
R version 2.10.1 (2009-12-14)
Copyright (C) 2009 The R Foundation for Statistical Computing
ISBN 3-900051-07-0

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> source("/xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/Correlate_Clinical_Clusters_onlysig.36.3689/Clusters2ClinicalAnalysis_nozzle_onlysig.R")
> result <- main("/xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/Correlate_Clinical_Clusters_onlysig.36.3689/", "-nF=/xchip/tcga/Tools/Nozzle/v1.current", "-iD=/xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/303687/LUAD-TP.mutsig.cluster.txt", "-iC=/xchip/cga/gdac-prod/tcga-gdac/jobResults/GDAC_clinicalDataPickerPipeline/LUAD-TP/2330215/1.GDAC_clinicalDataPicker.Finished/LUAD-TP.clin.merged.picked.txt", "-fF=ALL", "-fC=3", "-fH=5", "-fW=9", "-fP=OUT", "-cP=1", "-cQ=0.25", "-MF=ONLYSIG", "-oT=", "-nV=Nozzle.R1", "-OP=MUTSIG", "-iT=", "-iX=")
[1] "nver"          "-nV=Nozzle.R1"
[1] "nfn"                                 "/xchip/tcga/Tools/Nozzle/v1.current"
[1] "Nozzle.R1"
[1] "successfully load Nozzle.R1"
[1] "ofn"  "-oT="
[1] "opt"        "-OP=MUTSIG"
[1] "tl"   "-iT="
[1] "dx"   "-iX="
[1] "opt"    "MUTSIG"
[1] "dx" ""  

nPatients in clinical file=333, in cluster file=229, common to both=172
[1] "Reduce the number of clustering variables from 303 to 295."
[1] 295 172
[1] "KEAP1 MUTATION ANALYSIS"
[1] 3
  KEAP1 MUTATED KEAP1 WILD-TYPE 
             32             140 
  KEAP1 MUTATED KEAP1 WILD-TYPE 
             32             140 
[1] "KRAS MUTATION ANALYSIS"
[1] 3
  KRAS MUTATED KRAS WILD-TYPE 
            47            125 
  KRAS MUTATED KRAS WILD-TYPE 
            47            125 
[1] "TP53 MUTATION ANALYSIS"
[1] 3
  TP53 MUTATED TP53 WILD-TYPE 
            85             87 
  TP53 MUTATED TP53 WILD-TYPE 
            85             87 
[1] "STK11 MUTATION ANALYSIS"
[1] 3
  STK11 MUTATED STK11 WILD-TYPE 
             20             152 
  STK11 MUTATED STK11 WILD-TYPE 
             20             152 
[1] "NAV3 MUTATION ANALYSIS"
[1] 3
  NAV3 MUTATED NAV3 WILD-TYPE 
            35            137 
  NAV3 MUTATED NAV3 WILD-TYPE 
            35            137 
[1] "MAGEC1 MUTATION ANALYSIS"
[1] 3
  MAGEC1 MUTATED MAGEC1 WILD-TYPE 
              23              149 
  MAGEC1 MUTATED MAGEC1 WILD-TYPE 
              23              149 
[1] "CDH10 MUTATION ANALYSIS"
[1] 3
  CDH10 MUTATED CDH10 WILD-TYPE 
             33             139 
  CDH10 MUTATED CDH10 WILD-TYPE 
             33             139 
[1] "TMTC1 MUTATION ANALYSIS"
[1] 3
  TMTC1 MUTATED TMTC1 WILD-TYPE 
             22             150 
  TMTC1 MUTATED TMTC1 WILD-TYPE 
             22             150 
[1] "MUC7 MUTATION ANALYSIS"
[1] 3
  MUC7 MUTATED MUC7 WILD-TYPE 
            15            157 
  MUC7 MUTATED MUC7 WILD-TYPE 
            15            157 
[1] "ELTD1 MUTATION ANALYSIS"
[1] 3
  ELTD1 MUTATED ELTD1 WILD-TYPE 
             15             157 
  ELTD1 MUTATED ELTD1 WILD-TYPE 
             15             157 
[1] "OR2L3 MUTATION ANALYSIS"
[1] 3
  OR2L3 MUTATED OR2L3 WILD-TYPE 
             13             159 
  OR2L3 MUTATED OR2L3 WILD-TYPE 
             13             159 
[1] "RIMS2 MUTATION ANALYSIS"
[1] 3
  RIMS2 MUTATED RIMS2 WILD-TYPE 
             32             140 
  RIMS2 MUTATED RIMS2 WILD-TYPE 
             32             140 
[1] "REG3A MUTATION ANALYSIS"
[1] 3
  REG3A MUTATED REG3A WILD-TYPE 
             14             158 
  REG3A MUTATED REG3A WILD-TYPE 
             14             158 
[1] "CDKN2A MUTATION ANALYSIS"
[1] 3
  CDKN2A MUTATED CDKN2A WILD-TYPE 
               8              164 
  CDKN2A MUTATED CDKN2A WILD-TYPE 
               8              164 
[1] "EPHA6 MUTATION ANALYSIS"
[1] 3
  EPHA6 MUTATED EPHA6 WILD-TYPE 
             22             150 
  EPHA6 MUTATED EPHA6 WILD-TYPE 
             22             150 
[1] "CNBD1 MUTATION ANALYSIS"
[1] 3
  CNBD1 MUTATED CNBD1 WILD-TYPE 
             10             162 
  CNBD1 MUTATED CNBD1 WILD-TYPE 
             10             162 
[1] "OR2T4 MUTATION ANALYSIS"
[1] 3
  OR2T4 MUTATED OR2T4 WILD-TYPE 
             13             159 
  OR2T4 MUTATED OR2T4 WILD-TYPE 
             13             159 
[1] "CD5L MUTATION ANALYSIS"
[1] 3
  CD5L MUTATED CD5L WILD-TYPE 
            12            160 
  CD5L MUTATED CD5L WILD-TYPE 
            12            160 
[1] "GABRB3 MUTATION ANALYSIS"
[1] 3
  GABRB3 MUTATED GABRB3 WILD-TYPE 
              11              161 
  GABRB3 MUTATED GABRB3 WILD-TYPE 
              11              161 
[1] "OR4C16 MUTATION ANALYSIS"
[1] 3
  OR4C16 MUTATED OR4C16 WILD-TYPE 
              13              159 
  OR4C16 MUTATED OR4C16 WILD-TYPE 
              13              159 
[1] "ZNF676 MUTATION ANALYSIS"
[1] 3
  ZNF676 MUTATED ZNF676 WILD-TYPE 
              16              156 
  ZNF676 MUTATED ZNF676 WILD-TYPE 
              16              156 
[1] "BAGE2 MUTATION ANALYSIS"
[1] 3
  BAGE2 MUTATED BAGE2 WILD-TYPE 
              9             163 
  BAGE2 MUTATED BAGE2 WILD-TYPE 
              9             163 
[1] "OR4A5 MUTATION ANALYSIS"
[1] 3
  OR4A5 MUTATED OR4A5 WILD-TYPE 
             12             160 
  OR4A5 MUTATED OR4A5 WILD-TYPE 
             12             160 
[1] "TRIM58 MUTATION ANALYSIS"
[1] 3
  TRIM58 MUTATED TRIM58 WILD-TYPE 
               8              164 
  TRIM58 MUTATED TRIM58 WILD-TYPE 
               8              164 
[1] "REG1B MUTATION ANALYSIS"
[1] 3
  REG1B MUTATED REG1B WILD-TYPE 
             12             160 
  REG1B MUTATED REG1B WILD-TYPE 
             12             160 
[1] "LRRIQ3 MUTATION ANALYSIS"
[1] 3
  LRRIQ3 MUTATED LRRIQ3 WILD-TYPE 
              10              162 
  LRRIQ3 MUTATED LRRIQ3 WILD-TYPE 
              10              162 
[1] "ZNF804A MUTATION ANALYSIS"
[1] 3
  ZNF804A MUTATED ZNF804A WILD-TYPE 
               30               142 
  ZNF804A MUTATED ZNF804A WILD-TYPE 
               30               142 
[1] "C18ORF34 MUTATION ANALYSIS"
[1] 3
  C18ORF34 MUTATED C18ORF34 WILD-TYPE 
                19                153 
  C18ORF34 MUTATED C18ORF34 WILD-TYPE 
                19                153 
[1] "SERPINB4 MUTATION ANALYSIS"
[1] 3
  SERPINB4 MUTATED SERPINB4 WILD-TYPE 
                10                162 
  SERPINB4 MUTATED SERPINB4 WILD-TYPE 
                10                162 
[1] "OR2L8 MUTATION ANALYSIS"
[1] 3
  OR2L8 MUTATED OR2L8 WILD-TYPE 
             12             160 
  OR2L8 MUTATED OR2L8 WILD-TYPE 
             12             160 
[1] "TBX22 MUTATION ANALYSIS"
[1] 3
  TBX22 MUTATED TBX22 WILD-TYPE 
             12             160 
  TBX22 MUTATED TBX22 WILD-TYPE 
             12             160 
[1] "BRAF MUTATION ANALYSIS"
[1] 3
  BRAF MUTATED BRAF WILD-TYPE 
            15            157 
  BRAF MUTATED BRAF WILD-TYPE 
            15            157 
[1] "OR5W2 MUTATION ANALYSIS"
[1] 3
  OR5W2 MUTATED OR5W2 WILD-TYPE 
              9             163 
  OR5W2 MUTATED OR5W2 WILD-TYPE 
              9             163 
[1] "OR8H2 MUTATION ANALYSIS"
[1] 3
  OR8H2 MUTATED OR8H2 WILD-TYPE 
             11             161 
  OR8H2 MUTATED OR8H2 WILD-TYPE 
             11             161 
[1] "OR5D14 MUTATION ANALYSIS"
[1] 3
  OR5D14 MUTATED OR5D14 WILD-TYPE 
              13              159 
  OR5D14 MUTATED OR5D14 WILD-TYPE 
              13              159 
[1] "OR5I1 MUTATION ANALYSIS"
[1] 3
  OR5I1 MUTATED OR5I1 WILD-TYPE 
             11             161 
  OR5I1 MUTATED OR5I1 WILD-TYPE 
             11             161 
[1] "OR4C15 MUTATION ANALYSIS"
[1] 3
  OR4C15 MUTATED OR4C15 WILD-TYPE 
              13              159 
  OR4C15 MUTATED OR4C15 WILD-TYPE 
              13              159 
[1] "LRRTM4 MUTATION ANALYSIS"
[1] 3
  LRRTM4 MUTATED LRRTM4 WILD-TYPE 
              18              154 
  LRRTM4 MUTATED LRRTM4 WILD-TYPE 
              18              154 
[1] "KCNT2 MUTATION ANALYSIS"
[1] 3
  KCNT2 MUTATED KCNT2 WILD-TYPE 
             17             155 
  KCNT2 MUTATED KCNT2 WILD-TYPE 
             17             155 
[1] "HEATR7B2 MUTATION ANALYSIS"
[1] 3
  HEATR7B2 MUTATED HEATR7B2 WILD-TYPE 
                20                152 
  HEATR7B2 MUTATED HEATR7B2 WILD-TYPE 
                20                152 
[1] "SPANXN2 MUTATION ANALYSIS"
[1] 3
  SPANXN2 MUTATED SPANXN2 WILD-TYPE 
                7               165 
  SPANXN2 MUTATED SPANXN2 WILD-TYPE 
                7               165 
[1] "RIT1 MUTATION ANALYSIS"
[1] 3
  RIT1 MUTATED RIT1 WILD-TYPE 
             8            164 
  RIT1 MUTATED RIT1 WILD-TYPE 
             8            164 
[1] "FERD3L MUTATION ANALYSIS"
[1] 3
  FERD3L MUTATED FERD3L WILD-TYPE 
               7              165 
  FERD3L MUTATED FERD3L WILD-TYPE 
               7              165 
[1] "ZIC4 MUTATION ANALYSIS"
[1] 3
  ZIC4 MUTATED ZIC4 WILD-TYPE 
            13            159 
  ZIC4 MUTATED ZIC4 WILD-TYPE 
            13            159 
[1] "ZNF492 MUTATION ANALYSIS"
[1] 3
  ZNF492 MUTATED ZNF492 WILD-TYPE 
               8              164 
  ZNF492 MUTATED ZNF492 WILD-TYPE 
               8              164 
[1] "CPXCR1 MUTATION ANALYSIS"
[1] 3
  CPXCR1 MUTATED CPXCR1 WILD-TYPE 
              10              162 
  CPXCR1 MUTATED CPXCR1 WILD-TYPE 
              10              162 
[1] "OR2T34 MUTATION ANALYSIS"
[1] 3
  OR2T34 MUTATED OR2T34 WILD-TYPE 
              10              162 
  OR2T34 MUTATED OR2T34 WILD-TYPE 
              10              162 
[1] "THEMIS MUTATION ANALYSIS"
[1] 3
  THEMIS MUTATED THEMIS WILD-TYPE 
              10              162 
  THEMIS MUTATED THEMIS WILD-TYPE 
              10              162 
[1] "FAM71B MUTATION ANALYSIS"
[1] 3
  FAM71B MUTATED FAM71B WILD-TYPE 
              14              158 
  FAM71B MUTATED FAM71B WILD-TYPE 
              14              158 
[1] "RPL10L MUTATION ANALYSIS"
[1] 3
  RPL10L MUTATED RPL10L WILD-TYPE 
               6              166 
  RPL10L MUTATED RPL10L WILD-TYPE 
               6              166 
[1] "EPHB1 MUTATION ANALYSIS"
[1] 3
  EPHB1 MUTATED EPHB1 WILD-TYPE 
             18             154 
  EPHB1 MUTATED EPHB1 WILD-TYPE 
             18             154 
[1] "HGF MUTATION ANALYSIS"
[1] 3
  HGF MUTATED HGF WILD-TYPE 
           16           156 
  HGF MUTATED HGF WILD-TYPE 
           16           156 
[1] "OR4S2 MUTATION ANALYSIS"
[1] 3
  OR4S2 MUTATED OR4S2 WILD-TYPE 
              6             166 
  OR4S2 MUTATED OR4S2 WILD-TYPE 
              6             166 
[1] "ZNF268 MUTATION ANALYSIS"
[1] 3
  ZNF268 MUTATED ZNF268 WILD-TYPE 
               5              167 
  ZNF268 MUTATED ZNF268 WILD-TYPE 
               5              167 
[1] "TBX15 MUTATION ANALYSIS"
[1] 3
  TBX15 MUTATED TBX15 WILD-TYPE 
             11             161 
  TBX15 MUTATED TBX15 WILD-TYPE 
             11             161 
[1] "MAGEB18 MUTATION ANALYSIS"
[1] 3
  MAGEB18 MUTATED MAGEB18 WILD-TYPE 
                5               167 
  MAGEB18 MUTATED MAGEB18 WILD-TYPE 
                5               167 
[1] "CXORF59 MUTATION ANALYSIS"
[1] 3
  CXORF59 MUTATED CXORF59 WILD-TYPE 
                8               164 
  CXORF59 MUTATED CXORF59 WILD-TYPE 
                8               164 
[1] "NRG3 MUTATION ANALYSIS"
[1] 3
  NRG3 MUTATED NRG3 WILD-TYPE 
            13            159 
  NRG3 MUTATED NRG3 WILD-TYPE 
            13            159 
[1] "SYT4 MUTATION ANALYSIS"
[1] 3
  SYT4 MUTATED SYT4 WILD-TYPE 
            11            161 
  SYT4 MUTATED SYT4 WILD-TYPE 
            11            161 
[1] "OR52E4 MUTATION ANALYSIS"
[1] 3
  OR52E4 MUTATED OR52E4 WILD-TYPE 
               6              166 
  OR52E4 MUTATED OR52E4 WILD-TYPE 
               6              166 
[1] "OR14I1 MUTATION ANALYSIS"
[1] 3
  OR14I1 MUTATED OR14I1 WILD-TYPE 
               6              166 
  OR14I1 MUTATED OR14I1 WILD-TYPE 
               6              166 
[1] "WDR49 MUTATION ANALYSIS"
[1] 3
  WDR49 MUTATED WDR49 WILD-TYPE 
              9             163 
  WDR49 MUTATED WDR49 WILD-TYPE 
              9             163 
[1] "KRTAP15-1 MUTATION ANALYSIS"
[1] 3
  KRTAP15-1 MUTATED KRTAP15-1 WILD-TYPE 
                  5                 167 
  KRTAP15-1 MUTATED KRTAP15-1 WILD-TYPE 
                  5                 167 
[1] "SATB2 MUTATION ANALYSIS"
[1] 3
  SATB2 MUTATED SATB2 WILD-TYPE 
             15             157 
  SATB2 MUTATED SATB2 WILD-TYPE 
             15             157 
[1] "MARCH11 MUTATION ANALYSIS"
[1] 3
  MARCH11 MUTATED MARCH11 WILD-TYPE 
                8               164 
  MARCH11 MUTATED MARCH11 WILD-TYPE 
                8               164 
[1] "KRTAP19-6 MUTATION ANALYSIS"
[1] 3
  KRTAP19-6 MUTATED KRTAP19-6 WILD-TYPE 
                  4                 168 
  KRTAP19-6 MUTATED KRTAP19-6 WILD-TYPE 
                  4                 168 
[1] "OR5F1 MUTATION ANALYSIS"
[1] 3
  OR5F1 MUTATED OR5F1 WILD-TYPE 
             12             160 
  OR5F1 MUTATED OR5F1 WILD-TYPE 
             12             160 
[1] "ARHGAP36 MUTATION ANALYSIS"
[1] 3
  ARHGAP36 MUTATED ARHGAP36 WILD-TYPE 
                13                159 
  ARHGAP36 MUTATED ARHGAP36 WILD-TYPE 
                13                159 
[1] "MYL10 MUTATION ANALYSIS"
[1] 3
  MYL10 MUTATED MYL10 WILD-TYPE 
              5             167 
  MYL10 MUTATED MYL10 WILD-TYPE 
              5             167 
[1] "ZSWIM2 MUTATION ANALYSIS"
[1] 3
  ZSWIM2 MUTATED ZSWIM2 WILD-TYPE 
              13              159 
  ZSWIM2 MUTATED ZSWIM2 WILD-TYPE 
              13              159 
[1] "OR2M7 MUTATION ANALYSIS"
[1] 3
  OR2M7 MUTATED OR2M7 WILD-TYPE 
              9             163 
  OR2M7 MUTATED OR2M7 WILD-TYPE 
              9             163 
[1] "C7 MUTATION ANALYSIS"
[1] 3
  C7 MUTATED C7 WILD-TYPE 
          14          158 
  C7 MUTATED C7 WILD-TYPE 
          14          158 
[1] "OR8H3 MUTATION ANALYSIS"
[1] 3
  OR8H3 MUTATED OR8H3 WILD-TYPE 
             11             161 
  OR8H3 MUTATED OR8H3 WILD-TYPE 
             11             161 
[1] "IL1RAPL1 MUTATION ANALYSIS"
[1] 3
  IL1RAPL1 MUTATED IL1RAPL1 WILD-TYPE 
                11                161 
  IL1RAPL1 MUTATED IL1RAPL1 WILD-TYPE 
                11                161 
[1] "SLC35F1 MUTATION ANALYSIS"
[1] 3
  SLC35F1 MUTATED SLC35F1 WILD-TYPE 
                9               163 
  SLC35F1 MUTATED SLC35F1 WILD-TYPE 
                9               163 
[1] "FABP12 MUTATION ANALYSIS"
[1] 3
  FABP12 MUTATED FABP12 WILD-TYPE 
               3              169 
  FABP12 MUTATED FABP12 WILD-TYPE 
               3              169 
[1] "FLI1 MUTATION ANALYSIS"
[1] 3
  FLI1 MUTATED FLI1 WILD-TYPE 
             6            166 
  FLI1 MUTATED FLI1 WILD-TYPE 
             6            166 
[1] "OR5D16 MUTATION ANALYSIS"
[1] 3
  OR5D16 MUTATED OR5D16 WILD-TYPE 
               7              165 
  OR5D16 MUTATED OR5D16 WILD-TYPE 
               7              165 
[1] "CMKLR1 MUTATION ANALYSIS"
[1] 3
  CMKLR1 MUTATED CMKLR1 WILD-TYPE 
               7              165 
  CMKLR1 MUTATED CMKLR1 WILD-TYPE 
               7              165 
[1] "OR2W5 MUTATION ANALYSIS"
[1] 3
  OR2W5 MUTATED OR2W5 WILD-TYPE 
              7             165 
  OR2W5 MUTATED OR2W5 WILD-TYPE 
              7             165 
[1] "ADAMTS2 MUTATION ANALYSIS"
[1] 3
  ADAMTS2 MUTATED ADAMTS2 WILD-TYPE 
               14               158 
  ADAMTS2 MUTATED ADAMTS2 WILD-TYPE 
               14               158 
[1] "OR14A16 MUTATION ANALYSIS"
[1] 3
  OR14A16 MUTATED OR14A16 WILD-TYPE 
               12               160 
  OR14A16 MUTATED OR14A16 WILD-TYPE 
               12               160 
[1] "OR6N2 MUTATION ANALYSIS"
[1] 3
  OR6N2 MUTATED OR6N2 WILD-TYPE 
              7             165 
  OR6N2 MUTATED OR6N2 WILD-TYPE 
              7             165 
[1] "OR13G1 MUTATION ANALYSIS"
[1] 3
  OR13G1 MUTATED OR13G1 WILD-TYPE 
               9              163 
  OR13G1 MUTATED OR13G1 WILD-TYPE 
               9              163 
[1] "ADAMTS16 MUTATION ANALYSIS"
[1] 3
  ADAMTS16 MUTATED ADAMTS16 WILD-TYPE 
                22                150 
  ADAMTS16 MUTATED ADAMTS16 WILD-TYPE 
                22                150 
[1] "OR5T2 MUTATION ANALYSIS"
[1] 3
  OR5T2 MUTATED OR5T2 WILD-TYPE 
              8             164 
  OR5T2 MUTATED OR5T2 WILD-TYPE 
              8             164 
[1] "SEMA3A MUTATION ANALYSIS"
[1] 3
  SEMA3A MUTATED SEMA3A WILD-TYPE 
              10              162 
  SEMA3A MUTATED SEMA3A WILD-TYPE 
              10              162 
[1] "OR2T27 MUTATION ANALYSIS"
[1] 3
  OR2T27 MUTATED OR2T27 WILD-TYPE 
               8              164 
  OR2T27 MUTATED OR2T27 WILD-TYPE 
               8              164 
[1] "VN1R2 MUTATION ANALYSIS"
[1] 3
  VN1R2 MUTATED VN1R2 WILD-TYPE 
              7             165 
  VN1R2 MUTATED VN1R2 WILD-TYPE 
              7             165 
[1] "OR2T3 MUTATION ANALYSIS"
[1] 3
  OR2T3 MUTATED OR2T3 WILD-TYPE 
              9             163 
  OR2T3 MUTATED OR2T3 WILD-TYPE 
              9             163 
[1] "C14ORF177 MUTATION ANALYSIS"
[1] 3
  C14ORF177 MUTATED C14ORF177 WILD-TYPE 
                  5                 167 
  C14ORF177 MUTATED C14ORF177 WILD-TYPE 
                  5                 167 
[1] "PSG6 MUTATION ANALYSIS"
[1] 3
  PSG6 MUTATED PSG6 WILD-TYPE 
            11            161 
  PSG6 MUTATED PSG6 WILD-TYPE 
            11            161 
[1] "EPHA7 MUTATION ANALYSIS"
[1] 3
  EPHA7 MUTATED EPHA7 WILD-TYPE 
             11             161 
  EPHA7 MUTATED EPHA7 WILD-TYPE 
             11             161 
[1] "KRTAP11-1 MUTATION ANALYSIS"
[1] 3
  KRTAP11-1 MUTATED KRTAP11-1 WILD-TYPE 
                  6                 166 
  KRTAP11-1 MUTATED KRTAP11-1 WILD-TYPE 
                  6                 166 
[1] "RBM10 MUTATION ANALYSIS"
[1] 3
  RBM10 MUTATED RBM10 WILD-TYPE 
             12             160 
  RBM10 MUTATED RBM10 WILD-TYPE 
             12             160 
[1] "TMEM195 MUTATION ANALYSIS"
[1] 3
  TMEM195 MUTATED TMEM195 WILD-TYPE 
               11               161 
  TMEM195 MUTATED TMEM195 WILD-TYPE 
               11               161 
[1] "C7ORF58 MUTATION ANALYSIS"
[1] 3
  C7ORF58 MUTATED C7ORF58 WILD-TYPE 
               17               155 
  C7ORF58 MUTATED C7ORF58 WILD-TYPE 
               17               155 
[1] "MAGEC2 MUTATION ANALYSIS"
[1] 3
  MAGEC2 MUTATED MAGEC2 WILD-TYPE 
               8              164 
  MAGEC2 MUTATED MAGEC2 WILD-TYPE 
               8              164 
[1] "PYHIN1 MUTATION ANALYSIS"
[1] 3
  PYHIN1 MUTATED PYHIN1 WILD-TYPE 
               7              165 
  PYHIN1 MUTATED PYHIN1 WILD-TYPE 
               7              165 
[1] "PABPC3 MUTATION ANALYSIS"
[1] 3
  PABPC3 MUTATED PABPC3 WILD-TYPE 
               9              163 
  PABPC3 MUTATED PABPC3 WILD-TYPE 
               9              163 
[1] "LRRIQ1 MUTATION ANALYSIS"
[1] 3
  LRRIQ1 MUTATED LRRIQ1 WILD-TYPE 
              21              151 
  LRRIQ1 MUTATED LRRIQ1 WILD-TYPE 
              21              151 
[1] "IRX1 MUTATION ANALYSIS"
[1] 3
  IRX1 MUTATED IRX1 WILD-TYPE 
             7            165 
  IRX1 MUTATED IRX1 WILD-TYPE 
             7            165 
[1] "SAMD7 MUTATION ANALYSIS"
[1] 3
  SAMD7 MUTATED SAMD7 WILD-TYPE 
              6             166 
  SAMD7 MUTATED SAMD7 WILD-TYPE 
              6             166 
[1] "BIRC8 MUTATION ANALYSIS"
[1] 3
  BIRC8 MUTATED BIRC8 WILD-TYPE 
              6             166 
  BIRC8 MUTATED BIRC8 WILD-TYPE 
              6             166 
[1] "TBX5 MUTATION ANALYSIS"
[1] 3
  TBX5 MUTATED TBX5 WILD-TYPE 
            11            161 
  TBX5 MUTATED TBX5 WILD-TYPE 
            11            161 
[1] "TYR MUTATION ANALYSIS"
[1] 3
  TYR MUTATED TYR WILD-TYPE 
           10           162 
  TYR MUTATED TYR WILD-TYPE 
           10           162 
[1] "NTNG1 MUTATION ANALYSIS"
[1] 3
  NTNG1 MUTATED NTNG1 WILD-TYPE 
             11             161 
  NTNG1 MUTATED NTNG1 WILD-TYPE 
             11             161 
[1] "OR10G8 MUTATION ANALYSIS"
[1] 3
  OR10G8 MUTATED OR10G8 WILD-TYPE 
               8              164 
  OR10G8 MUTATED OR10G8 WILD-TYPE 
               8              164 
[1] "ADAMTS18 MUTATION ANALYSIS"
[1] 3
  ADAMTS18 MUTATED ADAMTS18 WILD-TYPE 
                17                155 
  ADAMTS18 MUTATED ADAMTS18 WILD-TYPE 
                17                155 
[1] "OR4L1 MUTATION ANALYSIS"
[1] 3
  OR4L1 MUTATED OR4L1 WILD-TYPE 
              7             165 
  OR4L1 MUTATED OR4L1 WILD-TYPE 
              7             165 
[1] "BCHE MUTATION ANALYSIS"
[1] 3
  BCHE MUTATED BCHE WILD-TYPE 
             9            163 
  BCHE MUTATED BCHE WILD-TYPE 
             9            163 
[1] "GPR101 MUTATION ANALYSIS"
[1] 3
  GPR101 MUTATED GPR101 WILD-TYPE 
               9              163 
  GPR101 MUTATED GPR101 WILD-TYPE 
               9              163 
[1] "OR10K2 MUTATION ANALYSIS"
[1] 3
  OR10K2 MUTATED OR10K2 WILD-TYPE 
               9              163 
  OR10K2 MUTATED OR10K2 WILD-TYPE 
               9              163 
[1] "NPFFR2 MUTATION ANALYSIS"
[1] 3
  NPFFR2 MUTATED NPFFR2 WILD-TYPE 
              10              162 
  NPFFR2 MUTATED NPFFR2 WILD-TYPE 
              10              162 
[1] "OR2M4 MUTATION ANALYSIS"
[1] 3
  OR2M4 MUTATED OR2M4 WILD-TYPE 
             11             161 
  OR2M4 MUTATED OR2M4 WILD-TYPE 
             11             161 
[1] "NRXN1 MUTATION ANALYSIS"
[1] 3
  NRXN1 MUTATED NRXN1 WILD-TYPE 
             25             147 
  NRXN1 MUTATED NRXN1 WILD-TYPE 
             25             147 
[1] "SLC10A2 MUTATION ANALYSIS"
[1] 3
  SLC10A2 MUTATED SLC10A2 WILD-TYPE 
                7               165 
  SLC10A2 MUTATED SLC10A2 WILD-TYPE 
                7               165 
[1] "SERPINB13 MUTATION ANALYSIS"
[1] 3
  SERPINB13 MUTATED SERPINB13 WILD-TYPE 
                  9                 163 
  SERPINB13 MUTATED SERPINB13 WILD-TYPE 
                  9                 163 
[1] "SLITRK4 MUTATION ANALYSIS"
[1] 3
  SLITRK4 MUTATED SLITRK4 WILD-TYPE 
               15               157 
  SLITRK4 MUTATED SLITRK4 WILD-TYPE 
               15               157 
[1] "CRIPAK MUTATION ANALYSIS"
[1] 3
  CRIPAK MUTATED CRIPAK WILD-TYPE 
              10              162 
  CRIPAK MUTATED CRIPAK WILD-TYPE 
              10              162 
[1] "OR10T2 MUTATION ANALYSIS"
[1] 3
  OR10T2 MUTATED OR10T2 WILD-TYPE 
               7              165 
  OR10T2 MUTATED OR10T2 WILD-TYPE 
               7              165 
[1] "RB1 MUTATION ANALYSIS"
[1] 3
  RB1 MUTATED RB1 WILD-TYPE 
            7           165 
  RB1 MUTATED RB1 WILD-TYPE 
            7           165 
[1] "OR5B3 MUTATION ANALYSIS"
[1] 3
  OR5B3 MUTATED OR5B3 WILD-TYPE 
              7             165 
  OR5B3 MUTATED OR5B3 WILD-TYPE 
              7             165 
[1] "SLITRK2 MUTATION ANALYSIS"
[1] 3
  SLITRK2 MUTATED SLITRK2 WILD-TYPE 
               19               153 
  SLITRK2 MUTATED SLITRK2 WILD-TYPE 
               19               153 
[1] "FAM48B1 MUTATION ANALYSIS"
[1] 3
  FAM48B1 MUTATED FAM48B1 WILD-TYPE 
               10               162 
  FAM48B1 MUTATED FAM48B1 WILD-TYPE 
               10               162 
[1] "GPR174 MUTATION ANALYSIS"
[1] 3
  GPR174 MUTATED GPR174 WILD-TYPE 
               6              166 
  GPR174 MUTATED GPR174 WILD-TYPE 
               6              166 
[1] "OR10A2 MUTATION ANALYSIS"
[1] 3
  OR10A2 MUTATED OR10A2 WILD-TYPE 
               7              165 
  OR10A2 MUTATED OR10A2 WILD-TYPE 
               7              165 
[1] "OR5D13 MUTATION ANALYSIS"
[1] 3
  OR5D13 MUTATED OR5D13 WILD-TYPE 
               4              168 
  OR5D13 MUTATED OR5D13 WILD-TYPE 
               4              168 
[1] "HOXB3 MUTATION ANALYSIS"
[1] 3
  HOXB3 MUTATED HOXB3 WILD-TYPE 
             10             162 
  HOXB3 MUTATED HOXB3 WILD-TYPE 
             10             162 
[1] "CTNNA2 MUTATION ANALYSIS"
[1] 3
  CTNNA2 MUTATED CTNNA2 WILD-TYPE 
              20              152 
  CTNNA2 MUTATED CTNNA2 WILD-TYPE 
              20              152 
[1] "GBA3 MUTATION ANALYSIS"
[1] 3
  GBA3 MUTATED GBA3 WILD-TYPE 
             8            164 
  GBA3 MUTATED GBA3 WILD-TYPE 
             8            164 
[1] "TUBB4Q MUTATION ANALYSIS"
[1] 3
  TUBB4Q MUTATED TUBB4Q WILD-TYPE 
               9              163 
  TUBB4Q MUTATED TUBB4Q WILD-TYPE 
               9              163 
[1] "INHBA MUTATION ANALYSIS"
[1] 3
  INHBA MUTATED INHBA WILD-TYPE 
              9             163 
  INHBA MUTATED INHBA WILD-TYPE 
              9             163 
[1] "DIO2 MUTATION ANALYSIS"
[1] 3
  DIO2 MUTATED DIO2 WILD-TYPE 
             6            166 
  DIO2 MUTATED DIO2 WILD-TYPE 
             6            166 
[1] "NELL1 MUTATION ANALYSIS"
[1] 3
  NELL1 MUTATED NELL1 WILD-TYPE 
             14             158 
  NELL1 MUTATED NELL1 WILD-TYPE 
             14             158 
[1] "OR2L2 MUTATION ANALYSIS"
[1] 3
  OR2L2 MUTATED OR2L2 WILD-TYPE 
              9             163 
  OR2L2 MUTATED OR2L2 WILD-TYPE 
              9             163 
[1] "GALNT13 MUTATION ANALYSIS"
[1] 3
  GALNT13 MUTATED GALNT13 WILD-TYPE 
                7               165 
  GALNT13 MUTATED GALNT13 WILD-TYPE 
                7               165 
[1] "PIP MUTATION ANALYSIS"
[1] 3
  PIP MUTATED PIP WILD-TYPE 
            5           167 
  PIP MUTATED PIP WILD-TYPE 
            5           167 
[1] "SULT1B1 MUTATION ANALYSIS"
[1] 3
  SULT1B1 MUTATED SULT1B1 WILD-TYPE 
                7               165 
  SULT1B1 MUTATED SULT1B1 WILD-TYPE 
                7               165 
[1] "GNG2 MUTATION ANALYSIS"
[1] 3
  GNG2 MUTATED GNG2 WILD-TYPE 
             4            168 
  GNG2 MUTATED GNG2 WILD-TYPE 
             4            168 
[1] "ARPP21 MUTATION ANALYSIS"
[1] 3
  ARPP21 MUTATED ARPP21 WILD-TYPE 
              15              157 
  ARPP21 MUTATED ARPP21 WILD-TYPE 
              15              157 
[1] "DEFB112 MUTATION ANALYSIS"
[1] 3
  DEFB112 MUTATED DEFB112 WILD-TYPE 
                4               168 
  DEFB112 MUTATED DEFB112 WILD-TYPE 
                4               168 
[1] "NLGN1 MUTATION ANALYSIS"
[1] 3
  NLGN1 MUTATED NLGN1 WILD-TYPE 
             15             157 
  NLGN1 MUTATED NLGN1 WILD-TYPE 
             15             157 
[1] "TAS2R1 MUTATION ANALYSIS"
[1] 3
  TAS2R1 MUTATED TAS2R1 WILD-TYPE 
               6              166 
  TAS2R1 MUTATED TAS2R1 WILD-TYPE 
               6              166 
[1] "UGT2B10 MUTATION ANALYSIS"
[1] 3
  UGT2B10 MUTATED UGT2B10 WILD-TYPE 
               11               161 
  UGT2B10 MUTATED UGT2B10 WILD-TYPE 
               11               161 
[1] "PRIM2 MUTATION ANALYSIS"
[1] 3
  PRIM2 MUTATED PRIM2 WILD-TYPE 
             10             162 
  PRIM2 MUTATED PRIM2 WILD-TYPE 
             10             162 
[1] "TBX3 MUTATION ANALYSIS"
[1] 3
  TBX3 MUTATED TBX3 WILD-TYPE 
             7            165 
  TBX3 MUTATED TBX3 WILD-TYPE 
             7            165 
[1] "CYP4V2 MUTATION ANALYSIS"
[1] 3
  CYP4V2 MUTATED CYP4V2 WILD-TYPE 
               6              166 
  CYP4V2 MUTATED CYP4V2 WILD-TYPE 
               6              166 
[1] "PI15 MUTATION ANALYSIS"
[1] 3
  PI15 MUTATED PI15 WILD-TYPE 
             7            165 
  PI15 MUTATED PI15 WILD-TYPE 
             7            165 
[1] "DYTN MUTATION ANALYSIS"
[1] 3
  DYTN MUTATED DYTN WILD-TYPE 
            10            162 
  DYTN MUTATED DYTN WILD-TYPE 
            10            162 
[1] "OR6K6 MUTATION ANALYSIS"
[1] 3
  OR6K6 MUTATED OR6K6 WILD-TYPE 
              8             164 
  OR6K6 MUTATED OR6K6 WILD-TYPE 
              8             164 
[1] "FCRL1 MUTATION ANALYSIS"
[1] 3
  FCRL1 MUTATED FCRL1 WILD-TYPE 
              6             166 
  FCRL1 MUTATED FCRL1 WILD-TYPE 
              6             166 
[1] "TUBA3C MUTATION ANALYSIS"
[1] 3
  TUBA3C MUTATED TUBA3C WILD-TYPE 
               7              165 
  TUBA3C MUTATED TUBA3C WILD-TYPE 
               7              165 
[1] "DACH1 MUTATION ANALYSIS"
[1] 3
  DACH1 MUTATED DACH1 WILD-TYPE 
             11             161 
  DACH1 MUTATED DACH1 WILD-TYPE 
             11             161 
[1] "NHEDC1 MUTATION ANALYSIS"
[1] 3
  NHEDC1 MUTATED NHEDC1 WILD-TYPE 
               9              163 
  NHEDC1 MUTATED NHEDC1 WILD-TYPE 
               9              163 
[1] "FAM47B MUTATION ANALYSIS"
[1] 3
  FAM47B MUTATED FAM47B WILD-TYPE 
              14              158 
  FAM47B MUTATED FAM47B WILD-TYPE 
              14              158 
[1] "OR8K3 MUTATION ANALYSIS"
[1] 3
  OR8K3 MUTATED OR8K3 WILD-TYPE 
              5             167 
  OR8K3 MUTATED OR8K3 WILD-TYPE 
              5             167 
[1] "FSTL5 MUTATION ANALYSIS"
[1] 3
  FSTL5 MUTATED FSTL5 WILD-TYPE 
             16             156 
  FSTL5 MUTATED FSTL5 WILD-TYPE 
             16             156 
[1] "NLRP14 MUTATION ANALYSIS"
[1] 3
  NLRP14 MUTATED NLRP14 WILD-TYPE 
              18              154 
  NLRP14 MUTATED NLRP14 WILD-TYPE 
              18              154 
[1] "OR51A7 MUTATION ANALYSIS"
[1] 3
  OR51A7 MUTATED OR51A7 WILD-TYPE 
               7              165 
  OR51A7 MUTATED OR51A7 WILD-TYPE 
               7              165 
[1] "CRISP1 MUTATION ANALYSIS"
[1] 3
  CRISP1 MUTATED CRISP1 WILD-TYPE 
               4              168 
  CRISP1 MUTATED CRISP1 WILD-TYPE 
               4              168 
[1] "MARCO MUTATION ANALYSIS"
[1] 3
  MARCO MUTATED MARCO WILD-TYPE 
             13             159 
  MARCO MUTATED MARCO WILD-TYPE 
             13             159 
[1] "POT1 MUTATION ANALYSIS"
[1] 3
  POT1 MUTATED POT1 WILD-TYPE 
             8            164 
  POT1 MUTATED POT1 WILD-TYPE 
             8            164 
[1] "ANKRD7 MUTATION ANALYSIS"
[1] 3
  ANKRD7 MUTATED ANKRD7 WILD-TYPE 
               6              166 
  ANKRD7 MUTATED ANKRD7 WILD-TYPE 
               6              166 
[1] "CDH12 MUTATION ANALYSIS"
[1] 3
  CDH12 MUTATED CDH12 WILD-TYPE 
             17             155 
  CDH12 MUTATED CDH12 WILD-TYPE 
             17             155 
[1] "GPR65 MUTATION ANALYSIS"
[1] 3
  GPR65 MUTATED GPR65 WILD-TYPE 
              3             169 
  GPR65 MUTATED GPR65 WILD-TYPE 
              3             169 
[1] "RIMS4 MUTATION ANALYSIS"
[1] 3
  RIMS4 MUTATED RIMS4 WILD-TYPE 
              7             165 
  RIMS4 MUTATED RIMS4 WILD-TYPE 
              7             165 
[1] "TCTEX1D1 MUTATION ANALYSIS"
[1] 3
  TCTEX1D1 MUTATED TCTEX1D1 WILD-TYPE 
                 5                167 
  TCTEX1D1 MUTATED TCTEX1D1 WILD-TYPE 
                 5                167 
[1] "DCLK3 MUTATION ANALYSIS"
[1] 3
  DCLK3 MUTATED DCLK3 WILD-TYPE 
             10             162 
  DCLK3 MUTATED DCLK3 WILD-TYPE 
             10             162 
[1] "FGF14 MUTATION ANALYSIS"
[1] 3
  FGF14 MUTATED FGF14 WILD-TYPE 
              7             165 
  FGF14 MUTATED FGF14 WILD-TYPE 
              7             165 
[1] "P2RY10 MUTATION ANALYSIS"
[1] 3
  P2RY10 MUTATED P2RY10 WILD-TYPE 
               7              165 
  P2RY10 MUTATED P2RY10 WILD-TYPE 
               7              165 
[1] "RIT2 MUTATION ANALYSIS"
[1] 3
  RIT2 MUTATED RIT2 WILD-TYPE 
             3            169 
  RIT2 MUTATED RIT2 WILD-TYPE 
             3            169 
[1] "FCGR3A MUTATION ANALYSIS"
[1] 3
  FCGR3A MUTATED FCGR3A WILD-TYPE 
               6              166 
  FCGR3A MUTATED FCGR3A WILD-TYPE 
               6              166 
[1] "ENPP3 MUTATION ANALYSIS"
[1] 3
  ENPP3 MUTATED ENPP3 WILD-TYPE 
             10             162 
  ENPP3 MUTATED ENPP3 WILD-TYPE 
             10             162 
[1] "STXBP5L MUTATION ANALYSIS"
[1] 3
  STXBP5L MUTATED STXBP5L WILD-TYPE 
               12               160 
  STXBP5L MUTATED STXBP5L WILD-TYPE 
               12               160 
[1] "CCDC73 MUTATION ANALYSIS"
[1] 3
  CCDC73 MUTATED CCDC73 WILD-TYPE 
              11              161 
  CCDC73 MUTATED CCDC73 WILD-TYPE 
              11              161 
[1] "OR4M1 MUTATION ANALYSIS"
[1] 3
  OR4M1 MUTATED OR4M1 WILD-TYPE 
              8             164 
  OR4M1 MUTATED OR4M1 WILD-TYPE 
              8             164 
[1] "ZBBX MUTATION ANALYSIS"
[1] 3
  ZBBX MUTATED ZBBX WILD-TYPE 
            10            162 
  ZBBX MUTATED ZBBX WILD-TYPE 
            10            162 
[1] "OR4C12 MUTATION ANALYSIS"
[1] 3
  OR4C12 MUTATED OR4C12 WILD-TYPE 
               5              167 
  OR4C12 MUTATED OR4C12 WILD-TYPE 
               5              167 
[1] "CNGA2 MUTATION ANALYSIS"
[1] 3
  CNGA2 MUTATED CNGA2 WILD-TYPE 
             11             161 
  CNGA2 MUTATED CNGA2 WILD-TYPE 
             11             161 
[1] "CDH18 MUTATION ANALYSIS"
[1] 3
  CDH18 MUTATED CDH18 WILD-TYPE 
             21             151 
  CDH18 MUTATED CDH18 WILD-TYPE 
             21             151 
[1] "ST6GALNAC3 MUTATION ANALYSIS"
[1] 3
  ST6GALNAC3 MUTATED ST6GALNAC3 WILD-TYPE 
                   8                  164 
  ST6GALNAC3 MUTATED ST6GALNAC3 WILD-TYPE 
                   8                  164 
[1] "TKTL2 MUTATION ANALYSIS"
[1] 3
  TKTL2 MUTATED TKTL2 WILD-TYPE 
             10             162 
  TKTL2 MUTATED TKTL2 WILD-TYPE 
             10             162 
[1] "AKR1B10 MUTATION ANALYSIS"
[1] 3
  AKR1B10 MUTATED AKR1B10 WILD-TYPE 
                4               168 
  AKR1B10 MUTATED AKR1B10 WILD-TYPE 
                4               168 
[1] "TCEAL5 MUTATION ANALYSIS"
[1] 3
  TCEAL5 MUTATED TCEAL5 WILD-TYPE 
               5              167 
  TCEAL5 MUTATED TCEAL5 WILD-TYPE 
               5              167 
[1] "KCNS2 MUTATION ANALYSIS"
[1] 3
  KCNS2 MUTATED KCNS2 WILD-TYPE 
              7             165 
  KCNS2 MUTATED KCNS2 WILD-TYPE 
              7             165 
[1] "KRTAP8-1 MUTATION ANALYSIS"
[1] 3
  KRTAP8-1 MUTATED KRTAP8-1 WILD-TYPE 
                 3                169 
  KRTAP8-1 MUTATED KRTAP8-1 WILD-TYPE 
                 3                169 
[1] "LIPI MUTATION ANALYSIS"
[1] 3
  LIPI MUTATED LIPI WILD-TYPE 
             7            165 
  LIPI MUTATED LIPI WILD-TYPE 
             7            165 
[1] "OR4D10 MUTATION ANALYSIS"
[1] 3
  OR4D10 MUTATED OR4D10 WILD-TYPE 
               5              167 
  OR4D10 MUTATED OR4D10 WILD-TYPE 
               5              167 
[1] "OLFM3 MUTATION ANALYSIS"
[1] 3
  OLFM3 MUTATED OLFM3 WILD-TYPE 
              7             165 
  OLFM3 MUTATED OLFM3 WILD-TYPE 
              7             165 
[1] "SAGE1 MUTATION ANALYSIS"
[1] 3
  SAGE1 MUTATED SAGE1 WILD-TYPE 
             10             162 
  SAGE1 MUTATED SAGE1 WILD-TYPE 
             10             162 
[1] "OR2T8 MUTATION ANALYSIS"
[1] 3
  OR2T8 MUTATED OR2T8 WILD-TYPE 
              8             164 
  OR2T8 MUTATED OR2T8 WILD-TYPE 
              8             164 
[1] "FOXI1 MUTATION ANALYSIS"
[1] 3
  FOXI1 MUTATED FOXI1 WILD-TYPE 
              8             164 
  FOXI1 MUTATED FOXI1 WILD-TYPE 
              8             164 
[1] "HOXB1 MUTATION ANALYSIS"
[1] 3
  HOXB1 MUTATED HOXB1 WILD-TYPE 
              7             165 
  HOXB1 MUTATED HOXB1 WILD-TYPE 
              7             165 
[1] "NPSR1 MUTATION ANALYSIS"
[1] 3
  NPSR1 MUTATED NPSR1 WILD-TYPE 
              6             166 
  NPSR1 MUTATED NPSR1 WILD-TYPE 
              6             166 
[1] "LOC440563 MUTATION ANALYSIS"
[1] 3
  LOC440563 MUTATED LOC440563 WILD-TYPE 
                  7                 165 
  LOC440563 MUTATED LOC440563 WILD-TYPE 
                  7                 165 
[1] "COL25A1 MUTATION ANALYSIS"
[1] 3
  COL25A1 MUTATED COL25A1 WILD-TYPE 
               11               161 
  COL25A1 MUTATED COL25A1 WILD-TYPE 
               11               161 
[1] "SGIP1 MUTATION ANALYSIS"
[1] 3
  SGIP1 MUTATED SGIP1 WILD-TYPE 
             11             161 
  SGIP1 MUTATED SGIP1 WILD-TYPE 
             11             161 
[1] "OR5M10 MUTATION ANALYSIS"
[1] 3
  OR5M10 MUTATED OR5M10 WILD-TYPE 
               6              166 
  OR5M10 MUTATED OR5M10 WILD-TYPE 
               6              166 
[1] "RGS7 MUTATION ANALYSIS"
[1] 3
  RGS7 MUTATED RGS7 WILD-TYPE 
            12            160 
  RGS7 MUTATED RGS7 WILD-TYPE 
            12            160 
[1] "SVOP MUTATION ANALYSIS"
[1] 3
  SVOP MUTATED SVOP WILD-TYPE 
             7            165 
  SVOP MUTATED SVOP WILD-TYPE 
             7            165 
[1] "NOVA1 MUTATION ANALYSIS"
[1] 3
  NOVA1 MUTATED NOVA1 WILD-TYPE 
             10             162 
  NOVA1 MUTATED NOVA1 WILD-TYPE 
             10             162 
[1] "SLC22A6 MUTATION ANALYSIS"
[1] 3
  SLC22A6 MUTATED SLC22A6 WILD-TYPE 
                8               164 
  SLC22A6 MUTATED SLC22A6 WILD-TYPE 
                8               164 
[1] "C2ORF51 MUTATION ANALYSIS"
[1] 3
  C2ORF51 MUTATED C2ORF51 WILD-TYPE 
                5               167 
  C2ORF51 MUTATED C2ORF51 WILD-TYPE 
                5               167 
[1] "POTEA MUTATION ANALYSIS"
[1] 3
  POTEA MUTATED POTEA WILD-TYPE 
              7             165 
  POTEA MUTATED POTEA WILD-TYPE 
              7             165 
[1] "CXCR7 MUTATION ANALYSIS"
[1] 3
  CXCR7 MUTATED CXCR7 WILD-TYPE 
              4             168 
  CXCR7 MUTATED CXCR7 WILD-TYPE 
              4             168 
[1] "PTH MUTATION ANALYSIS"
[1] 3
  PTH MUTATED PTH WILD-TYPE 
            3           169 
  PTH MUTATED PTH WILD-TYPE 
            3           169 
[1] "PLD5 MUTATION ANALYSIS"
[1] 3
  PLD5 MUTATED PLD5 WILD-TYPE 
             8            164 
  PLD5 MUTATED PLD5 WILD-TYPE 
             8            164 
[1] "PCDH11X MUTATION ANALYSIS"
[1] 3
  PCDH11X MUTATED PCDH11X WILD-TYPE 
               26               146 
  PCDH11X MUTATED PCDH11X WILD-TYPE 
               26               146 
[1] "ZNF257 MUTATION ANALYSIS"
[1] 3
  ZNF257 MUTATED ZNF257 WILD-TYPE 
               8              164 
  ZNF257 MUTATED ZNF257 WILD-TYPE 
               8              164 
[1] "C8ORF37 MUTATION ANALYSIS"
[1] 3
  C8ORF37 MUTATED C8ORF37 WILD-TYPE 
                6               166 
  C8ORF37 MUTATED C8ORF37 WILD-TYPE 
                6               166 
[1] "TINAG MUTATION ANALYSIS"
[1] 3
  TINAG MUTATED TINAG WILD-TYPE 
              4             168 
  TINAG MUTATED TINAG WILD-TYPE 
              4             168 
[1] "WDR64 MUTATION ANALYSIS"
[1] 3
  WDR64 MUTATED WDR64 WILD-TYPE 
              7             165 
  WDR64 MUTATED WDR64 WILD-TYPE 
              7             165 
[1] "OR4P4 MUTATION ANALYSIS"
[1] 3
  OR4P4 MUTATED OR4P4 WILD-TYPE 
              6             166 
  OR4P4 MUTATED OR4P4 WILD-TYPE 
              6             166 
[1] "CD226 MUTATION ANALYSIS"
[1] 3
  CD226 MUTATED CD226 WILD-TYPE 
              7             165 
  CD226 MUTATED CD226 WILD-TYPE 
              7             165 
[1] "CRNN MUTATION ANALYSIS"
[1] 3
  CRNN MUTATED CRNN WILD-TYPE 
             9            163 
  CRNN MUTATED CRNN WILD-TYPE 
             9            163 
[1] "NPY1R MUTATION ANALYSIS"
[1] 3
  NPY1R MUTATED NPY1R WILD-TYPE 
              7             165 
  NPY1R MUTATED NPY1R WILD-TYPE 
              7             165 
[1] "TTK MUTATION ANALYSIS"
[1] 3
  TTK MUTATED TTK WILD-TYPE 
            8           164 
  TTK MUTATED TTK WILD-TYPE 
            8           164 
[1] "TLR4 MUTATION ANALYSIS"
[1] 3
  TLR4 MUTATED TLR4 WILD-TYPE 
            23            149 
  TLR4 MUTATED TLR4 WILD-TYPE 
            23            149 
[1] "CDH11 MUTATION ANALYSIS"
[1] 3
  CDH11 MUTATED CDH11 WILD-TYPE 
             15             157 
  CDH11 MUTATED CDH11 WILD-TYPE 
             15             157 
[1] "EYA4 MUTATION ANALYSIS"
[1] 3
  EYA4 MUTATED EYA4 WILD-TYPE 
            10            162 
  EYA4 MUTATED EYA4 WILD-TYPE 
            10            162 
[1] "FTSJD1 MUTATION ANALYSIS"
[1] 3
  FTSJD1 MUTATED FTSJD1 WILD-TYPE 
               6              166 
  FTSJD1 MUTATED FTSJD1 WILD-TYPE 
               6              166 
[1] "PTN MUTATION ANALYSIS"
[1] 3
  PTN MUTATED PTN WILD-TYPE 
            3           169 
  PTN MUTATED PTN WILD-TYPE 
            3           169 
[1] "EGFR MUTATION ANALYSIS"
[1] 3
  EGFR MUTATED EGFR WILD-TYPE 
            22            150 
  EGFR MUTATED EGFR WILD-TYPE 
            22            150 
[1] "HOXA5 MUTATION ANALYSIS"
[1] 3
  HOXA5 MUTATED HOXA5 WILD-TYPE 
              6             166 
  HOXA5 MUTATED HOXA5 WILD-TYPE 
              6             166 
[1] "SERPINB7 MUTATION ANALYSIS"
[1] 3
  SERPINB7 MUTATED SERPINB7 WILD-TYPE 
                 6                166 
  SERPINB7 MUTATED SERPINB7 WILD-TYPE 
                 6                166 
[1] "GPM6A MUTATION ANALYSIS"
[1] 3
  GPM6A MUTATED GPM6A WILD-TYPE 
              4             168 
  GPM6A MUTATED GPM6A WILD-TYPE 
              4             168 
[1] "HYAL4 MUTATION ANALYSIS"
[1] 3
  HYAL4 MUTATED HYAL4 WILD-TYPE 
              4             168 
  HYAL4 MUTATED HYAL4 WILD-TYPE 
              4             168 
[1] "ZNF578 MUTATION ANALYSIS"
[1] 3
  ZNF578 MUTATED ZNF578 WILD-TYPE 
               5              167 
  ZNF578 MUTATED ZNF578 WILD-TYPE 
               5              167 
[1] "LIN28B MUTATION ANALYSIS"
[1] 3
  LIN28B MUTATED LIN28B WILD-TYPE 
               5              167 
  LIN28B MUTATED LIN28B WILD-TYPE 
               5              167 
[1] "SPRR2E MUTATION ANALYSIS"
[1] 3
  SPRR2E MUTATED SPRR2E WILD-TYPE 
               4              168 
  SPRR2E MUTATED SPRR2E WILD-TYPE 
               4              168 
[1] "OR10AG1 MUTATION ANALYSIS"
[1] 3
  OR10AG1 MUTATED OR10AG1 WILD-TYPE 
                6               166 
  OR10AG1 MUTATED OR10AG1 WILD-TYPE 
                6               166 
[1] "ZWINT MUTATION ANALYSIS"
[1] 3
  ZWINT MUTATED ZWINT WILD-TYPE 
              6             166 
  ZWINT MUTATED ZWINT WILD-TYPE 
              6             166 
[1] "CD33 MUTATION ANALYSIS"
[1] 3
  CD33 MUTATED CD33 WILD-TYPE 
             7            165 
  CD33 MUTATED CD33 WILD-TYPE 
             7            165 
[1] "RERGL MUTATION ANALYSIS"
[1] 3
  RERGL MUTATED RERGL WILD-TYPE 
              5             167 
  RERGL MUTATED RERGL WILD-TYPE 
              5             167 
[1] "KLHL4 MUTATION ANALYSIS"
[1] 3
  KLHL4 MUTATED KLHL4 WILD-TYPE 
             10             162 
  KLHL4 MUTATED KLHL4 WILD-TYPE 
             10             162 
[1] "OLAH MUTATION ANALYSIS"
[1] 3
  OLAH MUTATED OLAH WILD-TYPE 
             7            165 
  OLAH MUTATED OLAH WILD-TYPE 
             7            165 
[1] "OR4A16 MUTATION ANALYSIS"
[1] 3
  OR4A16 MUTATED OR4A16 WILD-TYPE 
               8              164 
  OR4A16 MUTATED OR4A16 WILD-TYPE 
               8              164 
[1] "LILRB2 MUTATION ANALYSIS"
[1] 3
  LILRB2 MUTATED LILRB2 WILD-TYPE 
               9              163 
  LILRB2 MUTATED LILRB2 WILD-TYPE 
               9              163 
[1] "MS4A12 MUTATION ANALYSIS"
[1] 3
  MS4A12 MUTATED MS4A12 WILD-TYPE 
               5              167 
  MS4A12 MUTATED MS4A12 WILD-TYPE 
               5              167 
[1] "DTNA MUTATION ANALYSIS"
[1] 3
  DTNA MUTATED DTNA WILD-TYPE 
            11            161 
  DTNA MUTATED DTNA WILD-TYPE 
            11            161 
[1] "DBX2 MUTATION ANALYSIS"
[1] 3
  DBX2 MUTATED DBX2 WILD-TYPE 
             4            168 
  DBX2 MUTATED DBX2 WILD-TYPE 
             4            168 
[1] "ZNF804B MUTATION ANALYSIS"
[1] 3
  ZNF804B MUTATED ZNF804B WILD-TYPE 
               20               152 
  ZNF804B MUTATED ZNF804B WILD-TYPE 
               20               152 
[1] "GLIPR1 MUTATION ANALYSIS"
[1] 3
  GLIPR1 MUTATED GLIPR1 WILD-TYPE 
               6              166 
  GLIPR1 MUTATED GLIPR1 WILD-TYPE 
               6              166 
[1] "CNKSR2 MUTATION ANALYSIS"
[1] 3
  CNKSR2 MUTATED CNKSR2 WILD-TYPE 
               7              165 
  CNKSR2 MUTATED CNKSR2 WILD-TYPE 
               7              165 
[1] "HAS2 MUTATION ANALYSIS"
[1] 3
  HAS2 MUTATED HAS2 WILD-TYPE 
            10            162 
  HAS2 MUTATED HAS2 WILD-TYPE 
            10            162 
[1] "PJA1 MUTATION ANALYSIS"
[1] 3
  PJA1 MUTATED PJA1 WILD-TYPE 
             8            164 
  PJA1 MUTATED PJA1 WILD-TYPE 
             8            164 
[1] "CD1A MUTATION ANALYSIS"
[1] 3
  CD1A MUTATED CD1A WILD-TYPE 
             4            168 
  CD1A MUTATED CD1A WILD-TYPE 
             4            168 
[1] "FGB MUTATION ANALYSIS"
[1] 3
  FGB MUTATED FGB WILD-TYPE 
           11           161 
  FGB MUTATED FGB WILD-TYPE 
           11           161 
[1] "WDR16 MUTATION ANALYSIS"
[1] 3
  WDR16 MUTATED WDR16 WILD-TYPE 
              8             164 
  WDR16 MUTATED WDR16 WILD-TYPE 
              8             164 
[1] "SIGLEC9 MUTATION ANALYSIS"
[1] 3
  SIGLEC9 MUTATED SIGLEC9 WILD-TYPE 
               10               162 
  SIGLEC9 MUTATED SIGLEC9 WILD-TYPE 
               10               162 
[1] "OR11H4 MUTATION ANALYSIS"
[1] 3
  OR11H4 MUTATED OR11H4 WILD-TYPE 
               4              168 
  OR11H4 MUTATED OR11H4 WILD-TYPE 
               4              168 
[1] "OR10A5 MUTATION ANALYSIS"
[1] 3
  OR10A5 MUTATED OR10A5 WILD-TYPE 
               5              167 
  OR10A5 MUTATED OR10A5 WILD-TYPE 
               5              167 
[1] "DACH2 MUTATION ANALYSIS"
[1] 3
  DACH2 MUTATED DACH2 WILD-TYPE 
              9             163 
  DACH2 MUTATED DACH2 WILD-TYPE 
              9             163 
[1] "ESRRB MUTATION ANALYSIS"
[1] 3
  ESRRB MUTATED ESRRB WILD-TYPE 
              4             168 
  ESRRB MUTATED ESRRB WILD-TYPE 
              4             168 
[1] "PNLIPRP2 MUTATION ANALYSIS"
[1] 3
  PNLIPRP2 MUTATED PNLIPRP2 WILD-TYPE 
                 4                168 
  PNLIPRP2 MUTATED PNLIPRP2 WILD-TYPE 
                 4                168 
[1] "TBX18 MUTATION ANALYSIS"
[1] 3
  TBX18 MUTATED TBX18 WILD-TYPE 
              9             163 
  TBX18 MUTATED TBX18 WILD-TYPE 
              9             163 
[1] "TRIM48 MUTATION ANALYSIS"
[1] 3
  TRIM48 MUTATED TRIM48 WILD-TYPE 
               5              167 
  TRIM48 MUTATED TRIM48 WILD-TYPE 
               5              167 
[1] "DCDC1 MUTATION ANALYSIS"
[1] 3
  DCDC1 MUTATED DCDC1 WILD-TYPE 
              9             163 
  DCDC1 MUTATED DCDC1 WILD-TYPE 
              9             163 
[1] "GPRC6A MUTATION ANALYSIS"
[1] 3
  GPRC6A MUTATED GPRC6A WILD-TYPE 
              12              160 
  GPRC6A MUTATED GPRC6A WILD-TYPE 
              12              160 
[1] "OC90 MUTATION ANALYSIS"
[1] 3
  OC90 MUTATED OC90 WILD-TYPE 
             9            163 
  OC90 MUTATED OC90 WILD-TYPE 
             9            163 
[1] "MS4A14 MUTATION ANALYSIS"
[1] 3
  MS4A14 MUTATED MS4A14 WILD-TYPE 
              10              162 
  MS4A14 MUTATED MS4A14 WILD-TYPE 
              10              162 
[1] "TWISTNB MUTATION ANALYSIS"
[1] 3
  TWISTNB MUTATED TWISTNB WILD-TYPE 
                7               165 
  TWISTNB MUTATED TWISTNB WILD-TYPE 
                7               165 
[1] "OR52N1 MUTATION ANALYSIS"
[1] 3
  OR52N1 MUTATED OR52N1 WILD-TYPE 
               6              166 
  OR52N1 MUTATED OR52N1 WILD-TYPE 
               6              166 
[1] "OR5K3 MUTATION ANALYSIS"
[1] 3
  OR5K3 MUTATED OR5K3 WILD-TYPE 
              7             165 
  OR5K3 MUTATED OR5K3 WILD-TYPE 
              7             165 
[1] "ZNF713 MUTATION ANALYSIS"
[1] 3
  ZNF713 MUTATED ZNF713 WILD-TYPE 
               7              165 
  ZNF713 MUTATED ZNF713 WILD-TYPE 
               7              165 
[1] "C1ORF49 MUTATION ANALYSIS"
[1] 3
  C1ORF49 MUTATED C1ORF49 WILD-TYPE 
                6               166 
  C1ORF49 MUTATED C1ORF49 WILD-TYPE 
                6               166 
[1] "FRG1 MUTATION ANALYSIS"
[1] 3
  FRG1 MUTATED FRG1 WILD-TYPE 
             6            166 
  FRG1 MUTATED FRG1 WILD-TYPE 
             6            166 
[1] "KRTAP4-11 MUTATION ANALYSIS"
[1] 3
  KRTAP4-11 MUTATED KRTAP4-11 WILD-TYPE 
                  5                 167 
  KRTAP4-11 MUTATED KRTAP4-11 WILD-TYPE 
                  5                 167 
[1] "SLITRK6 MUTATION ANALYSIS"
[1] 3
  SLITRK6 MUTATED SLITRK6 WILD-TYPE 
               10               162 
  SLITRK6 MUTATED SLITRK6 WILD-TYPE 
               10               162 
[1] "TRIM72 MUTATION ANALYSIS"
[1] 3
  TRIM72 MUTATED TRIM72 WILD-TYPE 
               6              166 
  TRIM72 MUTATED TRIM72 WILD-TYPE 
               6              166 
[1] "KRTAP26-1 MUTATION ANALYSIS"
[1] 3
  KRTAP26-1 MUTATED KRTAP26-1 WILD-TYPE 
                  3                 169 
  KRTAP26-1 MUTATED KRTAP26-1 WILD-TYPE 
                  3                 169 
[1] "IVL MUTATION ANALYSIS"
[1] 3
  IVL MUTATED IVL WILD-TYPE 
            5           167 
  IVL MUTATED IVL WILD-TYPE 
            5           167 
[1] "ZNF623 MUTATION ANALYSIS"
[1] 3
  ZNF623 MUTATED ZNF623 WILD-TYPE 
               7              165 
  ZNF623 MUTATED ZNF623 WILD-TYPE 
               7              165 
[1] "BASP1 MUTATION ANALYSIS"
[1] 3
  BASP1 MUTATED BASP1 WILD-TYPE 
              4             168 
  BASP1 MUTATED BASP1 WILD-TYPE 
              4             168 
[1] "C10ORF71 MUTATION ANALYSIS"
[1] 3
  C10ORF71 MUTATED C10ORF71 WILD-TYPE 
                 6                166 
  C10ORF71 MUTATED C10ORF71 WILD-TYPE 
                 6                166 
[1] "NFKBID MUTATION ANALYSIS"
[1] 3
  NFKBID MUTATED NFKBID WILD-TYPE 
               5              167 
  NFKBID MUTATED NFKBID WILD-TYPE 
               5              167 
[1] "CLVS2 MUTATION ANALYSIS"
[1] 3
  CLVS2 MUTATED CLVS2 WILD-TYPE 
              5             167 
  CLVS2 MUTATED CLVS2 WILD-TYPE 
              5             167 
[1] "CYLC2 MUTATION ANALYSIS"
[1] 3
  CYLC2 MUTATED CYLC2 WILD-TYPE 
              7             165 
  CYLC2 MUTATED CYLC2 WILD-TYPE 
              7             165 
[1] "REG3G MUTATION ANALYSIS"
[1] 3
  REG3G MUTATED REG3G WILD-TYPE 
              9             163 
  REG3G MUTATED REG3G WILD-TYPE 
              9             163 
[1] "ANKRD56 MUTATION ANALYSIS"
[1] 3
  ANKRD56 MUTATED ANKRD56 WILD-TYPE 
               11               161 
  ANKRD56 MUTATED ANKRD56 WILD-TYPE 
               11               161 
[1] "CYP2C19 MUTATION ANALYSIS"
[1] 3
  CYP2C19 MUTATED CYP2C19 WILD-TYPE 
                7               165 
  CYP2C19 MUTATED CYP2C19 WILD-TYPE 
                7               165 
[1] "KRTAP10-4 MUTATION ANALYSIS"
[1] 3
  KRTAP10-4 MUTATED KRTAP10-4 WILD-TYPE 
                  6                 166 
  KRTAP10-4 MUTATED KRTAP10-4 WILD-TYPE 
                  6                 166 
[1] "OR5L2 MUTATION ANALYSIS"
[1] 3
  OR5L2 MUTATED OR5L2 WILD-TYPE 
             13             159 
  OR5L2 MUTATED OR5L2 WILD-TYPE 
             13             159 
[1] "CHRND MUTATION ANALYSIS"
[1] 3
  CHRND MUTATED CHRND WILD-TYPE 
              8             164 
  CHRND MUTATED CHRND WILD-TYPE 
              8             164 
[1] "IL31 MUTATION ANALYSIS"
[1] 3
  IL31 MUTATED IL31 WILD-TYPE 
             3            169 
  IL31 MUTATED IL31 WILD-TYPE 
             3            169 
[1] "LRRTM3 MUTATION ANALYSIS"
[1] 3
  LRRTM3 MUTATED LRRTM3 WILD-TYPE 
               7              165 
  LRRTM3 MUTATED LRRTM3 WILD-TYPE 
               7              165 
[1] "SMARCA4 MUTATION ANALYSIS"
[1] 3
  SMARCA4 MUTATED SMARCA4 WILD-TYPE 
               14               158 
  SMARCA4 MUTATED SMARCA4 WILD-TYPE 
               14               158 
[1] "SLC39A12 MUTATION ANALYSIS"
[1] 3
  SLC39A12 MUTATED SLC39A12 WILD-TYPE 
                11                161 
  SLC39A12 MUTATED SLC39A12 WILD-TYPE 
                11                161 
[1] "OR52K1 MUTATION ANALYSIS"
[1] 3
  OR52K1 MUTATED OR52K1 WILD-TYPE 
               6              166 
  OR52K1 MUTATED OR52K1 WILD-TYPE 
               6              166 
[1] "SLCO6A1 MUTATION ANALYSIS"
[1] 3
  SLCO6A1 MUTATED SLCO6A1 WILD-TYPE 
                7               165 
  SLCO6A1 MUTATED SLCO6A1 WILD-TYPE 
                7               165 
[1] "OR10X1 MUTATION ANALYSIS"
[1] 3
  OR10X1 MUTATED OR10X1 WILD-TYPE 
               8              164 
  OR10X1 MUTATED OR10X1 WILD-TYPE 
               8              164 
[1] "PSG3 MUTATION ANALYSIS"
[1] 3
  PSG3 MUTATED PSG3 WILD-TYPE 
             5            167 
  PSG3 MUTATED PSG3 WILD-TYPE 
             5            167 
[1] "DEFB116 MUTATION ANALYSIS"
[1] 3
  DEFB116 MUTATED DEFB116 WILD-TYPE 
                3               169 
  DEFB116 MUTATED DEFB116 WILD-TYPE 
                3               169 
[1] "ZCCHC5 MUTATION ANALYSIS"
[1] 3
  ZCCHC5 MUTATED ZCCHC5 WILD-TYPE 
              10              162 
  ZCCHC5 MUTATED ZCCHC5 WILD-TYPE 
              10              162 
[1] "data2feature, selection=ALL"
 [1] "YEARSTOBIRTH"                          
 [2] "DAYSTODEATH"                           
 [3] "DAYSTOLASTFOLLOWUP"                    
 [4] "VITALSTATUS"                           
 [5] "DCCUPLOADDATE"                         
 [6] "PRIMARYSITEOFDESEASE"                  
 [7] "GENDER"                                
 [8] "DATEOFINITIALPATHOLOGICDIAGNOSIS"      
 [9] "DAYSTOLASTKNOWNALIVE"                  
[10] "KARNOFSKYPERFORMANCESCORE"             
[11] "HISTOLOGICALTYPE"                      
[12] "PATHOLOGICSPREAD(PT)"                  
[13] "PATHOLOGICSPREAD(PN)"                  
[14] "PATHOLOGICSPREAD(M)"                   
[15] "TUMORSTAGE"                            
[16] "RADIATIONS.RADIATION.REGIMENINDICATION"
[17] "NUMBERPACKYEARSSMOKED"                 
[18] "STOPPEDSMOKINGYEAR"                    
[19] "TOBACCOSMOKINGHISTORYINDICATOR"        
[20] "YEAROFTOBACCOSMOKINGONSET"             
[21] "BATCHNUMBER"                           

Input Data has 21 rows and 172 columns.

[1] "Batch" "21"   
[1] "Last Follow UP"
TCGA-05-4244 TCGA-05-4249 TCGA-05-4250 TCGA-05-4382 TCGA-05-4384 TCGA-05-4389 
          NA         1158          121          606          426           NA 
TCGA-05-4390 TCGA-05-4395 TCGA-05-4396 TCGA-05-4397 TCGA-05-4398 TCGA-05-4402 
        1126           NA          303           NA         1431           NA 
TCGA-05-4403 TCGA-05-4405 TCGA-05-4410 TCGA-05-4415 TCGA-05-4417 TCGA-05-4418 
          NA          610           NA           90          454           NA 
TCGA-05-4420 TCGA-05-4422 TCGA-05-4424 TCGA-05-4425 TCGA-05-4426 TCGA-05-4427 
         911           NA          913           NA          791          791 
TCGA-05-4430 TCGA-05-4432 TCGA-05-4433 TCGA-05-4434 TCGA-05-5420 TCGA-05-5423 
         761          761          730          457           31          151 
TCGA-05-5425 TCGA-05-5428 TCGA-05-5429 TCGA-05-5715 TCGA-35-3615 TCGA-35-4122 
          90           NA           30           62           14          224 
TCGA-35-4123 TCGA-35-5375 TCGA-38-4625 TCGA-38-4626 TCGA-38-4627 TCGA-38-4628 
         181          264         1448         2595         1147         1491 
TCGA-38-4629 TCGA-38-4630 TCGA-38-4631 TCGA-38-4632 TCGA-38-6178 TCGA-44-2655 
         863         1073          354         1357          158          574 
TCGA-44-2656 TCGA-44-2657 TCGA-44-2659 TCGA-44-2661 TCGA-44-2662 TCGA-44-2665 
         581          400          529          103          480          400 
TCGA-44-2666 TCGA-44-2668 TCGA-44-3396 TCGA-44-3398 TCGA-44-3918 TCGA-44-3919 
          97          246          311          253          196          189 
TCGA-44-4112 TCGA-44-5643 TCGA-44-5645 TCGA-44-6144 TCGA-44-6145 TCGA-44-6146 
         140          106          208            9          102          302 
TCGA-44-6147 TCGA-44-6148 TCGA-44-6774 TCGA-44-6775 TCGA-44-6776 TCGA-44-6777 
         236           95          165           82         1938           NA 
TCGA-44-6778 TCGA-44-6779 TCGA-49-4486 TCGA-49-4487 TCGA-49-4488 TCGA-49-4490 
        1110           NA         2318           NA           NA           NA 
TCGA-49-4494 TCGA-49-4501 TCGA-49-4505 TCGA-49-4506 TCGA-49-4507 TCGA-49-4510 
        1081         1421          428          999          268          896 
TCGA-49-4512 TCGA-49-4514 TCGA-49-6742 TCGA-49-6743 TCGA-49-6744 TCGA-49-6745 
          NA         1314          457          369          395          150 
TCGA-49-6767 TCGA-50-5044 TCGA-50-5045 TCGA-50-5049 TCGA-50-5051 TCGA-50-5055 
          NA           NA         2174         1485          455          785 
TCGA-50-5066 TCGA-50-5068 TCGA-50-5072 TCGA-50-5930 TCGA-50-5931 TCGA-50-5932 
         297         1499          245          282          267         1091 
TCGA-50-5933 TCGA-50-5935 TCGA-50-5936 TCGA-50-5939 TCGA-50-5941 TCGA-50-5942 
        2369          653          257          460          285          135 
TCGA-50-5944 TCGA-50-5946 TCGA-50-6590 TCGA-50-6591 TCGA-50-6592 TCGA-50-6593 
         373          349           NA           NA           NA           NA 
TCGA-50-6594 TCGA-50-6595 TCGA-50-6597 TCGA-55-1592 TCGA-55-1594 TCGA-55-1595 
          NA           NA         1015          701         1178         1479 
TCGA-55-1596 TCGA-55-5899 TCGA-55-6543 TCGA-55-6642 TCGA-55-6712 TCGA-64-1676 
        1374           87            2          992           24         1728 
TCGA-64-1677 TCGA-64-1678 TCGA-64-1680 TCGA-64-5774 TCGA-64-5775 TCGA-64-5778 
         628         1189         1126         2550            3          926 
TCGA-64-5779 TCGA-64-5781 TCGA-64-5815 TCGA-67-3770 TCGA-67-3771 TCGA-67-3772 
         507         1202          223           30           60           18 
TCGA-67-3773 TCGA-67-3774 TCGA-67-4679 TCGA-67-6215 TCGA-67-6216 TCGA-67-6217 
          62           18           NA           27           21          422 
TCGA-71-6725 TCGA-73-4658 TCGA-73-4659 TCGA-73-4662 TCGA-73-4666 TCGA-73-4668 
          61         1599          711          911          617          467 
TCGA-73-4670 TCGA-73-4675 TCGA-73-4676 TCGA-73-4677 TCGA-75-5122 TCGA-75-5125 
          14           40          122           38           NA           NA 
TCGA-75-5126 TCGA-75-5146 TCGA-75-5147 TCGA-75-6203 TCGA-75-6205 TCGA-75-6206 
          NA           NA           NA           NA           NA           NA 
TCGA-75-6207 TCGA-75-6211 TCGA-75-6212 TCGA-80-5611 TCGA-86-6562 TCGA-91-6828 
          NA           NA           NA           NA           NA           37 
TCGA-91-6829 TCGA-91-6831 TCGA-91-6835 TCGA-91-6836 
          NA           39           35           11 
Variable 1:'AGE':	nDistinctValues=44,	numeric=TRUE,	binary=FALSE,	exclude=FALSE.
Variable 2:'DAYSTODEATH':	nDistinctValues=51,	numeric=TRUE,	binary=FALSE,	exclude=TRUE.
Variable 3:'DAYSTOLASTFOLLOWUP':	nDistinctValues=122,	numeric=TRUE,	binary=FALSE,	exclude=TRUE.
Variable 4:'VITALSTATUS':	nDistinctValues=2,	numeric=TRUE,	binary=TRUE,	exclude=FALSE.
Variable 5:'DCCUPLOADDAY':	nDistinctValues=1,	numeric=FALSE,	binary=FALSE,	exclude=TRUE.
Variable 6:'PRIMARY.SITE.OF.DISEASE':	nDistinctValues=1,	numeric=FALSE,	binary=FALSE,	exclude=TRUE.
Variable 7:'GENDER':	nDistinctValues=2,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 8:'DAYOFINITIALPATHOLOGICDIAGNOSIS':	nDistinctValues=18,	numeric=TRUE,	binary=FALSE,	exclude=TRUE.
Variable 9:'DAYSTOLASTKNOWNALIVE':	nDistinctValues=71,	numeric=TRUE,	binary=FALSE,	exclude=TRUE.
Variable 10:'KARNOFSKY.PERFORMANCE.SCORE':	nDistinctValues=6,	numeric=TRUE,	binary=FALSE,	exclude=FALSE.
Variable 11:'HISTOLOGICAL.TYPE':	nDistinctValues=11,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 12:'PATHOLOGY.T':	nDistinctValues=8,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 13:'PATHOLOGY.N':	nDistinctValues=5,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 14:'PATHOLOGICSPREAD(M)':	nDistinctValues=3,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 15:'TUMOR.STAGE':	nDistinctValues=7,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 16:'RADIATIONS.RADIATION.REGIMENINDICATION':	nDistinctValues=2,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 17:'NUMBERPACKYEARSSMOKED':	nDistinctValues=47,	numeric=TRUE,	binary=FALSE,	exclude=FALSE.
Variable 18:'STOPPEDSMOKINGYEAR':	nDistinctValues=40,	numeric=TRUE,	binary=FALSE,	exclude=FALSE.
Variable 19:'TOBACCOSMOKINGHISTORYINDICATOR':	nDistinctValues=4,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 20:'YEAROFTOBACCOSMOKINGONSET':	nDistinctValues=39,	numeric=TRUE,	binary=FALSE,	exclude=FALSE.
Variable 21:'BATCH.NUMBER':	nDistinctValues=6,	numeric=FALSE,	binary=FALSE,	exclude=TRUE.
[1] "rownames(nsurv.mat)"
 [1] "AGE"                                   
 [2] "GENDER"                                
 [3] "KARNOFSKY.PERFORMANCE.SCORE"           
 [4] "HISTOLOGICAL.TYPE"                     
 [5] "PATHOLOGY.T"                           
 [6] "PATHOLOGY.N"                           
 [7] "PATHOLOGICSPREAD(M)"                   
 [8] "TUMOR.STAGE"                           
 [9] "RADIATIONS.RADIATION.REGIMENINDICATION"
[10] "NUMBERPACKYEARSSMOKED"                 
[11] "STOPPEDSMOKINGYEAR"                    
[12] "TOBACCOSMOKINGHISTORYINDICATOR"        
[13] "YEAROFTOBACCOSMOKINGONSET"             
[1] "TUMOR.?STAGE" "8"           
[1] "stage2"
vv
 1  2  3  4 
88 33 39  9 
[1] "TUMOR.?GRADE"
[1] "PATHOLOGY.T" "5"          
[1] "PATHOLOGY.N" "6"          
Output Data has 172 columns, 1 survival variables, and 13 non-survival variables.
AGE, nv=44, binary=FALSE, numeric=TRUE
GENDER, nv=2, binary=FALSE, numeric=FALSE
KARNOFSKY.PERFORMANCE.SCORE, nv=6, binary=FALSE, numeric=TRUE
HISTOLOGICAL.TYPE, nv=11, binary=FALSE, numeric=FALSE
PATHOLOGY.T, nv=4, binary=FALSE, numeric=TRUE
[1] "grepl('PATHOLOGY.T',vnm)"
vv
 T1  T2  T3  T4 
 41 108  14   8 
[1] "table(vv)"
vv
 T1  T2  T3  T4 
 41 108  14   8 
$ClinVariableName
[1] "PATHOLOGY.T"

$Table
vv
 T1  T2  T3  T4 
 41 108  14   8 

$nClasses
[1] 4

$ClinVariableType
[1] "multiclass(4)"


 T1  T2  T3  T4 
 41 108  14   8 
PATHOLOGY.N, nv=4, binary=FALSE, numeric=TRUE
[1] "grepl('PATHOLOGY.N',vnm)"
vv
N0 N1 N2 N3 
95 37 34  1 
[1] "table(vv)"
vv
   N0    N1 N2+N3 
   95    37    35 
$ClinVariableName
[1] "PATHOLOGY.N"

$Table
vv
N0 N1 N2 N3 
95 37 34  1 

$nClasses
[1] 3

$ClinVariableType
[1] "multiclass(3)"


   N0    N1 N2+N3 
   95    37    35 
PATHOLOGICSPREAD(M), nv=3, binary=FALSE, numeric=FALSE
TUMOR.STAGE, nv=4, binary=FALSE, numeric=TRUE
[1] "grepl('TUMOR.?STAGE',vnm)"
vv
  I  II III  IV 
 88  33  39   9 
[1] "table(vv)"
vv
  I  II III  IV 
 88  33  39   9 
$ClinVariableName
[1] "TUMOR.STAGE"

$Table
vv
  I  II III  IV 
 88  33  39   9 

$nClasses
[1] 4

$ClinVariableType
[1] "multiclass(4)"


  I  II III  IV 
 88  33  39   9 
RADIATIONS.RADIATION.REGIMENINDICATION, nv=2, binary=FALSE, numeric=FALSE
NUMBERPACKYEARSSMOKED, nv=47, binary=FALSE, numeric=TRUE
STOPPEDSMOKINGYEAR, nv=40, binary=FALSE, numeric=TRUE
TOBACCOSMOKINGHISTORYINDICATOR, nv=4, binary=FALSE, numeric=FALSE
YEAROFTOBACCOSMOKINGONSET, nv=39, binary=FALSE, numeric=TRUE

Clustering(1) Variable = KEAP1 MUTATION ANALYSIS
D1V1, survival
                 sevent
clus2              0  1
  KEAP1 MUTATED   17 11
  KEAP1 WILD-TYPE 82 39
  KEAP1 MUTATED KEAP1 WILD-TYPE 
             28             121 
  KEAP1 MUTATED KEAP1 WILD-TYPE 
             11              39 
$`KEAP1 MUTATED`
TCGA-05-4384 TCGA-05-4418 TCGA-35-3615 TCGA-35-5375 TCGA-38-4631 TCGA-44-2655 
       14.01         8.98         0.46         8.68        11.64        18.87 
TCGA-44-6776 TCGA-44-6778 TCGA-44-6779 TCGA-49-4486 TCGA-49-4488 TCGA-49-4506 
       63.72        36.49        16.41        76.21        28.57        32.84 
TCGA-49-4507 TCGA-49-4514 TCGA-49-6742 TCGA-49-6743 TCGA-50-5051 TCGA-50-5068 
        8.81        43.20        15.02        12.13        14.96        49.28 
TCGA-50-5936 TCGA-50-5939 TCGA-55-5899 TCGA-64-5781 TCGA-67-3771 TCGA-67-3774 
        8.45        15.12         2.86        39.52         1.97         0.59 
TCGA-73-4666 TCGA-73-4670 TCGA-73-4676 TCGA-73-4677 
       20.28         0.46         4.01         1.25 

$`KEAP1 WILD-TYPE`
TCGA-05-4249 TCGA-05-4250 TCGA-05-4382 TCGA-05-4390 TCGA-05-4396 TCGA-05-4397 
       38.07         3.98        19.92        37.02         9.96        24.03 
TCGA-05-4398 TCGA-05-4402 TCGA-05-4405 TCGA-05-4415 TCGA-05-4417 TCGA-05-4420 
       47.05         8.02        20.05         2.96        14.93        29.95 
TCGA-05-4424 TCGA-05-4426 TCGA-05-4427 TCGA-05-4430 TCGA-05-4432 TCGA-05-4433 
       30.02        26.01        26.01        25.02        25.02        24.00 
TCGA-05-4434 TCGA-05-5420 TCGA-05-5423 TCGA-05-5425 TCGA-05-5429 TCGA-05-5715 
       15.02         1.02         4.96         2.96         0.99         2.04 
TCGA-35-4122 TCGA-35-4123 TCGA-38-4625 TCGA-38-4626 TCGA-38-4627 TCGA-38-4628 
        7.36         5.95        47.61        85.32        37.71        49.02 
TCGA-38-4629 TCGA-38-4630 TCGA-38-4632 TCGA-38-6178 TCGA-44-2656 TCGA-44-2657 
       28.37        35.28        44.61         5.19        19.10        13.15 
TCGA-44-2659 TCGA-44-2661 TCGA-44-2662 TCGA-44-2665 TCGA-44-2666 TCGA-44-2668 
       17.39         3.39        15.78        13.15         3.19         8.09 
TCGA-44-3396 TCGA-44-3398 TCGA-44-3918 TCGA-44-3919 TCGA-44-4112 TCGA-44-5643 
       10.22         8.32         6.44         6.21         4.60         3.48 
TCGA-44-5645 TCGA-44-6144 TCGA-44-6145 TCGA-44-6146 TCGA-44-6147 TCGA-44-6148 
        6.84         0.30         3.35         9.93         7.76         3.12 
TCGA-44-6774 TCGA-44-6775 TCGA-44-6777 TCGA-49-4487 TCGA-49-4490 TCGA-49-4494 
        5.42         2.70        32.45        28.11        12.66        35.54 
TCGA-49-4501 TCGA-49-4505 TCGA-49-4510 TCGA-49-4512 TCGA-49-6744 TCGA-49-6745 
       46.72        14.07        29.46        29.75        12.99         4.93 
TCGA-50-5044 TCGA-50-5045 TCGA-50-5049 TCGA-50-5055 TCGA-50-5066 TCGA-50-5072 
       20.48        71.47        48.82        25.81         9.76         8.05 
TCGA-50-5930 TCGA-50-5931 TCGA-50-5932 TCGA-50-5933 TCGA-50-5935 TCGA-50-5941 
        9.27         8.78        35.87        77.88        21.47         9.37 
TCGA-50-5942 TCGA-50-5944 TCGA-50-5946 TCGA-50-6590 TCGA-50-6591 TCGA-50-6592 
        4.44        12.26        11.47        42.31         3.88        25.51 
TCGA-50-6593 TCGA-50-6594 TCGA-50-6595 TCGA-50-6597 TCGA-55-1592 TCGA-55-1594 
       11.05        12.16         6.21        33.37        23.05        38.73 
TCGA-55-1595 TCGA-55-1596 TCGA-55-6543 TCGA-55-6642 TCGA-55-6712 TCGA-64-1676 
       48.62        45.17         0.07        32.61         0.79        56.81 
TCGA-64-1677 TCGA-64-1678 TCGA-64-1680 TCGA-64-5774 TCGA-64-5775 TCGA-64-5778 
       20.65        39.09        37.02        83.84         0.10        30.44 
TCGA-64-5779 TCGA-64-5815 TCGA-67-3770 TCGA-67-3772 TCGA-67-3773 TCGA-67-6215 
       16.67         7.33         0.99         0.59         2.04         0.89 
TCGA-67-6216 TCGA-67-6217 TCGA-71-6725 TCGA-73-4658 TCGA-73-4659 TCGA-73-4662 
        0.69        13.87         2.01        52.57        23.38        29.95 
TCGA-73-4668 TCGA-73-4675 TCGA-91-6828 TCGA-91-6829 TCGA-91-6831 TCGA-91-6835 
       15.35         1.32         1.22        41.33         1.28         1.15 
TCGA-91-6836 
        0.36 

  KEAP1 MUTATED KEAP1 WILD-TYPE 
           0.46            0.07 
  KEAP1 MUTATED KEAP1 WILD-TYPE 
          76.21           85.32 
  KEAP1 MUTATED KEAP1 WILD-TYPE 
         14.485          13.150 
[1] "0.5 - 76.2 (14.5)" "0.1 - 85.3 (13.2)"
     TCGA-05-4249      TCGA-05-4250      TCGA-05-4382      TCGA-05-4384 
"KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE"   "KEAP1 MUTATED" 
     TCGA-05-4390      TCGA-05-4396      TCGA-05-4397      TCGA-05-4398 
"KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" 
     TCGA-05-4402      TCGA-05-4405      TCGA-05-4415      TCGA-05-4417 
"KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" 
     TCGA-05-4418      TCGA-05-4420      TCGA-05-4424      TCGA-05-4426 
  "KEAP1 MUTATED" "KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" 
     TCGA-05-4427      TCGA-05-4430      TCGA-05-4432      TCGA-05-4433 
"KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" 
     TCGA-05-4434      TCGA-05-5420      TCGA-05-5423      TCGA-05-5425 
"KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" 
     TCGA-05-5429      TCGA-05-5715      TCGA-35-3615      TCGA-35-4122 
"KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE"   "KEAP1 MUTATED" "KEAP1 WILD-TYPE" 
     TCGA-35-4123      TCGA-35-5375      TCGA-38-4625      TCGA-38-4626 
"KEAP1 WILD-TYPE"   "KEAP1 MUTATED" "KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" 
     TCGA-38-4627      TCGA-38-4628      TCGA-38-4629      TCGA-38-4630 
"KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" 
     TCGA-38-4631      TCGA-38-4632      TCGA-38-6178      TCGA-44-2655 
  "KEAP1 MUTATED" "KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE"   "KEAP1 MUTATED" 
     TCGA-44-2656      TCGA-44-2657      TCGA-44-2659      TCGA-44-2661 
"KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" 
     TCGA-44-2662      TCGA-44-2665      TCGA-44-2666      TCGA-44-2668 
"KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" 
     TCGA-44-3396      TCGA-44-3398      TCGA-44-3918      TCGA-44-3919 
"KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" 
     TCGA-44-4112      TCGA-44-5643      TCGA-44-5645      TCGA-44-6144 
"KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" 
     TCGA-44-6145      TCGA-44-6146      TCGA-44-6147      TCGA-44-6148 
"KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" 
     TCGA-44-6774      TCGA-44-6775      TCGA-44-6776      TCGA-44-6777 
"KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE"   "KEAP1 MUTATED" "KEAP1 WILD-TYPE" 
     TCGA-44-6778      TCGA-44-6779      TCGA-49-4486      TCGA-49-4487 
  "KEAP1 MUTATED"   "KEAP1 MUTATED"   "KEAP1 MUTATED" "KEAP1 WILD-TYPE" 
     TCGA-49-4488      TCGA-49-4490      TCGA-49-4494      TCGA-49-4501 
  "KEAP1 MUTATED" "KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" 
     TCGA-49-4505      TCGA-49-4506      TCGA-49-4507      TCGA-49-4510 
"KEAP1 WILD-TYPE"   "KEAP1 MUTATED"   "KEAP1 MUTATED" "KEAP1 WILD-TYPE" 
     TCGA-49-4512      TCGA-49-4514      TCGA-49-6742      TCGA-49-6743 
"KEAP1 WILD-TYPE"   "KEAP1 MUTATED"   "KEAP1 MUTATED"   "KEAP1 MUTATED" 
     TCGA-49-6744      TCGA-49-6745      TCGA-50-5044      TCGA-50-5045 
"KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" 
     TCGA-50-5049      TCGA-50-5051      TCGA-50-5055      TCGA-50-5066 
"KEAP1 WILD-TYPE"   "KEAP1 MUTATED" "KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" 
     TCGA-50-5068      TCGA-50-5072      TCGA-50-5930      TCGA-50-5931 
  "KEAP1 MUTATED" "KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" 
     TCGA-50-5932      TCGA-50-5933      TCGA-50-5935      TCGA-50-5936 
"KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE"   "KEAP1 MUTATED" 
     TCGA-50-5939      TCGA-50-5941      TCGA-50-5942      TCGA-50-5944 
  "KEAP1 MUTATED" "KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" 
     TCGA-50-5946      TCGA-50-6590      TCGA-50-6591      TCGA-50-6592 
"KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" 
     TCGA-50-6593      TCGA-50-6594      TCGA-50-6595      TCGA-50-6597 
"KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" 
     TCGA-55-1592      TCGA-55-1594      TCGA-55-1595      TCGA-55-1596 
"KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" 
     TCGA-55-5899      TCGA-55-6543      TCGA-55-6642      TCGA-55-6712 
  "KEAP1 MUTATED" "KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" 
     TCGA-64-1676      TCGA-64-1677      TCGA-64-1678      TCGA-64-1680 
"KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" 
     TCGA-64-5774      TCGA-64-5775      TCGA-64-5778      TCGA-64-5779 
"KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" 
     TCGA-64-5781      TCGA-64-5815      TCGA-67-3770      TCGA-67-3771 
  "KEAP1 MUTATED" "KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE"   "KEAP1 MUTATED" 
     TCGA-67-3772      TCGA-67-3773      TCGA-67-3774      TCGA-67-6215 
"KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE"   "KEAP1 MUTATED" "KEAP1 WILD-TYPE" 
     TCGA-67-6216      TCGA-67-6217      TCGA-71-6725      TCGA-73-4658 
"KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" 
     TCGA-73-4659      TCGA-73-4662      TCGA-73-4666      TCGA-73-4668 
"KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE"   "KEAP1 MUTATED" "KEAP1 WILD-TYPE" 
     TCGA-73-4670      TCGA-73-4675      TCGA-73-4676      TCGA-73-4677 
  "KEAP1 MUTATED" "KEAP1 WILD-TYPE"   "KEAP1 MUTATED"   "KEAP1 MUTATED" 
     TCGA-91-6828      TCGA-91-6829      TCGA-91-6831      TCGA-91-6835 
"KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" 
     TCGA-91-6836 
"KEAP1 WILD-TYPE" 
     TCGA-05-4249      TCGA-05-4250      TCGA-05-4382      TCGA-05-4384 
"KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE"   "KEAP1 MUTATED" 
     TCGA-05-4390      TCGA-05-4396      TCGA-05-4397      TCGA-05-4398 
"KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" 
     TCGA-05-4402      TCGA-05-4405      TCGA-05-4415      TCGA-05-4417 
"KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" 
     TCGA-05-4418      TCGA-05-4420      TCGA-05-4424      TCGA-05-4426 
  "KEAP1 MUTATED" "KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" 
     TCGA-05-4427      TCGA-05-4430      TCGA-05-4432      TCGA-05-4433 
"KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" 
     TCGA-05-4434      TCGA-05-5420      TCGA-05-5423      TCGA-05-5425 
"KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" 
     TCGA-05-5429      TCGA-05-5715      TCGA-35-3615      TCGA-35-4122 
"KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE"   "KEAP1 MUTATED" "KEAP1 WILD-TYPE" 
     TCGA-35-4123      TCGA-35-5375      TCGA-38-4625      TCGA-38-4626 
"KEAP1 WILD-TYPE"   "KEAP1 MUTATED" "KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" 
     TCGA-38-4627      TCGA-38-4628      TCGA-38-4629      TCGA-38-4630 
"KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" 
     TCGA-38-4631      TCGA-38-4632      TCGA-38-6178      TCGA-44-2655 
  "KEAP1 MUTATED" "KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE"   "KEAP1 MUTATED" 
     TCGA-44-2656      TCGA-44-2657      TCGA-44-2659      TCGA-44-2661 
"KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" 
     TCGA-44-2662      TCGA-44-2665      TCGA-44-2666      TCGA-44-2668 
"KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" 
     TCGA-44-3396      TCGA-44-3398      TCGA-44-3918      TCGA-44-3919 
"KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" 
     TCGA-44-4112      TCGA-44-5643      TCGA-44-5645      TCGA-44-6144 
"KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" 
     TCGA-44-6145      TCGA-44-6146      TCGA-44-6147      TCGA-44-6148 
"KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" 
     TCGA-44-6774      TCGA-44-6775      TCGA-44-6776      TCGA-44-6777 
"KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE"   "KEAP1 MUTATED" "KEAP1 WILD-TYPE" 
     TCGA-44-6778      TCGA-44-6779      TCGA-49-4486      TCGA-49-4487 
  "KEAP1 MUTATED"   "KEAP1 MUTATED"   "KEAP1 MUTATED" "KEAP1 WILD-TYPE" 
     TCGA-49-4488      TCGA-49-4490      TCGA-49-4494      TCGA-49-4501 
  "KEAP1 MUTATED" "KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" 
     TCGA-49-4505      TCGA-49-4506      TCGA-49-4507      TCGA-49-4510 
"KEAP1 WILD-TYPE"   "KEAP1 MUTATED"   "KEAP1 MUTATED" "KEAP1 WILD-TYPE" 
     TCGA-49-4512      TCGA-49-4514      TCGA-49-6742      TCGA-49-6743 
"KEAP1 WILD-TYPE"   "KEAP1 MUTATED"   "KEAP1 MUTATED"   "KEAP1 MUTATED" 
     TCGA-49-6744      TCGA-49-6745      TCGA-50-5044      TCGA-50-5045 
"KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" 
     TCGA-50-5049      TCGA-50-5051      TCGA-50-5055      TCGA-50-5066 
"KEAP1 WILD-TYPE"   "KEAP1 MUTATED" "KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" 
     TCGA-50-5068      TCGA-50-5072      TCGA-50-5930      TCGA-50-5931 
  "KEAP1 MUTATED" "KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" 
     TCGA-50-5932      TCGA-50-5933      TCGA-50-5935      TCGA-50-5936 
"KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE"   "KEAP1 MUTATED" 
     TCGA-50-5939      TCGA-50-5941      TCGA-50-5942      TCGA-50-5944 
  "KEAP1 MUTATED" "KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" 
     TCGA-50-5946      TCGA-50-6590      TCGA-50-6591      TCGA-50-6592 
"KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" 
     TCGA-50-6593      TCGA-50-6594      TCGA-50-6595      TCGA-50-6597 
"KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" 
     TCGA-55-1592      TCGA-55-1594      TCGA-55-1595      TCGA-55-1596 
"KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" 
     TCGA-55-5899      TCGA-55-6543      TCGA-55-6642      TCGA-55-6712 
  "KEAP1 MUTATED" "KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" 
     TCGA-64-1676      TCGA-64-1677      TCGA-64-1678      TCGA-64-1680 
"KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" 
     TCGA-64-5774      TCGA-64-5775      TCGA-64-5778      TCGA-64-5779 
"KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" 
     TCGA-64-5781      TCGA-64-5815      TCGA-67-3770      TCGA-67-3771 
  "KEAP1 MUTATED" "KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE"   "KEAP1 MUTATED" 
     TCGA-67-3772      TCGA-67-3773      TCGA-67-3774      TCGA-67-6215 
"KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE"   "KEAP1 MUTATED" "KEAP1 WILD-TYPE" 
     TCGA-67-6216      TCGA-67-6217      TCGA-71-6725      TCGA-73-4658 
"KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" 
     TCGA-73-4659      TCGA-73-4662      TCGA-73-4666      TCGA-73-4668 
"KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE"   "KEAP1 MUTATED" "KEAP1 WILD-TYPE" 
     TCGA-73-4670      TCGA-73-4675      TCGA-73-4676      TCGA-73-4677 
  "KEAP1 MUTATED" "KEAP1 WILD-TYPE"   "KEAP1 MUTATED"   "KEAP1 MUTATED" 
     TCGA-91-6828      TCGA-91-6829      TCGA-91-6831      TCGA-91-6835 
"KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" 
     TCGA-91-6836 
"KEAP1 WILD-TYPE" 
     TCGA-05-4249      TCGA-05-4250      TCGA-05-4382      TCGA-05-4384 
"KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE"   "KEAP1 MUTATED" 
     TCGA-05-4390      TCGA-05-4396      TCGA-05-4397      TCGA-05-4398 
"KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" 
     TCGA-05-4402      TCGA-05-4405      TCGA-05-4415      TCGA-05-4417 
"KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" 
     TCGA-05-4418      TCGA-05-4420      TCGA-05-4424      TCGA-05-4426 
  "KEAP1 MUTATED" "KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" 
     TCGA-05-4427      TCGA-05-4430      TCGA-05-4432      TCGA-05-4433 
"KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" 
     TCGA-05-4434      TCGA-05-5420      TCGA-05-5423      TCGA-05-5425 
"KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" 
     TCGA-05-5429      TCGA-05-5715      TCGA-35-3615      TCGA-35-4122 
"KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE"   "KEAP1 MUTATED" "KEAP1 WILD-TYPE" 
     TCGA-35-4123      TCGA-35-5375      TCGA-38-4625      TCGA-38-4626 
"KEAP1 WILD-TYPE"   "KEAP1 MUTATED" "KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" 
     TCGA-38-4627      TCGA-38-4628      TCGA-38-4629      TCGA-38-4630 
"KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" 
     TCGA-38-4631      TCGA-38-4632      TCGA-38-6178      TCGA-44-2655 
  "KEAP1 MUTATED" "KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE"   "KEAP1 MUTATED" 
     TCGA-44-2656      TCGA-44-2657      TCGA-44-2659      TCGA-44-2661 
"KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" 
     TCGA-44-2662      TCGA-44-2665      TCGA-44-2666      TCGA-44-2668 
"KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" 
     TCGA-44-3396      TCGA-44-3398      TCGA-44-3918      TCGA-44-3919 
"KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" 
     TCGA-44-4112      TCGA-44-5643      TCGA-44-5645      TCGA-44-6144 
"KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" 
     TCGA-44-6145      TCGA-44-6146      TCGA-44-6147      TCGA-44-6148 
"KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" 
     TCGA-44-6774      TCGA-44-6775      TCGA-44-6776      TCGA-44-6777 
"KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE"   "KEAP1 MUTATED" "KEAP1 WILD-TYPE" 
     TCGA-44-6778      TCGA-44-6779      TCGA-49-4486      TCGA-49-4487 
  "KEAP1 MUTATED"   "KEAP1 MUTATED"   "KEAP1 MUTATED" "KEAP1 WILD-TYPE" 
     TCGA-49-4488      TCGA-49-4490      TCGA-49-4494      TCGA-49-4501 
  "KEAP1 MUTATED" "KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" 
     TCGA-49-4505      TCGA-49-4506      TCGA-49-4507      TCGA-49-4510 
"KEAP1 WILD-TYPE"   "KEAP1 MUTATED"   "KEAP1 MUTATED" "KEAP1 WILD-TYPE" 
     TCGA-49-4512      TCGA-49-4514      TCGA-49-6742      TCGA-49-6743 
"KEAP1 WILD-TYPE"   "KEAP1 MUTATED"   "KEAP1 MUTATED"   "KEAP1 MUTATED" 
     TCGA-49-6744      TCGA-49-6745      TCGA-50-5044      TCGA-50-5045 
"KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" 
     TCGA-50-5049      TCGA-50-5051      TCGA-50-5055      TCGA-50-5066 
"KEAP1 WILD-TYPE"   "KEAP1 MUTATED" "KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" 
     TCGA-50-5068      TCGA-50-5072      TCGA-50-5930      TCGA-50-5931 
  "KEAP1 MUTATED" "KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" 
     TCGA-50-5932      TCGA-50-5933      TCGA-50-5935      TCGA-50-5936 
"KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE"   "KEAP1 MUTATED" 
     TCGA-50-5939      TCGA-50-5941      TCGA-50-5942      TCGA-50-5944 
  "KEAP1 MUTATED" "KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" 
     TCGA-50-5946      TCGA-50-6590      TCGA-50-6591      TCGA-50-6592 
"KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" 
     TCGA-50-6593      TCGA-50-6594      TCGA-50-6595      TCGA-50-6597 
"KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" 
     TCGA-55-1592      TCGA-55-1594      TCGA-55-1595      TCGA-55-1596 
"KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" 
     TCGA-55-5899      TCGA-55-6543      TCGA-55-6642      TCGA-55-6712 
  "KEAP1 MUTATED" "KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" 
     TCGA-64-1676      TCGA-64-1677      TCGA-64-1678      TCGA-64-1680 
"KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" 
     TCGA-64-5774      TCGA-64-5775      TCGA-64-5778      TCGA-64-5779 
"KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" 
     TCGA-64-5781      TCGA-64-5815      TCGA-67-3770      TCGA-67-3771 
  "KEAP1 MUTATED" "KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE"   "KEAP1 MUTATED" 
     TCGA-67-3772      TCGA-67-3773      TCGA-67-3774      TCGA-67-6215 
"KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE"   "KEAP1 MUTATED" "KEAP1 WILD-TYPE" 
     TCGA-67-6216      TCGA-67-6217      TCGA-71-6725      TCGA-73-4658 
"KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" 
     TCGA-73-4659      TCGA-73-4662      TCGA-73-4666      TCGA-73-4668 
"KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE"   "KEAP1 MUTATED" "KEAP1 WILD-TYPE" 
     TCGA-73-4670      TCGA-73-4675      TCGA-73-4676      TCGA-73-4677 
  "KEAP1 MUTATED" "KEAP1 WILD-TYPE"   "KEAP1 MUTATED"   "KEAP1 MUTATED" 
     TCGA-91-6828      TCGA-91-6829      TCGA-91-6831      TCGA-91-6835 
"KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" 
     TCGA-91-6836 
"KEAP1 WILD-TYPE" 
[1] "hr=" "1.2"
D1V2, continuous
D1V3, binary
[1] "tbl2"
                 cls
clus              [,1] [,2]
  KEAP1 MUTATED     17   15
  KEAP1 WILD-TYPE   76   64
        clus
vv       KEAP1 MUTATED KEAP1 WILD-TYPE
  FEMALE            17              76
  MALE              15              64
D1V4, continuous
D1V5, multiclass
D1V6, multiclass
    clus
vv   KEAP1 MUTATED KEAP1 WILD-TYPE
  T1            11              30
  T2            18              90
  T3             2              12
  T4             1               7
D1V7, multiclass
       clus
vv      KEAP1 MUTATED KEAP1 WILD-TYPE
  N0               18              77
  N1                7              30
  N2+N3             7              28
D1V8, multiclass
    clus
vv   KEAP1 MUTATED KEAP1 WILD-TYPE
  M0            23             114
  M1             2               7
  MX             7              15
D1V9, multiclass
     clus
vv    KEAP1 MUTATED KEAP1 WILD-TYPE
  I              17              71
  II              5              28
  III             8              31
  IV              2               7
D1V10, binary
[1] "tbl2"
                 cls
clus              [,1] [,2]
  KEAP1 MUTATED      4   28
  KEAP1 WILD-TYPE   12  128
     clus
vv    KEAP1 MUTATED KEAP1 WILD-TYPE
  NO              4              12
  YES            28             128
D1V11, continuous
D1V12, continuous
D1V13, multiclass
                                             clus
vv                                            KEAP1 MUTATED KEAP1 WILD-TYPE
  CURRENT REFORMED SMOKER FOR < OR = 15 YEARS            13              49
  CURRENT REFORMED SMOKER FOR > 15 YEARS                 11              35
  CURRENT SMOKER                                          4              24
  LIFELONG NON-SMOKER                                     2              22
D1V14, continuous

Clustering(2) Variable = KRAS MUTATION ANALYSIS
D2V1, survival
                sevent
clus2             0  1
  KRAS MUTATED   28 13
  KRAS WILD-TYPE 71 37
  KRAS MUTATED KRAS WILD-TYPE 
            41            108 
  KRAS MUTATED KRAS WILD-TYPE 
            13             37 
$`KRAS MUTATED`
TCGA-05-4249 TCGA-05-4250 TCGA-05-4390 TCGA-05-4405 TCGA-05-4415 TCGA-05-4417 
       38.07         3.98        37.02        20.05         2.96        14.93 
TCGA-05-4418 TCGA-05-4427 TCGA-05-4430 TCGA-05-4433 TCGA-35-3615 TCGA-38-4626 
        8.98        26.01        25.02        24.00         0.46        85.32 
TCGA-44-2668 TCGA-44-6144 TCGA-44-6145 TCGA-44-6146 TCGA-44-6776 TCGA-44-6777 
        8.09         0.30         3.35         9.93        63.72        32.45 
TCGA-49-4505 TCGA-49-4510 TCGA-49-6744 TCGA-50-5051 TCGA-50-5932 TCGA-50-5933 
       14.07        29.46        12.99        14.96        35.87        77.88 
TCGA-50-5936 TCGA-50-5941 TCGA-55-1595 TCGA-55-6642 TCGA-64-1677 TCGA-64-5774 
        8.45         9.37        48.62        32.61        20.65        83.84 
TCGA-64-5775 TCGA-64-5778 TCGA-64-5815 TCGA-67-3773 TCGA-67-3774 TCGA-73-4659 
        0.10        30.44         7.33         2.04         0.59        23.38 
TCGA-73-4662 TCGA-73-4670 TCGA-73-4677 TCGA-91-6828 TCGA-91-6836 
       29.95         0.46         1.25         1.22         0.36 

$`KRAS WILD-TYPE`
TCGA-05-4382 TCGA-05-4384 TCGA-05-4396 TCGA-05-4397 TCGA-05-4398 TCGA-05-4402 
       19.92        14.01         9.96        24.03        47.05         8.02 
TCGA-05-4420 TCGA-05-4424 TCGA-05-4426 TCGA-05-4432 TCGA-05-4434 TCGA-05-5420 
       29.95        30.02        26.01        25.02        15.02         1.02 
TCGA-05-5423 TCGA-05-5425 TCGA-05-5429 TCGA-05-5715 TCGA-35-4122 TCGA-35-4123 
        4.96         2.96         0.99         2.04         7.36         5.95 
TCGA-35-5375 TCGA-38-4625 TCGA-38-4627 TCGA-38-4628 TCGA-38-4629 TCGA-38-4630 
        8.68        47.61        37.71        49.02        28.37        35.28 
TCGA-38-4631 TCGA-38-4632 TCGA-38-6178 TCGA-44-2655 TCGA-44-2656 TCGA-44-2657 
       11.64        44.61         5.19        18.87        19.10        13.15 
TCGA-44-2659 TCGA-44-2661 TCGA-44-2662 TCGA-44-2665 TCGA-44-2666 TCGA-44-3396 
       17.39         3.39        15.78        13.15         3.19        10.22 
TCGA-44-3398 TCGA-44-3918 TCGA-44-3919 TCGA-44-4112 TCGA-44-5643 TCGA-44-5645 
        8.32         6.44         6.21         4.60         3.48         6.84 
TCGA-44-6147 TCGA-44-6148 TCGA-44-6774 TCGA-44-6775 TCGA-44-6778 TCGA-44-6779 
        7.76         3.12         5.42         2.70        36.49        16.41 
TCGA-49-4486 TCGA-49-4487 TCGA-49-4488 TCGA-49-4490 TCGA-49-4494 TCGA-49-4501 
       76.21        28.11        28.57        12.66        35.54        46.72 
TCGA-49-4506 TCGA-49-4507 TCGA-49-4512 TCGA-49-4514 TCGA-49-6742 TCGA-49-6743 
       32.84         8.81        29.75        43.20        15.02        12.13 
TCGA-49-6745 TCGA-50-5044 TCGA-50-5045 TCGA-50-5049 TCGA-50-5055 TCGA-50-5066 
        4.93        20.48        71.47        48.82        25.81         9.76 
TCGA-50-5068 TCGA-50-5072 TCGA-50-5930 TCGA-50-5931 TCGA-50-5935 TCGA-50-5939 
       49.28         8.05         9.27         8.78        21.47        15.12 
TCGA-50-5942 TCGA-50-5944 TCGA-50-5946 TCGA-50-6590 TCGA-50-6591 TCGA-50-6592 
        4.44        12.26        11.47        42.31         3.88        25.51 
TCGA-50-6593 TCGA-50-6594 TCGA-50-6595 TCGA-50-6597 TCGA-55-1592 TCGA-55-1594 
       11.05        12.16         6.21        33.37        23.05        38.73 
TCGA-55-1596 TCGA-55-5899 TCGA-55-6543 TCGA-55-6712 TCGA-64-1676 TCGA-64-1678 
       45.17         2.86         0.07         0.79        56.81        39.09 
TCGA-64-1680 TCGA-64-5779 TCGA-64-5781 TCGA-67-3770 TCGA-67-3771 TCGA-67-3772 
       37.02        16.67        39.52         0.99         1.97         0.59 
TCGA-67-6215 TCGA-67-6216 TCGA-67-6217 TCGA-71-6725 TCGA-73-4658 TCGA-73-4666 
        0.89         0.69        13.87         2.01        52.57        20.28 
TCGA-73-4668 TCGA-73-4675 TCGA-73-4676 TCGA-91-6829 TCGA-91-6831 TCGA-91-6835 
       15.35         1.32         4.01        41.33         1.28         1.15 

  KRAS MUTATED KRAS WILD-TYPE 
          0.10           0.07 
  KRAS MUTATED KRAS WILD-TYPE 
         85.32          76.21 
  KRAS MUTATED KRAS WILD-TYPE 
         14.93          13.15 
[1] "0.1 - 85.3 (14.9)" "0.1 - 76.2 (13.2)"
    TCGA-05-4249     TCGA-05-4250     TCGA-05-4382     TCGA-05-4384 
  "KRAS MUTATED"   "KRAS MUTATED" "KRAS WILD-TYPE" "KRAS WILD-TYPE" 
    TCGA-05-4390     TCGA-05-4396     TCGA-05-4397     TCGA-05-4398 
  "KRAS MUTATED" "KRAS WILD-TYPE" "KRAS WILD-TYPE" "KRAS WILD-TYPE" 
    TCGA-05-4402     TCGA-05-4405     TCGA-05-4415     TCGA-05-4417 
"KRAS WILD-TYPE"   "KRAS MUTATED"   "KRAS MUTATED"   "KRAS MUTATED" 
    TCGA-05-4418     TCGA-05-4420     TCGA-05-4424     TCGA-05-4426 
  "KRAS MUTATED" "KRAS WILD-TYPE" "KRAS WILD-TYPE" "KRAS WILD-TYPE" 
    TCGA-05-4427     TCGA-05-4430     TCGA-05-4432     TCGA-05-4433 
  "KRAS MUTATED"   "KRAS MUTATED" "KRAS WILD-TYPE"   "KRAS MUTATED" 
    TCGA-05-4434     TCGA-05-5420     TCGA-05-5423     TCGA-05-5425 
"KRAS WILD-TYPE" "KRAS WILD-TYPE" "KRAS WILD-TYPE" "KRAS WILD-TYPE" 
    TCGA-05-5429     TCGA-05-5715     TCGA-35-3615     TCGA-35-4122 
"KRAS WILD-TYPE" "KRAS WILD-TYPE"   "KRAS MUTATED" "KRAS WILD-TYPE" 
    TCGA-35-4123     TCGA-35-5375     TCGA-38-4625     TCGA-38-4626 
"KRAS WILD-TYPE" "KRAS WILD-TYPE" "KRAS WILD-TYPE"   "KRAS MUTATED" 
    TCGA-38-4627     TCGA-38-4628     TCGA-38-4629     TCGA-38-4630 
"KRAS WILD-TYPE" "KRAS WILD-TYPE" "KRAS WILD-TYPE" "KRAS WILD-TYPE" 
    TCGA-38-4631     TCGA-38-4632     TCGA-38-6178     TCGA-44-2655 
"KRAS WILD-TYPE" "KRAS WILD-TYPE" "KRAS WILD-TYPE" "KRAS WILD-TYPE" 
    TCGA-44-2656     TCGA-44-2657     TCGA-44-2659     TCGA-44-2661 
"KRAS WILD-TYPE" "KRAS WILD-TYPE" "KRAS WILD-TYPE" "KRAS WILD-TYPE" 
    TCGA-44-2662     TCGA-44-2665     TCGA-44-2666     TCGA-44-2668 
"KRAS WILD-TYPE" "KRAS WILD-TYPE" "KRAS WILD-TYPE"   "KRAS MUTATED" 
    TCGA-44-3396     TCGA-44-3398     TCGA-44-3918     TCGA-44-3919 
"KRAS WILD-TYPE" "KRAS WILD-TYPE" "KRAS WILD-TYPE" "KRAS WILD-TYPE" 
    TCGA-44-4112     TCGA-44-5643     TCGA-44-5645     TCGA-44-6144 
"KRAS WILD-TYPE" "KRAS WILD-TYPE" "KRAS WILD-TYPE"   "KRAS MUTATED" 
    TCGA-44-6145     TCGA-44-6146     TCGA-44-6147     TCGA-44-6148 
  "KRAS MUTATED"   "KRAS MUTATED" "KRAS WILD-TYPE" "KRAS WILD-TYPE" 
    TCGA-44-6774     TCGA-44-6775     TCGA-44-6776     TCGA-44-6777 
"KRAS WILD-TYPE" "KRAS WILD-TYPE"   "KRAS MUTATED"   "KRAS MUTATED" 
    TCGA-44-6778     TCGA-44-6779     TCGA-49-4486     TCGA-49-4487 
"KRAS WILD-TYPE" "KRAS WILD-TYPE" "KRAS WILD-TYPE" "KRAS WILD-TYPE" 
    TCGA-49-4488     TCGA-49-4490     TCGA-49-4494     TCGA-49-4501 
"KRAS WILD-TYPE" "KRAS WILD-TYPE" "KRAS WILD-TYPE" "KRAS WILD-TYPE" 
    TCGA-49-4505     TCGA-49-4506     TCGA-49-4507     TCGA-49-4510 
  "KRAS MUTATED" "KRAS WILD-TYPE" "KRAS WILD-TYPE"   "KRAS MUTATED" 
    TCGA-49-4512     TCGA-49-4514     TCGA-49-6742     TCGA-49-6743 
"KRAS WILD-TYPE" "KRAS WILD-TYPE" "KRAS WILD-TYPE" "KRAS WILD-TYPE" 
    TCGA-49-6744     TCGA-49-6745     TCGA-50-5044     TCGA-50-5045 
  "KRAS MUTATED" "KRAS WILD-TYPE" "KRAS WILD-TYPE" "KRAS WILD-TYPE" 
    TCGA-50-5049     TCGA-50-5051     TCGA-50-5055     TCGA-50-5066 
"KRAS WILD-TYPE"   "KRAS MUTATED" "KRAS WILD-TYPE" "KRAS WILD-TYPE" 
    TCGA-50-5068     TCGA-50-5072     TCGA-50-5930     TCGA-50-5931 
"KRAS WILD-TYPE" "KRAS WILD-TYPE" "KRAS WILD-TYPE" "KRAS WILD-TYPE" 
    TCGA-50-5932     TCGA-50-5933     TCGA-50-5935     TCGA-50-5936 
  "KRAS MUTATED"   "KRAS MUTATED" "KRAS WILD-TYPE"   "KRAS MUTATED" 
    TCGA-50-5939     TCGA-50-5941     TCGA-50-5942     TCGA-50-5944 
"KRAS WILD-TYPE"   "KRAS MUTATED" "KRAS WILD-TYPE" "KRAS WILD-TYPE" 
    TCGA-50-5946     TCGA-50-6590     TCGA-50-6591     TCGA-50-6592 
"KRAS WILD-TYPE" "KRAS WILD-TYPE" "KRAS WILD-TYPE" "KRAS WILD-TYPE" 
    TCGA-50-6593     TCGA-50-6594     TCGA-50-6595     TCGA-50-6597 
"KRAS WILD-TYPE" "KRAS WILD-TYPE" "KRAS WILD-TYPE" "KRAS WILD-TYPE" 
    TCGA-55-1592     TCGA-55-1594     TCGA-55-1595     TCGA-55-1596 
"KRAS WILD-TYPE" "KRAS WILD-TYPE"   "KRAS MUTATED" "KRAS WILD-TYPE" 
    TCGA-55-5899     TCGA-55-6543     TCGA-55-6642     TCGA-55-6712 
"KRAS WILD-TYPE" "KRAS WILD-TYPE"   "KRAS MUTATED" "KRAS WILD-TYPE" 
    TCGA-64-1676     TCGA-64-1677     TCGA-64-1678     TCGA-64-1680 
"KRAS WILD-TYPE"   "KRAS MUTATED" "KRAS WILD-TYPE" "KRAS WILD-TYPE" 
    TCGA-64-5774     TCGA-64-5775     TCGA-64-5778     TCGA-64-5779 
  "KRAS MUTATED"   "KRAS MUTATED"   "KRAS MUTATED" "KRAS WILD-TYPE" 
    TCGA-64-5781     TCGA-64-5815     TCGA-67-3770     TCGA-67-3771 
"KRAS WILD-TYPE"   "KRAS MUTATED" "KRAS WILD-TYPE" "KRAS WILD-TYPE" 
    TCGA-67-3772     TCGA-67-3773     TCGA-67-3774     TCGA-67-6215 
"KRAS WILD-TYPE"   "KRAS MUTATED"   "KRAS MUTATED" "KRAS WILD-TYPE" 
    TCGA-67-6216     TCGA-67-6217     TCGA-71-6725     TCGA-73-4658 
"KRAS WILD-TYPE" "KRAS WILD-TYPE" "KRAS WILD-TYPE" "KRAS WILD-TYPE" 
    TCGA-73-4659     TCGA-73-4662     TCGA-73-4666     TCGA-73-4668 
  "KRAS MUTATED"   "KRAS MUTATED" "KRAS WILD-TYPE" "KRAS WILD-TYPE" 
    TCGA-73-4670     TCGA-73-4675     TCGA-73-4676     TCGA-73-4677 
  "KRAS MUTATED" "KRAS WILD-TYPE" "KRAS WILD-TYPE"   "KRAS MUTATED" 
    TCGA-91-6828     TCGA-91-6829     TCGA-91-6831     TCGA-91-6835 
  "KRAS MUTATED" "KRAS WILD-TYPE" "KRAS WILD-TYPE" "KRAS WILD-TYPE" 
    TCGA-91-6836 
  "KRAS MUTATED" 
    TCGA-05-4249     TCGA-05-4250     TCGA-05-4382     TCGA-05-4384 
  "KRAS MUTATED"   "KRAS MUTATED" "KRAS WILD-TYPE" "KRAS WILD-TYPE" 
    TCGA-05-4390     TCGA-05-4396     TCGA-05-4397     TCGA-05-4398 
  "KRAS MUTATED" "KRAS WILD-TYPE" "KRAS WILD-TYPE" "KRAS WILD-TYPE" 
    TCGA-05-4402     TCGA-05-4405     TCGA-05-4415     TCGA-05-4417 
"KRAS WILD-TYPE"   "KRAS MUTATED"   "KRAS MUTATED"   "KRAS MUTATED" 
    TCGA-05-4418     TCGA-05-4420     TCGA-05-4424     TCGA-05-4426 
  "KRAS MUTATED" "KRAS WILD-TYPE" "KRAS WILD-TYPE" "KRAS WILD-TYPE" 
    TCGA-05-4427     TCGA-05-4430     TCGA-05-4432     TCGA-05-4433 
  "KRAS MUTATED"   "KRAS MUTATED" "KRAS WILD-TYPE"   "KRAS MUTATED" 
    TCGA-05-4434     TCGA-05-5420     TCGA-05-5423     TCGA-05-5425 
"KRAS WILD-TYPE" "KRAS WILD-TYPE" "KRAS WILD-TYPE" "KRAS WILD-TYPE" 
    TCGA-05-5429     TCGA-05-5715     TCGA-35-3615     TCGA-35-4122 
"KRAS WILD-TYPE" "KRAS WILD-TYPE"   "KRAS MUTATED" "KRAS WILD-TYPE" 
    TCGA-35-4123     TCGA-35-5375     TCGA-38-4625     TCGA-38-4626 
"KRAS WILD-TYPE" "KRAS WILD-TYPE" "KRAS WILD-TYPE"   "KRAS MUTATED" 
    TCGA-38-4627     TCGA-38-4628     TCGA-38-4629     TCGA-38-4630 
"KRAS WILD-TYPE" "KRAS WILD-TYPE" "KRAS WILD-TYPE" "KRAS WILD-TYPE" 
    TCGA-38-4631     TCGA-38-4632     TCGA-38-6178     TCGA-44-2655 
"KRAS WILD-TYPE" "KRAS WILD-TYPE" "KRAS WILD-TYPE" "KRAS WILD-TYPE" 
    TCGA-44-2656     TCGA-44-2657     TCGA-44-2659     TCGA-44-2661 
"KRAS WILD-TYPE" "KRAS WILD-TYPE" "KRAS WILD-TYPE" "KRAS WILD-TYPE" 
    TCGA-44-2662     TCGA-44-2665     TCGA-44-2666     TCGA-44-2668 
"KRAS WILD-TYPE" "KRAS WILD-TYPE" "KRAS WILD-TYPE"   "KRAS MUTATED" 
    TCGA-44-3396     TCGA-44-3398     TCGA-44-3918     TCGA-44-3919 
"KRAS WILD-TYPE" "KRAS WILD-TYPE" "KRAS WILD-TYPE" "KRAS WILD-TYPE" 
    TCGA-44-4112     TCGA-44-5643     TCGA-44-5645     TCGA-44-6144 
"KRAS WILD-TYPE" "KRAS WILD-TYPE" "KRAS WILD-TYPE"   "KRAS MUTATED" 
    TCGA-44-6145     TCGA-44-6146     TCGA-44-6147     TCGA-44-6148 
  "KRAS MUTATED"   "KRAS MUTATED" "KRAS WILD-TYPE" "KRAS WILD-TYPE" 
    TCGA-44-6774     TCGA-44-6775     TCGA-44-6776     TCGA-44-6777 
"KRAS WILD-TYPE" "KRAS WILD-TYPE"   "KRAS MUTATED"   "KRAS MUTATED" 
    TCGA-44-6778     TCGA-44-6779     TCGA-49-4486     TCGA-49-4487 
"KRAS WILD-TYPE" "KRAS WILD-TYPE" "KRAS WILD-TYPE" "KRAS WILD-TYPE" 
    TCGA-49-4488     TCGA-49-4490     TCGA-49-4494     TCGA-49-4501 
"KRAS WILD-TYPE" "KRAS WILD-TYPE" "KRAS WILD-TYPE" "KRAS WILD-TYPE" 
    TCGA-49-4505     TCGA-49-4506     TCGA-49-4507     TCGA-49-4510 
  "KRAS MUTATED" "KRAS WILD-TYPE" "KRAS WILD-TYPE"   "KRAS MUTATED" 
    TCGA-49-4512     TCGA-49-4514     TCGA-49-6742     TCGA-49-6743 
"KRAS WILD-TYPE" "KRAS WILD-TYPE" "KRAS WILD-TYPE" "KRAS WILD-TYPE" 
    TCGA-49-6744     TCGA-49-6745     TCGA-50-5044     TCGA-50-5045 
  "KRAS MUTATED" "KRAS WILD-TYPE" "KRAS WILD-TYPE" "KRAS WILD-TYPE" 
    TCGA-50-5049     TCGA-50-5051     TCGA-50-5055     TCGA-50-5066 
"KRAS WILD-TYPE"   "KRAS MUTATED" "KRAS WILD-TYPE" "KRAS WILD-TYPE" 
    TCGA-50-5068     TCGA-50-5072     TCGA-50-5930     TCGA-50-5931 
"KRAS WILD-TYPE" "KRAS WILD-TYPE" "KRAS WILD-TYPE" "KRAS WILD-TYPE" 
    TCGA-50-5932     TCGA-50-5933     TCGA-50-5935     TCGA-50-5936 
  "KRAS MUTATED"   "KRAS MUTATED" "KRAS WILD-TYPE"   "KRAS MUTATED" 
    TCGA-50-5939     TCGA-50-5941     TCGA-50-5942     TCGA-50-5944 
"KRAS WILD-TYPE"   "KRAS MUTATED" "KRAS WILD-TYPE" "KRAS WILD-TYPE" 
    TCGA-50-5946     TCGA-50-6590     TCGA-50-6591     TCGA-50-6592 
"KRAS WILD-TYPE" "KRAS WILD-TYPE" "KRAS WILD-TYPE" "KRAS WILD-TYPE" 
    TCGA-50-6593     TCGA-50-6594     TCGA-50-6595     TCGA-50-6597 
"KRAS WILD-TYPE" "KRAS WILD-TYPE" "KRAS WILD-TYPE" "KRAS WILD-TYPE" 
    TCGA-55-1592     TCGA-55-1594     TCGA-55-1595     TCGA-55-1596 
"KRAS WILD-TYPE" "KRAS WILD-TYPE"   "KRAS MUTATED" "KRAS WILD-TYPE" 
    TCGA-55-5899     TCGA-55-6543     TCGA-55-6642     TCGA-55-6712 
"KRAS WILD-TYPE" "KRAS WILD-TYPE"   "KRAS MUTATED" "KRAS WILD-TYPE" 
    TCGA-64-1676     TCGA-64-1677     TCGA-64-1678     TCGA-64-1680 
"KRAS WILD-TYPE"   "KRAS MUTATED" "KRAS WILD-TYPE" "KRAS WILD-TYPE" 
    TCGA-64-5774     TCGA-64-5775     TCGA-64-5778     TCGA-64-5779 
  "KRAS MUTATED"   "KRAS MUTATED"   "KRAS MUTATED" "KRAS WILD-TYPE" 
    TCGA-64-5781     TCGA-64-5815     TCGA-67-3770     TCGA-67-3771 
"KRAS WILD-TYPE"   "KRAS MUTATED" "KRAS WILD-TYPE" "KRAS WILD-TYPE" 
    TCGA-67-3772     TCGA-67-3773     TCGA-67-3774     TCGA-67-6215 
"KRAS WILD-TYPE"   "KRAS MUTATED"   "KRAS MUTATED" "KRAS WILD-TYPE" 
    TCGA-67-6216     TCGA-67-6217     TCGA-71-6725     TCGA-73-4658 
"KRAS WILD-TYPE" "KRAS WILD-TYPE" "KRAS WILD-TYPE" "KRAS WILD-TYPE" 
    TCGA-73-4659     TCGA-73-4662     TCGA-73-4666     TCGA-73-4668 
  "KRAS MUTATED"   "KRAS MUTATED" "KRAS WILD-TYPE" "KRAS WILD-TYPE" 
    TCGA-73-4670     TCGA-73-4675     TCGA-73-4676     TCGA-73-4677 
  "KRAS MUTATED" "KRAS WILD-TYPE" "KRAS WILD-TYPE"   "KRAS MUTATED" 
    TCGA-91-6828     TCGA-91-6829     TCGA-91-6831     TCGA-91-6835 
  "KRAS MUTATED" "KRAS WILD-TYPE" "KRAS WILD-TYPE" "KRAS WILD-TYPE" 
    TCGA-91-6836 
  "KRAS MUTATED" 
    TCGA-05-4249     TCGA-05-4250     TCGA-05-4382     TCGA-05-4384 
  "KRAS MUTATED"   "KRAS MUTATED" "KRAS WILD-TYPE" "KRAS WILD-TYPE" 
    TCGA-05-4390     TCGA-05-4396     TCGA-05-4397     TCGA-05-4398 
  "KRAS MUTATED" "KRAS WILD-TYPE" "KRAS WILD-TYPE" "KRAS WILD-TYPE" 
    TCGA-05-4402     TCGA-05-4405     TCGA-05-4415     TCGA-05-4417 
"KRAS WILD-TYPE"   "KRAS MUTATED"   "KRAS MUTATED"   "KRAS MUTATED" 
    TCGA-05-4418     TCGA-05-4420     TCGA-05-4424     TCGA-05-4426 
  "KRAS MUTATED" "KRAS WILD-TYPE" "KRAS WILD-TYPE" "KRAS WILD-TYPE" 
    TCGA-05-4427     TCGA-05-4430     TCGA-05-4432     TCGA-05-4433 
  "KRAS MUTATED"   "KRAS MUTATED" "KRAS WILD-TYPE"   "KRAS MUTATED" 
    TCGA-05-4434     TCGA-05-5420     TCGA-05-5423     TCGA-05-5425 
"KRAS WILD-TYPE" "KRAS WILD-TYPE" "KRAS WILD-TYPE" "KRAS WILD-TYPE" 
    TCGA-05-5429     TCGA-05-5715     TCGA-35-3615     TCGA-35-4122 
"KRAS WILD-TYPE" "KRAS WILD-TYPE"   "KRAS MUTATED" "KRAS WILD-TYPE" 
    TCGA-35-4123     TCGA-35-5375     TCGA-38-4625     TCGA-38-4626 
"KRAS WILD-TYPE" "KRAS WILD-TYPE" "KRAS WILD-TYPE"   "KRAS MUTATED" 
    TCGA-38-4627     TCGA-38-4628     TCGA-38-4629     TCGA-38-4630 
"KRAS WILD-TYPE" "KRAS WILD-TYPE" "KRAS WILD-TYPE" "KRAS WILD-TYPE" 
    TCGA-38-4631     TCGA-38-4632     TCGA-38-6178     TCGA-44-2655 
"KRAS WILD-TYPE" "KRAS WILD-TYPE" "KRAS WILD-TYPE" "KRAS WILD-TYPE" 
    TCGA-44-2656     TCGA-44-2657     TCGA-44-2659     TCGA-44-2661 
"KRAS WILD-TYPE" "KRAS WILD-TYPE" "KRAS WILD-TYPE" "KRAS WILD-TYPE" 
    TCGA-44-2662     TCGA-44-2665     TCGA-44-2666     TCGA-44-2668 
"KRAS WILD-TYPE" "KRAS WILD-TYPE" "KRAS WILD-TYPE"   "KRAS MUTATED" 
    TCGA-44-3396     TCGA-44-3398     TCGA-44-3918     TCGA-44-3919 
"KRAS WILD-TYPE" "KRAS WILD-TYPE" "KRAS WILD-TYPE" "KRAS WILD-TYPE" 
    TCGA-44-4112     TCGA-44-5643     TCGA-44-5645     TCGA-44-6144 
"KRAS WILD-TYPE" "KRAS WILD-TYPE" "KRAS WILD-TYPE"   "KRAS MUTATED" 
    TCGA-44-6145     TCGA-44-6146     TCGA-44-6147     TCGA-44-6148 
  "KRAS MUTATED"   "KRAS MUTATED" "KRAS WILD-TYPE" "KRAS WILD-TYPE" 
    TCGA-44-6774     TCGA-44-6775     TCGA-44-6776     TCGA-44-6777 
"KRAS WILD-TYPE" "KRAS WILD-TYPE"   "KRAS MUTATED"   "KRAS MUTATED" 
    TCGA-44-6778     TCGA-44-6779     TCGA-49-4486     TCGA-49-4487 
"KRAS WILD-TYPE" "KRAS WILD-TYPE" "KRAS WILD-TYPE" "KRAS WILD-TYPE" 
    TCGA-49-4488     TCGA-49-4490     TCGA-49-4494     TCGA-49-4501 
"KRAS WILD-TYPE" "KRAS WILD-TYPE" "KRAS WILD-TYPE" "KRAS WILD-TYPE" 
    TCGA-49-4505     TCGA-49-4506     TCGA-49-4507     TCGA-49-4510 
  "KRAS MUTATED" "KRAS WILD-TYPE" "KRAS WILD-TYPE"   "KRAS MUTATED" 
    TCGA-49-4512     TCGA-49-4514     TCGA-49-6742     TCGA-49-6743 
"KRAS WILD-TYPE" "KRAS WILD-TYPE" "KRAS WILD-TYPE" "KRAS WILD-TYPE" 
    TCGA-49-6744     TCGA-49-6745     TCGA-50-5044     TCGA-50-5045 
  "KRAS MUTATED" "KRAS WILD-TYPE" "KRAS WILD-TYPE" "KRAS WILD-TYPE" 
    TCGA-50-5049     TCGA-50-5051     TCGA-50-5055     TCGA-50-5066 
"KRAS WILD-TYPE"   "KRAS MUTATED" "KRAS WILD-TYPE" "KRAS WILD-TYPE" 
    TCGA-50-5068     TCGA-50-5072     TCGA-50-5930     TCGA-50-5931 
"KRAS WILD-TYPE" "KRAS WILD-TYPE" "KRAS WILD-TYPE" "KRAS WILD-TYPE" 
    TCGA-50-5932     TCGA-50-5933     TCGA-50-5935     TCGA-50-5936 
  "KRAS MUTATED"   "KRAS MUTATED" "KRAS WILD-TYPE"   "KRAS MUTATED" 
    TCGA-50-5939     TCGA-50-5941     TCGA-50-5942     TCGA-50-5944 
"KRAS WILD-TYPE"   "KRAS MUTATED" "KRAS WILD-TYPE" "KRAS WILD-TYPE" 
    TCGA-50-5946     TCGA-50-6590     TCGA-50-6591     TCGA-50-6592 
"KRAS WILD-TYPE" "KRAS WILD-TYPE" "KRAS WILD-TYPE" "KRAS WILD-TYPE" 
    TCGA-50-6593     TCGA-50-6594     TCGA-50-6595     TCGA-50-6597 
"KRAS WILD-TYPE" "KRAS WILD-TYPE" "KRAS WILD-TYPE" "KRAS WILD-TYPE" 
    TCGA-55-1592     TCGA-55-1594     TCGA-55-1595     TCGA-55-1596 
"KRAS WILD-TYPE" "KRAS WILD-TYPE"   "KRAS MUTATED" "KRAS WILD-TYPE" 
    TCGA-55-5899     TCGA-55-6543     TCGA-55-6642     TCGA-55-6712 
"KRAS WILD-TYPE" "KRAS WILD-TYPE"   "KRAS MUTATED" "KRAS WILD-TYPE" 
    TCGA-64-1676     TCGA-64-1677     TCGA-64-1678     TCGA-64-1680 
"KRAS WILD-TYPE"   "KRAS MUTATED" "KRAS WILD-TYPE" "KRAS WILD-TYPE" 
    TCGA-64-5774     TCGA-64-5775     TCGA-64-5778     TCGA-64-5779 
  "KRAS MUTATED"   "KRAS MUTATED"   "KRAS MUTATED" "KRAS WILD-TYPE" 
    TCGA-64-5781     TCGA-64-5815     TCGA-67-3770     TCGA-67-3771 
"KRAS WILD-TYPE"   "KRAS MUTATED" "KRAS WILD-TYPE" "KRAS WILD-TYPE" 
    TCGA-67-3772     TCGA-67-3773     TCGA-67-3774     TCGA-67-6215 
"KRAS WILD-TYPE"   "KRAS MUTATED"   "KRAS MUTATED" "KRAS WILD-TYPE" 
    TCGA-67-6216     TCGA-67-6217     TCGA-71-6725     TCGA-73-4658 
"KRAS WILD-TYPE" "KRAS WILD-TYPE" "KRAS WILD-TYPE" "KRAS WILD-TYPE" 
    TCGA-73-4659     TCGA-73-4662     TCGA-73-4666     TCGA-73-4668 
  "KRAS MUTATED"   "KRAS MUTATED" "KRAS WILD-TYPE" "KRAS WILD-TYPE" 
    TCGA-73-4670     TCGA-73-4675     TCGA-73-4676     TCGA-73-4677 
  "KRAS MUTATED" "KRAS WILD-TYPE" "KRAS WILD-TYPE"   "KRAS MUTATED" 
    TCGA-91-6828     TCGA-91-6829     TCGA-91-6831     TCGA-91-6835 
  "KRAS MUTATED" "KRAS WILD-TYPE" "KRAS WILD-TYPE" "KRAS WILD-TYPE" 
    TCGA-91-6836 
  "KRAS MUTATED" 
[1] "hr=" "1.4"
D2V2, continuous
D2V3, binary
[1] "tbl2"
                cls
clus             [,1] [,2]
  KRAS MUTATED     23   24
  KRAS WILD-TYPE   70   55
        clus
vv       KRAS MUTATED KRAS WILD-TYPE
  FEMALE           23             70
  MALE             24             55
D2V4, continuous
D2V5, multiclass
D2V6, multiclass
    clus
vv   KRAS MUTATED KRAS WILD-TYPE
  T1            6             35
  T2           32             76
  T3            5              9
  T4            4              4
D2V7, multiclass
       clus
vv      KRAS MUTATED KRAS WILD-TYPE
  N0              28             67
  N1               7             30
  N2+N3           11             24
D2V8, multiclass
    clus
vv   KRAS MUTATED KRAS WILD-TYPE
  M0           39             98
  M1            2              7
  MX            6             16
D2V9, multiclass
     clus
vv    KRAS MUTATED KRAS WILD-TYPE
  I             25             63
  II             8             25
  III           12             27
  IV             2              7
D2V10, binary
[1] "tbl2"
                cls
clus             [,1] [,2]
  KRAS MUTATED      4   43
  KRAS WILD-TYPE   12  113
     clus
vv    KRAS MUTATED KRAS WILD-TYPE
  NO             4             12
  YES           43            113
D2V11, continuous
D2V12, continuous
D2V13, multiclass
                                             clus
vv                                            KRAS MUTATED KRAS WILD-TYPE
  CURRENT REFORMED SMOKER FOR < OR = 15 YEARS           21             41
  CURRENT REFORMED SMOKER FOR > 15 YEARS                12             34
  CURRENT SMOKER                                         9             19
  LIFELONG NON-SMOKER                                    2             22
D2V14, continuous

Clustering(3) Variable = TP53 MUTATION ANALYSIS
D3V1, survival
                sevent
clus2             0  1
  TP53 MUTATED   49 27
  TP53 WILD-TYPE 50 23
  TP53 MUTATED TP53 WILD-TYPE 
            76             73 
  TP53 MUTATED TP53 WILD-TYPE 
            27             23 
$`TP53 MUTATED`
TCGA-05-4382 TCGA-05-4384 TCGA-05-4396 TCGA-05-4397 TCGA-05-4398 TCGA-05-4402 
       19.92        14.01         9.96        24.03        47.05         8.02 
TCGA-05-4405 TCGA-05-4420 TCGA-05-4424 TCGA-05-4426 TCGA-05-4427 TCGA-05-4430 
       20.05        29.95        30.02        26.01        26.01        25.02 
TCGA-05-4432 TCGA-05-4433 TCGA-05-5423 TCGA-35-4122 TCGA-35-4123 TCGA-35-5375 
       25.02        24.00         4.96         7.36         5.95         8.68 
TCGA-38-4625 TCGA-38-4629 TCGA-38-4630 TCGA-38-4632 TCGA-38-6178 TCGA-44-2659 
       47.61        28.37        35.28        44.61         5.19        17.39 
TCGA-44-2662 TCGA-44-2666 TCGA-44-2668 TCGA-44-3396 TCGA-44-3918 TCGA-44-5643 
       15.78         3.19         8.09        10.22         6.44         3.48 
TCGA-44-5645 TCGA-44-6144 TCGA-44-6145 TCGA-44-6147 TCGA-44-6774 TCGA-44-6775 
        6.84         0.30         3.35         7.76         5.42         2.70 
TCGA-44-6777 TCGA-44-6778 TCGA-44-6779 TCGA-49-4487 TCGA-49-4490 TCGA-49-4505 
       32.45        36.49        16.41        28.11        12.66        14.07 
TCGA-49-4514 TCGA-50-5045 TCGA-50-5049 TCGA-50-5066 TCGA-50-5068 TCGA-50-5931 
       43.20        71.47        48.82         9.76        49.28         8.78 
TCGA-50-5933 TCGA-50-5939 TCGA-50-5941 TCGA-50-5944 TCGA-50-5946 TCGA-50-6590 
       77.88        15.12         9.37        12.26        11.47        42.31 
TCGA-50-6591 TCGA-50-6592 TCGA-50-6593 TCGA-50-6594 TCGA-50-6595 TCGA-55-1592 
        3.88        25.51        11.05        12.16         6.21        23.05 
TCGA-55-1594 TCGA-55-1596 TCGA-55-5899 TCGA-55-6712 TCGA-64-1677 TCGA-64-1678 
       38.73        45.17         2.86         0.79        20.65        39.09 
TCGA-64-5775 TCGA-64-5778 TCGA-67-3770 TCGA-67-3771 TCGA-73-4666 TCGA-73-4670 
        0.10        30.44         0.99         1.97        20.28         0.46 
TCGA-73-4676 TCGA-91-6829 TCGA-91-6831 TCGA-91-6836 
        4.01        41.33         1.28         0.36 

$`TP53 WILD-TYPE`
TCGA-05-4249 TCGA-05-4250 TCGA-05-4390 TCGA-05-4415 TCGA-05-4417 TCGA-05-4418 
       38.07         3.98        37.02         2.96        14.93         8.98 
TCGA-05-4434 TCGA-05-5420 TCGA-05-5425 TCGA-05-5429 TCGA-05-5715 TCGA-35-3615 
       15.02         1.02         2.96         0.99         2.04         0.46 
TCGA-38-4626 TCGA-38-4627 TCGA-38-4628 TCGA-38-4631 TCGA-44-2655 TCGA-44-2656 
       85.32        37.71        49.02        11.64        18.87        19.10 
TCGA-44-2657 TCGA-44-2661 TCGA-44-2665 TCGA-44-3398 TCGA-44-3919 TCGA-44-4112 
       13.15         3.39        13.15         8.32         6.21         4.60 
TCGA-44-6146 TCGA-44-6148 TCGA-44-6776 TCGA-49-4486 TCGA-49-4488 TCGA-49-4494 
        9.93         3.12        63.72        76.21        28.57        35.54 
TCGA-49-4501 TCGA-49-4506 TCGA-49-4507 TCGA-49-4510 TCGA-49-4512 TCGA-49-6742 
       46.72        32.84         8.81        29.46        29.75        15.02 
TCGA-49-6743 TCGA-49-6744 TCGA-49-6745 TCGA-50-5044 TCGA-50-5051 TCGA-50-5055 
       12.13        12.99         4.93        20.48        14.96        25.81 
TCGA-50-5072 TCGA-50-5930 TCGA-50-5932 TCGA-50-5935 TCGA-50-5936 TCGA-50-5942 
        8.05         9.27        35.87        21.47         8.45         4.44 
TCGA-50-6597 TCGA-55-1595 TCGA-55-6543 TCGA-55-6642 TCGA-64-1676 TCGA-64-1680 
       33.37        48.62         0.07        32.61        56.81        37.02 
TCGA-64-5774 TCGA-64-5779 TCGA-64-5781 TCGA-64-5815 TCGA-67-3772 TCGA-67-3773 
       83.84        16.67        39.52         7.33         0.59         2.04 
TCGA-67-3774 TCGA-67-6215 TCGA-67-6216 TCGA-67-6217 TCGA-71-6725 TCGA-73-4658 
        0.59         0.89         0.69        13.87         2.01        52.57 
TCGA-73-4659 TCGA-73-4662 TCGA-73-4668 TCGA-73-4675 TCGA-73-4677 TCGA-91-6828 
       23.38        29.95        15.35         1.32         1.25         1.22 
TCGA-91-6835 
        1.15 

  TP53 MUTATED TP53 WILD-TYPE 
          0.10           0.07 
  TP53 MUTATED TP53 WILD-TYPE 
         77.88          85.32 
  TP53 MUTATED TP53 WILD-TYPE 
         14.04          13.15 
[1] "0.1 - 77.9 (14.0)" "0.1 - 85.3 (13.2)"
    TCGA-05-4249     TCGA-05-4250     TCGA-05-4382     TCGA-05-4384 
"TP53 WILD-TYPE" "TP53 WILD-TYPE"   "TP53 MUTATED"   "TP53 MUTATED" 
    TCGA-05-4390     TCGA-05-4396     TCGA-05-4397     TCGA-05-4398 
"TP53 WILD-TYPE"   "TP53 MUTATED"   "TP53 MUTATED"   "TP53 MUTATED" 
    TCGA-05-4402     TCGA-05-4405     TCGA-05-4415     TCGA-05-4417 
  "TP53 MUTATED"   "TP53 MUTATED" "TP53 WILD-TYPE" "TP53 WILD-TYPE" 
    TCGA-05-4418     TCGA-05-4420     TCGA-05-4424     TCGA-05-4426 
"TP53 WILD-TYPE"   "TP53 MUTATED"   "TP53 MUTATED"   "TP53 MUTATED" 
    TCGA-05-4427     TCGA-05-4430     TCGA-05-4432     TCGA-05-4433 
  "TP53 MUTATED"   "TP53 MUTATED"   "TP53 MUTATED"   "TP53 MUTATED" 
    TCGA-05-4434     TCGA-05-5420     TCGA-05-5423     TCGA-05-5425 
"TP53 WILD-TYPE" "TP53 WILD-TYPE"   "TP53 MUTATED" "TP53 WILD-TYPE" 
    TCGA-05-5429     TCGA-05-5715     TCGA-35-3615     TCGA-35-4122 
"TP53 WILD-TYPE" "TP53 WILD-TYPE" "TP53 WILD-TYPE"   "TP53 MUTATED" 
    TCGA-35-4123     TCGA-35-5375     TCGA-38-4625     TCGA-38-4626 
  "TP53 MUTATED"   "TP53 MUTATED"   "TP53 MUTATED" "TP53 WILD-TYPE" 
    TCGA-38-4627     TCGA-38-4628     TCGA-38-4629     TCGA-38-4630 
"TP53 WILD-TYPE" "TP53 WILD-TYPE"   "TP53 MUTATED"   "TP53 MUTATED" 
    TCGA-38-4631     TCGA-38-4632     TCGA-38-6178     TCGA-44-2655 
"TP53 WILD-TYPE"   "TP53 MUTATED"   "TP53 MUTATED" "TP53 WILD-TYPE" 
    TCGA-44-2656     TCGA-44-2657     TCGA-44-2659     TCGA-44-2661 
"TP53 WILD-TYPE" "TP53 WILD-TYPE"   "TP53 MUTATED" "TP53 WILD-TYPE" 
    TCGA-44-2662     TCGA-44-2665     TCGA-44-2666     TCGA-44-2668 
  "TP53 MUTATED" "TP53 WILD-TYPE"   "TP53 MUTATED"   "TP53 MUTATED" 
    TCGA-44-3396     TCGA-44-3398     TCGA-44-3918     TCGA-44-3919 
  "TP53 MUTATED" "TP53 WILD-TYPE"   "TP53 MUTATED" "TP53 WILD-TYPE" 
    TCGA-44-4112     TCGA-44-5643     TCGA-44-5645     TCGA-44-6144 
"TP53 WILD-TYPE"   "TP53 MUTATED"   "TP53 MUTATED"   "TP53 MUTATED" 
    TCGA-44-6145     TCGA-44-6146     TCGA-44-6147     TCGA-44-6148 
  "TP53 MUTATED" "TP53 WILD-TYPE"   "TP53 MUTATED" "TP53 WILD-TYPE" 
    TCGA-44-6774     TCGA-44-6775     TCGA-44-6776     TCGA-44-6777 
  "TP53 MUTATED"   "TP53 MUTATED" "TP53 WILD-TYPE"   "TP53 MUTATED" 
    TCGA-44-6778     TCGA-44-6779     TCGA-49-4486     TCGA-49-4487 
  "TP53 MUTATED"   "TP53 MUTATED" "TP53 WILD-TYPE"   "TP53 MUTATED" 
    TCGA-49-4488     TCGA-49-4490     TCGA-49-4494     TCGA-49-4501 
"TP53 WILD-TYPE"   "TP53 MUTATED" "TP53 WILD-TYPE" "TP53 WILD-TYPE" 
    TCGA-49-4505     TCGA-49-4506     TCGA-49-4507     TCGA-49-4510 
  "TP53 MUTATED" "TP53 WILD-TYPE" "TP53 WILD-TYPE" "TP53 WILD-TYPE" 
    TCGA-49-4512     TCGA-49-4514     TCGA-49-6742     TCGA-49-6743 
"TP53 WILD-TYPE"   "TP53 MUTATED" "TP53 WILD-TYPE" "TP53 WILD-TYPE" 
    TCGA-49-6744     TCGA-49-6745     TCGA-50-5044     TCGA-50-5045 
"TP53 WILD-TYPE" "TP53 WILD-TYPE" "TP53 WILD-TYPE"   "TP53 MUTATED" 
    TCGA-50-5049     TCGA-50-5051     TCGA-50-5055     TCGA-50-5066 
  "TP53 MUTATED" "TP53 WILD-TYPE" "TP53 WILD-TYPE"   "TP53 MUTATED" 
    TCGA-50-5068     TCGA-50-5072     TCGA-50-5930     TCGA-50-5931 
  "TP53 MUTATED" "TP53 WILD-TYPE" "TP53 WILD-TYPE"   "TP53 MUTATED" 
    TCGA-50-5932     TCGA-50-5933     TCGA-50-5935     TCGA-50-5936 
"TP53 WILD-TYPE"   "TP53 MUTATED" "TP53 WILD-TYPE" "TP53 WILD-TYPE" 
    TCGA-50-5939     TCGA-50-5941     TCGA-50-5942     TCGA-50-5944 
  "TP53 MUTATED"   "TP53 MUTATED" "TP53 WILD-TYPE"   "TP53 MUTATED" 
    TCGA-50-5946     TCGA-50-6590     TCGA-50-6591     TCGA-50-6592 
  "TP53 MUTATED"   "TP53 MUTATED"   "TP53 MUTATED"   "TP53 MUTATED" 
    TCGA-50-6593     TCGA-50-6594     TCGA-50-6595     TCGA-50-6597 
  "TP53 MUTATED"   "TP53 MUTATED"   "TP53 MUTATED" "TP53 WILD-TYPE" 
    TCGA-55-1592     TCGA-55-1594     TCGA-55-1595     TCGA-55-1596 
  "TP53 MUTATED"   "TP53 MUTATED" "TP53 WILD-TYPE"   "TP53 MUTATED" 
    TCGA-55-5899     TCGA-55-6543     TCGA-55-6642     TCGA-55-6712 
  "TP53 MUTATED" "TP53 WILD-TYPE" "TP53 WILD-TYPE"   "TP53 MUTATED" 
    TCGA-64-1676     TCGA-64-1677     TCGA-64-1678     TCGA-64-1680 
"TP53 WILD-TYPE"   "TP53 MUTATED"   "TP53 MUTATED" "TP53 WILD-TYPE" 
    TCGA-64-5774     TCGA-64-5775     TCGA-64-5778     TCGA-64-5779 
"TP53 WILD-TYPE"   "TP53 MUTATED"   "TP53 MUTATED" "TP53 WILD-TYPE" 
    TCGA-64-5781     TCGA-64-5815     TCGA-67-3770     TCGA-67-3771 
"TP53 WILD-TYPE" "TP53 WILD-TYPE"   "TP53 MUTATED"   "TP53 MUTATED" 
    TCGA-67-3772     TCGA-67-3773     TCGA-67-3774     TCGA-67-6215 
"TP53 WILD-TYPE" "TP53 WILD-TYPE" "TP53 WILD-TYPE" "TP53 WILD-TYPE" 
    TCGA-67-6216     TCGA-67-6217     TCGA-71-6725     TCGA-73-4658 
"TP53 WILD-TYPE" "TP53 WILD-TYPE" "TP53 WILD-TYPE" "TP53 WILD-TYPE" 
    TCGA-73-4659     TCGA-73-4662     TCGA-73-4666     TCGA-73-4668 
"TP53 WILD-TYPE" "TP53 WILD-TYPE"   "TP53 MUTATED" "TP53 WILD-TYPE" 
    TCGA-73-4670     TCGA-73-4675     TCGA-73-4676     TCGA-73-4677 
  "TP53 MUTATED" "TP53 WILD-TYPE"   "TP53 MUTATED" "TP53 WILD-TYPE" 
    TCGA-91-6828     TCGA-91-6829     TCGA-91-6831     TCGA-91-6835 
"TP53 WILD-TYPE"   "TP53 MUTATED"   "TP53 MUTATED" "TP53 WILD-TYPE" 
    TCGA-91-6836 
  "TP53 MUTATED" 
    TCGA-05-4249     TCGA-05-4250     TCGA-05-4382     TCGA-05-4384 
"TP53 WILD-TYPE" "TP53 WILD-TYPE"   "TP53 MUTATED"   "TP53 MUTATED" 
    TCGA-05-4390     TCGA-05-4396     TCGA-05-4397     TCGA-05-4398 
"TP53 WILD-TYPE"   "TP53 MUTATED"   "TP53 MUTATED"   "TP53 MUTATED" 
    TCGA-05-4402     TCGA-05-4405     TCGA-05-4415     TCGA-05-4417 
  "TP53 MUTATED"   "TP53 MUTATED" "TP53 WILD-TYPE" "TP53 WILD-TYPE" 
    TCGA-05-4418     TCGA-05-4420     TCGA-05-4424     TCGA-05-4426 
"TP53 WILD-TYPE"   "TP53 MUTATED"   "TP53 MUTATED"   "TP53 MUTATED" 
    TCGA-05-4427     TCGA-05-4430     TCGA-05-4432     TCGA-05-4433 
  "TP53 MUTATED"   "TP53 MUTATED"   "TP53 MUTATED"   "TP53 MUTATED" 
    TCGA-05-4434     TCGA-05-5420     TCGA-05-5423     TCGA-05-5425 
"TP53 WILD-TYPE" "TP53 WILD-TYPE"   "TP53 MUTATED" "TP53 WILD-TYPE" 
    TCGA-05-5429     TCGA-05-5715     TCGA-35-3615     TCGA-35-4122 
"TP53 WILD-TYPE" "TP53 WILD-TYPE" "TP53 WILD-TYPE"   "TP53 MUTATED" 
    TCGA-35-4123     TCGA-35-5375     TCGA-38-4625     TCGA-38-4626 
  "TP53 MUTATED"   "TP53 MUTATED"   "TP53 MUTATED" "TP53 WILD-TYPE" 
    TCGA-38-4627     TCGA-38-4628     TCGA-38-4629     TCGA-38-4630 
"TP53 WILD-TYPE" "TP53 WILD-TYPE"   "TP53 MUTATED"   "TP53 MUTATED" 
    TCGA-38-4631     TCGA-38-4632     TCGA-38-6178     TCGA-44-2655 
"TP53 WILD-TYPE"   "TP53 MUTATED"   "TP53 MUTATED" "TP53 WILD-TYPE" 
    TCGA-44-2656     TCGA-44-2657     TCGA-44-2659     TCGA-44-2661 
"TP53 WILD-TYPE" "TP53 WILD-TYPE"   "TP53 MUTATED" "TP53 WILD-TYPE" 
    TCGA-44-2662     TCGA-44-2665     TCGA-44-2666     TCGA-44-2668 
  "TP53 MUTATED" "TP53 WILD-TYPE"   "TP53 MUTATED"   "TP53 MUTATED" 
    TCGA-44-3396     TCGA-44-3398     TCGA-44-3918     TCGA-44-3919 
  "TP53 MUTATED" "TP53 WILD-TYPE"   "TP53 MUTATED" "TP53 WILD-TYPE" 
    TCGA-44-4112     TCGA-44-5643     TCGA-44-5645     TCGA-44-6144 
"TP53 WILD-TYPE"   "TP53 MUTATED"   "TP53 MUTATED"   "TP53 MUTATED" 
    TCGA-44-6145     TCGA-44-6146     TCGA-44-6147     TCGA-44-6148 
  "TP53 MUTATED" "TP53 WILD-TYPE"   "TP53 MUTATED" "TP53 WILD-TYPE" 
    TCGA-44-6774     TCGA-44-6775     TCGA-44-6776     TCGA-44-6777 
  "TP53 MUTATED"   "TP53 MUTATED" "TP53 WILD-TYPE"   "TP53 MUTATED" 
    TCGA-44-6778     TCGA-44-6779     TCGA-49-4486     TCGA-49-4487 
  "TP53 MUTATED"   "TP53 MUTATED" "TP53 WILD-TYPE"   "TP53 MUTATED" 
    TCGA-49-4488     TCGA-49-4490     TCGA-49-4494     TCGA-49-4501 
"TP53 WILD-TYPE"   "TP53 MUTATED" "TP53 WILD-TYPE" "TP53 WILD-TYPE" 
    TCGA-49-4505     TCGA-49-4506     TCGA-49-4507     TCGA-49-4510 
  "TP53 MUTATED" "TP53 WILD-TYPE" "TP53 WILD-TYPE" "TP53 WILD-TYPE" 
    TCGA-49-4512     TCGA-49-4514     TCGA-49-6742     TCGA-49-6743 
"TP53 WILD-TYPE"   "TP53 MUTATED" "TP53 WILD-TYPE" "TP53 WILD-TYPE" 
    TCGA-49-6744     TCGA-49-6745     TCGA-50-5044     TCGA-50-5045 
"TP53 WILD-TYPE" "TP53 WILD-TYPE" "TP53 WILD-TYPE"   "TP53 MUTATED" 
    TCGA-50-5049     TCGA-50-5051     TCGA-50-5055     TCGA-50-5066 
  "TP53 MUTATED" "TP53 WILD-TYPE" "TP53 WILD-TYPE"   "TP53 MUTATED" 
    TCGA-50-5068     TCGA-50-5072     TCGA-50-5930     TCGA-50-5931 
  "TP53 MUTATED" "TP53 WILD-TYPE" "TP53 WILD-TYPE"   "TP53 MUTATED" 
    TCGA-50-5932     TCGA-50-5933     TCGA-50-5935     TCGA-50-5936 
"TP53 WILD-TYPE"   "TP53 MUTATED" "TP53 WILD-TYPE" "TP53 WILD-TYPE" 
    TCGA-50-5939     TCGA-50-5941     TCGA-50-5942     TCGA-50-5944 
  "TP53 MUTATED"   "TP53 MUTATED" "TP53 WILD-TYPE"   "TP53 MUTATED" 
    TCGA-50-5946     TCGA-50-6590     TCGA-50-6591     TCGA-50-6592 
  "TP53 MUTATED"   "TP53 MUTATED"   "TP53 MUTATED"   "TP53 MUTATED" 
    TCGA-50-6593     TCGA-50-6594     TCGA-50-6595     TCGA-50-6597 
  "TP53 MUTATED"   "TP53 MUTATED"   "TP53 MUTATED" "TP53 WILD-TYPE" 
    TCGA-55-1592     TCGA-55-1594     TCGA-55-1595     TCGA-55-1596 
  "TP53 MUTATED"   "TP53 MUTATED" "TP53 WILD-TYPE"   "TP53 MUTATED" 
    TCGA-55-5899     TCGA-55-6543     TCGA-55-6642     TCGA-55-6712 
  "TP53 MUTATED" "TP53 WILD-TYPE" "TP53 WILD-TYPE"   "TP53 MUTATED" 
    TCGA-64-1676     TCGA-64-1677     TCGA-64-1678     TCGA-64-1680 
"TP53 WILD-TYPE"   "TP53 MUTATED"   "TP53 MUTATED" "TP53 WILD-TYPE" 
    TCGA-64-5774     TCGA-64-5775     TCGA-64-5778     TCGA-64-5779 
"TP53 WILD-TYPE"   "TP53 MUTATED"   "TP53 MUTATED" "TP53 WILD-TYPE" 
    TCGA-64-5781     TCGA-64-5815     TCGA-67-3770     TCGA-67-3771 
"TP53 WILD-TYPE" "TP53 WILD-TYPE"   "TP53 MUTATED"   "TP53 MUTATED" 
    TCGA-67-3772     TCGA-67-3773     TCGA-67-3774     TCGA-67-6215 
"TP53 WILD-TYPE" "TP53 WILD-TYPE" "TP53 WILD-TYPE" "TP53 WILD-TYPE" 
    TCGA-67-6216     TCGA-67-6217     TCGA-71-6725     TCGA-73-4658 
"TP53 WILD-TYPE" "TP53 WILD-TYPE" "TP53 WILD-TYPE" "TP53 WILD-TYPE" 
    TCGA-73-4659     TCGA-73-4662     TCGA-73-4666     TCGA-73-4668 
"TP53 WILD-TYPE" "TP53 WILD-TYPE"   "TP53 MUTATED" "TP53 WILD-TYPE" 
    TCGA-73-4670     TCGA-73-4675     TCGA-73-4676     TCGA-73-4677 
  "TP53 MUTATED" "TP53 WILD-TYPE"   "TP53 MUTATED" "TP53 WILD-TYPE" 
    TCGA-91-6828     TCGA-91-6829     TCGA-91-6831     TCGA-91-6835 
"TP53 WILD-TYPE"   "TP53 MUTATED"   "TP53 MUTATED" "TP53 WILD-TYPE" 
    TCGA-91-6836 
  "TP53 MUTATED" 
    TCGA-05-4249     TCGA-05-4250     TCGA-05-4382     TCGA-05-4384 
"TP53 WILD-TYPE" "TP53 WILD-TYPE"   "TP53 MUTATED"   "TP53 MUTATED" 
    TCGA-05-4390     TCGA-05-4396     TCGA-05-4397     TCGA-05-4398 
"TP53 WILD-TYPE"   "TP53 MUTATED"   "TP53 MUTATED"   "TP53 MUTATED" 
    TCGA-05-4402     TCGA-05-4405     TCGA-05-4415     TCGA-05-4417 
  "TP53 MUTATED"   "TP53 MUTATED" "TP53 WILD-TYPE" "TP53 WILD-TYPE" 
    TCGA-05-4418     TCGA-05-4420     TCGA-05-4424     TCGA-05-4426 
"TP53 WILD-TYPE"   "TP53 MUTATED"   "TP53 MUTATED"   "TP53 MUTATED" 
    TCGA-05-4427     TCGA-05-4430     TCGA-05-4432     TCGA-05-4433 
  "TP53 MUTATED"   "TP53 MUTATED"   "TP53 MUTATED"   "TP53 MUTATED" 
    TCGA-05-4434     TCGA-05-5420     TCGA-05-5423     TCGA-05-5425 
"TP53 WILD-TYPE" "TP53 WILD-TYPE"   "TP53 MUTATED" "TP53 WILD-TYPE" 
    TCGA-05-5429     TCGA-05-5715     TCGA-35-3615     TCGA-35-4122 
"TP53 WILD-TYPE" "TP53 WILD-TYPE" "TP53 WILD-TYPE"   "TP53 MUTATED" 
    TCGA-35-4123     TCGA-35-5375     TCGA-38-4625     TCGA-38-4626 
  "TP53 MUTATED"   "TP53 MUTATED"   "TP53 MUTATED" "TP53 WILD-TYPE" 
    TCGA-38-4627     TCGA-38-4628     TCGA-38-4629     TCGA-38-4630 
"TP53 WILD-TYPE" "TP53 WILD-TYPE"   "TP53 MUTATED"   "TP53 MUTATED" 
    TCGA-38-4631     TCGA-38-4632     TCGA-38-6178     TCGA-44-2655 
"TP53 WILD-TYPE"   "TP53 MUTATED"   "TP53 MUTATED" "TP53 WILD-TYPE" 
    TCGA-44-2656     TCGA-44-2657     TCGA-44-2659     TCGA-44-2661 
"TP53 WILD-TYPE" "TP53 WILD-TYPE"   "TP53 MUTATED" "TP53 WILD-TYPE" 
    TCGA-44-2662     TCGA-44-2665     TCGA-44-2666     TCGA-44-2668 
  "TP53 MUTATED" "TP53 WILD-TYPE"   "TP53 MUTATED"   "TP53 MUTATED" 
    TCGA-44-3396     TCGA-44-3398     TCGA-44-3918     TCGA-44-3919 
  "TP53 MUTATED" "TP53 WILD-TYPE"   "TP53 MUTATED" "TP53 WILD-TYPE" 
    TCGA-44-4112     TCGA-44-5643     TCGA-44-5645     TCGA-44-6144 
"TP53 WILD-TYPE"   "TP53 MUTATED"   "TP53 MUTATED"   "TP53 MUTATED" 
    TCGA-44-6145     TCGA-44-6146     TCGA-44-6147     TCGA-44-6148 
  "TP53 MUTATED" "TP53 WILD-TYPE"   "TP53 MUTATED" "TP53 WILD-TYPE" 
    TCGA-44-6774     TCGA-44-6775     TCGA-44-6776     TCGA-44-6777 
  "TP53 MUTATED"   "TP53 MUTATED" "TP53 WILD-TYPE"   "TP53 MUTATED" 
    TCGA-44-6778     TCGA-44-6779     TCGA-49-4486     TCGA-49-4487 
  "TP53 MUTATED"   "TP53 MUTATED" "TP53 WILD-TYPE"   "TP53 MUTATED" 
    TCGA-49-4488     TCGA-49-4490     TCGA-49-4494     TCGA-49-4501 
"TP53 WILD-TYPE"   "TP53 MUTATED" "TP53 WILD-TYPE" "TP53 WILD-TYPE" 
    TCGA-49-4505     TCGA-49-4506     TCGA-49-4507     TCGA-49-4510 
  "TP53 MUTATED" "TP53 WILD-TYPE" "TP53 WILD-TYPE" "TP53 WILD-TYPE" 
    TCGA-49-4512     TCGA-49-4514     TCGA-49-6742     TCGA-49-6743 
"TP53 WILD-TYPE"   "TP53 MUTATED" "TP53 WILD-TYPE" "TP53 WILD-TYPE" 
    TCGA-49-6744     TCGA-49-6745     TCGA-50-5044     TCGA-50-5045 
"TP53 WILD-TYPE" "TP53 WILD-TYPE" "TP53 WILD-TYPE"   "TP53 MUTATED" 
    TCGA-50-5049     TCGA-50-5051     TCGA-50-5055     TCGA-50-5066 
  "TP53 MUTATED" "TP53 WILD-TYPE" "TP53 WILD-TYPE"   "TP53 MUTATED" 
    TCGA-50-5068     TCGA-50-5072     TCGA-50-5930     TCGA-50-5931 
  "TP53 MUTATED" "TP53 WILD-TYPE" "TP53 WILD-TYPE"   "TP53 MUTATED" 
    TCGA-50-5932     TCGA-50-5933     TCGA-50-5935     TCGA-50-5936 
"TP53 WILD-TYPE"   "TP53 MUTATED" "TP53 WILD-TYPE" "TP53 WILD-TYPE" 
    TCGA-50-5939     TCGA-50-5941     TCGA-50-5942     TCGA-50-5944 
  "TP53 MUTATED"   "TP53 MUTATED" "TP53 WILD-TYPE"   "TP53 MUTATED" 
    TCGA-50-5946     TCGA-50-6590     TCGA-50-6591     TCGA-50-6592 
  "TP53 MUTATED"   "TP53 MUTATED"   "TP53 MUTATED"   "TP53 MUTATED" 
    TCGA-50-6593     TCGA-50-6594     TCGA-50-6595     TCGA-50-6597 
  "TP53 MUTATED"   "TP53 MUTATED"   "TP53 MUTATED" "TP53 WILD-TYPE" 
    TCGA-55-1592     TCGA-55-1594     TCGA-55-1595     TCGA-55-1596 
  "TP53 MUTATED"   "TP53 MUTATED" "TP53 WILD-TYPE"   "TP53 MUTATED" 
    TCGA-55-5899     TCGA-55-6543     TCGA-55-6642     TCGA-55-6712 
  "TP53 MUTATED" "TP53 WILD-TYPE" "TP53 WILD-TYPE"   "TP53 MUTATED" 
    TCGA-64-1676     TCGA-64-1677     TCGA-64-1678     TCGA-64-1680 
"TP53 WILD-TYPE"   "TP53 MUTATED"   "TP53 MUTATED" "TP53 WILD-TYPE" 
    TCGA-64-5774     TCGA-64-5775     TCGA-64-5778     TCGA-64-5779 
"TP53 WILD-TYPE"   "TP53 MUTATED"   "TP53 MUTATED" "TP53 WILD-TYPE" 
    TCGA-64-5781     TCGA-64-5815     TCGA-67-3770     TCGA-67-3771 
"TP53 WILD-TYPE" "TP53 WILD-TYPE"   "TP53 MUTATED"   "TP53 MUTATED" 
    TCGA-67-3772     TCGA-67-3773     TCGA-67-3774     TCGA-67-6215 
"TP53 WILD-TYPE" "TP53 WILD-TYPE" "TP53 WILD-TYPE" "TP53 WILD-TYPE" 
    TCGA-67-6216     TCGA-67-6217     TCGA-71-6725     TCGA-73-4658 
"TP53 WILD-TYPE" "TP53 WILD-TYPE" "TP53 WILD-TYPE" "TP53 WILD-TYPE" 
    TCGA-73-4659     TCGA-73-4662     TCGA-73-4666     TCGA-73-4668 
"TP53 WILD-TYPE" "TP53 WILD-TYPE"   "TP53 MUTATED" "TP53 WILD-TYPE" 
    TCGA-73-4670     TCGA-73-4675     TCGA-73-4676     TCGA-73-4677 
  "TP53 MUTATED" "TP53 WILD-TYPE"   "TP53 MUTATED" "TP53 WILD-TYPE" 
    TCGA-91-6828     TCGA-91-6829     TCGA-91-6831     TCGA-91-6835 
"TP53 WILD-TYPE"   "TP53 MUTATED"   "TP53 MUTATED" "TP53 WILD-TYPE" 
    TCGA-91-6836 
  "TP53 MUTATED" 
[1] "hr=" "1.3"
D3V2, continuous
D3V3, binary
[1] "tbl2"
                cls
clus             [,1] [,2]
  TP53 MUTATED     43   42
  TP53 WILD-TYPE   50   37
        clus
vv       TP53 MUTATED TP53 WILD-TYPE
  FEMALE           43             50
  MALE             42             37
D3V4, continuous
D3V5, multiclass
D3V6, multiclass
    clus
vv   TP53 MUTATED TP53 WILD-TYPE
  T1           19             22
  T2           55             53
  T3            5              9
  T4            5              3
D3V7, multiclass
       clus
vv      TP53 MUTATED TP53 WILD-TYPE
  N0              47             48
  N1              17             20
  N2+N3           17             18
D3V8, multiclass
    clus
vv   TP53 MUTATED TP53 WILD-TYPE
  M0           65             72
  M1            5              4
  MX           12             10
D3V9, multiclass
     clus
vv    TP53 MUTATED TP53 WILD-TYPE
  I             44             44
  II            16             17
  III           19             20
  IV             5              4
D3V10, binary
[1] "tbl2"
                cls
clus             [,1] [,2]
  TP53 MUTATED      8   77
  TP53 WILD-TYPE    8   79
     clus
vv    TP53 MUTATED TP53 WILD-TYPE
  NO             8              8
  YES           77             79
D3V11, continuous
D3V12, continuous
D3V13, multiclass
                                             clus
vv                                            TP53 MUTATED TP53 WILD-TYPE
  CURRENT REFORMED SMOKER FOR < OR = 15 YEARS           33             29
  CURRENT REFORMED SMOKER FOR > 15 YEARS                19             27
  CURRENT SMOKER                                        20              8
  LIFELONG NON-SMOKER                                    7             17
D3V14, continuous

Clustering(4) Variable = STK11 MUTATION ANALYSIS
D4V1, survival
                 sevent
clus2              0  1
  STK11 MUTATED    9  8
  STK11 WILD-TYPE 90 42
  STK11 MUTATED STK11 WILD-TYPE 
             17             132 
  STK11 MUTATED STK11 WILD-TYPE 
              8              42 
$`STK11 MUTATED`
TCGA-05-4415 TCGA-05-4417 TCGA-05-4432 TCGA-35-3615 TCGA-44-6144 TCGA-44-6776 
        2.96        14.93        25.02         0.46         0.30        63.72 
TCGA-44-6779 TCGA-49-4486 TCGA-49-4487 TCGA-49-4507 TCGA-50-5072 TCGA-50-5932 
       16.41        76.21        28.11         8.81         8.05        35.87 
TCGA-50-5939 TCGA-55-1596 TCGA-67-3774 TCGA-73-4670 TCGA-73-4677 
       15.12        45.17         0.59         0.46         1.25 

$`STK11 WILD-TYPE`
TCGA-05-4249 TCGA-05-4250 TCGA-05-4382 TCGA-05-4384 TCGA-05-4390 TCGA-05-4396 
       38.07         3.98        19.92        14.01        37.02         9.96 
TCGA-05-4397 TCGA-05-4398 TCGA-05-4402 TCGA-05-4405 TCGA-05-4418 TCGA-05-4420 
       24.03        47.05         8.02        20.05         8.98        29.95 
TCGA-05-4424 TCGA-05-4426 TCGA-05-4427 TCGA-05-4430 TCGA-05-4433 TCGA-05-4434 
       30.02        26.01        26.01        25.02        24.00        15.02 
TCGA-05-5420 TCGA-05-5423 TCGA-05-5425 TCGA-05-5429 TCGA-05-5715 TCGA-35-4122 
        1.02         4.96         2.96         0.99         2.04         7.36 
TCGA-35-4123 TCGA-35-5375 TCGA-38-4625 TCGA-38-4626 TCGA-38-4627 TCGA-38-4628 
        5.95         8.68        47.61        85.32        37.71        49.02 
TCGA-38-4629 TCGA-38-4630 TCGA-38-4631 TCGA-38-4632 TCGA-38-6178 TCGA-44-2655 
       28.37        35.28        11.64        44.61         5.19        18.87 
TCGA-44-2656 TCGA-44-2657 TCGA-44-2659 TCGA-44-2661 TCGA-44-2662 TCGA-44-2665 
       19.10        13.15        17.39         3.39        15.78        13.15 
TCGA-44-2666 TCGA-44-2668 TCGA-44-3396 TCGA-44-3398 TCGA-44-3918 TCGA-44-3919 
        3.19         8.09        10.22         8.32         6.44         6.21 
TCGA-44-4112 TCGA-44-5643 TCGA-44-5645 TCGA-44-6145 TCGA-44-6146 TCGA-44-6147 
        4.60         3.48         6.84         3.35         9.93         7.76 
TCGA-44-6148 TCGA-44-6774 TCGA-44-6775 TCGA-44-6777 TCGA-44-6778 TCGA-49-4488 
        3.12         5.42         2.70        32.45        36.49        28.57 
TCGA-49-4490 TCGA-49-4494 TCGA-49-4501 TCGA-49-4505 TCGA-49-4506 TCGA-49-4510 
       12.66        35.54        46.72        14.07        32.84        29.46 
TCGA-49-4512 TCGA-49-4514 TCGA-49-6742 TCGA-49-6743 TCGA-49-6744 TCGA-49-6745 
       29.75        43.20        15.02        12.13        12.99         4.93 
TCGA-50-5044 TCGA-50-5045 TCGA-50-5049 TCGA-50-5051 TCGA-50-5055 TCGA-50-5066 
       20.48        71.47        48.82        14.96        25.81         9.76 
TCGA-50-5068 TCGA-50-5930 TCGA-50-5931 TCGA-50-5933 TCGA-50-5935 TCGA-50-5936 
       49.28         9.27         8.78        77.88        21.47         8.45 
TCGA-50-5941 TCGA-50-5942 TCGA-50-5944 TCGA-50-5946 TCGA-50-6590 TCGA-50-6591 
        9.37         4.44        12.26        11.47        42.31         3.88 
TCGA-50-6592 TCGA-50-6593 TCGA-50-6594 TCGA-50-6595 TCGA-50-6597 TCGA-55-1592 
       25.51        11.05        12.16         6.21        33.37        23.05 
TCGA-55-1594 TCGA-55-1595 TCGA-55-5899 TCGA-55-6543 TCGA-55-6642 TCGA-55-6712 
       38.73        48.62         2.86         0.07        32.61         0.79 
TCGA-64-1676 TCGA-64-1677 TCGA-64-1678 TCGA-64-1680 TCGA-64-5774 TCGA-64-5775 
       56.81        20.65        39.09        37.02        83.84         0.10 
TCGA-64-5778 TCGA-64-5779 TCGA-64-5781 TCGA-64-5815 TCGA-67-3770 TCGA-67-3771 
       30.44        16.67        39.52         7.33         0.99         1.97 
TCGA-67-3772 TCGA-67-3773 TCGA-67-6215 TCGA-67-6216 TCGA-67-6217 TCGA-71-6725 
        0.59         2.04         0.89         0.69        13.87         2.01 
TCGA-73-4658 TCGA-73-4659 TCGA-73-4662 TCGA-73-4666 TCGA-73-4668 TCGA-73-4675 
       52.57        23.38        29.95        20.28        15.35         1.32 
TCGA-73-4676 TCGA-91-6828 TCGA-91-6829 TCGA-91-6831 TCGA-91-6835 TCGA-91-6836 
        4.01         1.22        41.33         1.28         1.15         0.36 

  STK11 MUTATED STK11 WILD-TYPE 
           0.30            0.07 
  STK11 MUTATED STK11 WILD-TYPE 
          76.21           85.32 
  STK11 MUTATED STK11 WILD-TYPE 
          14.93           13.51 
[1] "0.3 - 76.2 (14.9)" "0.1 - 85.3 (13.5)"
     TCGA-05-4249      TCGA-05-4250      TCGA-05-4382      TCGA-05-4384 
"STK11 WILD-TYPE" "STK11 WILD-TYPE" "STK11 WILD-TYPE" "STK11 WILD-TYPE" 
     TCGA-05-4390      TCGA-05-4396      TCGA-05-4397      TCGA-05-4398 
"STK11 WILD-TYPE" "STK11 WILD-TYPE" "STK11 WILD-TYPE" "STK11 WILD-TYPE" 
     TCGA-05-4402      TCGA-05-4405      TCGA-05-4415      TCGA-05-4417 
"STK11 WILD-TYPE" "STK11 WILD-TYPE"   "STK11 MUTATED"   "STK11 MUTATED" 
     TCGA-05-4418      TCGA-05-4420      TCGA-05-4424      TCGA-05-4426 
"STK11 WILD-TYPE" "STK11 WILD-TYPE" "STK11 WILD-TYPE" "STK11 WILD-TYPE" 
     TCGA-05-4427      TCGA-05-4430      TCGA-05-4432      TCGA-05-4433 
"STK11 WILD-TYPE" "STK11 WILD-TYPE"   "STK11 MUTATED" "STK11 WILD-TYPE" 
     TCGA-05-4434      TCGA-05-5420      TCGA-05-5423      TCGA-05-5425 
"STK11 WILD-TYPE" "STK11 WILD-TYPE" "STK11 WILD-TYPE" "STK11 WILD-TYPE" 
     TCGA-05-5429      TCGA-05-5715      TCGA-35-3615      TCGA-35-4122 
"STK11 WILD-TYPE" "STK11 WILD-TYPE"   "STK11 MUTATED" "STK11 WILD-TYPE" 
     TCGA-35-4123      TCGA-35-5375      TCGA-38-4625      TCGA-38-4626 
"STK11 WILD-TYPE" "STK11 WILD-TYPE" "STK11 WILD-TYPE" "STK11 WILD-TYPE" 
     TCGA-38-4627      TCGA-38-4628      TCGA-38-4629      TCGA-38-4630 
"STK11 WILD-TYPE" "STK11 WILD-TYPE" "STK11 WILD-TYPE" "STK11 WILD-TYPE" 
     TCGA-38-4631      TCGA-38-4632      TCGA-38-6178      TCGA-44-2655 
"STK11 WILD-TYPE" "STK11 WILD-TYPE" "STK11 WILD-TYPE" "STK11 WILD-TYPE" 
     TCGA-44-2656      TCGA-44-2657      TCGA-44-2659      TCGA-44-2661 
"STK11 WILD-TYPE" "STK11 WILD-TYPE" "STK11 WILD-TYPE" "STK11 WILD-TYPE" 
     TCGA-44-2662      TCGA-44-2665      TCGA-44-2666      TCGA-44-2668 
"STK11 WILD-TYPE" "STK11 WILD-TYPE" "STK11 WILD-TYPE" "STK11 WILD-TYPE" 
     TCGA-44-3396      TCGA-44-3398      TCGA-44-3918      TCGA-44-3919 
"STK11 WILD-TYPE" "STK11 WILD-TYPE" "STK11 WILD-TYPE" "STK11 WILD-TYPE" 
     TCGA-44-4112      TCGA-44-5643      TCGA-44-5645      TCGA-44-6144 
"STK11 WILD-TYPE" "STK11 WILD-TYPE" "STK11 WILD-TYPE"   "STK11 MUTATED" 
     TCGA-44-6145      TCGA-44-6146      TCGA-44-6147      TCGA-44-6148 
"STK11 WILD-TYPE" "STK11 WILD-TYPE" "STK11 WILD-TYPE" "STK11 WILD-TYPE" 
     TCGA-44-6774      TCGA-44-6775      TCGA-44-6776      TCGA-44-6777 
"STK11 WILD-TYPE" "STK11 WILD-TYPE"   "STK11 MUTATED" "STK11 WILD-TYPE" 
     TCGA-44-6778      TCGA-44-6779      TCGA-49-4486      TCGA-49-4487 
"STK11 WILD-TYPE"   "STK11 MUTATED"   "STK11 MUTATED"   "STK11 MUTATED" 
     TCGA-49-4488      TCGA-49-4490      TCGA-49-4494      TCGA-49-4501 
"STK11 WILD-TYPE" "STK11 WILD-TYPE" "STK11 WILD-TYPE" "STK11 WILD-TYPE" 
     TCGA-49-4505      TCGA-49-4506      TCGA-49-4507      TCGA-49-4510 
"STK11 WILD-TYPE" "STK11 WILD-TYPE"   "STK11 MUTATED" "STK11 WILD-TYPE" 
     TCGA-49-4512      TCGA-49-4514      TCGA-49-6742      TCGA-49-6743 
"STK11 WILD-TYPE" "STK11 WILD-TYPE" "STK11 WILD-TYPE" "STK11 WILD-TYPE" 
     TCGA-49-6744      TCGA-49-6745      TCGA-50-5044      TCGA-50-5045 
"STK11 WILD-TYPE" "STK11 WILD-TYPE" "STK11 WILD-TYPE" "STK11 WILD-TYPE" 
     TCGA-50-5049      TCGA-50-5051      TCGA-50-5055      TCGA-50-5066 
"STK11 WILD-TYPE" "STK11 WILD-TYPE" "STK11 WILD-TYPE" "STK11 WILD-TYPE" 
     TCGA-50-5068      TCGA-50-5072      TCGA-50-5930      TCGA-50-5931 
"STK11 WILD-TYPE"   "STK11 MUTATED" "STK11 WILD-TYPE" "STK11 WILD-TYPE" 
     TCGA-50-5932      TCGA-50-5933      TCGA-50-5935      TCGA-50-5936 
  "STK11 MUTATED" "STK11 WILD-TYPE" "STK11 WILD-TYPE" "STK11 WILD-TYPE" 
     TCGA-50-5939      TCGA-50-5941      TCGA-50-5942      TCGA-50-5944 
  "STK11 MUTATED" "STK11 WILD-TYPE" "STK11 WILD-TYPE" "STK11 WILD-TYPE" 
     TCGA-50-5946      TCGA-50-6590      TCGA-50-6591      TCGA-50-6592 
"STK11 WILD-TYPE" "STK11 WILD-TYPE" "STK11 WILD-TYPE" "STK11 WILD-TYPE" 
     TCGA-50-6593      TCGA-50-6594      TCGA-50-6595      TCGA-50-6597 
"STK11 WILD-TYPE" "STK11 WILD-TYPE" "STK11 WILD-TYPE" "STK11 WILD-TYPE" 
     TCGA-55-1592      TCGA-55-1594      TCGA-55-1595      TCGA-55-1596 
"STK11 WILD-TYPE" "STK11 WILD-TYPE" "STK11 WILD-TYPE"   "STK11 MUTATED" 
     TCGA-55-5899      TCGA-55-6543      TCGA-55-6642      TCGA-55-6712 
"STK11 WILD-TYPE" "STK11 WILD-TYPE" "STK11 WILD-TYPE" "STK11 WILD-TYPE" 
     TCGA-64-1676      TCGA-64-1677      TCGA-64-1678      TCGA-64-1680 
"STK11 WILD-TYPE" "STK11 WILD-TYPE" "STK11 WILD-TYPE" "STK11 WILD-TYPE" 
     TCGA-64-5774      TCGA-64-5775      TCGA-64-5778      TCGA-64-5779 
"STK11 WILD-TYPE" "STK11 WILD-TYPE" "STK11 WILD-TYPE" "STK11 WILD-TYPE" 
     TCGA-64-5781      TCGA-64-5815      TCGA-67-3770      TCGA-67-3771 
"STK11 WILD-TYPE" "STK11 WILD-TYPE" "STK11 WILD-TYPE" "STK11 WILD-TYPE" 
     TCGA-67-3772      TCGA-67-3773      TCGA-67-3774      TCGA-67-6215 
"STK11 WILD-TYPE" "STK11 WILD-TYPE"   "STK11 MUTATED" "STK11 WILD-TYPE" 
     TCGA-67-6216      TCGA-67-6217      TCGA-71-6725      TCGA-73-4658 
"STK11 WILD-TYPE" "STK11 WILD-TYPE" "STK11 WILD-TYPE" "STK11 WILD-TYPE" 
     TCGA-73-4659      TCGA-73-4662      TCGA-73-4666      TCGA-73-4668 
"STK11 WILD-TYPE" "STK11 WILD-TYPE" "STK11 WILD-TYPE" "STK11 WILD-TYPE" 
     TCGA-73-4670      TCGA-73-4675      TCGA-73-4676      TCGA-73-4677 
  "STK11 MUTATED" "STK11 WILD-TYPE" "STK11 WILD-TYPE"   "STK11 MUTATED" 
     TCGA-91-6828      TCGA-91-6829      TCGA-91-6831      TCGA-91-6835 
"STK11 WILD-TYPE" "STK11 WILD-TYPE" "STK11 WILD-TYPE" "STK11 WILD-TYPE" 
     TCGA-91-6836 
"STK11 WILD-TYPE" 
     TCGA-05-4249      TCGA-05-4250      TCGA-05-4382      TCGA-05-4384 
"STK11 WILD-TYPE" "STK11 WILD-TYPE" "STK11 WILD-TYPE" "STK11 WILD-TYPE" 
     TCGA-05-4390      TCGA-05-4396      TCGA-05-4397      TCGA-05-4398 
"STK11 WILD-TYPE" "STK11 WILD-TYPE" "STK11 WILD-TYPE" "STK11 WILD-TYPE" 
     TCGA-05-4402      TCGA-05-4405      TCGA-05-4415      TCGA-05-4417 
"STK11 WILD-TYPE" "STK11 WILD-TYPE"   "STK11 MUTATED"   "STK11 MUTATED" 
     TCGA-05-4418      TCGA-05-4420      TCGA-05-4424      TCGA-05-4426 
"STK11 WILD-TYPE" "STK11 WILD-TYPE" "STK11 WILD-TYPE" "STK11 WILD-TYPE" 
     TCGA-05-4427      TCGA-05-4430      TCGA-05-4432      TCGA-05-4433 
"STK11 WILD-TYPE" "STK11 WILD-TYPE"   "STK11 MUTATED" "STK11 WILD-TYPE" 
     TCGA-05-4434      TCGA-05-5420      TCGA-05-5423      TCGA-05-5425 
"STK11 WILD-TYPE" "STK11 WILD-TYPE" "STK11 WILD-TYPE" "STK11 WILD-TYPE" 
     TCGA-05-5429      TCGA-05-5715      TCGA-35-3615      TCGA-35-4122 
"STK11 WILD-TYPE" "STK11 WILD-TYPE"   "STK11 MUTATED" "STK11 WILD-TYPE" 
     TCGA-35-4123      TCGA-35-5375      TCGA-38-4625      TCGA-38-4626 
"STK11 WILD-TYPE" "STK11 WILD-TYPE" "STK11 WILD-TYPE" "STK11 WILD-TYPE" 
     TCGA-38-4627      TCGA-38-4628      TCGA-38-4629      TCGA-38-4630 
"STK11 WILD-TYPE" "STK11 WILD-TYPE" "STK11 WILD-TYPE" "STK11 WILD-TYPE" 
     TCGA-38-4631      TCGA-38-4632      TCGA-38-6178      TCGA-44-2655 
"STK11 WILD-TYPE" "STK11 WILD-TYPE" "STK11 WILD-TYPE" "STK11 WILD-TYPE" 
     TCGA-44-2656      TCGA-44-2657      TCGA-44-2659      TCGA-44-2661 
"STK11 WILD-TYPE" "STK11 WILD-TYPE" "STK11 WILD-TYPE" "STK11 WILD-TYPE" 
     TCGA-44-2662      TCGA-44-2665      TCGA-44-2666      TCGA-44-2668 
"STK11 WILD-TYPE" "STK11 WILD-TYPE" "STK11 WILD-TYPE" "STK11 WILD-TYPE" 
     TCGA-44-3396      TCGA-44-3398      TCGA-44-3918      TCGA-44-3919 
"STK11 WILD-TYPE" "STK11 WILD-TYPE" "STK11 WILD-TYPE" "STK11 WILD-TYPE" 
     TCGA-44-4112      TCGA-44-5643      TCGA-44-5645      TCGA-44-6144 
"STK11 WILD-TYPE" "STK11 WILD-TYPE" "STK11 WILD-TYPE"   "STK11 MUTATED" 
     TCGA-44-6145      TCGA-44-6146      TCGA-44-6147      TCGA-44-6148 
"STK11 WILD-TYPE" "STK11 WILD-TYPE" "STK11 WILD-TYPE" "STK11 WILD-TYPE" 
     TCGA-44-6774      TCGA-44-6775      TCGA-44-6776      TCGA-44-6777 
"STK11 WILD-TYPE" "STK11 WILD-TYPE"   "STK11 MUTATED" "STK11 WILD-TYPE" 
     TCGA-44-6778      TCGA-44-6779      TCGA-49-4486      TCGA-49-4487 
"STK11 WILD-TYPE"   "STK11 MUTATED"   "STK11 MUTATED"   "STK11 MUTATED" 
     TCGA-49-4488      TCGA-49-4490      TCGA-49-4494      TCGA-49-4501 
"STK11 WILD-TYPE" "STK11 WILD-TYPE" "STK11 WILD-TYPE" "STK11 WILD-TYPE" 
     TCGA-49-4505      TCGA-49-4506      TCGA-49-4507      TCGA-49-4510 
"STK11 WILD-TYPE" "STK11 WILD-TYPE"   "STK11 MUTATED" "STK11 WILD-TYPE" 
     TCGA-49-4512      TCGA-49-4514      TCGA-49-6742      TCGA-49-6743 
"STK11 WILD-TYPE" "STK11 WILD-TYPE" "STK11 WILD-TYPE" "STK11 WILD-TYPE" 
     TCGA-49-6744      TCGA-49-6745      TCGA-50-5044      TCGA-50-5045 
"STK11 WILD-TYPE" "STK11 WILD-TYPE" "STK11 WILD-TYPE" "STK11 WILD-TYPE" 
     TCGA-50-5049      TCGA-50-5051      TCGA-50-5055      TCGA-50-5066 
"STK11 WILD-TYPE" "STK11 WILD-TYPE" "STK11 WILD-TYPE" "STK11 WILD-TYPE" 
     TCGA-50-5068      TCGA-50-5072      TCGA-50-5930      TCGA-50-5931 
"STK11 WILD-TYPE"   "STK11 MUTATED" "STK11 WILD-TYPE" "STK11 WILD-TYPE" 
     TCGA-50-5932      TCGA-50-5933      TCGA-50-5935      TCGA-50-5936 
  "STK11 MUTATED" "STK11 WILD-TYPE" "STK11 WILD-TYPE" "STK11 WILD-TYPE" 
     TCGA-50-5939      TCGA-50-5941      TCGA-50-5942      TCGA-50-5944 
  "STK11 MUTATED" "STK11 WILD-TYPE" "STK11 WILD-TYPE" "STK11 WILD-TYPE" 
     TCGA-50-5946      TCGA-50-6590      TCGA-50-6591      TCGA-50-6592 
"STK11 WILD-TYPE" "STK11 WILD-TYPE" "STK11 WILD-TYPE" "STK11 WILD-TYPE" 
     TCGA-50-6593      TCGA-50-6594      TCGA-50-6595      TCGA-50-6597 
"STK11 WILD-TYPE" "STK11 WILD-TYPE" "STK11 WILD-TYPE" "STK11 WILD-TYPE" 
     TCGA-55-1592      TCGA-55-1594      TCGA-55-1595      TCGA-55-1596 
"STK11 WILD-TYPE" "STK11 WILD-TYPE" "STK11 WILD-TYPE"   "STK11 MUTATED" 
     TCGA-55-5899      TCGA-55-6543      TCGA-55-6642      TCGA-55-6712 
"STK11 WILD-TYPE" "STK11 WILD-TYPE" "STK11 WILD-TYPE" "STK11 WILD-TYPE" 
     TCGA-64-1676      TCGA-64-1677      TCGA-64-1678      TCGA-64-1680 
"STK11 WILD-TYPE" "STK11 WILD-TYPE" "STK11 WILD-TYPE" "STK11 WILD-TYPE" 
     TCGA-64-5774      TCGA-64-5775      TCGA-64-5778      TCGA-64-5779 
"STK11 WILD-TYPE" "STK11 WILD-TYPE" "STK11 WILD-TYPE" "STK11 WILD-TYPE" 
     TCGA-64-5781      TCGA-64-5815      TCGA-67-3770      TCGA-67-3771 
"STK11 WILD-TYPE" "STK11 WILD-TYPE" "STK11 WILD-TYPE" "STK11 WILD-TYPE" 
     TCGA-67-3772      TCGA-67-3773      TCGA-67-3774      TCGA-67-6215 
"STK11 WILD-TYPE" "STK11 WILD-TYPE"   "STK11 MUTATED" "STK11 WILD-TYPE" 
     TCGA-67-6216      TCGA-67-6217      TCGA-71-6725      TCGA-73-4658 
"STK11 WILD-TYPE" "STK11 WILD-TYPE" "STK11 WILD-TYPE" "STK11 WILD-TYPE" 
     TCGA-73-4659      TCGA-73-4662      TCGA-73-4666      TCGA-73-4668 
"STK11 WILD-TYPE" "STK11 WILD-TYPE" "STK11 WILD-TYPE" "STK11 WILD-TYPE" 
     TCGA-73-4670      TCGA-73-4675      TCGA-73-4676      TCGA-73-4677 
  "STK11 MUTATED" "STK11 WILD-TYPE" "STK11 WILD-TYPE"   "STK11 MUTATED" 
     TCGA-91-6828      TCGA-91-6829      TCGA-91-6831      TCGA-91-6835 
"STK11 WILD-TYPE" "STK11 WILD-TYPE" "STK11 WILD-TYPE" "STK11 WILD-TYPE" 
     TCGA-91-6836 
"STK11 WILD-TYPE" 
     TCGA-05-4249      TCGA-05-4250      TCGA-05-4382      TCGA-05-4384 
"STK11 WILD-TYPE" "STK11 WILD-TYPE" "STK11 WILD-TYPE" "STK11 WILD-TYPE" 
     TCGA-05-4390      TCGA-05-4396      TCGA-05-4397      TCGA-05-4398 
"STK11 WILD-TYPE" "STK11 WILD-TYPE" "STK11 WILD-TYPE" "STK11 WILD-TYPE" 
     TCGA-05-4402      TCGA-05-4405      TCGA-05-4415      TCGA-05-4417 
"STK11 WILD-TYPE" "STK11 WILD-TYPE"   "STK11 MUTATED"   "STK11 MUTATED" 
     TCGA-05-4418      TCGA-05-4420      TCGA-05-4424      TCGA-05-4426 
"STK11 WILD-TYPE" "STK11 WILD-TYPE" "STK11 WILD-TYPE" "STK11 WILD-TYPE" 
     TCGA-05-4427      TCGA-05-4430      TCGA-05-4432      TCGA-05-4433 
"STK11 WILD-TYPE" "STK11 WILD-TYPE"   "STK11 MUTATED" "STK11 WILD-TYPE" 
     TCGA-05-4434      TCGA-05-5420      TCGA-05-5423      TCGA-05-5425 
"STK11 WILD-TYPE" "STK11 WILD-TYPE" "STK11 WILD-TYPE" "STK11 WILD-TYPE" 
     TCGA-05-5429      TCGA-05-5715      TCGA-35-3615      TCGA-35-4122 
"STK11 WILD-TYPE" "STK11 WILD-TYPE"   "STK11 MUTATED" "STK11 WILD-TYPE" 
     TCGA-35-4123      TCGA-35-5375      TCGA-38-4625      TCGA-38-4626 
"STK11 WILD-TYPE" "STK11 WILD-TYPE" "STK11 WILD-TYPE" "STK11 WILD-TYPE" 
     TCGA-38-4627      TCGA-38-4628      TCGA-38-4629      TCGA-38-4630 
"STK11 WILD-TYPE" "STK11 WILD-TYPE" "STK11 WILD-TYPE" "STK11 WILD-TYPE" 
     TCGA-38-4631      TCGA-38-4632      TCGA-38-6178      TCGA-44-2655 
"STK11 WILD-TYPE" "STK11 WILD-TYPE" "STK11 WILD-TYPE" "STK11 WILD-TYPE" 
     TCGA-44-2656      TCGA-44-2657      TCGA-44-2659      TCGA-44-2661 
"STK11 WILD-TYPE" "STK11 WILD-TYPE" "STK11 WILD-TYPE" "STK11 WILD-TYPE" 
     TCGA-44-2662      TCGA-44-2665      TCGA-44-2666      TCGA-44-2668 
"STK11 WILD-TYPE" "STK11 WILD-TYPE" "STK11 WILD-TYPE" "STK11 WILD-TYPE" 
     TCGA-44-3396      TCGA-44-3398      TCGA-44-3918      TCGA-44-3919 
"STK11 WILD-TYPE" "STK11 WILD-TYPE" "STK11 WILD-TYPE" "STK11 WILD-TYPE" 
     TCGA-44-4112      TCGA-44-5643      TCGA-44-5645      TCGA-44-6144 
"STK11 WILD-TYPE" "STK11 WILD-TYPE" "STK11 WILD-TYPE"   "STK11 MUTATED" 
     TCGA-44-6145      TCGA-44-6146      TCGA-44-6147      TCGA-44-6148 
"STK11 WILD-TYPE" "STK11 WILD-TYPE" "STK11 WILD-TYPE" "STK11 WILD-TYPE" 
     TCGA-44-6774      TCGA-44-6775      TCGA-44-6776      TCGA-44-6777 
"STK11 WILD-TYPE" "STK11 WILD-TYPE"   "STK11 MUTATED" "STK11 WILD-TYPE" 
     TCGA-44-6778      TCGA-44-6779      TCGA-49-4486      TCGA-49-4487 
"STK11 WILD-TYPE"   "STK11 MUTATED"   "STK11 MUTATED"   "STK11 MUTATED" 
     TCGA-49-4488      TCGA-49-4490      TCGA-49-4494      TCGA-49-4501 
"STK11 WILD-TYPE" "STK11 WILD-TYPE" "STK11 WILD-TYPE" "STK11 WILD-TYPE" 
     TCGA-49-4505      TCGA-49-4506      TCGA-49-4507      TCGA-49-4510 
"STK11 WILD-TYPE" "STK11 WILD-TYPE"   "STK11 MUTATED" "STK11 WILD-TYPE" 
     TCGA-49-4512      TCGA-49-4514      TCGA-49-6742      TCGA-49-6743 
"STK11 WILD-TYPE" "STK11 WILD-TYPE" "STK11 WILD-TYPE" "STK11 WILD-TYPE" 
     TCGA-49-6744      TCGA-49-6745      TCGA-50-5044      TCGA-50-5045 
"STK11 WILD-TYPE" "STK11 WILD-TYPE" "STK11 WILD-TYPE" "STK11 WILD-TYPE" 
     TCGA-50-5049      TCGA-50-5051      TCGA-50-5055      TCGA-50-5066 
"STK11 WILD-TYPE" "STK11 WILD-TYPE" "STK11 WILD-TYPE" "STK11 WILD-TYPE" 
     TCGA-50-5068      TCGA-50-5072      TCGA-50-5930      TCGA-50-5931 
"STK11 WILD-TYPE"   "STK11 MUTATED" "STK11 WILD-TYPE" "STK11 WILD-TYPE" 
     TCGA-50-5932      TCGA-50-5933      TCGA-50-5935      TCGA-50-5936 
  "STK11 MUTATED" "STK11 WILD-TYPE" "STK11 WILD-TYPE" "STK11 WILD-TYPE" 
     TCGA-50-5939      TCGA-50-5941      TCGA-50-5942      TCGA-50-5944 
  "STK11 MUTATED" "STK11 WILD-TYPE" "STK11 WILD-TYPE" "STK11 WILD-TYPE" 
     TCGA-50-5946      TCGA-50-6590      TCGA-50-6591      TCGA-50-6592 
"STK11 WILD-TYPE" "STK11 WILD-TYPE" "STK11 WILD-TYPE" "STK11 WILD-TYPE" 
     TCGA-50-6593      TCGA-50-6594      TCGA-50-6595      TCGA-50-6597 
"STK11 WILD-TYPE" "STK11 WILD-TYPE" "STK11 WILD-TYPE" "STK11 WILD-TYPE" 
     TCGA-55-1592      TCGA-55-1594      TCGA-55-1595      TCGA-55-1596 
"STK11 WILD-TYPE" "STK11 WILD-TYPE" "STK11 WILD-TYPE"   "STK11 MUTATED" 
     TCGA-55-5899      TCGA-55-6543      TCGA-55-6642      TCGA-55-6712 
"STK11 WILD-TYPE" "STK11 WILD-TYPE" "STK11 WILD-TYPE" "STK11 WILD-TYPE" 
     TCGA-64-1676      TCGA-64-1677      TCGA-64-1678      TCGA-64-1680 
"STK11 WILD-TYPE" "STK11 WILD-TYPE" "STK11 WILD-TYPE" "STK11 WILD-TYPE" 
     TCGA-64-5774      TCGA-64-5775      TCGA-64-5778      TCGA-64-5779 
"STK11 WILD-TYPE" "STK11 WILD-TYPE" "STK11 WILD-TYPE" "STK11 WILD-TYPE" 
     TCGA-64-5781      TCGA-64-5815      TCGA-67-3770      TCGA-67-3771 
"STK11 WILD-TYPE" "STK11 WILD-TYPE" "STK11 WILD-TYPE" "STK11 WILD-TYPE" 
     TCGA-67-3772      TCGA-67-3773      TCGA-67-3774      TCGA-67-6215 
"STK11 WILD-TYPE" "STK11 WILD-TYPE"   "STK11 MUTATED" "STK11 WILD-TYPE" 
     TCGA-67-6216      TCGA-67-6217      TCGA-71-6725      TCGA-73-4658 
"STK11 WILD-TYPE" "STK11 WILD-TYPE" "STK11 WILD-TYPE" "STK11 WILD-TYPE" 
     TCGA-73-4659      TCGA-73-4662      TCGA-73-4666      TCGA-73-4668 
"STK11 WILD-TYPE" "STK11 WILD-TYPE" "STK11 WILD-TYPE" "STK11 WILD-TYPE" 
     TCGA-73-4670      TCGA-73-4675      TCGA-73-4676      TCGA-73-4677 
  "STK11 MUTATED" "STK11 WILD-TYPE" "STK11 WILD-TYPE"   "STK11 MUTATED" 
     TCGA-91-6828      TCGA-91-6829      TCGA-91-6831      TCGA-91-6835 
"STK11 WILD-TYPE" "STK11 WILD-TYPE" "STK11 WILD-TYPE" "STK11 WILD-TYPE" 
     TCGA-91-6836 
"STK11 WILD-TYPE" 
[1] "hr=" "1.4"
D4V2, continuous
D4V3, binary
[1] "tbl2"
                 cls
clus              [,1] [,2]
  STK11 MUTATED      7   13
  STK11 WILD-TYPE   86   66
        clus
vv       STK11 MUTATED STK11 WILD-TYPE
  FEMALE             7              86
  MALE              13              66
D4V4, continuous
D4V5, multiclass
D4V6, multiclass
    clus
vv   STK11 MUTATED STK11 WILD-TYPE
  T1             4              37
  T2            13              95
  T3             1              13
  T4             2               6
D4V7, multiclass
       clus
vv      STK11 MUTATED STK11 WILD-TYPE
  N0               12              83
  N1                5              32
  N2+N3             3              32
D4V8, multiclass
    clus
vv   STK11 MUTATED STK11 WILD-TYPE
  M0            17             120
  M1             1               8
  MX             2              20
D4V9, multiclass
     clus
vv    STK11 MUTATED STK11 WILD-TYPE
  I              11              77
  II              4              29
  III             4              35
  IV              1               8
D4V10, binary
[1] "tbl2"
                 cls
clus              [,1] [,2]
  STK11 MUTATED      2   18
  STK11 WILD-TYPE   14  138
     clus
vv    STK11 MUTATED STK11 WILD-TYPE
  NO              2              14
  YES            18             138
D4V11, continuous
D4V12, continuous
D4V13, multiclass
                                             clus
vv                                            STK11 MUTATED STK11 WILD-TYPE
  CURRENT REFORMED SMOKER FOR < OR = 15 YEARS             8              54
  CURRENT REFORMED SMOKER FOR > 15 YEARS                  6              40
  CURRENT SMOKER                                          3              25
  LIFELONG NON-SMOKER                                     2              22
D4V14, continuous

Clustering(5) Variable = NAV3 MUTATION ANALYSIS
D5V1, survival
                sevent
clus2             0  1
  NAV3 MUTATED   22 11
  NAV3 WILD-TYPE 77 39
  NAV3 MUTATED NAV3 WILD-TYPE 
            33            116 
  NAV3 MUTATED NAV3 WILD-TYPE 
            11             39 
$`NAV3 MUTATED`
TCGA-05-4382 TCGA-05-4384 TCGA-05-4390 TCGA-05-4396 TCGA-05-4398 TCGA-05-4415 
       19.92        14.01        37.02         9.96        47.05         2.96 
TCGA-05-4432 TCGA-35-4122 TCGA-38-4631 TCGA-38-4632 TCGA-44-2662 TCGA-44-3918 
       25.02         7.36        11.64        44.61        15.78         6.44 
TCGA-44-6774 TCGA-49-4488 TCGA-49-4505 TCGA-49-4514 TCGA-49-6743 TCGA-49-6744 
        5.42        28.57        14.07        43.20        12.13        12.99 
TCGA-50-5045 TCGA-50-5049 TCGA-50-5068 TCGA-50-5939 TCGA-50-5941 TCGA-55-5899 
       71.47        48.82        49.28        15.12         9.37         2.86 
TCGA-64-1677 TCGA-64-5781 TCGA-67-3771 TCGA-67-3773 TCGA-67-6217 TCGA-73-4659 
       20.65        39.52         1.97         2.04        13.87        23.38 
TCGA-73-4666 TCGA-73-4668 TCGA-91-6836 
       20.28        15.35         0.36 

$`NAV3 WILD-TYPE`
TCGA-05-4249 TCGA-05-4250 TCGA-05-4397 TCGA-05-4402 TCGA-05-4405 TCGA-05-4417 
       38.07         3.98        24.03         8.02        20.05        14.93 
TCGA-05-4418 TCGA-05-4420 TCGA-05-4424 TCGA-05-4426 TCGA-05-4427 TCGA-05-4430 
        8.98        29.95        30.02        26.01        26.01        25.02 
TCGA-05-4433 TCGA-05-4434 TCGA-05-5420 TCGA-05-5423 TCGA-05-5425 TCGA-05-5429 
       24.00        15.02         1.02         4.96         2.96         0.99 
TCGA-05-5715 TCGA-35-3615 TCGA-35-4123 TCGA-35-5375 TCGA-38-4625 TCGA-38-4626 
        2.04         0.46         5.95         8.68        47.61        85.32 
TCGA-38-4627 TCGA-38-4628 TCGA-38-4629 TCGA-38-4630 TCGA-38-6178 TCGA-44-2655 
       37.71        49.02        28.37        35.28         5.19        18.87 
TCGA-44-2656 TCGA-44-2657 TCGA-44-2659 TCGA-44-2661 TCGA-44-2665 TCGA-44-2666 
       19.10        13.15        17.39         3.39        13.15         3.19 
TCGA-44-2668 TCGA-44-3396 TCGA-44-3398 TCGA-44-3919 TCGA-44-4112 TCGA-44-5643 
        8.09        10.22         8.32         6.21         4.60         3.48 
TCGA-44-5645 TCGA-44-6144 TCGA-44-6145 TCGA-44-6146 TCGA-44-6147 TCGA-44-6148 
        6.84         0.30         3.35         9.93         7.76         3.12 
TCGA-44-6775 TCGA-44-6776 TCGA-44-6777 TCGA-44-6778 TCGA-44-6779 TCGA-49-4486 
        2.70        63.72        32.45        36.49        16.41        76.21 
TCGA-49-4487 TCGA-49-4490 TCGA-49-4494 TCGA-49-4501 TCGA-49-4506 TCGA-49-4507 
       28.11        12.66        35.54        46.72        32.84         8.81 
TCGA-49-4510 TCGA-49-4512 TCGA-49-6742 TCGA-49-6745 TCGA-50-5044 TCGA-50-5051 
       29.46        29.75        15.02         4.93        20.48        14.96 
TCGA-50-5055 TCGA-50-5066 TCGA-50-5072 TCGA-50-5930 TCGA-50-5931 TCGA-50-5932 
       25.81         9.76         8.05         9.27         8.78        35.87 
TCGA-50-5933 TCGA-50-5935 TCGA-50-5936 TCGA-50-5942 TCGA-50-5944 TCGA-50-5946 
       77.88        21.47         8.45         4.44        12.26        11.47 
TCGA-50-6590 TCGA-50-6591 TCGA-50-6592 TCGA-50-6593 TCGA-50-6594 TCGA-50-6595 
       42.31         3.88        25.51        11.05        12.16         6.21 
TCGA-50-6597 TCGA-55-1592 TCGA-55-1594 TCGA-55-1595 TCGA-55-1596 TCGA-55-6543 
       33.37        23.05        38.73        48.62        45.17         0.07 
TCGA-55-6642 TCGA-55-6712 TCGA-64-1676 TCGA-64-1678 TCGA-64-1680 TCGA-64-5774 
       32.61         0.79        56.81        39.09        37.02        83.84 
TCGA-64-5775 TCGA-64-5778 TCGA-64-5779 TCGA-64-5815 TCGA-67-3770 TCGA-67-3772 
        0.10        30.44        16.67         7.33         0.99         0.59 
TCGA-67-3774 TCGA-67-6215 TCGA-67-6216 TCGA-71-6725 TCGA-73-4658 TCGA-73-4662 
        0.59         0.89         0.69         2.01        52.57        29.95 
TCGA-73-4670 TCGA-73-4675 TCGA-73-4676 TCGA-73-4677 TCGA-91-6828 TCGA-91-6829 
        0.46         1.32         4.01         1.25         1.22        41.33 
TCGA-91-6831 TCGA-91-6835 
        1.28         1.15 

  NAV3 MUTATED NAV3 WILD-TYPE 
          0.36           0.07 
  NAV3 MUTATED NAV3 WILD-TYPE 
         71.47          85.32 
  NAV3 MUTATED NAV3 WILD-TYPE 
         15.12          12.46 
[1] "0.4 - 71.5 (15.1)" "0.1 - 85.3 (12.5)"
    TCGA-05-4249     TCGA-05-4250     TCGA-05-4382     TCGA-05-4384 
"NAV3 WILD-TYPE" "NAV3 WILD-TYPE"   "NAV3 MUTATED"   "NAV3 MUTATED" 
    TCGA-05-4390     TCGA-05-4396     TCGA-05-4397     TCGA-05-4398 
  "NAV3 MUTATED"   "NAV3 MUTATED" "NAV3 WILD-TYPE"   "NAV3 MUTATED" 
    TCGA-05-4402     TCGA-05-4405     TCGA-05-4415     TCGA-05-4417 
"NAV3 WILD-TYPE" "NAV3 WILD-TYPE"   "NAV3 MUTATED" "NAV3 WILD-TYPE" 
    TCGA-05-4418     TCGA-05-4420     TCGA-05-4424     TCGA-05-4426 
"NAV3 WILD-TYPE" "NAV3 WILD-TYPE" "NAV3 WILD-TYPE" "NAV3 WILD-TYPE" 
    TCGA-05-4427     TCGA-05-4430     TCGA-05-4432     TCGA-05-4433 
"NAV3 WILD-TYPE" "NAV3 WILD-TYPE"   "NAV3 MUTATED" "NAV3 WILD-TYPE" 
    TCGA-05-4434     TCGA-05-5420     TCGA-05-5423     TCGA-05-5425 
"NAV3 WILD-TYPE" "NAV3 WILD-TYPE" "NAV3 WILD-TYPE" "NAV3 WILD-TYPE" 
    TCGA-05-5429     TCGA-05-5715     TCGA-35-3615     TCGA-35-4122 
"NAV3 WILD-TYPE" "NAV3 WILD-TYPE" "NAV3 WILD-TYPE"   "NAV3 MUTATED" 
    TCGA-35-4123     TCGA-35-5375     TCGA-38-4625     TCGA-38-4626 
"NAV3 WILD-TYPE" "NAV3 WILD-TYPE" "NAV3 WILD-TYPE" "NAV3 WILD-TYPE" 
    TCGA-38-4627     TCGA-38-4628     TCGA-38-4629     TCGA-38-4630 
"NAV3 WILD-TYPE" "NAV3 WILD-TYPE" "NAV3 WILD-TYPE" "NAV3 WILD-TYPE" 
    TCGA-38-4631     TCGA-38-4632     TCGA-38-6178     TCGA-44-2655 
  "NAV3 MUTATED"   "NAV3 MUTATED" "NAV3 WILD-TYPE" "NAV3 WILD-TYPE" 
    TCGA-44-2656     TCGA-44-2657     TCGA-44-2659     TCGA-44-2661 
"NAV3 WILD-TYPE" "NAV3 WILD-TYPE" "NAV3 WILD-TYPE" "NAV3 WILD-TYPE" 
    TCGA-44-2662     TCGA-44-2665     TCGA-44-2666     TCGA-44-2668 
  "NAV3 MUTATED" "NAV3 WILD-TYPE" "NAV3 WILD-TYPE" "NAV3 WILD-TYPE" 
    TCGA-44-3396     TCGA-44-3398     TCGA-44-3918     TCGA-44-3919 
"NAV3 WILD-TYPE" "NAV3 WILD-TYPE"   "NAV3 MUTATED" "NAV3 WILD-TYPE" 
    TCGA-44-4112     TCGA-44-5643     TCGA-44-5645     TCGA-44-6144 
"NAV3 WILD-TYPE" "NAV3 WILD-TYPE" "NAV3 WILD-TYPE" "NAV3 WILD-TYPE" 
    TCGA-44-6145     TCGA-44-6146     TCGA-44-6147     TCGA-44-6148 
"NAV3 WILD-TYPE" "NAV3 WILD-TYPE" "NAV3 WILD-TYPE" "NAV3 WILD-TYPE" 
    TCGA-44-6774     TCGA-44-6775     TCGA-44-6776     TCGA-44-6777 
  "NAV3 MUTATED" "NAV3 WILD-TYPE" "NAV3 WILD-TYPE" "NAV3 WILD-TYPE" 
    TCGA-44-6778     TCGA-44-6779     TCGA-49-4486     TCGA-49-4487 
"NAV3 WILD-TYPE" "NAV3 WILD-TYPE" "NAV3 WILD-TYPE" "NAV3 WILD-TYPE" 
    TCGA-49-4488     TCGA-49-4490     TCGA-49-4494     TCGA-49-4501 
  "NAV3 MUTATED" "NAV3 WILD-TYPE" "NAV3 WILD-TYPE" "NAV3 WILD-TYPE" 
    TCGA-49-4505     TCGA-49-4506     TCGA-49-4507     TCGA-49-4510 
  "NAV3 MUTATED" "NAV3 WILD-TYPE" "NAV3 WILD-TYPE" "NAV3 WILD-TYPE" 
    TCGA-49-4512     TCGA-49-4514     TCGA-49-6742     TCGA-49-6743 
"NAV3 WILD-TYPE"   "NAV3 MUTATED" "NAV3 WILD-TYPE"   "NAV3 MUTATED" 
    TCGA-49-6744     TCGA-49-6745     TCGA-50-5044     TCGA-50-5045 
  "NAV3 MUTATED" "NAV3 WILD-TYPE" "NAV3 WILD-TYPE"   "NAV3 MUTATED" 
    TCGA-50-5049     TCGA-50-5051     TCGA-50-5055     TCGA-50-5066 
  "NAV3 MUTATED" "NAV3 WILD-TYPE" "NAV3 WILD-TYPE" "NAV3 WILD-TYPE" 
    TCGA-50-5068     TCGA-50-5072     TCGA-50-5930     TCGA-50-5931 
  "NAV3 MUTATED" "NAV3 WILD-TYPE" "NAV3 WILD-TYPE" "NAV3 WILD-TYPE" 
    TCGA-50-5932     TCGA-50-5933     TCGA-50-5935     TCGA-50-5936 
"NAV3 WILD-TYPE" "NAV3 WILD-TYPE" "NAV3 WILD-TYPE" "NAV3 WILD-TYPE" 
    TCGA-50-5939     TCGA-50-5941     TCGA-50-5942     TCGA-50-5944 
  "NAV3 MUTATED"   "NAV3 MUTATED" "NAV3 WILD-TYPE" "NAV3 WILD-TYPE" 
    TCGA-50-5946     TCGA-50-6590     TCGA-50-6591     TCGA-50-6592 
"NAV3 WILD-TYPE" "NAV3 WILD-TYPE" "NAV3 WILD-TYPE" "NAV3 WILD-TYPE" 
    TCGA-50-6593     TCGA-50-6594     TCGA-50-6595     TCGA-50-6597 
"NAV3 WILD-TYPE" "NAV3 WILD-TYPE" "NAV3 WILD-TYPE" "NAV3 WILD-TYPE" 
    TCGA-55-1592     TCGA-55-1594     TCGA-55-1595     TCGA-55-1596 
"NAV3 WILD-TYPE" "NAV3 WILD-TYPE" "NAV3 WILD-TYPE" "NAV3 WILD-TYPE" 
    TCGA-55-5899     TCGA-55-6543     TCGA-55-6642     TCGA-55-6712 
  "NAV3 MUTATED" "NAV3 WILD-TYPE" "NAV3 WILD-TYPE" "NAV3 WILD-TYPE" 
    TCGA-64-1676     TCGA-64-1677     TCGA-64-1678     TCGA-64-1680 
"NAV3 WILD-TYPE"   "NAV3 MUTATED" "NAV3 WILD-TYPE" "NAV3 WILD-TYPE" 
    TCGA-64-5774     TCGA-64-5775     TCGA-64-5778     TCGA-64-5779 
"NAV3 WILD-TYPE" "NAV3 WILD-TYPE" "NAV3 WILD-TYPE" "NAV3 WILD-TYPE" 
    TCGA-64-5781     TCGA-64-5815     TCGA-67-3770     TCGA-67-3771 
  "NAV3 MUTATED" "NAV3 WILD-TYPE" "NAV3 WILD-TYPE"   "NAV3 MUTATED" 
    TCGA-67-3772     TCGA-67-3773     TCGA-67-3774     TCGA-67-6215 
"NAV3 WILD-TYPE"   "NAV3 MUTATED" "NAV3 WILD-TYPE" "NAV3 WILD-TYPE" 
    TCGA-67-6216     TCGA-67-6217     TCGA-71-6725     TCGA-73-4658 
"NAV3 WILD-TYPE"   "NAV3 MUTATED" "NAV3 WILD-TYPE" "NAV3 WILD-TYPE" 
    TCGA-73-4659     TCGA-73-4662     TCGA-73-4666     TCGA-73-4668 
  "NAV3 MUTATED" "NAV3 WILD-TYPE"   "NAV3 MUTATED"   "NAV3 MUTATED" 
    TCGA-73-4670     TCGA-73-4675     TCGA-73-4676     TCGA-73-4677 
"NAV3 WILD-TYPE" "NAV3 WILD-TYPE" "NAV3 WILD-TYPE" "NAV3 WILD-TYPE" 
    TCGA-91-6828     TCGA-91-6829     TCGA-91-6831     TCGA-91-6835 
"NAV3 WILD-TYPE" "NAV3 WILD-TYPE" "NAV3 WILD-TYPE" "NAV3 WILD-TYPE" 
    TCGA-91-6836 
  "NAV3 MUTATED" 
    TCGA-05-4249     TCGA-05-4250     TCGA-05-4382     TCGA-05-4384 
"NAV3 WILD-TYPE" "NAV3 WILD-TYPE"   "NAV3 MUTATED"   "NAV3 MUTATED" 
    TCGA-05-4390     TCGA-05-4396     TCGA-05-4397     TCGA-05-4398 
  "NAV3 MUTATED"   "NAV3 MUTATED" "NAV3 WILD-TYPE"   "NAV3 MUTATED" 
    TCGA-05-4402     TCGA-05-4405     TCGA-05-4415     TCGA-05-4417 
"NAV3 WILD-TYPE" "NAV3 WILD-TYPE"   "NAV3 MUTATED" "NAV3 WILD-TYPE" 
    TCGA-05-4418     TCGA-05-4420     TCGA-05-4424     TCGA-05-4426 
"NAV3 WILD-TYPE" "NAV3 WILD-TYPE" "NAV3 WILD-TYPE" "NAV3 WILD-TYPE" 
    TCGA-05-4427     TCGA-05-4430     TCGA-05-4432     TCGA-05-4433 
"NAV3 WILD-TYPE" "NAV3 WILD-TYPE"   "NAV3 MUTATED" "NAV3 WILD-TYPE" 
    TCGA-05-4434     TCGA-05-5420     TCGA-05-5423     TCGA-05-5425 
"NAV3 WILD-TYPE" "NAV3 WILD-TYPE" "NAV3 WILD-TYPE" "NAV3 WILD-TYPE" 
    TCGA-05-5429     TCGA-05-5715     TCGA-35-3615     TCGA-35-4122 
"NAV3 WILD-TYPE" "NAV3 WILD-TYPE" "NAV3 WILD-TYPE"   "NAV3 MUTATED" 
    TCGA-35-4123     TCGA-35-5375     TCGA-38-4625     TCGA-38-4626 
"NAV3 WILD-TYPE" "NAV3 WILD-TYPE" "NAV3 WILD-TYPE" "NAV3 WILD-TYPE" 
    TCGA-38-4627     TCGA-38-4628     TCGA-38-4629     TCGA-38-4630 
"NAV3 WILD-TYPE" "NAV3 WILD-TYPE" "NAV3 WILD-TYPE" "NAV3 WILD-TYPE" 
    TCGA-38-4631     TCGA-38-4632     TCGA-38-6178     TCGA-44-2655 
  "NAV3 MUTATED"   "NAV3 MUTATED" "NAV3 WILD-TYPE" "NAV3 WILD-TYPE" 
    TCGA-44-2656     TCGA-44-2657     TCGA-44-2659     TCGA-44-2661 
"NAV3 WILD-TYPE" "NAV3 WILD-TYPE" "NAV3 WILD-TYPE" "NAV3 WILD-TYPE" 
    TCGA-44-2662     TCGA-44-2665     TCGA-44-2666     TCGA-44-2668 
  "NAV3 MUTATED" "NAV3 WILD-TYPE" "NAV3 WILD-TYPE" "NAV3 WILD-TYPE" 
    TCGA-44-3396     TCGA-44-3398     TCGA-44-3918     TCGA-44-3919 
"NAV3 WILD-TYPE" "NAV3 WILD-TYPE"   "NAV3 MUTATED" "NAV3 WILD-TYPE" 
    TCGA-44-4112     TCGA-44-5643     TCGA-44-5645     TCGA-44-6144 
"NAV3 WILD-TYPE" "NAV3 WILD-TYPE" "NAV3 WILD-TYPE" "NAV3 WILD-TYPE" 
    TCGA-44-6145     TCGA-44-6146     TCGA-44-6147     TCGA-44-6148 
"NAV3 WILD-TYPE" "NAV3 WILD-TYPE" "NAV3 WILD-TYPE" "NAV3 WILD-TYPE" 
    TCGA-44-6774     TCGA-44-6775     TCGA-44-6776     TCGA-44-6777 
  "NAV3 MUTATED" "NAV3 WILD-TYPE" "NAV3 WILD-TYPE" "NAV3 WILD-TYPE" 
    TCGA-44-6778     TCGA-44-6779     TCGA-49-4486     TCGA-49-4487 
"NAV3 WILD-TYPE" "NAV3 WILD-TYPE" "NAV3 WILD-TYPE" "NAV3 WILD-TYPE" 
    TCGA-49-4488     TCGA-49-4490     TCGA-49-4494     TCGA-49-4501 
  "NAV3 MUTATED" "NAV3 WILD-TYPE" "NAV3 WILD-TYPE" "NAV3 WILD-TYPE" 
    TCGA-49-4505     TCGA-49-4506     TCGA-49-4507     TCGA-49-4510 
  "NAV3 MUTATED" "NAV3 WILD-TYPE" "NAV3 WILD-TYPE" "NAV3 WILD-TYPE" 
    TCGA-49-4512     TCGA-49-4514     TCGA-49-6742     TCGA-49-6743 
"NAV3 WILD-TYPE"   "NAV3 MUTATED" "NAV3 WILD-TYPE"   "NAV3 MUTATED" 
    TCGA-49-6744     TCGA-49-6745     TCGA-50-5044     TCGA-50-5045 
  "NAV3 MUTATED" "NAV3 WILD-TYPE" "NAV3 WILD-TYPE"   "NAV3 MUTATED" 
    TCGA-50-5049     TCGA-50-5051     TCGA-50-5055     TCGA-50-5066 
  "NAV3 MUTATED" "NAV3 WILD-TYPE" "NAV3 WILD-TYPE" "NAV3 WILD-TYPE" 
    TCGA-50-5068     TCGA-50-5072     TCGA-50-5930     TCGA-50-5931 
  "NAV3 MUTATED" "NAV3 WILD-TYPE" "NAV3 WILD-TYPE" "NAV3 WILD-TYPE" 
    TCGA-50-5932     TCGA-50-5933     TCGA-50-5935     TCGA-50-5936 
"NAV3 WILD-TYPE" "NAV3 WILD-TYPE" "NAV3 WILD-TYPE" "NAV3 WILD-TYPE" 
    TCGA-50-5939     TCGA-50-5941     TCGA-50-5942     TCGA-50-5944 
  "NAV3 MUTATED"   "NAV3 MUTATED" "NAV3 WILD-TYPE" "NAV3 WILD-TYPE" 
    TCGA-50-5946     TCGA-50-6590     TCGA-50-6591     TCGA-50-6592 
"NAV3 WILD-TYPE" "NAV3 WILD-TYPE" "NAV3 WILD-TYPE" "NAV3 WILD-TYPE" 
    TCGA-50-6593     TCGA-50-6594     TCGA-50-6595     TCGA-50-6597 
"NAV3 WILD-TYPE" "NAV3 WILD-TYPE" "NAV3 WILD-TYPE" "NAV3 WILD-TYPE" 
    TCGA-55-1592     TCGA-55-1594     TCGA-55-1595     TCGA-55-1596 
"NAV3 WILD-TYPE" "NAV3 WILD-TYPE" "NAV3 WILD-TYPE" "NAV3 WILD-TYPE" 
    TCGA-55-5899     TCGA-55-6543     TCGA-55-6642     TCGA-55-6712 
  "NAV3 MUTATED" "NAV3 WILD-TYPE" "NAV3 WILD-TYPE" "NAV3 WILD-TYPE" 
    TCGA-64-1676     TCGA-64-1677     TCGA-64-1678     TCGA-64-1680 
"NAV3 WILD-TYPE"   "NAV3 MUTATED" "NAV3 WILD-TYPE" "NAV3 WILD-TYPE" 
    TCGA-64-5774     TCGA-64-5775     TCGA-64-5778     TCGA-64-5779 
"NAV3 WILD-TYPE" "NAV3 WILD-TYPE" "NAV3 WILD-TYPE" "NAV3 WILD-TYPE" 
    TCGA-64-5781     TCGA-64-5815     TCGA-67-3770     TCGA-67-3771 
  "NAV3 MUTATED" "NAV3 WILD-TYPE" "NAV3 WILD-TYPE"   "NAV3 MUTATED" 
    TCGA-67-3772     TCGA-67-3773     TCGA-67-3774     TCGA-67-6215 
"NAV3 WILD-TYPE"   "NAV3 MUTATED" "NAV3 WILD-TYPE" "NAV3 WILD-TYPE" 
    TCGA-67-6216     TCGA-67-6217     TCGA-71-6725     TCGA-73-4658 
"NAV3 WILD-TYPE"   "NAV3 MUTATED" "NAV3 WILD-TYPE" "NAV3 WILD-TYPE" 
    TCGA-73-4659     TCGA-73-4662     TCGA-73-4666     TCGA-73-4668 
  "NAV3 MUTATED" "NAV3 WILD-TYPE"   "NAV3 MUTATED"   "NAV3 MUTATED" 
    TCGA-73-4670     TCGA-73-4675     TCGA-73-4676     TCGA-73-4677 
"NAV3 WILD-TYPE" "NAV3 WILD-TYPE" "NAV3 WILD-TYPE" "NAV3 WILD-TYPE" 
    TCGA-91-6828     TCGA-91-6829     TCGA-91-6831     TCGA-91-6835 
"NAV3 WILD-TYPE" "NAV3 WILD-TYPE" "NAV3 WILD-TYPE" "NAV3 WILD-TYPE" 
    TCGA-91-6836 
  "NAV3 MUTATED" 
    TCGA-05-4249     TCGA-05-4250     TCGA-05-4382     TCGA-05-4384 
"NAV3 WILD-TYPE" "NAV3 WILD-TYPE"   "NAV3 MUTATED"   "NAV3 MUTATED" 
    TCGA-05-4390     TCGA-05-4396     TCGA-05-4397     TCGA-05-4398 
  "NAV3 MUTATED"   "NAV3 MUTATED" "NAV3 WILD-TYPE"   "NAV3 MUTATED" 
    TCGA-05-4402     TCGA-05-4405     TCGA-05-4415     TCGA-05-4417 
"NAV3 WILD-TYPE" "NAV3 WILD-TYPE"   "NAV3 MUTATED" "NAV3 WILD-TYPE" 
    TCGA-05-4418     TCGA-05-4420     TCGA-05-4424     TCGA-05-4426 
"NAV3 WILD-TYPE" "NAV3 WILD-TYPE" "NAV3 WILD-TYPE" "NAV3 WILD-TYPE" 
    TCGA-05-4427     TCGA-05-4430     TCGA-05-4432     TCGA-05-4433 
"NAV3 WILD-TYPE" "NAV3 WILD-TYPE"   "NAV3 MUTATED" "NAV3 WILD-TYPE" 
    TCGA-05-4434     TCGA-05-5420     TCGA-05-5423     TCGA-05-5425 
"NAV3 WILD-TYPE" "NAV3 WILD-TYPE" "NAV3 WILD-TYPE" "NAV3 WILD-TYPE" 
    TCGA-05-5429     TCGA-05-5715     TCGA-35-3615     TCGA-35-4122 
"NAV3 WILD-TYPE" "NAV3 WILD-TYPE" "NAV3 WILD-TYPE"   "NAV3 MUTATED" 
    TCGA-35-4123     TCGA-35-5375     TCGA-38-4625     TCGA-38-4626 
"NAV3 WILD-TYPE" "NAV3 WILD-TYPE" "NAV3 WILD-TYPE" "NAV3 WILD-TYPE" 
    TCGA-38-4627     TCGA-38-4628     TCGA-38-4629     TCGA-38-4630 
"NAV3 WILD-TYPE" "NAV3 WILD-TYPE" "NAV3 WILD-TYPE" "NAV3 WILD-TYPE" 
    TCGA-38-4631     TCGA-38-4632     TCGA-38-6178     TCGA-44-2655 
  "NAV3 MUTATED"   "NAV3 MUTATED" "NAV3 WILD-TYPE" "NAV3 WILD-TYPE" 
    TCGA-44-2656     TCGA-44-2657     TCGA-44-2659     TCGA-44-2661 
"NAV3 WILD-TYPE" "NAV3 WILD-TYPE" "NAV3 WILD-TYPE" "NAV3 WILD-TYPE" 
    TCGA-44-2662     TCGA-44-2665     TCGA-44-2666     TCGA-44-2668 
  "NAV3 MUTATED" "NAV3 WILD-TYPE" "NAV3 WILD-TYPE" "NAV3 WILD-TYPE" 
    TCGA-44-3396     TCGA-44-3398     TCGA-44-3918     TCGA-44-3919 
"NAV3 WILD-TYPE" "NAV3 WILD-TYPE"   "NAV3 MUTATED" "NAV3 WILD-TYPE" 
    TCGA-44-4112     TCGA-44-5643     TCGA-44-5645     TCGA-44-6144 
"NAV3 WILD-TYPE" "NAV3 WILD-TYPE" "NAV3 WILD-TYPE" "NAV3 WILD-TYPE" 
    TCGA-44-6145     TCGA-44-6146     TCGA-44-6147     TCGA-44-6148 
"NAV3 WILD-TYPE" "NAV3 WILD-TYPE" "NAV3 WILD-TYPE" "NAV3 WILD-TYPE" 
    TCGA-44-6774     TCGA-44-6775     TCGA-44-6776     TCGA-44-6777 
  "NAV3 MUTATED" "NAV3 WILD-TYPE" "NAV3 WILD-TYPE" "NAV3 WILD-TYPE" 
    TCGA-44-6778     TCGA-44-6779     TCGA-49-4486     TCGA-49-4487 
"NAV3 WILD-TYPE" "NAV3 WILD-TYPE" "NAV3 WILD-TYPE" "NAV3 WILD-TYPE" 
    TCGA-49-4488     TCGA-49-4490     TCGA-49-4494     TCGA-49-4501 
  "NAV3 MUTATED" "NAV3 WILD-TYPE" "NAV3 WILD-TYPE" "NAV3 WILD-TYPE" 
    TCGA-49-4505     TCGA-49-4506     TCGA-49-4507     TCGA-49-4510 
  "NAV3 MUTATED" "NAV3 WILD-TYPE" "NAV3 WILD-TYPE" "NAV3 WILD-TYPE" 
    TCGA-49-4512     TCGA-49-4514     TCGA-49-6742     TCGA-49-6743 
"NAV3 WILD-TYPE"   "NAV3 MUTATED" "NAV3 WILD-TYPE"   "NAV3 MUTATED" 
    TCGA-49-6744     TCGA-49-6745     TCGA-50-5044     TCGA-50-5045 
  "NAV3 MUTATED" "NAV3 WILD-TYPE" "NAV3 WILD-TYPE"   "NAV3 MUTATED" 
    TCGA-50-5049     TCGA-50-5051     TCGA-50-5055     TCGA-50-5066 
  "NAV3 MUTATED" "NAV3 WILD-TYPE" "NAV3 WILD-TYPE" "NAV3 WILD-TYPE" 
    TCGA-50-5068     TCGA-50-5072     TCGA-50-5930     TCGA-50-5931 
  "NAV3 MUTATED" "NAV3 WILD-TYPE" "NAV3 WILD-TYPE" "NAV3 WILD-TYPE" 
    TCGA-50-5932     TCGA-50-5933     TCGA-50-5935     TCGA-50-5936 
"NAV3 WILD-TYPE" "NAV3 WILD-TYPE" "NAV3 WILD-TYPE" "NAV3 WILD-TYPE" 
    TCGA-50-5939     TCGA-50-5941     TCGA-50-5942     TCGA-50-5944 
  "NAV3 MUTATED"   "NAV3 MUTATED" "NAV3 WILD-TYPE" "NAV3 WILD-TYPE" 
    TCGA-50-5946     TCGA-50-6590     TCGA-50-6591     TCGA-50-6592 
"NAV3 WILD-TYPE" "NAV3 WILD-TYPE" "NAV3 WILD-TYPE" "NAV3 WILD-TYPE" 
    TCGA-50-6593     TCGA-50-6594     TCGA-50-6595     TCGA-50-6597 
"NAV3 WILD-TYPE" "NAV3 WILD-TYPE" "NAV3 WILD-TYPE" "NAV3 WILD-TYPE" 
    TCGA-55-1592     TCGA-55-1594     TCGA-55-1595     TCGA-55-1596 
"NAV3 WILD-TYPE" "NAV3 WILD-TYPE" "NAV3 WILD-TYPE" "NAV3 WILD-TYPE" 
    TCGA-55-5899     TCGA-55-6543     TCGA-55-6642     TCGA-55-6712 
  "NAV3 MUTATED" "NAV3 WILD-TYPE" "NAV3 WILD-TYPE" "NAV3 WILD-TYPE" 
    TCGA-64-1676     TCGA-64-1677     TCGA-64-1678     TCGA-64-1680 
"NAV3 WILD-TYPE"   "NAV3 MUTATED" "NAV3 WILD-TYPE" "NAV3 WILD-TYPE" 
    TCGA-64-5774     TCGA-64-5775     TCGA-64-5778     TCGA-64-5779 
"NAV3 WILD-TYPE" "NAV3 WILD-TYPE" "NAV3 WILD-TYPE" "NAV3 WILD-TYPE" 
    TCGA-64-5781     TCGA-64-5815     TCGA-67-3770     TCGA-67-3771 
  "NAV3 MUTATED" "NAV3 WILD-TYPE" "NAV3 WILD-TYPE"   "NAV3 MUTATED" 
    TCGA-67-3772     TCGA-67-3773     TCGA-67-3774     TCGA-67-6215 
"NAV3 WILD-TYPE"   "NAV3 MUTATED" "NAV3 WILD-TYPE" "NAV3 WILD-TYPE" 
    TCGA-67-6216     TCGA-67-6217     TCGA-71-6725     TCGA-73-4658 
"NAV3 WILD-TYPE"   "NAV3 MUTATED" "NAV3 WILD-TYPE" "NAV3 WILD-TYPE" 
    TCGA-73-4659     TCGA-73-4662     TCGA-73-4666     TCGA-73-4668 
  "NAV3 MUTATED" "NAV3 WILD-TYPE"   "NAV3 MUTATED"   "NAV3 MUTATED" 
    TCGA-73-4670     TCGA-73-4675     TCGA-73-4676     TCGA-73-4677 
"NAV3 WILD-TYPE" "NAV3 WILD-TYPE" "NAV3 WILD-TYPE" "NAV3 WILD-TYPE" 
    TCGA-91-6828     TCGA-91-6829     TCGA-91-6831     TCGA-91-6835 
"NAV3 WILD-TYPE" "NAV3 WILD-TYPE" "NAV3 WILD-TYPE" "NAV3 WILD-TYPE" 
    TCGA-91-6836 
  "NAV3 MUTATED" 
[1] "hr=" "1.1"
D5V2, continuous
D5V3, binary
[1] "tbl2"
                cls
clus             [,1] [,2]
  NAV3 MUTATED     22   13
  NAV3 WILD-TYPE   71   66
        clus
vv       NAV3 MUTATED NAV3 WILD-TYPE
  FEMALE           22             71
  MALE             13             66
D5V4, continuous
D5V5, multiclass
D5V6, multiclass
    clus
vv   NAV3 MUTATED NAV3 WILD-TYPE
  T1           10             31
  T2           21             87
  T3            1             13
  T4            3              5
D5V7, multiclass
       clus
vv      NAV3 MUTATED NAV3 WILD-TYPE
  N0              17             78
  N1              10             27
  N2+N3            8             27
D5V8, multiclass
    clus
vv   NAV3 MUTATED NAV3 WILD-TYPE
  M0           27            110
  M1            2              7
  MX            6             16
D5V9, multiclass
     clus
vv    NAV3 MUTATED NAV3 WILD-TYPE
  I             17             71
  II             7             26
  III            9             30
  IV             2              7
D5V10, binary
[1] "tbl2"
                cls
clus             [,1] [,2]
  NAV3 MUTATED      3   32
  NAV3 WILD-TYPE   13  124
     clus
vv    NAV3 MUTATED NAV3 WILD-TYPE
  NO             3             13
  YES           32            124
D5V11, continuous
D5V12, continuous
D5V13, multiclass
                                             clus
vv                                            NAV3 MUTATED NAV3 WILD-TYPE
  CURRENT REFORMED SMOKER FOR < OR = 15 YEARS           13             49
  CURRENT REFORMED SMOKER FOR > 15 YEARS                11             35
  CURRENT SMOKER                                         8             20
  LIFELONG NON-SMOKER                                    0             24
D5V14, continuous

Clustering(6) Variable = MAGEC1 MUTATION ANALYSIS
D6V1, survival
                  sevent
clus2               0  1
  MAGEC1 MUTATED   12  8
  MAGEC1 WILD-TYPE 87 42
  MAGEC1 MUTATED MAGEC1 WILD-TYPE 
              20              129 
  MAGEC1 MUTATED MAGEC1 WILD-TYPE 
               8               42 
$`MAGEC1 MUTATED`
TCGA-05-4382 TCGA-05-4396 TCGA-05-4427 TCGA-05-4430 TCGA-05-4432 TCGA-38-4626 
       19.92         9.96        26.01        25.02        25.02        85.32 
TCGA-38-4631 TCGA-38-4632 TCGA-44-2656 TCGA-44-2659 TCGA-50-5051 TCGA-50-5932 
       11.64        44.61        19.10        17.39        14.96        35.87 
TCGA-50-5941 TCGA-50-6590 TCGA-50-6593 TCGA-50-6594 TCGA-64-1677 TCGA-64-5778 
        9.37        42.31        11.05        12.16        20.65        30.44 
TCGA-64-5815 TCGA-67-6217 
        7.33        13.87 

$`MAGEC1 WILD-TYPE`
TCGA-05-4249 TCGA-05-4250 TCGA-05-4384 TCGA-05-4390 TCGA-05-4397 TCGA-05-4398 
       38.07         3.98        14.01        37.02        24.03        47.05 
TCGA-05-4402 TCGA-05-4405 TCGA-05-4415 TCGA-05-4417 TCGA-05-4418 TCGA-05-4420 
        8.02        20.05         2.96        14.93         8.98        29.95 
TCGA-05-4424 TCGA-05-4426 TCGA-05-4433 TCGA-05-4434 TCGA-05-5420 TCGA-05-5423 
       30.02        26.01        24.00        15.02         1.02         4.96 
TCGA-05-5425 TCGA-05-5429 TCGA-05-5715 TCGA-35-3615 TCGA-35-4122 TCGA-35-4123 
        2.96         0.99         2.04         0.46         7.36         5.95 
TCGA-35-5375 TCGA-38-4625 TCGA-38-4627 TCGA-38-4628 TCGA-38-4629 TCGA-38-4630 
        8.68        47.61        37.71        49.02        28.37        35.28 
TCGA-38-6178 TCGA-44-2655 TCGA-44-2657 TCGA-44-2661 TCGA-44-2662 TCGA-44-2665 
        5.19        18.87        13.15         3.39        15.78        13.15 
TCGA-44-2666 TCGA-44-2668 TCGA-44-3396 TCGA-44-3398 TCGA-44-3918 TCGA-44-3919 
        3.19         8.09        10.22         8.32         6.44         6.21 
TCGA-44-4112 TCGA-44-5643 TCGA-44-5645 TCGA-44-6144 TCGA-44-6145 TCGA-44-6146 
        4.60         3.48         6.84         0.30         3.35         9.93 
TCGA-44-6147 TCGA-44-6148 TCGA-44-6774 TCGA-44-6775 TCGA-44-6776 TCGA-44-6777 
        7.76         3.12         5.42         2.70        63.72        32.45 
TCGA-44-6778 TCGA-44-6779 TCGA-49-4486 TCGA-49-4487 TCGA-49-4488 TCGA-49-4490 
       36.49        16.41        76.21        28.11        28.57        12.66 
TCGA-49-4494 TCGA-49-4501 TCGA-49-4505 TCGA-49-4506 TCGA-49-4507 TCGA-49-4510 
       35.54        46.72        14.07        32.84         8.81        29.46 
TCGA-49-4512 TCGA-49-4514 TCGA-49-6742 TCGA-49-6743 TCGA-49-6744 TCGA-49-6745 
       29.75        43.20        15.02        12.13        12.99         4.93 
TCGA-50-5044 TCGA-50-5045 TCGA-50-5049 TCGA-50-5055 TCGA-50-5066 TCGA-50-5068 
       20.48        71.47        48.82        25.81         9.76        49.28 
TCGA-50-5072 TCGA-50-5930 TCGA-50-5931 TCGA-50-5933 TCGA-50-5935 TCGA-50-5936 
        8.05         9.27         8.78        77.88        21.47         8.45 
TCGA-50-5939 TCGA-50-5942 TCGA-50-5944 TCGA-50-5946 TCGA-50-6591 TCGA-50-6592 
       15.12         4.44        12.26        11.47         3.88        25.51 
TCGA-50-6595 TCGA-50-6597 TCGA-55-1592 TCGA-55-1594 TCGA-55-1595 TCGA-55-1596 
        6.21        33.37        23.05        38.73        48.62        45.17 
TCGA-55-5899 TCGA-55-6543 TCGA-55-6642 TCGA-55-6712 TCGA-64-1676 TCGA-64-1678 
        2.86         0.07        32.61         0.79        56.81        39.09 
TCGA-64-1680 TCGA-64-5774 TCGA-64-5775 TCGA-64-5779 TCGA-64-5781 TCGA-67-3770 
       37.02        83.84         0.10        16.67        39.52         0.99 
TCGA-67-3771 TCGA-67-3772 TCGA-67-3773 TCGA-67-3774 TCGA-67-6215 TCGA-67-6216 
        1.97         0.59         2.04         0.59         0.89         0.69 
TCGA-71-6725 TCGA-73-4658 TCGA-73-4659 TCGA-73-4662 TCGA-73-4666 TCGA-73-4668 
        2.01        52.57        23.38        29.95        20.28        15.35 
TCGA-73-4670 TCGA-73-4675 TCGA-73-4676 TCGA-73-4677 TCGA-91-6828 TCGA-91-6829 
        0.46         1.32         4.01         1.25         1.22        41.33 
TCGA-91-6831 TCGA-91-6835 TCGA-91-6836 
        1.28         1.15         0.36 

  MAGEC1 MUTATED MAGEC1 WILD-TYPE 
            7.33             0.07 
  MAGEC1 MUTATED MAGEC1 WILD-TYPE 
           85.32            83.84 
  MAGEC1 MUTATED MAGEC1 WILD-TYPE 
           19.51            12.66 
[1] "7.3 - 85.3 (19.5)" "0.1 - 83.8 (12.7)"
      TCGA-05-4249       TCGA-05-4250       TCGA-05-4382       TCGA-05-4384 
"MAGEC1 WILD-TYPE" "MAGEC1 WILD-TYPE"   "MAGEC1 MUTATED" "MAGEC1 WILD-TYPE" 
      TCGA-05-4390       TCGA-05-4396       TCGA-05-4397       TCGA-05-4398 
"MAGEC1 WILD-TYPE"   "MAGEC1 MUTATED" "MAGEC1 WILD-TYPE" "MAGEC1 WILD-TYPE" 
      TCGA-05-4402       TCGA-05-4405       TCGA-05-4415       TCGA-05-4417 
"MAGEC1 WILD-TYPE" "MAGEC1 WILD-TYPE" "MAGEC1 WILD-TYPE" "MAGEC1 WILD-TYPE" 
      TCGA-05-4418       TCGA-05-4420       TCGA-05-4424       TCGA-05-4426 
"MAGEC1 WILD-TYPE" "MAGEC1 WILD-TYPE" "MAGEC1 WILD-TYPE" "MAGEC1 WILD-TYPE" 
      TCGA-05-4427       TCGA-05-4430       TCGA-05-4432       TCGA-05-4433 
  "MAGEC1 MUTATED"   "MAGEC1 MUTATED"   "MAGEC1 MUTATED" "MAGEC1 WILD-TYPE" 
      TCGA-05-4434       TCGA-05-5420       TCGA-05-5423       TCGA-05-5425 
"MAGEC1 WILD-TYPE" "MAGEC1 WILD-TYPE" "MAGEC1 WILD-TYPE" "MAGEC1 WILD-TYPE" 
      TCGA-05-5429       TCGA-05-5715       TCGA-35-3615       TCGA-35-4122 
"MAGEC1 WILD-TYPE" "MAGEC1 WILD-TYPE" "MAGEC1 WILD-TYPE" "MAGEC1 WILD-TYPE" 
      TCGA-35-4123       TCGA-35-5375       TCGA-38-4625       TCGA-38-4626 
"MAGEC1 WILD-TYPE" "MAGEC1 WILD-TYPE" "MAGEC1 WILD-TYPE"   "MAGEC1 MUTATED" 
      TCGA-38-4627       TCGA-38-4628       TCGA-38-4629       TCGA-38-4630 
"MAGEC1 WILD-TYPE" "MAGEC1 WILD-TYPE" "MAGEC1 WILD-TYPE" "MAGEC1 WILD-TYPE" 
      TCGA-38-4631       TCGA-38-4632       TCGA-38-6178       TCGA-44-2655 
  "MAGEC1 MUTATED"   "MAGEC1 MUTATED" "MAGEC1 WILD-TYPE" "MAGEC1 WILD-TYPE" 
      TCGA-44-2656       TCGA-44-2657       TCGA-44-2659       TCGA-44-2661 
  "MAGEC1 MUTATED" "MAGEC1 WILD-TYPE"   "MAGEC1 MUTATED" "MAGEC1 WILD-TYPE" 
      TCGA-44-2662       TCGA-44-2665       TCGA-44-2666       TCGA-44-2668 
"MAGEC1 WILD-TYPE" "MAGEC1 WILD-TYPE" "MAGEC1 WILD-TYPE" "MAGEC1 WILD-TYPE" 
      TCGA-44-3396       TCGA-44-3398       TCGA-44-3918       TCGA-44-3919 
"MAGEC1 WILD-TYPE" "MAGEC1 WILD-TYPE" "MAGEC1 WILD-TYPE" "MAGEC1 WILD-TYPE" 
      TCGA-44-4112       TCGA-44-5643       TCGA-44-5645       TCGA-44-6144 
"MAGEC1 WILD-TYPE" "MAGEC1 WILD-TYPE" "MAGEC1 WILD-TYPE" "MAGEC1 WILD-TYPE" 
      TCGA-44-6145       TCGA-44-6146       TCGA-44-6147       TCGA-44-6148 
"MAGEC1 WILD-TYPE" "MAGEC1 WILD-TYPE" "MAGEC1 WILD-TYPE" "MAGEC1 WILD-TYPE" 
      TCGA-44-6774       TCGA-44-6775       TCGA-44-6776       TCGA-44-6777 
"MAGEC1 WILD-TYPE" "MAGEC1 WILD-TYPE" "MAGEC1 WILD-TYPE" "MAGEC1 WILD-TYPE" 
      TCGA-44-6778       TCGA-44-6779       TCGA-49-4486       TCGA-49-4487 
"MAGEC1 WILD-TYPE" "MAGEC1 WILD-TYPE" "MAGEC1 WILD-TYPE" "MAGEC1 WILD-TYPE" 
      TCGA-49-4488       TCGA-49-4490       TCGA-49-4494       TCGA-49-4501 
"MAGEC1 WILD-TYPE" "MAGEC1 WILD-TYPE" "MAGEC1 WILD-TYPE" "MAGEC1 WILD-TYPE" 
      TCGA-49-4505       TCGA-49-4506       TCGA-49-4507       TCGA-49-4510 
"MAGEC1 WILD-TYPE" "MAGEC1 WILD-TYPE" "MAGEC1 WILD-TYPE" "MAGEC1 WILD-TYPE" 
      TCGA-49-4512       TCGA-49-4514       TCGA-49-6742       TCGA-49-6743 
"MAGEC1 WILD-TYPE" "MAGEC1 WILD-TYPE" "MAGEC1 WILD-TYPE" "MAGEC1 WILD-TYPE" 
      TCGA-49-6744       TCGA-49-6745       TCGA-50-5044       TCGA-50-5045 
"MAGEC1 WILD-TYPE" "MAGEC1 WILD-TYPE" "MAGEC1 WILD-TYPE" "MAGEC1 WILD-TYPE" 
      TCGA-50-5049       TCGA-50-5051       TCGA-50-5055       TCGA-50-5066 
"MAGEC1 WILD-TYPE"   "MAGEC1 MUTATED" "MAGEC1 WILD-TYPE" "MAGEC1 WILD-TYPE" 
      TCGA-50-5068       TCGA-50-5072       TCGA-50-5930       TCGA-50-5931 
"MAGEC1 WILD-TYPE" "MAGEC1 WILD-TYPE" "MAGEC1 WILD-TYPE" "MAGEC1 WILD-TYPE" 
      TCGA-50-5932       TCGA-50-5933       TCGA-50-5935       TCGA-50-5936 
  "MAGEC1 MUTATED" "MAGEC1 WILD-TYPE" "MAGEC1 WILD-TYPE" "MAGEC1 WILD-TYPE" 
      TCGA-50-5939       TCGA-50-5941       TCGA-50-5942       TCGA-50-5944 
"MAGEC1 WILD-TYPE"   "MAGEC1 MUTATED" "MAGEC1 WILD-TYPE" "MAGEC1 WILD-TYPE" 
      TCGA-50-5946       TCGA-50-6590       TCGA-50-6591       TCGA-50-6592 
"MAGEC1 WILD-TYPE"   "MAGEC1 MUTATED" "MAGEC1 WILD-TYPE" "MAGEC1 WILD-TYPE" 
      TCGA-50-6593       TCGA-50-6594       TCGA-50-6595       TCGA-50-6597 
  "MAGEC1 MUTATED"   "MAGEC1 MUTATED" "MAGEC1 WILD-TYPE" "MAGEC1 WILD-TYPE" 
      TCGA-55-1592       TCGA-55-1594       TCGA-55-1595       TCGA-55-1596 
"MAGEC1 WILD-TYPE" "MAGEC1 WILD-TYPE" "MAGEC1 WILD-TYPE" "MAGEC1 WILD-TYPE" 
      TCGA-55-5899       TCGA-55-6543       TCGA-55-6642       TCGA-55-6712 
"MAGEC1 WILD-TYPE" "MAGEC1 WILD-TYPE" "MAGEC1 WILD-TYPE" "MAGEC1 WILD-TYPE" 
      TCGA-64-1676       TCGA-64-1677       TCGA-64-1678       TCGA-64-1680 
"MAGEC1 WILD-TYPE"   "MAGEC1 MUTATED" "MAGEC1 WILD-TYPE" "MAGEC1 WILD-TYPE" 
      TCGA-64-5774       TCGA-64-5775       TCGA-64-5778       TCGA-64-5779 
"MAGEC1 WILD-TYPE" "MAGEC1 WILD-TYPE"   "MAGEC1 MUTATED" "MAGEC1 WILD-TYPE" 
      TCGA-64-5781       TCGA-64-5815       TCGA-67-3770       TCGA-67-3771 
"MAGEC1 WILD-TYPE"   "MAGEC1 MUTATED" "MAGEC1 WILD-TYPE" "MAGEC1 WILD-TYPE" 
      TCGA-67-3772       TCGA-67-3773       TCGA-67-3774       TCGA-67-6215 
"MAGEC1 WILD-TYPE" "MAGEC1 WILD-TYPE" "MAGEC1 WILD-TYPE" "MAGEC1 WILD-TYPE" 
      TCGA-67-6216       TCGA-67-6217       TCGA-71-6725       TCGA-73-4658 
"MAGEC1 WILD-TYPE"   "MAGEC1 MUTATED" "MAGEC1 WILD-TYPE" "MAGEC1 WILD-TYPE" 
      TCGA-73-4659       TCGA-73-4662       TCGA-73-4666       TCGA-73-4668 
"MAGEC1 WILD-TYPE" "MAGEC1 WILD-TYPE" "MAGEC1 WILD-TYPE" "MAGEC1 WILD-TYPE" 
      TCGA-73-4670       TCGA-73-4675       TCGA-73-4676       TCGA-73-4677 
"MAGEC1 WILD-TYPE" "MAGEC1 WILD-TYPE" "MAGEC1 WILD-TYPE" "MAGEC1 WILD-TYPE" 
      TCGA-91-6828       TCGA-91-6829       TCGA-91-6831       TCGA-91-6835 
"MAGEC1 WILD-TYPE" "MAGEC1 WILD-TYPE" "MAGEC1 WILD-TYPE" "MAGEC1 WILD-TYPE" 
      TCGA-91-6836 
"MAGEC1 WILD-TYPE" 
      TCGA-05-4249       TCGA-05-4250       TCGA-05-4382       TCGA-05-4384 
"MAGEC1 WILD-TYPE" "MAGEC1 WILD-TYPE"   "MAGEC1 MUTATED" "MAGEC1 WILD-TYPE" 
      TCGA-05-4390       TCGA-05-4396       TCGA-05-4397       TCGA-05-4398 
"MAGEC1 WILD-TYPE"   "MAGEC1 MUTATED" "MAGEC1 WILD-TYPE" "MAGEC1 WILD-TYPE" 
      TCGA-05-4402       TCGA-05-4405       TCGA-05-4415       TCGA-05-4417 
"MAGEC1 WILD-TYPE" "MAGEC1 WILD-TYPE" "MAGEC1 WILD-TYPE" "MAGEC1 WILD-TYPE" 
      TCGA-05-4418       TCGA-05-4420       TCGA-05-4424       TCGA-05-4426 
"MAGEC1 WILD-TYPE" "MAGEC1 WILD-TYPE" "MAGEC1 WILD-TYPE" "MAGEC1 WILD-TYPE" 
      TCGA-05-4427       TCGA-05-4430       TCGA-05-4432       TCGA-05-4433 
  "MAGEC1 MUTATED"   "MAGEC1 MUTATED"   "MAGEC1 MUTATED" "MAGEC1 WILD-TYPE" 
      TCGA-05-4434       TCGA-05-5420       TCGA-05-5423       TCGA-05-5425 
"MAGEC1 WILD-TYPE" "MAGEC1 WILD-TYPE" "MAGEC1 WILD-TYPE" "MAGEC1 WILD-TYPE" 
      TCGA-05-5429       TCGA-05-5715       TCGA-35-3615       TCGA-35-4122 
"MAGEC1 WILD-TYPE" "MAGEC1 WILD-TYPE" "MAGEC1 WILD-TYPE" "MAGEC1 WILD-TYPE" 
      TCGA-35-4123       TCGA-35-5375       TCGA-38-4625       TCGA-38-4626 
"MAGEC1 WILD-TYPE" "MAGEC1 WILD-TYPE" "MAGEC1 WILD-TYPE"   "MAGEC1 MUTATED" 
      TCGA-38-4627       TCGA-38-4628       TCGA-38-4629       TCGA-38-4630 
"MAGEC1 WILD-TYPE" "MAGEC1 WILD-TYPE" "MAGEC1 WILD-TYPE" "MAGEC1 WILD-TYPE" 
      TCGA-38-4631       TCGA-38-4632       TCGA-38-6178       TCGA-44-2655 
  "MAGEC1 MUTATED"   "MAGEC1 MUTATED" "MAGEC1 WILD-TYPE" "MAGEC1 WILD-TYPE" 
      TCGA-44-2656       TCGA-44-2657       TCGA-44-2659       TCGA-44-2661 
  "MAGEC1 MUTATED" "MAGEC1 WILD-TYPE"   "MAGEC1 MUTATED" "MAGEC1 WILD-TYPE" 
      TCGA-44-2662       TCGA-44-2665       TCGA-44-2666       TCGA-44-2668 
"MAGEC1 WILD-TYPE" "MAGEC1 WILD-TYPE" "MAGEC1 WILD-TYPE" "MAGEC1 WILD-TYPE" 
      TCGA-44-3396       TCGA-44-3398       TCGA-44-3918       TCGA-44-3919 
"MAGEC1 WILD-TYPE" "MAGEC1 WILD-TYPE" "MAGEC1 WILD-TYPE" "MAGEC1 WILD-TYPE" 
      TCGA-44-4112       TCGA-44-5643       TCGA-44-5645       TCGA-44-6144 
"MAGEC1 WILD-TYPE" "MAGEC1 WILD-TYPE" "MAGEC1 WILD-TYPE" "MAGEC1 WILD-TYPE" 
      TCGA-44-6145       TCGA-44-6146       TCGA-44-6147       TCGA-44-6148 
"MAGEC1 WILD-TYPE" "MAGEC1 WILD-TYPE" "MAGEC1 WILD-TYPE" "MAGEC1 WILD-TYPE" 
      TCGA-44-6774       TCGA-44-6775       TCGA-44-6776       TCGA-44-6777 
"MAGEC1 WILD-TYPE" "MAGEC1 WILD-TYPE" "MAGEC1 WILD-TYPE" "MAGEC1 WILD-TYPE" 
      TCGA-44-6778       TCGA-44-6779       TCGA-49-4486       TCGA-49-4487 
"MAGEC1 WILD-TYPE" "MAGEC1 WILD-TYPE" "MAGEC1 WILD-TYPE" "MAGEC1 WILD-TYPE" 
      TCGA-49-4488       TCGA-49-4490       TCGA-49-4494       TCGA-49-4501 
"MAGEC1 WILD-TYPE" "MAGEC1 WILD-TYPE" "MAGEC1 WILD-TYPE" "MAGEC1 WILD-TYPE" 
      TCGA-49-4505       TCGA-49-4506       TCGA-49-4507       TCGA-49-4510 
"MAGEC1 WILD-TYPE" "MAGEC1 WILD-TYPE" "MAGEC1 WILD-TYPE" "MAGEC1 WILD-TYPE" 
      TCGA-49-4512       TCGA-49-4514       TCGA-49-6742       TCGA-49-6743 
"MAGEC1 WILD-TYPE" "MAGEC1 WILD-TYPE" "MAGEC1 WILD-TYPE" "MAGEC1 WILD-TYPE" 
      TCGA-49-6744       TCGA-49-6745       TCGA-50-5044       TCGA-50-5045 
"MAGEC1 WILD-TYPE" "MAGEC1 WILD-TYPE" "MAGEC1 WILD-TYPE" "MAGEC1 WILD-TYPE" 
      TCGA-50-5049       TCGA-50-5051       TCGA-50-5055       TCGA-50-5066 
"MAGEC1 WILD-TYPE"   "MAGEC1 MUTATED" "MAGEC1 WILD-TYPE" "MAGEC1 WILD-TYPE" 
      TCGA-50-5068       TCGA-50-5072       TCGA-50-5930       TCGA-50-5931 
"MAGEC1 WILD-TYPE" "MAGEC1 WILD-TYPE" "MAGEC1 WILD-TYPE" "MAGEC1 WILD-TYPE" 
      TCGA-50-5932       TCGA-50-5933       TCGA-50-5935       TCGA-50-5936 
  "MAGEC1 MUTATED" "MAGEC1 WILD-TYPE" "MAGEC1 WILD-TYPE" "MAGEC1 WILD-TYPE" 
      TCGA-50-5939       TCGA-50-5941       TCGA-50-5942       TCGA-50-5944 
"MAGEC1 WILD-TYPE"   "MAGEC1 MUTATED" "MAGEC1 WILD-TYPE" "MAGEC1 WILD-TYPE" 
      TCGA-50-5946       TCGA-50-6590       TCGA-50-6591       TCGA-50-6592 
"MAGEC1 WILD-TYPE"   "MAGEC1 MUTATED" "MAGEC1 WILD-TYPE" "MAGEC1 WILD-TYPE" 
      TCGA-50-6593       TCGA-50-6594       TCGA-50-6595       TCGA-50-6597 
  "MAGEC1 MUTATED"   "MAGEC1 MUTATED" "MAGEC1 WILD-TYPE" "MAGEC1 WILD-TYPE" 
      TCGA-55-1592       TCGA-55-1594       TCGA-55-1595       TCGA-55-1596 
"MAGEC1 WILD-TYPE" "MAGEC1 WILD-TYPE" "MAGEC1 WILD-TYPE" "MAGEC1 WILD-TYPE" 
      TCGA-55-5899       TCGA-55-6543       TCGA-55-6642       TCGA-55-6712 
"MAGEC1 WILD-TYPE" "MAGEC1 WILD-TYPE" "MAGEC1 WILD-TYPE" "MAGEC1 WILD-TYPE" 
      TCGA-64-1676       TCGA-64-1677       TCGA-64-1678       TCGA-64-1680 
"MAGEC1 WILD-TYPE"   "MAGEC1 MUTATED" "MAGEC1 WILD-TYPE" "MAGEC1 WILD-TYPE" 
      TCGA-64-5774       TCGA-64-5775       TCGA-64-5778       TCGA-64-5779 
"MAGEC1 WILD-TYPE" "MAGEC1 WILD-TYPE"   "MAGEC1 MUTATED" "MAGEC1 WILD-TYPE" 
      TCGA-64-5781       TCGA-64-5815       TCGA-67-3770       TCGA-67-3771 
"MAGEC1 WILD-TYPE"   "MAGEC1 MUTATED" "MAGEC1 WILD-TYPE" "MAGEC1 WILD-TYPE" 
      TCGA-67-3772       TCGA-67-3773       TCGA-67-3774       TCGA-67-6215 
"MAGEC1 WILD-TYPE" "MAGEC1 WILD-TYPE" "MAGEC1 WILD-TYPE" "MAGEC1 WILD-TYPE" 
      TCGA-67-6216       TCGA-67-6217       TCGA-71-6725       TCGA-73-4658 
"MAGEC1 WILD-TYPE"   "MAGEC1 MUTATED" "MAGEC1 WILD-TYPE" "MAGEC1 WILD-TYPE" 
      TCGA-73-4659       TCGA-73-4662       TCGA-73-4666       TCGA-73-4668 
"MAGEC1 WILD-TYPE" "MAGEC1 WILD-TYPE" "MAGEC1 WILD-TYPE" "MAGEC1 WILD-TYPE" 
      TCGA-73-4670       TCGA-73-4675       TCGA-73-4676       TCGA-73-4677 
"MAGEC1 WILD-TYPE" "MAGEC1 WILD-TYPE" "MAGEC1 WILD-TYPE" "MAGEC1 WILD-TYPE" 
      TCGA-91-6828       TCGA-91-6829       TCGA-91-6831       TCGA-91-6835 
"MAGEC1 WILD-TYPE" "MAGEC1 WILD-TYPE" "MAGEC1 WILD-TYPE" "MAGEC1 WILD-TYPE" 
      TCGA-91-6836 
"MAGEC1 WILD-TYPE" 
      TCGA-05-4249       TCGA-05-4250       TCGA-05-4382       TCGA-05-4384 
"MAGEC1 WILD-TYPE" "MAGEC1 WILD-TYPE"   "MAGEC1 MUTATED" "MAGEC1 WILD-TYPE" 
      TCGA-05-4390       TCGA-05-4396       TCGA-05-4397       TCGA-05-4398 
"MAGEC1 WILD-TYPE"   "MAGEC1 MUTATED" "MAGEC1 WILD-TYPE" "MAGEC1 WILD-TYPE" 
      TCGA-05-4402       TCGA-05-4405       TCGA-05-4415       TCGA-05-4417 
"MAGEC1 WILD-TYPE" "MAGEC1 WILD-TYPE" "MAGEC1 WILD-TYPE" "MAGEC1 WILD-TYPE" 
      TCGA-05-4418       TCGA-05-4420       TCGA-05-4424       TCGA-05-4426 
"MAGEC1 WILD-TYPE" "MAGEC1 WILD-TYPE" "MAGEC1 WILD-TYPE" "MAGEC1 WILD-TYPE" 
      TCGA-05-4427       TCGA-05-4430       TCGA-05-4432       TCGA-05-4433 
  "MAGEC1 MUTATED"   "MAGEC1 MUTATED"   "MAGEC1 MUTATED" "MAGEC1 WILD-TYPE" 
      TCGA-05-4434       TCGA-05-5420       TCGA-05-5423       TCGA-05-5425 
"MAGEC1 WILD-TYPE" "MAGEC1 WILD-TYPE" "MAGEC1 WILD-TYPE" "MAGEC1 WILD-TYPE" 
      TCGA-05-5429       TCGA-05-5715       TCGA-35-3615       TCGA-35-4122 
"MAGEC1 WILD-TYPE" "MAGEC1 WILD-TYPE" "MAGEC1 WILD-TYPE" "MAGEC1 WILD-TYPE" 
      TCGA-35-4123       TCGA-35-5375       TCGA-38-4625       TCGA-38-4626 
"MAGEC1 WILD-TYPE" "MAGEC1 WILD-TYPE" "MAGEC1 WILD-TYPE"   "MAGEC1 MUTATED" 
      TCGA-38-4627       TCGA-38-4628       TCGA-38-4629       TCGA-38-4630 
"MAGEC1 WILD-TYPE" "MAGEC1 WILD-TYPE" "MAGEC1 WILD-TYPE" "MAGEC1 WILD-TYPE" 
      TCGA-38-4631       TCGA-38-4632       TCGA-38-6178       TCGA-44-2655 
  "MAGEC1 MUTATED"   "MAGEC1 MUTATED" "MAGEC1 WILD-TYPE" "MAGEC1 WILD-TYPE" 
      TCGA-44-2656       TCGA-44-2657       TCGA-44-2659       TCGA-44-2661 
  "MAGEC1 MUTATED" "MAGEC1 WILD-TYPE"   "MAGEC1 MUTATED" "MAGEC1 WILD-TYPE" 
      TCGA-44-2662       TCGA-44-2665       TCGA-44-2666       TCGA-44-2668 
"MAGEC1 WILD-TYPE" "MAGEC1 WILD-TYPE" "MAGEC1 WILD-TYPE" "MAGEC1 WILD-TYPE" 
      TCGA-44-3396       TCGA-44-3398       TCGA-44-3918       TCGA-44-3919 
"MAGEC1 WILD-TYPE" "MAGEC1 WILD-TYPE" "MAGEC1 WILD-TYPE" "MAGEC1 WILD-TYPE" 
      TCGA-44-4112       TCGA-44-5643       TCGA-44-5645       TCGA-44-6144 
"MAGEC1 WILD-TYPE" "MAGEC1 WILD-TYPE" "MAGEC1 WILD-TYPE" "MAGEC1 WILD-TYPE" 
      TCGA-44-6145       TCGA-44-6146       TCGA-44-6147       TCGA-44-6148 
"MAGEC1 WILD-TYPE" "MAGEC1 WILD-TYPE" "MAGEC1 WILD-TYPE" "MAGEC1 WILD-TYPE" 
      TCGA-44-6774       TCGA-44-6775       TCGA-44-6776       TCGA-44-6777 
"MAGEC1 WILD-TYPE" "MAGEC1 WILD-TYPE" "MAGEC1 WILD-TYPE" "MAGEC1 WILD-TYPE" 
      TCGA-44-6778       TCGA-44-6779       TCGA-49-4486       TCGA-49-4487 
"MAGEC1 WILD-TYPE" "MAGEC1 WILD-TYPE" "MAGEC1 WILD-TYPE" "MAGEC1 WILD-TYPE" 
      TCGA-49-4488       TCGA-49-4490       TCGA-49-4494       TCGA-49-4501 
"MAGEC1 WILD-TYPE" "MAGEC1 WILD-TYPE" "MAGEC1 WILD-TYPE" "MAGEC1 WILD-TYPE" 
      TCGA-49-4505       TCGA-49-4506       TCGA-49-4507       TCGA-49-4510 
"MAGEC1 WILD-TYPE" "MAGEC1 WILD-TYPE" "MAGEC1 WILD-TYPE" "MAGEC1 WILD-TYPE" 
      TCGA-49-4512       TCGA-49-4514       TCGA-49-6742       TCGA-49-6743 
"MAGEC1 WILD-TYPE" "MAGEC1 WILD-TYPE" "MAGEC1 WILD-TYPE" "MAGEC1 WILD-TYPE" 
      TCGA-49-6744       TCGA-49-6745       TCGA-50-5044       TCGA-50-5045 
"MAGEC1 WILD-TYPE" "MAGEC1 WILD-TYPE" "MAGEC1 WILD-TYPE" "MAGEC1 WILD-TYPE" 
      TCGA-50-5049       TCGA-50-5051       TCGA-50-5055       TCGA-50-5066 
"MAGEC1 WILD-TYPE"   "MAGEC1 MUTATED" "MAGEC1 WILD-TYPE" "MAGEC1 WILD-TYPE" 
      TCGA-50-5068       TCGA-50-5072       TCGA-50-5930       TCGA-50-5931 
"MAGEC1 WILD-TYPE" "MAGEC1 WILD-TYPE" "MAGEC1 WILD-TYPE" "MAGEC1 WILD-TYPE" 
      TCGA-50-5932       TCGA-50-5933       TCGA-50-5935       TCGA-50-5936 
  "MAGEC1 MUTATED" "MAGEC1 WILD-TYPE" "MAGEC1 WILD-TYPE" "MAGEC1 WILD-TYPE" 
      TCGA-50-5939       TCGA-50-5941       TCGA-50-5942       TCGA-50-5944 
"MAGEC1 WILD-TYPE"   "MAGEC1 MUTATED" "MAGEC1 WILD-TYPE" "MAGEC1 WILD-TYPE" 
      TCGA-50-5946       TCGA-50-6590       TCGA-50-6591       TCGA-50-6592 
"MAGEC1 WILD-TYPE"   "MAGEC1 MUTATED" "MAGEC1 WILD-TYPE" "MAGEC1 WILD-TYPE" 
      TCGA-50-6593       TCGA-50-6594       TCGA-50-6595       TCGA-50-6597 
  "MAGEC1 MUTATED"   "MAGEC1 MUTATED" "MAGEC1 WILD-TYPE" "MAGEC1 WILD-TYPE" 
      TCGA-55-1592       TCGA-55-1594       TCGA-55-1595       TCGA-55-1596 
"MAGEC1 WILD-TYPE" "MAGEC1 WILD-TYPE" "MAGEC1 WILD-TYPE" "MAGEC1 WILD-TYPE" 
      TCGA-55-5899       TCGA-55-6543       TCGA-55-6642       TCGA-55-6712 
"MAGEC1 WILD-TYPE" "MAGEC1 WILD-TYPE" "MAGEC1 WILD-TYPE" "MAGEC1 WILD-TYPE" 
      TCGA-64-1676       TCGA-64-1677       TCGA-64-1678       TCGA-64-1680 
"MAGEC1 WILD-TYPE"   "MAGEC1 MUTATED" "MAGEC1 WILD-TYPE" "MAGEC1 WILD-TYPE" 
      TCGA-64-5774       TCGA-64-5775       TCGA-64-5778       TCGA-64-5779 
"MAGEC1 WILD-TYPE" "MAGEC1 WILD-TYPE"   "MAGEC1 MUTATED" "MAGEC1 WILD-TYPE" 
      TCGA-64-5781       TCGA-64-5815       TCGA-67-3770       TCGA-67-3771 
"MAGEC1 WILD-TYPE"   "MAGEC1 MUTATED" "MAGEC1 WILD-TYPE" "MAGEC1 WILD-TYPE" 
      TCGA-67-3772       TCGA-67-3773       TCGA-67-3774       TCGA-67-6215 
"MAGEC1 WILD-TYPE" "MAGEC1 WILD-TYPE" "MAGEC1 WILD-TYPE" "MAGEC1 WILD-TYPE" 
      TCGA-67-6216       TCGA-67-6217       TCGA-71-6725       TCGA-73-4658 
"MAGEC1 WILD-TYPE"   "MAGEC1 MUTATED" "MAGEC1 WILD-TYPE" "MAGEC1 WILD-TYPE" 
      TCGA-73-4659       TCGA-73-4662       TCGA-73-4666       TCGA-73-4668 
"MAGEC1 WILD-TYPE" "MAGEC1 WILD-TYPE" "MAGEC1 WILD-TYPE" "MAGEC1 WILD-TYPE" 
      TCGA-73-4670       TCGA-73-4675       TCGA-73-4676       TCGA-73-4677 
"MAGEC1 WILD-TYPE" "MAGEC1 WILD-TYPE" "MAGEC1 WILD-TYPE" "MAGEC1 WILD-TYPE" 
      TCGA-91-6828       TCGA-91-6829       TCGA-91-6831       TCGA-91-6835 
"MAGEC1 WILD-TYPE" "MAGEC1 WILD-TYPE" "MAGEC1 WILD-TYPE" "MAGEC1 WILD-TYPE" 
      TCGA-91-6836 
"MAGEC1 WILD-TYPE" 
[1] "hr=" "1"  
D6V2, continuous
D6V3, binary
[1] "tbl2"
                  cls
clus               [,1] [,2]
  MAGEC1 MUTATED     13   10
  MAGEC1 WILD-TYPE   80   69
        clus
vv       MAGEC1 MUTATED MAGEC1 WILD-TYPE
  FEMALE             13               80
  MALE               10               69
D6V4, continuous
[1] "Remove cluster labels:" "MAGEC1 MUTATED"        
clus
  MAGEC1 MUTATED MAGEC1 WILD-TYPE 
               2               10 
      TCGA-35-4122       TCGA-35-4123       TCGA-35-5375       TCGA-71-6725 
"MAGEC1 WILD-TYPE" "MAGEC1 WILD-TYPE" "MAGEC1 WILD-TYPE" "MAGEC1 WILD-TYPE" 
      TCGA-73-4659       TCGA-73-4662       TCGA-73-4666       TCGA-73-4668 
"MAGEC1 WILD-TYPE" "MAGEC1 WILD-TYPE" "MAGEC1 WILD-TYPE" "MAGEC1 WILD-TYPE" 
      TCGA-73-4676       TCGA-75-5122 
"MAGEC1 WILD-TYPE" "MAGEC1 WILD-TYPE" 
D6V5, multiclass
D6V6, multiclass
    clus
vv   MAGEC1 MUTATED MAGEC1 WILD-TYPE
  T1              2               39
  T2             18               90
  T3              2               12
  T4              1                7
D6V7, multiclass
       clus
vv      MAGEC1 MUTATED MAGEC1 WILD-TYPE
  N0                 8               87
  N1                 8               29
  N2+N3              7               28
D6V8, multiclass
    clus
vv   MAGEC1 MUTATED MAGEC1 WILD-TYPE
  M0             22              115
  M1              1                8
  MX              0               22
D6V9, multiclass
     clus
vv    MAGEC1 MUTATED MAGEC1 WILD-TYPE
  I                7               81
  II               7               26
  III              8               31
  IV               1                8
D6V10, binary
[1] "tbl2"
                  cls
clus               [,1] [,2]
  MAGEC1 MUTATED      1   22
  MAGEC1 WILD-TYPE   15  134
     clus
vv    MAGEC1 MUTATED MAGEC1 WILD-TYPE
  NO               1               15
  YES             22              134
D6V11, continuous
D6V12, continuous
D6V13, multiclass
                                             clus
vv                                            MAGEC1 MUTATED MAGEC1 WILD-TYPE
  CURRENT REFORMED SMOKER FOR < OR = 15 YEARS             14               48
  CURRENT REFORMED SMOKER FOR > 15 YEARS                   4               42
  CURRENT SMOKER                                           4               24
  LIFELONG NON-SMOKER                                      0               24
D6V14, continuous

Clustering(7) Variable = CDH10 MUTATION ANALYSIS
D7V1, survival
                 sevent
clus2              0  1
  CDH10 MUTATED   23  8
  CDH10 WILD-TYPE 76 42
  CDH10 MUTATED CDH10 WILD-TYPE 
             31             118 
  CDH10 MUTATED CDH10 WILD-TYPE 
              8              42 
$`CDH10 MUTATED`
TCGA-05-4382 TCGA-05-4396 TCGA-05-4398 TCGA-05-4405 TCGA-05-4415 TCGA-05-4424 
       19.92         9.96        47.05        20.05         2.96        30.02 
TCGA-05-4427 TCGA-35-3615 TCGA-44-2657 TCGA-44-2668 TCGA-44-3398 TCGA-44-3918 
       26.01         0.46        13.15         8.09         8.32         6.44 
TCGA-44-6145 TCGA-49-4512 TCGA-49-4514 TCGA-49-6743 TCGA-50-5045 TCGA-50-5049 
        3.35        29.75        43.20        12.13        71.47        48.82 
TCGA-50-5068 TCGA-50-5942 TCGA-50-6590 TCGA-50-6593 TCGA-64-5774 TCGA-64-5778 
       49.28         4.44        42.31        11.05        83.84        30.44 
TCGA-64-5781 TCGA-67-3770 TCGA-67-3771 TCGA-73-4658 TCGA-91-6828 TCGA-91-6831 
       39.52         0.99         1.97        52.57         1.22         1.28 
TCGA-91-6835 
        1.15 

$`CDH10 WILD-TYPE`
TCGA-05-4249 TCGA-05-4250 TCGA-05-4384 TCGA-05-4390 TCGA-05-4397 TCGA-05-4402 
       38.07         3.98        14.01        37.02        24.03         8.02 
TCGA-05-4417 TCGA-05-4418 TCGA-05-4420 TCGA-05-4426 TCGA-05-4430 TCGA-05-4432 
       14.93         8.98        29.95        26.01        25.02        25.02 
TCGA-05-4433 TCGA-05-4434 TCGA-05-5420 TCGA-05-5423 TCGA-05-5425 TCGA-05-5429 
       24.00        15.02         1.02         4.96         2.96         0.99 
TCGA-05-5715 TCGA-35-4122 TCGA-35-4123 TCGA-35-5375 TCGA-38-4625 TCGA-38-4626 
        2.04         7.36         5.95         8.68        47.61        85.32 
TCGA-38-4627 TCGA-38-4628 TCGA-38-4629 TCGA-38-4630 TCGA-38-4631 TCGA-38-4632 
       37.71        49.02        28.37        35.28        11.64        44.61 
TCGA-38-6178 TCGA-44-2655 TCGA-44-2656 TCGA-44-2659 TCGA-44-2661 TCGA-44-2662 
        5.19        18.87        19.10        17.39         3.39        15.78 
TCGA-44-2665 TCGA-44-2666 TCGA-44-3396 TCGA-44-3919 TCGA-44-4112 TCGA-44-5643 
       13.15         3.19        10.22         6.21         4.60         3.48 
TCGA-44-5645 TCGA-44-6144 TCGA-44-6146 TCGA-44-6147 TCGA-44-6148 TCGA-44-6774 
        6.84         0.30         9.93         7.76         3.12         5.42 
TCGA-44-6775 TCGA-44-6776 TCGA-44-6777 TCGA-44-6778 TCGA-44-6779 TCGA-49-4486 
        2.70        63.72        32.45        36.49        16.41        76.21 
TCGA-49-4487 TCGA-49-4488 TCGA-49-4490 TCGA-49-4494 TCGA-49-4501 TCGA-49-4505 
       28.11        28.57        12.66        35.54        46.72        14.07 
TCGA-49-4506 TCGA-49-4507 TCGA-49-4510 TCGA-49-6742 TCGA-49-6744 TCGA-49-6745 
       32.84         8.81        29.46        15.02        12.99         4.93 
TCGA-50-5044 TCGA-50-5051 TCGA-50-5055 TCGA-50-5066 TCGA-50-5072 TCGA-50-5930 
       20.48        14.96        25.81         9.76         8.05         9.27 
TCGA-50-5931 TCGA-50-5932 TCGA-50-5933 TCGA-50-5935 TCGA-50-5936 TCGA-50-5939 
        8.78        35.87        77.88        21.47         8.45        15.12 
TCGA-50-5941 TCGA-50-5944 TCGA-50-5946 TCGA-50-6591 TCGA-50-6592 TCGA-50-6594 
        9.37        12.26        11.47         3.88        25.51        12.16 
TCGA-50-6595 TCGA-50-6597 TCGA-55-1592 TCGA-55-1594 TCGA-55-1595 TCGA-55-1596 
        6.21        33.37        23.05        38.73        48.62        45.17 
TCGA-55-5899 TCGA-55-6543 TCGA-55-6642 TCGA-55-6712 TCGA-64-1676 TCGA-64-1677 
        2.86         0.07        32.61         0.79        56.81        20.65 
TCGA-64-1678 TCGA-64-1680 TCGA-64-5775 TCGA-64-5779 TCGA-64-5815 TCGA-67-3772 
       39.09        37.02         0.10        16.67         7.33         0.59 
TCGA-67-3773 TCGA-67-3774 TCGA-67-6215 TCGA-67-6216 TCGA-67-6217 TCGA-71-6725 
        2.04         0.59         0.89         0.69        13.87         2.01 
TCGA-73-4659 TCGA-73-4662 TCGA-73-4666 TCGA-73-4668 TCGA-73-4670 TCGA-73-4675 
       23.38        29.95        20.28        15.35         0.46         1.32 
TCGA-73-4676 TCGA-73-4677 TCGA-91-6829 TCGA-91-6836 
        4.01         1.25        41.33         0.36 

  CDH10 MUTATED CDH10 WILD-TYPE 
           0.46            0.07 
  CDH10 MUTATED CDH10 WILD-TYPE 
          83.84           85.32 
  CDH10 MUTATED CDH10 WILD-TYPE 
          13.15           13.94 
[1] "0.5 - 83.8 (13.2)" "0.1 - 85.3 (13.9)"
     TCGA-05-4249      TCGA-05-4250      TCGA-05-4382      TCGA-05-4384 
"CDH10 WILD-TYPE" "CDH10 WILD-TYPE"   "CDH10 MUTATED" "CDH10 WILD-TYPE" 
     TCGA-05-4390      TCGA-05-4396      TCGA-05-4397      TCGA-05-4398 
"CDH10 WILD-TYPE"   "CDH10 MUTATED" "CDH10 WILD-TYPE"   "CDH10 MUTATED" 
     TCGA-05-4402      TCGA-05-4405      TCGA-05-4415      TCGA-05-4417 
"CDH10 WILD-TYPE"   "CDH10 MUTATED"   "CDH10 MUTATED" "CDH10 WILD-TYPE" 
     TCGA-05-4418      TCGA-05-4420      TCGA-05-4424      TCGA-05-4426 
"CDH10 WILD-TYPE" "CDH10 WILD-TYPE"   "CDH10 MUTATED" "CDH10 WILD-TYPE" 
     TCGA-05-4427      TCGA-05-4430      TCGA-05-4432      TCGA-05-4433 
  "CDH10 MUTATED" "CDH10 WILD-TYPE" "CDH10 WILD-TYPE" "CDH10 WILD-TYPE" 
     TCGA-05-4434      TCGA-05-5420      TCGA-05-5423      TCGA-05-5425 
"CDH10 WILD-TYPE" "CDH10 WILD-TYPE" "CDH10 WILD-TYPE" "CDH10 WILD-TYPE" 
     TCGA-05-5429      TCGA-05-5715      TCGA-35-3615      TCGA-35-4122 
"CDH10 WILD-TYPE" "CDH10 WILD-TYPE"   "CDH10 MUTATED" "CDH10 WILD-TYPE" 
     TCGA-35-4123      TCGA-35-5375      TCGA-38-4625      TCGA-38-4626 
"CDH10 WILD-TYPE" "CDH10 WILD-TYPE" "CDH10 WILD-TYPE" "CDH10 WILD-TYPE" 
     TCGA-38-4627      TCGA-38-4628      TCGA-38-4629      TCGA-38-4630 
"CDH10 WILD-TYPE" "CDH10 WILD-TYPE" "CDH10 WILD-TYPE" "CDH10 WILD-TYPE" 
     TCGA-38-4631      TCGA-38-4632      TCGA-38-6178      TCGA-44-2655 
"CDH10 WILD-TYPE" "CDH10 WILD-TYPE" "CDH10 WILD-TYPE" "CDH10 WILD-TYPE" 
     TCGA-44-2656      TCGA-44-2657      TCGA-44-2659      TCGA-44-2661 
"CDH10 WILD-TYPE"   "CDH10 MUTATED" "CDH10 WILD-TYPE" "CDH10 WILD-TYPE" 
     TCGA-44-2662      TCGA-44-2665      TCGA-44-2666      TCGA-44-2668 
"CDH10 WILD-TYPE" "CDH10 WILD-TYPE" "CDH10 WILD-TYPE"   "CDH10 MUTATED" 
     TCGA-44-3396      TCGA-44-3398      TCGA-44-3918      TCGA-44-3919 
"CDH10 WILD-TYPE"   "CDH10 MUTATED"   "CDH10 MUTATED" "CDH10 WILD-TYPE" 
     TCGA-44-4112      TCGA-44-5643      TCGA-44-5645      TCGA-44-6144 
"CDH10 WILD-TYPE" "CDH10 WILD-TYPE" "CDH10 WILD-TYPE" "CDH10 WILD-TYPE" 
     TCGA-44-6145      TCGA-44-6146      TCGA-44-6147      TCGA-44-6148 
  "CDH10 MUTATED" "CDH10 WILD-TYPE" "CDH10 WILD-TYPE" "CDH10 WILD-TYPE" 
     TCGA-44-6774      TCGA-44-6775      TCGA-44-6776      TCGA-44-6777 
"CDH10 WILD-TYPE" "CDH10 WILD-TYPE" "CDH10 WILD-TYPE" "CDH10 WILD-TYPE" 
     TCGA-44-6778      TCGA-44-6779      TCGA-49-4486      TCGA-49-4487 
"CDH10 WILD-TYPE" "CDH10 WILD-TYPE" "CDH10 WILD-TYPE" "CDH10 WILD-TYPE" 
     TCGA-49-4488      TCGA-49-4490      TCGA-49-4494      TCGA-49-4501 
"CDH10 WILD-TYPE" "CDH10 WILD-TYPE" "CDH10 WILD-TYPE" "CDH10 WILD-TYPE" 
     TCGA-49-4505      TCGA-49-4506      TCGA-49-4507      TCGA-49-4510 
"CDH10 WILD-TYPE" "CDH10 WILD-TYPE" "CDH10 WILD-TYPE" "CDH10 WILD-TYPE" 
     TCGA-49-4512      TCGA-49-4514      TCGA-49-6742      TCGA-49-6743 
  "CDH10 MUTATED"   "CDH10 MUTATED" "CDH10 WILD-TYPE"   "CDH10 MUTATED" 
     TCGA-49-6744      TCGA-49-6745      TCGA-50-5044      TCGA-50-5045 
"CDH10 WILD-TYPE" "CDH10 WILD-TYPE" "CDH10 WILD-TYPE"   "CDH10 MUTATED" 
     TCGA-50-5049      TCGA-50-5051      TCGA-50-5055      TCGA-50-5066 
  "CDH10 MUTATED" "CDH10 WILD-TYPE" "CDH10 WILD-TYPE" "CDH10 WILD-TYPE" 
     TCGA-50-5068      TCGA-50-5072      TCGA-50-5930      TCGA-50-5931 
  "CDH10 MUTATED" "CDH10 WILD-TYPE" "CDH10 WILD-TYPE" "CDH10 WILD-TYPE" 
     TCGA-50-5932      TCGA-50-5933      TCGA-50-5935      TCGA-50-5936 
"CDH10 WILD-TYPE" "CDH10 WILD-TYPE" "CDH10 WILD-TYPE" "CDH10 WILD-TYPE" 
     TCGA-50-5939      TCGA-50-5941      TCGA-50-5942      TCGA-50-5944 
"CDH10 WILD-TYPE" "CDH10 WILD-TYPE"   "CDH10 MUTATED" "CDH10 WILD-TYPE" 
     TCGA-50-5946      TCGA-50-6590      TCGA-50-6591      TCGA-50-6592 
"CDH10 WILD-TYPE"   "CDH10 MUTATED" "CDH10 WILD-TYPE" "CDH10 WILD-TYPE" 
     TCGA-50-6593      TCGA-50-6594      TCGA-50-6595      TCGA-50-6597 
  "CDH10 MUTATED" "CDH10 WILD-TYPE" "CDH10 WILD-TYPE" "CDH10 WILD-TYPE" 
     TCGA-55-1592      TCGA-55-1594      TCGA-55-1595      TCGA-55-1596 
"CDH10 WILD-TYPE" "CDH10 WILD-TYPE" "CDH10 WILD-TYPE" "CDH10 WILD-TYPE" 
     TCGA-55-5899      TCGA-55-6543      TCGA-55-6642      TCGA-55-6712 
"CDH10 WILD-TYPE" "CDH10 WILD-TYPE" "CDH10 WILD-TYPE" "CDH10 WILD-TYPE" 
     TCGA-64-1676      TCGA-64-1677      TCGA-64-1678      TCGA-64-1680 
"CDH10 WILD-TYPE" "CDH10 WILD-TYPE" "CDH10 WILD-TYPE" "CDH10 WILD-TYPE" 
     TCGA-64-5774      TCGA-64-5775      TCGA-64-5778      TCGA-64-5779 
  "CDH10 MUTATED" "CDH10 WILD-TYPE"   "CDH10 MUTATED" "CDH10 WILD-TYPE" 
     TCGA-64-5781      TCGA-64-5815      TCGA-67-3770      TCGA-67-3771 
  "CDH10 MUTATED" "CDH10 WILD-TYPE"   "CDH10 MUTATED"   "CDH10 MUTATED" 
     TCGA-67-3772      TCGA-67-3773      TCGA-67-3774      TCGA-67-6215 
"CDH10 WILD-TYPE" "CDH10 WILD-TYPE" "CDH10 WILD-TYPE" "CDH10 WILD-TYPE" 
     TCGA-67-6216      TCGA-67-6217      TCGA-71-6725      TCGA-73-4658 
"CDH10 WILD-TYPE" "CDH10 WILD-TYPE" "CDH10 WILD-TYPE"   "CDH10 MUTATED" 
     TCGA-73-4659      TCGA-73-4662      TCGA-73-4666      TCGA-73-4668 
"CDH10 WILD-TYPE" "CDH10 WILD-TYPE" "CDH10 WILD-TYPE" "CDH10 WILD-TYPE" 
     TCGA-73-4670      TCGA-73-4675      TCGA-73-4676      TCGA-73-4677 
"CDH10 WILD-TYPE" "CDH10 WILD-TYPE" "CDH10 WILD-TYPE" "CDH10 WILD-TYPE" 
     TCGA-91-6828      TCGA-91-6829      TCGA-91-6831      TCGA-91-6835 
  "CDH10 MUTATED" "CDH10 WILD-TYPE"   "CDH10 MUTATED"   "CDH10 MUTATED" 
     TCGA-91-6836 
"CDH10 WILD-TYPE" 
     TCGA-05-4249      TCGA-05-4250      TCGA-05-4382      TCGA-05-4384 
"CDH10 WILD-TYPE" "CDH10 WILD-TYPE"   "CDH10 MUTATED" "CDH10 WILD-TYPE" 
     TCGA-05-4390      TCGA-05-4396      TCGA-05-4397      TCGA-05-4398 
"CDH10 WILD-TYPE"   "CDH10 MUTATED" "CDH10 WILD-TYPE"   "CDH10 MUTATED" 
     TCGA-05-4402      TCGA-05-4405      TCGA-05-4415      TCGA-05-4417 
"CDH10 WILD-TYPE"   "CDH10 MUTATED"   "CDH10 MUTATED" "CDH10 WILD-TYPE" 
     TCGA-05-4418      TCGA-05-4420      TCGA-05-4424      TCGA-05-4426 
"CDH10 WILD-TYPE" "CDH10 WILD-TYPE"   "CDH10 MUTATED" "CDH10 WILD-TYPE" 
     TCGA-05-4427      TCGA-05-4430      TCGA-05-4432      TCGA-05-4433 
  "CDH10 MUTATED" "CDH10 WILD-TYPE" "CDH10 WILD-TYPE" "CDH10 WILD-TYPE" 
     TCGA-05-4434      TCGA-05-5420      TCGA-05-5423      TCGA-05-5425 
"CDH10 WILD-TYPE" "CDH10 WILD-TYPE" "CDH10 WILD-TYPE" "CDH10 WILD-TYPE" 
     TCGA-05-5429      TCGA-05-5715      TCGA-35-3615      TCGA-35-4122 
"CDH10 WILD-TYPE" "CDH10 WILD-TYPE"   "CDH10 MUTATED" "CDH10 WILD-TYPE" 
     TCGA-35-4123      TCGA-35-5375      TCGA-38-4625      TCGA-38-4626 
"CDH10 WILD-TYPE" "CDH10 WILD-TYPE" "CDH10 WILD-TYPE" "CDH10 WILD-TYPE" 
     TCGA-38-4627      TCGA-38-4628      TCGA-38-4629      TCGA-38-4630 
"CDH10 WILD-TYPE" "CDH10 WILD-TYPE" "CDH10 WILD-TYPE" "CDH10 WILD-TYPE" 
     TCGA-38-4631      TCGA-38-4632      TCGA-38-6178      TCGA-44-2655 
"CDH10 WILD-TYPE" "CDH10 WILD-TYPE" "CDH10 WILD-TYPE" "CDH10 WILD-TYPE" 
     TCGA-44-2656      TCGA-44-2657      TCGA-44-2659      TCGA-44-2661 
"CDH10 WILD-TYPE"   "CDH10 MUTATED" "CDH10 WILD-TYPE" "CDH10 WILD-TYPE" 
     TCGA-44-2662      TCGA-44-2665      TCGA-44-2666      TCGA-44-2668 
"CDH10 WILD-TYPE" "CDH10 WILD-TYPE" "CDH10 WILD-TYPE"   "CDH10 MUTATED" 
     TCGA-44-3396      TCGA-44-3398      TCGA-44-3918      TCGA-44-3919 
"CDH10 WILD-TYPE"   "CDH10 MUTATED"   "CDH10 MUTATED" "CDH10 WILD-TYPE" 
     TCGA-44-4112      TCGA-44-5643      TCGA-44-5645      TCGA-44-6144 
"CDH10 WILD-TYPE" "CDH10 WILD-TYPE" "CDH10 WILD-TYPE" "CDH10 WILD-TYPE" 
     TCGA-44-6145      TCGA-44-6146      TCGA-44-6147      TCGA-44-6148 
  "CDH10 MUTATED" "CDH10 WILD-TYPE" "CDH10 WILD-TYPE" "CDH10 WILD-TYPE" 
     TCGA-44-6774      TCGA-44-6775      TCGA-44-6776      TCGA-44-6777 
"CDH10 WILD-TYPE" "CDH10 WILD-TYPE" "CDH10 WILD-TYPE" "CDH10 WILD-TYPE" 
     TCGA-44-6778      TCGA-44-6779      TCGA-49-4486      TCGA-49-4487 
"CDH10 WILD-TYPE" "CDH10 WILD-TYPE" "CDH10 WILD-TYPE" "CDH10 WILD-TYPE" 
     TCGA-49-4488      TCGA-49-4490      TCGA-49-4494      TCGA-49-4501 
"CDH10 WILD-TYPE" "CDH10 WILD-TYPE" "CDH10 WILD-TYPE" "CDH10 WILD-TYPE" 
     TCGA-49-4505      TCGA-49-4506      TCGA-49-4507      TCGA-49-4510 
"CDH10 WILD-TYPE" "CDH10 WILD-TYPE" "CDH10 WILD-TYPE" "CDH10 WILD-TYPE" 
     TCGA-49-4512      TCGA-49-4514      TCGA-49-6742      TCGA-49-6743 
  "CDH10 MUTATED"   "CDH10 MUTATED" "CDH10 WILD-TYPE"   "CDH10 MUTATED" 
     TCGA-49-6744      TCGA-49-6745      TCGA-50-5044      TCGA-50-5045 
"CDH10 WILD-TYPE" "CDH10 WILD-TYPE" "CDH10 WILD-TYPE"   "CDH10 MUTATED" 
     TCGA-50-5049      TCGA-50-5051      TCGA-50-5055      TCGA-50-5066 
  "CDH10 MUTATED" "CDH10 WILD-TYPE" "CDH10 WILD-TYPE" "CDH10 WILD-TYPE" 
     TCGA-50-5068      TCGA-50-5072      TCGA-50-5930      TCGA-50-5931 
  "CDH10 MUTATED" "CDH10 WILD-TYPE" "CDH10 WILD-TYPE" "CDH10 WILD-TYPE" 
     TCGA-50-5932      TCGA-50-5933      TCGA-50-5935      TCGA-50-5936 
"CDH10 WILD-TYPE" "CDH10 WILD-TYPE" "CDH10 WILD-TYPE" "CDH10 WILD-TYPE" 
     TCGA-50-5939      TCGA-50-5941      TCGA-50-5942      TCGA-50-5944 
"CDH10 WILD-TYPE" "CDH10 WILD-TYPE"   "CDH10 MUTATED" "CDH10 WILD-TYPE" 
     TCGA-50-5946      TCGA-50-6590      TCGA-50-6591      TCGA-50-6592 
"CDH10 WILD-TYPE"   "CDH10 MUTATED" "CDH10 WILD-TYPE" "CDH10 WILD-TYPE" 
     TCGA-50-6593      TCGA-50-6594      TCGA-50-6595      TCGA-50-6597 
  "CDH10 MUTATED" "CDH10 WILD-TYPE" "CDH10 WILD-TYPE" "CDH10 WILD-TYPE" 
     TCGA-55-1592      TCGA-55-1594      TCGA-55-1595      TCGA-55-1596 
"CDH10 WILD-TYPE" "CDH10 WILD-TYPE" "CDH10 WILD-TYPE" "CDH10 WILD-TYPE" 
     TCGA-55-5899      TCGA-55-6543      TCGA-55-6642      TCGA-55-6712 
"CDH10 WILD-TYPE" "CDH10 WILD-TYPE" "CDH10 WILD-TYPE" "CDH10 WILD-TYPE" 
     TCGA-64-1676      TCGA-64-1677      TCGA-64-1678      TCGA-64-1680 
"CDH10 WILD-TYPE" "CDH10 WILD-TYPE" "CDH10 WILD-TYPE" "CDH10 WILD-TYPE" 
     TCGA-64-5774      TCGA-64-5775      TCGA-64-5778      TCGA-64-5779 
  "CDH10 MUTATED" "CDH10 WILD-TYPE"   "CDH10 MUTATED" "CDH10 WILD-TYPE" 
     TCGA-64-5781      TCGA-64-5815      TCGA-67-3770      TCGA-67-3771 
  "CDH10 MUTATED" "CDH10 WILD-TYPE"   "CDH10 MUTATED"   "CDH10 MUTATED" 
     TCGA-67-3772      TCGA-67-3773      TCGA-67-3774      TCGA-67-6215 
"CDH10 WILD-TYPE" "CDH10 WILD-TYPE" "CDH10 WILD-TYPE" "CDH10 WILD-TYPE" 
     TCGA-67-6216      TCGA-67-6217      TCGA-71-6725      TCGA-73-4658 
"CDH10 WILD-TYPE" "CDH10 WILD-TYPE" "CDH10 WILD-TYPE"   "CDH10 MUTATED" 
     TCGA-73-4659      TCGA-73-4662      TCGA-73-4666      TCGA-73-4668 
"CDH10 WILD-TYPE" "CDH10 WILD-TYPE" "CDH10 WILD-TYPE" "CDH10 WILD-TYPE" 
     TCGA-73-4670      TCGA-73-4675      TCGA-73-4676      TCGA-73-4677 
"CDH10 WILD-TYPE" "CDH10 WILD-TYPE" "CDH10 WILD-TYPE" "CDH10 WILD-TYPE" 
     TCGA-91-6828      TCGA-91-6829      TCGA-91-6831      TCGA-91-6835 
  "CDH10 MUTATED" "CDH10 WILD-TYPE"   "CDH10 MUTATED"   "CDH10 MUTATED" 
     TCGA-91-6836 
"CDH10 WILD-TYPE" 
     TCGA-05-4249      TCGA-05-4250      TCGA-05-4382      TCGA-05-4384 
"CDH10 WILD-TYPE" "CDH10 WILD-TYPE"   "CDH10 MUTATED" "CDH10 WILD-TYPE" 
     TCGA-05-4390      TCGA-05-4396      TCGA-05-4397      TCGA-05-4398 
"CDH10 WILD-TYPE"   "CDH10 MUTATED" "CDH10 WILD-TYPE"   "CDH10 MUTATED" 
     TCGA-05-4402      TCGA-05-4405      TCGA-05-4415      TCGA-05-4417 
"CDH10 WILD-TYPE"   "CDH10 MUTATED"   "CDH10 MUTATED" "CDH10 WILD-TYPE" 
     TCGA-05-4418      TCGA-05-4420      TCGA-05-4424      TCGA-05-4426 
"CDH10 WILD-TYPE" "CDH10 WILD-TYPE"   "CDH10 MUTATED" "CDH10 WILD-TYPE" 
     TCGA-05-4427      TCGA-05-4430      TCGA-05-4432      TCGA-05-4433 
  "CDH10 MUTATED" "CDH10 WILD-TYPE" "CDH10 WILD-TYPE" "CDH10 WILD-TYPE" 
     TCGA-05-4434      TCGA-05-5420      TCGA-05-5423      TCGA-05-5425 
"CDH10 WILD-TYPE" "CDH10 WILD-TYPE" "CDH10 WILD-TYPE" "CDH10 WILD-TYPE" 
     TCGA-05-5429      TCGA-05-5715      TCGA-35-3615      TCGA-35-4122 
"CDH10 WILD-TYPE" "CDH10 WILD-TYPE"   "CDH10 MUTATED" "CDH10 WILD-TYPE" 
     TCGA-35-4123      TCGA-35-5375      TCGA-38-4625      TCGA-38-4626 
"CDH10 WILD-TYPE" "CDH10 WILD-TYPE" "CDH10 WILD-TYPE" "CDH10 WILD-TYPE" 
     TCGA-38-4627      TCGA-38-4628      TCGA-38-4629      TCGA-38-4630 
"CDH10 WILD-TYPE" "CDH10 WILD-TYPE" "CDH10 WILD-TYPE" "CDH10 WILD-TYPE" 
     TCGA-38-4631      TCGA-38-4632      TCGA-38-6178      TCGA-44-2655 
"CDH10 WILD-TYPE" "CDH10 WILD-TYPE" "CDH10 WILD-TYPE" "CDH10 WILD-TYPE" 
     TCGA-44-2656      TCGA-44-2657      TCGA-44-2659      TCGA-44-2661 
"CDH10 WILD-TYPE"   "CDH10 MUTATED" "CDH10 WILD-TYPE" "CDH10 WILD-TYPE" 
     TCGA-44-2662      TCGA-44-2665      TCGA-44-2666      TCGA-44-2668 
"CDH10 WILD-TYPE" "CDH10 WILD-TYPE" "CDH10 WILD-TYPE"   "CDH10 MUTATED" 
     TCGA-44-3396      TCGA-44-3398      TCGA-44-3918      TCGA-44-3919 
"CDH10 WILD-TYPE"   "CDH10 MUTATED"   "CDH10 MUTATED" "CDH10 WILD-TYPE" 
     TCGA-44-4112      TCGA-44-5643      TCGA-44-5645      TCGA-44-6144 
"CDH10 WILD-TYPE" "CDH10 WILD-TYPE" "CDH10 WILD-TYPE" "CDH10 WILD-TYPE" 
     TCGA-44-6145      TCGA-44-6146      TCGA-44-6147      TCGA-44-6148 
  "CDH10 MUTATED" "CDH10 WILD-TYPE" "CDH10 WILD-TYPE" "CDH10 WILD-TYPE" 
     TCGA-44-6774      TCGA-44-6775      TCGA-44-6776      TCGA-44-6777 
"CDH10 WILD-TYPE" "CDH10 WILD-TYPE" "CDH10 WILD-TYPE" "CDH10 WILD-TYPE" 
     TCGA-44-6778      TCGA-44-6779      TCGA-49-4486      TCGA-49-4487 
"CDH10 WILD-TYPE" "CDH10 WILD-TYPE" "CDH10 WILD-TYPE" "CDH10 WILD-TYPE" 
     TCGA-49-4488      TCGA-49-4490      TCGA-49-4494      TCGA-49-4501 
"CDH10 WILD-TYPE" "CDH10 WILD-TYPE" "CDH10 WILD-TYPE" "CDH10 WILD-TYPE" 
     TCGA-49-4505      TCGA-49-4506      TCGA-49-4507      TCGA-49-4510 
"CDH10 WILD-TYPE" "CDH10 WILD-TYPE" "CDH10 WILD-TYPE" "CDH10 WILD-TYPE" 
     TCGA-49-4512      TCGA-49-4514      TCGA-49-6742      TCGA-49-6743 
  "CDH10 MUTATED"   "CDH10 MUTATED" "CDH10 WILD-TYPE"   "CDH10 MUTATED" 
     TCGA-49-6744      TCGA-49-6745      TCGA-50-5044      TCGA-50-5045 
"CDH10 WILD-TYPE" "CDH10 WILD-TYPE" "CDH10 WILD-TYPE"   "CDH10 MUTATED" 
     TCGA-50-5049      TCGA-50-5051      TCGA-50-5055      TCGA-50-5066 
  "CDH10 MUTATED" "CDH10 WILD-TYPE" "CDH10 WILD-TYPE" "CDH10 WILD-TYPE" 
     TCGA-50-5068      TCGA-50-5072      TCGA-50-5930      TCGA-50-5931 
  "CDH10 MUTATED" "CDH10 WILD-TYPE" "CDH10 WILD-TYPE" "CDH10 WILD-TYPE" 
     TCGA-50-5932      TCGA-50-5933      TCGA-50-5935      TCGA-50-5936 
"CDH10 WILD-TYPE" "CDH10 WILD-TYPE" "CDH10 WILD-TYPE" "CDH10 WILD-TYPE" 
     TCGA-50-5939      TCGA-50-5941      TCGA-50-5942      TCGA-50-5944 
"CDH10 WILD-TYPE" "CDH10 WILD-TYPE"   "CDH10 MUTATED" "CDH10 WILD-TYPE" 
     TCGA-50-5946      TCGA-50-6590      TCGA-50-6591      TCGA-50-6592 
"CDH10 WILD-TYPE"   "CDH10 MUTATED" "CDH10 WILD-TYPE" "CDH10 WILD-TYPE" 
     TCGA-50-6593      TCGA-50-6594      TCGA-50-6595      TCGA-50-6597 
  "CDH10 MUTATED" "CDH10 WILD-TYPE" "CDH10 WILD-TYPE" "CDH10 WILD-TYPE" 
     TCGA-55-1592      TCGA-55-1594      TCGA-55-1595      TCGA-55-1596 
"CDH10 WILD-TYPE" "CDH10 WILD-TYPE" "CDH10 WILD-TYPE" "CDH10 WILD-TYPE" 
     TCGA-55-5899      TCGA-55-6543      TCGA-55-6642      TCGA-55-6712 
"CDH10 WILD-TYPE" "CDH10 WILD-TYPE" "CDH10 WILD-TYPE" "CDH10 WILD-TYPE" 
     TCGA-64-1676      TCGA-64-1677      TCGA-64-1678      TCGA-64-1680 
"CDH10 WILD-TYPE" "CDH10 WILD-TYPE" "CDH10 WILD-TYPE" "CDH10 WILD-TYPE" 
     TCGA-64-5774      TCGA-64-5775      TCGA-64-5778      TCGA-64-5779 
  "CDH10 MUTATED" "CDH10 WILD-TYPE"   "CDH10 MUTATED" "CDH10 WILD-TYPE" 
     TCGA-64-5781      TCGA-64-5815      TCGA-67-3770      TCGA-67-3771 
  "CDH10 MUTATED" "CDH10 WILD-TYPE"   "CDH10 MUTATED"   "CDH10 MUTATED" 
     TCGA-67-3772      TCGA-67-3773      TCGA-67-3774      TCGA-67-6215 
"CDH10 WILD-TYPE" "CDH10 WILD-TYPE" "CDH10 WILD-TYPE" "CDH10 WILD-TYPE" 
     TCGA-67-6216      TCGA-67-6217      TCGA-71-6725      TCGA-73-4658 
"CDH10 WILD-TYPE" "CDH10 WILD-TYPE" "CDH10 WILD-TYPE"   "CDH10 MUTATED" 
     TCGA-73-4659      TCGA-73-4662      TCGA-73-4666      TCGA-73-4668 
"CDH10 WILD-TYPE" "CDH10 WILD-TYPE" "CDH10 WILD-TYPE" "CDH10 WILD-TYPE" 
     TCGA-73-4670      TCGA-73-4675      TCGA-73-4676      TCGA-73-4677 
"CDH10 WILD-TYPE" "CDH10 WILD-TYPE" "CDH10 WILD-TYPE" "CDH10 WILD-TYPE" 
     TCGA-91-6828      TCGA-91-6829      TCGA-91-6831      TCGA-91-6835 
  "CDH10 MUTATED" "CDH10 WILD-TYPE"   "CDH10 MUTATED"   "CDH10 MUTATED" 
     TCGA-91-6836 
"CDH10 WILD-TYPE" 
[1] "hr=" "1.9"
D7V2, continuous
D7V3, binary
[1] "tbl2"
                 cls
clus              [,1] [,2]
  CDH10 MUTATED     20   13
  CDH10 WILD-TYPE   73   66
        clus
vv       CDH10 MUTATED CDH10 WILD-TYPE
  FEMALE            20              73
  MALE              13              66
D7V4, continuous
[1] "Remove cluster labels:" "CDH10 MUTATED"         
clus
  CDH10 MUTATED CDH10 WILD-TYPE 
              1              11 
     TCGA-35-4122      TCGA-35-4123      TCGA-35-5375      TCGA-64-1677 
"CDH10 WILD-TYPE" "CDH10 WILD-TYPE" "CDH10 WILD-TYPE" "CDH10 WILD-TYPE" 
     TCGA-71-6725      TCGA-73-4659      TCGA-73-4662      TCGA-73-4666 
"CDH10 WILD-TYPE" "CDH10 WILD-TYPE" "CDH10 WILD-TYPE" "CDH10 WILD-TYPE" 
     TCGA-73-4668      TCGA-73-4676      TCGA-75-5122 
"CDH10 WILD-TYPE" "CDH10 WILD-TYPE" "CDH10 WILD-TYPE" 
D7V5, multiclass
D7V6, multiclass
    clus
vv   CDH10 MUTATED CDH10 WILD-TYPE
  T1            12              29
  T2            17              91
  T3             1              13
  T4             3               5
D7V7, multiclass
       clus
vv      CDH10 MUTATED CDH10 WILD-TYPE
  N0               23              72
  N1                4              33
  N2+N3             5              30
D7V8, multiclass
    clus
vv   CDH10 MUTATED CDH10 WILD-TYPE
  M0            27             110
  M1             0               9
  MX             6              16
D7V9, multiclass
     clus
vv    CDH10 MUTATED CDH10 WILD-TYPE
  I              23              65
  II              3              30
  III             6              33
  IV              0               9
D7V10, binary
[1] "tbl2"
                 cls
clus              [,1] [,2]
  CDH10 MUTATED      3   30
  CDH10 WILD-TYPE   13  126
     clus
vv    CDH10 MUTATED CDH10 WILD-TYPE
  NO              3              13
  YES            30             126
D7V11, continuous
D7V12, continuous
D7V13, multiclass
                                             clus
vv                                            CDH10 MUTATED CDH10 WILD-TYPE
  CURRENT REFORMED SMOKER FOR < OR = 15 YEARS            18              44
  CURRENT REFORMED SMOKER FOR > 15 YEARS                  8              38
  CURRENT SMOKER                                          2              26
  LIFELONG NON-SMOKER                                     2              22
D7V14, continuous

Clustering(8) Variable = TMTC1 MUTATION ANALYSIS
D8V1, survival
                 sevent
clus2              0  1
  TMTC1 MUTATED   14  5
  TMTC1 WILD-TYPE 85 45
  TMTC1 MUTATED TMTC1 WILD-TYPE 
             19             130 
  TMTC1 MUTATED TMTC1 WILD-TYPE 
              5              45 
$`TMTC1 MUTATED`
TCGA-05-4250 TCGA-05-4390 TCGA-05-4396 TCGA-05-4398 TCGA-05-4415 TCGA-05-4420 
        3.98        37.02         9.96        47.05         2.96        29.95 
TCGA-05-4427 TCGA-05-4430 TCGA-38-4625 TCGA-44-3918 TCGA-50-5045 TCGA-50-5941 
       26.01        25.02        47.61         6.44        71.47         9.37 
TCGA-50-5942 TCGA-64-5779 TCGA-64-5781 TCGA-67-3771 TCGA-73-4668 TCGA-73-4670 
        4.44        16.67        39.52         1.97        15.35         0.46 
TCGA-91-6829 
       41.33 

$`TMTC1 WILD-TYPE`
TCGA-05-4249 TCGA-05-4382 TCGA-05-4384 TCGA-05-4397 TCGA-05-4402 TCGA-05-4405 
       38.07        19.92        14.01        24.03         8.02        20.05 
TCGA-05-4417 TCGA-05-4418 TCGA-05-4424 TCGA-05-4426 TCGA-05-4432 TCGA-05-4433 
       14.93         8.98        30.02        26.01        25.02        24.00 
TCGA-05-4434 TCGA-05-5420 TCGA-05-5423 TCGA-05-5425 TCGA-05-5429 TCGA-05-5715 
       15.02         1.02         4.96         2.96         0.99         2.04 
TCGA-35-3615 TCGA-35-4122 TCGA-35-4123 TCGA-35-5375 TCGA-38-4626 TCGA-38-4627 
        0.46         7.36         5.95         8.68        85.32        37.71 
TCGA-38-4628 TCGA-38-4629 TCGA-38-4630 TCGA-38-4631 TCGA-38-4632 TCGA-38-6178 
       49.02        28.37        35.28        11.64        44.61         5.19 
TCGA-44-2655 TCGA-44-2656 TCGA-44-2657 TCGA-44-2659 TCGA-44-2661 TCGA-44-2662 
       18.87        19.10        13.15        17.39         3.39        15.78 
TCGA-44-2665 TCGA-44-2666 TCGA-44-2668 TCGA-44-3396 TCGA-44-3398 TCGA-44-3919 
       13.15         3.19         8.09        10.22         8.32         6.21 
TCGA-44-4112 TCGA-44-5643 TCGA-44-5645 TCGA-44-6144 TCGA-44-6145 TCGA-44-6146 
        4.60         3.48         6.84         0.30         3.35         9.93 
TCGA-44-6147 TCGA-44-6148 TCGA-44-6774 TCGA-44-6775 TCGA-44-6776 TCGA-44-6777 
        7.76         3.12         5.42         2.70        63.72        32.45 
TCGA-44-6778 TCGA-44-6779 TCGA-49-4486 TCGA-49-4487 TCGA-49-4488 TCGA-49-4490 
       36.49        16.41        76.21        28.11        28.57        12.66 
TCGA-49-4494 TCGA-49-4501 TCGA-49-4505 TCGA-49-4506 TCGA-49-4507 TCGA-49-4510 
       35.54        46.72        14.07        32.84         8.81        29.46 
TCGA-49-4512 TCGA-49-4514 TCGA-49-6742 TCGA-49-6743 TCGA-49-6744 TCGA-49-6745 
       29.75        43.20        15.02        12.13        12.99         4.93 
TCGA-50-5044 TCGA-50-5049 TCGA-50-5051 TCGA-50-5055 TCGA-50-5066 TCGA-50-5068 
       20.48        48.82        14.96        25.81         9.76        49.28 
TCGA-50-5072 TCGA-50-5930 TCGA-50-5931 TCGA-50-5932 TCGA-50-5933 TCGA-50-5935 
        8.05         9.27         8.78        35.87        77.88        21.47 
TCGA-50-5936 TCGA-50-5939 TCGA-50-5944 TCGA-50-5946 TCGA-50-6590 TCGA-50-6591 
        8.45        15.12        12.26        11.47        42.31         3.88 
TCGA-50-6592 TCGA-50-6593 TCGA-50-6594 TCGA-50-6595 TCGA-50-6597 TCGA-55-1592 
       25.51        11.05        12.16         6.21        33.37        23.05 
TCGA-55-1594 TCGA-55-1595 TCGA-55-1596 TCGA-55-5899 TCGA-55-6543 TCGA-55-6642 
       38.73        48.62        45.17         2.86         0.07        32.61 
TCGA-55-6712 TCGA-64-1676 TCGA-64-1677 TCGA-64-1678 TCGA-64-1680 TCGA-64-5774 
        0.79        56.81        20.65        39.09        37.02        83.84 
TCGA-64-5775 TCGA-64-5778 TCGA-64-5815 TCGA-67-3770 TCGA-67-3772 TCGA-67-3773 
        0.10        30.44         7.33         0.99         0.59         2.04 
TCGA-67-3774 TCGA-67-6215 TCGA-67-6216 TCGA-67-6217 TCGA-71-6725 TCGA-73-4658 
        0.59         0.89         0.69        13.87         2.01        52.57 
TCGA-73-4659 TCGA-73-4662 TCGA-73-4666 TCGA-73-4675 TCGA-73-4676 TCGA-73-4677 
       23.38        29.95        20.28         1.32         4.01         1.25 
TCGA-91-6828 TCGA-91-6831 TCGA-91-6835 TCGA-91-6836 
        1.22         1.28         1.15         0.36 

  TMTC1 MUTATED TMTC1 WILD-TYPE 
           0.46            0.07 
  TMTC1 MUTATED TMTC1 WILD-TYPE 
          71.47           85.32 
  TMTC1 MUTATED TMTC1 WILD-TYPE 
          16.67           13.15 
[1] "0.5 - 71.5 (16.7)" "0.1 - 85.3 (13.2)"
     TCGA-05-4249      TCGA-05-4250      TCGA-05-4382      TCGA-05-4384 
"TMTC1 WILD-TYPE"   "TMTC1 MUTATED" "TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE" 
     TCGA-05-4390      TCGA-05-4396      TCGA-05-4397      TCGA-05-4398 
  "TMTC1 MUTATED"   "TMTC1 MUTATED" "TMTC1 WILD-TYPE"   "TMTC1 MUTATED" 
     TCGA-05-4402      TCGA-05-4405      TCGA-05-4415      TCGA-05-4417 
"TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE"   "TMTC1 MUTATED" "TMTC1 WILD-TYPE" 
     TCGA-05-4418      TCGA-05-4420      TCGA-05-4424      TCGA-05-4426 
"TMTC1 WILD-TYPE"   "TMTC1 MUTATED" "TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE" 
     TCGA-05-4427      TCGA-05-4430      TCGA-05-4432      TCGA-05-4433 
  "TMTC1 MUTATED"   "TMTC1 MUTATED" "TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE" 
     TCGA-05-4434      TCGA-05-5420      TCGA-05-5423      TCGA-05-5425 
"TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE" 
     TCGA-05-5429      TCGA-05-5715      TCGA-35-3615      TCGA-35-4122 
"TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE" 
     TCGA-35-4123      TCGA-35-5375      TCGA-38-4625      TCGA-38-4626 
"TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE"   "TMTC1 MUTATED" "TMTC1 WILD-TYPE" 
     TCGA-38-4627      TCGA-38-4628      TCGA-38-4629      TCGA-38-4630 
"TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE" 
     TCGA-38-4631      TCGA-38-4632      TCGA-38-6178      TCGA-44-2655 
"TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE" 
     TCGA-44-2656      TCGA-44-2657      TCGA-44-2659      TCGA-44-2661 
"TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE" 
     TCGA-44-2662      TCGA-44-2665      TCGA-44-2666      TCGA-44-2668 
"TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE" 
     TCGA-44-3396      TCGA-44-3398      TCGA-44-3918      TCGA-44-3919 
"TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE"   "TMTC1 MUTATED" "TMTC1 WILD-TYPE" 
     TCGA-44-4112      TCGA-44-5643      TCGA-44-5645      TCGA-44-6144 
"TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE" 
     TCGA-44-6145      TCGA-44-6146      TCGA-44-6147      TCGA-44-6148 
"TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE" 
     TCGA-44-6774      TCGA-44-6775      TCGA-44-6776      TCGA-44-6777 
"TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE" 
     TCGA-44-6778      TCGA-44-6779      TCGA-49-4486      TCGA-49-4487 
"TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE" 
     TCGA-49-4488      TCGA-49-4490      TCGA-49-4494      TCGA-49-4501 
"TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE" 
     TCGA-49-4505      TCGA-49-4506      TCGA-49-4507      TCGA-49-4510 
"TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE" 
     TCGA-49-4512      TCGA-49-4514      TCGA-49-6742      TCGA-49-6743 
"TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE" 
     TCGA-49-6744      TCGA-49-6745      TCGA-50-5044      TCGA-50-5045 
"TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE"   "TMTC1 MUTATED" 
     TCGA-50-5049      TCGA-50-5051      TCGA-50-5055      TCGA-50-5066 
"TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE" 
     TCGA-50-5068      TCGA-50-5072      TCGA-50-5930      TCGA-50-5931 
"TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE" 
     TCGA-50-5932      TCGA-50-5933      TCGA-50-5935      TCGA-50-5936 
"TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE" 
     TCGA-50-5939      TCGA-50-5941      TCGA-50-5942      TCGA-50-5944 
"TMTC1 WILD-TYPE"   "TMTC1 MUTATED"   "TMTC1 MUTATED" "TMTC1 WILD-TYPE" 
     TCGA-50-5946      TCGA-50-6590      TCGA-50-6591      TCGA-50-6592 
"TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE" 
     TCGA-50-6593      TCGA-50-6594      TCGA-50-6595      TCGA-50-6597 
"TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE" 
     TCGA-55-1592      TCGA-55-1594      TCGA-55-1595      TCGA-55-1596 
"TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE" 
     TCGA-55-5899      TCGA-55-6543      TCGA-55-6642      TCGA-55-6712 
"TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE" 
     TCGA-64-1676      TCGA-64-1677      TCGA-64-1678      TCGA-64-1680 
"TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE" 
     TCGA-64-5774      TCGA-64-5775      TCGA-64-5778      TCGA-64-5779 
"TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE"   "TMTC1 MUTATED" 
     TCGA-64-5781      TCGA-64-5815      TCGA-67-3770      TCGA-67-3771 
  "TMTC1 MUTATED" "TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE"   "TMTC1 MUTATED" 
     TCGA-67-3772      TCGA-67-3773      TCGA-67-3774      TCGA-67-6215 
"TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE" 
     TCGA-67-6216      TCGA-67-6217      TCGA-71-6725      TCGA-73-4658 
"TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE" 
     TCGA-73-4659      TCGA-73-4662      TCGA-73-4666      TCGA-73-4668 
"TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE"   "TMTC1 MUTATED" 
     TCGA-73-4670      TCGA-73-4675      TCGA-73-4676      TCGA-73-4677 
  "TMTC1 MUTATED" "TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE" 
     TCGA-91-6828      TCGA-91-6829      TCGA-91-6831      TCGA-91-6835 
"TMTC1 WILD-TYPE"   "TMTC1 MUTATED" "TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE" 
     TCGA-91-6836 
"TMTC1 WILD-TYPE" 
     TCGA-05-4249      TCGA-05-4250      TCGA-05-4382      TCGA-05-4384 
"TMTC1 WILD-TYPE"   "TMTC1 MUTATED" "TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE" 
     TCGA-05-4390      TCGA-05-4396      TCGA-05-4397      TCGA-05-4398 
  "TMTC1 MUTATED"   "TMTC1 MUTATED" "TMTC1 WILD-TYPE"   "TMTC1 MUTATED" 
     TCGA-05-4402      TCGA-05-4405      TCGA-05-4415      TCGA-05-4417 
"TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE"   "TMTC1 MUTATED" "TMTC1 WILD-TYPE" 
     TCGA-05-4418      TCGA-05-4420      TCGA-05-4424      TCGA-05-4426 
"TMTC1 WILD-TYPE"   "TMTC1 MUTATED" "TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE" 
     TCGA-05-4427      TCGA-05-4430      TCGA-05-4432      TCGA-05-4433 
  "TMTC1 MUTATED"   "TMTC1 MUTATED" "TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE" 
     TCGA-05-4434      TCGA-05-5420      TCGA-05-5423      TCGA-05-5425 
"TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE" 
     TCGA-05-5429      TCGA-05-5715      TCGA-35-3615      TCGA-35-4122 
"TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE" 
     TCGA-35-4123      TCGA-35-5375      TCGA-38-4625      TCGA-38-4626 
"TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE"   "TMTC1 MUTATED" "TMTC1 WILD-TYPE" 
     TCGA-38-4627      TCGA-38-4628      TCGA-38-4629      TCGA-38-4630 
"TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE" 
     TCGA-38-4631      TCGA-38-4632      TCGA-38-6178      TCGA-44-2655 
"TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE" 
     TCGA-44-2656      TCGA-44-2657      TCGA-44-2659      TCGA-44-2661 
"TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE" 
     TCGA-44-2662      TCGA-44-2665      TCGA-44-2666      TCGA-44-2668 
"TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE" 
     TCGA-44-3396      TCGA-44-3398      TCGA-44-3918      TCGA-44-3919 
"TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE"   "TMTC1 MUTATED" "TMTC1 WILD-TYPE" 
     TCGA-44-4112      TCGA-44-5643      TCGA-44-5645      TCGA-44-6144 
"TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE" 
     TCGA-44-6145      TCGA-44-6146      TCGA-44-6147      TCGA-44-6148 
"TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE" 
     TCGA-44-6774      TCGA-44-6775      TCGA-44-6776      TCGA-44-6777 
"TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE" 
     TCGA-44-6778      TCGA-44-6779      TCGA-49-4486      TCGA-49-4487 
"TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE" 
     TCGA-49-4488      TCGA-49-4490      TCGA-49-4494      TCGA-49-4501 
"TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE" 
     TCGA-49-4505      TCGA-49-4506      TCGA-49-4507      TCGA-49-4510 
"TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE" 
     TCGA-49-4512      TCGA-49-4514      TCGA-49-6742      TCGA-49-6743 
"TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE" 
     TCGA-49-6744      TCGA-49-6745      TCGA-50-5044      TCGA-50-5045 
"TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE"   "TMTC1 MUTATED" 
     TCGA-50-5049      TCGA-50-5051      TCGA-50-5055      TCGA-50-5066 
"TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE" 
     TCGA-50-5068      TCGA-50-5072      TCGA-50-5930      TCGA-50-5931 
"TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE" 
     TCGA-50-5932      TCGA-50-5933      TCGA-50-5935      TCGA-50-5936 
"TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE" 
     TCGA-50-5939      TCGA-50-5941      TCGA-50-5942      TCGA-50-5944 
"TMTC1 WILD-TYPE"   "TMTC1 MUTATED"   "TMTC1 MUTATED" "TMTC1 WILD-TYPE" 
     TCGA-50-5946      TCGA-50-6590      TCGA-50-6591      TCGA-50-6592 
"TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE" 
     TCGA-50-6593      TCGA-50-6594      TCGA-50-6595      TCGA-50-6597 
"TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE" 
     TCGA-55-1592      TCGA-55-1594      TCGA-55-1595      TCGA-55-1596 
"TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE" 
     TCGA-55-5899      TCGA-55-6543      TCGA-55-6642      TCGA-55-6712 
"TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE" 
     TCGA-64-1676      TCGA-64-1677      TCGA-64-1678      TCGA-64-1680 
"TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE" 
     TCGA-64-5774      TCGA-64-5775      TCGA-64-5778      TCGA-64-5779 
"TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE"   "TMTC1 MUTATED" 
     TCGA-64-5781      TCGA-64-5815      TCGA-67-3770      TCGA-67-3771 
  "TMTC1 MUTATED" "TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE"   "TMTC1 MUTATED" 
     TCGA-67-3772      TCGA-67-3773      TCGA-67-3774      TCGA-67-6215 
"TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE" 
     TCGA-67-6216      TCGA-67-6217      TCGA-71-6725      TCGA-73-4658 
"TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE" 
     TCGA-73-4659      TCGA-73-4662      TCGA-73-4666      TCGA-73-4668 
"TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE"   "TMTC1 MUTATED" 
     TCGA-73-4670      TCGA-73-4675      TCGA-73-4676      TCGA-73-4677 
  "TMTC1 MUTATED" "TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE" 
     TCGA-91-6828      TCGA-91-6829      TCGA-91-6831      TCGA-91-6835 
"TMTC1 WILD-TYPE"   "TMTC1 MUTATED" "TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE" 
     TCGA-91-6836 
"TMTC1 WILD-TYPE" 
     TCGA-05-4249      TCGA-05-4250      TCGA-05-4382      TCGA-05-4384 
"TMTC1 WILD-TYPE"   "TMTC1 MUTATED" "TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE" 
     TCGA-05-4390      TCGA-05-4396      TCGA-05-4397      TCGA-05-4398 
  "TMTC1 MUTATED"   "TMTC1 MUTATED" "TMTC1 WILD-TYPE"   "TMTC1 MUTATED" 
     TCGA-05-4402      TCGA-05-4405      TCGA-05-4415      TCGA-05-4417 
"TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE"   "TMTC1 MUTATED" "TMTC1 WILD-TYPE" 
     TCGA-05-4418      TCGA-05-4420      TCGA-05-4424      TCGA-05-4426 
"TMTC1 WILD-TYPE"   "TMTC1 MUTATED" "TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE" 
     TCGA-05-4427      TCGA-05-4430      TCGA-05-4432      TCGA-05-4433 
  "TMTC1 MUTATED"   "TMTC1 MUTATED" "TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE" 
     TCGA-05-4434      TCGA-05-5420      TCGA-05-5423      TCGA-05-5425 
"TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE" 
     TCGA-05-5429      TCGA-05-5715      TCGA-35-3615      TCGA-35-4122 
"TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE" 
     TCGA-35-4123      TCGA-35-5375      TCGA-38-4625      TCGA-38-4626 
"TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE"   "TMTC1 MUTATED" "TMTC1 WILD-TYPE" 
     TCGA-38-4627      TCGA-38-4628      TCGA-38-4629      TCGA-38-4630 
"TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE" 
     TCGA-38-4631      TCGA-38-4632      TCGA-38-6178      TCGA-44-2655 
"TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE" 
     TCGA-44-2656      TCGA-44-2657      TCGA-44-2659      TCGA-44-2661 
"TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE" 
     TCGA-44-2662      TCGA-44-2665      TCGA-44-2666      TCGA-44-2668 
"TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE" 
     TCGA-44-3396      TCGA-44-3398      TCGA-44-3918      TCGA-44-3919 
"TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE"   "TMTC1 MUTATED" "TMTC1 WILD-TYPE" 
     TCGA-44-4112      TCGA-44-5643      TCGA-44-5645      TCGA-44-6144 
"TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE" 
     TCGA-44-6145      TCGA-44-6146      TCGA-44-6147      TCGA-44-6148 
"TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE" 
     TCGA-44-6774      TCGA-44-6775      TCGA-44-6776      TCGA-44-6777 
"TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE" 
     TCGA-44-6778      TCGA-44-6779      TCGA-49-4486      TCGA-49-4487 
"TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE" 
     TCGA-49-4488      TCGA-49-4490      TCGA-49-4494      TCGA-49-4501 
"TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE" 
     TCGA-49-4505      TCGA-49-4506      TCGA-49-4507      TCGA-49-4510 
"TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE" 
     TCGA-49-4512      TCGA-49-4514      TCGA-49-6742      TCGA-49-6743 
"TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE" 
     TCGA-49-6744      TCGA-49-6745      TCGA-50-5044      TCGA-50-5045 
"TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE"   "TMTC1 MUTATED" 
     TCGA-50-5049      TCGA-50-5051      TCGA-50-5055      TCGA-50-5066 
"TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE" 
     TCGA-50-5068      TCGA-50-5072      TCGA-50-5930      TCGA-50-5931 
"TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE" 
     TCGA-50-5932      TCGA-50-5933      TCGA-50-5935      TCGA-50-5936 
"TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE" 
     TCGA-50-5939      TCGA-50-5941      TCGA-50-5942      TCGA-50-5944 
"TMTC1 WILD-TYPE"   "TMTC1 MUTATED"   "TMTC1 MUTATED" "TMTC1 WILD-TYPE" 
     TCGA-50-5946      TCGA-50-6590      TCGA-50-6591      TCGA-50-6592 
"TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE" 
     TCGA-50-6593      TCGA-50-6594      TCGA-50-6595      TCGA-50-6597 
"TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE" 
     TCGA-55-1592      TCGA-55-1594      TCGA-55-1595      TCGA-55-1596 
"TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE" 
     TCGA-55-5899      TCGA-55-6543      TCGA-55-6642      TCGA-55-6712 
"TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE" 
     TCGA-64-1676      TCGA-64-1677      TCGA-64-1678      TCGA-64-1680 
"TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE" 
     TCGA-64-5774      TCGA-64-5775      TCGA-64-5778      TCGA-64-5779 
"TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE"   "TMTC1 MUTATED" 
     TCGA-64-5781      TCGA-64-5815      TCGA-67-3770      TCGA-67-3771 
  "TMTC1 MUTATED" "TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE"   "TMTC1 MUTATED" 
     TCGA-67-3772      TCGA-67-3773      TCGA-67-3774      TCGA-67-6215 
"TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE" 
     TCGA-67-6216      TCGA-67-6217      TCGA-71-6725      TCGA-73-4658 
"TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE" 
     TCGA-73-4659      TCGA-73-4662      TCGA-73-4666      TCGA-73-4668 
"TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE"   "TMTC1 MUTATED" 
     TCGA-73-4670      TCGA-73-4675      TCGA-73-4676      TCGA-73-4677 
  "TMTC1 MUTATED" "TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE" 
     TCGA-91-6828      TCGA-91-6829      TCGA-91-6831      TCGA-91-6835 
"TMTC1 WILD-TYPE"   "TMTC1 MUTATED" "TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE" 
     TCGA-91-6836 
"TMTC1 WILD-TYPE" 
[1] "hr=" "1.6"
D8V2, continuous
D8V3, binary
[1] "tbl2"
                 cls
clus              [,1] [,2]
  TMTC1 MUTATED     16    6
  TMTC1 WILD-TYPE   77   73
        clus
vv       TMTC1 MUTATED TMTC1 WILD-TYPE
  FEMALE            16              77
  MALE               6              73
D8V4, continuous
[1] "Remove cluster labels:" "TMTC1 MUTATED"         
clus
  TMTC1 MUTATED TMTC1 WILD-TYPE 
              1              11 
     TCGA-35-4122      TCGA-35-4123      TCGA-35-5375      TCGA-64-1677 
"TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE" 
     TCGA-64-5778      TCGA-71-6725      TCGA-73-4659      TCGA-73-4662 
"TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE" 
     TCGA-73-4666      TCGA-73-4676      TCGA-75-5122 
"TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE" 
D8V5, multiclass
D8V6, multiclass
    clus
vv   TMTC1 MUTATED TMTC1 WILD-TYPE
  T1             3              38
  T2            14              94
  T3             2              12
  T4             3               5
D8V7, multiclass
       clus
vv      TMTC1 MUTATED TMTC1 WILD-TYPE
  N0               11              84
  N1                6              31
  N2+N3             5              30
D8V8, multiclass
    clus
vv   TMTC1 MUTATED TMTC1 WILD-TYPE
  M0            19             118
  M1             2               7
  MX             1              21
D8V9, multiclass
     clus
vv    TMTC1 MUTATED TMTC1 WILD-TYPE
  I               9              79
  II              3              30
  III             7              32
  IV              2               7
D8V10, binary
[1] "tbl2"
                 cls
clus              [,1] [,2]
  TMTC1 MUTATED      2   20
  TMTC1 WILD-TYPE   14  136
     clus
vv    TMTC1 MUTATED TMTC1 WILD-TYPE
  NO              2              14
  YES            20             136
D8V11, continuous
D8V12, continuous
D8V13, multiclass
                                             clus
vv                                            TMTC1 MUTATED TMTC1 WILD-TYPE
  CURRENT REFORMED SMOKER FOR < OR = 15 YEARS            13              49
  CURRENT REFORMED SMOKER FOR > 15 YEARS                  4              42
  CURRENT SMOKER                                          4              24
  LIFELONG NON-SMOKER                                     0              24
D8V14, continuous

Clustering(9) Variable = MUC7 MUTATION ANALYSIS
D9V1, survival
                sevent
clus2             0  1
  MUC7 MUTATED   11  3
  MUC7 WILD-TYPE 88 47
  MUC7 MUTATED MUC7 WILD-TYPE 
            14            135 
  MUC7 MUTATED MUC7 WILD-TYPE 
             3             47 
$`MUC7 MUTATED`
TCGA-05-4382 TCGA-05-4390 TCGA-05-4424 TCGA-35-4122 TCGA-35-5375 TCGA-44-6778 
       19.92        37.02        30.02         7.36         8.68        36.49 
TCGA-49-4507 TCGA-49-6742 TCGA-50-6593 TCGA-55-1592 TCGA-55-5899 TCGA-64-5774 
        8.81        15.02        11.05        23.05         2.86        83.84 
TCGA-64-5781 TCGA-91-6828 
       39.52         1.22 

$`MUC7 WILD-TYPE`
TCGA-05-4249 TCGA-05-4250 TCGA-05-4384 TCGA-05-4396 TCGA-05-4397 TCGA-05-4398 
       38.07         3.98        14.01         9.96        24.03        47.05 
TCGA-05-4402 TCGA-05-4405 TCGA-05-4415 TCGA-05-4417 TCGA-05-4418 TCGA-05-4420 
        8.02        20.05         2.96        14.93         8.98        29.95 
TCGA-05-4426 TCGA-05-4427 TCGA-05-4430 TCGA-05-4432 TCGA-05-4433 TCGA-05-4434 
       26.01        26.01        25.02        25.02        24.00        15.02 
TCGA-05-5420 TCGA-05-5423 TCGA-05-5425 TCGA-05-5429 TCGA-05-5715 TCGA-35-3615 
        1.02         4.96         2.96         0.99         2.04         0.46 
TCGA-35-4123 TCGA-38-4625 TCGA-38-4626 TCGA-38-4627 TCGA-38-4628 TCGA-38-4629 
        5.95        47.61        85.32        37.71        49.02        28.37 
TCGA-38-4630 TCGA-38-4631 TCGA-38-4632 TCGA-38-6178 TCGA-44-2655 TCGA-44-2656 
       35.28        11.64        44.61         5.19        18.87        19.10 
TCGA-44-2657 TCGA-44-2659 TCGA-44-2661 TCGA-44-2662 TCGA-44-2665 TCGA-44-2666 
       13.15        17.39         3.39        15.78        13.15         3.19 
TCGA-44-2668 TCGA-44-3396 TCGA-44-3398 TCGA-44-3918 TCGA-44-3919 TCGA-44-4112 
        8.09        10.22         8.32         6.44         6.21         4.60 
TCGA-44-5643 TCGA-44-5645 TCGA-44-6144 TCGA-44-6145 TCGA-44-6146 TCGA-44-6147 
        3.48         6.84         0.30         3.35         9.93         7.76 
TCGA-44-6148 TCGA-44-6774 TCGA-44-6775 TCGA-44-6776 TCGA-44-6777 TCGA-44-6779 
        3.12         5.42         2.70        63.72        32.45        16.41 
TCGA-49-4486 TCGA-49-4487 TCGA-49-4488 TCGA-49-4490 TCGA-49-4494 TCGA-49-4501 
       76.21        28.11        28.57        12.66        35.54        46.72 
TCGA-49-4505 TCGA-49-4506 TCGA-49-4510 TCGA-49-4512 TCGA-49-4514 TCGA-49-6743 
       14.07        32.84        29.46        29.75        43.20        12.13 
TCGA-49-6744 TCGA-49-6745 TCGA-50-5044 TCGA-50-5045 TCGA-50-5049 TCGA-50-5051 
       12.99         4.93        20.48        71.47        48.82        14.96 
TCGA-50-5055 TCGA-50-5066 TCGA-50-5068 TCGA-50-5072 TCGA-50-5930 TCGA-50-5931 
       25.81         9.76        49.28         8.05         9.27         8.78 
TCGA-50-5932 TCGA-50-5933 TCGA-50-5935 TCGA-50-5936 TCGA-50-5939 TCGA-50-5941 
       35.87        77.88        21.47         8.45        15.12         9.37 
TCGA-50-5942 TCGA-50-5944 TCGA-50-5946 TCGA-50-6590 TCGA-50-6591 TCGA-50-6592 
        4.44        12.26        11.47        42.31         3.88        25.51 
TCGA-50-6594 TCGA-50-6595 TCGA-50-6597 TCGA-55-1594 TCGA-55-1595 TCGA-55-1596 
       12.16         6.21        33.37        38.73        48.62        45.17 
TCGA-55-6543 TCGA-55-6642 TCGA-55-6712 TCGA-64-1676 TCGA-64-1677 TCGA-64-1678 
        0.07        32.61         0.79        56.81        20.65        39.09 
TCGA-64-1680 TCGA-64-5775 TCGA-64-5778 TCGA-64-5779 TCGA-64-5815 TCGA-67-3770 
       37.02         0.10        30.44        16.67         7.33         0.99 
TCGA-67-3771 TCGA-67-3772 TCGA-67-3773 TCGA-67-3774 TCGA-67-6215 TCGA-67-6216 
        1.97         0.59         2.04         0.59         0.89         0.69 
TCGA-67-6217 TCGA-71-6725 TCGA-73-4658 TCGA-73-4659 TCGA-73-4662 TCGA-73-4666 
       13.87         2.01        52.57        23.38        29.95        20.28 
TCGA-73-4668 TCGA-73-4670 TCGA-73-4675 TCGA-73-4676 TCGA-73-4677 TCGA-91-6829 
       15.35         0.46         1.32         4.01         1.25        41.33 
TCGA-91-6831 TCGA-91-6835 TCGA-91-6836 
        1.28         1.15         0.36 

  MUC7 MUTATED MUC7 WILD-TYPE 
          1.22           0.07 
  MUC7 MUTATED MUC7 WILD-TYPE 
         83.84          85.32 
  MUC7 MUTATED MUC7 WILD-TYPE 
         17.47          13.15 
[1] "1.2 - 83.8 (17.5)" "0.1 - 85.3 (13.2)"
    TCGA-05-4249     TCGA-05-4250     TCGA-05-4382     TCGA-05-4384 
"MUC7 WILD-TYPE" "MUC7 WILD-TYPE"   "MUC7 MUTATED" "MUC7 WILD-TYPE" 
    TCGA-05-4390     TCGA-05-4396     TCGA-05-4397     TCGA-05-4398 
  "MUC7 MUTATED" "MUC7 WILD-TYPE" "MUC7 WILD-TYPE" "MUC7 WILD-TYPE" 
    TCGA-05-4402     TCGA-05-4405     TCGA-05-4415     TCGA-05-4417 
"MUC7 WILD-TYPE" "MUC7 WILD-TYPE" "MUC7 WILD-TYPE" "MUC7 WILD-TYPE" 
    TCGA-05-4418     TCGA-05-4420     TCGA-05-4424     TCGA-05-4426 
"MUC7 WILD-TYPE" "MUC7 WILD-TYPE"   "MUC7 MUTATED" "MUC7 WILD-TYPE" 
    TCGA-05-4427     TCGA-05-4430     TCGA-05-4432     TCGA-05-4433 
"MUC7 WILD-TYPE" "MUC7 WILD-TYPE" "MUC7 WILD-TYPE" "MUC7 WILD-TYPE" 
    TCGA-05-4434     TCGA-05-5420     TCGA-05-5423     TCGA-05-5425 
"MUC7 WILD-TYPE" "MUC7 WILD-TYPE" "MUC7 WILD-TYPE" "MUC7 WILD-TYPE" 
    TCGA-05-5429     TCGA-05-5715     TCGA-35-3615     TCGA-35-4122 
"MUC7 WILD-TYPE" "MUC7 WILD-TYPE" "MUC7 WILD-TYPE"   "MUC7 MUTATED" 
    TCGA-35-4123     TCGA-35-5375     TCGA-38-4625     TCGA-38-4626 
"MUC7 WILD-TYPE"   "MUC7 MUTATED" "MUC7 WILD-TYPE" "MUC7 WILD-TYPE" 
    TCGA-38-4627     TCGA-38-4628     TCGA-38-4629     TCGA-38-4630 
"MUC7 WILD-TYPE" "MUC7 WILD-TYPE" "MUC7 WILD-TYPE" "MUC7 WILD-TYPE" 
    TCGA-38-4631     TCGA-38-4632     TCGA-38-6178     TCGA-44-2655 
"MUC7 WILD-TYPE" "MUC7 WILD-TYPE" "MUC7 WILD-TYPE" "MUC7 WILD-TYPE" 
    TCGA-44-2656     TCGA-44-2657     TCGA-44-2659     TCGA-44-2661 
"MUC7 WILD-TYPE" "MUC7 WILD-TYPE" "MUC7 WILD-TYPE" "MUC7 WILD-TYPE" 
    TCGA-44-2662     TCGA-44-2665     TCGA-44-2666     TCGA-44-2668 
"MUC7 WILD-TYPE" "MUC7 WILD-TYPE" "MUC7 WILD-TYPE" "MUC7 WILD-TYPE" 
    TCGA-44-3396     TCGA-44-3398     TCGA-44-3918     TCGA-44-3919 
"MUC7 WILD-TYPE" "MUC7 WILD-TYPE" "MUC7 WILD-TYPE" "MUC7 WILD-TYPE" 
    TCGA-44-4112     TCGA-44-5643     TCGA-44-5645     TCGA-44-6144 
"MUC7 WILD-TYPE" "MUC7 WILD-TYPE" "MUC7 WILD-TYPE" "MUC7 WILD-TYPE" 
    TCGA-44-6145     TCGA-44-6146     TCGA-44-6147     TCGA-44-6148 
"MUC7 WILD-TYPE" "MUC7 WILD-TYPE" "MUC7 WILD-TYPE" "MUC7 WILD-TYPE" 
    TCGA-44-6774     TCGA-44-6775     TCGA-44-6776     TCGA-44-6777 
"MUC7 WILD-TYPE" "MUC7 WILD-TYPE" "MUC7 WILD-TYPE" "MUC7 WILD-TYPE" 
    TCGA-44-6778     TCGA-44-6779     TCGA-49-4486     TCGA-49-4487 
  "MUC7 MUTATED" "MUC7 WILD-TYPE" "MUC7 WILD-TYPE" "MUC7 WILD-TYPE" 
    TCGA-49-4488     TCGA-49-4490     TCGA-49-4494     TCGA-49-4501 
"MUC7 WILD-TYPE" "MUC7 WILD-TYPE" "MUC7 WILD-TYPE" "MUC7 WILD-TYPE" 
    TCGA-49-4505     TCGA-49-4506     TCGA-49-4507     TCGA-49-4510 
"MUC7 WILD-TYPE" "MUC7 WILD-TYPE"   "MUC7 MUTATED" "MUC7 WILD-TYPE" 
    TCGA-49-4512     TCGA-49-4514     TCGA-49-6742     TCGA-49-6743 
"MUC7 WILD-TYPE" "MUC7 WILD-TYPE"   "MUC7 MUTATED" "MUC7 WILD-TYPE" 
    TCGA-49-6744     TCGA-49-6745     TCGA-50-5044     TCGA-50-5045 
"MUC7 WILD-TYPE" "MUC7 WILD-TYPE" "MUC7 WILD-TYPE" "MUC7 WILD-TYPE" 
    TCGA-50-5049     TCGA-50-5051     TCGA-50-5055     TCGA-50-5066 
"MUC7 WILD-TYPE" "MUC7 WILD-TYPE" "MUC7 WILD-TYPE" "MUC7 WILD-TYPE" 
    TCGA-50-5068     TCGA-50-5072     TCGA-50-5930     TCGA-50-5931 
"MUC7 WILD-TYPE" "MUC7 WILD-TYPE" "MUC7 WILD-TYPE" "MUC7 WILD-TYPE" 
    TCGA-50-5932     TCGA-50-5933     TCGA-50-5935     TCGA-50-5936 
"MUC7 WILD-TYPE" "MUC7 WILD-TYPE" "MUC7 WILD-TYPE" "MUC7 WILD-TYPE" 
    TCGA-50-5939     TCGA-50-5941     TCGA-50-5942     TCGA-50-5944 
"MUC7 WILD-TYPE" "MUC7 WILD-TYPE" "MUC7 WILD-TYPE" "MUC7 WILD-TYPE" 
    TCGA-50-5946     TCGA-50-6590     TCGA-50-6591     TCGA-50-6592 
"MUC7 WILD-TYPE" "MUC7 WILD-TYPE" "MUC7 WILD-TYPE" "MUC7 WILD-TYPE" 
    TCGA-50-6593     TCGA-50-6594     TCGA-50-6595     TCGA-50-6597 
  "MUC7 MUTATED" "MUC7 WILD-TYPE" "MUC7 WILD-TYPE" "MUC7 WILD-TYPE" 
    TCGA-55-1592     TCGA-55-1594     TCGA-55-1595     TCGA-55-1596 
  "MUC7 MUTATED" "MUC7 WILD-TYPE" "MUC7 WILD-TYPE" "MUC7 WILD-TYPE" 
    TCGA-55-5899     TCGA-55-6543     TCGA-55-6642     TCGA-55-6712 
  "MUC7 MUTATED" "MUC7 WILD-TYPE" "MUC7 WILD-TYPE" "MUC7 WILD-TYPE" 
    TCGA-64-1676     TCGA-64-1677     TCGA-64-1678     TCGA-64-1680 
"MUC7 WILD-TYPE" "MUC7 WILD-TYPE" "MUC7 WILD-TYPE" "MUC7 WILD-TYPE" 
    TCGA-64-5774     TCGA-64-5775     TCGA-64-5778     TCGA-64-5779 
  "MUC7 MUTATED" "MUC7 WILD-TYPE" "MUC7 WILD-TYPE" "MUC7 WILD-TYPE" 
    TCGA-64-5781     TCGA-64-5815     TCGA-67-3770     TCGA-67-3771 
  "MUC7 MUTATED" "MUC7 WILD-TYPE" "MUC7 WILD-TYPE" "MUC7 WILD-TYPE" 
    TCGA-67-3772     TCGA-67-3773     TCGA-67-3774     TCGA-67-6215 
"MUC7 WILD-TYPE" "MUC7 WILD-TYPE" "MUC7 WILD-TYPE" "MUC7 WILD-TYPE" 
    TCGA-67-6216     TCGA-67-6217     TCGA-71-6725     TCGA-73-4658 
"MUC7 WILD-TYPE" "MUC7 WILD-TYPE" "MUC7 WILD-TYPE" "MUC7 WILD-TYPE" 
    TCGA-73-4659     TCGA-73-4662     TCGA-73-4666     TCGA-73-4668 
"MUC7 WILD-TYPE" "MUC7 WILD-TYPE" "MUC7 WILD-TYPE" "MUC7 WILD-TYPE" 
    TCGA-73-4670     TCGA-73-4675     TCGA-73-4676     TCGA-73-4677 
"MUC7 WILD-TYPE" "MUC7 WILD-TYPE" "MUC7 WILD-TYPE" "MUC7 WILD-TYPE" 
    TCGA-91-6828     TCGA-91-6829     TCGA-91-6831     TCGA-91-6835 
  "MUC7 MUTATED" "MUC7 WILD-TYPE" "MUC7 WILD-TYPE" "MUC7 WILD-TYPE" 
    TCGA-91-6836 
"MUC7 WILD-TYPE" 
    TCGA-05-4249     TCGA-05-4250     TCGA-05-4382     TCGA-05-4384 
"MUC7 WILD-TYPE" "MUC7 WILD-TYPE"   "MUC7 MUTATED" "MUC7 WILD-TYPE" 
    TCGA-05-4390     TCGA-05-4396     TCGA-05-4397     TCGA-05-4398 
  "MUC7 MUTATED" "MUC7 WILD-TYPE" "MUC7 WILD-TYPE" "MUC7 WILD-TYPE" 
    TCGA-05-4402     TCGA-05-4405     TCGA-05-4415     TCGA-05-4417 
"MUC7 WILD-TYPE" "MUC7 WILD-TYPE" "MUC7 WILD-TYPE" "MUC7 WILD-TYPE" 
    TCGA-05-4418     TCGA-05-4420     TCGA-05-4424     TCGA-05-4426 
"MUC7 WILD-TYPE" "MUC7 WILD-TYPE"   "MUC7 MUTATED" "MUC7 WILD-TYPE" 
    TCGA-05-4427     TCGA-05-4430     TCGA-05-4432     TCGA-05-4433 
"MUC7 WILD-TYPE" "MUC7 WILD-TYPE" "MUC7 WILD-TYPE" "MUC7 WILD-TYPE" 
    TCGA-05-4434     TCGA-05-5420     TCGA-05-5423     TCGA-05-5425 
"MUC7 WILD-TYPE" "MUC7 WILD-TYPE" "MUC7 WILD-TYPE" "MUC7 WILD-TYPE" 
    TCGA-05-5429     TCGA-05-5715     TCGA-35-3615     TCGA-35-4122 
"MUC7 WILD-TYPE" "MUC7 WILD-TYPE" "MUC7 WILD-TYPE"   "MUC7 MUTATED" 
    TCGA-35-4123     TCGA-35-5375     TCGA-38-4625     TCGA-38-4626 
"MUC7 WILD-TYPE"   "MUC7 MUTATED" "MUC7 WILD-TYPE" "MUC7 WILD-TYPE" 
    TCGA-38-4627     TCGA-38-4628     TCGA-38-4629     TCGA-38-4630 
"MUC7 WILD-TYPE" "MUC7 WILD-TYPE" "MUC7 WILD-TYPE" "MUC7 WILD-TYPE" 
    TCGA-38-4631     TCGA-38-4632     TCGA-38-6178     TCGA-44-2655 
"MUC7 WILD-TYPE" "MUC7 WILD-TYPE" "MUC7 WILD-TYPE" "MUC7 WILD-TYPE" 
    TCGA-44-2656     TCGA-44-2657     TCGA-44-2659     TCGA-44-2661 
"MUC7 WILD-TYPE" "MUC7 WILD-TYPE" "MUC7 WILD-TYPE" "MUC7 WILD-TYPE" 
    TCGA-44-2662     TCGA-44-2665     TCGA-44-2666     TCGA-44-2668 
"MUC7 WILD-TYPE" "MUC7 WILD-TYPE" "MUC7 WILD-TYPE" "MUC7 WILD-TYPE" 
    TCGA-44-3396     TCGA-44-3398     TCGA-44-3918     TCGA-44-3919 
"MUC7 WILD-TYPE" "MUC7 WILD-TYPE" "MUC7 WILD-TYPE" "MUC7 WILD-TYPE" 
    TCGA-44-4112     TCGA-44-5643     TCGA-44-5645     TCGA-44-6144 
"MUC7 WILD-TYPE" "MUC7 WILD-TYPE" "MUC7 WILD-TYPE" "MUC7 WILD-TYPE" 
    TCGA-44-6145     TCGA-44-6146     TCGA-44-6147     TCGA-44-6148 
"MUC7 WILD-TYPE" "MUC7 WILD-TYPE" "MUC7 WILD-TYPE" "MUC7 WILD-TYPE" 
    TCGA-44-6774     TCGA-44-6775     TCGA-44-6776     TCGA-44-6777 
"MUC7 WILD-TYPE" "MUC7 WILD-TYPE" "MUC7 WILD-TYPE" "MUC7 WILD-TYPE" 
    TCGA-44-6778     TCGA-44-6779     TCGA-49-4486     TCGA-49-4487 
  "MUC7 MUTATED" "MUC7 WILD-TYPE" "MUC7 WILD-TYPE" "MUC7 WILD-TYPE" 
    TCGA-49-4488     TCGA-49-4490     TCGA-49-4494     TCGA-49-4501 
"MUC7 WILD-TYPE" "MUC7 WILD-TYPE" "MUC7 WILD-TYPE" "MUC7 WILD-TYPE" 
    TCGA-49-4505     TCGA-49-4506     TCGA-49-4507     TCGA-49-4510 
"MUC7 WILD-TYPE" "MUC7 WILD-TYPE"   "MUC7 MUTATED" "MUC7 WILD-TYPE" 
    TCGA-49-4512     TCGA-49-4514     TCGA-49-6742     TCGA-49-6743 
"MUC7 WILD-TYPE" "MUC7 WILD-TYPE"   "MUC7 MUTATED" "MUC7 WILD-TYPE" 
    TCGA-49-6744     TCGA-49-6745     TCGA-50-5044     TCGA-50-5045 
"MUC7 WILD-TYPE" "MUC7 WILD-TYPE" "MUC7 WILD-TYPE" "MUC7 WILD-TYPE" 
    TCGA-50-5049     TCGA-50-5051     TCGA-50-5055     TCGA-50-5066 
"MUC7 WILD-TYPE" "MUC7 WILD-TYPE" "MUC7 WILD-TYPE" "MUC7 WILD-TYPE" 
    TCGA-50-5068     TCGA-50-5072     TCGA-50-5930     TCGA-50-5931 
"MUC7 WILD-TYPE" "MUC7 WILD-TYPE" "MUC7 WILD-TYPE" "MUC7 WILD-TYPE" 
    TCGA-50-5932     TCGA-50-5933     TCGA-50-5935     TCGA-50-5936 
"MUC7 WILD-TYPE" "MUC7 WILD-TYPE" "MUC7 WILD-TYPE" "MUC7 WILD-TYPE" 
    TCGA-50-5939     TCGA-50-5941     TCGA-50-5942     TCGA-50-5944 
"MUC7 WILD-TYPE" "MUC7 WILD-TYPE" "MUC7 WILD-TYPE" "MUC7 WILD-TYPE" 
    TCGA-50-5946     TCGA-50-6590     TCGA-50-6591     TCGA-50-6592 
"MUC7 WILD-TYPE" "MUC7 WILD-TYPE" "MUC7 WILD-TYPE" "MUC7 WILD-TYPE" 
    TCGA-50-6593     TCGA-50-6594     TCGA-50-6595     TCGA-50-6597 
  "MUC7 MUTATED" "MUC7 WILD-TYPE" "MUC7 WILD-TYPE" "MUC7 WILD-TYPE" 
    TCGA-55-1592     TCGA-55-1594     TCGA-55-1595     TCGA-55-1596 
  "MUC7 MUTATED" "MUC7 WILD-TYPE" "MUC7 WILD-TYPE" "MUC7 WILD-TYPE" 
    TCGA-55-5899     TCGA-55-6543     TCGA-55-6642     TCGA-55-6712 
  "MUC7 MUTATED" "MUC7 WILD-TYPE" "MUC7 WILD-TYPE" "MUC7 WILD-TYPE" 
    TCGA-64-1676     TCGA-64-1677     TCGA-64-1678     TCGA-64-1680 
"MUC7 WILD-TYPE" "MUC7 WILD-TYPE" "MUC7 WILD-TYPE" "MUC7 WILD-TYPE" 
    TCGA-64-5774     TCGA-64-5775     TCGA-64-5778     TCGA-64-5779 
  "MUC7 MUTATED" "MUC7 WILD-TYPE" "MUC7 WILD-TYPE" "MUC7 WILD-TYPE" 
    TCGA-64-5781     TCGA-64-5815     TCGA-67-3770     TCGA-67-3771 
  "MUC7 MUTATED" "MUC7 WILD-TYPE" "MUC7 WILD-TYPE" "MUC7 WILD-TYPE" 
    TCGA-67-3772     TCGA-67-3773     TCGA-67-3774     TCGA-67-6215 
"MUC7 WILD-TYPE" "MUC7 WILD-TYPE" "MUC7 WILD-TYPE" "MUC7 WILD-TYPE" 
    TCGA-67-6216     TCGA-67-6217     TCGA-71-6725     TCGA-73-4658 
"MUC7 WILD-TYPE" "MUC7 WILD-TYPE" "MUC7 WILD-TYPE" "MUC7 WILD-TYPE" 
    TCGA-73-4659     TCGA-73-4662     TCGA-73-4666     TCGA-73-4668 
"MUC7 WILD-TYPE" "MUC7 WILD-TYPE" "MUC7 WILD-TYPE" "MUC7 WILD-TYPE" 
    TCGA-73-4670     TCGA-73-4675     TCGA-73-4676     TCGA-73-4677 
"MUC7 WILD-TYPE" "MUC7 WILD-TYPE" "MUC7 WILD-TYPE" "MUC7 WILD-TYPE" 
    TCGA-91-6828     TCGA-91-6829     TCGA-91-6831     TCGA-91-6835 
  "MUC7 MUTATED" "MUC7 WILD-TYPE" "MUC7 WILD-TYPE" "MUC7 WILD-TYPE" 
    TCGA-91-6836 
"MUC7 WILD-TYPE" 
    TCGA-05-4249     TCGA-05-4250     TCGA-05-4382     TCGA-05-4384 
"MUC7 WILD-TYPE" "MUC7 WILD-TYPE"   "MUC7 MUTATED" "MUC7 WILD-TYPE" 
    TCGA-05-4390     TCGA-05-4396     TCGA-05-4397     TCGA-05-4398 
  "MUC7 MUTATED" "MUC7 WILD-TYPE" "MUC7 WILD-TYPE" "MUC7 WILD-TYPE" 
    TCGA-05-4402     TCGA-05-4405     TCGA-05-4415     TCGA-05-4417 
"MUC7 WILD-TYPE" "MUC7 WILD-TYPE" "MUC7 WILD-TYPE" "MUC7 WILD-TYPE" 
    TCGA-05-4418     TCGA-05-4420     TCGA-05-4424     TCGA-05-4426 
"MUC7 WILD-TYPE" "MUC7 WILD-TYPE"   "MUC7 MUTATED" "MUC7 WILD-TYPE" 
    TCGA-05-4427     TCGA-05-4430     TCGA-05-4432     TCGA-05-4433 
"MUC7 WILD-TYPE" "MUC7 WILD-TYPE" "MUC7 WILD-TYPE" "MUC7 WILD-TYPE" 
    TCGA-05-4434     TCGA-05-5420     TCGA-05-5423     TCGA-05-5425 
"MUC7 WILD-TYPE" "MUC7 WILD-TYPE" "MUC7 WILD-TYPE" "MUC7 WILD-TYPE" 
    TCGA-05-5429     TCGA-05-5715     TCGA-35-3615     TCGA-35-4122 
"MUC7 WILD-TYPE" "MUC7 WILD-TYPE" "MUC7 WILD-TYPE"   "MUC7 MUTATED" 
    TCGA-35-4123     TCGA-35-5375     TCGA-38-4625     TCGA-38-4626 
"MUC7 WILD-TYPE"   "MUC7 MUTATED" "MUC7 WILD-TYPE" "MUC7 WILD-TYPE" 
    TCGA-38-4627     TCGA-38-4628     TCGA-38-4629     TCGA-38-4630 
"MUC7 WILD-TYPE" "MUC7 WILD-TYPE" "MUC7 WILD-TYPE" "MUC7 WILD-TYPE" 
    TCGA-38-4631     TCGA-38-4632     TCGA-38-6178     TCGA-44-2655 
"MUC7 WILD-TYPE" "MUC7 WILD-TYPE" "MUC7 WILD-TYPE" "MUC7 WILD-TYPE" 
    TCGA-44-2656     TCGA-44-2657     TCGA-44-2659     TCGA-44-2661 
"MUC7 WILD-TYPE" "MUC7 WILD-TYPE" "MUC7 WILD-TYPE" "MUC7 WILD-TYPE" 
    TCGA-44-2662     TCGA-44-2665     TCGA-44-2666     TCGA-44-2668 
"MUC7 WILD-TYPE" "MUC7 WILD-TYPE" "MUC7 WILD-TYPE" "MUC7 WILD-TYPE" 
    TCGA-44-3396     TCGA-44-3398     TCGA-44-3918     TCGA-44-3919 
"MUC7 WILD-TYPE" "MUC7 WILD-TYPE" "MUC7 WILD-TYPE" "MUC7 WILD-TYPE" 
    TCGA-44-4112     TCGA-44-5643     TCGA-44-5645     TCGA-44-6144 
"MUC7 WILD-TYPE" "MUC7 WILD-TYPE" "MUC7 WILD-TYPE" "MUC7 WILD-TYPE" 
    TCGA-44-6145     TCGA-44-6146     TCGA-44-6147     TCGA-44-6148 
"MUC7 WILD-TYPE" "MUC7 WILD-TYPE" "MUC7 WILD-TYPE" "MUC7 WILD-TYPE" 
    TCGA-44-6774     TCGA-44-6775     TCGA-44-6776     TCGA-44-6777 
"MUC7 WILD-TYPE" "MUC7 WILD-TYPE" "MUC7 WILD-TYPE" "MUC7 WILD-TYPE" 
    TCGA-44-6778     TCGA-44-6779     TCGA-49-4486     TCGA-49-4487 
  "MUC7 MUTATED" "MUC7 WILD-TYPE" "MUC7 WILD-TYPE" "MUC7 WILD-TYPE" 
    TCGA-49-4488     TCGA-49-4490     TCGA-49-4494     TCGA-49-4501 
"MUC7 WILD-TYPE" "MUC7 WILD-TYPE" "MUC7 WILD-TYPE" "MUC7 WILD-TYPE" 
    TCGA-49-4505     TCGA-49-4506     TCGA-49-4507     TCGA-49-4510 
"MUC7 WILD-TYPE" "MUC7 WILD-TYPE"   "MUC7 MUTATED" "MUC7 WILD-TYPE" 
    TCGA-49-4512     TCGA-49-4514     TCGA-49-6742     TCGA-49-6743 
"MUC7 WILD-TYPE" "MUC7 WILD-TYPE"   "MUC7 MUTATED" "MUC7 WILD-TYPE" 
    TCGA-49-6744     TCGA-49-6745     TCGA-50-5044     TCGA-50-5045 
"MUC7 WILD-TYPE" "MUC7 WILD-TYPE" "MUC7 WILD-TYPE" "MUC7 WILD-TYPE" 
    TCGA-50-5049     TCGA-50-5051     TCGA-50-5055     TCGA-50-5066 
"MUC7 WILD-TYPE" "MUC7 WILD-TYPE" "MUC7 WILD-TYPE" "MUC7 WILD-TYPE" 
    TCGA-50-5068     TCGA-50-5072     TCGA-50-5930     TCGA-50-5931 
"MUC7 WILD-TYPE" "MUC7 WILD-TYPE" "MUC7 WILD-TYPE" "MUC7 WILD-TYPE" 
    TCGA-50-5932     TCGA-50-5933     TCGA-50-5935     TCGA-50-5936 
"MUC7 WILD-TYPE" "MUC7 WILD-TYPE" "MUC7 WILD-TYPE" "MUC7 WILD-TYPE" 
    TCGA-50-5939     TCGA-50-5941     TCGA-50-5942     TCGA-50-5944 
"MUC7 WILD-TYPE" "MUC7 WILD-TYPE" "MUC7 WILD-TYPE" "MUC7 WILD-TYPE" 
    TCGA-50-5946     TCGA-50-6590     TCGA-50-6591     TCGA-50-6592 
"MUC7 WILD-TYPE" "MUC7 WILD-TYPE" "MUC7 WILD-TYPE" "MUC7 WILD-TYPE" 
    TCGA-50-6593     TCGA-50-6594     TCGA-50-6595     TCGA-50-6597 
  "MUC7 MUTATED" "MUC7 WILD-TYPE" "MUC7 WILD-TYPE" "MUC7 WILD-TYPE" 
    TCGA-55-1592     TCGA-55-1594     TCGA-55-1595     TCGA-55-1596 
  "MUC7 MUTATED" "MUC7 WILD-TYPE" "MUC7 WILD-TYPE" "MUC7 WILD-TYPE" 
    TCGA-55-5899     TCGA-55-6543     TCGA-55-6642     TCGA-55-6712 
  "MUC7 MUTATED" "MUC7 WILD-TYPE" "MUC7 WILD-TYPE" "MUC7 WILD-TYPE" 
    TCGA-64-1676     TCGA-64-1677     TCGA-64-1678     TCGA-64-1680 
"MUC7 WILD-TYPE" "MUC7 WILD-TYPE" "MUC7 WILD-TYPE" "MUC7 WILD-TYPE" 
    TCGA-64-5774     TCGA-64-5775     TCGA-64-5778     TCGA-64-5779 
  "MUC7 MUTATED" "MUC7 WILD-TYPE" "MUC7 WILD-TYPE" "MUC7 WILD-TYPE" 
    TCGA-64-5781     TCGA-64-5815     TCGA-67-3770     TCGA-67-3771 
  "MUC7 MUTATED" "MUC7 WILD-TYPE" "MUC7 WILD-TYPE" "MUC7 WILD-TYPE" 
    TCGA-67-3772     TCGA-67-3773     TCGA-67-3774     TCGA-67-6215 
"MUC7 WILD-TYPE" "MUC7 WILD-TYPE" "MUC7 WILD-TYPE" "MUC7 WILD-TYPE" 
    TCGA-67-6216     TCGA-67-6217     TCGA-71-6725     TCGA-73-4658 
"MUC7 WILD-TYPE" "MUC7 WILD-TYPE" "MUC7 WILD-TYPE" "MUC7 WILD-TYPE" 
    TCGA-73-4659     TCGA-73-4662     TCGA-73-4666     TCGA-73-4668 
"MUC7 WILD-TYPE" "MUC7 WILD-TYPE" "MUC7 WILD-TYPE" "MUC7 WILD-TYPE" 
    TCGA-73-4670     TCGA-73-4675     TCGA-73-4676     TCGA-73-4677 
"MUC7 WILD-TYPE" "MUC7 WILD-TYPE" "MUC7 WILD-TYPE" "MUC7 WILD-TYPE" 
    TCGA-91-6828     TCGA-91-6829     TCGA-91-6831     TCGA-91-6835 
  "MUC7 MUTATED" "MUC7 WILD-TYPE" "MUC7 WILD-TYPE" "MUC7 WILD-TYPE" 
    TCGA-91-6836 
"MUC7 WILD-TYPE" 
[1] "hr=" "2"  
D9V2, continuous
D9V3, binary
[1] "tbl2"
                cls
clus             [,1] [,2]
  MUC7 MUTATED      4   11
  MUC7 WILD-TYPE   89   68
        clus
vv       MUC7 MUTATED MUC7 WILD-TYPE
  FEMALE            4             89
  MALE             11             68
D9V4, continuous
[1] "Remove cluster labels:" "MUC7 MUTATED"          
clus
  MUC7 MUTATED MUC7 WILD-TYPE 
             2             10 
    TCGA-35-4123     TCGA-64-1677     TCGA-64-5778     TCGA-71-6725 
"MUC7 WILD-TYPE" "MUC7 WILD-TYPE" "MUC7 WILD-TYPE" "MUC7 WILD-TYPE" 
    TCGA-73-4659     TCGA-73-4662     TCGA-73-4666     TCGA-73-4668 
"MUC7 WILD-TYPE" "MUC7 WILD-TYPE" "MUC7 WILD-TYPE" "MUC7 WILD-TYPE" 
    TCGA-73-4676     TCGA-75-5122 
"MUC7 WILD-TYPE" "MUC7 WILD-TYPE" 
D9V5, multiclass
D9V6, multiclass
    clus
vv   MUC7 MUTATED MUC7 WILD-TYPE
  T1            5             36
  T2            8            100
  T3            2             12
  T4            0              8
D9V7, multiclass
       clus
vv      MUC7 MUTATED MUC7 WILD-TYPE
  N0               9             86
  N1               4             33
  N2+N3            2             33
D9V8, multiclass
    clus
vv   MUC7 MUTATED MUC7 WILD-TYPE
  M0           12            125
  M1            0              9
  MX            3             19
D9V9, multiclass
     clus
vv    MUC7 MUTATED MUC7 WILD-TYPE
  I              9             79
  II             3             30
  III            3             36
  IV             0              9
D9V10, binary
[1] "tbl2"
                cls
clus             [,1] [,2]
  MUC7 MUTATED      1   14
  MUC7 WILD-TYPE   15  142
     clus
vv    MUC7 MUTATED MUC7 WILD-TYPE
  NO             1             15
  YES           14            142
D9V11, continuous
D9V12, continuous
D9V13, multiclass
                                             clus
vv                                            MUC7 MUTATED MUC7 WILD-TYPE
  CURRENT REFORMED SMOKER FOR < OR = 15 YEARS           11             51
  CURRENT REFORMED SMOKER FOR > 15 YEARS                 3             43
  CURRENT SMOKER                                         1             27
  LIFELONG NON-SMOKER                                    0             24
D9V14, continuous

Clustering(10) Variable = ELTD1 MUTATION ANALYSIS
D10V1, survival
                 sevent
clus2              0  1
  ELTD1 MUTATED    5  7
  ELTD1 WILD-TYPE 94 43
  ELTD1 MUTATED ELTD1 WILD-TYPE 
             12             137 
  ELTD1 MUTATED ELTD1 WILD-TYPE 
              7              43 
$`ELTD1 MUTATED`
TCGA-05-4250 TCGA-05-4396 TCGA-05-4427 TCGA-44-2656 TCGA-49-4494 TCGA-49-6743 
        3.98         9.96        26.01        19.10        35.54        12.13 
TCGA-50-5072 TCGA-50-6590 TCGA-50-6594 TCGA-64-1677 TCGA-73-4668 TCGA-91-6829 
        8.05        42.31        12.16        20.65        15.35        41.33 

$`ELTD1 WILD-TYPE`
TCGA-05-4249 TCGA-05-4382 TCGA-05-4384 TCGA-05-4390 TCGA-05-4397 TCGA-05-4398 
       38.07        19.92        14.01        37.02        24.03        47.05 
TCGA-05-4402 TCGA-05-4405 TCGA-05-4415 TCGA-05-4417 TCGA-05-4418 TCGA-05-4420 
        8.02        20.05         2.96        14.93         8.98        29.95 
TCGA-05-4424 TCGA-05-4426 TCGA-05-4430 TCGA-05-4432 TCGA-05-4433 TCGA-05-4434 
       30.02        26.01        25.02        25.02        24.00        15.02 
TCGA-05-5420 TCGA-05-5423 TCGA-05-5425 TCGA-05-5429 TCGA-05-5715 TCGA-35-3615 
        1.02         4.96         2.96         0.99         2.04         0.46 
TCGA-35-4122 TCGA-35-4123 TCGA-35-5375 TCGA-38-4625 TCGA-38-4626 TCGA-38-4627 
        7.36         5.95         8.68        47.61        85.32        37.71 
TCGA-38-4628 TCGA-38-4629 TCGA-38-4630 TCGA-38-4631 TCGA-38-4632 TCGA-38-6178 
       49.02        28.37        35.28        11.64        44.61         5.19 
TCGA-44-2655 TCGA-44-2657 TCGA-44-2659 TCGA-44-2661 TCGA-44-2662 TCGA-44-2665 
       18.87        13.15        17.39         3.39        15.78        13.15 
TCGA-44-2666 TCGA-44-2668 TCGA-44-3396 TCGA-44-3398 TCGA-44-3918 TCGA-44-3919 
        3.19         8.09        10.22         8.32         6.44         6.21 
TCGA-44-4112 TCGA-44-5643 TCGA-44-5645 TCGA-44-6144 TCGA-44-6145 TCGA-44-6146 
        4.60         3.48         6.84         0.30         3.35         9.93 
TCGA-44-6147 TCGA-44-6148 TCGA-44-6774 TCGA-44-6775 TCGA-44-6776 TCGA-44-6777 
        7.76         3.12         5.42         2.70        63.72        32.45 
TCGA-44-6778 TCGA-44-6779 TCGA-49-4486 TCGA-49-4487 TCGA-49-4488 TCGA-49-4490 
       36.49        16.41        76.21        28.11        28.57        12.66 
TCGA-49-4501 TCGA-49-4505 TCGA-49-4506 TCGA-49-4507 TCGA-49-4510 TCGA-49-4512 
       46.72        14.07        32.84         8.81        29.46        29.75 
TCGA-49-4514 TCGA-49-6742 TCGA-49-6744 TCGA-49-6745 TCGA-50-5044 TCGA-50-5045 
       43.20        15.02        12.99         4.93        20.48        71.47 
TCGA-50-5049 TCGA-50-5051 TCGA-50-5055 TCGA-50-5066 TCGA-50-5068 TCGA-50-5930 
       48.82        14.96        25.81         9.76        49.28         9.27 
TCGA-50-5931 TCGA-50-5932 TCGA-50-5933 TCGA-50-5935 TCGA-50-5936 TCGA-50-5939 
        8.78        35.87        77.88        21.47         8.45        15.12 
TCGA-50-5941 TCGA-50-5942 TCGA-50-5944 TCGA-50-5946 TCGA-50-6591 TCGA-50-6592 
        9.37         4.44        12.26        11.47         3.88        25.51 
TCGA-50-6593 TCGA-50-6595 TCGA-50-6597 TCGA-55-1592 TCGA-55-1594 TCGA-55-1595 
       11.05         6.21        33.37        23.05        38.73        48.62 
TCGA-55-1596 TCGA-55-5899 TCGA-55-6543 TCGA-55-6642 TCGA-55-6712 TCGA-64-1676 
       45.17         2.86         0.07        32.61         0.79        56.81 
TCGA-64-1678 TCGA-64-1680 TCGA-64-5774 TCGA-64-5775 TCGA-64-5778 TCGA-64-5779 
       39.09        37.02        83.84         0.10        30.44        16.67 
TCGA-64-5781 TCGA-64-5815 TCGA-67-3770 TCGA-67-3771 TCGA-67-3772 TCGA-67-3773 
       39.52         7.33         0.99         1.97         0.59         2.04 
TCGA-67-3774 TCGA-67-6215 TCGA-67-6216 TCGA-67-6217 TCGA-71-6725 TCGA-73-4658 
        0.59         0.89         0.69        13.87         2.01        52.57 
TCGA-73-4659 TCGA-73-4662 TCGA-73-4666 TCGA-73-4670 TCGA-73-4675 TCGA-73-4676 
       23.38        29.95        20.28         0.46         1.32         4.01 
TCGA-73-4677 TCGA-91-6828 TCGA-91-6831 TCGA-91-6835 TCGA-91-6836 
        1.25         1.22         1.28         1.15         0.36 

  ELTD1 MUTATED ELTD1 WILD-TYPE 
           3.98            0.07 
  ELTD1 MUTATED ELTD1 WILD-TYPE 
          42.31           85.32 
  ELTD1 MUTATED ELTD1 WILD-TYPE 
         17.225          13.150 
[1] "4.0 - 42.3 (17.2)" "0.1 - 85.3 (13.2)"
     TCGA-05-4249      TCGA-05-4250      TCGA-05-4382      TCGA-05-4384 
"ELTD1 WILD-TYPE"   "ELTD1 MUTATED" "ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" 
     TCGA-05-4390      TCGA-05-4396      TCGA-05-4397      TCGA-05-4398 
"ELTD1 WILD-TYPE"   "ELTD1 MUTATED" "ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" 
     TCGA-05-4402      TCGA-05-4405      TCGA-05-4415      TCGA-05-4417 
"ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" 
     TCGA-05-4418      TCGA-05-4420      TCGA-05-4424      TCGA-05-4426 
"ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" 
     TCGA-05-4427      TCGA-05-4430      TCGA-05-4432      TCGA-05-4433 
  "ELTD1 MUTATED" "ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" 
     TCGA-05-4434      TCGA-05-5420      TCGA-05-5423      TCGA-05-5425 
"ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" 
     TCGA-05-5429      TCGA-05-5715      TCGA-35-3615      TCGA-35-4122 
"ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" 
     TCGA-35-4123      TCGA-35-5375      TCGA-38-4625      TCGA-38-4626 
"ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" 
     TCGA-38-4627      TCGA-38-4628      TCGA-38-4629      TCGA-38-4630 
"ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" 
     TCGA-38-4631      TCGA-38-4632      TCGA-38-6178      TCGA-44-2655 
"ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" 
     TCGA-44-2656      TCGA-44-2657      TCGA-44-2659      TCGA-44-2661 
  "ELTD1 MUTATED" "ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" 
     TCGA-44-2662      TCGA-44-2665      TCGA-44-2666      TCGA-44-2668 
"ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" 
     TCGA-44-3396      TCGA-44-3398      TCGA-44-3918      TCGA-44-3919 
"ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" 
     TCGA-44-4112      TCGA-44-5643      TCGA-44-5645      TCGA-44-6144 
"ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" 
     TCGA-44-6145      TCGA-44-6146      TCGA-44-6147      TCGA-44-6148 
"ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" 
     TCGA-44-6774      TCGA-44-6775      TCGA-44-6776      TCGA-44-6777 
"ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" 
     TCGA-44-6778      TCGA-44-6779      TCGA-49-4486      TCGA-49-4487 
"ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" 
     TCGA-49-4488      TCGA-49-4490      TCGA-49-4494      TCGA-49-4501 
"ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE"   "ELTD1 MUTATED" "ELTD1 WILD-TYPE" 
     TCGA-49-4505      TCGA-49-4506      TCGA-49-4507      TCGA-49-4510 
"ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" 
     TCGA-49-4512      TCGA-49-4514      TCGA-49-6742      TCGA-49-6743 
"ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE"   "ELTD1 MUTATED" 
     TCGA-49-6744      TCGA-49-6745      TCGA-50-5044      TCGA-50-5045 
"ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" 
     TCGA-50-5049      TCGA-50-5051      TCGA-50-5055      TCGA-50-5066 
"ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" 
     TCGA-50-5068      TCGA-50-5072      TCGA-50-5930      TCGA-50-5931 
"ELTD1 WILD-TYPE"   "ELTD1 MUTATED" "ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" 
     TCGA-50-5932      TCGA-50-5933      TCGA-50-5935      TCGA-50-5936 
"ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" 
     TCGA-50-5939      TCGA-50-5941      TCGA-50-5942      TCGA-50-5944 
"ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" 
     TCGA-50-5946      TCGA-50-6590      TCGA-50-6591      TCGA-50-6592 
"ELTD1 WILD-TYPE"   "ELTD1 MUTATED" "ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" 
     TCGA-50-6593      TCGA-50-6594      TCGA-50-6595      TCGA-50-6597 
"ELTD1 WILD-TYPE"   "ELTD1 MUTATED" "ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" 
     TCGA-55-1592      TCGA-55-1594      TCGA-55-1595      TCGA-55-1596 
"ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" 
     TCGA-55-5899      TCGA-55-6543      TCGA-55-6642      TCGA-55-6712 
"ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" 
     TCGA-64-1676      TCGA-64-1677      TCGA-64-1678      TCGA-64-1680 
"ELTD1 WILD-TYPE"   "ELTD1 MUTATED" "ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" 
     TCGA-64-5774      TCGA-64-5775      TCGA-64-5778      TCGA-64-5779 
"ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" 
     TCGA-64-5781      TCGA-64-5815      TCGA-67-3770      TCGA-67-3771 
"ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" 
     TCGA-67-3772      TCGA-67-3773      TCGA-67-3774      TCGA-67-6215 
"ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" 
     TCGA-67-6216      TCGA-67-6217      TCGA-71-6725      TCGA-73-4658 
"ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" 
     TCGA-73-4659      TCGA-73-4662      TCGA-73-4666      TCGA-73-4668 
"ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE"   "ELTD1 MUTATED" 
     TCGA-73-4670      TCGA-73-4675      TCGA-73-4676      TCGA-73-4677 
"ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" 
     TCGA-91-6828      TCGA-91-6829      TCGA-91-6831      TCGA-91-6835 
"ELTD1 WILD-TYPE"   "ELTD1 MUTATED" "ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" 
     TCGA-91-6836 
"ELTD1 WILD-TYPE" 
     TCGA-05-4249      TCGA-05-4250      TCGA-05-4382      TCGA-05-4384 
"ELTD1 WILD-TYPE"   "ELTD1 MUTATED" "ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" 
     TCGA-05-4390      TCGA-05-4396      TCGA-05-4397      TCGA-05-4398 
"ELTD1 WILD-TYPE"   "ELTD1 MUTATED" "ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" 
     TCGA-05-4402      TCGA-05-4405      TCGA-05-4415      TCGA-05-4417 
"ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" 
     TCGA-05-4418      TCGA-05-4420      TCGA-05-4424      TCGA-05-4426 
"ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" 
     TCGA-05-4427      TCGA-05-4430      TCGA-05-4432      TCGA-05-4433 
  "ELTD1 MUTATED" "ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" 
     TCGA-05-4434      TCGA-05-5420      TCGA-05-5423      TCGA-05-5425 
"ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" 
     TCGA-05-5429      TCGA-05-5715      TCGA-35-3615      TCGA-35-4122 
"ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" 
     TCGA-35-4123      TCGA-35-5375      TCGA-38-4625      TCGA-38-4626 
"ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" 
     TCGA-38-4627      TCGA-38-4628      TCGA-38-4629      TCGA-38-4630 
"ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" 
     TCGA-38-4631      TCGA-38-4632      TCGA-38-6178      TCGA-44-2655 
"ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" 
     TCGA-44-2656      TCGA-44-2657      TCGA-44-2659      TCGA-44-2661 
  "ELTD1 MUTATED" "ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" 
     TCGA-44-2662      TCGA-44-2665      TCGA-44-2666      TCGA-44-2668 
"ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" 
     TCGA-44-3396      TCGA-44-3398      TCGA-44-3918      TCGA-44-3919 
"ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" 
     TCGA-44-4112      TCGA-44-5643      TCGA-44-5645      TCGA-44-6144 
"ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" 
     TCGA-44-6145      TCGA-44-6146      TCGA-44-6147      TCGA-44-6148 
"ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" 
     TCGA-44-6774      TCGA-44-6775      TCGA-44-6776      TCGA-44-6777 
"ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" 
     TCGA-44-6778      TCGA-44-6779      TCGA-49-4486      TCGA-49-4487 
"ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" 
     TCGA-49-4488      TCGA-49-4490      TCGA-49-4494      TCGA-49-4501 
"ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE"   "ELTD1 MUTATED" "ELTD1 WILD-TYPE" 
     TCGA-49-4505      TCGA-49-4506      TCGA-49-4507      TCGA-49-4510 
"ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" 
     TCGA-49-4512      TCGA-49-4514      TCGA-49-6742      TCGA-49-6743 
"ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE"   "ELTD1 MUTATED" 
     TCGA-49-6744      TCGA-49-6745      TCGA-50-5044      TCGA-50-5045 
"ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" 
     TCGA-50-5049      TCGA-50-5051      TCGA-50-5055      TCGA-50-5066 
"ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" 
     TCGA-50-5068      TCGA-50-5072      TCGA-50-5930      TCGA-50-5931 
"ELTD1 WILD-TYPE"   "ELTD1 MUTATED" "ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" 
     TCGA-50-5932      TCGA-50-5933      TCGA-50-5935      TCGA-50-5936 
"ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" 
     TCGA-50-5939      TCGA-50-5941      TCGA-50-5942      TCGA-50-5944 
"ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" 
     TCGA-50-5946      TCGA-50-6590      TCGA-50-6591      TCGA-50-6592 
"ELTD1 WILD-TYPE"   "ELTD1 MUTATED" "ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" 
     TCGA-50-6593      TCGA-50-6594      TCGA-50-6595      TCGA-50-6597 
"ELTD1 WILD-TYPE"   "ELTD1 MUTATED" "ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" 
     TCGA-55-1592      TCGA-55-1594      TCGA-55-1595      TCGA-55-1596 
"ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" 
     TCGA-55-5899      TCGA-55-6543      TCGA-55-6642      TCGA-55-6712 
"ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" 
     TCGA-64-1676      TCGA-64-1677      TCGA-64-1678      TCGA-64-1680 
"ELTD1 WILD-TYPE"   "ELTD1 MUTATED" "ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" 
     TCGA-64-5774      TCGA-64-5775      TCGA-64-5778      TCGA-64-5779 
"ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" 
     TCGA-64-5781      TCGA-64-5815      TCGA-67-3770      TCGA-67-3771 
"ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" 
     TCGA-67-3772      TCGA-67-3773      TCGA-67-3774      TCGA-67-6215 
"ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" 
     TCGA-67-6216      TCGA-67-6217      TCGA-71-6725      TCGA-73-4658 
"ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" 
     TCGA-73-4659      TCGA-73-4662      TCGA-73-4666      TCGA-73-4668 
"ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE"   "ELTD1 MUTATED" 
     TCGA-73-4670      TCGA-73-4675      TCGA-73-4676      TCGA-73-4677 
"ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" 
     TCGA-91-6828      TCGA-91-6829      TCGA-91-6831      TCGA-91-6835 
"ELTD1 WILD-TYPE"   "ELTD1 MUTATED" "ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" 
     TCGA-91-6836 
"ELTD1 WILD-TYPE" 
     TCGA-05-4249      TCGA-05-4250      TCGA-05-4382      TCGA-05-4384 
"ELTD1 WILD-TYPE"   "ELTD1 MUTATED" "ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" 
     TCGA-05-4390      TCGA-05-4396      TCGA-05-4397      TCGA-05-4398 
"ELTD1 WILD-TYPE"   "ELTD1 MUTATED" "ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" 
     TCGA-05-4402      TCGA-05-4405      TCGA-05-4415      TCGA-05-4417 
"ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" 
     TCGA-05-4418      TCGA-05-4420      TCGA-05-4424      TCGA-05-4426 
"ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" 
     TCGA-05-4427      TCGA-05-4430      TCGA-05-4432      TCGA-05-4433 
  "ELTD1 MUTATED" "ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" 
     TCGA-05-4434      TCGA-05-5420      TCGA-05-5423      TCGA-05-5425 
"ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" 
     TCGA-05-5429      TCGA-05-5715      TCGA-35-3615      TCGA-35-4122 
"ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" 
     TCGA-35-4123      TCGA-35-5375      TCGA-38-4625      TCGA-38-4626 
"ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" 
     TCGA-38-4627      TCGA-38-4628      TCGA-38-4629      TCGA-38-4630 
"ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" 
     TCGA-38-4631      TCGA-38-4632      TCGA-38-6178      TCGA-44-2655 
"ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" 
     TCGA-44-2656      TCGA-44-2657      TCGA-44-2659      TCGA-44-2661 
  "ELTD1 MUTATED" "ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" 
     TCGA-44-2662      TCGA-44-2665      TCGA-44-2666      TCGA-44-2668 
"ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" 
     TCGA-44-3396      TCGA-44-3398      TCGA-44-3918      TCGA-44-3919 
"ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" 
     TCGA-44-4112      TCGA-44-5643      TCGA-44-5645      TCGA-44-6144 
"ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" 
     TCGA-44-6145      TCGA-44-6146      TCGA-44-6147      TCGA-44-6148 
"ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" 
     TCGA-44-6774      TCGA-44-6775      TCGA-44-6776      TCGA-44-6777 
"ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" 
     TCGA-44-6778      TCGA-44-6779      TCGA-49-4486      TCGA-49-4487 
"ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" 
     TCGA-49-4488      TCGA-49-4490      TCGA-49-4494      TCGA-49-4501 
"ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE"   "ELTD1 MUTATED" "ELTD1 WILD-TYPE" 
     TCGA-49-4505      TCGA-49-4506      TCGA-49-4507      TCGA-49-4510 
"ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" 
     TCGA-49-4512      TCGA-49-4514      TCGA-49-6742      TCGA-49-6743 
"ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE"   "ELTD1 MUTATED" 
     TCGA-49-6744      TCGA-49-6745      TCGA-50-5044      TCGA-50-5045 
"ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" 
     TCGA-50-5049      TCGA-50-5051      TCGA-50-5055      TCGA-50-5066 
"ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" 
     TCGA-50-5068      TCGA-50-5072      TCGA-50-5930      TCGA-50-5931 
"ELTD1 WILD-TYPE"   "ELTD1 MUTATED" "ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" 
     TCGA-50-5932      TCGA-50-5933      TCGA-50-5935      TCGA-50-5936 
"ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" 
     TCGA-50-5939      TCGA-50-5941      TCGA-50-5942      TCGA-50-5944 
"ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" 
     TCGA-50-5946      TCGA-50-6590      TCGA-50-6591      TCGA-50-6592 
"ELTD1 WILD-TYPE"   "ELTD1 MUTATED" "ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" 
     TCGA-50-6593      TCGA-50-6594      TCGA-50-6595      TCGA-50-6597 
"ELTD1 WILD-TYPE"   "ELTD1 MUTATED" "ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" 
     TCGA-55-1592      TCGA-55-1594      TCGA-55-1595      TCGA-55-1596 
"ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" 
     TCGA-55-5899      TCGA-55-6543      TCGA-55-6642      TCGA-55-6712 
"ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" 
     TCGA-64-1676      TCGA-64-1677      TCGA-64-1678      TCGA-64-1680 
"ELTD1 WILD-TYPE"   "ELTD1 MUTATED" "ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" 
     TCGA-64-5774      TCGA-64-5775      TCGA-64-5778      TCGA-64-5779 
"ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" 
     TCGA-64-5781      TCGA-64-5815      TCGA-67-3770      TCGA-67-3771 
"ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" 
     TCGA-67-3772      TCGA-67-3773      TCGA-67-3774      TCGA-67-6215 
"ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" 
     TCGA-67-6216      TCGA-67-6217      TCGA-71-6725      TCGA-73-4658 
"ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" 
     TCGA-73-4659      TCGA-73-4662      TCGA-73-4666      TCGA-73-4668 
"ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE"   "ELTD1 MUTATED" 
     TCGA-73-4670      TCGA-73-4675      TCGA-73-4676      TCGA-73-4677 
"ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" 
     TCGA-91-6828      TCGA-91-6829      TCGA-91-6831      TCGA-91-6835 
"ELTD1 WILD-TYPE"   "ELTD1 MUTATED" "ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" 
     TCGA-91-6836 
"ELTD1 WILD-TYPE" 
[1] "hr=" "2"  
D10V2, continuous
D10V3, binary
[1] "tbl2"
                 cls
clus              [,1] [,2]
  ELTD1 MUTATED      9    6
  ELTD1 WILD-TYPE   84   73
        clus
vv       ELTD1 MUTATED ELTD1 WILD-TYPE
  FEMALE             9              84
  MALE               6              73
D10V4, continuous
[1] "Remove cluster labels:" "ELTD1 MUTATED"         
clus
  ELTD1 MUTATED ELTD1 WILD-TYPE 
              2              10 
     TCGA-35-4122      TCGA-35-4123      TCGA-35-5375      TCGA-64-5778 
"ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" 
     TCGA-71-6725      TCGA-73-4659      TCGA-73-4662      TCGA-73-4666 
"ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" 
     TCGA-73-4676      TCGA-75-5122 
"ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" 
D10V5, multiclass
D10V6, multiclass
    clus
vv   ELTD1 MUTATED ELTD1 WILD-TYPE
  T1             1              40
  T2             9              99
  T3             4              10
  T4             1               7
D10V7, multiclass
       clus
vv      ELTD1 MUTATED ELTD1 WILD-TYPE
  N0                5              90
  N1                5              32
  N2+N3             5              30
D10V8, multiclass
    clus
vv   ELTD1 MUTATED ELTD1 WILD-TYPE
  M0            12             125
  M1             0               9
  MX             3              19
D10V9, multiclass
     clus
vv    ELTD1 MUTATED ELTD1 WILD-TYPE
  I               4              84
  II              4              29
  III             7              32
  IV              0               9
D10V10, binary
[1] "tbl2"
                 cls
clus              [,1] [,2]
  ELTD1 MUTATED      1   14
  ELTD1 WILD-TYPE   15  142
     clus
vv    ELTD1 MUTATED ELTD1 WILD-TYPE
  NO              1              15
  YES            14             142
D10V11, continuous
D10V12, continuous
D10V13, multiclass
                                             clus
vv                                            ELTD1 MUTATED ELTD1 WILD-TYPE
  CURRENT REFORMED SMOKER FOR < OR = 15 YEARS             8              54
  CURRENT REFORMED SMOKER FOR > 15 YEARS                  4              42
  CURRENT SMOKER                                          3              25
  LIFELONG NON-SMOKER                                     0              24
D10V14, continuous

Clustering(11) Variable = OR2L3 MUTATION ANALYSIS
D11V1, survival
                 sevent
clus2              0  1
  OR2L3 MUTATED   10  3
  OR2L3 WILD-TYPE 89 47
  OR2L3 MUTATED OR2L3 WILD-TYPE 
             13             136 
  OR2L3 MUTATED OR2L3 WILD-TYPE 
              3              47 
$`OR2L3 MUTATED`
TCGA-05-4250 TCGA-05-4382 TCGA-05-4396 TCGA-05-4427 TCGA-05-4432 TCGA-35-5375 
        3.98        19.92         9.96        26.01        25.02         8.68 
TCGA-44-2656 TCGA-44-2668 TCGA-44-6145 TCGA-55-1596 TCGA-55-6712 TCGA-91-6828 
       19.10         8.09         3.35        45.17         0.79         1.22 
TCGA-91-6829 
       41.33 

$`OR2L3 WILD-TYPE`
TCGA-05-4249 TCGA-05-4384 TCGA-05-4390 TCGA-05-4397 TCGA-05-4398 TCGA-05-4402 
       38.07        14.01        37.02        24.03        47.05         8.02 
TCGA-05-4405 TCGA-05-4415 TCGA-05-4417 TCGA-05-4418 TCGA-05-4420 TCGA-05-4424 
       20.05         2.96        14.93         8.98        29.95        30.02 
TCGA-05-4426 TCGA-05-4430 TCGA-05-4433 TCGA-05-4434 TCGA-05-5420 TCGA-05-5423 
       26.01        25.02        24.00        15.02         1.02         4.96 
TCGA-05-5425 TCGA-05-5429 TCGA-05-5715 TCGA-35-3615 TCGA-35-4122 TCGA-35-4123 
        2.96         0.99         2.04         0.46         7.36         5.95 
TCGA-38-4625 TCGA-38-4626 TCGA-38-4627 TCGA-38-4628 TCGA-38-4629 TCGA-38-4630 
       47.61        85.32        37.71        49.02        28.37        35.28 
TCGA-38-4631 TCGA-38-4632 TCGA-38-6178 TCGA-44-2655 TCGA-44-2657 TCGA-44-2659 
       11.64        44.61         5.19        18.87        13.15        17.39 
TCGA-44-2661 TCGA-44-2662 TCGA-44-2665 TCGA-44-2666 TCGA-44-3396 TCGA-44-3398 
        3.39        15.78        13.15         3.19        10.22         8.32 
TCGA-44-3918 TCGA-44-3919 TCGA-44-4112 TCGA-44-5643 TCGA-44-5645 TCGA-44-6144 
        6.44         6.21         4.60         3.48         6.84         0.30 
TCGA-44-6146 TCGA-44-6147 TCGA-44-6148 TCGA-44-6774 TCGA-44-6775 TCGA-44-6776 
        9.93         7.76         3.12         5.42         2.70        63.72 
TCGA-44-6777 TCGA-44-6778 TCGA-44-6779 TCGA-49-4486 TCGA-49-4487 TCGA-49-4488 
       32.45        36.49        16.41        76.21        28.11        28.57 
TCGA-49-4490 TCGA-49-4494 TCGA-49-4501 TCGA-49-4505 TCGA-49-4506 TCGA-49-4507 
       12.66        35.54        46.72        14.07        32.84         8.81 
TCGA-49-4510 TCGA-49-4512 TCGA-49-4514 TCGA-49-6742 TCGA-49-6743 TCGA-49-6744 
       29.46        29.75        43.20        15.02        12.13        12.99 
TCGA-49-6745 TCGA-50-5044 TCGA-50-5045 TCGA-50-5049 TCGA-50-5051 TCGA-50-5055 
        4.93        20.48        71.47        48.82        14.96        25.81 
TCGA-50-5066 TCGA-50-5068 TCGA-50-5072 TCGA-50-5930 TCGA-50-5931 TCGA-50-5932 
        9.76        49.28         8.05         9.27         8.78        35.87 
TCGA-50-5933 TCGA-50-5935 TCGA-50-5936 TCGA-50-5939 TCGA-50-5941 TCGA-50-5942 
       77.88        21.47         8.45        15.12         9.37         4.44 
TCGA-50-5944 TCGA-50-5946 TCGA-50-6590 TCGA-50-6591 TCGA-50-6592 TCGA-50-6593 
       12.26        11.47        42.31         3.88        25.51        11.05 
TCGA-50-6594 TCGA-50-6595 TCGA-50-6597 TCGA-55-1592 TCGA-55-1594 TCGA-55-1595 
       12.16         6.21        33.37        23.05        38.73        48.62 
TCGA-55-5899 TCGA-55-6543 TCGA-55-6642 TCGA-64-1676 TCGA-64-1677 TCGA-64-1678 
        2.86         0.07        32.61        56.81        20.65        39.09 
TCGA-64-1680 TCGA-64-5774 TCGA-64-5775 TCGA-64-5778 TCGA-64-5779 TCGA-64-5781 
       37.02        83.84         0.10        30.44        16.67        39.52 
TCGA-64-5815 TCGA-67-3770 TCGA-67-3771 TCGA-67-3772 TCGA-67-3773 TCGA-67-3774 
        7.33         0.99         1.97         0.59         2.04         0.59 
TCGA-67-6215 TCGA-67-6216 TCGA-67-6217 TCGA-71-6725 TCGA-73-4658 TCGA-73-4659 
        0.89         0.69        13.87         2.01        52.57        23.38 
TCGA-73-4662 TCGA-73-4666 TCGA-73-4668 TCGA-73-4670 TCGA-73-4675 TCGA-73-4676 
       29.95        20.28        15.35         0.46         1.32         4.01 
TCGA-73-4677 TCGA-91-6831 TCGA-91-6835 TCGA-91-6836 
        1.25         1.28         1.15         0.36 

  OR2L3 MUTATED OR2L3 WILD-TYPE 
           0.79            0.07 
  OR2L3 MUTATED OR2L3 WILD-TYPE 
          45.17           85.32 
  OR2L3 MUTATED OR2L3 WILD-TYPE 
           9.96           13.94 
[1] "0.8 - 45.2 (10.0)" "0.1 - 85.3 (13.9)"
     TCGA-05-4249      TCGA-05-4250      TCGA-05-4382      TCGA-05-4384 
"OR2L3 WILD-TYPE"   "OR2L3 MUTATED"   "OR2L3 MUTATED" "OR2L3 WILD-TYPE" 
     TCGA-05-4390      TCGA-05-4396      TCGA-05-4397      TCGA-05-4398 
"OR2L3 WILD-TYPE"   "OR2L3 MUTATED" "OR2L3 WILD-TYPE" "OR2L3 WILD-TYPE" 
     TCGA-05-4402      TCGA-05-4405      TCGA-05-4415      TCGA-05-4417 
"OR2L3 WILD-TYPE" "OR2L3 WILD-TYPE" "OR2L3 WILD-TYPE" "OR2L3 WILD-TYPE" 
     TCGA-05-4418      TCGA-05-4420      TCGA-05-4424      TCGA-05-4426 
"OR2L3 WILD-TYPE" "OR2L3 WILD-TYPE" "OR2L3 WILD-TYPE" "OR2L3 WILD-TYPE" 
     TCGA-05-4427      TCGA-05-4430      TCGA-05-4432      TCGA-05-4433 
  "OR2L3 MUTATED" "OR2L3 WILD-TYPE"   "OR2L3 MUTATED" "OR2L3 WILD-TYPE" 
     TCGA-05-4434      TCGA-05-5420      TCGA-05-5423      TCGA-05-5425 
"OR2L3 WILD-TYPE" "OR2L3 WILD-TYPE" "OR2L3 WILD-TYPE" "OR2L3 WILD-TYPE" 
     TCGA-05-5429      TCGA-05-5715      TCGA-35-3615      TCGA-35-4122 
"OR2L3 WILD-TYPE" "OR2L3 WILD-TYPE" "OR2L3 WILD-TYPE" "OR2L3 WILD-TYPE" 
     TCGA-35-4123      TCGA-35-5375      TCGA-38-4625      TCGA-38-4626 
"OR2L3 WILD-TYPE"   "OR2L3 MUTATED" "OR2L3 WILD-TYPE" "OR2L3 WILD-TYPE" 
     TCGA-38-4627      TCGA-38-4628      TCGA-38-4629      TCGA-38-4630 
"OR2L3 WILD-TYPE" "OR2L3 WILD-TYPE" "OR2L3 WILD-TYPE" "OR2L3 WILD-TYPE" 
     TCGA-38-4631      TCGA-38-4632      TCGA-38-6178      TCGA-44-2655 
"OR2L3 WILD-TYPE" "OR2L3 WILD-TYPE" "OR2L3 WILD-TYPE" "OR2L3 WILD-TYPE" 
     TCGA-44-2656      TCGA-44-2657      TCGA-44-2659      TCGA-44-2661 
  "OR2L3 MUTATED" "OR2L3 WILD-TYPE" "OR2L3 WILD-TYPE" "OR2L3 WILD-TYPE" 
     TCGA-44-2662      TCGA-44-2665      TCGA-44-2666      TCGA-44-2668 
"OR2L3 WILD-TYPE" "OR2L3 WILD-TYPE" "OR2L3 WILD-TYPE"   "OR2L3 MUTATED" 
     TCGA-44-3396      TCGA-44-3398      TCGA-44-3918      TCGA-44-3919 
"OR2L3 WILD-TYPE" "OR2L3 WILD-TYPE" "OR2L3 WILD-TYPE" "OR2L3 WILD-TYPE" 
     TCGA-44-4112      TCGA-44-5643      TCGA-44-5645      TCGA-44-6144 
"OR2L3 WILD-TYPE" "OR2L3 WILD-TYPE" "OR2L3 WILD-TYPE" "OR2L3 WILD-TYPE" 
     TCGA-44-6145      TCGA-44-6146      TCGA-44-6147      TCGA-44-6148 
  "OR2L3 MUTATED" "OR2L3 WILD-TYPE" "OR2L3 WILD-TYPE" "OR2L3 WILD-TYPE" 
     TCGA-44-6774      TCGA-44-6775      TCGA-44-6776      TCGA-44-6777 
"OR2L3 WILD-TYPE" "OR2L3 WILD-TYPE" "OR2L3 WILD-TYPE" "OR2L3 WILD-TYPE" 
     TCGA-44-6778      TCGA-44-6779      TCGA-49-4486      TCGA-49-4487 
"OR2L3 WILD-TYPE" "OR2L3 WILD-TYPE" "OR2L3 WILD-TYPE" "OR2L3 WILD-TYPE" 
     TCGA-49-4488      TCGA-49-4490      TCGA-49-4494      TCGA-49-4501 
"OR2L3 WILD-TYPE" "OR2L3 WILD-TYPE" "OR2L3 WILD-TYPE" "OR2L3 WILD-TYPE" 
     TCGA-49-4505      TCGA-49-4506      TCGA-49-4507      TCGA-49-4510 
"OR2L3 WILD-TYPE" "OR2L3 WILD-TYPE" "OR2L3 WILD-TYPE" "OR2L3 WILD-TYPE" 
     TCGA-49-4512      TCGA-49-4514      TCGA-49-6742      TCGA-49-6743 
"OR2L3 WILD-TYPE" "OR2L3 WILD-TYPE" "OR2L3 WILD-TYPE" "OR2L3 WILD-TYPE" 
     TCGA-49-6744      TCGA-49-6745      TCGA-50-5044      TCGA-50-5045 
"OR2L3 WILD-TYPE" "OR2L3 WILD-TYPE" "OR2L3 WILD-TYPE" "OR2L3 WILD-TYPE" 
     TCGA-50-5049      TCGA-50-5051      TCGA-50-5055      TCGA-50-5066 
"OR2L3 WILD-TYPE" "OR2L3 WILD-TYPE" "OR2L3 WILD-TYPE" "OR2L3 WILD-TYPE" 
     TCGA-50-5068      TCGA-50-5072      TCGA-50-5930      TCGA-50-5931 
"OR2L3 WILD-TYPE" "OR2L3 WILD-TYPE" "OR2L3 WILD-TYPE" "OR2L3 WILD-TYPE" 
     TCGA-50-5932      TCGA-50-5933      TCGA-50-5935      TCGA-50-5936 
"OR2L3 WILD-TYPE" "OR2L3 WILD-TYPE" "OR2L3 WILD-TYPE" "OR2L3 WILD-TYPE" 
     TCGA-50-5939      TCGA-50-5941      TCGA-50-5942      TCGA-50-5944 
"OR2L3 WILD-TYPE" "OR2L3 WILD-TYPE" "OR2L3 WILD-TYPE" "OR2L3 WILD-TYPE" 
     TCGA-50-5946      TCGA-50-6590      TCGA-50-6591      TCGA-50-6592 
"OR2L3 WILD-TYPE" "OR2L3 WILD-TYPE" "OR2L3 WILD-TYPE" "OR2L3 WILD-TYPE" 
     TCGA-50-6593      TCGA-50-6594      TCGA-50-6595      TCGA-50-6597 
"OR2L3 WILD-TYPE" "OR2L3 WILD-TYPE" "OR2L3 WILD-TYPE" "OR2L3 WILD-TYPE" 
     TCGA-55-1592      TCGA-55-1594      TCGA-55-1595      TCGA-55-1596 
"OR2L3 WILD-TYPE" "OR2L3 WILD-TYPE" "OR2L3 WILD-TYPE"   "OR2L3 MUTATED" 
     TCGA-55-5899      TCGA-55-6543      TCGA-55-6642      TCGA-55-6712 
"OR2L3 WILD-TYPE" "OR2L3 WILD-TYPE" "OR2L3 WILD-TYPE"   "OR2L3 MUTATED" 
     TCGA-64-1676      TCGA-64-1677      TCGA-64-1678      TCGA-64-1680 
"OR2L3 WILD-TYPE" "OR2L3 WILD-TYPE" "OR2L3 WILD-TYPE" "OR2L3 WILD-TYPE" 
     TCGA-64-5774      TCGA-64-5775      TCGA-64-5778      TCGA-64-5779 
"OR2L3 WILD-TYPE" "OR2L3 WILD-TYPE" "OR2L3 WILD-TYPE" "OR2L3 WILD-TYPE" 
     TCGA-64-5781      TCGA-64-5815      TCGA-67-3770      TCGA-67-3771 
"OR2L3 WILD-TYPE" "OR2L3 WILD-TYPE" "OR2L3 WILD-TYPE" "OR2L3 WILD-TYPE" 
     TCGA-67-3772      TCGA-67-3773      TCGA-67-3774      TCGA-67-6215 
"OR2L3 WILD-TYPE" "OR2L3 WILD-TYPE" "OR2L3 WILD-TYPE" "OR2L3 WILD-TYPE" 
     TCGA-67-6216      TCGA-67-6217      TCGA-71-6725      TCGA-73-4658 
"OR2L3 WILD-TYPE" "OR2L3 WILD-TYPE" "OR2L3 WILD-TYPE" "OR2L3 WILD-TYPE" 
     TCGA-73-4659      TCGA-73-4662      TCGA-73-4666      TCGA-73-4668 
"OR2L3 WILD-TYPE" "OR2L3 WILD-TYPE" "OR2L3 WILD-TYPE" "OR2L3 WILD-TYPE" 
     TCGA-73-4670      TCGA-73-4675      TCGA-73-4676      TCGA-73-4677 
"OR2L3 WILD-TYPE" "OR2L3 WILD-TYPE" "OR2L3 WILD-TYPE" "OR2L3 WILD-TYPE" 
     TCGA-91-6828      TCGA-91-6829      TCGA-91-6831      TCGA-91-6835 
  "OR2L3 MUTATED"   "OR2L3 MUTATED" "OR2L3 WILD-TYPE" "OR2L3 WILD-TYPE" 
     TCGA-91-6836 
"OR2L3 WILD-TYPE" 
     TCGA-05-4249      TCGA-05-4250      TCGA-05-4382      TCGA-05-4384 
"OR2L3 WILD-TYPE"   "OR2L3 MUTATED"   "OR2L3 MUTATED" "OR2L3 WILD-TYPE" 
     TCGA-05-4390      TCGA-05-4396      TCGA-05-4397      TCGA-05-4398 
"OR2L3 WILD-TYPE"   "OR2L3 MUTATED" "OR2L3 WILD-TYPE" "OR2L3 WILD-TYPE" 
     TCGA-05-4402      TCGA-05-4405      TCGA-05-4415      TCGA-05-4417 
"OR2L3 WILD-TYPE" "OR2L3 WILD-TYPE" "OR2L3 WILD-TYPE" "OR2L3 WILD-TYPE" 
     TCGA-05-4418      TCGA-05-4420      TCGA-05-4424      TCGA-05-4426 
"OR2L3 WILD-TYPE" "OR2L3 WILD-TYPE" "OR2L3 WILD-TYPE" "OR2L3 WILD-TYPE" 
     TCGA-05-4427      TCGA-05-4430      TCGA-05-4432      TCGA-05-4433 
  "OR2L3 MUTATED" "OR2L3 WILD-TYPE"   "OR2L3 MUTATED" "OR2L3 WILD-TYPE" 
     TCGA-05-4434      TCGA-05-5420      TCGA-05-5423      TCGA-05-5425 
"OR2L3 WILD-TYPE" "OR2L3 WILD-TYPE" "OR2L3 WILD-TYPE" "OR2L3 WILD-TYPE" 
     TCGA-05-5429      TCGA-05-5715      TCGA-35-3615      TCGA-35-4122 
"OR2L3 WILD-TYPE" "OR2L3 WILD-TYPE" "OR2L3 WILD-TYPE" "OR2L3 WILD-TYPE" 
     TCGA-35-4123      TCGA-35-5375      TCGA-38-4625      TCGA-38-4626 
"OR2L3 WILD-TYPE"   "OR2L3 MUTATED" "OR2L3 WILD-TYPE" "OR2L3 WILD-TYPE" 
     TCGA-38-4627      TCGA-38-4628      TCGA-38-4629      TCGA-38-4630 
"OR2L3 WILD-TYPE" "OR2L3 WILD-TYPE" "OR2L3 WILD-TYPE" "OR2L3 WILD-TYPE" 
     TCGA-38-4631      TCGA-38-4632      TCGA-38-6178      TCGA-44-2655 
"OR2L3 WILD-TYPE" "OR2L3 WILD-TYPE" "OR2L3 WILD-TYPE" "OR2L3 WILD-TYPE" 
     TCGA-44-2656      TCGA-44-2657      TCGA-44-2659      TCGA-44-2661 
  "OR2L3 MUTATED" "OR2L3 WILD-TYPE" "OR2L3 WILD-TYPE" "OR2L3 WILD-TYPE" 
     TCGA-44-2662      TCGA-44-2665      TCGA-44-2666      TCGA-44-2668 
"OR2L3 WILD-TYPE" "OR2L3 WILD-TYPE" "OR2L3 WILD-TYPE"   "OR2L3 MUTATED" 
     TCGA-44-3396      TCGA-44-3398      TCGA-44-3918      TCGA-44-3919 
"OR2L3 WILD-TYPE" "OR2L3 WILD-TYPE" "OR2L3 WILD-TYPE" "OR2L3 WILD-TYPE" 
     TCGA-44-4112      TCGA-44-5643      TCGA-44-5645      TCGA-44-6144 
"OR2L3 WILD-TYPE" "OR2L3 WILD-TYPE" "OR2L3 WILD-TYPE" "OR2L3 WILD-TYPE" 
     TCGA-44-6145      TCGA-44-6146      TCGA-44-6147      TCGA-44-6148 
  "OR2L3 MUTATED" "OR2L3 WILD-TYPE" "OR2L3 WILD-TYPE" "OR2L3 WILD-TYPE" 
     TCGA-44-6774      TCGA-44-6775      TCGA-44-6776      TCGA-44-6777 
"OR2L3 WILD-TYPE" "OR2L3 WILD-TYPE" "OR2L3 WILD-TYPE" "OR2L3 WILD-TYPE" 
     TCGA-44-6778      TCGA-44-6779      TCGA-49-4486      TCGA-49-4487 
"OR2L3 WILD-TYPE" "OR2L3 WILD-TYPE" "OR2L3 WILD-TYPE" "OR2L3 WILD-TYPE" 
     TCGA-49-4488      TCGA-49-4490      TCGA-49-4494      TCGA-49-4501 
"OR2L3 WILD-TYPE" "OR2L3 WILD-TYPE" "OR2L3 WILD-TYPE" "OR2L3 WILD-TYPE" 
     TCGA-49-4505      TCGA-49-4506      TCGA-49-4507      TCGA-49-4510 
"OR2L3 WILD-TYPE" "OR2L3 WILD-TYPE" "OR2L3 WILD-TYPE" "OR2L3 WILD-TYPE" 
     TCGA-49-4512      TCGA-49-4514      TCGA-49-6742      TCGA-49-6743 
"OR2L3 WILD-TYPE" "OR2L3 WILD-TYPE" "OR2L3 WILD-TYPE" "OR2L3 WILD-TYPE" 
     TCGA-49-6744      TCGA-49-6745      TCGA-50-5044      TCGA-50-5045 
"OR2L3 WILD-TYPE" "OR2L3 WILD-TYPE" "OR2L3 WILD-TYPE" "OR2L3 WILD-TYPE" 
     TCGA-50-5049      TCGA-50-5051      TCGA-50-5055      TCGA-50-5066 
"OR2L3 WILD-TYPE" "OR2L3 WILD-TYPE" "OR2L3 WILD-TYPE" "OR2L3 WILD-TYPE" 
     TCGA-50-5068      TCGA-50-5072      TCGA-50-5930      TCGA-50-5931 
"OR2L3 WILD-TYPE" "OR2L3 WILD-TYPE" "OR2L3 WILD-TYPE" "OR2L3 WILD-TYPE" 
     TCGA-50-5932      TCGA-50-5933      TCGA-50-5935      TCGA-50-5936 
"OR2L3 WILD-TYPE" "OR2L3 WILD-TYPE" "OR2L3 WILD-TYPE" "OR2L3 WILD-TYPE" 
     TCGA-50-5939      TCGA-50-5941      TCGA-50-5942      TCGA-50-5944 
"OR2L3 WILD-TYPE" "OR2L3 WILD-TYPE" "OR2L3 WILD-TYPE" "OR2L3 WILD-TYPE" 
     TCGA-50-5946      TCGA-50-6590      TCGA-50-6591      TCGA-50-6592 
"OR2L3 WILD-TYPE" "OR2L3 WILD-TYPE" "OR2L3 WILD-TYPE" "OR2L3 WILD-TYPE" 
     TCGA-50-6593      TCGA-50-6594      TCGA-50-6595      TCGA-50-6597 
"OR2L3 WILD-TYPE" "OR2L3 WILD-TYPE" "OR2L3 WILD-TYPE" "OR2L3 WILD-TYPE" 
     TCGA-55-1592      TCGA-55-1594      TCGA-55-1595      TCGA-55-1596 
"OR2L3 WILD-TYPE" "OR2L3 WILD-TYPE" "OR2L3 WILD-TYPE"   "OR2L3 MUTATED" 
     TCGA-55-5899      TCGA-55-6543      TCGA-55-6642      TCGA-55-6712 
"OR2L3 WILD-TYPE" "OR2L3 WILD-TYPE" "OR2L3 WILD-TYPE"   "OR2L3 MUTATED" 
     TCGA-64-1676      TCGA-64-1677      TCGA-64-1678      TCGA-64-1680 
"OR2L3 WILD-TYPE" "OR2L3 WILD-TYPE" "OR2L3 WILD-TYPE" "OR2L3 WILD-TYPE" 
     TCGA-64-5774      TCGA-64-5775      TCGA-64-5778      TCGA-64-5779 
"OR2L3 WILD-TYPE" "OR2L3 WILD-TYPE" "OR2L3 WILD-TYPE" "OR2L3 WILD-TYPE" 
     TCGA-64-5781      TCGA-64-5815      TCGA-67-3770      TCGA-67-3771 
"OR2L3 WILD-TYPE" "OR2L3 WILD-TYPE" "OR2L3 WILD-TYPE" "OR2L3 WILD-TYPE" 
     TCGA-67-3772      TCGA-67-3773      TCGA-67-3774      TCGA-67-6215 
"OR2L3 WILD-TYPE" "OR2L3 WILD-TYPE" "OR2L3 WILD-TYPE" "OR2L3 WILD-TYPE" 
     TCGA-67-6216      TCGA-67-6217      TCGA-71-6725      TCGA-73-4658 
"OR2L3 WILD-TYPE" "OR2L3 WILD-TYPE" "OR2L3 WILD-TYPE" "OR2L3 WILD-TYPE" 
     TCGA-73-4659      TCGA-73-4662      TCGA-73-4666      TCGA-73-4668 
"OR2L3 WILD-TYPE" "OR2L3 WILD-TYPE" "OR2L3 WILD-TYPE" "OR2L3 WILD-TYPE" 
     TCGA-73-4670      TCGA-73-4675      TCGA-73-4676      TCGA-73-4677 
"OR2L3 WILD-TYPE" "OR2L3 WILD-TYPE" "OR2L3 WILD-TYPE" "OR2L3 WILD-TYPE" 
     TCGA-91-6828      TCGA-91-6829      TCGA-91-6831      TCGA-91-6835 
  "OR2L3 MUTATED"   "OR2L3 MUTATED" "OR2L3 WILD-TYPE" "OR2L3 WILD-TYPE" 
     TCGA-91-6836 
"OR2L3 WILD-TYPE" 
     TCGA-05-4249      TCGA-05-4250      TCGA-05-4382      TCGA-05-4384 
"OR2L3 WILD-TYPE"   "OR2L3 MUTATED"   "OR2L3 MUTATED" "OR2L3 WILD-TYPE" 
     TCGA-05-4390      TCGA-05-4396      TCGA-05-4397      TCGA-05-4398 
"OR2L3 WILD-TYPE"   "OR2L3 MUTATED" "OR2L3 WILD-TYPE" "OR2L3 WILD-TYPE" 
     TCGA-05-4402      TCGA-05-4405      TCGA-05-4415      TCGA-05-4417 
"OR2L3 WILD-TYPE" "OR2L3 WILD-TYPE" "OR2L3 WILD-TYPE" "OR2L3 WILD-TYPE" 
     TCGA-05-4418      TCGA-05-4420      TCGA-05-4424      TCGA-05-4426 
"OR2L3 WILD-TYPE" "OR2L3 WILD-TYPE" "OR2L3 WILD-TYPE" "OR2L3 WILD-TYPE" 
     TCGA-05-4427      TCGA-05-4430      TCGA-05-4432      TCGA-05-4433 
  "OR2L3 MUTATED" "OR2L3 WILD-TYPE"   "OR2L3 MUTATED" "OR2L3 WILD-TYPE" 
     TCGA-05-4434      TCGA-05-5420      TCGA-05-5423      TCGA-05-5425 
"OR2L3 WILD-TYPE" "OR2L3 WILD-TYPE" "OR2L3 WILD-TYPE" "OR2L3 WILD-TYPE" 
     TCGA-05-5429      TCGA-05-5715      TCGA-35-3615      TCGA-35-4122 
"OR2L3 WILD-TYPE" "OR2L3 WILD-TYPE" "OR2L3 WILD-TYPE" "OR2L3 WILD-TYPE" 
     TCGA-35-4123      TCGA-35-5375      TCGA-38-4625      TCGA-38-4626 
"OR2L3 WILD-TYPE"   "OR2L3 MUTATED" "OR2L3 WILD-TYPE" "OR2L3 WILD-TYPE" 
     TCGA-38-4627      TCGA-38-4628      TCGA-38-4629      TCGA-38-4630 
"OR2L3 WILD-TYPE" "OR2L3 WILD-TYPE" "OR2L3 WILD-TYPE" "OR2L3 WILD-TYPE" 
     TCGA-38-4631      TCGA-38-4632      TCGA-38-6178      TCGA-44-2655 
"OR2L3 WILD-TYPE" "OR2L3 WILD-TYPE" "OR2L3 WILD-TYPE" "OR2L3 WILD-TYPE" 
     TCGA-44-2656      TCGA-44-2657      TCGA-44-2659      TCGA-44-2661 
  "OR2L3 MUTATED" "OR2L3 WILD-TYPE" "OR2L3 WILD-TYPE" "OR2L3 WILD-TYPE" 
     TCGA-44-2662      TCGA-44-2665      TCGA-44-2666      TCGA-44-2668 
"OR2L3 WILD-TYPE" "OR2L3 WILD-TYPE" "OR2L3 WILD-TYPE"   "OR2L3 MUTATED" 
     TCGA-44-3396      TCGA-44-3398      TCGA-44-3918      TCGA-44-3919 
"OR2L3 WILD-TYPE" "OR2L3 WILD-TYPE" "OR2L3 WILD-TYPE" "OR2L3 WILD-TYPE" 
     TCGA-44-4112      TCGA-44-5643      TCGA-44-5645      TCGA-44-6144 
"OR2L3 WILD-TYPE" "OR2L3 WILD-TYPE" "OR2L3 WILD-TYPE" "OR2L3 WILD-TYPE" 
     TCGA-44-6145      TCGA-44-6146      TCGA-44-6147      TCGA-44-6148 
  "OR2L3 MUTATED" "OR2L3 WILD-TYPE" "OR2L3 WILD-TYPE" "OR2L3 WILD-TYPE" 
     TCGA-44-6774      TCGA-44-6775      TCGA-44-6776      TCGA-44-6777 
"OR2L3 WILD-TYPE" "OR2L3 WILD-TYPE" "OR2L3 WILD-TYPE" "OR2L3 WILD-TYPE" 
     TCGA-44-6778      TCGA-44-6779      TCGA-49-4486      TCGA-49-4487 
"OR2L3 WILD-TYPE" "OR2L3 WILD-TYPE" "OR2L3 WILD-TYPE" "OR2L3 WILD-TYPE" 
     TCGA-49-4488      TCGA-49-4490      TCGA-49-4494      TCGA-49-4501 
"OR2L3 WILD-TYPE" "OR2L3 WILD-TYPE" "OR2L3 WILD-TYPE" "OR2L3 WILD-TYPE" 
     TCGA-49-4505      TCGA-49-4506      TCGA-49-4507      TCGA-49-4510 
"OR2L3 WILD-TYPE" "OR2L3 WILD-TYPE" "OR2L3 WILD-TYPE" "OR2L3 WILD-TYPE" 
     TCGA-49-4512      TCGA-49-4514      TCGA-49-6742      TCGA-49-6743 
"OR2L3 WILD-TYPE" "OR2L3 WILD-TYPE" "OR2L3 WILD-TYPE" "OR2L3 WILD-TYPE" 
     TCGA-49-6744      TCGA-49-6745      TCGA-50-5044      TCGA-50-5045 
"OR2L3 WILD-TYPE" "OR2L3 WILD-TYPE" "OR2L3 WILD-TYPE" "OR2L3 WILD-TYPE" 
     TCGA-50-5049      TCGA-50-5051      TCGA-50-5055      TCGA-50-5066 
"OR2L3 WILD-TYPE" "OR2L3 WILD-TYPE" "OR2L3 WILD-TYPE" "OR2L3 WILD-TYPE" 
     TCGA-50-5068      TCGA-50-5072      TCGA-50-5930      TCGA-50-5931 
"OR2L3 WILD-TYPE" "OR2L3 WILD-TYPE" "OR2L3 WILD-TYPE" "OR2L3 WILD-TYPE" 
     TCGA-50-5932      TCGA-50-5933      TCGA-50-5935      TCGA-50-5936 
"OR2L3 WILD-TYPE" "OR2L3 WILD-TYPE" "OR2L3 WILD-TYPE" "OR2L3 WILD-TYPE" 
     TCGA-50-5939      TCGA-50-5941      TCGA-50-5942      TCGA-50-5944 
"OR2L3 WILD-TYPE" "OR2L3 WILD-TYPE" "OR2L3 WILD-TYPE" "OR2L3 WILD-TYPE" 
     TCGA-50-5946      TCGA-50-6590      TCGA-50-6591      TCGA-50-6592 
"OR2L3 WILD-TYPE" "OR2L3 WILD-TYPE" "OR2L3 WILD-TYPE" "OR2L3 WILD-TYPE" 
     TCGA-50-6593      TCGA-50-6594      TCGA-50-6595      TCGA-50-6597 
"OR2L3 WILD-TYPE" "OR2L3 WILD-TYPE" "OR2L3 WILD-TYPE" "OR2L3 WILD-TYPE" 
     TCGA-55-1592      TCGA-55-1594      TCGA-55-1595      TCGA-55-1596 
"OR2L3 WILD-TYPE" "OR2L3 WILD-TYPE" "OR2L3 WILD-TYPE"   "OR2L3 MUTATED" 
     TCGA-55-5899      TCGA-55-6543      TCGA-55-6642      TCGA-55-6712 
"OR2L3 WILD-TYPE" "OR2L3 WILD-TYPE" "OR2L3 WILD-TYPE"   "OR2L3 MUTATED" 
     TCGA-64-1676      TCGA-64-1677      TCGA-64-1678      TCGA-64-1680 
"OR2L3 WILD-TYPE" "OR2L3 WILD-TYPE" "OR2L3 WILD-TYPE" "OR2L3 WILD-TYPE" 
     TCGA-64-5774      TCGA-64-5775      TCGA-64-5778      TCGA-64-5779 
"OR2L3 WILD-TYPE" "OR2L3 WILD-TYPE" "OR2L3 WILD-TYPE" "OR2L3 WILD-TYPE" 
     TCGA-64-5781      TCGA-64-5815      TCGA-67-3770      TCGA-67-3771 
"OR2L3 WILD-TYPE" "OR2L3 WILD-TYPE" "OR2L3 WILD-TYPE" "OR2L3 WILD-TYPE" 
     TCGA-67-3772      TCGA-67-3773      TCGA-67-3774      TCGA-67-6215 
"OR2L3 WILD-TYPE" "OR2L3 WILD-TYPE" "OR2L3 WILD-TYPE" "OR2L3 WILD-TYPE" 
     TCGA-67-6216      TCGA-67-6217      TCGA-71-6725      TCGA-73-4658 
"OR2L3 WILD-TYPE" "OR2L3 WILD-TYPE" "OR2L3 WILD-TYPE" "OR2L3 WILD-TYPE" 
     TCGA-73-4659      TCGA-73-4662      TCGA-73-4666      TCGA-73-4668 
"OR2L3 WILD-TYPE" "OR2L3 WILD-TYPE" "OR2L3 WILD-TYPE" "OR2L3 WILD-TYPE" 
     TCGA-73-4670      TCGA-73-4675      TCGA-73-4676      TCGA-73-4677 
"OR2L3 WILD-TYPE" "OR2L3 WILD-TYPE" "OR2L3 WILD-TYPE" "OR2L3 WILD-TYPE" 
     TCGA-91-6828      TCGA-91-6829      TCGA-91-6831      TCGA-91-6835 
  "OR2L3 MUTATED"   "OR2L3 MUTATED" "OR2L3 WILD-TYPE" "OR2L3 WILD-TYPE" 
     TCGA-91-6836 
"OR2L3 WILD-TYPE" 
[1] "hr=" "1.1"
D11V2, continuous
D11V3, binary
[1] "tbl2"
                 cls
clus              [,1] [,2]
  OR2L3 MUTATED      3   10
  OR2L3 WILD-TYPE   90   69
        clus
vv       OR2L3 MUTATED OR2L3 WILD-TYPE
  FEMALE             3              90
  MALE              10              69
D11V4, continuous
[1] "Remove cluster labels:" "OR2L3 MUTATED"         
clus
  OR2L3 MUTATED OR2L3 WILD-TYPE 
              1              11 
     TCGA-35-4122      TCGA-35-4123      TCGA-64-1677      TCGA-64-5778 
"OR2L3 WILD-TYPE" "OR2L3 WILD-TYPE" "OR2L3 WILD-TYPE" "OR2L3 WILD-TYPE" 
     TCGA-71-6725      TCGA-73-4659      TCGA-73-4662      TCGA-73-4666 
"OR2L3 WILD-TYPE" "OR2L3 WILD-TYPE" "OR2L3 WILD-TYPE" "OR2L3 WILD-TYPE" 
     TCGA-73-4668      TCGA-73-4676      TCGA-75-5122 
"OR2L3 WILD-TYPE" "OR2L3 WILD-TYPE" "OR2L3 WILD-TYPE" 
D11V5, multiclass
D11V6, multiclass
    clus
vv   OR2L3 MUTATED OR2L3 WILD-TYPE
  T1             2              39
  T2             9              99
  T3             1              13
  T4             1               7
D11V7, multiclass
       clus
vv      OR2L3 MUTATED OR2L3 WILD-TYPE
  N0                6              89
  N1                6              31
  N2+N3             1              34
D11V8, multiclass
    clus
vv   OR2L3 MUTATED OR2L3 WILD-TYPE
  M0            10             127
  M1             0               9
  MX             3              19
D11V9, multiclass
     clus
vv    OR2L3 MUTATED OR2L3 WILD-TYPE
  I               6              82
  II              3              30
  III             3              36
  IV              0               9
D11V10, binary
[1] "tbl2"
                 cls
clus              [,1] [,2]
  OR2L3 MUTATED      0   13
  OR2L3 WILD-TYPE   16  143
     clus
vv    OR2L3 MUTATED OR2L3 WILD-TYPE
  NO              0              16
  YES            13             143
D11V11, continuous
D11V12, continuous
D11V13, multiclass
                                             clus
vv                                            OR2L3 MUTATED OR2L3 WILD-TYPE
  CURRENT REFORMED SMOKER FOR < OR = 15 YEARS             9              53
  CURRENT REFORMED SMOKER FOR > 15 YEARS                  2              44
  CURRENT SMOKER                                          2              26
  LIFELONG NON-SMOKER                                     0              24
D11V14, continuous

Clustering(12) Variable = RIMS2 MUTATION ANALYSIS
D12V1, survival
                 sevent
clus2              0  1
  RIMS2 MUTATED   15 14
  RIMS2 WILD-TYPE 84 36
  RIMS2 MUTATED RIMS2 WILD-TYPE 
             29             120 
  RIMS2 MUTATED RIMS2 WILD-TYPE 
             14              36 
$`RIMS2 MUTATED`
TCGA-05-4249 TCGA-05-4382 TCGA-05-4415 TCGA-38-4628 TCGA-38-4630 TCGA-38-4632 
       38.07        19.92         2.96        49.02        35.28        44.61 
TCGA-44-2656 TCGA-44-6778 TCGA-49-4510 TCGA-49-6742 TCGA-50-5049 TCGA-50-5066 
       19.10        36.49        29.46        15.02        48.82         9.76 
TCGA-50-5932 TCGA-50-5933 TCGA-50-6590 TCGA-50-6593 TCGA-55-1592 TCGA-55-5899 
       35.87        77.88        42.31        11.05        23.05         2.86 
TCGA-64-1677 TCGA-64-5775 TCGA-64-5781 TCGA-64-5815 TCGA-67-3770 TCGA-67-3771 
       20.65         0.10        39.52         7.33         0.99         1.97 
TCGA-73-4658 TCGA-73-4659 TCGA-73-4666 TCGA-91-6828 TCGA-91-6836 
       52.57        23.38        20.28         1.22         0.36 

$`RIMS2 WILD-TYPE`
TCGA-05-4250 TCGA-05-4384 TCGA-05-4390 TCGA-05-4396 TCGA-05-4397 TCGA-05-4398 
        3.98        14.01        37.02         9.96        24.03        47.05 
TCGA-05-4402 TCGA-05-4405 TCGA-05-4417 TCGA-05-4418 TCGA-05-4420 TCGA-05-4424 
        8.02        20.05        14.93         8.98        29.95        30.02 
TCGA-05-4426 TCGA-05-4427 TCGA-05-4430 TCGA-05-4432 TCGA-05-4433 TCGA-05-4434 
       26.01        26.01        25.02        25.02        24.00        15.02 
TCGA-05-5420 TCGA-05-5423 TCGA-05-5425 TCGA-05-5429 TCGA-05-5715 TCGA-35-3615 
        1.02         4.96         2.96         0.99         2.04         0.46 
TCGA-35-4122 TCGA-35-4123 TCGA-35-5375 TCGA-38-4625 TCGA-38-4626 TCGA-38-4627 
        7.36         5.95         8.68        47.61        85.32        37.71 
TCGA-38-4629 TCGA-38-4631 TCGA-38-6178 TCGA-44-2655 TCGA-44-2657 TCGA-44-2659 
       28.37        11.64         5.19        18.87        13.15        17.39 
TCGA-44-2661 TCGA-44-2662 TCGA-44-2665 TCGA-44-2666 TCGA-44-2668 TCGA-44-3396 
        3.39        15.78        13.15         3.19         8.09        10.22 
TCGA-44-3398 TCGA-44-3918 TCGA-44-3919 TCGA-44-4112 TCGA-44-5643 TCGA-44-5645 
        8.32         6.44         6.21         4.60         3.48         6.84 
TCGA-44-6144 TCGA-44-6145 TCGA-44-6146 TCGA-44-6147 TCGA-44-6148 TCGA-44-6774 
        0.30         3.35         9.93         7.76         3.12         5.42 
TCGA-44-6775 TCGA-44-6776 TCGA-44-6777 TCGA-44-6779 TCGA-49-4486 TCGA-49-4487 
        2.70        63.72        32.45        16.41        76.21        28.11 
TCGA-49-4488 TCGA-49-4490 TCGA-49-4494 TCGA-49-4501 TCGA-49-4505 TCGA-49-4506 
       28.57        12.66        35.54        46.72        14.07        32.84 
TCGA-49-4507 TCGA-49-4512 TCGA-49-4514 TCGA-49-6743 TCGA-49-6744 TCGA-49-6745 
        8.81        29.75        43.20        12.13        12.99         4.93 
TCGA-50-5044 TCGA-50-5045 TCGA-50-5051 TCGA-50-5055 TCGA-50-5068 TCGA-50-5072 
       20.48        71.47        14.96        25.81        49.28         8.05 
TCGA-50-5930 TCGA-50-5931 TCGA-50-5935 TCGA-50-5936 TCGA-50-5939 TCGA-50-5941 
        9.27         8.78        21.47         8.45        15.12         9.37 
TCGA-50-5942 TCGA-50-5944 TCGA-50-5946 TCGA-50-6591 TCGA-50-6592 TCGA-50-6594 
        4.44        12.26        11.47         3.88        25.51        12.16 
TCGA-50-6595 TCGA-50-6597 TCGA-55-1594 TCGA-55-1595 TCGA-55-1596 TCGA-55-6543 
        6.21        33.37        38.73        48.62        45.17         0.07 
TCGA-55-6642 TCGA-55-6712 TCGA-64-1676 TCGA-64-1678 TCGA-64-1680 TCGA-64-5774 
       32.61         0.79        56.81        39.09        37.02        83.84 
TCGA-64-5778 TCGA-64-5779 TCGA-67-3772 TCGA-67-3773 TCGA-67-3774 TCGA-67-6215 
       30.44        16.67         0.59         2.04         0.59         0.89 
TCGA-67-6216 TCGA-67-6217 TCGA-71-6725 TCGA-73-4662 TCGA-73-4668 TCGA-73-4670 
        0.69        13.87         2.01        29.95        15.35         0.46 
TCGA-73-4675 TCGA-73-4676 TCGA-73-4677 TCGA-91-6829 TCGA-91-6831 TCGA-91-6835 
        1.32         4.01         1.25        41.33         1.28         1.15 

  RIMS2 MUTATED RIMS2 WILD-TYPE 
           0.10            0.07 
  RIMS2 MUTATED RIMS2 WILD-TYPE 
          77.88           85.32 
  RIMS2 MUTATED RIMS2 WILD-TYPE 
          20.65           12.46 
[1] "0.1 - 77.9 (20.6)" "0.1 - 85.3 (12.5)"
     TCGA-05-4249      TCGA-05-4250      TCGA-05-4382      TCGA-05-4384 
  "RIMS2 MUTATED" "RIMS2 WILD-TYPE"   "RIMS2 MUTATED" "RIMS2 WILD-TYPE" 
     TCGA-05-4390      TCGA-05-4396      TCGA-05-4397      TCGA-05-4398 
"RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" 
     TCGA-05-4402      TCGA-05-4405      TCGA-05-4415      TCGA-05-4417 
"RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE"   "RIMS2 MUTATED" "RIMS2 WILD-TYPE" 
     TCGA-05-4418      TCGA-05-4420      TCGA-05-4424      TCGA-05-4426 
"RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" 
     TCGA-05-4427      TCGA-05-4430      TCGA-05-4432      TCGA-05-4433 
"RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" 
     TCGA-05-4434      TCGA-05-5420      TCGA-05-5423      TCGA-05-5425 
"RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" 
     TCGA-05-5429      TCGA-05-5715      TCGA-35-3615      TCGA-35-4122 
"RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" 
     TCGA-35-4123      TCGA-35-5375      TCGA-38-4625      TCGA-38-4626 
"RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" 
     TCGA-38-4627      TCGA-38-4628      TCGA-38-4629      TCGA-38-4630 
"RIMS2 WILD-TYPE"   "RIMS2 MUTATED" "RIMS2 WILD-TYPE"   "RIMS2 MUTATED" 
     TCGA-38-4631      TCGA-38-4632      TCGA-38-6178      TCGA-44-2655 
"RIMS2 WILD-TYPE"   "RIMS2 MUTATED" "RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" 
     TCGA-44-2656      TCGA-44-2657      TCGA-44-2659      TCGA-44-2661 
  "RIMS2 MUTATED" "RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" 
     TCGA-44-2662      TCGA-44-2665      TCGA-44-2666      TCGA-44-2668 
"RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" 
     TCGA-44-3396      TCGA-44-3398      TCGA-44-3918      TCGA-44-3919 
"RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" 
     TCGA-44-4112      TCGA-44-5643      TCGA-44-5645      TCGA-44-6144 
"RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" 
     TCGA-44-6145      TCGA-44-6146      TCGA-44-6147      TCGA-44-6148 
"RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" 
     TCGA-44-6774      TCGA-44-6775      TCGA-44-6776      TCGA-44-6777 
"RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" 
     TCGA-44-6778      TCGA-44-6779      TCGA-49-4486      TCGA-49-4487 
  "RIMS2 MUTATED" "RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" 
     TCGA-49-4488      TCGA-49-4490      TCGA-49-4494      TCGA-49-4501 
"RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" 
     TCGA-49-4505      TCGA-49-4506      TCGA-49-4507      TCGA-49-4510 
"RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE"   "RIMS2 MUTATED" 
     TCGA-49-4512      TCGA-49-4514      TCGA-49-6742      TCGA-49-6743 
"RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE"   "RIMS2 MUTATED" "RIMS2 WILD-TYPE" 
     TCGA-49-6744      TCGA-49-6745      TCGA-50-5044      TCGA-50-5045 
"RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" 
     TCGA-50-5049      TCGA-50-5051      TCGA-50-5055      TCGA-50-5066 
  "RIMS2 MUTATED" "RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE"   "RIMS2 MUTATED" 
     TCGA-50-5068      TCGA-50-5072      TCGA-50-5930      TCGA-50-5931 
"RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" 
     TCGA-50-5932      TCGA-50-5933      TCGA-50-5935      TCGA-50-5936 
  "RIMS2 MUTATED"   "RIMS2 MUTATED" "RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" 
     TCGA-50-5939      TCGA-50-5941      TCGA-50-5942      TCGA-50-5944 
"RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" 
     TCGA-50-5946      TCGA-50-6590      TCGA-50-6591      TCGA-50-6592 
"RIMS2 WILD-TYPE"   "RIMS2 MUTATED" "RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" 
     TCGA-50-6593      TCGA-50-6594      TCGA-50-6595      TCGA-50-6597 
  "RIMS2 MUTATED" "RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" 
     TCGA-55-1592      TCGA-55-1594      TCGA-55-1595      TCGA-55-1596 
  "RIMS2 MUTATED" "RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" 
     TCGA-55-5899      TCGA-55-6543      TCGA-55-6642      TCGA-55-6712 
  "RIMS2 MUTATED" "RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" 
     TCGA-64-1676      TCGA-64-1677      TCGA-64-1678      TCGA-64-1680 
"RIMS2 WILD-TYPE"   "RIMS2 MUTATED" "RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" 
     TCGA-64-5774      TCGA-64-5775      TCGA-64-5778      TCGA-64-5779 
"RIMS2 WILD-TYPE"   "RIMS2 MUTATED" "RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" 
     TCGA-64-5781      TCGA-64-5815      TCGA-67-3770      TCGA-67-3771 
  "RIMS2 MUTATED"   "RIMS2 MUTATED"   "RIMS2 MUTATED"   "RIMS2 MUTATED" 
     TCGA-67-3772      TCGA-67-3773      TCGA-67-3774      TCGA-67-6215 
"RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" 
     TCGA-67-6216      TCGA-67-6217      TCGA-71-6725      TCGA-73-4658 
"RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE"   "RIMS2 MUTATED" 
     TCGA-73-4659      TCGA-73-4662      TCGA-73-4666      TCGA-73-4668 
  "RIMS2 MUTATED" "RIMS2 WILD-TYPE"   "RIMS2 MUTATED" "RIMS2 WILD-TYPE" 
     TCGA-73-4670      TCGA-73-4675      TCGA-73-4676      TCGA-73-4677 
"RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" 
     TCGA-91-6828      TCGA-91-6829      TCGA-91-6831      TCGA-91-6835 
  "RIMS2 MUTATED" "RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" 
     TCGA-91-6836 
  "RIMS2 MUTATED" 
     TCGA-05-4249      TCGA-05-4250      TCGA-05-4382      TCGA-05-4384 
  "RIMS2 MUTATED" "RIMS2 WILD-TYPE"   "RIMS2 MUTATED" "RIMS2 WILD-TYPE" 
     TCGA-05-4390      TCGA-05-4396      TCGA-05-4397      TCGA-05-4398 
"RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" 
     TCGA-05-4402      TCGA-05-4405      TCGA-05-4415      TCGA-05-4417 
"RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE"   "RIMS2 MUTATED" "RIMS2 WILD-TYPE" 
     TCGA-05-4418      TCGA-05-4420      TCGA-05-4424      TCGA-05-4426 
"RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" 
     TCGA-05-4427      TCGA-05-4430      TCGA-05-4432      TCGA-05-4433 
"RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" 
     TCGA-05-4434      TCGA-05-5420      TCGA-05-5423      TCGA-05-5425 
"RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" 
     TCGA-05-5429      TCGA-05-5715      TCGA-35-3615      TCGA-35-4122 
"RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" 
     TCGA-35-4123      TCGA-35-5375      TCGA-38-4625      TCGA-38-4626 
"RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" 
     TCGA-38-4627      TCGA-38-4628      TCGA-38-4629      TCGA-38-4630 
"RIMS2 WILD-TYPE"   "RIMS2 MUTATED" "RIMS2 WILD-TYPE"   "RIMS2 MUTATED" 
     TCGA-38-4631      TCGA-38-4632      TCGA-38-6178      TCGA-44-2655 
"RIMS2 WILD-TYPE"   "RIMS2 MUTATED" "RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" 
     TCGA-44-2656      TCGA-44-2657      TCGA-44-2659      TCGA-44-2661 
  "RIMS2 MUTATED" "RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" 
     TCGA-44-2662      TCGA-44-2665      TCGA-44-2666      TCGA-44-2668 
"RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" 
     TCGA-44-3396      TCGA-44-3398      TCGA-44-3918      TCGA-44-3919 
"RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" 
     TCGA-44-4112      TCGA-44-5643      TCGA-44-5645      TCGA-44-6144 
"RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" 
     TCGA-44-6145      TCGA-44-6146      TCGA-44-6147      TCGA-44-6148 
"RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" 
     TCGA-44-6774      TCGA-44-6775      TCGA-44-6776      TCGA-44-6777 
"RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" 
     TCGA-44-6778      TCGA-44-6779      TCGA-49-4486      TCGA-49-4487 
  "RIMS2 MUTATED" "RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" 
     TCGA-49-4488      TCGA-49-4490      TCGA-49-4494      TCGA-49-4501 
"RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" 
     TCGA-49-4505      TCGA-49-4506      TCGA-49-4507      TCGA-49-4510 
"RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE"   "RIMS2 MUTATED" 
     TCGA-49-4512      TCGA-49-4514      TCGA-49-6742      TCGA-49-6743 
"RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE"   "RIMS2 MUTATED" "RIMS2 WILD-TYPE" 
     TCGA-49-6744      TCGA-49-6745      TCGA-50-5044      TCGA-50-5045 
"RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" 
     TCGA-50-5049      TCGA-50-5051      TCGA-50-5055      TCGA-50-5066 
  "RIMS2 MUTATED" "RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE"   "RIMS2 MUTATED" 
     TCGA-50-5068      TCGA-50-5072      TCGA-50-5930      TCGA-50-5931 
"RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" 
     TCGA-50-5932      TCGA-50-5933      TCGA-50-5935      TCGA-50-5936 
  "RIMS2 MUTATED"   "RIMS2 MUTATED" "RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" 
     TCGA-50-5939      TCGA-50-5941      TCGA-50-5942      TCGA-50-5944 
"RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" 
     TCGA-50-5946      TCGA-50-6590      TCGA-50-6591      TCGA-50-6592 
"RIMS2 WILD-TYPE"   "RIMS2 MUTATED" "RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" 
     TCGA-50-6593      TCGA-50-6594      TCGA-50-6595      TCGA-50-6597 
  "RIMS2 MUTATED" "RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" 
     TCGA-55-1592      TCGA-55-1594      TCGA-55-1595      TCGA-55-1596 
  "RIMS2 MUTATED" "RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" 
     TCGA-55-5899      TCGA-55-6543      TCGA-55-6642      TCGA-55-6712 
  "RIMS2 MUTATED" "RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" 
     TCGA-64-1676      TCGA-64-1677      TCGA-64-1678      TCGA-64-1680 
"RIMS2 WILD-TYPE"   "RIMS2 MUTATED" "RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" 
     TCGA-64-5774      TCGA-64-5775      TCGA-64-5778      TCGA-64-5779 
"RIMS2 WILD-TYPE"   "RIMS2 MUTATED" "RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" 
     TCGA-64-5781      TCGA-64-5815      TCGA-67-3770      TCGA-67-3771 
  "RIMS2 MUTATED"   "RIMS2 MUTATED"   "RIMS2 MUTATED"   "RIMS2 MUTATED" 
     TCGA-67-3772      TCGA-67-3773      TCGA-67-3774      TCGA-67-6215 
"RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" 
     TCGA-67-6216      TCGA-67-6217      TCGA-71-6725      TCGA-73-4658 
"RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE"   "RIMS2 MUTATED" 
     TCGA-73-4659      TCGA-73-4662      TCGA-73-4666      TCGA-73-4668 
  "RIMS2 MUTATED" "RIMS2 WILD-TYPE"   "RIMS2 MUTATED" "RIMS2 WILD-TYPE" 
     TCGA-73-4670      TCGA-73-4675      TCGA-73-4676      TCGA-73-4677 
"RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" 
     TCGA-91-6828      TCGA-91-6829      TCGA-91-6831      TCGA-91-6835 
  "RIMS2 MUTATED" "RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" 
     TCGA-91-6836 
  "RIMS2 MUTATED" 
     TCGA-05-4249      TCGA-05-4250      TCGA-05-4382      TCGA-05-4384 
  "RIMS2 MUTATED" "RIMS2 WILD-TYPE"   "RIMS2 MUTATED" "RIMS2 WILD-TYPE" 
     TCGA-05-4390      TCGA-05-4396      TCGA-05-4397      TCGA-05-4398 
"RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" 
     TCGA-05-4402      TCGA-05-4405      TCGA-05-4415      TCGA-05-4417 
"RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE"   "RIMS2 MUTATED" "RIMS2 WILD-TYPE" 
     TCGA-05-4418      TCGA-05-4420      TCGA-05-4424      TCGA-05-4426 
"RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" 
     TCGA-05-4427      TCGA-05-4430      TCGA-05-4432      TCGA-05-4433 
"RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" 
     TCGA-05-4434      TCGA-05-5420      TCGA-05-5423      TCGA-05-5425 
"RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" 
     TCGA-05-5429      TCGA-05-5715      TCGA-35-3615      TCGA-35-4122 
"RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" 
     TCGA-35-4123      TCGA-35-5375      TCGA-38-4625      TCGA-38-4626 
"RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" 
     TCGA-38-4627      TCGA-38-4628      TCGA-38-4629      TCGA-38-4630 
"RIMS2 WILD-TYPE"   "RIMS2 MUTATED" "RIMS2 WILD-TYPE"   "RIMS2 MUTATED" 
     TCGA-38-4631      TCGA-38-4632      TCGA-38-6178      TCGA-44-2655 
"RIMS2 WILD-TYPE"   "RIMS2 MUTATED" "RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" 
     TCGA-44-2656      TCGA-44-2657      TCGA-44-2659      TCGA-44-2661 
  "RIMS2 MUTATED" "RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" 
     TCGA-44-2662      TCGA-44-2665      TCGA-44-2666      TCGA-44-2668 
"RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" 
     TCGA-44-3396      TCGA-44-3398      TCGA-44-3918      TCGA-44-3919 
"RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" 
     TCGA-44-4112      TCGA-44-5643      TCGA-44-5645      TCGA-44-6144 
"RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" 
     TCGA-44-6145      TCGA-44-6146      TCGA-44-6147      TCGA-44-6148 
"RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" 
     TCGA-44-6774      TCGA-44-6775      TCGA-44-6776      TCGA-44-6777 
"RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" 
     TCGA-44-6778      TCGA-44-6779      TCGA-49-4486      TCGA-49-4487 
  "RIMS2 MUTATED" "RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" 
     TCGA-49-4488      TCGA-49-4490      TCGA-49-4494      TCGA-49-4501 
"RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" 
     TCGA-49-4505      TCGA-49-4506      TCGA-49-4507      TCGA-49-4510 
"RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE"   "RIMS2 MUTATED" 
     TCGA-49-4512      TCGA-49-4514      TCGA-49-6742      TCGA-49-6743 
"RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE"   "RIMS2 MUTATED" "RIMS2 WILD-TYPE" 
     TCGA-49-6744      TCGA-49-6745      TCGA-50-5044      TCGA-50-5045 
"RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" 
     TCGA-50-5049      TCGA-50-5051      TCGA-50-5055      TCGA-50-5066 
  "RIMS2 MUTATED" "RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE"   "RIMS2 MUTATED" 
     TCGA-50-5068      TCGA-50-5072      TCGA-50-5930      TCGA-50-5931 
"RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" 
     TCGA-50-5932      TCGA-50-5933      TCGA-50-5935      TCGA-50-5936 
  "RIMS2 MUTATED"   "RIMS2 MUTATED" "RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" 
     TCGA-50-5939      TCGA-50-5941      TCGA-50-5942      TCGA-50-5944 
"RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" 
     TCGA-50-5946      TCGA-50-6590      TCGA-50-6591      TCGA-50-6592 
"RIMS2 WILD-TYPE"   "RIMS2 MUTATED" "RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" 
     TCGA-50-6593      TCGA-50-6594      TCGA-50-6595      TCGA-50-6597 
  "RIMS2 MUTATED" "RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" 
     TCGA-55-1592      TCGA-55-1594      TCGA-55-1595      TCGA-55-1596 
  "RIMS2 MUTATED" "RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" 
     TCGA-55-5899      TCGA-55-6543      TCGA-55-6642      TCGA-55-6712 
  "RIMS2 MUTATED" "RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" 
     TCGA-64-1676      TCGA-64-1677      TCGA-64-1678      TCGA-64-1680 
"RIMS2 WILD-TYPE"   "RIMS2 MUTATED" "RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" 
     TCGA-64-5774      TCGA-64-5775      TCGA-64-5778      TCGA-64-5779 
"RIMS2 WILD-TYPE"   "RIMS2 MUTATED" "RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" 
     TCGA-64-5781      TCGA-64-5815      TCGA-67-3770      TCGA-67-3771 
  "RIMS2 MUTATED"   "RIMS2 MUTATED"   "RIMS2 MUTATED"   "RIMS2 MUTATED" 
     TCGA-67-3772      TCGA-67-3773      TCGA-67-3774      TCGA-67-6215 
"RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" 
     TCGA-67-6216      TCGA-67-6217      TCGA-71-6725      TCGA-73-4658 
"RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE"   "RIMS2 MUTATED" 
     TCGA-73-4659      TCGA-73-4662      TCGA-73-4666      TCGA-73-4668 
  "RIMS2 MUTATED" "RIMS2 WILD-TYPE"   "RIMS2 MUTATED" "RIMS2 WILD-TYPE" 
     TCGA-73-4670      TCGA-73-4675      TCGA-73-4676      TCGA-73-4677 
"RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" 
     TCGA-91-6828      TCGA-91-6829      TCGA-91-6831      TCGA-91-6835 
  "RIMS2 MUTATED" "RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" 
     TCGA-91-6836 
  "RIMS2 MUTATED" 
[1] "hr=" "1.1"
D12V2, continuous
D12V3, binary
[1] "tbl2"
                 cls
clus              [,1] [,2]
  RIMS2 MUTATED     14   18
  RIMS2 WILD-TYPE   79   61
        clus
vv       RIMS2 MUTATED RIMS2 WILD-TYPE
  FEMALE            14              79
  MALE              18              61
D12V4, continuous
D12V5, multiclass
D12V6, multiclass
    clus
vv   RIMS2 MUTATED RIMS2 WILD-TYPE
  T1             7              34
  T2            20              88
  T3             2              12
  T4             3               5
D12V7, multiclass
       clus
vv      RIMS2 MUTATED RIMS2 WILD-TYPE
  N0               18              77
  N1                8              29
  N2+N3             6              29
D12V8, multiclass
    clus
vv   RIMS2 MUTATED RIMS2 WILD-TYPE
  M0            24             113
  M1             2               7
  MX             5              17
D12V9, multiclass
     clus
vv    RIMS2 MUTATED RIMS2 WILD-TYPE
  I              16              72
  II              7              26
  III             7              32
  IV              2               7
D12V10, binary
[1] "tbl2"
                 cls
clus              [,1] [,2]
  RIMS2 MUTATED      3   29
  RIMS2 WILD-TYPE   13  127
     clus
vv    RIMS2 MUTATED RIMS2 WILD-TYPE
  NO              3              13
  YES            29             127
D12V11, continuous
D12V12, continuous
D12V13, multiclass
                                             clus
vv                                            RIMS2 MUTATED RIMS2 WILD-TYPE
  CURRENT REFORMED SMOKER FOR < OR = 15 YEARS            12              50
  CURRENT REFORMED SMOKER FOR > 15 YEARS                  8              38
  CURRENT SMOKER                                          6              22
  LIFELONG NON-SMOKER                                     3              21
D12V14, continuous

Clustering(13) Variable = REG3A MUTATION ANALYSIS
D13V1, survival
                 sevent
clus2              0  1
  REG3A MUTATED    9  3
  REG3A WILD-TYPE 90 47
  REG3A MUTATED REG3A WILD-TYPE 
             12             137 
  REG3A MUTATED REG3A WILD-TYPE 
              3              47 
$`REG3A MUTATED`
TCGA-05-4396 TCGA-05-4397 TCGA-05-4432 TCGA-44-2656 TCGA-44-2657 TCGA-44-3918 
        9.96        24.03        25.02        19.10        13.15         6.44 
TCGA-44-6775 TCGA-50-5941 TCGA-55-1595 TCGA-64-5779 TCGA-64-5781 TCGA-91-6829 
        2.70         9.37        48.62        16.67        39.52        41.33 

$`REG3A WILD-TYPE`
TCGA-05-4249 TCGA-05-4250 TCGA-05-4382 TCGA-05-4384 TCGA-05-4390 TCGA-05-4398 
       38.07         3.98        19.92        14.01        37.02        47.05 
TCGA-05-4402 TCGA-05-4405 TCGA-05-4415 TCGA-05-4417 TCGA-05-4418 TCGA-05-4420 
        8.02        20.05         2.96        14.93         8.98        29.95 
TCGA-05-4424 TCGA-05-4426 TCGA-05-4427 TCGA-05-4430 TCGA-05-4433 TCGA-05-4434 
       30.02        26.01        26.01        25.02        24.00        15.02 
TCGA-05-5420 TCGA-05-5423 TCGA-05-5425 TCGA-05-5429 TCGA-05-5715 TCGA-35-3615 
        1.02         4.96         2.96         0.99         2.04         0.46 
TCGA-35-4122 TCGA-35-4123 TCGA-35-5375 TCGA-38-4625 TCGA-38-4626 TCGA-38-4627 
        7.36         5.95         8.68        47.61        85.32        37.71 
TCGA-38-4628 TCGA-38-4629 TCGA-38-4630 TCGA-38-4631 TCGA-38-4632 TCGA-38-6178 
       49.02        28.37        35.28        11.64        44.61         5.19 
TCGA-44-2655 TCGA-44-2659 TCGA-44-2661 TCGA-44-2662 TCGA-44-2665 TCGA-44-2666 
       18.87        17.39         3.39        15.78        13.15         3.19 
TCGA-44-2668 TCGA-44-3396 TCGA-44-3398 TCGA-44-3919 TCGA-44-4112 TCGA-44-5643 
        8.09        10.22         8.32         6.21         4.60         3.48 
TCGA-44-5645 TCGA-44-6144 TCGA-44-6145 TCGA-44-6146 TCGA-44-6147 TCGA-44-6148 
        6.84         0.30         3.35         9.93         7.76         3.12 
TCGA-44-6774 TCGA-44-6776 TCGA-44-6777 TCGA-44-6778 TCGA-44-6779 TCGA-49-4486 
        5.42        63.72        32.45        36.49        16.41        76.21 
TCGA-49-4487 TCGA-49-4488 TCGA-49-4490 TCGA-49-4494 TCGA-49-4501 TCGA-49-4505 
       28.11        28.57        12.66        35.54        46.72        14.07 
TCGA-49-4506 TCGA-49-4507 TCGA-49-4510 TCGA-49-4512 TCGA-49-4514 TCGA-49-6742 
       32.84         8.81        29.46        29.75        43.20        15.02 
TCGA-49-6743 TCGA-49-6744 TCGA-49-6745 TCGA-50-5044 TCGA-50-5045 TCGA-50-5049 
       12.13        12.99         4.93        20.48        71.47        48.82 
TCGA-50-5051 TCGA-50-5055 TCGA-50-5066 TCGA-50-5068 TCGA-50-5072 TCGA-50-5930 
       14.96        25.81         9.76        49.28         8.05         9.27 
TCGA-50-5931 TCGA-50-5932 TCGA-50-5933 TCGA-50-5935 TCGA-50-5936 TCGA-50-5939 
        8.78        35.87        77.88        21.47         8.45        15.12 
TCGA-50-5942 TCGA-50-5944 TCGA-50-5946 TCGA-50-6590 TCGA-50-6591 TCGA-50-6592 
        4.44        12.26        11.47        42.31         3.88        25.51 
TCGA-50-6593 TCGA-50-6594 TCGA-50-6595 TCGA-50-6597 TCGA-55-1592 TCGA-55-1594 
       11.05        12.16         6.21        33.37        23.05        38.73 
TCGA-55-1596 TCGA-55-5899 TCGA-55-6543 TCGA-55-6642 TCGA-55-6712 TCGA-64-1676 
       45.17         2.86         0.07        32.61         0.79        56.81 
TCGA-64-1677 TCGA-64-1678 TCGA-64-1680 TCGA-64-5774 TCGA-64-5775 TCGA-64-5778 
       20.65        39.09        37.02        83.84         0.10        30.44 
TCGA-64-5815 TCGA-67-3770 TCGA-67-3771 TCGA-67-3772 TCGA-67-3773 TCGA-67-3774 
        7.33         0.99         1.97         0.59         2.04         0.59 
TCGA-67-6215 TCGA-67-6216 TCGA-67-6217 TCGA-71-6725 TCGA-73-4658 TCGA-73-4659 
        0.89         0.69        13.87         2.01        52.57        23.38 
TCGA-73-4662 TCGA-73-4666 TCGA-73-4668 TCGA-73-4670 TCGA-73-4675 TCGA-73-4676 
       29.95        20.28        15.35         0.46         1.32         4.01 
TCGA-73-4677 TCGA-91-6828 TCGA-91-6831 TCGA-91-6835 TCGA-91-6836 
        1.25         1.22         1.28         1.15         0.36 

  REG3A MUTATED REG3A WILD-TYPE 
           2.70            0.07 
  REG3A MUTATED REG3A WILD-TYPE 
          48.62           85.32 
  REG3A MUTATED REG3A WILD-TYPE 
         17.885          13.150 
[1] "2.7 - 48.6 (17.9)" "0.1 - 85.3 (13.2)"
     TCGA-05-4249      TCGA-05-4250      TCGA-05-4382      TCGA-05-4384 
"REG3A WILD-TYPE" "REG3A WILD-TYPE" "REG3A WILD-TYPE" "REG3A WILD-TYPE" 
     TCGA-05-4390      TCGA-05-4396      TCGA-05-4397      TCGA-05-4398 
"REG3A WILD-TYPE"   "REG3A MUTATED"   "REG3A MUTATED" "REG3A WILD-TYPE" 
     TCGA-05-4402      TCGA-05-4405      TCGA-05-4415      TCGA-05-4417 
"REG3A WILD-TYPE" "REG3A WILD-TYPE" "REG3A WILD-TYPE" "REG3A WILD-TYPE" 
     TCGA-05-4418      TCGA-05-4420      TCGA-05-4424      TCGA-05-4426 
"REG3A WILD-TYPE" "REG3A WILD-TYPE" "REG3A WILD-TYPE" "REG3A WILD-TYPE" 
     TCGA-05-4427      TCGA-05-4430      TCGA-05-4432      TCGA-05-4433 
"REG3A WILD-TYPE" "REG3A WILD-TYPE"   "REG3A MUTATED" "REG3A WILD-TYPE" 
     TCGA-05-4434      TCGA-05-5420      TCGA-05-5423      TCGA-05-5425 
"REG3A WILD-TYPE" "REG3A WILD-TYPE" "REG3A WILD-TYPE" "REG3A WILD-TYPE" 
     TCGA-05-5429      TCGA-05-5715      TCGA-35-3615      TCGA-35-4122 
"REG3A WILD-TYPE" "REG3A WILD-TYPE" "REG3A WILD-TYPE" "REG3A WILD-TYPE" 
     TCGA-35-4123      TCGA-35-5375      TCGA-38-4625      TCGA-38-4626 
"REG3A WILD-TYPE" "REG3A WILD-TYPE" "REG3A WILD-TYPE" "REG3A WILD-TYPE" 
     TCGA-38-4627      TCGA-38-4628      TCGA-38-4629      TCGA-38-4630 
"REG3A WILD-TYPE" "REG3A WILD-TYPE" "REG3A WILD-TYPE" "REG3A WILD-TYPE" 
     TCGA-38-4631      TCGA-38-4632      TCGA-38-6178      TCGA-44-2655 
"REG3A WILD-TYPE" "REG3A WILD-TYPE" "REG3A WILD-TYPE" "REG3A WILD-TYPE" 
     TCGA-44-2656      TCGA-44-2657      TCGA-44-2659      TCGA-44-2661 
  "REG3A MUTATED"   "REG3A MUTATED" "REG3A WILD-TYPE" "REG3A WILD-TYPE" 
     TCGA-44-2662      TCGA-44-2665      TCGA-44-2666      TCGA-44-2668 
"REG3A WILD-TYPE" "REG3A WILD-TYPE" "REG3A WILD-TYPE" "REG3A WILD-TYPE" 
     TCGA-44-3396      TCGA-44-3398      TCGA-44-3918      TCGA-44-3919 
"REG3A WILD-TYPE" "REG3A WILD-TYPE"   "REG3A MUTATED" "REG3A WILD-TYPE" 
     TCGA-44-4112      TCGA-44-5643      TCGA-44-5645      TCGA-44-6144 
"REG3A WILD-TYPE" "REG3A WILD-TYPE" "REG3A WILD-TYPE" "REG3A WILD-TYPE" 
     TCGA-44-6145      TCGA-44-6146      TCGA-44-6147      TCGA-44-6148 
"REG3A WILD-TYPE" "REG3A WILD-TYPE" "REG3A WILD-TYPE" "REG3A WILD-TYPE" 
     TCGA-44-6774      TCGA-44-6775      TCGA-44-6776      TCGA-44-6777 
"REG3A WILD-TYPE"   "REG3A MUTATED" "REG3A WILD-TYPE" "REG3A WILD-TYPE" 
     TCGA-44-6778      TCGA-44-6779      TCGA-49-4486      TCGA-49-4487 
"REG3A WILD-TYPE" "REG3A WILD-TYPE" "REG3A WILD-TYPE" "REG3A WILD-TYPE" 
     TCGA-49-4488      TCGA-49-4490      TCGA-49-4494      TCGA-49-4501 
"REG3A WILD-TYPE" "REG3A WILD-TYPE" "REG3A WILD-TYPE" "REG3A WILD-TYPE" 
     TCGA-49-4505      TCGA-49-4506      TCGA-49-4507      TCGA-49-4510 
"REG3A WILD-TYPE" "REG3A WILD-TYPE" "REG3A WILD-TYPE" "REG3A WILD-TYPE" 
     TCGA-49-4512      TCGA-49-4514      TCGA-49-6742      TCGA-49-6743 
"REG3A WILD-TYPE" "REG3A WILD-TYPE" "REG3A WILD-TYPE" "REG3A WILD-TYPE" 
     TCGA-49-6744      TCGA-49-6745      TCGA-50-5044      TCGA-50-5045 
"REG3A WILD-TYPE" "REG3A WILD-TYPE" "REG3A WILD-TYPE" "REG3A WILD-TYPE" 
     TCGA-50-5049      TCGA-50-5051      TCGA-50-5055      TCGA-50-5066 
"REG3A WILD-TYPE" "REG3A WILD-TYPE" "REG3A WILD-TYPE" "REG3A WILD-TYPE" 
     TCGA-50-5068      TCGA-50-5072      TCGA-50-5930      TCGA-50-5931 
"REG3A WILD-TYPE" "REG3A WILD-TYPE" "REG3A WILD-TYPE" "REG3A WILD-TYPE" 
     TCGA-50-5932      TCGA-50-5933      TCGA-50-5935      TCGA-50-5936 
"REG3A WILD-TYPE" "REG3A WILD-TYPE" "REG3A WILD-TYPE" "REG3A WILD-TYPE" 
     TCGA-50-5939      TCGA-50-5941      TCGA-50-5942      TCGA-50-5944 
"REG3A WILD-TYPE"   "REG3A MUTATED" "REG3A WILD-TYPE" "REG3A WILD-TYPE" 
     TCGA-50-5946      TCGA-50-6590      TCGA-50-6591      TCGA-50-6592 
"REG3A WILD-TYPE" "REG3A WILD-TYPE" "REG3A WILD-TYPE" "REG3A WILD-TYPE" 
     TCGA-50-6593      TCGA-50-6594      TCGA-50-6595      TCGA-50-6597 
"REG3A WILD-TYPE" "REG3A WILD-TYPE" "REG3A WILD-TYPE" "REG3A WILD-TYPE" 
     TCGA-55-1592      TCGA-55-1594      TCGA-55-1595      TCGA-55-1596 
"REG3A WILD-TYPE" "REG3A WILD-TYPE"   "REG3A MUTATED" "REG3A WILD-TYPE" 
     TCGA-55-5899      TCGA-55-6543      TCGA-55-6642      TCGA-55-6712 
"REG3A WILD-TYPE" "REG3A WILD-TYPE" "REG3A WILD-TYPE" "REG3A WILD-TYPE" 
     TCGA-64-1676      TCGA-64-1677      TCGA-64-1678      TCGA-64-1680 
"REG3A WILD-TYPE" "REG3A WILD-TYPE" "REG3A WILD-TYPE" "REG3A WILD-TYPE" 
     TCGA-64-5774      TCGA-64-5775      TCGA-64-5778      TCGA-64-5779 
"REG3A WILD-TYPE" "REG3A WILD-TYPE" "REG3A WILD-TYPE"   "REG3A MUTATED" 
     TCGA-64-5781      TCGA-64-5815      TCGA-67-3770      TCGA-67-3771 
  "REG3A MUTATED" "REG3A WILD-TYPE" "REG3A WILD-TYPE" "REG3A WILD-TYPE" 
     TCGA-67-3772      TCGA-67-3773      TCGA-67-3774      TCGA-67-6215 
"REG3A WILD-TYPE" "REG3A WILD-TYPE" "REG3A WILD-TYPE" "REG3A WILD-TYPE" 
     TCGA-67-6216      TCGA-67-6217      TCGA-71-6725      TCGA-73-4658 
"REG3A WILD-TYPE" "REG3A WILD-TYPE" "REG3A WILD-TYPE" "REG3A WILD-TYPE" 
     TCGA-73-4659      TCGA-73-4662      TCGA-73-4666      TCGA-73-4668 
"REG3A WILD-TYPE" "REG3A WILD-TYPE" "REG3A WILD-TYPE" "REG3A WILD-TYPE" 
     TCGA-73-4670      TCGA-73-4675      TCGA-73-4676      TCGA-73-4677 
"REG3A WILD-TYPE" "REG3A WILD-TYPE" "REG3A WILD-TYPE" "REG3A WILD-TYPE" 
     TCGA-91-6828      TCGA-91-6829      TCGA-91-6831      TCGA-91-6835 
"REG3A WILD-TYPE"   "REG3A MUTATED" "REG3A WILD-TYPE" "REG3A WILD-TYPE" 
     TCGA-91-6836 
"REG3A WILD-TYPE" 
     TCGA-05-4249      TCGA-05-4250      TCGA-05-4382      TCGA-05-4384 
"REG3A WILD-TYPE" "REG3A WILD-TYPE" "REG3A WILD-TYPE" "REG3A WILD-TYPE" 
     TCGA-05-4390      TCGA-05-4396      TCGA-05-4397      TCGA-05-4398 
"REG3A WILD-TYPE"   "REG3A MUTATED"   "REG3A MUTATED" "REG3A WILD-TYPE" 
     TCGA-05-4402      TCGA-05-4405      TCGA-05-4415      TCGA-05-4417 
"REG3A WILD-TYPE" "REG3A WILD-TYPE" "REG3A WILD-TYPE" "REG3A WILD-TYPE" 
     TCGA-05-4418      TCGA-05-4420      TCGA-05-4424      TCGA-05-4426 
"REG3A WILD-TYPE" "REG3A WILD-TYPE" "REG3A WILD-TYPE" "REG3A WILD-TYPE" 
     TCGA-05-4427      TCGA-05-4430      TCGA-05-4432      TCGA-05-4433 
"REG3A WILD-TYPE" "REG3A WILD-TYPE"   "REG3A MUTATED" "REG3A WILD-TYPE" 
     TCGA-05-4434      TCGA-05-5420      TCGA-05-5423      TCGA-05-5425 
"REG3A WILD-TYPE" "REG3A WILD-TYPE" "REG3A WILD-TYPE" "REG3A WILD-TYPE" 
     TCGA-05-5429      TCGA-05-5715      TCGA-35-3615      TCGA-35-4122 
"REG3A WILD-TYPE" "REG3A WILD-TYPE" "REG3A WILD-TYPE" "REG3A WILD-TYPE" 
     TCGA-35-4123      TCGA-35-5375      TCGA-38-4625      TCGA-38-4626 
"REG3A WILD-TYPE" "REG3A WILD-TYPE" "REG3A WILD-TYPE" "REG3A WILD-TYPE" 
     TCGA-38-4627      TCGA-38-4628      TCGA-38-4629      TCGA-38-4630 
"REG3A WILD-TYPE" "REG3A WILD-TYPE" "REG3A WILD-TYPE" "REG3A WILD-TYPE" 
     TCGA-38-4631      TCGA-38-4632      TCGA-38-6178      TCGA-44-2655 
"REG3A WILD-TYPE" "REG3A WILD-TYPE" "REG3A WILD-TYPE" "REG3A WILD-TYPE" 
     TCGA-44-2656      TCGA-44-2657      TCGA-44-2659      TCGA-44-2661 
  "REG3A MUTATED"   "REG3A MUTATED" "REG3A WILD-TYPE" "REG3A WILD-TYPE" 
     TCGA-44-2662      TCGA-44-2665      TCGA-44-2666      TCGA-44-2668 
"REG3A WILD-TYPE" "REG3A WILD-TYPE" "REG3A WILD-TYPE" "REG3A WILD-TYPE" 
     TCGA-44-3396      TCGA-44-3398      TCGA-44-3918      TCGA-44-3919 
"REG3A WILD-TYPE" "REG3A WILD-TYPE"   "REG3A MUTATED" "REG3A WILD-TYPE" 
     TCGA-44-4112      TCGA-44-5643      TCGA-44-5645      TCGA-44-6144 
"REG3A WILD-TYPE" "REG3A WILD-TYPE" "REG3A WILD-TYPE" "REG3A WILD-TYPE" 
     TCGA-44-6145      TCGA-44-6146      TCGA-44-6147      TCGA-44-6148 
"REG3A WILD-TYPE" "REG3A WILD-TYPE" "REG3A WILD-TYPE" "REG3A WILD-TYPE" 
     TCGA-44-6774      TCGA-44-6775      TCGA-44-6776      TCGA-44-6777 
"REG3A WILD-TYPE"   "REG3A MUTATED" "REG3A WILD-TYPE" "REG3A WILD-TYPE" 
     TCGA-44-6778      TCGA-44-6779      TCGA-49-4486      TCGA-49-4487 
"REG3A WILD-TYPE" "REG3A WILD-TYPE" "REG3A WILD-TYPE" "REG3A WILD-TYPE" 
     TCGA-49-4488      TCGA-49-4490      TCGA-49-4494      TCGA-49-4501 
"REG3A WILD-TYPE" "REG3A WILD-TYPE" "REG3A WILD-TYPE" "REG3A WILD-TYPE" 
     TCGA-49-4505      TCGA-49-4506      TCGA-49-4507      TCGA-49-4510 
"REG3A WILD-TYPE" "REG3A WILD-TYPE" "REG3A WILD-TYPE" "REG3A WILD-TYPE" 
     TCGA-49-4512      TCGA-49-4514      TCGA-49-6742      TCGA-49-6743 
"REG3A WILD-TYPE" "REG3A WILD-TYPE" "REG3A WILD-TYPE" "REG3A WILD-TYPE" 
     TCGA-49-6744      TCGA-49-6745      TCGA-50-5044      TCGA-50-5045 
"REG3A WILD-TYPE" "REG3A WILD-TYPE" "REG3A WILD-TYPE" "REG3A WILD-TYPE" 
     TCGA-50-5049      TCGA-50-5051      TCGA-50-5055      TCGA-50-5066 
"REG3A WILD-TYPE" "REG3A WILD-TYPE" "REG3A WILD-TYPE" "REG3A WILD-TYPE" 
     TCGA-50-5068      TCGA-50-5072      TCGA-50-5930      TCGA-50-5931 
"REG3A WILD-TYPE" "REG3A WILD-TYPE" "REG3A WILD-TYPE" "REG3A WILD-TYPE" 
     TCGA-50-5932      TCGA-50-5933      TCGA-50-5935      TCGA-50-5936 
"REG3A WILD-TYPE" "REG3A WILD-TYPE" "REG3A WILD-TYPE" "REG3A WILD-TYPE" 
     TCGA-50-5939      TCGA-50-5941      TCGA-50-5942      TCGA-50-5944 
"REG3A WILD-TYPE"   "REG3A MUTATED" "REG3A WILD-TYPE" "REG3A WILD-TYPE" 
     TCGA-50-5946      TCGA-50-6590      TCGA-50-6591      TCGA-50-6592 
"REG3A WILD-TYPE" "REG3A WILD-TYPE" "REG3A WILD-TYPE" "REG3A WILD-TYPE" 
     TCGA-50-6593      TCGA-50-6594      TCGA-50-6595      TCGA-50-6597 
"REG3A WILD-TYPE" "REG3A WILD-TYPE" "REG3A WILD-TYPE" "REG3A WILD-TYPE" 
     TCGA-55-1592      TCGA-55-1594      TCGA-55-1595      TCGA-55-1596 
"REG3A WILD-TYPE" "REG3A WILD-TYPE"   "REG3A MUTATED" "REG3A WILD-TYPE" 
     TCGA-55-5899      TCGA-55-6543      TCGA-55-6642      TCGA-55-6712 
"REG3A WILD-TYPE" "REG3A WILD-TYPE" "REG3A WILD-TYPE" "REG3A WILD-TYPE" 
     TCGA-64-1676      TCGA-64-1677      TCGA-64-1678      TCGA-64-1680 
"REG3A WILD-TYPE" "REG3A WILD-TYPE" "REG3A WILD-TYPE" "REG3A WILD-TYPE" 
     TCGA-64-5774      TCGA-64-5775      TCGA-64-5778      TCGA-64-5779 
"REG3A WILD-TYPE" "REG3A WILD-TYPE" "REG3A WILD-TYPE"   "REG3A MUTATED" 
     TCGA-64-5781      TCGA-64-5815      TCGA-67-3770      TCGA-67-3771 
  "REG3A MUTATED" "REG3A WILD-TYPE" "REG3A WILD-TYPE" "REG3A WILD-TYPE" 
     TCGA-67-3772      TCGA-67-3773      TCGA-67-3774      TCGA-67-6215 
"REG3A WILD-TYPE" "REG3A WILD-TYPE" "REG3A WILD-TYPE" "REG3A WILD-TYPE" 
     TCGA-67-6216      TCGA-67-6217      TCGA-71-6725      TCGA-73-4658 
"REG3A WILD-TYPE" "REG3A WILD-TYPE" "REG3A WILD-TYPE" "REG3A WILD-TYPE" 
     TCGA-73-4659      TCGA-73-4662      TCGA-73-4666      TCGA-73-4668 
"REG3A WILD-TYPE" "REG3A WILD-TYPE" "REG3A WILD-TYPE" "REG3A WILD-TYPE" 
     TCGA-73-4670      TCGA-73-4675      TCGA-73-4676      TCGA-73-4677 
"REG3A WILD-TYPE" "REG3A WILD-TYPE" "REG3A WILD-TYPE" "REG3A WILD-TYPE" 
     TCGA-91-6828      TCGA-91-6829      TCGA-91-6831      TCGA-91-6835 
"REG3A WILD-TYPE"   "REG3A MUTATED" "REG3A WILD-TYPE" "REG3A WILD-TYPE" 
     TCGA-91-6836 
"REG3A WILD-TYPE" 
     TCGA-05-4249      TCGA-05-4250      TCGA-05-4382      TCGA-05-4384 
"REG3A WILD-TYPE" "REG3A WILD-TYPE" "REG3A WILD-TYPE" "REG3A WILD-TYPE" 
     TCGA-05-4390      TCGA-05-4396      TCGA-05-4397      TCGA-05-4398 
"REG3A WILD-TYPE"   "REG3A MUTATED"   "REG3A MUTATED" "REG3A WILD-TYPE" 
     TCGA-05-4402      TCGA-05-4405      TCGA-05-4415      TCGA-05-4417 
"REG3A WILD-TYPE" "REG3A WILD-TYPE" "REG3A WILD-TYPE" "REG3A WILD-TYPE" 
     TCGA-05-4418      TCGA-05-4420      TCGA-05-4424      TCGA-05-4426 
"REG3A WILD-TYPE" "REG3A WILD-TYPE" "REG3A WILD-TYPE" "REG3A WILD-TYPE" 
     TCGA-05-4427      TCGA-05-4430      TCGA-05-4432      TCGA-05-4433 
"REG3A WILD-TYPE" "REG3A WILD-TYPE"   "REG3A MUTATED" "REG3A WILD-TYPE" 
     TCGA-05-4434      TCGA-05-5420      TCGA-05-5423      TCGA-05-5425 
"REG3A WILD-TYPE" "REG3A WILD-TYPE" "REG3A WILD-TYPE" "REG3A WILD-TYPE" 
     TCGA-05-5429      TCGA-05-5715      TCGA-35-3615      TCGA-35-4122 
"REG3A WILD-TYPE" "REG3A WILD-TYPE" "REG3A WILD-TYPE" "REG3A WILD-TYPE" 
     TCGA-35-4123      TCGA-35-5375      TCGA-38-4625      TCGA-38-4626 
"REG3A WILD-TYPE" "REG3A WILD-TYPE" "REG3A WILD-TYPE" "REG3A WILD-TYPE" 
     TCGA-38-4627      TCGA-38-4628      TCGA-38-4629      TCGA-38-4630 
"REG3A WILD-TYPE" "REG3A WILD-TYPE" "REG3A WILD-TYPE" "REG3A WILD-TYPE" 
     TCGA-38-4631      TCGA-38-4632      TCGA-38-6178      TCGA-44-2655 
"REG3A WILD-TYPE" "REG3A WILD-TYPE" "REG3A WILD-TYPE" "REG3A WILD-TYPE" 
     TCGA-44-2656      TCGA-44-2657      TCGA-44-2659      TCGA-44-2661 
  "REG3A MUTATED"   "REG3A MUTATED" "REG3A WILD-TYPE" "REG3A WILD-TYPE" 
     TCGA-44-2662      TCGA-44-2665      TCGA-44-2666      TCGA-44-2668 
"REG3A WILD-TYPE" "REG3A WILD-TYPE" "REG3A WILD-TYPE" "REG3A WILD-TYPE" 
     TCGA-44-3396      TCGA-44-3398      TCGA-44-3918      TCGA-44-3919 
"REG3A WILD-TYPE" "REG3A WILD-TYPE"   "REG3A MUTATED" "REG3A WILD-TYPE" 
     TCGA-44-4112      TCGA-44-5643      TCGA-44-5645      TCGA-44-6144 
"REG3A WILD-TYPE" "REG3A WILD-TYPE" "REG3A WILD-TYPE" "REG3A WILD-TYPE" 
     TCGA-44-6145      TCGA-44-6146      TCGA-44-6147      TCGA-44-6148 
"REG3A WILD-TYPE" "REG3A WILD-TYPE" "REG3A WILD-TYPE" "REG3A WILD-TYPE" 
     TCGA-44-6774      TCGA-44-6775      TCGA-44-6776      TCGA-44-6777 
"REG3A WILD-TYPE"   "REG3A MUTATED" "REG3A WILD-TYPE" "REG3A WILD-TYPE" 
     TCGA-44-6778      TCGA-44-6779      TCGA-49-4486      TCGA-49-4487 
"REG3A WILD-TYPE" "REG3A WILD-TYPE" "REG3A WILD-TYPE" "REG3A WILD-TYPE" 
     TCGA-49-4488      TCGA-49-4490      TCGA-49-4494      TCGA-49-4501 
"REG3A WILD-TYPE" "REG3A WILD-TYPE" "REG3A WILD-TYPE" "REG3A WILD-TYPE" 
     TCGA-49-4505      TCGA-49-4506      TCGA-49-4507      TCGA-49-4510 
"REG3A WILD-TYPE" "REG3A WILD-TYPE" "REG3A WILD-TYPE" "REG3A WILD-TYPE" 
     TCGA-49-4512      TCGA-49-4514      TCGA-49-6742      TCGA-49-6743 
"REG3A WILD-TYPE" "REG3A WILD-TYPE" "REG3A WILD-TYPE" "REG3A WILD-TYPE" 
     TCGA-49-6744      TCGA-49-6745      TCGA-50-5044      TCGA-50-5045 
"REG3A WILD-TYPE" "REG3A WILD-TYPE" "REG3A WILD-TYPE" "REG3A WILD-TYPE" 
     TCGA-50-5049      TCGA-50-5051      TCGA-50-5055      TCGA-50-5066 
"REG3A WILD-TYPE" "REG3A WILD-TYPE" "REG3A WILD-TYPE" "REG3A WILD-TYPE" 
     TCGA-50-5068      TCGA-50-5072      TCGA-50-5930      TCGA-50-5931 
"REG3A WILD-TYPE" "REG3A WILD-TYPE" "REG3A WILD-TYPE" "REG3A WILD-TYPE" 
     TCGA-50-5932      TCGA-50-5933      TCGA-50-5935      TCGA-50-5936 
"REG3A WILD-TYPE" "REG3A WILD-TYPE" "REG3A WILD-TYPE" "REG3A WILD-TYPE" 
     TCGA-50-5939      TCGA-50-5941      TCGA-50-5942      TCGA-50-5944 
"REG3A WILD-TYPE"   "REG3A MUTATED" "REG3A WILD-TYPE" "REG3A WILD-TYPE" 
     TCGA-50-5946      TCGA-50-6590      TCGA-50-6591      TCGA-50-6592 
"REG3A WILD-TYPE" "REG3A WILD-TYPE" "REG3A WILD-TYPE" "REG3A WILD-TYPE" 
     TCGA-50-6593      TCGA-50-6594      TCGA-50-6595      TCGA-50-6597 
"REG3A WILD-TYPE" "REG3A WILD-TYPE" "REG3A WILD-TYPE" "REG3A WILD-TYPE" 
     TCGA-55-1592      TCGA-55-1594      TCGA-55-1595      TCGA-55-1596 
"REG3A WILD-TYPE" "REG3A WILD-TYPE"   "REG3A MUTATED" "REG3A WILD-TYPE" 
     TCGA-55-5899      TCGA-55-6543      TCGA-55-6642      TCGA-55-6712 
"REG3A WILD-TYPE" "REG3A WILD-TYPE" "REG3A WILD-TYPE" "REG3A WILD-TYPE" 
     TCGA-64-1676      TCGA-64-1677      TCGA-64-1678      TCGA-64-1680 
"REG3A WILD-TYPE" "REG3A WILD-TYPE" "REG3A WILD-TYPE" "REG3A WILD-TYPE" 
     TCGA-64-5774      TCGA-64-5775      TCGA-64-5778      TCGA-64-5779 
"REG3A WILD-TYPE" "REG3A WILD-TYPE" "REG3A WILD-TYPE"   "REG3A MUTATED" 
     TCGA-64-5781      TCGA-64-5815      TCGA-67-3770      TCGA-67-3771 
  "REG3A MUTATED" "REG3A WILD-TYPE" "REG3A WILD-TYPE" "REG3A WILD-TYPE" 
     TCGA-67-3772      TCGA-67-3773      TCGA-67-3774      TCGA-67-6215 
"REG3A WILD-TYPE" "REG3A WILD-TYPE" "REG3A WILD-TYPE" "REG3A WILD-TYPE" 
     TCGA-67-6216      TCGA-67-6217      TCGA-71-6725      TCGA-73-4658 
"REG3A WILD-TYPE" "REG3A WILD-TYPE" "REG3A WILD-TYPE" "REG3A WILD-TYPE" 
     TCGA-73-4659      TCGA-73-4662      TCGA-73-4666      TCGA-73-4668 
"REG3A WILD-TYPE" "REG3A WILD-TYPE" "REG3A WILD-TYPE" "REG3A WILD-TYPE" 
     TCGA-73-4670      TCGA-73-4675      TCGA-73-4676      TCGA-73-4677 
"REG3A WILD-TYPE" "REG3A WILD-TYPE" "REG3A WILD-TYPE" "REG3A WILD-TYPE" 
     TCGA-91-6828      TCGA-91-6829      TCGA-91-6831      TCGA-91-6835 
"REG3A WILD-TYPE"   "REG3A MUTATED" "REG3A WILD-TYPE" "REG3A WILD-TYPE" 
     TCGA-91-6836 
"REG3A WILD-TYPE" 
[1] "hr=" "1.4"
D13V2, continuous
D13V3, binary
[1] "tbl2"
                 cls
clus              [,1] [,2]
  REG3A MUTATED      6    8
  REG3A WILD-TYPE   87   71
        clus
vv       REG3A MUTATED REG3A WILD-TYPE
  FEMALE             6              87
  MALE               8              71
D13V4, continuous
D13V5, multiclass
D13V6, multiclass
    clus
vv   REG3A MUTATED REG3A WILD-TYPE
  T1             3              38
  T2            10              98
  T3             0              14
  T4             1               7
D13V7, multiclass
       clus
vv      REG3A MUTATED REG3A WILD-TYPE
  N0                7              88
  N1                4              33
  N2+N3             2              33
D13V8, multiclass
    clus
vv   REG3A MUTATED REG3A WILD-TYPE
  M0            12             125
  M1             0               9
  MX             2              20
D13V9, multiclass
     clus
vv    REG3A MUTATED REG3A WILD-TYPE
  I               8              80
  II              3              30
  III             3              36
  IV              0               9
D13V10, binary
[1] "tbl2"
                 cls
clus              [,1] [,2]
  REG3A MUTATED      0   14
  REG3A WILD-TYPE   16  142
     clus
vv    REG3A MUTATED REG3A WILD-TYPE
  NO              0              16
  YES            14             142
D13V11, continuous
D13V12, continuous
D13V13, multiclass
                                             clus
vv                                            REG3A MUTATED REG3A WILD-TYPE
  CURRENT REFORMED SMOKER FOR < OR = 15 YEARS             8              54
  CURRENT REFORMED SMOKER FOR > 15 YEARS                  3              43
  CURRENT SMOKER                                          3              25
  LIFELONG NON-SMOKER                                     0              24
D13V14, continuous

Clustering(14) Variable = CDKN2A MUTATION ANALYSIS
D14V1, survival
                  sevent
clus2               0  1
  CDKN2A MUTATED    6  2
  CDKN2A WILD-TYPE 93 48
  CDKN2A MUTATED CDKN2A WILD-TYPE 
               8              141 
  CDKN2A MUTATED CDKN2A WILD-TYPE 
               2               48 
$`CDKN2A MUTATED`
TCGA-05-4426 TCGA-05-4433 TCGA-38-4625 TCGA-44-5645 TCGA-49-4505 TCGA-50-6595 
       26.01        24.00        47.61         6.84        14.07         6.21 
TCGA-55-1594 TCGA-67-3771 
       38.73         1.97 

$`CDKN2A WILD-TYPE`
TCGA-05-4249 TCGA-05-4250 TCGA-05-4382 TCGA-05-4384 TCGA-05-4390 TCGA-05-4396 
       38.07         3.98        19.92        14.01        37.02         9.96 
TCGA-05-4397 TCGA-05-4398 TCGA-05-4402 TCGA-05-4405 TCGA-05-4415 TCGA-05-4417 
       24.03        47.05         8.02        20.05         2.96        14.93 
TCGA-05-4418 TCGA-05-4420 TCGA-05-4424 TCGA-05-4427 TCGA-05-4430 TCGA-05-4432 
        8.98        29.95        30.02        26.01        25.02        25.02 
TCGA-05-4434 TCGA-05-5420 TCGA-05-5423 TCGA-05-5425 TCGA-05-5429 TCGA-05-5715 
       15.02         1.02         4.96         2.96         0.99         2.04 
TCGA-35-3615 TCGA-35-4122 TCGA-35-4123 TCGA-35-5375 TCGA-38-4626 TCGA-38-4627 
        0.46         7.36         5.95         8.68        85.32        37.71 
TCGA-38-4628 TCGA-38-4629 TCGA-38-4630 TCGA-38-4631 TCGA-38-4632 TCGA-38-6178 
       49.02        28.37        35.28        11.64        44.61         5.19 
TCGA-44-2655 TCGA-44-2656 TCGA-44-2657 TCGA-44-2659 TCGA-44-2661 TCGA-44-2662 
       18.87        19.10        13.15        17.39         3.39        15.78 
TCGA-44-2665 TCGA-44-2666 TCGA-44-2668 TCGA-44-3396 TCGA-44-3398 TCGA-44-3918 
       13.15         3.19         8.09        10.22         8.32         6.44 
TCGA-44-3919 TCGA-44-4112 TCGA-44-5643 TCGA-44-6144 TCGA-44-6145 TCGA-44-6146 
        6.21         4.60         3.48         0.30         3.35         9.93 
TCGA-44-6147 TCGA-44-6148 TCGA-44-6774 TCGA-44-6775 TCGA-44-6776 TCGA-44-6777 
        7.76         3.12         5.42         2.70        63.72        32.45 
TCGA-44-6778 TCGA-44-6779 TCGA-49-4486 TCGA-49-4487 TCGA-49-4488 TCGA-49-4490 
       36.49        16.41        76.21        28.11        28.57        12.66 
TCGA-49-4494 TCGA-49-4501 TCGA-49-4506 TCGA-49-4507 TCGA-49-4510 TCGA-49-4512 
       35.54        46.72        32.84         8.81        29.46        29.75 
TCGA-49-4514 TCGA-49-6742 TCGA-49-6743 TCGA-49-6744 TCGA-49-6745 TCGA-50-5044 
       43.20        15.02        12.13        12.99         4.93        20.48 
TCGA-50-5045 TCGA-50-5049 TCGA-50-5051 TCGA-50-5055 TCGA-50-5066 TCGA-50-5068 
       71.47        48.82        14.96        25.81         9.76        49.28 
TCGA-50-5072 TCGA-50-5930 TCGA-50-5931 TCGA-50-5932 TCGA-50-5933 TCGA-50-5935 
        8.05         9.27         8.78        35.87        77.88        21.47 
TCGA-50-5936 TCGA-50-5939 TCGA-50-5941 TCGA-50-5942 TCGA-50-5944 TCGA-50-5946 
        8.45        15.12         9.37         4.44        12.26        11.47 
TCGA-50-6590 TCGA-50-6591 TCGA-50-6592 TCGA-50-6593 TCGA-50-6594 TCGA-50-6597 
       42.31         3.88        25.51        11.05        12.16        33.37 
TCGA-55-1592 TCGA-55-1595 TCGA-55-1596 TCGA-55-5899 TCGA-55-6543 TCGA-55-6642 
       23.05        48.62        45.17         2.86         0.07        32.61 
TCGA-55-6712 TCGA-64-1676 TCGA-64-1677 TCGA-64-1678 TCGA-64-1680 TCGA-64-5774 
        0.79        56.81        20.65        39.09        37.02        83.84 
TCGA-64-5775 TCGA-64-5778 TCGA-64-5779 TCGA-64-5781 TCGA-64-5815 TCGA-67-3770 
        0.10        30.44        16.67        39.52         7.33         0.99 
TCGA-67-3772 TCGA-67-3773 TCGA-67-3774 TCGA-67-6215 TCGA-67-6216 TCGA-67-6217 
        0.59         2.04         0.59         0.89         0.69        13.87 
TCGA-71-6725 TCGA-73-4658 TCGA-73-4659 TCGA-73-4662 TCGA-73-4666 TCGA-73-4668 
        2.01        52.57        23.38        29.95        20.28        15.35 
TCGA-73-4670 TCGA-73-4675 TCGA-73-4676 TCGA-73-4677 TCGA-91-6828 TCGA-91-6829 
        0.46         1.32         4.01         1.25         1.22        41.33 
TCGA-91-6831 TCGA-91-6835 TCGA-91-6836 
        1.28         1.15         0.36 

  CDKN2A MUTATED CDKN2A WILD-TYPE 
            1.97             0.07 
  CDKN2A MUTATED CDKN2A WILD-TYPE 
           47.61            85.32 
  CDKN2A MUTATED CDKN2A WILD-TYPE 
          19.035           13.150 
[1] "2.0 - 47.6 (19.0)" "0.1 - 85.3 (13.2)"
      TCGA-05-4249       TCGA-05-4250       TCGA-05-4382       TCGA-05-4384 
"CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" 
      TCGA-05-4390       TCGA-05-4396       TCGA-05-4397       TCGA-05-4398 
"CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" 
      TCGA-05-4402       TCGA-05-4405       TCGA-05-4415       TCGA-05-4417 
"CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" 
      TCGA-05-4418       TCGA-05-4420       TCGA-05-4424       TCGA-05-4426 
"CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE"   "CDKN2A MUTATED" 
      TCGA-05-4427       TCGA-05-4430       TCGA-05-4432       TCGA-05-4433 
"CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE"   "CDKN2A MUTATED" 
      TCGA-05-4434       TCGA-05-5420       TCGA-05-5423       TCGA-05-5425 
"CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" 
      TCGA-05-5429       TCGA-05-5715       TCGA-35-3615       TCGA-35-4122 
"CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" 
      TCGA-35-4123       TCGA-35-5375       TCGA-38-4625       TCGA-38-4626 
"CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE"   "CDKN2A MUTATED" "CDKN2A WILD-TYPE" 
      TCGA-38-4627       TCGA-38-4628       TCGA-38-4629       TCGA-38-4630 
"CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" 
      TCGA-38-4631       TCGA-38-4632       TCGA-38-6178       TCGA-44-2655 
"CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" 
      TCGA-44-2656       TCGA-44-2657       TCGA-44-2659       TCGA-44-2661 
"CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" 
      TCGA-44-2662       TCGA-44-2665       TCGA-44-2666       TCGA-44-2668 
"CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" 
      TCGA-44-3396       TCGA-44-3398       TCGA-44-3918       TCGA-44-3919 
"CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" 
      TCGA-44-4112       TCGA-44-5643       TCGA-44-5645       TCGA-44-6144 
"CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE"   "CDKN2A MUTATED" "CDKN2A WILD-TYPE" 
      TCGA-44-6145       TCGA-44-6146       TCGA-44-6147       TCGA-44-6148 
"CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" 
      TCGA-44-6774       TCGA-44-6775       TCGA-44-6776       TCGA-44-6777 
"CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" 
      TCGA-44-6778       TCGA-44-6779       TCGA-49-4486       TCGA-49-4487 
"CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" 
      TCGA-49-4488       TCGA-49-4490       TCGA-49-4494       TCGA-49-4501 
"CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" 
      TCGA-49-4505       TCGA-49-4506       TCGA-49-4507       TCGA-49-4510 
  "CDKN2A MUTATED" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" 
      TCGA-49-4512       TCGA-49-4514       TCGA-49-6742       TCGA-49-6743 
"CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" 
      TCGA-49-6744       TCGA-49-6745       TCGA-50-5044       TCGA-50-5045 
"CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" 
      TCGA-50-5049       TCGA-50-5051       TCGA-50-5055       TCGA-50-5066 
"CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" 
      TCGA-50-5068       TCGA-50-5072       TCGA-50-5930       TCGA-50-5931 
"CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" 
      TCGA-50-5932       TCGA-50-5933       TCGA-50-5935       TCGA-50-5936 
"CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" 
      TCGA-50-5939       TCGA-50-5941       TCGA-50-5942       TCGA-50-5944 
"CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" 
      TCGA-50-5946       TCGA-50-6590       TCGA-50-6591       TCGA-50-6592 
"CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" 
      TCGA-50-6593       TCGA-50-6594       TCGA-50-6595       TCGA-50-6597 
"CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE"   "CDKN2A MUTATED" "CDKN2A WILD-TYPE" 
      TCGA-55-1592       TCGA-55-1594       TCGA-55-1595       TCGA-55-1596 
"CDKN2A WILD-TYPE"   "CDKN2A MUTATED" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" 
      TCGA-55-5899       TCGA-55-6543       TCGA-55-6642       TCGA-55-6712 
"CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" 
      TCGA-64-1676       TCGA-64-1677       TCGA-64-1678       TCGA-64-1680 
"CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" 
      TCGA-64-5774       TCGA-64-5775       TCGA-64-5778       TCGA-64-5779 
"CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" 
      TCGA-64-5781       TCGA-64-5815       TCGA-67-3770       TCGA-67-3771 
"CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE"   "CDKN2A MUTATED" 
      TCGA-67-3772       TCGA-67-3773       TCGA-67-3774       TCGA-67-6215 
"CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" 
      TCGA-67-6216       TCGA-67-6217       TCGA-71-6725       TCGA-73-4658 
"CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" 
      TCGA-73-4659       TCGA-73-4662       TCGA-73-4666       TCGA-73-4668 
"CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" 
      TCGA-73-4670       TCGA-73-4675       TCGA-73-4676       TCGA-73-4677 
"CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" 
      TCGA-91-6828       TCGA-91-6829       TCGA-91-6831       TCGA-91-6835 
"CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" 
      TCGA-91-6836 
"CDKN2A WILD-TYPE" 
      TCGA-05-4249       TCGA-05-4250       TCGA-05-4382       TCGA-05-4384 
"CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" 
      TCGA-05-4390       TCGA-05-4396       TCGA-05-4397       TCGA-05-4398 
"CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" 
      TCGA-05-4402       TCGA-05-4405       TCGA-05-4415       TCGA-05-4417 
"CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" 
      TCGA-05-4418       TCGA-05-4420       TCGA-05-4424       TCGA-05-4426 
"CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE"   "CDKN2A MUTATED" 
      TCGA-05-4427       TCGA-05-4430       TCGA-05-4432       TCGA-05-4433 
"CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE"   "CDKN2A MUTATED" 
      TCGA-05-4434       TCGA-05-5420       TCGA-05-5423       TCGA-05-5425 
"CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" 
      TCGA-05-5429       TCGA-05-5715       TCGA-35-3615       TCGA-35-4122 
"CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" 
      TCGA-35-4123       TCGA-35-5375       TCGA-38-4625       TCGA-38-4626 
"CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE"   "CDKN2A MUTATED" "CDKN2A WILD-TYPE" 
      TCGA-38-4627       TCGA-38-4628       TCGA-38-4629       TCGA-38-4630 
"CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" 
      TCGA-38-4631       TCGA-38-4632       TCGA-38-6178       TCGA-44-2655 
"CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" 
      TCGA-44-2656       TCGA-44-2657       TCGA-44-2659       TCGA-44-2661 
"CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" 
      TCGA-44-2662       TCGA-44-2665       TCGA-44-2666       TCGA-44-2668 
"CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" 
      TCGA-44-3396       TCGA-44-3398       TCGA-44-3918       TCGA-44-3919 
"CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" 
      TCGA-44-4112       TCGA-44-5643       TCGA-44-5645       TCGA-44-6144 
"CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE"   "CDKN2A MUTATED" "CDKN2A WILD-TYPE" 
      TCGA-44-6145       TCGA-44-6146       TCGA-44-6147       TCGA-44-6148 
"CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" 
      TCGA-44-6774       TCGA-44-6775       TCGA-44-6776       TCGA-44-6777 
"CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" 
      TCGA-44-6778       TCGA-44-6779       TCGA-49-4486       TCGA-49-4487 
"CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" 
      TCGA-49-4488       TCGA-49-4490       TCGA-49-4494       TCGA-49-4501 
"CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" 
      TCGA-49-4505       TCGA-49-4506       TCGA-49-4507       TCGA-49-4510 
  "CDKN2A MUTATED" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" 
      TCGA-49-4512       TCGA-49-4514       TCGA-49-6742       TCGA-49-6743 
"CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" 
      TCGA-49-6744       TCGA-49-6745       TCGA-50-5044       TCGA-50-5045 
"CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" 
      TCGA-50-5049       TCGA-50-5051       TCGA-50-5055       TCGA-50-5066 
"CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" 
      TCGA-50-5068       TCGA-50-5072       TCGA-50-5930       TCGA-50-5931 
"CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" 
      TCGA-50-5932       TCGA-50-5933       TCGA-50-5935       TCGA-50-5936 
"CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" 
      TCGA-50-5939       TCGA-50-5941       TCGA-50-5942       TCGA-50-5944 
"CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" 
      TCGA-50-5946       TCGA-50-6590       TCGA-50-6591       TCGA-50-6592 
"CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" 
      TCGA-50-6593       TCGA-50-6594       TCGA-50-6595       TCGA-50-6597 
"CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE"   "CDKN2A MUTATED" "CDKN2A WILD-TYPE" 
      TCGA-55-1592       TCGA-55-1594       TCGA-55-1595       TCGA-55-1596 
"CDKN2A WILD-TYPE"   "CDKN2A MUTATED" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" 
      TCGA-55-5899       TCGA-55-6543       TCGA-55-6642       TCGA-55-6712 
"CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" 
      TCGA-64-1676       TCGA-64-1677       TCGA-64-1678       TCGA-64-1680 
"CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" 
      TCGA-64-5774       TCGA-64-5775       TCGA-64-5778       TCGA-64-5779 
"CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" 
      TCGA-64-5781       TCGA-64-5815       TCGA-67-3770       TCGA-67-3771 
"CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE"   "CDKN2A MUTATED" 
      TCGA-67-3772       TCGA-67-3773       TCGA-67-3774       TCGA-67-6215 
"CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" 
      TCGA-67-6216       TCGA-67-6217       TCGA-71-6725       TCGA-73-4658 
"CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" 
      TCGA-73-4659       TCGA-73-4662       TCGA-73-4666       TCGA-73-4668 
"CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" 
      TCGA-73-4670       TCGA-73-4675       TCGA-73-4676       TCGA-73-4677 
"CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" 
      TCGA-91-6828       TCGA-91-6829       TCGA-91-6831       TCGA-91-6835 
"CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" 
      TCGA-91-6836 
"CDKN2A WILD-TYPE" 
      TCGA-05-4249       TCGA-05-4250       TCGA-05-4382       TCGA-05-4384 
"CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" 
      TCGA-05-4390       TCGA-05-4396       TCGA-05-4397       TCGA-05-4398 
"CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" 
      TCGA-05-4402       TCGA-05-4405       TCGA-05-4415       TCGA-05-4417 
"CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" 
      TCGA-05-4418       TCGA-05-4420       TCGA-05-4424       TCGA-05-4426 
"CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE"   "CDKN2A MUTATED" 
      TCGA-05-4427       TCGA-05-4430       TCGA-05-4432       TCGA-05-4433 
"CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE"   "CDKN2A MUTATED" 
      TCGA-05-4434       TCGA-05-5420       TCGA-05-5423       TCGA-05-5425 
"CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" 
      TCGA-05-5429       TCGA-05-5715       TCGA-35-3615       TCGA-35-4122 
"CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" 
      TCGA-35-4123       TCGA-35-5375       TCGA-38-4625       TCGA-38-4626 
"CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE"   "CDKN2A MUTATED" "CDKN2A WILD-TYPE" 
      TCGA-38-4627       TCGA-38-4628       TCGA-38-4629       TCGA-38-4630 
"CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" 
      TCGA-38-4631       TCGA-38-4632       TCGA-38-6178       TCGA-44-2655 
"CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" 
      TCGA-44-2656       TCGA-44-2657       TCGA-44-2659       TCGA-44-2661 
"CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" 
      TCGA-44-2662       TCGA-44-2665       TCGA-44-2666       TCGA-44-2668 
"CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" 
      TCGA-44-3396       TCGA-44-3398       TCGA-44-3918       TCGA-44-3919 
"CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" 
      TCGA-44-4112       TCGA-44-5643       TCGA-44-5645       TCGA-44-6144 
"CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE"   "CDKN2A MUTATED" "CDKN2A WILD-TYPE" 
      TCGA-44-6145       TCGA-44-6146       TCGA-44-6147       TCGA-44-6148 
"CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" 
      TCGA-44-6774       TCGA-44-6775       TCGA-44-6776       TCGA-44-6777 
"CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" 
      TCGA-44-6778       TCGA-44-6779       TCGA-49-4486       TCGA-49-4487 
"CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" 
      TCGA-49-4488       TCGA-49-4490       TCGA-49-4494       TCGA-49-4501 
"CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" 
      TCGA-49-4505       TCGA-49-4506       TCGA-49-4507       TCGA-49-4510 
  "CDKN2A MUTATED" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" 
      TCGA-49-4512       TCGA-49-4514       TCGA-49-6742       TCGA-49-6743 
"CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" 
      TCGA-49-6744       TCGA-49-6745       TCGA-50-5044       TCGA-50-5045 
"CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" 
      TCGA-50-5049       TCGA-50-5051       TCGA-50-5055       TCGA-50-5066 
"CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" 
      TCGA-50-5068       TCGA-50-5072       TCGA-50-5930       TCGA-50-5931 
"CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" 
      TCGA-50-5932       TCGA-50-5933       TCGA-50-5935       TCGA-50-5936 
"CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" 
      TCGA-50-5939       TCGA-50-5941       TCGA-50-5942       TCGA-50-5944 
"CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" 
      TCGA-50-5946       TCGA-50-6590       TCGA-50-6591       TCGA-50-6592 
"CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" 
      TCGA-50-6593       TCGA-50-6594       TCGA-50-6595       TCGA-50-6597 
"CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE"   "CDKN2A MUTATED" "CDKN2A WILD-TYPE" 
      TCGA-55-1592       TCGA-55-1594       TCGA-55-1595       TCGA-55-1596 
"CDKN2A WILD-TYPE"   "CDKN2A MUTATED" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" 
      TCGA-55-5899       TCGA-55-6543       TCGA-55-6642       TCGA-55-6712 
"CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" 
      TCGA-64-1676       TCGA-64-1677       TCGA-64-1678       TCGA-64-1680 
"CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" 
      TCGA-64-5774       TCGA-64-5775       TCGA-64-5778       TCGA-64-5779 
"CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" 
      TCGA-64-5781       TCGA-64-5815       TCGA-67-3770       TCGA-67-3771 
"CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE"   "CDKN2A MUTATED" 
      TCGA-67-3772       TCGA-67-3773       TCGA-67-3774       TCGA-67-6215 
"CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" 
      TCGA-67-6216       TCGA-67-6217       TCGA-71-6725       TCGA-73-4658 
"CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" 
      TCGA-73-4659       TCGA-73-4662       TCGA-73-4666       TCGA-73-4668 
"CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" 
      TCGA-73-4670       TCGA-73-4675       TCGA-73-4676       TCGA-73-4677 
"CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" 
      TCGA-91-6828       TCGA-91-6829       TCGA-91-6831       TCGA-91-6835 
"CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" 
      TCGA-91-6836 
"CDKN2A WILD-TYPE" 
[1] "hr=" "1.3"
D14V2, continuous
D14V3, binary
[1] "tbl2"
                  cls
clus               [,1] [,2]
  CDKN2A MUTATED      5    3
  CDKN2A WILD-TYPE   88   76
        clus
vv       CDKN2A MUTATED CDKN2A WILD-TYPE
  FEMALE              5               88
  MALE                3               76
D14V4, continuous
D14V5, multiclass
D14V6, multiclass
    clus
vv   CDKN2A MUTATED CDKN2A WILD-TYPE
  T1              1               40
  T2              6              102
  T3              0               14
  T4              0                8
D14V7, multiclass
       clus
vv      CDKN2A MUTATED CDKN2A WILD-TYPE
  N0                 4               91
  N1                 1               36
  N2+N3              2               33
D14V8, multiclass
    clus
vv   CDKN2A MUTATED CDKN2A WILD-TYPE
  M0              7              130
  M1              0                9
  MX              0               22
D14V9, multiclass
     clus
vv    CDKN2A MUTATED CDKN2A WILD-TYPE
  I                5               83
  II               1               32
  III              2               37
  IV               0                9
D14V10, binary
[1] "tbl2"
                  cls
clus               [,1] [,2]
  CDKN2A MUTATED      0    8
  CDKN2A WILD-TYPE   16  148
     clus
vv    CDKN2A MUTATED CDKN2A WILD-TYPE
  NO               0               16
  YES              8              148
D14V11, continuous
D14V12, continuous
D14V13, multiclass
                                             clus
vv                                            CDKN2A MUTATED CDKN2A WILD-TYPE
  CURRENT REFORMED SMOKER FOR < OR = 15 YEARS              2               60
  CURRENT REFORMED SMOKER FOR > 15 YEARS                   4               42
  CURRENT SMOKER                                           2               26
  LIFELONG NON-SMOKER                                      0               24
D14V14, continuous

Clustering(15) Variable = EPHA6 MUTATION ANALYSIS
D15V1, survival
                 sevent
clus2              0  1
  EPHA6 MUTATED   15  6
  EPHA6 WILD-TYPE 84 44
  EPHA6 MUTATED EPHA6 WILD-TYPE 
             21             128 
  EPHA6 MUTATED EPHA6 WILD-TYPE 
              6              44 
$`EPHA6 MUTATED`
TCGA-05-4382 TCGA-05-4396 TCGA-05-4418 TCGA-05-4420 TCGA-05-4424 TCGA-05-4427 
       19.92         9.96         8.98        29.95        30.02        26.01 
TCGA-38-4628 TCGA-44-2656 TCGA-44-2668 TCGA-44-6778 TCGA-49-4494 TCGA-50-5066 
       49.02        19.10         8.09        36.49        35.54         9.76 
TCGA-50-5942 TCGA-55-1595 TCGA-64-5778 TCGA-64-5779 TCGA-67-3771 TCGA-67-3773 
        4.44        48.62        30.44        16.67         1.97         2.04 
TCGA-73-4659 TCGA-73-4662 TCGA-73-4677 
       23.38        29.95         1.25 

$`EPHA6 WILD-TYPE`
TCGA-05-4249 TCGA-05-4250 TCGA-05-4384 TCGA-05-4390 TCGA-05-4397 TCGA-05-4398 
       38.07         3.98        14.01        37.02        24.03        47.05 
TCGA-05-4402 TCGA-05-4405 TCGA-05-4415 TCGA-05-4417 TCGA-05-4426 TCGA-05-4430 
        8.02        20.05         2.96        14.93        26.01        25.02 
TCGA-05-4432 TCGA-05-4433 TCGA-05-4434 TCGA-05-5420 TCGA-05-5423 TCGA-05-5425 
       25.02        24.00        15.02         1.02         4.96         2.96 
TCGA-05-5429 TCGA-05-5715 TCGA-35-3615 TCGA-35-4122 TCGA-35-4123 TCGA-35-5375 
        0.99         2.04         0.46         7.36         5.95         8.68 
TCGA-38-4625 TCGA-38-4626 TCGA-38-4627 TCGA-38-4629 TCGA-38-4630 TCGA-38-4631 
       47.61        85.32        37.71        28.37        35.28        11.64 
TCGA-38-4632 TCGA-38-6178 TCGA-44-2655 TCGA-44-2657 TCGA-44-2659 TCGA-44-2661 
       44.61         5.19        18.87        13.15        17.39         3.39 
TCGA-44-2662 TCGA-44-2665 TCGA-44-2666 TCGA-44-3396 TCGA-44-3398 TCGA-44-3918 
       15.78        13.15         3.19        10.22         8.32         6.44 
TCGA-44-3919 TCGA-44-4112 TCGA-44-5643 TCGA-44-5645 TCGA-44-6144 TCGA-44-6145 
        6.21         4.60         3.48         6.84         0.30         3.35 
TCGA-44-6146 TCGA-44-6147 TCGA-44-6148 TCGA-44-6774 TCGA-44-6775 TCGA-44-6776 
        9.93         7.76         3.12         5.42         2.70        63.72 
TCGA-44-6777 TCGA-44-6779 TCGA-49-4486 TCGA-49-4487 TCGA-49-4488 TCGA-49-4490 
       32.45        16.41        76.21        28.11        28.57        12.66 
TCGA-49-4501 TCGA-49-4505 TCGA-49-4506 TCGA-49-4507 TCGA-49-4510 TCGA-49-4512 
       46.72        14.07        32.84         8.81        29.46        29.75 
TCGA-49-4514 TCGA-49-6742 TCGA-49-6743 TCGA-49-6744 TCGA-49-6745 TCGA-50-5044 
       43.20        15.02        12.13        12.99         4.93        20.48 
TCGA-50-5045 TCGA-50-5049 TCGA-50-5051 TCGA-50-5055 TCGA-50-5068 TCGA-50-5072 
       71.47        48.82        14.96        25.81        49.28         8.05 
TCGA-50-5930 TCGA-50-5931 TCGA-50-5932 TCGA-50-5933 TCGA-50-5935 TCGA-50-5936 
        9.27         8.78        35.87        77.88        21.47         8.45 
TCGA-50-5939 TCGA-50-5941 TCGA-50-5944 TCGA-50-5946 TCGA-50-6590 TCGA-50-6591 
       15.12         9.37        12.26        11.47        42.31         3.88 
TCGA-50-6592 TCGA-50-6593 TCGA-50-6594 TCGA-50-6595 TCGA-50-6597 TCGA-55-1592 
       25.51        11.05        12.16         6.21        33.37        23.05 
TCGA-55-1594 TCGA-55-1596 TCGA-55-5899 TCGA-55-6543 TCGA-55-6642 TCGA-55-6712 
       38.73        45.17         2.86         0.07        32.61         0.79 
TCGA-64-1676 TCGA-64-1677 TCGA-64-1678 TCGA-64-1680 TCGA-64-5774 TCGA-64-5775 
       56.81        20.65        39.09        37.02        83.84         0.10 
TCGA-64-5781 TCGA-64-5815 TCGA-67-3770 TCGA-67-3772 TCGA-67-3774 TCGA-67-6215 
       39.52         7.33         0.99         0.59         0.59         0.89 
TCGA-67-6216 TCGA-67-6217 TCGA-71-6725 TCGA-73-4658 TCGA-73-4666 TCGA-73-4668 
        0.69        13.87         2.01        52.57        20.28        15.35 
TCGA-73-4670 TCGA-73-4675 TCGA-73-4676 TCGA-91-6828 TCGA-91-6829 TCGA-91-6831 
        0.46         1.32         4.01         1.22        41.33         1.28 
TCGA-91-6835 TCGA-91-6836 
        1.15         0.36 

  EPHA6 MUTATED EPHA6 WILD-TYPE 
           1.25            0.07 
  EPHA6 MUTATED EPHA6 WILD-TYPE 
          49.02           85.32 
  EPHA6 MUTATED EPHA6 WILD-TYPE 
          19.92           13.07 
[1] "1.2 - 49.0 (19.9)" "0.1 - 85.3 (13.1)"
     TCGA-05-4249      TCGA-05-4250      TCGA-05-4382      TCGA-05-4384 
"EPHA6 WILD-TYPE" "EPHA6 WILD-TYPE"   "EPHA6 MUTATED" "EPHA6 WILD-TYPE" 
     TCGA-05-4390      TCGA-05-4396      TCGA-05-4397      TCGA-05-4398 
"EPHA6 WILD-TYPE"   "EPHA6 MUTATED" "EPHA6 WILD-TYPE" "EPHA6 WILD-TYPE" 
     TCGA-05-4402      TCGA-05-4405      TCGA-05-4415      TCGA-05-4417 
"EPHA6 WILD-TYPE" "EPHA6 WILD-TYPE" "EPHA6 WILD-TYPE" "EPHA6 WILD-TYPE" 
     TCGA-05-4418      TCGA-05-4420      TCGA-05-4424      TCGA-05-4426 
  "EPHA6 MUTATED"   "EPHA6 MUTATED"   "EPHA6 MUTATED" "EPHA6 WILD-TYPE" 
     TCGA-05-4427      TCGA-05-4430      TCGA-05-4432      TCGA-05-4433 
  "EPHA6 MUTATED" "EPHA6 WILD-TYPE" "EPHA6 WILD-TYPE" "EPHA6 WILD-TYPE" 
     TCGA-05-4434      TCGA-05-5420      TCGA-05-5423      TCGA-05-5425 
"EPHA6 WILD-TYPE" "EPHA6 WILD-TYPE" "EPHA6 WILD-TYPE" "EPHA6 WILD-TYPE" 
     TCGA-05-5429      TCGA-05-5715      TCGA-35-3615      TCGA-35-4122 
"EPHA6 WILD-TYPE" "EPHA6 WILD-TYPE" "EPHA6 WILD-TYPE" "EPHA6 WILD-TYPE" 
     TCGA-35-4123      TCGA-35-5375      TCGA-38-4625      TCGA-38-4626 
"EPHA6 WILD-TYPE" "EPHA6 WILD-TYPE" "EPHA6 WILD-TYPE" "EPHA6 WILD-TYPE" 
     TCGA-38-4627      TCGA-38-4628      TCGA-38-4629      TCGA-38-4630 
"EPHA6 WILD-TYPE"   "EPHA6 MUTATED" "EPHA6 WILD-TYPE" "EPHA6 WILD-TYPE" 
     TCGA-38-4631      TCGA-38-4632      TCGA-38-6178      TCGA-44-2655 
"EPHA6 WILD-TYPE" "EPHA6 WILD-TYPE" "EPHA6 WILD-TYPE" "EPHA6 WILD-TYPE" 
     TCGA-44-2656      TCGA-44-2657      TCGA-44-2659      TCGA-44-2661 
  "EPHA6 MUTATED" "EPHA6 WILD-TYPE" "EPHA6 WILD-TYPE" "EPHA6 WILD-TYPE" 
     TCGA-44-2662      TCGA-44-2665      TCGA-44-2666      TCGA-44-2668 
"EPHA6 WILD-TYPE" "EPHA6 WILD-TYPE" "EPHA6 WILD-TYPE"   "EPHA6 MUTATED" 
     TCGA-44-3396      TCGA-44-3398      TCGA-44-3918      TCGA-44-3919 
"EPHA6 WILD-TYPE" "EPHA6 WILD-TYPE" "EPHA6 WILD-TYPE" "EPHA6 WILD-TYPE" 
     TCGA-44-4112      TCGA-44-5643      TCGA-44-5645      TCGA-44-6144 
"EPHA6 WILD-TYPE" "EPHA6 WILD-TYPE" "EPHA6 WILD-TYPE" "EPHA6 WILD-TYPE" 
     TCGA-44-6145      TCGA-44-6146      TCGA-44-6147      TCGA-44-6148 
"EPHA6 WILD-TYPE" "EPHA6 WILD-TYPE" "EPHA6 WILD-TYPE" "EPHA6 WILD-TYPE" 
     TCGA-44-6774      TCGA-44-6775      TCGA-44-6776      TCGA-44-6777 
"EPHA6 WILD-TYPE" "EPHA6 WILD-TYPE" "EPHA6 WILD-TYPE" "EPHA6 WILD-TYPE" 
     TCGA-44-6778      TCGA-44-6779      TCGA-49-4486      TCGA-49-4487 
  "EPHA6 MUTATED" "EPHA6 WILD-TYPE" "EPHA6 WILD-TYPE" "EPHA6 WILD-TYPE" 
     TCGA-49-4488      TCGA-49-4490      TCGA-49-4494      TCGA-49-4501 
"EPHA6 WILD-TYPE" "EPHA6 WILD-TYPE"   "EPHA6 MUTATED" "EPHA6 WILD-TYPE" 
     TCGA-49-4505      TCGA-49-4506      TCGA-49-4507      TCGA-49-4510 
"EPHA6 WILD-TYPE" "EPHA6 WILD-TYPE" "EPHA6 WILD-TYPE" "EPHA6 WILD-TYPE" 
     TCGA-49-4512      TCGA-49-4514      TCGA-49-6742      TCGA-49-6743 
"EPHA6 WILD-TYPE" "EPHA6 WILD-TYPE" "EPHA6 WILD-TYPE" "EPHA6 WILD-TYPE" 
     TCGA-49-6744      TCGA-49-6745      TCGA-50-5044      TCGA-50-5045 
"EPHA6 WILD-TYPE" "EPHA6 WILD-TYPE" "EPHA6 WILD-TYPE" "EPHA6 WILD-TYPE" 
     TCGA-50-5049      TCGA-50-5051      TCGA-50-5055      TCGA-50-5066 
"EPHA6 WILD-TYPE" "EPHA6 WILD-TYPE" "EPHA6 WILD-TYPE"   "EPHA6 MUTATED" 
     TCGA-50-5068      TCGA-50-5072      TCGA-50-5930      TCGA-50-5931 
"EPHA6 WILD-TYPE" "EPHA6 WILD-TYPE" "EPHA6 WILD-TYPE" "EPHA6 WILD-TYPE" 
     TCGA-50-5932      TCGA-50-5933      TCGA-50-5935      TCGA-50-5936 
"EPHA6 WILD-TYPE" "EPHA6 WILD-TYPE" "EPHA6 WILD-TYPE" "EPHA6 WILD-TYPE" 
     TCGA-50-5939      TCGA-50-5941      TCGA-50-5942      TCGA-50-5944 
"EPHA6 WILD-TYPE" "EPHA6 WILD-TYPE"   "EPHA6 MUTATED" "EPHA6 WILD-TYPE" 
     TCGA-50-5946      TCGA-50-6590      TCGA-50-6591      TCGA-50-6592 
"EPHA6 WILD-TYPE" "EPHA6 WILD-TYPE" "EPHA6 WILD-TYPE" "EPHA6 WILD-TYPE" 
     TCGA-50-6593      TCGA-50-6594      TCGA-50-6595      TCGA-50-6597 
"EPHA6 WILD-TYPE" "EPHA6 WILD-TYPE" "EPHA6 WILD-TYPE" "EPHA6 WILD-TYPE" 
     TCGA-55-1592      TCGA-55-1594      TCGA-55-1595      TCGA-55-1596 
"EPHA6 WILD-TYPE" "EPHA6 WILD-TYPE"   "EPHA6 MUTATED" "EPHA6 WILD-TYPE" 
     TCGA-55-5899      TCGA-55-6543      TCGA-55-6642      TCGA-55-6712 
"EPHA6 WILD-TYPE" "EPHA6 WILD-TYPE" "EPHA6 WILD-TYPE" "EPHA6 WILD-TYPE" 
     TCGA-64-1676      TCGA-64-1677      TCGA-64-1678      TCGA-64-1680 
"EPHA6 WILD-TYPE" "EPHA6 WILD-TYPE" "EPHA6 WILD-TYPE" "EPHA6 WILD-TYPE" 
     TCGA-64-5774      TCGA-64-5775      TCGA-64-5778      TCGA-64-5779 
"EPHA6 WILD-TYPE" "EPHA6 WILD-TYPE"   "EPHA6 MUTATED"   "EPHA6 MUTATED" 
     TCGA-64-5781      TCGA-64-5815      TCGA-67-3770      TCGA-67-3771 
"EPHA6 WILD-TYPE" "EPHA6 WILD-TYPE" "EPHA6 WILD-TYPE"   "EPHA6 MUTATED" 
     TCGA-67-3772      TCGA-67-3773      TCGA-67-3774      TCGA-67-6215 
"EPHA6 WILD-TYPE"   "EPHA6 MUTATED" "EPHA6 WILD-TYPE" "EPHA6 WILD-TYPE" 
     TCGA-67-6216      TCGA-67-6217      TCGA-71-6725      TCGA-73-4658 
"EPHA6 WILD-TYPE" "EPHA6 WILD-TYPE" "EPHA6 WILD-TYPE" "EPHA6 WILD-TYPE" 
     TCGA-73-4659      TCGA-73-4662      TCGA-73-4666      TCGA-73-4668 
  "EPHA6 MUTATED"   "EPHA6 MUTATED" "EPHA6 WILD-TYPE" "EPHA6 WILD-TYPE" 
     TCGA-73-4670      TCGA-73-4675      TCGA-73-4676      TCGA-73-4677 
"EPHA6 WILD-TYPE" "EPHA6 WILD-TYPE" "EPHA6 WILD-TYPE"   "EPHA6 MUTATED" 
     TCGA-91-6828      TCGA-91-6829      TCGA-91-6831      TCGA-91-6835 
"EPHA6 WILD-TYPE" "EPHA6 WILD-TYPE" "EPHA6 WILD-TYPE" "EPHA6 WILD-TYPE" 
     TCGA-91-6836 
"EPHA6 WILD-TYPE" 
     TCGA-05-4249      TCGA-05-4250      TCGA-05-4382      TCGA-05-4384 
"EPHA6 WILD-TYPE" "EPHA6 WILD-TYPE"   "EPHA6 MUTATED" "EPHA6 WILD-TYPE" 
     TCGA-05-4390      TCGA-05-4396      TCGA-05-4397      TCGA-05-4398 
"EPHA6 WILD-TYPE"   "EPHA6 MUTATED" "EPHA6 WILD-TYPE" "EPHA6 WILD-TYPE" 
     TCGA-05-4402      TCGA-05-4405      TCGA-05-4415      TCGA-05-4417 
"EPHA6 WILD-TYPE" "EPHA6 WILD-TYPE" "EPHA6 WILD-TYPE" "EPHA6 WILD-TYPE" 
     TCGA-05-4418      TCGA-05-4420      TCGA-05-4424      TCGA-05-4426 
  "EPHA6 MUTATED"   "EPHA6 MUTATED"   "EPHA6 MUTATED" "EPHA6 WILD-TYPE" 
     TCGA-05-4427      TCGA-05-4430      TCGA-05-4432      TCGA-05-4433 
  "EPHA6 MUTATED" "EPHA6 WILD-TYPE" "EPHA6 WILD-TYPE" "EPHA6 WILD-TYPE" 
     TCGA-05-4434      TCGA-05-5420      TCGA-05-5423      TCGA-05-5425 
"EPHA6 WILD-TYPE" "EPHA6 WILD-TYPE" "EPHA6 WILD-TYPE" "EPHA6 WILD-TYPE" 
     TCGA-05-5429      TCGA-05-5715      TCGA-35-3615      TCGA-35-4122 
"EPHA6 WILD-TYPE" "EPHA6 WILD-TYPE" "EPHA6 WILD-TYPE" "EPHA6 WILD-TYPE" 
     TCGA-35-4123      TCGA-35-5375      TCGA-38-4625      TCGA-38-4626 
"EPHA6 WILD-TYPE" "EPHA6 WILD-TYPE" "EPHA6 WILD-TYPE" "EPHA6 WILD-TYPE" 
     TCGA-38-4627      TCGA-38-4628      TCGA-38-4629      TCGA-38-4630 
"EPHA6 WILD-TYPE"   "EPHA6 MUTATED" "EPHA6 WILD-TYPE" "EPHA6 WILD-TYPE" 
     TCGA-38-4631      TCGA-38-4632      TCGA-38-6178      TCGA-44-2655 
"EPHA6 WILD-TYPE" "EPHA6 WILD-TYPE" "EPHA6 WILD-TYPE" "EPHA6 WILD-TYPE" 
     TCGA-44-2656      TCGA-44-2657      TCGA-44-2659      TCGA-44-2661 
  "EPHA6 MUTATED" "EPHA6 WILD-TYPE" "EPHA6 WILD-TYPE" "EPHA6 WILD-TYPE" 
     TCGA-44-2662      TCGA-44-2665      TCGA-44-2666      TCGA-44-2668 
"EPHA6 WILD-TYPE" "EPHA6 WILD-TYPE" "EPHA6 WILD-TYPE"   "EPHA6 MUTATED" 
     TCGA-44-3396      TCGA-44-3398      TCGA-44-3918      TCGA-44-3919 
"EPHA6 WILD-TYPE" "EPHA6 WILD-TYPE" "EPHA6 WILD-TYPE" "EPHA6 WILD-TYPE" 
     TCGA-44-4112      TCGA-44-5643      TCGA-44-5645      TCGA-44-6144 
"EPHA6 WILD-TYPE" "EPHA6 WILD-TYPE" "EPHA6 WILD-TYPE" "EPHA6 WILD-TYPE" 
     TCGA-44-6145      TCGA-44-6146      TCGA-44-6147      TCGA-44-6148 
"EPHA6 WILD-TYPE" "EPHA6 WILD-TYPE" "EPHA6 WILD-TYPE" "EPHA6 WILD-TYPE" 
     TCGA-44-6774      TCGA-44-6775      TCGA-44-6776      TCGA-44-6777 
"EPHA6 WILD-TYPE" "EPHA6 WILD-TYPE" "EPHA6 WILD-TYPE" "EPHA6 WILD-TYPE" 
     TCGA-44-6778      TCGA-44-6779      TCGA-49-4486      TCGA-49-4487 
  "EPHA6 MUTATED" "EPHA6 WILD-TYPE" "EPHA6 WILD-TYPE" "EPHA6 WILD-TYPE" 
     TCGA-49-4488      TCGA-49-4490      TCGA-49-4494      TCGA-49-4501 
"EPHA6 WILD-TYPE" "EPHA6 WILD-TYPE"   "EPHA6 MUTATED" "EPHA6 WILD-TYPE" 
     TCGA-49-4505      TCGA-49-4506      TCGA-49-4507      TCGA-49-4510 
"EPHA6 WILD-TYPE" "EPHA6 WILD-TYPE" "EPHA6 WILD-TYPE" "EPHA6 WILD-TYPE" 
     TCGA-49-4512      TCGA-49-4514      TCGA-49-6742      TCGA-49-6743 
"EPHA6 WILD-TYPE" "EPHA6 WILD-TYPE" "EPHA6 WILD-TYPE" "EPHA6 WILD-TYPE" 
     TCGA-49-6744      TCGA-49-6745      TCGA-50-5044      TCGA-50-5045 
"EPHA6 WILD-TYPE" "EPHA6 WILD-TYPE" "EPHA6 WILD-TYPE" "EPHA6 WILD-TYPE" 
     TCGA-50-5049      TCGA-50-5051      TCGA-50-5055      TCGA-50-5066 
"EPHA6 WILD-TYPE" "EPHA6 WILD-TYPE" "EPHA6 WILD-TYPE"   "EPHA6 MUTATED" 
     TCGA-50-5068      TCGA-50-5072      TCGA-50-5930      TCGA-50-5931 
"EPHA6 WILD-TYPE" "EPHA6 WILD-TYPE" "EPHA6 WILD-TYPE" "EPHA6 WILD-TYPE" 
     TCGA-50-5932      TCGA-50-5933      TCGA-50-5935      TCGA-50-5936 
"EPHA6 WILD-TYPE" "EPHA6 WILD-TYPE" "EPHA6 WILD-TYPE" "EPHA6 WILD-TYPE" 
     TCGA-50-5939      TCGA-50-5941      TCGA-50-5942      TCGA-50-5944 
"EPHA6 WILD-TYPE" "EPHA6 WILD-TYPE"   "EPHA6 MUTATED" "EPHA6 WILD-TYPE" 
     TCGA-50-5946      TCGA-50-6590      TCGA-50-6591      TCGA-50-6592 
"EPHA6 WILD-TYPE" "EPHA6 WILD-TYPE" "EPHA6 WILD-TYPE" "EPHA6 WILD-TYPE" 
     TCGA-50-6593      TCGA-50-6594      TCGA-50-6595      TCGA-50-6597 
"EPHA6 WILD-TYPE" "EPHA6 WILD-TYPE" "EPHA6 WILD-TYPE" "EPHA6 WILD-TYPE" 
     TCGA-55-1592      TCGA-55-1594      TCGA-55-1595      TCGA-55-1596 
"EPHA6 WILD-TYPE" "EPHA6 WILD-TYPE"   "EPHA6 MUTATED" "EPHA6 WILD-TYPE" 
     TCGA-55-5899      TCGA-55-6543      TCGA-55-6642      TCGA-55-6712 
"EPHA6 WILD-TYPE" "EPHA6 WILD-TYPE" "EPHA6 WILD-TYPE" "EPHA6 WILD-TYPE" 
     TCGA-64-1676      TCGA-64-1677      TCGA-64-1678      TCGA-64-1680 
"EPHA6 WILD-TYPE" "EPHA6 WILD-TYPE" "EPHA6 WILD-TYPE" "EPHA6 WILD-TYPE" 
     TCGA-64-5774      TCGA-64-5775      TCGA-64-5778      TCGA-64-5779 
"EPHA6 WILD-TYPE" "EPHA6 WILD-TYPE"   "EPHA6 MUTATED"   "EPHA6 MUTATED" 
     TCGA-64-5781      TCGA-64-5815      TCGA-67-3770      TCGA-67-3771 
"EPHA6 WILD-TYPE" "EPHA6 WILD-TYPE" "EPHA6 WILD-TYPE"   "EPHA6 MUTATED" 
     TCGA-67-3772      TCGA-67-3773      TCGA-67-3774      TCGA-67-6215 
"EPHA6 WILD-TYPE"   "EPHA6 MUTATED" "EPHA6 WILD-TYPE" "EPHA6 WILD-TYPE" 
     TCGA-67-6216      TCGA-67-6217      TCGA-71-6725      TCGA-73-4658 
"EPHA6 WILD-TYPE" "EPHA6 WILD-TYPE" "EPHA6 WILD-TYPE" "EPHA6 WILD-TYPE" 
     TCGA-73-4659      TCGA-73-4662      TCGA-73-4666      TCGA-73-4668 
  "EPHA6 MUTATED"   "EPHA6 MUTATED" "EPHA6 WILD-TYPE" "EPHA6 WILD-TYPE" 
     TCGA-73-4670      TCGA-73-4675      TCGA-73-4676      TCGA-73-4677 
"EPHA6 WILD-TYPE" "EPHA6 WILD-TYPE" "EPHA6 WILD-TYPE"   "EPHA6 MUTATED" 
     TCGA-91-6828      TCGA-91-6829      TCGA-91-6831      TCGA-91-6835 
"EPHA6 WILD-TYPE" "EPHA6 WILD-TYPE" "EPHA6 WILD-TYPE" "EPHA6 WILD-TYPE" 
     TCGA-91-6836 
"EPHA6 WILD-TYPE" 
     TCGA-05-4249      TCGA-05-4250      TCGA-05-4382      TCGA-05-4384 
"EPHA6 WILD-TYPE" "EPHA6 WILD-TYPE"   "EPHA6 MUTATED" "EPHA6 WILD-TYPE" 
     TCGA-05-4390      TCGA-05-4396      TCGA-05-4397      TCGA-05-4398 
"EPHA6 WILD-TYPE"   "EPHA6 MUTATED" "EPHA6 WILD-TYPE" "EPHA6 WILD-TYPE" 
     TCGA-05-4402      TCGA-05-4405      TCGA-05-4415      TCGA-05-4417 
"EPHA6 WILD-TYPE" "EPHA6 WILD-TYPE" "EPHA6 WILD-TYPE" "EPHA6 WILD-TYPE" 
     TCGA-05-4418      TCGA-05-4420      TCGA-05-4424      TCGA-05-4426 
  "EPHA6 MUTATED"   "EPHA6 MUTATED"   "EPHA6 MUTATED" "EPHA6 WILD-TYPE" 
     TCGA-05-4427      TCGA-05-4430      TCGA-05-4432      TCGA-05-4433 
  "EPHA6 MUTATED" "EPHA6 WILD-TYPE" "EPHA6 WILD-TYPE" "EPHA6 WILD-TYPE" 
     TCGA-05-4434      TCGA-05-5420      TCGA-05-5423      TCGA-05-5425 
"EPHA6 WILD-TYPE" "EPHA6 WILD-TYPE" "EPHA6 WILD-TYPE" "EPHA6 WILD-TYPE" 
     TCGA-05-5429      TCGA-05-5715      TCGA-35-3615      TCGA-35-4122 
"EPHA6 WILD-TYPE" "EPHA6 WILD-TYPE" "EPHA6 WILD-TYPE" "EPHA6 WILD-TYPE" 
     TCGA-35-4123      TCGA-35-5375      TCGA-38-4625      TCGA-38-4626 
"EPHA6 WILD-TYPE" "EPHA6 WILD-TYPE" "EPHA6 WILD-TYPE" "EPHA6 WILD-TYPE" 
     TCGA-38-4627      TCGA-38-4628      TCGA-38-4629      TCGA-38-4630 
"EPHA6 WILD-TYPE"   "EPHA6 MUTATED" "EPHA6 WILD-TYPE" "EPHA6 WILD-TYPE" 
     TCGA-38-4631      TCGA-38-4632      TCGA-38-6178      TCGA-44-2655 
"EPHA6 WILD-TYPE" "EPHA6 WILD-TYPE" "EPHA6 WILD-TYPE" "EPHA6 WILD-TYPE" 
     TCGA-44-2656      TCGA-44-2657      TCGA-44-2659      TCGA-44-2661 
  "EPHA6 MUTATED" "EPHA6 WILD-TYPE" "EPHA6 WILD-TYPE" "EPHA6 WILD-TYPE" 
     TCGA-44-2662      TCGA-44-2665      TCGA-44-2666      TCGA-44-2668 
"EPHA6 WILD-TYPE" "EPHA6 WILD-TYPE" "EPHA6 WILD-TYPE"   "EPHA6 MUTATED" 
     TCGA-44-3396      TCGA-44-3398      TCGA-44-3918      TCGA-44-3919 
"EPHA6 WILD-TYPE" "EPHA6 WILD-TYPE" "EPHA6 WILD-TYPE" "EPHA6 WILD-TYPE" 
     TCGA-44-4112      TCGA-44-5643      TCGA-44-5645      TCGA-44-6144 
"EPHA6 WILD-TYPE" "EPHA6 WILD-TYPE" "EPHA6 WILD-TYPE" "EPHA6 WILD-TYPE" 
     TCGA-44-6145      TCGA-44-6146      TCGA-44-6147      TCGA-44-6148 
"EPHA6 WILD-TYPE" "EPHA6 WILD-TYPE" "EPHA6 WILD-TYPE" "EPHA6 WILD-TYPE" 
     TCGA-44-6774      TCGA-44-6775      TCGA-44-6776      TCGA-44-6777 
"EPHA6 WILD-TYPE" "EPHA6 WILD-TYPE" "EPHA6 WILD-TYPE" "EPHA6 WILD-TYPE" 
     TCGA-44-6778      TCGA-44-6779      TCGA-49-4486      TCGA-49-4487 
  "EPHA6 MUTATED" "EPHA6 WILD-TYPE" "EPHA6 WILD-TYPE" "EPHA6 WILD-TYPE" 
     TCGA-49-4488      TCGA-49-4490      TCGA-49-4494      TCGA-49-4501 
"EPHA6 WILD-TYPE" "EPHA6 WILD-TYPE"   "EPHA6 MUTATED" "EPHA6 WILD-TYPE" 
     TCGA-49-4505      TCGA-49-4506      TCGA-49-4507      TCGA-49-4510 
"EPHA6 WILD-TYPE" "EPHA6 WILD-TYPE" "EPHA6 WILD-TYPE" "EPHA6 WILD-TYPE" 
     TCGA-49-4512      TCGA-49-4514      TCGA-49-6742      TCGA-49-6743 
"EPHA6 WILD-TYPE" "EPHA6 WILD-TYPE" "EPHA6 WILD-TYPE" "EPHA6 WILD-TYPE" 
     TCGA-49-6744      TCGA-49-6745      TCGA-50-5044      TCGA-50-5045 
"EPHA6 WILD-TYPE" "EPHA6 WILD-TYPE" "EPHA6 WILD-TYPE" "EPHA6 WILD-TYPE" 
     TCGA-50-5049      TCGA-50-5051      TCGA-50-5055      TCGA-50-5066 
"EPHA6 WILD-TYPE" "EPHA6 WILD-TYPE" "EPHA6 WILD-TYPE"   "EPHA6 MUTATED" 
     TCGA-50-5068      TCGA-50-5072      TCGA-50-5930      TCGA-50-5931 
"EPHA6 WILD-TYPE" "EPHA6 WILD-TYPE" "EPHA6 WILD-TYPE" "EPHA6 WILD-TYPE" 
     TCGA-50-5932      TCGA-50-5933      TCGA-50-5935      TCGA-50-5936 
"EPHA6 WILD-TYPE" "EPHA6 WILD-TYPE" "EPHA6 WILD-TYPE" "EPHA6 WILD-TYPE" 
     TCGA-50-5939      TCGA-50-5941      TCGA-50-5942      TCGA-50-5944 
"EPHA6 WILD-TYPE" "EPHA6 WILD-TYPE"   "EPHA6 MUTATED" "EPHA6 WILD-TYPE" 
     TCGA-50-5946      TCGA-50-6590      TCGA-50-6591      TCGA-50-6592 
"EPHA6 WILD-TYPE" "EPHA6 WILD-TYPE" "EPHA6 WILD-TYPE" "EPHA6 WILD-TYPE" 
     TCGA-50-6593      TCGA-50-6594      TCGA-50-6595      TCGA-50-6597 
"EPHA6 WILD-TYPE" "EPHA6 WILD-TYPE" "EPHA6 WILD-TYPE" "EPHA6 WILD-TYPE" 
     TCGA-55-1592      TCGA-55-1594      TCGA-55-1595      TCGA-55-1596 
"EPHA6 WILD-TYPE" "EPHA6 WILD-TYPE"   "EPHA6 MUTATED" "EPHA6 WILD-TYPE" 
     TCGA-55-5899      TCGA-55-6543      TCGA-55-6642      TCGA-55-6712 
"EPHA6 WILD-TYPE" "EPHA6 WILD-TYPE" "EPHA6 WILD-TYPE" "EPHA6 WILD-TYPE" 
     TCGA-64-1676      TCGA-64-1677      TCGA-64-1678      TCGA-64-1680 
"EPHA6 WILD-TYPE" "EPHA6 WILD-TYPE" "EPHA6 WILD-TYPE" "EPHA6 WILD-TYPE" 
     TCGA-64-5774      TCGA-64-5775      TCGA-64-5778      TCGA-64-5779 
"EPHA6 WILD-TYPE" "EPHA6 WILD-TYPE"   "EPHA6 MUTATED"   "EPHA6 MUTATED" 
     TCGA-64-5781      TCGA-64-5815      TCGA-67-3770      TCGA-67-3771 
"EPHA6 WILD-TYPE" "EPHA6 WILD-TYPE" "EPHA6 WILD-TYPE"   "EPHA6 MUTATED" 
     TCGA-67-3772      TCGA-67-3773      TCGA-67-3774      TCGA-67-6215 
"EPHA6 WILD-TYPE"   "EPHA6 MUTATED" "EPHA6 WILD-TYPE" "EPHA6 WILD-TYPE" 
     TCGA-67-6216      TCGA-67-6217      TCGA-71-6725      TCGA-73-4658 
"EPHA6 WILD-TYPE" "EPHA6 WILD-TYPE" "EPHA6 WILD-TYPE" "EPHA6 WILD-TYPE" 
     TCGA-73-4659      TCGA-73-4662      TCGA-73-4666      TCGA-73-4668 
  "EPHA6 MUTATED"   "EPHA6 MUTATED" "EPHA6 WILD-TYPE" "EPHA6 WILD-TYPE" 
     TCGA-73-4670      TCGA-73-4675      TCGA-73-4676      TCGA-73-4677 
"EPHA6 WILD-TYPE" "EPHA6 WILD-TYPE" "EPHA6 WILD-TYPE"   "EPHA6 MUTATED" 
     TCGA-91-6828      TCGA-91-6829      TCGA-91-6831      TCGA-91-6835 
"EPHA6 WILD-TYPE" "EPHA6 WILD-TYPE" "EPHA6 WILD-TYPE" "EPHA6 WILD-TYPE" 
     TCGA-91-6836 
"EPHA6 WILD-TYPE" 
[1] "hr=" "1.2"
D15V2, continuous
D15V3, binary
[1] "tbl2"
                 cls
clus              [,1] [,2]
  EPHA6 MUTATED      8   14
  EPHA6 WILD-TYPE   85   65
        clus
vv       EPHA6 MUTATED EPHA6 WILD-TYPE
  FEMALE             8              85
  MALE              14              65
D15V4, continuous
D15V5, multiclass
D15V6, multiclass
    clus
vv   EPHA6 MUTATED EPHA6 WILD-TYPE
  T1             5              36
  T2            12              96
  T3             4              10
  T4             1               7
D15V7, multiclass
       clus
vv      EPHA6 MUTATED EPHA6 WILD-TYPE
  N0               14              81
  N1                3              34
  N2+N3             5              30
D15V8, multiclass
    clus
vv   EPHA6 MUTATED EPHA6 WILD-TYPE
  M0            21             116
  M1             0               9
  MX             1              21
D15V9, multiclass
     clus
vv    EPHA6 MUTATED EPHA6 WILD-TYPE
  I              12              76
  II              3              30
  III             6              33
  IV              0               9
D15V10, binary
[1] "tbl2"
                 cls
clus              [,1] [,2]
  EPHA6 MUTATED      2   20
  EPHA6 WILD-TYPE   14  136
     clus
vv    EPHA6 MUTATED EPHA6 WILD-TYPE
  NO              2              14
  YES            20             136
D15V11, continuous
D15V12, continuous
D15V13, multiclass
                                             clus
vv                                            EPHA6 MUTATED EPHA6 WILD-TYPE
  CURRENT REFORMED SMOKER FOR < OR = 15 YEARS            12              50
  CURRENT REFORMED SMOKER FOR > 15 YEARS                  6              40
  CURRENT SMOKER                                          2              26
  LIFELONG NON-SMOKER                                     2              22
D15V14, continuous

Clustering(16) Variable = CNBD1 MUTATION ANALYSIS
D16V1, survival
                 sevent
clus2              0  1
  CNBD1 MUTATED    6  3
  CNBD1 WILD-TYPE 93 47
  CNBD1 MUTATED CNBD1 WILD-TYPE 
              9             140 
  CNBD1 MUTATED CNBD1 WILD-TYPE 
              3              47 
$`CNBD1 MUTATED`
TCGA-05-4390 TCGA-05-4397 TCGA-05-4398 TCGA-05-4427 TCGA-49-6743 TCGA-50-5931 
       37.02        24.03        47.05        26.01        12.13         8.78 
TCGA-50-6594 TCGA-55-1595 TCGA-91-6831 
       12.16        48.62         1.28 

$`CNBD1 WILD-TYPE`
TCGA-05-4249 TCGA-05-4250 TCGA-05-4382 TCGA-05-4384 TCGA-05-4396 TCGA-05-4402 
       38.07         3.98        19.92        14.01         9.96         8.02 
TCGA-05-4405 TCGA-05-4415 TCGA-05-4417 TCGA-05-4418 TCGA-05-4420 TCGA-05-4424 
       20.05         2.96        14.93         8.98        29.95        30.02 
TCGA-05-4426 TCGA-05-4430 TCGA-05-4432 TCGA-05-4433 TCGA-05-4434 TCGA-05-5420 
       26.01        25.02        25.02        24.00        15.02         1.02 
TCGA-05-5423 TCGA-05-5425 TCGA-05-5429 TCGA-05-5715 TCGA-35-3615 TCGA-35-4122 
        4.96         2.96         0.99         2.04         0.46         7.36 
TCGA-35-4123 TCGA-35-5375 TCGA-38-4625 TCGA-38-4626 TCGA-38-4627 TCGA-38-4628 
        5.95         8.68        47.61        85.32        37.71        49.02 
TCGA-38-4629 TCGA-38-4630 TCGA-38-4631 TCGA-38-4632 TCGA-38-6178 TCGA-44-2655 
       28.37        35.28        11.64        44.61         5.19        18.87 
TCGA-44-2656 TCGA-44-2657 TCGA-44-2659 TCGA-44-2661 TCGA-44-2662 TCGA-44-2665 
       19.10        13.15        17.39         3.39        15.78        13.15 
TCGA-44-2666 TCGA-44-2668 TCGA-44-3396 TCGA-44-3398 TCGA-44-3918 TCGA-44-3919 
        3.19         8.09        10.22         8.32         6.44         6.21 
TCGA-44-4112 TCGA-44-5643 TCGA-44-5645 TCGA-44-6144 TCGA-44-6145 TCGA-44-6146 
        4.60         3.48         6.84         0.30         3.35         9.93 
TCGA-44-6147 TCGA-44-6148 TCGA-44-6774 TCGA-44-6775 TCGA-44-6776 TCGA-44-6777 
        7.76         3.12         5.42         2.70        63.72        32.45 
TCGA-44-6778 TCGA-44-6779 TCGA-49-4486 TCGA-49-4487 TCGA-49-4488 TCGA-49-4490 
       36.49        16.41        76.21        28.11        28.57        12.66 
TCGA-49-4494 TCGA-49-4501 TCGA-49-4505 TCGA-49-4506 TCGA-49-4507 TCGA-49-4510 
       35.54        46.72        14.07        32.84         8.81        29.46 
TCGA-49-4512 TCGA-49-4514 TCGA-49-6742 TCGA-49-6744 TCGA-49-6745 TCGA-50-5044 
       29.75        43.20        15.02        12.99         4.93        20.48 
TCGA-50-5045 TCGA-50-5049 TCGA-50-5051 TCGA-50-5055 TCGA-50-5066 TCGA-50-5068 
       71.47        48.82        14.96        25.81         9.76        49.28 
TCGA-50-5072 TCGA-50-5930 TCGA-50-5932 TCGA-50-5933 TCGA-50-5935 TCGA-50-5936 
        8.05         9.27        35.87        77.88        21.47         8.45 
TCGA-50-5939 TCGA-50-5941 TCGA-50-5942 TCGA-50-5944 TCGA-50-5946 TCGA-50-6590 
       15.12         9.37         4.44        12.26        11.47        42.31 
TCGA-50-6591 TCGA-50-6592 TCGA-50-6593 TCGA-50-6595 TCGA-50-6597 TCGA-55-1592 
        3.88        25.51        11.05         6.21        33.37        23.05 
TCGA-55-1594 TCGA-55-1596 TCGA-55-5899 TCGA-55-6543 TCGA-55-6642 TCGA-55-6712 
       38.73        45.17         2.86         0.07        32.61         0.79 
TCGA-64-1676 TCGA-64-1677 TCGA-64-1678 TCGA-64-1680 TCGA-64-5774 TCGA-64-5775 
       56.81        20.65        39.09        37.02        83.84         0.10 
TCGA-64-5778 TCGA-64-5779 TCGA-64-5781 TCGA-64-5815 TCGA-67-3770 TCGA-67-3771 
       30.44        16.67        39.52         7.33         0.99         1.97 
TCGA-67-3772 TCGA-67-3773 TCGA-67-3774 TCGA-67-6215 TCGA-67-6216 TCGA-67-6217 
        0.59         2.04         0.59         0.89         0.69        13.87 
TCGA-71-6725 TCGA-73-4658 TCGA-73-4659 TCGA-73-4662 TCGA-73-4666 TCGA-73-4668 
        2.01        52.57        23.38        29.95        20.28        15.35 
TCGA-73-4670 TCGA-73-4675 TCGA-73-4676 TCGA-73-4677 TCGA-91-6828 TCGA-91-6829 
        0.46         1.32         4.01         1.25         1.22        41.33 
TCGA-91-6835 TCGA-91-6836 
        1.15         0.36 

  CNBD1 MUTATED CNBD1 WILD-TYPE 
           1.28            0.07 
  CNBD1 MUTATED CNBD1 WILD-TYPE 
          48.62           85.32 
  CNBD1 MUTATED CNBD1 WILD-TYPE 
          24.03           13.51 
[1] "1.3 - 48.6 (24.0)" "0.1 - 85.3 (13.5)"
     TCGA-05-4249      TCGA-05-4250      TCGA-05-4382      TCGA-05-4384 
"CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" 
     TCGA-05-4390      TCGA-05-4396      TCGA-05-4397      TCGA-05-4398 
  "CNBD1 MUTATED" "CNBD1 WILD-TYPE"   "CNBD1 MUTATED"   "CNBD1 MUTATED" 
     TCGA-05-4402      TCGA-05-4405      TCGA-05-4415      TCGA-05-4417 
"CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" 
     TCGA-05-4418      TCGA-05-4420      TCGA-05-4424      TCGA-05-4426 
"CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" 
     TCGA-05-4427      TCGA-05-4430      TCGA-05-4432      TCGA-05-4433 
  "CNBD1 MUTATED" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" 
     TCGA-05-4434      TCGA-05-5420      TCGA-05-5423      TCGA-05-5425 
"CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" 
     TCGA-05-5429      TCGA-05-5715      TCGA-35-3615      TCGA-35-4122 
"CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" 
     TCGA-35-4123      TCGA-35-5375      TCGA-38-4625      TCGA-38-4626 
"CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" 
     TCGA-38-4627      TCGA-38-4628      TCGA-38-4629      TCGA-38-4630 
"CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" 
     TCGA-38-4631      TCGA-38-4632      TCGA-38-6178      TCGA-44-2655 
"CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" 
     TCGA-44-2656      TCGA-44-2657      TCGA-44-2659      TCGA-44-2661 
"CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" 
     TCGA-44-2662      TCGA-44-2665      TCGA-44-2666      TCGA-44-2668 
"CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" 
     TCGA-44-3396      TCGA-44-3398      TCGA-44-3918      TCGA-44-3919 
"CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" 
     TCGA-44-4112      TCGA-44-5643      TCGA-44-5645      TCGA-44-6144 
"CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" 
     TCGA-44-6145      TCGA-44-6146      TCGA-44-6147      TCGA-44-6148 
"CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" 
     TCGA-44-6774      TCGA-44-6775      TCGA-44-6776      TCGA-44-6777 
"CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" 
     TCGA-44-6778      TCGA-44-6779      TCGA-49-4486      TCGA-49-4487 
"CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" 
     TCGA-49-4488      TCGA-49-4490      TCGA-49-4494      TCGA-49-4501 
"CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" 
     TCGA-49-4505      TCGA-49-4506      TCGA-49-4507      TCGA-49-4510 
"CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" 
     TCGA-49-4512      TCGA-49-4514      TCGA-49-6742      TCGA-49-6743 
"CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE"   "CNBD1 MUTATED" 
     TCGA-49-6744      TCGA-49-6745      TCGA-50-5044      TCGA-50-5045 
"CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" 
     TCGA-50-5049      TCGA-50-5051      TCGA-50-5055      TCGA-50-5066 
"CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" 
     TCGA-50-5068      TCGA-50-5072      TCGA-50-5930      TCGA-50-5931 
"CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE"   "CNBD1 MUTATED" 
     TCGA-50-5932      TCGA-50-5933      TCGA-50-5935      TCGA-50-5936 
"CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" 
     TCGA-50-5939      TCGA-50-5941      TCGA-50-5942      TCGA-50-5944 
"CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" 
     TCGA-50-5946      TCGA-50-6590      TCGA-50-6591      TCGA-50-6592 
"CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" 
     TCGA-50-6593      TCGA-50-6594      TCGA-50-6595      TCGA-50-6597 
"CNBD1 WILD-TYPE"   "CNBD1 MUTATED" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" 
     TCGA-55-1592      TCGA-55-1594      TCGA-55-1595      TCGA-55-1596 
"CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE"   "CNBD1 MUTATED" "CNBD1 WILD-TYPE" 
     TCGA-55-5899      TCGA-55-6543      TCGA-55-6642      TCGA-55-6712 
"CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" 
     TCGA-64-1676      TCGA-64-1677      TCGA-64-1678      TCGA-64-1680 
"CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" 
     TCGA-64-5774      TCGA-64-5775      TCGA-64-5778      TCGA-64-5779 
"CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" 
     TCGA-64-5781      TCGA-64-5815      TCGA-67-3770      TCGA-67-3771 
"CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" 
     TCGA-67-3772      TCGA-67-3773      TCGA-67-3774      TCGA-67-6215 
"CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" 
     TCGA-67-6216      TCGA-67-6217      TCGA-71-6725      TCGA-73-4658 
"CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" 
     TCGA-73-4659      TCGA-73-4662      TCGA-73-4666      TCGA-73-4668 
"CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" 
     TCGA-73-4670      TCGA-73-4675      TCGA-73-4676      TCGA-73-4677 
"CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" 
     TCGA-91-6828      TCGA-91-6829      TCGA-91-6831      TCGA-91-6835 
"CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE"   "CNBD1 MUTATED" "CNBD1 WILD-TYPE" 
     TCGA-91-6836 
"CNBD1 WILD-TYPE" 
     TCGA-05-4249      TCGA-05-4250      TCGA-05-4382      TCGA-05-4384 
"CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" 
     TCGA-05-4390      TCGA-05-4396      TCGA-05-4397      TCGA-05-4398 
  "CNBD1 MUTATED" "CNBD1 WILD-TYPE"   "CNBD1 MUTATED"   "CNBD1 MUTATED" 
     TCGA-05-4402      TCGA-05-4405      TCGA-05-4415      TCGA-05-4417 
"CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" 
     TCGA-05-4418      TCGA-05-4420      TCGA-05-4424      TCGA-05-4426 
"CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" 
     TCGA-05-4427      TCGA-05-4430      TCGA-05-4432      TCGA-05-4433 
  "CNBD1 MUTATED" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" 
     TCGA-05-4434      TCGA-05-5420      TCGA-05-5423      TCGA-05-5425 
"CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" 
     TCGA-05-5429      TCGA-05-5715      TCGA-35-3615      TCGA-35-4122 
"CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" 
     TCGA-35-4123      TCGA-35-5375      TCGA-38-4625      TCGA-38-4626 
"CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" 
     TCGA-38-4627      TCGA-38-4628      TCGA-38-4629      TCGA-38-4630 
"CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" 
     TCGA-38-4631      TCGA-38-4632      TCGA-38-6178      TCGA-44-2655 
"CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" 
     TCGA-44-2656      TCGA-44-2657      TCGA-44-2659      TCGA-44-2661 
"CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" 
     TCGA-44-2662      TCGA-44-2665      TCGA-44-2666      TCGA-44-2668 
"CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" 
     TCGA-44-3396      TCGA-44-3398      TCGA-44-3918      TCGA-44-3919 
"CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" 
     TCGA-44-4112      TCGA-44-5643      TCGA-44-5645      TCGA-44-6144 
"CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" 
     TCGA-44-6145      TCGA-44-6146      TCGA-44-6147      TCGA-44-6148 
"CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" 
     TCGA-44-6774      TCGA-44-6775      TCGA-44-6776      TCGA-44-6777 
"CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" 
     TCGA-44-6778      TCGA-44-6779      TCGA-49-4486      TCGA-49-4487 
"CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" 
     TCGA-49-4488      TCGA-49-4490      TCGA-49-4494      TCGA-49-4501 
"CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" 
     TCGA-49-4505      TCGA-49-4506      TCGA-49-4507      TCGA-49-4510 
"CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" 
     TCGA-49-4512      TCGA-49-4514      TCGA-49-6742      TCGA-49-6743 
"CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE"   "CNBD1 MUTATED" 
     TCGA-49-6744      TCGA-49-6745      TCGA-50-5044      TCGA-50-5045 
"CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" 
     TCGA-50-5049      TCGA-50-5051      TCGA-50-5055      TCGA-50-5066 
"CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" 
     TCGA-50-5068      TCGA-50-5072      TCGA-50-5930      TCGA-50-5931 
"CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE"   "CNBD1 MUTATED" 
     TCGA-50-5932      TCGA-50-5933      TCGA-50-5935      TCGA-50-5936 
"CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" 
     TCGA-50-5939      TCGA-50-5941      TCGA-50-5942      TCGA-50-5944 
"CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" 
     TCGA-50-5946      TCGA-50-6590      TCGA-50-6591      TCGA-50-6592 
"CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" 
     TCGA-50-6593      TCGA-50-6594      TCGA-50-6595      TCGA-50-6597 
"CNBD1 WILD-TYPE"   "CNBD1 MUTATED" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" 
     TCGA-55-1592      TCGA-55-1594      TCGA-55-1595      TCGA-55-1596 
"CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE"   "CNBD1 MUTATED" "CNBD1 WILD-TYPE" 
     TCGA-55-5899      TCGA-55-6543      TCGA-55-6642      TCGA-55-6712 
"CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" 
     TCGA-64-1676      TCGA-64-1677      TCGA-64-1678      TCGA-64-1680 
"CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" 
     TCGA-64-5774      TCGA-64-5775      TCGA-64-5778      TCGA-64-5779 
"CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" 
     TCGA-64-5781      TCGA-64-5815      TCGA-67-3770      TCGA-67-3771 
"CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" 
     TCGA-67-3772      TCGA-67-3773      TCGA-67-3774      TCGA-67-6215 
"CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" 
     TCGA-67-6216      TCGA-67-6217      TCGA-71-6725      TCGA-73-4658 
"CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" 
     TCGA-73-4659      TCGA-73-4662      TCGA-73-4666      TCGA-73-4668 
"CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" 
     TCGA-73-4670      TCGA-73-4675      TCGA-73-4676      TCGA-73-4677 
"CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" 
     TCGA-91-6828      TCGA-91-6829      TCGA-91-6831      TCGA-91-6835 
"CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE"   "CNBD1 MUTATED" "CNBD1 WILD-TYPE" 
     TCGA-91-6836 
"CNBD1 WILD-TYPE" 
     TCGA-05-4249      TCGA-05-4250      TCGA-05-4382      TCGA-05-4384 
"CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" 
     TCGA-05-4390      TCGA-05-4396      TCGA-05-4397      TCGA-05-4398 
  "CNBD1 MUTATED" "CNBD1 WILD-TYPE"   "CNBD1 MUTATED"   "CNBD1 MUTATED" 
     TCGA-05-4402      TCGA-05-4405      TCGA-05-4415      TCGA-05-4417 
"CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" 
     TCGA-05-4418      TCGA-05-4420      TCGA-05-4424      TCGA-05-4426 
"CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" 
     TCGA-05-4427      TCGA-05-4430      TCGA-05-4432      TCGA-05-4433 
  "CNBD1 MUTATED" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" 
     TCGA-05-4434      TCGA-05-5420      TCGA-05-5423      TCGA-05-5425 
"CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" 
     TCGA-05-5429      TCGA-05-5715      TCGA-35-3615      TCGA-35-4122 
"CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" 
     TCGA-35-4123      TCGA-35-5375      TCGA-38-4625      TCGA-38-4626 
"CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" 
     TCGA-38-4627      TCGA-38-4628      TCGA-38-4629      TCGA-38-4630 
"CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" 
     TCGA-38-4631      TCGA-38-4632      TCGA-38-6178      TCGA-44-2655 
"CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" 
     TCGA-44-2656      TCGA-44-2657      TCGA-44-2659      TCGA-44-2661 
"CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" 
     TCGA-44-2662      TCGA-44-2665      TCGA-44-2666      TCGA-44-2668 
"CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" 
     TCGA-44-3396      TCGA-44-3398      TCGA-44-3918      TCGA-44-3919 
"CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" 
     TCGA-44-4112      TCGA-44-5643      TCGA-44-5645      TCGA-44-6144 
"CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" 
     TCGA-44-6145      TCGA-44-6146      TCGA-44-6147      TCGA-44-6148 
"CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" 
     TCGA-44-6774      TCGA-44-6775      TCGA-44-6776      TCGA-44-6777 
"CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" 
     TCGA-44-6778      TCGA-44-6779      TCGA-49-4486      TCGA-49-4487 
"CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" 
     TCGA-49-4488      TCGA-49-4490      TCGA-49-4494      TCGA-49-4501 
"CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" 
     TCGA-49-4505      TCGA-49-4506      TCGA-49-4507      TCGA-49-4510 
"CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" 
     TCGA-49-4512      TCGA-49-4514      TCGA-49-6742      TCGA-49-6743 
"CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE"   "CNBD1 MUTATED" 
     TCGA-49-6744      TCGA-49-6745      TCGA-50-5044      TCGA-50-5045 
"CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" 
     TCGA-50-5049      TCGA-50-5051      TCGA-50-5055      TCGA-50-5066 
"CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" 
     TCGA-50-5068      TCGA-50-5072      TCGA-50-5930      TCGA-50-5931 
"CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE"   "CNBD1 MUTATED" 
     TCGA-50-5932      TCGA-50-5933      TCGA-50-5935      TCGA-50-5936 
"CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" 
     TCGA-50-5939      TCGA-50-5941      TCGA-50-5942      TCGA-50-5944 
"CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" 
     TCGA-50-5946      TCGA-50-6590      TCGA-50-6591      TCGA-50-6592 
"CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" 
     TCGA-50-6593      TCGA-50-6594      TCGA-50-6595      TCGA-50-6597 
"CNBD1 WILD-TYPE"   "CNBD1 MUTATED" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" 
     TCGA-55-1592      TCGA-55-1594      TCGA-55-1595      TCGA-55-1596 
"CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE"   "CNBD1 MUTATED" "CNBD1 WILD-TYPE" 
     TCGA-55-5899      TCGA-55-6543      TCGA-55-6642      TCGA-55-6712 
"CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" 
     TCGA-64-1676      TCGA-64-1677      TCGA-64-1678      TCGA-64-1680 
"CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" 
     TCGA-64-5774      TCGA-64-5775      TCGA-64-5778      TCGA-64-5779 
"CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" 
     TCGA-64-5781      TCGA-64-5815      TCGA-67-3770      TCGA-67-3771 
"CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" 
     TCGA-67-3772      TCGA-67-3773      TCGA-67-3774      TCGA-67-6215 
"CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" 
     TCGA-67-6216      TCGA-67-6217      TCGA-71-6725      TCGA-73-4658 
"CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" 
     TCGA-73-4659      TCGA-73-4662      TCGA-73-4666      TCGA-73-4668 
"CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" 
     TCGA-73-4670      TCGA-73-4675      TCGA-73-4676      TCGA-73-4677 
"CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" 
     TCGA-91-6828      TCGA-91-6829      TCGA-91-6831      TCGA-91-6835 
"CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE"   "CNBD1 MUTATED" "CNBD1 WILD-TYPE" 
     TCGA-91-6836 
"CNBD1 WILD-TYPE" 
[1] "hr=" "1.2"
D16V2, continuous
D16V3, binary
[1] "tbl2"
                 cls
clus              [,1] [,2]
  CNBD1 MUTATED      8    2
  CNBD1 WILD-TYPE   85   77
        clus
vv       CNBD1 MUTATED CNBD1 WILD-TYPE
  FEMALE             8              85
  MALE               2              77
D16V4, continuous
D16V5, multiclass
D16V6, multiclass
    clus
vv   CNBD1 MUTATED CNBD1 WILD-TYPE
  T1             2              39
  T2             6             102
  T3             1              13
  T4             1               7
D16V7, multiclass
       clus
vv      CNBD1 MUTATED CNBD1 WILD-TYPE
  N0                5              90
  N1                2              35
  N2+N3             3              32
D16V8, multiclass
    clus
vv   CNBD1 MUTATED CNBD1 WILD-TYPE
  M0             8             129
  M1             0               9
  MX             2              20
D16V9, multiclass
     clus
vv    CNBD1 MUTATED CNBD1 WILD-TYPE
  I               5              83
  II              2              31
  III             3              36
  IV              0               9
D16V10, binary
[1] "tbl2"
                 cls
clus              [,1] [,2]
  CNBD1 MUTATED      0   10
  CNBD1 WILD-TYPE   16  146
     clus
vv    CNBD1 MUTATED CNBD1 WILD-TYPE
  NO              0              16
  YES            10             146
D16V11, continuous
D16V12, continuous
D16V13, multiclass
                                             clus
vv                                            CNBD1 MUTATED CNBD1 WILD-TYPE
  CURRENT REFORMED SMOKER FOR < OR = 15 YEARS             5              57
  CURRENT REFORMED SMOKER FOR > 15 YEARS                  0              46
  CURRENT SMOKER                                          4              24
  LIFELONG NON-SMOKER                                     0              24
D16V14, continuous

Clustering(17) Variable = OR2T4 MUTATION ANALYSIS
D17V1, survival
                 sevent
clus2              0  1
  OR2T4 MUTATED    4  6
  OR2T4 WILD-TYPE 95 44
  OR2T4 MUTATED OR2T4 WILD-TYPE 
             10             139 
  OR2T4 MUTATED OR2T4 WILD-TYPE 
              6              44 
$`OR2T4 MUTATED`
TCGA-05-4382 TCGA-05-4396 TCGA-05-5423 TCGA-35-3615 TCGA-35-5375 TCGA-44-6777 
       19.92         9.96         4.96         0.46         8.68        32.45 
TCGA-49-4487 TCGA-50-6592 TCGA-50-6594 TCGA-64-1677 
       28.11        25.51        12.16        20.65 

$`OR2T4 WILD-TYPE`
TCGA-05-4249 TCGA-05-4250 TCGA-05-4384 TCGA-05-4390 TCGA-05-4397 TCGA-05-4398 
       38.07         3.98        14.01        37.02        24.03        47.05 
TCGA-05-4402 TCGA-05-4405 TCGA-05-4415 TCGA-05-4417 TCGA-05-4418 TCGA-05-4420 
        8.02        20.05         2.96        14.93         8.98        29.95 
TCGA-05-4424 TCGA-05-4426 TCGA-05-4427 TCGA-05-4430 TCGA-05-4432 TCGA-05-4433 
       30.02        26.01        26.01        25.02        25.02        24.00 
TCGA-05-4434 TCGA-05-5420 TCGA-05-5425 TCGA-05-5429 TCGA-05-5715 TCGA-35-4122 
       15.02         1.02         2.96         0.99         2.04         7.36 
TCGA-35-4123 TCGA-38-4625 TCGA-38-4626 TCGA-38-4627 TCGA-38-4628 TCGA-38-4629 
        5.95        47.61        85.32        37.71        49.02        28.37 
TCGA-38-4630 TCGA-38-4631 TCGA-38-4632 TCGA-38-6178 TCGA-44-2655 TCGA-44-2656 
       35.28        11.64        44.61         5.19        18.87        19.10 
TCGA-44-2657 TCGA-44-2659 TCGA-44-2661 TCGA-44-2662 TCGA-44-2665 TCGA-44-2666 
       13.15        17.39         3.39        15.78        13.15         3.19 
TCGA-44-2668 TCGA-44-3396 TCGA-44-3398 TCGA-44-3918 TCGA-44-3919 TCGA-44-4112 
        8.09        10.22         8.32         6.44         6.21         4.60 
TCGA-44-5643 TCGA-44-5645 TCGA-44-6144 TCGA-44-6145 TCGA-44-6146 TCGA-44-6147 
        3.48         6.84         0.30         3.35         9.93         7.76 
TCGA-44-6148 TCGA-44-6774 TCGA-44-6775 TCGA-44-6776 TCGA-44-6778 TCGA-44-6779 
        3.12         5.42         2.70        63.72        36.49        16.41 
TCGA-49-4486 TCGA-49-4488 TCGA-49-4490 TCGA-49-4494 TCGA-49-4501 TCGA-49-4505 
       76.21        28.57        12.66        35.54        46.72        14.07 
TCGA-49-4506 TCGA-49-4507 TCGA-49-4510 TCGA-49-4512 TCGA-49-4514 TCGA-49-6742 
       32.84         8.81        29.46        29.75        43.20        15.02 
TCGA-49-6743 TCGA-49-6744 TCGA-49-6745 TCGA-50-5044 TCGA-50-5045 TCGA-50-5049 
       12.13        12.99         4.93        20.48        71.47        48.82 
TCGA-50-5051 TCGA-50-5055 TCGA-50-5066 TCGA-50-5068 TCGA-50-5072 TCGA-50-5930 
       14.96        25.81         9.76        49.28         8.05         9.27 
TCGA-50-5931 TCGA-50-5932 TCGA-50-5933 TCGA-50-5935 TCGA-50-5936 TCGA-50-5939 
        8.78        35.87        77.88        21.47         8.45        15.12 
TCGA-50-5941 TCGA-50-5942 TCGA-50-5944 TCGA-50-5946 TCGA-50-6590 TCGA-50-6591 
        9.37         4.44        12.26        11.47        42.31         3.88 
TCGA-50-6593 TCGA-50-6595 TCGA-50-6597 TCGA-55-1592 TCGA-55-1594 TCGA-55-1595 
       11.05         6.21        33.37        23.05        38.73        48.62 
TCGA-55-1596 TCGA-55-5899 TCGA-55-6543 TCGA-55-6642 TCGA-55-6712 TCGA-64-1676 
       45.17         2.86         0.07        32.61         0.79        56.81 
TCGA-64-1678 TCGA-64-1680 TCGA-64-5774 TCGA-64-5775 TCGA-64-5778 TCGA-64-5779 
       39.09        37.02        83.84         0.10        30.44        16.67 
TCGA-64-5781 TCGA-64-5815 TCGA-67-3770 TCGA-67-3771 TCGA-67-3772 TCGA-67-3773 
       39.52         7.33         0.99         1.97         0.59         2.04 
TCGA-67-3774 TCGA-67-6215 TCGA-67-6216 TCGA-67-6217 TCGA-71-6725 TCGA-73-4658 
        0.59         0.89         0.69        13.87         2.01        52.57 
TCGA-73-4659 TCGA-73-4662 TCGA-73-4666 TCGA-73-4668 TCGA-73-4670 TCGA-73-4675 
       23.38        29.95        20.28        15.35         0.46         1.32 
TCGA-73-4676 TCGA-73-4677 TCGA-91-6828 TCGA-91-6829 TCGA-91-6831 TCGA-91-6835 
        4.01         1.25         1.22        41.33         1.28         1.15 
TCGA-91-6836 
        0.36 

  OR2T4 MUTATED OR2T4 WILD-TYPE 
           0.46            0.07 
  OR2T4 MUTATED OR2T4 WILD-TYPE 
          32.45           85.32 
  OR2T4 MUTATED OR2T4 WILD-TYPE 
          16.04           13.87 
[1] "0.5 - 32.5 (16.0)" "0.1 - 85.3 (13.9)"
     TCGA-05-4249      TCGA-05-4250      TCGA-05-4382      TCGA-05-4384 
"OR2T4 WILD-TYPE" "OR2T4 WILD-TYPE"   "OR2T4 MUTATED" "OR2T4 WILD-TYPE" 
     TCGA-05-4390      TCGA-05-4396      TCGA-05-4397      TCGA-05-4398 
"OR2T4 WILD-TYPE"   "OR2T4 MUTATED" "OR2T4 WILD-TYPE" "OR2T4 WILD-TYPE" 
     TCGA-05-4402      TCGA-05-4405      TCGA-05-4415      TCGA-05-4417 
"OR2T4 WILD-TYPE" "OR2T4 WILD-TYPE" "OR2T4 WILD-TYPE" "OR2T4 WILD-TYPE" 
     TCGA-05-4418      TCGA-05-4420      TCGA-05-4424      TCGA-05-4426 
"OR2T4 WILD-TYPE" "OR2T4 WILD-TYPE" "OR2T4 WILD-TYPE" "OR2T4 WILD-TYPE" 
     TCGA-05-4427      TCGA-05-4430      TCGA-05-4432      TCGA-05-4433 
"OR2T4 WILD-TYPE" "OR2T4 WILD-TYPE" "OR2T4 WILD-TYPE" "OR2T4 WILD-TYPE" 
     TCGA-05-4434      TCGA-05-5420      TCGA-05-5423      TCGA-05-5425 
"OR2T4 WILD-TYPE" "OR2T4 WILD-TYPE"   "OR2T4 MUTATED" "OR2T4 WILD-TYPE" 
     TCGA-05-5429      TCGA-05-5715      TCGA-35-3615      TCGA-35-4122 
"OR2T4 WILD-TYPE" "OR2T4 WILD-TYPE"   "OR2T4 MUTATED" "OR2T4 WILD-TYPE" 
     TCGA-35-4123      TCGA-35-5375      TCGA-38-4625      TCGA-38-4626 
"OR2T4 WILD-TYPE"   "OR2T4 MUTATED" "OR2T4 WILD-TYPE" "OR2T4 WILD-TYPE" 
     TCGA-38-4627      TCGA-38-4628      TCGA-38-4629      TCGA-38-4630 
"OR2T4 WILD-TYPE" "OR2T4 WILD-TYPE" "OR2T4 WILD-TYPE" "OR2T4 WILD-TYPE" 
     TCGA-38-4631      TCGA-38-4632      TCGA-38-6178      TCGA-44-2655 
"OR2T4 WILD-TYPE" "OR2T4 WILD-TYPE" "OR2T4 WILD-TYPE" "OR2T4 WILD-TYPE" 
     TCGA-44-2656      TCGA-44-2657      TCGA-44-2659      TCGA-44-2661 
"OR2T4 WILD-TYPE" "OR2T4 WILD-TYPE" "OR2T4 WILD-TYPE" "OR2T4 WILD-TYPE" 
     TCGA-44-2662      TCGA-44-2665      TCGA-44-2666      TCGA-44-2668 
"OR2T4 WILD-TYPE" "OR2T4 WILD-TYPE" "OR2T4 WILD-TYPE" "OR2T4 WILD-TYPE" 
     TCGA-44-3396      TCGA-44-3398      TCGA-44-3918      TCGA-44-3919 
"OR2T4 WILD-TYPE" "OR2T4 WILD-TYPE" "OR2T4 WILD-TYPE" "OR2T4 WILD-TYPE" 
     TCGA-44-4112      TCGA-44-5643      TCGA-44-5645      TCGA-44-6144 
"OR2T4 WILD-TYPE" "OR2T4 WILD-TYPE" "OR2T4 WILD-TYPE" "OR2T4 WILD-TYPE" 
     TCGA-44-6145      TCGA-44-6146      TCGA-44-6147      TCGA-44-6148 
"OR2T4 WILD-TYPE" "OR2T4 WILD-TYPE" "OR2T4 WILD-TYPE" "OR2T4 WILD-TYPE" 
     TCGA-44-6774      TCGA-44-6775      TCGA-44-6776      TCGA-44-6777 
"OR2T4 WILD-TYPE" "OR2T4 WILD-TYPE" "OR2T4 WILD-TYPE"   "OR2T4 MUTATED" 
     TCGA-44-6778      TCGA-44-6779      TCGA-49-4486      TCGA-49-4487 
"OR2T4 WILD-TYPE" "OR2T4 WILD-TYPE" "OR2T4 WILD-TYPE"   "OR2T4 MUTATED" 
     TCGA-49-4488      TCGA-49-4490      TCGA-49-4494      TCGA-49-4501 
"OR2T4 WILD-TYPE" "OR2T4 WILD-TYPE" "OR2T4 WILD-TYPE" "OR2T4 WILD-TYPE" 
     TCGA-49-4505      TCGA-49-4506      TCGA-49-4507      TCGA-49-4510 
"OR2T4 WILD-TYPE" "OR2T4 WILD-TYPE" "OR2T4 WILD-TYPE" "OR2T4 WILD-TYPE" 
     TCGA-49-4512      TCGA-49-4514      TCGA-49-6742      TCGA-49-6743 
"OR2T4 WILD-TYPE" "OR2T4 WILD-TYPE" "OR2T4 WILD-TYPE" "OR2T4 WILD-TYPE" 
     TCGA-49-6744      TCGA-49-6745      TCGA-50-5044      TCGA-50-5045 
"OR2T4 WILD-TYPE" "OR2T4 WILD-TYPE" "OR2T4 WILD-TYPE" "OR2T4 WILD-TYPE" 
     TCGA-50-5049      TCGA-50-5051      TCGA-50-5055      TCGA-50-5066 
"OR2T4 WILD-TYPE" "OR2T4 WILD-TYPE" "OR2T4 WILD-TYPE" "OR2T4 WILD-TYPE" 
     TCGA-50-5068      TCGA-50-5072      TCGA-50-5930      TCGA-50-5931 
"OR2T4 WILD-TYPE" "OR2T4 WILD-TYPE" "OR2T4 WILD-TYPE" "OR2T4 WILD-TYPE" 
     TCGA-50-5932      TCGA-50-5933      TCGA-50-5935      TCGA-50-5936 
"OR2T4 WILD-TYPE" "OR2T4 WILD-TYPE" "OR2T4 WILD-TYPE" "OR2T4 WILD-TYPE" 
     TCGA-50-5939      TCGA-50-5941      TCGA-50-5942      TCGA-50-5944 
"OR2T4 WILD-TYPE" "OR2T4 WILD-TYPE" "OR2T4 WILD-TYPE" "OR2T4 WILD-TYPE" 
     TCGA-50-5946      TCGA-50-6590      TCGA-50-6591      TCGA-50-6592 
"OR2T4 WILD-TYPE" "OR2T4 WILD-TYPE" "OR2T4 WILD-TYPE"   "OR2T4 MUTATED" 
     TCGA-50-6593      TCGA-50-6594      TCGA-50-6595      TCGA-50-6597 
"OR2T4 WILD-TYPE"   "OR2T4 MUTATED" "OR2T4 WILD-TYPE" "OR2T4 WILD-TYPE" 
     TCGA-55-1592      TCGA-55-1594      TCGA-55-1595      TCGA-55-1596 
"OR2T4 WILD-TYPE" "OR2T4 WILD-TYPE" "OR2T4 WILD-TYPE" "OR2T4 WILD-TYPE" 
     TCGA-55-5899      TCGA-55-6543      TCGA-55-6642      TCGA-55-6712 
"OR2T4 WILD-TYPE" "OR2T4 WILD-TYPE" "OR2T4 WILD-TYPE" "OR2T4 WILD-TYPE" 
     TCGA-64-1676      TCGA-64-1677      TCGA-64-1678      TCGA-64-1680 
"OR2T4 WILD-TYPE"   "OR2T4 MUTATED" "OR2T4 WILD-TYPE" "OR2T4 WILD-TYPE" 
     TCGA-64-5774      TCGA-64-5775      TCGA-64-5778      TCGA-64-5779 
"OR2T4 WILD-TYPE" "OR2T4 WILD-TYPE" "OR2T4 WILD-TYPE" "OR2T4 WILD-TYPE" 
     TCGA-64-5781      TCGA-64-5815      TCGA-67-3770      TCGA-67-3771 
"OR2T4 WILD-TYPE" "OR2T4 WILD-TYPE" "OR2T4 WILD-TYPE" "OR2T4 WILD-TYPE" 
     TCGA-67-3772      TCGA-67-3773      TCGA-67-3774      TCGA-67-6215 
"OR2T4 WILD-TYPE" "OR2T4 WILD-TYPE" "OR2T4 WILD-TYPE" "OR2T4 WILD-TYPE" 
     TCGA-67-6216      TCGA-67-6217      TCGA-71-6725      TCGA-73-4658 
"OR2T4 WILD-TYPE" "OR2T4 WILD-TYPE" "OR2T4 WILD-TYPE" "OR2T4 WILD-TYPE" 
     TCGA-73-4659      TCGA-73-4662      TCGA-73-4666      TCGA-73-4668 
"OR2T4 WILD-TYPE" "OR2T4 WILD-TYPE" "OR2T4 WILD-TYPE" "OR2T4 WILD-TYPE" 
     TCGA-73-4670      TCGA-73-4675      TCGA-73-4676      TCGA-73-4677 
"OR2T4 WILD-TYPE" "OR2T4 WILD-TYPE" "OR2T4 WILD-TYPE" "OR2T4 WILD-TYPE" 
     TCGA-91-6828      TCGA-91-6829      TCGA-91-6831      TCGA-91-6835 
"OR2T4 WILD-TYPE" "OR2T4 WILD-TYPE" "OR2T4 WILD-TYPE" "OR2T4 WILD-TYPE" 
     TCGA-91-6836 
"OR2T4 WILD-TYPE" 
     TCGA-05-4249      TCGA-05-4250      TCGA-05-4382      TCGA-05-4384 
"OR2T4 WILD-TYPE" "OR2T4 WILD-TYPE"   "OR2T4 MUTATED" "OR2T4 WILD-TYPE" 
     TCGA-05-4390      TCGA-05-4396      TCGA-05-4397      TCGA-05-4398 
"OR2T4 WILD-TYPE"   "OR2T4 MUTATED" "OR2T4 WILD-TYPE" "OR2T4 WILD-TYPE" 
     TCGA-05-4402      TCGA-05-4405      TCGA-05-4415      TCGA-05-4417 
"OR2T4 WILD-TYPE" "OR2T4 WILD-TYPE" "OR2T4 WILD-TYPE" "OR2T4 WILD-TYPE" 
     TCGA-05-4418      TCGA-05-4420      TCGA-05-4424      TCGA-05-4426 
"OR2T4 WILD-TYPE" "OR2T4 WILD-TYPE" "OR2T4 WILD-TYPE" "OR2T4 WILD-TYPE" 
     TCGA-05-4427      TCGA-05-4430      TCGA-05-4432      TCGA-05-4433 
"OR2T4 WILD-TYPE" "OR2T4 WILD-TYPE" "OR2T4 WILD-TYPE" "OR2T4 WILD-TYPE" 
     TCGA-05-4434      TCGA-05-5420      TCGA-05-5423      TCGA-05-5425 
"OR2T4 WILD-TYPE" "OR2T4 WILD-TYPE"   "OR2T4 MUTATED" "OR2T4 WILD-TYPE" 
     TCGA-05-5429      TCGA-05-5715      TCGA-35-3615      TCGA-35-4122 
"OR2T4 WILD-TYPE" "OR2T4 WILD-TYPE"   "OR2T4 MUTATED" "OR2T4 WILD-TYPE" 
     TCGA-35-4123      TCGA-35-5375      TCGA-38-4625      TCGA-38-4626 
"OR2T4 WILD-TYPE"   "OR2T4 MUTATED" "OR2T4 WILD-TYPE" "OR2T4 WILD-TYPE" 
     TCGA-38-4627      TCGA-38-4628      TCGA-38-4629      TCGA-38-4630 
"OR2T4 WILD-TYPE" "OR2T4 WILD-TYPE" "OR2T4 WILD-TYPE" "OR2T4 WILD-TYPE" 
     TCGA-38-4631      TCGA-38-4632      TCGA-38-6178      TCGA-44-2655 
"OR2T4 WILD-TYPE" "OR2T4 WILD-TYPE" "OR2T4 WILD-TYPE" "OR2T4 WILD-TYPE" 
     TCGA-44-2656      TCGA-44-2657      TCGA-44-2659      TCGA-44-2661 
"OR2T4 WILD-TYPE" "OR2T4 WILD-TYPE" "OR2T4 WILD-TYPE" "OR2T4 WILD-TYPE" 
     TCGA-44-2662      TCGA-44-2665      TCGA-44-2666      TCGA-44-2668 
"OR2T4 WILD-TYPE" "OR2T4 WILD-TYPE" "OR2T4 WILD-TYPE" "OR2T4 WILD-TYPE" 
     TCGA-44-3396      TCGA-44-3398      TCGA-44-3918      TCGA-44-3919 
"OR2T4 WILD-TYPE" "OR2T4 WILD-TYPE" "OR2T4 WILD-TYPE" "OR2T4 WILD-TYPE" 
     TCGA-44-4112      TCGA-44-5643      TCGA-44-5645      TCGA-44-6144 
"OR2T4 WILD-TYPE" "OR2T4 WILD-TYPE" "OR2T4 WILD-TYPE" "OR2T4 WILD-TYPE" 
     TCGA-44-6145      TCGA-44-6146      TCGA-44-6147      TCGA-44-6148 
"OR2T4 WILD-TYPE" "OR2T4 WILD-TYPE" "OR2T4 WILD-TYPE" "OR2T4 WILD-TYPE" 
     TCGA-44-6774      TCGA-44-6775      TCGA-44-6776      TCGA-44-6777 
"OR2T4 WILD-TYPE" "OR2T4 WILD-TYPE" "OR2T4 WILD-TYPE"   "OR2T4 MUTATED" 
     TCGA-44-6778      TCGA-44-6779      TCGA-49-4486      TCGA-49-4487 
"OR2T4 WILD-TYPE" "OR2T4 WILD-TYPE" "OR2T4 WILD-TYPE"   "OR2T4 MUTATED" 
     TCGA-49-4488      TCGA-49-4490      TCGA-49-4494      TCGA-49-4501 
"OR2T4 WILD-TYPE" "OR2T4 WILD-TYPE" "OR2T4 WILD-TYPE" "OR2T4 WILD-TYPE" 
     TCGA-49-4505      TCGA-49-4506      TCGA-49-4507      TCGA-49-4510 
"OR2T4 WILD-TYPE" "OR2T4 WILD-TYPE" "OR2T4 WILD-TYPE" "OR2T4 WILD-TYPE" 
     TCGA-49-4512      TCGA-49-4514      TCGA-49-6742      TCGA-49-6743 
"OR2T4 WILD-TYPE" "OR2T4 WILD-TYPE" "OR2T4 WILD-TYPE" "OR2T4 WILD-TYPE" 
     TCGA-49-6744      TCGA-49-6745      TCGA-50-5044      TCGA-50-5045 
"OR2T4 WILD-TYPE" "OR2T4 WILD-TYPE" "OR2T4 WILD-TYPE" "OR2T4 WILD-TYPE" 
     TCGA-50-5049      TCGA-50-5051      TCGA-50-5055      TCGA-50-5066 
"OR2T4 WILD-TYPE" "OR2T4 WILD-TYPE" "OR2T4 WILD-TYPE" "OR2T4 WILD-TYPE" 
     TCGA-50-5068      TCGA-50-5072      TCGA-50-5930      TCGA-50-5931 
"OR2T4 WILD-TYPE" "OR2T4 WILD-TYPE" "OR2T4 WILD-TYPE" "OR2T4 WILD-TYPE" 
     TCGA-50-5932      TCGA-50-5933      TCGA-50-5935      TCGA-50-5936 
"OR2T4 WILD-TYPE" "OR2T4 WILD-TYPE" "OR2T4 WILD-TYPE" "OR2T4 WILD-TYPE" 
     TCGA-50-5939      TCGA-50-5941      TCGA-50-5942      TCGA-50-5944 
"OR2T4 WILD-TYPE" "OR2T4 WILD-TYPE" "OR2T4 WILD-TYPE" "OR2T4 WILD-TYPE" 
     TCGA-50-5946      TCGA-50-6590      TCGA-50-6591      TCGA-50-6592 
"OR2T4 WILD-TYPE" "OR2T4 WILD-TYPE" "OR2T4 WILD-TYPE"   "OR2T4 MUTATED" 
     TCGA-50-6593      TCGA-50-6594      TCGA-50-6595      TCGA-50-6597 
"OR2T4 WILD-TYPE"   "OR2T4 MUTATED" "OR2T4 WILD-TYPE" "OR2T4 WILD-TYPE" 
     TCGA-55-1592      TCGA-55-1594      TCGA-55-1595      TCGA-55-1596 
"OR2T4 WILD-TYPE" "OR2T4 WILD-TYPE" "OR2T4 WILD-TYPE" "OR2T4 WILD-TYPE" 
     TCGA-55-5899      TCGA-55-6543      TCGA-55-6642      TCGA-55-6712 
"OR2T4 WILD-TYPE" "OR2T4 WILD-TYPE" "OR2T4 WILD-TYPE" "OR2T4 WILD-TYPE" 
     TCGA-64-1676      TCGA-64-1677      TCGA-64-1678      TCGA-64-1680 
"OR2T4 WILD-TYPE"   "OR2T4 MUTATED" "OR2T4 WILD-TYPE" "OR2T4 WILD-TYPE" 
     TCGA-64-5774      TCGA-64-5775      TCGA-64-5778      TCGA-64-5779 
"OR2T4 WILD-TYPE" "OR2T4 WILD-TYPE" "OR2T4 WILD-TYPE" "OR2T4 WILD-TYPE" 
     TCGA-64-5781      TCGA-64-5815      TCGA-67-3770      TCGA-67-3771 
"OR2T4 WILD-TYPE" "OR2T4 WILD-TYPE" "OR2T4 WILD-TYPE" "OR2T4 WILD-TYPE" 
     TCGA-67-3772      TCGA-67-3773      TCGA-67-3774      TCGA-67-6215 
"OR2T4 WILD-TYPE" "OR2T4 WILD-TYPE" "OR2T4 WILD-TYPE" "OR2T4 WILD-TYPE" 
     TCGA-67-6216      TCGA-67-6217      TCGA-71-6725      TCGA-73-4658 
"OR2T4 WILD-TYPE" "OR2T4 WILD-TYPE" "OR2T4 WILD-TYPE" "OR2T4 WILD-TYPE" 
     TCGA-73-4659      TCGA-73-4662      TCGA-73-4666      TCGA-73-4668 
"OR2T4 WILD-TYPE" "OR2T4 WILD-TYPE" "OR2T4 WILD-TYPE" "OR2T4 WILD-TYPE" 
     TCGA-73-4670      TCGA-73-4675      TCGA-73-4676      TCGA-73-4677 
"OR2T4 WILD-TYPE" "OR2T4 WILD-TYPE" "OR2T4 WILD-TYPE" "OR2T4 WILD-TYPE" 
     TCGA-91-6828      TCGA-91-6829      TCGA-91-6831      TCGA-91-6835 
"OR2T4 WILD-TYPE" "OR2T4 WILD-TYPE" "OR2T4 WILD-TYPE" "OR2T4 WILD-TYPE" 
     TCGA-91-6836 
"OR2T4 WILD-TYPE" 
     TCGA-05-4249      TCGA-05-4250      TCGA-05-4382      TCGA-05-4384 
"OR2T4 WILD-TYPE" "OR2T4 WILD-TYPE"   "OR2T4 MUTATED" "OR2T4 WILD-TYPE" 
     TCGA-05-4390      TCGA-05-4396      TCGA-05-4397      TCGA-05-4398 
"OR2T4 WILD-TYPE"   "OR2T4 MUTATED" "OR2T4 WILD-TYPE" "OR2T4 WILD-TYPE" 
     TCGA-05-4402      TCGA-05-4405      TCGA-05-4415      TCGA-05-4417 
"OR2T4 WILD-TYPE" "OR2T4 WILD-TYPE" "OR2T4 WILD-TYPE" "OR2T4 WILD-TYPE" 
     TCGA-05-4418      TCGA-05-4420      TCGA-05-4424      TCGA-05-4426 
"OR2T4 WILD-TYPE" "OR2T4 WILD-TYPE" "OR2T4 WILD-TYPE" "OR2T4 WILD-TYPE" 
     TCGA-05-4427      TCGA-05-4430      TCGA-05-4432      TCGA-05-4433 
"OR2T4 WILD-TYPE" "OR2T4 WILD-TYPE" "OR2T4 WILD-TYPE" "OR2T4 WILD-TYPE" 
     TCGA-05-4434      TCGA-05-5420      TCGA-05-5423      TCGA-05-5425 
"OR2T4 WILD-TYPE" "OR2T4 WILD-TYPE"   "OR2T4 MUTATED" "OR2T4 WILD-TYPE" 
     TCGA-05-5429      TCGA-05-5715      TCGA-35-3615      TCGA-35-4122 
"OR2T4 WILD-TYPE" "OR2T4 WILD-TYPE"   "OR2T4 MUTATED" "OR2T4 WILD-TYPE" 
     TCGA-35-4123      TCGA-35-5375      TCGA-38-4625      TCGA-38-4626 
"OR2T4 WILD-TYPE"   "OR2T4 MUTATED" "OR2T4 WILD-TYPE" "OR2T4 WILD-TYPE" 
     TCGA-38-4627      TCGA-38-4628      TCGA-38-4629      TCGA-38-4630 
"OR2T4 WILD-TYPE" "OR2T4 WILD-TYPE" "OR2T4 WILD-TYPE" "OR2T4 WILD-TYPE" 
     TCGA-38-4631      TCGA-38-4632      TCGA-38-6178      TCGA-44-2655 
"OR2T4 WILD-TYPE" "OR2T4 WILD-TYPE" "OR2T4 WILD-TYPE" "OR2T4 WILD-TYPE" 
     TCGA-44-2656      TCGA-44-2657      TCGA-44-2659      TCGA-44-2661 
"OR2T4 WILD-TYPE" "OR2T4 WILD-TYPE" "OR2T4 WILD-TYPE" "OR2T4 WILD-TYPE" 
     TCGA-44-2662      TCGA-44-2665      TCGA-44-2666      TCGA-44-2668 
"OR2T4 WILD-TYPE" "OR2T4 WILD-TYPE" "OR2T4 WILD-TYPE" "OR2T4 WILD-TYPE" 
     TCGA-44-3396      TCGA-44-3398      TCGA-44-3918      TCGA-44-3919 
"OR2T4 WILD-TYPE" "OR2T4 WILD-TYPE" "OR2T4 WILD-TYPE" "OR2T4 WILD-TYPE" 
     TCGA-44-4112      TCGA-44-5643      TCGA-44-5645      TCGA-44-6144 
"OR2T4 WILD-TYPE" "OR2T4 WILD-TYPE" "OR2T4 WILD-TYPE" "OR2T4 WILD-TYPE" 
     TCGA-44-6145      TCGA-44-6146      TCGA-44-6147      TCGA-44-6148 
"OR2T4 WILD-TYPE" "OR2T4 WILD-TYPE" "OR2T4 WILD-TYPE" "OR2T4 WILD-TYPE" 
     TCGA-44-6774      TCGA-44-6775      TCGA-44-6776      TCGA-44-6777 
"OR2T4 WILD-TYPE" "OR2T4 WILD-TYPE" "OR2T4 WILD-TYPE"   "OR2T4 MUTATED" 
     TCGA-44-6778      TCGA-44-6779      TCGA-49-4486      TCGA-49-4487 
"OR2T4 WILD-TYPE" "OR2T4 WILD-TYPE" "OR2T4 WILD-TYPE"   "OR2T4 MUTATED" 
     TCGA-49-4488      TCGA-49-4490      TCGA-49-4494      TCGA-49-4501 
"OR2T4 WILD-TYPE" "OR2T4 WILD-TYPE" "OR2T4 WILD-TYPE" "OR2T4 WILD-TYPE" 
     TCGA-49-4505      TCGA-49-4506      TCGA-49-4507      TCGA-49-4510 
"OR2T4 WILD-TYPE" "OR2T4 WILD-TYPE" "OR2T4 WILD-TYPE" "OR2T4 WILD-TYPE" 
     TCGA-49-4512      TCGA-49-4514      TCGA-49-6742      TCGA-49-6743 
"OR2T4 WILD-TYPE" "OR2T4 WILD-TYPE" "OR2T4 WILD-TYPE" "OR2T4 WILD-TYPE" 
     TCGA-49-6744      TCGA-49-6745      TCGA-50-5044      TCGA-50-5045 
"OR2T4 WILD-TYPE" "OR2T4 WILD-TYPE" "OR2T4 WILD-TYPE" "OR2T4 WILD-TYPE" 
     TCGA-50-5049      TCGA-50-5051      TCGA-50-5055      TCGA-50-5066 
"OR2T4 WILD-TYPE" "OR2T4 WILD-TYPE" "OR2T4 WILD-TYPE" "OR2T4 WILD-TYPE" 
     TCGA-50-5068      TCGA-50-5072      TCGA-50-5930      TCGA-50-5931 
"OR2T4 WILD-TYPE" "OR2T4 WILD-TYPE" "OR2T4 WILD-TYPE" "OR2T4 WILD-TYPE" 
     TCGA-50-5932      TCGA-50-5933      TCGA-50-5935      TCGA-50-5936 
"OR2T4 WILD-TYPE" "OR2T4 WILD-TYPE" "OR2T4 WILD-TYPE" "OR2T4 WILD-TYPE" 
     TCGA-50-5939      TCGA-50-5941      TCGA-50-5942      TCGA-50-5944 
"OR2T4 WILD-TYPE" "OR2T4 WILD-TYPE" "OR2T4 WILD-TYPE" "OR2T4 WILD-TYPE" 
     TCGA-50-5946      TCGA-50-6590      TCGA-50-6591      TCGA-50-6592 
"OR2T4 WILD-TYPE" "OR2T4 WILD-TYPE" "OR2T4 WILD-TYPE"   "OR2T4 MUTATED" 
     TCGA-50-6593      TCGA-50-6594      TCGA-50-6595      TCGA-50-6597 
"OR2T4 WILD-TYPE"   "OR2T4 MUTATED" "OR2T4 WILD-TYPE" "OR2T4 WILD-TYPE" 
     TCGA-55-1592      TCGA-55-1594      TCGA-55-1595      TCGA-55-1596 
"OR2T4 WILD-TYPE" "OR2T4 WILD-TYPE" "OR2T4 WILD-TYPE" "OR2T4 WILD-TYPE" 
     TCGA-55-5899      TCGA-55-6543      TCGA-55-6642      TCGA-55-6712 
"OR2T4 WILD-TYPE" "OR2T4 WILD-TYPE" "OR2T4 WILD-TYPE" "OR2T4 WILD-TYPE" 
     TCGA-64-1676      TCGA-64-1677      TCGA-64-1678      TCGA-64-1680 
"OR2T4 WILD-TYPE"   "OR2T4 MUTATED" "OR2T4 WILD-TYPE" "OR2T4 WILD-TYPE" 
     TCGA-64-5774      TCGA-64-5775      TCGA-64-5778      TCGA-64-5779 
"OR2T4 WILD-TYPE" "OR2T4 WILD-TYPE" "OR2T4 WILD-TYPE" "OR2T4 WILD-TYPE" 
     TCGA-64-5781      TCGA-64-5815      TCGA-67-3770      TCGA-67-3771 
"OR2T4 WILD-TYPE" "OR2T4 WILD-TYPE" "OR2T4 WILD-TYPE" "OR2T4 WILD-TYPE" 
     TCGA-67-3772      TCGA-67-3773      TCGA-67-3774      TCGA-67-6215 
"OR2T4 WILD-TYPE" "OR2T4 WILD-TYPE" "OR2T4 WILD-TYPE" "OR2T4 WILD-TYPE" 
     TCGA-67-6216      TCGA-67-6217      TCGA-71-6725      TCGA-73-4658 
"OR2T4 WILD-TYPE" "OR2T4 WILD-TYPE" "OR2T4 WILD-TYPE" "OR2T4 WILD-TYPE" 
     TCGA-73-4659      TCGA-73-4662      TCGA-73-4666      TCGA-73-4668 
"OR2T4 WILD-TYPE" "OR2T4 WILD-TYPE" "OR2T4 WILD-TYPE" "OR2T4 WILD-TYPE" 
     TCGA-73-4670      TCGA-73-4675      TCGA-73-4676      TCGA-73-4677 
"OR2T4 WILD-TYPE" "OR2T4 WILD-TYPE" "OR2T4 WILD-TYPE" "OR2T4 WILD-TYPE" 
     TCGA-91-6828      TCGA-91-6829      TCGA-91-6831      TCGA-91-6835 
"OR2T4 WILD-TYPE" "OR2T4 WILD-TYPE" "OR2T4 WILD-TYPE" "OR2T4 WILD-TYPE" 
     TCGA-91-6836 
"OR2T4 WILD-TYPE" 
[1] "hr=" "3.1"
D17V2, continuous
D17V3, binary
[1] "tbl2"
                 cls
clus              [,1] [,2]
  OR2T4 MUTATED      6    7
  OR2T4 WILD-TYPE   87   72
        clus
vv       OR2T4 MUTATED OR2T4 WILD-TYPE
  FEMALE             6              87
  MALE               7              72
D17V4, continuous
[1] "Remove cluster labels:" "OR2T4 MUTATED"         
clus
  OR2T4 MUTATED OR2T4 WILD-TYPE 
              2              10 
     TCGA-35-4122      TCGA-35-4123      TCGA-64-5778      TCGA-71-6725 
"OR2T4 WILD-TYPE" "OR2T4 WILD-TYPE" "OR2T4 WILD-TYPE" "OR2T4 WILD-TYPE" 
     TCGA-73-4659      TCGA-73-4662      TCGA-73-4666      TCGA-73-4668 
"OR2T4 WILD-TYPE" "OR2T4 WILD-TYPE" "OR2T4 WILD-TYPE" "OR2T4 WILD-TYPE" 
     TCGA-73-4676      TCGA-75-5122 
"OR2T4 WILD-TYPE" "OR2T4 WILD-TYPE" 
D17V5, multiclass
D17V6, multiclass
    clus
vv   OR2T4 MUTATED OR2T4 WILD-TYPE
  T1             1              40
  T2             8             100
  T3             2              12
  T4             2               6
D17V7, multiclass
       clus
vv      OR2T4 MUTATED OR2T4 WILD-TYPE
  N0                6              89
  N1                2              35
  N2+N3             4              31
D17V8, multiclass
    clus
vv   OR2T4 MUTATED OR2T4 WILD-TYPE
  M0            11             126
  M1             0               9
  MX             2              20
D17V9, multiclass
     clus
vv    OR2T4 MUTATED OR2T4 WILD-TYPE
  I               6              82
  II              2              31
  III             5              34
  IV              0               9
D17V10, binary
[1] "tbl2"
                 cls
clus              [,1] [,2]
  OR2T4 MUTATED      1   12
  OR2T4 WILD-TYPE   15  144
     clus
vv    OR2T4 MUTATED OR2T4 WILD-TYPE
  NO              1              15
  YES            12             144
D17V11, continuous
D17V12, continuous
D17V13, multiclass
                                             clus
vv                                            OR2T4 MUTATED OR2T4 WILD-TYPE
  CURRENT REFORMED SMOKER FOR < OR = 15 YEARS             7              55
  CURRENT REFORMED SMOKER FOR > 15 YEARS                  2              44
  CURRENT SMOKER                                          2              26
  LIFELONG NON-SMOKER                                     2              22
D17V14, continuous

Clustering(18) Variable = CD5L MUTATION ANALYSIS
D18V1, survival
                sevent
clus2             0  1
  CD5L MUTATED    6  4
  CD5L WILD-TYPE 93 46
  CD5L MUTATED CD5L WILD-TYPE 
            10            139 
  CD5L MUTATED CD5L WILD-TYPE 
             4             46 
$`CD5L MUTATED`
TCGA-05-4382 TCGA-05-4396 TCGA-05-4397 TCGA-44-2656 TCGA-49-4488 TCGA-50-5072 
       19.92         9.96        24.03        19.10        28.57         8.05 
TCGA-50-5933 TCGA-50-5941 TCGA-64-5778 TCGA-67-6215 
       77.88         9.37        30.44         0.89 

$`CD5L WILD-TYPE`
TCGA-05-4249 TCGA-05-4250 TCGA-05-4384 TCGA-05-4390 TCGA-05-4398 TCGA-05-4402 
       38.07         3.98        14.01        37.02        47.05         8.02 
TCGA-05-4405 TCGA-05-4415 TCGA-05-4417 TCGA-05-4418 TCGA-05-4420 TCGA-05-4424 
       20.05         2.96        14.93         8.98        29.95        30.02 
TCGA-05-4426 TCGA-05-4427 TCGA-05-4430 TCGA-05-4432 TCGA-05-4433 TCGA-05-4434 
       26.01        26.01        25.02        25.02        24.00        15.02 
TCGA-05-5420 TCGA-05-5423 TCGA-05-5425 TCGA-05-5429 TCGA-05-5715 TCGA-35-3615 
        1.02         4.96         2.96         0.99         2.04         0.46 
TCGA-35-4122 TCGA-35-4123 TCGA-35-5375 TCGA-38-4625 TCGA-38-4626 TCGA-38-4627 
        7.36         5.95         8.68        47.61        85.32        37.71 
TCGA-38-4628 TCGA-38-4629 TCGA-38-4630 TCGA-38-4631 TCGA-38-4632 TCGA-38-6178 
       49.02        28.37        35.28        11.64        44.61         5.19 
TCGA-44-2655 TCGA-44-2657 TCGA-44-2659 TCGA-44-2661 TCGA-44-2662 TCGA-44-2665 
       18.87        13.15        17.39         3.39        15.78        13.15 
TCGA-44-2666 TCGA-44-2668 TCGA-44-3396 TCGA-44-3398 TCGA-44-3918 TCGA-44-3919 
        3.19         8.09        10.22         8.32         6.44         6.21 
TCGA-44-4112 TCGA-44-5643 TCGA-44-5645 TCGA-44-6144 TCGA-44-6145 TCGA-44-6146 
        4.60         3.48         6.84         0.30         3.35         9.93 
TCGA-44-6147 TCGA-44-6148 TCGA-44-6774 TCGA-44-6775 TCGA-44-6776 TCGA-44-6777 
        7.76         3.12         5.42         2.70        63.72        32.45 
TCGA-44-6778 TCGA-44-6779 TCGA-49-4486 TCGA-49-4487 TCGA-49-4490 TCGA-49-4494 
       36.49        16.41        76.21        28.11        12.66        35.54 
TCGA-49-4501 TCGA-49-4505 TCGA-49-4506 TCGA-49-4507 TCGA-49-4510 TCGA-49-4512 
       46.72        14.07        32.84         8.81        29.46        29.75 
TCGA-49-4514 TCGA-49-6742 TCGA-49-6743 TCGA-49-6744 TCGA-49-6745 TCGA-50-5044 
       43.20        15.02        12.13        12.99         4.93        20.48 
TCGA-50-5045 TCGA-50-5049 TCGA-50-5051 TCGA-50-5055 TCGA-50-5066 TCGA-50-5068 
       71.47        48.82        14.96        25.81         9.76        49.28 
TCGA-50-5930 TCGA-50-5931 TCGA-50-5932 TCGA-50-5935 TCGA-50-5936 TCGA-50-5939 
        9.27         8.78        35.87        21.47         8.45        15.12 
TCGA-50-5942 TCGA-50-5944 TCGA-50-5946 TCGA-50-6590 TCGA-50-6591 TCGA-50-6592 
        4.44        12.26        11.47        42.31         3.88        25.51 
TCGA-50-6593 TCGA-50-6594 TCGA-50-6595 TCGA-50-6597 TCGA-55-1592 TCGA-55-1594 
       11.05        12.16         6.21        33.37        23.05        38.73 
TCGA-55-1595 TCGA-55-1596 TCGA-55-5899 TCGA-55-6543 TCGA-55-6642 TCGA-55-6712 
       48.62        45.17         2.86         0.07        32.61         0.79 
TCGA-64-1676 TCGA-64-1677 TCGA-64-1678 TCGA-64-1680 TCGA-64-5774 TCGA-64-5775 
       56.81        20.65        39.09        37.02        83.84         0.10 
TCGA-64-5779 TCGA-64-5781 TCGA-64-5815 TCGA-67-3770 TCGA-67-3771 TCGA-67-3772 
       16.67        39.52         7.33         0.99         1.97         0.59 
TCGA-67-3773 TCGA-67-3774 TCGA-67-6216 TCGA-67-6217 TCGA-71-6725 TCGA-73-4658 
        2.04         0.59         0.69        13.87         2.01        52.57 
TCGA-73-4659 TCGA-73-4662 TCGA-73-4666 TCGA-73-4668 TCGA-73-4670 TCGA-73-4675 
       23.38        29.95        20.28        15.35         0.46         1.32 
TCGA-73-4676 TCGA-73-4677 TCGA-91-6828 TCGA-91-6829 TCGA-91-6831 TCGA-91-6835 
        4.01         1.25         1.22        41.33         1.28         1.15 
TCGA-91-6836 
        0.36 

  CD5L MUTATED CD5L WILD-TYPE 
          0.89           0.07 
  CD5L MUTATED CD5L WILD-TYPE 
         77.88          85.32 
  CD5L MUTATED CD5L WILD-TYPE 
         19.51          13.15 
[1] "0.9 - 77.9 (19.5)" "0.1 - 85.3 (13.2)"
    TCGA-05-4249     TCGA-05-4250     TCGA-05-4382     TCGA-05-4384 
"CD5L WILD-TYPE" "CD5L WILD-TYPE"   "CD5L MUTATED" "CD5L WILD-TYPE" 
    TCGA-05-4390     TCGA-05-4396     TCGA-05-4397     TCGA-05-4398 
"CD5L WILD-TYPE"   "CD5L MUTATED"   "CD5L MUTATED" "CD5L WILD-TYPE" 
    TCGA-05-4402     TCGA-05-4405     TCGA-05-4415     TCGA-05-4417 
"CD5L WILD-TYPE" "CD5L WILD-TYPE" "CD5L WILD-TYPE" "CD5L WILD-TYPE" 
    TCGA-05-4418     TCGA-05-4420     TCGA-05-4424     TCGA-05-4426 
"CD5L WILD-TYPE" "CD5L WILD-TYPE" "CD5L WILD-TYPE" "CD5L WILD-TYPE" 
    TCGA-05-4427     TCGA-05-4430     TCGA-05-4432     TCGA-05-4433 
"CD5L WILD-TYPE" "CD5L WILD-TYPE" "CD5L WILD-TYPE" "CD5L WILD-TYPE" 
    TCGA-05-4434     TCGA-05-5420     TCGA-05-5423     TCGA-05-5425 
"CD5L WILD-TYPE" "CD5L WILD-TYPE" "CD5L WILD-TYPE" "CD5L WILD-TYPE" 
    TCGA-05-5429     TCGA-05-5715     TCGA-35-3615     TCGA-35-4122 
"CD5L WILD-TYPE" "CD5L WILD-TYPE" "CD5L WILD-TYPE" "CD5L WILD-TYPE" 
    TCGA-35-4123     TCGA-35-5375     TCGA-38-4625     TCGA-38-4626 
"CD5L WILD-TYPE" "CD5L WILD-TYPE" "CD5L WILD-TYPE" "CD5L WILD-TYPE" 
    TCGA-38-4627     TCGA-38-4628     TCGA-38-4629     TCGA-38-4630 
"CD5L WILD-TYPE" "CD5L WILD-TYPE" "CD5L WILD-TYPE" "CD5L WILD-TYPE" 
    TCGA-38-4631     TCGA-38-4632     TCGA-38-6178     TCGA-44-2655 
"CD5L WILD-TYPE" "CD5L WILD-TYPE" "CD5L WILD-TYPE" "CD5L WILD-TYPE" 
    TCGA-44-2656     TCGA-44-2657     TCGA-44-2659     TCGA-44-2661 
  "CD5L MUTATED" "CD5L WILD-TYPE" "CD5L WILD-TYPE" "CD5L WILD-TYPE" 
    TCGA-44-2662     TCGA-44-2665     TCGA-44-2666     TCGA-44-2668 
"CD5L WILD-TYPE" "CD5L WILD-TYPE" "CD5L WILD-TYPE" "CD5L WILD-TYPE" 
    TCGA-44-3396     TCGA-44-3398     TCGA-44-3918     TCGA-44-3919 
"CD5L WILD-TYPE" "CD5L WILD-TYPE" "CD5L WILD-TYPE" "CD5L WILD-TYPE" 
    TCGA-44-4112     TCGA-44-5643     TCGA-44-5645     TCGA-44-6144 
"CD5L WILD-TYPE" "CD5L WILD-TYPE" "CD5L WILD-TYPE" "CD5L WILD-TYPE" 
    TCGA-44-6145     TCGA-44-6146     TCGA-44-6147     TCGA-44-6148 
"CD5L WILD-TYPE" "CD5L WILD-TYPE" "CD5L WILD-TYPE" "CD5L WILD-TYPE" 
    TCGA-44-6774     TCGA-44-6775     TCGA-44-6776     TCGA-44-6777 
"CD5L WILD-TYPE" "CD5L WILD-TYPE" "CD5L WILD-TYPE" "CD5L WILD-TYPE" 
    TCGA-44-6778     TCGA-44-6779     TCGA-49-4486     TCGA-49-4487 
"CD5L WILD-TYPE" "CD5L WILD-TYPE" "CD5L WILD-TYPE" "CD5L WILD-TYPE" 
    TCGA-49-4488     TCGA-49-4490     TCGA-49-4494     TCGA-49-4501 
  "CD5L MUTATED" "CD5L WILD-TYPE" "CD5L WILD-TYPE" "CD5L WILD-TYPE" 
    TCGA-49-4505     TCGA-49-4506     TCGA-49-4507     TCGA-49-4510 
"CD5L WILD-TYPE" "CD5L WILD-TYPE" "CD5L WILD-TYPE" "CD5L WILD-TYPE" 
    TCGA-49-4512     TCGA-49-4514     TCGA-49-6742     TCGA-49-6743 
"CD5L WILD-TYPE" "CD5L WILD-TYPE" "CD5L WILD-TYPE" "CD5L WILD-TYPE" 
    TCGA-49-6744     TCGA-49-6745     TCGA-50-5044     TCGA-50-5045 
"CD5L WILD-TYPE" "CD5L WILD-TYPE" "CD5L WILD-TYPE" "CD5L WILD-TYPE" 
    TCGA-50-5049     TCGA-50-5051     TCGA-50-5055     TCGA-50-5066 
"CD5L WILD-TYPE" "CD5L WILD-TYPE" "CD5L WILD-TYPE" "CD5L WILD-TYPE" 
    TCGA-50-5068     TCGA-50-5072     TCGA-50-5930     TCGA-50-5931 
"CD5L WILD-TYPE"   "CD5L MUTATED" "CD5L WILD-TYPE" "CD5L WILD-TYPE" 
    TCGA-50-5932     TCGA-50-5933     TCGA-50-5935     TCGA-50-5936 
"CD5L WILD-TYPE"   "CD5L MUTATED" "CD5L WILD-TYPE" "CD5L WILD-TYPE" 
    TCGA-50-5939     TCGA-50-5941     TCGA-50-5942     TCGA-50-5944 
"CD5L WILD-TYPE"   "CD5L MUTATED" "CD5L WILD-TYPE" "CD5L WILD-TYPE" 
    TCGA-50-5946     TCGA-50-6590     TCGA-50-6591     TCGA-50-6592 
"CD5L WILD-TYPE" "CD5L WILD-TYPE" "CD5L WILD-TYPE" "CD5L WILD-TYPE" 
    TCGA-50-6593     TCGA-50-6594     TCGA-50-6595     TCGA-50-6597 
"CD5L WILD-TYPE" "CD5L WILD-TYPE" "CD5L WILD-TYPE" "CD5L WILD-TYPE" 
    TCGA-55-1592     TCGA-55-1594     TCGA-55-1595     TCGA-55-1596 
"CD5L WILD-TYPE" "CD5L WILD-TYPE" "CD5L WILD-TYPE" "CD5L WILD-TYPE" 
    TCGA-55-5899     TCGA-55-6543     TCGA-55-6642     TCGA-55-6712 
"CD5L WILD-TYPE" "CD5L WILD-TYPE" "CD5L WILD-TYPE" "CD5L WILD-TYPE" 
    TCGA-64-1676     TCGA-64-1677     TCGA-64-1678     TCGA-64-1680 
"CD5L WILD-TYPE" "CD5L WILD-TYPE" "CD5L WILD-TYPE" "CD5L WILD-TYPE" 
    TCGA-64-5774     TCGA-64-5775     TCGA-64-5778     TCGA-64-5779 
"CD5L WILD-TYPE" "CD5L WILD-TYPE"   "CD5L MUTATED" "CD5L WILD-TYPE" 
    TCGA-64-5781     TCGA-64-5815     TCGA-67-3770     TCGA-67-3771 
"CD5L WILD-TYPE" "CD5L WILD-TYPE" "CD5L WILD-TYPE" "CD5L WILD-TYPE" 
    TCGA-67-3772     TCGA-67-3773     TCGA-67-3774     TCGA-67-6215 
"CD5L WILD-TYPE" "CD5L WILD-TYPE" "CD5L WILD-TYPE"   "CD5L MUTATED" 
    TCGA-67-6216     TCGA-67-6217     TCGA-71-6725     TCGA-73-4658 
"CD5L WILD-TYPE" "CD5L WILD-TYPE" "CD5L WILD-TYPE" "CD5L WILD-TYPE" 
    TCGA-73-4659     TCGA-73-4662     TCGA-73-4666     TCGA-73-4668 
"CD5L WILD-TYPE" "CD5L WILD-TYPE" "CD5L WILD-TYPE" "CD5L WILD-TYPE" 
    TCGA-73-4670     TCGA-73-4675     TCGA-73-4676     TCGA-73-4677 
"CD5L WILD-TYPE" "CD5L WILD-TYPE" "CD5L WILD-TYPE" "CD5L WILD-TYPE" 
    TCGA-91-6828     TCGA-91-6829     TCGA-91-6831     TCGA-91-6835 
"CD5L WILD-TYPE" "CD5L WILD-TYPE" "CD5L WILD-TYPE" "CD5L WILD-TYPE" 
    TCGA-91-6836 
"CD5L WILD-TYPE" 
    TCGA-05-4249     TCGA-05-4250     TCGA-05-4382     TCGA-05-4384 
"CD5L WILD-TYPE" "CD5L WILD-TYPE"   "CD5L MUTATED" "CD5L WILD-TYPE" 
    TCGA-05-4390     TCGA-05-4396     TCGA-05-4397     TCGA-05-4398 
"CD5L WILD-TYPE"   "CD5L MUTATED"   "CD5L MUTATED" "CD5L WILD-TYPE" 
    TCGA-05-4402     TCGA-05-4405     TCGA-05-4415     TCGA-05-4417 
"CD5L WILD-TYPE" "CD5L WILD-TYPE" "CD5L WILD-TYPE" "CD5L WILD-TYPE" 
    TCGA-05-4418     TCGA-05-4420     TCGA-05-4424     TCGA-05-4426 
"CD5L WILD-TYPE" "CD5L WILD-TYPE" "CD5L WILD-TYPE" "CD5L WILD-TYPE" 
    TCGA-05-4427     TCGA-05-4430     TCGA-05-4432     TCGA-05-4433 
"CD5L WILD-TYPE" "CD5L WILD-TYPE" "CD5L WILD-TYPE" "CD5L WILD-TYPE" 
    TCGA-05-4434     TCGA-05-5420     TCGA-05-5423     TCGA-05-5425 
"CD5L WILD-TYPE" "CD5L WILD-TYPE" "CD5L WILD-TYPE" "CD5L WILD-TYPE" 
    TCGA-05-5429     TCGA-05-5715     TCGA-35-3615     TCGA-35-4122 
"CD5L WILD-TYPE" "CD5L WILD-TYPE" "CD5L WILD-TYPE" "CD5L WILD-TYPE" 
    TCGA-35-4123     TCGA-35-5375     TCGA-38-4625     TCGA-38-4626 
"CD5L WILD-TYPE" "CD5L WILD-TYPE" "CD5L WILD-TYPE" "CD5L WILD-TYPE" 
    TCGA-38-4627     TCGA-38-4628     TCGA-38-4629     TCGA-38-4630 
"CD5L WILD-TYPE" "CD5L WILD-TYPE" "CD5L WILD-TYPE" "CD5L WILD-TYPE" 
    TCGA-38-4631     TCGA-38-4632     TCGA-38-6178     TCGA-44-2655 
"CD5L WILD-TYPE" "CD5L WILD-TYPE" "CD5L WILD-TYPE" "CD5L WILD-TYPE" 
    TCGA-44-2656     TCGA-44-2657     TCGA-44-2659     TCGA-44-2661 
  "CD5L MUTATED" "CD5L WILD-TYPE" "CD5L WILD-TYPE" "CD5L WILD-TYPE" 
    TCGA-44-2662     TCGA-44-2665     TCGA-44-2666     TCGA-44-2668 
"CD5L WILD-TYPE" "CD5L WILD-TYPE" "CD5L WILD-TYPE" "CD5L WILD-TYPE" 
    TCGA-44-3396     TCGA-44-3398     TCGA-44-3918     TCGA-44-3919 
"CD5L WILD-TYPE" "CD5L WILD-TYPE" "CD5L WILD-TYPE" "CD5L WILD-TYPE" 
    TCGA-44-4112     TCGA-44-5643     TCGA-44-5645     TCGA-44-6144 
"CD5L WILD-TYPE" "CD5L WILD-TYPE" "CD5L WILD-TYPE" "CD5L WILD-TYPE" 
    TCGA-44-6145     TCGA-44-6146     TCGA-44-6147     TCGA-44-6148 
"CD5L WILD-TYPE" "CD5L WILD-TYPE" "CD5L WILD-TYPE" "CD5L WILD-TYPE" 
    TCGA-44-6774     TCGA-44-6775     TCGA-44-6776     TCGA-44-6777 
"CD5L WILD-TYPE" "CD5L WILD-TYPE" "CD5L WILD-TYPE" "CD5L WILD-TYPE" 
    TCGA-44-6778     TCGA-44-6779     TCGA-49-4486     TCGA-49-4487 
"CD5L WILD-TYPE" "CD5L WILD-TYPE" "CD5L WILD-TYPE" "CD5L WILD-TYPE" 
    TCGA-49-4488     TCGA-49-4490     TCGA-49-4494     TCGA-49-4501 
  "CD5L MUTATED" "CD5L WILD-TYPE" "CD5L WILD-TYPE" "CD5L WILD-TYPE" 
    TCGA-49-4505     TCGA-49-4506     TCGA-49-4507     TCGA-49-4510 
"CD5L WILD-TYPE" "CD5L WILD-TYPE" "CD5L WILD-TYPE" "CD5L WILD-TYPE" 
    TCGA-49-4512     TCGA-49-4514     TCGA-49-6742     TCGA-49-6743 
"CD5L WILD-TYPE" "CD5L WILD-TYPE" "CD5L WILD-TYPE" "CD5L WILD-TYPE" 
    TCGA-49-6744     TCGA-49-6745     TCGA-50-5044     TCGA-50-5045 
"CD5L WILD-TYPE" "CD5L WILD-TYPE" "CD5L WILD-TYPE" "CD5L WILD-TYPE" 
    TCGA-50-5049     TCGA-50-5051     TCGA-50-5055     TCGA-50-5066 
"CD5L WILD-TYPE" "CD5L WILD-TYPE" "CD5L WILD-TYPE" "CD5L WILD-TYPE" 
    TCGA-50-5068     TCGA-50-5072     TCGA-50-5930     TCGA-50-5931 
"CD5L WILD-TYPE"   "CD5L MUTATED" "CD5L WILD-TYPE" "CD5L WILD-TYPE" 
    TCGA-50-5932     TCGA-50-5933     TCGA-50-5935     TCGA-50-5936 
"CD5L WILD-TYPE"   "CD5L MUTATED" "CD5L WILD-TYPE" "CD5L WILD-TYPE" 
    TCGA-50-5939     TCGA-50-5941     TCGA-50-5942     TCGA-50-5944 
"CD5L WILD-TYPE"   "CD5L MUTATED" "CD5L WILD-TYPE" "CD5L WILD-TYPE" 
    TCGA-50-5946     TCGA-50-6590     TCGA-50-6591     TCGA-50-6592 
"CD5L WILD-TYPE" "CD5L WILD-TYPE" "CD5L WILD-TYPE" "CD5L WILD-TYPE" 
    TCGA-50-6593     TCGA-50-6594     TCGA-50-6595     TCGA-50-6597 
"CD5L WILD-TYPE" "CD5L WILD-TYPE" "CD5L WILD-TYPE" "CD5L WILD-TYPE" 
    TCGA-55-1592     TCGA-55-1594     TCGA-55-1595     TCGA-55-1596 
"CD5L WILD-TYPE" "CD5L WILD-TYPE" "CD5L WILD-TYPE" "CD5L WILD-TYPE" 
    TCGA-55-5899     TCGA-55-6543     TCGA-55-6642     TCGA-55-6712 
"CD5L WILD-TYPE" "CD5L WILD-TYPE" "CD5L WILD-TYPE" "CD5L WILD-TYPE" 
    TCGA-64-1676     TCGA-64-1677     TCGA-64-1678     TCGA-64-1680 
"CD5L WILD-TYPE" "CD5L WILD-TYPE" "CD5L WILD-TYPE" "CD5L WILD-TYPE" 
    TCGA-64-5774     TCGA-64-5775     TCGA-64-5778     TCGA-64-5779 
"CD5L WILD-TYPE" "CD5L WILD-TYPE"   "CD5L MUTATED" "CD5L WILD-TYPE" 
    TCGA-64-5781     TCGA-64-5815     TCGA-67-3770     TCGA-67-3771 
"CD5L WILD-TYPE" "CD5L WILD-TYPE" "CD5L WILD-TYPE" "CD5L WILD-TYPE" 
    TCGA-67-3772     TCGA-67-3773     TCGA-67-3774     TCGA-67-6215 
"CD5L WILD-TYPE" "CD5L WILD-TYPE" "CD5L WILD-TYPE"   "CD5L MUTATED" 
    TCGA-67-6216     TCGA-67-6217     TCGA-71-6725     TCGA-73-4658 
"CD5L WILD-TYPE" "CD5L WILD-TYPE" "CD5L WILD-TYPE" "CD5L WILD-TYPE" 
    TCGA-73-4659     TCGA-73-4662     TCGA-73-4666     TCGA-73-4668 
"CD5L WILD-TYPE" "CD5L WILD-TYPE" "CD5L WILD-TYPE" "CD5L WILD-TYPE" 
    TCGA-73-4670     TCGA-73-4675     TCGA-73-4676     TCGA-73-4677 
"CD5L WILD-TYPE" "CD5L WILD-TYPE" "CD5L WILD-TYPE" "CD5L WILD-TYPE" 
    TCGA-91-6828     TCGA-91-6829     TCGA-91-6831     TCGA-91-6835 
"CD5L WILD-TYPE" "CD5L WILD-TYPE" "CD5L WILD-TYPE" "CD5L WILD-TYPE" 
    TCGA-91-6836 
"CD5L WILD-TYPE" 
    TCGA-05-4249     TCGA-05-4250     TCGA-05-4382     TCGA-05-4384 
"CD5L WILD-TYPE" "CD5L WILD-TYPE"   "CD5L MUTATED" "CD5L WILD-TYPE" 
    TCGA-05-4390     TCGA-05-4396     TCGA-05-4397     TCGA-05-4398 
"CD5L WILD-TYPE"   "CD5L MUTATED"   "CD5L MUTATED" "CD5L WILD-TYPE" 
    TCGA-05-4402     TCGA-05-4405     TCGA-05-4415     TCGA-05-4417 
"CD5L WILD-TYPE" "CD5L WILD-TYPE" "CD5L WILD-TYPE" "CD5L WILD-TYPE" 
    TCGA-05-4418     TCGA-05-4420     TCGA-05-4424     TCGA-05-4426 
"CD5L WILD-TYPE" "CD5L WILD-TYPE" "CD5L WILD-TYPE" "CD5L WILD-TYPE" 
    TCGA-05-4427     TCGA-05-4430     TCGA-05-4432     TCGA-05-4433 
"CD5L WILD-TYPE" "CD5L WILD-TYPE" "CD5L WILD-TYPE" "CD5L WILD-TYPE" 
    TCGA-05-4434     TCGA-05-5420     TCGA-05-5423     TCGA-05-5425 
"CD5L WILD-TYPE" "CD5L WILD-TYPE" "CD5L WILD-TYPE" "CD5L WILD-TYPE" 
    TCGA-05-5429     TCGA-05-5715     TCGA-35-3615     TCGA-35-4122 
"CD5L WILD-TYPE" "CD5L WILD-TYPE" "CD5L WILD-TYPE" "CD5L WILD-TYPE" 
    TCGA-35-4123     TCGA-35-5375     TCGA-38-4625     TCGA-38-4626 
"CD5L WILD-TYPE" "CD5L WILD-TYPE" "CD5L WILD-TYPE" "CD5L WILD-TYPE" 
    TCGA-38-4627     TCGA-38-4628     TCGA-38-4629     TCGA-38-4630 
"CD5L WILD-TYPE" "CD5L WILD-TYPE" "CD5L WILD-TYPE" "CD5L WILD-TYPE" 
    TCGA-38-4631     TCGA-38-4632     TCGA-38-6178     TCGA-44-2655 
"CD5L WILD-TYPE" "CD5L WILD-TYPE" "CD5L WILD-TYPE" "CD5L WILD-TYPE" 
    TCGA-44-2656     TCGA-44-2657     TCGA-44-2659     TCGA-44-2661 
  "CD5L MUTATED" "CD5L WILD-TYPE" "CD5L WILD-TYPE" "CD5L WILD-TYPE" 
    TCGA-44-2662     TCGA-44-2665     TCGA-44-2666     TCGA-44-2668 
"CD5L WILD-TYPE" "CD5L WILD-TYPE" "CD5L WILD-TYPE" "CD5L WILD-TYPE" 
    TCGA-44-3396     TCGA-44-3398     TCGA-44-3918     TCGA-44-3919 
"CD5L WILD-TYPE" "CD5L WILD-TYPE" "CD5L WILD-TYPE" "CD5L WILD-TYPE" 
    TCGA-44-4112     TCGA-44-5643     TCGA-44-5645     TCGA-44-6144 
"CD5L WILD-TYPE" "CD5L WILD-TYPE" "CD5L WILD-TYPE" "CD5L WILD-TYPE" 
    TCGA-44-6145     TCGA-44-6146     TCGA-44-6147     TCGA-44-6148 
"CD5L WILD-TYPE" "CD5L WILD-TYPE" "CD5L WILD-TYPE" "CD5L WILD-TYPE" 
    TCGA-44-6774     TCGA-44-6775     TCGA-44-6776     TCGA-44-6777 
"CD5L WILD-TYPE" "CD5L WILD-TYPE" "CD5L WILD-TYPE" "CD5L WILD-TYPE" 
    TCGA-44-6778     TCGA-44-6779     TCGA-49-4486     TCGA-49-4487 
"CD5L WILD-TYPE" "CD5L WILD-TYPE" "CD5L WILD-TYPE" "CD5L WILD-TYPE" 
    TCGA-49-4488     TCGA-49-4490     TCGA-49-4494     TCGA-49-4501 
  "CD5L MUTATED" "CD5L WILD-TYPE" "CD5L WILD-TYPE" "CD5L WILD-TYPE" 
    TCGA-49-4505     TCGA-49-4506     TCGA-49-4507     TCGA-49-4510 
"CD5L WILD-TYPE" "CD5L WILD-TYPE" "CD5L WILD-TYPE" "CD5L WILD-TYPE" 
    TCGA-49-4512     TCGA-49-4514     TCGA-49-6742     TCGA-49-6743 
"CD5L WILD-TYPE" "CD5L WILD-TYPE" "CD5L WILD-TYPE" "CD5L WILD-TYPE" 
    TCGA-49-6744     TCGA-49-6745     TCGA-50-5044     TCGA-50-5045 
"CD5L WILD-TYPE" "CD5L WILD-TYPE" "CD5L WILD-TYPE" "CD5L WILD-TYPE" 
    TCGA-50-5049     TCGA-50-5051     TCGA-50-5055     TCGA-50-5066 
"CD5L WILD-TYPE" "CD5L WILD-TYPE" "CD5L WILD-TYPE" "CD5L WILD-TYPE" 
    TCGA-50-5068     TCGA-50-5072     TCGA-50-5930     TCGA-50-5931 
"CD5L WILD-TYPE"   "CD5L MUTATED" "CD5L WILD-TYPE" "CD5L WILD-TYPE" 
    TCGA-50-5932     TCGA-50-5933     TCGA-50-5935     TCGA-50-5936 
"CD5L WILD-TYPE"   "CD5L MUTATED" "CD5L WILD-TYPE" "CD5L WILD-TYPE" 
    TCGA-50-5939     TCGA-50-5941     TCGA-50-5942     TCGA-50-5944 
"CD5L WILD-TYPE"   "CD5L MUTATED" "CD5L WILD-TYPE" "CD5L WILD-TYPE" 
    TCGA-50-5946     TCGA-50-6590     TCGA-50-6591     TCGA-50-6592 
"CD5L WILD-TYPE" "CD5L WILD-TYPE" "CD5L WILD-TYPE" "CD5L WILD-TYPE" 
    TCGA-50-6593     TCGA-50-6594     TCGA-50-6595     TCGA-50-6597 
"CD5L WILD-TYPE" "CD5L WILD-TYPE" "CD5L WILD-TYPE" "CD5L WILD-TYPE" 
    TCGA-55-1592     TCGA-55-1594     TCGA-55-1595     TCGA-55-1596 
"CD5L WILD-TYPE" "CD5L WILD-TYPE" "CD5L WILD-TYPE" "CD5L WILD-TYPE" 
    TCGA-55-5899     TCGA-55-6543     TCGA-55-6642     TCGA-55-6712 
"CD5L WILD-TYPE" "CD5L WILD-TYPE" "CD5L WILD-TYPE" "CD5L WILD-TYPE" 
    TCGA-64-1676     TCGA-64-1677     TCGA-64-1678     TCGA-64-1680 
"CD5L WILD-TYPE" "CD5L WILD-TYPE" "CD5L WILD-TYPE" "CD5L WILD-TYPE" 
    TCGA-64-5774     TCGA-64-5775     TCGA-64-5778     TCGA-64-5779 
"CD5L WILD-TYPE" "CD5L WILD-TYPE"   "CD5L MUTATED" "CD5L WILD-TYPE" 
    TCGA-64-5781     TCGA-64-5815     TCGA-67-3770     TCGA-67-3771 
"CD5L WILD-TYPE" "CD5L WILD-TYPE" "CD5L WILD-TYPE" "CD5L WILD-TYPE" 
    TCGA-67-3772     TCGA-67-3773     TCGA-67-3774     TCGA-67-6215 
"CD5L WILD-TYPE" "CD5L WILD-TYPE" "CD5L WILD-TYPE"   "CD5L MUTATED" 
    TCGA-67-6216     TCGA-67-6217     TCGA-71-6725     TCGA-73-4658 
"CD5L WILD-TYPE" "CD5L WILD-TYPE" "CD5L WILD-TYPE" "CD5L WILD-TYPE" 
    TCGA-73-4659     TCGA-73-4662     TCGA-73-4666     TCGA-73-4668 
"CD5L WILD-TYPE" "CD5L WILD-TYPE" "CD5L WILD-TYPE" "CD5L WILD-TYPE" 
    TCGA-73-4670     TCGA-73-4675     TCGA-73-4676     TCGA-73-4677 
"CD5L WILD-TYPE" "CD5L WILD-TYPE" "CD5L WILD-TYPE" "CD5L WILD-TYPE" 
    TCGA-91-6828     TCGA-91-6829     TCGA-91-6831     TCGA-91-6835 
"CD5L WILD-TYPE" "CD5L WILD-TYPE" "CD5L WILD-TYPE" "CD5L WILD-TYPE" 
    TCGA-91-6836 
"CD5L WILD-TYPE" 
[1] "hr=" "1"  
D18V2, continuous
D18V3, binary
[1] "tbl2"
                cls
clus             [,1] [,2]
  CD5L MUTATED      4    8
  CD5L WILD-TYPE   89   71
        clus
vv       CD5L MUTATED CD5L WILD-TYPE
  FEMALE            4             89
  MALE              8             71
D18V4, continuous
[1] "Remove cluster labels:" "CD5L MUTATED"          
clus
  CD5L MUTATED CD5L WILD-TYPE 
             1             11 
    TCGA-35-4122     TCGA-35-4123     TCGA-35-5375     TCGA-64-1677 
"CD5L WILD-TYPE" "CD5L WILD-TYPE" "CD5L WILD-TYPE" "CD5L WILD-TYPE" 
    TCGA-71-6725     TCGA-73-4659     TCGA-73-4662     TCGA-73-4666 
"CD5L WILD-TYPE" "CD5L WILD-TYPE" "CD5L WILD-TYPE" "CD5L WILD-TYPE" 
    TCGA-73-4668     TCGA-73-4676     TCGA-75-5122 
"CD5L WILD-TYPE" "CD5L WILD-TYPE" "CD5L WILD-TYPE" 
D18V5, multiclass
D18V6, multiclass
    clus
vv   CD5L MUTATED CD5L WILD-TYPE
  T1            1             40
  T2            9             99
  T3            0             14
  T4            2              6
D18V7, multiclass
       clus
vv      CD5L MUTATED CD5L WILD-TYPE
  N0               7             88
  N1               2             35
  N2+N3            3             32
D18V8, multiclass
    clus
vv   CD5L MUTATED CD5L WILD-TYPE
  M0           11            126
  M1            0              9
  MX            1             21
D18V9, multiclass
     clus
vv    CD5L MUTATED CD5L WILD-TYPE
  I              7             81
  II             1             32
  III            4             35
  IV             0              9
D18V10, binary
[1] "tbl2"
                cls
clus             [,1] [,2]
  CD5L MUTATED      2   10
  CD5L WILD-TYPE   14  146
     clus
vv    CD5L MUTATED CD5L WILD-TYPE
  NO             2             14
  YES           10            146
D18V11, continuous
D18V12, continuous
D18V13, multiclass
                                             clus
vv                                            CD5L MUTATED CD5L WILD-TYPE
  CURRENT REFORMED SMOKER FOR < OR = 15 YEARS            4             58
  CURRENT REFORMED SMOKER FOR > 15 YEARS                 3             43
  CURRENT SMOKER                                         3             25
  LIFELONG NON-SMOKER                                    1             23
D18V14, continuous

Clustering(19) Variable = GABRB3 MUTATION ANALYSIS
D19V1, survival
                  sevent
clus2               0  1
  GABRB3 MUTATED    3  7
  GABRB3 WILD-TYPE 96 43
  GABRB3 MUTATED GABRB3 WILD-TYPE 
              10              139 
  GABRB3 MUTATED GABRB3 WILD-TYPE 
               7               43 
$`GABRB3 MUTATED`
TCGA-05-4382 TCGA-05-4396 TCGA-38-4631 TCGA-38-4632 TCGA-49-4486 TCGA-50-6590 
       19.92         9.96        11.64        44.61        76.21        42.31 
TCGA-55-1592 TCGA-64-5779 TCGA-73-4666 TCGA-73-4677 
       23.05        16.67        20.28         1.25 

$`GABRB3 WILD-TYPE`
TCGA-05-4249 TCGA-05-4250 TCGA-05-4384 TCGA-05-4390 TCGA-05-4397 TCGA-05-4398 
       38.07         3.98        14.01        37.02        24.03        47.05 
TCGA-05-4402 TCGA-05-4405 TCGA-05-4415 TCGA-05-4417 TCGA-05-4418 TCGA-05-4420 
        8.02        20.05         2.96        14.93         8.98        29.95 
TCGA-05-4424 TCGA-05-4426 TCGA-05-4427 TCGA-05-4430 TCGA-05-4432 TCGA-05-4433 
       30.02        26.01        26.01        25.02        25.02        24.00 
TCGA-05-4434 TCGA-05-5420 TCGA-05-5423 TCGA-05-5425 TCGA-05-5429 TCGA-05-5715 
       15.02         1.02         4.96         2.96         0.99         2.04 
TCGA-35-3615 TCGA-35-4122 TCGA-35-4123 TCGA-35-5375 TCGA-38-4625 TCGA-38-4626 
        0.46         7.36         5.95         8.68        47.61        85.32 
TCGA-38-4627 TCGA-38-4628 TCGA-38-4629 TCGA-38-4630 TCGA-38-6178 TCGA-44-2655 
       37.71        49.02        28.37        35.28         5.19        18.87 
TCGA-44-2656 TCGA-44-2657 TCGA-44-2659 TCGA-44-2661 TCGA-44-2662 TCGA-44-2665 
       19.10        13.15        17.39         3.39        15.78        13.15 
TCGA-44-2666 TCGA-44-2668 TCGA-44-3396 TCGA-44-3398 TCGA-44-3918 TCGA-44-3919 
        3.19         8.09        10.22         8.32         6.44         6.21 
TCGA-44-4112 TCGA-44-5643 TCGA-44-5645 TCGA-44-6144 TCGA-44-6145 TCGA-44-6146 
        4.60         3.48         6.84         0.30         3.35         9.93 
TCGA-44-6147 TCGA-44-6148 TCGA-44-6774 TCGA-44-6775 TCGA-44-6776 TCGA-44-6777 
        7.76         3.12         5.42         2.70        63.72        32.45 
TCGA-44-6778 TCGA-44-6779 TCGA-49-4487 TCGA-49-4488 TCGA-49-4490 TCGA-49-4494 
       36.49        16.41        28.11        28.57        12.66        35.54 
TCGA-49-4501 TCGA-49-4505 TCGA-49-4506 TCGA-49-4507 TCGA-49-4510 TCGA-49-4512 
       46.72        14.07        32.84         8.81        29.46        29.75 
TCGA-49-4514 TCGA-49-6742 TCGA-49-6743 TCGA-49-6744 TCGA-49-6745 TCGA-50-5044 
       43.20        15.02        12.13        12.99         4.93        20.48 
TCGA-50-5045 TCGA-50-5049 TCGA-50-5051 TCGA-50-5055 TCGA-50-5066 TCGA-50-5068 
       71.47        48.82        14.96        25.81         9.76        49.28 
TCGA-50-5072 TCGA-50-5930 TCGA-50-5931 TCGA-50-5932 TCGA-50-5933 TCGA-50-5935 
        8.05         9.27         8.78        35.87        77.88        21.47 
TCGA-50-5936 TCGA-50-5939 TCGA-50-5941 TCGA-50-5942 TCGA-50-5944 TCGA-50-5946 
        8.45        15.12         9.37         4.44        12.26        11.47 
TCGA-50-6591 TCGA-50-6592 TCGA-50-6593 TCGA-50-6594 TCGA-50-6595 TCGA-50-6597 
        3.88        25.51        11.05        12.16         6.21        33.37 
TCGA-55-1594 TCGA-55-1595 TCGA-55-1596 TCGA-55-5899 TCGA-55-6543 TCGA-55-6642 
       38.73        48.62        45.17         2.86         0.07        32.61 
TCGA-55-6712 TCGA-64-1676 TCGA-64-1677 TCGA-64-1678 TCGA-64-1680 TCGA-64-5774 
        0.79        56.81        20.65        39.09        37.02        83.84 
TCGA-64-5775 TCGA-64-5778 TCGA-64-5781 TCGA-64-5815 TCGA-67-3770 TCGA-67-3771 
        0.10        30.44        39.52         7.33         0.99         1.97 
TCGA-67-3772 TCGA-67-3773 TCGA-67-3774 TCGA-67-6215 TCGA-67-6216 TCGA-67-6217 
        0.59         2.04         0.59         0.89         0.69        13.87 
TCGA-71-6725 TCGA-73-4658 TCGA-73-4659 TCGA-73-4662 TCGA-73-4668 TCGA-73-4670 
        2.01        52.57        23.38        29.95        15.35         0.46 
TCGA-73-4675 TCGA-73-4676 TCGA-91-6828 TCGA-91-6829 TCGA-91-6831 TCGA-91-6835 
        1.32         4.01         1.22        41.33         1.28         1.15 
TCGA-91-6836 
        0.36 

  GABRB3 MUTATED GABRB3 WILD-TYPE 
            1.25             0.07 
  GABRB3 MUTATED GABRB3 WILD-TYPE 
           76.21            85.32 
  GABRB3 MUTATED GABRB3 WILD-TYPE 
           20.10            13.15 
[1] "1.2 - 76.2 (20.1)" "0.1 - 85.3 (13.2)"
      TCGA-05-4249       TCGA-05-4250       TCGA-05-4382       TCGA-05-4384 
"GABRB3 WILD-TYPE" "GABRB3 WILD-TYPE"   "GABRB3 MUTATED" "GABRB3 WILD-TYPE" 
      TCGA-05-4390       TCGA-05-4396       TCGA-05-4397       TCGA-05-4398 
"GABRB3 WILD-TYPE"   "GABRB3 MUTATED" "GABRB3 WILD-TYPE" "GABRB3 WILD-TYPE" 
      TCGA-05-4402       TCGA-05-4405       TCGA-05-4415       TCGA-05-4417 
"GABRB3 WILD-TYPE" "GABRB3 WILD-TYPE" "GABRB3 WILD-TYPE" "GABRB3 WILD-TYPE" 
      TCGA-05-4418       TCGA-05-4420       TCGA-05-4424       TCGA-05-4426 
"GABRB3 WILD-TYPE" "GABRB3 WILD-TYPE" "GABRB3 WILD-TYPE" "GABRB3 WILD-TYPE" 
      TCGA-05-4427       TCGA-05-4430       TCGA-05-4432       TCGA-05-4433 
"GABRB3 WILD-TYPE" "GABRB3 WILD-TYPE" "GABRB3 WILD-TYPE" "GABRB3 WILD-TYPE" 
      TCGA-05-4434       TCGA-05-5420       TCGA-05-5423       TCGA-05-5425 
"GABRB3 WILD-TYPE" "GABRB3 WILD-TYPE" "GABRB3 WILD-TYPE" "GABRB3 WILD-TYPE" 
      TCGA-05-5429       TCGA-05-5715       TCGA-35-3615       TCGA-35-4122 
"GABRB3 WILD-TYPE" "GABRB3 WILD-TYPE" "GABRB3 WILD-TYPE" "GABRB3 WILD-TYPE" 
      TCGA-35-4123       TCGA-35-5375       TCGA-38-4625       TCGA-38-4626 
"GABRB3 WILD-TYPE" "GABRB3 WILD-TYPE" "GABRB3 WILD-TYPE" "GABRB3 WILD-TYPE" 
      TCGA-38-4627       TCGA-38-4628       TCGA-38-4629       TCGA-38-4630 
"GABRB3 WILD-TYPE" "GABRB3 WILD-TYPE" "GABRB3 WILD-TYPE" "GABRB3 WILD-TYPE" 
      TCGA-38-4631       TCGA-38-4632       TCGA-38-6178       TCGA-44-2655 
  "GABRB3 MUTATED"   "GABRB3 MUTATED" "GABRB3 WILD-TYPE" "GABRB3 WILD-TYPE" 
      TCGA-44-2656       TCGA-44-2657       TCGA-44-2659       TCGA-44-2661 
"GABRB3 WILD-TYPE" "GABRB3 WILD-TYPE" "GABRB3 WILD-TYPE" "GABRB3 WILD-TYPE" 
      TCGA-44-2662       TCGA-44-2665       TCGA-44-2666       TCGA-44-2668 
"GABRB3 WILD-TYPE" "GABRB3 WILD-TYPE" "GABRB3 WILD-TYPE" "GABRB3 WILD-TYPE" 
      TCGA-44-3396       TCGA-44-3398       TCGA-44-3918       TCGA-44-3919 
"GABRB3 WILD-TYPE" "GABRB3 WILD-TYPE" "GABRB3 WILD-TYPE" "GABRB3 WILD-TYPE" 
      TCGA-44-4112       TCGA-44-5643       TCGA-44-5645       TCGA-44-6144 
"GABRB3 WILD-TYPE" "GABRB3 WILD-TYPE" "GABRB3 WILD-TYPE" "GABRB3 WILD-TYPE" 
      TCGA-44-6145       TCGA-44-6146       TCGA-44-6147       TCGA-44-6148 
"GABRB3 WILD-TYPE" "GABRB3 WILD-TYPE" "GABRB3 WILD-TYPE" "GABRB3 WILD-TYPE" 
      TCGA-44-6774       TCGA-44-6775       TCGA-44-6776       TCGA-44-6777 
"GABRB3 WILD-TYPE" "GABRB3 WILD-TYPE" "GABRB3 WILD-TYPE" "GABRB3 WILD-TYPE" 
      TCGA-44-6778       TCGA-44-6779       TCGA-49-4486       TCGA-49-4487 
"GABRB3 WILD-TYPE" "GABRB3 WILD-TYPE"   "GABRB3 MUTATED" "GABRB3 WILD-TYPE" 
      TCGA-49-4488       TCGA-49-4490       TCGA-49-4494       TCGA-49-4501 
"GABRB3 WILD-TYPE" "GABRB3 WILD-TYPE" "GABRB3 WILD-TYPE" "GABRB3 WILD-TYPE" 
      TCGA-49-4505       TCGA-49-4506       TCGA-49-4507       TCGA-49-4510 
"GABRB3 WILD-TYPE" "GABRB3 WILD-TYPE" "GABRB3 WILD-TYPE" "GABRB3 WILD-TYPE" 
      TCGA-49-4512       TCGA-49-4514       TCGA-49-6742       TCGA-49-6743 
"GABRB3 WILD-TYPE" "GABRB3 WILD-TYPE" "GABRB3 WILD-TYPE" "GABRB3 WILD-TYPE" 
      TCGA-49-6744       TCGA-49-6745       TCGA-50-5044       TCGA-50-5045 
"GABRB3 WILD-TYPE" "GABRB3 WILD-TYPE" "GABRB3 WILD-TYPE" "GABRB3 WILD-TYPE" 
      TCGA-50-5049       TCGA-50-5051       TCGA-50-5055       TCGA-50-5066 
"GABRB3 WILD-TYPE" "GABRB3 WILD-TYPE" "GABRB3 WILD-TYPE" "GABRB3 WILD-TYPE" 
      TCGA-50-5068       TCGA-50-5072       TCGA-50-5930       TCGA-50-5931 
"GABRB3 WILD-TYPE" "GABRB3 WILD-TYPE" "GABRB3 WILD-TYPE" "GABRB3 WILD-TYPE" 
      TCGA-50-5932       TCGA-50-5933       TCGA-50-5935       TCGA-50-5936 
"GABRB3 WILD-TYPE" "GABRB3 WILD-TYPE" "GABRB3 WILD-TYPE" "GABRB3 WILD-TYPE" 
      TCGA-50-5939       TCGA-50-5941       TCGA-50-5942       TCGA-50-5944 
"GABRB3 WILD-TYPE" "GABRB3 WILD-TYPE" "GABRB3 WILD-TYPE" "GABRB3 WILD-TYPE" 
      TCGA-50-5946       TCGA-50-6590       TCGA-50-6591       TCGA-50-6592 
"GABRB3 WILD-TYPE"   "GABRB3 MUTATED" "GABRB3 WILD-TYPE" "GABRB3 WILD-TYPE" 
      TCGA-50-6593       TCGA-50-6594       TCGA-50-6595       TCGA-50-6597 
"GABRB3 WILD-TYPE" "GABRB3 WILD-TYPE" "GABRB3 WILD-TYPE" "GABRB3 WILD-TYPE" 
      TCGA-55-1592       TCGA-55-1594       TCGA-55-1595       TCGA-55-1596 
  "GABRB3 MUTATED" "GABRB3 WILD-TYPE" "GABRB3 WILD-TYPE" "GABRB3 WILD-TYPE" 
      TCGA-55-5899       TCGA-55-6543       TCGA-55-6642       TCGA-55-6712 
"GABRB3 WILD-TYPE" "GABRB3 WILD-TYPE" "GABRB3 WILD-TYPE" "GABRB3 WILD-TYPE" 
      TCGA-64-1676       TCGA-64-1677       TCGA-64-1678       TCGA-64-1680 
"GABRB3 WILD-TYPE" "GABRB3 WILD-TYPE" "GABRB3 WILD-TYPE" "GABRB3 WILD-TYPE" 
      TCGA-64-5774       TCGA-64-5775       TCGA-64-5778       TCGA-64-5779 
"GABRB3 WILD-TYPE" "GABRB3 WILD-TYPE" "GABRB3 WILD-TYPE"   "GABRB3 MUTATED" 
      TCGA-64-5781       TCGA-64-5815       TCGA-67-3770       TCGA-67-3771 
"GABRB3 WILD-TYPE" "GABRB3 WILD-TYPE" "GABRB3 WILD-TYPE" "GABRB3 WILD-TYPE" 
      TCGA-67-3772       TCGA-67-3773       TCGA-67-3774       TCGA-67-6215 
"GABRB3 WILD-TYPE" "GABRB3 WILD-TYPE" "GABRB3 WILD-TYPE" "GABRB3 WILD-TYPE" 
      TCGA-67-6216       TCGA-67-6217       TCGA-71-6725       TCGA-73-4658 
"GABRB3 WILD-TYPE" "GABRB3 WILD-TYPE" "GABRB3 WILD-TYPE" "GABRB3 WILD-TYPE" 
      TCGA-73-4659       TCGA-73-4662       TCGA-73-4666       TCGA-73-4668 
"GABRB3 WILD-TYPE" "GABRB3 WILD-TYPE"   "GABRB3 MUTATED" "GABRB3 WILD-TYPE" 
      TCGA-73-4670       TCGA-73-4675       TCGA-73-4676       TCGA-73-4677 
"GABRB3 WILD-TYPE" "GABRB3 WILD-TYPE" "GABRB3 WILD-TYPE"   "GABRB3 MUTATED" 
      TCGA-91-6828       TCGA-91-6829       TCGA-91-6831       TCGA-91-6835 
"GABRB3 WILD-TYPE" "GABRB3 WILD-TYPE" "GABRB3 WILD-TYPE" "GABRB3 WILD-TYPE" 
      TCGA-91-6836 
"GABRB3 WILD-TYPE" 
      TCGA-05-4249       TCGA-05-4250       TCGA-05-4382       TCGA-05-4384 
"GABRB3 WILD-TYPE" "GABRB3 WILD-TYPE"   "GABRB3 MUTATED" "GABRB3 WILD-TYPE" 
      TCGA-05-4390       TCGA-05-4396       TCGA-05-4397       TCGA-05-4398 
"GABRB3 WILD-TYPE"   "GABRB3 MUTATED" "GABRB3 WILD-TYPE" "GABRB3 WILD-TYPE" 
      TCGA-05-4402       TCGA-05-4405       TCGA-05-4415       TCGA-05-4417 
"GABRB3 WILD-TYPE" "GABRB3 WILD-TYPE" "GABRB3 WILD-TYPE" "GABRB3 WILD-TYPE" 
      TCGA-05-4418       TCGA-05-4420       TCGA-05-4424       TCGA-05-4426 
"GABRB3 WILD-TYPE" "GABRB3 WILD-TYPE" "GABRB3 WILD-TYPE" "GABRB3 WILD-TYPE" 
      TCGA-05-4427       TCGA-05-4430       TCGA-05-4432       TCGA-05-4433 
"GABRB3 WILD-TYPE" "GABRB3 WILD-TYPE" "GABRB3 WILD-TYPE" "GABRB3 WILD-TYPE" 
      TCGA-05-4434       TCGA-05-5420       TCGA-05-5423       TCGA-05-5425 
"GABRB3 WILD-TYPE" "GABRB3 WILD-TYPE" "GABRB3 WILD-TYPE" "GABRB3 WILD-TYPE" 
      TCGA-05-5429       TCGA-05-5715       TCGA-35-3615       TCGA-35-4122 
"GABRB3 WILD-TYPE" "GABRB3 WILD-TYPE" "GABRB3 WILD-TYPE" "GABRB3 WILD-TYPE" 
      TCGA-35-4123       TCGA-35-5375       TCGA-38-4625       TCGA-38-4626 
"GABRB3 WILD-TYPE" "GABRB3 WILD-TYPE" "GABRB3 WILD-TYPE" "GABRB3 WILD-TYPE" 
      TCGA-38-4627       TCGA-38-4628       TCGA-38-4629       TCGA-38-4630 
"GABRB3 WILD-TYPE" "GABRB3 WILD-TYPE" "GABRB3 WILD-TYPE" "GABRB3 WILD-TYPE" 
      TCGA-38-4631       TCGA-38-4632       TCGA-38-6178       TCGA-44-2655 
  "GABRB3 MUTATED"   "GABRB3 MUTATED" "GABRB3 WILD-TYPE" "GABRB3 WILD-TYPE" 
      TCGA-44-2656       TCGA-44-2657       TCGA-44-2659       TCGA-44-2661 
"GABRB3 WILD-TYPE" "GABRB3 WILD-TYPE" "GABRB3 WILD-TYPE" "GABRB3 WILD-TYPE" 
      TCGA-44-2662       TCGA-44-2665       TCGA-44-2666       TCGA-44-2668 
"GABRB3 WILD-TYPE" "GABRB3 WILD-TYPE" "GABRB3 WILD-TYPE" "GABRB3 WILD-TYPE" 
      TCGA-44-3396       TCGA-44-3398       TCGA-44-3918       TCGA-44-3919 
"GABRB3 WILD-TYPE" "GABRB3 WILD-TYPE" "GABRB3 WILD-TYPE" "GABRB3 WILD-TYPE" 
      TCGA-44-4112       TCGA-44-5643       TCGA-44-5645       TCGA-44-6144 
"GABRB3 WILD-TYPE" "GABRB3 WILD-TYPE" "GABRB3 WILD-TYPE" "GABRB3 WILD-TYPE" 
      TCGA-44-6145       TCGA-44-6146       TCGA-44-6147       TCGA-44-6148 
"GABRB3 WILD-TYPE" "GABRB3 WILD-TYPE" "GABRB3 WILD-TYPE" "GABRB3 WILD-TYPE" 
      TCGA-44-6774       TCGA-44-6775       TCGA-44-6776       TCGA-44-6777 
"GABRB3 WILD-TYPE" "GABRB3 WILD-TYPE" "GABRB3 WILD-TYPE" "GABRB3 WILD-TYPE" 
      TCGA-44-6778       TCGA-44-6779       TCGA-49-4486       TCGA-49-4487 
"GABRB3 WILD-TYPE" "GABRB3 WILD-TYPE"   "GABRB3 MUTATED" "GABRB3 WILD-TYPE" 
      TCGA-49-4488       TCGA-49-4490       TCGA-49-4494       TCGA-49-4501 
"GABRB3 WILD-TYPE" "GABRB3 WILD-TYPE" "GABRB3 WILD-TYPE" "GABRB3 WILD-TYPE" 
      TCGA-49-4505       TCGA-49-4506       TCGA-49-4507       TCGA-49-4510 
"GABRB3 WILD-TYPE" "GABRB3 WILD-TYPE" "GABRB3 WILD-TYPE" "GABRB3 WILD-TYPE" 
      TCGA-49-4512       TCGA-49-4514       TCGA-49-6742       TCGA-49-6743 
"GABRB3 WILD-TYPE" "GABRB3 WILD-TYPE" "GABRB3 WILD-TYPE" "GABRB3 WILD-TYPE" 
      TCGA-49-6744       TCGA-49-6745       TCGA-50-5044       TCGA-50-5045 
"GABRB3 WILD-TYPE" "GABRB3 WILD-TYPE" "GABRB3 WILD-TYPE" "GABRB3 WILD-TYPE" 
      TCGA-50-5049       TCGA-50-5051       TCGA-50-5055       TCGA-50-5066 
"GABRB3 WILD-TYPE" "GABRB3 WILD-TYPE" "GABRB3 WILD-TYPE" "GABRB3 WILD-TYPE" 
      TCGA-50-5068       TCGA-50-5072       TCGA-50-5930       TCGA-50-5931 
"GABRB3 WILD-TYPE" "GABRB3 WILD-TYPE" "GABRB3 WILD-TYPE" "GABRB3 WILD-TYPE" 
      TCGA-50-5932       TCGA-50-5933       TCGA-50-5935       TCGA-50-5936 
"GABRB3 WILD-TYPE" "GABRB3 WILD-TYPE" "GABRB3 WILD-TYPE" "GABRB3 WILD-TYPE" 
      TCGA-50-5939       TCGA-50-5941       TCGA-50-5942       TCGA-50-5944 
"GABRB3 WILD-TYPE" "GABRB3 WILD-TYPE" "GABRB3 WILD-TYPE" "GABRB3 WILD-TYPE" 
      TCGA-50-5946       TCGA-50-6590       TCGA-50-6591       TCGA-50-6592 
"GABRB3 WILD-TYPE"   "GABRB3 MUTATED" "GABRB3 WILD-TYPE" "GABRB3 WILD-TYPE" 
      TCGA-50-6593       TCGA-50-6594       TCGA-50-6595       TCGA-50-6597 
"GABRB3 WILD-TYPE" "GABRB3 WILD-TYPE" "GABRB3 WILD-TYPE" "GABRB3 WILD-TYPE" 
      TCGA-55-1592       TCGA-55-1594       TCGA-55-1595       TCGA-55-1596 
  "GABRB3 MUTATED" "GABRB3 WILD-TYPE" "GABRB3 WILD-TYPE" "GABRB3 WILD-TYPE" 
      TCGA-55-5899       TCGA-55-6543       TCGA-55-6642       TCGA-55-6712 
"GABRB3 WILD-TYPE" "GABRB3 WILD-TYPE" "GABRB3 WILD-TYPE" "GABRB3 WILD-TYPE" 
      TCGA-64-1676       TCGA-64-1677       TCGA-64-1678       TCGA-64-1680 
"GABRB3 WILD-TYPE" "GABRB3 WILD-TYPE" "GABRB3 WILD-TYPE" "GABRB3 WILD-TYPE" 
      TCGA-64-5774       TCGA-64-5775       TCGA-64-5778       TCGA-64-5779 
"GABRB3 WILD-TYPE" "GABRB3 WILD-TYPE" "GABRB3 WILD-TYPE"   "GABRB3 MUTATED" 
      TCGA-64-5781       TCGA-64-5815       TCGA-67-3770       TCGA-67-3771 
"GABRB3 WILD-TYPE" "GABRB3 WILD-TYPE" "GABRB3 WILD-TYPE" "GABRB3 WILD-TYPE" 
      TCGA-67-3772       TCGA-67-3773       TCGA-67-3774       TCGA-67-6215 
"GABRB3 WILD-TYPE" "GABRB3 WILD-TYPE" "GABRB3 WILD-TYPE" "GABRB3 WILD-TYPE" 
      TCGA-67-6216       TCGA-67-6217       TCGA-71-6725       TCGA-73-4658 
"GABRB3 WILD-TYPE" "GABRB3 WILD-TYPE" "GABRB3 WILD-TYPE" "GABRB3 WILD-TYPE" 
      TCGA-73-4659       TCGA-73-4662       TCGA-73-4666       TCGA-73-4668 
"GABRB3 WILD-TYPE" "GABRB3 WILD-TYPE"   "GABRB3 MUTATED" "GABRB3 WILD-TYPE" 
      TCGA-73-4670       TCGA-73-4675       TCGA-73-4676       TCGA-73-4677 
"GABRB3 WILD-TYPE" "GABRB3 WILD-TYPE" "GABRB3 WILD-TYPE"   "GABRB3 MUTATED" 
      TCGA-91-6828       TCGA-91-6829       TCGA-91-6831       TCGA-91-6835 
"GABRB3 WILD-TYPE" "GABRB3 WILD-TYPE" "GABRB3 WILD-TYPE" "GABRB3 WILD-TYPE" 
      TCGA-91-6836 
"GABRB3 WILD-TYPE" 
      TCGA-05-4249       TCGA-05-4250       TCGA-05-4382       TCGA-05-4384 
"GABRB3 WILD-TYPE" "GABRB3 WILD-TYPE"   "GABRB3 MUTATED" "GABRB3 WILD-TYPE" 
      TCGA-05-4390       TCGA-05-4396       TCGA-05-4397       TCGA-05-4398 
"GABRB3 WILD-TYPE"   "GABRB3 MUTATED" "GABRB3 WILD-TYPE" "GABRB3 WILD-TYPE" 
      TCGA-05-4402       TCGA-05-4405       TCGA-05-4415       TCGA-05-4417 
"GABRB3 WILD-TYPE" "GABRB3 WILD-TYPE" "GABRB3 WILD-TYPE" "GABRB3 WILD-TYPE" 
      TCGA-05-4418       TCGA-05-4420       TCGA-05-4424       TCGA-05-4426 
"GABRB3 WILD-TYPE" "GABRB3 WILD-TYPE" "GABRB3 WILD-TYPE" "GABRB3 WILD-TYPE" 
      TCGA-05-4427       TCGA-05-4430       TCGA-05-4432       TCGA-05-4433 
"GABRB3 WILD-TYPE" "GABRB3 WILD-TYPE" "GABRB3 WILD-TYPE" "GABRB3 WILD-TYPE" 
      TCGA-05-4434       TCGA-05-5420       TCGA-05-5423       TCGA-05-5425 
"GABRB3 WILD-TYPE" "GABRB3 WILD-TYPE" "GABRB3 WILD-TYPE" "GABRB3 WILD-TYPE" 
      TCGA-05-5429       TCGA-05-5715       TCGA-35-3615       TCGA-35-4122 
"GABRB3 WILD-TYPE" "GABRB3 WILD-TYPE" "GABRB3 WILD-TYPE" "GABRB3 WILD-TYPE" 
      TCGA-35-4123       TCGA-35-5375       TCGA-38-4625       TCGA-38-4626 
"GABRB3 WILD-TYPE" "GABRB3 WILD-TYPE" "GABRB3 WILD-TYPE" "GABRB3 WILD-TYPE" 
      TCGA-38-4627       TCGA-38-4628       TCGA-38-4629       TCGA-38-4630 
"GABRB3 WILD-TYPE" "GABRB3 WILD-TYPE" "GABRB3 WILD-TYPE" "GABRB3 WILD-TYPE" 
      TCGA-38-4631       TCGA-38-4632       TCGA-38-6178       TCGA-44-2655 
  "GABRB3 MUTATED"   "GABRB3 MUTATED" "GABRB3 WILD-TYPE" "GABRB3 WILD-TYPE" 
      TCGA-44-2656       TCGA-44-2657       TCGA-44-2659       TCGA-44-2661 
"GABRB3 WILD-TYPE" "GABRB3 WILD-TYPE" "GABRB3 WILD-TYPE" "GABRB3 WILD-TYPE" 
      TCGA-44-2662       TCGA-44-2665       TCGA-44-2666       TCGA-44-2668 
"GABRB3 WILD-TYPE" "GABRB3 WILD-TYPE" "GABRB3 WILD-TYPE" "GABRB3 WILD-TYPE" 
      TCGA-44-3396       TCGA-44-3398       TCGA-44-3918       TCGA-44-3919 
"GABRB3 WILD-TYPE" "GABRB3 WILD-TYPE" "GABRB3 WILD-TYPE" "GABRB3 WILD-TYPE" 
      TCGA-44-4112       TCGA-44-5643       TCGA-44-5645       TCGA-44-6144 
"GABRB3 WILD-TYPE" "GABRB3 WILD-TYPE" "GABRB3 WILD-TYPE" "GABRB3 WILD-TYPE" 
      TCGA-44-6145       TCGA-44-6146       TCGA-44-6147       TCGA-44-6148 
"GABRB3 WILD-TYPE" "GABRB3 WILD-TYPE" "GABRB3 WILD-TYPE" "GABRB3 WILD-TYPE" 
      TCGA-44-6774       TCGA-44-6775       TCGA-44-6776       TCGA-44-6777 
"GABRB3 WILD-TYPE" "GABRB3 WILD-TYPE" "GABRB3 WILD-TYPE" "GABRB3 WILD-TYPE" 
      TCGA-44-6778       TCGA-44-6779       TCGA-49-4486       TCGA-49-4487 
"GABRB3 WILD-TYPE" "GABRB3 WILD-TYPE"   "GABRB3 MUTATED" "GABRB3 WILD-TYPE" 
      TCGA-49-4488       TCGA-49-4490       TCGA-49-4494       TCGA-49-4501 
"GABRB3 WILD-TYPE" "GABRB3 WILD-TYPE" "GABRB3 WILD-TYPE" "GABRB3 WILD-TYPE" 
      TCGA-49-4505       TCGA-49-4506       TCGA-49-4507       TCGA-49-4510 
"GABRB3 WILD-TYPE" "GABRB3 WILD-TYPE" "GABRB3 WILD-TYPE" "GABRB3 WILD-TYPE" 
      TCGA-49-4512       TCGA-49-4514       TCGA-49-6742       TCGA-49-6743 
"GABRB3 WILD-TYPE" "GABRB3 WILD-TYPE" "GABRB3 WILD-TYPE" "GABRB3 WILD-TYPE" 
      TCGA-49-6744       TCGA-49-6745       TCGA-50-5044       TCGA-50-5045 
"GABRB3 WILD-TYPE" "GABRB3 WILD-TYPE" "GABRB3 WILD-TYPE" "GABRB3 WILD-TYPE" 
      TCGA-50-5049       TCGA-50-5051       TCGA-50-5055       TCGA-50-5066 
"GABRB3 WILD-TYPE" "GABRB3 WILD-TYPE" "GABRB3 WILD-TYPE" "GABRB3 WILD-TYPE" 
      TCGA-50-5068       TCGA-50-5072       TCGA-50-5930       TCGA-50-5931 
"GABRB3 WILD-TYPE" "GABRB3 WILD-TYPE" "GABRB3 WILD-TYPE" "GABRB3 WILD-TYPE" 
      TCGA-50-5932       TCGA-50-5933       TCGA-50-5935       TCGA-50-5936 
"GABRB3 WILD-TYPE" "GABRB3 WILD-TYPE" "GABRB3 WILD-TYPE" "GABRB3 WILD-TYPE" 
      TCGA-50-5939       TCGA-50-5941       TCGA-50-5942       TCGA-50-5944 
"GABRB3 WILD-TYPE" "GABRB3 WILD-TYPE" "GABRB3 WILD-TYPE" "GABRB3 WILD-TYPE" 
      TCGA-50-5946       TCGA-50-6590       TCGA-50-6591       TCGA-50-6592 
"GABRB3 WILD-TYPE"   "GABRB3 MUTATED" "GABRB3 WILD-TYPE" "GABRB3 WILD-TYPE" 
      TCGA-50-6593       TCGA-50-6594       TCGA-50-6595       TCGA-50-6597 
"GABRB3 WILD-TYPE" "GABRB3 WILD-TYPE" "GABRB3 WILD-TYPE" "GABRB3 WILD-TYPE" 
      TCGA-55-1592       TCGA-55-1594       TCGA-55-1595       TCGA-55-1596 
  "GABRB3 MUTATED" "GABRB3 WILD-TYPE" "GABRB3 WILD-TYPE" "GABRB3 WILD-TYPE" 
      TCGA-55-5899       TCGA-55-6543       TCGA-55-6642       TCGA-55-6712 
"GABRB3 WILD-TYPE" "GABRB3 WILD-TYPE" "GABRB3 WILD-TYPE" "GABRB3 WILD-TYPE" 
      TCGA-64-1676       TCGA-64-1677       TCGA-64-1678       TCGA-64-1680 
"GABRB3 WILD-TYPE" "GABRB3 WILD-TYPE" "GABRB3 WILD-TYPE" "GABRB3 WILD-TYPE" 
      TCGA-64-5774       TCGA-64-5775       TCGA-64-5778       TCGA-64-5779 
"GABRB3 WILD-TYPE" "GABRB3 WILD-TYPE" "GABRB3 WILD-TYPE"   "GABRB3 MUTATED" 
      TCGA-64-5781       TCGA-64-5815       TCGA-67-3770       TCGA-67-3771 
"GABRB3 WILD-TYPE" "GABRB3 WILD-TYPE" "GABRB3 WILD-TYPE" "GABRB3 WILD-TYPE" 
      TCGA-67-3772       TCGA-67-3773       TCGA-67-3774       TCGA-67-6215 
"GABRB3 WILD-TYPE" "GABRB3 WILD-TYPE" "GABRB3 WILD-TYPE" "GABRB3 WILD-TYPE" 
      TCGA-67-6216       TCGA-67-6217       TCGA-71-6725       TCGA-73-4658 
"GABRB3 WILD-TYPE" "GABRB3 WILD-TYPE" "GABRB3 WILD-TYPE" "GABRB3 WILD-TYPE" 
      TCGA-73-4659       TCGA-73-4662       TCGA-73-4666       TCGA-73-4668 
"GABRB3 WILD-TYPE" "GABRB3 WILD-TYPE"   "GABRB3 MUTATED" "GABRB3 WILD-TYPE" 
      TCGA-73-4670       TCGA-73-4675       TCGA-73-4676       TCGA-73-4677 
"GABRB3 WILD-TYPE" "GABRB3 WILD-TYPE" "GABRB3 WILD-TYPE"   "GABRB3 MUTATED" 
      TCGA-91-6828       TCGA-91-6829       TCGA-91-6831       TCGA-91-6835 
"GABRB3 WILD-TYPE" "GABRB3 WILD-TYPE" "GABRB3 WILD-TYPE" "GABRB3 WILD-TYPE" 
      TCGA-91-6836 
"GABRB3 WILD-TYPE" 
[1] "hr=" "1.6"
D19V2, continuous
D19V3, binary
[1] "tbl2"
                  cls
clus               [,1] [,2]
  GABRB3 MUTATED      4    7
  GABRB3 WILD-TYPE   89   72
        clus
vv       GABRB3 MUTATED GABRB3 WILD-TYPE
  FEMALE              4               89
  MALE                7               72
D19V4, continuous
[1] "Remove cluster labels:" "GABRB3 MUTATED"        
clus
  GABRB3 MUTATED GABRB3 WILD-TYPE 
               1               11 
      TCGA-35-4122       TCGA-35-4123       TCGA-35-5375       TCGA-64-1677 
"GABRB3 WILD-TYPE" "GABRB3 WILD-TYPE" "GABRB3 WILD-TYPE" "GABRB3 WILD-TYPE" 
      TCGA-64-5778       TCGA-71-6725       TCGA-73-4659       TCGA-73-4662 
"GABRB3 WILD-TYPE" "GABRB3 WILD-TYPE" "GABRB3 WILD-TYPE" "GABRB3 WILD-TYPE" 
      TCGA-73-4668       TCGA-73-4676       TCGA-75-5122 
"GABRB3 WILD-TYPE" "GABRB3 WILD-TYPE" "GABRB3 WILD-TYPE" 
D19V5, multiclass
D19V6, multiclass
    clus
vv   GABRB3 MUTATED GABRB3 WILD-TYPE
  T1              2               39
  T2              8              100
  T3              0               14
  T4              1                7
D19V7, multiclass
       clus
vv      GABRB3 MUTATED GABRB3 WILD-TYPE
  N0                 8               87
  N1                 2               35
  N2+N3              1               34
D19V8, multiclass
    clus
vv   GABRB3 MUTATED GABRB3 WILD-TYPE
  M0              9              128
  M1              2                7
  MX              0               22
D19V9, multiclass
     clus
vv    GABRB3 MUTATED GABRB3 WILD-TYPE
  I                7               81
  II               0               33
  III              2               37
  IV               2                7
D19V10, binary
[1] "tbl2"
                  cls
clus               [,1] [,2]
  GABRB3 MUTATED      1   10
  GABRB3 WILD-TYPE   15  146
     clus
vv    GABRB3 MUTATED GABRB3 WILD-TYPE
  NO               1               15
  YES             10              146
D19V11, continuous
D19V12, continuous
D19V13, multiclass
                                             clus
vv                                            GABRB3 MUTATED GABRB3 WILD-TYPE
  CURRENT REFORMED SMOKER FOR < OR = 15 YEARS              7               55
  CURRENT REFORMED SMOKER FOR > 15 YEARS                   3               43
  CURRENT SMOKER                                           1               27
  LIFELONG NON-SMOKER                                      0               24
D19V14, continuous

Clustering(20) Variable = OR4C16 MUTATION ANALYSIS
D20V1, survival
                  sevent
clus2               0  1
  OR4C16 MUTATED    9  4
  OR4C16 WILD-TYPE 90 46
  OR4C16 MUTATED OR4C16 WILD-TYPE 
              13              136 
  OR4C16 MUTATED OR4C16 WILD-TYPE 
               4               46 
$`OR4C16 MUTATED`
TCGA-05-4382 TCGA-05-4396 TCGA-49-4487 TCGA-49-6743 TCGA-50-5049 TCGA-50-5066 
       19.92         9.96        28.11        12.13        48.82         9.76 
TCGA-50-5941 TCGA-50-6592 TCGA-50-6594 TCGA-55-1595 TCGA-64-5781 TCGA-71-6725 
        9.37        25.51        12.16        48.62        39.52         2.01 
TCGA-91-6831 
        1.28 

$`OR4C16 WILD-TYPE`
TCGA-05-4249 TCGA-05-4250 TCGA-05-4384 TCGA-05-4390 TCGA-05-4397 TCGA-05-4398 
       38.07         3.98        14.01        37.02        24.03        47.05 
TCGA-05-4402 TCGA-05-4405 TCGA-05-4415 TCGA-05-4417 TCGA-05-4418 TCGA-05-4420 
        8.02        20.05         2.96        14.93         8.98        29.95 
TCGA-05-4424 TCGA-05-4426 TCGA-05-4427 TCGA-05-4430 TCGA-05-4432 TCGA-05-4433 
       30.02        26.01        26.01        25.02        25.02        24.00 
TCGA-05-4434 TCGA-05-5420 TCGA-05-5423 TCGA-05-5425 TCGA-05-5429 TCGA-05-5715 
       15.02         1.02         4.96         2.96         0.99         2.04 
TCGA-35-3615 TCGA-35-4122 TCGA-35-4123 TCGA-35-5375 TCGA-38-4625 TCGA-38-4626 
        0.46         7.36         5.95         8.68        47.61        85.32 
TCGA-38-4627 TCGA-38-4628 TCGA-38-4629 TCGA-38-4630 TCGA-38-4631 TCGA-38-4632 
       37.71        49.02        28.37        35.28        11.64        44.61 
TCGA-38-6178 TCGA-44-2655 TCGA-44-2656 TCGA-44-2657 TCGA-44-2659 TCGA-44-2661 
        5.19        18.87        19.10        13.15        17.39         3.39 
TCGA-44-2662 TCGA-44-2665 TCGA-44-2666 TCGA-44-2668 TCGA-44-3396 TCGA-44-3398 
       15.78        13.15         3.19         8.09        10.22         8.32 
TCGA-44-3918 TCGA-44-3919 TCGA-44-4112 TCGA-44-5643 TCGA-44-5645 TCGA-44-6144 
        6.44         6.21         4.60         3.48         6.84         0.30 
TCGA-44-6145 TCGA-44-6146 TCGA-44-6147 TCGA-44-6148 TCGA-44-6774 TCGA-44-6775 
        3.35         9.93         7.76         3.12         5.42         2.70 
TCGA-44-6776 TCGA-44-6777 TCGA-44-6778 TCGA-44-6779 TCGA-49-4486 TCGA-49-4488 
       63.72        32.45        36.49        16.41        76.21        28.57 
TCGA-49-4490 TCGA-49-4494 TCGA-49-4501 TCGA-49-4505 TCGA-49-4506 TCGA-49-4507 
       12.66        35.54        46.72        14.07        32.84         8.81 
TCGA-49-4510 TCGA-49-4512 TCGA-49-4514 TCGA-49-6742 TCGA-49-6744 TCGA-49-6745 
       29.46        29.75        43.20        15.02        12.99         4.93 
TCGA-50-5044 TCGA-50-5045 TCGA-50-5051 TCGA-50-5055 TCGA-50-5068 TCGA-50-5072 
       20.48        71.47        14.96        25.81        49.28         8.05 
TCGA-50-5930 TCGA-50-5931 TCGA-50-5932 TCGA-50-5933 TCGA-50-5935 TCGA-50-5936 
        9.27         8.78        35.87        77.88        21.47         8.45 
TCGA-50-5939 TCGA-50-5942 TCGA-50-5944 TCGA-50-5946 TCGA-50-6590 TCGA-50-6591 
       15.12         4.44        12.26        11.47        42.31         3.88 
TCGA-50-6593 TCGA-50-6595 TCGA-50-6597 TCGA-55-1592 TCGA-55-1594 TCGA-55-1596 
       11.05         6.21        33.37        23.05        38.73        45.17 
TCGA-55-5899 TCGA-55-6543 TCGA-55-6642 TCGA-55-6712 TCGA-64-1676 TCGA-64-1677 
        2.86         0.07        32.61         0.79        56.81        20.65 
TCGA-64-1678 TCGA-64-1680 TCGA-64-5774 TCGA-64-5775 TCGA-64-5778 TCGA-64-5779 
       39.09        37.02        83.84         0.10        30.44        16.67 
TCGA-64-5815 TCGA-67-3770 TCGA-67-3771 TCGA-67-3772 TCGA-67-3773 TCGA-67-3774 
        7.33         0.99         1.97         0.59         2.04         0.59 
TCGA-67-6215 TCGA-67-6216 TCGA-67-6217 TCGA-73-4658 TCGA-73-4659 TCGA-73-4662 
        0.89         0.69        13.87        52.57        23.38        29.95 
TCGA-73-4666 TCGA-73-4668 TCGA-73-4670 TCGA-73-4675 TCGA-73-4676 TCGA-73-4677 
       20.28        15.35         0.46         1.32         4.01         1.25 
TCGA-91-6828 TCGA-91-6829 TCGA-91-6835 TCGA-91-6836 
        1.22        41.33         1.15         0.36 

  OR4C16 MUTATED OR4C16 WILD-TYPE 
            1.28             0.07 
  OR4C16 MUTATED OR4C16 WILD-TYPE 
           48.82            85.32 
  OR4C16 MUTATED OR4C16 WILD-TYPE 
           12.16            13.94 
[1] "1.3 - 48.8 (12.2)" "0.1 - 85.3 (13.9)"
      TCGA-05-4249       TCGA-05-4250       TCGA-05-4382       TCGA-05-4384 
"OR4C16 WILD-TYPE" "OR4C16 WILD-TYPE"   "OR4C16 MUTATED" "OR4C16 WILD-TYPE" 
      TCGA-05-4390       TCGA-05-4396       TCGA-05-4397       TCGA-05-4398 
"OR4C16 WILD-TYPE"   "OR4C16 MUTATED" "OR4C16 WILD-TYPE" "OR4C16 WILD-TYPE" 
      TCGA-05-4402       TCGA-05-4405       TCGA-05-4415       TCGA-05-4417 
"OR4C16 WILD-TYPE" "OR4C16 WILD-TYPE" "OR4C16 WILD-TYPE" "OR4C16 WILD-TYPE" 
      TCGA-05-4418       TCGA-05-4420       TCGA-05-4424       TCGA-05-4426 
"OR4C16 WILD-TYPE" "OR4C16 WILD-TYPE" "OR4C16 WILD-TYPE" "OR4C16 WILD-TYPE" 
      TCGA-05-4427       TCGA-05-4430       TCGA-05-4432       TCGA-05-4433 
"OR4C16 WILD-TYPE" "OR4C16 WILD-TYPE" "OR4C16 WILD-TYPE" "OR4C16 WILD-TYPE" 
      TCGA-05-4434       TCGA-05-5420       TCGA-05-5423       TCGA-05-5425 
"OR4C16 WILD-TYPE" "OR4C16 WILD-TYPE" "OR4C16 WILD-TYPE" "OR4C16 WILD-TYPE" 
      TCGA-05-5429       TCGA-05-5715       TCGA-35-3615       TCGA-35-4122 
"OR4C16 WILD-TYPE" "OR4C16 WILD-TYPE" "OR4C16 WILD-TYPE" "OR4C16 WILD-TYPE" 
      TCGA-35-4123       TCGA-35-5375       TCGA-38-4625       TCGA-38-4626 
"OR4C16 WILD-TYPE" "OR4C16 WILD-TYPE" "OR4C16 WILD-TYPE" "OR4C16 WILD-TYPE" 
      TCGA-38-4627       TCGA-38-4628       TCGA-38-4629       TCGA-38-4630 
"OR4C16 WILD-TYPE" "OR4C16 WILD-TYPE" "OR4C16 WILD-TYPE" "OR4C16 WILD-TYPE" 
      TCGA-38-4631       TCGA-38-4632       TCGA-38-6178       TCGA-44-2655 
"OR4C16 WILD-TYPE" "OR4C16 WILD-TYPE" "OR4C16 WILD-TYPE" "OR4C16 WILD-TYPE" 
      TCGA-44-2656       TCGA-44-2657       TCGA-44-2659       TCGA-44-2661 
"OR4C16 WILD-TYPE" "OR4C16 WILD-TYPE" "OR4C16 WILD-TYPE" "OR4C16 WILD-TYPE" 
      TCGA-44-2662       TCGA-44-2665       TCGA-44-2666       TCGA-44-2668 
"OR4C16 WILD-TYPE" "OR4C16 WILD-TYPE" "OR4C16 WILD-TYPE" "OR4C16 WILD-TYPE" 
      TCGA-44-3396       TCGA-44-3398       TCGA-44-3918       TCGA-44-3919 
"OR4C16 WILD-TYPE" "OR4C16 WILD-TYPE" "OR4C16 WILD-TYPE" "OR4C16 WILD-TYPE" 
      TCGA-44-4112       TCGA-44-5643       TCGA-44-5645       TCGA-44-6144 
"OR4C16 WILD-TYPE" "OR4C16 WILD-TYPE" "OR4C16 WILD-TYPE" "OR4C16 WILD-TYPE" 
      TCGA-44-6145       TCGA-44-6146       TCGA-44-6147       TCGA-44-6148 
"OR4C16 WILD-TYPE" "OR4C16 WILD-TYPE" "OR4C16 WILD-TYPE" "OR4C16 WILD-TYPE" 
      TCGA-44-6774       TCGA-44-6775       TCGA-44-6776       TCGA-44-6777 
"OR4C16 WILD-TYPE" "OR4C16 WILD-TYPE" "OR4C16 WILD-TYPE" "OR4C16 WILD-TYPE" 
      TCGA-44-6778       TCGA-44-6779       TCGA-49-4486       TCGA-49-4487 
"OR4C16 WILD-TYPE" "OR4C16 WILD-TYPE" "OR4C16 WILD-TYPE"   "OR4C16 MUTATED" 
      TCGA-49-4488       TCGA-49-4490       TCGA-49-4494       TCGA-49-4501 
"OR4C16 WILD-TYPE" "OR4C16 WILD-TYPE" "OR4C16 WILD-TYPE" "OR4C16 WILD-TYPE" 
      TCGA-49-4505       TCGA-49-4506       TCGA-49-4507       TCGA-49-4510 
"OR4C16 WILD-TYPE" "OR4C16 WILD-TYPE" "OR4C16 WILD-TYPE" "OR4C16 WILD-TYPE" 
      TCGA-49-4512       TCGA-49-4514       TCGA-49-6742       TCGA-49-6743 
"OR4C16 WILD-TYPE" "OR4C16 WILD-TYPE" "OR4C16 WILD-TYPE"   "OR4C16 MUTATED" 
      TCGA-49-6744       TCGA-49-6745       TCGA-50-5044       TCGA-50-5045 
"OR4C16 WILD-TYPE" "OR4C16 WILD-TYPE" "OR4C16 WILD-TYPE" "OR4C16 WILD-TYPE" 
      TCGA-50-5049       TCGA-50-5051       TCGA-50-5055       TCGA-50-5066 
  "OR4C16 MUTATED" "OR4C16 WILD-TYPE" "OR4C16 WILD-TYPE"   "OR4C16 MUTATED" 
      TCGA-50-5068       TCGA-50-5072       TCGA-50-5930       TCGA-50-5931 
"OR4C16 WILD-TYPE" "OR4C16 WILD-TYPE" "OR4C16 WILD-TYPE" "OR4C16 WILD-TYPE" 
      TCGA-50-5932       TCGA-50-5933       TCGA-50-5935       TCGA-50-5936 
"OR4C16 WILD-TYPE" "OR4C16 WILD-TYPE" "OR4C16 WILD-TYPE" "OR4C16 WILD-TYPE" 
      TCGA-50-5939       TCGA-50-5941       TCGA-50-5942       TCGA-50-5944 
"OR4C16 WILD-TYPE"   "OR4C16 MUTATED" "OR4C16 WILD-TYPE" "OR4C16 WILD-TYPE" 
      TCGA-50-5946       TCGA-50-6590       TCGA-50-6591       TCGA-50-6592 
"OR4C16 WILD-TYPE" "OR4C16 WILD-TYPE" "OR4C16 WILD-TYPE"   "OR4C16 MUTATED" 
      TCGA-50-6593       TCGA-50-6594       TCGA-50-6595       TCGA-50-6597 
"OR4C16 WILD-TYPE"   "OR4C16 MUTATED" "OR4C16 WILD-TYPE" "OR4C16 WILD-TYPE" 
      TCGA-55-1592       TCGA-55-1594       TCGA-55-1595       TCGA-55-1596 
"OR4C16 WILD-TYPE" "OR4C16 WILD-TYPE"   "OR4C16 MUTATED" "OR4C16 WILD-TYPE" 
      TCGA-55-5899       TCGA-55-6543       TCGA-55-6642       TCGA-55-6712 
"OR4C16 WILD-TYPE" "OR4C16 WILD-TYPE" "OR4C16 WILD-TYPE" "OR4C16 WILD-TYPE" 
      TCGA-64-1676       TCGA-64-1677       TCGA-64-1678       TCGA-64-1680 
"OR4C16 WILD-TYPE" "OR4C16 WILD-TYPE" "OR4C16 WILD-TYPE" "OR4C16 WILD-TYPE" 
      TCGA-64-5774       TCGA-64-5775       TCGA-64-5778       TCGA-64-5779 
"OR4C16 WILD-TYPE" "OR4C16 WILD-TYPE" "OR4C16 WILD-TYPE" "OR4C16 WILD-TYPE" 
      TCGA-64-5781       TCGA-64-5815       TCGA-67-3770       TCGA-67-3771 
  "OR4C16 MUTATED" "OR4C16 WILD-TYPE" "OR4C16 WILD-TYPE" "OR4C16 WILD-TYPE" 
      TCGA-67-3772       TCGA-67-3773       TCGA-67-3774       TCGA-67-6215 
"OR4C16 WILD-TYPE" "OR4C16 WILD-TYPE" "OR4C16 WILD-TYPE" "OR4C16 WILD-TYPE" 
      TCGA-67-6216       TCGA-67-6217       TCGA-71-6725       TCGA-73-4658 
"OR4C16 WILD-TYPE" "OR4C16 WILD-TYPE"   "OR4C16 MUTATED" "OR4C16 WILD-TYPE" 
      TCGA-73-4659       TCGA-73-4662       TCGA-73-4666       TCGA-73-4668 
"OR4C16 WILD-TYPE" "OR4C16 WILD-TYPE" "OR4C16 WILD-TYPE" "OR4C16 WILD-TYPE" 
      TCGA-73-4670       TCGA-73-4675       TCGA-73-4676       TCGA-73-4677 
"OR4C16 WILD-TYPE" "OR4C16 WILD-TYPE" "OR4C16 WILD-TYPE" "OR4C16 WILD-TYPE" 
      TCGA-91-6828       TCGA-91-6829       TCGA-91-6831       TCGA-91-6835 
"OR4C16 WILD-TYPE" "OR4C16 WILD-TYPE"   "OR4C16 MUTATED" "OR4C16 WILD-TYPE" 
      TCGA-91-6836 
"OR4C16 WILD-TYPE" 
      TCGA-05-4249       TCGA-05-4250       TCGA-05-4382       TCGA-05-4384 
"OR4C16 WILD-TYPE" "OR4C16 WILD-TYPE"   "OR4C16 MUTATED" "OR4C16 WILD-TYPE" 
      TCGA-05-4390       TCGA-05-4396       TCGA-05-4397       TCGA-05-4398 
"OR4C16 WILD-TYPE"   "OR4C16 MUTATED" "OR4C16 WILD-TYPE" "OR4C16 WILD-TYPE" 
      TCGA-05-4402       TCGA-05-4405       TCGA-05-4415       TCGA-05-4417 
"OR4C16 WILD-TYPE" "OR4C16 WILD-TYPE" "OR4C16 WILD-TYPE" "OR4C16 WILD-TYPE" 
      TCGA-05-4418       TCGA-05-4420       TCGA-05-4424       TCGA-05-4426 
"OR4C16 WILD-TYPE" "OR4C16 WILD-TYPE" "OR4C16 WILD-TYPE" "OR4C16 WILD-TYPE" 
      TCGA-05-4427       TCGA-05-4430       TCGA-05-4432       TCGA-05-4433 
"OR4C16 WILD-TYPE" "OR4C16 WILD-TYPE" "OR4C16 WILD-TYPE" "OR4C16 WILD-TYPE" 
      TCGA-05-4434       TCGA-05-5420       TCGA-05-5423       TCGA-05-5425 
"OR4C16 WILD-TYPE" "OR4C16 WILD-TYPE" "OR4C16 WILD-TYPE" "OR4C16 WILD-TYPE" 
      TCGA-05-5429       TCGA-05-5715       TCGA-35-3615       TCGA-35-4122 
"OR4C16 WILD-TYPE" "OR4C16 WILD-TYPE" "OR4C16 WILD-TYPE" "OR4C16 WILD-TYPE" 
      TCGA-35-4123       TCGA-35-5375       TCGA-38-4625       TCGA-38-4626 
"OR4C16 WILD-TYPE" "OR4C16 WILD-TYPE" "OR4C16 WILD-TYPE" "OR4C16 WILD-TYPE" 
      TCGA-38-4627       TCGA-38-4628       TCGA-38-4629       TCGA-38-4630 
"OR4C16 WILD-TYPE" "OR4C16 WILD-TYPE" "OR4C16 WILD-TYPE" "OR4C16 WILD-TYPE" 
      TCGA-38-4631       TCGA-38-4632       TCGA-38-6178       TCGA-44-2655 
"OR4C16 WILD-TYPE" "OR4C16 WILD-TYPE" "OR4C16 WILD-TYPE" "OR4C16 WILD-TYPE" 
      TCGA-44-2656       TCGA-44-2657       TCGA-44-2659       TCGA-44-2661 
"OR4C16 WILD-TYPE" "OR4C16 WILD-TYPE" "OR4C16 WILD-TYPE" "OR4C16 WILD-TYPE" 
      TCGA-44-2662       TCGA-44-2665       TCGA-44-2666       TCGA-44-2668 
"OR4C16 WILD-TYPE" "OR4C16 WILD-TYPE" "OR4C16 WILD-TYPE" "OR4C16 WILD-TYPE" 
      TCGA-44-3396       TCGA-44-3398       TCGA-44-3918       TCGA-44-3919 
"OR4C16 WILD-TYPE" "OR4C16 WILD-TYPE" "OR4C16 WILD-TYPE" "OR4C16 WILD-TYPE" 
      TCGA-44-4112       TCGA-44-5643       TCGA-44-5645       TCGA-44-6144 
"OR4C16 WILD-TYPE" "OR4C16 WILD-TYPE" "OR4C16 WILD-TYPE" "OR4C16 WILD-TYPE" 
      TCGA-44-6145       TCGA-44-6146       TCGA-44-6147       TCGA-44-6148 
"OR4C16 WILD-TYPE" "OR4C16 WILD-TYPE" "OR4C16 WILD-TYPE" "OR4C16 WILD-TYPE" 
      TCGA-44-6774       TCGA-44-6775       TCGA-44-6776       TCGA-44-6777 
"OR4C16 WILD-TYPE" "OR4C16 WILD-TYPE" "OR4C16 WILD-TYPE" "OR4C16 WILD-TYPE" 
      TCGA-44-6778       TCGA-44-6779       TCGA-49-4486       TCGA-49-4487 
"OR4C16 WILD-TYPE" "OR4C16 WILD-TYPE" "OR4C16 WILD-TYPE"   "OR4C16 MUTATED" 
      TCGA-49-4488       TCGA-49-4490       TCGA-49-4494       TCGA-49-4501 
"OR4C16 WILD-TYPE" "OR4C16 WILD-TYPE" "OR4C16 WILD-TYPE" "OR4C16 WILD-TYPE" 
      TCGA-49-4505       TCGA-49-4506       TCGA-49-4507       TCGA-49-4510 
"OR4C16 WILD-TYPE" "OR4C16 WILD-TYPE" "OR4C16 WILD-TYPE" "OR4C16 WILD-TYPE" 
      TCGA-49-4512       TCGA-49-4514       TCGA-49-6742       TCGA-49-6743 
"OR4C16 WILD-TYPE" "OR4C16 WILD-TYPE" "OR4C16 WILD-TYPE"   "OR4C16 MUTATED" 
      TCGA-49-6744       TCGA-49-6745       TCGA-50-5044       TCGA-50-5045 
"OR4C16 WILD-TYPE" "OR4C16 WILD-TYPE" "OR4C16 WILD-TYPE" "OR4C16 WILD-TYPE" 
      TCGA-50-5049       TCGA-50-5051       TCGA-50-5055       TCGA-50-5066 
  "OR4C16 MUTATED" "OR4C16 WILD-TYPE" "OR4C16 WILD-TYPE"   "OR4C16 MUTATED" 
      TCGA-50-5068       TCGA-50-5072       TCGA-50-5930       TCGA-50-5931 
"OR4C16 WILD-TYPE" "OR4C16 WILD-TYPE" "OR4C16 WILD-TYPE" "OR4C16 WILD-TYPE" 
      TCGA-50-5932       TCGA-50-5933       TCGA-50-5935       TCGA-50-5936 
"OR4C16 WILD-TYPE" "OR4C16 WILD-TYPE" "OR4C16 WILD-TYPE" "OR4C16 WILD-TYPE" 
      TCGA-50-5939       TCGA-50-5941       TCGA-50-5942       TCGA-50-5944 
"OR4C16 WILD-TYPE"   "OR4C16 MUTATED" "OR4C16 WILD-TYPE" "OR4C16 WILD-TYPE" 
      TCGA-50-5946       TCGA-50-6590       TCGA-50-6591       TCGA-50-6592 
"OR4C16 WILD-TYPE" "OR4C16 WILD-TYPE" "OR4C16 WILD-TYPE"   "OR4C16 MUTATED" 
      TCGA-50-6593       TCGA-50-6594       TCGA-50-6595       TCGA-50-6597 
"OR4C16 WILD-TYPE"   "OR4C16 MUTATED" "OR4C16 WILD-TYPE" "OR4C16 WILD-TYPE" 
      TCGA-55-1592       TCGA-55-1594       TCGA-55-1595       TCGA-55-1596 
"OR4C16 WILD-TYPE" "OR4C16 WILD-TYPE"   "OR4C16 MUTATED" "OR4C16 WILD-TYPE" 
      TCGA-55-5899       TCGA-55-6543       TCGA-55-6642       TCGA-55-6712 
"OR4C16 WILD-TYPE" "OR4C16 WILD-TYPE" "OR4C16 WILD-TYPE" "OR4C16 WILD-TYPE" 
      TCGA-64-1676       TCGA-64-1677       TCGA-64-1678       TCGA-64-1680 
"OR4C16 WILD-TYPE" "OR4C16 WILD-TYPE" "OR4C16 WILD-TYPE" "OR4C16 WILD-TYPE" 
      TCGA-64-5774       TCGA-64-5775       TCGA-64-5778       TCGA-64-5779 
"OR4C16 WILD-TYPE" "OR4C16 WILD-TYPE" "OR4C16 WILD-TYPE" "OR4C16 WILD-TYPE" 
      TCGA-64-5781       TCGA-64-5815       TCGA-67-3770       TCGA-67-3771 
  "OR4C16 MUTATED" "OR4C16 WILD-TYPE" "OR4C16 WILD-TYPE" "OR4C16 WILD-TYPE" 
      TCGA-67-3772       TCGA-67-3773       TCGA-67-3774       TCGA-67-6215 
"OR4C16 WILD-TYPE" "OR4C16 WILD-TYPE" "OR4C16 WILD-TYPE" "OR4C16 WILD-TYPE" 
      TCGA-67-6216       TCGA-67-6217       TCGA-71-6725       TCGA-73-4658 
"OR4C16 WILD-TYPE" "OR4C16 WILD-TYPE"   "OR4C16 MUTATED" "OR4C16 WILD-TYPE" 
      TCGA-73-4659       TCGA-73-4662       TCGA-73-4666       TCGA-73-4668 
"OR4C16 WILD-TYPE" "OR4C16 WILD-TYPE" "OR4C16 WILD-TYPE" "OR4C16 WILD-TYPE" 
      TCGA-73-4670       TCGA-73-4675       TCGA-73-4676       TCGA-73-4677 
"OR4C16 WILD-TYPE" "OR4C16 WILD-TYPE" "OR4C16 WILD-TYPE" "OR4C16 WILD-TYPE" 
      TCGA-91-6828       TCGA-91-6829       TCGA-91-6831       TCGA-91-6835 
"OR4C16 WILD-TYPE" "OR4C16 WILD-TYPE"   "OR4C16 MUTATED" "OR4C16 WILD-TYPE" 
      TCGA-91-6836 
"OR4C16 WILD-TYPE" 
      TCGA-05-4249       TCGA-05-4250       TCGA-05-4382       TCGA-05-4384 
"OR4C16 WILD-TYPE" "OR4C16 WILD-TYPE"   "OR4C16 MUTATED" "OR4C16 WILD-TYPE" 
      TCGA-05-4390       TCGA-05-4396       TCGA-05-4397       TCGA-05-4398 
"OR4C16 WILD-TYPE"   "OR4C16 MUTATED" "OR4C16 WILD-TYPE" "OR4C16 WILD-TYPE" 
      TCGA-05-4402       TCGA-05-4405       TCGA-05-4415       TCGA-05-4417 
"OR4C16 WILD-TYPE" "OR4C16 WILD-TYPE" "OR4C16 WILD-TYPE" "OR4C16 WILD-TYPE" 
      TCGA-05-4418       TCGA-05-4420       TCGA-05-4424       TCGA-05-4426 
"OR4C16 WILD-TYPE" "OR4C16 WILD-TYPE" "OR4C16 WILD-TYPE" "OR4C16 WILD-TYPE" 
      TCGA-05-4427       TCGA-05-4430       TCGA-05-4432       TCGA-05-4433 
"OR4C16 WILD-TYPE" "OR4C16 WILD-TYPE" "OR4C16 WILD-TYPE" "OR4C16 WILD-TYPE" 
      TCGA-05-4434       TCGA-05-5420       TCGA-05-5423       TCGA-05-5425 
"OR4C16 WILD-TYPE" "OR4C16 WILD-TYPE" "OR4C16 WILD-TYPE" "OR4C16 WILD-TYPE" 
      TCGA-05-5429       TCGA-05-5715       TCGA-35-3615       TCGA-35-4122 
"OR4C16 WILD-TYPE" "OR4C16 WILD-TYPE" "OR4C16 WILD-TYPE" "OR4C16 WILD-TYPE" 
      TCGA-35-4123       TCGA-35-5375       TCGA-38-4625       TCGA-38-4626 
"OR4C16 WILD-TYPE" "OR4C16 WILD-TYPE" "OR4C16 WILD-TYPE" "OR4C16 WILD-TYPE" 
      TCGA-38-4627       TCGA-38-4628       TCGA-38-4629       TCGA-38-4630 
"OR4C16 WILD-TYPE" "OR4C16 WILD-TYPE" "OR4C16 WILD-TYPE" "OR4C16 WILD-TYPE" 
      TCGA-38-4631       TCGA-38-4632       TCGA-38-6178       TCGA-44-2655 
"OR4C16 WILD-TYPE" "OR4C16 WILD-TYPE" "OR4C16 WILD-TYPE" "OR4C16 WILD-TYPE" 
      TCGA-44-2656       TCGA-44-2657       TCGA-44-2659       TCGA-44-2661 
"OR4C16 WILD-TYPE" "OR4C16 WILD-TYPE" "OR4C16 WILD-TYPE" "OR4C16 WILD-TYPE" 
      TCGA-44-2662       TCGA-44-2665       TCGA-44-2666       TCGA-44-2668 
"OR4C16 WILD-TYPE" "OR4C16 WILD-TYPE" "OR4C16 WILD-TYPE" "OR4C16 WILD-TYPE" 
      TCGA-44-3396       TCGA-44-3398       TCGA-44-3918       TCGA-44-3919 
"OR4C16 WILD-TYPE" "OR4C16 WILD-TYPE" "OR4C16 WILD-TYPE" "OR4C16 WILD-TYPE" 
      TCGA-44-4112       TCGA-44-5643       TCGA-44-5645       TCGA-44-6144 
"OR4C16 WILD-TYPE" "OR4C16 WILD-TYPE" "OR4C16 WILD-TYPE" "OR4C16 WILD-TYPE" 
      TCGA-44-6145       TCGA-44-6146       TCGA-44-6147       TCGA-44-6148 
"OR4C16 WILD-TYPE" "OR4C16 WILD-TYPE" "OR4C16 WILD-TYPE" "OR4C16 WILD-TYPE" 
      TCGA-44-6774       TCGA-44-6775       TCGA-44-6776       TCGA-44-6777 
"OR4C16 WILD-TYPE" "OR4C16 WILD-TYPE" "OR4C16 WILD-TYPE" "OR4C16 WILD-TYPE" 
      TCGA-44-6778       TCGA-44-6779       TCGA-49-4486       TCGA-49-4487 
"OR4C16 WILD-TYPE" "OR4C16 WILD-TYPE" "OR4C16 WILD-TYPE"   "OR4C16 MUTATED" 
      TCGA-49-4488       TCGA-49-4490       TCGA-49-4494       TCGA-49-4501 
"OR4C16 WILD-TYPE" "OR4C16 WILD-TYPE" "OR4C16 WILD-TYPE" "OR4C16 WILD-TYPE" 
      TCGA-49-4505       TCGA-49-4506       TCGA-49-4507       TCGA-49-4510 
"OR4C16 WILD-TYPE" "OR4C16 WILD-TYPE" "OR4C16 WILD-TYPE" "OR4C16 WILD-TYPE" 
      TCGA-49-4512       TCGA-49-4514       TCGA-49-6742       TCGA-49-6743 
"OR4C16 WILD-TYPE" "OR4C16 WILD-TYPE" "OR4C16 WILD-TYPE"   "OR4C16 MUTATED" 
      TCGA-49-6744       TCGA-49-6745       TCGA-50-5044       TCGA-50-5045 
"OR4C16 WILD-TYPE" "OR4C16 WILD-TYPE" "OR4C16 WILD-TYPE" "OR4C16 WILD-TYPE" 
      TCGA-50-5049       TCGA-50-5051       TCGA-50-5055       TCGA-50-5066 
  "OR4C16 MUTATED" "OR4C16 WILD-TYPE" "OR4C16 WILD-TYPE"   "OR4C16 MUTATED" 
      TCGA-50-5068       TCGA-50-5072       TCGA-50-5930       TCGA-50-5931 
"OR4C16 WILD-TYPE" "OR4C16 WILD-TYPE" "OR4C16 WILD-TYPE" "OR4C16 WILD-TYPE" 
      TCGA-50-5932       TCGA-50-5933       TCGA-50-5935       TCGA-50-5936 
"OR4C16 WILD-TYPE" "OR4C16 WILD-TYPE" "OR4C16 WILD-TYPE" "OR4C16 WILD-TYPE" 
      TCGA-50-5939       TCGA-50-5941       TCGA-50-5942       TCGA-50-5944 
"OR4C16 WILD-TYPE"   "OR4C16 MUTATED" "OR4C16 WILD-TYPE" "OR4C16 WILD-TYPE" 
      TCGA-50-5946       TCGA-50-6590       TCGA-50-6591       TCGA-50-6592 
"OR4C16 WILD-TYPE" "OR4C16 WILD-TYPE" "OR4C16 WILD-TYPE"   "OR4C16 MUTATED" 
      TCGA-50-6593       TCGA-50-6594       TCGA-50-6595       TCGA-50-6597 
"OR4C16 WILD-TYPE"   "OR4C16 MUTATED" "OR4C16 WILD-TYPE" "OR4C16 WILD-TYPE" 
      TCGA-55-1592       TCGA-55-1594       TCGA-55-1595       TCGA-55-1596 
"OR4C16 WILD-TYPE" "OR4C16 WILD-TYPE"   "OR4C16 MUTATED" "OR4C16 WILD-TYPE" 
      TCGA-55-5899       TCGA-55-6543       TCGA-55-6642       TCGA-55-6712 
"OR4C16 WILD-TYPE" "OR4C16 WILD-TYPE" "OR4C16 WILD-TYPE" "OR4C16 WILD-TYPE" 
      TCGA-64-1676       TCGA-64-1677       TCGA-64-1678       TCGA-64-1680 
"OR4C16 WILD-TYPE" "OR4C16 WILD-TYPE" "OR4C16 WILD-TYPE" "OR4C16 WILD-TYPE" 
      TCGA-64-5774       TCGA-64-5775       TCGA-64-5778       TCGA-64-5779 
"OR4C16 WILD-TYPE" "OR4C16 WILD-TYPE" "OR4C16 WILD-TYPE" "OR4C16 WILD-TYPE" 
      TCGA-64-5781       TCGA-64-5815       TCGA-67-3770       TCGA-67-3771 
  "OR4C16 MUTATED" "OR4C16 WILD-TYPE" "OR4C16 WILD-TYPE" "OR4C16 WILD-TYPE" 
      TCGA-67-3772       TCGA-67-3773       TCGA-67-3774       TCGA-67-6215 
"OR4C16 WILD-TYPE" "OR4C16 WILD-TYPE" "OR4C16 WILD-TYPE" "OR4C16 WILD-TYPE" 
      TCGA-67-6216       TCGA-67-6217       TCGA-71-6725       TCGA-73-4658 
"OR4C16 WILD-TYPE" "OR4C16 WILD-TYPE"   "OR4C16 MUTATED" "OR4C16 WILD-TYPE" 
      TCGA-73-4659       TCGA-73-4662       TCGA-73-4666       TCGA-73-4668 
"OR4C16 WILD-TYPE" "OR4C16 WILD-TYPE" "OR4C16 WILD-TYPE" "OR4C16 WILD-TYPE" 
      TCGA-73-4670       TCGA-73-4675       TCGA-73-4676       TCGA-73-4677 
"OR4C16 WILD-TYPE" "OR4C16 WILD-TYPE" "OR4C16 WILD-TYPE" "OR4C16 WILD-TYPE" 
      TCGA-91-6828       TCGA-91-6829       TCGA-91-6831       TCGA-91-6835 
"OR4C16 WILD-TYPE" "OR4C16 WILD-TYPE"   "OR4C16 MUTATED" "OR4C16 WILD-TYPE" 
      TCGA-91-6836 
"OR4C16 WILD-TYPE" 
[1] "hr=" "1.1"
D20V2, continuous
D20V3, binary
[1] "tbl2"
                  cls
clus               [,1] [,2]
  OR4C16 MUTATED      8    5
  OR4C16 WILD-TYPE   85   74
        clus
vv       OR4C16 MUTATED OR4C16 WILD-TYPE
  FEMALE              8               85
  MALE                5               74
D20V4, continuous
[1] "Remove cluster labels:" "OR4C16 MUTATED"        
clus
  OR4C16 MUTATED OR4C16 WILD-TYPE 
               1               11 
      TCGA-35-4122       TCGA-35-4123       TCGA-35-5375       TCGA-64-1677 
"OR4C16 WILD-TYPE" "OR4C16 WILD-TYPE" "OR4C16 WILD-TYPE" "OR4C16 WILD-TYPE" 
      TCGA-64-5778       TCGA-73-4659       TCGA-73-4662       TCGA-73-4666 
"OR4C16 WILD-TYPE" "OR4C16 WILD-TYPE" "OR4C16 WILD-TYPE" "OR4C16 WILD-TYPE" 
      TCGA-73-4668       TCGA-73-4676       TCGA-75-5122 
"OR4C16 WILD-TYPE" "OR4C16 WILD-TYPE" "OR4C16 WILD-TYPE" 
D20V5, multiclass
D20V6, multiclass
    clus
vv   OR4C16 MUTATED OR4C16 WILD-TYPE
  T1              4               37
  T2              7              101
  T3              1               13
  T4              1                7
D20V7, multiclass
       clus
vv      OR4C16 MUTATED OR4C16 WILD-TYPE
  N0                 9               86
  N1                 1               36
  N2+N3              3               32
D20V8, multiclass
    clus
vv   OR4C16 MUTATED OR4C16 WILD-TYPE
  M0             11              126
  M1              0                9
  MX              2               20
D20V9, multiclass
     clus
vv    OR4C16 MUTATED OR4C16 WILD-TYPE
  I                9               79
  II               0               33
  III              4               35
  IV               0                9
D20V10, binary
[1] "tbl2"
                  cls
clus               [,1] [,2]
  OR4C16 MUTATED      1   12
  OR4C16 WILD-TYPE   15  144
     clus
vv    OR4C16 MUTATED OR4C16 WILD-TYPE
  NO               1               15
  YES             12              144
D20V11, continuous
D20V12, continuous
D20V13, multiclass
                                             clus
vv                                            OR4C16 MUTATED OR4C16 WILD-TYPE
  CURRENT REFORMED SMOKER FOR < OR = 15 YEARS              7               55
  CURRENT REFORMED SMOKER FOR > 15 YEARS                   1               45
  CURRENT SMOKER                                           3               25
  LIFELONG NON-SMOKER                                      1               23
D20V14, continuous

Clustering(21) Variable = ZNF676 MUTATION ANALYSIS
D21V1, survival
                  sevent
clus2               0  1
  ZNF676 MUTATED    9  5
  ZNF676 WILD-TYPE 90 45
  ZNF676 MUTATED ZNF676 WILD-TYPE 
              14              135 
  ZNF676 MUTATED ZNF676 WILD-TYPE 
               5               45 
$`ZNF676 MUTATED`
TCGA-05-4382 TCGA-05-4417 TCGA-05-4418 TCGA-05-4424 TCGA-38-4631 TCGA-44-6144 
       19.92        14.93         8.98        30.02        11.64         0.30 
TCGA-44-6777 TCGA-50-5931 TCGA-55-1595 TCGA-55-5899 TCGA-64-5781 TCGA-67-3771 
       32.45         8.78        48.62         2.86        39.52         1.97 
TCGA-73-4658 TCGA-73-4668 
       52.57        15.35 

$`ZNF676 WILD-TYPE`
TCGA-05-4249 TCGA-05-4250 TCGA-05-4384 TCGA-05-4390 TCGA-05-4396 TCGA-05-4397 
       38.07         3.98        14.01        37.02         9.96        24.03 
TCGA-05-4398 TCGA-05-4402 TCGA-05-4405 TCGA-05-4415 TCGA-05-4420 TCGA-05-4426 
       47.05         8.02        20.05         2.96        29.95        26.01 
TCGA-05-4427 TCGA-05-4430 TCGA-05-4432 TCGA-05-4433 TCGA-05-4434 TCGA-05-5420 
       26.01        25.02        25.02        24.00        15.02         1.02 
TCGA-05-5423 TCGA-05-5425 TCGA-05-5429 TCGA-05-5715 TCGA-35-3615 TCGA-35-4122 
        4.96         2.96         0.99         2.04         0.46         7.36 
TCGA-35-4123 TCGA-35-5375 TCGA-38-4625 TCGA-38-4626 TCGA-38-4627 TCGA-38-4628 
        5.95         8.68        47.61        85.32        37.71        49.02 
TCGA-38-4629 TCGA-38-4630 TCGA-38-4632 TCGA-38-6178 TCGA-44-2655 TCGA-44-2656 
       28.37        35.28        44.61         5.19        18.87        19.10 
TCGA-44-2657 TCGA-44-2659 TCGA-44-2661 TCGA-44-2662 TCGA-44-2665 TCGA-44-2666 
       13.15        17.39         3.39        15.78        13.15         3.19 
TCGA-44-2668 TCGA-44-3396 TCGA-44-3398 TCGA-44-3918 TCGA-44-3919 TCGA-44-4112 
        8.09        10.22         8.32         6.44         6.21         4.60 
TCGA-44-5643 TCGA-44-5645 TCGA-44-6145 TCGA-44-6146 TCGA-44-6147 TCGA-44-6148 
        3.48         6.84         3.35         9.93         7.76         3.12 
TCGA-44-6774 TCGA-44-6775 TCGA-44-6776 TCGA-44-6778 TCGA-44-6779 TCGA-49-4486 
        5.42         2.70        63.72        36.49        16.41        76.21 
TCGA-49-4487 TCGA-49-4488 TCGA-49-4490 TCGA-49-4494 TCGA-49-4501 TCGA-49-4505 
       28.11        28.57        12.66        35.54        46.72        14.07 
TCGA-49-4506 TCGA-49-4507 TCGA-49-4510 TCGA-49-4512 TCGA-49-4514 TCGA-49-6742 
       32.84         8.81        29.46        29.75        43.20        15.02 
TCGA-49-6743 TCGA-49-6744 TCGA-49-6745 TCGA-50-5044 TCGA-50-5045 TCGA-50-5049 
       12.13        12.99         4.93        20.48        71.47        48.82 
TCGA-50-5051 TCGA-50-5055 TCGA-50-5066 TCGA-50-5068 TCGA-50-5072 TCGA-50-5930 
       14.96        25.81         9.76        49.28         8.05         9.27 
TCGA-50-5932 TCGA-50-5933 TCGA-50-5935 TCGA-50-5936 TCGA-50-5939 TCGA-50-5941 
       35.87        77.88        21.47         8.45        15.12         9.37 
TCGA-50-5942 TCGA-50-5944 TCGA-50-5946 TCGA-50-6590 TCGA-50-6591 TCGA-50-6592 
        4.44        12.26        11.47        42.31         3.88        25.51 
TCGA-50-6593 TCGA-50-6594 TCGA-50-6595 TCGA-50-6597 TCGA-55-1592 TCGA-55-1594 
       11.05        12.16         6.21        33.37        23.05        38.73 
TCGA-55-1596 TCGA-55-6543 TCGA-55-6642 TCGA-55-6712 TCGA-64-1676 TCGA-64-1677 
       45.17         0.07        32.61         0.79        56.81        20.65 
TCGA-64-1678 TCGA-64-1680 TCGA-64-5774 TCGA-64-5775 TCGA-64-5778 TCGA-64-5779 
       39.09        37.02        83.84         0.10        30.44        16.67 
TCGA-64-5815 TCGA-67-3770 TCGA-67-3772 TCGA-67-3773 TCGA-67-3774 TCGA-67-6215 
        7.33         0.99         0.59         2.04         0.59         0.89 
TCGA-67-6216 TCGA-67-6217 TCGA-71-6725 TCGA-73-4659 TCGA-73-4662 TCGA-73-4666 
        0.69        13.87         2.01        23.38        29.95        20.28 
TCGA-73-4670 TCGA-73-4675 TCGA-73-4676 TCGA-73-4677 TCGA-91-6828 TCGA-91-6829 
        0.46         1.32         4.01         1.25         1.22        41.33 
TCGA-91-6831 TCGA-91-6835 TCGA-91-6836 
        1.28         1.15         0.36 

  ZNF676 MUTATED ZNF676 WILD-TYPE 
            0.30             0.07 
  ZNF676 MUTATED ZNF676 WILD-TYPE 
           52.57            85.32 
  ZNF676 MUTATED ZNF676 WILD-TYPE 
           15.14            13.15 
[1] "0.3 - 52.6 (15.1)" "0.1 - 85.3 (13.2)"
      TCGA-05-4249       TCGA-05-4250       TCGA-05-4382       TCGA-05-4384 
"ZNF676 WILD-TYPE" "ZNF676 WILD-TYPE"   "ZNF676 MUTATED" "ZNF676 WILD-TYPE" 
      TCGA-05-4390       TCGA-05-4396       TCGA-05-4397       TCGA-05-4398 
"ZNF676 WILD-TYPE" "ZNF676 WILD-TYPE" "ZNF676 WILD-TYPE" "ZNF676 WILD-TYPE" 
      TCGA-05-4402       TCGA-05-4405       TCGA-05-4415       TCGA-05-4417 
"ZNF676 WILD-TYPE" "ZNF676 WILD-TYPE" "ZNF676 WILD-TYPE"   "ZNF676 MUTATED" 
      TCGA-05-4418       TCGA-05-4420       TCGA-05-4424       TCGA-05-4426 
  "ZNF676 MUTATED" "ZNF676 WILD-TYPE"   "ZNF676 MUTATED" "ZNF676 WILD-TYPE" 
      TCGA-05-4427       TCGA-05-4430       TCGA-05-4432       TCGA-05-4433 
"ZNF676 WILD-TYPE" "ZNF676 WILD-TYPE" "ZNF676 WILD-TYPE" "ZNF676 WILD-TYPE" 
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"ZNF676 WILD-TYPE" "ZNF676 WILD-TYPE" "ZNF676 WILD-TYPE" "ZNF676 WILD-TYPE" 
      TCGA-05-5429       TCGA-05-5715       TCGA-35-3615       TCGA-35-4122 
"ZNF676 WILD-TYPE" "ZNF676 WILD-TYPE" "ZNF676 WILD-TYPE" "ZNF676 WILD-TYPE" 
      TCGA-35-4123       TCGA-35-5375       TCGA-38-4625       TCGA-38-4626 
"ZNF676 WILD-TYPE" "ZNF676 WILD-TYPE" "ZNF676 WILD-TYPE" "ZNF676 WILD-TYPE" 
      TCGA-38-4627       TCGA-38-4628       TCGA-38-4629       TCGA-38-4630 
"ZNF676 WILD-TYPE" "ZNF676 WILD-TYPE" "ZNF676 WILD-TYPE" "ZNF676 WILD-TYPE" 
      TCGA-38-4631       TCGA-38-4632       TCGA-38-6178       TCGA-44-2655 
  "ZNF676 MUTATED" "ZNF676 WILD-TYPE" "ZNF676 WILD-TYPE" "ZNF676 WILD-TYPE" 
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"ZNF676 WILD-TYPE" "ZNF676 WILD-TYPE" "ZNF676 WILD-TYPE" "ZNF676 WILD-TYPE" 
      TCGA-44-2662       TCGA-44-2665       TCGA-44-2666       TCGA-44-2668 
"ZNF676 WILD-TYPE" "ZNF676 WILD-TYPE" "ZNF676 WILD-TYPE" "ZNF676 WILD-TYPE" 
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"ZNF676 WILD-TYPE" "ZNF676 WILD-TYPE" "ZNF676 WILD-TYPE" "ZNF676 WILD-TYPE" 
      TCGA-44-4112       TCGA-44-5643       TCGA-44-5645       TCGA-44-6144 
"ZNF676 WILD-TYPE" "ZNF676 WILD-TYPE" "ZNF676 WILD-TYPE"   "ZNF676 MUTATED" 
      TCGA-44-6145       TCGA-44-6146       TCGA-44-6147       TCGA-44-6148 
"ZNF676 WILD-TYPE" "ZNF676 WILD-TYPE" "ZNF676 WILD-TYPE" "ZNF676 WILD-TYPE" 
      TCGA-44-6774       TCGA-44-6775       TCGA-44-6776       TCGA-44-6777 
"ZNF676 WILD-TYPE" "ZNF676 WILD-TYPE" "ZNF676 WILD-TYPE"   "ZNF676 MUTATED" 
      TCGA-44-6778       TCGA-44-6779       TCGA-49-4486       TCGA-49-4487 
"ZNF676 WILD-TYPE" "ZNF676 WILD-TYPE" "ZNF676 WILD-TYPE" "ZNF676 WILD-TYPE" 
      TCGA-49-4488       TCGA-49-4490       TCGA-49-4494       TCGA-49-4501 
"ZNF676 WILD-TYPE" "ZNF676 WILD-TYPE" "ZNF676 WILD-TYPE" "ZNF676 WILD-TYPE" 
      TCGA-49-4505       TCGA-49-4506       TCGA-49-4507       TCGA-49-4510 
"ZNF676 WILD-TYPE" "ZNF676 WILD-TYPE" "ZNF676 WILD-TYPE" "ZNF676 WILD-TYPE" 
      TCGA-49-4512       TCGA-49-4514       TCGA-49-6742       TCGA-49-6743 
"ZNF676 WILD-TYPE" "ZNF676 WILD-TYPE" "ZNF676 WILD-TYPE" "ZNF676 WILD-TYPE" 
      TCGA-49-6744       TCGA-49-6745       TCGA-50-5044       TCGA-50-5045 
"ZNF676 WILD-TYPE" "ZNF676 WILD-TYPE" "ZNF676 WILD-TYPE" "ZNF676 WILD-TYPE" 
      TCGA-50-5049       TCGA-50-5051       TCGA-50-5055       TCGA-50-5066 
"ZNF676 WILD-TYPE" "ZNF676 WILD-TYPE" "ZNF676 WILD-TYPE" "ZNF676 WILD-TYPE" 
      TCGA-50-5068       TCGA-50-5072       TCGA-50-5930       TCGA-50-5931 
"ZNF676 WILD-TYPE" "ZNF676 WILD-TYPE" "ZNF676 WILD-TYPE"   "ZNF676 MUTATED" 
      TCGA-50-5932       TCGA-50-5933       TCGA-50-5935       TCGA-50-5936 
"ZNF676 WILD-TYPE" "ZNF676 WILD-TYPE" "ZNF676 WILD-TYPE" "ZNF676 WILD-TYPE" 
      TCGA-50-5939       TCGA-50-5941       TCGA-50-5942       TCGA-50-5944 
"ZNF676 WILD-TYPE" "ZNF676 WILD-TYPE" "ZNF676 WILD-TYPE" "ZNF676 WILD-TYPE" 
      TCGA-50-5946       TCGA-50-6590       TCGA-50-6591       TCGA-50-6592 
"ZNF676 WILD-TYPE" "ZNF676 WILD-TYPE" "ZNF676 WILD-TYPE" "ZNF676 WILD-TYPE" 
      TCGA-50-6593       TCGA-50-6594       TCGA-50-6595       TCGA-50-6597 
"ZNF676 WILD-TYPE" "ZNF676 WILD-TYPE" "ZNF676 WILD-TYPE" "ZNF676 WILD-TYPE" 
      TCGA-55-1592       TCGA-55-1594       TCGA-55-1595       TCGA-55-1596 
"ZNF676 WILD-TYPE" "ZNF676 WILD-TYPE"   "ZNF676 MUTATED" "ZNF676 WILD-TYPE" 
      TCGA-55-5899       TCGA-55-6543       TCGA-55-6642       TCGA-55-6712 
  "ZNF676 MUTATED" "ZNF676 WILD-TYPE" "ZNF676 WILD-TYPE" "ZNF676 WILD-TYPE" 
      TCGA-64-1676       TCGA-64-1677       TCGA-64-1678       TCGA-64-1680 
"ZNF676 WILD-TYPE" "ZNF676 WILD-TYPE" "ZNF676 WILD-TYPE" "ZNF676 WILD-TYPE" 
      TCGA-64-5774       TCGA-64-5775       TCGA-64-5778       TCGA-64-5779 
"ZNF676 WILD-TYPE" "ZNF676 WILD-TYPE" "ZNF676 WILD-TYPE" "ZNF676 WILD-TYPE" 
      TCGA-64-5781       TCGA-64-5815       TCGA-67-3770       TCGA-67-3771 
  "ZNF676 MUTATED" "ZNF676 WILD-TYPE" "ZNF676 WILD-TYPE"   "ZNF676 MUTATED" 
      TCGA-67-3772       TCGA-67-3773       TCGA-67-3774       TCGA-67-6215 
"ZNF676 WILD-TYPE" "ZNF676 WILD-TYPE" "ZNF676 WILD-TYPE" "ZNF676 WILD-TYPE" 
      TCGA-67-6216       TCGA-67-6217       TCGA-71-6725       TCGA-73-4658 
"ZNF676 WILD-TYPE" "ZNF676 WILD-TYPE" "ZNF676 WILD-TYPE"   "ZNF676 MUTATED" 
      TCGA-73-4659       TCGA-73-4662       TCGA-73-4666       TCGA-73-4668 
"ZNF676 WILD-TYPE" "ZNF676 WILD-TYPE" "ZNF676 WILD-TYPE"   "ZNF676 MUTATED" 
      TCGA-73-4670       TCGA-73-4675       TCGA-73-4676       TCGA-73-4677 
"ZNF676 WILD-TYPE" "ZNF676 WILD-TYPE" "ZNF676 WILD-TYPE" "ZNF676 WILD-TYPE" 
      TCGA-91-6828       TCGA-91-6829       TCGA-91-6831       TCGA-91-6835 
"ZNF676 WILD-TYPE" "ZNF676 WILD-TYPE" "ZNF676 WILD-TYPE" "ZNF676 WILD-TYPE" 
      TCGA-91-6836 
"ZNF676 WILD-TYPE" 
      TCGA-05-4249       TCGA-05-4250       TCGA-05-4382       TCGA-05-4384 
"ZNF676 WILD-TYPE" "ZNF676 WILD-TYPE"   "ZNF676 MUTATED" "ZNF676 WILD-TYPE" 
      TCGA-05-4390       TCGA-05-4396       TCGA-05-4397       TCGA-05-4398 
"ZNF676 WILD-TYPE" "ZNF676 WILD-TYPE" "ZNF676 WILD-TYPE" "ZNF676 WILD-TYPE" 
      TCGA-05-4402       TCGA-05-4405       TCGA-05-4415       TCGA-05-4417 
"ZNF676 WILD-TYPE" "ZNF676 WILD-TYPE" "ZNF676 WILD-TYPE"   "ZNF676 MUTATED" 
      TCGA-05-4418       TCGA-05-4420       TCGA-05-4424       TCGA-05-4426 
  "ZNF676 MUTATED" "ZNF676 WILD-TYPE"   "ZNF676 MUTATED" "ZNF676 WILD-TYPE" 
      TCGA-05-4427       TCGA-05-4430       TCGA-05-4432       TCGA-05-4433 
"ZNF676 WILD-TYPE" "ZNF676 WILD-TYPE" "ZNF676 WILD-TYPE" "ZNF676 WILD-TYPE" 
      TCGA-05-4434       TCGA-05-5420       TCGA-05-5423       TCGA-05-5425 
"ZNF676 WILD-TYPE" "ZNF676 WILD-TYPE" "ZNF676 WILD-TYPE" "ZNF676 WILD-TYPE" 
      TCGA-05-5429       TCGA-05-5715       TCGA-35-3615       TCGA-35-4122 
"ZNF676 WILD-TYPE" "ZNF676 WILD-TYPE" "ZNF676 WILD-TYPE" "ZNF676 WILD-TYPE" 
      TCGA-35-4123       TCGA-35-5375       TCGA-38-4625       TCGA-38-4626 
"ZNF676 WILD-TYPE" "ZNF676 WILD-TYPE" "ZNF676 WILD-TYPE" "ZNF676 WILD-TYPE" 
      TCGA-38-4627       TCGA-38-4628       TCGA-38-4629       TCGA-38-4630 
"ZNF676 WILD-TYPE" "ZNF676 WILD-TYPE" "ZNF676 WILD-TYPE" "ZNF676 WILD-TYPE" 
      TCGA-38-4631       TCGA-38-4632       TCGA-38-6178       TCGA-44-2655 
  "ZNF676 MUTATED" "ZNF676 WILD-TYPE" "ZNF676 WILD-TYPE" "ZNF676 WILD-TYPE" 
      TCGA-44-2656       TCGA-44-2657       TCGA-44-2659       TCGA-44-2661 
"ZNF676 WILD-TYPE" "ZNF676 WILD-TYPE" "ZNF676 WILD-TYPE" "ZNF676 WILD-TYPE" 
      TCGA-44-2662       TCGA-44-2665       TCGA-44-2666       TCGA-44-2668 
"ZNF676 WILD-TYPE" "ZNF676 WILD-TYPE" "ZNF676 WILD-TYPE" "ZNF676 WILD-TYPE" 
      TCGA-44-3396       TCGA-44-3398       TCGA-44-3918       TCGA-44-3919 
"ZNF676 WILD-TYPE" "ZNF676 WILD-TYPE" "ZNF676 WILD-TYPE" "ZNF676 WILD-TYPE" 
      TCGA-44-4112       TCGA-44-5643       TCGA-44-5645       TCGA-44-6144 
"ZNF676 WILD-TYPE" "ZNF676 WILD-TYPE" "ZNF676 WILD-TYPE"   "ZNF676 MUTATED" 
      TCGA-44-6145       TCGA-44-6146       TCGA-44-6147       TCGA-44-6148 
"ZNF676 WILD-TYPE" "ZNF676 WILD-TYPE" "ZNF676 WILD-TYPE" "ZNF676 WILD-TYPE" 
      TCGA-44-6774       TCGA-44-6775       TCGA-44-6776       TCGA-44-6777 
"ZNF676 WILD-TYPE" "ZNF676 WILD-TYPE" "ZNF676 WILD-TYPE"   "ZNF676 MUTATED" 
      TCGA-44-6778       TCGA-44-6779       TCGA-49-4486       TCGA-49-4487 
"ZNF676 WILD-TYPE" "ZNF676 WILD-TYPE" "ZNF676 WILD-TYPE" "ZNF676 WILD-TYPE" 
      TCGA-49-4488       TCGA-49-4490       TCGA-49-4494       TCGA-49-4501 
"ZNF676 WILD-TYPE" "ZNF676 WILD-TYPE" "ZNF676 WILD-TYPE" "ZNF676 WILD-TYPE" 
      TCGA-49-4505       TCGA-49-4506       TCGA-49-4507       TCGA-49-4510 
"ZNF676 WILD-TYPE" "ZNF676 WILD-TYPE" "ZNF676 WILD-TYPE" "ZNF676 WILD-TYPE" 
      TCGA-49-4512       TCGA-49-4514       TCGA-49-6742       TCGA-49-6743 
"ZNF676 WILD-TYPE" "ZNF676 WILD-TYPE" "ZNF676 WILD-TYPE" "ZNF676 WILD-TYPE" 
      TCGA-49-6744       TCGA-49-6745       TCGA-50-5044       TCGA-50-5045 
"ZNF676 WILD-TYPE" "ZNF676 WILD-TYPE" "ZNF676 WILD-TYPE" "ZNF676 WILD-TYPE" 
      TCGA-50-5049       TCGA-50-5051       TCGA-50-5055       TCGA-50-5066 
"ZNF676 WILD-TYPE" "ZNF676 WILD-TYPE" "ZNF676 WILD-TYPE" "ZNF676 WILD-TYPE" 
      TCGA-50-5068       TCGA-50-5072       TCGA-50-5930       TCGA-50-5931 
"ZNF676 WILD-TYPE" "ZNF676 WILD-TYPE" "ZNF676 WILD-TYPE"   "ZNF676 MUTATED" 
      TCGA-50-5932       TCGA-50-5933       TCGA-50-5935       TCGA-50-5936 
"ZNF676 WILD-TYPE" "ZNF676 WILD-TYPE" "ZNF676 WILD-TYPE" "ZNF676 WILD-TYPE" 
      TCGA-50-5939       TCGA-50-5941       TCGA-50-5942       TCGA-50-5944 
"ZNF676 WILD-TYPE" "ZNF676 WILD-TYPE" "ZNF676 WILD-TYPE" "ZNF676 WILD-TYPE" 
      TCGA-50-5946       TCGA-50-6590       TCGA-50-6591       TCGA-50-6592 
"ZNF676 WILD-TYPE" "ZNF676 WILD-TYPE" "ZNF676 WILD-TYPE" "ZNF676 WILD-TYPE" 
      TCGA-50-6593       TCGA-50-6594       TCGA-50-6595       TCGA-50-6597 
"ZNF676 WILD-TYPE" "ZNF676 WILD-TYPE" "ZNF676 WILD-TYPE" "ZNF676 WILD-TYPE" 
      TCGA-55-1592       TCGA-55-1594       TCGA-55-1595       TCGA-55-1596 
"ZNF676 WILD-TYPE" "ZNF676 WILD-TYPE"   "ZNF676 MUTATED" "ZNF676 WILD-TYPE" 
      TCGA-55-5899       TCGA-55-6543       TCGA-55-6642       TCGA-55-6712 
  "ZNF676 MUTATED" "ZNF676 WILD-TYPE" "ZNF676 WILD-TYPE" "ZNF676 WILD-TYPE" 
      TCGA-64-1676       TCGA-64-1677       TCGA-64-1678       TCGA-64-1680 
"ZNF676 WILD-TYPE" "ZNF676 WILD-TYPE" "ZNF676 WILD-TYPE" "ZNF676 WILD-TYPE" 
      TCGA-64-5774       TCGA-64-5775       TCGA-64-5778       TCGA-64-5779 
"ZNF676 WILD-TYPE" "ZNF676 WILD-TYPE" "ZNF676 WILD-TYPE" "ZNF676 WILD-TYPE" 
      TCGA-64-5781       TCGA-64-5815       TCGA-67-3770       TCGA-67-3771 
  "ZNF676 MUTATED" "ZNF676 WILD-TYPE" "ZNF676 WILD-TYPE"   "ZNF676 MUTATED" 
      TCGA-67-3772       TCGA-67-3773       TCGA-67-3774       TCGA-67-6215 
"ZNF676 WILD-TYPE" "ZNF676 WILD-TYPE" "ZNF676 WILD-TYPE" "ZNF676 WILD-TYPE" 
      TCGA-67-6216       TCGA-67-6217       TCGA-71-6725       TCGA-73-4658 
"ZNF676 WILD-TYPE" "ZNF676 WILD-TYPE" "ZNF676 WILD-TYPE"   "ZNF676 MUTATED" 
      TCGA-73-4659       TCGA-73-4662       TCGA-73-4666       TCGA-73-4668 
"ZNF676 WILD-TYPE" "ZNF676 WILD-TYPE" "ZNF676 WILD-TYPE"   "ZNF676 MUTATED" 
      TCGA-73-4670       TCGA-73-4675       TCGA-73-4676       TCGA-73-4677 
"ZNF676 WILD-TYPE" "ZNF676 WILD-TYPE" "ZNF676 WILD-TYPE" "ZNF676 WILD-TYPE" 
      TCGA-91-6828       TCGA-91-6829       TCGA-91-6831       TCGA-91-6835 
"ZNF676 WILD-TYPE" "ZNF676 WILD-TYPE" "ZNF676 WILD-TYPE" "ZNF676 WILD-TYPE" 
      TCGA-91-6836 
"ZNF676 WILD-TYPE" 
      TCGA-05-4249       TCGA-05-4250       TCGA-05-4382       TCGA-05-4384 
"ZNF676 WILD-TYPE" "ZNF676 WILD-TYPE"   "ZNF676 MUTATED" "ZNF676 WILD-TYPE" 
      TCGA-05-4390       TCGA-05-4396       TCGA-05-4397       TCGA-05-4398 
"ZNF676 WILD-TYPE" "ZNF676 WILD-TYPE" "ZNF676 WILD-TYPE" "ZNF676 WILD-TYPE" 
      TCGA-05-4402       TCGA-05-4405       TCGA-05-4415       TCGA-05-4417 
"ZNF676 WILD-TYPE" "ZNF676 WILD-TYPE" "ZNF676 WILD-TYPE"   "ZNF676 MUTATED" 
      TCGA-05-4418       TCGA-05-4420       TCGA-05-4424       TCGA-05-4426 
  "ZNF676 MUTATED" "ZNF676 WILD-TYPE"   "ZNF676 MUTATED" "ZNF676 WILD-TYPE" 
      TCGA-05-4427       TCGA-05-4430       TCGA-05-4432       TCGA-05-4433 
"ZNF676 WILD-TYPE" "ZNF676 WILD-TYPE" "ZNF676 WILD-TYPE" "ZNF676 WILD-TYPE" 
      TCGA-05-4434       TCGA-05-5420       TCGA-05-5423       TCGA-05-5425 
"ZNF676 WILD-TYPE" "ZNF676 WILD-TYPE" "ZNF676 WILD-TYPE" "ZNF676 WILD-TYPE" 
      TCGA-05-5429       TCGA-05-5715       TCGA-35-3615       TCGA-35-4122 
"ZNF676 WILD-TYPE" "ZNF676 WILD-TYPE" "ZNF676 WILD-TYPE" "ZNF676 WILD-TYPE" 
      TCGA-35-4123       TCGA-35-5375       TCGA-38-4625       TCGA-38-4626 
"ZNF676 WILD-TYPE" "ZNF676 WILD-TYPE" "ZNF676 WILD-TYPE" "ZNF676 WILD-TYPE" 
      TCGA-38-4627       TCGA-38-4628       TCGA-38-4629       TCGA-38-4630 
"ZNF676 WILD-TYPE" "ZNF676 WILD-TYPE" "ZNF676 WILD-TYPE" "ZNF676 WILD-TYPE" 
      TCGA-38-4631       TCGA-38-4632       TCGA-38-6178       TCGA-44-2655 
  "ZNF676 MUTATED" "ZNF676 WILD-TYPE" "ZNF676 WILD-TYPE" "ZNF676 WILD-TYPE" 
      TCGA-44-2656       TCGA-44-2657       TCGA-44-2659       TCGA-44-2661 
"ZNF676 WILD-TYPE" "ZNF676 WILD-TYPE" "ZNF676 WILD-TYPE" "ZNF676 WILD-TYPE" 
      TCGA-44-2662       TCGA-44-2665       TCGA-44-2666       TCGA-44-2668 
"ZNF676 WILD-TYPE" "ZNF676 WILD-TYPE" "ZNF676 WILD-TYPE" "ZNF676 WILD-TYPE" 
      TCGA-44-3396       TCGA-44-3398       TCGA-44-3918       TCGA-44-3919 
"ZNF676 WILD-TYPE" "ZNF676 WILD-TYPE" "ZNF676 WILD-TYPE" "ZNF676 WILD-TYPE" 
      TCGA-44-4112       TCGA-44-5643       TCGA-44-5645       TCGA-44-6144 
"ZNF676 WILD-TYPE" "ZNF676 WILD-TYPE" "ZNF676 WILD-TYPE"   "ZNF676 MUTATED" 
      TCGA-44-6145       TCGA-44-6146       TCGA-44-6147       TCGA-44-6148 
"ZNF676 WILD-TYPE" "ZNF676 WILD-TYPE" "ZNF676 WILD-TYPE" "ZNF676 WILD-TYPE" 
      TCGA-44-6774       TCGA-44-6775       TCGA-44-6776       TCGA-44-6777 
"ZNF676 WILD-TYPE" "ZNF676 WILD-TYPE" "ZNF676 WILD-TYPE"   "ZNF676 MUTATED" 
      TCGA-44-6778       TCGA-44-6779       TCGA-49-4486       TCGA-49-4487 
"ZNF676 WILD-TYPE" "ZNF676 WILD-TYPE" "ZNF676 WILD-TYPE" "ZNF676 WILD-TYPE" 
      TCGA-49-4488       TCGA-49-4490       TCGA-49-4494       TCGA-49-4501 
"ZNF676 WILD-TYPE" "ZNF676 WILD-TYPE" "ZNF676 WILD-TYPE" "ZNF676 WILD-TYPE" 
      TCGA-49-4505       TCGA-49-4506       TCGA-49-4507       TCGA-49-4510 
"ZNF676 WILD-TYPE" "ZNF676 WILD-TYPE" "ZNF676 WILD-TYPE" "ZNF676 WILD-TYPE" 
      TCGA-49-4512       TCGA-49-4514       TCGA-49-6742       TCGA-49-6743 
"ZNF676 WILD-TYPE" "ZNF676 WILD-TYPE" "ZNF676 WILD-TYPE" "ZNF676 WILD-TYPE" 
      TCGA-49-6744       TCGA-49-6745       TCGA-50-5044       TCGA-50-5045 
"ZNF676 WILD-TYPE" "ZNF676 WILD-TYPE" "ZNF676 WILD-TYPE" "ZNF676 WILD-TYPE" 
      TCGA-50-5049       TCGA-50-5051       TCGA-50-5055       TCGA-50-5066 
"ZNF676 WILD-TYPE" "ZNF676 WILD-TYPE" "ZNF676 WILD-TYPE" "ZNF676 WILD-TYPE" 
      TCGA-50-5068       TCGA-50-5072       TCGA-50-5930       TCGA-50-5931 
"ZNF676 WILD-TYPE" "ZNF676 WILD-TYPE" "ZNF676 WILD-TYPE"   "ZNF676 MUTATED" 
      TCGA-50-5932       TCGA-50-5933       TCGA-50-5935       TCGA-50-5936 
"ZNF676 WILD-TYPE" "ZNF676 WILD-TYPE" "ZNF676 WILD-TYPE" "ZNF676 WILD-TYPE" 
      TCGA-50-5939       TCGA-50-5941       TCGA-50-5942       TCGA-50-5944 
"ZNF676 WILD-TYPE" "ZNF676 WILD-TYPE" "ZNF676 WILD-TYPE" "ZNF676 WILD-TYPE" 
      TCGA-50-5946       TCGA-50-6590       TCGA-50-6591       TCGA-50-6592 
"ZNF676 WILD-TYPE" "ZNF676 WILD-TYPE" "ZNF676 WILD-TYPE" "ZNF676 WILD-TYPE" 
      TCGA-50-6593       TCGA-50-6594       TCGA-50-6595       TCGA-50-6597 
"ZNF676 WILD-TYPE" "ZNF676 WILD-TYPE" "ZNF676 WILD-TYPE" "ZNF676 WILD-TYPE" 
      TCGA-55-1592       TCGA-55-1594       TCGA-55-1595       TCGA-55-1596 
"ZNF676 WILD-TYPE" "ZNF676 WILD-TYPE"   "ZNF676 MUTATED" "ZNF676 WILD-TYPE" 
      TCGA-55-5899       TCGA-55-6543       TCGA-55-6642       TCGA-55-6712 
  "ZNF676 MUTATED" "ZNF676 WILD-TYPE" "ZNF676 WILD-TYPE" "ZNF676 WILD-TYPE" 
      TCGA-64-1676       TCGA-64-1677       TCGA-64-1678       TCGA-64-1680 
"ZNF676 WILD-TYPE" "ZNF676 WILD-TYPE" "ZNF676 WILD-TYPE" "ZNF676 WILD-TYPE" 
      TCGA-64-5774       TCGA-64-5775       TCGA-64-5778       TCGA-64-5779 
"ZNF676 WILD-TYPE" "ZNF676 WILD-TYPE" "ZNF676 WILD-TYPE" "ZNF676 WILD-TYPE" 
      TCGA-64-5781       TCGA-64-5815       TCGA-67-3770       TCGA-67-3771 
  "ZNF676 MUTATED" "ZNF676 WILD-TYPE" "ZNF676 WILD-TYPE"   "ZNF676 MUTATED" 
      TCGA-67-3772       TCGA-67-3773       TCGA-67-3774       TCGA-67-6215 
"ZNF676 WILD-TYPE" "ZNF676 WILD-TYPE" "ZNF676 WILD-TYPE" "ZNF676 WILD-TYPE" 
      TCGA-67-6216       TCGA-67-6217       TCGA-71-6725       TCGA-73-4658 
"ZNF676 WILD-TYPE" "ZNF676 WILD-TYPE" "ZNF676 WILD-TYPE"   "ZNF676 MUTATED" 
      TCGA-73-4659       TCGA-73-4662       TCGA-73-4666       TCGA-73-4668 
"ZNF676 WILD-TYPE" "ZNF676 WILD-TYPE" "ZNF676 WILD-TYPE"   "ZNF676 MUTATED" 
      TCGA-73-4670       TCGA-73-4675       TCGA-73-4676       TCGA-73-4677 
"ZNF676 WILD-TYPE" "ZNF676 WILD-TYPE" "ZNF676 WILD-TYPE" "ZNF676 WILD-TYPE" 
      TCGA-91-6828       TCGA-91-6829       TCGA-91-6831       TCGA-91-6835 
"ZNF676 WILD-TYPE" "ZNF676 WILD-TYPE" "ZNF676 WILD-TYPE" "ZNF676 WILD-TYPE" 
      TCGA-91-6836 
"ZNF676 WILD-TYPE" 
[1] "hr=" "1"  
D21V2, continuous
D21V3, binary
[1] "tbl2"
                  cls
clus               [,1] [,2]
  ZNF676 MUTATED      9    7
  ZNF676 WILD-TYPE   84   72
        clus
vv       ZNF676 MUTATED ZNF676 WILD-TYPE
  FEMALE              9               84
  MALE                7               72
D21V4, continuous
[1] "Remove cluster labels:" "ZNF676 MUTATED"        
clus
  ZNF676 MUTATED ZNF676 WILD-TYPE 
               1               11 
      TCGA-35-4122       TCGA-35-4123       TCGA-35-5375       TCGA-64-1677 
"ZNF676 WILD-TYPE" "ZNF676 WILD-TYPE" "ZNF676 WILD-TYPE" "ZNF676 WILD-TYPE" 
      TCGA-64-5778       TCGA-71-6725       TCGA-73-4659       TCGA-73-4662 
"ZNF676 WILD-TYPE" "ZNF676 WILD-TYPE" "ZNF676 WILD-TYPE" "ZNF676 WILD-TYPE" 
      TCGA-73-4666       TCGA-73-4676       TCGA-75-5122 
"ZNF676 WILD-TYPE" "ZNF676 WILD-TYPE" "ZNF676 WILD-TYPE" 
D21V5, multiclass
D21V6, multiclass
    clus
vv   ZNF676 MUTATED ZNF676 WILD-TYPE
  T1              4               37
  T2             10               98
  T3              2               12
  T4              0                8
D21V7, multiclass
       clus
vv      ZNF676 MUTATED ZNF676 WILD-TYPE
  N0                10               85
  N1                 2               35
  N2+N3              3               32
D21V8, multiclass
    clus
vv   ZNF676 MUTATED ZNF676 WILD-TYPE
  M0             14              123
  M1              1                8
  MX              1               21
D21V9, multiclass
     clus
vv    ZNF676 MUTATED ZNF676 WILD-TYPE
  I               11               77
  II               2               31
  III              2               37
  IV               1                8
D21V10, binary
[1] "tbl2"
                  cls
clus               [,1] [,2]
  ZNF676 MUTATED      1   15
  ZNF676 WILD-TYPE   15  141
     clus
vv    ZNF676 MUTATED ZNF676 WILD-TYPE
  NO               1               15
  YES             15              141
D21V11, continuous
D21V12, continuous
D21V13, multiclass
                                             clus
vv                                            ZNF676 MUTATED ZNF676 WILD-TYPE
  CURRENT REFORMED SMOKER FOR < OR = 15 YEARS             10               52
  CURRENT REFORMED SMOKER FOR > 15 YEARS                   2               44
  CURRENT SMOKER                                           3               25
  LIFELONG NON-SMOKER                                      0               24
D21V14, continuous

Clustering(22) Variable = BAGE2 MUTATION ANALYSIS
D22V1, survival
                 sevent
clus2              0  1
  BAGE2 MUTATED    2  5
  BAGE2 WILD-TYPE 97 45
  BAGE2 MUTATED BAGE2 WILD-TYPE 
              7             142 
  BAGE2 MUTATED BAGE2 WILD-TYPE 
              5              45 
$`BAGE2 MUTATED`
TCGA-05-4397 TCGA-50-5931 TCGA-50-5933 TCGA-50-6591 TCGA-50-6592 TCGA-64-5781 
       24.03         8.78        77.88         3.88        25.51        39.52 
TCGA-91-6831 
        1.28 

$`BAGE2 WILD-TYPE`
TCGA-05-4249 TCGA-05-4250 TCGA-05-4382 TCGA-05-4384 TCGA-05-4390 TCGA-05-4396 
       38.07         3.98        19.92        14.01        37.02         9.96 
TCGA-05-4398 TCGA-05-4402 TCGA-05-4405 TCGA-05-4415 TCGA-05-4417 TCGA-05-4418 
       47.05         8.02        20.05         2.96        14.93         8.98 
TCGA-05-4420 TCGA-05-4424 TCGA-05-4426 TCGA-05-4427 TCGA-05-4430 TCGA-05-4432 
       29.95        30.02        26.01        26.01        25.02        25.02 
TCGA-05-4433 TCGA-05-4434 TCGA-05-5420 TCGA-05-5423 TCGA-05-5425 TCGA-05-5429 
       24.00        15.02         1.02         4.96         2.96         0.99 
TCGA-05-5715 TCGA-35-3615 TCGA-35-4122 TCGA-35-4123 TCGA-35-5375 TCGA-38-4625 
        2.04         0.46         7.36         5.95         8.68        47.61 
TCGA-38-4626 TCGA-38-4627 TCGA-38-4628 TCGA-38-4629 TCGA-38-4630 TCGA-38-4631 
       85.32        37.71        49.02        28.37        35.28        11.64 
TCGA-38-4632 TCGA-38-6178 TCGA-44-2655 TCGA-44-2656 TCGA-44-2657 TCGA-44-2659 
       44.61         5.19        18.87        19.10        13.15        17.39 
TCGA-44-2661 TCGA-44-2662 TCGA-44-2665 TCGA-44-2666 TCGA-44-2668 TCGA-44-3396 
        3.39        15.78        13.15         3.19         8.09        10.22 
TCGA-44-3398 TCGA-44-3918 TCGA-44-3919 TCGA-44-4112 TCGA-44-5643 TCGA-44-5645 
        8.32         6.44         6.21         4.60         3.48         6.84 
TCGA-44-6144 TCGA-44-6145 TCGA-44-6146 TCGA-44-6147 TCGA-44-6148 TCGA-44-6774 
        0.30         3.35         9.93         7.76         3.12         5.42 
TCGA-44-6775 TCGA-44-6776 TCGA-44-6777 TCGA-44-6778 TCGA-44-6779 TCGA-49-4486 
        2.70        63.72        32.45        36.49        16.41        76.21 
TCGA-49-4487 TCGA-49-4488 TCGA-49-4490 TCGA-49-4494 TCGA-49-4501 TCGA-49-4505 
       28.11        28.57        12.66        35.54        46.72        14.07 
TCGA-49-4506 TCGA-49-4507 TCGA-49-4510 TCGA-49-4512 TCGA-49-4514 TCGA-49-6742 
       32.84         8.81        29.46        29.75        43.20        15.02 
TCGA-49-6743 TCGA-49-6744 TCGA-49-6745 TCGA-50-5044 TCGA-50-5045 TCGA-50-5049 
       12.13        12.99         4.93        20.48        71.47        48.82 
TCGA-50-5051 TCGA-50-5055 TCGA-50-5066 TCGA-50-5068 TCGA-50-5072 TCGA-50-5930 
       14.96        25.81         9.76        49.28         8.05         9.27 
TCGA-50-5932 TCGA-50-5935 TCGA-50-5936 TCGA-50-5939 TCGA-50-5941 TCGA-50-5942 
       35.87        21.47         8.45        15.12         9.37         4.44 
TCGA-50-5944 TCGA-50-5946 TCGA-50-6590 TCGA-50-6593 TCGA-50-6594 TCGA-50-6595 
       12.26        11.47        42.31        11.05        12.16         6.21 
TCGA-50-6597 TCGA-55-1592 TCGA-55-1594 TCGA-55-1595 TCGA-55-1596 TCGA-55-5899 
       33.37        23.05        38.73        48.62        45.17         2.86 
TCGA-55-6543 TCGA-55-6642 TCGA-55-6712 TCGA-64-1676 TCGA-64-1677 TCGA-64-1678 
        0.07        32.61         0.79        56.81        20.65        39.09 
TCGA-64-1680 TCGA-64-5774 TCGA-64-5775 TCGA-64-5778 TCGA-64-5779 TCGA-64-5815 
       37.02        83.84         0.10        30.44        16.67         7.33 
TCGA-67-3770 TCGA-67-3771 TCGA-67-3772 TCGA-67-3773 TCGA-67-3774 TCGA-67-6215 
        0.99         1.97         0.59         2.04         0.59         0.89 
TCGA-67-6216 TCGA-67-6217 TCGA-71-6725 TCGA-73-4658 TCGA-73-4659 TCGA-73-4662 
        0.69        13.87         2.01        52.57        23.38        29.95 
TCGA-73-4666 TCGA-73-4668 TCGA-73-4670 TCGA-73-4675 TCGA-73-4676 TCGA-73-4677 
       20.28        15.35         0.46         1.32         4.01         1.25 
TCGA-91-6828 TCGA-91-6829 TCGA-91-6835 TCGA-91-6836 
        1.22        41.33         1.15         0.36 

  BAGE2 MUTATED BAGE2 WILD-TYPE 
           1.28            0.07 
  BAGE2 MUTATED BAGE2 WILD-TYPE 
          77.88           85.32 
  BAGE2 MUTATED BAGE2 WILD-TYPE 
          24.03           13.51 
[1] "1.3 - 77.9 (24.0)" "0.1 - 85.3 (13.5)"
     TCGA-05-4249      TCGA-05-4250      TCGA-05-4382      TCGA-05-4384 
"BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" 
     TCGA-05-4390      TCGA-05-4396      TCGA-05-4397      TCGA-05-4398 
"BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE"   "BAGE2 MUTATED" "BAGE2 WILD-TYPE" 
     TCGA-05-4402      TCGA-05-4405      TCGA-05-4415      TCGA-05-4417 
"BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" 
     TCGA-05-4418      TCGA-05-4420      TCGA-05-4424      TCGA-05-4426 
"BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" 
     TCGA-05-4427      TCGA-05-4430      TCGA-05-4432      TCGA-05-4433 
"BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" 
     TCGA-05-4434      TCGA-05-5420      TCGA-05-5423      TCGA-05-5425 
"BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" 
     TCGA-05-5429      TCGA-05-5715      TCGA-35-3615      TCGA-35-4122 
"BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" 
     TCGA-35-4123      TCGA-35-5375      TCGA-38-4625      TCGA-38-4626 
"BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" 
     TCGA-38-4627      TCGA-38-4628      TCGA-38-4629      TCGA-38-4630 
"BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" 
     TCGA-38-4631      TCGA-38-4632      TCGA-38-6178      TCGA-44-2655 
"BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" 
     TCGA-44-2656      TCGA-44-2657      TCGA-44-2659      TCGA-44-2661 
"BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" 
     TCGA-44-2662      TCGA-44-2665      TCGA-44-2666      TCGA-44-2668 
"BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" 
     TCGA-44-3396      TCGA-44-3398      TCGA-44-3918      TCGA-44-3919 
"BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" 
     TCGA-44-4112      TCGA-44-5643      TCGA-44-5645      TCGA-44-6144 
"BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" 
     TCGA-44-6145      TCGA-44-6146      TCGA-44-6147      TCGA-44-6148 
"BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" 
     TCGA-44-6774      TCGA-44-6775      TCGA-44-6776      TCGA-44-6777 
"BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" 
     TCGA-44-6778      TCGA-44-6779      TCGA-49-4486      TCGA-49-4487 
"BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" 
     TCGA-49-4488      TCGA-49-4490      TCGA-49-4494      TCGA-49-4501 
"BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" 
     TCGA-49-4505      TCGA-49-4506      TCGA-49-4507      TCGA-49-4510 
"BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" 
     TCGA-49-4512      TCGA-49-4514      TCGA-49-6742      TCGA-49-6743 
"BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" 
     TCGA-49-6744      TCGA-49-6745      TCGA-50-5044      TCGA-50-5045 
"BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" 
     TCGA-50-5049      TCGA-50-5051      TCGA-50-5055      TCGA-50-5066 
"BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" 
     TCGA-50-5068      TCGA-50-5072      TCGA-50-5930      TCGA-50-5931 
"BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE"   "BAGE2 MUTATED" 
     TCGA-50-5932      TCGA-50-5933      TCGA-50-5935      TCGA-50-5936 
"BAGE2 WILD-TYPE"   "BAGE2 MUTATED" "BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" 
     TCGA-50-5939      TCGA-50-5941      TCGA-50-5942      TCGA-50-5944 
"BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" 
     TCGA-50-5946      TCGA-50-6590      TCGA-50-6591      TCGA-50-6592 
"BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE"   "BAGE2 MUTATED"   "BAGE2 MUTATED" 
     TCGA-50-6593      TCGA-50-6594      TCGA-50-6595      TCGA-50-6597 
"BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" 
     TCGA-55-1592      TCGA-55-1594      TCGA-55-1595      TCGA-55-1596 
"BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" 
     TCGA-55-5899      TCGA-55-6543      TCGA-55-6642      TCGA-55-6712 
"BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" 
     TCGA-64-1676      TCGA-64-1677      TCGA-64-1678      TCGA-64-1680 
"BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" 
     TCGA-64-5774      TCGA-64-5775      TCGA-64-5778      TCGA-64-5779 
"BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" 
     TCGA-64-5781      TCGA-64-5815      TCGA-67-3770      TCGA-67-3771 
  "BAGE2 MUTATED" "BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" 
     TCGA-67-3772      TCGA-67-3773      TCGA-67-3774      TCGA-67-6215 
"BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" 
     TCGA-67-6216      TCGA-67-6217      TCGA-71-6725      TCGA-73-4658 
"BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" 
     TCGA-73-4659      TCGA-73-4662      TCGA-73-4666      TCGA-73-4668 
"BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" 
     TCGA-73-4670      TCGA-73-4675      TCGA-73-4676      TCGA-73-4677 
"BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" 
     TCGA-91-6828      TCGA-91-6829      TCGA-91-6831      TCGA-91-6835 
"BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE"   "BAGE2 MUTATED" "BAGE2 WILD-TYPE" 
     TCGA-91-6836 
"BAGE2 WILD-TYPE" 
     TCGA-05-4249      TCGA-05-4250      TCGA-05-4382      TCGA-05-4384 
"BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" 
     TCGA-05-4390      TCGA-05-4396      TCGA-05-4397      TCGA-05-4398 
"BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE"   "BAGE2 MUTATED" "BAGE2 WILD-TYPE" 
     TCGA-05-4402      TCGA-05-4405      TCGA-05-4415      TCGA-05-4417 
"BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" 
     TCGA-05-4418      TCGA-05-4420      TCGA-05-4424      TCGA-05-4426 
"BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" 
     TCGA-05-4427      TCGA-05-4430      TCGA-05-4432      TCGA-05-4433 
"BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" 
     TCGA-05-4434      TCGA-05-5420      TCGA-05-5423      TCGA-05-5425 
"BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" 
     TCGA-05-5429      TCGA-05-5715      TCGA-35-3615      TCGA-35-4122 
"BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" 
     TCGA-35-4123      TCGA-35-5375      TCGA-38-4625      TCGA-38-4626 
"BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" 
     TCGA-38-4627      TCGA-38-4628      TCGA-38-4629      TCGA-38-4630 
"BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" 
     TCGA-38-4631      TCGA-38-4632      TCGA-38-6178      TCGA-44-2655 
"BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" 
     TCGA-44-2656      TCGA-44-2657      TCGA-44-2659      TCGA-44-2661 
"BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" 
     TCGA-44-2662      TCGA-44-2665      TCGA-44-2666      TCGA-44-2668 
"BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" 
     TCGA-44-3396      TCGA-44-3398      TCGA-44-3918      TCGA-44-3919 
"BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" 
     TCGA-44-4112      TCGA-44-5643      TCGA-44-5645      TCGA-44-6144 
"BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" 
     TCGA-44-6145      TCGA-44-6146      TCGA-44-6147      TCGA-44-6148 
"BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" 
     TCGA-44-6774      TCGA-44-6775      TCGA-44-6776      TCGA-44-6777 
"BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" 
     TCGA-44-6778      TCGA-44-6779      TCGA-49-4486      TCGA-49-4487 
"BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" 
     TCGA-49-4488      TCGA-49-4490      TCGA-49-4494      TCGA-49-4501 
"BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" 
     TCGA-49-4505      TCGA-49-4506      TCGA-49-4507      TCGA-49-4510 
"BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" 
     TCGA-49-4512      TCGA-49-4514      TCGA-49-6742      TCGA-49-6743 
"BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" 
     TCGA-49-6744      TCGA-49-6745      TCGA-50-5044      TCGA-50-5045 
"BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" 
     TCGA-50-5049      TCGA-50-5051      TCGA-50-5055      TCGA-50-5066 
"BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" 
     TCGA-50-5068      TCGA-50-5072      TCGA-50-5930      TCGA-50-5931 
"BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE"   "BAGE2 MUTATED" 
     TCGA-50-5932      TCGA-50-5933      TCGA-50-5935      TCGA-50-5936 
"BAGE2 WILD-TYPE"   "BAGE2 MUTATED" "BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" 
     TCGA-50-5939      TCGA-50-5941      TCGA-50-5942      TCGA-50-5944 
"BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" 
     TCGA-50-5946      TCGA-50-6590      TCGA-50-6591      TCGA-50-6592 
"BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE"   "BAGE2 MUTATED"   "BAGE2 MUTATED" 
     TCGA-50-6593      TCGA-50-6594      TCGA-50-6595      TCGA-50-6597 
"BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" 
     TCGA-55-1592      TCGA-55-1594      TCGA-55-1595      TCGA-55-1596 
"BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" 
     TCGA-55-5899      TCGA-55-6543      TCGA-55-6642      TCGA-55-6712 
"BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" 
     TCGA-64-1676      TCGA-64-1677      TCGA-64-1678      TCGA-64-1680 
"BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" 
     TCGA-64-5774      TCGA-64-5775      TCGA-64-5778      TCGA-64-5779 
"BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" 
     TCGA-64-5781      TCGA-64-5815      TCGA-67-3770      TCGA-67-3771 
  "BAGE2 MUTATED" "BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" 
     TCGA-67-3772      TCGA-67-3773      TCGA-67-3774      TCGA-67-6215 
"BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" 
     TCGA-67-6216      TCGA-67-6217      TCGA-71-6725      TCGA-73-4658 
"BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" 
     TCGA-73-4659      TCGA-73-4662      TCGA-73-4666      TCGA-73-4668 
"BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" 
     TCGA-73-4670      TCGA-73-4675      TCGA-73-4676      TCGA-73-4677 
"BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" 
     TCGA-91-6828      TCGA-91-6829      TCGA-91-6831      TCGA-91-6835 
"BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE"   "BAGE2 MUTATED" "BAGE2 WILD-TYPE" 
     TCGA-91-6836 
"BAGE2 WILD-TYPE" 
     TCGA-05-4249      TCGA-05-4250      TCGA-05-4382      TCGA-05-4384 
"BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" 
     TCGA-05-4390      TCGA-05-4396      TCGA-05-4397      TCGA-05-4398 
"BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE"   "BAGE2 MUTATED" "BAGE2 WILD-TYPE" 
     TCGA-05-4402      TCGA-05-4405      TCGA-05-4415      TCGA-05-4417 
"BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" 
     TCGA-05-4418      TCGA-05-4420      TCGA-05-4424      TCGA-05-4426 
"BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" 
     TCGA-05-4427      TCGA-05-4430      TCGA-05-4432      TCGA-05-4433 
"BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" 
     TCGA-05-4434      TCGA-05-5420      TCGA-05-5423      TCGA-05-5425 
"BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" 
     TCGA-05-5429      TCGA-05-5715      TCGA-35-3615      TCGA-35-4122 
"BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" 
     TCGA-35-4123      TCGA-35-5375      TCGA-38-4625      TCGA-38-4626 
"BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" 
     TCGA-38-4627      TCGA-38-4628      TCGA-38-4629      TCGA-38-4630 
"BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" 
     TCGA-38-4631      TCGA-38-4632      TCGA-38-6178      TCGA-44-2655 
"BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" 
     TCGA-44-2656      TCGA-44-2657      TCGA-44-2659      TCGA-44-2661 
"BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" 
     TCGA-44-2662      TCGA-44-2665      TCGA-44-2666      TCGA-44-2668 
"BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" 
     TCGA-44-3396      TCGA-44-3398      TCGA-44-3918      TCGA-44-3919 
"BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" 
     TCGA-44-4112      TCGA-44-5643      TCGA-44-5645      TCGA-44-6144 
"BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" 
     TCGA-44-6145      TCGA-44-6146      TCGA-44-6147      TCGA-44-6148 
"BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" 
     TCGA-44-6774      TCGA-44-6775      TCGA-44-6776      TCGA-44-6777 
"BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" 
     TCGA-44-6778      TCGA-44-6779      TCGA-49-4486      TCGA-49-4487 
"BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" 
     TCGA-49-4488      TCGA-49-4490      TCGA-49-4494      TCGA-49-4501 
"BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" 
     TCGA-49-4505      TCGA-49-4506      TCGA-49-4507      TCGA-49-4510 
"BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" 
     TCGA-49-4512      TCGA-49-4514      TCGA-49-6742      TCGA-49-6743 
"BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" 
     TCGA-49-6744      TCGA-49-6745      TCGA-50-5044      TCGA-50-5045 
"BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" 
     TCGA-50-5049      TCGA-50-5051      TCGA-50-5055      TCGA-50-5066 
"BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" 
     TCGA-50-5068      TCGA-50-5072      TCGA-50-5930      TCGA-50-5931 
"BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE"   "BAGE2 MUTATED" 
     TCGA-50-5932      TCGA-50-5933      TCGA-50-5935      TCGA-50-5936 
"BAGE2 WILD-TYPE"   "BAGE2 MUTATED" "BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" 
     TCGA-50-5939      TCGA-50-5941      TCGA-50-5942      TCGA-50-5944 
"BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" 
     TCGA-50-5946      TCGA-50-6590      TCGA-50-6591      TCGA-50-6592 
"BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE"   "BAGE2 MUTATED"   "BAGE2 MUTATED" 
     TCGA-50-6593      TCGA-50-6594      TCGA-50-6595      TCGA-50-6597 
"BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" 
     TCGA-55-1592      TCGA-55-1594      TCGA-55-1595      TCGA-55-1596 
"BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" 
     TCGA-55-5899      TCGA-55-6543      TCGA-55-6642      TCGA-55-6712 
"BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" 
     TCGA-64-1676      TCGA-64-1677      TCGA-64-1678      TCGA-64-1680 
"BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" 
     TCGA-64-5774      TCGA-64-5775      TCGA-64-5778      TCGA-64-5779 
"BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" 
     TCGA-64-5781      TCGA-64-5815      TCGA-67-3770      TCGA-67-3771 
  "BAGE2 MUTATED" "BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" 
     TCGA-67-3772      TCGA-67-3773      TCGA-67-3774      TCGA-67-6215 
"BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" 
     TCGA-67-6216      TCGA-67-6217      TCGA-71-6725      TCGA-73-4658 
"BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" 
     TCGA-73-4659      TCGA-73-4662      TCGA-73-4666      TCGA-73-4668 
"BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" 
     TCGA-73-4670      TCGA-73-4675      TCGA-73-4676      TCGA-73-4677 
"BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" 
     TCGA-91-6828      TCGA-91-6829      TCGA-91-6831      TCGA-91-6835 
"BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE"   "BAGE2 MUTATED" "BAGE2 WILD-TYPE" 
     TCGA-91-6836 
"BAGE2 WILD-TYPE" 
[1] "hr=" "1.5"
D22V2, continuous
D22V3, binary
[1] "tbl2"
                 cls
clus              [,1] [,2]
  BAGE2 MUTATED      4    5
  BAGE2 WILD-TYPE   89   74
        clus
vv       BAGE2 MUTATED BAGE2 WILD-TYPE
  FEMALE             4              89
  MALE               5              74
D22V4, continuous
D22V5, multiclass
D22V6, multiclass
    clus
vv   BAGE2 MUTATED BAGE2 WILD-TYPE
  T1             0              41
  T2             7             101
  T3             1              13
  T4             1               7
D22V7, multiclass
       clus
vv      BAGE2 MUTATED BAGE2 WILD-TYPE
  N0                7              88
  N1                1              36
  N2+N3             1              34
D22V8, multiclass
    clus
vv   BAGE2 MUTATED BAGE2 WILD-TYPE
  M0             7             130
  M1             1               8
  MX             1              21
D22V9, multiclass
     clus
vv    BAGE2 MUTATED BAGE2 WILD-TYPE
  I               6              82
  II              1              32
  III             1              38
  IV              1               8
D22V10, binary
[1] "tbl2"
                 cls
clus              [,1] [,2]
  BAGE2 MUTATED      1    8
  BAGE2 WILD-TYPE   15  148
     clus
vv    BAGE2 MUTATED BAGE2 WILD-TYPE
  NO              1              15
  YES             8             148
D22V11, continuous
D22V12, continuous
[1] "Remove cluster labels:" "BAGE2 MUTATED"         
clus
  BAGE2 MUTATED BAGE2 WILD-TYPE 
              2              80 
     TCGA-05-4384      TCGA-05-4390      TCGA-05-4396      TCGA-05-4403 
"BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" 
     TCGA-05-4405      TCGA-05-4410      TCGA-05-4415      TCGA-05-4417 
"BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" 
     TCGA-05-4424      TCGA-05-4427      TCGA-05-4433      TCGA-05-5420 
"BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" 
     TCGA-05-5423      TCGA-05-5425      TCGA-05-5428      TCGA-35-4122 
"BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" 
     TCGA-35-4123      TCGA-35-5375      TCGA-38-4629      TCGA-38-4632 
"BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" 
     TCGA-44-2655      TCGA-44-2656      TCGA-44-2657      TCGA-44-2659 
"BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" 
     TCGA-44-2662      TCGA-44-2668      TCGA-44-3398      TCGA-44-3918 
"BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" 
     TCGA-44-4112      TCGA-44-5645      TCGA-44-6145      TCGA-44-6146 
"BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" 
     TCGA-44-6147      TCGA-44-6148      TCGA-44-6775      TCGA-44-6776 
"BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" 
     TCGA-44-6777      TCGA-44-6778      TCGA-44-6779      TCGA-49-4486 
"BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" 
     TCGA-49-4488      TCGA-49-4494      TCGA-49-4505      TCGA-49-4507 
"BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" 
     TCGA-50-5051      TCGA-50-5072      TCGA-50-5939      TCGA-50-5942 
"BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" 
     TCGA-50-5946      TCGA-50-6590      TCGA-50-6594      TCGA-50-6595 
"BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" 
     TCGA-55-1592      TCGA-55-1595      TCGA-55-6543      TCGA-55-6712 
"BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" 
     TCGA-64-1678      TCGA-64-1680      TCGA-64-5774      TCGA-64-5778 
"BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" 
     TCGA-64-5779      TCGA-64-5815      TCGA-67-6217      TCGA-73-4659 
"BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" 
     TCGA-73-4662      TCGA-73-4666      TCGA-73-4668      TCGA-73-4670 
"BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" 
     TCGA-73-4675      TCGA-73-4676      TCGA-73-4677      TCGA-75-5122 
"BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" 
     TCGA-75-5125      TCGA-75-5126      TCGA-75-5146      TCGA-75-6206 
"BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" 
     TCGA-75-6207      TCGA-91-6828      TCGA-91-6829      TCGA-91-6835 
"BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" 
D22V13, multiclass
                                             clus
vv                                            BAGE2 MUTATED BAGE2 WILD-TYPE
  CURRENT REFORMED SMOKER FOR < OR = 15 YEARS             4              58
  CURRENT REFORMED SMOKER FOR > 15 YEARS                  0              46
  CURRENT SMOKER                                          2              26
  LIFELONG NON-SMOKER                                     1              23
D22V14, continuous
[1] "Remove cluster labels:" "BAGE2 MUTATED"         
clus
  BAGE2 MUTATED BAGE2 WILD-TYPE 
              1              67 
     TCGA-05-4384      TCGA-05-4390      TCGA-05-4396      TCGA-05-4405 
"BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" 
     TCGA-05-4410      TCGA-05-4415      TCGA-05-4417      TCGA-05-4424 
"BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" 
     TCGA-05-4427      TCGA-05-4433      TCGA-05-5420      TCGA-05-5423 
"BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" 
     TCGA-05-5425      TCGA-05-5428      TCGA-35-4122      TCGA-35-4123 
"BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" 
     TCGA-35-5375      TCGA-38-4625      TCGA-38-4626      TCGA-44-2655 
"BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" 
     TCGA-44-2656      TCGA-44-2657      TCGA-44-2659      TCGA-44-2662 
"BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" 
     TCGA-44-2666      TCGA-44-2668      TCGA-44-3396      TCGA-44-3398 
"BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" 
     TCGA-44-3918      TCGA-44-4112      TCGA-44-5645      TCGA-44-6144 
"BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" 
     TCGA-44-6145      TCGA-44-6147      TCGA-44-6148      TCGA-44-6774 
"BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" 
     TCGA-44-6775      TCGA-44-6776      TCGA-44-6777      TCGA-44-6778 
"BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" 
     TCGA-44-6779      TCGA-49-4486      TCGA-49-4494      TCGA-49-4505 
"BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" 
     TCGA-55-1592      TCGA-55-1594      TCGA-55-1595      TCGA-55-1596 
"BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" 
     TCGA-55-5899      TCGA-55-6642      TCGA-55-6712      TCGA-64-1677 
"BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" 
     TCGA-64-1678      TCGA-64-1680      TCGA-64-5774      TCGA-64-5775 
"BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" 
     TCGA-64-5778      TCGA-64-5779      TCGA-73-4659      TCGA-73-4662 
"BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" 
     TCGA-73-4666      TCGA-73-4668      TCGA-73-4670      TCGA-73-4675 
"BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" 
     TCGA-73-4676      TCGA-91-6829      TCGA-91-6836 
"BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" 

Clustering(23) Variable = OR4A5 MUTATION ANALYSIS
D23V1, survival
                 sevent
clus2              0  1
  OR4A5 MUTATED    8  4
  OR4A5 WILD-TYPE 91 46
  OR4A5 MUTATED OR4A5 WILD-TYPE 
             12             137 
  OR4A5 MUTATED OR4A5 WILD-TYPE 
              4              46 
$`OR4A5 MUTATED`
TCGA-35-5375 TCGA-38-4631 TCGA-44-2659 TCGA-44-3396 TCGA-49-6743 TCGA-49-6744 
        8.68        11.64        17.39        10.22        12.13        12.99 
TCGA-50-5930 TCGA-50-6594 TCGA-64-1677 TCGA-67-6215 TCGA-73-4670 TCGA-91-6836 
        9.27        12.16        20.65         0.89         0.46         0.36 

$`OR4A5 WILD-TYPE`
TCGA-05-4249 TCGA-05-4250 TCGA-05-4382 TCGA-05-4384 TCGA-05-4390 TCGA-05-4396 
       38.07         3.98        19.92        14.01        37.02         9.96 
TCGA-05-4397 TCGA-05-4398 TCGA-05-4402 TCGA-05-4405 TCGA-05-4415 TCGA-05-4417 
       24.03        47.05         8.02        20.05         2.96        14.93 
TCGA-05-4418 TCGA-05-4420 TCGA-05-4424 TCGA-05-4426 TCGA-05-4427 TCGA-05-4430 
        8.98        29.95        30.02        26.01        26.01        25.02 
TCGA-05-4432 TCGA-05-4433 TCGA-05-4434 TCGA-05-5420 TCGA-05-5423 TCGA-05-5425 
       25.02        24.00        15.02         1.02         4.96         2.96 
TCGA-05-5429 TCGA-05-5715 TCGA-35-3615 TCGA-35-4122 TCGA-35-4123 TCGA-38-4625 
        0.99         2.04         0.46         7.36         5.95        47.61 
TCGA-38-4626 TCGA-38-4627 TCGA-38-4628 TCGA-38-4629 TCGA-38-4630 TCGA-38-4632 
       85.32        37.71        49.02        28.37        35.28        44.61 
TCGA-38-6178 TCGA-44-2655 TCGA-44-2656 TCGA-44-2657 TCGA-44-2661 TCGA-44-2662 
        5.19        18.87        19.10        13.15         3.39        15.78 
TCGA-44-2665 TCGA-44-2666 TCGA-44-2668 TCGA-44-3398 TCGA-44-3918 TCGA-44-3919 
       13.15         3.19         8.09         8.32         6.44         6.21 
TCGA-44-4112 TCGA-44-5643 TCGA-44-5645 TCGA-44-6144 TCGA-44-6145 TCGA-44-6146 
        4.60         3.48         6.84         0.30         3.35         9.93 
TCGA-44-6147 TCGA-44-6148 TCGA-44-6774 TCGA-44-6775 TCGA-44-6776 TCGA-44-6777 
        7.76         3.12         5.42         2.70        63.72        32.45 
TCGA-44-6778 TCGA-44-6779 TCGA-49-4486 TCGA-49-4487 TCGA-49-4488 TCGA-49-4490 
       36.49        16.41        76.21        28.11        28.57        12.66 
TCGA-49-4494 TCGA-49-4501 TCGA-49-4505 TCGA-49-4506 TCGA-49-4507 TCGA-49-4510 
       35.54        46.72        14.07        32.84         8.81        29.46 
TCGA-49-4512 TCGA-49-4514 TCGA-49-6742 TCGA-49-6745 TCGA-50-5044 TCGA-50-5045 
       29.75        43.20        15.02         4.93        20.48        71.47 
TCGA-50-5049 TCGA-50-5051 TCGA-50-5055 TCGA-50-5066 TCGA-50-5068 TCGA-50-5072 
       48.82        14.96        25.81         9.76        49.28         8.05 
TCGA-50-5931 TCGA-50-5932 TCGA-50-5933 TCGA-50-5935 TCGA-50-5936 TCGA-50-5939 
        8.78        35.87        77.88        21.47         8.45        15.12 
TCGA-50-5941 TCGA-50-5942 TCGA-50-5944 TCGA-50-5946 TCGA-50-6590 TCGA-50-6591 
        9.37         4.44        12.26        11.47        42.31         3.88 
TCGA-50-6592 TCGA-50-6593 TCGA-50-6595 TCGA-50-6597 TCGA-55-1592 TCGA-55-1594 
       25.51        11.05         6.21        33.37        23.05        38.73 
TCGA-55-1595 TCGA-55-1596 TCGA-55-5899 TCGA-55-6543 TCGA-55-6642 TCGA-55-6712 
       48.62        45.17         2.86         0.07        32.61         0.79 
TCGA-64-1676 TCGA-64-1678 TCGA-64-1680 TCGA-64-5774 TCGA-64-5775 TCGA-64-5778 
       56.81        39.09        37.02        83.84         0.10        30.44 
TCGA-64-5779 TCGA-64-5781 TCGA-64-5815 TCGA-67-3770 TCGA-67-3771 TCGA-67-3772 
       16.67        39.52         7.33         0.99         1.97         0.59 
TCGA-67-3773 TCGA-67-3774 TCGA-67-6216 TCGA-67-6217 TCGA-71-6725 TCGA-73-4658 
        2.04         0.59         0.69        13.87         2.01        52.57 
TCGA-73-4659 TCGA-73-4662 TCGA-73-4666 TCGA-73-4668 TCGA-73-4675 TCGA-73-4676 
       23.38        29.95        20.28        15.35         1.32         4.01 
TCGA-73-4677 TCGA-91-6828 TCGA-91-6829 TCGA-91-6831 TCGA-91-6835 
        1.25         1.22        41.33         1.28         1.15 

  OR4A5 MUTATED OR4A5 WILD-TYPE 
           0.36            0.07 
  OR4A5 MUTATED OR4A5 WILD-TYPE 
          20.65           85.32 
  OR4A5 MUTATED OR4A5 WILD-TYPE 
          10.93           14.96 
[1] "0.4 - 20.6 (10.9)" "0.1 - 85.3 (15.0)"
     TCGA-05-4249      TCGA-05-4250      TCGA-05-4382      TCGA-05-4384 
"OR4A5 WILD-TYPE" "OR4A5 WILD-TYPE" "OR4A5 WILD-TYPE" "OR4A5 WILD-TYPE" 
     TCGA-05-4390      TCGA-05-4396      TCGA-05-4397      TCGA-05-4398 
"OR4A5 WILD-TYPE" "OR4A5 WILD-TYPE" "OR4A5 WILD-TYPE" "OR4A5 WILD-TYPE" 
     TCGA-05-4402      TCGA-05-4405      TCGA-05-4415      TCGA-05-4417 
"OR4A5 WILD-TYPE" "OR4A5 WILD-TYPE" "OR4A5 WILD-TYPE" "OR4A5 WILD-TYPE" 
     TCGA-05-4418      TCGA-05-4420      TCGA-05-4424      TCGA-05-4426 
"OR4A5 WILD-TYPE" "OR4A5 WILD-TYPE" "OR4A5 WILD-TYPE" "OR4A5 WILD-TYPE" 
     TCGA-05-4427      TCGA-05-4430      TCGA-05-4432      TCGA-05-4433 
"OR4A5 WILD-TYPE" "OR4A5 WILD-TYPE" "OR4A5 WILD-TYPE" "OR4A5 WILD-TYPE" 
     TCGA-05-4434      TCGA-05-5420      TCGA-05-5423      TCGA-05-5425 
"OR4A5 WILD-TYPE" "OR4A5 WILD-TYPE" "OR4A5 WILD-TYPE" "OR4A5 WILD-TYPE" 
     TCGA-05-5429      TCGA-05-5715      TCGA-35-3615      TCGA-35-4122 
"OR4A5 WILD-TYPE" "OR4A5 WILD-TYPE" "OR4A5 WILD-TYPE" "OR4A5 WILD-TYPE" 
     TCGA-35-4123      TCGA-35-5375      TCGA-38-4625      TCGA-38-4626 
"OR4A5 WILD-TYPE"   "OR4A5 MUTATED" "OR4A5 WILD-TYPE" "OR4A5 WILD-TYPE" 
     TCGA-38-4627      TCGA-38-4628      TCGA-38-4629      TCGA-38-4630 
"OR4A5 WILD-TYPE" "OR4A5 WILD-TYPE" "OR4A5 WILD-TYPE" "OR4A5 WILD-TYPE" 
     TCGA-38-4631      TCGA-38-4632      TCGA-38-6178      TCGA-44-2655 
  "OR4A5 MUTATED" "OR4A5 WILD-TYPE" "OR4A5 WILD-TYPE" "OR4A5 WILD-TYPE" 
     TCGA-44-2656      TCGA-44-2657      TCGA-44-2659      TCGA-44-2661 
"OR4A5 WILD-TYPE" "OR4A5 WILD-TYPE"   "OR4A5 MUTATED" "OR4A5 WILD-TYPE" 
     TCGA-44-2662      TCGA-44-2665      TCGA-44-2666      TCGA-44-2668 
"OR4A5 WILD-TYPE" "OR4A5 WILD-TYPE" "OR4A5 WILD-TYPE" "OR4A5 WILD-TYPE" 
     TCGA-44-3396      TCGA-44-3398      TCGA-44-3918      TCGA-44-3919 
  "OR4A5 MUTATED" "OR4A5 WILD-TYPE" "OR4A5 WILD-TYPE" "OR4A5 WILD-TYPE" 
     TCGA-44-4112      TCGA-44-5643      TCGA-44-5645      TCGA-44-6144 
"OR4A5 WILD-TYPE" "OR4A5 WILD-TYPE" "OR4A5 WILD-TYPE" "OR4A5 WILD-TYPE" 
     TCGA-44-6145      TCGA-44-6146      TCGA-44-6147      TCGA-44-6148 
"OR4A5 WILD-TYPE" "OR4A5 WILD-TYPE" "OR4A5 WILD-TYPE" "OR4A5 WILD-TYPE" 
     TCGA-44-6774      TCGA-44-6775      TCGA-44-6776      TCGA-44-6777 
"OR4A5 WILD-TYPE" "OR4A5 WILD-TYPE" "OR4A5 WILD-TYPE" "OR4A5 WILD-TYPE" 
     TCGA-44-6778      TCGA-44-6779      TCGA-49-4486      TCGA-49-4487 
"OR4A5 WILD-TYPE" "OR4A5 WILD-TYPE" "OR4A5 WILD-TYPE" "OR4A5 WILD-TYPE" 
     TCGA-49-4488      TCGA-49-4490      TCGA-49-4494      TCGA-49-4501 
"OR4A5 WILD-TYPE" "OR4A5 WILD-TYPE" "OR4A5 WILD-TYPE" "OR4A5 WILD-TYPE" 
     TCGA-49-4505      TCGA-49-4506      TCGA-49-4507      TCGA-49-4510 
"OR4A5 WILD-TYPE" "OR4A5 WILD-TYPE" "OR4A5 WILD-TYPE" "OR4A5 WILD-TYPE" 
     TCGA-49-4512      TCGA-49-4514      TCGA-49-6742      TCGA-49-6743 
"OR4A5 WILD-TYPE" "OR4A5 WILD-TYPE" "OR4A5 WILD-TYPE"   "OR4A5 MUTATED" 
     TCGA-49-6744      TCGA-49-6745      TCGA-50-5044      TCGA-50-5045 
  "OR4A5 MUTATED" "OR4A5 WILD-TYPE" "OR4A5 WILD-TYPE" "OR4A5 WILD-TYPE" 
     TCGA-50-5049      TCGA-50-5051      TCGA-50-5055      TCGA-50-5066 
"OR4A5 WILD-TYPE" "OR4A5 WILD-TYPE" "OR4A5 WILD-TYPE" "OR4A5 WILD-TYPE" 
     TCGA-50-5068      TCGA-50-5072      TCGA-50-5930      TCGA-50-5931 
"OR4A5 WILD-TYPE" "OR4A5 WILD-TYPE"   "OR4A5 MUTATED" "OR4A5 WILD-TYPE" 
     TCGA-50-5932      TCGA-50-5933      TCGA-50-5935      TCGA-50-5936 
"OR4A5 WILD-TYPE" "OR4A5 WILD-TYPE" "OR4A5 WILD-TYPE" "OR4A5 WILD-TYPE" 
     TCGA-50-5939      TCGA-50-5941      TCGA-50-5942      TCGA-50-5944 
"OR4A5 WILD-TYPE" "OR4A5 WILD-TYPE" "OR4A5 WILD-TYPE" "OR4A5 WILD-TYPE" 
     TCGA-50-5946      TCGA-50-6590      TCGA-50-6591      TCGA-50-6592 
"OR4A5 WILD-TYPE" "OR4A5 WILD-TYPE" "OR4A5 WILD-TYPE" "OR4A5 WILD-TYPE" 
     TCGA-50-6593      TCGA-50-6594      TCGA-50-6595      TCGA-50-6597 
"OR4A5 WILD-TYPE"   "OR4A5 MUTATED" "OR4A5 WILD-TYPE" "OR4A5 WILD-TYPE" 
     TCGA-55-1592      TCGA-55-1594      TCGA-55-1595      TCGA-55-1596 
"OR4A5 WILD-TYPE" "OR4A5 WILD-TYPE" "OR4A5 WILD-TYPE" "OR4A5 WILD-TYPE" 
     TCGA-55-5899      TCGA-55-6543      TCGA-55-6642      TCGA-55-6712 
"OR4A5 WILD-TYPE" "OR4A5 WILD-TYPE" "OR4A5 WILD-TYPE" "OR4A5 WILD-TYPE" 
     TCGA-64-1676      TCGA-64-1677      TCGA-64-1678      TCGA-64-1680 
"OR4A5 WILD-TYPE"   "OR4A5 MUTATED" "OR4A5 WILD-TYPE" "OR4A5 WILD-TYPE" 
     TCGA-64-5774      TCGA-64-5775      TCGA-64-5778      TCGA-64-5779 
"OR4A5 WILD-TYPE" "OR4A5 WILD-TYPE" "OR4A5 WILD-TYPE" "OR4A5 WILD-TYPE" 
     TCGA-64-5781      TCGA-64-5815      TCGA-67-3770      TCGA-67-3771 
"OR4A5 WILD-TYPE" "OR4A5 WILD-TYPE" "OR4A5 WILD-TYPE" "OR4A5 WILD-TYPE" 
     TCGA-67-3772      TCGA-67-3773      TCGA-67-3774      TCGA-67-6215 
"OR4A5 WILD-TYPE" "OR4A5 WILD-TYPE" "OR4A5 WILD-TYPE"   "OR4A5 MUTATED" 
     TCGA-67-6216      TCGA-67-6217      TCGA-71-6725      TCGA-73-4658 
"OR4A5 WILD-TYPE" "OR4A5 WILD-TYPE" "OR4A5 WILD-TYPE" "OR4A5 WILD-TYPE" 
     TCGA-73-4659      TCGA-73-4662      TCGA-73-4666      TCGA-73-4668 
"OR4A5 WILD-TYPE" "OR4A5 WILD-TYPE" "OR4A5 WILD-TYPE" "OR4A5 WILD-TYPE" 
     TCGA-73-4670      TCGA-73-4675      TCGA-73-4676      TCGA-73-4677 
  "OR4A5 MUTATED" "OR4A5 WILD-TYPE" "OR4A5 WILD-TYPE" "OR4A5 WILD-TYPE" 
     TCGA-91-6828      TCGA-91-6829      TCGA-91-6831      TCGA-91-6835 
"OR4A5 WILD-TYPE" "OR4A5 WILD-TYPE" "OR4A5 WILD-TYPE" "OR4A5 WILD-TYPE" 
     TCGA-91-6836 
  "OR4A5 MUTATED" 
     TCGA-05-4249      TCGA-05-4250      TCGA-05-4382      TCGA-05-4384 
"OR4A5 WILD-TYPE" "OR4A5 WILD-TYPE" "OR4A5 WILD-TYPE" "OR4A5 WILD-TYPE" 
     TCGA-05-4390      TCGA-05-4396      TCGA-05-4397      TCGA-05-4398 
"OR4A5 WILD-TYPE" "OR4A5 WILD-TYPE" "OR4A5 WILD-TYPE" "OR4A5 WILD-TYPE" 
     TCGA-05-4402      TCGA-05-4405      TCGA-05-4415      TCGA-05-4417 
"OR4A5 WILD-TYPE" "OR4A5 WILD-TYPE" "OR4A5 WILD-TYPE" "OR4A5 WILD-TYPE" 
     TCGA-05-4418      TCGA-05-4420      TCGA-05-4424      TCGA-05-4426 
"OR4A5 WILD-TYPE" "OR4A5 WILD-TYPE" "OR4A5 WILD-TYPE" "OR4A5 WILD-TYPE" 
     TCGA-05-4427      TCGA-05-4430      TCGA-05-4432      TCGA-05-4433 
"OR4A5 WILD-TYPE" "OR4A5 WILD-TYPE" "OR4A5 WILD-TYPE" "OR4A5 WILD-TYPE" 
     TCGA-05-4434      TCGA-05-5420      TCGA-05-5423      TCGA-05-5425 
"OR4A5 WILD-TYPE" "OR4A5 WILD-TYPE" "OR4A5 WILD-TYPE" "OR4A5 WILD-TYPE" 
     TCGA-05-5429      TCGA-05-5715      TCGA-35-3615      TCGA-35-4122 
"OR4A5 WILD-TYPE" "OR4A5 WILD-TYPE" "OR4A5 WILD-TYPE" "OR4A5 WILD-TYPE" 
     TCGA-35-4123      TCGA-35-5375      TCGA-38-4625      TCGA-38-4626 
"OR4A5 WILD-TYPE"   "OR4A5 MUTATED" "OR4A5 WILD-TYPE" "OR4A5 WILD-TYPE" 
     TCGA-38-4627      TCGA-38-4628      TCGA-38-4629      TCGA-38-4630 
"OR4A5 WILD-TYPE" "OR4A5 WILD-TYPE" "OR4A5 WILD-TYPE" "OR4A5 WILD-TYPE" 
     TCGA-38-4631      TCGA-38-4632      TCGA-38-6178      TCGA-44-2655 
  "OR4A5 MUTATED" "OR4A5 WILD-TYPE" "OR4A5 WILD-TYPE" "OR4A5 WILD-TYPE" 
     TCGA-44-2656      TCGA-44-2657      TCGA-44-2659      TCGA-44-2661 
"OR4A5 WILD-TYPE" "OR4A5 WILD-TYPE"   "OR4A5 MUTATED" "OR4A5 WILD-TYPE" 
     TCGA-44-2662      TCGA-44-2665      TCGA-44-2666      TCGA-44-2668 
"OR4A5 WILD-TYPE" "OR4A5 WILD-TYPE" "OR4A5 WILD-TYPE" "OR4A5 WILD-TYPE" 
     TCGA-44-3396      TCGA-44-3398      TCGA-44-3918      TCGA-44-3919 
  "OR4A5 MUTATED" "OR4A5 WILD-TYPE" "OR4A5 WILD-TYPE" "OR4A5 WILD-TYPE" 
     TCGA-44-4112      TCGA-44-5643      TCGA-44-5645      TCGA-44-6144 
"OR4A5 WILD-TYPE" "OR4A5 WILD-TYPE" "OR4A5 WILD-TYPE" "OR4A5 WILD-TYPE" 
     TCGA-44-6145      TCGA-44-6146      TCGA-44-6147      TCGA-44-6148 
"OR4A5 WILD-TYPE" "OR4A5 WILD-TYPE" "OR4A5 WILD-TYPE" "OR4A5 WILD-TYPE" 
     TCGA-44-6774      TCGA-44-6775      TCGA-44-6776      TCGA-44-6777 
"OR4A5 WILD-TYPE" "OR4A5 WILD-TYPE" "OR4A5 WILD-TYPE" "OR4A5 WILD-TYPE" 
     TCGA-44-6778      TCGA-44-6779      TCGA-49-4486      TCGA-49-4487 
"OR4A5 WILD-TYPE" "OR4A5 WILD-TYPE" "OR4A5 WILD-TYPE" "OR4A5 WILD-TYPE" 
     TCGA-49-4488      TCGA-49-4490      TCGA-49-4494      TCGA-49-4501 
"OR4A5 WILD-TYPE" "OR4A5 WILD-TYPE" "OR4A5 WILD-TYPE" "OR4A5 WILD-TYPE" 
     TCGA-49-4505      TCGA-49-4506      TCGA-49-4507      TCGA-49-4510 
"OR4A5 WILD-TYPE" "OR4A5 WILD-TYPE" "OR4A5 WILD-TYPE" "OR4A5 WILD-TYPE" 
     TCGA-49-4512      TCGA-49-4514      TCGA-49-6742      TCGA-49-6743 
"OR4A5 WILD-TYPE" "OR4A5 WILD-TYPE" "OR4A5 WILD-TYPE"   "OR4A5 MUTATED" 
     TCGA-49-6744      TCGA-49-6745      TCGA-50-5044      TCGA-50-5045 
  "OR4A5 MUTATED" "OR4A5 WILD-TYPE" "OR4A5 WILD-TYPE" "OR4A5 WILD-TYPE" 
     TCGA-50-5049      TCGA-50-5051      TCGA-50-5055      TCGA-50-5066 
"OR4A5 WILD-TYPE" "OR4A5 WILD-TYPE" "OR4A5 WILD-TYPE" "OR4A5 WILD-TYPE" 
     TCGA-50-5068      TCGA-50-5072      TCGA-50-5930      TCGA-50-5931 
"OR4A5 WILD-TYPE" "OR4A5 WILD-TYPE"   "OR4A5 MUTATED" "OR4A5 WILD-TYPE" 
     TCGA-50-5932      TCGA-50-5933      TCGA-50-5935      TCGA-50-5936 
"OR4A5 WILD-TYPE" "OR4A5 WILD-TYPE" "OR4A5 WILD-TYPE" "OR4A5 WILD-TYPE" 
     TCGA-50-5939      TCGA-50-5941      TCGA-50-5942      TCGA-50-5944 
"OR4A5 WILD-TYPE" "OR4A5 WILD-TYPE" "OR4A5 WILD-TYPE" "OR4A5 WILD-TYPE" 
     TCGA-50-5946      TCGA-50-6590      TCGA-50-6591      TCGA-50-6592 
"OR4A5 WILD-TYPE" "OR4A5 WILD-TYPE" "OR4A5 WILD-TYPE" "OR4A5 WILD-TYPE" 
     TCGA-50-6593      TCGA-50-6594      TCGA-50-6595      TCGA-50-6597 
"OR4A5 WILD-TYPE"   "OR4A5 MUTATED" "OR4A5 WILD-TYPE" "OR4A5 WILD-TYPE" 
     TCGA-55-1592      TCGA-55-1594      TCGA-55-1595      TCGA-55-1596 
"OR4A5 WILD-TYPE" "OR4A5 WILD-TYPE" "OR4A5 WILD-TYPE" "OR4A5 WILD-TYPE" 
     TCGA-55-5899      TCGA-55-6543      TCGA-55-6642      TCGA-55-6712 
"OR4A5 WILD-TYPE" "OR4A5 WILD-TYPE" "OR4A5 WILD-TYPE" "OR4A5 WILD-TYPE" 
     TCGA-64-1676      TCGA-64-1677      TCGA-64-1678      TCGA-64-1680 
"OR4A5 WILD-TYPE"   "OR4A5 MUTATED" "OR4A5 WILD-TYPE" "OR4A5 WILD-TYPE" 
     TCGA-64-5774      TCGA-64-5775      TCGA-64-5778      TCGA-64-5779 
"OR4A5 WILD-TYPE" "OR4A5 WILD-TYPE" "OR4A5 WILD-TYPE" "OR4A5 WILD-TYPE" 
     TCGA-64-5781      TCGA-64-5815      TCGA-67-3770      TCGA-67-3771 
"OR4A5 WILD-TYPE" "OR4A5 WILD-TYPE" "OR4A5 WILD-TYPE" "OR4A5 WILD-TYPE" 
     TCGA-67-3772      TCGA-67-3773      TCGA-67-3774      TCGA-67-6215 
"OR4A5 WILD-TYPE" "OR4A5 WILD-TYPE" "OR4A5 WILD-TYPE"   "OR4A5 MUTATED" 
     TCGA-67-6216      TCGA-67-6217      TCGA-71-6725      TCGA-73-4658 
"OR4A5 WILD-TYPE" "OR4A5 WILD-TYPE" "OR4A5 WILD-TYPE" "OR4A5 WILD-TYPE" 
     TCGA-73-4659      TCGA-73-4662      TCGA-73-4666      TCGA-73-4668 
"OR4A5 WILD-TYPE" "OR4A5 WILD-TYPE" "OR4A5 WILD-TYPE" "OR4A5 WILD-TYPE" 
     TCGA-73-4670      TCGA-73-4675      TCGA-73-4676      TCGA-73-4677 
  "OR4A5 MUTATED" "OR4A5 WILD-TYPE" "OR4A5 WILD-TYPE" "OR4A5 WILD-TYPE" 
     TCGA-91-6828      TCGA-91-6829      TCGA-91-6831      TCGA-91-6835 
"OR4A5 WILD-TYPE" "OR4A5 WILD-TYPE" "OR4A5 WILD-TYPE" "OR4A5 WILD-TYPE" 
     TCGA-91-6836 
  "OR4A5 MUTATED" 
     TCGA-05-4249      TCGA-05-4250      TCGA-05-4382      TCGA-05-4384 
"OR4A5 WILD-TYPE" "OR4A5 WILD-TYPE" "OR4A5 WILD-TYPE" "OR4A5 WILD-TYPE" 
     TCGA-05-4390      TCGA-05-4396      TCGA-05-4397      TCGA-05-4398 
"OR4A5 WILD-TYPE" "OR4A5 WILD-TYPE" "OR4A5 WILD-TYPE" "OR4A5 WILD-TYPE" 
     TCGA-05-4402      TCGA-05-4405      TCGA-05-4415      TCGA-05-4417 
"OR4A5 WILD-TYPE" "OR4A5 WILD-TYPE" "OR4A5 WILD-TYPE" "OR4A5 WILD-TYPE" 
     TCGA-05-4418      TCGA-05-4420      TCGA-05-4424      TCGA-05-4426 
"OR4A5 WILD-TYPE" "OR4A5 WILD-TYPE" "OR4A5 WILD-TYPE" "OR4A5 WILD-TYPE" 
     TCGA-05-4427      TCGA-05-4430      TCGA-05-4432      TCGA-05-4433 
"OR4A5 WILD-TYPE" "OR4A5 WILD-TYPE" "OR4A5 WILD-TYPE" "OR4A5 WILD-TYPE" 
     TCGA-05-4434      TCGA-05-5420      TCGA-05-5423      TCGA-05-5425 
"OR4A5 WILD-TYPE" "OR4A5 WILD-TYPE" "OR4A5 WILD-TYPE" "OR4A5 WILD-TYPE" 
     TCGA-05-5429      TCGA-05-5715      TCGA-35-3615      TCGA-35-4122 
"OR4A5 WILD-TYPE" "OR4A5 WILD-TYPE" "OR4A5 WILD-TYPE" "OR4A5 WILD-TYPE" 
     TCGA-35-4123      TCGA-35-5375      TCGA-38-4625      TCGA-38-4626 
"OR4A5 WILD-TYPE"   "OR4A5 MUTATED" "OR4A5 WILD-TYPE" "OR4A5 WILD-TYPE" 
     TCGA-38-4627      TCGA-38-4628      TCGA-38-4629      TCGA-38-4630 
"OR4A5 WILD-TYPE" "OR4A5 WILD-TYPE" "OR4A5 WILD-TYPE" "OR4A5 WILD-TYPE" 
     TCGA-38-4631      TCGA-38-4632      TCGA-38-6178      TCGA-44-2655 
  "OR4A5 MUTATED" "OR4A5 WILD-TYPE" "OR4A5 WILD-TYPE" "OR4A5 WILD-TYPE" 
     TCGA-44-2656      TCGA-44-2657      TCGA-44-2659      TCGA-44-2661 
"OR4A5 WILD-TYPE" "OR4A5 WILD-TYPE"   "OR4A5 MUTATED" "OR4A5 WILD-TYPE" 
     TCGA-44-2662      TCGA-44-2665      TCGA-44-2666      TCGA-44-2668 
"OR4A5 WILD-TYPE" "OR4A5 WILD-TYPE" "OR4A5 WILD-TYPE" "OR4A5 WILD-TYPE" 
     TCGA-44-3396      TCGA-44-3398      TCGA-44-3918      TCGA-44-3919 
  "OR4A5 MUTATED" "OR4A5 WILD-TYPE" "OR4A5 WILD-TYPE" "OR4A5 WILD-TYPE" 
     TCGA-44-4112      TCGA-44-5643      TCGA-44-5645      TCGA-44-6144 
"OR4A5 WILD-TYPE" "OR4A5 WILD-TYPE" "OR4A5 WILD-TYPE" "OR4A5 WILD-TYPE" 
     TCGA-44-6145      TCGA-44-6146      TCGA-44-6147      TCGA-44-6148 
"OR4A5 WILD-TYPE" "OR4A5 WILD-TYPE" "OR4A5 WILD-TYPE" "OR4A5 WILD-TYPE" 
     TCGA-44-6774      TCGA-44-6775      TCGA-44-6776      TCGA-44-6777 
"OR4A5 WILD-TYPE" "OR4A5 WILD-TYPE" "OR4A5 WILD-TYPE" "OR4A5 WILD-TYPE" 
     TCGA-44-6778      TCGA-44-6779      TCGA-49-4486      TCGA-49-4487 
"OR4A5 WILD-TYPE" "OR4A5 WILD-TYPE" "OR4A5 WILD-TYPE" "OR4A5 WILD-TYPE" 
     TCGA-49-4488      TCGA-49-4490      TCGA-49-4494      TCGA-49-4501 
"OR4A5 WILD-TYPE" "OR4A5 WILD-TYPE" "OR4A5 WILD-TYPE" "OR4A5 WILD-TYPE" 
     TCGA-49-4505      TCGA-49-4506      TCGA-49-4507      TCGA-49-4510 
"OR4A5 WILD-TYPE" "OR4A5 WILD-TYPE" "OR4A5 WILD-TYPE" "OR4A5 WILD-TYPE" 
     TCGA-49-4512      TCGA-49-4514      TCGA-49-6742      TCGA-49-6743 
"OR4A5 WILD-TYPE" "OR4A5 WILD-TYPE" "OR4A5 WILD-TYPE"   "OR4A5 MUTATED" 
     TCGA-49-6744      TCGA-49-6745      TCGA-50-5044      TCGA-50-5045 
  "OR4A5 MUTATED" "OR4A5 WILD-TYPE" "OR4A5 WILD-TYPE" "OR4A5 WILD-TYPE" 
     TCGA-50-5049      TCGA-50-5051      TCGA-50-5055      TCGA-50-5066 
"OR4A5 WILD-TYPE" "OR4A5 WILD-TYPE" "OR4A5 WILD-TYPE" "OR4A5 WILD-TYPE" 
     TCGA-50-5068      TCGA-50-5072      TCGA-50-5930      TCGA-50-5931 
"OR4A5 WILD-TYPE" "OR4A5 WILD-TYPE"   "OR4A5 MUTATED" "OR4A5 WILD-TYPE" 
     TCGA-50-5932      TCGA-50-5933      TCGA-50-5935      TCGA-50-5936 
"OR4A5 WILD-TYPE" "OR4A5 WILD-TYPE" "OR4A5 WILD-TYPE" "OR4A5 WILD-TYPE" 
     TCGA-50-5939      TCGA-50-5941      TCGA-50-5942      TCGA-50-5944 
"OR4A5 WILD-TYPE" "OR4A5 WILD-TYPE" "OR4A5 WILD-TYPE" "OR4A5 WILD-TYPE" 
     TCGA-50-5946      TCGA-50-6590      TCGA-50-6591      TCGA-50-6592 
"OR4A5 WILD-TYPE" "OR4A5 WILD-TYPE" "OR4A5 WILD-TYPE" "OR4A5 WILD-TYPE" 
     TCGA-50-6593      TCGA-50-6594      TCGA-50-6595      TCGA-50-6597 
"OR4A5 WILD-TYPE"   "OR4A5 MUTATED" "OR4A5 WILD-TYPE" "OR4A5 WILD-TYPE" 
     TCGA-55-1592      TCGA-55-1594      TCGA-55-1595      TCGA-55-1596 
"OR4A5 WILD-TYPE" "OR4A5 WILD-TYPE" "OR4A5 WILD-TYPE" "OR4A5 WILD-TYPE" 
     TCGA-55-5899      TCGA-55-6543      TCGA-55-6642      TCGA-55-6712 
"OR4A5 WILD-TYPE" "OR4A5 WILD-TYPE" "OR4A5 WILD-TYPE" "OR4A5 WILD-TYPE" 
     TCGA-64-1676      TCGA-64-1677      TCGA-64-1678      TCGA-64-1680 
"OR4A5 WILD-TYPE"   "OR4A5 MUTATED" "OR4A5 WILD-TYPE" "OR4A5 WILD-TYPE" 
     TCGA-64-5774      TCGA-64-5775      TCGA-64-5778      TCGA-64-5779 
"OR4A5 WILD-TYPE" "OR4A5 WILD-TYPE" "OR4A5 WILD-TYPE" "OR4A5 WILD-TYPE" 
     TCGA-64-5781      TCGA-64-5815      TCGA-67-3770      TCGA-67-3771 
"OR4A5 WILD-TYPE" "OR4A5 WILD-TYPE" "OR4A5 WILD-TYPE" "OR4A5 WILD-TYPE" 
     TCGA-67-3772      TCGA-67-3773      TCGA-67-3774      TCGA-67-6215 
"OR4A5 WILD-TYPE" "OR4A5 WILD-TYPE" "OR4A5 WILD-TYPE"   "OR4A5 MUTATED" 
     TCGA-67-6216      TCGA-67-6217      TCGA-71-6725      TCGA-73-4658 
"OR4A5 WILD-TYPE" "OR4A5 WILD-TYPE" "OR4A5 WILD-TYPE" "OR4A5 WILD-TYPE" 
     TCGA-73-4659      TCGA-73-4662      TCGA-73-4666      TCGA-73-4668 
"OR4A5 WILD-TYPE" "OR4A5 WILD-TYPE" "OR4A5 WILD-TYPE" "OR4A5 WILD-TYPE" 
     TCGA-73-4670      TCGA-73-4675      TCGA-73-4676      TCGA-73-4677 
  "OR4A5 MUTATED" "OR4A5 WILD-TYPE" "OR4A5 WILD-TYPE" "OR4A5 WILD-TYPE" 
     TCGA-91-6828      TCGA-91-6829      TCGA-91-6831      TCGA-91-6835 
"OR4A5 WILD-TYPE" "OR4A5 WILD-TYPE" "OR4A5 WILD-TYPE" "OR4A5 WILD-TYPE" 
     TCGA-91-6836 
  "OR4A5 MUTATED" 
[1] "hr=" "3"  
D23V2, continuous
D23V3, binary
[1] "tbl2"
                 cls
clus              [,1] [,2]
  OR4A5 MUTATED     10    2
  OR4A5 WILD-TYPE   83   77
        clus
vv       OR4A5 MUTATED OR4A5 WILD-TYPE
  FEMALE            10              83
  MALE               2              77
D23V4, continuous
[1] "Remove cluster labels:" "OR4A5 MUTATED"         
clus
  OR4A5 MUTATED OR4A5 WILD-TYPE 
              2              10 
     TCGA-35-4122      TCGA-35-4123      TCGA-64-5778      TCGA-71-6725 
"OR4A5 WILD-TYPE" "OR4A5 WILD-TYPE" "OR4A5 WILD-TYPE" "OR4A5 WILD-TYPE" 
     TCGA-73-4659      TCGA-73-4662      TCGA-73-4666      TCGA-73-4668 
"OR4A5 WILD-TYPE" "OR4A5 WILD-TYPE" "OR4A5 WILD-TYPE" "OR4A5 WILD-TYPE" 
     TCGA-73-4676      TCGA-75-5122 
"OR4A5 WILD-TYPE" "OR4A5 WILD-TYPE" 
D23V5, multiclass
D23V6, multiclass
    clus
vv   OR4A5 MUTATED OR4A5 WILD-TYPE
  T1             2              39
  T2             9              99
  T3             1              13
  T4             0               8
D23V7, multiclass
       clus
vv      OR4A5 MUTATED OR4A5 WILD-TYPE
  N0                4              91
  N1                2              35
  N2+N3             6              29
D23V8, multiclass
    clus
vv   OR4A5 MUTATED OR4A5 WILD-TYPE
  M0             8             129
  M1             1               8
  MX             3              19
D23V9, multiclass
     clus
vv    OR4A5 MUTATED OR4A5 WILD-TYPE
  I               3              85
  II              2              31
  III             6              33
  IV              1               8
D23V10, binary
[1] "tbl2"
                 cls
clus              [,1] [,2]
  OR4A5 MUTATED      1   11
  OR4A5 WILD-TYPE   15  145
     clus
vv    OR4A5 MUTATED OR4A5 WILD-TYPE
  NO              1              15
  YES            11             145
D23V11, continuous
D23V12, continuous
D23V13, multiclass
                                             clus
vv                                            OR4A5 MUTATED OR4A5 WILD-TYPE
  CURRENT REFORMED SMOKER FOR < OR = 15 YEARS             7              55
  CURRENT REFORMED SMOKER FOR > 15 YEARS                  0              46
  CURRENT SMOKER                                          3              25
  LIFELONG NON-SMOKER                                     1              23
D23V14, continuous

Clustering(24) Variable = TRIM58 MUTATION ANALYSIS
D24V1, survival
                  sevent
clus2               0  1
  TRIM58 MUTATED    4  3
  TRIM58 WILD-TYPE 95 47
  TRIM58 MUTATED TRIM58 WILD-TYPE 
               7              142 
  TRIM58 MUTATED TRIM58 WILD-TYPE 
               3               47 
$`TRIM58 MUTATED`
TCGA-05-5429 TCGA-44-2655 TCGA-44-6778 TCGA-49-4488 TCGA-50-6590 TCGA-50-6592 
        0.99        18.87        36.49        28.57        42.31        25.51 
TCGA-67-3774 
        0.59 

$`TRIM58 WILD-TYPE`
TCGA-05-4249 TCGA-05-4250 TCGA-05-4382 TCGA-05-4384 TCGA-05-4390 TCGA-05-4396 
       38.07         3.98        19.92        14.01        37.02         9.96 
TCGA-05-4397 TCGA-05-4398 TCGA-05-4402 TCGA-05-4405 TCGA-05-4415 TCGA-05-4417 
       24.03        47.05         8.02        20.05         2.96        14.93 
TCGA-05-4418 TCGA-05-4420 TCGA-05-4424 TCGA-05-4426 TCGA-05-4427 TCGA-05-4430 
        8.98        29.95        30.02        26.01        26.01        25.02 
TCGA-05-4432 TCGA-05-4433 TCGA-05-4434 TCGA-05-5420 TCGA-05-5423 TCGA-05-5425 
       25.02        24.00        15.02         1.02         4.96         2.96 
TCGA-05-5715 TCGA-35-3615 TCGA-35-4122 TCGA-35-4123 TCGA-35-5375 TCGA-38-4625 
        2.04         0.46         7.36         5.95         8.68        47.61 
TCGA-38-4626 TCGA-38-4627 TCGA-38-4628 TCGA-38-4629 TCGA-38-4630 TCGA-38-4631 
       85.32        37.71        49.02        28.37        35.28        11.64 
TCGA-38-4632 TCGA-38-6178 TCGA-44-2656 TCGA-44-2657 TCGA-44-2659 TCGA-44-2661 
       44.61         5.19        19.10        13.15        17.39         3.39 
TCGA-44-2662 TCGA-44-2665 TCGA-44-2666 TCGA-44-2668 TCGA-44-3396 TCGA-44-3398 
       15.78        13.15         3.19         8.09        10.22         8.32 
TCGA-44-3918 TCGA-44-3919 TCGA-44-4112 TCGA-44-5643 TCGA-44-5645 TCGA-44-6144 
        6.44         6.21         4.60         3.48         6.84         0.30 
TCGA-44-6145 TCGA-44-6146 TCGA-44-6147 TCGA-44-6148 TCGA-44-6774 TCGA-44-6775 
        3.35         9.93         7.76         3.12         5.42         2.70 
TCGA-44-6776 TCGA-44-6777 TCGA-44-6779 TCGA-49-4486 TCGA-49-4487 TCGA-49-4490 
       63.72        32.45        16.41        76.21        28.11        12.66 
TCGA-49-4494 TCGA-49-4501 TCGA-49-4505 TCGA-49-4506 TCGA-49-4507 TCGA-49-4510 
       35.54        46.72        14.07        32.84         8.81        29.46 
TCGA-49-4512 TCGA-49-4514 TCGA-49-6742 TCGA-49-6743 TCGA-49-6744 TCGA-49-6745 
       29.75        43.20        15.02        12.13        12.99         4.93 
TCGA-50-5044 TCGA-50-5045 TCGA-50-5049 TCGA-50-5051 TCGA-50-5055 TCGA-50-5066 
       20.48        71.47        48.82        14.96        25.81         9.76 
TCGA-50-5068 TCGA-50-5072 TCGA-50-5930 TCGA-50-5931 TCGA-50-5932 TCGA-50-5933 
       49.28         8.05         9.27         8.78        35.87        77.88 
TCGA-50-5935 TCGA-50-5936 TCGA-50-5939 TCGA-50-5941 TCGA-50-5942 TCGA-50-5944 
       21.47         8.45        15.12         9.37         4.44        12.26 
TCGA-50-5946 TCGA-50-6591 TCGA-50-6593 TCGA-50-6594 TCGA-50-6595 TCGA-50-6597 
       11.47         3.88        11.05        12.16         6.21        33.37 
TCGA-55-1592 TCGA-55-1594 TCGA-55-1595 TCGA-55-1596 TCGA-55-5899 TCGA-55-6543 
       23.05        38.73        48.62        45.17         2.86         0.07 
TCGA-55-6642 TCGA-55-6712 TCGA-64-1676 TCGA-64-1677 TCGA-64-1678 TCGA-64-1680 
       32.61         0.79        56.81        20.65        39.09        37.02 
TCGA-64-5774 TCGA-64-5775 TCGA-64-5778 TCGA-64-5779 TCGA-64-5781 TCGA-64-5815 
       83.84         0.10        30.44        16.67        39.52         7.33 
TCGA-67-3770 TCGA-67-3771 TCGA-67-3772 TCGA-67-3773 TCGA-67-6215 TCGA-67-6216 
        0.99         1.97         0.59         2.04         0.89         0.69 
TCGA-67-6217 TCGA-71-6725 TCGA-73-4658 TCGA-73-4659 TCGA-73-4662 TCGA-73-4666 
       13.87         2.01        52.57        23.38        29.95        20.28 
TCGA-73-4668 TCGA-73-4670 TCGA-73-4675 TCGA-73-4676 TCGA-73-4677 TCGA-91-6828 
       15.35         0.46         1.32         4.01         1.25         1.22 
TCGA-91-6829 TCGA-91-6831 TCGA-91-6835 TCGA-91-6836 
       41.33         1.28         1.15         0.36 

  TRIM58 MUTATED TRIM58 WILD-TYPE 
            0.59             0.07 
  TRIM58 MUTATED TRIM58 WILD-TYPE 
           42.31            85.32 
  TRIM58 MUTATED TRIM58 WILD-TYPE 
           25.51            13.15 
[1] "0.6 - 42.3 (25.5)" "0.1 - 85.3 (13.2)"
      TCGA-05-4249       TCGA-05-4250       TCGA-05-4382       TCGA-05-4384 
"TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" 
      TCGA-05-4390       TCGA-05-4396       TCGA-05-4397       TCGA-05-4398 
"TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" 
      TCGA-05-4402       TCGA-05-4405       TCGA-05-4415       TCGA-05-4417 
"TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" 
      TCGA-05-4418       TCGA-05-4420       TCGA-05-4424       TCGA-05-4426 
"TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" 
      TCGA-05-4427       TCGA-05-4430       TCGA-05-4432       TCGA-05-4433 
"TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" 
      TCGA-05-4434       TCGA-05-5420       TCGA-05-5423       TCGA-05-5425 
"TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" 
      TCGA-05-5429       TCGA-05-5715       TCGA-35-3615       TCGA-35-4122 
  "TRIM58 MUTATED" "TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" 
      TCGA-35-4123       TCGA-35-5375       TCGA-38-4625       TCGA-38-4626 
"TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" 
      TCGA-38-4627       TCGA-38-4628       TCGA-38-4629       TCGA-38-4630 
"TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" 
      TCGA-38-4631       TCGA-38-4632       TCGA-38-6178       TCGA-44-2655 
"TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE"   "TRIM58 MUTATED" 
      TCGA-44-2656       TCGA-44-2657       TCGA-44-2659       TCGA-44-2661 
"TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" 
      TCGA-44-2662       TCGA-44-2665       TCGA-44-2666       TCGA-44-2668 
"TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" 
      TCGA-44-3396       TCGA-44-3398       TCGA-44-3918       TCGA-44-3919 
"TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" 
      TCGA-44-4112       TCGA-44-5643       TCGA-44-5645       TCGA-44-6144 
"TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" 
      TCGA-44-6145       TCGA-44-6146       TCGA-44-6147       TCGA-44-6148 
"TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" 
      TCGA-44-6774       TCGA-44-6775       TCGA-44-6776       TCGA-44-6777 
"TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" 
      TCGA-44-6778       TCGA-44-6779       TCGA-49-4486       TCGA-49-4487 
  "TRIM58 MUTATED" "TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" 
      TCGA-49-4488       TCGA-49-4490       TCGA-49-4494       TCGA-49-4501 
  "TRIM58 MUTATED" "TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" 
      TCGA-49-4505       TCGA-49-4506       TCGA-49-4507       TCGA-49-4510 
"TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" 
      TCGA-49-4512       TCGA-49-4514       TCGA-49-6742       TCGA-49-6743 
"TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" 
      TCGA-49-6744       TCGA-49-6745       TCGA-50-5044       TCGA-50-5045 
"TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" 
      TCGA-50-5049       TCGA-50-5051       TCGA-50-5055       TCGA-50-5066 
"TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" 
      TCGA-50-5068       TCGA-50-5072       TCGA-50-5930       TCGA-50-5931 
"TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" 
      TCGA-50-5932       TCGA-50-5933       TCGA-50-5935       TCGA-50-5936 
"TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" 
      TCGA-50-5939       TCGA-50-5941       TCGA-50-5942       TCGA-50-5944 
"TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" 
      TCGA-50-5946       TCGA-50-6590       TCGA-50-6591       TCGA-50-6592 
"TRIM58 WILD-TYPE"   "TRIM58 MUTATED" "TRIM58 WILD-TYPE"   "TRIM58 MUTATED" 
      TCGA-50-6593       TCGA-50-6594       TCGA-50-6595       TCGA-50-6597 
"TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" 
      TCGA-55-1592       TCGA-55-1594       TCGA-55-1595       TCGA-55-1596 
"TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" 
      TCGA-55-5899       TCGA-55-6543       TCGA-55-6642       TCGA-55-6712 
"TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" 
      TCGA-64-1676       TCGA-64-1677       TCGA-64-1678       TCGA-64-1680 
"TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" 
      TCGA-64-5774       TCGA-64-5775       TCGA-64-5778       TCGA-64-5779 
"TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" 
      TCGA-64-5781       TCGA-64-5815       TCGA-67-3770       TCGA-67-3771 
"TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" 
      TCGA-67-3772       TCGA-67-3773       TCGA-67-3774       TCGA-67-6215 
"TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE"   "TRIM58 MUTATED" "TRIM58 WILD-TYPE" 
      TCGA-67-6216       TCGA-67-6217       TCGA-71-6725       TCGA-73-4658 
"TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" 
      TCGA-73-4659       TCGA-73-4662       TCGA-73-4666       TCGA-73-4668 
"TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" 
      TCGA-73-4670       TCGA-73-4675       TCGA-73-4676       TCGA-73-4677 
"TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" 
      TCGA-91-6828       TCGA-91-6829       TCGA-91-6831       TCGA-91-6835 
"TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" 
      TCGA-91-6836 
"TRIM58 WILD-TYPE" 
      TCGA-05-4249       TCGA-05-4250       TCGA-05-4382       TCGA-05-4384 
"TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" 
      TCGA-05-4390       TCGA-05-4396       TCGA-05-4397       TCGA-05-4398 
"TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" 
      TCGA-05-4402       TCGA-05-4405       TCGA-05-4415       TCGA-05-4417 
"TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" 
      TCGA-05-4418       TCGA-05-4420       TCGA-05-4424       TCGA-05-4426 
"TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" 
      TCGA-05-4427       TCGA-05-4430       TCGA-05-4432       TCGA-05-4433 
"TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" 
      TCGA-05-4434       TCGA-05-5420       TCGA-05-5423       TCGA-05-5425 
"TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" 
      TCGA-05-5429       TCGA-05-5715       TCGA-35-3615       TCGA-35-4122 
  "TRIM58 MUTATED" "TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" 
      TCGA-35-4123       TCGA-35-5375       TCGA-38-4625       TCGA-38-4626 
"TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" 
      TCGA-38-4627       TCGA-38-4628       TCGA-38-4629       TCGA-38-4630 
"TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" 
      TCGA-38-4631       TCGA-38-4632       TCGA-38-6178       TCGA-44-2655 
"TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE"   "TRIM58 MUTATED" 
      TCGA-44-2656       TCGA-44-2657       TCGA-44-2659       TCGA-44-2661 
"TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" 
      TCGA-44-2662       TCGA-44-2665       TCGA-44-2666       TCGA-44-2668 
"TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" 
      TCGA-44-3396       TCGA-44-3398       TCGA-44-3918       TCGA-44-3919 
"TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" 
      TCGA-44-4112       TCGA-44-5643       TCGA-44-5645       TCGA-44-6144 
"TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" 
      TCGA-44-6145       TCGA-44-6146       TCGA-44-6147       TCGA-44-6148 
"TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" 
      TCGA-44-6774       TCGA-44-6775       TCGA-44-6776       TCGA-44-6777 
"TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" 
      TCGA-44-6778       TCGA-44-6779       TCGA-49-4486       TCGA-49-4487 
  "TRIM58 MUTATED" "TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" 
      TCGA-49-4488       TCGA-49-4490       TCGA-49-4494       TCGA-49-4501 
  "TRIM58 MUTATED" "TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" 
      TCGA-49-4505       TCGA-49-4506       TCGA-49-4507       TCGA-49-4510 
"TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" 
      TCGA-49-4512       TCGA-49-4514       TCGA-49-6742       TCGA-49-6743 
"TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" 
      TCGA-49-6744       TCGA-49-6745       TCGA-50-5044       TCGA-50-5045 
"TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" 
      TCGA-50-5049       TCGA-50-5051       TCGA-50-5055       TCGA-50-5066 
"TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" 
      TCGA-50-5068       TCGA-50-5072       TCGA-50-5930       TCGA-50-5931 
"TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" 
      TCGA-50-5932       TCGA-50-5933       TCGA-50-5935       TCGA-50-5936 
"TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" 
      TCGA-50-5939       TCGA-50-5941       TCGA-50-5942       TCGA-50-5944 
"TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" 
      TCGA-50-5946       TCGA-50-6590       TCGA-50-6591       TCGA-50-6592 
"TRIM58 WILD-TYPE"   "TRIM58 MUTATED" "TRIM58 WILD-TYPE"   "TRIM58 MUTATED" 
      TCGA-50-6593       TCGA-50-6594       TCGA-50-6595       TCGA-50-6597 
"TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" 
      TCGA-55-1592       TCGA-55-1594       TCGA-55-1595       TCGA-55-1596 
"TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" 
      TCGA-55-5899       TCGA-55-6543       TCGA-55-6642       TCGA-55-6712 
"TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" 
      TCGA-64-1676       TCGA-64-1677       TCGA-64-1678       TCGA-64-1680 
"TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" 
      TCGA-64-5774       TCGA-64-5775       TCGA-64-5778       TCGA-64-5779 
"TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" 
      TCGA-64-5781       TCGA-64-5815       TCGA-67-3770       TCGA-67-3771 
"TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" 
      TCGA-67-3772       TCGA-67-3773       TCGA-67-3774       TCGA-67-6215 
"TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE"   "TRIM58 MUTATED" "TRIM58 WILD-TYPE" 
      TCGA-67-6216       TCGA-67-6217       TCGA-71-6725       TCGA-73-4658 
"TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" 
      TCGA-73-4659       TCGA-73-4662       TCGA-73-4666       TCGA-73-4668 
"TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" 
      TCGA-73-4670       TCGA-73-4675       TCGA-73-4676       TCGA-73-4677 
"TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" 
      TCGA-91-6828       TCGA-91-6829       TCGA-91-6831       TCGA-91-6835 
"TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" 
      TCGA-91-6836 
"TRIM58 WILD-TYPE" 
      TCGA-05-4249       TCGA-05-4250       TCGA-05-4382       TCGA-05-4384 
"TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" 
      TCGA-05-4390       TCGA-05-4396       TCGA-05-4397       TCGA-05-4398 
"TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" 
      TCGA-05-4402       TCGA-05-4405       TCGA-05-4415       TCGA-05-4417 
"TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" 
      TCGA-05-4418       TCGA-05-4420       TCGA-05-4424       TCGA-05-4426 
"TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" 
      TCGA-05-4427       TCGA-05-4430       TCGA-05-4432       TCGA-05-4433 
"TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" 
      TCGA-05-4434       TCGA-05-5420       TCGA-05-5423       TCGA-05-5425 
"TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" 
      TCGA-05-5429       TCGA-05-5715       TCGA-35-3615       TCGA-35-4122 
  "TRIM58 MUTATED" "TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" 
      TCGA-35-4123       TCGA-35-5375       TCGA-38-4625       TCGA-38-4626 
"TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" 
      TCGA-38-4627       TCGA-38-4628       TCGA-38-4629       TCGA-38-4630 
"TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" 
      TCGA-38-4631       TCGA-38-4632       TCGA-38-6178       TCGA-44-2655 
"TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE"   "TRIM58 MUTATED" 
      TCGA-44-2656       TCGA-44-2657       TCGA-44-2659       TCGA-44-2661 
"TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" 
      TCGA-44-2662       TCGA-44-2665       TCGA-44-2666       TCGA-44-2668 
"TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" 
      TCGA-44-3396       TCGA-44-3398       TCGA-44-3918       TCGA-44-3919 
"TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" 
      TCGA-44-4112       TCGA-44-5643       TCGA-44-5645       TCGA-44-6144 
"TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" 
      TCGA-44-6145       TCGA-44-6146       TCGA-44-6147       TCGA-44-6148 
"TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" 
      TCGA-44-6774       TCGA-44-6775       TCGA-44-6776       TCGA-44-6777 
"TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" 
      TCGA-44-6778       TCGA-44-6779       TCGA-49-4486       TCGA-49-4487 
  "TRIM58 MUTATED" "TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" 
      TCGA-49-4488       TCGA-49-4490       TCGA-49-4494       TCGA-49-4501 
  "TRIM58 MUTATED" "TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" 
      TCGA-49-4505       TCGA-49-4506       TCGA-49-4507       TCGA-49-4510 
"TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" 
      TCGA-49-4512       TCGA-49-4514       TCGA-49-6742       TCGA-49-6743 
"TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" 
      TCGA-49-6744       TCGA-49-6745       TCGA-50-5044       TCGA-50-5045 
"TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" 
      TCGA-50-5049       TCGA-50-5051       TCGA-50-5055       TCGA-50-5066 
"TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" 
      TCGA-50-5068       TCGA-50-5072       TCGA-50-5930       TCGA-50-5931 
"TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" 
      TCGA-50-5932       TCGA-50-5933       TCGA-50-5935       TCGA-50-5936 
"TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" 
      TCGA-50-5939       TCGA-50-5941       TCGA-50-5942       TCGA-50-5944 
"TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" 
      TCGA-50-5946       TCGA-50-6590       TCGA-50-6591       TCGA-50-6592 
"TRIM58 WILD-TYPE"   "TRIM58 MUTATED" "TRIM58 WILD-TYPE"   "TRIM58 MUTATED" 
      TCGA-50-6593       TCGA-50-6594       TCGA-50-6595       TCGA-50-6597 
"TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" 
      TCGA-55-1592       TCGA-55-1594       TCGA-55-1595       TCGA-55-1596 
"TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" 
      TCGA-55-5899       TCGA-55-6543       TCGA-55-6642       TCGA-55-6712 
"TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" 
      TCGA-64-1676       TCGA-64-1677       TCGA-64-1678       TCGA-64-1680 
"TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" 
      TCGA-64-5774       TCGA-64-5775       TCGA-64-5778       TCGA-64-5779 
"TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" 
      TCGA-64-5781       TCGA-64-5815       TCGA-67-3770       TCGA-67-3771 
"TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" 
      TCGA-67-3772       TCGA-67-3773       TCGA-67-3774       TCGA-67-6215 
"TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE"   "TRIM58 MUTATED" "TRIM58 WILD-TYPE" 
      TCGA-67-6216       TCGA-67-6217       TCGA-71-6725       TCGA-73-4658 
"TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" 
      TCGA-73-4659       TCGA-73-4662       TCGA-73-4666       TCGA-73-4668 
"TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" 
      TCGA-73-4670       TCGA-73-4675       TCGA-73-4676       TCGA-73-4677 
"TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" 
      TCGA-91-6828       TCGA-91-6829       TCGA-91-6831       TCGA-91-6835 
"TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" 
      TCGA-91-6836 
"TRIM58 WILD-TYPE" 
[1] "hr=" "1.2"
D24V2, continuous
D24V3, binary
[1] "tbl2"
                  cls
clus               [,1] [,2]
  TRIM58 MUTATED      5    3
  TRIM58 WILD-TYPE   88   76
        clus
vv       TRIM58 MUTATED TRIM58 WILD-TYPE
  FEMALE              5               88
  MALE                3               76
D24V4, continuous
D24V5, multiclass
D24V6, multiclass
    clus
vv   TRIM58 MUTATED TRIM58 WILD-TYPE
  T1              3               38
  T2              4              104
  T3              1               13
  T4              0                8
D24V7, multiclass
       clus
vv      TRIM58 MUTATED TRIM58 WILD-TYPE
  N0                 6               89
  N1                 1               36
  N2+N3              1               34
D24V8, multiclass
    clus
vv   TRIM58 MUTATED TRIM58 WILD-TYPE
  M0              6              131
  M1              0                9
  MX              2               20
D24V9, multiclass
     clus
vv    TRIM58 MUTATED TRIM58 WILD-TYPE
  I                6               82
  II               1               32
  III              1               38
  IV               0                9
D24V10, binary
[1] "tbl2"
                  cls
clus               [,1] [,2]
  TRIM58 MUTATED      0    8
  TRIM58 WILD-TYPE   16  148
     clus
vv    TRIM58 MUTATED TRIM58 WILD-TYPE
  NO               0               16
  YES              8              148
D24V11, continuous
D24V12, continuous
D24V13, multiclass
                                             clus
vv                                            TRIM58 MUTATED TRIM58 WILD-TYPE
  CURRENT REFORMED SMOKER FOR < OR = 15 YEARS              3               59
  CURRENT REFORMED SMOKER FOR > 15 YEARS                   4               42
  CURRENT SMOKER                                           0               28
  LIFELONG NON-SMOKER                                      1               23
D24V14, continuous
[1] "Remove cluster labels:" "TRIM58 MUTATED"        
clus
  TRIM58 MUTATED TRIM58 WILD-TYPE 
               2               66 
      TCGA-05-4384       TCGA-05-4390       TCGA-05-4396       TCGA-05-4405 
"TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" 
      TCGA-05-4410       TCGA-05-4415       TCGA-05-4417       TCGA-05-4424 
"TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" 
      TCGA-05-4427       TCGA-05-4433       TCGA-05-5420       TCGA-05-5423 
"TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" 
      TCGA-05-5425       TCGA-05-5428       TCGA-35-4122       TCGA-35-4123 
"TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" 
      TCGA-35-5375       TCGA-38-4625       TCGA-38-4626       TCGA-44-2656 
"TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" 
      TCGA-44-2657       TCGA-44-2659       TCGA-44-2662       TCGA-44-2666 
"TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" 
      TCGA-44-2668       TCGA-44-3396       TCGA-44-3398       TCGA-44-3918 
"TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" 
      TCGA-44-4112       TCGA-44-5645       TCGA-44-6144       TCGA-44-6145 
"TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" 
      TCGA-44-6147       TCGA-44-6148       TCGA-44-6774       TCGA-44-6775 
"TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" 
      TCGA-44-6776       TCGA-44-6777       TCGA-44-6779       TCGA-49-4486 
"TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" 
      TCGA-49-4494       TCGA-49-4505       TCGA-55-1592       TCGA-55-1594 
"TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" 
      TCGA-55-1595       TCGA-55-1596       TCGA-55-5899       TCGA-55-6642 
"TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" 
      TCGA-55-6712       TCGA-64-1677       TCGA-64-1678       TCGA-64-1680 
"TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" 
      TCGA-64-5774       TCGA-64-5775       TCGA-64-5778       TCGA-64-5779 
"TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" 
      TCGA-64-5781       TCGA-73-4659       TCGA-73-4662       TCGA-73-4666 
"TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" 
      TCGA-73-4668       TCGA-73-4670       TCGA-73-4675       TCGA-73-4676 
"TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" 
      TCGA-91-6829       TCGA-91-6836 
"TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" 

Clustering(25) Variable = REG1B MUTATION ANALYSIS
D25V1, survival
                 sevent
clus2              0  1
  REG1B MUTATED   10  2
  REG1B WILD-TYPE 89 48
  REG1B MUTATED REG1B WILD-TYPE 
             12             137 
  REG1B MUTATED REG1B WILD-TYPE 
              2              48 
$`REG1B MUTATED`
TCGA-05-4417 TCGA-05-4427 TCGA-35-3615 TCGA-35-4122 TCGA-35-5375 TCGA-44-2657 
       14.93        26.01         0.46         7.36         8.68        13.15 
TCGA-44-3918 TCGA-49-4510 TCGA-50-5045 TCGA-50-5049 TCGA-73-4668 TCGA-73-4676 
        6.44        29.46        71.47        48.82        15.35         4.01 

$`REG1B WILD-TYPE`
TCGA-05-4249 TCGA-05-4250 TCGA-05-4382 TCGA-05-4384 TCGA-05-4390 TCGA-05-4396 
       38.07         3.98        19.92        14.01        37.02         9.96 
TCGA-05-4397 TCGA-05-4398 TCGA-05-4402 TCGA-05-4405 TCGA-05-4415 TCGA-05-4418 
       24.03        47.05         8.02        20.05         2.96         8.98 
TCGA-05-4420 TCGA-05-4424 TCGA-05-4426 TCGA-05-4430 TCGA-05-4432 TCGA-05-4433 
       29.95        30.02        26.01        25.02        25.02        24.00 
TCGA-05-4434 TCGA-05-5420 TCGA-05-5423 TCGA-05-5425 TCGA-05-5429 TCGA-05-5715 
       15.02         1.02         4.96         2.96         0.99         2.04 
TCGA-35-4123 TCGA-38-4625 TCGA-38-4626 TCGA-38-4627 TCGA-38-4628 TCGA-38-4629 
        5.95        47.61        85.32        37.71        49.02        28.37 
TCGA-38-4630 TCGA-38-4631 TCGA-38-4632 TCGA-38-6178 TCGA-44-2655 TCGA-44-2656 
       35.28        11.64        44.61         5.19        18.87        19.10 
TCGA-44-2659 TCGA-44-2661 TCGA-44-2662 TCGA-44-2665 TCGA-44-2666 TCGA-44-2668 
       17.39         3.39        15.78        13.15         3.19         8.09 
TCGA-44-3396 TCGA-44-3398 TCGA-44-3919 TCGA-44-4112 TCGA-44-5643 TCGA-44-5645 
       10.22         8.32         6.21         4.60         3.48         6.84 
TCGA-44-6144 TCGA-44-6145 TCGA-44-6146 TCGA-44-6147 TCGA-44-6148 TCGA-44-6774 
        0.30         3.35         9.93         7.76         3.12         5.42 
TCGA-44-6775 TCGA-44-6776 TCGA-44-6777 TCGA-44-6778 TCGA-44-6779 TCGA-49-4486 
        2.70        63.72        32.45        36.49        16.41        76.21 
TCGA-49-4487 TCGA-49-4488 TCGA-49-4490 TCGA-49-4494 TCGA-49-4501 TCGA-49-4505 
       28.11        28.57        12.66        35.54        46.72        14.07 
TCGA-49-4506 TCGA-49-4507 TCGA-49-4512 TCGA-49-4514 TCGA-49-6742 TCGA-49-6743 
       32.84         8.81        29.75        43.20        15.02        12.13 
TCGA-49-6744 TCGA-49-6745 TCGA-50-5044 TCGA-50-5051 TCGA-50-5055 TCGA-50-5066 
       12.99         4.93        20.48        14.96        25.81         9.76 
TCGA-50-5068 TCGA-50-5072 TCGA-50-5930 TCGA-50-5931 TCGA-50-5932 TCGA-50-5933 
       49.28         8.05         9.27         8.78        35.87        77.88 
TCGA-50-5935 TCGA-50-5936 TCGA-50-5939 TCGA-50-5941 TCGA-50-5942 TCGA-50-5944 
       21.47         8.45        15.12         9.37         4.44        12.26 
TCGA-50-5946 TCGA-50-6590 TCGA-50-6591 TCGA-50-6592 TCGA-50-6593 TCGA-50-6594 
       11.47        42.31         3.88        25.51        11.05        12.16 
TCGA-50-6595 TCGA-50-6597 TCGA-55-1592 TCGA-55-1594 TCGA-55-1595 TCGA-55-1596 
        6.21        33.37        23.05        38.73        48.62        45.17 
TCGA-55-5899 TCGA-55-6543 TCGA-55-6642 TCGA-55-6712 TCGA-64-1676 TCGA-64-1677 
        2.86         0.07        32.61         0.79        56.81        20.65 
TCGA-64-1678 TCGA-64-1680 TCGA-64-5774 TCGA-64-5775 TCGA-64-5778 TCGA-64-5779 
       39.09        37.02        83.84         0.10        30.44        16.67 
TCGA-64-5781 TCGA-64-5815 TCGA-67-3770 TCGA-67-3771 TCGA-67-3772 TCGA-67-3773 
       39.52         7.33         0.99         1.97         0.59         2.04 
TCGA-67-3774 TCGA-67-6215 TCGA-67-6216 TCGA-67-6217 TCGA-71-6725 TCGA-73-4658 
        0.59         0.89         0.69        13.87         2.01        52.57 
TCGA-73-4659 TCGA-73-4662 TCGA-73-4666 TCGA-73-4670 TCGA-73-4675 TCGA-73-4677 
       23.38        29.95        20.28         0.46         1.32         1.25 
TCGA-91-6828 TCGA-91-6829 TCGA-91-6831 TCGA-91-6835 TCGA-91-6836 
        1.22        41.33         1.28         1.15         0.36 

  REG1B MUTATED REG1B WILD-TYPE 
           0.46            0.07 
  REG1B MUTATED REG1B WILD-TYPE 
          71.47           85.32 
  REG1B MUTATED REG1B WILD-TYPE 
          14.04           13.87 
[1] "0.5 - 71.5 (14.0)" "0.1 - 85.3 (13.9)"
     TCGA-05-4249      TCGA-05-4250      TCGA-05-4382      TCGA-05-4384 
"REG1B WILD-TYPE" "REG1B WILD-TYPE" "REG1B WILD-TYPE" "REG1B WILD-TYPE" 
     TCGA-05-4390      TCGA-05-4396      TCGA-05-4397      TCGA-05-4398 
"REG1B WILD-TYPE" "REG1B WILD-TYPE" "REG1B WILD-TYPE" "REG1B WILD-TYPE" 
     TCGA-05-4402      TCGA-05-4405      TCGA-05-4415      TCGA-05-4417 
"REG1B WILD-TYPE" "REG1B WILD-TYPE" "REG1B WILD-TYPE"   "REG1B MUTATED" 
     TCGA-05-4418      TCGA-05-4420      TCGA-05-4424      TCGA-05-4426 
"REG1B WILD-TYPE" "REG1B WILD-TYPE" "REG1B WILD-TYPE" "REG1B WILD-TYPE" 
     TCGA-05-4427      TCGA-05-4430      TCGA-05-4432      TCGA-05-4433 
  "REG1B MUTATED" "REG1B WILD-TYPE" "REG1B WILD-TYPE" "REG1B WILD-TYPE" 
     TCGA-05-4434      TCGA-05-5420      TCGA-05-5423      TCGA-05-5425 
"REG1B WILD-TYPE" "REG1B WILD-TYPE" "REG1B WILD-TYPE" "REG1B WILD-TYPE" 
     TCGA-05-5429      TCGA-05-5715      TCGA-35-3615      TCGA-35-4122 
"REG1B WILD-TYPE" "REG1B WILD-TYPE"   "REG1B MUTATED"   "REG1B MUTATED" 
     TCGA-35-4123      TCGA-35-5375      TCGA-38-4625      TCGA-38-4626 
"REG1B WILD-TYPE"   "REG1B MUTATED" "REG1B WILD-TYPE" "REG1B WILD-TYPE" 
     TCGA-38-4627      TCGA-38-4628      TCGA-38-4629      TCGA-38-4630 
"REG1B WILD-TYPE" "REG1B WILD-TYPE" "REG1B WILD-TYPE" "REG1B WILD-TYPE" 
     TCGA-38-4631      TCGA-38-4632      TCGA-38-6178      TCGA-44-2655 
"REG1B WILD-TYPE" "REG1B WILD-TYPE" "REG1B WILD-TYPE" "REG1B WILD-TYPE" 
     TCGA-44-2656      TCGA-44-2657      TCGA-44-2659      TCGA-44-2661 
"REG1B WILD-TYPE"   "REG1B MUTATED" "REG1B WILD-TYPE" "REG1B WILD-TYPE" 
     TCGA-44-2662      TCGA-44-2665      TCGA-44-2666      TCGA-44-2668 
"REG1B WILD-TYPE" "REG1B WILD-TYPE" "REG1B WILD-TYPE" "REG1B WILD-TYPE" 
     TCGA-44-3396      TCGA-44-3398      TCGA-44-3918      TCGA-44-3919 
"REG1B WILD-TYPE" "REG1B WILD-TYPE"   "REG1B MUTATED" "REG1B WILD-TYPE" 
     TCGA-44-4112      TCGA-44-5643      TCGA-44-5645      TCGA-44-6144 
"REG1B WILD-TYPE" "REG1B WILD-TYPE" "REG1B WILD-TYPE" "REG1B WILD-TYPE" 
     TCGA-44-6145      TCGA-44-6146      TCGA-44-6147      TCGA-44-6148 
"REG1B WILD-TYPE" "REG1B WILD-TYPE" "REG1B WILD-TYPE" "REG1B WILD-TYPE" 
     TCGA-44-6774      TCGA-44-6775      TCGA-44-6776      TCGA-44-6777 
"REG1B WILD-TYPE" "REG1B WILD-TYPE" "REG1B WILD-TYPE" "REG1B WILD-TYPE" 
     TCGA-44-6778      TCGA-44-6779      TCGA-49-4486      TCGA-49-4487 
"REG1B WILD-TYPE" "REG1B WILD-TYPE" "REG1B WILD-TYPE" "REG1B WILD-TYPE" 
     TCGA-49-4488      TCGA-49-4490      TCGA-49-4494      TCGA-49-4501 
"REG1B WILD-TYPE" "REG1B WILD-TYPE" "REG1B WILD-TYPE" "REG1B WILD-TYPE" 
     TCGA-49-4505      TCGA-49-4506      TCGA-49-4507      TCGA-49-4510 
"REG1B WILD-TYPE" "REG1B WILD-TYPE" "REG1B WILD-TYPE"   "REG1B MUTATED" 
     TCGA-49-4512      TCGA-49-4514      TCGA-49-6742      TCGA-49-6743 
"REG1B WILD-TYPE" "REG1B WILD-TYPE" "REG1B WILD-TYPE" "REG1B WILD-TYPE" 
     TCGA-49-6744      TCGA-49-6745      TCGA-50-5044      TCGA-50-5045 
"REG1B WILD-TYPE" "REG1B WILD-TYPE" "REG1B WILD-TYPE"   "REG1B MUTATED" 
     TCGA-50-5049      TCGA-50-5051      TCGA-50-5055      TCGA-50-5066 
  "REG1B MUTATED" "REG1B WILD-TYPE" "REG1B WILD-TYPE" "REG1B WILD-TYPE" 
     TCGA-50-5068      TCGA-50-5072      TCGA-50-5930      TCGA-50-5931 
"REG1B WILD-TYPE" "REG1B WILD-TYPE" "REG1B WILD-TYPE" "REG1B WILD-TYPE" 
     TCGA-50-5932      TCGA-50-5933      TCGA-50-5935      TCGA-50-5936 
"REG1B WILD-TYPE" "REG1B WILD-TYPE" "REG1B WILD-TYPE" "REG1B WILD-TYPE" 
     TCGA-50-5939      TCGA-50-5941      TCGA-50-5942      TCGA-50-5944 
"REG1B WILD-TYPE" "REG1B WILD-TYPE" "REG1B WILD-TYPE" "REG1B WILD-TYPE" 
     TCGA-50-5946      TCGA-50-6590      TCGA-50-6591      TCGA-50-6592 
"REG1B WILD-TYPE" "REG1B WILD-TYPE" "REG1B WILD-TYPE" "REG1B WILD-TYPE" 
     TCGA-50-6593      TCGA-50-6594      TCGA-50-6595      TCGA-50-6597 
"REG1B WILD-TYPE" "REG1B WILD-TYPE" "REG1B WILD-TYPE" "REG1B WILD-TYPE" 
     TCGA-55-1592      TCGA-55-1594      TCGA-55-1595      TCGA-55-1596 
"REG1B WILD-TYPE" "REG1B WILD-TYPE" "REG1B WILD-TYPE" "REG1B WILD-TYPE" 
     TCGA-55-5899      TCGA-55-6543      TCGA-55-6642      TCGA-55-6712 
"REG1B WILD-TYPE" "REG1B WILD-TYPE" "REG1B WILD-TYPE" "REG1B WILD-TYPE" 
     TCGA-64-1676      TCGA-64-1677      TCGA-64-1678      TCGA-64-1680 
"REG1B WILD-TYPE" "REG1B WILD-TYPE" "REG1B WILD-TYPE" "REG1B WILD-TYPE" 
     TCGA-64-5774      TCGA-64-5775      TCGA-64-5778      TCGA-64-5779 
"REG1B WILD-TYPE" "REG1B WILD-TYPE" "REG1B WILD-TYPE" "REG1B WILD-TYPE" 
     TCGA-64-5781      TCGA-64-5815      TCGA-67-3770      TCGA-67-3771 
"REG1B WILD-TYPE" "REG1B WILD-TYPE" "REG1B WILD-TYPE" "REG1B WILD-TYPE" 
     TCGA-67-3772      TCGA-67-3773      TCGA-67-3774      TCGA-67-6215 
"REG1B WILD-TYPE" "REG1B WILD-TYPE" "REG1B WILD-TYPE" "REG1B WILD-TYPE" 
     TCGA-67-6216      TCGA-67-6217      TCGA-71-6725      TCGA-73-4658 
"REG1B WILD-TYPE" "REG1B WILD-TYPE" "REG1B WILD-TYPE" "REG1B WILD-TYPE" 
     TCGA-73-4659      TCGA-73-4662      TCGA-73-4666      TCGA-73-4668 
"REG1B WILD-TYPE" "REG1B WILD-TYPE" "REG1B WILD-TYPE"   "REG1B MUTATED" 
     TCGA-73-4670      TCGA-73-4675      TCGA-73-4676      TCGA-73-4677 
"REG1B WILD-TYPE" "REG1B WILD-TYPE"   "REG1B MUTATED" "REG1B WILD-TYPE" 
     TCGA-91-6828      TCGA-91-6829      TCGA-91-6831      TCGA-91-6835 
"REG1B WILD-TYPE" "REG1B WILD-TYPE" "REG1B WILD-TYPE" "REG1B WILD-TYPE" 
     TCGA-91-6836 
"REG1B WILD-TYPE" 
     TCGA-05-4249      TCGA-05-4250      TCGA-05-4382      TCGA-05-4384 
"REG1B WILD-TYPE" "REG1B WILD-TYPE" "REG1B WILD-TYPE" "REG1B WILD-TYPE" 
     TCGA-05-4390      TCGA-05-4396      TCGA-05-4397      TCGA-05-4398 
"REG1B WILD-TYPE" "REG1B WILD-TYPE" "REG1B WILD-TYPE" "REG1B WILD-TYPE" 
     TCGA-05-4402      TCGA-05-4405      TCGA-05-4415      TCGA-05-4417 
"REG1B WILD-TYPE" "REG1B WILD-TYPE" "REG1B WILD-TYPE"   "REG1B MUTATED" 
     TCGA-05-4418      TCGA-05-4420      TCGA-05-4424      TCGA-05-4426 
"REG1B WILD-TYPE" "REG1B WILD-TYPE" "REG1B WILD-TYPE" "REG1B WILD-TYPE" 
     TCGA-05-4427      TCGA-05-4430      TCGA-05-4432      TCGA-05-4433 
  "REG1B MUTATED" "REG1B WILD-TYPE" "REG1B WILD-TYPE" "REG1B WILD-TYPE" 
     TCGA-05-4434      TCGA-05-5420      TCGA-05-5423      TCGA-05-5425 
"REG1B WILD-TYPE" "REG1B WILD-TYPE" "REG1B WILD-TYPE" "REG1B WILD-TYPE" 
     TCGA-05-5429      TCGA-05-5715      TCGA-35-3615      TCGA-35-4122 
"REG1B WILD-TYPE" "REG1B WILD-TYPE"   "REG1B MUTATED"   "REG1B MUTATED" 
     TCGA-35-4123      TCGA-35-5375      TCGA-38-4625      TCGA-38-4626 
"REG1B WILD-TYPE"   "REG1B MUTATED" "REG1B WILD-TYPE" "REG1B WILD-TYPE" 
     TCGA-38-4627      TCGA-38-4628      TCGA-38-4629      TCGA-38-4630 
"REG1B WILD-TYPE" "REG1B WILD-TYPE" "REG1B WILD-TYPE" "REG1B WILD-TYPE" 
     TCGA-38-4631      TCGA-38-4632      TCGA-38-6178      TCGA-44-2655 
"REG1B WILD-TYPE" "REG1B WILD-TYPE" "REG1B WILD-TYPE" "REG1B WILD-TYPE" 
     TCGA-44-2656      TCGA-44-2657      TCGA-44-2659      TCGA-44-2661 
"REG1B WILD-TYPE"   "REG1B MUTATED" "REG1B WILD-TYPE" "REG1B WILD-TYPE" 
     TCGA-44-2662      TCGA-44-2665      TCGA-44-2666      TCGA-44-2668 
"REG1B WILD-TYPE" "REG1B WILD-TYPE" "REG1B WILD-TYPE" "REG1B WILD-TYPE" 
     TCGA-44-3396      TCGA-44-3398      TCGA-44-3918      TCGA-44-3919 
"REG1B WILD-TYPE" "REG1B WILD-TYPE"   "REG1B MUTATED" "REG1B WILD-TYPE" 
     TCGA-44-4112      TCGA-44-5643      TCGA-44-5645      TCGA-44-6144 
"REG1B WILD-TYPE" "REG1B WILD-TYPE" "REG1B WILD-TYPE" "REG1B WILD-TYPE" 
     TCGA-44-6145      TCGA-44-6146      TCGA-44-6147      TCGA-44-6148 
"REG1B WILD-TYPE" "REG1B WILD-TYPE" "REG1B WILD-TYPE" "REG1B WILD-TYPE" 
     TCGA-44-6774      TCGA-44-6775      TCGA-44-6776      TCGA-44-6777 
"REG1B WILD-TYPE" "REG1B WILD-TYPE" "REG1B WILD-TYPE" "REG1B WILD-TYPE" 
     TCGA-44-6778      TCGA-44-6779      TCGA-49-4486      TCGA-49-4487 
"REG1B WILD-TYPE" "REG1B WILD-TYPE" "REG1B WILD-TYPE" "REG1B WILD-TYPE" 
     TCGA-49-4488      TCGA-49-4490      TCGA-49-4494      TCGA-49-4501 
"REG1B WILD-TYPE" "REG1B WILD-TYPE" "REG1B WILD-TYPE" "REG1B WILD-TYPE" 
     TCGA-49-4505      TCGA-49-4506      TCGA-49-4507      TCGA-49-4510 
"REG1B WILD-TYPE" "REG1B WILD-TYPE" "REG1B WILD-TYPE"   "REG1B MUTATED" 
     TCGA-49-4512      TCGA-49-4514      TCGA-49-6742      TCGA-49-6743 
"REG1B WILD-TYPE" "REG1B WILD-TYPE" "REG1B WILD-TYPE" "REG1B WILD-TYPE" 
     TCGA-49-6744      TCGA-49-6745      TCGA-50-5044      TCGA-50-5045 
"REG1B WILD-TYPE" "REG1B WILD-TYPE" "REG1B WILD-TYPE"   "REG1B MUTATED" 
     TCGA-50-5049      TCGA-50-5051      TCGA-50-5055      TCGA-50-5066 
  "REG1B MUTATED" "REG1B WILD-TYPE" "REG1B WILD-TYPE" "REG1B WILD-TYPE" 
     TCGA-50-5068      TCGA-50-5072      TCGA-50-5930      TCGA-50-5931 
"REG1B WILD-TYPE" "REG1B WILD-TYPE" "REG1B WILD-TYPE" "REG1B WILD-TYPE" 
     TCGA-50-5932      TCGA-50-5933      TCGA-50-5935      TCGA-50-5936 
"REG1B WILD-TYPE" "REG1B WILD-TYPE" "REG1B WILD-TYPE" "REG1B WILD-TYPE" 
     TCGA-50-5939      TCGA-50-5941      TCGA-50-5942      TCGA-50-5944 
"REG1B WILD-TYPE" "REG1B WILD-TYPE" "REG1B WILD-TYPE" "REG1B WILD-TYPE" 
     TCGA-50-5946      TCGA-50-6590      TCGA-50-6591      TCGA-50-6592 
"REG1B WILD-TYPE" "REG1B WILD-TYPE" "REG1B WILD-TYPE" "REG1B WILD-TYPE" 
     TCGA-50-6593      TCGA-50-6594      TCGA-50-6595      TCGA-50-6597 
"REG1B WILD-TYPE" "REG1B WILD-TYPE" "REG1B WILD-TYPE" "REG1B WILD-TYPE" 
     TCGA-55-1592      TCGA-55-1594      TCGA-55-1595      TCGA-55-1596 
"REG1B WILD-TYPE" "REG1B WILD-TYPE" "REG1B WILD-TYPE" "REG1B WILD-TYPE" 
     TCGA-55-5899      TCGA-55-6543      TCGA-55-6642      TCGA-55-6712 
"REG1B WILD-TYPE" "REG1B WILD-TYPE" "REG1B WILD-TYPE" "REG1B WILD-TYPE" 
     TCGA-64-1676      TCGA-64-1677      TCGA-64-1678      TCGA-64-1680 
"REG1B WILD-TYPE" "REG1B WILD-TYPE" "REG1B WILD-TYPE" "REG1B WILD-TYPE" 
     TCGA-64-5774      TCGA-64-5775      TCGA-64-5778      TCGA-64-5779 
"REG1B WILD-TYPE" "REG1B WILD-TYPE" "REG1B WILD-TYPE" "REG1B WILD-TYPE" 
     TCGA-64-5781      TCGA-64-5815      TCGA-67-3770      TCGA-67-3771 
"REG1B WILD-TYPE" "REG1B WILD-TYPE" "REG1B WILD-TYPE" "REG1B WILD-TYPE" 
     TCGA-67-3772      TCGA-67-3773      TCGA-67-3774      TCGA-67-6215 
"REG1B WILD-TYPE" "REG1B WILD-TYPE" "REG1B WILD-TYPE" "REG1B WILD-TYPE" 
     TCGA-67-6216      TCGA-67-6217      TCGA-71-6725      TCGA-73-4658 
"REG1B WILD-TYPE" "REG1B WILD-TYPE" "REG1B WILD-TYPE" "REG1B WILD-TYPE" 
     TCGA-73-4659      TCGA-73-4662      TCGA-73-4666      TCGA-73-4668 
"REG1B WILD-TYPE" "REG1B WILD-TYPE" "REG1B WILD-TYPE"   "REG1B MUTATED" 
     TCGA-73-4670      TCGA-73-4675      TCGA-73-4676      TCGA-73-4677 
"REG1B WILD-TYPE" "REG1B WILD-TYPE"   "REG1B MUTATED" "REG1B WILD-TYPE" 
     TCGA-91-6828      TCGA-91-6829      TCGA-91-6831      TCGA-91-6835 
"REG1B WILD-TYPE" "REG1B WILD-TYPE" "REG1B WILD-TYPE" "REG1B WILD-TYPE" 
     TCGA-91-6836 
"REG1B WILD-TYPE" 
     TCGA-05-4249      TCGA-05-4250      TCGA-05-4382      TCGA-05-4384 
"REG1B WILD-TYPE" "REG1B WILD-TYPE" "REG1B WILD-TYPE" "REG1B WILD-TYPE" 
     TCGA-05-4390      TCGA-05-4396      TCGA-05-4397      TCGA-05-4398 
"REG1B WILD-TYPE" "REG1B WILD-TYPE" "REG1B WILD-TYPE" "REG1B WILD-TYPE" 
     TCGA-05-4402      TCGA-05-4405      TCGA-05-4415      TCGA-05-4417 
"REG1B WILD-TYPE" "REG1B WILD-TYPE" "REG1B WILD-TYPE"   "REG1B MUTATED" 
     TCGA-05-4418      TCGA-05-4420      TCGA-05-4424      TCGA-05-4426 
"REG1B WILD-TYPE" "REG1B WILD-TYPE" "REG1B WILD-TYPE" "REG1B WILD-TYPE" 
     TCGA-05-4427      TCGA-05-4430      TCGA-05-4432      TCGA-05-4433 
  "REG1B MUTATED" "REG1B WILD-TYPE" "REG1B WILD-TYPE" "REG1B WILD-TYPE" 
     TCGA-05-4434      TCGA-05-5420      TCGA-05-5423      TCGA-05-5425 
"REG1B WILD-TYPE" "REG1B WILD-TYPE" "REG1B WILD-TYPE" "REG1B WILD-TYPE" 
     TCGA-05-5429      TCGA-05-5715      TCGA-35-3615      TCGA-35-4122 
"REG1B WILD-TYPE" "REG1B WILD-TYPE"   "REG1B MUTATED"   "REG1B MUTATED" 
     TCGA-35-4123      TCGA-35-5375      TCGA-38-4625      TCGA-38-4626 
"REG1B WILD-TYPE"   "REG1B MUTATED" "REG1B WILD-TYPE" "REG1B WILD-TYPE" 
     TCGA-38-4627      TCGA-38-4628      TCGA-38-4629      TCGA-38-4630 
"REG1B WILD-TYPE" "REG1B WILD-TYPE" "REG1B WILD-TYPE" "REG1B WILD-TYPE" 
     TCGA-38-4631      TCGA-38-4632      TCGA-38-6178      TCGA-44-2655 
"REG1B WILD-TYPE" "REG1B WILD-TYPE" "REG1B WILD-TYPE" "REG1B WILD-TYPE" 
     TCGA-44-2656      TCGA-44-2657      TCGA-44-2659      TCGA-44-2661 
"REG1B WILD-TYPE"   "REG1B MUTATED" "REG1B WILD-TYPE" "REG1B WILD-TYPE" 
     TCGA-44-2662      TCGA-44-2665      TCGA-44-2666      TCGA-44-2668 
"REG1B WILD-TYPE" "REG1B WILD-TYPE" "REG1B WILD-TYPE" "REG1B WILD-TYPE" 
     TCGA-44-3396      TCGA-44-3398      TCGA-44-3918      TCGA-44-3919 
"REG1B WILD-TYPE" "REG1B WILD-TYPE"   "REG1B MUTATED" "REG1B WILD-TYPE" 
     TCGA-44-4112      TCGA-44-5643      TCGA-44-5645      TCGA-44-6144 
"REG1B WILD-TYPE" "REG1B WILD-TYPE" "REG1B WILD-TYPE" "REG1B WILD-TYPE" 
     TCGA-44-6145      TCGA-44-6146      TCGA-44-6147      TCGA-44-6148 
"REG1B WILD-TYPE" "REG1B WILD-TYPE" "REG1B WILD-TYPE" "REG1B WILD-TYPE" 
     TCGA-44-6774      TCGA-44-6775      TCGA-44-6776      TCGA-44-6777 
"REG1B WILD-TYPE" "REG1B WILD-TYPE" "REG1B WILD-TYPE" "REG1B WILD-TYPE" 
     TCGA-44-6778      TCGA-44-6779      TCGA-49-4486      TCGA-49-4487 
"REG1B WILD-TYPE" "REG1B WILD-TYPE" "REG1B WILD-TYPE" "REG1B WILD-TYPE" 
     TCGA-49-4488      TCGA-49-4490      TCGA-49-4494      TCGA-49-4501 
"REG1B WILD-TYPE" "REG1B WILD-TYPE" "REG1B WILD-TYPE" "REG1B WILD-TYPE" 
     TCGA-49-4505      TCGA-49-4506      TCGA-49-4507      TCGA-49-4510 
"REG1B WILD-TYPE" "REG1B WILD-TYPE" "REG1B WILD-TYPE"   "REG1B MUTATED" 
     TCGA-49-4512      TCGA-49-4514      TCGA-49-6742      TCGA-49-6743 
"REG1B WILD-TYPE" "REG1B WILD-TYPE" "REG1B WILD-TYPE" "REG1B WILD-TYPE" 
     TCGA-49-6744      TCGA-49-6745      TCGA-50-5044      TCGA-50-5045 
"REG1B WILD-TYPE" "REG1B WILD-TYPE" "REG1B WILD-TYPE"   "REG1B MUTATED" 
     TCGA-50-5049      TCGA-50-5051      TCGA-50-5055      TCGA-50-5066 
  "REG1B MUTATED" "REG1B WILD-TYPE" "REG1B WILD-TYPE" "REG1B WILD-TYPE" 
     TCGA-50-5068      TCGA-50-5072      TCGA-50-5930      TCGA-50-5931 
"REG1B WILD-TYPE" "REG1B WILD-TYPE" "REG1B WILD-TYPE" "REG1B WILD-TYPE" 
     TCGA-50-5932      TCGA-50-5933      TCGA-50-5935      TCGA-50-5936 
"REG1B WILD-TYPE" "REG1B WILD-TYPE" "REG1B WILD-TYPE" "REG1B WILD-TYPE" 
     TCGA-50-5939      TCGA-50-5941      TCGA-50-5942      TCGA-50-5944 
"REG1B WILD-TYPE" "REG1B WILD-TYPE" "REG1B WILD-TYPE" "REG1B WILD-TYPE" 
     TCGA-50-5946      TCGA-50-6590      TCGA-50-6591      TCGA-50-6592 
"REG1B WILD-TYPE" "REG1B WILD-TYPE" "REG1B WILD-TYPE" "REG1B WILD-TYPE" 
     TCGA-50-6593      TCGA-50-6594      TCGA-50-6595      TCGA-50-6597 
"REG1B WILD-TYPE" "REG1B WILD-TYPE" "REG1B WILD-TYPE" "REG1B WILD-TYPE" 
     TCGA-55-1592      TCGA-55-1594      TCGA-55-1595      TCGA-55-1596 
"REG1B WILD-TYPE" "REG1B WILD-TYPE" "REG1B WILD-TYPE" "REG1B WILD-TYPE" 
     TCGA-55-5899      TCGA-55-6543      TCGA-55-6642      TCGA-55-6712 
"REG1B WILD-TYPE" "REG1B WILD-TYPE" "REG1B WILD-TYPE" "REG1B WILD-TYPE" 
     TCGA-64-1676      TCGA-64-1677      TCGA-64-1678      TCGA-64-1680 
"REG1B WILD-TYPE" "REG1B WILD-TYPE" "REG1B WILD-TYPE" "REG1B WILD-TYPE" 
     TCGA-64-5774      TCGA-64-5775      TCGA-64-5778      TCGA-64-5779 
"REG1B WILD-TYPE" "REG1B WILD-TYPE" "REG1B WILD-TYPE" "REG1B WILD-TYPE" 
     TCGA-64-5781      TCGA-64-5815      TCGA-67-3770      TCGA-67-3771 
"REG1B WILD-TYPE" "REG1B WILD-TYPE" "REG1B WILD-TYPE" "REG1B WILD-TYPE" 
     TCGA-67-3772      TCGA-67-3773      TCGA-67-3774      TCGA-67-6215 
"REG1B WILD-TYPE" "REG1B WILD-TYPE" "REG1B WILD-TYPE" "REG1B WILD-TYPE" 
     TCGA-67-6216      TCGA-67-6217      TCGA-71-6725      TCGA-73-4658 
"REG1B WILD-TYPE" "REG1B WILD-TYPE" "REG1B WILD-TYPE" "REG1B WILD-TYPE" 
     TCGA-73-4659      TCGA-73-4662      TCGA-73-4666      TCGA-73-4668 
"REG1B WILD-TYPE" "REG1B WILD-TYPE" "REG1B WILD-TYPE"   "REG1B MUTATED" 
     TCGA-73-4670      TCGA-73-4675      TCGA-73-4676      TCGA-73-4677 
"REG1B WILD-TYPE" "REG1B WILD-TYPE"   "REG1B MUTATED" "REG1B WILD-TYPE" 
     TCGA-91-6828      TCGA-91-6829      TCGA-91-6831      TCGA-91-6835 
"REG1B WILD-TYPE" "REG1B WILD-TYPE" "REG1B WILD-TYPE" "REG1B WILD-TYPE" 
     TCGA-91-6836 
"REG1B WILD-TYPE" 
[1] "hr=" "2.1"
D25V2, continuous
D25V3, binary
[1] "tbl2"
                 cls
clus              [,1] [,2]
  REG1B MUTATED      7    5
  REG1B WILD-TYPE   86   74
        clus
vv       REG1B MUTATED REG1B WILD-TYPE
  FEMALE             7              86
  MALE               5              74
D25V4, continuous
D25V5, multiclass
D25V6, multiclass
    clus
vv   REG1B MUTATED REG1B WILD-TYPE
  T1             2              39
  T2            10              98
  T3             0              14
  T4             0               8
D25V7, multiclass
       clus
vv      REG1B MUTATED REG1B WILD-TYPE
  N0                5              90
  N1                5              32
  N2+N3             1              34
D25V8, multiclass
    clus
vv   REG1B MUTATED REG1B WILD-TYPE
  M0            12             125
  M1             0               9
  MX             0              22
D25V9, multiclass
     clus
vv    REG1B MUTATED REG1B WILD-TYPE
  I               7              81
  II              4              29
  III             1              38
  IV              0               9
D25V10, binary
[1] "tbl2"
                 cls
clus              [,1] [,2]
  REG1B MUTATED      3    9
  REG1B WILD-TYPE   13  147
     clus
vv    REG1B MUTATED REG1B WILD-TYPE
  NO              3              13
  YES             9             147
D25V11, continuous
D25V12, continuous
D25V13, multiclass
                                             clus
vv                                            REG1B MUTATED REG1B WILD-TYPE
  CURRENT REFORMED SMOKER FOR < OR = 15 YEARS             7              55
  CURRENT REFORMED SMOKER FOR > 15 YEARS                  1              45
  CURRENT SMOKER                                          1              27
  LIFELONG NON-SMOKER                                     1              23
D25V14, continuous

Clustering(26) Variable = LRRIQ3 MUTATION ANALYSIS
D26V1, survival
                  sevent
clus2               0  1
  LRRIQ3 MUTATED    6  3
  LRRIQ3 WILD-TYPE 93 47
  LRRIQ3 MUTATED LRRIQ3 WILD-TYPE 
               9              140 
  LRRIQ3 MUTATED LRRIQ3 WILD-TYPE 
               3               47 
$`LRRIQ3 MUTATED`
TCGA-05-4396 TCGA-05-4427 TCGA-05-4432 TCGA-44-6145 TCGA-50-5944 TCGA-50-6590 
        9.96        26.01        25.02         3.35        12.26        42.31 
TCGA-50-6593 TCGA-64-5779 TCGA-67-6215 
       11.05        16.67         0.89 

$`LRRIQ3 WILD-TYPE`
TCGA-05-4249 TCGA-05-4250 TCGA-05-4382 TCGA-05-4384 TCGA-05-4390 TCGA-05-4397 
       38.07         3.98        19.92        14.01        37.02        24.03 
TCGA-05-4398 TCGA-05-4402 TCGA-05-4405 TCGA-05-4415 TCGA-05-4417 TCGA-05-4418 
       47.05         8.02        20.05         2.96        14.93         8.98 
TCGA-05-4420 TCGA-05-4424 TCGA-05-4426 TCGA-05-4430 TCGA-05-4433 TCGA-05-4434 
       29.95        30.02        26.01        25.02        24.00        15.02 
TCGA-05-5420 TCGA-05-5423 TCGA-05-5425 TCGA-05-5429 TCGA-05-5715 TCGA-35-3615 
        1.02         4.96         2.96         0.99         2.04         0.46 
TCGA-35-4122 TCGA-35-4123 TCGA-35-5375 TCGA-38-4625 TCGA-38-4626 TCGA-38-4627 
        7.36         5.95         8.68        47.61        85.32        37.71 
TCGA-38-4628 TCGA-38-4629 TCGA-38-4630 TCGA-38-4631 TCGA-38-4632 TCGA-38-6178 
       49.02        28.37        35.28        11.64        44.61         5.19 
TCGA-44-2655 TCGA-44-2656 TCGA-44-2657 TCGA-44-2659 TCGA-44-2661 TCGA-44-2662 
       18.87        19.10        13.15        17.39         3.39        15.78 
TCGA-44-2665 TCGA-44-2666 TCGA-44-2668 TCGA-44-3396 TCGA-44-3398 TCGA-44-3918 
       13.15         3.19         8.09        10.22         8.32         6.44 
TCGA-44-3919 TCGA-44-4112 TCGA-44-5643 TCGA-44-5645 TCGA-44-6144 TCGA-44-6146 
        6.21         4.60         3.48         6.84         0.30         9.93 
TCGA-44-6147 TCGA-44-6148 TCGA-44-6774 TCGA-44-6775 TCGA-44-6776 TCGA-44-6777 
        7.76         3.12         5.42         2.70        63.72        32.45 
TCGA-44-6778 TCGA-44-6779 TCGA-49-4486 TCGA-49-4487 TCGA-49-4488 TCGA-49-4490 
       36.49        16.41        76.21        28.11        28.57        12.66 
TCGA-49-4494 TCGA-49-4501 TCGA-49-4505 TCGA-49-4506 TCGA-49-4507 TCGA-49-4510 
       35.54        46.72        14.07        32.84         8.81        29.46 
TCGA-49-4512 TCGA-49-4514 TCGA-49-6742 TCGA-49-6743 TCGA-49-6744 TCGA-49-6745 
       29.75        43.20        15.02        12.13        12.99         4.93 
TCGA-50-5044 TCGA-50-5045 TCGA-50-5049 TCGA-50-5051 TCGA-50-5055 TCGA-50-5066 
       20.48        71.47        48.82        14.96        25.81         9.76 
TCGA-50-5068 TCGA-50-5072 TCGA-50-5930 TCGA-50-5931 TCGA-50-5932 TCGA-50-5933 
       49.28         8.05         9.27         8.78        35.87        77.88 
TCGA-50-5935 TCGA-50-5936 TCGA-50-5939 TCGA-50-5941 TCGA-50-5942 TCGA-50-5946 
       21.47         8.45        15.12         9.37         4.44        11.47 
TCGA-50-6591 TCGA-50-6592 TCGA-50-6594 TCGA-50-6595 TCGA-50-6597 TCGA-55-1592 
        3.88        25.51        12.16         6.21        33.37        23.05 
TCGA-55-1594 TCGA-55-1595 TCGA-55-1596 TCGA-55-5899 TCGA-55-6543 TCGA-55-6642 
       38.73        48.62        45.17         2.86         0.07        32.61 
TCGA-55-6712 TCGA-64-1676 TCGA-64-1677 TCGA-64-1678 TCGA-64-1680 TCGA-64-5774 
        0.79        56.81        20.65        39.09        37.02        83.84 
TCGA-64-5775 TCGA-64-5778 TCGA-64-5781 TCGA-64-5815 TCGA-67-3770 TCGA-67-3771 
        0.10        30.44        39.52         7.33         0.99         1.97 
TCGA-67-3772 TCGA-67-3773 TCGA-67-3774 TCGA-67-6216 TCGA-67-6217 TCGA-71-6725 
        0.59         2.04         0.59         0.69        13.87         2.01 
TCGA-73-4658 TCGA-73-4659 TCGA-73-4662 TCGA-73-4666 TCGA-73-4668 TCGA-73-4670 
       52.57        23.38        29.95        20.28        15.35         0.46 
TCGA-73-4675 TCGA-73-4676 TCGA-73-4677 TCGA-91-6828 TCGA-91-6829 TCGA-91-6831 
        1.32         4.01         1.25         1.22        41.33         1.28 
TCGA-91-6835 TCGA-91-6836 
        1.15         0.36 

  LRRIQ3 MUTATED LRRIQ3 WILD-TYPE 
            0.89             0.07 
  LRRIQ3 MUTATED LRRIQ3 WILD-TYPE 
           42.31            85.32 
  LRRIQ3 MUTATED LRRIQ3 WILD-TYPE 
           12.26            13.94 
[1] "0.9 - 42.3 (12.3)" "0.1 - 85.3 (13.9)"
      TCGA-05-4249       TCGA-05-4250       TCGA-05-4382       TCGA-05-4384 
"LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" 
      TCGA-05-4390       TCGA-05-4396       TCGA-05-4397       TCGA-05-4398 
"LRRIQ3 WILD-TYPE"   "LRRIQ3 MUTATED" "LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" 
      TCGA-05-4402       TCGA-05-4405       TCGA-05-4415       TCGA-05-4417 
"LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" 
      TCGA-05-4418       TCGA-05-4420       TCGA-05-4424       TCGA-05-4426 
"LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" 
      TCGA-05-4427       TCGA-05-4430       TCGA-05-4432       TCGA-05-4433 
  "LRRIQ3 MUTATED" "LRRIQ3 WILD-TYPE"   "LRRIQ3 MUTATED" "LRRIQ3 WILD-TYPE" 
      TCGA-05-4434       TCGA-05-5420       TCGA-05-5423       TCGA-05-5425 
"LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" 
      TCGA-05-5429       TCGA-05-5715       TCGA-35-3615       TCGA-35-4122 
"LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" 
      TCGA-35-4123       TCGA-35-5375       TCGA-38-4625       TCGA-38-4626 
"LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" 
      TCGA-38-4627       TCGA-38-4628       TCGA-38-4629       TCGA-38-4630 
"LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" 
      TCGA-38-4631       TCGA-38-4632       TCGA-38-6178       TCGA-44-2655 
"LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" 
      TCGA-44-2656       TCGA-44-2657       TCGA-44-2659       TCGA-44-2661 
"LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" 
      TCGA-44-2662       TCGA-44-2665       TCGA-44-2666       TCGA-44-2668 
"LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" 
      TCGA-44-3396       TCGA-44-3398       TCGA-44-3918       TCGA-44-3919 
"LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" 
      TCGA-44-4112       TCGA-44-5643       TCGA-44-5645       TCGA-44-6144 
"LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" 
      TCGA-44-6145       TCGA-44-6146       TCGA-44-6147       TCGA-44-6148 
  "LRRIQ3 MUTATED" "LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" 
      TCGA-44-6774       TCGA-44-6775       TCGA-44-6776       TCGA-44-6777 
"LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" 
      TCGA-44-6778       TCGA-44-6779       TCGA-49-4486       TCGA-49-4487 
"LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" 
      TCGA-49-4488       TCGA-49-4490       TCGA-49-4494       TCGA-49-4501 
"LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" 
      TCGA-49-4505       TCGA-49-4506       TCGA-49-4507       TCGA-49-4510 
"LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" 
      TCGA-49-4512       TCGA-49-4514       TCGA-49-6742       TCGA-49-6743 
"LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" 
      TCGA-49-6744       TCGA-49-6745       TCGA-50-5044       TCGA-50-5045 
"LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" 
      TCGA-50-5049       TCGA-50-5051       TCGA-50-5055       TCGA-50-5066 
"LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" 
      TCGA-50-5068       TCGA-50-5072       TCGA-50-5930       TCGA-50-5931 
"LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" 
      TCGA-50-5932       TCGA-50-5933       TCGA-50-5935       TCGA-50-5936 
"LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" 
      TCGA-50-5939       TCGA-50-5941       TCGA-50-5942       TCGA-50-5944 
"LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE"   "LRRIQ3 MUTATED" 
      TCGA-50-5946       TCGA-50-6590       TCGA-50-6591       TCGA-50-6592 
"LRRIQ3 WILD-TYPE"   "LRRIQ3 MUTATED" "LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" 
      TCGA-50-6593       TCGA-50-6594       TCGA-50-6595       TCGA-50-6597 
  "LRRIQ3 MUTATED" "LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" 
      TCGA-55-1592       TCGA-55-1594       TCGA-55-1595       TCGA-55-1596 
"LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" 
      TCGA-55-5899       TCGA-55-6543       TCGA-55-6642       TCGA-55-6712 
"LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" 
      TCGA-64-1676       TCGA-64-1677       TCGA-64-1678       TCGA-64-1680 
"LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" 
      TCGA-64-5774       TCGA-64-5775       TCGA-64-5778       TCGA-64-5779 
"LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE"   "LRRIQ3 MUTATED" 
      TCGA-64-5781       TCGA-64-5815       TCGA-67-3770       TCGA-67-3771 
"LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" 
      TCGA-67-3772       TCGA-67-3773       TCGA-67-3774       TCGA-67-6215 
"LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE"   "LRRIQ3 MUTATED" 
      TCGA-67-6216       TCGA-67-6217       TCGA-71-6725       TCGA-73-4658 
"LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" 
      TCGA-73-4659       TCGA-73-4662       TCGA-73-4666       TCGA-73-4668 
"LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" 
      TCGA-73-4670       TCGA-73-4675       TCGA-73-4676       TCGA-73-4677 
"LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" 
      TCGA-91-6828       TCGA-91-6829       TCGA-91-6831       TCGA-91-6835 
"LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" 
      TCGA-91-6836 
"LRRIQ3 WILD-TYPE" 
      TCGA-05-4249       TCGA-05-4250       TCGA-05-4382       TCGA-05-4384 
"LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" 
      TCGA-05-4390       TCGA-05-4396       TCGA-05-4397       TCGA-05-4398 
"LRRIQ3 WILD-TYPE"   "LRRIQ3 MUTATED" "LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" 
      TCGA-05-4402       TCGA-05-4405       TCGA-05-4415       TCGA-05-4417 
"LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" 
      TCGA-05-4418       TCGA-05-4420       TCGA-05-4424       TCGA-05-4426 
"LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" 
      TCGA-05-4427       TCGA-05-4430       TCGA-05-4432       TCGA-05-4433 
  "LRRIQ3 MUTATED" "LRRIQ3 WILD-TYPE"   "LRRIQ3 MUTATED" "LRRIQ3 WILD-TYPE" 
      TCGA-05-4434       TCGA-05-5420       TCGA-05-5423       TCGA-05-5425 
"LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" 
      TCGA-05-5429       TCGA-05-5715       TCGA-35-3615       TCGA-35-4122 
"LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" 
      TCGA-35-4123       TCGA-35-5375       TCGA-38-4625       TCGA-38-4626 
"LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" 
      TCGA-38-4627       TCGA-38-4628       TCGA-38-4629       TCGA-38-4630 
"LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" 
      TCGA-38-4631       TCGA-38-4632       TCGA-38-6178       TCGA-44-2655 
"LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" 
      TCGA-44-2656       TCGA-44-2657       TCGA-44-2659       TCGA-44-2661 
"LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" 
      TCGA-44-2662       TCGA-44-2665       TCGA-44-2666       TCGA-44-2668 
"LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" 
      TCGA-44-3396       TCGA-44-3398       TCGA-44-3918       TCGA-44-3919 
"LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" 
      TCGA-44-4112       TCGA-44-5643       TCGA-44-5645       TCGA-44-6144 
"LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" 
      TCGA-44-6145       TCGA-44-6146       TCGA-44-6147       TCGA-44-6148 
  "LRRIQ3 MUTATED" "LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" 
      TCGA-44-6774       TCGA-44-6775       TCGA-44-6776       TCGA-44-6777 
"LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" 
      TCGA-44-6778       TCGA-44-6779       TCGA-49-4486       TCGA-49-4487 
"LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" 
      TCGA-49-4488       TCGA-49-4490       TCGA-49-4494       TCGA-49-4501 
"LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" 
      TCGA-49-4505       TCGA-49-4506       TCGA-49-4507       TCGA-49-4510 
"LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" 
      TCGA-49-4512       TCGA-49-4514       TCGA-49-6742       TCGA-49-6743 
"LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" 
      TCGA-49-6744       TCGA-49-6745       TCGA-50-5044       TCGA-50-5045 
"LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" 
      TCGA-50-5049       TCGA-50-5051       TCGA-50-5055       TCGA-50-5066 
"LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" 
      TCGA-50-5068       TCGA-50-5072       TCGA-50-5930       TCGA-50-5931 
"LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" 
      TCGA-50-5932       TCGA-50-5933       TCGA-50-5935       TCGA-50-5936 
"LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" 
      TCGA-50-5939       TCGA-50-5941       TCGA-50-5942       TCGA-50-5944 
"LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE"   "LRRIQ3 MUTATED" 
      TCGA-50-5946       TCGA-50-6590       TCGA-50-6591       TCGA-50-6592 
"LRRIQ3 WILD-TYPE"   "LRRIQ3 MUTATED" "LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" 
      TCGA-50-6593       TCGA-50-6594       TCGA-50-6595       TCGA-50-6597 
  "LRRIQ3 MUTATED" "LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" 
      TCGA-55-1592       TCGA-55-1594       TCGA-55-1595       TCGA-55-1596 
"LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" 
      TCGA-55-5899       TCGA-55-6543       TCGA-55-6642       TCGA-55-6712 
"LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" 
      TCGA-64-1676       TCGA-64-1677       TCGA-64-1678       TCGA-64-1680 
"LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" 
      TCGA-64-5774       TCGA-64-5775       TCGA-64-5778       TCGA-64-5779 
"LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE"   "LRRIQ3 MUTATED" 
      TCGA-64-5781       TCGA-64-5815       TCGA-67-3770       TCGA-67-3771 
"LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" 
      TCGA-67-3772       TCGA-67-3773       TCGA-67-3774       TCGA-67-6215 
"LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE"   "LRRIQ3 MUTATED" 
      TCGA-67-6216       TCGA-67-6217       TCGA-71-6725       TCGA-73-4658 
"LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" 
      TCGA-73-4659       TCGA-73-4662       TCGA-73-4666       TCGA-73-4668 
"LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" 
      TCGA-73-4670       TCGA-73-4675       TCGA-73-4676       TCGA-73-4677 
"LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" 
      TCGA-91-6828       TCGA-91-6829       TCGA-91-6831       TCGA-91-6835 
"LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" 
      TCGA-91-6836 
"LRRIQ3 WILD-TYPE" 
      TCGA-05-4249       TCGA-05-4250       TCGA-05-4382       TCGA-05-4384 
"LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" 
      TCGA-05-4390       TCGA-05-4396       TCGA-05-4397       TCGA-05-4398 
"LRRIQ3 WILD-TYPE"   "LRRIQ3 MUTATED" "LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" 
      TCGA-05-4402       TCGA-05-4405       TCGA-05-4415       TCGA-05-4417 
"LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" 
      TCGA-05-4418       TCGA-05-4420       TCGA-05-4424       TCGA-05-4426 
"LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" 
      TCGA-05-4427       TCGA-05-4430       TCGA-05-4432       TCGA-05-4433 
  "LRRIQ3 MUTATED" "LRRIQ3 WILD-TYPE"   "LRRIQ3 MUTATED" "LRRIQ3 WILD-TYPE" 
      TCGA-05-4434       TCGA-05-5420       TCGA-05-5423       TCGA-05-5425 
"LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" 
      TCGA-05-5429       TCGA-05-5715       TCGA-35-3615       TCGA-35-4122 
"LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" 
      TCGA-35-4123       TCGA-35-5375       TCGA-38-4625       TCGA-38-4626 
"LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" 
      TCGA-38-4627       TCGA-38-4628       TCGA-38-4629       TCGA-38-4630 
"LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" 
      TCGA-38-4631       TCGA-38-4632       TCGA-38-6178       TCGA-44-2655 
"LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" 
      TCGA-44-2656       TCGA-44-2657       TCGA-44-2659       TCGA-44-2661 
"LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" 
      TCGA-44-2662       TCGA-44-2665       TCGA-44-2666       TCGA-44-2668 
"LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" 
      TCGA-44-3396       TCGA-44-3398       TCGA-44-3918       TCGA-44-3919 
"LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" 
      TCGA-44-4112       TCGA-44-5643       TCGA-44-5645       TCGA-44-6144 
"LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" 
      TCGA-44-6145       TCGA-44-6146       TCGA-44-6147       TCGA-44-6148 
  "LRRIQ3 MUTATED" "LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" 
      TCGA-44-6774       TCGA-44-6775       TCGA-44-6776       TCGA-44-6777 
"LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" 
      TCGA-44-6778       TCGA-44-6779       TCGA-49-4486       TCGA-49-4487 
"LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" 
      TCGA-49-4488       TCGA-49-4490       TCGA-49-4494       TCGA-49-4501 
"LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" 
      TCGA-49-4505       TCGA-49-4506       TCGA-49-4507       TCGA-49-4510 
"LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" 
      TCGA-49-4512       TCGA-49-4514       TCGA-49-6742       TCGA-49-6743 
"LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" 
      TCGA-49-6744       TCGA-49-6745       TCGA-50-5044       TCGA-50-5045 
"LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" 
      TCGA-50-5049       TCGA-50-5051       TCGA-50-5055       TCGA-50-5066 
"LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" 
      TCGA-50-5068       TCGA-50-5072       TCGA-50-5930       TCGA-50-5931 
"LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" 
      TCGA-50-5932       TCGA-50-5933       TCGA-50-5935       TCGA-50-5936 
"LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" 
      TCGA-50-5939       TCGA-50-5941       TCGA-50-5942       TCGA-50-5944 
"LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE"   "LRRIQ3 MUTATED" 
      TCGA-50-5946       TCGA-50-6590       TCGA-50-6591       TCGA-50-6592 
"LRRIQ3 WILD-TYPE"   "LRRIQ3 MUTATED" "LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" 
      TCGA-50-6593       TCGA-50-6594       TCGA-50-6595       TCGA-50-6597 
  "LRRIQ3 MUTATED" "LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" 
      TCGA-55-1592       TCGA-55-1594       TCGA-55-1595       TCGA-55-1596 
"LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" 
      TCGA-55-5899       TCGA-55-6543       TCGA-55-6642       TCGA-55-6712 
"LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" 
      TCGA-64-1676       TCGA-64-1677       TCGA-64-1678       TCGA-64-1680 
"LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" 
      TCGA-64-5774       TCGA-64-5775       TCGA-64-5778       TCGA-64-5779 
"LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE"   "LRRIQ3 MUTATED" 
      TCGA-64-5781       TCGA-64-5815       TCGA-67-3770       TCGA-67-3771 
"LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" 
      TCGA-67-3772       TCGA-67-3773       TCGA-67-3774       TCGA-67-6215 
"LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE"   "LRRIQ3 MUTATED" 
      TCGA-67-6216       TCGA-67-6217       TCGA-71-6725       TCGA-73-4658 
"LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" 
      TCGA-73-4659       TCGA-73-4662       TCGA-73-4666       TCGA-73-4668 
"LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" 
      TCGA-73-4670       TCGA-73-4675       TCGA-73-4676       TCGA-73-4677 
"LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" 
      TCGA-91-6828       TCGA-91-6829       TCGA-91-6831       TCGA-91-6835 
"LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" 
      TCGA-91-6836 
"LRRIQ3 WILD-TYPE" 
[1] "hr=" "1.4"
D26V2, continuous
D26V3, binary
[1] "tbl2"
                  cls
clus               [,1] [,2]
  LRRIQ3 MUTATED      6    4
  LRRIQ3 WILD-TYPE   87   75
        clus
vv       LRRIQ3 MUTATED LRRIQ3 WILD-TYPE
  FEMALE              6               87
  MALE                4               75
D26V4, continuous
D26V5, multiclass
D26V6, multiclass
    clus
vv   LRRIQ3 MUTATED LRRIQ3 WILD-TYPE
  T1              3               38
  T2              6              102
  T3              0               14
  T4              1                7
D26V7, multiclass
       clus
vv      LRRIQ3 MUTATED LRRIQ3 WILD-TYPE
  N0                 5               90
  N1                 3               34
  N2+N3              2               33
D26V8, multiclass
    clus
vv   LRRIQ3 MUTATED LRRIQ3 WILD-TYPE
  M0              9              128
  M1              0                9
  MX              1               21
D26V9, multiclass
     clus
vv    LRRIQ3 MUTATED LRRIQ3 WILD-TYPE
  I                5               83
  II               2               31
  III              3               36
  IV               0                9
D26V10, binary
[1] "tbl2"
                  cls
clus               [,1] [,2]
  LRRIQ3 MUTATED      0   10
  LRRIQ3 WILD-TYPE   16  146
     clus
vv    LRRIQ3 MUTATED LRRIQ3 WILD-TYPE
  NO               0               16
  YES             10              146
D26V11, continuous
D26V12, continuous
D26V13, multiclass
                                             clus
vv                                            LRRIQ3 MUTATED LRRIQ3 WILD-TYPE
  CURRENT REFORMED SMOKER FOR < OR = 15 YEARS              5               57
  CURRENT REFORMED SMOKER FOR > 15 YEARS                   2               44
  CURRENT SMOKER                                           1               27
  LIFELONG NON-SMOKER                                      1               23
D26V14, continuous

Clustering(27) Variable = ZNF804A MUTATION ANALYSIS
D27V1, survival
                   sevent
clus2                0  1
  ZNF804A MUTATED   22  5
  ZNF804A WILD-TYPE 77 45
  ZNF804A MUTATED ZNF804A WILD-TYPE 
               27               122 
  ZNF804A MUTATED ZNF804A WILD-TYPE 
                5                45 
$`ZNF804A MUTATED`
TCGA-05-4382 TCGA-05-4384 TCGA-05-4396 TCGA-05-4397 TCGA-05-4424 TCGA-05-4427 
       19.92        14.01         9.96        24.03        30.02        26.01 
TCGA-05-4432 TCGA-35-4123 TCGA-38-4625 TCGA-38-4626 TCGA-44-3398 TCGA-44-3918 
       25.02         5.95        47.61        85.32         8.32         6.44 
TCGA-44-6774 TCGA-44-6777 TCGA-44-6778 TCGA-49-4506 TCGA-49-6742 TCGA-50-5049 
        5.42        32.45        36.49        32.84        15.02        48.82 
TCGA-50-5942 TCGA-50-6594 TCGA-64-1676 TCGA-64-5778 TCGA-64-5781 TCGA-67-3771 
        4.44        12.16        56.81        30.44        39.52         1.97 
TCGA-73-4662 TCGA-73-4668 TCGA-91-6836 
       29.95        15.35         0.36 

$`ZNF804A WILD-TYPE`
TCGA-05-4249 TCGA-05-4250 TCGA-05-4390 TCGA-05-4398 TCGA-05-4402 TCGA-05-4405 
       38.07         3.98        37.02        47.05         8.02        20.05 
TCGA-05-4415 TCGA-05-4417 TCGA-05-4418 TCGA-05-4420 TCGA-05-4426 TCGA-05-4430 
        2.96        14.93         8.98        29.95        26.01        25.02 
TCGA-05-4433 TCGA-05-4434 TCGA-05-5420 TCGA-05-5423 TCGA-05-5425 TCGA-05-5429 
       24.00        15.02         1.02         4.96         2.96         0.99 
TCGA-05-5715 TCGA-35-3615 TCGA-35-4122 TCGA-35-5375 TCGA-38-4627 TCGA-38-4628 
        2.04         0.46         7.36         8.68        37.71        49.02 
TCGA-38-4629 TCGA-38-4630 TCGA-38-4631 TCGA-38-4632 TCGA-38-6178 TCGA-44-2655 
       28.37        35.28        11.64        44.61         5.19        18.87 
TCGA-44-2656 TCGA-44-2657 TCGA-44-2659 TCGA-44-2661 TCGA-44-2662 TCGA-44-2665 
       19.10        13.15        17.39         3.39        15.78        13.15 
TCGA-44-2666 TCGA-44-2668 TCGA-44-3396 TCGA-44-3919 TCGA-44-4112 TCGA-44-5643 
        3.19         8.09        10.22         6.21         4.60         3.48 
TCGA-44-5645 TCGA-44-6144 TCGA-44-6145 TCGA-44-6146 TCGA-44-6147 TCGA-44-6148 
        6.84         0.30         3.35         9.93         7.76         3.12 
TCGA-44-6775 TCGA-44-6776 TCGA-44-6779 TCGA-49-4486 TCGA-49-4487 TCGA-49-4488 
        2.70        63.72        16.41        76.21        28.11        28.57 
TCGA-49-4490 TCGA-49-4494 TCGA-49-4501 TCGA-49-4505 TCGA-49-4507 TCGA-49-4510 
       12.66        35.54        46.72        14.07         8.81        29.46 
TCGA-49-4512 TCGA-49-4514 TCGA-49-6743 TCGA-49-6744 TCGA-49-6745 TCGA-50-5044 
       29.75        43.20        12.13        12.99         4.93        20.48 
TCGA-50-5045 TCGA-50-5051 TCGA-50-5055 TCGA-50-5066 TCGA-50-5068 TCGA-50-5072 
       71.47        14.96        25.81         9.76        49.28         8.05 
TCGA-50-5930 TCGA-50-5931 TCGA-50-5932 TCGA-50-5933 TCGA-50-5935 TCGA-50-5936 
        9.27         8.78        35.87        77.88        21.47         8.45 
TCGA-50-5939 TCGA-50-5941 TCGA-50-5944 TCGA-50-5946 TCGA-50-6590 TCGA-50-6591 
       15.12         9.37        12.26        11.47        42.31         3.88 
TCGA-50-6592 TCGA-50-6593 TCGA-50-6595 TCGA-50-6597 TCGA-55-1592 TCGA-55-1594 
       25.51        11.05         6.21        33.37        23.05        38.73 
TCGA-55-1595 TCGA-55-1596 TCGA-55-5899 TCGA-55-6543 TCGA-55-6642 TCGA-55-6712 
       48.62        45.17         2.86         0.07        32.61         0.79 
TCGA-64-1677 TCGA-64-1678 TCGA-64-1680 TCGA-64-5774 TCGA-64-5775 TCGA-64-5779 
       20.65        39.09        37.02        83.84         0.10        16.67 
TCGA-64-5815 TCGA-67-3770 TCGA-67-3772 TCGA-67-3773 TCGA-67-3774 TCGA-67-6215 
        7.33         0.99         0.59         2.04         0.59         0.89 
TCGA-67-6216 TCGA-67-6217 TCGA-71-6725 TCGA-73-4658 TCGA-73-4659 TCGA-73-4666 
        0.69        13.87         2.01        52.57        23.38        20.28 
TCGA-73-4670 TCGA-73-4675 TCGA-73-4676 TCGA-73-4677 TCGA-91-6828 TCGA-91-6829 
        0.46         1.32         4.01         1.25         1.22        41.33 
TCGA-91-6831 TCGA-91-6835 
        1.28         1.15 

  ZNF804A MUTATED ZNF804A WILD-TYPE 
             0.36              0.07 
  ZNF804A MUTATED ZNF804A WILD-TYPE 
            85.32             83.84 
  ZNF804A MUTATED ZNF804A WILD-TYPE 
            24.03             12.46 
[1] "0.4 - 85.3 (24.0)" "0.1 - 83.8 (12.5)"
       TCGA-05-4249        TCGA-05-4250        TCGA-05-4382        TCGA-05-4384 
"ZNF804A WILD-TYPE" "ZNF804A WILD-TYPE"   "ZNF804A MUTATED"   "ZNF804A MUTATED" 
       TCGA-05-4390        TCGA-05-4396        TCGA-05-4397        TCGA-05-4398 
"ZNF804A WILD-TYPE"   "ZNF804A MUTATED"   "ZNF804A MUTATED" "ZNF804A WILD-TYPE" 
       TCGA-05-4402        TCGA-05-4405        TCGA-05-4415        TCGA-05-4417 
"ZNF804A WILD-TYPE" "ZNF804A WILD-TYPE" "ZNF804A WILD-TYPE" "ZNF804A WILD-TYPE" 
       TCGA-05-4418        TCGA-05-4420        TCGA-05-4424        TCGA-05-4426 
"ZNF804A WILD-TYPE" "ZNF804A WILD-TYPE"   "ZNF804A MUTATED" "ZNF804A WILD-TYPE" 
       TCGA-05-4427        TCGA-05-4430        TCGA-05-4432        TCGA-05-4433 
  "ZNF804A MUTATED" "ZNF804A WILD-TYPE"   "ZNF804A MUTATED" "ZNF804A WILD-TYPE" 
       TCGA-05-4434        TCGA-05-5420        TCGA-05-5423        TCGA-05-5425 
"ZNF804A WILD-TYPE" "ZNF804A WILD-TYPE" "ZNF804A WILD-TYPE" "ZNF804A WILD-TYPE" 
       TCGA-05-5429        TCGA-05-5715        TCGA-35-3615        TCGA-35-4122 
"ZNF804A WILD-TYPE" "ZNF804A WILD-TYPE" "ZNF804A WILD-TYPE" "ZNF804A WILD-TYPE" 
       TCGA-35-4123        TCGA-35-5375        TCGA-38-4625        TCGA-38-4626 
  "ZNF804A MUTATED" "ZNF804A WILD-TYPE"   "ZNF804A MUTATED"   "ZNF804A MUTATED" 
       TCGA-38-4627        TCGA-38-4628        TCGA-38-4629        TCGA-38-4630 
"ZNF804A WILD-TYPE" "ZNF804A WILD-TYPE" "ZNF804A WILD-TYPE" "ZNF804A WILD-TYPE" 
       TCGA-38-4631        TCGA-38-4632        TCGA-38-6178        TCGA-44-2655 
"ZNF804A WILD-TYPE" "ZNF804A WILD-TYPE" "ZNF804A WILD-TYPE" "ZNF804A WILD-TYPE" 
       TCGA-44-2656        TCGA-44-2657        TCGA-44-2659        TCGA-44-2661 
"ZNF804A WILD-TYPE" "ZNF804A WILD-TYPE" "ZNF804A WILD-TYPE" "ZNF804A WILD-TYPE" 
       TCGA-44-2662        TCGA-44-2665        TCGA-44-2666        TCGA-44-2668 
"ZNF804A WILD-TYPE" "ZNF804A WILD-TYPE" "ZNF804A WILD-TYPE" "ZNF804A WILD-TYPE" 
       TCGA-44-3396        TCGA-44-3398        TCGA-44-3918        TCGA-44-3919 
"ZNF804A WILD-TYPE"   "ZNF804A MUTATED"   "ZNF804A MUTATED" "ZNF804A WILD-TYPE" 
       TCGA-44-4112        TCGA-44-5643        TCGA-44-5645        TCGA-44-6144 
"ZNF804A WILD-TYPE" "ZNF804A WILD-TYPE" "ZNF804A WILD-TYPE" "ZNF804A WILD-TYPE" 
       TCGA-44-6145        TCGA-44-6146        TCGA-44-6147        TCGA-44-6148 
"ZNF804A WILD-TYPE" "ZNF804A WILD-TYPE" "ZNF804A WILD-TYPE" "ZNF804A WILD-TYPE" 
       TCGA-44-6774        TCGA-44-6775        TCGA-44-6776        TCGA-44-6777 
  "ZNF804A MUTATED" "ZNF804A WILD-TYPE" "ZNF804A WILD-TYPE"   "ZNF804A MUTATED" 
       TCGA-44-6778        TCGA-44-6779        TCGA-49-4486        TCGA-49-4487 
  "ZNF804A MUTATED" "ZNF804A WILD-TYPE" "ZNF804A WILD-TYPE" "ZNF804A WILD-TYPE" 
       TCGA-49-4488        TCGA-49-4490        TCGA-49-4494        TCGA-49-4501 
"ZNF804A WILD-TYPE" "ZNF804A WILD-TYPE" "ZNF804A WILD-TYPE" "ZNF804A WILD-TYPE" 
       TCGA-49-4505        TCGA-49-4506        TCGA-49-4507        TCGA-49-4510 
"ZNF804A WILD-TYPE"   "ZNF804A MUTATED" "ZNF804A WILD-TYPE" "ZNF804A WILD-TYPE" 
       TCGA-49-4512        TCGA-49-4514        TCGA-49-6742        TCGA-49-6743 
"ZNF804A WILD-TYPE" "ZNF804A WILD-TYPE"   "ZNF804A MUTATED" "ZNF804A WILD-TYPE" 
       TCGA-49-6744        TCGA-49-6745        TCGA-50-5044        TCGA-50-5045 
"ZNF804A WILD-TYPE" "ZNF804A WILD-TYPE" "ZNF804A WILD-TYPE" "ZNF804A WILD-TYPE" 
       TCGA-50-5049        TCGA-50-5051        TCGA-50-5055        TCGA-50-5066 
  "ZNF804A MUTATED" "ZNF804A WILD-TYPE" "ZNF804A WILD-TYPE" "ZNF804A WILD-TYPE" 
       TCGA-50-5068        TCGA-50-5072        TCGA-50-5930        TCGA-50-5931 
"ZNF804A WILD-TYPE" "ZNF804A WILD-TYPE" "ZNF804A WILD-TYPE" "ZNF804A WILD-TYPE" 
       TCGA-50-5932        TCGA-50-5933        TCGA-50-5935        TCGA-50-5936 
"ZNF804A WILD-TYPE" "ZNF804A WILD-TYPE" "ZNF804A WILD-TYPE" "ZNF804A WILD-TYPE" 
       TCGA-50-5939        TCGA-50-5941        TCGA-50-5942        TCGA-50-5944 
"ZNF804A WILD-TYPE" "ZNF804A WILD-TYPE"   "ZNF804A MUTATED" "ZNF804A WILD-TYPE" 
       TCGA-50-5946        TCGA-50-6590        TCGA-50-6591        TCGA-50-6592 
"ZNF804A WILD-TYPE" "ZNF804A WILD-TYPE" "ZNF804A WILD-TYPE" "ZNF804A WILD-TYPE" 
       TCGA-50-6593        TCGA-50-6594        TCGA-50-6595        TCGA-50-6597 
"ZNF804A WILD-TYPE"   "ZNF804A MUTATED" "ZNF804A WILD-TYPE" "ZNF804A WILD-TYPE" 
       TCGA-55-1592        TCGA-55-1594        TCGA-55-1595        TCGA-55-1596 
"ZNF804A WILD-TYPE" "ZNF804A WILD-TYPE" "ZNF804A WILD-TYPE" "ZNF804A WILD-TYPE" 
       TCGA-55-5899        TCGA-55-6543        TCGA-55-6642        TCGA-55-6712 
"ZNF804A WILD-TYPE" "ZNF804A WILD-TYPE" "ZNF804A WILD-TYPE" "ZNF804A WILD-TYPE" 
       TCGA-64-1676        TCGA-64-1677        TCGA-64-1678        TCGA-64-1680 
  "ZNF804A MUTATED" "ZNF804A WILD-TYPE" "ZNF804A WILD-TYPE" "ZNF804A WILD-TYPE" 
       TCGA-64-5774        TCGA-64-5775        TCGA-64-5778        TCGA-64-5779 
"ZNF804A WILD-TYPE" "ZNF804A WILD-TYPE"   "ZNF804A MUTATED" "ZNF804A WILD-TYPE" 
       TCGA-64-5781        TCGA-64-5815        TCGA-67-3770        TCGA-67-3771 
  "ZNF804A MUTATED" "ZNF804A WILD-TYPE" "ZNF804A WILD-TYPE"   "ZNF804A MUTATED" 
       TCGA-67-3772        TCGA-67-3773        TCGA-67-3774        TCGA-67-6215 
"ZNF804A WILD-TYPE" "ZNF804A WILD-TYPE" "ZNF804A WILD-TYPE" "ZNF804A WILD-TYPE" 
       TCGA-67-6216        TCGA-67-6217        TCGA-71-6725        TCGA-73-4658 
"ZNF804A WILD-TYPE" "ZNF804A WILD-TYPE" "ZNF804A WILD-TYPE" "ZNF804A WILD-TYPE" 
       TCGA-73-4659        TCGA-73-4662        TCGA-73-4666        TCGA-73-4668 
"ZNF804A WILD-TYPE"   "ZNF804A MUTATED" "ZNF804A WILD-TYPE"   "ZNF804A MUTATED" 
       TCGA-73-4670        TCGA-73-4675        TCGA-73-4676        TCGA-73-4677 
"ZNF804A WILD-TYPE" "ZNF804A WILD-TYPE" "ZNF804A WILD-TYPE" "ZNF804A WILD-TYPE" 
       TCGA-91-6828        TCGA-91-6829        TCGA-91-6831        TCGA-91-6835 
"ZNF804A WILD-TYPE" "ZNF804A WILD-TYPE" "ZNF804A WILD-TYPE" "ZNF804A WILD-TYPE" 
       TCGA-91-6836 
  "ZNF804A MUTATED" 
       TCGA-05-4249        TCGA-05-4250        TCGA-05-4382        TCGA-05-4384 
"ZNF804A WILD-TYPE" "ZNF804A WILD-TYPE"   "ZNF804A MUTATED"   "ZNF804A MUTATED" 
       TCGA-05-4390        TCGA-05-4396        TCGA-05-4397        TCGA-05-4398 
"ZNF804A WILD-TYPE"   "ZNF804A MUTATED"   "ZNF804A MUTATED" "ZNF804A WILD-TYPE" 
       TCGA-05-4402        TCGA-05-4405        TCGA-05-4415        TCGA-05-4417 
"ZNF804A WILD-TYPE" "ZNF804A WILD-TYPE" "ZNF804A WILD-TYPE" "ZNF804A WILD-TYPE" 
       TCGA-05-4418        TCGA-05-4420        TCGA-05-4424        TCGA-05-4426 
"ZNF804A WILD-TYPE" "ZNF804A WILD-TYPE"   "ZNF804A MUTATED" "ZNF804A WILD-TYPE" 
       TCGA-05-4427        TCGA-05-4430        TCGA-05-4432        TCGA-05-4433 
  "ZNF804A MUTATED" "ZNF804A WILD-TYPE"   "ZNF804A MUTATED" "ZNF804A WILD-TYPE" 
       TCGA-05-4434        TCGA-05-5420        TCGA-05-5423        TCGA-05-5425 
"ZNF804A WILD-TYPE" "ZNF804A WILD-TYPE" "ZNF804A WILD-TYPE" "ZNF804A WILD-TYPE" 
       TCGA-05-5429        TCGA-05-5715        TCGA-35-3615        TCGA-35-4122 
"ZNF804A WILD-TYPE" "ZNF804A WILD-TYPE" "ZNF804A WILD-TYPE" "ZNF804A WILD-TYPE" 
       TCGA-35-4123        TCGA-35-5375        TCGA-38-4625        TCGA-38-4626 
  "ZNF804A MUTATED" "ZNF804A WILD-TYPE"   "ZNF804A MUTATED"   "ZNF804A MUTATED" 
       TCGA-38-4627        TCGA-38-4628        TCGA-38-4629        TCGA-38-4630 
"ZNF804A WILD-TYPE" "ZNF804A WILD-TYPE" "ZNF804A WILD-TYPE" "ZNF804A WILD-TYPE" 
       TCGA-38-4631        TCGA-38-4632        TCGA-38-6178        TCGA-44-2655 
"ZNF804A WILD-TYPE" "ZNF804A WILD-TYPE" "ZNF804A WILD-TYPE" "ZNF804A WILD-TYPE" 
       TCGA-44-2656        TCGA-44-2657        TCGA-44-2659        TCGA-44-2661 
"ZNF804A WILD-TYPE" "ZNF804A WILD-TYPE" "ZNF804A WILD-TYPE" "ZNF804A WILD-TYPE" 
       TCGA-44-2662        TCGA-44-2665        TCGA-44-2666        TCGA-44-2668 
"ZNF804A WILD-TYPE" "ZNF804A WILD-TYPE" "ZNF804A WILD-TYPE" "ZNF804A WILD-TYPE" 
       TCGA-44-3396        TCGA-44-3398        TCGA-44-3918        TCGA-44-3919 
"ZNF804A WILD-TYPE"   "ZNF804A MUTATED"   "ZNF804A MUTATED" "ZNF804A WILD-TYPE" 
       TCGA-44-4112        TCGA-44-5643        TCGA-44-5645        TCGA-44-6144 
"ZNF804A WILD-TYPE" "ZNF804A WILD-TYPE" "ZNF804A WILD-TYPE" "ZNF804A WILD-TYPE" 
       TCGA-44-6145        TCGA-44-6146        TCGA-44-6147        TCGA-44-6148 
"ZNF804A WILD-TYPE" "ZNF804A WILD-TYPE" "ZNF804A WILD-TYPE" "ZNF804A WILD-TYPE" 
       TCGA-44-6774        TCGA-44-6775        TCGA-44-6776        TCGA-44-6777 
  "ZNF804A MUTATED" "ZNF804A WILD-TYPE" "ZNF804A WILD-TYPE"   "ZNF804A MUTATED" 
       TCGA-44-6778        TCGA-44-6779        TCGA-49-4486        TCGA-49-4487 
  "ZNF804A MUTATED" "ZNF804A WILD-TYPE" "ZNF804A WILD-TYPE" "ZNF804A WILD-TYPE" 
       TCGA-49-4488        TCGA-49-4490        TCGA-49-4494        TCGA-49-4501 
"ZNF804A WILD-TYPE" "ZNF804A WILD-TYPE" "ZNF804A WILD-TYPE" "ZNF804A WILD-TYPE" 
       TCGA-49-4505        TCGA-49-4506        TCGA-49-4507        TCGA-49-4510 
"ZNF804A WILD-TYPE"   "ZNF804A MUTATED" "ZNF804A WILD-TYPE" "ZNF804A WILD-TYPE" 
       TCGA-49-4512        TCGA-49-4514        TCGA-49-6742        TCGA-49-6743 
"ZNF804A WILD-TYPE" "ZNF804A WILD-TYPE"   "ZNF804A MUTATED" "ZNF804A WILD-TYPE" 
       TCGA-49-6744        TCGA-49-6745        TCGA-50-5044        TCGA-50-5045 
"ZNF804A WILD-TYPE" "ZNF804A WILD-TYPE" "ZNF804A WILD-TYPE" "ZNF804A WILD-TYPE" 
       TCGA-50-5049        TCGA-50-5051        TCGA-50-5055        TCGA-50-5066 
  "ZNF804A MUTATED" "ZNF804A WILD-TYPE" "ZNF804A WILD-TYPE" "ZNF804A WILD-TYPE" 
       TCGA-50-5068        TCGA-50-5072        TCGA-50-5930        TCGA-50-5931 
"ZNF804A WILD-TYPE" "ZNF804A WILD-TYPE" "ZNF804A WILD-TYPE" "ZNF804A WILD-TYPE" 
       TCGA-50-5932        TCGA-50-5933        TCGA-50-5935        TCGA-50-5936 
"ZNF804A WILD-TYPE" "ZNF804A WILD-TYPE" "ZNF804A WILD-TYPE" "ZNF804A WILD-TYPE" 
       TCGA-50-5939        TCGA-50-5941        TCGA-50-5942        TCGA-50-5944 
"ZNF804A WILD-TYPE" "ZNF804A WILD-TYPE"   "ZNF804A MUTATED" "ZNF804A WILD-TYPE" 
       TCGA-50-5946        TCGA-50-6590        TCGA-50-6591        TCGA-50-6592 
"ZNF804A WILD-TYPE" "ZNF804A WILD-TYPE" "ZNF804A WILD-TYPE" "ZNF804A WILD-TYPE" 
       TCGA-50-6593        TCGA-50-6594        TCGA-50-6595        TCGA-50-6597 
"ZNF804A WILD-TYPE"   "ZNF804A MUTATED" "ZNF804A WILD-TYPE" "ZNF804A WILD-TYPE" 
       TCGA-55-1592        TCGA-55-1594        TCGA-55-1595        TCGA-55-1596 
"ZNF804A WILD-TYPE" "ZNF804A WILD-TYPE" "ZNF804A WILD-TYPE" "ZNF804A WILD-TYPE" 
       TCGA-55-5899        TCGA-55-6543        TCGA-55-6642        TCGA-55-6712 
"ZNF804A WILD-TYPE" "ZNF804A WILD-TYPE" "ZNF804A WILD-TYPE" "ZNF804A WILD-TYPE" 
       TCGA-64-1676        TCGA-64-1677        TCGA-64-1678        TCGA-64-1680 
  "ZNF804A MUTATED" "ZNF804A WILD-TYPE" "ZNF804A WILD-TYPE" "ZNF804A WILD-TYPE" 
       TCGA-64-5774        TCGA-64-5775        TCGA-64-5778        TCGA-64-5779 
"ZNF804A WILD-TYPE" "ZNF804A WILD-TYPE"   "ZNF804A MUTATED" "ZNF804A WILD-TYPE" 
       TCGA-64-5781        TCGA-64-5815        TCGA-67-3770        TCGA-67-3771 
  "ZNF804A MUTATED" "ZNF804A WILD-TYPE" "ZNF804A WILD-TYPE"   "ZNF804A MUTATED" 
       TCGA-67-3772        TCGA-67-3773        TCGA-67-3774        TCGA-67-6215 
"ZNF804A WILD-TYPE" "ZNF804A WILD-TYPE" "ZNF804A WILD-TYPE" "ZNF804A WILD-TYPE" 
       TCGA-67-6216        TCGA-67-6217        TCGA-71-6725        TCGA-73-4658 
"ZNF804A WILD-TYPE" "ZNF804A WILD-TYPE" "ZNF804A WILD-TYPE" "ZNF804A WILD-TYPE" 
       TCGA-73-4659        TCGA-73-4662        TCGA-73-4666        TCGA-73-4668 
"ZNF804A WILD-TYPE"   "ZNF804A MUTATED" "ZNF804A WILD-TYPE"   "ZNF804A MUTATED" 
       TCGA-73-4670        TCGA-73-4675        TCGA-73-4676        TCGA-73-4677 
"ZNF804A WILD-TYPE" "ZNF804A WILD-TYPE" "ZNF804A WILD-TYPE" "ZNF804A WILD-TYPE" 
       TCGA-91-6828        TCGA-91-6829        TCGA-91-6831        TCGA-91-6835 
"ZNF804A WILD-TYPE" "ZNF804A WILD-TYPE" "ZNF804A WILD-TYPE" "ZNF804A WILD-TYPE" 
       TCGA-91-6836 
  "ZNF804A MUTATED" 
       TCGA-05-4249        TCGA-05-4250        TCGA-05-4382        TCGA-05-4384 
"ZNF804A WILD-TYPE" "ZNF804A WILD-TYPE"   "ZNF804A MUTATED"   "ZNF804A MUTATED" 
       TCGA-05-4390        TCGA-05-4396        TCGA-05-4397        TCGA-05-4398 
"ZNF804A WILD-TYPE"   "ZNF804A MUTATED"   "ZNF804A MUTATED" "ZNF804A WILD-TYPE" 
       TCGA-05-4402        TCGA-05-4405        TCGA-05-4415        TCGA-05-4417 
"ZNF804A WILD-TYPE" "ZNF804A WILD-TYPE" "ZNF804A WILD-TYPE" "ZNF804A WILD-TYPE" 
       TCGA-05-4418        TCGA-05-4420        TCGA-05-4424        TCGA-05-4426 
"ZNF804A WILD-TYPE" "ZNF804A WILD-TYPE"   "ZNF804A MUTATED" "ZNF804A WILD-TYPE" 
       TCGA-05-4427        TCGA-05-4430        TCGA-05-4432        TCGA-05-4433 
  "ZNF804A MUTATED" "ZNF804A WILD-TYPE"   "ZNF804A MUTATED" "ZNF804A WILD-TYPE" 
       TCGA-05-4434        TCGA-05-5420        TCGA-05-5423        TCGA-05-5425 
"ZNF804A WILD-TYPE" "ZNF804A WILD-TYPE" "ZNF804A WILD-TYPE" "ZNF804A WILD-TYPE" 
       TCGA-05-5429        TCGA-05-5715        TCGA-35-3615        TCGA-35-4122 
"ZNF804A WILD-TYPE" "ZNF804A WILD-TYPE" "ZNF804A WILD-TYPE" "ZNF804A WILD-TYPE" 
       TCGA-35-4123        TCGA-35-5375        TCGA-38-4625        TCGA-38-4626 
  "ZNF804A MUTATED" "ZNF804A WILD-TYPE"   "ZNF804A MUTATED"   "ZNF804A MUTATED" 
       TCGA-38-4627        TCGA-38-4628        TCGA-38-4629        TCGA-38-4630 
"ZNF804A WILD-TYPE" "ZNF804A WILD-TYPE" "ZNF804A WILD-TYPE" "ZNF804A WILD-TYPE" 
       TCGA-38-4631        TCGA-38-4632        TCGA-38-6178        TCGA-44-2655 
"ZNF804A WILD-TYPE" "ZNF804A WILD-TYPE" "ZNF804A WILD-TYPE" "ZNF804A WILD-TYPE" 
       TCGA-44-2656        TCGA-44-2657        TCGA-44-2659        TCGA-44-2661 
"ZNF804A WILD-TYPE" "ZNF804A WILD-TYPE" "ZNF804A WILD-TYPE" "ZNF804A WILD-TYPE" 
       TCGA-44-2662        TCGA-44-2665        TCGA-44-2666        TCGA-44-2668 
"ZNF804A WILD-TYPE" "ZNF804A WILD-TYPE" "ZNF804A WILD-TYPE" "ZNF804A WILD-TYPE" 
       TCGA-44-3396        TCGA-44-3398        TCGA-44-3918        TCGA-44-3919 
"ZNF804A WILD-TYPE"   "ZNF804A MUTATED"   "ZNF804A MUTATED" "ZNF804A WILD-TYPE" 
       TCGA-44-4112        TCGA-44-5643        TCGA-44-5645        TCGA-44-6144 
"ZNF804A WILD-TYPE" "ZNF804A WILD-TYPE" "ZNF804A WILD-TYPE" "ZNF804A WILD-TYPE" 
       TCGA-44-6145        TCGA-44-6146        TCGA-44-6147        TCGA-44-6148 
"ZNF804A WILD-TYPE" "ZNF804A WILD-TYPE" "ZNF804A WILD-TYPE" "ZNF804A WILD-TYPE" 
       TCGA-44-6774        TCGA-44-6775        TCGA-44-6776        TCGA-44-6777 
  "ZNF804A MUTATED" "ZNF804A WILD-TYPE" "ZNF804A WILD-TYPE"   "ZNF804A MUTATED" 
       TCGA-44-6778        TCGA-44-6779        TCGA-49-4486        TCGA-49-4487 
  "ZNF804A MUTATED" "ZNF804A WILD-TYPE" "ZNF804A WILD-TYPE" "ZNF804A WILD-TYPE" 
       TCGA-49-4488        TCGA-49-4490        TCGA-49-4494        TCGA-49-4501 
"ZNF804A WILD-TYPE" "ZNF804A WILD-TYPE" "ZNF804A WILD-TYPE" "ZNF804A WILD-TYPE" 
       TCGA-49-4505        TCGA-49-4506        TCGA-49-4507        TCGA-49-4510 
"ZNF804A WILD-TYPE"   "ZNF804A MUTATED" "ZNF804A WILD-TYPE" "ZNF804A WILD-TYPE" 
       TCGA-49-4512        TCGA-49-4514        TCGA-49-6742        TCGA-49-6743 
"ZNF804A WILD-TYPE" "ZNF804A WILD-TYPE"   "ZNF804A MUTATED" "ZNF804A WILD-TYPE" 
       TCGA-49-6744        TCGA-49-6745        TCGA-50-5044        TCGA-50-5045 
"ZNF804A WILD-TYPE" "ZNF804A WILD-TYPE" "ZNF804A WILD-TYPE" "ZNF804A WILD-TYPE" 
       TCGA-50-5049        TCGA-50-5051        TCGA-50-5055        TCGA-50-5066 
  "ZNF804A MUTATED" "ZNF804A WILD-TYPE" "ZNF804A WILD-TYPE" "ZNF804A WILD-TYPE" 
       TCGA-50-5068        TCGA-50-5072        TCGA-50-5930        TCGA-50-5931 
"ZNF804A WILD-TYPE" "ZNF804A WILD-TYPE" "ZNF804A WILD-TYPE" "ZNF804A WILD-TYPE" 
       TCGA-50-5932        TCGA-50-5933        TCGA-50-5935        TCGA-50-5936 
"ZNF804A WILD-TYPE" "ZNF804A WILD-TYPE" "ZNF804A WILD-TYPE" "ZNF804A WILD-TYPE" 
       TCGA-50-5939        TCGA-50-5941        TCGA-50-5942        TCGA-50-5944 
"ZNF804A WILD-TYPE" "ZNF804A WILD-TYPE"   "ZNF804A MUTATED" "ZNF804A WILD-TYPE" 
       TCGA-50-5946        TCGA-50-6590        TCGA-50-6591        TCGA-50-6592 
"ZNF804A WILD-TYPE" "ZNF804A WILD-TYPE" "ZNF804A WILD-TYPE" "ZNF804A WILD-TYPE" 
       TCGA-50-6593        TCGA-50-6594        TCGA-50-6595        TCGA-50-6597 
"ZNF804A WILD-TYPE"   "ZNF804A MUTATED" "ZNF804A WILD-TYPE" "ZNF804A WILD-TYPE" 
       TCGA-55-1592        TCGA-55-1594        TCGA-55-1595        TCGA-55-1596 
"ZNF804A WILD-TYPE" "ZNF804A WILD-TYPE" "ZNF804A WILD-TYPE" "ZNF804A WILD-TYPE" 
       TCGA-55-5899        TCGA-55-6543        TCGA-55-6642        TCGA-55-6712 
"ZNF804A WILD-TYPE" "ZNF804A WILD-TYPE" "ZNF804A WILD-TYPE" "ZNF804A WILD-TYPE" 
       TCGA-64-1676        TCGA-64-1677        TCGA-64-1678        TCGA-64-1680 
  "ZNF804A MUTATED" "ZNF804A WILD-TYPE" "ZNF804A WILD-TYPE" "ZNF804A WILD-TYPE" 
       TCGA-64-5774        TCGA-64-5775        TCGA-64-5778        TCGA-64-5779 
"ZNF804A WILD-TYPE" "ZNF804A WILD-TYPE"   "ZNF804A MUTATED" "ZNF804A WILD-TYPE" 
       TCGA-64-5781        TCGA-64-5815        TCGA-67-3770        TCGA-67-3771 
  "ZNF804A MUTATED" "ZNF804A WILD-TYPE" "ZNF804A WILD-TYPE"   "ZNF804A MUTATED" 
       TCGA-67-3772        TCGA-67-3773        TCGA-67-3774        TCGA-67-6215 
"ZNF804A WILD-TYPE" "ZNF804A WILD-TYPE" "ZNF804A WILD-TYPE" "ZNF804A WILD-TYPE" 
       TCGA-67-6216        TCGA-67-6217        TCGA-71-6725        TCGA-73-4658 
"ZNF804A WILD-TYPE" "ZNF804A WILD-TYPE" "ZNF804A WILD-TYPE" "ZNF804A WILD-TYPE" 
       TCGA-73-4659        TCGA-73-4662        TCGA-73-4666        TCGA-73-4668 
"ZNF804A WILD-TYPE"   "ZNF804A MUTATED" "ZNF804A WILD-TYPE"   "ZNF804A MUTATED" 
       TCGA-73-4670        TCGA-73-4675        TCGA-73-4676        TCGA-73-4677 
"ZNF804A WILD-TYPE" "ZNF804A WILD-TYPE" "ZNF804A WILD-TYPE" "ZNF804A WILD-TYPE" 
       TCGA-91-6828        TCGA-91-6829        TCGA-91-6831        TCGA-91-6835 
"ZNF804A WILD-TYPE" "ZNF804A WILD-TYPE" "ZNF804A WILD-TYPE" "ZNF804A WILD-TYPE" 
       TCGA-91-6836 
  "ZNF804A MUTATED" 
[1] "hr=" "2.7"
D27V2, continuous
D27V3, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  ZNF804A MUTATED     17   13
  ZNF804A WILD-TYPE   76   66
        clus
vv       ZNF804A MUTATED ZNF804A WILD-TYPE
  FEMALE              17                76
  MALE                13                66
D27V4, continuous
D27V5, multiclass
D27V6, multiclass
    clus
vv   ZNF804A MUTATED ZNF804A WILD-TYPE
  T1              10                31
  T2              15                93
  T3               4                10
  T4               1                 7
D27V7, multiclass
       clus
vv      ZNF804A MUTATED ZNF804A WILD-TYPE
  N0                 17                78
  N1                  8                29
  N2+N3               4                31
D27V8, multiclass
    clus
vv   ZNF804A MUTATED ZNF804A WILD-TYPE
  M0              25               112
  M1               0                 9
  MX               5                17
D27V9, multiclass
     clus
vv    ZNF804A MUTATED ZNF804A WILD-TYPE
  I                14                74
  II               10                23
  III               5                34
  IV                0                 9
D27V10, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  ZNF804A MUTATED      4   26
  ZNF804A WILD-TYPE   12  130
     clus
vv    ZNF804A MUTATED ZNF804A WILD-TYPE
  NO                4                12
  YES              26               130
D27V11, continuous
D27V12, continuous
D27V13, multiclass
                                             clus
vv                                            ZNF804A MUTATED ZNF804A WILD-TYPE
  CURRENT REFORMED SMOKER FOR < OR = 15 YEARS              14                48
  CURRENT REFORMED SMOKER FOR > 15 YEARS                    6                40
  CURRENT SMOKER                                            9                19
  LIFELONG NON-SMOKER                                       0                24
D27V14, continuous

Clustering(28) Variable = C18ORF34 MUTATION ANALYSIS
D28V1, survival
                    sevent
clus2                 0  1
  C18ORF34 MUTATED   10  5
  C18ORF34 WILD-TYPE 89 45
  C18ORF34 MUTATED C18ORF34 WILD-TYPE 
                15                134 
  C18ORF34 MUTATED C18ORF34 WILD-TYPE 
                 5                 45 
$`C18ORF34 MUTATED`
TCGA-05-4250 TCGA-05-4382 TCGA-05-4396 TCGA-35-5375 TCGA-38-4628 TCGA-44-2668 
        3.98        19.92         9.96         8.68        49.02         8.09 
TCGA-50-6592 TCGA-55-1595 TCGA-55-1596 TCGA-55-5899 TCGA-64-5775 TCGA-64-5778 
       25.51        48.62        45.17         2.86         0.10        30.44 
TCGA-73-4662 TCGA-73-4666 TCGA-91-6836 
       29.95        20.28         0.36 

$`C18ORF34 WILD-TYPE`
TCGA-05-4249 TCGA-05-4384 TCGA-05-4390 TCGA-05-4397 TCGA-05-4398 TCGA-05-4402 
       38.07        14.01        37.02        24.03        47.05         8.02 
TCGA-05-4405 TCGA-05-4415 TCGA-05-4417 TCGA-05-4418 TCGA-05-4420 TCGA-05-4424 
       20.05         2.96        14.93         8.98        29.95        30.02 
TCGA-05-4426 TCGA-05-4427 TCGA-05-4430 TCGA-05-4432 TCGA-05-4433 TCGA-05-4434 
       26.01        26.01        25.02        25.02        24.00        15.02 
TCGA-05-5420 TCGA-05-5423 TCGA-05-5425 TCGA-05-5429 TCGA-05-5715 TCGA-35-3615 
        1.02         4.96         2.96         0.99         2.04         0.46 
TCGA-35-4122 TCGA-35-4123 TCGA-38-4625 TCGA-38-4626 TCGA-38-4627 TCGA-38-4629 
        7.36         5.95        47.61        85.32        37.71        28.37 
TCGA-38-4630 TCGA-38-4631 TCGA-38-4632 TCGA-38-6178 TCGA-44-2655 TCGA-44-2656 
       35.28        11.64        44.61         5.19        18.87        19.10 
TCGA-44-2657 TCGA-44-2659 TCGA-44-2661 TCGA-44-2662 TCGA-44-2665 TCGA-44-2666 
       13.15        17.39         3.39        15.78        13.15         3.19 
TCGA-44-3396 TCGA-44-3398 TCGA-44-3918 TCGA-44-3919 TCGA-44-4112 TCGA-44-5643 
       10.22         8.32         6.44         6.21         4.60         3.48 
TCGA-44-5645 TCGA-44-6144 TCGA-44-6145 TCGA-44-6146 TCGA-44-6147 TCGA-44-6148 
        6.84         0.30         3.35         9.93         7.76         3.12 
TCGA-44-6774 TCGA-44-6775 TCGA-44-6776 TCGA-44-6777 TCGA-44-6778 TCGA-44-6779 
        5.42         2.70        63.72        32.45        36.49        16.41 
TCGA-49-4486 TCGA-49-4487 TCGA-49-4488 TCGA-49-4490 TCGA-49-4494 TCGA-49-4501 
       76.21        28.11        28.57        12.66        35.54        46.72 
TCGA-49-4505 TCGA-49-4506 TCGA-49-4507 TCGA-49-4510 TCGA-49-4512 TCGA-49-4514 
       14.07        32.84         8.81        29.46        29.75        43.20 
TCGA-49-6742 TCGA-49-6743 TCGA-49-6744 TCGA-49-6745 TCGA-50-5044 TCGA-50-5045 
       15.02        12.13        12.99         4.93        20.48        71.47 
TCGA-50-5049 TCGA-50-5051 TCGA-50-5055 TCGA-50-5066 TCGA-50-5068 TCGA-50-5072 
       48.82        14.96        25.81         9.76        49.28         8.05 
TCGA-50-5930 TCGA-50-5931 TCGA-50-5932 TCGA-50-5933 TCGA-50-5935 TCGA-50-5936 
        9.27         8.78        35.87        77.88        21.47         8.45 
TCGA-50-5939 TCGA-50-5941 TCGA-50-5942 TCGA-50-5944 TCGA-50-5946 TCGA-50-6590 
       15.12         9.37         4.44        12.26        11.47        42.31 
TCGA-50-6591 TCGA-50-6593 TCGA-50-6594 TCGA-50-6595 TCGA-50-6597 TCGA-55-1592 
        3.88        11.05        12.16         6.21        33.37        23.05 
TCGA-55-1594 TCGA-55-6543 TCGA-55-6642 TCGA-55-6712 TCGA-64-1676 TCGA-64-1677 
       38.73         0.07        32.61         0.79        56.81        20.65 
TCGA-64-1678 TCGA-64-1680 TCGA-64-5774 TCGA-64-5779 TCGA-64-5781 TCGA-64-5815 
       39.09        37.02        83.84        16.67        39.52         7.33 
TCGA-67-3770 TCGA-67-3771 TCGA-67-3772 TCGA-67-3773 TCGA-67-3774 TCGA-67-6215 
        0.99         1.97         0.59         2.04         0.59         0.89 
TCGA-67-6216 TCGA-67-6217 TCGA-71-6725 TCGA-73-4658 TCGA-73-4659 TCGA-73-4668 
        0.69        13.87         2.01        52.57        23.38        15.35 
TCGA-73-4670 TCGA-73-4675 TCGA-73-4676 TCGA-73-4677 TCGA-91-6828 TCGA-91-6829 
        0.46         1.32         4.01         1.25         1.22        41.33 
TCGA-91-6831 TCGA-91-6835 
        1.28         1.15 

  C18ORF34 MUTATED C18ORF34 WILD-TYPE 
              0.10               0.07 
  C18ORF34 MUTATED C18ORF34 WILD-TYPE 
             49.02              85.32 
  C18ORF34 MUTATED C18ORF34 WILD-TYPE 
             19.92              13.51 
[1] "0.1 - 49.0 (19.9)" "0.1 - 85.3 (13.5)"
        TCGA-05-4249         TCGA-05-4250         TCGA-05-4382 
"C18ORF34 WILD-TYPE"   "C18ORF34 MUTATED"   "C18ORF34 MUTATED" 
        TCGA-05-4384         TCGA-05-4390         TCGA-05-4396 
"C18ORF34 WILD-TYPE" "C18ORF34 WILD-TYPE"   "C18ORF34 MUTATED" 
        TCGA-05-4397         TCGA-05-4398         TCGA-05-4402 
"C18ORF34 WILD-TYPE" "C18ORF34 WILD-TYPE" "C18ORF34 WILD-TYPE" 
        TCGA-05-4405         TCGA-05-4415         TCGA-05-4417 
"C18ORF34 WILD-TYPE" "C18ORF34 WILD-TYPE" "C18ORF34 WILD-TYPE" 
        TCGA-05-4418         TCGA-05-4420         TCGA-05-4424 
"C18ORF34 WILD-TYPE" "C18ORF34 WILD-TYPE" "C18ORF34 WILD-TYPE" 
        TCGA-05-4426         TCGA-05-4427         TCGA-05-4430 
"C18ORF34 WILD-TYPE" "C18ORF34 WILD-TYPE" "C18ORF34 WILD-TYPE" 
        TCGA-05-4432         TCGA-05-4433         TCGA-05-4434 
"C18ORF34 WILD-TYPE" "C18ORF34 WILD-TYPE" "C18ORF34 WILD-TYPE" 
        TCGA-05-5420         TCGA-05-5423         TCGA-05-5425 
"C18ORF34 WILD-TYPE" "C18ORF34 WILD-TYPE" "C18ORF34 WILD-TYPE" 
        TCGA-05-5429         TCGA-05-5715         TCGA-35-3615 
"C18ORF34 WILD-TYPE" "C18ORF34 WILD-TYPE" "C18ORF34 WILD-TYPE" 
        TCGA-35-4122         TCGA-35-4123         TCGA-35-5375 
"C18ORF34 WILD-TYPE" "C18ORF34 WILD-TYPE"   "C18ORF34 MUTATED" 
        TCGA-38-4625         TCGA-38-4626         TCGA-38-4627 
"C18ORF34 WILD-TYPE" "C18ORF34 WILD-TYPE" "C18ORF34 WILD-TYPE" 
        TCGA-38-4628         TCGA-38-4629         TCGA-38-4630 
  "C18ORF34 MUTATED" "C18ORF34 WILD-TYPE" "C18ORF34 WILD-TYPE" 
        TCGA-38-4631         TCGA-38-4632         TCGA-38-6178 
"C18ORF34 WILD-TYPE" "C18ORF34 WILD-TYPE" "C18ORF34 WILD-TYPE" 
        TCGA-44-2655         TCGA-44-2656         TCGA-44-2657 
"C18ORF34 WILD-TYPE" "C18ORF34 WILD-TYPE" "C18ORF34 WILD-TYPE" 
        TCGA-44-2659         TCGA-44-2661         TCGA-44-2662 
"C18ORF34 WILD-TYPE" "C18ORF34 WILD-TYPE" "C18ORF34 WILD-TYPE" 
        TCGA-44-2665         TCGA-44-2666         TCGA-44-2668 
"C18ORF34 WILD-TYPE" "C18ORF34 WILD-TYPE"   "C18ORF34 MUTATED" 
        TCGA-44-3396         TCGA-44-3398         TCGA-44-3918 
"C18ORF34 WILD-TYPE" "C18ORF34 WILD-TYPE" "C18ORF34 WILD-TYPE" 
        TCGA-44-3919         TCGA-44-4112         TCGA-44-5643 
"C18ORF34 WILD-TYPE" "C18ORF34 WILD-TYPE" "C18ORF34 WILD-TYPE" 
        TCGA-44-5645         TCGA-44-6144         TCGA-44-6145 
"C18ORF34 WILD-TYPE" "C18ORF34 WILD-TYPE" "C18ORF34 WILD-TYPE" 
        TCGA-44-6146         TCGA-44-6147         TCGA-44-6148 
"C18ORF34 WILD-TYPE" "C18ORF34 WILD-TYPE" "C18ORF34 WILD-TYPE" 
        TCGA-44-6774         TCGA-44-6775         TCGA-44-6776 
"C18ORF34 WILD-TYPE" "C18ORF34 WILD-TYPE" "C18ORF34 WILD-TYPE" 
        TCGA-44-6777         TCGA-44-6778         TCGA-44-6779 
"C18ORF34 WILD-TYPE" "C18ORF34 WILD-TYPE" "C18ORF34 WILD-TYPE" 
        TCGA-49-4486         TCGA-49-4487         TCGA-49-4488 
"C18ORF34 WILD-TYPE" "C18ORF34 WILD-TYPE" "C18ORF34 WILD-TYPE" 
        TCGA-49-4490         TCGA-49-4494         TCGA-49-4501 
"C18ORF34 WILD-TYPE" "C18ORF34 WILD-TYPE" "C18ORF34 WILD-TYPE" 
        TCGA-49-4505         TCGA-49-4506         TCGA-49-4507 
"C18ORF34 WILD-TYPE" "C18ORF34 WILD-TYPE" "C18ORF34 WILD-TYPE" 
        TCGA-49-4510         TCGA-49-4512         TCGA-49-4514 
"C18ORF34 WILD-TYPE" "C18ORF34 WILD-TYPE" "C18ORF34 WILD-TYPE" 
        TCGA-49-6742         TCGA-49-6743         TCGA-49-6744 
"C18ORF34 WILD-TYPE" "C18ORF34 WILD-TYPE" "C18ORF34 WILD-TYPE" 
        TCGA-49-6745         TCGA-50-5044         TCGA-50-5045 
"C18ORF34 WILD-TYPE" "C18ORF34 WILD-TYPE" "C18ORF34 WILD-TYPE" 
        TCGA-50-5049         TCGA-50-5051         TCGA-50-5055 
"C18ORF34 WILD-TYPE" "C18ORF34 WILD-TYPE" "C18ORF34 WILD-TYPE" 
        TCGA-50-5066         TCGA-50-5068         TCGA-50-5072 
"C18ORF34 WILD-TYPE" "C18ORF34 WILD-TYPE" "C18ORF34 WILD-TYPE" 
        TCGA-50-5930         TCGA-50-5931         TCGA-50-5932 
"C18ORF34 WILD-TYPE" "C18ORF34 WILD-TYPE" "C18ORF34 WILD-TYPE" 
        TCGA-50-5933         TCGA-50-5935         TCGA-50-5936 
"C18ORF34 WILD-TYPE" "C18ORF34 WILD-TYPE" "C18ORF34 WILD-TYPE" 
        TCGA-50-5939         TCGA-50-5941         TCGA-50-5942 
"C18ORF34 WILD-TYPE" "C18ORF34 WILD-TYPE" "C18ORF34 WILD-TYPE" 
        TCGA-50-5944         TCGA-50-5946         TCGA-50-6590 
"C18ORF34 WILD-TYPE" "C18ORF34 WILD-TYPE" "C18ORF34 WILD-TYPE" 
        TCGA-50-6591         TCGA-50-6592         TCGA-50-6593 
"C18ORF34 WILD-TYPE"   "C18ORF34 MUTATED" "C18ORF34 WILD-TYPE" 
        TCGA-50-6594         TCGA-50-6595         TCGA-50-6597 
"C18ORF34 WILD-TYPE" "C18ORF34 WILD-TYPE" "C18ORF34 WILD-TYPE" 
        TCGA-55-1592         TCGA-55-1594         TCGA-55-1595 
"C18ORF34 WILD-TYPE" "C18ORF34 WILD-TYPE"   "C18ORF34 MUTATED" 
        TCGA-55-1596         TCGA-55-5899         TCGA-55-6543 
  "C18ORF34 MUTATED"   "C18ORF34 MUTATED" "C18ORF34 WILD-TYPE" 
        TCGA-55-6642         TCGA-55-6712         TCGA-64-1676 
"C18ORF34 WILD-TYPE" "C18ORF34 WILD-TYPE" "C18ORF34 WILD-TYPE" 
        TCGA-64-1677         TCGA-64-1678         TCGA-64-1680 
"C18ORF34 WILD-TYPE" "C18ORF34 WILD-TYPE" "C18ORF34 WILD-TYPE" 
        TCGA-64-5774         TCGA-64-5775         TCGA-64-5778 
"C18ORF34 WILD-TYPE"   "C18ORF34 MUTATED"   "C18ORF34 MUTATED" 
        TCGA-64-5779         TCGA-64-5781         TCGA-64-5815 
"C18ORF34 WILD-TYPE" "C18ORF34 WILD-TYPE" "C18ORF34 WILD-TYPE" 
        TCGA-67-3770         TCGA-67-3771         TCGA-67-3772 
"C18ORF34 WILD-TYPE" "C18ORF34 WILD-TYPE" "C18ORF34 WILD-TYPE" 
        TCGA-67-3773         TCGA-67-3774         TCGA-67-6215 
"C18ORF34 WILD-TYPE" "C18ORF34 WILD-TYPE" "C18ORF34 WILD-TYPE" 
        TCGA-67-6216         TCGA-67-6217         TCGA-71-6725 
"C18ORF34 WILD-TYPE" "C18ORF34 WILD-TYPE" "C18ORF34 WILD-TYPE" 
        TCGA-73-4658         TCGA-73-4659         TCGA-73-4662 
"C18ORF34 WILD-TYPE" "C18ORF34 WILD-TYPE"   "C18ORF34 MUTATED" 
        TCGA-73-4666         TCGA-73-4668         TCGA-73-4670 
  "C18ORF34 MUTATED" "C18ORF34 WILD-TYPE" "C18ORF34 WILD-TYPE" 
        TCGA-73-4675         TCGA-73-4676         TCGA-73-4677 
"C18ORF34 WILD-TYPE" "C18ORF34 WILD-TYPE" "C18ORF34 WILD-TYPE" 
        TCGA-91-6828         TCGA-91-6829         TCGA-91-6831 
"C18ORF34 WILD-TYPE" "C18ORF34 WILD-TYPE" "C18ORF34 WILD-TYPE" 
        TCGA-91-6835         TCGA-91-6836 
"C18ORF34 WILD-TYPE"   "C18ORF34 MUTATED" 
        TCGA-05-4249         TCGA-05-4250         TCGA-05-4382 
"C18ORF34 WILD-TYPE"   "C18ORF34 MUTATED"   "C18ORF34 MUTATED" 
        TCGA-05-4384         TCGA-05-4390         TCGA-05-4396 
"C18ORF34 WILD-TYPE" "C18ORF34 WILD-TYPE"   "C18ORF34 MUTATED" 
        TCGA-05-4397         TCGA-05-4398         TCGA-05-4402 
"C18ORF34 WILD-TYPE" "C18ORF34 WILD-TYPE" "C18ORF34 WILD-TYPE" 
        TCGA-05-4405         TCGA-05-4415         TCGA-05-4417 
"C18ORF34 WILD-TYPE" "C18ORF34 WILD-TYPE" "C18ORF34 WILD-TYPE" 
        TCGA-05-4418         TCGA-05-4420         TCGA-05-4424 
"C18ORF34 WILD-TYPE" "C18ORF34 WILD-TYPE" "C18ORF34 WILD-TYPE" 
        TCGA-05-4426         TCGA-05-4427         TCGA-05-4430 
"C18ORF34 WILD-TYPE" "C18ORF34 WILD-TYPE" "C18ORF34 WILD-TYPE" 
        TCGA-05-4432         TCGA-05-4433         TCGA-05-4434 
"C18ORF34 WILD-TYPE" "C18ORF34 WILD-TYPE" "C18ORF34 WILD-TYPE" 
        TCGA-05-5420         TCGA-05-5423         TCGA-05-5425 
"C18ORF34 WILD-TYPE" "C18ORF34 WILD-TYPE" "C18ORF34 WILD-TYPE" 
        TCGA-05-5429         TCGA-05-5715         TCGA-35-3615 
"C18ORF34 WILD-TYPE" "C18ORF34 WILD-TYPE" "C18ORF34 WILD-TYPE" 
        TCGA-35-4122         TCGA-35-4123         TCGA-35-5375 
"C18ORF34 WILD-TYPE" "C18ORF34 WILD-TYPE"   "C18ORF34 MUTATED" 
        TCGA-38-4625         TCGA-38-4626         TCGA-38-4627 
"C18ORF34 WILD-TYPE" "C18ORF34 WILD-TYPE" "C18ORF34 WILD-TYPE" 
        TCGA-38-4628         TCGA-38-4629         TCGA-38-4630 
  "C18ORF34 MUTATED" "C18ORF34 WILD-TYPE" "C18ORF34 WILD-TYPE" 
        TCGA-38-4631         TCGA-38-4632         TCGA-38-6178 
"C18ORF34 WILD-TYPE" "C18ORF34 WILD-TYPE" "C18ORF34 WILD-TYPE" 
        TCGA-44-2655         TCGA-44-2656         TCGA-44-2657 
"C18ORF34 WILD-TYPE" "C18ORF34 WILD-TYPE" "C18ORF34 WILD-TYPE" 
        TCGA-44-2659         TCGA-44-2661         TCGA-44-2662 
"C18ORF34 WILD-TYPE" "C18ORF34 WILD-TYPE" "C18ORF34 WILD-TYPE" 
        TCGA-44-2665         TCGA-44-2666         TCGA-44-2668 
"C18ORF34 WILD-TYPE" "C18ORF34 WILD-TYPE"   "C18ORF34 MUTATED" 
        TCGA-44-3396         TCGA-44-3398         TCGA-44-3918 
"C18ORF34 WILD-TYPE" "C18ORF34 WILD-TYPE" "C18ORF34 WILD-TYPE" 
        TCGA-44-3919         TCGA-44-4112         TCGA-44-5643 
"C18ORF34 WILD-TYPE" "C18ORF34 WILD-TYPE" "C18ORF34 WILD-TYPE" 
        TCGA-44-5645         TCGA-44-6144         TCGA-44-6145 
"C18ORF34 WILD-TYPE" "C18ORF34 WILD-TYPE" "C18ORF34 WILD-TYPE" 
        TCGA-44-6146         TCGA-44-6147         TCGA-44-6148 
"C18ORF34 WILD-TYPE" "C18ORF34 WILD-TYPE" "C18ORF34 WILD-TYPE" 
        TCGA-44-6774         TCGA-44-6775         TCGA-44-6776 
"C18ORF34 WILD-TYPE" "C18ORF34 WILD-TYPE" "C18ORF34 WILD-TYPE" 
        TCGA-44-6777         TCGA-44-6778         TCGA-44-6779 
"C18ORF34 WILD-TYPE" "C18ORF34 WILD-TYPE" "C18ORF34 WILD-TYPE" 
        TCGA-49-4486         TCGA-49-4487         TCGA-49-4488 
"C18ORF34 WILD-TYPE" "C18ORF34 WILD-TYPE" "C18ORF34 WILD-TYPE" 
        TCGA-49-4490         TCGA-49-4494         TCGA-49-4501 
"C18ORF34 WILD-TYPE" "C18ORF34 WILD-TYPE" "C18ORF34 WILD-TYPE" 
        TCGA-49-4505         TCGA-49-4506         TCGA-49-4507 
"C18ORF34 WILD-TYPE" "C18ORF34 WILD-TYPE" "C18ORF34 WILD-TYPE" 
        TCGA-49-4510         TCGA-49-4512         TCGA-49-4514 
"C18ORF34 WILD-TYPE" "C18ORF34 WILD-TYPE" "C18ORF34 WILD-TYPE" 
        TCGA-49-6742         TCGA-49-6743         TCGA-49-6744 
"C18ORF34 WILD-TYPE" "C18ORF34 WILD-TYPE" "C18ORF34 WILD-TYPE" 
        TCGA-49-6745         TCGA-50-5044         TCGA-50-5045 
"C18ORF34 WILD-TYPE" "C18ORF34 WILD-TYPE" "C18ORF34 WILD-TYPE" 
        TCGA-50-5049         TCGA-50-5051         TCGA-50-5055 
"C18ORF34 WILD-TYPE" "C18ORF34 WILD-TYPE" "C18ORF34 WILD-TYPE" 
        TCGA-50-5066         TCGA-50-5068         TCGA-50-5072 
"C18ORF34 WILD-TYPE" "C18ORF34 WILD-TYPE" "C18ORF34 WILD-TYPE" 
        TCGA-50-5930         TCGA-50-5931         TCGA-50-5932 
"C18ORF34 WILD-TYPE" "C18ORF34 WILD-TYPE" "C18ORF34 WILD-TYPE" 
        TCGA-50-5933         TCGA-50-5935         TCGA-50-5936 
"C18ORF34 WILD-TYPE" "C18ORF34 WILD-TYPE" "C18ORF34 WILD-TYPE" 
        TCGA-50-5939         TCGA-50-5941         TCGA-50-5942 
"C18ORF34 WILD-TYPE" "C18ORF34 WILD-TYPE" "C18ORF34 WILD-TYPE" 
        TCGA-50-5944         TCGA-50-5946         TCGA-50-6590 
"C18ORF34 WILD-TYPE" "C18ORF34 WILD-TYPE" "C18ORF34 WILD-TYPE" 
        TCGA-50-6591         TCGA-50-6592         TCGA-50-6593 
"C18ORF34 WILD-TYPE"   "C18ORF34 MUTATED" "C18ORF34 WILD-TYPE" 
        TCGA-50-6594         TCGA-50-6595         TCGA-50-6597 
"C18ORF34 WILD-TYPE" "C18ORF34 WILD-TYPE" "C18ORF34 WILD-TYPE" 
        TCGA-55-1592         TCGA-55-1594         TCGA-55-1595 
"C18ORF34 WILD-TYPE" "C18ORF34 WILD-TYPE"   "C18ORF34 MUTATED" 
        TCGA-55-1596         TCGA-55-5899         TCGA-55-6543 
  "C18ORF34 MUTATED"   "C18ORF34 MUTATED" "C18ORF34 WILD-TYPE" 
        TCGA-55-6642         TCGA-55-6712         TCGA-64-1676 
"C18ORF34 WILD-TYPE" "C18ORF34 WILD-TYPE" "C18ORF34 WILD-TYPE" 
        TCGA-64-1677         TCGA-64-1678         TCGA-64-1680 
"C18ORF34 WILD-TYPE" "C18ORF34 WILD-TYPE" "C18ORF34 WILD-TYPE" 
        TCGA-64-5774         TCGA-64-5775         TCGA-64-5778 
"C18ORF34 WILD-TYPE"   "C18ORF34 MUTATED"   "C18ORF34 MUTATED" 
        TCGA-64-5779         TCGA-64-5781         TCGA-64-5815 
"C18ORF34 WILD-TYPE" "C18ORF34 WILD-TYPE" "C18ORF34 WILD-TYPE" 
        TCGA-67-3770         TCGA-67-3771         TCGA-67-3772 
"C18ORF34 WILD-TYPE" "C18ORF34 WILD-TYPE" "C18ORF34 WILD-TYPE" 
        TCGA-67-3773         TCGA-67-3774         TCGA-67-6215 
"C18ORF34 WILD-TYPE" "C18ORF34 WILD-TYPE" "C18ORF34 WILD-TYPE" 
        TCGA-67-6216         TCGA-67-6217         TCGA-71-6725 
"C18ORF34 WILD-TYPE" "C18ORF34 WILD-TYPE" "C18ORF34 WILD-TYPE" 
        TCGA-73-4658         TCGA-73-4659         TCGA-73-4662 
"C18ORF34 WILD-TYPE" "C18ORF34 WILD-TYPE"   "C18ORF34 MUTATED" 
        TCGA-73-4666         TCGA-73-4668         TCGA-73-4670 
  "C18ORF34 MUTATED" "C18ORF34 WILD-TYPE" "C18ORF34 WILD-TYPE" 
        TCGA-73-4675         TCGA-73-4676         TCGA-73-4677 
"C18ORF34 WILD-TYPE" "C18ORF34 WILD-TYPE" "C18ORF34 WILD-TYPE" 
        TCGA-91-6828         TCGA-91-6829         TCGA-91-6831 
"C18ORF34 WILD-TYPE" "C18ORF34 WILD-TYPE" "C18ORF34 WILD-TYPE" 
        TCGA-91-6835         TCGA-91-6836 
"C18ORF34 WILD-TYPE"   "C18ORF34 MUTATED" 
        TCGA-05-4249         TCGA-05-4250         TCGA-05-4382 
"C18ORF34 WILD-TYPE"   "C18ORF34 MUTATED"   "C18ORF34 MUTATED" 
        TCGA-05-4384         TCGA-05-4390         TCGA-05-4396 
"C18ORF34 WILD-TYPE" "C18ORF34 WILD-TYPE"   "C18ORF34 MUTATED" 
        TCGA-05-4397         TCGA-05-4398         TCGA-05-4402 
"C18ORF34 WILD-TYPE" "C18ORF34 WILD-TYPE" "C18ORF34 WILD-TYPE" 
        TCGA-05-4405         TCGA-05-4415         TCGA-05-4417 
"C18ORF34 WILD-TYPE" "C18ORF34 WILD-TYPE" "C18ORF34 WILD-TYPE" 
        TCGA-05-4418         TCGA-05-4420         TCGA-05-4424 
"C18ORF34 WILD-TYPE" "C18ORF34 WILD-TYPE" "C18ORF34 WILD-TYPE" 
        TCGA-05-4426         TCGA-05-4427         TCGA-05-4430 
"C18ORF34 WILD-TYPE" "C18ORF34 WILD-TYPE" "C18ORF34 WILD-TYPE" 
        TCGA-05-4432         TCGA-05-4433         TCGA-05-4434 
"C18ORF34 WILD-TYPE" "C18ORF34 WILD-TYPE" "C18ORF34 WILD-TYPE" 
        TCGA-05-5420         TCGA-05-5423         TCGA-05-5425 
"C18ORF34 WILD-TYPE" "C18ORF34 WILD-TYPE" "C18ORF34 WILD-TYPE" 
        TCGA-05-5429         TCGA-05-5715         TCGA-35-3615 
"C18ORF34 WILD-TYPE" "C18ORF34 WILD-TYPE" "C18ORF34 WILD-TYPE" 
        TCGA-35-4122         TCGA-35-4123         TCGA-35-5375 
"C18ORF34 WILD-TYPE" "C18ORF34 WILD-TYPE"   "C18ORF34 MUTATED" 
        TCGA-38-4625         TCGA-38-4626         TCGA-38-4627 
"C18ORF34 WILD-TYPE" "C18ORF34 WILD-TYPE" "C18ORF34 WILD-TYPE" 
        TCGA-38-4628         TCGA-38-4629         TCGA-38-4630 
  "C18ORF34 MUTATED" "C18ORF34 WILD-TYPE" "C18ORF34 WILD-TYPE" 
        TCGA-38-4631         TCGA-38-4632         TCGA-38-6178 
"C18ORF34 WILD-TYPE" "C18ORF34 WILD-TYPE" "C18ORF34 WILD-TYPE" 
        TCGA-44-2655         TCGA-44-2656         TCGA-44-2657 
"C18ORF34 WILD-TYPE" "C18ORF34 WILD-TYPE" "C18ORF34 WILD-TYPE" 
        TCGA-44-2659         TCGA-44-2661         TCGA-44-2662 
"C18ORF34 WILD-TYPE" "C18ORF34 WILD-TYPE" "C18ORF34 WILD-TYPE" 
        TCGA-44-2665         TCGA-44-2666         TCGA-44-2668 
"C18ORF34 WILD-TYPE" "C18ORF34 WILD-TYPE"   "C18ORF34 MUTATED" 
        TCGA-44-3396         TCGA-44-3398         TCGA-44-3918 
"C18ORF34 WILD-TYPE" "C18ORF34 WILD-TYPE" "C18ORF34 WILD-TYPE" 
        TCGA-44-3919         TCGA-44-4112         TCGA-44-5643 
"C18ORF34 WILD-TYPE" "C18ORF34 WILD-TYPE" "C18ORF34 WILD-TYPE" 
        TCGA-44-5645         TCGA-44-6144         TCGA-44-6145 
"C18ORF34 WILD-TYPE" "C18ORF34 WILD-TYPE" "C18ORF34 WILD-TYPE" 
        TCGA-44-6146         TCGA-44-6147         TCGA-44-6148 
"C18ORF34 WILD-TYPE" "C18ORF34 WILD-TYPE" "C18ORF34 WILD-TYPE" 
        TCGA-44-6774         TCGA-44-6775         TCGA-44-6776 
"C18ORF34 WILD-TYPE" "C18ORF34 WILD-TYPE" "C18ORF34 WILD-TYPE" 
        TCGA-44-6777         TCGA-44-6778         TCGA-44-6779 
"C18ORF34 WILD-TYPE" "C18ORF34 WILD-TYPE" "C18ORF34 WILD-TYPE" 
        TCGA-49-4486         TCGA-49-4487         TCGA-49-4488 
"C18ORF34 WILD-TYPE" "C18ORF34 WILD-TYPE" "C18ORF34 WILD-TYPE" 
        TCGA-49-4490         TCGA-49-4494         TCGA-49-4501 
"C18ORF34 WILD-TYPE" "C18ORF34 WILD-TYPE" "C18ORF34 WILD-TYPE" 
        TCGA-49-4505         TCGA-49-4506         TCGA-49-4507 
"C18ORF34 WILD-TYPE" "C18ORF34 WILD-TYPE" "C18ORF34 WILD-TYPE" 
        TCGA-49-4510         TCGA-49-4512         TCGA-49-4514 
"C18ORF34 WILD-TYPE" "C18ORF34 WILD-TYPE" "C18ORF34 WILD-TYPE" 
        TCGA-49-6742         TCGA-49-6743         TCGA-49-6744 
"C18ORF34 WILD-TYPE" "C18ORF34 WILD-TYPE" "C18ORF34 WILD-TYPE" 
        TCGA-49-6745         TCGA-50-5044         TCGA-50-5045 
"C18ORF34 WILD-TYPE" "C18ORF34 WILD-TYPE" "C18ORF34 WILD-TYPE" 
        TCGA-50-5049         TCGA-50-5051         TCGA-50-5055 
"C18ORF34 WILD-TYPE" "C18ORF34 WILD-TYPE" "C18ORF34 WILD-TYPE" 
        TCGA-50-5066         TCGA-50-5068         TCGA-50-5072 
"C18ORF34 WILD-TYPE" "C18ORF34 WILD-TYPE" "C18ORF34 WILD-TYPE" 
        TCGA-50-5930         TCGA-50-5931         TCGA-50-5932 
"C18ORF34 WILD-TYPE" "C18ORF34 WILD-TYPE" "C18ORF34 WILD-TYPE" 
        TCGA-50-5933         TCGA-50-5935         TCGA-50-5936 
"C18ORF34 WILD-TYPE" "C18ORF34 WILD-TYPE" "C18ORF34 WILD-TYPE" 
        TCGA-50-5939         TCGA-50-5941         TCGA-50-5942 
"C18ORF34 WILD-TYPE" "C18ORF34 WILD-TYPE" "C18ORF34 WILD-TYPE" 
        TCGA-50-5944         TCGA-50-5946         TCGA-50-6590 
"C18ORF34 WILD-TYPE" "C18ORF34 WILD-TYPE" "C18ORF34 WILD-TYPE" 
        TCGA-50-6591         TCGA-50-6592         TCGA-50-6593 
"C18ORF34 WILD-TYPE"   "C18ORF34 MUTATED" "C18ORF34 WILD-TYPE" 
        TCGA-50-6594         TCGA-50-6595         TCGA-50-6597 
"C18ORF34 WILD-TYPE" "C18ORF34 WILD-TYPE" "C18ORF34 WILD-TYPE" 
        TCGA-55-1592         TCGA-55-1594         TCGA-55-1595 
"C18ORF34 WILD-TYPE" "C18ORF34 WILD-TYPE"   "C18ORF34 MUTATED" 
        TCGA-55-1596         TCGA-55-5899         TCGA-55-6543 
  "C18ORF34 MUTATED"   "C18ORF34 MUTATED" "C18ORF34 WILD-TYPE" 
        TCGA-55-6642         TCGA-55-6712         TCGA-64-1676 
"C18ORF34 WILD-TYPE" "C18ORF34 WILD-TYPE" "C18ORF34 WILD-TYPE" 
        TCGA-64-1677         TCGA-64-1678         TCGA-64-1680 
"C18ORF34 WILD-TYPE" "C18ORF34 WILD-TYPE" "C18ORF34 WILD-TYPE" 
        TCGA-64-5774         TCGA-64-5775         TCGA-64-5778 
"C18ORF34 WILD-TYPE"   "C18ORF34 MUTATED"   "C18ORF34 MUTATED" 
        TCGA-64-5779         TCGA-64-5781         TCGA-64-5815 
"C18ORF34 WILD-TYPE" "C18ORF34 WILD-TYPE" "C18ORF34 WILD-TYPE" 
        TCGA-67-3770         TCGA-67-3771         TCGA-67-3772 
"C18ORF34 WILD-TYPE" "C18ORF34 WILD-TYPE" "C18ORF34 WILD-TYPE" 
        TCGA-67-3773         TCGA-67-3774         TCGA-67-6215 
"C18ORF34 WILD-TYPE" "C18ORF34 WILD-TYPE" "C18ORF34 WILD-TYPE" 
        TCGA-67-6216         TCGA-67-6217         TCGA-71-6725 
"C18ORF34 WILD-TYPE" "C18ORF34 WILD-TYPE" "C18ORF34 WILD-TYPE" 
        TCGA-73-4658         TCGA-73-4659         TCGA-73-4662 
"C18ORF34 WILD-TYPE" "C18ORF34 WILD-TYPE"   "C18ORF34 MUTATED" 
        TCGA-73-4666         TCGA-73-4668         TCGA-73-4670 
  "C18ORF34 MUTATED" "C18ORF34 WILD-TYPE" "C18ORF34 WILD-TYPE" 
        TCGA-73-4675         TCGA-73-4676         TCGA-73-4677 
"C18ORF34 WILD-TYPE" "C18ORF34 WILD-TYPE" "C18ORF34 WILD-TYPE" 
        TCGA-91-6828         TCGA-91-6829         TCGA-91-6831 
"C18ORF34 WILD-TYPE" "C18ORF34 WILD-TYPE" "C18ORF34 WILD-TYPE" 
        TCGA-91-6835         TCGA-91-6836 
"C18ORF34 WILD-TYPE"   "C18ORF34 MUTATED" 
[1] "hr=" "1"  
D28V2, continuous
D28V3, binary
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  C18ORF34 MUTATED      9   10
  C18ORF34 WILD-TYPE   84   69
        clus
vv       C18ORF34 MUTATED C18ORF34 WILD-TYPE
  FEMALE                9                 84
  MALE                 10                 69
D28V4, continuous
D28V5, multiclass
D28V6, multiclass
    clus
vv   C18ORF34 MUTATED C18ORF34 WILD-TYPE
  T1                5                 36
  T2               11                 97
  T3                1                 13
  T4                2                  6
D28V7, multiclass
       clus
vv      C18ORF34 MUTATED C18ORF34 WILD-TYPE
  N0                  12                 83
  N1                   6                 31
  N2+N3                1                 34
D28V8, multiclass
    clus
vv   C18ORF34 MUTATED C18ORF34 WILD-TYPE
  M0               16                121
  M1                2                  7
  MX                1                 21
D28V9, multiclass
     clus
vv    C18ORF34 MUTATED C18ORF34 WILD-TYPE
  I                 10                 78
  II                 3                 30
  III                4                 35
  IV                 2                  7
D28V10, binary
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  C18ORF34 MUTATED      2   17
  C18ORF34 WILD-TYPE   14  139
     clus
vv    C18ORF34 MUTATED C18ORF34 WILD-TYPE
  NO                 2                 14
  YES               17                139
D28V11, continuous
D28V12, continuous
D28V13, multiclass
                                             clus
vv                                            C18ORF34 MUTATED
  CURRENT REFORMED SMOKER FOR < OR = 15 YEARS                9
  CURRENT REFORMED SMOKER FOR > 15 YEARS                     4
  CURRENT SMOKER                                             5
  LIFELONG NON-SMOKER                                        1
                                             clus
vv                                            C18ORF34 WILD-TYPE
  CURRENT REFORMED SMOKER FOR < OR = 15 YEARS                 53
  CURRENT REFORMED SMOKER FOR > 15 YEARS                      42
  CURRENT SMOKER                                              23
  LIFELONG NON-SMOKER                                         23
D28V14, continuous

Clustering(29) Variable = SERPINB4 MUTATION ANALYSIS
D29V1, survival
                    sevent
clus2                 0  1
  SERPINB4 MUTATED    7  3
  SERPINB4 WILD-TYPE 92 47
  SERPINB4 MUTATED SERPINB4 WILD-TYPE 
                10                139 
  SERPINB4 MUTATED SERPINB4 WILD-TYPE 
                 3                 47 
$`SERPINB4 MUTATED`
TCGA-05-4417 TCGA-05-4424 TCGA-38-4626 TCGA-44-2668 TCGA-44-6776 TCGA-49-4486 
       14.93        30.02        85.32         8.09        63.72        76.21 
TCGA-49-4487 TCGA-50-5049 TCGA-73-4668 TCGA-73-4677 
       28.11        48.82        15.35         1.25 

$`SERPINB4 WILD-TYPE`
TCGA-05-4249 TCGA-05-4250 TCGA-05-4382 TCGA-05-4384 TCGA-05-4390 TCGA-05-4396 
       38.07         3.98        19.92        14.01        37.02         9.96 
TCGA-05-4397 TCGA-05-4398 TCGA-05-4402 TCGA-05-4405 TCGA-05-4415 TCGA-05-4418 
       24.03        47.05         8.02        20.05         2.96         8.98 
TCGA-05-4420 TCGA-05-4426 TCGA-05-4427 TCGA-05-4430 TCGA-05-4432 TCGA-05-4433 
       29.95        26.01        26.01        25.02        25.02        24.00 
TCGA-05-4434 TCGA-05-5420 TCGA-05-5423 TCGA-05-5425 TCGA-05-5429 TCGA-05-5715 
       15.02         1.02         4.96         2.96         0.99         2.04 
TCGA-35-3615 TCGA-35-4122 TCGA-35-4123 TCGA-35-5375 TCGA-38-4625 TCGA-38-4627 
        0.46         7.36         5.95         8.68        47.61        37.71 
TCGA-38-4628 TCGA-38-4629 TCGA-38-4630 TCGA-38-4631 TCGA-38-4632 TCGA-38-6178 
       49.02        28.37        35.28        11.64        44.61         5.19 
TCGA-44-2655 TCGA-44-2656 TCGA-44-2657 TCGA-44-2659 TCGA-44-2661 TCGA-44-2662 
       18.87        19.10        13.15        17.39         3.39        15.78 
TCGA-44-2665 TCGA-44-2666 TCGA-44-3396 TCGA-44-3398 TCGA-44-3918 TCGA-44-3919 
       13.15         3.19        10.22         8.32         6.44         6.21 
TCGA-44-4112 TCGA-44-5643 TCGA-44-5645 TCGA-44-6144 TCGA-44-6145 TCGA-44-6146 
        4.60         3.48         6.84         0.30         3.35         9.93 
TCGA-44-6147 TCGA-44-6148 TCGA-44-6774 TCGA-44-6775 TCGA-44-6777 TCGA-44-6778 
        7.76         3.12         5.42         2.70        32.45        36.49 
TCGA-44-6779 TCGA-49-4488 TCGA-49-4490 TCGA-49-4494 TCGA-49-4501 TCGA-49-4505 
       16.41        28.57        12.66        35.54        46.72        14.07 
TCGA-49-4506 TCGA-49-4507 TCGA-49-4510 TCGA-49-4512 TCGA-49-4514 TCGA-49-6742 
       32.84         8.81        29.46        29.75        43.20        15.02 
TCGA-49-6743 TCGA-49-6744 TCGA-49-6745 TCGA-50-5044 TCGA-50-5045 TCGA-50-5051 
       12.13        12.99         4.93        20.48        71.47        14.96 
TCGA-50-5055 TCGA-50-5066 TCGA-50-5068 TCGA-50-5072 TCGA-50-5930 TCGA-50-5931 
       25.81         9.76        49.28         8.05         9.27         8.78 
TCGA-50-5932 TCGA-50-5933 TCGA-50-5935 TCGA-50-5936 TCGA-50-5939 TCGA-50-5941 
       35.87        77.88        21.47         8.45        15.12         9.37 
TCGA-50-5942 TCGA-50-5944 TCGA-50-5946 TCGA-50-6590 TCGA-50-6591 TCGA-50-6592 
        4.44        12.26        11.47        42.31         3.88        25.51 
TCGA-50-6593 TCGA-50-6594 TCGA-50-6595 TCGA-50-6597 TCGA-55-1592 TCGA-55-1594 
       11.05        12.16         6.21        33.37        23.05        38.73 
TCGA-55-1595 TCGA-55-1596 TCGA-55-5899 TCGA-55-6543 TCGA-55-6642 TCGA-55-6712 
       48.62        45.17         2.86         0.07        32.61         0.79 
TCGA-64-1676 TCGA-64-1677 TCGA-64-1678 TCGA-64-1680 TCGA-64-5774 TCGA-64-5775 
       56.81        20.65        39.09        37.02        83.84         0.10 
TCGA-64-5778 TCGA-64-5779 TCGA-64-5781 TCGA-64-5815 TCGA-67-3770 TCGA-67-3771 
       30.44        16.67        39.52         7.33         0.99         1.97 
TCGA-67-3772 TCGA-67-3773 TCGA-67-3774 TCGA-67-6215 TCGA-67-6216 TCGA-67-6217 
        0.59         2.04         0.59         0.89         0.69        13.87 
TCGA-71-6725 TCGA-73-4658 TCGA-73-4659 TCGA-73-4662 TCGA-73-4666 TCGA-73-4670 
        2.01        52.57        23.38        29.95        20.28         0.46 
TCGA-73-4675 TCGA-73-4676 TCGA-91-6828 TCGA-91-6829 TCGA-91-6831 TCGA-91-6835 
        1.32         4.01         1.22        41.33         1.28         1.15 
TCGA-91-6836 
        0.36 

  SERPINB4 MUTATED SERPINB4 WILD-TYPE 
              1.25               0.07 
  SERPINB4 MUTATED SERPINB4 WILD-TYPE 
             85.32              83.84 
  SERPINB4 MUTATED SERPINB4 WILD-TYPE 
            29.065             12.990 
[1] "1.2 - 85.3 (29.1)" "0.1 - 83.8 (13.0)"
        TCGA-05-4249         TCGA-05-4250         TCGA-05-4382 
"SERPINB4 WILD-TYPE" "SERPINB4 WILD-TYPE" "SERPINB4 WILD-TYPE" 
        TCGA-05-4384         TCGA-05-4390         TCGA-05-4396 
"SERPINB4 WILD-TYPE" "SERPINB4 WILD-TYPE" "SERPINB4 WILD-TYPE" 
        TCGA-05-4397         TCGA-05-4398         TCGA-05-4402 
"SERPINB4 WILD-TYPE" "SERPINB4 WILD-TYPE" "SERPINB4 WILD-TYPE" 
        TCGA-05-4405         TCGA-05-4415         TCGA-05-4417 
"SERPINB4 WILD-TYPE" "SERPINB4 WILD-TYPE"   "SERPINB4 MUTATED" 
        TCGA-05-4418         TCGA-05-4420         TCGA-05-4424 
"SERPINB4 WILD-TYPE" "SERPINB4 WILD-TYPE"   "SERPINB4 MUTATED" 
        TCGA-05-4426         TCGA-05-4427         TCGA-05-4430 
"SERPINB4 WILD-TYPE" "SERPINB4 WILD-TYPE" "SERPINB4 WILD-TYPE" 
        TCGA-05-4432         TCGA-05-4433         TCGA-05-4434 
"SERPINB4 WILD-TYPE" "SERPINB4 WILD-TYPE" "SERPINB4 WILD-TYPE" 
        TCGA-05-5420         TCGA-05-5423         TCGA-05-5425 
"SERPINB4 WILD-TYPE" "SERPINB4 WILD-TYPE" "SERPINB4 WILD-TYPE" 
        TCGA-05-5429         TCGA-05-5715         TCGA-35-3615 
"SERPINB4 WILD-TYPE" "SERPINB4 WILD-TYPE" "SERPINB4 WILD-TYPE" 
        TCGA-35-4122         TCGA-35-4123         TCGA-35-5375 
"SERPINB4 WILD-TYPE" "SERPINB4 WILD-TYPE" "SERPINB4 WILD-TYPE" 
        TCGA-38-4625         TCGA-38-4626         TCGA-38-4627 
"SERPINB4 WILD-TYPE"   "SERPINB4 MUTATED" "SERPINB4 WILD-TYPE" 
        TCGA-38-4628         TCGA-38-4629         TCGA-38-4630 
"SERPINB4 WILD-TYPE" "SERPINB4 WILD-TYPE" "SERPINB4 WILD-TYPE" 
        TCGA-38-4631         TCGA-38-4632         TCGA-38-6178 
"SERPINB4 WILD-TYPE" "SERPINB4 WILD-TYPE" "SERPINB4 WILD-TYPE" 
        TCGA-44-2655         TCGA-44-2656         TCGA-44-2657 
"SERPINB4 WILD-TYPE" "SERPINB4 WILD-TYPE" "SERPINB4 WILD-TYPE" 
        TCGA-44-2659         TCGA-44-2661         TCGA-44-2662 
"SERPINB4 WILD-TYPE" "SERPINB4 WILD-TYPE" "SERPINB4 WILD-TYPE" 
        TCGA-44-2665         TCGA-44-2666         TCGA-44-2668 
"SERPINB4 WILD-TYPE" "SERPINB4 WILD-TYPE"   "SERPINB4 MUTATED" 
        TCGA-44-3396         TCGA-44-3398         TCGA-44-3918 
"SERPINB4 WILD-TYPE" "SERPINB4 WILD-TYPE" "SERPINB4 WILD-TYPE" 
        TCGA-44-3919         TCGA-44-4112         TCGA-44-5643 
"SERPINB4 WILD-TYPE" "SERPINB4 WILD-TYPE" "SERPINB4 WILD-TYPE" 
        TCGA-44-5645         TCGA-44-6144         TCGA-44-6145 
"SERPINB4 WILD-TYPE" "SERPINB4 WILD-TYPE" "SERPINB4 WILD-TYPE" 
        TCGA-44-6146         TCGA-44-6147         TCGA-44-6148 
"SERPINB4 WILD-TYPE" "SERPINB4 WILD-TYPE" "SERPINB4 WILD-TYPE" 
        TCGA-44-6774         TCGA-44-6775         TCGA-44-6776 
"SERPINB4 WILD-TYPE" "SERPINB4 WILD-TYPE"   "SERPINB4 MUTATED" 
        TCGA-44-6777         TCGA-44-6778         TCGA-44-6779 
"SERPINB4 WILD-TYPE" "SERPINB4 WILD-TYPE" "SERPINB4 WILD-TYPE" 
        TCGA-49-4486         TCGA-49-4487         TCGA-49-4488 
  "SERPINB4 MUTATED"   "SERPINB4 MUTATED" "SERPINB4 WILD-TYPE" 
        TCGA-49-4490         TCGA-49-4494         TCGA-49-4501 
"SERPINB4 WILD-TYPE" "SERPINB4 WILD-TYPE" "SERPINB4 WILD-TYPE" 
        TCGA-49-4505         TCGA-49-4506         TCGA-49-4507 
"SERPINB4 WILD-TYPE" "SERPINB4 WILD-TYPE" "SERPINB4 WILD-TYPE" 
        TCGA-49-4510         TCGA-49-4512         TCGA-49-4514 
"SERPINB4 WILD-TYPE" "SERPINB4 WILD-TYPE" "SERPINB4 WILD-TYPE" 
        TCGA-49-6742         TCGA-49-6743         TCGA-49-6744 
"SERPINB4 WILD-TYPE" "SERPINB4 WILD-TYPE" "SERPINB4 WILD-TYPE" 
        TCGA-49-6745         TCGA-50-5044         TCGA-50-5045 
"SERPINB4 WILD-TYPE" "SERPINB4 WILD-TYPE" "SERPINB4 WILD-TYPE" 
        TCGA-50-5049         TCGA-50-5051         TCGA-50-5055 
  "SERPINB4 MUTATED" "SERPINB4 WILD-TYPE" "SERPINB4 WILD-TYPE" 
        TCGA-50-5066         TCGA-50-5068         TCGA-50-5072 
"SERPINB4 WILD-TYPE" "SERPINB4 WILD-TYPE" "SERPINB4 WILD-TYPE" 
        TCGA-50-5930         TCGA-50-5931         TCGA-50-5932 
"SERPINB4 WILD-TYPE" "SERPINB4 WILD-TYPE" "SERPINB4 WILD-TYPE" 
        TCGA-50-5933         TCGA-50-5935         TCGA-50-5936 
"SERPINB4 WILD-TYPE" "SERPINB4 WILD-TYPE" "SERPINB4 WILD-TYPE" 
        TCGA-50-5939         TCGA-50-5941         TCGA-50-5942 
"SERPINB4 WILD-TYPE" "SERPINB4 WILD-TYPE" "SERPINB4 WILD-TYPE" 
        TCGA-50-5944         TCGA-50-5946         TCGA-50-6590 
"SERPINB4 WILD-TYPE" "SERPINB4 WILD-TYPE" "SERPINB4 WILD-TYPE" 
        TCGA-50-6591         TCGA-50-6592         TCGA-50-6593 
"SERPINB4 WILD-TYPE" "SERPINB4 WILD-TYPE" "SERPINB4 WILD-TYPE" 
        TCGA-50-6594         TCGA-50-6595         TCGA-50-6597 
"SERPINB4 WILD-TYPE" "SERPINB4 WILD-TYPE" "SERPINB4 WILD-TYPE" 
        TCGA-55-1592         TCGA-55-1594         TCGA-55-1595 
"SERPINB4 WILD-TYPE" "SERPINB4 WILD-TYPE" "SERPINB4 WILD-TYPE" 
        TCGA-55-1596         TCGA-55-5899         TCGA-55-6543 
"SERPINB4 WILD-TYPE" "SERPINB4 WILD-TYPE" "SERPINB4 WILD-TYPE" 
        TCGA-55-6642         TCGA-55-6712         TCGA-64-1676 
"SERPINB4 WILD-TYPE" "SERPINB4 WILD-TYPE" "SERPINB4 WILD-TYPE" 
        TCGA-64-1677         TCGA-64-1678         TCGA-64-1680 
"SERPINB4 WILD-TYPE" "SERPINB4 WILD-TYPE" "SERPINB4 WILD-TYPE" 
        TCGA-64-5774         TCGA-64-5775         TCGA-64-5778 
"SERPINB4 WILD-TYPE" "SERPINB4 WILD-TYPE" "SERPINB4 WILD-TYPE" 
        TCGA-64-5779         TCGA-64-5781         TCGA-64-5815 
"SERPINB4 WILD-TYPE" "SERPINB4 WILD-TYPE" "SERPINB4 WILD-TYPE" 
        TCGA-67-3770         TCGA-67-3771         TCGA-67-3772 
"SERPINB4 WILD-TYPE" "SERPINB4 WILD-TYPE" "SERPINB4 WILD-TYPE" 
        TCGA-67-3773         TCGA-67-3774         TCGA-67-6215 
"SERPINB4 WILD-TYPE" "SERPINB4 WILD-TYPE" "SERPINB4 WILD-TYPE" 
        TCGA-67-6216         TCGA-67-6217         TCGA-71-6725 
"SERPINB4 WILD-TYPE" "SERPINB4 WILD-TYPE" "SERPINB4 WILD-TYPE" 
        TCGA-73-4658         TCGA-73-4659         TCGA-73-4662 
"SERPINB4 WILD-TYPE" "SERPINB4 WILD-TYPE" "SERPINB4 WILD-TYPE" 
        TCGA-73-4666         TCGA-73-4668         TCGA-73-4670 
"SERPINB4 WILD-TYPE"   "SERPINB4 MUTATED" "SERPINB4 WILD-TYPE" 
        TCGA-73-4675         TCGA-73-4676         TCGA-73-4677 
"SERPINB4 WILD-TYPE" "SERPINB4 WILD-TYPE"   "SERPINB4 MUTATED" 
        TCGA-91-6828         TCGA-91-6829         TCGA-91-6831 
"SERPINB4 WILD-TYPE" "SERPINB4 WILD-TYPE" "SERPINB4 WILD-TYPE" 
        TCGA-91-6835         TCGA-91-6836 
"SERPINB4 WILD-TYPE" "SERPINB4 WILD-TYPE" 
        TCGA-05-4249         TCGA-05-4250         TCGA-05-4382 
"SERPINB4 WILD-TYPE" "SERPINB4 WILD-TYPE" "SERPINB4 WILD-TYPE" 
        TCGA-05-4384         TCGA-05-4390         TCGA-05-4396 
"SERPINB4 WILD-TYPE" "SERPINB4 WILD-TYPE" "SERPINB4 WILD-TYPE" 
        TCGA-05-4397         TCGA-05-4398         TCGA-05-4402 
"SERPINB4 WILD-TYPE" "SERPINB4 WILD-TYPE" "SERPINB4 WILD-TYPE" 
        TCGA-05-4405         TCGA-05-4415         TCGA-05-4417 
"SERPINB4 WILD-TYPE" "SERPINB4 WILD-TYPE"   "SERPINB4 MUTATED" 
        TCGA-05-4418         TCGA-05-4420         TCGA-05-4424 
"SERPINB4 WILD-TYPE" "SERPINB4 WILD-TYPE"   "SERPINB4 MUTATED" 
        TCGA-05-4426         TCGA-05-4427         TCGA-05-4430 
"SERPINB4 WILD-TYPE" "SERPINB4 WILD-TYPE" "SERPINB4 WILD-TYPE" 
        TCGA-05-4432         TCGA-05-4433         TCGA-05-4434 
"SERPINB4 WILD-TYPE" "SERPINB4 WILD-TYPE" "SERPINB4 WILD-TYPE" 
        TCGA-05-5420         TCGA-05-5423         TCGA-05-5425 
"SERPINB4 WILD-TYPE" "SERPINB4 WILD-TYPE" "SERPINB4 WILD-TYPE" 
        TCGA-05-5429         TCGA-05-5715         TCGA-35-3615 
"SERPINB4 WILD-TYPE" "SERPINB4 WILD-TYPE" "SERPINB4 WILD-TYPE" 
        TCGA-35-4122         TCGA-35-4123         TCGA-35-5375 
"SERPINB4 WILD-TYPE" "SERPINB4 WILD-TYPE" "SERPINB4 WILD-TYPE" 
        TCGA-38-4625         TCGA-38-4626         TCGA-38-4627 
"SERPINB4 WILD-TYPE"   "SERPINB4 MUTATED" "SERPINB4 WILD-TYPE" 
        TCGA-38-4628         TCGA-38-4629         TCGA-38-4630 
"SERPINB4 WILD-TYPE" "SERPINB4 WILD-TYPE" "SERPINB4 WILD-TYPE" 
        TCGA-38-4631         TCGA-38-4632         TCGA-38-6178 
"SERPINB4 WILD-TYPE" "SERPINB4 WILD-TYPE" "SERPINB4 WILD-TYPE" 
        TCGA-44-2655         TCGA-44-2656         TCGA-44-2657 
"SERPINB4 WILD-TYPE" "SERPINB4 WILD-TYPE" "SERPINB4 WILD-TYPE" 
        TCGA-44-2659         TCGA-44-2661         TCGA-44-2662 
"SERPINB4 WILD-TYPE" "SERPINB4 WILD-TYPE" "SERPINB4 WILD-TYPE" 
        TCGA-44-2665         TCGA-44-2666         TCGA-44-2668 
"SERPINB4 WILD-TYPE" "SERPINB4 WILD-TYPE"   "SERPINB4 MUTATED" 
        TCGA-44-3396         TCGA-44-3398         TCGA-44-3918 
"SERPINB4 WILD-TYPE" "SERPINB4 WILD-TYPE" "SERPINB4 WILD-TYPE" 
        TCGA-44-3919         TCGA-44-4112         TCGA-44-5643 
"SERPINB4 WILD-TYPE" "SERPINB4 WILD-TYPE" "SERPINB4 WILD-TYPE" 
        TCGA-44-5645         TCGA-44-6144         TCGA-44-6145 
"SERPINB4 WILD-TYPE" "SERPINB4 WILD-TYPE" "SERPINB4 WILD-TYPE" 
        TCGA-44-6146         TCGA-44-6147         TCGA-44-6148 
"SERPINB4 WILD-TYPE" "SERPINB4 WILD-TYPE" "SERPINB4 WILD-TYPE" 
        TCGA-44-6774         TCGA-44-6775         TCGA-44-6776 
"SERPINB4 WILD-TYPE" "SERPINB4 WILD-TYPE"   "SERPINB4 MUTATED" 
        TCGA-44-6777         TCGA-44-6778         TCGA-44-6779 
"SERPINB4 WILD-TYPE" "SERPINB4 WILD-TYPE" "SERPINB4 WILD-TYPE" 
        TCGA-49-4486         TCGA-49-4487         TCGA-49-4488 
  "SERPINB4 MUTATED"   "SERPINB4 MUTATED" "SERPINB4 WILD-TYPE" 
        TCGA-49-4490         TCGA-49-4494         TCGA-49-4501 
"SERPINB4 WILD-TYPE" "SERPINB4 WILD-TYPE" "SERPINB4 WILD-TYPE" 
        TCGA-49-4505         TCGA-49-4506         TCGA-49-4507 
"SERPINB4 WILD-TYPE" "SERPINB4 WILD-TYPE" "SERPINB4 WILD-TYPE" 
        TCGA-49-4510         TCGA-49-4512         TCGA-49-4514 
"SERPINB4 WILD-TYPE" "SERPINB4 WILD-TYPE" "SERPINB4 WILD-TYPE" 
        TCGA-49-6742         TCGA-49-6743         TCGA-49-6744 
"SERPINB4 WILD-TYPE" "SERPINB4 WILD-TYPE" "SERPINB4 WILD-TYPE" 
        TCGA-49-6745         TCGA-50-5044         TCGA-50-5045 
"SERPINB4 WILD-TYPE" "SERPINB4 WILD-TYPE" "SERPINB4 WILD-TYPE" 
        TCGA-50-5049         TCGA-50-5051         TCGA-50-5055 
  "SERPINB4 MUTATED" "SERPINB4 WILD-TYPE" "SERPINB4 WILD-TYPE" 
        TCGA-50-5066         TCGA-50-5068         TCGA-50-5072 
"SERPINB4 WILD-TYPE" "SERPINB4 WILD-TYPE" "SERPINB4 WILD-TYPE" 
        TCGA-50-5930         TCGA-50-5931         TCGA-50-5932 
"SERPINB4 WILD-TYPE" "SERPINB4 WILD-TYPE" "SERPINB4 WILD-TYPE" 
        TCGA-50-5933         TCGA-50-5935         TCGA-50-5936 
"SERPINB4 WILD-TYPE" "SERPINB4 WILD-TYPE" "SERPINB4 WILD-TYPE" 
        TCGA-50-5939         TCGA-50-5941         TCGA-50-5942 
"SERPINB4 WILD-TYPE" "SERPINB4 WILD-TYPE" "SERPINB4 WILD-TYPE" 
        TCGA-50-5944         TCGA-50-5946         TCGA-50-6590 
"SERPINB4 WILD-TYPE" "SERPINB4 WILD-TYPE" "SERPINB4 WILD-TYPE" 
        TCGA-50-6591         TCGA-50-6592         TCGA-50-6593 
"SERPINB4 WILD-TYPE" "SERPINB4 WILD-TYPE" "SERPINB4 WILD-TYPE" 
        TCGA-50-6594         TCGA-50-6595         TCGA-50-6597 
"SERPINB4 WILD-TYPE" "SERPINB4 WILD-TYPE" "SERPINB4 WILD-TYPE" 
        TCGA-55-1592         TCGA-55-1594         TCGA-55-1595 
"SERPINB4 WILD-TYPE" "SERPINB4 WILD-TYPE" "SERPINB4 WILD-TYPE" 
        TCGA-55-1596         TCGA-55-5899         TCGA-55-6543 
"SERPINB4 WILD-TYPE" "SERPINB4 WILD-TYPE" "SERPINB4 WILD-TYPE" 
        TCGA-55-6642         TCGA-55-6712         TCGA-64-1676 
"SERPINB4 WILD-TYPE" "SERPINB4 WILD-TYPE" "SERPINB4 WILD-TYPE" 
        TCGA-64-1677         TCGA-64-1678         TCGA-64-1680 
"SERPINB4 WILD-TYPE" "SERPINB4 WILD-TYPE" "SERPINB4 WILD-TYPE" 
        TCGA-64-5774         TCGA-64-5775         TCGA-64-5778 
"SERPINB4 WILD-TYPE" "SERPINB4 WILD-TYPE" "SERPINB4 WILD-TYPE" 
        TCGA-64-5779         TCGA-64-5781         TCGA-64-5815 
"SERPINB4 WILD-TYPE" "SERPINB4 WILD-TYPE" "SERPINB4 WILD-TYPE" 
        TCGA-67-3770         TCGA-67-3771         TCGA-67-3772 
"SERPINB4 WILD-TYPE" "SERPINB4 WILD-TYPE" "SERPINB4 WILD-TYPE" 
        TCGA-67-3773         TCGA-67-3774         TCGA-67-6215 
"SERPINB4 WILD-TYPE" "SERPINB4 WILD-TYPE" "SERPINB4 WILD-TYPE" 
        TCGA-67-6216         TCGA-67-6217         TCGA-71-6725 
"SERPINB4 WILD-TYPE" "SERPINB4 WILD-TYPE" "SERPINB4 WILD-TYPE" 
        TCGA-73-4658         TCGA-73-4659         TCGA-73-4662 
"SERPINB4 WILD-TYPE" "SERPINB4 WILD-TYPE" "SERPINB4 WILD-TYPE" 
        TCGA-73-4666         TCGA-73-4668         TCGA-73-4670 
"SERPINB4 WILD-TYPE"   "SERPINB4 MUTATED" "SERPINB4 WILD-TYPE" 
        TCGA-73-4675         TCGA-73-4676         TCGA-73-4677 
"SERPINB4 WILD-TYPE" "SERPINB4 WILD-TYPE"   "SERPINB4 MUTATED" 
        TCGA-91-6828         TCGA-91-6829         TCGA-91-6831 
"SERPINB4 WILD-TYPE" "SERPINB4 WILD-TYPE" "SERPINB4 WILD-TYPE" 
        TCGA-91-6835         TCGA-91-6836 
"SERPINB4 WILD-TYPE" "SERPINB4 WILD-TYPE" 
        TCGA-05-4249         TCGA-05-4250         TCGA-05-4382 
"SERPINB4 WILD-TYPE" "SERPINB4 WILD-TYPE" "SERPINB4 WILD-TYPE" 
        TCGA-05-4384         TCGA-05-4390         TCGA-05-4396 
"SERPINB4 WILD-TYPE" "SERPINB4 WILD-TYPE" "SERPINB4 WILD-TYPE" 
        TCGA-05-4397         TCGA-05-4398         TCGA-05-4402 
"SERPINB4 WILD-TYPE" "SERPINB4 WILD-TYPE" "SERPINB4 WILD-TYPE" 
        TCGA-05-4405         TCGA-05-4415         TCGA-05-4417 
"SERPINB4 WILD-TYPE" "SERPINB4 WILD-TYPE"   "SERPINB4 MUTATED" 
        TCGA-05-4418         TCGA-05-4420         TCGA-05-4424 
"SERPINB4 WILD-TYPE" "SERPINB4 WILD-TYPE"   "SERPINB4 MUTATED" 
        TCGA-05-4426         TCGA-05-4427         TCGA-05-4430 
"SERPINB4 WILD-TYPE" "SERPINB4 WILD-TYPE" "SERPINB4 WILD-TYPE" 
        TCGA-05-4432         TCGA-05-4433         TCGA-05-4434 
"SERPINB4 WILD-TYPE" "SERPINB4 WILD-TYPE" "SERPINB4 WILD-TYPE" 
        TCGA-05-5420         TCGA-05-5423         TCGA-05-5425 
"SERPINB4 WILD-TYPE" "SERPINB4 WILD-TYPE" "SERPINB4 WILD-TYPE" 
        TCGA-05-5429         TCGA-05-5715         TCGA-35-3615 
"SERPINB4 WILD-TYPE" "SERPINB4 WILD-TYPE" "SERPINB4 WILD-TYPE" 
        TCGA-35-4122         TCGA-35-4123         TCGA-35-5375 
"SERPINB4 WILD-TYPE" "SERPINB4 WILD-TYPE" "SERPINB4 WILD-TYPE" 
        TCGA-38-4625         TCGA-38-4626         TCGA-38-4627 
"SERPINB4 WILD-TYPE"   "SERPINB4 MUTATED" "SERPINB4 WILD-TYPE" 
        TCGA-38-4628         TCGA-38-4629         TCGA-38-4630 
"SERPINB4 WILD-TYPE" "SERPINB4 WILD-TYPE" "SERPINB4 WILD-TYPE" 
        TCGA-38-4631         TCGA-38-4632         TCGA-38-6178 
"SERPINB4 WILD-TYPE" "SERPINB4 WILD-TYPE" "SERPINB4 WILD-TYPE" 
        TCGA-44-2655         TCGA-44-2656         TCGA-44-2657 
"SERPINB4 WILD-TYPE" "SERPINB4 WILD-TYPE" "SERPINB4 WILD-TYPE" 
        TCGA-44-2659         TCGA-44-2661         TCGA-44-2662 
"SERPINB4 WILD-TYPE" "SERPINB4 WILD-TYPE" "SERPINB4 WILD-TYPE" 
        TCGA-44-2665         TCGA-44-2666         TCGA-44-2668 
"SERPINB4 WILD-TYPE" "SERPINB4 WILD-TYPE"   "SERPINB4 MUTATED" 
        TCGA-44-3396         TCGA-44-3398         TCGA-44-3918 
"SERPINB4 WILD-TYPE" "SERPINB4 WILD-TYPE" "SERPINB4 WILD-TYPE" 
        TCGA-44-3919         TCGA-44-4112         TCGA-44-5643 
"SERPINB4 WILD-TYPE" "SERPINB4 WILD-TYPE" "SERPINB4 WILD-TYPE" 
        TCGA-44-5645         TCGA-44-6144         TCGA-44-6145 
"SERPINB4 WILD-TYPE" "SERPINB4 WILD-TYPE" "SERPINB4 WILD-TYPE" 
        TCGA-44-6146         TCGA-44-6147         TCGA-44-6148 
"SERPINB4 WILD-TYPE" "SERPINB4 WILD-TYPE" "SERPINB4 WILD-TYPE" 
        TCGA-44-6774         TCGA-44-6775         TCGA-44-6776 
"SERPINB4 WILD-TYPE" "SERPINB4 WILD-TYPE"   "SERPINB4 MUTATED" 
        TCGA-44-6777         TCGA-44-6778         TCGA-44-6779 
"SERPINB4 WILD-TYPE" "SERPINB4 WILD-TYPE" "SERPINB4 WILD-TYPE" 
        TCGA-49-4486         TCGA-49-4487         TCGA-49-4488 
  "SERPINB4 MUTATED"   "SERPINB4 MUTATED" "SERPINB4 WILD-TYPE" 
        TCGA-49-4490         TCGA-49-4494         TCGA-49-4501 
"SERPINB4 WILD-TYPE" "SERPINB4 WILD-TYPE" "SERPINB4 WILD-TYPE" 
        TCGA-49-4505         TCGA-49-4506         TCGA-49-4507 
"SERPINB4 WILD-TYPE" "SERPINB4 WILD-TYPE" "SERPINB4 WILD-TYPE" 
        TCGA-49-4510         TCGA-49-4512         TCGA-49-4514 
"SERPINB4 WILD-TYPE" "SERPINB4 WILD-TYPE" "SERPINB4 WILD-TYPE" 
        TCGA-49-6742         TCGA-49-6743         TCGA-49-6744 
"SERPINB4 WILD-TYPE" "SERPINB4 WILD-TYPE" "SERPINB4 WILD-TYPE" 
        TCGA-49-6745         TCGA-50-5044         TCGA-50-5045 
"SERPINB4 WILD-TYPE" "SERPINB4 WILD-TYPE" "SERPINB4 WILD-TYPE" 
        TCGA-50-5049         TCGA-50-5051         TCGA-50-5055 
  "SERPINB4 MUTATED" "SERPINB4 WILD-TYPE" "SERPINB4 WILD-TYPE" 
        TCGA-50-5066         TCGA-50-5068         TCGA-50-5072 
"SERPINB4 WILD-TYPE" "SERPINB4 WILD-TYPE" "SERPINB4 WILD-TYPE" 
        TCGA-50-5930         TCGA-50-5931         TCGA-50-5932 
"SERPINB4 WILD-TYPE" "SERPINB4 WILD-TYPE" "SERPINB4 WILD-TYPE" 
        TCGA-50-5933         TCGA-50-5935         TCGA-50-5936 
"SERPINB4 WILD-TYPE" "SERPINB4 WILD-TYPE" "SERPINB4 WILD-TYPE" 
        TCGA-50-5939         TCGA-50-5941         TCGA-50-5942 
"SERPINB4 WILD-TYPE" "SERPINB4 WILD-TYPE" "SERPINB4 WILD-TYPE" 
        TCGA-50-5944         TCGA-50-5946         TCGA-50-6590 
"SERPINB4 WILD-TYPE" "SERPINB4 WILD-TYPE" "SERPINB4 WILD-TYPE" 
        TCGA-50-6591         TCGA-50-6592         TCGA-50-6593 
"SERPINB4 WILD-TYPE" "SERPINB4 WILD-TYPE" "SERPINB4 WILD-TYPE" 
        TCGA-50-6594         TCGA-50-6595         TCGA-50-6597 
"SERPINB4 WILD-TYPE" "SERPINB4 WILD-TYPE" "SERPINB4 WILD-TYPE" 
        TCGA-55-1592         TCGA-55-1594         TCGA-55-1595 
"SERPINB4 WILD-TYPE" "SERPINB4 WILD-TYPE" "SERPINB4 WILD-TYPE" 
        TCGA-55-1596         TCGA-55-5899         TCGA-55-6543 
"SERPINB4 WILD-TYPE" "SERPINB4 WILD-TYPE" "SERPINB4 WILD-TYPE" 
        TCGA-55-6642         TCGA-55-6712         TCGA-64-1676 
"SERPINB4 WILD-TYPE" "SERPINB4 WILD-TYPE" "SERPINB4 WILD-TYPE" 
        TCGA-64-1677         TCGA-64-1678         TCGA-64-1680 
"SERPINB4 WILD-TYPE" "SERPINB4 WILD-TYPE" "SERPINB4 WILD-TYPE" 
        TCGA-64-5774         TCGA-64-5775         TCGA-64-5778 
"SERPINB4 WILD-TYPE" "SERPINB4 WILD-TYPE" "SERPINB4 WILD-TYPE" 
        TCGA-64-5779         TCGA-64-5781         TCGA-64-5815 
"SERPINB4 WILD-TYPE" "SERPINB4 WILD-TYPE" "SERPINB4 WILD-TYPE" 
        TCGA-67-3770         TCGA-67-3771         TCGA-67-3772 
"SERPINB4 WILD-TYPE" "SERPINB4 WILD-TYPE" "SERPINB4 WILD-TYPE" 
        TCGA-67-3773         TCGA-67-3774         TCGA-67-6215 
"SERPINB4 WILD-TYPE" "SERPINB4 WILD-TYPE" "SERPINB4 WILD-TYPE" 
        TCGA-67-6216         TCGA-67-6217         TCGA-71-6725 
"SERPINB4 WILD-TYPE" "SERPINB4 WILD-TYPE" "SERPINB4 WILD-TYPE" 
        TCGA-73-4658         TCGA-73-4659         TCGA-73-4662 
"SERPINB4 WILD-TYPE" "SERPINB4 WILD-TYPE" "SERPINB4 WILD-TYPE" 
        TCGA-73-4666         TCGA-73-4668         TCGA-73-4670 
"SERPINB4 WILD-TYPE"   "SERPINB4 MUTATED" "SERPINB4 WILD-TYPE" 
        TCGA-73-4675         TCGA-73-4676         TCGA-73-4677 
"SERPINB4 WILD-TYPE" "SERPINB4 WILD-TYPE"   "SERPINB4 MUTATED" 
        TCGA-91-6828         TCGA-91-6829         TCGA-91-6831 
"SERPINB4 WILD-TYPE" "SERPINB4 WILD-TYPE" "SERPINB4 WILD-TYPE" 
        TCGA-91-6835         TCGA-91-6836 
"SERPINB4 WILD-TYPE" "SERPINB4 WILD-TYPE" 
[1] "hr=" "2.8"
D29V2, continuous
D29V3, binary
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  SERPINB4 MUTATED      5    5
  SERPINB4 WILD-TYPE   88   74
        clus
vv       SERPINB4 MUTATED SERPINB4 WILD-TYPE
  FEMALE                5                 88
  MALE                  5                 74
D29V4, continuous
[1] "Remove cluster labels:" "SERPINB4 MUTATED"      
clus
  SERPINB4 MUTATED SERPINB4 WILD-TYPE 
                 1                 11 
        TCGA-35-4122         TCGA-35-4123         TCGA-35-5375 
"SERPINB4 WILD-TYPE" "SERPINB4 WILD-TYPE" "SERPINB4 WILD-TYPE" 
        TCGA-64-1677         TCGA-64-5778         TCGA-71-6725 
"SERPINB4 WILD-TYPE" "SERPINB4 WILD-TYPE" "SERPINB4 WILD-TYPE" 
        TCGA-73-4659         TCGA-73-4662         TCGA-73-4666 
"SERPINB4 WILD-TYPE" "SERPINB4 WILD-TYPE" "SERPINB4 WILD-TYPE" 
        TCGA-73-4676         TCGA-75-5122 
"SERPINB4 WILD-TYPE" "SERPINB4 WILD-TYPE" 
D29V5, multiclass
D29V6, multiclass
    clus
vv   SERPINB4 MUTATED SERPINB4 WILD-TYPE
  T1                3                 38
  T2                6                102
  T3                1                 13
  T4                0                  8
D29V7, multiclass
       clus
vv      SERPINB4 MUTATED SERPINB4 WILD-TYPE
  N0                   9                 86
  N1                   1                 36
  N2+N3                0                 35
D29V8, multiclass
    clus
vv   SERPINB4 MUTATED SERPINB4 WILD-TYPE
  M0                9                128
  M1                0                  9
  MX                1                 21
D29V9, multiclass
     clus
vv    SERPINB4 MUTATED SERPINB4 WILD-TYPE
  I                  7                 81
  II                 3                 30
  III                0                 39
  IV                 0                  9
D29V10, binary
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  SERPINB4 MUTATED      1    9
  SERPINB4 WILD-TYPE   15  147
     clus
vv    SERPINB4 MUTATED SERPINB4 WILD-TYPE
  NO                 1                 15
  YES                9                147
D29V11, continuous
D29V12, continuous
D29V13, multiclass
                                             clus
vv                                            SERPINB4 MUTATED
  CURRENT REFORMED SMOKER FOR < OR = 15 YEARS                6
  CURRENT REFORMED SMOKER FOR > 15 YEARS                     2
  CURRENT SMOKER                                             1
  LIFELONG NON-SMOKER                                        0
                                             clus
vv                                            SERPINB4 WILD-TYPE
  CURRENT REFORMED SMOKER FOR < OR = 15 YEARS                 56
  CURRENT REFORMED SMOKER FOR > 15 YEARS                      44
  CURRENT SMOKER                                              27
  LIFELONG NON-SMOKER                                         24
D29V14, continuous

Clustering(30) Variable = OR2L8 MUTATION ANALYSIS
D30V1, survival
                 sevent
clus2              0  1
  OR2L8 MUTATED    9  3
  OR2L8 WILD-TYPE 90 47
  OR2L8 MUTATED OR2L8 WILD-TYPE 
             12             137 
  OR2L8 MUTATED OR2L8 WILD-TYPE 
              3              47 
$`OR2L8 MUTATED`
TCGA-05-4382 TCGA-05-4396 TCGA-05-4427 TCGA-35-4123 TCGA-38-4626 TCGA-38-4629 
       19.92         9.96        26.01         5.95        85.32        28.37 
TCGA-44-2662 TCGA-44-3918 TCGA-49-4488 TCGA-50-5066 TCGA-55-1596 TCGA-64-1676 
       15.78         6.44        28.57         9.76        45.17        56.81 

$`OR2L8 WILD-TYPE`
TCGA-05-4249 TCGA-05-4250 TCGA-05-4384 TCGA-05-4390 TCGA-05-4397 TCGA-05-4398 
       38.07         3.98        14.01        37.02        24.03        47.05 
TCGA-05-4402 TCGA-05-4405 TCGA-05-4415 TCGA-05-4417 TCGA-05-4418 TCGA-05-4420 
        8.02        20.05         2.96        14.93         8.98        29.95 
TCGA-05-4424 TCGA-05-4426 TCGA-05-4430 TCGA-05-4432 TCGA-05-4433 TCGA-05-4434 
       30.02        26.01        25.02        25.02        24.00        15.02 
TCGA-05-5420 TCGA-05-5423 TCGA-05-5425 TCGA-05-5429 TCGA-05-5715 TCGA-35-3615 
        1.02         4.96         2.96         0.99         2.04         0.46 
TCGA-35-4122 TCGA-35-5375 TCGA-38-4625 TCGA-38-4627 TCGA-38-4628 TCGA-38-4630 
        7.36         8.68        47.61        37.71        49.02        35.28 
TCGA-38-4631 TCGA-38-4632 TCGA-38-6178 TCGA-44-2655 TCGA-44-2656 TCGA-44-2657 
       11.64        44.61         5.19        18.87        19.10        13.15 
TCGA-44-2659 TCGA-44-2661 TCGA-44-2665 TCGA-44-2666 TCGA-44-2668 TCGA-44-3396 
       17.39         3.39        13.15         3.19         8.09        10.22 
TCGA-44-3398 TCGA-44-3919 TCGA-44-4112 TCGA-44-5643 TCGA-44-5645 TCGA-44-6144 
        8.32         6.21         4.60         3.48         6.84         0.30 
TCGA-44-6145 TCGA-44-6146 TCGA-44-6147 TCGA-44-6148 TCGA-44-6774 TCGA-44-6775 
        3.35         9.93         7.76         3.12         5.42         2.70 
TCGA-44-6776 TCGA-44-6777 TCGA-44-6778 TCGA-44-6779 TCGA-49-4486 TCGA-49-4487 
       63.72        32.45        36.49        16.41        76.21        28.11 
TCGA-49-4490 TCGA-49-4494 TCGA-49-4501 TCGA-49-4505 TCGA-49-4506 TCGA-49-4507 
       12.66        35.54        46.72        14.07        32.84         8.81 
TCGA-49-4510 TCGA-49-4512 TCGA-49-4514 TCGA-49-6742 TCGA-49-6743 TCGA-49-6744 
       29.46        29.75        43.20        15.02        12.13        12.99 
TCGA-49-6745 TCGA-50-5044 TCGA-50-5045 TCGA-50-5049 TCGA-50-5051 TCGA-50-5055 
        4.93        20.48        71.47        48.82        14.96        25.81 
TCGA-50-5068 TCGA-50-5072 TCGA-50-5930 TCGA-50-5931 TCGA-50-5932 TCGA-50-5933 
       49.28         8.05         9.27         8.78        35.87        77.88 
TCGA-50-5935 TCGA-50-5936 TCGA-50-5939 TCGA-50-5941 TCGA-50-5942 TCGA-50-5944 
       21.47         8.45        15.12         9.37         4.44        12.26 
TCGA-50-5946 TCGA-50-6590 TCGA-50-6591 TCGA-50-6592 TCGA-50-6593 TCGA-50-6594 
       11.47        42.31         3.88        25.51        11.05        12.16 
TCGA-50-6595 TCGA-50-6597 TCGA-55-1592 TCGA-55-1594 TCGA-55-1595 TCGA-55-5899 
        6.21        33.37        23.05        38.73        48.62         2.86 
TCGA-55-6543 TCGA-55-6642 TCGA-55-6712 TCGA-64-1677 TCGA-64-1678 TCGA-64-1680 
        0.07        32.61         0.79        20.65        39.09        37.02 
TCGA-64-5774 TCGA-64-5775 TCGA-64-5778 TCGA-64-5779 TCGA-64-5781 TCGA-64-5815 
       83.84         0.10        30.44        16.67        39.52         7.33 
TCGA-67-3770 TCGA-67-3771 TCGA-67-3772 TCGA-67-3773 TCGA-67-3774 TCGA-67-6215 
        0.99         1.97         0.59         2.04         0.59         0.89 
TCGA-67-6216 TCGA-67-6217 TCGA-71-6725 TCGA-73-4658 TCGA-73-4659 TCGA-73-4662 
        0.69        13.87         2.01        52.57        23.38        29.95 
TCGA-73-4666 TCGA-73-4668 TCGA-73-4670 TCGA-73-4675 TCGA-73-4676 TCGA-73-4677 
       20.28        15.35         0.46         1.32         4.01         1.25 
TCGA-91-6828 TCGA-91-6829 TCGA-91-6831 TCGA-91-6835 TCGA-91-6836 
        1.22        41.33         1.28         1.15         0.36 

  OR2L8 MUTATED OR2L8 WILD-TYPE 
           5.95            0.07 
  OR2L8 MUTATED OR2L8 WILD-TYPE 
          85.32           83.84 
  OR2L8 MUTATED OR2L8 WILD-TYPE 
         22.965          13.150 
[1] "6.0 - 85.3 (23.0)" "0.1 - 83.8 (13.2)"
     TCGA-05-4249      TCGA-05-4250      TCGA-05-4382      TCGA-05-4384 
"OR2L8 WILD-TYPE" "OR2L8 WILD-TYPE"   "OR2L8 MUTATED" "OR2L8 WILD-TYPE" 
     TCGA-05-4390      TCGA-05-4396      TCGA-05-4397      TCGA-05-4398 
"OR2L8 WILD-TYPE"   "OR2L8 MUTATED" "OR2L8 WILD-TYPE" "OR2L8 WILD-TYPE" 
     TCGA-05-4402      TCGA-05-4405      TCGA-05-4415      TCGA-05-4417 
"OR2L8 WILD-TYPE" "OR2L8 WILD-TYPE" "OR2L8 WILD-TYPE" "OR2L8 WILD-TYPE" 
     TCGA-05-4418      TCGA-05-4420      TCGA-05-4424      TCGA-05-4426 
"OR2L8 WILD-TYPE" "OR2L8 WILD-TYPE" "OR2L8 WILD-TYPE" "OR2L8 WILD-TYPE" 
     TCGA-05-4427      TCGA-05-4430      TCGA-05-4432      TCGA-05-4433 
  "OR2L8 MUTATED" "OR2L8 WILD-TYPE" "OR2L8 WILD-TYPE" "OR2L8 WILD-TYPE" 
     TCGA-05-4434      TCGA-05-5420      TCGA-05-5423      TCGA-05-5425 
"OR2L8 WILD-TYPE" "OR2L8 WILD-TYPE" "OR2L8 WILD-TYPE" "OR2L8 WILD-TYPE" 
     TCGA-05-5429      TCGA-05-5715      TCGA-35-3615      TCGA-35-4122 
"OR2L8 WILD-TYPE" "OR2L8 WILD-TYPE" "OR2L8 WILD-TYPE" "OR2L8 WILD-TYPE" 
     TCGA-35-4123      TCGA-35-5375      TCGA-38-4625      TCGA-38-4626 
  "OR2L8 MUTATED" "OR2L8 WILD-TYPE" "OR2L8 WILD-TYPE"   "OR2L8 MUTATED" 
     TCGA-38-4627      TCGA-38-4628      TCGA-38-4629      TCGA-38-4630 
"OR2L8 WILD-TYPE" "OR2L8 WILD-TYPE"   "OR2L8 MUTATED" "OR2L8 WILD-TYPE" 
     TCGA-38-4631      TCGA-38-4632      TCGA-38-6178      TCGA-44-2655 
"OR2L8 WILD-TYPE" "OR2L8 WILD-TYPE" "OR2L8 WILD-TYPE" "OR2L8 WILD-TYPE" 
     TCGA-44-2656      TCGA-44-2657      TCGA-44-2659      TCGA-44-2661 
"OR2L8 WILD-TYPE" "OR2L8 WILD-TYPE" "OR2L8 WILD-TYPE" "OR2L8 WILD-TYPE" 
     TCGA-44-2662      TCGA-44-2665      TCGA-44-2666      TCGA-44-2668 
  "OR2L8 MUTATED" "OR2L8 WILD-TYPE" "OR2L8 WILD-TYPE" "OR2L8 WILD-TYPE" 
     TCGA-44-3396      TCGA-44-3398      TCGA-44-3918      TCGA-44-3919 
"OR2L8 WILD-TYPE" "OR2L8 WILD-TYPE"   "OR2L8 MUTATED" "OR2L8 WILD-TYPE" 
     TCGA-44-4112      TCGA-44-5643      TCGA-44-5645      TCGA-44-6144 
"OR2L8 WILD-TYPE" "OR2L8 WILD-TYPE" "OR2L8 WILD-TYPE" "OR2L8 WILD-TYPE" 
     TCGA-44-6145      TCGA-44-6146      TCGA-44-6147      TCGA-44-6148 
"OR2L8 WILD-TYPE" "OR2L8 WILD-TYPE" "OR2L8 WILD-TYPE" "OR2L8 WILD-TYPE" 
     TCGA-44-6774      TCGA-44-6775      TCGA-44-6776      TCGA-44-6777 
"OR2L8 WILD-TYPE" "OR2L8 WILD-TYPE" "OR2L8 WILD-TYPE" "OR2L8 WILD-TYPE" 
     TCGA-44-6778      TCGA-44-6779      TCGA-49-4486      TCGA-49-4487 
"OR2L8 WILD-TYPE" "OR2L8 WILD-TYPE" "OR2L8 WILD-TYPE" "OR2L8 WILD-TYPE" 
     TCGA-49-4488      TCGA-49-4490      TCGA-49-4494      TCGA-49-4501 
  "OR2L8 MUTATED" "OR2L8 WILD-TYPE" "OR2L8 WILD-TYPE" "OR2L8 WILD-TYPE" 
     TCGA-49-4505      TCGA-49-4506      TCGA-49-4507      TCGA-49-4510 
"OR2L8 WILD-TYPE" "OR2L8 WILD-TYPE" "OR2L8 WILD-TYPE" "OR2L8 WILD-TYPE" 
     TCGA-49-4512      TCGA-49-4514      TCGA-49-6742      TCGA-49-6743 
"OR2L8 WILD-TYPE" "OR2L8 WILD-TYPE" "OR2L8 WILD-TYPE" "OR2L8 WILD-TYPE" 
     TCGA-49-6744      TCGA-49-6745      TCGA-50-5044      TCGA-50-5045 
"OR2L8 WILD-TYPE" "OR2L8 WILD-TYPE" "OR2L8 WILD-TYPE" "OR2L8 WILD-TYPE" 
     TCGA-50-5049      TCGA-50-5051      TCGA-50-5055      TCGA-50-5066 
"OR2L8 WILD-TYPE" "OR2L8 WILD-TYPE" "OR2L8 WILD-TYPE"   "OR2L8 MUTATED" 
     TCGA-50-5068      TCGA-50-5072      TCGA-50-5930      TCGA-50-5931 
"OR2L8 WILD-TYPE" "OR2L8 WILD-TYPE" "OR2L8 WILD-TYPE" "OR2L8 WILD-TYPE" 
     TCGA-50-5932      TCGA-50-5933      TCGA-50-5935      TCGA-50-5936 
"OR2L8 WILD-TYPE" "OR2L8 WILD-TYPE" "OR2L8 WILD-TYPE" "OR2L8 WILD-TYPE" 
     TCGA-50-5939      TCGA-50-5941      TCGA-50-5942      TCGA-50-5944 
"OR2L8 WILD-TYPE" "OR2L8 WILD-TYPE" "OR2L8 WILD-TYPE" "OR2L8 WILD-TYPE" 
     TCGA-50-5946      TCGA-50-6590      TCGA-50-6591      TCGA-50-6592 
"OR2L8 WILD-TYPE" "OR2L8 WILD-TYPE" "OR2L8 WILD-TYPE" "OR2L8 WILD-TYPE" 
     TCGA-50-6593      TCGA-50-6594      TCGA-50-6595      TCGA-50-6597 
"OR2L8 WILD-TYPE" "OR2L8 WILD-TYPE" "OR2L8 WILD-TYPE" "OR2L8 WILD-TYPE" 
     TCGA-55-1592      TCGA-55-1594      TCGA-55-1595      TCGA-55-1596 
"OR2L8 WILD-TYPE" "OR2L8 WILD-TYPE" "OR2L8 WILD-TYPE"   "OR2L8 MUTATED" 
     TCGA-55-5899      TCGA-55-6543      TCGA-55-6642      TCGA-55-6712 
"OR2L8 WILD-TYPE" "OR2L8 WILD-TYPE" "OR2L8 WILD-TYPE" "OR2L8 WILD-TYPE" 
     TCGA-64-1676      TCGA-64-1677      TCGA-64-1678      TCGA-64-1680 
  "OR2L8 MUTATED" "OR2L8 WILD-TYPE" "OR2L8 WILD-TYPE" "OR2L8 WILD-TYPE" 
     TCGA-64-5774      TCGA-64-5775      TCGA-64-5778      TCGA-64-5779 
"OR2L8 WILD-TYPE" "OR2L8 WILD-TYPE" "OR2L8 WILD-TYPE" "OR2L8 WILD-TYPE" 
     TCGA-64-5781      TCGA-64-5815      TCGA-67-3770      TCGA-67-3771 
"OR2L8 WILD-TYPE" "OR2L8 WILD-TYPE" "OR2L8 WILD-TYPE" "OR2L8 WILD-TYPE" 
     TCGA-67-3772      TCGA-67-3773      TCGA-67-3774      TCGA-67-6215 
"OR2L8 WILD-TYPE" "OR2L8 WILD-TYPE" "OR2L8 WILD-TYPE" "OR2L8 WILD-TYPE" 
     TCGA-67-6216      TCGA-67-6217      TCGA-71-6725      TCGA-73-4658 
"OR2L8 WILD-TYPE" "OR2L8 WILD-TYPE" "OR2L8 WILD-TYPE" "OR2L8 WILD-TYPE" 
     TCGA-73-4659      TCGA-73-4662      TCGA-73-4666      TCGA-73-4668 
"OR2L8 WILD-TYPE" "OR2L8 WILD-TYPE" "OR2L8 WILD-TYPE" "OR2L8 WILD-TYPE" 
     TCGA-73-4670      TCGA-73-4675      TCGA-73-4676      TCGA-73-4677 
"OR2L8 WILD-TYPE" "OR2L8 WILD-TYPE" "OR2L8 WILD-TYPE" "OR2L8 WILD-TYPE" 
     TCGA-91-6828      TCGA-91-6829      TCGA-91-6831      TCGA-91-6835 
"OR2L8 WILD-TYPE" "OR2L8 WILD-TYPE" "OR2L8 WILD-TYPE" "OR2L8 WILD-TYPE" 
     TCGA-91-6836 
"OR2L8 WILD-TYPE" 
     TCGA-05-4249      TCGA-05-4250      TCGA-05-4382      TCGA-05-4384 
"OR2L8 WILD-TYPE" "OR2L8 WILD-TYPE"   "OR2L8 MUTATED" "OR2L8 WILD-TYPE" 
     TCGA-05-4390      TCGA-05-4396      TCGA-05-4397      TCGA-05-4398 
"OR2L8 WILD-TYPE"   "OR2L8 MUTATED" "OR2L8 WILD-TYPE" "OR2L8 WILD-TYPE" 
     TCGA-05-4402      TCGA-05-4405      TCGA-05-4415      TCGA-05-4417 
"OR2L8 WILD-TYPE" "OR2L8 WILD-TYPE" "OR2L8 WILD-TYPE" "OR2L8 WILD-TYPE" 
     TCGA-05-4418      TCGA-05-4420      TCGA-05-4424      TCGA-05-4426 
"OR2L8 WILD-TYPE" "OR2L8 WILD-TYPE" "OR2L8 WILD-TYPE" "OR2L8 WILD-TYPE" 
     TCGA-05-4427      TCGA-05-4430      TCGA-05-4432      TCGA-05-4433 
  "OR2L8 MUTATED" "OR2L8 WILD-TYPE" "OR2L8 WILD-TYPE" "OR2L8 WILD-TYPE" 
     TCGA-05-4434      TCGA-05-5420      TCGA-05-5423      TCGA-05-5425 
"OR2L8 WILD-TYPE" "OR2L8 WILD-TYPE" "OR2L8 WILD-TYPE" "OR2L8 WILD-TYPE" 
     TCGA-05-5429      TCGA-05-5715      TCGA-35-3615      TCGA-35-4122 
"OR2L8 WILD-TYPE" "OR2L8 WILD-TYPE" "OR2L8 WILD-TYPE" "OR2L8 WILD-TYPE" 
     TCGA-35-4123      TCGA-35-5375      TCGA-38-4625      TCGA-38-4626 
  "OR2L8 MUTATED" "OR2L8 WILD-TYPE" "OR2L8 WILD-TYPE"   "OR2L8 MUTATED" 
     TCGA-38-4627      TCGA-38-4628      TCGA-38-4629      TCGA-38-4630 
"OR2L8 WILD-TYPE" "OR2L8 WILD-TYPE"   "OR2L8 MUTATED" "OR2L8 WILD-TYPE" 
     TCGA-38-4631      TCGA-38-4632      TCGA-38-6178      TCGA-44-2655 
"OR2L8 WILD-TYPE" "OR2L8 WILD-TYPE" "OR2L8 WILD-TYPE" "OR2L8 WILD-TYPE" 
     TCGA-44-2656      TCGA-44-2657      TCGA-44-2659      TCGA-44-2661 
"OR2L8 WILD-TYPE" "OR2L8 WILD-TYPE" "OR2L8 WILD-TYPE" "OR2L8 WILD-TYPE" 
     TCGA-44-2662      TCGA-44-2665      TCGA-44-2666      TCGA-44-2668 
  "OR2L8 MUTATED" "OR2L8 WILD-TYPE" "OR2L8 WILD-TYPE" "OR2L8 WILD-TYPE" 
     TCGA-44-3396      TCGA-44-3398      TCGA-44-3918      TCGA-44-3919 
"OR2L8 WILD-TYPE" "OR2L8 WILD-TYPE"   "OR2L8 MUTATED" "OR2L8 WILD-TYPE" 
     TCGA-44-4112      TCGA-44-5643      TCGA-44-5645      TCGA-44-6144 
"OR2L8 WILD-TYPE" "OR2L8 WILD-TYPE" "OR2L8 WILD-TYPE" "OR2L8 WILD-TYPE" 
     TCGA-44-6145      TCGA-44-6146      TCGA-44-6147      TCGA-44-6148 
"OR2L8 WILD-TYPE" "OR2L8 WILD-TYPE" "OR2L8 WILD-TYPE" "OR2L8 WILD-TYPE" 
     TCGA-44-6774      TCGA-44-6775      TCGA-44-6776      TCGA-44-6777 
"OR2L8 WILD-TYPE" "OR2L8 WILD-TYPE" "OR2L8 WILD-TYPE" "OR2L8 WILD-TYPE" 
     TCGA-44-6778      TCGA-44-6779      TCGA-49-4486      TCGA-49-4487 
"OR2L8 WILD-TYPE" "OR2L8 WILD-TYPE" "OR2L8 WILD-TYPE" "OR2L8 WILD-TYPE" 
     TCGA-49-4488      TCGA-49-4490      TCGA-49-4494      TCGA-49-4501 
  "OR2L8 MUTATED" "OR2L8 WILD-TYPE" "OR2L8 WILD-TYPE" "OR2L8 WILD-TYPE" 
     TCGA-49-4505      TCGA-49-4506      TCGA-49-4507      TCGA-49-4510 
"OR2L8 WILD-TYPE" "OR2L8 WILD-TYPE" "OR2L8 WILD-TYPE" "OR2L8 WILD-TYPE" 
     TCGA-49-4512      TCGA-49-4514      TCGA-49-6742      TCGA-49-6743 
"OR2L8 WILD-TYPE" "OR2L8 WILD-TYPE" "OR2L8 WILD-TYPE" "OR2L8 WILD-TYPE" 
     TCGA-49-6744      TCGA-49-6745      TCGA-50-5044      TCGA-50-5045 
"OR2L8 WILD-TYPE" "OR2L8 WILD-TYPE" "OR2L8 WILD-TYPE" "OR2L8 WILD-TYPE" 
     TCGA-50-5049      TCGA-50-5051      TCGA-50-5055      TCGA-50-5066 
"OR2L8 WILD-TYPE" "OR2L8 WILD-TYPE" "OR2L8 WILD-TYPE"   "OR2L8 MUTATED" 
     TCGA-50-5068      TCGA-50-5072      TCGA-50-5930      TCGA-50-5931 
"OR2L8 WILD-TYPE" "OR2L8 WILD-TYPE" "OR2L8 WILD-TYPE" "OR2L8 WILD-TYPE" 
     TCGA-50-5932      TCGA-50-5933      TCGA-50-5935      TCGA-50-5936 
"OR2L8 WILD-TYPE" "OR2L8 WILD-TYPE" "OR2L8 WILD-TYPE" "OR2L8 WILD-TYPE" 
     TCGA-50-5939      TCGA-50-5941      TCGA-50-5942      TCGA-50-5944 
"OR2L8 WILD-TYPE" "OR2L8 WILD-TYPE" "OR2L8 WILD-TYPE" "OR2L8 WILD-TYPE" 
     TCGA-50-5946      TCGA-50-6590      TCGA-50-6591      TCGA-50-6592 
"OR2L8 WILD-TYPE" "OR2L8 WILD-TYPE" "OR2L8 WILD-TYPE" "OR2L8 WILD-TYPE" 
     TCGA-50-6593      TCGA-50-6594      TCGA-50-6595      TCGA-50-6597 
"OR2L8 WILD-TYPE" "OR2L8 WILD-TYPE" "OR2L8 WILD-TYPE" "OR2L8 WILD-TYPE" 
     TCGA-55-1592      TCGA-55-1594      TCGA-55-1595      TCGA-55-1596 
"OR2L8 WILD-TYPE" "OR2L8 WILD-TYPE" "OR2L8 WILD-TYPE"   "OR2L8 MUTATED" 
     TCGA-55-5899      TCGA-55-6543      TCGA-55-6642      TCGA-55-6712 
"OR2L8 WILD-TYPE" "OR2L8 WILD-TYPE" "OR2L8 WILD-TYPE" "OR2L8 WILD-TYPE" 
     TCGA-64-1676      TCGA-64-1677      TCGA-64-1678      TCGA-64-1680 
  "OR2L8 MUTATED" "OR2L8 WILD-TYPE" "OR2L8 WILD-TYPE" "OR2L8 WILD-TYPE" 
     TCGA-64-5774      TCGA-64-5775      TCGA-64-5778      TCGA-64-5779 
"OR2L8 WILD-TYPE" "OR2L8 WILD-TYPE" "OR2L8 WILD-TYPE" "OR2L8 WILD-TYPE" 
     TCGA-64-5781      TCGA-64-5815      TCGA-67-3770      TCGA-67-3771 
"OR2L8 WILD-TYPE" "OR2L8 WILD-TYPE" "OR2L8 WILD-TYPE" "OR2L8 WILD-TYPE" 
     TCGA-67-3772      TCGA-67-3773      TCGA-67-3774      TCGA-67-6215 
"OR2L8 WILD-TYPE" "OR2L8 WILD-TYPE" "OR2L8 WILD-TYPE" "OR2L8 WILD-TYPE" 
     TCGA-67-6216      TCGA-67-6217      TCGA-71-6725      TCGA-73-4658 
"OR2L8 WILD-TYPE" "OR2L8 WILD-TYPE" "OR2L8 WILD-TYPE" "OR2L8 WILD-TYPE" 
     TCGA-73-4659      TCGA-73-4662      TCGA-73-4666      TCGA-73-4668 
"OR2L8 WILD-TYPE" "OR2L8 WILD-TYPE" "OR2L8 WILD-TYPE" "OR2L8 WILD-TYPE" 
     TCGA-73-4670      TCGA-73-4675      TCGA-73-4676      TCGA-73-4677 
"OR2L8 WILD-TYPE" "OR2L8 WILD-TYPE" "OR2L8 WILD-TYPE" "OR2L8 WILD-TYPE" 
     TCGA-91-6828      TCGA-91-6829      TCGA-91-6831      TCGA-91-6835 
"OR2L8 WILD-TYPE" "OR2L8 WILD-TYPE" "OR2L8 WILD-TYPE" "OR2L8 WILD-TYPE" 
     TCGA-91-6836 
"OR2L8 WILD-TYPE" 
     TCGA-05-4249      TCGA-05-4250      TCGA-05-4382      TCGA-05-4384 
"OR2L8 WILD-TYPE" "OR2L8 WILD-TYPE"   "OR2L8 MUTATED" "OR2L8 WILD-TYPE" 
     TCGA-05-4390      TCGA-05-4396      TCGA-05-4397      TCGA-05-4398 
"OR2L8 WILD-TYPE"   "OR2L8 MUTATED" "OR2L8 WILD-TYPE" "OR2L8 WILD-TYPE" 
     TCGA-05-4402      TCGA-05-4405      TCGA-05-4415      TCGA-05-4417 
"OR2L8 WILD-TYPE" "OR2L8 WILD-TYPE" "OR2L8 WILD-TYPE" "OR2L8 WILD-TYPE" 
     TCGA-05-4418      TCGA-05-4420      TCGA-05-4424      TCGA-05-4426 
"OR2L8 WILD-TYPE" "OR2L8 WILD-TYPE" "OR2L8 WILD-TYPE" "OR2L8 WILD-TYPE" 
     TCGA-05-4427      TCGA-05-4430      TCGA-05-4432      TCGA-05-4433 
  "OR2L8 MUTATED" "OR2L8 WILD-TYPE" "OR2L8 WILD-TYPE" "OR2L8 WILD-TYPE" 
     TCGA-05-4434      TCGA-05-5420      TCGA-05-5423      TCGA-05-5425 
"OR2L8 WILD-TYPE" "OR2L8 WILD-TYPE" "OR2L8 WILD-TYPE" "OR2L8 WILD-TYPE" 
     TCGA-05-5429      TCGA-05-5715      TCGA-35-3615      TCGA-35-4122 
"OR2L8 WILD-TYPE" "OR2L8 WILD-TYPE" "OR2L8 WILD-TYPE" "OR2L8 WILD-TYPE" 
     TCGA-35-4123      TCGA-35-5375      TCGA-38-4625      TCGA-38-4626 
  "OR2L8 MUTATED" "OR2L8 WILD-TYPE" "OR2L8 WILD-TYPE"   "OR2L8 MUTATED" 
     TCGA-38-4627      TCGA-38-4628      TCGA-38-4629      TCGA-38-4630 
"OR2L8 WILD-TYPE" "OR2L8 WILD-TYPE"   "OR2L8 MUTATED" "OR2L8 WILD-TYPE" 
     TCGA-38-4631      TCGA-38-4632      TCGA-38-6178      TCGA-44-2655 
"OR2L8 WILD-TYPE" "OR2L8 WILD-TYPE" "OR2L8 WILD-TYPE" "OR2L8 WILD-TYPE" 
     TCGA-44-2656      TCGA-44-2657      TCGA-44-2659      TCGA-44-2661 
"OR2L8 WILD-TYPE" "OR2L8 WILD-TYPE" "OR2L8 WILD-TYPE" "OR2L8 WILD-TYPE" 
     TCGA-44-2662      TCGA-44-2665      TCGA-44-2666      TCGA-44-2668 
  "OR2L8 MUTATED" "OR2L8 WILD-TYPE" "OR2L8 WILD-TYPE" "OR2L8 WILD-TYPE" 
     TCGA-44-3396      TCGA-44-3398      TCGA-44-3918      TCGA-44-3919 
"OR2L8 WILD-TYPE" "OR2L8 WILD-TYPE"   "OR2L8 MUTATED" "OR2L8 WILD-TYPE" 
     TCGA-44-4112      TCGA-44-5643      TCGA-44-5645      TCGA-44-6144 
"OR2L8 WILD-TYPE" "OR2L8 WILD-TYPE" "OR2L8 WILD-TYPE" "OR2L8 WILD-TYPE" 
     TCGA-44-6145      TCGA-44-6146      TCGA-44-6147      TCGA-44-6148 
"OR2L8 WILD-TYPE" "OR2L8 WILD-TYPE" "OR2L8 WILD-TYPE" "OR2L8 WILD-TYPE" 
     TCGA-44-6774      TCGA-44-6775      TCGA-44-6776      TCGA-44-6777 
"OR2L8 WILD-TYPE" "OR2L8 WILD-TYPE" "OR2L8 WILD-TYPE" "OR2L8 WILD-TYPE" 
     TCGA-44-6778      TCGA-44-6779      TCGA-49-4486      TCGA-49-4487 
"OR2L8 WILD-TYPE" "OR2L8 WILD-TYPE" "OR2L8 WILD-TYPE" "OR2L8 WILD-TYPE" 
     TCGA-49-4488      TCGA-49-4490      TCGA-49-4494      TCGA-49-4501 
  "OR2L8 MUTATED" "OR2L8 WILD-TYPE" "OR2L8 WILD-TYPE" "OR2L8 WILD-TYPE" 
     TCGA-49-4505      TCGA-49-4506      TCGA-49-4507      TCGA-49-4510 
"OR2L8 WILD-TYPE" "OR2L8 WILD-TYPE" "OR2L8 WILD-TYPE" "OR2L8 WILD-TYPE" 
     TCGA-49-4512      TCGA-49-4514      TCGA-49-6742      TCGA-49-6743 
"OR2L8 WILD-TYPE" "OR2L8 WILD-TYPE" "OR2L8 WILD-TYPE" "OR2L8 WILD-TYPE" 
     TCGA-49-6744      TCGA-49-6745      TCGA-50-5044      TCGA-50-5045 
"OR2L8 WILD-TYPE" "OR2L8 WILD-TYPE" "OR2L8 WILD-TYPE" "OR2L8 WILD-TYPE" 
     TCGA-50-5049      TCGA-50-5051      TCGA-50-5055      TCGA-50-5066 
"OR2L8 WILD-TYPE" "OR2L8 WILD-TYPE" "OR2L8 WILD-TYPE"   "OR2L8 MUTATED" 
     TCGA-50-5068      TCGA-50-5072      TCGA-50-5930      TCGA-50-5931 
"OR2L8 WILD-TYPE" "OR2L8 WILD-TYPE" "OR2L8 WILD-TYPE" "OR2L8 WILD-TYPE" 
     TCGA-50-5932      TCGA-50-5933      TCGA-50-5935      TCGA-50-5936 
"OR2L8 WILD-TYPE" "OR2L8 WILD-TYPE" "OR2L8 WILD-TYPE" "OR2L8 WILD-TYPE" 
     TCGA-50-5939      TCGA-50-5941      TCGA-50-5942      TCGA-50-5944 
"OR2L8 WILD-TYPE" "OR2L8 WILD-TYPE" "OR2L8 WILD-TYPE" "OR2L8 WILD-TYPE" 
     TCGA-50-5946      TCGA-50-6590      TCGA-50-6591      TCGA-50-6592 
"OR2L8 WILD-TYPE" "OR2L8 WILD-TYPE" "OR2L8 WILD-TYPE" "OR2L8 WILD-TYPE" 
     TCGA-50-6593      TCGA-50-6594      TCGA-50-6595      TCGA-50-6597 
"OR2L8 WILD-TYPE" "OR2L8 WILD-TYPE" "OR2L8 WILD-TYPE" "OR2L8 WILD-TYPE" 
     TCGA-55-1592      TCGA-55-1594      TCGA-55-1595      TCGA-55-1596 
"OR2L8 WILD-TYPE" "OR2L8 WILD-TYPE" "OR2L8 WILD-TYPE"   "OR2L8 MUTATED" 
     TCGA-55-5899      TCGA-55-6543      TCGA-55-6642      TCGA-55-6712 
"OR2L8 WILD-TYPE" "OR2L8 WILD-TYPE" "OR2L8 WILD-TYPE" "OR2L8 WILD-TYPE" 
     TCGA-64-1676      TCGA-64-1677      TCGA-64-1678      TCGA-64-1680 
  "OR2L8 MUTATED" "OR2L8 WILD-TYPE" "OR2L8 WILD-TYPE" "OR2L8 WILD-TYPE" 
     TCGA-64-5774      TCGA-64-5775      TCGA-64-5778      TCGA-64-5779 
"OR2L8 WILD-TYPE" "OR2L8 WILD-TYPE" "OR2L8 WILD-TYPE" "OR2L8 WILD-TYPE" 
     TCGA-64-5781      TCGA-64-5815      TCGA-67-3770      TCGA-67-3771 
"OR2L8 WILD-TYPE" "OR2L8 WILD-TYPE" "OR2L8 WILD-TYPE" "OR2L8 WILD-TYPE" 
     TCGA-67-3772      TCGA-67-3773      TCGA-67-3774      TCGA-67-6215 
"OR2L8 WILD-TYPE" "OR2L8 WILD-TYPE" "OR2L8 WILD-TYPE" "OR2L8 WILD-TYPE" 
     TCGA-67-6216      TCGA-67-6217      TCGA-71-6725      TCGA-73-4658 
"OR2L8 WILD-TYPE" "OR2L8 WILD-TYPE" "OR2L8 WILD-TYPE" "OR2L8 WILD-TYPE" 
     TCGA-73-4659      TCGA-73-4662      TCGA-73-4666      TCGA-73-4668 
"OR2L8 WILD-TYPE" "OR2L8 WILD-TYPE" "OR2L8 WILD-TYPE" "OR2L8 WILD-TYPE" 
     TCGA-73-4670      TCGA-73-4675      TCGA-73-4676      TCGA-73-4677 
"OR2L8 WILD-TYPE" "OR2L8 WILD-TYPE" "OR2L8 WILD-TYPE" "OR2L8 WILD-TYPE" 
     TCGA-91-6828      TCGA-91-6829      TCGA-91-6831      TCGA-91-6835 
"OR2L8 WILD-TYPE" "OR2L8 WILD-TYPE" "OR2L8 WILD-TYPE" "OR2L8 WILD-TYPE" 
     TCGA-91-6836 
"OR2L8 WILD-TYPE" 
[1] "hr=" "2.2"
D30V2, continuous
D30V3, binary
[1] "tbl2"
                 cls
clus              [,1] [,2]
  OR2L8 MUTATED      4    8
  OR2L8 WILD-TYPE   89   71
        clus
vv       OR2L8 MUTATED OR2L8 WILD-TYPE
  FEMALE             4              89
  MALE               8              71
D30V4, continuous
[1] "Remove cluster labels:" "OR2L8 MUTATED"         
clus
  OR2L8 MUTATED OR2L8 WILD-TYPE 
              1              11 
     TCGA-35-4122      TCGA-35-5375      TCGA-64-1677      TCGA-64-5778 
"OR2L8 WILD-TYPE" "OR2L8 WILD-TYPE" "OR2L8 WILD-TYPE" "OR2L8 WILD-TYPE" 
     TCGA-71-6725      TCGA-73-4659      TCGA-73-4662      TCGA-73-4666 
"OR2L8 WILD-TYPE" "OR2L8 WILD-TYPE" "OR2L8 WILD-TYPE" "OR2L8 WILD-TYPE" 
     TCGA-73-4668      TCGA-73-4676      TCGA-75-5122 
"OR2L8 WILD-TYPE" "OR2L8 WILD-TYPE" "OR2L8 WILD-TYPE" 
D30V5, multiclass
D30V6, multiclass
    clus
vv   OR2L8 MUTATED OR2L8 WILD-TYPE
  T1             4              37
  T2             6             102
  T3             1              13
  T4             1               7
D30V7, multiclass
       clus
vv      OR2L8 MUTATED OR2L8 WILD-TYPE
  N0                9              86
  N1                3              34
  N2+N3             0              35
D30V8, multiclass
    clus
vv   OR2L8 MUTATED OR2L8 WILD-TYPE
  M0            11             126
  M1             0               9
  MX             1              21
D30V9, multiclass
     clus
vv    OR2L8 MUTATED OR2L8 WILD-TYPE
  I               7              81
  II              4              29
  III             1              38
  IV              0               9
D30V10, binary
[1] "tbl2"
                 cls
clus              [,1] [,2]
  OR2L8 MUTATED      0   12
  OR2L8 WILD-TYPE   16  144
     clus
vv    OR2L8 MUTATED OR2L8 WILD-TYPE
  NO              0              16
  YES            12             144
D30V11, continuous
D30V12, continuous
D30V13, multiclass
                                             clus
vv                                            OR2L8 MUTATED OR2L8 WILD-TYPE
  CURRENT REFORMED SMOKER FOR < OR = 15 YEARS             4              58
  CURRENT REFORMED SMOKER FOR > 15 YEARS                  4              42
  CURRENT SMOKER                                          3              25
  LIFELONG NON-SMOKER                                     1              23
D30V14, continuous

Clustering(31) Variable = TBX22 MUTATION ANALYSIS
D31V1, survival
                 sevent
clus2              0  1
  TBX22 MUTATED    7  4
  TBX22 WILD-TYPE 92 46
  TBX22 MUTATED TBX22 WILD-TYPE 
             11             138 
  TBX22 MUTATED TBX22 WILD-TYPE 
              4              46 
$`TBX22 MUTATED`
TCGA-05-4382 TCGA-05-4396 TCGA-38-4628 TCGA-44-2656 TCGA-49-4514 TCGA-49-6743 
       19.92         9.96        49.02        19.10        43.20        12.13 
TCGA-50-5066 TCGA-50-6593 TCGA-64-5775 TCGA-64-5778 TCGA-64-5781 
        9.76        11.05         0.10        30.44        39.52 

$`TBX22 WILD-TYPE`
TCGA-05-4249 TCGA-05-4250 TCGA-05-4384 TCGA-05-4390 TCGA-05-4397 TCGA-05-4398 
       38.07         3.98        14.01        37.02        24.03        47.05 
TCGA-05-4402 TCGA-05-4405 TCGA-05-4415 TCGA-05-4417 TCGA-05-4418 TCGA-05-4420 
        8.02        20.05         2.96        14.93         8.98        29.95 
TCGA-05-4424 TCGA-05-4426 TCGA-05-4427 TCGA-05-4430 TCGA-05-4432 TCGA-05-4433 
       30.02        26.01        26.01        25.02        25.02        24.00 
TCGA-05-4434 TCGA-05-5420 TCGA-05-5423 TCGA-05-5425 TCGA-05-5429 TCGA-05-5715 
       15.02         1.02         4.96         2.96         0.99         2.04 
TCGA-35-3615 TCGA-35-4122 TCGA-35-4123 TCGA-35-5375 TCGA-38-4625 TCGA-38-4626 
        0.46         7.36         5.95         8.68        47.61        85.32 
TCGA-38-4627 TCGA-38-4629 TCGA-38-4630 TCGA-38-4631 TCGA-38-4632 TCGA-38-6178 
       37.71        28.37        35.28        11.64        44.61         5.19 
TCGA-44-2655 TCGA-44-2657 TCGA-44-2659 TCGA-44-2661 TCGA-44-2662 TCGA-44-2665 
       18.87        13.15        17.39         3.39        15.78        13.15 
TCGA-44-2666 TCGA-44-2668 TCGA-44-3396 TCGA-44-3398 TCGA-44-3918 TCGA-44-3919 
        3.19         8.09        10.22         8.32         6.44         6.21 
TCGA-44-4112 TCGA-44-5643 TCGA-44-5645 TCGA-44-6144 TCGA-44-6145 TCGA-44-6146 
        4.60         3.48         6.84         0.30         3.35         9.93 
TCGA-44-6147 TCGA-44-6148 TCGA-44-6774 TCGA-44-6775 TCGA-44-6776 TCGA-44-6777 
        7.76         3.12         5.42         2.70        63.72        32.45 
TCGA-44-6778 TCGA-44-6779 TCGA-49-4486 TCGA-49-4487 TCGA-49-4488 TCGA-49-4490 
       36.49        16.41        76.21        28.11        28.57        12.66 
TCGA-49-4494 TCGA-49-4501 TCGA-49-4505 TCGA-49-4506 TCGA-49-4507 TCGA-49-4510 
       35.54        46.72        14.07        32.84         8.81        29.46 
TCGA-49-4512 TCGA-49-6742 TCGA-49-6744 TCGA-49-6745 TCGA-50-5044 TCGA-50-5045 
       29.75        15.02        12.99         4.93        20.48        71.47 
TCGA-50-5049 TCGA-50-5051 TCGA-50-5055 TCGA-50-5068 TCGA-50-5072 TCGA-50-5930 
       48.82        14.96        25.81        49.28         8.05         9.27 
TCGA-50-5931 TCGA-50-5932 TCGA-50-5933 TCGA-50-5935 TCGA-50-5936 TCGA-50-5939 
        8.78        35.87        77.88        21.47         8.45        15.12 
TCGA-50-5941 TCGA-50-5942 TCGA-50-5944 TCGA-50-5946 TCGA-50-6590 TCGA-50-6591 
        9.37         4.44        12.26        11.47        42.31         3.88 
TCGA-50-6592 TCGA-50-6594 TCGA-50-6595 TCGA-50-6597 TCGA-55-1592 TCGA-55-1594 
       25.51        12.16         6.21        33.37        23.05        38.73 
TCGA-55-1595 TCGA-55-1596 TCGA-55-5899 TCGA-55-6543 TCGA-55-6642 TCGA-55-6712 
       48.62        45.17         2.86         0.07        32.61         0.79 
TCGA-64-1676 TCGA-64-1677 TCGA-64-1678 TCGA-64-1680 TCGA-64-5774 TCGA-64-5779 
       56.81        20.65        39.09        37.02        83.84        16.67 
TCGA-64-5815 TCGA-67-3770 TCGA-67-3771 TCGA-67-3772 TCGA-67-3773 TCGA-67-3774 
        7.33         0.99         1.97         0.59         2.04         0.59 
TCGA-67-6215 TCGA-67-6216 TCGA-67-6217 TCGA-71-6725 TCGA-73-4658 TCGA-73-4659 
        0.89         0.69        13.87         2.01        52.57        23.38 
TCGA-73-4662 TCGA-73-4666 TCGA-73-4668 TCGA-73-4670 TCGA-73-4675 TCGA-73-4676 
       29.95        20.28        15.35         0.46         1.32         4.01 
TCGA-73-4677 TCGA-91-6828 TCGA-91-6829 TCGA-91-6831 TCGA-91-6835 TCGA-91-6836 
        1.25         1.22        41.33         1.28         1.15         0.36 

  TBX22 MUTATED TBX22 WILD-TYPE 
           0.10            0.07 
  TBX22 MUTATED TBX22 WILD-TYPE 
          49.02           85.32 
  TBX22 MUTATED TBX22 WILD-TYPE 
          19.10           13.51 
[1] "0.1 - 49.0 (19.1)" "0.1 - 85.3 (13.5)"
     TCGA-05-4249      TCGA-05-4250      TCGA-05-4382      TCGA-05-4384 
"TBX22 WILD-TYPE" "TBX22 WILD-TYPE"   "TBX22 MUTATED" "TBX22 WILD-TYPE" 
     TCGA-05-4390      TCGA-05-4396      TCGA-05-4397      TCGA-05-4398 
"TBX22 WILD-TYPE"   "TBX22 MUTATED" "TBX22 WILD-TYPE" "TBX22 WILD-TYPE" 
     TCGA-05-4402      TCGA-05-4405      TCGA-05-4415      TCGA-05-4417 
"TBX22 WILD-TYPE" "TBX22 WILD-TYPE" "TBX22 WILD-TYPE" "TBX22 WILD-TYPE" 
     TCGA-05-4418      TCGA-05-4420      TCGA-05-4424      TCGA-05-4426 
"TBX22 WILD-TYPE" "TBX22 WILD-TYPE" "TBX22 WILD-TYPE" "TBX22 WILD-TYPE" 
     TCGA-05-4427      TCGA-05-4430      TCGA-05-4432      TCGA-05-4433 
"TBX22 WILD-TYPE" "TBX22 WILD-TYPE" "TBX22 WILD-TYPE" "TBX22 WILD-TYPE" 
     TCGA-05-4434      TCGA-05-5420      TCGA-05-5423      TCGA-05-5425 
"TBX22 WILD-TYPE" "TBX22 WILD-TYPE" "TBX22 WILD-TYPE" "TBX22 WILD-TYPE" 
     TCGA-05-5429      TCGA-05-5715      TCGA-35-3615      TCGA-35-4122 
"TBX22 WILD-TYPE" "TBX22 WILD-TYPE" "TBX22 WILD-TYPE" "TBX22 WILD-TYPE" 
     TCGA-35-4123      TCGA-35-5375      TCGA-38-4625      TCGA-38-4626 
"TBX22 WILD-TYPE" "TBX22 WILD-TYPE" "TBX22 WILD-TYPE" "TBX22 WILD-TYPE" 
     TCGA-38-4627      TCGA-38-4628      TCGA-38-4629      TCGA-38-4630 
"TBX22 WILD-TYPE"   "TBX22 MUTATED" "TBX22 WILD-TYPE" "TBX22 WILD-TYPE" 
     TCGA-38-4631      TCGA-38-4632      TCGA-38-6178      TCGA-44-2655 
"TBX22 WILD-TYPE" "TBX22 WILD-TYPE" "TBX22 WILD-TYPE" "TBX22 WILD-TYPE" 
     TCGA-44-2656      TCGA-44-2657      TCGA-44-2659      TCGA-44-2661 
  "TBX22 MUTATED" "TBX22 WILD-TYPE" "TBX22 WILD-TYPE" "TBX22 WILD-TYPE" 
     TCGA-44-2662      TCGA-44-2665      TCGA-44-2666      TCGA-44-2668 
"TBX22 WILD-TYPE" "TBX22 WILD-TYPE" "TBX22 WILD-TYPE" "TBX22 WILD-TYPE" 
     TCGA-44-3396      TCGA-44-3398      TCGA-44-3918      TCGA-44-3919 
"TBX22 WILD-TYPE" "TBX22 WILD-TYPE" "TBX22 WILD-TYPE" "TBX22 WILD-TYPE" 
     TCGA-44-4112      TCGA-44-5643      TCGA-44-5645      TCGA-44-6144 
"TBX22 WILD-TYPE" "TBX22 WILD-TYPE" "TBX22 WILD-TYPE" "TBX22 WILD-TYPE" 
     TCGA-44-6145      TCGA-44-6146      TCGA-44-6147      TCGA-44-6148 
"TBX22 WILD-TYPE" "TBX22 WILD-TYPE" "TBX22 WILD-TYPE" "TBX22 WILD-TYPE" 
     TCGA-44-6774      TCGA-44-6775      TCGA-44-6776      TCGA-44-6777 
"TBX22 WILD-TYPE" "TBX22 WILD-TYPE" "TBX22 WILD-TYPE" "TBX22 WILD-TYPE" 
     TCGA-44-6778      TCGA-44-6779      TCGA-49-4486      TCGA-49-4487 
"TBX22 WILD-TYPE" "TBX22 WILD-TYPE" "TBX22 WILD-TYPE" "TBX22 WILD-TYPE" 
     TCGA-49-4488      TCGA-49-4490      TCGA-49-4494      TCGA-49-4501 
"TBX22 WILD-TYPE" "TBX22 WILD-TYPE" "TBX22 WILD-TYPE" "TBX22 WILD-TYPE" 
     TCGA-49-4505      TCGA-49-4506      TCGA-49-4507      TCGA-49-4510 
"TBX22 WILD-TYPE" "TBX22 WILD-TYPE" "TBX22 WILD-TYPE" "TBX22 WILD-TYPE" 
     TCGA-49-4512      TCGA-49-4514      TCGA-49-6742      TCGA-49-6743 
"TBX22 WILD-TYPE"   "TBX22 MUTATED" "TBX22 WILD-TYPE"   "TBX22 MUTATED" 
     TCGA-49-6744      TCGA-49-6745      TCGA-50-5044      TCGA-50-5045 
"TBX22 WILD-TYPE" "TBX22 WILD-TYPE" "TBX22 WILD-TYPE" "TBX22 WILD-TYPE" 
     TCGA-50-5049      TCGA-50-5051      TCGA-50-5055      TCGA-50-5066 
"TBX22 WILD-TYPE" "TBX22 WILD-TYPE" "TBX22 WILD-TYPE"   "TBX22 MUTATED" 
     TCGA-50-5068      TCGA-50-5072      TCGA-50-5930      TCGA-50-5931 
"TBX22 WILD-TYPE" "TBX22 WILD-TYPE" "TBX22 WILD-TYPE" "TBX22 WILD-TYPE" 
     TCGA-50-5932      TCGA-50-5933      TCGA-50-5935      TCGA-50-5936 
"TBX22 WILD-TYPE" "TBX22 WILD-TYPE" "TBX22 WILD-TYPE" "TBX22 WILD-TYPE" 
     TCGA-50-5939      TCGA-50-5941      TCGA-50-5942      TCGA-50-5944 
"TBX22 WILD-TYPE" "TBX22 WILD-TYPE" "TBX22 WILD-TYPE" "TBX22 WILD-TYPE" 
     TCGA-50-5946      TCGA-50-6590      TCGA-50-6591      TCGA-50-6592 
"TBX22 WILD-TYPE" "TBX22 WILD-TYPE" "TBX22 WILD-TYPE" "TBX22 WILD-TYPE" 
     TCGA-50-6593      TCGA-50-6594      TCGA-50-6595      TCGA-50-6597 
  "TBX22 MUTATED" "TBX22 WILD-TYPE" "TBX22 WILD-TYPE" "TBX22 WILD-TYPE" 
     TCGA-55-1592      TCGA-55-1594      TCGA-55-1595      TCGA-55-1596 
"TBX22 WILD-TYPE" "TBX22 WILD-TYPE" "TBX22 WILD-TYPE" "TBX22 WILD-TYPE" 
     TCGA-55-5899      TCGA-55-6543      TCGA-55-6642      TCGA-55-6712 
"TBX22 WILD-TYPE" "TBX22 WILD-TYPE" "TBX22 WILD-TYPE" "TBX22 WILD-TYPE" 
     TCGA-64-1676      TCGA-64-1677      TCGA-64-1678      TCGA-64-1680 
"TBX22 WILD-TYPE" "TBX22 WILD-TYPE" "TBX22 WILD-TYPE" "TBX22 WILD-TYPE" 
     TCGA-64-5774      TCGA-64-5775      TCGA-64-5778      TCGA-64-5779 
"TBX22 WILD-TYPE"   "TBX22 MUTATED"   "TBX22 MUTATED" "TBX22 WILD-TYPE" 
     TCGA-64-5781      TCGA-64-5815      TCGA-67-3770      TCGA-67-3771 
  "TBX22 MUTATED" "TBX22 WILD-TYPE" "TBX22 WILD-TYPE" "TBX22 WILD-TYPE" 
     TCGA-67-3772      TCGA-67-3773      TCGA-67-3774      TCGA-67-6215 
"TBX22 WILD-TYPE" "TBX22 WILD-TYPE" "TBX22 WILD-TYPE" "TBX22 WILD-TYPE" 
     TCGA-67-6216      TCGA-67-6217      TCGA-71-6725      TCGA-73-4658 
"TBX22 WILD-TYPE" "TBX22 WILD-TYPE" "TBX22 WILD-TYPE" "TBX22 WILD-TYPE" 
     TCGA-73-4659      TCGA-73-4662      TCGA-73-4666      TCGA-73-4668 
"TBX22 WILD-TYPE" "TBX22 WILD-TYPE" "TBX22 WILD-TYPE" "TBX22 WILD-TYPE" 
     TCGA-73-4670      TCGA-73-4675      TCGA-73-4676      TCGA-73-4677 
"TBX22 WILD-TYPE" "TBX22 WILD-TYPE" "TBX22 WILD-TYPE" "TBX22 WILD-TYPE" 
     TCGA-91-6828      TCGA-91-6829      TCGA-91-6831      TCGA-91-6835 
"TBX22 WILD-TYPE" "TBX22 WILD-TYPE" "TBX22 WILD-TYPE" "TBX22 WILD-TYPE" 
     TCGA-91-6836 
"TBX22 WILD-TYPE" 
     TCGA-05-4249      TCGA-05-4250      TCGA-05-4382      TCGA-05-4384 
"TBX22 WILD-TYPE" "TBX22 WILD-TYPE"   "TBX22 MUTATED" "TBX22 WILD-TYPE" 
     TCGA-05-4390      TCGA-05-4396      TCGA-05-4397      TCGA-05-4398 
"TBX22 WILD-TYPE"   "TBX22 MUTATED" "TBX22 WILD-TYPE" "TBX22 WILD-TYPE" 
     TCGA-05-4402      TCGA-05-4405      TCGA-05-4415      TCGA-05-4417 
"TBX22 WILD-TYPE" "TBX22 WILD-TYPE" "TBX22 WILD-TYPE" "TBX22 WILD-TYPE" 
     TCGA-05-4418      TCGA-05-4420      TCGA-05-4424      TCGA-05-4426 
"TBX22 WILD-TYPE" "TBX22 WILD-TYPE" "TBX22 WILD-TYPE" "TBX22 WILD-TYPE" 
     TCGA-05-4427      TCGA-05-4430      TCGA-05-4432      TCGA-05-4433 
"TBX22 WILD-TYPE" "TBX22 WILD-TYPE" "TBX22 WILD-TYPE" "TBX22 WILD-TYPE" 
     TCGA-05-4434      TCGA-05-5420      TCGA-05-5423      TCGA-05-5425 
"TBX22 WILD-TYPE" "TBX22 WILD-TYPE" "TBX22 WILD-TYPE" "TBX22 WILD-TYPE" 
     TCGA-05-5429      TCGA-05-5715      TCGA-35-3615      TCGA-35-4122 
"TBX22 WILD-TYPE" "TBX22 WILD-TYPE" "TBX22 WILD-TYPE" "TBX22 WILD-TYPE" 
     TCGA-35-4123      TCGA-35-5375      TCGA-38-4625      TCGA-38-4626 
"TBX22 WILD-TYPE" "TBX22 WILD-TYPE" "TBX22 WILD-TYPE" "TBX22 WILD-TYPE" 
     TCGA-38-4627      TCGA-38-4628      TCGA-38-4629      TCGA-38-4630 
"TBX22 WILD-TYPE"   "TBX22 MUTATED" "TBX22 WILD-TYPE" "TBX22 WILD-TYPE" 
     TCGA-38-4631      TCGA-38-4632      TCGA-38-6178      TCGA-44-2655 
"TBX22 WILD-TYPE" "TBX22 WILD-TYPE" "TBX22 WILD-TYPE" "TBX22 WILD-TYPE" 
     TCGA-44-2656      TCGA-44-2657      TCGA-44-2659      TCGA-44-2661 
  "TBX22 MUTATED" "TBX22 WILD-TYPE" "TBX22 WILD-TYPE" "TBX22 WILD-TYPE" 
     TCGA-44-2662      TCGA-44-2665      TCGA-44-2666      TCGA-44-2668 
"TBX22 WILD-TYPE" "TBX22 WILD-TYPE" "TBX22 WILD-TYPE" "TBX22 WILD-TYPE" 
     TCGA-44-3396      TCGA-44-3398      TCGA-44-3918      TCGA-44-3919 
"TBX22 WILD-TYPE" "TBX22 WILD-TYPE" "TBX22 WILD-TYPE" "TBX22 WILD-TYPE" 
     TCGA-44-4112      TCGA-44-5643      TCGA-44-5645      TCGA-44-6144 
"TBX22 WILD-TYPE" "TBX22 WILD-TYPE" "TBX22 WILD-TYPE" "TBX22 WILD-TYPE" 
     TCGA-44-6145      TCGA-44-6146      TCGA-44-6147      TCGA-44-6148 
"TBX22 WILD-TYPE" "TBX22 WILD-TYPE" "TBX22 WILD-TYPE" "TBX22 WILD-TYPE" 
     TCGA-44-6774      TCGA-44-6775      TCGA-44-6776      TCGA-44-6777 
"TBX22 WILD-TYPE" "TBX22 WILD-TYPE" "TBX22 WILD-TYPE" "TBX22 WILD-TYPE" 
     TCGA-44-6778      TCGA-44-6779      TCGA-49-4486      TCGA-49-4487 
"TBX22 WILD-TYPE" "TBX22 WILD-TYPE" "TBX22 WILD-TYPE" "TBX22 WILD-TYPE" 
     TCGA-49-4488      TCGA-49-4490      TCGA-49-4494      TCGA-49-4501 
"TBX22 WILD-TYPE" "TBX22 WILD-TYPE" "TBX22 WILD-TYPE" "TBX22 WILD-TYPE" 
     TCGA-49-4505      TCGA-49-4506      TCGA-49-4507      TCGA-49-4510 
"TBX22 WILD-TYPE" "TBX22 WILD-TYPE" "TBX22 WILD-TYPE" "TBX22 WILD-TYPE" 
     TCGA-49-4512      TCGA-49-4514      TCGA-49-6742      TCGA-49-6743 
"TBX22 WILD-TYPE"   "TBX22 MUTATED" "TBX22 WILD-TYPE"   "TBX22 MUTATED" 
     TCGA-49-6744      TCGA-49-6745      TCGA-50-5044      TCGA-50-5045 
"TBX22 WILD-TYPE" "TBX22 WILD-TYPE" "TBX22 WILD-TYPE" "TBX22 WILD-TYPE" 
     TCGA-50-5049      TCGA-50-5051      TCGA-50-5055      TCGA-50-5066 
"TBX22 WILD-TYPE" "TBX22 WILD-TYPE" "TBX22 WILD-TYPE"   "TBX22 MUTATED" 
     TCGA-50-5068      TCGA-50-5072      TCGA-50-5930      TCGA-50-5931 
"TBX22 WILD-TYPE" "TBX22 WILD-TYPE" "TBX22 WILD-TYPE" "TBX22 WILD-TYPE" 
     TCGA-50-5932      TCGA-50-5933      TCGA-50-5935      TCGA-50-5936 
"TBX22 WILD-TYPE" "TBX22 WILD-TYPE" "TBX22 WILD-TYPE" "TBX22 WILD-TYPE" 
     TCGA-50-5939      TCGA-50-5941      TCGA-50-5942      TCGA-50-5944 
"TBX22 WILD-TYPE" "TBX22 WILD-TYPE" "TBX22 WILD-TYPE" "TBX22 WILD-TYPE" 
     TCGA-50-5946      TCGA-50-6590      TCGA-50-6591      TCGA-50-6592 
"TBX22 WILD-TYPE" "TBX22 WILD-TYPE" "TBX22 WILD-TYPE" "TBX22 WILD-TYPE" 
     TCGA-50-6593      TCGA-50-6594      TCGA-50-6595      TCGA-50-6597 
  "TBX22 MUTATED" "TBX22 WILD-TYPE" "TBX22 WILD-TYPE" "TBX22 WILD-TYPE" 
     TCGA-55-1592      TCGA-55-1594      TCGA-55-1595      TCGA-55-1596 
"TBX22 WILD-TYPE" "TBX22 WILD-TYPE" "TBX22 WILD-TYPE" "TBX22 WILD-TYPE" 
     TCGA-55-5899      TCGA-55-6543      TCGA-55-6642      TCGA-55-6712 
"TBX22 WILD-TYPE" "TBX22 WILD-TYPE" "TBX22 WILD-TYPE" "TBX22 WILD-TYPE" 
     TCGA-64-1676      TCGA-64-1677      TCGA-64-1678      TCGA-64-1680 
"TBX22 WILD-TYPE" "TBX22 WILD-TYPE" "TBX22 WILD-TYPE" "TBX22 WILD-TYPE" 
     TCGA-64-5774      TCGA-64-5775      TCGA-64-5778      TCGA-64-5779 
"TBX22 WILD-TYPE"   "TBX22 MUTATED"   "TBX22 MUTATED" "TBX22 WILD-TYPE" 
     TCGA-64-5781      TCGA-64-5815      TCGA-67-3770      TCGA-67-3771 
  "TBX22 MUTATED" "TBX22 WILD-TYPE" "TBX22 WILD-TYPE" "TBX22 WILD-TYPE" 
     TCGA-67-3772      TCGA-67-3773      TCGA-67-3774      TCGA-67-6215 
"TBX22 WILD-TYPE" "TBX22 WILD-TYPE" "TBX22 WILD-TYPE" "TBX22 WILD-TYPE" 
     TCGA-67-6216      TCGA-67-6217      TCGA-71-6725      TCGA-73-4658 
"TBX22 WILD-TYPE" "TBX22 WILD-TYPE" "TBX22 WILD-TYPE" "TBX22 WILD-TYPE" 
     TCGA-73-4659      TCGA-73-4662      TCGA-73-4666      TCGA-73-4668 
"TBX22 WILD-TYPE" "TBX22 WILD-TYPE" "TBX22 WILD-TYPE" "TBX22 WILD-TYPE" 
     TCGA-73-4670      TCGA-73-4675      TCGA-73-4676      TCGA-73-4677 
"TBX22 WILD-TYPE" "TBX22 WILD-TYPE" "TBX22 WILD-TYPE" "TBX22 WILD-TYPE" 
     TCGA-91-6828      TCGA-91-6829      TCGA-91-6831      TCGA-91-6835 
"TBX22 WILD-TYPE" "TBX22 WILD-TYPE" "TBX22 WILD-TYPE" "TBX22 WILD-TYPE" 
     TCGA-91-6836 
"TBX22 WILD-TYPE" 
     TCGA-05-4249      TCGA-05-4250      TCGA-05-4382      TCGA-05-4384 
"TBX22 WILD-TYPE" "TBX22 WILD-TYPE"   "TBX22 MUTATED" "TBX22 WILD-TYPE" 
     TCGA-05-4390      TCGA-05-4396      TCGA-05-4397      TCGA-05-4398 
"TBX22 WILD-TYPE"   "TBX22 MUTATED" "TBX22 WILD-TYPE" "TBX22 WILD-TYPE" 
     TCGA-05-4402      TCGA-05-4405      TCGA-05-4415      TCGA-05-4417 
"TBX22 WILD-TYPE" "TBX22 WILD-TYPE" "TBX22 WILD-TYPE" "TBX22 WILD-TYPE" 
     TCGA-05-4418      TCGA-05-4420      TCGA-05-4424      TCGA-05-4426 
"TBX22 WILD-TYPE" "TBX22 WILD-TYPE" "TBX22 WILD-TYPE" "TBX22 WILD-TYPE" 
     TCGA-05-4427      TCGA-05-4430      TCGA-05-4432      TCGA-05-4433 
"TBX22 WILD-TYPE" "TBX22 WILD-TYPE" "TBX22 WILD-TYPE" "TBX22 WILD-TYPE" 
     TCGA-05-4434      TCGA-05-5420      TCGA-05-5423      TCGA-05-5425 
"TBX22 WILD-TYPE" "TBX22 WILD-TYPE" "TBX22 WILD-TYPE" "TBX22 WILD-TYPE" 
     TCGA-05-5429      TCGA-05-5715      TCGA-35-3615      TCGA-35-4122 
"TBX22 WILD-TYPE" "TBX22 WILD-TYPE" "TBX22 WILD-TYPE" "TBX22 WILD-TYPE" 
     TCGA-35-4123      TCGA-35-5375      TCGA-38-4625      TCGA-38-4626 
"TBX22 WILD-TYPE" "TBX22 WILD-TYPE" "TBX22 WILD-TYPE" "TBX22 WILD-TYPE" 
     TCGA-38-4627      TCGA-38-4628      TCGA-38-4629      TCGA-38-4630 
"TBX22 WILD-TYPE"   "TBX22 MUTATED" "TBX22 WILD-TYPE" "TBX22 WILD-TYPE" 
     TCGA-38-4631      TCGA-38-4632      TCGA-38-6178      TCGA-44-2655 
"TBX22 WILD-TYPE" "TBX22 WILD-TYPE" "TBX22 WILD-TYPE" "TBX22 WILD-TYPE" 
     TCGA-44-2656      TCGA-44-2657      TCGA-44-2659      TCGA-44-2661 
  "TBX22 MUTATED" "TBX22 WILD-TYPE" "TBX22 WILD-TYPE" "TBX22 WILD-TYPE" 
     TCGA-44-2662      TCGA-44-2665      TCGA-44-2666      TCGA-44-2668 
"TBX22 WILD-TYPE" "TBX22 WILD-TYPE" "TBX22 WILD-TYPE" "TBX22 WILD-TYPE" 
     TCGA-44-3396      TCGA-44-3398      TCGA-44-3918      TCGA-44-3919 
"TBX22 WILD-TYPE" "TBX22 WILD-TYPE" "TBX22 WILD-TYPE" "TBX22 WILD-TYPE" 
     TCGA-44-4112      TCGA-44-5643      TCGA-44-5645      TCGA-44-6144 
"TBX22 WILD-TYPE" "TBX22 WILD-TYPE" "TBX22 WILD-TYPE" "TBX22 WILD-TYPE" 
     TCGA-44-6145      TCGA-44-6146      TCGA-44-6147      TCGA-44-6148 
"TBX22 WILD-TYPE" "TBX22 WILD-TYPE" "TBX22 WILD-TYPE" "TBX22 WILD-TYPE" 
     TCGA-44-6774      TCGA-44-6775      TCGA-44-6776      TCGA-44-6777 
"TBX22 WILD-TYPE" "TBX22 WILD-TYPE" "TBX22 WILD-TYPE" "TBX22 WILD-TYPE" 
     TCGA-44-6778      TCGA-44-6779      TCGA-49-4486      TCGA-49-4487 
"TBX22 WILD-TYPE" "TBX22 WILD-TYPE" "TBX22 WILD-TYPE" "TBX22 WILD-TYPE" 
     TCGA-49-4488      TCGA-49-4490      TCGA-49-4494      TCGA-49-4501 
"TBX22 WILD-TYPE" "TBX22 WILD-TYPE" "TBX22 WILD-TYPE" "TBX22 WILD-TYPE" 
     TCGA-49-4505      TCGA-49-4506      TCGA-49-4507      TCGA-49-4510 
"TBX22 WILD-TYPE" "TBX22 WILD-TYPE" "TBX22 WILD-TYPE" "TBX22 WILD-TYPE" 
     TCGA-49-4512      TCGA-49-4514      TCGA-49-6742      TCGA-49-6743 
"TBX22 WILD-TYPE"   "TBX22 MUTATED" "TBX22 WILD-TYPE"   "TBX22 MUTATED" 
     TCGA-49-6744      TCGA-49-6745      TCGA-50-5044      TCGA-50-5045 
"TBX22 WILD-TYPE" "TBX22 WILD-TYPE" "TBX22 WILD-TYPE" "TBX22 WILD-TYPE" 
     TCGA-50-5049      TCGA-50-5051      TCGA-50-5055      TCGA-50-5066 
"TBX22 WILD-TYPE" "TBX22 WILD-TYPE" "TBX22 WILD-TYPE"   "TBX22 MUTATED" 
     TCGA-50-5068      TCGA-50-5072      TCGA-50-5930      TCGA-50-5931 
"TBX22 WILD-TYPE" "TBX22 WILD-TYPE" "TBX22 WILD-TYPE" "TBX22 WILD-TYPE" 
     TCGA-50-5932      TCGA-50-5933      TCGA-50-5935      TCGA-50-5936 
"TBX22 WILD-TYPE" "TBX22 WILD-TYPE" "TBX22 WILD-TYPE" "TBX22 WILD-TYPE" 
     TCGA-50-5939      TCGA-50-5941      TCGA-50-5942      TCGA-50-5944 
"TBX22 WILD-TYPE" "TBX22 WILD-TYPE" "TBX22 WILD-TYPE" "TBX22 WILD-TYPE" 
     TCGA-50-5946      TCGA-50-6590      TCGA-50-6591      TCGA-50-6592 
"TBX22 WILD-TYPE" "TBX22 WILD-TYPE" "TBX22 WILD-TYPE" "TBX22 WILD-TYPE" 
     TCGA-50-6593      TCGA-50-6594      TCGA-50-6595      TCGA-50-6597 
  "TBX22 MUTATED" "TBX22 WILD-TYPE" "TBX22 WILD-TYPE" "TBX22 WILD-TYPE" 
     TCGA-55-1592      TCGA-55-1594      TCGA-55-1595      TCGA-55-1596 
"TBX22 WILD-TYPE" "TBX22 WILD-TYPE" "TBX22 WILD-TYPE" "TBX22 WILD-TYPE" 
     TCGA-55-5899      TCGA-55-6543      TCGA-55-6642      TCGA-55-6712 
"TBX22 WILD-TYPE" "TBX22 WILD-TYPE" "TBX22 WILD-TYPE" "TBX22 WILD-TYPE" 
     TCGA-64-1676      TCGA-64-1677      TCGA-64-1678      TCGA-64-1680 
"TBX22 WILD-TYPE" "TBX22 WILD-TYPE" "TBX22 WILD-TYPE" "TBX22 WILD-TYPE" 
     TCGA-64-5774      TCGA-64-5775      TCGA-64-5778      TCGA-64-5779 
"TBX22 WILD-TYPE"   "TBX22 MUTATED"   "TBX22 MUTATED" "TBX22 WILD-TYPE" 
     TCGA-64-5781      TCGA-64-5815      TCGA-67-3770      TCGA-67-3771 
  "TBX22 MUTATED" "TBX22 WILD-TYPE" "TBX22 WILD-TYPE" "TBX22 WILD-TYPE" 
     TCGA-67-3772      TCGA-67-3773      TCGA-67-3774      TCGA-67-6215 
"TBX22 WILD-TYPE" "TBX22 WILD-TYPE" "TBX22 WILD-TYPE" "TBX22 WILD-TYPE" 
     TCGA-67-6216      TCGA-67-6217      TCGA-71-6725      TCGA-73-4658 
"TBX22 WILD-TYPE" "TBX22 WILD-TYPE" "TBX22 WILD-TYPE" "TBX22 WILD-TYPE" 
     TCGA-73-4659      TCGA-73-4662      TCGA-73-4666      TCGA-73-4668 
"TBX22 WILD-TYPE" "TBX22 WILD-TYPE" "TBX22 WILD-TYPE" "TBX22 WILD-TYPE" 
     TCGA-73-4670      TCGA-73-4675      TCGA-73-4676      TCGA-73-4677 
"TBX22 WILD-TYPE" "TBX22 WILD-TYPE" "TBX22 WILD-TYPE" "TBX22 WILD-TYPE" 
     TCGA-91-6828      TCGA-91-6829      TCGA-91-6831      TCGA-91-6835 
"TBX22 WILD-TYPE" "TBX22 WILD-TYPE" "TBX22 WILD-TYPE" "TBX22 WILD-TYPE" 
     TCGA-91-6836 
"TBX22 WILD-TYPE" 
[1] "hr=" "1"  
D31V2, continuous
D31V3, binary
[1] "tbl2"
                 cls
clus              [,1] [,2]
  TBX22 MUTATED      5    7
  TBX22 WILD-TYPE   88   72
        clus
vv       TBX22 MUTATED TBX22 WILD-TYPE
  FEMALE             5              88
  MALE               7              72
D31V4, continuous
[1] "Remove cluster labels:" "TBX22 MUTATED"         
clus
  TBX22 MUTATED TBX22 WILD-TYPE 
              1              11 
     TCGA-35-4122      TCGA-35-4123      TCGA-35-5375      TCGA-64-1677 
"TBX22 WILD-TYPE" "TBX22 WILD-TYPE" "TBX22 WILD-TYPE" "TBX22 WILD-TYPE" 
     TCGA-71-6725      TCGA-73-4659      TCGA-73-4662      TCGA-73-4666 
"TBX22 WILD-TYPE" "TBX22 WILD-TYPE" "TBX22 WILD-TYPE" "TBX22 WILD-TYPE" 
     TCGA-73-4668      TCGA-73-4676      TCGA-75-5122 
"TBX22 WILD-TYPE" "TBX22 WILD-TYPE" "TBX22 WILD-TYPE" 
D31V5, multiclass
D31V6, multiclass
    clus
vv   TBX22 MUTATED TBX22 WILD-TYPE
  T1             4              37
  T2             6             102
  T3             0              14
  T4             2               6
D31V7, multiclass
       clus
vv      TBX22 MUTATED TBX22 WILD-TYPE
  N0                8              87
  N1                2              35
  N2+N3             2              33
D31V8, multiclass
    clus
vv   TBX22 MUTATED TBX22 WILD-TYPE
  M0            11             126
  M1             0               9
  MX             1              21
D31V9, multiclass
     clus
vv    TBX22 MUTATED TBX22 WILD-TYPE
  I               7              81
  II              1              32
  III             4              35
  IV              0               9
D31V10, binary
[1] "tbl2"
                 cls
clus              [,1] [,2]
  TBX22 MUTATED      0   12
  TBX22 WILD-TYPE   16  144
     clus
vv    TBX22 MUTATED TBX22 WILD-TYPE
  NO              0              16
  YES            12             144
D31V11, continuous
D31V12, continuous
D31V13, multiclass
                                             clus
vv                                            TBX22 MUTATED TBX22 WILD-TYPE
  CURRENT REFORMED SMOKER FOR < OR = 15 YEARS             6              56
  CURRENT REFORMED SMOKER FOR > 15 YEARS                  3              43
  CURRENT SMOKER                                          1              27
  LIFELONG NON-SMOKER                                     2              22
D31V14, continuous

Clustering(32) Variable = BRAF MUTATION ANALYSIS
D32V1, survival
                sevent
clus2             0  1
  BRAF MUTATED    7  4
  BRAF WILD-TYPE 92 46
  BRAF MUTATED BRAF WILD-TYPE 
            11            138 
  BRAF MUTATED BRAF WILD-TYPE 
             4             46 
$`BRAF MUTATED`
TCGA-05-4249 TCGA-05-4382 TCGA-44-2662 TCGA-44-2666 TCGA-44-3918 TCGA-44-6774 
       38.07        19.92        15.78         3.19         6.44         5.42 
TCGA-50-5044 TCGA-50-5933 TCGA-50-5941 TCGA-50-5942 TCGA-50-6594 
       20.48        77.88         9.37         4.44        12.16 

$`BRAF WILD-TYPE`
TCGA-05-4250 TCGA-05-4384 TCGA-05-4390 TCGA-05-4396 TCGA-05-4397 TCGA-05-4398 
        3.98        14.01        37.02         9.96        24.03        47.05 
TCGA-05-4402 TCGA-05-4405 TCGA-05-4415 TCGA-05-4417 TCGA-05-4418 TCGA-05-4420 
        8.02        20.05         2.96        14.93         8.98        29.95 
TCGA-05-4424 TCGA-05-4426 TCGA-05-4427 TCGA-05-4430 TCGA-05-4432 TCGA-05-4433 
       30.02        26.01        26.01        25.02        25.02        24.00 
TCGA-05-4434 TCGA-05-5420 TCGA-05-5423 TCGA-05-5425 TCGA-05-5429 TCGA-05-5715 
       15.02         1.02         4.96         2.96         0.99         2.04 
TCGA-35-3615 TCGA-35-4122 TCGA-35-4123 TCGA-35-5375 TCGA-38-4625 TCGA-38-4626 
        0.46         7.36         5.95         8.68        47.61        85.32 
TCGA-38-4627 TCGA-38-4628 TCGA-38-4629 TCGA-38-4630 TCGA-38-4631 TCGA-38-4632 
       37.71        49.02        28.37        35.28        11.64        44.61 
TCGA-38-6178 TCGA-44-2655 TCGA-44-2656 TCGA-44-2657 TCGA-44-2659 TCGA-44-2661 
        5.19        18.87        19.10        13.15        17.39         3.39 
TCGA-44-2665 TCGA-44-2668 TCGA-44-3396 TCGA-44-3398 TCGA-44-3919 TCGA-44-4112 
       13.15         8.09        10.22         8.32         6.21         4.60 
TCGA-44-5643 TCGA-44-5645 TCGA-44-6144 TCGA-44-6145 TCGA-44-6146 TCGA-44-6147 
        3.48         6.84         0.30         3.35         9.93         7.76 
TCGA-44-6148 TCGA-44-6775 TCGA-44-6776 TCGA-44-6777 TCGA-44-6778 TCGA-44-6779 
        3.12         2.70        63.72        32.45        36.49        16.41 
TCGA-49-4486 TCGA-49-4487 TCGA-49-4488 TCGA-49-4490 TCGA-49-4494 TCGA-49-4501 
       76.21        28.11        28.57        12.66        35.54        46.72 
TCGA-49-4505 TCGA-49-4506 TCGA-49-4507 TCGA-49-4510 TCGA-49-4512 TCGA-49-4514 
       14.07        32.84         8.81        29.46        29.75        43.20 
TCGA-49-6742 TCGA-49-6743 TCGA-49-6744 TCGA-49-6745 TCGA-50-5045 TCGA-50-5049 
       15.02        12.13        12.99         4.93        71.47        48.82 
TCGA-50-5051 TCGA-50-5055 TCGA-50-5066 TCGA-50-5068 TCGA-50-5072 TCGA-50-5930 
       14.96        25.81         9.76        49.28         8.05         9.27 
TCGA-50-5931 TCGA-50-5932 TCGA-50-5935 TCGA-50-5936 TCGA-50-5939 TCGA-50-5944 
        8.78        35.87        21.47         8.45        15.12        12.26 
TCGA-50-5946 TCGA-50-6590 TCGA-50-6591 TCGA-50-6592 TCGA-50-6593 TCGA-50-6595 
       11.47        42.31         3.88        25.51        11.05         6.21 
TCGA-50-6597 TCGA-55-1592 TCGA-55-1594 TCGA-55-1595 TCGA-55-1596 TCGA-55-5899 
       33.37        23.05        38.73        48.62        45.17         2.86 
TCGA-55-6543 TCGA-55-6642 TCGA-55-6712 TCGA-64-1676 TCGA-64-1677 TCGA-64-1678 
        0.07        32.61         0.79        56.81        20.65        39.09 
TCGA-64-1680 TCGA-64-5774 TCGA-64-5775 TCGA-64-5778 TCGA-64-5779 TCGA-64-5781 
       37.02        83.84         0.10        30.44        16.67        39.52 
TCGA-64-5815 TCGA-67-3770 TCGA-67-3771 TCGA-67-3772 TCGA-67-3773 TCGA-67-3774 
        7.33         0.99         1.97         0.59         2.04         0.59 
TCGA-67-6215 TCGA-67-6216 TCGA-67-6217 TCGA-71-6725 TCGA-73-4658 TCGA-73-4659 
        0.89         0.69        13.87         2.01        52.57        23.38 
TCGA-73-4662 TCGA-73-4666 TCGA-73-4668 TCGA-73-4670 TCGA-73-4675 TCGA-73-4676 
       29.95        20.28        15.35         0.46         1.32         4.01 
TCGA-73-4677 TCGA-91-6828 TCGA-91-6829 TCGA-91-6831 TCGA-91-6835 TCGA-91-6836 
        1.25         1.22        41.33         1.28         1.15         0.36 

  BRAF MUTATED BRAF WILD-TYPE 
          3.19           0.07 
  BRAF MUTATED BRAF WILD-TYPE 
         77.88          85.32 
  BRAF MUTATED BRAF WILD-TYPE 
         12.16          13.94 
[1] "3.2 - 77.9 (12.2)" "0.1 - 85.3 (13.9)"
    TCGA-05-4249     TCGA-05-4250     TCGA-05-4382     TCGA-05-4384 
  "BRAF MUTATED" "BRAF WILD-TYPE"   "BRAF MUTATED" "BRAF WILD-TYPE" 
    TCGA-05-4390     TCGA-05-4396     TCGA-05-4397     TCGA-05-4398 
"BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" 
    TCGA-05-4402     TCGA-05-4405     TCGA-05-4415     TCGA-05-4417 
"BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" 
    TCGA-05-4418     TCGA-05-4420     TCGA-05-4424     TCGA-05-4426 
"BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" 
    TCGA-05-4427     TCGA-05-4430     TCGA-05-4432     TCGA-05-4433 
"BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" 
    TCGA-05-4434     TCGA-05-5420     TCGA-05-5423     TCGA-05-5425 
"BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" 
    TCGA-05-5429     TCGA-05-5715     TCGA-35-3615     TCGA-35-4122 
"BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" 
    TCGA-35-4123     TCGA-35-5375     TCGA-38-4625     TCGA-38-4626 
"BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" 
    TCGA-38-4627     TCGA-38-4628     TCGA-38-4629     TCGA-38-4630 
"BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" 
    TCGA-38-4631     TCGA-38-4632     TCGA-38-6178     TCGA-44-2655 
"BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" 
    TCGA-44-2656     TCGA-44-2657     TCGA-44-2659     TCGA-44-2661 
"BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" 
    TCGA-44-2662     TCGA-44-2665     TCGA-44-2666     TCGA-44-2668 
  "BRAF MUTATED" "BRAF WILD-TYPE"   "BRAF MUTATED" "BRAF WILD-TYPE" 
    TCGA-44-3396     TCGA-44-3398     TCGA-44-3918     TCGA-44-3919 
"BRAF WILD-TYPE" "BRAF WILD-TYPE"   "BRAF MUTATED" "BRAF WILD-TYPE" 
    TCGA-44-4112     TCGA-44-5643     TCGA-44-5645     TCGA-44-6144 
"BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" 
    TCGA-44-6145     TCGA-44-6146     TCGA-44-6147     TCGA-44-6148 
"BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" 
    TCGA-44-6774     TCGA-44-6775     TCGA-44-6776     TCGA-44-6777 
  "BRAF MUTATED" "BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" 
    TCGA-44-6778     TCGA-44-6779     TCGA-49-4486     TCGA-49-4487 
"BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" 
    TCGA-49-4488     TCGA-49-4490     TCGA-49-4494     TCGA-49-4501 
"BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" 
    TCGA-49-4505     TCGA-49-4506     TCGA-49-4507     TCGA-49-4510 
"BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" 
    TCGA-49-4512     TCGA-49-4514     TCGA-49-6742     TCGA-49-6743 
"BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" 
    TCGA-49-6744     TCGA-49-6745     TCGA-50-5044     TCGA-50-5045 
"BRAF WILD-TYPE" "BRAF WILD-TYPE"   "BRAF MUTATED" "BRAF WILD-TYPE" 
    TCGA-50-5049     TCGA-50-5051     TCGA-50-5055     TCGA-50-5066 
"BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" 
    TCGA-50-5068     TCGA-50-5072     TCGA-50-5930     TCGA-50-5931 
"BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" 
    TCGA-50-5932     TCGA-50-5933     TCGA-50-5935     TCGA-50-5936 
"BRAF WILD-TYPE"   "BRAF MUTATED" "BRAF WILD-TYPE" "BRAF WILD-TYPE" 
    TCGA-50-5939     TCGA-50-5941     TCGA-50-5942     TCGA-50-5944 
"BRAF WILD-TYPE"   "BRAF MUTATED"   "BRAF MUTATED" "BRAF WILD-TYPE" 
    TCGA-50-5946     TCGA-50-6590     TCGA-50-6591     TCGA-50-6592 
"BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" 
    TCGA-50-6593     TCGA-50-6594     TCGA-50-6595     TCGA-50-6597 
"BRAF WILD-TYPE"   "BRAF MUTATED" "BRAF WILD-TYPE" "BRAF WILD-TYPE" 
    TCGA-55-1592     TCGA-55-1594     TCGA-55-1595     TCGA-55-1596 
"BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" 
    TCGA-55-5899     TCGA-55-6543     TCGA-55-6642     TCGA-55-6712 
"BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" 
    TCGA-64-1676     TCGA-64-1677     TCGA-64-1678     TCGA-64-1680 
"BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" 
    TCGA-64-5774     TCGA-64-5775     TCGA-64-5778     TCGA-64-5779 
"BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" 
    TCGA-64-5781     TCGA-64-5815     TCGA-67-3770     TCGA-67-3771 
"BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" 
    TCGA-67-3772     TCGA-67-3773     TCGA-67-3774     TCGA-67-6215 
"BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" 
    TCGA-67-6216     TCGA-67-6217     TCGA-71-6725     TCGA-73-4658 
"BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" 
    TCGA-73-4659     TCGA-73-4662     TCGA-73-4666     TCGA-73-4668 
"BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" 
    TCGA-73-4670     TCGA-73-4675     TCGA-73-4676     TCGA-73-4677 
"BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" 
    TCGA-91-6828     TCGA-91-6829     TCGA-91-6831     TCGA-91-6835 
"BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" 
    TCGA-91-6836 
"BRAF WILD-TYPE" 
    TCGA-05-4249     TCGA-05-4250     TCGA-05-4382     TCGA-05-4384 
  "BRAF MUTATED" "BRAF WILD-TYPE"   "BRAF MUTATED" "BRAF WILD-TYPE" 
    TCGA-05-4390     TCGA-05-4396     TCGA-05-4397     TCGA-05-4398 
"BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" 
    TCGA-05-4402     TCGA-05-4405     TCGA-05-4415     TCGA-05-4417 
"BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" 
    TCGA-05-4418     TCGA-05-4420     TCGA-05-4424     TCGA-05-4426 
"BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" 
    TCGA-05-4427     TCGA-05-4430     TCGA-05-4432     TCGA-05-4433 
"BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" 
    TCGA-05-4434     TCGA-05-5420     TCGA-05-5423     TCGA-05-5425 
"BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" 
    TCGA-05-5429     TCGA-05-5715     TCGA-35-3615     TCGA-35-4122 
"BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" 
    TCGA-35-4123     TCGA-35-5375     TCGA-38-4625     TCGA-38-4626 
"BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" 
    TCGA-38-4627     TCGA-38-4628     TCGA-38-4629     TCGA-38-4630 
"BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" 
    TCGA-38-4631     TCGA-38-4632     TCGA-38-6178     TCGA-44-2655 
"BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" 
    TCGA-44-2656     TCGA-44-2657     TCGA-44-2659     TCGA-44-2661 
"BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" 
    TCGA-44-2662     TCGA-44-2665     TCGA-44-2666     TCGA-44-2668 
  "BRAF MUTATED" "BRAF WILD-TYPE"   "BRAF MUTATED" "BRAF WILD-TYPE" 
    TCGA-44-3396     TCGA-44-3398     TCGA-44-3918     TCGA-44-3919 
"BRAF WILD-TYPE" "BRAF WILD-TYPE"   "BRAF MUTATED" "BRAF WILD-TYPE" 
    TCGA-44-4112     TCGA-44-5643     TCGA-44-5645     TCGA-44-6144 
"BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" 
    TCGA-44-6145     TCGA-44-6146     TCGA-44-6147     TCGA-44-6148 
"BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" 
    TCGA-44-6774     TCGA-44-6775     TCGA-44-6776     TCGA-44-6777 
  "BRAF MUTATED" "BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" 
    TCGA-44-6778     TCGA-44-6779     TCGA-49-4486     TCGA-49-4487 
"BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" 
    TCGA-49-4488     TCGA-49-4490     TCGA-49-4494     TCGA-49-4501 
"BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" 
    TCGA-49-4505     TCGA-49-4506     TCGA-49-4507     TCGA-49-4510 
"BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" 
    TCGA-49-4512     TCGA-49-4514     TCGA-49-6742     TCGA-49-6743 
"BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" 
    TCGA-49-6744     TCGA-49-6745     TCGA-50-5044     TCGA-50-5045 
"BRAF WILD-TYPE" "BRAF WILD-TYPE"   "BRAF MUTATED" "BRAF WILD-TYPE" 
    TCGA-50-5049     TCGA-50-5051     TCGA-50-5055     TCGA-50-5066 
"BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" 
    TCGA-50-5068     TCGA-50-5072     TCGA-50-5930     TCGA-50-5931 
"BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" 
    TCGA-50-5932     TCGA-50-5933     TCGA-50-5935     TCGA-50-5936 
"BRAF WILD-TYPE"   "BRAF MUTATED" "BRAF WILD-TYPE" "BRAF WILD-TYPE" 
    TCGA-50-5939     TCGA-50-5941     TCGA-50-5942     TCGA-50-5944 
"BRAF WILD-TYPE"   "BRAF MUTATED"   "BRAF MUTATED" "BRAF WILD-TYPE" 
    TCGA-50-5946     TCGA-50-6590     TCGA-50-6591     TCGA-50-6592 
"BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" 
    TCGA-50-6593     TCGA-50-6594     TCGA-50-6595     TCGA-50-6597 
"BRAF WILD-TYPE"   "BRAF MUTATED" "BRAF WILD-TYPE" "BRAF WILD-TYPE" 
    TCGA-55-1592     TCGA-55-1594     TCGA-55-1595     TCGA-55-1596 
"BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" 
    TCGA-55-5899     TCGA-55-6543     TCGA-55-6642     TCGA-55-6712 
"BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" 
    TCGA-64-1676     TCGA-64-1677     TCGA-64-1678     TCGA-64-1680 
"BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" 
    TCGA-64-5774     TCGA-64-5775     TCGA-64-5778     TCGA-64-5779 
"BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" 
    TCGA-64-5781     TCGA-64-5815     TCGA-67-3770     TCGA-67-3771 
"BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" 
    TCGA-67-3772     TCGA-67-3773     TCGA-67-3774     TCGA-67-6215 
"BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" 
    TCGA-67-6216     TCGA-67-6217     TCGA-71-6725     TCGA-73-4658 
"BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" 
    TCGA-73-4659     TCGA-73-4662     TCGA-73-4666     TCGA-73-4668 
"BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" 
    TCGA-73-4670     TCGA-73-4675     TCGA-73-4676     TCGA-73-4677 
"BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" 
    TCGA-91-6828     TCGA-91-6829     TCGA-91-6831     TCGA-91-6835 
"BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" 
    TCGA-91-6836 
"BRAF WILD-TYPE" 
    TCGA-05-4249     TCGA-05-4250     TCGA-05-4382     TCGA-05-4384 
  "BRAF MUTATED" "BRAF WILD-TYPE"   "BRAF MUTATED" "BRAF WILD-TYPE" 
    TCGA-05-4390     TCGA-05-4396     TCGA-05-4397     TCGA-05-4398 
"BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" 
    TCGA-05-4402     TCGA-05-4405     TCGA-05-4415     TCGA-05-4417 
"BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" 
    TCGA-05-4418     TCGA-05-4420     TCGA-05-4424     TCGA-05-4426 
"BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" 
    TCGA-05-4427     TCGA-05-4430     TCGA-05-4432     TCGA-05-4433 
"BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" 
    TCGA-05-4434     TCGA-05-5420     TCGA-05-5423     TCGA-05-5425 
"BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" 
    TCGA-05-5429     TCGA-05-5715     TCGA-35-3615     TCGA-35-4122 
"BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" 
    TCGA-35-4123     TCGA-35-5375     TCGA-38-4625     TCGA-38-4626 
"BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" 
    TCGA-38-4627     TCGA-38-4628     TCGA-38-4629     TCGA-38-4630 
"BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" 
    TCGA-38-4631     TCGA-38-4632     TCGA-38-6178     TCGA-44-2655 
"BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" 
    TCGA-44-2656     TCGA-44-2657     TCGA-44-2659     TCGA-44-2661 
"BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" 
    TCGA-44-2662     TCGA-44-2665     TCGA-44-2666     TCGA-44-2668 
  "BRAF MUTATED" "BRAF WILD-TYPE"   "BRAF MUTATED" "BRAF WILD-TYPE" 
    TCGA-44-3396     TCGA-44-3398     TCGA-44-3918     TCGA-44-3919 
"BRAF WILD-TYPE" "BRAF WILD-TYPE"   "BRAF MUTATED" "BRAF WILD-TYPE" 
    TCGA-44-4112     TCGA-44-5643     TCGA-44-5645     TCGA-44-6144 
"BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" 
    TCGA-44-6145     TCGA-44-6146     TCGA-44-6147     TCGA-44-6148 
"BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" 
    TCGA-44-6774     TCGA-44-6775     TCGA-44-6776     TCGA-44-6777 
  "BRAF MUTATED" "BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" 
    TCGA-44-6778     TCGA-44-6779     TCGA-49-4486     TCGA-49-4487 
"BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" 
    TCGA-49-4488     TCGA-49-4490     TCGA-49-4494     TCGA-49-4501 
"BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" 
    TCGA-49-4505     TCGA-49-4506     TCGA-49-4507     TCGA-49-4510 
"BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" 
    TCGA-49-4512     TCGA-49-4514     TCGA-49-6742     TCGA-49-6743 
"BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" 
    TCGA-49-6744     TCGA-49-6745     TCGA-50-5044     TCGA-50-5045 
"BRAF WILD-TYPE" "BRAF WILD-TYPE"   "BRAF MUTATED" "BRAF WILD-TYPE" 
    TCGA-50-5049     TCGA-50-5051     TCGA-50-5055     TCGA-50-5066 
"BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" 
    TCGA-50-5068     TCGA-50-5072     TCGA-50-5930     TCGA-50-5931 
"BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" 
    TCGA-50-5932     TCGA-50-5933     TCGA-50-5935     TCGA-50-5936 
"BRAF WILD-TYPE"   "BRAF MUTATED" "BRAF WILD-TYPE" "BRAF WILD-TYPE" 
    TCGA-50-5939     TCGA-50-5941     TCGA-50-5942     TCGA-50-5944 
"BRAF WILD-TYPE"   "BRAF MUTATED"   "BRAF MUTATED" "BRAF WILD-TYPE" 
    TCGA-50-5946     TCGA-50-6590     TCGA-50-6591     TCGA-50-6592 
"BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" 
    TCGA-50-6593     TCGA-50-6594     TCGA-50-6595     TCGA-50-6597 
"BRAF WILD-TYPE"   "BRAF MUTATED" "BRAF WILD-TYPE" "BRAF WILD-TYPE" 
    TCGA-55-1592     TCGA-55-1594     TCGA-55-1595     TCGA-55-1596 
"BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" 
    TCGA-55-5899     TCGA-55-6543     TCGA-55-6642     TCGA-55-6712 
"BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" 
    TCGA-64-1676     TCGA-64-1677     TCGA-64-1678     TCGA-64-1680 
"BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" 
    TCGA-64-5774     TCGA-64-5775     TCGA-64-5778     TCGA-64-5779 
"BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" 
    TCGA-64-5781     TCGA-64-5815     TCGA-67-3770     TCGA-67-3771 
"BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" 
    TCGA-67-3772     TCGA-67-3773     TCGA-67-3774     TCGA-67-6215 
"BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" 
    TCGA-67-6216     TCGA-67-6217     TCGA-71-6725     TCGA-73-4658 
"BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" 
    TCGA-73-4659     TCGA-73-4662     TCGA-73-4666     TCGA-73-4668 
"BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" 
    TCGA-73-4670     TCGA-73-4675     TCGA-73-4676     TCGA-73-4677 
"BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" 
    TCGA-91-6828     TCGA-91-6829     TCGA-91-6831     TCGA-91-6835 
"BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" 
    TCGA-91-6836 
"BRAF WILD-TYPE" 
[1] "hr=" "1"  
D32V2, continuous
D32V3, binary
[1] "tbl2"
                cls
clus             [,1] [,2]
  BRAF MUTATED      6    9
  BRAF WILD-TYPE   87   70
        clus
vv       BRAF MUTATED BRAF WILD-TYPE
  FEMALE            6             87
  MALE              9             70
D32V4, continuous
D32V5, multiclass
D32V6, multiclass
    clus
vv   BRAF MUTATED BRAF WILD-TYPE
  T1            5             36
  T2            7            101
  T3            1             13
  T4            2              6
D32V7, multiclass
       clus
vv      BRAF MUTATED BRAF WILD-TYPE
  N0               9             86
  N1               2             35
  N2+N3            4             31
D32V8, multiclass
    clus
vv   BRAF MUTATED BRAF WILD-TYPE
  M0           15            122
  M1            0              9
  MX            0             22
D32V9, multiclass
     clus
vv    BRAF MUTATED BRAF WILD-TYPE
  I              8             80
  II             1             32
  III            5             34
  IV             0              9
D32V10, binary
[1] "tbl2"
                cls
clus             [,1] [,2]
  BRAF MUTATED      2   13
  BRAF WILD-TYPE   14  143
     clus
vv    BRAF MUTATED BRAF WILD-TYPE
  NO             2             14
  YES           13            143
D32V11, continuous
D32V12, continuous
D32V13, multiclass
                                             clus
vv                                            BRAF MUTATED BRAF WILD-TYPE
  CURRENT REFORMED SMOKER FOR < OR = 15 YEARS            4             58
  CURRENT REFORMED SMOKER FOR > 15 YEARS                 6             40
  CURRENT SMOKER                                         3             25
  LIFELONG NON-SMOKER                                    0             24
D32V14, continuous

Clustering(33) Variable = OR5W2 MUTATION ANALYSIS
D33V1, survival
                 sevent
clus2              0  1
  OR5W2 MUTATED    5  4
  OR5W2 WILD-TYPE 94 46
  OR5W2 MUTATED OR5W2 WILD-TYPE 
              9             140 
  OR5W2 MUTATED OR5W2 WILD-TYPE 
              4              46 
$`OR5W2 MUTATED`
TCGA-05-4382 TCGA-05-4415 TCGA-44-2665 TCGA-49-4507 TCGA-50-6592 TCGA-55-1595 
       19.92         2.96        13.15         8.81        25.51        48.62 
TCGA-64-1678 TCGA-73-4659 TCGA-91-6836 
       39.09        23.38         0.36 

$`OR5W2 WILD-TYPE`
TCGA-05-4249 TCGA-05-4250 TCGA-05-4384 TCGA-05-4390 TCGA-05-4396 TCGA-05-4397 
       38.07         3.98        14.01        37.02         9.96        24.03 
TCGA-05-4398 TCGA-05-4402 TCGA-05-4405 TCGA-05-4417 TCGA-05-4418 TCGA-05-4420 
       47.05         8.02        20.05        14.93         8.98        29.95 
TCGA-05-4424 TCGA-05-4426 TCGA-05-4427 TCGA-05-4430 TCGA-05-4432 TCGA-05-4433 
       30.02        26.01        26.01        25.02        25.02        24.00 
TCGA-05-4434 TCGA-05-5420 TCGA-05-5423 TCGA-05-5425 TCGA-05-5429 TCGA-05-5715 
       15.02         1.02         4.96         2.96         0.99         2.04 
TCGA-35-3615 TCGA-35-4122 TCGA-35-4123 TCGA-35-5375 TCGA-38-4625 TCGA-38-4626 
        0.46         7.36         5.95         8.68        47.61        85.32 
TCGA-38-4627 TCGA-38-4628 TCGA-38-4629 TCGA-38-4630 TCGA-38-4631 TCGA-38-4632 
       37.71        49.02        28.37        35.28        11.64        44.61 
TCGA-38-6178 TCGA-44-2655 TCGA-44-2656 TCGA-44-2657 TCGA-44-2659 TCGA-44-2661 
        5.19        18.87        19.10        13.15        17.39         3.39 
TCGA-44-2662 TCGA-44-2666 TCGA-44-2668 TCGA-44-3396 TCGA-44-3398 TCGA-44-3918 
       15.78         3.19         8.09        10.22         8.32         6.44 
TCGA-44-3919 TCGA-44-4112 TCGA-44-5643 TCGA-44-5645 TCGA-44-6144 TCGA-44-6145 
        6.21         4.60         3.48         6.84         0.30         3.35 
TCGA-44-6146 TCGA-44-6147 TCGA-44-6148 TCGA-44-6774 TCGA-44-6775 TCGA-44-6776 
        9.93         7.76         3.12         5.42         2.70        63.72 
TCGA-44-6777 TCGA-44-6778 TCGA-44-6779 TCGA-49-4486 TCGA-49-4487 TCGA-49-4488 
       32.45        36.49        16.41        76.21        28.11        28.57 
TCGA-49-4490 TCGA-49-4494 TCGA-49-4501 TCGA-49-4505 TCGA-49-4506 TCGA-49-4510 
       12.66        35.54        46.72        14.07        32.84        29.46 
TCGA-49-4512 TCGA-49-4514 TCGA-49-6742 TCGA-49-6743 TCGA-49-6744 TCGA-49-6745 
       29.75        43.20        15.02        12.13        12.99         4.93 
TCGA-50-5044 TCGA-50-5045 TCGA-50-5049 TCGA-50-5051 TCGA-50-5055 TCGA-50-5066 
       20.48        71.47        48.82        14.96        25.81         9.76 
TCGA-50-5068 TCGA-50-5072 TCGA-50-5930 TCGA-50-5931 TCGA-50-5932 TCGA-50-5933 
       49.28         8.05         9.27         8.78        35.87        77.88 
TCGA-50-5935 TCGA-50-5936 TCGA-50-5939 TCGA-50-5941 TCGA-50-5942 TCGA-50-5944 
       21.47         8.45        15.12         9.37         4.44        12.26 
TCGA-50-5946 TCGA-50-6590 TCGA-50-6591 TCGA-50-6593 TCGA-50-6594 TCGA-50-6595 
       11.47        42.31         3.88        11.05        12.16         6.21 
TCGA-50-6597 TCGA-55-1592 TCGA-55-1594 TCGA-55-1596 TCGA-55-5899 TCGA-55-6543 
       33.37        23.05        38.73        45.17         2.86         0.07 
TCGA-55-6642 TCGA-55-6712 TCGA-64-1676 TCGA-64-1677 TCGA-64-1680 TCGA-64-5774 
       32.61         0.79        56.81        20.65        37.02        83.84 
TCGA-64-5775 TCGA-64-5778 TCGA-64-5779 TCGA-64-5781 TCGA-64-5815 TCGA-67-3770 
        0.10        30.44        16.67        39.52         7.33         0.99 
TCGA-67-3771 TCGA-67-3772 TCGA-67-3773 TCGA-67-3774 TCGA-67-6215 TCGA-67-6216 
        1.97         0.59         2.04         0.59         0.89         0.69 
TCGA-67-6217 TCGA-71-6725 TCGA-73-4658 TCGA-73-4662 TCGA-73-4666 TCGA-73-4668 
       13.87         2.01        52.57        29.95        20.28        15.35 
TCGA-73-4670 TCGA-73-4675 TCGA-73-4676 TCGA-73-4677 TCGA-91-6828 TCGA-91-6829 
        0.46         1.32         4.01         1.25         1.22        41.33 
TCGA-91-6831 TCGA-91-6835 
        1.28         1.15 

  OR5W2 MUTATED OR5W2 WILD-TYPE 
           0.36            0.07 
  OR5W2 MUTATED OR5W2 WILD-TYPE 
          48.62           85.32 
  OR5W2 MUTATED OR5W2 WILD-TYPE 
          19.92           13.51 
[1] "0.4 - 48.6 (19.9)" "0.1 - 85.3 (13.5)"
     TCGA-05-4249      TCGA-05-4250      TCGA-05-4382      TCGA-05-4384 
"OR5W2 WILD-TYPE" "OR5W2 WILD-TYPE"   "OR5W2 MUTATED" "OR5W2 WILD-TYPE" 
     TCGA-05-4390      TCGA-05-4396      TCGA-05-4397      TCGA-05-4398 
"OR5W2 WILD-TYPE" "OR5W2 WILD-TYPE" "OR5W2 WILD-TYPE" "OR5W2 WILD-TYPE" 
     TCGA-05-4402      TCGA-05-4405      TCGA-05-4415      TCGA-05-4417 
"OR5W2 WILD-TYPE" "OR5W2 WILD-TYPE"   "OR5W2 MUTATED" "OR5W2 WILD-TYPE" 
     TCGA-05-4418      TCGA-05-4420      TCGA-05-4424      TCGA-05-4426 
"OR5W2 WILD-TYPE" "OR5W2 WILD-TYPE" "OR5W2 WILD-TYPE" "OR5W2 WILD-TYPE" 
     TCGA-05-4427      TCGA-05-4430      TCGA-05-4432      TCGA-05-4433 
"OR5W2 WILD-TYPE" "OR5W2 WILD-TYPE" "OR5W2 WILD-TYPE" "OR5W2 WILD-TYPE" 
     TCGA-05-4434      TCGA-05-5420      TCGA-05-5423      TCGA-05-5425 
"OR5W2 WILD-TYPE" "OR5W2 WILD-TYPE" "OR5W2 WILD-TYPE" "OR5W2 WILD-TYPE" 
     TCGA-05-5429      TCGA-05-5715      TCGA-35-3615      TCGA-35-4122 
"OR5W2 WILD-TYPE" "OR5W2 WILD-TYPE" "OR5W2 WILD-TYPE" "OR5W2 WILD-TYPE" 
     TCGA-35-4123      TCGA-35-5375      TCGA-38-4625      TCGA-38-4626 
"OR5W2 WILD-TYPE" "OR5W2 WILD-TYPE" "OR5W2 WILD-TYPE" "OR5W2 WILD-TYPE" 
     TCGA-38-4627      TCGA-38-4628      TCGA-38-4629      TCGA-38-4630 
"OR5W2 WILD-TYPE" "OR5W2 WILD-TYPE" "OR5W2 WILD-TYPE" "OR5W2 WILD-TYPE" 
     TCGA-38-4631      TCGA-38-4632      TCGA-38-6178      TCGA-44-2655 
"OR5W2 WILD-TYPE" "OR5W2 WILD-TYPE" "OR5W2 WILD-TYPE" "OR5W2 WILD-TYPE" 
     TCGA-44-2656      TCGA-44-2657      TCGA-44-2659      TCGA-44-2661 
"OR5W2 WILD-TYPE" "OR5W2 WILD-TYPE" "OR5W2 WILD-TYPE" "OR5W2 WILD-TYPE" 
     TCGA-44-2662      TCGA-44-2665      TCGA-44-2666      TCGA-44-2668 
"OR5W2 WILD-TYPE"   "OR5W2 MUTATED" "OR5W2 WILD-TYPE" "OR5W2 WILD-TYPE" 
     TCGA-44-3396      TCGA-44-3398      TCGA-44-3918      TCGA-44-3919 
"OR5W2 WILD-TYPE" "OR5W2 WILD-TYPE" "OR5W2 WILD-TYPE" "OR5W2 WILD-TYPE" 
     TCGA-44-4112      TCGA-44-5643      TCGA-44-5645      TCGA-44-6144 
"OR5W2 WILD-TYPE" "OR5W2 WILD-TYPE" "OR5W2 WILD-TYPE" "OR5W2 WILD-TYPE" 
     TCGA-44-6145      TCGA-44-6146      TCGA-44-6147      TCGA-44-6148 
"OR5W2 WILD-TYPE" "OR5W2 WILD-TYPE" "OR5W2 WILD-TYPE" "OR5W2 WILD-TYPE" 
     TCGA-44-6774      TCGA-44-6775      TCGA-44-6776      TCGA-44-6777 
"OR5W2 WILD-TYPE" "OR5W2 WILD-TYPE" "OR5W2 WILD-TYPE" "OR5W2 WILD-TYPE" 
     TCGA-44-6778      TCGA-44-6779      TCGA-49-4486      TCGA-49-4487 
"OR5W2 WILD-TYPE" "OR5W2 WILD-TYPE" "OR5W2 WILD-TYPE" "OR5W2 WILD-TYPE" 
     TCGA-49-4488      TCGA-49-4490      TCGA-49-4494      TCGA-49-4501 
"OR5W2 WILD-TYPE" "OR5W2 WILD-TYPE" "OR5W2 WILD-TYPE" "OR5W2 WILD-TYPE" 
     TCGA-49-4505      TCGA-49-4506      TCGA-49-4507      TCGA-49-4510 
"OR5W2 WILD-TYPE" "OR5W2 WILD-TYPE"   "OR5W2 MUTATED" "OR5W2 WILD-TYPE" 
     TCGA-49-4512      TCGA-49-4514      TCGA-49-6742      TCGA-49-6743 
"OR5W2 WILD-TYPE" "OR5W2 WILD-TYPE" "OR5W2 WILD-TYPE" "OR5W2 WILD-TYPE" 
     TCGA-49-6744      TCGA-49-6745      TCGA-50-5044      TCGA-50-5045 
"OR5W2 WILD-TYPE" "OR5W2 WILD-TYPE" "OR5W2 WILD-TYPE" "OR5W2 WILD-TYPE" 
     TCGA-50-5049      TCGA-50-5051      TCGA-50-5055      TCGA-50-5066 
"OR5W2 WILD-TYPE" "OR5W2 WILD-TYPE" "OR5W2 WILD-TYPE" "OR5W2 WILD-TYPE" 
     TCGA-50-5068      TCGA-50-5072      TCGA-50-5930      TCGA-50-5931 
"OR5W2 WILD-TYPE" "OR5W2 WILD-TYPE" "OR5W2 WILD-TYPE" "OR5W2 WILD-TYPE" 
     TCGA-50-5932      TCGA-50-5933      TCGA-50-5935      TCGA-50-5936 
"OR5W2 WILD-TYPE" "OR5W2 WILD-TYPE" "OR5W2 WILD-TYPE" "OR5W2 WILD-TYPE" 
     TCGA-50-5939      TCGA-50-5941      TCGA-50-5942      TCGA-50-5944 
"OR5W2 WILD-TYPE" "OR5W2 WILD-TYPE" "OR5W2 WILD-TYPE" "OR5W2 WILD-TYPE" 
     TCGA-50-5946      TCGA-50-6590      TCGA-50-6591      TCGA-50-6592 
"OR5W2 WILD-TYPE" "OR5W2 WILD-TYPE" "OR5W2 WILD-TYPE"   "OR5W2 MUTATED" 
     TCGA-50-6593      TCGA-50-6594      TCGA-50-6595      TCGA-50-6597 
"OR5W2 WILD-TYPE" "OR5W2 WILD-TYPE" "OR5W2 WILD-TYPE" "OR5W2 WILD-TYPE" 
     TCGA-55-1592      TCGA-55-1594      TCGA-55-1595      TCGA-55-1596 
"OR5W2 WILD-TYPE" "OR5W2 WILD-TYPE"   "OR5W2 MUTATED" "OR5W2 WILD-TYPE" 
     TCGA-55-5899      TCGA-55-6543      TCGA-55-6642      TCGA-55-6712 
"OR5W2 WILD-TYPE" "OR5W2 WILD-TYPE" "OR5W2 WILD-TYPE" "OR5W2 WILD-TYPE" 
     TCGA-64-1676      TCGA-64-1677      TCGA-64-1678      TCGA-64-1680 
"OR5W2 WILD-TYPE" "OR5W2 WILD-TYPE"   "OR5W2 MUTATED" "OR5W2 WILD-TYPE" 
     TCGA-64-5774      TCGA-64-5775      TCGA-64-5778      TCGA-64-5779 
"OR5W2 WILD-TYPE" "OR5W2 WILD-TYPE" "OR5W2 WILD-TYPE" "OR5W2 WILD-TYPE" 
     TCGA-64-5781      TCGA-64-5815      TCGA-67-3770      TCGA-67-3771 
"OR5W2 WILD-TYPE" "OR5W2 WILD-TYPE" "OR5W2 WILD-TYPE" "OR5W2 WILD-TYPE" 
     TCGA-67-3772      TCGA-67-3773      TCGA-67-3774      TCGA-67-6215 
"OR5W2 WILD-TYPE" "OR5W2 WILD-TYPE" "OR5W2 WILD-TYPE" "OR5W2 WILD-TYPE" 
     TCGA-67-6216      TCGA-67-6217      TCGA-71-6725      TCGA-73-4658 
"OR5W2 WILD-TYPE" "OR5W2 WILD-TYPE" "OR5W2 WILD-TYPE" "OR5W2 WILD-TYPE" 
     TCGA-73-4659      TCGA-73-4662      TCGA-73-4666      TCGA-73-4668 
  "OR5W2 MUTATED" "OR5W2 WILD-TYPE" "OR5W2 WILD-TYPE" "OR5W2 WILD-TYPE" 
     TCGA-73-4670      TCGA-73-4675      TCGA-73-4676      TCGA-73-4677 
"OR5W2 WILD-TYPE" "OR5W2 WILD-TYPE" "OR5W2 WILD-TYPE" "OR5W2 WILD-TYPE" 
     TCGA-91-6828      TCGA-91-6829      TCGA-91-6831      TCGA-91-6835 
"OR5W2 WILD-TYPE" "OR5W2 WILD-TYPE" "OR5W2 WILD-TYPE" "OR5W2 WILD-TYPE" 
     TCGA-91-6836 
  "OR5W2 MUTATED" 
     TCGA-05-4249      TCGA-05-4250      TCGA-05-4382      TCGA-05-4384 
"OR5W2 WILD-TYPE" "OR5W2 WILD-TYPE"   "OR5W2 MUTATED" "OR5W2 WILD-TYPE" 
     TCGA-05-4390      TCGA-05-4396      TCGA-05-4397      TCGA-05-4398 
"OR5W2 WILD-TYPE" "OR5W2 WILD-TYPE" "OR5W2 WILD-TYPE" "OR5W2 WILD-TYPE" 
     TCGA-05-4402      TCGA-05-4405      TCGA-05-4415      TCGA-05-4417 
"OR5W2 WILD-TYPE" "OR5W2 WILD-TYPE"   "OR5W2 MUTATED" "OR5W2 WILD-TYPE" 
     TCGA-05-4418      TCGA-05-4420      TCGA-05-4424      TCGA-05-4426 
"OR5W2 WILD-TYPE" "OR5W2 WILD-TYPE" "OR5W2 WILD-TYPE" "OR5W2 WILD-TYPE" 
     TCGA-05-4427      TCGA-05-4430      TCGA-05-4432      TCGA-05-4433 
"OR5W2 WILD-TYPE" "OR5W2 WILD-TYPE" "OR5W2 WILD-TYPE" "OR5W2 WILD-TYPE" 
     TCGA-05-4434      TCGA-05-5420      TCGA-05-5423      TCGA-05-5425 
"OR5W2 WILD-TYPE" "OR5W2 WILD-TYPE" "OR5W2 WILD-TYPE" "OR5W2 WILD-TYPE" 
     TCGA-05-5429      TCGA-05-5715      TCGA-35-3615      TCGA-35-4122 
"OR5W2 WILD-TYPE" "OR5W2 WILD-TYPE" "OR5W2 WILD-TYPE" "OR5W2 WILD-TYPE" 
     TCGA-35-4123      TCGA-35-5375      TCGA-38-4625      TCGA-38-4626 
"OR5W2 WILD-TYPE" "OR5W2 WILD-TYPE" "OR5W2 WILD-TYPE" "OR5W2 WILD-TYPE" 
     TCGA-38-4627      TCGA-38-4628      TCGA-38-4629      TCGA-38-4630 
"OR5W2 WILD-TYPE" "OR5W2 WILD-TYPE" "OR5W2 WILD-TYPE" "OR5W2 WILD-TYPE" 
     TCGA-38-4631      TCGA-38-4632      TCGA-38-6178      TCGA-44-2655 
"OR5W2 WILD-TYPE" "OR5W2 WILD-TYPE" "OR5W2 WILD-TYPE" "OR5W2 WILD-TYPE" 
     TCGA-44-2656      TCGA-44-2657      TCGA-44-2659      TCGA-44-2661 
"OR5W2 WILD-TYPE" "OR5W2 WILD-TYPE" "OR5W2 WILD-TYPE" "OR5W2 WILD-TYPE" 
     TCGA-44-2662      TCGA-44-2665      TCGA-44-2666      TCGA-44-2668 
"OR5W2 WILD-TYPE"   "OR5W2 MUTATED" "OR5W2 WILD-TYPE" "OR5W2 WILD-TYPE" 
     TCGA-44-3396      TCGA-44-3398      TCGA-44-3918      TCGA-44-3919 
"OR5W2 WILD-TYPE" "OR5W2 WILD-TYPE" "OR5W2 WILD-TYPE" "OR5W2 WILD-TYPE" 
     TCGA-44-4112      TCGA-44-5643      TCGA-44-5645      TCGA-44-6144 
"OR5W2 WILD-TYPE" "OR5W2 WILD-TYPE" "OR5W2 WILD-TYPE" "OR5W2 WILD-TYPE" 
     TCGA-44-6145      TCGA-44-6146      TCGA-44-6147      TCGA-44-6148 
"OR5W2 WILD-TYPE" "OR5W2 WILD-TYPE" "OR5W2 WILD-TYPE" "OR5W2 WILD-TYPE" 
     TCGA-44-6774      TCGA-44-6775      TCGA-44-6776      TCGA-44-6777 
"OR5W2 WILD-TYPE" "OR5W2 WILD-TYPE" "OR5W2 WILD-TYPE" "OR5W2 WILD-TYPE" 
     TCGA-44-6778      TCGA-44-6779      TCGA-49-4486      TCGA-49-4487 
"OR5W2 WILD-TYPE" "OR5W2 WILD-TYPE" "OR5W2 WILD-TYPE" "OR5W2 WILD-TYPE" 
     TCGA-49-4488      TCGA-49-4490      TCGA-49-4494      TCGA-49-4501 
"OR5W2 WILD-TYPE" "OR5W2 WILD-TYPE" "OR5W2 WILD-TYPE" "OR5W2 WILD-TYPE" 
     TCGA-49-4505      TCGA-49-4506      TCGA-49-4507      TCGA-49-4510 
"OR5W2 WILD-TYPE" "OR5W2 WILD-TYPE"   "OR5W2 MUTATED" "OR5W2 WILD-TYPE" 
     TCGA-49-4512      TCGA-49-4514      TCGA-49-6742      TCGA-49-6743 
"OR5W2 WILD-TYPE" "OR5W2 WILD-TYPE" "OR5W2 WILD-TYPE" "OR5W2 WILD-TYPE" 
     TCGA-49-6744      TCGA-49-6745      TCGA-50-5044      TCGA-50-5045 
"OR5W2 WILD-TYPE" "OR5W2 WILD-TYPE" "OR5W2 WILD-TYPE" "OR5W2 WILD-TYPE" 
     TCGA-50-5049      TCGA-50-5051      TCGA-50-5055      TCGA-50-5066 
"OR5W2 WILD-TYPE" "OR5W2 WILD-TYPE" "OR5W2 WILD-TYPE" "OR5W2 WILD-TYPE" 
     TCGA-50-5068      TCGA-50-5072      TCGA-50-5930      TCGA-50-5931 
"OR5W2 WILD-TYPE" "OR5W2 WILD-TYPE" "OR5W2 WILD-TYPE" "OR5W2 WILD-TYPE" 
     TCGA-50-5932      TCGA-50-5933      TCGA-50-5935      TCGA-50-5936 
"OR5W2 WILD-TYPE" "OR5W2 WILD-TYPE" "OR5W2 WILD-TYPE" "OR5W2 WILD-TYPE" 
     TCGA-50-5939      TCGA-50-5941      TCGA-50-5942      TCGA-50-5944 
"OR5W2 WILD-TYPE" "OR5W2 WILD-TYPE" "OR5W2 WILD-TYPE" "OR5W2 WILD-TYPE" 
     TCGA-50-5946      TCGA-50-6590      TCGA-50-6591      TCGA-50-6592 
"OR5W2 WILD-TYPE" "OR5W2 WILD-TYPE" "OR5W2 WILD-TYPE"   "OR5W2 MUTATED" 
     TCGA-50-6593      TCGA-50-6594      TCGA-50-6595      TCGA-50-6597 
"OR5W2 WILD-TYPE" "OR5W2 WILD-TYPE" "OR5W2 WILD-TYPE" "OR5W2 WILD-TYPE" 
     TCGA-55-1592      TCGA-55-1594      TCGA-55-1595      TCGA-55-1596 
"OR5W2 WILD-TYPE" "OR5W2 WILD-TYPE"   "OR5W2 MUTATED" "OR5W2 WILD-TYPE" 
     TCGA-55-5899      TCGA-55-6543      TCGA-55-6642      TCGA-55-6712 
"OR5W2 WILD-TYPE" "OR5W2 WILD-TYPE" "OR5W2 WILD-TYPE" "OR5W2 WILD-TYPE" 
     TCGA-64-1676      TCGA-64-1677      TCGA-64-1678      TCGA-64-1680 
"OR5W2 WILD-TYPE" "OR5W2 WILD-TYPE"   "OR5W2 MUTATED" "OR5W2 WILD-TYPE" 
     TCGA-64-5774      TCGA-64-5775      TCGA-64-5778      TCGA-64-5779 
"OR5W2 WILD-TYPE" "OR5W2 WILD-TYPE" "OR5W2 WILD-TYPE" "OR5W2 WILD-TYPE" 
     TCGA-64-5781      TCGA-64-5815      TCGA-67-3770      TCGA-67-3771 
"OR5W2 WILD-TYPE" "OR5W2 WILD-TYPE" "OR5W2 WILD-TYPE" "OR5W2 WILD-TYPE" 
     TCGA-67-3772      TCGA-67-3773      TCGA-67-3774      TCGA-67-6215 
"OR5W2 WILD-TYPE" "OR5W2 WILD-TYPE" "OR5W2 WILD-TYPE" "OR5W2 WILD-TYPE" 
     TCGA-67-6216      TCGA-67-6217      TCGA-71-6725      TCGA-73-4658 
"OR5W2 WILD-TYPE" "OR5W2 WILD-TYPE" "OR5W2 WILD-TYPE" "OR5W2 WILD-TYPE" 
     TCGA-73-4659      TCGA-73-4662      TCGA-73-4666      TCGA-73-4668 
  "OR5W2 MUTATED" "OR5W2 WILD-TYPE" "OR5W2 WILD-TYPE" "OR5W2 WILD-TYPE" 
     TCGA-73-4670      TCGA-73-4675      TCGA-73-4676      TCGA-73-4677 
"OR5W2 WILD-TYPE" "OR5W2 WILD-TYPE" "OR5W2 WILD-TYPE" "OR5W2 WILD-TYPE" 
     TCGA-91-6828      TCGA-91-6829      TCGA-91-6831      TCGA-91-6835 
"OR5W2 WILD-TYPE" "OR5W2 WILD-TYPE" "OR5W2 WILD-TYPE" "OR5W2 WILD-TYPE" 
     TCGA-91-6836 
  "OR5W2 MUTATED" 
     TCGA-05-4249      TCGA-05-4250      TCGA-05-4382      TCGA-05-4384 
"OR5W2 WILD-TYPE" "OR5W2 WILD-TYPE"   "OR5W2 MUTATED" "OR5W2 WILD-TYPE" 
     TCGA-05-4390      TCGA-05-4396      TCGA-05-4397      TCGA-05-4398 
"OR5W2 WILD-TYPE" "OR5W2 WILD-TYPE" "OR5W2 WILD-TYPE" "OR5W2 WILD-TYPE" 
     TCGA-05-4402      TCGA-05-4405      TCGA-05-4415      TCGA-05-4417 
"OR5W2 WILD-TYPE" "OR5W2 WILD-TYPE"   "OR5W2 MUTATED" "OR5W2 WILD-TYPE" 
     TCGA-05-4418      TCGA-05-4420      TCGA-05-4424      TCGA-05-4426 
"OR5W2 WILD-TYPE" "OR5W2 WILD-TYPE" "OR5W2 WILD-TYPE" "OR5W2 WILD-TYPE" 
     TCGA-05-4427      TCGA-05-4430      TCGA-05-4432      TCGA-05-4433 
"OR5W2 WILD-TYPE" "OR5W2 WILD-TYPE" "OR5W2 WILD-TYPE" "OR5W2 WILD-TYPE" 
     TCGA-05-4434      TCGA-05-5420      TCGA-05-5423      TCGA-05-5425 
"OR5W2 WILD-TYPE" "OR5W2 WILD-TYPE" "OR5W2 WILD-TYPE" "OR5W2 WILD-TYPE" 
     TCGA-05-5429      TCGA-05-5715      TCGA-35-3615      TCGA-35-4122 
"OR5W2 WILD-TYPE" "OR5W2 WILD-TYPE" "OR5W2 WILD-TYPE" "OR5W2 WILD-TYPE" 
     TCGA-35-4123      TCGA-35-5375      TCGA-38-4625      TCGA-38-4626 
"OR5W2 WILD-TYPE" "OR5W2 WILD-TYPE" "OR5W2 WILD-TYPE" "OR5W2 WILD-TYPE" 
     TCGA-38-4627      TCGA-38-4628      TCGA-38-4629      TCGA-38-4630 
"OR5W2 WILD-TYPE" "OR5W2 WILD-TYPE" "OR5W2 WILD-TYPE" "OR5W2 WILD-TYPE" 
     TCGA-38-4631      TCGA-38-4632      TCGA-38-6178      TCGA-44-2655 
"OR5W2 WILD-TYPE" "OR5W2 WILD-TYPE" "OR5W2 WILD-TYPE" "OR5W2 WILD-TYPE" 
     TCGA-44-2656      TCGA-44-2657      TCGA-44-2659      TCGA-44-2661 
"OR5W2 WILD-TYPE" "OR5W2 WILD-TYPE" "OR5W2 WILD-TYPE" "OR5W2 WILD-TYPE" 
     TCGA-44-2662      TCGA-44-2665      TCGA-44-2666      TCGA-44-2668 
"OR5W2 WILD-TYPE"   "OR5W2 MUTATED" "OR5W2 WILD-TYPE" "OR5W2 WILD-TYPE" 
     TCGA-44-3396      TCGA-44-3398      TCGA-44-3918      TCGA-44-3919 
"OR5W2 WILD-TYPE" "OR5W2 WILD-TYPE" "OR5W2 WILD-TYPE" "OR5W2 WILD-TYPE" 
     TCGA-44-4112      TCGA-44-5643      TCGA-44-5645      TCGA-44-6144 
"OR5W2 WILD-TYPE" "OR5W2 WILD-TYPE" "OR5W2 WILD-TYPE" "OR5W2 WILD-TYPE" 
     TCGA-44-6145      TCGA-44-6146      TCGA-44-6147      TCGA-44-6148 
"OR5W2 WILD-TYPE" "OR5W2 WILD-TYPE" "OR5W2 WILD-TYPE" "OR5W2 WILD-TYPE" 
     TCGA-44-6774      TCGA-44-6775      TCGA-44-6776      TCGA-44-6777 
"OR5W2 WILD-TYPE" "OR5W2 WILD-TYPE" "OR5W2 WILD-TYPE" "OR5W2 WILD-TYPE" 
     TCGA-44-6778      TCGA-44-6779      TCGA-49-4486      TCGA-49-4487 
"OR5W2 WILD-TYPE" "OR5W2 WILD-TYPE" "OR5W2 WILD-TYPE" "OR5W2 WILD-TYPE" 
     TCGA-49-4488      TCGA-49-4490      TCGA-49-4494      TCGA-49-4501 
"OR5W2 WILD-TYPE" "OR5W2 WILD-TYPE" "OR5W2 WILD-TYPE" "OR5W2 WILD-TYPE" 
     TCGA-49-4505      TCGA-49-4506      TCGA-49-4507      TCGA-49-4510 
"OR5W2 WILD-TYPE" "OR5W2 WILD-TYPE"   "OR5W2 MUTATED" "OR5W2 WILD-TYPE" 
     TCGA-49-4512      TCGA-49-4514      TCGA-49-6742      TCGA-49-6743 
"OR5W2 WILD-TYPE" "OR5W2 WILD-TYPE" "OR5W2 WILD-TYPE" "OR5W2 WILD-TYPE" 
     TCGA-49-6744      TCGA-49-6745      TCGA-50-5044      TCGA-50-5045 
"OR5W2 WILD-TYPE" "OR5W2 WILD-TYPE" "OR5W2 WILD-TYPE" "OR5W2 WILD-TYPE" 
     TCGA-50-5049      TCGA-50-5051      TCGA-50-5055      TCGA-50-5066 
"OR5W2 WILD-TYPE" "OR5W2 WILD-TYPE" "OR5W2 WILD-TYPE" "OR5W2 WILD-TYPE" 
     TCGA-50-5068      TCGA-50-5072      TCGA-50-5930      TCGA-50-5931 
"OR5W2 WILD-TYPE" "OR5W2 WILD-TYPE" "OR5W2 WILD-TYPE" "OR5W2 WILD-TYPE" 
     TCGA-50-5932      TCGA-50-5933      TCGA-50-5935      TCGA-50-5936 
"OR5W2 WILD-TYPE" "OR5W2 WILD-TYPE" "OR5W2 WILD-TYPE" "OR5W2 WILD-TYPE" 
     TCGA-50-5939      TCGA-50-5941      TCGA-50-5942      TCGA-50-5944 
"OR5W2 WILD-TYPE" "OR5W2 WILD-TYPE" "OR5W2 WILD-TYPE" "OR5W2 WILD-TYPE" 
     TCGA-50-5946      TCGA-50-6590      TCGA-50-6591      TCGA-50-6592 
"OR5W2 WILD-TYPE" "OR5W2 WILD-TYPE" "OR5W2 WILD-TYPE"   "OR5W2 MUTATED" 
     TCGA-50-6593      TCGA-50-6594      TCGA-50-6595      TCGA-50-6597 
"OR5W2 WILD-TYPE" "OR5W2 WILD-TYPE" "OR5W2 WILD-TYPE" "OR5W2 WILD-TYPE" 
     TCGA-55-1592      TCGA-55-1594      TCGA-55-1595      TCGA-55-1596 
"OR5W2 WILD-TYPE" "OR5W2 WILD-TYPE"   "OR5W2 MUTATED" "OR5W2 WILD-TYPE" 
     TCGA-55-5899      TCGA-55-6543      TCGA-55-6642      TCGA-55-6712 
"OR5W2 WILD-TYPE" "OR5W2 WILD-TYPE" "OR5W2 WILD-TYPE" "OR5W2 WILD-TYPE" 
     TCGA-64-1676      TCGA-64-1677      TCGA-64-1678      TCGA-64-1680 
"OR5W2 WILD-TYPE" "OR5W2 WILD-TYPE"   "OR5W2 MUTATED" "OR5W2 WILD-TYPE" 
     TCGA-64-5774      TCGA-64-5775      TCGA-64-5778      TCGA-64-5779 
"OR5W2 WILD-TYPE" "OR5W2 WILD-TYPE" "OR5W2 WILD-TYPE" "OR5W2 WILD-TYPE" 
     TCGA-64-5781      TCGA-64-5815      TCGA-67-3770      TCGA-67-3771 
"OR5W2 WILD-TYPE" "OR5W2 WILD-TYPE" "OR5W2 WILD-TYPE" "OR5W2 WILD-TYPE" 
     TCGA-67-3772      TCGA-67-3773      TCGA-67-3774      TCGA-67-6215 
"OR5W2 WILD-TYPE" "OR5W2 WILD-TYPE" "OR5W2 WILD-TYPE" "OR5W2 WILD-TYPE" 
     TCGA-67-6216      TCGA-67-6217      TCGA-71-6725      TCGA-73-4658 
"OR5W2 WILD-TYPE" "OR5W2 WILD-TYPE" "OR5W2 WILD-TYPE" "OR5W2 WILD-TYPE" 
     TCGA-73-4659      TCGA-73-4662      TCGA-73-4666      TCGA-73-4668 
  "OR5W2 MUTATED" "OR5W2 WILD-TYPE" "OR5W2 WILD-TYPE" "OR5W2 WILD-TYPE" 
     TCGA-73-4670      TCGA-73-4675      TCGA-73-4676      TCGA-73-4677 
"OR5W2 WILD-TYPE" "OR5W2 WILD-TYPE" "OR5W2 WILD-TYPE" "OR5W2 WILD-TYPE" 
     TCGA-91-6828      TCGA-91-6829      TCGA-91-6831      TCGA-91-6835 
"OR5W2 WILD-TYPE" "OR5W2 WILD-TYPE" "OR5W2 WILD-TYPE" "OR5W2 WILD-TYPE" 
     TCGA-91-6836 
  "OR5W2 MUTATED" 
[1] "hr=" "1.4"
D33V2, continuous
D33V3, binary
[1] "tbl2"
                 cls
clus              [,1] [,2]
  OR5W2 MUTATED      6    3
  OR5W2 WILD-TYPE   87   76
        clus
vv       OR5W2 MUTATED OR5W2 WILD-TYPE
  FEMALE             6              87
  MALE               3              76
D33V4, continuous
[1] "Remove cluster labels:" "OR5W2 MUTATED"         
clus
  OR5W2 MUTATED OR5W2 WILD-TYPE 
              1              11 
     TCGA-35-4122      TCGA-35-4123      TCGA-35-5375      TCGA-64-1677 
"OR5W2 WILD-TYPE" "OR5W2 WILD-TYPE" "OR5W2 WILD-TYPE" "OR5W2 WILD-TYPE" 
     TCGA-64-5778      TCGA-71-6725      TCGA-73-4662      TCGA-73-4666 
"OR5W2 WILD-TYPE" "OR5W2 WILD-TYPE" "OR5W2 WILD-TYPE" "OR5W2 WILD-TYPE" 
     TCGA-73-4668      TCGA-73-4676      TCGA-75-5122 
"OR5W2 WILD-TYPE" "OR5W2 WILD-TYPE" "OR5W2 WILD-TYPE" 
D33V5, multiclass
D33V6, multiclass
    clus
vv   OR5W2 MUTATED OR5W2 WILD-TYPE
  T1             1              40
  T2             6             102
  T3             1              13
  T4             1               7
D33V7, multiclass
       clus
vv      OR5W2 MUTATED OR5W2 WILD-TYPE
  N0                5              90
  N1                2              35
  N2+N3             2              33
D33V8, multiclass
    clus
vv   OR5W2 MUTATED OR5W2 WILD-TYPE
  M0             8             129
  M1             0               9
  MX             1              21
D33V9, multiclass
     clus
vv    OR5W2 MUTATED OR5W2 WILD-TYPE
  I               4              84
  II              2              31
  III             3              36
  IV              0               9
D33V10, binary
[1] "tbl2"
                 cls
clus              [,1] [,2]
  OR5W2 MUTATED      1    8
  OR5W2 WILD-TYPE   15  148
     clus
vv    OR5W2 MUTATED OR5W2 WILD-TYPE
  NO              1              15
  YES             8             148
D33V11, continuous
D33V12, continuous
D33V13, multiclass
                                             clus
vv                                            OR5W2 MUTATED OR5W2 WILD-TYPE
  CURRENT REFORMED SMOKER FOR < OR = 15 YEARS             5              57
  CURRENT REFORMED SMOKER FOR > 15 YEARS                  2              44
  CURRENT SMOKER                                          1              27
  LIFELONG NON-SMOKER                                     1              23
D33V14, continuous

Clustering(34) Variable = OR8H2 MUTATION ANALYSIS
D34V1, survival
                 sevent
clus2              0  1
  OR8H2 MUTATED    6  3
  OR8H2 WILD-TYPE 93 47
  OR8H2 MUTATED OR8H2 WILD-TYPE 
              9             140 
  OR8H2 MUTATED OR8H2 WILD-TYPE 
              3              47 
$`OR8H2 MUTATED`
TCGA-05-4396 TCGA-05-4427 TCGA-35-4122 TCGA-38-4629 TCGA-44-6145 TCGA-49-4507 
        9.96        26.01         7.36        28.37         3.35         8.81 
TCGA-50-5072 TCGA-64-5778 TCGA-64-5781 
        8.05        30.44        39.52 

$`OR8H2 WILD-TYPE`
TCGA-05-4249 TCGA-05-4250 TCGA-05-4382 TCGA-05-4384 TCGA-05-4390 TCGA-05-4397 
       38.07         3.98        19.92        14.01        37.02        24.03 
TCGA-05-4398 TCGA-05-4402 TCGA-05-4405 TCGA-05-4415 TCGA-05-4417 TCGA-05-4418 
       47.05         8.02        20.05         2.96        14.93         8.98 
TCGA-05-4420 TCGA-05-4424 TCGA-05-4426 TCGA-05-4430 TCGA-05-4432 TCGA-05-4433 
       29.95        30.02        26.01        25.02        25.02        24.00 
TCGA-05-4434 TCGA-05-5420 TCGA-05-5423 TCGA-05-5425 TCGA-05-5429 TCGA-05-5715 
       15.02         1.02         4.96         2.96         0.99         2.04 
TCGA-35-3615 TCGA-35-4123 TCGA-35-5375 TCGA-38-4625 TCGA-38-4626 TCGA-38-4627 
        0.46         5.95         8.68        47.61        85.32        37.71 
TCGA-38-4628 TCGA-38-4630 TCGA-38-4631 TCGA-38-4632 TCGA-38-6178 TCGA-44-2655 
       49.02        35.28        11.64        44.61         5.19        18.87 
TCGA-44-2656 TCGA-44-2657 TCGA-44-2659 TCGA-44-2661 TCGA-44-2662 TCGA-44-2665 
       19.10        13.15        17.39         3.39        15.78        13.15 
TCGA-44-2666 TCGA-44-2668 TCGA-44-3396 TCGA-44-3398 TCGA-44-3918 TCGA-44-3919 
        3.19         8.09        10.22         8.32         6.44         6.21 
TCGA-44-4112 TCGA-44-5643 TCGA-44-5645 TCGA-44-6144 TCGA-44-6146 TCGA-44-6147 
        4.60         3.48         6.84         0.30         9.93         7.76 
TCGA-44-6148 TCGA-44-6774 TCGA-44-6775 TCGA-44-6776 TCGA-44-6777 TCGA-44-6778 
        3.12         5.42         2.70        63.72        32.45        36.49 
TCGA-44-6779 TCGA-49-4486 TCGA-49-4487 TCGA-49-4488 TCGA-49-4490 TCGA-49-4494 
       16.41        76.21        28.11        28.57        12.66        35.54 
TCGA-49-4501 TCGA-49-4505 TCGA-49-4506 TCGA-49-4510 TCGA-49-4512 TCGA-49-4514 
       46.72        14.07        32.84        29.46        29.75        43.20 
TCGA-49-6742 TCGA-49-6743 TCGA-49-6744 TCGA-49-6745 TCGA-50-5044 TCGA-50-5045 
       15.02        12.13        12.99         4.93        20.48        71.47 
TCGA-50-5049 TCGA-50-5051 TCGA-50-5055 TCGA-50-5066 TCGA-50-5068 TCGA-50-5930 
       48.82        14.96        25.81         9.76        49.28         9.27 
TCGA-50-5931 TCGA-50-5932 TCGA-50-5933 TCGA-50-5935 TCGA-50-5936 TCGA-50-5939 
        8.78        35.87        77.88        21.47         8.45        15.12 
TCGA-50-5941 TCGA-50-5942 TCGA-50-5944 TCGA-50-5946 TCGA-50-6590 TCGA-50-6591 
        9.37         4.44        12.26        11.47        42.31         3.88 
TCGA-50-6592 TCGA-50-6593 TCGA-50-6594 TCGA-50-6595 TCGA-50-6597 TCGA-55-1592 
       25.51        11.05        12.16         6.21        33.37        23.05 
TCGA-55-1594 TCGA-55-1595 TCGA-55-1596 TCGA-55-5899 TCGA-55-6543 TCGA-55-6642 
       38.73        48.62        45.17         2.86         0.07        32.61 
TCGA-55-6712 TCGA-64-1676 TCGA-64-1677 TCGA-64-1678 TCGA-64-1680 TCGA-64-5774 
        0.79        56.81        20.65        39.09        37.02        83.84 
TCGA-64-5775 TCGA-64-5779 TCGA-64-5815 TCGA-67-3770 TCGA-67-3771 TCGA-67-3772 
        0.10        16.67         7.33         0.99         1.97         0.59 
TCGA-67-3773 TCGA-67-3774 TCGA-67-6215 TCGA-67-6216 TCGA-67-6217 TCGA-71-6725 
        2.04         0.59         0.89         0.69        13.87         2.01 
TCGA-73-4658 TCGA-73-4659 TCGA-73-4662 TCGA-73-4666 TCGA-73-4668 TCGA-73-4670 
       52.57        23.38        29.95        20.28        15.35         0.46 
TCGA-73-4675 TCGA-73-4676 TCGA-73-4677 TCGA-91-6828 TCGA-91-6829 TCGA-91-6831 
        1.32         4.01         1.25         1.22        41.33         1.28 
TCGA-91-6835 TCGA-91-6836 
        1.15         0.36 

  OR8H2 MUTATED OR8H2 WILD-TYPE 
           3.35            0.07 
  OR8H2 MUTATED OR8H2 WILD-TYPE 
          39.52           85.32 
  OR8H2 MUTATED OR8H2 WILD-TYPE 
           9.96           13.94 
[1] "3.4 - 39.5 (10.0)" "0.1 - 85.3 (13.9)"
     TCGA-05-4249      TCGA-05-4250      TCGA-05-4382      TCGA-05-4384 
"OR8H2 WILD-TYPE" "OR8H2 WILD-TYPE" "OR8H2 WILD-TYPE" "OR8H2 WILD-TYPE" 
     TCGA-05-4390      TCGA-05-4396      TCGA-05-4397      TCGA-05-4398 
"OR8H2 WILD-TYPE"   "OR8H2 MUTATED" "OR8H2 WILD-TYPE" "OR8H2 WILD-TYPE" 
     TCGA-05-4402      TCGA-05-4405      TCGA-05-4415      TCGA-05-4417 
"OR8H2 WILD-TYPE" "OR8H2 WILD-TYPE" "OR8H2 WILD-TYPE" "OR8H2 WILD-TYPE" 
     TCGA-05-4418      TCGA-05-4420      TCGA-05-4424      TCGA-05-4426 
"OR8H2 WILD-TYPE" "OR8H2 WILD-TYPE" "OR8H2 WILD-TYPE" "OR8H2 WILD-TYPE" 
     TCGA-05-4427      TCGA-05-4430      TCGA-05-4432      TCGA-05-4433 
  "OR8H2 MUTATED" "OR8H2 WILD-TYPE" "OR8H2 WILD-TYPE" "OR8H2 WILD-TYPE" 
     TCGA-05-4434      TCGA-05-5420      TCGA-05-5423      TCGA-05-5425 
"OR8H2 WILD-TYPE" "OR8H2 WILD-TYPE" "OR8H2 WILD-TYPE" "OR8H2 WILD-TYPE" 
     TCGA-05-5429      TCGA-05-5715      TCGA-35-3615      TCGA-35-4122 
"OR8H2 WILD-TYPE" "OR8H2 WILD-TYPE" "OR8H2 WILD-TYPE"   "OR8H2 MUTATED" 
     TCGA-35-4123      TCGA-35-5375      TCGA-38-4625      TCGA-38-4626 
"OR8H2 WILD-TYPE" "OR8H2 WILD-TYPE" "OR8H2 WILD-TYPE" "OR8H2 WILD-TYPE" 
     TCGA-38-4627      TCGA-38-4628      TCGA-38-4629      TCGA-38-4630 
"OR8H2 WILD-TYPE" "OR8H2 WILD-TYPE"   "OR8H2 MUTATED" "OR8H2 WILD-TYPE" 
     TCGA-38-4631      TCGA-38-4632      TCGA-38-6178      TCGA-44-2655 
"OR8H2 WILD-TYPE" "OR8H2 WILD-TYPE" "OR8H2 WILD-TYPE" "OR8H2 WILD-TYPE" 
     TCGA-44-2656      TCGA-44-2657      TCGA-44-2659      TCGA-44-2661 
"OR8H2 WILD-TYPE" "OR8H2 WILD-TYPE" "OR8H2 WILD-TYPE" "OR8H2 WILD-TYPE" 
     TCGA-44-2662      TCGA-44-2665      TCGA-44-2666      TCGA-44-2668 
"OR8H2 WILD-TYPE" "OR8H2 WILD-TYPE" "OR8H2 WILD-TYPE" "OR8H2 WILD-TYPE" 
     TCGA-44-3396      TCGA-44-3398      TCGA-44-3918      TCGA-44-3919 
"OR8H2 WILD-TYPE" "OR8H2 WILD-TYPE" "OR8H2 WILD-TYPE" "OR8H2 WILD-TYPE" 
     TCGA-44-4112      TCGA-44-5643      TCGA-44-5645      TCGA-44-6144 
"OR8H2 WILD-TYPE" "OR8H2 WILD-TYPE" "OR8H2 WILD-TYPE" "OR8H2 WILD-TYPE" 
     TCGA-44-6145      TCGA-44-6146      TCGA-44-6147      TCGA-44-6148 
  "OR8H2 MUTATED" "OR8H2 WILD-TYPE" "OR8H2 WILD-TYPE" "OR8H2 WILD-TYPE" 
     TCGA-44-6774      TCGA-44-6775      TCGA-44-6776      TCGA-44-6777 
"OR8H2 WILD-TYPE" "OR8H2 WILD-TYPE" "OR8H2 WILD-TYPE" "OR8H2 WILD-TYPE" 
     TCGA-44-6778      TCGA-44-6779      TCGA-49-4486      TCGA-49-4487 
"OR8H2 WILD-TYPE" "OR8H2 WILD-TYPE" "OR8H2 WILD-TYPE" "OR8H2 WILD-TYPE" 
     TCGA-49-4488      TCGA-49-4490      TCGA-49-4494      TCGA-49-4501 
"OR8H2 WILD-TYPE" "OR8H2 WILD-TYPE" "OR8H2 WILD-TYPE" "OR8H2 WILD-TYPE" 
     TCGA-49-4505      TCGA-49-4506      TCGA-49-4507      TCGA-49-4510 
"OR8H2 WILD-TYPE" "OR8H2 WILD-TYPE"   "OR8H2 MUTATED" "OR8H2 WILD-TYPE" 
     TCGA-49-4512      TCGA-49-4514      TCGA-49-6742      TCGA-49-6743 
"OR8H2 WILD-TYPE" "OR8H2 WILD-TYPE" "OR8H2 WILD-TYPE" "OR8H2 WILD-TYPE" 
     TCGA-49-6744      TCGA-49-6745      TCGA-50-5044      TCGA-50-5045 
"OR8H2 WILD-TYPE" "OR8H2 WILD-TYPE" "OR8H2 WILD-TYPE" "OR8H2 WILD-TYPE" 
     TCGA-50-5049      TCGA-50-5051      TCGA-50-5055      TCGA-50-5066 
"OR8H2 WILD-TYPE" "OR8H2 WILD-TYPE" "OR8H2 WILD-TYPE" "OR8H2 WILD-TYPE" 
     TCGA-50-5068      TCGA-50-5072      TCGA-50-5930      TCGA-50-5931 
"OR8H2 WILD-TYPE"   "OR8H2 MUTATED" "OR8H2 WILD-TYPE" "OR8H2 WILD-TYPE" 
     TCGA-50-5932      TCGA-50-5933      TCGA-50-5935      TCGA-50-5936 
"OR8H2 WILD-TYPE" "OR8H2 WILD-TYPE" "OR8H2 WILD-TYPE" "OR8H2 WILD-TYPE" 
     TCGA-50-5939      TCGA-50-5941      TCGA-50-5942      TCGA-50-5944 
"OR8H2 WILD-TYPE" "OR8H2 WILD-TYPE" "OR8H2 WILD-TYPE" "OR8H2 WILD-TYPE" 
     TCGA-50-5946      TCGA-50-6590      TCGA-50-6591      TCGA-50-6592 
"OR8H2 WILD-TYPE" "OR8H2 WILD-TYPE" "OR8H2 WILD-TYPE" "OR8H2 WILD-TYPE" 
     TCGA-50-6593      TCGA-50-6594      TCGA-50-6595      TCGA-50-6597 
"OR8H2 WILD-TYPE" "OR8H2 WILD-TYPE" "OR8H2 WILD-TYPE" "OR8H2 WILD-TYPE" 
     TCGA-55-1592      TCGA-55-1594      TCGA-55-1595      TCGA-55-1596 
"OR8H2 WILD-TYPE" "OR8H2 WILD-TYPE" "OR8H2 WILD-TYPE" "OR8H2 WILD-TYPE" 
     TCGA-55-5899      TCGA-55-6543      TCGA-55-6642      TCGA-55-6712 
"OR8H2 WILD-TYPE" "OR8H2 WILD-TYPE" "OR8H2 WILD-TYPE" "OR8H2 WILD-TYPE" 
     TCGA-64-1676      TCGA-64-1677      TCGA-64-1678      TCGA-64-1680 
"OR8H2 WILD-TYPE" "OR8H2 WILD-TYPE" "OR8H2 WILD-TYPE" "OR8H2 WILD-TYPE" 
     TCGA-64-5774      TCGA-64-5775      TCGA-64-5778      TCGA-64-5779 
"OR8H2 WILD-TYPE" "OR8H2 WILD-TYPE"   "OR8H2 MUTATED" "OR8H2 WILD-TYPE" 
     TCGA-64-5781      TCGA-64-5815      TCGA-67-3770      TCGA-67-3771 
  "OR8H2 MUTATED" "OR8H2 WILD-TYPE" "OR8H2 WILD-TYPE" "OR8H2 WILD-TYPE" 
     TCGA-67-3772      TCGA-67-3773      TCGA-67-3774      TCGA-67-6215 
"OR8H2 WILD-TYPE" "OR8H2 WILD-TYPE" "OR8H2 WILD-TYPE" "OR8H2 WILD-TYPE" 
     TCGA-67-6216      TCGA-67-6217      TCGA-71-6725      TCGA-73-4658 
"OR8H2 WILD-TYPE" "OR8H2 WILD-TYPE" "OR8H2 WILD-TYPE" "OR8H2 WILD-TYPE" 
     TCGA-73-4659      TCGA-73-4662      TCGA-73-4666      TCGA-73-4668 
"OR8H2 WILD-TYPE" "OR8H2 WILD-TYPE" "OR8H2 WILD-TYPE" "OR8H2 WILD-TYPE" 
     TCGA-73-4670      TCGA-73-4675      TCGA-73-4676      TCGA-73-4677 
"OR8H2 WILD-TYPE" "OR8H2 WILD-TYPE" "OR8H2 WILD-TYPE" "OR8H2 WILD-TYPE" 
     TCGA-91-6828      TCGA-91-6829      TCGA-91-6831      TCGA-91-6835 
"OR8H2 WILD-TYPE" "OR8H2 WILD-TYPE" "OR8H2 WILD-TYPE" "OR8H2 WILD-TYPE" 
     TCGA-91-6836 
"OR8H2 WILD-TYPE" 
     TCGA-05-4249      TCGA-05-4250      TCGA-05-4382      TCGA-05-4384 
"OR8H2 WILD-TYPE" "OR8H2 WILD-TYPE" "OR8H2 WILD-TYPE" "OR8H2 WILD-TYPE" 
     TCGA-05-4390      TCGA-05-4396      TCGA-05-4397      TCGA-05-4398 
"OR8H2 WILD-TYPE"   "OR8H2 MUTATED" "OR8H2 WILD-TYPE" "OR8H2 WILD-TYPE" 
     TCGA-05-4402      TCGA-05-4405      TCGA-05-4415      TCGA-05-4417 
"OR8H2 WILD-TYPE" "OR8H2 WILD-TYPE" "OR8H2 WILD-TYPE" "OR8H2 WILD-TYPE" 
     TCGA-05-4418      TCGA-05-4420      TCGA-05-4424      TCGA-05-4426 
"OR8H2 WILD-TYPE" "OR8H2 WILD-TYPE" "OR8H2 WILD-TYPE" "OR8H2 WILD-TYPE" 
     TCGA-05-4427      TCGA-05-4430      TCGA-05-4432      TCGA-05-4433 
  "OR8H2 MUTATED" "OR8H2 WILD-TYPE" "OR8H2 WILD-TYPE" "OR8H2 WILD-TYPE" 
     TCGA-05-4434      TCGA-05-5420      TCGA-05-5423      TCGA-05-5425 
"OR8H2 WILD-TYPE" "OR8H2 WILD-TYPE" "OR8H2 WILD-TYPE" "OR8H2 WILD-TYPE" 
     TCGA-05-5429      TCGA-05-5715      TCGA-35-3615      TCGA-35-4122 
"OR8H2 WILD-TYPE" "OR8H2 WILD-TYPE" "OR8H2 WILD-TYPE"   "OR8H2 MUTATED" 
     TCGA-35-4123      TCGA-35-5375      TCGA-38-4625      TCGA-38-4626 
"OR8H2 WILD-TYPE" "OR8H2 WILD-TYPE" "OR8H2 WILD-TYPE" "OR8H2 WILD-TYPE" 
     TCGA-38-4627      TCGA-38-4628      TCGA-38-4629      TCGA-38-4630 
"OR8H2 WILD-TYPE" "OR8H2 WILD-TYPE"   "OR8H2 MUTATED" "OR8H2 WILD-TYPE" 
     TCGA-38-4631      TCGA-38-4632      TCGA-38-6178      TCGA-44-2655 
"OR8H2 WILD-TYPE" "OR8H2 WILD-TYPE" "OR8H2 WILD-TYPE" "OR8H2 WILD-TYPE" 
     TCGA-44-2656      TCGA-44-2657      TCGA-44-2659      TCGA-44-2661 
"OR8H2 WILD-TYPE" "OR8H2 WILD-TYPE" "OR8H2 WILD-TYPE" "OR8H2 WILD-TYPE" 
     TCGA-44-2662      TCGA-44-2665      TCGA-44-2666      TCGA-44-2668 
"OR8H2 WILD-TYPE" "OR8H2 WILD-TYPE" "OR8H2 WILD-TYPE" "OR8H2 WILD-TYPE" 
     TCGA-44-3396      TCGA-44-3398      TCGA-44-3918      TCGA-44-3919 
"OR8H2 WILD-TYPE" "OR8H2 WILD-TYPE" "OR8H2 WILD-TYPE" "OR8H2 WILD-TYPE" 
     TCGA-44-4112      TCGA-44-5643      TCGA-44-5645      TCGA-44-6144 
"OR8H2 WILD-TYPE" "OR8H2 WILD-TYPE" "OR8H2 WILD-TYPE" "OR8H2 WILD-TYPE" 
     TCGA-44-6145      TCGA-44-6146      TCGA-44-6147      TCGA-44-6148 
  "OR8H2 MUTATED" "OR8H2 WILD-TYPE" "OR8H2 WILD-TYPE" "OR8H2 WILD-TYPE" 
     TCGA-44-6774      TCGA-44-6775      TCGA-44-6776      TCGA-44-6777 
"OR8H2 WILD-TYPE" "OR8H2 WILD-TYPE" "OR8H2 WILD-TYPE" "OR8H2 WILD-TYPE" 
     TCGA-44-6778      TCGA-44-6779      TCGA-49-4486      TCGA-49-4487 
"OR8H2 WILD-TYPE" "OR8H2 WILD-TYPE" "OR8H2 WILD-TYPE" "OR8H2 WILD-TYPE" 
     TCGA-49-4488      TCGA-49-4490      TCGA-49-4494      TCGA-49-4501 
"OR8H2 WILD-TYPE" "OR8H2 WILD-TYPE" "OR8H2 WILD-TYPE" "OR8H2 WILD-TYPE" 
     TCGA-49-4505      TCGA-49-4506      TCGA-49-4507      TCGA-49-4510 
"OR8H2 WILD-TYPE" "OR8H2 WILD-TYPE"   "OR8H2 MUTATED" "OR8H2 WILD-TYPE" 
     TCGA-49-4512      TCGA-49-4514      TCGA-49-6742      TCGA-49-6743 
"OR8H2 WILD-TYPE" "OR8H2 WILD-TYPE" "OR8H2 WILD-TYPE" "OR8H2 WILD-TYPE" 
     TCGA-49-6744      TCGA-49-6745      TCGA-50-5044      TCGA-50-5045 
"OR8H2 WILD-TYPE" "OR8H2 WILD-TYPE" "OR8H2 WILD-TYPE" "OR8H2 WILD-TYPE" 
     TCGA-50-5049      TCGA-50-5051      TCGA-50-5055      TCGA-50-5066 
"OR8H2 WILD-TYPE" "OR8H2 WILD-TYPE" "OR8H2 WILD-TYPE" "OR8H2 WILD-TYPE" 
     TCGA-50-5068      TCGA-50-5072      TCGA-50-5930      TCGA-50-5931 
"OR8H2 WILD-TYPE"   "OR8H2 MUTATED" "OR8H2 WILD-TYPE" "OR8H2 WILD-TYPE" 
     TCGA-50-5932      TCGA-50-5933      TCGA-50-5935      TCGA-50-5936 
"OR8H2 WILD-TYPE" "OR8H2 WILD-TYPE" "OR8H2 WILD-TYPE" "OR8H2 WILD-TYPE" 
     TCGA-50-5939      TCGA-50-5941      TCGA-50-5942      TCGA-50-5944 
"OR8H2 WILD-TYPE" "OR8H2 WILD-TYPE" "OR8H2 WILD-TYPE" "OR8H2 WILD-TYPE" 
     TCGA-50-5946      TCGA-50-6590      TCGA-50-6591      TCGA-50-6592 
"OR8H2 WILD-TYPE" "OR8H2 WILD-TYPE" "OR8H2 WILD-TYPE" "OR8H2 WILD-TYPE" 
     TCGA-50-6593      TCGA-50-6594      TCGA-50-6595      TCGA-50-6597 
"OR8H2 WILD-TYPE" "OR8H2 WILD-TYPE" "OR8H2 WILD-TYPE" "OR8H2 WILD-TYPE" 
     TCGA-55-1592      TCGA-55-1594      TCGA-55-1595      TCGA-55-1596 
"OR8H2 WILD-TYPE" "OR8H2 WILD-TYPE" "OR8H2 WILD-TYPE" "OR8H2 WILD-TYPE" 
     TCGA-55-5899      TCGA-55-6543      TCGA-55-6642      TCGA-55-6712 
"OR8H2 WILD-TYPE" "OR8H2 WILD-TYPE" "OR8H2 WILD-TYPE" "OR8H2 WILD-TYPE" 
     TCGA-64-1676      TCGA-64-1677      TCGA-64-1678      TCGA-64-1680 
"OR8H2 WILD-TYPE" "OR8H2 WILD-TYPE" "OR8H2 WILD-TYPE" "OR8H2 WILD-TYPE" 
     TCGA-64-5774      TCGA-64-5775      TCGA-64-5778      TCGA-64-5779 
"OR8H2 WILD-TYPE" "OR8H2 WILD-TYPE"   "OR8H2 MUTATED" "OR8H2 WILD-TYPE" 
     TCGA-64-5781      TCGA-64-5815      TCGA-67-3770      TCGA-67-3771 
  "OR8H2 MUTATED" "OR8H2 WILD-TYPE" "OR8H2 WILD-TYPE" "OR8H2 WILD-TYPE" 
     TCGA-67-3772      TCGA-67-3773      TCGA-67-3774      TCGA-67-6215 
"OR8H2 WILD-TYPE" "OR8H2 WILD-TYPE" "OR8H2 WILD-TYPE" "OR8H2 WILD-TYPE" 
     TCGA-67-6216      TCGA-67-6217      TCGA-71-6725      TCGA-73-4658 
"OR8H2 WILD-TYPE" "OR8H2 WILD-TYPE" "OR8H2 WILD-TYPE" "OR8H2 WILD-TYPE" 
     TCGA-73-4659      TCGA-73-4662      TCGA-73-4666      TCGA-73-4668 
"OR8H2 WILD-TYPE" "OR8H2 WILD-TYPE" "OR8H2 WILD-TYPE" "OR8H2 WILD-TYPE" 
     TCGA-73-4670      TCGA-73-4675      TCGA-73-4676      TCGA-73-4677 
"OR8H2 WILD-TYPE" "OR8H2 WILD-TYPE" "OR8H2 WILD-TYPE" "OR8H2 WILD-TYPE" 
     TCGA-91-6828      TCGA-91-6829      TCGA-91-6831      TCGA-91-6835 
"OR8H2 WILD-TYPE" "OR8H2 WILD-TYPE" "OR8H2 WILD-TYPE" "OR8H2 WILD-TYPE" 
     TCGA-91-6836 
"OR8H2 WILD-TYPE" 
     TCGA-05-4249      TCGA-05-4250      TCGA-05-4382      TCGA-05-4384 
"OR8H2 WILD-TYPE" "OR8H2 WILD-TYPE" "OR8H2 WILD-TYPE" "OR8H2 WILD-TYPE" 
     TCGA-05-4390      TCGA-05-4396      TCGA-05-4397      TCGA-05-4398 
"OR8H2 WILD-TYPE"   "OR8H2 MUTATED" "OR8H2 WILD-TYPE" "OR8H2 WILD-TYPE" 
     TCGA-05-4402      TCGA-05-4405      TCGA-05-4415      TCGA-05-4417 
"OR8H2 WILD-TYPE" "OR8H2 WILD-TYPE" "OR8H2 WILD-TYPE" "OR8H2 WILD-TYPE" 
     TCGA-05-4418      TCGA-05-4420      TCGA-05-4424      TCGA-05-4426 
"OR8H2 WILD-TYPE" "OR8H2 WILD-TYPE" "OR8H2 WILD-TYPE" "OR8H2 WILD-TYPE" 
     TCGA-05-4427      TCGA-05-4430      TCGA-05-4432      TCGA-05-4433 
  "OR8H2 MUTATED" "OR8H2 WILD-TYPE" "OR8H2 WILD-TYPE" "OR8H2 WILD-TYPE" 
     TCGA-05-4434      TCGA-05-5420      TCGA-05-5423      TCGA-05-5425 
"OR8H2 WILD-TYPE" "OR8H2 WILD-TYPE" "OR8H2 WILD-TYPE" "OR8H2 WILD-TYPE" 
     TCGA-05-5429      TCGA-05-5715      TCGA-35-3615      TCGA-35-4122 
"OR8H2 WILD-TYPE" "OR8H2 WILD-TYPE" "OR8H2 WILD-TYPE"   "OR8H2 MUTATED" 
     TCGA-35-4123      TCGA-35-5375      TCGA-38-4625      TCGA-38-4626 
"OR8H2 WILD-TYPE" "OR8H2 WILD-TYPE" "OR8H2 WILD-TYPE" "OR8H2 WILD-TYPE" 
     TCGA-38-4627      TCGA-38-4628      TCGA-38-4629      TCGA-38-4630 
"OR8H2 WILD-TYPE" "OR8H2 WILD-TYPE"   "OR8H2 MUTATED" "OR8H2 WILD-TYPE" 
     TCGA-38-4631      TCGA-38-4632      TCGA-38-6178      TCGA-44-2655 
"OR8H2 WILD-TYPE" "OR8H2 WILD-TYPE" "OR8H2 WILD-TYPE" "OR8H2 WILD-TYPE" 
     TCGA-44-2656      TCGA-44-2657      TCGA-44-2659      TCGA-44-2661 
"OR8H2 WILD-TYPE" "OR8H2 WILD-TYPE" "OR8H2 WILD-TYPE" "OR8H2 WILD-TYPE" 
     TCGA-44-2662      TCGA-44-2665      TCGA-44-2666      TCGA-44-2668 
"OR8H2 WILD-TYPE" "OR8H2 WILD-TYPE" "OR8H2 WILD-TYPE" "OR8H2 WILD-TYPE" 
     TCGA-44-3396      TCGA-44-3398      TCGA-44-3918      TCGA-44-3919 
"OR8H2 WILD-TYPE" "OR8H2 WILD-TYPE" "OR8H2 WILD-TYPE" "OR8H2 WILD-TYPE" 
     TCGA-44-4112      TCGA-44-5643      TCGA-44-5645      TCGA-44-6144 
"OR8H2 WILD-TYPE" "OR8H2 WILD-TYPE" "OR8H2 WILD-TYPE" "OR8H2 WILD-TYPE" 
     TCGA-44-6145      TCGA-44-6146      TCGA-44-6147      TCGA-44-6148 
  "OR8H2 MUTATED" "OR8H2 WILD-TYPE" "OR8H2 WILD-TYPE" "OR8H2 WILD-TYPE" 
     TCGA-44-6774      TCGA-44-6775      TCGA-44-6776      TCGA-44-6777 
"OR8H2 WILD-TYPE" "OR8H2 WILD-TYPE" "OR8H2 WILD-TYPE" "OR8H2 WILD-TYPE" 
     TCGA-44-6778      TCGA-44-6779      TCGA-49-4486      TCGA-49-4487 
"OR8H2 WILD-TYPE" "OR8H2 WILD-TYPE" "OR8H2 WILD-TYPE" "OR8H2 WILD-TYPE" 
     TCGA-49-4488      TCGA-49-4490      TCGA-49-4494      TCGA-49-4501 
"OR8H2 WILD-TYPE" "OR8H2 WILD-TYPE" "OR8H2 WILD-TYPE" "OR8H2 WILD-TYPE" 
     TCGA-49-4505      TCGA-49-4506      TCGA-49-4507      TCGA-49-4510 
"OR8H2 WILD-TYPE" "OR8H2 WILD-TYPE"   "OR8H2 MUTATED" "OR8H2 WILD-TYPE" 
     TCGA-49-4512      TCGA-49-4514      TCGA-49-6742      TCGA-49-6743 
"OR8H2 WILD-TYPE" "OR8H2 WILD-TYPE" "OR8H2 WILD-TYPE" "OR8H2 WILD-TYPE" 
     TCGA-49-6744      TCGA-49-6745      TCGA-50-5044      TCGA-50-5045 
"OR8H2 WILD-TYPE" "OR8H2 WILD-TYPE" "OR8H2 WILD-TYPE" "OR8H2 WILD-TYPE" 
     TCGA-50-5049      TCGA-50-5051      TCGA-50-5055      TCGA-50-5066 
"OR8H2 WILD-TYPE" "OR8H2 WILD-TYPE" "OR8H2 WILD-TYPE" "OR8H2 WILD-TYPE" 
     TCGA-50-5068      TCGA-50-5072      TCGA-50-5930      TCGA-50-5931 
"OR8H2 WILD-TYPE"   "OR8H2 MUTATED" "OR8H2 WILD-TYPE" "OR8H2 WILD-TYPE" 
     TCGA-50-5932      TCGA-50-5933      TCGA-50-5935      TCGA-50-5936 
"OR8H2 WILD-TYPE" "OR8H2 WILD-TYPE" "OR8H2 WILD-TYPE" "OR8H2 WILD-TYPE" 
     TCGA-50-5939      TCGA-50-5941      TCGA-50-5942      TCGA-50-5944 
"OR8H2 WILD-TYPE" "OR8H2 WILD-TYPE" "OR8H2 WILD-TYPE" "OR8H2 WILD-TYPE" 
     TCGA-50-5946      TCGA-50-6590      TCGA-50-6591      TCGA-50-6592 
"OR8H2 WILD-TYPE" "OR8H2 WILD-TYPE" "OR8H2 WILD-TYPE" "OR8H2 WILD-TYPE" 
     TCGA-50-6593      TCGA-50-6594      TCGA-50-6595      TCGA-50-6597 
"OR8H2 WILD-TYPE" "OR8H2 WILD-TYPE" "OR8H2 WILD-TYPE" "OR8H2 WILD-TYPE" 
     TCGA-55-1592      TCGA-55-1594      TCGA-55-1595      TCGA-55-1596 
"OR8H2 WILD-TYPE" "OR8H2 WILD-TYPE" "OR8H2 WILD-TYPE" "OR8H2 WILD-TYPE" 
     TCGA-55-5899      TCGA-55-6543      TCGA-55-6642      TCGA-55-6712 
"OR8H2 WILD-TYPE" "OR8H2 WILD-TYPE" "OR8H2 WILD-TYPE" "OR8H2 WILD-TYPE" 
     TCGA-64-1676      TCGA-64-1677      TCGA-64-1678      TCGA-64-1680 
"OR8H2 WILD-TYPE" "OR8H2 WILD-TYPE" "OR8H2 WILD-TYPE" "OR8H2 WILD-TYPE" 
     TCGA-64-5774      TCGA-64-5775      TCGA-64-5778      TCGA-64-5779 
"OR8H2 WILD-TYPE" "OR8H2 WILD-TYPE"   "OR8H2 MUTATED" "OR8H2 WILD-TYPE" 
     TCGA-64-5781      TCGA-64-5815      TCGA-67-3770      TCGA-67-3771 
  "OR8H2 MUTATED" "OR8H2 WILD-TYPE" "OR8H2 WILD-TYPE" "OR8H2 WILD-TYPE" 
     TCGA-67-3772      TCGA-67-3773      TCGA-67-3774      TCGA-67-6215 
"OR8H2 WILD-TYPE" "OR8H2 WILD-TYPE" "OR8H2 WILD-TYPE" "OR8H2 WILD-TYPE" 
     TCGA-67-6216      TCGA-67-6217      TCGA-71-6725      TCGA-73-4658 
"OR8H2 WILD-TYPE" "OR8H2 WILD-TYPE" "OR8H2 WILD-TYPE" "OR8H2 WILD-TYPE" 
     TCGA-73-4659      TCGA-73-4662      TCGA-73-4666      TCGA-73-4668 
"OR8H2 WILD-TYPE" "OR8H2 WILD-TYPE" "OR8H2 WILD-TYPE" "OR8H2 WILD-TYPE" 
     TCGA-73-4670      TCGA-73-4675      TCGA-73-4676      TCGA-73-4677 
"OR8H2 WILD-TYPE" "OR8H2 WILD-TYPE" "OR8H2 WILD-TYPE" "OR8H2 WILD-TYPE" 
     TCGA-91-6828      TCGA-91-6829      TCGA-91-6831      TCGA-91-6835 
"OR8H2 WILD-TYPE" "OR8H2 WILD-TYPE" "OR8H2 WILD-TYPE" "OR8H2 WILD-TYPE" 
     TCGA-91-6836 
"OR8H2 WILD-TYPE" 
[1] "hr=" "1.3"
D34V2, continuous
D34V3, binary
[1] "tbl2"
                 cls
clus              [,1] [,2]
  OR8H2 MUTATED      4    7
  OR8H2 WILD-TYPE   89   72
        clus
vv       OR8H2 MUTATED OR8H2 WILD-TYPE
  FEMALE             4              89
  MALE               7              72
D34V4, continuous
[1] "Remove cluster labels:" "OR8H2 MUTATED"         
clus
  OR8H2 MUTATED OR8H2 WILD-TYPE 
              2              10 
     TCGA-35-4123      TCGA-35-5375      TCGA-64-1677      TCGA-71-6725 
"OR8H2 WILD-TYPE" "OR8H2 WILD-TYPE" "OR8H2 WILD-TYPE" "OR8H2 WILD-TYPE" 
     TCGA-73-4659      TCGA-73-4662      TCGA-73-4666      TCGA-73-4668 
"OR8H2 WILD-TYPE" "OR8H2 WILD-TYPE" "OR8H2 WILD-TYPE" "OR8H2 WILD-TYPE" 
     TCGA-73-4676      TCGA-75-5122 
"OR8H2 WILD-TYPE" "OR8H2 WILD-TYPE" 
D34V5, multiclass
D34V6, multiclass
    clus
vv   OR8H2 MUTATED OR8H2 WILD-TYPE
  T1             3              38
  T2             5             103
  T3             2              12
  T4             1               7
D34V7, multiclass
       clus
vv      OR8H2 MUTATED OR8H2 WILD-TYPE
  N0                6              89
  N1                4              33
  N2+N3             1              34
D34V8, multiclass
    clus
vv   OR8H2 MUTATED OR8H2 WILD-TYPE
  M0            11             126
  M1             0               9
  MX             0              22
D34V9, multiclass
     clus
vv    OR8H2 MUTATED OR8H2 WILD-TYPE
  I               5              83
  II              3              30
  III             3              36
  IV              0               9
D34V10, binary
[1] "tbl2"
                 cls
clus              [,1] [,2]
  OR8H2 MUTATED      2    9
  OR8H2 WILD-TYPE   14  147
     clus
vv    OR8H2 MUTATED OR8H2 WILD-TYPE
  NO              2              14
  YES             9             147
D34V11, continuous
D34V12, continuous
D34V13, multiclass
                                             clus
vv                                            OR8H2 MUTATED OR8H2 WILD-TYPE
  CURRENT REFORMED SMOKER FOR < OR = 15 YEARS             8              54
  CURRENT REFORMED SMOKER FOR > 15 YEARS                  3              43
  CURRENT SMOKER                                          0              28
  LIFELONG NON-SMOKER                                     0              24
D34V14, continuous

Clustering(35) Variable = OR5D14 MUTATION ANALYSIS
D35V1, survival
                  sevent
clus2               0  1
  OR5D14 MUTATED    7  4
  OR5D14 WILD-TYPE 92 46
  OR5D14 MUTATED OR5D14 WILD-TYPE 
              11              138 
  OR5D14 MUTATED OR5D14 WILD-TYPE 
               4               46 
$`OR5D14 MUTATED`
TCGA-05-4382 TCGA-05-4420 TCGA-05-4432 TCGA-38-4627 TCGA-38-4631 TCGA-50-5045 
       19.92        29.95        25.02        37.71        11.64        71.47 
TCGA-50-5049 TCGA-50-5941 TCGA-50-6590 TCGA-64-5778 TCGA-73-4668 
       48.82         9.37        42.31        30.44        15.35 

$`OR5D14 WILD-TYPE`
TCGA-05-4249 TCGA-05-4250 TCGA-05-4384 TCGA-05-4390 TCGA-05-4396 TCGA-05-4397 
       38.07         3.98        14.01        37.02         9.96        24.03 
TCGA-05-4398 TCGA-05-4402 TCGA-05-4405 TCGA-05-4415 TCGA-05-4417 TCGA-05-4418 
       47.05         8.02        20.05         2.96        14.93         8.98 
TCGA-05-4424 TCGA-05-4426 TCGA-05-4427 TCGA-05-4430 TCGA-05-4433 TCGA-05-4434 
       30.02        26.01        26.01        25.02        24.00        15.02 
TCGA-05-5420 TCGA-05-5423 TCGA-05-5425 TCGA-05-5429 TCGA-05-5715 TCGA-35-3615 
        1.02         4.96         2.96         0.99         2.04         0.46 
TCGA-35-4122 TCGA-35-4123 TCGA-35-5375 TCGA-38-4625 TCGA-38-4626 TCGA-38-4628 
        7.36         5.95         8.68        47.61        85.32        49.02 
TCGA-38-4629 TCGA-38-4630 TCGA-38-4632 TCGA-38-6178 TCGA-44-2655 TCGA-44-2656 
       28.37        35.28        44.61         5.19        18.87        19.10 
TCGA-44-2657 TCGA-44-2659 TCGA-44-2661 TCGA-44-2662 TCGA-44-2665 TCGA-44-2666 
       13.15        17.39         3.39        15.78        13.15         3.19 
TCGA-44-2668 TCGA-44-3396 TCGA-44-3398 TCGA-44-3918 TCGA-44-3919 TCGA-44-4112 
        8.09        10.22         8.32         6.44         6.21         4.60 
TCGA-44-5643 TCGA-44-5645 TCGA-44-6144 TCGA-44-6145 TCGA-44-6146 TCGA-44-6147 
        3.48         6.84         0.30         3.35         9.93         7.76 
TCGA-44-6148 TCGA-44-6774 TCGA-44-6775 TCGA-44-6776 TCGA-44-6777 TCGA-44-6778 
        3.12         5.42         2.70        63.72        32.45        36.49 
TCGA-44-6779 TCGA-49-4486 TCGA-49-4487 TCGA-49-4488 TCGA-49-4490 TCGA-49-4494 
       16.41        76.21        28.11        28.57        12.66        35.54 
TCGA-49-4501 TCGA-49-4505 TCGA-49-4506 TCGA-49-4507 TCGA-49-4510 TCGA-49-4512 
       46.72        14.07        32.84         8.81        29.46        29.75 
TCGA-49-4514 TCGA-49-6742 TCGA-49-6743 TCGA-49-6744 TCGA-49-6745 TCGA-50-5044 
       43.20        15.02        12.13        12.99         4.93        20.48 
TCGA-50-5051 TCGA-50-5055 TCGA-50-5066 TCGA-50-5068 TCGA-50-5072 TCGA-50-5930 
       14.96        25.81         9.76        49.28         8.05         9.27 
TCGA-50-5931 TCGA-50-5932 TCGA-50-5933 TCGA-50-5935 TCGA-50-5936 TCGA-50-5939 
        8.78        35.87        77.88        21.47         8.45        15.12 
TCGA-50-5942 TCGA-50-5944 TCGA-50-5946 TCGA-50-6591 TCGA-50-6592 TCGA-50-6593 
        4.44        12.26        11.47         3.88        25.51        11.05 
TCGA-50-6594 TCGA-50-6595 TCGA-50-6597 TCGA-55-1592 TCGA-55-1594 TCGA-55-1595 
       12.16         6.21        33.37        23.05        38.73        48.62 
TCGA-55-1596 TCGA-55-5899 TCGA-55-6543 TCGA-55-6642 TCGA-55-6712 TCGA-64-1676 
       45.17         2.86         0.07        32.61         0.79        56.81 
TCGA-64-1677 TCGA-64-1678 TCGA-64-1680 TCGA-64-5774 TCGA-64-5775 TCGA-64-5779 
       20.65        39.09        37.02        83.84         0.10        16.67 
TCGA-64-5781 TCGA-64-5815 TCGA-67-3770 TCGA-67-3771 TCGA-67-3772 TCGA-67-3773 
       39.52         7.33         0.99         1.97         0.59         2.04 
TCGA-67-3774 TCGA-67-6215 TCGA-67-6216 TCGA-67-6217 TCGA-71-6725 TCGA-73-4658 
        0.59         0.89         0.69        13.87         2.01        52.57 
TCGA-73-4659 TCGA-73-4662 TCGA-73-4666 TCGA-73-4670 TCGA-73-4675 TCGA-73-4676 
       23.38        29.95        20.28         0.46         1.32         4.01 
TCGA-73-4677 TCGA-91-6828 TCGA-91-6829 TCGA-91-6831 TCGA-91-6835 TCGA-91-6836 
        1.25         1.22        41.33         1.28         1.15         0.36 

  OR5D14 MUTATED OR5D14 WILD-TYPE 
            9.37             0.07 
  OR5D14 MUTATED OR5D14 WILD-TYPE 
           71.47            85.32 
  OR5D14 MUTATED OR5D14 WILD-TYPE 
          29.950           12.825 
[1] "9.4 - 71.5 (29.9)" "0.1 - 85.3 (12.8)"
      TCGA-05-4249       TCGA-05-4250       TCGA-05-4382       TCGA-05-4384 
"OR5D14 WILD-TYPE" "OR5D14 WILD-TYPE"   "OR5D14 MUTATED" "OR5D14 WILD-TYPE" 
      TCGA-05-4390       TCGA-05-4396       TCGA-05-4397       TCGA-05-4398 
"OR5D14 WILD-TYPE" "OR5D14 WILD-TYPE" "OR5D14 WILD-TYPE" "OR5D14 WILD-TYPE" 
      TCGA-05-4402       TCGA-05-4405       TCGA-05-4415       TCGA-05-4417 
"OR5D14 WILD-TYPE" "OR5D14 WILD-TYPE" "OR5D14 WILD-TYPE" "OR5D14 WILD-TYPE" 
      TCGA-05-4418       TCGA-05-4420       TCGA-05-4424       TCGA-05-4426 
"OR5D14 WILD-TYPE"   "OR5D14 MUTATED" "OR5D14 WILD-TYPE" "OR5D14 WILD-TYPE" 
      TCGA-05-4427       TCGA-05-4430       TCGA-05-4432       TCGA-05-4433 
"OR5D14 WILD-TYPE" "OR5D14 WILD-TYPE"   "OR5D14 MUTATED" "OR5D14 WILD-TYPE" 
      TCGA-05-4434       TCGA-05-5420       TCGA-05-5423       TCGA-05-5425 
"OR5D14 WILD-TYPE" "OR5D14 WILD-TYPE" "OR5D14 WILD-TYPE" "OR5D14 WILD-TYPE" 
      TCGA-05-5429       TCGA-05-5715       TCGA-35-3615       TCGA-35-4122 
"OR5D14 WILD-TYPE" "OR5D14 WILD-TYPE" "OR5D14 WILD-TYPE" "OR5D14 WILD-TYPE" 
      TCGA-35-4123       TCGA-35-5375       TCGA-38-4625       TCGA-38-4626 
"OR5D14 WILD-TYPE" "OR5D14 WILD-TYPE" "OR5D14 WILD-TYPE" "OR5D14 WILD-TYPE" 
      TCGA-38-4627       TCGA-38-4628       TCGA-38-4629       TCGA-38-4630 
  "OR5D14 MUTATED" "OR5D14 WILD-TYPE" "OR5D14 WILD-TYPE" "OR5D14 WILD-TYPE" 
      TCGA-38-4631       TCGA-38-4632       TCGA-38-6178       TCGA-44-2655 
  "OR5D14 MUTATED" "OR5D14 WILD-TYPE" "OR5D14 WILD-TYPE" "OR5D14 WILD-TYPE" 
      TCGA-44-2656       TCGA-44-2657       TCGA-44-2659       TCGA-44-2661 
"OR5D14 WILD-TYPE" "OR5D14 WILD-TYPE" "OR5D14 WILD-TYPE" "OR5D14 WILD-TYPE" 
      TCGA-44-2662       TCGA-44-2665       TCGA-44-2666       TCGA-44-2668 
"OR5D14 WILD-TYPE" "OR5D14 WILD-TYPE" "OR5D14 WILD-TYPE" "OR5D14 WILD-TYPE" 
      TCGA-44-3396       TCGA-44-3398       TCGA-44-3918       TCGA-44-3919 
"OR5D14 WILD-TYPE" "OR5D14 WILD-TYPE" "OR5D14 WILD-TYPE" "OR5D14 WILD-TYPE" 
      TCGA-44-4112       TCGA-44-5643       TCGA-44-5645       TCGA-44-6144 
"OR5D14 WILD-TYPE" "OR5D14 WILD-TYPE" "OR5D14 WILD-TYPE" "OR5D14 WILD-TYPE" 
      TCGA-44-6145       TCGA-44-6146       TCGA-44-6147       TCGA-44-6148 
"OR5D14 WILD-TYPE" "OR5D14 WILD-TYPE" "OR5D14 WILD-TYPE" "OR5D14 WILD-TYPE" 
      TCGA-44-6774       TCGA-44-6775       TCGA-44-6776       TCGA-44-6777 
"OR5D14 WILD-TYPE" "OR5D14 WILD-TYPE" "OR5D14 WILD-TYPE" "OR5D14 WILD-TYPE" 
      TCGA-44-6778       TCGA-44-6779       TCGA-49-4486       TCGA-49-4487 
"OR5D14 WILD-TYPE" "OR5D14 WILD-TYPE" "OR5D14 WILD-TYPE" "OR5D14 WILD-TYPE" 
      TCGA-49-4488       TCGA-49-4490       TCGA-49-4494       TCGA-49-4501 
"OR5D14 WILD-TYPE" "OR5D14 WILD-TYPE" "OR5D14 WILD-TYPE" "OR5D14 WILD-TYPE" 
      TCGA-49-4505       TCGA-49-4506       TCGA-49-4507       TCGA-49-4510 
"OR5D14 WILD-TYPE" "OR5D14 WILD-TYPE" "OR5D14 WILD-TYPE" "OR5D14 WILD-TYPE" 
      TCGA-49-4512       TCGA-49-4514       TCGA-49-6742       TCGA-49-6743 
"OR5D14 WILD-TYPE" "OR5D14 WILD-TYPE" "OR5D14 WILD-TYPE" "OR5D14 WILD-TYPE" 
      TCGA-49-6744       TCGA-49-6745       TCGA-50-5044       TCGA-50-5045 
"OR5D14 WILD-TYPE" "OR5D14 WILD-TYPE" "OR5D14 WILD-TYPE"   "OR5D14 MUTATED" 
      TCGA-50-5049       TCGA-50-5051       TCGA-50-5055       TCGA-50-5066 
  "OR5D14 MUTATED" "OR5D14 WILD-TYPE" "OR5D14 WILD-TYPE" "OR5D14 WILD-TYPE" 
      TCGA-50-5068       TCGA-50-5072       TCGA-50-5930       TCGA-50-5931 
"OR5D14 WILD-TYPE" "OR5D14 WILD-TYPE" "OR5D14 WILD-TYPE" "OR5D14 WILD-TYPE" 
      TCGA-50-5932       TCGA-50-5933       TCGA-50-5935       TCGA-50-5936 
"OR5D14 WILD-TYPE" "OR5D14 WILD-TYPE" "OR5D14 WILD-TYPE" "OR5D14 WILD-TYPE" 
      TCGA-50-5939       TCGA-50-5941       TCGA-50-5942       TCGA-50-5944 
"OR5D14 WILD-TYPE"   "OR5D14 MUTATED" "OR5D14 WILD-TYPE" "OR5D14 WILD-TYPE" 
      TCGA-50-5946       TCGA-50-6590       TCGA-50-6591       TCGA-50-6592 
"OR5D14 WILD-TYPE"   "OR5D14 MUTATED" "OR5D14 WILD-TYPE" "OR5D14 WILD-TYPE" 
      TCGA-50-6593       TCGA-50-6594       TCGA-50-6595       TCGA-50-6597 
"OR5D14 WILD-TYPE" "OR5D14 WILD-TYPE" "OR5D14 WILD-TYPE" "OR5D14 WILD-TYPE" 
      TCGA-55-1592       TCGA-55-1594       TCGA-55-1595       TCGA-55-1596 
"OR5D14 WILD-TYPE" "OR5D14 WILD-TYPE" "OR5D14 WILD-TYPE" "OR5D14 WILD-TYPE" 
      TCGA-55-5899       TCGA-55-6543       TCGA-55-6642       TCGA-55-6712 
"OR5D14 WILD-TYPE" "OR5D14 WILD-TYPE" "OR5D14 WILD-TYPE" "OR5D14 WILD-TYPE" 
      TCGA-64-1676       TCGA-64-1677       TCGA-64-1678       TCGA-64-1680 
"OR5D14 WILD-TYPE" "OR5D14 WILD-TYPE" "OR5D14 WILD-TYPE" "OR5D14 WILD-TYPE" 
      TCGA-64-5774       TCGA-64-5775       TCGA-64-5778       TCGA-64-5779 
"OR5D14 WILD-TYPE" "OR5D14 WILD-TYPE"   "OR5D14 MUTATED" "OR5D14 WILD-TYPE" 
      TCGA-64-5781       TCGA-64-5815       TCGA-67-3770       TCGA-67-3771 
"OR5D14 WILD-TYPE" "OR5D14 WILD-TYPE" "OR5D14 WILD-TYPE" "OR5D14 WILD-TYPE" 
      TCGA-67-3772       TCGA-67-3773       TCGA-67-3774       TCGA-67-6215 
"OR5D14 WILD-TYPE" "OR5D14 WILD-TYPE" "OR5D14 WILD-TYPE" "OR5D14 WILD-TYPE" 
      TCGA-67-6216       TCGA-67-6217       TCGA-71-6725       TCGA-73-4658 
"OR5D14 WILD-TYPE" "OR5D14 WILD-TYPE" "OR5D14 WILD-TYPE" "OR5D14 WILD-TYPE" 
      TCGA-73-4659       TCGA-73-4662       TCGA-73-4666       TCGA-73-4668 
"OR5D14 WILD-TYPE" "OR5D14 WILD-TYPE" "OR5D14 WILD-TYPE"   "OR5D14 MUTATED" 
      TCGA-73-4670       TCGA-73-4675       TCGA-73-4676       TCGA-73-4677 
"OR5D14 WILD-TYPE" "OR5D14 WILD-TYPE" "OR5D14 WILD-TYPE" "OR5D14 WILD-TYPE" 
      TCGA-91-6828       TCGA-91-6829       TCGA-91-6831       TCGA-91-6835 
"OR5D14 WILD-TYPE" "OR5D14 WILD-TYPE" "OR5D14 WILD-TYPE" "OR5D14 WILD-TYPE" 
      TCGA-91-6836 
"OR5D14 WILD-TYPE" 
      TCGA-05-4249       TCGA-05-4250       TCGA-05-4382       TCGA-05-4384 
"OR5D14 WILD-TYPE" "OR5D14 WILD-TYPE"   "OR5D14 MUTATED" "OR5D14 WILD-TYPE" 
      TCGA-05-4390       TCGA-05-4396       TCGA-05-4397       TCGA-05-4398 
"OR5D14 WILD-TYPE" "OR5D14 WILD-TYPE" "OR5D14 WILD-TYPE" "OR5D14 WILD-TYPE" 
      TCGA-05-4402       TCGA-05-4405       TCGA-05-4415       TCGA-05-4417 
"OR5D14 WILD-TYPE" "OR5D14 WILD-TYPE" "OR5D14 WILD-TYPE" "OR5D14 WILD-TYPE" 
      TCGA-05-4418       TCGA-05-4420       TCGA-05-4424       TCGA-05-4426 
"OR5D14 WILD-TYPE"   "OR5D14 MUTATED" "OR5D14 WILD-TYPE" "OR5D14 WILD-TYPE" 
      TCGA-05-4427       TCGA-05-4430       TCGA-05-4432       TCGA-05-4433 
"OR5D14 WILD-TYPE" "OR5D14 WILD-TYPE"   "OR5D14 MUTATED" "OR5D14 WILD-TYPE" 
      TCGA-05-4434       TCGA-05-5420       TCGA-05-5423       TCGA-05-5425 
"OR5D14 WILD-TYPE" "OR5D14 WILD-TYPE" "OR5D14 WILD-TYPE" "OR5D14 WILD-TYPE" 
      TCGA-05-5429       TCGA-05-5715       TCGA-35-3615       TCGA-35-4122 
"OR5D14 WILD-TYPE" "OR5D14 WILD-TYPE" "OR5D14 WILD-TYPE" "OR5D14 WILD-TYPE" 
      TCGA-35-4123       TCGA-35-5375       TCGA-38-4625       TCGA-38-4626 
"OR5D14 WILD-TYPE" "OR5D14 WILD-TYPE" "OR5D14 WILD-TYPE" "OR5D14 WILD-TYPE" 
      TCGA-38-4627       TCGA-38-4628       TCGA-38-4629       TCGA-38-4630 
  "OR5D14 MUTATED" "OR5D14 WILD-TYPE" "OR5D14 WILD-TYPE" "OR5D14 WILD-TYPE" 
      TCGA-38-4631       TCGA-38-4632       TCGA-38-6178       TCGA-44-2655 
  "OR5D14 MUTATED" "OR5D14 WILD-TYPE" "OR5D14 WILD-TYPE" "OR5D14 WILD-TYPE" 
      TCGA-44-2656       TCGA-44-2657       TCGA-44-2659       TCGA-44-2661 
"OR5D14 WILD-TYPE" "OR5D14 WILD-TYPE" "OR5D14 WILD-TYPE" "OR5D14 WILD-TYPE" 
      TCGA-44-2662       TCGA-44-2665       TCGA-44-2666       TCGA-44-2668 
"OR5D14 WILD-TYPE" "OR5D14 WILD-TYPE" "OR5D14 WILD-TYPE" "OR5D14 WILD-TYPE" 
      TCGA-44-3396       TCGA-44-3398       TCGA-44-3918       TCGA-44-3919 
"OR5D14 WILD-TYPE" "OR5D14 WILD-TYPE" "OR5D14 WILD-TYPE" "OR5D14 WILD-TYPE" 
      TCGA-44-4112       TCGA-44-5643       TCGA-44-5645       TCGA-44-6144 
"OR5D14 WILD-TYPE" "OR5D14 WILD-TYPE" "OR5D14 WILD-TYPE" "OR5D14 WILD-TYPE" 
      TCGA-44-6145       TCGA-44-6146       TCGA-44-6147       TCGA-44-6148 
"OR5D14 WILD-TYPE" "OR5D14 WILD-TYPE" "OR5D14 WILD-TYPE" "OR5D14 WILD-TYPE" 
      TCGA-44-6774       TCGA-44-6775       TCGA-44-6776       TCGA-44-6777 
"OR5D14 WILD-TYPE" "OR5D14 WILD-TYPE" "OR5D14 WILD-TYPE" "OR5D14 WILD-TYPE" 
      TCGA-44-6778       TCGA-44-6779       TCGA-49-4486       TCGA-49-4487 
"OR5D14 WILD-TYPE" "OR5D14 WILD-TYPE" "OR5D14 WILD-TYPE" "OR5D14 WILD-TYPE" 
      TCGA-49-4488       TCGA-49-4490       TCGA-49-4494       TCGA-49-4501 
"OR5D14 WILD-TYPE" "OR5D14 WILD-TYPE" "OR5D14 WILD-TYPE" "OR5D14 WILD-TYPE" 
      TCGA-49-4505       TCGA-49-4506       TCGA-49-4507       TCGA-49-4510 
"OR5D14 WILD-TYPE" "OR5D14 WILD-TYPE" "OR5D14 WILD-TYPE" "OR5D14 WILD-TYPE" 
      TCGA-49-4512       TCGA-49-4514       TCGA-49-6742       TCGA-49-6743 
"OR5D14 WILD-TYPE" "OR5D14 WILD-TYPE" "OR5D14 WILD-TYPE" "OR5D14 WILD-TYPE" 
      TCGA-49-6744       TCGA-49-6745       TCGA-50-5044       TCGA-50-5045 
"OR5D14 WILD-TYPE" "OR5D14 WILD-TYPE" "OR5D14 WILD-TYPE"   "OR5D14 MUTATED" 
      TCGA-50-5049       TCGA-50-5051       TCGA-50-5055       TCGA-50-5066 
  "OR5D14 MUTATED" "OR5D14 WILD-TYPE" "OR5D14 WILD-TYPE" "OR5D14 WILD-TYPE" 
      TCGA-50-5068       TCGA-50-5072       TCGA-50-5930       TCGA-50-5931 
"OR5D14 WILD-TYPE" "OR5D14 WILD-TYPE" "OR5D14 WILD-TYPE" "OR5D14 WILD-TYPE" 
      TCGA-50-5932       TCGA-50-5933       TCGA-50-5935       TCGA-50-5936 
"OR5D14 WILD-TYPE" "OR5D14 WILD-TYPE" "OR5D14 WILD-TYPE" "OR5D14 WILD-TYPE" 
      TCGA-50-5939       TCGA-50-5941       TCGA-50-5942       TCGA-50-5944 
"OR5D14 WILD-TYPE"   "OR5D14 MUTATED" "OR5D14 WILD-TYPE" "OR5D14 WILD-TYPE" 
      TCGA-50-5946       TCGA-50-6590       TCGA-50-6591       TCGA-50-6592 
"OR5D14 WILD-TYPE"   "OR5D14 MUTATED" "OR5D14 WILD-TYPE" "OR5D14 WILD-TYPE" 
      TCGA-50-6593       TCGA-50-6594       TCGA-50-6595       TCGA-50-6597 
"OR5D14 WILD-TYPE" "OR5D14 WILD-TYPE" "OR5D14 WILD-TYPE" "OR5D14 WILD-TYPE" 
      TCGA-55-1592       TCGA-55-1594       TCGA-55-1595       TCGA-55-1596 
"OR5D14 WILD-TYPE" "OR5D14 WILD-TYPE" "OR5D14 WILD-TYPE" "OR5D14 WILD-TYPE" 
      TCGA-55-5899       TCGA-55-6543       TCGA-55-6642       TCGA-55-6712 
"OR5D14 WILD-TYPE" "OR5D14 WILD-TYPE" "OR5D14 WILD-TYPE" "OR5D14 WILD-TYPE" 
      TCGA-64-1676       TCGA-64-1677       TCGA-64-1678       TCGA-64-1680 
"OR5D14 WILD-TYPE" "OR5D14 WILD-TYPE" "OR5D14 WILD-TYPE" "OR5D14 WILD-TYPE" 
      TCGA-64-5774       TCGA-64-5775       TCGA-64-5778       TCGA-64-5779 
"OR5D14 WILD-TYPE" "OR5D14 WILD-TYPE"   "OR5D14 MUTATED" "OR5D14 WILD-TYPE" 
      TCGA-64-5781       TCGA-64-5815       TCGA-67-3770       TCGA-67-3771 
"OR5D14 WILD-TYPE" "OR5D14 WILD-TYPE" "OR5D14 WILD-TYPE" "OR5D14 WILD-TYPE" 
      TCGA-67-3772       TCGA-67-3773       TCGA-67-3774       TCGA-67-6215 
"OR5D14 WILD-TYPE" "OR5D14 WILD-TYPE" "OR5D14 WILD-TYPE" "OR5D14 WILD-TYPE" 
      TCGA-67-6216       TCGA-67-6217       TCGA-71-6725       TCGA-73-4658 
"OR5D14 WILD-TYPE" "OR5D14 WILD-TYPE" "OR5D14 WILD-TYPE" "OR5D14 WILD-TYPE" 
      TCGA-73-4659       TCGA-73-4662       TCGA-73-4666       TCGA-73-4668 
"OR5D14 WILD-TYPE" "OR5D14 WILD-TYPE" "OR5D14 WILD-TYPE"   "OR5D14 MUTATED" 
      TCGA-73-4670       TCGA-73-4675       TCGA-73-4676       TCGA-73-4677 
"OR5D14 WILD-TYPE" "OR5D14 WILD-TYPE" "OR5D14 WILD-TYPE" "OR5D14 WILD-TYPE" 
      TCGA-91-6828       TCGA-91-6829       TCGA-91-6831       TCGA-91-6835 
"OR5D14 WILD-TYPE" "OR5D14 WILD-TYPE" "OR5D14 WILD-TYPE" "OR5D14 WILD-TYPE" 
      TCGA-91-6836 
"OR5D14 WILD-TYPE" 
      TCGA-05-4249       TCGA-05-4250       TCGA-05-4382       TCGA-05-4384 
"OR5D14 WILD-TYPE" "OR5D14 WILD-TYPE"   "OR5D14 MUTATED" "OR5D14 WILD-TYPE" 
      TCGA-05-4390       TCGA-05-4396       TCGA-05-4397       TCGA-05-4398 
"OR5D14 WILD-TYPE" "OR5D14 WILD-TYPE" "OR5D14 WILD-TYPE" "OR5D14 WILD-TYPE" 
      TCGA-05-4402       TCGA-05-4405       TCGA-05-4415       TCGA-05-4417 
"OR5D14 WILD-TYPE" "OR5D14 WILD-TYPE" "OR5D14 WILD-TYPE" "OR5D14 WILD-TYPE" 
      TCGA-05-4418       TCGA-05-4420       TCGA-05-4424       TCGA-05-4426 
"OR5D14 WILD-TYPE"   "OR5D14 MUTATED" "OR5D14 WILD-TYPE" "OR5D14 WILD-TYPE" 
      TCGA-05-4427       TCGA-05-4430       TCGA-05-4432       TCGA-05-4433 
"OR5D14 WILD-TYPE" "OR5D14 WILD-TYPE"   "OR5D14 MUTATED" "OR5D14 WILD-TYPE" 
      TCGA-05-4434       TCGA-05-5420       TCGA-05-5423       TCGA-05-5425 
"OR5D14 WILD-TYPE" "OR5D14 WILD-TYPE" "OR5D14 WILD-TYPE" "OR5D14 WILD-TYPE" 
      TCGA-05-5429       TCGA-05-5715       TCGA-35-3615       TCGA-35-4122 
"OR5D14 WILD-TYPE" "OR5D14 WILD-TYPE" "OR5D14 WILD-TYPE" "OR5D14 WILD-TYPE" 
      TCGA-35-4123       TCGA-35-5375       TCGA-38-4625       TCGA-38-4626 
"OR5D14 WILD-TYPE" "OR5D14 WILD-TYPE" "OR5D14 WILD-TYPE" "OR5D14 WILD-TYPE" 
      TCGA-38-4627       TCGA-38-4628       TCGA-38-4629       TCGA-38-4630 
  "OR5D14 MUTATED" "OR5D14 WILD-TYPE" "OR5D14 WILD-TYPE" "OR5D14 WILD-TYPE" 
      TCGA-38-4631       TCGA-38-4632       TCGA-38-6178       TCGA-44-2655 
  "OR5D14 MUTATED" "OR5D14 WILD-TYPE" "OR5D14 WILD-TYPE" "OR5D14 WILD-TYPE" 
      TCGA-44-2656       TCGA-44-2657       TCGA-44-2659       TCGA-44-2661 
"OR5D14 WILD-TYPE" "OR5D14 WILD-TYPE" "OR5D14 WILD-TYPE" "OR5D14 WILD-TYPE" 
      TCGA-44-2662       TCGA-44-2665       TCGA-44-2666       TCGA-44-2668 
"OR5D14 WILD-TYPE" "OR5D14 WILD-TYPE" "OR5D14 WILD-TYPE" "OR5D14 WILD-TYPE" 
      TCGA-44-3396       TCGA-44-3398       TCGA-44-3918       TCGA-44-3919 
"OR5D14 WILD-TYPE" "OR5D14 WILD-TYPE" "OR5D14 WILD-TYPE" "OR5D14 WILD-TYPE" 
      TCGA-44-4112       TCGA-44-5643       TCGA-44-5645       TCGA-44-6144 
"OR5D14 WILD-TYPE" "OR5D14 WILD-TYPE" "OR5D14 WILD-TYPE" "OR5D14 WILD-TYPE" 
      TCGA-44-6145       TCGA-44-6146       TCGA-44-6147       TCGA-44-6148 
"OR5D14 WILD-TYPE" "OR5D14 WILD-TYPE" "OR5D14 WILD-TYPE" "OR5D14 WILD-TYPE" 
      TCGA-44-6774       TCGA-44-6775       TCGA-44-6776       TCGA-44-6777 
"OR5D14 WILD-TYPE" "OR5D14 WILD-TYPE" "OR5D14 WILD-TYPE" "OR5D14 WILD-TYPE" 
      TCGA-44-6778       TCGA-44-6779       TCGA-49-4486       TCGA-49-4487 
"OR5D14 WILD-TYPE" "OR5D14 WILD-TYPE" "OR5D14 WILD-TYPE" "OR5D14 WILD-TYPE" 
      TCGA-49-4488       TCGA-49-4490       TCGA-49-4494       TCGA-49-4501 
"OR5D14 WILD-TYPE" "OR5D14 WILD-TYPE" "OR5D14 WILD-TYPE" "OR5D14 WILD-TYPE" 
      TCGA-49-4505       TCGA-49-4506       TCGA-49-4507       TCGA-49-4510 
"OR5D14 WILD-TYPE" "OR5D14 WILD-TYPE" "OR5D14 WILD-TYPE" "OR5D14 WILD-TYPE" 
      TCGA-49-4512       TCGA-49-4514       TCGA-49-6742       TCGA-49-6743 
"OR5D14 WILD-TYPE" "OR5D14 WILD-TYPE" "OR5D14 WILD-TYPE" "OR5D14 WILD-TYPE" 
      TCGA-49-6744       TCGA-49-6745       TCGA-50-5044       TCGA-50-5045 
"OR5D14 WILD-TYPE" "OR5D14 WILD-TYPE" "OR5D14 WILD-TYPE"   "OR5D14 MUTATED" 
      TCGA-50-5049       TCGA-50-5051       TCGA-50-5055       TCGA-50-5066 
  "OR5D14 MUTATED" "OR5D14 WILD-TYPE" "OR5D14 WILD-TYPE" "OR5D14 WILD-TYPE" 
      TCGA-50-5068       TCGA-50-5072       TCGA-50-5930       TCGA-50-5931 
"OR5D14 WILD-TYPE" "OR5D14 WILD-TYPE" "OR5D14 WILD-TYPE" "OR5D14 WILD-TYPE" 
      TCGA-50-5932       TCGA-50-5933       TCGA-50-5935       TCGA-50-5936 
"OR5D14 WILD-TYPE" "OR5D14 WILD-TYPE" "OR5D14 WILD-TYPE" "OR5D14 WILD-TYPE" 
      TCGA-50-5939       TCGA-50-5941       TCGA-50-5942       TCGA-50-5944 
"OR5D14 WILD-TYPE"   "OR5D14 MUTATED" "OR5D14 WILD-TYPE" "OR5D14 WILD-TYPE" 
      TCGA-50-5946       TCGA-50-6590       TCGA-50-6591       TCGA-50-6592 
"OR5D14 WILD-TYPE"   "OR5D14 MUTATED" "OR5D14 WILD-TYPE" "OR5D14 WILD-TYPE" 
      TCGA-50-6593       TCGA-50-6594       TCGA-50-6595       TCGA-50-6597 
"OR5D14 WILD-TYPE" "OR5D14 WILD-TYPE" "OR5D14 WILD-TYPE" "OR5D14 WILD-TYPE" 
      TCGA-55-1592       TCGA-55-1594       TCGA-55-1595       TCGA-55-1596 
"OR5D14 WILD-TYPE" "OR5D14 WILD-TYPE" "OR5D14 WILD-TYPE" "OR5D14 WILD-TYPE" 
      TCGA-55-5899       TCGA-55-6543       TCGA-55-6642       TCGA-55-6712 
"OR5D14 WILD-TYPE" "OR5D14 WILD-TYPE" "OR5D14 WILD-TYPE" "OR5D14 WILD-TYPE" 
      TCGA-64-1676       TCGA-64-1677       TCGA-64-1678       TCGA-64-1680 
"OR5D14 WILD-TYPE" "OR5D14 WILD-TYPE" "OR5D14 WILD-TYPE" "OR5D14 WILD-TYPE" 
      TCGA-64-5774       TCGA-64-5775       TCGA-64-5778       TCGA-64-5779 
"OR5D14 WILD-TYPE" "OR5D14 WILD-TYPE"   "OR5D14 MUTATED" "OR5D14 WILD-TYPE" 
      TCGA-64-5781       TCGA-64-5815       TCGA-67-3770       TCGA-67-3771 
"OR5D14 WILD-TYPE" "OR5D14 WILD-TYPE" "OR5D14 WILD-TYPE" "OR5D14 WILD-TYPE" 
      TCGA-67-3772       TCGA-67-3773       TCGA-67-3774       TCGA-67-6215 
"OR5D14 WILD-TYPE" "OR5D14 WILD-TYPE" "OR5D14 WILD-TYPE" "OR5D14 WILD-TYPE" 
      TCGA-67-6216       TCGA-67-6217       TCGA-71-6725       TCGA-73-4658 
"OR5D14 WILD-TYPE" "OR5D14 WILD-TYPE" "OR5D14 WILD-TYPE" "OR5D14 WILD-TYPE" 
      TCGA-73-4659       TCGA-73-4662       TCGA-73-4666       TCGA-73-4668 
"OR5D14 WILD-TYPE" "OR5D14 WILD-TYPE" "OR5D14 WILD-TYPE"   "OR5D14 MUTATED" 
      TCGA-73-4670       TCGA-73-4675       TCGA-73-4676       TCGA-73-4677 
"OR5D14 WILD-TYPE" "OR5D14 WILD-TYPE" "OR5D14 WILD-TYPE" "OR5D14 WILD-TYPE" 
      TCGA-91-6828       TCGA-91-6829       TCGA-91-6831       TCGA-91-6835 
"OR5D14 WILD-TYPE" "OR5D14 WILD-TYPE" "OR5D14 WILD-TYPE" "OR5D14 WILD-TYPE" 
      TCGA-91-6836 
"OR5D14 WILD-TYPE" 
[1] "hr=" "1.5"
D35V2, continuous
D35V3, binary
[1] "tbl2"
                  cls
clus               [,1] [,2]
  OR5D14 MUTATED      7    6
  OR5D14 WILD-TYPE   86   73
        clus
vv       OR5D14 MUTATED OR5D14 WILD-TYPE
  FEMALE              7               86
  MALE                6               73
D35V4, continuous
[1] "Remove cluster labels:" "OR5D14 MUTATED"        
clus
  OR5D14 MUTATED OR5D14 WILD-TYPE 
               2               10 
      TCGA-35-4122       TCGA-35-4123       TCGA-35-5375       TCGA-64-1677 
"OR5D14 WILD-TYPE" "OR5D14 WILD-TYPE" "OR5D14 WILD-TYPE" "OR5D14 WILD-TYPE" 
      TCGA-71-6725       TCGA-73-4659       TCGA-73-4662       TCGA-73-4666 
"OR5D14 WILD-TYPE" "OR5D14 WILD-TYPE" "OR5D14 WILD-TYPE" "OR5D14 WILD-TYPE" 
      TCGA-73-4676       TCGA-75-5122 
"OR5D14 WILD-TYPE" "OR5D14 WILD-TYPE" 
D35V5, multiclass
D35V6, multiclass
    clus
vv   OR5D14 MUTATED OR5D14 WILD-TYPE
  T1              1               40
  T2             11               97
  T3              1               13
  T4              0                8
D35V7, multiclass
       clus
vv      OR5D14 MUTATED OR5D14 WILD-TYPE
  N0                 7               88
  N1                 4               33
  N2+N3              2               33
D35V8, multiclass
    clus
vv   OR5D14 MUTATED OR5D14 WILD-TYPE
  M0             13              124
  M1              0                9
  MX              0               22
D35V9, multiclass
     clus
vv    OR5D14 MUTATED OR5D14 WILD-TYPE
  I                8               80
  II               3               30
  III              2               37
  IV               0                9
D35V10, binary
[1] "tbl2"
                  cls
clus               [,1] [,2]
  OR5D14 MUTATED      2   11
  OR5D14 WILD-TYPE   14  145
     clus
vv    OR5D14 MUTATED OR5D14 WILD-TYPE
  NO               2               14
  YES             11              145
D35V11, continuous
D35V12, continuous
D35V13, multiclass
                                             clus
vv                                            OR5D14 MUTATED OR5D14 WILD-TYPE
  CURRENT REFORMED SMOKER FOR < OR = 15 YEARS              8               54
  CURRENT REFORMED SMOKER FOR > 15 YEARS                   0               46
  CURRENT SMOKER                                           3               25
  LIFELONG NON-SMOKER                                      0               24
D35V14, continuous
[1] "Remove cluster labels:" "OR5D14 MUTATED"        
clus
  OR5D14 MUTATED OR5D14 WILD-TYPE 
               2               66 
      TCGA-05-4384       TCGA-05-4390       TCGA-05-4396       TCGA-05-4405 
"OR5D14 WILD-TYPE" "OR5D14 WILD-TYPE" "OR5D14 WILD-TYPE" "OR5D14 WILD-TYPE" 
      TCGA-05-4410       TCGA-05-4415       TCGA-05-4417       TCGA-05-4424 
"OR5D14 WILD-TYPE" "OR5D14 WILD-TYPE" "OR5D14 WILD-TYPE" "OR5D14 WILD-TYPE" 
      TCGA-05-4427       TCGA-05-4433       TCGA-05-5420       TCGA-05-5423 
"OR5D14 WILD-TYPE" "OR5D14 WILD-TYPE" "OR5D14 WILD-TYPE" "OR5D14 WILD-TYPE" 
      TCGA-05-5425       TCGA-05-5428       TCGA-35-4122       TCGA-35-4123 
"OR5D14 WILD-TYPE" "OR5D14 WILD-TYPE" "OR5D14 WILD-TYPE" "OR5D14 WILD-TYPE" 
      TCGA-35-5375       TCGA-38-4625       TCGA-38-4626       TCGA-44-2655 
"OR5D14 WILD-TYPE" "OR5D14 WILD-TYPE" "OR5D14 WILD-TYPE" "OR5D14 WILD-TYPE" 
      TCGA-44-2656       TCGA-44-2657       TCGA-44-2659       TCGA-44-2662 
"OR5D14 WILD-TYPE" "OR5D14 WILD-TYPE" "OR5D14 WILD-TYPE" "OR5D14 WILD-TYPE" 
      TCGA-44-2666       TCGA-44-2668       TCGA-44-3396       TCGA-44-3398 
"OR5D14 WILD-TYPE" "OR5D14 WILD-TYPE" "OR5D14 WILD-TYPE" "OR5D14 WILD-TYPE" 
      TCGA-44-3918       TCGA-44-4112       TCGA-44-5645       TCGA-44-6144 
"OR5D14 WILD-TYPE" "OR5D14 WILD-TYPE" "OR5D14 WILD-TYPE" "OR5D14 WILD-TYPE" 
      TCGA-44-6145       TCGA-44-6147       TCGA-44-6148       TCGA-44-6774 
"OR5D14 WILD-TYPE" "OR5D14 WILD-TYPE" "OR5D14 WILD-TYPE" "OR5D14 WILD-TYPE" 
      TCGA-44-6775       TCGA-44-6776       TCGA-44-6777       TCGA-44-6778 
"OR5D14 WILD-TYPE" "OR5D14 WILD-TYPE" "OR5D14 WILD-TYPE" "OR5D14 WILD-TYPE" 
      TCGA-44-6779       TCGA-49-4486       TCGA-49-4494       TCGA-49-4505 
"OR5D14 WILD-TYPE" "OR5D14 WILD-TYPE" "OR5D14 WILD-TYPE" "OR5D14 WILD-TYPE" 
      TCGA-55-1592       TCGA-55-1594       TCGA-55-1595       TCGA-55-1596 
"OR5D14 WILD-TYPE" "OR5D14 WILD-TYPE" "OR5D14 WILD-TYPE" "OR5D14 WILD-TYPE" 
      TCGA-55-5899       TCGA-55-6642       TCGA-55-6712       TCGA-64-1677 
"OR5D14 WILD-TYPE" "OR5D14 WILD-TYPE" "OR5D14 WILD-TYPE" "OR5D14 WILD-TYPE" 
      TCGA-64-1678       TCGA-64-1680       TCGA-64-5774       TCGA-64-5775 
"OR5D14 WILD-TYPE" "OR5D14 WILD-TYPE" "OR5D14 WILD-TYPE" "OR5D14 WILD-TYPE" 
      TCGA-64-5779       TCGA-64-5781       TCGA-73-4659       TCGA-73-4662 
"OR5D14 WILD-TYPE" "OR5D14 WILD-TYPE" "OR5D14 WILD-TYPE" "OR5D14 WILD-TYPE" 
      TCGA-73-4666       TCGA-73-4670       TCGA-73-4675       TCGA-73-4676 
"OR5D14 WILD-TYPE" "OR5D14 WILD-TYPE" "OR5D14 WILD-TYPE" "OR5D14 WILD-TYPE" 
      TCGA-91-6829       TCGA-91-6836 
"OR5D14 WILD-TYPE" "OR5D14 WILD-TYPE" 

Clustering(36) Variable = OR5I1 MUTATION ANALYSIS
D36V1, survival
                 sevent
clus2              0  1
  OR5I1 MUTATED    5  3
  OR5I1 WILD-TYPE 94 47
  OR5I1 MUTATED OR5I1 WILD-TYPE 
              8             141 
  OR5I1 MUTATED OR5I1 WILD-TYPE 
              3              47 
$`OR5I1 MUTATED`
TCGA-05-4396 TCGA-05-4418 TCGA-05-4424 TCGA-44-6144 TCGA-49-6742 TCGA-50-5933 
        9.96         8.98        30.02         0.30        15.02        77.88 
TCGA-50-5941 TCGA-64-5781 
        9.37        39.52 

$`OR5I1 WILD-TYPE`
TCGA-05-4249 TCGA-05-4250 TCGA-05-4382 TCGA-05-4384 TCGA-05-4390 TCGA-05-4397 
       38.07         3.98        19.92        14.01        37.02        24.03 
TCGA-05-4398 TCGA-05-4402 TCGA-05-4405 TCGA-05-4415 TCGA-05-4417 TCGA-05-4420 
       47.05         8.02        20.05         2.96        14.93        29.95 
TCGA-05-4426 TCGA-05-4427 TCGA-05-4430 TCGA-05-4432 TCGA-05-4433 TCGA-05-4434 
       26.01        26.01        25.02        25.02        24.00        15.02 
TCGA-05-5420 TCGA-05-5423 TCGA-05-5425 TCGA-05-5429 TCGA-05-5715 TCGA-35-3615 
        1.02         4.96         2.96         0.99         2.04         0.46 
TCGA-35-4122 TCGA-35-4123 TCGA-35-5375 TCGA-38-4625 TCGA-38-4626 TCGA-38-4627 
        7.36         5.95         8.68        47.61        85.32        37.71 
TCGA-38-4628 TCGA-38-4629 TCGA-38-4630 TCGA-38-4631 TCGA-38-4632 TCGA-38-6178 
       49.02        28.37        35.28        11.64        44.61         5.19 
TCGA-44-2655 TCGA-44-2656 TCGA-44-2657 TCGA-44-2659 TCGA-44-2661 TCGA-44-2662 
       18.87        19.10        13.15        17.39         3.39        15.78 
TCGA-44-2665 TCGA-44-2666 TCGA-44-2668 TCGA-44-3396 TCGA-44-3398 TCGA-44-3918 
       13.15         3.19         8.09        10.22         8.32         6.44 
TCGA-44-3919 TCGA-44-4112 TCGA-44-5643 TCGA-44-5645 TCGA-44-6145 TCGA-44-6146 
        6.21         4.60         3.48         6.84         3.35         9.93 
TCGA-44-6147 TCGA-44-6148 TCGA-44-6774 TCGA-44-6775 TCGA-44-6776 TCGA-44-6777 
        7.76         3.12         5.42         2.70        63.72        32.45 
TCGA-44-6778 TCGA-44-6779 TCGA-49-4486 TCGA-49-4487 TCGA-49-4488 TCGA-49-4490 
       36.49        16.41        76.21        28.11        28.57        12.66 
TCGA-49-4494 TCGA-49-4501 TCGA-49-4505 TCGA-49-4506 TCGA-49-4507 TCGA-49-4510 
       35.54        46.72        14.07        32.84         8.81        29.46 
TCGA-49-4512 TCGA-49-4514 TCGA-49-6743 TCGA-49-6744 TCGA-49-6745 TCGA-50-5044 
       29.75        43.20        12.13        12.99         4.93        20.48 
TCGA-50-5045 TCGA-50-5049 TCGA-50-5051 TCGA-50-5055 TCGA-50-5066 TCGA-50-5068 
       71.47        48.82        14.96        25.81         9.76        49.28 
TCGA-50-5072 TCGA-50-5930 TCGA-50-5931 TCGA-50-5932 TCGA-50-5935 TCGA-50-5936 
        8.05         9.27         8.78        35.87        21.47         8.45 
TCGA-50-5939 TCGA-50-5942 TCGA-50-5944 TCGA-50-5946 TCGA-50-6590 TCGA-50-6591 
       15.12         4.44        12.26        11.47        42.31         3.88 
TCGA-50-6592 TCGA-50-6593 TCGA-50-6594 TCGA-50-6595 TCGA-50-6597 TCGA-55-1592 
       25.51        11.05        12.16         6.21        33.37        23.05 
TCGA-55-1594 TCGA-55-1595 TCGA-55-1596 TCGA-55-5899 TCGA-55-6543 TCGA-55-6642 
       38.73        48.62        45.17         2.86         0.07        32.61 
TCGA-55-6712 TCGA-64-1676 TCGA-64-1677 TCGA-64-1678 TCGA-64-1680 TCGA-64-5774 
        0.79        56.81        20.65        39.09        37.02        83.84 
TCGA-64-5775 TCGA-64-5778 TCGA-64-5779 TCGA-64-5815 TCGA-67-3770 TCGA-67-3771 
        0.10        30.44        16.67         7.33         0.99         1.97 
TCGA-67-3772 TCGA-67-3773 TCGA-67-3774 TCGA-67-6215 TCGA-67-6216 TCGA-67-6217 
        0.59         2.04         0.59         0.89         0.69        13.87 
TCGA-71-6725 TCGA-73-4658 TCGA-73-4659 TCGA-73-4662 TCGA-73-4666 TCGA-73-4668 
        2.01        52.57        23.38        29.95        20.28        15.35 
TCGA-73-4670 TCGA-73-4675 TCGA-73-4676 TCGA-73-4677 TCGA-91-6828 TCGA-91-6829 
        0.46         1.32         4.01         1.25         1.22        41.33 
TCGA-91-6831 TCGA-91-6835 TCGA-91-6836 
        1.28         1.15         0.36 

  OR5I1 MUTATED OR5I1 WILD-TYPE 
           0.30            0.07 
  OR5I1 MUTATED OR5I1 WILD-TYPE 
          77.88           85.32 
  OR5I1 MUTATED OR5I1 WILD-TYPE 
          12.49           13.87 
[1] "0.3 - 77.9 (12.5)" "0.1 - 85.3 (13.9)"
     TCGA-05-4249      TCGA-05-4250      TCGA-05-4382      TCGA-05-4384 
"OR5I1 WILD-TYPE" "OR5I1 WILD-TYPE" "OR5I1 WILD-TYPE" "OR5I1 WILD-TYPE" 
     TCGA-05-4390      TCGA-05-4396      TCGA-05-4397      TCGA-05-4398 
"OR5I1 WILD-TYPE"   "OR5I1 MUTATED" "OR5I1 WILD-TYPE" "OR5I1 WILD-TYPE" 
     TCGA-05-4402      TCGA-05-4405      TCGA-05-4415      TCGA-05-4417 
"OR5I1 WILD-TYPE" "OR5I1 WILD-TYPE" "OR5I1 WILD-TYPE" "OR5I1 WILD-TYPE" 
     TCGA-05-4418      TCGA-05-4420      TCGA-05-4424      TCGA-05-4426 
  "OR5I1 MUTATED" "OR5I1 WILD-TYPE"   "OR5I1 MUTATED" "OR5I1 WILD-TYPE" 
     TCGA-05-4427      TCGA-05-4430      TCGA-05-4432      TCGA-05-4433 
"OR5I1 WILD-TYPE" "OR5I1 WILD-TYPE" "OR5I1 WILD-TYPE" "OR5I1 WILD-TYPE" 
     TCGA-05-4434      TCGA-05-5420      TCGA-05-5423      TCGA-05-5425 
"OR5I1 WILD-TYPE" "OR5I1 WILD-TYPE" "OR5I1 WILD-TYPE" "OR5I1 WILD-TYPE" 
     TCGA-05-5429      TCGA-05-5715      TCGA-35-3615      TCGA-35-4122 
"OR5I1 WILD-TYPE" "OR5I1 WILD-TYPE" "OR5I1 WILD-TYPE" "OR5I1 WILD-TYPE" 
     TCGA-35-4123      TCGA-35-5375      TCGA-38-4625      TCGA-38-4626 
"OR5I1 WILD-TYPE" "OR5I1 WILD-TYPE" "OR5I1 WILD-TYPE" "OR5I1 WILD-TYPE" 
     TCGA-38-4627      TCGA-38-4628      TCGA-38-4629      TCGA-38-4630 
"OR5I1 WILD-TYPE" "OR5I1 WILD-TYPE" "OR5I1 WILD-TYPE" "OR5I1 WILD-TYPE" 
     TCGA-38-4631      TCGA-38-4632      TCGA-38-6178      TCGA-44-2655 
"OR5I1 WILD-TYPE" "OR5I1 WILD-TYPE" "OR5I1 WILD-TYPE" "OR5I1 WILD-TYPE" 
     TCGA-44-2656      TCGA-44-2657      TCGA-44-2659      TCGA-44-2661 
"OR5I1 WILD-TYPE" "OR5I1 WILD-TYPE" "OR5I1 WILD-TYPE" "OR5I1 WILD-TYPE" 
     TCGA-44-2662      TCGA-44-2665      TCGA-44-2666      TCGA-44-2668 
"OR5I1 WILD-TYPE" "OR5I1 WILD-TYPE" "OR5I1 WILD-TYPE" "OR5I1 WILD-TYPE" 
     TCGA-44-3396      TCGA-44-3398      TCGA-44-3918      TCGA-44-3919 
"OR5I1 WILD-TYPE" "OR5I1 WILD-TYPE" "OR5I1 WILD-TYPE" "OR5I1 WILD-TYPE" 
     TCGA-44-4112      TCGA-44-5643      TCGA-44-5645      TCGA-44-6144 
"OR5I1 WILD-TYPE" "OR5I1 WILD-TYPE" "OR5I1 WILD-TYPE"   "OR5I1 MUTATED" 
     TCGA-44-6145      TCGA-44-6146      TCGA-44-6147      TCGA-44-6148 
"OR5I1 WILD-TYPE" "OR5I1 WILD-TYPE" "OR5I1 WILD-TYPE" "OR5I1 WILD-TYPE" 
     TCGA-44-6774      TCGA-44-6775      TCGA-44-6776      TCGA-44-6777 
"OR5I1 WILD-TYPE" "OR5I1 WILD-TYPE" "OR5I1 WILD-TYPE" "OR5I1 WILD-TYPE" 
     TCGA-44-6778      TCGA-44-6779      TCGA-49-4486      TCGA-49-4487 
"OR5I1 WILD-TYPE" "OR5I1 WILD-TYPE" "OR5I1 WILD-TYPE" "OR5I1 WILD-TYPE" 
     TCGA-49-4488      TCGA-49-4490      TCGA-49-4494      TCGA-49-4501 
"OR5I1 WILD-TYPE" "OR5I1 WILD-TYPE" "OR5I1 WILD-TYPE" "OR5I1 WILD-TYPE" 
     TCGA-49-4505      TCGA-49-4506      TCGA-49-4507      TCGA-49-4510 
"OR5I1 WILD-TYPE" "OR5I1 WILD-TYPE" "OR5I1 WILD-TYPE" "OR5I1 WILD-TYPE" 
     TCGA-49-4512      TCGA-49-4514      TCGA-49-6742      TCGA-49-6743 
"OR5I1 WILD-TYPE" "OR5I1 WILD-TYPE"   "OR5I1 MUTATED" "OR5I1 WILD-TYPE" 
     TCGA-49-6744      TCGA-49-6745      TCGA-50-5044      TCGA-50-5045 
"OR5I1 WILD-TYPE" "OR5I1 WILD-TYPE" "OR5I1 WILD-TYPE" "OR5I1 WILD-TYPE" 
     TCGA-50-5049      TCGA-50-5051      TCGA-50-5055      TCGA-50-5066 
"OR5I1 WILD-TYPE" "OR5I1 WILD-TYPE" "OR5I1 WILD-TYPE" "OR5I1 WILD-TYPE" 
     TCGA-50-5068      TCGA-50-5072      TCGA-50-5930      TCGA-50-5931 
"OR5I1 WILD-TYPE" "OR5I1 WILD-TYPE" "OR5I1 WILD-TYPE" "OR5I1 WILD-TYPE" 
     TCGA-50-5932      TCGA-50-5933      TCGA-50-5935      TCGA-50-5936 
"OR5I1 WILD-TYPE"   "OR5I1 MUTATED" "OR5I1 WILD-TYPE" "OR5I1 WILD-TYPE" 
     TCGA-50-5939      TCGA-50-5941      TCGA-50-5942      TCGA-50-5944 
"OR5I1 WILD-TYPE"   "OR5I1 MUTATED" "OR5I1 WILD-TYPE" "OR5I1 WILD-TYPE" 
     TCGA-50-5946      TCGA-50-6590      TCGA-50-6591      TCGA-50-6592 
"OR5I1 WILD-TYPE" "OR5I1 WILD-TYPE" "OR5I1 WILD-TYPE" "OR5I1 WILD-TYPE" 
     TCGA-50-6593      TCGA-50-6594      TCGA-50-6595      TCGA-50-6597 
"OR5I1 WILD-TYPE" "OR5I1 WILD-TYPE" "OR5I1 WILD-TYPE" "OR5I1 WILD-TYPE" 
     TCGA-55-1592      TCGA-55-1594      TCGA-55-1595      TCGA-55-1596 
"OR5I1 WILD-TYPE" "OR5I1 WILD-TYPE" "OR5I1 WILD-TYPE" "OR5I1 WILD-TYPE" 
     TCGA-55-5899      TCGA-55-6543      TCGA-55-6642      TCGA-55-6712 
"OR5I1 WILD-TYPE" "OR5I1 WILD-TYPE" "OR5I1 WILD-TYPE" "OR5I1 WILD-TYPE" 
     TCGA-64-1676      TCGA-64-1677      TCGA-64-1678      TCGA-64-1680 
"OR5I1 WILD-TYPE" "OR5I1 WILD-TYPE" "OR5I1 WILD-TYPE" "OR5I1 WILD-TYPE" 
     TCGA-64-5774      TCGA-64-5775      TCGA-64-5778      TCGA-64-5779 
"OR5I1 WILD-TYPE" "OR5I1 WILD-TYPE" "OR5I1 WILD-TYPE" "OR5I1 WILD-TYPE" 
     TCGA-64-5781      TCGA-64-5815      TCGA-67-3770      TCGA-67-3771 
  "OR5I1 MUTATED" "OR5I1 WILD-TYPE" "OR5I1 WILD-TYPE" "OR5I1 WILD-TYPE" 
     TCGA-67-3772      TCGA-67-3773      TCGA-67-3774      TCGA-67-6215 
"OR5I1 WILD-TYPE" "OR5I1 WILD-TYPE" "OR5I1 WILD-TYPE" "OR5I1 WILD-TYPE" 
     TCGA-67-6216      TCGA-67-6217      TCGA-71-6725      TCGA-73-4658 
"OR5I1 WILD-TYPE" "OR5I1 WILD-TYPE" "OR5I1 WILD-TYPE" "OR5I1 WILD-TYPE" 
     TCGA-73-4659      TCGA-73-4662      TCGA-73-4666      TCGA-73-4668 
"OR5I1 WILD-TYPE" "OR5I1 WILD-TYPE" "OR5I1 WILD-TYPE" "OR5I1 WILD-TYPE" 
     TCGA-73-4670      TCGA-73-4675      TCGA-73-4676      TCGA-73-4677 
"OR5I1 WILD-TYPE" "OR5I1 WILD-TYPE" "OR5I1 WILD-TYPE" "OR5I1 WILD-TYPE" 
     TCGA-91-6828      TCGA-91-6829      TCGA-91-6831      TCGA-91-6835 
"OR5I1 WILD-TYPE" "OR5I1 WILD-TYPE" "OR5I1 WILD-TYPE" "OR5I1 WILD-TYPE" 
     TCGA-91-6836 
"OR5I1 WILD-TYPE" 
     TCGA-05-4249      TCGA-05-4250      TCGA-05-4382      TCGA-05-4384 
"OR5I1 WILD-TYPE" "OR5I1 WILD-TYPE" "OR5I1 WILD-TYPE" "OR5I1 WILD-TYPE" 
     TCGA-05-4390      TCGA-05-4396      TCGA-05-4397      TCGA-05-4398 
"OR5I1 WILD-TYPE"   "OR5I1 MUTATED" "OR5I1 WILD-TYPE" "OR5I1 WILD-TYPE" 
     TCGA-05-4402      TCGA-05-4405      TCGA-05-4415      TCGA-05-4417 
"OR5I1 WILD-TYPE" "OR5I1 WILD-TYPE" "OR5I1 WILD-TYPE" "OR5I1 WILD-TYPE" 
     TCGA-05-4418      TCGA-05-4420      TCGA-05-4424      TCGA-05-4426 
  "OR5I1 MUTATED" "OR5I1 WILD-TYPE"   "OR5I1 MUTATED" "OR5I1 WILD-TYPE" 
     TCGA-05-4427      TCGA-05-4430      TCGA-05-4432      TCGA-05-4433 
"OR5I1 WILD-TYPE" "OR5I1 WILD-TYPE" "OR5I1 WILD-TYPE" "OR5I1 WILD-TYPE" 
     TCGA-05-4434      TCGA-05-5420      TCGA-05-5423      TCGA-05-5425 
"OR5I1 WILD-TYPE" "OR5I1 WILD-TYPE" "OR5I1 WILD-TYPE" "OR5I1 WILD-TYPE" 
     TCGA-05-5429      TCGA-05-5715      TCGA-35-3615      TCGA-35-4122 
"OR5I1 WILD-TYPE" "OR5I1 WILD-TYPE" "OR5I1 WILD-TYPE" "OR5I1 WILD-TYPE" 
     TCGA-35-4123      TCGA-35-5375      TCGA-38-4625      TCGA-38-4626 
"OR5I1 WILD-TYPE" "OR5I1 WILD-TYPE" "OR5I1 WILD-TYPE" "OR5I1 WILD-TYPE" 
     TCGA-38-4627      TCGA-38-4628      TCGA-38-4629      TCGA-38-4630 
"OR5I1 WILD-TYPE" "OR5I1 WILD-TYPE" "OR5I1 WILD-TYPE" "OR5I1 WILD-TYPE" 
     TCGA-38-4631      TCGA-38-4632      TCGA-38-6178      TCGA-44-2655 
"OR5I1 WILD-TYPE" "OR5I1 WILD-TYPE" "OR5I1 WILD-TYPE" "OR5I1 WILD-TYPE" 
     TCGA-44-2656      TCGA-44-2657      TCGA-44-2659      TCGA-44-2661 
"OR5I1 WILD-TYPE" "OR5I1 WILD-TYPE" "OR5I1 WILD-TYPE" "OR5I1 WILD-TYPE" 
     TCGA-44-2662      TCGA-44-2665      TCGA-44-2666      TCGA-44-2668 
"OR5I1 WILD-TYPE" "OR5I1 WILD-TYPE" "OR5I1 WILD-TYPE" "OR5I1 WILD-TYPE" 
     TCGA-44-3396      TCGA-44-3398      TCGA-44-3918      TCGA-44-3919 
"OR5I1 WILD-TYPE" "OR5I1 WILD-TYPE" "OR5I1 WILD-TYPE" "OR5I1 WILD-TYPE" 
     TCGA-44-4112      TCGA-44-5643      TCGA-44-5645      TCGA-44-6144 
"OR5I1 WILD-TYPE" "OR5I1 WILD-TYPE" "OR5I1 WILD-TYPE"   "OR5I1 MUTATED" 
     TCGA-44-6145      TCGA-44-6146      TCGA-44-6147      TCGA-44-6148 
"OR5I1 WILD-TYPE" "OR5I1 WILD-TYPE" "OR5I1 WILD-TYPE" "OR5I1 WILD-TYPE" 
     TCGA-44-6774      TCGA-44-6775      TCGA-44-6776      TCGA-44-6777 
"OR5I1 WILD-TYPE" "OR5I1 WILD-TYPE" "OR5I1 WILD-TYPE" "OR5I1 WILD-TYPE" 
     TCGA-44-6778      TCGA-44-6779      TCGA-49-4486      TCGA-49-4487 
"OR5I1 WILD-TYPE" "OR5I1 WILD-TYPE" "OR5I1 WILD-TYPE" "OR5I1 WILD-TYPE" 
     TCGA-49-4488      TCGA-49-4490      TCGA-49-4494      TCGA-49-4501 
"OR5I1 WILD-TYPE" "OR5I1 WILD-TYPE" "OR5I1 WILD-TYPE" "OR5I1 WILD-TYPE" 
     TCGA-49-4505      TCGA-49-4506      TCGA-49-4507      TCGA-49-4510 
"OR5I1 WILD-TYPE" "OR5I1 WILD-TYPE" "OR5I1 WILD-TYPE" "OR5I1 WILD-TYPE" 
     TCGA-49-4512      TCGA-49-4514      TCGA-49-6742      TCGA-49-6743 
"OR5I1 WILD-TYPE" "OR5I1 WILD-TYPE"   "OR5I1 MUTATED" "OR5I1 WILD-TYPE" 
     TCGA-49-6744      TCGA-49-6745      TCGA-50-5044      TCGA-50-5045 
"OR5I1 WILD-TYPE" "OR5I1 WILD-TYPE" "OR5I1 WILD-TYPE" "OR5I1 WILD-TYPE" 
     TCGA-50-5049      TCGA-50-5051      TCGA-50-5055      TCGA-50-5066 
"OR5I1 WILD-TYPE" "OR5I1 WILD-TYPE" "OR5I1 WILD-TYPE" "OR5I1 WILD-TYPE" 
     TCGA-50-5068      TCGA-50-5072      TCGA-50-5930      TCGA-50-5931 
"OR5I1 WILD-TYPE" "OR5I1 WILD-TYPE" "OR5I1 WILD-TYPE" "OR5I1 WILD-TYPE" 
     TCGA-50-5932      TCGA-50-5933      TCGA-50-5935      TCGA-50-5936 
"OR5I1 WILD-TYPE"   "OR5I1 MUTATED" "OR5I1 WILD-TYPE" "OR5I1 WILD-TYPE" 
     TCGA-50-5939      TCGA-50-5941      TCGA-50-5942      TCGA-50-5944 
"OR5I1 WILD-TYPE"   "OR5I1 MUTATED" "OR5I1 WILD-TYPE" "OR5I1 WILD-TYPE" 
     TCGA-50-5946      TCGA-50-6590      TCGA-50-6591      TCGA-50-6592 
"OR5I1 WILD-TYPE" "OR5I1 WILD-TYPE" "OR5I1 WILD-TYPE" "OR5I1 WILD-TYPE" 
     TCGA-50-6593      TCGA-50-6594      TCGA-50-6595      TCGA-50-6597 
"OR5I1 WILD-TYPE" "OR5I1 WILD-TYPE" "OR5I1 WILD-TYPE" "OR5I1 WILD-TYPE" 
     TCGA-55-1592      TCGA-55-1594      TCGA-55-1595      TCGA-55-1596 
"OR5I1 WILD-TYPE" "OR5I1 WILD-TYPE" "OR5I1 WILD-TYPE" "OR5I1 WILD-TYPE" 
     TCGA-55-5899      TCGA-55-6543      TCGA-55-6642      TCGA-55-6712 
"OR5I1 WILD-TYPE" "OR5I1 WILD-TYPE" "OR5I1 WILD-TYPE" "OR5I1 WILD-TYPE" 
     TCGA-64-1676      TCGA-64-1677      TCGA-64-1678      TCGA-64-1680 
"OR5I1 WILD-TYPE" "OR5I1 WILD-TYPE" "OR5I1 WILD-TYPE" "OR5I1 WILD-TYPE" 
     TCGA-64-5774      TCGA-64-5775      TCGA-64-5778      TCGA-64-5779 
"OR5I1 WILD-TYPE" "OR5I1 WILD-TYPE" "OR5I1 WILD-TYPE" "OR5I1 WILD-TYPE" 
     TCGA-64-5781      TCGA-64-5815      TCGA-67-3770      TCGA-67-3771 
  "OR5I1 MUTATED" "OR5I1 WILD-TYPE" "OR5I1 WILD-TYPE" "OR5I1 WILD-TYPE" 
     TCGA-67-3772      TCGA-67-3773      TCGA-67-3774      TCGA-67-6215 
"OR5I1 WILD-TYPE" "OR5I1 WILD-TYPE" "OR5I1 WILD-TYPE" "OR5I1 WILD-TYPE" 
     TCGA-67-6216      TCGA-67-6217      TCGA-71-6725      TCGA-73-4658 
"OR5I1 WILD-TYPE" "OR5I1 WILD-TYPE" "OR5I1 WILD-TYPE" "OR5I1 WILD-TYPE" 
     TCGA-73-4659      TCGA-73-4662      TCGA-73-4666      TCGA-73-4668 
"OR5I1 WILD-TYPE" "OR5I1 WILD-TYPE" "OR5I1 WILD-TYPE" "OR5I1 WILD-TYPE" 
     TCGA-73-4670      TCGA-73-4675      TCGA-73-4676      TCGA-73-4677 
"OR5I1 WILD-TYPE" "OR5I1 WILD-TYPE" "OR5I1 WILD-TYPE" "OR5I1 WILD-TYPE" 
     TCGA-91-6828      TCGA-91-6829      TCGA-91-6831      TCGA-91-6835 
"OR5I1 WILD-TYPE" "OR5I1 WILD-TYPE" "OR5I1 WILD-TYPE" "OR5I1 WILD-TYPE" 
     TCGA-91-6836 
"OR5I1 WILD-TYPE" 
     TCGA-05-4249      TCGA-05-4250      TCGA-05-4382      TCGA-05-4384 
"OR5I1 WILD-TYPE" "OR5I1 WILD-TYPE" "OR5I1 WILD-TYPE" "OR5I1 WILD-TYPE" 
     TCGA-05-4390      TCGA-05-4396      TCGA-05-4397      TCGA-05-4398 
"OR5I1 WILD-TYPE"   "OR5I1 MUTATED" "OR5I1 WILD-TYPE" "OR5I1 WILD-TYPE" 
     TCGA-05-4402      TCGA-05-4405      TCGA-05-4415      TCGA-05-4417 
"OR5I1 WILD-TYPE" "OR5I1 WILD-TYPE" "OR5I1 WILD-TYPE" "OR5I1 WILD-TYPE" 
     TCGA-05-4418      TCGA-05-4420      TCGA-05-4424      TCGA-05-4426 
  "OR5I1 MUTATED" "OR5I1 WILD-TYPE"   "OR5I1 MUTATED" "OR5I1 WILD-TYPE" 
     TCGA-05-4427      TCGA-05-4430      TCGA-05-4432      TCGA-05-4433 
"OR5I1 WILD-TYPE" "OR5I1 WILD-TYPE" "OR5I1 WILD-TYPE" "OR5I1 WILD-TYPE" 
     TCGA-05-4434      TCGA-05-5420      TCGA-05-5423      TCGA-05-5425 
"OR5I1 WILD-TYPE" "OR5I1 WILD-TYPE" "OR5I1 WILD-TYPE" "OR5I1 WILD-TYPE" 
     TCGA-05-5429      TCGA-05-5715      TCGA-35-3615      TCGA-35-4122 
"OR5I1 WILD-TYPE" "OR5I1 WILD-TYPE" "OR5I1 WILD-TYPE" "OR5I1 WILD-TYPE" 
     TCGA-35-4123      TCGA-35-5375      TCGA-38-4625      TCGA-38-4626 
"OR5I1 WILD-TYPE" "OR5I1 WILD-TYPE" "OR5I1 WILD-TYPE" "OR5I1 WILD-TYPE" 
     TCGA-38-4627      TCGA-38-4628      TCGA-38-4629      TCGA-38-4630 
"OR5I1 WILD-TYPE" "OR5I1 WILD-TYPE" "OR5I1 WILD-TYPE" "OR5I1 WILD-TYPE" 
     TCGA-38-4631      TCGA-38-4632      TCGA-38-6178      TCGA-44-2655 
"OR5I1 WILD-TYPE" "OR5I1 WILD-TYPE" "OR5I1 WILD-TYPE" "OR5I1 WILD-TYPE" 
     TCGA-44-2656      TCGA-44-2657      TCGA-44-2659      TCGA-44-2661 
"OR5I1 WILD-TYPE" "OR5I1 WILD-TYPE" "OR5I1 WILD-TYPE" "OR5I1 WILD-TYPE" 
     TCGA-44-2662      TCGA-44-2665      TCGA-44-2666      TCGA-44-2668 
"OR5I1 WILD-TYPE" "OR5I1 WILD-TYPE" "OR5I1 WILD-TYPE" "OR5I1 WILD-TYPE" 
     TCGA-44-3396      TCGA-44-3398      TCGA-44-3918      TCGA-44-3919 
"OR5I1 WILD-TYPE" "OR5I1 WILD-TYPE" "OR5I1 WILD-TYPE" "OR5I1 WILD-TYPE" 
     TCGA-44-4112      TCGA-44-5643      TCGA-44-5645      TCGA-44-6144 
"OR5I1 WILD-TYPE" "OR5I1 WILD-TYPE" "OR5I1 WILD-TYPE"   "OR5I1 MUTATED" 
     TCGA-44-6145      TCGA-44-6146      TCGA-44-6147      TCGA-44-6148 
"OR5I1 WILD-TYPE" "OR5I1 WILD-TYPE" "OR5I1 WILD-TYPE" "OR5I1 WILD-TYPE" 
     TCGA-44-6774      TCGA-44-6775      TCGA-44-6776      TCGA-44-6777 
"OR5I1 WILD-TYPE" "OR5I1 WILD-TYPE" "OR5I1 WILD-TYPE" "OR5I1 WILD-TYPE" 
     TCGA-44-6778      TCGA-44-6779      TCGA-49-4486      TCGA-49-4487 
"OR5I1 WILD-TYPE" "OR5I1 WILD-TYPE" "OR5I1 WILD-TYPE" "OR5I1 WILD-TYPE" 
     TCGA-49-4488      TCGA-49-4490      TCGA-49-4494      TCGA-49-4501 
"OR5I1 WILD-TYPE" "OR5I1 WILD-TYPE" "OR5I1 WILD-TYPE" "OR5I1 WILD-TYPE" 
     TCGA-49-4505      TCGA-49-4506      TCGA-49-4507      TCGA-49-4510 
"OR5I1 WILD-TYPE" "OR5I1 WILD-TYPE" "OR5I1 WILD-TYPE" "OR5I1 WILD-TYPE" 
     TCGA-49-4512      TCGA-49-4514      TCGA-49-6742      TCGA-49-6743 
"OR5I1 WILD-TYPE" "OR5I1 WILD-TYPE"   "OR5I1 MUTATED" "OR5I1 WILD-TYPE" 
     TCGA-49-6744      TCGA-49-6745      TCGA-50-5044      TCGA-50-5045 
"OR5I1 WILD-TYPE" "OR5I1 WILD-TYPE" "OR5I1 WILD-TYPE" "OR5I1 WILD-TYPE" 
     TCGA-50-5049      TCGA-50-5051      TCGA-50-5055      TCGA-50-5066 
"OR5I1 WILD-TYPE" "OR5I1 WILD-TYPE" "OR5I1 WILD-TYPE" "OR5I1 WILD-TYPE" 
     TCGA-50-5068      TCGA-50-5072      TCGA-50-5930      TCGA-50-5931 
"OR5I1 WILD-TYPE" "OR5I1 WILD-TYPE" "OR5I1 WILD-TYPE" "OR5I1 WILD-TYPE" 
     TCGA-50-5932      TCGA-50-5933      TCGA-50-5935      TCGA-50-5936 
"OR5I1 WILD-TYPE"   "OR5I1 MUTATED" "OR5I1 WILD-TYPE" "OR5I1 WILD-TYPE" 
     TCGA-50-5939      TCGA-50-5941      TCGA-50-5942      TCGA-50-5944 
"OR5I1 WILD-TYPE"   "OR5I1 MUTATED" "OR5I1 WILD-TYPE" "OR5I1 WILD-TYPE" 
     TCGA-50-5946      TCGA-50-6590      TCGA-50-6591      TCGA-50-6592 
"OR5I1 WILD-TYPE" "OR5I1 WILD-TYPE" "OR5I1 WILD-TYPE" "OR5I1 WILD-TYPE" 
     TCGA-50-6593      TCGA-50-6594      TCGA-50-6595      TCGA-50-6597 
"OR5I1 WILD-TYPE" "OR5I1 WILD-TYPE" "OR5I1 WILD-TYPE" "OR5I1 WILD-TYPE" 
     TCGA-55-1592      TCGA-55-1594      TCGA-55-1595      TCGA-55-1596 
"OR5I1 WILD-TYPE" "OR5I1 WILD-TYPE" "OR5I1 WILD-TYPE" "OR5I1 WILD-TYPE" 
     TCGA-55-5899      TCGA-55-6543      TCGA-55-6642      TCGA-55-6712 
"OR5I1 WILD-TYPE" "OR5I1 WILD-TYPE" "OR5I1 WILD-TYPE" "OR5I1 WILD-TYPE" 
     TCGA-64-1676      TCGA-64-1677      TCGA-64-1678      TCGA-64-1680 
"OR5I1 WILD-TYPE" "OR5I1 WILD-TYPE" "OR5I1 WILD-TYPE" "OR5I1 WILD-TYPE" 
     TCGA-64-5774      TCGA-64-5775      TCGA-64-5778      TCGA-64-5779 
"OR5I1 WILD-TYPE" "OR5I1 WILD-TYPE" "OR5I1 WILD-TYPE" "OR5I1 WILD-TYPE" 
     TCGA-64-5781      TCGA-64-5815      TCGA-67-3770      TCGA-67-3771 
  "OR5I1 MUTATED" "OR5I1 WILD-TYPE" "OR5I1 WILD-TYPE" "OR5I1 WILD-TYPE" 
     TCGA-67-3772      TCGA-67-3773      TCGA-67-3774      TCGA-67-6215 
"OR5I1 WILD-TYPE" "OR5I1 WILD-TYPE" "OR5I1 WILD-TYPE" "OR5I1 WILD-TYPE" 
     TCGA-67-6216      TCGA-67-6217      TCGA-71-6725      TCGA-73-4658 
"OR5I1 WILD-TYPE" "OR5I1 WILD-TYPE" "OR5I1 WILD-TYPE" "OR5I1 WILD-TYPE" 
     TCGA-73-4659      TCGA-73-4662      TCGA-73-4666      TCGA-73-4668 
"OR5I1 WILD-TYPE" "OR5I1 WILD-TYPE" "OR5I1 WILD-TYPE" "OR5I1 WILD-TYPE" 
     TCGA-73-4670      TCGA-73-4675      TCGA-73-4676      TCGA-73-4677 
"OR5I1 WILD-TYPE" "OR5I1 WILD-TYPE" "OR5I1 WILD-TYPE" "OR5I1 WILD-TYPE" 
     TCGA-91-6828      TCGA-91-6829      TCGA-91-6831      TCGA-91-6835 
"OR5I1 WILD-TYPE" "OR5I1 WILD-TYPE" "OR5I1 WILD-TYPE" "OR5I1 WILD-TYPE" 
     TCGA-91-6836 
"OR5I1 WILD-TYPE" 
[1] "hr=" "1.3"
D36V2, continuous
D36V3, binary
[1] "tbl2"
                 cls
clus              [,1] [,2]
  OR5I1 MUTATED      3    8
  OR5I1 WILD-TYPE   90   71
        clus
vv       OR5I1 MUTATED OR5I1 WILD-TYPE
  FEMALE             3              90
  MALE               8              71
D36V4, continuous
D36V5, multiclass
D36V6, multiclass
    clus
vv   OR5I1 MUTATED OR5I1 WILD-TYPE
  T1             2              39
  T2             4             104
  T3             3              11
  T4             2               6
D36V7, multiclass
       clus
vv      OR5I1 MUTATED OR5I1 WILD-TYPE
  N0                4              91
  N1                3              34
  N2+N3             4              31
D36V8, multiclass
    clus
vv   OR5I1 MUTATED OR5I1 WILD-TYPE
  M0            10             127
  M1             0               9
  MX             1              21
D36V9, multiclass
     clus
vv    OR5I1 MUTATED OR5I1 WILD-TYPE
  I               3              85
  II              3              30
  III             5              34
  IV              0               9
D36V10, binary
[1] "tbl2"
                 cls
clus              [,1] [,2]
  OR5I1 MUTATED      1   10
  OR5I1 WILD-TYPE   15  146
     clus
vv    OR5I1 MUTATED OR5I1 WILD-TYPE
  NO              1              15
  YES            10             146
D36V11, continuous
D36V12, continuous
D36V13, multiclass
                                             clus
vv                                            OR5I1 MUTATED OR5I1 WILD-TYPE
  CURRENT REFORMED SMOKER FOR < OR = 15 YEARS             3              59
  CURRENT REFORMED SMOKER FOR > 15 YEARS                  3              43
  CURRENT SMOKER                                          3              25
  LIFELONG NON-SMOKER                                     1              23
D36V14, continuous

Clustering(37) Variable = OR4C15 MUTATION ANALYSIS
D37V1, survival
                  sevent
clus2               0  1
  OR4C15 MUTATED   10  2
  OR4C15 WILD-TYPE 89 48
  OR4C15 MUTATED OR4C15 WILD-TYPE 
              12              137 
  OR4C15 MUTATED OR4C15 WILD-TYPE 
               2               48 
$`OR4C15 MUTATED`
TCGA-05-4396 TCGA-05-4398 TCGA-05-4420 TCGA-05-4430 TCGA-35-5375 TCGA-44-3398 
        9.96        47.05        29.95        25.02         8.68         8.32 
TCGA-49-6743 TCGA-50-5066 TCGA-50-5941 TCGA-55-6712 TCGA-73-4668 TCGA-91-6829 
       12.13         9.76         9.37         0.79        15.35        41.33 

$`OR4C15 WILD-TYPE`
TCGA-05-4249 TCGA-05-4250 TCGA-05-4382 TCGA-05-4384 TCGA-05-4390 TCGA-05-4397 
       38.07         3.98        19.92        14.01        37.02        24.03 
TCGA-05-4402 TCGA-05-4405 TCGA-05-4415 TCGA-05-4417 TCGA-05-4418 TCGA-05-4424 
        8.02        20.05         2.96        14.93         8.98        30.02 
TCGA-05-4426 TCGA-05-4427 TCGA-05-4432 TCGA-05-4433 TCGA-05-4434 TCGA-05-5420 
       26.01        26.01        25.02        24.00        15.02         1.02 
TCGA-05-5423 TCGA-05-5425 TCGA-05-5429 TCGA-05-5715 TCGA-35-3615 TCGA-35-4122 
        4.96         2.96         0.99         2.04         0.46         7.36 
TCGA-35-4123 TCGA-38-4625 TCGA-38-4626 TCGA-38-4627 TCGA-38-4628 TCGA-38-4629 
        5.95        47.61        85.32        37.71        49.02        28.37 
TCGA-38-4630 TCGA-38-4631 TCGA-38-4632 TCGA-38-6178 TCGA-44-2655 TCGA-44-2656 
       35.28        11.64        44.61         5.19        18.87        19.10 
TCGA-44-2657 TCGA-44-2659 TCGA-44-2661 TCGA-44-2662 TCGA-44-2665 TCGA-44-2666 
       13.15        17.39         3.39        15.78        13.15         3.19 
TCGA-44-2668 TCGA-44-3396 TCGA-44-3918 TCGA-44-3919 TCGA-44-4112 TCGA-44-5643 
        8.09        10.22         6.44         6.21         4.60         3.48 
TCGA-44-5645 TCGA-44-6144 TCGA-44-6145 TCGA-44-6146 TCGA-44-6147 TCGA-44-6148 
        6.84         0.30         3.35         9.93         7.76         3.12 
TCGA-44-6774 TCGA-44-6775 TCGA-44-6776 TCGA-44-6777 TCGA-44-6778 TCGA-44-6779 
        5.42         2.70        63.72        32.45        36.49        16.41 
TCGA-49-4486 TCGA-49-4487 TCGA-49-4488 TCGA-49-4490 TCGA-49-4494 TCGA-49-4501 
       76.21        28.11        28.57        12.66        35.54        46.72 
TCGA-49-4505 TCGA-49-4506 TCGA-49-4507 TCGA-49-4510 TCGA-49-4512 TCGA-49-4514 
       14.07        32.84         8.81        29.46        29.75        43.20 
TCGA-49-6742 TCGA-49-6744 TCGA-49-6745 TCGA-50-5044 TCGA-50-5045 TCGA-50-5049 
       15.02        12.99         4.93        20.48        71.47        48.82 
TCGA-50-5051 TCGA-50-5055 TCGA-50-5068 TCGA-50-5072 TCGA-50-5930 TCGA-50-5931 
       14.96        25.81        49.28         8.05         9.27         8.78 
TCGA-50-5932 TCGA-50-5933 TCGA-50-5935 TCGA-50-5936 TCGA-50-5939 TCGA-50-5942 
       35.87        77.88        21.47         8.45        15.12         4.44 
TCGA-50-5944 TCGA-50-5946 TCGA-50-6590 TCGA-50-6591 TCGA-50-6592 TCGA-50-6593 
       12.26        11.47        42.31         3.88        25.51        11.05 
TCGA-50-6594 TCGA-50-6595 TCGA-50-6597 TCGA-55-1592 TCGA-55-1594 TCGA-55-1595 
       12.16         6.21        33.37        23.05        38.73        48.62 
TCGA-55-1596 TCGA-55-5899 TCGA-55-6543 TCGA-55-6642 TCGA-64-1676 TCGA-64-1677 
       45.17         2.86         0.07        32.61        56.81        20.65 
TCGA-64-1678 TCGA-64-1680 TCGA-64-5774 TCGA-64-5775 TCGA-64-5778 TCGA-64-5779 
       39.09        37.02        83.84         0.10        30.44        16.67 
TCGA-64-5781 TCGA-64-5815 TCGA-67-3770 TCGA-67-3771 TCGA-67-3772 TCGA-67-3773 
       39.52         7.33         0.99         1.97         0.59         2.04 
TCGA-67-3774 TCGA-67-6215 TCGA-67-6216 TCGA-67-6217 TCGA-71-6725 TCGA-73-4658 
        0.59         0.89         0.69        13.87         2.01        52.57 
TCGA-73-4659 TCGA-73-4662 TCGA-73-4666 TCGA-73-4670 TCGA-73-4675 TCGA-73-4676 
       23.38        29.95        20.28         0.46         1.32         4.01 
TCGA-73-4677 TCGA-91-6828 TCGA-91-6831 TCGA-91-6835 TCGA-91-6836 
        1.25         1.22         1.28         1.15         0.36 

  OR4C15 MUTATED OR4C15 WILD-TYPE 
            0.79             0.07 
  OR4C15 MUTATED OR4C15 WILD-TYPE 
           47.05            85.32 
  OR4C15 MUTATED OR4C15 WILD-TYPE 
          11.045           14.010 
[1] "0.8 - 47.0 (11.0)" "0.1 - 85.3 (14.0)"
      TCGA-05-4249       TCGA-05-4250       TCGA-05-4382       TCGA-05-4384 
"OR4C15 WILD-TYPE" "OR4C15 WILD-TYPE" "OR4C15 WILD-TYPE" "OR4C15 WILD-TYPE" 
      TCGA-05-4390       TCGA-05-4396       TCGA-05-4397       TCGA-05-4398 
"OR4C15 WILD-TYPE"   "OR4C15 MUTATED" "OR4C15 WILD-TYPE"   "OR4C15 MUTATED" 
      TCGA-05-4402       TCGA-05-4405       TCGA-05-4415       TCGA-05-4417 
"OR4C15 WILD-TYPE" "OR4C15 WILD-TYPE" "OR4C15 WILD-TYPE" "OR4C15 WILD-TYPE" 
      TCGA-05-4418       TCGA-05-4420       TCGA-05-4424       TCGA-05-4426 
"OR4C15 WILD-TYPE"   "OR4C15 MUTATED" "OR4C15 WILD-TYPE" "OR4C15 WILD-TYPE" 
      TCGA-05-4427       TCGA-05-4430       TCGA-05-4432       TCGA-05-4433 
"OR4C15 WILD-TYPE"   "OR4C15 MUTATED" "OR4C15 WILD-TYPE" "OR4C15 WILD-TYPE" 
      TCGA-05-4434       TCGA-05-5420       TCGA-05-5423       TCGA-05-5425 
"OR4C15 WILD-TYPE" "OR4C15 WILD-TYPE" "OR4C15 WILD-TYPE" "OR4C15 WILD-TYPE" 
      TCGA-05-5429       TCGA-05-5715       TCGA-35-3615       TCGA-35-4122 
"OR4C15 WILD-TYPE" "OR4C15 WILD-TYPE" "OR4C15 WILD-TYPE" "OR4C15 WILD-TYPE" 
      TCGA-35-4123       TCGA-35-5375       TCGA-38-4625       TCGA-38-4626 
"OR4C15 WILD-TYPE"   "OR4C15 MUTATED" "OR4C15 WILD-TYPE" "OR4C15 WILD-TYPE" 
      TCGA-38-4627       TCGA-38-4628       TCGA-38-4629       TCGA-38-4630 
"OR4C15 WILD-TYPE" "OR4C15 WILD-TYPE" "OR4C15 WILD-TYPE" "OR4C15 WILD-TYPE" 
      TCGA-38-4631       TCGA-38-4632       TCGA-38-6178       TCGA-44-2655 
"OR4C15 WILD-TYPE" "OR4C15 WILD-TYPE" "OR4C15 WILD-TYPE" "OR4C15 WILD-TYPE" 
      TCGA-44-2656       TCGA-44-2657       TCGA-44-2659       TCGA-44-2661 
"OR4C15 WILD-TYPE" "OR4C15 WILD-TYPE" "OR4C15 WILD-TYPE" "OR4C15 WILD-TYPE" 
      TCGA-44-2662       TCGA-44-2665       TCGA-44-2666       TCGA-44-2668 
"OR4C15 WILD-TYPE" "OR4C15 WILD-TYPE" "OR4C15 WILD-TYPE" "OR4C15 WILD-TYPE" 
      TCGA-44-3396       TCGA-44-3398       TCGA-44-3918       TCGA-44-3919 
"OR4C15 WILD-TYPE"   "OR4C15 MUTATED" "OR4C15 WILD-TYPE" "OR4C15 WILD-TYPE" 
      TCGA-44-4112       TCGA-44-5643       TCGA-44-5645       TCGA-44-6144 
"OR4C15 WILD-TYPE" "OR4C15 WILD-TYPE" "OR4C15 WILD-TYPE" "OR4C15 WILD-TYPE" 
      TCGA-44-6145       TCGA-44-6146       TCGA-44-6147       TCGA-44-6148 
"OR4C15 WILD-TYPE" "OR4C15 WILD-TYPE" "OR4C15 WILD-TYPE" "OR4C15 WILD-TYPE" 
      TCGA-44-6774       TCGA-44-6775       TCGA-44-6776       TCGA-44-6777 
"OR4C15 WILD-TYPE" "OR4C15 WILD-TYPE" "OR4C15 WILD-TYPE" "OR4C15 WILD-TYPE" 
      TCGA-44-6778       TCGA-44-6779       TCGA-49-4486       TCGA-49-4487 
"OR4C15 WILD-TYPE" "OR4C15 WILD-TYPE" "OR4C15 WILD-TYPE" "OR4C15 WILD-TYPE" 
      TCGA-49-4488       TCGA-49-4490       TCGA-49-4494       TCGA-49-4501 
"OR4C15 WILD-TYPE" "OR4C15 WILD-TYPE" "OR4C15 WILD-TYPE" "OR4C15 WILD-TYPE" 
      TCGA-49-4505       TCGA-49-4506       TCGA-49-4507       TCGA-49-4510 
"OR4C15 WILD-TYPE" "OR4C15 WILD-TYPE" "OR4C15 WILD-TYPE" "OR4C15 WILD-TYPE" 
      TCGA-49-4512       TCGA-49-4514       TCGA-49-6742       TCGA-49-6743 
"OR4C15 WILD-TYPE" "OR4C15 WILD-TYPE" "OR4C15 WILD-TYPE"   "OR4C15 MUTATED" 
      TCGA-49-6744       TCGA-49-6745       TCGA-50-5044       TCGA-50-5045 
"OR4C15 WILD-TYPE" "OR4C15 WILD-TYPE" "OR4C15 WILD-TYPE" "OR4C15 WILD-TYPE" 
      TCGA-50-5049       TCGA-50-5051       TCGA-50-5055       TCGA-50-5066 
"OR4C15 WILD-TYPE" "OR4C15 WILD-TYPE" "OR4C15 WILD-TYPE"   "OR4C15 MUTATED" 
      TCGA-50-5068       TCGA-50-5072       TCGA-50-5930       TCGA-50-5931 
"OR4C15 WILD-TYPE" "OR4C15 WILD-TYPE" "OR4C15 WILD-TYPE" "OR4C15 WILD-TYPE" 
      TCGA-50-5932       TCGA-50-5933       TCGA-50-5935       TCGA-50-5936 
"OR4C15 WILD-TYPE" "OR4C15 WILD-TYPE" "OR4C15 WILD-TYPE" "OR4C15 WILD-TYPE" 
      TCGA-50-5939       TCGA-50-5941       TCGA-50-5942       TCGA-50-5944 
"OR4C15 WILD-TYPE"   "OR4C15 MUTATED" "OR4C15 WILD-TYPE" "OR4C15 WILD-TYPE" 
      TCGA-50-5946       TCGA-50-6590       TCGA-50-6591       TCGA-50-6592 
"OR4C15 WILD-TYPE" "OR4C15 WILD-TYPE" "OR4C15 WILD-TYPE" "OR4C15 WILD-TYPE" 
      TCGA-50-6593       TCGA-50-6594       TCGA-50-6595       TCGA-50-6597 
"OR4C15 WILD-TYPE" "OR4C15 WILD-TYPE" "OR4C15 WILD-TYPE" "OR4C15 WILD-TYPE" 
      TCGA-55-1592       TCGA-55-1594       TCGA-55-1595       TCGA-55-1596 
"OR4C15 WILD-TYPE" "OR4C15 WILD-TYPE" "OR4C15 WILD-TYPE" "OR4C15 WILD-TYPE" 
      TCGA-55-5899       TCGA-55-6543       TCGA-55-6642       TCGA-55-6712 
"OR4C15 WILD-TYPE" "OR4C15 WILD-TYPE" "OR4C15 WILD-TYPE"   "OR4C15 MUTATED" 
      TCGA-64-1676       TCGA-64-1677       TCGA-64-1678       TCGA-64-1680 
"OR4C15 WILD-TYPE" "OR4C15 WILD-TYPE" "OR4C15 WILD-TYPE" "OR4C15 WILD-TYPE" 
      TCGA-64-5774       TCGA-64-5775       TCGA-64-5778       TCGA-64-5779 
"OR4C15 WILD-TYPE" "OR4C15 WILD-TYPE" "OR4C15 WILD-TYPE" "OR4C15 WILD-TYPE" 
      TCGA-64-5781       TCGA-64-5815       TCGA-67-3770       TCGA-67-3771 
"OR4C15 WILD-TYPE" "OR4C15 WILD-TYPE" "OR4C15 WILD-TYPE" "OR4C15 WILD-TYPE" 
      TCGA-67-3772       TCGA-67-3773       TCGA-67-3774       TCGA-67-6215 
"OR4C15 WILD-TYPE" "OR4C15 WILD-TYPE" "OR4C15 WILD-TYPE" "OR4C15 WILD-TYPE" 
      TCGA-67-6216       TCGA-67-6217       TCGA-71-6725       TCGA-73-4658 
"OR4C15 WILD-TYPE" "OR4C15 WILD-TYPE" "OR4C15 WILD-TYPE" "OR4C15 WILD-TYPE" 
      TCGA-73-4659       TCGA-73-4662       TCGA-73-4666       TCGA-73-4668 
"OR4C15 WILD-TYPE" "OR4C15 WILD-TYPE" "OR4C15 WILD-TYPE"   "OR4C15 MUTATED" 
      TCGA-73-4670       TCGA-73-4675       TCGA-73-4676       TCGA-73-4677 
"OR4C15 WILD-TYPE" "OR4C15 WILD-TYPE" "OR4C15 WILD-TYPE" "OR4C15 WILD-TYPE" 
      TCGA-91-6828       TCGA-91-6829       TCGA-91-6831       TCGA-91-6835 
"OR4C15 WILD-TYPE"   "OR4C15 MUTATED" "OR4C15 WILD-TYPE" "OR4C15 WILD-TYPE" 
      TCGA-91-6836 
"OR4C15 WILD-TYPE" 
      TCGA-05-4249       TCGA-05-4250       TCGA-05-4382       TCGA-05-4384 
"OR4C15 WILD-TYPE" "OR4C15 WILD-TYPE" "OR4C15 WILD-TYPE" "OR4C15 WILD-TYPE" 
      TCGA-05-4390       TCGA-05-4396       TCGA-05-4397       TCGA-05-4398 
"OR4C15 WILD-TYPE"   "OR4C15 MUTATED" "OR4C15 WILD-TYPE"   "OR4C15 MUTATED" 
      TCGA-05-4402       TCGA-05-4405       TCGA-05-4415       TCGA-05-4417 
"OR4C15 WILD-TYPE" "OR4C15 WILD-TYPE" "OR4C15 WILD-TYPE" "OR4C15 WILD-TYPE" 
      TCGA-05-4418       TCGA-05-4420       TCGA-05-4424       TCGA-05-4426 
"OR4C15 WILD-TYPE"   "OR4C15 MUTATED" "OR4C15 WILD-TYPE" "OR4C15 WILD-TYPE" 
      TCGA-05-4427       TCGA-05-4430       TCGA-05-4432       TCGA-05-4433 
"OR4C15 WILD-TYPE"   "OR4C15 MUTATED" "OR4C15 WILD-TYPE" "OR4C15 WILD-TYPE" 
      TCGA-05-4434       TCGA-05-5420       TCGA-05-5423       TCGA-05-5425 
"OR4C15 WILD-TYPE" "OR4C15 WILD-TYPE" "OR4C15 WILD-TYPE" "OR4C15 WILD-TYPE" 
      TCGA-05-5429       TCGA-05-5715       TCGA-35-3615       TCGA-35-4122 
"OR4C15 WILD-TYPE" "OR4C15 WILD-TYPE" "OR4C15 WILD-TYPE" "OR4C15 WILD-TYPE" 
      TCGA-35-4123       TCGA-35-5375       TCGA-38-4625       TCGA-38-4626 
"OR4C15 WILD-TYPE"   "OR4C15 MUTATED" "OR4C15 WILD-TYPE" "OR4C15 WILD-TYPE" 
      TCGA-38-4627       TCGA-38-4628       TCGA-38-4629       TCGA-38-4630 
"OR4C15 WILD-TYPE" "OR4C15 WILD-TYPE" "OR4C15 WILD-TYPE" "OR4C15 WILD-TYPE" 
      TCGA-38-4631       TCGA-38-4632       TCGA-38-6178       TCGA-44-2655 
"OR4C15 WILD-TYPE" "OR4C15 WILD-TYPE" "OR4C15 WILD-TYPE" "OR4C15 WILD-TYPE" 
      TCGA-44-2656       TCGA-44-2657       TCGA-44-2659       TCGA-44-2661 
"OR4C15 WILD-TYPE" "OR4C15 WILD-TYPE" "OR4C15 WILD-TYPE" "OR4C15 WILD-TYPE" 
      TCGA-44-2662       TCGA-44-2665       TCGA-44-2666       TCGA-44-2668 
"OR4C15 WILD-TYPE" "OR4C15 WILD-TYPE" "OR4C15 WILD-TYPE" "OR4C15 WILD-TYPE" 
      TCGA-44-3396       TCGA-44-3398       TCGA-44-3918       TCGA-44-3919 
"OR4C15 WILD-TYPE"   "OR4C15 MUTATED" "OR4C15 WILD-TYPE" "OR4C15 WILD-TYPE" 
      TCGA-44-4112       TCGA-44-5643       TCGA-44-5645       TCGA-44-6144 
"OR4C15 WILD-TYPE" "OR4C15 WILD-TYPE" "OR4C15 WILD-TYPE" "OR4C15 WILD-TYPE" 
      TCGA-44-6145       TCGA-44-6146       TCGA-44-6147       TCGA-44-6148 
"OR4C15 WILD-TYPE" "OR4C15 WILD-TYPE" "OR4C15 WILD-TYPE" "OR4C15 WILD-TYPE" 
      TCGA-44-6774       TCGA-44-6775       TCGA-44-6776       TCGA-44-6777 
"OR4C15 WILD-TYPE" "OR4C15 WILD-TYPE" "OR4C15 WILD-TYPE" "OR4C15 WILD-TYPE" 
      TCGA-44-6778       TCGA-44-6779       TCGA-49-4486       TCGA-49-4487 
"OR4C15 WILD-TYPE" "OR4C15 WILD-TYPE" "OR4C15 WILD-TYPE" "OR4C15 WILD-TYPE" 
      TCGA-49-4488       TCGA-49-4490       TCGA-49-4494       TCGA-49-4501 
"OR4C15 WILD-TYPE" "OR4C15 WILD-TYPE" "OR4C15 WILD-TYPE" "OR4C15 WILD-TYPE" 
      TCGA-49-4505       TCGA-49-4506       TCGA-49-4507       TCGA-49-4510 
"OR4C15 WILD-TYPE" "OR4C15 WILD-TYPE" "OR4C15 WILD-TYPE" "OR4C15 WILD-TYPE" 
      TCGA-49-4512       TCGA-49-4514       TCGA-49-6742       TCGA-49-6743 
"OR4C15 WILD-TYPE" "OR4C15 WILD-TYPE" "OR4C15 WILD-TYPE"   "OR4C15 MUTATED" 
      TCGA-49-6744       TCGA-49-6745       TCGA-50-5044       TCGA-50-5045 
"OR4C15 WILD-TYPE" "OR4C15 WILD-TYPE" "OR4C15 WILD-TYPE" "OR4C15 WILD-TYPE" 
      TCGA-50-5049       TCGA-50-5051       TCGA-50-5055       TCGA-50-5066 
"OR4C15 WILD-TYPE" "OR4C15 WILD-TYPE" "OR4C15 WILD-TYPE"   "OR4C15 MUTATED" 
      TCGA-50-5068       TCGA-50-5072       TCGA-50-5930       TCGA-50-5931 
"OR4C15 WILD-TYPE" "OR4C15 WILD-TYPE" "OR4C15 WILD-TYPE" "OR4C15 WILD-TYPE" 
      TCGA-50-5932       TCGA-50-5933       TCGA-50-5935       TCGA-50-5936 
"OR4C15 WILD-TYPE" "OR4C15 WILD-TYPE" "OR4C15 WILD-TYPE" "OR4C15 WILD-TYPE" 
      TCGA-50-5939       TCGA-50-5941       TCGA-50-5942       TCGA-50-5944 
"OR4C15 WILD-TYPE"   "OR4C15 MUTATED" "OR4C15 WILD-TYPE" "OR4C15 WILD-TYPE" 
      TCGA-50-5946       TCGA-50-6590       TCGA-50-6591       TCGA-50-6592 
"OR4C15 WILD-TYPE" "OR4C15 WILD-TYPE" "OR4C15 WILD-TYPE" "OR4C15 WILD-TYPE" 
      TCGA-50-6593       TCGA-50-6594       TCGA-50-6595       TCGA-50-6597 
"OR4C15 WILD-TYPE" "OR4C15 WILD-TYPE" "OR4C15 WILD-TYPE" "OR4C15 WILD-TYPE" 
      TCGA-55-1592       TCGA-55-1594       TCGA-55-1595       TCGA-55-1596 
"OR4C15 WILD-TYPE" "OR4C15 WILD-TYPE" "OR4C15 WILD-TYPE" "OR4C15 WILD-TYPE" 
      TCGA-55-5899       TCGA-55-6543       TCGA-55-6642       TCGA-55-6712 
"OR4C15 WILD-TYPE" "OR4C15 WILD-TYPE" "OR4C15 WILD-TYPE"   "OR4C15 MUTATED" 
      TCGA-64-1676       TCGA-64-1677       TCGA-64-1678       TCGA-64-1680 
"OR4C15 WILD-TYPE" "OR4C15 WILD-TYPE" "OR4C15 WILD-TYPE" "OR4C15 WILD-TYPE" 
      TCGA-64-5774       TCGA-64-5775       TCGA-64-5778       TCGA-64-5779 
"OR4C15 WILD-TYPE" "OR4C15 WILD-TYPE" "OR4C15 WILD-TYPE" "OR4C15 WILD-TYPE" 
      TCGA-64-5781       TCGA-64-5815       TCGA-67-3770       TCGA-67-3771 
"OR4C15 WILD-TYPE" "OR4C15 WILD-TYPE" "OR4C15 WILD-TYPE" "OR4C15 WILD-TYPE" 
      TCGA-67-3772       TCGA-67-3773       TCGA-67-3774       TCGA-67-6215 
"OR4C15 WILD-TYPE" "OR4C15 WILD-TYPE" "OR4C15 WILD-TYPE" "OR4C15 WILD-TYPE" 
      TCGA-67-6216       TCGA-67-6217       TCGA-71-6725       TCGA-73-4658 
"OR4C15 WILD-TYPE" "OR4C15 WILD-TYPE" "OR4C15 WILD-TYPE" "OR4C15 WILD-TYPE" 
      TCGA-73-4659       TCGA-73-4662       TCGA-73-4666       TCGA-73-4668 
"OR4C15 WILD-TYPE" "OR4C15 WILD-TYPE" "OR4C15 WILD-TYPE"   "OR4C15 MUTATED" 
      TCGA-73-4670       TCGA-73-4675       TCGA-73-4676       TCGA-73-4677 
"OR4C15 WILD-TYPE" "OR4C15 WILD-TYPE" "OR4C15 WILD-TYPE" "OR4C15 WILD-TYPE" 
      TCGA-91-6828       TCGA-91-6829       TCGA-91-6831       TCGA-91-6835 
"OR4C15 WILD-TYPE"   "OR4C15 MUTATED" "OR4C15 WILD-TYPE" "OR4C15 WILD-TYPE" 
      TCGA-91-6836 
"OR4C15 WILD-TYPE" 
      TCGA-05-4249       TCGA-05-4250       TCGA-05-4382       TCGA-05-4384 
"OR4C15 WILD-TYPE" "OR4C15 WILD-TYPE" "OR4C15 WILD-TYPE" "OR4C15 WILD-TYPE" 
      TCGA-05-4390       TCGA-05-4396       TCGA-05-4397       TCGA-05-4398 
"OR4C15 WILD-TYPE"   "OR4C15 MUTATED" "OR4C15 WILD-TYPE"   "OR4C15 MUTATED" 
      TCGA-05-4402       TCGA-05-4405       TCGA-05-4415       TCGA-05-4417 
"OR4C15 WILD-TYPE" "OR4C15 WILD-TYPE" "OR4C15 WILD-TYPE" "OR4C15 WILD-TYPE" 
      TCGA-05-4418       TCGA-05-4420       TCGA-05-4424       TCGA-05-4426 
"OR4C15 WILD-TYPE"   "OR4C15 MUTATED" "OR4C15 WILD-TYPE" "OR4C15 WILD-TYPE" 
      TCGA-05-4427       TCGA-05-4430       TCGA-05-4432       TCGA-05-4433 
"OR4C15 WILD-TYPE"   "OR4C15 MUTATED" "OR4C15 WILD-TYPE" "OR4C15 WILD-TYPE" 
      TCGA-05-4434       TCGA-05-5420       TCGA-05-5423       TCGA-05-5425 
"OR4C15 WILD-TYPE" "OR4C15 WILD-TYPE" "OR4C15 WILD-TYPE" "OR4C15 WILD-TYPE" 
      TCGA-05-5429       TCGA-05-5715       TCGA-35-3615       TCGA-35-4122 
"OR4C15 WILD-TYPE" "OR4C15 WILD-TYPE" "OR4C15 WILD-TYPE" "OR4C15 WILD-TYPE" 
      TCGA-35-4123       TCGA-35-5375       TCGA-38-4625       TCGA-38-4626 
"OR4C15 WILD-TYPE"   "OR4C15 MUTATED" "OR4C15 WILD-TYPE" "OR4C15 WILD-TYPE" 
      TCGA-38-4627       TCGA-38-4628       TCGA-38-4629       TCGA-38-4630 
"OR4C15 WILD-TYPE" "OR4C15 WILD-TYPE" "OR4C15 WILD-TYPE" "OR4C15 WILD-TYPE" 
      TCGA-38-4631       TCGA-38-4632       TCGA-38-6178       TCGA-44-2655 
"OR4C15 WILD-TYPE" "OR4C15 WILD-TYPE" "OR4C15 WILD-TYPE" "OR4C15 WILD-TYPE" 
      TCGA-44-2656       TCGA-44-2657       TCGA-44-2659       TCGA-44-2661 
"OR4C15 WILD-TYPE" "OR4C15 WILD-TYPE" "OR4C15 WILD-TYPE" "OR4C15 WILD-TYPE" 
      TCGA-44-2662       TCGA-44-2665       TCGA-44-2666       TCGA-44-2668 
"OR4C15 WILD-TYPE" "OR4C15 WILD-TYPE" "OR4C15 WILD-TYPE" "OR4C15 WILD-TYPE" 
      TCGA-44-3396       TCGA-44-3398       TCGA-44-3918       TCGA-44-3919 
"OR4C15 WILD-TYPE"   "OR4C15 MUTATED" "OR4C15 WILD-TYPE" "OR4C15 WILD-TYPE" 
      TCGA-44-4112       TCGA-44-5643       TCGA-44-5645       TCGA-44-6144 
"OR4C15 WILD-TYPE" "OR4C15 WILD-TYPE" "OR4C15 WILD-TYPE" "OR4C15 WILD-TYPE" 
      TCGA-44-6145       TCGA-44-6146       TCGA-44-6147       TCGA-44-6148 
"OR4C15 WILD-TYPE" "OR4C15 WILD-TYPE" "OR4C15 WILD-TYPE" "OR4C15 WILD-TYPE" 
      TCGA-44-6774       TCGA-44-6775       TCGA-44-6776       TCGA-44-6777 
"OR4C15 WILD-TYPE" "OR4C15 WILD-TYPE" "OR4C15 WILD-TYPE" "OR4C15 WILD-TYPE" 
      TCGA-44-6778       TCGA-44-6779       TCGA-49-4486       TCGA-49-4487 
"OR4C15 WILD-TYPE" "OR4C15 WILD-TYPE" "OR4C15 WILD-TYPE" "OR4C15 WILD-TYPE" 
      TCGA-49-4488       TCGA-49-4490       TCGA-49-4494       TCGA-49-4501 
"OR4C15 WILD-TYPE" "OR4C15 WILD-TYPE" "OR4C15 WILD-TYPE" "OR4C15 WILD-TYPE" 
      TCGA-49-4505       TCGA-49-4506       TCGA-49-4507       TCGA-49-4510 
"OR4C15 WILD-TYPE" "OR4C15 WILD-TYPE" "OR4C15 WILD-TYPE" "OR4C15 WILD-TYPE" 
      TCGA-49-4512       TCGA-49-4514       TCGA-49-6742       TCGA-49-6743 
"OR4C15 WILD-TYPE" "OR4C15 WILD-TYPE" "OR4C15 WILD-TYPE"   "OR4C15 MUTATED" 
      TCGA-49-6744       TCGA-49-6745       TCGA-50-5044       TCGA-50-5045 
"OR4C15 WILD-TYPE" "OR4C15 WILD-TYPE" "OR4C15 WILD-TYPE" "OR4C15 WILD-TYPE" 
      TCGA-50-5049       TCGA-50-5051       TCGA-50-5055       TCGA-50-5066 
"OR4C15 WILD-TYPE" "OR4C15 WILD-TYPE" "OR4C15 WILD-TYPE"   "OR4C15 MUTATED" 
      TCGA-50-5068       TCGA-50-5072       TCGA-50-5930       TCGA-50-5931 
"OR4C15 WILD-TYPE" "OR4C15 WILD-TYPE" "OR4C15 WILD-TYPE" "OR4C15 WILD-TYPE" 
      TCGA-50-5932       TCGA-50-5933       TCGA-50-5935       TCGA-50-5936 
"OR4C15 WILD-TYPE" "OR4C15 WILD-TYPE" "OR4C15 WILD-TYPE" "OR4C15 WILD-TYPE" 
      TCGA-50-5939       TCGA-50-5941       TCGA-50-5942       TCGA-50-5944 
"OR4C15 WILD-TYPE"   "OR4C15 MUTATED" "OR4C15 WILD-TYPE" "OR4C15 WILD-TYPE" 
      TCGA-50-5946       TCGA-50-6590       TCGA-50-6591       TCGA-50-6592 
"OR4C15 WILD-TYPE" "OR4C15 WILD-TYPE" "OR4C15 WILD-TYPE" "OR4C15 WILD-TYPE" 
      TCGA-50-6593       TCGA-50-6594       TCGA-50-6595       TCGA-50-6597 
"OR4C15 WILD-TYPE" "OR4C15 WILD-TYPE" "OR4C15 WILD-TYPE" "OR4C15 WILD-TYPE" 
      TCGA-55-1592       TCGA-55-1594       TCGA-55-1595       TCGA-55-1596 
"OR4C15 WILD-TYPE" "OR4C15 WILD-TYPE" "OR4C15 WILD-TYPE" "OR4C15 WILD-TYPE" 
      TCGA-55-5899       TCGA-55-6543       TCGA-55-6642       TCGA-55-6712 
"OR4C15 WILD-TYPE" "OR4C15 WILD-TYPE" "OR4C15 WILD-TYPE"   "OR4C15 MUTATED" 
      TCGA-64-1676       TCGA-64-1677       TCGA-64-1678       TCGA-64-1680 
"OR4C15 WILD-TYPE" "OR4C15 WILD-TYPE" "OR4C15 WILD-TYPE" "OR4C15 WILD-TYPE" 
      TCGA-64-5774       TCGA-64-5775       TCGA-64-5778       TCGA-64-5779 
"OR4C15 WILD-TYPE" "OR4C15 WILD-TYPE" "OR4C15 WILD-TYPE" "OR4C15 WILD-TYPE" 
      TCGA-64-5781       TCGA-64-5815       TCGA-67-3770       TCGA-67-3771 
"OR4C15 WILD-TYPE" "OR4C15 WILD-TYPE" "OR4C15 WILD-TYPE" "OR4C15 WILD-TYPE" 
      TCGA-67-3772       TCGA-67-3773       TCGA-67-3774       TCGA-67-6215 
"OR4C15 WILD-TYPE" "OR4C15 WILD-TYPE" "OR4C15 WILD-TYPE" "OR4C15 WILD-TYPE" 
      TCGA-67-6216       TCGA-67-6217       TCGA-71-6725       TCGA-73-4658 
"OR4C15 WILD-TYPE" "OR4C15 WILD-TYPE" "OR4C15 WILD-TYPE" "OR4C15 WILD-TYPE" 
      TCGA-73-4659       TCGA-73-4662       TCGA-73-4666       TCGA-73-4668 
"OR4C15 WILD-TYPE" "OR4C15 WILD-TYPE" "OR4C15 WILD-TYPE"   "OR4C15 MUTATED" 
      TCGA-73-4670       TCGA-73-4675       TCGA-73-4676       TCGA-73-4677 
"OR4C15 WILD-TYPE" "OR4C15 WILD-TYPE" "OR4C15 WILD-TYPE" "OR4C15 WILD-TYPE" 
      TCGA-91-6828       TCGA-91-6829       TCGA-91-6831       TCGA-91-6835 
"OR4C15 WILD-TYPE"   "OR4C15 MUTATED" "OR4C15 WILD-TYPE" "OR4C15 WILD-TYPE" 
      TCGA-91-6836 
"OR4C15 WILD-TYPE" 
[1] "hr=" "1.8"
D37V2, continuous
D37V3, binary
[1] "tbl2"
                  cls
clus               [,1] [,2]
  OR4C15 MUTATED      6    7
  OR4C15 WILD-TYPE   87   72
        clus
vv       OR4C15 MUTATED OR4C15 WILD-TYPE
  FEMALE              6               87
  MALE                7               72
D37V4, continuous
[1] "Remove cluster labels:" "OR4C15 MUTATED"        
clus
  OR4C15 MUTATED OR4C15 WILD-TYPE 
               2               10 
      TCGA-35-4122       TCGA-35-4123       TCGA-64-1677       TCGA-64-5778 
"OR4C15 WILD-TYPE" "OR4C15 WILD-TYPE" "OR4C15 WILD-TYPE" "OR4C15 WILD-TYPE" 
      TCGA-71-6725       TCGA-73-4659       TCGA-73-4662       TCGA-73-4666 
"OR4C15 WILD-TYPE" "OR4C15 WILD-TYPE" "OR4C15 WILD-TYPE" "OR4C15 WILD-TYPE" 
      TCGA-73-4676       TCGA-75-5122 
"OR4C15 WILD-TYPE" "OR4C15 WILD-TYPE" 
D37V5, multiclass
D37V6, multiclass
    clus
vv   OR4C15 MUTATED OR4C15 WILD-TYPE
  T1              3               38
  T2              8              100
  T3              0               14
  T4              2                6
D37V7, multiclass
       clus
vv      OR4C15 MUTATED OR4C15 WILD-TYPE
  N0                 5               90
  N1                 4               33
  N2+N3              4               31
D37V8, multiclass
    clus
vv   OR4C15 MUTATED OR4C15 WILD-TYPE
  M0             10              127
  M1              0                9
  MX              3               19
D37V9, multiclass
     clus
vv    OR4C15 MUTATED OR4C15 WILD-TYPE
  I                5               83
  II               2               31
  III              5               34
  IV               0                9
D37V10, binary
[1] "tbl2"
                  cls
clus               [,1] [,2]
  OR4C15 MUTATED      0   13
  OR4C15 WILD-TYPE   16  143
     clus
vv    OR4C15 MUTATED OR4C15 WILD-TYPE
  NO               0               16
  YES             13              143
D37V11, continuous
D37V12, continuous
D37V13, multiclass
                                             clus
vv                                            OR4C15 MUTATED OR4C15 WILD-TYPE
  CURRENT REFORMED SMOKER FOR < OR = 15 YEARS              7               55
  CURRENT REFORMED SMOKER FOR > 15 YEARS                   2               44
  CURRENT SMOKER                                           3               25
  LIFELONG NON-SMOKER                                      1               23
D37V14, continuous

Clustering(38) Variable = LRRTM4 MUTATION ANALYSIS
D38V1, survival
                  sevent
clus2               0  1
  LRRTM4 MUTATED   11  5
  LRRTM4 WILD-TYPE 88 45
  LRRTM4 MUTATED LRRTM4 WILD-TYPE 
              16              133 
  LRRTM4 MUTATED LRRTM4 WILD-TYPE 
               5               45 
$`LRRTM4 MUTATED`
TCGA-05-4249 TCGA-05-4382 TCGA-05-4432 TCGA-05-4434 TCGA-38-4631 TCGA-44-2659 
       38.07        19.92        25.02        15.02        11.64        17.39 
TCGA-44-6144 TCGA-44-6778 TCGA-49-4494 TCGA-49-6743 TCGA-55-1592 TCGA-64-1676 
        0.30        36.49        35.54        12.13        23.05        56.81 
TCGA-64-5774 TCGA-64-5779 TCGA-64-5781 TCGA-73-4677 
       83.84        16.67        39.52         1.25 

$`LRRTM4 WILD-TYPE`
TCGA-05-4250 TCGA-05-4384 TCGA-05-4390 TCGA-05-4396 TCGA-05-4397 TCGA-05-4398 
        3.98        14.01        37.02         9.96        24.03        47.05 
TCGA-05-4402 TCGA-05-4405 TCGA-05-4415 TCGA-05-4417 TCGA-05-4418 TCGA-05-4420 
        8.02        20.05         2.96        14.93         8.98        29.95 
TCGA-05-4424 TCGA-05-4426 TCGA-05-4427 TCGA-05-4430 TCGA-05-4433 TCGA-05-5420 
       30.02        26.01        26.01        25.02        24.00         1.02 
TCGA-05-5423 TCGA-05-5425 TCGA-05-5429 TCGA-05-5715 TCGA-35-3615 TCGA-35-4122 
        4.96         2.96         0.99         2.04         0.46         7.36 
TCGA-35-4123 TCGA-35-5375 TCGA-38-4625 TCGA-38-4626 TCGA-38-4627 TCGA-38-4628 
        5.95         8.68        47.61        85.32        37.71        49.02 
TCGA-38-4629 TCGA-38-4630 TCGA-38-4632 TCGA-38-6178 TCGA-44-2655 TCGA-44-2656 
       28.37        35.28        44.61         5.19        18.87        19.10 
TCGA-44-2657 TCGA-44-2661 TCGA-44-2662 TCGA-44-2665 TCGA-44-2666 TCGA-44-2668 
       13.15         3.39        15.78        13.15         3.19         8.09 
TCGA-44-3396 TCGA-44-3398 TCGA-44-3918 TCGA-44-3919 TCGA-44-4112 TCGA-44-5643 
       10.22         8.32         6.44         6.21         4.60         3.48 
TCGA-44-5645 TCGA-44-6145 TCGA-44-6146 TCGA-44-6147 TCGA-44-6148 TCGA-44-6774 
        6.84         3.35         9.93         7.76         3.12         5.42 
TCGA-44-6775 TCGA-44-6776 TCGA-44-6777 TCGA-44-6779 TCGA-49-4486 TCGA-49-4487 
        2.70        63.72        32.45        16.41        76.21        28.11 
TCGA-49-4488 TCGA-49-4490 TCGA-49-4501 TCGA-49-4505 TCGA-49-4506 TCGA-49-4507 
       28.57        12.66        46.72        14.07        32.84         8.81 
TCGA-49-4510 TCGA-49-4512 TCGA-49-4514 TCGA-49-6742 TCGA-49-6744 TCGA-49-6745 
       29.46        29.75        43.20        15.02        12.99         4.93 
TCGA-50-5044 TCGA-50-5045 TCGA-50-5049 TCGA-50-5051 TCGA-50-5055 TCGA-50-5066 
       20.48        71.47        48.82        14.96        25.81         9.76 
TCGA-50-5068 TCGA-50-5072 TCGA-50-5930 TCGA-50-5931 TCGA-50-5932 TCGA-50-5933 
       49.28         8.05         9.27         8.78        35.87        77.88 
TCGA-50-5935 TCGA-50-5936 TCGA-50-5939 TCGA-50-5941 TCGA-50-5942 TCGA-50-5944 
       21.47         8.45        15.12         9.37         4.44        12.26 
TCGA-50-5946 TCGA-50-6590 TCGA-50-6591 TCGA-50-6592 TCGA-50-6593 TCGA-50-6594 
       11.47        42.31         3.88        25.51        11.05        12.16 
TCGA-50-6595 TCGA-50-6597 TCGA-55-1594 TCGA-55-1595 TCGA-55-1596 TCGA-55-5899 
        6.21        33.37        38.73        48.62        45.17         2.86 
TCGA-55-6543 TCGA-55-6642 TCGA-55-6712 TCGA-64-1677 TCGA-64-1678 TCGA-64-1680 
        0.07        32.61         0.79        20.65        39.09        37.02 
TCGA-64-5775 TCGA-64-5778 TCGA-64-5815 TCGA-67-3770 TCGA-67-3771 TCGA-67-3772 
        0.10        30.44         7.33         0.99         1.97         0.59 
TCGA-67-3773 TCGA-67-3774 TCGA-67-6215 TCGA-67-6216 TCGA-67-6217 TCGA-71-6725 
        2.04         0.59         0.89         0.69        13.87         2.01 
TCGA-73-4658 TCGA-73-4659 TCGA-73-4662 TCGA-73-4666 TCGA-73-4668 TCGA-73-4670 
       52.57        23.38        29.95        20.28        15.35         0.46 
TCGA-73-4675 TCGA-73-4676 TCGA-91-6828 TCGA-91-6829 TCGA-91-6831 TCGA-91-6835 
        1.32         4.01         1.22        41.33         1.28         1.15 
TCGA-91-6836 
        0.36 

  LRRTM4 MUTATED LRRTM4 WILD-TYPE 
            0.30             0.07 
  LRRTM4 MUTATED LRRTM4 WILD-TYPE 
           83.84            85.32 
  LRRTM4 MUTATED LRRTM4 WILD-TYPE 
          21.485           12.660 
[1] "0.3 - 83.8 (21.5)" "0.1 - 85.3 (12.7)"
      TCGA-05-4249       TCGA-05-4250       TCGA-05-4382       TCGA-05-4384 
  "LRRTM4 MUTATED" "LRRTM4 WILD-TYPE"   "LRRTM4 MUTATED" "LRRTM4 WILD-TYPE" 
      TCGA-05-4390       TCGA-05-4396       TCGA-05-4397       TCGA-05-4398 
"LRRTM4 WILD-TYPE" "LRRTM4 WILD-TYPE" "LRRTM4 WILD-TYPE" "LRRTM4 WILD-TYPE" 
      TCGA-05-4402       TCGA-05-4405       TCGA-05-4415       TCGA-05-4417 
"LRRTM4 WILD-TYPE" "LRRTM4 WILD-TYPE" "LRRTM4 WILD-TYPE" "LRRTM4 WILD-TYPE" 
      TCGA-05-4418       TCGA-05-4420       TCGA-05-4424       TCGA-05-4426 
"LRRTM4 WILD-TYPE" "LRRTM4 WILD-TYPE" "LRRTM4 WILD-TYPE" "LRRTM4 WILD-TYPE" 
      TCGA-05-4427       TCGA-05-4430       TCGA-05-4432       TCGA-05-4433 
"LRRTM4 WILD-TYPE" "LRRTM4 WILD-TYPE"   "LRRTM4 MUTATED" "LRRTM4 WILD-TYPE" 
      TCGA-05-4434       TCGA-05-5420       TCGA-05-5423       TCGA-05-5425 
  "LRRTM4 MUTATED" "LRRTM4 WILD-TYPE" "LRRTM4 WILD-TYPE" "LRRTM4 WILD-TYPE" 
      TCGA-05-5429       TCGA-05-5715       TCGA-35-3615       TCGA-35-4122 
"LRRTM4 WILD-TYPE" "LRRTM4 WILD-TYPE" "LRRTM4 WILD-TYPE" "LRRTM4 WILD-TYPE" 
      TCGA-35-4123       TCGA-35-5375       TCGA-38-4625       TCGA-38-4626 
"LRRTM4 WILD-TYPE" "LRRTM4 WILD-TYPE" "LRRTM4 WILD-TYPE" "LRRTM4 WILD-TYPE" 
      TCGA-38-4627       TCGA-38-4628       TCGA-38-4629       TCGA-38-4630 
"LRRTM4 WILD-TYPE" "LRRTM4 WILD-TYPE" "LRRTM4 WILD-TYPE" "LRRTM4 WILD-TYPE" 
      TCGA-38-4631       TCGA-38-4632       TCGA-38-6178       TCGA-44-2655 
  "LRRTM4 MUTATED" "LRRTM4 WILD-TYPE" "LRRTM4 WILD-TYPE" "LRRTM4 WILD-TYPE" 
      TCGA-44-2656       TCGA-44-2657       TCGA-44-2659       TCGA-44-2661 
"LRRTM4 WILD-TYPE" "LRRTM4 WILD-TYPE"   "LRRTM4 MUTATED" "LRRTM4 WILD-TYPE" 
      TCGA-44-2662       TCGA-44-2665       TCGA-44-2666       TCGA-44-2668 
"LRRTM4 WILD-TYPE" "LRRTM4 WILD-TYPE" "LRRTM4 WILD-TYPE" "LRRTM4 WILD-TYPE" 
      TCGA-44-3396       TCGA-44-3398       TCGA-44-3918       TCGA-44-3919 
"LRRTM4 WILD-TYPE" "LRRTM4 WILD-TYPE" "LRRTM4 WILD-TYPE" "LRRTM4 WILD-TYPE" 
      TCGA-44-4112       TCGA-44-5643       TCGA-44-5645       TCGA-44-6144 
"LRRTM4 WILD-TYPE" "LRRTM4 WILD-TYPE" "LRRTM4 WILD-TYPE"   "LRRTM4 MUTATED" 
      TCGA-44-6145       TCGA-44-6146       TCGA-44-6147       TCGA-44-6148 
"LRRTM4 WILD-TYPE" "LRRTM4 WILD-TYPE" "LRRTM4 WILD-TYPE" "LRRTM4 WILD-TYPE" 
      TCGA-44-6774       TCGA-44-6775       TCGA-44-6776       TCGA-44-6777 
"LRRTM4 WILD-TYPE" "LRRTM4 WILD-TYPE" "LRRTM4 WILD-TYPE" "LRRTM4 WILD-TYPE" 
      TCGA-44-6778       TCGA-44-6779       TCGA-49-4486       TCGA-49-4487 
  "LRRTM4 MUTATED" "LRRTM4 WILD-TYPE" "LRRTM4 WILD-TYPE" "LRRTM4 WILD-TYPE" 
      TCGA-49-4488       TCGA-49-4490       TCGA-49-4494       TCGA-49-4501 
"LRRTM4 WILD-TYPE" "LRRTM4 WILD-TYPE"   "LRRTM4 MUTATED" "LRRTM4 WILD-TYPE" 
      TCGA-49-4505       TCGA-49-4506       TCGA-49-4507       TCGA-49-4510 
"LRRTM4 WILD-TYPE" "LRRTM4 WILD-TYPE" "LRRTM4 WILD-TYPE" "LRRTM4 WILD-TYPE" 
      TCGA-49-4512       TCGA-49-4514       TCGA-49-6742       TCGA-49-6743 
"LRRTM4 WILD-TYPE" "LRRTM4 WILD-TYPE" "LRRTM4 WILD-TYPE"   "LRRTM4 MUTATED" 
      TCGA-49-6744       TCGA-49-6745       TCGA-50-5044       TCGA-50-5045 
"LRRTM4 WILD-TYPE" "LRRTM4 WILD-TYPE" "LRRTM4 WILD-TYPE" "LRRTM4 WILD-TYPE" 
      TCGA-50-5049       TCGA-50-5051       TCGA-50-5055       TCGA-50-5066 
"LRRTM4 WILD-TYPE" "LRRTM4 WILD-TYPE" "LRRTM4 WILD-TYPE" "LRRTM4 WILD-TYPE" 
      TCGA-50-5068       TCGA-50-5072       TCGA-50-5930       TCGA-50-5931 
"LRRTM4 WILD-TYPE" "LRRTM4 WILD-TYPE" "LRRTM4 WILD-TYPE" "LRRTM4 WILD-TYPE" 
      TCGA-50-5932       TCGA-50-5933       TCGA-50-5935       TCGA-50-5936 
"LRRTM4 WILD-TYPE" "LRRTM4 WILD-TYPE" "LRRTM4 WILD-TYPE" "LRRTM4 WILD-TYPE" 
      TCGA-50-5939       TCGA-50-5941       TCGA-50-5942       TCGA-50-5944 
"LRRTM4 WILD-TYPE" "LRRTM4 WILD-TYPE" "LRRTM4 WILD-TYPE" "LRRTM4 WILD-TYPE" 
      TCGA-50-5946       TCGA-50-6590       TCGA-50-6591       TCGA-50-6592 
"LRRTM4 WILD-TYPE" "LRRTM4 WILD-TYPE" "LRRTM4 WILD-TYPE" "LRRTM4 WILD-TYPE" 
      TCGA-50-6593       TCGA-50-6594       TCGA-50-6595       TCGA-50-6597 
"LRRTM4 WILD-TYPE" "LRRTM4 WILD-TYPE" "LRRTM4 WILD-TYPE" "LRRTM4 WILD-TYPE" 
      TCGA-55-1592       TCGA-55-1594       TCGA-55-1595       TCGA-55-1596 
  "LRRTM4 MUTATED" "LRRTM4 WILD-TYPE" "LRRTM4 WILD-TYPE" "LRRTM4 WILD-TYPE" 
      TCGA-55-5899       TCGA-55-6543       TCGA-55-6642       TCGA-55-6712 
"LRRTM4 WILD-TYPE" "LRRTM4 WILD-TYPE" "LRRTM4 WILD-TYPE" "LRRTM4 WILD-TYPE" 
      TCGA-64-1676       TCGA-64-1677       TCGA-64-1678       TCGA-64-1680 
  "LRRTM4 MUTATED" "LRRTM4 WILD-TYPE" "LRRTM4 WILD-TYPE" "LRRTM4 WILD-TYPE" 
      TCGA-64-5774       TCGA-64-5775       TCGA-64-5778       TCGA-64-5779 
  "LRRTM4 MUTATED" "LRRTM4 WILD-TYPE" "LRRTM4 WILD-TYPE"   "LRRTM4 MUTATED" 
      TCGA-64-5781       TCGA-64-5815       TCGA-67-3770       TCGA-67-3771 
  "LRRTM4 MUTATED" "LRRTM4 WILD-TYPE" "LRRTM4 WILD-TYPE" "LRRTM4 WILD-TYPE" 
      TCGA-67-3772       TCGA-67-3773       TCGA-67-3774       TCGA-67-6215 
"LRRTM4 WILD-TYPE" "LRRTM4 WILD-TYPE" "LRRTM4 WILD-TYPE" "LRRTM4 WILD-TYPE" 
      TCGA-67-6216       TCGA-67-6217       TCGA-71-6725       TCGA-73-4658 
"LRRTM4 WILD-TYPE" "LRRTM4 WILD-TYPE" "LRRTM4 WILD-TYPE" "LRRTM4 WILD-TYPE" 
      TCGA-73-4659       TCGA-73-4662       TCGA-73-4666       TCGA-73-4668 
"LRRTM4 WILD-TYPE" "LRRTM4 WILD-TYPE" "LRRTM4 WILD-TYPE" "LRRTM4 WILD-TYPE" 
      TCGA-73-4670       TCGA-73-4675       TCGA-73-4676       TCGA-73-4677 
"LRRTM4 WILD-TYPE" "LRRTM4 WILD-TYPE" "LRRTM4 WILD-TYPE"   "LRRTM4 MUTATED" 
      TCGA-91-6828       TCGA-91-6829       TCGA-91-6831       TCGA-91-6835 
"LRRTM4 WILD-TYPE" "LRRTM4 WILD-TYPE" "LRRTM4 WILD-TYPE" "LRRTM4 WILD-TYPE" 
      TCGA-91-6836 
"LRRTM4 WILD-TYPE" 
      TCGA-05-4249       TCGA-05-4250       TCGA-05-4382       TCGA-05-4384 
  "LRRTM4 MUTATED" "LRRTM4 WILD-TYPE"   "LRRTM4 MUTATED" "LRRTM4 WILD-TYPE" 
      TCGA-05-4390       TCGA-05-4396       TCGA-05-4397       TCGA-05-4398 
"LRRTM4 WILD-TYPE" "LRRTM4 WILD-TYPE" "LRRTM4 WILD-TYPE" "LRRTM4 WILD-TYPE" 
      TCGA-05-4402       TCGA-05-4405       TCGA-05-4415       TCGA-05-4417 
"LRRTM4 WILD-TYPE" "LRRTM4 WILD-TYPE" "LRRTM4 WILD-TYPE" "LRRTM4 WILD-TYPE" 
      TCGA-05-4418       TCGA-05-4420       TCGA-05-4424       TCGA-05-4426 
"LRRTM4 WILD-TYPE" "LRRTM4 WILD-TYPE" "LRRTM4 WILD-TYPE" "LRRTM4 WILD-TYPE" 
      TCGA-05-4427       TCGA-05-4430       TCGA-05-4432       TCGA-05-4433 
"LRRTM4 WILD-TYPE" "LRRTM4 WILD-TYPE"   "LRRTM4 MUTATED" "LRRTM4 WILD-TYPE" 
      TCGA-05-4434       TCGA-05-5420       TCGA-05-5423       TCGA-05-5425 
  "LRRTM4 MUTATED" "LRRTM4 WILD-TYPE" "LRRTM4 WILD-TYPE" "LRRTM4 WILD-TYPE" 
      TCGA-05-5429       TCGA-05-5715       TCGA-35-3615       TCGA-35-4122 
"LRRTM4 WILD-TYPE" "LRRTM4 WILD-TYPE" "LRRTM4 WILD-TYPE" "LRRTM4 WILD-TYPE" 
      TCGA-35-4123       TCGA-35-5375       TCGA-38-4625       TCGA-38-4626 
"LRRTM4 WILD-TYPE" "LRRTM4 WILD-TYPE" "LRRTM4 WILD-TYPE" "LRRTM4 WILD-TYPE" 
      TCGA-38-4627       TCGA-38-4628       TCGA-38-4629       TCGA-38-4630 
"LRRTM4 WILD-TYPE" "LRRTM4 WILD-TYPE" "LRRTM4 WILD-TYPE" "LRRTM4 WILD-TYPE" 
      TCGA-38-4631       TCGA-38-4632       TCGA-38-6178       TCGA-44-2655 
  "LRRTM4 MUTATED" "LRRTM4 WILD-TYPE" "LRRTM4 WILD-TYPE" "LRRTM4 WILD-TYPE" 
      TCGA-44-2656       TCGA-44-2657       TCGA-44-2659       TCGA-44-2661 
"LRRTM4 WILD-TYPE" "LRRTM4 WILD-TYPE"   "LRRTM4 MUTATED" "LRRTM4 WILD-TYPE" 
      TCGA-44-2662       TCGA-44-2665       TCGA-44-2666       TCGA-44-2668 
"LRRTM4 WILD-TYPE" "LRRTM4 WILD-TYPE" "LRRTM4 WILD-TYPE" "LRRTM4 WILD-TYPE" 
      TCGA-44-3396       TCGA-44-3398       TCGA-44-3918       TCGA-44-3919 
"LRRTM4 WILD-TYPE" "LRRTM4 WILD-TYPE" "LRRTM4 WILD-TYPE" "LRRTM4 WILD-TYPE" 
      TCGA-44-4112       TCGA-44-5643       TCGA-44-5645       TCGA-44-6144 
"LRRTM4 WILD-TYPE" "LRRTM4 WILD-TYPE" "LRRTM4 WILD-TYPE"   "LRRTM4 MUTATED" 
      TCGA-44-6145       TCGA-44-6146       TCGA-44-6147       TCGA-44-6148 
"LRRTM4 WILD-TYPE" "LRRTM4 WILD-TYPE" "LRRTM4 WILD-TYPE" "LRRTM4 WILD-TYPE" 
      TCGA-44-6774       TCGA-44-6775       TCGA-44-6776       TCGA-44-6777 
"LRRTM4 WILD-TYPE" "LRRTM4 WILD-TYPE" "LRRTM4 WILD-TYPE" "LRRTM4 WILD-TYPE" 
      TCGA-44-6778       TCGA-44-6779       TCGA-49-4486       TCGA-49-4487 
  "LRRTM4 MUTATED" "LRRTM4 WILD-TYPE" "LRRTM4 WILD-TYPE" "LRRTM4 WILD-TYPE" 
      TCGA-49-4488       TCGA-49-4490       TCGA-49-4494       TCGA-49-4501 
"LRRTM4 WILD-TYPE" "LRRTM4 WILD-TYPE"   "LRRTM4 MUTATED" "LRRTM4 WILD-TYPE" 
      TCGA-49-4505       TCGA-49-4506       TCGA-49-4507       TCGA-49-4510 
"LRRTM4 WILD-TYPE" "LRRTM4 WILD-TYPE" "LRRTM4 WILD-TYPE" "LRRTM4 WILD-TYPE" 
      TCGA-49-4512       TCGA-49-4514       TCGA-49-6742       TCGA-49-6743 
"LRRTM4 WILD-TYPE" "LRRTM4 WILD-TYPE" "LRRTM4 WILD-TYPE"   "LRRTM4 MUTATED" 
      TCGA-49-6744       TCGA-49-6745       TCGA-50-5044       TCGA-50-5045 
"LRRTM4 WILD-TYPE" "LRRTM4 WILD-TYPE" "LRRTM4 WILD-TYPE" "LRRTM4 WILD-TYPE" 
      TCGA-50-5049       TCGA-50-5051       TCGA-50-5055       TCGA-50-5066 
"LRRTM4 WILD-TYPE" "LRRTM4 WILD-TYPE" "LRRTM4 WILD-TYPE" "LRRTM4 WILD-TYPE" 
      TCGA-50-5068       TCGA-50-5072       TCGA-50-5930       TCGA-50-5931 
"LRRTM4 WILD-TYPE" "LRRTM4 WILD-TYPE" "LRRTM4 WILD-TYPE" "LRRTM4 WILD-TYPE" 
      TCGA-50-5932       TCGA-50-5933       TCGA-50-5935       TCGA-50-5936 
"LRRTM4 WILD-TYPE" "LRRTM4 WILD-TYPE" "LRRTM4 WILD-TYPE" "LRRTM4 WILD-TYPE" 
      TCGA-50-5939       TCGA-50-5941       TCGA-50-5942       TCGA-50-5944 
"LRRTM4 WILD-TYPE" "LRRTM4 WILD-TYPE" "LRRTM4 WILD-TYPE" "LRRTM4 WILD-TYPE" 
      TCGA-50-5946       TCGA-50-6590       TCGA-50-6591       TCGA-50-6592 
"LRRTM4 WILD-TYPE" "LRRTM4 WILD-TYPE" "LRRTM4 WILD-TYPE" "LRRTM4 WILD-TYPE" 
      TCGA-50-6593       TCGA-50-6594       TCGA-50-6595       TCGA-50-6597 
"LRRTM4 WILD-TYPE" "LRRTM4 WILD-TYPE" "LRRTM4 WILD-TYPE" "LRRTM4 WILD-TYPE" 
      TCGA-55-1592       TCGA-55-1594       TCGA-55-1595       TCGA-55-1596 
  "LRRTM4 MUTATED" "LRRTM4 WILD-TYPE" "LRRTM4 WILD-TYPE" "LRRTM4 WILD-TYPE" 
      TCGA-55-5899       TCGA-55-6543       TCGA-55-6642       TCGA-55-6712 
"LRRTM4 WILD-TYPE" "LRRTM4 WILD-TYPE" "LRRTM4 WILD-TYPE" "LRRTM4 WILD-TYPE" 
      TCGA-64-1676       TCGA-64-1677       TCGA-64-1678       TCGA-64-1680 
  "LRRTM4 MUTATED" "LRRTM4 WILD-TYPE" "LRRTM4 WILD-TYPE" "LRRTM4 WILD-TYPE" 
      TCGA-64-5774       TCGA-64-5775       TCGA-64-5778       TCGA-64-5779 
  "LRRTM4 MUTATED" "LRRTM4 WILD-TYPE" "LRRTM4 WILD-TYPE"   "LRRTM4 MUTATED" 
      TCGA-64-5781       TCGA-64-5815       TCGA-67-3770       TCGA-67-3771 
  "LRRTM4 MUTATED" "LRRTM4 WILD-TYPE" "LRRTM4 WILD-TYPE" "LRRTM4 WILD-TYPE" 
      TCGA-67-3772       TCGA-67-3773       TCGA-67-3774       TCGA-67-6215 
"LRRTM4 WILD-TYPE" "LRRTM4 WILD-TYPE" "LRRTM4 WILD-TYPE" "LRRTM4 WILD-TYPE" 
      TCGA-67-6216       TCGA-67-6217       TCGA-71-6725       TCGA-73-4658 
"LRRTM4 WILD-TYPE" "LRRTM4 WILD-TYPE" "LRRTM4 WILD-TYPE" "LRRTM4 WILD-TYPE" 
      TCGA-73-4659       TCGA-73-4662       TCGA-73-4666       TCGA-73-4668 
"LRRTM4 WILD-TYPE" "LRRTM4 WILD-TYPE" "LRRTM4 WILD-TYPE" "LRRTM4 WILD-TYPE" 
      TCGA-73-4670       TCGA-73-4675       TCGA-73-4676       TCGA-73-4677 
"LRRTM4 WILD-TYPE" "LRRTM4 WILD-TYPE" "LRRTM4 WILD-TYPE"   "LRRTM4 MUTATED" 
      TCGA-91-6828       TCGA-91-6829       TCGA-91-6831       TCGA-91-6835 
"LRRTM4 WILD-TYPE" "LRRTM4 WILD-TYPE" "LRRTM4 WILD-TYPE" "LRRTM4 WILD-TYPE" 
      TCGA-91-6836 
"LRRTM4 WILD-TYPE" 
      TCGA-05-4249       TCGA-05-4250       TCGA-05-4382       TCGA-05-4384 
  "LRRTM4 MUTATED" "LRRTM4 WILD-TYPE"   "LRRTM4 MUTATED" "LRRTM4 WILD-TYPE" 
      TCGA-05-4390       TCGA-05-4396       TCGA-05-4397       TCGA-05-4398 
"LRRTM4 WILD-TYPE" "LRRTM4 WILD-TYPE" "LRRTM4 WILD-TYPE" "LRRTM4 WILD-TYPE" 
      TCGA-05-4402       TCGA-05-4405       TCGA-05-4415       TCGA-05-4417 
"LRRTM4 WILD-TYPE" "LRRTM4 WILD-TYPE" "LRRTM4 WILD-TYPE" "LRRTM4 WILD-TYPE" 
      TCGA-05-4418       TCGA-05-4420       TCGA-05-4424       TCGA-05-4426 
"LRRTM4 WILD-TYPE" "LRRTM4 WILD-TYPE" "LRRTM4 WILD-TYPE" "LRRTM4 WILD-TYPE" 
      TCGA-05-4427       TCGA-05-4430       TCGA-05-4432       TCGA-05-4433 
"LRRTM4 WILD-TYPE" "LRRTM4 WILD-TYPE"   "LRRTM4 MUTATED" "LRRTM4 WILD-TYPE" 
      TCGA-05-4434       TCGA-05-5420       TCGA-05-5423       TCGA-05-5425 
  "LRRTM4 MUTATED" "LRRTM4 WILD-TYPE" "LRRTM4 WILD-TYPE" "LRRTM4 WILD-TYPE" 
      TCGA-05-5429       TCGA-05-5715       TCGA-35-3615       TCGA-35-4122 
"LRRTM4 WILD-TYPE" "LRRTM4 WILD-TYPE" "LRRTM4 WILD-TYPE" "LRRTM4 WILD-TYPE" 
      TCGA-35-4123       TCGA-35-5375       TCGA-38-4625       TCGA-38-4626 
"LRRTM4 WILD-TYPE" "LRRTM4 WILD-TYPE" "LRRTM4 WILD-TYPE" "LRRTM4 WILD-TYPE" 
      TCGA-38-4627       TCGA-38-4628       TCGA-38-4629       TCGA-38-4630 
"LRRTM4 WILD-TYPE" "LRRTM4 WILD-TYPE" "LRRTM4 WILD-TYPE" "LRRTM4 WILD-TYPE" 
      TCGA-38-4631       TCGA-38-4632       TCGA-38-6178       TCGA-44-2655 
  "LRRTM4 MUTATED" "LRRTM4 WILD-TYPE" "LRRTM4 WILD-TYPE" "LRRTM4 WILD-TYPE" 
      TCGA-44-2656       TCGA-44-2657       TCGA-44-2659       TCGA-44-2661 
"LRRTM4 WILD-TYPE" "LRRTM4 WILD-TYPE"   "LRRTM4 MUTATED" "LRRTM4 WILD-TYPE" 
      TCGA-44-2662       TCGA-44-2665       TCGA-44-2666       TCGA-44-2668 
"LRRTM4 WILD-TYPE" "LRRTM4 WILD-TYPE" "LRRTM4 WILD-TYPE" "LRRTM4 WILD-TYPE" 
      TCGA-44-3396       TCGA-44-3398       TCGA-44-3918       TCGA-44-3919 
"LRRTM4 WILD-TYPE" "LRRTM4 WILD-TYPE" "LRRTM4 WILD-TYPE" "LRRTM4 WILD-TYPE" 
      TCGA-44-4112       TCGA-44-5643       TCGA-44-5645       TCGA-44-6144 
"LRRTM4 WILD-TYPE" "LRRTM4 WILD-TYPE" "LRRTM4 WILD-TYPE"   "LRRTM4 MUTATED" 
      TCGA-44-6145       TCGA-44-6146       TCGA-44-6147       TCGA-44-6148 
"LRRTM4 WILD-TYPE" "LRRTM4 WILD-TYPE" "LRRTM4 WILD-TYPE" "LRRTM4 WILD-TYPE" 
      TCGA-44-6774       TCGA-44-6775       TCGA-44-6776       TCGA-44-6777 
"LRRTM4 WILD-TYPE" "LRRTM4 WILD-TYPE" "LRRTM4 WILD-TYPE" "LRRTM4 WILD-TYPE" 
      TCGA-44-6778       TCGA-44-6779       TCGA-49-4486       TCGA-49-4487 
  "LRRTM4 MUTATED" "LRRTM4 WILD-TYPE" "LRRTM4 WILD-TYPE" "LRRTM4 WILD-TYPE" 
      TCGA-49-4488       TCGA-49-4490       TCGA-49-4494       TCGA-49-4501 
"LRRTM4 WILD-TYPE" "LRRTM4 WILD-TYPE"   "LRRTM4 MUTATED" "LRRTM4 WILD-TYPE" 
      TCGA-49-4505       TCGA-49-4506       TCGA-49-4507       TCGA-49-4510 
"LRRTM4 WILD-TYPE" "LRRTM4 WILD-TYPE" "LRRTM4 WILD-TYPE" "LRRTM4 WILD-TYPE" 
      TCGA-49-4512       TCGA-49-4514       TCGA-49-6742       TCGA-49-6743 
"LRRTM4 WILD-TYPE" "LRRTM4 WILD-TYPE" "LRRTM4 WILD-TYPE"   "LRRTM4 MUTATED" 
      TCGA-49-6744       TCGA-49-6745       TCGA-50-5044       TCGA-50-5045 
"LRRTM4 WILD-TYPE" "LRRTM4 WILD-TYPE" "LRRTM4 WILD-TYPE" "LRRTM4 WILD-TYPE" 
      TCGA-50-5049       TCGA-50-5051       TCGA-50-5055       TCGA-50-5066 
"LRRTM4 WILD-TYPE" "LRRTM4 WILD-TYPE" "LRRTM4 WILD-TYPE" "LRRTM4 WILD-TYPE" 
      TCGA-50-5068       TCGA-50-5072       TCGA-50-5930       TCGA-50-5931 
"LRRTM4 WILD-TYPE" "LRRTM4 WILD-TYPE" "LRRTM4 WILD-TYPE" "LRRTM4 WILD-TYPE" 
      TCGA-50-5932       TCGA-50-5933       TCGA-50-5935       TCGA-50-5936 
"LRRTM4 WILD-TYPE" "LRRTM4 WILD-TYPE" "LRRTM4 WILD-TYPE" "LRRTM4 WILD-TYPE" 
      TCGA-50-5939       TCGA-50-5941       TCGA-50-5942       TCGA-50-5944 
"LRRTM4 WILD-TYPE" "LRRTM4 WILD-TYPE" "LRRTM4 WILD-TYPE" "LRRTM4 WILD-TYPE" 
      TCGA-50-5946       TCGA-50-6590       TCGA-50-6591       TCGA-50-6592 
"LRRTM4 WILD-TYPE" "LRRTM4 WILD-TYPE" "LRRTM4 WILD-TYPE" "LRRTM4 WILD-TYPE" 
      TCGA-50-6593       TCGA-50-6594       TCGA-50-6595       TCGA-50-6597 
"LRRTM4 WILD-TYPE" "LRRTM4 WILD-TYPE" "LRRTM4 WILD-TYPE" "LRRTM4 WILD-TYPE" 
      TCGA-55-1592       TCGA-55-1594       TCGA-55-1595       TCGA-55-1596 
  "LRRTM4 MUTATED" "LRRTM4 WILD-TYPE" "LRRTM4 WILD-TYPE" "LRRTM4 WILD-TYPE" 
      TCGA-55-5899       TCGA-55-6543       TCGA-55-6642       TCGA-55-6712 
"LRRTM4 WILD-TYPE" "LRRTM4 WILD-TYPE" "LRRTM4 WILD-TYPE" "LRRTM4 WILD-TYPE" 
      TCGA-64-1676       TCGA-64-1677       TCGA-64-1678       TCGA-64-1680 
  "LRRTM4 MUTATED" "LRRTM4 WILD-TYPE" "LRRTM4 WILD-TYPE" "LRRTM4 WILD-TYPE" 
      TCGA-64-5774       TCGA-64-5775       TCGA-64-5778       TCGA-64-5779 
  "LRRTM4 MUTATED" "LRRTM4 WILD-TYPE" "LRRTM4 WILD-TYPE"   "LRRTM4 MUTATED" 
      TCGA-64-5781       TCGA-64-5815       TCGA-67-3770       TCGA-67-3771 
  "LRRTM4 MUTATED" "LRRTM4 WILD-TYPE" "LRRTM4 WILD-TYPE" "LRRTM4 WILD-TYPE" 
      TCGA-67-3772       TCGA-67-3773       TCGA-67-3774       TCGA-67-6215 
"LRRTM4 WILD-TYPE" "LRRTM4 WILD-TYPE" "LRRTM4 WILD-TYPE" "LRRTM4 WILD-TYPE" 
      TCGA-67-6216       TCGA-67-6217       TCGA-71-6725       TCGA-73-4658 
"LRRTM4 WILD-TYPE" "LRRTM4 WILD-TYPE" "LRRTM4 WILD-TYPE" "LRRTM4 WILD-TYPE" 
      TCGA-73-4659       TCGA-73-4662       TCGA-73-4666       TCGA-73-4668 
"LRRTM4 WILD-TYPE" "LRRTM4 WILD-TYPE" "LRRTM4 WILD-TYPE" "LRRTM4 WILD-TYPE" 
      TCGA-73-4670       TCGA-73-4675       TCGA-73-4676       TCGA-73-4677 
"LRRTM4 WILD-TYPE" "LRRTM4 WILD-TYPE" "LRRTM4 WILD-TYPE"   "LRRTM4 MUTATED" 
      TCGA-91-6828       TCGA-91-6829       TCGA-91-6831       TCGA-91-6835 
"LRRTM4 WILD-TYPE" "LRRTM4 WILD-TYPE" "LRRTM4 WILD-TYPE" "LRRTM4 WILD-TYPE" 
      TCGA-91-6836 
"LRRTM4 WILD-TYPE" 
[1] "hr=" "1.7"
D38V2, continuous
D38V3, binary
[1] "tbl2"
                  cls
clus               [,1] [,2]
  LRRTM4 MUTATED      5   13
  LRRTM4 WILD-TYPE   88   66
        clus
vv       LRRTM4 MUTATED LRRTM4 WILD-TYPE
  FEMALE              5               88
  MALE               13               66
D38V4, continuous
D38V5, multiclass
D38V6, multiclass
    clus
vv   LRRTM4 MUTATED LRRTM4 WILD-TYPE
  T1              5               36
  T2             11               97
  T3              1               13
  T4              1                7
D38V7, multiclass
       clus
vv      LRRTM4 MUTATED LRRTM4 WILD-TYPE
  N0                12               83
  N1                 3               34
  N2+N3              3               32
D38V8, multiclass
    clus
vv   LRRTM4 MUTATED LRRTM4 WILD-TYPE
  M0             15              122
  M1              1                8
  MX              2               20
D38V9, multiclass
     clus
vv    LRRTM4 MUTATED LRRTM4 WILD-TYPE
  I               12               76
  II               2               31
  III              3               36
  IV               1                8
D38V10, binary
[1] "tbl2"
                  cls
clus               [,1] [,2]
  LRRTM4 MUTATED      0   18
  LRRTM4 WILD-TYPE   16  138
     clus
vv    LRRTM4 MUTATED LRRTM4 WILD-TYPE
  NO               0               16
  YES             18              138
D38V11, continuous
D38V12, continuous
D38V13, multiclass
                                             clus
vv                                            LRRTM4 MUTATED LRRTM4 WILD-TYPE
  CURRENT REFORMED SMOKER FOR < OR = 15 YEARS             11               51
  CURRENT REFORMED SMOKER FOR > 15 YEARS                   3               43
  CURRENT SMOKER                                           4               24
  LIFELONG NON-SMOKER                                      0               24
D38V14, continuous

Clustering(39) Variable = KCNT2 MUTATION ANALYSIS
D39V1, survival
                 sevent
clus2              0  1
  KCNT2 MUTATED   12  2
  KCNT2 WILD-TYPE 87 48
  KCNT2 MUTATED KCNT2 WILD-TYPE 
             14             135 
  KCNT2 MUTATED KCNT2 WILD-TYPE 
              2              48 
$`KCNT2 MUTATED`
TCGA-05-4382 TCGA-05-4390 TCGA-05-4396 TCGA-05-4424 TCGA-05-4427 TCGA-05-4432 
       19.92        37.02         9.96        30.02        26.01        25.02 
TCGA-38-4632 TCGA-44-2668 TCGA-49-4514 TCGA-49-6742 TCGA-49-6743 TCGA-50-5049 
       44.61         8.09        43.20        15.02        12.13        48.82 
TCGA-64-1676 TCGA-91-6836 
       56.81         0.36 

$`KCNT2 WILD-TYPE`
TCGA-05-4249 TCGA-05-4250 TCGA-05-4384 TCGA-05-4397 TCGA-05-4398 TCGA-05-4402 
       38.07         3.98        14.01        24.03        47.05         8.02 
TCGA-05-4405 TCGA-05-4415 TCGA-05-4417 TCGA-05-4418 TCGA-05-4420 TCGA-05-4426 
       20.05         2.96        14.93         8.98        29.95        26.01 
TCGA-05-4430 TCGA-05-4433 TCGA-05-4434 TCGA-05-5420 TCGA-05-5423 TCGA-05-5425 
       25.02        24.00        15.02         1.02         4.96         2.96 
TCGA-05-5429 TCGA-05-5715 TCGA-35-3615 TCGA-35-4122 TCGA-35-4123 TCGA-35-5375 
        0.99         2.04         0.46         7.36         5.95         8.68 
TCGA-38-4625 TCGA-38-4626 TCGA-38-4627 TCGA-38-4628 TCGA-38-4629 TCGA-38-4630 
       47.61        85.32        37.71        49.02        28.37        35.28 
TCGA-38-4631 TCGA-38-6178 TCGA-44-2655 TCGA-44-2656 TCGA-44-2657 TCGA-44-2659 
       11.64         5.19        18.87        19.10        13.15        17.39 
TCGA-44-2661 TCGA-44-2662 TCGA-44-2665 TCGA-44-2666 TCGA-44-3396 TCGA-44-3398 
        3.39        15.78        13.15         3.19        10.22         8.32 
TCGA-44-3918 TCGA-44-3919 TCGA-44-4112 TCGA-44-5643 TCGA-44-5645 TCGA-44-6144 
        6.44         6.21         4.60         3.48         6.84         0.30 
TCGA-44-6145 TCGA-44-6146 TCGA-44-6147 TCGA-44-6148 TCGA-44-6774 TCGA-44-6775 
        3.35         9.93         7.76         3.12         5.42         2.70 
TCGA-44-6776 TCGA-44-6777 TCGA-44-6778 TCGA-44-6779 TCGA-49-4486 TCGA-49-4487 
       63.72        32.45        36.49        16.41        76.21        28.11 
TCGA-49-4488 TCGA-49-4490 TCGA-49-4494 TCGA-49-4501 TCGA-49-4505 TCGA-49-4506 
       28.57        12.66        35.54        46.72        14.07        32.84 
TCGA-49-4507 TCGA-49-4510 TCGA-49-4512 TCGA-49-6744 TCGA-49-6745 TCGA-50-5044 
        8.81        29.46        29.75        12.99         4.93        20.48 
TCGA-50-5045 TCGA-50-5051 TCGA-50-5055 TCGA-50-5066 TCGA-50-5068 TCGA-50-5072 
       71.47        14.96        25.81         9.76        49.28         8.05 
TCGA-50-5930 TCGA-50-5931 TCGA-50-5932 TCGA-50-5933 TCGA-50-5935 TCGA-50-5936 
        9.27         8.78        35.87        77.88        21.47         8.45 
TCGA-50-5939 TCGA-50-5941 TCGA-50-5942 TCGA-50-5944 TCGA-50-5946 TCGA-50-6590 
       15.12         9.37         4.44        12.26        11.47        42.31 
TCGA-50-6591 TCGA-50-6592 TCGA-50-6593 TCGA-50-6594 TCGA-50-6595 TCGA-50-6597 
        3.88        25.51        11.05        12.16         6.21        33.37 
TCGA-55-1592 TCGA-55-1594 TCGA-55-1595 TCGA-55-1596 TCGA-55-5899 TCGA-55-6543 
       23.05        38.73        48.62        45.17         2.86         0.07 
TCGA-55-6642 TCGA-55-6712 TCGA-64-1677 TCGA-64-1678 TCGA-64-1680 TCGA-64-5774 
       32.61         0.79        20.65        39.09        37.02        83.84 
TCGA-64-5775 TCGA-64-5778 TCGA-64-5779 TCGA-64-5781 TCGA-64-5815 TCGA-67-3770 
        0.10        30.44        16.67        39.52         7.33         0.99 
TCGA-67-3771 TCGA-67-3772 TCGA-67-3773 TCGA-67-3774 TCGA-67-6215 TCGA-67-6216 
        1.97         0.59         2.04         0.59         0.89         0.69 
TCGA-67-6217 TCGA-71-6725 TCGA-73-4658 TCGA-73-4659 TCGA-73-4662 TCGA-73-4666 
       13.87         2.01        52.57        23.38        29.95        20.28 
TCGA-73-4668 TCGA-73-4670 TCGA-73-4675 TCGA-73-4676 TCGA-73-4677 TCGA-91-6828 
       15.35         0.46         1.32         4.01         1.25         1.22 
TCGA-91-6829 TCGA-91-6831 TCGA-91-6835 
       41.33         1.28         1.15 

  KCNT2 MUTATED KCNT2 WILD-TYPE 
           0.36            0.07 
  KCNT2 MUTATED KCNT2 WILD-TYPE 
          56.81           85.32 
  KCNT2 MUTATED KCNT2 WILD-TYPE 
         25.515          12.990 
[1] "0.4 - 56.8 (25.5)" "0.1 - 85.3 (13.0)"
     TCGA-05-4249      TCGA-05-4250      TCGA-05-4382      TCGA-05-4384 
"KCNT2 WILD-TYPE" "KCNT2 WILD-TYPE"   "KCNT2 MUTATED" "KCNT2 WILD-TYPE" 
     TCGA-05-4390      TCGA-05-4396      TCGA-05-4397      TCGA-05-4398 
  "KCNT2 MUTATED"   "KCNT2 MUTATED" "KCNT2 WILD-TYPE" "KCNT2 WILD-TYPE" 
     TCGA-05-4402      TCGA-05-4405      TCGA-05-4415      TCGA-05-4417 
"KCNT2 WILD-TYPE" "KCNT2 WILD-TYPE" "KCNT2 WILD-TYPE" "KCNT2 WILD-TYPE" 
     TCGA-05-4418      TCGA-05-4420      TCGA-05-4424      TCGA-05-4426 
"KCNT2 WILD-TYPE" "KCNT2 WILD-TYPE"   "KCNT2 MUTATED" "KCNT2 WILD-TYPE" 
     TCGA-05-4427      TCGA-05-4430      TCGA-05-4432      TCGA-05-4433 
  "KCNT2 MUTATED" "KCNT2 WILD-TYPE"   "KCNT2 MUTATED" "KCNT2 WILD-TYPE" 
     TCGA-05-4434      TCGA-05-5420      TCGA-05-5423      TCGA-05-5425 
"KCNT2 WILD-TYPE" "KCNT2 WILD-TYPE" "KCNT2 WILD-TYPE" "KCNT2 WILD-TYPE" 
     TCGA-05-5429      TCGA-05-5715      TCGA-35-3615      TCGA-35-4122 
"KCNT2 WILD-TYPE" "KCNT2 WILD-TYPE" "KCNT2 WILD-TYPE" "KCNT2 WILD-TYPE" 
     TCGA-35-4123      TCGA-35-5375      TCGA-38-4625      TCGA-38-4626 
"KCNT2 WILD-TYPE" "KCNT2 WILD-TYPE" "KCNT2 WILD-TYPE" "KCNT2 WILD-TYPE" 
     TCGA-38-4627      TCGA-38-4628      TCGA-38-4629      TCGA-38-4630 
"KCNT2 WILD-TYPE" "KCNT2 WILD-TYPE" "KCNT2 WILD-TYPE" "KCNT2 WILD-TYPE" 
     TCGA-38-4631      TCGA-38-4632      TCGA-38-6178      TCGA-44-2655 
"KCNT2 WILD-TYPE"   "KCNT2 MUTATED" "KCNT2 WILD-TYPE" "KCNT2 WILD-TYPE" 
     TCGA-44-2656      TCGA-44-2657      TCGA-44-2659      TCGA-44-2661 
"KCNT2 WILD-TYPE" "KCNT2 WILD-TYPE" "KCNT2 WILD-TYPE" "KCNT2 WILD-TYPE" 
     TCGA-44-2662      TCGA-44-2665      TCGA-44-2666      TCGA-44-2668 
"KCNT2 WILD-TYPE" "KCNT2 WILD-TYPE" "KCNT2 WILD-TYPE"   "KCNT2 MUTATED" 
     TCGA-44-3396      TCGA-44-3398      TCGA-44-3918      TCGA-44-3919 
"KCNT2 WILD-TYPE" "KCNT2 WILD-TYPE" "KCNT2 WILD-TYPE" "KCNT2 WILD-TYPE" 
     TCGA-44-4112      TCGA-44-5643      TCGA-44-5645      TCGA-44-6144 
"KCNT2 WILD-TYPE" "KCNT2 WILD-TYPE" "KCNT2 WILD-TYPE" "KCNT2 WILD-TYPE" 
     TCGA-44-6145      TCGA-44-6146      TCGA-44-6147      TCGA-44-6148 
"KCNT2 WILD-TYPE" "KCNT2 WILD-TYPE" "KCNT2 WILD-TYPE" "KCNT2 WILD-TYPE" 
     TCGA-44-6774      TCGA-44-6775      TCGA-44-6776      TCGA-44-6777 
"KCNT2 WILD-TYPE" "KCNT2 WILD-TYPE" "KCNT2 WILD-TYPE" "KCNT2 WILD-TYPE" 
     TCGA-44-6778      TCGA-44-6779      TCGA-49-4486      TCGA-49-4487 
"KCNT2 WILD-TYPE" "KCNT2 WILD-TYPE" "KCNT2 WILD-TYPE" "KCNT2 WILD-TYPE" 
     TCGA-49-4488      TCGA-49-4490      TCGA-49-4494      TCGA-49-4501 
"KCNT2 WILD-TYPE" "KCNT2 WILD-TYPE" "KCNT2 WILD-TYPE" "KCNT2 WILD-TYPE" 
     TCGA-49-4505      TCGA-49-4506      TCGA-49-4507      TCGA-49-4510 
"KCNT2 WILD-TYPE" "KCNT2 WILD-TYPE" "KCNT2 WILD-TYPE" "KCNT2 WILD-TYPE" 
     TCGA-49-4512      TCGA-49-4514      TCGA-49-6742      TCGA-49-6743 
"KCNT2 WILD-TYPE"   "KCNT2 MUTATED"   "KCNT2 MUTATED"   "KCNT2 MUTATED" 
     TCGA-49-6744      TCGA-49-6745      TCGA-50-5044      TCGA-50-5045 
"KCNT2 WILD-TYPE" "KCNT2 WILD-TYPE" "KCNT2 WILD-TYPE" "KCNT2 WILD-TYPE" 
     TCGA-50-5049      TCGA-50-5051      TCGA-50-5055      TCGA-50-5066 
  "KCNT2 MUTATED" "KCNT2 WILD-TYPE" "KCNT2 WILD-TYPE" "KCNT2 WILD-TYPE" 
     TCGA-50-5068      TCGA-50-5072      TCGA-50-5930      TCGA-50-5931 
"KCNT2 WILD-TYPE" "KCNT2 WILD-TYPE" "KCNT2 WILD-TYPE" "KCNT2 WILD-TYPE" 
     TCGA-50-5932      TCGA-50-5933      TCGA-50-5935      TCGA-50-5936 
"KCNT2 WILD-TYPE" "KCNT2 WILD-TYPE" "KCNT2 WILD-TYPE" "KCNT2 WILD-TYPE" 
     TCGA-50-5939      TCGA-50-5941      TCGA-50-5942      TCGA-50-5944 
"KCNT2 WILD-TYPE" "KCNT2 WILD-TYPE" "KCNT2 WILD-TYPE" "KCNT2 WILD-TYPE" 
     TCGA-50-5946      TCGA-50-6590      TCGA-50-6591      TCGA-50-6592 
"KCNT2 WILD-TYPE" "KCNT2 WILD-TYPE" "KCNT2 WILD-TYPE" "KCNT2 WILD-TYPE" 
     TCGA-50-6593      TCGA-50-6594      TCGA-50-6595      TCGA-50-6597 
"KCNT2 WILD-TYPE" "KCNT2 WILD-TYPE" "KCNT2 WILD-TYPE" "KCNT2 WILD-TYPE" 
     TCGA-55-1592      TCGA-55-1594      TCGA-55-1595      TCGA-55-1596 
"KCNT2 WILD-TYPE" "KCNT2 WILD-TYPE" "KCNT2 WILD-TYPE" "KCNT2 WILD-TYPE" 
     TCGA-55-5899      TCGA-55-6543      TCGA-55-6642      TCGA-55-6712 
"KCNT2 WILD-TYPE" "KCNT2 WILD-TYPE" "KCNT2 WILD-TYPE" "KCNT2 WILD-TYPE" 
     TCGA-64-1676      TCGA-64-1677      TCGA-64-1678      TCGA-64-1680 
  "KCNT2 MUTATED" "KCNT2 WILD-TYPE" "KCNT2 WILD-TYPE" "KCNT2 WILD-TYPE" 
     TCGA-64-5774      TCGA-64-5775      TCGA-64-5778      TCGA-64-5779 
"KCNT2 WILD-TYPE" "KCNT2 WILD-TYPE" "KCNT2 WILD-TYPE" "KCNT2 WILD-TYPE" 
     TCGA-64-5781      TCGA-64-5815      TCGA-67-3770      TCGA-67-3771 
"KCNT2 WILD-TYPE" "KCNT2 WILD-TYPE" "KCNT2 WILD-TYPE" "KCNT2 WILD-TYPE" 
     TCGA-67-3772      TCGA-67-3773      TCGA-67-3774      TCGA-67-6215 
"KCNT2 WILD-TYPE" "KCNT2 WILD-TYPE" "KCNT2 WILD-TYPE" "KCNT2 WILD-TYPE" 
     TCGA-67-6216      TCGA-67-6217      TCGA-71-6725      TCGA-73-4658 
"KCNT2 WILD-TYPE" "KCNT2 WILD-TYPE" "KCNT2 WILD-TYPE" "KCNT2 WILD-TYPE" 
     TCGA-73-4659      TCGA-73-4662      TCGA-73-4666      TCGA-73-4668 
"KCNT2 WILD-TYPE" "KCNT2 WILD-TYPE" "KCNT2 WILD-TYPE" "KCNT2 WILD-TYPE" 
     TCGA-73-4670      TCGA-73-4675      TCGA-73-4676      TCGA-73-4677 
"KCNT2 WILD-TYPE" "KCNT2 WILD-TYPE" "KCNT2 WILD-TYPE" "KCNT2 WILD-TYPE" 
     TCGA-91-6828      TCGA-91-6829      TCGA-91-6831      TCGA-91-6835 
"KCNT2 WILD-TYPE" "KCNT2 WILD-TYPE" "KCNT2 WILD-TYPE" "KCNT2 WILD-TYPE" 
     TCGA-91-6836 
  "KCNT2 MUTATED" 
     TCGA-05-4249      TCGA-05-4250      TCGA-05-4382      TCGA-05-4384 
"KCNT2 WILD-TYPE" "KCNT2 WILD-TYPE"   "KCNT2 MUTATED" "KCNT2 WILD-TYPE" 
     TCGA-05-4390      TCGA-05-4396      TCGA-05-4397      TCGA-05-4398 
  "KCNT2 MUTATED"   "KCNT2 MUTATED" "KCNT2 WILD-TYPE" "KCNT2 WILD-TYPE" 
     TCGA-05-4402      TCGA-05-4405      TCGA-05-4415      TCGA-05-4417 
"KCNT2 WILD-TYPE" "KCNT2 WILD-TYPE" "KCNT2 WILD-TYPE" "KCNT2 WILD-TYPE" 
     TCGA-05-4418      TCGA-05-4420      TCGA-05-4424      TCGA-05-4426 
"KCNT2 WILD-TYPE" "KCNT2 WILD-TYPE"   "KCNT2 MUTATED" "KCNT2 WILD-TYPE" 
     TCGA-05-4427      TCGA-05-4430      TCGA-05-4432      TCGA-05-4433 
  "KCNT2 MUTATED" "KCNT2 WILD-TYPE"   "KCNT2 MUTATED" "KCNT2 WILD-TYPE" 
     TCGA-05-4434      TCGA-05-5420      TCGA-05-5423      TCGA-05-5425 
"KCNT2 WILD-TYPE" "KCNT2 WILD-TYPE" "KCNT2 WILD-TYPE" "KCNT2 WILD-TYPE" 
     TCGA-05-5429      TCGA-05-5715      TCGA-35-3615      TCGA-35-4122 
"KCNT2 WILD-TYPE" "KCNT2 WILD-TYPE" "KCNT2 WILD-TYPE" "KCNT2 WILD-TYPE" 
     TCGA-35-4123      TCGA-35-5375      TCGA-38-4625      TCGA-38-4626 
"KCNT2 WILD-TYPE" "KCNT2 WILD-TYPE" "KCNT2 WILD-TYPE" "KCNT2 WILD-TYPE" 
     TCGA-38-4627      TCGA-38-4628      TCGA-38-4629      TCGA-38-4630 
"KCNT2 WILD-TYPE" "KCNT2 WILD-TYPE" "KCNT2 WILD-TYPE" "KCNT2 WILD-TYPE" 
     TCGA-38-4631      TCGA-38-4632      TCGA-38-6178      TCGA-44-2655 
"KCNT2 WILD-TYPE"   "KCNT2 MUTATED" "KCNT2 WILD-TYPE" "KCNT2 WILD-TYPE" 
     TCGA-44-2656      TCGA-44-2657      TCGA-44-2659      TCGA-44-2661 
"KCNT2 WILD-TYPE" "KCNT2 WILD-TYPE" "KCNT2 WILD-TYPE" "KCNT2 WILD-TYPE" 
     TCGA-44-2662      TCGA-44-2665      TCGA-44-2666      TCGA-44-2668 
"KCNT2 WILD-TYPE" "KCNT2 WILD-TYPE" "KCNT2 WILD-TYPE"   "KCNT2 MUTATED" 
     TCGA-44-3396      TCGA-44-3398      TCGA-44-3918      TCGA-44-3919 
"KCNT2 WILD-TYPE" "KCNT2 WILD-TYPE" "KCNT2 WILD-TYPE" "KCNT2 WILD-TYPE" 
     TCGA-44-4112      TCGA-44-5643      TCGA-44-5645      TCGA-44-6144 
"KCNT2 WILD-TYPE" "KCNT2 WILD-TYPE" "KCNT2 WILD-TYPE" "KCNT2 WILD-TYPE" 
     TCGA-44-6145      TCGA-44-6146      TCGA-44-6147      TCGA-44-6148 
"KCNT2 WILD-TYPE" "KCNT2 WILD-TYPE" "KCNT2 WILD-TYPE" "KCNT2 WILD-TYPE" 
     TCGA-44-6774      TCGA-44-6775      TCGA-44-6776      TCGA-44-6777 
"KCNT2 WILD-TYPE" "KCNT2 WILD-TYPE" "KCNT2 WILD-TYPE" "KCNT2 WILD-TYPE" 
     TCGA-44-6778      TCGA-44-6779      TCGA-49-4486      TCGA-49-4487 
"KCNT2 WILD-TYPE" "KCNT2 WILD-TYPE" "KCNT2 WILD-TYPE" "KCNT2 WILD-TYPE" 
     TCGA-49-4488      TCGA-49-4490      TCGA-49-4494      TCGA-49-4501 
"KCNT2 WILD-TYPE" "KCNT2 WILD-TYPE" "KCNT2 WILD-TYPE" "KCNT2 WILD-TYPE" 
     TCGA-49-4505      TCGA-49-4506      TCGA-49-4507      TCGA-49-4510 
"KCNT2 WILD-TYPE" "KCNT2 WILD-TYPE" "KCNT2 WILD-TYPE" "KCNT2 WILD-TYPE" 
     TCGA-49-4512      TCGA-49-4514      TCGA-49-6742      TCGA-49-6743 
"KCNT2 WILD-TYPE"   "KCNT2 MUTATED"   "KCNT2 MUTATED"   "KCNT2 MUTATED" 
     TCGA-49-6744      TCGA-49-6745      TCGA-50-5044      TCGA-50-5045 
"KCNT2 WILD-TYPE" "KCNT2 WILD-TYPE" "KCNT2 WILD-TYPE" "KCNT2 WILD-TYPE" 
     TCGA-50-5049      TCGA-50-5051      TCGA-50-5055      TCGA-50-5066 
  "KCNT2 MUTATED" "KCNT2 WILD-TYPE" "KCNT2 WILD-TYPE" "KCNT2 WILD-TYPE" 
     TCGA-50-5068      TCGA-50-5072      TCGA-50-5930      TCGA-50-5931 
"KCNT2 WILD-TYPE" "KCNT2 WILD-TYPE" "KCNT2 WILD-TYPE" "KCNT2 WILD-TYPE" 
     TCGA-50-5932      TCGA-50-5933      TCGA-50-5935      TCGA-50-5936 
"KCNT2 WILD-TYPE" "KCNT2 WILD-TYPE" "KCNT2 WILD-TYPE" "KCNT2 WILD-TYPE" 
     TCGA-50-5939      TCGA-50-5941      TCGA-50-5942      TCGA-50-5944 
"KCNT2 WILD-TYPE" "KCNT2 WILD-TYPE" "KCNT2 WILD-TYPE" "KCNT2 WILD-TYPE" 
     TCGA-50-5946      TCGA-50-6590      TCGA-50-6591      TCGA-50-6592 
"KCNT2 WILD-TYPE" "KCNT2 WILD-TYPE" "KCNT2 WILD-TYPE" "KCNT2 WILD-TYPE" 
     TCGA-50-6593      TCGA-50-6594      TCGA-50-6595      TCGA-50-6597 
"KCNT2 WILD-TYPE" "KCNT2 WILD-TYPE" "KCNT2 WILD-TYPE" "KCNT2 WILD-TYPE" 
     TCGA-55-1592      TCGA-55-1594      TCGA-55-1595      TCGA-55-1596 
"KCNT2 WILD-TYPE" "KCNT2 WILD-TYPE" "KCNT2 WILD-TYPE" "KCNT2 WILD-TYPE" 
     TCGA-55-5899      TCGA-55-6543      TCGA-55-6642      TCGA-55-6712 
"KCNT2 WILD-TYPE" "KCNT2 WILD-TYPE" "KCNT2 WILD-TYPE" "KCNT2 WILD-TYPE" 
     TCGA-64-1676      TCGA-64-1677      TCGA-64-1678      TCGA-64-1680 
  "KCNT2 MUTATED" "KCNT2 WILD-TYPE" "KCNT2 WILD-TYPE" "KCNT2 WILD-TYPE" 
     TCGA-64-5774      TCGA-64-5775      TCGA-64-5778      TCGA-64-5779 
"KCNT2 WILD-TYPE" "KCNT2 WILD-TYPE" "KCNT2 WILD-TYPE" "KCNT2 WILD-TYPE" 
     TCGA-64-5781      TCGA-64-5815      TCGA-67-3770      TCGA-67-3771 
"KCNT2 WILD-TYPE" "KCNT2 WILD-TYPE" "KCNT2 WILD-TYPE" "KCNT2 WILD-TYPE" 
     TCGA-67-3772      TCGA-67-3773      TCGA-67-3774      TCGA-67-6215 
"KCNT2 WILD-TYPE" "KCNT2 WILD-TYPE" "KCNT2 WILD-TYPE" "KCNT2 WILD-TYPE" 
     TCGA-67-6216      TCGA-67-6217      TCGA-71-6725      TCGA-73-4658 
"KCNT2 WILD-TYPE" "KCNT2 WILD-TYPE" "KCNT2 WILD-TYPE" "KCNT2 WILD-TYPE" 
     TCGA-73-4659      TCGA-73-4662      TCGA-73-4666      TCGA-73-4668 
"KCNT2 WILD-TYPE" "KCNT2 WILD-TYPE" "KCNT2 WILD-TYPE" "KCNT2 WILD-TYPE" 
     TCGA-73-4670      TCGA-73-4675      TCGA-73-4676      TCGA-73-4677 
"KCNT2 WILD-TYPE" "KCNT2 WILD-TYPE" "KCNT2 WILD-TYPE" "KCNT2 WILD-TYPE" 
     TCGA-91-6828      TCGA-91-6829      TCGA-91-6831      TCGA-91-6835 
"KCNT2 WILD-TYPE" "KCNT2 WILD-TYPE" "KCNT2 WILD-TYPE" "KCNT2 WILD-TYPE" 
     TCGA-91-6836 
  "KCNT2 MUTATED" 
     TCGA-05-4249      TCGA-05-4250      TCGA-05-4382      TCGA-05-4384 
"KCNT2 WILD-TYPE" "KCNT2 WILD-TYPE"   "KCNT2 MUTATED" "KCNT2 WILD-TYPE" 
     TCGA-05-4390      TCGA-05-4396      TCGA-05-4397      TCGA-05-4398 
  "KCNT2 MUTATED"   "KCNT2 MUTATED" "KCNT2 WILD-TYPE" "KCNT2 WILD-TYPE" 
     TCGA-05-4402      TCGA-05-4405      TCGA-05-4415      TCGA-05-4417 
"KCNT2 WILD-TYPE" "KCNT2 WILD-TYPE" "KCNT2 WILD-TYPE" "KCNT2 WILD-TYPE" 
     TCGA-05-4418      TCGA-05-4420      TCGA-05-4424      TCGA-05-4426 
"KCNT2 WILD-TYPE" "KCNT2 WILD-TYPE"   "KCNT2 MUTATED" "KCNT2 WILD-TYPE" 
     TCGA-05-4427      TCGA-05-4430      TCGA-05-4432      TCGA-05-4433 
  "KCNT2 MUTATED" "KCNT2 WILD-TYPE"   "KCNT2 MUTATED" "KCNT2 WILD-TYPE" 
     TCGA-05-4434      TCGA-05-5420      TCGA-05-5423      TCGA-05-5425 
"KCNT2 WILD-TYPE" "KCNT2 WILD-TYPE" "KCNT2 WILD-TYPE" "KCNT2 WILD-TYPE" 
     TCGA-05-5429      TCGA-05-5715      TCGA-35-3615      TCGA-35-4122 
"KCNT2 WILD-TYPE" "KCNT2 WILD-TYPE" "KCNT2 WILD-TYPE" "KCNT2 WILD-TYPE" 
     TCGA-35-4123      TCGA-35-5375      TCGA-38-4625      TCGA-38-4626 
"KCNT2 WILD-TYPE" "KCNT2 WILD-TYPE" "KCNT2 WILD-TYPE" "KCNT2 WILD-TYPE" 
     TCGA-38-4627      TCGA-38-4628      TCGA-38-4629      TCGA-38-4630 
"KCNT2 WILD-TYPE" "KCNT2 WILD-TYPE" "KCNT2 WILD-TYPE" "KCNT2 WILD-TYPE" 
     TCGA-38-4631      TCGA-38-4632      TCGA-38-6178      TCGA-44-2655 
"KCNT2 WILD-TYPE"   "KCNT2 MUTATED" "KCNT2 WILD-TYPE" "KCNT2 WILD-TYPE" 
     TCGA-44-2656      TCGA-44-2657      TCGA-44-2659      TCGA-44-2661 
"KCNT2 WILD-TYPE" "KCNT2 WILD-TYPE" "KCNT2 WILD-TYPE" "KCNT2 WILD-TYPE" 
     TCGA-44-2662      TCGA-44-2665      TCGA-44-2666      TCGA-44-2668 
"KCNT2 WILD-TYPE" "KCNT2 WILD-TYPE" "KCNT2 WILD-TYPE"   "KCNT2 MUTATED" 
     TCGA-44-3396      TCGA-44-3398      TCGA-44-3918      TCGA-44-3919 
"KCNT2 WILD-TYPE" "KCNT2 WILD-TYPE" "KCNT2 WILD-TYPE" "KCNT2 WILD-TYPE" 
     TCGA-44-4112      TCGA-44-5643      TCGA-44-5645      TCGA-44-6144 
"KCNT2 WILD-TYPE" "KCNT2 WILD-TYPE" "KCNT2 WILD-TYPE" "KCNT2 WILD-TYPE" 
     TCGA-44-6145      TCGA-44-6146      TCGA-44-6147      TCGA-44-6148 
"KCNT2 WILD-TYPE" "KCNT2 WILD-TYPE" "KCNT2 WILD-TYPE" "KCNT2 WILD-TYPE" 
     TCGA-44-6774      TCGA-44-6775      TCGA-44-6776      TCGA-44-6777 
"KCNT2 WILD-TYPE" "KCNT2 WILD-TYPE" "KCNT2 WILD-TYPE" "KCNT2 WILD-TYPE" 
     TCGA-44-6778      TCGA-44-6779      TCGA-49-4486      TCGA-49-4487 
"KCNT2 WILD-TYPE" "KCNT2 WILD-TYPE" "KCNT2 WILD-TYPE" "KCNT2 WILD-TYPE" 
     TCGA-49-4488      TCGA-49-4490      TCGA-49-4494      TCGA-49-4501 
"KCNT2 WILD-TYPE" "KCNT2 WILD-TYPE" "KCNT2 WILD-TYPE" "KCNT2 WILD-TYPE" 
     TCGA-49-4505      TCGA-49-4506      TCGA-49-4507      TCGA-49-4510 
"KCNT2 WILD-TYPE" "KCNT2 WILD-TYPE" "KCNT2 WILD-TYPE" "KCNT2 WILD-TYPE" 
     TCGA-49-4512      TCGA-49-4514      TCGA-49-6742      TCGA-49-6743 
"KCNT2 WILD-TYPE"   "KCNT2 MUTATED"   "KCNT2 MUTATED"   "KCNT2 MUTATED" 
     TCGA-49-6744      TCGA-49-6745      TCGA-50-5044      TCGA-50-5045 
"KCNT2 WILD-TYPE" "KCNT2 WILD-TYPE" "KCNT2 WILD-TYPE" "KCNT2 WILD-TYPE" 
     TCGA-50-5049      TCGA-50-5051      TCGA-50-5055      TCGA-50-5066 
  "KCNT2 MUTATED" "KCNT2 WILD-TYPE" "KCNT2 WILD-TYPE" "KCNT2 WILD-TYPE" 
     TCGA-50-5068      TCGA-50-5072      TCGA-50-5930      TCGA-50-5931 
"KCNT2 WILD-TYPE" "KCNT2 WILD-TYPE" "KCNT2 WILD-TYPE" "KCNT2 WILD-TYPE" 
     TCGA-50-5932      TCGA-50-5933      TCGA-50-5935      TCGA-50-5936 
"KCNT2 WILD-TYPE" "KCNT2 WILD-TYPE" "KCNT2 WILD-TYPE" "KCNT2 WILD-TYPE" 
     TCGA-50-5939      TCGA-50-5941      TCGA-50-5942      TCGA-50-5944 
"KCNT2 WILD-TYPE" "KCNT2 WILD-TYPE" "KCNT2 WILD-TYPE" "KCNT2 WILD-TYPE" 
     TCGA-50-5946      TCGA-50-6590      TCGA-50-6591      TCGA-50-6592 
"KCNT2 WILD-TYPE" "KCNT2 WILD-TYPE" "KCNT2 WILD-TYPE" "KCNT2 WILD-TYPE" 
     TCGA-50-6593      TCGA-50-6594      TCGA-50-6595      TCGA-50-6597 
"KCNT2 WILD-TYPE" "KCNT2 WILD-TYPE" "KCNT2 WILD-TYPE" "KCNT2 WILD-TYPE" 
     TCGA-55-1592      TCGA-55-1594      TCGA-55-1595      TCGA-55-1596 
"KCNT2 WILD-TYPE" "KCNT2 WILD-TYPE" "KCNT2 WILD-TYPE" "KCNT2 WILD-TYPE" 
     TCGA-55-5899      TCGA-55-6543      TCGA-55-6642      TCGA-55-6712 
"KCNT2 WILD-TYPE" "KCNT2 WILD-TYPE" "KCNT2 WILD-TYPE" "KCNT2 WILD-TYPE" 
     TCGA-64-1676      TCGA-64-1677      TCGA-64-1678      TCGA-64-1680 
  "KCNT2 MUTATED" "KCNT2 WILD-TYPE" "KCNT2 WILD-TYPE" "KCNT2 WILD-TYPE" 
     TCGA-64-5774      TCGA-64-5775      TCGA-64-5778      TCGA-64-5779 
"KCNT2 WILD-TYPE" "KCNT2 WILD-TYPE" "KCNT2 WILD-TYPE" "KCNT2 WILD-TYPE" 
     TCGA-64-5781      TCGA-64-5815      TCGA-67-3770      TCGA-67-3771 
"KCNT2 WILD-TYPE" "KCNT2 WILD-TYPE" "KCNT2 WILD-TYPE" "KCNT2 WILD-TYPE" 
     TCGA-67-3772      TCGA-67-3773      TCGA-67-3774      TCGA-67-6215 
"KCNT2 WILD-TYPE" "KCNT2 WILD-TYPE" "KCNT2 WILD-TYPE" "KCNT2 WILD-TYPE" 
     TCGA-67-6216      TCGA-67-6217      TCGA-71-6725      TCGA-73-4658 
"KCNT2 WILD-TYPE" "KCNT2 WILD-TYPE" "KCNT2 WILD-TYPE" "KCNT2 WILD-TYPE" 
     TCGA-73-4659      TCGA-73-4662      TCGA-73-4666      TCGA-73-4668 
"KCNT2 WILD-TYPE" "KCNT2 WILD-TYPE" "KCNT2 WILD-TYPE" "KCNT2 WILD-TYPE" 
     TCGA-73-4670      TCGA-73-4675      TCGA-73-4676      TCGA-73-4677 
"KCNT2 WILD-TYPE" "KCNT2 WILD-TYPE" "KCNT2 WILD-TYPE" "KCNT2 WILD-TYPE" 
     TCGA-91-6828      TCGA-91-6829      TCGA-91-6831      TCGA-91-6835 
"KCNT2 WILD-TYPE" "KCNT2 WILD-TYPE" "KCNT2 WILD-TYPE" "KCNT2 WILD-TYPE" 
     TCGA-91-6836 
  "KCNT2 MUTATED" 
[1] "hr=" "3.6"
D39V2, continuous
D39V3, binary
[1] "tbl2"
                 cls
clus              [,1] [,2]
  KCNT2 MUTATED      6   11
  KCNT2 WILD-TYPE   87   68
        clus
vv       KCNT2 MUTATED KCNT2 WILD-TYPE
  FEMALE             6              87
  MALE              11              68
D39V4, continuous
D39V5, multiclass
D39V6, multiclass
    clus
vv   KCNT2 MUTATED KCNT2 WILD-TYPE
  T1             3              38
  T2            11              97
  T3             2              12
  T4             1               7
D39V7, multiclass
       clus
vv      KCNT2 MUTATED KCNT2 WILD-TYPE
  N0               10              85
  N1                5              32
  N2+N3             2              33
D39V8, multiclass
    clus
vv   KCNT2 MUTATED KCNT2 WILD-TYPE
  M0            11             126
  M1             2               7
  MX             4              18
D39V9, multiclass
     clus
vv    KCNT2 MUTATED KCNT2 WILD-TYPE
  I               8              80
  II              5              28
  III             2              37
  IV              2               7
D39V10, binary
[1] "tbl2"
                 cls
clus              [,1] [,2]
  KCNT2 MUTATED      1   16
  KCNT2 WILD-TYPE   15  140
     clus
vv    KCNT2 MUTATED KCNT2 WILD-TYPE
  NO              1              15
  YES            16             140
D39V11, continuous
D39V12, continuous
D39V13, multiclass
                                             clus
vv                                            KCNT2 MUTATED KCNT2 WILD-TYPE
  CURRENT REFORMED SMOKER FOR < OR = 15 YEARS             9              53
  CURRENT REFORMED SMOKER FOR > 15 YEARS                  3              43
  CURRENT SMOKER                                          4              24
  LIFELONG NON-SMOKER                                     0              24
D39V14, continuous

Clustering(40) Variable = HEATR7B2 MUTATION ANALYSIS
D40V1, survival
                    sevent
clus2                 0  1
  HEATR7B2 MUTATED   11  7
  HEATR7B2 WILD-TYPE 88 43
  HEATR7B2 MUTATED HEATR7B2 WILD-TYPE 
                18                131 
  HEATR7B2 MUTATED HEATR7B2 WILD-TYPE 
                 7                 43 
$`HEATR7B2 MUTATED`
TCGA-05-4382 TCGA-05-4390 TCGA-05-4396 TCGA-05-4417 TCGA-05-4424 TCGA-05-4427 
       19.92        37.02         9.96        14.93        30.02        26.01 
TCGA-38-4629 TCGA-44-3918 TCGA-44-6776 TCGA-49-4505 TCGA-49-4506 TCGA-49-6743 
       28.37         6.44        63.72        14.07        32.84        12.13 
TCGA-50-5044 TCGA-50-6590 TCGA-64-1676 TCGA-64-5781 TCGA-73-4677 TCGA-91-6831 
       20.48        42.31        56.81        39.52         1.25         1.28 

$`HEATR7B2 WILD-TYPE`
TCGA-05-4249 TCGA-05-4250 TCGA-05-4384 TCGA-05-4397 TCGA-05-4398 TCGA-05-4402 
       38.07         3.98        14.01        24.03        47.05         8.02 
TCGA-05-4405 TCGA-05-4415 TCGA-05-4418 TCGA-05-4420 TCGA-05-4426 TCGA-05-4430 
       20.05         2.96         8.98        29.95        26.01        25.02 
TCGA-05-4432 TCGA-05-4433 TCGA-05-4434 TCGA-05-5420 TCGA-05-5423 TCGA-05-5425 
       25.02        24.00        15.02         1.02         4.96         2.96 
TCGA-05-5429 TCGA-05-5715 TCGA-35-3615 TCGA-35-4122 TCGA-35-4123 TCGA-35-5375 
        0.99         2.04         0.46         7.36         5.95         8.68 
TCGA-38-4625 TCGA-38-4626 TCGA-38-4627 TCGA-38-4628 TCGA-38-4630 TCGA-38-4631 
       47.61        85.32        37.71        49.02        35.28        11.64 
TCGA-38-4632 TCGA-38-6178 TCGA-44-2655 TCGA-44-2656 TCGA-44-2657 TCGA-44-2659 
       44.61         5.19        18.87        19.10        13.15        17.39 
TCGA-44-2661 TCGA-44-2662 TCGA-44-2665 TCGA-44-2666 TCGA-44-2668 TCGA-44-3396 
        3.39        15.78        13.15         3.19         8.09        10.22 
TCGA-44-3398 TCGA-44-3919 TCGA-44-4112 TCGA-44-5643 TCGA-44-5645 TCGA-44-6144 
        8.32         6.21         4.60         3.48         6.84         0.30 
TCGA-44-6145 TCGA-44-6146 TCGA-44-6147 TCGA-44-6148 TCGA-44-6774 TCGA-44-6775 
        3.35         9.93         7.76         3.12         5.42         2.70 
TCGA-44-6777 TCGA-44-6778 TCGA-44-6779 TCGA-49-4486 TCGA-49-4487 TCGA-49-4488 
       32.45        36.49        16.41        76.21        28.11        28.57 
TCGA-49-4490 TCGA-49-4494 TCGA-49-4501 TCGA-49-4507 TCGA-49-4510 TCGA-49-4512 
       12.66        35.54        46.72         8.81        29.46        29.75 
TCGA-49-4514 TCGA-49-6742 TCGA-49-6744 TCGA-49-6745 TCGA-50-5045 TCGA-50-5049 
       43.20        15.02        12.99         4.93        71.47        48.82 
TCGA-50-5051 TCGA-50-5055 TCGA-50-5066 TCGA-50-5068 TCGA-50-5072 TCGA-50-5930 
       14.96        25.81         9.76        49.28         8.05         9.27 
TCGA-50-5931 TCGA-50-5932 TCGA-50-5933 TCGA-50-5935 TCGA-50-5936 TCGA-50-5939 
        8.78        35.87        77.88        21.47         8.45        15.12 
TCGA-50-5941 TCGA-50-5942 TCGA-50-5944 TCGA-50-5946 TCGA-50-6591 TCGA-50-6592 
        9.37         4.44        12.26        11.47         3.88        25.51 
TCGA-50-6593 TCGA-50-6594 TCGA-50-6595 TCGA-50-6597 TCGA-55-1592 TCGA-55-1594 
       11.05        12.16         6.21        33.37        23.05        38.73 
TCGA-55-1595 TCGA-55-1596 TCGA-55-5899 TCGA-55-6543 TCGA-55-6642 TCGA-55-6712 
       48.62        45.17         2.86         0.07        32.61         0.79 
TCGA-64-1677 TCGA-64-1678 TCGA-64-1680 TCGA-64-5774 TCGA-64-5775 TCGA-64-5778 
       20.65        39.09        37.02        83.84         0.10        30.44 
TCGA-64-5779 TCGA-64-5815 TCGA-67-3770 TCGA-67-3771 TCGA-67-3772 TCGA-67-3773 
       16.67         7.33         0.99         1.97         0.59         2.04 
TCGA-67-3774 TCGA-67-6215 TCGA-67-6216 TCGA-67-6217 TCGA-71-6725 TCGA-73-4658 
        0.59         0.89         0.69        13.87         2.01        52.57 
TCGA-73-4659 TCGA-73-4662 TCGA-73-4666 TCGA-73-4668 TCGA-73-4670 TCGA-73-4675 
       23.38        29.95        20.28        15.35         0.46         1.32 
TCGA-73-4676 TCGA-91-6828 TCGA-91-6829 TCGA-91-6835 TCGA-91-6836 
        4.01         1.22        41.33         1.15         0.36 

  HEATR7B2 MUTATED HEATR7B2 WILD-TYPE 
              1.25               0.07 
  HEATR7B2 MUTATED HEATR7B2 WILD-TYPE 
             63.72              85.32 
  HEATR7B2 MUTATED HEATR7B2 WILD-TYPE 
            23.245             12.660 
[1] "1.2 - 63.7 (23.2)" "0.1 - 85.3 (12.7)"
        TCGA-05-4249         TCGA-05-4250         TCGA-05-4382 
"HEATR7B2 WILD-TYPE" "HEATR7B2 WILD-TYPE"   "HEATR7B2 MUTATED" 
        TCGA-05-4384         TCGA-05-4390         TCGA-05-4396 
"HEATR7B2 WILD-TYPE"   "HEATR7B2 MUTATED"   "HEATR7B2 MUTATED" 
        TCGA-05-4397         TCGA-05-4398         TCGA-05-4402 
"HEATR7B2 WILD-TYPE" "HEATR7B2 WILD-TYPE" "HEATR7B2 WILD-TYPE" 
        TCGA-05-4405         TCGA-05-4415         TCGA-05-4417 
"HEATR7B2 WILD-TYPE" "HEATR7B2 WILD-TYPE"   "HEATR7B2 MUTATED" 
        TCGA-05-4418         TCGA-05-4420         TCGA-05-4424 
"HEATR7B2 WILD-TYPE" "HEATR7B2 WILD-TYPE"   "HEATR7B2 MUTATED" 
        TCGA-05-4426         TCGA-05-4427         TCGA-05-4430 
"HEATR7B2 WILD-TYPE"   "HEATR7B2 MUTATED" "HEATR7B2 WILD-TYPE" 
        TCGA-05-4432         TCGA-05-4433         TCGA-05-4434 
"HEATR7B2 WILD-TYPE" "HEATR7B2 WILD-TYPE" "HEATR7B2 WILD-TYPE" 
        TCGA-05-5420         TCGA-05-5423         TCGA-05-5425 
"HEATR7B2 WILD-TYPE" "HEATR7B2 WILD-TYPE" "HEATR7B2 WILD-TYPE" 
        TCGA-05-5429         TCGA-05-5715         TCGA-35-3615 
"HEATR7B2 WILD-TYPE" "HEATR7B2 WILD-TYPE" "HEATR7B2 WILD-TYPE" 
        TCGA-35-4122         TCGA-35-4123         TCGA-35-5375 
"HEATR7B2 WILD-TYPE" "HEATR7B2 WILD-TYPE" "HEATR7B2 WILD-TYPE" 
        TCGA-38-4625         TCGA-38-4626         TCGA-38-4627 
"HEATR7B2 WILD-TYPE" "HEATR7B2 WILD-TYPE" "HEATR7B2 WILD-TYPE" 
        TCGA-38-4628         TCGA-38-4629         TCGA-38-4630 
"HEATR7B2 WILD-TYPE"   "HEATR7B2 MUTATED" "HEATR7B2 WILD-TYPE" 
        TCGA-38-4631         TCGA-38-4632         TCGA-38-6178 
"HEATR7B2 WILD-TYPE" "HEATR7B2 WILD-TYPE" "HEATR7B2 WILD-TYPE" 
        TCGA-44-2655         TCGA-44-2656         TCGA-44-2657 
"HEATR7B2 WILD-TYPE" "HEATR7B2 WILD-TYPE" "HEATR7B2 WILD-TYPE" 
        TCGA-44-2659         TCGA-44-2661         TCGA-44-2662 
"HEATR7B2 WILD-TYPE" "HEATR7B2 WILD-TYPE" "HEATR7B2 WILD-TYPE" 
        TCGA-44-2665         TCGA-44-2666         TCGA-44-2668 
"HEATR7B2 WILD-TYPE" "HEATR7B2 WILD-TYPE" "HEATR7B2 WILD-TYPE" 
        TCGA-44-3396         TCGA-44-3398         TCGA-44-3918 
"HEATR7B2 WILD-TYPE" "HEATR7B2 WILD-TYPE"   "HEATR7B2 MUTATED" 
        TCGA-44-3919         TCGA-44-4112         TCGA-44-5643 
"HEATR7B2 WILD-TYPE" "HEATR7B2 WILD-TYPE" "HEATR7B2 WILD-TYPE" 
        TCGA-44-5645         TCGA-44-6144         TCGA-44-6145 
"HEATR7B2 WILD-TYPE" "HEATR7B2 WILD-TYPE" "HEATR7B2 WILD-TYPE" 
        TCGA-44-6146         TCGA-44-6147         TCGA-44-6148 
"HEATR7B2 WILD-TYPE" "HEATR7B2 WILD-TYPE" "HEATR7B2 WILD-TYPE" 
        TCGA-44-6774         TCGA-44-6775         TCGA-44-6776 
"HEATR7B2 WILD-TYPE" "HEATR7B2 WILD-TYPE"   "HEATR7B2 MUTATED" 
        TCGA-44-6777         TCGA-44-6778         TCGA-44-6779 
"HEATR7B2 WILD-TYPE" "HEATR7B2 WILD-TYPE" "HEATR7B2 WILD-TYPE" 
        TCGA-49-4486         TCGA-49-4487         TCGA-49-4488 
"HEATR7B2 WILD-TYPE" "HEATR7B2 WILD-TYPE" "HEATR7B2 WILD-TYPE" 
        TCGA-49-4490         TCGA-49-4494         TCGA-49-4501 
"HEATR7B2 WILD-TYPE" "HEATR7B2 WILD-TYPE" "HEATR7B2 WILD-TYPE" 
        TCGA-49-4505         TCGA-49-4506         TCGA-49-4507 
  "HEATR7B2 MUTATED"   "HEATR7B2 MUTATED" "HEATR7B2 WILD-TYPE" 
        TCGA-49-4510         TCGA-49-4512         TCGA-49-4514 
"HEATR7B2 WILD-TYPE" "HEATR7B2 WILD-TYPE" "HEATR7B2 WILD-TYPE" 
        TCGA-49-6742         TCGA-49-6743         TCGA-49-6744 
"HEATR7B2 WILD-TYPE"   "HEATR7B2 MUTATED" "HEATR7B2 WILD-TYPE" 
        TCGA-49-6745         TCGA-50-5044         TCGA-50-5045 
"HEATR7B2 WILD-TYPE"   "HEATR7B2 MUTATED" "HEATR7B2 WILD-TYPE" 
        TCGA-50-5049         TCGA-50-5051         TCGA-50-5055 
"HEATR7B2 WILD-TYPE" "HEATR7B2 WILD-TYPE" "HEATR7B2 WILD-TYPE" 
        TCGA-50-5066         TCGA-50-5068         TCGA-50-5072 
"HEATR7B2 WILD-TYPE" "HEATR7B2 WILD-TYPE" "HEATR7B2 WILD-TYPE" 
        TCGA-50-5930         TCGA-50-5931         TCGA-50-5932 
"HEATR7B2 WILD-TYPE" "HEATR7B2 WILD-TYPE" "HEATR7B2 WILD-TYPE" 
        TCGA-50-5933         TCGA-50-5935         TCGA-50-5936 
"HEATR7B2 WILD-TYPE" "HEATR7B2 WILD-TYPE" "HEATR7B2 WILD-TYPE" 
        TCGA-50-5939         TCGA-50-5941         TCGA-50-5942 
"HEATR7B2 WILD-TYPE" "HEATR7B2 WILD-TYPE" "HEATR7B2 WILD-TYPE" 
        TCGA-50-5944         TCGA-50-5946         TCGA-50-6590 
"HEATR7B2 WILD-TYPE" "HEATR7B2 WILD-TYPE"   "HEATR7B2 MUTATED" 
        TCGA-50-6591         TCGA-50-6592         TCGA-50-6593 
"HEATR7B2 WILD-TYPE" "HEATR7B2 WILD-TYPE" "HEATR7B2 WILD-TYPE" 
        TCGA-50-6594         TCGA-50-6595         TCGA-50-6597 
"HEATR7B2 WILD-TYPE" "HEATR7B2 WILD-TYPE" "HEATR7B2 WILD-TYPE" 
        TCGA-55-1592         TCGA-55-1594         TCGA-55-1595 
"HEATR7B2 WILD-TYPE" "HEATR7B2 WILD-TYPE" "HEATR7B2 WILD-TYPE" 
        TCGA-55-1596         TCGA-55-5899         TCGA-55-6543 
"HEATR7B2 WILD-TYPE" "HEATR7B2 WILD-TYPE" "HEATR7B2 WILD-TYPE" 
        TCGA-55-6642         TCGA-55-6712         TCGA-64-1676 
"HEATR7B2 WILD-TYPE" "HEATR7B2 WILD-TYPE"   "HEATR7B2 MUTATED" 
        TCGA-64-1677         TCGA-64-1678         TCGA-64-1680 
"HEATR7B2 WILD-TYPE" "HEATR7B2 WILD-TYPE" "HEATR7B2 WILD-TYPE" 
        TCGA-64-5774         TCGA-64-5775         TCGA-64-5778 
"HEATR7B2 WILD-TYPE" "HEATR7B2 WILD-TYPE" "HEATR7B2 WILD-TYPE" 
        TCGA-64-5779         TCGA-64-5781         TCGA-64-5815 
"HEATR7B2 WILD-TYPE"   "HEATR7B2 MUTATED" "HEATR7B2 WILD-TYPE" 
        TCGA-67-3770         TCGA-67-3771         TCGA-67-3772 
"HEATR7B2 WILD-TYPE" "HEATR7B2 WILD-TYPE" "HEATR7B2 WILD-TYPE" 
        TCGA-67-3773         TCGA-67-3774         TCGA-67-6215 
"HEATR7B2 WILD-TYPE" "HEATR7B2 WILD-TYPE" "HEATR7B2 WILD-TYPE" 
        TCGA-67-6216         TCGA-67-6217         TCGA-71-6725 
"HEATR7B2 WILD-TYPE" "HEATR7B2 WILD-TYPE" "HEATR7B2 WILD-TYPE" 
        TCGA-73-4658         TCGA-73-4659         TCGA-73-4662 
"HEATR7B2 WILD-TYPE" "HEATR7B2 WILD-TYPE" "HEATR7B2 WILD-TYPE" 
        TCGA-73-4666         TCGA-73-4668         TCGA-73-4670 
"HEATR7B2 WILD-TYPE" "HEATR7B2 WILD-TYPE" "HEATR7B2 WILD-TYPE" 
        TCGA-73-4675         TCGA-73-4676         TCGA-73-4677 
"HEATR7B2 WILD-TYPE" "HEATR7B2 WILD-TYPE"   "HEATR7B2 MUTATED" 
        TCGA-91-6828         TCGA-91-6829         TCGA-91-6831 
"HEATR7B2 WILD-TYPE" "HEATR7B2 WILD-TYPE"   "HEATR7B2 MUTATED" 
        TCGA-91-6835         TCGA-91-6836 
"HEATR7B2 WILD-TYPE" "HEATR7B2 WILD-TYPE" 
        TCGA-05-4249         TCGA-05-4250         TCGA-05-4382 
"HEATR7B2 WILD-TYPE" "HEATR7B2 WILD-TYPE"   "HEATR7B2 MUTATED" 
        TCGA-05-4384         TCGA-05-4390         TCGA-05-4396 
"HEATR7B2 WILD-TYPE"   "HEATR7B2 MUTATED"   "HEATR7B2 MUTATED" 
        TCGA-05-4397         TCGA-05-4398         TCGA-05-4402 
"HEATR7B2 WILD-TYPE" "HEATR7B2 WILD-TYPE" "HEATR7B2 WILD-TYPE" 
        TCGA-05-4405         TCGA-05-4415         TCGA-05-4417 
"HEATR7B2 WILD-TYPE" "HEATR7B2 WILD-TYPE"   "HEATR7B2 MUTATED" 
        TCGA-05-4418         TCGA-05-4420         TCGA-05-4424 
"HEATR7B2 WILD-TYPE" "HEATR7B2 WILD-TYPE"   "HEATR7B2 MUTATED" 
        TCGA-05-4426         TCGA-05-4427         TCGA-05-4430 
"HEATR7B2 WILD-TYPE"   "HEATR7B2 MUTATED" "HEATR7B2 WILD-TYPE" 
        TCGA-05-4432         TCGA-05-4433         TCGA-05-4434 
"HEATR7B2 WILD-TYPE" "HEATR7B2 WILD-TYPE" "HEATR7B2 WILD-TYPE" 
        TCGA-05-5420         TCGA-05-5423         TCGA-05-5425 
"HEATR7B2 WILD-TYPE" "HEATR7B2 WILD-TYPE" "HEATR7B2 WILD-TYPE" 
        TCGA-05-5429         TCGA-05-5715         TCGA-35-3615 
"HEATR7B2 WILD-TYPE" "HEATR7B2 WILD-TYPE" "HEATR7B2 WILD-TYPE" 
        TCGA-35-4122         TCGA-35-4123         TCGA-35-5375 
"HEATR7B2 WILD-TYPE" "HEATR7B2 WILD-TYPE" "HEATR7B2 WILD-TYPE" 
        TCGA-38-4625         TCGA-38-4626         TCGA-38-4627 
"HEATR7B2 WILD-TYPE" "HEATR7B2 WILD-TYPE" "HEATR7B2 WILD-TYPE" 
        TCGA-38-4628         TCGA-38-4629         TCGA-38-4630 
"HEATR7B2 WILD-TYPE"   "HEATR7B2 MUTATED" "HEATR7B2 WILD-TYPE" 
        TCGA-38-4631         TCGA-38-4632         TCGA-38-6178 
"HEATR7B2 WILD-TYPE" "HEATR7B2 WILD-TYPE" "HEATR7B2 WILD-TYPE" 
        TCGA-44-2655         TCGA-44-2656         TCGA-44-2657 
"HEATR7B2 WILD-TYPE" "HEATR7B2 WILD-TYPE" "HEATR7B2 WILD-TYPE" 
        TCGA-44-2659         TCGA-44-2661         TCGA-44-2662 
"HEATR7B2 WILD-TYPE" "HEATR7B2 WILD-TYPE" "HEATR7B2 WILD-TYPE" 
        TCGA-44-2665         TCGA-44-2666         TCGA-44-2668 
"HEATR7B2 WILD-TYPE" "HEATR7B2 WILD-TYPE" "HEATR7B2 WILD-TYPE" 
        TCGA-44-3396         TCGA-44-3398         TCGA-44-3918 
"HEATR7B2 WILD-TYPE" "HEATR7B2 WILD-TYPE"   "HEATR7B2 MUTATED" 
        TCGA-44-3919         TCGA-44-4112         TCGA-44-5643 
"HEATR7B2 WILD-TYPE" "HEATR7B2 WILD-TYPE" "HEATR7B2 WILD-TYPE" 
        TCGA-44-5645         TCGA-44-6144         TCGA-44-6145 
"HEATR7B2 WILD-TYPE" "HEATR7B2 WILD-TYPE" "HEATR7B2 WILD-TYPE" 
        TCGA-44-6146         TCGA-44-6147         TCGA-44-6148 
"HEATR7B2 WILD-TYPE" "HEATR7B2 WILD-TYPE" "HEATR7B2 WILD-TYPE" 
        TCGA-44-6774         TCGA-44-6775         TCGA-44-6776 
"HEATR7B2 WILD-TYPE" "HEATR7B2 WILD-TYPE"   "HEATR7B2 MUTATED" 
        TCGA-44-6777         TCGA-44-6778         TCGA-44-6779 
"HEATR7B2 WILD-TYPE" "HEATR7B2 WILD-TYPE" "HEATR7B2 WILD-TYPE" 
        TCGA-49-4486         TCGA-49-4487         TCGA-49-4488 
"HEATR7B2 WILD-TYPE" "HEATR7B2 WILD-TYPE" "HEATR7B2 WILD-TYPE" 
        TCGA-49-4490         TCGA-49-4494         TCGA-49-4501 
"HEATR7B2 WILD-TYPE" "HEATR7B2 WILD-TYPE" "HEATR7B2 WILD-TYPE" 
        TCGA-49-4505         TCGA-49-4506         TCGA-49-4507 
  "HEATR7B2 MUTATED"   "HEATR7B2 MUTATED" "HEATR7B2 WILD-TYPE" 
        TCGA-49-4510         TCGA-49-4512         TCGA-49-4514 
"HEATR7B2 WILD-TYPE" "HEATR7B2 WILD-TYPE" "HEATR7B2 WILD-TYPE" 
        TCGA-49-6742         TCGA-49-6743         TCGA-49-6744 
"HEATR7B2 WILD-TYPE"   "HEATR7B2 MUTATED" "HEATR7B2 WILD-TYPE" 
        TCGA-49-6745         TCGA-50-5044         TCGA-50-5045 
"HEATR7B2 WILD-TYPE"   "HEATR7B2 MUTATED" "HEATR7B2 WILD-TYPE" 
        TCGA-50-5049         TCGA-50-5051         TCGA-50-5055 
"HEATR7B2 WILD-TYPE" "HEATR7B2 WILD-TYPE" "HEATR7B2 WILD-TYPE" 
        TCGA-50-5066         TCGA-50-5068         TCGA-50-5072 
"HEATR7B2 WILD-TYPE" "HEATR7B2 WILD-TYPE" "HEATR7B2 WILD-TYPE" 
        TCGA-50-5930         TCGA-50-5931         TCGA-50-5932 
"HEATR7B2 WILD-TYPE" "HEATR7B2 WILD-TYPE" "HEATR7B2 WILD-TYPE" 
        TCGA-50-5933         TCGA-50-5935         TCGA-50-5936 
"HEATR7B2 WILD-TYPE" "HEATR7B2 WILD-TYPE" "HEATR7B2 WILD-TYPE" 
        TCGA-50-5939         TCGA-50-5941         TCGA-50-5942 
"HEATR7B2 WILD-TYPE" "HEATR7B2 WILD-TYPE" "HEATR7B2 WILD-TYPE" 
        TCGA-50-5944         TCGA-50-5946         TCGA-50-6590 
"HEATR7B2 WILD-TYPE" "HEATR7B2 WILD-TYPE"   "HEATR7B2 MUTATED" 
        TCGA-50-6591         TCGA-50-6592         TCGA-50-6593 
"HEATR7B2 WILD-TYPE" "HEATR7B2 WILD-TYPE" "HEATR7B2 WILD-TYPE" 
        TCGA-50-6594         TCGA-50-6595         TCGA-50-6597 
"HEATR7B2 WILD-TYPE" "HEATR7B2 WILD-TYPE" "HEATR7B2 WILD-TYPE" 
        TCGA-55-1592         TCGA-55-1594         TCGA-55-1595 
"HEATR7B2 WILD-TYPE" "HEATR7B2 WILD-TYPE" "HEATR7B2 WILD-TYPE" 
        TCGA-55-1596         TCGA-55-5899         TCGA-55-6543 
"HEATR7B2 WILD-TYPE" "HEATR7B2 WILD-TYPE" "HEATR7B2 WILD-TYPE" 
        TCGA-55-6642         TCGA-55-6712         TCGA-64-1676 
"HEATR7B2 WILD-TYPE" "HEATR7B2 WILD-TYPE"   "HEATR7B2 MUTATED" 
        TCGA-64-1677         TCGA-64-1678         TCGA-64-1680 
"HEATR7B2 WILD-TYPE" "HEATR7B2 WILD-TYPE" "HEATR7B2 WILD-TYPE" 
        TCGA-64-5774         TCGA-64-5775         TCGA-64-5778 
"HEATR7B2 WILD-TYPE" "HEATR7B2 WILD-TYPE" "HEATR7B2 WILD-TYPE" 
        TCGA-64-5779         TCGA-64-5781         TCGA-64-5815 
"HEATR7B2 WILD-TYPE"   "HEATR7B2 MUTATED" "HEATR7B2 WILD-TYPE" 
        TCGA-67-3770         TCGA-67-3771         TCGA-67-3772 
"HEATR7B2 WILD-TYPE" "HEATR7B2 WILD-TYPE" "HEATR7B2 WILD-TYPE" 
        TCGA-67-3773         TCGA-67-3774         TCGA-67-6215 
"HEATR7B2 WILD-TYPE" "HEATR7B2 WILD-TYPE" "HEATR7B2 WILD-TYPE" 
        TCGA-67-6216         TCGA-67-6217         TCGA-71-6725 
"HEATR7B2 WILD-TYPE" "HEATR7B2 WILD-TYPE" "HEATR7B2 WILD-TYPE" 
        TCGA-73-4658         TCGA-73-4659         TCGA-73-4662 
"HEATR7B2 WILD-TYPE" "HEATR7B2 WILD-TYPE" "HEATR7B2 WILD-TYPE" 
        TCGA-73-4666         TCGA-73-4668         TCGA-73-4670 
"HEATR7B2 WILD-TYPE" "HEATR7B2 WILD-TYPE" "HEATR7B2 WILD-TYPE" 
        TCGA-73-4675         TCGA-73-4676         TCGA-73-4677 
"HEATR7B2 WILD-TYPE" "HEATR7B2 WILD-TYPE"   "HEATR7B2 MUTATED" 
        TCGA-91-6828         TCGA-91-6829         TCGA-91-6831 
"HEATR7B2 WILD-TYPE" "HEATR7B2 WILD-TYPE"   "HEATR7B2 MUTATED" 
        TCGA-91-6835         TCGA-91-6836 
"HEATR7B2 WILD-TYPE" "HEATR7B2 WILD-TYPE" 
        TCGA-05-4249         TCGA-05-4250         TCGA-05-4382 
"HEATR7B2 WILD-TYPE" "HEATR7B2 WILD-TYPE"   "HEATR7B2 MUTATED" 
        TCGA-05-4384         TCGA-05-4390         TCGA-05-4396 
"HEATR7B2 WILD-TYPE"   "HEATR7B2 MUTATED"   "HEATR7B2 MUTATED" 
        TCGA-05-4397         TCGA-05-4398         TCGA-05-4402 
"HEATR7B2 WILD-TYPE" "HEATR7B2 WILD-TYPE" "HEATR7B2 WILD-TYPE" 
        TCGA-05-4405         TCGA-05-4415         TCGA-05-4417 
"HEATR7B2 WILD-TYPE" "HEATR7B2 WILD-TYPE"   "HEATR7B2 MUTATED" 
        TCGA-05-4418         TCGA-05-4420         TCGA-05-4424 
"HEATR7B2 WILD-TYPE" "HEATR7B2 WILD-TYPE"   "HEATR7B2 MUTATED" 
        TCGA-05-4426         TCGA-05-4427         TCGA-05-4430 
"HEATR7B2 WILD-TYPE"   "HEATR7B2 MUTATED" "HEATR7B2 WILD-TYPE" 
        TCGA-05-4432         TCGA-05-4433         TCGA-05-4434 
"HEATR7B2 WILD-TYPE" "HEATR7B2 WILD-TYPE" "HEATR7B2 WILD-TYPE" 
        TCGA-05-5420         TCGA-05-5423         TCGA-05-5425 
"HEATR7B2 WILD-TYPE" "HEATR7B2 WILD-TYPE" "HEATR7B2 WILD-TYPE" 
        TCGA-05-5429         TCGA-05-5715         TCGA-35-3615 
"HEATR7B2 WILD-TYPE" "HEATR7B2 WILD-TYPE" "HEATR7B2 WILD-TYPE" 
        TCGA-35-4122         TCGA-35-4123         TCGA-35-5375 
"HEATR7B2 WILD-TYPE" "HEATR7B2 WILD-TYPE" "HEATR7B2 WILD-TYPE" 
        TCGA-38-4625         TCGA-38-4626         TCGA-38-4627 
"HEATR7B2 WILD-TYPE" "HEATR7B2 WILD-TYPE" "HEATR7B2 WILD-TYPE" 
        TCGA-38-4628         TCGA-38-4629         TCGA-38-4630 
"HEATR7B2 WILD-TYPE"   "HEATR7B2 MUTATED" "HEATR7B2 WILD-TYPE" 
        TCGA-38-4631         TCGA-38-4632         TCGA-38-6178 
"HEATR7B2 WILD-TYPE" "HEATR7B2 WILD-TYPE" "HEATR7B2 WILD-TYPE" 
        TCGA-44-2655         TCGA-44-2656         TCGA-44-2657 
"HEATR7B2 WILD-TYPE" "HEATR7B2 WILD-TYPE" "HEATR7B2 WILD-TYPE" 
        TCGA-44-2659         TCGA-44-2661         TCGA-44-2662 
"HEATR7B2 WILD-TYPE" "HEATR7B2 WILD-TYPE" "HEATR7B2 WILD-TYPE" 
        TCGA-44-2665         TCGA-44-2666         TCGA-44-2668 
"HEATR7B2 WILD-TYPE" "HEATR7B2 WILD-TYPE" "HEATR7B2 WILD-TYPE" 
        TCGA-44-3396         TCGA-44-3398         TCGA-44-3918 
"HEATR7B2 WILD-TYPE" "HEATR7B2 WILD-TYPE"   "HEATR7B2 MUTATED" 
        TCGA-44-3919         TCGA-44-4112         TCGA-44-5643 
"HEATR7B2 WILD-TYPE" "HEATR7B2 WILD-TYPE" "HEATR7B2 WILD-TYPE" 
        TCGA-44-5645         TCGA-44-6144         TCGA-44-6145 
"HEATR7B2 WILD-TYPE" "HEATR7B2 WILD-TYPE" "HEATR7B2 WILD-TYPE" 
        TCGA-44-6146         TCGA-44-6147         TCGA-44-6148 
"HEATR7B2 WILD-TYPE" "HEATR7B2 WILD-TYPE" "HEATR7B2 WILD-TYPE" 
        TCGA-44-6774         TCGA-44-6775         TCGA-44-6776 
"HEATR7B2 WILD-TYPE" "HEATR7B2 WILD-TYPE"   "HEATR7B2 MUTATED" 
        TCGA-44-6777         TCGA-44-6778         TCGA-44-6779 
"HEATR7B2 WILD-TYPE" "HEATR7B2 WILD-TYPE" "HEATR7B2 WILD-TYPE" 
        TCGA-49-4486         TCGA-49-4487         TCGA-49-4488 
"HEATR7B2 WILD-TYPE" "HEATR7B2 WILD-TYPE" "HEATR7B2 WILD-TYPE" 
        TCGA-49-4490         TCGA-49-4494         TCGA-49-4501 
"HEATR7B2 WILD-TYPE" "HEATR7B2 WILD-TYPE" "HEATR7B2 WILD-TYPE" 
        TCGA-49-4505         TCGA-49-4506         TCGA-49-4507 
  "HEATR7B2 MUTATED"   "HEATR7B2 MUTATED" "HEATR7B2 WILD-TYPE" 
        TCGA-49-4510         TCGA-49-4512         TCGA-49-4514 
"HEATR7B2 WILD-TYPE" "HEATR7B2 WILD-TYPE" "HEATR7B2 WILD-TYPE" 
        TCGA-49-6742         TCGA-49-6743         TCGA-49-6744 
"HEATR7B2 WILD-TYPE"   "HEATR7B2 MUTATED" "HEATR7B2 WILD-TYPE" 
        TCGA-49-6745         TCGA-50-5044         TCGA-50-5045 
"HEATR7B2 WILD-TYPE"   "HEATR7B2 MUTATED" "HEATR7B2 WILD-TYPE" 
        TCGA-50-5049         TCGA-50-5051         TCGA-50-5055 
"HEATR7B2 WILD-TYPE" "HEATR7B2 WILD-TYPE" "HEATR7B2 WILD-TYPE" 
        TCGA-50-5066         TCGA-50-5068         TCGA-50-5072 
"HEATR7B2 WILD-TYPE" "HEATR7B2 WILD-TYPE" "HEATR7B2 WILD-TYPE" 
        TCGA-50-5930         TCGA-50-5931         TCGA-50-5932 
"HEATR7B2 WILD-TYPE" "HEATR7B2 WILD-TYPE" "HEATR7B2 WILD-TYPE" 
        TCGA-50-5933         TCGA-50-5935         TCGA-50-5936 
"HEATR7B2 WILD-TYPE" "HEATR7B2 WILD-TYPE" "HEATR7B2 WILD-TYPE" 
        TCGA-50-5939         TCGA-50-5941         TCGA-50-5942 
"HEATR7B2 WILD-TYPE" "HEATR7B2 WILD-TYPE" "HEATR7B2 WILD-TYPE" 
        TCGA-50-5944         TCGA-50-5946         TCGA-50-6590 
"HEATR7B2 WILD-TYPE" "HEATR7B2 WILD-TYPE"   "HEATR7B2 MUTATED" 
        TCGA-50-6591         TCGA-50-6592         TCGA-50-6593 
"HEATR7B2 WILD-TYPE" "HEATR7B2 WILD-TYPE" "HEATR7B2 WILD-TYPE" 
        TCGA-50-6594         TCGA-50-6595         TCGA-50-6597 
"HEATR7B2 WILD-TYPE" "HEATR7B2 WILD-TYPE" "HEATR7B2 WILD-TYPE" 
        TCGA-55-1592         TCGA-55-1594         TCGA-55-1595 
"HEATR7B2 WILD-TYPE" "HEATR7B2 WILD-TYPE" "HEATR7B2 WILD-TYPE" 
        TCGA-55-1596         TCGA-55-5899         TCGA-55-6543 
"HEATR7B2 WILD-TYPE" "HEATR7B2 WILD-TYPE" "HEATR7B2 WILD-TYPE" 
        TCGA-55-6642         TCGA-55-6712         TCGA-64-1676 
"HEATR7B2 WILD-TYPE" "HEATR7B2 WILD-TYPE"   "HEATR7B2 MUTATED" 
        TCGA-64-1677         TCGA-64-1678         TCGA-64-1680 
"HEATR7B2 WILD-TYPE" "HEATR7B2 WILD-TYPE" "HEATR7B2 WILD-TYPE" 
        TCGA-64-5774         TCGA-64-5775         TCGA-64-5778 
"HEATR7B2 WILD-TYPE" "HEATR7B2 WILD-TYPE" "HEATR7B2 WILD-TYPE" 
        TCGA-64-5779         TCGA-64-5781         TCGA-64-5815 
"HEATR7B2 WILD-TYPE"   "HEATR7B2 MUTATED" "HEATR7B2 WILD-TYPE" 
        TCGA-67-3770         TCGA-67-3771         TCGA-67-3772 
"HEATR7B2 WILD-TYPE" "HEATR7B2 WILD-TYPE" "HEATR7B2 WILD-TYPE" 
        TCGA-67-3773         TCGA-67-3774         TCGA-67-6215 
"HEATR7B2 WILD-TYPE" "HEATR7B2 WILD-TYPE" "HEATR7B2 WILD-TYPE" 
        TCGA-67-6216         TCGA-67-6217         TCGA-71-6725 
"HEATR7B2 WILD-TYPE" "HEATR7B2 WILD-TYPE" "HEATR7B2 WILD-TYPE" 
        TCGA-73-4658         TCGA-73-4659         TCGA-73-4662 
"HEATR7B2 WILD-TYPE" "HEATR7B2 WILD-TYPE" "HEATR7B2 WILD-TYPE" 
        TCGA-73-4666         TCGA-73-4668         TCGA-73-4670 
"HEATR7B2 WILD-TYPE" "HEATR7B2 WILD-TYPE" "HEATR7B2 WILD-TYPE" 
        TCGA-73-4675         TCGA-73-4676         TCGA-73-4677 
"HEATR7B2 WILD-TYPE" "HEATR7B2 WILD-TYPE"   "HEATR7B2 MUTATED" 
        TCGA-91-6828         TCGA-91-6829         TCGA-91-6831 
"HEATR7B2 WILD-TYPE" "HEATR7B2 WILD-TYPE"   "HEATR7B2 MUTATED" 
        TCGA-91-6835         TCGA-91-6836 
"HEATR7B2 WILD-TYPE" "HEATR7B2 WILD-TYPE" 
[1] "hr=" "1.1"
D40V2, continuous
D40V3, binary
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  HEATR7B2 MUTATED     11    9
  HEATR7B2 WILD-TYPE   82   70
        clus
vv       HEATR7B2 MUTATED HEATR7B2 WILD-TYPE
  FEMALE               11                 82
  MALE                  9                 70
D40V4, continuous
D40V5, multiclass
D40V6, multiclass
    clus
vv   HEATR7B2 MUTATED HEATR7B2 WILD-TYPE
  T1                4                 37
  T2               12                 96
  T3                2                 12
  T4                2                  6
D40V7, multiclass
       clus
vv      HEATR7B2 MUTATED HEATR7B2 WILD-TYPE
  N0                  14                 81
  N1                   5                 32
  N2+N3                1                 34
D40V8, multiclass
    clus
vv   HEATR7B2 MUTATED HEATR7B2 WILD-TYPE
  M0               17                120
  M1                0                  9
  MX                3                 19
D40V9, multiclass
     clus
vv    HEATR7B2 MUTATED HEATR7B2 WILD-TYPE
  I                 12                 76
  II                 5                 28
  III                3                 36
  IV                 0                  9
D40V10, binary
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  HEATR7B2 MUTATED      0   20
  HEATR7B2 WILD-TYPE   16  136
     clus
vv    HEATR7B2 MUTATED HEATR7B2 WILD-TYPE
  NO                 0                 16
  YES               20                136
D40V11, continuous
D40V12, continuous
D40V13, multiclass
                                             clus
vv                                            HEATR7B2 MUTATED
  CURRENT REFORMED SMOKER FOR < OR = 15 YEARS               12
  CURRENT REFORMED SMOKER FOR > 15 YEARS                     4
  CURRENT SMOKER                                             3
  LIFELONG NON-SMOKER                                        0
                                             clus
vv                                            HEATR7B2 WILD-TYPE
  CURRENT REFORMED SMOKER FOR < OR = 15 YEARS                 50
  CURRENT REFORMED SMOKER FOR > 15 YEARS                      42
  CURRENT SMOKER                                              25
  LIFELONG NON-SMOKER                                         24
D40V14, continuous

Clustering(41) Variable = SPANXN2 MUTATION ANALYSIS
D41V1, survival
                   sevent
clus2                0  1
  SPANXN2 MUTATED    3  3
  SPANXN2 WILD-TYPE 96 47
  SPANXN2 MUTATED SPANXN2 WILD-TYPE 
                6               143 
  SPANXN2 MUTATED SPANXN2 WILD-TYPE 
                3                47 
$`SPANXN2 MUTATED`
TCGA-05-4390 TCGA-05-4396 TCGA-05-4397 TCGA-05-4427 TCGA-44-3918 TCGA-55-1592 
       37.02         9.96        24.03        26.01         6.44        23.05 

$`SPANXN2 WILD-TYPE`
TCGA-05-4249 TCGA-05-4250 TCGA-05-4382 TCGA-05-4384 TCGA-05-4398 TCGA-05-4402 
       38.07         3.98        19.92        14.01        47.05         8.02 
TCGA-05-4405 TCGA-05-4415 TCGA-05-4417 TCGA-05-4418 TCGA-05-4420 TCGA-05-4424 
       20.05         2.96        14.93         8.98        29.95        30.02 
TCGA-05-4426 TCGA-05-4430 TCGA-05-4432 TCGA-05-4433 TCGA-05-4434 TCGA-05-5420 
       26.01        25.02        25.02        24.00        15.02         1.02 
TCGA-05-5423 TCGA-05-5425 TCGA-05-5429 TCGA-05-5715 TCGA-35-3615 TCGA-35-4122 
        4.96         2.96         0.99         2.04         0.46         7.36 
TCGA-35-4123 TCGA-35-5375 TCGA-38-4625 TCGA-38-4626 TCGA-38-4627 TCGA-38-4628 
        5.95         8.68        47.61        85.32        37.71        49.02 
TCGA-38-4629 TCGA-38-4630 TCGA-38-4631 TCGA-38-4632 TCGA-38-6178 TCGA-44-2655 
       28.37        35.28        11.64        44.61         5.19        18.87 
TCGA-44-2656 TCGA-44-2657 TCGA-44-2659 TCGA-44-2661 TCGA-44-2662 TCGA-44-2665 
       19.10        13.15        17.39         3.39        15.78        13.15 
TCGA-44-2666 TCGA-44-2668 TCGA-44-3396 TCGA-44-3398 TCGA-44-3919 TCGA-44-4112 
        3.19         8.09        10.22         8.32         6.21         4.60 
TCGA-44-5643 TCGA-44-5645 TCGA-44-6144 TCGA-44-6145 TCGA-44-6146 TCGA-44-6147 
        3.48         6.84         0.30         3.35         9.93         7.76 
TCGA-44-6148 TCGA-44-6774 TCGA-44-6775 TCGA-44-6776 TCGA-44-6777 TCGA-44-6778 
        3.12         5.42         2.70        63.72        32.45        36.49 
TCGA-44-6779 TCGA-49-4486 TCGA-49-4487 TCGA-49-4488 TCGA-49-4490 TCGA-49-4494 
       16.41        76.21        28.11        28.57        12.66        35.54 
TCGA-49-4501 TCGA-49-4505 TCGA-49-4506 TCGA-49-4507 TCGA-49-4510 TCGA-49-4512 
       46.72        14.07        32.84         8.81        29.46        29.75 
TCGA-49-4514 TCGA-49-6742 TCGA-49-6743 TCGA-49-6744 TCGA-49-6745 TCGA-50-5044 
       43.20        15.02        12.13        12.99         4.93        20.48 
TCGA-50-5045 TCGA-50-5049 TCGA-50-5051 TCGA-50-5055 TCGA-50-5066 TCGA-50-5068 
       71.47        48.82        14.96        25.81         9.76        49.28 
TCGA-50-5072 TCGA-50-5930 TCGA-50-5931 TCGA-50-5932 TCGA-50-5933 TCGA-50-5935 
        8.05         9.27         8.78        35.87        77.88        21.47 
TCGA-50-5936 TCGA-50-5939 TCGA-50-5941 TCGA-50-5942 TCGA-50-5944 TCGA-50-5946 
        8.45        15.12         9.37         4.44        12.26        11.47 
TCGA-50-6590 TCGA-50-6591 TCGA-50-6592 TCGA-50-6593 TCGA-50-6594 TCGA-50-6595 
       42.31         3.88        25.51        11.05        12.16         6.21 
TCGA-50-6597 TCGA-55-1594 TCGA-55-1595 TCGA-55-1596 TCGA-55-5899 TCGA-55-6543 
       33.37        38.73        48.62        45.17         2.86         0.07 
TCGA-55-6642 TCGA-55-6712 TCGA-64-1676 TCGA-64-1677 TCGA-64-1678 TCGA-64-1680 
       32.61         0.79        56.81        20.65        39.09        37.02 
TCGA-64-5774 TCGA-64-5775 TCGA-64-5778 TCGA-64-5779 TCGA-64-5781 TCGA-64-5815 
       83.84         0.10        30.44        16.67        39.52         7.33 
TCGA-67-3770 TCGA-67-3771 TCGA-67-3772 TCGA-67-3773 TCGA-67-3774 TCGA-67-6215 
        0.99         1.97         0.59         2.04         0.59         0.89 
TCGA-67-6216 TCGA-67-6217 TCGA-71-6725 TCGA-73-4658 TCGA-73-4659 TCGA-73-4662 
        0.69        13.87         2.01        52.57        23.38        29.95 
TCGA-73-4666 TCGA-73-4668 TCGA-73-4670 TCGA-73-4675 TCGA-73-4676 TCGA-73-4677 
       20.28        15.35         0.46         1.32         4.01         1.25 
TCGA-91-6828 TCGA-91-6829 TCGA-91-6831 TCGA-91-6835 TCGA-91-6836 
        1.22        41.33         1.28         1.15         0.36 

  SPANXN2 MUTATED SPANXN2 WILD-TYPE 
             6.44              0.07 
  SPANXN2 MUTATED SPANXN2 WILD-TYPE 
            37.02             85.32 
  SPANXN2 MUTATED SPANXN2 WILD-TYPE 
            23.54             13.15 
[1] "6.4 - 37.0 (23.5)" "0.1 - 85.3 (13.2)"
       TCGA-05-4249        TCGA-05-4250        TCGA-05-4382        TCGA-05-4384 
"SPANXN2 WILD-TYPE" "SPANXN2 WILD-TYPE" "SPANXN2 WILD-TYPE" "SPANXN2 WILD-TYPE" 
       TCGA-05-4390        TCGA-05-4396        TCGA-05-4397        TCGA-05-4398 
  "SPANXN2 MUTATED"   "SPANXN2 MUTATED"   "SPANXN2 MUTATED" "SPANXN2 WILD-TYPE" 
       TCGA-05-4402        TCGA-05-4405        TCGA-05-4415        TCGA-05-4417 
"SPANXN2 WILD-TYPE" "SPANXN2 WILD-TYPE" "SPANXN2 WILD-TYPE" "SPANXN2 WILD-TYPE" 
       TCGA-05-4418        TCGA-05-4420        TCGA-05-4424        TCGA-05-4426 
"SPANXN2 WILD-TYPE" "SPANXN2 WILD-TYPE" "SPANXN2 WILD-TYPE" "SPANXN2 WILD-TYPE" 
       TCGA-05-4427        TCGA-05-4430        TCGA-05-4432        TCGA-05-4433 
  "SPANXN2 MUTATED" "SPANXN2 WILD-TYPE" "SPANXN2 WILD-TYPE" "SPANXN2 WILD-TYPE" 
       TCGA-05-4434        TCGA-05-5420        TCGA-05-5423        TCGA-05-5425 
"SPANXN2 WILD-TYPE" "SPANXN2 WILD-TYPE" "SPANXN2 WILD-TYPE" "SPANXN2 WILD-TYPE" 
       TCGA-05-5429        TCGA-05-5715        TCGA-35-3615        TCGA-35-4122 
"SPANXN2 WILD-TYPE" "SPANXN2 WILD-TYPE" "SPANXN2 WILD-TYPE" "SPANXN2 WILD-TYPE" 
       TCGA-35-4123        TCGA-35-5375        TCGA-38-4625        TCGA-38-4626 
"SPANXN2 WILD-TYPE" "SPANXN2 WILD-TYPE" "SPANXN2 WILD-TYPE" "SPANXN2 WILD-TYPE" 
       TCGA-38-4627        TCGA-38-4628        TCGA-38-4629        TCGA-38-4630 
"SPANXN2 WILD-TYPE" "SPANXN2 WILD-TYPE" "SPANXN2 WILD-TYPE" "SPANXN2 WILD-TYPE" 
       TCGA-38-4631        TCGA-38-4632        TCGA-38-6178        TCGA-44-2655 
"SPANXN2 WILD-TYPE" "SPANXN2 WILD-TYPE" "SPANXN2 WILD-TYPE" "SPANXN2 WILD-TYPE" 
       TCGA-44-2656        TCGA-44-2657        TCGA-44-2659        TCGA-44-2661 
"SPANXN2 WILD-TYPE" "SPANXN2 WILD-TYPE" "SPANXN2 WILD-TYPE" "SPANXN2 WILD-TYPE" 
       TCGA-44-2662        TCGA-44-2665        TCGA-44-2666        TCGA-44-2668 
"SPANXN2 WILD-TYPE" "SPANXN2 WILD-TYPE" "SPANXN2 WILD-TYPE" "SPANXN2 WILD-TYPE" 
       TCGA-44-3396        TCGA-44-3398        TCGA-44-3918        TCGA-44-3919 
"SPANXN2 WILD-TYPE" "SPANXN2 WILD-TYPE"   "SPANXN2 MUTATED" "SPANXN2 WILD-TYPE" 
       TCGA-44-4112        TCGA-44-5643        TCGA-44-5645        TCGA-44-6144 
"SPANXN2 WILD-TYPE" "SPANXN2 WILD-TYPE" "SPANXN2 WILD-TYPE" "SPANXN2 WILD-TYPE" 
       TCGA-44-6145        TCGA-44-6146        TCGA-44-6147        TCGA-44-6148 
"SPANXN2 WILD-TYPE" "SPANXN2 WILD-TYPE" "SPANXN2 WILD-TYPE" "SPANXN2 WILD-TYPE" 
       TCGA-44-6774        TCGA-44-6775        TCGA-44-6776        TCGA-44-6777 
"SPANXN2 WILD-TYPE" "SPANXN2 WILD-TYPE" "SPANXN2 WILD-TYPE" "SPANXN2 WILD-TYPE" 
       TCGA-44-6778        TCGA-44-6779        TCGA-49-4486        TCGA-49-4487 
"SPANXN2 WILD-TYPE" "SPANXN2 WILD-TYPE" "SPANXN2 WILD-TYPE" "SPANXN2 WILD-TYPE" 
       TCGA-49-4488        TCGA-49-4490        TCGA-49-4494        TCGA-49-4501 
"SPANXN2 WILD-TYPE" "SPANXN2 WILD-TYPE" "SPANXN2 WILD-TYPE" "SPANXN2 WILD-TYPE" 
       TCGA-49-4505        TCGA-49-4506        TCGA-49-4507        TCGA-49-4510 
"SPANXN2 WILD-TYPE" "SPANXN2 WILD-TYPE" "SPANXN2 WILD-TYPE" "SPANXN2 WILD-TYPE" 
       TCGA-49-4512        TCGA-49-4514        TCGA-49-6742        TCGA-49-6743 
"SPANXN2 WILD-TYPE" "SPANXN2 WILD-TYPE" "SPANXN2 WILD-TYPE" "SPANXN2 WILD-TYPE" 
       TCGA-49-6744        TCGA-49-6745        TCGA-50-5044        TCGA-50-5045 
"SPANXN2 WILD-TYPE" "SPANXN2 WILD-TYPE" "SPANXN2 WILD-TYPE" "SPANXN2 WILD-TYPE" 
       TCGA-50-5049        TCGA-50-5051        TCGA-50-5055        TCGA-50-5066 
"SPANXN2 WILD-TYPE" "SPANXN2 WILD-TYPE" "SPANXN2 WILD-TYPE" "SPANXN2 WILD-TYPE" 
       TCGA-50-5068        TCGA-50-5072        TCGA-50-5930        TCGA-50-5931 
"SPANXN2 WILD-TYPE" "SPANXN2 WILD-TYPE" "SPANXN2 WILD-TYPE" "SPANXN2 WILD-TYPE" 
       TCGA-50-5932        TCGA-50-5933        TCGA-50-5935        TCGA-50-5936 
"SPANXN2 WILD-TYPE" "SPANXN2 WILD-TYPE" "SPANXN2 WILD-TYPE" "SPANXN2 WILD-TYPE" 
       TCGA-50-5939        TCGA-50-5941        TCGA-50-5942        TCGA-50-5944 
"SPANXN2 WILD-TYPE" "SPANXN2 WILD-TYPE" "SPANXN2 WILD-TYPE" "SPANXN2 WILD-TYPE" 
       TCGA-50-5946        TCGA-50-6590        TCGA-50-6591        TCGA-50-6592 
"SPANXN2 WILD-TYPE" "SPANXN2 WILD-TYPE" "SPANXN2 WILD-TYPE" "SPANXN2 WILD-TYPE" 
       TCGA-50-6593        TCGA-50-6594        TCGA-50-6595        TCGA-50-6597 
"SPANXN2 WILD-TYPE" "SPANXN2 WILD-TYPE" "SPANXN2 WILD-TYPE" "SPANXN2 WILD-TYPE" 
       TCGA-55-1592        TCGA-55-1594        TCGA-55-1595        TCGA-55-1596 
  "SPANXN2 MUTATED" "SPANXN2 WILD-TYPE" "SPANXN2 WILD-TYPE" "SPANXN2 WILD-TYPE" 
       TCGA-55-5899        TCGA-55-6543        TCGA-55-6642        TCGA-55-6712 
"SPANXN2 WILD-TYPE" "SPANXN2 WILD-TYPE" "SPANXN2 WILD-TYPE" "SPANXN2 WILD-TYPE" 
       TCGA-64-1676        TCGA-64-1677        TCGA-64-1678        TCGA-64-1680 
"SPANXN2 WILD-TYPE" "SPANXN2 WILD-TYPE" "SPANXN2 WILD-TYPE" "SPANXN2 WILD-TYPE" 
       TCGA-64-5774        TCGA-64-5775        TCGA-64-5778        TCGA-64-5779 
"SPANXN2 WILD-TYPE" "SPANXN2 WILD-TYPE" "SPANXN2 WILD-TYPE" "SPANXN2 WILD-TYPE" 
       TCGA-64-5781        TCGA-64-5815        TCGA-67-3770        TCGA-67-3771 
"SPANXN2 WILD-TYPE" "SPANXN2 WILD-TYPE" "SPANXN2 WILD-TYPE" "SPANXN2 WILD-TYPE" 
       TCGA-67-3772        TCGA-67-3773        TCGA-67-3774        TCGA-67-6215 
"SPANXN2 WILD-TYPE" "SPANXN2 WILD-TYPE" "SPANXN2 WILD-TYPE" "SPANXN2 WILD-TYPE" 
       TCGA-67-6216        TCGA-67-6217        TCGA-71-6725        TCGA-73-4658 
"SPANXN2 WILD-TYPE" "SPANXN2 WILD-TYPE" "SPANXN2 WILD-TYPE" "SPANXN2 WILD-TYPE" 
       TCGA-73-4659        TCGA-73-4662        TCGA-73-4666        TCGA-73-4668 
"SPANXN2 WILD-TYPE" "SPANXN2 WILD-TYPE" "SPANXN2 WILD-TYPE" "SPANXN2 WILD-TYPE" 
       TCGA-73-4670        TCGA-73-4675        TCGA-73-4676        TCGA-73-4677 
"SPANXN2 WILD-TYPE" "SPANXN2 WILD-TYPE" "SPANXN2 WILD-TYPE" "SPANXN2 WILD-TYPE" 
       TCGA-91-6828        TCGA-91-6829        TCGA-91-6831        TCGA-91-6835 
"SPANXN2 WILD-TYPE" "SPANXN2 WILD-TYPE" "SPANXN2 WILD-TYPE" "SPANXN2 WILD-TYPE" 
       TCGA-91-6836 
"SPANXN2 WILD-TYPE" 
       TCGA-05-4249        TCGA-05-4250        TCGA-05-4382        TCGA-05-4384 
"SPANXN2 WILD-TYPE" "SPANXN2 WILD-TYPE" "SPANXN2 WILD-TYPE" "SPANXN2 WILD-TYPE" 
       TCGA-05-4390        TCGA-05-4396        TCGA-05-4397        TCGA-05-4398 
  "SPANXN2 MUTATED"   "SPANXN2 MUTATED"   "SPANXN2 MUTATED" "SPANXN2 WILD-TYPE" 
       TCGA-05-4402        TCGA-05-4405        TCGA-05-4415        TCGA-05-4417 
"SPANXN2 WILD-TYPE" "SPANXN2 WILD-TYPE" "SPANXN2 WILD-TYPE" "SPANXN2 WILD-TYPE" 
       TCGA-05-4418        TCGA-05-4420        TCGA-05-4424        TCGA-05-4426 
"SPANXN2 WILD-TYPE" "SPANXN2 WILD-TYPE" "SPANXN2 WILD-TYPE" "SPANXN2 WILD-TYPE" 
       TCGA-05-4427        TCGA-05-4430        TCGA-05-4432        TCGA-05-4433 
  "SPANXN2 MUTATED" "SPANXN2 WILD-TYPE" "SPANXN2 WILD-TYPE" "SPANXN2 WILD-TYPE" 
       TCGA-05-4434        TCGA-05-5420        TCGA-05-5423        TCGA-05-5425 
"SPANXN2 WILD-TYPE" "SPANXN2 WILD-TYPE" "SPANXN2 WILD-TYPE" "SPANXN2 WILD-TYPE" 
       TCGA-05-5429        TCGA-05-5715        TCGA-35-3615        TCGA-35-4122 
"SPANXN2 WILD-TYPE" "SPANXN2 WILD-TYPE" "SPANXN2 WILD-TYPE" "SPANXN2 WILD-TYPE" 
       TCGA-35-4123        TCGA-35-5375        TCGA-38-4625        TCGA-38-4626 
"SPANXN2 WILD-TYPE" "SPANXN2 WILD-TYPE" "SPANXN2 WILD-TYPE" "SPANXN2 WILD-TYPE" 
       TCGA-38-4627        TCGA-38-4628        TCGA-38-4629        TCGA-38-4630 
"SPANXN2 WILD-TYPE" "SPANXN2 WILD-TYPE" "SPANXN2 WILD-TYPE" "SPANXN2 WILD-TYPE" 
       TCGA-38-4631        TCGA-38-4632        TCGA-38-6178        TCGA-44-2655 
"SPANXN2 WILD-TYPE" "SPANXN2 WILD-TYPE" "SPANXN2 WILD-TYPE" "SPANXN2 WILD-TYPE" 
       TCGA-44-2656        TCGA-44-2657        TCGA-44-2659        TCGA-44-2661 
"SPANXN2 WILD-TYPE" "SPANXN2 WILD-TYPE" "SPANXN2 WILD-TYPE" "SPANXN2 WILD-TYPE" 
       TCGA-44-2662        TCGA-44-2665        TCGA-44-2666        TCGA-44-2668 
"SPANXN2 WILD-TYPE" "SPANXN2 WILD-TYPE" "SPANXN2 WILD-TYPE" "SPANXN2 WILD-TYPE" 
       TCGA-44-3396        TCGA-44-3398        TCGA-44-3918        TCGA-44-3919 
"SPANXN2 WILD-TYPE" "SPANXN2 WILD-TYPE"   "SPANXN2 MUTATED" "SPANXN2 WILD-TYPE" 
       TCGA-44-4112        TCGA-44-5643        TCGA-44-5645        TCGA-44-6144 
"SPANXN2 WILD-TYPE" "SPANXN2 WILD-TYPE" "SPANXN2 WILD-TYPE" "SPANXN2 WILD-TYPE" 
       TCGA-44-6145        TCGA-44-6146        TCGA-44-6147        TCGA-44-6148 
"SPANXN2 WILD-TYPE" "SPANXN2 WILD-TYPE" "SPANXN2 WILD-TYPE" "SPANXN2 WILD-TYPE" 
       TCGA-44-6774        TCGA-44-6775        TCGA-44-6776        TCGA-44-6777 
"SPANXN2 WILD-TYPE" "SPANXN2 WILD-TYPE" "SPANXN2 WILD-TYPE" "SPANXN2 WILD-TYPE" 
       TCGA-44-6778        TCGA-44-6779        TCGA-49-4486        TCGA-49-4487 
"SPANXN2 WILD-TYPE" "SPANXN2 WILD-TYPE" "SPANXN2 WILD-TYPE" "SPANXN2 WILD-TYPE" 
       TCGA-49-4488        TCGA-49-4490        TCGA-49-4494        TCGA-49-4501 
"SPANXN2 WILD-TYPE" "SPANXN2 WILD-TYPE" "SPANXN2 WILD-TYPE" "SPANXN2 WILD-TYPE" 
       TCGA-49-4505        TCGA-49-4506        TCGA-49-4507        TCGA-49-4510 
"SPANXN2 WILD-TYPE" "SPANXN2 WILD-TYPE" "SPANXN2 WILD-TYPE" "SPANXN2 WILD-TYPE" 
       TCGA-49-4512        TCGA-49-4514        TCGA-49-6742        TCGA-49-6743 
"SPANXN2 WILD-TYPE" "SPANXN2 WILD-TYPE" "SPANXN2 WILD-TYPE" "SPANXN2 WILD-TYPE" 
       TCGA-49-6744        TCGA-49-6745        TCGA-50-5044        TCGA-50-5045 
"SPANXN2 WILD-TYPE" "SPANXN2 WILD-TYPE" "SPANXN2 WILD-TYPE" "SPANXN2 WILD-TYPE" 
       TCGA-50-5049        TCGA-50-5051        TCGA-50-5055        TCGA-50-5066 
"SPANXN2 WILD-TYPE" "SPANXN2 WILD-TYPE" "SPANXN2 WILD-TYPE" "SPANXN2 WILD-TYPE" 
       TCGA-50-5068        TCGA-50-5072        TCGA-50-5930        TCGA-50-5931 
"SPANXN2 WILD-TYPE" "SPANXN2 WILD-TYPE" "SPANXN2 WILD-TYPE" "SPANXN2 WILD-TYPE" 
       TCGA-50-5932        TCGA-50-5933        TCGA-50-5935        TCGA-50-5936 
"SPANXN2 WILD-TYPE" "SPANXN2 WILD-TYPE" "SPANXN2 WILD-TYPE" "SPANXN2 WILD-TYPE" 
       TCGA-50-5939        TCGA-50-5941        TCGA-50-5942        TCGA-50-5944 
"SPANXN2 WILD-TYPE" "SPANXN2 WILD-TYPE" "SPANXN2 WILD-TYPE" "SPANXN2 WILD-TYPE" 
       TCGA-50-5946        TCGA-50-6590        TCGA-50-6591        TCGA-50-6592 
"SPANXN2 WILD-TYPE" "SPANXN2 WILD-TYPE" "SPANXN2 WILD-TYPE" "SPANXN2 WILD-TYPE" 
       TCGA-50-6593        TCGA-50-6594        TCGA-50-6595        TCGA-50-6597 
"SPANXN2 WILD-TYPE" "SPANXN2 WILD-TYPE" "SPANXN2 WILD-TYPE" "SPANXN2 WILD-TYPE" 
       TCGA-55-1592        TCGA-55-1594        TCGA-55-1595        TCGA-55-1596 
  "SPANXN2 MUTATED" "SPANXN2 WILD-TYPE" "SPANXN2 WILD-TYPE" "SPANXN2 WILD-TYPE" 
       TCGA-55-5899        TCGA-55-6543        TCGA-55-6642        TCGA-55-6712 
"SPANXN2 WILD-TYPE" "SPANXN2 WILD-TYPE" "SPANXN2 WILD-TYPE" "SPANXN2 WILD-TYPE" 
       TCGA-64-1676        TCGA-64-1677        TCGA-64-1678        TCGA-64-1680 
"SPANXN2 WILD-TYPE" "SPANXN2 WILD-TYPE" "SPANXN2 WILD-TYPE" "SPANXN2 WILD-TYPE" 
       TCGA-64-5774        TCGA-64-5775        TCGA-64-5778        TCGA-64-5779 
"SPANXN2 WILD-TYPE" "SPANXN2 WILD-TYPE" "SPANXN2 WILD-TYPE" "SPANXN2 WILD-TYPE" 
       TCGA-64-5781        TCGA-64-5815        TCGA-67-3770        TCGA-67-3771 
"SPANXN2 WILD-TYPE" "SPANXN2 WILD-TYPE" "SPANXN2 WILD-TYPE" "SPANXN2 WILD-TYPE" 
       TCGA-67-3772        TCGA-67-3773        TCGA-67-3774        TCGA-67-6215 
"SPANXN2 WILD-TYPE" "SPANXN2 WILD-TYPE" "SPANXN2 WILD-TYPE" "SPANXN2 WILD-TYPE" 
       TCGA-67-6216        TCGA-67-6217        TCGA-71-6725        TCGA-73-4658 
"SPANXN2 WILD-TYPE" "SPANXN2 WILD-TYPE" "SPANXN2 WILD-TYPE" "SPANXN2 WILD-TYPE" 
       TCGA-73-4659        TCGA-73-4662        TCGA-73-4666        TCGA-73-4668 
"SPANXN2 WILD-TYPE" "SPANXN2 WILD-TYPE" "SPANXN2 WILD-TYPE" "SPANXN2 WILD-TYPE" 
       TCGA-73-4670        TCGA-73-4675        TCGA-73-4676        TCGA-73-4677 
"SPANXN2 WILD-TYPE" "SPANXN2 WILD-TYPE" "SPANXN2 WILD-TYPE" "SPANXN2 WILD-TYPE" 
       TCGA-91-6828        TCGA-91-6829        TCGA-91-6831        TCGA-91-6835 
"SPANXN2 WILD-TYPE" "SPANXN2 WILD-TYPE" "SPANXN2 WILD-TYPE" "SPANXN2 WILD-TYPE" 
       TCGA-91-6836 
"SPANXN2 WILD-TYPE" 
       TCGA-05-4249        TCGA-05-4250        TCGA-05-4382        TCGA-05-4384 
"SPANXN2 WILD-TYPE" "SPANXN2 WILD-TYPE" "SPANXN2 WILD-TYPE" "SPANXN2 WILD-TYPE" 
       TCGA-05-4390        TCGA-05-4396        TCGA-05-4397        TCGA-05-4398 
  "SPANXN2 MUTATED"   "SPANXN2 MUTATED"   "SPANXN2 MUTATED" "SPANXN2 WILD-TYPE" 
       TCGA-05-4402        TCGA-05-4405        TCGA-05-4415        TCGA-05-4417 
"SPANXN2 WILD-TYPE" "SPANXN2 WILD-TYPE" "SPANXN2 WILD-TYPE" "SPANXN2 WILD-TYPE" 
       TCGA-05-4418        TCGA-05-4420        TCGA-05-4424        TCGA-05-4426 
"SPANXN2 WILD-TYPE" "SPANXN2 WILD-TYPE" "SPANXN2 WILD-TYPE" "SPANXN2 WILD-TYPE" 
       TCGA-05-4427        TCGA-05-4430        TCGA-05-4432        TCGA-05-4433 
  "SPANXN2 MUTATED" "SPANXN2 WILD-TYPE" "SPANXN2 WILD-TYPE" "SPANXN2 WILD-TYPE" 
       TCGA-05-4434        TCGA-05-5420        TCGA-05-5423        TCGA-05-5425 
"SPANXN2 WILD-TYPE" "SPANXN2 WILD-TYPE" "SPANXN2 WILD-TYPE" "SPANXN2 WILD-TYPE" 
       TCGA-05-5429        TCGA-05-5715        TCGA-35-3615        TCGA-35-4122 
"SPANXN2 WILD-TYPE" "SPANXN2 WILD-TYPE" "SPANXN2 WILD-TYPE" "SPANXN2 WILD-TYPE" 
       TCGA-35-4123        TCGA-35-5375        TCGA-38-4625        TCGA-38-4626 
"SPANXN2 WILD-TYPE" "SPANXN2 WILD-TYPE" "SPANXN2 WILD-TYPE" "SPANXN2 WILD-TYPE" 
       TCGA-38-4627        TCGA-38-4628        TCGA-38-4629        TCGA-38-4630 
"SPANXN2 WILD-TYPE" "SPANXN2 WILD-TYPE" "SPANXN2 WILD-TYPE" "SPANXN2 WILD-TYPE" 
       TCGA-38-4631        TCGA-38-4632        TCGA-38-6178        TCGA-44-2655 
"SPANXN2 WILD-TYPE" "SPANXN2 WILD-TYPE" "SPANXN2 WILD-TYPE" "SPANXN2 WILD-TYPE" 
       TCGA-44-2656        TCGA-44-2657        TCGA-44-2659        TCGA-44-2661 
"SPANXN2 WILD-TYPE" "SPANXN2 WILD-TYPE" "SPANXN2 WILD-TYPE" "SPANXN2 WILD-TYPE" 
       TCGA-44-2662        TCGA-44-2665        TCGA-44-2666        TCGA-44-2668 
"SPANXN2 WILD-TYPE" "SPANXN2 WILD-TYPE" "SPANXN2 WILD-TYPE" "SPANXN2 WILD-TYPE" 
       TCGA-44-3396        TCGA-44-3398        TCGA-44-3918        TCGA-44-3919 
"SPANXN2 WILD-TYPE" "SPANXN2 WILD-TYPE"   "SPANXN2 MUTATED" "SPANXN2 WILD-TYPE" 
       TCGA-44-4112        TCGA-44-5643        TCGA-44-5645        TCGA-44-6144 
"SPANXN2 WILD-TYPE" "SPANXN2 WILD-TYPE" "SPANXN2 WILD-TYPE" "SPANXN2 WILD-TYPE" 
       TCGA-44-6145        TCGA-44-6146        TCGA-44-6147        TCGA-44-6148 
"SPANXN2 WILD-TYPE" "SPANXN2 WILD-TYPE" "SPANXN2 WILD-TYPE" "SPANXN2 WILD-TYPE" 
       TCGA-44-6774        TCGA-44-6775        TCGA-44-6776        TCGA-44-6777 
"SPANXN2 WILD-TYPE" "SPANXN2 WILD-TYPE" "SPANXN2 WILD-TYPE" "SPANXN2 WILD-TYPE" 
       TCGA-44-6778        TCGA-44-6779        TCGA-49-4486        TCGA-49-4487 
"SPANXN2 WILD-TYPE" "SPANXN2 WILD-TYPE" "SPANXN2 WILD-TYPE" "SPANXN2 WILD-TYPE" 
       TCGA-49-4488        TCGA-49-4490        TCGA-49-4494        TCGA-49-4501 
"SPANXN2 WILD-TYPE" "SPANXN2 WILD-TYPE" "SPANXN2 WILD-TYPE" "SPANXN2 WILD-TYPE" 
       TCGA-49-4505        TCGA-49-4506        TCGA-49-4507        TCGA-49-4510 
"SPANXN2 WILD-TYPE" "SPANXN2 WILD-TYPE" "SPANXN2 WILD-TYPE" "SPANXN2 WILD-TYPE" 
       TCGA-49-4512        TCGA-49-4514        TCGA-49-6742        TCGA-49-6743 
"SPANXN2 WILD-TYPE" "SPANXN2 WILD-TYPE" "SPANXN2 WILD-TYPE" "SPANXN2 WILD-TYPE" 
       TCGA-49-6744        TCGA-49-6745        TCGA-50-5044        TCGA-50-5045 
"SPANXN2 WILD-TYPE" "SPANXN2 WILD-TYPE" "SPANXN2 WILD-TYPE" "SPANXN2 WILD-TYPE" 
       TCGA-50-5049        TCGA-50-5051        TCGA-50-5055        TCGA-50-5066 
"SPANXN2 WILD-TYPE" "SPANXN2 WILD-TYPE" "SPANXN2 WILD-TYPE" "SPANXN2 WILD-TYPE" 
       TCGA-50-5068        TCGA-50-5072        TCGA-50-5930        TCGA-50-5931 
"SPANXN2 WILD-TYPE" "SPANXN2 WILD-TYPE" "SPANXN2 WILD-TYPE" "SPANXN2 WILD-TYPE" 
       TCGA-50-5932        TCGA-50-5933        TCGA-50-5935        TCGA-50-5936 
"SPANXN2 WILD-TYPE" "SPANXN2 WILD-TYPE" "SPANXN2 WILD-TYPE" "SPANXN2 WILD-TYPE" 
       TCGA-50-5939        TCGA-50-5941        TCGA-50-5942        TCGA-50-5944 
"SPANXN2 WILD-TYPE" "SPANXN2 WILD-TYPE" "SPANXN2 WILD-TYPE" "SPANXN2 WILD-TYPE" 
       TCGA-50-5946        TCGA-50-6590        TCGA-50-6591        TCGA-50-6592 
"SPANXN2 WILD-TYPE" "SPANXN2 WILD-TYPE" "SPANXN2 WILD-TYPE" "SPANXN2 WILD-TYPE" 
       TCGA-50-6593        TCGA-50-6594        TCGA-50-6595        TCGA-50-6597 
"SPANXN2 WILD-TYPE" "SPANXN2 WILD-TYPE" "SPANXN2 WILD-TYPE" "SPANXN2 WILD-TYPE" 
       TCGA-55-1592        TCGA-55-1594        TCGA-55-1595        TCGA-55-1596 
  "SPANXN2 MUTATED" "SPANXN2 WILD-TYPE" "SPANXN2 WILD-TYPE" "SPANXN2 WILD-TYPE" 
       TCGA-55-5899        TCGA-55-6543        TCGA-55-6642        TCGA-55-6712 
"SPANXN2 WILD-TYPE" "SPANXN2 WILD-TYPE" "SPANXN2 WILD-TYPE" "SPANXN2 WILD-TYPE" 
       TCGA-64-1676        TCGA-64-1677        TCGA-64-1678        TCGA-64-1680 
"SPANXN2 WILD-TYPE" "SPANXN2 WILD-TYPE" "SPANXN2 WILD-TYPE" "SPANXN2 WILD-TYPE" 
       TCGA-64-5774        TCGA-64-5775        TCGA-64-5778        TCGA-64-5779 
"SPANXN2 WILD-TYPE" "SPANXN2 WILD-TYPE" "SPANXN2 WILD-TYPE" "SPANXN2 WILD-TYPE" 
       TCGA-64-5781        TCGA-64-5815        TCGA-67-3770        TCGA-67-3771 
"SPANXN2 WILD-TYPE" "SPANXN2 WILD-TYPE" "SPANXN2 WILD-TYPE" "SPANXN2 WILD-TYPE" 
       TCGA-67-3772        TCGA-67-3773        TCGA-67-3774        TCGA-67-6215 
"SPANXN2 WILD-TYPE" "SPANXN2 WILD-TYPE" "SPANXN2 WILD-TYPE" "SPANXN2 WILD-TYPE" 
       TCGA-67-6216        TCGA-67-6217        TCGA-71-6725        TCGA-73-4658 
"SPANXN2 WILD-TYPE" "SPANXN2 WILD-TYPE" "SPANXN2 WILD-TYPE" "SPANXN2 WILD-TYPE" 
       TCGA-73-4659        TCGA-73-4662        TCGA-73-4666        TCGA-73-4668 
"SPANXN2 WILD-TYPE" "SPANXN2 WILD-TYPE" "SPANXN2 WILD-TYPE" "SPANXN2 WILD-TYPE" 
       TCGA-73-4670        TCGA-73-4675        TCGA-73-4676        TCGA-73-4677 
"SPANXN2 WILD-TYPE" "SPANXN2 WILD-TYPE" "SPANXN2 WILD-TYPE" "SPANXN2 WILD-TYPE" 
       TCGA-91-6828        TCGA-91-6829        TCGA-91-6831        TCGA-91-6835 
"SPANXN2 WILD-TYPE" "SPANXN2 WILD-TYPE" "SPANXN2 WILD-TYPE" "SPANXN2 WILD-TYPE" 
       TCGA-91-6836 
"SPANXN2 WILD-TYPE" 
[1] "hr=" "1.7"
D41V2, continuous
D41V3, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  SPANXN2 MUTATED      3    4
  SPANXN2 WILD-TYPE   90   75
        clus
vv       SPANXN2 MUTATED SPANXN2 WILD-TYPE
  FEMALE               3                90
  MALE                 4                75
D41V4, continuous
D41V5, multiclass
D41V6, multiclass
    clus
vv   SPANXN2 MUTATED SPANXN2 WILD-TYPE
  T1               1                40
  T2               5               103
  T3               0                14
  T4               1                 7
D41V7, multiclass
       clus
vv      SPANXN2 MUTATED SPANXN2 WILD-TYPE
  N0                  4                91
  N1                  3                34
  N2+N3               0                35
D41V8, multiclass
    clus
vv   SPANXN2 MUTATED SPANXN2 WILD-TYPE
  M0               7               130
  M1               0                 9
  MX               0                22
D41V9, multiclass
     clus
vv    SPANXN2 MUTATED SPANXN2 WILD-TYPE
  I                 4                84
  II                2                31
  III               1                38
  IV                0                 9
D41V10, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  SPANXN2 MUTATED      0    7
  SPANXN2 WILD-TYPE   16  149
     clus
vv    SPANXN2 MUTATED SPANXN2 WILD-TYPE
  NO                0                16
  YES               7               149
D41V11, continuous
D41V12, continuous
D41V13, multiclass
                                             clus
vv                                            SPANXN2 MUTATED SPANXN2 WILD-TYPE
  CURRENT REFORMED SMOKER FOR < OR = 15 YEARS               4                58
  CURRENT REFORMED SMOKER FOR > 15 YEARS                    2                44
  CURRENT SMOKER                                            1                27
  LIFELONG NON-SMOKER                                       0                24
D41V14, continuous

Clustering(42) Variable = RIT1 MUTATION ANALYSIS
D42V1, survival
                sevent
clus2             0  1
  RIT1 MUTATED    6  2
  RIT1 WILD-TYPE 93 48
  RIT1 MUTATED RIT1 WILD-TYPE 
             8            141 
  RIT1 MUTATED RIT1 WILD-TYPE 
             2             48 
$`RIT1 MUTATED`
TCGA-05-4384 TCGA-05-4396 TCGA-44-6779 TCGA-49-4514 TCGA-55-1596 TCGA-73-4666 
       14.01         9.96        16.41        43.20        45.17        20.28 
TCGA-73-4675 TCGA-91-6836 
        1.32         0.36 

$`RIT1 WILD-TYPE`
TCGA-05-4249 TCGA-05-4250 TCGA-05-4382 TCGA-05-4390 TCGA-05-4397 TCGA-05-4398 
       38.07         3.98        19.92        37.02        24.03        47.05 
TCGA-05-4402 TCGA-05-4405 TCGA-05-4415 TCGA-05-4417 TCGA-05-4418 TCGA-05-4420 
        8.02        20.05         2.96        14.93         8.98        29.95 
TCGA-05-4424 TCGA-05-4426 TCGA-05-4427 TCGA-05-4430 TCGA-05-4432 TCGA-05-4433 
       30.02        26.01        26.01        25.02        25.02        24.00 
TCGA-05-4434 TCGA-05-5420 TCGA-05-5423 TCGA-05-5425 TCGA-05-5429 TCGA-05-5715 
       15.02         1.02         4.96         2.96         0.99         2.04 
TCGA-35-3615 TCGA-35-4122 TCGA-35-4123 TCGA-35-5375 TCGA-38-4625 TCGA-38-4626 
        0.46         7.36         5.95         8.68        47.61        85.32 
TCGA-38-4627 TCGA-38-4628 TCGA-38-4629 TCGA-38-4630 TCGA-38-4631 TCGA-38-4632 
       37.71        49.02        28.37        35.28        11.64        44.61 
TCGA-38-6178 TCGA-44-2655 TCGA-44-2656 TCGA-44-2657 TCGA-44-2659 TCGA-44-2661 
        5.19        18.87        19.10        13.15        17.39         3.39 
TCGA-44-2662 TCGA-44-2665 TCGA-44-2666 TCGA-44-2668 TCGA-44-3396 TCGA-44-3398 
       15.78        13.15         3.19         8.09        10.22         8.32 
TCGA-44-3918 TCGA-44-3919 TCGA-44-4112 TCGA-44-5643 TCGA-44-5645 TCGA-44-6144 
        6.44         6.21         4.60         3.48         6.84         0.30 
TCGA-44-6145 TCGA-44-6146 TCGA-44-6147 TCGA-44-6148 TCGA-44-6774 TCGA-44-6775 
        3.35         9.93         7.76         3.12         5.42         2.70 
TCGA-44-6776 TCGA-44-6777 TCGA-44-6778 TCGA-49-4486 TCGA-49-4487 TCGA-49-4488 
       63.72        32.45        36.49        76.21        28.11        28.57 
TCGA-49-4490 TCGA-49-4494 TCGA-49-4501 TCGA-49-4505 TCGA-49-4506 TCGA-49-4507 
       12.66        35.54        46.72        14.07        32.84         8.81 
TCGA-49-4510 TCGA-49-4512 TCGA-49-6742 TCGA-49-6743 TCGA-49-6744 TCGA-49-6745 
       29.46        29.75        15.02        12.13        12.99         4.93 
TCGA-50-5044 TCGA-50-5045 TCGA-50-5049 TCGA-50-5051 TCGA-50-5055 TCGA-50-5066 
       20.48        71.47        48.82        14.96        25.81         9.76 
TCGA-50-5068 TCGA-50-5072 TCGA-50-5930 TCGA-50-5931 TCGA-50-5932 TCGA-50-5933 
       49.28         8.05         9.27         8.78        35.87        77.88 
TCGA-50-5935 TCGA-50-5936 TCGA-50-5939 TCGA-50-5941 TCGA-50-5942 TCGA-50-5944 
       21.47         8.45        15.12         9.37         4.44        12.26 
TCGA-50-5946 TCGA-50-6590 TCGA-50-6591 TCGA-50-6592 TCGA-50-6593 TCGA-50-6594 
       11.47        42.31         3.88        25.51        11.05        12.16 
TCGA-50-6595 TCGA-50-6597 TCGA-55-1592 TCGA-55-1594 TCGA-55-1595 TCGA-55-5899 
        6.21        33.37        23.05        38.73        48.62         2.86 
TCGA-55-6543 TCGA-55-6642 TCGA-55-6712 TCGA-64-1676 TCGA-64-1677 TCGA-64-1678 
        0.07        32.61         0.79        56.81        20.65        39.09 
TCGA-64-1680 TCGA-64-5774 TCGA-64-5775 TCGA-64-5778 TCGA-64-5779 TCGA-64-5781 
       37.02        83.84         0.10        30.44        16.67        39.52 
TCGA-64-5815 TCGA-67-3770 TCGA-67-3771 TCGA-67-3772 TCGA-67-3773 TCGA-67-3774 
        7.33         0.99         1.97         0.59         2.04         0.59 
TCGA-67-6215 TCGA-67-6216 TCGA-67-6217 TCGA-71-6725 TCGA-73-4658 TCGA-73-4659 
        0.89         0.69        13.87         2.01        52.57        23.38 
TCGA-73-4662 TCGA-73-4668 TCGA-73-4670 TCGA-73-4676 TCGA-73-4677 TCGA-91-6828 
       29.95        15.35         0.46         4.01         1.25         1.22 
TCGA-91-6829 TCGA-91-6831 TCGA-91-6835 
       41.33         1.28         1.15 

  RIT1 MUTATED RIT1 WILD-TYPE 
          0.36           0.07 
  RIT1 MUTATED RIT1 WILD-TYPE 
         45.17          85.32 
  RIT1 MUTATED RIT1 WILD-TYPE 
         15.21          13.15 
[1] "0.4 - 45.2 (15.2)" "0.1 - 85.3 (13.2)"
    TCGA-05-4249     TCGA-05-4250     TCGA-05-4382     TCGA-05-4384 
"RIT1 WILD-TYPE" "RIT1 WILD-TYPE" "RIT1 WILD-TYPE"   "RIT1 MUTATED" 
    TCGA-05-4390     TCGA-05-4396     TCGA-05-4397     TCGA-05-4398 
"RIT1 WILD-TYPE"   "RIT1 MUTATED" "RIT1 WILD-TYPE" "RIT1 WILD-TYPE" 
    TCGA-05-4402     TCGA-05-4405     TCGA-05-4415     TCGA-05-4417 
"RIT1 WILD-TYPE" "RIT1 WILD-TYPE" "RIT1 WILD-TYPE" "RIT1 WILD-TYPE" 
    TCGA-05-4418     TCGA-05-4420     TCGA-05-4424     TCGA-05-4426 
"RIT1 WILD-TYPE" "RIT1 WILD-TYPE" "RIT1 WILD-TYPE" "RIT1 WILD-TYPE" 
    TCGA-05-4427     TCGA-05-4430     TCGA-05-4432     TCGA-05-4433 
"RIT1 WILD-TYPE" "RIT1 WILD-TYPE" "RIT1 WILD-TYPE" "RIT1 WILD-TYPE" 
    TCGA-05-4434     TCGA-05-5420     TCGA-05-5423     TCGA-05-5425 
"RIT1 WILD-TYPE" "RIT1 WILD-TYPE" "RIT1 WILD-TYPE" "RIT1 WILD-TYPE" 
    TCGA-05-5429     TCGA-05-5715     TCGA-35-3615     TCGA-35-4122 
"RIT1 WILD-TYPE" "RIT1 WILD-TYPE" "RIT1 WILD-TYPE" "RIT1 WILD-TYPE" 
    TCGA-35-4123     TCGA-35-5375     TCGA-38-4625     TCGA-38-4626 
"RIT1 WILD-TYPE" "RIT1 WILD-TYPE" "RIT1 WILD-TYPE" "RIT1 WILD-TYPE" 
    TCGA-38-4627     TCGA-38-4628     TCGA-38-4629     TCGA-38-4630 
"RIT1 WILD-TYPE" "RIT1 WILD-TYPE" "RIT1 WILD-TYPE" "RIT1 WILD-TYPE" 
    TCGA-38-4631     TCGA-38-4632     TCGA-38-6178     TCGA-44-2655 
"RIT1 WILD-TYPE" "RIT1 WILD-TYPE" "RIT1 WILD-TYPE" "RIT1 WILD-TYPE" 
    TCGA-44-2656     TCGA-44-2657     TCGA-44-2659     TCGA-44-2661 
"RIT1 WILD-TYPE" "RIT1 WILD-TYPE" "RIT1 WILD-TYPE" "RIT1 WILD-TYPE" 
    TCGA-44-2662     TCGA-44-2665     TCGA-44-2666     TCGA-44-2668 
"RIT1 WILD-TYPE" "RIT1 WILD-TYPE" "RIT1 WILD-TYPE" "RIT1 WILD-TYPE" 
    TCGA-44-3396     TCGA-44-3398     TCGA-44-3918     TCGA-44-3919 
"RIT1 WILD-TYPE" "RIT1 WILD-TYPE" "RIT1 WILD-TYPE" "RIT1 WILD-TYPE" 
    TCGA-44-4112     TCGA-44-5643     TCGA-44-5645     TCGA-44-6144 
"RIT1 WILD-TYPE" "RIT1 WILD-TYPE" "RIT1 WILD-TYPE" "RIT1 WILD-TYPE" 
    TCGA-44-6145     TCGA-44-6146     TCGA-44-6147     TCGA-44-6148 
"RIT1 WILD-TYPE" "RIT1 WILD-TYPE" "RIT1 WILD-TYPE" "RIT1 WILD-TYPE" 
    TCGA-44-6774     TCGA-44-6775     TCGA-44-6776     TCGA-44-6777 
"RIT1 WILD-TYPE" "RIT1 WILD-TYPE" "RIT1 WILD-TYPE" "RIT1 WILD-TYPE" 
    TCGA-44-6778     TCGA-44-6779     TCGA-49-4486     TCGA-49-4487 
"RIT1 WILD-TYPE"   "RIT1 MUTATED" "RIT1 WILD-TYPE" "RIT1 WILD-TYPE" 
    TCGA-49-4488     TCGA-49-4490     TCGA-49-4494     TCGA-49-4501 
"RIT1 WILD-TYPE" "RIT1 WILD-TYPE" "RIT1 WILD-TYPE" "RIT1 WILD-TYPE" 
    TCGA-49-4505     TCGA-49-4506     TCGA-49-4507     TCGA-49-4510 
"RIT1 WILD-TYPE" "RIT1 WILD-TYPE" "RIT1 WILD-TYPE" "RIT1 WILD-TYPE" 
    TCGA-49-4512     TCGA-49-4514     TCGA-49-6742     TCGA-49-6743 
"RIT1 WILD-TYPE"   "RIT1 MUTATED" "RIT1 WILD-TYPE" "RIT1 WILD-TYPE" 
    TCGA-49-6744     TCGA-49-6745     TCGA-50-5044     TCGA-50-5045 
"RIT1 WILD-TYPE" "RIT1 WILD-TYPE" "RIT1 WILD-TYPE" "RIT1 WILD-TYPE" 
    TCGA-50-5049     TCGA-50-5051     TCGA-50-5055     TCGA-50-5066 
"RIT1 WILD-TYPE" "RIT1 WILD-TYPE" "RIT1 WILD-TYPE" "RIT1 WILD-TYPE" 
    TCGA-50-5068     TCGA-50-5072     TCGA-50-5930     TCGA-50-5931 
"RIT1 WILD-TYPE" "RIT1 WILD-TYPE" "RIT1 WILD-TYPE" "RIT1 WILD-TYPE" 
    TCGA-50-5932     TCGA-50-5933     TCGA-50-5935     TCGA-50-5936 
"RIT1 WILD-TYPE" "RIT1 WILD-TYPE" "RIT1 WILD-TYPE" "RIT1 WILD-TYPE" 
    TCGA-50-5939     TCGA-50-5941     TCGA-50-5942     TCGA-50-5944 
"RIT1 WILD-TYPE" "RIT1 WILD-TYPE" "RIT1 WILD-TYPE" "RIT1 WILD-TYPE" 
    TCGA-50-5946     TCGA-50-6590     TCGA-50-6591     TCGA-50-6592 
"RIT1 WILD-TYPE" "RIT1 WILD-TYPE" "RIT1 WILD-TYPE" "RIT1 WILD-TYPE" 
    TCGA-50-6593     TCGA-50-6594     TCGA-50-6595     TCGA-50-6597 
"RIT1 WILD-TYPE" "RIT1 WILD-TYPE" "RIT1 WILD-TYPE" "RIT1 WILD-TYPE" 
    TCGA-55-1592     TCGA-55-1594     TCGA-55-1595     TCGA-55-1596 
"RIT1 WILD-TYPE" "RIT1 WILD-TYPE" "RIT1 WILD-TYPE"   "RIT1 MUTATED" 
    TCGA-55-5899     TCGA-55-6543     TCGA-55-6642     TCGA-55-6712 
"RIT1 WILD-TYPE" "RIT1 WILD-TYPE" "RIT1 WILD-TYPE" "RIT1 WILD-TYPE" 
    TCGA-64-1676     TCGA-64-1677     TCGA-64-1678     TCGA-64-1680 
"RIT1 WILD-TYPE" "RIT1 WILD-TYPE" "RIT1 WILD-TYPE" "RIT1 WILD-TYPE" 
    TCGA-64-5774     TCGA-64-5775     TCGA-64-5778     TCGA-64-5779 
"RIT1 WILD-TYPE" "RIT1 WILD-TYPE" "RIT1 WILD-TYPE" "RIT1 WILD-TYPE" 
    TCGA-64-5781     TCGA-64-5815     TCGA-67-3770     TCGA-67-3771 
"RIT1 WILD-TYPE" "RIT1 WILD-TYPE" "RIT1 WILD-TYPE" "RIT1 WILD-TYPE" 
    TCGA-67-3772     TCGA-67-3773     TCGA-67-3774     TCGA-67-6215 
"RIT1 WILD-TYPE" "RIT1 WILD-TYPE" "RIT1 WILD-TYPE" "RIT1 WILD-TYPE" 
    TCGA-67-6216     TCGA-67-6217     TCGA-71-6725     TCGA-73-4658 
"RIT1 WILD-TYPE" "RIT1 WILD-TYPE" "RIT1 WILD-TYPE" "RIT1 WILD-TYPE" 
    TCGA-73-4659     TCGA-73-4662     TCGA-73-4666     TCGA-73-4668 
"RIT1 WILD-TYPE" "RIT1 WILD-TYPE"   "RIT1 MUTATED" "RIT1 WILD-TYPE" 
    TCGA-73-4670     TCGA-73-4675     TCGA-73-4676     TCGA-73-4677 
"RIT1 WILD-TYPE"   "RIT1 MUTATED" "RIT1 WILD-TYPE" "RIT1 WILD-TYPE" 
    TCGA-91-6828     TCGA-91-6829     TCGA-91-6831     TCGA-91-6835 
"RIT1 WILD-TYPE" "RIT1 WILD-TYPE" "RIT1 WILD-TYPE" "RIT1 WILD-TYPE" 
    TCGA-91-6836 
  "RIT1 MUTATED" 
    TCGA-05-4249     TCGA-05-4250     TCGA-05-4382     TCGA-05-4384 
"RIT1 WILD-TYPE" "RIT1 WILD-TYPE" "RIT1 WILD-TYPE"   "RIT1 MUTATED" 
    TCGA-05-4390     TCGA-05-4396     TCGA-05-4397     TCGA-05-4398 
"RIT1 WILD-TYPE"   "RIT1 MUTATED" "RIT1 WILD-TYPE" "RIT1 WILD-TYPE" 
    TCGA-05-4402     TCGA-05-4405     TCGA-05-4415     TCGA-05-4417 
"RIT1 WILD-TYPE" "RIT1 WILD-TYPE" "RIT1 WILD-TYPE" "RIT1 WILD-TYPE" 
    TCGA-05-4418     TCGA-05-4420     TCGA-05-4424     TCGA-05-4426 
"RIT1 WILD-TYPE" "RIT1 WILD-TYPE" "RIT1 WILD-TYPE" "RIT1 WILD-TYPE" 
    TCGA-05-4427     TCGA-05-4430     TCGA-05-4432     TCGA-05-4433 
"RIT1 WILD-TYPE" "RIT1 WILD-TYPE" "RIT1 WILD-TYPE" "RIT1 WILD-TYPE" 
    TCGA-05-4434     TCGA-05-5420     TCGA-05-5423     TCGA-05-5425 
"RIT1 WILD-TYPE" "RIT1 WILD-TYPE" "RIT1 WILD-TYPE" "RIT1 WILD-TYPE" 
    TCGA-05-5429     TCGA-05-5715     TCGA-35-3615     TCGA-35-4122 
"RIT1 WILD-TYPE" "RIT1 WILD-TYPE" "RIT1 WILD-TYPE" "RIT1 WILD-TYPE" 
    TCGA-35-4123     TCGA-35-5375     TCGA-38-4625     TCGA-38-4626 
"RIT1 WILD-TYPE" "RIT1 WILD-TYPE" "RIT1 WILD-TYPE" "RIT1 WILD-TYPE" 
    TCGA-38-4627     TCGA-38-4628     TCGA-38-4629     TCGA-38-4630 
"RIT1 WILD-TYPE" "RIT1 WILD-TYPE" "RIT1 WILD-TYPE" "RIT1 WILD-TYPE" 
    TCGA-38-4631     TCGA-38-4632     TCGA-38-6178     TCGA-44-2655 
"RIT1 WILD-TYPE" "RIT1 WILD-TYPE" "RIT1 WILD-TYPE" "RIT1 WILD-TYPE" 
    TCGA-44-2656     TCGA-44-2657     TCGA-44-2659     TCGA-44-2661 
"RIT1 WILD-TYPE" "RIT1 WILD-TYPE" "RIT1 WILD-TYPE" "RIT1 WILD-TYPE" 
    TCGA-44-2662     TCGA-44-2665     TCGA-44-2666     TCGA-44-2668 
"RIT1 WILD-TYPE" "RIT1 WILD-TYPE" "RIT1 WILD-TYPE" "RIT1 WILD-TYPE" 
    TCGA-44-3396     TCGA-44-3398     TCGA-44-3918     TCGA-44-3919 
"RIT1 WILD-TYPE" "RIT1 WILD-TYPE" "RIT1 WILD-TYPE" "RIT1 WILD-TYPE" 
    TCGA-44-4112     TCGA-44-5643     TCGA-44-5645     TCGA-44-6144 
"RIT1 WILD-TYPE" "RIT1 WILD-TYPE" "RIT1 WILD-TYPE" "RIT1 WILD-TYPE" 
    TCGA-44-6145     TCGA-44-6146     TCGA-44-6147     TCGA-44-6148 
"RIT1 WILD-TYPE" "RIT1 WILD-TYPE" "RIT1 WILD-TYPE" "RIT1 WILD-TYPE" 
    TCGA-44-6774     TCGA-44-6775     TCGA-44-6776     TCGA-44-6777 
"RIT1 WILD-TYPE" "RIT1 WILD-TYPE" "RIT1 WILD-TYPE" "RIT1 WILD-TYPE" 
    TCGA-44-6778     TCGA-44-6779     TCGA-49-4486     TCGA-49-4487 
"RIT1 WILD-TYPE"   "RIT1 MUTATED" "RIT1 WILD-TYPE" "RIT1 WILD-TYPE" 
    TCGA-49-4488     TCGA-49-4490     TCGA-49-4494     TCGA-49-4501 
"RIT1 WILD-TYPE" "RIT1 WILD-TYPE" "RIT1 WILD-TYPE" "RIT1 WILD-TYPE" 
    TCGA-49-4505     TCGA-49-4506     TCGA-49-4507     TCGA-49-4510 
"RIT1 WILD-TYPE" "RIT1 WILD-TYPE" "RIT1 WILD-TYPE" "RIT1 WILD-TYPE" 
    TCGA-49-4512     TCGA-49-4514     TCGA-49-6742     TCGA-49-6743 
"RIT1 WILD-TYPE"   "RIT1 MUTATED" "RIT1 WILD-TYPE" "RIT1 WILD-TYPE" 
    TCGA-49-6744     TCGA-49-6745     TCGA-50-5044     TCGA-50-5045 
"RIT1 WILD-TYPE" "RIT1 WILD-TYPE" "RIT1 WILD-TYPE" "RIT1 WILD-TYPE" 
    TCGA-50-5049     TCGA-50-5051     TCGA-50-5055     TCGA-50-5066 
"RIT1 WILD-TYPE" "RIT1 WILD-TYPE" "RIT1 WILD-TYPE" "RIT1 WILD-TYPE" 
    TCGA-50-5068     TCGA-50-5072     TCGA-50-5930     TCGA-50-5931 
"RIT1 WILD-TYPE" "RIT1 WILD-TYPE" "RIT1 WILD-TYPE" "RIT1 WILD-TYPE" 
    TCGA-50-5932     TCGA-50-5933     TCGA-50-5935     TCGA-50-5936 
"RIT1 WILD-TYPE" "RIT1 WILD-TYPE" "RIT1 WILD-TYPE" "RIT1 WILD-TYPE" 
    TCGA-50-5939     TCGA-50-5941     TCGA-50-5942     TCGA-50-5944 
"RIT1 WILD-TYPE" "RIT1 WILD-TYPE" "RIT1 WILD-TYPE" "RIT1 WILD-TYPE" 
    TCGA-50-5946     TCGA-50-6590     TCGA-50-6591     TCGA-50-6592 
"RIT1 WILD-TYPE" "RIT1 WILD-TYPE" "RIT1 WILD-TYPE" "RIT1 WILD-TYPE" 
    TCGA-50-6593     TCGA-50-6594     TCGA-50-6595     TCGA-50-6597 
"RIT1 WILD-TYPE" "RIT1 WILD-TYPE" "RIT1 WILD-TYPE" "RIT1 WILD-TYPE" 
    TCGA-55-1592     TCGA-55-1594     TCGA-55-1595     TCGA-55-1596 
"RIT1 WILD-TYPE" "RIT1 WILD-TYPE" "RIT1 WILD-TYPE"   "RIT1 MUTATED" 
    TCGA-55-5899     TCGA-55-6543     TCGA-55-6642     TCGA-55-6712 
"RIT1 WILD-TYPE" "RIT1 WILD-TYPE" "RIT1 WILD-TYPE" "RIT1 WILD-TYPE" 
    TCGA-64-1676     TCGA-64-1677     TCGA-64-1678     TCGA-64-1680 
"RIT1 WILD-TYPE" "RIT1 WILD-TYPE" "RIT1 WILD-TYPE" "RIT1 WILD-TYPE" 
    TCGA-64-5774     TCGA-64-5775     TCGA-64-5778     TCGA-64-5779 
"RIT1 WILD-TYPE" "RIT1 WILD-TYPE" "RIT1 WILD-TYPE" "RIT1 WILD-TYPE" 
    TCGA-64-5781     TCGA-64-5815     TCGA-67-3770     TCGA-67-3771 
"RIT1 WILD-TYPE" "RIT1 WILD-TYPE" "RIT1 WILD-TYPE" "RIT1 WILD-TYPE" 
    TCGA-67-3772     TCGA-67-3773     TCGA-67-3774     TCGA-67-6215 
"RIT1 WILD-TYPE" "RIT1 WILD-TYPE" "RIT1 WILD-TYPE" "RIT1 WILD-TYPE" 
    TCGA-67-6216     TCGA-67-6217     TCGA-71-6725     TCGA-73-4658 
"RIT1 WILD-TYPE" "RIT1 WILD-TYPE" "RIT1 WILD-TYPE" "RIT1 WILD-TYPE" 
    TCGA-73-4659     TCGA-73-4662     TCGA-73-4666     TCGA-73-4668 
"RIT1 WILD-TYPE" "RIT1 WILD-TYPE"   "RIT1 MUTATED" "RIT1 WILD-TYPE" 
    TCGA-73-4670     TCGA-73-4675     TCGA-73-4676     TCGA-73-4677 
"RIT1 WILD-TYPE"   "RIT1 MUTATED" "RIT1 WILD-TYPE" "RIT1 WILD-TYPE" 
    TCGA-91-6828     TCGA-91-6829     TCGA-91-6831     TCGA-91-6835 
"RIT1 WILD-TYPE" "RIT1 WILD-TYPE" "RIT1 WILD-TYPE" "RIT1 WILD-TYPE" 
    TCGA-91-6836 
  "RIT1 MUTATED" 
    TCGA-05-4249     TCGA-05-4250     TCGA-05-4382     TCGA-05-4384 
"RIT1 WILD-TYPE" "RIT1 WILD-TYPE" "RIT1 WILD-TYPE"   "RIT1 MUTATED" 
    TCGA-05-4390     TCGA-05-4396     TCGA-05-4397     TCGA-05-4398 
"RIT1 WILD-TYPE"   "RIT1 MUTATED" "RIT1 WILD-TYPE" "RIT1 WILD-TYPE" 
    TCGA-05-4402     TCGA-05-4405     TCGA-05-4415     TCGA-05-4417 
"RIT1 WILD-TYPE" "RIT1 WILD-TYPE" "RIT1 WILD-TYPE" "RIT1 WILD-TYPE" 
    TCGA-05-4418     TCGA-05-4420     TCGA-05-4424     TCGA-05-4426 
"RIT1 WILD-TYPE" "RIT1 WILD-TYPE" "RIT1 WILD-TYPE" "RIT1 WILD-TYPE" 
    TCGA-05-4427     TCGA-05-4430     TCGA-05-4432     TCGA-05-4433 
"RIT1 WILD-TYPE" "RIT1 WILD-TYPE" "RIT1 WILD-TYPE" "RIT1 WILD-TYPE" 
    TCGA-05-4434     TCGA-05-5420     TCGA-05-5423     TCGA-05-5425 
"RIT1 WILD-TYPE" "RIT1 WILD-TYPE" "RIT1 WILD-TYPE" "RIT1 WILD-TYPE" 
    TCGA-05-5429     TCGA-05-5715     TCGA-35-3615     TCGA-35-4122 
"RIT1 WILD-TYPE" "RIT1 WILD-TYPE" "RIT1 WILD-TYPE" "RIT1 WILD-TYPE" 
    TCGA-35-4123     TCGA-35-5375     TCGA-38-4625     TCGA-38-4626 
"RIT1 WILD-TYPE" "RIT1 WILD-TYPE" "RIT1 WILD-TYPE" "RIT1 WILD-TYPE" 
    TCGA-38-4627     TCGA-38-4628     TCGA-38-4629     TCGA-38-4630 
"RIT1 WILD-TYPE" "RIT1 WILD-TYPE" "RIT1 WILD-TYPE" "RIT1 WILD-TYPE" 
    TCGA-38-4631     TCGA-38-4632     TCGA-38-6178     TCGA-44-2655 
"RIT1 WILD-TYPE" "RIT1 WILD-TYPE" "RIT1 WILD-TYPE" "RIT1 WILD-TYPE" 
    TCGA-44-2656     TCGA-44-2657     TCGA-44-2659     TCGA-44-2661 
"RIT1 WILD-TYPE" "RIT1 WILD-TYPE" "RIT1 WILD-TYPE" "RIT1 WILD-TYPE" 
    TCGA-44-2662     TCGA-44-2665     TCGA-44-2666     TCGA-44-2668 
"RIT1 WILD-TYPE" "RIT1 WILD-TYPE" "RIT1 WILD-TYPE" "RIT1 WILD-TYPE" 
    TCGA-44-3396     TCGA-44-3398     TCGA-44-3918     TCGA-44-3919 
"RIT1 WILD-TYPE" "RIT1 WILD-TYPE" "RIT1 WILD-TYPE" "RIT1 WILD-TYPE" 
    TCGA-44-4112     TCGA-44-5643     TCGA-44-5645     TCGA-44-6144 
"RIT1 WILD-TYPE" "RIT1 WILD-TYPE" "RIT1 WILD-TYPE" "RIT1 WILD-TYPE" 
    TCGA-44-6145     TCGA-44-6146     TCGA-44-6147     TCGA-44-6148 
"RIT1 WILD-TYPE" "RIT1 WILD-TYPE" "RIT1 WILD-TYPE" "RIT1 WILD-TYPE" 
    TCGA-44-6774     TCGA-44-6775     TCGA-44-6776     TCGA-44-6777 
"RIT1 WILD-TYPE" "RIT1 WILD-TYPE" "RIT1 WILD-TYPE" "RIT1 WILD-TYPE" 
    TCGA-44-6778     TCGA-44-6779     TCGA-49-4486     TCGA-49-4487 
"RIT1 WILD-TYPE"   "RIT1 MUTATED" "RIT1 WILD-TYPE" "RIT1 WILD-TYPE" 
    TCGA-49-4488     TCGA-49-4490     TCGA-49-4494     TCGA-49-4501 
"RIT1 WILD-TYPE" "RIT1 WILD-TYPE" "RIT1 WILD-TYPE" "RIT1 WILD-TYPE" 
    TCGA-49-4505     TCGA-49-4506     TCGA-49-4507     TCGA-49-4510 
"RIT1 WILD-TYPE" "RIT1 WILD-TYPE" "RIT1 WILD-TYPE" "RIT1 WILD-TYPE" 
    TCGA-49-4512     TCGA-49-4514     TCGA-49-6742     TCGA-49-6743 
"RIT1 WILD-TYPE"   "RIT1 MUTATED" "RIT1 WILD-TYPE" "RIT1 WILD-TYPE" 
    TCGA-49-6744     TCGA-49-6745     TCGA-50-5044     TCGA-50-5045 
"RIT1 WILD-TYPE" "RIT1 WILD-TYPE" "RIT1 WILD-TYPE" "RIT1 WILD-TYPE" 
    TCGA-50-5049     TCGA-50-5051     TCGA-50-5055     TCGA-50-5066 
"RIT1 WILD-TYPE" "RIT1 WILD-TYPE" "RIT1 WILD-TYPE" "RIT1 WILD-TYPE" 
    TCGA-50-5068     TCGA-50-5072     TCGA-50-5930     TCGA-50-5931 
"RIT1 WILD-TYPE" "RIT1 WILD-TYPE" "RIT1 WILD-TYPE" "RIT1 WILD-TYPE" 
    TCGA-50-5932     TCGA-50-5933     TCGA-50-5935     TCGA-50-5936 
"RIT1 WILD-TYPE" "RIT1 WILD-TYPE" "RIT1 WILD-TYPE" "RIT1 WILD-TYPE" 
    TCGA-50-5939     TCGA-50-5941     TCGA-50-5942     TCGA-50-5944 
"RIT1 WILD-TYPE" "RIT1 WILD-TYPE" "RIT1 WILD-TYPE" "RIT1 WILD-TYPE" 
    TCGA-50-5946     TCGA-50-6590     TCGA-50-6591     TCGA-50-6592 
"RIT1 WILD-TYPE" "RIT1 WILD-TYPE" "RIT1 WILD-TYPE" "RIT1 WILD-TYPE" 
    TCGA-50-6593     TCGA-50-6594     TCGA-50-6595     TCGA-50-6597 
"RIT1 WILD-TYPE" "RIT1 WILD-TYPE" "RIT1 WILD-TYPE" "RIT1 WILD-TYPE" 
    TCGA-55-1592     TCGA-55-1594     TCGA-55-1595     TCGA-55-1596 
"RIT1 WILD-TYPE" "RIT1 WILD-TYPE" "RIT1 WILD-TYPE"   "RIT1 MUTATED" 
    TCGA-55-5899     TCGA-55-6543     TCGA-55-6642     TCGA-55-6712 
"RIT1 WILD-TYPE" "RIT1 WILD-TYPE" "RIT1 WILD-TYPE" "RIT1 WILD-TYPE" 
    TCGA-64-1676     TCGA-64-1677     TCGA-64-1678     TCGA-64-1680 
"RIT1 WILD-TYPE" "RIT1 WILD-TYPE" "RIT1 WILD-TYPE" "RIT1 WILD-TYPE" 
    TCGA-64-5774     TCGA-64-5775     TCGA-64-5778     TCGA-64-5779 
"RIT1 WILD-TYPE" "RIT1 WILD-TYPE" "RIT1 WILD-TYPE" "RIT1 WILD-TYPE" 
    TCGA-64-5781     TCGA-64-5815     TCGA-67-3770     TCGA-67-3771 
"RIT1 WILD-TYPE" "RIT1 WILD-TYPE" "RIT1 WILD-TYPE" "RIT1 WILD-TYPE" 
    TCGA-67-3772     TCGA-67-3773     TCGA-67-3774     TCGA-67-6215 
"RIT1 WILD-TYPE" "RIT1 WILD-TYPE" "RIT1 WILD-TYPE" "RIT1 WILD-TYPE" 
    TCGA-67-6216     TCGA-67-6217     TCGA-71-6725     TCGA-73-4658 
"RIT1 WILD-TYPE" "RIT1 WILD-TYPE" "RIT1 WILD-TYPE" "RIT1 WILD-TYPE" 
    TCGA-73-4659     TCGA-73-4662     TCGA-73-4666     TCGA-73-4668 
"RIT1 WILD-TYPE" "RIT1 WILD-TYPE"   "RIT1 MUTATED" "RIT1 WILD-TYPE" 
    TCGA-73-4670     TCGA-73-4675     TCGA-73-4676     TCGA-73-4677 
"RIT1 WILD-TYPE"   "RIT1 MUTATED" "RIT1 WILD-TYPE" "RIT1 WILD-TYPE" 
    TCGA-91-6828     TCGA-91-6829     TCGA-91-6831     TCGA-91-6835 
"RIT1 WILD-TYPE" "RIT1 WILD-TYPE" "RIT1 WILD-TYPE" "RIT1 WILD-TYPE" 
    TCGA-91-6836 
  "RIT1 MUTATED" 
[1] "hr=" "1.2"
D42V2, continuous
D42V3, binary
[1] "tbl2"
                cls
clus             [,1] [,2]
  RIT1 MUTATED      4    4
  RIT1 WILD-TYPE   89   75
        clus
vv       RIT1 MUTATED RIT1 WILD-TYPE
  FEMALE            4             89
  MALE              4             75
D42V4, continuous
[1] "Remove cluster labels:" "RIT1 MUTATED"          
clus
  RIT1 MUTATED RIT1 WILD-TYPE 
             1             11 
    TCGA-35-4122     TCGA-35-4123     TCGA-35-5375     TCGA-64-1677 
"RIT1 WILD-TYPE" "RIT1 WILD-TYPE" "RIT1 WILD-TYPE" "RIT1 WILD-TYPE" 
    TCGA-64-5778     TCGA-71-6725     TCGA-73-4659     TCGA-73-4662 
"RIT1 WILD-TYPE" "RIT1 WILD-TYPE" "RIT1 WILD-TYPE" "RIT1 WILD-TYPE" 
    TCGA-73-4668     TCGA-73-4676     TCGA-75-5122 
"RIT1 WILD-TYPE" "RIT1 WILD-TYPE" "RIT1 WILD-TYPE" 
D42V5, multiclass
D42V6, multiclass
    clus
vv   RIT1 MUTATED RIT1 WILD-TYPE
  T1            2             39
  T2            4            104
  T3            1             13
  T4            1              7
D42V7, multiclass
       clus
vv      RIT1 MUTATED RIT1 WILD-TYPE
  N0               3             92
  N1               4             33
  N2+N3            1             34
D42V8, multiclass
    clus
vv   RIT1 MUTATED RIT1 WILD-TYPE
  M0            5            132
  M1            1              8
  MX            2             20
D42V9, multiclass
     clus
vv    RIT1 MUTATED RIT1 WILD-TYPE
  I              2             86
  II             2             31
  III            3             36
  IV             1              8
D42V10, binary
[1] "tbl2"
                cls
clus             [,1] [,2]
  RIT1 MUTATED      1    7
  RIT1 WILD-TYPE   15  149
     clus
vv    RIT1 MUTATED RIT1 WILD-TYPE
  NO             1             15
  YES            7            149
D42V11, continuous
D42V12, continuous
D42V13, multiclass
                                             clus
vv                                            RIT1 MUTATED RIT1 WILD-TYPE
  CURRENT REFORMED SMOKER FOR < OR = 15 YEARS            3             59
  CURRENT REFORMED SMOKER FOR > 15 YEARS                 3             43
  CURRENT SMOKER                                         2             26
  LIFELONG NON-SMOKER                                    0             24
D42V14, continuous

Clustering(43) Variable = FERD3L MUTATION ANALYSIS
D43V1, survival
                  sevent
clus2               0  1
  FERD3L MUTATED    5  2
  FERD3L WILD-TYPE 94 48
  FERD3L MUTATED FERD3L WILD-TYPE 
               7              142 
  FERD3L MUTATED FERD3L WILD-TYPE 
               2               48 
$`FERD3L MUTATED`
TCGA-05-4424 TCGA-38-4626 TCGA-44-5645 TCGA-50-5045 TCGA-50-5933 TCGA-64-1676 
       30.02        85.32         6.84        71.47        77.88        56.81 
TCGA-64-5781 
       39.52 

$`FERD3L WILD-TYPE`
TCGA-05-4249 TCGA-05-4250 TCGA-05-4382 TCGA-05-4384 TCGA-05-4390 TCGA-05-4396 
       38.07         3.98        19.92        14.01        37.02         9.96 
TCGA-05-4397 TCGA-05-4398 TCGA-05-4402 TCGA-05-4405 TCGA-05-4415 TCGA-05-4417 
       24.03        47.05         8.02        20.05         2.96        14.93 
TCGA-05-4418 TCGA-05-4420 TCGA-05-4426 TCGA-05-4427 TCGA-05-4430 TCGA-05-4432 
        8.98        29.95        26.01        26.01        25.02        25.02 
TCGA-05-4433 TCGA-05-4434 TCGA-05-5420 TCGA-05-5423 TCGA-05-5425 TCGA-05-5429 
       24.00        15.02         1.02         4.96         2.96         0.99 
TCGA-05-5715 TCGA-35-3615 TCGA-35-4122 TCGA-35-4123 TCGA-35-5375 TCGA-38-4625 
        2.04         0.46         7.36         5.95         8.68        47.61 
TCGA-38-4627 TCGA-38-4628 TCGA-38-4629 TCGA-38-4630 TCGA-38-4631 TCGA-38-4632 
       37.71        49.02        28.37        35.28        11.64        44.61 
TCGA-38-6178 TCGA-44-2655 TCGA-44-2656 TCGA-44-2657 TCGA-44-2659 TCGA-44-2661 
        5.19        18.87        19.10        13.15        17.39         3.39 
TCGA-44-2662 TCGA-44-2665 TCGA-44-2666 TCGA-44-2668 TCGA-44-3396 TCGA-44-3398 
       15.78        13.15         3.19         8.09        10.22         8.32 
TCGA-44-3918 TCGA-44-3919 TCGA-44-4112 TCGA-44-5643 TCGA-44-6144 TCGA-44-6145 
        6.44         6.21         4.60         3.48         0.30         3.35 
TCGA-44-6146 TCGA-44-6147 TCGA-44-6148 TCGA-44-6774 TCGA-44-6775 TCGA-44-6776 
        9.93         7.76         3.12         5.42         2.70        63.72 
TCGA-44-6777 TCGA-44-6778 TCGA-44-6779 TCGA-49-4486 TCGA-49-4487 TCGA-49-4488 
       32.45        36.49        16.41        76.21        28.11        28.57 
TCGA-49-4490 TCGA-49-4494 TCGA-49-4501 TCGA-49-4505 TCGA-49-4506 TCGA-49-4507 
       12.66        35.54        46.72        14.07        32.84         8.81 
TCGA-49-4510 TCGA-49-4512 TCGA-49-4514 TCGA-49-6742 TCGA-49-6743 TCGA-49-6744 
       29.46        29.75        43.20        15.02        12.13        12.99 
TCGA-49-6745 TCGA-50-5044 TCGA-50-5049 TCGA-50-5051 TCGA-50-5055 TCGA-50-5066 
        4.93        20.48        48.82        14.96        25.81         9.76 
TCGA-50-5068 TCGA-50-5072 TCGA-50-5930 TCGA-50-5931 TCGA-50-5932 TCGA-50-5935 
       49.28         8.05         9.27         8.78        35.87        21.47 
TCGA-50-5936 TCGA-50-5939 TCGA-50-5941 TCGA-50-5942 TCGA-50-5944 TCGA-50-5946 
        8.45        15.12         9.37         4.44        12.26        11.47 
TCGA-50-6590 TCGA-50-6591 TCGA-50-6592 TCGA-50-6593 TCGA-50-6594 TCGA-50-6595 
       42.31         3.88        25.51        11.05        12.16         6.21 
TCGA-50-6597 TCGA-55-1592 TCGA-55-1594 TCGA-55-1595 TCGA-55-1596 TCGA-55-5899 
       33.37        23.05        38.73        48.62        45.17         2.86 
TCGA-55-6543 TCGA-55-6642 TCGA-55-6712 TCGA-64-1677 TCGA-64-1678 TCGA-64-1680 
        0.07        32.61         0.79        20.65        39.09        37.02 
TCGA-64-5774 TCGA-64-5775 TCGA-64-5778 TCGA-64-5779 TCGA-64-5815 TCGA-67-3770 
       83.84         0.10        30.44        16.67         7.33         0.99 
TCGA-67-3771 TCGA-67-3772 TCGA-67-3773 TCGA-67-3774 TCGA-67-6215 TCGA-67-6216 
        1.97         0.59         2.04         0.59         0.89         0.69 
TCGA-67-6217 TCGA-71-6725 TCGA-73-4658 TCGA-73-4659 TCGA-73-4662 TCGA-73-4666 
       13.87         2.01        52.57        23.38        29.95        20.28 
TCGA-73-4668 TCGA-73-4670 TCGA-73-4675 TCGA-73-4676 TCGA-73-4677 TCGA-91-6828 
       15.35         0.46         1.32         4.01         1.25         1.22 
TCGA-91-6829 TCGA-91-6831 TCGA-91-6835 TCGA-91-6836 
       41.33         1.28         1.15         0.36 

  FERD3L MUTATED FERD3L WILD-TYPE 
            6.84             0.07 
  FERD3L MUTATED FERD3L WILD-TYPE 
           85.32            83.84 
  FERD3L MUTATED FERD3L WILD-TYPE 
           56.81            13.07 
[1] "6.8 - 85.3 (56.8)" "0.1 - 83.8 (13.1)"
      TCGA-05-4249       TCGA-05-4250       TCGA-05-4382       TCGA-05-4384 
"FERD3L WILD-TYPE" "FERD3L WILD-TYPE" "FERD3L WILD-TYPE" "FERD3L WILD-TYPE" 
      TCGA-05-4390       TCGA-05-4396       TCGA-05-4397       TCGA-05-4398 
"FERD3L WILD-TYPE" "FERD3L WILD-TYPE" "FERD3L WILD-TYPE" "FERD3L WILD-TYPE" 
      TCGA-05-4402       TCGA-05-4405       TCGA-05-4415       TCGA-05-4417 
"FERD3L WILD-TYPE" "FERD3L WILD-TYPE" "FERD3L WILD-TYPE" "FERD3L WILD-TYPE" 
      TCGA-05-4418       TCGA-05-4420       TCGA-05-4424       TCGA-05-4426 
"FERD3L WILD-TYPE" "FERD3L WILD-TYPE"   "FERD3L MUTATED" "FERD3L WILD-TYPE" 
      TCGA-05-4427       TCGA-05-4430       TCGA-05-4432       TCGA-05-4433 
"FERD3L WILD-TYPE" "FERD3L WILD-TYPE" "FERD3L WILD-TYPE" "FERD3L WILD-TYPE" 
      TCGA-05-4434       TCGA-05-5420       TCGA-05-5423       TCGA-05-5425 
"FERD3L WILD-TYPE" "FERD3L WILD-TYPE" "FERD3L WILD-TYPE" "FERD3L WILD-TYPE" 
      TCGA-05-5429       TCGA-05-5715       TCGA-35-3615       TCGA-35-4122 
"FERD3L WILD-TYPE" "FERD3L WILD-TYPE" "FERD3L WILD-TYPE" "FERD3L WILD-TYPE" 
      TCGA-35-4123       TCGA-35-5375       TCGA-38-4625       TCGA-38-4626 
"FERD3L WILD-TYPE" "FERD3L WILD-TYPE" "FERD3L WILD-TYPE"   "FERD3L MUTATED" 
      TCGA-38-4627       TCGA-38-4628       TCGA-38-4629       TCGA-38-4630 
"FERD3L WILD-TYPE" "FERD3L WILD-TYPE" "FERD3L WILD-TYPE" "FERD3L WILD-TYPE" 
      TCGA-38-4631       TCGA-38-4632       TCGA-38-6178       TCGA-44-2655 
"FERD3L WILD-TYPE" "FERD3L WILD-TYPE" "FERD3L WILD-TYPE" "FERD3L WILD-TYPE" 
      TCGA-44-2656       TCGA-44-2657       TCGA-44-2659       TCGA-44-2661 
"FERD3L WILD-TYPE" "FERD3L WILD-TYPE" "FERD3L WILD-TYPE" "FERD3L WILD-TYPE" 
      TCGA-44-2662       TCGA-44-2665       TCGA-44-2666       TCGA-44-2668 
"FERD3L WILD-TYPE" "FERD3L WILD-TYPE" "FERD3L WILD-TYPE" "FERD3L WILD-TYPE" 
      TCGA-44-3396       TCGA-44-3398       TCGA-44-3918       TCGA-44-3919 
"FERD3L WILD-TYPE" "FERD3L WILD-TYPE" "FERD3L WILD-TYPE" "FERD3L WILD-TYPE" 
      TCGA-44-4112       TCGA-44-5643       TCGA-44-5645       TCGA-44-6144 
"FERD3L WILD-TYPE" "FERD3L WILD-TYPE"   "FERD3L MUTATED" "FERD3L WILD-TYPE" 
      TCGA-44-6145       TCGA-44-6146       TCGA-44-6147       TCGA-44-6148 
"FERD3L WILD-TYPE" "FERD3L WILD-TYPE" "FERD3L WILD-TYPE" "FERD3L WILD-TYPE" 
      TCGA-44-6774       TCGA-44-6775       TCGA-44-6776       TCGA-44-6777 
"FERD3L WILD-TYPE" "FERD3L WILD-TYPE" "FERD3L WILD-TYPE" "FERD3L WILD-TYPE" 
      TCGA-44-6778       TCGA-44-6779       TCGA-49-4486       TCGA-49-4487 
"FERD3L WILD-TYPE" "FERD3L WILD-TYPE" "FERD3L WILD-TYPE" "FERD3L WILD-TYPE" 
      TCGA-49-4488       TCGA-49-4490       TCGA-49-4494       TCGA-49-4501 
"FERD3L WILD-TYPE" "FERD3L WILD-TYPE" "FERD3L WILD-TYPE" "FERD3L WILD-TYPE" 
      TCGA-49-4505       TCGA-49-4506       TCGA-49-4507       TCGA-49-4510 
"FERD3L WILD-TYPE" "FERD3L WILD-TYPE" "FERD3L WILD-TYPE" "FERD3L WILD-TYPE" 
      TCGA-49-4512       TCGA-49-4514       TCGA-49-6742       TCGA-49-6743 
"FERD3L WILD-TYPE" "FERD3L WILD-TYPE" "FERD3L WILD-TYPE" "FERD3L WILD-TYPE" 
      TCGA-49-6744       TCGA-49-6745       TCGA-50-5044       TCGA-50-5045 
"FERD3L WILD-TYPE" "FERD3L WILD-TYPE" "FERD3L WILD-TYPE"   "FERD3L MUTATED" 
      TCGA-50-5049       TCGA-50-5051       TCGA-50-5055       TCGA-50-5066 
"FERD3L WILD-TYPE" "FERD3L WILD-TYPE" "FERD3L WILD-TYPE" "FERD3L WILD-TYPE" 
      TCGA-50-5068       TCGA-50-5072       TCGA-50-5930       TCGA-50-5931 
"FERD3L WILD-TYPE" "FERD3L WILD-TYPE" "FERD3L WILD-TYPE" "FERD3L WILD-TYPE" 
      TCGA-50-5932       TCGA-50-5933       TCGA-50-5935       TCGA-50-5936 
"FERD3L WILD-TYPE"   "FERD3L MUTATED" "FERD3L WILD-TYPE" "FERD3L WILD-TYPE" 
      TCGA-50-5939       TCGA-50-5941       TCGA-50-5942       TCGA-50-5944 
"FERD3L WILD-TYPE" "FERD3L WILD-TYPE" "FERD3L WILD-TYPE" "FERD3L WILD-TYPE" 
      TCGA-50-5946       TCGA-50-6590       TCGA-50-6591       TCGA-50-6592 
"FERD3L WILD-TYPE" "FERD3L WILD-TYPE" "FERD3L WILD-TYPE" "FERD3L WILD-TYPE" 
      TCGA-50-6593       TCGA-50-6594       TCGA-50-6595       TCGA-50-6597 
"FERD3L WILD-TYPE" "FERD3L WILD-TYPE" "FERD3L WILD-TYPE" "FERD3L WILD-TYPE" 
      TCGA-55-1592       TCGA-55-1594       TCGA-55-1595       TCGA-55-1596 
"FERD3L WILD-TYPE" "FERD3L WILD-TYPE" "FERD3L WILD-TYPE" "FERD3L WILD-TYPE" 
      TCGA-55-5899       TCGA-55-6543       TCGA-55-6642       TCGA-55-6712 
"FERD3L WILD-TYPE" "FERD3L WILD-TYPE" "FERD3L WILD-TYPE" "FERD3L WILD-TYPE" 
      TCGA-64-1676       TCGA-64-1677       TCGA-64-1678       TCGA-64-1680 
  "FERD3L MUTATED" "FERD3L WILD-TYPE" "FERD3L WILD-TYPE" "FERD3L WILD-TYPE" 
      TCGA-64-5774       TCGA-64-5775       TCGA-64-5778       TCGA-64-5779 
"FERD3L WILD-TYPE" "FERD3L WILD-TYPE" "FERD3L WILD-TYPE" "FERD3L WILD-TYPE" 
      TCGA-64-5781       TCGA-64-5815       TCGA-67-3770       TCGA-67-3771 
  "FERD3L MUTATED" "FERD3L WILD-TYPE" "FERD3L WILD-TYPE" "FERD3L WILD-TYPE" 
      TCGA-67-3772       TCGA-67-3773       TCGA-67-3774       TCGA-67-6215 
"FERD3L WILD-TYPE" "FERD3L WILD-TYPE" "FERD3L WILD-TYPE" "FERD3L WILD-TYPE" 
      TCGA-67-6216       TCGA-67-6217       TCGA-71-6725       TCGA-73-4658 
"FERD3L WILD-TYPE" "FERD3L WILD-TYPE" "FERD3L WILD-TYPE" "FERD3L WILD-TYPE" 
      TCGA-73-4659       TCGA-73-4662       TCGA-73-4666       TCGA-73-4668 
"FERD3L WILD-TYPE" "FERD3L WILD-TYPE" "FERD3L WILD-TYPE" "FERD3L WILD-TYPE" 
      TCGA-73-4670       TCGA-73-4675       TCGA-73-4676       TCGA-73-4677 
"FERD3L WILD-TYPE" "FERD3L WILD-TYPE" "FERD3L WILD-TYPE" "FERD3L WILD-TYPE" 
      TCGA-91-6828       TCGA-91-6829       TCGA-91-6831       TCGA-91-6835 
"FERD3L WILD-TYPE" "FERD3L WILD-TYPE" "FERD3L WILD-TYPE" "FERD3L WILD-TYPE" 
      TCGA-91-6836 
"FERD3L WILD-TYPE" 
      TCGA-05-4249       TCGA-05-4250       TCGA-05-4382       TCGA-05-4384 
"FERD3L WILD-TYPE" "FERD3L WILD-TYPE" "FERD3L WILD-TYPE" "FERD3L WILD-TYPE" 
      TCGA-05-4390       TCGA-05-4396       TCGA-05-4397       TCGA-05-4398 
"FERD3L WILD-TYPE" "FERD3L WILD-TYPE" "FERD3L WILD-TYPE" "FERD3L WILD-TYPE" 
      TCGA-05-4402       TCGA-05-4405       TCGA-05-4415       TCGA-05-4417 
"FERD3L WILD-TYPE" "FERD3L WILD-TYPE" "FERD3L WILD-TYPE" "FERD3L WILD-TYPE" 
      TCGA-05-4418       TCGA-05-4420       TCGA-05-4424       TCGA-05-4426 
"FERD3L WILD-TYPE" "FERD3L WILD-TYPE"   "FERD3L MUTATED" "FERD3L WILD-TYPE" 
      TCGA-05-4427       TCGA-05-4430       TCGA-05-4432       TCGA-05-4433 
"FERD3L WILD-TYPE" "FERD3L WILD-TYPE" "FERD3L WILD-TYPE" "FERD3L WILD-TYPE" 
      TCGA-05-4434       TCGA-05-5420       TCGA-05-5423       TCGA-05-5425 
"FERD3L WILD-TYPE" "FERD3L WILD-TYPE" "FERD3L WILD-TYPE" "FERD3L WILD-TYPE" 
      TCGA-05-5429       TCGA-05-5715       TCGA-35-3615       TCGA-35-4122 
"FERD3L WILD-TYPE" "FERD3L WILD-TYPE" "FERD3L WILD-TYPE" "FERD3L WILD-TYPE" 
      TCGA-35-4123       TCGA-35-5375       TCGA-38-4625       TCGA-38-4626 
"FERD3L WILD-TYPE" "FERD3L WILD-TYPE" "FERD3L WILD-TYPE"   "FERD3L MUTATED" 
      TCGA-38-4627       TCGA-38-4628       TCGA-38-4629       TCGA-38-4630 
"FERD3L WILD-TYPE" "FERD3L WILD-TYPE" "FERD3L WILD-TYPE" "FERD3L WILD-TYPE" 
      TCGA-38-4631       TCGA-38-4632       TCGA-38-6178       TCGA-44-2655 
"FERD3L WILD-TYPE" "FERD3L WILD-TYPE" "FERD3L WILD-TYPE" "FERD3L WILD-TYPE" 
      TCGA-44-2656       TCGA-44-2657       TCGA-44-2659       TCGA-44-2661 
"FERD3L WILD-TYPE" "FERD3L WILD-TYPE" "FERD3L WILD-TYPE" "FERD3L WILD-TYPE" 
      TCGA-44-2662       TCGA-44-2665       TCGA-44-2666       TCGA-44-2668 
"FERD3L WILD-TYPE" "FERD3L WILD-TYPE" "FERD3L WILD-TYPE" "FERD3L WILD-TYPE" 
      TCGA-44-3396       TCGA-44-3398       TCGA-44-3918       TCGA-44-3919 
"FERD3L WILD-TYPE" "FERD3L WILD-TYPE" "FERD3L WILD-TYPE" "FERD3L WILD-TYPE" 
      TCGA-44-4112       TCGA-44-5643       TCGA-44-5645       TCGA-44-6144 
"FERD3L WILD-TYPE" "FERD3L WILD-TYPE"   "FERD3L MUTATED" "FERD3L WILD-TYPE" 
      TCGA-44-6145       TCGA-44-6146       TCGA-44-6147       TCGA-44-6148 
"FERD3L WILD-TYPE" "FERD3L WILD-TYPE" "FERD3L WILD-TYPE" "FERD3L WILD-TYPE" 
      TCGA-44-6774       TCGA-44-6775       TCGA-44-6776       TCGA-44-6777 
"FERD3L WILD-TYPE" "FERD3L WILD-TYPE" "FERD3L WILD-TYPE" "FERD3L WILD-TYPE" 
      TCGA-44-6778       TCGA-44-6779       TCGA-49-4486       TCGA-49-4487 
"FERD3L WILD-TYPE" "FERD3L WILD-TYPE" "FERD3L WILD-TYPE" "FERD3L WILD-TYPE" 
      TCGA-49-4488       TCGA-49-4490       TCGA-49-4494       TCGA-49-4501 
"FERD3L WILD-TYPE" "FERD3L WILD-TYPE" "FERD3L WILD-TYPE" "FERD3L WILD-TYPE" 
      TCGA-49-4505       TCGA-49-4506       TCGA-49-4507       TCGA-49-4510 
"FERD3L WILD-TYPE" "FERD3L WILD-TYPE" "FERD3L WILD-TYPE" "FERD3L WILD-TYPE" 
      TCGA-49-4512       TCGA-49-4514       TCGA-49-6742       TCGA-49-6743 
"FERD3L WILD-TYPE" "FERD3L WILD-TYPE" "FERD3L WILD-TYPE" "FERD3L WILD-TYPE" 
      TCGA-49-6744       TCGA-49-6745       TCGA-50-5044       TCGA-50-5045 
"FERD3L WILD-TYPE" "FERD3L WILD-TYPE" "FERD3L WILD-TYPE"   "FERD3L MUTATED" 
      TCGA-50-5049       TCGA-50-5051       TCGA-50-5055       TCGA-50-5066 
"FERD3L WILD-TYPE" "FERD3L WILD-TYPE" "FERD3L WILD-TYPE" "FERD3L WILD-TYPE" 
      TCGA-50-5068       TCGA-50-5072       TCGA-50-5930       TCGA-50-5931 
"FERD3L WILD-TYPE" "FERD3L WILD-TYPE" "FERD3L WILD-TYPE" "FERD3L WILD-TYPE" 
      TCGA-50-5932       TCGA-50-5933       TCGA-50-5935       TCGA-50-5936 
"FERD3L WILD-TYPE"   "FERD3L MUTATED" "FERD3L WILD-TYPE" "FERD3L WILD-TYPE" 
      TCGA-50-5939       TCGA-50-5941       TCGA-50-5942       TCGA-50-5944 
"FERD3L WILD-TYPE" "FERD3L WILD-TYPE" "FERD3L WILD-TYPE" "FERD3L WILD-TYPE" 
      TCGA-50-5946       TCGA-50-6590       TCGA-50-6591       TCGA-50-6592 
"FERD3L WILD-TYPE" "FERD3L WILD-TYPE" "FERD3L WILD-TYPE" "FERD3L WILD-TYPE" 
      TCGA-50-6593       TCGA-50-6594       TCGA-50-6595       TCGA-50-6597 
"FERD3L WILD-TYPE" "FERD3L WILD-TYPE" "FERD3L WILD-TYPE" "FERD3L WILD-TYPE" 
      TCGA-55-1592       TCGA-55-1594       TCGA-55-1595       TCGA-55-1596 
"FERD3L WILD-TYPE" "FERD3L WILD-TYPE" "FERD3L WILD-TYPE" "FERD3L WILD-TYPE" 
      TCGA-55-5899       TCGA-55-6543       TCGA-55-6642       TCGA-55-6712 
"FERD3L WILD-TYPE" "FERD3L WILD-TYPE" "FERD3L WILD-TYPE" "FERD3L WILD-TYPE" 
      TCGA-64-1676       TCGA-64-1677       TCGA-64-1678       TCGA-64-1680 
  "FERD3L MUTATED" "FERD3L WILD-TYPE" "FERD3L WILD-TYPE" "FERD3L WILD-TYPE" 
      TCGA-64-5774       TCGA-64-5775       TCGA-64-5778       TCGA-64-5779 
"FERD3L WILD-TYPE" "FERD3L WILD-TYPE" "FERD3L WILD-TYPE" "FERD3L WILD-TYPE" 
      TCGA-64-5781       TCGA-64-5815       TCGA-67-3770       TCGA-67-3771 
  "FERD3L MUTATED" "FERD3L WILD-TYPE" "FERD3L WILD-TYPE" "FERD3L WILD-TYPE" 
      TCGA-67-3772       TCGA-67-3773       TCGA-67-3774       TCGA-67-6215 
"FERD3L WILD-TYPE" "FERD3L WILD-TYPE" "FERD3L WILD-TYPE" "FERD3L WILD-TYPE" 
      TCGA-67-6216       TCGA-67-6217       TCGA-71-6725       TCGA-73-4658 
"FERD3L WILD-TYPE" "FERD3L WILD-TYPE" "FERD3L WILD-TYPE" "FERD3L WILD-TYPE" 
      TCGA-73-4659       TCGA-73-4662       TCGA-73-4666       TCGA-73-4668 
"FERD3L WILD-TYPE" "FERD3L WILD-TYPE" "FERD3L WILD-TYPE" "FERD3L WILD-TYPE" 
      TCGA-73-4670       TCGA-73-4675       TCGA-73-4676       TCGA-73-4677 
"FERD3L WILD-TYPE" "FERD3L WILD-TYPE" "FERD3L WILD-TYPE" "FERD3L WILD-TYPE" 
      TCGA-91-6828       TCGA-91-6829       TCGA-91-6831       TCGA-91-6835 
"FERD3L WILD-TYPE" "FERD3L WILD-TYPE" "FERD3L WILD-TYPE" "FERD3L WILD-TYPE" 
      TCGA-91-6836 
"FERD3L WILD-TYPE" 
      TCGA-05-4249       TCGA-05-4250       TCGA-05-4382       TCGA-05-4384 
"FERD3L WILD-TYPE" "FERD3L WILD-TYPE" "FERD3L WILD-TYPE" "FERD3L WILD-TYPE" 
      TCGA-05-4390       TCGA-05-4396       TCGA-05-4397       TCGA-05-4398 
"FERD3L WILD-TYPE" "FERD3L WILD-TYPE" "FERD3L WILD-TYPE" "FERD3L WILD-TYPE" 
      TCGA-05-4402       TCGA-05-4405       TCGA-05-4415       TCGA-05-4417 
"FERD3L WILD-TYPE" "FERD3L WILD-TYPE" "FERD3L WILD-TYPE" "FERD3L WILD-TYPE" 
      TCGA-05-4418       TCGA-05-4420       TCGA-05-4424       TCGA-05-4426 
"FERD3L WILD-TYPE" "FERD3L WILD-TYPE"   "FERD3L MUTATED" "FERD3L WILD-TYPE" 
      TCGA-05-4427       TCGA-05-4430       TCGA-05-4432       TCGA-05-4433 
"FERD3L WILD-TYPE" "FERD3L WILD-TYPE" "FERD3L WILD-TYPE" "FERD3L WILD-TYPE" 
      TCGA-05-4434       TCGA-05-5420       TCGA-05-5423       TCGA-05-5425 
"FERD3L WILD-TYPE" "FERD3L WILD-TYPE" "FERD3L WILD-TYPE" "FERD3L WILD-TYPE" 
      TCGA-05-5429       TCGA-05-5715       TCGA-35-3615       TCGA-35-4122 
"FERD3L WILD-TYPE" "FERD3L WILD-TYPE" "FERD3L WILD-TYPE" "FERD3L WILD-TYPE" 
      TCGA-35-4123       TCGA-35-5375       TCGA-38-4625       TCGA-38-4626 
"FERD3L WILD-TYPE" "FERD3L WILD-TYPE" "FERD3L WILD-TYPE"   "FERD3L MUTATED" 
      TCGA-38-4627       TCGA-38-4628       TCGA-38-4629       TCGA-38-4630 
"FERD3L WILD-TYPE" "FERD3L WILD-TYPE" "FERD3L WILD-TYPE" "FERD3L WILD-TYPE" 
      TCGA-38-4631       TCGA-38-4632       TCGA-38-6178       TCGA-44-2655 
"FERD3L WILD-TYPE" "FERD3L WILD-TYPE" "FERD3L WILD-TYPE" "FERD3L WILD-TYPE" 
      TCGA-44-2656       TCGA-44-2657       TCGA-44-2659       TCGA-44-2661 
"FERD3L WILD-TYPE" "FERD3L WILD-TYPE" "FERD3L WILD-TYPE" "FERD3L WILD-TYPE" 
      TCGA-44-2662       TCGA-44-2665       TCGA-44-2666       TCGA-44-2668 
"FERD3L WILD-TYPE" "FERD3L WILD-TYPE" "FERD3L WILD-TYPE" "FERD3L WILD-TYPE" 
      TCGA-44-3396       TCGA-44-3398       TCGA-44-3918       TCGA-44-3919 
"FERD3L WILD-TYPE" "FERD3L WILD-TYPE" "FERD3L WILD-TYPE" "FERD3L WILD-TYPE" 
      TCGA-44-4112       TCGA-44-5643       TCGA-44-5645       TCGA-44-6144 
"FERD3L WILD-TYPE" "FERD3L WILD-TYPE"   "FERD3L MUTATED" "FERD3L WILD-TYPE" 
      TCGA-44-6145       TCGA-44-6146       TCGA-44-6147       TCGA-44-6148 
"FERD3L WILD-TYPE" "FERD3L WILD-TYPE" "FERD3L WILD-TYPE" "FERD3L WILD-TYPE" 
      TCGA-44-6774       TCGA-44-6775       TCGA-44-6776       TCGA-44-6777 
"FERD3L WILD-TYPE" "FERD3L WILD-TYPE" "FERD3L WILD-TYPE" "FERD3L WILD-TYPE" 
      TCGA-44-6778       TCGA-44-6779       TCGA-49-4486       TCGA-49-4487 
"FERD3L WILD-TYPE" "FERD3L WILD-TYPE" "FERD3L WILD-TYPE" "FERD3L WILD-TYPE" 
      TCGA-49-4488       TCGA-49-4490       TCGA-49-4494       TCGA-49-4501 
"FERD3L WILD-TYPE" "FERD3L WILD-TYPE" "FERD3L WILD-TYPE" "FERD3L WILD-TYPE" 
      TCGA-49-4505       TCGA-49-4506       TCGA-49-4507       TCGA-49-4510 
"FERD3L WILD-TYPE" "FERD3L WILD-TYPE" "FERD3L WILD-TYPE" "FERD3L WILD-TYPE" 
      TCGA-49-4512       TCGA-49-4514       TCGA-49-6742       TCGA-49-6743 
"FERD3L WILD-TYPE" "FERD3L WILD-TYPE" "FERD3L WILD-TYPE" "FERD3L WILD-TYPE" 
      TCGA-49-6744       TCGA-49-6745       TCGA-50-5044       TCGA-50-5045 
"FERD3L WILD-TYPE" "FERD3L WILD-TYPE" "FERD3L WILD-TYPE"   "FERD3L MUTATED" 
      TCGA-50-5049       TCGA-50-5051       TCGA-50-5055       TCGA-50-5066 
"FERD3L WILD-TYPE" "FERD3L WILD-TYPE" "FERD3L WILD-TYPE" "FERD3L WILD-TYPE" 
      TCGA-50-5068       TCGA-50-5072       TCGA-50-5930       TCGA-50-5931 
"FERD3L WILD-TYPE" "FERD3L WILD-TYPE" "FERD3L WILD-TYPE" "FERD3L WILD-TYPE" 
      TCGA-50-5932       TCGA-50-5933       TCGA-50-5935       TCGA-50-5936 
"FERD3L WILD-TYPE"   "FERD3L MUTATED" "FERD3L WILD-TYPE" "FERD3L WILD-TYPE" 
      TCGA-50-5939       TCGA-50-5941       TCGA-50-5942       TCGA-50-5944 
"FERD3L WILD-TYPE" "FERD3L WILD-TYPE" "FERD3L WILD-TYPE" "FERD3L WILD-TYPE" 
      TCGA-50-5946       TCGA-50-6590       TCGA-50-6591       TCGA-50-6592 
"FERD3L WILD-TYPE" "FERD3L WILD-TYPE" "FERD3L WILD-TYPE" "FERD3L WILD-TYPE" 
      TCGA-50-6593       TCGA-50-6594       TCGA-50-6595       TCGA-50-6597 
"FERD3L WILD-TYPE" "FERD3L WILD-TYPE" "FERD3L WILD-TYPE" "FERD3L WILD-TYPE" 
      TCGA-55-1592       TCGA-55-1594       TCGA-55-1595       TCGA-55-1596 
"FERD3L WILD-TYPE" "FERD3L WILD-TYPE" "FERD3L WILD-TYPE" "FERD3L WILD-TYPE" 
      TCGA-55-5899       TCGA-55-6543       TCGA-55-6642       TCGA-55-6712 
"FERD3L WILD-TYPE" "FERD3L WILD-TYPE" "FERD3L WILD-TYPE" "FERD3L WILD-TYPE" 
      TCGA-64-1676       TCGA-64-1677       TCGA-64-1678       TCGA-64-1680 
  "FERD3L MUTATED" "FERD3L WILD-TYPE" "FERD3L WILD-TYPE" "FERD3L WILD-TYPE" 
      TCGA-64-5774       TCGA-64-5775       TCGA-64-5778       TCGA-64-5779 
"FERD3L WILD-TYPE" "FERD3L WILD-TYPE" "FERD3L WILD-TYPE" "FERD3L WILD-TYPE" 
      TCGA-64-5781       TCGA-64-5815       TCGA-67-3770       TCGA-67-3771 
  "FERD3L MUTATED" "FERD3L WILD-TYPE" "FERD3L WILD-TYPE" "FERD3L WILD-TYPE" 
      TCGA-67-3772       TCGA-67-3773       TCGA-67-3774       TCGA-67-6215 
"FERD3L WILD-TYPE" "FERD3L WILD-TYPE" "FERD3L WILD-TYPE" "FERD3L WILD-TYPE" 
      TCGA-67-6216       TCGA-67-6217       TCGA-71-6725       TCGA-73-4658 
"FERD3L WILD-TYPE" "FERD3L WILD-TYPE" "FERD3L WILD-TYPE" "FERD3L WILD-TYPE" 
      TCGA-73-4659       TCGA-73-4662       TCGA-73-4666       TCGA-73-4668 
"FERD3L WILD-TYPE" "FERD3L WILD-TYPE" "FERD3L WILD-TYPE" "FERD3L WILD-TYPE" 
      TCGA-73-4670       TCGA-73-4675       TCGA-73-4676       TCGA-73-4677 
"FERD3L WILD-TYPE" "FERD3L WILD-TYPE" "FERD3L WILD-TYPE" "FERD3L WILD-TYPE" 
      TCGA-91-6828       TCGA-91-6829       TCGA-91-6831       TCGA-91-6835 
"FERD3L WILD-TYPE" "FERD3L WILD-TYPE" "FERD3L WILD-TYPE" "FERD3L WILD-TYPE" 
      TCGA-91-6836 
"FERD3L WILD-TYPE" 
[1] "hr=" "5.6"
D43V2, continuous
D43V3, binary
[1] "tbl2"
                  cls
clus               [,1] [,2]
  FERD3L MUTATED      4    3
  FERD3L WILD-TYPE   89   76
        clus
vv       FERD3L MUTATED FERD3L WILD-TYPE
  FEMALE              4               89
  MALE                3               76
D43V4, continuous
D43V5, multiclass
D43V6, multiclass
    clus
vv   FERD3L MUTATED FERD3L WILD-TYPE
  T1              1               40
  T2              3              105
  T3              1               13
  T4              1                7
D43V7, multiclass
       clus
vv      FERD3L MUTATED FERD3L WILD-TYPE
  N0                 4               91
  N1                 1               36
  N2+N3              1               34
D43V8, multiclass
    clus
vv   FERD3L MUTATED FERD3L WILD-TYPE
  M0              6              131
  M1              0                9
  MX              0               22
D43V9, multiclass
     clus
vv    FERD3L MUTATED FERD3L WILD-TYPE
  I                4               84
  II               2               31
  III              1               38
  IV               0                9
D43V10, binary
[1] "tbl2"
                  cls
clus               [,1] [,2]
  FERD3L MUTATED      2    5
  FERD3L WILD-TYPE   14  151
     clus
vv    FERD3L MUTATED FERD3L WILD-TYPE
  NO               2               14
  YES              5              151
D43V11, continuous
D43V12, continuous
D43V13, multiclass
                                             clus
vv                                            FERD3L MUTATED FERD3L WILD-TYPE
  CURRENT REFORMED SMOKER FOR < OR = 15 YEARS              2               60
  CURRENT REFORMED SMOKER FOR > 15 YEARS                   1               45
  CURRENT SMOKER                                           2               26
  LIFELONG NON-SMOKER                                      0               24
D43V14, continuous

Clustering(44) Variable = ZIC4 MUTATION ANALYSIS
D44V1, survival
                sevent
clus2             0  1
  ZIC4 MUTATED    4  6
  ZIC4 WILD-TYPE 95 44
  ZIC4 MUTATED ZIC4 WILD-TYPE 
            10            139 
  ZIC4 MUTATED ZIC4 WILD-TYPE 
             6             44 
$`ZIC4 MUTATED`
TCGA-05-4396 TCGA-05-4420 TCGA-38-4632 TCGA-44-5643 TCGA-49-4486 TCGA-49-6743 
        9.96        29.95        44.61         3.48        76.21        12.13 
TCGA-50-5931 TCGA-55-1592 TCGA-64-5775 TCGA-64-5815 
        8.78        23.05         0.10         7.33 

$`ZIC4 WILD-TYPE`
TCGA-05-4249 TCGA-05-4250 TCGA-05-4382 TCGA-05-4384 TCGA-05-4390 TCGA-05-4397 
       38.07         3.98        19.92        14.01        37.02        24.03 
TCGA-05-4398 TCGA-05-4402 TCGA-05-4405 TCGA-05-4415 TCGA-05-4417 TCGA-05-4418 
       47.05         8.02        20.05         2.96        14.93         8.98 
TCGA-05-4424 TCGA-05-4426 TCGA-05-4427 TCGA-05-4430 TCGA-05-4432 TCGA-05-4433 
       30.02        26.01        26.01        25.02        25.02        24.00 
TCGA-05-4434 TCGA-05-5420 TCGA-05-5423 TCGA-05-5425 TCGA-05-5429 TCGA-05-5715 
       15.02         1.02         4.96         2.96         0.99         2.04 
TCGA-35-3615 TCGA-35-4122 TCGA-35-4123 TCGA-35-5375 TCGA-38-4625 TCGA-38-4626 
        0.46         7.36         5.95         8.68        47.61        85.32 
TCGA-38-4627 TCGA-38-4628 TCGA-38-4629 TCGA-38-4630 TCGA-38-4631 TCGA-38-6178 
       37.71        49.02        28.37        35.28        11.64         5.19 
TCGA-44-2655 TCGA-44-2656 TCGA-44-2657 TCGA-44-2659 TCGA-44-2661 TCGA-44-2662 
       18.87        19.10        13.15        17.39         3.39        15.78 
TCGA-44-2665 TCGA-44-2666 TCGA-44-2668 TCGA-44-3396 TCGA-44-3398 TCGA-44-3918 
       13.15         3.19         8.09        10.22         8.32         6.44 
TCGA-44-3919 TCGA-44-4112 TCGA-44-5645 TCGA-44-6144 TCGA-44-6145 TCGA-44-6146 
        6.21         4.60         6.84         0.30         3.35         9.93 
TCGA-44-6147 TCGA-44-6148 TCGA-44-6774 TCGA-44-6775 TCGA-44-6776 TCGA-44-6777 
        7.76         3.12         5.42         2.70        63.72        32.45 
TCGA-44-6778 TCGA-44-6779 TCGA-49-4487 TCGA-49-4488 TCGA-49-4490 TCGA-49-4494 
       36.49        16.41        28.11        28.57        12.66        35.54 
TCGA-49-4501 TCGA-49-4505 TCGA-49-4506 TCGA-49-4507 TCGA-49-4510 TCGA-49-4512 
       46.72        14.07        32.84         8.81        29.46        29.75 
TCGA-49-4514 TCGA-49-6742 TCGA-49-6744 TCGA-49-6745 TCGA-50-5044 TCGA-50-5045 
       43.20        15.02        12.99         4.93        20.48        71.47 
TCGA-50-5049 TCGA-50-5051 TCGA-50-5055 TCGA-50-5066 TCGA-50-5068 TCGA-50-5072 
       48.82        14.96        25.81         9.76        49.28         8.05 
TCGA-50-5930 TCGA-50-5932 TCGA-50-5933 TCGA-50-5935 TCGA-50-5936 TCGA-50-5939 
        9.27        35.87        77.88        21.47         8.45        15.12 
TCGA-50-5941 TCGA-50-5942 TCGA-50-5944 TCGA-50-5946 TCGA-50-6590 TCGA-50-6591 
        9.37         4.44        12.26        11.47        42.31         3.88 
TCGA-50-6592 TCGA-50-6593 TCGA-50-6594 TCGA-50-6595 TCGA-50-6597 TCGA-55-1594 
       25.51        11.05        12.16         6.21        33.37        38.73 
TCGA-55-1595 TCGA-55-1596 TCGA-55-5899 TCGA-55-6543 TCGA-55-6642 TCGA-55-6712 
       48.62        45.17         2.86         0.07        32.61         0.79 
TCGA-64-1676 TCGA-64-1677 TCGA-64-1678 TCGA-64-1680 TCGA-64-5774 TCGA-64-5778 
       56.81        20.65        39.09        37.02        83.84        30.44 
TCGA-64-5779 TCGA-64-5781 TCGA-67-3770 TCGA-67-3771 TCGA-67-3772 TCGA-67-3773 
       16.67        39.52         0.99         1.97         0.59         2.04 
TCGA-67-3774 TCGA-67-6215 TCGA-67-6216 TCGA-67-6217 TCGA-71-6725 TCGA-73-4658 
        0.59         0.89         0.69        13.87         2.01        52.57 
TCGA-73-4659 TCGA-73-4662 TCGA-73-4666 TCGA-73-4668 TCGA-73-4670 TCGA-73-4675 
       23.38        29.95        20.28        15.35         0.46         1.32 
TCGA-73-4676 TCGA-73-4677 TCGA-91-6828 TCGA-91-6829 TCGA-91-6831 TCGA-91-6835 
        4.01         1.25         1.22        41.33         1.28         1.15 
TCGA-91-6836 
        0.36 

  ZIC4 MUTATED ZIC4 WILD-TYPE 
          0.10           0.07 
  ZIC4 MUTATED ZIC4 WILD-TYPE 
         76.21          85.32 
  ZIC4 MUTATED ZIC4 WILD-TYPE 
        11.045         14.010 
[1] "0.1 - 76.2 (11.0)" "0.1 - 85.3 (14.0)"
    TCGA-05-4249     TCGA-05-4250     TCGA-05-4382     TCGA-05-4384 
"ZIC4 WILD-TYPE" "ZIC4 WILD-TYPE" "ZIC4 WILD-TYPE" "ZIC4 WILD-TYPE" 
    TCGA-05-4390     TCGA-05-4396     TCGA-05-4397     TCGA-05-4398 
"ZIC4 WILD-TYPE"   "ZIC4 MUTATED" "ZIC4 WILD-TYPE" "ZIC4 WILD-TYPE" 
    TCGA-05-4402     TCGA-05-4405     TCGA-05-4415     TCGA-05-4417 
"ZIC4 WILD-TYPE" "ZIC4 WILD-TYPE" "ZIC4 WILD-TYPE" "ZIC4 WILD-TYPE" 
    TCGA-05-4418     TCGA-05-4420     TCGA-05-4424     TCGA-05-4426 
"ZIC4 WILD-TYPE"   "ZIC4 MUTATED" "ZIC4 WILD-TYPE" "ZIC4 WILD-TYPE" 
    TCGA-05-4427     TCGA-05-4430     TCGA-05-4432     TCGA-05-4433 
"ZIC4 WILD-TYPE" "ZIC4 WILD-TYPE" "ZIC4 WILD-TYPE" "ZIC4 WILD-TYPE" 
    TCGA-05-4434     TCGA-05-5420     TCGA-05-5423     TCGA-05-5425 
"ZIC4 WILD-TYPE" "ZIC4 WILD-TYPE" "ZIC4 WILD-TYPE" "ZIC4 WILD-TYPE" 
    TCGA-05-5429     TCGA-05-5715     TCGA-35-3615     TCGA-35-4122 
"ZIC4 WILD-TYPE" "ZIC4 WILD-TYPE" "ZIC4 WILD-TYPE" "ZIC4 WILD-TYPE" 
    TCGA-35-4123     TCGA-35-5375     TCGA-38-4625     TCGA-38-4626 
"ZIC4 WILD-TYPE" "ZIC4 WILD-TYPE" "ZIC4 WILD-TYPE" "ZIC4 WILD-TYPE" 
    TCGA-38-4627     TCGA-38-4628     TCGA-38-4629     TCGA-38-4630 
"ZIC4 WILD-TYPE" "ZIC4 WILD-TYPE" "ZIC4 WILD-TYPE" "ZIC4 WILD-TYPE" 
    TCGA-38-4631     TCGA-38-4632     TCGA-38-6178     TCGA-44-2655 
"ZIC4 WILD-TYPE"   "ZIC4 MUTATED" "ZIC4 WILD-TYPE" "ZIC4 WILD-TYPE" 
    TCGA-44-2656     TCGA-44-2657     TCGA-44-2659     TCGA-44-2661 
"ZIC4 WILD-TYPE" "ZIC4 WILD-TYPE" "ZIC4 WILD-TYPE" "ZIC4 WILD-TYPE" 
    TCGA-44-2662     TCGA-44-2665     TCGA-44-2666     TCGA-44-2668 
"ZIC4 WILD-TYPE" "ZIC4 WILD-TYPE" "ZIC4 WILD-TYPE" "ZIC4 WILD-TYPE" 
    TCGA-44-3396     TCGA-44-3398     TCGA-44-3918     TCGA-44-3919 
"ZIC4 WILD-TYPE" "ZIC4 WILD-TYPE" "ZIC4 WILD-TYPE" "ZIC4 WILD-TYPE" 
    TCGA-44-4112     TCGA-44-5643     TCGA-44-5645     TCGA-44-6144 
"ZIC4 WILD-TYPE"   "ZIC4 MUTATED" "ZIC4 WILD-TYPE" "ZIC4 WILD-TYPE" 
    TCGA-44-6145     TCGA-44-6146     TCGA-44-6147     TCGA-44-6148 
"ZIC4 WILD-TYPE" "ZIC4 WILD-TYPE" "ZIC4 WILD-TYPE" "ZIC4 WILD-TYPE" 
    TCGA-44-6774     TCGA-44-6775     TCGA-44-6776     TCGA-44-6777 
"ZIC4 WILD-TYPE" "ZIC4 WILD-TYPE" "ZIC4 WILD-TYPE" "ZIC4 WILD-TYPE" 
    TCGA-44-6778     TCGA-44-6779     TCGA-49-4486     TCGA-49-4487 
"ZIC4 WILD-TYPE" "ZIC4 WILD-TYPE"   "ZIC4 MUTATED" "ZIC4 WILD-TYPE" 
    TCGA-49-4488     TCGA-49-4490     TCGA-49-4494     TCGA-49-4501 
"ZIC4 WILD-TYPE" "ZIC4 WILD-TYPE" "ZIC4 WILD-TYPE" "ZIC4 WILD-TYPE" 
    TCGA-49-4505     TCGA-49-4506     TCGA-49-4507     TCGA-49-4510 
"ZIC4 WILD-TYPE" "ZIC4 WILD-TYPE" "ZIC4 WILD-TYPE" "ZIC4 WILD-TYPE" 
    TCGA-49-4512     TCGA-49-4514     TCGA-49-6742     TCGA-49-6743 
"ZIC4 WILD-TYPE" "ZIC4 WILD-TYPE" "ZIC4 WILD-TYPE"   "ZIC4 MUTATED" 
    TCGA-49-6744     TCGA-49-6745     TCGA-50-5044     TCGA-50-5045 
"ZIC4 WILD-TYPE" "ZIC4 WILD-TYPE" "ZIC4 WILD-TYPE" "ZIC4 WILD-TYPE" 
    TCGA-50-5049     TCGA-50-5051     TCGA-50-5055     TCGA-50-5066 
"ZIC4 WILD-TYPE" "ZIC4 WILD-TYPE" "ZIC4 WILD-TYPE" "ZIC4 WILD-TYPE" 
    TCGA-50-5068     TCGA-50-5072     TCGA-50-5930     TCGA-50-5931 
"ZIC4 WILD-TYPE" "ZIC4 WILD-TYPE" "ZIC4 WILD-TYPE"   "ZIC4 MUTATED" 
    TCGA-50-5932     TCGA-50-5933     TCGA-50-5935     TCGA-50-5936 
"ZIC4 WILD-TYPE" "ZIC4 WILD-TYPE" "ZIC4 WILD-TYPE" "ZIC4 WILD-TYPE" 
    TCGA-50-5939     TCGA-50-5941     TCGA-50-5942     TCGA-50-5944 
"ZIC4 WILD-TYPE" "ZIC4 WILD-TYPE" "ZIC4 WILD-TYPE" "ZIC4 WILD-TYPE" 
    TCGA-50-5946     TCGA-50-6590     TCGA-50-6591     TCGA-50-6592 
"ZIC4 WILD-TYPE" "ZIC4 WILD-TYPE" "ZIC4 WILD-TYPE" "ZIC4 WILD-TYPE" 
    TCGA-50-6593     TCGA-50-6594     TCGA-50-6595     TCGA-50-6597 
"ZIC4 WILD-TYPE" "ZIC4 WILD-TYPE" "ZIC4 WILD-TYPE" "ZIC4 WILD-TYPE" 
    TCGA-55-1592     TCGA-55-1594     TCGA-55-1595     TCGA-55-1596 
  "ZIC4 MUTATED" "ZIC4 WILD-TYPE" "ZIC4 WILD-TYPE" "ZIC4 WILD-TYPE" 
    TCGA-55-5899     TCGA-55-6543     TCGA-55-6642     TCGA-55-6712 
"ZIC4 WILD-TYPE" "ZIC4 WILD-TYPE" "ZIC4 WILD-TYPE" "ZIC4 WILD-TYPE" 
    TCGA-64-1676     TCGA-64-1677     TCGA-64-1678     TCGA-64-1680 
"ZIC4 WILD-TYPE" "ZIC4 WILD-TYPE" "ZIC4 WILD-TYPE" "ZIC4 WILD-TYPE" 
    TCGA-64-5774     TCGA-64-5775     TCGA-64-5778     TCGA-64-5779 
"ZIC4 WILD-TYPE"   "ZIC4 MUTATED" "ZIC4 WILD-TYPE" "ZIC4 WILD-TYPE" 
    TCGA-64-5781     TCGA-64-5815     TCGA-67-3770     TCGA-67-3771 
"ZIC4 WILD-TYPE"   "ZIC4 MUTATED" "ZIC4 WILD-TYPE" "ZIC4 WILD-TYPE" 
    TCGA-67-3772     TCGA-67-3773     TCGA-67-3774     TCGA-67-6215 
"ZIC4 WILD-TYPE" "ZIC4 WILD-TYPE" "ZIC4 WILD-TYPE" "ZIC4 WILD-TYPE" 
    TCGA-67-6216     TCGA-67-6217     TCGA-71-6725     TCGA-73-4658 
"ZIC4 WILD-TYPE" "ZIC4 WILD-TYPE" "ZIC4 WILD-TYPE" "ZIC4 WILD-TYPE" 
    TCGA-73-4659     TCGA-73-4662     TCGA-73-4666     TCGA-73-4668 
"ZIC4 WILD-TYPE" "ZIC4 WILD-TYPE" "ZIC4 WILD-TYPE" "ZIC4 WILD-TYPE" 
    TCGA-73-4670     TCGA-73-4675     TCGA-73-4676     TCGA-73-4677 
"ZIC4 WILD-TYPE" "ZIC4 WILD-TYPE" "ZIC4 WILD-TYPE" "ZIC4 WILD-TYPE" 
    TCGA-91-6828     TCGA-91-6829     TCGA-91-6831     TCGA-91-6835 
"ZIC4 WILD-TYPE" "ZIC4 WILD-TYPE" "ZIC4 WILD-TYPE" "ZIC4 WILD-TYPE" 
    TCGA-91-6836 
"ZIC4 WILD-TYPE" 
    TCGA-05-4249     TCGA-05-4250     TCGA-05-4382     TCGA-05-4384 
"ZIC4 WILD-TYPE" "ZIC4 WILD-TYPE" "ZIC4 WILD-TYPE" "ZIC4 WILD-TYPE" 
    TCGA-05-4390     TCGA-05-4396     TCGA-05-4397     TCGA-05-4398 
"ZIC4 WILD-TYPE"   "ZIC4 MUTATED" "ZIC4 WILD-TYPE" "ZIC4 WILD-TYPE" 
    TCGA-05-4402     TCGA-05-4405     TCGA-05-4415     TCGA-05-4417 
"ZIC4 WILD-TYPE" "ZIC4 WILD-TYPE" "ZIC4 WILD-TYPE" "ZIC4 WILD-TYPE" 
    TCGA-05-4418     TCGA-05-4420     TCGA-05-4424     TCGA-05-4426 
"ZIC4 WILD-TYPE"   "ZIC4 MUTATED" "ZIC4 WILD-TYPE" "ZIC4 WILD-TYPE" 
    TCGA-05-4427     TCGA-05-4430     TCGA-05-4432     TCGA-05-4433 
"ZIC4 WILD-TYPE" "ZIC4 WILD-TYPE" "ZIC4 WILD-TYPE" "ZIC4 WILD-TYPE" 
    TCGA-05-4434     TCGA-05-5420     TCGA-05-5423     TCGA-05-5425 
"ZIC4 WILD-TYPE" "ZIC4 WILD-TYPE" "ZIC4 WILD-TYPE" "ZIC4 WILD-TYPE" 
    TCGA-05-5429     TCGA-05-5715     TCGA-35-3615     TCGA-35-4122 
"ZIC4 WILD-TYPE" "ZIC4 WILD-TYPE" "ZIC4 WILD-TYPE" "ZIC4 WILD-TYPE" 
    TCGA-35-4123     TCGA-35-5375     TCGA-38-4625     TCGA-38-4626 
"ZIC4 WILD-TYPE" "ZIC4 WILD-TYPE" "ZIC4 WILD-TYPE" "ZIC4 WILD-TYPE" 
    TCGA-38-4627     TCGA-38-4628     TCGA-38-4629     TCGA-38-4630 
"ZIC4 WILD-TYPE" "ZIC4 WILD-TYPE" "ZIC4 WILD-TYPE" "ZIC4 WILD-TYPE" 
    TCGA-38-4631     TCGA-38-4632     TCGA-38-6178     TCGA-44-2655 
"ZIC4 WILD-TYPE"   "ZIC4 MUTATED" "ZIC4 WILD-TYPE" "ZIC4 WILD-TYPE" 
    TCGA-44-2656     TCGA-44-2657     TCGA-44-2659     TCGA-44-2661 
"ZIC4 WILD-TYPE" "ZIC4 WILD-TYPE" "ZIC4 WILD-TYPE" "ZIC4 WILD-TYPE" 
    TCGA-44-2662     TCGA-44-2665     TCGA-44-2666     TCGA-44-2668 
"ZIC4 WILD-TYPE" "ZIC4 WILD-TYPE" "ZIC4 WILD-TYPE" "ZIC4 WILD-TYPE" 
    TCGA-44-3396     TCGA-44-3398     TCGA-44-3918     TCGA-44-3919 
"ZIC4 WILD-TYPE" "ZIC4 WILD-TYPE" "ZIC4 WILD-TYPE" "ZIC4 WILD-TYPE" 
    TCGA-44-4112     TCGA-44-5643     TCGA-44-5645     TCGA-44-6144 
"ZIC4 WILD-TYPE"   "ZIC4 MUTATED" "ZIC4 WILD-TYPE" "ZIC4 WILD-TYPE" 
    TCGA-44-6145     TCGA-44-6146     TCGA-44-6147     TCGA-44-6148 
"ZIC4 WILD-TYPE" "ZIC4 WILD-TYPE" "ZIC4 WILD-TYPE" "ZIC4 WILD-TYPE" 
    TCGA-44-6774     TCGA-44-6775     TCGA-44-6776     TCGA-44-6777 
"ZIC4 WILD-TYPE" "ZIC4 WILD-TYPE" "ZIC4 WILD-TYPE" "ZIC4 WILD-TYPE" 
    TCGA-44-6778     TCGA-44-6779     TCGA-49-4486     TCGA-49-4487 
"ZIC4 WILD-TYPE" "ZIC4 WILD-TYPE"   "ZIC4 MUTATED" "ZIC4 WILD-TYPE" 
    TCGA-49-4488     TCGA-49-4490     TCGA-49-4494     TCGA-49-4501 
"ZIC4 WILD-TYPE" "ZIC4 WILD-TYPE" "ZIC4 WILD-TYPE" "ZIC4 WILD-TYPE" 
    TCGA-49-4505     TCGA-49-4506     TCGA-49-4507     TCGA-49-4510 
"ZIC4 WILD-TYPE" "ZIC4 WILD-TYPE" "ZIC4 WILD-TYPE" "ZIC4 WILD-TYPE" 
    TCGA-49-4512     TCGA-49-4514     TCGA-49-6742     TCGA-49-6743 
"ZIC4 WILD-TYPE" "ZIC4 WILD-TYPE" "ZIC4 WILD-TYPE"   "ZIC4 MUTATED" 
    TCGA-49-6744     TCGA-49-6745     TCGA-50-5044     TCGA-50-5045 
"ZIC4 WILD-TYPE" "ZIC4 WILD-TYPE" "ZIC4 WILD-TYPE" "ZIC4 WILD-TYPE" 
    TCGA-50-5049     TCGA-50-5051     TCGA-50-5055     TCGA-50-5066 
"ZIC4 WILD-TYPE" "ZIC4 WILD-TYPE" "ZIC4 WILD-TYPE" "ZIC4 WILD-TYPE" 
    TCGA-50-5068     TCGA-50-5072     TCGA-50-5930     TCGA-50-5931 
"ZIC4 WILD-TYPE" "ZIC4 WILD-TYPE" "ZIC4 WILD-TYPE"   "ZIC4 MUTATED" 
    TCGA-50-5932     TCGA-50-5933     TCGA-50-5935     TCGA-50-5936 
"ZIC4 WILD-TYPE" "ZIC4 WILD-TYPE" "ZIC4 WILD-TYPE" "ZIC4 WILD-TYPE" 
    TCGA-50-5939     TCGA-50-5941     TCGA-50-5942     TCGA-50-5944 
"ZIC4 WILD-TYPE" "ZIC4 WILD-TYPE" "ZIC4 WILD-TYPE" "ZIC4 WILD-TYPE" 
    TCGA-50-5946     TCGA-50-6590     TCGA-50-6591     TCGA-50-6592 
"ZIC4 WILD-TYPE" "ZIC4 WILD-TYPE" "ZIC4 WILD-TYPE" "ZIC4 WILD-TYPE" 
    TCGA-50-6593     TCGA-50-6594     TCGA-50-6595     TCGA-50-6597 
"ZIC4 WILD-TYPE" "ZIC4 WILD-TYPE" "ZIC4 WILD-TYPE" "ZIC4 WILD-TYPE" 
    TCGA-55-1592     TCGA-55-1594     TCGA-55-1595     TCGA-55-1596 
  "ZIC4 MUTATED" "ZIC4 WILD-TYPE" "ZIC4 WILD-TYPE" "ZIC4 WILD-TYPE" 
    TCGA-55-5899     TCGA-55-6543     TCGA-55-6642     TCGA-55-6712 
"ZIC4 WILD-TYPE" "ZIC4 WILD-TYPE" "ZIC4 WILD-TYPE" "ZIC4 WILD-TYPE" 
    TCGA-64-1676     TCGA-64-1677     TCGA-64-1678     TCGA-64-1680 
"ZIC4 WILD-TYPE" "ZIC4 WILD-TYPE" "ZIC4 WILD-TYPE" "ZIC4 WILD-TYPE" 
    TCGA-64-5774     TCGA-64-5775     TCGA-64-5778     TCGA-64-5779 
"ZIC4 WILD-TYPE"   "ZIC4 MUTATED" "ZIC4 WILD-TYPE" "ZIC4 WILD-TYPE" 
    TCGA-64-5781     TCGA-64-5815     TCGA-67-3770     TCGA-67-3771 
"ZIC4 WILD-TYPE"   "ZIC4 MUTATED" "ZIC4 WILD-TYPE" "ZIC4 WILD-TYPE" 
    TCGA-67-3772     TCGA-67-3773     TCGA-67-3774     TCGA-67-6215 
"ZIC4 WILD-TYPE" "ZIC4 WILD-TYPE" "ZIC4 WILD-TYPE" "ZIC4 WILD-TYPE" 
    TCGA-67-6216     TCGA-67-6217     TCGA-71-6725     TCGA-73-4658 
"ZIC4 WILD-TYPE" "ZIC4 WILD-TYPE" "ZIC4 WILD-TYPE" "ZIC4 WILD-TYPE" 
    TCGA-73-4659     TCGA-73-4662     TCGA-73-4666     TCGA-73-4668 
"ZIC4 WILD-TYPE" "ZIC4 WILD-TYPE" "ZIC4 WILD-TYPE" "ZIC4 WILD-TYPE" 
    TCGA-73-4670     TCGA-73-4675     TCGA-73-4676     TCGA-73-4677 
"ZIC4 WILD-TYPE" "ZIC4 WILD-TYPE" "ZIC4 WILD-TYPE" "ZIC4 WILD-TYPE" 
    TCGA-91-6828     TCGA-91-6829     TCGA-91-6831     TCGA-91-6835 
"ZIC4 WILD-TYPE" "ZIC4 WILD-TYPE" "ZIC4 WILD-TYPE" "ZIC4 WILD-TYPE" 
    TCGA-91-6836 
"ZIC4 WILD-TYPE" 
    TCGA-05-4249     TCGA-05-4250     TCGA-05-4382     TCGA-05-4384 
"ZIC4 WILD-TYPE" "ZIC4 WILD-TYPE" "ZIC4 WILD-TYPE" "ZIC4 WILD-TYPE" 
    TCGA-05-4390     TCGA-05-4396     TCGA-05-4397     TCGA-05-4398 
"ZIC4 WILD-TYPE"   "ZIC4 MUTATED" "ZIC4 WILD-TYPE" "ZIC4 WILD-TYPE" 
    TCGA-05-4402     TCGA-05-4405     TCGA-05-4415     TCGA-05-4417 
"ZIC4 WILD-TYPE" "ZIC4 WILD-TYPE" "ZIC4 WILD-TYPE" "ZIC4 WILD-TYPE" 
    TCGA-05-4418     TCGA-05-4420     TCGA-05-4424     TCGA-05-4426 
"ZIC4 WILD-TYPE"   "ZIC4 MUTATED" "ZIC4 WILD-TYPE" "ZIC4 WILD-TYPE" 
    TCGA-05-4427     TCGA-05-4430     TCGA-05-4432     TCGA-05-4433 
"ZIC4 WILD-TYPE" "ZIC4 WILD-TYPE" "ZIC4 WILD-TYPE" "ZIC4 WILD-TYPE" 
    TCGA-05-4434     TCGA-05-5420     TCGA-05-5423     TCGA-05-5425 
"ZIC4 WILD-TYPE" "ZIC4 WILD-TYPE" "ZIC4 WILD-TYPE" "ZIC4 WILD-TYPE" 
    TCGA-05-5429     TCGA-05-5715     TCGA-35-3615     TCGA-35-4122 
"ZIC4 WILD-TYPE" "ZIC4 WILD-TYPE" "ZIC4 WILD-TYPE" "ZIC4 WILD-TYPE" 
    TCGA-35-4123     TCGA-35-5375     TCGA-38-4625     TCGA-38-4626 
"ZIC4 WILD-TYPE" "ZIC4 WILD-TYPE" "ZIC4 WILD-TYPE" "ZIC4 WILD-TYPE" 
    TCGA-38-4627     TCGA-38-4628     TCGA-38-4629     TCGA-38-4630 
"ZIC4 WILD-TYPE" "ZIC4 WILD-TYPE" "ZIC4 WILD-TYPE" "ZIC4 WILD-TYPE" 
    TCGA-38-4631     TCGA-38-4632     TCGA-38-6178     TCGA-44-2655 
"ZIC4 WILD-TYPE"   "ZIC4 MUTATED" "ZIC4 WILD-TYPE" "ZIC4 WILD-TYPE" 
    TCGA-44-2656     TCGA-44-2657     TCGA-44-2659     TCGA-44-2661 
"ZIC4 WILD-TYPE" "ZIC4 WILD-TYPE" "ZIC4 WILD-TYPE" "ZIC4 WILD-TYPE" 
    TCGA-44-2662     TCGA-44-2665     TCGA-44-2666     TCGA-44-2668 
"ZIC4 WILD-TYPE" "ZIC4 WILD-TYPE" "ZIC4 WILD-TYPE" "ZIC4 WILD-TYPE" 
    TCGA-44-3396     TCGA-44-3398     TCGA-44-3918     TCGA-44-3919 
"ZIC4 WILD-TYPE" "ZIC4 WILD-TYPE" "ZIC4 WILD-TYPE" "ZIC4 WILD-TYPE" 
    TCGA-44-4112     TCGA-44-5643     TCGA-44-5645     TCGA-44-6144 
"ZIC4 WILD-TYPE"   "ZIC4 MUTATED" "ZIC4 WILD-TYPE" "ZIC4 WILD-TYPE" 
    TCGA-44-6145     TCGA-44-6146     TCGA-44-6147     TCGA-44-6148 
"ZIC4 WILD-TYPE" "ZIC4 WILD-TYPE" "ZIC4 WILD-TYPE" "ZIC4 WILD-TYPE" 
    TCGA-44-6774     TCGA-44-6775     TCGA-44-6776     TCGA-44-6777 
"ZIC4 WILD-TYPE" "ZIC4 WILD-TYPE" "ZIC4 WILD-TYPE" "ZIC4 WILD-TYPE" 
    TCGA-44-6778     TCGA-44-6779     TCGA-49-4486     TCGA-49-4487 
"ZIC4 WILD-TYPE" "ZIC4 WILD-TYPE"   "ZIC4 MUTATED" "ZIC4 WILD-TYPE" 
    TCGA-49-4488     TCGA-49-4490     TCGA-49-4494     TCGA-49-4501 
"ZIC4 WILD-TYPE" "ZIC4 WILD-TYPE" "ZIC4 WILD-TYPE" "ZIC4 WILD-TYPE" 
    TCGA-49-4505     TCGA-49-4506     TCGA-49-4507     TCGA-49-4510 
"ZIC4 WILD-TYPE" "ZIC4 WILD-TYPE" "ZIC4 WILD-TYPE" "ZIC4 WILD-TYPE" 
    TCGA-49-4512     TCGA-49-4514     TCGA-49-6742     TCGA-49-6743 
"ZIC4 WILD-TYPE" "ZIC4 WILD-TYPE" "ZIC4 WILD-TYPE"   "ZIC4 MUTATED" 
    TCGA-49-6744     TCGA-49-6745     TCGA-50-5044     TCGA-50-5045 
"ZIC4 WILD-TYPE" "ZIC4 WILD-TYPE" "ZIC4 WILD-TYPE" "ZIC4 WILD-TYPE" 
    TCGA-50-5049     TCGA-50-5051     TCGA-50-5055     TCGA-50-5066 
"ZIC4 WILD-TYPE" "ZIC4 WILD-TYPE" "ZIC4 WILD-TYPE" "ZIC4 WILD-TYPE" 
    TCGA-50-5068     TCGA-50-5072     TCGA-50-5930     TCGA-50-5931 
"ZIC4 WILD-TYPE" "ZIC4 WILD-TYPE" "ZIC4 WILD-TYPE"   "ZIC4 MUTATED" 
    TCGA-50-5932     TCGA-50-5933     TCGA-50-5935     TCGA-50-5936 
"ZIC4 WILD-TYPE" "ZIC4 WILD-TYPE" "ZIC4 WILD-TYPE" "ZIC4 WILD-TYPE" 
    TCGA-50-5939     TCGA-50-5941     TCGA-50-5942     TCGA-50-5944 
"ZIC4 WILD-TYPE" "ZIC4 WILD-TYPE" "ZIC4 WILD-TYPE" "ZIC4 WILD-TYPE" 
    TCGA-50-5946     TCGA-50-6590     TCGA-50-6591     TCGA-50-6592 
"ZIC4 WILD-TYPE" "ZIC4 WILD-TYPE" "ZIC4 WILD-TYPE" "ZIC4 WILD-TYPE" 
    TCGA-50-6593     TCGA-50-6594     TCGA-50-6595     TCGA-50-6597 
"ZIC4 WILD-TYPE" "ZIC4 WILD-TYPE" "ZIC4 WILD-TYPE" "ZIC4 WILD-TYPE" 
    TCGA-55-1592     TCGA-55-1594     TCGA-55-1595     TCGA-55-1596 
  "ZIC4 MUTATED" "ZIC4 WILD-TYPE" "ZIC4 WILD-TYPE" "ZIC4 WILD-TYPE" 
    TCGA-55-5899     TCGA-55-6543     TCGA-55-6642     TCGA-55-6712 
"ZIC4 WILD-TYPE" "ZIC4 WILD-TYPE" "ZIC4 WILD-TYPE" "ZIC4 WILD-TYPE" 
    TCGA-64-1676     TCGA-64-1677     TCGA-64-1678     TCGA-64-1680 
"ZIC4 WILD-TYPE" "ZIC4 WILD-TYPE" "ZIC4 WILD-TYPE" "ZIC4 WILD-TYPE" 
    TCGA-64-5774     TCGA-64-5775     TCGA-64-5778     TCGA-64-5779 
"ZIC4 WILD-TYPE"   "ZIC4 MUTATED" "ZIC4 WILD-TYPE" "ZIC4 WILD-TYPE" 
    TCGA-64-5781     TCGA-64-5815     TCGA-67-3770     TCGA-67-3771 
"ZIC4 WILD-TYPE"   "ZIC4 MUTATED" "ZIC4 WILD-TYPE" "ZIC4 WILD-TYPE" 
    TCGA-67-3772     TCGA-67-3773     TCGA-67-3774     TCGA-67-6215 
"ZIC4 WILD-TYPE" "ZIC4 WILD-TYPE" "ZIC4 WILD-TYPE" "ZIC4 WILD-TYPE" 
    TCGA-67-6216     TCGA-67-6217     TCGA-71-6725     TCGA-73-4658 
"ZIC4 WILD-TYPE" "ZIC4 WILD-TYPE" "ZIC4 WILD-TYPE" "ZIC4 WILD-TYPE" 
    TCGA-73-4659     TCGA-73-4662     TCGA-73-4666     TCGA-73-4668 
"ZIC4 WILD-TYPE" "ZIC4 WILD-TYPE" "ZIC4 WILD-TYPE" "ZIC4 WILD-TYPE" 
    TCGA-73-4670     TCGA-73-4675     TCGA-73-4676     TCGA-73-4677 
"ZIC4 WILD-TYPE" "ZIC4 WILD-TYPE" "ZIC4 WILD-TYPE" "ZIC4 WILD-TYPE" 
    TCGA-91-6828     TCGA-91-6829     TCGA-91-6831     TCGA-91-6835 
"ZIC4 WILD-TYPE" "ZIC4 WILD-TYPE" "ZIC4 WILD-TYPE" "ZIC4 WILD-TYPE" 
    TCGA-91-6836 
"ZIC4 WILD-TYPE" 
[1] "hr=" "1.7"
D44V2, continuous
D44V3, binary
[1] "tbl2"
                cls
clus             [,1] [,2]
  ZIC4 MUTATED      3   10
  ZIC4 WILD-TYPE   90   69
        clus
vv       ZIC4 MUTATED ZIC4 WILD-TYPE
  FEMALE            3             90
  MALE             10             69
D44V4, continuous
D44V5, multiclass
D44V6, multiclass
    clus
vv   ZIC4 MUTATED ZIC4 WILD-TYPE
  T1            2             39
  T2            8            100
  T3            1             13
  T4            2              6
D44V7, multiclass
       clus
vv      ZIC4 MUTATED ZIC4 WILD-TYPE
  N0               7             88
  N1               3             34
  N2+N3            3             32
D44V8, multiclass
    clus
vv   ZIC4 MUTATED ZIC4 WILD-TYPE
  M0            9            128
  M1            2              7
  MX            2             20
D44V9, multiclass
     clus
vv    ZIC4 MUTATED ZIC4 WILD-TYPE
  I              5             83
  II             2             31
  III            4             35
  IV             2              7
D44V10, binary
[1] "tbl2"
                cls
clus             [,1] [,2]
  ZIC4 MUTATED      1   12
  ZIC4 WILD-TYPE   15  144
     clus
vv    ZIC4 MUTATED ZIC4 WILD-TYPE
  NO             1             15
  YES           12            144
D44V11, continuous
D44V12, continuous
D44V13, multiclass
                                             clus
vv                                            ZIC4 MUTATED ZIC4 WILD-TYPE
  CURRENT REFORMED SMOKER FOR < OR = 15 YEARS            5             57
  CURRENT REFORMED SMOKER FOR > 15 YEARS                 3             43
  CURRENT SMOKER                                         4             24
  LIFELONG NON-SMOKER                                    0             24
D44V14, continuous

Clustering(45) Variable = ZNF492 MUTATION ANALYSIS
D45V1, survival
                  sevent
clus2               0  1
  ZNF492 MUTATED    4  2
  ZNF492 WILD-TYPE 95 48
  ZNF492 MUTATED ZNF492 WILD-TYPE 
               6              143 
  ZNF492 MUTATED ZNF492 WILD-TYPE 
               2               48 
$`ZNF492 MUTATED`
TCGA-05-4430 TCGA-38-4625 TCGA-44-6777 TCGA-50-5049 TCGA-50-6593 TCGA-73-4670 
       25.02        47.61        32.45        48.82        11.05         0.46 

$`ZNF492 WILD-TYPE`
TCGA-05-4249 TCGA-05-4250 TCGA-05-4382 TCGA-05-4384 TCGA-05-4390 TCGA-05-4396 
       38.07         3.98        19.92        14.01        37.02         9.96 
TCGA-05-4397 TCGA-05-4398 TCGA-05-4402 TCGA-05-4405 TCGA-05-4415 TCGA-05-4417 
       24.03        47.05         8.02        20.05         2.96        14.93 
TCGA-05-4418 TCGA-05-4420 TCGA-05-4424 TCGA-05-4426 TCGA-05-4427 TCGA-05-4432 
        8.98        29.95        30.02        26.01        26.01        25.02 
TCGA-05-4433 TCGA-05-4434 TCGA-05-5420 TCGA-05-5423 TCGA-05-5425 TCGA-05-5429 
       24.00        15.02         1.02         4.96         2.96         0.99 
TCGA-05-5715 TCGA-35-3615 TCGA-35-4122 TCGA-35-4123 TCGA-35-5375 TCGA-38-4626 
        2.04         0.46         7.36         5.95         8.68        85.32 
TCGA-38-4627 TCGA-38-4628 TCGA-38-4629 TCGA-38-4630 TCGA-38-4631 TCGA-38-4632 
       37.71        49.02        28.37        35.28        11.64        44.61 
TCGA-38-6178 TCGA-44-2655 TCGA-44-2656 TCGA-44-2657 TCGA-44-2659 TCGA-44-2661 
        5.19        18.87        19.10        13.15        17.39         3.39 
TCGA-44-2662 TCGA-44-2665 TCGA-44-2666 TCGA-44-2668 TCGA-44-3396 TCGA-44-3398 
       15.78        13.15         3.19         8.09        10.22         8.32 
TCGA-44-3918 TCGA-44-3919 TCGA-44-4112 TCGA-44-5643 TCGA-44-5645 TCGA-44-6144 
        6.44         6.21         4.60         3.48         6.84         0.30 
TCGA-44-6145 TCGA-44-6146 TCGA-44-6147 TCGA-44-6148 TCGA-44-6774 TCGA-44-6775 
        3.35         9.93         7.76         3.12         5.42         2.70 
TCGA-44-6776 TCGA-44-6778 TCGA-44-6779 TCGA-49-4486 TCGA-49-4487 TCGA-49-4488 
       63.72        36.49        16.41        76.21        28.11        28.57 
TCGA-49-4490 TCGA-49-4494 TCGA-49-4501 TCGA-49-4505 TCGA-49-4506 TCGA-49-4507 
       12.66        35.54        46.72        14.07        32.84         8.81 
TCGA-49-4510 TCGA-49-4512 TCGA-49-4514 TCGA-49-6742 TCGA-49-6743 TCGA-49-6744 
       29.46        29.75        43.20        15.02        12.13        12.99 
TCGA-49-6745 TCGA-50-5044 TCGA-50-5045 TCGA-50-5051 TCGA-50-5055 TCGA-50-5066 
        4.93        20.48        71.47        14.96        25.81         9.76 
TCGA-50-5068 TCGA-50-5072 TCGA-50-5930 TCGA-50-5931 TCGA-50-5932 TCGA-50-5933 
       49.28         8.05         9.27         8.78        35.87        77.88 
TCGA-50-5935 TCGA-50-5936 TCGA-50-5939 TCGA-50-5941 TCGA-50-5942 TCGA-50-5944 
       21.47         8.45        15.12         9.37         4.44        12.26 
TCGA-50-5946 TCGA-50-6590 TCGA-50-6591 TCGA-50-6592 TCGA-50-6594 TCGA-50-6595 
       11.47        42.31         3.88        25.51        12.16         6.21 
TCGA-50-6597 TCGA-55-1592 TCGA-55-1594 TCGA-55-1595 TCGA-55-1596 TCGA-55-5899 
       33.37        23.05        38.73        48.62        45.17         2.86 
TCGA-55-6543 TCGA-55-6642 TCGA-55-6712 TCGA-64-1676 TCGA-64-1677 TCGA-64-1678 
        0.07        32.61         0.79        56.81        20.65        39.09 
TCGA-64-1680 TCGA-64-5774 TCGA-64-5775 TCGA-64-5778 TCGA-64-5779 TCGA-64-5781 
       37.02        83.84         0.10        30.44        16.67        39.52 
TCGA-64-5815 TCGA-67-3770 TCGA-67-3771 TCGA-67-3772 TCGA-67-3773 TCGA-67-3774 
        7.33         0.99         1.97         0.59         2.04         0.59 
TCGA-67-6215 TCGA-67-6216 TCGA-67-6217 TCGA-71-6725 TCGA-73-4658 TCGA-73-4659 
        0.89         0.69        13.87         2.01        52.57        23.38 
TCGA-73-4662 TCGA-73-4666 TCGA-73-4668 TCGA-73-4675 TCGA-73-4676 TCGA-73-4677 
       29.95        20.28        15.35         1.32         4.01         1.25 
TCGA-91-6828 TCGA-91-6829 TCGA-91-6831 TCGA-91-6835 TCGA-91-6836 
        1.22        41.33         1.28         1.15         0.36 

  ZNF492 MUTATED ZNF492 WILD-TYPE 
            0.46             0.07 
  ZNF492 MUTATED ZNF492 WILD-TYPE 
           48.82            85.32 
  ZNF492 MUTATED ZNF492 WILD-TYPE 
          28.735           13.150 
[1] "0.5 - 48.8 (28.7)" "0.1 - 85.3 (13.2)"
      TCGA-05-4249       TCGA-05-4250       TCGA-05-4382       TCGA-05-4384 
"ZNF492 WILD-TYPE" "ZNF492 WILD-TYPE" "ZNF492 WILD-TYPE" "ZNF492 WILD-TYPE" 
      TCGA-05-4390       TCGA-05-4396       TCGA-05-4397       TCGA-05-4398 
"ZNF492 WILD-TYPE" "ZNF492 WILD-TYPE" "ZNF492 WILD-TYPE" "ZNF492 WILD-TYPE" 
      TCGA-05-4402       TCGA-05-4405       TCGA-05-4415       TCGA-05-4417 
"ZNF492 WILD-TYPE" "ZNF492 WILD-TYPE" "ZNF492 WILD-TYPE" "ZNF492 WILD-TYPE" 
      TCGA-05-4418       TCGA-05-4420       TCGA-05-4424       TCGA-05-4426 
"ZNF492 WILD-TYPE" "ZNF492 WILD-TYPE" "ZNF492 WILD-TYPE" "ZNF492 WILD-TYPE" 
      TCGA-05-4427       TCGA-05-4430       TCGA-05-4432       TCGA-05-4433 
"ZNF492 WILD-TYPE"   "ZNF492 MUTATED" "ZNF492 WILD-TYPE" "ZNF492 WILD-TYPE" 
      TCGA-05-4434       TCGA-05-5420       TCGA-05-5423       TCGA-05-5425 
"ZNF492 WILD-TYPE" "ZNF492 WILD-TYPE" "ZNF492 WILD-TYPE" "ZNF492 WILD-TYPE" 
      TCGA-05-5429       TCGA-05-5715       TCGA-35-3615       TCGA-35-4122 
"ZNF492 WILD-TYPE" "ZNF492 WILD-TYPE" "ZNF492 WILD-TYPE" "ZNF492 WILD-TYPE" 
      TCGA-35-4123       TCGA-35-5375       TCGA-38-4625       TCGA-38-4626 
"ZNF492 WILD-TYPE" "ZNF492 WILD-TYPE"   "ZNF492 MUTATED" "ZNF492 WILD-TYPE" 
      TCGA-38-4627       TCGA-38-4628       TCGA-38-4629       TCGA-38-4630 
"ZNF492 WILD-TYPE" "ZNF492 WILD-TYPE" "ZNF492 WILD-TYPE" "ZNF492 WILD-TYPE" 
      TCGA-38-4631       TCGA-38-4632       TCGA-38-6178       TCGA-44-2655 
"ZNF492 WILD-TYPE" "ZNF492 WILD-TYPE" "ZNF492 WILD-TYPE" "ZNF492 WILD-TYPE" 
      TCGA-44-2656       TCGA-44-2657       TCGA-44-2659       TCGA-44-2661 
"ZNF492 WILD-TYPE" "ZNF492 WILD-TYPE" "ZNF492 WILD-TYPE" "ZNF492 WILD-TYPE" 
      TCGA-44-2662       TCGA-44-2665       TCGA-44-2666       TCGA-44-2668 
"ZNF492 WILD-TYPE" "ZNF492 WILD-TYPE" "ZNF492 WILD-TYPE" "ZNF492 WILD-TYPE" 
      TCGA-44-3396       TCGA-44-3398       TCGA-44-3918       TCGA-44-3919 
"ZNF492 WILD-TYPE" "ZNF492 WILD-TYPE" "ZNF492 WILD-TYPE" "ZNF492 WILD-TYPE" 
      TCGA-44-4112       TCGA-44-5643       TCGA-44-5645       TCGA-44-6144 
"ZNF492 WILD-TYPE" "ZNF492 WILD-TYPE" "ZNF492 WILD-TYPE" "ZNF492 WILD-TYPE" 
      TCGA-44-6145       TCGA-44-6146       TCGA-44-6147       TCGA-44-6148 
"ZNF492 WILD-TYPE" "ZNF492 WILD-TYPE" "ZNF492 WILD-TYPE" "ZNF492 WILD-TYPE" 
      TCGA-44-6774       TCGA-44-6775       TCGA-44-6776       TCGA-44-6777 
"ZNF492 WILD-TYPE" "ZNF492 WILD-TYPE" "ZNF492 WILD-TYPE"   "ZNF492 MUTATED" 
      TCGA-44-6778       TCGA-44-6779       TCGA-49-4486       TCGA-49-4487 
"ZNF492 WILD-TYPE" "ZNF492 WILD-TYPE" "ZNF492 WILD-TYPE" "ZNF492 WILD-TYPE" 
      TCGA-49-4488       TCGA-49-4490       TCGA-49-4494       TCGA-49-4501 
"ZNF492 WILD-TYPE" "ZNF492 WILD-TYPE" "ZNF492 WILD-TYPE" "ZNF492 WILD-TYPE" 
      TCGA-49-4505       TCGA-49-4506       TCGA-49-4507       TCGA-49-4510 
"ZNF492 WILD-TYPE" "ZNF492 WILD-TYPE" "ZNF492 WILD-TYPE" "ZNF492 WILD-TYPE" 
      TCGA-49-4512       TCGA-49-4514       TCGA-49-6742       TCGA-49-6743 
"ZNF492 WILD-TYPE" "ZNF492 WILD-TYPE" "ZNF492 WILD-TYPE" "ZNF492 WILD-TYPE" 
      TCGA-49-6744       TCGA-49-6745       TCGA-50-5044       TCGA-50-5045 
"ZNF492 WILD-TYPE" "ZNF492 WILD-TYPE" "ZNF492 WILD-TYPE" "ZNF492 WILD-TYPE" 
      TCGA-50-5049       TCGA-50-5051       TCGA-50-5055       TCGA-50-5066 
  "ZNF492 MUTATED" "ZNF492 WILD-TYPE" "ZNF492 WILD-TYPE" "ZNF492 WILD-TYPE" 
      TCGA-50-5068       TCGA-50-5072       TCGA-50-5930       TCGA-50-5931 
"ZNF492 WILD-TYPE" "ZNF492 WILD-TYPE" "ZNF492 WILD-TYPE" "ZNF492 WILD-TYPE" 
      TCGA-50-5932       TCGA-50-5933       TCGA-50-5935       TCGA-50-5936 
"ZNF492 WILD-TYPE" "ZNF492 WILD-TYPE" "ZNF492 WILD-TYPE" "ZNF492 WILD-TYPE" 
      TCGA-50-5939       TCGA-50-5941       TCGA-50-5942       TCGA-50-5944 
"ZNF492 WILD-TYPE" "ZNF492 WILD-TYPE" "ZNF492 WILD-TYPE" "ZNF492 WILD-TYPE" 
      TCGA-50-5946       TCGA-50-6590       TCGA-50-6591       TCGA-50-6592 
"ZNF492 WILD-TYPE" "ZNF492 WILD-TYPE" "ZNF492 WILD-TYPE" "ZNF492 WILD-TYPE" 
      TCGA-50-6593       TCGA-50-6594       TCGA-50-6595       TCGA-50-6597 
  "ZNF492 MUTATED" "ZNF492 WILD-TYPE" "ZNF492 WILD-TYPE" "ZNF492 WILD-TYPE" 
      TCGA-55-1592       TCGA-55-1594       TCGA-55-1595       TCGA-55-1596 
"ZNF492 WILD-TYPE" "ZNF492 WILD-TYPE" "ZNF492 WILD-TYPE" "ZNF492 WILD-TYPE" 
      TCGA-55-5899       TCGA-55-6543       TCGA-55-6642       TCGA-55-6712 
"ZNF492 WILD-TYPE" "ZNF492 WILD-TYPE" "ZNF492 WILD-TYPE" "ZNF492 WILD-TYPE" 
      TCGA-64-1676       TCGA-64-1677       TCGA-64-1678       TCGA-64-1680 
"ZNF492 WILD-TYPE" "ZNF492 WILD-TYPE" "ZNF492 WILD-TYPE" "ZNF492 WILD-TYPE" 
      TCGA-64-5774       TCGA-64-5775       TCGA-64-5778       TCGA-64-5779 
"ZNF492 WILD-TYPE" "ZNF492 WILD-TYPE" "ZNF492 WILD-TYPE" "ZNF492 WILD-TYPE" 
      TCGA-64-5781       TCGA-64-5815       TCGA-67-3770       TCGA-67-3771 
"ZNF492 WILD-TYPE" "ZNF492 WILD-TYPE" "ZNF492 WILD-TYPE" "ZNF492 WILD-TYPE" 
      TCGA-67-3772       TCGA-67-3773       TCGA-67-3774       TCGA-67-6215 
"ZNF492 WILD-TYPE" "ZNF492 WILD-TYPE" "ZNF492 WILD-TYPE" "ZNF492 WILD-TYPE" 
      TCGA-67-6216       TCGA-67-6217       TCGA-71-6725       TCGA-73-4658 
"ZNF492 WILD-TYPE" "ZNF492 WILD-TYPE" "ZNF492 WILD-TYPE" "ZNF492 WILD-TYPE" 
      TCGA-73-4659       TCGA-73-4662       TCGA-73-4666       TCGA-73-4668 
"ZNF492 WILD-TYPE" "ZNF492 WILD-TYPE" "ZNF492 WILD-TYPE" "ZNF492 WILD-TYPE" 
      TCGA-73-4670       TCGA-73-4675       TCGA-73-4676       TCGA-73-4677 
  "ZNF492 MUTATED" "ZNF492 WILD-TYPE" "ZNF492 WILD-TYPE" "ZNF492 WILD-TYPE" 
      TCGA-91-6828       TCGA-91-6829       TCGA-91-6831       TCGA-91-6835 
"ZNF492 WILD-TYPE" "ZNF492 WILD-TYPE" "ZNF492 WILD-TYPE" "ZNF492 WILD-TYPE" 
      TCGA-91-6836 
"ZNF492 WILD-TYPE" 
      TCGA-05-4249       TCGA-05-4250       TCGA-05-4382       TCGA-05-4384 
"ZNF492 WILD-TYPE" "ZNF492 WILD-TYPE" "ZNF492 WILD-TYPE" "ZNF492 WILD-TYPE" 
      TCGA-05-4390       TCGA-05-4396       TCGA-05-4397       TCGA-05-4398 
"ZNF492 WILD-TYPE" "ZNF492 WILD-TYPE" "ZNF492 WILD-TYPE" "ZNF492 WILD-TYPE" 
      TCGA-05-4402       TCGA-05-4405       TCGA-05-4415       TCGA-05-4417 
"ZNF492 WILD-TYPE" "ZNF492 WILD-TYPE" "ZNF492 WILD-TYPE" "ZNF492 WILD-TYPE" 
      TCGA-05-4418       TCGA-05-4420       TCGA-05-4424       TCGA-05-4426 
"ZNF492 WILD-TYPE" "ZNF492 WILD-TYPE" "ZNF492 WILD-TYPE" "ZNF492 WILD-TYPE" 
      TCGA-05-4427       TCGA-05-4430       TCGA-05-4432       TCGA-05-4433 
"ZNF492 WILD-TYPE"   "ZNF492 MUTATED" "ZNF492 WILD-TYPE" "ZNF492 WILD-TYPE" 
      TCGA-05-4434       TCGA-05-5420       TCGA-05-5423       TCGA-05-5425 
"ZNF492 WILD-TYPE" "ZNF492 WILD-TYPE" "ZNF492 WILD-TYPE" "ZNF492 WILD-TYPE" 
      TCGA-05-5429       TCGA-05-5715       TCGA-35-3615       TCGA-35-4122 
"ZNF492 WILD-TYPE" "ZNF492 WILD-TYPE" "ZNF492 WILD-TYPE" "ZNF492 WILD-TYPE" 
      TCGA-35-4123       TCGA-35-5375       TCGA-38-4625       TCGA-38-4626 
"ZNF492 WILD-TYPE" "ZNF492 WILD-TYPE"   "ZNF492 MUTATED" "ZNF492 WILD-TYPE" 
      TCGA-38-4627       TCGA-38-4628       TCGA-38-4629       TCGA-38-4630 
"ZNF492 WILD-TYPE" "ZNF492 WILD-TYPE" "ZNF492 WILD-TYPE" "ZNF492 WILD-TYPE" 
      TCGA-38-4631       TCGA-38-4632       TCGA-38-6178       TCGA-44-2655 
"ZNF492 WILD-TYPE" "ZNF492 WILD-TYPE" "ZNF492 WILD-TYPE" "ZNF492 WILD-TYPE" 
      TCGA-44-2656       TCGA-44-2657       TCGA-44-2659       TCGA-44-2661 
"ZNF492 WILD-TYPE" "ZNF492 WILD-TYPE" "ZNF492 WILD-TYPE" "ZNF492 WILD-TYPE" 
      TCGA-44-2662       TCGA-44-2665       TCGA-44-2666       TCGA-44-2668 
"ZNF492 WILD-TYPE" "ZNF492 WILD-TYPE" "ZNF492 WILD-TYPE" "ZNF492 WILD-TYPE" 
      TCGA-44-3396       TCGA-44-3398       TCGA-44-3918       TCGA-44-3919 
"ZNF492 WILD-TYPE" "ZNF492 WILD-TYPE" "ZNF492 WILD-TYPE" "ZNF492 WILD-TYPE" 
      TCGA-44-4112       TCGA-44-5643       TCGA-44-5645       TCGA-44-6144 
"ZNF492 WILD-TYPE" "ZNF492 WILD-TYPE" "ZNF492 WILD-TYPE" "ZNF492 WILD-TYPE" 
      TCGA-44-6145       TCGA-44-6146       TCGA-44-6147       TCGA-44-6148 
"ZNF492 WILD-TYPE" "ZNF492 WILD-TYPE" "ZNF492 WILD-TYPE" "ZNF492 WILD-TYPE" 
      TCGA-44-6774       TCGA-44-6775       TCGA-44-6776       TCGA-44-6777 
"ZNF492 WILD-TYPE" "ZNF492 WILD-TYPE" "ZNF492 WILD-TYPE"   "ZNF492 MUTATED" 
      TCGA-44-6778       TCGA-44-6779       TCGA-49-4486       TCGA-49-4487 
"ZNF492 WILD-TYPE" "ZNF492 WILD-TYPE" "ZNF492 WILD-TYPE" "ZNF492 WILD-TYPE" 
      TCGA-49-4488       TCGA-49-4490       TCGA-49-4494       TCGA-49-4501 
"ZNF492 WILD-TYPE" "ZNF492 WILD-TYPE" "ZNF492 WILD-TYPE" "ZNF492 WILD-TYPE" 
      TCGA-49-4505       TCGA-49-4506       TCGA-49-4507       TCGA-49-4510 
"ZNF492 WILD-TYPE" "ZNF492 WILD-TYPE" "ZNF492 WILD-TYPE" "ZNF492 WILD-TYPE" 
      TCGA-49-4512       TCGA-49-4514       TCGA-49-6742       TCGA-49-6743 
"ZNF492 WILD-TYPE" "ZNF492 WILD-TYPE" "ZNF492 WILD-TYPE" "ZNF492 WILD-TYPE" 
      TCGA-49-6744       TCGA-49-6745       TCGA-50-5044       TCGA-50-5045 
"ZNF492 WILD-TYPE" "ZNF492 WILD-TYPE" "ZNF492 WILD-TYPE" "ZNF492 WILD-TYPE" 
      TCGA-50-5049       TCGA-50-5051       TCGA-50-5055       TCGA-50-5066 
  "ZNF492 MUTATED" "ZNF492 WILD-TYPE" "ZNF492 WILD-TYPE" "ZNF492 WILD-TYPE" 
      TCGA-50-5068       TCGA-50-5072       TCGA-50-5930       TCGA-50-5931 
"ZNF492 WILD-TYPE" "ZNF492 WILD-TYPE" "ZNF492 WILD-TYPE" "ZNF492 WILD-TYPE" 
      TCGA-50-5932       TCGA-50-5933       TCGA-50-5935       TCGA-50-5936 
"ZNF492 WILD-TYPE" "ZNF492 WILD-TYPE" "ZNF492 WILD-TYPE" "ZNF492 WILD-TYPE" 
      TCGA-50-5939       TCGA-50-5941       TCGA-50-5942       TCGA-50-5944 
"ZNF492 WILD-TYPE" "ZNF492 WILD-TYPE" "ZNF492 WILD-TYPE" "ZNF492 WILD-TYPE" 
      TCGA-50-5946       TCGA-50-6590       TCGA-50-6591       TCGA-50-6592 
"ZNF492 WILD-TYPE" "ZNF492 WILD-TYPE" "ZNF492 WILD-TYPE" "ZNF492 WILD-TYPE" 
      TCGA-50-6593       TCGA-50-6594       TCGA-50-6595       TCGA-50-6597 
  "ZNF492 MUTATED" "ZNF492 WILD-TYPE" "ZNF492 WILD-TYPE" "ZNF492 WILD-TYPE" 
      TCGA-55-1592       TCGA-55-1594       TCGA-55-1595       TCGA-55-1596 
"ZNF492 WILD-TYPE" "ZNF492 WILD-TYPE" "ZNF492 WILD-TYPE" "ZNF492 WILD-TYPE" 
      TCGA-55-5899       TCGA-55-6543       TCGA-55-6642       TCGA-55-6712 
"ZNF492 WILD-TYPE" "ZNF492 WILD-TYPE" "ZNF492 WILD-TYPE" "ZNF492 WILD-TYPE" 
      TCGA-64-1676       TCGA-64-1677       TCGA-64-1678       TCGA-64-1680 
"ZNF492 WILD-TYPE" "ZNF492 WILD-TYPE" "ZNF492 WILD-TYPE" "ZNF492 WILD-TYPE" 
      TCGA-64-5774       TCGA-64-5775       TCGA-64-5778       TCGA-64-5779 
"ZNF492 WILD-TYPE" "ZNF492 WILD-TYPE" "ZNF492 WILD-TYPE" "ZNF492 WILD-TYPE" 
      TCGA-64-5781       TCGA-64-5815       TCGA-67-3770       TCGA-67-3771 
"ZNF492 WILD-TYPE" "ZNF492 WILD-TYPE" "ZNF492 WILD-TYPE" "ZNF492 WILD-TYPE" 
      TCGA-67-3772       TCGA-67-3773       TCGA-67-3774       TCGA-67-6215 
"ZNF492 WILD-TYPE" "ZNF492 WILD-TYPE" "ZNF492 WILD-TYPE" "ZNF492 WILD-TYPE" 
      TCGA-67-6216       TCGA-67-6217       TCGA-71-6725       TCGA-73-4658 
"ZNF492 WILD-TYPE" "ZNF492 WILD-TYPE" "ZNF492 WILD-TYPE" "ZNF492 WILD-TYPE" 
      TCGA-73-4659       TCGA-73-4662       TCGA-73-4666       TCGA-73-4668 
"ZNF492 WILD-TYPE" "ZNF492 WILD-TYPE" "ZNF492 WILD-TYPE" "ZNF492 WILD-TYPE" 
      TCGA-73-4670       TCGA-73-4675       TCGA-73-4676       TCGA-73-4677 
  "ZNF492 MUTATED" "ZNF492 WILD-TYPE" "ZNF492 WILD-TYPE" "ZNF492 WILD-TYPE" 
      TCGA-91-6828       TCGA-91-6829       TCGA-91-6831       TCGA-91-6835 
"ZNF492 WILD-TYPE" "ZNF492 WILD-TYPE" "ZNF492 WILD-TYPE" "ZNF492 WILD-TYPE" 
      TCGA-91-6836 
"ZNF492 WILD-TYPE" 
      TCGA-05-4249       TCGA-05-4250       TCGA-05-4382       TCGA-05-4384 
"ZNF492 WILD-TYPE" "ZNF492 WILD-TYPE" "ZNF492 WILD-TYPE" "ZNF492 WILD-TYPE" 
      TCGA-05-4390       TCGA-05-4396       TCGA-05-4397       TCGA-05-4398 
"ZNF492 WILD-TYPE" "ZNF492 WILD-TYPE" "ZNF492 WILD-TYPE" "ZNF492 WILD-TYPE" 
      TCGA-05-4402       TCGA-05-4405       TCGA-05-4415       TCGA-05-4417 
"ZNF492 WILD-TYPE" "ZNF492 WILD-TYPE" "ZNF492 WILD-TYPE" "ZNF492 WILD-TYPE" 
      TCGA-05-4418       TCGA-05-4420       TCGA-05-4424       TCGA-05-4426 
"ZNF492 WILD-TYPE" "ZNF492 WILD-TYPE" "ZNF492 WILD-TYPE" "ZNF492 WILD-TYPE" 
      TCGA-05-4427       TCGA-05-4430       TCGA-05-4432       TCGA-05-4433 
"ZNF492 WILD-TYPE"   "ZNF492 MUTATED" "ZNF492 WILD-TYPE" "ZNF492 WILD-TYPE" 
      TCGA-05-4434       TCGA-05-5420       TCGA-05-5423       TCGA-05-5425 
"ZNF492 WILD-TYPE" "ZNF492 WILD-TYPE" "ZNF492 WILD-TYPE" "ZNF492 WILD-TYPE" 
      TCGA-05-5429       TCGA-05-5715       TCGA-35-3615       TCGA-35-4122 
"ZNF492 WILD-TYPE" "ZNF492 WILD-TYPE" "ZNF492 WILD-TYPE" "ZNF492 WILD-TYPE" 
      TCGA-35-4123       TCGA-35-5375       TCGA-38-4625       TCGA-38-4626 
"ZNF492 WILD-TYPE" "ZNF492 WILD-TYPE"   "ZNF492 MUTATED" "ZNF492 WILD-TYPE" 
      TCGA-38-4627       TCGA-38-4628       TCGA-38-4629       TCGA-38-4630 
"ZNF492 WILD-TYPE" "ZNF492 WILD-TYPE" "ZNF492 WILD-TYPE" "ZNF492 WILD-TYPE" 
      TCGA-38-4631       TCGA-38-4632       TCGA-38-6178       TCGA-44-2655 
"ZNF492 WILD-TYPE" "ZNF492 WILD-TYPE" "ZNF492 WILD-TYPE" "ZNF492 WILD-TYPE" 
      TCGA-44-2656       TCGA-44-2657       TCGA-44-2659       TCGA-44-2661 
"ZNF492 WILD-TYPE" "ZNF492 WILD-TYPE" "ZNF492 WILD-TYPE" "ZNF492 WILD-TYPE" 
      TCGA-44-2662       TCGA-44-2665       TCGA-44-2666       TCGA-44-2668 
"ZNF492 WILD-TYPE" "ZNF492 WILD-TYPE" "ZNF492 WILD-TYPE" "ZNF492 WILD-TYPE" 
      TCGA-44-3396       TCGA-44-3398       TCGA-44-3918       TCGA-44-3919 
"ZNF492 WILD-TYPE" "ZNF492 WILD-TYPE" "ZNF492 WILD-TYPE" "ZNF492 WILD-TYPE" 
      TCGA-44-4112       TCGA-44-5643       TCGA-44-5645       TCGA-44-6144 
"ZNF492 WILD-TYPE" "ZNF492 WILD-TYPE" "ZNF492 WILD-TYPE" "ZNF492 WILD-TYPE" 
      TCGA-44-6145       TCGA-44-6146       TCGA-44-6147       TCGA-44-6148 
"ZNF492 WILD-TYPE" "ZNF492 WILD-TYPE" "ZNF492 WILD-TYPE" "ZNF492 WILD-TYPE" 
      TCGA-44-6774       TCGA-44-6775       TCGA-44-6776       TCGA-44-6777 
"ZNF492 WILD-TYPE" "ZNF492 WILD-TYPE" "ZNF492 WILD-TYPE"   "ZNF492 MUTATED" 
      TCGA-44-6778       TCGA-44-6779       TCGA-49-4486       TCGA-49-4487 
"ZNF492 WILD-TYPE" "ZNF492 WILD-TYPE" "ZNF492 WILD-TYPE" "ZNF492 WILD-TYPE" 
      TCGA-49-4488       TCGA-49-4490       TCGA-49-4494       TCGA-49-4501 
"ZNF492 WILD-TYPE" "ZNF492 WILD-TYPE" "ZNF492 WILD-TYPE" "ZNF492 WILD-TYPE" 
      TCGA-49-4505       TCGA-49-4506       TCGA-49-4507       TCGA-49-4510 
"ZNF492 WILD-TYPE" "ZNF492 WILD-TYPE" "ZNF492 WILD-TYPE" "ZNF492 WILD-TYPE" 
      TCGA-49-4512       TCGA-49-4514       TCGA-49-6742       TCGA-49-6743 
"ZNF492 WILD-TYPE" "ZNF492 WILD-TYPE" "ZNF492 WILD-TYPE" "ZNF492 WILD-TYPE" 
      TCGA-49-6744       TCGA-49-6745       TCGA-50-5044       TCGA-50-5045 
"ZNF492 WILD-TYPE" "ZNF492 WILD-TYPE" "ZNF492 WILD-TYPE" "ZNF492 WILD-TYPE" 
      TCGA-50-5049       TCGA-50-5051       TCGA-50-5055       TCGA-50-5066 
  "ZNF492 MUTATED" "ZNF492 WILD-TYPE" "ZNF492 WILD-TYPE" "ZNF492 WILD-TYPE" 
      TCGA-50-5068       TCGA-50-5072       TCGA-50-5930       TCGA-50-5931 
"ZNF492 WILD-TYPE" "ZNF492 WILD-TYPE" "ZNF492 WILD-TYPE" "ZNF492 WILD-TYPE" 
      TCGA-50-5932       TCGA-50-5933       TCGA-50-5935       TCGA-50-5936 
"ZNF492 WILD-TYPE" "ZNF492 WILD-TYPE" "ZNF492 WILD-TYPE" "ZNF492 WILD-TYPE" 
      TCGA-50-5939       TCGA-50-5941       TCGA-50-5942       TCGA-50-5944 
"ZNF492 WILD-TYPE" "ZNF492 WILD-TYPE" "ZNF492 WILD-TYPE" "ZNF492 WILD-TYPE" 
      TCGA-50-5946       TCGA-50-6590       TCGA-50-6591       TCGA-50-6592 
"ZNF492 WILD-TYPE" "ZNF492 WILD-TYPE" "ZNF492 WILD-TYPE" "ZNF492 WILD-TYPE" 
      TCGA-50-6593       TCGA-50-6594       TCGA-50-6595       TCGA-50-6597 
  "ZNF492 MUTATED" "ZNF492 WILD-TYPE" "ZNF492 WILD-TYPE" "ZNF492 WILD-TYPE" 
      TCGA-55-1592       TCGA-55-1594       TCGA-55-1595       TCGA-55-1596 
"ZNF492 WILD-TYPE" "ZNF492 WILD-TYPE" "ZNF492 WILD-TYPE" "ZNF492 WILD-TYPE" 
      TCGA-55-5899       TCGA-55-6543       TCGA-55-6642       TCGA-55-6712 
"ZNF492 WILD-TYPE" "ZNF492 WILD-TYPE" "ZNF492 WILD-TYPE" "ZNF492 WILD-TYPE" 
      TCGA-64-1676       TCGA-64-1677       TCGA-64-1678       TCGA-64-1680 
"ZNF492 WILD-TYPE" "ZNF492 WILD-TYPE" "ZNF492 WILD-TYPE" "ZNF492 WILD-TYPE" 
      TCGA-64-5774       TCGA-64-5775       TCGA-64-5778       TCGA-64-5779 
"ZNF492 WILD-TYPE" "ZNF492 WILD-TYPE" "ZNF492 WILD-TYPE" "ZNF492 WILD-TYPE" 
      TCGA-64-5781       TCGA-64-5815       TCGA-67-3770       TCGA-67-3771 
"ZNF492 WILD-TYPE" "ZNF492 WILD-TYPE" "ZNF492 WILD-TYPE" "ZNF492 WILD-TYPE" 
      TCGA-67-3772       TCGA-67-3773       TCGA-67-3774       TCGA-67-6215 
"ZNF492 WILD-TYPE" "ZNF492 WILD-TYPE" "ZNF492 WILD-TYPE" "ZNF492 WILD-TYPE" 
      TCGA-67-6216       TCGA-67-6217       TCGA-71-6725       TCGA-73-4658 
"ZNF492 WILD-TYPE" "ZNF492 WILD-TYPE" "ZNF492 WILD-TYPE" "ZNF492 WILD-TYPE" 
      TCGA-73-4659       TCGA-73-4662       TCGA-73-4666       TCGA-73-4668 
"ZNF492 WILD-TYPE" "ZNF492 WILD-TYPE" "ZNF492 WILD-TYPE" "ZNF492 WILD-TYPE" 
      TCGA-73-4670       TCGA-73-4675       TCGA-73-4676       TCGA-73-4677 
  "ZNF492 MUTATED" "ZNF492 WILD-TYPE" "ZNF492 WILD-TYPE" "ZNF492 WILD-TYPE" 
      TCGA-91-6828       TCGA-91-6829       TCGA-91-6831       TCGA-91-6835 
"ZNF492 WILD-TYPE" "ZNF492 WILD-TYPE" "ZNF492 WILD-TYPE" "ZNF492 WILD-TYPE" 
      TCGA-91-6836 
"ZNF492 WILD-TYPE" 
[1] "hr=" "1.5"
D45V2, continuous
D45V3, binary
[1] "tbl2"
                  cls
clus               [,1] [,2]
  ZNF492 MUTATED      5    3
  ZNF492 WILD-TYPE   88   76
        clus
vv       ZNF492 MUTATED ZNF492 WILD-TYPE
  FEMALE              5               88
  MALE                3               76
D45V4, continuous
D45V5, multiclass
D45V6, multiclass
    clus
vv   ZNF492 MUTATED ZNF492 WILD-TYPE
  T1              1               40
  T2              7              101
  T3              0               14
  T4              0                8
D45V7, multiclass
       clus
vv      ZNF492 MUTATED ZNF492 WILD-TYPE
  N0                 6               89
  N1                 0               37
  N2+N3              1               34
D45V8, multiclass
    clus
vv   ZNF492 MUTATED ZNF492 WILD-TYPE
  M0              6              131
  M1              1                8
  MX              1               21
D45V9, multiclass
     clus
vv    ZNF492 MUTATED ZNF492 WILD-TYPE
  I                6               82
  II               0               33
  III              1               38
  IV               1                8
D45V10, binary
[1] "tbl2"
                  cls
clus               [,1] [,2]
  ZNF492 MUTATED      2    6
  ZNF492 WILD-TYPE   14  150
     clus
vv    ZNF492 MUTATED ZNF492 WILD-TYPE
  NO               2               14
  YES              6              150
D45V11, continuous
D45V12, continuous
D45V13, multiclass
                                             clus
vv                                            ZNF492 MUTATED ZNF492 WILD-TYPE
  CURRENT REFORMED SMOKER FOR < OR = 15 YEARS              5               57
  CURRENT REFORMED SMOKER FOR > 15 YEARS                   1               45
  CURRENT SMOKER                                           1               27
  LIFELONG NON-SMOKER                                      0               24
D45V14, continuous

Clustering(46) Variable = CPXCR1 MUTATION ANALYSIS
D46V1, survival
                  sevent
clus2               0  1
  CPXCR1 MUTATED    7  0
  CPXCR1 WILD-TYPE 92 50
  CPXCR1 MUTATED CPXCR1 WILD-TYPE 
               7              142 
  CPXCR1 MUTATED CPXCR1 WILD-TYPE 
               0               50 
$`CPXCR1 MUTATED`
TCGA-05-4427 TCGA-44-4112 TCGA-44-6774 TCGA-44-6778 TCGA-64-1678 TCGA-67-3771 
       26.01         4.60         5.42        36.49        39.09         1.97 
TCGA-73-4662 
       29.95 

$`CPXCR1 WILD-TYPE`
TCGA-05-4249 TCGA-05-4250 TCGA-05-4382 TCGA-05-4384 TCGA-05-4390 TCGA-05-4396 
       38.07         3.98        19.92        14.01        37.02         9.96 
TCGA-05-4397 TCGA-05-4398 TCGA-05-4402 TCGA-05-4405 TCGA-05-4415 TCGA-05-4417 
       24.03        47.05         8.02        20.05         2.96        14.93 
TCGA-05-4418 TCGA-05-4420 TCGA-05-4424 TCGA-05-4426 TCGA-05-4430 TCGA-05-4432 
        8.98        29.95        30.02        26.01        25.02        25.02 
TCGA-05-4433 TCGA-05-4434 TCGA-05-5420 TCGA-05-5423 TCGA-05-5425 TCGA-05-5429 
       24.00        15.02         1.02         4.96         2.96         0.99 
TCGA-05-5715 TCGA-35-3615 TCGA-35-4122 TCGA-35-4123 TCGA-35-5375 TCGA-38-4625 
        2.04         0.46         7.36         5.95         8.68        47.61 
TCGA-38-4626 TCGA-38-4627 TCGA-38-4628 TCGA-38-4629 TCGA-38-4630 TCGA-38-4631 
       85.32        37.71        49.02        28.37        35.28        11.64 
TCGA-38-4632 TCGA-38-6178 TCGA-44-2655 TCGA-44-2656 TCGA-44-2657 TCGA-44-2659 
       44.61         5.19        18.87        19.10        13.15        17.39 
TCGA-44-2661 TCGA-44-2662 TCGA-44-2665 TCGA-44-2666 TCGA-44-2668 TCGA-44-3396 
        3.39        15.78        13.15         3.19         8.09        10.22 
TCGA-44-3398 TCGA-44-3918 TCGA-44-3919 TCGA-44-5643 TCGA-44-5645 TCGA-44-6144 
        8.32         6.44         6.21         3.48         6.84         0.30 
TCGA-44-6145 TCGA-44-6146 TCGA-44-6147 TCGA-44-6148 TCGA-44-6775 TCGA-44-6776 
        3.35         9.93         7.76         3.12         2.70        63.72 
TCGA-44-6777 TCGA-44-6779 TCGA-49-4486 TCGA-49-4487 TCGA-49-4488 TCGA-49-4490 
       32.45        16.41        76.21        28.11        28.57        12.66 
TCGA-49-4494 TCGA-49-4501 TCGA-49-4505 TCGA-49-4506 TCGA-49-4507 TCGA-49-4510 
       35.54        46.72        14.07        32.84         8.81        29.46 
TCGA-49-4512 TCGA-49-4514 TCGA-49-6742 TCGA-49-6743 TCGA-49-6744 TCGA-49-6745 
       29.75        43.20        15.02        12.13        12.99         4.93 
TCGA-50-5044 TCGA-50-5045 TCGA-50-5049 TCGA-50-5051 TCGA-50-5055 TCGA-50-5066 
       20.48        71.47        48.82        14.96        25.81         9.76 
TCGA-50-5068 TCGA-50-5072 TCGA-50-5930 TCGA-50-5931 TCGA-50-5932 TCGA-50-5933 
       49.28         8.05         9.27         8.78        35.87        77.88 
TCGA-50-5935 TCGA-50-5936 TCGA-50-5939 TCGA-50-5941 TCGA-50-5942 TCGA-50-5944 
       21.47         8.45        15.12         9.37         4.44        12.26 
TCGA-50-5946 TCGA-50-6590 TCGA-50-6591 TCGA-50-6592 TCGA-50-6593 TCGA-50-6594 
       11.47        42.31         3.88        25.51        11.05        12.16 
TCGA-50-6595 TCGA-50-6597 TCGA-55-1592 TCGA-55-1594 TCGA-55-1595 TCGA-55-1596 
        6.21        33.37        23.05        38.73        48.62        45.17 
TCGA-55-5899 TCGA-55-6543 TCGA-55-6642 TCGA-55-6712 TCGA-64-1676 TCGA-64-1677 
        2.86         0.07        32.61         0.79        56.81        20.65 
TCGA-64-1680 TCGA-64-5774 TCGA-64-5775 TCGA-64-5778 TCGA-64-5779 TCGA-64-5781 
       37.02        83.84         0.10        30.44        16.67        39.52 
TCGA-64-5815 TCGA-67-3770 TCGA-67-3772 TCGA-67-3773 TCGA-67-3774 TCGA-67-6215 
        7.33         0.99         0.59         2.04         0.59         0.89 
TCGA-67-6216 TCGA-67-6217 TCGA-71-6725 TCGA-73-4658 TCGA-73-4659 TCGA-73-4666 
        0.69        13.87         2.01        52.57        23.38        20.28 
TCGA-73-4668 TCGA-73-4670 TCGA-73-4675 TCGA-73-4676 TCGA-73-4677 TCGA-91-6828 
       15.35         0.46         1.32         4.01         1.25         1.22 
TCGA-91-6829 TCGA-91-6831 TCGA-91-6835 TCGA-91-6836 
       41.33         1.28         1.15         0.36 

  CPXCR1 MUTATED CPXCR1 WILD-TYPE 
            1.97             0.07 
  CPXCR1 MUTATED CPXCR1 WILD-TYPE 
           39.09            85.32 
  CPXCR1 MUTATED CPXCR1 WILD-TYPE 
           26.01            13.51 
[1] "2.0 - 39.1 (26.0)" "0.1 - 85.3 (13.5)"
      TCGA-05-4249       TCGA-05-4250       TCGA-05-4382       TCGA-05-4384 
"CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" 
      TCGA-05-4390       TCGA-05-4396       TCGA-05-4397       TCGA-05-4398 
"CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" 
      TCGA-05-4402       TCGA-05-4405       TCGA-05-4415       TCGA-05-4417 
"CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" 
      TCGA-05-4418       TCGA-05-4420       TCGA-05-4424       TCGA-05-4426 
"CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" 
      TCGA-05-4427       TCGA-05-4430       TCGA-05-4432       TCGA-05-4433 
  "CPXCR1 MUTATED" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" 
      TCGA-05-4434       TCGA-05-5420       TCGA-05-5423       TCGA-05-5425 
"CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" 
      TCGA-05-5429       TCGA-05-5715       TCGA-35-3615       TCGA-35-4122 
"CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" 
      TCGA-35-4123       TCGA-35-5375       TCGA-38-4625       TCGA-38-4626 
"CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" 
      TCGA-38-4627       TCGA-38-4628       TCGA-38-4629       TCGA-38-4630 
"CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" 
      TCGA-38-4631       TCGA-38-4632       TCGA-38-6178       TCGA-44-2655 
"CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" 
      TCGA-44-2656       TCGA-44-2657       TCGA-44-2659       TCGA-44-2661 
"CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" 
      TCGA-44-2662       TCGA-44-2665       TCGA-44-2666       TCGA-44-2668 
"CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" 
      TCGA-44-3396       TCGA-44-3398       TCGA-44-3918       TCGA-44-3919 
"CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" 
      TCGA-44-4112       TCGA-44-5643       TCGA-44-5645       TCGA-44-6144 
  "CPXCR1 MUTATED" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" 
      TCGA-44-6145       TCGA-44-6146       TCGA-44-6147       TCGA-44-6148 
"CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" 
      TCGA-44-6774       TCGA-44-6775       TCGA-44-6776       TCGA-44-6777 
  "CPXCR1 MUTATED" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" 
      TCGA-44-6778       TCGA-44-6779       TCGA-49-4486       TCGA-49-4487 
  "CPXCR1 MUTATED" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" 
      TCGA-49-4488       TCGA-49-4490       TCGA-49-4494       TCGA-49-4501 
"CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" 
      TCGA-49-4505       TCGA-49-4506       TCGA-49-4507       TCGA-49-4510 
"CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" 
      TCGA-49-4512       TCGA-49-4514       TCGA-49-6742       TCGA-49-6743 
"CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" 
      TCGA-49-6744       TCGA-49-6745       TCGA-50-5044       TCGA-50-5045 
"CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" 
      TCGA-50-5049       TCGA-50-5051       TCGA-50-5055       TCGA-50-5066 
"CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" 
      TCGA-50-5068       TCGA-50-5072       TCGA-50-5930       TCGA-50-5931 
"CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" 
      TCGA-50-5932       TCGA-50-5933       TCGA-50-5935       TCGA-50-5936 
"CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" 
      TCGA-50-5939       TCGA-50-5941       TCGA-50-5942       TCGA-50-5944 
"CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" 
      TCGA-50-5946       TCGA-50-6590       TCGA-50-6591       TCGA-50-6592 
"CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" 
      TCGA-50-6593       TCGA-50-6594       TCGA-50-6595       TCGA-50-6597 
"CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" 
      TCGA-55-1592       TCGA-55-1594       TCGA-55-1595       TCGA-55-1596 
"CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" 
      TCGA-55-5899       TCGA-55-6543       TCGA-55-6642       TCGA-55-6712 
"CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" 
      TCGA-64-1676       TCGA-64-1677       TCGA-64-1678       TCGA-64-1680 
"CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE"   "CPXCR1 MUTATED" "CPXCR1 WILD-TYPE" 
      TCGA-64-5774       TCGA-64-5775       TCGA-64-5778       TCGA-64-5779 
"CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" 
      TCGA-64-5781       TCGA-64-5815       TCGA-67-3770       TCGA-67-3771 
"CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE"   "CPXCR1 MUTATED" 
      TCGA-67-3772       TCGA-67-3773       TCGA-67-3774       TCGA-67-6215 
"CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" 
      TCGA-67-6216       TCGA-67-6217       TCGA-71-6725       TCGA-73-4658 
"CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" 
      TCGA-73-4659       TCGA-73-4662       TCGA-73-4666       TCGA-73-4668 
"CPXCR1 WILD-TYPE"   "CPXCR1 MUTATED" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" 
      TCGA-73-4670       TCGA-73-4675       TCGA-73-4676       TCGA-73-4677 
"CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" 
      TCGA-91-6828       TCGA-91-6829       TCGA-91-6831       TCGA-91-6835 
"CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" 
      TCGA-91-6836 
"CPXCR1 WILD-TYPE" 
      TCGA-05-4249       TCGA-05-4250       TCGA-05-4382       TCGA-05-4384 
"CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" 
      TCGA-05-4390       TCGA-05-4396       TCGA-05-4397       TCGA-05-4398 
"CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" 
      TCGA-05-4402       TCGA-05-4405       TCGA-05-4415       TCGA-05-4417 
"CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" 
      TCGA-05-4418       TCGA-05-4420       TCGA-05-4424       TCGA-05-4426 
"CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" 
      TCGA-05-4427       TCGA-05-4430       TCGA-05-4432       TCGA-05-4433 
  "CPXCR1 MUTATED" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" 
      TCGA-05-4434       TCGA-05-5420       TCGA-05-5423       TCGA-05-5425 
"CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" 
      TCGA-05-5429       TCGA-05-5715       TCGA-35-3615       TCGA-35-4122 
"CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" 
      TCGA-35-4123       TCGA-35-5375       TCGA-38-4625       TCGA-38-4626 
"CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" 
      TCGA-38-4627       TCGA-38-4628       TCGA-38-4629       TCGA-38-4630 
"CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" 
      TCGA-38-4631       TCGA-38-4632       TCGA-38-6178       TCGA-44-2655 
"CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" 
      TCGA-44-2656       TCGA-44-2657       TCGA-44-2659       TCGA-44-2661 
"CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" 
      TCGA-44-2662       TCGA-44-2665       TCGA-44-2666       TCGA-44-2668 
"CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" 
      TCGA-44-3396       TCGA-44-3398       TCGA-44-3918       TCGA-44-3919 
"CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" 
      TCGA-44-4112       TCGA-44-5643       TCGA-44-5645       TCGA-44-6144 
  "CPXCR1 MUTATED" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" 
      TCGA-44-6145       TCGA-44-6146       TCGA-44-6147       TCGA-44-6148 
"CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" 
      TCGA-44-6774       TCGA-44-6775       TCGA-44-6776       TCGA-44-6777 
  "CPXCR1 MUTATED" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" 
      TCGA-44-6778       TCGA-44-6779       TCGA-49-4486       TCGA-49-4487 
  "CPXCR1 MUTATED" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" 
      TCGA-49-4488       TCGA-49-4490       TCGA-49-4494       TCGA-49-4501 
"CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" 
      TCGA-49-4505       TCGA-49-4506       TCGA-49-4507       TCGA-49-4510 
"CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" 
      TCGA-49-4512       TCGA-49-4514       TCGA-49-6742       TCGA-49-6743 
"CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" 
      TCGA-49-6744       TCGA-49-6745       TCGA-50-5044       TCGA-50-5045 
"CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" 
      TCGA-50-5049       TCGA-50-5051       TCGA-50-5055       TCGA-50-5066 
"CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" 
      TCGA-50-5068       TCGA-50-5072       TCGA-50-5930       TCGA-50-5931 
"CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" 
      TCGA-50-5932       TCGA-50-5933       TCGA-50-5935       TCGA-50-5936 
"CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" 
      TCGA-50-5939       TCGA-50-5941       TCGA-50-5942       TCGA-50-5944 
"CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" 
      TCGA-50-5946       TCGA-50-6590       TCGA-50-6591       TCGA-50-6592 
"CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" 
      TCGA-50-6593       TCGA-50-6594       TCGA-50-6595       TCGA-50-6597 
"CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" 
      TCGA-55-1592       TCGA-55-1594       TCGA-55-1595       TCGA-55-1596 
"CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" 
      TCGA-55-5899       TCGA-55-6543       TCGA-55-6642       TCGA-55-6712 
"CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" 
      TCGA-64-1676       TCGA-64-1677       TCGA-64-1678       TCGA-64-1680 
"CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE"   "CPXCR1 MUTATED" "CPXCR1 WILD-TYPE" 
      TCGA-64-5774       TCGA-64-5775       TCGA-64-5778       TCGA-64-5779 
"CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" 
      TCGA-64-5781       TCGA-64-5815       TCGA-67-3770       TCGA-67-3771 
"CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE"   "CPXCR1 MUTATED" 
      TCGA-67-3772       TCGA-67-3773       TCGA-67-3774       TCGA-67-6215 
"CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" 
      TCGA-67-6216       TCGA-67-6217       TCGA-71-6725       TCGA-73-4658 
"CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" 
      TCGA-73-4659       TCGA-73-4662       TCGA-73-4666       TCGA-73-4668 
"CPXCR1 WILD-TYPE"   "CPXCR1 MUTATED" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" 
      TCGA-73-4670       TCGA-73-4675       TCGA-73-4676       TCGA-73-4677 
"CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" 
      TCGA-91-6828       TCGA-91-6829       TCGA-91-6831       TCGA-91-6835 
"CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" 
      TCGA-91-6836 
"CPXCR1 WILD-TYPE" 
      TCGA-05-4249       TCGA-05-4250       TCGA-05-4382       TCGA-05-4384 
"CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" 
      TCGA-05-4390       TCGA-05-4396       TCGA-05-4397       TCGA-05-4398 
"CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" 
      TCGA-05-4402       TCGA-05-4405       TCGA-05-4415       TCGA-05-4417 
"CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" 
      TCGA-05-4418       TCGA-05-4420       TCGA-05-4424       TCGA-05-4426 
"CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" 
      TCGA-05-4427       TCGA-05-4430       TCGA-05-4432       TCGA-05-4433 
  "CPXCR1 MUTATED" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" 
      TCGA-05-4434       TCGA-05-5420       TCGA-05-5423       TCGA-05-5425 
"CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" 
      TCGA-05-5429       TCGA-05-5715       TCGA-35-3615       TCGA-35-4122 
"CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" 
      TCGA-35-4123       TCGA-35-5375       TCGA-38-4625       TCGA-38-4626 
"CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" 
      TCGA-38-4627       TCGA-38-4628       TCGA-38-4629       TCGA-38-4630 
"CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" 
      TCGA-38-4631       TCGA-38-4632       TCGA-38-6178       TCGA-44-2655 
"CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" 
      TCGA-44-2656       TCGA-44-2657       TCGA-44-2659       TCGA-44-2661 
"CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" 
      TCGA-44-2662       TCGA-44-2665       TCGA-44-2666       TCGA-44-2668 
"CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" 
      TCGA-44-3396       TCGA-44-3398       TCGA-44-3918       TCGA-44-3919 
"CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" 
      TCGA-44-4112       TCGA-44-5643       TCGA-44-5645       TCGA-44-6144 
  "CPXCR1 MUTATED" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" 
      TCGA-44-6145       TCGA-44-6146       TCGA-44-6147       TCGA-44-6148 
"CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" 
      TCGA-44-6774       TCGA-44-6775       TCGA-44-6776       TCGA-44-6777 
  "CPXCR1 MUTATED" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" 
      TCGA-44-6778       TCGA-44-6779       TCGA-49-4486       TCGA-49-4487 
  "CPXCR1 MUTATED" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" 
      TCGA-49-4488       TCGA-49-4490       TCGA-49-4494       TCGA-49-4501 
"CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" 
      TCGA-49-4505       TCGA-49-4506       TCGA-49-4507       TCGA-49-4510 
"CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" 
      TCGA-49-4512       TCGA-49-4514       TCGA-49-6742       TCGA-49-6743 
"CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" 
      TCGA-49-6744       TCGA-49-6745       TCGA-50-5044       TCGA-50-5045 
"CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" 
      TCGA-50-5049       TCGA-50-5051       TCGA-50-5055       TCGA-50-5066 
"CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" 
      TCGA-50-5068       TCGA-50-5072       TCGA-50-5930       TCGA-50-5931 
"CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" 
      TCGA-50-5932       TCGA-50-5933       TCGA-50-5935       TCGA-50-5936 
"CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" 
      TCGA-50-5939       TCGA-50-5941       TCGA-50-5942       TCGA-50-5944 
"CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" 
      TCGA-50-5946       TCGA-50-6590       TCGA-50-6591       TCGA-50-6592 
"CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" 
      TCGA-50-6593       TCGA-50-6594       TCGA-50-6595       TCGA-50-6597 
"CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" 
      TCGA-55-1592       TCGA-55-1594       TCGA-55-1595       TCGA-55-1596 
"CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" 
      TCGA-55-5899       TCGA-55-6543       TCGA-55-6642       TCGA-55-6712 
"CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" 
      TCGA-64-1676       TCGA-64-1677       TCGA-64-1678       TCGA-64-1680 
"CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE"   "CPXCR1 MUTATED" "CPXCR1 WILD-TYPE" 
      TCGA-64-5774       TCGA-64-5775       TCGA-64-5778       TCGA-64-5779 
"CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" 
      TCGA-64-5781       TCGA-64-5815       TCGA-67-3770       TCGA-67-3771 
"CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE"   "CPXCR1 MUTATED" 
      TCGA-67-3772       TCGA-67-3773       TCGA-67-3774       TCGA-67-6215 
"CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" 
      TCGA-67-6216       TCGA-67-6217       TCGA-71-6725       TCGA-73-4658 
"CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" 
      TCGA-73-4659       TCGA-73-4662       TCGA-73-4666       TCGA-73-4668 
"CPXCR1 WILD-TYPE"   "CPXCR1 MUTATED" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" 
      TCGA-73-4670       TCGA-73-4675       TCGA-73-4676       TCGA-73-4677 
"CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" 
      TCGA-91-6828       TCGA-91-6829       TCGA-91-6831       TCGA-91-6835 
"CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" 
      TCGA-91-6836 
"CPXCR1 WILD-TYPE" 
[1] "hr="     "2.7e+07"
D46V2, continuous
D46V3, binary
[1] "tbl2"
                  cls
clus               [,1] [,2]
  CPXCR1 MUTATED      8    2
  CPXCR1 WILD-TYPE   85   77
        clus
vv       CPXCR1 MUTATED CPXCR1 WILD-TYPE
  FEMALE              8               85
  MALE                2               77
D46V4, continuous
[1] "Remove cluster labels:" "CPXCR1 MUTATED"        
clus
  CPXCR1 MUTATED CPXCR1 WILD-TYPE 
               1               11 
      TCGA-35-4122       TCGA-35-4123       TCGA-35-5375       TCGA-64-1677 
"CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" 
      TCGA-64-5778       TCGA-71-6725       TCGA-73-4659       TCGA-73-4666 
"CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" 
      TCGA-73-4668       TCGA-73-4676       TCGA-75-5122 
"CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" 
D46V5, multiclass
D46V6, multiclass
    clus
vv   CPXCR1 MUTATED CPXCR1 WILD-TYPE
  T1              4               37
  T2              5              103
  T3              1               13
  T4              0                8
D46V7, multiclass
       clus
vv      CPXCR1 MUTATED CPXCR1 WILD-TYPE
  N0                 8               87
  N1                 1               36
  N2+N3              1               34
D46V8, multiclass
    clus
vv   CPXCR1 MUTATED CPXCR1 WILD-TYPE
  M0              8              129
  M1              0                9
  MX              2               20
D46V9, multiclass
     clus
vv    CPXCR1 MUTATED CPXCR1 WILD-TYPE
  I                6               82
  II               3               30
  III              1               38
  IV               0                9
D46V10, binary
[1] "tbl2"
                  cls
clus               [,1] [,2]
  CPXCR1 MUTATED      1    9
  CPXCR1 WILD-TYPE   15  147
     clus
vv    CPXCR1 MUTATED CPXCR1 WILD-TYPE
  NO               1               15
  YES              9              147
D46V11, continuous
D46V12, continuous
D46V13, multiclass
                                             clus
vv                                            CPXCR1 MUTATED CPXCR1 WILD-TYPE
  CURRENT REFORMED SMOKER FOR < OR = 15 YEARS              4               58
  CURRENT REFORMED SMOKER FOR > 15 YEARS                   3               43
  CURRENT SMOKER                                           3               25
  LIFELONG NON-SMOKER                                      0               24
D46V14, continuous

Clustering(47) Variable = OR2T34 MUTATION ANALYSIS
D47V1, survival
                  sevent
clus2               0  1
  OR2T34 MUTATED    6  3
  OR2T34 WILD-TYPE 93 47
  OR2T34 MUTATED OR2T34 WILD-TYPE 
               9              140 
  OR2T34 MUTATED OR2T34 WILD-TYPE 
               3               47 
$`OR2T34 MUTATED`
TCGA-05-4424 TCGA-05-4427 TCGA-44-2656 TCGA-44-2657 TCGA-44-2668 TCGA-50-5935 
       30.02        26.01        19.10        13.15         8.09        21.47 
TCGA-50-6590 TCGA-50-6594 TCGA-67-3771 
       42.31        12.16         1.97 

$`OR2T34 WILD-TYPE`
TCGA-05-4249 TCGA-05-4250 TCGA-05-4382 TCGA-05-4384 TCGA-05-4390 TCGA-05-4396 
       38.07         3.98        19.92        14.01        37.02         9.96 
TCGA-05-4397 TCGA-05-4398 TCGA-05-4402 TCGA-05-4405 TCGA-05-4415 TCGA-05-4417 
       24.03        47.05         8.02        20.05         2.96        14.93 
TCGA-05-4418 TCGA-05-4420 TCGA-05-4426 TCGA-05-4430 TCGA-05-4432 TCGA-05-4433 
        8.98        29.95        26.01        25.02        25.02        24.00 
TCGA-05-4434 TCGA-05-5420 TCGA-05-5423 TCGA-05-5425 TCGA-05-5429 TCGA-05-5715 
       15.02         1.02         4.96         2.96         0.99         2.04 
TCGA-35-3615 TCGA-35-4122 TCGA-35-4123 TCGA-35-5375 TCGA-38-4625 TCGA-38-4626 
        0.46         7.36         5.95         8.68        47.61        85.32 
TCGA-38-4627 TCGA-38-4628 TCGA-38-4629 TCGA-38-4630 TCGA-38-4631 TCGA-38-4632 
       37.71        49.02        28.37        35.28        11.64        44.61 
TCGA-38-6178 TCGA-44-2655 TCGA-44-2659 TCGA-44-2661 TCGA-44-2662 TCGA-44-2665 
        5.19        18.87        17.39         3.39        15.78        13.15 
TCGA-44-2666 TCGA-44-3396 TCGA-44-3398 TCGA-44-3918 TCGA-44-3919 TCGA-44-4112 
        3.19        10.22         8.32         6.44         6.21         4.60 
TCGA-44-5643 TCGA-44-5645 TCGA-44-6144 TCGA-44-6145 TCGA-44-6146 TCGA-44-6147 
        3.48         6.84         0.30         3.35         9.93         7.76 
TCGA-44-6148 TCGA-44-6774 TCGA-44-6775 TCGA-44-6776 TCGA-44-6777 TCGA-44-6778 
        3.12         5.42         2.70        63.72        32.45        36.49 
TCGA-44-6779 TCGA-49-4486 TCGA-49-4487 TCGA-49-4488 TCGA-49-4490 TCGA-49-4494 
       16.41        76.21        28.11        28.57        12.66        35.54 
TCGA-49-4501 TCGA-49-4505 TCGA-49-4506 TCGA-49-4507 TCGA-49-4510 TCGA-49-4512 
       46.72        14.07        32.84         8.81        29.46        29.75 
TCGA-49-4514 TCGA-49-6742 TCGA-49-6743 TCGA-49-6744 TCGA-49-6745 TCGA-50-5044 
       43.20        15.02        12.13        12.99         4.93        20.48 
TCGA-50-5045 TCGA-50-5049 TCGA-50-5051 TCGA-50-5055 TCGA-50-5066 TCGA-50-5068 
       71.47        48.82        14.96        25.81         9.76        49.28 
TCGA-50-5072 TCGA-50-5930 TCGA-50-5931 TCGA-50-5932 TCGA-50-5933 TCGA-50-5936 
        8.05         9.27         8.78        35.87        77.88         8.45 
TCGA-50-5939 TCGA-50-5941 TCGA-50-5942 TCGA-50-5944 TCGA-50-5946 TCGA-50-6591 
       15.12         9.37         4.44        12.26        11.47         3.88 
TCGA-50-6592 TCGA-50-6593 TCGA-50-6595 TCGA-50-6597 TCGA-55-1592 TCGA-55-1594 
       25.51        11.05         6.21        33.37        23.05        38.73 
TCGA-55-1595 TCGA-55-1596 TCGA-55-5899 TCGA-55-6543 TCGA-55-6642 TCGA-55-6712 
       48.62        45.17         2.86         0.07        32.61         0.79 
TCGA-64-1676 TCGA-64-1677 TCGA-64-1678 TCGA-64-1680 TCGA-64-5774 TCGA-64-5775 
       56.81        20.65        39.09        37.02        83.84         0.10 
TCGA-64-5778 TCGA-64-5779 TCGA-64-5781 TCGA-64-5815 TCGA-67-3770 TCGA-67-3772 
       30.44        16.67        39.52         7.33         0.99         0.59 
TCGA-67-3773 TCGA-67-3774 TCGA-67-6215 TCGA-67-6216 TCGA-67-6217 TCGA-71-6725 
        2.04         0.59         0.89         0.69        13.87         2.01 
TCGA-73-4658 TCGA-73-4659 TCGA-73-4662 TCGA-73-4666 TCGA-73-4668 TCGA-73-4670 
       52.57        23.38        29.95        20.28        15.35         0.46 
TCGA-73-4675 TCGA-73-4676 TCGA-73-4677 TCGA-91-6828 TCGA-91-6829 TCGA-91-6831 
        1.32         4.01         1.25         1.22        41.33         1.28 
TCGA-91-6835 TCGA-91-6836 
        1.15         0.36 

  OR2T34 MUTATED OR2T34 WILD-TYPE 
            1.97             0.07 
  OR2T34 MUTATED OR2T34 WILD-TYPE 
           42.31            85.32 
  OR2T34 MUTATED OR2T34 WILD-TYPE 
           19.10            13.51 
[1] "2.0 - 42.3 (19.1)" "0.1 - 85.3 (13.5)"
      TCGA-05-4249       TCGA-05-4250       TCGA-05-4382       TCGA-05-4384 
"OR2T34 WILD-TYPE" "OR2T34 WILD-TYPE" "OR2T34 WILD-TYPE" "OR2T34 WILD-TYPE" 
      TCGA-05-4390       TCGA-05-4396       TCGA-05-4397       TCGA-05-4398 
"OR2T34 WILD-TYPE" "OR2T34 WILD-TYPE" "OR2T34 WILD-TYPE" "OR2T34 WILD-TYPE" 
      TCGA-05-4402       TCGA-05-4405       TCGA-05-4415       TCGA-05-4417 
"OR2T34 WILD-TYPE" "OR2T34 WILD-TYPE" "OR2T34 WILD-TYPE" "OR2T34 WILD-TYPE" 
      TCGA-05-4418       TCGA-05-4420       TCGA-05-4424       TCGA-05-4426 
"OR2T34 WILD-TYPE" "OR2T34 WILD-TYPE"   "OR2T34 MUTATED" "OR2T34 WILD-TYPE" 
      TCGA-05-4427       TCGA-05-4430       TCGA-05-4432       TCGA-05-4433 
  "OR2T34 MUTATED" "OR2T34 WILD-TYPE" "OR2T34 WILD-TYPE" "OR2T34 WILD-TYPE" 
      TCGA-05-4434       TCGA-05-5420       TCGA-05-5423       TCGA-05-5425 
"OR2T34 WILD-TYPE" "OR2T34 WILD-TYPE" "OR2T34 WILD-TYPE" "OR2T34 WILD-TYPE" 
      TCGA-05-5429       TCGA-05-5715       TCGA-35-3615       TCGA-35-4122 
"OR2T34 WILD-TYPE" "OR2T34 WILD-TYPE" "OR2T34 WILD-TYPE" "OR2T34 WILD-TYPE" 
      TCGA-35-4123       TCGA-35-5375       TCGA-38-4625       TCGA-38-4626 
"OR2T34 WILD-TYPE" "OR2T34 WILD-TYPE" "OR2T34 WILD-TYPE" "OR2T34 WILD-TYPE" 
      TCGA-38-4627       TCGA-38-4628       TCGA-38-4629       TCGA-38-4630 
"OR2T34 WILD-TYPE" "OR2T34 WILD-TYPE" "OR2T34 WILD-TYPE" "OR2T34 WILD-TYPE" 
      TCGA-38-4631       TCGA-38-4632       TCGA-38-6178       TCGA-44-2655 
"OR2T34 WILD-TYPE" "OR2T34 WILD-TYPE" "OR2T34 WILD-TYPE" "OR2T34 WILD-TYPE" 
      TCGA-44-2656       TCGA-44-2657       TCGA-44-2659       TCGA-44-2661 
  "OR2T34 MUTATED"   "OR2T34 MUTATED" "OR2T34 WILD-TYPE" "OR2T34 WILD-TYPE" 
      TCGA-44-2662       TCGA-44-2665       TCGA-44-2666       TCGA-44-2668 
"OR2T34 WILD-TYPE" "OR2T34 WILD-TYPE" "OR2T34 WILD-TYPE"   "OR2T34 MUTATED" 
      TCGA-44-3396       TCGA-44-3398       TCGA-44-3918       TCGA-44-3919 
"OR2T34 WILD-TYPE" "OR2T34 WILD-TYPE" "OR2T34 WILD-TYPE" "OR2T34 WILD-TYPE" 
      TCGA-44-4112       TCGA-44-5643       TCGA-44-5645       TCGA-44-6144 
"OR2T34 WILD-TYPE" "OR2T34 WILD-TYPE" "OR2T34 WILD-TYPE" "OR2T34 WILD-TYPE" 
      TCGA-44-6145       TCGA-44-6146       TCGA-44-6147       TCGA-44-6148 
"OR2T34 WILD-TYPE" "OR2T34 WILD-TYPE" "OR2T34 WILD-TYPE" "OR2T34 WILD-TYPE" 
      TCGA-44-6774       TCGA-44-6775       TCGA-44-6776       TCGA-44-6777 
"OR2T34 WILD-TYPE" "OR2T34 WILD-TYPE" "OR2T34 WILD-TYPE" "OR2T34 WILD-TYPE" 
      TCGA-44-6778       TCGA-44-6779       TCGA-49-4486       TCGA-49-4487 
"OR2T34 WILD-TYPE" "OR2T34 WILD-TYPE" "OR2T34 WILD-TYPE" "OR2T34 WILD-TYPE" 
      TCGA-49-4488       TCGA-49-4490       TCGA-49-4494       TCGA-49-4501 
"OR2T34 WILD-TYPE" "OR2T34 WILD-TYPE" "OR2T34 WILD-TYPE" "OR2T34 WILD-TYPE" 
      TCGA-49-4505       TCGA-49-4506       TCGA-49-4507       TCGA-49-4510 
"OR2T34 WILD-TYPE" "OR2T34 WILD-TYPE" "OR2T34 WILD-TYPE" "OR2T34 WILD-TYPE" 
      TCGA-49-4512       TCGA-49-4514       TCGA-49-6742       TCGA-49-6743 
"OR2T34 WILD-TYPE" "OR2T34 WILD-TYPE" "OR2T34 WILD-TYPE" "OR2T34 WILD-TYPE" 
      TCGA-49-6744       TCGA-49-6745       TCGA-50-5044       TCGA-50-5045 
"OR2T34 WILD-TYPE" "OR2T34 WILD-TYPE" "OR2T34 WILD-TYPE" "OR2T34 WILD-TYPE" 
      TCGA-50-5049       TCGA-50-5051       TCGA-50-5055       TCGA-50-5066 
"OR2T34 WILD-TYPE" "OR2T34 WILD-TYPE" "OR2T34 WILD-TYPE" "OR2T34 WILD-TYPE" 
      TCGA-50-5068       TCGA-50-5072       TCGA-50-5930       TCGA-50-5931 
"OR2T34 WILD-TYPE" "OR2T34 WILD-TYPE" "OR2T34 WILD-TYPE" "OR2T34 WILD-TYPE" 
      TCGA-50-5932       TCGA-50-5933       TCGA-50-5935       TCGA-50-5936 
"OR2T34 WILD-TYPE" "OR2T34 WILD-TYPE"   "OR2T34 MUTATED" "OR2T34 WILD-TYPE" 
      TCGA-50-5939       TCGA-50-5941       TCGA-50-5942       TCGA-50-5944 
"OR2T34 WILD-TYPE" "OR2T34 WILD-TYPE" "OR2T34 WILD-TYPE" "OR2T34 WILD-TYPE" 
      TCGA-50-5946       TCGA-50-6590       TCGA-50-6591       TCGA-50-6592 
"OR2T34 WILD-TYPE"   "OR2T34 MUTATED" "OR2T34 WILD-TYPE" "OR2T34 WILD-TYPE" 
      TCGA-50-6593       TCGA-50-6594       TCGA-50-6595       TCGA-50-6597 
"OR2T34 WILD-TYPE"   "OR2T34 MUTATED" "OR2T34 WILD-TYPE" "OR2T34 WILD-TYPE" 
      TCGA-55-1592       TCGA-55-1594       TCGA-55-1595       TCGA-55-1596 
"OR2T34 WILD-TYPE" "OR2T34 WILD-TYPE" "OR2T34 WILD-TYPE" "OR2T34 WILD-TYPE" 
      TCGA-55-5899       TCGA-55-6543       TCGA-55-6642       TCGA-55-6712 
"OR2T34 WILD-TYPE" "OR2T34 WILD-TYPE" "OR2T34 WILD-TYPE" "OR2T34 WILD-TYPE" 
      TCGA-64-1676       TCGA-64-1677       TCGA-64-1678       TCGA-64-1680 
"OR2T34 WILD-TYPE" "OR2T34 WILD-TYPE" "OR2T34 WILD-TYPE" "OR2T34 WILD-TYPE" 
      TCGA-64-5774       TCGA-64-5775       TCGA-64-5778       TCGA-64-5779 
"OR2T34 WILD-TYPE" "OR2T34 WILD-TYPE" "OR2T34 WILD-TYPE" "OR2T34 WILD-TYPE" 
      TCGA-64-5781       TCGA-64-5815       TCGA-67-3770       TCGA-67-3771 
"OR2T34 WILD-TYPE" "OR2T34 WILD-TYPE" "OR2T34 WILD-TYPE"   "OR2T34 MUTATED" 
      TCGA-67-3772       TCGA-67-3773       TCGA-67-3774       TCGA-67-6215 
"OR2T34 WILD-TYPE" "OR2T34 WILD-TYPE" "OR2T34 WILD-TYPE" "OR2T34 WILD-TYPE" 
      TCGA-67-6216       TCGA-67-6217       TCGA-71-6725       TCGA-73-4658 
"OR2T34 WILD-TYPE" "OR2T34 WILD-TYPE" "OR2T34 WILD-TYPE" "OR2T34 WILD-TYPE" 
      TCGA-73-4659       TCGA-73-4662       TCGA-73-4666       TCGA-73-4668 
"OR2T34 WILD-TYPE" "OR2T34 WILD-TYPE" "OR2T34 WILD-TYPE" "OR2T34 WILD-TYPE" 
      TCGA-73-4670       TCGA-73-4675       TCGA-73-4676       TCGA-73-4677 
"OR2T34 WILD-TYPE" "OR2T34 WILD-TYPE" "OR2T34 WILD-TYPE" "OR2T34 WILD-TYPE" 
      TCGA-91-6828       TCGA-91-6829       TCGA-91-6831       TCGA-91-6835 
"OR2T34 WILD-TYPE" "OR2T34 WILD-TYPE" "OR2T34 WILD-TYPE" "OR2T34 WILD-TYPE" 
      TCGA-91-6836 
"OR2T34 WILD-TYPE" 
      TCGA-05-4249       TCGA-05-4250       TCGA-05-4382       TCGA-05-4384 
"OR2T34 WILD-TYPE" "OR2T34 WILD-TYPE" "OR2T34 WILD-TYPE" "OR2T34 WILD-TYPE" 
      TCGA-05-4390       TCGA-05-4396       TCGA-05-4397       TCGA-05-4398 
"OR2T34 WILD-TYPE" "OR2T34 WILD-TYPE" "OR2T34 WILD-TYPE" "OR2T34 WILD-TYPE" 
      TCGA-05-4402       TCGA-05-4405       TCGA-05-4415       TCGA-05-4417 
"OR2T34 WILD-TYPE" "OR2T34 WILD-TYPE" "OR2T34 WILD-TYPE" "OR2T34 WILD-TYPE" 
      TCGA-05-4418       TCGA-05-4420       TCGA-05-4424       TCGA-05-4426 
"OR2T34 WILD-TYPE" "OR2T34 WILD-TYPE"   "OR2T34 MUTATED" "OR2T34 WILD-TYPE" 
      TCGA-05-4427       TCGA-05-4430       TCGA-05-4432       TCGA-05-4433 
  "OR2T34 MUTATED" "OR2T34 WILD-TYPE" "OR2T34 WILD-TYPE" "OR2T34 WILD-TYPE" 
      TCGA-05-4434       TCGA-05-5420       TCGA-05-5423       TCGA-05-5425 
"OR2T34 WILD-TYPE" "OR2T34 WILD-TYPE" "OR2T34 WILD-TYPE" "OR2T34 WILD-TYPE" 
      TCGA-05-5429       TCGA-05-5715       TCGA-35-3615       TCGA-35-4122 
"OR2T34 WILD-TYPE" "OR2T34 WILD-TYPE" "OR2T34 WILD-TYPE" "OR2T34 WILD-TYPE" 
      TCGA-35-4123       TCGA-35-5375       TCGA-38-4625       TCGA-38-4626 
"OR2T34 WILD-TYPE" "OR2T34 WILD-TYPE" "OR2T34 WILD-TYPE" "OR2T34 WILD-TYPE" 
      TCGA-38-4627       TCGA-38-4628       TCGA-38-4629       TCGA-38-4630 
"OR2T34 WILD-TYPE" "OR2T34 WILD-TYPE" "OR2T34 WILD-TYPE" "OR2T34 WILD-TYPE" 
      TCGA-38-4631       TCGA-38-4632       TCGA-38-6178       TCGA-44-2655 
"OR2T34 WILD-TYPE" "OR2T34 WILD-TYPE" "OR2T34 WILD-TYPE" "OR2T34 WILD-TYPE" 
      TCGA-44-2656       TCGA-44-2657       TCGA-44-2659       TCGA-44-2661 
  "OR2T34 MUTATED"   "OR2T34 MUTATED" "OR2T34 WILD-TYPE" "OR2T34 WILD-TYPE" 
      TCGA-44-2662       TCGA-44-2665       TCGA-44-2666       TCGA-44-2668 
"OR2T34 WILD-TYPE" "OR2T34 WILD-TYPE" "OR2T34 WILD-TYPE"   "OR2T34 MUTATED" 
      TCGA-44-3396       TCGA-44-3398       TCGA-44-3918       TCGA-44-3919 
"OR2T34 WILD-TYPE" "OR2T34 WILD-TYPE" "OR2T34 WILD-TYPE" "OR2T34 WILD-TYPE" 
      TCGA-44-4112       TCGA-44-5643       TCGA-44-5645       TCGA-44-6144 
"OR2T34 WILD-TYPE" "OR2T34 WILD-TYPE" "OR2T34 WILD-TYPE" "OR2T34 WILD-TYPE" 
      TCGA-44-6145       TCGA-44-6146       TCGA-44-6147       TCGA-44-6148 
"OR2T34 WILD-TYPE" "OR2T34 WILD-TYPE" "OR2T34 WILD-TYPE" "OR2T34 WILD-TYPE" 
      TCGA-44-6774       TCGA-44-6775       TCGA-44-6776       TCGA-44-6777 
"OR2T34 WILD-TYPE" "OR2T34 WILD-TYPE" "OR2T34 WILD-TYPE" "OR2T34 WILD-TYPE" 
      TCGA-44-6778       TCGA-44-6779       TCGA-49-4486       TCGA-49-4487 
"OR2T34 WILD-TYPE" "OR2T34 WILD-TYPE" "OR2T34 WILD-TYPE" "OR2T34 WILD-TYPE" 
      TCGA-49-4488       TCGA-49-4490       TCGA-49-4494       TCGA-49-4501 
"OR2T34 WILD-TYPE" "OR2T34 WILD-TYPE" "OR2T34 WILD-TYPE" "OR2T34 WILD-TYPE" 
      TCGA-49-4505       TCGA-49-4506       TCGA-49-4507       TCGA-49-4510 
"OR2T34 WILD-TYPE" "OR2T34 WILD-TYPE" "OR2T34 WILD-TYPE" "OR2T34 WILD-TYPE" 
      TCGA-49-4512       TCGA-49-4514       TCGA-49-6742       TCGA-49-6743 
"OR2T34 WILD-TYPE" "OR2T34 WILD-TYPE" "OR2T34 WILD-TYPE" "OR2T34 WILD-TYPE" 
      TCGA-49-6744       TCGA-49-6745       TCGA-50-5044       TCGA-50-5045 
"OR2T34 WILD-TYPE" "OR2T34 WILD-TYPE" "OR2T34 WILD-TYPE" "OR2T34 WILD-TYPE" 
      TCGA-50-5049       TCGA-50-5051       TCGA-50-5055       TCGA-50-5066 
"OR2T34 WILD-TYPE" "OR2T34 WILD-TYPE" "OR2T34 WILD-TYPE" "OR2T34 WILD-TYPE" 
      TCGA-50-5068       TCGA-50-5072       TCGA-50-5930       TCGA-50-5931 
"OR2T34 WILD-TYPE" "OR2T34 WILD-TYPE" "OR2T34 WILD-TYPE" "OR2T34 WILD-TYPE" 
      TCGA-50-5932       TCGA-50-5933       TCGA-50-5935       TCGA-50-5936 
"OR2T34 WILD-TYPE" "OR2T34 WILD-TYPE"   "OR2T34 MUTATED" "OR2T34 WILD-TYPE" 
      TCGA-50-5939       TCGA-50-5941       TCGA-50-5942       TCGA-50-5944 
"OR2T34 WILD-TYPE" "OR2T34 WILD-TYPE" "OR2T34 WILD-TYPE" "OR2T34 WILD-TYPE" 
      TCGA-50-5946       TCGA-50-6590       TCGA-50-6591       TCGA-50-6592 
"OR2T34 WILD-TYPE"   "OR2T34 MUTATED" "OR2T34 WILD-TYPE" "OR2T34 WILD-TYPE" 
      TCGA-50-6593       TCGA-50-6594       TCGA-50-6595       TCGA-50-6597 
"OR2T34 WILD-TYPE"   "OR2T34 MUTATED" "OR2T34 WILD-TYPE" "OR2T34 WILD-TYPE" 
      TCGA-55-1592       TCGA-55-1594       TCGA-55-1595       TCGA-55-1596 
"OR2T34 WILD-TYPE" "OR2T34 WILD-TYPE" "OR2T34 WILD-TYPE" "OR2T34 WILD-TYPE" 
      TCGA-55-5899       TCGA-55-6543       TCGA-55-6642       TCGA-55-6712 
"OR2T34 WILD-TYPE" "OR2T34 WILD-TYPE" "OR2T34 WILD-TYPE" "OR2T34 WILD-TYPE" 
      TCGA-64-1676       TCGA-64-1677       TCGA-64-1678       TCGA-64-1680 
"OR2T34 WILD-TYPE" "OR2T34 WILD-TYPE" "OR2T34 WILD-TYPE" "OR2T34 WILD-TYPE" 
      TCGA-64-5774       TCGA-64-5775       TCGA-64-5778       TCGA-64-5779 
"OR2T34 WILD-TYPE" "OR2T34 WILD-TYPE" "OR2T34 WILD-TYPE" "OR2T34 WILD-TYPE" 
      TCGA-64-5781       TCGA-64-5815       TCGA-67-3770       TCGA-67-3771 
"OR2T34 WILD-TYPE" "OR2T34 WILD-TYPE" "OR2T34 WILD-TYPE"   "OR2T34 MUTATED" 
      TCGA-67-3772       TCGA-67-3773       TCGA-67-3774       TCGA-67-6215 
"OR2T34 WILD-TYPE" "OR2T34 WILD-TYPE" "OR2T34 WILD-TYPE" "OR2T34 WILD-TYPE" 
      TCGA-67-6216       TCGA-67-6217       TCGA-71-6725       TCGA-73-4658 
"OR2T34 WILD-TYPE" "OR2T34 WILD-TYPE" "OR2T34 WILD-TYPE" "OR2T34 WILD-TYPE" 
      TCGA-73-4659       TCGA-73-4662       TCGA-73-4666       TCGA-73-4668 
"OR2T34 WILD-TYPE" "OR2T34 WILD-TYPE" "OR2T34 WILD-TYPE" "OR2T34 WILD-TYPE" 
      TCGA-73-4670       TCGA-73-4675       TCGA-73-4676       TCGA-73-4677 
"OR2T34 WILD-TYPE" "OR2T34 WILD-TYPE" "OR2T34 WILD-TYPE" "OR2T34 WILD-TYPE" 
      TCGA-91-6828       TCGA-91-6829       TCGA-91-6831       TCGA-91-6835 
"OR2T34 WILD-TYPE" "OR2T34 WILD-TYPE" "OR2T34 WILD-TYPE" "OR2T34 WILD-TYPE" 
      TCGA-91-6836 
"OR2T34 WILD-TYPE" 
      TCGA-05-4249       TCGA-05-4250       TCGA-05-4382       TCGA-05-4384 
"OR2T34 WILD-TYPE" "OR2T34 WILD-TYPE" "OR2T34 WILD-TYPE" "OR2T34 WILD-TYPE" 
      TCGA-05-4390       TCGA-05-4396       TCGA-05-4397       TCGA-05-4398 
"OR2T34 WILD-TYPE" "OR2T34 WILD-TYPE" "OR2T34 WILD-TYPE" "OR2T34 WILD-TYPE" 
      TCGA-05-4402       TCGA-05-4405       TCGA-05-4415       TCGA-05-4417 
"OR2T34 WILD-TYPE" "OR2T34 WILD-TYPE" "OR2T34 WILD-TYPE" "OR2T34 WILD-TYPE" 
      TCGA-05-4418       TCGA-05-4420       TCGA-05-4424       TCGA-05-4426 
"OR2T34 WILD-TYPE" "OR2T34 WILD-TYPE"   "OR2T34 MUTATED" "OR2T34 WILD-TYPE" 
      TCGA-05-4427       TCGA-05-4430       TCGA-05-4432       TCGA-05-4433 
  "OR2T34 MUTATED" "OR2T34 WILD-TYPE" "OR2T34 WILD-TYPE" "OR2T34 WILD-TYPE" 
      TCGA-05-4434       TCGA-05-5420       TCGA-05-5423       TCGA-05-5425 
"OR2T34 WILD-TYPE" "OR2T34 WILD-TYPE" "OR2T34 WILD-TYPE" "OR2T34 WILD-TYPE" 
      TCGA-05-5429       TCGA-05-5715       TCGA-35-3615       TCGA-35-4122 
"OR2T34 WILD-TYPE" "OR2T34 WILD-TYPE" "OR2T34 WILD-TYPE" "OR2T34 WILD-TYPE" 
      TCGA-35-4123       TCGA-35-5375       TCGA-38-4625       TCGA-38-4626 
"OR2T34 WILD-TYPE" "OR2T34 WILD-TYPE" "OR2T34 WILD-TYPE" "OR2T34 WILD-TYPE" 
      TCGA-38-4627       TCGA-38-4628       TCGA-38-4629       TCGA-38-4630 
"OR2T34 WILD-TYPE" "OR2T34 WILD-TYPE" "OR2T34 WILD-TYPE" "OR2T34 WILD-TYPE" 
      TCGA-38-4631       TCGA-38-4632       TCGA-38-6178       TCGA-44-2655 
"OR2T34 WILD-TYPE" "OR2T34 WILD-TYPE" "OR2T34 WILD-TYPE" "OR2T34 WILD-TYPE" 
      TCGA-44-2656       TCGA-44-2657       TCGA-44-2659       TCGA-44-2661 
  "OR2T34 MUTATED"   "OR2T34 MUTATED" "OR2T34 WILD-TYPE" "OR2T34 WILD-TYPE" 
      TCGA-44-2662       TCGA-44-2665       TCGA-44-2666       TCGA-44-2668 
"OR2T34 WILD-TYPE" "OR2T34 WILD-TYPE" "OR2T34 WILD-TYPE"   "OR2T34 MUTATED" 
      TCGA-44-3396       TCGA-44-3398       TCGA-44-3918       TCGA-44-3919 
"OR2T34 WILD-TYPE" "OR2T34 WILD-TYPE" "OR2T34 WILD-TYPE" "OR2T34 WILD-TYPE" 
      TCGA-44-4112       TCGA-44-5643       TCGA-44-5645       TCGA-44-6144 
"OR2T34 WILD-TYPE" "OR2T34 WILD-TYPE" "OR2T34 WILD-TYPE" "OR2T34 WILD-TYPE" 
      TCGA-44-6145       TCGA-44-6146       TCGA-44-6147       TCGA-44-6148 
"OR2T34 WILD-TYPE" "OR2T34 WILD-TYPE" "OR2T34 WILD-TYPE" "OR2T34 WILD-TYPE" 
      TCGA-44-6774       TCGA-44-6775       TCGA-44-6776       TCGA-44-6777 
"OR2T34 WILD-TYPE" "OR2T34 WILD-TYPE" "OR2T34 WILD-TYPE" "OR2T34 WILD-TYPE" 
      TCGA-44-6778       TCGA-44-6779       TCGA-49-4486       TCGA-49-4487 
"OR2T34 WILD-TYPE" "OR2T34 WILD-TYPE" "OR2T34 WILD-TYPE" "OR2T34 WILD-TYPE" 
      TCGA-49-4488       TCGA-49-4490       TCGA-49-4494       TCGA-49-4501 
"OR2T34 WILD-TYPE" "OR2T34 WILD-TYPE" "OR2T34 WILD-TYPE" "OR2T34 WILD-TYPE" 
      TCGA-49-4505       TCGA-49-4506       TCGA-49-4507       TCGA-49-4510 
"OR2T34 WILD-TYPE" "OR2T34 WILD-TYPE" "OR2T34 WILD-TYPE" "OR2T34 WILD-TYPE" 
      TCGA-49-4512       TCGA-49-4514       TCGA-49-6742       TCGA-49-6743 
"OR2T34 WILD-TYPE" "OR2T34 WILD-TYPE" "OR2T34 WILD-TYPE" "OR2T34 WILD-TYPE" 
      TCGA-49-6744       TCGA-49-6745       TCGA-50-5044       TCGA-50-5045 
"OR2T34 WILD-TYPE" "OR2T34 WILD-TYPE" "OR2T34 WILD-TYPE" "OR2T34 WILD-TYPE" 
      TCGA-50-5049       TCGA-50-5051       TCGA-50-5055       TCGA-50-5066 
"OR2T34 WILD-TYPE" "OR2T34 WILD-TYPE" "OR2T34 WILD-TYPE" "OR2T34 WILD-TYPE" 
      TCGA-50-5068       TCGA-50-5072       TCGA-50-5930       TCGA-50-5931 
"OR2T34 WILD-TYPE" "OR2T34 WILD-TYPE" "OR2T34 WILD-TYPE" "OR2T34 WILD-TYPE" 
      TCGA-50-5932       TCGA-50-5933       TCGA-50-5935       TCGA-50-5936 
"OR2T34 WILD-TYPE" "OR2T34 WILD-TYPE"   "OR2T34 MUTATED" "OR2T34 WILD-TYPE" 
      TCGA-50-5939       TCGA-50-5941       TCGA-50-5942       TCGA-50-5944 
"OR2T34 WILD-TYPE" "OR2T34 WILD-TYPE" "OR2T34 WILD-TYPE" "OR2T34 WILD-TYPE" 
      TCGA-50-5946       TCGA-50-6590       TCGA-50-6591       TCGA-50-6592 
"OR2T34 WILD-TYPE"   "OR2T34 MUTATED" "OR2T34 WILD-TYPE" "OR2T34 WILD-TYPE" 
      TCGA-50-6593       TCGA-50-6594       TCGA-50-6595       TCGA-50-6597 
"OR2T34 WILD-TYPE"   "OR2T34 MUTATED" "OR2T34 WILD-TYPE" "OR2T34 WILD-TYPE" 
      TCGA-55-1592       TCGA-55-1594       TCGA-55-1595       TCGA-55-1596 
"OR2T34 WILD-TYPE" "OR2T34 WILD-TYPE" "OR2T34 WILD-TYPE" "OR2T34 WILD-TYPE" 
      TCGA-55-5899       TCGA-55-6543       TCGA-55-6642       TCGA-55-6712 
"OR2T34 WILD-TYPE" "OR2T34 WILD-TYPE" "OR2T34 WILD-TYPE" "OR2T34 WILD-TYPE" 
      TCGA-64-1676       TCGA-64-1677       TCGA-64-1678       TCGA-64-1680 
"OR2T34 WILD-TYPE" "OR2T34 WILD-TYPE" "OR2T34 WILD-TYPE" "OR2T34 WILD-TYPE" 
      TCGA-64-5774       TCGA-64-5775       TCGA-64-5778       TCGA-64-5779 
"OR2T34 WILD-TYPE" "OR2T34 WILD-TYPE" "OR2T34 WILD-TYPE" "OR2T34 WILD-TYPE" 
      TCGA-64-5781       TCGA-64-5815       TCGA-67-3770       TCGA-67-3771 
"OR2T34 WILD-TYPE" "OR2T34 WILD-TYPE" "OR2T34 WILD-TYPE"   "OR2T34 MUTATED" 
      TCGA-67-3772       TCGA-67-3773       TCGA-67-3774       TCGA-67-6215 
"OR2T34 WILD-TYPE" "OR2T34 WILD-TYPE" "OR2T34 WILD-TYPE" "OR2T34 WILD-TYPE" 
      TCGA-67-6216       TCGA-67-6217       TCGA-71-6725       TCGA-73-4658 
"OR2T34 WILD-TYPE" "OR2T34 WILD-TYPE" "OR2T34 WILD-TYPE" "OR2T34 WILD-TYPE" 
      TCGA-73-4659       TCGA-73-4662       TCGA-73-4666       TCGA-73-4668 
"OR2T34 WILD-TYPE" "OR2T34 WILD-TYPE" "OR2T34 WILD-TYPE" "OR2T34 WILD-TYPE" 
      TCGA-73-4670       TCGA-73-4675       TCGA-73-4676       TCGA-73-4677 
"OR2T34 WILD-TYPE" "OR2T34 WILD-TYPE" "OR2T34 WILD-TYPE" "OR2T34 WILD-TYPE" 
      TCGA-91-6828       TCGA-91-6829       TCGA-91-6831       TCGA-91-6835 
"OR2T34 WILD-TYPE" "OR2T34 WILD-TYPE" "OR2T34 WILD-TYPE" "OR2T34 WILD-TYPE" 
      TCGA-91-6836 
"OR2T34 WILD-TYPE" 
[1] "hr=" "1.2"
D47V2, continuous
D47V3, binary
[1] "tbl2"
                  cls
clus               [,1] [,2]
  OR2T34 MUTATED      6    4
  OR2T34 WILD-TYPE   87   75
        clus
vv       OR2T34 MUTATED OR2T34 WILD-TYPE
  FEMALE              6               87
  MALE                4               75
D47V4, continuous
[1] "Remove cluster labels:" "OR2T34 MUTATED"        
clus
  OR2T34 MUTATED OR2T34 WILD-TYPE 
               1               11 
      TCGA-35-4122       TCGA-35-4123       TCGA-35-5375       TCGA-64-1677 
"OR2T34 WILD-TYPE" "OR2T34 WILD-TYPE" "OR2T34 WILD-TYPE" "OR2T34 WILD-TYPE" 
      TCGA-64-5778       TCGA-71-6725       TCGA-73-4659       TCGA-73-4662 
"OR2T34 WILD-TYPE" "OR2T34 WILD-TYPE" "OR2T34 WILD-TYPE" "OR2T34 WILD-TYPE" 
      TCGA-73-4666       TCGA-73-4668       TCGA-73-4676 
"OR2T34 WILD-TYPE" "OR2T34 WILD-TYPE" "OR2T34 WILD-TYPE" 
D47V5, multiclass
D47V6, multiclass
    clus
vv   OR2T34 MUTATED OR2T34 WILD-TYPE
  T1              2               39
  T2              6              102
  T3              2               12
  T4              0                8
D47V7, multiclass
       clus
vv      OR2T34 MUTATED OR2T34 WILD-TYPE
  N0                 7               88
  N1                 1               36
  N2+N3              1               34
D47V8, multiclass
    clus
vv   OR2T34 MUTATED OR2T34 WILD-TYPE
  M0             10              127
  M1              0                9
  MX              0               22
D47V9, multiclass
     clus
vv    OR2T34 MUTATED OR2T34 WILD-TYPE
  I                7               81
  II               2               31
  III              1               38
  IV               0                9
D47V10, binary
[1] "tbl2"
                  cls
clus               [,1] [,2]
  OR2T34 MUTATED      1    9
  OR2T34 WILD-TYPE   15  147
     clus
vv    OR2T34 MUTATED OR2T34 WILD-TYPE
  NO               1               15
  YES              9              147
D47V11, continuous
D47V12, continuous
D47V13, multiclass
                                             clus
vv                                            OR2T34 MUTATED OR2T34 WILD-TYPE
  CURRENT REFORMED SMOKER FOR < OR = 15 YEARS              8               54
  CURRENT REFORMED SMOKER FOR > 15 YEARS                   1               45
  CURRENT SMOKER                                           0               28
  LIFELONG NON-SMOKER                                      0               24
D47V14, continuous

Clustering(48) Variable = THEMIS MUTATION ANALYSIS
D48V1, survival
                  sevent
clus2               0  1
  THEMIS MUTATED    4  4
  THEMIS WILD-TYPE 95 46
  THEMIS MUTATED THEMIS WILD-TYPE 
               8              141 
  THEMIS MUTATED THEMIS WILD-TYPE 
               4               46 
$`THEMIS MUTATED`
TCGA-05-4396 TCGA-05-4418 TCGA-35-4123 TCGA-44-4112 TCGA-49-4501 TCGA-55-1592 
        9.96         8.98         5.95         4.60        46.72        23.05 
TCGA-67-3772 TCGA-73-4670 
        0.59         0.46 

$`THEMIS WILD-TYPE`
TCGA-05-4249 TCGA-05-4250 TCGA-05-4382 TCGA-05-4384 TCGA-05-4390 TCGA-05-4397 
       38.07         3.98        19.92        14.01        37.02        24.03 
TCGA-05-4398 TCGA-05-4402 TCGA-05-4405 TCGA-05-4415 TCGA-05-4417 TCGA-05-4420 
       47.05         8.02        20.05         2.96        14.93        29.95 
TCGA-05-4424 TCGA-05-4426 TCGA-05-4427 TCGA-05-4430 TCGA-05-4432 TCGA-05-4433 
       30.02        26.01        26.01        25.02        25.02        24.00 
TCGA-05-4434 TCGA-05-5420 TCGA-05-5423 TCGA-05-5425 TCGA-05-5429 TCGA-05-5715 
       15.02         1.02         4.96         2.96         0.99         2.04 
TCGA-35-3615 TCGA-35-4122 TCGA-35-5375 TCGA-38-4625 TCGA-38-4626 TCGA-38-4627 
        0.46         7.36         8.68        47.61        85.32        37.71 
TCGA-38-4628 TCGA-38-4629 TCGA-38-4630 TCGA-38-4631 TCGA-38-4632 TCGA-38-6178 
       49.02        28.37        35.28        11.64        44.61         5.19 
TCGA-44-2655 TCGA-44-2656 TCGA-44-2657 TCGA-44-2659 TCGA-44-2661 TCGA-44-2662 
       18.87        19.10        13.15        17.39         3.39        15.78 
TCGA-44-2665 TCGA-44-2666 TCGA-44-2668 TCGA-44-3396 TCGA-44-3398 TCGA-44-3918 
       13.15         3.19         8.09        10.22         8.32         6.44 
TCGA-44-3919 TCGA-44-5643 TCGA-44-5645 TCGA-44-6144 TCGA-44-6145 TCGA-44-6146 
        6.21         3.48         6.84         0.30         3.35         9.93 
TCGA-44-6147 TCGA-44-6148 TCGA-44-6774 TCGA-44-6775 TCGA-44-6776 TCGA-44-6777 
        7.76         3.12         5.42         2.70        63.72        32.45 
TCGA-44-6778 TCGA-44-6779 TCGA-49-4486 TCGA-49-4487 TCGA-49-4488 TCGA-49-4490 
       36.49        16.41        76.21        28.11        28.57        12.66 
TCGA-49-4494 TCGA-49-4505 TCGA-49-4506 TCGA-49-4507 TCGA-49-4510 TCGA-49-4512 
       35.54        14.07        32.84         8.81        29.46        29.75 
TCGA-49-4514 TCGA-49-6742 TCGA-49-6743 TCGA-49-6744 TCGA-49-6745 TCGA-50-5044 
       43.20        15.02        12.13        12.99         4.93        20.48 
TCGA-50-5045 TCGA-50-5049 TCGA-50-5051 TCGA-50-5055 TCGA-50-5066 TCGA-50-5068 
       71.47        48.82        14.96        25.81         9.76        49.28 
TCGA-50-5072 TCGA-50-5930 TCGA-50-5931 TCGA-50-5932 TCGA-50-5933 TCGA-50-5935 
        8.05         9.27         8.78        35.87        77.88        21.47 
TCGA-50-5936 TCGA-50-5939 TCGA-50-5941 TCGA-50-5942 TCGA-50-5944 TCGA-50-5946 
        8.45        15.12         9.37         4.44        12.26        11.47 
TCGA-50-6590 TCGA-50-6591 TCGA-50-6592 TCGA-50-6593 TCGA-50-6594 TCGA-50-6595 
       42.31         3.88        25.51        11.05        12.16         6.21 
TCGA-50-6597 TCGA-55-1594 TCGA-55-1595 TCGA-55-1596 TCGA-55-5899 TCGA-55-6543 
       33.37        38.73        48.62        45.17         2.86         0.07 
TCGA-55-6642 TCGA-55-6712 TCGA-64-1676 TCGA-64-1677 TCGA-64-1678 TCGA-64-1680 
       32.61         0.79        56.81        20.65        39.09        37.02 
TCGA-64-5774 TCGA-64-5775 TCGA-64-5778 TCGA-64-5779 TCGA-64-5781 TCGA-64-5815 
       83.84         0.10        30.44        16.67        39.52         7.33 
TCGA-67-3770 TCGA-67-3771 TCGA-67-3773 TCGA-67-3774 TCGA-67-6215 TCGA-67-6216 
        0.99         1.97         2.04         0.59         0.89         0.69 
TCGA-67-6217 TCGA-71-6725 TCGA-73-4658 TCGA-73-4659 TCGA-73-4662 TCGA-73-4666 
       13.87         2.01        52.57        23.38        29.95        20.28 
TCGA-73-4668 TCGA-73-4675 TCGA-73-4676 TCGA-73-4677 TCGA-91-6828 TCGA-91-6829 
       15.35         1.32         4.01         1.25         1.22        41.33 
TCGA-91-6831 TCGA-91-6835 TCGA-91-6836 
        1.28         1.15         0.36 

  THEMIS MUTATED THEMIS WILD-TYPE 
            0.46             0.07 
  THEMIS MUTATED THEMIS WILD-TYPE 
           46.72            85.32 
  THEMIS MUTATED THEMIS WILD-TYPE 
           7.465           14.070 
[1] "0.5 - 46.7 (7.5)"  "0.1 - 85.3 (14.1)"
      TCGA-05-4249       TCGA-05-4250       TCGA-05-4382       TCGA-05-4384 
"THEMIS WILD-TYPE" "THEMIS WILD-TYPE" "THEMIS WILD-TYPE" "THEMIS WILD-TYPE" 
      TCGA-05-4390       TCGA-05-4396       TCGA-05-4397       TCGA-05-4398 
"THEMIS WILD-TYPE"   "THEMIS MUTATED" "THEMIS WILD-TYPE" "THEMIS WILD-TYPE" 
      TCGA-05-4402       TCGA-05-4405       TCGA-05-4415       TCGA-05-4417 
"THEMIS WILD-TYPE" "THEMIS WILD-TYPE" "THEMIS WILD-TYPE" "THEMIS WILD-TYPE" 
      TCGA-05-4418       TCGA-05-4420       TCGA-05-4424       TCGA-05-4426 
  "THEMIS MUTATED" "THEMIS WILD-TYPE" "THEMIS WILD-TYPE" "THEMIS WILD-TYPE" 
      TCGA-05-4427       TCGA-05-4430       TCGA-05-4432       TCGA-05-4433 
"THEMIS WILD-TYPE" "THEMIS WILD-TYPE" "THEMIS WILD-TYPE" "THEMIS WILD-TYPE" 
      TCGA-05-4434       TCGA-05-5420       TCGA-05-5423       TCGA-05-5425 
"THEMIS WILD-TYPE" "THEMIS WILD-TYPE" "THEMIS WILD-TYPE" "THEMIS WILD-TYPE" 
      TCGA-05-5429       TCGA-05-5715       TCGA-35-3615       TCGA-35-4122 
"THEMIS WILD-TYPE" "THEMIS WILD-TYPE" "THEMIS WILD-TYPE" "THEMIS WILD-TYPE" 
      TCGA-35-4123       TCGA-35-5375       TCGA-38-4625       TCGA-38-4626 
  "THEMIS MUTATED" "THEMIS WILD-TYPE" "THEMIS WILD-TYPE" "THEMIS WILD-TYPE" 
      TCGA-38-4627       TCGA-38-4628       TCGA-38-4629       TCGA-38-4630 
"THEMIS WILD-TYPE" "THEMIS WILD-TYPE" "THEMIS WILD-TYPE" "THEMIS WILD-TYPE" 
      TCGA-38-4631       TCGA-38-4632       TCGA-38-6178       TCGA-44-2655 
"THEMIS WILD-TYPE" "THEMIS WILD-TYPE" "THEMIS WILD-TYPE" "THEMIS WILD-TYPE" 
      TCGA-44-2656       TCGA-44-2657       TCGA-44-2659       TCGA-44-2661 
"THEMIS WILD-TYPE" "THEMIS WILD-TYPE" "THEMIS WILD-TYPE" "THEMIS WILD-TYPE" 
      TCGA-44-2662       TCGA-44-2665       TCGA-44-2666       TCGA-44-2668 
"THEMIS WILD-TYPE" "THEMIS WILD-TYPE" "THEMIS WILD-TYPE" "THEMIS WILD-TYPE" 
      TCGA-44-3396       TCGA-44-3398       TCGA-44-3918       TCGA-44-3919 
"THEMIS WILD-TYPE" "THEMIS WILD-TYPE" "THEMIS WILD-TYPE" "THEMIS WILD-TYPE" 
      TCGA-44-4112       TCGA-44-5643       TCGA-44-5645       TCGA-44-6144 
  "THEMIS MUTATED" "THEMIS WILD-TYPE" "THEMIS WILD-TYPE" "THEMIS WILD-TYPE" 
      TCGA-44-6145       TCGA-44-6146       TCGA-44-6147       TCGA-44-6148 
"THEMIS WILD-TYPE" "THEMIS WILD-TYPE" "THEMIS WILD-TYPE" "THEMIS WILD-TYPE" 
      TCGA-44-6774       TCGA-44-6775       TCGA-44-6776       TCGA-44-6777 
"THEMIS WILD-TYPE" "THEMIS WILD-TYPE" "THEMIS WILD-TYPE" "THEMIS WILD-TYPE" 
      TCGA-44-6778       TCGA-44-6779       TCGA-49-4486       TCGA-49-4487 
"THEMIS WILD-TYPE" "THEMIS WILD-TYPE" "THEMIS WILD-TYPE" "THEMIS WILD-TYPE" 
      TCGA-49-4488       TCGA-49-4490       TCGA-49-4494       TCGA-49-4501 
"THEMIS WILD-TYPE" "THEMIS WILD-TYPE" "THEMIS WILD-TYPE"   "THEMIS MUTATED" 
      TCGA-49-4505       TCGA-49-4506       TCGA-49-4507       TCGA-49-4510 
"THEMIS WILD-TYPE" "THEMIS WILD-TYPE" "THEMIS WILD-TYPE" "THEMIS WILD-TYPE" 
      TCGA-49-4512       TCGA-49-4514       TCGA-49-6742       TCGA-49-6743 
"THEMIS WILD-TYPE" "THEMIS WILD-TYPE" "THEMIS WILD-TYPE" "THEMIS WILD-TYPE" 
      TCGA-49-6744       TCGA-49-6745       TCGA-50-5044       TCGA-50-5045 
"THEMIS WILD-TYPE" "THEMIS WILD-TYPE" "THEMIS WILD-TYPE" "THEMIS WILD-TYPE" 
      TCGA-50-5049       TCGA-50-5051       TCGA-50-5055       TCGA-50-5066 
"THEMIS WILD-TYPE" "THEMIS WILD-TYPE" "THEMIS WILD-TYPE" "THEMIS WILD-TYPE" 
      TCGA-50-5068       TCGA-50-5072       TCGA-50-5930       TCGA-50-5931 
"THEMIS WILD-TYPE" "THEMIS WILD-TYPE" "THEMIS WILD-TYPE" "THEMIS WILD-TYPE" 
      TCGA-50-5932       TCGA-50-5933       TCGA-50-5935       TCGA-50-5936 
"THEMIS WILD-TYPE" "THEMIS WILD-TYPE" "THEMIS WILD-TYPE" "THEMIS WILD-TYPE" 
      TCGA-50-5939       TCGA-50-5941       TCGA-50-5942       TCGA-50-5944 
"THEMIS WILD-TYPE" "THEMIS WILD-TYPE" "THEMIS WILD-TYPE" "THEMIS WILD-TYPE" 
      TCGA-50-5946       TCGA-50-6590       TCGA-50-6591       TCGA-50-6592 
"THEMIS WILD-TYPE" "THEMIS WILD-TYPE" "THEMIS WILD-TYPE" "THEMIS WILD-TYPE" 
      TCGA-50-6593       TCGA-50-6594       TCGA-50-6595       TCGA-50-6597 
"THEMIS WILD-TYPE" "THEMIS WILD-TYPE" "THEMIS WILD-TYPE" "THEMIS WILD-TYPE" 
      TCGA-55-1592       TCGA-55-1594       TCGA-55-1595       TCGA-55-1596 
  "THEMIS MUTATED" "THEMIS WILD-TYPE" "THEMIS WILD-TYPE" "THEMIS WILD-TYPE" 
      TCGA-55-5899       TCGA-55-6543       TCGA-55-6642       TCGA-55-6712 
"THEMIS WILD-TYPE" "THEMIS WILD-TYPE" "THEMIS WILD-TYPE" "THEMIS WILD-TYPE" 
      TCGA-64-1676       TCGA-64-1677       TCGA-64-1678       TCGA-64-1680 
"THEMIS WILD-TYPE" "THEMIS WILD-TYPE" "THEMIS WILD-TYPE" "THEMIS WILD-TYPE" 
      TCGA-64-5774       TCGA-64-5775       TCGA-64-5778       TCGA-64-5779 
"THEMIS WILD-TYPE" "THEMIS WILD-TYPE" "THEMIS WILD-TYPE" "THEMIS WILD-TYPE" 
      TCGA-64-5781       TCGA-64-5815       TCGA-67-3770       TCGA-67-3771 
"THEMIS WILD-TYPE" "THEMIS WILD-TYPE" "THEMIS WILD-TYPE" "THEMIS WILD-TYPE" 
      TCGA-67-3772       TCGA-67-3773       TCGA-67-3774       TCGA-67-6215 
  "THEMIS MUTATED" "THEMIS WILD-TYPE" "THEMIS WILD-TYPE" "THEMIS WILD-TYPE" 
      TCGA-67-6216       TCGA-67-6217       TCGA-71-6725       TCGA-73-4658 
"THEMIS WILD-TYPE" "THEMIS WILD-TYPE" "THEMIS WILD-TYPE" "THEMIS WILD-TYPE" 
      TCGA-73-4659       TCGA-73-4662       TCGA-73-4666       TCGA-73-4668 
"THEMIS WILD-TYPE" "THEMIS WILD-TYPE" "THEMIS WILD-TYPE" "THEMIS WILD-TYPE" 
      TCGA-73-4670       TCGA-73-4675       TCGA-73-4676       TCGA-73-4677 
  "THEMIS MUTATED" "THEMIS WILD-TYPE" "THEMIS WILD-TYPE" "THEMIS WILD-TYPE" 
      TCGA-91-6828       TCGA-91-6829       TCGA-91-6831       TCGA-91-6835 
"THEMIS WILD-TYPE" "THEMIS WILD-TYPE" "THEMIS WILD-TYPE" "THEMIS WILD-TYPE" 
      TCGA-91-6836 
"THEMIS WILD-TYPE" 
      TCGA-05-4249       TCGA-05-4250       TCGA-05-4382       TCGA-05-4384 
"THEMIS WILD-TYPE" "THEMIS WILD-TYPE" "THEMIS WILD-TYPE" "THEMIS WILD-TYPE" 
      TCGA-05-4390       TCGA-05-4396       TCGA-05-4397       TCGA-05-4398 
"THEMIS WILD-TYPE"   "THEMIS MUTATED" "THEMIS WILD-TYPE" "THEMIS WILD-TYPE" 
      TCGA-05-4402       TCGA-05-4405       TCGA-05-4415       TCGA-05-4417 
"THEMIS WILD-TYPE" "THEMIS WILD-TYPE" "THEMIS WILD-TYPE" "THEMIS WILD-TYPE" 
      TCGA-05-4418       TCGA-05-4420       TCGA-05-4424       TCGA-05-4426 
  "THEMIS MUTATED" "THEMIS WILD-TYPE" "THEMIS WILD-TYPE" "THEMIS WILD-TYPE" 
      TCGA-05-4427       TCGA-05-4430       TCGA-05-4432       TCGA-05-4433 
"THEMIS WILD-TYPE" "THEMIS WILD-TYPE" "THEMIS WILD-TYPE" "THEMIS WILD-TYPE" 
      TCGA-05-4434       TCGA-05-5420       TCGA-05-5423       TCGA-05-5425 
"THEMIS WILD-TYPE" "THEMIS WILD-TYPE" "THEMIS WILD-TYPE" "THEMIS WILD-TYPE" 
      TCGA-05-5429       TCGA-05-5715       TCGA-35-3615       TCGA-35-4122 
"THEMIS WILD-TYPE" "THEMIS WILD-TYPE" "THEMIS WILD-TYPE" "THEMIS WILD-TYPE" 
      TCGA-35-4123       TCGA-35-5375       TCGA-38-4625       TCGA-38-4626 
  "THEMIS MUTATED" "THEMIS WILD-TYPE" "THEMIS WILD-TYPE" "THEMIS WILD-TYPE" 
      TCGA-38-4627       TCGA-38-4628       TCGA-38-4629       TCGA-38-4630 
"THEMIS WILD-TYPE" "THEMIS WILD-TYPE" "THEMIS WILD-TYPE" "THEMIS WILD-TYPE" 
      TCGA-38-4631       TCGA-38-4632       TCGA-38-6178       TCGA-44-2655 
"THEMIS WILD-TYPE" "THEMIS WILD-TYPE" "THEMIS WILD-TYPE" "THEMIS WILD-TYPE" 
      TCGA-44-2656       TCGA-44-2657       TCGA-44-2659       TCGA-44-2661 
"THEMIS WILD-TYPE" "THEMIS WILD-TYPE" "THEMIS WILD-TYPE" "THEMIS WILD-TYPE" 
      TCGA-44-2662       TCGA-44-2665       TCGA-44-2666       TCGA-44-2668 
"THEMIS WILD-TYPE" "THEMIS WILD-TYPE" "THEMIS WILD-TYPE" "THEMIS WILD-TYPE" 
      TCGA-44-3396       TCGA-44-3398       TCGA-44-3918       TCGA-44-3919 
"THEMIS WILD-TYPE" "THEMIS WILD-TYPE" "THEMIS WILD-TYPE" "THEMIS WILD-TYPE" 
      TCGA-44-4112       TCGA-44-5643       TCGA-44-5645       TCGA-44-6144 
  "THEMIS MUTATED" "THEMIS WILD-TYPE" "THEMIS WILD-TYPE" "THEMIS WILD-TYPE" 
      TCGA-44-6145       TCGA-44-6146       TCGA-44-6147       TCGA-44-6148 
"THEMIS WILD-TYPE" "THEMIS WILD-TYPE" "THEMIS WILD-TYPE" "THEMIS WILD-TYPE" 
      TCGA-44-6774       TCGA-44-6775       TCGA-44-6776       TCGA-44-6777 
"THEMIS WILD-TYPE" "THEMIS WILD-TYPE" "THEMIS WILD-TYPE" "THEMIS WILD-TYPE" 
      TCGA-44-6778       TCGA-44-6779       TCGA-49-4486       TCGA-49-4487 
"THEMIS WILD-TYPE" "THEMIS WILD-TYPE" "THEMIS WILD-TYPE" "THEMIS WILD-TYPE" 
      TCGA-49-4488       TCGA-49-4490       TCGA-49-4494       TCGA-49-4501 
"THEMIS WILD-TYPE" "THEMIS WILD-TYPE" "THEMIS WILD-TYPE"   "THEMIS MUTATED" 
      TCGA-49-4505       TCGA-49-4506       TCGA-49-4507       TCGA-49-4510 
"THEMIS WILD-TYPE" "THEMIS WILD-TYPE" "THEMIS WILD-TYPE" "THEMIS WILD-TYPE" 
      TCGA-49-4512       TCGA-49-4514       TCGA-49-6742       TCGA-49-6743 
"THEMIS WILD-TYPE" "THEMIS WILD-TYPE" "THEMIS WILD-TYPE" "THEMIS WILD-TYPE" 
      TCGA-49-6744       TCGA-49-6745       TCGA-50-5044       TCGA-50-5045 
"THEMIS WILD-TYPE" "THEMIS WILD-TYPE" "THEMIS WILD-TYPE" "THEMIS WILD-TYPE" 
      TCGA-50-5049       TCGA-50-5051       TCGA-50-5055       TCGA-50-5066 
"THEMIS WILD-TYPE" "THEMIS WILD-TYPE" "THEMIS WILD-TYPE" "THEMIS WILD-TYPE" 
      TCGA-50-5068       TCGA-50-5072       TCGA-50-5930       TCGA-50-5931 
"THEMIS WILD-TYPE" "THEMIS WILD-TYPE" "THEMIS WILD-TYPE" "THEMIS WILD-TYPE" 
      TCGA-50-5932       TCGA-50-5933       TCGA-50-5935       TCGA-50-5936 
"THEMIS WILD-TYPE" "THEMIS WILD-TYPE" "THEMIS WILD-TYPE" "THEMIS WILD-TYPE" 
      TCGA-50-5939       TCGA-50-5941       TCGA-50-5942       TCGA-50-5944 
"THEMIS WILD-TYPE" "THEMIS WILD-TYPE" "THEMIS WILD-TYPE" "THEMIS WILD-TYPE" 
      TCGA-50-5946       TCGA-50-6590       TCGA-50-6591       TCGA-50-6592 
"THEMIS WILD-TYPE" "THEMIS WILD-TYPE" "THEMIS WILD-TYPE" "THEMIS WILD-TYPE" 
      TCGA-50-6593       TCGA-50-6594       TCGA-50-6595       TCGA-50-6597 
"THEMIS WILD-TYPE" "THEMIS WILD-TYPE" "THEMIS WILD-TYPE" "THEMIS WILD-TYPE" 
      TCGA-55-1592       TCGA-55-1594       TCGA-55-1595       TCGA-55-1596 
  "THEMIS MUTATED" "THEMIS WILD-TYPE" "THEMIS WILD-TYPE" "THEMIS WILD-TYPE" 
      TCGA-55-5899       TCGA-55-6543       TCGA-55-6642       TCGA-55-6712 
"THEMIS WILD-TYPE" "THEMIS WILD-TYPE" "THEMIS WILD-TYPE" "THEMIS WILD-TYPE" 
      TCGA-64-1676       TCGA-64-1677       TCGA-64-1678       TCGA-64-1680 
"THEMIS WILD-TYPE" "THEMIS WILD-TYPE" "THEMIS WILD-TYPE" "THEMIS WILD-TYPE" 
      TCGA-64-5774       TCGA-64-5775       TCGA-64-5778       TCGA-64-5779 
"THEMIS WILD-TYPE" "THEMIS WILD-TYPE" "THEMIS WILD-TYPE" "THEMIS WILD-TYPE" 
      TCGA-64-5781       TCGA-64-5815       TCGA-67-3770       TCGA-67-3771 
"THEMIS WILD-TYPE" "THEMIS WILD-TYPE" "THEMIS WILD-TYPE" "THEMIS WILD-TYPE" 
      TCGA-67-3772       TCGA-67-3773       TCGA-67-3774       TCGA-67-6215 
  "THEMIS MUTATED" "THEMIS WILD-TYPE" "THEMIS WILD-TYPE" "THEMIS WILD-TYPE" 
      TCGA-67-6216       TCGA-67-6217       TCGA-71-6725       TCGA-73-4658 
"THEMIS WILD-TYPE" "THEMIS WILD-TYPE" "THEMIS WILD-TYPE" "THEMIS WILD-TYPE" 
      TCGA-73-4659       TCGA-73-4662       TCGA-73-4666       TCGA-73-4668 
"THEMIS WILD-TYPE" "THEMIS WILD-TYPE" "THEMIS WILD-TYPE" "THEMIS WILD-TYPE" 
      TCGA-73-4670       TCGA-73-4675       TCGA-73-4676       TCGA-73-4677 
  "THEMIS MUTATED" "THEMIS WILD-TYPE" "THEMIS WILD-TYPE" "THEMIS WILD-TYPE" 
      TCGA-91-6828       TCGA-91-6829       TCGA-91-6831       TCGA-91-6835 
"THEMIS WILD-TYPE" "THEMIS WILD-TYPE" "THEMIS WILD-TYPE" "THEMIS WILD-TYPE" 
      TCGA-91-6836 
"THEMIS WILD-TYPE" 
      TCGA-05-4249       TCGA-05-4250       TCGA-05-4382       TCGA-05-4384 
"THEMIS WILD-TYPE" "THEMIS WILD-TYPE" "THEMIS WILD-TYPE" "THEMIS WILD-TYPE" 
      TCGA-05-4390       TCGA-05-4396       TCGA-05-4397       TCGA-05-4398 
"THEMIS WILD-TYPE"   "THEMIS MUTATED" "THEMIS WILD-TYPE" "THEMIS WILD-TYPE" 
      TCGA-05-4402       TCGA-05-4405       TCGA-05-4415       TCGA-05-4417 
"THEMIS WILD-TYPE" "THEMIS WILD-TYPE" "THEMIS WILD-TYPE" "THEMIS WILD-TYPE" 
      TCGA-05-4418       TCGA-05-4420       TCGA-05-4424       TCGA-05-4426 
  "THEMIS MUTATED" "THEMIS WILD-TYPE" "THEMIS WILD-TYPE" "THEMIS WILD-TYPE" 
      TCGA-05-4427       TCGA-05-4430       TCGA-05-4432       TCGA-05-4433 
"THEMIS WILD-TYPE" "THEMIS WILD-TYPE" "THEMIS WILD-TYPE" "THEMIS WILD-TYPE" 
      TCGA-05-4434       TCGA-05-5420       TCGA-05-5423       TCGA-05-5425 
"THEMIS WILD-TYPE" "THEMIS WILD-TYPE" "THEMIS WILD-TYPE" "THEMIS WILD-TYPE" 
      TCGA-05-5429       TCGA-05-5715       TCGA-35-3615       TCGA-35-4122 
"THEMIS WILD-TYPE" "THEMIS WILD-TYPE" "THEMIS WILD-TYPE" "THEMIS WILD-TYPE" 
      TCGA-35-4123       TCGA-35-5375       TCGA-38-4625       TCGA-38-4626 
  "THEMIS MUTATED" "THEMIS WILD-TYPE" "THEMIS WILD-TYPE" "THEMIS WILD-TYPE" 
      TCGA-38-4627       TCGA-38-4628       TCGA-38-4629       TCGA-38-4630 
"THEMIS WILD-TYPE" "THEMIS WILD-TYPE" "THEMIS WILD-TYPE" "THEMIS WILD-TYPE" 
      TCGA-38-4631       TCGA-38-4632       TCGA-38-6178       TCGA-44-2655 
"THEMIS WILD-TYPE" "THEMIS WILD-TYPE" "THEMIS WILD-TYPE" "THEMIS WILD-TYPE" 
      TCGA-44-2656       TCGA-44-2657       TCGA-44-2659       TCGA-44-2661 
"THEMIS WILD-TYPE" "THEMIS WILD-TYPE" "THEMIS WILD-TYPE" "THEMIS WILD-TYPE" 
      TCGA-44-2662       TCGA-44-2665       TCGA-44-2666       TCGA-44-2668 
"THEMIS WILD-TYPE" "THEMIS WILD-TYPE" "THEMIS WILD-TYPE" "THEMIS WILD-TYPE" 
      TCGA-44-3396       TCGA-44-3398       TCGA-44-3918       TCGA-44-3919 
"THEMIS WILD-TYPE" "THEMIS WILD-TYPE" "THEMIS WILD-TYPE" "THEMIS WILD-TYPE" 
      TCGA-44-4112       TCGA-44-5643       TCGA-44-5645       TCGA-44-6144 
  "THEMIS MUTATED" "THEMIS WILD-TYPE" "THEMIS WILD-TYPE" "THEMIS WILD-TYPE" 
      TCGA-44-6145       TCGA-44-6146       TCGA-44-6147       TCGA-44-6148 
"THEMIS WILD-TYPE" "THEMIS WILD-TYPE" "THEMIS WILD-TYPE" "THEMIS WILD-TYPE" 
      TCGA-44-6774       TCGA-44-6775       TCGA-44-6776       TCGA-44-6777 
"THEMIS WILD-TYPE" "THEMIS WILD-TYPE" "THEMIS WILD-TYPE" "THEMIS WILD-TYPE" 
      TCGA-44-6778       TCGA-44-6779       TCGA-49-4486       TCGA-49-4487 
"THEMIS WILD-TYPE" "THEMIS WILD-TYPE" "THEMIS WILD-TYPE" "THEMIS WILD-TYPE" 
      TCGA-49-4488       TCGA-49-4490       TCGA-49-4494       TCGA-49-4501 
"THEMIS WILD-TYPE" "THEMIS WILD-TYPE" "THEMIS WILD-TYPE"   "THEMIS MUTATED" 
      TCGA-49-4505       TCGA-49-4506       TCGA-49-4507       TCGA-49-4510 
"THEMIS WILD-TYPE" "THEMIS WILD-TYPE" "THEMIS WILD-TYPE" "THEMIS WILD-TYPE" 
      TCGA-49-4512       TCGA-49-4514       TCGA-49-6742       TCGA-49-6743 
"THEMIS WILD-TYPE" "THEMIS WILD-TYPE" "THEMIS WILD-TYPE" "THEMIS WILD-TYPE" 
      TCGA-49-6744       TCGA-49-6745       TCGA-50-5044       TCGA-50-5045 
"THEMIS WILD-TYPE" "THEMIS WILD-TYPE" "THEMIS WILD-TYPE" "THEMIS WILD-TYPE" 
      TCGA-50-5049       TCGA-50-5051       TCGA-50-5055       TCGA-50-5066 
"THEMIS WILD-TYPE" "THEMIS WILD-TYPE" "THEMIS WILD-TYPE" "THEMIS WILD-TYPE" 
      TCGA-50-5068       TCGA-50-5072       TCGA-50-5930       TCGA-50-5931 
"THEMIS WILD-TYPE" "THEMIS WILD-TYPE" "THEMIS WILD-TYPE" "THEMIS WILD-TYPE" 
      TCGA-50-5932       TCGA-50-5933       TCGA-50-5935       TCGA-50-5936 
"THEMIS WILD-TYPE" "THEMIS WILD-TYPE" "THEMIS WILD-TYPE" "THEMIS WILD-TYPE" 
      TCGA-50-5939       TCGA-50-5941       TCGA-50-5942       TCGA-50-5944 
"THEMIS WILD-TYPE" "THEMIS WILD-TYPE" "THEMIS WILD-TYPE" "THEMIS WILD-TYPE" 
      TCGA-50-5946       TCGA-50-6590       TCGA-50-6591       TCGA-50-6592 
"THEMIS WILD-TYPE" "THEMIS WILD-TYPE" "THEMIS WILD-TYPE" "THEMIS WILD-TYPE" 
      TCGA-50-6593       TCGA-50-6594       TCGA-50-6595       TCGA-50-6597 
"THEMIS WILD-TYPE" "THEMIS WILD-TYPE" "THEMIS WILD-TYPE" "THEMIS WILD-TYPE" 
      TCGA-55-1592       TCGA-55-1594       TCGA-55-1595       TCGA-55-1596 
  "THEMIS MUTATED" "THEMIS WILD-TYPE" "THEMIS WILD-TYPE" "THEMIS WILD-TYPE" 
      TCGA-55-5899       TCGA-55-6543       TCGA-55-6642       TCGA-55-6712 
"THEMIS WILD-TYPE" "THEMIS WILD-TYPE" "THEMIS WILD-TYPE" "THEMIS WILD-TYPE" 
      TCGA-64-1676       TCGA-64-1677       TCGA-64-1678       TCGA-64-1680 
"THEMIS WILD-TYPE" "THEMIS WILD-TYPE" "THEMIS WILD-TYPE" "THEMIS WILD-TYPE" 
      TCGA-64-5774       TCGA-64-5775       TCGA-64-5778       TCGA-64-5779 
"THEMIS WILD-TYPE" "THEMIS WILD-TYPE" "THEMIS WILD-TYPE" "THEMIS WILD-TYPE" 
      TCGA-64-5781       TCGA-64-5815       TCGA-67-3770       TCGA-67-3771 
"THEMIS WILD-TYPE" "THEMIS WILD-TYPE" "THEMIS WILD-TYPE" "THEMIS WILD-TYPE" 
      TCGA-67-3772       TCGA-67-3773       TCGA-67-3774       TCGA-67-6215 
  "THEMIS MUTATED" "THEMIS WILD-TYPE" "THEMIS WILD-TYPE" "THEMIS WILD-TYPE" 
      TCGA-67-6216       TCGA-67-6217       TCGA-71-6725       TCGA-73-4658 
"THEMIS WILD-TYPE" "THEMIS WILD-TYPE" "THEMIS WILD-TYPE" "THEMIS WILD-TYPE" 
      TCGA-73-4659       TCGA-73-4662       TCGA-73-4666       TCGA-73-4668 
"THEMIS WILD-TYPE" "THEMIS WILD-TYPE" "THEMIS WILD-TYPE" "THEMIS WILD-TYPE" 
      TCGA-73-4670       TCGA-73-4675       TCGA-73-4676       TCGA-73-4677 
  "THEMIS MUTATED" "THEMIS WILD-TYPE" "THEMIS WILD-TYPE" "THEMIS WILD-TYPE" 
      TCGA-91-6828       TCGA-91-6829       TCGA-91-6831       TCGA-91-6835 
"THEMIS WILD-TYPE" "THEMIS WILD-TYPE" "THEMIS WILD-TYPE" "THEMIS WILD-TYPE" 
      TCGA-91-6836 
"THEMIS WILD-TYPE" 
[1] "hr=" "2.7"
D48V2, continuous
D48V3, binary
[1] "tbl2"
                  cls
clus               [,1] [,2]
  THEMIS MUTATED      4    6
  THEMIS WILD-TYPE   89   73
        clus
vv       THEMIS MUTATED THEMIS WILD-TYPE
  FEMALE              4               89
  MALE                6               73
D48V4, continuous
[1] "Remove cluster labels:" "THEMIS MUTATED"        
clus
  THEMIS MUTATED THEMIS WILD-TYPE 
               1               11 
      TCGA-35-4122       TCGA-35-5375       TCGA-64-1677       TCGA-64-5778 
"THEMIS WILD-TYPE" "THEMIS WILD-TYPE" "THEMIS WILD-TYPE" "THEMIS WILD-TYPE" 
      TCGA-71-6725       TCGA-73-4659       TCGA-73-4662       TCGA-73-4666 
"THEMIS WILD-TYPE" "THEMIS WILD-TYPE" "THEMIS WILD-TYPE" "THEMIS WILD-TYPE" 
      TCGA-73-4668       TCGA-73-4676       TCGA-75-5122 
"THEMIS WILD-TYPE" "THEMIS WILD-TYPE" "THEMIS WILD-TYPE" 
D48V5, multiclass
D48V6, multiclass
    clus
vv   THEMIS MUTATED THEMIS WILD-TYPE
  T1              1               40
  T2              7              101
  T3              1               13
  T4              1                7
D48V7, multiclass
       clus
vv      THEMIS MUTATED THEMIS WILD-TYPE
  N0                 8               87
  N1                 1               36
  N2+N3              1               34
D48V8, multiclass
    clus
vv   THEMIS MUTATED THEMIS WILD-TYPE
  M0              9              128
  M1              1                8
  MX              0               22
D48V9, multiclass
     clus
vv    THEMIS MUTATED THEMIS WILD-TYPE
  I                7               81
  II               0               33
  III              2               37
  IV               1                8
D48V10, binary
[1] "tbl2"
                  cls
clus               [,1] [,2]
  THEMIS MUTATED      0   10
  THEMIS WILD-TYPE   16  146
     clus
vv    THEMIS MUTATED THEMIS WILD-TYPE
  NO               0               16
  YES             10              146
D48V11, continuous
D48V12, continuous
D48V13, multiclass
                                             clus
vv                                            THEMIS MUTATED THEMIS WILD-TYPE
  CURRENT REFORMED SMOKER FOR < OR = 15 YEARS              4               58
  CURRENT REFORMED SMOKER FOR > 15 YEARS                   3               43
  CURRENT SMOKER                                           1               27
  LIFELONG NON-SMOKER                                      2               22
D48V14, continuous

Clustering(49) Variable = FAM71B MUTATION ANALYSIS
D49V1, survival
                  sevent
clus2               0  1
  FAM71B MUTATED    9  5
  FAM71B WILD-TYPE 90 45
  FAM71B MUTATED FAM71B WILD-TYPE 
              14              135 
  FAM71B MUTATED FAM71B WILD-TYPE 
               5               45 
$`FAM71B MUTATED`
TCGA-05-4390 TCGA-05-4396 TCGA-35-3615 TCGA-38-4625 TCGA-44-6776 TCGA-49-4501 
       37.02         9.96         0.46        47.61        63.72        46.72 
TCGA-49-4510 TCGA-49-4514 TCGA-49-6745 TCGA-50-6593 TCGA-55-1595 TCGA-64-5775 
       29.46        43.20         4.93        11.05        48.62         0.10 
TCGA-64-5815 TCGA-91-6836 
        7.33         0.36 

$`FAM71B WILD-TYPE`
TCGA-05-4249 TCGA-05-4250 TCGA-05-4382 TCGA-05-4384 TCGA-05-4397 TCGA-05-4398 
       38.07         3.98        19.92        14.01        24.03        47.05 
TCGA-05-4402 TCGA-05-4405 TCGA-05-4415 TCGA-05-4417 TCGA-05-4418 TCGA-05-4420 
        8.02        20.05         2.96        14.93         8.98        29.95 
TCGA-05-4424 TCGA-05-4426 TCGA-05-4427 TCGA-05-4430 TCGA-05-4432 TCGA-05-4433 
       30.02        26.01        26.01        25.02        25.02        24.00 
TCGA-05-4434 TCGA-05-5420 TCGA-05-5423 TCGA-05-5425 TCGA-05-5429 TCGA-05-5715 
       15.02         1.02         4.96         2.96         0.99         2.04 
TCGA-35-4122 TCGA-35-4123 TCGA-35-5375 TCGA-38-4626 TCGA-38-4627 TCGA-38-4628 
        7.36         5.95         8.68        85.32        37.71        49.02 
TCGA-38-4629 TCGA-38-4630 TCGA-38-4631 TCGA-38-4632 TCGA-38-6178 TCGA-44-2655 
       28.37        35.28        11.64        44.61         5.19        18.87 
TCGA-44-2656 TCGA-44-2657 TCGA-44-2659 TCGA-44-2661 TCGA-44-2662 TCGA-44-2665 
       19.10        13.15        17.39         3.39        15.78        13.15 
TCGA-44-2666 TCGA-44-2668 TCGA-44-3396 TCGA-44-3398 TCGA-44-3918 TCGA-44-3919 
        3.19         8.09        10.22         8.32         6.44         6.21 
TCGA-44-4112 TCGA-44-5643 TCGA-44-5645 TCGA-44-6144 TCGA-44-6145 TCGA-44-6146 
        4.60         3.48         6.84         0.30         3.35         9.93 
TCGA-44-6147 TCGA-44-6148 TCGA-44-6774 TCGA-44-6775 TCGA-44-6777 TCGA-44-6778 
        7.76         3.12         5.42         2.70        32.45        36.49 
TCGA-44-6779 TCGA-49-4486 TCGA-49-4487 TCGA-49-4488 TCGA-49-4490 TCGA-49-4494 
       16.41        76.21        28.11        28.57        12.66        35.54 
TCGA-49-4505 TCGA-49-4506 TCGA-49-4507 TCGA-49-4512 TCGA-49-6742 TCGA-49-6743 
       14.07        32.84         8.81        29.75        15.02        12.13 
TCGA-49-6744 TCGA-50-5044 TCGA-50-5045 TCGA-50-5049 TCGA-50-5051 TCGA-50-5055 
       12.99        20.48        71.47        48.82        14.96        25.81 
TCGA-50-5066 TCGA-50-5068 TCGA-50-5072 TCGA-50-5930 TCGA-50-5931 TCGA-50-5932 
        9.76        49.28         8.05         9.27         8.78        35.87 
TCGA-50-5933 TCGA-50-5935 TCGA-50-5936 TCGA-50-5939 TCGA-50-5941 TCGA-50-5942 
       77.88        21.47         8.45        15.12         9.37         4.44 
TCGA-50-5944 TCGA-50-5946 TCGA-50-6590 TCGA-50-6591 TCGA-50-6592 TCGA-50-6594 
       12.26        11.47        42.31         3.88        25.51        12.16 
TCGA-50-6595 TCGA-50-6597 TCGA-55-1592 TCGA-55-1594 TCGA-55-1596 TCGA-55-5899 
        6.21        33.37        23.05        38.73        45.17         2.86 
TCGA-55-6543 TCGA-55-6642 TCGA-55-6712 TCGA-64-1676 TCGA-64-1677 TCGA-64-1678 
        0.07        32.61         0.79        56.81        20.65        39.09 
TCGA-64-1680 TCGA-64-5774 TCGA-64-5778 TCGA-64-5779 TCGA-64-5781 TCGA-67-3770 
       37.02        83.84        30.44        16.67        39.52         0.99 
TCGA-67-3771 TCGA-67-3772 TCGA-67-3773 TCGA-67-3774 TCGA-67-6215 TCGA-67-6216 
        1.97         0.59         2.04         0.59         0.89         0.69 
TCGA-67-6217 TCGA-71-6725 TCGA-73-4658 TCGA-73-4659 TCGA-73-4662 TCGA-73-4666 
       13.87         2.01        52.57        23.38        29.95        20.28 
TCGA-73-4668 TCGA-73-4670 TCGA-73-4675 TCGA-73-4676 TCGA-73-4677 TCGA-91-6828 
       15.35         0.46         1.32         4.01         1.25         1.22 
TCGA-91-6829 TCGA-91-6831 TCGA-91-6835 
       41.33         1.28         1.15 

  FAM71B MUTATED FAM71B WILD-TYPE 
            0.10             0.07 
  FAM71B MUTATED FAM71B WILD-TYPE 
           63.72            85.32 
  FAM71B MUTATED FAM71B WILD-TYPE 
          20.255           13.870 
[1] "0.1 - 63.7 (20.3)" "0.1 - 85.3 (13.9)"
      TCGA-05-4249       TCGA-05-4250       TCGA-05-4382       TCGA-05-4384 
"FAM71B WILD-TYPE" "FAM71B WILD-TYPE" "FAM71B WILD-TYPE" "FAM71B WILD-TYPE" 
      TCGA-05-4390       TCGA-05-4396       TCGA-05-4397       TCGA-05-4398 
  "FAM71B MUTATED"   "FAM71B MUTATED" "FAM71B WILD-TYPE" "FAM71B WILD-TYPE" 
      TCGA-05-4402       TCGA-05-4405       TCGA-05-4415       TCGA-05-4417 
"FAM71B WILD-TYPE" "FAM71B WILD-TYPE" "FAM71B WILD-TYPE" "FAM71B WILD-TYPE" 
      TCGA-05-4418       TCGA-05-4420       TCGA-05-4424       TCGA-05-4426 
"FAM71B WILD-TYPE" "FAM71B WILD-TYPE" "FAM71B WILD-TYPE" "FAM71B WILD-TYPE" 
      TCGA-05-4427       TCGA-05-4430       TCGA-05-4432       TCGA-05-4433 
"FAM71B WILD-TYPE" "FAM71B WILD-TYPE" "FAM71B WILD-TYPE" "FAM71B WILD-TYPE" 
      TCGA-05-4434       TCGA-05-5420       TCGA-05-5423       TCGA-05-5425 
"FAM71B WILD-TYPE" "FAM71B WILD-TYPE" "FAM71B WILD-TYPE" "FAM71B WILD-TYPE" 
      TCGA-05-5429       TCGA-05-5715       TCGA-35-3615       TCGA-35-4122 
"FAM71B WILD-TYPE" "FAM71B WILD-TYPE"   "FAM71B MUTATED" "FAM71B WILD-TYPE" 
      TCGA-35-4123       TCGA-35-5375       TCGA-38-4625       TCGA-38-4626 
"FAM71B WILD-TYPE" "FAM71B WILD-TYPE"   "FAM71B MUTATED" "FAM71B WILD-TYPE" 
      TCGA-38-4627       TCGA-38-4628       TCGA-38-4629       TCGA-38-4630 
"FAM71B WILD-TYPE" "FAM71B WILD-TYPE" "FAM71B WILD-TYPE" "FAM71B WILD-TYPE" 
      TCGA-38-4631       TCGA-38-4632       TCGA-38-6178       TCGA-44-2655 
"FAM71B WILD-TYPE" "FAM71B WILD-TYPE" "FAM71B WILD-TYPE" "FAM71B WILD-TYPE" 
      TCGA-44-2656       TCGA-44-2657       TCGA-44-2659       TCGA-44-2661 
"FAM71B WILD-TYPE" "FAM71B WILD-TYPE" "FAM71B WILD-TYPE" "FAM71B WILD-TYPE" 
      TCGA-44-2662       TCGA-44-2665       TCGA-44-2666       TCGA-44-2668 
"FAM71B WILD-TYPE" "FAM71B WILD-TYPE" "FAM71B WILD-TYPE" "FAM71B WILD-TYPE" 
      TCGA-44-3396       TCGA-44-3398       TCGA-44-3918       TCGA-44-3919 
"FAM71B WILD-TYPE" "FAM71B WILD-TYPE" "FAM71B WILD-TYPE" "FAM71B WILD-TYPE" 
      TCGA-44-4112       TCGA-44-5643       TCGA-44-5645       TCGA-44-6144 
"FAM71B WILD-TYPE" "FAM71B WILD-TYPE" "FAM71B WILD-TYPE" "FAM71B WILD-TYPE" 
      TCGA-44-6145       TCGA-44-6146       TCGA-44-6147       TCGA-44-6148 
"FAM71B WILD-TYPE" "FAM71B WILD-TYPE" "FAM71B WILD-TYPE" "FAM71B WILD-TYPE" 
      TCGA-44-6774       TCGA-44-6775       TCGA-44-6776       TCGA-44-6777 
"FAM71B WILD-TYPE" "FAM71B WILD-TYPE"   "FAM71B MUTATED" "FAM71B WILD-TYPE" 
      TCGA-44-6778       TCGA-44-6779       TCGA-49-4486       TCGA-49-4487 
"FAM71B WILD-TYPE" "FAM71B WILD-TYPE" "FAM71B WILD-TYPE" "FAM71B WILD-TYPE" 
      TCGA-49-4488       TCGA-49-4490       TCGA-49-4494       TCGA-49-4501 
"FAM71B WILD-TYPE" "FAM71B WILD-TYPE" "FAM71B WILD-TYPE"   "FAM71B MUTATED" 
      TCGA-49-4505       TCGA-49-4506       TCGA-49-4507       TCGA-49-4510 
"FAM71B WILD-TYPE" "FAM71B WILD-TYPE" "FAM71B WILD-TYPE"   "FAM71B MUTATED" 
      TCGA-49-4512       TCGA-49-4514       TCGA-49-6742       TCGA-49-6743 
"FAM71B WILD-TYPE"   "FAM71B MUTATED" "FAM71B WILD-TYPE" "FAM71B WILD-TYPE" 
      TCGA-49-6744       TCGA-49-6745       TCGA-50-5044       TCGA-50-5045 
"FAM71B WILD-TYPE"   "FAM71B MUTATED" "FAM71B WILD-TYPE" "FAM71B WILD-TYPE" 
      TCGA-50-5049       TCGA-50-5051       TCGA-50-5055       TCGA-50-5066 
"FAM71B WILD-TYPE" "FAM71B WILD-TYPE" "FAM71B WILD-TYPE" "FAM71B WILD-TYPE" 
      TCGA-50-5068       TCGA-50-5072       TCGA-50-5930       TCGA-50-5931 
"FAM71B WILD-TYPE" "FAM71B WILD-TYPE" "FAM71B WILD-TYPE" "FAM71B WILD-TYPE" 
      TCGA-50-5932       TCGA-50-5933       TCGA-50-5935       TCGA-50-5936 
"FAM71B WILD-TYPE" "FAM71B WILD-TYPE" "FAM71B WILD-TYPE" "FAM71B WILD-TYPE" 
      TCGA-50-5939       TCGA-50-5941       TCGA-50-5942       TCGA-50-5944 
"FAM71B WILD-TYPE" "FAM71B WILD-TYPE" "FAM71B WILD-TYPE" "FAM71B WILD-TYPE" 
      TCGA-50-5946       TCGA-50-6590       TCGA-50-6591       TCGA-50-6592 
"FAM71B WILD-TYPE" "FAM71B WILD-TYPE" "FAM71B WILD-TYPE" "FAM71B WILD-TYPE" 
      TCGA-50-6593       TCGA-50-6594       TCGA-50-6595       TCGA-50-6597 
  "FAM71B MUTATED" "FAM71B WILD-TYPE" "FAM71B WILD-TYPE" "FAM71B WILD-TYPE" 
      TCGA-55-1592       TCGA-55-1594       TCGA-55-1595       TCGA-55-1596 
"FAM71B WILD-TYPE" "FAM71B WILD-TYPE"   "FAM71B MUTATED" "FAM71B WILD-TYPE" 
      TCGA-55-5899       TCGA-55-6543       TCGA-55-6642       TCGA-55-6712 
"FAM71B WILD-TYPE" "FAM71B WILD-TYPE" "FAM71B WILD-TYPE" "FAM71B WILD-TYPE" 
      TCGA-64-1676       TCGA-64-1677       TCGA-64-1678       TCGA-64-1680 
"FAM71B WILD-TYPE" "FAM71B WILD-TYPE" "FAM71B WILD-TYPE" "FAM71B WILD-TYPE" 
      TCGA-64-5774       TCGA-64-5775       TCGA-64-5778       TCGA-64-5779 
"FAM71B WILD-TYPE"   "FAM71B MUTATED" "FAM71B WILD-TYPE" "FAM71B WILD-TYPE" 
      TCGA-64-5781       TCGA-64-5815       TCGA-67-3770       TCGA-67-3771 
"FAM71B WILD-TYPE"   "FAM71B MUTATED" "FAM71B WILD-TYPE" "FAM71B WILD-TYPE" 
      TCGA-67-3772       TCGA-67-3773       TCGA-67-3774       TCGA-67-6215 
"FAM71B WILD-TYPE" "FAM71B WILD-TYPE" "FAM71B WILD-TYPE" "FAM71B WILD-TYPE" 
      TCGA-67-6216       TCGA-67-6217       TCGA-71-6725       TCGA-73-4658 
"FAM71B WILD-TYPE" "FAM71B WILD-TYPE" "FAM71B WILD-TYPE" "FAM71B WILD-TYPE" 
      TCGA-73-4659       TCGA-73-4662       TCGA-73-4666       TCGA-73-4668 
"FAM71B WILD-TYPE" "FAM71B WILD-TYPE" "FAM71B WILD-TYPE" "FAM71B WILD-TYPE" 
      TCGA-73-4670       TCGA-73-4675       TCGA-73-4676       TCGA-73-4677 
"FAM71B WILD-TYPE" "FAM71B WILD-TYPE" "FAM71B WILD-TYPE" "FAM71B WILD-TYPE" 
      TCGA-91-6828       TCGA-91-6829       TCGA-91-6831       TCGA-91-6835 
"FAM71B WILD-TYPE" "FAM71B WILD-TYPE" "FAM71B WILD-TYPE" "FAM71B WILD-TYPE" 
      TCGA-91-6836 
  "FAM71B MUTATED" 
      TCGA-05-4249       TCGA-05-4250       TCGA-05-4382       TCGA-05-4384 
"FAM71B WILD-TYPE" "FAM71B WILD-TYPE" "FAM71B WILD-TYPE" "FAM71B WILD-TYPE" 
      TCGA-05-4390       TCGA-05-4396       TCGA-05-4397       TCGA-05-4398 
  "FAM71B MUTATED"   "FAM71B MUTATED" "FAM71B WILD-TYPE" "FAM71B WILD-TYPE" 
      TCGA-05-4402       TCGA-05-4405       TCGA-05-4415       TCGA-05-4417 
"FAM71B WILD-TYPE" "FAM71B WILD-TYPE" "FAM71B WILD-TYPE" "FAM71B WILD-TYPE" 
      TCGA-05-4418       TCGA-05-4420       TCGA-05-4424       TCGA-05-4426 
"FAM71B WILD-TYPE" "FAM71B WILD-TYPE" "FAM71B WILD-TYPE" "FAM71B WILD-TYPE" 
      TCGA-05-4427       TCGA-05-4430       TCGA-05-4432       TCGA-05-4433 
"FAM71B WILD-TYPE" "FAM71B WILD-TYPE" "FAM71B WILD-TYPE" "FAM71B WILD-TYPE" 
      TCGA-05-4434       TCGA-05-5420       TCGA-05-5423       TCGA-05-5425 
"FAM71B WILD-TYPE" "FAM71B WILD-TYPE" "FAM71B WILD-TYPE" "FAM71B WILD-TYPE" 
      TCGA-05-5429       TCGA-05-5715       TCGA-35-3615       TCGA-35-4122 
"FAM71B WILD-TYPE" "FAM71B WILD-TYPE"   "FAM71B MUTATED" "FAM71B WILD-TYPE" 
      TCGA-35-4123       TCGA-35-5375       TCGA-38-4625       TCGA-38-4626 
"FAM71B WILD-TYPE" "FAM71B WILD-TYPE"   "FAM71B MUTATED" "FAM71B WILD-TYPE" 
      TCGA-38-4627       TCGA-38-4628       TCGA-38-4629       TCGA-38-4630 
"FAM71B WILD-TYPE" "FAM71B WILD-TYPE" "FAM71B WILD-TYPE" "FAM71B WILD-TYPE" 
      TCGA-38-4631       TCGA-38-4632       TCGA-38-6178       TCGA-44-2655 
"FAM71B WILD-TYPE" "FAM71B WILD-TYPE" "FAM71B WILD-TYPE" "FAM71B WILD-TYPE" 
      TCGA-44-2656       TCGA-44-2657       TCGA-44-2659       TCGA-44-2661 
"FAM71B WILD-TYPE" "FAM71B WILD-TYPE" "FAM71B WILD-TYPE" "FAM71B WILD-TYPE" 
      TCGA-44-2662       TCGA-44-2665       TCGA-44-2666       TCGA-44-2668 
"FAM71B WILD-TYPE" "FAM71B WILD-TYPE" "FAM71B WILD-TYPE" "FAM71B WILD-TYPE" 
      TCGA-44-3396       TCGA-44-3398       TCGA-44-3918       TCGA-44-3919 
"FAM71B WILD-TYPE" "FAM71B WILD-TYPE" "FAM71B WILD-TYPE" "FAM71B WILD-TYPE" 
      TCGA-44-4112       TCGA-44-5643       TCGA-44-5645       TCGA-44-6144 
"FAM71B WILD-TYPE" "FAM71B WILD-TYPE" "FAM71B WILD-TYPE" "FAM71B WILD-TYPE" 
      TCGA-44-6145       TCGA-44-6146       TCGA-44-6147       TCGA-44-6148 
"FAM71B WILD-TYPE" "FAM71B WILD-TYPE" "FAM71B WILD-TYPE" "FAM71B WILD-TYPE" 
      TCGA-44-6774       TCGA-44-6775       TCGA-44-6776       TCGA-44-6777 
"FAM71B WILD-TYPE" "FAM71B WILD-TYPE"   "FAM71B MUTATED" "FAM71B WILD-TYPE" 
      TCGA-44-6778       TCGA-44-6779       TCGA-49-4486       TCGA-49-4487 
"FAM71B WILD-TYPE" "FAM71B WILD-TYPE" "FAM71B WILD-TYPE" "FAM71B WILD-TYPE" 
      TCGA-49-4488       TCGA-49-4490       TCGA-49-4494       TCGA-49-4501 
"FAM71B WILD-TYPE" "FAM71B WILD-TYPE" "FAM71B WILD-TYPE"   "FAM71B MUTATED" 
      TCGA-49-4505       TCGA-49-4506       TCGA-49-4507       TCGA-49-4510 
"FAM71B WILD-TYPE" "FAM71B WILD-TYPE" "FAM71B WILD-TYPE"   "FAM71B MUTATED" 
      TCGA-49-4512       TCGA-49-4514       TCGA-49-6742       TCGA-49-6743 
"FAM71B WILD-TYPE"   "FAM71B MUTATED" "FAM71B WILD-TYPE" "FAM71B WILD-TYPE" 
      TCGA-49-6744       TCGA-49-6745       TCGA-50-5044       TCGA-50-5045 
"FAM71B WILD-TYPE"   "FAM71B MUTATED" "FAM71B WILD-TYPE" "FAM71B WILD-TYPE" 
      TCGA-50-5049       TCGA-50-5051       TCGA-50-5055       TCGA-50-5066 
"FAM71B WILD-TYPE" "FAM71B WILD-TYPE" "FAM71B WILD-TYPE" "FAM71B WILD-TYPE" 
      TCGA-50-5068       TCGA-50-5072       TCGA-50-5930       TCGA-50-5931 
"FAM71B WILD-TYPE" "FAM71B WILD-TYPE" "FAM71B WILD-TYPE" "FAM71B WILD-TYPE" 
      TCGA-50-5932       TCGA-50-5933       TCGA-50-5935       TCGA-50-5936 
"FAM71B WILD-TYPE" "FAM71B WILD-TYPE" "FAM71B WILD-TYPE" "FAM71B WILD-TYPE" 
      TCGA-50-5939       TCGA-50-5941       TCGA-50-5942       TCGA-50-5944 
"FAM71B WILD-TYPE" "FAM71B WILD-TYPE" "FAM71B WILD-TYPE" "FAM71B WILD-TYPE" 
      TCGA-50-5946       TCGA-50-6590       TCGA-50-6591       TCGA-50-6592 
"FAM71B WILD-TYPE" "FAM71B WILD-TYPE" "FAM71B WILD-TYPE" "FAM71B WILD-TYPE" 
      TCGA-50-6593       TCGA-50-6594       TCGA-50-6595       TCGA-50-6597 
  "FAM71B MUTATED" "FAM71B WILD-TYPE" "FAM71B WILD-TYPE" "FAM71B WILD-TYPE" 
      TCGA-55-1592       TCGA-55-1594       TCGA-55-1595       TCGA-55-1596 
"FAM71B WILD-TYPE" "FAM71B WILD-TYPE"   "FAM71B MUTATED" "FAM71B WILD-TYPE" 
      TCGA-55-5899       TCGA-55-6543       TCGA-55-6642       TCGA-55-6712 
"FAM71B WILD-TYPE" "FAM71B WILD-TYPE" "FAM71B WILD-TYPE" "FAM71B WILD-TYPE" 
      TCGA-64-1676       TCGA-64-1677       TCGA-64-1678       TCGA-64-1680 
"FAM71B WILD-TYPE" "FAM71B WILD-TYPE" "FAM71B WILD-TYPE" "FAM71B WILD-TYPE" 
      TCGA-64-5774       TCGA-64-5775       TCGA-64-5778       TCGA-64-5779 
"FAM71B WILD-TYPE"   "FAM71B MUTATED" "FAM71B WILD-TYPE" "FAM71B WILD-TYPE" 
      TCGA-64-5781       TCGA-64-5815       TCGA-67-3770       TCGA-67-3771 
"FAM71B WILD-TYPE"   "FAM71B MUTATED" "FAM71B WILD-TYPE" "FAM71B WILD-TYPE" 
      TCGA-67-3772       TCGA-67-3773       TCGA-67-3774       TCGA-67-6215 
"FAM71B WILD-TYPE" "FAM71B WILD-TYPE" "FAM71B WILD-TYPE" "FAM71B WILD-TYPE" 
      TCGA-67-6216       TCGA-67-6217       TCGA-71-6725       TCGA-73-4658 
"FAM71B WILD-TYPE" "FAM71B WILD-TYPE" "FAM71B WILD-TYPE" "FAM71B WILD-TYPE" 
      TCGA-73-4659       TCGA-73-4662       TCGA-73-4666       TCGA-73-4668 
"FAM71B WILD-TYPE" "FAM71B WILD-TYPE" "FAM71B WILD-TYPE" "FAM71B WILD-TYPE" 
      TCGA-73-4670       TCGA-73-4675       TCGA-73-4676       TCGA-73-4677 
"FAM71B WILD-TYPE" "FAM71B WILD-TYPE" "FAM71B WILD-TYPE" "FAM71B WILD-TYPE" 
      TCGA-91-6828       TCGA-91-6829       TCGA-91-6831       TCGA-91-6835 
"FAM71B WILD-TYPE" "FAM71B WILD-TYPE" "FAM71B WILD-TYPE" "FAM71B WILD-TYPE" 
      TCGA-91-6836 
  "FAM71B MUTATED" 
      TCGA-05-4249       TCGA-05-4250       TCGA-05-4382       TCGA-05-4384 
"FAM71B WILD-TYPE" "FAM71B WILD-TYPE" "FAM71B WILD-TYPE" "FAM71B WILD-TYPE" 
      TCGA-05-4390       TCGA-05-4396       TCGA-05-4397       TCGA-05-4398 
  "FAM71B MUTATED"   "FAM71B MUTATED" "FAM71B WILD-TYPE" "FAM71B WILD-TYPE" 
      TCGA-05-4402       TCGA-05-4405       TCGA-05-4415       TCGA-05-4417 
"FAM71B WILD-TYPE" "FAM71B WILD-TYPE" "FAM71B WILD-TYPE" "FAM71B WILD-TYPE" 
      TCGA-05-4418       TCGA-05-4420       TCGA-05-4424       TCGA-05-4426 
"FAM71B WILD-TYPE" "FAM71B WILD-TYPE" "FAM71B WILD-TYPE" "FAM71B WILD-TYPE" 
      TCGA-05-4427       TCGA-05-4430       TCGA-05-4432       TCGA-05-4433 
"FAM71B WILD-TYPE" "FAM71B WILD-TYPE" "FAM71B WILD-TYPE" "FAM71B WILD-TYPE" 
      TCGA-05-4434       TCGA-05-5420       TCGA-05-5423       TCGA-05-5425 
"FAM71B WILD-TYPE" "FAM71B WILD-TYPE" "FAM71B WILD-TYPE" "FAM71B WILD-TYPE" 
      TCGA-05-5429       TCGA-05-5715       TCGA-35-3615       TCGA-35-4122 
"FAM71B WILD-TYPE" "FAM71B WILD-TYPE"   "FAM71B MUTATED" "FAM71B WILD-TYPE" 
      TCGA-35-4123       TCGA-35-5375       TCGA-38-4625       TCGA-38-4626 
"FAM71B WILD-TYPE" "FAM71B WILD-TYPE"   "FAM71B MUTATED" "FAM71B WILD-TYPE" 
      TCGA-38-4627       TCGA-38-4628       TCGA-38-4629       TCGA-38-4630 
"FAM71B WILD-TYPE" "FAM71B WILD-TYPE" "FAM71B WILD-TYPE" "FAM71B WILD-TYPE" 
      TCGA-38-4631       TCGA-38-4632       TCGA-38-6178       TCGA-44-2655 
"FAM71B WILD-TYPE" "FAM71B WILD-TYPE" "FAM71B WILD-TYPE" "FAM71B WILD-TYPE" 
      TCGA-44-2656       TCGA-44-2657       TCGA-44-2659       TCGA-44-2661 
"FAM71B WILD-TYPE" "FAM71B WILD-TYPE" "FAM71B WILD-TYPE" "FAM71B WILD-TYPE" 
      TCGA-44-2662       TCGA-44-2665       TCGA-44-2666       TCGA-44-2668 
"FAM71B WILD-TYPE" "FAM71B WILD-TYPE" "FAM71B WILD-TYPE" "FAM71B WILD-TYPE" 
      TCGA-44-3396       TCGA-44-3398       TCGA-44-3918       TCGA-44-3919 
"FAM71B WILD-TYPE" "FAM71B WILD-TYPE" "FAM71B WILD-TYPE" "FAM71B WILD-TYPE" 
      TCGA-44-4112       TCGA-44-5643       TCGA-44-5645       TCGA-44-6144 
"FAM71B WILD-TYPE" "FAM71B WILD-TYPE" "FAM71B WILD-TYPE" "FAM71B WILD-TYPE" 
      TCGA-44-6145       TCGA-44-6146       TCGA-44-6147       TCGA-44-6148 
"FAM71B WILD-TYPE" "FAM71B WILD-TYPE" "FAM71B WILD-TYPE" "FAM71B WILD-TYPE" 
      TCGA-44-6774       TCGA-44-6775       TCGA-44-6776       TCGA-44-6777 
"FAM71B WILD-TYPE" "FAM71B WILD-TYPE"   "FAM71B MUTATED" "FAM71B WILD-TYPE" 
      TCGA-44-6778       TCGA-44-6779       TCGA-49-4486       TCGA-49-4487 
"FAM71B WILD-TYPE" "FAM71B WILD-TYPE" "FAM71B WILD-TYPE" "FAM71B WILD-TYPE" 
      TCGA-49-4488       TCGA-49-4490       TCGA-49-4494       TCGA-49-4501 
"FAM71B WILD-TYPE" "FAM71B WILD-TYPE" "FAM71B WILD-TYPE"   "FAM71B MUTATED" 
      TCGA-49-4505       TCGA-49-4506       TCGA-49-4507       TCGA-49-4510 
"FAM71B WILD-TYPE" "FAM71B WILD-TYPE" "FAM71B WILD-TYPE"   "FAM71B MUTATED" 
      TCGA-49-4512       TCGA-49-4514       TCGA-49-6742       TCGA-49-6743 
"FAM71B WILD-TYPE"   "FAM71B MUTATED" "FAM71B WILD-TYPE" "FAM71B WILD-TYPE" 
      TCGA-49-6744       TCGA-49-6745       TCGA-50-5044       TCGA-50-5045 
"FAM71B WILD-TYPE"   "FAM71B MUTATED" "FAM71B WILD-TYPE" "FAM71B WILD-TYPE" 
      TCGA-50-5049       TCGA-50-5051       TCGA-50-5055       TCGA-50-5066 
"FAM71B WILD-TYPE" "FAM71B WILD-TYPE" "FAM71B WILD-TYPE" "FAM71B WILD-TYPE" 
      TCGA-50-5068       TCGA-50-5072       TCGA-50-5930       TCGA-50-5931 
"FAM71B WILD-TYPE" "FAM71B WILD-TYPE" "FAM71B WILD-TYPE" "FAM71B WILD-TYPE" 
      TCGA-50-5932       TCGA-50-5933       TCGA-50-5935       TCGA-50-5936 
"FAM71B WILD-TYPE" "FAM71B WILD-TYPE" "FAM71B WILD-TYPE" "FAM71B WILD-TYPE" 
      TCGA-50-5939       TCGA-50-5941       TCGA-50-5942       TCGA-50-5944 
"FAM71B WILD-TYPE" "FAM71B WILD-TYPE" "FAM71B WILD-TYPE" "FAM71B WILD-TYPE" 
      TCGA-50-5946       TCGA-50-6590       TCGA-50-6591       TCGA-50-6592 
"FAM71B WILD-TYPE" "FAM71B WILD-TYPE" "FAM71B WILD-TYPE" "FAM71B WILD-TYPE" 
      TCGA-50-6593       TCGA-50-6594       TCGA-50-6595       TCGA-50-6597 
  "FAM71B MUTATED" "FAM71B WILD-TYPE" "FAM71B WILD-TYPE" "FAM71B WILD-TYPE" 
      TCGA-55-1592       TCGA-55-1594       TCGA-55-1595       TCGA-55-1596 
"FAM71B WILD-TYPE" "FAM71B WILD-TYPE"   "FAM71B MUTATED" "FAM71B WILD-TYPE" 
      TCGA-55-5899       TCGA-55-6543       TCGA-55-6642       TCGA-55-6712 
"FAM71B WILD-TYPE" "FAM71B WILD-TYPE" "FAM71B WILD-TYPE" "FAM71B WILD-TYPE" 
      TCGA-64-1676       TCGA-64-1677       TCGA-64-1678       TCGA-64-1680 
"FAM71B WILD-TYPE" "FAM71B WILD-TYPE" "FAM71B WILD-TYPE" "FAM71B WILD-TYPE" 
      TCGA-64-5774       TCGA-64-5775       TCGA-64-5778       TCGA-64-5779 
"FAM71B WILD-TYPE"   "FAM71B MUTATED" "FAM71B WILD-TYPE" "FAM71B WILD-TYPE" 
      TCGA-64-5781       TCGA-64-5815       TCGA-67-3770       TCGA-67-3771 
"FAM71B WILD-TYPE"   "FAM71B MUTATED" "FAM71B WILD-TYPE" "FAM71B WILD-TYPE" 
      TCGA-67-3772       TCGA-67-3773       TCGA-67-3774       TCGA-67-6215 
"FAM71B WILD-TYPE" "FAM71B WILD-TYPE" "FAM71B WILD-TYPE" "FAM71B WILD-TYPE" 
      TCGA-67-6216       TCGA-67-6217       TCGA-71-6725       TCGA-73-4658 
"FAM71B WILD-TYPE" "FAM71B WILD-TYPE" "FAM71B WILD-TYPE" "FAM71B WILD-TYPE" 
      TCGA-73-4659       TCGA-73-4662       TCGA-73-4666       TCGA-73-4668 
"FAM71B WILD-TYPE" "FAM71B WILD-TYPE" "FAM71B WILD-TYPE" "FAM71B WILD-TYPE" 
      TCGA-73-4670       TCGA-73-4675       TCGA-73-4676       TCGA-73-4677 
"FAM71B WILD-TYPE" "FAM71B WILD-TYPE" "FAM71B WILD-TYPE" "FAM71B WILD-TYPE" 
      TCGA-91-6828       TCGA-91-6829       TCGA-91-6831       TCGA-91-6835 
"FAM71B WILD-TYPE" "FAM71B WILD-TYPE" "FAM71B WILD-TYPE" "FAM71B WILD-TYPE" 
      TCGA-91-6836 
  "FAM71B MUTATED" 
[1] "hr=" "1.3"
D49V2, continuous
D49V3, binary
[1] "tbl2"
                  cls
clus               [,1] [,2]
  FAM71B MUTATED      9    5
  FAM71B WILD-TYPE   84   74
        clus
vv       FAM71B MUTATED FAM71B WILD-TYPE
  FEMALE              9               84
  MALE                5               74
D49V4, continuous
D49V5, multiclass
D49V6, multiclass
    clus
vv   FAM71B MUTATED FAM71B WILD-TYPE
  T1              4               37
  T2              8              100
  T3              0               14
  T4              2                6
D49V7, multiclass
       clus
vv      FAM71B MUTATED FAM71B WILD-TYPE
  N0                 9               86
  N1                 3               34
  N2+N3              2               33
D49V8, multiclass
    clus
vv   FAM71B MUTATED FAM71B WILD-TYPE
  M0             11              126
  M1              0                9
  MX              3               19
D49V9, multiclass
     clus
vv    FAM71B MUTATED FAM71B WILD-TYPE
  I                8               80
  II               2               31
  III              4               35
  IV               0                9
D49V10, binary
[1] "tbl2"
                  cls
clus               [,1] [,2]
  FAM71B MUTATED      0   14
  FAM71B WILD-TYPE   16  142
     clus
vv    FAM71B MUTATED FAM71B WILD-TYPE
  NO               0               16
  YES             14              142
D49V11, continuous
D49V12, continuous
D49V13, multiclass
                                             clus
vv                                            FAM71B MUTATED FAM71B WILD-TYPE
  CURRENT REFORMED SMOKER FOR < OR = 15 YEARS              5               57
  CURRENT REFORMED SMOKER FOR > 15 YEARS                   3               43
  CURRENT SMOKER                                           4               24
  LIFELONG NON-SMOKER                                      2               22
D49V14, continuous

Clustering(50) Variable = RPL10L MUTATION ANALYSIS
D50V1, survival
                  sevent
clus2               0  1
  RPL10L MUTATED    3  2
  RPL10L WILD-TYPE 96 48
  RPL10L MUTATED RPL10L WILD-TYPE 
               5              144 
  RPL10L MUTATED RPL10L WILD-TYPE 
               2               48 
$`RPL10L MUTATED`
TCGA-05-4427 TCGA-38-4631 TCGA-50-5045 TCGA-64-5778 TCGA-73-4668 
       26.01        11.64        71.47        30.44        15.35 

$`RPL10L WILD-TYPE`
TCGA-05-4249 TCGA-05-4250 TCGA-05-4382 TCGA-05-4384 TCGA-05-4390 TCGA-05-4396 
       38.07         3.98        19.92        14.01        37.02         9.96 
TCGA-05-4397 TCGA-05-4398 TCGA-05-4402 TCGA-05-4405 TCGA-05-4415 TCGA-05-4417 
       24.03        47.05         8.02        20.05         2.96        14.93 
TCGA-05-4418 TCGA-05-4420 TCGA-05-4424 TCGA-05-4426 TCGA-05-4430 TCGA-05-4432 
        8.98        29.95        30.02        26.01        25.02        25.02 
TCGA-05-4433 TCGA-05-4434 TCGA-05-5420 TCGA-05-5423 TCGA-05-5425 TCGA-05-5429 
       24.00        15.02         1.02         4.96         2.96         0.99 
TCGA-05-5715 TCGA-35-3615 TCGA-35-4122 TCGA-35-4123 TCGA-35-5375 TCGA-38-4625 
        2.04         0.46         7.36         5.95         8.68        47.61 
TCGA-38-4626 TCGA-38-4627 TCGA-38-4628 TCGA-38-4629 TCGA-38-4630 TCGA-38-4632 
       85.32        37.71        49.02        28.37        35.28        44.61 
TCGA-38-6178 TCGA-44-2655 TCGA-44-2656 TCGA-44-2657 TCGA-44-2659 TCGA-44-2661 
        5.19        18.87        19.10        13.15        17.39         3.39 
TCGA-44-2662 TCGA-44-2665 TCGA-44-2666 TCGA-44-2668 TCGA-44-3396 TCGA-44-3398 
       15.78        13.15         3.19         8.09        10.22         8.32 
TCGA-44-3918 TCGA-44-3919 TCGA-44-4112 TCGA-44-5643 TCGA-44-5645 TCGA-44-6144 
        6.44         6.21         4.60         3.48         6.84         0.30 
TCGA-44-6145 TCGA-44-6146 TCGA-44-6147 TCGA-44-6148 TCGA-44-6774 TCGA-44-6775 
        3.35         9.93         7.76         3.12         5.42         2.70 
TCGA-44-6776 TCGA-44-6777 TCGA-44-6778 TCGA-44-6779 TCGA-49-4486 TCGA-49-4487 
       63.72        32.45        36.49        16.41        76.21        28.11 
TCGA-49-4488 TCGA-49-4490 TCGA-49-4494 TCGA-49-4501 TCGA-49-4505 TCGA-49-4506 
       28.57        12.66        35.54        46.72        14.07        32.84 
TCGA-49-4507 TCGA-49-4510 TCGA-49-4512 TCGA-49-4514 TCGA-49-6742 TCGA-49-6743 
        8.81        29.46        29.75        43.20        15.02        12.13 
TCGA-49-6744 TCGA-49-6745 TCGA-50-5044 TCGA-50-5049 TCGA-50-5051 TCGA-50-5055 
       12.99         4.93        20.48        48.82        14.96        25.81 
TCGA-50-5066 TCGA-50-5068 TCGA-50-5072 TCGA-50-5930 TCGA-50-5931 TCGA-50-5932 
        9.76        49.28         8.05         9.27         8.78        35.87 
TCGA-50-5933 TCGA-50-5935 TCGA-50-5936 TCGA-50-5939 TCGA-50-5941 TCGA-50-5942 
       77.88        21.47         8.45        15.12         9.37         4.44 
TCGA-50-5944 TCGA-50-5946 TCGA-50-6590 TCGA-50-6591 TCGA-50-6592 TCGA-50-6593 
       12.26        11.47        42.31         3.88        25.51        11.05 
TCGA-50-6594 TCGA-50-6595 TCGA-50-6597 TCGA-55-1592 TCGA-55-1594 TCGA-55-1595 
       12.16         6.21        33.37        23.05        38.73        48.62 
TCGA-55-1596 TCGA-55-5899 TCGA-55-6543 TCGA-55-6642 TCGA-55-6712 TCGA-64-1676 
       45.17         2.86         0.07        32.61         0.79        56.81 
TCGA-64-1677 TCGA-64-1678 TCGA-64-1680 TCGA-64-5774 TCGA-64-5775 TCGA-64-5779 
       20.65        39.09        37.02        83.84         0.10        16.67 
TCGA-64-5781 TCGA-64-5815 TCGA-67-3770 TCGA-67-3771 TCGA-67-3772 TCGA-67-3773 
       39.52         7.33         0.99         1.97         0.59         2.04 
TCGA-67-3774 TCGA-67-6215 TCGA-67-6216 TCGA-67-6217 TCGA-71-6725 TCGA-73-4658 
        0.59         0.89         0.69        13.87         2.01        52.57 
TCGA-73-4659 TCGA-73-4662 TCGA-73-4666 TCGA-73-4670 TCGA-73-4675 TCGA-73-4676 
       23.38        29.95        20.28         0.46         1.32         4.01 
TCGA-73-4677 TCGA-91-6828 TCGA-91-6829 TCGA-91-6831 TCGA-91-6835 TCGA-91-6836 
        1.25         1.22        41.33         1.28         1.15         0.36 

  RPL10L MUTATED RPL10L WILD-TYPE 
           11.64             0.07 
  RPL10L MUTATED RPL10L WILD-TYPE 
           71.47            85.32 
  RPL10L MUTATED RPL10L WILD-TYPE 
           26.01            13.15 
[1] "11.6 - 71.5 (26.0)" "0.1 - 85.3 (13.2)" 
      TCGA-05-4249       TCGA-05-4250       TCGA-05-4382       TCGA-05-4384 
"RPL10L WILD-TYPE" "RPL10L WILD-TYPE" "RPL10L WILD-TYPE" "RPL10L WILD-TYPE" 
      TCGA-05-4390       TCGA-05-4396       TCGA-05-4397       TCGA-05-4398 
"RPL10L WILD-TYPE" "RPL10L WILD-TYPE" "RPL10L WILD-TYPE" "RPL10L WILD-TYPE" 
      TCGA-05-4402       TCGA-05-4405       TCGA-05-4415       TCGA-05-4417 
"RPL10L WILD-TYPE" "RPL10L WILD-TYPE" "RPL10L WILD-TYPE" "RPL10L WILD-TYPE" 
      TCGA-05-4418       TCGA-05-4420       TCGA-05-4424       TCGA-05-4426 
"RPL10L WILD-TYPE" "RPL10L WILD-TYPE" "RPL10L WILD-TYPE" "RPL10L WILD-TYPE" 
      TCGA-05-4427       TCGA-05-4430       TCGA-05-4432       TCGA-05-4433 
  "RPL10L MUTATED" "RPL10L WILD-TYPE" "RPL10L WILD-TYPE" "RPL10L WILD-TYPE" 
      TCGA-05-4434       TCGA-05-5420       TCGA-05-5423       TCGA-05-5425 
"RPL10L WILD-TYPE" "RPL10L WILD-TYPE" "RPL10L WILD-TYPE" "RPL10L WILD-TYPE" 
      TCGA-05-5429       TCGA-05-5715       TCGA-35-3615       TCGA-35-4122 
"RPL10L WILD-TYPE" "RPL10L WILD-TYPE" "RPL10L WILD-TYPE" "RPL10L WILD-TYPE" 
      TCGA-35-4123       TCGA-35-5375       TCGA-38-4625       TCGA-38-4626 
"RPL10L WILD-TYPE" "RPL10L WILD-TYPE" "RPL10L WILD-TYPE" "RPL10L WILD-TYPE" 
      TCGA-38-4627       TCGA-38-4628       TCGA-38-4629       TCGA-38-4630 
"RPL10L WILD-TYPE" "RPL10L WILD-TYPE" "RPL10L WILD-TYPE" "RPL10L WILD-TYPE" 
      TCGA-38-4631       TCGA-38-4632       TCGA-38-6178       TCGA-44-2655 
  "RPL10L MUTATED" "RPL10L WILD-TYPE" "RPL10L WILD-TYPE" "RPL10L WILD-TYPE" 
      TCGA-44-2656       TCGA-44-2657       TCGA-44-2659       TCGA-44-2661 
"RPL10L WILD-TYPE" "RPL10L WILD-TYPE" "RPL10L WILD-TYPE" "RPL10L WILD-TYPE" 
      TCGA-44-2662       TCGA-44-2665       TCGA-44-2666       TCGA-44-2668 
"RPL10L WILD-TYPE" "RPL10L WILD-TYPE" "RPL10L WILD-TYPE" "RPL10L WILD-TYPE" 
      TCGA-44-3396       TCGA-44-3398       TCGA-44-3918       TCGA-44-3919 
"RPL10L WILD-TYPE" "RPL10L WILD-TYPE" "RPL10L WILD-TYPE" "RPL10L WILD-TYPE" 
      TCGA-44-4112       TCGA-44-5643       TCGA-44-5645       TCGA-44-6144 
"RPL10L WILD-TYPE" "RPL10L WILD-TYPE" "RPL10L WILD-TYPE" "RPL10L WILD-TYPE" 
      TCGA-44-6145       TCGA-44-6146       TCGA-44-6147       TCGA-44-6148 
"RPL10L WILD-TYPE" "RPL10L WILD-TYPE" "RPL10L WILD-TYPE" "RPL10L WILD-TYPE" 
      TCGA-44-6774       TCGA-44-6775       TCGA-44-6776       TCGA-44-6777 
"RPL10L WILD-TYPE" "RPL10L WILD-TYPE" "RPL10L WILD-TYPE" "RPL10L WILD-TYPE" 
      TCGA-44-6778       TCGA-44-6779       TCGA-49-4486       TCGA-49-4487 
"RPL10L WILD-TYPE" "RPL10L WILD-TYPE" "RPL10L WILD-TYPE" "RPL10L WILD-TYPE" 
      TCGA-49-4488       TCGA-49-4490       TCGA-49-4494       TCGA-49-4501 
"RPL10L WILD-TYPE" "RPL10L WILD-TYPE" "RPL10L WILD-TYPE" "RPL10L WILD-TYPE" 
      TCGA-49-4505       TCGA-49-4506       TCGA-49-4507       TCGA-49-4510 
"RPL10L WILD-TYPE" "RPL10L WILD-TYPE" "RPL10L WILD-TYPE" "RPL10L WILD-TYPE" 
      TCGA-49-4512       TCGA-49-4514       TCGA-49-6742       TCGA-49-6743 
"RPL10L WILD-TYPE" "RPL10L WILD-TYPE" "RPL10L WILD-TYPE" "RPL10L WILD-TYPE" 
      TCGA-49-6744       TCGA-49-6745       TCGA-50-5044       TCGA-50-5045 
"RPL10L WILD-TYPE" "RPL10L WILD-TYPE" "RPL10L WILD-TYPE"   "RPL10L MUTATED" 
      TCGA-50-5049       TCGA-50-5051       TCGA-50-5055       TCGA-50-5066 
"RPL10L WILD-TYPE" "RPL10L WILD-TYPE" "RPL10L WILD-TYPE" "RPL10L WILD-TYPE" 
      TCGA-50-5068       TCGA-50-5072       TCGA-50-5930       TCGA-50-5931 
"RPL10L WILD-TYPE" "RPL10L WILD-TYPE" "RPL10L WILD-TYPE" "RPL10L WILD-TYPE" 
      TCGA-50-5932       TCGA-50-5933       TCGA-50-5935       TCGA-50-5936 
"RPL10L WILD-TYPE" "RPL10L WILD-TYPE" "RPL10L WILD-TYPE" "RPL10L WILD-TYPE" 
      TCGA-50-5939       TCGA-50-5941       TCGA-50-5942       TCGA-50-5944 
"RPL10L WILD-TYPE" "RPL10L WILD-TYPE" "RPL10L WILD-TYPE" "RPL10L WILD-TYPE" 
      TCGA-50-5946       TCGA-50-6590       TCGA-50-6591       TCGA-50-6592 
"RPL10L WILD-TYPE" "RPL10L WILD-TYPE" "RPL10L WILD-TYPE" "RPL10L WILD-TYPE" 
      TCGA-50-6593       TCGA-50-6594       TCGA-50-6595       TCGA-50-6597 
"RPL10L WILD-TYPE" "RPL10L WILD-TYPE" "RPL10L WILD-TYPE" "RPL10L WILD-TYPE" 
      TCGA-55-1592       TCGA-55-1594       TCGA-55-1595       TCGA-55-1596 
"RPL10L WILD-TYPE" "RPL10L WILD-TYPE" "RPL10L WILD-TYPE" "RPL10L WILD-TYPE" 
      TCGA-55-5899       TCGA-55-6543       TCGA-55-6642       TCGA-55-6712 
"RPL10L WILD-TYPE" "RPL10L WILD-TYPE" "RPL10L WILD-TYPE" "RPL10L WILD-TYPE" 
      TCGA-64-1676       TCGA-64-1677       TCGA-64-1678       TCGA-64-1680 
"RPL10L WILD-TYPE" "RPL10L WILD-TYPE" "RPL10L WILD-TYPE" "RPL10L WILD-TYPE" 
      TCGA-64-5774       TCGA-64-5775       TCGA-64-5778       TCGA-64-5779 
"RPL10L WILD-TYPE" "RPL10L WILD-TYPE"   "RPL10L MUTATED" "RPL10L WILD-TYPE" 
      TCGA-64-5781       TCGA-64-5815       TCGA-67-3770       TCGA-67-3771 
"RPL10L WILD-TYPE" "RPL10L WILD-TYPE" "RPL10L WILD-TYPE" "RPL10L WILD-TYPE" 
      TCGA-67-3772       TCGA-67-3773       TCGA-67-3774       TCGA-67-6215 
"RPL10L WILD-TYPE" "RPL10L WILD-TYPE" "RPL10L WILD-TYPE" "RPL10L WILD-TYPE" 
      TCGA-67-6216       TCGA-67-6217       TCGA-71-6725       TCGA-73-4658 
"RPL10L WILD-TYPE" "RPL10L WILD-TYPE" "RPL10L WILD-TYPE" "RPL10L WILD-TYPE" 
      TCGA-73-4659       TCGA-73-4662       TCGA-73-4666       TCGA-73-4668 
"RPL10L WILD-TYPE" "RPL10L WILD-TYPE" "RPL10L WILD-TYPE"   "RPL10L MUTATED" 
      TCGA-73-4670       TCGA-73-4675       TCGA-73-4676       TCGA-73-4677 
"RPL10L WILD-TYPE" "RPL10L WILD-TYPE" "RPL10L WILD-TYPE" "RPL10L WILD-TYPE" 
      TCGA-91-6828       TCGA-91-6829       TCGA-91-6831       TCGA-91-6835 
"RPL10L WILD-TYPE" "RPL10L WILD-TYPE" "RPL10L WILD-TYPE" "RPL10L WILD-TYPE" 
      TCGA-91-6836 
"RPL10L WILD-TYPE" 
      TCGA-05-4249       TCGA-05-4250       TCGA-05-4382       TCGA-05-4384 
"RPL10L WILD-TYPE" "RPL10L WILD-TYPE" "RPL10L WILD-TYPE" "RPL10L WILD-TYPE" 
      TCGA-05-4390       TCGA-05-4396       TCGA-05-4397       TCGA-05-4398 
"RPL10L WILD-TYPE" "RPL10L WILD-TYPE" "RPL10L WILD-TYPE" "RPL10L WILD-TYPE" 
      TCGA-05-4402       TCGA-05-4405       TCGA-05-4415       TCGA-05-4417 
"RPL10L WILD-TYPE" "RPL10L WILD-TYPE" "RPL10L WILD-TYPE" "RPL10L WILD-TYPE" 
      TCGA-05-4418       TCGA-05-4420       TCGA-05-4424       TCGA-05-4426 
"RPL10L WILD-TYPE" "RPL10L WILD-TYPE" "RPL10L WILD-TYPE" "RPL10L WILD-TYPE" 
      TCGA-05-4427       TCGA-05-4430       TCGA-05-4432       TCGA-05-4433 
  "RPL10L MUTATED" "RPL10L WILD-TYPE" "RPL10L WILD-TYPE" "RPL10L WILD-TYPE" 
      TCGA-05-4434       TCGA-05-5420       TCGA-05-5423       TCGA-05-5425 
"RPL10L WILD-TYPE" "RPL10L WILD-TYPE" "RPL10L WILD-TYPE" "RPL10L WILD-TYPE" 
      TCGA-05-5429       TCGA-05-5715       TCGA-35-3615       TCGA-35-4122 
"RPL10L WILD-TYPE" "RPL10L WILD-TYPE" "RPL10L WILD-TYPE" "RPL10L WILD-TYPE" 
      TCGA-35-4123       TCGA-35-5375       TCGA-38-4625       TCGA-38-4626 
"RPL10L WILD-TYPE" "RPL10L WILD-TYPE" "RPL10L WILD-TYPE" "RPL10L WILD-TYPE" 
      TCGA-38-4627       TCGA-38-4628       TCGA-38-4629       TCGA-38-4630 
"RPL10L WILD-TYPE" "RPL10L WILD-TYPE" "RPL10L WILD-TYPE" "RPL10L WILD-TYPE" 
      TCGA-38-4631       TCGA-38-4632       TCGA-38-6178       TCGA-44-2655 
  "RPL10L MUTATED" "RPL10L WILD-TYPE" "RPL10L WILD-TYPE" "RPL10L WILD-TYPE" 
      TCGA-44-2656       TCGA-44-2657       TCGA-44-2659       TCGA-44-2661 
"RPL10L WILD-TYPE" "RPL10L WILD-TYPE" "RPL10L WILD-TYPE" "RPL10L WILD-TYPE" 
      TCGA-44-2662       TCGA-44-2665       TCGA-44-2666       TCGA-44-2668 
"RPL10L WILD-TYPE" "RPL10L WILD-TYPE" "RPL10L WILD-TYPE" "RPL10L WILD-TYPE" 
      TCGA-44-3396       TCGA-44-3398       TCGA-44-3918       TCGA-44-3919 
"RPL10L WILD-TYPE" "RPL10L WILD-TYPE" "RPL10L WILD-TYPE" "RPL10L WILD-TYPE" 
      TCGA-44-4112       TCGA-44-5643       TCGA-44-5645       TCGA-44-6144 
"RPL10L WILD-TYPE" "RPL10L WILD-TYPE" "RPL10L WILD-TYPE" "RPL10L WILD-TYPE" 
      TCGA-44-6145       TCGA-44-6146       TCGA-44-6147       TCGA-44-6148 
"RPL10L WILD-TYPE" "RPL10L WILD-TYPE" "RPL10L WILD-TYPE" "RPL10L WILD-TYPE" 
      TCGA-44-6774       TCGA-44-6775       TCGA-44-6776       TCGA-44-6777 
"RPL10L WILD-TYPE" "RPL10L WILD-TYPE" "RPL10L WILD-TYPE" "RPL10L WILD-TYPE" 
      TCGA-44-6778       TCGA-44-6779       TCGA-49-4486       TCGA-49-4487 
"RPL10L WILD-TYPE" "RPL10L WILD-TYPE" "RPL10L WILD-TYPE" "RPL10L WILD-TYPE" 
      TCGA-49-4488       TCGA-49-4490       TCGA-49-4494       TCGA-49-4501 
"RPL10L WILD-TYPE" "RPL10L WILD-TYPE" "RPL10L WILD-TYPE" "RPL10L WILD-TYPE" 
      TCGA-49-4505       TCGA-49-4506       TCGA-49-4507       TCGA-49-4510 
"RPL10L WILD-TYPE" "RPL10L WILD-TYPE" "RPL10L WILD-TYPE" "RPL10L WILD-TYPE" 
      TCGA-49-4512       TCGA-49-4514       TCGA-49-6742       TCGA-49-6743 
"RPL10L WILD-TYPE" "RPL10L WILD-TYPE" "RPL10L WILD-TYPE" "RPL10L WILD-TYPE" 
      TCGA-49-6744       TCGA-49-6745       TCGA-50-5044       TCGA-50-5045 
"RPL10L WILD-TYPE" "RPL10L WILD-TYPE" "RPL10L WILD-TYPE"   "RPL10L MUTATED" 
      TCGA-50-5049       TCGA-50-5051       TCGA-50-5055       TCGA-50-5066 
"RPL10L WILD-TYPE" "RPL10L WILD-TYPE" "RPL10L WILD-TYPE" "RPL10L WILD-TYPE" 
      TCGA-50-5068       TCGA-50-5072       TCGA-50-5930       TCGA-50-5931 
"RPL10L WILD-TYPE" "RPL10L WILD-TYPE" "RPL10L WILD-TYPE" "RPL10L WILD-TYPE" 
      TCGA-50-5932       TCGA-50-5933       TCGA-50-5935       TCGA-50-5936 
"RPL10L WILD-TYPE" "RPL10L WILD-TYPE" "RPL10L WILD-TYPE" "RPL10L WILD-TYPE" 
      TCGA-50-5939       TCGA-50-5941       TCGA-50-5942       TCGA-50-5944 
"RPL10L WILD-TYPE" "RPL10L WILD-TYPE" "RPL10L WILD-TYPE" "RPL10L WILD-TYPE" 
      TCGA-50-5946       TCGA-50-6590       TCGA-50-6591       TCGA-50-6592 
"RPL10L WILD-TYPE" "RPL10L WILD-TYPE" "RPL10L WILD-TYPE" "RPL10L WILD-TYPE" 
      TCGA-50-6593       TCGA-50-6594       TCGA-50-6595       TCGA-50-6597 
"RPL10L WILD-TYPE" "RPL10L WILD-TYPE" "RPL10L WILD-TYPE" "RPL10L WILD-TYPE" 
      TCGA-55-1592       TCGA-55-1594       TCGA-55-1595       TCGA-55-1596 
"RPL10L WILD-TYPE" "RPL10L WILD-TYPE" "RPL10L WILD-TYPE" "RPL10L WILD-TYPE" 
      TCGA-55-5899       TCGA-55-6543       TCGA-55-6642       TCGA-55-6712 
"RPL10L WILD-TYPE" "RPL10L WILD-TYPE" "RPL10L WILD-TYPE" "RPL10L WILD-TYPE" 
      TCGA-64-1676       TCGA-64-1677       TCGA-64-1678       TCGA-64-1680 
"RPL10L WILD-TYPE" "RPL10L WILD-TYPE" "RPL10L WILD-TYPE" "RPL10L WILD-TYPE" 
      TCGA-64-5774       TCGA-64-5775       TCGA-64-5778       TCGA-64-5779 
"RPL10L WILD-TYPE" "RPL10L WILD-TYPE"   "RPL10L MUTATED" "RPL10L WILD-TYPE" 
      TCGA-64-5781       TCGA-64-5815       TCGA-67-3770       TCGA-67-3771 
"RPL10L WILD-TYPE" "RPL10L WILD-TYPE" "RPL10L WILD-TYPE" "RPL10L WILD-TYPE" 
      TCGA-67-3772       TCGA-67-3773       TCGA-67-3774       TCGA-67-6215 
"RPL10L WILD-TYPE" "RPL10L WILD-TYPE" "RPL10L WILD-TYPE" "RPL10L WILD-TYPE" 
      TCGA-67-6216       TCGA-67-6217       TCGA-71-6725       TCGA-73-4658 
"RPL10L WILD-TYPE" "RPL10L WILD-TYPE" "RPL10L WILD-TYPE" "RPL10L WILD-TYPE" 
      TCGA-73-4659       TCGA-73-4662       TCGA-73-4666       TCGA-73-4668 
"RPL10L WILD-TYPE" "RPL10L WILD-TYPE" "RPL10L WILD-TYPE"   "RPL10L MUTATED" 
      TCGA-73-4670       TCGA-73-4675       TCGA-73-4676       TCGA-73-4677 
"RPL10L WILD-TYPE" "RPL10L WILD-TYPE" "RPL10L WILD-TYPE" "RPL10L WILD-TYPE" 
      TCGA-91-6828       TCGA-91-6829       TCGA-91-6831       TCGA-91-6835 
"RPL10L WILD-TYPE" "RPL10L WILD-TYPE" "RPL10L WILD-TYPE" "RPL10L WILD-TYPE" 
      TCGA-91-6836 
"RPL10L WILD-TYPE" 
      TCGA-05-4249       TCGA-05-4250       TCGA-05-4382       TCGA-05-4384 
"RPL10L WILD-TYPE" "RPL10L WILD-TYPE" "RPL10L WILD-TYPE" "RPL10L WILD-TYPE" 
      TCGA-05-4390       TCGA-05-4396       TCGA-05-4397       TCGA-05-4398 
"RPL10L WILD-TYPE" "RPL10L WILD-TYPE" "RPL10L WILD-TYPE" "RPL10L WILD-TYPE" 
      TCGA-05-4402       TCGA-05-4405       TCGA-05-4415       TCGA-05-4417 
"RPL10L WILD-TYPE" "RPL10L WILD-TYPE" "RPL10L WILD-TYPE" "RPL10L WILD-TYPE" 
      TCGA-05-4418       TCGA-05-4420       TCGA-05-4424       TCGA-05-4426 
"RPL10L WILD-TYPE" "RPL10L WILD-TYPE" "RPL10L WILD-TYPE" "RPL10L WILD-TYPE" 
      TCGA-05-4427       TCGA-05-4430       TCGA-05-4432       TCGA-05-4433 
  "RPL10L MUTATED" "RPL10L WILD-TYPE" "RPL10L WILD-TYPE" "RPL10L WILD-TYPE" 
      TCGA-05-4434       TCGA-05-5420       TCGA-05-5423       TCGA-05-5425 
"RPL10L WILD-TYPE" "RPL10L WILD-TYPE" "RPL10L WILD-TYPE" "RPL10L WILD-TYPE" 
      TCGA-05-5429       TCGA-05-5715       TCGA-35-3615       TCGA-35-4122 
"RPL10L WILD-TYPE" "RPL10L WILD-TYPE" "RPL10L WILD-TYPE" "RPL10L WILD-TYPE" 
      TCGA-35-4123       TCGA-35-5375       TCGA-38-4625       TCGA-38-4626 
"RPL10L WILD-TYPE" "RPL10L WILD-TYPE" "RPL10L WILD-TYPE" "RPL10L WILD-TYPE" 
      TCGA-38-4627       TCGA-38-4628       TCGA-38-4629       TCGA-38-4630 
"RPL10L WILD-TYPE" "RPL10L WILD-TYPE" "RPL10L WILD-TYPE" "RPL10L WILD-TYPE" 
      TCGA-38-4631       TCGA-38-4632       TCGA-38-6178       TCGA-44-2655 
  "RPL10L MUTATED" "RPL10L WILD-TYPE" "RPL10L WILD-TYPE" "RPL10L WILD-TYPE" 
      TCGA-44-2656       TCGA-44-2657       TCGA-44-2659       TCGA-44-2661 
"RPL10L WILD-TYPE" "RPL10L WILD-TYPE" "RPL10L WILD-TYPE" "RPL10L WILD-TYPE" 
      TCGA-44-2662       TCGA-44-2665       TCGA-44-2666       TCGA-44-2668 
"RPL10L WILD-TYPE" "RPL10L WILD-TYPE" "RPL10L WILD-TYPE" "RPL10L WILD-TYPE" 
      TCGA-44-3396       TCGA-44-3398       TCGA-44-3918       TCGA-44-3919 
"RPL10L WILD-TYPE" "RPL10L WILD-TYPE" "RPL10L WILD-TYPE" "RPL10L WILD-TYPE" 
      TCGA-44-4112       TCGA-44-5643       TCGA-44-5645       TCGA-44-6144 
"RPL10L WILD-TYPE" "RPL10L WILD-TYPE" "RPL10L WILD-TYPE" "RPL10L WILD-TYPE" 
      TCGA-44-6145       TCGA-44-6146       TCGA-44-6147       TCGA-44-6148 
"RPL10L WILD-TYPE" "RPL10L WILD-TYPE" "RPL10L WILD-TYPE" "RPL10L WILD-TYPE" 
      TCGA-44-6774       TCGA-44-6775       TCGA-44-6776       TCGA-44-6777 
"RPL10L WILD-TYPE" "RPL10L WILD-TYPE" "RPL10L WILD-TYPE" "RPL10L WILD-TYPE" 
      TCGA-44-6778       TCGA-44-6779       TCGA-49-4486       TCGA-49-4487 
"RPL10L WILD-TYPE" "RPL10L WILD-TYPE" "RPL10L WILD-TYPE" "RPL10L WILD-TYPE" 
      TCGA-49-4488       TCGA-49-4490       TCGA-49-4494       TCGA-49-4501 
"RPL10L WILD-TYPE" "RPL10L WILD-TYPE" "RPL10L WILD-TYPE" "RPL10L WILD-TYPE" 
      TCGA-49-4505       TCGA-49-4506       TCGA-49-4507       TCGA-49-4510 
"RPL10L WILD-TYPE" "RPL10L WILD-TYPE" "RPL10L WILD-TYPE" "RPL10L WILD-TYPE" 
      TCGA-49-4512       TCGA-49-4514       TCGA-49-6742       TCGA-49-6743 
"RPL10L WILD-TYPE" "RPL10L WILD-TYPE" "RPL10L WILD-TYPE" "RPL10L WILD-TYPE" 
      TCGA-49-6744       TCGA-49-6745       TCGA-50-5044       TCGA-50-5045 
"RPL10L WILD-TYPE" "RPL10L WILD-TYPE" "RPL10L WILD-TYPE"   "RPL10L MUTATED" 
      TCGA-50-5049       TCGA-50-5051       TCGA-50-5055       TCGA-50-5066 
"RPL10L WILD-TYPE" "RPL10L WILD-TYPE" "RPL10L WILD-TYPE" "RPL10L WILD-TYPE" 
      TCGA-50-5068       TCGA-50-5072       TCGA-50-5930       TCGA-50-5931 
"RPL10L WILD-TYPE" "RPL10L WILD-TYPE" "RPL10L WILD-TYPE" "RPL10L WILD-TYPE" 
      TCGA-50-5932       TCGA-50-5933       TCGA-50-5935       TCGA-50-5936 
"RPL10L WILD-TYPE" "RPL10L WILD-TYPE" "RPL10L WILD-TYPE" "RPL10L WILD-TYPE" 
      TCGA-50-5939       TCGA-50-5941       TCGA-50-5942       TCGA-50-5944 
"RPL10L WILD-TYPE" "RPL10L WILD-TYPE" "RPL10L WILD-TYPE" "RPL10L WILD-TYPE" 
      TCGA-50-5946       TCGA-50-6590       TCGA-50-6591       TCGA-50-6592 
"RPL10L WILD-TYPE" "RPL10L WILD-TYPE" "RPL10L WILD-TYPE" "RPL10L WILD-TYPE" 
      TCGA-50-6593       TCGA-50-6594       TCGA-50-6595       TCGA-50-6597 
"RPL10L WILD-TYPE" "RPL10L WILD-TYPE" "RPL10L WILD-TYPE" "RPL10L WILD-TYPE" 
      TCGA-55-1592       TCGA-55-1594       TCGA-55-1595       TCGA-55-1596 
"RPL10L WILD-TYPE" "RPL10L WILD-TYPE" "RPL10L WILD-TYPE" "RPL10L WILD-TYPE" 
      TCGA-55-5899       TCGA-55-6543       TCGA-55-6642       TCGA-55-6712 
"RPL10L WILD-TYPE" "RPL10L WILD-TYPE" "RPL10L WILD-TYPE" "RPL10L WILD-TYPE" 
      TCGA-64-1676       TCGA-64-1677       TCGA-64-1678       TCGA-64-1680 
"RPL10L WILD-TYPE" "RPL10L WILD-TYPE" "RPL10L WILD-TYPE" "RPL10L WILD-TYPE" 
      TCGA-64-5774       TCGA-64-5775       TCGA-64-5778       TCGA-64-5779 
"RPL10L WILD-TYPE" "RPL10L WILD-TYPE"   "RPL10L MUTATED" "RPL10L WILD-TYPE" 
      TCGA-64-5781       TCGA-64-5815       TCGA-67-3770       TCGA-67-3771 
"RPL10L WILD-TYPE" "RPL10L WILD-TYPE" "RPL10L WILD-TYPE" "RPL10L WILD-TYPE" 
      TCGA-67-3772       TCGA-67-3773       TCGA-67-3774       TCGA-67-6215 
"RPL10L WILD-TYPE" "RPL10L WILD-TYPE" "RPL10L WILD-TYPE" "RPL10L WILD-TYPE" 
      TCGA-67-6216       TCGA-67-6217       TCGA-71-6725       TCGA-73-4658 
"RPL10L WILD-TYPE" "RPL10L WILD-TYPE" "RPL10L WILD-TYPE" "RPL10L WILD-TYPE" 
      TCGA-73-4659       TCGA-73-4662       TCGA-73-4666       TCGA-73-4668 
"RPL10L WILD-TYPE" "RPL10L WILD-TYPE" "RPL10L WILD-TYPE"   "RPL10L MUTATED" 
      TCGA-73-4670       TCGA-73-4675       TCGA-73-4676       TCGA-73-4677 
"RPL10L WILD-TYPE" "RPL10L WILD-TYPE" "RPL10L WILD-TYPE" "RPL10L WILD-TYPE" 
      TCGA-91-6828       TCGA-91-6829       TCGA-91-6831       TCGA-91-6835 
"RPL10L WILD-TYPE" "RPL10L WILD-TYPE" "RPL10L WILD-TYPE" "RPL10L WILD-TYPE" 
      TCGA-91-6836 
"RPL10L WILD-TYPE" 
[1] "hr=" "1.4"
D50V2, continuous
D50V3, binary
[1] "tbl2"
                  cls
clus               [,1] [,2]
  RPL10L MUTATED      4    2
  RPL10L WILD-TYPE   89   77
        clus
vv       RPL10L MUTATED RPL10L WILD-TYPE
  FEMALE              4               89
  MALE                2               77
D50V4, continuous
[1] "Remove cluster labels:" "RPL10L MUTATED"        
clus
  RPL10L MUTATED RPL10L WILD-TYPE 
               2               10 
      TCGA-35-4122       TCGA-35-4123       TCGA-35-5375       TCGA-64-1677 
"RPL10L WILD-TYPE" "RPL10L WILD-TYPE" "RPL10L WILD-TYPE" "RPL10L WILD-TYPE" 
      TCGA-71-6725       TCGA-73-4659       TCGA-73-4662       TCGA-73-4666 
"RPL10L WILD-TYPE" "RPL10L WILD-TYPE" "RPL10L WILD-TYPE" "RPL10L WILD-TYPE" 
      TCGA-73-4676       TCGA-75-5122 
"RPL10L WILD-TYPE" "RPL10L WILD-TYPE" 
D50V5, multiclass
D50V6, multiclass
    clus
vv   RPL10L MUTATED RPL10L WILD-TYPE
  T1              0               41
  T2              6              102
  T3              0               14
  T4              0                8
D50V7, multiclass
       clus
vv      RPL10L MUTATED RPL10L WILD-TYPE
  N0                 2               93
  N1                 3               34
  N2+N3              1               34
D50V8, multiclass
    clus
vv   RPL10L MUTATED RPL10L WILD-TYPE
  M0              5              132
  M1              1                8
  MX              0               22
D50V9, multiclass
     clus
vv    RPL10L MUTATED RPL10L WILD-TYPE
  I                3               85
  II               2               31
  III              0               39
  IV               1                8
D50V10, binary
[1] "tbl2"
                  cls
clus               [,1] [,2]
  RPL10L MUTATED      1    5
  RPL10L WILD-TYPE   15  151
     clus
vv    RPL10L MUTATED RPL10L WILD-TYPE
  NO               1               15
  YES              5              151
D50V11, continuous
D50V12, continuous
D50V13, multiclass
                                             clus
vv                                            RPL10L MUTATED RPL10L WILD-TYPE
  CURRENT REFORMED SMOKER FOR < OR = 15 YEARS              5               57
  CURRENT REFORMED SMOKER FOR > 15 YEARS                   0               46
  CURRENT SMOKER                                           0               28
  LIFELONG NON-SMOKER                                      0               24
D50V14, continuous

Clustering(51) Variable = EPHB1 MUTATION ANALYSIS
D51V1, survival
                 sevent
clus2              0  1
  EPHB1 MUTATED   13  4
  EPHB1 WILD-TYPE 86 46
  EPHB1 MUTATED EPHB1 WILD-TYPE 
             17             132 
  EPHB1 MUTATED EPHB1 WILD-TYPE 
              4              46 
$`EPHB1 MUTATED`
TCGA-05-4382 TCGA-05-4396 TCGA-05-4398 TCGA-05-4420 TCGA-05-4424 TCGA-05-4427 
       19.92         9.96        47.05        29.95        30.02        26.01 
TCGA-38-4625 TCGA-44-3918 TCGA-44-6777 TCGA-49-6743 TCGA-50-5049 TCGA-50-5072 
       47.61         6.44        32.45        12.13        48.82         8.05 
TCGA-55-5899 TCGA-67-3771 TCGA-73-4658 TCGA-73-4668 TCGA-73-4677 
        2.86         1.97        52.57        15.35         1.25 

$`EPHB1 WILD-TYPE`
TCGA-05-4249 TCGA-05-4250 TCGA-05-4384 TCGA-05-4390 TCGA-05-4397 TCGA-05-4402 
       38.07         3.98        14.01        37.02        24.03         8.02 
TCGA-05-4405 TCGA-05-4415 TCGA-05-4417 TCGA-05-4418 TCGA-05-4426 TCGA-05-4430 
       20.05         2.96        14.93         8.98        26.01        25.02 
TCGA-05-4432 TCGA-05-4433 TCGA-05-4434 TCGA-05-5420 TCGA-05-5423 TCGA-05-5425 
       25.02        24.00        15.02         1.02         4.96         2.96 
TCGA-05-5429 TCGA-05-5715 TCGA-35-3615 TCGA-35-4122 TCGA-35-4123 TCGA-35-5375 
        0.99         2.04         0.46         7.36         5.95         8.68 
TCGA-38-4626 TCGA-38-4627 TCGA-38-4628 TCGA-38-4629 TCGA-38-4630 TCGA-38-4631 
       85.32        37.71        49.02        28.37        35.28        11.64 
TCGA-38-4632 TCGA-38-6178 TCGA-44-2655 TCGA-44-2656 TCGA-44-2657 TCGA-44-2659 
       44.61         5.19        18.87        19.10        13.15        17.39 
TCGA-44-2661 TCGA-44-2662 TCGA-44-2665 TCGA-44-2666 TCGA-44-2668 TCGA-44-3396 
        3.39        15.78        13.15         3.19         8.09        10.22 
TCGA-44-3398 TCGA-44-3919 TCGA-44-4112 TCGA-44-5643 TCGA-44-5645 TCGA-44-6144 
        8.32         6.21         4.60         3.48         6.84         0.30 
TCGA-44-6145 TCGA-44-6146 TCGA-44-6147 TCGA-44-6148 TCGA-44-6774 TCGA-44-6775 
        3.35         9.93         7.76         3.12         5.42         2.70 
TCGA-44-6776 TCGA-44-6778 TCGA-44-6779 TCGA-49-4486 TCGA-49-4487 TCGA-49-4488 
       63.72        36.49        16.41        76.21        28.11        28.57 
TCGA-49-4490 TCGA-49-4494 TCGA-49-4501 TCGA-49-4505 TCGA-49-4506 TCGA-49-4507 
       12.66        35.54        46.72        14.07        32.84         8.81 
TCGA-49-4510 TCGA-49-4512 TCGA-49-4514 TCGA-49-6742 TCGA-49-6744 TCGA-49-6745 
       29.46        29.75        43.20        15.02        12.99         4.93 
TCGA-50-5044 TCGA-50-5045 TCGA-50-5051 TCGA-50-5055 TCGA-50-5066 TCGA-50-5068 
       20.48        71.47        14.96        25.81         9.76        49.28 
TCGA-50-5930 TCGA-50-5931 TCGA-50-5932 TCGA-50-5933 TCGA-50-5935 TCGA-50-5936 
        9.27         8.78        35.87        77.88        21.47         8.45 
TCGA-50-5939 TCGA-50-5941 TCGA-50-5942 TCGA-50-5944 TCGA-50-5946 TCGA-50-6590 
       15.12         9.37         4.44        12.26        11.47        42.31 
TCGA-50-6591 TCGA-50-6592 TCGA-50-6593 TCGA-50-6594 TCGA-50-6595 TCGA-50-6597 
        3.88        25.51        11.05        12.16         6.21        33.37 
TCGA-55-1592 TCGA-55-1594 TCGA-55-1595 TCGA-55-1596 TCGA-55-6543 TCGA-55-6642 
       23.05        38.73        48.62        45.17         0.07        32.61 
TCGA-55-6712 TCGA-64-1676 TCGA-64-1677 TCGA-64-1678 TCGA-64-1680 TCGA-64-5774 
        0.79        56.81        20.65        39.09        37.02        83.84 
TCGA-64-5775 TCGA-64-5778 TCGA-64-5779 TCGA-64-5781 TCGA-64-5815 TCGA-67-3770 
        0.10        30.44        16.67        39.52         7.33         0.99 
TCGA-67-3772 TCGA-67-3773 TCGA-67-3774 TCGA-67-6215 TCGA-67-6216 TCGA-67-6217 
        0.59         2.04         0.59         0.89         0.69        13.87 
TCGA-71-6725 TCGA-73-4659 TCGA-73-4662 TCGA-73-4666 TCGA-73-4670 TCGA-73-4675 
        2.01        23.38        29.95        20.28         0.46         1.32 
TCGA-73-4676 TCGA-91-6828 TCGA-91-6829 TCGA-91-6831 TCGA-91-6835 TCGA-91-6836 
        4.01         1.22        41.33         1.28         1.15         0.36 

  EPHB1 MUTATED EPHB1 WILD-TYPE 
           1.25            0.07 
  EPHB1 MUTATED EPHB1 WILD-TYPE 
          52.57           85.32 
  EPHB1 MUTATED EPHB1 WILD-TYPE 
          19.92           13.15 
[1] "1.2 - 52.6 (19.9)" "0.1 - 85.3 (13.2)"
     TCGA-05-4249      TCGA-05-4250      TCGA-05-4382      TCGA-05-4384 
"EPHB1 WILD-TYPE" "EPHB1 WILD-TYPE"   "EPHB1 MUTATED" "EPHB1 WILD-TYPE" 
     TCGA-05-4390      TCGA-05-4396      TCGA-05-4397      TCGA-05-4398 
"EPHB1 WILD-TYPE"   "EPHB1 MUTATED" "EPHB1 WILD-TYPE"   "EPHB1 MUTATED" 
     TCGA-05-4402      TCGA-05-4405      TCGA-05-4415      TCGA-05-4417 
"EPHB1 WILD-TYPE" "EPHB1 WILD-TYPE" "EPHB1 WILD-TYPE" "EPHB1 WILD-TYPE" 
     TCGA-05-4418      TCGA-05-4420      TCGA-05-4424      TCGA-05-4426 
"EPHB1 WILD-TYPE"   "EPHB1 MUTATED"   "EPHB1 MUTATED" "EPHB1 WILD-TYPE" 
     TCGA-05-4427      TCGA-05-4430      TCGA-05-4432      TCGA-05-4433 
  "EPHB1 MUTATED" "EPHB1 WILD-TYPE" "EPHB1 WILD-TYPE" "EPHB1 WILD-TYPE" 
     TCGA-05-4434      TCGA-05-5420      TCGA-05-5423      TCGA-05-5425 
"EPHB1 WILD-TYPE" "EPHB1 WILD-TYPE" "EPHB1 WILD-TYPE" "EPHB1 WILD-TYPE" 
     TCGA-05-5429      TCGA-05-5715      TCGA-35-3615      TCGA-35-4122 
"EPHB1 WILD-TYPE" "EPHB1 WILD-TYPE" "EPHB1 WILD-TYPE" "EPHB1 WILD-TYPE" 
     TCGA-35-4123      TCGA-35-5375      TCGA-38-4625      TCGA-38-4626 
"EPHB1 WILD-TYPE" "EPHB1 WILD-TYPE"   "EPHB1 MUTATED" "EPHB1 WILD-TYPE" 
     TCGA-38-4627      TCGA-38-4628      TCGA-38-4629      TCGA-38-4630 
"EPHB1 WILD-TYPE" "EPHB1 WILD-TYPE" "EPHB1 WILD-TYPE" "EPHB1 WILD-TYPE" 
     TCGA-38-4631      TCGA-38-4632      TCGA-38-6178      TCGA-44-2655 
"EPHB1 WILD-TYPE" "EPHB1 WILD-TYPE" "EPHB1 WILD-TYPE" "EPHB1 WILD-TYPE" 
     TCGA-44-2656      TCGA-44-2657      TCGA-44-2659      TCGA-44-2661 
"EPHB1 WILD-TYPE" "EPHB1 WILD-TYPE" "EPHB1 WILD-TYPE" "EPHB1 WILD-TYPE" 
     TCGA-44-2662      TCGA-44-2665      TCGA-44-2666      TCGA-44-2668 
"EPHB1 WILD-TYPE" "EPHB1 WILD-TYPE" "EPHB1 WILD-TYPE" "EPHB1 WILD-TYPE" 
     TCGA-44-3396      TCGA-44-3398      TCGA-44-3918      TCGA-44-3919 
"EPHB1 WILD-TYPE" "EPHB1 WILD-TYPE"   "EPHB1 MUTATED" "EPHB1 WILD-TYPE" 
     TCGA-44-4112      TCGA-44-5643      TCGA-44-5645      TCGA-44-6144 
"EPHB1 WILD-TYPE" "EPHB1 WILD-TYPE" "EPHB1 WILD-TYPE" "EPHB1 WILD-TYPE" 
     TCGA-44-6145      TCGA-44-6146      TCGA-44-6147      TCGA-44-6148 
"EPHB1 WILD-TYPE" "EPHB1 WILD-TYPE" "EPHB1 WILD-TYPE" "EPHB1 WILD-TYPE" 
     TCGA-44-6774      TCGA-44-6775      TCGA-44-6776      TCGA-44-6777 
"EPHB1 WILD-TYPE" "EPHB1 WILD-TYPE" "EPHB1 WILD-TYPE"   "EPHB1 MUTATED" 
     TCGA-44-6778      TCGA-44-6779      TCGA-49-4486      TCGA-49-4487 
"EPHB1 WILD-TYPE" "EPHB1 WILD-TYPE" "EPHB1 WILD-TYPE" "EPHB1 WILD-TYPE" 
     TCGA-49-4488      TCGA-49-4490      TCGA-49-4494      TCGA-49-4501 
"EPHB1 WILD-TYPE" "EPHB1 WILD-TYPE" "EPHB1 WILD-TYPE" "EPHB1 WILD-TYPE" 
     TCGA-49-4505      TCGA-49-4506      TCGA-49-4507      TCGA-49-4510 
"EPHB1 WILD-TYPE" "EPHB1 WILD-TYPE" "EPHB1 WILD-TYPE" "EPHB1 WILD-TYPE" 
     TCGA-49-4512      TCGA-49-4514      TCGA-49-6742      TCGA-49-6743 
"EPHB1 WILD-TYPE" "EPHB1 WILD-TYPE" "EPHB1 WILD-TYPE"   "EPHB1 MUTATED" 
     TCGA-49-6744      TCGA-49-6745      TCGA-50-5044      TCGA-50-5045 
"EPHB1 WILD-TYPE" "EPHB1 WILD-TYPE" "EPHB1 WILD-TYPE" "EPHB1 WILD-TYPE" 
     TCGA-50-5049      TCGA-50-5051      TCGA-50-5055      TCGA-50-5066 
  "EPHB1 MUTATED" "EPHB1 WILD-TYPE" "EPHB1 WILD-TYPE" "EPHB1 WILD-TYPE" 
     TCGA-50-5068      TCGA-50-5072      TCGA-50-5930      TCGA-50-5931 
"EPHB1 WILD-TYPE"   "EPHB1 MUTATED" "EPHB1 WILD-TYPE" "EPHB1 WILD-TYPE" 
     TCGA-50-5932      TCGA-50-5933      TCGA-50-5935      TCGA-50-5936 
"EPHB1 WILD-TYPE" "EPHB1 WILD-TYPE" "EPHB1 WILD-TYPE" "EPHB1 WILD-TYPE" 
     TCGA-50-5939      TCGA-50-5941      TCGA-50-5942      TCGA-50-5944 
"EPHB1 WILD-TYPE" "EPHB1 WILD-TYPE" "EPHB1 WILD-TYPE" "EPHB1 WILD-TYPE" 
     TCGA-50-5946      TCGA-50-6590      TCGA-50-6591      TCGA-50-6592 
"EPHB1 WILD-TYPE" "EPHB1 WILD-TYPE" "EPHB1 WILD-TYPE" "EPHB1 WILD-TYPE" 
     TCGA-50-6593      TCGA-50-6594      TCGA-50-6595      TCGA-50-6597 
"EPHB1 WILD-TYPE" "EPHB1 WILD-TYPE" "EPHB1 WILD-TYPE" "EPHB1 WILD-TYPE" 
     TCGA-55-1592      TCGA-55-1594      TCGA-55-1595      TCGA-55-1596 
"EPHB1 WILD-TYPE" "EPHB1 WILD-TYPE" "EPHB1 WILD-TYPE" "EPHB1 WILD-TYPE" 
     TCGA-55-5899      TCGA-55-6543      TCGA-55-6642      TCGA-55-6712 
  "EPHB1 MUTATED" "EPHB1 WILD-TYPE" "EPHB1 WILD-TYPE" "EPHB1 WILD-TYPE" 
     TCGA-64-1676      TCGA-64-1677      TCGA-64-1678      TCGA-64-1680 
"EPHB1 WILD-TYPE" "EPHB1 WILD-TYPE" "EPHB1 WILD-TYPE" "EPHB1 WILD-TYPE" 
     TCGA-64-5774      TCGA-64-5775      TCGA-64-5778      TCGA-64-5779 
"EPHB1 WILD-TYPE" "EPHB1 WILD-TYPE" "EPHB1 WILD-TYPE" "EPHB1 WILD-TYPE" 
     TCGA-64-5781      TCGA-64-5815      TCGA-67-3770      TCGA-67-3771 
"EPHB1 WILD-TYPE" "EPHB1 WILD-TYPE" "EPHB1 WILD-TYPE"   "EPHB1 MUTATED" 
     TCGA-67-3772      TCGA-67-3773      TCGA-67-3774      TCGA-67-6215 
"EPHB1 WILD-TYPE" "EPHB1 WILD-TYPE" "EPHB1 WILD-TYPE" "EPHB1 WILD-TYPE" 
     TCGA-67-6216      TCGA-67-6217      TCGA-71-6725      TCGA-73-4658 
"EPHB1 WILD-TYPE" "EPHB1 WILD-TYPE" "EPHB1 WILD-TYPE"   "EPHB1 MUTATED" 
     TCGA-73-4659      TCGA-73-4662      TCGA-73-4666      TCGA-73-4668 
"EPHB1 WILD-TYPE" "EPHB1 WILD-TYPE" "EPHB1 WILD-TYPE"   "EPHB1 MUTATED" 
     TCGA-73-4670      TCGA-73-4675      TCGA-73-4676      TCGA-73-4677 
"EPHB1 WILD-TYPE" "EPHB1 WILD-TYPE" "EPHB1 WILD-TYPE"   "EPHB1 MUTATED" 
     TCGA-91-6828      TCGA-91-6829      TCGA-91-6831      TCGA-91-6835 
"EPHB1 WILD-TYPE" "EPHB1 WILD-TYPE" "EPHB1 WILD-TYPE" "EPHB1 WILD-TYPE" 
     TCGA-91-6836 
"EPHB1 WILD-TYPE" 
     TCGA-05-4249      TCGA-05-4250      TCGA-05-4382      TCGA-05-4384 
"EPHB1 WILD-TYPE" "EPHB1 WILD-TYPE"   "EPHB1 MUTATED" "EPHB1 WILD-TYPE" 
     TCGA-05-4390      TCGA-05-4396      TCGA-05-4397      TCGA-05-4398 
"EPHB1 WILD-TYPE"   "EPHB1 MUTATED" "EPHB1 WILD-TYPE"   "EPHB1 MUTATED" 
     TCGA-05-4402      TCGA-05-4405      TCGA-05-4415      TCGA-05-4417 
"EPHB1 WILD-TYPE" "EPHB1 WILD-TYPE" "EPHB1 WILD-TYPE" "EPHB1 WILD-TYPE" 
     TCGA-05-4418      TCGA-05-4420      TCGA-05-4424      TCGA-05-4426 
"EPHB1 WILD-TYPE"   "EPHB1 MUTATED"   "EPHB1 MUTATED" "EPHB1 WILD-TYPE" 
     TCGA-05-4427      TCGA-05-4430      TCGA-05-4432      TCGA-05-4433 
  "EPHB1 MUTATED" "EPHB1 WILD-TYPE" "EPHB1 WILD-TYPE" "EPHB1 WILD-TYPE" 
     TCGA-05-4434      TCGA-05-5420      TCGA-05-5423      TCGA-05-5425 
"EPHB1 WILD-TYPE" "EPHB1 WILD-TYPE" "EPHB1 WILD-TYPE" "EPHB1 WILD-TYPE" 
     TCGA-05-5429      TCGA-05-5715      TCGA-35-3615      TCGA-35-4122 
"EPHB1 WILD-TYPE" "EPHB1 WILD-TYPE" "EPHB1 WILD-TYPE" "EPHB1 WILD-TYPE" 
     TCGA-35-4123      TCGA-35-5375      TCGA-38-4625      TCGA-38-4626 
"EPHB1 WILD-TYPE" "EPHB1 WILD-TYPE"   "EPHB1 MUTATED" "EPHB1 WILD-TYPE" 
     TCGA-38-4627      TCGA-38-4628      TCGA-38-4629      TCGA-38-4630 
"EPHB1 WILD-TYPE" "EPHB1 WILD-TYPE" "EPHB1 WILD-TYPE" "EPHB1 WILD-TYPE" 
     TCGA-38-4631      TCGA-38-4632      TCGA-38-6178      TCGA-44-2655 
"EPHB1 WILD-TYPE" "EPHB1 WILD-TYPE" "EPHB1 WILD-TYPE" "EPHB1 WILD-TYPE" 
     TCGA-44-2656      TCGA-44-2657      TCGA-44-2659      TCGA-44-2661 
"EPHB1 WILD-TYPE" "EPHB1 WILD-TYPE" "EPHB1 WILD-TYPE" "EPHB1 WILD-TYPE" 
     TCGA-44-2662      TCGA-44-2665      TCGA-44-2666      TCGA-44-2668 
"EPHB1 WILD-TYPE" "EPHB1 WILD-TYPE" "EPHB1 WILD-TYPE" "EPHB1 WILD-TYPE" 
     TCGA-44-3396      TCGA-44-3398      TCGA-44-3918      TCGA-44-3919 
"EPHB1 WILD-TYPE" "EPHB1 WILD-TYPE"   "EPHB1 MUTATED" "EPHB1 WILD-TYPE" 
     TCGA-44-4112      TCGA-44-5643      TCGA-44-5645      TCGA-44-6144 
"EPHB1 WILD-TYPE" "EPHB1 WILD-TYPE" "EPHB1 WILD-TYPE" "EPHB1 WILD-TYPE" 
     TCGA-44-6145      TCGA-44-6146      TCGA-44-6147      TCGA-44-6148 
"EPHB1 WILD-TYPE" "EPHB1 WILD-TYPE" "EPHB1 WILD-TYPE" "EPHB1 WILD-TYPE" 
     TCGA-44-6774      TCGA-44-6775      TCGA-44-6776      TCGA-44-6777 
"EPHB1 WILD-TYPE" "EPHB1 WILD-TYPE" "EPHB1 WILD-TYPE"   "EPHB1 MUTATED" 
     TCGA-44-6778      TCGA-44-6779      TCGA-49-4486      TCGA-49-4487 
"EPHB1 WILD-TYPE" "EPHB1 WILD-TYPE" "EPHB1 WILD-TYPE" "EPHB1 WILD-TYPE" 
     TCGA-49-4488      TCGA-49-4490      TCGA-49-4494      TCGA-49-4501 
"EPHB1 WILD-TYPE" "EPHB1 WILD-TYPE" "EPHB1 WILD-TYPE" "EPHB1 WILD-TYPE" 
     TCGA-49-4505      TCGA-49-4506      TCGA-49-4507      TCGA-49-4510 
"EPHB1 WILD-TYPE" "EPHB1 WILD-TYPE" "EPHB1 WILD-TYPE" "EPHB1 WILD-TYPE" 
     TCGA-49-4512      TCGA-49-4514      TCGA-49-6742      TCGA-49-6743 
"EPHB1 WILD-TYPE" "EPHB1 WILD-TYPE" "EPHB1 WILD-TYPE"   "EPHB1 MUTATED" 
     TCGA-49-6744      TCGA-49-6745      TCGA-50-5044      TCGA-50-5045 
"EPHB1 WILD-TYPE" "EPHB1 WILD-TYPE" "EPHB1 WILD-TYPE" "EPHB1 WILD-TYPE" 
     TCGA-50-5049      TCGA-50-5051      TCGA-50-5055      TCGA-50-5066 
  "EPHB1 MUTATED" "EPHB1 WILD-TYPE" "EPHB1 WILD-TYPE" "EPHB1 WILD-TYPE" 
     TCGA-50-5068      TCGA-50-5072      TCGA-50-5930      TCGA-50-5931 
"EPHB1 WILD-TYPE"   "EPHB1 MUTATED" "EPHB1 WILD-TYPE" "EPHB1 WILD-TYPE" 
     TCGA-50-5932      TCGA-50-5933      TCGA-50-5935      TCGA-50-5936 
"EPHB1 WILD-TYPE" "EPHB1 WILD-TYPE" "EPHB1 WILD-TYPE" "EPHB1 WILD-TYPE" 
     TCGA-50-5939      TCGA-50-5941      TCGA-50-5942      TCGA-50-5944 
"EPHB1 WILD-TYPE" "EPHB1 WILD-TYPE" "EPHB1 WILD-TYPE" "EPHB1 WILD-TYPE" 
     TCGA-50-5946      TCGA-50-6590      TCGA-50-6591      TCGA-50-6592 
"EPHB1 WILD-TYPE" "EPHB1 WILD-TYPE" "EPHB1 WILD-TYPE" "EPHB1 WILD-TYPE" 
     TCGA-50-6593      TCGA-50-6594      TCGA-50-6595      TCGA-50-6597 
"EPHB1 WILD-TYPE" "EPHB1 WILD-TYPE" "EPHB1 WILD-TYPE" "EPHB1 WILD-TYPE" 
     TCGA-55-1592      TCGA-55-1594      TCGA-55-1595      TCGA-55-1596 
"EPHB1 WILD-TYPE" "EPHB1 WILD-TYPE" "EPHB1 WILD-TYPE" "EPHB1 WILD-TYPE" 
     TCGA-55-5899      TCGA-55-6543      TCGA-55-6642      TCGA-55-6712 
  "EPHB1 MUTATED" "EPHB1 WILD-TYPE" "EPHB1 WILD-TYPE" "EPHB1 WILD-TYPE" 
     TCGA-64-1676      TCGA-64-1677      TCGA-64-1678      TCGA-64-1680 
"EPHB1 WILD-TYPE" "EPHB1 WILD-TYPE" "EPHB1 WILD-TYPE" "EPHB1 WILD-TYPE" 
     TCGA-64-5774      TCGA-64-5775      TCGA-64-5778      TCGA-64-5779 
"EPHB1 WILD-TYPE" "EPHB1 WILD-TYPE" "EPHB1 WILD-TYPE" "EPHB1 WILD-TYPE" 
     TCGA-64-5781      TCGA-64-5815      TCGA-67-3770      TCGA-67-3771 
"EPHB1 WILD-TYPE" "EPHB1 WILD-TYPE" "EPHB1 WILD-TYPE"   "EPHB1 MUTATED" 
     TCGA-67-3772      TCGA-67-3773      TCGA-67-3774      TCGA-67-6215 
"EPHB1 WILD-TYPE" "EPHB1 WILD-TYPE" "EPHB1 WILD-TYPE" "EPHB1 WILD-TYPE" 
     TCGA-67-6216      TCGA-67-6217      TCGA-71-6725      TCGA-73-4658 
"EPHB1 WILD-TYPE" "EPHB1 WILD-TYPE" "EPHB1 WILD-TYPE"   "EPHB1 MUTATED" 
     TCGA-73-4659      TCGA-73-4662      TCGA-73-4666      TCGA-73-4668 
"EPHB1 WILD-TYPE" "EPHB1 WILD-TYPE" "EPHB1 WILD-TYPE"   "EPHB1 MUTATED" 
     TCGA-73-4670      TCGA-73-4675      TCGA-73-4676      TCGA-73-4677 
"EPHB1 WILD-TYPE" "EPHB1 WILD-TYPE" "EPHB1 WILD-TYPE"   "EPHB1 MUTATED" 
     TCGA-91-6828      TCGA-91-6829      TCGA-91-6831      TCGA-91-6835 
"EPHB1 WILD-TYPE" "EPHB1 WILD-TYPE" "EPHB1 WILD-TYPE" "EPHB1 WILD-TYPE" 
     TCGA-91-6836 
"EPHB1 WILD-TYPE" 
     TCGA-05-4249      TCGA-05-4250      TCGA-05-4382      TCGA-05-4384 
"EPHB1 WILD-TYPE" "EPHB1 WILD-TYPE"   "EPHB1 MUTATED" "EPHB1 WILD-TYPE" 
     TCGA-05-4390      TCGA-05-4396      TCGA-05-4397      TCGA-05-4398 
"EPHB1 WILD-TYPE"   "EPHB1 MUTATED" "EPHB1 WILD-TYPE"   "EPHB1 MUTATED" 
     TCGA-05-4402      TCGA-05-4405      TCGA-05-4415      TCGA-05-4417 
"EPHB1 WILD-TYPE" "EPHB1 WILD-TYPE" "EPHB1 WILD-TYPE" "EPHB1 WILD-TYPE" 
     TCGA-05-4418      TCGA-05-4420      TCGA-05-4424      TCGA-05-4426 
"EPHB1 WILD-TYPE"   "EPHB1 MUTATED"   "EPHB1 MUTATED" "EPHB1 WILD-TYPE" 
     TCGA-05-4427      TCGA-05-4430      TCGA-05-4432      TCGA-05-4433 
  "EPHB1 MUTATED" "EPHB1 WILD-TYPE" "EPHB1 WILD-TYPE" "EPHB1 WILD-TYPE" 
     TCGA-05-4434      TCGA-05-5420      TCGA-05-5423      TCGA-05-5425 
"EPHB1 WILD-TYPE" "EPHB1 WILD-TYPE" "EPHB1 WILD-TYPE" "EPHB1 WILD-TYPE" 
     TCGA-05-5429      TCGA-05-5715      TCGA-35-3615      TCGA-35-4122 
"EPHB1 WILD-TYPE" "EPHB1 WILD-TYPE" "EPHB1 WILD-TYPE" "EPHB1 WILD-TYPE" 
     TCGA-35-4123      TCGA-35-5375      TCGA-38-4625      TCGA-38-4626 
"EPHB1 WILD-TYPE" "EPHB1 WILD-TYPE"   "EPHB1 MUTATED" "EPHB1 WILD-TYPE" 
     TCGA-38-4627      TCGA-38-4628      TCGA-38-4629      TCGA-38-4630 
"EPHB1 WILD-TYPE" "EPHB1 WILD-TYPE" "EPHB1 WILD-TYPE" "EPHB1 WILD-TYPE" 
     TCGA-38-4631      TCGA-38-4632      TCGA-38-6178      TCGA-44-2655 
"EPHB1 WILD-TYPE" "EPHB1 WILD-TYPE" "EPHB1 WILD-TYPE" "EPHB1 WILD-TYPE" 
     TCGA-44-2656      TCGA-44-2657      TCGA-44-2659      TCGA-44-2661 
"EPHB1 WILD-TYPE" "EPHB1 WILD-TYPE" "EPHB1 WILD-TYPE" "EPHB1 WILD-TYPE" 
     TCGA-44-2662      TCGA-44-2665      TCGA-44-2666      TCGA-44-2668 
"EPHB1 WILD-TYPE" "EPHB1 WILD-TYPE" "EPHB1 WILD-TYPE" "EPHB1 WILD-TYPE" 
     TCGA-44-3396      TCGA-44-3398      TCGA-44-3918      TCGA-44-3919 
"EPHB1 WILD-TYPE" "EPHB1 WILD-TYPE"   "EPHB1 MUTATED" "EPHB1 WILD-TYPE" 
     TCGA-44-4112      TCGA-44-5643      TCGA-44-5645      TCGA-44-6144 
"EPHB1 WILD-TYPE" "EPHB1 WILD-TYPE" "EPHB1 WILD-TYPE" "EPHB1 WILD-TYPE" 
     TCGA-44-6145      TCGA-44-6146      TCGA-44-6147      TCGA-44-6148 
"EPHB1 WILD-TYPE" "EPHB1 WILD-TYPE" "EPHB1 WILD-TYPE" "EPHB1 WILD-TYPE" 
     TCGA-44-6774      TCGA-44-6775      TCGA-44-6776      TCGA-44-6777 
"EPHB1 WILD-TYPE" "EPHB1 WILD-TYPE" "EPHB1 WILD-TYPE"   "EPHB1 MUTATED" 
     TCGA-44-6778      TCGA-44-6779      TCGA-49-4486      TCGA-49-4487 
"EPHB1 WILD-TYPE" "EPHB1 WILD-TYPE" "EPHB1 WILD-TYPE" "EPHB1 WILD-TYPE" 
     TCGA-49-4488      TCGA-49-4490      TCGA-49-4494      TCGA-49-4501 
"EPHB1 WILD-TYPE" "EPHB1 WILD-TYPE" "EPHB1 WILD-TYPE" "EPHB1 WILD-TYPE" 
     TCGA-49-4505      TCGA-49-4506      TCGA-49-4507      TCGA-49-4510 
"EPHB1 WILD-TYPE" "EPHB1 WILD-TYPE" "EPHB1 WILD-TYPE" "EPHB1 WILD-TYPE" 
     TCGA-49-4512      TCGA-49-4514      TCGA-49-6742      TCGA-49-6743 
"EPHB1 WILD-TYPE" "EPHB1 WILD-TYPE" "EPHB1 WILD-TYPE"   "EPHB1 MUTATED" 
     TCGA-49-6744      TCGA-49-6745      TCGA-50-5044      TCGA-50-5045 
"EPHB1 WILD-TYPE" "EPHB1 WILD-TYPE" "EPHB1 WILD-TYPE" "EPHB1 WILD-TYPE" 
     TCGA-50-5049      TCGA-50-5051      TCGA-50-5055      TCGA-50-5066 
  "EPHB1 MUTATED" "EPHB1 WILD-TYPE" "EPHB1 WILD-TYPE" "EPHB1 WILD-TYPE" 
     TCGA-50-5068      TCGA-50-5072      TCGA-50-5930      TCGA-50-5931 
"EPHB1 WILD-TYPE"   "EPHB1 MUTATED" "EPHB1 WILD-TYPE" "EPHB1 WILD-TYPE" 
     TCGA-50-5932      TCGA-50-5933      TCGA-50-5935      TCGA-50-5936 
"EPHB1 WILD-TYPE" "EPHB1 WILD-TYPE" "EPHB1 WILD-TYPE" "EPHB1 WILD-TYPE" 
     TCGA-50-5939      TCGA-50-5941      TCGA-50-5942      TCGA-50-5944 
"EPHB1 WILD-TYPE" "EPHB1 WILD-TYPE" "EPHB1 WILD-TYPE" "EPHB1 WILD-TYPE" 
     TCGA-50-5946      TCGA-50-6590      TCGA-50-6591      TCGA-50-6592 
"EPHB1 WILD-TYPE" "EPHB1 WILD-TYPE" "EPHB1 WILD-TYPE" "EPHB1 WILD-TYPE" 
     TCGA-50-6593      TCGA-50-6594      TCGA-50-6595      TCGA-50-6597 
"EPHB1 WILD-TYPE" "EPHB1 WILD-TYPE" "EPHB1 WILD-TYPE" "EPHB1 WILD-TYPE" 
     TCGA-55-1592      TCGA-55-1594      TCGA-55-1595      TCGA-55-1596 
"EPHB1 WILD-TYPE" "EPHB1 WILD-TYPE" "EPHB1 WILD-TYPE" "EPHB1 WILD-TYPE" 
     TCGA-55-5899      TCGA-55-6543      TCGA-55-6642      TCGA-55-6712 
  "EPHB1 MUTATED" "EPHB1 WILD-TYPE" "EPHB1 WILD-TYPE" "EPHB1 WILD-TYPE" 
     TCGA-64-1676      TCGA-64-1677      TCGA-64-1678      TCGA-64-1680 
"EPHB1 WILD-TYPE" "EPHB1 WILD-TYPE" "EPHB1 WILD-TYPE" "EPHB1 WILD-TYPE" 
     TCGA-64-5774      TCGA-64-5775      TCGA-64-5778      TCGA-64-5779 
"EPHB1 WILD-TYPE" "EPHB1 WILD-TYPE" "EPHB1 WILD-TYPE" "EPHB1 WILD-TYPE" 
     TCGA-64-5781      TCGA-64-5815      TCGA-67-3770      TCGA-67-3771 
"EPHB1 WILD-TYPE" "EPHB1 WILD-TYPE" "EPHB1 WILD-TYPE"   "EPHB1 MUTATED" 
     TCGA-67-3772      TCGA-67-3773      TCGA-67-3774      TCGA-67-6215 
"EPHB1 WILD-TYPE" "EPHB1 WILD-TYPE" "EPHB1 WILD-TYPE" "EPHB1 WILD-TYPE" 
     TCGA-67-6216      TCGA-67-6217      TCGA-71-6725      TCGA-73-4658 
"EPHB1 WILD-TYPE" "EPHB1 WILD-TYPE" "EPHB1 WILD-TYPE"   "EPHB1 MUTATED" 
     TCGA-73-4659      TCGA-73-4662      TCGA-73-4666      TCGA-73-4668 
"EPHB1 WILD-TYPE" "EPHB1 WILD-TYPE" "EPHB1 WILD-TYPE"   "EPHB1 MUTATED" 
     TCGA-73-4670      TCGA-73-4675      TCGA-73-4676      TCGA-73-4677 
"EPHB1 WILD-TYPE" "EPHB1 WILD-TYPE" "EPHB1 WILD-TYPE"   "EPHB1 MUTATED" 
     TCGA-91-6828      TCGA-91-6829      TCGA-91-6831      TCGA-91-6835 
"EPHB1 WILD-TYPE" "EPHB1 WILD-TYPE" "EPHB1 WILD-TYPE" "EPHB1 WILD-TYPE" 
     TCGA-91-6836 
"EPHB1 WILD-TYPE" 
[1] "hr=" "1.8"
D51V2, continuous
D51V3, binary
[1] "tbl2"
                 cls
clus              [,1] [,2]
  EPHB1 MUTATED      9    9
  EPHB1 WILD-TYPE   84   70
        clus
vv       EPHB1 MUTATED EPHB1 WILD-TYPE
  FEMALE             9              84
  MALE               9              70
D51V4, continuous
[1] "Remove cluster labels:" "EPHB1 MUTATED"         
clus
  EPHB1 MUTATED EPHB1 WILD-TYPE 
              1              11 
     TCGA-35-4122      TCGA-35-4123      TCGA-35-5375      TCGA-64-1677 
"EPHB1 WILD-TYPE" "EPHB1 WILD-TYPE" "EPHB1 WILD-TYPE" "EPHB1 WILD-TYPE" 
     TCGA-64-5778      TCGA-71-6725      TCGA-73-4659      TCGA-73-4662 
"EPHB1 WILD-TYPE" "EPHB1 WILD-TYPE" "EPHB1 WILD-TYPE" "EPHB1 WILD-TYPE" 
     TCGA-73-4666      TCGA-73-4676      TCGA-75-5122 
"EPHB1 WILD-TYPE" "EPHB1 WILD-TYPE" "EPHB1 WILD-TYPE" 
D51V5, multiclass
D51V6, multiclass
    clus
vv   EPHB1 MUTATED EPHB1 WILD-TYPE
  T1             4              37
  T2            11              97
  T3             1              13
  T4             2               6
D51V7, multiclass
       clus
vv      EPHB1 MUTATED EPHB1 WILD-TYPE
  N0               10              85
  N1                4              33
  N2+N3             3              32
D51V8, multiclass
    clus
vv   EPHB1 MUTATED EPHB1 WILD-TYPE
  M0            16             121
  M1             0               9
  MX             2              20
D51V9, multiclass
     clus
vv    EPHB1 MUTATED EPHB1 WILD-TYPE
  I              11              77
  II              3              30
  III             4              35
  IV              0               9
D51V10, binary
[1] "tbl2"
                 cls
clus              [,1] [,2]
  EPHB1 MUTATED      3   15
  EPHB1 WILD-TYPE   13  141
     clus
vv    EPHB1 MUTATED EPHB1 WILD-TYPE
  NO              3              13
  YES            15             141
D51V11, continuous
D51V12, continuous
D51V13, multiclass
                                             clus
vv                                            EPHB1 MUTATED EPHB1 WILD-TYPE
  CURRENT REFORMED SMOKER FOR < OR = 15 YEARS             8              54
  CURRENT REFORMED SMOKER FOR > 15 YEARS                  5              41
  CURRENT SMOKER                                          4              24
  LIFELONG NON-SMOKER                                     0              24
D51V14, continuous

Clustering(52) Variable = HGF MUTATION ANALYSIS
D52V1, survival
               sevent
clus2            0  1
  HGF MUTATED    9  4
  HGF WILD-TYPE 90 46
  HGF MUTATED HGF WILD-TYPE 
           13           136 
  HGF MUTATED HGF WILD-TYPE 
            4            46 
$`HGF MUTATED`
TCGA-05-4382 TCGA-05-4396 TCGA-05-4420 TCGA-05-4424 TCGA-05-4427 TCGA-38-4632 
       19.92         9.96        29.95        30.02        26.01        44.61 
TCGA-44-2659 TCGA-44-3918 TCGA-44-4112 TCGA-49-4506 TCGA-50-5049 TCGA-64-1676 
       17.39         6.44         4.60        32.84        48.82        56.81 
TCGA-91-6829 
       41.33 

$`HGF WILD-TYPE`
TCGA-05-4249 TCGA-05-4250 TCGA-05-4384 TCGA-05-4390 TCGA-05-4397 TCGA-05-4398 
       38.07         3.98        14.01        37.02        24.03        47.05 
TCGA-05-4402 TCGA-05-4405 TCGA-05-4415 TCGA-05-4417 TCGA-05-4418 TCGA-05-4426 
        8.02        20.05         2.96        14.93         8.98        26.01 
TCGA-05-4430 TCGA-05-4432 TCGA-05-4433 TCGA-05-4434 TCGA-05-5420 TCGA-05-5423 
       25.02        25.02        24.00        15.02         1.02         4.96 
TCGA-05-5425 TCGA-05-5429 TCGA-05-5715 TCGA-35-3615 TCGA-35-4122 TCGA-35-4123 
        2.96         0.99         2.04         0.46         7.36         5.95 
TCGA-35-5375 TCGA-38-4625 TCGA-38-4626 TCGA-38-4627 TCGA-38-4628 TCGA-38-4629 
        8.68        47.61        85.32        37.71        49.02        28.37 
TCGA-38-4630 TCGA-38-4631 TCGA-38-6178 TCGA-44-2655 TCGA-44-2656 TCGA-44-2657 
       35.28        11.64         5.19        18.87        19.10        13.15 
TCGA-44-2661 TCGA-44-2662 TCGA-44-2665 TCGA-44-2666 TCGA-44-2668 TCGA-44-3396 
        3.39        15.78        13.15         3.19         8.09        10.22 
TCGA-44-3398 TCGA-44-3919 TCGA-44-5643 TCGA-44-5645 TCGA-44-6144 TCGA-44-6145 
        8.32         6.21         3.48         6.84         0.30         3.35 
TCGA-44-6146 TCGA-44-6147 TCGA-44-6148 TCGA-44-6774 TCGA-44-6775 TCGA-44-6776 
        9.93         7.76         3.12         5.42         2.70        63.72 
TCGA-44-6777 TCGA-44-6778 TCGA-44-6779 TCGA-49-4486 TCGA-49-4487 TCGA-49-4488 
       32.45        36.49        16.41        76.21        28.11        28.57 
TCGA-49-4490 TCGA-49-4494 TCGA-49-4501 TCGA-49-4505 TCGA-49-4507 TCGA-49-4510 
       12.66        35.54        46.72        14.07         8.81        29.46 
TCGA-49-4512 TCGA-49-4514 TCGA-49-6742 TCGA-49-6743 TCGA-49-6744 TCGA-49-6745 
       29.75        43.20        15.02        12.13        12.99         4.93 
TCGA-50-5044 TCGA-50-5045 TCGA-50-5051 TCGA-50-5055 TCGA-50-5066 TCGA-50-5068 
       20.48        71.47        14.96        25.81         9.76        49.28 
TCGA-50-5072 TCGA-50-5930 TCGA-50-5931 TCGA-50-5932 TCGA-50-5933 TCGA-50-5935 
        8.05         9.27         8.78        35.87        77.88        21.47 
TCGA-50-5936 TCGA-50-5939 TCGA-50-5941 TCGA-50-5942 TCGA-50-5944 TCGA-50-5946 
        8.45        15.12         9.37         4.44        12.26        11.47 
TCGA-50-6590 TCGA-50-6591 TCGA-50-6592 TCGA-50-6593 TCGA-50-6594 TCGA-50-6595 
       42.31         3.88        25.51        11.05        12.16         6.21 
TCGA-50-6597 TCGA-55-1592 TCGA-55-1594 TCGA-55-1595 TCGA-55-1596 TCGA-55-5899 
       33.37        23.05        38.73        48.62        45.17         2.86 
TCGA-55-6543 TCGA-55-6642 TCGA-55-6712 TCGA-64-1677 TCGA-64-1678 TCGA-64-1680 
        0.07        32.61         0.79        20.65        39.09        37.02 
TCGA-64-5774 TCGA-64-5775 TCGA-64-5778 TCGA-64-5779 TCGA-64-5781 TCGA-64-5815 
       83.84         0.10        30.44        16.67        39.52         7.33 
TCGA-67-3770 TCGA-67-3771 TCGA-67-3772 TCGA-67-3773 TCGA-67-3774 TCGA-67-6215 
        0.99         1.97         0.59         2.04         0.59         0.89 
TCGA-67-6216 TCGA-67-6217 TCGA-71-6725 TCGA-73-4658 TCGA-73-4659 TCGA-73-4662 
        0.69        13.87         2.01        52.57        23.38        29.95 
TCGA-73-4666 TCGA-73-4668 TCGA-73-4670 TCGA-73-4675 TCGA-73-4676 TCGA-73-4677 
       20.28        15.35         0.46         1.32         4.01         1.25 
TCGA-91-6828 TCGA-91-6831 TCGA-91-6835 TCGA-91-6836 
        1.22         1.28         1.15         0.36 

  HGF MUTATED HGF WILD-TYPE 
         4.60          0.07 
  HGF MUTATED HGF WILD-TYPE 
        56.81         85.32 
  HGF MUTATED HGF WILD-TYPE 
       29.950        12.825 
[1] "4.6 - 56.8 (29.9)" "0.1 - 85.3 (12.8)"
   TCGA-05-4249    TCGA-05-4250    TCGA-05-4382    TCGA-05-4384    TCGA-05-4390 
"HGF WILD-TYPE" "HGF WILD-TYPE"   "HGF MUTATED" "HGF WILD-TYPE" "HGF WILD-TYPE" 
   TCGA-05-4396    TCGA-05-4397    TCGA-05-4398    TCGA-05-4402    TCGA-05-4405 
  "HGF MUTATED" "HGF WILD-TYPE" "HGF WILD-TYPE" "HGF WILD-TYPE" "HGF WILD-TYPE" 
   TCGA-05-4415    TCGA-05-4417    TCGA-05-4418    TCGA-05-4420    TCGA-05-4424 
"HGF WILD-TYPE" "HGF WILD-TYPE" "HGF WILD-TYPE"   "HGF MUTATED"   "HGF MUTATED" 
   TCGA-05-4426    TCGA-05-4427    TCGA-05-4430    TCGA-05-4432    TCGA-05-4433 
"HGF WILD-TYPE"   "HGF MUTATED" "HGF WILD-TYPE" "HGF WILD-TYPE" "HGF WILD-TYPE" 
   TCGA-05-4434    TCGA-05-5420    TCGA-05-5423    TCGA-05-5425    TCGA-05-5429 
"HGF WILD-TYPE" "HGF WILD-TYPE" "HGF WILD-TYPE" "HGF WILD-TYPE" "HGF WILD-TYPE" 
   TCGA-05-5715    TCGA-35-3615    TCGA-35-4122    TCGA-35-4123    TCGA-35-5375 
"HGF WILD-TYPE" "HGF WILD-TYPE" "HGF WILD-TYPE" "HGF WILD-TYPE" "HGF WILD-TYPE" 
   TCGA-38-4625    TCGA-38-4626    TCGA-38-4627    TCGA-38-4628    TCGA-38-4629 
"HGF WILD-TYPE" "HGF WILD-TYPE" "HGF WILD-TYPE" "HGF WILD-TYPE" "HGF WILD-TYPE" 
   TCGA-38-4630    TCGA-38-4631    TCGA-38-4632    TCGA-38-6178    TCGA-44-2655 
"HGF WILD-TYPE" "HGF WILD-TYPE"   "HGF MUTATED" "HGF WILD-TYPE" "HGF WILD-TYPE" 
   TCGA-44-2656    TCGA-44-2657    TCGA-44-2659    TCGA-44-2661    TCGA-44-2662 
"HGF WILD-TYPE" "HGF WILD-TYPE"   "HGF MUTATED" "HGF WILD-TYPE" "HGF WILD-TYPE" 
   TCGA-44-2665    TCGA-44-2666    TCGA-44-2668    TCGA-44-3396    TCGA-44-3398 
"HGF WILD-TYPE" "HGF WILD-TYPE" "HGF WILD-TYPE" "HGF WILD-TYPE" "HGF WILD-TYPE" 
   TCGA-44-3918    TCGA-44-3919    TCGA-44-4112    TCGA-44-5643    TCGA-44-5645 
  "HGF MUTATED" "HGF WILD-TYPE"   "HGF MUTATED" "HGF WILD-TYPE" "HGF WILD-TYPE" 
   TCGA-44-6144    TCGA-44-6145    TCGA-44-6146    TCGA-44-6147    TCGA-44-6148 
"HGF WILD-TYPE" "HGF WILD-TYPE" "HGF WILD-TYPE" "HGF WILD-TYPE" "HGF WILD-TYPE" 
   TCGA-44-6774    TCGA-44-6775    TCGA-44-6776    TCGA-44-6777    TCGA-44-6778 
"HGF WILD-TYPE" "HGF WILD-TYPE" "HGF WILD-TYPE" "HGF WILD-TYPE" "HGF WILD-TYPE" 
   TCGA-44-6779    TCGA-49-4486    TCGA-49-4487    TCGA-49-4488    TCGA-49-4490 
"HGF WILD-TYPE" "HGF WILD-TYPE" "HGF WILD-TYPE" "HGF WILD-TYPE" "HGF WILD-TYPE" 
   TCGA-49-4494    TCGA-49-4501    TCGA-49-4505    TCGA-49-4506    TCGA-49-4507 
"HGF WILD-TYPE" "HGF WILD-TYPE" "HGF WILD-TYPE"   "HGF MUTATED" "HGF WILD-TYPE" 
   TCGA-49-4510    TCGA-49-4512    TCGA-49-4514    TCGA-49-6742    TCGA-49-6743 
"HGF WILD-TYPE" "HGF WILD-TYPE" "HGF WILD-TYPE" "HGF WILD-TYPE" "HGF WILD-TYPE" 
   TCGA-49-6744    TCGA-49-6745    TCGA-50-5044    TCGA-50-5045    TCGA-50-5049 
"HGF WILD-TYPE" "HGF WILD-TYPE" "HGF WILD-TYPE" "HGF WILD-TYPE"   "HGF MUTATED" 
   TCGA-50-5051    TCGA-50-5055    TCGA-50-5066    TCGA-50-5068    TCGA-50-5072 
"HGF WILD-TYPE" "HGF WILD-TYPE" "HGF WILD-TYPE" "HGF WILD-TYPE" "HGF WILD-TYPE" 
   TCGA-50-5930    TCGA-50-5931    TCGA-50-5932    TCGA-50-5933    TCGA-50-5935 
"HGF WILD-TYPE" "HGF WILD-TYPE" "HGF WILD-TYPE" "HGF WILD-TYPE" "HGF WILD-TYPE" 
   TCGA-50-5936    TCGA-50-5939    TCGA-50-5941    TCGA-50-5942    TCGA-50-5944 
"HGF WILD-TYPE" "HGF WILD-TYPE" "HGF WILD-TYPE" "HGF WILD-TYPE" "HGF WILD-TYPE" 
   TCGA-50-5946    TCGA-50-6590    TCGA-50-6591    TCGA-50-6592    TCGA-50-6593 
"HGF WILD-TYPE" "HGF WILD-TYPE" "HGF WILD-TYPE" "HGF WILD-TYPE" "HGF WILD-TYPE" 
   TCGA-50-6594    TCGA-50-6595    TCGA-50-6597    TCGA-55-1592    TCGA-55-1594 
"HGF WILD-TYPE" "HGF WILD-TYPE" "HGF WILD-TYPE" "HGF WILD-TYPE" "HGF WILD-TYPE" 
   TCGA-55-1595    TCGA-55-1596    TCGA-55-5899    TCGA-55-6543    TCGA-55-6642 
"HGF WILD-TYPE" "HGF WILD-TYPE" "HGF WILD-TYPE" "HGF WILD-TYPE" "HGF WILD-TYPE" 
   TCGA-55-6712    TCGA-64-1676    TCGA-64-1677    TCGA-64-1678    TCGA-64-1680 
"HGF WILD-TYPE"   "HGF MUTATED" "HGF WILD-TYPE" "HGF WILD-TYPE" "HGF WILD-TYPE" 
   TCGA-64-5774    TCGA-64-5775    TCGA-64-5778    TCGA-64-5779    TCGA-64-5781 
"HGF WILD-TYPE" "HGF WILD-TYPE" "HGF WILD-TYPE" "HGF WILD-TYPE" "HGF WILD-TYPE" 
   TCGA-64-5815    TCGA-67-3770    TCGA-67-3771    TCGA-67-3772    TCGA-67-3773 
"HGF WILD-TYPE" "HGF WILD-TYPE" "HGF WILD-TYPE" "HGF WILD-TYPE" "HGF WILD-TYPE" 
   TCGA-67-3774    TCGA-67-6215    TCGA-67-6216    TCGA-67-6217    TCGA-71-6725 
"HGF WILD-TYPE" "HGF WILD-TYPE" "HGF WILD-TYPE" "HGF WILD-TYPE" "HGF WILD-TYPE" 
   TCGA-73-4658    TCGA-73-4659    TCGA-73-4662    TCGA-73-4666    TCGA-73-4668 
"HGF WILD-TYPE" "HGF WILD-TYPE" "HGF WILD-TYPE" "HGF WILD-TYPE" "HGF WILD-TYPE" 
   TCGA-73-4670    TCGA-73-4675    TCGA-73-4676    TCGA-73-4677    TCGA-91-6828 
"HGF WILD-TYPE" "HGF WILD-TYPE" "HGF WILD-TYPE" "HGF WILD-TYPE" "HGF WILD-TYPE" 
   TCGA-91-6829    TCGA-91-6831    TCGA-91-6835    TCGA-91-6836 
  "HGF MUTATED" "HGF WILD-TYPE" "HGF WILD-TYPE" "HGF WILD-TYPE" 
   TCGA-05-4249    TCGA-05-4250    TCGA-05-4382    TCGA-05-4384    TCGA-05-4390 
"HGF WILD-TYPE" "HGF WILD-TYPE"   "HGF MUTATED" "HGF WILD-TYPE" "HGF WILD-TYPE" 
   TCGA-05-4396    TCGA-05-4397    TCGA-05-4398    TCGA-05-4402    TCGA-05-4405 
  "HGF MUTATED" "HGF WILD-TYPE" "HGF WILD-TYPE" "HGF WILD-TYPE" "HGF WILD-TYPE" 
   TCGA-05-4415    TCGA-05-4417    TCGA-05-4418    TCGA-05-4420    TCGA-05-4424 
"HGF WILD-TYPE" "HGF WILD-TYPE" "HGF WILD-TYPE"   "HGF MUTATED"   "HGF MUTATED" 
   TCGA-05-4426    TCGA-05-4427    TCGA-05-4430    TCGA-05-4432    TCGA-05-4433 
"HGF WILD-TYPE"   "HGF MUTATED" "HGF WILD-TYPE" "HGF WILD-TYPE" "HGF WILD-TYPE" 
   TCGA-05-4434    TCGA-05-5420    TCGA-05-5423    TCGA-05-5425    TCGA-05-5429 
"HGF WILD-TYPE" "HGF WILD-TYPE" "HGF WILD-TYPE" "HGF WILD-TYPE" "HGF WILD-TYPE" 
   TCGA-05-5715    TCGA-35-3615    TCGA-35-4122    TCGA-35-4123    TCGA-35-5375 
"HGF WILD-TYPE" "HGF WILD-TYPE" "HGF WILD-TYPE" "HGF WILD-TYPE" "HGF WILD-TYPE" 
   TCGA-38-4625    TCGA-38-4626    TCGA-38-4627    TCGA-38-4628    TCGA-38-4629 
"HGF WILD-TYPE" "HGF WILD-TYPE" "HGF WILD-TYPE" "HGF WILD-TYPE" "HGF WILD-TYPE" 
   TCGA-38-4630    TCGA-38-4631    TCGA-38-4632    TCGA-38-6178    TCGA-44-2655 
"HGF WILD-TYPE" "HGF WILD-TYPE"   "HGF MUTATED" "HGF WILD-TYPE" "HGF WILD-TYPE" 
   TCGA-44-2656    TCGA-44-2657    TCGA-44-2659    TCGA-44-2661    TCGA-44-2662 
"HGF WILD-TYPE" "HGF WILD-TYPE"   "HGF MUTATED" "HGF WILD-TYPE" "HGF WILD-TYPE" 
   TCGA-44-2665    TCGA-44-2666    TCGA-44-2668    TCGA-44-3396    TCGA-44-3398 
"HGF WILD-TYPE" "HGF WILD-TYPE" "HGF WILD-TYPE" "HGF WILD-TYPE" "HGF WILD-TYPE" 
   TCGA-44-3918    TCGA-44-3919    TCGA-44-4112    TCGA-44-5643    TCGA-44-5645 
  "HGF MUTATED" "HGF WILD-TYPE"   "HGF MUTATED" "HGF WILD-TYPE" "HGF WILD-TYPE" 
   TCGA-44-6144    TCGA-44-6145    TCGA-44-6146    TCGA-44-6147    TCGA-44-6148 
"HGF WILD-TYPE" "HGF WILD-TYPE" "HGF WILD-TYPE" "HGF WILD-TYPE" "HGF WILD-TYPE" 
   TCGA-44-6774    TCGA-44-6775    TCGA-44-6776    TCGA-44-6777    TCGA-44-6778 
"HGF WILD-TYPE" "HGF WILD-TYPE" "HGF WILD-TYPE" "HGF WILD-TYPE" "HGF WILD-TYPE" 
   TCGA-44-6779    TCGA-49-4486    TCGA-49-4487    TCGA-49-4488    TCGA-49-4490 
"HGF WILD-TYPE" "HGF WILD-TYPE" "HGF WILD-TYPE" "HGF WILD-TYPE" "HGF WILD-TYPE" 
   TCGA-49-4494    TCGA-49-4501    TCGA-49-4505    TCGA-49-4506    TCGA-49-4507 
"HGF WILD-TYPE" "HGF WILD-TYPE" "HGF WILD-TYPE"   "HGF MUTATED" "HGF WILD-TYPE" 
   TCGA-49-4510    TCGA-49-4512    TCGA-49-4514    TCGA-49-6742    TCGA-49-6743 
"HGF WILD-TYPE" "HGF WILD-TYPE" "HGF WILD-TYPE" "HGF WILD-TYPE" "HGF WILD-TYPE" 
   TCGA-49-6744    TCGA-49-6745    TCGA-50-5044    TCGA-50-5045    TCGA-50-5049 
"HGF WILD-TYPE" "HGF WILD-TYPE" "HGF WILD-TYPE" "HGF WILD-TYPE"   "HGF MUTATED" 
   TCGA-50-5051    TCGA-50-5055    TCGA-50-5066    TCGA-50-5068    TCGA-50-5072 
"HGF WILD-TYPE" "HGF WILD-TYPE" "HGF WILD-TYPE" "HGF WILD-TYPE" "HGF WILD-TYPE" 
   TCGA-50-5930    TCGA-50-5931    TCGA-50-5932    TCGA-50-5933    TCGA-50-5935 
"HGF WILD-TYPE" "HGF WILD-TYPE" "HGF WILD-TYPE" "HGF WILD-TYPE" "HGF WILD-TYPE" 
   TCGA-50-5936    TCGA-50-5939    TCGA-50-5941    TCGA-50-5942    TCGA-50-5944 
"HGF WILD-TYPE" "HGF WILD-TYPE" "HGF WILD-TYPE" "HGF WILD-TYPE" "HGF WILD-TYPE" 
   TCGA-50-5946    TCGA-50-6590    TCGA-50-6591    TCGA-50-6592    TCGA-50-6593 
"HGF WILD-TYPE" "HGF WILD-TYPE" "HGF WILD-TYPE" "HGF WILD-TYPE" "HGF WILD-TYPE" 
   TCGA-50-6594    TCGA-50-6595    TCGA-50-6597    TCGA-55-1592    TCGA-55-1594 
"HGF WILD-TYPE" "HGF WILD-TYPE" "HGF WILD-TYPE" "HGF WILD-TYPE" "HGF WILD-TYPE" 
   TCGA-55-1595    TCGA-55-1596    TCGA-55-5899    TCGA-55-6543    TCGA-55-6642 
"HGF WILD-TYPE" "HGF WILD-TYPE" "HGF WILD-TYPE" "HGF WILD-TYPE" "HGF WILD-TYPE" 
   TCGA-55-6712    TCGA-64-1676    TCGA-64-1677    TCGA-64-1678    TCGA-64-1680 
"HGF WILD-TYPE"   "HGF MUTATED" "HGF WILD-TYPE" "HGF WILD-TYPE" "HGF WILD-TYPE" 
   TCGA-64-5774    TCGA-64-5775    TCGA-64-5778    TCGA-64-5779    TCGA-64-5781 
"HGF WILD-TYPE" "HGF WILD-TYPE" "HGF WILD-TYPE" "HGF WILD-TYPE" "HGF WILD-TYPE" 
   TCGA-64-5815    TCGA-67-3770    TCGA-67-3771    TCGA-67-3772    TCGA-67-3773 
"HGF WILD-TYPE" "HGF WILD-TYPE" "HGF WILD-TYPE" "HGF WILD-TYPE" "HGF WILD-TYPE" 
   TCGA-67-3774    TCGA-67-6215    TCGA-67-6216    TCGA-67-6217    TCGA-71-6725 
"HGF WILD-TYPE" "HGF WILD-TYPE" "HGF WILD-TYPE" "HGF WILD-TYPE" "HGF WILD-TYPE" 
   TCGA-73-4658    TCGA-73-4659    TCGA-73-4662    TCGA-73-4666    TCGA-73-4668 
"HGF WILD-TYPE" "HGF WILD-TYPE" "HGF WILD-TYPE" "HGF WILD-TYPE" "HGF WILD-TYPE" 
   TCGA-73-4670    TCGA-73-4675    TCGA-73-4676    TCGA-73-4677    TCGA-91-6828 
"HGF WILD-TYPE" "HGF WILD-TYPE" "HGF WILD-TYPE" "HGF WILD-TYPE" "HGF WILD-TYPE" 
   TCGA-91-6829    TCGA-91-6831    TCGA-91-6835    TCGA-91-6836 
  "HGF MUTATED" "HGF WILD-TYPE" "HGF WILD-TYPE" "HGF WILD-TYPE" 
   TCGA-05-4249    TCGA-05-4250    TCGA-05-4382    TCGA-05-4384    TCGA-05-4390 
"HGF WILD-TYPE" "HGF WILD-TYPE"   "HGF MUTATED" "HGF WILD-TYPE" "HGF WILD-TYPE" 
   TCGA-05-4396    TCGA-05-4397    TCGA-05-4398    TCGA-05-4402    TCGA-05-4405 
  "HGF MUTATED" "HGF WILD-TYPE" "HGF WILD-TYPE" "HGF WILD-TYPE" "HGF WILD-TYPE" 
   TCGA-05-4415    TCGA-05-4417    TCGA-05-4418    TCGA-05-4420    TCGA-05-4424 
"HGF WILD-TYPE" "HGF WILD-TYPE" "HGF WILD-TYPE"   "HGF MUTATED"   "HGF MUTATED" 
   TCGA-05-4426    TCGA-05-4427    TCGA-05-4430    TCGA-05-4432    TCGA-05-4433 
"HGF WILD-TYPE"   "HGF MUTATED" "HGF WILD-TYPE" "HGF WILD-TYPE" "HGF WILD-TYPE" 
   TCGA-05-4434    TCGA-05-5420    TCGA-05-5423    TCGA-05-5425    TCGA-05-5429 
"HGF WILD-TYPE" "HGF WILD-TYPE" "HGF WILD-TYPE" "HGF WILD-TYPE" "HGF WILD-TYPE" 
   TCGA-05-5715    TCGA-35-3615    TCGA-35-4122    TCGA-35-4123    TCGA-35-5375 
"HGF WILD-TYPE" "HGF WILD-TYPE" "HGF WILD-TYPE" "HGF WILD-TYPE" "HGF WILD-TYPE" 
   TCGA-38-4625    TCGA-38-4626    TCGA-38-4627    TCGA-38-4628    TCGA-38-4629 
"HGF WILD-TYPE" "HGF WILD-TYPE" "HGF WILD-TYPE" "HGF WILD-TYPE" "HGF WILD-TYPE" 
   TCGA-38-4630    TCGA-38-4631    TCGA-38-4632    TCGA-38-6178    TCGA-44-2655 
"HGF WILD-TYPE" "HGF WILD-TYPE"   "HGF MUTATED" "HGF WILD-TYPE" "HGF WILD-TYPE" 
   TCGA-44-2656    TCGA-44-2657    TCGA-44-2659    TCGA-44-2661    TCGA-44-2662 
"HGF WILD-TYPE" "HGF WILD-TYPE"   "HGF MUTATED" "HGF WILD-TYPE" "HGF WILD-TYPE" 
   TCGA-44-2665    TCGA-44-2666    TCGA-44-2668    TCGA-44-3396    TCGA-44-3398 
"HGF WILD-TYPE" "HGF WILD-TYPE" "HGF WILD-TYPE" "HGF WILD-TYPE" "HGF WILD-TYPE" 
   TCGA-44-3918    TCGA-44-3919    TCGA-44-4112    TCGA-44-5643    TCGA-44-5645 
  "HGF MUTATED" "HGF WILD-TYPE"   "HGF MUTATED" "HGF WILD-TYPE" "HGF WILD-TYPE" 
   TCGA-44-6144    TCGA-44-6145    TCGA-44-6146    TCGA-44-6147    TCGA-44-6148 
"HGF WILD-TYPE" "HGF WILD-TYPE" "HGF WILD-TYPE" "HGF WILD-TYPE" "HGF WILD-TYPE" 
   TCGA-44-6774    TCGA-44-6775    TCGA-44-6776    TCGA-44-6777    TCGA-44-6778 
"HGF WILD-TYPE" "HGF WILD-TYPE" "HGF WILD-TYPE" "HGF WILD-TYPE" "HGF WILD-TYPE" 
   TCGA-44-6779    TCGA-49-4486    TCGA-49-4487    TCGA-49-4488    TCGA-49-4490 
"HGF WILD-TYPE" "HGF WILD-TYPE" "HGF WILD-TYPE" "HGF WILD-TYPE" "HGF WILD-TYPE" 
   TCGA-49-4494    TCGA-49-4501    TCGA-49-4505    TCGA-49-4506    TCGA-49-4507 
"HGF WILD-TYPE" "HGF WILD-TYPE" "HGF WILD-TYPE"   "HGF MUTATED" "HGF WILD-TYPE" 
   TCGA-49-4510    TCGA-49-4512    TCGA-49-4514    TCGA-49-6742    TCGA-49-6743 
"HGF WILD-TYPE" "HGF WILD-TYPE" "HGF WILD-TYPE" "HGF WILD-TYPE" "HGF WILD-TYPE" 
   TCGA-49-6744    TCGA-49-6745    TCGA-50-5044    TCGA-50-5045    TCGA-50-5049 
"HGF WILD-TYPE" "HGF WILD-TYPE" "HGF WILD-TYPE" "HGF WILD-TYPE"   "HGF MUTATED" 
   TCGA-50-5051    TCGA-50-5055    TCGA-50-5066    TCGA-50-5068    TCGA-50-5072 
"HGF WILD-TYPE" "HGF WILD-TYPE" "HGF WILD-TYPE" "HGF WILD-TYPE" "HGF WILD-TYPE" 
   TCGA-50-5930    TCGA-50-5931    TCGA-50-5932    TCGA-50-5933    TCGA-50-5935 
"HGF WILD-TYPE" "HGF WILD-TYPE" "HGF WILD-TYPE" "HGF WILD-TYPE" "HGF WILD-TYPE" 
   TCGA-50-5936    TCGA-50-5939    TCGA-50-5941    TCGA-50-5942    TCGA-50-5944 
"HGF WILD-TYPE" "HGF WILD-TYPE" "HGF WILD-TYPE" "HGF WILD-TYPE" "HGF WILD-TYPE" 
   TCGA-50-5946    TCGA-50-6590    TCGA-50-6591    TCGA-50-6592    TCGA-50-6593 
"HGF WILD-TYPE" "HGF WILD-TYPE" "HGF WILD-TYPE" "HGF WILD-TYPE" "HGF WILD-TYPE" 
   TCGA-50-6594    TCGA-50-6595    TCGA-50-6597    TCGA-55-1592    TCGA-55-1594 
"HGF WILD-TYPE" "HGF WILD-TYPE" "HGF WILD-TYPE" "HGF WILD-TYPE" "HGF WILD-TYPE" 
   TCGA-55-1595    TCGA-55-1596    TCGA-55-5899    TCGA-55-6543    TCGA-55-6642 
"HGF WILD-TYPE" "HGF WILD-TYPE" "HGF WILD-TYPE" "HGF WILD-TYPE" "HGF WILD-TYPE" 
   TCGA-55-6712    TCGA-64-1676    TCGA-64-1677    TCGA-64-1678    TCGA-64-1680 
"HGF WILD-TYPE"   "HGF MUTATED" "HGF WILD-TYPE" "HGF WILD-TYPE" "HGF WILD-TYPE" 
   TCGA-64-5774    TCGA-64-5775    TCGA-64-5778    TCGA-64-5779    TCGA-64-5781 
"HGF WILD-TYPE" "HGF WILD-TYPE" "HGF WILD-TYPE" "HGF WILD-TYPE" "HGF WILD-TYPE" 
   TCGA-64-5815    TCGA-67-3770    TCGA-67-3771    TCGA-67-3772    TCGA-67-3773 
"HGF WILD-TYPE" "HGF WILD-TYPE" "HGF WILD-TYPE" "HGF WILD-TYPE" "HGF WILD-TYPE" 
   TCGA-67-3774    TCGA-67-6215    TCGA-67-6216    TCGA-67-6217    TCGA-71-6725 
"HGF WILD-TYPE" "HGF WILD-TYPE" "HGF WILD-TYPE" "HGF WILD-TYPE" "HGF WILD-TYPE" 
   TCGA-73-4658    TCGA-73-4659    TCGA-73-4662    TCGA-73-4666    TCGA-73-4668 
"HGF WILD-TYPE" "HGF WILD-TYPE" "HGF WILD-TYPE" "HGF WILD-TYPE" "HGF WILD-TYPE" 
   TCGA-73-4670    TCGA-73-4675    TCGA-73-4676    TCGA-73-4677    TCGA-91-6828 
"HGF WILD-TYPE" "HGF WILD-TYPE" "HGF WILD-TYPE" "HGF WILD-TYPE" "HGF WILD-TYPE" 
   TCGA-91-6829    TCGA-91-6831    TCGA-91-6835    TCGA-91-6836 
  "HGF MUTATED" "HGF WILD-TYPE" "HGF WILD-TYPE" "HGF WILD-TYPE" 
[1] "hr=" "1.7"
D52V2, continuous
D52V3, binary
[1] "tbl2"
               cls
clus            [,1] [,2]
  HGF MUTATED      5   11
  HGF WILD-TYPE   88   68
        clus
vv       HGF MUTATED HGF WILD-TYPE
  FEMALE           5            88
  MALE            11            68
D52V4, continuous
D52V5, multiclass
D52V6, multiclass
    clus
vv   HGF MUTATED HGF WILD-TYPE
  T1           4            37
  T2          10            98
  T3           1            13
  T4           1             7
D52V7, multiclass
       clus
vv      HGF MUTATED HGF WILD-TYPE
  N0             10            85
  N1              6            31
  N2+N3           0            35
D52V8, multiclass
    clus
vv   HGF MUTATED HGF WILD-TYPE
  M0          14           123
  M1           1             8
  MX           1            21
D52V9, multiclass
     clus
vv    HGF MUTATED HGF WILD-TYPE
  I             9            79
  II            5            28
  III           1            38
  IV            1             8
D52V10, binary
[1] "tbl2"
               cls
clus            [,1] [,2]
  HGF MUTATED      1   15
  HGF WILD-TYPE   15  141
     clus
vv    HGF MUTATED HGF WILD-TYPE
  NO            1            15
  YES          15           141
D52V11, continuous
D52V12, continuous
D52V13, multiclass
                                             clus
vv                                            HGF MUTATED HGF WILD-TYPE
  CURRENT REFORMED SMOKER FOR < OR = 15 YEARS           8            54
  CURRENT REFORMED SMOKER FOR > 15 YEARS                4            42
  CURRENT SMOKER                                        3            25
  LIFELONG NON-SMOKER                                   0            24
D52V14, continuous

Clustering(53) Variable = OR4S2 MUTATION ANALYSIS
D53V1, survival
                 sevent
clus2              0  1
  OR4S2 MUTATED    4  1
  OR4S2 WILD-TYPE 95 49
  OR4S2 MUTATED OR4S2 WILD-TYPE 
              5             144 
  OR4S2 MUTATED OR4S2 WILD-TYPE 
              1              49 
$`OR4S2 MUTATED`
TCGA-05-5423 TCGA-38-4629 TCGA-49-4514 TCGA-64-5781 TCGA-67-3771 
        4.96        28.37        43.20        39.52         1.97 

$`OR4S2 WILD-TYPE`
TCGA-05-4249 TCGA-05-4250 TCGA-05-4382 TCGA-05-4384 TCGA-05-4390 TCGA-05-4396 
       38.07         3.98        19.92        14.01        37.02         9.96 
TCGA-05-4397 TCGA-05-4398 TCGA-05-4402 TCGA-05-4405 TCGA-05-4415 TCGA-05-4417 
       24.03        47.05         8.02        20.05         2.96        14.93 
TCGA-05-4418 TCGA-05-4420 TCGA-05-4424 TCGA-05-4426 TCGA-05-4427 TCGA-05-4430 
        8.98        29.95        30.02        26.01        26.01        25.02 
TCGA-05-4432 TCGA-05-4433 TCGA-05-4434 TCGA-05-5420 TCGA-05-5425 TCGA-05-5429 
       25.02        24.00        15.02         1.02         2.96         0.99 
TCGA-05-5715 TCGA-35-3615 TCGA-35-4122 TCGA-35-4123 TCGA-35-5375 TCGA-38-4625 
        2.04         0.46         7.36         5.95         8.68        47.61 
TCGA-38-4626 TCGA-38-4627 TCGA-38-4628 TCGA-38-4630 TCGA-38-4631 TCGA-38-4632 
       85.32        37.71        49.02        35.28        11.64        44.61 
TCGA-38-6178 TCGA-44-2655 TCGA-44-2656 TCGA-44-2657 TCGA-44-2659 TCGA-44-2661 
        5.19        18.87        19.10        13.15        17.39         3.39 
TCGA-44-2662 TCGA-44-2665 TCGA-44-2666 TCGA-44-2668 TCGA-44-3396 TCGA-44-3398 
       15.78        13.15         3.19         8.09        10.22         8.32 
TCGA-44-3918 TCGA-44-3919 TCGA-44-4112 TCGA-44-5643 TCGA-44-5645 TCGA-44-6144 
        6.44         6.21         4.60         3.48         6.84         0.30 
TCGA-44-6145 TCGA-44-6146 TCGA-44-6147 TCGA-44-6148 TCGA-44-6774 TCGA-44-6775 
        3.35         9.93         7.76         3.12         5.42         2.70 
TCGA-44-6776 TCGA-44-6777 TCGA-44-6778 TCGA-44-6779 TCGA-49-4486 TCGA-49-4487 
       63.72        32.45        36.49        16.41        76.21        28.11 
TCGA-49-4488 TCGA-49-4490 TCGA-49-4494 TCGA-49-4501 TCGA-49-4505 TCGA-49-4506 
       28.57        12.66        35.54        46.72        14.07        32.84 
TCGA-49-4507 TCGA-49-4510 TCGA-49-4512 TCGA-49-6742 TCGA-49-6743 TCGA-49-6744 
        8.81        29.46        29.75        15.02        12.13        12.99 
TCGA-49-6745 TCGA-50-5044 TCGA-50-5045 TCGA-50-5049 TCGA-50-5051 TCGA-50-5055 
        4.93        20.48        71.47        48.82        14.96        25.81 
TCGA-50-5066 TCGA-50-5068 TCGA-50-5072 TCGA-50-5930 TCGA-50-5931 TCGA-50-5932 
        9.76        49.28         8.05         9.27         8.78        35.87 
TCGA-50-5933 TCGA-50-5935 TCGA-50-5936 TCGA-50-5939 TCGA-50-5941 TCGA-50-5942 
       77.88        21.47         8.45        15.12         9.37         4.44 
TCGA-50-5944 TCGA-50-5946 TCGA-50-6590 TCGA-50-6591 TCGA-50-6592 TCGA-50-6593 
       12.26        11.47        42.31         3.88        25.51        11.05 
TCGA-50-6594 TCGA-50-6595 TCGA-50-6597 TCGA-55-1592 TCGA-55-1594 TCGA-55-1595 
       12.16         6.21        33.37        23.05        38.73        48.62 
TCGA-55-1596 TCGA-55-5899 TCGA-55-6543 TCGA-55-6642 TCGA-55-6712 TCGA-64-1676 
       45.17         2.86         0.07        32.61         0.79        56.81 
TCGA-64-1677 TCGA-64-1678 TCGA-64-1680 TCGA-64-5774 TCGA-64-5775 TCGA-64-5778 
       20.65        39.09        37.02        83.84         0.10        30.44 
TCGA-64-5779 TCGA-64-5815 TCGA-67-3770 TCGA-67-3772 TCGA-67-3773 TCGA-67-3774 
       16.67         7.33         0.99         0.59         2.04         0.59 
TCGA-67-6215 TCGA-67-6216 TCGA-67-6217 TCGA-71-6725 TCGA-73-4658 TCGA-73-4659 
        0.89         0.69        13.87         2.01        52.57        23.38 
TCGA-73-4662 TCGA-73-4666 TCGA-73-4668 TCGA-73-4670 TCGA-73-4675 TCGA-73-4676 
       29.95        20.28        15.35         0.46         1.32         4.01 
TCGA-73-4677 TCGA-91-6828 TCGA-91-6829 TCGA-91-6831 TCGA-91-6835 TCGA-91-6836 
        1.25         1.22        41.33         1.28         1.15         0.36 

  OR4S2 MUTATED OR4S2 WILD-TYPE 
           1.97            0.07 
  OR4S2 MUTATED OR4S2 WILD-TYPE 
          43.20           85.32 
  OR4S2 MUTATED OR4S2 WILD-TYPE 
          28.37           13.51 
[1] "2.0 - 43.2 (28.4)" "0.1 - 85.3 (13.5)"
     TCGA-05-4249      TCGA-05-4250      TCGA-05-4382      TCGA-05-4384 
"OR4S2 WILD-TYPE" "OR4S2 WILD-TYPE" "OR4S2 WILD-TYPE" "OR4S2 WILD-TYPE" 
     TCGA-05-4390      TCGA-05-4396      TCGA-05-4397      TCGA-05-4398 
"OR4S2 WILD-TYPE" "OR4S2 WILD-TYPE" "OR4S2 WILD-TYPE" "OR4S2 WILD-TYPE" 
     TCGA-05-4402      TCGA-05-4405      TCGA-05-4415      TCGA-05-4417 
"OR4S2 WILD-TYPE" "OR4S2 WILD-TYPE" "OR4S2 WILD-TYPE" "OR4S2 WILD-TYPE" 
     TCGA-05-4418      TCGA-05-4420      TCGA-05-4424      TCGA-05-4426 
"OR4S2 WILD-TYPE" "OR4S2 WILD-TYPE" "OR4S2 WILD-TYPE" "OR4S2 WILD-TYPE" 
     TCGA-05-4427      TCGA-05-4430      TCGA-05-4432      TCGA-05-4433 
"OR4S2 WILD-TYPE" "OR4S2 WILD-TYPE" "OR4S2 WILD-TYPE" "OR4S2 WILD-TYPE" 
     TCGA-05-4434      TCGA-05-5420      TCGA-05-5423      TCGA-05-5425 
"OR4S2 WILD-TYPE" "OR4S2 WILD-TYPE"   "OR4S2 MUTATED" "OR4S2 WILD-TYPE" 
     TCGA-05-5429      TCGA-05-5715      TCGA-35-3615      TCGA-35-4122 
"OR4S2 WILD-TYPE" "OR4S2 WILD-TYPE" "OR4S2 WILD-TYPE" "OR4S2 WILD-TYPE" 
     TCGA-35-4123      TCGA-35-5375      TCGA-38-4625      TCGA-38-4626 
"OR4S2 WILD-TYPE" "OR4S2 WILD-TYPE" "OR4S2 WILD-TYPE" "OR4S2 WILD-TYPE" 
     TCGA-38-4627      TCGA-38-4628      TCGA-38-4629      TCGA-38-4630 
"OR4S2 WILD-TYPE" "OR4S2 WILD-TYPE"   "OR4S2 MUTATED" "OR4S2 WILD-TYPE" 
     TCGA-38-4631      TCGA-38-4632      TCGA-38-6178      TCGA-44-2655 
"OR4S2 WILD-TYPE" "OR4S2 WILD-TYPE" "OR4S2 WILD-TYPE" "OR4S2 WILD-TYPE" 
     TCGA-44-2656      TCGA-44-2657      TCGA-44-2659      TCGA-44-2661 
"OR4S2 WILD-TYPE" "OR4S2 WILD-TYPE" "OR4S2 WILD-TYPE" "OR4S2 WILD-TYPE" 
     TCGA-44-2662      TCGA-44-2665      TCGA-44-2666      TCGA-44-2668 
"OR4S2 WILD-TYPE" "OR4S2 WILD-TYPE" "OR4S2 WILD-TYPE" "OR4S2 WILD-TYPE" 
     TCGA-44-3396      TCGA-44-3398      TCGA-44-3918      TCGA-44-3919 
"OR4S2 WILD-TYPE" "OR4S2 WILD-TYPE" "OR4S2 WILD-TYPE" "OR4S2 WILD-TYPE" 
     TCGA-44-4112      TCGA-44-5643      TCGA-44-5645      TCGA-44-6144 
"OR4S2 WILD-TYPE" "OR4S2 WILD-TYPE" "OR4S2 WILD-TYPE" "OR4S2 WILD-TYPE" 
     TCGA-44-6145      TCGA-44-6146      TCGA-44-6147      TCGA-44-6148 
"OR4S2 WILD-TYPE" "OR4S2 WILD-TYPE" "OR4S2 WILD-TYPE" "OR4S2 WILD-TYPE" 
     TCGA-44-6774      TCGA-44-6775      TCGA-44-6776      TCGA-44-6777 
"OR4S2 WILD-TYPE" "OR4S2 WILD-TYPE" "OR4S2 WILD-TYPE" "OR4S2 WILD-TYPE" 
     TCGA-44-6778      TCGA-44-6779      TCGA-49-4486      TCGA-49-4487 
"OR4S2 WILD-TYPE" "OR4S2 WILD-TYPE" "OR4S2 WILD-TYPE" "OR4S2 WILD-TYPE" 
     TCGA-49-4488      TCGA-49-4490      TCGA-49-4494      TCGA-49-4501 
"OR4S2 WILD-TYPE" "OR4S2 WILD-TYPE" "OR4S2 WILD-TYPE" "OR4S2 WILD-TYPE" 
     TCGA-49-4505      TCGA-49-4506      TCGA-49-4507      TCGA-49-4510 
"OR4S2 WILD-TYPE" "OR4S2 WILD-TYPE" "OR4S2 WILD-TYPE" "OR4S2 WILD-TYPE" 
     TCGA-49-4512      TCGA-49-4514      TCGA-49-6742      TCGA-49-6743 
"OR4S2 WILD-TYPE"   "OR4S2 MUTATED" "OR4S2 WILD-TYPE" "OR4S2 WILD-TYPE" 
     TCGA-49-6744      TCGA-49-6745      TCGA-50-5044      TCGA-50-5045 
"OR4S2 WILD-TYPE" "OR4S2 WILD-TYPE" "OR4S2 WILD-TYPE" "OR4S2 WILD-TYPE" 
     TCGA-50-5049      TCGA-50-5051      TCGA-50-5055      TCGA-50-5066 
"OR4S2 WILD-TYPE" "OR4S2 WILD-TYPE" "OR4S2 WILD-TYPE" "OR4S2 WILD-TYPE" 
     TCGA-50-5068      TCGA-50-5072      TCGA-50-5930      TCGA-50-5931 
"OR4S2 WILD-TYPE" "OR4S2 WILD-TYPE" "OR4S2 WILD-TYPE" "OR4S2 WILD-TYPE" 
     TCGA-50-5932      TCGA-50-5933      TCGA-50-5935      TCGA-50-5936 
"OR4S2 WILD-TYPE" "OR4S2 WILD-TYPE" "OR4S2 WILD-TYPE" "OR4S2 WILD-TYPE" 
     TCGA-50-5939      TCGA-50-5941      TCGA-50-5942      TCGA-50-5944 
"OR4S2 WILD-TYPE" "OR4S2 WILD-TYPE" "OR4S2 WILD-TYPE" "OR4S2 WILD-TYPE" 
     TCGA-50-5946      TCGA-50-6590      TCGA-50-6591      TCGA-50-6592 
"OR4S2 WILD-TYPE" "OR4S2 WILD-TYPE" "OR4S2 WILD-TYPE" "OR4S2 WILD-TYPE" 
     TCGA-50-6593      TCGA-50-6594      TCGA-50-6595      TCGA-50-6597 
"OR4S2 WILD-TYPE" "OR4S2 WILD-TYPE" "OR4S2 WILD-TYPE" "OR4S2 WILD-TYPE" 
     TCGA-55-1592      TCGA-55-1594      TCGA-55-1595      TCGA-55-1596 
"OR4S2 WILD-TYPE" "OR4S2 WILD-TYPE" "OR4S2 WILD-TYPE" "OR4S2 WILD-TYPE" 
     TCGA-55-5899      TCGA-55-6543      TCGA-55-6642      TCGA-55-6712 
"OR4S2 WILD-TYPE" "OR4S2 WILD-TYPE" "OR4S2 WILD-TYPE" "OR4S2 WILD-TYPE" 
     TCGA-64-1676      TCGA-64-1677      TCGA-64-1678      TCGA-64-1680 
"OR4S2 WILD-TYPE" "OR4S2 WILD-TYPE" "OR4S2 WILD-TYPE" "OR4S2 WILD-TYPE" 
     TCGA-64-5774      TCGA-64-5775      TCGA-64-5778      TCGA-64-5779 
"OR4S2 WILD-TYPE" "OR4S2 WILD-TYPE" "OR4S2 WILD-TYPE" "OR4S2 WILD-TYPE" 
     TCGA-64-5781      TCGA-64-5815      TCGA-67-3770      TCGA-67-3771 
  "OR4S2 MUTATED" "OR4S2 WILD-TYPE" "OR4S2 WILD-TYPE"   "OR4S2 MUTATED" 
     TCGA-67-3772      TCGA-67-3773      TCGA-67-3774      TCGA-67-6215 
"OR4S2 WILD-TYPE" "OR4S2 WILD-TYPE" "OR4S2 WILD-TYPE" "OR4S2 WILD-TYPE" 
     TCGA-67-6216      TCGA-67-6217      TCGA-71-6725      TCGA-73-4658 
"OR4S2 WILD-TYPE" "OR4S2 WILD-TYPE" "OR4S2 WILD-TYPE" "OR4S2 WILD-TYPE" 
     TCGA-73-4659      TCGA-73-4662      TCGA-73-4666      TCGA-73-4668 
"OR4S2 WILD-TYPE" "OR4S2 WILD-TYPE" "OR4S2 WILD-TYPE" "OR4S2 WILD-TYPE" 
     TCGA-73-4670      TCGA-73-4675      TCGA-73-4676      TCGA-73-4677 
"OR4S2 WILD-TYPE" "OR4S2 WILD-TYPE" "OR4S2 WILD-TYPE" "OR4S2 WILD-TYPE" 
     TCGA-91-6828      TCGA-91-6829      TCGA-91-6831      TCGA-91-6835 
"OR4S2 WILD-TYPE" "OR4S2 WILD-TYPE" "OR4S2 WILD-TYPE" "OR4S2 WILD-TYPE" 
     TCGA-91-6836 
"OR4S2 WILD-TYPE" 
     TCGA-05-4249      TCGA-05-4250      TCGA-05-4382      TCGA-05-4384 
"OR4S2 WILD-TYPE" "OR4S2 WILD-TYPE" "OR4S2 WILD-TYPE" "OR4S2 WILD-TYPE" 
     TCGA-05-4390      TCGA-05-4396      TCGA-05-4397      TCGA-05-4398 
"OR4S2 WILD-TYPE" "OR4S2 WILD-TYPE" "OR4S2 WILD-TYPE" "OR4S2 WILD-TYPE" 
     TCGA-05-4402      TCGA-05-4405      TCGA-05-4415      TCGA-05-4417 
"OR4S2 WILD-TYPE" "OR4S2 WILD-TYPE" "OR4S2 WILD-TYPE" "OR4S2 WILD-TYPE" 
     TCGA-05-4418      TCGA-05-4420      TCGA-05-4424      TCGA-05-4426 
"OR4S2 WILD-TYPE" "OR4S2 WILD-TYPE" "OR4S2 WILD-TYPE" "OR4S2 WILD-TYPE" 
     TCGA-05-4427      TCGA-05-4430      TCGA-05-4432      TCGA-05-4433 
"OR4S2 WILD-TYPE" "OR4S2 WILD-TYPE" "OR4S2 WILD-TYPE" "OR4S2 WILD-TYPE" 
     TCGA-05-4434      TCGA-05-5420      TCGA-05-5423      TCGA-05-5425 
"OR4S2 WILD-TYPE" "OR4S2 WILD-TYPE"   "OR4S2 MUTATED" "OR4S2 WILD-TYPE" 
     TCGA-05-5429      TCGA-05-5715      TCGA-35-3615      TCGA-35-4122 
"OR4S2 WILD-TYPE" "OR4S2 WILD-TYPE" "OR4S2 WILD-TYPE" "OR4S2 WILD-TYPE" 
     TCGA-35-4123      TCGA-35-5375      TCGA-38-4625      TCGA-38-4626 
"OR4S2 WILD-TYPE" "OR4S2 WILD-TYPE" "OR4S2 WILD-TYPE" "OR4S2 WILD-TYPE" 
     TCGA-38-4627      TCGA-38-4628      TCGA-38-4629      TCGA-38-4630 
"OR4S2 WILD-TYPE" "OR4S2 WILD-TYPE"   "OR4S2 MUTATED" "OR4S2 WILD-TYPE" 
     TCGA-38-4631      TCGA-38-4632      TCGA-38-6178      TCGA-44-2655 
"OR4S2 WILD-TYPE" "OR4S2 WILD-TYPE" "OR4S2 WILD-TYPE" "OR4S2 WILD-TYPE" 
     TCGA-44-2656      TCGA-44-2657      TCGA-44-2659      TCGA-44-2661 
"OR4S2 WILD-TYPE" "OR4S2 WILD-TYPE" "OR4S2 WILD-TYPE" "OR4S2 WILD-TYPE" 
     TCGA-44-2662      TCGA-44-2665      TCGA-44-2666      TCGA-44-2668 
"OR4S2 WILD-TYPE" "OR4S2 WILD-TYPE" "OR4S2 WILD-TYPE" "OR4S2 WILD-TYPE" 
     TCGA-44-3396      TCGA-44-3398      TCGA-44-3918      TCGA-44-3919 
"OR4S2 WILD-TYPE" "OR4S2 WILD-TYPE" "OR4S2 WILD-TYPE" "OR4S2 WILD-TYPE" 
     TCGA-44-4112      TCGA-44-5643      TCGA-44-5645      TCGA-44-6144 
"OR4S2 WILD-TYPE" "OR4S2 WILD-TYPE" "OR4S2 WILD-TYPE" "OR4S2 WILD-TYPE" 
     TCGA-44-6145      TCGA-44-6146      TCGA-44-6147      TCGA-44-6148 
"OR4S2 WILD-TYPE" "OR4S2 WILD-TYPE" "OR4S2 WILD-TYPE" "OR4S2 WILD-TYPE" 
     TCGA-44-6774      TCGA-44-6775      TCGA-44-6776      TCGA-44-6777 
"OR4S2 WILD-TYPE" "OR4S2 WILD-TYPE" "OR4S2 WILD-TYPE" "OR4S2 WILD-TYPE" 
     TCGA-44-6778      TCGA-44-6779      TCGA-49-4486      TCGA-49-4487 
"OR4S2 WILD-TYPE" "OR4S2 WILD-TYPE" "OR4S2 WILD-TYPE" "OR4S2 WILD-TYPE" 
     TCGA-49-4488      TCGA-49-4490      TCGA-49-4494      TCGA-49-4501 
"OR4S2 WILD-TYPE" "OR4S2 WILD-TYPE" "OR4S2 WILD-TYPE" "OR4S2 WILD-TYPE" 
     TCGA-49-4505      TCGA-49-4506      TCGA-49-4507      TCGA-49-4510 
"OR4S2 WILD-TYPE" "OR4S2 WILD-TYPE" "OR4S2 WILD-TYPE" "OR4S2 WILD-TYPE" 
     TCGA-49-4512      TCGA-49-4514      TCGA-49-6742      TCGA-49-6743 
"OR4S2 WILD-TYPE"   "OR4S2 MUTATED" "OR4S2 WILD-TYPE" "OR4S2 WILD-TYPE" 
     TCGA-49-6744      TCGA-49-6745      TCGA-50-5044      TCGA-50-5045 
"OR4S2 WILD-TYPE" "OR4S2 WILD-TYPE" "OR4S2 WILD-TYPE" "OR4S2 WILD-TYPE" 
     TCGA-50-5049      TCGA-50-5051      TCGA-50-5055      TCGA-50-5066 
"OR4S2 WILD-TYPE" "OR4S2 WILD-TYPE" "OR4S2 WILD-TYPE" "OR4S2 WILD-TYPE" 
     TCGA-50-5068      TCGA-50-5072      TCGA-50-5930      TCGA-50-5931 
"OR4S2 WILD-TYPE" "OR4S2 WILD-TYPE" "OR4S2 WILD-TYPE" "OR4S2 WILD-TYPE" 
     TCGA-50-5932      TCGA-50-5933      TCGA-50-5935      TCGA-50-5936 
"OR4S2 WILD-TYPE" "OR4S2 WILD-TYPE" "OR4S2 WILD-TYPE" "OR4S2 WILD-TYPE" 
     TCGA-50-5939      TCGA-50-5941      TCGA-50-5942      TCGA-50-5944 
"OR4S2 WILD-TYPE" "OR4S2 WILD-TYPE" "OR4S2 WILD-TYPE" "OR4S2 WILD-TYPE" 
     TCGA-50-5946      TCGA-50-6590      TCGA-50-6591      TCGA-50-6592 
"OR4S2 WILD-TYPE" "OR4S2 WILD-TYPE" "OR4S2 WILD-TYPE" "OR4S2 WILD-TYPE" 
     TCGA-50-6593      TCGA-50-6594      TCGA-50-6595      TCGA-50-6597 
"OR4S2 WILD-TYPE" "OR4S2 WILD-TYPE" "OR4S2 WILD-TYPE" "OR4S2 WILD-TYPE" 
     TCGA-55-1592      TCGA-55-1594      TCGA-55-1595      TCGA-55-1596 
"OR4S2 WILD-TYPE" "OR4S2 WILD-TYPE" "OR4S2 WILD-TYPE" "OR4S2 WILD-TYPE" 
     TCGA-55-5899      TCGA-55-6543      TCGA-55-6642      TCGA-55-6712 
"OR4S2 WILD-TYPE" "OR4S2 WILD-TYPE" "OR4S2 WILD-TYPE" "OR4S2 WILD-TYPE" 
     TCGA-64-1676      TCGA-64-1677      TCGA-64-1678      TCGA-64-1680 
"OR4S2 WILD-TYPE" "OR4S2 WILD-TYPE" "OR4S2 WILD-TYPE" "OR4S2 WILD-TYPE" 
     TCGA-64-5774      TCGA-64-5775      TCGA-64-5778      TCGA-64-5779 
"OR4S2 WILD-TYPE" "OR4S2 WILD-TYPE" "OR4S2 WILD-TYPE" "OR4S2 WILD-TYPE" 
     TCGA-64-5781      TCGA-64-5815      TCGA-67-3770      TCGA-67-3771 
  "OR4S2 MUTATED" "OR4S2 WILD-TYPE" "OR4S2 WILD-TYPE"   "OR4S2 MUTATED" 
     TCGA-67-3772      TCGA-67-3773      TCGA-67-3774      TCGA-67-6215 
"OR4S2 WILD-TYPE" "OR4S2 WILD-TYPE" "OR4S2 WILD-TYPE" "OR4S2 WILD-TYPE" 
     TCGA-67-6216      TCGA-67-6217      TCGA-71-6725      TCGA-73-4658 
"OR4S2 WILD-TYPE" "OR4S2 WILD-TYPE" "OR4S2 WILD-TYPE" "OR4S2 WILD-TYPE" 
     TCGA-73-4659      TCGA-73-4662      TCGA-73-4666      TCGA-73-4668 
"OR4S2 WILD-TYPE" "OR4S2 WILD-TYPE" "OR4S2 WILD-TYPE" "OR4S2 WILD-TYPE" 
     TCGA-73-4670      TCGA-73-4675      TCGA-73-4676      TCGA-73-4677 
"OR4S2 WILD-TYPE" "OR4S2 WILD-TYPE" "OR4S2 WILD-TYPE" "OR4S2 WILD-TYPE" 
     TCGA-91-6828      TCGA-91-6829      TCGA-91-6831      TCGA-91-6835 
"OR4S2 WILD-TYPE" "OR4S2 WILD-TYPE" "OR4S2 WILD-TYPE" "OR4S2 WILD-TYPE" 
     TCGA-91-6836 
"OR4S2 WILD-TYPE" 
     TCGA-05-4249      TCGA-05-4250      TCGA-05-4382      TCGA-05-4384 
"OR4S2 WILD-TYPE" "OR4S2 WILD-TYPE" "OR4S2 WILD-TYPE" "OR4S2 WILD-TYPE" 
     TCGA-05-4390      TCGA-05-4396      TCGA-05-4397      TCGA-05-4398 
"OR4S2 WILD-TYPE" "OR4S2 WILD-TYPE" "OR4S2 WILD-TYPE" "OR4S2 WILD-TYPE" 
     TCGA-05-4402      TCGA-05-4405      TCGA-05-4415      TCGA-05-4417 
"OR4S2 WILD-TYPE" "OR4S2 WILD-TYPE" "OR4S2 WILD-TYPE" "OR4S2 WILD-TYPE" 
     TCGA-05-4418      TCGA-05-4420      TCGA-05-4424      TCGA-05-4426 
"OR4S2 WILD-TYPE" "OR4S2 WILD-TYPE" "OR4S2 WILD-TYPE" "OR4S2 WILD-TYPE" 
     TCGA-05-4427      TCGA-05-4430      TCGA-05-4432      TCGA-05-4433 
"OR4S2 WILD-TYPE" "OR4S2 WILD-TYPE" "OR4S2 WILD-TYPE" "OR4S2 WILD-TYPE" 
     TCGA-05-4434      TCGA-05-5420      TCGA-05-5423      TCGA-05-5425 
"OR4S2 WILD-TYPE" "OR4S2 WILD-TYPE"   "OR4S2 MUTATED" "OR4S2 WILD-TYPE" 
     TCGA-05-5429      TCGA-05-5715      TCGA-35-3615      TCGA-35-4122 
"OR4S2 WILD-TYPE" "OR4S2 WILD-TYPE" "OR4S2 WILD-TYPE" "OR4S2 WILD-TYPE" 
     TCGA-35-4123      TCGA-35-5375      TCGA-38-4625      TCGA-38-4626 
"OR4S2 WILD-TYPE" "OR4S2 WILD-TYPE" "OR4S2 WILD-TYPE" "OR4S2 WILD-TYPE" 
     TCGA-38-4627      TCGA-38-4628      TCGA-38-4629      TCGA-38-4630 
"OR4S2 WILD-TYPE" "OR4S2 WILD-TYPE"   "OR4S2 MUTATED" "OR4S2 WILD-TYPE" 
     TCGA-38-4631      TCGA-38-4632      TCGA-38-6178      TCGA-44-2655 
"OR4S2 WILD-TYPE" "OR4S2 WILD-TYPE" "OR4S2 WILD-TYPE" "OR4S2 WILD-TYPE" 
     TCGA-44-2656      TCGA-44-2657      TCGA-44-2659      TCGA-44-2661 
"OR4S2 WILD-TYPE" "OR4S2 WILD-TYPE" "OR4S2 WILD-TYPE" "OR4S2 WILD-TYPE" 
     TCGA-44-2662      TCGA-44-2665      TCGA-44-2666      TCGA-44-2668 
"OR4S2 WILD-TYPE" "OR4S2 WILD-TYPE" "OR4S2 WILD-TYPE" "OR4S2 WILD-TYPE" 
     TCGA-44-3396      TCGA-44-3398      TCGA-44-3918      TCGA-44-3919 
"OR4S2 WILD-TYPE" "OR4S2 WILD-TYPE" "OR4S2 WILD-TYPE" "OR4S2 WILD-TYPE" 
     TCGA-44-4112      TCGA-44-5643      TCGA-44-5645      TCGA-44-6144 
"OR4S2 WILD-TYPE" "OR4S2 WILD-TYPE" "OR4S2 WILD-TYPE" "OR4S2 WILD-TYPE" 
     TCGA-44-6145      TCGA-44-6146      TCGA-44-6147      TCGA-44-6148 
"OR4S2 WILD-TYPE" "OR4S2 WILD-TYPE" "OR4S2 WILD-TYPE" "OR4S2 WILD-TYPE" 
     TCGA-44-6774      TCGA-44-6775      TCGA-44-6776      TCGA-44-6777 
"OR4S2 WILD-TYPE" "OR4S2 WILD-TYPE" "OR4S2 WILD-TYPE" "OR4S2 WILD-TYPE" 
     TCGA-44-6778      TCGA-44-6779      TCGA-49-4486      TCGA-49-4487 
"OR4S2 WILD-TYPE" "OR4S2 WILD-TYPE" "OR4S2 WILD-TYPE" "OR4S2 WILD-TYPE" 
     TCGA-49-4488      TCGA-49-4490      TCGA-49-4494      TCGA-49-4501 
"OR4S2 WILD-TYPE" "OR4S2 WILD-TYPE" "OR4S2 WILD-TYPE" "OR4S2 WILD-TYPE" 
     TCGA-49-4505      TCGA-49-4506      TCGA-49-4507      TCGA-49-4510 
"OR4S2 WILD-TYPE" "OR4S2 WILD-TYPE" "OR4S2 WILD-TYPE" "OR4S2 WILD-TYPE" 
     TCGA-49-4512      TCGA-49-4514      TCGA-49-6742      TCGA-49-6743 
"OR4S2 WILD-TYPE"   "OR4S2 MUTATED" "OR4S2 WILD-TYPE" "OR4S2 WILD-TYPE" 
     TCGA-49-6744      TCGA-49-6745      TCGA-50-5044      TCGA-50-5045 
"OR4S2 WILD-TYPE" "OR4S2 WILD-TYPE" "OR4S2 WILD-TYPE" "OR4S2 WILD-TYPE" 
     TCGA-50-5049      TCGA-50-5051      TCGA-50-5055      TCGA-50-5066 
"OR4S2 WILD-TYPE" "OR4S2 WILD-TYPE" "OR4S2 WILD-TYPE" "OR4S2 WILD-TYPE" 
     TCGA-50-5068      TCGA-50-5072      TCGA-50-5930      TCGA-50-5931 
"OR4S2 WILD-TYPE" "OR4S2 WILD-TYPE" "OR4S2 WILD-TYPE" "OR4S2 WILD-TYPE" 
     TCGA-50-5932      TCGA-50-5933      TCGA-50-5935      TCGA-50-5936 
"OR4S2 WILD-TYPE" "OR4S2 WILD-TYPE" "OR4S2 WILD-TYPE" "OR4S2 WILD-TYPE" 
     TCGA-50-5939      TCGA-50-5941      TCGA-50-5942      TCGA-50-5944 
"OR4S2 WILD-TYPE" "OR4S2 WILD-TYPE" "OR4S2 WILD-TYPE" "OR4S2 WILD-TYPE" 
     TCGA-50-5946      TCGA-50-6590      TCGA-50-6591      TCGA-50-6592 
"OR4S2 WILD-TYPE" "OR4S2 WILD-TYPE" "OR4S2 WILD-TYPE" "OR4S2 WILD-TYPE" 
     TCGA-50-6593      TCGA-50-6594      TCGA-50-6595      TCGA-50-6597 
"OR4S2 WILD-TYPE" "OR4S2 WILD-TYPE" "OR4S2 WILD-TYPE" "OR4S2 WILD-TYPE" 
     TCGA-55-1592      TCGA-55-1594      TCGA-55-1595      TCGA-55-1596 
"OR4S2 WILD-TYPE" "OR4S2 WILD-TYPE" "OR4S2 WILD-TYPE" "OR4S2 WILD-TYPE" 
     TCGA-55-5899      TCGA-55-6543      TCGA-55-6642      TCGA-55-6712 
"OR4S2 WILD-TYPE" "OR4S2 WILD-TYPE" "OR4S2 WILD-TYPE" "OR4S2 WILD-TYPE" 
     TCGA-64-1676      TCGA-64-1677      TCGA-64-1678      TCGA-64-1680 
"OR4S2 WILD-TYPE" "OR4S2 WILD-TYPE" "OR4S2 WILD-TYPE" "OR4S2 WILD-TYPE" 
     TCGA-64-5774      TCGA-64-5775      TCGA-64-5778      TCGA-64-5779 
"OR4S2 WILD-TYPE" "OR4S2 WILD-TYPE" "OR4S2 WILD-TYPE" "OR4S2 WILD-TYPE" 
     TCGA-64-5781      TCGA-64-5815      TCGA-67-3770      TCGA-67-3771 
  "OR4S2 MUTATED" "OR4S2 WILD-TYPE" "OR4S2 WILD-TYPE"   "OR4S2 MUTATED" 
     TCGA-67-3772      TCGA-67-3773      TCGA-67-3774      TCGA-67-6215 
"OR4S2 WILD-TYPE" "OR4S2 WILD-TYPE" "OR4S2 WILD-TYPE" "OR4S2 WILD-TYPE" 
     TCGA-67-6216      TCGA-67-6217      TCGA-71-6725      TCGA-73-4658 
"OR4S2 WILD-TYPE" "OR4S2 WILD-TYPE" "OR4S2 WILD-TYPE" "OR4S2 WILD-TYPE" 
     TCGA-73-4659      TCGA-73-4662      TCGA-73-4666      TCGA-73-4668 
"OR4S2 WILD-TYPE" "OR4S2 WILD-TYPE" "OR4S2 WILD-TYPE" "OR4S2 WILD-TYPE" 
     TCGA-73-4670      TCGA-73-4675      TCGA-73-4676      TCGA-73-4677 
"OR4S2 WILD-TYPE" "OR4S2 WILD-TYPE" "OR4S2 WILD-TYPE" "OR4S2 WILD-TYPE" 
     TCGA-91-6828      TCGA-91-6829      TCGA-91-6831      TCGA-91-6835 
"OR4S2 WILD-TYPE" "OR4S2 WILD-TYPE" "OR4S2 WILD-TYPE" "OR4S2 WILD-TYPE" 
     TCGA-91-6836 
"OR4S2 WILD-TYPE" 
[1] "hr=" "2"  
D53V2, continuous
D53V3, binary
[1] "tbl2"
                 cls
clus              [,1] [,2]
  OR4S2 MUTATED      3    3
  OR4S2 WILD-TYPE   90   76
        clus
vv       OR4S2 MUTATED OR4S2 WILD-TYPE
  FEMALE             3              90
  MALE               3              76
D53V4, continuous
D53V5, multiclass
D53V6, multiclass
    clus
vv   OR4S2 MUTATED OR4S2 WILD-TYPE
  T1             2              39
  T2             3             105
  T3             1              13
  T4             0               8
D53V7, multiclass
       clus
vv      OR4S2 MUTATED OR4S2 WILD-TYPE
  N0                4              91
  N1                1              36
  N2+N3             1              34
D53V8, multiclass
    clus
vv   OR4S2 MUTATED OR4S2 WILD-TYPE
  M0             5             132
  M1             1               8
  MX             0              22
D53V9, multiclass
     clus
vv    OR4S2 MUTATED OR4S2 WILD-TYPE
  I               3              85
  II              2              31
  III             0              39
  IV              1               8
D53V10, binary
[1] "tbl2"
                 cls
clus              [,1] [,2]
  OR4S2 MUTATED      0    6
  OR4S2 WILD-TYPE   16  150
     clus
vv    OR4S2 MUTATED OR4S2 WILD-TYPE
  NO              0              16
  YES             6             150
D53V11, continuous
D53V12, continuous
D53V13, multiclass
                                             clus
vv                                            OR4S2 MUTATED OR4S2 WILD-TYPE
  CURRENT REFORMED SMOKER FOR < OR = 15 YEARS             4              58
  CURRENT REFORMED SMOKER FOR > 15 YEARS                  2              44
  CURRENT SMOKER                                          0              28
  LIFELONG NON-SMOKER                                     0              24
D53V14, continuous
[1] "Remove cluster labels:" "OR4S2 MUTATED"         
clus
  OR4S2 MUTATED OR4S2 WILD-TYPE 
              2              66 
     TCGA-05-4384      TCGA-05-4390      TCGA-05-4396      TCGA-05-4405 
"OR4S2 WILD-TYPE" "OR4S2 WILD-TYPE" "OR4S2 WILD-TYPE" "OR4S2 WILD-TYPE" 
     TCGA-05-4410      TCGA-05-4415      TCGA-05-4417      TCGA-05-4424 
"OR4S2 WILD-TYPE" "OR4S2 WILD-TYPE" "OR4S2 WILD-TYPE" "OR4S2 WILD-TYPE" 
     TCGA-05-4427      TCGA-05-4433      TCGA-05-5420      TCGA-05-5425 
"OR4S2 WILD-TYPE" "OR4S2 WILD-TYPE" "OR4S2 WILD-TYPE" "OR4S2 WILD-TYPE" 
     TCGA-05-5428      TCGA-35-4122      TCGA-35-4123      TCGA-35-5375 
"OR4S2 WILD-TYPE" "OR4S2 WILD-TYPE" "OR4S2 WILD-TYPE" "OR4S2 WILD-TYPE" 
     TCGA-38-4625      TCGA-38-4626      TCGA-44-2655      TCGA-44-2656 
"OR4S2 WILD-TYPE" "OR4S2 WILD-TYPE" "OR4S2 WILD-TYPE" "OR4S2 WILD-TYPE" 
     TCGA-44-2657      TCGA-44-2659      TCGA-44-2662      TCGA-44-2666 
"OR4S2 WILD-TYPE" "OR4S2 WILD-TYPE" "OR4S2 WILD-TYPE" "OR4S2 WILD-TYPE" 
     TCGA-44-2668      TCGA-44-3396      TCGA-44-3398      TCGA-44-3918 
"OR4S2 WILD-TYPE" "OR4S2 WILD-TYPE" "OR4S2 WILD-TYPE" "OR4S2 WILD-TYPE" 
     TCGA-44-4112      TCGA-44-5645      TCGA-44-6144      TCGA-44-6145 
"OR4S2 WILD-TYPE" "OR4S2 WILD-TYPE" "OR4S2 WILD-TYPE" "OR4S2 WILD-TYPE" 
     TCGA-44-6147      TCGA-44-6148      TCGA-44-6774      TCGA-44-6775 
"OR4S2 WILD-TYPE" "OR4S2 WILD-TYPE" "OR4S2 WILD-TYPE" "OR4S2 WILD-TYPE" 
     TCGA-44-6776      TCGA-44-6777      TCGA-44-6778      TCGA-44-6779 
"OR4S2 WILD-TYPE" "OR4S2 WILD-TYPE" "OR4S2 WILD-TYPE" "OR4S2 WILD-TYPE" 
     TCGA-49-4486      TCGA-49-4494      TCGA-49-4505      TCGA-55-1592 
"OR4S2 WILD-TYPE" "OR4S2 WILD-TYPE" "OR4S2 WILD-TYPE" "OR4S2 WILD-TYPE" 
     TCGA-55-1594      TCGA-55-1595      TCGA-55-1596      TCGA-55-5899 
"OR4S2 WILD-TYPE" "OR4S2 WILD-TYPE" "OR4S2 WILD-TYPE" "OR4S2 WILD-TYPE" 
     TCGA-55-6642      TCGA-55-6712      TCGA-64-1677      TCGA-64-1678 
"OR4S2 WILD-TYPE" "OR4S2 WILD-TYPE" "OR4S2 WILD-TYPE" "OR4S2 WILD-TYPE" 
     TCGA-64-1680      TCGA-64-5774      TCGA-64-5775      TCGA-64-5778 
"OR4S2 WILD-TYPE" "OR4S2 WILD-TYPE" "OR4S2 WILD-TYPE" "OR4S2 WILD-TYPE" 
     TCGA-64-5779      TCGA-73-4659      TCGA-73-4662      TCGA-73-4666 
"OR4S2 WILD-TYPE" "OR4S2 WILD-TYPE" "OR4S2 WILD-TYPE" "OR4S2 WILD-TYPE" 
     TCGA-73-4668      TCGA-73-4670      TCGA-73-4675      TCGA-73-4676 
"OR4S2 WILD-TYPE" "OR4S2 WILD-TYPE" "OR4S2 WILD-TYPE" "OR4S2 WILD-TYPE" 
     TCGA-91-6829      TCGA-91-6836 
"OR4S2 WILD-TYPE" "OR4S2 WILD-TYPE" 

Clustering(54) Variable = ZNF268 MUTATION ANALYSIS
D54V1, survival
                  sevent
clus2               0  1
  ZNF268 MUTATED    2  2
  ZNF268 WILD-TYPE 97 48
  ZNF268 MUTATED ZNF268 WILD-TYPE 
               4              145 
  ZNF268 MUTATED ZNF268 WILD-TYPE 
               2               48 
$`ZNF268 MUTATED`
TCGA-05-4397 TCGA-44-2656 TCGA-44-3918 TCGA-55-1592 
       24.03        19.10         6.44        23.05 

$`ZNF268 WILD-TYPE`
TCGA-05-4249 TCGA-05-4250 TCGA-05-4382 TCGA-05-4384 TCGA-05-4390 TCGA-05-4396 
       38.07         3.98        19.92        14.01        37.02         9.96 
TCGA-05-4398 TCGA-05-4402 TCGA-05-4405 TCGA-05-4415 TCGA-05-4417 TCGA-05-4418 
       47.05         8.02        20.05         2.96        14.93         8.98 
TCGA-05-4420 TCGA-05-4424 TCGA-05-4426 TCGA-05-4427 TCGA-05-4430 TCGA-05-4432 
       29.95        30.02        26.01        26.01        25.02        25.02 
TCGA-05-4433 TCGA-05-4434 TCGA-05-5420 TCGA-05-5423 TCGA-05-5425 TCGA-05-5429 
       24.00        15.02         1.02         4.96         2.96         0.99 
TCGA-05-5715 TCGA-35-3615 TCGA-35-4122 TCGA-35-4123 TCGA-35-5375 TCGA-38-4625 
        2.04         0.46         7.36         5.95         8.68        47.61 
TCGA-38-4626 TCGA-38-4627 TCGA-38-4628 TCGA-38-4629 TCGA-38-4630 TCGA-38-4631 
       85.32        37.71        49.02        28.37        35.28        11.64 
TCGA-38-4632 TCGA-38-6178 TCGA-44-2655 TCGA-44-2657 TCGA-44-2659 TCGA-44-2661 
       44.61         5.19        18.87        13.15        17.39         3.39 
TCGA-44-2662 TCGA-44-2665 TCGA-44-2666 TCGA-44-2668 TCGA-44-3396 TCGA-44-3398 
       15.78        13.15         3.19         8.09        10.22         8.32 
TCGA-44-3919 TCGA-44-4112 TCGA-44-5643 TCGA-44-5645 TCGA-44-6144 TCGA-44-6145 
        6.21         4.60         3.48         6.84         0.30         3.35 
TCGA-44-6146 TCGA-44-6147 TCGA-44-6148 TCGA-44-6774 TCGA-44-6775 TCGA-44-6776 
        9.93         7.76         3.12         5.42         2.70        63.72 
TCGA-44-6777 TCGA-44-6778 TCGA-44-6779 TCGA-49-4486 TCGA-49-4487 TCGA-49-4488 
       32.45        36.49        16.41        76.21        28.11        28.57 
TCGA-49-4490 TCGA-49-4494 TCGA-49-4501 TCGA-49-4505 TCGA-49-4506 TCGA-49-4507 
       12.66        35.54        46.72        14.07        32.84         8.81 
TCGA-49-4510 TCGA-49-4512 TCGA-49-4514 TCGA-49-6742 TCGA-49-6743 TCGA-49-6744 
       29.46        29.75        43.20        15.02        12.13        12.99 
TCGA-49-6745 TCGA-50-5044 TCGA-50-5045 TCGA-50-5049 TCGA-50-5051 TCGA-50-5055 
        4.93        20.48        71.47        48.82        14.96        25.81 
TCGA-50-5066 TCGA-50-5068 TCGA-50-5072 TCGA-50-5930 TCGA-50-5931 TCGA-50-5932 
        9.76        49.28         8.05         9.27         8.78        35.87 
TCGA-50-5933 TCGA-50-5935 TCGA-50-5936 TCGA-50-5939 TCGA-50-5941 TCGA-50-5942 
       77.88        21.47         8.45        15.12         9.37         4.44 
TCGA-50-5944 TCGA-50-5946 TCGA-50-6590 TCGA-50-6591 TCGA-50-6592 TCGA-50-6593 
       12.26        11.47        42.31         3.88        25.51        11.05 
TCGA-50-6594 TCGA-50-6595 TCGA-50-6597 TCGA-55-1594 TCGA-55-1595 TCGA-55-1596 
       12.16         6.21        33.37        38.73        48.62        45.17 
TCGA-55-5899 TCGA-55-6543 TCGA-55-6642 TCGA-55-6712 TCGA-64-1676 TCGA-64-1677 
        2.86         0.07        32.61         0.79        56.81        20.65 
TCGA-64-1678 TCGA-64-1680 TCGA-64-5774 TCGA-64-5775 TCGA-64-5778 TCGA-64-5779 
       39.09        37.02        83.84         0.10        30.44        16.67 
TCGA-64-5781 TCGA-64-5815 TCGA-67-3770 TCGA-67-3771 TCGA-67-3772 TCGA-67-3773 
       39.52         7.33         0.99         1.97         0.59         2.04 
TCGA-67-3774 TCGA-67-6215 TCGA-67-6216 TCGA-67-6217 TCGA-71-6725 TCGA-73-4658 
        0.59         0.89         0.69        13.87         2.01        52.57 
TCGA-73-4659 TCGA-73-4662 TCGA-73-4666 TCGA-73-4668 TCGA-73-4670 TCGA-73-4675 
       23.38        29.95        20.28        15.35         0.46         1.32 
TCGA-73-4676 TCGA-73-4677 TCGA-91-6828 TCGA-91-6829 TCGA-91-6831 TCGA-91-6835 
        4.01         1.25         1.22        41.33         1.28         1.15 
TCGA-91-6836 
        0.36 

  ZNF268 MUTATED ZNF268 WILD-TYPE 
            6.44             0.07 
  ZNF268 MUTATED ZNF268 WILD-TYPE 
           24.03            85.32 
  ZNF268 MUTATED ZNF268 WILD-TYPE 
          21.075           13.150 
[1] "6.4 - 24.0 (21.1)" "0.1 - 85.3 (13.2)"
      TCGA-05-4249       TCGA-05-4250       TCGA-05-4382       TCGA-05-4384 
"ZNF268 WILD-TYPE" "ZNF268 WILD-TYPE" "ZNF268 WILD-TYPE" "ZNF268 WILD-TYPE" 
      TCGA-05-4390       TCGA-05-4396       TCGA-05-4397       TCGA-05-4398 
"ZNF268 WILD-TYPE" "ZNF268 WILD-TYPE"   "ZNF268 MUTATED" "ZNF268 WILD-TYPE" 
      TCGA-05-4402       TCGA-05-4405       TCGA-05-4415       TCGA-05-4417 
"ZNF268 WILD-TYPE" "ZNF268 WILD-TYPE" "ZNF268 WILD-TYPE" "ZNF268 WILD-TYPE" 
      TCGA-05-4418       TCGA-05-4420       TCGA-05-4424       TCGA-05-4426 
"ZNF268 WILD-TYPE" "ZNF268 WILD-TYPE" "ZNF268 WILD-TYPE" "ZNF268 WILD-TYPE" 
      TCGA-05-4427       TCGA-05-4430       TCGA-05-4432       TCGA-05-4433 
"ZNF268 WILD-TYPE" "ZNF268 WILD-TYPE" "ZNF268 WILD-TYPE" "ZNF268 WILD-TYPE" 
      TCGA-05-4434       TCGA-05-5420       TCGA-05-5423       TCGA-05-5425 
"ZNF268 WILD-TYPE" "ZNF268 WILD-TYPE" "ZNF268 WILD-TYPE" "ZNF268 WILD-TYPE" 
      TCGA-05-5429       TCGA-05-5715       TCGA-35-3615       TCGA-35-4122 
"ZNF268 WILD-TYPE" "ZNF268 WILD-TYPE" "ZNF268 WILD-TYPE" "ZNF268 WILD-TYPE" 
      TCGA-35-4123       TCGA-35-5375       TCGA-38-4625       TCGA-38-4626 
"ZNF268 WILD-TYPE" "ZNF268 WILD-TYPE" "ZNF268 WILD-TYPE" "ZNF268 WILD-TYPE" 
      TCGA-38-4627       TCGA-38-4628       TCGA-38-4629       TCGA-38-4630 
"ZNF268 WILD-TYPE" "ZNF268 WILD-TYPE" "ZNF268 WILD-TYPE" "ZNF268 WILD-TYPE" 
      TCGA-38-4631       TCGA-38-4632       TCGA-38-6178       TCGA-44-2655 
"ZNF268 WILD-TYPE" "ZNF268 WILD-TYPE" "ZNF268 WILD-TYPE" "ZNF268 WILD-TYPE" 
      TCGA-44-2656       TCGA-44-2657       TCGA-44-2659       TCGA-44-2661 
  "ZNF268 MUTATED" "ZNF268 WILD-TYPE" "ZNF268 WILD-TYPE" "ZNF268 WILD-TYPE" 
      TCGA-44-2662       TCGA-44-2665       TCGA-44-2666       TCGA-44-2668 
"ZNF268 WILD-TYPE" "ZNF268 WILD-TYPE" "ZNF268 WILD-TYPE" "ZNF268 WILD-TYPE" 
      TCGA-44-3396       TCGA-44-3398       TCGA-44-3918       TCGA-44-3919 
"ZNF268 WILD-TYPE" "ZNF268 WILD-TYPE"   "ZNF268 MUTATED" "ZNF268 WILD-TYPE" 
      TCGA-44-4112       TCGA-44-5643       TCGA-44-5645       TCGA-44-6144 
"ZNF268 WILD-TYPE" "ZNF268 WILD-TYPE" "ZNF268 WILD-TYPE" "ZNF268 WILD-TYPE" 
      TCGA-44-6145       TCGA-44-6146       TCGA-44-6147       TCGA-44-6148 
"ZNF268 WILD-TYPE" "ZNF268 WILD-TYPE" "ZNF268 WILD-TYPE" "ZNF268 WILD-TYPE" 
      TCGA-44-6774       TCGA-44-6775       TCGA-44-6776       TCGA-44-6777 
"ZNF268 WILD-TYPE" "ZNF268 WILD-TYPE" "ZNF268 WILD-TYPE" "ZNF268 WILD-TYPE" 
      TCGA-44-6778       TCGA-44-6779       TCGA-49-4486       TCGA-49-4487 
"ZNF268 WILD-TYPE" "ZNF268 WILD-TYPE" "ZNF268 WILD-TYPE" "ZNF268 WILD-TYPE" 
      TCGA-49-4488       TCGA-49-4490       TCGA-49-4494       TCGA-49-4501 
"ZNF268 WILD-TYPE" "ZNF268 WILD-TYPE" "ZNF268 WILD-TYPE" "ZNF268 WILD-TYPE" 
      TCGA-49-4505       TCGA-49-4506       TCGA-49-4507       TCGA-49-4510 
"ZNF268 WILD-TYPE" "ZNF268 WILD-TYPE" "ZNF268 WILD-TYPE" "ZNF268 WILD-TYPE" 
      TCGA-49-4512       TCGA-49-4514       TCGA-49-6742       TCGA-49-6743 
"ZNF268 WILD-TYPE" "ZNF268 WILD-TYPE" "ZNF268 WILD-TYPE" "ZNF268 WILD-TYPE" 
      TCGA-49-6744       TCGA-49-6745       TCGA-50-5044       TCGA-50-5045 
"ZNF268 WILD-TYPE" "ZNF268 WILD-TYPE" "ZNF268 WILD-TYPE" "ZNF268 WILD-TYPE" 
      TCGA-50-5049       TCGA-50-5051       TCGA-50-5055       TCGA-50-5066 
"ZNF268 WILD-TYPE" "ZNF268 WILD-TYPE" "ZNF268 WILD-TYPE" "ZNF268 WILD-TYPE" 
      TCGA-50-5068       TCGA-50-5072       TCGA-50-5930       TCGA-50-5931 
"ZNF268 WILD-TYPE" "ZNF268 WILD-TYPE" "ZNF268 WILD-TYPE" "ZNF268 WILD-TYPE" 
      TCGA-50-5932       TCGA-50-5933       TCGA-50-5935       TCGA-50-5936 
"ZNF268 WILD-TYPE" "ZNF268 WILD-TYPE" "ZNF268 WILD-TYPE" "ZNF268 WILD-TYPE" 
      TCGA-50-5939       TCGA-50-5941       TCGA-50-5942       TCGA-50-5944 
"ZNF268 WILD-TYPE" "ZNF268 WILD-TYPE" "ZNF268 WILD-TYPE" "ZNF268 WILD-TYPE" 
      TCGA-50-5946       TCGA-50-6590       TCGA-50-6591       TCGA-50-6592 
"ZNF268 WILD-TYPE" "ZNF268 WILD-TYPE" "ZNF268 WILD-TYPE" "ZNF268 WILD-TYPE" 
      TCGA-50-6593       TCGA-50-6594       TCGA-50-6595       TCGA-50-6597 
"ZNF268 WILD-TYPE" "ZNF268 WILD-TYPE" "ZNF268 WILD-TYPE" "ZNF268 WILD-TYPE" 
      TCGA-55-1592       TCGA-55-1594       TCGA-55-1595       TCGA-55-1596 
  "ZNF268 MUTATED" "ZNF268 WILD-TYPE" "ZNF268 WILD-TYPE" "ZNF268 WILD-TYPE" 
      TCGA-55-5899       TCGA-55-6543       TCGA-55-6642       TCGA-55-6712 
"ZNF268 WILD-TYPE" "ZNF268 WILD-TYPE" "ZNF268 WILD-TYPE" "ZNF268 WILD-TYPE" 
      TCGA-64-1676       TCGA-64-1677       TCGA-64-1678       TCGA-64-1680 
"ZNF268 WILD-TYPE" "ZNF268 WILD-TYPE" "ZNF268 WILD-TYPE" "ZNF268 WILD-TYPE" 
      TCGA-64-5774       TCGA-64-5775       TCGA-64-5778       TCGA-64-5779 
"ZNF268 WILD-TYPE" "ZNF268 WILD-TYPE" "ZNF268 WILD-TYPE" "ZNF268 WILD-TYPE" 
      TCGA-64-5781       TCGA-64-5815       TCGA-67-3770       TCGA-67-3771 
"ZNF268 WILD-TYPE" "ZNF268 WILD-TYPE" "ZNF268 WILD-TYPE" "ZNF268 WILD-TYPE" 
      TCGA-67-3772       TCGA-67-3773       TCGA-67-3774       TCGA-67-6215 
"ZNF268 WILD-TYPE" "ZNF268 WILD-TYPE" "ZNF268 WILD-TYPE" "ZNF268 WILD-TYPE" 
      TCGA-67-6216       TCGA-67-6217       TCGA-71-6725       TCGA-73-4658 
"ZNF268 WILD-TYPE" "ZNF268 WILD-TYPE" "ZNF268 WILD-TYPE" "ZNF268 WILD-TYPE" 
      TCGA-73-4659       TCGA-73-4662       TCGA-73-4666       TCGA-73-4668 
"ZNF268 WILD-TYPE" "ZNF268 WILD-TYPE" "ZNF268 WILD-TYPE" "ZNF268 WILD-TYPE" 
      TCGA-73-4670       TCGA-73-4675       TCGA-73-4676       TCGA-73-4677 
"ZNF268 WILD-TYPE" "ZNF268 WILD-TYPE" "ZNF268 WILD-TYPE" "ZNF268 WILD-TYPE" 
      TCGA-91-6828       TCGA-91-6829       TCGA-91-6831       TCGA-91-6835 
"ZNF268 WILD-TYPE" "ZNF268 WILD-TYPE" "ZNF268 WILD-TYPE" "ZNF268 WILD-TYPE" 
      TCGA-91-6836 
"ZNF268 WILD-TYPE" 
      TCGA-05-4249       TCGA-05-4250       TCGA-05-4382       TCGA-05-4384 
"ZNF268 WILD-TYPE" "ZNF268 WILD-TYPE" "ZNF268 WILD-TYPE" "ZNF268 WILD-TYPE" 
      TCGA-05-4390       TCGA-05-4396       TCGA-05-4397       TCGA-05-4398 
"ZNF268 WILD-TYPE" "ZNF268 WILD-TYPE"   "ZNF268 MUTATED" "ZNF268 WILD-TYPE" 
      TCGA-05-4402       TCGA-05-4405       TCGA-05-4415       TCGA-05-4417 
"ZNF268 WILD-TYPE" "ZNF268 WILD-TYPE" "ZNF268 WILD-TYPE" "ZNF268 WILD-TYPE" 
      TCGA-05-4418       TCGA-05-4420       TCGA-05-4424       TCGA-05-4426 
"ZNF268 WILD-TYPE" "ZNF268 WILD-TYPE" "ZNF268 WILD-TYPE" "ZNF268 WILD-TYPE" 
      TCGA-05-4427       TCGA-05-4430       TCGA-05-4432       TCGA-05-4433 
"ZNF268 WILD-TYPE" "ZNF268 WILD-TYPE" "ZNF268 WILD-TYPE" "ZNF268 WILD-TYPE" 
      TCGA-05-4434       TCGA-05-5420       TCGA-05-5423       TCGA-05-5425 
"ZNF268 WILD-TYPE" "ZNF268 WILD-TYPE" "ZNF268 WILD-TYPE" "ZNF268 WILD-TYPE" 
      TCGA-05-5429       TCGA-05-5715       TCGA-35-3615       TCGA-35-4122 
"ZNF268 WILD-TYPE" "ZNF268 WILD-TYPE" "ZNF268 WILD-TYPE" "ZNF268 WILD-TYPE" 
      TCGA-35-4123       TCGA-35-5375       TCGA-38-4625       TCGA-38-4626 
"ZNF268 WILD-TYPE" "ZNF268 WILD-TYPE" "ZNF268 WILD-TYPE" "ZNF268 WILD-TYPE" 
      TCGA-38-4627       TCGA-38-4628       TCGA-38-4629       TCGA-38-4630 
"ZNF268 WILD-TYPE" "ZNF268 WILD-TYPE" "ZNF268 WILD-TYPE" "ZNF268 WILD-TYPE" 
      TCGA-38-4631       TCGA-38-4632       TCGA-38-6178       TCGA-44-2655 
"ZNF268 WILD-TYPE" "ZNF268 WILD-TYPE" "ZNF268 WILD-TYPE" "ZNF268 WILD-TYPE" 
      TCGA-44-2656       TCGA-44-2657       TCGA-44-2659       TCGA-44-2661 
  "ZNF268 MUTATED" "ZNF268 WILD-TYPE" "ZNF268 WILD-TYPE" "ZNF268 WILD-TYPE" 
      TCGA-44-2662       TCGA-44-2665       TCGA-44-2666       TCGA-44-2668 
"ZNF268 WILD-TYPE" "ZNF268 WILD-TYPE" "ZNF268 WILD-TYPE" "ZNF268 WILD-TYPE" 
      TCGA-44-3396       TCGA-44-3398       TCGA-44-3918       TCGA-44-3919 
"ZNF268 WILD-TYPE" "ZNF268 WILD-TYPE"   "ZNF268 MUTATED" "ZNF268 WILD-TYPE" 
      TCGA-44-4112       TCGA-44-5643       TCGA-44-5645       TCGA-44-6144 
"ZNF268 WILD-TYPE" "ZNF268 WILD-TYPE" "ZNF268 WILD-TYPE" "ZNF268 WILD-TYPE" 
      TCGA-44-6145       TCGA-44-6146       TCGA-44-6147       TCGA-44-6148 
"ZNF268 WILD-TYPE" "ZNF268 WILD-TYPE" "ZNF268 WILD-TYPE" "ZNF268 WILD-TYPE" 
      TCGA-44-6774       TCGA-44-6775       TCGA-44-6776       TCGA-44-6777 
"ZNF268 WILD-TYPE" "ZNF268 WILD-TYPE" "ZNF268 WILD-TYPE" "ZNF268 WILD-TYPE" 
      TCGA-44-6778       TCGA-44-6779       TCGA-49-4486       TCGA-49-4487 
"ZNF268 WILD-TYPE" "ZNF268 WILD-TYPE" "ZNF268 WILD-TYPE" "ZNF268 WILD-TYPE" 
      TCGA-49-4488       TCGA-49-4490       TCGA-49-4494       TCGA-49-4501 
"ZNF268 WILD-TYPE" "ZNF268 WILD-TYPE" "ZNF268 WILD-TYPE" "ZNF268 WILD-TYPE" 
      TCGA-49-4505       TCGA-49-4506       TCGA-49-4507       TCGA-49-4510 
"ZNF268 WILD-TYPE" "ZNF268 WILD-TYPE" "ZNF268 WILD-TYPE" "ZNF268 WILD-TYPE" 
      TCGA-49-4512       TCGA-49-4514       TCGA-49-6742       TCGA-49-6743 
"ZNF268 WILD-TYPE" "ZNF268 WILD-TYPE" "ZNF268 WILD-TYPE" "ZNF268 WILD-TYPE" 
      TCGA-49-6744       TCGA-49-6745       TCGA-50-5044       TCGA-50-5045 
"ZNF268 WILD-TYPE" "ZNF268 WILD-TYPE" "ZNF268 WILD-TYPE" "ZNF268 WILD-TYPE" 
      TCGA-50-5049       TCGA-50-5051       TCGA-50-5055       TCGA-50-5066 
"ZNF268 WILD-TYPE" "ZNF268 WILD-TYPE" "ZNF268 WILD-TYPE" "ZNF268 WILD-TYPE" 
      TCGA-50-5068       TCGA-50-5072       TCGA-50-5930       TCGA-50-5931 
"ZNF268 WILD-TYPE" "ZNF268 WILD-TYPE" "ZNF268 WILD-TYPE" "ZNF268 WILD-TYPE" 
      TCGA-50-5932       TCGA-50-5933       TCGA-50-5935       TCGA-50-5936 
"ZNF268 WILD-TYPE" "ZNF268 WILD-TYPE" "ZNF268 WILD-TYPE" "ZNF268 WILD-TYPE" 
      TCGA-50-5939       TCGA-50-5941       TCGA-50-5942       TCGA-50-5944 
"ZNF268 WILD-TYPE" "ZNF268 WILD-TYPE" "ZNF268 WILD-TYPE" "ZNF268 WILD-TYPE" 
      TCGA-50-5946       TCGA-50-6590       TCGA-50-6591       TCGA-50-6592 
"ZNF268 WILD-TYPE" "ZNF268 WILD-TYPE" "ZNF268 WILD-TYPE" "ZNF268 WILD-TYPE" 
      TCGA-50-6593       TCGA-50-6594       TCGA-50-6595       TCGA-50-6597 
"ZNF268 WILD-TYPE" "ZNF268 WILD-TYPE" "ZNF268 WILD-TYPE" "ZNF268 WILD-TYPE" 
      TCGA-55-1592       TCGA-55-1594       TCGA-55-1595       TCGA-55-1596 
  "ZNF268 MUTATED" "ZNF268 WILD-TYPE" "ZNF268 WILD-TYPE" "ZNF268 WILD-TYPE" 
      TCGA-55-5899       TCGA-55-6543       TCGA-55-6642       TCGA-55-6712 
"ZNF268 WILD-TYPE" "ZNF268 WILD-TYPE" "ZNF268 WILD-TYPE" "ZNF268 WILD-TYPE" 
      TCGA-64-1676       TCGA-64-1677       TCGA-64-1678       TCGA-64-1680 
"ZNF268 WILD-TYPE" "ZNF268 WILD-TYPE" "ZNF268 WILD-TYPE" "ZNF268 WILD-TYPE" 
      TCGA-64-5774       TCGA-64-5775       TCGA-64-5778       TCGA-64-5779 
"ZNF268 WILD-TYPE" "ZNF268 WILD-TYPE" "ZNF268 WILD-TYPE" "ZNF268 WILD-TYPE" 
      TCGA-64-5781       TCGA-64-5815       TCGA-67-3770       TCGA-67-3771 
"ZNF268 WILD-TYPE" "ZNF268 WILD-TYPE" "ZNF268 WILD-TYPE" "ZNF268 WILD-TYPE" 
      TCGA-67-3772       TCGA-67-3773       TCGA-67-3774       TCGA-67-6215 
"ZNF268 WILD-TYPE" "ZNF268 WILD-TYPE" "ZNF268 WILD-TYPE" "ZNF268 WILD-TYPE" 
      TCGA-67-6216       TCGA-67-6217       TCGA-71-6725       TCGA-73-4658 
"ZNF268 WILD-TYPE" "ZNF268 WILD-TYPE" "ZNF268 WILD-TYPE" "ZNF268 WILD-TYPE" 
      TCGA-73-4659       TCGA-73-4662       TCGA-73-4666       TCGA-73-4668 
"ZNF268 WILD-TYPE" "ZNF268 WILD-TYPE" "ZNF268 WILD-TYPE" "ZNF268 WILD-TYPE" 
      TCGA-73-4670       TCGA-73-4675       TCGA-73-4676       TCGA-73-4677 
"ZNF268 WILD-TYPE" "ZNF268 WILD-TYPE" "ZNF268 WILD-TYPE" "ZNF268 WILD-TYPE" 
      TCGA-91-6828       TCGA-91-6829       TCGA-91-6831       TCGA-91-6835 
"ZNF268 WILD-TYPE" "ZNF268 WILD-TYPE" "ZNF268 WILD-TYPE" "ZNF268 WILD-TYPE" 
      TCGA-91-6836 
"ZNF268 WILD-TYPE" 
      TCGA-05-4249       TCGA-05-4250       TCGA-05-4382       TCGA-05-4384 
"ZNF268 WILD-TYPE" "ZNF268 WILD-TYPE" "ZNF268 WILD-TYPE" "ZNF268 WILD-TYPE" 
      TCGA-05-4390       TCGA-05-4396       TCGA-05-4397       TCGA-05-4398 
"ZNF268 WILD-TYPE" "ZNF268 WILD-TYPE"   "ZNF268 MUTATED" "ZNF268 WILD-TYPE" 
      TCGA-05-4402       TCGA-05-4405       TCGA-05-4415       TCGA-05-4417 
"ZNF268 WILD-TYPE" "ZNF268 WILD-TYPE" "ZNF268 WILD-TYPE" "ZNF268 WILD-TYPE" 
      TCGA-05-4418       TCGA-05-4420       TCGA-05-4424       TCGA-05-4426 
"ZNF268 WILD-TYPE" "ZNF268 WILD-TYPE" "ZNF268 WILD-TYPE" "ZNF268 WILD-TYPE" 
      TCGA-05-4427       TCGA-05-4430       TCGA-05-4432       TCGA-05-4433 
"ZNF268 WILD-TYPE" "ZNF268 WILD-TYPE" "ZNF268 WILD-TYPE" "ZNF268 WILD-TYPE" 
      TCGA-05-4434       TCGA-05-5420       TCGA-05-5423       TCGA-05-5425 
"ZNF268 WILD-TYPE" "ZNF268 WILD-TYPE" "ZNF268 WILD-TYPE" "ZNF268 WILD-TYPE" 
      TCGA-05-5429       TCGA-05-5715       TCGA-35-3615       TCGA-35-4122 
"ZNF268 WILD-TYPE" "ZNF268 WILD-TYPE" "ZNF268 WILD-TYPE" "ZNF268 WILD-TYPE" 
      TCGA-35-4123       TCGA-35-5375       TCGA-38-4625       TCGA-38-4626 
"ZNF268 WILD-TYPE" "ZNF268 WILD-TYPE" "ZNF268 WILD-TYPE" "ZNF268 WILD-TYPE" 
      TCGA-38-4627       TCGA-38-4628       TCGA-38-4629       TCGA-38-4630 
"ZNF268 WILD-TYPE" "ZNF268 WILD-TYPE" "ZNF268 WILD-TYPE" "ZNF268 WILD-TYPE" 
      TCGA-38-4631       TCGA-38-4632       TCGA-38-6178       TCGA-44-2655 
"ZNF268 WILD-TYPE" "ZNF268 WILD-TYPE" "ZNF268 WILD-TYPE" "ZNF268 WILD-TYPE" 
      TCGA-44-2656       TCGA-44-2657       TCGA-44-2659       TCGA-44-2661 
  "ZNF268 MUTATED" "ZNF268 WILD-TYPE" "ZNF268 WILD-TYPE" "ZNF268 WILD-TYPE" 
      TCGA-44-2662       TCGA-44-2665       TCGA-44-2666       TCGA-44-2668 
"ZNF268 WILD-TYPE" "ZNF268 WILD-TYPE" "ZNF268 WILD-TYPE" "ZNF268 WILD-TYPE" 
      TCGA-44-3396       TCGA-44-3398       TCGA-44-3918       TCGA-44-3919 
"ZNF268 WILD-TYPE" "ZNF268 WILD-TYPE"   "ZNF268 MUTATED" "ZNF268 WILD-TYPE" 
      TCGA-44-4112       TCGA-44-5643       TCGA-44-5645       TCGA-44-6144 
"ZNF268 WILD-TYPE" "ZNF268 WILD-TYPE" "ZNF268 WILD-TYPE" "ZNF268 WILD-TYPE" 
      TCGA-44-6145       TCGA-44-6146       TCGA-44-6147       TCGA-44-6148 
"ZNF268 WILD-TYPE" "ZNF268 WILD-TYPE" "ZNF268 WILD-TYPE" "ZNF268 WILD-TYPE" 
      TCGA-44-6774       TCGA-44-6775       TCGA-44-6776       TCGA-44-6777 
"ZNF268 WILD-TYPE" "ZNF268 WILD-TYPE" "ZNF268 WILD-TYPE" "ZNF268 WILD-TYPE" 
      TCGA-44-6778       TCGA-44-6779       TCGA-49-4486       TCGA-49-4487 
"ZNF268 WILD-TYPE" "ZNF268 WILD-TYPE" "ZNF268 WILD-TYPE" "ZNF268 WILD-TYPE" 
      TCGA-49-4488       TCGA-49-4490       TCGA-49-4494       TCGA-49-4501 
"ZNF268 WILD-TYPE" "ZNF268 WILD-TYPE" "ZNF268 WILD-TYPE" "ZNF268 WILD-TYPE" 
      TCGA-49-4505       TCGA-49-4506       TCGA-49-4507       TCGA-49-4510 
"ZNF268 WILD-TYPE" "ZNF268 WILD-TYPE" "ZNF268 WILD-TYPE" "ZNF268 WILD-TYPE" 
      TCGA-49-4512       TCGA-49-4514       TCGA-49-6742       TCGA-49-6743 
"ZNF268 WILD-TYPE" "ZNF268 WILD-TYPE" "ZNF268 WILD-TYPE" "ZNF268 WILD-TYPE" 
      TCGA-49-6744       TCGA-49-6745       TCGA-50-5044       TCGA-50-5045 
"ZNF268 WILD-TYPE" "ZNF268 WILD-TYPE" "ZNF268 WILD-TYPE" "ZNF268 WILD-TYPE" 
      TCGA-50-5049       TCGA-50-5051       TCGA-50-5055       TCGA-50-5066 
"ZNF268 WILD-TYPE" "ZNF268 WILD-TYPE" "ZNF268 WILD-TYPE" "ZNF268 WILD-TYPE" 
      TCGA-50-5068       TCGA-50-5072       TCGA-50-5930       TCGA-50-5931 
"ZNF268 WILD-TYPE" "ZNF268 WILD-TYPE" "ZNF268 WILD-TYPE" "ZNF268 WILD-TYPE" 
      TCGA-50-5932       TCGA-50-5933       TCGA-50-5935       TCGA-50-5936 
"ZNF268 WILD-TYPE" "ZNF268 WILD-TYPE" "ZNF268 WILD-TYPE" "ZNF268 WILD-TYPE" 
      TCGA-50-5939       TCGA-50-5941       TCGA-50-5942       TCGA-50-5944 
"ZNF268 WILD-TYPE" "ZNF268 WILD-TYPE" "ZNF268 WILD-TYPE" "ZNF268 WILD-TYPE" 
      TCGA-50-5946       TCGA-50-6590       TCGA-50-6591       TCGA-50-6592 
"ZNF268 WILD-TYPE" "ZNF268 WILD-TYPE" "ZNF268 WILD-TYPE" "ZNF268 WILD-TYPE" 
      TCGA-50-6593       TCGA-50-6594       TCGA-50-6595       TCGA-50-6597 
"ZNF268 WILD-TYPE" "ZNF268 WILD-TYPE" "ZNF268 WILD-TYPE" "ZNF268 WILD-TYPE" 
      TCGA-55-1592       TCGA-55-1594       TCGA-55-1595       TCGA-55-1596 
  "ZNF268 MUTATED" "ZNF268 WILD-TYPE" "ZNF268 WILD-TYPE" "ZNF268 WILD-TYPE" 
      TCGA-55-5899       TCGA-55-6543       TCGA-55-6642       TCGA-55-6712 
"ZNF268 WILD-TYPE" "ZNF268 WILD-TYPE" "ZNF268 WILD-TYPE" "ZNF268 WILD-TYPE" 
      TCGA-64-1676       TCGA-64-1677       TCGA-64-1678       TCGA-64-1680 
"ZNF268 WILD-TYPE" "ZNF268 WILD-TYPE" "ZNF268 WILD-TYPE" "ZNF268 WILD-TYPE" 
      TCGA-64-5774       TCGA-64-5775       TCGA-64-5778       TCGA-64-5779 
"ZNF268 WILD-TYPE" "ZNF268 WILD-TYPE" "ZNF268 WILD-TYPE" "ZNF268 WILD-TYPE" 
      TCGA-64-5781       TCGA-64-5815       TCGA-67-3770       TCGA-67-3771 
"ZNF268 WILD-TYPE" "ZNF268 WILD-TYPE" "ZNF268 WILD-TYPE" "ZNF268 WILD-TYPE" 
      TCGA-67-3772       TCGA-67-3773       TCGA-67-3774       TCGA-67-6215 
"ZNF268 WILD-TYPE" "ZNF268 WILD-TYPE" "ZNF268 WILD-TYPE" "ZNF268 WILD-TYPE" 
      TCGA-67-6216       TCGA-67-6217       TCGA-71-6725       TCGA-73-4658 
"ZNF268 WILD-TYPE" "ZNF268 WILD-TYPE" "ZNF268 WILD-TYPE" "ZNF268 WILD-TYPE" 
      TCGA-73-4659       TCGA-73-4662       TCGA-73-4666       TCGA-73-4668 
"ZNF268 WILD-TYPE" "ZNF268 WILD-TYPE" "ZNF268 WILD-TYPE" "ZNF268 WILD-TYPE" 
      TCGA-73-4670       TCGA-73-4675       TCGA-73-4676       TCGA-73-4677 
"ZNF268 WILD-TYPE" "ZNF268 WILD-TYPE" "ZNF268 WILD-TYPE" "ZNF268 WILD-TYPE" 
      TCGA-91-6828       TCGA-91-6829       TCGA-91-6831       TCGA-91-6835 
"ZNF268 WILD-TYPE" "ZNF268 WILD-TYPE" "ZNF268 WILD-TYPE" "ZNF268 WILD-TYPE" 
      TCGA-91-6836 
"ZNF268 WILD-TYPE" 
[1] "hr=" "2.2"
D54V2, continuous
D54V3, binary
[1] "tbl2"
                  cls
clus               [,1] [,2]
  ZNF268 MUTATED      1    4
  ZNF268 WILD-TYPE   92   75
        clus
vv       ZNF268 MUTATED ZNF268 WILD-TYPE
  FEMALE              1               92
  MALE                4               75
D54V4, continuous
D54V5, multiclass
D54V6, multiclass
    clus
vv   ZNF268 MUTATED ZNF268 WILD-TYPE
  T1              1               40
  T2              4              104
  T3              0               14
  T4              0                8
D54V7, multiclass
       clus
vv      ZNF268 MUTATED ZNF268 WILD-TYPE
  N0                 3               92
  N1                 1               36
  N2+N3              1               34
D54V8, multiclass
    clus
vv   ZNF268 MUTATED ZNF268 WILD-TYPE
  M0              4              133
  M1              1                8
  MX              0               22
D54V9, multiclass
     clus
vv    ZNF268 MUTATED ZNF268 WILD-TYPE
  I                3               85
  II               1               32
  III              0               39
  IV               1                8
D54V10, binary
[1] "tbl2"
                  cls
clus               [,1] [,2]
  ZNF268 MUTATED      0    5
  ZNF268 WILD-TYPE   16  151
     clus
vv    ZNF268 MUTATED ZNF268 WILD-TYPE
  NO               0               16
  YES              5              151
D54V11, continuous
D54V12, continuous
D54V13, multiclass
                                             clus
vv                                            ZNF268 MUTATED ZNF268 WILD-TYPE
  CURRENT REFORMED SMOKER FOR < OR = 15 YEARS              3               59
  CURRENT REFORMED SMOKER FOR > 15 YEARS                   1               45
  CURRENT SMOKER                                           1               27
  LIFELONG NON-SMOKER                                      0               24
D54V14, continuous

Clustering(55) Variable = TBX15 MUTATION ANALYSIS
D55V1, survival
                 sevent
clus2              0  1
  TBX15 MUTATED    4  6
  TBX15 WILD-TYPE 95 44
  TBX15 MUTATED TBX15 WILD-TYPE 
             10             139 
  TBX15 MUTATED TBX15 WILD-TYPE 
              6              44 
$`TBX15 MUTATED`
TCGA-05-4396 TCGA-05-4398 TCGA-05-4427 TCGA-38-4630 TCGA-38-4632 TCGA-44-2666 
        9.96        47.05        26.01        35.28        44.61         3.19 
TCGA-49-4488 TCGA-64-5779 TCGA-73-4662 TCGA-91-6829 
       28.57        16.67        29.95        41.33 

$`TBX15 WILD-TYPE`
TCGA-05-4249 TCGA-05-4250 TCGA-05-4382 TCGA-05-4384 TCGA-05-4390 TCGA-05-4397 
       38.07         3.98        19.92        14.01        37.02        24.03 
TCGA-05-4402 TCGA-05-4405 TCGA-05-4415 TCGA-05-4417 TCGA-05-4418 TCGA-05-4420 
        8.02        20.05         2.96        14.93         8.98        29.95 
TCGA-05-4424 TCGA-05-4426 TCGA-05-4430 TCGA-05-4432 TCGA-05-4433 TCGA-05-4434 
       30.02        26.01        25.02        25.02        24.00        15.02 
TCGA-05-5420 TCGA-05-5423 TCGA-05-5425 TCGA-05-5429 TCGA-05-5715 TCGA-35-3615 
        1.02         4.96         2.96         0.99         2.04         0.46 
TCGA-35-4122 TCGA-35-4123 TCGA-35-5375 TCGA-38-4625 TCGA-38-4626 TCGA-38-4627 
        7.36         5.95         8.68        47.61        85.32        37.71 
TCGA-38-4628 TCGA-38-4629 TCGA-38-4631 TCGA-38-6178 TCGA-44-2655 TCGA-44-2656 
       49.02        28.37        11.64         5.19        18.87        19.10 
TCGA-44-2657 TCGA-44-2659 TCGA-44-2661 TCGA-44-2662 TCGA-44-2665 TCGA-44-2668 
       13.15        17.39         3.39        15.78        13.15         8.09 
TCGA-44-3396 TCGA-44-3398 TCGA-44-3918 TCGA-44-3919 TCGA-44-4112 TCGA-44-5643 
       10.22         8.32         6.44         6.21         4.60         3.48 
TCGA-44-5645 TCGA-44-6144 TCGA-44-6145 TCGA-44-6146 TCGA-44-6147 TCGA-44-6148 
        6.84         0.30         3.35         9.93         7.76         3.12 
TCGA-44-6774 TCGA-44-6775 TCGA-44-6776 TCGA-44-6777 TCGA-44-6778 TCGA-44-6779 
        5.42         2.70        63.72        32.45        36.49        16.41 
TCGA-49-4486 TCGA-49-4487 TCGA-49-4490 TCGA-49-4494 TCGA-49-4501 TCGA-49-4505 
       76.21        28.11        12.66        35.54        46.72        14.07 
TCGA-49-4506 TCGA-49-4507 TCGA-49-4510 TCGA-49-4512 TCGA-49-4514 TCGA-49-6742 
       32.84         8.81        29.46        29.75        43.20        15.02 
TCGA-49-6743 TCGA-49-6744 TCGA-49-6745 TCGA-50-5044 TCGA-50-5045 TCGA-50-5049 
       12.13        12.99         4.93        20.48        71.47        48.82 
TCGA-50-5051 TCGA-50-5055 TCGA-50-5066 TCGA-50-5068 TCGA-50-5072 TCGA-50-5930 
       14.96        25.81         9.76        49.28         8.05         9.27 
TCGA-50-5931 TCGA-50-5932 TCGA-50-5933 TCGA-50-5935 TCGA-50-5936 TCGA-50-5939 
        8.78        35.87        77.88        21.47         8.45        15.12 
TCGA-50-5941 TCGA-50-5942 TCGA-50-5944 TCGA-50-5946 TCGA-50-6590 TCGA-50-6591 
        9.37         4.44        12.26        11.47        42.31         3.88 
TCGA-50-6592 TCGA-50-6593 TCGA-50-6594 TCGA-50-6595 TCGA-50-6597 TCGA-55-1592 
       25.51        11.05        12.16         6.21        33.37        23.05 
TCGA-55-1594 TCGA-55-1595 TCGA-55-1596 TCGA-55-5899 TCGA-55-6543 TCGA-55-6642 
       38.73        48.62        45.17         2.86         0.07        32.61 
TCGA-55-6712 TCGA-64-1676 TCGA-64-1677 TCGA-64-1678 TCGA-64-1680 TCGA-64-5774 
        0.79        56.81        20.65        39.09        37.02        83.84 
TCGA-64-5775 TCGA-64-5778 TCGA-64-5781 TCGA-64-5815 TCGA-67-3770 TCGA-67-3771 
        0.10        30.44        39.52         7.33         0.99         1.97 
TCGA-67-3772 TCGA-67-3773 TCGA-67-3774 TCGA-67-6215 TCGA-67-6216 TCGA-67-6217 
        0.59         2.04         0.59         0.89         0.69        13.87 
TCGA-71-6725 TCGA-73-4658 TCGA-73-4659 TCGA-73-4666 TCGA-73-4668 TCGA-73-4670 
        2.01        52.57        23.38        20.28        15.35         0.46 
TCGA-73-4675 TCGA-73-4676 TCGA-73-4677 TCGA-91-6828 TCGA-91-6831 TCGA-91-6835 
        1.32         4.01         1.25         1.22         1.28         1.15 
TCGA-91-6836 
        0.36 

  TBX15 MUTATED TBX15 WILD-TYPE 
           3.19            0.07 
  TBX15 MUTATED TBX15 WILD-TYPE 
          47.05           85.32 
  TBX15 MUTATED TBX15 WILD-TYPE 
          29.26           12.99 
[1] "3.2 - 47.0 (29.3)" "0.1 - 85.3 (13.0)"
     TCGA-05-4249      TCGA-05-4250      TCGA-05-4382      TCGA-05-4384 
"TBX15 WILD-TYPE" "TBX15 WILD-TYPE" "TBX15 WILD-TYPE" "TBX15 WILD-TYPE" 
     TCGA-05-4390      TCGA-05-4396      TCGA-05-4397      TCGA-05-4398 
"TBX15 WILD-TYPE"   "TBX15 MUTATED" "TBX15 WILD-TYPE"   "TBX15 MUTATED" 
     TCGA-05-4402      TCGA-05-4405      TCGA-05-4415      TCGA-05-4417 
"TBX15 WILD-TYPE" "TBX15 WILD-TYPE" "TBX15 WILD-TYPE" "TBX15 WILD-TYPE" 
     TCGA-05-4418      TCGA-05-4420      TCGA-05-4424      TCGA-05-4426 
"TBX15 WILD-TYPE" "TBX15 WILD-TYPE" "TBX15 WILD-TYPE" "TBX15 WILD-TYPE" 
     TCGA-05-4427      TCGA-05-4430      TCGA-05-4432      TCGA-05-4433 
  "TBX15 MUTATED" "TBX15 WILD-TYPE" "TBX15 WILD-TYPE" "TBX15 WILD-TYPE" 
     TCGA-05-4434      TCGA-05-5420      TCGA-05-5423      TCGA-05-5425 
"TBX15 WILD-TYPE" "TBX15 WILD-TYPE" "TBX15 WILD-TYPE" "TBX15 WILD-TYPE" 
     TCGA-05-5429      TCGA-05-5715      TCGA-35-3615      TCGA-35-4122 
"TBX15 WILD-TYPE" "TBX15 WILD-TYPE" "TBX15 WILD-TYPE" "TBX15 WILD-TYPE" 
     TCGA-35-4123      TCGA-35-5375      TCGA-38-4625      TCGA-38-4626 
"TBX15 WILD-TYPE" "TBX15 WILD-TYPE" "TBX15 WILD-TYPE" "TBX15 WILD-TYPE" 
     TCGA-38-4627      TCGA-38-4628      TCGA-38-4629      TCGA-38-4630 
"TBX15 WILD-TYPE" "TBX15 WILD-TYPE" "TBX15 WILD-TYPE"   "TBX15 MUTATED" 
     TCGA-38-4631      TCGA-38-4632      TCGA-38-6178      TCGA-44-2655 
"TBX15 WILD-TYPE"   "TBX15 MUTATED" "TBX15 WILD-TYPE" "TBX15 WILD-TYPE" 
     TCGA-44-2656      TCGA-44-2657      TCGA-44-2659      TCGA-44-2661 
"TBX15 WILD-TYPE" "TBX15 WILD-TYPE" "TBX15 WILD-TYPE" "TBX15 WILD-TYPE" 
     TCGA-44-2662      TCGA-44-2665      TCGA-44-2666      TCGA-44-2668 
"TBX15 WILD-TYPE" "TBX15 WILD-TYPE"   "TBX15 MUTATED" "TBX15 WILD-TYPE" 
     TCGA-44-3396      TCGA-44-3398      TCGA-44-3918      TCGA-44-3919 
"TBX15 WILD-TYPE" "TBX15 WILD-TYPE" "TBX15 WILD-TYPE" "TBX15 WILD-TYPE" 
     TCGA-44-4112      TCGA-44-5643      TCGA-44-5645      TCGA-44-6144 
"TBX15 WILD-TYPE" "TBX15 WILD-TYPE" "TBX15 WILD-TYPE" "TBX15 WILD-TYPE" 
     TCGA-44-6145      TCGA-44-6146      TCGA-44-6147      TCGA-44-6148 
"TBX15 WILD-TYPE" "TBX15 WILD-TYPE" "TBX15 WILD-TYPE" "TBX15 WILD-TYPE" 
     TCGA-44-6774      TCGA-44-6775      TCGA-44-6776      TCGA-44-6777 
"TBX15 WILD-TYPE" "TBX15 WILD-TYPE" "TBX15 WILD-TYPE" "TBX15 WILD-TYPE" 
     TCGA-44-6778      TCGA-44-6779      TCGA-49-4486      TCGA-49-4487 
"TBX15 WILD-TYPE" "TBX15 WILD-TYPE" "TBX15 WILD-TYPE" "TBX15 WILD-TYPE" 
     TCGA-49-4488      TCGA-49-4490      TCGA-49-4494      TCGA-49-4501 
  "TBX15 MUTATED" "TBX15 WILD-TYPE" "TBX15 WILD-TYPE" "TBX15 WILD-TYPE" 
     TCGA-49-4505      TCGA-49-4506      TCGA-49-4507      TCGA-49-4510 
"TBX15 WILD-TYPE" "TBX15 WILD-TYPE" "TBX15 WILD-TYPE" "TBX15 WILD-TYPE" 
     TCGA-49-4512      TCGA-49-4514      TCGA-49-6742      TCGA-49-6743 
"TBX15 WILD-TYPE" "TBX15 WILD-TYPE" "TBX15 WILD-TYPE" "TBX15 WILD-TYPE" 
     TCGA-49-6744      TCGA-49-6745      TCGA-50-5044      TCGA-50-5045 
"TBX15 WILD-TYPE" "TBX15 WILD-TYPE" "TBX15 WILD-TYPE" "TBX15 WILD-TYPE" 
     TCGA-50-5049      TCGA-50-5051      TCGA-50-5055      TCGA-50-5066 
"TBX15 WILD-TYPE" "TBX15 WILD-TYPE" "TBX15 WILD-TYPE" "TBX15 WILD-TYPE" 
     TCGA-50-5068      TCGA-50-5072      TCGA-50-5930      TCGA-50-5931 
"TBX15 WILD-TYPE" "TBX15 WILD-TYPE" "TBX15 WILD-TYPE" "TBX15 WILD-TYPE" 
     TCGA-50-5932      TCGA-50-5933      TCGA-50-5935      TCGA-50-5936 
"TBX15 WILD-TYPE" "TBX15 WILD-TYPE" "TBX15 WILD-TYPE" "TBX15 WILD-TYPE" 
     TCGA-50-5939      TCGA-50-5941      TCGA-50-5942      TCGA-50-5944 
"TBX15 WILD-TYPE" "TBX15 WILD-TYPE" "TBX15 WILD-TYPE" "TBX15 WILD-TYPE" 
     TCGA-50-5946      TCGA-50-6590      TCGA-50-6591      TCGA-50-6592 
"TBX15 WILD-TYPE" "TBX15 WILD-TYPE" "TBX15 WILD-TYPE" "TBX15 WILD-TYPE" 
     TCGA-50-6593      TCGA-50-6594      TCGA-50-6595      TCGA-50-6597 
"TBX15 WILD-TYPE" "TBX15 WILD-TYPE" "TBX15 WILD-TYPE" "TBX15 WILD-TYPE" 
     TCGA-55-1592      TCGA-55-1594      TCGA-55-1595      TCGA-55-1596 
"TBX15 WILD-TYPE" "TBX15 WILD-TYPE" "TBX15 WILD-TYPE" "TBX15 WILD-TYPE" 
     TCGA-55-5899      TCGA-55-6543      TCGA-55-6642      TCGA-55-6712 
"TBX15 WILD-TYPE" "TBX15 WILD-TYPE" "TBX15 WILD-TYPE" "TBX15 WILD-TYPE" 
     TCGA-64-1676      TCGA-64-1677      TCGA-64-1678      TCGA-64-1680 
"TBX15 WILD-TYPE" "TBX15 WILD-TYPE" "TBX15 WILD-TYPE" "TBX15 WILD-TYPE" 
     TCGA-64-5774      TCGA-64-5775      TCGA-64-5778      TCGA-64-5779 
"TBX15 WILD-TYPE" "TBX15 WILD-TYPE" "TBX15 WILD-TYPE"   "TBX15 MUTATED" 
     TCGA-64-5781      TCGA-64-5815      TCGA-67-3770      TCGA-67-3771 
"TBX15 WILD-TYPE" "TBX15 WILD-TYPE" "TBX15 WILD-TYPE" "TBX15 WILD-TYPE" 
     TCGA-67-3772      TCGA-67-3773      TCGA-67-3774      TCGA-67-6215 
"TBX15 WILD-TYPE" "TBX15 WILD-TYPE" "TBX15 WILD-TYPE" "TBX15 WILD-TYPE" 
     TCGA-67-6216      TCGA-67-6217      TCGA-71-6725      TCGA-73-4658 
"TBX15 WILD-TYPE" "TBX15 WILD-TYPE" "TBX15 WILD-TYPE" "TBX15 WILD-TYPE" 
     TCGA-73-4659      TCGA-73-4662      TCGA-73-4666      TCGA-73-4668 
"TBX15 WILD-TYPE"   "TBX15 MUTATED" "TBX15 WILD-TYPE" "TBX15 WILD-TYPE" 
     TCGA-73-4670      TCGA-73-4675      TCGA-73-4676      TCGA-73-4677 
"TBX15 WILD-TYPE" "TBX15 WILD-TYPE" "TBX15 WILD-TYPE" "TBX15 WILD-TYPE" 
     TCGA-91-6828      TCGA-91-6829      TCGA-91-6831      TCGA-91-6835 
"TBX15 WILD-TYPE"   "TBX15 MUTATED" "TBX15 WILD-TYPE" "TBX15 WILD-TYPE" 
     TCGA-91-6836 
"TBX15 WILD-TYPE" 
     TCGA-05-4249      TCGA-05-4250      TCGA-05-4382      TCGA-05-4384 
"TBX15 WILD-TYPE" "TBX15 WILD-TYPE" "TBX15 WILD-TYPE" "TBX15 WILD-TYPE" 
     TCGA-05-4390      TCGA-05-4396      TCGA-05-4397      TCGA-05-4398 
"TBX15 WILD-TYPE"   "TBX15 MUTATED" "TBX15 WILD-TYPE"   "TBX15 MUTATED" 
     TCGA-05-4402      TCGA-05-4405      TCGA-05-4415      TCGA-05-4417 
"TBX15 WILD-TYPE" "TBX15 WILD-TYPE" "TBX15 WILD-TYPE" "TBX15 WILD-TYPE" 
     TCGA-05-4418      TCGA-05-4420      TCGA-05-4424      TCGA-05-4426 
"TBX15 WILD-TYPE" "TBX15 WILD-TYPE" "TBX15 WILD-TYPE" "TBX15 WILD-TYPE" 
     TCGA-05-4427      TCGA-05-4430      TCGA-05-4432      TCGA-05-4433 
  "TBX15 MUTATED" "TBX15 WILD-TYPE" "TBX15 WILD-TYPE" "TBX15 WILD-TYPE" 
     TCGA-05-4434      TCGA-05-5420      TCGA-05-5423      TCGA-05-5425 
"TBX15 WILD-TYPE" "TBX15 WILD-TYPE" "TBX15 WILD-TYPE" "TBX15 WILD-TYPE" 
     TCGA-05-5429      TCGA-05-5715      TCGA-35-3615      TCGA-35-4122 
"TBX15 WILD-TYPE" "TBX15 WILD-TYPE" "TBX15 WILD-TYPE" "TBX15 WILD-TYPE" 
     TCGA-35-4123      TCGA-35-5375      TCGA-38-4625      TCGA-38-4626 
"TBX15 WILD-TYPE" "TBX15 WILD-TYPE" "TBX15 WILD-TYPE" "TBX15 WILD-TYPE" 
     TCGA-38-4627      TCGA-38-4628      TCGA-38-4629      TCGA-38-4630 
"TBX15 WILD-TYPE" "TBX15 WILD-TYPE" "TBX15 WILD-TYPE"   "TBX15 MUTATED" 
     TCGA-38-4631      TCGA-38-4632      TCGA-38-6178      TCGA-44-2655 
"TBX15 WILD-TYPE"   "TBX15 MUTATED" "TBX15 WILD-TYPE" "TBX15 WILD-TYPE" 
     TCGA-44-2656      TCGA-44-2657      TCGA-44-2659      TCGA-44-2661 
"TBX15 WILD-TYPE" "TBX15 WILD-TYPE" "TBX15 WILD-TYPE" "TBX15 WILD-TYPE" 
     TCGA-44-2662      TCGA-44-2665      TCGA-44-2666      TCGA-44-2668 
"TBX15 WILD-TYPE" "TBX15 WILD-TYPE"   "TBX15 MUTATED" "TBX15 WILD-TYPE" 
     TCGA-44-3396      TCGA-44-3398      TCGA-44-3918      TCGA-44-3919 
"TBX15 WILD-TYPE" "TBX15 WILD-TYPE" "TBX15 WILD-TYPE" "TBX15 WILD-TYPE" 
     TCGA-44-4112      TCGA-44-5643      TCGA-44-5645      TCGA-44-6144 
"TBX15 WILD-TYPE" "TBX15 WILD-TYPE" "TBX15 WILD-TYPE" "TBX15 WILD-TYPE" 
     TCGA-44-6145      TCGA-44-6146      TCGA-44-6147      TCGA-44-6148 
"TBX15 WILD-TYPE" "TBX15 WILD-TYPE" "TBX15 WILD-TYPE" "TBX15 WILD-TYPE" 
     TCGA-44-6774      TCGA-44-6775      TCGA-44-6776      TCGA-44-6777 
"TBX15 WILD-TYPE" "TBX15 WILD-TYPE" "TBX15 WILD-TYPE" "TBX15 WILD-TYPE" 
     TCGA-44-6778      TCGA-44-6779      TCGA-49-4486      TCGA-49-4487 
"TBX15 WILD-TYPE" "TBX15 WILD-TYPE" "TBX15 WILD-TYPE" "TBX15 WILD-TYPE" 
     TCGA-49-4488      TCGA-49-4490      TCGA-49-4494      TCGA-49-4501 
  "TBX15 MUTATED" "TBX15 WILD-TYPE" "TBX15 WILD-TYPE" "TBX15 WILD-TYPE" 
     TCGA-49-4505      TCGA-49-4506      TCGA-49-4507      TCGA-49-4510 
"TBX15 WILD-TYPE" "TBX15 WILD-TYPE" "TBX15 WILD-TYPE" "TBX15 WILD-TYPE" 
     TCGA-49-4512      TCGA-49-4514      TCGA-49-6742      TCGA-49-6743 
"TBX15 WILD-TYPE" "TBX15 WILD-TYPE" "TBX15 WILD-TYPE" "TBX15 WILD-TYPE" 
     TCGA-49-6744      TCGA-49-6745      TCGA-50-5044      TCGA-50-5045 
"TBX15 WILD-TYPE" "TBX15 WILD-TYPE" "TBX15 WILD-TYPE" "TBX15 WILD-TYPE" 
     TCGA-50-5049      TCGA-50-5051      TCGA-50-5055      TCGA-50-5066 
"TBX15 WILD-TYPE" "TBX15 WILD-TYPE" "TBX15 WILD-TYPE" "TBX15 WILD-TYPE" 
     TCGA-50-5068      TCGA-50-5072      TCGA-50-5930      TCGA-50-5931 
"TBX15 WILD-TYPE" "TBX15 WILD-TYPE" "TBX15 WILD-TYPE" "TBX15 WILD-TYPE" 
     TCGA-50-5932      TCGA-50-5933      TCGA-50-5935      TCGA-50-5936 
"TBX15 WILD-TYPE" "TBX15 WILD-TYPE" "TBX15 WILD-TYPE" "TBX15 WILD-TYPE" 
     TCGA-50-5939      TCGA-50-5941      TCGA-50-5942      TCGA-50-5944 
"TBX15 WILD-TYPE" "TBX15 WILD-TYPE" "TBX15 WILD-TYPE" "TBX15 WILD-TYPE" 
     TCGA-50-5946      TCGA-50-6590      TCGA-50-6591      TCGA-50-6592 
"TBX15 WILD-TYPE" "TBX15 WILD-TYPE" "TBX15 WILD-TYPE" "TBX15 WILD-TYPE" 
     TCGA-50-6593      TCGA-50-6594      TCGA-50-6595      TCGA-50-6597 
"TBX15 WILD-TYPE" "TBX15 WILD-TYPE" "TBX15 WILD-TYPE" "TBX15 WILD-TYPE" 
     TCGA-55-1592      TCGA-55-1594      TCGA-55-1595      TCGA-55-1596 
"TBX15 WILD-TYPE" "TBX15 WILD-TYPE" "TBX15 WILD-TYPE" "TBX15 WILD-TYPE" 
     TCGA-55-5899      TCGA-55-6543      TCGA-55-6642      TCGA-55-6712 
"TBX15 WILD-TYPE" "TBX15 WILD-TYPE" "TBX15 WILD-TYPE" "TBX15 WILD-TYPE" 
     TCGA-64-1676      TCGA-64-1677      TCGA-64-1678      TCGA-64-1680 
"TBX15 WILD-TYPE" "TBX15 WILD-TYPE" "TBX15 WILD-TYPE" "TBX15 WILD-TYPE" 
     TCGA-64-5774      TCGA-64-5775      TCGA-64-5778      TCGA-64-5779 
"TBX15 WILD-TYPE" "TBX15 WILD-TYPE" "TBX15 WILD-TYPE"   "TBX15 MUTATED" 
     TCGA-64-5781      TCGA-64-5815      TCGA-67-3770      TCGA-67-3771 
"TBX15 WILD-TYPE" "TBX15 WILD-TYPE" "TBX15 WILD-TYPE" "TBX15 WILD-TYPE" 
     TCGA-67-3772      TCGA-67-3773      TCGA-67-3774      TCGA-67-6215 
"TBX15 WILD-TYPE" "TBX15 WILD-TYPE" "TBX15 WILD-TYPE" "TBX15 WILD-TYPE" 
     TCGA-67-6216      TCGA-67-6217      TCGA-71-6725      TCGA-73-4658 
"TBX15 WILD-TYPE" "TBX15 WILD-TYPE" "TBX15 WILD-TYPE" "TBX15 WILD-TYPE" 
     TCGA-73-4659      TCGA-73-4662      TCGA-73-4666      TCGA-73-4668 
"TBX15 WILD-TYPE"   "TBX15 MUTATED" "TBX15 WILD-TYPE" "TBX15 WILD-TYPE" 
     TCGA-73-4670      TCGA-73-4675      TCGA-73-4676      TCGA-73-4677 
"TBX15 WILD-TYPE" "TBX15 WILD-TYPE" "TBX15 WILD-TYPE" "TBX15 WILD-TYPE" 
     TCGA-91-6828      TCGA-91-6829      TCGA-91-6831      TCGA-91-6835 
"TBX15 WILD-TYPE"   "TBX15 MUTATED" "TBX15 WILD-TYPE" "TBX15 WILD-TYPE" 
     TCGA-91-6836 
"TBX15 WILD-TYPE" 
     TCGA-05-4249      TCGA-05-4250      TCGA-05-4382      TCGA-05-4384 
"TBX15 WILD-TYPE" "TBX15 WILD-TYPE" "TBX15 WILD-TYPE" "TBX15 WILD-TYPE" 
     TCGA-05-4390      TCGA-05-4396      TCGA-05-4397      TCGA-05-4398 
"TBX15 WILD-TYPE"   "TBX15 MUTATED" "TBX15 WILD-TYPE"   "TBX15 MUTATED" 
     TCGA-05-4402      TCGA-05-4405      TCGA-05-4415      TCGA-05-4417 
"TBX15 WILD-TYPE" "TBX15 WILD-TYPE" "TBX15 WILD-TYPE" "TBX15 WILD-TYPE" 
     TCGA-05-4418      TCGA-05-4420      TCGA-05-4424      TCGA-05-4426 
"TBX15 WILD-TYPE" "TBX15 WILD-TYPE" "TBX15 WILD-TYPE" "TBX15 WILD-TYPE" 
     TCGA-05-4427      TCGA-05-4430      TCGA-05-4432      TCGA-05-4433 
  "TBX15 MUTATED" "TBX15 WILD-TYPE" "TBX15 WILD-TYPE" "TBX15 WILD-TYPE" 
     TCGA-05-4434      TCGA-05-5420      TCGA-05-5423      TCGA-05-5425 
"TBX15 WILD-TYPE" "TBX15 WILD-TYPE" "TBX15 WILD-TYPE" "TBX15 WILD-TYPE" 
     TCGA-05-5429      TCGA-05-5715      TCGA-35-3615      TCGA-35-4122 
"TBX15 WILD-TYPE" "TBX15 WILD-TYPE" "TBX15 WILD-TYPE" "TBX15 WILD-TYPE" 
     TCGA-35-4123      TCGA-35-5375      TCGA-38-4625      TCGA-38-4626 
"TBX15 WILD-TYPE" "TBX15 WILD-TYPE" "TBX15 WILD-TYPE" "TBX15 WILD-TYPE" 
     TCGA-38-4627      TCGA-38-4628      TCGA-38-4629      TCGA-38-4630 
"TBX15 WILD-TYPE" "TBX15 WILD-TYPE" "TBX15 WILD-TYPE"   "TBX15 MUTATED" 
     TCGA-38-4631      TCGA-38-4632      TCGA-38-6178      TCGA-44-2655 
"TBX15 WILD-TYPE"   "TBX15 MUTATED" "TBX15 WILD-TYPE" "TBX15 WILD-TYPE" 
     TCGA-44-2656      TCGA-44-2657      TCGA-44-2659      TCGA-44-2661 
"TBX15 WILD-TYPE" "TBX15 WILD-TYPE" "TBX15 WILD-TYPE" "TBX15 WILD-TYPE" 
     TCGA-44-2662      TCGA-44-2665      TCGA-44-2666      TCGA-44-2668 
"TBX15 WILD-TYPE" "TBX15 WILD-TYPE"   "TBX15 MUTATED" "TBX15 WILD-TYPE" 
     TCGA-44-3396      TCGA-44-3398      TCGA-44-3918      TCGA-44-3919 
"TBX15 WILD-TYPE" "TBX15 WILD-TYPE" "TBX15 WILD-TYPE" "TBX15 WILD-TYPE" 
     TCGA-44-4112      TCGA-44-5643      TCGA-44-5645      TCGA-44-6144 
"TBX15 WILD-TYPE" "TBX15 WILD-TYPE" "TBX15 WILD-TYPE" "TBX15 WILD-TYPE" 
     TCGA-44-6145      TCGA-44-6146      TCGA-44-6147      TCGA-44-6148 
"TBX15 WILD-TYPE" "TBX15 WILD-TYPE" "TBX15 WILD-TYPE" "TBX15 WILD-TYPE" 
     TCGA-44-6774      TCGA-44-6775      TCGA-44-6776      TCGA-44-6777 
"TBX15 WILD-TYPE" "TBX15 WILD-TYPE" "TBX15 WILD-TYPE" "TBX15 WILD-TYPE" 
     TCGA-44-6778      TCGA-44-6779      TCGA-49-4486      TCGA-49-4487 
"TBX15 WILD-TYPE" "TBX15 WILD-TYPE" "TBX15 WILD-TYPE" "TBX15 WILD-TYPE" 
     TCGA-49-4488      TCGA-49-4490      TCGA-49-4494      TCGA-49-4501 
  "TBX15 MUTATED" "TBX15 WILD-TYPE" "TBX15 WILD-TYPE" "TBX15 WILD-TYPE" 
     TCGA-49-4505      TCGA-49-4506      TCGA-49-4507      TCGA-49-4510 
"TBX15 WILD-TYPE" "TBX15 WILD-TYPE" "TBX15 WILD-TYPE" "TBX15 WILD-TYPE" 
     TCGA-49-4512      TCGA-49-4514      TCGA-49-6742      TCGA-49-6743 
"TBX15 WILD-TYPE" "TBX15 WILD-TYPE" "TBX15 WILD-TYPE" "TBX15 WILD-TYPE" 
     TCGA-49-6744      TCGA-49-6745      TCGA-50-5044      TCGA-50-5045 
"TBX15 WILD-TYPE" "TBX15 WILD-TYPE" "TBX15 WILD-TYPE" "TBX15 WILD-TYPE" 
     TCGA-50-5049      TCGA-50-5051      TCGA-50-5055      TCGA-50-5066 
"TBX15 WILD-TYPE" "TBX15 WILD-TYPE" "TBX15 WILD-TYPE" "TBX15 WILD-TYPE" 
     TCGA-50-5068      TCGA-50-5072      TCGA-50-5930      TCGA-50-5931 
"TBX15 WILD-TYPE" "TBX15 WILD-TYPE" "TBX15 WILD-TYPE" "TBX15 WILD-TYPE" 
     TCGA-50-5932      TCGA-50-5933      TCGA-50-5935      TCGA-50-5936 
"TBX15 WILD-TYPE" "TBX15 WILD-TYPE" "TBX15 WILD-TYPE" "TBX15 WILD-TYPE" 
     TCGA-50-5939      TCGA-50-5941      TCGA-50-5942      TCGA-50-5944 
"TBX15 WILD-TYPE" "TBX15 WILD-TYPE" "TBX15 WILD-TYPE" "TBX15 WILD-TYPE" 
     TCGA-50-5946      TCGA-50-6590      TCGA-50-6591      TCGA-50-6592 
"TBX15 WILD-TYPE" "TBX15 WILD-TYPE" "TBX15 WILD-TYPE" "TBX15 WILD-TYPE" 
     TCGA-50-6593      TCGA-50-6594      TCGA-50-6595      TCGA-50-6597 
"TBX15 WILD-TYPE" "TBX15 WILD-TYPE" "TBX15 WILD-TYPE" "TBX15 WILD-TYPE" 
     TCGA-55-1592      TCGA-55-1594      TCGA-55-1595      TCGA-55-1596 
"TBX15 WILD-TYPE" "TBX15 WILD-TYPE" "TBX15 WILD-TYPE" "TBX15 WILD-TYPE" 
     TCGA-55-5899      TCGA-55-6543      TCGA-55-6642      TCGA-55-6712 
"TBX15 WILD-TYPE" "TBX15 WILD-TYPE" "TBX15 WILD-TYPE" "TBX15 WILD-TYPE" 
     TCGA-64-1676      TCGA-64-1677      TCGA-64-1678      TCGA-64-1680 
"TBX15 WILD-TYPE" "TBX15 WILD-TYPE" "TBX15 WILD-TYPE" "TBX15 WILD-TYPE" 
     TCGA-64-5774      TCGA-64-5775      TCGA-64-5778      TCGA-64-5779 
"TBX15 WILD-TYPE" "TBX15 WILD-TYPE" "TBX15 WILD-TYPE"   "TBX15 MUTATED" 
     TCGA-64-5781      TCGA-64-5815      TCGA-67-3770      TCGA-67-3771 
"TBX15 WILD-TYPE" "TBX15 WILD-TYPE" "TBX15 WILD-TYPE" "TBX15 WILD-TYPE" 
     TCGA-67-3772      TCGA-67-3773      TCGA-67-3774      TCGA-67-6215 
"TBX15 WILD-TYPE" "TBX15 WILD-TYPE" "TBX15 WILD-TYPE" "TBX15 WILD-TYPE" 
     TCGA-67-6216      TCGA-67-6217      TCGA-71-6725      TCGA-73-4658 
"TBX15 WILD-TYPE" "TBX15 WILD-TYPE" "TBX15 WILD-TYPE" "TBX15 WILD-TYPE" 
     TCGA-73-4659      TCGA-73-4662      TCGA-73-4666      TCGA-73-4668 
"TBX15 WILD-TYPE"   "TBX15 MUTATED" "TBX15 WILD-TYPE" "TBX15 WILD-TYPE" 
     TCGA-73-4670      TCGA-73-4675      TCGA-73-4676      TCGA-73-4677 
"TBX15 WILD-TYPE" "TBX15 WILD-TYPE" "TBX15 WILD-TYPE" "TBX15 WILD-TYPE" 
     TCGA-91-6828      TCGA-91-6829      TCGA-91-6831      TCGA-91-6835 
"TBX15 WILD-TYPE"   "TBX15 MUTATED" "TBX15 WILD-TYPE" "TBX15 WILD-TYPE" 
     TCGA-91-6836 
"TBX15 WILD-TYPE" 
[1] "hr=" "1.3"
D55V2, continuous
D55V3, binary
[1] "tbl2"
                 cls
clus              [,1] [,2]
  TBX15 MUTATED      5    6
  TBX15 WILD-TYPE   88   73
        clus
vv       TBX15 MUTATED TBX15 WILD-TYPE
  FEMALE             5              88
  MALE               6              73
D55V4, continuous
[1] "Remove cluster labels:" "TBX15 MUTATED"         
clus
  TBX15 MUTATED TBX15 WILD-TYPE 
              1              11 
     TCGA-35-4122      TCGA-35-4123      TCGA-35-5375      TCGA-64-1677 
"TBX15 WILD-TYPE" "TBX15 WILD-TYPE" "TBX15 WILD-TYPE" "TBX15 WILD-TYPE" 
     TCGA-64-5778      TCGA-71-6725      TCGA-73-4659      TCGA-73-4666 
"TBX15 WILD-TYPE" "TBX15 WILD-TYPE" "TBX15 WILD-TYPE" "TBX15 WILD-TYPE" 
     TCGA-73-4668      TCGA-73-4676      TCGA-75-5122 
"TBX15 WILD-TYPE" "TBX15 WILD-TYPE" "TBX15 WILD-TYPE" 
D55V5, multiclass
D55V6, multiclass
    clus
vv   TBX15 MUTATED TBX15 WILD-TYPE
  T1             2              39
  T2             6             102
  T3             0              14
  T4             3               5
D55V7, multiclass
       clus
vv      TBX15 MUTATED TBX15 WILD-TYPE
  N0                5              90
  N1                3              34
  N2+N3             3              32
D55V8, multiclass
    clus
vv   TBX15 MUTATED TBX15 WILD-TYPE
  M0             7             130
  M1             1               8
  MX             2              20
D55V9, multiclass
     clus
vv    TBX15 MUTATED TBX15 WILD-TYPE
  I               5              83
  II              1              32
  III             4              35
  IV              1               8
D55V10, binary
[1] "tbl2"
                 cls
clus              [,1] [,2]
  TBX15 MUTATED      1   10
  TBX15 WILD-TYPE   15  146
     clus
vv    TBX15 MUTATED TBX15 WILD-TYPE
  NO              1              15
  YES            10             146
D55V11, continuous
D55V12, continuous
D55V13, multiclass
                                             clus
vv                                            TBX15 MUTATED TBX15 WILD-TYPE
  CURRENT REFORMED SMOKER FOR < OR = 15 YEARS             4              58
  CURRENT REFORMED SMOKER FOR > 15 YEARS                  3              43
  CURRENT SMOKER                                          2              26
  LIFELONG NON-SMOKER                                     2              22
D55V14, continuous

Clustering(56) Variable = MAGEB18 MUTATION ANALYSIS
D56V1, survival
                   sevent
clus2                0  1
  MAGEB18 MUTATED    3  2
  MAGEB18 WILD-TYPE 96 48
  MAGEB18 MUTATED MAGEB18 WILD-TYPE 
                5               144 
  MAGEB18 MUTATED MAGEB18 WILD-TYPE 
                2                48 
$`MAGEB18 MUTATED`
TCGA-44-2657 TCGA-44-3396 TCGA-44-6774 TCGA-44-6777 TCGA-50-6592 
       13.15        10.22         5.42        32.45        25.51 

$`MAGEB18 WILD-TYPE`
TCGA-05-4249 TCGA-05-4250 TCGA-05-4382 TCGA-05-4384 TCGA-05-4390 TCGA-05-4396 
       38.07         3.98        19.92        14.01        37.02         9.96 
TCGA-05-4397 TCGA-05-4398 TCGA-05-4402 TCGA-05-4405 TCGA-05-4415 TCGA-05-4417 
       24.03        47.05         8.02        20.05         2.96        14.93 
TCGA-05-4418 TCGA-05-4420 TCGA-05-4424 TCGA-05-4426 TCGA-05-4427 TCGA-05-4430 
        8.98        29.95        30.02        26.01        26.01        25.02 
TCGA-05-4432 TCGA-05-4433 TCGA-05-4434 TCGA-05-5420 TCGA-05-5423 TCGA-05-5425 
       25.02        24.00        15.02         1.02         4.96         2.96 
TCGA-05-5429 TCGA-05-5715 TCGA-35-3615 TCGA-35-4122 TCGA-35-4123 TCGA-35-5375 
        0.99         2.04         0.46         7.36         5.95         8.68 
TCGA-38-4625 TCGA-38-4626 TCGA-38-4627 TCGA-38-4628 TCGA-38-4629 TCGA-38-4630 
       47.61        85.32        37.71        49.02        28.37        35.28 
TCGA-38-4631 TCGA-38-4632 TCGA-38-6178 TCGA-44-2655 TCGA-44-2656 TCGA-44-2659 
       11.64        44.61         5.19        18.87        19.10        17.39 
TCGA-44-2661 TCGA-44-2662 TCGA-44-2665 TCGA-44-2666 TCGA-44-2668 TCGA-44-3398 
        3.39        15.78        13.15         3.19         8.09         8.32 
TCGA-44-3918 TCGA-44-3919 TCGA-44-4112 TCGA-44-5643 TCGA-44-5645 TCGA-44-6144 
        6.44         6.21         4.60         3.48         6.84         0.30 
TCGA-44-6145 TCGA-44-6146 TCGA-44-6147 TCGA-44-6148 TCGA-44-6775 TCGA-44-6776 
        3.35         9.93         7.76         3.12         2.70        63.72 
TCGA-44-6778 TCGA-44-6779 TCGA-49-4486 TCGA-49-4487 TCGA-49-4488 TCGA-49-4490 
       36.49        16.41        76.21        28.11        28.57        12.66 
TCGA-49-4494 TCGA-49-4501 TCGA-49-4505 TCGA-49-4506 TCGA-49-4507 TCGA-49-4510 
       35.54        46.72        14.07        32.84         8.81        29.46 
TCGA-49-4512 TCGA-49-4514 TCGA-49-6742 TCGA-49-6743 TCGA-49-6744 TCGA-49-6745 
       29.75        43.20        15.02        12.13        12.99         4.93 
TCGA-50-5044 TCGA-50-5045 TCGA-50-5049 TCGA-50-5051 TCGA-50-5055 TCGA-50-5066 
       20.48        71.47        48.82        14.96        25.81         9.76 
TCGA-50-5068 TCGA-50-5072 TCGA-50-5930 TCGA-50-5931 TCGA-50-5932 TCGA-50-5933 
       49.28         8.05         9.27         8.78        35.87        77.88 
TCGA-50-5935 TCGA-50-5936 TCGA-50-5939 TCGA-50-5941 TCGA-50-5942 TCGA-50-5944 
       21.47         8.45        15.12         9.37         4.44        12.26 
TCGA-50-5946 TCGA-50-6590 TCGA-50-6591 TCGA-50-6593 TCGA-50-6594 TCGA-50-6595 
       11.47        42.31         3.88        11.05        12.16         6.21 
TCGA-50-6597 TCGA-55-1592 TCGA-55-1594 TCGA-55-1595 TCGA-55-1596 TCGA-55-5899 
       33.37        23.05        38.73        48.62        45.17         2.86 
TCGA-55-6543 TCGA-55-6642 TCGA-55-6712 TCGA-64-1676 TCGA-64-1677 TCGA-64-1678 
        0.07        32.61         0.79        56.81        20.65        39.09 
TCGA-64-1680 TCGA-64-5774 TCGA-64-5775 TCGA-64-5778 TCGA-64-5779 TCGA-64-5781 
       37.02        83.84         0.10        30.44        16.67        39.52 
TCGA-64-5815 TCGA-67-3770 TCGA-67-3771 TCGA-67-3772 TCGA-67-3773 TCGA-67-3774 
        7.33         0.99         1.97         0.59         2.04         0.59 
TCGA-67-6215 TCGA-67-6216 TCGA-67-6217 TCGA-71-6725 TCGA-73-4658 TCGA-73-4659 
        0.89         0.69        13.87         2.01        52.57        23.38 
TCGA-73-4662 TCGA-73-4666 TCGA-73-4668 TCGA-73-4670 TCGA-73-4675 TCGA-73-4676 
       29.95        20.28        15.35         0.46         1.32         4.01 
TCGA-73-4677 TCGA-91-6828 TCGA-91-6829 TCGA-91-6831 TCGA-91-6835 TCGA-91-6836 
        1.25         1.22        41.33         1.28         1.15         0.36 

  MAGEB18 MUTATED MAGEB18 WILD-TYPE 
             5.42              0.07 
  MAGEB18 MUTATED MAGEB18 WILD-TYPE 
            32.45             85.32 
  MAGEB18 MUTATED MAGEB18 WILD-TYPE 
            13.15             13.94 
[1] "5.4 - 32.5 (13.2)" "0.1 - 85.3 (13.9)"
       TCGA-05-4249        TCGA-05-4250        TCGA-05-4382        TCGA-05-4384 
"MAGEB18 WILD-TYPE" "MAGEB18 WILD-TYPE" "MAGEB18 WILD-TYPE" "MAGEB18 WILD-TYPE" 
       TCGA-05-4390        TCGA-05-4396        TCGA-05-4397        TCGA-05-4398 
"MAGEB18 WILD-TYPE" "MAGEB18 WILD-TYPE" "MAGEB18 WILD-TYPE" "MAGEB18 WILD-TYPE" 
       TCGA-05-4402        TCGA-05-4405        TCGA-05-4415        TCGA-05-4417 
"MAGEB18 WILD-TYPE" "MAGEB18 WILD-TYPE" "MAGEB18 WILD-TYPE" "MAGEB18 WILD-TYPE" 
       TCGA-05-4418        TCGA-05-4420        TCGA-05-4424        TCGA-05-4426 
"MAGEB18 WILD-TYPE" "MAGEB18 WILD-TYPE" "MAGEB18 WILD-TYPE" "MAGEB18 WILD-TYPE" 
       TCGA-05-4427        TCGA-05-4430        TCGA-05-4432        TCGA-05-4433 
"MAGEB18 WILD-TYPE" "MAGEB18 WILD-TYPE" "MAGEB18 WILD-TYPE" "MAGEB18 WILD-TYPE" 
       TCGA-05-4434        TCGA-05-5420        TCGA-05-5423        TCGA-05-5425 
"MAGEB18 WILD-TYPE" "MAGEB18 WILD-TYPE" "MAGEB18 WILD-TYPE" "MAGEB18 WILD-TYPE" 
       TCGA-05-5429        TCGA-05-5715        TCGA-35-3615        TCGA-35-4122 
"MAGEB18 WILD-TYPE" "MAGEB18 WILD-TYPE" "MAGEB18 WILD-TYPE" "MAGEB18 WILD-TYPE" 
       TCGA-35-4123        TCGA-35-5375        TCGA-38-4625        TCGA-38-4626 
"MAGEB18 WILD-TYPE" "MAGEB18 WILD-TYPE" "MAGEB18 WILD-TYPE" "MAGEB18 WILD-TYPE" 
       TCGA-38-4627        TCGA-38-4628        TCGA-38-4629        TCGA-38-4630 
"MAGEB18 WILD-TYPE" "MAGEB18 WILD-TYPE" "MAGEB18 WILD-TYPE" "MAGEB18 WILD-TYPE" 
       TCGA-38-4631        TCGA-38-4632        TCGA-38-6178        TCGA-44-2655 
"MAGEB18 WILD-TYPE" "MAGEB18 WILD-TYPE" "MAGEB18 WILD-TYPE" "MAGEB18 WILD-TYPE" 
       TCGA-44-2656        TCGA-44-2657        TCGA-44-2659        TCGA-44-2661 
"MAGEB18 WILD-TYPE"   "MAGEB18 MUTATED" "MAGEB18 WILD-TYPE" "MAGEB18 WILD-TYPE" 
       TCGA-44-2662        TCGA-44-2665        TCGA-44-2666        TCGA-44-2668 
"MAGEB18 WILD-TYPE" "MAGEB18 WILD-TYPE" "MAGEB18 WILD-TYPE" "MAGEB18 WILD-TYPE" 
       TCGA-44-3396        TCGA-44-3398        TCGA-44-3918        TCGA-44-3919 
  "MAGEB18 MUTATED" "MAGEB18 WILD-TYPE" "MAGEB18 WILD-TYPE" "MAGEB18 WILD-TYPE" 
       TCGA-44-4112        TCGA-44-5643        TCGA-44-5645        TCGA-44-6144 
"MAGEB18 WILD-TYPE" "MAGEB18 WILD-TYPE" "MAGEB18 WILD-TYPE" "MAGEB18 WILD-TYPE" 
       TCGA-44-6145        TCGA-44-6146        TCGA-44-6147        TCGA-44-6148 
"MAGEB18 WILD-TYPE" "MAGEB18 WILD-TYPE" "MAGEB18 WILD-TYPE" "MAGEB18 WILD-TYPE" 
       TCGA-44-6774        TCGA-44-6775        TCGA-44-6776        TCGA-44-6777 
  "MAGEB18 MUTATED" "MAGEB18 WILD-TYPE" "MAGEB18 WILD-TYPE"   "MAGEB18 MUTATED" 
       TCGA-44-6778        TCGA-44-6779        TCGA-49-4486        TCGA-49-4487 
"MAGEB18 WILD-TYPE" "MAGEB18 WILD-TYPE" "MAGEB18 WILD-TYPE" "MAGEB18 WILD-TYPE" 
       TCGA-49-4488        TCGA-49-4490        TCGA-49-4494        TCGA-49-4501 
"MAGEB18 WILD-TYPE" "MAGEB18 WILD-TYPE" "MAGEB18 WILD-TYPE" "MAGEB18 WILD-TYPE" 
       TCGA-49-4505        TCGA-49-4506        TCGA-49-4507        TCGA-49-4510 
"MAGEB18 WILD-TYPE" "MAGEB18 WILD-TYPE" "MAGEB18 WILD-TYPE" "MAGEB18 WILD-TYPE" 
       TCGA-49-4512        TCGA-49-4514        TCGA-49-6742        TCGA-49-6743 
"MAGEB18 WILD-TYPE" "MAGEB18 WILD-TYPE" "MAGEB18 WILD-TYPE" "MAGEB18 WILD-TYPE" 
       TCGA-49-6744        TCGA-49-6745        TCGA-50-5044        TCGA-50-5045 
"MAGEB18 WILD-TYPE" "MAGEB18 WILD-TYPE" "MAGEB18 WILD-TYPE" "MAGEB18 WILD-TYPE" 
       TCGA-50-5049        TCGA-50-5051        TCGA-50-5055        TCGA-50-5066 
"MAGEB18 WILD-TYPE" "MAGEB18 WILD-TYPE" "MAGEB18 WILD-TYPE" "MAGEB18 WILD-TYPE" 
       TCGA-50-5068        TCGA-50-5072        TCGA-50-5930        TCGA-50-5931 
"MAGEB18 WILD-TYPE" "MAGEB18 WILD-TYPE" "MAGEB18 WILD-TYPE" "MAGEB18 WILD-TYPE" 
       TCGA-50-5932        TCGA-50-5933        TCGA-50-5935        TCGA-50-5936 
"MAGEB18 WILD-TYPE" "MAGEB18 WILD-TYPE" "MAGEB18 WILD-TYPE" "MAGEB18 WILD-TYPE" 
       TCGA-50-5939        TCGA-50-5941        TCGA-50-5942        TCGA-50-5944 
"MAGEB18 WILD-TYPE" "MAGEB18 WILD-TYPE" "MAGEB18 WILD-TYPE" "MAGEB18 WILD-TYPE" 
       TCGA-50-5946        TCGA-50-6590        TCGA-50-6591        TCGA-50-6592 
"MAGEB18 WILD-TYPE" "MAGEB18 WILD-TYPE" "MAGEB18 WILD-TYPE"   "MAGEB18 MUTATED" 
       TCGA-50-6593        TCGA-50-6594        TCGA-50-6595        TCGA-50-6597 
"MAGEB18 WILD-TYPE" "MAGEB18 WILD-TYPE" "MAGEB18 WILD-TYPE" "MAGEB18 WILD-TYPE" 
       TCGA-55-1592        TCGA-55-1594        TCGA-55-1595        TCGA-55-1596 
"MAGEB18 WILD-TYPE" "MAGEB18 WILD-TYPE" "MAGEB18 WILD-TYPE" "MAGEB18 WILD-TYPE" 
       TCGA-55-5899        TCGA-55-6543        TCGA-55-6642        TCGA-55-6712 
"MAGEB18 WILD-TYPE" "MAGEB18 WILD-TYPE" "MAGEB18 WILD-TYPE" "MAGEB18 WILD-TYPE" 
       TCGA-64-1676        TCGA-64-1677        TCGA-64-1678        TCGA-64-1680 
"MAGEB18 WILD-TYPE" "MAGEB18 WILD-TYPE" "MAGEB18 WILD-TYPE" "MAGEB18 WILD-TYPE" 
       TCGA-64-5774        TCGA-64-5775        TCGA-64-5778        TCGA-64-5779 
"MAGEB18 WILD-TYPE" "MAGEB18 WILD-TYPE" "MAGEB18 WILD-TYPE" "MAGEB18 WILD-TYPE" 
       TCGA-64-5781        TCGA-64-5815        TCGA-67-3770        TCGA-67-3771 
"MAGEB18 WILD-TYPE" "MAGEB18 WILD-TYPE" "MAGEB18 WILD-TYPE" "MAGEB18 WILD-TYPE" 
       TCGA-67-3772        TCGA-67-3773        TCGA-67-3774        TCGA-67-6215 
"MAGEB18 WILD-TYPE" "MAGEB18 WILD-TYPE" "MAGEB18 WILD-TYPE" "MAGEB18 WILD-TYPE" 
       TCGA-67-6216        TCGA-67-6217        TCGA-71-6725        TCGA-73-4658 
"MAGEB18 WILD-TYPE" "MAGEB18 WILD-TYPE" "MAGEB18 WILD-TYPE" "MAGEB18 WILD-TYPE" 
       TCGA-73-4659        TCGA-73-4662        TCGA-73-4666        TCGA-73-4668 
"MAGEB18 WILD-TYPE" "MAGEB18 WILD-TYPE" "MAGEB18 WILD-TYPE" "MAGEB18 WILD-TYPE" 
       TCGA-73-4670        TCGA-73-4675        TCGA-73-4676        TCGA-73-4677 
"MAGEB18 WILD-TYPE" "MAGEB18 WILD-TYPE" "MAGEB18 WILD-TYPE" "MAGEB18 WILD-TYPE" 
       TCGA-91-6828        TCGA-91-6829        TCGA-91-6831        TCGA-91-6835 
"MAGEB18 WILD-TYPE" "MAGEB18 WILD-TYPE" "MAGEB18 WILD-TYPE" "MAGEB18 WILD-TYPE" 
       TCGA-91-6836 
"MAGEB18 WILD-TYPE" 
       TCGA-05-4249        TCGA-05-4250        TCGA-05-4382        TCGA-05-4384 
"MAGEB18 WILD-TYPE" "MAGEB18 WILD-TYPE" "MAGEB18 WILD-TYPE" "MAGEB18 WILD-TYPE" 
       TCGA-05-4390        TCGA-05-4396        TCGA-05-4397        TCGA-05-4398 
"MAGEB18 WILD-TYPE" "MAGEB18 WILD-TYPE" "MAGEB18 WILD-TYPE" "MAGEB18 WILD-TYPE" 
       TCGA-05-4402        TCGA-05-4405        TCGA-05-4415        TCGA-05-4417 
"MAGEB18 WILD-TYPE" "MAGEB18 WILD-TYPE" "MAGEB18 WILD-TYPE" "MAGEB18 WILD-TYPE" 
       TCGA-05-4418        TCGA-05-4420        TCGA-05-4424        TCGA-05-4426 
"MAGEB18 WILD-TYPE" "MAGEB18 WILD-TYPE" "MAGEB18 WILD-TYPE" "MAGEB18 WILD-TYPE" 
       TCGA-05-4427        TCGA-05-4430        TCGA-05-4432        TCGA-05-4433 
"MAGEB18 WILD-TYPE" "MAGEB18 WILD-TYPE" "MAGEB18 WILD-TYPE" "MAGEB18 WILD-TYPE" 
       TCGA-05-4434        TCGA-05-5420        TCGA-05-5423        TCGA-05-5425 
"MAGEB18 WILD-TYPE" "MAGEB18 WILD-TYPE" "MAGEB18 WILD-TYPE" "MAGEB18 WILD-TYPE" 
       TCGA-05-5429        TCGA-05-5715        TCGA-35-3615        TCGA-35-4122 
"MAGEB18 WILD-TYPE" "MAGEB18 WILD-TYPE" "MAGEB18 WILD-TYPE" "MAGEB18 WILD-TYPE" 
       TCGA-35-4123        TCGA-35-5375        TCGA-38-4625        TCGA-38-4626 
"MAGEB18 WILD-TYPE" "MAGEB18 WILD-TYPE" "MAGEB18 WILD-TYPE" "MAGEB18 WILD-TYPE" 
       TCGA-38-4627        TCGA-38-4628        TCGA-38-4629        TCGA-38-4630 
"MAGEB18 WILD-TYPE" "MAGEB18 WILD-TYPE" "MAGEB18 WILD-TYPE" "MAGEB18 WILD-TYPE" 
       TCGA-38-4631        TCGA-38-4632        TCGA-38-6178        TCGA-44-2655 
"MAGEB18 WILD-TYPE" "MAGEB18 WILD-TYPE" "MAGEB18 WILD-TYPE" "MAGEB18 WILD-TYPE" 
       TCGA-44-2656        TCGA-44-2657        TCGA-44-2659        TCGA-44-2661 
"MAGEB18 WILD-TYPE"   "MAGEB18 MUTATED" "MAGEB18 WILD-TYPE" "MAGEB18 WILD-TYPE" 
       TCGA-44-2662        TCGA-44-2665        TCGA-44-2666        TCGA-44-2668 
"MAGEB18 WILD-TYPE" "MAGEB18 WILD-TYPE" "MAGEB18 WILD-TYPE" "MAGEB18 WILD-TYPE" 
       TCGA-44-3396        TCGA-44-3398        TCGA-44-3918        TCGA-44-3919 
  "MAGEB18 MUTATED" "MAGEB18 WILD-TYPE" "MAGEB18 WILD-TYPE" "MAGEB18 WILD-TYPE" 
       TCGA-44-4112        TCGA-44-5643        TCGA-44-5645        TCGA-44-6144 
"MAGEB18 WILD-TYPE" "MAGEB18 WILD-TYPE" "MAGEB18 WILD-TYPE" "MAGEB18 WILD-TYPE" 
       TCGA-44-6145        TCGA-44-6146        TCGA-44-6147        TCGA-44-6148 
"MAGEB18 WILD-TYPE" "MAGEB18 WILD-TYPE" "MAGEB18 WILD-TYPE" "MAGEB18 WILD-TYPE" 
       TCGA-44-6774        TCGA-44-6775        TCGA-44-6776        TCGA-44-6777 
  "MAGEB18 MUTATED" "MAGEB18 WILD-TYPE" "MAGEB18 WILD-TYPE"   "MAGEB18 MUTATED" 
       TCGA-44-6778        TCGA-44-6779        TCGA-49-4486        TCGA-49-4487 
"MAGEB18 WILD-TYPE" "MAGEB18 WILD-TYPE" "MAGEB18 WILD-TYPE" "MAGEB18 WILD-TYPE" 
       TCGA-49-4488        TCGA-49-4490        TCGA-49-4494        TCGA-49-4501 
"MAGEB18 WILD-TYPE" "MAGEB18 WILD-TYPE" "MAGEB18 WILD-TYPE" "MAGEB18 WILD-TYPE" 
       TCGA-49-4505        TCGA-49-4506        TCGA-49-4507        TCGA-49-4510 
"MAGEB18 WILD-TYPE" "MAGEB18 WILD-TYPE" "MAGEB18 WILD-TYPE" "MAGEB18 WILD-TYPE" 
       TCGA-49-4512        TCGA-49-4514        TCGA-49-6742        TCGA-49-6743 
"MAGEB18 WILD-TYPE" "MAGEB18 WILD-TYPE" "MAGEB18 WILD-TYPE" "MAGEB18 WILD-TYPE" 
       TCGA-49-6744        TCGA-49-6745        TCGA-50-5044        TCGA-50-5045 
"MAGEB18 WILD-TYPE" "MAGEB18 WILD-TYPE" "MAGEB18 WILD-TYPE" "MAGEB18 WILD-TYPE" 
       TCGA-50-5049        TCGA-50-5051        TCGA-50-5055        TCGA-50-5066 
"MAGEB18 WILD-TYPE" "MAGEB18 WILD-TYPE" "MAGEB18 WILD-TYPE" "MAGEB18 WILD-TYPE" 
       TCGA-50-5068        TCGA-50-5072        TCGA-50-5930        TCGA-50-5931 
"MAGEB18 WILD-TYPE" "MAGEB18 WILD-TYPE" "MAGEB18 WILD-TYPE" "MAGEB18 WILD-TYPE" 
       TCGA-50-5932        TCGA-50-5933        TCGA-50-5935        TCGA-50-5936 
"MAGEB18 WILD-TYPE" "MAGEB18 WILD-TYPE" "MAGEB18 WILD-TYPE" "MAGEB18 WILD-TYPE" 
       TCGA-50-5939        TCGA-50-5941        TCGA-50-5942        TCGA-50-5944 
"MAGEB18 WILD-TYPE" "MAGEB18 WILD-TYPE" "MAGEB18 WILD-TYPE" "MAGEB18 WILD-TYPE" 
       TCGA-50-5946        TCGA-50-6590        TCGA-50-6591        TCGA-50-6592 
"MAGEB18 WILD-TYPE" "MAGEB18 WILD-TYPE" "MAGEB18 WILD-TYPE"   "MAGEB18 MUTATED" 
       TCGA-50-6593        TCGA-50-6594        TCGA-50-6595        TCGA-50-6597 
"MAGEB18 WILD-TYPE" "MAGEB18 WILD-TYPE" "MAGEB18 WILD-TYPE" "MAGEB18 WILD-TYPE" 
       TCGA-55-1592        TCGA-55-1594        TCGA-55-1595        TCGA-55-1596 
"MAGEB18 WILD-TYPE" "MAGEB18 WILD-TYPE" "MAGEB18 WILD-TYPE" "MAGEB18 WILD-TYPE" 
       TCGA-55-5899        TCGA-55-6543        TCGA-55-6642        TCGA-55-6712 
"MAGEB18 WILD-TYPE" "MAGEB18 WILD-TYPE" "MAGEB18 WILD-TYPE" "MAGEB18 WILD-TYPE" 
       TCGA-64-1676        TCGA-64-1677        TCGA-64-1678        TCGA-64-1680 
"MAGEB18 WILD-TYPE" "MAGEB18 WILD-TYPE" "MAGEB18 WILD-TYPE" "MAGEB18 WILD-TYPE" 
       TCGA-64-5774        TCGA-64-5775        TCGA-64-5778        TCGA-64-5779 
"MAGEB18 WILD-TYPE" "MAGEB18 WILD-TYPE" "MAGEB18 WILD-TYPE" "MAGEB18 WILD-TYPE" 
       TCGA-64-5781        TCGA-64-5815        TCGA-67-3770        TCGA-67-3771 
"MAGEB18 WILD-TYPE" "MAGEB18 WILD-TYPE" "MAGEB18 WILD-TYPE" "MAGEB18 WILD-TYPE" 
       TCGA-67-3772        TCGA-67-3773        TCGA-67-3774        TCGA-67-6215 
"MAGEB18 WILD-TYPE" "MAGEB18 WILD-TYPE" "MAGEB18 WILD-TYPE" "MAGEB18 WILD-TYPE" 
       TCGA-67-6216        TCGA-67-6217        TCGA-71-6725        TCGA-73-4658 
"MAGEB18 WILD-TYPE" "MAGEB18 WILD-TYPE" "MAGEB18 WILD-TYPE" "MAGEB18 WILD-TYPE" 
       TCGA-73-4659        TCGA-73-4662        TCGA-73-4666        TCGA-73-4668 
"MAGEB18 WILD-TYPE" "MAGEB18 WILD-TYPE" "MAGEB18 WILD-TYPE" "MAGEB18 WILD-TYPE" 
       TCGA-73-4670        TCGA-73-4675        TCGA-73-4676        TCGA-73-4677 
"MAGEB18 WILD-TYPE" "MAGEB18 WILD-TYPE" "MAGEB18 WILD-TYPE" "MAGEB18 WILD-TYPE" 
       TCGA-91-6828        TCGA-91-6829        TCGA-91-6831        TCGA-91-6835 
"MAGEB18 WILD-TYPE" "MAGEB18 WILD-TYPE" "MAGEB18 WILD-TYPE" "MAGEB18 WILD-TYPE" 
       TCGA-91-6836 
"MAGEB18 WILD-TYPE" 
       TCGA-05-4249        TCGA-05-4250        TCGA-05-4382        TCGA-05-4384 
"MAGEB18 WILD-TYPE" "MAGEB18 WILD-TYPE" "MAGEB18 WILD-TYPE" "MAGEB18 WILD-TYPE" 
       TCGA-05-4390        TCGA-05-4396        TCGA-05-4397        TCGA-05-4398 
"MAGEB18 WILD-TYPE" "MAGEB18 WILD-TYPE" "MAGEB18 WILD-TYPE" "MAGEB18 WILD-TYPE" 
       TCGA-05-4402        TCGA-05-4405        TCGA-05-4415        TCGA-05-4417 
"MAGEB18 WILD-TYPE" "MAGEB18 WILD-TYPE" "MAGEB18 WILD-TYPE" "MAGEB18 WILD-TYPE" 
       TCGA-05-4418        TCGA-05-4420        TCGA-05-4424        TCGA-05-4426 
"MAGEB18 WILD-TYPE" "MAGEB18 WILD-TYPE" "MAGEB18 WILD-TYPE" "MAGEB18 WILD-TYPE" 
       TCGA-05-4427        TCGA-05-4430        TCGA-05-4432        TCGA-05-4433 
"MAGEB18 WILD-TYPE" "MAGEB18 WILD-TYPE" "MAGEB18 WILD-TYPE" "MAGEB18 WILD-TYPE" 
       TCGA-05-4434        TCGA-05-5420        TCGA-05-5423        TCGA-05-5425 
"MAGEB18 WILD-TYPE" "MAGEB18 WILD-TYPE" "MAGEB18 WILD-TYPE" "MAGEB18 WILD-TYPE" 
       TCGA-05-5429        TCGA-05-5715        TCGA-35-3615        TCGA-35-4122 
"MAGEB18 WILD-TYPE" "MAGEB18 WILD-TYPE" "MAGEB18 WILD-TYPE" "MAGEB18 WILD-TYPE" 
       TCGA-35-4123        TCGA-35-5375        TCGA-38-4625        TCGA-38-4626 
"MAGEB18 WILD-TYPE" "MAGEB18 WILD-TYPE" "MAGEB18 WILD-TYPE" "MAGEB18 WILD-TYPE" 
       TCGA-38-4627        TCGA-38-4628        TCGA-38-4629        TCGA-38-4630 
"MAGEB18 WILD-TYPE" "MAGEB18 WILD-TYPE" "MAGEB18 WILD-TYPE" "MAGEB18 WILD-TYPE" 
       TCGA-38-4631        TCGA-38-4632        TCGA-38-6178        TCGA-44-2655 
"MAGEB18 WILD-TYPE" "MAGEB18 WILD-TYPE" "MAGEB18 WILD-TYPE" "MAGEB18 WILD-TYPE" 
       TCGA-44-2656        TCGA-44-2657        TCGA-44-2659        TCGA-44-2661 
"MAGEB18 WILD-TYPE"   "MAGEB18 MUTATED" "MAGEB18 WILD-TYPE" "MAGEB18 WILD-TYPE" 
       TCGA-44-2662        TCGA-44-2665        TCGA-44-2666        TCGA-44-2668 
"MAGEB18 WILD-TYPE" "MAGEB18 WILD-TYPE" "MAGEB18 WILD-TYPE" "MAGEB18 WILD-TYPE" 
       TCGA-44-3396        TCGA-44-3398        TCGA-44-3918        TCGA-44-3919 
  "MAGEB18 MUTATED" "MAGEB18 WILD-TYPE" "MAGEB18 WILD-TYPE" "MAGEB18 WILD-TYPE" 
       TCGA-44-4112        TCGA-44-5643        TCGA-44-5645        TCGA-44-6144 
"MAGEB18 WILD-TYPE" "MAGEB18 WILD-TYPE" "MAGEB18 WILD-TYPE" "MAGEB18 WILD-TYPE" 
       TCGA-44-6145        TCGA-44-6146        TCGA-44-6147        TCGA-44-6148 
"MAGEB18 WILD-TYPE" "MAGEB18 WILD-TYPE" "MAGEB18 WILD-TYPE" "MAGEB18 WILD-TYPE" 
       TCGA-44-6774        TCGA-44-6775        TCGA-44-6776        TCGA-44-6777 
  "MAGEB18 MUTATED" "MAGEB18 WILD-TYPE" "MAGEB18 WILD-TYPE"   "MAGEB18 MUTATED" 
       TCGA-44-6778        TCGA-44-6779        TCGA-49-4486        TCGA-49-4487 
"MAGEB18 WILD-TYPE" "MAGEB18 WILD-TYPE" "MAGEB18 WILD-TYPE" "MAGEB18 WILD-TYPE" 
       TCGA-49-4488        TCGA-49-4490        TCGA-49-4494        TCGA-49-4501 
"MAGEB18 WILD-TYPE" "MAGEB18 WILD-TYPE" "MAGEB18 WILD-TYPE" "MAGEB18 WILD-TYPE" 
       TCGA-49-4505        TCGA-49-4506        TCGA-49-4507        TCGA-49-4510 
"MAGEB18 WILD-TYPE" "MAGEB18 WILD-TYPE" "MAGEB18 WILD-TYPE" "MAGEB18 WILD-TYPE" 
       TCGA-49-4512        TCGA-49-4514        TCGA-49-6742        TCGA-49-6743 
"MAGEB18 WILD-TYPE" "MAGEB18 WILD-TYPE" "MAGEB18 WILD-TYPE" "MAGEB18 WILD-TYPE" 
       TCGA-49-6744        TCGA-49-6745        TCGA-50-5044        TCGA-50-5045 
"MAGEB18 WILD-TYPE" "MAGEB18 WILD-TYPE" "MAGEB18 WILD-TYPE" "MAGEB18 WILD-TYPE" 
       TCGA-50-5049        TCGA-50-5051        TCGA-50-5055        TCGA-50-5066 
"MAGEB18 WILD-TYPE" "MAGEB18 WILD-TYPE" "MAGEB18 WILD-TYPE" "MAGEB18 WILD-TYPE" 
       TCGA-50-5068        TCGA-50-5072        TCGA-50-5930        TCGA-50-5931 
"MAGEB18 WILD-TYPE" "MAGEB18 WILD-TYPE" "MAGEB18 WILD-TYPE" "MAGEB18 WILD-TYPE" 
       TCGA-50-5932        TCGA-50-5933        TCGA-50-5935        TCGA-50-5936 
"MAGEB18 WILD-TYPE" "MAGEB18 WILD-TYPE" "MAGEB18 WILD-TYPE" "MAGEB18 WILD-TYPE" 
       TCGA-50-5939        TCGA-50-5941        TCGA-50-5942        TCGA-50-5944 
"MAGEB18 WILD-TYPE" "MAGEB18 WILD-TYPE" "MAGEB18 WILD-TYPE" "MAGEB18 WILD-TYPE" 
       TCGA-50-5946        TCGA-50-6590        TCGA-50-6591        TCGA-50-6592 
"MAGEB18 WILD-TYPE" "MAGEB18 WILD-TYPE" "MAGEB18 WILD-TYPE"   "MAGEB18 MUTATED" 
       TCGA-50-6593        TCGA-50-6594        TCGA-50-6595        TCGA-50-6597 
"MAGEB18 WILD-TYPE" "MAGEB18 WILD-TYPE" "MAGEB18 WILD-TYPE" "MAGEB18 WILD-TYPE" 
       TCGA-55-1592        TCGA-55-1594        TCGA-55-1595        TCGA-55-1596 
"MAGEB18 WILD-TYPE" "MAGEB18 WILD-TYPE" "MAGEB18 WILD-TYPE" "MAGEB18 WILD-TYPE" 
       TCGA-55-5899        TCGA-55-6543        TCGA-55-6642        TCGA-55-6712 
"MAGEB18 WILD-TYPE" "MAGEB18 WILD-TYPE" "MAGEB18 WILD-TYPE" "MAGEB18 WILD-TYPE" 
       TCGA-64-1676        TCGA-64-1677        TCGA-64-1678        TCGA-64-1680 
"MAGEB18 WILD-TYPE" "MAGEB18 WILD-TYPE" "MAGEB18 WILD-TYPE" "MAGEB18 WILD-TYPE" 
       TCGA-64-5774        TCGA-64-5775        TCGA-64-5778        TCGA-64-5779 
"MAGEB18 WILD-TYPE" "MAGEB18 WILD-TYPE" "MAGEB18 WILD-TYPE" "MAGEB18 WILD-TYPE" 
       TCGA-64-5781        TCGA-64-5815        TCGA-67-3770        TCGA-67-3771 
"MAGEB18 WILD-TYPE" "MAGEB18 WILD-TYPE" "MAGEB18 WILD-TYPE" "MAGEB18 WILD-TYPE" 
       TCGA-67-3772        TCGA-67-3773        TCGA-67-3774        TCGA-67-6215 
"MAGEB18 WILD-TYPE" "MAGEB18 WILD-TYPE" "MAGEB18 WILD-TYPE" "MAGEB18 WILD-TYPE" 
       TCGA-67-6216        TCGA-67-6217        TCGA-71-6725        TCGA-73-4658 
"MAGEB18 WILD-TYPE" "MAGEB18 WILD-TYPE" "MAGEB18 WILD-TYPE" "MAGEB18 WILD-TYPE" 
       TCGA-73-4659        TCGA-73-4662        TCGA-73-4666        TCGA-73-4668 
"MAGEB18 WILD-TYPE" "MAGEB18 WILD-TYPE" "MAGEB18 WILD-TYPE" "MAGEB18 WILD-TYPE" 
       TCGA-73-4670        TCGA-73-4675        TCGA-73-4676        TCGA-73-4677 
"MAGEB18 WILD-TYPE" "MAGEB18 WILD-TYPE" "MAGEB18 WILD-TYPE" "MAGEB18 WILD-TYPE" 
       TCGA-91-6828        TCGA-91-6829        TCGA-91-6831        TCGA-91-6835 
"MAGEB18 WILD-TYPE" "MAGEB18 WILD-TYPE" "MAGEB18 WILD-TYPE" "MAGEB18 WILD-TYPE" 
       TCGA-91-6836 
"MAGEB18 WILD-TYPE" 
[1] "hr=" "1.6"
D56V2, continuous
D56V3, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  MAGEB18 MUTATED      5    0
  MAGEB18 WILD-TYPE   88   79
        clus
vv       MAGEB18 MUTATED MAGEB18 WILD-TYPE
  FEMALE               5                88
  MALE                 0                79
D56V4, continuous
D56V5, multiclass
D56V6, multiclass
    clus
vv   MAGEB18 MUTATED MAGEB18 WILD-TYPE
  T1               1                40
  T2               4               104
  T3               0                14
  T4               0                 8
D56V7, multiclass
       clus
vv      MAGEB18 MUTATED MAGEB18 WILD-TYPE
  N0                  1                94
  N1                  0                37
  N2+N3               2                33
D56V8, multiclass
    clus
vv   MAGEB18 MUTATED MAGEB18 WILD-TYPE
  M0               4               133
  M1               0                 9
  MX               1                21
D56V9, multiclass
     clus
vv    MAGEB18 MUTATED MAGEB18 WILD-TYPE
  I                 3                85
  II                0                33
  III               2                37
  IV                0                 9
D56V10, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  MAGEB18 MUTATED      1    4
  MAGEB18 WILD-TYPE   15  152
     clus
vv    MAGEB18 MUTATED MAGEB18 WILD-TYPE
  NO                1                15
  YES               4               152
D56V11, continuous
D56V12, continuous
[1] "Remove cluster labels:" "MAGEB18 MUTATED"       
clus
  MAGEB18 MUTATED MAGEB18 WILD-TYPE 
                2                80 
       TCGA-05-4384        TCGA-05-4390        TCGA-05-4396        TCGA-05-4403 
"MAGEB18 WILD-TYPE" "MAGEB18 WILD-TYPE" "MAGEB18 WILD-TYPE" "MAGEB18 WILD-TYPE" 
       TCGA-05-4405        TCGA-05-4410        TCGA-05-4415        TCGA-05-4417 
"MAGEB18 WILD-TYPE" "MAGEB18 WILD-TYPE" "MAGEB18 WILD-TYPE" "MAGEB18 WILD-TYPE" 
       TCGA-05-4424        TCGA-05-4427        TCGA-05-4433        TCGA-05-5420 
"MAGEB18 WILD-TYPE" "MAGEB18 WILD-TYPE" "MAGEB18 WILD-TYPE" "MAGEB18 WILD-TYPE" 
       TCGA-05-5423        TCGA-05-5425        TCGA-05-5428        TCGA-35-4122 
"MAGEB18 WILD-TYPE" "MAGEB18 WILD-TYPE" "MAGEB18 WILD-TYPE" "MAGEB18 WILD-TYPE" 
       TCGA-35-4123        TCGA-35-5375        TCGA-38-4629        TCGA-38-4632 
"MAGEB18 WILD-TYPE" "MAGEB18 WILD-TYPE" "MAGEB18 WILD-TYPE" "MAGEB18 WILD-TYPE" 
       TCGA-44-2655        TCGA-44-2656        TCGA-44-2659        TCGA-44-2662 
"MAGEB18 WILD-TYPE" "MAGEB18 WILD-TYPE" "MAGEB18 WILD-TYPE" "MAGEB18 WILD-TYPE" 
       TCGA-44-2668        TCGA-44-3398        TCGA-44-3918        TCGA-44-4112 
"MAGEB18 WILD-TYPE" "MAGEB18 WILD-TYPE" "MAGEB18 WILD-TYPE" "MAGEB18 WILD-TYPE" 
       TCGA-44-5645        TCGA-44-6145        TCGA-44-6146        TCGA-44-6147 
"MAGEB18 WILD-TYPE" "MAGEB18 WILD-TYPE" "MAGEB18 WILD-TYPE" "MAGEB18 WILD-TYPE" 
       TCGA-44-6148        TCGA-44-6775        TCGA-44-6776        TCGA-44-6778 
"MAGEB18 WILD-TYPE" "MAGEB18 WILD-TYPE" "MAGEB18 WILD-TYPE" "MAGEB18 WILD-TYPE" 
       TCGA-44-6779        TCGA-49-4486        TCGA-49-4488        TCGA-49-4494 
"MAGEB18 WILD-TYPE" "MAGEB18 WILD-TYPE" "MAGEB18 WILD-TYPE" "MAGEB18 WILD-TYPE" 
       TCGA-49-4505        TCGA-49-4507        TCGA-50-5051        TCGA-50-5072 
"MAGEB18 WILD-TYPE" "MAGEB18 WILD-TYPE" "MAGEB18 WILD-TYPE" "MAGEB18 WILD-TYPE" 
       TCGA-50-5939        TCGA-50-5942        TCGA-50-5946        TCGA-50-6590 
"MAGEB18 WILD-TYPE" "MAGEB18 WILD-TYPE" "MAGEB18 WILD-TYPE" "MAGEB18 WILD-TYPE" 
       TCGA-50-6594        TCGA-50-6595        TCGA-55-1592        TCGA-55-1595 
"MAGEB18 WILD-TYPE" "MAGEB18 WILD-TYPE" "MAGEB18 WILD-TYPE" "MAGEB18 WILD-TYPE" 
       TCGA-55-6543        TCGA-55-6712        TCGA-64-1678        TCGA-64-1680 
"MAGEB18 WILD-TYPE" "MAGEB18 WILD-TYPE" "MAGEB18 WILD-TYPE" "MAGEB18 WILD-TYPE" 
       TCGA-64-5774        TCGA-64-5778        TCGA-64-5779        TCGA-64-5781 
"MAGEB18 WILD-TYPE" "MAGEB18 WILD-TYPE" "MAGEB18 WILD-TYPE" "MAGEB18 WILD-TYPE" 
       TCGA-64-5815        TCGA-67-6217        TCGA-73-4659        TCGA-73-4662 
"MAGEB18 WILD-TYPE" "MAGEB18 WILD-TYPE" "MAGEB18 WILD-TYPE" "MAGEB18 WILD-TYPE" 
       TCGA-73-4666        TCGA-73-4668        TCGA-73-4670        TCGA-73-4675 
"MAGEB18 WILD-TYPE" "MAGEB18 WILD-TYPE" "MAGEB18 WILD-TYPE" "MAGEB18 WILD-TYPE" 
       TCGA-73-4676        TCGA-73-4677        TCGA-75-5122        TCGA-75-5125 
"MAGEB18 WILD-TYPE" "MAGEB18 WILD-TYPE" "MAGEB18 WILD-TYPE" "MAGEB18 WILD-TYPE" 
       TCGA-75-5126        TCGA-75-5146        TCGA-75-6206        TCGA-75-6207 
"MAGEB18 WILD-TYPE" "MAGEB18 WILD-TYPE" "MAGEB18 WILD-TYPE" "MAGEB18 WILD-TYPE" 
       TCGA-80-5611        TCGA-91-6828        TCGA-91-6829        TCGA-91-6835 
"MAGEB18 WILD-TYPE" "MAGEB18 WILD-TYPE" "MAGEB18 WILD-TYPE" "MAGEB18 WILD-TYPE" 
D56V13, multiclass
                                             clus
vv                                            MAGEB18 MUTATED MAGEB18 WILD-TYPE
  CURRENT REFORMED SMOKER FOR < OR = 15 YEARS               3                59
  CURRENT REFORMED SMOKER FOR > 15 YEARS                    0                46
  CURRENT SMOKER                                            2                26
  LIFELONG NON-SMOKER                                       0                24
D56V14, continuous

Clustering(57) Variable = CXORF59 MUTATION ANALYSIS
D57V1, survival
                   sevent
clus2                0  1
  CXORF59 MUTATED    6  0
  CXORF59 WILD-TYPE 93 50
  CXORF59 MUTATED CXORF59 WILD-TYPE 
                6               143 
  CXORF59 MUTATED CXORF59 WILD-TYPE 
                0                50 
$`CXORF59 MUTATED`
TCGA-05-4382 TCGA-05-4430 TCGA-05-5420 TCGA-35-5375 TCGA-49-6744 TCGA-55-1595 
       19.92        25.02         1.02         8.68        12.99        48.62 

$`CXORF59 WILD-TYPE`
TCGA-05-4249 TCGA-05-4250 TCGA-05-4384 TCGA-05-4390 TCGA-05-4396 TCGA-05-4397 
       38.07         3.98        14.01        37.02         9.96        24.03 
TCGA-05-4398 TCGA-05-4402 TCGA-05-4405 TCGA-05-4415 TCGA-05-4417 TCGA-05-4418 
       47.05         8.02        20.05         2.96        14.93         8.98 
TCGA-05-4420 TCGA-05-4424 TCGA-05-4426 TCGA-05-4427 TCGA-05-4432 TCGA-05-4433 
       29.95        30.02        26.01        26.01        25.02        24.00 
TCGA-05-4434 TCGA-05-5423 TCGA-05-5425 TCGA-05-5429 TCGA-05-5715 TCGA-35-3615 
       15.02         4.96         2.96         0.99         2.04         0.46 
TCGA-35-4122 TCGA-35-4123 TCGA-38-4625 TCGA-38-4626 TCGA-38-4627 TCGA-38-4628 
        7.36         5.95        47.61        85.32        37.71        49.02 
TCGA-38-4629 TCGA-38-4630 TCGA-38-4631 TCGA-38-4632 TCGA-38-6178 TCGA-44-2655 
       28.37        35.28        11.64        44.61         5.19        18.87 
TCGA-44-2656 TCGA-44-2657 TCGA-44-2659 TCGA-44-2661 TCGA-44-2662 TCGA-44-2665 
       19.10        13.15        17.39         3.39        15.78        13.15 
TCGA-44-2666 TCGA-44-2668 TCGA-44-3396 TCGA-44-3398 TCGA-44-3918 TCGA-44-3919 
        3.19         8.09        10.22         8.32         6.44         6.21 
TCGA-44-4112 TCGA-44-5643 TCGA-44-5645 TCGA-44-6144 TCGA-44-6145 TCGA-44-6146 
        4.60         3.48         6.84         0.30         3.35         9.93 
TCGA-44-6147 TCGA-44-6148 TCGA-44-6774 TCGA-44-6775 TCGA-44-6776 TCGA-44-6777 
        7.76         3.12         5.42         2.70        63.72        32.45 
TCGA-44-6778 TCGA-44-6779 TCGA-49-4486 TCGA-49-4487 TCGA-49-4488 TCGA-49-4490 
       36.49        16.41        76.21        28.11        28.57        12.66 
TCGA-49-4494 TCGA-49-4501 TCGA-49-4505 TCGA-49-4506 TCGA-49-4507 TCGA-49-4510 
       35.54        46.72        14.07        32.84         8.81        29.46 
TCGA-49-4512 TCGA-49-4514 TCGA-49-6742 TCGA-49-6743 TCGA-49-6745 TCGA-50-5044 
       29.75        43.20        15.02        12.13         4.93        20.48 
TCGA-50-5045 TCGA-50-5049 TCGA-50-5051 TCGA-50-5055 TCGA-50-5066 TCGA-50-5068 
       71.47        48.82        14.96        25.81         9.76        49.28 
TCGA-50-5072 TCGA-50-5930 TCGA-50-5931 TCGA-50-5932 TCGA-50-5933 TCGA-50-5935 
        8.05         9.27         8.78        35.87        77.88        21.47 
TCGA-50-5936 TCGA-50-5939 TCGA-50-5941 TCGA-50-5942 TCGA-50-5944 TCGA-50-5946 
        8.45        15.12         9.37         4.44        12.26        11.47 
TCGA-50-6590 TCGA-50-6591 TCGA-50-6592 TCGA-50-6593 TCGA-50-6594 TCGA-50-6595 
       42.31         3.88        25.51        11.05        12.16         6.21 
TCGA-50-6597 TCGA-55-1592 TCGA-55-1594 TCGA-55-1596 TCGA-55-5899 TCGA-55-6543 
       33.37        23.05        38.73        45.17         2.86         0.07 
TCGA-55-6642 TCGA-55-6712 TCGA-64-1676 TCGA-64-1677 TCGA-64-1678 TCGA-64-1680 
       32.61         0.79        56.81        20.65        39.09        37.02 
TCGA-64-5774 TCGA-64-5775 TCGA-64-5778 TCGA-64-5779 TCGA-64-5781 TCGA-64-5815 
       83.84         0.10        30.44        16.67        39.52         7.33 
TCGA-67-3770 TCGA-67-3771 TCGA-67-3772 TCGA-67-3773 TCGA-67-3774 TCGA-67-6215 
        0.99         1.97         0.59         2.04         0.59         0.89 
TCGA-67-6216 TCGA-67-6217 TCGA-71-6725 TCGA-73-4658 TCGA-73-4659 TCGA-73-4662 
        0.69        13.87         2.01        52.57        23.38        29.95 
TCGA-73-4666 TCGA-73-4668 TCGA-73-4670 TCGA-73-4675 TCGA-73-4676 TCGA-73-4677 
       20.28        15.35         0.46         1.32         4.01         1.25 
TCGA-91-6828 TCGA-91-6829 TCGA-91-6831 TCGA-91-6835 TCGA-91-6836 
        1.22        41.33         1.28         1.15         0.36 

  CXORF59 MUTATED CXORF59 WILD-TYPE 
             1.02              0.07 
  CXORF59 MUTATED CXORF59 WILD-TYPE 
            48.62             85.32 
  CXORF59 MUTATED CXORF59 WILD-TYPE 
           16.455            13.870 
[1] "1.0 - 48.6 (16.5)" "0.1 - 85.3 (13.9)"
       TCGA-05-4249        TCGA-05-4250        TCGA-05-4382        TCGA-05-4384 
"CXORF59 WILD-TYPE" "CXORF59 WILD-TYPE"   "CXORF59 MUTATED" "CXORF59 WILD-TYPE" 
       TCGA-05-4390        TCGA-05-4396        TCGA-05-4397        TCGA-05-4398 
"CXORF59 WILD-TYPE" "CXORF59 WILD-TYPE" "CXORF59 WILD-TYPE" "CXORF59 WILD-TYPE" 
       TCGA-05-4402        TCGA-05-4405        TCGA-05-4415        TCGA-05-4417 
"CXORF59 WILD-TYPE" "CXORF59 WILD-TYPE" "CXORF59 WILD-TYPE" "CXORF59 WILD-TYPE" 
       TCGA-05-4418        TCGA-05-4420        TCGA-05-4424        TCGA-05-4426 
"CXORF59 WILD-TYPE" "CXORF59 WILD-TYPE" "CXORF59 WILD-TYPE" "CXORF59 WILD-TYPE" 
       TCGA-05-4427        TCGA-05-4430        TCGA-05-4432        TCGA-05-4433 
"CXORF59 WILD-TYPE"   "CXORF59 MUTATED" "CXORF59 WILD-TYPE" "CXORF59 WILD-TYPE" 
       TCGA-05-4434        TCGA-05-5420        TCGA-05-5423        TCGA-05-5425 
"CXORF59 WILD-TYPE"   "CXORF59 MUTATED" "CXORF59 WILD-TYPE" "CXORF59 WILD-TYPE" 
       TCGA-05-5429        TCGA-05-5715        TCGA-35-3615        TCGA-35-4122 
"CXORF59 WILD-TYPE" "CXORF59 WILD-TYPE" "CXORF59 WILD-TYPE" "CXORF59 WILD-TYPE" 
       TCGA-35-4123        TCGA-35-5375        TCGA-38-4625        TCGA-38-4626 
"CXORF59 WILD-TYPE"   "CXORF59 MUTATED" "CXORF59 WILD-TYPE" "CXORF59 WILD-TYPE" 
       TCGA-38-4627        TCGA-38-4628        TCGA-38-4629        TCGA-38-4630 
"CXORF59 WILD-TYPE" "CXORF59 WILD-TYPE" "CXORF59 WILD-TYPE" "CXORF59 WILD-TYPE" 
       TCGA-38-4631        TCGA-38-4632        TCGA-38-6178        TCGA-44-2655 
"CXORF59 WILD-TYPE" "CXORF59 WILD-TYPE" "CXORF59 WILD-TYPE" "CXORF59 WILD-TYPE" 
       TCGA-44-2656        TCGA-44-2657        TCGA-44-2659        TCGA-44-2661 
"CXORF59 WILD-TYPE" "CXORF59 WILD-TYPE" "CXORF59 WILD-TYPE" "CXORF59 WILD-TYPE" 
       TCGA-44-2662        TCGA-44-2665        TCGA-44-2666        TCGA-44-2668 
"CXORF59 WILD-TYPE" "CXORF59 WILD-TYPE" "CXORF59 WILD-TYPE" "CXORF59 WILD-TYPE" 
       TCGA-44-3396        TCGA-44-3398        TCGA-44-3918        TCGA-44-3919 
"CXORF59 WILD-TYPE" "CXORF59 WILD-TYPE" "CXORF59 WILD-TYPE" "CXORF59 WILD-TYPE" 
       TCGA-44-4112        TCGA-44-5643        TCGA-44-5645        TCGA-44-6144 
"CXORF59 WILD-TYPE" "CXORF59 WILD-TYPE" "CXORF59 WILD-TYPE" "CXORF59 WILD-TYPE" 
       TCGA-44-6145        TCGA-44-6146        TCGA-44-6147        TCGA-44-6148 
"CXORF59 WILD-TYPE" "CXORF59 WILD-TYPE" "CXORF59 WILD-TYPE" "CXORF59 WILD-TYPE" 
       TCGA-44-6774        TCGA-44-6775        TCGA-44-6776        TCGA-44-6777 
"CXORF59 WILD-TYPE" "CXORF59 WILD-TYPE" "CXORF59 WILD-TYPE" "CXORF59 WILD-TYPE" 
       TCGA-44-6778        TCGA-44-6779        TCGA-49-4486        TCGA-49-4487 
"CXORF59 WILD-TYPE" "CXORF59 WILD-TYPE" "CXORF59 WILD-TYPE" "CXORF59 WILD-TYPE" 
       TCGA-49-4488        TCGA-49-4490        TCGA-49-4494        TCGA-49-4501 
"CXORF59 WILD-TYPE" "CXORF59 WILD-TYPE" "CXORF59 WILD-TYPE" "CXORF59 WILD-TYPE" 
       TCGA-49-4505        TCGA-49-4506        TCGA-49-4507        TCGA-49-4510 
"CXORF59 WILD-TYPE" "CXORF59 WILD-TYPE" "CXORF59 WILD-TYPE" "CXORF59 WILD-TYPE" 
       TCGA-49-4512        TCGA-49-4514        TCGA-49-6742        TCGA-49-6743 
"CXORF59 WILD-TYPE" "CXORF59 WILD-TYPE" "CXORF59 WILD-TYPE" "CXORF59 WILD-TYPE" 
       TCGA-49-6744        TCGA-49-6745        TCGA-50-5044        TCGA-50-5045 
  "CXORF59 MUTATED" "CXORF59 WILD-TYPE" "CXORF59 WILD-TYPE" "CXORF59 WILD-TYPE" 
       TCGA-50-5049        TCGA-50-5051        TCGA-50-5055        TCGA-50-5066 
"CXORF59 WILD-TYPE" "CXORF59 WILD-TYPE" "CXORF59 WILD-TYPE" "CXORF59 WILD-TYPE" 
       TCGA-50-5068        TCGA-50-5072        TCGA-50-5930        TCGA-50-5931 
"CXORF59 WILD-TYPE" "CXORF59 WILD-TYPE" "CXORF59 WILD-TYPE" "CXORF59 WILD-TYPE" 
       TCGA-50-5932        TCGA-50-5933        TCGA-50-5935        TCGA-50-5936 
"CXORF59 WILD-TYPE" "CXORF59 WILD-TYPE" "CXORF59 WILD-TYPE" "CXORF59 WILD-TYPE" 
       TCGA-50-5939        TCGA-50-5941        TCGA-50-5942        TCGA-50-5944 
"CXORF59 WILD-TYPE" "CXORF59 WILD-TYPE" "CXORF59 WILD-TYPE" "CXORF59 WILD-TYPE" 
       TCGA-50-5946        TCGA-50-6590        TCGA-50-6591        TCGA-50-6592 
"CXORF59 WILD-TYPE" "CXORF59 WILD-TYPE" "CXORF59 WILD-TYPE" "CXORF59 WILD-TYPE" 
       TCGA-50-6593        TCGA-50-6594        TCGA-50-6595        TCGA-50-6597 
"CXORF59 WILD-TYPE" "CXORF59 WILD-TYPE" "CXORF59 WILD-TYPE" "CXORF59 WILD-TYPE" 
       TCGA-55-1592        TCGA-55-1594        TCGA-55-1595        TCGA-55-1596 
"CXORF59 WILD-TYPE" "CXORF59 WILD-TYPE"   "CXORF59 MUTATED" "CXORF59 WILD-TYPE" 
       TCGA-55-5899        TCGA-55-6543        TCGA-55-6642        TCGA-55-6712 
"CXORF59 WILD-TYPE" "CXORF59 WILD-TYPE" "CXORF59 WILD-TYPE" "CXORF59 WILD-TYPE" 
       TCGA-64-1676        TCGA-64-1677        TCGA-64-1678        TCGA-64-1680 
"CXORF59 WILD-TYPE" "CXORF59 WILD-TYPE" "CXORF59 WILD-TYPE" "CXORF59 WILD-TYPE" 
       TCGA-64-5774        TCGA-64-5775        TCGA-64-5778        TCGA-64-5779 
"CXORF59 WILD-TYPE" "CXORF59 WILD-TYPE" "CXORF59 WILD-TYPE" "CXORF59 WILD-TYPE" 
       TCGA-64-5781        TCGA-64-5815        TCGA-67-3770        TCGA-67-3771 
"CXORF59 WILD-TYPE" "CXORF59 WILD-TYPE" "CXORF59 WILD-TYPE" "CXORF59 WILD-TYPE" 
       TCGA-67-3772        TCGA-67-3773        TCGA-67-3774        TCGA-67-6215 
"CXORF59 WILD-TYPE" "CXORF59 WILD-TYPE" "CXORF59 WILD-TYPE" "CXORF59 WILD-TYPE" 
       TCGA-67-6216        TCGA-67-6217        TCGA-71-6725        TCGA-73-4658 
"CXORF59 WILD-TYPE" "CXORF59 WILD-TYPE" "CXORF59 WILD-TYPE" "CXORF59 WILD-TYPE" 
       TCGA-73-4659        TCGA-73-4662        TCGA-73-4666        TCGA-73-4668 
"CXORF59 WILD-TYPE" "CXORF59 WILD-TYPE" "CXORF59 WILD-TYPE" "CXORF59 WILD-TYPE" 
       TCGA-73-4670        TCGA-73-4675        TCGA-73-4676        TCGA-73-4677 
"CXORF59 WILD-TYPE" "CXORF59 WILD-TYPE" "CXORF59 WILD-TYPE" "CXORF59 WILD-TYPE" 
       TCGA-91-6828        TCGA-91-6829        TCGA-91-6831        TCGA-91-6835 
"CXORF59 WILD-TYPE" "CXORF59 WILD-TYPE" "CXORF59 WILD-TYPE" "CXORF59 WILD-TYPE" 
       TCGA-91-6836 
"CXORF59 WILD-TYPE" 
       TCGA-05-4249        TCGA-05-4250        TCGA-05-4382        TCGA-05-4384 
"CXORF59 WILD-TYPE" "CXORF59 WILD-TYPE"   "CXORF59 MUTATED" "CXORF59 WILD-TYPE" 
       TCGA-05-4390        TCGA-05-4396        TCGA-05-4397        TCGA-05-4398 
"CXORF59 WILD-TYPE" "CXORF59 WILD-TYPE" "CXORF59 WILD-TYPE" "CXORF59 WILD-TYPE" 
       TCGA-05-4402        TCGA-05-4405        TCGA-05-4415        TCGA-05-4417 
"CXORF59 WILD-TYPE" "CXORF59 WILD-TYPE" "CXORF59 WILD-TYPE" "CXORF59 WILD-TYPE" 
       TCGA-05-4418        TCGA-05-4420        TCGA-05-4424        TCGA-05-4426 
"CXORF59 WILD-TYPE" "CXORF59 WILD-TYPE" "CXORF59 WILD-TYPE" "CXORF59 WILD-TYPE" 
       TCGA-05-4427        TCGA-05-4430        TCGA-05-4432        TCGA-05-4433 
"CXORF59 WILD-TYPE"   "CXORF59 MUTATED" "CXORF59 WILD-TYPE" "CXORF59 WILD-TYPE" 
       TCGA-05-4434        TCGA-05-5420        TCGA-05-5423        TCGA-05-5425 
"CXORF59 WILD-TYPE"   "CXORF59 MUTATED" "CXORF59 WILD-TYPE" "CXORF59 WILD-TYPE" 
       TCGA-05-5429        TCGA-05-5715        TCGA-35-3615        TCGA-35-4122 
"CXORF59 WILD-TYPE" "CXORF59 WILD-TYPE" "CXORF59 WILD-TYPE" "CXORF59 WILD-TYPE" 
       TCGA-35-4123        TCGA-35-5375        TCGA-38-4625        TCGA-38-4626 
"CXORF59 WILD-TYPE"   "CXORF59 MUTATED" "CXORF59 WILD-TYPE" "CXORF59 WILD-TYPE" 
       TCGA-38-4627        TCGA-38-4628        TCGA-38-4629        TCGA-38-4630 
"CXORF59 WILD-TYPE" "CXORF59 WILD-TYPE" "CXORF59 WILD-TYPE" "CXORF59 WILD-TYPE" 
       TCGA-38-4631        TCGA-38-4632        TCGA-38-6178        TCGA-44-2655 
"CXORF59 WILD-TYPE" "CXORF59 WILD-TYPE" "CXORF59 WILD-TYPE" "CXORF59 WILD-TYPE" 
       TCGA-44-2656        TCGA-44-2657        TCGA-44-2659        TCGA-44-2661 
"CXORF59 WILD-TYPE" "CXORF59 WILD-TYPE" "CXORF59 WILD-TYPE" "CXORF59 WILD-TYPE" 
       TCGA-44-2662        TCGA-44-2665        TCGA-44-2666        TCGA-44-2668 
"CXORF59 WILD-TYPE" "CXORF59 WILD-TYPE" "CXORF59 WILD-TYPE" "CXORF59 WILD-TYPE" 
       TCGA-44-3396        TCGA-44-3398        TCGA-44-3918        TCGA-44-3919 
"CXORF59 WILD-TYPE" "CXORF59 WILD-TYPE" "CXORF59 WILD-TYPE" "CXORF59 WILD-TYPE" 
       TCGA-44-4112        TCGA-44-5643        TCGA-44-5645        TCGA-44-6144 
"CXORF59 WILD-TYPE" "CXORF59 WILD-TYPE" "CXORF59 WILD-TYPE" "CXORF59 WILD-TYPE" 
       TCGA-44-6145        TCGA-44-6146        TCGA-44-6147        TCGA-44-6148 
"CXORF59 WILD-TYPE" "CXORF59 WILD-TYPE" "CXORF59 WILD-TYPE" "CXORF59 WILD-TYPE" 
       TCGA-44-6774        TCGA-44-6775        TCGA-44-6776        TCGA-44-6777 
"CXORF59 WILD-TYPE" "CXORF59 WILD-TYPE" "CXORF59 WILD-TYPE" "CXORF59 WILD-TYPE" 
       TCGA-44-6778        TCGA-44-6779        TCGA-49-4486        TCGA-49-4487 
"CXORF59 WILD-TYPE" "CXORF59 WILD-TYPE" "CXORF59 WILD-TYPE" "CXORF59 WILD-TYPE" 
       TCGA-49-4488        TCGA-49-4490        TCGA-49-4494        TCGA-49-4501 
"CXORF59 WILD-TYPE" "CXORF59 WILD-TYPE" "CXORF59 WILD-TYPE" "CXORF59 WILD-TYPE" 
       TCGA-49-4505        TCGA-49-4506        TCGA-49-4507        TCGA-49-4510 
"CXORF59 WILD-TYPE" "CXORF59 WILD-TYPE" "CXORF59 WILD-TYPE" "CXORF59 WILD-TYPE" 
       TCGA-49-4512        TCGA-49-4514        TCGA-49-6742        TCGA-49-6743 
"CXORF59 WILD-TYPE" "CXORF59 WILD-TYPE" "CXORF59 WILD-TYPE" "CXORF59 WILD-TYPE" 
       TCGA-49-6744        TCGA-49-6745        TCGA-50-5044        TCGA-50-5045 
  "CXORF59 MUTATED" "CXORF59 WILD-TYPE" "CXORF59 WILD-TYPE" "CXORF59 WILD-TYPE" 
       TCGA-50-5049        TCGA-50-5051        TCGA-50-5055        TCGA-50-5066 
"CXORF59 WILD-TYPE" "CXORF59 WILD-TYPE" "CXORF59 WILD-TYPE" "CXORF59 WILD-TYPE" 
       TCGA-50-5068        TCGA-50-5072        TCGA-50-5930        TCGA-50-5931 
"CXORF59 WILD-TYPE" "CXORF59 WILD-TYPE" "CXORF59 WILD-TYPE" "CXORF59 WILD-TYPE" 
       TCGA-50-5932        TCGA-50-5933        TCGA-50-5935        TCGA-50-5936 
"CXORF59 WILD-TYPE" "CXORF59 WILD-TYPE" "CXORF59 WILD-TYPE" "CXORF59 WILD-TYPE" 
       TCGA-50-5939        TCGA-50-5941        TCGA-50-5942        TCGA-50-5944 
"CXORF59 WILD-TYPE" "CXORF59 WILD-TYPE" "CXORF59 WILD-TYPE" "CXORF59 WILD-TYPE" 
       TCGA-50-5946        TCGA-50-6590        TCGA-50-6591        TCGA-50-6592 
"CXORF59 WILD-TYPE" "CXORF59 WILD-TYPE" "CXORF59 WILD-TYPE" "CXORF59 WILD-TYPE" 
       TCGA-50-6593        TCGA-50-6594        TCGA-50-6595        TCGA-50-6597 
"CXORF59 WILD-TYPE" "CXORF59 WILD-TYPE" "CXORF59 WILD-TYPE" "CXORF59 WILD-TYPE" 
       TCGA-55-1592        TCGA-55-1594        TCGA-55-1595        TCGA-55-1596 
"CXORF59 WILD-TYPE" "CXORF59 WILD-TYPE"   "CXORF59 MUTATED" "CXORF59 WILD-TYPE" 
       TCGA-55-5899        TCGA-55-6543        TCGA-55-6642        TCGA-55-6712 
"CXORF59 WILD-TYPE" "CXORF59 WILD-TYPE" "CXORF59 WILD-TYPE" "CXORF59 WILD-TYPE" 
       TCGA-64-1676        TCGA-64-1677        TCGA-64-1678        TCGA-64-1680 
"CXORF59 WILD-TYPE" "CXORF59 WILD-TYPE" "CXORF59 WILD-TYPE" "CXORF59 WILD-TYPE" 
       TCGA-64-5774        TCGA-64-5775        TCGA-64-5778        TCGA-64-5779 
"CXORF59 WILD-TYPE" "CXORF59 WILD-TYPE" "CXORF59 WILD-TYPE" "CXORF59 WILD-TYPE" 
       TCGA-64-5781        TCGA-64-5815        TCGA-67-3770        TCGA-67-3771 
"CXORF59 WILD-TYPE" "CXORF59 WILD-TYPE" "CXORF59 WILD-TYPE" "CXORF59 WILD-TYPE" 
       TCGA-67-3772        TCGA-67-3773        TCGA-67-3774        TCGA-67-6215 
"CXORF59 WILD-TYPE" "CXORF59 WILD-TYPE" "CXORF59 WILD-TYPE" "CXORF59 WILD-TYPE" 
       TCGA-67-6216        TCGA-67-6217        TCGA-71-6725        TCGA-73-4658 
"CXORF59 WILD-TYPE" "CXORF59 WILD-TYPE" "CXORF59 WILD-TYPE" "CXORF59 WILD-TYPE" 
       TCGA-73-4659        TCGA-73-4662        TCGA-73-4666        TCGA-73-4668 
"CXORF59 WILD-TYPE" "CXORF59 WILD-TYPE" "CXORF59 WILD-TYPE" "CXORF59 WILD-TYPE" 
       TCGA-73-4670        TCGA-73-4675        TCGA-73-4676        TCGA-73-4677 
"CXORF59 WILD-TYPE" "CXORF59 WILD-TYPE" "CXORF59 WILD-TYPE" "CXORF59 WILD-TYPE" 
       TCGA-91-6828        TCGA-91-6829        TCGA-91-6831        TCGA-91-6835 
"CXORF59 WILD-TYPE" "CXORF59 WILD-TYPE" "CXORF59 WILD-TYPE" "CXORF59 WILD-TYPE" 
       TCGA-91-6836 
"CXORF59 WILD-TYPE" 
       TCGA-05-4249        TCGA-05-4250        TCGA-05-4382        TCGA-05-4384 
"CXORF59 WILD-TYPE" "CXORF59 WILD-TYPE"   "CXORF59 MUTATED" "CXORF59 WILD-TYPE" 
       TCGA-05-4390        TCGA-05-4396        TCGA-05-4397        TCGA-05-4398 
"CXORF59 WILD-TYPE" "CXORF59 WILD-TYPE" "CXORF59 WILD-TYPE" "CXORF59 WILD-TYPE" 
       TCGA-05-4402        TCGA-05-4405        TCGA-05-4415        TCGA-05-4417 
"CXORF59 WILD-TYPE" "CXORF59 WILD-TYPE" "CXORF59 WILD-TYPE" "CXORF59 WILD-TYPE" 
       TCGA-05-4418        TCGA-05-4420        TCGA-05-4424        TCGA-05-4426 
"CXORF59 WILD-TYPE" "CXORF59 WILD-TYPE" "CXORF59 WILD-TYPE" "CXORF59 WILD-TYPE" 
       TCGA-05-4427        TCGA-05-4430        TCGA-05-4432        TCGA-05-4433 
"CXORF59 WILD-TYPE"   "CXORF59 MUTATED" "CXORF59 WILD-TYPE" "CXORF59 WILD-TYPE" 
       TCGA-05-4434        TCGA-05-5420        TCGA-05-5423        TCGA-05-5425 
"CXORF59 WILD-TYPE"   "CXORF59 MUTATED" "CXORF59 WILD-TYPE" "CXORF59 WILD-TYPE" 
       TCGA-05-5429        TCGA-05-5715        TCGA-35-3615        TCGA-35-4122 
"CXORF59 WILD-TYPE" "CXORF59 WILD-TYPE" "CXORF59 WILD-TYPE" "CXORF59 WILD-TYPE" 
       TCGA-35-4123        TCGA-35-5375        TCGA-38-4625        TCGA-38-4626 
"CXORF59 WILD-TYPE"   "CXORF59 MUTATED" "CXORF59 WILD-TYPE" "CXORF59 WILD-TYPE" 
       TCGA-38-4627        TCGA-38-4628        TCGA-38-4629        TCGA-38-4630 
"CXORF59 WILD-TYPE" "CXORF59 WILD-TYPE" "CXORF59 WILD-TYPE" "CXORF59 WILD-TYPE" 
       TCGA-38-4631        TCGA-38-4632        TCGA-38-6178        TCGA-44-2655 
"CXORF59 WILD-TYPE" "CXORF59 WILD-TYPE" "CXORF59 WILD-TYPE" "CXORF59 WILD-TYPE" 
       TCGA-44-2656        TCGA-44-2657        TCGA-44-2659        TCGA-44-2661 
"CXORF59 WILD-TYPE" "CXORF59 WILD-TYPE" "CXORF59 WILD-TYPE" "CXORF59 WILD-TYPE" 
       TCGA-44-2662        TCGA-44-2665        TCGA-44-2666        TCGA-44-2668 
"CXORF59 WILD-TYPE" "CXORF59 WILD-TYPE" "CXORF59 WILD-TYPE" "CXORF59 WILD-TYPE" 
       TCGA-44-3396        TCGA-44-3398        TCGA-44-3918        TCGA-44-3919 
"CXORF59 WILD-TYPE" "CXORF59 WILD-TYPE" "CXORF59 WILD-TYPE" "CXORF59 WILD-TYPE" 
       TCGA-44-4112        TCGA-44-5643        TCGA-44-5645        TCGA-44-6144 
"CXORF59 WILD-TYPE" "CXORF59 WILD-TYPE" "CXORF59 WILD-TYPE" "CXORF59 WILD-TYPE" 
       TCGA-44-6145        TCGA-44-6146        TCGA-44-6147        TCGA-44-6148 
"CXORF59 WILD-TYPE" "CXORF59 WILD-TYPE" "CXORF59 WILD-TYPE" "CXORF59 WILD-TYPE" 
       TCGA-44-6774        TCGA-44-6775        TCGA-44-6776        TCGA-44-6777 
"CXORF59 WILD-TYPE" "CXORF59 WILD-TYPE" "CXORF59 WILD-TYPE" "CXORF59 WILD-TYPE" 
       TCGA-44-6778        TCGA-44-6779        TCGA-49-4486        TCGA-49-4487 
"CXORF59 WILD-TYPE" "CXORF59 WILD-TYPE" "CXORF59 WILD-TYPE" "CXORF59 WILD-TYPE" 
       TCGA-49-4488        TCGA-49-4490        TCGA-49-4494        TCGA-49-4501 
"CXORF59 WILD-TYPE" "CXORF59 WILD-TYPE" "CXORF59 WILD-TYPE" "CXORF59 WILD-TYPE" 
       TCGA-49-4505        TCGA-49-4506        TCGA-49-4507        TCGA-49-4510 
"CXORF59 WILD-TYPE" "CXORF59 WILD-TYPE" "CXORF59 WILD-TYPE" "CXORF59 WILD-TYPE" 
       TCGA-49-4512        TCGA-49-4514        TCGA-49-6742        TCGA-49-6743 
"CXORF59 WILD-TYPE" "CXORF59 WILD-TYPE" "CXORF59 WILD-TYPE" "CXORF59 WILD-TYPE" 
       TCGA-49-6744        TCGA-49-6745        TCGA-50-5044        TCGA-50-5045 
  "CXORF59 MUTATED" "CXORF59 WILD-TYPE" "CXORF59 WILD-TYPE" "CXORF59 WILD-TYPE" 
       TCGA-50-5049        TCGA-50-5051        TCGA-50-5055        TCGA-50-5066 
"CXORF59 WILD-TYPE" "CXORF59 WILD-TYPE" "CXORF59 WILD-TYPE" "CXORF59 WILD-TYPE" 
       TCGA-50-5068        TCGA-50-5072        TCGA-50-5930        TCGA-50-5931 
"CXORF59 WILD-TYPE" "CXORF59 WILD-TYPE" "CXORF59 WILD-TYPE" "CXORF59 WILD-TYPE" 
       TCGA-50-5932        TCGA-50-5933        TCGA-50-5935        TCGA-50-5936 
"CXORF59 WILD-TYPE" "CXORF59 WILD-TYPE" "CXORF59 WILD-TYPE" "CXORF59 WILD-TYPE" 
       TCGA-50-5939        TCGA-50-5941        TCGA-50-5942        TCGA-50-5944 
"CXORF59 WILD-TYPE" "CXORF59 WILD-TYPE" "CXORF59 WILD-TYPE" "CXORF59 WILD-TYPE" 
       TCGA-50-5946        TCGA-50-6590        TCGA-50-6591        TCGA-50-6592 
"CXORF59 WILD-TYPE" "CXORF59 WILD-TYPE" "CXORF59 WILD-TYPE" "CXORF59 WILD-TYPE" 
       TCGA-50-6593        TCGA-50-6594        TCGA-50-6595        TCGA-50-6597 
"CXORF59 WILD-TYPE" "CXORF59 WILD-TYPE" "CXORF59 WILD-TYPE" "CXORF59 WILD-TYPE" 
       TCGA-55-1592        TCGA-55-1594        TCGA-55-1595        TCGA-55-1596 
"CXORF59 WILD-TYPE" "CXORF59 WILD-TYPE"   "CXORF59 MUTATED" "CXORF59 WILD-TYPE" 
       TCGA-55-5899        TCGA-55-6543        TCGA-55-6642        TCGA-55-6712 
"CXORF59 WILD-TYPE" "CXORF59 WILD-TYPE" "CXORF59 WILD-TYPE" "CXORF59 WILD-TYPE" 
       TCGA-64-1676        TCGA-64-1677        TCGA-64-1678        TCGA-64-1680 
"CXORF59 WILD-TYPE" "CXORF59 WILD-TYPE" "CXORF59 WILD-TYPE" "CXORF59 WILD-TYPE" 
       TCGA-64-5774        TCGA-64-5775        TCGA-64-5778        TCGA-64-5779 
"CXORF59 WILD-TYPE" "CXORF59 WILD-TYPE" "CXORF59 WILD-TYPE" "CXORF59 WILD-TYPE" 
       TCGA-64-5781        TCGA-64-5815        TCGA-67-3770        TCGA-67-3771 
"CXORF59 WILD-TYPE" "CXORF59 WILD-TYPE" "CXORF59 WILD-TYPE" "CXORF59 WILD-TYPE" 
       TCGA-67-3772        TCGA-67-3773        TCGA-67-3774        TCGA-67-6215 
"CXORF59 WILD-TYPE" "CXORF59 WILD-TYPE" "CXORF59 WILD-TYPE" "CXORF59 WILD-TYPE" 
       TCGA-67-6216        TCGA-67-6217        TCGA-71-6725        TCGA-73-4658 
"CXORF59 WILD-TYPE" "CXORF59 WILD-TYPE" "CXORF59 WILD-TYPE" "CXORF59 WILD-TYPE" 
       TCGA-73-4659        TCGA-73-4662        TCGA-73-4666        TCGA-73-4668 
"CXORF59 WILD-TYPE" "CXORF59 WILD-TYPE" "CXORF59 WILD-TYPE" "CXORF59 WILD-TYPE" 
       TCGA-73-4670        TCGA-73-4675        TCGA-73-4676        TCGA-73-4677 
"CXORF59 WILD-TYPE" "CXORF59 WILD-TYPE" "CXORF59 WILD-TYPE" "CXORF59 WILD-TYPE" 
       TCGA-91-6828        TCGA-91-6829        TCGA-91-6831        TCGA-91-6835 
"CXORF59 WILD-TYPE" "CXORF59 WILD-TYPE" "CXORF59 WILD-TYPE" "CXORF59 WILD-TYPE" 
       TCGA-91-6836 
"CXORF59 WILD-TYPE" 
[1] "hr="     "2.6e+07"
D57V2, continuous
D57V3, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  CXORF59 MUTATED      5    3
  CXORF59 WILD-TYPE   88   76
        clus
vv       CXORF59 MUTATED CXORF59 WILD-TYPE
  FEMALE               5                88
  MALE                 3                76
D57V4, continuous
[1] "Remove cluster labels:" "CXORF59 MUTATED"       
clus
  CXORF59 MUTATED CXORF59 WILD-TYPE 
                1                11 
       TCGA-35-4122        TCGA-35-4123        TCGA-64-1677        TCGA-64-5778 
"CXORF59 WILD-TYPE" "CXORF59 WILD-TYPE" "CXORF59 WILD-TYPE" "CXORF59 WILD-TYPE" 
       TCGA-71-6725        TCGA-73-4659        TCGA-73-4662        TCGA-73-4666 
"CXORF59 WILD-TYPE" "CXORF59 WILD-TYPE" "CXORF59 WILD-TYPE" "CXORF59 WILD-TYPE" 
       TCGA-73-4668        TCGA-73-4676        TCGA-75-5122 
"CXORF59 WILD-TYPE" "CXORF59 WILD-TYPE" "CXORF59 WILD-TYPE" 
D57V5, multiclass
D57V6, multiclass
    clus
vv   CXORF59 MUTATED CXORF59 WILD-TYPE
  T1               1                40
  T2               6               102
  T3               1                13
  T4               0                 8
D57V7, multiclass
       clus
vv      CXORF59 MUTATED CXORF59 WILD-TYPE
  N0                  4                91
  N1                  1                36
  N2+N3               3                32
D57V8, multiclass
    clus
vv   CXORF59 MUTATED CXORF59 WILD-TYPE
  M0               7               130
  M1               0                 9
  MX               1                21
D57V9, multiclass
     clus
vv    CXORF59 MUTATED CXORF59 WILD-TYPE
  I                 4                84
  II                1                32
  III               3                36
  IV                0                 9
D57V10, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  CXORF59 MUTATED      0    8
  CXORF59 WILD-TYPE   16  148
     clus
vv    CXORF59 MUTATED CXORF59 WILD-TYPE
  NO                0                16
  YES               8               148
D57V11, continuous
D57V12, continuous
D57V13, multiclass
                                             clus
vv                                            CXORF59 MUTATED CXORF59 WILD-TYPE
  CURRENT REFORMED SMOKER FOR < OR = 15 YEARS               7                55
  CURRENT REFORMED SMOKER FOR > 15 YEARS                    0                46
  CURRENT SMOKER                                            1                27
  LIFELONG NON-SMOKER                                       0                24
D57V14, continuous

Clustering(58) Variable = NRG3 MUTATION ANALYSIS
D58V1, survival
                sevent
clus2             0  1
  NRG3 MUTATED    9  3
  NRG3 WILD-TYPE 90 47
  NRG3 MUTATED NRG3 WILD-TYPE 
            12            137 
  NRG3 MUTATED NRG3 WILD-TYPE 
             3             47 
$`NRG3 MUTATED`
TCGA-05-4396 TCGA-05-4398 TCGA-05-4424 TCGA-05-4427 TCGA-05-4432 TCGA-35-4123 
        9.96        47.05        30.02        26.01        25.02         5.95 
TCGA-44-2662 TCGA-44-5643 TCGA-44-6145 TCGA-50-5931 TCGA-50-5935 TCGA-73-4668 
       15.78         3.48         3.35         8.78        21.47        15.35 

$`NRG3 WILD-TYPE`
TCGA-05-4249 TCGA-05-4250 TCGA-05-4382 TCGA-05-4384 TCGA-05-4390 TCGA-05-4397 
       38.07         3.98        19.92        14.01        37.02        24.03 
TCGA-05-4402 TCGA-05-4405 TCGA-05-4415 TCGA-05-4417 TCGA-05-4418 TCGA-05-4420 
        8.02        20.05         2.96        14.93         8.98        29.95 
TCGA-05-4426 TCGA-05-4430 TCGA-05-4433 TCGA-05-4434 TCGA-05-5420 TCGA-05-5423 
       26.01        25.02        24.00        15.02         1.02         4.96 
TCGA-05-5425 TCGA-05-5429 TCGA-05-5715 TCGA-35-3615 TCGA-35-4122 TCGA-35-5375 
        2.96         0.99         2.04         0.46         7.36         8.68 
TCGA-38-4625 TCGA-38-4626 TCGA-38-4627 TCGA-38-4628 TCGA-38-4629 TCGA-38-4630 
       47.61        85.32        37.71        49.02        28.37        35.28 
TCGA-38-4631 TCGA-38-4632 TCGA-38-6178 TCGA-44-2655 TCGA-44-2656 TCGA-44-2657 
       11.64        44.61         5.19        18.87        19.10        13.15 
TCGA-44-2659 TCGA-44-2661 TCGA-44-2665 TCGA-44-2666 TCGA-44-2668 TCGA-44-3396 
       17.39         3.39        13.15         3.19         8.09        10.22 
TCGA-44-3398 TCGA-44-3918 TCGA-44-3919 TCGA-44-4112 TCGA-44-5645 TCGA-44-6144 
        8.32         6.44         6.21         4.60         6.84         0.30 
TCGA-44-6146 TCGA-44-6147 TCGA-44-6148 TCGA-44-6774 TCGA-44-6775 TCGA-44-6776 
        9.93         7.76         3.12         5.42         2.70        63.72 
TCGA-44-6777 TCGA-44-6778 TCGA-44-6779 TCGA-49-4486 TCGA-49-4487 TCGA-49-4488 
       32.45        36.49        16.41        76.21        28.11        28.57 
TCGA-49-4490 TCGA-49-4494 TCGA-49-4501 TCGA-49-4505 TCGA-49-4506 TCGA-49-4507 
       12.66        35.54        46.72        14.07        32.84         8.81 
TCGA-49-4510 TCGA-49-4512 TCGA-49-4514 TCGA-49-6742 TCGA-49-6743 TCGA-49-6744 
       29.46        29.75        43.20        15.02        12.13        12.99 
TCGA-49-6745 TCGA-50-5044 TCGA-50-5045 TCGA-50-5049 TCGA-50-5051 TCGA-50-5055 
        4.93        20.48        71.47        48.82        14.96        25.81 
TCGA-50-5066 TCGA-50-5068 TCGA-50-5072 TCGA-50-5930 TCGA-50-5932 TCGA-50-5933 
        9.76        49.28         8.05         9.27        35.87        77.88 
TCGA-50-5936 TCGA-50-5939 TCGA-50-5941 TCGA-50-5942 TCGA-50-5944 TCGA-50-5946 
        8.45        15.12         9.37         4.44        12.26        11.47 
TCGA-50-6590 TCGA-50-6591 TCGA-50-6592 TCGA-50-6593 TCGA-50-6594 TCGA-50-6595 
       42.31         3.88        25.51        11.05        12.16         6.21 
TCGA-50-6597 TCGA-55-1592 TCGA-55-1594 TCGA-55-1595 TCGA-55-1596 TCGA-55-5899 
       33.37        23.05        38.73        48.62        45.17         2.86 
TCGA-55-6543 TCGA-55-6642 TCGA-55-6712 TCGA-64-1676 TCGA-64-1677 TCGA-64-1678 
        0.07        32.61         0.79        56.81        20.65        39.09 
TCGA-64-1680 TCGA-64-5774 TCGA-64-5775 TCGA-64-5778 TCGA-64-5779 TCGA-64-5781 
       37.02        83.84         0.10        30.44        16.67        39.52 
TCGA-64-5815 TCGA-67-3770 TCGA-67-3771 TCGA-67-3772 TCGA-67-3773 TCGA-67-3774 
        7.33         0.99         1.97         0.59         2.04         0.59 
TCGA-67-6215 TCGA-67-6216 TCGA-67-6217 TCGA-71-6725 TCGA-73-4658 TCGA-73-4659 
        0.89         0.69        13.87         2.01        52.57        23.38 
TCGA-73-4662 TCGA-73-4666 TCGA-73-4670 TCGA-73-4675 TCGA-73-4676 TCGA-73-4677 
       29.95        20.28         0.46         1.32         4.01         1.25 
TCGA-91-6828 TCGA-91-6829 TCGA-91-6831 TCGA-91-6835 TCGA-91-6836 
        1.22        41.33         1.28         1.15         0.36 

  NRG3 MUTATED NRG3 WILD-TYPE 
          3.35           0.07 
  NRG3 MUTATED NRG3 WILD-TYPE 
         47.05          85.32 
  NRG3 MUTATED NRG3 WILD-TYPE 
        15.565         13.150 
[1] "3.4 - 47.0 (15.6)" "0.1 - 85.3 (13.2)"
    TCGA-05-4249     TCGA-05-4250     TCGA-05-4382     TCGA-05-4384 
"NRG3 WILD-TYPE" "NRG3 WILD-TYPE" "NRG3 WILD-TYPE" "NRG3 WILD-TYPE" 
    TCGA-05-4390     TCGA-05-4396     TCGA-05-4397     TCGA-05-4398 
"NRG3 WILD-TYPE"   "NRG3 MUTATED" "NRG3 WILD-TYPE"   "NRG3 MUTATED" 
    TCGA-05-4402     TCGA-05-4405     TCGA-05-4415     TCGA-05-4417 
"NRG3 WILD-TYPE" "NRG3 WILD-TYPE" "NRG3 WILD-TYPE" "NRG3 WILD-TYPE" 
    TCGA-05-4418     TCGA-05-4420     TCGA-05-4424     TCGA-05-4426 
"NRG3 WILD-TYPE" "NRG3 WILD-TYPE"   "NRG3 MUTATED" "NRG3 WILD-TYPE" 
    TCGA-05-4427     TCGA-05-4430     TCGA-05-4432     TCGA-05-4433 
  "NRG3 MUTATED" "NRG3 WILD-TYPE"   "NRG3 MUTATED" "NRG3 WILD-TYPE" 
    TCGA-05-4434     TCGA-05-5420     TCGA-05-5423     TCGA-05-5425 
"NRG3 WILD-TYPE" "NRG3 WILD-TYPE" "NRG3 WILD-TYPE" "NRG3 WILD-TYPE" 
    TCGA-05-5429     TCGA-05-5715     TCGA-35-3615     TCGA-35-4122 
"NRG3 WILD-TYPE" "NRG3 WILD-TYPE" "NRG3 WILD-TYPE" "NRG3 WILD-TYPE" 
    TCGA-35-4123     TCGA-35-5375     TCGA-38-4625     TCGA-38-4626 
  "NRG3 MUTATED" "NRG3 WILD-TYPE" "NRG3 WILD-TYPE" "NRG3 WILD-TYPE" 
    TCGA-38-4627     TCGA-38-4628     TCGA-38-4629     TCGA-38-4630 
"NRG3 WILD-TYPE" "NRG3 WILD-TYPE" "NRG3 WILD-TYPE" "NRG3 WILD-TYPE" 
    TCGA-38-4631     TCGA-38-4632     TCGA-38-6178     TCGA-44-2655 
"NRG3 WILD-TYPE" "NRG3 WILD-TYPE" "NRG3 WILD-TYPE" "NRG3 WILD-TYPE" 
    TCGA-44-2656     TCGA-44-2657     TCGA-44-2659     TCGA-44-2661 
"NRG3 WILD-TYPE" "NRG3 WILD-TYPE" "NRG3 WILD-TYPE" "NRG3 WILD-TYPE" 
    TCGA-44-2662     TCGA-44-2665     TCGA-44-2666     TCGA-44-2668 
  "NRG3 MUTATED" "NRG3 WILD-TYPE" "NRG3 WILD-TYPE" "NRG3 WILD-TYPE" 
    TCGA-44-3396     TCGA-44-3398     TCGA-44-3918     TCGA-44-3919 
"NRG3 WILD-TYPE" "NRG3 WILD-TYPE" "NRG3 WILD-TYPE" "NRG3 WILD-TYPE" 
    TCGA-44-4112     TCGA-44-5643     TCGA-44-5645     TCGA-44-6144 
"NRG3 WILD-TYPE"   "NRG3 MUTATED" "NRG3 WILD-TYPE" "NRG3 WILD-TYPE" 
    TCGA-44-6145     TCGA-44-6146     TCGA-44-6147     TCGA-44-6148 
  "NRG3 MUTATED" "NRG3 WILD-TYPE" "NRG3 WILD-TYPE" "NRG3 WILD-TYPE" 
    TCGA-44-6774     TCGA-44-6775     TCGA-44-6776     TCGA-44-6777 
"NRG3 WILD-TYPE" "NRG3 WILD-TYPE" "NRG3 WILD-TYPE" "NRG3 WILD-TYPE" 
    TCGA-44-6778     TCGA-44-6779     TCGA-49-4486     TCGA-49-4487 
"NRG3 WILD-TYPE" "NRG3 WILD-TYPE" "NRG3 WILD-TYPE" "NRG3 WILD-TYPE" 
    TCGA-49-4488     TCGA-49-4490     TCGA-49-4494     TCGA-49-4501 
"NRG3 WILD-TYPE" "NRG3 WILD-TYPE" "NRG3 WILD-TYPE" "NRG3 WILD-TYPE" 
    TCGA-49-4505     TCGA-49-4506     TCGA-49-4507     TCGA-49-4510 
"NRG3 WILD-TYPE" "NRG3 WILD-TYPE" "NRG3 WILD-TYPE" "NRG3 WILD-TYPE" 
    TCGA-49-4512     TCGA-49-4514     TCGA-49-6742     TCGA-49-6743 
"NRG3 WILD-TYPE" "NRG3 WILD-TYPE" "NRG3 WILD-TYPE" "NRG3 WILD-TYPE" 
    TCGA-49-6744     TCGA-49-6745     TCGA-50-5044     TCGA-50-5045 
"NRG3 WILD-TYPE" "NRG3 WILD-TYPE" "NRG3 WILD-TYPE" "NRG3 WILD-TYPE" 
    TCGA-50-5049     TCGA-50-5051     TCGA-50-5055     TCGA-50-5066 
"NRG3 WILD-TYPE" "NRG3 WILD-TYPE" "NRG3 WILD-TYPE" "NRG3 WILD-TYPE" 
    TCGA-50-5068     TCGA-50-5072     TCGA-50-5930     TCGA-50-5931 
"NRG3 WILD-TYPE" "NRG3 WILD-TYPE" "NRG3 WILD-TYPE"   "NRG3 MUTATED" 
    TCGA-50-5932     TCGA-50-5933     TCGA-50-5935     TCGA-50-5936 
"NRG3 WILD-TYPE" "NRG3 WILD-TYPE"   "NRG3 MUTATED" "NRG3 WILD-TYPE" 
    TCGA-50-5939     TCGA-50-5941     TCGA-50-5942     TCGA-50-5944 
"NRG3 WILD-TYPE" "NRG3 WILD-TYPE" "NRG3 WILD-TYPE" "NRG3 WILD-TYPE" 
    TCGA-50-5946     TCGA-50-6590     TCGA-50-6591     TCGA-50-6592 
"NRG3 WILD-TYPE" "NRG3 WILD-TYPE" "NRG3 WILD-TYPE" "NRG3 WILD-TYPE" 
    TCGA-50-6593     TCGA-50-6594     TCGA-50-6595     TCGA-50-6597 
"NRG3 WILD-TYPE" "NRG3 WILD-TYPE" "NRG3 WILD-TYPE" "NRG3 WILD-TYPE" 
    TCGA-55-1592     TCGA-55-1594     TCGA-55-1595     TCGA-55-1596 
"NRG3 WILD-TYPE" "NRG3 WILD-TYPE" "NRG3 WILD-TYPE" "NRG3 WILD-TYPE" 
    TCGA-55-5899     TCGA-55-6543     TCGA-55-6642     TCGA-55-6712 
"NRG3 WILD-TYPE" "NRG3 WILD-TYPE" "NRG3 WILD-TYPE" "NRG3 WILD-TYPE" 
    TCGA-64-1676     TCGA-64-1677     TCGA-64-1678     TCGA-64-1680 
"NRG3 WILD-TYPE" "NRG3 WILD-TYPE" "NRG3 WILD-TYPE" "NRG3 WILD-TYPE" 
    TCGA-64-5774     TCGA-64-5775     TCGA-64-5778     TCGA-64-5779 
"NRG3 WILD-TYPE" "NRG3 WILD-TYPE" "NRG3 WILD-TYPE" "NRG3 WILD-TYPE" 
    TCGA-64-5781     TCGA-64-5815     TCGA-67-3770     TCGA-67-3771 
"NRG3 WILD-TYPE" "NRG3 WILD-TYPE" "NRG3 WILD-TYPE" "NRG3 WILD-TYPE" 
    TCGA-67-3772     TCGA-67-3773     TCGA-67-3774     TCGA-67-6215 
"NRG3 WILD-TYPE" "NRG3 WILD-TYPE" "NRG3 WILD-TYPE" "NRG3 WILD-TYPE" 
    TCGA-67-6216     TCGA-67-6217     TCGA-71-6725     TCGA-73-4658 
"NRG3 WILD-TYPE" "NRG3 WILD-TYPE" "NRG3 WILD-TYPE" "NRG3 WILD-TYPE" 
    TCGA-73-4659     TCGA-73-4662     TCGA-73-4666     TCGA-73-4668 
"NRG3 WILD-TYPE" "NRG3 WILD-TYPE" "NRG3 WILD-TYPE"   "NRG3 MUTATED" 
    TCGA-73-4670     TCGA-73-4675     TCGA-73-4676     TCGA-73-4677 
"NRG3 WILD-TYPE" "NRG3 WILD-TYPE" "NRG3 WILD-TYPE" "NRG3 WILD-TYPE" 
    TCGA-91-6828     TCGA-91-6829     TCGA-91-6831     TCGA-91-6835 
"NRG3 WILD-TYPE" "NRG3 WILD-TYPE" "NRG3 WILD-TYPE" "NRG3 WILD-TYPE" 
    TCGA-91-6836 
"NRG3 WILD-TYPE" 
    TCGA-05-4249     TCGA-05-4250     TCGA-05-4382     TCGA-05-4384 
"NRG3 WILD-TYPE" "NRG3 WILD-TYPE" "NRG3 WILD-TYPE" "NRG3 WILD-TYPE" 
    TCGA-05-4390     TCGA-05-4396     TCGA-05-4397     TCGA-05-4398 
"NRG3 WILD-TYPE"   "NRG3 MUTATED" "NRG3 WILD-TYPE"   "NRG3 MUTATED" 
    TCGA-05-4402     TCGA-05-4405     TCGA-05-4415     TCGA-05-4417 
"NRG3 WILD-TYPE" "NRG3 WILD-TYPE" "NRG3 WILD-TYPE" "NRG3 WILD-TYPE" 
    TCGA-05-4418     TCGA-05-4420     TCGA-05-4424     TCGA-05-4426 
"NRG3 WILD-TYPE" "NRG3 WILD-TYPE"   "NRG3 MUTATED" "NRG3 WILD-TYPE" 
    TCGA-05-4427     TCGA-05-4430     TCGA-05-4432     TCGA-05-4433 
  "NRG3 MUTATED" "NRG3 WILD-TYPE"   "NRG3 MUTATED" "NRG3 WILD-TYPE" 
    TCGA-05-4434     TCGA-05-5420     TCGA-05-5423     TCGA-05-5425 
"NRG3 WILD-TYPE" "NRG3 WILD-TYPE" "NRG3 WILD-TYPE" "NRG3 WILD-TYPE" 
    TCGA-05-5429     TCGA-05-5715     TCGA-35-3615     TCGA-35-4122 
"NRG3 WILD-TYPE" "NRG3 WILD-TYPE" "NRG3 WILD-TYPE" "NRG3 WILD-TYPE" 
    TCGA-35-4123     TCGA-35-5375     TCGA-38-4625     TCGA-38-4626 
  "NRG3 MUTATED" "NRG3 WILD-TYPE" "NRG3 WILD-TYPE" "NRG3 WILD-TYPE" 
    TCGA-38-4627     TCGA-38-4628     TCGA-38-4629     TCGA-38-4630 
"NRG3 WILD-TYPE" "NRG3 WILD-TYPE" "NRG3 WILD-TYPE" "NRG3 WILD-TYPE" 
    TCGA-38-4631     TCGA-38-4632     TCGA-38-6178     TCGA-44-2655 
"NRG3 WILD-TYPE" "NRG3 WILD-TYPE" "NRG3 WILD-TYPE" "NRG3 WILD-TYPE" 
    TCGA-44-2656     TCGA-44-2657     TCGA-44-2659     TCGA-44-2661 
"NRG3 WILD-TYPE" "NRG3 WILD-TYPE" "NRG3 WILD-TYPE" "NRG3 WILD-TYPE" 
    TCGA-44-2662     TCGA-44-2665     TCGA-44-2666     TCGA-44-2668 
  "NRG3 MUTATED" "NRG3 WILD-TYPE" "NRG3 WILD-TYPE" "NRG3 WILD-TYPE" 
    TCGA-44-3396     TCGA-44-3398     TCGA-44-3918     TCGA-44-3919 
"NRG3 WILD-TYPE" "NRG3 WILD-TYPE" "NRG3 WILD-TYPE" "NRG3 WILD-TYPE" 
    TCGA-44-4112     TCGA-44-5643     TCGA-44-5645     TCGA-44-6144 
"NRG3 WILD-TYPE"   "NRG3 MUTATED" "NRG3 WILD-TYPE" "NRG3 WILD-TYPE" 
    TCGA-44-6145     TCGA-44-6146     TCGA-44-6147     TCGA-44-6148 
  "NRG3 MUTATED" "NRG3 WILD-TYPE" "NRG3 WILD-TYPE" "NRG3 WILD-TYPE" 
    TCGA-44-6774     TCGA-44-6775     TCGA-44-6776     TCGA-44-6777 
"NRG3 WILD-TYPE" "NRG3 WILD-TYPE" "NRG3 WILD-TYPE" "NRG3 WILD-TYPE" 
    TCGA-44-6778     TCGA-44-6779     TCGA-49-4486     TCGA-49-4487 
"NRG3 WILD-TYPE" "NRG3 WILD-TYPE" "NRG3 WILD-TYPE" "NRG3 WILD-TYPE" 
    TCGA-49-4488     TCGA-49-4490     TCGA-49-4494     TCGA-49-4501 
"NRG3 WILD-TYPE" "NRG3 WILD-TYPE" "NRG3 WILD-TYPE" "NRG3 WILD-TYPE" 
    TCGA-49-4505     TCGA-49-4506     TCGA-49-4507     TCGA-49-4510 
"NRG3 WILD-TYPE" "NRG3 WILD-TYPE" "NRG3 WILD-TYPE" "NRG3 WILD-TYPE" 
    TCGA-49-4512     TCGA-49-4514     TCGA-49-6742     TCGA-49-6743 
"NRG3 WILD-TYPE" "NRG3 WILD-TYPE" "NRG3 WILD-TYPE" "NRG3 WILD-TYPE" 
    TCGA-49-6744     TCGA-49-6745     TCGA-50-5044     TCGA-50-5045 
"NRG3 WILD-TYPE" "NRG3 WILD-TYPE" "NRG3 WILD-TYPE" "NRG3 WILD-TYPE" 
    TCGA-50-5049     TCGA-50-5051     TCGA-50-5055     TCGA-50-5066 
"NRG3 WILD-TYPE" "NRG3 WILD-TYPE" "NRG3 WILD-TYPE" "NRG3 WILD-TYPE" 
    TCGA-50-5068     TCGA-50-5072     TCGA-50-5930     TCGA-50-5931 
"NRG3 WILD-TYPE" "NRG3 WILD-TYPE" "NRG3 WILD-TYPE"   "NRG3 MUTATED" 
    TCGA-50-5932     TCGA-50-5933     TCGA-50-5935     TCGA-50-5936 
"NRG3 WILD-TYPE" "NRG3 WILD-TYPE"   "NRG3 MUTATED" "NRG3 WILD-TYPE" 
    TCGA-50-5939     TCGA-50-5941     TCGA-50-5942     TCGA-50-5944 
"NRG3 WILD-TYPE" "NRG3 WILD-TYPE" "NRG3 WILD-TYPE" "NRG3 WILD-TYPE" 
    TCGA-50-5946     TCGA-50-6590     TCGA-50-6591     TCGA-50-6592 
"NRG3 WILD-TYPE" "NRG3 WILD-TYPE" "NRG3 WILD-TYPE" "NRG3 WILD-TYPE" 
    TCGA-50-6593     TCGA-50-6594     TCGA-50-6595     TCGA-50-6597 
"NRG3 WILD-TYPE" "NRG3 WILD-TYPE" "NRG3 WILD-TYPE" "NRG3 WILD-TYPE" 
    TCGA-55-1592     TCGA-55-1594     TCGA-55-1595     TCGA-55-1596 
"NRG3 WILD-TYPE" "NRG3 WILD-TYPE" "NRG3 WILD-TYPE" "NRG3 WILD-TYPE" 
    TCGA-55-5899     TCGA-55-6543     TCGA-55-6642     TCGA-55-6712 
"NRG3 WILD-TYPE" "NRG3 WILD-TYPE" "NRG3 WILD-TYPE" "NRG3 WILD-TYPE" 
    TCGA-64-1676     TCGA-64-1677     TCGA-64-1678     TCGA-64-1680 
"NRG3 WILD-TYPE" "NRG3 WILD-TYPE" "NRG3 WILD-TYPE" "NRG3 WILD-TYPE" 
    TCGA-64-5774     TCGA-64-5775     TCGA-64-5778     TCGA-64-5779 
"NRG3 WILD-TYPE" "NRG3 WILD-TYPE" "NRG3 WILD-TYPE" "NRG3 WILD-TYPE" 
    TCGA-64-5781     TCGA-64-5815     TCGA-67-3770     TCGA-67-3771 
"NRG3 WILD-TYPE" "NRG3 WILD-TYPE" "NRG3 WILD-TYPE" "NRG3 WILD-TYPE" 
    TCGA-67-3772     TCGA-67-3773     TCGA-67-3774     TCGA-67-6215 
"NRG3 WILD-TYPE" "NRG3 WILD-TYPE" "NRG3 WILD-TYPE" "NRG3 WILD-TYPE" 
    TCGA-67-6216     TCGA-67-6217     TCGA-71-6725     TCGA-73-4658 
"NRG3 WILD-TYPE" "NRG3 WILD-TYPE" "NRG3 WILD-TYPE" "NRG3 WILD-TYPE" 
    TCGA-73-4659     TCGA-73-4662     TCGA-73-4666     TCGA-73-4668 
"NRG3 WILD-TYPE" "NRG3 WILD-TYPE" "NRG3 WILD-TYPE"   "NRG3 MUTATED" 
    TCGA-73-4670     TCGA-73-4675     TCGA-73-4676     TCGA-73-4677 
"NRG3 WILD-TYPE" "NRG3 WILD-TYPE" "NRG3 WILD-TYPE" "NRG3 WILD-TYPE" 
    TCGA-91-6828     TCGA-91-6829     TCGA-91-6831     TCGA-91-6835 
"NRG3 WILD-TYPE" "NRG3 WILD-TYPE" "NRG3 WILD-TYPE" "NRG3 WILD-TYPE" 
    TCGA-91-6836 
"NRG3 WILD-TYPE" 
    TCGA-05-4249     TCGA-05-4250     TCGA-05-4382     TCGA-05-4384 
"NRG3 WILD-TYPE" "NRG3 WILD-TYPE" "NRG3 WILD-TYPE" "NRG3 WILD-TYPE" 
    TCGA-05-4390     TCGA-05-4396     TCGA-05-4397     TCGA-05-4398 
"NRG3 WILD-TYPE"   "NRG3 MUTATED" "NRG3 WILD-TYPE"   "NRG3 MUTATED" 
    TCGA-05-4402     TCGA-05-4405     TCGA-05-4415     TCGA-05-4417 
"NRG3 WILD-TYPE" "NRG3 WILD-TYPE" "NRG3 WILD-TYPE" "NRG3 WILD-TYPE" 
    TCGA-05-4418     TCGA-05-4420     TCGA-05-4424     TCGA-05-4426 
"NRG3 WILD-TYPE" "NRG3 WILD-TYPE"   "NRG3 MUTATED" "NRG3 WILD-TYPE" 
    TCGA-05-4427     TCGA-05-4430     TCGA-05-4432     TCGA-05-4433 
  "NRG3 MUTATED" "NRG3 WILD-TYPE"   "NRG3 MUTATED" "NRG3 WILD-TYPE" 
    TCGA-05-4434     TCGA-05-5420     TCGA-05-5423     TCGA-05-5425 
"NRG3 WILD-TYPE" "NRG3 WILD-TYPE" "NRG3 WILD-TYPE" "NRG3 WILD-TYPE" 
    TCGA-05-5429     TCGA-05-5715     TCGA-35-3615     TCGA-35-4122 
"NRG3 WILD-TYPE" "NRG3 WILD-TYPE" "NRG3 WILD-TYPE" "NRG3 WILD-TYPE" 
    TCGA-35-4123     TCGA-35-5375     TCGA-38-4625     TCGA-38-4626 
  "NRG3 MUTATED" "NRG3 WILD-TYPE" "NRG3 WILD-TYPE" "NRG3 WILD-TYPE" 
    TCGA-38-4627     TCGA-38-4628     TCGA-38-4629     TCGA-38-4630 
"NRG3 WILD-TYPE" "NRG3 WILD-TYPE" "NRG3 WILD-TYPE" "NRG3 WILD-TYPE" 
    TCGA-38-4631     TCGA-38-4632     TCGA-38-6178     TCGA-44-2655 
"NRG3 WILD-TYPE" "NRG3 WILD-TYPE" "NRG3 WILD-TYPE" "NRG3 WILD-TYPE" 
    TCGA-44-2656     TCGA-44-2657     TCGA-44-2659     TCGA-44-2661 
"NRG3 WILD-TYPE" "NRG3 WILD-TYPE" "NRG3 WILD-TYPE" "NRG3 WILD-TYPE" 
    TCGA-44-2662     TCGA-44-2665     TCGA-44-2666     TCGA-44-2668 
  "NRG3 MUTATED" "NRG3 WILD-TYPE" "NRG3 WILD-TYPE" "NRG3 WILD-TYPE" 
    TCGA-44-3396     TCGA-44-3398     TCGA-44-3918     TCGA-44-3919 
"NRG3 WILD-TYPE" "NRG3 WILD-TYPE" "NRG3 WILD-TYPE" "NRG3 WILD-TYPE" 
    TCGA-44-4112     TCGA-44-5643     TCGA-44-5645     TCGA-44-6144 
"NRG3 WILD-TYPE"   "NRG3 MUTATED" "NRG3 WILD-TYPE" "NRG3 WILD-TYPE" 
    TCGA-44-6145     TCGA-44-6146     TCGA-44-6147     TCGA-44-6148 
  "NRG3 MUTATED" "NRG3 WILD-TYPE" "NRG3 WILD-TYPE" "NRG3 WILD-TYPE" 
    TCGA-44-6774     TCGA-44-6775     TCGA-44-6776     TCGA-44-6777 
"NRG3 WILD-TYPE" "NRG3 WILD-TYPE" "NRG3 WILD-TYPE" "NRG3 WILD-TYPE" 
    TCGA-44-6778     TCGA-44-6779     TCGA-49-4486     TCGA-49-4487 
"NRG3 WILD-TYPE" "NRG3 WILD-TYPE" "NRG3 WILD-TYPE" "NRG3 WILD-TYPE" 
    TCGA-49-4488     TCGA-49-4490     TCGA-49-4494     TCGA-49-4501 
"NRG3 WILD-TYPE" "NRG3 WILD-TYPE" "NRG3 WILD-TYPE" "NRG3 WILD-TYPE" 
    TCGA-49-4505     TCGA-49-4506     TCGA-49-4507     TCGA-49-4510 
"NRG3 WILD-TYPE" "NRG3 WILD-TYPE" "NRG3 WILD-TYPE" "NRG3 WILD-TYPE" 
    TCGA-49-4512     TCGA-49-4514     TCGA-49-6742     TCGA-49-6743 
"NRG3 WILD-TYPE" "NRG3 WILD-TYPE" "NRG3 WILD-TYPE" "NRG3 WILD-TYPE" 
    TCGA-49-6744     TCGA-49-6745     TCGA-50-5044     TCGA-50-5045 
"NRG3 WILD-TYPE" "NRG3 WILD-TYPE" "NRG3 WILD-TYPE" "NRG3 WILD-TYPE" 
    TCGA-50-5049     TCGA-50-5051     TCGA-50-5055     TCGA-50-5066 
"NRG3 WILD-TYPE" "NRG3 WILD-TYPE" "NRG3 WILD-TYPE" "NRG3 WILD-TYPE" 
    TCGA-50-5068     TCGA-50-5072     TCGA-50-5930     TCGA-50-5931 
"NRG3 WILD-TYPE" "NRG3 WILD-TYPE" "NRG3 WILD-TYPE"   "NRG3 MUTATED" 
    TCGA-50-5932     TCGA-50-5933     TCGA-50-5935     TCGA-50-5936 
"NRG3 WILD-TYPE" "NRG3 WILD-TYPE"   "NRG3 MUTATED" "NRG3 WILD-TYPE" 
    TCGA-50-5939     TCGA-50-5941     TCGA-50-5942     TCGA-50-5944 
"NRG3 WILD-TYPE" "NRG3 WILD-TYPE" "NRG3 WILD-TYPE" "NRG3 WILD-TYPE" 
    TCGA-50-5946     TCGA-50-6590     TCGA-50-6591     TCGA-50-6592 
"NRG3 WILD-TYPE" "NRG3 WILD-TYPE" "NRG3 WILD-TYPE" "NRG3 WILD-TYPE" 
    TCGA-50-6593     TCGA-50-6594     TCGA-50-6595     TCGA-50-6597 
"NRG3 WILD-TYPE" "NRG3 WILD-TYPE" "NRG3 WILD-TYPE" "NRG3 WILD-TYPE" 
    TCGA-55-1592     TCGA-55-1594     TCGA-55-1595     TCGA-55-1596 
"NRG3 WILD-TYPE" "NRG3 WILD-TYPE" "NRG3 WILD-TYPE" "NRG3 WILD-TYPE" 
    TCGA-55-5899     TCGA-55-6543     TCGA-55-6642     TCGA-55-6712 
"NRG3 WILD-TYPE" "NRG3 WILD-TYPE" "NRG3 WILD-TYPE" "NRG3 WILD-TYPE" 
    TCGA-64-1676     TCGA-64-1677     TCGA-64-1678     TCGA-64-1680 
"NRG3 WILD-TYPE" "NRG3 WILD-TYPE" "NRG3 WILD-TYPE" "NRG3 WILD-TYPE" 
    TCGA-64-5774     TCGA-64-5775     TCGA-64-5778     TCGA-64-5779 
"NRG3 WILD-TYPE" "NRG3 WILD-TYPE" "NRG3 WILD-TYPE" "NRG3 WILD-TYPE" 
    TCGA-64-5781     TCGA-64-5815     TCGA-67-3770     TCGA-67-3771 
"NRG3 WILD-TYPE" "NRG3 WILD-TYPE" "NRG3 WILD-TYPE" "NRG3 WILD-TYPE" 
    TCGA-67-3772     TCGA-67-3773     TCGA-67-3774     TCGA-67-6215 
"NRG3 WILD-TYPE" "NRG3 WILD-TYPE" "NRG3 WILD-TYPE" "NRG3 WILD-TYPE" 
    TCGA-67-6216     TCGA-67-6217     TCGA-71-6725     TCGA-73-4658 
"NRG3 WILD-TYPE" "NRG3 WILD-TYPE" "NRG3 WILD-TYPE" "NRG3 WILD-TYPE" 
    TCGA-73-4659     TCGA-73-4662     TCGA-73-4666     TCGA-73-4668 
"NRG3 WILD-TYPE" "NRG3 WILD-TYPE" "NRG3 WILD-TYPE"   "NRG3 MUTATED" 
    TCGA-73-4670     TCGA-73-4675     TCGA-73-4676     TCGA-73-4677 
"NRG3 WILD-TYPE" "NRG3 WILD-TYPE" "NRG3 WILD-TYPE" "NRG3 WILD-TYPE" 
    TCGA-91-6828     TCGA-91-6829     TCGA-91-6831     TCGA-91-6835 
"NRG3 WILD-TYPE" "NRG3 WILD-TYPE" "NRG3 WILD-TYPE" "NRG3 WILD-TYPE" 
    TCGA-91-6836 
"NRG3 WILD-TYPE" 
[1] "hr=" "1.1"
D58V2, continuous
D58V3, binary
[1] "tbl2"
                cls
clus             [,1] [,2]
  NRG3 MUTATED      6    7
  NRG3 WILD-TYPE   87   72
        clus
vv       NRG3 MUTATED NRG3 WILD-TYPE
  FEMALE            6             87
  MALE              7             72
D58V4, continuous
[1] "Remove cluster labels:" "NRG3 MUTATED"          
clus
  NRG3 MUTATED NRG3 WILD-TYPE 
             2             10 
    TCGA-35-4122     TCGA-35-5375     TCGA-64-1677     TCGA-64-5778 
"NRG3 WILD-TYPE" "NRG3 WILD-TYPE" "NRG3 WILD-TYPE" "NRG3 WILD-TYPE" 
    TCGA-71-6725     TCGA-73-4659     TCGA-73-4662     TCGA-73-4666 
"NRG3 WILD-TYPE" "NRG3 WILD-TYPE" "NRG3 WILD-TYPE" "NRG3 WILD-TYPE" 
    TCGA-73-4676     TCGA-75-5122 
"NRG3 WILD-TYPE" "NRG3 WILD-TYPE" 
D58V5, multiclass
D58V6, multiclass
    clus
vv   NRG3 MUTATED NRG3 WILD-TYPE
  T1            3             38
  T2            7            101
  T3            1             13
  T4            2              6
D58V7, multiclass
       clus
vv      NRG3 MUTATED NRG3 WILD-TYPE
  N0               7             88
  N1               4             33
  N2+N3            2             33
D58V8, multiclass
    clus
vv   NRG3 MUTATED NRG3 WILD-TYPE
  M0           13            124
  M1            0              9
  MX            0             22
D58V9, multiclass
     clus
vv    NRG3 MUTATED NRG3 WILD-TYPE
  I              6             82
  II             4             29
  III            3             36
  IV             0              9
D58V10, binary
[1] "tbl2"
                cls
clus             [,1] [,2]
  NRG3 MUTATED      2   11
  NRG3 WILD-TYPE   14  145
     clus
vv    NRG3 MUTATED NRG3 WILD-TYPE
  NO             2             14
  YES           11            145
D58V11, continuous
D58V12, continuous
D58V13, multiclass
                                             clus
vv                                            NRG3 MUTATED NRG3 WILD-TYPE
  CURRENT REFORMED SMOKER FOR < OR = 15 YEARS            6             56
  CURRENT REFORMED SMOKER FOR > 15 YEARS                 2             44
  CURRENT SMOKER                                         3             25
  LIFELONG NON-SMOKER                                    0             24
D58V14, continuous

Clustering(59) Variable = SYT4 MUTATION ANALYSIS
D59V1, survival
                sevent
clus2             0  1
  SYT4 MUTATED    5  3
  SYT4 WILD-TYPE 94 47
  SYT4 MUTATED SYT4 WILD-TYPE 
             8            141 
  SYT4 MUTATED SYT4 WILD-TYPE 
             3             47 
$`SYT4 MUTATED`
TCGA-05-4382 TCGA-05-4396 TCGA-44-6774 TCGA-50-5931 TCGA-50-6590 TCGA-73-4666 
       19.92         9.96         5.42         8.78        42.31        20.28 
TCGA-73-4668 TCGA-73-4675 
       15.35         1.32 

$`SYT4 WILD-TYPE`
TCGA-05-4249 TCGA-05-4250 TCGA-05-4384 TCGA-05-4390 TCGA-05-4397 TCGA-05-4398 
       38.07         3.98        14.01        37.02        24.03        47.05 
TCGA-05-4402 TCGA-05-4405 TCGA-05-4415 TCGA-05-4417 TCGA-05-4418 TCGA-05-4420 
        8.02        20.05         2.96        14.93         8.98        29.95 
TCGA-05-4424 TCGA-05-4426 TCGA-05-4427 TCGA-05-4430 TCGA-05-4432 TCGA-05-4433 
       30.02        26.01        26.01        25.02        25.02        24.00 
TCGA-05-4434 TCGA-05-5420 TCGA-05-5423 TCGA-05-5425 TCGA-05-5429 TCGA-05-5715 
       15.02         1.02         4.96         2.96         0.99         2.04 
TCGA-35-3615 TCGA-35-4122 TCGA-35-4123 TCGA-35-5375 TCGA-38-4625 TCGA-38-4626 
        0.46         7.36         5.95         8.68        47.61        85.32 
TCGA-38-4627 TCGA-38-4628 TCGA-38-4629 TCGA-38-4630 TCGA-38-4631 TCGA-38-4632 
       37.71        49.02        28.37        35.28        11.64        44.61 
TCGA-38-6178 TCGA-44-2655 TCGA-44-2656 TCGA-44-2657 TCGA-44-2659 TCGA-44-2661 
        5.19        18.87        19.10        13.15        17.39         3.39 
TCGA-44-2662 TCGA-44-2665 TCGA-44-2666 TCGA-44-2668 TCGA-44-3396 TCGA-44-3398 
       15.78        13.15         3.19         8.09        10.22         8.32 
TCGA-44-3918 TCGA-44-3919 TCGA-44-4112 TCGA-44-5643 TCGA-44-5645 TCGA-44-6144 
        6.44         6.21         4.60         3.48         6.84         0.30 
TCGA-44-6145 TCGA-44-6146 TCGA-44-6147 TCGA-44-6148 TCGA-44-6775 TCGA-44-6776 
        3.35         9.93         7.76         3.12         2.70        63.72 
TCGA-44-6777 TCGA-44-6778 TCGA-44-6779 TCGA-49-4486 TCGA-49-4487 TCGA-49-4488 
       32.45        36.49        16.41        76.21        28.11        28.57 
TCGA-49-4490 TCGA-49-4494 TCGA-49-4501 TCGA-49-4505 TCGA-49-4506 TCGA-49-4507 
       12.66        35.54        46.72        14.07        32.84         8.81 
TCGA-49-4510 TCGA-49-4512 TCGA-49-4514 TCGA-49-6742 TCGA-49-6743 TCGA-49-6744 
       29.46        29.75        43.20        15.02        12.13        12.99 
TCGA-49-6745 TCGA-50-5044 TCGA-50-5045 TCGA-50-5049 TCGA-50-5051 TCGA-50-5055 
        4.93        20.48        71.47        48.82        14.96        25.81 
TCGA-50-5066 TCGA-50-5068 TCGA-50-5072 TCGA-50-5930 TCGA-50-5932 TCGA-50-5933 
        9.76        49.28         8.05         9.27        35.87        77.88 
TCGA-50-5935 TCGA-50-5936 TCGA-50-5939 TCGA-50-5941 TCGA-50-5942 TCGA-50-5944 
       21.47         8.45        15.12         9.37         4.44        12.26 
TCGA-50-5946 TCGA-50-6591 TCGA-50-6592 TCGA-50-6593 TCGA-50-6594 TCGA-50-6595 
       11.47         3.88        25.51        11.05        12.16         6.21 
TCGA-50-6597 TCGA-55-1592 TCGA-55-1594 TCGA-55-1595 TCGA-55-1596 TCGA-55-5899 
       33.37        23.05        38.73        48.62        45.17         2.86 
TCGA-55-6543 TCGA-55-6642 TCGA-55-6712 TCGA-64-1676 TCGA-64-1677 TCGA-64-1678 
        0.07        32.61         0.79        56.81        20.65        39.09 
TCGA-64-1680 TCGA-64-5774 TCGA-64-5775 TCGA-64-5778 TCGA-64-5779 TCGA-64-5781 
       37.02        83.84         0.10        30.44        16.67        39.52 
TCGA-64-5815 TCGA-67-3770 TCGA-67-3771 TCGA-67-3772 TCGA-67-3773 TCGA-67-3774 
        7.33         0.99         1.97         0.59         2.04         0.59 
TCGA-67-6215 TCGA-67-6216 TCGA-67-6217 TCGA-71-6725 TCGA-73-4658 TCGA-73-4659 
        0.89         0.69        13.87         2.01        52.57        23.38 
TCGA-73-4662 TCGA-73-4670 TCGA-73-4676 TCGA-73-4677 TCGA-91-6828 TCGA-91-6829 
       29.95         0.46         4.01         1.25         1.22        41.33 
TCGA-91-6831 TCGA-91-6835 TCGA-91-6836 
        1.28         1.15         0.36 

  SYT4 MUTATED SYT4 WILD-TYPE 
          1.32           0.07 
  SYT4 MUTATED SYT4 WILD-TYPE 
         42.31          85.32 
  SYT4 MUTATED SYT4 WILD-TYPE 
        12.655         13.870 
[1] "1.3 - 42.3 (12.7)" "0.1 - 85.3 (13.9)"
    TCGA-05-4249     TCGA-05-4250     TCGA-05-4382     TCGA-05-4384 
"SYT4 WILD-TYPE" "SYT4 WILD-TYPE"   "SYT4 MUTATED" "SYT4 WILD-TYPE" 
    TCGA-05-4390     TCGA-05-4396     TCGA-05-4397     TCGA-05-4398 
"SYT4 WILD-TYPE"   "SYT4 MUTATED" "SYT4 WILD-TYPE" "SYT4 WILD-TYPE" 
    TCGA-05-4402     TCGA-05-4405     TCGA-05-4415     TCGA-05-4417 
"SYT4 WILD-TYPE" "SYT4 WILD-TYPE" "SYT4 WILD-TYPE" "SYT4 WILD-TYPE" 
    TCGA-05-4418     TCGA-05-4420     TCGA-05-4424     TCGA-05-4426 
"SYT4 WILD-TYPE" "SYT4 WILD-TYPE" "SYT4 WILD-TYPE" "SYT4 WILD-TYPE" 
    TCGA-05-4427     TCGA-05-4430     TCGA-05-4432     TCGA-05-4433 
"SYT4 WILD-TYPE" "SYT4 WILD-TYPE" "SYT4 WILD-TYPE" "SYT4 WILD-TYPE" 
    TCGA-05-4434     TCGA-05-5420     TCGA-05-5423     TCGA-05-5425 
"SYT4 WILD-TYPE" "SYT4 WILD-TYPE" "SYT4 WILD-TYPE" "SYT4 WILD-TYPE" 
    TCGA-05-5429     TCGA-05-5715     TCGA-35-3615     TCGA-35-4122 
"SYT4 WILD-TYPE" "SYT4 WILD-TYPE" "SYT4 WILD-TYPE" "SYT4 WILD-TYPE" 
    TCGA-35-4123     TCGA-35-5375     TCGA-38-4625     TCGA-38-4626 
"SYT4 WILD-TYPE" "SYT4 WILD-TYPE" "SYT4 WILD-TYPE" "SYT4 WILD-TYPE" 
    TCGA-38-4627     TCGA-38-4628     TCGA-38-4629     TCGA-38-4630 
"SYT4 WILD-TYPE" "SYT4 WILD-TYPE" "SYT4 WILD-TYPE" "SYT4 WILD-TYPE" 
    TCGA-38-4631     TCGA-38-4632     TCGA-38-6178     TCGA-44-2655 
"SYT4 WILD-TYPE" "SYT4 WILD-TYPE" "SYT4 WILD-TYPE" "SYT4 WILD-TYPE" 
    TCGA-44-2656     TCGA-44-2657     TCGA-44-2659     TCGA-44-2661 
"SYT4 WILD-TYPE" "SYT4 WILD-TYPE" "SYT4 WILD-TYPE" "SYT4 WILD-TYPE" 
    TCGA-44-2662     TCGA-44-2665     TCGA-44-2666     TCGA-44-2668 
"SYT4 WILD-TYPE" "SYT4 WILD-TYPE" "SYT4 WILD-TYPE" "SYT4 WILD-TYPE" 
    TCGA-44-3396     TCGA-44-3398     TCGA-44-3918     TCGA-44-3919 
"SYT4 WILD-TYPE" "SYT4 WILD-TYPE" "SYT4 WILD-TYPE" "SYT4 WILD-TYPE" 
    TCGA-44-4112     TCGA-44-5643     TCGA-44-5645     TCGA-44-6144 
"SYT4 WILD-TYPE" "SYT4 WILD-TYPE" "SYT4 WILD-TYPE" "SYT4 WILD-TYPE" 
    TCGA-44-6145     TCGA-44-6146     TCGA-44-6147     TCGA-44-6148 
"SYT4 WILD-TYPE" "SYT4 WILD-TYPE" "SYT4 WILD-TYPE" "SYT4 WILD-TYPE" 
    TCGA-44-6774     TCGA-44-6775     TCGA-44-6776     TCGA-44-6777 
  "SYT4 MUTATED" "SYT4 WILD-TYPE" "SYT4 WILD-TYPE" "SYT4 WILD-TYPE" 
    TCGA-44-6778     TCGA-44-6779     TCGA-49-4486     TCGA-49-4487 
"SYT4 WILD-TYPE" "SYT4 WILD-TYPE" "SYT4 WILD-TYPE" "SYT4 WILD-TYPE" 
    TCGA-49-4488     TCGA-49-4490     TCGA-49-4494     TCGA-49-4501 
"SYT4 WILD-TYPE" "SYT4 WILD-TYPE" "SYT4 WILD-TYPE" "SYT4 WILD-TYPE" 
    TCGA-49-4505     TCGA-49-4506     TCGA-49-4507     TCGA-49-4510 
"SYT4 WILD-TYPE" "SYT4 WILD-TYPE" "SYT4 WILD-TYPE" "SYT4 WILD-TYPE" 
    TCGA-49-4512     TCGA-49-4514     TCGA-49-6742     TCGA-49-6743 
"SYT4 WILD-TYPE" "SYT4 WILD-TYPE" "SYT4 WILD-TYPE" "SYT4 WILD-TYPE" 
    TCGA-49-6744     TCGA-49-6745     TCGA-50-5044     TCGA-50-5045 
"SYT4 WILD-TYPE" "SYT4 WILD-TYPE" "SYT4 WILD-TYPE" "SYT4 WILD-TYPE" 
    TCGA-50-5049     TCGA-50-5051     TCGA-50-5055     TCGA-50-5066 
"SYT4 WILD-TYPE" "SYT4 WILD-TYPE" "SYT4 WILD-TYPE" "SYT4 WILD-TYPE" 
    TCGA-50-5068     TCGA-50-5072     TCGA-50-5930     TCGA-50-5931 
"SYT4 WILD-TYPE" "SYT4 WILD-TYPE" "SYT4 WILD-TYPE"   "SYT4 MUTATED" 
    TCGA-50-5932     TCGA-50-5933     TCGA-50-5935     TCGA-50-5936 
"SYT4 WILD-TYPE" "SYT4 WILD-TYPE" "SYT4 WILD-TYPE" "SYT4 WILD-TYPE" 
    TCGA-50-5939     TCGA-50-5941     TCGA-50-5942     TCGA-50-5944 
"SYT4 WILD-TYPE" "SYT4 WILD-TYPE" "SYT4 WILD-TYPE" "SYT4 WILD-TYPE" 
    TCGA-50-5946     TCGA-50-6590     TCGA-50-6591     TCGA-50-6592 
"SYT4 WILD-TYPE"   "SYT4 MUTATED" "SYT4 WILD-TYPE" "SYT4 WILD-TYPE" 
    TCGA-50-6593     TCGA-50-6594     TCGA-50-6595     TCGA-50-6597 
"SYT4 WILD-TYPE" "SYT4 WILD-TYPE" "SYT4 WILD-TYPE" "SYT4 WILD-TYPE" 
    TCGA-55-1592     TCGA-55-1594     TCGA-55-1595     TCGA-55-1596 
"SYT4 WILD-TYPE" "SYT4 WILD-TYPE" "SYT4 WILD-TYPE" "SYT4 WILD-TYPE" 
    TCGA-55-5899     TCGA-55-6543     TCGA-55-6642     TCGA-55-6712 
"SYT4 WILD-TYPE" "SYT4 WILD-TYPE" "SYT4 WILD-TYPE" "SYT4 WILD-TYPE" 
    TCGA-64-1676     TCGA-64-1677     TCGA-64-1678     TCGA-64-1680 
"SYT4 WILD-TYPE" "SYT4 WILD-TYPE" "SYT4 WILD-TYPE" "SYT4 WILD-TYPE" 
    TCGA-64-5774     TCGA-64-5775     TCGA-64-5778     TCGA-64-5779 
"SYT4 WILD-TYPE" "SYT4 WILD-TYPE" "SYT4 WILD-TYPE" "SYT4 WILD-TYPE" 
    TCGA-64-5781     TCGA-64-5815     TCGA-67-3770     TCGA-67-3771 
"SYT4 WILD-TYPE" "SYT4 WILD-TYPE" "SYT4 WILD-TYPE" "SYT4 WILD-TYPE" 
    TCGA-67-3772     TCGA-67-3773     TCGA-67-3774     TCGA-67-6215 
"SYT4 WILD-TYPE" "SYT4 WILD-TYPE" "SYT4 WILD-TYPE" "SYT4 WILD-TYPE" 
    TCGA-67-6216     TCGA-67-6217     TCGA-71-6725     TCGA-73-4658 
"SYT4 WILD-TYPE" "SYT4 WILD-TYPE" "SYT4 WILD-TYPE" "SYT4 WILD-TYPE" 
    TCGA-73-4659     TCGA-73-4662     TCGA-73-4666     TCGA-73-4668 
"SYT4 WILD-TYPE" "SYT4 WILD-TYPE"   "SYT4 MUTATED"   "SYT4 MUTATED" 
    TCGA-73-4670     TCGA-73-4675     TCGA-73-4676     TCGA-73-4677 
"SYT4 WILD-TYPE"   "SYT4 MUTATED" "SYT4 WILD-TYPE" "SYT4 WILD-TYPE" 
    TCGA-91-6828     TCGA-91-6829     TCGA-91-6831     TCGA-91-6835 
"SYT4 WILD-TYPE" "SYT4 WILD-TYPE" "SYT4 WILD-TYPE" "SYT4 WILD-TYPE" 
    TCGA-91-6836 
"SYT4 WILD-TYPE" 
    TCGA-05-4249     TCGA-05-4250     TCGA-05-4382     TCGA-05-4384 
"SYT4 WILD-TYPE" "SYT4 WILD-TYPE"   "SYT4 MUTATED" "SYT4 WILD-TYPE" 
    TCGA-05-4390     TCGA-05-4396     TCGA-05-4397     TCGA-05-4398 
"SYT4 WILD-TYPE"   "SYT4 MUTATED" "SYT4 WILD-TYPE" "SYT4 WILD-TYPE" 
    TCGA-05-4402     TCGA-05-4405     TCGA-05-4415     TCGA-05-4417 
"SYT4 WILD-TYPE" "SYT4 WILD-TYPE" "SYT4 WILD-TYPE" "SYT4 WILD-TYPE" 
    TCGA-05-4418     TCGA-05-4420     TCGA-05-4424     TCGA-05-4426 
"SYT4 WILD-TYPE" "SYT4 WILD-TYPE" "SYT4 WILD-TYPE" "SYT4 WILD-TYPE" 
    TCGA-05-4427     TCGA-05-4430     TCGA-05-4432     TCGA-05-4433 
"SYT4 WILD-TYPE" "SYT4 WILD-TYPE" "SYT4 WILD-TYPE" "SYT4 WILD-TYPE" 
    TCGA-05-4434     TCGA-05-5420     TCGA-05-5423     TCGA-05-5425 
"SYT4 WILD-TYPE" "SYT4 WILD-TYPE" "SYT4 WILD-TYPE" "SYT4 WILD-TYPE" 
    TCGA-05-5429     TCGA-05-5715     TCGA-35-3615     TCGA-35-4122 
"SYT4 WILD-TYPE" "SYT4 WILD-TYPE" "SYT4 WILD-TYPE" "SYT4 WILD-TYPE" 
    TCGA-35-4123     TCGA-35-5375     TCGA-38-4625     TCGA-38-4626 
"SYT4 WILD-TYPE" "SYT4 WILD-TYPE" "SYT4 WILD-TYPE" "SYT4 WILD-TYPE" 
    TCGA-38-4627     TCGA-38-4628     TCGA-38-4629     TCGA-38-4630 
"SYT4 WILD-TYPE" "SYT4 WILD-TYPE" "SYT4 WILD-TYPE" "SYT4 WILD-TYPE" 
    TCGA-38-4631     TCGA-38-4632     TCGA-38-6178     TCGA-44-2655 
"SYT4 WILD-TYPE" "SYT4 WILD-TYPE" "SYT4 WILD-TYPE" "SYT4 WILD-TYPE" 
    TCGA-44-2656     TCGA-44-2657     TCGA-44-2659     TCGA-44-2661 
"SYT4 WILD-TYPE" "SYT4 WILD-TYPE" "SYT4 WILD-TYPE" "SYT4 WILD-TYPE" 
    TCGA-44-2662     TCGA-44-2665     TCGA-44-2666     TCGA-44-2668 
"SYT4 WILD-TYPE" "SYT4 WILD-TYPE" "SYT4 WILD-TYPE" "SYT4 WILD-TYPE" 
    TCGA-44-3396     TCGA-44-3398     TCGA-44-3918     TCGA-44-3919 
"SYT4 WILD-TYPE" "SYT4 WILD-TYPE" "SYT4 WILD-TYPE" "SYT4 WILD-TYPE" 
    TCGA-44-4112     TCGA-44-5643     TCGA-44-5645     TCGA-44-6144 
"SYT4 WILD-TYPE" "SYT4 WILD-TYPE" "SYT4 WILD-TYPE" "SYT4 WILD-TYPE" 
    TCGA-44-6145     TCGA-44-6146     TCGA-44-6147     TCGA-44-6148 
"SYT4 WILD-TYPE" "SYT4 WILD-TYPE" "SYT4 WILD-TYPE" "SYT4 WILD-TYPE" 
    TCGA-44-6774     TCGA-44-6775     TCGA-44-6776     TCGA-44-6777 
  "SYT4 MUTATED" "SYT4 WILD-TYPE" "SYT4 WILD-TYPE" "SYT4 WILD-TYPE" 
    TCGA-44-6778     TCGA-44-6779     TCGA-49-4486     TCGA-49-4487 
"SYT4 WILD-TYPE" "SYT4 WILD-TYPE" "SYT4 WILD-TYPE" "SYT4 WILD-TYPE" 
    TCGA-49-4488     TCGA-49-4490     TCGA-49-4494     TCGA-49-4501 
"SYT4 WILD-TYPE" "SYT4 WILD-TYPE" "SYT4 WILD-TYPE" "SYT4 WILD-TYPE" 
    TCGA-49-4505     TCGA-49-4506     TCGA-49-4507     TCGA-49-4510 
"SYT4 WILD-TYPE" "SYT4 WILD-TYPE" "SYT4 WILD-TYPE" "SYT4 WILD-TYPE" 
    TCGA-49-4512     TCGA-49-4514     TCGA-49-6742     TCGA-49-6743 
"SYT4 WILD-TYPE" "SYT4 WILD-TYPE" "SYT4 WILD-TYPE" "SYT4 WILD-TYPE" 
    TCGA-49-6744     TCGA-49-6745     TCGA-50-5044     TCGA-50-5045 
"SYT4 WILD-TYPE" "SYT4 WILD-TYPE" "SYT4 WILD-TYPE" "SYT4 WILD-TYPE" 
    TCGA-50-5049     TCGA-50-5051     TCGA-50-5055     TCGA-50-5066 
"SYT4 WILD-TYPE" "SYT4 WILD-TYPE" "SYT4 WILD-TYPE" "SYT4 WILD-TYPE" 
    TCGA-50-5068     TCGA-50-5072     TCGA-50-5930     TCGA-50-5931 
"SYT4 WILD-TYPE" "SYT4 WILD-TYPE" "SYT4 WILD-TYPE"   "SYT4 MUTATED" 
    TCGA-50-5932     TCGA-50-5933     TCGA-50-5935     TCGA-50-5936 
"SYT4 WILD-TYPE" "SYT4 WILD-TYPE" "SYT4 WILD-TYPE" "SYT4 WILD-TYPE" 
    TCGA-50-5939     TCGA-50-5941     TCGA-50-5942     TCGA-50-5944 
"SYT4 WILD-TYPE" "SYT4 WILD-TYPE" "SYT4 WILD-TYPE" "SYT4 WILD-TYPE" 
    TCGA-50-5946     TCGA-50-6590     TCGA-50-6591     TCGA-50-6592 
"SYT4 WILD-TYPE"   "SYT4 MUTATED" "SYT4 WILD-TYPE" "SYT4 WILD-TYPE" 
    TCGA-50-6593     TCGA-50-6594     TCGA-50-6595     TCGA-50-6597 
"SYT4 WILD-TYPE" "SYT4 WILD-TYPE" "SYT4 WILD-TYPE" "SYT4 WILD-TYPE" 
    TCGA-55-1592     TCGA-55-1594     TCGA-55-1595     TCGA-55-1596 
"SYT4 WILD-TYPE" "SYT4 WILD-TYPE" "SYT4 WILD-TYPE" "SYT4 WILD-TYPE" 
    TCGA-55-5899     TCGA-55-6543     TCGA-55-6642     TCGA-55-6712 
"SYT4 WILD-TYPE" "SYT4 WILD-TYPE" "SYT4 WILD-TYPE" "SYT4 WILD-TYPE" 
    TCGA-64-1676     TCGA-64-1677     TCGA-64-1678     TCGA-64-1680 
"SYT4 WILD-TYPE" "SYT4 WILD-TYPE" "SYT4 WILD-TYPE" "SYT4 WILD-TYPE" 
    TCGA-64-5774     TCGA-64-5775     TCGA-64-5778     TCGA-64-5779 
"SYT4 WILD-TYPE" "SYT4 WILD-TYPE" "SYT4 WILD-TYPE" "SYT4 WILD-TYPE" 
    TCGA-64-5781     TCGA-64-5815     TCGA-67-3770     TCGA-67-3771 
"SYT4 WILD-TYPE" "SYT4 WILD-TYPE" "SYT4 WILD-TYPE" "SYT4 WILD-TYPE" 
    TCGA-67-3772     TCGA-67-3773     TCGA-67-3774     TCGA-67-6215 
"SYT4 WILD-TYPE" "SYT4 WILD-TYPE" "SYT4 WILD-TYPE" "SYT4 WILD-TYPE" 
    TCGA-67-6216     TCGA-67-6217     TCGA-71-6725     TCGA-73-4658 
"SYT4 WILD-TYPE" "SYT4 WILD-TYPE" "SYT4 WILD-TYPE" "SYT4 WILD-TYPE" 
    TCGA-73-4659     TCGA-73-4662     TCGA-73-4666     TCGA-73-4668 
"SYT4 WILD-TYPE" "SYT4 WILD-TYPE"   "SYT4 MUTATED"   "SYT4 MUTATED" 
    TCGA-73-4670     TCGA-73-4675     TCGA-73-4676     TCGA-73-4677 
"SYT4 WILD-TYPE"   "SYT4 MUTATED" "SYT4 WILD-TYPE" "SYT4 WILD-TYPE" 
    TCGA-91-6828     TCGA-91-6829     TCGA-91-6831     TCGA-91-6835 
"SYT4 WILD-TYPE" "SYT4 WILD-TYPE" "SYT4 WILD-TYPE" "SYT4 WILD-TYPE" 
    TCGA-91-6836 
"SYT4 WILD-TYPE" 
    TCGA-05-4249     TCGA-05-4250     TCGA-05-4382     TCGA-05-4384 
"SYT4 WILD-TYPE" "SYT4 WILD-TYPE"   "SYT4 MUTATED" "SYT4 WILD-TYPE" 
    TCGA-05-4390     TCGA-05-4396     TCGA-05-4397     TCGA-05-4398 
"SYT4 WILD-TYPE"   "SYT4 MUTATED" "SYT4 WILD-TYPE" "SYT4 WILD-TYPE" 
    TCGA-05-4402     TCGA-05-4405     TCGA-05-4415     TCGA-05-4417 
"SYT4 WILD-TYPE" "SYT4 WILD-TYPE" "SYT4 WILD-TYPE" "SYT4 WILD-TYPE" 
    TCGA-05-4418     TCGA-05-4420     TCGA-05-4424     TCGA-05-4426 
"SYT4 WILD-TYPE" "SYT4 WILD-TYPE" "SYT4 WILD-TYPE" "SYT4 WILD-TYPE" 
    TCGA-05-4427     TCGA-05-4430     TCGA-05-4432     TCGA-05-4433 
"SYT4 WILD-TYPE" "SYT4 WILD-TYPE" "SYT4 WILD-TYPE" "SYT4 WILD-TYPE" 
    TCGA-05-4434     TCGA-05-5420     TCGA-05-5423     TCGA-05-5425 
"SYT4 WILD-TYPE" "SYT4 WILD-TYPE" "SYT4 WILD-TYPE" "SYT4 WILD-TYPE" 
    TCGA-05-5429     TCGA-05-5715     TCGA-35-3615     TCGA-35-4122 
"SYT4 WILD-TYPE" "SYT4 WILD-TYPE" "SYT4 WILD-TYPE" "SYT4 WILD-TYPE" 
    TCGA-35-4123     TCGA-35-5375     TCGA-38-4625     TCGA-38-4626 
"SYT4 WILD-TYPE" "SYT4 WILD-TYPE" "SYT4 WILD-TYPE" "SYT4 WILD-TYPE" 
    TCGA-38-4627     TCGA-38-4628     TCGA-38-4629     TCGA-38-4630 
"SYT4 WILD-TYPE" "SYT4 WILD-TYPE" "SYT4 WILD-TYPE" "SYT4 WILD-TYPE" 
    TCGA-38-4631     TCGA-38-4632     TCGA-38-6178     TCGA-44-2655 
"SYT4 WILD-TYPE" "SYT4 WILD-TYPE" "SYT4 WILD-TYPE" "SYT4 WILD-TYPE" 
    TCGA-44-2656     TCGA-44-2657     TCGA-44-2659     TCGA-44-2661 
"SYT4 WILD-TYPE" "SYT4 WILD-TYPE" "SYT4 WILD-TYPE" "SYT4 WILD-TYPE" 
    TCGA-44-2662     TCGA-44-2665     TCGA-44-2666     TCGA-44-2668 
"SYT4 WILD-TYPE" "SYT4 WILD-TYPE" "SYT4 WILD-TYPE" "SYT4 WILD-TYPE" 
    TCGA-44-3396     TCGA-44-3398     TCGA-44-3918     TCGA-44-3919 
"SYT4 WILD-TYPE" "SYT4 WILD-TYPE" "SYT4 WILD-TYPE" "SYT4 WILD-TYPE" 
    TCGA-44-4112     TCGA-44-5643     TCGA-44-5645     TCGA-44-6144 
"SYT4 WILD-TYPE" "SYT4 WILD-TYPE" "SYT4 WILD-TYPE" "SYT4 WILD-TYPE" 
    TCGA-44-6145     TCGA-44-6146     TCGA-44-6147     TCGA-44-6148 
"SYT4 WILD-TYPE" "SYT4 WILD-TYPE" "SYT4 WILD-TYPE" "SYT4 WILD-TYPE" 
    TCGA-44-6774     TCGA-44-6775     TCGA-44-6776     TCGA-44-6777 
  "SYT4 MUTATED" "SYT4 WILD-TYPE" "SYT4 WILD-TYPE" "SYT4 WILD-TYPE" 
    TCGA-44-6778     TCGA-44-6779     TCGA-49-4486     TCGA-49-4487 
"SYT4 WILD-TYPE" "SYT4 WILD-TYPE" "SYT4 WILD-TYPE" "SYT4 WILD-TYPE" 
    TCGA-49-4488     TCGA-49-4490     TCGA-49-4494     TCGA-49-4501 
"SYT4 WILD-TYPE" "SYT4 WILD-TYPE" "SYT4 WILD-TYPE" "SYT4 WILD-TYPE" 
    TCGA-49-4505     TCGA-49-4506     TCGA-49-4507     TCGA-49-4510 
"SYT4 WILD-TYPE" "SYT4 WILD-TYPE" "SYT4 WILD-TYPE" "SYT4 WILD-TYPE" 
    TCGA-49-4512     TCGA-49-4514     TCGA-49-6742     TCGA-49-6743 
"SYT4 WILD-TYPE" "SYT4 WILD-TYPE" "SYT4 WILD-TYPE" "SYT4 WILD-TYPE" 
    TCGA-49-6744     TCGA-49-6745     TCGA-50-5044     TCGA-50-5045 
"SYT4 WILD-TYPE" "SYT4 WILD-TYPE" "SYT4 WILD-TYPE" "SYT4 WILD-TYPE" 
    TCGA-50-5049     TCGA-50-5051     TCGA-50-5055     TCGA-50-5066 
"SYT4 WILD-TYPE" "SYT4 WILD-TYPE" "SYT4 WILD-TYPE" "SYT4 WILD-TYPE" 
    TCGA-50-5068     TCGA-50-5072     TCGA-50-5930     TCGA-50-5931 
"SYT4 WILD-TYPE" "SYT4 WILD-TYPE" "SYT4 WILD-TYPE"   "SYT4 MUTATED" 
    TCGA-50-5932     TCGA-50-5933     TCGA-50-5935     TCGA-50-5936 
"SYT4 WILD-TYPE" "SYT4 WILD-TYPE" "SYT4 WILD-TYPE" "SYT4 WILD-TYPE" 
    TCGA-50-5939     TCGA-50-5941     TCGA-50-5942     TCGA-50-5944 
"SYT4 WILD-TYPE" "SYT4 WILD-TYPE" "SYT4 WILD-TYPE" "SYT4 WILD-TYPE" 
    TCGA-50-5946     TCGA-50-6590     TCGA-50-6591     TCGA-50-6592 
"SYT4 WILD-TYPE"   "SYT4 MUTATED" "SYT4 WILD-TYPE" "SYT4 WILD-TYPE" 
    TCGA-50-6593     TCGA-50-6594     TCGA-50-6595     TCGA-50-6597 
"SYT4 WILD-TYPE" "SYT4 WILD-TYPE" "SYT4 WILD-TYPE" "SYT4 WILD-TYPE" 
    TCGA-55-1592     TCGA-55-1594     TCGA-55-1595     TCGA-55-1596 
"SYT4 WILD-TYPE" "SYT4 WILD-TYPE" "SYT4 WILD-TYPE" "SYT4 WILD-TYPE" 
    TCGA-55-5899     TCGA-55-6543     TCGA-55-6642     TCGA-55-6712 
"SYT4 WILD-TYPE" "SYT4 WILD-TYPE" "SYT4 WILD-TYPE" "SYT4 WILD-TYPE" 
    TCGA-64-1676     TCGA-64-1677     TCGA-64-1678     TCGA-64-1680 
"SYT4 WILD-TYPE" "SYT4 WILD-TYPE" "SYT4 WILD-TYPE" "SYT4 WILD-TYPE" 
    TCGA-64-5774     TCGA-64-5775     TCGA-64-5778     TCGA-64-5779 
"SYT4 WILD-TYPE" "SYT4 WILD-TYPE" "SYT4 WILD-TYPE" "SYT4 WILD-TYPE" 
    TCGA-64-5781     TCGA-64-5815     TCGA-67-3770     TCGA-67-3771 
"SYT4 WILD-TYPE" "SYT4 WILD-TYPE" "SYT4 WILD-TYPE" "SYT4 WILD-TYPE" 
    TCGA-67-3772     TCGA-67-3773     TCGA-67-3774     TCGA-67-6215 
"SYT4 WILD-TYPE" "SYT4 WILD-TYPE" "SYT4 WILD-TYPE" "SYT4 WILD-TYPE" 
    TCGA-67-6216     TCGA-67-6217     TCGA-71-6725     TCGA-73-4658 
"SYT4 WILD-TYPE" "SYT4 WILD-TYPE" "SYT4 WILD-TYPE" "SYT4 WILD-TYPE" 
    TCGA-73-4659     TCGA-73-4662     TCGA-73-4666     TCGA-73-4668 
"SYT4 WILD-TYPE" "SYT4 WILD-TYPE"   "SYT4 MUTATED"   "SYT4 MUTATED" 
    TCGA-73-4670     TCGA-73-4675     TCGA-73-4676     TCGA-73-4677 
"SYT4 WILD-TYPE"   "SYT4 MUTATED" "SYT4 WILD-TYPE" "SYT4 WILD-TYPE" 
    TCGA-91-6828     TCGA-91-6829     TCGA-91-6831     TCGA-91-6835 
"SYT4 WILD-TYPE" "SYT4 WILD-TYPE" "SYT4 WILD-TYPE" "SYT4 WILD-TYPE" 
    TCGA-91-6836 
"SYT4 WILD-TYPE" 
[1] "hr=" "1.8"
D59V2, continuous
D59V3, binary
[1] "tbl2"
                cls
clus             [,1] [,2]
  SYT4 MUTATED      6    5
  SYT4 WILD-TYPE   87   74
        clus
vv       SYT4 MUTATED SYT4 WILD-TYPE
  FEMALE            6             87
  MALE              5             74
D59V4, continuous
D59V5, multiclass
D59V6, multiclass
    clus
vv   SYT4 MUTATED SYT4 WILD-TYPE
  T1            2             39
  T2            6            102
  T3            2             12
  T4            1              7
D59V7, multiclass
       clus
vv      SYT4 MUTATED SYT4 WILD-TYPE
  N0               6             89
  N1               3             34
  N2+N3            2             33
D59V8, multiclass
    clus
vv   SYT4 MUTATED SYT4 WILD-TYPE
  M0           10            127
  M1            1              8
  MX            0             22
D59V9, multiclass
     clus
vv    SYT4 MUTATED SYT4 WILD-TYPE
  I              5             83
  II             1             32
  III            4             35
  IV             1              8
D59V10, binary
[1] "tbl2"
                cls
clus             [,1] [,2]
  SYT4 MUTATED      1   10
  SYT4 WILD-TYPE   15  146
     clus
vv    SYT4 MUTATED SYT4 WILD-TYPE
  NO             1             15
  YES           10            146
D59V11, continuous
D59V12, continuous
D59V13, multiclass
                                             clus
vv                                            SYT4 MUTATED SYT4 WILD-TYPE
  CURRENT REFORMED SMOKER FOR < OR = 15 YEARS            6             56
  CURRENT REFORMED SMOKER FOR > 15 YEARS                 3             43
  CURRENT SMOKER                                         1             27
  LIFELONG NON-SMOKER                                    0             24
D59V14, continuous

Clustering(60) Variable = OR52E4 MUTATION ANALYSIS
D60V1, survival
                  sevent
clus2               0  1
  OR52E4 MUTATED    3  1
  OR52E4 WILD-TYPE 96 49
  OR52E4 MUTATED OR52E4 WILD-TYPE 
               4              145 
  OR52E4 MUTATED OR52E4 WILD-TYPE 
               1               49 
$`OR52E4 MUTATED`
TCGA-05-4382 TCGA-05-4397 TCGA-55-5899 TCGA-64-1678 
       19.92        24.03         2.86        39.09 

$`OR52E4 WILD-TYPE`
TCGA-05-4249 TCGA-05-4250 TCGA-05-4384 TCGA-05-4390 TCGA-05-4396 TCGA-05-4398 
       38.07         3.98        14.01        37.02         9.96        47.05 
TCGA-05-4402 TCGA-05-4405 TCGA-05-4415 TCGA-05-4417 TCGA-05-4418 TCGA-05-4420 
        8.02        20.05         2.96        14.93         8.98        29.95 
TCGA-05-4424 TCGA-05-4426 TCGA-05-4427 TCGA-05-4430 TCGA-05-4432 TCGA-05-4433 
       30.02        26.01        26.01        25.02        25.02        24.00 
TCGA-05-4434 TCGA-05-5420 TCGA-05-5423 TCGA-05-5425 TCGA-05-5429 TCGA-05-5715 
       15.02         1.02         4.96         2.96         0.99         2.04 
TCGA-35-3615 TCGA-35-4122 TCGA-35-4123 TCGA-35-5375 TCGA-38-4625 TCGA-38-4626 
        0.46         7.36         5.95         8.68        47.61        85.32 
TCGA-38-4627 TCGA-38-4628 TCGA-38-4629 TCGA-38-4630 TCGA-38-4631 TCGA-38-4632 
       37.71        49.02        28.37        35.28        11.64        44.61 
TCGA-38-6178 TCGA-44-2655 TCGA-44-2656 TCGA-44-2657 TCGA-44-2659 TCGA-44-2661 
        5.19        18.87        19.10        13.15        17.39         3.39 
TCGA-44-2662 TCGA-44-2665 TCGA-44-2666 TCGA-44-2668 TCGA-44-3396 TCGA-44-3398 
       15.78        13.15         3.19         8.09        10.22         8.32 
TCGA-44-3918 TCGA-44-3919 TCGA-44-4112 TCGA-44-5643 TCGA-44-5645 TCGA-44-6144 
        6.44         6.21         4.60         3.48         6.84         0.30 
TCGA-44-6145 TCGA-44-6146 TCGA-44-6147 TCGA-44-6148 TCGA-44-6774 TCGA-44-6775 
        3.35         9.93         7.76         3.12         5.42         2.70 
TCGA-44-6776 TCGA-44-6777 TCGA-44-6778 TCGA-44-6779 TCGA-49-4486 TCGA-49-4487 
       63.72        32.45        36.49        16.41        76.21        28.11 
TCGA-49-4488 TCGA-49-4490 TCGA-49-4494 TCGA-49-4501 TCGA-49-4505 TCGA-49-4506 
       28.57        12.66        35.54        46.72        14.07        32.84 
TCGA-49-4507 TCGA-49-4510 TCGA-49-4512 TCGA-49-4514 TCGA-49-6742 TCGA-49-6743 
        8.81        29.46        29.75        43.20        15.02        12.13 
TCGA-49-6744 TCGA-49-6745 TCGA-50-5044 TCGA-50-5045 TCGA-50-5049 TCGA-50-5051 
       12.99         4.93        20.48        71.47        48.82        14.96 
TCGA-50-5055 TCGA-50-5066 TCGA-50-5068 TCGA-50-5072 TCGA-50-5930 TCGA-50-5931 
       25.81         9.76        49.28         8.05         9.27         8.78 
TCGA-50-5932 TCGA-50-5933 TCGA-50-5935 TCGA-50-5936 TCGA-50-5939 TCGA-50-5941 
       35.87        77.88        21.47         8.45        15.12         9.37 
TCGA-50-5942 TCGA-50-5944 TCGA-50-5946 TCGA-50-6590 TCGA-50-6591 TCGA-50-6592 
        4.44        12.26        11.47        42.31         3.88        25.51 
TCGA-50-6593 TCGA-50-6594 TCGA-50-6595 TCGA-50-6597 TCGA-55-1592 TCGA-55-1594 
       11.05        12.16         6.21        33.37        23.05        38.73 
TCGA-55-1595 TCGA-55-1596 TCGA-55-6543 TCGA-55-6642 TCGA-55-6712 TCGA-64-1676 
       48.62        45.17         0.07        32.61         0.79        56.81 
TCGA-64-1677 TCGA-64-1680 TCGA-64-5774 TCGA-64-5775 TCGA-64-5778 TCGA-64-5779 
       20.65        37.02        83.84         0.10        30.44        16.67 
TCGA-64-5781 TCGA-64-5815 TCGA-67-3770 TCGA-67-3771 TCGA-67-3772 TCGA-67-3773 
       39.52         7.33         0.99         1.97         0.59         2.04 
TCGA-67-3774 TCGA-67-6215 TCGA-67-6216 TCGA-67-6217 TCGA-71-6725 TCGA-73-4658 
        0.59         0.89         0.69        13.87         2.01        52.57 
TCGA-73-4659 TCGA-73-4662 TCGA-73-4666 TCGA-73-4668 TCGA-73-4670 TCGA-73-4675 
       23.38        29.95        20.28        15.35         0.46         1.32 
TCGA-73-4676 TCGA-73-4677 TCGA-91-6828 TCGA-91-6829 TCGA-91-6831 TCGA-91-6835 
        4.01         1.25         1.22        41.33         1.28         1.15 
TCGA-91-6836 
        0.36 

  OR52E4 MUTATED OR52E4 WILD-TYPE 
            2.86             0.07 
  OR52E4 MUTATED OR52E4 WILD-TYPE 
           39.09            85.32 
  OR52E4 MUTATED OR52E4 WILD-TYPE 
          21.975           13.150 
[1] "2.9 - 39.1 (22.0)" "0.1 - 85.3 (13.2)"
      TCGA-05-4249       TCGA-05-4250       TCGA-05-4382       TCGA-05-4384 
"OR52E4 WILD-TYPE" "OR52E4 WILD-TYPE"   "OR52E4 MUTATED" "OR52E4 WILD-TYPE" 
      TCGA-05-4390       TCGA-05-4396       TCGA-05-4397       TCGA-05-4398 
"OR52E4 WILD-TYPE" "OR52E4 WILD-TYPE"   "OR52E4 MUTATED" "OR52E4 WILD-TYPE" 
      TCGA-05-4402       TCGA-05-4405       TCGA-05-4415       TCGA-05-4417 
"OR52E4 WILD-TYPE" "OR52E4 WILD-TYPE" "OR52E4 WILD-TYPE" "OR52E4 WILD-TYPE" 
      TCGA-05-4418       TCGA-05-4420       TCGA-05-4424       TCGA-05-4426 
"OR52E4 WILD-TYPE" "OR52E4 WILD-TYPE" "OR52E4 WILD-TYPE" "OR52E4 WILD-TYPE" 
      TCGA-05-4427       TCGA-05-4430       TCGA-05-4432       TCGA-05-4433 
"OR52E4 WILD-TYPE" "OR52E4 WILD-TYPE" "OR52E4 WILD-TYPE" "OR52E4 WILD-TYPE" 
      TCGA-05-4434       TCGA-05-5420       TCGA-05-5423       TCGA-05-5425 
"OR52E4 WILD-TYPE" "OR52E4 WILD-TYPE" "OR52E4 WILD-TYPE" "OR52E4 WILD-TYPE" 
      TCGA-05-5429       TCGA-05-5715       TCGA-35-3615       TCGA-35-4122 
"OR52E4 WILD-TYPE" "OR52E4 WILD-TYPE" "OR52E4 WILD-TYPE" "OR52E4 WILD-TYPE" 
      TCGA-35-4123       TCGA-35-5375       TCGA-38-4625       TCGA-38-4626 
"OR52E4 WILD-TYPE" "OR52E4 WILD-TYPE" "OR52E4 WILD-TYPE" "OR52E4 WILD-TYPE" 
      TCGA-38-4627       TCGA-38-4628       TCGA-38-4629       TCGA-38-4630 
"OR52E4 WILD-TYPE" "OR52E4 WILD-TYPE" "OR52E4 WILD-TYPE" "OR52E4 WILD-TYPE" 
      TCGA-38-4631       TCGA-38-4632       TCGA-38-6178       TCGA-44-2655 
"OR52E4 WILD-TYPE" "OR52E4 WILD-TYPE" "OR52E4 WILD-TYPE" "OR52E4 WILD-TYPE" 
      TCGA-44-2656       TCGA-44-2657       TCGA-44-2659       TCGA-44-2661 
"OR52E4 WILD-TYPE" "OR52E4 WILD-TYPE" "OR52E4 WILD-TYPE" "OR52E4 WILD-TYPE" 
      TCGA-44-2662       TCGA-44-2665       TCGA-44-2666       TCGA-44-2668 
"OR52E4 WILD-TYPE" "OR52E4 WILD-TYPE" "OR52E4 WILD-TYPE" "OR52E4 WILD-TYPE" 
      TCGA-44-3396       TCGA-44-3398       TCGA-44-3918       TCGA-44-3919 
"OR52E4 WILD-TYPE" "OR52E4 WILD-TYPE" "OR52E4 WILD-TYPE" "OR52E4 WILD-TYPE" 
      TCGA-44-4112       TCGA-44-5643       TCGA-44-5645       TCGA-44-6144 
"OR52E4 WILD-TYPE" "OR52E4 WILD-TYPE" "OR52E4 WILD-TYPE" "OR52E4 WILD-TYPE" 
      TCGA-44-6145       TCGA-44-6146       TCGA-44-6147       TCGA-44-6148 
"OR52E4 WILD-TYPE" "OR52E4 WILD-TYPE" "OR52E4 WILD-TYPE" "OR52E4 WILD-TYPE" 
      TCGA-44-6774       TCGA-44-6775       TCGA-44-6776       TCGA-44-6777 
"OR52E4 WILD-TYPE" "OR52E4 WILD-TYPE" "OR52E4 WILD-TYPE" "OR52E4 WILD-TYPE" 
      TCGA-44-6778       TCGA-44-6779       TCGA-49-4486       TCGA-49-4487 
"OR52E4 WILD-TYPE" "OR52E4 WILD-TYPE" "OR52E4 WILD-TYPE" "OR52E4 WILD-TYPE" 
      TCGA-49-4488       TCGA-49-4490       TCGA-49-4494       TCGA-49-4501 
"OR52E4 WILD-TYPE" "OR52E4 WILD-TYPE" "OR52E4 WILD-TYPE" "OR52E4 WILD-TYPE" 
      TCGA-49-4505       TCGA-49-4506       TCGA-49-4507       TCGA-49-4510 
"OR52E4 WILD-TYPE" "OR52E4 WILD-TYPE" "OR52E4 WILD-TYPE" "OR52E4 WILD-TYPE" 
      TCGA-49-4512       TCGA-49-4514       TCGA-49-6742       TCGA-49-6743 
"OR52E4 WILD-TYPE" "OR52E4 WILD-TYPE" "OR52E4 WILD-TYPE" "OR52E4 WILD-TYPE" 
      TCGA-49-6744       TCGA-49-6745       TCGA-50-5044       TCGA-50-5045 
"OR52E4 WILD-TYPE" "OR52E4 WILD-TYPE" "OR52E4 WILD-TYPE" "OR52E4 WILD-TYPE" 
      TCGA-50-5049       TCGA-50-5051       TCGA-50-5055       TCGA-50-5066 
"OR52E4 WILD-TYPE" "OR52E4 WILD-TYPE" "OR52E4 WILD-TYPE" "OR52E4 WILD-TYPE" 
      TCGA-50-5068       TCGA-50-5072       TCGA-50-5930       TCGA-50-5931 
"OR52E4 WILD-TYPE" "OR52E4 WILD-TYPE" "OR52E4 WILD-TYPE" "OR52E4 WILD-TYPE" 
      TCGA-50-5932       TCGA-50-5933       TCGA-50-5935       TCGA-50-5936 
"OR52E4 WILD-TYPE" "OR52E4 WILD-TYPE" "OR52E4 WILD-TYPE" "OR52E4 WILD-TYPE" 
      TCGA-50-5939       TCGA-50-5941       TCGA-50-5942       TCGA-50-5944 
"OR52E4 WILD-TYPE" "OR52E4 WILD-TYPE" "OR52E4 WILD-TYPE" "OR52E4 WILD-TYPE" 
      TCGA-50-5946       TCGA-50-6590       TCGA-50-6591       TCGA-50-6592 
"OR52E4 WILD-TYPE" "OR52E4 WILD-TYPE" "OR52E4 WILD-TYPE" "OR52E4 WILD-TYPE" 
      TCGA-50-6593       TCGA-50-6594       TCGA-50-6595       TCGA-50-6597 
"OR52E4 WILD-TYPE" "OR52E4 WILD-TYPE" "OR52E4 WILD-TYPE" "OR52E4 WILD-TYPE" 
      TCGA-55-1592       TCGA-55-1594       TCGA-55-1595       TCGA-55-1596 
"OR52E4 WILD-TYPE" "OR52E4 WILD-TYPE" "OR52E4 WILD-TYPE" "OR52E4 WILD-TYPE" 
      TCGA-55-5899       TCGA-55-6543       TCGA-55-6642       TCGA-55-6712 
  "OR52E4 MUTATED" "OR52E4 WILD-TYPE" "OR52E4 WILD-TYPE" "OR52E4 WILD-TYPE" 
      TCGA-64-1676       TCGA-64-1677       TCGA-64-1678       TCGA-64-1680 
"OR52E4 WILD-TYPE" "OR52E4 WILD-TYPE"   "OR52E4 MUTATED" "OR52E4 WILD-TYPE" 
      TCGA-64-5774       TCGA-64-5775       TCGA-64-5778       TCGA-64-5779 
"OR52E4 WILD-TYPE" "OR52E4 WILD-TYPE" "OR52E4 WILD-TYPE" "OR52E4 WILD-TYPE" 
      TCGA-64-5781       TCGA-64-5815       TCGA-67-3770       TCGA-67-3771 
"OR52E4 WILD-TYPE" "OR52E4 WILD-TYPE" "OR52E4 WILD-TYPE" "OR52E4 WILD-TYPE" 
      TCGA-67-3772       TCGA-67-3773       TCGA-67-3774       TCGA-67-6215 
"OR52E4 WILD-TYPE" "OR52E4 WILD-TYPE" "OR52E4 WILD-TYPE" "OR52E4 WILD-TYPE" 
      TCGA-67-6216       TCGA-67-6217       TCGA-71-6725       TCGA-73-4658 
"OR52E4 WILD-TYPE" "OR52E4 WILD-TYPE" "OR52E4 WILD-TYPE" "OR52E4 WILD-TYPE" 
      TCGA-73-4659       TCGA-73-4662       TCGA-73-4666       TCGA-73-4668 
"OR52E4 WILD-TYPE" "OR52E4 WILD-TYPE" "OR52E4 WILD-TYPE" "OR52E4 WILD-TYPE" 
      TCGA-73-4670       TCGA-73-4675       TCGA-73-4676       TCGA-73-4677 
"OR52E4 WILD-TYPE" "OR52E4 WILD-TYPE" "OR52E4 WILD-TYPE" "OR52E4 WILD-TYPE" 
      TCGA-91-6828       TCGA-91-6829       TCGA-91-6831       TCGA-91-6835 
"OR52E4 WILD-TYPE" "OR52E4 WILD-TYPE" "OR52E4 WILD-TYPE" "OR52E4 WILD-TYPE" 
      TCGA-91-6836 
"OR52E4 WILD-TYPE" 
      TCGA-05-4249       TCGA-05-4250       TCGA-05-4382       TCGA-05-4384 
"OR52E4 WILD-TYPE" "OR52E4 WILD-TYPE"   "OR52E4 MUTATED" "OR52E4 WILD-TYPE" 
      TCGA-05-4390       TCGA-05-4396       TCGA-05-4397       TCGA-05-4398 
"OR52E4 WILD-TYPE" "OR52E4 WILD-TYPE"   "OR52E4 MUTATED" "OR52E4 WILD-TYPE" 
      TCGA-05-4402       TCGA-05-4405       TCGA-05-4415       TCGA-05-4417 
"OR52E4 WILD-TYPE" "OR52E4 WILD-TYPE" "OR52E4 WILD-TYPE" "OR52E4 WILD-TYPE" 
      TCGA-05-4418       TCGA-05-4420       TCGA-05-4424       TCGA-05-4426 
"OR52E4 WILD-TYPE" "OR52E4 WILD-TYPE" "OR52E4 WILD-TYPE" "OR52E4 WILD-TYPE" 
      TCGA-05-4427       TCGA-05-4430       TCGA-05-4432       TCGA-05-4433 
"OR52E4 WILD-TYPE" "OR52E4 WILD-TYPE" "OR52E4 WILD-TYPE" "OR52E4 WILD-TYPE" 
      TCGA-05-4434       TCGA-05-5420       TCGA-05-5423       TCGA-05-5425 
"OR52E4 WILD-TYPE" "OR52E4 WILD-TYPE" "OR52E4 WILD-TYPE" "OR52E4 WILD-TYPE" 
      TCGA-05-5429       TCGA-05-5715       TCGA-35-3615       TCGA-35-4122 
"OR52E4 WILD-TYPE" "OR52E4 WILD-TYPE" "OR52E4 WILD-TYPE" "OR52E4 WILD-TYPE" 
      TCGA-35-4123       TCGA-35-5375       TCGA-38-4625       TCGA-38-4626 
"OR52E4 WILD-TYPE" "OR52E4 WILD-TYPE" "OR52E4 WILD-TYPE" "OR52E4 WILD-TYPE" 
      TCGA-38-4627       TCGA-38-4628       TCGA-38-4629       TCGA-38-4630 
"OR52E4 WILD-TYPE" "OR52E4 WILD-TYPE" "OR52E4 WILD-TYPE" "OR52E4 WILD-TYPE" 
      TCGA-38-4631       TCGA-38-4632       TCGA-38-6178       TCGA-44-2655 
"OR52E4 WILD-TYPE" "OR52E4 WILD-TYPE" "OR52E4 WILD-TYPE" "OR52E4 WILD-TYPE" 
      TCGA-44-2656       TCGA-44-2657       TCGA-44-2659       TCGA-44-2661 
"OR52E4 WILD-TYPE" "OR52E4 WILD-TYPE" "OR52E4 WILD-TYPE" "OR52E4 WILD-TYPE" 
      TCGA-44-2662       TCGA-44-2665       TCGA-44-2666       TCGA-44-2668 
"OR52E4 WILD-TYPE" "OR52E4 WILD-TYPE" "OR52E4 WILD-TYPE" "OR52E4 WILD-TYPE" 
      TCGA-44-3396       TCGA-44-3398       TCGA-44-3918       TCGA-44-3919 
"OR52E4 WILD-TYPE" "OR52E4 WILD-TYPE" "OR52E4 WILD-TYPE" "OR52E4 WILD-TYPE" 
      TCGA-44-4112       TCGA-44-5643       TCGA-44-5645       TCGA-44-6144 
"OR52E4 WILD-TYPE" "OR52E4 WILD-TYPE" "OR52E4 WILD-TYPE" "OR52E4 WILD-TYPE" 
      TCGA-44-6145       TCGA-44-6146       TCGA-44-6147       TCGA-44-6148 
"OR52E4 WILD-TYPE" "OR52E4 WILD-TYPE" "OR52E4 WILD-TYPE" "OR52E4 WILD-TYPE" 
      TCGA-44-6774       TCGA-44-6775       TCGA-44-6776       TCGA-44-6777 
"OR52E4 WILD-TYPE" "OR52E4 WILD-TYPE" "OR52E4 WILD-TYPE" "OR52E4 WILD-TYPE" 
      TCGA-44-6778       TCGA-44-6779       TCGA-49-4486       TCGA-49-4487 
"OR52E4 WILD-TYPE" "OR52E4 WILD-TYPE" "OR52E4 WILD-TYPE" "OR52E4 WILD-TYPE" 
      TCGA-49-4488       TCGA-49-4490       TCGA-49-4494       TCGA-49-4501 
"OR52E4 WILD-TYPE" "OR52E4 WILD-TYPE" "OR52E4 WILD-TYPE" "OR52E4 WILD-TYPE" 
      TCGA-49-4505       TCGA-49-4506       TCGA-49-4507       TCGA-49-4510 
"OR52E4 WILD-TYPE" "OR52E4 WILD-TYPE" "OR52E4 WILD-TYPE" "OR52E4 WILD-TYPE" 
      TCGA-49-4512       TCGA-49-4514       TCGA-49-6742       TCGA-49-6743 
"OR52E4 WILD-TYPE" "OR52E4 WILD-TYPE" "OR52E4 WILD-TYPE" "OR52E4 WILD-TYPE" 
      TCGA-49-6744       TCGA-49-6745       TCGA-50-5044       TCGA-50-5045 
"OR52E4 WILD-TYPE" "OR52E4 WILD-TYPE" "OR52E4 WILD-TYPE" "OR52E4 WILD-TYPE" 
      TCGA-50-5049       TCGA-50-5051       TCGA-50-5055       TCGA-50-5066 
"OR52E4 WILD-TYPE" "OR52E4 WILD-TYPE" "OR52E4 WILD-TYPE" "OR52E4 WILD-TYPE" 
      TCGA-50-5068       TCGA-50-5072       TCGA-50-5930       TCGA-50-5931 
"OR52E4 WILD-TYPE" "OR52E4 WILD-TYPE" "OR52E4 WILD-TYPE" "OR52E4 WILD-TYPE" 
      TCGA-50-5932       TCGA-50-5933       TCGA-50-5935       TCGA-50-5936 
"OR52E4 WILD-TYPE" "OR52E4 WILD-TYPE" "OR52E4 WILD-TYPE" "OR52E4 WILD-TYPE" 
      TCGA-50-5939       TCGA-50-5941       TCGA-50-5942       TCGA-50-5944 
"OR52E4 WILD-TYPE" "OR52E4 WILD-TYPE" "OR52E4 WILD-TYPE" "OR52E4 WILD-TYPE" 
      TCGA-50-5946       TCGA-50-6590       TCGA-50-6591       TCGA-50-6592 
"OR52E4 WILD-TYPE" "OR52E4 WILD-TYPE" "OR52E4 WILD-TYPE" "OR52E4 WILD-TYPE" 
      TCGA-50-6593       TCGA-50-6594       TCGA-50-6595       TCGA-50-6597 
"OR52E4 WILD-TYPE" "OR52E4 WILD-TYPE" "OR52E4 WILD-TYPE" "OR52E4 WILD-TYPE" 
      TCGA-55-1592       TCGA-55-1594       TCGA-55-1595       TCGA-55-1596 
"OR52E4 WILD-TYPE" "OR52E4 WILD-TYPE" "OR52E4 WILD-TYPE" "OR52E4 WILD-TYPE" 
      TCGA-55-5899       TCGA-55-6543       TCGA-55-6642       TCGA-55-6712 
  "OR52E4 MUTATED" "OR52E4 WILD-TYPE" "OR52E4 WILD-TYPE" "OR52E4 WILD-TYPE" 
      TCGA-64-1676       TCGA-64-1677       TCGA-64-1678       TCGA-64-1680 
"OR52E4 WILD-TYPE" "OR52E4 WILD-TYPE"   "OR52E4 MUTATED" "OR52E4 WILD-TYPE" 
      TCGA-64-5774       TCGA-64-5775       TCGA-64-5778       TCGA-64-5779 
"OR52E4 WILD-TYPE" "OR52E4 WILD-TYPE" "OR52E4 WILD-TYPE" "OR52E4 WILD-TYPE" 
      TCGA-64-5781       TCGA-64-5815       TCGA-67-3770       TCGA-67-3771 
"OR52E4 WILD-TYPE" "OR52E4 WILD-TYPE" "OR52E4 WILD-TYPE" "OR52E4 WILD-TYPE" 
      TCGA-67-3772       TCGA-67-3773       TCGA-67-3774       TCGA-67-6215 
"OR52E4 WILD-TYPE" "OR52E4 WILD-TYPE" "OR52E4 WILD-TYPE" "OR52E4 WILD-TYPE" 
      TCGA-67-6216       TCGA-67-6217       TCGA-71-6725       TCGA-73-4658 
"OR52E4 WILD-TYPE" "OR52E4 WILD-TYPE" "OR52E4 WILD-TYPE" "OR52E4 WILD-TYPE" 
      TCGA-73-4659       TCGA-73-4662       TCGA-73-4666       TCGA-73-4668 
"OR52E4 WILD-TYPE" "OR52E4 WILD-TYPE" "OR52E4 WILD-TYPE" "OR52E4 WILD-TYPE" 
      TCGA-73-4670       TCGA-73-4675       TCGA-73-4676       TCGA-73-4677 
"OR52E4 WILD-TYPE" "OR52E4 WILD-TYPE" "OR52E4 WILD-TYPE" "OR52E4 WILD-TYPE" 
      TCGA-91-6828       TCGA-91-6829       TCGA-91-6831       TCGA-91-6835 
"OR52E4 WILD-TYPE" "OR52E4 WILD-TYPE" "OR52E4 WILD-TYPE" "OR52E4 WILD-TYPE" 
      TCGA-91-6836 
"OR52E4 WILD-TYPE" 
      TCGA-05-4249       TCGA-05-4250       TCGA-05-4382       TCGA-05-4384 
"OR52E4 WILD-TYPE" "OR52E4 WILD-TYPE"   "OR52E4 MUTATED" "OR52E4 WILD-TYPE" 
      TCGA-05-4390       TCGA-05-4396       TCGA-05-4397       TCGA-05-4398 
"OR52E4 WILD-TYPE" "OR52E4 WILD-TYPE"   "OR52E4 MUTATED" "OR52E4 WILD-TYPE" 
      TCGA-05-4402       TCGA-05-4405       TCGA-05-4415       TCGA-05-4417 
"OR52E4 WILD-TYPE" "OR52E4 WILD-TYPE" "OR52E4 WILD-TYPE" "OR52E4 WILD-TYPE" 
      TCGA-05-4418       TCGA-05-4420       TCGA-05-4424       TCGA-05-4426 
"OR52E4 WILD-TYPE" "OR52E4 WILD-TYPE" "OR52E4 WILD-TYPE" "OR52E4 WILD-TYPE" 
      TCGA-05-4427       TCGA-05-4430       TCGA-05-4432       TCGA-05-4433 
"OR52E4 WILD-TYPE" "OR52E4 WILD-TYPE" "OR52E4 WILD-TYPE" "OR52E4 WILD-TYPE" 
      TCGA-05-4434       TCGA-05-5420       TCGA-05-5423       TCGA-05-5425 
"OR52E4 WILD-TYPE" "OR52E4 WILD-TYPE" "OR52E4 WILD-TYPE" "OR52E4 WILD-TYPE" 
      TCGA-05-5429       TCGA-05-5715       TCGA-35-3615       TCGA-35-4122 
"OR52E4 WILD-TYPE" "OR52E4 WILD-TYPE" "OR52E4 WILD-TYPE" "OR52E4 WILD-TYPE" 
      TCGA-35-4123       TCGA-35-5375       TCGA-38-4625       TCGA-38-4626 
"OR52E4 WILD-TYPE" "OR52E4 WILD-TYPE" "OR52E4 WILD-TYPE" "OR52E4 WILD-TYPE" 
      TCGA-38-4627       TCGA-38-4628       TCGA-38-4629       TCGA-38-4630 
"OR52E4 WILD-TYPE" "OR52E4 WILD-TYPE" "OR52E4 WILD-TYPE" "OR52E4 WILD-TYPE" 
      TCGA-38-4631       TCGA-38-4632       TCGA-38-6178       TCGA-44-2655 
"OR52E4 WILD-TYPE" "OR52E4 WILD-TYPE" "OR52E4 WILD-TYPE" "OR52E4 WILD-TYPE" 
      TCGA-44-2656       TCGA-44-2657       TCGA-44-2659       TCGA-44-2661 
"OR52E4 WILD-TYPE" "OR52E4 WILD-TYPE" "OR52E4 WILD-TYPE" "OR52E4 WILD-TYPE" 
      TCGA-44-2662       TCGA-44-2665       TCGA-44-2666       TCGA-44-2668 
"OR52E4 WILD-TYPE" "OR52E4 WILD-TYPE" "OR52E4 WILD-TYPE" "OR52E4 WILD-TYPE" 
      TCGA-44-3396       TCGA-44-3398       TCGA-44-3918       TCGA-44-3919 
"OR52E4 WILD-TYPE" "OR52E4 WILD-TYPE" "OR52E4 WILD-TYPE" "OR52E4 WILD-TYPE" 
      TCGA-44-4112       TCGA-44-5643       TCGA-44-5645       TCGA-44-6144 
"OR52E4 WILD-TYPE" "OR52E4 WILD-TYPE" "OR52E4 WILD-TYPE" "OR52E4 WILD-TYPE" 
      TCGA-44-6145       TCGA-44-6146       TCGA-44-6147       TCGA-44-6148 
"OR52E4 WILD-TYPE" "OR52E4 WILD-TYPE" "OR52E4 WILD-TYPE" "OR52E4 WILD-TYPE" 
      TCGA-44-6774       TCGA-44-6775       TCGA-44-6776       TCGA-44-6777 
"OR52E4 WILD-TYPE" "OR52E4 WILD-TYPE" "OR52E4 WILD-TYPE" "OR52E4 WILD-TYPE" 
      TCGA-44-6778       TCGA-44-6779       TCGA-49-4486       TCGA-49-4487 
"OR52E4 WILD-TYPE" "OR52E4 WILD-TYPE" "OR52E4 WILD-TYPE" "OR52E4 WILD-TYPE" 
      TCGA-49-4488       TCGA-49-4490       TCGA-49-4494       TCGA-49-4501 
"OR52E4 WILD-TYPE" "OR52E4 WILD-TYPE" "OR52E4 WILD-TYPE" "OR52E4 WILD-TYPE" 
      TCGA-49-4505       TCGA-49-4506       TCGA-49-4507       TCGA-49-4510 
"OR52E4 WILD-TYPE" "OR52E4 WILD-TYPE" "OR52E4 WILD-TYPE" "OR52E4 WILD-TYPE" 
      TCGA-49-4512       TCGA-49-4514       TCGA-49-6742       TCGA-49-6743 
"OR52E4 WILD-TYPE" "OR52E4 WILD-TYPE" "OR52E4 WILD-TYPE" "OR52E4 WILD-TYPE" 
      TCGA-49-6744       TCGA-49-6745       TCGA-50-5044       TCGA-50-5045 
"OR52E4 WILD-TYPE" "OR52E4 WILD-TYPE" "OR52E4 WILD-TYPE" "OR52E4 WILD-TYPE" 
      TCGA-50-5049       TCGA-50-5051       TCGA-50-5055       TCGA-50-5066 
"OR52E4 WILD-TYPE" "OR52E4 WILD-TYPE" "OR52E4 WILD-TYPE" "OR52E4 WILD-TYPE" 
      TCGA-50-5068       TCGA-50-5072       TCGA-50-5930       TCGA-50-5931 
"OR52E4 WILD-TYPE" "OR52E4 WILD-TYPE" "OR52E4 WILD-TYPE" "OR52E4 WILD-TYPE" 
      TCGA-50-5932       TCGA-50-5933       TCGA-50-5935       TCGA-50-5936 
"OR52E4 WILD-TYPE" "OR52E4 WILD-TYPE" "OR52E4 WILD-TYPE" "OR52E4 WILD-TYPE" 
      TCGA-50-5939       TCGA-50-5941       TCGA-50-5942       TCGA-50-5944 
"OR52E4 WILD-TYPE" "OR52E4 WILD-TYPE" "OR52E4 WILD-TYPE" "OR52E4 WILD-TYPE" 
      TCGA-50-5946       TCGA-50-6590       TCGA-50-6591       TCGA-50-6592 
"OR52E4 WILD-TYPE" "OR52E4 WILD-TYPE" "OR52E4 WILD-TYPE" "OR52E4 WILD-TYPE" 
      TCGA-50-6593       TCGA-50-6594       TCGA-50-6595       TCGA-50-6597 
"OR52E4 WILD-TYPE" "OR52E4 WILD-TYPE" "OR52E4 WILD-TYPE" "OR52E4 WILD-TYPE" 
      TCGA-55-1592       TCGA-55-1594       TCGA-55-1595       TCGA-55-1596 
"OR52E4 WILD-TYPE" "OR52E4 WILD-TYPE" "OR52E4 WILD-TYPE" "OR52E4 WILD-TYPE" 
      TCGA-55-5899       TCGA-55-6543       TCGA-55-6642       TCGA-55-6712 
  "OR52E4 MUTATED" "OR52E4 WILD-TYPE" "OR52E4 WILD-TYPE" "OR52E4 WILD-TYPE" 
      TCGA-64-1676       TCGA-64-1677       TCGA-64-1678       TCGA-64-1680 
"OR52E4 WILD-TYPE" "OR52E4 WILD-TYPE"   "OR52E4 MUTATED" "OR52E4 WILD-TYPE" 
      TCGA-64-5774       TCGA-64-5775       TCGA-64-5778       TCGA-64-5779 
"OR52E4 WILD-TYPE" "OR52E4 WILD-TYPE" "OR52E4 WILD-TYPE" "OR52E4 WILD-TYPE" 
      TCGA-64-5781       TCGA-64-5815       TCGA-67-3770       TCGA-67-3771 
"OR52E4 WILD-TYPE" "OR52E4 WILD-TYPE" "OR52E4 WILD-TYPE" "OR52E4 WILD-TYPE" 
      TCGA-67-3772       TCGA-67-3773       TCGA-67-3774       TCGA-67-6215 
"OR52E4 WILD-TYPE" "OR52E4 WILD-TYPE" "OR52E4 WILD-TYPE" "OR52E4 WILD-TYPE" 
      TCGA-67-6216       TCGA-67-6217       TCGA-71-6725       TCGA-73-4658 
"OR52E4 WILD-TYPE" "OR52E4 WILD-TYPE" "OR52E4 WILD-TYPE" "OR52E4 WILD-TYPE" 
      TCGA-73-4659       TCGA-73-4662       TCGA-73-4666       TCGA-73-4668 
"OR52E4 WILD-TYPE" "OR52E4 WILD-TYPE" "OR52E4 WILD-TYPE" "OR52E4 WILD-TYPE" 
      TCGA-73-4670       TCGA-73-4675       TCGA-73-4676       TCGA-73-4677 
"OR52E4 WILD-TYPE" "OR52E4 WILD-TYPE" "OR52E4 WILD-TYPE" "OR52E4 WILD-TYPE" 
      TCGA-91-6828       TCGA-91-6829       TCGA-91-6831       TCGA-91-6835 
"OR52E4 WILD-TYPE" "OR52E4 WILD-TYPE" "OR52E4 WILD-TYPE" "OR52E4 WILD-TYPE" 
      TCGA-91-6836 
"OR52E4 WILD-TYPE" 
[1] "hr=" "1.3"
D60V2, continuous
D60V3, binary
[1] "tbl2"
                  cls
clus               [,1] [,2]
  OR52E4 MUTATED      1    5
  OR52E4 WILD-TYPE   92   74
        clus
vv       OR52E4 MUTATED OR52E4 WILD-TYPE
  FEMALE              1               92
  MALE                5               74
D60V4, continuous
D60V5, multiclass
D60V6, multiclass
    clus
vv   OR52E4 MUTATED OR52E4 WILD-TYPE
  T1              1               40
  T2              4              104
  T3              0               14
  T4              1                7
D60V7, multiclass
       clus
vv      OR52E4 MUTATED OR52E4 WILD-TYPE
  N0                 3               92
  N1                 2               35
  N2+N3              1               34
D60V8, multiclass
    clus
vv   OR52E4 MUTATED OR52E4 WILD-TYPE
  M0              6              131
  M1              0                9
  MX              0               22
D60V9, multiclass
     clus
vv    OR52E4 MUTATED OR52E4 WILD-TYPE
  I                3               85
  II               2               31
  III              1               38
  IV               0                9
D60V10, binary
[1] "tbl2"
                  cls
clus               [,1] [,2]
  OR52E4 MUTATED      0    6
  OR52E4 WILD-TYPE   16  150
     clus
vv    OR52E4 MUTATED OR52E4 WILD-TYPE
  NO               0               16
  YES              6              150
D60V11, continuous
D60V12, continuous
[1] "Remove cluster labels:" "OR52E4 MUTATED"        
clus
  OR52E4 MUTATED OR52E4 WILD-TYPE 
               2               80 
      TCGA-05-4384       TCGA-05-4390       TCGA-05-4396       TCGA-05-4403 
"OR52E4 WILD-TYPE" "OR52E4 WILD-TYPE" "OR52E4 WILD-TYPE" "OR52E4 WILD-TYPE" 
      TCGA-05-4405       TCGA-05-4410       TCGA-05-4415       TCGA-05-4417 
"OR52E4 WILD-TYPE" "OR52E4 WILD-TYPE" "OR52E4 WILD-TYPE" "OR52E4 WILD-TYPE" 
      TCGA-05-4424       TCGA-05-4427       TCGA-05-4433       TCGA-05-5420 
"OR52E4 WILD-TYPE" "OR52E4 WILD-TYPE" "OR52E4 WILD-TYPE" "OR52E4 WILD-TYPE" 
      TCGA-05-5423       TCGA-05-5425       TCGA-05-5428       TCGA-35-4122 
"OR52E4 WILD-TYPE" "OR52E4 WILD-TYPE" "OR52E4 WILD-TYPE" "OR52E4 WILD-TYPE" 
      TCGA-35-4123       TCGA-35-5375       TCGA-38-4629       TCGA-38-4632 
"OR52E4 WILD-TYPE" "OR52E4 WILD-TYPE" "OR52E4 WILD-TYPE" "OR52E4 WILD-TYPE" 
      TCGA-44-2655       TCGA-44-2656       TCGA-44-2657       TCGA-44-2659 
"OR52E4 WILD-TYPE" "OR52E4 WILD-TYPE" "OR52E4 WILD-TYPE" "OR52E4 WILD-TYPE" 
      TCGA-44-2662       TCGA-44-2668       TCGA-44-3398       TCGA-44-3918 
"OR52E4 WILD-TYPE" "OR52E4 WILD-TYPE" "OR52E4 WILD-TYPE" "OR52E4 WILD-TYPE" 
      TCGA-44-4112       TCGA-44-5645       TCGA-44-6145       TCGA-44-6146 
"OR52E4 WILD-TYPE" "OR52E4 WILD-TYPE" "OR52E4 WILD-TYPE" "OR52E4 WILD-TYPE" 
      TCGA-44-6147       TCGA-44-6148       TCGA-44-6775       TCGA-44-6776 
"OR52E4 WILD-TYPE" "OR52E4 WILD-TYPE" "OR52E4 WILD-TYPE" "OR52E4 WILD-TYPE" 
      TCGA-44-6777       TCGA-44-6778       TCGA-44-6779       TCGA-49-4486 
"OR52E4 WILD-TYPE" "OR52E4 WILD-TYPE" "OR52E4 WILD-TYPE" "OR52E4 WILD-TYPE" 
      TCGA-49-4488       TCGA-49-4494       TCGA-49-4505       TCGA-49-4507 
"OR52E4 WILD-TYPE" "OR52E4 WILD-TYPE" "OR52E4 WILD-TYPE" "OR52E4 WILD-TYPE" 
      TCGA-50-5051       TCGA-50-5072       TCGA-50-5939       TCGA-50-5942 
"OR52E4 WILD-TYPE" "OR52E4 WILD-TYPE" "OR52E4 WILD-TYPE" "OR52E4 WILD-TYPE" 
      TCGA-50-5946       TCGA-50-6590       TCGA-50-6594       TCGA-50-6595 
"OR52E4 WILD-TYPE" "OR52E4 WILD-TYPE" "OR52E4 WILD-TYPE" "OR52E4 WILD-TYPE" 
      TCGA-55-1592       TCGA-55-1595       TCGA-55-6543       TCGA-55-6712 
"OR52E4 WILD-TYPE" "OR52E4 WILD-TYPE" "OR52E4 WILD-TYPE" "OR52E4 WILD-TYPE" 
      TCGA-64-1680       TCGA-64-5774       TCGA-64-5778       TCGA-64-5779 
"OR52E4 WILD-TYPE" "OR52E4 WILD-TYPE" "OR52E4 WILD-TYPE" "OR52E4 WILD-TYPE" 
      TCGA-64-5781       TCGA-64-5815       TCGA-67-6217       TCGA-73-4659 
"OR52E4 WILD-TYPE" "OR52E4 WILD-TYPE" "OR52E4 WILD-TYPE" "OR52E4 WILD-TYPE" 
      TCGA-73-4662       TCGA-73-4666       TCGA-73-4668       TCGA-73-4670 
"OR52E4 WILD-TYPE" "OR52E4 WILD-TYPE" "OR52E4 WILD-TYPE" "OR52E4 WILD-TYPE" 
      TCGA-73-4675       TCGA-73-4676       TCGA-73-4677       TCGA-75-5122 
"OR52E4 WILD-TYPE" "OR52E4 WILD-TYPE" "OR52E4 WILD-TYPE" "OR52E4 WILD-TYPE" 
      TCGA-75-5125       TCGA-75-5126       TCGA-75-6206       TCGA-75-6207 
"OR52E4 WILD-TYPE" "OR52E4 WILD-TYPE" "OR52E4 WILD-TYPE" "OR52E4 WILD-TYPE" 
      TCGA-80-5611       TCGA-91-6828       TCGA-91-6829       TCGA-91-6835 
"OR52E4 WILD-TYPE" "OR52E4 WILD-TYPE" "OR52E4 WILD-TYPE" "OR52E4 WILD-TYPE" 
D60V13, multiclass
                                             clus
vv                                            OR52E4 MUTATED OR52E4 WILD-TYPE
  CURRENT REFORMED SMOKER FOR < OR = 15 YEARS              1               61
  CURRENT REFORMED SMOKER FOR > 15 YEARS                   2               44
  CURRENT SMOKER                                           2               26
  LIFELONG NON-SMOKER                                      1               23
D60V14, continuous
[1] "Remove cluster labels:" "OR52E4 MUTATED"        
clus
  OR52E4 MUTATED OR52E4 WILD-TYPE 
               2               66 
      TCGA-05-4384       TCGA-05-4390       TCGA-05-4396       TCGA-05-4405 
"OR52E4 WILD-TYPE" "OR52E4 WILD-TYPE" "OR52E4 WILD-TYPE" "OR52E4 WILD-TYPE" 
      TCGA-05-4410       TCGA-05-4415       TCGA-05-4417       TCGA-05-4424 
"OR52E4 WILD-TYPE" "OR52E4 WILD-TYPE" "OR52E4 WILD-TYPE" "OR52E4 WILD-TYPE" 
      TCGA-05-4427       TCGA-05-4433       TCGA-05-5420       TCGA-05-5423 
"OR52E4 WILD-TYPE" "OR52E4 WILD-TYPE" "OR52E4 WILD-TYPE" "OR52E4 WILD-TYPE" 
      TCGA-05-5425       TCGA-05-5428       TCGA-35-4122       TCGA-35-4123 
"OR52E4 WILD-TYPE" "OR52E4 WILD-TYPE" "OR52E4 WILD-TYPE" "OR52E4 WILD-TYPE" 
      TCGA-35-5375       TCGA-38-4625       TCGA-38-4626       TCGA-44-2655 
"OR52E4 WILD-TYPE" "OR52E4 WILD-TYPE" "OR52E4 WILD-TYPE" "OR52E4 WILD-TYPE" 
      TCGA-44-2656       TCGA-44-2657       TCGA-44-2659       TCGA-44-2662 
"OR52E4 WILD-TYPE" "OR52E4 WILD-TYPE" "OR52E4 WILD-TYPE" "OR52E4 WILD-TYPE" 
      TCGA-44-2666       TCGA-44-2668       TCGA-44-3396       TCGA-44-3398 
"OR52E4 WILD-TYPE" "OR52E4 WILD-TYPE" "OR52E4 WILD-TYPE" "OR52E4 WILD-TYPE" 
      TCGA-44-3918       TCGA-44-4112       TCGA-44-5645       TCGA-44-6144 
"OR52E4 WILD-TYPE" "OR52E4 WILD-TYPE" "OR52E4 WILD-TYPE" "OR52E4 WILD-TYPE" 
      TCGA-44-6145       TCGA-44-6147       TCGA-44-6148       TCGA-44-6774 
"OR52E4 WILD-TYPE" "OR52E4 WILD-TYPE" "OR52E4 WILD-TYPE" "OR52E4 WILD-TYPE" 
      TCGA-44-6775       TCGA-44-6776       TCGA-44-6777       TCGA-44-6778 
"OR52E4 WILD-TYPE" "OR52E4 WILD-TYPE" "OR52E4 WILD-TYPE" "OR52E4 WILD-TYPE" 
      TCGA-44-6779       TCGA-49-4486       TCGA-49-4494       TCGA-49-4505 
"OR52E4 WILD-TYPE" "OR52E4 WILD-TYPE" "OR52E4 WILD-TYPE" "OR52E4 WILD-TYPE" 
      TCGA-55-1592       TCGA-55-1594       TCGA-55-1595       TCGA-55-1596 
"OR52E4 WILD-TYPE" "OR52E4 WILD-TYPE" "OR52E4 WILD-TYPE" "OR52E4 WILD-TYPE" 
      TCGA-55-6642       TCGA-55-6712       TCGA-64-1677       TCGA-64-1680 
"OR52E4 WILD-TYPE" "OR52E4 WILD-TYPE" "OR52E4 WILD-TYPE" "OR52E4 WILD-TYPE" 
      TCGA-64-5774       TCGA-64-5775       TCGA-64-5778       TCGA-64-5779 
"OR52E4 WILD-TYPE" "OR52E4 WILD-TYPE" "OR52E4 WILD-TYPE" "OR52E4 WILD-TYPE" 
      TCGA-64-5781       TCGA-73-4659       TCGA-73-4662       TCGA-73-4666 
"OR52E4 WILD-TYPE" "OR52E4 WILD-TYPE" "OR52E4 WILD-TYPE" "OR52E4 WILD-TYPE" 
      TCGA-73-4668       TCGA-73-4670       TCGA-73-4675       TCGA-73-4676 
"OR52E4 WILD-TYPE" "OR52E4 WILD-TYPE" "OR52E4 WILD-TYPE" "OR52E4 WILD-TYPE" 
      TCGA-91-6829       TCGA-91-6836 
"OR52E4 WILD-TYPE" "OR52E4 WILD-TYPE" 

Clustering(61) Variable = OR14I1 MUTATION ANALYSIS
D61V1, survival
                  sevent
clus2               0  1
  OR14I1 MUTATED    5  1
  OR14I1 WILD-TYPE 94 49
  OR14I1 MUTATED OR14I1 WILD-TYPE 
               6              143 
  OR14I1 MUTATED OR14I1 WILD-TYPE 
               1               49 
$`OR14I1 MUTATED`
TCGA-05-4382 TCGA-44-6778 TCGA-55-1595 TCGA-64-1676 TCGA-67-3770 TCGA-73-4659 
       19.92        36.49        48.62        56.81         0.99        23.38 

$`OR14I1 WILD-TYPE`
TCGA-05-4249 TCGA-05-4250 TCGA-05-4384 TCGA-05-4390 TCGA-05-4396 TCGA-05-4397 
       38.07         3.98        14.01        37.02         9.96        24.03 
TCGA-05-4398 TCGA-05-4402 TCGA-05-4405 TCGA-05-4415 TCGA-05-4417 TCGA-05-4418 
       47.05         8.02        20.05         2.96        14.93         8.98 
TCGA-05-4420 TCGA-05-4424 TCGA-05-4426 TCGA-05-4427 TCGA-05-4430 TCGA-05-4432 
       29.95        30.02        26.01        26.01        25.02        25.02 
TCGA-05-4433 TCGA-05-4434 TCGA-05-5420 TCGA-05-5423 TCGA-05-5425 TCGA-05-5429 
       24.00        15.02         1.02         4.96         2.96         0.99 
TCGA-05-5715 TCGA-35-3615 TCGA-35-4122 TCGA-35-4123 TCGA-35-5375 TCGA-38-4625 
        2.04         0.46         7.36         5.95         8.68        47.61 
TCGA-38-4626 TCGA-38-4627 TCGA-38-4628 TCGA-38-4629 TCGA-38-4630 TCGA-38-4631 
       85.32        37.71        49.02        28.37        35.28        11.64 
TCGA-38-4632 TCGA-38-6178 TCGA-44-2655 TCGA-44-2656 TCGA-44-2657 TCGA-44-2659 
       44.61         5.19        18.87        19.10        13.15        17.39 
TCGA-44-2661 TCGA-44-2662 TCGA-44-2665 TCGA-44-2666 TCGA-44-2668 TCGA-44-3396 
        3.39        15.78        13.15         3.19         8.09        10.22 
TCGA-44-3398 TCGA-44-3918 TCGA-44-3919 TCGA-44-4112 TCGA-44-5643 TCGA-44-5645 
        8.32         6.44         6.21         4.60         3.48         6.84 
TCGA-44-6144 TCGA-44-6145 TCGA-44-6146 TCGA-44-6147 TCGA-44-6148 TCGA-44-6774 
        0.30         3.35         9.93         7.76         3.12         5.42 
TCGA-44-6775 TCGA-44-6776 TCGA-44-6777 TCGA-44-6779 TCGA-49-4486 TCGA-49-4487 
        2.70        63.72        32.45        16.41        76.21        28.11 
TCGA-49-4488 TCGA-49-4490 TCGA-49-4494 TCGA-49-4501 TCGA-49-4505 TCGA-49-4506 
       28.57        12.66        35.54        46.72        14.07        32.84 
TCGA-49-4507 TCGA-49-4510 TCGA-49-4512 TCGA-49-4514 TCGA-49-6742 TCGA-49-6743 
        8.81        29.46        29.75        43.20        15.02        12.13 
TCGA-49-6744 TCGA-49-6745 TCGA-50-5044 TCGA-50-5045 TCGA-50-5049 TCGA-50-5051 
       12.99         4.93        20.48        71.47        48.82        14.96 
TCGA-50-5055 TCGA-50-5066 TCGA-50-5068 TCGA-50-5072 TCGA-50-5930 TCGA-50-5931 
       25.81         9.76        49.28         8.05         9.27         8.78 
TCGA-50-5932 TCGA-50-5933 TCGA-50-5935 TCGA-50-5936 TCGA-50-5939 TCGA-50-5941 
       35.87        77.88        21.47         8.45        15.12         9.37 
TCGA-50-5942 TCGA-50-5944 TCGA-50-5946 TCGA-50-6590 TCGA-50-6591 TCGA-50-6592 
        4.44        12.26        11.47        42.31         3.88        25.51 
TCGA-50-6593 TCGA-50-6594 TCGA-50-6595 TCGA-50-6597 TCGA-55-1592 TCGA-55-1594 
       11.05        12.16         6.21        33.37        23.05        38.73 
TCGA-55-1596 TCGA-55-5899 TCGA-55-6543 TCGA-55-6642 TCGA-55-6712 TCGA-64-1677 
       45.17         2.86         0.07        32.61         0.79        20.65 
TCGA-64-1678 TCGA-64-1680 TCGA-64-5774 TCGA-64-5775 TCGA-64-5778 TCGA-64-5779 
       39.09        37.02        83.84         0.10        30.44        16.67 
TCGA-64-5781 TCGA-64-5815 TCGA-67-3771 TCGA-67-3772 TCGA-67-3773 TCGA-67-3774 
       39.52         7.33         1.97         0.59         2.04         0.59 
TCGA-67-6215 TCGA-67-6216 TCGA-67-6217 TCGA-71-6725 TCGA-73-4658 TCGA-73-4662 
        0.89         0.69        13.87         2.01        52.57        29.95 
TCGA-73-4666 TCGA-73-4668 TCGA-73-4670 TCGA-73-4675 TCGA-73-4676 TCGA-73-4677 
       20.28        15.35         0.46         1.32         4.01         1.25 
TCGA-91-6828 TCGA-91-6829 TCGA-91-6831 TCGA-91-6835 TCGA-91-6836 
        1.22        41.33         1.28         1.15         0.36 

  OR14I1 MUTATED OR14I1 WILD-TYPE 
            0.99             0.07 
  OR14I1 MUTATED OR14I1 WILD-TYPE 
           56.81            85.32 
  OR14I1 MUTATED OR14I1 WILD-TYPE 
          29.935           13.150 
[1] "1.0 - 56.8 (29.9)" "0.1 - 85.3 (13.2)"
      TCGA-05-4249       TCGA-05-4250       TCGA-05-4382       TCGA-05-4384 
"OR14I1 WILD-TYPE" "OR14I1 WILD-TYPE"   "OR14I1 MUTATED" "OR14I1 WILD-TYPE" 
      TCGA-05-4390       TCGA-05-4396       TCGA-05-4397       TCGA-05-4398 
"OR14I1 WILD-TYPE" "OR14I1 WILD-TYPE" "OR14I1 WILD-TYPE" "OR14I1 WILD-TYPE" 
      TCGA-05-4402       TCGA-05-4405       TCGA-05-4415       TCGA-05-4417 
"OR14I1 WILD-TYPE" "OR14I1 WILD-TYPE" "OR14I1 WILD-TYPE" "OR14I1 WILD-TYPE" 
      TCGA-05-4418       TCGA-05-4420       TCGA-05-4424       TCGA-05-4426 
"OR14I1 WILD-TYPE" "OR14I1 WILD-TYPE" "OR14I1 WILD-TYPE" "OR14I1 WILD-TYPE" 
      TCGA-05-4427       TCGA-05-4430       TCGA-05-4432       TCGA-05-4433 
"OR14I1 WILD-TYPE" "OR14I1 WILD-TYPE" "OR14I1 WILD-TYPE" "OR14I1 WILD-TYPE" 
      TCGA-05-4434       TCGA-05-5420       TCGA-05-5423       TCGA-05-5425 
"OR14I1 WILD-TYPE" "OR14I1 WILD-TYPE" "OR14I1 WILD-TYPE" "OR14I1 WILD-TYPE" 
      TCGA-05-5429       TCGA-05-5715       TCGA-35-3615       TCGA-35-4122 
"OR14I1 WILD-TYPE" "OR14I1 WILD-TYPE" "OR14I1 WILD-TYPE" "OR14I1 WILD-TYPE" 
      TCGA-35-4123       TCGA-35-5375       TCGA-38-4625       TCGA-38-4626 
"OR14I1 WILD-TYPE" "OR14I1 WILD-TYPE" "OR14I1 WILD-TYPE" "OR14I1 WILD-TYPE" 
      TCGA-38-4627       TCGA-38-4628       TCGA-38-4629       TCGA-38-4630 
"OR14I1 WILD-TYPE" "OR14I1 WILD-TYPE" "OR14I1 WILD-TYPE" "OR14I1 WILD-TYPE" 
      TCGA-38-4631       TCGA-38-4632       TCGA-38-6178       TCGA-44-2655 
"OR14I1 WILD-TYPE" "OR14I1 WILD-TYPE" "OR14I1 WILD-TYPE" "OR14I1 WILD-TYPE" 
      TCGA-44-2656       TCGA-44-2657       TCGA-44-2659       TCGA-44-2661 
"OR14I1 WILD-TYPE" "OR14I1 WILD-TYPE" "OR14I1 WILD-TYPE" "OR14I1 WILD-TYPE" 
      TCGA-44-2662       TCGA-44-2665       TCGA-44-2666       TCGA-44-2668 
"OR14I1 WILD-TYPE" "OR14I1 WILD-TYPE" "OR14I1 WILD-TYPE" "OR14I1 WILD-TYPE" 
      TCGA-44-3396       TCGA-44-3398       TCGA-44-3918       TCGA-44-3919 
"OR14I1 WILD-TYPE" "OR14I1 WILD-TYPE" "OR14I1 WILD-TYPE" "OR14I1 WILD-TYPE" 
      TCGA-44-4112       TCGA-44-5643       TCGA-44-5645       TCGA-44-6144 
"OR14I1 WILD-TYPE" "OR14I1 WILD-TYPE" "OR14I1 WILD-TYPE" "OR14I1 WILD-TYPE" 
      TCGA-44-6145       TCGA-44-6146       TCGA-44-6147       TCGA-44-6148 
"OR14I1 WILD-TYPE" "OR14I1 WILD-TYPE" "OR14I1 WILD-TYPE" "OR14I1 WILD-TYPE" 
      TCGA-44-6774       TCGA-44-6775       TCGA-44-6776       TCGA-44-6777 
"OR14I1 WILD-TYPE" "OR14I1 WILD-TYPE" "OR14I1 WILD-TYPE" "OR14I1 WILD-TYPE" 
      TCGA-44-6778       TCGA-44-6779       TCGA-49-4486       TCGA-49-4487 
  "OR14I1 MUTATED" "OR14I1 WILD-TYPE" "OR14I1 WILD-TYPE" "OR14I1 WILD-TYPE" 
      TCGA-49-4488       TCGA-49-4490       TCGA-49-4494       TCGA-49-4501 
"OR14I1 WILD-TYPE" "OR14I1 WILD-TYPE" "OR14I1 WILD-TYPE" "OR14I1 WILD-TYPE" 
      TCGA-49-4505       TCGA-49-4506       TCGA-49-4507       TCGA-49-4510 
"OR14I1 WILD-TYPE" "OR14I1 WILD-TYPE" "OR14I1 WILD-TYPE" "OR14I1 WILD-TYPE" 
      TCGA-49-4512       TCGA-49-4514       TCGA-49-6742       TCGA-49-6743 
"OR14I1 WILD-TYPE" "OR14I1 WILD-TYPE" "OR14I1 WILD-TYPE" "OR14I1 WILD-TYPE" 
      TCGA-49-6744       TCGA-49-6745       TCGA-50-5044       TCGA-50-5045 
"OR14I1 WILD-TYPE" "OR14I1 WILD-TYPE" "OR14I1 WILD-TYPE" "OR14I1 WILD-TYPE" 
      TCGA-50-5049       TCGA-50-5051       TCGA-50-5055       TCGA-50-5066 
"OR14I1 WILD-TYPE" "OR14I1 WILD-TYPE" "OR14I1 WILD-TYPE" "OR14I1 WILD-TYPE" 
      TCGA-50-5068       TCGA-50-5072       TCGA-50-5930       TCGA-50-5931 
"OR14I1 WILD-TYPE" "OR14I1 WILD-TYPE" "OR14I1 WILD-TYPE" "OR14I1 WILD-TYPE" 
      TCGA-50-5932       TCGA-50-5933       TCGA-50-5935       TCGA-50-5936 
"OR14I1 WILD-TYPE" "OR14I1 WILD-TYPE" "OR14I1 WILD-TYPE" "OR14I1 WILD-TYPE" 
      TCGA-50-5939       TCGA-50-5941       TCGA-50-5942       TCGA-50-5944 
"OR14I1 WILD-TYPE" "OR14I1 WILD-TYPE" "OR14I1 WILD-TYPE" "OR14I1 WILD-TYPE" 
      TCGA-50-5946       TCGA-50-6590       TCGA-50-6591       TCGA-50-6592 
"OR14I1 WILD-TYPE" "OR14I1 WILD-TYPE" "OR14I1 WILD-TYPE" "OR14I1 WILD-TYPE" 
      TCGA-50-6593       TCGA-50-6594       TCGA-50-6595       TCGA-50-6597 
"OR14I1 WILD-TYPE" "OR14I1 WILD-TYPE" "OR14I1 WILD-TYPE" "OR14I1 WILD-TYPE" 
      TCGA-55-1592       TCGA-55-1594       TCGA-55-1595       TCGA-55-1596 
"OR14I1 WILD-TYPE" "OR14I1 WILD-TYPE"   "OR14I1 MUTATED" "OR14I1 WILD-TYPE" 
      TCGA-55-5899       TCGA-55-6543       TCGA-55-6642       TCGA-55-6712 
"OR14I1 WILD-TYPE" "OR14I1 WILD-TYPE" "OR14I1 WILD-TYPE" "OR14I1 WILD-TYPE" 
      TCGA-64-1676       TCGA-64-1677       TCGA-64-1678       TCGA-64-1680 
  "OR14I1 MUTATED" "OR14I1 WILD-TYPE" "OR14I1 WILD-TYPE" "OR14I1 WILD-TYPE" 
      TCGA-64-5774       TCGA-64-5775       TCGA-64-5778       TCGA-64-5779 
"OR14I1 WILD-TYPE" "OR14I1 WILD-TYPE" "OR14I1 WILD-TYPE" "OR14I1 WILD-TYPE" 
      TCGA-64-5781       TCGA-64-5815       TCGA-67-3770       TCGA-67-3771 
"OR14I1 WILD-TYPE" "OR14I1 WILD-TYPE"   "OR14I1 MUTATED" "OR14I1 WILD-TYPE" 
      TCGA-67-3772       TCGA-67-3773       TCGA-67-3774       TCGA-67-6215 
"OR14I1 WILD-TYPE" "OR14I1 WILD-TYPE" "OR14I1 WILD-TYPE" "OR14I1 WILD-TYPE" 
      TCGA-67-6216       TCGA-67-6217       TCGA-71-6725       TCGA-73-4658 
"OR14I1 WILD-TYPE" "OR14I1 WILD-TYPE" "OR14I1 WILD-TYPE" "OR14I1 WILD-TYPE" 
      TCGA-73-4659       TCGA-73-4662       TCGA-73-4666       TCGA-73-4668 
  "OR14I1 MUTATED" "OR14I1 WILD-TYPE" "OR14I1 WILD-TYPE" "OR14I1 WILD-TYPE" 
      TCGA-73-4670       TCGA-73-4675       TCGA-73-4676       TCGA-73-4677 
"OR14I1 WILD-TYPE" "OR14I1 WILD-TYPE" "OR14I1 WILD-TYPE" "OR14I1 WILD-TYPE" 
      TCGA-91-6828       TCGA-91-6829       TCGA-91-6831       TCGA-91-6835 
"OR14I1 WILD-TYPE" "OR14I1 WILD-TYPE" "OR14I1 WILD-TYPE" "OR14I1 WILD-TYPE" 
      TCGA-91-6836 
"OR14I1 WILD-TYPE" 
      TCGA-05-4249       TCGA-05-4250       TCGA-05-4382       TCGA-05-4384 
"OR14I1 WILD-TYPE" "OR14I1 WILD-TYPE"   "OR14I1 MUTATED" "OR14I1 WILD-TYPE" 
      TCGA-05-4390       TCGA-05-4396       TCGA-05-4397       TCGA-05-4398 
"OR14I1 WILD-TYPE" "OR14I1 WILD-TYPE" "OR14I1 WILD-TYPE" "OR14I1 WILD-TYPE" 
      TCGA-05-4402       TCGA-05-4405       TCGA-05-4415       TCGA-05-4417 
"OR14I1 WILD-TYPE" "OR14I1 WILD-TYPE" "OR14I1 WILD-TYPE" "OR14I1 WILD-TYPE" 
      TCGA-05-4418       TCGA-05-4420       TCGA-05-4424       TCGA-05-4426 
"OR14I1 WILD-TYPE" "OR14I1 WILD-TYPE" "OR14I1 WILD-TYPE" "OR14I1 WILD-TYPE" 
      TCGA-05-4427       TCGA-05-4430       TCGA-05-4432       TCGA-05-4433 
"OR14I1 WILD-TYPE" "OR14I1 WILD-TYPE" "OR14I1 WILD-TYPE" "OR14I1 WILD-TYPE" 
      TCGA-05-4434       TCGA-05-5420       TCGA-05-5423       TCGA-05-5425 
"OR14I1 WILD-TYPE" "OR14I1 WILD-TYPE" "OR14I1 WILD-TYPE" "OR14I1 WILD-TYPE" 
      TCGA-05-5429       TCGA-05-5715       TCGA-35-3615       TCGA-35-4122 
"OR14I1 WILD-TYPE" "OR14I1 WILD-TYPE" "OR14I1 WILD-TYPE" "OR14I1 WILD-TYPE" 
      TCGA-35-4123       TCGA-35-5375       TCGA-38-4625       TCGA-38-4626 
"OR14I1 WILD-TYPE" "OR14I1 WILD-TYPE" "OR14I1 WILD-TYPE" "OR14I1 WILD-TYPE" 
      TCGA-38-4627       TCGA-38-4628       TCGA-38-4629       TCGA-38-4630 
"OR14I1 WILD-TYPE" "OR14I1 WILD-TYPE" "OR14I1 WILD-TYPE" "OR14I1 WILD-TYPE" 
      TCGA-38-4631       TCGA-38-4632       TCGA-38-6178       TCGA-44-2655 
"OR14I1 WILD-TYPE" "OR14I1 WILD-TYPE" "OR14I1 WILD-TYPE" "OR14I1 WILD-TYPE" 
      TCGA-44-2656       TCGA-44-2657       TCGA-44-2659       TCGA-44-2661 
"OR14I1 WILD-TYPE" "OR14I1 WILD-TYPE" "OR14I1 WILD-TYPE" "OR14I1 WILD-TYPE" 
      TCGA-44-2662       TCGA-44-2665       TCGA-44-2666       TCGA-44-2668 
"OR14I1 WILD-TYPE" "OR14I1 WILD-TYPE" "OR14I1 WILD-TYPE" "OR14I1 WILD-TYPE" 
      TCGA-44-3396       TCGA-44-3398       TCGA-44-3918       TCGA-44-3919 
"OR14I1 WILD-TYPE" "OR14I1 WILD-TYPE" "OR14I1 WILD-TYPE" "OR14I1 WILD-TYPE" 
      TCGA-44-4112       TCGA-44-5643       TCGA-44-5645       TCGA-44-6144 
"OR14I1 WILD-TYPE" "OR14I1 WILD-TYPE" "OR14I1 WILD-TYPE" "OR14I1 WILD-TYPE" 
      TCGA-44-6145       TCGA-44-6146       TCGA-44-6147       TCGA-44-6148 
"OR14I1 WILD-TYPE" "OR14I1 WILD-TYPE" "OR14I1 WILD-TYPE" "OR14I1 WILD-TYPE" 
      TCGA-44-6774       TCGA-44-6775       TCGA-44-6776       TCGA-44-6777 
"OR14I1 WILD-TYPE" "OR14I1 WILD-TYPE" "OR14I1 WILD-TYPE" "OR14I1 WILD-TYPE" 
      TCGA-44-6778       TCGA-44-6779       TCGA-49-4486       TCGA-49-4487 
  "OR14I1 MUTATED" "OR14I1 WILD-TYPE" "OR14I1 WILD-TYPE" "OR14I1 WILD-TYPE" 
      TCGA-49-4488       TCGA-49-4490       TCGA-49-4494       TCGA-49-4501 
"OR14I1 WILD-TYPE" "OR14I1 WILD-TYPE" "OR14I1 WILD-TYPE" "OR14I1 WILD-TYPE" 
      TCGA-49-4505       TCGA-49-4506       TCGA-49-4507       TCGA-49-4510 
"OR14I1 WILD-TYPE" "OR14I1 WILD-TYPE" "OR14I1 WILD-TYPE" "OR14I1 WILD-TYPE" 
      TCGA-49-4512       TCGA-49-4514       TCGA-49-6742       TCGA-49-6743 
"OR14I1 WILD-TYPE" "OR14I1 WILD-TYPE" "OR14I1 WILD-TYPE" "OR14I1 WILD-TYPE" 
      TCGA-49-6744       TCGA-49-6745       TCGA-50-5044       TCGA-50-5045 
"OR14I1 WILD-TYPE" "OR14I1 WILD-TYPE" "OR14I1 WILD-TYPE" "OR14I1 WILD-TYPE" 
      TCGA-50-5049       TCGA-50-5051       TCGA-50-5055       TCGA-50-5066 
"OR14I1 WILD-TYPE" "OR14I1 WILD-TYPE" "OR14I1 WILD-TYPE" "OR14I1 WILD-TYPE" 
      TCGA-50-5068       TCGA-50-5072       TCGA-50-5930       TCGA-50-5931 
"OR14I1 WILD-TYPE" "OR14I1 WILD-TYPE" "OR14I1 WILD-TYPE" "OR14I1 WILD-TYPE" 
      TCGA-50-5932       TCGA-50-5933       TCGA-50-5935       TCGA-50-5936 
"OR14I1 WILD-TYPE" "OR14I1 WILD-TYPE" "OR14I1 WILD-TYPE" "OR14I1 WILD-TYPE" 
      TCGA-50-5939       TCGA-50-5941       TCGA-50-5942       TCGA-50-5944 
"OR14I1 WILD-TYPE" "OR14I1 WILD-TYPE" "OR14I1 WILD-TYPE" "OR14I1 WILD-TYPE" 
      TCGA-50-5946       TCGA-50-6590       TCGA-50-6591       TCGA-50-6592 
"OR14I1 WILD-TYPE" "OR14I1 WILD-TYPE" "OR14I1 WILD-TYPE" "OR14I1 WILD-TYPE" 
      TCGA-50-6593       TCGA-50-6594       TCGA-50-6595       TCGA-50-6597 
"OR14I1 WILD-TYPE" "OR14I1 WILD-TYPE" "OR14I1 WILD-TYPE" "OR14I1 WILD-TYPE" 
      TCGA-55-1592       TCGA-55-1594       TCGA-55-1595       TCGA-55-1596 
"OR14I1 WILD-TYPE" "OR14I1 WILD-TYPE"   "OR14I1 MUTATED" "OR14I1 WILD-TYPE" 
      TCGA-55-5899       TCGA-55-6543       TCGA-55-6642       TCGA-55-6712 
"OR14I1 WILD-TYPE" "OR14I1 WILD-TYPE" "OR14I1 WILD-TYPE" "OR14I1 WILD-TYPE" 
      TCGA-64-1676       TCGA-64-1677       TCGA-64-1678       TCGA-64-1680 
  "OR14I1 MUTATED" "OR14I1 WILD-TYPE" "OR14I1 WILD-TYPE" "OR14I1 WILD-TYPE" 
      TCGA-64-5774       TCGA-64-5775       TCGA-64-5778       TCGA-64-5779 
"OR14I1 WILD-TYPE" "OR14I1 WILD-TYPE" "OR14I1 WILD-TYPE" "OR14I1 WILD-TYPE" 
      TCGA-64-5781       TCGA-64-5815       TCGA-67-3770       TCGA-67-3771 
"OR14I1 WILD-TYPE" "OR14I1 WILD-TYPE"   "OR14I1 MUTATED" "OR14I1 WILD-TYPE" 
      TCGA-67-3772       TCGA-67-3773       TCGA-67-3774       TCGA-67-6215 
"OR14I1 WILD-TYPE" "OR14I1 WILD-TYPE" "OR14I1 WILD-TYPE" "OR14I1 WILD-TYPE" 
      TCGA-67-6216       TCGA-67-6217       TCGA-71-6725       TCGA-73-4658 
"OR14I1 WILD-TYPE" "OR14I1 WILD-TYPE" "OR14I1 WILD-TYPE" "OR14I1 WILD-TYPE" 
      TCGA-73-4659       TCGA-73-4662       TCGA-73-4666       TCGA-73-4668 
  "OR14I1 MUTATED" "OR14I1 WILD-TYPE" "OR14I1 WILD-TYPE" "OR14I1 WILD-TYPE" 
      TCGA-73-4670       TCGA-73-4675       TCGA-73-4676       TCGA-73-4677 
"OR14I1 WILD-TYPE" "OR14I1 WILD-TYPE" "OR14I1 WILD-TYPE" "OR14I1 WILD-TYPE" 
      TCGA-91-6828       TCGA-91-6829       TCGA-91-6831       TCGA-91-6835 
"OR14I1 WILD-TYPE" "OR14I1 WILD-TYPE" "OR14I1 WILD-TYPE" "OR14I1 WILD-TYPE" 
      TCGA-91-6836 
"OR14I1 WILD-TYPE" 
      TCGA-05-4249       TCGA-05-4250       TCGA-05-4382       TCGA-05-4384 
"OR14I1 WILD-TYPE" "OR14I1 WILD-TYPE"   "OR14I1 MUTATED" "OR14I1 WILD-TYPE" 
      TCGA-05-4390       TCGA-05-4396       TCGA-05-4397       TCGA-05-4398 
"OR14I1 WILD-TYPE" "OR14I1 WILD-TYPE" "OR14I1 WILD-TYPE" "OR14I1 WILD-TYPE" 
      TCGA-05-4402       TCGA-05-4405       TCGA-05-4415       TCGA-05-4417 
"OR14I1 WILD-TYPE" "OR14I1 WILD-TYPE" "OR14I1 WILD-TYPE" "OR14I1 WILD-TYPE" 
      TCGA-05-4418       TCGA-05-4420       TCGA-05-4424       TCGA-05-4426 
"OR14I1 WILD-TYPE" "OR14I1 WILD-TYPE" "OR14I1 WILD-TYPE" "OR14I1 WILD-TYPE" 
      TCGA-05-4427       TCGA-05-4430       TCGA-05-4432       TCGA-05-4433 
"OR14I1 WILD-TYPE" "OR14I1 WILD-TYPE" "OR14I1 WILD-TYPE" "OR14I1 WILD-TYPE" 
      TCGA-05-4434       TCGA-05-5420       TCGA-05-5423       TCGA-05-5425 
"OR14I1 WILD-TYPE" "OR14I1 WILD-TYPE" "OR14I1 WILD-TYPE" "OR14I1 WILD-TYPE" 
      TCGA-05-5429       TCGA-05-5715       TCGA-35-3615       TCGA-35-4122 
"OR14I1 WILD-TYPE" "OR14I1 WILD-TYPE" "OR14I1 WILD-TYPE" "OR14I1 WILD-TYPE" 
      TCGA-35-4123       TCGA-35-5375       TCGA-38-4625       TCGA-38-4626 
"OR14I1 WILD-TYPE" "OR14I1 WILD-TYPE" "OR14I1 WILD-TYPE" "OR14I1 WILD-TYPE" 
      TCGA-38-4627       TCGA-38-4628       TCGA-38-4629       TCGA-38-4630 
"OR14I1 WILD-TYPE" "OR14I1 WILD-TYPE" "OR14I1 WILD-TYPE" "OR14I1 WILD-TYPE" 
      TCGA-38-4631       TCGA-38-4632       TCGA-38-6178       TCGA-44-2655 
"OR14I1 WILD-TYPE" "OR14I1 WILD-TYPE" "OR14I1 WILD-TYPE" "OR14I1 WILD-TYPE" 
      TCGA-44-2656       TCGA-44-2657       TCGA-44-2659       TCGA-44-2661 
"OR14I1 WILD-TYPE" "OR14I1 WILD-TYPE" "OR14I1 WILD-TYPE" "OR14I1 WILD-TYPE" 
      TCGA-44-2662       TCGA-44-2665       TCGA-44-2666       TCGA-44-2668 
"OR14I1 WILD-TYPE" "OR14I1 WILD-TYPE" "OR14I1 WILD-TYPE" "OR14I1 WILD-TYPE" 
      TCGA-44-3396       TCGA-44-3398       TCGA-44-3918       TCGA-44-3919 
"OR14I1 WILD-TYPE" "OR14I1 WILD-TYPE" "OR14I1 WILD-TYPE" "OR14I1 WILD-TYPE" 
      TCGA-44-4112       TCGA-44-5643       TCGA-44-5645       TCGA-44-6144 
"OR14I1 WILD-TYPE" "OR14I1 WILD-TYPE" "OR14I1 WILD-TYPE" "OR14I1 WILD-TYPE" 
      TCGA-44-6145       TCGA-44-6146       TCGA-44-6147       TCGA-44-6148 
"OR14I1 WILD-TYPE" "OR14I1 WILD-TYPE" "OR14I1 WILD-TYPE" "OR14I1 WILD-TYPE" 
      TCGA-44-6774       TCGA-44-6775       TCGA-44-6776       TCGA-44-6777 
"OR14I1 WILD-TYPE" "OR14I1 WILD-TYPE" "OR14I1 WILD-TYPE" "OR14I1 WILD-TYPE" 
      TCGA-44-6778       TCGA-44-6779       TCGA-49-4486       TCGA-49-4487 
  "OR14I1 MUTATED" "OR14I1 WILD-TYPE" "OR14I1 WILD-TYPE" "OR14I1 WILD-TYPE" 
      TCGA-49-4488       TCGA-49-4490       TCGA-49-4494       TCGA-49-4501 
"OR14I1 WILD-TYPE" "OR14I1 WILD-TYPE" "OR14I1 WILD-TYPE" "OR14I1 WILD-TYPE" 
      TCGA-49-4505       TCGA-49-4506       TCGA-49-4507       TCGA-49-4510 
"OR14I1 WILD-TYPE" "OR14I1 WILD-TYPE" "OR14I1 WILD-TYPE" "OR14I1 WILD-TYPE" 
      TCGA-49-4512       TCGA-49-4514       TCGA-49-6742       TCGA-49-6743 
"OR14I1 WILD-TYPE" "OR14I1 WILD-TYPE" "OR14I1 WILD-TYPE" "OR14I1 WILD-TYPE" 
      TCGA-49-6744       TCGA-49-6745       TCGA-50-5044       TCGA-50-5045 
"OR14I1 WILD-TYPE" "OR14I1 WILD-TYPE" "OR14I1 WILD-TYPE" "OR14I1 WILD-TYPE" 
      TCGA-50-5049       TCGA-50-5051       TCGA-50-5055       TCGA-50-5066 
"OR14I1 WILD-TYPE" "OR14I1 WILD-TYPE" "OR14I1 WILD-TYPE" "OR14I1 WILD-TYPE" 
      TCGA-50-5068       TCGA-50-5072       TCGA-50-5930       TCGA-50-5931 
"OR14I1 WILD-TYPE" "OR14I1 WILD-TYPE" "OR14I1 WILD-TYPE" "OR14I1 WILD-TYPE" 
      TCGA-50-5932       TCGA-50-5933       TCGA-50-5935       TCGA-50-5936 
"OR14I1 WILD-TYPE" "OR14I1 WILD-TYPE" "OR14I1 WILD-TYPE" "OR14I1 WILD-TYPE" 
      TCGA-50-5939       TCGA-50-5941       TCGA-50-5942       TCGA-50-5944 
"OR14I1 WILD-TYPE" "OR14I1 WILD-TYPE" "OR14I1 WILD-TYPE" "OR14I1 WILD-TYPE" 
      TCGA-50-5946       TCGA-50-6590       TCGA-50-6591       TCGA-50-6592 
"OR14I1 WILD-TYPE" "OR14I1 WILD-TYPE" "OR14I1 WILD-TYPE" "OR14I1 WILD-TYPE" 
      TCGA-50-6593       TCGA-50-6594       TCGA-50-6595       TCGA-50-6597 
"OR14I1 WILD-TYPE" "OR14I1 WILD-TYPE" "OR14I1 WILD-TYPE" "OR14I1 WILD-TYPE" 
      TCGA-55-1592       TCGA-55-1594       TCGA-55-1595       TCGA-55-1596 
"OR14I1 WILD-TYPE" "OR14I1 WILD-TYPE"   "OR14I1 MUTATED" "OR14I1 WILD-TYPE" 
      TCGA-55-5899       TCGA-55-6543       TCGA-55-6642       TCGA-55-6712 
"OR14I1 WILD-TYPE" "OR14I1 WILD-TYPE" "OR14I1 WILD-TYPE" "OR14I1 WILD-TYPE" 
      TCGA-64-1676       TCGA-64-1677       TCGA-64-1678       TCGA-64-1680 
  "OR14I1 MUTATED" "OR14I1 WILD-TYPE" "OR14I1 WILD-TYPE" "OR14I1 WILD-TYPE" 
      TCGA-64-5774       TCGA-64-5775       TCGA-64-5778       TCGA-64-5779 
"OR14I1 WILD-TYPE" "OR14I1 WILD-TYPE" "OR14I1 WILD-TYPE" "OR14I1 WILD-TYPE" 
      TCGA-64-5781       TCGA-64-5815       TCGA-67-3770       TCGA-67-3771 
"OR14I1 WILD-TYPE" "OR14I1 WILD-TYPE"   "OR14I1 MUTATED" "OR14I1 WILD-TYPE" 
      TCGA-67-3772       TCGA-67-3773       TCGA-67-3774       TCGA-67-6215 
"OR14I1 WILD-TYPE" "OR14I1 WILD-TYPE" "OR14I1 WILD-TYPE" "OR14I1 WILD-TYPE" 
      TCGA-67-6216       TCGA-67-6217       TCGA-71-6725       TCGA-73-4658 
"OR14I1 WILD-TYPE" "OR14I1 WILD-TYPE" "OR14I1 WILD-TYPE" "OR14I1 WILD-TYPE" 
      TCGA-73-4659       TCGA-73-4662       TCGA-73-4666       TCGA-73-4668 
  "OR14I1 MUTATED" "OR14I1 WILD-TYPE" "OR14I1 WILD-TYPE" "OR14I1 WILD-TYPE" 
      TCGA-73-4670       TCGA-73-4675       TCGA-73-4676       TCGA-73-4677 
"OR14I1 WILD-TYPE" "OR14I1 WILD-TYPE" "OR14I1 WILD-TYPE" "OR14I1 WILD-TYPE" 
      TCGA-91-6828       TCGA-91-6829       TCGA-91-6831       TCGA-91-6835 
"OR14I1 WILD-TYPE" "OR14I1 WILD-TYPE" "OR14I1 WILD-TYPE" "OR14I1 WILD-TYPE" 
      TCGA-91-6836 
"OR14I1 WILD-TYPE" 
[1] "hr=" "3.6"
D61V2, continuous
D61V3, binary
[1] "tbl2"
                  cls
clus               [,1] [,2]
  OR14I1 MUTATED      2    4
  OR14I1 WILD-TYPE   91   75
        clus
vv       OR14I1 MUTATED OR14I1 WILD-TYPE
  FEMALE              2               91
  MALE                4               75
D61V4, continuous
[1] "Remove cluster labels:" "OR14I1 MUTATED"        
clus
  OR14I1 MUTATED OR14I1 WILD-TYPE 
               1               11 
      TCGA-35-4122       TCGA-35-4123       TCGA-35-5375       TCGA-64-1677 
"OR14I1 WILD-TYPE" "OR14I1 WILD-TYPE" "OR14I1 WILD-TYPE" "OR14I1 WILD-TYPE" 
      TCGA-64-5778       TCGA-71-6725       TCGA-73-4662       TCGA-73-4666 
"OR14I1 WILD-TYPE" "OR14I1 WILD-TYPE" "OR14I1 WILD-TYPE" "OR14I1 WILD-TYPE" 
      TCGA-73-4668       TCGA-73-4676       TCGA-75-5122 
"OR14I1 WILD-TYPE" "OR14I1 WILD-TYPE" "OR14I1 WILD-TYPE" 
D61V5, multiclass
D61V6, multiclass
    clus
vv   OR14I1 MUTATED OR14I1 WILD-TYPE
  T1              4               37
  T2              2              106
  T3              0               14
  T4              0                8
D61V7, multiclass
       clus
vv      OR14I1 MUTATED OR14I1 WILD-TYPE
  N0                 5               90
  N1                 0               37
  N2+N3              1               34
D61V8, multiclass
    clus
vv   OR14I1 MUTATED OR14I1 WILD-TYPE
  M0              5              132
  M1              0                9
  MX              1               21
D61V9, multiclass
     clus
vv    OR14I1 MUTATED OR14I1 WILD-TYPE
  I                5               83
  II               0               33
  III              1               38
  IV               0                9
D61V10, binary
[1] "tbl2"
                  cls
clus               [,1] [,2]
  OR14I1 MUTATED      0    6
  OR14I1 WILD-TYPE   16  150
     clus
vv    OR14I1 MUTATED OR14I1 WILD-TYPE
  NO               0               16
  YES              6              150
D61V11, continuous
D61V12, continuous
D61V13, multiclass
                                             clus
vv                                            OR14I1 MUTATED OR14I1 WILD-TYPE
  CURRENT REFORMED SMOKER FOR < OR = 15 YEARS              3               59
  CURRENT REFORMED SMOKER FOR > 15 YEARS                   2               44
  CURRENT SMOKER                                           1               27
  LIFELONG NON-SMOKER                                      0               24
D61V14, continuous

Clustering(62) Variable = WDR49 MUTATION ANALYSIS
D62V1, survival
                 sevent
clus2              0  1
  WDR49 MUTATED    4  3
  WDR49 WILD-TYPE 95 47
  WDR49 MUTATED WDR49 WILD-TYPE 
              7             142 
  WDR49 MUTATED WDR49 WILD-TYPE 
              3              47 
$`WDR49 MUTATED`
TCGA-05-4396 TCGA-05-4432 TCGA-49-6743 TCGA-50-5045 TCGA-50-6590 TCGA-73-4666 
        9.96        25.02        12.13        71.47        42.31        20.28 
TCGA-73-4670 
        0.46 

$`WDR49 WILD-TYPE`
TCGA-05-4249 TCGA-05-4250 TCGA-05-4382 TCGA-05-4384 TCGA-05-4390 TCGA-05-4397 
       38.07         3.98        19.92        14.01        37.02        24.03 
TCGA-05-4398 TCGA-05-4402 TCGA-05-4405 TCGA-05-4415 TCGA-05-4417 TCGA-05-4418 
       47.05         8.02        20.05         2.96        14.93         8.98 
TCGA-05-4420 TCGA-05-4424 TCGA-05-4426 TCGA-05-4427 TCGA-05-4430 TCGA-05-4433 
       29.95        30.02        26.01        26.01        25.02        24.00 
TCGA-05-4434 TCGA-05-5420 TCGA-05-5423 TCGA-05-5425 TCGA-05-5429 TCGA-05-5715 
       15.02         1.02         4.96         2.96         0.99         2.04 
TCGA-35-3615 TCGA-35-4122 TCGA-35-4123 TCGA-35-5375 TCGA-38-4625 TCGA-38-4626 
        0.46         7.36         5.95         8.68        47.61        85.32 
TCGA-38-4627 TCGA-38-4628 TCGA-38-4629 TCGA-38-4630 TCGA-38-4631 TCGA-38-4632 
       37.71        49.02        28.37        35.28        11.64        44.61 
TCGA-38-6178 TCGA-44-2655 TCGA-44-2656 TCGA-44-2657 TCGA-44-2659 TCGA-44-2661 
        5.19        18.87        19.10        13.15        17.39         3.39 
TCGA-44-2662 TCGA-44-2665 TCGA-44-2666 TCGA-44-2668 TCGA-44-3396 TCGA-44-3398 
       15.78        13.15         3.19         8.09        10.22         8.32 
TCGA-44-3918 TCGA-44-3919 TCGA-44-4112 TCGA-44-5643 TCGA-44-5645 TCGA-44-6144 
        6.44         6.21         4.60         3.48         6.84         0.30 
TCGA-44-6145 TCGA-44-6146 TCGA-44-6147 TCGA-44-6148 TCGA-44-6774 TCGA-44-6775 
        3.35         9.93         7.76         3.12         5.42         2.70 
TCGA-44-6776 TCGA-44-6777 TCGA-44-6778 TCGA-44-6779 TCGA-49-4486 TCGA-49-4487 
       63.72        32.45        36.49        16.41        76.21        28.11 
TCGA-49-4488 TCGA-49-4490 TCGA-49-4494 TCGA-49-4501 TCGA-49-4505 TCGA-49-4506 
       28.57        12.66        35.54        46.72        14.07        32.84 
TCGA-49-4507 TCGA-49-4510 TCGA-49-4512 TCGA-49-4514 TCGA-49-6742 TCGA-49-6744 
        8.81        29.46        29.75        43.20        15.02        12.99 
TCGA-49-6745 TCGA-50-5044 TCGA-50-5049 TCGA-50-5051 TCGA-50-5055 TCGA-50-5066 
        4.93        20.48        48.82        14.96        25.81         9.76 
TCGA-50-5068 TCGA-50-5072 TCGA-50-5930 TCGA-50-5931 TCGA-50-5932 TCGA-50-5933 
       49.28         8.05         9.27         8.78        35.87        77.88 
TCGA-50-5935 TCGA-50-5936 TCGA-50-5939 TCGA-50-5941 TCGA-50-5942 TCGA-50-5944 
       21.47         8.45        15.12         9.37         4.44        12.26 
TCGA-50-5946 TCGA-50-6591 TCGA-50-6592 TCGA-50-6593 TCGA-50-6594 TCGA-50-6595 
       11.47         3.88        25.51        11.05        12.16         6.21 
TCGA-50-6597 TCGA-55-1592 TCGA-55-1594 TCGA-55-1595 TCGA-55-1596 TCGA-55-5899 
       33.37        23.05        38.73        48.62        45.17         2.86 
TCGA-55-6543 TCGA-55-6642 TCGA-55-6712 TCGA-64-1676 TCGA-64-1677 TCGA-64-1678 
        0.07        32.61         0.79        56.81        20.65        39.09 
TCGA-64-1680 TCGA-64-5774 TCGA-64-5775 TCGA-64-5778 TCGA-64-5779 TCGA-64-5781 
       37.02        83.84         0.10        30.44        16.67        39.52 
TCGA-64-5815 TCGA-67-3770 TCGA-67-3771 TCGA-67-3772 TCGA-67-3773 TCGA-67-3774 
        7.33         0.99         1.97         0.59         2.04         0.59 
TCGA-67-6215 TCGA-67-6216 TCGA-67-6217 TCGA-71-6725 TCGA-73-4658 TCGA-73-4659 
        0.89         0.69        13.87         2.01        52.57        23.38 
TCGA-73-4662 TCGA-73-4668 TCGA-73-4675 TCGA-73-4676 TCGA-73-4677 TCGA-91-6828 
       29.95        15.35         1.32         4.01         1.25         1.22 
TCGA-91-6829 TCGA-91-6831 TCGA-91-6835 TCGA-91-6836 
       41.33         1.28         1.15         0.36 

  WDR49 MUTATED WDR49 WILD-TYPE 
           0.46            0.07 
  WDR49 MUTATED WDR49 WILD-TYPE 
          71.47           85.32 
  WDR49 MUTATED WDR49 WILD-TYPE 
          20.28           13.51 
[1] "0.5 - 71.5 (20.3)" "0.1 - 85.3 (13.5)"
     TCGA-05-4249      TCGA-05-4250      TCGA-05-4382      TCGA-05-4384 
"WDR49 WILD-TYPE" "WDR49 WILD-TYPE" "WDR49 WILD-TYPE" "WDR49 WILD-TYPE" 
     TCGA-05-4390      TCGA-05-4396      TCGA-05-4397      TCGA-05-4398 
"WDR49 WILD-TYPE"   "WDR49 MUTATED" "WDR49 WILD-TYPE" "WDR49 WILD-TYPE" 
     TCGA-05-4402      TCGA-05-4405      TCGA-05-4415      TCGA-05-4417 
"WDR49 WILD-TYPE" "WDR49 WILD-TYPE" "WDR49 WILD-TYPE" "WDR49 WILD-TYPE" 
     TCGA-05-4418      TCGA-05-4420      TCGA-05-4424      TCGA-05-4426 
"WDR49 WILD-TYPE" "WDR49 WILD-TYPE" "WDR49 WILD-TYPE" "WDR49 WILD-TYPE" 
     TCGA-05-4427      TCGA-05-4430      TCGA-05-4432      TCGA-05-4433 
"WDR49 WILD-TYPE" "WDR49 WILD-TYPE"   "WDR49 MUTATED" "WDR49 WILD-TYPE" 
     TCGA-05-4434      TCGA-05-5420      TCGA-05-5423      TCGA-05-5425 
"WDR49 WILD-TYPE" "WDR49 WILD-TYPE" "WDR49 WILD-TYPE" "WDR49 WILD-TYPE" 
     TCGA-05-5429      TCGA-05-5715      TCGA-35-3615      TCGA-35-4122 
"WDR49 WILD-TYPE" "WDR49 WILD-TYPE" "WDR49 WILD-TYPE" "WDR49 WILD-TYPE" 
     TCGA-35-4123      TCGA-35-5375      TCGA-38-4625      TCGA-38-4626 
"WDR49 WILD-TYPE" "WDR49 WILD-TYPE" "WDR49 WILD-TYPE" "WDR49 WILD-TYPE" 
     TCGA-38-4627      TCGA-38-4628      TCGA-38-4629      TCGA-38-4630 
"WDR49 WILD-TYPE" "WDR49 WILD-TYPE" "WDR49 WILD-TYPE" "WDR49 WILD-TYPE" 
     TCGA-38-4631      TCGA-38-4632      TCGA-38-6178      TCGA-44-2655 
"WDR49 WILD-TYPE" "WDR49 WILD-TYPE" "WDR49 WILD-TYPE" "WDR49 WILD-TYPE" 
     TCGA-44-2656      TCGA-44-2657      TCGA-44-2659      TCGA-44-2661 
"WDR49 WILD-TYPE" "WDR49 WILD-TYPE" "WDR49 WILD-TYPE" "WDR49 WILD-TYPE" 
     TCGA-44-2662      TCGA-44-2665      TCGA-44-2666      TCGA-44-2668 
"WDR49 WILD-TYPE" "WDR49 WILD-TYPE" "WDR49 WILD-TYPE" "WDR49 WILD-TYPE" 
     TCGA-44-3396      TCGA-44-3398      TCGA-44-3918      TCGA-44-3919 
"WDR49 WILD-TYPE" "WDR49 WILD-TYPE" "WDR49 WILD-TYPE" "WDR49 WILD-TYPE" 
     TCGA-44-4112      TCGA-44-5643      TCGA-44-5645      TCGA-44-6144 
"WDR49 WILD-TYPE" "WDR49 WILD-TYPE" "WDR49 WILD-TYPE" "WDR49 WILD-TYPE" 
     TCGA-44-6145      TCGA-44-6146      TCGA-44-6147      TCGA-44-6148 
"WDR49 WILD-TYPE" "WDR49 WILD-TYPE" "WDR49 WILD-TYPE" "WDR49 WILD-TYPE" 
     TCGA-44-6774      TCGA-44-6775      TCGA-44-6776      TCGA-44-6777 
"WDR49 WILD-TYPE" "WDR49 WILD-TYPE" "WDR49 WILD-TYPE" "WDR49 WILD-TYPE" 
     TCGA-44-6778      TCGA-44-6779      TCGA-49-4486      TCGA-49-4487 
"WDR49 WILD-TYPE" "WDR49 WILD-TYPE" "WDR49 WILD-TYPE" "WDR49 WILD-TYPE" 
     TCGA-49-4488      TCGA-49-4490      TCGA-49-4494      TCGA-49-4501 
"WDR49 WILD-TYPE" "WDR49 WILD-TYPE" "WDR49 WILD-TYPE" "WDR49 WILD-TYPE" 
     TCGA-49-4505      TCGA-49-4506      TCGA-49-4507      TCGA-49-4510 
"WDR49 WILD-TYPE" "WDR49 WILD-TYPE" "WDR49 WILD-TYPE" "WDR49 WILD-TYPE" 
     TCGA-49-4512      TCGA-49-4514      TCGA-49-6742      TCGA-49-6743 
"WDR49 WILD-TYPE" "WDR49 WILD-TYPE" "WDR49 WILD-TYPE"   "WDR49 MUTATED" 
     TCGA-49-6744      TCGA-49-6745      TCGA-50-5044      TCGA-50-5045 
"WDR49 WILD-TYPE" "WDR49 WILD-TYPE" "WDR49 WILD-TYPE"   "WDR49 MUTATED" 
     TCGA-50-5049      TCGA-50-5051      TCGA-50-5055      TCGA-50-5066 
"WDR49 WILD-TYPE" "WDR49 WILD-TYPE" "WDR49 WILD-TYPE" "WDR49 WILD-TYPE" 
     TCGA-50-5068      TCGA-50-5072      TCGA-50-5930      TCGA-50-5931 
"WDR49 WILD-TYPE" "WDR49 WILD-TYPE" "WDR49 WILD-TYPE" "WDR49 WILD-TYPE" 
     TCGA-50-5932      TCGA-50-5933      TCGA-50-5935      TCGA-50-5936 
"WDR49 WILD-TYPE" "WDR49 WILD-TYPE" "WDR49 WILD-TYPE" "WDR49 WILD-TYPE" 
     TCGA-50-5939      TCGA-50-5941      TCGA-50-5942      TCGA-50-5944 
"WDR49 WILD-TYPE" "WDR49 WILD-TYPE" "WDR49 WILD-TYPE" "WDR49 WILD-TYPE" 
     TCGA-50-5946      TCGA-50-6590      TCGA-50-6591      TCGA-50-6592 
"WDR49 WILD-TYPE"   "WDR49 MUTATED" "WDR49 WILD-TYPE" "WDR49 WILD-TYPE" 
     TCGA-50-6593      TCGA-50-6594      TCGA-50-6595      TCGA-50-6597 
"WDR49 WILD-TYPE" "WDR49 WILD-TYPE" "WDR49 WILD-TYPE" "WDR49 WILD-TYPE" 
     TCGA-55-1592      TCGA-55-1594      TCGA-55-1595      TCGA-55-1596 
"WDR49 WILD-TYPE" "WDR49 WILD-TYPE" "WDR49 WILD-TYPE" "WDR49 WILD-TYPE" 
     TCGA-55-5899      TCGA-55-6543      TCGA-55-6642      TCGA-55-6712 
"WDR49 WILD-TYPE" "WDR49 WILD-TYPE" "WDR49 WILD-TYPE" "WDR49 WILD-TYPE" 
     TCGA-64-1676      TCGA-64-1677      TCGA-64-1678      TCGA-64-1680 
"WDR49 WILD-TYPE" "WDR49 WILD-TYPE" "WDR49 WILD-TYPE" "WDR49 WILD-TYPE" 
     TCGA-64-5774      TCGA-64-5775      TCGA-64-5778      TCGA-64-5779 
"WDR49 WILD-TYPE" "WDR49 WILD-TYPE" "WDR49 WILD-TYPE" "WDR49 WILD-TYPE" 
     TCGA-64-5781      TCGA-64-5815      TCGA-67-3770      TCGA-67-3771 
"WDR49 WILD-TYPE" "WDR49 WILD-TYPE" "WDR49 WILD-TYPE" "WDR49 WILD-TYPE" 
     TCGA-67-3772      TCGA-67-3773      TCGA-67-3774      TCGA-67-6215 
"WDR49 WILD-TYPE" "WDR49 WILD-TYPE" "WDR49 WILD-TYPE" "WDR49 WILD-TYPE" 
     TCGA-67-6216      TCGA-67-6217      TCGA-71-6725      TCGA-73-4658 
"WDR49 WILD-TYPE" "WDR49 WILD-TYPE" "WDR49 WILD-TYPE" "WDR49 WILD-TYPE" 
     TCGA-73-4659      TCGA-73-4662      TCGA-73-4666      TCGA-73-4668 
"WDR49 WILD-TYPE" "WDR49 WILD-TYPE"   "WDR49 MUTATED" "WDR49 WILD-TYPE" 
     TCGA-73-4670      TCGA-73-4675      TCGA-73-4676      TCGA-73-4677 
  "WDR49 MUTATED" "WDR49 WILD-TYPE" "WDR49 WILD-TYPE" "WDR49 WILD-TYPE" 
     TCGA-91-6828      TCGA-91-6829      TCGA-91-6831      TCGA-91-6835 
"WDR49 WILD-TYPE" "WDR49 WILD-TYPE" "WDR49 WILD-TYPE" "WDR49 WILD-TYPE" 
     TCGA-91-6836 
"WDR49 WILD-TYPE" 
     TCGA-05-4249      TCGA-05-4250      TCGA-05-4382      TCGA-05-4384 
"WDR49 WILD-TYPE" "WDR49 WILD-TYPE" "WDR49 WILD-TYPE" "WDR49 WILD-TYPE" 
     TCGA-05-4390      TCGA-05-4396      TCGA-05-4397      TCGA-05-4398 
"WDR49 WILD-TYPE"   "WDR49 MUTATED" "WDR49 WILD-TYPE" "WDR49 WILD-TYPE" 
     TCGA-05-4402      TCGA-05-4405      TCGA-05-4415      TCGA-05-4417 
"WDR49 WILD-TYPE" "WDR49 WILD-TYPE" "WDR49 WILD-TYPE" "WDR49 WILD-TYPE" 
     TCGA-05-4418      TCGA-05-4420      TCGA-05-4424      TCGA-05-4426 
"WDR49 WILD-TYPE" "WDR49 WILD-TYPE" "WDR49 WILD-TYPE" "WDR49 WILD-TYPE" 
     TCGA-05-4427      TCGA-05-4430      TCGA-05-4432      TCGA-05-4433 
"WDR49 WILD-TYPE" "WDR49 WILD-TYPE"   "WDR49 MUTATED" "WDR49 WILD-TYPE" 
     TCGA-05-4434      TCGA-05-5420      TCGA-05-5423      TCGA-05-5425 
"WDR49 WILD-TYPE" "WDR49 WILD-TYPE" "WDR49 WILD-TYPE" "WDR49 WILD-TYPE" 
     TCGA-05-5429      TCGA-05-5715      TCGA-35-3615      TCGA-35-4122 
"WDR49 WILD-TYPE" "WDR49 WILD-TYPE" "WDR49 WILD-TYPE" "WDR49 WILD-TYPE" 
     TCGA-35-4123      TCGA-35-5375      TCGA-38-4625      TCGA-38-4626 
"WDR49 WILD-TYPE" "WDR49 WILD-TYPE" "WDR49 WILD-TYPE" "WDR49 WILD-TYPE" 
     TCGA-38-4627      TCGA-38-4628      TCGA-38-4629      TCGA-38-4630 
"WDR49 WILD-TYPE" "WDR49 WILD-TYPE" "WDR49 WILD-TYPE" "WDR49 WILD-TYPE" 
     TCGA-38-4631      TCGA-38-4632      TCGA-38-6178      TCGA-44-2655 
"WDR49 WILD-TYPE" "WDR49 WILD-TYPE" "WDR49 WILD-TYPE" "WDR49 WILD-TYPE" 
     TCGA-44-2656      TCGA-44-2657      TCGA-44-2659      TCGA-44-2661 
"WDR49 WILD-TYPE" "WDR49 WILD-TYPE" "WDR49 WILD-TYPE" "WDR49 WILD-TYPE" 
     TCGA-44-2662      TCGA-44-2665      TCGA-44-2666      TCGA-44-2668 
"WDR49 WILD-TYPE" "WDR49 WILD-TYPE" "WDR49 WILD-TYPE" "WDR49 WILD-TYPE" 
     TCGA-44-3396      TCGA-44-3398      TCGA-44-3918      TCGA-44-3919 
"WDR49 WILD-TYPE" "WDR49 WILD-TYPE" "WDR49 WILD-TYPE" "WDR49 WILD-TYPE" 
     TCGA-44-4112      TCGA-44-5643      TCGA-44-5645      TCGA-44-6144 
"WDR49 WILD-TYPE" "WDR49 WILD-TYPE" "WDR49 WILD-TYPE" "WDR49 WILD-TYPE" 
     TCGA-44-6145      TCGA-44-6146      TCGA-44-6147      TCGA-44-6148 
"WDR49 WILD-TYPE" "WDR49 WILD-TYPE" "WDR49 WILD-TYPE" "WDR49 WILD-TYPE" 
     TCGA-44-6774      TCGA-44-6775      TCGA-44-6776      TCGA-44-6777 
"WDR49 WILD-TYPE" "WDR49 WILD-TYPE" "WDR49 WILD-TYPE" "WDR49 WILD-TYPE" 
     TCGA-44-6778      TCGA-44-6779      TCGA-49-4486      TCGA-49-4487 
"WDR49 WILD-TYPE" "WDR49 WILD-TYPE" "WDR49 WILD-TYPE" "WDR49 WILD-TYPE" 
     TCGA-49-4488      TCGA-49-4490      TCGA-49-4494      TCGA-49-4501 
"WDR49 WILD-TYPE" "WDR49 WILD-TYPE" "WDR49 WILD-TYPE" "WDR49 WILD-TYPE" 
     TCGA-49-4505      TCGA-49-4506      TCGA-49-4507      TCGA-49-4510 
"WDR49 WILD-TYPE" "WDR49 WILD-TYPE" "WDR49 WILD-TYPE" "WDR49 WILD-TYPE" 
     TCGA-49-4512      TCGA-49-4514      TCGA-49-6742      TCGA-49-6743 
"WDR49 WILD-TYPE" "WDR49 WILD-TYPE" "WDR49 WILD-TYPE"   "WDR49 MUTATED" 
     TCGA-49-6744      TCGA-49-6745      TCGA-50-5044      TCGA-50-5045 
"WDR49 WILD-TYPE" "WDR49 WILD-TYPE" "WDR49 WILD-TYPE"   "WDR49 MUTATED" 
     TCGA-50-5049      TCGA-50-5051      TCGA-50-5055      TCGA-50-5066 
"WDR49 WILD-TYPE" "WDR49 WILD-TYPE" "WDR49 WILD-TYPE" "WDR49 WILD-TYPE" 
     TCGA-50-5068      TCGA-50-5072      TCGA-50-5930      TCGA-50-5931 
"WDR49 WILD-TYPE" "WDR49 WILD-TYPE" "WDR49 WILD-TYPE" "WDR49 WILD-TYPE" 
     TCGA-50-5932      TCGA-50-5933      TCGA-50-5935      TCGA-50-5936 
"WDR49 WILD-TYPE" "WDR49 WILD-TYPE" "WDR49 WILD-TYPE" "WDR49 WILD-TYPE" 
     TCGA-50-5939      TCGA-50-5941      TCGA-50-5942      TCGA-50-5944 
"WDR49 WILD-TYPE" "WDR49 WILD-TYPE" "WDR49 WILD-TYPE" "WDR49 WILD-TYPE" 
     TCGA-50-5946      TCGA-50-6590      TCGA-50-6591      TCGA-50-6592 
"WDR49 WILD-TYPE"   "WDR49 MUTATED" "WDR49 WILD-TYPE" "WDR49 WILD-TYPE" 
     TCGA-50-6593      TCGA-50-6594      TCGA-50-6595      TCGA-50-6597 
"WDR49 WILD-TYPE" "WDR49 WILD-TYPE" "WDR49 WILD-TYPE" "WDR49 WILD-TYPE" 
     TCGA-55-1592      TCGA-55-1594      TCGA-55-1595      TCGA-55-1596 
"WDR49 WILD-TYPE" "WDR49 WILD-TYPE" "WDR49 WILD-TYPE" "WDR49 WILD-TYPE" 
     TCGA-55-5899      TCGA-55-6543      TCGA-55-6642      TCGA-55-6712 
"WDR49 WILD-TYPE" "WDR49 WILD-TYPE" "WDR49 WILD-TYPE" "WDR49 WILD-TYPE" 
     TCGA-64-1676      TCGA-64-1677      TCGA-64-1678      TCGA-64-1680 
"WDR49 WILD-TYPE" "WDR49 WILD-TYPE" "WDR49 WILD-TYPE" "WDR49 WILD-TYPE" 
     TCGA-64-5774      TCGA-64-5775      TCGA-64-5778      TCGA-64-5779 
"WDR49 WILD-TYPE" "WDR49 WILD-TYPE" "WDR49 WILD-TYPE" "WDR49 WILD-TYPE" 
     TCGA-64-5781      TCGA-64-5815      TCGA-67-3770      TCGA-67-3771 
"WDR49 WILD-TYPE" "WDR49 WILD-TYPE" "WDR49 WILD-TYPE" "WDR49 WILD-TYPE" 
     TCGA-67-3772      TCGA-67-3773      TCGA-67-3774      TCGA-67-6215 
"WDR49 WILD-TYPE" "WDR49 WILD-TYPE" "WDR49 WILD-TYPE" "WDR49 WILD-TYPE" 
     TCGA-67-6216      TCGA-67-6217      TCGA-71-6725      TCGA-73-4658 
"WDR49 WILD-TYPE" "WDR49 WILD-TYPE" "WDR49 WILD-TYPE" "WDR49 WILD-TYPE" 
     TCGA-73-4659      TCGA-73-4662      TCGA-73-4666      TCGA-73-4668 
"WDR49 WILD-TYPE" "WDR49 WILD-TYPE"   "WDR49 MUTATED" "WDR49 WILD-TYPE" 
     TCGA-73-4670      TCGA-73-4675      TCGA-73-4676      TCGA-73-4677 
  "WDR49 MUTATED" "WDR49 WILD-TYPE" "WDR49 WILD-TYPE" "WDR49 WILD-TYPE" 
     TCGA-91-6828      TCGA-91-6829      TCGA-91-6831      TCGA-91-6835 
"WDR49 WILD-TYPE" "WDR49 WILD-TYPE" "WDR49 WILD-TYPE" "WDR49 WILD-TYPE" 
     TCGA-91-6836 
"WDR49 WILD-TYPE" 
     TCGA-05-4249      TCGA-05-4250      TCGA-05-4382      TCGA-05-4384 
"WDR49 WILD-TYPE" "WDR49 WILD-TYPE" "WDR49 WILD-TYPE" "WDR49 WILD-TYPE" 
     TCGA-05-4390      TCGA-05-4396      TCGA-05-4397      TCGA-05-4398 
"WDR49 WILD-TYPE"   "WDR49 MUTATED" "WDR49 WILD-TYPE" "WDR49 WILD-TYPE" 
     TCGA-05-4402      TCGA-05-4405      TCGA-05-4415      TCGA-05-4417 
"WDR49 WILD-TYPE" "WDR49 WILD-TYPE" "WDR49 WILD-TYPE" "WDR49 WILD-TYPE" 
     TCGA-05-4418      TCGA-05-4420      TCGA-05-4424      TCGA-05-4426 
"WDR49 WILD-TYPE" "WDR49 WILD-TYPE" "WDR49 WILD-TYPE" "WDR49 WILD-TYPE" 
     TCGA-05-4427      TCGA-05-4430      TCGA-05-4432      TCGA-05-4433 
"WDR49 WILD-TYPE" "WDR49 WILD-TYPE"   "WDR49 MUTATED" "WDR49 WILD-TYPE" 
     TCGA-05-4434      TCGA-05-5420      TCGA-05-5423      TCGA-05-5425 
"WDR49 WILD-TYPE" "WDR49 WILD-TYPE" "WDR49 WILD-TYPE" "WDR49 WILD-TYPE" 
     TCGA-05-5429      TCGA-05-5715      TCGA-35-3615      TCGA-35-4122 
"WDR49 WILD-TYPE" "WDR49 WILD-TYPE" "WDR49 WILD-TYPE" "WDR49 WILD-TYPE" 
     TCGA-35-4123      TCGA-35-5375      TCGA-38-4625      TCGA-38-4626 
"WDR49 WILD-TYPE" "WDR49 WILD-TYPE" "WDR49 WILD-TYPE" "WDR49 WILD-TYPE" 
     TCGA-38-4627      TCGA-38-4628      TCGA-38-4629      TCGA-38-4630 
"WDR49 WILD-TYPE" "WDR49 WILD-TYPE" "WDR49 WILD-TYPE" "WDR49 WILD-TYPE" 
     TCGA-38-4631      TCGA-38-4632      TCGA-38-6178      TCGA-44-2655 
"WDR49 WILD-TYPE" "WDR49 WILD-TYPE" "WDR49 WILD-TYPE" "WDR49 WILD-TYPE" 
     TCGA-44-2656      TCGA-44-2657      TCGA-44-2659      TCGA-44-2661 
"WDR49 WILD-TYPE" "WDR49 WILD-TYPE" "WDR49 WILD-TYPE" "WDR49 WILD-TYPE" 
     TCGA-44-2662      TCGA-44-2665      TCGA-44-2666      TCGA-44-2668 
"WDR49 WILD-TYPE" "WDR49 WILD-TYPE" "WDR49 WILD-TYPE" "WDR49 WILD-TYPE" 
     TCGA-44-3396      TCGA-44-3398      TCGA-44-3918      TCGA-44-3919 
"WDR49 WILD-TYPE" "WDR49 WILD-TYPE" "WDR49 WILD-TYPE" "WDR49 WILD-TYPE" 
     TCGA-44-4112      TCGA-44-5643      TCGA-44-5645      TCGA-44-6144 
"WDR49 WILD-TYPE" "WDR49 WILD-TYPE" "WDR49 WILD-TYPE" "WDR49 WILD-TYPE" 
     TCGA-44-6145      TCGA-44-6146      TCGA-44-6147      TCGA-44-6148 
"WDR49 WILD-TYPE" "WDR49 WILD-TYPE" "WDR49 WILD-TYPE" "WDR49 WILD-TYPE" 
     TCGA-44-6774      TCGA-44-6775      TCGA-44-6776      TCGA-44-6777 
"WDR49 WILD-TYPE" "WDR49 WILD-TYPE" "WDR49 WILD-TYPE" "WDR49 WILD-TYPE" 
     TCGA-44-6778      TCGA-44-6779      TCGA-49-4486      TCGA-49-4487 
"WDR49 WILD-TYPE" "WDR49 WILD-TYPE" "WDR49 WILD-TYPE" "WDR49 WILD-TYPE" 
     TCGA-49-4488      TCGA-49-4490      TCGA-49-4494      TCGA-49-4501 
"WDR49 WILD-TYPE" "WDR49 WILD-TYPE" "WDR49 WILD-TYPE" "WDR49 WILD-TYPE" 
     TCGA-49-4505      TCGA-49-4506      TCGA-49-4507      TCGA-49-4510 
"WDR49 WILD-TYPE" "WDR49 WILD-TYPE" "WDR49 WILD-TYPE" "WDR49 WILD-TYPE" 
     TCGA-49-4512      TCGA-49-4514      TCGA-49-6742      TCGA-49-6743 
"WDR49 WILD-TYPE" "WDR49 WILD-TYPE" "WDR49 WILD-TYPE"   "WDR49 MUTATED" 
     TCGA-49-6744      TCGA-49-6745      TCGA-50-5044      TCGA-50-5045 
"WDR49 WILD-TYPE" "WDR49 WILD-TYPE" "WDR49 WILD-TYPE"   "WDR49 MUTATED" 
     TCGA-50-5049      TCGA-50-5051      TCGA-50-5055      TCGA-50-5066 
"WDR49 WILD-TYPE" "WDR49 WILD-TYPE" "WDR49 WILD-TYPE" "WDR49 WILD-TYPE" 
     TCGA-50-5068      TCGA-50-5072      TCGA-50-5930      TCGA-50-5931 
"WDR49 WILD-TYPE" "WDR49 WILD-TYPE" "WDR49 WILD-TYPE" "WDR49 WILD-TYPE" 
     TCGA-50-5932      TCGA-50-5933      TCGA-50-5935      TCGA-50-5936 
"WDR49 WILD-TYPE" "WDR49 WILD-TYPE" "WDR49 WILD-TYPE" "WDR49 WILD-TYPE" 
     TCGA-50-5939      TCGA-50-5941      TCGA-50-5942      TCGA-50-5944 
"WDR49 WILD-TYPE" "WDR49 WILD-TYPE" "WDR49 WILD-TYPE" "WDR49 WILD-TYPE" 
     TCGA-50-5946      TCGA-50-6590      TCGA-50-6591      TCGA-50-6592 
"WDR49 WILD-TYPE"   "WDR49 MUTATED" "WDR49 WILD-TYPE" "WDR49 WILD-TYPE" 
     TCGA-50-6593      TCGA-50-6594      TCGA-50-6595      TCGA-50-6597 
"WDR49 WILD-TYPE" "WDR49 WILD-TYPE" "WDR49 WILD-TYPE" "WDR49 WILD-TYPE" 
     TCGA-55-1592      TCGA-55-1594      TCGA-55-1595      TCGA-55-1596 
"WDR49 WILD-TYPE" "WDR49 WILD-TYPE" "WDR49 WILD-TYPE" "WDR49 WILD-TYPE" 
     TCGA-55-5899      TCGA-55-6543      TCGA-55-6642      TCGA-55-6712 
"WDR49 WILD-TYPE" "WDR49 WILD-TYPE" "WDR49 WILD-TYPE" "WDR49 WILD-TYPE" 
     TCGA-64-1676      TCGA-64-1677      TCGA-64-1678      TCGA-64-1680 
"WDR49 WILD-TYPE" "WDR49 WILD-TYPE" "WDR49 WILD-TYPE" "WDR49 WILD-TYPE" 
     TCGA-64-5774      TCGA-64-5775      TCGA-64-5778      TCGA-64-5779 
"WDR49 WILD-TYPE" "WDR49 WILD-TYPE" "WDR49 WILD-TYPE" "WDR49 WILD-TYPE" 
     TCGA-64-5781      TCGA-64-5815      TCGA-67-3770      TCGA-67-3771 
"WDR49 WILD-TYPE" "WDR49 WILD-TYPE" "WDR49 WILD-TYPE" "WDR49 WILD-TYPE" 
     TCGA-67-3772      TCGA-67-3773      TCGA-67-3774      TCGA-67-6215 
"WDR49 WILD-TYPE" "WDR49 WILD-TYPE" "WDR49 WILD-TYPE" "WDR49 WILD-TYPE" 
     TCGA-67-6216      TCGA-67-6217      TCGA-71-6725      TCGA-73-4658 
"WDR49 WILD-TYPE" "WDR49 WILD-TYPE" "WDR49 WILD-TYPE" "WDR49 WILD-TYPE" 
     TCGA-73-4659      TCGA-73-4662      TCGA-73-4666      TCGA-73-4668 
"WDR49 WILD-TYPE" "WDR49 WILD-TYPE"   "WDR49 MUTATED" "WDR49 WILD-TYPE" 
     TCGA-73-4670      TCGA-73-4675      TCGA-73-4676      TCGA-73-4677 
  "WDR49 MUTATED" "WDR49 WILD-TYPE" "WDR49 WILD-TYPE" "WDR49 WILD-TYPE" 
     TCGA-91-6828      TCGA-91-6829      TCGA-91-6831      TCGA-91-6835 
"WDR49 WILD-TYPE" "WDR49 WILD-TYPE" "WDR49 WILD-TYPE" "WDR49 WILD-TYPE" 
     TCGA-91-6836 
"WDR49 WILD-TYPE" 
[1] "hr=" "1"  
D62V2, continuous
D62V3, binary
[1] "tbl2"
                 cls
clus              [,1] [,2]
  WDR49 MUTATED      6    3
  WDR49 WILD-TYPE   87   76
        clus
vv       WDR49 MUTATED WDR49 WILD-TYPE
  FEMALE             6              87
  MALE               3              76
D62V4, continuous
[1] "Remove cluster labels:" "WDR49 MUTATED"         
clus
  WDR49 MUTATED WDR49 WILD-TYPE 
              1              11 
     TCGA-35-4122      TCGA-35-4123      TCGA-35-5375      TCGA-64-1677 
"WDR49 WILD-TYPE" "WDR49 WILD-TYPE" "WDR49 WILD-TYPE" "WDR49 WILD-TYPE" 
     TCGA-64-5778      TCGA-71-6725      TCGA-73-4659      TCGA-73-4662 
"WDR49 WILD-TYPE" "WDR49 WILD-TYPE" "WDR49 WILD-TYPE" "WDR49 WILD-TYPE" 
     TCGA-73-4668      TCGA-73-4676      TCGA-75-5122 
"WDR49 WILD-TYPE" "WDR49 WILD-TYPE" "WDR49 WILD-TYPE" 
D62V5, multiclass
D62V6, multiclass
    clus
vv   WDR49 MUTATED WDR49 WILD-TYPE
  T1             2              39
  T2             6             102
  T3             0              14
  T4             1               7
D62V7, multiclass
       clus
vv      WDR49 MUTATED WDR49 WILD-TYPE
  N0                5              90
  N1                3              34
  N2+N3             1              34
D62V8, multiclass
    clus
vv   WDR49 MUTATED WDR49 WILD-TYPE
  M0             6             131
  M1             2               7
  MX             1              21
D62V9, multiclass
     clus
vv    WDR49 MUTATED WDR49 WILD-TYPE
  I               4              84
  II              1              32
  III             2              37
  IV              2               7
D62V10, binary
[1] "tbl2"
                 cls
clus              [,1] [,2]
  WDR49 MUTATED      2    7
  WDR49 WILD-TYPE   14  149
     clus
vv    WDR49 MUTATED WDR49 WILD-TYPE
  NO              2              14
  YES             7             149
D62V11, continuous
D62V12, continuous
D62V13, multiclass
                                             clus
vv                                            WDR49 MUTATED WDR49 WILD-TYPE
  CURRENT REFORMED SMOKER FOR < OR = 15 YEARS             5              57
  CURRENT REFORMED SMOKER FOR > 15 YEARS                  1              45
  CURRENT SMOKER                                          2              26
  LIFELONG NON-SMOKER                                     0              24
D62V14, continuous

Clustering(63) Variable = KRTAP15-1 MUTATION ANALYSIS
D63V1, survival
                     sevent
clus2                  0  1
  KRTAP15-1 MUTATED    3  1
  KRTAP15-1 WILD-TYPE 96 49
  KRTAP15-1 MUTATED KRTAP15-1 WILD-TYPE 
                  4                 145 
  KRTAP15-1 MUTATED KRTAP15-1 WILD-TYPE 
                  1                  49 
$`KRTAP15-1 MUTATED`
TCGA-05-4396 TCGA-05-4432 TCGA-44-6774 TCGA-67-3771 
        9.96        25.02         5.42         1.97 

$`KRTAP15-1 WILD-TYPE`
TCGA-05-4249 TCGA-05-4250 TCGA-05-4382 TCGA-05-4384 TCGA-05-4390 TCGA-05-4397 
       38.07         3.98        19.92        14.01        37.02        24.03 
TCGA-05-4398 TCGA-05-4402 TCGA-05-4405 TCGA-05-4415 TCGA-05-4417 TCGA-05-4418 
       47.05         8.02        20.05         2.96        14.93         8.98 
TCGA-05-4420 TCGA-05-4424 TCGA-05-4426 TCGA-05-4427 TCGA-05-4430 TCGA-05-4433 
       29.95        30.02        26.01        26.01        25.02        24.00 
TCGA-05-4434 TCGA-05-5420 TCGA-05-5423 TCGA-05-5425 TCGA-05-5429 TCGA-05-5715 
       15.02         1.02         4.96         2.96         0.99         2.04 
TCGA-35-3615 TCGA-35-4122 TCGA-35-4123 TCGA-35-5375 TCGA-38-4625 TCGA-38-4626 
        0.46         7.36         5.95         8.68        47.61        85.32 
TCGA-38-4627 TCGA-38-4628 TCGA-38-4629 TCGA-38-4630 TCGA-38-4631 TCGA-38-4632 
       37.71        49.02        28.37        35.28        11.64        44.61 
TCGA-38-6178 TCGA-44-2655 TCGA-44-2656 TCGA-44-2657 TCGA-44-2659 TCGA-44-2661 
        5.19        18.87        19.10        13.15        17.39         3.39 
TCGA-44-2662 TCGA-44-2665 TCGA-44-2666 TCGA-44-2668 TCGA-44-3396 TCGA-44-3398 
       15.78        13.15         3.19         8.09        10.22         8.32 
TCGA-44-3918 TCGA-44-3919 TCGA-44-4112 TCGA-44-5643 TCGA-44-5645 TCGA-44-6144 
        6.44         6.21         4.60         3.48         6.84         0.30 
TCGA-44-6145 TCGA-44-6146 TCGA-44-6147 TCGA-44-6148 TCGA-44-6775 TCGA-44-6776 
        3.35         9.93         7.76         3.12         2.70        63.72 
TCGA-44-6777 TCGA-44-6778 TCGA-44-6779 TCGA-49-4486 TCGA-49-4487 TCGA-49-4488 
       32.45        36.49        16.41        76.21        28.11        28.57 
TCGA-49-4490 TCGA-49-4494 TCGA-49-4501 TCGA-49-4505 TCGA-49-4506 TCGA-49-4507 
       12.66        35.54        46.72        14.07        32.84         8.81 
TCGA-49-4510 TCGA-49-4512 TCGA-49-4514 TCGA-49-6742 TCGA-49-6743 TCGA-49-6744 
       29.46        29.75        43.20        15.02        12.13        12.99 
TCGA-49-6745 TCGA-50-5044 TCGA-50-5045 TCGA-50-5049 TCGA-50-5051 TCGA-50-5055 
        4.93        20.48        71.47        48.82        14.96        25.81 
TCGA-50-5066 TCGA-50-5068 TCGA-50-5072 TCGA-50-5930 TCGA-50-5931 TCGA-50-5932 
        9.76        49.28         8.05         9.27         8.78        35.87 
TCGA-50-5933 TCGA-50-5935 TCGA-50-5936 TCGA-50-5939 TCGA-50-5941 TCGA-50-5942 
       77.88        21.47         8.45        15.12         9.37         4.44 
TCGA-50-5944 TCGA-50-5946 TCGA-50-6590 TCGA-50-6591 TCGA-50-6592 TCGA-50-6593 
       12.26        11.47        42.31         3.88        25.51        11.05 
TCGA-50-6594 TCGA-50-6595 TCGA-50-6597 TCGA-55-1592 TCGA-55-1594 TCGA-55-1595 
       12.16         6.21        33.37        23.05        38.73        48.62 
TCGA-55-1596 TCGA-55-5899 TCGA-55-6543 TCGA-55-6642 TCGA-55-6712 TCGA-64-1676 
       45.17         2.86         0.07        32.61         0.79        56.81 
TCGA-64-1677 TCGA-64-1678 TCGA-64-1680 TCGA-64-5774 TCGA-64-5775 TCGA-64-5778 
       20.65        39.09        37.02        83.84         0.10        30.44 
TCGA-64-5779 TCGA-64-5781 TCGA-64-5815 TCGA-67-3770 TCGA-67-3772 TCGA-67-3773 
       16.67        39.52         7.33         0.99         0.59         2.04 
TCGA-67-3774 TCGA-67-6215 TCGA-67-6216 TCGA-67-6217 TCGA-71-6725 TCGA-73-4658 
        0.59         0.89         0.69        13.87         2.01        52.57 
TCGA-73-4659 TCGA-73-4662 TCGA-73-4666 TCGA-73-4668 TCGA-73-4670 TCGA-73-4675 
       23.38        29.95        20.28        15.35         0.46         1.32 
TCGA-73-4676 TCGA-73-4677 TCGA-91-6828 TCGA-91-6829 TCGA-91-6831 TCGA-91-6835 
        4.01         1.25         1.22        41.33         1.28         1.15 
TCGA-91-6836 
        0.36 

  KRTAP15-1 MUTATED KRTAP15-1 WILD-TYPE 
               1.97                0.07 
  KRTAP15-1 MUTATED KRTAP15-1 WILD-TYPE 
              25.02               85.32 
  KRTAP15-1 MUTATED KRTAP15-1 WILD-TYPE 
               7.69               14.01 
[1] "2.0 - 25.0 (7.7)"  "0.1 - 85.3 (14.0)"
         TCGA-05-4249          TCGA-05-4250          TCGA-05-4382 
"KRTAP15-1 WILD-TYPE" "KRTAP15-1 WILD-TYPE" "KRTAP15-1 WILD-TYPE" 
         TCGA-05-4384          TCGA-05-4390          TCGA-05-4396 
"KRTAP15-1 WILD-TYPE" "KRTAP15-1 WILD-TYPE"   "KRTAP15-1 MUTATED" 
         TCGA-05-4397          TCGA-05-4398          TCGA-05-4402 
"KRTAP15-1 WILD-TYPE" "KRTAP15-1 WILD-TYPE" "KRTAP15-1 WILD-TYPE" 
         TCGA-05-4405          TCGA-05-4415          TCGA-05-4417 
"KRTAP15-1 WILD-TYPE" "KRTAP15-1 WILD-TYPE" "KRTAP15-1 WILD-TYPE" 
         TCGA-05-4418          TCGA-05-4420          TCGA-05-4424 
"KRTAP15-1 WILD-TYPE" "KRTAP15-1 WILD-TYPE" "KRTAP15-1 WILD-TYPE" 
         TCGA-05-4426          TCGA-05-4427          TCGA-05-4430 
"KRTAP15-1 WILD-TYPE" "KRTAP15-1 WILD-TYPE" "KRTAP15-1 WILD-TYPE" 
         TCGA-05-4432          TCGA-05-4433          TCGA-05-4434 
  "KRTAP15-1 MUTATED" "KRTAP15-1 WILD-TYPE" "KRTAP15-1 WILD-TYPE" 
         TCGA-05-5420          TCGA-05-5423          TCGA-05-5425 
"KRTAP15-1 WILD-TYPE" "KRTAP15-1 WILD-TYPE" "KRTAP15-1 WILD-TYPE" 
         TCGA-05-5429          TCGA-05-5715          TCGA-35-3615 
"KRTAP15-1 WILD-TYPE" "KRTAP15-1 WILD-TYPE" "KRTAP15-1 WILD-TYPE" 
         TCGA-35-4122          TCGA-35-4123          TCGA-35-5375 
"KRTAP15-1 WILD-TYPE" "KRTAP15-1 WILD-TYPE" "KRTAP15-1 WILD-TYPE" 
         TCGA-38-4625          TCGA-38-4626          TCGA-38-4627 
"KRTAP15-1 WILD-TYPE" "KRTAP15-1 WILD-TYPE" "KRTAP15-1 WILD-TYPE" 
         TCGA-38-4628          TCGA-38-4629          TCGA-38-4630 
"KRTAP15-1 WILD-TYPE" "KRTAP15-1 WILD-TYPE" "KRTAP15-1 WILD-TYPE" 
         TCGA-38-4631          TCGA-38-4632          TCGA-38-6178 
"KRTAP15-1 WILD-TYPE" "KRTAP15-1 WILD-TYPE" "KRTAP15-1 WILD-TYPE" 
         TCGA-44-2655          TCGA-44-2656          TCGA-44-2657 
"KRTAP15-1 WILD-TYPE" "KRTAP15-1 WILD-TYPE" "KRTAP15-1 WILD-TYPE" 
         TCGA-44-2659          TCGA-44-2661          TCGA-44-2662 
"KRTAP15-1 WILD-TYPE" "KRTAP15-1 WILD-TYPE" "KRTAP15-1 WILD-TYPE" 
         TCGA-44-2665          TCGA-44-2666          TCGA-44-2668 
"KRTAP15-1 WILD-TYPE" "KRTAP15-1 WILD-TYPE" "KRTAP15-1 WILD-TYPE" 
         TCGA-44-3396          TCGA-44-3398          TCGA-44-3918 
"KRTAP15-1 WILD-TYPE" "KRTAP15-1 WILD-TYPE" "KRTAP15-1 WILD-TYPE" 
         TCGA-44-3919          TCGA-44-4112          TCGA-44-5643 
"KRTAP15-1 WILD-TYPE" "KRTAP15-1 WILD-TYPE" "KRTAP15-1 WILD-TYPE" 
         TCGA-44-5645          TCGA-44-6144          TCGA-44-6145 
"KRTAP15-1 WILD-TYPE" "KRTAP15-1 WILD-TYPE" "KRTAP15-1 WILD-TYPE" 
         TCGA-44-6146          TCGA-44-6147          TCGA-44-6148 
"KRTAP15-1 WILD-TYPE" "KRTAP15-1 WILD-TYPE" "KRTAP15-1 WILD-TYPE" 
         TCGA-44-6774          TCGA-44-6775          TCGA-44-6776 
  "KRTAP15-1 MUTATED" "KRTAP15-1 WILD-TYPE" "KRTAP15-1 WILD-TYPE" 
         TCGA-44-6777          TCGA-44-6778          TCGA-44-6779 
"KRTAP15-1 WILD-TYPE" "KRTAP15-1 WILD-TYPE" "KRTAP15-1 WILD-TYPE" 
         TCGA-49-4486          TCGA-49-4487          TCGA-49-4488 
"KRTAP15-1 WILD-TYPE" "KRTAP15-1 WILD-TYPE" "KRTAP15-1 WILD-TYPE" 
         TCGA-49-4490          TCGA-49-4494          TCGA-49-4501 
"KRTAP15-1 WILD-TYPE" "KRTAP15-1 WILD-TYPE" "KRTAP15-1 WILD-TYPE" 
         TCGA-49-4505          TCGA-49-4506          TCGA-49-4507 
"KRTAP15-1 WILD-TYPE" "KRTAP15-1 WILD-TYPE" "KRTAP15-1 WILD-TYPE" 
         TCGA-49-4510          TCGA-49-4512          TCGA-49-4514 
"KRTAP15-1 WILD-TYPE" "KRTAP15-1 WILD-TYPE" "KRTAP15-1 WILD-TYPE" 
         TCGA-49-6742          TCGA-49-6743          TCGA-49-6744 
"KRTAP15-1 WILD-TYPE" "KRTAP15-1 WILD-TYPE" "KRTAP15-1 WILD-TYPE" 
         TCGA-49-6745          TCGA-50-5044          TCGA-50-5045 
"KRTAP15-1 WILD-TYPE" "KRTAP15-1 WILD-TYPE" "KRTAP15-1 WILD-TYPE" 
         TCGA-50-5049          TCGA-50-5051          TCGA-50-5055 
"KRTAP15-1 WILD-TYPE" "KRTAP15-1 WILD-TYPE" "KRTAP15-1 WILD-TYPE" 
         TCGA-50-5066          TCGA-50-5068          TCGA-50-5072 
"KRTAP15-1 WILD-TYPE" "KRTAP15-1 WILD-TYPE" "KRTAP15-1 WILD-TYPE" 
         TCGA-50-5930          TCGA-50-5931          TCGA-50-5932 
"KRTAP15-1 WILD-TYPE" "KRTAP15-1 WILD-TYPE" "KRTAP15-1 WILD-TYPE" 
         TCGA-50-5933          TCGA-50-5935          TCGA-50-5936 
"KRTAP15-1 WILD-TYPE" "KRTAP15-1 WILD-TYPE" "KRTAP15-1 WILD-TYPE" 
         TCGA-50-5939          TCGA-50-5941          TCGA-50-5942 
"KRTAP15-1 WILD-TYPE" "KRTAP15-1 WILD-TYPE" "KRTAP15-1 WILD-TYPE" 
         TCGA-50-5944          TCGA-50-5946          TCGA-50-6590 
"KRTAP15-1 WILD-TYPE" "KRTAP15-1 WILD-TYPE" "KRTAP15-1 WILD-TYPE" 
         TCGA-50-6591          TCGA-50-6592          TCGA-50-6593 
"KRTAP15-1 WILD-TYPE" "KRTAP15-1 WILD-TYPE" "KRTAP15-1 WILD-TYPE" 
         TCGA-50-6594          TCGA-50-6595          TCGA-50-6597 
"KRTAP15-1 WILD-TYPE" "KRTAP15-1 WILD-TYPE" "KRTAP15-1 WILD-TYPE" 
         TCGA-55-1592          TCGA-55-1594          TCGA-55-1595 
"KRTAP15-1 WILD-TYPE" "KRTAP15-1 WILD-TYPE" "KRTAP15-1 WILD-TYPE" 
         TCGA-55-1596          TCGA-55-5899          TCGA-55-6543 
"KRTAP15-1 WILD-TYPE" "KRTAP15-1 WILD-TYPE" "KRTAP15-1 WILD-TYPE" 
         TCGA-55-6642          TCGA-55-6712          TCGA-64-1676 
"KRTAP15-1 WILD-TYPE" "KRTAP15-1 WILD-TYPE" "KRTAP15-1 WILD-TYPE" 
         TCGA-64-1677          TCGA-64-1678          TCGA-64-1680 
"KRTAP15-1 WILD-TYPE" "KRTAP15-1 WILD-TYPE" "KRTAP15-1 WILD-TYPE" 
         TCGA-64-5774          TCGA-64-5775          TCGA-64-5778 
"KRTAP15-1 WILD-TYPE" "KRTAP15-1 WILD-TYPE" "KRTAP15-1 WILD-TYPE" 
         TCGA-64-5779          TCGA-64-5781          TCGA-64-5815 
"KRTAP15-1 WILD-TYPE" "KRTAP15-1 WILD-TYPE" "KRTAP15-1 WILD-TYPE" 
         TCGA-67-3770          TCGA-67-3771          TCGA-67-3772 
"KRTAP15-1 WILD-TYPE"   "KRTAP15-1 MUTATED" "KRTAP15-1 WILD-TYPE" 
         TCGA-67-3773          TCGA-67-3774          TCGA-67-6215 
"KRTAP15-1 WILD-TYPE" "KRTAP15-1 WILD-TYPE" "KRTAP15-1 WILD-TYPE" 
         TCGA-67-6216          TCGA-67-6217          TCGA-71-6725 
"KRTAP15-1 WILD-TYPE" "KRTAP15-1 WILD-TYPE" "KRTAP15-1 WILD-TYPE" 
         TCGA-73-4658          TCGA-73-4659          TCGA-73-4662 
"KRTAP15-1 WILD-TYPE" "KRTAP15-1 WILD-TYPE" "KRTAP15-1 WILD-TYPE" 
         TCGA-73-4666          TCGA-73-4668          TCGA-73-4670 
"KRTAP15-1 WILD-TYPE" "KRTAP15-1 WILD-TYPE" "KRTAP15-1 WILD-TYPE" 
         TCGA-73-4675          TCGA-73-4676          TCGA-73-4677 
"KRTAP15-1 WILD-TYPE" "KRTAP15-1 WILD-TYPE" "KRTAP15-1 WILD-TYPE" 
         TCGA-91-6828          TCGA-91-6829          TCGA-91-6831 
"KRTAP15-1 WILD-TYPE" "KRTAP15-1 WILD-TYPE" "KRTAP15-1 WILD-TYPE" 
         TCGA-91-6835          TCGA-91-6836 
"KRTAP15-1 WILD-TYPE" "KRTAP15-1 WILD-TYPE" 
         TCGA-05-4249          TCGA-05-4250          TCGA-05-4382 
"KRTAP15-1 WILD-TYPE" "KRTAP15-1 WILD-TYPE" "KRTAP15-1 WILD-TYPE" 
         TCGA-05-4384          TCGA-05-4390          TCGA-05-4396 
"KRTAP15-1 WILD-TYPE" "KRTAP15-1 WILD-TYPE"   "KRTAP15-1 MUTATED" 
         TCGA-05-4397          TCGA-05-4398          TCGA-05-4402 
"KRTAP15-1 WILD-TYPE" "KRTAP15-1 WILD-TYPE" "KRTAP15-1 WILD-TYPE" 
         TCGA-05-4405          TCGA-05-4415          TCGA-05-4417 
"KRTAP15-1 WILD-TYPE" "KRTAP15-1 WILD-TYPE" "KRTAP15-1 WILD-TYPE" 
         TCGA-05-4418          TCGA-05-4420          TCGA-05-4424 
"KRTAP15-1 WILD-TYPE" "KRTAP15-1 WILD-TYPE" "KRTAP15-1 WILD-TYPE" 
         TCGA-05-4426          TCGA-05-4427          TCGA-05-4430 
"KRTAP15-1 WILD-TYPE" "KRTAP15-1 WILD-TYPE" "KRTAP15-1 WILD-TYPE" 
         TCGA-05-4432          TCGA-05-4433          TCGA-05-4434 
  "KRTAP15-1 MUTATED" "KRTAP15-1 WILD-TYPE" "KRTAP15-1 WILD-TYPE" 
         TCGA-05-5420          TCGA-05-5423          TCGA-05-5425 
"KRTAP15-1 WILD-TYPE" "KRTAP15-1 WILD-TYPE" "KRTAP15-1 WILD-TYPE" 
         TCGA-05-5429          TCGA-05-5715          TCGA-35-3615 
"KRTAP15-1 WILD-TYPE" "KRTAP15-1 WILD-TYPE" "KRTAP15-1 WILD-TYPE" 
         TCGA-35-4122          TCGA-35-4123          TCGA-35-5375 
"KRTAP15-1 WILD-TYPE" "KRTAP15-1 WILD-TYPE" "KRTAP15-1 WILD-TYPE" 
         TCGA-38-4625          TCGA-38-4626          TCGA-38-4627 
"KRTAP15-1 WILD-TYPE" "KRTAP15-1 WILD-TYPE" "KRTAP15-1 WILD-TYPE" 
         TCGA-38-4628          TCGA-38-4629          TCGA-38-4630 
"KRTAP15-1 WILD-TYPE" "KRTAP15-1 WILD-TYPE" "KRTAP15-1 WILD-TYPE" 
         TCGA-38-4631          TCGA-38-4632          TCGA-38-6178 
"KRTAP15-1 WILD-TYPE" "KRTAP15-1 WILD-TYPE" "KRTAP15-1 WILD-TYPE" 
         TCGA-44-2655          TCGA-44-2656          TCGA-44-2657 
"KRTAP15-1 WILD-TYPE" "KRTAP15-1 WILD-TYPE" "KRTAP15-1 WILD-TYPE" 
         TCGA-44-2659          TCGA-44-2661          TCGA-44-2662 
"KRTAP15-1 WILD-TYPE" "KRTAP15-1 WILD-TYPE" "KRTAP15-1 WILD-TYPE" 
         TCGA-44-2665          TCGA-44-2666          TCGA-44-2668 
"KRTAP15-1 WILD-TYPE" "KRTAP15-1 WILD-TYPE" "KRTAP15-1 WILD-TYPE" 
         TCGA-44-3396          TCGA-44-3398          TCGA-44-3918 
"KRTAP15-1 WILD-TYPE" "KRTAP15-1 WILD-TYPE" "KRTAP15-1 WILD-TYPE" 
         TCGA-44-3919          TCGA-44-4112          TCGA-44-5643 
"KRTAP15-1 WILD-TYPE" "KRTAP15-1 WILD-TYPE" "KRTAP15-1 WILD-TYPE" 
         TCGA-44-5645          TCGA-44-6144          TCGA-44-6145 
"KRTAP15-1 WILD-TYPE" "KRTAP15-1 WILD-TYPE" "KRTAP15-1 WILD-TYPE" 
         TCGA-44-6146          TCGA-44-6147          TCGA-44-6148 
"KRTAP15-1 WILD-TYPE" "KRTAP15-1 WILD-TYPE" "KRTAP15-1 WILD-TYPE" 
         TCGA-44-6774          TCGA-44-6775          TCGA-44-6776 
  "KRTAP15-1 MUTATED" "KRTAP15-1 WILD-TYPE" "KRTAP15-1 WILD-TYPE" 
         TCGA-44-6777          TCGA-44-6778          TCGA-44-6779 
"KRTAP15-1 WILD-TYPE" "KRTAP15-1 WILD-TYPE" "KRTAP15-1 WILD-TYPE" 
         TCGA-49-4486          TCGA-49-4487          TCGA-49-4488 
"KRTAP15-1 WILD-TYPE" "KRTAP15-1 WILD-TYPE" "KRTAP15-1 WILD-TYPE" 
         TCGA-49-4490          TCGA-49-4494          TCGA-49-4501 
"KRTAP15-1 WILD-TYPE" "KRTAP15-1 WILD-TYPE" "KRTAP15-1 WILD-TYPE" 
         TCGA-49-4505          TCGA-49-4506          TCGA-49-4507 
"KRTAP15-1 WILD-TYPE" "KRTAP15-1 WILD-TYPE" "KRTAP15-1 WILD-TYPE" 
         TCGA-49-4510          TCGA-49-4512          TCGA-49-4514 
"KRTAP15-1 WILD-TYPE" "KRTAP15-1 WILD-TYPE" "KRTAP15-1 WILD-TYPE" 
         TCGA-49-6742          TCGA-49-6743          TCGA-49-6744 
"KRTAP15-1 WILD-TYPE" "KRTAP15-1 WILD-TYPE" "KRTAP15-1 WILD-TYPE" 
         TCGA-49-6745          TCGA-50-5044          TCGA-50-5045 
"KRTAP15-1 WILD-TYPE" "KRTAP15-1 WILD-TYPE" "KRTAP15-1 WILD-TYPE" 
         TCGA-50-5049          TCGA-50-5051          TCGA-50-5055 
"KRTAP15-1 WILD-TYPE" "KRTAP15-1 WILD-TYPE" "KRTAP15-1 WILD-TYPE" 
         TCGA-50-5066          TCGA-50-5068          TCGA-50-5072 
"KRTAP15-1 WILD-TYPE" "KRTAP15-1 WILD-TYPE" "KRTAP15-1 WILD-TYPE" 
         TCGA-50-5930          TCGA-50-5931          TCGA-50-5932 
"KRTAP15-1 WILD-TYPE" "KRTAP15-1 WILD-TYPE" "KRTAP15-1 WILD-TYPE" 
         TCGA-50-5933          TCGA-50-5935          TCGA-50-5936 
"KRTAP15-1 WILD-TYPE" "KRTAP15-1 WILD-TYPE" "KRTAP15-1 WILD-TYPE" 
         TCGA-50-5939          TCGA-50-5941          TCGA-50-5942 
"KRTAP15-1 WILD-TYPE" "KRTAP15-1 WILD-TYPE" "KRTAP15-1 WILD-TYPE" 
         TCGA-50-5944          TCGA-50-5946          TCGA-50-6590 
"KRTAP15-1 WILD-TYPE" "KRTAP15-1 WILD-TYPE" "KRTAP15-1 WILD-TYPE" 
         TCGA-50-6591          TCGA-50-6592          TCGA-50-6593 
"KRTAP15-1 WILD-TYPE" "KRTAP15-1 WILD-TYPE" "KRTAP15-1 WILD-TYPE" 
         TCGA-50-6594          TCGA-50-6595          TCGA-50-6597 
"KRTAP15-1 WILD-TYPE" "KRTAP15-1 WILD-TYPE" "KRTAP15-1 WILD-TYPE" 
         TCGA-55-1592          TCGA-55-1594          TCGA-55-1595 
"KRTAP15-1 WILD-TYPE" "KRTAP15-1 WILD-TYPE" "KRTAP15-1 WILD-TYPE" 
         TCGA-55-1596          TCGA-55-5899          TCGA-55-6543 
"KRTAP15-1 WILD-TYPE" "KRTAP15-1 WILD-TYPE" "KRTAP15-1 WILD-TYPE" 
         TCGA-55-6642          TCGA-55-6712          TCGA-64-1676 
"KRTAP15-1 WILD-TYPE" "KRTAP15-1 WILD-TYPE" "KRTAP15-1 WILD-TYPE" 
         TCGA-64-1677          TCGA-64-1678          TCGA-64-1680 
"KRTAP15-1 WILD-TYPE" "KRTAP15-1 WILD-TYPE" "KRTAP15-1 WILD-TYPE" 
         TCGA-64-5774          TCGA-64-5775          TCGA-64-5778 
"KRTAP15-1 WILD-TYPE" "KRTAP15-1 WILD-TYPE" "KRTAP15-1 WILD-TYPE" 
         TCGA-64-5779          TCGA-64-5781          TCGA-64-5815 
"KRTAP15-1 WILD-TYPE" "KRTAP15-1 WILD-TYPE" "KRTAP15-1 WILD-TYPE" 
         TCGA-67-3770          TCGA-67-3771          TCGA-67-3772 
"KRTAP15-1 WILD-TYPE"   "KRTAP15-1 MUTATED" "KRTAP15-1 WILD-TYPE" 
         TCGA-67-3773          TCGA-67-3774          TCGA-67-6215 
"KRTAP15-1 WILD-TYPE" "KRTAP15-1 WILD-TYPE" "KRTAP15-1 WILD-TYPE" 
         TCGA-67-6216          TCGA-67-6217          TCGA-71-6725 
"KRTAP15-1 WILD-TYPE" "KRTAP15-1 WILD-TYPE" "KRTAP15-1 WILD-TYPE" 
         TCGA-73-4658          TCGA-73-4659          TCGA-73-4662 
"KRTAP15-1 WILD-TYPE" "KRTAP15-1 WILD-TYPE" "KRTAP15-1 WILD-TYPE" 
         TCGA-73-4666          TCGA-73-4668          TCGA-73-4670 
"KRTAP15-1 WILD-TYPE" "KRTAP15-1 WILD-TYPE" "KRTAP15-1 WILD-TYPE" 
         TCGA-73-4675          TCGA-73-4676          TCGA-73-4677 
"KRTAP15-1 WILD-TYPE" "KRTAP15-1 WILD-TYPE" "KRTAP15-1 WILD-TYPE" 
         TCGA-91-6828          TCGA-91-6829          TCGA-91-6831 
"KRTAP15-1 WILD-TYPE" "KRTAP15-1 WILD-TYPE" "KRTAP15-1 WILD-TYPE" 
         TCGA-91-6835          TCGA-91-6836 
"KRTAP15-1 WILD-TYPE" "KRTAP15-1 WILD-TYPE" 
         TCGA-05-4249          TCGA-05-4250          TCGA-05-4382 
"KRTAP15-1 WILD-TYPE" "KRTAP15-1 WILD-TYPE" "KRTAP15-1 WILD-TYPE" 
         TCGA-05-4384          TCGA-05-4390          TCGA-05-4396 
"KRTAP15-1 WILD-TYPE" "KRTAP15-1 WILD-TYPE"   "KRTAP15-1 MUTATED" 
         TCGA-05-4397          TCGA-05-4398          TCGA-05-4402 
"KRTAP15-1 WILD-TYPE" "KRTAP15-1 WILD-TYPE" "KRTAP15-1 WILD-TYPE" 
         TCGA-05-4405          TCGA-05-4415          TCGA-05-4417 
"KRTAP15-1 WILD-TYPE" "KRTAP15-1 WILD-TYPE" "KRTAP15-1 WILD-TYPE" 
         TCGA-05-4418          TCGA-05-4420          TCGA-05-4424 
"KRTAP15-1 WILD-TYPE" "KRTAP15-1 WILD-TYPE" "KRTAP15-1 WILD-TYPE" 
         TCGA-05-4426          TCGA-05-4427          TCGA-05-4430 
"KRTAP15-1 WILD-TYPE" "KRTAP15-1 WILD-TYPE" "KRTAP15-1 WILD-TYPE" 
         TCGA-05-4432          TCGA-05-4433          TCGA-05-4434 
  "KRTAP15-1 MUTATED" "KRTAP15-1 WILD-TYPE" "KRTAP15-1 WILD-TYPE" 
         TCGA-05-5420          TCGA-05-5423          TCGA-05-5425 
"KRTAP15-1 WILD-TYPE" "KRTAP15-1 WILD-TYPE" "KRTAP15-1 WILD-TYPE" 
         TCGA-05-5429          TCGA-05-5715          TCGA-35-3615 
"KRTAP15-1 WILD-TYPE" "KRTAP15-1 WILD-TYPE" "KRTAP15-1 WILD-TYPE" 
         TCGA-35-4122          TCGA-35-4123          TCGA-35-5375 
"KRTAP15-1 WILD-TYPE" "KRTAP15-1 WILD-TYPE" "KRTAP15-1 WILD-TYPE" 
         TCGA-38-4625          TCGA-38-4626          TCGA-38-4627 
"KRTAP15-1 WILD-TYPE" "KRTAP15-1 WILD-TYPE" "KRTAP15-1 WILD-TYPE" 
         TCGA-38-4628          TCGA-38-4629          TCGA-38-4630 
"KRTAP15-1 WILD-TYPE" "KRTAP15-1 WILD-TYPE" "KRTAP15-1 WILD-TYPE" 
         TCGA-38-4631          TCGA-38-4632          TCGA-38-6178 
"KRTAP15-1 WILD-TYPE" "KRTAP15-1 WILD-TYPE" "KRTAP15-1 WILD-TYPE" 
         TCGA-44-2655          TCGA-44-2656          TCGA-44-2657 
"KRTAP15-1 WILD-TYPE" "KRTAP15-1 WILD-TYPE" "KRTAP15-1 WILD-TYPE" 
         TCGA-44-2659          TCGA-44-2661          TCGA-44-2662 
"KRTAP15-1 WILD-TYPE" "KRTAP15-1 WILD-TYPE" "KRTAP15-1 WILD-TYPE" 
         TCGA-44-2665          TCGA-44-2666          TCGA-44-2668 
"KRTAP15-1 WILD-TYPE" "KRTAP15-1 WILD-TYPE" "KRTAP15-1 WILD-TYPE" 
         TCGA-44-3396          TCGA-44-3398          TCGA-44-3918 
"KRTAP15-1 WILD-TYPE" "KRTAP15-1 WILD-TYPE" "KRTAP15-1 WILD-TYPE" 
         TCGA-44-3919          TCGA-44-4112          TCGA-44-5643 
"KRTAP15-1 WILD-TYPE" "KRTAP15-1 WILD-TYPE" "KRTAP15-1 WILD-TYPE" 
         TCGA-44-5645          TCGA-44-6144          TCGA-44-6145 
"KRTAP15-1 WILD-TYPE" "KRTAP15-1 WILD-TYPE" "KRTAP15-1 WILD-TYPE" 
         TCGA-44-6146          TCGA-44-6147          TCGA-44-6148 
"KRTAP15-1 WILD-TYPE" "KRTAP15-1 WILD-TYPE" "KRTAP15-1 WILD-TYPE" 
         TCGA-44-6774          TCGA-44-6775          TCGA-44-6776 
  "KRTAP15-1 MUTATED" "KRTAP15-1 WILD-TYPE" "KRTAP15-1 WILD-TYPE" 
         TCGA-44-6777          TCGA-44-6778          TCGA-44-6779 
"KRTAP15-1 WILD-TYPE" "KRTAP15-1 WILD-TYPE" "KRTAP15-1 WILD-TYPE" 
         TCGA-49-4486          TCGA-49-4487          TCGA-49-4488 
"KRTAP15-1 WILD-TYPE" "KRTAP15-1 WILD-TYPE" "KRTAP15-1 WILD-TYPE" 
         TCGA-49-4490          TCGA-49-4494          TCGA-49-4501 
"KRTAP15-1 WILD-TYPE" "KRTAP15-1 WILD-TYPE" "KRTAP15-1 WILD-TYPE" 
         TCGA-49-4505          TCGA-49-4506          TCGA-49-4507 
"KRTAP15-1 WILD-TYPE" "KRTAP15-1 WILD-TYPE" "KRTAP15-1 WILD-TYPE" 
         TCGA-49-4510          TCGA-49-4512          TCGA-49-4514 
"KRTAP15-1 WILD-TYPE" "KRTAP15-1 WILD-TYPE" "KRTAP15-1 WILD-TYPE" 
         TCGA-49-6742          TCGA-49-6743          TCGA-49-6744 
"KRTAP15-1 WILD-TYPE" "KRTAP15-1 WILD-TYPE" "KRTAP15-1 WILD-TYPE" 
         TCGA-49-6745          TCGA-50-5044          TCGA-50-5045 
"KRTAP15-1 WILD-TYPE" "KRTAP15-1 WILD-TYPE" "KRTAP15-1 WILD-TYPE" 
         TCGA-50-5049          TCGA-50-5051          TCGA-50-5055 
"KRTAP15-1 WILD-TYPE" "KRTAP15-1 WILD-TYPE" "KRTAP15-1 WILD-TYPE" 
         TCGA-50-5066          TCGA-50-5068          TCGA-50-5072 
"KRTAP15-1 WILD-TYPE" "KRTAP15-1 WILD-TYPE" "KRTAP15-1 WILD-TYPE" 
         TCGA-50-5930          TCGA-50-5931          TCGA-50-5932 
"KRTAP15-1 WILD-TYPE" "KRTAP15-1 WILD-TYPE" "KRTAP15-1 WILD-TYPE" 
         TCGA-50-5933          TCGA-50-5935          TCGA-50-5936 
"KRTAP15-1 WILD-TYPE" "KRTAP15-1 WILD-TYPE" "KRTAP15-1 WILD-TYPE" 
         TCGA-50-5939          TCGA-50-5941          TCGA-50-5942 
"KRTAP15-1 WILD-TYPE" "KRTAP15-1 WILD-TYPE" "KRTAP15-1 WILD-TYPE" 
         TCGA-50-5944          TCGA-50-5946          TCGA-50-6590 
"KRTAP15-1 WILD-TYPE" "KRTAP15-1 WILD-TYPE" "KRTAP15-1 WILD-TYPE" 
         TCGA-50-6591          TCGA-50-6592          TCGA-50-6593 
"KRTAP15-1 WILD-TYPE" "KRTAP15-1 WILD-TYPE" "KRTAP15-1 WILD-TYPE" 
         TCGA-50-6594          TCGA-50-6595          TCGA-50-6597 
"KRTAP15-1 WILD-TYPE" "KRTAP15-1 WILD-TYPE" "KRTAP15-1 WILD-TYPE" 
         TCGA-55-1592          TCGA-55-1594          TCGA-55-1595 
"KRTAP15-1 WILD-TYPE" "KRTAP15-1 WILD-TYPE" "KRTAP15-1 WILD-TYPE" 
         TCGA-55-1596          TCGA-55-5899          TCGA-55-6543 
"KRTAP15-1 WILD-TYPE" "KRTAP15-1 WILD-TYPE" "KRTAP15-1 WILD-TYPE" 
         TCGA-55-6642          TCGA-55-6712          TCGA-64-1676 
"KRTAP15-1 WILD-TYPE" "KRTAP15-1 WILD-TYPE" "KRTAP15-1 WILD-TYPE" 
         TCGA-64-1677          TCGA-64-1678          TCGA-64-1680 
"KRTAP15-1 WILD-TYPE" "KRTAP15-1 WILD-TYPE" "KRTAP15-1 WILD-TYPE" 
         TCGA-64-5774          TCGA-64-5775          TCGA-64-5778 
"KRTAP15-1 WILD-TYPE" "KRTAP15-1 WILD-TYPE" "KRTAP15-1 WILD-TYPE" 
         TCGA-64-5779          TCGA-64-5781          TCGA-64-5815 
"KRTAP15-1 WILD-TYPE" "KRTAP15-1 WILD-TYPE" "KRTAP15-1 WILD-TYPE" 
         TCGA-67-3770          TCGA-67-3771          TCGA-67-3772 
"KRTAP15-1 WILD-TYPE"   "KRTAP15-1 MUTATED" "KRTAP15-1 WILD-TYPE" 
         TCGA-67-3773          TCGA-67-3774          TCGA-67-6215 
"KRTAP15-1 WILD-TYPE" "KRTAP15-1 WILD-TYPE" "KRTAP15-1 WILD-TYPE" 
         TCGA-67-6216          TCGA-67-6217          TCGA-71-6725 
"KRTAP15-1 WILD-TYPE" "KRTAP15-1 WILD-TYPE" "KRTAP15-1 WILD-TYPE" 
         TCGA-73-4658          TCGA-73-4659          TCGA-73-4662 
"KRTAP15-1 WILD-TYPE" "KRTAP15-1 WILD-TYPE" "KRTAP15-1 WILD-TYPE" 
         TCGA-73-4666          TCGA-73-4668          TCGA-73-4670 
"KRTAP15-1 WILD-TYPE" "KRTAP15-1 WILD-TYPE" "KRTAP15-1 WILD-TYPE" 
         TCGA-73-4675          TCGA-73-4676          TCGA-73-4677 
"KRTAP15-1 WILD-TYPE" "KRTAP15-1 WILD-TYPE" "KRTAP15-1 WILD-TYPE" 
         TCGA-91-6828          TCGA-91-6829          TCGA-91-6831 
"KRTAP15-1 WILD-TYPE" "KRTAP15-1 WILD-TYPE" "KRTAP15-1 WILD-TYPE" 
         TCGA-91-6835          TCGA-91-6836 
"KRTAP15-1 WILD-TYPE" "KRTAP15-1 WILD-TYPE" 
[1] "hr=" "1.9"
D63V2, continuous
D63V3, binary
[1] "tbl2"
                     cls
clus                  [,1] [,2]
  KRTAP15-1 MUTATED      2    3
  KRTAP15-1 WILD-TYPE   91   76
        clus
vv       KRTAP15-1 MUTATED KRTAP15-1 WILD-TYPE
  FEMALE                 2                  91
  MALE                   3                  76
D63V4, continuous
D63V5, multiclass
D63V6, multiclass
    clus
vv   KRTAP15-1 MUTATED KRTAP15-1 WILD-TYPE
  T1                 3                  38
  T2                 1                 107
  T3                 0                  14
  T4                 1                   7
D63V7, multiclass
       clus
vv      KRTAP15-1 MUTATED KRTAP15-1 WILD-TYPE
  N0                    2                  93
  N1                    2                  35
  N2+N3                 1                  34
D63V8, multiclass
    clus
vv   KRTAP15-1 MUTATED KRTAP15-1 WILD-TYPE
  M0                 5                 132
  M1                 0                   9
  MX                 0                  22
D63V9, multiclass
     clus
vv    KRTAP15-1 MUTATED KRTAP15-1 WILD-TYPE
  I                   2                  86
  II                  1                  32
  III                 2                  37
  IV                  0                   9
D63V10, binary
[1] "tbl2"
                     cls
clus                  [,1] [,2]
  KRTAP15-1 MUTATED      0    5
  KRTAP15-1 WILD-TYPE   16  151
     clus
vv    KRTAP15-1 MUTATED KRTAP15-1 WILD-TYPE
  NO                  0                  16
  YES                 5                 151
D63V11, continuous
D63V12, continuous
[1] "Remove cluster labels:" "KRTAP15-1 MUTATED"     
clus
  KRTAP15-1 MUTATED KRTAP15-1 WILD-TYPE 
                  1                  81 
         TCGA-05-4384          TCGA-05-4390          TCGA-05-4403 
"KRTAP15-1 WILD-TYPE" "KRTAP15-1 WILD-TYPE" "KRTAP15-1 WILD-TYPE" 
         TCGA-05-4405          TCGA-05-4410          TCGA-05-4415 
"KRTAP15-1 WILD-TYPE" "KRTAP15-1 WILD-TYPE" "KRTAP15-1 WILD-TYPE" 
         TCGA-05-4417          TCGA-05-4424          TCGA-05-4427 
"KRTAP15-1 WILD-TYPE" "KRTAP15-1 WILD-TYPE" "KRTAP15-1 WILD-TYPE" 
         TCGA-05-4433          TCGA-05-5420          TCGA-05-5423 
"KRTAP15-1 WILD-TYPE" "KRTAP15-1 WILD-TYPE" "KRTAP15-1 WILD-TYPE" 
         TCGA-05-5425          TCGA-05-5428          TCGA-35-4122 
"KRTAP15-1 WILD-TYPE" "KRTAP15-1 WILD-TYPE" "KRTAP15-1 WILD-TYPE" 
         TCGA-35-4123          TCGA-35-5375          TCGA-38-4629 
"KRTAP15-1 WILD-TYPE" "KRTAP15-1 WILD-TYPE" "KRTAP15-1 WILD-TYPE" 
         TCGA-38-4632          TCGA-44-2655          TCGA-44-2656 
"KRTAP15-1 WILD-TYPE" "KRTAP15-1 WILD-TYPE" "KRTAP15-1 WILD-TYPE" 
         TCGA-44-2657          TCGA-44-2659          TCGA-44-2662 
"KRTAP15-1 WILD-TYPE" "KRTAP15-1 WILD-TYPE" "KRTAP15-1 WILD-TYPE" 
         TCGA-44-2668          TCGA-44-3398          TCGA-44-3918 
"KRTAP15-1 WILD-TYPE" "KRTAP15-1 WILD-TYPE" "KRTAP15-1 WILD-TYPE" 
         TCGA-44-4112          TCGA-44-5645          TCGA-44-6145 
"KRTAP15-1 WILD-TYPE" "KRTAP15-1 WILD-TYPE" "KRTAP15-1 WILD-TYPE" 
         TCGA-44-6146          TCGA-44-6147          TCGA-44-6148 
"KRTAP15-1 WILD-TYPE" "KRTAP15-1 WILD-TYPE" "KRTAP15-1 WILD-TYPE" 
         TCGA-44-6775          TCGA-44-6776          TCGA-44-6777 
"KRTAP15-1 WILD-TYPE" "KRTAP15-1 WILD-TYPE" "KRTAP15-1 WILD-TYPE" 
         TCGA-44-6778          TCGA-44-6779          TCGA-49-4486 
"KRTAP15-1 WILD-TYPE" "KRTAP15-1 WILD-TYPE" "KRTAP15-1 WILD-TYPE" 
         TCGA-49-4488          TCGA-49-4494          TCGA-49-4505 
"KRTAP15-1 WILD-TYPE" "KRTAP15-1 WILD-TYPE" "KRTAP15-1 WILD-TYPE" 
         TCGA-49-4507          TCGA-50-5051          TCGA-50-5072 
"KRTAP15-1 WILD-TYPE" "KRTAP15-1 WILD-TYPE" "KRTAP15-1 WILD-TYPE" 
         TCGA-50-5939          TCGA-50-5942          TCGA-50-5946 
"KRTAP15-1 WILD-TYPE" "KRTAP15-1 WILD-TYPE" "KRTAP15-1 WILD-TYPE" 
         TCGA-50-6590          TCGA-50-6594          TCGA-50-6595 
"KRTAP15-1 WILD-TYPE" "KRTAP15-1 WILD-TYPE" "KRTAP15-1 WILD-TYPE" 
         TCGA-55-1592          TCGA-55-1595          TCGA-55-6543 
"KRTAP15-1 WILD-TYPE" "KRTAP15-1 WILD-TYPE" "KRTAP15-1 WILD-TYPE" 
         TCGA-55-6712          TCGA-64-1678          TCGA-64-1680 
"KRTAP15-1 WILD-TYPE" "KRTAP15-1 WILD-TYPE" "KRTAP15-1 WILD-TYPE" 
         TCGA-64-5774          TCGA-64-5778          TCGA-64-5779 
"KRTAP15-1 WILD-TYPE" "KRTAP15-1 WILD-TYPE" "KRTAP15-1 WILD-TYPE" 
         TCGA-64-5781          TCGA-64-5815          TCGA-67-6217 
"KRTAP15-1 WILD-TYPE" "KRTAP15-1 WILD-TYPE" "KRTAP15-1 WILD-TYPE" 
         TCGA-73-4659          TCGA-73-4662          TCGA-73-4666 
"KRTAP15-1 WILD-TYPE" "KRTAP15-1 WILD-TYPE" "KRTAP15-1 WILD-TYPE" 
         TCGA-73-4668          TCGA-73-4670          TCGA-73-4675 
"KRTAP15-1 WILD-TYPE" "KRTAP15-1 WILD-TYPE" "KRTAP15-1 WILD-TYPE" 
         TCGA-73-4676          TCGA-73-4677          TCGA-75-5122 
"KRTAP15-1 WILD-TYPE" "KRTAP15-1 WILD-TYPE" "KRTAP15-1 WILD-TYPE" 
         TCGA-75-5125          TCGA-75-5126          TCGA-75-5146 
"KRTAP15-1 WILD-TYPE" "KRTAP15-1 WILD-TYPE" "KRTAP15-1 WILD-TYPE" 
         TCGA-75-6206          TCGA-75-6207          TCGA-80-5611 
"KRTAP15-1 WILD-TYPE" "KRTAP15-1 WILD-TYPE" "KRTAP15-1 WILD-TYPE" 
         TCGA-91-6828          TCGA-91-6829          TCGA-91-6835 
"KRTAP15-1 WILD-TYPE" "KRTAP15-1 WILD-TYPE" "KRTAP15-1 WILD-TYPE" 
D63V13, multiclass
                                             clus
vv                                            KRTAP15-1 MUTATED
  CURRENT REFORMED SMOKER FOR < OR = 15 YEARS                 1
  CURRENT REFORMED SMOKER FOR > 15 YEARS                      2
  CURRENT SMOKER                                              2
  LIFELONG NON-SMOKER                                         0
                                             clus
vv                                            KRTAP15-1 WILD-TYPE
  CURRENT REFORMED SMOKER FOR < OR = 15 YEARS                  61
  CURRENT REFORMED SMOKER FOR > 15 YEARS                       44
  CURRENT SMOKER                                               26
  LIFELONG NON-SMOKER                                          24
D63V14, continuous
[1] "Remove cluster labels:" "KRTAP15-1 MUTATED"     
clus
  KRTAP15-1 MUTATED KRTAP15-1 WILD-TYPE 
                  2                  66 
         TCGA-05-4384          TCGA-05-4390          TCGA-05-4405 
"KRTAP15-1 WILD-TYPE" "KRTAP15-1 WILD-TYPE" "KRTAP15-1 WILD-TYPE" 
         TCGA-05-4410          TCGA-05-4415          TCGA-05-4417 
"KRTAP15-1 WILD-TYPE" "KRTAP15-1 WILD-TYPE" "KRTAP15-1 WILD-TYPE" 
         TCGA-05-4424          TCGA-05-4427          TCGA-05-4433 
"KRTAP15-1 WILD-TYPE" "KRTAP15-1 WILD-TYPE" "KRTAP15-1 WILD-TYPE" 
         TCGA-05-5420          TCGA-05-5423          TCGA-05-5425 
"KRTAP15-1 WILD-TYPE" "KRTAP15-1 WILD-TYPE" "KRTAP15-1 WILD-TYPE" 
         TCGA-05-5428          TCGA-35-4122          TCGA-35-4123 
"KRTAP15-1 WILD-TYPE" "KRTAP15-1 WILD-TYPE" "KRTAP15-1 WILD-TYPE" 
         TCGA-35-5375          TCGA-38-4625          TCGA-38-4626 
"KRTAP15-1 WILD-TYPE" "KRTAP15-1 WILD-TYPE" "KRTAP15-1 WILD-TYPE" 
         TCGA-44-2655          TCGA-44-2656          TCGA-44-2657 
"KRTAP15-1 WILD-TYPE" "KRTAP15-1 WILD-TYPE" "KRTAP15-1 WILD-TYPE" 
         TCGA-44-2659          TCGA-44-2662          TCGA-44-2666 
"KRTAP15-1 WILD-TYPE" "KRTAP15-1 WILD-TYPE" "KRTAP15-1 WILD-TYPE" 
         TCGA-44-2668          TCGA-44-3396          TCGA-44-3398 
"KRTAP15-1 WILD-TYPE" "KRTAP15-1 WILD-TYPE" "KRTAP15-1 WILD-TYPE" 
         TCGA-44-3918          TCGA-44-4112          TCGA-44-5645 
"KRTAP15-1 WILD-TYPE" "KRTAP15-1 WILD-TYPE" "KRTAP15-1 WILD-TYPE" 
         TCGA-44-6144          TCGA-44-6145          TCGA-44-6147 
"KRTAP15-1 WILD-TYPE" "KRTAP15-1 WILD-TYPE" "KRTAP15-1 WILD-TYPE" 
         TCGA-44-6148          TCGA-44-6775          TCGA-44-6776 
"KRTAP15-1 WILD-TYPE" "KRTAP15-1 WILD-TYPE" "KRTAP15-1 WILD-TYPE" 
         TCGA-44-6777          TCGA-44-6778          TCGA-44-6779 
"KRTAP15-1 WILD-TYPE" "KRTAP15-1 WILD-TYPE" "KRTAP15-1 WILD-TYPE" 
         TCGA-49-4486          TCGA-49-4494          TCGA-49-4505 
"KRTAP15-1 WILD-TYPE" "KRTAP15-1 WILD-TYPE" "KRTAP15-1 WILD-TYPE" 
         TCGA-55-1592          TCGA-55-1594          TCGA-55-1595 
"KRTAP15-1 WILD-TYPE" "KRTAP15-1 WILD-TYPE" "KRTAP15-1 WILD-TYPE" 
         TCGA-55-1596          TCGA-55-5899          TCGA-55-6642 
"KRTAP15-1 WILD-TYPE" "KRTAP15-1 WILD-TYPE" "KRTAP15-1 WILD-TYPE" 
         TCGA-55-6712          TCGA-64-1677          TCGA-64-1678 
"KRTAP15-1 WILD-TYPE" "KRTAP15-1 WILD-TYPE" "KRTAP15-1 WILD-TYPE" 
         TCGA-64-1680          TCGA-64-5774          TCGA-64-5775 
"KRTAP15-1 WILD-TYPE" "KRTAP15-1 WILD-TYPE" "KRTAP15-1 WILD-TYPE" 
         TCGA-64-5778          TCGA-64-5779          TCGA-64-5781 
"KRTAP15-1 WILD-TYPE" "KRTAP15-1 WILD-TYPE" "KRTAP15-1 WILD-TYPE" 
         TCGA-73-4659          TCGA-73-4662          TCGA-73-4666 
"KRTAP15-1 WILD-TYPE" "KRTAP15-1 WILD-TYPE" "KRTAP15-1 WILD-TYPE" 
         TCGA-73-4668          TCGA-73-4670          TCGA-73-4675 
"KRTAP15-1 WILD-TYPE" "KRTAP15-1 WILD-TYPE" "KRTAP15-1 WILD-TYPE" 
         TCGA-73-4676          TCGA-91-6829          TCGA-91-6836 
"KRTAP15-1 WILD-TYPE" "KRTAP15-1 WILD-TYPE" "KRTAP15-1 WILD-TYPE" 

Clustering(64) Variable = SATB2 MUTATION ANALYSIS
D64V1, survival
                 sevent
clus2              0  1
  SATB2 MUTATED    9  4
  SATB2 WILD-TYPE 90 46
  SATB2 MUTATED SATB2 WILD-TYPE 
             13             136 
  SATB2 MUTATED SATB2 WILD-TYPE 
              4              46 
$`SATB2 MUTATED`
TCGA-05-4382 TCGA-05-4398 TCGA-05-4420 TCGA-38-4629 TCGA-44-3918 TCGA-44-6777 
       19.92        47.05        29.95        28.37         6.44        32.45 
TCGA-50-5045 TCGA-50-5066 TCGA-50-6594 TCGA-64-1676 TCGA-64-5815 TCGA-73-4670 
       71.47         9.76        12.16        56.81         7.33         0.46 
TCGA-91-6836 
        0.36 

$`SATB2 WILD-TYPE`
TCGA-05-4249 TCGA-05-4250 TCGA-05-4384 TCGA-05-4390 TCGA-05-4396 TCGA-05-4397 
       38.07         3.98        14.01        37.02         9.96        24.03 
TCGA-05-4402 TCGA-05-4405 TCGA-05-4415 TCGA-05-4417 TCGA-05-4418 TCGA-05-4424 
        8.02        20.05         2.96        14.93         8.98        30.02 
TCGA-05-4426 TCGA-05-4427 TCGA-05-4430 TCGA-05-4432 TCGA-05-4433 TCGA-05-4434 
       26.01        26.01        25.02        25.02        24.00        15.02 
TCGA-05-5420 TCGA-05-5423 TCGA-05-5425 TCGA-05-5429 TCGA-05-5715 TCGA-35-3615 
        1.02         4.96         2.96         0.99         2.04         0.46 
TCGA-35-4122 TCGA-35-4123 TCGA-35-5375 TCGA-38-4625 TCGA-38-4626 TCGA-38-4627 
        7.36         5.95         8.68        47.61        85.32        37.71 
TCGA-38-4628 TCGA-38-4630 TCGA-38-4631 TCGA-38-4632 TCGA-38-6178 TCGA-44-2655 
       49.02        35.28        11.64        44.61         5.19        18.87 
TCGA-44-2656 TCGA-44-2657 TCGA-44-2659 TCGA-44-2661 TCGA-44-2662 TCGA-44-2665 
       19.10        13.15        17.39         3.39        15.78        13.15 
TCGA-44-2666 TCGA-44-2668 TCGA-44-3396 TCGA-44-3398 TCGA-44-3919 TCGA-44-4112 
        3.19         8.09        10.22         8.32         6.21         4.60 
TCGA-44-5643 TCGA-44-5645 TCGA-44-6144 TCGA-44-6145 TCGA-44-6146 TCGA-44-6147 
        3.48         6.84         0.30         3.35         9.93         7.76 
TCGA-44-6148 TCGA-44-6774 TCGA-44-6775 TCGA-44-6776 TCGA-44-6778 TCGA-44-6779 
        3.12         5.42         2.70        63.72        36.49        16.41 
TCGA-49-4486 TCGA-49-4487 TCGA-49-4488 TCGA-49-4490 TCGA-49-4494 TCGA-49-4501 
       76.21        28.11        28.57        12.66        35.54        46.72 
TCGA-49-4505 TCGA-49-4506 TCGA-49-4507 TCGA-49-4510 TCGA-49-4512 TCGA-49-4514 
       14.07        32.84         8.81        29.46        29.75        43.20 
TCGA-49-6742 TCGA-49-6743 TCGA-49-6744 TCGA-49-6745 TCGA-50-5044 TCGA-50-5049 
       15.02        12.13        12.99         4.93        20.48        48.82 
TCGA-50-5051 TCGA-50-5055 TCGA-50-5068 TCGA-50-5072 TCGA-50-5930 TCGA-50-5931 
       14.96        25.81        49.28         8.05         9.27         8.78 
TCGA-50-5932 TCGA-50-5933 TCGA-50-5935 TCGA-50-5936 TCGA-50-5939 TCGA-50-5941 
       35.87        77.88        21.47         8.45        15.12         9.37 
TCGA-50-5942 TCGA-50-5944 TCGA-50-5946 TCGA-50-6590 TCGA-50-6591 TCGA-50-6592 
        4.44        12.26        11.47        42.31         3.88        25.51 
TCGA-50-6593 TCGA-50-6595 TCGA-50-6597 TCGA-55-1592 TCGA-55-1594 TCGA-55-1595 
       11.05         6.21        33.37        23.05        38.73        48.62 
TCGA-55-1596 TCGA-55-5899 TCGA-55-6543 TCGA-55-6642 TCGA-55-6712 TCGA-64-1677 
       45.17         2.86         0.07        32.61         0.79        20.65 
TCGA-64-1678 TCGA-64-1680 TCGA-64-5774 TCGA-64-5775 TCGA-64-5778 TCGA-64-5779 
       39.09        37.02        83.84         0.10        30.44        16.67 
TCGA-64-5781 TCGA-67-3770 TCGA-67-3771 TCGA-67-3772 TCGA-67-3773 TCGA-67-3774 
       39.52         0.99         1.97         0.59         2.04         0.59 
TCGA-67-6215 TCGA-67-6216 TCGA-67-6217 TCGA-71-6725 TCGA-73-4658 TCGA-73-4659 
        0.89         0.69        13.87         2.01        52.57        23.38 
TCGA-73-4662 TCGA-73-4666 TCGA-73-4668 TCGA-73-4675 TCGA-73-4676 TCGA-73-4677 
       29.95        20.28        15.35         1.32         4.01         1.25 
TCGA-91-6828 TCGA-91-6829 TCGA-91-6831 TCGA-91-6835 
        1.22        41.33         1.28         1.15 

  SATB2 MUTATED SATB2 WILD-TYPE 
           0.36            0.07 
  SATB2 MUTATED SATB2 WILD-TYPE 
          71.47           85.32 
  SATB2 MUTATED SATB2 WILD-TYPE 
          19.92           13.51 
[1] "0.4 - 71.5 (19.9)" "0.1 - 85.3 (13.5)"
     TCGA-05-4249      TCGA-05-4250      TCGA-05-4382      TCGA-05-4384 
"SATB2 WILD-TYPE" "SATB2 WILD-TYPE"   "SATB2 MUTATED" "SATB2 WILD-TYPE" 
     TCGA-05-4390      TCGA-05-4396      TCGA-05-4397      TCGA-05-4398 
"SATB2 WILD-TYPE" "SATB2 WILD-TYPE" "SATB2 WILD-TYPE"   "SATB2 MUTATED" 
     TCGA-05-4402      TCGA-05-4405      TCGA-05-4415      TCGA-05-4417 
"SATB2 WILD-TYPE" "SATB2 WILD-TYPE" "SATB2 WILD-TYPE" "SATB2 WILD-TYPE" 
     TCGA-05-4418      TCGA-05-4420      TCGA-05-4424      TCGA-05-4426 
"SATB2 WILD-TYPE"   "SATB2 MUTATED" "SATB2 WILD-TYPE" "SATB2 WILD-TYPE" 
     TCGA-05-4427      TCGA-05-4430      TCGA-05-4432      TCGA-05-4433 
"SATB2 WILD-TYPE" "SATB2 WILD-TYPE" "SATB2 WILD-TYPE" "SATB2 WILD-TYPE" 
     TCGA-05-4434      TCGA-05-5420      TCGA-05-5423      TCGA-05-5425 
"SATB2 WILD-TYPE" "SATB2 WILD-TYPE" "SATB2 WILD-TYPE" "SATB2 WILD-TYPE" 
     TCGA-05-5429      TCGA-05-5715      TCGA-35-3615      TCGA-35-4122 
"SATB2 WILD-TYPE" "SATB2 WILD-TYPE" "SATB2 WILD-TYPE" "SATB2 WILD-TYPE" 
     TCGA-35-4123      TCGA-35-5375      TCGA-38-4625      TCGA-38-4626 
"SATB2 WILD-TYPE" "SATB2 WILD-TYPE" "SATB2 WILD-TYPE" "SATB2 WILD-TYPE" 
     TCGA-38-4627      TCGA-38-4628      TCGA-38-4629      TCGA-38-4630 
"SATB2 WILD-TYPE" "SATB2 WILD-TYPE"   "SATB2 MUTATED" "SATB2 WILD-TYPE" 
     TCGA-38-4631      TCGA-38-4632      TCGA-38-6178      TCGA-44-2655 
"SATB2 WILD-TYPE" "SATB2 WILD-TYPE" "SATB2 WILD-TYPE" "SATB2 WILD-TYPE" 
     TCGA-44-2656      TCGA-44-2657      TCGA-44-2659      TCGA-44-2661 
"SATB2 WILD-TYPE" "SATB2 WILD-TYPE" "SATB2 WILD-TYPE" "SATB2 WILD-TYPE" 
     TCGA-44-2662      TCGA-44-2665      TCGA-44-2666      TCGA-44-2668 
"SATB2 WILD-TYPE" "SATB2 WILD-TYPE" "SATB2 WILD-TYPE" "SATB2 WILD-TYPE" 
     TCGA-44-3396      TCGA-44-3398      TCGA-44-3918      TCGA-44-3919 
"SATB2 WILD-TYPE" "SATB2 WILD-TYPE"   "SATB2 MUTATED" "SATB2 WILD-TYPE" 
     TCGA-44-4112      TCGA-44-5643      TCGA-44-5645      TCGA-44-6144 
"SATB2 WILD-TYPE" "SATB2 WILD-TYPE" "SATB2 WILD-TYPE" "SATB2 WILD-TYPE" 
     TCGA-44-6145      TCGA-44-6146      TCGA-44-6147      TCGA-44-6148 
"SATB2 WILD-TYPE" "SATB2 WILD-TYPE" "SATB2 WILD-TYPE" "SATB2 WILD-TYPE" 
     TCGA-44-6774      TCGA-44-6775      TCGA-44-6776      TCGA-44-6777 
"SATB2 WILD-TYPE" "SATB2 WILD-TYPE" "SATB2 WILD-TYPE"   "SATB2 MUTATED" 
     TCGA-44-6778      TCGA-44-6779      TCGA-49-4486      TCGA-49-4487 
"SATB2 WILD-TYPE" "SATB2 WILD-TYPE" "SATB2 WILD-TYPE" "SATB2 WILD-TYPE" 
     TCGA-49-4488      TCGA-49-4490      TCGA-49-4494      TCGA-49-4501 
"SATB2 WILD-TYPE" "SATB2 WILD-TYPE" "SATB2 WILD-TYPE" "SATB2 WILD-TYPE" 
     TCGA-49-4505      TCGA-49-4506      TCGA-49-4507      TCGA-49-4510 
"SATB2 WILD-TYPE" "SATB2 WILD-TYPE" "SATB2 WILD-TYPE" "SATB2 WILD-TYPE" 
     TCGA-49-4512      TCGA-49-4514      TCGA-49-6742      TCGA-49-6743 
"SATB2 WILD-TYPE" "SATB2 WILD-TYPE" "SATB2 WILD-TYPE" "SATB2 WILD-TYPE" 
     TCGA-49-6744      TCGA-49-6745      TCGA-50-5044      TCGA-50-5045 
"SATB2 WILD-TYPE" "SATB2 WILD-TYPE" "SATB2 WILD-TYPE"   "SATB2 MUTATED" 
     TCGA-50-5049      TCGA-50-5051      TCGA-50-5055      TCGA-50-5066 
"SATB2 WILD-TYPE" "SATB2 WILD-TYPE" "SATB2 WILD-TYPE"   "SATB2 MUTATED" 
     TCGA-50-5068      TCGA-50-5072      TCGA-50-5930      TCGA-50-5931 
"SATB2 WILD-TYPE" "SATB2 WILD-TYPE" "SATB2 WILD-TYPE" "SATB2 WILD-TYPE" 
     TCGA-50-5932      TCGA-50-5933      TCGA-50-5935      TCGA-50-5936 
"SATB2 WILD-TYPE" "SATB2 WILD-TYPE" "SATB2 WILD-TYPE" "SATB2 WILD-TYPE" 
     TCGA-50-5939      TCGA-50-5941      TCGA-50-5942      TCGA-50-5944 
"SATB2 WILD-TYPE" "SATB2 WILD-TYPE" "SATB2 WILD-TYPE" "SATB2 WILD-TYPE" 
     TCGA-50-5946      TCGA-50-6590      TCGA-50-6591      TCGA-50-6592 
"SATB2 WILD-TYPE" "SATB2 WILD-TYPE" "SATB2 WILD-TYPE" "SATB2 WILD-TYPE" 
     TCGA-50-6593      TCGA-50-6594      TCGA-50-6595      TCGA-50-6597 
"SATB2 WILD-TYPE"   "SATB2 MUTATED" "SATB2 WILD-TYPE" "SATB2 WILD-TYPE" 
     TCGA-55-1592      TCGA-55-1594      TCGA-55-1595      TCGA-55-1596 
"SATB2 WILD-TYPE" "SATB2 WILD-TYPE" "SATB2 WILD-TYPE" "SATB2 WILD-TYPE" 
     TCGA-55-5899      TCGA-55-6543      TCGA-55-6642      TCGA-55-6712 
"SATB2 WILD-TYPE" "SATB2 WILD-TYPE" "SATB2 WILD-TYPE" "SATB2 WILD-TYPE" 
     TCGA-64-1676      TCGA-64-1677      TCGA-64-1678      TCGA-64-1680 
  "SATB2 MUTATED" "SATB2 WILD-TYPE" "SATB2 WILD-TYPE" "SATB2 WILD-TYPE" 
     TCGA-64-5774      TCGA-64-5775      TCGA-64-5778      TCGA-64-5779 
"SATB2 WILD-TYPE" "SATB2 WILD-TYPE" "SATB2 WILD-TYPE" "SATB2 WILD-TYPE" 
     TCGA-64-5781      TCGA-64-5815      TCGA-67-3770      TCGA-67-3771 
"SATB2 WILD-TYPE"   "SATB2 MUTATED" "SATB2 WILD-TYPE" "SATB2 WILD-TYPE" 
     TCGA-67-3772      TCGA-67-3773      TCGA-67-3774      TCGA-67-6215 
"SATB2 WILD-TYPE" "SATB2 WILD-TYPE" "SATB2 WILD-TYPE" "SATB2 WILD-TYPE" 
     TCGA-67-6216      TCGA-67-6217      TCGA-71-6725      TCGA-73-4658 
"SATB2 WILD-TYPE" "SATB2 WILD-TYPE" "SATB2 WILD-TYPE" "SATB2 WILD-TYPE" 
     TCGA-73-4659      TCGA-73-4662      TCGA-73-4666      TCGA-73-4668 
"SATB2 WILD-TYPE" "SATB2 WILD-TYPE" "SATB2 WILD-TYPE" "SATB2 WILD-TYPE" 
     TCGA-73-4670      TCGA-73-4675      TCGA-73-4676      TCGA-73-4677 
  "SATB2 MUTATED" "SATB2 WILD-TYPE" "SATB2 WILD-TYPE" "SATB2 WILD-TYPE" 
     TCGA-91-6828      TCGA-91-6829      TCGA-91-6831      TCGA-91-6835 
"SATB2 WILD-TYPE" "SATB2 WILD-TYPE" "SATB2 WILD-TYPE" "SATB2 WILD-TYPE" 
     TCGA-91-6836 
  "SATB2 MUTATED" 
     TCGA-05-4249      TCGA-05-4250      TCGA-05-4382      TCGA-05-4384 
"SATB2 WILD-TYPE" "SATB2 WILD-TYPE"   "SATB2 MUTATED" "SATB2 WILD-TYPE" 
     TCGA-05-4390      TCGA-05-4396      TCGA-05-4397      TCGA-05-4398 
"SATB2 WILD-TYPE" "SATB2 WILD-TYPE" "SATB2 WILD-TYPE"   "SATB2 MUTATED" 
     TCGA-05-4402      TCGA-05-4405      TCGA-05-4415      TCGA-05-4417 
"SATB2 WILD-TYPE" "SATB2 WILD-TYPE" "SATB2 WILD-TYPE" "SATB2 WILD-TYPE" 
     TCGA-05-4418      TCGA-05-4420      TCGA-05-4424      TCGA-05-4426 
"SATB2 WILD-TYPE"   "SATB2 MUTATED" "SATB2 WILD-TYPE" "SATB2 WILD-TYPE" 
     TCGA-05-4427      TCGA-05-4430      TCGA-05-4432      TCGA-05-4433 
"SATB2 WILD-TYPE" "SATB2 WILD-TYPE" "SATB2 WILD-TYPE" "SATB2 WILD-TYPE" 
     TCGA-05-4434      TCGA-05-5420      TCGA-05-5423      TCGA-05-5425 
"SATB2 WILD-TYPE" "SATB2 WILD-TYPE" "SATB2 WILD-TYPE" "SATB2 WILD-TYPE" 
     TCGA-05-5429      TCGA-05-5715      TCGA-35-3615      TCGA-35-4122 
"SATB2 WILD-TYPE" "SATB2 WILD-TYPE" "SATB2 WILD-TYPE" "SATB2 WILD-TYPE" 
     TCGA-35-4123      TCGA-35-5375      TCGA-38-4625      TCGA-38-4626 
"SATB2 WILD-TYPE" "SATB2 WILD-TYPE" "SATB2 WILD-TYPE" "SATB2 WILD-TYPE" 
     TCGA-38-4627      TCGA-38-4628      TCGA-38-4629      TCGA-38-4630 
"SATB2 WILD-TYPE" "SATB2 WILD-TYPE"   "SATB2 MUTATED" "SATB2 WILD-TYPE" 
     TCGA-38-4631      TCGA-38-4632      TCGA-38-6178      TCGA-44-2655 
"SATB2 WILD-TYPE" "SATB2 WILD-TYPE" "SATB2 WILD-TYPE" "SATB2 WILD-TYPE" 
     TCGA-44-2656      TCGA-44-2657      TCGA-44-2659      TCGA-44-2661 
"SATB2 WILD-TYPE" "SATB2 WILD-TYPE" "SATB2 WILD-TYPE" "SATB2 WILD-TYPE" 
     TCGA-44-2662      TCGA-44-2665      TCGA-44-2666      TCGA-44-2668 
"SATB2 WILD-TYPE" "SATB2 WILD-TYPE" "SATB2 WILD-TYPE" "SATB2 WILD-TYPE" 
     TCGA-44-3396      TCGA-44-3398      TCGA-44-3918      TCGA-44-3919 
"SATB2 WILD-TYPE" "SATB2 WILD-TYPE"   "SATB2 MUTATED" "SATB2 WILD-TYPE" 
     TCGA-44-4112      TCGA-44-5643      TCGA-44-5645      TCGA-44-6144 
"SATB2 WILD-TYPE" "SATB2 WILD-TYPE" "SATB2 WILD-TYPE" "SATB2 WILD-TYPE" 
     TCGA-44-6145      TCGA-44-6146      TCGA-44-6147      TCGA-44-6148 
"SATB2 WILD-TYPE" "SATB2 WILD-TYPE" "SATB2 WILD-TYPE" "SATB2 WILD-TYPE" 
     TCGA-44-6774      TCGA-44-6775      TCGA-44-6776      TCGA-44-6777 
"SATB2 WILD-TYPE" "SATB2 WILD-TYPE" "SATB2 WILD-TYPE"   "SATB2 MUTATED" 
     TCGA-44-6778      TCGA-44-6779      TCGA-49-4486      TCGA-49-4487 
"SATB2 WILD-TYPE" "SATB2 WILD-TYPE" "SATB2 WILD-TYPE" "SATB2 WILD-TYPE" 
     TCGA-49-4488      TCGA-49-4490      TCGA-49-4494      TCGA-49-4501 
"SATB2 WILD-TYPE" "SATB2 WILD-TYPE" "SATB2 WILD-TYPE" "SATB2 WILD-TYPE" 
     TCGA-49-4505      TCGA-49-4506      TCGA-49-4507      TCGA-49-4510 
"SATB2 WILD-TYPE" "SATB2 WILD-TYPE" "SATB2 WILD-TYPE" "SATB2 WILD-TYPE" 
     TCGA-49-4512      TCGA-49-4514      TCGA-49-6742      TCGA-49-6743 
"SATB2 WILD-TYPE" "SATB2 WILD-TYPE" "SATB2 WILD-TYPE" "SATB2 WILD-TYPE" 
     TCGA-49-6744      TCGA-49-6745      TCGA-50-5044      TCGA-50-5045 
"SATB2 WILD-TYPE" "SATB2 WILD-TYPE" "SATB2 WILD-TYPE"   "SATB2 MUTATED" 
     TCGA-50-5049      TCGA-50-5051      TCGA-50-5055      TCGA-50-5066 
"SATB2 WILD-TYPE" "SATB2 WILD-TYPE" "SATB2 WILD-TYPE"   "SATB2 MUTATED" 
     TCGA-50-5068      TCGA-50-5072      TCGA-50-5930      TCGA-50-5931 
"SATB2 WILD-TYPE" "SATB2 WILD-TYPE" "SATB2 WILD-TYPE" "SATB2 WILD-TYPE" 
     TCGA-50-5932      TCGA-50-5933      TCGA-50-5935      TCGA-50-5936 
"SATB2 WILD-TYPE" "SATB2 WILD-TYPE" "SATB2 WILD-TYPE" "SATB2 WILD-TYPE" 
     TCGA-50-5939      TCGA-50-5941      TCGA-50-5942      TCGA-50-5944 
"SATB2 WILD-TYPE" "SATB2 WILD-TYPE" "SATB2 WILD-TYPE" "SATB2 WILD-TYPE" 
     TCGA-50-5946      TCGA-50-6590      TCGA-50-6591      TCGA-50-6592 
"SATB2 WILD-TYPE" "SATB2 WILD-TYPE" "SATB2 WILD-TYPE" "SATB2 WILD-TYPE" 
     TCGA-50-6593      TCGA-50-6594      TCGA-50-6595      TCGA-50-6597 
"SATB2 WILD-TYPE"   "SATB2 MUTATED" "SATB2 WILD-TYPE" "SATB2 WILD-TYPE" 
     TCGA-55-1592      TCGA-55-1594      TCGA-55-1595      TCGA-55-1596 
"SATB2 WILD-TYPE" "SATB2 WILD-TYPE" "SATB2 WILD-TYPE" "SATB2 WILD-TYPE" 
     TCGA-55-5899      TCGA-55-6543      TCGA-55-6642      TCGA-55-6712 
"SATB2 WILD-TYPE" "SATB2 WILD-TYPE" "SATB2 WILD-TYPE" "SATB2 WILD-TYPE" 
     TCGA-64-1676      TCGA-64-1677      TCGA-64-1678      TCGA-64-1680 
  "SATB2 MUTATED" "SATB2 WILD-TYPE" "SATB2 WILD-TYPE" "SATB2 WILD-TYPE" 
     TCGA-64-5774      TCGA-64-5775      TCGA-64-5778      TCGA-64-5779 
"SATB2 WILD-TYPE" "SATB2 WILD-TYPE" "SATB2 WILD-TYPE" "SATB2 WILD-TYPE" 
     TCGA-64-5781      TCGA-64-5815      TCGA-67-3770      TCGA-67-3771 
"SATB2 WILD-TYPE"   "SATB2 MUTATED" "SATB2 WILD-TYPE" "SATB2 WILD-TYPE" 
     TCGA-67-3772      TCGA-67-3773      TCGA-67-3774      TCGA-67-6215 
"SATB2 WILD-TYPE" "SATB2 WILD-TYPE" "SATB2 WILD-TYPE" "SATB2 WILD-TYPE" 
     TCGA-67-6216      TCGA-67-6217      TCGA-71-6725      TCGA-73-4658 
"SATB2 WILD-TYPE" "SATB2 WILD-TYPE" "SATB2 WILD-TYPE" "SATB2 WILD-TYPE" 
     TCGA-73-4659      TCGA-73-4662      TCGA-73-4666      TCGA-73-4668 
"SATB2 WILD-TYPE" "SATB2 WILD-TYPE" "SATB2 WILD-TYPE" "SATB2 WILD-TYPE" 
     TCGA-73-4670      TCGA-73-4675      TCGA-73-4676      TCGA-73-4677 
  "SATB2 MUTATED" "SATB2 WILD-TYPE" "SATB2 WILD-TYPE" "SATB2 WILD-TYPE" 
     TCGA-91-6828      TCGA-91-6829      TCGA-91-6831      TCGA-91-6835 
"SATB2 WILD-TYPE" "SATB2 WILD-TYPE" "SATB2 WILD-TYPE" "SATB2 WILD-TYPE" 
     TCGA-91-6836 
  "SATB2 MUTATED" 
     TCGA-05-4249      TCGA-05-4250      TCGA-05-4382      TCGA-05-4384 
"SATB2 WILD-TYPE" "SATB2 WILD-TYPE"   "SATB2 MUTATED" "SATB2 WILD-TYPE" 
     TCGA-05-4390      TCGA-05-4396      TCGA-05-4397      TCGA-05-4398 
"SATB2 WILD-TYPE" "SATB2 WILD-TYPE" "SATB2 WILD-TYPE"   "SATB2 MUTATED" 
     TCGA-05-4402      TCGA-05-4405      TCGA-05-4415      TCGA-05-4417 
"SATB2 WILD-TYPE" "SATB2 WILD-TYPE" "SATB2 WILD-TYPE" "SATB2 WILD-TYPE" 
     TCGA-05-4418      TCGA-05-4420      TCGA-05-4424      TCGA-05-4426 
"SATB2 WILD-TYPE"   "SATB2 MUTATED" "SATB2 WILD-TYPE" "SATB2 WILD-TYPE" 
     TCGA-05-4427      TCGA-05-4430      TCGA-05-4432      TCGA-05-4433 
"SATB2 WILD-TYPE" "SATB2 WILD-TYPE" "SATB2 WILD-TYPE" "SATB2 WILD-TYPE" 
     TCGA-05-4434      TCGA-05-5420      TCGA-05-5423      TCGA-05-5425 
"SATB2 WILD-TYPE" "SATB2 WILD-TYPE" "SATB2 WILD-TYPE" "SATB2 WILD-TYPE" 
     TCGA-05-5429      TCGA-05-5715      TCGA-35-3615      TCGA-35-4122 
"SATB2 WILD-TYPE" "SATB2 WILD-TYPE" "SATB2 WILD-TYPE" "SATB2 WILD-TYPE" 
     TCGA-35-4123      TCGA-35-5375      TCGA-38-4625      TCGA-38-4626 
"SATB2 WILD-TYPE" "SATB2 WILD-TYPE" "SATB2 WILD-TYPE" "SATB2 WILD-TYPE" 
     TCGA-38-4627      TCGA-38-4628      TCGA-38-4629      TCGA-38-4630 
"SATB2 WILD-TYPE" "SATB2 WILD-TYPE"   "SATB2 MUTATED" "SATB2 WILD-TYPE" 
     TCGA-38-4631      TCGA-38-4632      TCGA-38-6178      TCGA-44-2655 
"SATB2 WILD-TYPE" "SATB2 WILD-TYPE" "SATB2 WILD-TYPE" "SATB2 WILD-TYPE" 
     TCGA-44-2656      TCGA-44-2657      TCGA-44-2659      TCGA-44-2661 
"SATB2 WILD-TYPE" "SATB2 WILD-TYPE" "SATB2 WILD-TYPE" "SATB2 WILD-TYPE" 
     TCGA-44-2662      TCGA-44-2665      TCGA-44-2666      TCGA-44-2668 
"SATB2 WILD-TYPE" "SATB2 WILD-TYPE" "SATB2 WILD-TYPE" "SATB2 WILD-TYPE" 
     TCGA-44-3396      TCGA-44-3398      TCGA-44-3918      TCGA-44-3919 
"SATB2 WILD-TYPE" "SATB2 WILD-TYPE"   "SATB2 MUTATED" "SATB2 WILD-TYPE" 
     TCGA-44-4112      TCGA-44-5643      TCGA-44-5645      TCGA-44-6144 
"SATB2 WILD-TYPE" "SATB2 WILD-TYPE" "SATB2 WILD-TYPE" "SATB2 WILD-TYPE" 
     TCGA-44-6145      TCGA-44-6146      TCGA-44-6147      TCGA-44-6148 
"SATB2 WILD-TYPE" "SATB2 WILD-TYPE" "SATB2 WILD-TYPE" "SATB2 WILD-TYPE" 
     TCGA-44-6774      TCGA-44-6775      TCGA-44-6776      TCGA-44-6777 
"SATB2 WILD-TYPE" "SATB2 WILD-TYPE" "SATB2 WILD-TYPE"   "SATB2 MUTATED" 
     TCGA-44-6778      TCGA-44-6779      TCGA-49-4486      TCGA-49-4487 
"SATB2 WILD-TYPE" "SATB2 WILD-TYPE" "SATB2 WILD-TYPE" "SATB2 WILD-TYPE" 
     TCGA-49-4488      TCGA-49-4490      TCGA-49-4494      TCGA-49-4501 
"SATB2 WILD-TYPE" "SATB2 WILD-TYPE" "SATB2 WILD-TYPE" "SATB2 WILD-TYPE" 
     TCGA-49-4505      TCGA-49-4506      TCGA-49-4507      TCGA-49-4510 
"SATB2 WILD-TYPE" "SATB2 WILD-TYPE" "SATB2 WILD-TYPE" "SATB2 WILD-TYPE" 
     TCGA-49-4512      TCGA-49-4514      TCGA-49-6742      TCGA-49-6743 
"SATB2 WILD-TYPE" "SATB2 WILD-TYPE" "SATB2 WILD-TYPE" "SATB2 WILD-TYPE" 
     TCGA-49-6744      TCGA-49-6745      TCGA-50-5044      TCGA-50-5045 
"SATB2 WILD-TYPE" "SATB2 WILD-TYPE" "SATB2 WILD-TYPE"   "SATB2 MUTATED" 
     TCGA-50-5049      TCGA-50-5051      TCGA-50-5055      TCGA-50-5066 
"SATB2 WILD-TYPE" "SATB2 WILD-TYPE" "SATB2 WILD-TYPE"   "SATB2 MUTATED" 
     TCGA-50-5068      TCGA-50-5072      TCGA-50-5930      TCGA-50-5931 
"SATB2 WILD-TYPE" "SATB2 WILD-TYPE" "SATB2 WILD-TYPE" "SATB2 WILD-TYPE" 
     TCGA-50-5932      TCGA-50-5933      TCGA-50-5935      TCGA-50-5936 
"SATB2 WILD-TYPE" "SATB2 WILD-TYPE" "SATB2 WILD-TYPE" "SATB2 WILD-TYPE" 
     TCGA-50-5939      TCGA-50-5941      TCGA-50-5942      TCGA-50-5944 
"SATB2 WILD-TYPE" "SATB2 WILD-TYPE" "SATB2 WILD-TYPE" "SATB2 WILD-TYPE" 
     TCGA-50-5946      TCGA-50-6590      TCGA-50-6591      TCGA-50-6592 
"SATB2 WILD-TYPE" "SATB2 WILD-TYPE" "SATB2 WILD-TYPE" "SATB2 WILD-TYPE" 
     TCGA-50-6593      TCGA-50-6594      TCGA-50-6595      TCGA-50-6597 
"SATB2 WILD-TYPE"   "SATB2 MUTATED" "SATB2 WILD-TYPE" "SATB2 WILD-TYPE" 
     TCGA-55-1592      TCGA-55-1594      TCGA-55-1595      TCGA-55-1596 
"SATB2 WILD-TYPE" "SATB2 WILD-TYPE" "SATB2 WILD-TYPE" "SATB2 WILD-TYPE" 
     TCGA-55-5899      TCGA-55-6543      TCGA-55-6642      TCGA-55-6712 
"SATB2 WILD-TYPE" "SATB2 WILD-TYPE" "SATB2 WILD-TYPE" "SATB2 WILD-TYPE" 
     TCGA-64-1676      TCGA-64-1677      TCGA-64-1678      TCGA-64-1680 
  "SATB2 MUTATED" "SATB2 WILD-TYPE" "SATB2 WILD-TYPE" "SATB2 WILD-TYPE" 
     TCGA-64-5774      TCGA-64-5775      TCGA-64-5778      TCGA-64-5779 
"SATB2 WILD-TYPE" "SATB2 WILD-TYPE" "SATB2 WILD-TYPE" "SATB2 WILD-TYPE" 
     TCGA-64-5781      TCGA-64-5815      TCGA-67-3770      TCGA-67-3771 
"SATB2 WILD-TYPE"   "SATB2 MUTATED" "SATB2 WILD-TYPE" "SATB2 WILD-TYPE" 
     TCGA-67-3772      TCGA-67-3773      TCGA-67-3774      TCGA-67-6215 
"SATB2 WILD-TYPE" "SATB2 WILD-TYPE" "SATB2 WILD-TYPE" "SATB2 WILD-TYPE" 
     TCGA-67-6216      TCGA-67-6217      TCGA-71-6725      TCGA-73-4658 
"SATB2 WILD-TYPE" "SATB2 WILD-TYPE" "SATB2 WILD-TYPE" "SATB2 WILD-TYPE" 
     TCGA-73-4659      TCGA-73-4662      TCGA-73-4666      TCGA-73-4668 
"SATB2 WILD-TYPE" "SATB2 WILD-TYPE" "SATB2 WILD-TYPE" "SATB2 WILD-TYPE" 
     TCGA-73-4670      TCGA-73-4675      TCGA-73-4676      TCGA-73-4677 
  "SATB2 MUTATED" "SATB2 WILD-TYPE" "SATB2 WILD-TYPE" "SATB2 WILD-TYPE" 
     TCGA-91-6828      TCGA-91-6829      TCGA-91-6831      TCGA-91-6835 
"SATB2 WILD-TYPE" "SATB2 WILD-TYPE" "SATB2 WILD-TYPE" "SATB2 WILD-TYPE" 
     TCGA-91-6836 
  "SATB2 MUTATED" 
[1] "hr=" "1.5"
D64V2, continuous
D64V3, binary
[1] "tbl2"
                 cls
clus              [,1] [,2]
  SATB2 MUTATED      8    7
  SATB2 WILD-TYPE   85   72
        clus
vv       SATB2 MUTATED SATB2 WILD-TYPE
  FEMALE             8              85
  MALE               7              72
D64V4, continuous
D64V5, multiclass
D64V6, multiclass
    clus
vv   SATB2 MUTATED SATB2 WILD-TYPE
  T1             2              39
  T2             9              99
  T3             3              11
  T4             1               7
D64V7, multiclass
       clus
vv      SATB2 MUTATED SATB2 WILD-TYPE
  N0                9              86
  N1                2              35
  N2+N3             3              32
D64V8, multiclass
    clus
vv   SATB2 MUTATED SATB2 WILD-TYPE
  M0            12             125
  M1             1               8
  MX             2              20
D64V9, multiclass
     clus
vv    SATB2 MUTATED SATB2 WILD-TYPE
  I               9              79
  II              2              31
  III             3              36
  IV              1               8
D64V10, binary
[1] "tbl2"
                 cls
clus              [,1] [,2]
  SATB2 MUTATED      2   13
  SATB2 WILD-TYPE   14  143
     clus
vv    SATB2 MUTATED SATB2 WILD-TYPE
  NO              2              14
  YES            13             143
D64V11, continuous
D64V12, continuous
D64V13, multiclass
                                             clus
vv                                            SATB2 MUTATED SATB2 WILD-TYPE
  CURRENT REFORMED SMOKER FOR < OR = 15 YEARS             7              55
  CURRENT REFORMED SMOKER FOR > 15 YEARS                  2              44
  CURRENT SMOKER                                          4              24
  LIFELONG NON-SMOKER                                     1              23
D64V14, continuous

Clustering(65) Variable = MARCH11 MUTATION ANALYSIS
D65V1, survival
                   sevent
clus2                0  1
  MARCH11 MUTATED    4  3
  MARCH11 WILD-TYPE 95 47
  MARCH11 MUTATED MARCH11 WILD-TYPE 
                7               142 
  MARCH11 MUTATED MARCH11 WILD-TYPE 
                3                47 
$`MARCH11 MUTATED`
TCGA-05-4396 TCGA-05-4397 TCGA-05-4398 TCGA-44-6778 TCGA-55-1595 TCGA-64-5775 
        9.96        24.03        47.05        36.49        48.62         0.10 
TCGA-64-5781 
       39.52 

$`MARCH11 WILD-TYPE`
TCGA-05-4249 TCGA-05-4250 TCGA-05-4382 TCGA-05-4384 TCGA-05-4390 TCGA-05-4402 
       38.07         3.98        19.92        14.01        37.02         8.02 
TCGA-05-4405 TCGA-05-4415 TCGA-05-4417 TCGA-05-4418 TCGA-05-4420 TCGA-05-4424 
       20.05         2.96        14.93         8.98        29.95        30.02 
TCGA-05-4426 TCGA-05-4427 TCGA-05-4430 TCGA-05-4432 TCGA-05-4433 TCGA-05-4434 
       26.01        26.01        25.02        25.02        24.00        15.02 
TCGA-05-5420 TCGA-05-5423 TCGA-05-5425 TCGA-05-5429 TCGA-05-5715 TCGA-35-3615 
        1.02         4.96         2.96         0.99         2.04         0.46 
TCGA-35-4122 TCGA-35-4123 TCGA-35-5375 TCGA-38-4625 TCGA-38-4626 TCGA-38-4627 
        7.36         5.95         8.68        47.61        85.32        37.71 
TCGA-38-4628 TCGA-38-4629 TCGA-38-4630 TCGA-38-4631 TCGA-38-4632 TCGA-38-6178 
       49.02        28.37        35.28        11.64        44.61         5.19 
TCGA-44-2655 TCGA-44-2656 TCGA-44-2657 TCGA-44-2659 TCGA-44-2661 TCGA-44-2662 
       18.87        19.10        13.15        17.39         3.39        15.78 
TCGA-44-2665 TCGA-44-2666 TCGA-44-2668 TCGA-44-3396 TCGA-44-3398 TCGA-44-3918 
       13.15         3.19         8.09        10.22         8.32         6.44 
TCGA-44-3919 TCGA-44-4112 TCGA-44-5643 TCGA-44-5645 TCGA-44-6144 TCGA-44-6145 
        6.21         4.60         3.48         6.84         0.30         3.35 
TCGA-44-6146 TCGA-44-6147 TCGA-44-6148 TCGA-44-6774 TCGA-44-6775 TCGA-44-6776 
        9.93         7.76         3.12         5.42         2.70        63.72 
TCGA-44-6777 TCGA-44-6779 TCGA-49-4486 TCGA-49-4487 TCGA-49-4488 TCGA-49-4490 
       32.45        16.41        76.21        28.11        28.57        12.66 
TCGA-49-4494 TCGA-49-4501 TCGA-49-4505 TCGA-49-4506 TCGA-49-4507 TCGA-49-4510 
       35.54        46.72        14.07        32.84         8.81        29.46 
TCGA-49-4512 TCGA-49-4514 TCGA-49-6742 TCGA-49-6743 TCGA-49-6744 TCGA-49-6745 
       29.75        43.20        15.02        12.13        12.99         4.93 
TCGA-50-5044 TCGA-50-5045 TCGA-50-5049 TCGA-50-5051 TCGA-50-5055 TCGA-50-5066 
       20.48        71.47        48.82        14.96        25.81         9.76 
TCGA-50-5068 TCGA-50-5072 TCGA-50-5930 TCGA-50-5931 TCGA-50-5932 TCGA-50-5933 
       49.28         8.05         9.27         8.78        35.87        77.88 
TCGA-50-5935 TCGA-50-5936 TCGA-50-5939 TCGA-50-5941 TCGA-50-5942 TCGA-50-5944 
       21.47         8.45        15.12         9.37         4.44        12.26 
TCGA-50-5946 TCGA-50-6590 TCGA-50-6591 TCGA-50-6592 TCGA-50-6593 TCGA-50-6594 
       11.47        42.31         3.88        25.51        11.05        12.16 
TCGA-50-6595 TCGA-50-6597 TCGA-55-1592 TCGA-55-1594 TCGA-55-1596 TCGA-55-5899 
        6.21        33.37        23.05        38.73        45.17         2.86 
TCGA-55-6543 TCGA-55-6642 TCGA-55-6712 TCGA-64-1676 TCGA-64-1677 TCGA-64-1678 
        0.07        32.61         0.79        56.81        20.65        39.09 
TCGA-64-1680 TCGA-64-5774 TCGA-64-5778 TCGA-64-5779 TCGA-64-5815 TCGA-67-3770 
       37.02        83.84        30.44        16.67         7.33         0.99 
TCGA-67-3771 TCGA-67-3772 TCGA-67-3773 TCGA-67-3774 TCGA-67-6215 TCGA-67-6216 
        1.97         0.59         2.04         0.59         0.89         0.69 
TCGA-67-6217 TCGA-71-6725 TCGA-73-4658 TCGA-73-4659 TCGA-73-4662 TCGA-73-4666 
       13.87         2.01        52.57        23.38        29.95        20.28 
TCGA-73-4668 TCGA-73-4670 TCGA-73-4675 TCGA-73-4676 TCGA-73-4677 TCGA-91-6828 
       15.35         0.46         1.32         4.01         1.25         1.22 
TCGA-91-6829 TCGA-91-6831 TCGA-91-6835 TCGA-91-6836 
       41.33         1.28         1.15         0.36 

  MARCH11 MUTATED MARCH11 WILD-TYPE 
             0.10              0.07 
  MARCH11 MUTATED MARCH11 WILD-TYPE 
            48.62             85.32 
  MARCH11 MUTATED MARCH11 WILD-TYPE 
            36.49             13.15 
[1] "0.1 - 48.6 (36.5)" "0.1 - 85.3 (13.2)"
       TCGA-05-4249        TCGA-05-4250        TCGA-05-4382        TCGA-05-4384 
"MARCH11 WILD-TYPE" "MARCH11 WILD-TYPE" "MARCH11 WILD-TYPE" "MARCH11 WILD-TYPE" 
       TCGA-05-4390        TCGA-05-4396        TCGA-05-4397        TCGA-05-4398 
"MARCH11 WILD-TYPE"   "MARCH11 MUTATED"   "MARCH11 MUTATED"   "MARCH11 MUTATED" 
       TCGA-05-4402        TCGA-05-4405        TCGA-05-4415        TCGA-05-4417 
"MARCH11 WILD-TYPE" "MARCH11 WILD-TYPE" "MARCH11 WILD-TYPE" "MARCH11 WILD-TYPE" 
       TCGA-05-4418        TCGA-05-4420        TCGA-05-4424        TCGA-05-4426 
"MARCH11 WILD-TYPE" "MARCH11 WILD-TYPE" "MARCH11 WILD-TYPE" "MARCH11 WILD-TYPE" 
       TCGA-05-4427        TCGA-05-4430        TCGA-05-4432        TCGA-05-4433 
"MARCH11 WILD-TYPE" "MARCH11 WILD-TYPE" "MARCH11 WILD-TYPE" "MARCH11 WILD-TYPE" 
       TCGA-05-4434        TCGA-05-5420        TCGA-05-5423        TCGA-05-5425 
"MARCH11 WILD-TYPE" "MARCH11 WILD-TYPE" "MARCH11 WILD-TYPE" "MARCH11 WILD-TYPE" 
       TCGA-05-5429        TCGA-05-5715        TCGA-35-3615        TCGA-35-4122 
"MARCH11 WILD-TYPE" "MARCH11 WILD-TYPE" "MARCH11 WILD-TYPE" "MARCH11 WILD-TYPE" 
       TCGA-35-4123        TCGA-35-5375        TCGA-38-4625        TCGA-38-4626 
"MARCH11 WILD-TYPE" "MARCH11 WILD-TYPE" "MARCH11 WILD-TYPE" "MARCH11 WILD-TYPE" 
       TCGA-38-4627        TCGA-38-4628        TCGA-38-4629        TCGA-38-4630 
"MARCH11 WILD-TYPE" "MARCH11 WILD-TYPE" "MARCH11 WILD-TYPE" "MARCH11 WILD-TYPE" 
       TCGA-38-4631        TCGA-38-4632        TCGA-38-6178        TCGA-44-2655 
"MARCH11 WILD-TYPE" "MARCH11 WILD-TYPE" "MARCH11 WILD-TYPE" "MARCH11 WILD-TYPE" 
       TCGA-44-2656        TCGA-44-2657        TCGA-44-2659        TCGA-44-2661 
"MARCH11 WILD-TYPE" "MARCH11 WILD-TYPE" "MARCH11 WILD-TYPE" "MARCH11 WILD-TYPE" 
       TCGA-44-2662        TCGA-44-2665        TCGA-44-2666        TCGA-44-2668 
"MARCH11 WILD-TYPE" "MARCH11 WILD-TYPE" "MARCH11 WILD-TYPE" "MARCH11 WILD-TYPE" 
       TCGA-44-3396        TCGA-44-3398        TCGA-44-3918        TCGA-44-3919 
"MARCH11 WILD-TYPE" "MARCH11 WILD-TYPE" "MARCH11 WILD-TYPE" "MARCH11 WILD-TYPE" 
       TCGA-44-4112        TCGA-44-5643        TCGA-44-5645        TCGA-44-6144 
"MARCH11 WILD-TYPE" "MARCH11 WILD-TYPE" "MARCH11 WILD-TYPE" "MARCH11 WILD-TYPE" 
       TCGA-44-6145        TCGA-44-6146        TCGA-44-6147        TCGA-44-6148 
"MARCH11 WILD-TYPE" "MARCH11 WILD-TYPE" "MARCH11 WILD-TYPE" "MARCH11 WILD-TYPE" 
       TCGA-44-6774        TCGA-44-6775        TCGA-44-6776        TCGA-44-6777 
"MARCH11 WILD-TYPE" "MARCH11 WILD-TYPE" "MARCH11 WILD-TYPE" "MARCH11 WILD-TYPE" 
       TCGA-44-6778        TCGA-44-6779        TCGA-49-4486        TCGA-49-4487 
  "MARCH11 MUTATED" "MARCH11 WILD-TYPE" "MARCH11 WILD-TYPE" "MARCH11 WILD-TYPE" 
       TCGA-49-4488        TCGA-49-4490        TCGA-49-4494        TCGA-49-4501 
"MARCH11 WILD-TYPE" "MARCH11 WILD-TYPE" "MARCH11 WILD-TYPE" "MARCH11 WILD-TYPE" 
       TCGA-49-4505        TCGA-49-4506        TCGA-49-4507        TCGA-49-4510 
"MARCH11 WILD-TYPE" "MARCH11 WILD-TYPE" "MARCH11 WILD-TYPE" "MARCH11 WILD-TYPE" 
       TCGA-49-4512        TCGA-49-4514        TCGA-49-6742        TCGA-49-6743 
"MARCH11 WILD-TYPE" "MARCH11 WILD-TYPE" "MARCH11 WILD-TYPE" "MARCH11 WILD-TYPE" 
       TCGA-49-6744        TCGA-49-6745        TCGA-50-5044        TCGA-50-5045 
"MARCH11 WILD-TYPE" "MARCH11 WILD-TYPE" "MARCH11 WILD-TYPE" "MARCH11 WILD-TYPE" 
       TCGA-50-5049        TCGA-50-5051        TCGA-50-5055        TCGA-50-5066 
"MARCH11 WILD-TYPE" "MARCH11 WILD-TYPE" "MARCH11 WILD-TYPE" "MARCH11 WILD-TYPE" 
       TCGA-50-5068        TCGA-50-5072        TCGA-50-5930        TCGA-50-5931 
"MARCH11 WILD-TYPE" "MARCH11 WILD-TYPE" "MARCH11 WILD-TYPE" "MARCH11 WILD-TYPE" 
       TCGA-50-5932        TCGA-50-5933        TCGA-50-5935        TCGA-50-5936 
"MARCH11 WILD-TYPE" "MARCH11 WILD-TYPE" "MARCH11 WILD-TYPE" "MARCH11 WILD-TYPE" 
       TCGA-50-5939        TCGA-50-5941        TCGA-50-5942        TCGA-50-5944 
"MARCH11 WILD-TYPE" "MARCH11 WILD-TYPE" "MARCH11 WILD-TYPE" "MARCH11 WILD-TYPE" 
       TCGA-50-5946        TCGA-50-6590        TCGA-50-6591        TCGA-50-6592 
"MARCH11 WILD-TYPE" "MARCH11 WILD-TYPE" "MARCH11 WILD-TYPE" "MARCH11 WILD-TYPE" 
       TCGA-50-6593        TCGA-50-6594        TCGA-50-6595        TCGA-50-6597 
"MARCH11 WILD-TYPE" "MARCH11 WILD-TYPE" "MARCH11 WILD-TYPE" "MARCH11 WILD-TYPE" 
       TCGA-55-1592        TCGA-55-1594        TCGA-55-1595        TCGA-55-1596 
"MARCH11 WILD-TYPE" "MARCH11 WILD-TYPE"   "MARCH11 MUTATED" "MARCH11 WILD-TYPE" 
       TCGA-55-5899        TCGA-55-6543        TCGA-55-6642        TCGA-55-6712 
"MARCH11 WILD-TYPE" "MARCH11 WILD-TYPE" "MARCH11 WILD-TYPE" "MARCH11 WILD-TYPE" 
       TCGA-64-1676        TCGA-64-1677        TCGA-64-1678        TCGA-64-1680 
"MARCH11 WILD-TYPE" "MARCH11 WILD-TYPE" "MARCH11 WILD-TYPE" "MARCH11 WILD-TYPE" 
       TCGA-64-5774        TCGA-64-5775        TCGA-64-5778        TCGA-64-5779 
"MARCH11 WILD-TYPE"   "MARCH11 MUTATED" "MARCH11 WILD-TYPE" "MARCH11 WILD-TYPE" 
       TCGA-64-5781        TCGA-64-5815        TCGA-67-3770        TCGA-67-3771 
  "MARCH11 MUTATED" "MARCH11 WILD-TYPE" "MARCH11 WILD-TYPE" "MARCH11 WILD-TYPE" 
       TCGA-67-3772        TCGA-67-3773        TCGA-67-3774        TCGA-67-6215 
"MARCH11 WILD-TYPE" "MARCH11 WILD-TYPE" "MARCH11 WILD-TYPE" "MARCH11 WILD-TYPE" 
       TCGA-67-6216        TCGA-67-6217        TCGA-71-6725        TCGA-73-4658 
"MARCH11 WILD-TYPE" "MARCH11 WILD-TYPE" "MARCH11 WILD-TYPE" "MARCH11 WILD-TYPE" 
       TCGA-73-4659        TCGA-73-4662        TCGA-73-4666        TCGA-73-4668 
"MARCH11 WILD-TYPE" "MARCH11 WILD-TYPE" "MARCH11 WILD-TYPE" "MARCH11 WILD-TYPE" 
       TCGA-73-4670        TCGA-73-4675        TCGA-73-4676        TCGA-73-4677 
"MARCH11 WILD-TYPE" "MARCH11 WILD-TYPE" "MARCH11 WILD-TYPE" "MARCH11 WILD-TYPE" 
       TCGA-91-6828        TCGA-91-6829        TCGA-91-6831        TCGA-91-6835 
"MARCH11 WILD-TYPE" "MARCH11 WILD-TYPE" "MARCH11 WILD-TYPE" "MARCH11 WILD-TYPE" 
       TCGA-91-6836 
"MARCH11 WILD-TYPE" 
       TCGA-05-4249        TCGA-05-4250        TCGA-05-4382        TCGA-05-4384 
"MARCH11 WILD-TYPE" "MARCH11 WILD-TYPE" "MARCH11 WILD-TYPE" "MARCH11 WILD-TYPE" 
       TCGA-05-4390        TCGA-05-4396        TCGA-05-4397        TCGA-05-4398 
"MARCH11 WILD-TYPE"   "MARCH11 MUTATED"   "MARCH11 MUTATED"   "MARCH11 MUTATED" 
       TCGA-05-4402        TCGA-05-4405        TCGA-05-4415        TCGA-05-4417 
"MARCH11 WILD-TYPE" "MARCH11 WILD-TYPE" "MARCH11 WILD-TYPE" "MARCH11 WILD-TYPE" 
       TCGA-05-4418        TCGA-05-4420        TCGA-05-4424        TCGA-05-4426 
"MARCH11 WILD-TYPE" "MARCH11 WILD-TYPE" "MARCH11 WILD-TYPE" "MARCH11 WILD-TYPE" 
       TCGA-05-4427        TCGA-05-4430        TCGA-05-4432        TCGA-05-4433 
"MARCH11 WILD-TYPE" "MARCH11 WILD-TYPE" "MARCH11 WILD-TYPE" "MARCH11 WILD-TYPE" 
       TCGA-05-4434        TCGA-05-5420        TCGA-05-5423        TCGA-05-5425 
"MARCH11 WILD-TYPE" "MARCH11 WILD-TYPE" "MARCH11 WILD-TYPE" "MARCH11 WILD-TYPE" 
       TCGA-05-5429        TCGA-05-5715        TCGA-35-3615        TCGA-35-4122 
"MARCH11 WILD-TYPE" "MARCH11 WILD-TYPE" "MARCH11 WILD-TYPE" "MARCH11 WILD-TYPE" 
       TCGA-35-4123        TCGA-35-5375        TCGA-38-4625        TCGA-38-4626 
"MARCH11 WILD-TYPE" "MARCH11 WILD-TYPE" "MARCH11 WILD-TYPE" "MARCH11 WILD-TYPE" 
       TCGA-38-4627        TCGA-38-4628        TCGA-38-4629        TCGA-38-4630 
"MARCH11 WILD-TYPE" "MARCH11 WILD-TYPE" "MARCH11 WILD-TYPE" "MARCH11 WILD-TYPE" 
       TCGA-38-4631        TCGA-38-4632        TCGA-38-6178        TCGA-44-2655 
"MARCH11 WILD-TYPE" "MARCH11 WILD-TYPE" "MARCH11 WILD-TYPE" "MARCH11 WILD-TYPE" 
       TCGA-44-2656        TCGA-44-2657        TCGA-44-2659        TCGA-44-2661 
"MARCH11 WILD-TYPE" "MARCH11 WILD-TYPE" "MARCH11 WILD-TYPE" "MARCH11 WILD-TYPE" 
       TCGA-44-2662        TCGA-44-2665        TCGA-44-2666        TCGA-44-2668 
"MARCH11 WILD-TYPE" "MARCH11 WILD-TYPE" "MARCH11 WILD-TYPE" "MARCH11 WILD-TYPE" 
       TCGA-44-3396        TCGA-44-3398        TCGA-44-3918        TCGA-44-3919 
"MARCH11 WILD-TYPE" "MARCH11 WILD-TYPE" "MARCH11 WILD-TYPE" "MARCH11 WILD-TYPE" 
       TCGA-44-4112        TCGA-44-5643        TCGA-44-5645        TCGA-44-6144 
"MARCH11 WILD-TYPE" "MARCH11 WILD-TYPE" "MARCH11 WILD-TYPE" "MARCH11 WILD-TYPE" 
       TCGA-44-6145        TCGA-44-6146        TCGA-44-6147        TCGA-44-6148 
"MARCH11 WILD-TYPE" "MARCH11 WILD-TYPE" "MARCH11 WILD-TYPE" "MARCH11 WILD-TYPE" 
       TCGA-44-6774        TCGA-44-6775        TCGA-44-6776        TCGA-44-6777 
"MARCH11 WILD-TYPE" "MARCH11 WILD-TYPE" "MARCH11 WILD-TYPE" "MARCH11 WILD-TYPE" 
       TCGA-44-6778        TCGA-44-6779        TCGA-49-4486        TCGA-49-4487 
  "MARCH11 MUTATED" "MARCH11 WILD-TYPE" "MARCH11 WILD-TYPE" "MARCH11 WILD-TYPE" 
       TCGA-49-4488        TCGA-49-4490        TCGA-49-4494        TCGA-49-4501 
"MARCH11 WILD-TYPE" "MARCH11 WILD-TYPE" "MARCH11 WILD-TYPE" "MARCH11 WILD-TYPE" 
       TCGA-49-4505        TCGA-49-4506        TCGA-49-4507        TCGA-49-4510 
"MARCH11 WILD-TYPE" "MARCH11 WILD-TYPE" "MARCH11 WILD-TYPE" "MARCH11 WILD-TYPE" 
       TCGA-49-4512        TCGA-49-4514        TCGA-49-6742        TCGA-49-6743 
"MARCH11 WILD-TYPE" "MARCH11 WILD-TYPE" "MARCH11 WILD-TYPE" "MARCH11 WILD-TYPE" 
       TCGA-49-6744        TCGA-49-6745        TCGA-50-5044        TCGA-50-5045 
"MARCH11 WILD-TYPE" "MARCH11 WILD-TYPE" "MARCH11 WILD-TYPE" "MARCH11 WILD-TYPE" 
       TCGA-50-5049        TCGA-50-5051        TCGA-50-5055        TCGA-50-5066 
"MARCH11 WILD-TYPE" "MARCH11 WILD-TYPE" "MARCH11 WILD-TYPE" "MARCH11 WILD-TYPE" 
       TCGA-50-5068        TCGA-50-5072        TCGA-50-5930        TCGA-50-5931 
"MARCH11 WILD-TYPE" "MARCH11 WILD-TYPE" "MARCH11 WILD-TYPE" "MARCH11 WILD-TYPE" 
       TCGA-50-5932        TCGA-50-5933        TCGA-50-5935        TCGA-50-5936 
"MARCH11 WILD-TYPE" "MARCH11 WILD-TYPE" "MARCH11 WILD-TYPE" "MARCH11 WILD-TYPE" 
       TCGA-50-5939        TCGA-50-5941        TCGA-50-5942        TCGA-50-5944 
"MARCH11 WILD-TYPE" "MARCH11 WILD-TYPE" "MARCH11 WILD-TYPE" "MARCH11 WILD-TYPE" 
       TCGA-50-5946        TCGA-50-6590        TCGA-50-6591        TCGA-50-6592 
"MARCH11 WILD-TYPE" "MARCH11 WILD-TYPE" "MARCH11 WILD-TYPE" "MARCH11 WILD-TYPE" 
       TCGA-50-6593        TCGA-50-6594        TCGA-50-6595        TCGA-50-6597 
"MARCH11 WILD-TYPE" "MARCH11 WILD-TYPE" "MARCH11 WILD-TYPE" "MARCH11 WILD-TYPE" 
       TCGA-55-1592        TCGA-55-1594        TCGA-55-1595        TCGA-55-1596 
"MARCH11 WILD-TYPE" "MARCH11 WILD-TYPE"   "MARCH11 MUTATED" "MARCH11 WILD-TYPE" 
       TCGA-55-5899        TCGA-55-6543        TCGA-55-6642        TCGA-55-6712 
"MARCH11 WILD-TYPE" "MARCH11 WILD-TYPE" "MARCH11 WILD-TYPE" "MARCH11 WILD-TYPE" 
       TCGA-64-1676        TCGA-64-1677        TCGA-64-1678        TCGA-64-1680 
"MARCH11 WILD-TYPE" "MARCH11 WILD-TYPE" "MARCH11 WILD-TYPE" "MARCH11 WILD-TYPE" 
       TCGA-64-5774        TCGA-64-5775        TCGA-64-5778        TCGA-64-5779 
"MARCH11 WILD-TYPE"   "MARCH11 MUTATED" "MARCH11 WILD-TYPE" "MARCH11 WILD-TYPE" 
       TCGA-64-5781        TCGA-64-5815        TCGA-67-3770        TCGA-67-3771 
  "MARCH11 MUTATED" "MARCH11 WILD-TYPE" "MARCH11 WILD-TYPE" "MARCH11 WILD-TYPE" 
       TCGA-67-3772        TCGA-67-3773        TCGA-67-3774        TCGA-67-6215 
"MARCH11 WILD-TYPE" "MARCH11 WILD-TYPE" "MARCH11 WILD-TYPE" "MARCH11 WILD-TYPE" 
       TCGA-67-6216        TCGA-67-6217        TCGA-71-6725        TCGA-73-4658 
"MARCH11 WILD-TYPE" "MARCH11 WILD-TYPE" "MARCH11 WILD-TYPE" "MARCH11 WILD-TYPE" 
       TCGA-73-4659        TCGA-73-4662        TCGA-73-4666        TCGA-73-4668 
"MARCH11 WILD-TYPE" "MARCH11 WILD-TYPE" "MARCH11 WILD-TYPE" "MARCH11 WILD-TYPE" 
       TCGA-73-4670        TCGA-73-4675        TCGA-73-4676        TCGA-73-4677 
"MARCH11 WILD-TYPE" "MARCH11 WILD-TYPE" "MARCH11 WILD-TYPE" "MARCH11 WILD-TYPE" 
       TCGA-91-6828        TCGA-91-6829        TCGA-91-6831        TCGA-91-6835 
"MARCH11 WILD-TYPE" "MARCH11 WILD-TYPE" "MARCH11 WILD-TYPE" "MARCH11 WILD-TYPE" 
       TCGA-91-6836 
"MARCH11 WILD-TYPE" 
       TCGA-05-4249        TCGA-05-4250        TCGA-05-4382        TCGA-05-4384 
"MARCH11 WILD-TYPE" "MARCH11 WILD-TYPE" "MARCH11 WILD-TYPE" "MARCH11 WILD-TYPE" 
       TCGA-05-4390        TCGA-05-4396        TCGA-05-4397        TCGA-05-4398 
"MARCH11 WILD-TYPE"   "MARCH11 MUTATED"   "MARCH11 MUTATED"   "MARCH11 MUTATED" 
       TCGA-05-4402        TCGA-05-4405        TCGA-05-4415        TCGA-05-4417 
"MARCH11 WILD-TYPE" "MARCH11 WILD-TYPE" "MARCH11 WILD-TYPE" "MARCH11 WILD-TYPE" 
       TCGA-05-4418        TCGA-05-4420        TCGA-05-4424        TCGA-05-4426 
"MARCH11 WILD-TYPE" "MARCH11 WILD-TYPE" "MARCH11 WILD-TYPE" "MARCH11 WILD-TYPE" 
       TCGA-05-4427        TCGA-05-4430        TCGA-05-4432        TCGA-05-4433 
"MARCH11 WILD-TYPE" "MARCH11 WILD-TYPE" "MARCH11 WILD-TYPE" "MARCH11 WILD-TYPE" 
       TCGA-05-4434        TCGA-05-5420        TCGA-05-5423        TCGA-05-5425 
"MARCH11 WILD-TYPE" "MARCH11 WILD-TYPE" "MARCH11 WILD-TYPE" "MARCH11 WILD-TYPE" 
       TCGA-05-5429        TCGA-05-5715        TCGA-35-3615        TCGA-35-4122 
"MARCH11 WILD-TYPE" "MARCH11 WILD-TYPE" "MARCH11 WILD-TYPE" "MARCH11 WILD-TYPE" 
       TCGA-35-4123        TCGA-35-5375        TCGA-38-4625        TCGA-38-4626 
"MARCH11 WILD-TYPE" "MARCH11 WILD-TYPE" "MARCH11 WILD-TYPE" "MARCH11 WILD-TYPE" 
       TCGA-38-4627        TCGA-38-4628        TCGA-38-4629        TCGA-38-4630 
"MARCH11 WILD-TYPE" "MARCH11 WILD-TYPE" "MARCH11 WILD-TYPE" "MARCH11 WILD-TYPE" 
       TCGA-38-4631        TCGA-38-4632        TCGA-38-6178        TCGA-44-2655 
"MARCH11 WILD-TYPE" "MARCH11 WILD-TYPE" "MARCH11 WILD-TYPE" "MARCH11 WILD-TYPE" 
       TCGA-44-2656        TCGA-44-2657        TCGA-44-2659        TCGA-44-2661 
"MARCH11 WILD-TYPE" "MARCH11 WILD-TYPE" "MARCH11 WILD-TYPE" "MARCH11 WILD-TYPE" 
       TCGA-44-2662        TCGA-44-2665        TCGA-44-2666        TCGA-44-2668 
"MARCH11 WILD-TYPE" "MARCH11 WILD-TYPE" "MARCH11 WILD-TYPE" "MARCH11 WILD-TYPE" 
       TCGA-44-3396        TCGA-44-3398        TCGA-44-3918        TCGA-44-3919 
"MARCH11 WILD-TYPE" "MARCH11 WILD-TYPE" "MARCH11 WILD-TYPE" "MARCH11 WILD-TYPE" 
       TCGA-44-4112        TCGA-44-5643        TCGA-44-5645        TCGA-44-6144 
"MARCH11 WILD-TYPE" "MARCH11 WILD-TYPE" "MARCH11 WILD-TYPE" "MARCH11 WILD-TYPE" 
       TCGA-44-6145        TCGA-44-6146        TCGA-44-6147        TCGA-44-6148 
"MARCH11 WILD-TYPE" "MARCH11 WILD-TYPE" "MARCH11 WILD-TYPE" "MARCH11 WILD-TYPE" 
       TCGA-44-6774        TCGA-44-6775        TCGA-44-6776        TCGA-44-6777 
"MARCH11 WILD-TYPE" "MARCH11 WILD-TYPE" "MARCH11 WILD-TYPE" "MARCH11 WILD-TYPE" 
       TCGA-44-6778        TCGA-44-6779        TCGA-49-4486        TCGA-49-4487 
  "MARCH11 MUTATED" "MARCH11 WILD-TYPE" "MARCH11 WILD-TYPE" "MARCH11 WILD-TYPE" 
       TCGA-49-4488        TCGA-49-4490        TCGA-49-4494        TCGA-49-4501 
"MARCH11 WILD-TYPE" "MARCH11 WILD-TYPE" "MARCH11 WILD-TYPE" "MARCH11 WILD-TYPE" 
       TCGA-49-4505        TCGA-49-4506        TCGA-49-4507        TCGA-49-4510 
"MARCH11 WILD-TYPE" "MARCH11 WILD-TYPE" "MARCH11 WILD-TYPE" "MARCH11 WILD-TYPE" 
       TCGA-49-4512        TCGA-49-4514        TCGA-49-6742        TCGA-49-6743 
"MARCH11 WILD-TYPE" "MARCH11 WILD-TYPE" "MARCH11 WILD-TYPE" "MARCH11 WILD-TYPE" 
       TCGA-49-6744        TCGA-49-6745        TCGA-50-5044        TCGA-50-5045 
"MARCH11 WILD-TYPE" "MARCH11 WILD-TYPE" "MARCH11 WILD-TYPE" "MARCH11 WILD-TYPE" 
       TCGA-50-5049        TCGA-50-5051        TCGA-50-5055        TCGA-50-5066 
"MARCH11 WILD-TYPE" "MARCH11 WILD-TYPE" "MARCH11 WILD-TYPE" "MARCH11 WILD-TYPE" 
       TCGA-50-5068        TCGA-50-5072        TCGA-50-5930        TCGA-50-5931 
"MARCH11 WILD-TYPE" "MARCH11 WILD-TYPE" "MARCH11 WILD-TYPE" "MARCH11 WILD-TYPE" 
       TCGA-50-5932        TCGA-50-5933        TCGA-50-5935        TCGA-50-5936 
"MARCH11 WILD-TYPE" "MARCH11 WILD-TYPE" "MARCH11 WILD-TYPE" "MARCH11 WILD-TYPE" 
       TCGA-50-5939        TCGA-50-5941        TCGA-50-5942        TCGA-50-5944 
"MARCH11 WILD-TYPE" "MARCH11 WILD-TYPE" "MARCH11 WILD-TYPE" "MARCH11 WILD-TYPE" 
       TCGA-50-5946        TCGA-50-6590        TCGA-50-6591        TCGA-50-6592 
"MARCH11 WILD-TYPE" "MARCH11 WILD-TYPE" "MARCH11 WILD-TYPE" "MARCH11 WILD-TYPE" 
       TCGA-50-6593        TCGA-50-6594        TCGA-50-6595        TCGA-50-6597 
"MARCH11 WILD-TYPE" "MARCH11 WILD-TYPE" "MARCH11 WILD-TYPE" "MARCH11 WILD-TYPE" 
       TCGA-55-1592        TCGA-55-1594        TCGA-55-1595        TCGA-55-1596 
"MARCH11 WILD-TYPE" "MARCH11 WILD-TYPE"   "MARCH11 MUTATED" "MARCH11 WILD-TYPE" 
       TCGA-55-5899        TCGA-55-6543        TCGA-55-6642        TCGA-55-6712 
"MARCH11 WILD-TYPE" "MARCH11 WILD-TYPE" "MARCH11 WILD-TYPE" "MARCH11 WILD-TYPE" 
       TCGA-64-1676        TCGA-64-1677        TCGA-64-1678        TCGA-64-1680 
"MARCH11 WILD-TYPE" "MARCH11 WILD-TYPE" "MARCH11 WILD-TYPE" "MARCH11 WILD-TYPE" 
       TCGA-64-5774        TCGA-64-5775        TCGA-64-5778        TCGA-64-5779 
"MARCH11 WILD-TYPE"   "MARCH11 MUTATED" "MARCH11 WILD-TYPE" "MARCH11 WILD-TYPE" 
       TCGA-64-5781        TCGA-64-5815        TCGA-67-3770        TCGA-67-3771 
  "MARCH11 MUTATED" "MARCH11 WILD-TYPE" "MARCH11 WILD-TYPE" "MARCH11 WILD-TYPE" 
       TCGA-67-3772        TCGA-67-3773        TCGA-67-3774        TCGA-67-6215 
"MARCH11 WILD-TYPE" "MARCH11 WILD-TYPE" "MARCH11 WILD-TYPE" "MARCH11 WILD-TYPE" 
       TCGA-67-6216        TCGA-67-6217        TCGA-71-6725        TCGA-73-4658 
"MARCH11 WILD-TYPE" "MARCH11 WILD-TYPE" "MARCH11 WILD-TYPE" "MARCH11 WILD-TYPE" 
       TCGA-73-4659        TCGA-73-4662        TCGA-73-4666        TCGA-73-4668 
"MARCH11 WILD-TYPE" "MARCH11 WILD-TYPE" "MARCH11 WILD-TYPE" "MARCH11 WILD-TYPE" 
       TCGA-73-4670        TCGA-73-4675        TCGA-73-4676        TCGA-73-4677 
"MARCH11 WILD-TYPE" "MARCH11 WILD-TYPE" "MARCH11 WILD-TYPE" "MARCH11 WILD-TYPE" 
       TCGA-91-6828        TCGA-91-6829        TCGA-91-6831        TCGA-91-6835 
"MARCH11 WILD-TYPE" "MARCH11 WILD-TYPE" "MARCH11 WILD-TYPE" "MARCH11 WILD-TYPE" 
       TCGA-91-6836 
"MARCH11 WILD-TYPE" 
[1] "hr=" "1.2"
D65V2, continuous
D65V3, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  MARCH11 MUTATED      4    4
  MARCH11 WILD-TYPE   89   75
        clus
vv       MARCH11 MUTATED MARCH11 WILD-TYPE
  FEMALE               4                89
  MALE                 4                75
D65V4, continuous
D65V5, multiclass
D65V6, multiclass
    clus
vv   MARCH11 MUTATED MARCH11 WILD-TYPE
  T1               2                39
  T2               2               106
  T3               1                13
  T4               3                 5
D65V7, multiclass
       clus
vv      MARCH11 MUTATED MARCH11 WILD-TYPE
  N0                  4                91
  N1                  2                35
  N2+N3               2                33
D65V8, multiclass
    clus
vv   MARCH11 MUTATED MARCH11 WILD-TYPE
  M0               7               130
  M1               0                 9
  MX               1                21
D65V9, multiclass
     clus
vv    MARCH11 MUTATED MARCH11 WILD-TYPE
  I                 3                85
  II                1                32
  III               4                35
  IV                0                 9
D65V10, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  MARCH11 MUTATED      0    8
  MARCH11 WILD-TYPE   16  148
     clus
vv    MARCH11 MUTATED MARCH11 WILD-TYPE
  NO                0                16
  YES               8               148
D65V11, continuous
D65V12, continuous
D65V13, multiclass
                                             clus
vv                                            MARCH11 MUTATED MARCH11 WILD-TYPE
  CURRENT REFORMED SMOKER FOR < OR = 15 YEARS               4                58
  CURRENT REFORMED SMOKER FOR > 15 YEARS                    1                45
  CURRENT SMOKER                                            3                25
  LIFELONG NON-SMOKER                                       0                24
D65V14, continuous

Clustering(66) Variable = KRTAP19-6 MUTATION ANALYSIS
D66V1, survival
                     sevent
clus2                  0  1
  KRTAP19-6 MUTATED    3  0
  KRTAP19-6 WILD-TYPE 96 50
  KRTAP19-6 MUTATED KRTAP19-6 WILD-TYPE 
                  3                 146 
  KRTAP19-6 MUTATED KRTAP19-6 WILD-TYPE 
                  0                  50 
$`KRTAP19-6 MUTATED`
TCGA-44-2659 TCGA-64-1676 TCGA-64-5778 
       17.39        56.81        30.44 

$`KRTAP19-6 WILD-TYPE`
TCGA-05-4249 TCGA-05-4250 TCGA-05-4382 TCGA-05-4384 TCGA-05-4390 TCGA-05-4396 
       38.07         3.98        19.92        14.01        37.02         9.96 
TCGA-05-4397 TCGA-05-4398 TCGA-05-4402 TCGA-05-4405 TCGA-05-4415 TCGA-05-4417 
       24.03        47.05         8.02        20.05         2.96        14.93 
TCGA-05-4418 TCGA-05-4420 TCGA-05-4424 TCGA-05-4426 TCGA-05-4427 TCGA-05-4430 
        8.98        29.95        30.02        26.01        26.01        25.02 
TCGA-05-4432 TCGA-05-4433 TCGA-05-4434 TCGA-05-5420 TCGA-05-5423 TCGA-05-5425 
       25.02        24.00        15.02         1.02         4.96         2.96 
TCGA-05-5429 TCGA-05-5715 TCGA-35-3615 TCGA-35-4122 TCGA-35-4123 TCGA-35-5375 
        0.99         2.04         0.46         7.36         5.95         8.68 
TCGA-38-4625 TCGA-38-4626 TCGA-38-4627 TCGA-38-4628 TCGA-38-4629 TCGA-38-4630 
       47.61        85.32        37.71        49.02        28.37        35.28 
TCGA-38-4631 TCGA-38-4632 TCGA-38-6178 TCGA-44-2655 TCGA-44-2656 TCGA-44-2657 
       11.64        44.61         5.19        18.87        19.10        13.15 
TCGA-44-2661 TCGA-44-2662 TCGA-44-2665 TCGA-44-2666 TCGA-44-2668 TCGA-44-3396 
        3.39        15.78        13.15         3.19         8.09        10.22 
TCGA-44-3398 TCGA-44-3918 TCGA-44-3919 TCGA-44-4112 TCGA-44-5643 TCGA-44-5645 
        8.32         6.44         6.21         4.60         3.48         6.84 
TCGA-44-6144 TCGA-44-6145 TCGA-44-6146 TCGA-44-6147 TCGA-44-6148 TCGA-44-6774 
        0.30         3.35         9.93         7.76         3.12         5.42 
TCGA-44-6775 TCGA-44-6776 TCGA-44-6777 TCGA-44-6778 TCGA-44-6779 TCGA-49-4486 
        2.70        63.72        32.45        36.49        16.41        76.21 
TCGA-49-4487 TCGA-49-4488 TCGA-49-4490 TCGA-49-4494 TCGA-49-4501 TCGA-49-4505 
       28.11        28.57        12.66        35.54        46.72        14.07 
TCGA-49-4506 TCGA-49-4507 TCGA-49-4510 TCGA-49-4512 TCGA-49-4514 TCGA-49-6742 
       32.84         8.81        29.46        29.75        43.20        15.02 
TCGA-49-6743 TCGA-49-6744 TCGA-49-6745 TCGA-50-5044 TCGA-50-5045 TCGA-50-5049 
       12.13        12.99         4.93        20.48        71.47        48.82 
TCGA-50-5051 TCGA-50-5055 TCGA-50-5066 TCGA-50-5068 TCGA-50-5072 TCGA-50-5930 
       14.96        25.81         9.76        49.28         8.05         9.27 
TCGA-50-5931 TCGA-50-5932 TCGA-50-5933 TCGA-50-5935 TCGA-50-5936 TCGA-50-5939 
        8.78        35.87        77.88        21.47         8.45        15.12 
TCGA-50-5941 TCGA-50-5942 TCGA-50-5944 TCGA-50-5946 TCGA-50-6590 TCGA-50-6591 
        9.37         4.44        12.26        11.47        42.31         3.88 
TCGA-50-6592 TCGA-50-6593 TCGA-50-6594 TCGA-50-6595 TCGA-50-6597 TCGA-55-1592 
       25.51        11.05        12.16         6.21        33.37        23.05 
TCGA-55-1594 TCGA-55-1595 TCGA-55-1596 TCGA-55-5899 TCGA-55-6543 TCGA-55-6642 
       38.73        48.62        45.17         2.86         0.07        32.61 
TCGA-55-6712 TCGA-64-1677 TCGA-64-1678 TCGA-64-1680 TCGA-64-5774 TCGA-64-5775 
        0.79        20.65        39.09        37.02        83.84         0.10 
TCGA-64-5779 TCGA-64-5781 TCGA-64-5815 TCGA-67-3770 TCGA-67-3771 TCGA-67-3772 
       16.67        39.52         7.33         0.99         1.97         0.59 
TCGA-67-3773 TCGA-67-3774 TCGA-67-6215 TCGA-67-6216 TCGA-67-6217 TCGA-71-6725 
        2.04         0.59         0.89         0.69        13.87         2.01 
TCGA-73-4658 TCGA-73-4659 TCGA-73-4662 TCGA-73-4666 TCGA-73-4668 TCGA-73-4670 
       52.57        23.38        29.95        20.28        15.35         0.46 
TCGA-73-4675 TCGA-73-4676 TCGA-73-4677 TCGA-91-6828 TCGA-91-6829 TCGA-91-6831 
        1.32         4.01         1.25         1.22        41.33         1.28 
TCGA-91-6835 TCGA-91-6836 
        1.15         0.36 

  KRTAP19-6 MUTATED KRTAP19-6 WILD-TYPE 
              17.39                0.07 
  KRTAP19-6 MUTATED KRTAP19-6 WILD-TYPE 
              56.81               85.32 
  KRTAP19-6 MUTATED KRTAP19-6 WILD-TYPE 
              30.44               13.15 
[1] "17.4 - 56.8 (30.4)" "0.1 - 85.3 (13.2)" 
         TCGA-05-4249          TCGA-05-4250          TCGA-05-4382 
"KRTAP19-6 WILD-TYPE" "KRTAP19-6 WILD-TYPE" "KRTAP19-6 WILD-TYPE" 
         TCGA-05-4384          TCGA-05-4390          TCGA-05-4396 
"KRTAP19-6 WILD-TYPE" "KRTAP19-6 WILD-TYPE" "KRTAP19-6 WILD-TYPE" 
         TCGA-05-4397          TCGA-05-4398          TCGA-05-4402 
"KRTAP19-6 WILD-TYPE" "KRTAP19-6 WILD-TYPE" "KRTAP19-6 WILD-TYPE" 
         TCGA-05-4405          TCGA-05-4415          TCGA-05-4417 
"KRTAP19-6 WILD-TYPE" "KRTAP19-6 WILD-TYPE" "KRTAP19-6 WILD-TYPE" 
         TCGA-05-4418          TCGA-05-4420          TCGA-05-4424 
"KRTAP19-6 WILD-TYPE" "KRTAP19-6 WILD-TYPE" "KRTAP19-6 WILD-TYPE" 
         TCGA-05-4426          TCGA-05-4427          TCGA-05-4430 
"KRTAP19-6 WILD-TYPE" "KRTAP19-6 WILD-TYPE" "KRTAP19-6 WILD-TYPE" 
         TCGA-05-4432          TCGA-05-4433          TCGA-05-4434 
"KRTAP19-6 WILD-TYPE" "KRTAP19-6 WILD-TYPE" "KRTAP19-6 WILD-TYPE" 
         TCGA-05-5420          TCGA-05-5423          TCGA-05-5425 
"KRTAP19-6 WILD-TYPE" "KRTAP19-6 WILD-TYPE" "KRTAP19-6 WILD-TYPE" 
         TCGA-05-5429          TCGA-05-5715          TCGA-35-3615 
"KRTAP19-6 WILD-TYPE" "KRTAP19-6 WILD-TYPE" "KRTAP19-6 WILD-TYPE" 
         TCGA-35-4122          TCGA-35-4123          TCGA-35-5375 
"KRTAP19-6 WILD-TYPE" "KRTAP19-6 WILD-TYPE" "KRTAP19-6 WILD-TYPE" 
         TCGA-38-4625          TCGA-38-4626          TCGA-38-4627 
"KRTAP19-6 WILD-TYPE" "KRTAP19-6 WILD-TYPE" "KRTAP19-6 WILD-TYPE" 
         TCGA-38-4628          TCGA-38-4629          TCGA-38-4630 
"KRTAP19-6 WILD-TYPE" "KRTAP19-6 WILD-TYPE" "KRTAP19-6 WILD-TYPE" 
         TCGA-38-4631          TCGA-38-4632          TCGA-38-6178 
"KRTAP19-6 WILD-TYPE" "KRTAP19-6 WILD-TYPE" "KRTAP19-6 WILD-TYPE" 
         TCGA-44-2655          TCGA-44-2656          TCGA-44-2657 
"KRTAP19-6 WILD-TYPE" "KRTAP19-6 WILD-TYPE" "KRTAP19-6 WILD-TYPE" 
         TCGA-44-2659          TCGA-44-2661          TCGA-44-2662 
  "KRTAP19-6 MUTATED" "KRTAP19-6 WILD-TYPE" "KRTAP19-6 WILD-TYPE" 
         TCGA-44-2665          TCGA-44-2666          TCGA-44-2668 
"KRTAP19-6 WILD-TYPE" "KRTAP19-6 WILD-TYPE" "KRTAP19-6 WILD-TYPE" 
         TCGA-44-3396          TCGA-44-3398          TCGA-44-3918 
"KRTAP19-6 WILD-TYPE" "KRTAP19-6 WILD-TYPE" "KRTAP19-6 WILD-TYPE" 
         TCGA-44-3919          TCGA-44-4112          TCGA-44-5643 
"KRTAP19-6 WILD-TYPE" "KRTAP19-6 WILD-TYPE" "KRTAP19-6 WILD-TYPE" 
         TCGA-44-5645          TCGA-44-6144          TCGA-44-6145 
"KRTAP19-6 WILD-TYPE" "KRTAP19-6 WILD-TYPE" "KRTAP19-6 WILD-TYPE" 
         TCGA-44-6146          TCGA-44-6147          TCGA-44-6148 
"KRTAP19-6 WILD-TYPE" "KRTAP19-6 WILD-TYPE" "KRTAP19-6 WILD-TYPE" 
         TCGA-44-6774          TCGA-44-6775          TCGA-44-6776 
"KRTAP19-6 WILD-TYPE" "KRTAP19-6 WILD-TYPE" "KRTAP19-6 WILD-TYPE" 
         TCGA-44-6777          TCGA-44-6778          TCGA-44-6779 
"KRTAP19-6 WILD-TYPE" "KRTAP19-6 WILD-TYPE" "KRTAP19-6 WILD-TYPE" 
         TCGA-49-4486          TCGA-49-4487          TCGA-49-4488 
"KRTAP19-6 WILD-TYPE" "KRTAP19-6 WILD-TYPE" "KRTAP19-6 WILD-TYPE" 
         TCGA-49-4490          TCGA-49-4494          TCGA-49-4501 
"KRTAP19-6 WILD-TYPE" "KRTAP19-6 WILD-TYPE" "KRTAP19-6 WILD-TYPE" 
         TCGA-49-4505          TCGA-49-4506          TCGA-49-4507 
"KRTAP19-6 WILD-TYPE" "KRTAP19-6 WILD-TYPE" "KRTAP19-6 WILD-TYPE" 
         TCGA-49-4510          TCGA-49-4512          TCGA-49-4514 
"KRTAP19-6 WILD-TYPE" "KRTAP19-6 WILD-TYPE" "KRTAP19-6 WILD-TYPE" 
         TCGA-49-6742          TCGA-49-6743          TCGA-49-6744 
"KRTAP19-6 WILD-TYPE" "KRTAP19-6 WILD-TYPE" "KRTAP19-6 WILD-TYPE" 
         TCGA-49-6745          TCGA-50-5044          TCGA-50-5045 
"KRTAP19-6 WILD-TYPE" "KRTAP19-6 WILD-TYPE" "KRTAP19-6 WILD-TYPE" 
         TCGA-50-5049          TCGA-50-5051          TCGA-50-5055 
"KRTAP19-6 WILD-TYPE" "KRTAP19-6 WILD-TYPE" "KRTAP19-6 WILD-TYPE" 
         TCGA-50-5066          TCGA-50-5068          TCGA-50-5072 
"KRTAP19-6 WILD-TYPE" "KRTAP19-6 WILD-TYPE" "KRTAP19-6 WILD-TYPE" 
         TCGA-50-5930          TCGA-50-5931          TCGA-50-5932 
"KRTAP19-6 WILD-TYPE" "KRTAP19-6 WILD-TYPE" "KRTAP19-6 WILD-TYPE" 
         TCGA-50-5933          TCGA-50-5935          TCGA-50-5936 
"KRTAP19-6 WILD-TYPE" "KRTAP19-6 WILD-TYPE" "KRTAP19-6 WILD-TYPE" 
         TCGA-50-5939          TCGA-50-5941          TCGA-50-5942 
"KRTAP19-6 WILD-TYPE" "KRTAP19-6 WILD-TYPE" "KRTAP19-6 WILD-TYPE" 
         TCGA-50-5944          TCGA-50-5946          TCGA-50-6590 
"KRTAP19-6 WILD-TYPE" "KRTAP19-6 WILD-TYPE" "KRTAP19-6 WILD-TYPE" 
         TCGA-50-6591          TCGA-50-6592          TCGA-50-6593 
"KRTAP19-6 WILD-TYPE" "KRTAP19-6 WILD-TYPE" "KRTAP19-6 WILD-TYPE" 
         TCGA-50-6594          TCGA-50-6595          TCGA-50-6597 
"KRTAP19-6 WILD-TYPE" "KRTAP19-6 WILD-TYPE" "KRTAP19-6 WILD-TYPE" 
         TCGA-55-1592          TCGA-55-1594          TCGA-55-1595 
"KRTAP19-6 WILD-TYPE" "KRTAP19-6 WILD-TYPE" "KRTAP19-6 WILD-TYPE" 
         TCGA-55-1596          TCGA-55-5899          TCGA-55-6543 
"KRTAP19-6 WILD-TYPE" "KRTAP19-6 WILD-TYPE" "KRTAP19-6 WILD-TYPE" 
         TCGA-55-6642          TCGA-55-6712          TCGA-64-1676 
"KRTAP19-6 WILD-TYPE" "KRTAP19-6 WILD-TYPE"   "KRTAP19-6 MUTATED" 
         TCGA-64-1677          TCGA-64-1678          TCGA-64-1680 
"KRTAP19-6 WILD-TYPE" "KRTAP19-6 WILD-TYPE" "KRTAP19-6 WILD-TYPE" 
         TCGA-64-5774          TCGA-64-5775          TCGA-64-5778 
"KRTAP19-6 WILD-TYPE" "KRTAP19-6 WILD-TYPE"   "KRTAP19-6 MUTATED" 
         TCGA-64-5779          TCGA-64-5781          TCGA-64-5815 
"KRTAP19-6 WILD-TYPE" "KRTAP19-6 WILD-TYPE" "KRTAP19-6 WILD-TYPE" 
         TCGA-67-3770          TCGA-67-3771          TCGA-67-3772 
"KRTAP19-6 WILD-TYPE" "KRTAP19-6 WILD-TYPE" "KRTAP19-6 WILD-TYPE" 
         TCGA-67-3773          TCGA-67-3774          TCGA-67-6215 
"KRTAP19-6 WILD-TYPE" "KRTAP19-6 WILD-TYPE" "KRTAP19-6 WILD-TYPE" 
         TCGA-67-6216          TCGA-67-6217          TCGA-71-6725 
"KRTAP19-6 WILD-TYPE" "KRTAP19-6 WILD-TYPE" "KRTAP19-6 WILD-TYPE" 
         TCGA-73-4658          TCGA-73-4659          TCGA-73-4662 
"KRTAP19-6 WILD-TYPE" "KRTAP19-6 WILD-TYPE" "KRTAP19-6 WILD-TYPE" 
         TCGA-73-4666          TCGA-73-4668          TCGA-73-4670 
"KRTAP19-6 WILD-TYPE" "KRTAP19-6 WILD-TYPE" "KRTAP19-6 WILD-TYPE" 
         TCGA-73-4675          TCGA-73-4676          TCGA-73-4677 
"KRTAP19-6 WILD-TYPE" "KRTAP19-6 WILD-TYPE" "KRTAP19-6 WILD-TYPE" 
         TCGA-91-6828          TCGA-91-6829          TCGA-91-6831 
"KRTAP19-6 WILD-TYPE" "KRTAP19-6 WILD-TYPE" "KRTAP19-6 WILD-TYPE" 
         TCGA-91-6835          TCGA-91-6836 
"KRTAP19-6 WILD-TYPE" "KRTAP19-6 WILD-TYPE" 
         TCGA-05-4249          TCGA-05-4250          TCGA-05-4382 
"KRTAP19-6 WILD-TYPE" "KRTAP19-6 WILD-TYPE" "KRTAP19-6 WILD-TYPE" 
         TCGA-05-4384          TCGA-05-4390          TCGA-05-4396 
"KRTAP19-6 WILD-TYPE" "KRTAP19-6 WILD-TYPE" "KRTAP19-6 WILD-TYPE" 
         TCGA-05-4397          TCGA-05-4398          TCGA-05-4402 
"KRTAP19-6 WILD-TYPE" "KRTAP19-6 WILD-TYPE" "KRTAP19-6 WILD-TYPE" 
         TCGA-05-4405          TCGA-05-4415          TCGA-05-4417 
"KRTAP19-6 WILD-TYPE" "KRTAP19-6 WILD-TYPE" "KRTAP19-6 WILD-TYPE" 
         TCGA-05-4418          TCGA-05-4420          TCGA-05-4424 
"KRTAP19-6 WILD-TYPE" "KRTAP19-6 WILD-TYPE" "KRTAP19-6 WILD-TYPE" 
         TCGA-05-4426          TCGA-05-4427          TCGA-05-4430 
"KRTAP19-6 WILD-TYPE" "KRTAP19-6 WILD-TYPE" "KRTAP19-6 WILD-TYPE" 
         TCGA-05-4432          TCGA-05-4433          TCGA-05-4434 
"KRTAP19-6 WILD-TYPE" "KRTAP19-6 WILD-TYPE" "KRTAP19-6 WILD-TYPE" 
         TCGA-05-5420          TCGA-05-5423          TCGA-05-5425 
"KRTAP19-6 WILD-TYPE" "KRTAP19-6 WILD-TYPE" "KRTAP19-6 WILD-TYPE" 
         TCGA-05-5429          TCGA-05-5715          TCGA-35-3615 
"KRTAP19-6 WILD-TYPE" "KRTAP19-6 WILD-TYPE" "KRTAP19-6 WILD-TYPE" 
         TCGA-35-4122          TCGA-35-4123          TCGA-35-5375 
"KRTAP19-6 WILD-TYPE" "KRTAP19-6 WILD-TYPE" "KRTAP19-6 WILD-TYPE" 
         TCGA-38-4625          TCGA-38-4626          TCGA-38-4627 
"KRTAP19-6 WILD-TYPE" "KRTAP19-6 WILD-TYPE" "KRTAP19-6 WILD-TYPE" 
         TCGA-38-4628          TCGA-38-4629          TCGA-38-4630 
"KRTAP19-6 WILD-TYPE" "KRTAP19-6 WILD-TYPE" "KRTAP19-6 WILD-TYPE" 
         TCGA-38-4631          TCGA-38-4632          TCGA-38-6178 
"KRTAP19-6 WILD-TYPE" "KRTAP19-6 WILD-TYPE" "KRTAP19-6 WILD-TYPE" 
         TCGA-44-2655          TCGA-44-2656          TCGA-44-2657 
"KRTAP19-6 WILD-TYPE" "KRTAP19-6 WILD-TYPE" "KRTAP19-6 WILD-TYPE" 
         TCGA-44-2659          TCGA-44-2661          TCGA-44-2662 
  "KRTAP19-6 MUTATED" "KRTAP19-6 WILD-TYPE" "KRTAP19-6 WILD-TYPE" 
         TCGA-44-2665          TCGA-44-2666          TCGA-44-2668 
"KRTAP19-6 WILD-TYPE" "KRTAP19-6 WILD-TYPE" "KRTAP19-6 WILD-TYPE" 
         TCGA-44-3396          TCGA-44-3398          TCGA-44-3918 
"KRTAP19-6 WILD-TYPE" "KRTAP19-6 WILD-TYPE" "KRTAP19-6 WILD-TYPE" 
         TCGA-44-3919          TCGA-44-4112          TCGA-44-5643 
"KRTAP19-6 WILD-TYPE" "KRTAP19-6 WILD-TYPE" "KRTAP19-6 WILD-TYPE" 
         TCGA-44-5645          TCGA-44-6144          TCGA-44-6145 
"KRTAP19-6 WILD-TYPE" "KRTAP19-6 WILD-TYPE" "KRTAP19-6 WILD-TYPE" 
         TCGA-44-6146          TCGA-44-6147          TCGA-44-6148 
"KRTAP19-6 WILD-TYPE" "KRTAP19-6 WILD-TYPE" "KRTAP19-6 WILD-TYPE" 
         TCGA-44-6774          TCGA-44-6775          TCGA-44-6776 
"KRTAP19-6 WILD-TYPE" "KRTAP19-6 WILD-TYPE" "KRTAP19-6 WILD-TYPE" 
         TCGA-44-6777          TCGA-44-6778          TCGA-44-6779 
"KRTAP19-6 WILD-TYPE" "KRTAP19-6 WILD-TYPE" "KRTAP19-6 WILD-TYPE" 
         TCGA-49-4486          TCGA-49-4487          TCGA-49-4488 
"KRTAP19-6 WILD-TYPE" "KRTAP19-6 WILD-TYPE" "KRTAP19-6 WILD-TYPE" 
         TCGA-49-4490          TCGA-49-4494          TCGA-49-4501 
"KRTAP19-6 WILD-TYPE" "KRTAP19-6 WILD-TYPE" "KRTAP19-6 WILD-TYPE" 
         TCGA-49-4505          TCGA-49-4506          TCGA-49-4507 
"KRTAP19-6 WILD-TYPE" "KRTAP19-6 WILD-TYPE" "KRTAP19-6 WILD-TYPE" 
         TCGA-49-4510          TCGA-49-4512          TCGA-49-4514 
"KRTAP19-6 WILD-TYPE" "KRTAP19-6 WILD-TYPE" "KRTAP19-6 WILD-TYPE" 
         TCGA-49-6742          TCGA-49-6743          TCGA-49-6744 
"KRTAP19-6 WILD-TYPE" "KRTAP19-6 WILD-TYPE" "KRTAP19-6 WILD-TYPE" 
         TCGA-49-6745          TCGA-50-5044          TCGA-50-5045 
"KRTAP19-6 WILD-TYPE" "KRTAP19-6 WILD-TYPE" "KRTAP19-6 WILD-TYPE" 
         TCGA-50-5049          TCGA-50-5051          TCGA-50-5055 
"KRTAP19-6 WILD-TYPE" "KRTAP19-6 WILD-TYPE" "KRTAP19-6 WILD-TYPE" 
         TCGA-50-5066          TCGA-50-5068          TCGA-50-5072 
"KRTAP19-6 WILD-TYPE" "KRTAP19-6 WILD-TYPE" "KRTAP19-6 WILD-TYPE" 
         TCGA-50-5930          TCGA-50-5931          TCGA-50-5932 
"KRTAP19-6 WILD-TYPE" "KRTAP19-6 WILD-TYPE" "KRTAP19-6 WILD-TYPE" 
         TCGA-50-5933          TCGA-50-5935          TCGA-50-5936 
"KRTAP19-6 WILD-TYPE" "KRTAP19-6 WILD-TYPE" "KRTAP19-6 WILD-TYPE" 
         TCGA-50-5939          TCGA-50-5941          TCGA-50-5942 
"KRTAP19-6 WILD-TYPE" "KRTAP19-6 WILD-TYPE" "KRTAP19-6 WILD-TYPE" 
         TCGA-50-5944          TCGA-50-5946          TCGA-50-6590 
"KRTAP19-6 WILD-TYPE" "KRTAP19-6 WILD-TYPE" "KRTAP19-6 WILD-TYPE" 
         TCGA-50-6591          TCGA-50-6592          TCGA-50-6593 
"KRTAP19-6 WILD-TYPE" "KRTAP19-6 WILD-TYPE" "KRTAP19-6 WILD-TYPE" 
         TCGA-50-6594          TCGA-50-6595          TCGA-50-6597 
"KRTAP19-6 WILD-TYPE" "KRTAP19-6 WILD-TYPE" "KRTAP19-6 WILD-TYPE" 
         TCGA-55-1592          TCGA-55-1594          TCGA-55-1595 
"KRTAP19-6 WILD-TYPE" "KRTAP19-6 WILD-TYPE" "KRTAP19-6 WILD-TYPE" 
         TCGA-55-1596          TCGA-55-5899          TCGA-55-6543 
"KRTAP19-6 WILD-TYPE" "KRTAP19-6 WILD-TYPE" "KRTAP19-6 WILD-TYPE" 
         TCGA-55-6642          TCGA-55-6712          TCGA-64-1676 
"KRTAP19-6 WILD-TYPE" "KRTAP19-6 WILD-TYPE"   "KRTAP19-6 MUTATED" 
         TCGA-64-1677          TCGA-64-1678          TCGA-64-1680 
"KRTAP19-6 WILD-TYPE" "KRTAP19-6 WILD-TYPE" "KRTAP19-6 WILD-TYPE" 
         TCGA-64-5774          TCGA-64-5775          TCGA-64-5778 
"KRTAP19-6 WILD-TYPE" "KRTAP19-6 WILD-TYPE"   "KRTAP19-6 MUTATED" 
         TCGA-64-5779          TCGA-64-5781          TCGA-64-5815 
"KRTAP19-6 WILD-TYPE" "KRTAP19-6 WILD-TYPE" "KRTAP19-6 WILD-TYPE" 
         TCGA-67-3770          TCGA-67-3771          TCGA-67-3772 
"KRTAP19-6 WILD-TYPE" "KRTAP19-6 WILD-TYPE" "KRTAP19-6 WILD-TYPE" 
         TCGA-67-3773          TCGA-67-3774          TCGA-67-6215 
"KRTAP19-6 WILD-TYPE" "KRTAP19-6 WILD-TYPE" "KRTAP19-6 WILD-TYPE" 
         TCGA-67-6216          TCGA-67-6217          TCGA-71-6725 
"KRTAP19-6 WILD-TYPE" "KRTAP19-6 WILD-TYPE" "KRTAP19-6 WILD-TYPE" 
         TCGA-73-4658          TCGA-73-4659          TCGA-73-4662 
"KRTAP19-6 WILD-TYPE" "KRTAP19-6 WILD-TYPE" "KRTAP19-6 WILD-TYPE" 
         TCGA-73-4666          TCGA-73-4668          TCGA-73-4670 
"KRTAP19-6 WILD-TYPE" "KRTAP19-6 WILD-TYPE" "KRTAP19-6 WILD-TYPE" 
         TCGA-73-4675          TCGA-73-4676          TCGA-73-4677 
"KRTAP19-6 WILD-TYPE" "KRTAP19-6 WILD-TYPE" "KRTAP19-6 WILD-TYPE" 
         TCGA-91-6828          TCGA-91-6829          TCGA-91-6831 
"KRTAP19-6 WILD-TYPE" "KRTAP19-6 WILD-TYPE" "KRTAP19-6 WILD-TYPE" 
         TCGA-91-6835          TCGA-91-6836 
"KRTAP19-6 WILD-TYPE" "KRTAP19-6 WILD-TYPE" 
         TCGA-05-4249          TCGA-05-4250          TCGA-05-4382 
"KRTAP19-6 WILD-TYPE" "KRTAP19-6 WILD-TYPE" "KRTAP19-6 WILD-TYPE" 
         TCGA-05-4384          TCGA-05-4390          TCGA-05-4396 
"KRTAP19-6 WILD-TYPE" "KRTAP19-6 WILD-TYPE" "KRTAP19-6 WILD-TYPE" 
         TCGA-05-4397          TCGA-05-4398          TCGA-05-4402 
"KRTAP19-6 WILD-TYPE" "KRTAP19-6 WILD-TYPE" "KRTAP19-6 WILD-TYPE" 
         TCGA-05-4405          TCGA-05-4415          TCGA-05-4417 
"KRTAP19-6 WILD-TYPE" "KRTAP19-6 WILD-TYPE" "KRTAP19-6 WILD-TYPE" 
         TCGA-05-4418          TCGA-05-4420          TCGA-05-4424 
"KRTAP19-6 WILD-TYPE" "KRTAP19-6 WILD-TYPE" "KRTAP19-6 WILD-TYPE" 
         TCGA-05-4426          TCGA-05-4427          TCGA-05-4430 
"KRTAP19-6 WILD-TYPE" "KRTAP19-6 WILD-TYPE" "KRTAP19-6 WILD-TYPE" 
         TCGA-05-4432          TCGA-05-4433          TCGA-05-4434 
"KRTAP19-6 WILD-TYPE" "KRTAP19-6 WILD-TYPE" "KRTAP19-6 WILD-TYPE" 
         TCGA-05-5420          TCGA-05-5423          TCGA-05-5425 
"KRTAP19-6 WILD-TYPE" "KRTAP19-6 WILD-TYPE" "KRTAP19-6 WILD-TYPE" 
         TCGA-05-5429          TCGA-05-5715          TCGA-35-3615 
"KRTAP19-6 WILD-TYPE" "KRTAP19-6 WILD-TYPE" "KRTAP19-6 WILD-TYPE" 
         TCGA-35-4122          TCGA-35-4123          TCGA-35-5375 
"KRTAP19-6 WILD-TYPE" "KRTAP19-6 WILD-TYPE" "KRTAP19-6 WILD-TYPE" 
         TCGA-38-4625          TCGA-38-4626          TCGA-38-4627 
"KRTAP19-6 WILD-TYPE" "KRTAP19-6 WILD-TYPE" "KRTAP19-6 WILD-TYPE" 
         TCGA-38-4628          TCGA-38-4629          TCGA-38-4630 
"KRTAP19-6 WILD-TYPE" "KRTAP19-6 WILD-TYPE" "KRTAP19-6 WILD-TYPE" 
         TCGA-38-4631          TCGA-38-4632          TCGA-38-6178 
"KRTAP19-6 WILD-TYPE" "KRTAP19-6 WILD-TYPE" "KRTAP19-6 WILD-TYPE" 
         TCGA-44-2655          TCGA-44-2656          TCGA-44-2657 
"KRTAP19-6 WILD-TYPE" "KRTAP19-6 WILD-TYPE" "KRTAP19-6 WILD-TYPE" 
         TCGA-44-2659          TCGA-44-2661          TCGA-44-2662 
  "KRTAP19-6 MUTATED" "KRTAP19-6 WILD-TYPE" "KRTAP19-6 WILD-TYPE" 
         TCGA-44-2665          TCGA-44-2666          TCGA-44-2668 
"KRTAP19-6 WILD-TYPE" "KRTAP19-6 WILD-TYPE" "KRTAP19-6 WILD-TYPE" 
         TCGA-44-3396          TCGA-44-3398          TCGA-44-3918 
"KRTAP19-6 WILD-TYPE" "KRTAP19-6 WILD-TYPE" "KRTAP19-6 WILD-TYPE" 
         TCGA-44-3919          TCGA-44-4112          TCGA-44-5643 
"KRTAP19-6 WILD-TYPE" "KRTAP19-6 WILD-TYPE" "KRTAP19-6 WILD-TYPE" 
         TCGA-44-5645          TCGA-44-6144          TCGA-44-6145 
"KRTAP19-6 WILD-TYPE" "KRTAP19-6 WILD-TYPE" "KRTAP19-6 WILD-TYPE" 
         TCGA-44-6146          TCGA-44-6147          TCGA-44-6148 
"KRTAP19-6 WILD-TYPE" "KRTAP19-6 WILD-TYPE" "KRTAP19-6 WILD-TYPE" 
         TCGA-44-6774          TCGA-44-6775          TCGA-44-6776 
"KRTAP19-6 WILD-TYPE" "KRTAP19-6 WILD-TYPE" "KRTAP19-6 WILD-TYPE" 
         TCGA-44-6777          TCGA-44-6778          TCGA-44-6779 
"KRTAP19-6 WILD-TYPE" "KRTAP19-6 WILD-TYPE" "KRTAP19-6 WILD-TYPE" 
         TCGA-49-4486          TCGA-49-4487          TCGA-49-4488 
"KRTAP19-6 WILD-TYPE" "KRTAP19-6 WILD-TYPE" "KRTAP19-6 WILD-TYPE" 
         TCGA-49-4490          TCGA-49-4494          TCGA-49-4501 
"KRTAP19-6 WILD-TYPE" "KRTAP19-6 WILD-TYPE" "KRTAP19-6 WILD-TYPE" 
         TCGA-49-4505          TCGA-49-4506          TCGA-49-4507 
"KRTAP19-6 WILD-TYPE" "KRTAP19-6 WILD-TYPE" "KRTAP19-6 WILD-TYPE" 
         TCGA-49-4510          TCGA-49-4512          TCGA-49-4514 
"KRTAP19-6 WILD-TYPE" "KRTAP19-6 WILD-TYPE" "KRTAP19-6 WILD-TYPE" 
         TCGA-49-6742          TCGA-49-6743          TCGA-49-6744 
"KRTAP19-6 WILD-TYPE" "KRTAP19-6 WILD-TYPE" "KRTAP19-6 WILD-TYPE" 
         TCGA-49-6745          TCGA-50-5044          TCGA-50-5045 
"KRTAP19-6 WILD-TYPE" "KRTAP19-6 WILD-TYPE" "KRTAP19-6 WILD-TYPE" 
         TCGA-50-5049          TCGA-50-5051          TCGA-50-5055 
"KRTAP19-6 WILD-TYPE" "KRTAP19-6 WILD-TYPE" "KRTAP19-6 WILD-TYPE" 
         TCGA-50-5066          TCGA-50-5068          TCGA-50-5072 
"KRTAP19-6 WILD-TYPE" "KRTAP19-6 WILD-TYPE" "KRTAP19-6 WILD-TYPE" 
         TCGA-50-5930          TCGA-50-5931          TCGA-50-5932 
"KRTAP19-6 WILD-TYPE" "KRTAP19-6 WILD-TYPE" "KRTAP19-6 WILD-TYPE" 
         TCGA-50-5933          TCGA-50-5935          TCGA-50-5936 
"KRTAP19-6 WILD-TYPE" "KRTAP19-6 WILD-TYPE" "KRTAP19-6 WILD-TYPE" 
         TCGA-50-5939          TCGA-50-5941          TCGA-50-5942 
"KRTAP19-6 WILD-TYPE" "KRTAP19-6 WILD-TYPE" "KRTAP19-6 WILD-TYPE" 
         TCGA-50-5944          TCGA-50-5946          TCGA-50-6590 
"KRTAP19-6 WILD-TYPE" "KRTAP19-6 WILD-TYPE" "KRTAP19-6 WILD-TYPE" 
         TCGA-50-6591          TCGA-50-6592          TCGA-50-6593 
"KRTAP19-6 WILD-TYPE" "KRTAP19-6 WILD-TYPE" "KRTAP19-6 WILD-TYPE" 
         TCGA-50-6594          TCGA-50-6595          TCGA-50-6597 
"KRTAP19-6 WILD-TYPE" "KRTAP19-6 WILD-TYPE" "KRTAP19-6 WILD-TYPE" 
         TCGA-55-1592          TCGA-55-1594          TCGA-55-1595 
"KRTAP19-6 WILD-TYPE" "KRTAP19-6 WILD-TYPE" "KRTAP19-6 WILD-TYPE" 
         TCGA-55-1596          TCGA-55-5899          TCGA-55-6543 
"KRTAP19-6 WILD-TYPE" "KRTAP19-6 WILD-TYPE" "KRTAP19-6 WILD-TYPE" 
         TCGA-55-6642          TCGA-55-6712          TCGA-64-1676 
"KRTAP19-6 WILD-TYPE" "KRTAP19-6 WILD-TYPE"   "KRTAP19-6 MUTATED" 
         TCGA-64-1677          TCGA-64-1678          TCGA-64-1680 
"KRTAP19-6 WILD-TYPE" "KRTAP19-6 WILD-TYPE" "KRTAP19-6 WILD-TYPE" 
         TCGA-64-5774          TCGA-64-5775          TCGA-64-5778 
"KRTAP19-6 WILD-TYPE" "KRTAP19-6 WILD-TYPE"   "KRTAP19-6 MUTATED" 
         TCGA-64-5779          TCGA-64-5781          TCGA-64-5815 
"KRTAP19-6 WILD-TYPE" "KRTAP19-6 WILD-TYPE" "KRTAP19-6 WILD-TYPE" 
         TCGA-67-3770          TCGA-67-3771          TCGA-67-3772 
"KRTAP19-6 WILD-TYPE" "KRTAP19-6 WILD-TYPE" "KRTAP19-6 WILD-TYPE" 
         TCGA-67-3773          TCGA-67-3774          TCGA-67-6215 
"KRTAP19-6 WILD-TYPE" "KRTAP19-6 WILD-TYPE" "KRTAP19-6 WILD-TYPE" 
         TCGA-67-6216          TCGA-67-6217          TCGA-71-6725 
"KRTAP19-6 WILD-TYPE" "KRTAP19-6 WILD-TYPE" "KRTAP19-6 WILD-TYPE" 
         TCGA-73-4658          TCGA-73-4659          TCGA-73-4662 
"KRTAP19-6 WILD-TYPE" "KRTAP19-6 WILD-TYPE" "KRTAP19-6 WILD-TYPE" 
         TCGA-73-4666          TCGA-73-4668          TCGA-73-4670 
"KRTAP19-6 WILD-TYPE" "KRTAP19-6 WILD-TYPE" "KRTAP19-6 WILD-TYPE" 
         TCGA-73-4675          TCGA-73-4676          TCGA-73-4677 
"KRTAP19-6 WILD-TYPE" "KRTAP19-6 WILD-TYPE" "KRTAP19-6 WILD-TYPE" 
         TCGA-91-6828          TCGA-91-6829          TCGA-91-6831 
"KRTAP19-6 WILD-TYPE" "KRTAP19-6 WILD-TYPE" "KRTAP19-6 WILD-TYPE" 
         TCGA-91-6835          TCGA-91-6836 
"KRTAP19-6 WILD-TYPE" "KRTAP19-6 WILD-TYPE" 
[1] "hr="     "2.6e+07"
D66V2, continuous
D66V3, binary
[1] "tbl2"
                     cls
clus                  [,1] [,2]
  KRTAP19-6 MUTATED      1    3
  KRTAP19-6 WILD-TYPE   92   76
        clus
vv       KRTAP19-6 MUTATED KRTAP19-6 WILD-TYPE
  FEMALE                 1                  92
  MALE                   3                  76
D66V4, continuous
[1] "Remove cluster labels:" "KRTAP19-6 MUTATED"     
clus
  KRTAP19-6 MUTATED KRTAP19-6 WILD-TYPE 
                  1                  11 
         TCGA-35-4122          TCGA-35-4123          TCGA-35-5375 
"KRTAP19-6 WILD-TYPE" "KRTAP19-6 WILD-TYPE" "KRTAP19-6 WILD-TYPE" 
         TCGA-64-1677          TCGA-71-6725          TCGA-73-4659 
"KRTAP19-6 WILD-TYPE" "KRTAP19-6 WILD-TYPE" "KRTAP19-6 WILD-TYPE" 
         TCGA-73-4662          TCGA-73-4666          TCGA-73-4668 
"KRTAP19-6 WILD-TYPE" "KRTAP19-6 WILD-TYPE" "KRTAP19-6 WILD-TYPE" 
         TCGA-73-4676          TCGA-75-5122 
"KRTAP19-6 WILD-TYPE" "KRTAP19-6 WILD-TYPE" 
D66V5, multiclass
D66V6, multiclass
    clus
vv   KRTAP19-6 MUTATED KRTAP19-6 WILD-TYPE
  T1                 2                  39
  T2                 2                 106
  T3                 0                  14
  T4                 0                   8
D66V7, multiclass
       clus
vv      KRTAP19-6 MUTATED KRTAP19-6 WILD-TYPE
  N0                    3                  92
  N1                    1                  36
  N2+N3                 0                  35
D66V8, multiclass
    clus
vv   KRTAP19-6 MUTATED KRTAP19-6 WILD-TYPE
  M0                 4                 133
  M1                 0                   9
  MX                 0                  22
D66V9, multiclass
     clus
vv    KRTAP19-6 MUTATED KRTAP19-6 WILD-TYPE
  I                   3                  85
  II                  1                  32
  III                 0                  39
  IV                  0                   9
D66V10, binary
[1] "tbl2"
                     cls
clus                  [,1] [,2]
  KRTAP19-6 MUTATED      0    4
  KRTAP19-6 WILD-TYPE   16  152
     clus
vv    KRTAP19-6 MUTATED KRTAP19-6 WILD-TYPE
  NO                  0                  16
  YES                 4                 152
D66V11, continuous
D66V12, continuous
D66V13, multiclass
                                             clus
vv                                            KRTAP19-6 MUTATED
  CURRENT REFORMED SMOKER FOR < OR = 15 YEARS                 3
  CURRENT REFORMED SMOKER FOR > 15 YEARS                      0
  CURRENT SMOKER                                              1
  LIFELONG NON-SMOKER                                         0
                                             clus
vv                                            KRTAP19-6 WILD-TYPE
  CURRENT REFORMED SMOKER FOR < OR = 15 YEARS                  59
  CURRENT REFORMED SMOKER FOR > 15 YEARS                       46
  CURRENT SMOKER                                               27
  LIFELONG NON-SMOKER                                          24
D66V14, continuous

Clustering(67) Variable = OR5F1 MUTATION ANALYSIS
D67V1, survival
                 sevent
clus2              0  1
  OR5F1 MUTATED    8  2
  OR5F1 WILD-TYPE 91 48
  OR5F1 MUTATED OR5F1 WILD-TYPE 
             10             139 
  OR5F1 MUTATED OR5F1 WILD-TYPE 
              2              48 
$`OR5F1 MUTATED`
TCGA-05-4396 TCGA-05-4427 TCGA-35-4122 TCGA-44-2659 TCGA-44-4112 TCGA-49-4514 
        9.96        26.01         7.36        17.39         4.60        43.20 
TCGA-50-5049 TCGA-50-6590 TCGA-64-1678 TCGA-64-5781 
       48.82        42.31        39.09        39.52 

$`OR5F1 WILD-TYPE`
TCGA-05-4249 TCGA-05-4250 TCGA-05-4382 TCGA-05-4384 TCGA-05-4390 TCGA-05-4397 
       38.07         3.98        19.92        14.01        37.02        24.03 
TCGA-05-4398 TCGA-05-4402 TCGA-05-4405 TCGA-05-4415 TCGA-05-4417 TCGA-05-4418 
       47.05         8.02        20.05         2.96        14.93         8.98 
TCGA-05-4420 TCGA-05-4424 TCGA-05-4426 TCGA-05-4430 TCGA-05-4432 TCGA-05-4433 
       29.95        30.02        26.01        25.02        25.02        24.00 
TCGA-05-4434 TCGA-05-5420 TCGA-05-5423 TCGA-05-5425 TCGA-05-5429 TCGA-05-5715 
       15.02         1.02         4.96         2.96         0.99         2.04 
TCGA-35-3615 TCGA-35-4123 TCGA-35-5375 TCGA-38-4625 TCGA-38-4626 TCGA-38-4627 
        0.46         5.95         8.68        47.61        85.32        37.71 
TCGA-38-4628 TCGA-38-4629 TCGA-38-4630 TCGA-38-4631 TCGA-38-4632 TCGA-38-6178 
       49.02        28.37        35.28        11.64        44.61         5.19 
TCGA-44-2655 TCGA-44-2656 TCGA-44-2657 TCGA-44-2661 TCGA-44-2662 TCGA-44-2665 
       18.87        19.10        13.15         3.39        15.78        13.15 
TCGA-44-2666 TCGA-44-2668 TCGA-44-3396 TCGA-44-3398 TCGA-44-3918 TCGA-44-3919 
        3.19         8.09        10.22         8.32         6.44         6.21 
TCGA-44-5643 TCGA-44-5645 TCGA-44-6144 TCGA-44-6145 TCGA-44-6146 TCGA-44-6147 
        3.48         6.84         0.30         3.35         9.93         7.76 
TCGA-44-6148 TCGA-44-6774 TCGA-44-6775 TCGA-44-6776 TCGA-44-6777 TCGA-44-6778 
        3.12         5.42         2.70        63.72        32.45        36.49 
TCGA-44-6779 TCGA-49-4486 TCGA-49-4487 TCGA-49-4488 TCGA-49-4490 TCGA-49-4494 
       16.41        76.21        28.11        28.57        12.66        35.54 
TCGA-49-4501 TCGA-49-4505 TCGA-49-4506 TCGA-49-4507 TCGA-49-4510 TCGA-49-4512 
       46.72        14.07        32.84         8.81        29.46        29.75 
TCGA-49-6742 TCGA-49-6743 TCGA-49-6744 TCGA-49-6745 TCGA-50-5044 TCGA-50-5045 
       15.02        12.13        12.99         4.93        20.48        71.47 
TCGA-50-5051 TCGA-50-5055 TCGA-50-5066 TCGA-50-5068 TCGA-50-5072 TCGA-50-5930 
       14.96        25.81         9.76        49.28         8.05         9.27 
TCGA-50-5931 TCGA-50-5932 TCGA-50-5933 TCGA-50-5935 TCGA-50-5936 TCGA-50-5939 
        8.78        35.87        77.88        21.47         8.45        15.12 
TCGA-50-5941 TCGA-50-5942 TCGA-50-5944 TCGA-50-5946 TCGA-50-6591 TCGA-50-6592 
        9.37         4.44        12.26        11.47         3.88        25.51 
TCGA-50-6593 TCGA-50-6594 TCGA-50-6595 TCGA-50-6597 TCGA-55-1592 TCGA-55-1594 
       11.05        12.16         6.21        33.37        23.05        38.73 
TCGA-55-1595 TCGA-55-1596 TCGA-55-5899 TCGA-55-6543 TCGA-55-6642 TCGA-55-6712 
       48.62        45.17         2.86         0.07        32.61         0.79 
TCGA-64-1676 TCGA-64-1677 TCGA-64-1680 TCGA-64-5774 TCGA-64-5775 TCGA-64-5778 
       56.81        20.65        37.02        83.84         0.10        30.44 
TCGA-64-5779 TCGA-64-5815 TCGA-67-3770 TCGA-67-3771 TCGA-67-3772 TCGA-67-3773 
       16.67         7.33         0.99         1.97         0.59         2.04 
TCGA-67-3774 TCGA-67-6215 TCGA-67-6216 TCGA-67-6217 TCGA-71-6725 TCGA-73-4658 
        0.59         0.89         0.69        13.87         2.01        52.57 
TCGA-73-4659 TCGA-73-4662 TCGA-73-4666 TCGA-73-4668 TCGA-73-4670 TCGA-73-4675 
       23.38        29.95        20.28        15.35         0.46         1.32 
TCGA-73-4676 TCGA-73-4677 TCGA-91-6828 TCGA-91-6829 TCGA-91-6831 TCGA-91-6835 
        4.01         1.25         1.22        41.33         1.28         1.15 
TCGA-91-6836 
        0.36 

  OR5F1 MUTATED OR5F1 WILD-TYPE 
           4.60            0.07 
  OR5F1 MUTATED OR5F1 WILD-TYPE 
          48.82           85.32 
  OR5F1 MUTATED OR5F1 WILD-TYPE 
          32.55           13.15 
[1] "4.6 - 48.8 (32.6)" "0.1 - 85.3 (13.2)"
     TCGA-05-4249      TCGA-05-4250      TCGA-05-4382      TCGA-05-4384 
"OR5F1 WILD-TYPE" "OR5F1 WILD-TYPE" "OR5F1 WILD-TYPE" "OR5F1 WILD-TYPE" 
     TCGA-05-4390      TCGA-05-4396      TCGA-05-4397      TCGA-05-4398 
"OR5F1 WILD-TYPE"   "OR5F1 MUTATED" "OR5F1 WILD-TYPE" "OR5F1 WILD-TYPE" 
     TCGA-05-4402      TCGA-05-4405      TCGA-05-4415      TCGA-05-4417 
"OR5F1 WILD-TYPE" "OR5F1 WILD-TYPE" "OR5F1 WILD-TYPE" "OR5F1 WILD-TYPE" 
     TCGA-05-4418      TCGA-05-4420      TCGA-05-4424      TCGA-05-4426 
"OR5F1 WILD-TYPE" "OR5F1 WILD-TYPE" "OR5F1 WILD-TYPE" "OR5F1 WILD-TYPE" 
     TCGA-05-4427      TCGA-05-4430      TCGA-05-4432      TCGA-05-4433 
  "OR5F1 MUTATED" "OR5F1 WILD-TYPE" "OR5F1 WILD-TYPE" "OR5F1 WILD-TYPE" 
     TCGA-05-4434      TCGA-05-5420      TCGA-05-5423      TCGA-05-5425 
"OR5F1 WILD-TYPE" "OR5F1 WILD-TYPE" "OR5F1 WILD-TYPE" "OR5F1 WILD-TYPE" 
     TCGA-05-5429      TCGA-05-5715      TCGA-35-3615      TCGA-35-4122 
"OR5F1 WILD-TYPE" "OR5F1 WILD-TYPE" "OR5F1 WILD-TYPE"   "OR5F1 MUTATED" 
     TCGA-35-4123      TCGA-35-5375      TCGA-38-4625      TCGA-38-4626 
"OR5F1 WILD-TYPE" "OR5F1 WILD-TYPE" "OR5F1 WILD-TYPE" "OR5F1 WILD-TYPE" 
     TCGA-38-4627      TCGA-38-4628      TCGA-38-4629      TCGA-38-4630 
"OR5F1 WILD-TYPE" "OR5F1 WILD-TYPE" "OR5F1 WILD-TYPE" "OR5F1 WILD-TYPE" 
     TCGA-38-4631      TCGA-38-4632      TCGA-38-6178      TCGA-44-2655 
"OR5F1 WILD-TYPE" "OR5F1 WILD-TYPE" "OR5F1 WILD-TYPE" "OR5F1 WILD-TYPE" 
     TCGA-44-2656      TCGA-44-2657      TCGA-44-2659      TCGA-44-2661 
"OR5F1 WILD-TYPE" "OR5F1 WILD-TYPE"   "OR5F1 MUTATED" "OR5F1 WILD-TYPE" 
     TCGA-44-2662      TCGA-44-2665      TCGA-44-2666      TCGA-44-2668 
"OR5F1 WILD-TYPE" "OR5F1 WILD-TYPE" "OR5F1 WILD-TYPE" "OR5F1 WILD-TYPE" 
     TCGA-44-3396      TCGA-44-3398      TCGA-44-3918      TCGA-44-3919 
"OR5F1 WILD-TYPE" "OR5F1 WILD-TYPE" "OR5F1 WILD-TYPE" "OR5F1 WILD-TYPE" 
     TCGA-44-4112      TCGA-44-5643      TCGA-44-5645      TCGA-44-6144 
  "OR5F1 MUTATED" "OR5F1 WILD-TYPE" "OR5F1 WILD-TYPE" "OR5F1 WILD-TYPE" 
     TCGA-44-6145      TCGA-44-6146      TCGA-44-6147      TCGA-44-6148 
"OR5F1 WILD-TYPE" "OR5F1 WILD-TYPE" "OR5F1 WILD-TYPE" "OR5F1 WILD-TYPE" 
     TCGA-44-6774      TCGA-44-6775      TCGA-44-6776      TCGA-44-6777 
"OR5F1 WILD-TYPE" "OR5F1 WILD-TYPE" "OR5F1 WILD-TYPE" "OR5F1 WILD-TYPE" 
     TCGA-44-6778      TCGA-44-6779      TCGA-49-4486      TCGA-49-4487 
"OR5F1 WILD-TYPE" "OR5F1 WILD-TYPE" "OR5F1 WILD-TYPE" "OR5F1 WILD-TYPE" 
     TCGA-49-4488      TCGA-49-4490      TCGA-49-4494      TCGA-49-4501 
"OR5F1 WILD-TYPE" "OR5F1 WILD-TYPE" "OR5F1 WILD-TYPE" "OR5F1 WILD-TYPE" 
     TCGA-49-4505      TCGA-49-4506      TCGA-49-4507      TCGA-49-4510 
"OR5F1 WILD-TYPE" "OR5F1 WILD-TYPE" "OR5F1 WILD-TYPE" "OR5F1 WILD-TYPE" 
     TCGA-49-4512      TCGA-49-4514      TCGA-49-6742      TCGA-49-6743 
"OR5F1 WILD-TYPE"   "OR5F1 MUTATED" "OR5F1 WILD-TYPE" "OR5F1 WILD-TYPE" 
     TCGA-49-6744      TCGA-49-6745      TCGA-50-5044      TCGA-50-5045 
"OR5F1 WILD-TYPE" "OR5F1 WILD-TYPE" "OR5F1 WILD-TYPE" "OR5F1 WILD-TYPE" 
     TCGA-50-5049      TCGA-50-5051      TCGA-50-5055      TCGA-50-5066 
  "OR5F1 MUTATED" "OR5F1 WILD-TYPE" "OR5F1 WILD-TYPE" "OR5F1 WILD-TYPE" 
     TCGA-50-5068      TCGA-50-5072      TCGA-50-5930      TCGA-50-5931 
"OR5F1 WILD-TYPE" "OR5F1 WILD-TYPE" "OR5F1 WILD-TYPE" "OR5F1 WILD-TYPE" 
     TCGA-50-5932      TCGA-50-5933      TCGA-50-5935      TCGA-50-5936 
"OR5F1 WILD-TYPE" "OR5F1 WILD-TYPE" "OR5F1 WILD-TYPE" "OR5F1 WILD-TYPE" 
     TCGA-50-5939      TCGA-50-5941      TCGA-50-5942      TCGA-50-5944 
"OR5F1 WILD-TYPE" "OR5F1 WILD-TYPE" "OR5F1 WILD-TYPE" "OR5F1 WILD-TYPE" 
     TCGA-50-5946      TCGA-50-6590      TCGA-50-6591      TCGA-50-6592 
"OR5F1 WILD-TYPE"   "OR5F1 MUTATED" "OR5F1 WILD-TYPE" "OR5F1 WILD-TYPE" 
     TCGA-50-6593      TCGA-50-6594      TCGA-50-6595      TCGA-50-6597 
"OR5F1 WILD-TYPE" "OR5F1 WILD-TYPE" "OR5F1 WILD-TYPE" "OR5F1 WILD-TYPE" 
     TCGA-55-1592      TCGA-55-1594      TCGA-55-1595      TCGA-55-1596 
"OR5F1 WILD-TYPE" "OR5F1 WILD-TYPE" "OR5F1 WILD-TYPE" "OR5F1 WILD-TYPE" 
     TCGA-55-5899      TCGA-55-6543      TCGA-55-6642      TCGA-55-6712 
"OR5F1 WILD-TYPE" "OR5F1 WILD-TYPE" "OR5F1 WILD-TYPE" "OR5F1 WILD-TYPE" 
     TCGA-64-1676      TCGA-64-1677      TCGA-64-1678      TCGA-64-1680 
"OR5F1 WILD-TYPE" "OR5F1 WILD-TYPE"   "OR5F1 MUTATED" "OR5F1 WILD-TYPE" 
     TCGA-64-5774      TCGA-64-5775      TCGA-64-5778      TCGA-64-5779 
"OR5F1 WILD-TYPE" "OR5F1 WILD-TYPE" "OR5F1 WILD-TYPE" "OR5F1 WILD-TYPE" 
     TCGA-64-5781      TCGA-64-5815      TCGA-67-3770      TCGA-67-3771 
  "OR5F1 MUTATED" "OR5F1 WILD-TYPE" "OR5F1 WILD-TYPE" "OR5F1 WILD-TYPE" 
     TCGA-67-3772      TCGA-67-3773      TCGA-67-3774      TCGA-67-6215 
"OR5F1 WILD-TYPE" "OR5F1 WILD-TYPE" "OR5F1 WILD-TYPE" "OR5F1 WILD-TYPE" 
     TCGA-67-6216      TCGA-67-6217      TCGA-71-6725      TCGA-73-4658 
"OR5F1 WILD-TYPE" "OR5F1 WILD-TYPE" "OR5F1 WILD-TYPE" "OR5F1 WILD-TYPE" 
     TCGA-73-4659      TCGA-73-4662      TCGA-73-4666      TCGA-73-4668 
"OR5F1 WILD-TYPE" "OR5F1 WILD-TYPE" "OR5F1 WILD-TYPE" "OR5F1 WILD-TYPE" 
     TCGA-73-4670      TCGA-73-4675      TCGA-73-4676      TCGA-73-4677 
"OR5F1 WILD-TYPE" "OR5F1 WILD-TYPE" "OR5F1 WILD-TYPE" "OR5F1 WILD-TYPE" 
     TCGA-91-6828      TCGA-91-6829      TCGA-91-6831      TCGA-91-6835 
"OR5F1 WILD-TYPE" "OR5F1 WILD-TYPE" "OR5F1 WILD-TYPE" "OR5F1 WILD-TYPE" 
     TCGA-91-6836 
"OR5F1 WILD-TYPE" 
     TCGA-05-4249      TCGA-05-4250      TCGA-05-4382      TCGA-05-4384 
"OR5F1 WILD-TYPE" "OR5F1 WILD-TYPE" "OR5F1 WILD-TYPE" "OR5F1 WILD-TYPE" 
     TCGA-05-4390      TCGA-05-4396      TCGA-05-4397      TCGA-05-4398 
"OR5F1 WILD-TYPE"   "OR5F1 MUTATED" "OR5F1 WILD-TYPE" "OR5F1 WILD-TYPE" 
     TCGA-05-4402      TCGA-05-4405      TCGA-05-4415      TCGA-05-4417 
"OR5F1 WILD-TYPE" "OR5F1 WILD-TYPE" "OR5F1 WILD-TYPE" "OR5F1 WILD-TYPE" 
     TCGA-05-4418      TCGA-05-4420      TCGA-05-4424      TCGA-05-4426 
"OR5F1 WILD-TYPE" "OR5F1 WILD-TYPE" "OR5F1 WILD-TYPE" "OR5F1 WILD-TYPE" 
     TCGA-05-4427      TCGA-05-4430      TCGA-05-4432      TCGA-05-4433 
  "OR5F1 MUTATED" "OR5F1 WILD-TYPE" "OR5F1 WILD-TYPE" "OR5F1 WILD-TYPE" 
     TCGA-05-4434      TCGA-05-5420      TCGA-05-5423      TCGA-05-5425 
"OR5F1 WILD-TYPE" "OR5F1 WILD-TYPE" "OR5F1 WILD-TYPE" "OR5F1 WILD-TYPE" 
     TCGA-05-5429      TCGA-05-5715      TCGA-35-3615      TCGA-35-4122 
"OR5F1 WILD-TYPE" "OR5F1 WILD-TYPE" "OR5F1 WILD-TYPE"   "OR5F1 MUTATED" 
     TCGA-35-4123      TCGA-35-5375      TCGA-38-4625      TCGA-38-4626 
"OR5F1 WILD-TYPE" "OR5F1 WILD-TYPE" "OR5F1 WILD-TYPE" "OR5F1 WILD-TYPE" 
     TCGA-38-4627      TCGA-38-4628      TCGA-38-4629      TCGA-38-4630 
"OR5F1 WILD-TYPE" "OR5F1 WILD-TYPE" "OR5F1 WILD-TYPE" "OR5F1 WILD-TYPE" 
     TCGA-38-4631      TCGA-38-4632      TCGA-38-6178      TCGA-44-2655 
"OR5F1 WILD-TYPE" "OR5F1 WILD-TYPE" "OR5F1 WILD-TYPE" "OR5F1 WILD-TYPE" 
     TCGA-44-2656      TCGA-44-2657      TCGA-44-2659      TCGA-44-2661 
"OR5F1 WILD-TYPE" "OR5F1 WILD-TYPE"   "OR5F1 MUTATED" "OR5F1 WILD-TYPE" 
     TCGA-44-2662      TCGA-44-2665      TCGA-44-2666      TCGA-44-2668 
"OR5F1 WILD-TYPE" "OR5F1 WILD-TYPE" "OR5F1 WILD-TYPE" "OR5F1 WILD-TYPE" 
     TCGA-44-3396      TCGA-44-3398      TCGA-44-3918      TCGA-44-3919 
"OR5F1 WILD-TYPE" "OR5F1 WILD-TYPE" "OR5F1 WILD-TYPE" "OR5F1 WILD-TYPE" 
     TCGA-44-4112      TCGA-44-5643      TCGA-44-5645      TCGA-44-6144 
  "OR5F1 MUTATED" "OR5F1 WILD-TYPE" "OR5F1 WILD-TYPE" "OR5F1 WILD-TYPE" 
     TCGA-44-6145      TCGA-44-6146      TCGA-44-6147      TCGA-44-6148 
"OR5F1 WILD-TYPE" "OR5F1 WILD-TYPE" "OR5F1 WILD-TYPE" "OR5F1 WILD-TYPE" 
     TCGA-44-6774      TCGA-44-6775      TCGA-44-6776      TCGA-44-6777 
"OR5F1 WILD-TYPE" "OR5F1 WILD-TYPE" "OR5F1 WILD-TYPE" "OR5F1 WILD-TYPE" 
     TCGA-44-6778      TCGA-44-6779      TCGA-49-4486      TCGA-49-4487 
"OR5F1 WILD-TYPE" "OR5F1 WILD-TYPE" "OR5F1 WILD-TYPE" "OR5F1 WILD-TYPE" 
     TCGA-49-4488      TCGA-49-4490      TCGA-49-4494      TCGA-49-4501 
"OR5F1 WILD-TYPE" "OR5F1 WILD-TYPE" "OR5F1 WILD-TYPE" "OR5F1 WILD-TYPE" 
     TCGA-49-4505      TCGA-49-4506      TCGA-49-4507      TCGA-49-4510 
"OR5F1 WILD-TYPE" "OR5F1 WILD-TYPE" "OR5F1 WILD-TYPE" "OR5F1 WILD-TYPE" 
     TCGA-49-4512      TCGA-49-4514      TCGA-49-6742      TCGA-49-6743 
"OR5F1 WILD-TYPE"   "OR5F1 MUTATED" "OR5F1 WILD-TYPE" "OR5F1 WILD-TYPE" 
     TCGA-49-6744      TCGA-49-6745      TCGA-50-5044      TCGA-50-5045 
"OR5F1 WILD-TYPE" "OR5F1 WILD-TYPE" "OR5F1 WILD-TYPE" "OR5F1 WILD-TYPE" 
     TCGA-50-5049      TCGA-50-5051      TCGA-50-5055      TCGA-50-5066 
  "OR5F1 MUTATED" "OR5F1 WILD-TYPE" "OR5F1 WILD-TYPE" "OR5F1 WILD-TYPE" 
     TCGA-50-5068      TCGA-50-5072      TCGA-50-5930      TCGA-50-5931 
"OR5F1 WILD-TYPE" "OR5F1 WILD-TYPE" "OR5F1 WILD-TYPE" "OR5F1 WILD-TYPE" 
     TCGA-50-5932      TCGA-50-5933      TCGA-50-5935      TCGA-50-5936 
"OR5F1 WILD-TYPE" "OR5F1 WILD-TYPE" "OR5F1 WILD-TYPE" "OR5F1 WILD-TYPE" 
     TCGA-50-5939      TCGA-50-5941      TCGA-50-5942      TCGA-50-5944 
"OR5F1 WILD-TYPE" "OR5F1 WILD-TYPE" "OR5F1 WILD-TYPE" "OR5F1 WILD-TYPE" 
     TCGA-50-5946      TCGA-50-6590      TCGA-50-6591      TCGA-50-6592 
"OR5F1 WILD-TYPE"   "OR5F1 MUTATED" "OR5F1 WILD-TYPE" "OR5F1 WILD-TYPE" 
     TCGA-50-6593      TCGA-50-6594      TCGA-50-6595      TCGA-50-6597 
"OR5F1 WILD-TYPE" "OR5F1 WILD-TYPE" "OR5F1 WILD-TYPE" "OR5F1 WILD-TYPE" 
     TCGA-55-1592      TCGA-55-1594      TCGA-55-1595      TCGA-55-1596 
"OR5F1 WILD-TYPE" "OR5F1 WILD-TYPE" "OR5F1 WILD-TYPE" "OR5F1 WILD-TYPE" 
     TCGA-55-5899      TCGA-55-6543      TCGA-55-6642      TCGA-55-6712 
"OR5F1 WILD-TYPE" "OR5F1 WILD-TYPE" "OR5F1 WILD-TYPE" "OR5F1 WILD-TYPE" 
     TCGA-64-1676      TCGA-64-1677      TCGA-64-1678      TCGA-64-1680 
"OR5F1 WILD-TYPE" "OR5F1 WILD-TYPE"   "OR5F1 MUTATED" "OR5F1 WILD-TYPE" 
     TCGA-64-5774      TCGA-64-5775      TCGA-64-5778      TCGA-64-5779 
"OR5F1 WILD-TYPE" "OR5F1 WILD-TYPE" "OR5F1 WILD-TYPE" "OR5F1 WILD-TYPE" 
     TCGA-64-5781      TCGA-64-5815      TCGA-67-3770      TCGA-67-3771 
  "OR5F1 MUTATED" "OR5F1 WILD-TYPE" "OR5F1 WILD-TYPE" "OR5F1 WILD-TYPE" 
     TCGA-67-3772      TCGA-67-3773      TCGA-67-3774      TCGA-67-6215 
"OR5F1 WILD-TYPE" "OR5F1 WILD-TYPE" "OR5F1 WILD-TYPE" "OR5F1 WILD-TYPE" 
     TCGA-67-6216      TCGA-67-6217      TCGA-71-6725      TCGA-73-4658 
"OR5F1 WILD-TYPE" "OR5F1 WILD-TYPE" "OR5F1 WILD-TYPE" "OR5F1 WILD-TYPE" 
     TCGA-73-4659      TCGA-73-4662      TCGA-73-4666      TCGA-73-4668 
"OR5F1 WILD-TYPE" "OR5F1 WILD-TYPE" "OR5F1 WILD-TYPE" "OR5F1 WILD-TYPE" 
     TCGA-73-4670      TCGA-73-4675      TCGA-73-4676      TCGA-73-4677 
"OR5F1 WILD-TYPE" "OR5F1 WILD-TYPE" "OR5F1 WILD-TYPE" "OR5F1 WILD-TYPE" 
     TCGA-91-6828      TCGA-91-6829      TCGA-91-6831      TCGA-91-6835 
"OR5F1 WILD-TYPE" "OR5F1 WILD-TYPE" "OR5F1 WILD-TYPE" "OR5F1 WILD-TYPE" 
     TCGA-91-6836 
"OR5F1 WILD-TYPE" 
     TCGA-05-4249      TCGA-05-4250      TCGA-05-4382      TCGA-05-4384 
"OR5F1 WILD-TYPE" "OR5F1 WILD-TYPE" "OR5F1 WILD-TYPE" "OR5F1 WILD-TYPE" 
     TCGA-05-4390      TCGA-05-4396      TCGA-05-4397      TCGA-05-4398 
"OR5F1 WILD-TYPE"   "OR5F1 MUTATED" "OR5F1 WILD-TYPE" "OR5F1 WILD-TYPE" 
     TCGA-05-4402      TCGA-05-4405      TCGA-05-4415      TCGA-05-4417 
"OR5F1 WILD-TYPE" "OR5F1 WILD-TYPE" "OR5F1 WILD-TYPE" "OR5F1 WILD-TYPE" 
     TCGA-05-4418      TCGA-05-4420      TCGA-05-4424      TCGA-05-4426 
"OR5F1 WILD-TYPE" "OR5F1 WILD-TYPE" "OR5F1 WILD-TYPE" "OR5F1 WILD-TYPE" 
     TCGA-05-4427      TCGA-05-4430      TCGA-05-4432      TCGA-05-4433 
  "OR5F1 MUTATED" "OR5F1 WILD-TYPE" "OR5F1 WILD-TYPE" "OR5F1 WILD-TYPE" 
     TCGA-05-4434      TCGA-05-5420      TCGA-05-5423      TCGA-05-5425 
"OR5F1 WILD-TYPE" "OR5F1 WILD-TYPE" "OR5F1 WILD-TYPE" "OR5F1 WILD-TYPE" 
     TCGA-05-5429      TCGA-05-5715      TCGA-35-3615      TCGA-35-4122 
"OR5F1 WILD-TYPE" "OR5F1 WILD-TYPE" "OR5F1 WILD-TYPE"   "OR5F1 MUTATED" 
     TCGA-35-4123      TCGA-35-5375      TCGA-38-4625      TCGA-38-4626 
"OR5F1 WILD-TYPE" "OR5F1 WILD-TYPE" "OR5F1 WILD-TYPE" "OR5F1 WILD-TYPE" 
     TCGA-38-4627      TCGA-38-4628      TCGA-38-4629      TCGA-38-4630 
"OR5F1 WILD-TYPE" "OR5F1 WILD-TYPE" "OR5F1 WILD-TYPE" "OR5F1 WILD-TYPE" 
     TCGA-38-4631      TCGA-38-4632      TCGA-38-6178      TCGA-44-2655 
"OR5F1 WILD-TYPE" "OR5F1 WILD-TYPE" "OR5F1 WILD-TYPE" "OR5F1 WILD-TYPE" 
     TCGA-44-2656      TCGA-44-2657      TCGA-44-2659      TCGA-44-2661 
"OR5F1 WILD-TYPE" "OR5F1 WILD-TYPE"   "OR5F1 MUTATED" "OR5F1 WILD-TYPE" 
     TCGA-44-2662      TCGA-44-2665      TCGA-44-2666      TCGA-44-2668 
"OR5F1 WILD-TYPE" "OR5F1 WILD-TYPE" "OR5F1 WILD-TYPE" "OR5F1 WILD-TYPE" 
     TCGA-44-3396      TCGA-44-3398      TCGA-44-3918      TCGA-44-3919 
"OR5F1 WILD-TYPE" "OR5F1 WILD-TYPE" "OR5F1 WILD-TYPE" "OR5F1 WILD-TYPE" 
     TCGA-44-4112      TCGA-44-5643      TCGA-44-5645      TCGA-44-6144 
  "OR5F1 MUTATED" "OR5F1 WILD-TYPE" "OR5F1 WILD-TYPE" "OR5F1 WILD-TYPE" 
     TCGA-44-6145      TCGA-44-6146      TCGA-44-6147      TCGA-44-6148 
"OR5F1 WILD-TYPE" "OR5F1 WILD-TYPE" "OR5F1 WILD-TYPE" "OR5F1 WILD-TYPE" 
     TCGA-44-6774      TCGA-44-6775      TCGA-44-6776      TCGA-44-6777 
"OR5F1 WILD-TYPE" "OR5F1 WILD-TYPE" "OR5F1 WILD-TYPE" "OR5F1 WILD-TYPE" 
     TCGA-44-6778      TCGA-44-6779      TCGA-49-4486      TCGA-49-4487 
"OR5F1 WILD-TYPE" "OR5F1 WILD-TYPE" "OR5F1 WILD-TYPE" "OR5F1 WILD-TYPE" 
     TCGA-49-4488      TCGA-49-4490      TCGA-49-4494      TCGA-49-4501 
"OR5F1 WILD-TYPE" "OR5F1 WILD-TYPE" "OR5F1 WILD-TYPE" "OR5F1 WILD-TYPE" 
     TCGA-49-4505      TCGA-49-4506      TCGA-49-4507      TCGA-49-4510 
"OR5F1 WILD-TYPE" "OR5F1 WILD-TYPE" "OR5F1 WILD-TYPE" "OR5F1 WILD-TYPE" 
     TCGA-49-4512      TCGA-49-4514      TCGA-49-6742      TCGA-49-6743 
"OR5F1 WILD-TYPE"   "OR5F1 MUTATED" "OR5F1 WILD-TYPE" "OR5F1 WILD-TYPE" 
     TCGA-49-6744      TCGA-49-6745      TCGA-50-5044      TCGA-50-5045 
"OR5F1 WILD-TYPE" "OR5F1 WILD-TYPE" "OR5F1 WILD-TYPE" "OR5F1 WILD-TYPE" 
     TCGA-50-5049      TCGA-50-5051      TCGA-50-5055      TCGA-50-5066 
  "OR5F1 MUTATED" "OR5F1 WILD-TYPE" "OR5F1 WILD-TYPE" "OR5F1 WILD-TYPE" 
     TCGA-50-5068      TCGA-50-5072      TCGA-50-5930      TCGA-50-5931 
"OR5F1 WILD-TYPE" "OR5F1 WILD-TYPE" "OR5F1 WILD-TYPE" "OR5F1 WILD-TYPE" 
     TCGA-50-5932      TCGA-50-5933      TCGA-50-5935      TCGA-50-5936 
"OR5F1 WILD-TYPE" "OR5F1 WILD-TYPE" "OR5F1 WILD-TYPE" "OR5F1 WILD-TYPE" 
     TCGA-50-5939      TCGA-50-5941      TCGA-50-5942      TCGA-50-5944 
"OR5F1 WILD-TYPE" "OR5F1 WILD-TYPE" "OR5F1 WILD-TYPE" "OR5F1 WILD-TYPE" 
     TCGA-50-5946      TCGA-50-6590      TCGA-50-6591      TCGA-50-6592 
"OR5F1 WILD-TYPE"   "OR5F1 MUTATED" "OR5F1 WILD-TYPE" "OR5F1 WILD-TYPE" 
     TCGA-50-6593      TCGA-50-6594      TCGA-50-6595      TCGA-50-6597 
"OR5F1 WILD-TYPE" "OR5F1 WILD-TYPE" "OR5F1 WILD-TYPE" "OR5F1 WILD-TYPE" 
     TCGA-55-1592      TCGA-55-1594      TCGA-55-1595      TCGA-55-1596 
"OR5F1 WILD-TYPE" "OR5F1 WILD-TYPE" "OR5F1 WILD-TYPE" "OR5F1 WILD-TYPE" 
     TCGA-55-5899      TCGA-55-6543      TCGA-55-6642      TCGA-55-6712 
"OR5F1 WILD-TYPE" "OR5F1 WILD-TYPE" "OR5F1 WILD-TYPE" "OR5F1 WILD-TYPE" 
     TCGA-64-1676      TCGA-64-1677      TCGA-64-1678      TCGA-64-1680 
"OR5F1 WILD-TYPE" "OR5F1 WILD-TYPE"   "OR5F1 MUTATED" "OR5F1 WILD-TYPE" 
     TCGA-64-5774      TCGA-64-5775      TCGA-64-5778      TCGA-64-5779 
"OR5F1 WILD-TYPE" "OR5F1 WILD-TYPE" "OR5F1 WILD-TYPE" "OR5F1 WILD-TYPE" 
     TCGA-64-5781      TCGA-64-5815      TCGA-67-3770      TCGA-67-3771 
  "OR5F1 MUTATED" "OR5F1 WILD-TYPE" "OR5F1 WILD-TYPE" "OR5F1 WILD-TYPE" 
     TCGA-67-3772      TCGA-67-3773      TCGA-67-3774      TCGA-67-6215 
"OR5F1 WILD-TYPE" "OR5F1 WILD-TYPE" "OR5F1 WILD-TYPE" "OR5F1 WILD-TYPE" 
     TCGA-67-6216      TCGA-67-6217      TCGA-71-6725      TCGA-73-4658 
"OR5F1 WILD-TYPE" "OR5F1 WILD-TYPE" "OR5F1 WILD-TYPE" "OR5F1 WILD-TYPE" 
     TCGA-73-4659      TCGA-73-4662      TCGA-73-4666      TCGA-73-4668 
"OR5F1 WILD-TYPE" "OR5F1 WILD-TYPE" "OR5F1 WILD-TYPE" "OR5F1 WILD-TYPE" 
     TCGA-73-4670      TCGA-73-4675      TCGA-73-4676      TCGA-73-4677 
"OR5F1 WILD-TYPE" "OR5F1 WILD-TYPE" "OR5F1 WILD-TYPE" "OR5F1 WILD-TYPE" 
     TCGA-91-6828      TCGA-91-6829      TCGA-91-6831      TCGA-91-6835 
"OR5F1 WILD-TYPE" "OR5F1 WILD-TYPE" "OR5F1 WILD-TYPE" "OR5F1 WILD-TYPE" 
     TCGA-91-6836 
"OR5F1 WILD-TYPE" 
[1] "hr=" "2.5"
D67V2, continuous
D67V3, binary
[1] "tbl2"
                 cls
clus              [,1] [,2]
  OR5F1 MUTATED      7    5
  OR5F1 WILD-TYPE   86   74
        clus
vv       OR5F1 MUTATED OR5F1 WILD-TYPE
  FEMALE             7              86
  MALE               5              74
D67V4, continuous
[1] "Remove cluster labels:" "OR5F1 MUTATED"         
clus
  OR5F1 MUTATED OR5F1 WILD-TYPE 
              1              11 
     TCGA-35-4123      TCGA-35-5375      TCGA-64-1677      TCGA-64-5778 
"OR5F1 WILD-TYPE" "OR5F1 WILD-TYPE" "OR5F1 WILD-TYPE" "OR5F1 WILD-TYPE" 
     TCGA-71-6725      TCGA-73-4659      TCGA-73-4662      TCGA-73-4666 
"OR5F1 WILD-TYPE" "OR5F1 WILD-TYPE" "OR5F1 WILD-TYPE" "OR5F1 WILD-TYPE" 
     TCGA-73-4668      TCGA-73-4676      TCGA-75-5122 
"OR5F1 WILD-TYPE" "OR5F1 WILD-TYPE" "OR5F1 WILD-TYPE" 
D67V5, multiclass
D67V6, multiclass
    clus
vv   OR5F1 MUTATED OR5F1 WILD-TYPE
  T1             3              38
  T2             7             101
  T3             1              13
  T4             1               7
D67V7, multiclass
       clus
vv      OR5F1 MUTATED OR5F1 WILD-TYPE
  N0                9              86
  N1                3              34
  N2+N3             0              35
D67V8, multiclass
    clus
vv   OR5F1 MUTATED OR5F1 WILD-TYPE
  M0            12             125
  M1             0               9
  MX             0              22
D67V9, multiclass
     clus
vv    OR5F1 MUTATED OR5F1 WILD-TYPE
  I               8              80
  II              3              30
  III             1              38
  IV              0               9
D67V10, binary
[1] "tbl2"
                 cls
clus              [,1] [,2]
  OR5F1 MUTATED      1   11
  OR5F1 WILD-TYPE   15  145
     clus
vv    OR5F1 MUTATED OR5F1 WILD-TYPE
  NO              1              15
  YES            11             145
D67V11, continuous
D67V12, continuous
D67V13, multiclass
                                             clus
vv                                            OR5F1 MUTATED OR5F1 WILD-TYPE
  CURRENT REFORMED SMOKER FOR < OR = 15 YEARS             7              55
  CURRENT REFORMED SMOKER FOR > 15 YEARS                  4              42
  CURRENT SMOKER                                          0              28
  LIFELONG NON-SMOKER                                     0              24
D67V14, continuous

Clustering(68) Variable = ARHGAP36 MUTATION ANALYSIS
D68V1, survival
                    sevent
clus2                 0  1
  ARHGAP36 MUTATED    7  3
  ARHGAP36 WILD-TYPE 92 47
  ARHGAP36 MUTATED ARHGAP36 WILD-TYPE 
                10                139 
  ARHGAP36 MUTATED ARHGAP36 WILD-TYPE 
                 3                 47 
$`ARHGAP36 MUTATED`
TCGA-05-4382 TCGA-05-4396 TCGA-44-2657 TCGA-44-3918 TCGA-44-6777 TCGA-50-5049 
       19.92         9.96        13.15         6.44        32.45        48.82 
TCGA-55-1592 TCGA-55-5899 TCGA-64-5778 TCGA-91-6836 
       23.05         2.86        30.44         0.36 

$`ARHGAP36 WILD-TYPE`
TCGA-05-4249 TCGA-05-4250 TCGA-05-4384 TCGA-05-4390 TCGA-05-4397 TCGA-05-4398 
       38.07         3.98        14.01        37.02        24.03        47.05 
TCGA-05-4402 TCGA-05-4405 TCGA-05-4415 TCGA-05-4417 TCGA-05-4418 TCGA-05-4420 
        8.02        20.05         2.96        14.93         8.98        29.95 
TCGA-05-4424 TCGA-05-4426 TCGA-05-4427 TCGA-05-4430 TCGA-05-4432 TCGA-05-4433 
       30.02        26.01        26.01        25.02        25.02        24.00 
TCGA-05-4434 TCGA-05-5420 TCGA-05-5423 TCGA-05-5425 TCGA-05-5429 TCGA-05-5715 
       15.02         1.02         4.96         2.96         0.99         2.04 
TCGA-35-3615 TCGA-35-4122 TCGA-35-4123 TCGA-35-5375 TCGA-38-4625 TCGA-38-4626 
        0.46         7.36         5.95         8.68        47.61        85.32 
TCGA-38-4627 TCGA-38-4628 TCGA-38-4629 TCGA-38-4630 TCGA-38-4631 TCGA-38-4632 
       37.71        49.02        28.37        35.28        11.64        44.61 
TCGA-38-6178 TCGA-44-2655 TCGA-44-2656 TCGA-44-2659 TCGA-44-2661 TCGA-44-2662 
        5.19        18.87        19.10        17.39         3.39        15.78 
TCGA-44-2665 TCGA-44-2666 TCGA-44-2668 TCGA-44-3396 TCGA-44-3398 TCGA-44-3919 
       13.15         3.19         8.09        10.22         8.32         6.21 
TCGA-44-4112 TCGA-44-5643 TCGA-44-5645 TCGA-44-6144 TCGA-44-6145 TCGA-44-6146 
        4.60         3.48         6.84         0.30         3.35         9.93 
TCGA-44-6147 TCGA-44-6148 TCGA-44-6774 TCGA-44-6775 TCGA-44-6776 TCGA-44-6778 
        7.76         3.12         5.42         2.70        63.72        36.49 
TCGA-44-6779 TCGA-49-4486 TCGA-49-4487 TCGA-49-4488 TCGA-49-4490 TCGA-49-4494 
       16.41        76.21        28.11        28.57        12.66        35.54 
TCGA-49-4501 TCGA-49-4505 TCGA-49-4506 TCGA-49-4507 TCGA-49-4510 TCGA-49-4512 
       46.72        14.07        32.84         8.81        29.46        29.75 
TCGA-49-4514 TCGA-49-6742 TCGA-49-6743 TCGA-49-6744 TCGA-49-6745 TCGA-50-5044 
       43.20        15.02        12.13        12.99         4.93        20.48 
TCGA-50-5045 TCGA-50-5051 TCGA-50-5055 TCGA-50-5066 TCGA-50-5068 TCGA-50-5072 
       71.47        14.96        25.81         9.76        49.28         8.05 
TCGA-50-5930 TCGA-50-5931 TCGA-50-5932 TCGA-50-5933 TCGA-50-5935 TCGA-50-5936 
        9.27         8.78        35.87        77.88        21.47         8.45 
TCGA-50-5939 TCGA-50-5941 TCGA-50-5942 TCGA-50-5944 TCGA-50-5946 TCGA-50-6590 
       15.12         9.37         4.44        12.26        11.47        42.31 
TCGA-50-6591 TCGA-50-6592 TCGA-50-6593 TCGA-50-6594 TCGA-50-6595 TCGA-50-6597 
        3.88        25.51        11.05        12.16         6.21        33.37 
TCGA-55-1594 TCGA-55-1595 TCGA-55-1596 TCGA-55-6543 TCGA-55-6642 TCGA-55-6712 
       38.73        48.62        45.17         0.07        32.61         0.79 
TCGA-64-1676 TCGA-64-1677 TCGA-64-1678 TCGA-64-1680 TCGA-64-5774 TCGA-64-5775 
       56.81        20.65        39.09        37.02        83.84         0.10 
TCGA-64-5779 TCGA-64-5781 TCGA-64-5815 TCGA-67-3770 TCGA-67-3771 TCGA-67-3772 
       16.67        39.52         7.33         0.99         1.97         0.59 
TCGA-67-3773 TCGA-67-3774 TCGA-67-6215 TCGA-67-6216 TCGA-67-6217 TCGA-71-6725 
        2.04         0.59         0.89         0.69        13.87         2.01 
TCGA-73-4658 TCGA-73-4659 TCGA-73-4662 TCGA-73-4666 TCGA-73-4668 TCGA-73-4670 
       52.57        23.38        29.95        20.28        15.35         0.46 
TCGA-73-4675 TCGA-73-4676 TCGA-73-4677 TCGA-91-6828 TCGA-91-6829 TCGA-91-6831 
        1.32         4.01         1.25         1.22        41.33         1.28 
TCGA-91-6835 
        1.15 

  ARHGAP36 MUTATED ARHGAP36 WILD-TYPE 
              0.36               0.07 
  ARHGAP36 MUTATED ARHGAP36 WILD-TYPE 
             48.82              85.32 
  ARHGAP36 MUTATED ARHGAP36 WILD-TYPE 
            16.535             13.870 
[1] "0.4 - 48.8 (16.5)" "0.1 - 85.3 (13.9)"
        TCGA-05-4249         TCGA-05-4250         TCGA-05-4382 
"ARHGAP36 WILD-TYPE" "ARHGAP36 WILD-TYPE"   "ARHGAP36 MUTATED" 
        TCGA-05-4384         TCGA-05-4390         TCGA-05-4396 
"ARHGAP36 WILD-TYPE" "ARHGAP36 WILD-TYPE"   "ARHGAP36 MUTATED" 
        TCGA-05-4397         TCGA-05-4398         TCGA-05-4402 
"ARHGAP36 WILD-TYPE" "ARHGAP36 WILD-TYPE" "ARHGAP36 WILD-TYPE" 
        TCGA-05-4405         TCGA-05-4415         TCGA-05-4417 
"ARHGAP36 WILD-TYPE" "ARHGAP36 WILD-TYPE" "ARHGAP36 WILD-TYPE" 
        TCGA-05-4418         TCGA-05-4420         TCGA-05-4424 
"ARHGAP36 WILD-TYPE" "ARHGAP36 WILD-TYPE" "ARHGAP36 WILD-TYPE" 
        TCGA-05-4426         TCGA-05-4427         TCGA-05-4430 
"ARHGAP36 WILD-TYPE" "ARHGAP36 WILD-TYPE" "ARHGAP36 WILD-TYPE" 
        TCGA-05-4432         TCGA-05-4433         TCGA-05-4434 
"ARHGAP36 WILD-TYPE" "ARHGAP36 WILD-TYPE" "ARHGAP36 WILD-TYPE" 
        TCGA-05-5420         TCGA-05-5423         TCGA-05-5425 
"ARHGAP36 WILD-TYPE" "ARHGAP36 WILD-TYPE" "ARHGAP36 WILD-TYPE" 
        TCGA-05-5429         TCGA-05-5715         TCGA-35-3615 
"ARHGAP36 WILD-TYPE" "ARHGAP36 WILD-TYPE" "ARHGAP36 WILD-TYPE" 
        TCGA-35-4122         TCGA-35-4123         TCGA-35-5375 
"ARHGAP36 WILD-TYPE" "ARHGAP36 WILD-TYPE" "ARHGAP36 WILD-TYPE" 
        TCGA-38-4625         TCGA-38-4626         TCGA-38-4627 
"ARHGAP36 WILD-TYPE" "ARHGAP36 WILD-TYPE" "ARHGAP36 WILD-TYPE" 
        TCGA-38-4628         TCGA-38-4629         TCGA-38-4630 
"ARHGAP36 WILD-TYPE" "ARHGAP36 WILD-TYPE" "ARHGAP36 WILD-TYPE" 
        TCGA-38-4631         TCGA-38-4632         TCGA-38-6178 
"ARHGAP36 WILD-TYPE" "ARHGAP36 WILD-TYPE" "ARHGAP36 WILD-TYPE" 
        TCGA-44-2655         TCGA-44-2656         TCGA-44-2657 
"ARHGAP36 WILD-TYPE" "ARHGAP36 WILD-TYPE"   "ARHGAP36 MUTATED" 
        TCGA-44-2659         TCGA-44-2661         TCGA-44-2662 
"ARHGAP36 WILD-TYPE" "ARHGAP36 WILD-TYPE" "ARHGAP36 WILD-TYPE" 
        TCGA-44-2665         TCGA-44-2666         TCGA-44-2668 
"ARHGAP36 WILD-TYPE" "ARHGAP36 WILD-TYPE" "ARHGAP36 WILD-TYPE" 
        TCGA-44-3396         TCGA-44-3398         TCGA-44-3918 
"ARHGAP36 WILD-TYPE" "ARHGAP36 WILD-TYPE"   "ARHGAP36 MUTATED" 
        TCGA-44-3919         TCGA-44-4112         TCGA-44-5643 
"ARHGAP36 WILD-TYPE" "ARHGAP36 WILD-TYPE" "ARHGAP36 WILD-TYPE" 
        TCGA-44-5645         TCGA-44-6144         TCGA-44-6145 
"ARHGAP36 WILD-TYPE" "ARHGAP36 WILD-TYPE" "ARHGAP36 WILD-TYPE" 
        TCGA-44-6146         TCGA-44-6147         TCGA-44-6148 
"ARHGAP36 WILD-TYPE" "ARHGAP36 WILD-TYPE" "ARHGAP36 WILD-TYPE" 
        TCGA-44-6774         TCGA-44-6775         TCGA-44-6776 
"ARHGAP36 WILD-TYPE" "ARHGAP36 WILD-TYPE" "ARHGAP36 WILD-TYPE" 
        TCGA-44-6777         TCGA-44-6778         TCGA-44-6779 
  "ARHGAP36 MUTATED" "ARHGAP36 WILD-TYPE" "ARHGAP36 WILD-TYPE" 
        TCGA-49-4486         TCGA-49-4487         TCGA-49-4488 
"ARHGAP36 WILD-TYPE" "ARHGAP36 WILD-TYPE" "ARHGAP36 WILD-TYPE" 
        TCGA-49-4490         TCGA-49-4494         TCGA-49-4501 
"ARHGAP36 WILD-TYPE" "ARHGAP36 WILD-TYPE" "ARHGAP36 WILD-TYPE" 
        TCGA-49-4505         TCGA-49-4506         TCGA-49-4507 
"ARHGAP36 WILD-TYPE" "ARHGAP36 WILD-TYPE" "ARHGAP36 WILD-TYPE" 
        TCGA-49-4510         TCGA-49-4512         TCGA-49-4514 
"ARHGAP36 WILD-TYPE" "ARHGAP36 WILD-TYPE" "ARHGAP36 WILD-TYPE" 
        TCGA-49-6742         TCGA-49-6743         TCGA-49-6744 
"ARHGAP36 WILD-TYPE" "ARHGAP36 WILD-TYPE" "ARHGAP36 WILD-TYPE" 
        TCGA-49-6745         TCGA-50-5044         TCGA-50-5045 
"ARHGAP36 WILD-TYPE" "ARHGAP36 WILD-TYPE" "ARHGAP36 WILD-TYPE" 
        TCGA-50-5049         TCGA-50-5051         TCGA-50-5055 
  "ARHGAP36 MUTATED" "ARHGAP36 WILD-TYPE" "ARHGAP36 WILD-TYPE" 
        TCGA-50-5066         TCGA-50-5068         TCGA-50-5072 
"ARHGAP36 WILD-TYPE" "ARHGAP36 WILD-TYPE" "ARHGAP36 WILD-TYPE" 
        TCGA-50-5930         TCGA-50-5931         TCGA-50-5932 
"ARHGAP36 WILD-TYPE" "ARHGAP36 WILD-TYPE" "ARHGAP36 WILD-TYPE" 
        TCGA-50-5933         TCGA-50-5935         TCGA-50-5936 
"ARHGAP36 WILD-TYPE" "ARHGAP36 WILD-TYPE" "ARHGAP36 WILD-TYPE" 
        TCGA-50-5939         TCGA-50-5941         TCGA-50-5942 
"ARHGAP36 WILD-TYPE" "ARHGAP36 WILD-TYPE" "ARHGAP36 WILD-TYPE" 
        TCGA-50-5944         TCGA-50-5946         TCGA-50-6590 
"ARHGAP36 WILD-TYPE" "ARHGAP36 WILD-TYPE" "ARHGAP36 WILD-TYPE" 
        TCGA-50-6591         TCGA-50-6592         TCGA-50-6593 
"ARHGAP36 WILD-TYPE" "ARHGAP36 WILD-TYPE" "ARHGAP36 WILD-TYPE" 
        TCGA-50-6594         TCGA-50-6595         TCGA-50-6597 
"ARHGAP36 WILD-TYPE" "ARHGAP36 WILD-TYPE" "ARHGAP36 WILD-TYPE" 
        TCGA-55-1592         TCGA-55-1594         TCGA-55-1595 
  "ARHGAP36 MUTATED" "ARHGAP36 WILD-TYPE" "ARHGAP36 WILD-TYPE" 
        TCGA-55-1596         TCGA-55-5899         TCGA-55-6543 
"ARHGAP36 WILD-TYPE"   "ARHGAP36 MUTATED" "ARHGAP36 WILD-TYPE" 
        TCGA-55-6642         TCGA-55-6712         TCGA-64-1676 
"ARHGAP36 WILD-TYPE" "ARHGAP36 WILD-TYPE" "ARHGAP36 WILD-TYPE" 
        TCGA-64-1677         TCGA-64-1678         TCGA-64-1680 
"ARHGAP36 WILD-TYPE" "ARHGAP36 WILD-TYPE" "ARHGAP36 WILD-TYPE" 
        TCGA-64-5774         TCGA-64-5775         TCGA-64-5778 
"ARHGAP36 WILD-TYPE" "ARHGAP36 WILD-TYPE"   "ARHGAP36 MUTATED" 
        TCGA-64-5779         TCGA-64-5781         TCGA-64-5815 
"ARHGAP36 WILD-TYPE" "ARHGAP36 WILD-TYPE" "ARHGAP36 WILD-TYPE" 
        TCGA-67-3770         TCGA-67-3771         TCGA-67-3772 
"ARHGAP36 WILD-TYPE" "ARHGAP36 WILD-TYPE" "ARHGAP36 WILD-TYPE" 
        TCGA-67-3773         TCGA-67-3774         TCGA-67-6215 
"ARHGAP36 WILD-TYPE" "ARHGAP36 WILD-TYPE" "ARHGAP36 WILD-TYPE" 
        TCGA-67-6216         TCGA-67-6217         TCGA-71-6725 
"ARHGAP36 WILD-TYPE" "ARHGAP36 WILD-TYPE" "ARHGAP36 WILD-TYPE" 
        TCGA-73-4658         TCGA-73-4659         TCGA-73-4662 
"ARHGAP36 WILD-TYPE" "ARHGAP36 WILD-TYPE" "ARHGAP36 WILD-TYPE" 
        TCGA-73-4666         TCGA-73-4668         TCGA-73-4670 
"ARHGAP36 WILD-TYPE" "ARHGAP36 WILD-TYPE" "ARHGAP36 WILD-TYPE" 
        TCGA-73-4675         TCGA-73-4676         TCGA-73-4677 
"ARHGAP36 WILD-TYPE" "ARHGAP36 WILD-TYPE" "ARHGAP36 WILD-TYPE" 
        TCGA-91-6828         TCGA-91-6829         TCGA-91-6831 
"ARHGAP36 WILD-TYPE" "ARHGAP36 WILD-TYPE" "ARHGAP36 WILD-TYPE" 
        TCGA-91-6835         TCGA-91-6836 
"ARHGAP36 WILD-TYPE"   "ARHGAP36 MUTATED" 
        TCGA-05-4249         TCGA-05-4250         TCGA-05-4382 
"ARHGAP36 WILD-TYPE" "ARHGAP36 WILD-TYPE"   "ARHGAP36 MUTATED" 
        TCGA-05-4384         TCGA-05-4390         TCGA-05-4396 
"ARHGAP36 WILD-TYPE" "ARHGAP36 WILD-TYPE"   "ARHGAP36 MUTATED" 
        TCGA-05-4397         TCGA-05-4398         TCGA-05-4402 
"ARHGAP36 WILD-TYPE" "ARHGAP36 WILD-TYPE" "ARHGAP36 WILD-TYPE" 
        TCGA-05-4405         TCGA-05-4415         TCGA-05-4417 
"ARHGAP36 WILD-TYPE" "ARHGAP36 WILD-TYPE" "ARHGAP36 WILD-TYPE" 
        TCGA-05-4418         TCGA-05-4420         TCGA-05-4424 
"ARHGAP36 WILD-TYPE" "ARHGAP36 WILD-TYPE" "ARHGAP36 WILD-TYPE" 
        TCGA-05-4426         TCGA-05-4427         TCGA-05-4430 
"ARHGAP36 WILD-TYPE" "ARHGAP36 WILD-TYPE" "ARHGAP36 WILD-TYPE" 
        TCGA-05-4432         TCGA-05-4433         TCGA-05-4434 
"ARHGAP36 WILD-TYPE" "ARHGAP36 WILD-TYPE" "ARHGAP36 WILD-TYPE" 
        TCGA-05-5420         TCGA-05-5423         TCGA-05-5425 
"ARHGAP36 WILD-TYPE" "ARHGAP36 WILD-TYPE" "ARHGAP36 WILD-TYPE" 
        TCGA-05-5429         TCGA-05-5715         TCGA-35-3615 
"ARHGAP36 WILD-TYPE" "ARHGAP36 WILD-TYPE" "ARHGAP36 WILD-TYPE" 
        TCGA-35-4122         TCGA-35-4123         TCGA-35-5375 
"ARHGAP36 WILD-TYPE" "ARHGAP36 WILD-TYPE" "ARHGAP36 WILD-TYPE" 
        TCGA-38-4625         TCGA-38-4626         TCGA-38-4627 
"ARHGAP36 WILD-TYPE" "ARHGAP36 WILD-TYPE" "ARHGAP36 WILD-TYPE" 
        TCGA-38-4628         TCGA-38-4629         TCGA-38-4630 
"ARHGAP36 WILD-TYPE" "ARHGAP36 WILD-TYPE" "ARHGAP36 WILD-TYPE" 
        TCGA-38-4631         TCGA-38-4632         TCGA-38-6178 
"ARHGAP36 WILD-TYPE" "ARHGAP36 WILD-TYPE" "ARHGAP36 WILD-TYPE" 
        TCGA-44-2655         TCGA-44-2656         TCGA-44-2657 
"ARHGAP36 WILD-TYPE" "ARHGAP36 WILD-TYPE"   "ARHGAP36 MUTATED" 
        TCGA-44-2659         TCGA-44-2661         TCGA-44-2662 
"ARHGAP36 WILD-TYPE" "ARHGAP36 WILD-TYPE" "ARHGAP36 WILD-TYPE" 
        TCGA-44-2665         TCGA-44-2666         TCGA-44-2668 
"ARHGAP36 WILD-TYPE" "ARHGAP36 WILD-TYPE" "ARHGAP36 WILD-TYPE" 
        TCGA-44-3396         TCGA-44-3398         TCGA-44-3918 
"ARHGAP36 WILD-TYPE" "ARHGAP36 WILD-TYPE"   "ARHGAP36 MUTATED" 
        TCGA-44-3919         TCGA-44-4112         TCGA-44-5643 
"ARHGAP36 WILD-TYPE" "ARHGAP36 WILD-TYPE" "ARHGAP36 WILD-TYPE" 
        TCGA-44-5645         TCGA-44-6144         TCGA-44-6145 
"ARHGAP36 WILD-TYPE" "ARHGAP36 WILD-TYPE" "ARHGAP36 WILD-TYPE" 
        TCGA-44-6146         TCGA-44-6147         TCGA-44-6148 
"ARHGAP36 WILD-TYPE" "ARHGAP36 WILD-TYPE" "ARHGAP36 WILD-TYPE" 
        TCGA-44-6774         TCGA-44-6775         TCGA-44-6776 
"ARHGAP36 WILD-TYPE" "ARHGAP36 WILD-TYPE" "ARHGAP36 WILD-TYPE" 
        TCGA-44-6777         TCGA-44-6778         TCGA-44-6779 
  "ARHGAP36 MUTATED" "ARHGAP36 WILD-TYPE" "ARHGAP36 WILD-TYPE" 
        TCGA-49-4486         TCGA-49-4487         TCGA-49-4488 
"ARHGAP36 WILD-TYPE" "ARHGAP36 WILD-TYPE" "ARHGAP36 WILD-TYPE" 
        TCGA-49-4490         TCGA-49-4494         TCGA-49-4501 
"ARHGAP36 WILD-TYPE" "ARHGAP36 WILD-TYPE" "ARHGAP36 WILD-TYPE" 
        TCGA-49-4505         TCGA-49-4506         TCGA-49-4507 
"ARHGAP36 WILD-TYPE" "ARHGAP36 WILD-TYPE" "ARHGAP36 WILD-TYPE" 
        TCGA-49-4510         TCGA-49-4512         TCGA-49-4514 
"ARHGAP36 WILD-TYPE" "ARHGAP36 WILD-TYPE" "ARHGAP36 WILD-TYPE" 
        TCGA-49-6742         TCGA-49-6743         TCGA-49-6744 
"ARHGAP36 WILD-TYPE" "ARHGAP36 WILD-TYPE" "ARHGAP36 WILD-TYPE" 
        TCGA-49-6745         TCGA-50-5044         TCGA-50-5045 
"ARHGAP36 WILD-TYPE" "ARHGAP36 WILD-TYPE" "ARHGAP36 WILD-TYPE" 
        TCGA-50-5049         TCGA-50-5051         TCGA-50-5055 
  "ARHGAP36 MUTATED" "ARHGAP36 WILD-TYPE" "ARHGAP36 WILD-TYPE" 
        TCGA-50-5066         TCGA-50-5068         TCGA-50-5072 
"ARHGAP36 WILD-TYPE" "ARHGAP36 WILD-TYPE" "ARHGAP36 WILD-TYPE" 
        TCGA-50-5930         TCGA-50-5931         TCGA-50-5932 
"ARHGAP36 WILD-TYPE" "ARHGAP36 WILD-TYPE" "ARHGAP36 WILD-TYPE" 
        TCGA-50-5933         TCGA-50-5935         TCGA-50-5936 
"ARHGAP36 WILD-TYPE" "ARHGAP36 WILD-TYPE" "ARHGAP36 WILD-TYPE" 
        TCGA-50-5939         TCGA-50-5941         TCGA-50-5942 
"ARHGAP36 WILD-TYPE" "ARHGAP36 WILD-TYPE" "ARHGAP36 WILD-TYPE" 
        TCGA-50-5944         TCGA-50-5946         TCGA-50-6590 
"ARHGAP36 WILD-TYPE" "ARHGAP36 WILD-TYPE" "ARHGAP36 WILD-TYPE" 
        TCGA-50-6591         TCGA-50-6592         TCGA-50-6593 
"ARHGAP36 WILD-TYPE" "ARHGAP36 WILD-TYPE" "ARHGAP36 WILD-TYPE" 
        TCGA-50-6594         TCGA-50-6595         TCGA-50-6597 
"ARHGAP36 WILD-TYPE" "ARHGAP36 WILD-TYPE" "ARHGAP36 WILD-TYPE" 
        TCGA-55-1592         TCGA-55-1594         TCGA-55-1595 
  "ARHGAP36 MUTATED" "ARHGAP36 WILD-TYPE" "ARHGAP36 WILD-TYPE" 
        TCGA-55-1596         TCGA-55-5899         TCGA-55-6543 
"ARHGAP36 WILD-TYPE"   "ARHGAP36 MUTATED" "ARHGAP36 WILD-TYPE" 
        TCGA-55-6642         TCGA-55-6712         TCGA-64-1676 
"ARHGAP36 WILD-TYPE" "ARHGAP36 WILD-TYPE" "ARHGAP36 WILD-TYPE" 
        TCGA-64-1677         TCGA-64-1678         TCGA-64-1680 
"ARHGAP36 WILD-TYPE" "ARHGAP36 WILD-TYPE" "ARHGAP36 WILD-TYPE" 
        TCGA-64-5774         TCGA-64-5775         TCGA-64-5778 
"ARHGAP36 WILD-TYPE" "ARHGAP36 WILD-TYPE"   "ARHGAP36 MUTATED" 
        TCGA-64-5779         TCGA-64-5781         TCGA-64-5815 
"ARHGAP36 WILD-TYPE" "ARHGAP36 WILD-TYPE" "ARHGAP36 WILD-TYPE" 
        TCGA-67-3770         TCGA-67-3771         TCGA-67-3772 
"ARHGAP36 WILD-TYPE" "ARHGAP36 WILD-TYPE" "ARHGAP36 WILD-TYPE" 
        TCGA-67-3773         TCGA-67-3774         TCGA-67-6215 
"ARHGAP36 WILD-TYPE" "ARHGAP36 WILD-TYPE" "ARHGAP36 WILD-TYPE" 
        TCGA-67-6216         TCGA-67-6217         TCGA-71-6725 
"ARHGAP36 WILD-TYPE" "ARHGAP36 WILD-TYPE" "ARHGAP36 WILD-TYPE" 
        TCGA-73-4658         TCGA-73-4659         TCGA-73-4662 
"ARHGAP36 WILD-TYPE" "ARHGAP36 WILD-TYPE" "ARHGAP36 WILD-TYPE" 
        TCGA-73-4666         TCGA-73-4668         TCGA-73-4670 
"ARHGAP36 WILD-TYPE" "ARHGAP36 WILD-TYPE" "ARHGAP36 WILD-TYPE" 
        TCGA-73-4675         TCGA-73-4676         TCGA-73-4677 
"ARHGAP36 WILD-TYPE" "ARHGAP36 WILD-TYPE" "ARHGAP36 WILD-TYPE" 
        TCGA-91-6828         TCGA-91-6829         TCGA-91-6831 
"ARHGAP36 WILD-TYPE" "ARHGAP36 WILD-TYPE" "ARHGAP36 WILD-TYPE" 
        TCGA-91-6835         TCGA-91-6836 
"ARHGAP36 WILD-TYPE"   "ARHGAP36 MUTATED" 
        TCGA-05-4249         TCGA-05-4250         TCGA-05-4382 
"ARHGAP36 WILD-TYPE" "ARHGAP36 WILD-TYPE"   "ARHGAP36 MUTATED" 
        TCGA-05-4384         TCGA-05-4390         TCGA-05-4396 
"ARHGAP36 WILD-TYPE" "ARHGAP36 WILD-TYPE"   "ARHGAP36 MUTATED" 
        TCGA-05-4397         TCGA-05-4398         TCGA-05-4402 
"ARHGAP36 WILD-TYPE" "ARHGAP36 WILD-TYPE" "ARHGAP36 WILD-TYPE" 
        TCGA-05-4405         TCGA-05-4415         TCGA-05-4417 
"ARHGAP36 WILD-TYPE" "ARHGAP36 WILD-TYPE" "ARHGAP36 WILD-TYPE" 
        TCGA-05-4418         TCGA-05-4420         TCGA-05-4424 
"ARHGAP36 WILD-TYPE" "ARHGAP36 WILD-TYPE" "ARHGAP36 WILD-TYPE" 
        TCGA-05-4426         TCGA-05-4427         TCGA-05-4430 
"ARHGAP36 WILD-TYPE" "ARHGAP36 WILD-TYPE" "ARHGAP36 WILD-TYPE" 
        TCGA-05-4432         TCGA-05-4433         TCGA-05-4434 
"ARHGAP36 WILD-TYPE" "ARHGAP36 WILD-TYPE" "ARHGAP36 WILD-TYPE" 
        TCGA-05-5420         TCGA-05-5423         TCGA-05-5425 
"ARHGAP36 WILD-TYPE" "ARHGAP36 WILD-TYPE" "ARHGAP36 WILD-TYPE" 
        TCGA-05-5429         TCGA-05-5715         TCGA-35-3615 
"ARHGAP36 WILD-TYPE" "ARHGAP36 WILD-TYPE" "ARHGAP36 WILD-TYPE" 
        TCGA-35-4122         TCGA-35-4123         TCGA-35-5375 
"ARHGAP36 WILD-TYPE" "ARHGAP36 WILD-TYPE" "ARHGAP36 WILD-TYPE" 
        TCGA-38-4625         TCGA-38-4626         TCGA-38-4627 
"ARHGAP36 WILD-TYPE" "ARHGAP36 WILD-TYPE" "ARHGAP36 WILD-TYPE" 
        TCGA-38-4628         TCGA-38-4629         TCGA-38-4630 
"ARHGAP36 WILD-TYPE" "ARHGAP36 WILD-TYPE" "ARHGAP36 WILD-TYPE" 
        TCGA-38-4631         TCGA-38-4632         TCGA-38-6178 
"ARHGAP36 WILD-TYPE" "ARHGAP36 WILD-TYPE" "ARHGAP36 WILD-TYPE" 
        TCGA-44-2655         TCGA-44-2656         TCGA-44-2657 
"ARHGAP36 WILD-TYPE" "ARHGAP36 WILD-TYPE"   "ARHGAP36 MUTATED" 
        TCGA-44-2659         TCGA-44-2661         TCGA-44-2662 
"ARHGAP36 WILD-TYPE" "ARHGAP36 WILD-TYPE" "ARHGAP36 WILD-TYPE" 
        TCGA-44-2665         TCGA-44-2666         TCGA-44-2668 
"ARHGAP36 WILD-TYPE" "ARHGAP36 WILD-TYPE" "ARHGAP36 WILD-TYPE" 
        TCGA-44-3396         TCGA-44-3398         TCGA-44-3918 
"ARHGAP36 WILD-TYPE" "ARHGAP36 WILD-TYPE"   "ARHGAP36 MUTATED" 
        TCGA-44-3919         TCGA-44-4112         TCGA-44-5643 
"ARHGAP36 WILD-TYPE" "ARHGAP36 WILD-TYPE" "ARHGAP36 WILD-TYPE" 
        TCGA-44-5645         TCGA-44-6144         TCGA-44-6145 
"ARHGAP36 WILD-TYPE" "ARHGAP36 WILD-TYPE" "ARHGAP36 WILD-TYPE" 
        TCGA-44-6146         TCGA-44-6147         TCGA-44-6148 
"ARHGAP36 WILD-TYPE" "ARHGAP36 WILD-TYPE" "ARHGAP36 WILD-TYPE" 
        TCGA-44-6774         TCGA-44-6775         TCGA-44-6776 
"ARHGAP36 WILD-TYPE" "ARHGAP36 WILD-TYPE" "ARHGAP36 WILD-TYPE" 
        TCGA-44-6777         TCGA-44-6778         TCGA-44-6779 
  "ARHGAP36 MUTATED" "ARHGAP36 WILD-TYPE" "ARHGAP36 WILD-TYPE" 
        TCGA-49-4486         TCGA-49-4487         TCGA-49-4488 
"ARHGAP36 WILD-TYPE" "ARHGAP36 WILD-TYPE" "ARHGAP36 WILD-TYPE" 
        TCGA-49-4490         TCGA-49-4494         TCGA-49-4501 
"ARHGAP36 WILD-TYPE" "ARHGAP36 WILD-TYPE" "ARHGAP36 WILD-TYPE" 
        TCGA-49-4505         TCGA-49-4506         TCGA-49-4507 
"ARHGAP36 WILD-TYPE" "ARHGAP36 WILD-TYPE" "ARHGAP36 WILD-TYPE" 
        TCGA-49-4510         TCGA-49-4512         TCGA-49-4514 
"ARHGAP36 WILD-TYPE" "ARHGAP36 WILD-TYPE" "ARHGAP36 WILD-TYPE" 
        TCGA-49-6742         TCGA-49-6743         TCGA-49-6744 
"ARHGAP36 WILD-TYPE" "ARHGAP36 WILD-TYPE" "ARHGAP36 WILD-TYPE" 
        TCGA-49-6745         TCGA-50-5044         TCGA-50-5045 
"ARHGAP36 WILD-TYPE" "ARHGAP36 WILD-TYPE" "ARHGAP36 WILD-TYPE" 
        TCGA-50-5049         TCGA-50-5051         TCGA-50-5055 
  "ARHGAP36 MUTATED" "ARHGAP36 WILD-TYPE" "ARHGAP36 WILD-TYPE" 
        TCGA-50-5066         TCGA-50-5068         TCGA-50-5072 
"ARHGAP36 WILD-TYPE" "ARHGAP36 WILD-TYPE" "ARHGAP36 WILD-TYPE" 
        TCGA-50-5930         TCGA-50-5931         TCGA-50-5932 
"ARHGAP36 WILD-TYPE" "ARHGAP36 WILD-TYPE" "ARHGAP36 WILD-TYPE" 
        TCGA-50-5933         TCGA-50-5935         TCGA-50-5936 
"ARHGAP36 WILD-TYPE" "ARHGAP36 WILD-TYPE" "ARHGAP36 WILD-TYPE" 
        TCGA-50-5939         TCGA-50-5941         TCGA-50-5942 
"ARHGAP36 WILD-TYPE" "ARHGAP36 WILD-TYPE" "ARHGAP36 WILD-TYPE" 
        TCGA-50-5944         TCGA-50-5946         TCGA-50-6590 
"ARHGAP36 WILD-TYPE" "ARHGAP36 WILD-TYPE" "ARHGAP36 WILD-TYPE" 
        TCGA-50-6591         TCGA-50-6592         TCGA-50-6593 
"ARHGAP36 WILD-TYPE" "ARHGAP36 WILD-TYPE" "ARHGAP36 WILD-TYPE" 
        TCGA-50-6594         TCGA-50-6595         TCGA-50-6597 
"ARHGAP36 WILD-TYPE" "ARHGAP36 WILD-TYPE" "ARHGAP36 WILD-TYPE" 
        TCGA-55-1592         TCGA-55-1594         TCGA-55-1595 
  "ARHGAP36 MUTATED" "ARHGAP36 WILD-TYPE" "ARHGAP36 WILD-TYPE" 
        TCGA-55-1596         TCGA-55-5899         TCGA-55-6543 
"ARHGAP36 WILD-TYPE"   "ARHGAP36 MUTATED" "ARHGAP36 WILD-TYPE" 
        TCGA-55-6642         TCGA-55-6712         TCGA-64-1676 
"ARHGAP36 WILD-TYPE" "ARHGAP36 WILD-TYPE" "ARHGAP36 WILD-TYPE" 
        TCGA-64-1677         TCGA-64-1678         TCGA-64-1680 
"ARHGAP36 WILD-TYPE" "ARHGAP36 WILD-TYPE" "ARHGAP36 WILD-TYPE" 
        TCGA-64-5774         TCGA-64-5775         TCGA-64-5778 
"ARHGAP36 WILD-TYPE" "ARHGAP36 WILD-TYPE"   "ARHGAP36 MUTATED" 
        TCGA-64-5779         TCGA-64-5781         TCGA-64-5815 
"ARHGAP36 WILD-TYPE" "ARHGAP36 WILD-TYPE" "ARHGAP36 WILD-TYPE" 
        TCGA-67-3770         TCGA-67-3771         TCGA-67-3772 
"ARHGAP36 WILD-TYPE" "ARHGAP36 WILD-TYPE" "ARHGAP36 WILD-TYPE" 
        TCGA-67-3773         TCGA-67-3774         TCGA-67-6215 
"ARHGAP36 WILD-TYPE" "ARHGAP36 WILD-TYPE" "ARHGAP36 WILD-TYPE" 
        TCGA-67-6216         TCGA-67-6217         TCGA-71-6725 
"ARHGAP36 WILD-TYPE" "ARHGAP36 WILD-TYPE" "ARHGAP36 WILD-TYPE" 
        TCGA-73-4658         TCGA-73-4659         TCGA-73-4662 
"ARHGAP36 WILD-TYPE" "ARHGAP36 WILD-TYPE" "ARHGAP36 WILD-TYPE" 
        TCGA-73-4666         TCGA-73-4668         TCGA-73-4670 
"ARHGAP36 WILD-TYPE" "ARHGAP36 WILD-TYPE" "ARHGAP36 WILD-TYPE" 
        TCGA-73-4675         TCGA-73-4676         TCGA-73-4677 
"ARHGAP36 WILD-TYPE" "ARHGAP36 WILD-TYPE" "ARHGAP36 WILD-TYPE" 
        TCGA-91-6828         TCGA-91-6829         TCGA-91-6831 
"ARHGAP36 WILD-TYPE" "ARHGAP36 WILD-TYPE" "ARHGAP36 WILD-TYPE" 
        TCGA-91-6835         TCGA-91-6836 
"ARHGAP36 WILD-TYPE"   "ARHGAP36 MUTATED" 
[1] "hr=" "1"  
D68V2, continuous
D68V3, binary
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  ARHGAP36 MUTATED      6    7
  ARHGAP36 WILD-TYPE   87   72
        clus
vv       ARHGAP36 MUTATED ARHGAP36 WILD-TYPE
  FEMALE                6                 87
  MALE                  7                 72
D68V4, continuous
[1] "Remove cluster labels:" "ARHGAP36 MUTATED"      
clus
  ARHGAP36 MUTATED ARHGAP36 WILD-TYPE 
                 1                 11 
        TCGA-35-4122         TCGA-35-4123         TCGA-35-5375 
"ARHGAP36 WILD-TYPE" "ARHGAP36 WILD-TYPE" "ARHGAP36 WILD-TYPE" 
        TCGA-64-1677         TCGA-71-6725         TCGA-73-4659 
"ARHGAP36 WILD-TYPE" "ARHGAP36 WILD-TYPE" "ARHGAP36 WILD-TYPE" 
        TCGA-73-4662         TCGA-73-4666         TCGA-73-4668 
"ARHGAP36 WILD-TYPE" "ARHGAP36 WILD-TYPE" "ARHGAP36 WILD-TYPE" 
        TCGA-73-4676         TCGA-75-5122 
"ARHGAP36 WILD-TYPE" "ARHGAP36 WILD-TYPE" 
D68V5, multiclass
D68V6, multiclass
    clus
vv   ARHGAP36 MUTATED ARHGAP36 WILD-TYPE
  T1                2                 39
  T2                8                100
  T3                2                 12
  T4                1                  7
D68V7, multiclass
       clus
vv      ARHGAP36 MUTATED ARHGAP36 WILD-TYPE
  N0                   8                 87
  N1                   2                 35
  N2+N3                1                 34
D68V8, multiclass
    clus
vv   ARHGAP36 MUTATED ARHGAP36 WILD-TYPE
  M0               10                127
  M1                0                  9
  MX                3                 19
D68V9, multiclass
     clus
vv    ARHGAP36 MUTATED ARHGAP36 WILD-TYPE
  I                 10                 78
  II                 1                 32
  III                2                 37
  IV                 0                  9
D68V10, binary
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  ARHGAP36 MUTATED      2   11
  ARHGAP36 WILD-TYPE   14  145
     clus
vv    ARHGAP36 MUTATED ARHGAP36 WILD-TYPE
  NO                 2                 14
  YES               11                145
D68V11, continuous
D68V12, continuous
D68V13, multiclass
                                             clus
vv                                            ARHGAP36 MUTATED
  CURRENT REFORMED SMOKER FOR < OR = 15 YEARS                7
  CURRENT REFORMED SMOKER FOR > 15 YEARS                     2
  CURRENT SMOKER                                             3
  LIFELONG NON-SMOKER                                        0
                                             clus
vv                                            ARHGAP36 WILD-TYPE
  CURRENT REFORMED SMOKER FOR < OR = 15 YEARS                 55
  CURRENT REFORMED SMOKER FOR > 15 YEARS                      44
  CURRENT SMOKER                                              25
  LIFELONG NON-SMOKER                                         24
D68V14, continuous

Clustering(69) Variable = MYL10 MUTATION ANALYSIS
D69V1, survival
                 sevent
clus2              0  1
  MYL10 MUTATED    3  2
  MYL10 WILD-TYPE 96 48
  MYL10 MUTATED MYL10 WILD-TYPE 
              5             144 
  MYL10 MUTATED MYL10 WILD-TYPE 
              2              48 
$`MYL10 MUTATED`
TCGA-05-4250 TCGA-05-4398 TCGA-05-4418 TCGA-05-4430 TCGA-73-4676 
        3.98        47.05         8.98        25.02         4.01 

$`MYL10 WILD-TYPE`
TCGA-05-4249 TCGA-05-4382 TCGA-05-4384 TCGA-05-4390 TCGA-05-4396 TCGA-05-4397 
       38.07        19.92        14.01        37.02         9.96        24.03 
TCGA-05-4402 TCGA-05-4405 TCGA-05-4415 TCGA-05-4417 TCGA-05-4420 TCGA-05-4424 
        8.02        20.05         2.96        14.93        29.95        30.02 
TCGA-05-4426 TCGA-05-4427 TCGA-05-4432 TCGA-05-4433 TCGA-05-4434 TCGA-05-5420 
       26.01        26.01        25.02        24.00        15.02         1.02 
TCGA-05-5423 TCGA-05-5425 TCGA-05-5429 TCGA-05-5715 TCGA-35-3615 TCGA-35-4122 
        4.96         2.96         0.99         2.04         0.46         7.36 
TCGA-35-4123 TCGA-35-5375 TCGA-38-4625 TCGA-38-4626 TCGA-38-4627 TCGA-38-4628 
        5.95         8.68        47.61        85.32        37.71        49.02 
TCGA-38-4629 TCGA-38-4630 TCGA-38-4631 TCGA-38-4632 TCGA-38-6178 TCGA-44-2655 
       28.37        35.28        11.64        44.61         5.19        18.87 
TCGA-44-2656 TCGA-44-2657 TCGA-44-2659 TCGA-44-2661 TCGA-44-2662 TCGA-44-2665 
       19.10        13.15        17.39         3.39        15.78        13.15 
TCGA-44-2666 TCGA-44-2668 TCGA-44-3396 TCGA-44-3398 TCGA-44-3918 TCGA-44-3919 
        3.19         8.09        10.22         8.32         6.44         6.21 
TCGA-44-4112 TCGA-44-5643 TCGA-44-5645 TCGA-44-6144 TCGA-44-6145 TCGA-44-6146 
        4.60         3.48         6.84         0.30         3.35         9.93 
TCGA-44-6147 TCGA-44-6148 TCGA-44-6774 TCGA-44-6775 TCGA-44-6776 TCGA-44-6777 
        7.76         3.12         5.42         2.70        63.72        32.45 
TCGA-44-6778 TCGA-44-6779 TCGA-49-4486 TCGA-49-4487 TCGA-49-4488 TCGA-49-4490 
       36.49        16.41        76.21        28.11        28.57        12.66 
TCGA-49-4494 TCGA-49-4501 TCGA-49-4505 TCGA-49-4506 TCGA-49-4507 TCGA-49-4510 
       35.54        46.72        14.07        32.84         8.81        29.46 
TCGA-49-4512 TCGA-49-4514 TCGA-49-6742 TCGA-49-6743 TCGA-49-6744 TCGA-49-6745 
       29.75        43.20        15.02        12.13        12.99         4.93 
TCGA-50-5044 TCGA-50-5045 TCGA-50-5049 TCGA-50-5051 TCGA-50-5055 TCGA-50-5066 
       20.48        71.47        48.82        14.96        25.81         9.76 
TCGA-50-5068 TCGA-50-5072 TCGA-50-5930 TCGA-50-5931 TCGA-50-5932 TCGA-50-5933 
       49.28         8.05         9.27         8.78        35.87        77.88 
TCGA-50-5935 TCGA-50-5936 TCGA-50-5939 TCGA-50-5941 TCGA-50-5942 TCGA-50-5944 
       21.47         8.45        15.12         9.37         4.44        12.26 
TCGA-50-5946 TCGA-50-6590 TCGA-50-6591 TCGA-50-6592 TCGA-50-6593 TCGA-50-6594 
       11.47        42.31         3.88        25.51        11.05        12.16 
TCGA-50-6595 TCGA-50-6597 TCGA-55-1592 TCGA-55-1594 TCGA-55-1595 TCGA-55-1596 
        6.21        33.37        23.05        38.73        48.62        45.17 
TCGA-55-5899 TCGA-55-6543 TCGA-55-6642 TCGA-55-6712 TCGA-64-1676 TCGA-64-1677 
        2.86         0.07        32.61         0.79        56.81        20.65 
TCGA-64-1678 TCGA-64-1680 TCGA-64-5774 TCGA-64-5775 TCGA-64-5778 TCGA-64-5779 
       39.09        37.02        83.84         0.10        30.44        16.67 
TCGA-64-5781 TCGA-64-5815 TCGA-67-3770 TCGA-67-3771 TCGA-67-3772 TCGA-67-3773 
       39.52         7.33         0.99         1.97         0.59         2.04 
TCGA-67-3774 TCGA-67-6215 TCGA-67-6216 TCGA-67-6217 TCGA-71-6725 TCGA-73-4658 
        0.59         0.89         0.69        13.87         2.01        52.57 
TCGA-73-4659 TCGA-73-4662 TCGA-73-4666 TCGA-73-4668 TCGA-73-4670 TCGA-73-4675 
       23.38        29.95        20.28        15.35         0.46         1.32 
TCGA-73-4677 TCGA-91-6828 TCGA-91-6829 TCGA-91-6831 TCGA-91-6835 TCGA-91-6836 
        1.25         1.22        41.33         1.28         1.15         0.36 

  MYL10 MUTATED MYL10 WILD-TYPE 
           3.98            0.07 
  MYL10 MUTATED MYL10 WILD-TYPE 
          47.05           85.32 
  MYL10 MUTATED MYL10 WILD-TYPE 
           8.98           13.94 
[1] "4.0 - 47.0 (9.0)"  "0.1 - 85.3 (13.9)"
     TCGA-05-4249      TCGA-05-4250      TCGA-05-4382      TCGA-05-4384 
"MYL10 WILD-TYPE"   "MYL10 MUTATED" "MYL10 WILD-TYPE" "MYL10 WILD-TYPE" 
     TCGA-05-4390      TCGA-05-4396      TCGA-05-4397      TCGA-05-4398 
"MYL10 WILD-TYPE" "MYL10 WILD-TYPE" "MYL10 WILD-TYPE"   "MYL10 MUTATED" 
     TCGA-05-4402      TCGA-05-4405      TCGA-05-4415      TCGA-05-4417 
"MYL10 WILD-TYPE" "MYL10 WILD-TYPE" "MYL10 WILD-TYPE" "MYL10 WILD-TYPE" 
     TCGA-05-4418      TCGA-05-4420      TCGA-05-4424      TCGA-05-4426 
  "MYL10 MUTATED" "MYL10 WILD-TYPE" "MYL10 WILD-TYPE" "MYL10 WILD-TYPE" 
     TCGA-05-4427      TCGA-05-4430      TCGA-05-4432      TCGA-05-4433 
"MYL10 WILD-TYPE"   "MYL10 MUTATED" "MYL10 WILD-TYPE" "MYL10 WILD-TYPE" 
     TCGA-05-4434      TCGA-05-5420      TCGA-05-5423      TCGA-05-5425 
"MYL10 WILD-TYPE" "MYL10 WILD-TYPE" "MYL10 WILD-TYPE" "MYL10 WILD-TYPE" 
     TCGA-05-5429      TCGA-05-5715      TCGA-35-3615      TCGA-35-4122 
"MYL10 WILD-TYPE" "MYL10 WILD-TYPE" "MYL10 WILD-TYPE" "MYL10 WILD-TYPE" 
     TCGA-35-4123      TCGA-35-5375      TCGA-38-4625      TCGA-38-4626 
"MYL10 WILD-TYPE" "MYL10 WILD-TYPE" "MYL10 WILD-TYPE" "MYL10 WILD-TYPE" 
     TCGA-38-4627      TCGA-38-4628      TCGA-38-4629      TCGA-38-4630 
"MYL10 WILD-TYPE" "MYL10 WILD-TYPE" "MYL10 WILD-TYPE" "MYL10 WILD-TYPE" 
     TCGA-38-4631      TCGA-38-4632      TCGA-38-6178      TCGA-44-2655 
"MYL10 WILD-TYPE" "MYL10 WILD-TYPE" "MYL10 WILD-TYPE" "MYL10 WILD-TYPE" 
     TCGA-44-2656      TCGA-44-2657      TCGA-44-2659      TCGA-44-2661 
"MYL10 WILD-TYPE" "MYL10 WILD-TYPE" "MYL10 WILD-TYPE" "MYL10 WILD-TYPE" 
     TCGA-44-2662      TCGA-44-2665      TCGA-44-2666      TCGA-44-2668 
"MYL10 WILD-TYPE" "MYL10 WILD-TYPE" "MYL10 WILD-TYPE" "MYL10 WILD-TYPE" 
     TCGA-44-3396      TCGA-44-3398      TCGA-44-3918      TCGA-44-3919 
"MYL10 WILD-TYPE" "MYL10 WILD-TYPE" "MYL10 WILD-TYPE" "MYL10 WILD-TYPE" 
     TCGA-44-4112      TCGA-44-5643      TCGA-44-5645      TCGA-44-6144 
"MYL10 WILD-TYPE" "MYL10 WILD-TYPE" "MYL10 WILD-TYPE" "MYL10 WILD-TYPE" 
     TCGA-44-6145      TCGA-44-6146      TCGA-44-6147      TCGA-44-6148 
"MYL10 WILD-TYPE" "MYL10 WILD-TYPE" "MYL10 WILD-TYPE" "MYL10 WILD-TYPE" 
     TCGA-44-6774      TCGA-44-6775      TCGA-44-6776      TCGA-44-6777 
"MYL10 WILD-TYPE" "MYL10 WILD-TYPE" "MYL10 WILD-TYPE" "MYL10 WILD-TYPE" 
     TCGA-44-6778      TCGA-44-6779      TCGA-49-4486      TCGA-49-4487 
"MYL10 WILD-TYPE" "MYL10 WILD-TYPE" "MYL10 WILD-TYPE" "MYL10 WILD-TYPE" 
     TCGA-49-4488      TCGA-49-4490      TCGA-49-4494      TCGA-49-4501 
"MYL10 WILD-TYPE" "MYL10 WILD-TYPE" "MYL10 WILD-TYPE" "MYL10 WILD-TYPE" 
     TCGA-49-4505      TCGA-49-4506      TCGA-49-4507      TCGA-49-4510 
"MYL10 WILD-TYPE" "MYL10 WILD-TYPE" "MYL10 WILD-TYPE" "MYL10 WILD-TYPE" 
     TCGA-49-4512      TCGA-49-4514      TCGA-49-6742      TCGA-49-6743 
"MYL10 WILD-TYPE" "MYL10 WILD-TYPE" "MYL10 WILD-TYPE" "MYL10 WILD-TYPE" 
     TCGA-49-6744      TCGA-49-6745      TCGA-50-5044      TCGA-50-5045 
"MYL10 WILD-TYPE" "MYL10 WILD-TYPE" "MYL10 WILD-TYPE" "MYL10 WILD-TYPE" 
     TCGA-50-5049      TCGA-50-5051      TCGA-50-5055      TCGA-50-5066 
"MYL10 WILD-TYPE" "MYL10 WILD-TYPE" "MYL10 WILD-TYPE" "MYL10 WILD-TYPE" 
     TCGA-50-5068      TCGA-50-5072      TCGA-50-5930      TCGA-50-5931 
"MYL10 WILD-TYPE" "MYL10 WILD-TYPE" "MYL10 WILD-TYPE" "MYL10 WILD-TYPE" 
     TCGA-50-5932      TCGA-50-5933      TCGA-50-5935      TCGA-50-5936 
"MYL10 WILD-TYPE" "MYL10 WILD-TYPE" "MYL10 WILD-TYPE" "MYL10 WILD-TYPE" 
     TCGA-50-5939      TCGA-50-5941      TCGA-50-5942      TCGA-50-5944 
"MYL10 WILD-TYPE" "MYL10 WILD-TYPE" "MYL10 WILD-TYPE" "MYL10 WILD-TYPE" 
     TCGA-50-5946      TCGA-50-6590      TCGA-50-6591      TCGA-50-6592 
"MYL10 WILD-TYPE" "MYL10 WILD-TYPE" "MYL10 WILD-TYPE" "MYL10 WILD-TYPE" 
     TCGA-50-6593      TCGA-50-6594      TCGA-50-6595      TCGA-50-6597 
"MYL10 WILD-TYPE" "MYL10 WILD-TYPE" "MYL10 WILD-TYPE" "MYL10 WILD-TYPE" 
     TCGA-55-1592      TCGA-55-1594      TCGA-55-1595      TCGA-55-1596 
"MYL10 WILD-TYPE" "MYL10 WILD-TYPE" "MYL10 WILD-TYPE" "MYL10 WILD-TYPE" 
     TCGA-55-5899      TCGA-55-6543      TCGA-55-6642      TCGA-55-6712 
"MYL10 WILD-TYPE" "MYL10 WILD-TYPE" "MYL10 WILD-TYPE" "MYL10 WILD-TYPE" 
     TCGA-64-1676      TCGA-64-1677      TCGA-64-1678      TCGA-64-1680 
"MYL10 WILD-TYPE" "MYL10 WILD-TYPE" "MYL10 WILD-TYPE" "MYL10 WILD-TYPE" 
     TCGA-64-5774      TCGA-64-5775      TCGA-64-5778      TCGA-64-5779 
"MYL10 WILD-TYPE" "MYL10 WILD-TYPE" "MYL10 WILD-TYPE" "MYL10 WILD-TYPE" 
     TCGA-64-5781      TCGA-64-5815      TCGA-67-3770      TCGA-67-3771 
"MYL10 WILD-TYPE" "MYL10 WILD-TYPE" "MYL10 WILD-TYPE" "MYL10 WILD-TYPE" 
     TCGA-67-3772      TCGA-67-3773      TCGA-67-3774      TCGA-67-6215 
"MYL10 WILD-TYPE" "MYL10 WILD-TYPE" "MYL10 WILD-TYPE" "MYL10 WILD-TYPE" 
     TCGA-67-6216      TCGA-67-6217      TCGA-71-6725      TCGA-73-4658 
"MYL10 WILD-TYPE" "MYL10 WILD-TYPE" "MYL10 WILD-TYPE" "MYL10 WILD-TYPE" 
     TCGA-73-4659      TCGA-73-4662      TCGA-73-4666      TCGA-73-4668 
"MYL10 WILD-TYPE" "MYL10 WILD-TYPE" "MYL10 WILD-TYPE" "MYL10 WILD-TYPE" 
     TCGA-73-4670      TCGA-73-4675      TCGA-73-4676      TCGA-73-4677 
"MYL10 WILD-TYPE" "MYL10 WILD-TYPE"   "MYL10 MUTATED" "MYL10 WILD-TYPE" 
     TCGA-91-6828      TCGA-91-6829      TCGA-91-6831      TCGA-91-6835 
"MYL10 WILD-TYPE" "MYL10 WILD-TYPE" "MYL10 WILD-TYPE" "MYL10 WILD-TYPE" 
     TCGA-91-6836 
"MYL10 WILD-TYPE" 
     TCGA-05-4249      TCGA-05-4250      TCGA-05-4382      TCGA-05-4384 
"MYL10 WILD-TYPE"   "MYL10 MUTATED" "MYL10 WILD-TYPE" "MYL10 WILD-TYPE" 
     TCGA-05-4390      TCGA-05-4396      TCGA-05-4397      TCGA-05-4398 
"MYL10 WILD-TYPE" "MYL10 WILD-TYPE" "MYL10 WILD-TYPE"   "MYL10 MUTATED" 
     TCGA-05-4402      TCGA-05-4405      TCGA-05-4415      TCGA-05-4417 
"MYL10 WILD-TYPE" "MYL10 WILD-TYPE" "MYL10 WILD-TYPE" "MYL10 WILD-TYPE" 
     TCGA-05-4418      TCGA-05-4420      TCGA-05-4424      TCGA-05-4426 
  "MYL10 MUTATED" "MYL10 WILD-TYPE" "MYL10 WILD-TYPE" "MYL10 WILD-TYPE" 
     TCGA-05-4427      TCGA-05-4430      TCGA-05-4432      TCGA-05-4433 
"MYL10 WILD-TYPE"   "MYL10 MUTATED" "MYL10 WILD-TYPE" "MYL10 WILD-TYPE" 
     TCGA-05-4434      TCGA-05-5420      TCGA-05-5423      TCGA-05-5425 
"MYL10 WILD-TYPE" "MYL10 WILD-TYPE" "MYL10 WILD-TYPE" "MYL10 WILD-TYPE" 
     TCGA-05-5429      TCGA-05-5715      TCGA-35-3615      TCGA-35-4122 
"MYL10 WILD-TYPE" "MYL10 WILD-TYPE" "MYL10 WILD-TYPE" "MYL10 WILD-TYPE" 
     TCGA-35-4123      TCGA-35-5375      TCGA-38-4625      TCGA-38-4626 
"MYL10 WILD-TYPE" "MYL10 WILD-TYPE" "MYL10 WILD-TYPE" "MYL10 WILD-TYPE" 
     TCGA-38-4627      TCGA-38-4628      TCGA-38-4629      TCGA-38-4630 
"MYL10 WILD-TYPE" "MYL10 WILD-TYPE" "MYL10 WILD-TYPE" "MYL10 WILD-TYPE" 
     TCGA-38-4631      TCGA-38-4632      TCGA-38-6178      TCGA-44-2655 
"MYL10 WILD-TYPE" "MYL10 WILD-TYPE" "MYL10 WILD-TYPE" "MYL10 WILD-TYPE" 
     TCGA-44-2656      TCGA-44-2657      TCGA-44-2659      TCGA-44-2661 
"MYL10 WILD-TYPE" "MYL10 WILD-TYPE" "MYL10 WILD-TYPE" "MYL10 WILD-TYPE" 
     TCGA-44-2662      TCGA-44-2665      TCGA-44-2666      TCGA-44-2668 
"MYL10 WILD-TYPE" "MYL10 WILD-TYPE" "MYL10 WILD-TYPE" "MYL10 WILD-TYPE" 
     TCGA-44-3396      TCGA-44-3398      TCGA-44-3918      TCGA-44-3919 
"MYL10 WILD-TYPE" "MYL10 WILD-TYPE" "MYL10 WILD-TYPE" "MYL10 WILD-TYPE" 
     TCGA-44-4112      TCGA-44-5643      TCGA-44-5645      TCGA-44-6144 
"MYL10 WILD-TYPE" "MYL10 WILD-TYPE" "MYL10 WILD-TYPE" "MYL10 WILD-TYPE" 
     TCGA-44-6145      TCGA-44-6146      TCGA-44-6147      TCGA-44-6148 
"MYL10 WILD-TYPE" "MYL10 WILD-TYPE" "MYL10 WILD-TYPE" "MYL10 WILD-TYPE" 
     TCGA-44-6774      TCGA-44-6775      TCGA-44-6776      TCGA-44-6777 
"MYL10 WILD-TYPE" "MYL10 WILD-TYPE" "MYL10 WILD-TYPE" "MYL10 WILD-TYPE" 
     TCGA-44-6778      TCGA-44-6779      TCGA-49-4486      TCGA-49-4487 
"MYL10 WILD-TYPE" "MYL10 WILD-TYPE" "MYL10 WILD-TYPE" "MYL10 WILD-TYPE" 
     TCGA-49-4488      TCGA-49-4490      TCGA-49-4494      TCGA-49-4501 
"MYL10 WILD-TYPE" "MYL10 WILD-TYPE" "MYL10 WILD-TYPE" "MYL10 WILD-TYPE" 
     TCGA-49-4505      TCGA-49-4506      TCGA-49-4507      TCGA-49-4510 
"MYL10 WILD-TYPE" "MYL10 WILD-TYPE" "MYL10 WILD-TYPE" "MYL10 WILD-TYPE" 
     TCGA-49-4512      TCGA-49-4514      TCGA-49-6742      TCGA-49-6743 
"MYL10 WILD-TYPE" "MYL10 WILD-TYPE" "MYL10 WILD-TYPE" "MYL10 WILD-TYPE" 
     TCGA-49-6744      TCGA-49-6745      TCGA-50-5044      TCGA-50-5045 
"MYL10 WILD-TYPE" "MYL10 WILD-TYPE" "MYL10 WILD-TYPE" "MYL10 WILD-TYPE" 
     TCGA-50-5049      TCGA-50-5051      TCGA-50-5055      TCGA-50-5066 
"MYL10 WILD-TYPE" "MYL10 WILD-TYPE" "MYL10 WILD-TYPE" "MYL10 WILD-TYPE" 
     TCGA-50-5068      TCGA-50-5072      TCGA-50-5930      TCGA-50-5931 
"MYL10 WILD-TYPE" "MYL10 WILD-TYPE" "MYL10 WILD-TYPE" "MYL10 WILD-TYPE" 
     TCGA-50-5932      TCGA-50-5933      TCGA-50-5935      TCGA-50-5936 
"MYL10 WILD-TYPE" "MYL10 WILD-TYPE" "MYL10 WILD-TYPE" "MYL10 WILD-TYPE" 
     TCGA-50-5939      TCGA-50-5941      TCGA-50-5942      TCGA-50-5944 
"MYL10 WILD-TYPE" "MYL10 WILD-TYPE" "MYL10 WILD-TYPE" "MYL10 WILD-TYPE" 
     TCGA-50-5946      TCGA-50-6590      TCGA-50-6591      TCGA-50-6592 
"MYL10 WILD-TYPE" "MYL10 WILD-TYPE" "MYL10 WILD-TYPE" "MYL10 WILD-TYPE" 
     TCGA-50-6593      TCGA-50-6594      TCGA-50-6595      TCGA-50-6597 
"MYL10 WILD-TYPE" "MYL10 WILD-TYPE" "MYL10 WILD-TYPE" "MYL10 WILD-TYPE" 
     TCGA-55-1592      TCGA-55-1594      TCGA-55-1595      TCGA-55-1596 
"MYL10 WILD-TYPE" "MYL10 WILD-TYPE" "MYL10 WILD-TYPE" "MYL10 WILD-TYPE" 
     TCGA-55-5899      TCGA-55-6543      TCGA-55-6642      TCGA-55-6712 
"MYL10 WILD-TYPE" "MYL10 WILD-TYPE" "MYL10 WILD-TYPE" "MYL10 WILD-TYPE" 
     TCGA-64-1676      TCGA-64-1677      TCGA-64-1678      TCGA-64-1680 
"MYL10 WILD-TYPE" "MYL10 WILD-TYPE" "MYL10 WILD-TYPE" "MYL10 WILD-TYPE" 
     TCGA-64-5774      TCGA-64-5775      TCGA-64-5778      TCGA-64-5779 
"MYL10 WILD-TYPE" "MYL10 WILD-TYPE" "MYL10 WILD-TYPE" "MYL10 WILD-TYPE" 
     TCGA-64-5781      TCGA-64-5815      TCGA-67-3770      TCGA-67-3771 
"MYL10 WILD-TYPE" "MYL10 WILD-TYPE" "MYL10 WILD-TYPE" "MYL10 WILD-TYPE" 
     TCGA-67-3772      TCGA-67-3773      TCGA-67-3774      TCGA-67-6215 
"MYL10 WILD-TYPE" "MYL10 WILD-TYPE" "MYL10 WILD-TYPE" "MYL10 WILD-TYPE" 
     TCGA-67-6216      TCGA-67-6217      TCGA-71-6725      TCGA-73-4658 
"MYL10 WILD-TYPE" "MYL10 WILD-TYPE" "MYL10 WILD-TYPE" "MYL10 WILD-TYPE" 
     TCGA-73-4659      TCGA-73-4662      TCGA-73-4666      TCGA-73-4668 
"MYL10 WILD-TYPE" "MYL10 WILD-TYPE" "MYL10 WILD-TYPE" "MYL10 WILD-TYPE" 
     TCGA-73-4670      TCGA-73-4675      TCGA-73-4676      TCGA-73-4677 
"MYL10 WILD-TYPE" "MYL10 WILD-TYPE"   "MYL10 MUTATED" "MYL10 WILD-TYPE" 
     TCGA-91-6828      TCGA-91-6829      TCGA-91-6831      TCGA-91-6835 
"MYL10 WILD-TYPE" "MYL10 WILD-TYPE" "MYL10 WILD-TYPE" "MYL10 WILD-TYPE" 
     TCGA-91-6836 
"MYL10 WILD-TYPE" 
     TCGA-05-4249      TCGA-05-4250      TCGA-05-4382      TCGA-05-4384 
"MYL10 WILD-TYPE"   "MYL10 MUTATED" "MYL10 WILD-TYPE" "MYL10 WILD-TYPE" 
     TCGA-05-4390      TCGA-05-4396      TCGA-05-4397      TCGA-05-4398 
"MYL10 WILD-TYPE" "MYL10 WILD-TYPE" "MYL10 WILD-TYPE"   "MYL10 MUTATED" 
     TCGA-05-4402      TCGA-05-4405      TCGA-05-4415      TCGA-05-4417 
"MYL10 WILD-TYPE" "MYL10 WILD-TYPE" "MYL10 WILD-TYPE" "MYL10 WILD-TYPE" 
     TCGA-05-4418      TCGA-05-4420      TCGA-05-4424      TCGA-05-4426 
  "MYL10 MUTATED" "MYL10 WILD-TYPE" "MYL10 WILD-TYPE" "MYL10 WILD-TYPE" 
     TCGA-05-4427      TCGA-05-4430      TCGA-05-4432      TCGA-05-4433 
"MYL10 WILD-TYPE"   "MYL10 MUTATED" "MYL10 WILD-TYPE" "MYL10 WILD-TYPE" 
     TCGA-05-4434      TCGA-05-5420      TCGA-05-5423      TCGA-05-5425 
"MYL10 WILD-TYPE" "MYL10 WILD-TYPE" "MYL10 WILD-TYPE" "MYL10 WILD-TYPE" 
     TCGA-05-5429      TCGA-05-5715      TCGA-35-3615      TCGA-35-4122 
"MYL10 WILD-TYPE" "MYL10 WILD-TYPE" "MYL10 WILD-TYPE" "MYL10 WILD-TYPE" 
     TCGA-35-4123      TCGA-35-5375      TCGA-38-4625      TCGA-38-4626 
"MYL10 WILD-TYPE" "MYL10 WILD-TYPE" "MYL10 WILD-TYPE" "MYL10 WILD-TYPE" 
     TCGA-38-4627      TCGA-38-4628      TCGA-38-4629      TCGA-38-4630 
"MYL10 WILD-TYPE" "MYL10 WILD-TYPE" "MYL10 WILD-TYPE" "MYL10 WILD-TYPE" 
     TCGA-38-4631      TCGA-38-4632      TCGA-38-6178      TCGA-44-2655 
"MYL10 WILD-TYPE" "MYL10 WILD-TYPE" "MYL10 WILD-TYPE" "MYL10 WILD-TYPE" 
     TCGA-44-2656      TCGA-44-2657      TCGA-44-2659      TCGA-44-2661 
"MYL10 WILD-TYPE" "MYL10 WILD-TYPE" "MYL10 WILD-TYPE" "MYL10 WILD-TYPE" 
     TCGA-44-2662      TCGA-44-2665      TCGA-44-2666      TCGA-44-2668 
"MYL10 WILD-TYPE" "MYL10 WILD-TYPE" "MYL10 WILD-TYPE" "MYL10 WILD-TYPE" 
     TCGA-44-3396      TCGA-44-3398      TCGA-44-3918      TCGA-44-3919 
"MYL10 WILD-TYPE" "MYL10 WILD-TYPE" "MYL10 WILD-TYPE" "MYL10 WILD-TYPE" 
     TCGA-44-4112      TCGA-44-5643      TCGA-44-5645      TCGA-44-6144 
"MYL10 WILD-TYPE" "MYL10 WILD-TYPE" "MYL10 WILD-TYPE" "MYL10 WILD-TYPE" 
     TCGA-44-6145      TCGA-44-6146      TCGA-44-6147      TCGA-44-6148 
"MYL10 WILD-TYPE" "MYL10 WILD-TYPE" "MYL10 WILD-TYPE" "MYL10 WILD-TYPE" 
     TCGA-44-6774      TCGA-44-6775      TCGA-44-6776      TCGA-44-6777 
"MYL10 WILD-TYPE" "MYL10 WILD-TYPE" "MYL10 WILD-TYPE" "MYL10 WILD-TYPE" 
     TCGA-44-6778      TCGA-44-6779      TCGA-49-4486      TCGA-49-4487 
"MYL10 WILD-TYPE" "MYL10 WILD-TYPE" "MYL10 WILD-TYPE" "MYL10 WILD-TYPE" 
     TCGA-49-4488      TCGA-49-4490      TCGA-49-4494      TCGA-49-4501 
"MYL10 WILD-TYPE" "MYL10 WILD-TYPE" "MYL10 WILD-TYPE" "MYL10 WILD-TYPE" 
     TCGA-49-4505      TCGA-49-4506      TCGA-49-4507      TCGA-49-4510 
"MYL10 WILD-TYPE" "MYL10 WILD-TYPE" "MYL10 WILD-TYPE" "MYL10 WILD-TYPE" 
     TCGA-49-4512      TCGA-49-4514      TCGA-49-6742      TCGA-49-6743 
"MYL10 WILD-TYPE" "MYL10 WILD-TYPE" "MYL10 WILD-TYPE" "MYL10 WILD-TYPE" 
     TCGA-49-6744      TCGA-49-6745      TCGA-50-5044      TCGA-50-5045 
"MYL10 WILD-TYPE" "MYL10 WILD-TYPE" "MYL10 WILD-TYPE" "MYL10 WILD-TYPE" 
     TCGA-50-5049      TCGA-50-5051      TCGA-50-5055      TCGA-50-5066 
"MYL10 WILD-TYPE" "MYL10 WILD-TYPE" "MYL10 WILD-TYPE" "MYL10 WILD-TYPE" 
     TCGA-50-5068      TCGA-50-5072      TCGA-50-5930      TCGA-50-5931 
"MYL10 WILD-TYPE" "MYL10 WILD-TYPE" "MYL10 WILD-TYPE" "MYL10 WILD-TYPE" 
     TCGA-50-5932      TCGA-50-5933      TCGA-50-5935      TCGA-50-5936 
"MYL10 WILD-TYPE" "MYL10 WILD-TYPE" "MYL10 WILD-TYPE" "MYL10 WILD-TYPE" 
     TCGA-50-5939      TCGA-50-5941      TCGA-50-5942      TCGA-50-5944 
"MYL10 WILD-TYPE" "MYL10 WILD-TYPE" "MYL10 WILD-TYPE" "MYL10 WILD-TYPE" 
     TCGA-50-5946      TCGA-50-6590      TCGA-50-6591      TCGA-50-6592 
"MYL10 WILD-TYPE" "MYL10 WILD-TYPE" "MYL10 WILD-TYPE" "MYL10 WILD-TYPE" 
     TCGA-50-6593      TCGA-50-6594      TCGA-50-6595      TCGA-50-6597 
"MYL10 WILD-TYPE" "MYL10 WILD-TYPE" "MYL10 WILD-TYPE" "MYL10 WILD-TYPE" 
     TCGA-55-1592      TCGA-55-1594      TCGA-55-1595      TCGA-55-1596 
"MYL10 WILD-TYPE" "MYL10 WILD-TYPE" "MYL10 WILD-TYPE" "MYL10 WILD-TYPE" 
     TCGA-55-5899      TCGA-55-6543      TCGA-55-6642      TCGA-55-6712 
"MYL10 WILD-TYPE" "MYL10 WILD-TYPE" "MYL10 WILD-TYPE" "MYL10 WILD-TYPE" 
     TCGA-64-1676      TCGA-64-1677      TCGA-64-1678      TCGA-64-1680 
"MYL10 WILD-TYPE" "MYL10 WILD-TYPE" "MYL10 WILD-TYPE" "MYL10 WILD-TYPE" 
     TCGA-64-5774      TCGA-64-5775      TCGA-64-5778      TCGA-64-5779 
"MYL10 WILD-TYPE" "MYL10 WILD-TYPE" "MYL10 WILD-TYPE" "MYL10 WILD-TYPE" 
     TCGA-64-5781      TCGA-64-5815      TCGA-67-3770      TCGA-67-3771 
"MYL10 WILD-TYPE" "MYL10 WILD-TYPE" "MYL10 WILD-TYPE" "MYL10 WILD-TYPE" 
     TCGA-67-3772      TCGA-67-3773      TCGA-67-3774      TCGA-67-6215 
"MYL10 WILD-TYPE" "MYL10 WILD-TYPE" "MYL10 WILD-TYPE" "MYL10 WILD-TYPE" 
     TCGA-67-6216      TCGA-67-6217      TCGA-71-6725      TCGA-73-4658 
"MYL10 WILD-TYPE" "MYL10 WILD-TYPE" "MYL10 WILD-TYPE" "MYL10 WILD-TYPE" 
     TCGA-73-4659      TCGA-73-4662      TCGA-73-4666      TCGA-73-4668 
"MYL10 WILD-TYPE" "MYL10 WILD-TYPE" "MYL10 WILD-TYPE" "MYL10 WILD-TYPE" 
     TCGA-73-4670      TCGA-73-4675      TCGA-73-4676      TCGA-73-4677 
"MYL10 WILD-TYPE" "MYL10 WILD-TYPE"   "MYL10 MUTATED" "MYL10 WILD-TYPE" 
     TCGA-91-6828      TCGA-91-6829      TCGA-91-6831      TCGA-91-6835 
"MYL10 WILD-TYPE" "MYL10 WILD-TYPE" "MYL10 WILD-TYPE" "MYL10 WILD-TYPE" 
     TCGA-91-6836 
"MYL10 WILD-TYPE" 
[1] "hr=" "1.4"
D69V2, continuous
D69V3, binary
[1] "tbl2"
                 cls
clus              [,1] [,2]
  MYL10 MUTATED      3    2
  MYL10 WILD-TYPE   90   77
        clus
vv       MYL10 MUTATED MYL10 WILD-TYPE
  FEMALE             3              90
  MALE               2              77
D69V4, continuous
[1] "Remove cluster labels:" "MYL10 MUTATED"         
clus
  MYL10 MUTATED MYL10 WILD-TYPE 
              1              11 
     TCGA-35-4122      TCGA-35-4123      TCGA-35-5375      TCGA-64-1677 
"MYL10 WILD-TYPE" "MYL10 WILD-TYPE" "MYL10 WILD-TYPE" "MYL10 WILD-TYPE" 
     TCGA-64-5778      TCGA-71-6725      TCGA-73-4659      TCGA-73-4662 
"MYL10 WILD-TYPE" "MYL10 WILD-TYPE" "MYL10 WILD-TYPE" "MYL10 WILD-TYPE" 
     TCGA-73-4666      TCGA-73-4668      TCGA-75-5122 
"MYL10 WILD-TYPE" "MYL10 WILD-TYPE" "MYL10 WILD-TYPE" 
D69V5, multiclass
D69V6, multiclass
    clus
vv   MYL10 MUTATED MYL10 WILD-TYPE
  T1             0              41
  T2             2             106
  T3             2              12
  T4             1               7
D69V7, multiclass
       clus
vv      MYL10 MUTATED MYL10 WILD-TYPE
  N0                1              94
  N1                2              35
  N2+N3             2              33
D69V8, multiclass
    clus
vv   MYL10 MUTATED MYL10 WILD-TYPE
  M0             5             132
  M1             0               9
  MX             0              22
D69V9, multiclass
     clus
vv    MYL10 MUTATED MYL10 WILD-TYPE
  I               1              87
  II              1              32
  III             3              36
  IV              0               9
D69V10, binary
[1] "tbl2"
                 cls
clus              [,1] [,2]
  MYL10 MUTATED      1    4
  MYL10 WILD-TYPE   15  152
     clus
vv    MYL10 MUTATED MYL10 WILD-TYPE
  NO              1              15
  YES             4             152
D69V11, continuous
D69V12, continuous
[1] "Remove cluster labels:" "MYL10 MUTATED"         
clus
  MYL10 MUTATED MYL10 WILD-TYPE 
              1              81 
     TCGA-05-4384      TCGA-05-4390      TCGA-05-4396      TCGA-05-4403 
"MYL10 WILD-TYPE" "MYL10 WILD-TYPE" "MYL10 WILD-TYPE" "MYL10 WILD-TYPE" 
     TCGA-05-4405      TCGA-05-4410      TCGA-05-4415      TCGA-05-4417 
"MYL10 WILD-TYPE" "MYL10 WILD-TYPE" "MYL10 WILD-TYPE" "MYL10 WILD-TYPE" 
     TCGA-05-4424      TCGA-05-4427      TCGA-05-4433      TCGA-05-5420 
"MYL10 WILD-TYPE" "MYL10 WILD-TYPE" "MYL10 WILD-TYPE" "MYL10 WILD-TYPE" 
     TCGA-05-5423      TCGA-05-5425      TCGA-05-5428      TCGA-35-4122 
"MYL10 WILD-TYPE" "MYL10 WILD-TYPE" "MYL10 WILD-TYPE" "MYL10 WILD-TYPE" 
     TCGA-35-4123      TCGA-35-5375      TCGA-38-4629      TCGA-38-4632 
"MYL10 WILD-TYPE" "MYL10 WILD-TYPE" "MYL10 WILD-TYPE" "MYL10 WILD-TYPE" 
     TCGA-44-2655      TCGA-44-2656      TCGA-44-2657      TCGA-44-2659 
"MYL10 WILD-TYPE" "MYL10 WILD-TYPE" "MYL10 WILD-TYPE" "MYL10 WILD-TYPE" 
     TCGA-44-2662      TCGA-44-2668      TCGA-44-3398      TCGA-44-3918 
"MYL10 WILD-TYPE" "MYL10 WILD-TYPE" "MYL10 WILD-TYPE" "MYL10 WILD-TYPE" 
     TCGA-44-4112      TCGA-44-5645      TCGA-44-6145      TCGA-44-6146 
"MYL10 WILD-TYPE" "MYL10 WILD-TYPE" "MYL10 WILD-TYPE" "MYL10 WILD-TYPE" 
     TCGA-44-6147      TCGA-44-6148      TCGA-44-6775      TCGA-44-6776 
"MYL10 WILD-TYPE" "MYL10 WILD-TYPE" "MYL10 WILD-TYPE" "MYL10 WILD-TYPE" 
     TCGA-44-6777      TCGA-44-6778      TCGA-44-6779      TCGA-49-4486 
"MYL10 WILD-TYPE" "MYL10 WILD-TYPE" "MYL10 WILD-TYPE" "MYL10 WILD-TYPE" 
     TCGA-49-4488      TCGA-49-4494      TCGA-49-4505      TCGA-49-4507 
"MYL10 WILD-TYPE" "MYL10 WILD-TYPE" "MYL10 WILD-TYPE" "MYL10 WILD-TYPE" 
     TCGA-50-5051      TCGA-50-5072      TCGA-50-5939      TCGA-50-5942 
"MYL10 WILD-TYPE" "MYL10 WILD-TYPE" "MYL10 WILD-TYPE" "MYL10 WILD-TYPE" 
     TCGA-50-5946      TCGA-50-6590      TCGA-50-6594      TCGA-50-6595 
"MYL10 WILD-TYPE" "MYL10 WILD-TYPE" "MYL10 WILD-TYPE" "MYL10 WILD-TYPE" 
     TCGA-55-1592      TCGA-55-1595      TCGA-55-6543      TCGA-55-6712 
"MYL10 WILD-TYPE" "MYL10 WILD-TYPE" "MYL10 WILD-TYPE" "MYL10 WILD-TYPE" 
     TCGA-64-1678      TCGA-64-1680      TCGA-64-5774      TCGA-64-5778 
"MYL10 WILD-TYPE" "MYL10 WILD-TYPE" "MYL10 WILD-TYPE" "MYL10 WILD-TYPE" 
     TCGA-64-5779      TCGA-64-5781      TCGA-64-5815      TCGA-67-6217 
"MYL10 WILD-TYPE" "MYL10 WILD-TYPE" "MYL10 WILD-TYPE" "MYL10 WILD-TYPE" 
     TCGA-73-4659      TCGA-73-4662      TCGA-73-4666      TCGA-73-4668 
"MYL10 WILD-TYPE" "MYL10 WILD-TYPE" "MYL10 WILD-TYPE" "MYL10 WILD-TYPE" 
     TCGA-73-4670      TCGA-73-4675      TCGA-73-4677      TCGA-75-5122 
"MYL10 WILD-TYPE" "MYL10 WILD-TYPE" "MYL10 WILD-TYPE" "MYL10 WILD-TYPE" 
     TCGA-75-5125      TCGA-75-5126      TCGA-75-5146      TCGA-75-6206 
"MYL10 WILD-TYPE" "MYL10 WILD-TYPE" "MYL10 WILD-TYPE" "MYL10 WILD-TYPE" 
     TCGA-75-6207      TCGA-80-5611      TCGA-91-6828      TCGA-91-6829 
"MYL10 WILD-TYPE" "MYL10 WILD-TYPE" "MYL10 WILD-TYPE" "MYL10 WILD-TYPE" 
     TCGA-91-6835 
"MYL10 WILD-TYPE" 
D69V13, multiclass
                                             clus
vv                                            MYL10 MUTATED MYL10 WILD-TYPE
  CURRENT REFORMED SMOKER FOR < OR = 15 YEARS             3              59
  CURRENT REFORMED SMOKER FOR > 15 YEARS                  0              46
  CURRENT SMOKER                                          2              26
  LIFELONG NON-SMOKER                                     0              24
D69V14, continuous
[1] "Remove cluster labels:" "MYL10 MUTATED"         
clus
  MYL10 MUTATED MYL10 WILD-TYPE 
              1              67 
     TCGA-05-4384      TCGA-05-4390      TCGA-05-4396      TCGA-05-4405 
"MYL10 WILD-TYPE" "MYL10 WILD-TYPE" "MYL10 WILD-TYPE" "MYL10 WILD-TYPE" 
     TCGA-05-4410      TCGA-05-4415      TCGA-05-4417      TCGA-05-4424 
"MYL10 WILD-TYPE" "MYL10 WILD-TYPE" "MYL10 WILD-TYPE" "MYL10 WILD-TYPE" 
     TCGA-05-4427      TCGA-05-4433      TCGA-05-5420      TCGA-05-5423 
"MYL10 WILD-TYPE" "MYL10 WILD-TYPE" "MYL10 WILD-TYPE" "MYL10 WILD-TYPE" 
     TCGA-05-5425      TCGA-05-5428      TCGA-35-4122      TCGA-35-4123 
"MYL10 WILD-TYPE" "MYL10 WILD-TYPE" "MYL10 WILD-TYPE" "MYL10 WILD-TYPE" 
     TCGA-35-5375      TCGA-38-4625      TCGA-38-4626      TCGA-44-2655 
"MYL10 WILD-TYPE" "MYL10 WILD-TYPE" "MYL10 WILD-TYPE" "MYL10 WILD-TYPE" 
     TCGA-44-2656      TCGA-44-2657      TCGA-44-2659      TCGA-44-2662 
"MYL10 WILD-TYPE" "MYL10 WILD-TYPE" "MYL10 WILD-TYPE" "MYL10 WILD-TYPE" 
     TCGA-44-2666      TCGA-44-2668      TCGA-44-3396      TCGA-44-3398 
"MYL10 WILD-TYPE" "MYL10 WILD-TYPE" "MYL10 WILD-TYPE" "MYL10 WILD-TYPE" 
     TCGA-44-3918      TCGA-44-4112      TCGA-44-5645      TCGA-44-6144 
"MYL10 WILD-TYPE" "MYL10 WILD-TYPE" "MYL10 WILD-TYPE" "MYL10 WILD-TYPE" 
     TCGA-44-6145      TCGA-44-6147      TCGA-44-6148      TCGA-44-6774 
"MYL10 WILD-TYPE" "MYL10 WILD-TYPE" "MYL10 WILD-TYPE" "MYL10 WILD-TYPE" 
     TCGA-44-6775      TCGA-44-6776      TCGA-44-6777      TCGA-44-6778 
"MYL10 WILD-TYPE" "MYL10 WILD-TYPE" "MYL10 WILD-TYPE" "MYL10 WILD-TYPE" 
     TCGA-44-6779      TCGA-49-4486      TCGA-49-4494      TCGA-49-4505 
"MYL10 WILD-TYPE" "MYL10 WILD-TYPE" "MYL10 WILD-TYPE" "MYL10 WILD-TYPE" 
     TCGA-55-1592      TCGA-55-1594      TCGA-55-1595      TCGA-55-1596 
"MYL10 WILD-TYPE" "MYL10 WILD-TYPE" "MYL10 WILD-TYPE" "MYL10 WILD-TYPE" 
     TCGA-55-5899      TCGA-55-6642      TCGA-55-6712      TCGA-64-1677 
"MYL10 WILD-TYPE" "MYL10 WILD-TYPE" "MYL10 WILD-TYPE" "MYL10 WILD-TYPE" 
     TCGA-64-1678      TCGA-64-1680      TCGA-64-5774      TCGA-64-5775 
"MYL10 WILD-TYPE" "MYL10 WILD-TYPE" "MYL10 WILD-TYPE" "MYL10 WILD-TYPE" 
     TCGA-64-5778      TCGA-64-5779      TCGA-64-5781      TCGA-73-4659 
"MYL10 WILD-TYPE" "MYL10 WILD-TYPE" "MYL10 WILD-TYPE" "MYL10 WILD-TYPE" 
     TCGA-73-4662      TCGA-73-4666      TCGA-73-4668      TCGA-73-4670 
"MYL10 WILD-TYPE" "MYL10 WILD-TYPE" "MYL10 WILD-TYPE" "MYL10 WILD-TYPE" 
     TCGA-73-4675      TCGA-91-6829      TCGA-91-6836 
"MYL10 WILD-TYPE" "MYL10 WILD-TYPE" "MYL10 WILD-TYPE" 

Clustering(70) Variable = ZSWIM2 MUTATION ANALYSIS
D70V1, survival
                  sevent
clus2               0  1
  ZSWIM2 MUTATED    7  5
  ZSWIM2 WILD-TYPE 92 45
  ZSWIM2 MUTATED ZSWIM2 WILD-TYPE 
              12              137 
  ZSWIM2 MUTATED ZSWIM2 WILD-TYPE 
               5               45 
$`ZSWIM2 MUTATED`
TCGA-05-4382 TCGA-05-4396 TCGA-05-4427 TCGA-38-4626 TCGA-44-3918 TCGA-44-6145 
       19.92         9.96        26.01        85.32         6.44         3.35 
TCGA-44-6777 TCGA-49-4501 TCGA-49-4514 TCGA-50-5049 TCGA-50-5933 TCGA-73-4658 
       32.45        46.72        43.20        48.82        77.88        52.57 

$`ZSWIM2 WILD-TYPE`
TCGA-05-4249 TCGA-05-4250 TCGA-05-4384 TCGA-05-4390 TCGA-05-4397 TCGA-05-4398 
       38.07         3.98        14.01        37.02        24.03        47.05 
TCGA-05-4402 TCGA-05-4405 TCGA-05-4415 TCGA-05-4417 TCGA-05-4418 TCGA-05-4420 
        8.02        20.05         2.96        14.93         8.98        29.95 
TCGA-05-4424 TCGA-05-4426 TCGA-05-4430 TCGA-05-4432 TCGA-05-4433 TCGA-05-4434 
       30.02        26.01        25.02        25.02        24.00        15.02 
TCGA-05-5420 TCGA-05-5423 TCGA-05-5425 TCGA-05-5429 TCGA-05-5715 TCGA-35-3615 
        1.02         4.96         2.96         0.99         2.04         0.46 
TCGA-35-4122 TCGA-35-4123 TCGA-35-5375 TCGA-38-4625 TCGA-38-4627 TCGA-38-4628 
        7.36         5.95         8.68        47.61        37.71        49.02 
TCGA-38-4629 TCGA-38-4630 TCGA-38-4631 TCGA-38-4632 TCGA-38-6178 TCGA-44-2655 
       28.37        35.28        11.64        44.61         5.19        18.87 
TCGA-44-2656 TCGA-44-2657 TCGA-44-2659 TCGA-44-2661 TCGA-44-2662 TCGA-44-2665 
       19.10        13.15        17.39         3.39        15.78        13.15 
TCGA-44-2666 TCGA-44-2668 TCGA-44-3396 TCGA-44-3398 TCGA-44-3919 TCGA-44-4112 
        3.19         8.09        10.22         8.32         6.21         4.60 
TCGA-44-5643 TCGA-44-5645 TCGA-44-6144 TCGA-44-6146 TCGA-44-6147 TCGA-44-6148 
        3.48         6.84         0.30         9.93         7.76         3.12 
TCGA-44-6774 TCGA-44-6775 TCGA-44-6776 TCGA-44-6778 TCGA-44-6779 TCGA-49-4486 
        5.42         2.70        63.72        36.49        16.41        76.21 
TCGA-49-4487 TCGA-49-4488 TCGA-49-4490 TCGA-49-4494 TCGA-49-4505 TCGA-49-4506 
       28.11        28.57        12.66        35.54        14.07        32.84 
TCGA-49-4507 TCGA-49-4510 TCGA-49-4512 TCGA-49-6742 TCGA-49-6743 TCGA-49-6744 
        8.81        29.46        29.75        15.02        12.13        12.99 
TCGA-49-6745 TCGA-50-5044 TCGA-50-5045 TCGA-50-5051 TCGA-50-5055 TCGA-50-5066 
        4.93        20.48        71.47        14.96        25.81         9.76 
TCGA-50-5068 TCGA-50-5072 TCGA-50-5930 TCGA-50-5931 TCGA-50-5932 TCGA-50-5935 
       49.28         8.05         9.27         8.78        35.87        21.47 
TCGA-50-5936 TCGA-50-5939 TCGA-50-5941 TCGA-50-5942 TCGA-50-5944 TCGA-50-5946 
        8.45        15.12         9.37         4.44        12.26        11.47 
TCGA-50-6590 TCGA-50-6591 TCGA-50-6592 TCGA-50-6593 TCGA-50-6594 TCGA-50-6595 
       42.31         3.88        25.51        11.05        12.16         6.21 
TCGA-50-6597 TCGA-55-1592 TCGA-55-1594 TCGA-55-1595 TCGA-55-1596 TCGA-55-5899 
       33.37        23.05        38.73        48.62        45.17         2.86 
TCGA-55-6543 TCGA-55-6642 TCGA-55-6712 TCGA-64-1676 TCGA-64-1677 TCGA-64-1678 
        0.07        32.61         0.79        56.81        20.65        39.09 
TCGA-64-1680 TCGA-64-5774 TCGA-64-5775 TCGA-64-5778 TCGA-64-5779 TCGA-64-5781 
       37.02        83.84         0.10        30.44        16.67        39.52 
TCGA-64-5815 TCGA-67-3770 TCGA-67-3771 TCGA-67-3772 TCGA-67-3773 TCGA-67-3774 
        7.33         0.99         1.97         0.59         2.04         0.59 
TCGA-67-6215 TCGA-67-6216 TCGA-67-6217 TCGA-71-6725 TCGA-73-4659 TCGA-73-4662 
        0.89         0.69        13.87         2.01        23.38        29.95 
TCGA-73-4666 TCGA-73-4668 TCGA-73-4670 TCGA-73-4675 TCGA-73-4676 TCGA-73-4677 
       20.28        15.35         0.46         1.32         4.01         1.25 
TCGA-91-6828 TCGA-91-6829 TCGA-91-6831 TCGA-91-6835 TCGA-91-6836 
        1.22        41.33         1.28         1.15         0.36 

  ZSWIM2 MUTATED ZSWIM2 WILD-TYPE 
            3.35             0.07 
  ZSWIM2 MUTATED ZSWIM2 WILD-TYPE 
           85.32            83.84 
  ZSWIM2 MUTATED ZSWIM2 WILD-TYPE 
          37.825           12.990 
[1] "3.4 - 85.3 (37.8)" "0.1 - 83.8 (13.0)"
      TCGA-05-4249       TCGA-05-4250       TCGA-05-4382       TCGA-05-4384 
"ZSWIM2 WILD-TYPE" "ZSWIM2 WILD-TYPE"   "ZSWIM2 MUTATED" "ZSWIM2 WILD-TYPE" 
      TCGA-05-4390       TCGA-05-4396       TCGA-05-4397       TCGA-05-4398 
"ZSWIM2 WILD-TYPE"   "ZSWIM2 MUTATED" "ZSWIM2 WILD-TYPE" "ZSWIM2 WILD-TYPE" 
      TCGA-05-4402       TCGA-05-4405       TCGA-05-4415       TCGA-05-4417 
"ZSWIM2 WILD-TYPE" "ZSWIM2 WILD-TYPE" "ZSWIM2 WILD-TYPE" "ZSWIM2 WILD-TYPE" 
      TCGA-05-4418       TCGA-05-4420       TCGA-05-4424       TCGA-05-4426 
"ZSWIM2 WILD-TYPE" "ZSWIM2 WILD-TYPE" "ZSWIM2 WILD-TYPE" "ZSWIM2 WILD-TYPE" 
      TCGA-05-4427       TCGA-05-4430       TCGA-05-4432       TCGA-05-4433 
  "ZSWIM2 MUTATED" "ZSWIM2 WILD-TYPE" "ZSWIM2 WILD-TYPE" "ZSWIM2 WILD-TYPE" 
      TCGA-05-4434       TCGA-05-5420       TCGA-05-5423       TCGA-05-5425 
"ZSWIM2 WILD-TYPE" "ZSWIM2 WILD-TYPE" "ZSWIM2 WILD-TYPE" "ZSWIM2 WILD-TYPE" 
      TCGA-05-5429       TCGA-05-5715       TCGA-35-3615       TCGA-35-4122 
"ZSWIM2 WILD-TYPE" "ZSWIM2 WILD-TYPE" "ZSWIM2 WILD-TYPE" "ZSWIM2 WILD-TYPE" 
      TCGA-35-4123       TCGA-35-5375       TCGA-38-4625       TCGA-38-4626 
"ZSWIM2 WILD-TYPE" "ZSWIM2 WILD-TYPE" "ZSWIM2 WILD-TYPE"   "ZSWIM2 MUTATED" 
      TCGA-38-4627       TCGA-38-4628       TCGA-38-4629       TCGA-38-4630 
"ZSWIM2 WILD-TYPE" "ZSWIM2 WILD-TYPE" "ZSWIM2 WILD-TYPE" "ZSWIM2 WILD-TYPE" 
      TCGA-38-4631       TCGA-38-4632       TCGA-38-6178       TCGA-44-2655 
"ZSWIM2 WILD-TYPE" "ZSWIM2 WILD-TYPE" "ZSWIM2 WILD-TYPE" "ZSWIM2 WILD-TYPE" 
      TCGA-44-2656       TCGA-44-2657       TCGA-44-2659       TCGA-44-2661 
"ZSWIM2 WILD-TYPE" "ZSWIM2 WILD-TYPE" "ZSWIM2 WILD-TYPE" "ZSWIM2 WILD-TYPE" 
      TCGA-44-2662       TCGA-44-2665       TCGA-44-2666       TCGA-44-2668 
"ZSWIM2 WILD-TYPE" "ZSWIM2 WILD-TYPE" "ZSWIM2 WILD-TYPE" "ZSWIM2 WILD-TYPE" 
      TCGA-44-3396       TCGA-44-3398       TCGA-44-3918       TCGA-44-3919 
"ZSWIM2 WILD-TYPE" "ZSWIM2 WILD-TYPE"   "ZSWIM2 MUTATED" "ZSWIM2 WILD-TYPE" 
      TCGA-44-4112       TCGA-44-5643       TCGA-44-5645       TCGA-44-6144 
"ZSWIM2 WILD-TYPE" "ZSWIM2 WILD-TYPE" "ZSWIM2 WILD-TYPE" "ZSWIM2 WILD-TYPE" 
      TCGA-44-6145       TCGA-44-6146       TCGA-44-6147       TCGA-44-6148 
  "ZSWIM2 MUTATED" "ZSWIM2 WILD-TYPE" "ZSWIM2 WILD-TYPE" "ZSWIM2 WILD-TYPE" 
      TCGA-44-6774       TCGA-44-6775       TCGA-44-6776       TCGA-44-6777 
"ZSWIM2 WILD-TYPE" "ZSWIM2 WILD-TYPE" "ZSWIM2 WILD-TYPE"   "ZSWIM2 MUTATED" 
      TCGA-44-6778       TCGA-44-6779       TCGA-49-4486       TCGA-49-4487 
"ZSWIM2 WILD-TYPE" "ZSWIM2 WILD-TYPE" "ZSWIM2 WILD-TYPE" "ZSWIM2 WILD-TYPE" 
      TCGA-49-4488       TCGA-49-4490       TCGA-49-4494       TCGA-49-4501 
"ZSWIM2 WILD-TYPE" "ZSWIM2 WILD-TYPE" "ZSWIM2 WILD-TYPE"   "ZSWIM2 MUTATED" 
      TCGA-49-4505       TCGA-49-4506       TCGA-49-4507       TCGA-49-4510 
"ZSWIM2 WILD-TYPE" "ZSWIM2 WILD-TYPE" "ZSWIM2 WILD-TYPE" "ZSWIM2 WILD-TYPE" 
      TCGA-49-4512       TCGA-49-4514       TCGA-49-6742       TCGA-49-6743 
"ZSWIM2 WILD-TYPE"   "ZSWIM2 MUTATED" "ZSWIM2 WILD-TYPE" "ZSWIM2 WILD-TYPE" 
      TCGA-49-6744       TCGA-49-6745       TCGA-50-5044       TCGA-50-5045 
"ZSWIM2 WILD-TYPE" "ZSWIM2 WILD-TYPE" "ZSWIM2 WILD-TYPE" "ZSWIM2 WILD-TYPE" 
      TCGA-50-5049       TCGA-50-5051       TCGA-50-5055       TCGA-50-5066 
  "ZSWIM2 MUTATED" "ZSWIM2 WILD-TYPE" "ZSWIM2 WILD-TYPE" "ZSWIM2 WILD-TYPE" 
      TCGA-50-5068       TCGA-50-5072       TCGA-50-5930       TCGA-50-5931 
"ZSWIM2 WILD-TYPE" "ZSWIM2 WILD-TYPE" "ZSWIM2 WILD-TYPE" "ZSWIM2 WILD-TYPE" 
      TCGA-50-5932       TCGA-50-5933       TCGA-50-5935       TCGA-50-5936 
"ZSWIM2 WILD-TYPE"   "ZSWIM2 MUTATED" "ZSWIM2 WILD-TYPE" "ZSWIM2 WILD-TYPE" 
      TCGA-50-5939       TCGA-50-5941       TCGA-50-5942       TCGA-50-5944 
"ZSWIM2 WILD-TYPE" "ZSWIM2 WILD-TYPE" "ZSWIM2 WILD-TYPE" "ZSWIM2 WILD-TYPE" 
      TCGA-50-5946       TCGA-50-6590       TCGA-50-6591       TCGA-50-6592 
"ZSWIM2 WILD-TYPE" "ZSWIM2 WILD-TYPE" "ZSWIM2 WILD-TYPE" "ZSWIM2 WILD-TYPE" 
      TCGA-50-6593       TCGA-50-6594       TCGA-50-6595       TCGA-50-6597 
"ZSWIM2 WILD-TYPE" "ZSWIM2 WILD-TYPE" "ZSWIM2 WILD-TYPE" "ZSWIM2 WILD-TYPE" 
      TCGA-55-1592       TCGA-55-1594       TCGA-55-1595       TCGA-55-1596 
"ZSWIM2 WILD-TYPE" "ZSWIM2 WILD-TYPE" "ZSWIM2 WILD-TYPE" "ZSWIM2 WILD-TYPE" 
      TCGA-55-5899       TCGA-55-6543       TCGA-55-6642       TCGA-55-6712 
"ZSWIM2 WILD-TYPE" "ZSWIM2 WILD-TYPE" "ZSWIM2 WILD-TYPE" "ZSWIM2 WILD-TYPE" 
      TCGA-64-1676       TCGA-64-1677       TCGA-64-1678       TCGA-64-1680 
"ZSWIM2 WILD-TYPE" "ZSWIM2 WILD-TYPE" "ZSWIM2 WILD-TYPE" "ZSWIM2 WILD-TYPE" 
      TCGA-64-5774       TCGA-64-5775       TCGA-64-5778       TCGA-64-5779 
"ZSWIM2 WILD-TYPE" "ZSWIM2 WILD-TYPE" "ZSWIM2 WILD-TYPE" "ZSWIM2 WILD-TYPE" 
      TCGA-64-5781       TCGA-64-5815       TCGA-67-3770       TCGA-67-3771 
"ZSWIM2 WILD-TYPE" "ZSWIM2 WILD-TYPE" "ZSWIM2 WILD-TYPE" "ZSWIM2 WILD-TYPE" 
      TCGA-67-3772       TCGA-67-3773       TCGA-67-3774       TCGA-67-6215 
"ZSWIM2 WILD-TYPE" "ZSWIM2 WILD-TYPE" "ZSWIM2 WILD-TYPE" "ZSWIM2 WILD-TYPE" 
      TCGA-67-6216       TCGA-67-6217       TCGA-71-6725       TCGA-73-4658 
"ZSWIM2 WILD-TYPE" "ZSWIM2 WILD-TYPE" "ZSWIM2 WILD-TYPE"   "ZSWIM2 MUTATED" 
      TCGA-73-4659       TCGA-73-4662       TCGA-73-4666       TCGA-73-4668 
"ZSWIM2 WILD-TYPE" "ZSWIM2 WILD-TYPE" "ZSWIM2 WILD-TYPE" "ZSWIM2 WILD-TYPE" 
      TCGA-73-4670       TCGA-73-4675       TCGA-73-4676       TCGA-73-4677 
"ZSWIM2 WILD-TYPE" "ZSWIM2 WILD-TYPE" "ZSWIM2 WILD-TYPE" "ZSWIM2 WILD-TYPE" 
      TCGA-91-6828       TCGA-91-6829       TCGA-91-6831       TCGA-91-6835 
"ZSWIM2 WILD-TYPE" "ZSWIM2 WILD-TYPE" "ZSWIM2 WILD-TYPE" "ZSWIM2 WILD-TYPE" 
      TCGA-91-6836 
"ZSWIM2 WILD-TYPE" 
      TCGA-05-4249       TCGA-05-4250       TCGA-05-4382       TCGA-05-4384 
"ZSWIM2 WILD-TYPE" "ZSWIM2 WILD-TYPE"   "ZSWIM2 MUTATED" "ZSWIM2 WILD-TYPE" 
      TCGA-05-4390       TCGA-05-4396       TCGA-05-4397       TCGA-05-4398 
"ZSWIM2 WILD-TYPE"   "ZSWIM2 MUTATED" "ZSWIM2 WILD-TYPE" "ZSWIM2 WILD-TYPE" 
      TCGA-05-4402       TCGA-05-4405       TCGA-05-4415       TCGA-05-4417 
"ZSWIM2 WILD-TYPE" "ZSWIM2 WILD-TYPE" "ZSWIM2 WILD-TYPE" "ZSWIM2 WILD-TYPE" 
      TCGA-05-4418       TCGA-05-4420       TCGA-05-4424       TCGA-05-4426 
"ZSWIM2 WILD-TYPE" "ZSWIM2 WILD-TYPE" "ZSWIM2 WILD-TYPE" "ZSWIM2 WILD-TYPE" 
      TCGA-05-4427       TCGA-05-4430       TCGA-05-4432       TCGA-05-4433 
  "ZSWIM2 MUTATED" "ZSWIM2 WILD-TYPE" "ZSWIM2 WILD-TYPE" "ZSWIM2 WILD-TYPE" 
      TCGA-05-4434       TCGA-05-5420       TCGA-05-5423       TCGA-05-5425 
"ZSWIM2 WILD-TYPE" "ZSWIM2 WILD-TYPE" "ZSWIM2 WILD-TYPE" "ZSWIM2 WILD-TYPE" 
      TCGA-05-5429       TCGA-05-5715       TCGA-35-3615       TCGA-35-4122 
"ZSWIM2 WILD-TYPE" "ZSWIM2 WILD-TYPE" "ZSWIM2 WILD-TYPE" "ZSWIM2 WILD-TYPE" 
      TCGA-35-4123       TCGA-35-5375       TCGA-38-4625       TCGA-38-4626 
"ZSWIM2 WILD-TYPE" "ZSWIM2 WILD-TYPE" "ZSWIM2 WILD-TYPE"   "ZSWIM2 MUTATED" 
      TCGA-38-4627       TCGA-38-4628       TCGA-38-4629       TCGA-38-4630 
"ZSWIM2 WILD-TYPE" "ZSWIM2 WILD-TYPE" "ZSWIM2 WILD-TYPE" "ZSWIM2 WILD-TYPE" 
      TCGA-38-4631       TCGA-38-4632       TCGA-38-6178       TCGA-44-2655 
"ZSWIM2 WILD-TYPE" "ZSWIM2 WILD-TYPE" "ZSWIM2 WILD-TYPE" "ZSWIM2 WILD-TYPE" 
      TCGA-44-2656       TCGA-44-2657       TCGA-44-2659       TCGA-44-2661 
"ZSWIM2 WILD-TYPE" "ZSWIM2 WILD-TYPE" "ZSWIM2 WILD-TYPE" "ZSWIM2 WILD-TYPE" 
      TCGA-44-2662       TCGA-44-2665       TCGA-44-2666       TCGA-44-2668 
"ZSWIM2 WILD-TYPE" "ZSWIM2 WILD-TYPE" "ZSWIM2 WILD-TYPE" "ZSWIM2 WILD-TYPE" 
      TCGA-44-3396       TCGA-44-3398       TCGA-44-3918       TCGA-44-3919 
"ZSWIM2 WILD-TYPE" "ZSWIM2 WILD-TYPE"   "ZSWIM2 MUTATED" "ZSWIM2 WILD-TYPE" 
      TCGA-44-4112       TCGA-44-5643       TCGA-44-5645       TCGA-44-6144 
"ZSWIM2 WILD-TYPE" "ZSWIM2 WILD-TYPE" "ZSWIM2 WILD-TYPE" "ZSWIM2 WILD-TYPE" 
      TCGA-44-6145       TCGA-44-6146       TCGA-44-6147       TCGA-44-6148 
  "ZSWIM2 MUTATED" "ZSWIM2 WILD-TYPE" "ZSWIM2 WILD-TYPE" "ZSWIM2 WILD-TYPE" 
      TCGA-44-6774       TCGA-44-6775       TCGA-44-6776       TCGA-44-6777 
"ZSWIM2 WILD-TYPE" "ZSWIM2 WILD-TYPE" "ZSWIM2 WILD-TYPE"   "ZSWIM2 MUTATED" 
      TCGA-44-6778       TCGA-44-6779       TCGA-49-4486       TCGA-49-4487 
"ZSWIM2 WILD-TYPE" "ZSWIM2 WILD-TYPE" "ZSWIM2 WILD-TYPE" "ZSWIM2 WILD-TYPE" 
      TCGA-49-4488       TCGA-49-4490       TCGA-49-4494       TCGA-49-4501 
"ZSWIM2 WILD-TYPE" "ZSWIM2 WILD-TYPE" "ZSWIM2 WILD-TYPE"   "ZSWIM2 MUTATED" 
      TCGA-49-4505       TCGA-49-4506       TCGA-49-4507       TCGA-49-4510 
"ZSWIM2 WILD-TYPE" "ZSWIM2 WILD-TYPE" "ZSWIM2 WILD-TYPE" "ZSWIM2 WILD-TYPE" 
      TCGA-49-4512       TCGA-49-4514       TCGA-49-6742       TCGA-49-6743 
"ZSWIM2 WILD-TYPE"   "ZSWIM2 MUTATED" "ZSWIM2 WILD-TYPE" "ZSWIM2 WILD-TYPE" 
      TCGA-49-6744       TCGA-49-6745       TCGA-50-5044       TCGA-50-5045 
"ZSWIM2 WILD-TYPE" "ZSWIM2 WILD-TYPE" "ZSWIM2 WILD-TYPE" "ZSWIM2 WILD-TYPE" 
      TCGA-50-5049       TCGA-50-5051       TCGA-50-5055       TCGA-50-5066 
  "ZSWIM2 MUTATED" "ZSWIM2 WILD-TYPE" "ZSWIM2 WILD-TYPE" "ZSWIM2 WILD-TYPE" 
      TCGA-50-5068       TCGA-50-5072       TCGA-50-5930       TCGA-50-5931 
"ZSWIM2 WILD-TYPE" "ZSWIM2 WILD-TYPE" "ZSWIM2 WILD-TYPE" "ZSWIM2 WILD-TYPE" 
      TCGA-50-5932       TCGA-50-5933       TCGA-50-5935       TCGA-50-5936 
"ZSWIM2 WILD-TYPE"   "ZSWIM2 MUTATED" "ZSWIM2 WILD-TYPE" "ZSWIM2 WILD-TYPE" 
      TCGA-50-5939       TCGA-50-5941       TCGA-50-5942       TCGA-50-5944 
"ZSWIM2 WILD-TYPE" "ZSWIM2 WILD-TYPE" "ZSWIM2 WILD-TYPE" "ZSWIM2 WILD-TYPE" 
      TCGA-50-5946       TCGA-50-6590       TCGA-50-6591       TCGA-50-6592 
"ZSWIM2 WILD-TYPE" "ZSWIM2 WILD-TYPE" "ZSWIM2 WILD-TYPE" "ZSWIM2 WILD-TYPE" 
      TCGA-50-6593       TCGA-50-6594       TCGA-50-6595       TCGA-50-6597 
"ZSWIM2 WILD-TYPE" "ZSWIM2 WILD-TYPE" "ZSWIM2 WILD-TYPE" "ZSWIM2 WILD-TYPE" 
      TCGA-55-1592       TCGA-55-1594       TCGA-55-1595       TCGA-55-1596 
"ZSWIM2 WILD-TYPE" "ZSWIM2 WILD-TYPE" "ZSWIM2 WILD-TYPE" "ZSWIM2 WILD-TYPE" 
      TCGA-55-5899       TCGA-55-6543       TCGA-55-6642       TCGA-55-6712 
"ZSWIM2 WILD-TYPE" "ZSWIM2 WILD-TYPE" "ZSWIM2 WILD-TYPE" "ZSWIM2 WILD-TYPE" 
      TCGA-64-1676       TCGA-64-1677       TCGA-64-1678       TCGA-64-1680 
"ZSWIM2 WILD-TYPE" "ZSWIM2 WILD-TYPE" "ZSWIM2 WILD-TYPE" "ZSWIM2 WILD-TYPE" 
      TCGA-64-5774       TCGA-64-5775       TCGA-64-5778       TCGA-64-5779 
"ZSWIM2 WILD-TYPE" "ZSWIM2 WILD-TYPE" "ZSWIM2 WILD-TYPE" "ZSWIM2 WILD-TYPE" 
      TCGA-64-5781       TCGA-64-5815       TCGA-67-3770       TCGA-67-3771 
"ZSWIM2 WILD-TYPE" "ZSWIM2 WILD-TYPE" "ZSWIM2 WILD-TYPE" "ZSWIM2 WILD-TYPE" 
      TCGA-67-3772       TCGA-67-3773       TCGA-67-3774       TCGA-67-6215 
"ZSWIM2 WILD-TYPE" "ZSWIM2 WILD-TYPE" "ZSWIM2 WILD-TYPE" "ZSWIM2 WILD-TYPE" 
      TCGA-67-6216       TCGA-67-6217       TCGA-71-6725       TCGA-73-4658 
"ZSWIM2 WILD-TYPE" "ZSWIM2 WILD-TYPE" "ZSWIM2 WILD-TYPE"   "ZSWIM2 MUTATED" 
      TCGA-73-4659       TCGA-73-4662       TCGA-73-4666       TCGA-73-4668 
"ZSWIM2 WILD-TYPE" "ZSWIM2 WILD-TYPE" "ZSWIM2 WILD-TYPE" "ZSWIM2 WILD-TYPE" 
      TCGA-73-4670       TCGA-73-4675       TCGA-73-4676       TCGA-73-4677 
"ZSWIM2 WILD-TYPE" "ZSWIM2 WILD-TYPE" "ZSWIM2 WILD-TYPE" "ZSWIM2 WILD-TYPE" 
      TCGA-91-6828       TCGA-91-6829       TCGA-91-6831       TCGA-91-6835 
"ZSWIM2 WILD-TYPE" "ZSWIM2 WILD-TYPE" "ZSWIM2 WILD-TYPE" "ZSWIM2 WILD-TYPE" 
      TCGA-91-6836 
"ZSWIM2 WILD-TYPE" 
      TCGA-05-4249       TCGA-05-4250       TCGA-05-4382       TCGA-05-4384 
"ZSWIM2 WILD-TYPE" "ZSWIM2 WILD-TYPE"   "ZSWIM2 MUTATED" "ZSWIM2 WILD-TYPE" 
      TCGA-05-4390       TCGA-05-4396       TCGA-05-4397       TCGA-05-4398 
"ZSWIM2 WILD-TYPE"   "ZSWIM2 MUTATED" "ZSWIM2 WILD-TYPE" "ZSWIM2 WILD-TYPE" 
      TCGA-05-4402       TCGA-05-4405       TCGA-05-4415       TCGA-05-4417 
"ZSWIM2 WILD-TYPE" "ZSWIM2 WILD-TYPE" "ZSWIM2 WILD-TYPE" "ZSWIM2 WILD-TYPE" 
      TCGA-05-4418       TCGA-05-4420       TCGA-05-4424       TCGA-05-4426 
"ZSWIM2 WILD-TYPE" "ZSWIM2 WILD-TYPE" "ZSWIM2 WILD-TYPE" "ZSWIM2 WILD-TYPE" 
      TCGA-05-4427       TCGA-05-4430       TCGA-05-4432       TCGA-05-4433 
  "ZSWIM2 MUTATED" "ZSWIM2 WILD-TYPE" "ZSWIM2 WILD-TYPE" "ZSWIM2 WILD-TYPE" 
      TCGA-05-4434       TCGA-05-5420       TCGA-05-5423       TCGA-05-5425 
"ZSWIM2 WILD-TYPE" "ZSWIM2 WILD-TYPE" "ZSWIM2 WILD-TYPE" "ZSWIM2 WILD-TYPE" 
      TCGA-05-5429       TCGA-05-5715       TCGA-35-3615       TCGA-35-4122 
"ZSWIM2 WILD-TYPE" "ZSWIM2 WILD-TYPE" "ZSWIM2 WILD-TYPE" "ZSWIM2 WILD-TYPE" 
      TCGA-35-4123       TCGA-35-5375       TCGA-38-4625       TCGA-38-4626 
"ZSWIM2 WILD-TYPE" "ZSWIM2 WILD-TYPE" "ZSWIM2 WILD-TYPE"   "ZSWIM2 MUTATED" 
      TCGA-38-4627       TCGA-38-4628       TCGA-38-4629       TCGA-38-4630 
"ZSWIM2 WILD-TYPE" "ZSWIM2 WILD-TYPE" "ZSWIM2 WILD-TYPE" "ZSWIM2 WILD-TYPE" 
      TCGA-38-4631       TCGA-38-4632       TCGA-38-6178       TCGA-44-2655 
"ZSWIM2 WILD-TYPE" "ZSWIM2 WILD-TYPE" "ZSWIM2 WILD-TYPE" "ZSWIM2 WILD-TYPE" 
      TCGA-44-2656       TCGA-44-2657       TCGA-44-2659       TCGA-44-2661 
"ZSWIM2 WILD-TYPE" "ZSWIM2 WILD-TYPE" "ZSWIM2 WILD-TYPE" "ZSWIM2 WILD-TYPE" 
      TCGA-44-2662       TCGA-44-2665       TCGA-44-2666       TCGA-44-2668 
"ZSWIM2 WILD-TYPE" "ZSWIM2 WILD-TYPE" "ZSWIM2 WILD-TYPE" "ZSWIM2 WILD-TYPE" 
      TCGA-44-3396       TCGA-44-3398       TCGA-44-3918       TCGA-44-3919 
"ZSWIM2 WILD-TYPE" "ZSWIM2 WILD-TYPE"   "ZSWIM2 MUTATED" "ZSWIM2 WILD-TYPE" 
      TCGA-44-4112       TCGA-44-5643       TCGA-44-5645       TCGA-44-6144 
"ZSWIM2 WILD-TYPE" "ZSWIM2 WILD-TYPE" "ZSWIM2 WILD-TYPE" "ZSWIM2 WILD-TYPE" 
      TCGA-44-6145       TCGA-44-6146       TCGA-44-6147       TCGA-44-6148 
  "ZSWIM2 MUTATED" "ZSWIM2 WILD-TYPE" "ZSWIM2 WILD-TYPE" "ZSWIM2 WILD-TYPE" 
      TCGA-44-6774       TCGA-44-6775       TCGA-44-6776       TCGA-44-6777 
"ZSWIM2 WILD-TYPE" "ZSWIM2 WILD-TYPE" "ZSWIM2 WILD-TYPE"   "ZSWIM2 MUTATED" 
      TCGA-44-6778       TCGA-44-6779       TCGA-49-4486       TCGA-49-4487 
"ZSWIM2 WILD-TYPE" "ZSWIM2 WILD-TYPE" "ZSWIM2 WILD-TYPE" "ZSWIM2 WILD-TYPE" 
      TCGA-49-4488       TCGA-49-4490       TCGA-49-4494       TCGA-49-4501 
"ZSWIM2 WILD-TYPE" "ZSWIM2 WILD-TYPE" "ZSWIM2 WILD-TYPE"   "ZSWIM2 MUTATED" 
      TCGA-49-4505       TCGA-49-4506       TCGA-49-4507       TCGA-49-4510 
"ZSWIM2 WILD-TYPE" "ZSWIM2 WILD-TYPE" "ZSWIM2 WILD-TYPE" "ZSWIM2 WILD-TYPE" 
      TCGA-49-4512       TCGA-49-4514       TCGA-49-6742       TCGA-49-6743 
"ZSWIM2 WILD-TYPE"   "ZSWIM2 MUTATED" "ZSWIM2 WILD-TYPE" "ZSWIM2 WILD-TYPE" 
      TCGA-49-6744       TCGA-49-6745       TCGA-50-5044       TCGA-50-5045 
"ZSWIM2 WILD-TYPE" "ZSWIM2 WILD-TYPE" "ZSWIM2 WILD-TYPE" "ZSWIM2 WILD-TYPE" 
      TCGA-50-5049       TCGA-50-5051       TCGA-50-5055       TCGA-50-5066 
  "ZSWIM2 MUTATED" "ZSWIM2 WILD-TYPE" "ZSWIM2 WILD-TYPE" "ZSWIM2 WILD-TYPE" 
      TCGA-50-5068       TCGA-50-5072       TCGA-50-5930       TCGA-50-5931 
"ZSWIM2 WILD-TYPE" "ZSWIM2 WILD-TYPE" "ZSWIM2 WILD-TYPE" "ZSWIM2 WILD-TYPE" 
      TCGA-50-5932       TCGA-50-5933       TCGA-50-5935       TCGA-50-5936 
"ZSWIM2 WILD-TYPE"   "ZSWIM2 MUTATED" "ZSWIM2 WILD-TYPE" "ZSWIM2 WILD-TYPE" 
      TCGA-50-5939       TCGA-50-5941       TCGA-50-5942       TCGA-50-5944 
"ZSWIM2 WILD-TYPE" "ZSWIM2 WILD-TYPE" "ZSWIM2 WILD-TYPE" "ZSWIM2 WILD-TYPE" 
      TCGA-50-5946       TCGA-50-6590       TCGA-50-6591       TCGA-50-6592 
"ZSWIM2 WILD-TYPE" "ZSWIM2 WILD-TYPE" "ZSWIM2 WILD-TYPE" "ZSWIM2 WILD-TYPE" 
      TCGA-50-6593       TCGA-50-6594       TCGA-50-6595       TCGA-50-6597 
"ZSWIM2 WILD-TYPE" "ZSWIM2 WILD-TYPE" "ZSWIM2 WILD-TYPE" "ZSWIM2 WILD-TYPE" 
      TCGA-55-1592       TCGA-55-1594       TCGA-55-1595       TCGA-55-1596 
"ZSWIM2 WILD-TYPE" "ZSWIM2 WILD-TYPE" "ZSWIM2 WILD-TYPE" "ZSWIM2 WILD-TYPE" 
      TCGA-55-5899       TCGA-55-6543       TCGA-55-6642       TCGA-55-6712 
"ZSWIM2 WILD-TYPE" "ZSWIM2 WILD-TYPE" "ZSWIM2 WILD-TYPE" "ZSWIM2 WILD-TYPE" 
      TCGA-64-1676       TCGA-64-1677       TCGA-64-1678       TCGA-64-1680 
"ZSWIM2 WILD-TYPE" "ZSWIM2 WILD-TYPE" "ZSWIM2 WILD-TYPE" "ZSWIM2 WILD-TYPE" 
      TCGA-64-5774       TCGA-64-5775       TCGA-64-5778       TCGA-64-5779 
"ZSWIM2 WILD-TYPE" "ZSWIM2 WILD-TYPE" "ZSWIM2 WILD-TYPE" "ZSWIM2 WILD-TYPE" 
      TCGA-64-5781       TCGA-64-5815       TCGA-67-3770       TCGA-67-3771 
"ZSWIM2 WILD-TYPE" "ZSWIM2 WILD-TYPE" "ZSWIM2 WILD-TYPE" "ZSWIM2 WILD-TYPE" 
      TCGA-67-3772       TCGA-67-3773       TCGA-67-3774       TCGA-67-6215 
"ZSWIM2 WILD-TYPE" "ZSWIM2 WILD-TYPE" "ZSWIM2 WILD-TYPE" "ZSWIM2 WILD-TYPE" 
      TCGA-67-6216       TCGA-67-6217       TCGA-71-6725       TCGA-73-4658 
"ZSWIM2 WILD-TYPE" "ZSWIM2 WILD-TYPE" "ZSWIM2 WILD-TYPE"   "ZSWIM2 MUTATED" 
      TCGA-73-4659       TCGA-73-4662       TCGA-73-4666       TCGA-73-4668 
"ZSWIM2 WILD-TYPE" "ZSWIM2 WILD-TYPE" "ZSWIM2 WILD-TYPE" "ZSWIM2 WILD-TYPE" 
      TCGA-73-4670       TCGA-73-4675       TCGA-73-4676       TCGA-73-4677 
"ZSWIM2 WILD-TYPE" "ZSWIM2 WILD-TYPE" "ZSWIM2 WILD-TYPE" "ZSWIM2 WILD-TYPE" 
      TCGA-91-6828       TCGA-91-6829       TCGA-91-6831       TCGA-91-6835 
"ZSWIM2 WILD-TYPE" "ZSWIM2 WILD-TYPE" "ZSWIM2 WILD-TYPE" "ZSWIM2 WILD-TYPE" 
      TCGA-91-6836 
"ZSWIM2 WILD-TYPE" 
[1] "hr=" "2.2"
D70V2, continuous
D70V3, binary
[1] "tbl2"
                  cls
clus               [,1] [,2]
  ZSWIM2 MUTATED      9    4
  ZSWIM2 WILD-TYPE   84   75
        clus
vv       ZSWIM2 MUTATED ZSWIM2 WILD-TYPE
  FEMALE              9               84
  MALE                4               75
D70V4, continuous
D70V5, multiclass
D70V6, multiclass
    clus
vv   ZSWIM2 MUTATED ZSWIM2 WILD-TYPE
  T1              3               38
  T2              7              101
  T3              1               13
  T4              2                6
D70V7, multiclass
       clus
vv      ZSWIM2 MUTATED ZSWIM2 WILD-TYPE
  N0                 9               86
  N1                 2               35
  N2+N3              1               34
D70V8, multiclass
    clus
vv   ZSWIM2 MUTATED ZSWIM2 WILD-TYPE
  M0             11              126
  M1              0                9
  MX              2               20
D70V9, multiclass
     clus
vv    ZSWIM2 MUTATED ZSWIM2 WILD-TYPE
  I                8               80
  II               3               30
  III              2               37
  IV               0                9
D70V10, binary
[1] "tbl2"
                  cls
clus               [,1] [,2]
  ZSWIM2 MUTATED      3   10
  ZSWIM2 WILD-TYPE   13  146
     clus
vv    ZSWIM2 MUTATED ZSWIM2 WILD-TYPE
  NO               3               13
  YES             10              146
D70V11, continuous
D70V12, continuous
D70V13, multiclass
                                             clus
vv                                            ZSWIM2 MUTATED ZSWIM2 WILD-TYPE
  CURRENT REFORMED SMOKER FOR < OR = 15 YEARS              4               58
  CURRENT REFORMED SMOKER FOR > 15 YEARS                   4               42
  CURRENT SMOKER                                           2               26
  LIFELONG NON-SMOKER                                      1               23
D70V14, continuous

Clustering(71) Variable = OR2M7 MUTATION ANALYSIS
D71V1, survival
                 sevent
clus2              0  1
  OR2M7 MUTATED    4  5
  OR2M7 WILD-TYPE 95 45
  OR2M7 MUTATED OR2M7 WILD-TYPE 
              9             140 
  OR2M7 MUTATED OR2M7 WILD-TYPE 
              5              45 
$`OR2M7 MUTATED`
TCGA-05-4396 TCGA-44-2656 TCGA-44-6145 TCGA-44-6774 TCGA-49-4486 TCGA-50-5072 
        9.96        19.10         3.35         5.42        76.21         8.05 
TCGA-50-6593 TCGA-50-6595 TCGA-73-4658 
       11.05         6.21        52.57 

$`OR2M7 WILD-TYPE`
TCGA-05-4249 TCGA-05-4250 TCGA-05-4382 TCGA-05-4384 TCGA-05-4390 TCGA-05-4397 
       38.07         3.98        19.92        14.01        37.02        24.03 
TCGA-05-4398 TCGA-05-4402 TCGA-05-4405 TCGA-05-4415 TCGA-05-4417 TCGA-05-4418 
       47.05         8.02        20.05         2.96        14.93         8.98 
TCGA-05-4420 TCGA-05-4424 TCGA-05-4426 TCGA-05-4427 TCGA-05-4430 TCGA-05-4432 
       29.95        30.02        26.01        26.01        25.02        25.02 
TCGA-05-4433 TCGA-05-4434 TCGA-05-5420 TCGA-05-5423 TCGA-05-5425 TCGA-05-5429 
       24.00        15.02         1.02         4.96         2.96         0.99 
TCGA-05-5715 TCGA-35-3615 TCGA-35-4122 TCGA-35-4123 TCGA-35-5375 TCGA-38-4625 
        2.04         0.46         7.36         5.95         8.68        47.61 
TCGA-38-4626 TCGA-38-4627 TCGA-38-4628 TCGA-38-4629 TCGA-38-4630 TCGA-38-4631 
       85.32        37.71        49.02        28.37        35.28        11.64 
TCGA-38-4632 TCGA-38-6178 TCGA-44-2655 TCGA-44-2657 TCGA-44-2659 TCGA-44-2661 
       44.61         5.19        18.87        13.15        17.39         3.39 
TCGA-44-2662 TCGA-44-2665 TCGA-44-2666 TCGA-44-2668 TCGA-44-3396 TCGA-44-3398 
       15.78        13.15         3.19         8.09        10.22         8.32 
TCGA-44-3918 TCGA-44-3919 TCGA-44-4112 TCGA-44-5643 TCGA-44-5645 TCGA-44-6144 
        6.44         6.21         4.60         3.48         6.84         0.30 
TCGA-44-6146 TCGA-44-6147 TCGA-44-6148 TCGA-44-6775 TCGA-44-6776 TCGA-44-6777 
        9.93         7.76         3.12         2.70        63.72        32.45 
TCGA-44-6778 TCGA-44-6779 TCGA-49-4487 TCGA-49-4488 TCGA-49-4490 TCGA-49-4494 
       36.49        16.41        28.11        28.57        12.66        35.54 
TCGA-49-4501 TCGA-49-4505 TCGA-49-4506 TCGA-49-4507 TCGA-49-4510 TCGA-49-4512 
       46.72        14.07        32.84         8.81        29.46        29.75 
TCGA-49-4514 TCGA-49-6742 TCGA-49-6743 TCGA-49-6744 TCGA-49-6745 TCGA-50-5044 
       43.20        15.02        12.13        12.99         4.93        20.48 
TCGA-50-5045 TCGA-50-5049 TCGA-50-5051 TCGA-50-5055 TCGA-50-5066 TCGA-50-5068 
       71.47        48.82        14.96        25.81         9.76        49.28 
TCGA-50-5930 TCGA-50-5931 TCGA-50-5932 TCGA-50-5933 TCGA-50-5935 TCGA-50-5936 
        9.27         8.78        35.87        77.88        21.47         8.45 
TCGA-50-5939 TCGA-50-5941 TCGA-50-5942 TCGA-50-5944 TCGA-50-5946 TCGA-50-6590 
       15.12         9.37         4.44        12.26        11.47        42.31 
TCGA-50-6591 TCGA-50-6592 TCGA-50-6594 TCGA-50-6597 TCGA-55-1592 TCGA-55-1594 
        3.88        25.51        12.16        33.37        23.05        38.73 
TCGA-55-1595 TCGA-55-1596 TCGA-55-5899 TCGA-55-6543 TCGA-55-6642 TCGA-55-6712 
       48.62        45.17         2.86         0.07        32.61         0.79 
TCGA-64-1676 TCGA-64-1677 TCGA-64-1678 TCGA-64-1680 TCGA-64-5774 TCGA-64-5775 
       56.81        20.65        39.09        37.02        83.84         0.10 
TCGA-64-5778 TCGA-64-5779 TCGA-64-5781 TCGA-64-5815 TCGA-67-3770 TCGA-67-3771 
       30.44        16.67        39.52         7.33         0.99         1.97 
TCGA-67-3772 TCGA-67-3773 TCGA-67-3774 TCGA-67-6215 TCGA-67-6216 TCGA-67-6217 
        0.59         2.04         0.59         0.89         0.69        13.87 
TCGA-71-6725 TCGA-73-4659 TCGA-73-4662 TCGA-73-4666 TCGA-73-4668 TCGA-73-4670 
        2.01        23.38        29.95        20.28        15.35         0.46 
TCGA-73-4675 TCGA-73-4676 TCGA-73-4677 TCGA-91-6828 TCGA-91-6829 TCGA-91-6831 
        1.32         4.01         1.25         1.22        41.33         1.28 
TCGA-91-6835 TCGA-91-6836 
        1.15         0.36 

  OR2M7 MUTATED OR2M7 WILD-TYPE 
           3.35            0.07 
  OR2M7 MUTATED OR2M7 WILD-TYPE 
          76.21           85.32 
  OR2M7 MUTATED OR2M7 WILD-TYPE 
           9.96           14.04 
[1] "3.4 - 76.2 (10.0)" "0.1 - 85.3 (14.0)"
     TCGA-05-4249      TCGA-05-4250      TCGA-05-4382      TCGA-05-4384 
"OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" 
     TCGA-05-4390      TCGA-05-4396      TCGA-05-4397      TCGA-05-4398 
"OR2M7 WILD-TYPE"   "OR2M7 MUTATED" "OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" 
     TCGA-05-4402      TCGA-05-4405      TCGA-05-4415      TCGA-05-4417 
"OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" 
     TCGA-05-4418      TCGA-05-4420      TCGA-05-4424      TCGA-05-4426 
"OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" 
     TCGA-05-4427      TCGA-05-4430      TCGA-05-4432      TCGA-05-4433 
"OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" 
     TCGA-05-4434      TCGA-05-5420      TCGA-05-5423      TCGA-05-5425 
"OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" 
     TCGA-05-5429      TCGA-05-5715      TCGA-35-3615      TCGA-35-4122 
"OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" 
     TCGA-35-4123      TCGA-35-5375      TCGA-38-4625      TCGA-38-4626 
"OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" 
     TCGA-38-4627      TCGA-38-4628      TCGA-38-4629      TCGA-38-4630 
"OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" 
     TCGA-38-4631      TCGA-38-4632      TCGA-38-6178      TCGA-44-2655 
"OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" 
     TCGA-44-2656      TCGA-44-2657      TCGA-44-2659      TCGA-44-2661 
  "OR2M7 MUTATED" "OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" 
     TCGA-44-2662      TCGA-44-2665      TCGA-44-2666      TCGA-44-2668 
"OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" 
     TCGA-44-3396      TCGA-44-3398      TCGA-44-3918      TCGA-44-3919 
"OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" 
     TCGA-44-4112      TCGA-44-5643      TCGA-44-5645      TCGA-44-6144 
"OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" 
     TCGA-44-6145      TCGA-44-6146      TCGA-44-6147      TCGA-44-6148 
  "OR2M7 MUTATED" "OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" 
     TCGA-44-6774      TCGA-44-6775      TCGA-44-6776      TCGA-44-6777 
  "OR2M7 MUTATED" "OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" 
     TCGA-44-6778      TCGA-44-6779      TCGA-49-4486      TCGA-49-4487 
"OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE"   "OR2M7 MUTATED" "OR2M7 WILD-TYPE" 
     TCGA-49-4488      TCGA-49-4490      TCGA-49-4494      TCGA-49-4501 
"OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" 
     TCGA-49-4505      TCGA-49-4506      TCGA-49-4507      TCGA-49-4510 
"OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" 
     TCGA-49-4512      TCGA-49-4514      TCGA-49-6742      TCGA-49-6743 
"OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" 
     TCGA-49-6744      TCGA-49-6745      TCGA-50-5044      TCGA-50-5045 
"OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" 
     TCGA-50-5049      TCGA-50-5051      TCGA-50-5055      TCGA-50-5066 
"OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" 
     TCGA-50-5068      TCGA-50-5072      TCGA-50-5930      TCGA-50-5931 
"OR2M7 WILD-TYPE"   "OR2M7 MUTATED" "OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" 
     TCGA-50-5932      TCGA-50-5933      TCGA-50-5935      TCGA-50-5936 
"OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" 
     TCGA-50-5939      TCGA-50-5941      TCGA-50-5942      TCGA-50-5944 
"OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" 
     TCGA-50-5946      TCGA-50-6590      TCGA-50-6591      TCGA-50-6592 
"OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" 
     TCGA-50-6593      TCGA-50-6594      TCGA-50-6595      TCGA-50-6597 
  "OR2M7 MUTATED" "OR2M7 WILD-TYPE"   "OR2M7 MUTATED" "OR2M7 WILD-TYPE" 
     TCGA-55-1592      TCGA-55-1594      TCGA-55-1595      TCGA-55-1596 
"OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" 
     TCGA-55-5899      TCGA-55-6543      TCGA-55-6642      TCGA-55-6712 
"OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" 
     TCGA-64-1676      TCGA-64-1677      TCGA-64-1678      TCGA-64-1680 
"OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" 
     TCGA-64-5774      TCGA-64-5775      TCGA-64-5778      TCGA-64-5779 
"OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" 
     TCGA-64-5781      TCGA-64-5815      TCGA-67-3770      TCGA-67-3771 
"OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" 
     TCGA-67-3772      TCGA-67-3773      TCGA-67-3774      TCGA-67-6215 
"OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" 
     TCGA-67-6216      TCGA-67-6217      TCGA-71-6725      TCGA-73-4658 
"OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE"   "OR2M7 MUTATED" 
     TCGA-73-4659      TCGA-73-4662      TCGA-73-4666      TCGA-73-4668 
"OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" 
     TCGA-73-4670      TCGA-73-4675      TCGA-73-4676      TCGA-73-4677 
"OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" 
     TCGA-91-6828      TCGA-91-6829      TCGA-91-6831      TCGA-91-6835 
"OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" 
     TCGA-91-6836 
"OR2M7 WILD-TYPE" 
     TCGA-05-4249      TCGA-05-4250      TCGA-05-4382      TCGA-05-4384 
"OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" 
     TCGA-05-4390      TCGA-05-4396      TCGA-05-4397      TCGA-05-4398 
"OR2M7 WILD-TYPE"   "OR2M7 MUTATED" "OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" 
     TCGA-05-4402      TCGA-05-4405      TCGA-05-4415      TCGA-05-4417 
"OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" 
     TCGA-05-4418      TCGA-05-4420      TCGA-05-4424      TCGA-05-4426 
"OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" 
     TCGA-05-4427      TCGA-05-4430      TCGA-05-4432      TCGA-05-4433 
"OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" 
     TCGA-05-4434      TCGA-05-5420      TCGA-05-5423      TCGA-05-5425 
"OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" 
     TCGA-05-5429      TCGA-05-5715      TCGA-35-3615      TCGA-35-4122 
"OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" 
     TCGA-35-4123      TCGA-35-5375      TCGA-38-4625      TCGA-38-4626 
"OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" 
     TCGA-38-4627      TCGA-38-4628      TCGA-38-4629      TCGA-38-4630 
"OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" 
     TCGA-38-4631      TCGA-38-4632      TCGA-38-6178      TCGA-44-2655 
"OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" 
     TCGA-44-2656      TCGA-44-2657      TCGA-44-2659      TCGA-44-2661 
  "OR2M7 MUTATED" "OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" 
     TCGA-44-2662      TCGA-44-2665      TCGA-44-2666      TCGA-44-2668 
"OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" 
     TCGA-44-3396      TCGA-44-3398      TCGA-44-3918      TCGA-44-3919 
"OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" 
     TCGA-44-4112      TCGA-44-5643      TCGA-44-5645      TCGA-44-6144 
"OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" 
     TCGA-44-6145      TCGA-44-6146      TCGA-44-6147      TCGA-44-6148 
  "OR2M7 MUTATED" "OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" 
     TCGA-44-6774      TCGA-44-6775      TCGA-44-6776      TCGA-44-6777 
  "OR2M7 MUTATED" "OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" 
     TCGA-44-6778      TCGA-44-6779      TCGA-49-4486      TCGA-49-4487 
"OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE"   "OR2M7 MUTATED" "OR2M7 WILD-TYPE" 
     TCGA-49-4488      TCGA-49-4490      TCGA-49-4494      TCGA-49-4501 
"OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" 
     TCGA-49-4505      TCGA-49-4506      TCGA-49-4507      TCGA-49-4510 
"OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" 
     TCGA-49-4512      TCGA-49-4514      TCGA-49-6742      TCGA-49-6743 
"OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" 
     TCGA-49-6744      TCGA-49-6745      TCGA-50-5044      TCGA-50-5045 
"OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" 
     TCGA-50-5049      TCGA-50-5051      TCGA-50-5055      TCGA-50-5066 
"OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" 
     TCGA-50-5068      TCGA-50-5072      TCGA-50-5930      TCGA-50-5931 
"OR2M7 WILD-TYPE"   "OR2M7 MUTATED" "OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" 
     TCGA-50-5932      TCGA-50-5933      TCGA-50-5935      TCGA-50-5936 
"OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" 
     TCGA-50-5939      TCGA-50-5941      TCGA-50-5942      TCGA-50-5944 
"OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" 
     TCGA-50-5946      TCGA-50-6590      TCGA-50-6591      TCGA-50-6592 
"OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" 
     TCGA-50-6593      TCGA-50-6594      TCGA-50-6595      TCGA-50-6597 
  "OR2M7 MUTATED" "OR2M7 WILD-TYPE"   "OR2M7 MUTATED" "OR2M7 WILD-TYPE" 
     TCGA-55-1592      TCGA-55-1594      TCGA-55-1595      TCGA-55-1596 
"OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" 
     TCGA-55-5899      TCGA-55-6543      TCGA-55-6642      TCGA-55-6712 
"OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" 
     TCGA-64-1676      TCGA-64-1677      TCGA-64-1678      TCGA-64-1680 
"OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" 
     TCGA-64-5774      TCGA-64-5775      TCGA-64-5778      TCGA-64-5779 
"OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" 
     TCGA-64-5781      TCGA-64-5815      TCGA-67-3770      TCGA-67-3771 
"OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" 
     TCGA-67-3772      TCGA-67-3773      TCGA-67-3774      TCGA-67-6215 
"OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" 
     TCGA-67-6216      TCGA-67-6217      TCGA-71-6725      TCGA-73-4658 
"OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE"   "OR2M7 MUTATED" 
     TCGA-73-4659      TCGA-73-4662      TCGA-73-4666      TCGA-73-4668 
"OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" 
     TCGA-73-4670      TCGA-73-4675      TCGA-73-4676      TCGA-73-4677 
"OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" 
     TCGA-91-6828      TCGA-91-6829      TCGA-91-6831      TCGA-91-6835 
"OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" 
     TCGA-91-6836 
"OR2M7 WILD-TYPE" 
     TCGA-05-4249      TCGA-05-4250      TCGA-05-4382      TCGA-05-4384 
"OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" 
     TCGA-05-4390      TCGA-05-4396      TCGA-05-4397      TCGA-05-4398 
"OR2M7 WILD-TYPE"   "OR2M7 MUTATED" "OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" 
     TCGA-05-4402      TCGA-05-4405      TCGA-05-4415      TCGA-05-4417 
"OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" 
     TCGA-05-4418      TCGA-05-4420      TCGA-05-4424      TCGA-05-4426 
"OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" 
     TCGA-05-4427      TCGA-05-4430      TCGA-05-4432      TCGA-05-4433 
"OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" 
     TCGA-05-4434      TCGA-05-5420      TCGA-05-5423      TCGA-05-5425 
"OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" 
     TCGA-05-5429      TCGA-05-5715      TCGA-35-3615      TCGA-35-4122 
"OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" 
     TCGA-35-4123      TCGA-35-5375      TCGA-38-4625      TCGA-38-4626 
"OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" 
     TCGA-38-4627      TCGA-38-4628      TCGA-38-4629      TCGA-38-4630 
"OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" 
     TCGA-38-4631      TCGA-38-4632      TCGA-38-6178      TCGA-44-2655 
"OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" 
     TCGA-44-2656      TCGA-44-2657      TCGA-44-2659      TCGA-44-2661 
  "OR2M7 MUTATED" "OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" 
     TCGA-44-2662      TCGA-44-2665      TCGA-44-2666      TCGA-44-2668 
"OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" 
     TCGA-44-3396      TCGA-44-3398      TCGA-44-3918      TCGA-44-3919 
"OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" 
     TCGA-44-4112      TCGA-44-5643      TCGA-44-5645      TCGA-44-6144 
"OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" 
     TCGA-44-6145      TCGA-44-6146      TCGA-44-6147      TCGA-44-6148 
  "OR2M7 MUTATED" "OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" 
     TCGA-44-6774      TCGA-44-6775      TCGA-44-6776      TCGA-44-6777 
  "OR2M7 MUTATED" "OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" 
     TCGA-44-6778      TCGA-44-6779      TCGA-49-4486      TCGA-49-4487 
"OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE"   "OR2M7 MUTATED" "OR2M7 WILD-TYPE" 
     TCGA-49-4488      TCGA-49-4490      TCGA-49-4494      TCGA-49-4501 
"OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" 
     TCGA-49-4505      TCGA-49-4506      TCGA-49-4507      TCGA-49-4510 
"OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" 
     TCGA-49-4512      TCGA-49-4514      TCGA-49-6742      TCGA-49-6743 
"OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" 
     TCGA-49-6744      TCGA-49-6745      TCGA-50-5044      TCGA-50-5045 
"OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" 
     TCGA-50-5049      TCGA-50-5051      TCGA-50-5055      TCGA-50-5066 
"OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" 
     TCGA-50-5068      TCGA-50-5072      TCGA-50-5930      TCGA-50-5931 
"OR2M7 WILD-TYPE"   "OR2M7 MUTATED" "OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" 
     TCGA-50-5932      TCGA-50-5933      TCGA-50-5935      TCGA-50-5936 
"OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" 
     TCGA-50-5939      TCGA-50-5941      TCGA-50-5942      TCGA-50-5944 
"OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" 
     TCGA-50-5946      TCGA-50-6590      TCGA-50-6591      TCGA-50-6592 
"OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" 
     TCGA-50-6593      TCGA-50-6594      TCGA-50-6595      TCGA-50-6597 
  "OR2M7 MUTATED" "OR2M7 WILD-TYPE"   "OR2M7 MUTATED" "OR2M7 WILD-TYPE" 
     TCGA-55-1592      TCGA-55-1594      TCGA-55-1595      TCGA-55-1596 
"OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" 
     TCGA-55-5899      TCGA-55-6543      TCGA-55-6642      TCGA-55-6712 
"OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" 
     TCGA-64-1676      TCGA-64-1677      TCGA-64-1678      TCGA-64-1680 
"OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" 
     TCGA-64-5774      TCGA-64-5775      TCGA-64-5778      TCGA-64-5779 
"OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" 
     TCGA-64-5781      TCGA-64-5815      TCGA-67-3770      TCGA-67-3771 
"OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" 
     TCGA-67-3772      TCGA-67-3773      TCGA-67-3774      TCGA-67-6215 
"OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" 
     TCGA-67-6216      TCGA-67-6217      TCGA-71-6725      TCGA-73-4658 
"OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE"   "OR2M7 MUTATED" 
     TCGA-73-4659      TCGA-73-4662      TCGA-73-4666      TCGA-73-4668 
"OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" 
     TCGA-73-4670      TCGA-73-4675      TCGA-73-4676      TCGA-73-4677 
"OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" 
     TCGA-91-6828      TCGA-91-6829      TCGA-91-6831      TCGA-91-6835 
"OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" 
     TCGA-91-6836 
"OR2M7 WILD-TYPE" 
[1] "hr=" "1.4"
D71V2, continuous
D71V3, binary
[1] "tbl2"
                 cls
clus              [,1] [,2]
  OR2M7 MUTATED      5    4
  OR2M7 WILD-TYPE   88   75
        clus
vv       OR2M7 MUTATED OR2M7 WILD-TYPE
  FEMALE             5              88
  MALE               4              75
D71V4, continuous
D71V5, multiclass
D71V6, multiclass
    clus
vv   OR2M7 MUTATED OR2M7 WILD-TYPE
  T1             4              37
  T2             4             104
  T3             0              14
  T4             1               7
D71V7, multiclass
       clus
vv      OR2M7 MUTATED OR2M7 WILD-TYPE
  N0                4              91
  N1                1              36
  N2+N3             4              31
D71V8, multiclass
    clus
vv   OR2M7 MUTATED OR2M7 WILD-TYPE
  M0             9             128
  M1             0               9
  MX             0              22
D71V9, multiclass
     clus
vv    OR2M7 MUTATED OR2M7 WILD-TYPE
  I               4              84
  II              0              33
  III             5              34
  IV              0               9
D71V10, binary
[1] "tbl2"
                 cls
clus              [,1] [,2]
  OR2M7 MUTATED      1    8
  OR2M7 WILD-TYPE   15  148
     clus
vv    OR2M7 MUTATED OR2M7 WILD-TYPE
  NO              1              15
  YES             8             148
D71V11, continuous
D71V12, continuous
D71V13, multiclass
                                             clus
vv                                            OR2M7 MUTATED OR2M7 WILD-TYPE
  CURRENT REFORMED SMOKER FOR < OR = 15 YEARS             3              59
  CURRENT REFORMED SMOKER FOR > 15 YEARS                  5              41
  CURRENT SMOKER                                          1              27
  LIFELONG NON-SMOKER                                     0              24
D71V14, continuous

Clustering(72) Variable = C7 MUTATION ANALYSIS
D72V1, survival
              sevent
clus2           0  1
  C7 MUTATED    6  6
  C7 WILD-TYPE 93 44
  C7 MUTATED C7 WILD-TYPE 
          12          137 
  C7 MUTATED C7 WILD-TYPE 
           6           44 
$`C7 MUTATED`
TCGA-05-4382 TCGA-05-4396 TCGA-05-4397 TCGA-38-4631 TCGA-38-4632 TCGA-44-2656 
       19.92         9.96        24.03        11.64        44.61        19.10 
TCGA-44-3398 TCGA-44-6144 TCGA-49-4510 TCGA-50-6592 TCGA-55-6642 TCGA-91-6831 
        8.32         0.30        29.46        25.51        32.61         1.28 

$`C7 WILD-TYPE`
TCGA-05-4249 TCGA-05-4250 TCGA-05-4384 TCGA-05-4390 TCGA-05-4398 TCGA-05-4402 
       38.07         3.98        14.01        37.02        47.05         8.02 
TCGA-05-4405 TCGA-05-4415 TCGA-05-4417 TCGA-05-4418 TCGA-05-4420 TCGA-05-4424 
       20.05         2.96        14.93         8.98        29.95        30.02 
TCGA-05-4426 TCGA-05-4427 TCGA-05-4430 TCGA-05-4432 TCGA-05-4433 TCGA-05-4434 
       26.01        26.01        25.02        25.02        24.00        15.02 
TCGA-05-5420 TCGA-05-5423 TCGA-05-5425 TCGA-05-5429 TCGA-05-5715 TCGA-35-3615 
        1.02         4.96         2.96         0.99         2.04         0.46 
TCGA-35-4122 TCGA-35-4123 TCGA-35-5375 TCGA-38-4625 TCGA-38-4626 TCGA-38-4627 
        7.36         5.95         8.68        47.61        85.32        37.71 
TCGA-38-4628 TCGA-38-4629 TCGA-38-4630 TCGA-38-6178 TCGA-44-2655 TCGA-44-2657 
       49.02        28.37        35.28         5.19        18.87        13.15 
TCGA-44-2659 TCGA-44-2661 TCGA-44-2662 TCGA-44-2665 TCGA-44-2666 TCGA-44-2668 
       17.39         3.39        15.78        13.15         3.19         8.09 
TCGA-44-3396 TCGA-44-3918 TCGA-44-3919 TCGA-44-4112 TCGA-44-5643 TCGA-44-5645 
       10.22         6.44         6.21         4.60         3.48         6.84 
TCGA-44-6145 TCGA-44-6146 TCGA-44-6147 TCGA-44-6148 TCGA-44-6774 TCGA-44-6775 
        3.35         9.93         7.76         3.12         5.42         2.70 
TCGA-44-6776 TCGA-44-6777 TCGA-44-6778 TCGA-44-6779 TCGA-49-4486 TCGA-49-4487 
       63.72        32.45        36.49        16.41        76.21        28.11 
TCGA-49-4488 TCGA-49-4490 TCGA-49-4494 TCGA-49-4501 TCGA-49-4505 TCGA-49-4506 
       28.57        12.66        35.54        46.72        14.07        32.84 
TCGA-49-4507 TCGA-49-4512 TCGA-49-4514 TCGA-49-6742 TCGA-49-6743 TCGA-49-6744 
        8.81        29.75        43.20        15.02        12.13        12.99 
TCGA-49-6745 TCGA-50-5044 TCGA-50-5045 TCGA-50-5049 TCGA-50-5051 TCGA-50-5055 
        4.93        20.48        71.47        48.82        14.96        25.81 
TCGA-50-5066 TCGA-50-5068 TCGA-50-5072 TCGA-50-5930 TCGA-50-5931 TCGA-50-5932 
        9.76        49.28         8.05         9.27         8.78        35.87 
TCGA-50-5933 TCGA-50-5935 TCGA-50-5936 TCGA-50-5939 TCGA-50-5941 TCGA-50-5942 
       77.88        21.47         8.45        15.12         9.37         4.44 
TCGA-50-5944 TCGA-50-5946 TCGA-50-6590 TCGA-50-6591 TCGA-50-6593 TCGA-50-6594 
       12.26        11.47        42.31         3.88        11.05        12.16 
TCGA-50-6595 TCGA-50-6597 TCGA-55-1592 TCGA-55-1594 TCGA-55-1595 TCGA-55-1596 
        6.21        33.37        23.05        38.73        48.62        45.17 
TCGA-55-5899 TCGA-55-6543 TCGA-55-6712 TCGA-64-1676 TCGA-64-1677 TCGA-64-1678 
        2.86         0.07         0.79        56.81        20.65        39.09 
TCGA-64-1680 TCGA-64-5774 TCGA-64-5775 TCGA-64-5778 TCGA-64-5779 TCGA-64-5781 
       37.02        83.84         0.10        30.44        16.67        39.52 
TCGA-64-5815 TCGA-67-3770 TCGA-67-3771 TCGA-67-3772 TCGA-67-3773 TCGA-67-3774 
        7.33         0.99         1.97         0.59         2.04         0.59 
TCGA-67-6215 TCGA-67-6216 TCGA-67-6217 TCGA-71-6725 TCGA-73-4658 TCGA-73-4659 
        0.89         0.69        13.87         2.01        52.57        23.38 
TCGA-73-4662 TCGA-73-4666 TCGA-73-4668 TCGA-73-4670 TCGA-73-4675 TCGA-73-4676 
       29.95        20.28        15.35         0.46         1.32         4.01 
TCGA-73-4677 TCGA-91-6828 TCGA-91-6829 TCGA-91-6835 TCGA-91-6836 
        1.25         1.22        41.33         1.15         0.36 

  C7 MUTATED C7 WILD-TYPE 
        0.30         0.07 
  C7 MUTATED C7 WILD-TYPE 
       44.61        85.32 
  C7 MUTATED C7 WILD-TYPE 
       19.51        13.15 
[1] "0.3 - 44.6 (19.5)" "0.1 - 85.3 (13.2)"
  TCGA-05-4249   TCGA-05-4250   TCGA-05-4382   TCGA-05-4384   TCGA-05-4390 
"C7 WILD-TYPE" "C7 WILD-TYPE"   "C7 MUTATED" "C7 WILD-TYPE" "C7 WILD-TYPE" 
  TCGA-05-4396   TCGA-05-4397   TCGA-05-4398   TCGA-05-4402   TCGA-05-4405 
  "C7 MUTATED"   "C7 MUTATED" "C7 WILD-TYPE" "C7 WILD-TYPE" "C7 WILD-TYPE" 
  TCGA-05-4415   TCGA-05-4417   TCGA-05-4418   TCGA-05-4420   TCGA-05-4424 
"C7 WILD-TYPE" "C7 WILD-TYPE" "C7 WILD-TYPE" "C7 WILD-TYPE" "C7 WILD-TYPE" 
  TCGA-05-4426   TCGA-05-4427   TCGA-05-4430   TCGA-05-4432   TCGA-05-4433 
"C7 WILD-TYPE" "C7 WILD-TYPE" "C7 WILD-TYPE" "C7 WILD-TYPE" "C7 WILD-TYPE" 
  TCGA-05-4434   TCGA-05-5420   TCGA-05-5423   TCGA-05-5425   TCGA-05-5429 
"C7 WILD-TYPE" "C7 WILD-TYPE" "C7 WILD-TYPE" "C7 WILD-TYPE" "C7 WILD-TYPE" 
  TCGA-05-5715   TCGA-35-3615   TCGA-35-4122   TCGA-35-4123   TCGA-35-5375 
"C7 WILD-TYPE" "C7 WILD-TYPE" "C7 WILD-TYPE" "C7 WILD-TYPE" "C7 WILD-TYPE" 
  TCGA-38-4625   TCGA-38-4626   TCGA-38-4627   TCGA-38-4628   TCGA-38-4629 
"C7 WILD-TYPE" "C7 WILD-TYPE" "C7 WILD-TYPE" "C7 WILD-TYPE" "C7 WILD-TYPE" 
  TCGA-38-4630   TCGA-38-4631   TCGA-38-4632   TCGA-38-6178   TCGA-44-2655 
"C7 WILD-TYPE"   "C7 MUTATED"   "C7 MUTATED" "C7 WILD-TYPE" "C7 WILD-TYPE" 
  TCGA-44-2656   TCGA-44-2657   TCGA-44-2659   TCGA-44-2661   TCGA-44-2662 
  "C7 MUTATED" "C7 WILD-TYPE" "C7 WILD-TYPE" "C7 WILD-TYPE" "C7 WILD-TYPE" 
  TCGA-44-2665   TCGA-44-2666   TCGA-44-2668   TCGA-44-3396   TCGA-44-3398 
"C7 WILD-TYPE" "C7 WILD-TYPE" "C7 WILD-TYPE" "C7 WILD-TYPE"   "C7 MUTATED" 
  TCGA-44-3918   TCGA-44-3919   TCGA-44-4112   TCGA-44-5643   TCGA-44-5645 
"C7 WILD-TYPE" "C7 WILD-TYPE" "C7 WILD-TYPE" "C7 WILD-TYPE" "C7 WILD-TYPE" 
  TCGA-44-6144   TCGA-44-6145   TCGA-44-6146   TCGA-44-6147   TCGA-44-6148 
  "C7 MUTATED" "C7 WILD-TYPE" "C7 WILD-TYPE" "C7 WILD-TYPE" "C7 WILD-TYPE" 
  TCGA-44-6774   TCGA-44-6775   TCGA-44-6776   TCGA-44-6777   TCGA-44-6778 
"C7 WILD-TYPE" "C7 WILD-TYPE" "C7 WILD-TYPE" "C7 WILD-TYPE" "C7 WILD-TYPE" 
  TCGA-44-6779   TCGA-49-4486   TCGA-49-4487   TCGA-49-4488   TCGA-49-4490 
"C7 WILD-TYPE" "C7 WILD-TYPE" "C7 WILD-TYPE" "C7 WILD-TYPE" "C7 WILD-TYPE" 
  TCGA-49-4494   TCGA-49-4501   TCGA-49-4505   TCGA-49-4506   TCGA-49-4507 
"C7 WILD-TYPE" "C7 WILD-TYPE" "C7 WILD-TYPE" "C7 WILD-TYPE" "C7 WILD-TYPE" 
  TCGA-49-4510   TCGA-49-4512   TCGA-49-4514   TCGA-49-6742   TCGA-49-6743 
  "C7 MUTATED" "C7 WILD-TYPE" "C7 WILD-TYPE" "C7 WILD-TYPE" "C7 WILD-TYPE" 
  TCGA-49-6744   TCGA-49-6745   TCGA-50-5044   TCGA-50-5045   TCGA-50-5049 
"C7 WILD-TYPE" "C7 WILD-TYPE" "C7 WILD-TYPE" "C7 WILD-TYPE" "C7 WILD-TYPE" 
  TCGA-50-5051   TCGA-50-5055   TCGA-50-5066   TCGA-50-5068   TCGA-50-5072 
"C7 WILD-TYPE" "C7 WILD-TYPE" "C7 WILD-TYPE" "C7 WILD-TYPE" "C7 WILD-TYPE" 
  TCGA-50-5930   TCGA-50-5931   TCGA-50-5932   TCGA-50-5933   TCGA-50-5935 
"C7 WILD-TYPE" "C7 WILD-TYPE" "C7 WILD-TYPE" "C7 WILD-TYPE" "C7 WILD-TYPE" 
  TCGA-50-5936   TCGA-50-5939   TCGA-50-5941   TCGA-50-5942   TCGA-50-5944 
"C7 WILD-TYPE" "C7 WILD-TYPE" "C7 WILD-TYPE" "C7 WILD-TYPE" "C7 WILD-TYPE" 
  TCGA-50-5946   TCGA-50-6590   TCGA-50-6591   TCGA-50-6592   TCGA-50-6593 
"C7 WILD-TYPE" "C7 WILD-TYPE" "C7 WILD-TYPE"   "C7 MUTATED" "C7 WILD-TYPE" 
  TCGA-50-6594   TCGA-50-6595   TCGA-50-6597   TCGA-55-1592   TCGA-55-1594 
"C7 WILD-TYPE" "C7 WILD-TYPE" "C7 WILD-TYPE" "C7 WILD-TYPE" "C7 WILD-TYPE" 
  TCGA-55-1595   TCGA-55-1596   TCGA-55-5899   TCGA-55-6543   TCGA-55-6642 
"C7 WILD-TYPE" "C7 WILD-TYPE" "C7 WILD-TYPE" "C7 WILD-TYPE"   "C7 MUTATED" 
  TCGA-55-6712   TCGA-64-1676   TCGA-64-1677   TCGA-64-1678   TCGA-64-1680 
"C7 WILD-TYPE" "C7 WILD-TYPE" "C7 WILD-TYPE" "C7 WILD-TYPE" "C7 WILD-TYPE" 
  TCGA-64-5774   TCGA-64-5775   TCGA-64-5778   TCGA-64-5779   TCGA-64-5781 
"C7 WILD-TYPE" "C7 WILD-TYPE" "C7 WILD-TYPE" "C7 WILD-TYPE" "C7 WILD-TYPE" 
  TCGA-64-5815   TCGA-67-3770   TCGA-67-3771   TCGA-67-3772   TCGA-67-3773 
"C7 WILD-TYPE" "C7 WILD-TYPE" "C7 WILD-TYPE" "C7 WILD-TYPE" "C7 WILD-TYPE" 
  TCGA-67-3774   TCGA-67-6215   TCGA-67-6216   TCGA-67-6217   TCGA-71-6725 
"C7 WILD-TYPE" "C7 WILD-TYPE" "C7 WILD-TYPE" "C7 WILD-TYPE" "C7 WILD-TYPE" 
  TCGA-73-4658   TCGA-73-4659   TCGA-73-4662   TCGA-73-4666   TCGA-73-4668 
"C7 WILD-TYPE" "C7 WILD-TYPE" "C7 WILD-TYPE" "C7 WILD-TYPE" "C7 WILD-TYPE" 
  TCGA-73-4670   TCGA-73-4675   TCGA-73-4676   TCGA-73-4677   TCGA-91-6828 
"C7 WILD-TYPE" "C7 WILD-TYPE" "C7 WILD-TYPE" "C7 WILD-TYPE" "C7 WILD-TYPE" 
  TCGA-91-6829   TCGA-91-6831   TCGA-91-6835   TCGA-91-6836 
"C7 WILD-TYPE"   "C7 MUTATED" "C7 WILD-TYPE" "C7 WILD-TYPE" 
  TCGA-05-4249   TCGA-05-4250   TCGA-05-4382   TCGA-05-4384   TCGA-05-4390 
"C7 WILD-TYPE" "C7 WILD-TYPE"   "C7 MUTATED" "C7 WILD-TYPE" "C7 WILD-TYPE" 
  TCGA-05-4396   TCGA-05-4397   TCGA-05-4398   TCGA-05-4402   TCGA-05-4405 
  "C7 MUTATED"   "C7 MUTATED" "C7 WILD-TYPE" "C7 WILD-TYPE" "C7 WILD-TYPE" 
  TCGA-05-4415   TCGA-05-4417   TCGA-05-4418   TCGA-05-4420   TCGA-05-4424 
"C7 WILD-TYPE" "C7 WILD-TYPE" "C7 WILD-TYPE" "C7 WILD-TYPE" "C7 WILD-TYPE" 
  TCGA-05-4426   TCGA-05-4427   TCGA-05-4430   TCGA-05-4432   TCGA-05-4433 
"C7 WILD-TYPE" "C7 WILD-TYPE" "C7 WILD-TYPE" "C7 WILD-TYPE" "C7 WILD-TYPE" 
  TCGA-05-4434   TCGA-05-5420   TCGA-05-5423   TCGA-05-5425   TCGA-05-5429 
"C7 WILD-TYPE" "C7 WILD-TYPE" "C7 WILD-TYPE" "C7 WILD-TYPE" "C7 WILD-TYPE" 
  TCGA-05-5715   TCGA-35-3615   TCGA-35-4122   TCGA-35-4123   TCGA-35-5375 
"C7 WILD-TYPE" "C7 WILD-TYPE" "C7 WILD-TYPE" "C7 WILD-TYPE" "C7 WILD-TYPE" 
  TCGA-38-4625   TCGA-38-4626   TCGA-38-4627   TCGA-38-4628   TCGA-38-4629 
"C7 WILD-TYPE" "C7 WILD-TYPE" "C7 WILD-TYPE" "C7 WILD-TYPE" "C7 WILD-TYPE" 
  TCGA-38-4630   TCGA-38-4631   TCGA-38-4632   TCGA-38-6178   TCGA-44-2655 
"C7 WILD-TYPE"   "C7 MUTATED"   "C7 MUTATED" "C7 WILD-TYPE" "C7 WILD-TYPE" 
  TCGA-44-2656   TCGA-44-2657   TCGA-44-2659   TCGA-44-2661   TCGA-44-2662 
  "C7 MUTATED" "C7 WILD-TYPE" "C7 WILD-TYPE" "C7 WILD-TYPE" "C7 WILD-TYPE" 
  TCGA-44-2665   TCGA-44-2666   TCGA-44-2668   TCGA-44-3396   TCGA-44-3398 
"C7 WILD-TYPE" "C7 WILD-TYPE" "C7 WILD-TYPE" "C7 WILD-TYPE"   "C7 MUTATED" 
  TCGA-44-3918   TCGA-44-3919   TCGA-44-4112   TCGA-44-5643   TCGA-44-5645 
"C7 WILD-TYPE" "C7 WILD-TYPE" "C7 WILD-TYPE" "C7 WILD-TYPE" "C7 WILD-TYPE" 
  TCGA-44-6144   TCGA-44-6145   TCGA-44-6146   TCGA-44-6147   TCGA-44-6148 
  "C7 MUTATED" "C7 WILD-TYPE" "C7 WILD-TYPE" "C7 WILD-TYPE" "C7 WILD-TYPE" 
  TCGA-44-6774   TCGA-44-6775   TCGA-44-6776   TCGA-44-6777   TCGA-44-6778 
"C7 WILD-TYPE" "C7 WILD-TYPE" "C7 WILD-TYPE" "C7 WILD-TYPE" "C7 WILD-TYPE" 
  TCGA-44-6779   TCGA-49-4486   TCGA-49-4487   TCGA-49-4488   TCGA-49-4490 
"C7 WILD-TYPE" "C7 WILD-TYPE" "C7 WILD-TYPE" "C7 WILD-TYPE" "C7 WILD-TYPE" 
  TCGA-49-4494   TCGA-49-4501   TCGA-49-4505   TCGA-49-4506   TCGA-49-4507 
"C7 WILD-TYPE" "C7 WILD-TYPE" "C7 WILD-TYPE" "C7 WILD-TYPE" "C7 WILD-TYPE" 
  TCGA-49-4510   TCGA-49-4512   TCGA-49-4514   TCGA-49-6742   TCGA-49-6743 
  "C7 MUTATED" "C7 WILD-TYPE" "C7 WILD-TYPE" "C7 WILD-TYPE" "C7 WILD-TYPE" 
  TCGA-49-6744   TCGA-49-6745   TCGA-50-5044   TCGA-50-5045   TCGA-50-5049 
"C7 WILD-TYPE" "C7 WILD-TYPE" "C7 WILD-TYPE" "C7 WILD-TYPE" "C7 WILD-TYPE" 
  TCGA-50-5051   TCGA-50-5055   TCGA-50-5066   TCGA-50-5068   TCGA-50-5072 
"C7 WILD-TYPE" "C7 WILD-TYPE" "C7 WILD-TYPE" "C7 WILD-TYPE" "C7 WILD-TYPE" 
  TCGA-50-5930   TCGA-50-5931   TCGA-50-5932   TCGA-50-5933   TCGA-50-5935 
"C7 WILD-TYPE" "C7 WILD-TYPE" "C7 WILD-TYPE" "C7 WILD-TYPE" "C7 WILD-TYPE" 
  TCGA-50-5936   TCGA-50-5939   TCGA-50-5941   TCGA-50-5942   TCGA-50-5944 
"C7 WILD-TYPE" "C7 WILD-TYPE" "C7 WILD-TYPE" "C7 WILD-TYPE" "C7 WILD-TYPE" 
  TCGA-50-5946   TCGA-50-6590   TCGA-50-6591   TCGA-50-6592   TCGA-50-6593 
"C7 WILD-TYPE" "C7 WILD-TYPE" "C7 WILD-TYPE"   "C7 MUTATED" "C7 WILD-TYPE" 
  TCGA-50-6594   TCGA-50-6595   TCGA-50-6597   TCGA-55-1592   TCGA-55-1594 
"C7 WILD-TYPE" "C7 WILD-TYPE" "C7 WILD-TYPE" "C7 WILD-TYPE" "C7 WILD-TYPE" 
  TCGA-55-1595   TCGA-55-1596   TCGA-55-5899   TCGA-55-6543   TCGA-55-6642 
"C7 WILD-TYPE" "C7 WILD-TYPE" "C7 WILD-TYPE" "C7 WILD-TYPE"   "C7 MUTATED" 
  TCGA-55-6712   TCGA-64-1676   TCGA-64-1677   TCGA-64-1678   TCGA-64-1680 
"C7 WILD-TYPE" "C7 WILD-TYPE" "C7 WILD-TYPE" "C7 WILD-TYPE" "C7 WILD-TYPE" 
  TCGA-64-5774   TCGA-64-5775   TCGA-64-5778   TCGA-64-5779   TCGA-64-5781 
"C7 WILD-TYPE" "C7 WILD-TYPE" "C7 WILD-TYPE" "C7 WILD-TYPE" "C7 WILD-TYPE" 
  TCGA-64-5815   TCGA-67-3770   TCGA-67-3771   TCGA-67-3772   TCGA-67-3773 
"C7 WILD-TYPE" "C7 WILD-TYPE" "C7 WILD-TYPE" "C7 WILD-TYPE" "C7 WILD-TYPE" 
  TCGA-67-3774   TCGA-67-6215   TCGA-67-6216   TCGA-67-6217   TCGA-71-6725 
"C7 WILD-TYPE" "C7 WILD-TYPE" "C7 WILD-TYPE" "C7 WILD-TYPE" "C7 WILD-TYPE" 
  TCGA-73-4658   TCGA-73-4659   TCGA-73-4662   TCGA-73-4666   TCGA-73-4668 
"C7 WILD-TYPE" "C7 WILD-TYPE" "C7 WILD-TYPE" "C7 WILD-TYPE" "C7 WILD-TYPE" 
  TCGA-73-4670   TCGA-73-4675   TCGA-73-4676   TCGA-73-4677   TCGA-91-6828 
"C7 WILD-TYPE" "C7 WILD-TYPE" "C7 WILD-TYPE" "C7 WILD-TYPE" "C7 WILD-TYPE" 
  TCGA-91-6829   TCGA-91-6831   TCGA-91-6835   TCGA-91-6836 
"C7 WILD-TYPE"   "C7 MUTATED" "C7 WILD-TYPE" "C7 WILD-TYPE" 
  TCGA-05-4249   TCGA-05-4250   TCGA-05-4382   TCGA-05-4384   TCGA-05-4390 
"C7 WILD-TYPE" "C7 WILD-TYPE"   "C7 MUTATED" "C7 WILD-TYPE" "C7 WILD-TYPE" 
  TCGA-05-4396   TCGA-05-4397   TCGA-05-4398   TCGA-05-4402   TCGA-05-4405 
  "C7 MUTATED"   "C7 MUTATED" "C7 WILD-TYPE" "C7 WILD-TYPE" "C7 WILD-TYPE" 
  TCGA-05-4415   TCGA-05-4417   TCGA-05-4418   TCGA-05-4420   TCGA-05-4424 
"C7 WILD-TYPE" "C7 WILD-TYPE" "C7 WILD-TYPE" "C7 WILD-TYPE" "C7 WILD-TYPE" 
  TCGA-05-4426   TCGA-05-4427   TCGA-05-4430   TCGA-05-4432   TCGA-05-4433 
"C7 WILD-TYPE" "C7 WILD-TYPE" "C7 WILD-TYPE" "C7 WILD-TYPE" "C7 WILD-TYPE" 
  TCGA-05-4434   TCGA-05-5420   TCGA-05-5423   TCGA-05-5425   TCGA-05-5429 
"C7 WILD-TYPE" "C7 WILD-TYPE" "C7 WILD-TYPE" "C7 WILD-TYPE" "C7 WILD-TYPE" 
  TCGA-05-5715   TCGA-35-3615   TCGA-35-4122   TCGA-35-4123   TCGA-35-5375 
"C7 WILD-TYPE" "C7 WILD-TYPE" "C7 WILD-TYPE" "C7 WILD-TYPE" "C7 WILD-TYPE" 
  TCGA-38-4625   TCGA-38-4626   TCGA-38-4627   TCGA-38-4628   TCGA-38-4629 
"C7 WILD-TYPE" "C7 WILD-TYPE" "C7 WILD-TYPE" "C7 WILD-TYPE" "C7 WILD-TYPE" 
  TCGA-38-4630   TCGA-38-4631   TCGA-38-4632   TCGA-38-6178   TCGA-44-2655 
"C7 WILD-TYPE"   "C7 MUTATED"   "C7 MUTATED" "C7 WILD-TYPE" "C7 WILD-TYPE" 
  TCGA-44-2656   TCGA-44-2657   TCGA-44-2659   TCGA-44-2661   TCGA-44-2662 
  "C7 MUTATED" "C7 WILD-TYPE" "C7 WILD-TYPE" "C7 WILD-TYPE" "C7 WILD-TYPE" 
  TCGA-44-2665   TCGA-44-2666   TCGA-44-2668   TCGA-44-3396   TCGA-44-3398 
"C7 WILD-TYPE" "C7 WILD-TYPE" "C7 WILD-TYPE" "C7 WILD-TYPE"   "C7 MUTATED" 
  TCGA-44-3918   TCGA-44-3919   TCGA-44-4112   TCGA-44-5643   TCGA-44-5645 
"C7 WILD-TYPE" "C7 WILD-TYPE" "C7 WILD-TYPE" "C7 WILD-TYPE" "C7 WILD-TYPE" 
  TCGA-44-6144   TCGA-44-6145   TCGA-44-6146   TCGA-44-6147   TCGA-44-6148 
  "C7 MUTATED" "C7 WILD-TYPE" "C7 WILD-TYPE" "C7 WILD-TYPE" "C7 WILD-TYPE" 
  TCGA-44-6774   TCGA-44-6775   TCGA-44-6776   TCGA-44-6777   TCGA-44-6778 
"C7 WILD-TYPE" "C7 WILD-TYPE" "C7 WILD-TYPE" "C7 WILD-TYPE" "C7 WILD-TYPE" 
  TCGA-44-6779   TCGA-49-4486   TCGA-49-4487   TCGA-49-4488   TCGA-49-4490 
"C7 WILD-TYPE" "C7 WILD-TYPE" "C7 WILD-TYPE" "C7 WILD-TYPE" "C7 WILD-TYPE" 
  TCGA-49-4494   TCGA-49-4501   TCGA-49-4505   TCGA-49-4506   TCGA-49-4507 
"C7 WILD-TYPE" "C7 WILD-TYPE" "C7 WILD-TYPE" "C7 WILD-TYPE" "C7 WILD-TYPE" 
  TCGA-49-4510   TCGA-49-4512   TCGA-49-4514   TCGA-49-6742   TCGA-49-6743 
  "C7 MUTATED" "C7 WILD-TYPE" "C7 WILD-TYPE" "C7 WILD-TYPE" "C7 WILD-TYPE" 
  TCGA-49-6744   TCGA-49-6745   TCGA-50-5044   TCGA-50-5045   TCGA-50-5049 
"C7 WILD-TYPE" "C7 WILD-TYPE" "C7 WILD-TYPE" "C7 WILD-TYPE" "C7 WILD-TYPE" 
  TCGA-50-5051   TCGA-50-5055   TCGA-50-5066   TCGA-50-5068   TCGA-50-5072 
"C7 WILD-TYPE" "C7 WILD-TYPE" "C7 WILD-TYPE" "C7 WILD-TYPE" "C7 WILD-TYPE" 
  TCGA-50-5930   TCGA-50-5931   TCGA-50-5932   TCGA-50-5933   TCGA-50-5935 
"C7 WILD-TYPE" "C7 WILD-TYPE" "C7 WILD-TYPE" "C7 WILD-TYPE" "C7 WILD-TYPE" 
  TCGA-50-5936   TCGA-50-5939   TCGA-50-5941   TCGA-50-5942   TCGA-50-5944 
"C7 WILD-TYPE" "C7 WILD-TYPE" "C7 WILD-TYPE" "C7 WILD-TYPE" "C7 WILD-TYPE" 
  TCGA-50-5946   TCGA-50-6590   TCGA-50-6591   TCGA-50-6592   TCGA-50-6593 
"C7 WILD-TYPE" "C7 WILD-TYPE" "C7 WILD-TYPE"   "C7 MUTATED" "C7 WILD-TYPE" 
  TCGA-50-6594   TCGA-50-6595   TCGA-50-6597   TCGA-55-1592   TCGA-55-1594 
"C7 WILD-TYPE" "C7 WILD-TYPE" "C7 WILD-TYPE" "C7 WILD-TYPE" "C7 WILD-TYPE" 
  TCGA-55-1595   TCGA-55-1596   TCGA-55-5899   TCGA-55-6543   TCGA-55-6642 
"C7 WILD-TYPE" "C7 WILD-TYPE" "C7 WILD-TYPE" "C7 WILD-TYPE"   "C7 MUTATED" 
  TCGA-55-6712   TCGA-64-1676   TCGA-64-1677   TCGA-64-1678   TCGA-64-1680 
"C7 WILD-TYPE" "C7 WILD-TYPE" "C7 WILD-TYPE" "C7 WILD-TYPE" "C7 WILD-TYPE" 
  TCGA-64-5774   TCGA-64-5775   TCGA-64-5778   TCGA-64-5779   TCGA-64-5781 
"C7 WILD-TYPE" "C7 WILD-TYPE" "C7 WILD-TYPE" "C7 WILD-TYPE" "C7 WILD-TYPE" 
  TCGA-64-5815   TCGA-67-3770   TCGA-67-3771   TCGA-67-3772   TCGA-67-3773 
"C7 WILD-TYPE" "C7 WILD-TYPE" "C7 WILD-TYPE" "C7 WILD-TYPE" "C7 WILD-TYPE" 
  TCGA-67-3774   TCGA-67-6215   TCGA-67-6216   TCGA-67-6217   TCGA-71-6725 
"C7 WILD-TYPE" "C7 WILD-TYPE" "C7 WILD-TYPE" "C7 WILD-TYPE" "C7 WILD-TYPE" 
  TCGA-73-4658   TCGA-73-4659   TCGA-73-4662   TCGA-73-4666   TCGA-73-4668 
"C7 WILD-TYPE" "C7 WILD-TYPE" "C7 WILD-TYPE" "C7 WILD-TYPE" "C7 WILD-TYPE" 
  TCGA-73-4670   TCGA-73-4675   TCGA-73-4676   TCGA-73-4677   TCGA-91-6828 
"C7 WILD-TYPE" "C7 WILD-TYPE" "C7 WILD-TYPE" "C7 WILD-TYPE" "C7 WILD-TYPE" 
  TCGA-91-6829   TCGA-91-6831   TCGA-91-6835   TCGA-91-6836 
"C7 WILD-TYPE"   "C7 MUTATED" "C7 WILD-TYPE" "C7 WILD-TYPE" 
[1] "hr=" "1.9"
D72V2, continuous
D72V3, binary
[1] "tbl2"
              cls
clus           [,1] [,2]
  C7 MUTATED      4   10
  C7 WILD-TYPE   89   69
        clus
vv       C7 MUTATED C7 WILD-TYPE
  FEMALE          4           89
  MALE           10           69
D72V4, continuous
[1] "Remove cluster labels:" "C7 MUTATED"            
clus
  C7 MUTATED C7 WILD-TYPE 
           1           11 
  TCGA-35-4122   TCGA-35-4123   TCGA-35-5375   TCGA-64-1677   TCGA-64-5778 
"C7 WILD-TYPE" "C7 WILD-TYPE" "C7 WILD-TYPE" "C7 WILD-TYPE" "C7 WILD-TYPE" 
  TCGA-71-6725   TCGA-73-4659   TCGA-73-4662   TCGA-73-4666   TCGA-73-4668 
"C7 WILD-TYPE" "C7 WILD-TYPE" "C7 WILD-TYPE" "C7 WILD-TYPE" "C7 WILD-TYPE" 
  TCGA-73-4676 
"C7 WILD-TYPE" 
D72V5, multiclass
D72V6, multiclass
    clus
vv   C7 MUTATED C7 WILD-TYPE
  T1          2           39
  T2         10           98
  T3          0           14
  T4          2            6
D72V7, multiclass
       clus
vv      C7 MUTATED C7 WILD-TYPE
  N0             9           86
  N1             4           33
  N2+N3          1           34
D72V8, multiclass
    clus
vv   C7 MUTATED C7 WILD-TYPE
  M0         11          126
  M1          1            8
  MX          2           20
D72V9, multiclass
     clus
vv    C7 MUTATED C7 WILD-TYPE
  I            9           79
  II           2           31
  III          2           37
  IV           1            8
D72V10, binary
[1] "tbl2"
              cls
clus           [,1] [,2]
  C7 MUTATED      0   14
  C7 WILD-TYPE   16  142
     clus
vv    C7 MUTATED C7 WILD-TYPE
  NO           0           16
  YES         14          142
D72V11, continuous
D72V12, continuous
D72V13, multiclass
                                             clus
vv                                            C7 MUTATED C7 WILD-TYPE
  CURRENT REFORMED SMOKER FOR < OR = 15 YEARS          6           56
  CURRENT REFORMED SMOKER FOR > 15 YEARS               2           44
  CURRENT SMOKER                                       5           23
  LIFELONG NON-SMOKER                                  1           23
D72V14, continuous

Clustering(73) Variable = OR8H3 MUTATION ANALYSIS
D73V1, survival
                 sevent
clus2              0  1
  OR8H3 MUTATED    4  4
  OR8H3 WILD-TYPE 95 46
  OR8H3 MUTATED OR8H3 WILD-TYPE 
              8             141 
  OR8H3 MUTATED OR8H3 WILD-TYPE 
              4              46 
$`OR8H3 MUTATED`
TCGA-05-4396 TCGA-05-4398 TCGA-05-4432 TCGA-38-4629 TCGA-44-3918 TCGA-50-5933 
        9.96        47.05        25.02        28.37         6.44        77.88 
TCGA-50-5939 TCGA-64-5781 
       15.12        39.52 

$`OR8H3 WILD-TYPE`
TCGA-05-4249 TCGA-05-4250 TCGA-05-4382 TCGA-05-4384 TCGA-05-4390 TCGA-05-4397 
       38.07         3.98        19.92        14.01        37.02        24.03 
TCGA-05-4402 TCGA-05-4405 TCGA-05-4415 TCGA-05-4417 TCGA-05-4418 TCGA-05-4420 
        8.02        20.05         2.96        14.93         8.98        29.95 
TCGA-05-4424 TCGA-05-4426 TCGA-05-4427 TCGA-05-4430 TCGA-05-4433 TCGA-05-4434 
       30.02        26.01        26.01        25.02        24.00        15.02 
TCGA-05-5420 TCGA-05-5423 TCGA-05-5425 TCGA-05-5429 TCGA-05-5715 TCGA-35-3615 
        1.02         4.96         2.96         0.99         2.04         0.46 
TCGA-35-4122 TCGA-35-4123 TCGA-35-5375 TCGA-38-4625 TCGA-38-4626 TCGA-38-4627 
        7.36         5.95         8.68        47.61        85.32        37.71 
TCGA-38-4628 TCGA-38-4630 TCGA-38-4631 TCGA-38-4632 TCGA-38-6178 TCGA-44-2655 
       49.02        35.28        11.64        44.61         5.19        18.87 
TCGA-44-2656 TCGA-44-2657 TCGA-44-2659 TCGA-44-2661 TCGA-44-2662 TCGA-44-2665 
       19.10        13.15        17.39         3.39        15.78        13.15 
TCGA-44-2666 TCGA-44-2668 TCGA-44-3396 TCGA-44-3398 TCGA-44-3919 TCGA-44-4112 
        3.19         8.09        10.22         8.32         6.21         4.60 
TCGA-44-5643 TCGA-44-5645 TCGA-44-6144 TCGA-44-6145 TCGA-44-6146 TCGA-44-6147 
        3.48         6.84         0.30         3.35         9.93         7.76 
TCGA-44-6148 TCGA-44-6774 TCGA-44-6775 TCGA-44-6776 TCGA-44-6777 TCGA-44-6778 
        3.12         5.42         2.70        63.72        32.45        36.49 
TCGA-44-6779 TCGA-49-4486 TCGA-49-4487 TCGA-49-4488 TCGA-49-4490 TCGA-49-4494 
       16.41        76.21        28.11        28.57        12.66        35.54 
TCGA-49-4501 TCGA-49-4505 TCGA-49-4506 TCGA-49-4507 TCGA-49-4510 TCGA-49-4512 
       46.72        14.07        32.84         8.81        29.46        29.75 
TCGA-49-4514 TCGA-49-6742 TCGA-49-6743 TCGA-49-6744 TCGA-49-6745 TCGA-50-5044 
       43.20        15.02        12.13        12.99         4.93        20.48 
TCGA-50-5045 TCGA-50-5049 TCGA-50-5051 TCGA-50-5055 TCGA-50-5066 TCGA-50-5068 
       71.47        48.82        14.96        25.81         9.76        49.28 
TCGA-50-5072 TCGA-50-5930 TCGA-50-5931 TCGA-50-5932 TCGA-50-5935 TCGA-50-5936 
        8.05         9.27         8.78        35.87        21.47         8.45 
TCGA-50-5941 TCGA-50-5942 TCGA-50-5944 TCGA-50-5946 TCGA-50-6590 TCGA-50-6591 
        9.37         4.44        12.26        11.47        42.31         3.88 
TCGA-50-6592 TCGA-50-6593 TCGA-50-6594 TCGA-50-6595 TCGA-50-6597 TCGA-55-1592 
       25.51        11.05        12.16         6.21        33.37        23.05 
TCGA-55-1594 TCGA-55-1595 TCGA-55-1596 TCGA-55-5899 TCGA-55-6543 TCGA-55-6642 
       38.73        48.62        45.17         2.86         0.07        32.61 
TCGA-55-6712 TCGA-64-1676 TCGA-64-1677 TCGA-64-1678 TCGA-64-1680 TCGA-64-5774 
        0.79        56.81        20.65        39.09        37.02        83.84 
TCGA-64-5775 TCGA-64-5778 TCGA-64-5779 TCGA-64-5815 TCGA-67-3770 TCGA-67-3771 
        0.10        30.44        16.67         7.33         0.99         1.97 
TCGA-67-3772 TCGA-67-3773 TCGA-67-3774 TCGA-67-6215 TCGA-67-6216 TCGA-67-6217 
        0.59         2.04         0.59         0.89         0.69        13.87 
TCGA-71-6725 TCGA-73-4658 TCGA-73-4659 TCGA-73-4662 TCGA-73-4666 TCGA-73-4668 
        2.01        52.57        23.38        29.95        20.28        15.35 
TCGA-73-4670 TCGA-73-4675 TCGA-73-4676 TCGA-73-4677 TCGA-91-6828 TCGA-91-6829 
        0.46         1.32         4.01         1.25         1.22        41.33 
TCGA-91-6831 TCGA-91-6835 TCGA-91-6836 
        1.28         1.15         0.36 

  OR8H3 MUTATED OR8H3 WILD-TYPE 
           6.44            0.07 
  OR8H3 MUTATED OR8H3 WILD-TYPE 
          77.88           85.32 
  OR8H3 MUTATED OR8H3 WILD-TYPE 
         26.695          13.150 
[1] "6.4 - 77.9 (26.7)" "0.1 - 85.3 (13.2)"
     TCGA-05-4249      TCGA-05-4250      TCGA-05-4382      TCGA-05-4384 
"OR8H3 WILD-TYPE" "OR8H3 WILD-TYPE" "OR8H3 WILD-TYPE" "OR8H3 WILD-TYPE" 
     TCGA-05-4390      TCGA-05-4396      TCGA-05-4397      TCGA-05-4398 
"OR8H3 WILD-TYPE"   "OR8H3 MUTATED" "OR8H3 WILD-TYPE"   "OR8H3 MUTATED" 
     TCGA-05-4402      TCGA-05-4405      TCGA-05-4415      TCGA-05-4417 
"OR8H3 WILD-TYPE" "OR8H3 WILD-TYPE" "OR8H3 WILD-TYPE" "OR8H3 WILD-TYPE" 
     TCGA-05-4418      TCGA-05-4420      TCGA-05-4424      TCGA-05-4426 
"OR8H3 WILD-TYPE" "OR8H3 WILD-TYPE" "OR8H3 WILD-TYPE" "OR8H3 WILD-TYPE" 
     TCGA-05-4427      TCGA-05-4430      TCGA-05-4432      TCGA-05-4433 
"OR8H3 WILD-TYPE" "OR8H3 WILD-TYPE"   "OR8H3 MUTATED" "OR8H3 WILD-TYPE" 
     TCGA-05-4434      TCGA-05-5420      TCGA-05-5423      TCGA-05-5425 
"OR8H3 WILD-TYPE" "OR8H3 WILD-TYPE" "OR8H3 WILD-TYPE" "OR8H3 WILD-TYPE" 
     TCGA-05-5429      TCGA-05-5715      TCGA-35-3615      TCGA-35-4122 
"OR8H3 WILD-TYPE" "OR8H3 WILD-TYPE" "OR8H3 WILD-TYPE" "OR8H3 WILD-TYPE" 
     TCGA-35-4123      TCGA-35-5375      TCGA-38-4625      TCGA-38-4626 
"OR8H3 WILD-TYPE" "OR8H3 WILD-TYPE" "OR8H3 WILD-TYPE" "OR8H3 WILD-TYPE" 
     TCGA-38-4627      TCGA-38-4628      TCGA-38-4629      TCGA-38-4630 
"OR8H3 WILD-TYPE" "OR8H3 WILD-TYPE"   "OR8H3 MUTATED" "OR8H3 WILD-TYPE" 
     TCGA-38-4631      TCGA-38-4632      TCGA-38-6178      TCGA-44-2655 
"OR8H3 WILD-TYPE" "OR8H3 WILD-TYPE" "OR8H3 WILD-TYPE" "OR8H3 WILD-TYPE" 
     TCGA-44-2656      TCGA-44-2657      TCGA-44-2659      TCGA-44-2661 
"OR8H3 WILD-TYPE" "OR8H3 WILD-TYPE" "OR8H3 WILD-TYPE" "OR8H3 WILD-TYPE" 
     TCGA-44-2662      TCGA-44-2665      TCGA-44-2666      TCGA-44-2668 
"OR8H3 WILD-TYPE" "OR8H3 WILD-TYPE" "OR8H3 WILD-TYPE" "OR8H3 WILD-TYPE" 
     TCGA-44-3396      TCGA-44-3398      TCGA-44-3918      TCGA-44-3919 
"OR8H3 WILD-TYPE" "OR8H3 WILD-TYPE"   "OR8H3 MUTATED" "OR8H3 WILD-TYPE" 
     TCGA-44-4112      TCGA-44-5643      TCGA-44-5645      TCGA-44-6144 
"OR8H3 WILD-TYPE" "OR8H3 WILD-TYPE" "OR8H3 WILD-TYPE" "OR8H3 WILD-TYPE" 
     TCGA-44-6145      TCGA-44-6146      TCGA-44-6147      TCGA-44-6148 
"OR8H3 WILD-TYPE" "OR8H3 WILD-TYPE" "OR8H3 WILD-TYPE" "OR8H3 WILD-TYPE" 
     TCGA-44-6774      TCGA-44-6775      TCGA-44-6776      TCGA-44-6777 
"OR8H3 WILD-TYPE" "OR8H3 WILD-TYPE" "OR8H3 WILD-TYPE" "OR8H3 WILD-TYPE" 
     TCGA-44-6778      TCGA-44-6779      TCGA-49-4486      TCGA-49-4487 
"OR8H3 WILD-TYPE" "OR8H3 WILD-TYPE" "OR8H3 WILD-TYPE" "OR8H3 WILD-TYPE" 
     TCGA-49-4488      TCGA-49-4490      TCGA-49-4494      TCGA-49-4501 
"OR8H3 WILD-TYPE" "OR8H3 WILD-TYPE" "OR8H3 WILD-TYPE" "OR8H3 WILD-TYPE" 
     TCGA-49-4505      TCGA-49-4506      TCGA-49-4507      TCGA-49-4510 
"OR8H3 WILD-TYPE" "OR8H3 WILD-TYPE" "OR8H3 WILD-TYPE" "OR8H3 WILD-TYPE" 
     TCGA-49-4512      TCGA-49-4514      TCGA-49-6742      TCGA-49-6743 
"OR8H3 WILD-TYPE" "OR8H3 WILD-TYPE" "OR8H3 WILD-TYPE" "OR8H3 WILD-TYPE" 
     TCGA-49-6744      TCGA-49-6745      TCGA-50-5044      TCGA-50-5045 
"OR8H3 WILD-TYPE" "OR8H3 WILD-TYPE" "OR8H3 WILD-TYPE" "OR8H3 WILD-TYPE" 
     TCGA-50-5049      TCGA-50-5051      TCGA-50-5055      TCGA-50-5066 
"OR8H3 WILD-TYPE" "OR8H3 WILD-TYPE" "OR8H3 WILD-TYPE" "OR8H3 WILD-TYPE" 
     TCGA-50-5068      TCGA-50-5072      TCGA-50-5930      TCGA-50-5931 
"OR8H3 WILD-TYPE" "OR8H3 WILD-TYPE" "OR8H3 WILD-TYPE" "OR8H3 WILD-TYPE" 
     TCGA-50-5932      TCGA-50-5933      TCGA-50-5935      TCGA-50-5936 
"OR8H3 WILD-TYPE"   "OR8H3 MUTATED" "OR8H3 WILD-TYPE" "OR8H3 WILD-TYPE" 
     TCGA-50-5939      TCGA-50-5941      TCGA-50-5942      TCGA-50-5944 
  "OR8H3 MUTATED" "OR8H3 WILD-TYPE" "OR8H3 WILD-TYPE" "OR8H3 WILD-TYPE" 
     TCGA-50-5946      TCGA-50-6590      TCGA-50-6591      TCGA-50-6592 
"OR8H3 WILD-TYPE" "OR8H3 WILD-TYPE" "OR8H3 WILD-TYPE" "OR8H3 WILD-TYPE" 
     TCGA-50-6593      TCGA-50-6594      TCGA-50-6595      TCGA-50-6597 
"OR8H3 WILD-TYPE" "OR8H3 WILD-TYPE" "OR8H3 WILD-TYPE" "OR8H3 WILD-TYPE" 
     TCGA-55-1592      TCGA-55-1594      TCGA-55-1595      TCGA-55-1596 
"OR8H3 WILD-TYPE" "OR8H3 WILD-TYPE" "OR8H3 WILD-TYPE" "OR8H3 WILD-TYPE" 
     TCGA-55-5899      TCGA-55-6543      TCGA-55-6642      TCGA-55-6712 
"OR8H3 WILD-TYPE" "OR8H3 WILD-TYPE" "OR8H3 WILD-TYPE" "OR8H3 WILD-TYPE" 
     TCGA-64-1676      TCGA-64-1677      TCGA-64-1678      TCGA-64-1680 
"OR8H3 WILD-TYPE" "OR8H3 WILD-TYPE" "OR8H3 WILD-TYPE" "OR8H3 WILD-TYPE" 
     TCGA-64-5774      TCGA-64-5775      TCGA-64-5778      TCGA-64-5779 
"OR8H3 WILD-TYPE" "OR8H3 WILD-TYPE" "OR8H3 WILD-TYPE" "OR8H3 WILD-TYPE" 
     TCGA-64-5781      TCGA-64-5815      TCGA-67-3770      TCGA-67-3771 
  "OR8H3 MUTATED" "OR8H3 WILD-TYPE" "OR8H3 WILD-TYPE" "OR8H3 WILD-TYPE" 
     TCGA-67-3772      TCGA-67-3773      TCGA-67-3774      TCGA-67-6215 
"OR8H3 WILD-TYPE" "OR8H3 WILD-TYPE" "OR8H3 WILD-TYPE" "OR8H3 WILD-TYPE" 
     TCGA-67-6216      TCGA-67-6217      TCGA-71-6725      TCGA-73-4658 
"OR8H3 WILD-TYPE" "OR8H3 WILD-TYPE" "OR8H3 WILD-TYPE" "OR8H3 WILD-TYPE" 
     TCGA-73-4659      TCGA-73-4662      TCGA-73-4666      TCGA-73-4668 
"OR8H3 WILD-TYPE" "OR8H3 WILD-TYPE" "OR8H3 WILD-TYPE" "OR8H3 WILD-TYPE" 
     TCGA-73-4670      TCGA-73-4675      TCGA-73-4676      TCGA-73-4677 
"OR8H3 WILD-TYPE" "OR8H3 WILD-TYPE" "OR8H3 WILD-TYPE" "OR8H3 WILD-TYPE" 
     TCGA-91-6828      TCGA-91-6829      TCGA-91-6831      TCGA-91-6835 
"OR8H3 WILD-TYPE" "OR8H3 WILD-TYPE" "OR8H3 WILD-TYPE" "OR8H3 WILD-TYPE" 
     TCGA-91-6836 
"OR8H3 WILD-TYPE" 
     TCGA-05-4249      TCGA-05-4250      TCGA-05-4382      TCGA-05-4384 
"OR8H3 WILD-TYPE" "OR8H3 WILD-TYPE" "OR8H3 WILD-TYPE" "OR8H3 WILD-TYPE" 
     TCGA-05-4390      TCGA-05-4396      TCGA-05-4397      TCGA-05-4398 
"OR8H3 WILD-TYPE"   "OR8H3 MUTATED" "OR8H3 WILD-TYPE"   "OR8H3 MUTATED" 
     TCGA-05-4402      TCGA-05-4405      TCGA-05-4415      TCGA-05-4417 
"OR8H3 WILD-TYPE" "OR8H3 WILD-TYPE" "OR8H3 WILD-TYPE" "OR8H3 WILD-TYPE" 
     TCGA-05-4418      TCGA-05-4420      TCGA-05-4424      TCGA-05-4426 
"OR8H3 WILD-TYPE" "OR8H3 WILD-TYPE" "OR8H3 WILD-TYPE" "OR8H3 WILD-TYPE" 
     TCGA-05-4427      TCGA-05-4430      TCGA-05-4432      TCGA-05-4433 
"OR8H3 WILD-TYPE" "OR8H3 WILD-TYPE"   "OR8H3 MUTATED" "OR8H3 WILD-TYPE" 
     TCGA-05-4434      TCGA-05-5420      TCGA-05-5423      TCGA-05-5425 
"OR8H3 WILD-TYPE" "OR8H3 WILD-TYPE" "OR8H3 WILD-TYPE" "OR8H3 WILD-TYPE" 
     TCGA-05-5429      TCGA-05-5715      TCGA-35-3615      TCGA-35-4122 
"OR8H3 WILD-TYPE" "OR8H3 WILD-TYPE" "OR8H3 WILD-TYPE" "OR8H3 WILD-TYPE" 
     TCGA-35-4123      TCGA-35-5375      TCGA-38-4625      TCGA-38-4626 
"OR8H3 WILD-TYPE" "OR8H3 WILD-TYPE" "OR8H3 WILD-TYPE" "OR8H3 WILD-TYPE" 
     TCGA-38-4627      TCGA-38-4628      TCGA-38-4629      TCGA-38-4630 
"OR8H3 WILD-TYPE" "OR8H3 WILD-TYPE"   "OR8H3 MUTATED" "OR8H3 WILD-TYPE" 
     TCGA-38-4631      TCGA-38-4632      TCGA-38-6178      TCGA-44-2655 
"OR8H3 WILD-TYPE" "OR8H3 WILD-TYPE" "OR8H3 WILD-TYPE" "OR8H3 WILD-TYPE" 
     TCGA-44-2656      TCGA-44-2657      TCGA-44-2659      TCGA-44-2661 
"OR8H3 WILD-TYPE" "OR8H3 WILD-TYPE" "OR8H3 WILD-TYPE" "OR8H3 WILD-TYPE" 
     TCGA-44-2662      TCGA-44-2665      TCGA-44-2666      TCGA-44-2668 
"OR8H3 WILD-TYPE" "OR8H3 WILD-TYPE" "OR8H3 WILD-TYPE" "OR8H3 WILD-TYPE" 
     TCGA-44-3396      TCGA-44-3398      TCGA-44-3918      TCGA-44-3919 
"OR8H3 WILD-TYPE" "OR8H3 WILD-TYPE"   "OR8H3 MUTATED" "OR8H3 WILD-TYPE" 
     TCGA-44-4112      TCGA-44-5643      TCGA-44-5645      TCGA-44-6144 
"OR8H3 WILD-TYPE" "OR8H3 WILD-TYPE" "OR8H3 WILD-TYPE" "OR8H3 WILD-TYPE" 
     TCGA-44-6145      TCGA-44-6146      TCGA-44-6147      TCGA-44-6148 
"OR8H3 WILD-TYPE" "OR8H3 WILD-TYPE" "OR8H3 WILD-TYPE" "OR8H3 WILD-TYPE" 
     TCGA-44-6774      TCGA-44-6775      TCGA-44-6776      TCGA-44-6777 
"OR8H3 WILD-TYPE" "OR8H3 WILD-TYPE" "OR8H3 WILD-TYPE" "OR8H3 WILD-TYPE" 
     TCGA-44-6778      TCGA-44-6779      TCGA-49-4486      TCGA-49-4487 
"OR8H3 WILD-TYPE" "OR8H3 WILD-TYPE" "OR8H3 WILD-TYPE" "OR8H3 WILD-TYPE" 
     TCGA-49-4488      TCGA-49-4490      TCGA-49-4494      TCGA-49-4501 
"OR8H3 WILD-TYPE" "OR8H3 WILD-TYPE" "OR8H3 WILD-TYPE" "OR8H3 WILD-TYPE" 
     TCGA-49-4505      TCGA-49-4506      TCGA-49-4507      TCGA-49-4510 
"OR8H3 WILD-TYPE" "OR8H3 WILD-TYPE" "OR8H3 WILD-TYPE" "OR8H3 WILD-TYPE" 
     TCGA-49-4512      TCGA-49-4514      TCGA-49-6742      TCGA-49-6743 
"OR8H3 WILD-TYPE" "OR8H3 WILD-TYPE" "OR8H3 WILD-TYPE" "OR8H3 WILD-TYPE" 
     TCGA-49-6744      TCGA-49-6745      TCGA-50-5044      TCGA-50-5045 
"OR8H3 WILD-TYPE" "OR8H3 WILD-TYPE" "OR8H3 WILD-TYPE" "OR8H3 WILD-TYPE" 
     TCGA-50-5049      TCGA-50-5051      TCGA-50-5055      TCGA-50-5066 
"OR8H3 WILD-TYPE" "OR8H3 WILD-TYPE" "OR8H3 WILD-TYPE" "OR8H3 WILD-TYPE" 
     TCGA-50-5068      TCGA-50-5072      TCGA-50-5930      TCGA-50-5931 
"OR8H3 WILD-TYPE" "OR8H3 WILD-TYPE" "OR8H3 WILD-TYPE" "OR8H3 WILD-TYPE" 
     TCGA-50-5932      TCGA-50-5933      TCGA-50-5935      TCGA-50-5936 
"OR8H3 WILD-TYPE"   "OR8H3 MUTATED" "OR8H3 WILD-TYPE" "OR8H3 WILD-TYPE" 
     TCGA-50-5939      TCGA-50-5941      TCGA-50-5942      TCGA-50-5944 
  "OR8H3 MUTATED" "OR8H3 WILD-TYPE" "OR8H3 WILD-TYPE" "OR8H3 WILD-TYPE" 
     TCGA-50-5946      TCGA-50-6590      TCGA-50-6591      TCGA-50-6592 
"OR8H3 WILD-TYPE" "OR8H3 WILD-TYPE" "OR8H3 WILD-TYPE" "OR8H3 WILD-TYPE" 
     TCGA-50-6593      TCGA-50-6594      TCGA-50-6595      TCGA-50-6597 
"OR8H3 WILD-TYPE" "OR8H3 WILD-TYPE" "OR8H3 WILD-TYPE" "OR8H3 WILD-TYPE" 
     TCGA-55-1592      TCGA-55-1594      TCGA-55-1595      TCGA-55-1596 
"OR8H3 WILD-TYPE" "OR8H3 WILD-TYPE" "OR8H3 WILD-TYPE" "OR8H3 WILD-TYPE" 
     TCGA-55-5899      TCGA-55-6543      TCGA-55-6642      TCGA-55-6712 
"OR8H3 WILD-TYPE" "OR8H3 WILD-TYPE" "OR8H3 WILD-TYPE" "OR8H3 WILD-TYPE" 
     TCGA-64-1676      TCGA-64-1677      TCGA-64-1678      TCGA-64-1680 
"OR8H3 WILD-TYPE" "OR8H3 WILD-TYPE" "OR8H3 WILD-TYPE" "OR8H3 WILD-TYPE" 
     TCGA-64-5774      TCGA-64-5775      TCGA-64-5778      TCGA-64-5779 
"OR8H3 WILD-TYPE" "OR8H3 WILD-TYPE" "OR8H3 WILD-TYPE" "OR8H3 WILD-TYPE" 
     TCGA-64-5781      TCGA-64-5815      TCGA-67-3770      TCGA-67-3771 
  "OR8H3 MUTATED" "OR8H3 WILD-TYPE" "OR8H3 WILD-TYPE" "OR8H3 WILD-TYPE" 
     TCGA-67-3772      TCGA-67-3773      TCGA-67-3774      TCGA-67-6215 
"OR8H3 WILD-TYPE" "OR8H3 WILD-TYPE" "OR8H3 WILD-TYPE" "OR8H3 WILD-TYPE" 
     TCGA-67-6216      TCGA-67-6217      TCGA-71-6725      TCGA-73-4658 
"OR8H3 WILD-TYPE" "OR8H3 WILD-TYPE" "OR8H3 WILD-TYPE" "OR8H3 WILD-TYPE" 
     TCGA-73-4659      TCGA-73-4662      TCGA-73-4666      TCGA-73-4668 
"OR8H3 WILD-TYPE" "OR8H3 WILD-TYPE" "OR8H3 WILD-TYPE" "OR8H3 WILD-TYPE" 
     TCGA-73-4670      TCGA-73-4675      TCGA-73-4676      TCGA-73-4677 
"OR8H3 WILD-TYPE" "OR8H3 WILD-TYPE" "OR8H3 WILD-TYPE" "OR8H3 WILD-TYPE" 
     TCGA-91-6828      TCGA-91-6829      TCGA-91-6831      TCGA-91-6835 
"OR8H3 WILD-TYPE" "OR8H3 WILD-TYPE" "OR8H3 WILD-TYPE" "OR8H3 WILD-TYPE" 
     TCGA-91-6836 
"OR8H3 WILD-TYPE" 
     TCGA-05-4249      TCGA-05-4250      TCGA-05-4382      TCGA-05-4384 
"OR8H3 WILD-TYPE" "OR8H3 WILD-TYPE" "OR8H3 WILD-TYPE" "OR8H3 WILD-TYPE" 
     TCGA-05-4390      TCGA-05-4396      TCGA-05-4397      TCGA-05-4398 
"OR8H3 WILD-TYPE"   "OR8H3 MUTATED" "OR8H3 WILD-TYPE"   "OR8H3 MUTATED" 
     TCGA-05-4402      TCGA-05-4405      TCGA-05-4415      TCGA-05-4417 
"OR8H3 WILD-TYPE" "OR8H3 WILD-TYPE" "OR8H3 WILD-TYPE" "OR8H3 WILD-TYPE" 
     TCGA-05-4418      TCGA-05-4420      TCGA-05-4424      TCGA-05-4426 
"OR8H3 WILD-TYPE" "OR8H3 WILD-TYPE" "OR8H3 WILD-TYPE" "OR8H3 WILD-TYPE" 
     TCGA-05-4427      TCGA-05-4430      TCGA-05-4432      TCGA-05-4433 
"OR8H3 WILD-TYPE" "OR8H3 WILD-TYPE"   "OR8H3 MUTATED" "OR8H3 WILD-TYPE" 
     TCGA-05-4434      TCGA-05-5420      TCGA-05-5423      TCGA-05-5425 
"OR8H3 WILD-TYPE" "OR8H3 WILD-TYPE" "OR8H3 WILD-TYPE" "OR8H3 WILD-TYPE" 
     TCGA-05-5429      TCGA-05-5715      TCGA-35-3615      TCGA-35-4122 
"OR8H3 WILD-TYPE" "OR8H3 WILD-TYPE" "OR8H3 WILD-TYPE" "OR8H3 WILD-TYPE" 
     TCGA-35-4123      TCGA-35-5375      TCGA-38-4625      TCGA-38-4626 
"OR8H3 WILD-TYPE" "OR8H3 WILD-TYPE" "OR8H3 WILD-TYPE" "OR8H3 WILD-TYPE" 
     TCGA-38-4627      TCGA-38-4628      TCGA-38-4629      TCGA-38-4630 
"OR8H3 WILD-TYPE" "OR8H3 WILD-TYPE"   "OR8H3 MUTATED" "OR8H3 WILD-TYPE" 
     TCGA-38-4631      TCGA-38-4632      TCGA-38-6178      TCGA-44-2655 
"OR8H3 WILD-TYPE" "OR8H3 WILD-TYPE" "OR8H3 WILD-TYPE" "OR8H3 WILD-TYPE" 
     TCGA-44-2656      TCGA-44-2657      TCGA-44-2659      TCGA-44-2661 
"OR8H3 WILD-TYPE" "OR8H3 WILD-TYPE" "OR8H3 WILD-TYPE" "OR8H3 WILD-TYPE" 
     TCGA-44-2662      TCGA-44-2665      TCGA-44-2666      TCGA-44-2668 
"OR8H3 WILD-TYPE" "OR8H3 WILD-TYPE" "OR8H3 WILD-TYPE" "OR8H3 WILD-TYPE" 
     TCGA-44-3396      TCGA-44-3398      TCGA-44-3918      TCGA-44-3919 
"OR8H3 WILD-TYPE" "OR8H3 WILD-TYPE"   "OR8H3 MUTATED" "OR8H3 WILD-TYPE" 
     TCGA-44-4112      TCGA-44-5643      TCGA-44-5645      TCGA-44-6144 
"OR8H3 WILD-TYPE" "OR8H3 WILD-TYPE" "OR8H3 WILD-TYPE" "OR8H3 WILD-TYPE" 
     TCGA-44-6145      TCGA-44-6146      TCGA-44-6147      TCGA-44-6148 
"OR8H3 WILD-TYPE" "OR8H3 WILD-TYPE" "OR8H3 WILD-TYPE" "OR8H3 WILD-TYPE" 
     TCGA-44-6774      TCGA-44-6775      TCGA-44-6776      TCGA-44-6777 
"OR8H3 WILD-TYPE" "OR8H3 WILD-TYPE" "OR8H3 WILD-TYPE" "OR8H3 WILD-TYPE" 
     TCGA-44-6778      TCGA-44-6779      TCGA-49-4486      TCGA-49-4487 
"OR8H3 WILD-TYPE" "OR8H3 WILD-TYPE" "OR8H3 WILD-TYPE" "OR8H3 WILD-TYPE" 
     TCGA-49-4488      TCGA-49-4490      TCGA-49-4494      TCGA-49-4501 
"OR8H3 WILD-TYPE" "OR8H3 WILD-TYPE" "OR8H3 WILD-TYPE" "OR8H3 WILD-TYPE" 
     TCGA-49-4505      TCGA-49-4506      TCGA-49-4507      TCGA-49-4510 
"OR8H3 WILD-TYPE" "OR8H3 WILD-TYPE" "OR8H3 WILD-TYPE" "OR8H3 WILD-TYPE" 
     TCGA-49-4512      TCGA-49-4514      TCGA-49-6742      TCGA-49-6743 
"OR8H3 WILD-TYPE" "OR8H3 WILD-TYPE" "OR8H3 WILD-TYPE" "OR8H3 WILD-TYPE" 
     TCGA-49-6744      TCGA-49-6745      TCGA-50-5044      TCGA-50-5045 
"OR8H3 WILD-TYPE" "OR8H3 WILD-TYPE" "OR8H3 WILD-TYPE" "OR8H3 WILD-TYPE" 
     TCGA-50-5049      TCGA-50-5051      TCGA-50-5055      TCGA-50-5066 
"OR8H3 WILD-TYPE" "OR8H3 WILD-TYPE" "OR8H3 WILD-TYPE" "OR8H3 WILD-TYPE" 
     TCGA-50-5068      TCGA-50-5072      TCGA-50-5930      TCGA-50-5931 
"OR8H3 WILD-TYPE" "OR8H3 WILD-TYPE" "OR8H3 WILD-TYPE" "OR8H3 WILD-TYPE" 
     TCGA-50-5932      TCGA-50-5933      TCGA-50-5935      TCGA-50-5936 
"OR8H3 WILD-TYPE"   "OR8H3 MUTATED" "OR8H3 WILD-TYPE" "OR8H3 WILD-TYPE" 
     TCGA-50-5939      TCGA-50-5941      TCGA-50-5942      TCGA-50-5944 
  "OR8H3 MUTATED" "OR8H3 WILD-TYPE" "OR8H3 WILD-TYPE" "OR8H3 WILD-TYPE" 
     TCGA-50-5946      TCGA-50-6590      TCGA-50-6591      TCGA-50-6592 
"OR8H3 WILD-TYPE" "OR8H3 WILD-TYPE" "OR8H3 WILD-TYPE" "OR8H3 WILD-TYPE" 
     TCGA-50-6593      TCGA-50-6594      TCGA-50-6595      TCGA-50-6597 
"OR8H3 WILD-TYPE" "OR8H3 WILD-TYPE" "OR8H3 WILD-TYPE" "OR8H3 WILD-TYPE" 
     TCGA-55-1592      TCGA-55-1594      TCGA-55-1595      TCGA-55-1596 
"OR8H3 WILD-TYPE" "OR8H3 WILD-TYPE" "OR8H3 WILD-TYPE" "OR8H3 WILD-TYPE" 
     TCGA-55-5899      TCGA-55-6543      TCGA-55-6642      TCGA-55-6712 
"OR8H3 WILD-TYPE" "OR8H3 WILD-TYPE" "OR8H3 WILD-TYPE" "OR8H3 WILD-TYPE" 
     TCGA-64-1676      TCGA-64-1677      TCGA-64-1678      TCGA-64-1680 
"OR8H3 WILD-TYPE" "OR8H3 WILD-TYPE" "OR8H3 WILD-TYPE" "OR8H3 WILD-TYPE" 
     TCGA-64-5774      TCGA-64-5775      TCGA-64-5778      TCGA-64-5779 
"OR8H3 WILD-TYPE" "OR8H3 WILD-TYPE" "OR8H3 WILD-TYPE" "OR8H3 WILD-TYPE" 
     TCGA-64-5781      TCGA-64-5815      TCGA-67-3770      TCGA-67-3771 
  "OR8H3 MUTATED" "OR8H3 WILD-TYPE" "OR8H3 WILD-TYPE" "OR8H3 WILD-TYPE" 
     TCGA-67-3772      TCGA-67-3773      TCGA-67-3774      TCGA-67-6215 
"OR8H3 WILD-TYPE" "OR8H3 WILD-TYPE" "OR8H3 WILD-TYPE" "OR8H3 WILD-TYPE" 
     TCGA-67-6216      TCGA-67-6217      TCGA-71-6725      TCGA-73-4658 
"OR8H3 WILD-TYPE" "OR8H3 WILD-TYPE" "OR8H3 WILD-TYPE" "OR8H3 WILD-TYPE" 
     TCGA-73-4659      TCGA-73-4662      TCGA-73-4666      TCGA-73-4668 
"OR8H3 WILD-TYPE" "OR8H3 WILD-TYPE" "OR8H3 WILD-TYPE" "OR8H3 WILD-TYPE" 
     TCGA-73-4670      TCGA-73-4675      TCGA-73-4676      TCGA-73-4677 
"OR8H3 WILD-TYPE" "OR8H3 WILD-TYPE" "OR8H3 WILD-TYPE" "OR8H3 WILD-TYPE" 
     TCGA-91-6828      TCGA-91-6829      TCGA-91-6831      TCGA-91-6835 
"OR8H3 WILD-TYPE" "OR8H3 WILD-TYPE" "OR8H3 WILD-TYPE" "OR8H3 WILD-TYPE" 
     TCGA-91-6836 
"OR8H3 WILD-TYPE" 
[1] "hr=" "1.2"
D73V2, continuous
D73V3, binary
[1] "tbl2"
                 cls
clus              [,1] [,2]
  OR8H3 MUTATED      4    7
  OR8H3 WILD-TYPE   89   72
        clus
vv       OR8H3 MUTATED OR8H3 WILD-TYPE
  FEMALE             4              89
  MALE               7              72
D73V4, continuous
D73V5, multiclass
D73V6, multiclass
    clus
vv   OR8H3 MUTATED OR8H3 WILD-TYPE
  T1             2              39
  T2             4             104
  T3             2              12
  T4             3               5
D73V7, multiclass
       clus
vv      OR8H3 MUTATED OR8H3 WILD-TYPE
  N0                5              90
  N1                3              34
  N2+N3             3              32
D73V8, multiclass
    clus
vv   OR8H3 MUTATED OR8H3 WILD-TYPE
  M0            11             126
  M1             0               9
  MX             0              22
D73V9, multiclass
     clus
vv    OR8H3 MUTATED OR8H3 WILD-TYPE
  I               4              84
  II              3              30
  III             4              35
  IV              0               9
D73V10, binary
[1] "tbl2"
                 cls
clus              [,1] [,2]
  OR8H3 MUTATED      1   10
  OR8H3 WILD-TYPE   15  146
     clus
vv    OR8H3 MUTATED OR8H3 WILD-TYPE
  NO              1              15
  YES            10             146
D73V11, continuous
D73V12, continuous
D73V13, multiclass
                                             clus
vv                                            OR8H3 MUTATED OR8H3 WILD-TYPE
  CURRENT REFORMED SMOKER FOR < OR = 15 YEARS             4              58
  CURRENT REFORMED SMOKER FOR > 15 YEARS                  4              42
  CURRENT SMOKER                                          2              26
  LIFELONG NON-SMOKER                                     0              24
D73V14, continuous

Clustering(74) Variable = IL1RAPL1 MUTATION ANALYSIS
D74V1, survival
                    sevent
clus2                 0  1
  IL1RAPL1 MUTATED    5  5
  IL1RAPL1 WILD-TYPE 94 45
  IL1RAPL1 MUTATED IL1RAPL1 WILD-TYPE 
                10                139 
  IL1RAPL1 MUTATED IL1RAPL1 WILD-TYPE 
                 5                 45 
$`IL1RAPL1 MUTATED`
TCGA-38-4626 TCGA-38-4632 TCGA-44-2662 TCGA-44-2665 TCGA-44-6774 TCGA-49-4488 
       85.32        44.61        15.78        13.15         5.42        28.57 
TCGA-49-4505 TCGA-50-5931 TCGA-64-1677 TCGA-67-3774 
       14.07         8.78        20.65         0.59 

$`IL1RAPL1 WILD-TYPE`
TCGA-05-4249 TCGA-05-4250 TCGA-05-4382 TCGA-05-4384 TCGA-05-4390 TCGA-05-4396 
       38.07         3.98        19.92        14.01        37.02         9.96 
TCGA-05-4397 TCGA-05-4398 TCGA-05-4402 TCGA-05-4405 TCGA-05-4415 TCGA-05-4417 
       24.03        47.05         8.02        20.05         2.96        14.93 
TCGA-05-4418 TCGA-05-4420 TCGA-05-4424 TCGA-05-4426 TCGA-05-4427 TCGA-05-4430 
        8.98        29.95        30.02        26.01        26.01        25.02 
TCGA-05-4432 TCGA-05-4433 TCGA-05-4434 TCGA-05-5420 TCGA-05-5423 TCGA-05-5425 
       25.02        24.00        15.02         1.02         4.96         2.96 
TCGA-05-5429 TCGA-05-5715 TCGA-35-3615 TCGA-35-4122 TCGA-35-4123 TCGA-35-5375 
        0.99         2.04         0.46         7.36         5.95         8.68 
TCGA-38-4625 TCGA-38-4627 TCGA-38-4628 TCGA-38-4629 TCGA-38-4630 TCGA-38-4631 
       47.61        37.71        49.02        28.37        35.28        11.64 
TCGA-38-6178 TCGA-44-2655 TCGA-44-2656 TCGA-44-2657 TCGA-44-2659 TCGA-44-2661 
        5.19        18.87        19.10        13.15        17.39         3.39 
TCGA-44-2666 TCGA-44-2668 TCGA-44-3396 TCGA-44-3398 TCGA-44-3918 TCGA-44-3919 
        3.19         8.09        10.22         8.32         6.44         6.21 
TCGA-44-4112 TCGA-44-5643 TCGA-44-5645 TCGA-44-6144 TCGA-44-6145 TCGA-44-6146 
        4.60         3.48         6.84         0.30         3.35         9.93 
TCGA-44-6147 TCGA-44-6148 TCGA-44-6775 TCGA-44-6776 TCGA-44-6777 TCGA-44-6778 
        7.76         3.12         2.70        63.72        32.45        36.49 
TCGA-44-6779 TCGA-49-4486 TCGA-49-4487 TCGA-49-4490 TCGA-49-4494 TCGA-49-4501 
       16.41        76.21        28.11        12.66        35.54        46.72 
TCGA-49-4506 TCGA-49-4507 TCGA-49-4510 TCGA-49-4512 TCGA-49-4514 TCGA-49-6742 
       32.84         8.81        29.46        29.75        43.20        15.02 
TCGA-49-6743 TCGA-49-6744 TCGA-49-6745 TCGA-50-5044 TCGA-50-5045 TCGA-50-5049 
       12.13        12.99         4.93        20.48        71.47        48.82 
TCGA-50-5051 TCGA-50-5055 TCGA-50-5066 TCGA-50-5068 TCGA-50-5072 TCGA-50-5930 
       14.96        25.81         9.76        49.28         8.05         9.27 
TCGA-50-5932 TCGA-50-5933 TCGA-50-5935 TCGA-50-5936 TCGA-50-5939 TCGA-50-5941 
       35.87        77.88        21.47         8.45        15.12         9.37 
TCGA-50-5942 TCGA-50-5944 TCGA-50-5946 TCGA-50-6590 TCGA-50-6591 TCGA-50-6592 
        4.44        12.26        11.47        42.31         3.88        25.51 
TCGA-50-6593 TCGA-50-6594 TCGA-50-6595 TCGA-50-6597 TCGA-55-1592 TCGA-55-1594 
       11.05        12.16         6.21        33.37        23.05        38.73 
TCGA-55-1595 TCGA-55-1596 TCGA-55-5899 TCGA-55-6543 TCGA-55-6642 TCGA-55-6712 
       48.62        45.17         2.86         0.07        32.61         0.79 
TCGA-64-1676 TCGA-64-1678 TCGA-64-1680 TCGA-64-5774 TCGA-64-5775 TCGA-64-5778 
       56.81        39.09        37.02        83.84         0.10        30.44 
TCGA-64-5779 TCGA-64-5781 TCGA-64-5815 TCGA-67-3770 TCGA-67-3771 TCGA-67-3772 
       16.67        39.52         7.33         0.99         1.97         0.59 
TCGA-67-3773 TCGA-67-6215 TCGA-67-6216 TCGA-67-6217 TCGA-71-6725 TCGA-73-4658 
        2.04         0.89         0.69        13.87         2.01        52.57 
TCGA-73-4659 TCGA-73-4662 TCGA-73-4666 TCGA-73-4668 TCGA-73-4670 TCGA-73-4675 
       23.38        29.95        20.28        15.35         0.46         1.32 
TCGA-73-4676 TCGA-73-4677 TCGA-91-6828 TCGA-91-6829 TCGA-91-6831 TCGA-91-6835 
        4.01         1.25         1.22        41.33         1.28         1.15 
TCGA-91-6836 
        0.36 

  IL1RAPL1 MUTATED IL1RAPL1 WILD-TYPE 
              0.59               0.07 
  IL1RAPL1 MUTATED IL1RAPL1 WILD-TYPE 
             85.32              83.84 
  IL1RAPL1 MUTATED IL1RAPL1 WILD-TYPE 
            14.925             13.150 
[1] "0.6 - 85.3 (14.9)" "0.1 - 83.8 (13.2)"
        TCGA-05-4249         TCGA-05-4250         TCGA-05-4382 
"IL1RAPL1 WILD-TYPE" "IL1RAPL1 WILD-TYPE" "IL1RAPL1 WILD-TYPE" 
        TCGA-05-4384         TCGA-05-4390         TCGA-05-4396 
"IL1RAPL1 WILD-TYPE" "IL1RAPL1 WILD-TYPE" "IL1RAPL1 WILD-TYPE" 
        TCGA-05-4397         TCGA-05-4398         TCGA-05-4402 
"IL1RAPL1 WILD-TYPE" "IL1RAPL1 WILD-TYPE" "IL1RAPL1 WILD-TYPE" 
        TCGA-05-4405         TCGA-05-4415         TCGA-05-4417 
"IL1RAPL1 WILD-TYPE" "IL1RAPL1 WILD-TYPE" "IL1RAPL1 WILD-TYPE" 
        TCGA-05-4418         TCGA-05-4420         TCGA-05-4424 
"IL1RAPL1 WILD-TYPE" "IL1RAPL1 WILD-TYPE" "IL1RAPL1 WILD-TYPE" 
        TCGA-05-4426         TCGA-05-4427         TCGA-05-4430 
"IL1RAPL1 WILD-TYPE" "IL1RAPL1 WILD-TYPE" "IL1RAPL1 WILD-TYPE" 
        TCGA-05-4432         TCGA-05-4433         TCGA-05-4434 
"IL1RAPL1 WILD-TYPE" "IL1RAPL1 WILD-TYPE" "IL1RAPL1 WILD-TYPE" 
        TCGA-05-5420         TCGA-05-5423         TCGA-05-5425 
"IL1RAPL1 WILD-TYPE" "IL1RAPL1 WILD-TYPE" "IL1RAPL1 WILD-TYPE" 
        TCGA-05-5429         TCGA-05-5715         TCGA-35-3615 
"IL1RAPL1 WILD-TYPE" "IL1RAPL1 WILD-TYPE" "IL1RAPL1 WILD-TYPE" 
        TCGA-35-4122         TCGA-35-4123         TCGA-35-5375 
"IL1RAPL1 WILD-TYPE" "IL1RAPL1 WILD-TYPE" "IL1RAPL1 WILD-TYPE" 
        TCGA-38-4625         TCGA-38-4626         TCGA-38-4627 
"IL1RAPL1 WILD-TYPE"   "IL1RAPL1 MUTATED" "IL1RAPL1 WILD-TYPE" 
        TCGA-38-4628         TCGA-38-4629         TCGA-38-4630 
"IL1RAPL1 WILD-TYPE" "IL1RAPL1 WILD-TYPE" "IL1RAPL1 WILD-TYPE" 
        TCGA-38-4631         TCGA-38-4632         TCGA-38-6178 
"IL1RAPL1 WILD-TYPE"   "IL1RAPL1 MUTATED" "IL1RAPL1 WILD-TYPE" 
        TCGA-44-2655         TCGA-44-2656         TCGA-44-2657 
"IL1RAPL1 WILD-TYPE" "IL1RAPL1 WILD-TYPE" "IL1RAPL1 WILD-TYPE" 
        TCGA-44-2659         TCGA-44-2661         TCGA-44-2662 
"IL1RAPL1 WILD-TYPE" "IL1RAPL1 WILD-TYPE"   "IL1RAPL1 MUTATED" 
        TCGA-44-2665         TCGA-44-2666         TCGA-44-2668 
  "IL1RAPL1 MUTATED" "IL1RAPL1 WILD-TYPE" "IL1RAPL1 WILD-TYPE" 
        TCGA-44-3396         TCGA-44-3398         TCGA-44-3918 
"IL1RAPL1 WILD-TYPE" "IL1RAPL1 WILD-TYPE" "IL1RAPL1 WILD-TYPE" 
        TCGA-44-3919         TCGA-44-4112         TCGA-44-5643 
"IL1RAPL1 WILD-TYPE" "IL1RAPL1 WILD-TYPE" "IL1RAPL1 WILD-TYPE" 
        TCGA-44-5645         TCGA-44-6144         TCGA-44-6145 
"IL1RAPL1 WILD-TYPE" "IL1RAPL1 WILD-TYPE" "IL1RAPL1 WILD-TYPE" 
        TCGA-44-6146         TCGA-44-6147         TCGA-44-6148 
"IL1RAPL1 WILD-TYPE" "IL1RAPL1 WILD-TYPE" "IL1RAPL1 WILD-TYPE" 
        TCGA-44-6774         TCGA-44-6775         TCGA-44-6776 
  "IL1RAPL1 MUTATED" "IL1RAPL1 WILD-TYPE" "IL1RAPL1 WILD-TYPE" 
        TCGA-44-6777         TCGA-44-6778         TCGA-44-6779 
"IL1RAPL1 WILD-TYPE" "IL1RAPL1 WILD-TYPE" "IL1RAPL1 WILD-TYPE" 
        TCGA-49-4486         TCGA-49-4487         TCGA-49-4488 
"IL1RAPL1 WILD-TYPE" "IL1RAPL1 WILD-TYPE"   "IL1RAPL1 MUTATED" 
        TCGA-49-4490         TCGA-49-4494         TCGA-49-4501 
"IL1RAPL1 WILD-TYPE" "IL1RAPL1 WILD-TYPE" "IL1RAPL1 WILD-TYPE" 
        TCGA-49-4505         TCGA-49-4506         TCGA-49-4507 
  "IL1RAPL1 MUTATED" "IL1RAPL1 WILD-TYPE" "IL1RAPL1 WILD-TYPE" 
        TCGA-49-4510         TCGA-49-4512         TCGA-49-4514 
"IL1RAPL1 WILD-TYPE" "IL1RAPL1 WILD-TYPE" "IL1RAPL1 WILD-TYPE" 
        TCGA-49-6742         TCGA-49-6743         TCGA-49-6744 
"IL1RAPL1 WILD-TYPE" "IL1RAPL1 WILD-TYPE" "IL1RAPL1 WILD-TYPE" 
        TCGA-49-6745         TCGA-50-5044         TCGA-50-5045 
"IL1RAPL1 WILD-TYPE" "IL1RAPL1 WILD-TYPE" "IL1RAPL1 WILD-TYPE" 
        TCGA-50-5049         TCGA-50-5051         TCGA-50-5055 
"IL1RAPL1 WILD-TYPE" "IL1RAPL1 WILD-TYPE" "IL1RAPL1 WILD-TYPE" 
        TCGA-50-5066         TCGA-50-5068         TCGA-50-5072 
"IL1RAPL1 WILD-TYPE" "IL1RAPL1 WILD-TYPE" "IL1RAPL1 WILD-TYPE" 
        TCGA-50-5930         TCGA-50-5931         TCGA-50-5932 
"IL1RAPL1 WILD-TYPE"   "IL1RAPL1 MUTATED" "IL1RAPL1 WILD-TYPE" 
        TCGA-50-5933         TCGA-50-5935         TCGA-50-5936 
"IL1RAPL1 WILD-TYPE" "IL1RAPL1 WILD-TYPE" "IL1RAPL1 WILD-TYPE" 
        TCGA-50-5939         TCGA-50-5941         TCGA-50-5942 
"IL1RAPL1 WILD-TYPE" "IL1RAPL1 WILD-TYPE" "IL1RAPL1 WILD-TYPE" 
        TCGA-50-5944         TCGA-50-5946         TCGA-50-6590 
"IL1RAPL1 WILD-TYPE" "IL1RAPL1 WILD-TYPE" "IL1RAPL1 WILD-TYPE" 
        TCGA-50-6591         TCGA-50-6592         TCGA-50-6593 
"IL1RAPL1 WILD-TYPE" "IL1RAPL1 WILD-TYPE" "IL1RAPL1 WILD-TYPE" 
        TCGA-50-6594         TCGA-50-6595         TCGA-50-6597 
"IL1RAPL1 WILD-TYPE" "IL1RAPL1 WILD-TYPE" "IL1RAPL1 WILD-TYPE" 
        TCGA-55-1592         TCGA-55-1594         TCGA-55-1595 
"IL1RAPL1 WILD-TYPE" "IL1RAPL1 WILD-TYPE" "IL1RAPL1 WILD-TYPE" 
        TCGA-55-1596         TCGA-55-5899         TCGA-55-6543 
"IL1RAPL1 WILD-TYPE" "IL1RAPL1 WILD-TYPE" "IL1RAPL1 WILD-TYPE" 
        TCGA-55-6642         TCGA-55-6712         TCGA-64-1676 
"IL1RAPL1 WILD-TYPE" "IL1RAPL1 WILD-TYPE" "IL1RAPL1 WILD-TYPE" 
        TCGA-64-1677         TCGA-64-1678         TCGA-64-1680 
  "IL1RAPL1 MUTATED" "IL1RAPL1 WILD-TYPE" "IL1RAPL1 WILD-TYPE" 
        TCGA-64-5774         TCGA-64-5775         TCGA-64-5778 
"IL1RAPL1 WILD-TYPE" "IL1RAPL1 WILD-TYPE" "IL1RAPL1 WILD-TYPE" 
        TCGA-64-5779         TCGA-64-5781         TCGA-64-5815 
"IL1RAPL1 WILD-TYPE" "IL1RAPL1 WILD-TYPE" "IL1RAPL1 WILD-TYPE" 
        TCGA-67-3770         TCGA-67-3771         TCGA-67-3772 
"IL1RAPL1 WILD-TYPE" "IL1RAPL1 WILD-TYPE" "IL1RAPL1 WILD-TYPE" 
        TCGA-67-3773         TCGA-67-3774         TCGA-67-6215 
"IL1RAPL1 WILD-TYPE"   "IL1RAPL1 MUTATED" "IL1RAPL1 WILD-TYPE" 
        TCGA-67-6216         TCGA-67-6217         TCGA-71-6725 
"IL1RAPL1 WILD-TYPE" "IL1RAPL1 WILD-TYPE" "IL1RAPL1 WILD-TYPE" 
        TCGA-73-4658         TCGA-73-4659         TCGA-73-4662 
"IL1RAPL1 WILD-TYPE" "IL1RAPL1 WILD-TYPE" "IL1RAPL1 WILD-TYPE" 
        TCGA-73-4666         TCGA-73-4668         TCGA-73-4670 
"IL1RAPL1 WILD-TYPE" "IL1RAPL1 WILD-TYPE" "IL1RAPL1 WILD-TYPE" 
        TCGA-73-4675         TCGA-73-4676         TCGA-73-4677 
"IL1RAPL1 WILD-TYPE" "IL1RAPL1 WILD-TYPE" "IL1RAPL1 WILD-TYPE" 
        TCGA-91-6828         TCGA-91-6829         TCGA-91-6831 
"IL1RAPL1 WILD-TYPE" "IL1RAPL1 WILD-TYPE" "IL1RAPL1 WILD-TYPE" 
        TCGA-91-6835         TCGA-91-6836 
"IL1RAPL1 WILD-TYPE" "IL1RAPL1 WILD-TYPE" 
        TCGA-05-4249         TCGA-05-4250         TCGA-05-4382 
"IL1RAPL1 WILD-TYPE" "IL1RAPL1 WILD-TYPE" "IL1RAPL1 WILD-TYPE" 
        TCGA-05-4384         TCGA-05-4390         TCGA-05-4396 
"IL1RAPL1 WILD-TYPE" "IL1RAPL1 WILD-TYPE" "IL1RAPL1 WILD-TYPE" 
        TCGA-05-4397         TCGA-05-4398         TCGA-05-4402 
"IL1RAPL1 WILD-TYPE" "IL1RAPL1 WILD-TYPE" "IL1RAPL1 WILD-TYPE" 
        TCGA-05-4405         TCGA-05-4415         TCGA-05-4417 
"IL1RAPL1 WILD-TYPE" "IL1RAPL1 WILD-TYPE" "IL1RAPL1 WILD-TYPE" 
        TCGA-05-4418         TCGA-05-4420         TCGA-05-4424 
"IL1RAPL1 WILD-TYPE" "IL1RAPL1 WILD-TYPE" "IL1RAPL1 WILD-TYPE" 
        TCGA-05-4426         TCGA-05-4427         TCGA-05-4430 
"IL1RAPL1 WILD-TYPE" "IL1RAPL1 WILD-TYPE" "IL1RAPL1 WILD-TYPE" 
        TCGA-05-4432         TCGA-05-4433         TCGA-05-4434 
"IL1RAPL1 WILD-TYPE" "IL1RAPL1 WILD-TYPE" "IL1RAPL1 WILD-TYPE" 
        TCGA-05-5420         TCGA-05-5423         TCGA-05-5425 
"IL1RAPL1 WILD-TYPE" "IL1RAPL1 WILD-TYPE" "IL1RAPL1 WILD-TYPE" 
        TCGA-05-5429         TCGA-05-5715         TCGA-35-3615 
"IL1RAPL1 WILD-TYPE" "IL1RAPL1 WILD-TYPE" "IL1RAPL1 WILD-TYPE" 
        TCGA-35-4122         TCGA-35-4123         TCGA-35-5375 
"IL1RAPL1 WILD-TYPE" "IL1RAPL1 WILD-TYPE" "IL1RAPL1 WILD-TYPE" 
        TCGA-38-4625         TCGA-38-4626         TCGA-38-4627 
"IL1RAPL1 WILD-TYPE"   "IL1RAPL1 MUTATED" "IL1RAPL1 WILD-TYPE" 
        TCGA-38-4628         TCGA-38-4629         TCGA-38-4630 
"IL1RAPL1 WILD-TYPE" "IL1RAPL1 WILD-TYPE" "IL1RAPL1 WILD-TYPE" 
        TCGA-38-4631         TCGA-38-4632         TCGA-38-6178 
"IL1RAPL1 WILD-TYPE"   "IL1RAPL1 MUTATED" "IL1RAPL1 WILD-TYPE" 
        TCGA-44-2655         TCGA-44-2656         TCGA-44-2657 
"IL1RAPL1 WILD-TYPE" "IL1RAPL1 WILD-TYPE" "IL1RAPL1 WILD-TYPE" 
        TCGA-44-2659         TCGA-44-2661         TCGA-44-2662 
"IL1RAPL1 WILD-TYPE" "IL1RAPL1 WILD-TYPE"   "IL1RAPL1 MUTATED" 
        TCGA-44-2665         TCGA-44-2666         TCGA-44-2668 
  "IL1RAPL1 MUTATED" "IL1RAPL1 WILD-TYPE" "IL1RAPL1 WILD-TYPE" 
        TCGA-44-3396         TCGA-44-3398         TCGA-44-3918 
"IL1RAPL1 WILD-TYPE" "IL1RAPL1 WILD-TYPE" "IL1RAPL1 WILD-TYPE" 
        TCGA-44-3919         TCGA-44-4112         TCGA-44-5643 
"IL1RAPL1 WILD-TYPE" "IL1RAPL1 WILD-TYPE" "IL1RAPL1 WILD-TYPE" 
        TCGA-44-5645         TCGA-44-6144         TCGA-44-6145 
"IL1RAPL1 WILD-TYPE" "IL1RAPL1 WILD-TYPE" "IL1RAPL1 WILD-TYPE" 
        TCGA-44-6146         TCGA-44-6147         TCGA-44-6148 
"IL1RAPL1 WILD-TYPE" "IL1RAPL1 WILD-TYPE" "IL1RAPL1 WILD-TYPE" 
        TCGA-44-6774         TCGA-44-6775         TCGA-44-6776 
  "IL1RAPL1 MUTATED" "IL1RAPL1 WILD-TYPE" "IL1RAPL1 WILD-TYPE" 
        TCGA-44-6777         TCGA-44-6778         TCGA-44-6779 
"IL1RAPL1 WILD-TYPE" "IL1RAPL1 WILD-TYPE" "IL1RAPL1 WILD-TYPE" 
        TCGA-49-4486         TCGA-49-4487         TCGA-49-4488 
"IL1RAPL1 WILD-TYPE" "IL1RAPL1 WILD-TYPE"   "IL1RAPL1 MUTATED" 
        TCGA-49-4490         TCGA-49-4494         TCGA-49-4501 
"IL1RAPL1 WILD-TYPE" "IL1RAPL1 WILD-TYPE" "IL1RAPL1 WILD-TYPE" 
        TCGA-49-4505         TCGA-49-4506         TCGA-49-4507 
  "IL1RAPL1 MUTATED" "IL1RAPL1 WILD-TYPE" "IL1RAPL1 WILD-TYPE" 
        TCGA-49-4510         TCGA-49-4512         TCGA-49-4514 
"IL1RAPL1 WILD-TYPE" "IL1RAPL1 WILD-TYPE" "IL1RAPL1 WILD-TYPE" 
        TCGA-49-6742         TCGA-49-6743         TCGA-49-6744 
"IL1RAPL1 WILD-TYPE" "IL1RAPL1 WILD-TYPE" "IL1RAPL1 WILD-TYPE" 
        TCGA-49-6745         TCGA-50-5044         TCGA-50-5045 
"IL1RAPL1 WILD-TYPE" "IL1RAPL1 WILD-TYPE" "IL1RAPL1 WILD-TYPE" 
        TCGA-50-5049         TCGA-50-5051         TCGA-50-5055 
"IL1RAPL1 WILD-TYPE" "IL1RAPL1 WILD-TYPE" "IL1RAPL1 WILD-TYPE" 
        TCGA-50-5066         TCGA-50-5068         TCGA-50-5072 
"IL1RAPL1 WILD-TYPE" "IL1RAPL1 WILD-TYPE" "IL1RAPL1 WILD-TYPE" 
        TCGA-50-5930         TCGA-50-5931         TCGA-50-5932 
"IL1RAPL1 WILD-TYPE"   "IL1RAPL1 MUTATED" "IL1RAPL1 WILD-TYPE" 
        TCGA-50-5933         TCGA-50-5935         TCGA-50-5936 
"IL1RAPL1 WILD-TYPE" "IL1RAPL1 WILD-TYPE" "IL1RAPL1 WILD-TYPE" 
        TCGA-50-5939         TCGA-50-5941         TCGA-50-5942 
"IL1RAPL1 WILD-TYPE" "IL1RAPL1 WILD-TYPE" "IL1RAPL1 WILD-TYPE" 
        TCGA-50-5944         TCGA-50-5946         TCGA-50-6590 
"IL1RAPL1 WILD-TYPE" "IL1RAPL1 WILD-TYPE" "IL1RAPL1 WILD-TYPE" 
        TCGA-50-6591         TCGA-50-6592         TCGA-50-6593 
"IL1RAPL1 WILD-TYPE" "IL1RAPL1 WILD-TYPE" "IL1RAPL1 WILD-TYPE" 
        TCGA-50-6594         TCGA-50-6595         TCGA-50-6597 
"IL1RAPL1 WILD-TYPE" "IL1RAPL1 WILD-TYPE" "IL1RAPL1 WILD-TYPE" 
        TCGA-55-1592         TCGA-55-1594         TCGA-55-1595 
"IL1RAPL1 WILD-TYPE" "IL1RAPL1 WILD-TYPE" "IL1RAPL1 WILD-TYPE" 
        TCGA-55-1596         TCGA-55-5899         TCGA-55-6543 
"IL1RAPL1 WILD-TYPE" "IL1RAPL1 WILD-TYPE" "IL1RAPL1 WILD-TYPE" 
        TCGA-55-6642         TCGA-55-6712         TCGA-64-1676 
"IL1RAPL1 WILD-TYPE" "IL1RAPL1 WILD-TYPE" "IL1RAPL1 WILD-TYPE" 
        TCGA-64-1677         TCGA-64-1678         TCGA-64-1680 
  "IL1RAPL1 MUTATED" "IL1RAPL1 WILD-TYPE" "IL1RAPL1 WILD-TYPE" 
        TCGA-64-5774         TCGA-64-5775         TCGA-64-5778 
"IL1RAPL1 WILD-TYPE" "IL1RAPL1 WILD-TYPE" "IL1RAPL1 WILD-TYPE" 
        TCGA-64-5779         TCGA-64-5781         TCGA-64-5815 
"IL1RAPL1 WILD-TYPE" "IL1RAPL1 WILD-TYPE" "IL1RAPL1 WILD-TYPE" 
        TCGA-67-3770         TCGA-67-3771         TCGA-67-3772 
"IL1RAPL1 WILD-TYPE" "IL1RAPL1 WILD-TYPE" "IL1RAPL1 WILD-TYPE" 
        TCGA-67-3773         TCGA-67-3774         TCGA-67-6215 
"IL1RAPL1 WILD-TYPE"   "IL1RAPL1 MUTATED" "IL1RAPL1 WILD-TYPE" 
        TCGA-67-6216         TCGA-67-6217         TCGA-71-6725 
"IL1RAPL1 WILD-TYPE" "IL1RAPL1 WILD-TYPE" "IL1RAPL1 WILD-TYPE" 
        TCGA-73-4658         TCGA-73-4659         TCGA-73-4662 
"IL1RAPL1 WILD-TYPE" "IL1RAPL1 WILD-TYPE" "IL1RAPL1 WILD-TYPE" 
        TCGA-73-4666         TCGA-73-4668         TCGA-73-4670 
"IL1RAPL1 WILD-TYPE" "IL1RAPL1 WILD-TYPE" "IL1RAPL1 WILD-TYPE" 
        TCGA-73-4675         TCGA-73-4676         TCGA-73-4677 
"IL1RAPL1 WILD-TYPE" "IL1RAPL1 WILD-TYPE" "IL1RAPL1 WILD-TYPE" 
        TCGA-91-6828         TCGA-91-6829         TCGA-91-6831 
"IL1RAPL1 WILD-TYPE" "IL1RAPL1 WILD-TYPE" "IL1RAPL1 WILD-TYPE" 
        TCGA-91-6835         TCGA-91-6836 
"IL1RAPL1 WILD-TYPE" "IL1RAPL1 WILD-TYPE" 
        TCGA-05-4249         TCGA-05-4250         TCGA-05-4382 
"IL1RAPL1 WILD-TYPE" "IL1RAPL1 WILD-TYPE" "IL1RAPL1 WILD-TYPE" 
        TCGA-05-4384         TCGA-05-4390         TCGA-05-4396 
"IL1RAPL1 WILD-TYPE" "IL1RAPL1 WILD-TYPE" "IL1RAPL1 WILD-TYPE" 
        TCGA-05-4397         TCGA-05-4398         TCGA-05-4402 
"IL1RAPL1 WILD-TYPE" "IL1RAPL1 WILD-TYPE" "IL1RAPL1 WILD-TYPE" 
        TCGA-05-4405         TCGA-05-4415         TCGA-05-4417 
"IL1RAPL1 WILD-TYPE" "IL1RAPL1 WILD-TYPE" "IL1RAPL1 WILD-TYPE" 
        TCGA-05-4418         TCGA-05-4420         TCGA-05-4424 
"IL1RAPL1 WILD-TYPE" "IL1RAPL1 WILD-TYPE" "IL1RAPL1 WILD-TYPE" 
        TCGA-05-4426         TCGA-05-4427         TCGA-05-4430 
"IL1RAPL1 WILD-TYPE" "IL1RAPL1 WILD-TYPE" "IL1RAPL1 WILD-TYPE" 
        TCGA-05-4432         TCGA-05-4433         TCGA-05-4434 
"IL1RAPL1 WILD-TYPE" "IL1RAPL1 WILD-TYPE" "IL1RAPL1 WILD-TYPE" 
        TCGA-05-5420         TCGA-05-5423         TCGA-05-5425 
"IL1RAPL1 WILD-TYPE" "IL1RAPL1 WILD-TYPE" "IL1RAPL1 WILD-TYPE" 
        TCGA-05-5429         TCGA-05-5715         TCGA-35-3615 
"IL1RAPL1 WILD-TYPE" "IL1RAPL1 WILD-TYPE" "IL1RAPL1 WILD-TYPE" 
        TCGA-35-4122         TCGA-35-4123         TCGA-35-5375 
"IL1RAPL1 WILD-TYPE" "IL1RAPL1 WILD-TYPE" "IL1RAPL1 WILD-TYPE" 
        TCGA-38-4625         TCGA-38-4626         TCGA-38-4627 
"IL1RAPL1 WILD-TYPE"   "IL1RAPL1 MUTATED" "IL1RAPL1 WILD-TYPE" 
        TCGA-38-4628         TCGA-38-4629         TCGA-38-4630 
"IL1RAPL1 WILD-TYPE" "IL1RAPL1 WILD-TYPE" "IL1RAPL1 WILD-TYPE" 
        TCGA-38-4631         TCGA-38-4632         TCGA-38-6178 
"IL1RAPL1 WILD-TYPE"   "IL1RAPL1 MUTATED" "IL1RAPL1 WILD-TYPE" 
        TCGA-44-2655         TCGA-44-2656         TCGA-44-2657 
"IL1RAPL1 WILD-TYPE" "IL1RAPL1 WILD-TYPE" "IL1RAPL1 WILD-TYPE" 
        TCGA-44-2659         TCGA-44-2661         TCGA-44-2662 
"IL1RAPL1 WILD-TYPE" "IL1RAPL1 WILD-TYPE"   "IL1RAPL1 MUTATED" 
        TCGA-44-2665         TCGA-44-2666         TCGA-44-2668 
  "IL1RAPL1 MUTATED" "IL1RAPL1 WILD-TYPE" "IL1RAPL1 WILD-TYPE" 
        TCGA-44-3396         TCGA-44-3398         TCGA-44-3918 
"IL1RAPL1 WILD-TYPE" "IL1RAPL1 WILD-TYPE" "IL1RAPL1 WILD-TYPE" 
        TCGA-44-3919         TCGA-44-4112         TCGA-44-5643 
"IL1RAPL1 WILD-TYPE" "IL1RAPL1 WILD-TYPE" "IL1RAPL1 WILD-TYPE" 
        TCGA-44-5645         TCGA-44-6144         TCGA-44-6145 
"IL1RAPL1 WILD-TYPE" "IL1RAPL1 WILD-TYPE" "IL1RAPL1 WILD-TYPE" 
        TCGA-44-6146         TCGA-44-6147         TCGA-44-6148 
"IL1RAPL1 WILD-TYPE" "IL1RAPL1 WILD-TYPE" "IL1RAPL1 WILD-TYPE" 
        TCGA-44-6774         TCGA-44-6775         TCGA-44-6776 
  "IL1RAPL1 MUTATED" "IL1RAPL1 WILD-TYPE" "IL1RAPL1 WILD-TYPE" 
        TCGA-44-6777         TCGA-44-6778         TCGA-44-6779 
"IL1RAPL1 WILD-TYPE" "IL1RAPL1 WILD-TYPE" "IL1RAPL1 WILD-TYPE" 
        TCGA-49-4486         TCGA-49-4487         TCGA-49-4488 
"IL1RAPL1 WILD-TYPE" "IL1RAPL1 WILD-TYPE"   "IL1RAPL1 MUTATED" 
        TCGA-49-4490         TCGA-49-4494         TCGA-49-4501 
"IL1RAPL1 WILD-TYPE" "IL1RAPL1 WILD-TYPE" "IL1RAPL1 WILD-TYPE" 
        TCGA-49-4505         TCGA-49-4506         TCGA-49-4507 
  "IL1RAPL1 MUTATED" "IL1RAPL1 WILD-TYPE" "IL1RAPL1 WILD-TYPE" 
        TCGA-49-4510         TCGA-49-4512         TCGA-49-4514 
"IL1RAPL1 WILD-TYPE" "IL1RAPL1 WILD-TYPE" "IL1RAPL1 WILD-TYPE" 
        TCGA-49-6742         TCGA-49-6743         TCGA-49-6744 
"IL1RAPL1 WILD-TYPE" "IL1RAPL1 WILD-TYPE" "IL1RAPL1 WILD-TYPE" 
        TCGA-49-6745         TCGA-50-5044         TCGA-50-5045 
"IL1RAPL1 WILD-TYPE" "IL1RAPL1 WILD-TYPE" "IL1RAPL1 WILD-TYPE" 
        TCGA-50-5049         TCGA-50-5051         TCGA-50-5055 
"IL1RAPL1 WILD-TYPE" "IL1RAPL1 WILD-TYPE" "IL1RAPL1 WILD-TYPE" 
        TCGA-50-5066         TCGA-50-5068         TCGA-50-5072 
"IL1RAPL1 WILD-TYPE" "IL1RAPL1 WILD-TYPE" "IL1RAPL1 WILD-TYPE" 
        TCGA-50-5930         TCGA-50-5931         TCGA-50-5932 
"IL1RAPL1 WILD-TYPE"   "IL1RAPL1 MUTATED" "IL1RAPL1 WILD-TYPE" 
        TCGA-50-5933         TCGA-50-5935         TCGA-50-5936 
"IL1RAPL1 WILD-TYPE" "IL1RAPL1 WILD-TYPE" "IL1RAPL1 WILD-TYPE" 
        TCGA-50-5939         TCGA-50-5941         TCGA-50-5942 
"IL1RAPL1 WILD-TYPE" "IL1RAPL1 WILD-TYPE" "IL1RAPL1 WILD-TYPE" 
        TCGA-50-5944         TCGA-50-5946         TCGA-50-6590 
"IL1RAPL1 WILD-TYPE" "IL1RAPL1 WILD-TYPE" "IL1RAPL1 WILD-TYPE" 
        TCGA-50-6591         TCGA-50-6592         TCGA-50-6593 
"IL1RAPL1 WILD-TYPE" "IL1RAPL1 WILD-TYPE" "IL1RAPL1 WILD-TYPE" 
        TCGA-50-6594         TCGA-50-6595         TCGA-50-6597 
"IL1RAPL1 WILD-TYPE" "IL1RAPL1 WILD-TYPE" "IL1RAPL1 WILD-TYPE" 
        TCGA-55-1592         TCGA-55-1594         TCGA-55-1595 
"IL1RAPL1 WILD-TYPE" "IL1RAPL1 WILD-TYPE" "IL1RAPL1 WILD-TYPE" 
        TCGA-55-1596         TCGA-55-5899         TCGA-55-6543 
"IL1RAPL1 WILD-TYPE" "IL1RAPL1 WILD-TYPE" "IL1RAPL1 WILD-TYPE" 
        TCGA-55-6642         TCGA-55-6712         TCGA-64-1676 
"IL1RAPL1 WILD-TYPE" "IL1RAPL1 WILD-TYPE" "IL1RAPL1 WILD-TYPE" 
        TCGA-64-1677         TCGA-64-1678         TCGA-64-1680 
  "IL1RAPL1 MUTATED" "IL1RAPL1 WILD-TYPE" "IL1RAPL1 WILD-TYPE" 
        TCGA-64-5774         TCGA-64-5775         TCGA-64-5778 
"IL1RAPL1 WILD-TYPE" "IL1RAPL1 WILD-TYPE" "IL1RAPL1 WILD-TYPE" 
        TCGA-64-5779         TCGA-64-5781         TCGA-64-5815 
"IL1RAPL1 WILD-TYPE" "IL1RAPL1 WILD-TYPE" "IL1RAPL1 WILD-TYPE" 
        TCGA-67-3770         TCGA-67-3771         TCGA-67-3772 
"IL1RAPL1 WILD-TYPE" "IL1RAPL1 WILD-TYPE" "IL1RAPL1 WILD-TYPE" 
        TCGA-67-3773         TCGA-67-3774         TCGA-67-6215 
"IL1RAPL1 WILD-TYPE"   "IL1RAPL1 MUTATED" "IL1RAPL1 WILD-TYPE" 
        TCGA-67-6216         TCGA-67-6217         TCGA-71-6725 
"IL1RAPL1 WILD-TYPE" "IL1RAPL1 WILD-TYPE" "IL1RAPL1 WILD-TYPE" 
        TCGA-73-4658         TCGA-73-4659         TCGA-73-4662 
"IL1RAPL1 WILD-TYPE" "IL1RAPL1 WILD-TYPE" "IL1RAPL1 WILD-TYPE" 
        TCGA-73-4666         TCGA-73-4668         TCGA-73-4670 
"IL1RAPL1 WILD-TYPE" "IL1RAPL1 WILD-TYPE" "IL1RAPL1 WILD-TYPE" 
        TCGA-73-4675         TCGA-73-4676         TCGA-73-4677 
"IL1RAPL1 WILD-TYPE" "IL1RAPL1 WILD-TYPE" "IL1RAPL1 WILD-TYPE" 
        TCGA-91-6828         TCGA-91-6829         TCGA-91-6831 
"IL1RAPL1 WILD-TYPE" "IL1RAPL1 WILD-TYPE" "IL1RAPL1 WILD-TYPE" 
        TCGA-91-6835         TCGA-91-6836 
"IL1RAPL1 WILD-TYPE" "IL1RAPL1 WILD-TYPE" 
[1] "hr=" "1.2"
D74V2, continuous
D74V3, binary
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  IL1RAPL1 MUTATED      8    3
  IL1RAPL1 WILD-TYPE   85   76
        clus
vv       IL1RAPL1 MUTATED IL1RAPL1 WILD-TYPE
  FEMALE                8                 85
  MALE                  3                 76
D74V4, continuous
[1] "Remove cluster labels:" "IL1RAPL1 MUTATED"      
clus
  IL1RAPL1 MUTATED IL1RAPL1 WILD-TYPE 
                 1                 11 
        TCGA-35-4122         TCGA-35-4123         TCGA-35-5375 
"IL1RAPL1 WILD-TYPE" "IL1RAPL1 WILD-TYPE" "IL1RAPL1 WILD-TYPE" 
        TCGA-64-5778         TCGA-71-6725         TCGA-73-4659 
"IL1RAPL1 WILD-TYPE" "IL1RAPL1 WILD-TYPE" "IL1RAPL1 WILD-TYPE" 
        TCGA-73-4662         TCGA-73-4666         TCGA-73-4668 
"IL1RAPL1 WILD-TYPE" "IL1RAPL1 WILD-TYPE" "IL1RAPL1 WILD-TYPE" 
        TCGA-73-4676         TCGA-75-5122 
"IL1RAPL1 WILD-TYPE" "IL1RAPL1 WILD-TYPE" 
D74V5, multiclass
D74V6, multiclass
    clus
vv   IL1RAPL1 MUTATED IL1RAPL1 WILD-TYPE
  T1                3                 38
  T2                8                100
  T3                0                 14
  T4                0                  8
D74V7, multiclass
       clus
vv      IL1RAPL1 MUTATED IL1RAPL1 WILD-TYPE
  N0                   5                 90
  N1                   4                 33
  N2+N3                2                 33
D74V8, multiclass
    clus
vv   IL1RAPL1 MUTATED IL1RAPL1 WILD-TYPE
  M0                9                128
  M1                1                  8
  MX                1                 21
D74V9, multiclass
     clus
vv    IL1RAPL1 MUTATED IL1RAPL1 WILD-TYPE
  I                  4                 84
  II                 4                 29
  III                2                 37
  IV                 1                  8
D74V10, binary
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  IL1RAPL1 MUTATED      0   11
  IL1RAPL1 WILD-TYPE   16  145
     clus
vv    IL1RAPL1 MUTATED IL1RAPL1 WILD-TYPE
  NO                 0                 16
  YES               11                145
D74V11, continuous
D74V12, continuous
D74V13, multiclass
                                             clus
vv                                            IL1RAPL1 MUTATED
  CURRENT REFORMED SMOKER FOR < OR = 15 YEARS                2
  CURRENT REFORMED SMOKER FOR > 15 YEARS                     4
  CURRENT SMOKER                                             3
  LIFELONG NON-SMOKER                                        1
                                             clus
vv                                            IL1RAPL1 WILD-TYPE
  CURRENT REFORMED SMOKER FOR < OR = 15 YEARS                 60
  CURRENT REFORMED SMOKER FOR > 15 YEARS                      42
  CURRENT SMOKER                                              25
  LIFELONG NON-SMOKER                                         23
D74V14, continuous

Clustering(75) Variable = SLC35F1 MUTATION ANALYSIS
D75V1, survival
                   sevent
clus2                0  1
  SLC35F1 MUTATED    6  2
  SLC35F1 WILD-TYPE 93 48
  SLC35F1 MUTATED SLC35F1 WILD-TYPE 
                8               141 
  SLC35F1 MUTATED SLC35F1 WILD-TYPE 
                2                48 
$`SLC35F1 MUTATED`
TCGA-05-4382 TCGA-05-4396 TCGA-05-4397 TCGA-05-4432 TCGA-35-4122 TCGA-50-5066 
       19.92         9.96        24.03        25.02         7.36         9.76 
TCGA-55-5899 TCGA-91-6836 
        2.86         0.36 

$`SLC35F1 WILD-TYPE`
TCGA-05-4249 TCGA-05-4250 TCGA-05-4384 TCGA-05-4390 TCGA-05-4398 TCGA-05-4402 
       38.07         3.98        14.01        37.02        47.05         8.02 
TCGA-05-4405 TCGA-05-4415 TCGA-05-4417 TCGA-05-4418 TCGA-05-4420 TCGA-05-4424 
       20.05         2.96        14.93         8.98        29.95        30.02 
TCGA-05-4426 TCGA-05-4427 TCGA-05-4430 TCGA-05-4433 TCGA-05-4434 TCGA-05-5420 
       26.01        26.01        25.02        24.00        15.02         1.02 
TCGA-05-5423 TCGA-05-5425 TCGA-05-5429 TCGA-05-5715 TCGA-35-3615 TCGA-35-4123 
        4.96         2.96         0.99         2.04         0.46         5.95 
TCGA-35-5375 TCGA-38-4625 TCGA-38-4626 TCGA-38-4627 TCGA-38-4628 TCGA-38-4629 
        8.68        47.61        85.32        37.71        49.02        28.37 
TCGA-38-4630 TCGA-38-4631 TCGA-38-4632 TCGA-38-6178 TCGA-44-2655 TCGA-44-2656 
       35.28        11.64        44.61         5.19        18.87        19.10 
TCGA-44-2657 TCGA-44-2659 TCGA-44-2661 TCGA-44-2662 TCGA-44-2665 TCGA-44-2666 
       13.15        17.39         3.39        15.78        13.15         3.19 
TCGA-44-2668 TCGA-44-3396 TCGA-44-3398 TCGA-44-3918 TCGA-44-3919 TCGA-44-4112 
        8.09        10.22         8.32         6.44         6.21         4.60 
TCGA-44-5643 TCGA-44-5645 TCGA-44-6144 TCGA-44-6145 TCGA-44-6146 TCGA-44-6147 
        3.48         6.84         0.30         3.35         9.93         7.76 
TCGA-44-6148 TCGA-44-6774 TCGA-44-6775 TCGA-44-6776 TCGA-44-6777 TCGA-44-6778 
        3.12         5.42         2.70        63.72        32.45        36.49 
TCGA-44-6779 TCGA-49-4486 TCGA-49-4487 TCGA-49-4488 TCGA-49-4490 TCGA-49-4494 
       16.41        76.21        28.11        28.57        12.66        35.54 
TCGA-49-4501 TCGA-49-4505 TCGA-49-4506 TCGA-49-4507 TCGA-49-4510 TCGA-49-4512 
       46.72        14.07        32.84         8.81        29.46        29.75 
TCGA-49-4514 TCGA-49-6742 TCGA-49-6743 TCGA-49-6744 TCGA-49-6745 TCGA-50-5044 
       43.20        15.02        12.13        12.99         4.93        20.48 
TCGA-50-5045 TCGA-50-5049 TCGA-50-5051 TCGA-50-5055 TCGA-50-5068 TCGA-50-5072 
       71.47        48.82        14.96        25.81        49.28         8.05 
TCGA-50-5930 TCGA-50-5931 TCGA-50-5932 TCGA-50-5933 TCGA-50-5935 TCGA-50-5936 
        9.27         8.78        35.87        77.88        21.47         8.45 
TCGA-50-5939 TCGA-50-5941 TCGA-50-5942 TCGA-50-5944 TCGA-50-5946 TCGA-50-6590 
       15.12         9.37         4.44        12.26        11.47        42.31 
TCGA-50-6591 TCGA-50-6592 TCGA-50-6593 TCGA-50-6594 TCGA-50-6595 TCGA-50-6597 
        3.88        25.51        11.05        12.16         6.21        33.37 
TCGA-55-1592 TCGA-55-1594 TCGA-55-1595 TCGA-55-1596 TCGA-55-6543 TCGA-55-6642 
       23.05        38.73        48.62        45.17         0.07        32.61 
TCGA-55-6712 TCGA-64-1676 TCGA-64-1677 TCGA-64-1678 TCGA-64-1680 TCGA-64-5774 
        0.79        56.81        20.65        39.09        37.02        83.84 
TCGA-64-5775 TCGA-64-5778 TCGA-64-5779 TCGA-64-5781 TCGA-64-5815 TCGA-67-3770 
        0.10        30.44        16.67        39.52         7.33         0.99 
TCGA-67-3771 TCGA-67-3772 TCGA-67-3773 TCGA-67-3774 TCGA-67-6215 TCGA-67-6216 
        1.97         0.59         2.04         0.59         0.89         0.69 
TCGA-67-6217 TCGA-71-6725 TCGA-73-4658 TCGA-73-4659 TCGA-73-4662 TCGA-73-4666 
       13.87         2.01        52.57        23.38        29.95        20.28 
TCGA-73-4668 TCGA-73-4670 TCGA-73-4675 TCGA-73-4676 TCGA-73-4677 TCGA-91-6828 
       15.35         0.46         1.32         4.01         1.25         1.22 
TCGA-91-6829 TCGA-91-6831 TCGA-91-6835 
       41.33         1.28         1.15 

  SLC35F1 MUTATED SLC35F1 WILD-TYPE 
             0.36              0.07 
  SLC35F1 MUTATED SLC35F1 WILD-TYPE 
            25.02             85.32 
  SLC35F1 MUTATED SLC35F1 WILD-TYPE 
             9.86             14.01 
[1] "0.4 - 25.0 (9.9)"  "0.1 - 85.3 (14.0)"
       TCGA-05-4249        TCGA-05-4250        TCGA-05-4382        TCGA-05-4384 
"SLC35F1 WILD-TYPE" "SLC35F1 WILD-TYPE"   "SLC35F1 MUTATED" "SLC35F1 WILD-TYPE" 
       TCGA-05-4390        TCGA-05-4396        TCGA-05-4397        TCGA-05-4398 
"SLC35F1 WILD-TYPE"   "SLC35F1 MUTATED"   "SLC35F1 MUTATED" "SLC35F1 WILD-TYPE" 
       TCGA-05-4402        TCGA-05-4405        TCGA-05-4415        TCGA-05-4417 
"SLC35F1 WILD-TYPE" "SLC35F1 WILD-TYPE" "SLC35F1 WILD-TYPE" "SLC35F1 WILD-TYPE" 
       TCGA-05-4418        TCGA-05-4420        TCGA-05-4424        TCGA-05-4426 
"SLC35F1 WILD-TYPE" "SLC35F1 WILD-TYPE" "SLC35F1 WILD-TYPE" "SLC35F1 WILD-TYPE" 
       TCGA-05-4427        TCGA-05-4430        TCGA-05-4432        TCGA-05-4433 
"SLC35F1 WILD-TYPE" "SLC35F1 WILD-TYPE"   "SLC35F1 MUTATED" "SLC35F1 WILD-TYPE" 
       TCGA-05-4434        TCGA-05-5420        TCGA-05-5423        TCGA-05-5425 
"SLC35F1 WILD-TYPE" "SLC35F1 WILD-TYPE" "SLC35F1 WILD-TYPE" "SLC35F1 WILD-TYPE" 
       TCGA-05-5429        TCGA-05-5715        TCGA-35-3615        TCGA-35-4122 
"SLC35F1 WILD-TYPE" "SLC35F1 WILD-TYPE" "SLC35F1 WILD-TYPE"   "SLC35F1 MUTATED" 
       TCGA-35-4123        TCGA-35-5375        TCGA-38-4625        TCGA-38-4626 
"SLC35F1 WILD-TYPE" "SLC35F1 WILD-TYPE" "SLC35F1 WILD-TYPE" "SLC35F1 WILD-TYPE" 
       TCGA-38-4627        TCGA-38-4628        TCGA-38-4629        TCGA-38-4630 
"SLC35F1 WILD-TYPE" "SLC35F1 WILD-TYPE" "SLC35F1 WILD-TYPE" "SLC35F1 WILD-TYPE" 
       TCGA-38-4631        TCGA-38-4632        TCGA-38-6178        TCGA-44-2655 
"SLC35F1 WILD-TYPE" "SLC35F1 WILD-TYPE" "SLC35F1 WILD-TYPE" "SLC35F1 WILD-TYPE" 
       TCGA-44-2656        TCGA-44-2657        TCGA-44-2659        TCGA-44-2661 
"SLC35F1 WILD-TYPE" "SLC35F1 WILD-TYPE" "SLC35F1 WILD-TYPE" "SLC35F1 WILD-TYPE" 
       TCGA-44-2662        TCGA-44-2665        TCGA-44-2666        TCGA-44-2668 
"SLC35F1 WILD-TYPE" "SLC35F1 WILD-TYPE" "SLC35F1 WILD-TYPE" "SLC35F1 WILD-TYPE" 
       TCGA-44-3396        TCGA-44-3398        TCGA-44-3918        TCGA-44-3919 
"SLC35F1 WILD-TYPE" "SLC35F1 WILD-TYPE" "SLC35F1 WILD-TYPE" "SLC35F1 WILD-TYPE" 
       TCGA-44-4112        TCGA-44-5643        TCGA-44-5645        TCGA-44-6144 
"SLC35F1 WILD-TYPE" "SLC35F1 WILD-TYPE" "SLC35F1 WILD-TYPE" "SLC35F1 WILD-TYPE" 
       TCGA-44-6145        TCGA-44-6146        TCGA-44-6147        TCGA-44-6148 
"SLC35F1 WILD-TYPE" "SLC35F1 WILD-TYPE" "SLC35F1 WILD-TYPE" "SLC35F1 WILD-TYPE" 
       TCGA-44-6774        TCGA-44-6775        TCGA-44-6776        TCGA-44-6777 
"SLC35F1 WILD-TYPE" "SLC35F1 WILD-TYPE" "SLC35F1 WILD-TYPE" "SLC35F1 WILD-TYPE" 
       TCGA-44-6778        TCGA-44-6779        TCGA-49-4486        TCGA-49-4487 
"SLC35F1 WILD-TYPE" "SLC35F1 WILD-TYPE" "SLC35F1 WILD-TYPE" "SLC35F1 WILD-TYPE" 
       TCGA-49-4488        TCGA-49-4490        TCGA-49-4494        TCGA-49-4501 
"SLC35F1 WILD-TYPE" "SLC35F1 WILD-TYPE" "SLC35F1 WILD-TYPE" "SLC35F1 WILD-TYPE" 
       TCGA-49-4505        TCGA-49-4506        TCGA-49-4507        TCGA-49-4510 
"SLC35F1 WILD-TYPE" "SLC35F1 WILD-TYPE" "SLC35F1 WILD-TYPE" "SLC35F1 WILD-TYPE" 
       TCGA-49-4512        TCGA-49-4514        TCGA-49-6742        TCGA-49-6743 
"SLC35F1 WILD-TYPE" "SLC35F1 WILD-TYPE" "SLC35F1 WILD-TYPE" "SLC35F1 WILD-TYPE" 
       TCGA-49-6744        TCGA-49-6745        TCGA-50-5044        TCGA-50-5045 
"SLC35F1 WILD-TYPE" "SLC35F1 WILD-TYPE" "SLC35F1 WILD-TYPE" "SLC35F1 WILD-TYPE" 
       TCGA-50-5049        TCGA-50-5051        TCGA-50-5055        TCGA-50-5066 
"SLC35F1 WILD-TYPE" "SLC35F1 WILD-TYPE" "SLC35F1 WILD-TYPE"   "SLC35F1 MUTATED" 
       TCGA-50-5068        TCGA-50-5072        TCGA-50-5930        TCGA-50-5931 
"SLC35F1 WILD-TYPE" "SLC35F1 WILD-TYPE" "SLC35F1 WILD-TYPE" "SLC35F1 WILD-TYPE" 
       TCGA-50-5932        TCGA-50-5933        TCGA-50-5935        TCGA-50-5936 
"SLC35F1 WILD-TYPE" "SLC35F1 WILD-TYPE" "SLC35F1 WILD-TYPE" "SLC35F1 WILD-TYPE" 
       TCGA-50-5939        TCGA-50-5941        TCGA-50-5942        TCGA-50-5944 
"SLC35F1 WILD-TYPE" "SLC35F1 WILD-TYPE" "SLC35F1 WILD-TYPE" "SLC35F1 WILD-TYPE" 
       TCGA-50-5946        TCGA-50-6590        TCGA-50-6591        TCGA-50-6592 
"SLC35F1 WILD-TYPE" "SLC35F1 WILD-TYPE" "SLC35F1 WILD-TYPE" "SLC35F1 WILD-TYPE" 
       TCGA-50-6593        TCGA-50-6594        TCGA-50-6595        TCGA-50-6597 
"SLC35F1 WILD-TYPE" "SLC35F1 WILD-TYPE" "SLC35F1 WILD-TYPE" "SLC35F1 WILD-TYPE" 
       TCGA-55-1592        TCGA-55-1594        TCGA-55-1595        TCGA-55-1596 
"SLC35F1 WILD-TYPE" "SLC35F1 WILD-TYPE" "SLC35F1 WILD-TYPE" "SLC35F1 WILD-TYPE" 
       TCGA-55-5899        TCGA-55-6543        TCGA-55-6642        TCGA-55-6712 
  "SLC35F1 MUTATED" "SLC35F1 WILD-TYPE" "SLC35F1 WILD-TYPE" "SLC35F1 WILD-TYPE" 
       TCGA-64-1676        TCGA-64-1677        TCGA-64-1678        TCGA-64-1680 
"SLC35F1 WILD-TYPE" "SLC35F1 WILD-TYPE" "SLC35F1 WILD-TYPE" "SLC35F1 WILD-TYPE" 
       TCGA-64-5774        TCGA-64-5775        TCGA-64-5778        TCGA-64-5779 
"SLC35F1 WILD-TYPE" "SLC35F1 WILD-TYPE" "SLC35F1 WILD-TYPE" "SLC35F1 WILD-TYPE" 
       TCGA-64-5781        TCGA-64-5815        TCGA-67-3770        TCGA-67-3771 
"SLC35F1 WILD-TYPE" "SLC35F1 WILD-TYPE" "SLC35F1 WILD-TYPE" "SLC35F1 WILD-TYPE" 
       TCGA-67-3772        TCGA-67-3773        TCGA-67-3774        TCGA-67-6215 
"SLC35F1 WILD-TYPE" "SLC35F1 WILD-TYPE" "SLC35F1 WILD-TYPE" "SLC35F1 WILD-TYPE" 
       TCGA-67-6216        TCGA-67-6217        TCGA-71-6725        TCGA-73-4658 
"SLC35F1 WILD-TYPE" "SLC35F1 WILD-TYPE" "SLC35F1 WILD-TYPE" "SLC35F1 WILD-TYPE" 
       TCGA-73-4659        TCGA-73-4662        TCGA-73-4666        TCGA-73-4668 
"SLC35F1 WILD-TYPE" "SLC35F1 WILD-TYPE" "SLC35F1 WILD-TYPE" "SLC35F1 WILD-TYPE" 
       TCGA-73-4670        TCGA-73-4675        TCGA-73-4676        TCGA-73-4677 
"SLC35F1 WILD-TYPE" "SLC35F1 WILD-TYPE" "SLC35F1 WILD-TYPE" "SLC35F1 WILD-TYPE" 
       TCGA-91-6828        TCGA-91-6829        TCGA-91-6831        TCGA-91-6835 
"SLC35F1 WILD-TYPE" "SLC35F1 WILD-TYPE" "SLC35F1 WILD-TYPE" "SLC35F1 WILD-TYPE" 
       TCGA-91-6836 
  "SLC35F1 MUTATED" 
       TCGA-05-4249        TCGA-05-4250        TCGA-05-4382        TCGA-05-4384 
"SLC35F1 WILD-TYPE" "SLC35F1 WILD-TYPE"   "SLC35F1 MUTATED" "SLC35F1 WILD-TYPE" 
       TCGA-05-4390        TCGA-05-4396        TCGA-05-4397        TCGA-05-4398 
"SLC35F1 WILD-TYPE"   "SLC35F1 MUTATED"   "SLC35F1 MUTATED" "SLC35F1 WILD-TYPE" 
       TCGA-05-4402        TCGA-05-4405        TCGA-05-4415        TCGA-05-4417 
"SLC35F1 WILD-TYPE" "SLC35F1 WILD-TYPE" "SLC35F1 WILD-TYPE" "SLC35F1 WILD-TYPE" 
       TCGA-05-4418        TCGA-05-4420        TCGA-05-4424        TCGA-05-4426 
"SLC35F1 WILD-TYPE" "SLC35F1 WILD-TYPE" "SLC35F1 WILD-TYPE" "SLC35F1 WILD-TYPE" 
       TCGA-05-4427        TCGA-05-4430        TCGA-05-4432        TCGA-05-4433 
"SLC35F1 WILD-TYPE" "SLC35F1 WILD-TYPE"   "SLC35F1 MUTATED" "SLC35F1 WILD-TYPE" 
       TCGA-05-4434        TCGA-05-5420        TCGA-05-5423        TCGA-05-5425 
"SLC35F1 WILD-TYPE" "SLC35F1 WILD-TYPE" "SLC35F1 WILD-TYPE" "SLC35F1 WILD-TYPE" 
       TCGA-05-5429        TCGA-05-5715        TCGA-35-3615        TCGA-35-4122 
"SLC35F1 WILD-TYPE" "SLC35F1 WILD-TYPE" "SLC35F1 WILD-TYPE"   "SLC35F1 MUTATED" 
       TCGA-35-4123        TCGA-35-5375        TCGA-38-4625        TCGA-38-4626 
"SLC35F1 WILD-TYPE" "SLC35F1 WILD-TYPE" "SLC35F1 WILD-TYPE" "SLC35F1 WILD-TYPE" 
       TCGA-38-4627        TCGA-38-4628        TCGA-38-4629        TCGA-38-4630 
"SLC35F1 WILD-TYPE" "SLC35F1 WILD-TYPE" "SLC35F1 WILD-TYPE" "SLC35F1 WILD-TYPE" 
       TCGA-38-4631        TCGA-38-4632        TCGA-38-6178        TCGA-44-2655 
"SLC35F1 WILD-TYPE" "SLC35F1 WILD-TYPE" "SLC35F1 WILD-TYPE" "SLC35F1 WILD-TYPE" 
       TCGA-44-2656        TCGA-44-2657        TCGA-44-2659        TCGA-44-2661 
"SLC35F1 WILD-TYPE" "SLC35F1 WILD-TYPE" "SLC35F1 WILD-TYPE" "SLC35F1 WILD-TYPE" 
       TCGA-44-2662        TCGA-44-2665        TCGA-44-2666        TCGA-44-2668 
"SLC35F1 WILD-TYPE" "SLC35F1 WILD-TYPE" "SLC35F1 WILD-TYPE" "SLC35F1 WILD-TYPE" 
       TCGA-44-3396        TCGA-44-3398        TCGA-44-3918        TCGA-44-3919 
"SLC35F1 WILD-TYPE" "SLC35F1 WILD-TYPE" "SLC35F1 WILD-TYPE" "SLC35F1 WILD-TYPE" 
       TCGA-44-4112        TCGA-44-5643        TCGA-44-5645        TCGA-44-6144 
"SLC35F1 WILD-TYPE" "SLC35F1 WILD-TYPE" "SLC35F1 WILD-TYPE" "SLC35F1 WILD-TYPE" 
       TCGA-44-6145        TCGA-44-6146        TCGA-44-6147        TCGA-44-6148 
"SLC35F1 WILD-TYPE" "SLC35F1 WILD-TYPE" "SLC35F1 WILD-TYPE" "SLC35F1 WILD-TYPE" 
       TCGA-44-6774        TCGA-44-6775        TCGA-44-6776        TCGA-44-6777 
"SLC35F1 WILD-TYPE" "SLC35F1 WILD-TYPE" "SLC35F1 WILD-TYPE" "SLC35F1 WILD-TYPE" 
       TCGA-44-6778        TCGA-44-6779        TCGA-49-4486        TCGA-49-4487 
"SLC35F1 WILD-TYPE" "SLC35F1 WILD-TYPE" "SLC35F1 WILD-TYPE" "SLC35F1 WILD-TYPE" 
       TCGA-49-4488        TCGA-49-4490        TCGA-49-4494        TCGA-49-4501 
"SLC35F1 WILD-TYPE" "SLC35F1 WILD-TYPE" "SLC35F1 WILD-TYPE" "SLC35F1 WILD-TYPE" 
       TCGA-49-4505        TCGA-49-4506        TCGA-49-4507        TCGA-49-4510 
"SLC35F1 WILD-TYPE" "SLC35F1 WILD-TYPE" "SLC35F1 WILD-TYPE" "SLC35F1 WILD-TYPE" 
       TCGA-49-4512        TCGA-49-4514        TCGA-49-6742        TCGA-49-6743 
"SLC35F1 WILD-TYPE" "SLC35F1 WILD-TYPE" "SLC35F1 WILD-TYPE" "SLC35F1 WILD-TYPE" 
       TCGA-49-6744        TCGA-49-6745        TCGA-50-5044        TCGA-50-5045 
"SLC35F1 WILD-TYPE" "SLC35F1 WILD-TYPE" "SLC35F1 WILD-TYPE" "SLC35F1 WILD-TYPE" 
       TCGA-50-5049        TCGA-50-5051        TCGA-50-5055        TCGA-50-5066 
"SLC35F1 WILD-TYPE" "SLC35F1 WILD-TYPE" "SLC35F1 WILD-TYPE"   "SLC35F1 MUTATED" 
       TCGA-50-5068        TCGA-50-5072        TCGA-50-5930        TCGA-50-5931 
"SLC35F1 WILD-TYPE" "SLC35F1 WILD-TYPE" "SLC35F1 WILD-TYPE" "SLC35F1 WILD-TYPE" 
       TCGA-50-5932        TCGA-50-5933        TCGA-50-5935        TCGA-50-5936 
"SLC35F1 WILD-TYPE" "SLC35F1 WILD-TYPE" "SLC35F1 WILD-TYPE" "SLC35F1 WILD-TYPE" 
       TCGA-50-5939        TCGA-50-5941        TCGA-50-5942        TCGA-50-5944 
"SLC35F1 WILD-TYPE" "SLC35F1 WILD-TYPE" "SLC35F1 WILD-TYPE" "SLC35F1 WILD-TYPE" 
       TCGA-50-5946        TCGA-50-6590        TCGA-50-6591        TCGA-50-6592 
"SLC35F1 WILD-TYPE" "SLC35F1 WILD-TYPE" "SLC35F1 WILD-TYPE" "SLC35F1 WILD-TYPE" 
       TCGA-50-6593        TCGA-50-6594        TCGA-50-6595        TCGA-50-6597 
"SLC35F1 WILD-TYPE" "SLC35F1 WILD-TYPE" "SLC35F1 WILD-TYPE" "SLC35F1 WILD-TYPE" 
       TCGA-55-1592        TCGA-55-1594        TCGA-55-1595        TCGA-55-1596 
"SLC35F1 WILD-TYPE" "SLC35F1 WILD-TYPE" "SLC35F1 WILD-TYPE" "SLC35F1 WILD-TYPE" 
       TCGA-55-5899        TCGA-55-6543        TCGA-55-6642        TCGA-55-6712 
  "SLC35F1 MUTATED" "SLC35F1 WILD-TYPE" "SLC35F1 WILD-TYPE" "SLC35F1 WILD-TYPE" 
       TCGA-64-1676        TCGA-64-1677        TCGA-64-1678        TCGA-64-1680 
"SLC35F1 WILD-TYPE" "SLC35F1 WILD-TYPE" "SLC35F1 WILD-TYPE" "SLC35F1 WILD-TYPE" 
       TCGA-64-5774        TCGA-64-5775        TCGA-64-5778        TCGA-64-5779 
"SLC35F1 WILD-TYPE" "SLC35F1 WILD-TYPE" "SLC35F1 WILD-TYPE" "SLC35F1 WILD-TYPE" 
       TCGA-64-5781        TCGA-64-5815        TCGA-67-3770        TCGA-67-3771 
"SLC35F1 WILD-TYPE" "SLC35F1 WILD-TYPE" "SLC35F1 WILD-TYPE" "SLC35F1 WILD-TYPE" 
       TCGA-67-3772        TCGA-67-3773        TCGA-67-3774        TCGA-67-6215 
"SLC35F1 WILD-TYPE" "SLC35F1 WILD-TYPE" "SLC35F1 WILD-TYPE" "SLC35F1 WILD-TYPE" 
       TCGA-67-6216        TCGA-67-6217        TCGA-71-6725        TCGA-73-4658 
"SLC35F1 WILD-TYPE" "SLC35F1 WILD-TYPE" "SLC35F1 WILD-TYPE" "SLC35F1 WILD-TYPE" 
       TCGA-73-4659        TCGA-73-4662        TCGA-73-4666        TCGA-73-4668 
"SLC35F1 WILD-TYPE" "SLC35F1 WILD-TYPE" "SLC35F1 WILD-TYPE" "SLC35F1 WILD-TYPE" 
       TCGA-73-4670        TCGA-73-4675        TCGA-73-4676        TCGA-73-4677 
"SLC35F1 WILD-TYPE" "SLC35F1 WILD-TYPE" "SLC35F1 WILD-TYPE" "SLC35F1 WILD-TYPE" 
       TCGA-91-6828        TCGA-91-6829        TCGA-91-6831        TCGA-91-6835 
"SLC35F1 WILD-TYPE" "SLC35F1 WILD-TYPE" "SLC35F1 WILD-TYPE" "SLC35F1 WILD-TYPE" 
       TCGA-91-6836 
  "SLC35F1 MUTATED" 
       TCGA-05-4249        TCGA-05-4250        TCGA-05-4382        TCGA-05-4384 
"SLC35F1 WILD-TYPE" "SLC35F1 WILD-TYPE"   "SLC35F1 MUTATED" "SLC35F1 WILD-TYPE" 
       TCGA-05-4390        TCGA-05-4396        TCGA-05-4397        TCGA-05-4398 
"SLC35F1 WILD-TYPE"   "SLC35F1 MUTATED"   "SLC35F1 MUTATED" "SLC35F1 WILD-TYPE" 
       TCGA-05-4402        TCGA-05-4405        TCGA-05-4415        TCGA-05-4417 
"SLC35F1 WILD-TYPE" "SLC35F1 WILD-TYPE" "SLC35F1 WILD-TYPE" "SLC35F1 WILD-TYPE" 
       TCGA-05-4418        TCGA-05-4420        TCGA-05-4424        TCGA-05-4426 
"SLC35F1 WILD-TYPE" "SLC35F1 WILD-TYPE" "SLC35F1 WILD-TYPE" "SLC35F1 WILD-TYPE" 
       TCGA-05-4427        TCGA-05-4430        TCGA-05-4432        TCGA-05-4433 
"SLC35F1 WILD-TYPE" "SLC35F1 WILD-TYPE"   "SLC35F1 MUTATED" "SLC35F1 WILD-TYPE" 
       TCGA-05-4434        TCGA-05-5420        TCGA-05-5423        TCGA-05-5425 
"SLC35F1 WILD-TYPE" "SLC35F1 WILD-TYPE" "SLC35F1 WILD-TYPE" "SLC35F1 WILD-TYPE" 
       TCGA-05-5429        TCGA-05-5715        TCGA-35-3615        TCGA-35-4122 
"SLC35F1 WILD-TYPE" "SLC35F1 WILD-TYPE" "SLC35F1 WILD-TYPE"   "SLC35F1 MUTATED" 
       TCGA-35-4123        TCGA-35-5375        TCGA-38-4625        TCGA-38-4626 
"SLC35F1 WILD-TYPE" "SLC35F1 WILD-TYPE" "SLC35F1 WILD-TYPE" "SLC35F1 WILD-TYPE" 
       TCGA-38-4627        TCGA-38-4628        TCGA-38-4629        TCGA-38-4630 
"SLC35F1 WILD-TYPE" "SLC35F1 WILD-TYPE" "SLC35F1 WILD-TYPE" "SLC35F1 WILD-TYPE" 
       TCGA-38-4631        TCGA-38-4632        TCGA-38-6178        TCGA-44-2655 
"SLC35F1 WILD-TYPE" "SLC35F1 WILD-TYPE" "SLC35F1 WILD-TYPE" "SLC35F1 WILD-TYPE" 
       TCGA-44-2656        TCGA-44-2657        TCGA-44-2659        TCGA-44-2661 
"SLC35F1 WILD-TYPE" "SLC35F1 WILD-TYPE" "SLC35F1 WILD-TYPE" "SLC35F1 WILD-TYPE" 
       TCGA-44-2662        TCGA-44-2665        TCGA-44-2666        TCGA-44-2668 
"SLC35F1 WILD-TYPE" "SLC35F1 WILD-TYPE" "SLC35F1 WILD-TYPE" "SLC35F1 WILD-TYPE" 
       TCGA-44-3396        TCGA-44-3398        TCGA-44-3918        TCGA-44-3919 
"SLC35F1 WILD-TYPE" "SLC35F1 WILD-TYPE" "SLC35F1 WILD-TYPE" "SLC35F1 WILD-TYPE" 
       TCGA-44-4112        TCGA-44-5643        TCGA-44-5645        TCGA-44-6144 
"SLC35F1 WILD-TYPE" "SLC35F1 WILD-TYPE" "SLC35F1 WILD-TYPE" "SLC35F1 WILD-TYPE" 
       TCGA-44-6145        TCGA-44-6146        TCGA-44-6147        TCGA-44-6148 
"SLC35F1 WILD-TYPE" "SLC35F1 WILD-TYPE" "SLC35F1 WILD-TYPE" "SLC35F1 WILD-TYPE" 
       TCGA-44-6774        TCGA-44-6775        TCGA-44-6776        TCGA-44-6777 
"SLC35F1 WILD-TYPE" "SLC35F1 WILD-TYPE" "SLC35F1 WILD-TYPE" "SLC35F1 WILD-TYPE" 
       TCGA-44-6778        TCGA-44-6779        TCGA-49-4486        TCGA-49-4487 
"SLC35F1 WILD-TYPE" "SLC35F1 WILD-TYPE" "SLC35F1 WILD-TYPE" "SLC35F1 WILD-TYPE" 
       TCGA-49-4488        TCGA-49-4490        TCGA-49-4494        TCGA-49-4501 
"SLC35F1 WILD-TYPE" "SLC35F1 WILD-TYPE" "SLC35F1 WILD-TYPE" "SLC35F1 WILD-TYPE" 
       TCGA-49-4505        TCGA-49-4506        TCGA-49-4507        TCGA-49-4510 
"SLC35F1 WILD-TYPE" "SLC35F1 WILD-TYPE" "SLC35F1 WILD-TYPE" "SLC35F1 WILD-TYPE" 
       TCGA-49-4512        TCGA-49-4514        TCGA-49-6742        TCGA-49-6743 
"SLC35F1 WILD-TYPE" "SLC35F1 WILD-TYPE" "SLC35F1 WILD-TYPE" "SLC35F1 WILD-TYPE" 
       TCGA-49-6744        TCGA-49-6745        TCGA-50-5044        TCGA-50-5045 
"SLC35F1 WILD-TYPE" "SLC35F1 WILD-TYPE" "SLC35F1 WILD-TYPE" "SLC35F1 WILD-TYPE" 
       TCGA-50-5049        TCGA-50-5051        TCGA-50-5055        TCGA-50-5066 
"SLC35F1 WILD-TYPE" "SLC35F1 WILD-TYPE" "SLC35F1 WILD-TYPE"   "SLC35F1 MUTATED" 
       TCGA-50-5068        TCGA-50-5072        TCGA-50-5930        TCGA-50-5931 
"SLC35F1 WILD-TYPE" "SLC35F1 WILD-TYPE" "SLC35F1 WILD-TYPE" "SLC35F1 WILD-TYPE" 
       TCGA-50-5932        TCGA-50-5933        TCGA-50-5935        TCGA-50-5936 
"SLC35F1 WILD-TYPE" "SLC35F1 WILD-TYPE" "SLC35F1 WILD-TYPE" "SLC35F1 WILD-TYPE" 
       TCGA-50-5939        TCGA-50-5941        TCGA-50-5942        TCGA-50-5944 
"SLC35F1 WILD-TYPE" "SLC35F1 WILD-TYPE" "SLC35F1 WILD-TYPE" "SLC35F1 WILD-TYPE" 
       TCGA-50-5946        TCGA-50-6590        TCGA-50-6591        TCGA-50-6592 
"SLC35F1 WILD-TYPE" "SLC35F1 WILD-TYPE" "SLC35F1 WILD-TYPE" "SLC35F1 WILD-TYPE" 
       TCGA-50-6593        TCGA-50-6594        TCGA-50-6595        TCGA-50-6597 
"SLC35F1 WILD-TYPE" "SLC35F1 WILD-TYPE" "SLC35F1 WILD-TYPE" "SLC35F1 WILD-TYPE" 
       TCGA-55-1592        TCGA-55-1594        TCGA-55-1595        TCGA-55-1596 
"SLC35F1 WILD-TYPE" "SLC35F1 WILD-TYPE" "SLC35F1 WILD-TYPE" "SLC35F1 WILD-TYPE" 
       TCGA-55-5899        TCGA-55-6543        TCGA-55-6642        TCGA-55-6712 
  "SLC35F1 MUTATED" "SLC35F1 WILD-TYPE" "SLC35F1 WILD-TYPE" "SLC35F1 WILD-TYPE" 
       TCGA-64-1676        TCGA-64-1677        TCGA-64-1678        TCGA-64-1680 
"SLC35F1 WILD-TYPE" "SLC35F1 WILD-TYPE" "SLC35F1 WILD-TYPE" "SLC35F1 WILD-TYPE" 
       TCGA-64-5774        TCGA-64-5775        TCGA-64-5778        TCGA-64-5779 
"SLC35F1 WILD-TYPE" "SLC35F1 WILD-TYPE" "SLC35F1 WILD-TYPE" "SLC35F1 WILD-TYPE" 
       TCGA-64-5781        TCGA-64-5815        TCGA-67-3770        TCGA-67-3771 
"SLC35F1 WILD-TYPE" "SLC35F1 WILD-TYPE" "SLC35F1 WILD-TYPE" "SLC35F1 WILD-TYPE" 
       TCGA-67-3772        TCGA-67-3773        TCGA-67-3774        TCGA-67-6215 
"SLC35F1 WILD-TYPE" "SLC35F1 WILD-TYPE" "SLC35F1 WILD-TYPE" "SLC35F1 WILD-TYPE" 
       TCGA-67-6216        TCGA-67-6217        TCGA-71-6725        TCGA-73-4658 
"SLC35F1 WILD-TYPE" "SLC35F1 WILD-TYPE" "SLC35F1 WILD-TYPE" "SLC35F1 WILD-TYPE" 
       TCGA-73-4659        TCGA-73-4662        TCGA-73-4666        TCGA-73-4668 
"SLC35F1 WILD-TYPE" "SLC35F1 WILD-TYPE" "SLC35F1 WILD-TYPE" "SLC35F1 WILD-TYPE" 
       TCGA-73-4670        TCGA-73-4675        TCGA-73-4676        TCGA-73-4677 
"SLC35F1 WILD-TYPE" "SLC35F1 WILD-TYPE" "SLC35F1 WILD-TYPE" "SLC35F1 WILD-TYPE" 
       TCGA-91-6828        TCGA-91-6829        TCGA-91-6831        TCGA-91-6835 
"SLC35F1 WILD-TYPE" "SLC35F1 WILD-TYPE" "SLC35F1 WILD-TYPE" "SLC35F1 WILD-TYPE" 
       TCGA-91-6836 
  "SLC35F1 MUTATED" 
[1] "hr=" "1.6"
D75V2, continuous
D75V3, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  SLC35F1 MUTATED      1    8
  SLC35F1 WILD-TYPE   92   71
        clus
vv       SLC35F1 MUTATED SLC35F1 WILD-TYPE
  FEMALE               1                92
  MALE                 8                71
D75V4, continuous
[1] "Remove cluster labels:" "SLC35F1 MUTATED"       
clus
  SLC35F1 MUTATED SLC35F1 WILD-TYPE 
                1                11 
       TCGA-35-4123        TCGA-35-5375        TCGA-64-1677        TCGA-64-5778 
"SLC35F1 WILD-TYPE" "SLC35F1 WILD-TYPE" "SLC35F1 WILD-TYPE" "SLC35F1 WILD-TYPE" 
       TCGA-71-6725        TCGA-73-4659        TCGA-73-4662        TCGA-73-4666 
"SLC35F1 WILD-TYPE" "SLC35F1 WILD-TYPE" "SLC35F1 WILD-TYPE" "SLC35F1 WILD-TYPE" 
       TCGA-73-4668        TCGA-73-4676        TCGA-75-5122 
"SLC35F1 WILD-TYPE" "SLC35F1 WILD-TYPE" "SLC35F1 WILD-TYPE" 
D75V5, multiclass
D75V6, multiclass
    clus
vv   SLC35F1 MUTATED SLC35F1 WILD-TYPE
  T1               2                39
  T2               6               102
  T3               0                14
  T4               1                 7
D75V7, multiclass
       clus
vv      SLC35F1 MUTATED SLC35F1 WILD-TYPE
  N0                  5                90
  N1                  4                33
  N2+N3               0                35
D75V8, multiclass
    clus
vv   SLC35F1 MUTATED SLC35F1 WILD-TYPE
  M0               8               129
  M1               0                 9
  MX               1                21
D75V9, multiclass
     clus
vv    SLC35F1 MUTATED SLC35F1 WILD-TYPE
  I                 6                82
  II                2                31
  III               1                38
  IV                0                 9
D75V10, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  SLC35F1 MUTATED      0    9
  SLC35F1 WILD-TYPE   16  147
     clus
vv    SLC35F1 MUTATED SLC35F1 WILD-TYPE
  NO                0                16
  YES               9               147
D75V11, continuous
D75V12, continuous
D75V13, multiclass
                                             clus
vv                                            SLC35F1 MUTATED SLC35F1 WILD-TYPE
  CURRENT REFORMED SMOKER FOR < OR = 15 YEARS               2                60
  CURRENT REFORMED SMOKER FOR > 15 YEARS                    2                44
  CURRENT SMOKER                                            4                24
  LIFELONG NON-SMOKER                                       1                23
D75V14, continuous

Clustering(76) Variable = FABP12 MUTATION ANALYSIS
D76V1, survival
                  sevent
clus2               0  1
  FABP12 MUTATED    1  1
  FABP12 WILD-TYPE 98 49
  FABP12 MUTATED FABP12 WILD-TYPE 
               2              147 
  FABP12 MUTATED FABP12 WILD-TYPE 
               1               49 
$`FABP12 MUTATED`
TCGA-35-4122 TCGA-50-6593 
        7.36        11.05 

$`FABP12 WILD-TYPE`
TCGA-05-4249 TCGA-05-4250 TCGA-05-4382 TCGA-05-4384 TCGA-05-4390 TCGA-05-4396 
       38.07         3.98        19.92        14.01        37.02         9.96 
TCGA-05-4397 TCGA-05-4398 TCGA-05-4402 TCGA-05-4405 TCGA-05-4415 TCGA-05-4417 
       24.03        47.05         8.02        20.05         2.96        14.93 
TCGA-05-4418 TCGA-05-4420 TCGA-05-4424 TCGA-05-4426 TCGA-05-4427 TCGA-05-4430 
        8.98        29.95        30.02        26.01        26.01        25.02 
TCGA-05-4432 TCGA-05-4433 TCGA-05-4434 TCGA-05-5420 TCGA-05-5423 TCGA-05-5425 
       25.02        24.00        15.02         1.02         4.96         2.96 
TCGA-05-5429 TCGA-05-5715 TCGA-35-3615 TCGA-35-4123 TCGA-35-5375 TCGA-38-4625 
        0.99         2.04         0.46         5.95         8.68        47.61 
TCGA-38-4626 TCGA-38-4627 TCGA-38-4628 TCGA-38-4629 TCGA-38-4630 TCGA-38-4631 
       85.32        37.71        49.02        28.37        35.28        11.64 
TCGA-38-4632 TCGA-38-6178 TCGA-44-2655 TCGA-44-2656 TCGA-44-2657 TCGA-44-2659 
       44.61         5.19        18.87        19.10        13.15        17.39 
TCGA-44-2661 TCGA-44-2662 TCGA-44-2665 TCGA-44-2666 TCGA-44-2668 TCGA-44-3396 
        3.39        15.78        13.15         3.19         8.09        10.22 
TCGA-44-3398 TCGA-44-3918 TCGA-44-3919 TCGA-44-4112 TCGA-44-5643 TCGA-44-5645 
        8.32         6.44         6.21         4.60         3.48         6.84 
TCGA-44-6144 TCGA-44-6145 TCGA-44-6146 TCGA-44-6147 TCGA-44-6148 TCGA-44-6774 
        0.30         3.35         9.93         7.76         3.12         5.42 
TCGA-44-6775 TCGA-44-6776 TCGA-44-6777 TCGA-44-6778 TCGA-44-6779 TCGA-49-4486 
        2.70        63.72        32.45        36.49        16.41        76.21 
TCGA-49-4487 TCGA-49-4488 TCGA-49-4490 TCGA-49-4494 TCGA-49-4501 TCGA-49-4505 
       28.11        28.57        12.66        35.54        46.72        14.07 
TCGA-49-4506 TCGA-49-4507 TCGA-49-4510 TCGA-49-4512 TCGA-49-4514 TCGA-49-6742 
       32.84         8.81        29.46        29.75        43.20        15.02 
TCGA-49-6743 TCGA-49-6744 TCGA-49-6745 TCGA-50-5044 TCGA-50-5045 TCGA-50-5049 
       12.13        12.99         4.93        20.48        71.47        48.82 
TCGA-50-5051 TCGA-50-5055 TCGA-50-5066 TCGA-50-5068 TCGA-50-5072 TCGA-50-5930 
       14.96        25.81         9.76        49.28         8.05         9.27 
TCGA-50-5931 TCGA-50-5932 TCGA-50-5933 TCGA-50-5935 TCGA-50-5936 TCGA-50-5939 
        8.78        35.87        77.88        21.47         8.45        15.12 
TCGA-50-5941 TCGA-50-5942 TCGA-50-5944 TCGA-50-5946 TCGA-50-6590 TCGA-50-6591 
        9.37         4.44        12.26        11.47        42.31         3.88 
TCGA-50-6592 TCGA-50-6594 TCGA-50-6595 TCGA-50-6597 TCGA-55-1592 TCGA-55-1594 
       25.51        12.16         6.21        33.37        23.05        38.73 
TCGA-55-1595 TCGA-55-1596 TCGA-55-5899 TCGA-55-6543 TCGA-55-6642 TCGA-55-6712 
       48.62        45.17         2.86         0.07        32.61         0.79 
TCGA-64-1676 TCGA-64-1677 TCGA-64-1678 TCGA-64-1680 TCGA-64-5774 TCGA-64-5775 
       56.81        20.65        39.09        37.02        83.84         0.10 
TCGA-64-5778 TCGA-64-5779 TCGA-64-5781 TCGA-64-5815 TCGA-67-3770 TCGA-67-3771 
       30.44        16.67        39.52         7.33         0.99         1.97 
TCGA-67-3772 TCGA-67-3773 TCGA-67-3774 TCGA-67-6215 TCGA-67-6216 TCGA-67-6217 
        0.59         2.04         0.59         0.89         0.69        13.87 
TCGA-71-6725 TCGA-73-4658 TCGA-73-4659 TCGA-73-4662 TCGA-73-4666 TCGA-73-4668 
        2.01        52.57        23.38        29.95        20.28        15.35 
TCGA-73-4670 TCGA-73-4675 TCGA-73-4676 TCGA-73-4677 TCGA-91-6828 TCGA-91-6829 
        0.46         1.32         4.01         1.25         1.22        41.33 
TCGA-91-6831 TCGA-91-6835 TCGA-91-6836 
        1.28         1.15         0.36 

  FABP12 MUTATED FABP12 WILD-TYPE 
            7.36             0.07 
  FABP12 MUTATED FABP12 WILD-TYPE 
           11.05            85.32 
  FABP12 MUTATED FABP12 WILD-TYPE 
           9.205           14.010 
[1] "7.4 - 11.1 (9.2)"  "0.1 - 85.3 (14.0)"
      TCGA-05-4249       TCGA-05-4250       TCGA-05-4382       TCGA-05-4384 
"FABP12 WILD-TYPE" "FABP12 WILD-TYPE" "FABP12 WILD-TYPE" "FABP12 WILD-TYPE" 
      TCGA-05-4390       TCGA-05-4396       TCGA-05-4397       TCGA-05-4398 
"FABP12 WILD-TYPE" "FABP12 WILD-TYPE" "FABP12 WILD-TYPE" "FABP12 WILD-TYPE" 
      TCGA-05-4402       TCGA-05-4405       TCGA-05-4415       TCGA-05-4417 
"FABP12 WILD-TYPE" "FABP12 WILD-TYPE" "FABP12 WILD-TYPE" "FABP12 WILD-TYPE" 
      TCGA-05-4418       TCGA-05-4420       TCGA-05-4424       TCGA-05-4426 
"FABP12 WILD-TYPE" "FABP12 WILD-TYPE" "FABP12 WILD-TYPE" "FABP12 WILD-TYPE" 
      TCGA-05-4427       TCGA-05-4430       TCGA-05-4432       TCGA-05-4433 
"FABP12 WILD-TYPE" "FABP12 WILD-TYPE" "FABP12 WILD-TYPE" "FABP12 WILD-TYPE" 
      TCGA-05-4434       TCGA-05-5420       TCGA-05-5423       TCGA-05-5425 
"FABP12 WILD-TYPE" "FABP12 WILD-TYPE" "FABP12 WILD-TYPE" "FABP12 WILD-TYPE" 
      TCGA-05-5429       TCGA-05-5715       TCGA-35-3615       TCGA-35-4122 
"FABP12 WILD-TYPE" "FABP12 WILD-TYPE" "FABP12 WILD-TYPE"   "FABP12 MUTATED" 
      TCGA-35-4123       TCGA-35-5375       TCGA-38-4625       TCGA-38-4626 
"FABP12 WILD-TYPE" "FABP12 WILD-TYPE" "FABP12 WILD-TYPE" "FABP12 WILD-TYPE" 
      TCGA-38-4627       TCGA-38-4628       TCGA-38-4629       TCGA-38-4630 
"FABP12 WILD-TYPE" "FABP12 WILD-TYPE" "FABP12 WILD-TYPE" "FABP12 WILD-TYPE" 
      TCGA-38-4631       TCGA-38-4632       TCGA-38-6178       TCGA-44-2655 
"FABP12 WILD-TYPE" "FABP12 WILD-TYPE" "FABP12 WILD-TYPE" "FABP12 WILD-TYPE" 
      TCGA-44-2656       TCGA-44-2657       TCGA-44-2659       TCGA-44-2661 
"FABP12 WILD-TYPE" "FABP12 WILD-TYPE" "FABP12 WILD-TYPE" "FABP12 WILD-TYPE" 
      TCGA-44-2662       TCGA-44-2665       TCGA-44-2666       TCGA-44-2668 
"FABP12 WILD-TYPE" "FABP12 WILD-TYPE" "FABP12 WILD-TYPE" "FABP12 WILD-TYPE" 
      TCGA-44-3396       TCGA-44-3398       TCGA-44-3918       TCGA-44-3919 
"FABP12 WILD-TYPE" "FABP12 WILD-TYPE" "FABP12 WILD-TYPE" "FABP12 WILD-TYPE" 
      TCGA-44-4112       TCGA-44-5643       TCGA-44-5645       TCGA-44-6144 
"FABP12 WILD-TYPE" "FABP12 WILD-TYPE" "FABP12 WILD-TYPE" "FABP12 WILD-TYPE" 
      TCGA-44-6145       TCGA-44-6146       TCGA-44-6147       TCGA-44-6148 
"FABP12 WILD-TYPE" "FABP12 WILD-TYPE" "FABP12 WILD-TYPE" "FABP12 WILD-TYPE" 
      TCGA-44-6774       TCGA-44-6775       TCGA-44-6776       TCGA-44-6777 
"FABP12 WILD-TYPE" "FABP12 WILD-TYPE" "FABP12 WILD-TYPE" "FABP12 WILD-TYPE" 
      TCGA-44-6778       TCGA-44-6779       TCGA-49-4486       TCGA-49-4487 
"FABP12 WILD-TYPE" "FABP12 WILD-TYPE" "FABP12 WILD-TYPE" "FABP12 WILD-TYPE" 
      TCGA-49-4488       TCGA-49-4490       TCGA-49-4494       TCGA-49-4501 
"FABP12 WILD-TYPE" "FABP12 WILD-TYPE" "FABP12 WILD-TYPE" "FABP12 WILD-TYPE" 
      TCGA-49-4505       TCGA-49-4506       TCGA-49-4507       TCGA-49-4510 
"FABP12 WILD-TYPE" "FABP12 WILD-TYPE" "FABP12 WILD-TYPE" "FABP12 WILD-TYPE" 
      TCGA-49-4512       TCGA-49-4514       TCGA-49-6742       TCGA-49-6743 
"FABP12 WILD-TYPE" "FABP12 WILD-TYPE" "FABP12 WILD-TYPE" "FABP12 WILD-TYPE" 
      TCGA-49-6744       TCGA-49-6745       TCGA-50-5044       TCGA-50-5045 
"FABP12 WILD-TYPE" "FABP12 WILD-TYPE" "FABP12 WILD-TYPE" "FABP12 WILD-TYPE" 
      TCGA-50-5049       TCGA-50-5051       TCGA-50-5055       TCGA-50-5066 
"FABP12 WILD-TYPE" "FABP12 WILD-TYPE" "FABP12 WILD-TYPE" "FABP12 WILD-TYPE" 
      TCGA-50-5068       TCGA-50-5072       TCGA-50-5930       TCGA-50-5931 
"FABP12 WILD-TYPE" "FABP12 WILD-TYPE" "FABP12 WILD-TYPE" "FABP12 WILD-TYPE" 
      TCGA-50-5932       TCGA-50-5933       TCGA-50-5935       TCGA-50-5936 
"FABP12 WILD-TYPE" "FABP12 WILD-TYPE" "FABP12 WILD-TYPE" "FABP12 WILD-TYPE" 
      TCGA-50-5939       TCGA-50-5941       TCGA-50-5942       TCGA-50-5944 
"FABP12 WILD-TYPE" "FABP12 WILD-TYPE" "FABP12 WILD-TYPE" "FABP12 WILD-TYPE" 
      TCGA-50-5946       TCGA-50-6590       TCGA-50-6591       TCGA-50-6592 
"FABP12 WILD-TYPE" "FABP12 WILD-TYPE" "FABP12 WILD-TYPE" "FABP12 WILD-TYPE" 
      TCGA-50-6593       TCGA-50-6594       TCGA-50-6595       TCGA-50-6597 
  "FABP12 MUTATED" "FABP12 WILD-TYPE" "FABP12 WILD-TYPE" "FABP12 WILD-TYPE" 
      TCGA-55-1592       TCGA-55-1594       TCGA-55-1595       TCGA-55-1596 
"FABP12 WILD-TYPE" "FABP12 WILD-TYPE" "FABP12 WILD-TYPE" "FABP12 WILD-TYPE" 
      TCGA-55-5899       TCGA-55-6543       TCGA-55-6642       TCGA-55-6712 
"FABP12 WILD-TYPE" "FABP12 WILD-TYPE" "FABP12 WILD-TYPE" "FABP12 WILD-TYPE" 
      TCGA-64-1676       TCGA-64-1677       TCGA-64-1678       TCGA-64-1680 
"FABP12 WILD-TYPE" "FABP12 WILD-TYPE" "FABP12 WILD-TYPE" "FABP12 WILD-TYPE" 
      TCGA-64-5774       TCGA-64-5775       TCGA-64-5778       TCGA-64-5779 
"FABP12 WILD-TYPE" "FABP12 WILD-TYPE" "FABP12 WILD-TYPE" "FABP12 WILD-TYPE" 
      TCGA-64-5781       TCGA-64-5815       TCGA-67-3770       TCGA-67-3771 
"FABP12 WILD-TYPE" "FABP12 WILD-TYPE" "FABP12 WILD-TYPE" "FABP12 WILD-TYPE" 
      TCGA-67-3772       TCGA-67-3773       TCGA-67-3774       TCGA-67-6215 
"FABP12 WILD-TYPE" "FABP12 WILD-TYPE" "FABP12 WILD-TYPE" "FABP12 WILD-TYPE" 
      TCGA-67-6216       TCGA-67-6217       TCGA-71-6725       TCGA-73-4658 
"FABP12 WILD-TYPE" "FABP12 WILD-TYPE" "FABP12 WILD-TYPE" "FABP12 WILD-TYPE" 
      TCGA-73-4659       TCGA-73-4662       TCGA-73-4666       TCGA-73-4668 
"FABP12 WILD-TYPE" "FABP12 WILD-TYPE" "FABP12 WILD-TYPE" "FABP12 WILD-TYPE" 
      TCGA-73-4670       TCGA-73-4675       TCGA-73-4676       TCGA-73-4677 
"FABP12 WILD-TYPE" "FABP12 WILD-TYPE" "FABP12 WILD-TYPE" "FABP12 WILD-TYPE" 
      TCGA-91-6828       TCGA-91-6829       TCGA-91-6831       TCGA-91-6835 
"FABP12 WILD-TYPE" "FABP12 WILD-TYPE" "FABP12 WILD-TYPE" "FABP12 WILD-TYPE" 
      TCGA-91-6836 
"FABP12 WILD-TYPE" 
      TCGA-05-4249       TCGA-05-4250       TCGA-05-4382       TCGA-05-4384 
"FABP12 WILD-TYPE" "FABP12 WILD-TYPE" "FABP12 WILD-TYPE" "FABP12 WILD-TYPE" 
      TCGA-05-4390       TCGA-05-4396       TCGA-05-4397       TCGA-05-4398 
"FABP12 WILD-TYPE" "FABP12 WILD-TYPE" "FABP12 WILD-TYPE" "FABP12 WILD-TYPE" 
      TCGA-05-4402       TCGA-05-4405       TCGA-05-4415       TCGA-05-4417 
"FABP12 WILD-TYPE" "FABP12 WILD-TYPE" "FABP12 WILD-TYPE" "FABP12 WILD-TYPE" 
      TCGA-05-4418       TCGA-05-4420       TCGA-05-4424       TCGA-05-4426 
"FABP12 WILD-TYPE" "FABP12 WILD-TYPE" "FABP12 WILD-TYPE" "FABP12 WILD-TYPE" 
      TCGA-05-4427       TCGA-05-4430       TCGA-05-4432       TCGA-05-4433 
"FABP12 WILD-TYPE" "FABP12 WILD-TYPE" "FABP12 WILD-TYPE" "FABP12 WILD-TYPE" 
      TCGA-05-4434       TCGA-05-5420       TCGA-05-5423       TCGA-05-5425 
"FABP12 WILD-TYPE" "FABP12 WILD-TYPE" "FABP12 WILD-TYPE" "FABP12 WILD-TYPE" 
      TCGA-05-5429       TCGA-05-5715       TCGA-35-3615       TCGA-35-4122 
"FABP12 WILD-TYPE" "FABP12 WILD-TYPE" "FABP12 WILD-TYPE"   "FABP12 MUTATED" 
      TCGA-35-4123       TCGA-35-5375       TCGA-38-4625       TCGA-38-4626 
"FABP12 WILD-TYPE" "FABP12 WILD-TYPE" "FABP12 WILD-TYPE" "FABP12 WILD-TYPE" 
      TCGA-38-4627       TCGA-38-4628       TCGA-38-4629       TCGA-38-4630 
"FABP12 WILD-TYPE" "FABP12 WILD-TYPE" "FABP12 WILD-TYPE" "FABP12 WILD-TYPE" 
      TCGA-38-4631       TCGA-38-4632       TCGA-38-6178       TCGA-44-2655 
"FABP12 WILD-TYPE" "FABP12 WILD-TYPE" "FABP12 WILD-TYPE" "FABP12 WILD-TYPE" 
      TCGA-44-2656       TCGA-44-2657       TCGA-44-2659       TCGA-44-2661 
"FABP12 WILD-TYPE" "FABP12 WILD-TYPE" "FABP12 WILD-TYPE" "FABP12 WILD-TYPE" 
      TCGA-44-2662       TCGA-44-2665       TCGA-44-2666       TCGA-44-2668 
"FABP12 WILD-TYPE" "FABP12 WILD-TYPE" "FABP12 WILD-TYPE" "FABP12 WILD-TYPE" 
      TCGA-44-3396       TCGA-44-3398       TCGA-44-3918       TCGA-44-3919 
"FABP12 WILD-TYPE" "FABP12 WILD-TYPE" "FABP12 WILD-TYPE" "FABP12 WILD-TYPE" 
      TCGA-44-4112       TCGA-44-5643       TCGA-44-5645       TCGA-44-6144 
"FABP12 WILD-TYPE" "FABP12 WILD-TYPE" "FABP12 WILD-TYPE" "FABP12 WILD-TYPE" 
      TCGA-44-6145       TCGA-44-6146       TCGA-44-6147       TCGA-44-6148 
"FABP12 WILD-TYPE" "FABP12 WILD-TYPE" "FABP12 WILD-TYPE" "FABP12 WILD-TYPE" 
      TCGA-44-6774       TCGA-44-6775       TCGA-44-6776       TCGA-44-6777 
"FABP12 WILD-TYPE" "FABP12 WILD-TYPE" "FABP12 WILD-TYPE" "FABP12 WILD-TYPE" 
      TCGA-44-6778       TCGA-44-6779       TCGA-49-4486       TCGA-49-4487 
"FABP12 WILD-TYPE" "FABP12 WILD-TYPE" "FABP12 WILD-TYPE" "FABP12 WILD-TYPE" 
      TCGA-49-4488       TCGA-49-4490       TCGA-49-4494       TCGA-49-4501 
"FABP12 WILD-TYPE" "FABP12 WILD-TYPE" "FABP12 WILD-TYPE" "FABP12 WILD-TYPE" 
      TCGA-49-4505       TCGA-49-4506       TCGA-49-4507       TCGA-49-4510 
"FABP12 WILD-TYPE" "FABP12 WILD-TYPE" "FABP12 WILD-TYPE" "FABP12 WILD-TYPE" 
      TCGA-49-4512       TCGA-49-4514       TCGA-49-6742       TCGA-49-6743 
"FABP12 WILD-TYPE" "FABP12 WILD-TYPE" "FABP12 WILD-TYPE" "FABP12 WILD-TYPE" 
      TCGA-49-6744       TCGA-49-6745       TCGA-50-5044       TCGA-50-5045 
"FABP12 WILD-TYPE" "FABP12 WILD-TYPE" "FABP12 WILD-TYPE" "FABP12 WILD-TYPE" 
      TCGA-50-5049       TCGA-50-5051       TCGA-50-5055       TCGA-50-5066 
"FABP12 WILD-TYPE" "FABP12 WILD-TYPE" "FABP12 WILD-TYPE" "FABP12 WILD-TYPE" 
      TCGA-50-5068       TCGA-50-5072       TCGA-50-5930       TCGA-50-5931 
"FABP12 WILD-TYPE" "FABP12 WILD-TYPE" "FABP12 WILD-TYPE" "FABP12 WILD-TYPE" 
      TCGA-50-5932       TCGA-50-5933       TCGA-50-5935       TCGA-50-5936 
"FABP12 WILD-TYPE" "FABP12 WILD-TYPE" "FABP12 WILD-TYPE" "FABP12 WILD-TYPE" 
      TCGA-50-5939       TCGA-50-5941       TCGA-50-5942       TCGA-50-5944 
"FABP12 WILD-TYPE" "FABP12 WILD-TYPE" "FABP12 WILD-TYPE" "FABP12 WILD-TYPE" 
      TCGA-50-5946       TCGA-50-6590       TCGA-50-6591       TCGA-50-6592 
"FABP12 WILD-TYPE" "FABP12 WILD-TYPE" "FABP12 WILD-TYPE" "FABP12 WILD-TYPE" 
      TCGA-50-6593       TCGA-50-6594       TCGA-50-6595       TCGA-50-6597 
  "FABP12 MUTATED" "FABP12 WILD-TYPE" "FABP12 WILD-TYPE" "FABP12 WILD-TYPE" 
      TCGA-55-1592       TCGA-55-1594       TCGA-55-1595       TCGA-55-1596 
"FABP12 WILD-TYPE" "FABP12 WILD-TYPE" "FABP12 WILD-TYPE" "FABP12 WILD-TYPE" 
      TCGA-55-5899       TCGA-55-6543       TCGA-55-6642       TCGA-55-6712 
"FABP12 WILD-TYPE" "FABP12 WILD-TYPE" "FABP12 WILD-TYPE" "FABP12 WILD-TYPE" 
      TCGA-64-1676       TCGA-64-1677       TCGA-64-1678       TCGA-64-1680 
"FABP12 WILD-TYPE" "FABP12 WILD-TYPE" "FABP12 WILD-TYPE" "FABP12 WILD-TYPE" 
      TCGA-64-5774       TCGA-64-5775       TCGA-64-5778       TCGA-64-5779 
"FABP12 WILD-TYPE" "FABP12 WILD-TYPE" "FABP12 WILD-TYPE" "FABP12 WILD-TYPE" 
      TCGA-64-5781       TCGA-64-5815       TCGA-67-3770       TCGA-67-3771 
"FABP12 WILD-TYPE" "FABP12 WILD-TYPE" "FABP12 WILD-TYPE" "FABP12 WILD-TYPE" 
      TCGA-67-3772       TCGA-67-3773       TCGA-67-3774       TCGA-67-6215 
"FABP12 WILD-TYPE" "FABP12 WILD-TYPE" "FABP12 WILD-TYPE" "FABP12 WILD-TYPE" 
      TCGA-67-6216       TCGA-67-6217       TCGA-71-6725       TCGA-73-4658 
"FABP12 WILD-TYPE" "FABP12 WILD-TYPE" "FABP12 WILD-TYPE" "FABP12 WILD-TYPE" 
      TCGA-73-4659       TCGA-73-4662       TCGA-73-4666       TCGA-73-4668 
"FABP12 WILD-TYPE" "FABP12 WILD-TYPE" "FABP12 WILD-TYPE" "FABP12 WILD-TYPE" 
      TCGA-73-4670       TCGA-73-4675       TCGA-73-4676       TCGA-73-4677 
"FABP12 WILD-TYPE" "FABP12 WILD-TYPE" "FABP12 WILD-TYPE" "FABP12 WILD-TYPE" 
      TCGA-91-6828       TCGA-91-6829       TCGA-91-6831       TCGA-91-6835 
"FABP12 WILD-TYPE" "FABP12 WILD-TYPE" "FABP12 WILD-TYPE" "FABP12 WILD-TYPE" 
      TCGA-91-6836 
"FABP12 WILD-TYPE" 
      TCGA-05-4249       TCGA-05-4250       TCGA-05-4382       TCGA-05-4384 
"FABP12 WILD-TYPE" "FABP12 WILD-TYPE" "FABP12 WILD-TYPE" "FABP12 WILD-TYPE" 
      TCGA-05-4390       TCGA-05-4396       TCGA-05-4397       TCGA-05-4398 
"FABP12 WILD-TYPE" "FABP12 WILD-TYPE" "FABP12 WILD-TYPE" "FABP12 WILD-TYPE" 
      TCGA-05-4402       TCGA-05-4405       TCGA-05-4415       TCGA-05-4417 
"FABP12 WILD-TYPE" "FABP12 WILD-TYPE" "FABP12 WILD-TYPE" "FABP12 WILD-TYPE" 
      TCGA-05-4418       TCGA-05-4420       TCGA-05-4424       TCGA-05-4426 
"FABP12 WILD-TYPE" "FABP12 WILD-TYPE" "FABP12 WILD-TYPE" "FABP12 WILD-TYPE" 
      TCGA-05-4427       TCGA-05-4430       TCGA-05-4432       TCGA-05-4433 
"FABP12 WILD-TYPE" "FABP12 WILD-TYPE" "FABP12 WILD-TYPE" "FABP12 WILD-TYPE" 
      TCGA-05-4434       TCGA-05-5420       TCGA-05-5423       TCGA-05-5425 
"FABP12 WILD-TYPE" "FABP12 WILD-TYPE" "FABP12 WILD-TYPE" "FABP12 WILD-TYPE" 
      TCGA-05-5429       TCGA-05-5715       TCGA-35-3615       TCGA-35-4122 
"FABP12 WILD-TYPE" "FABP12 WILD-TYPE" "FABP12 WILD-TYPE"   "FABP12 MUTATED" 
      TCGA-35-4123       TCGA-35-5375       TCGA-38-4625       TCGA-38-4626 
"FABP12 WILD-TYPE" "FABP12 WILD-TYPE" "FABP12 WILD-TYPE" "FABP12 WILD-TYPE" 
      TCGA-38-4627       TCGA-38-4628       TCGA-38-4629       TCGA-38-4630 
"FABP12 WILD-TYPE" "FABP12 WILD-TYPE" "FABP12 WILD-TYPE" "FABP12 WILD-TYPE" 
      TCGA-38-4631       TCGA-38-4632       TCGA-38-6178       TCGA-44-2655 
"FABP12 WILD-TYPE" "FABP12 WILD-TYPE" "FABP12 WILD-TYPE" "FABP12 WILD-TYPE" 
      TCGA-44-2656       TCGA-44-2657       TCGA-44-2659       TCGA-44-2661 
"FABP12 WILD-TYPE" "FABP12 WILD-TYPE" "FABP12 WILD-TYPE" "FABP12 WILD-TYPE" 
      TCGA-44-2662       TCGA-44-2665       TCGA-44-2666       TCGA-44-2668 
"FABP12 WILD-TYPE" "FABP12 WILD-TYPE" "FABP12 WILD-TYPE" "FABP12 WILD-TYPE" 
      TCGA-44-3396       TCGA-44-3398       TCGA-44-3918       TCGA-44-3919 
"FABP12 WILD-TYPE" "FABP12 WILD-TYPE" "FABP12 WILD-TYPE" "FABP12 WILD-TYPE" 
      TCGA-44-4112       TCGA-44-5643       TCGA-44-5645       TCGA-44-6144 
"FABP12 WILD-TYPE" "FABP12 WILD-TYPE" "FABP12 WILD-TYPE" "FABP12 WILD-TYPE" 
      TCGA-44-6145       TCGA-44-6146       TCGA-44-6147       TCGA-44-6148 
"FABP12 WILD-TYPE" "FABP12 WILD-TYPE" "FABP12 WILD-TYPE" "FABP12 WILD-TYPE" 
      TCGA-44-6774       TCGA-44-6775       TCGA-44-6776       TCGA-44-6777 
"FABP12 WILD-TYPE" "FABP12 WILD-TYPE" "FABP12 WILD-TYPE" "FABP12 WILD-TYPE" 
      TCGA-44-6778       TCGA-44-6779       TCGA-49-4486       TCGA-49-4487 
"FABP12 WILD-TYPE" "FABP12 WILD-TYPE" "FABP12 WILD-TYPE" "FABP12 WILD-TYPE" 
      TCGA-49-4488       TCGA-49-4490       TCGA-49-4494       TCGA-49-4501 
"FABP12 WILD-TYPE" "FABP12 WILD-TYPE" "FABP12 WILD-TYPE" "FABP12 WILD-TYPE" 
      TCGA-49-4505       TCGA-49-4506       TCGA-49-4507       TCGA-49-4510 
"FABP12 WILD-TYPE" "FABP12 WILD-TYPE" "FABP12 WILD-TYPE" "FABP12 WILD-TYPE" 
      TCGA-49-4512       TCGA-49-4514       TCGA-49-6742       TCGA-49-6743 
"FABP12 WILD-TYPE" "FABP12 WILD-TYPE" "FABP12 WILD-TYPE" "FABP12 WILD-TYPE" 
      TCGA-49-6744       TCGA-49-6745       TCGA-50-5044       TCGA-50-5045 
"FABP12 WILD-TYPE" "FABP12 WILD-TYPE" "FABP12 WILD-TYPE" "FABP12 WILD-TYPE" 
      TCGA-50-5049       TCGA-50-5051       TCGA-50-5055       TCGA-50-5066 
"FABP12 WILD-TYPE" "FABP12 WILD-TYPE" "FABP12 WILD-TYPE" "FABP12 WILD-TYPE" 
      TCGA-50-5068       TCGA-50-5072       TCGA-50-5930       TCGA-50-5931 
"FABP12 WILD-TYPE" "FABP12 WILD-TYPE" "FABP12 WILD-TYPE" "FABP12 WILD-TYPE" 
      TCGA-50-5932       TCGA-50-5933       TCGA-50-5935       TCGA-50-5936 
"FABP12 WILD-TYPE" "FABP12 WILD-TYPE" "FABP12 WILD-TYPE" "FABP12 WILD-TYPE" 
      TCGA-50-5939       TCGA-50-5941       TCGA-50-5942       TCGA-50-5944 
"FABP12 WILD-TYPE" "FABP12 WILD-TYPE" "FABP12 WILD-TYPE" "FABP12 WILD-TYPE" 
      TCGA-50-5946       TCGA-50-6590       TCGA-50-6591       TCGA-50-6592 
"FABP12 WILD-TYPE" "FABP12 WILD-TYPE" "FABP12 WILD-TYPE" "FABP12 WILD-TYPE" 
      TCGA-50-6593       TCGA-50-6594       TCGA-50-6595       TCGA-50-6597 
  "FABP12 MUTATED" "FABP12 WILD-TYPE" "FABP12 WILD-TYPE" "FABP12 WILD-TYPE" 
      TCGA-55-1592       TCGA-55-1594       TCGA-55-1595       TCGA-55-1596 
"FABP12 WILD-TYPE" "FABP12 WILD-TYPE" "FABP12 WILD-TYPE" "FABP12 WILD-TYPE" 
      TCGA-55-5899       TCGA-55-6543       TCGA-55-6642       TCGA-55-6712 
"FABP12 WILD-TYPE" "FABP12 WILD-TYPE" "FABP12 WILD-TYPE" "FABP12 WILD-TYPE" 
      TCGA-64-1676       TCGA-64-1677       TCGA-64-1678       TCGA-64-1680 
"FABP12 WILD-TYPE" "FABP12 WILD-TYPE" "FABP12 WILD-TYPE" "FABP12 WILD-TYPE" 
      TCGA-64-5774       TCGA-64-5775       TCGA-64-5778       TCGA-64-5779 
"FABP12 WILD-TYPE" "FABP12 WILD-TYPE" "FABP12 WILD-TYPE" "FABP12 WILD-TYPE" 
      TCGA-64-5781       TCGA-64-5815       TCGA-67-3770       TCGA-67-3771 
"FABP12 WILD-TYPE" "FABP12 WILD-TYPE" "FABP12 WILD-TYPE" "FABP12 WILD-TYPE" 
      TCGA-67-3772       TCGA-67-3773       TCGA-67-3774       TCGA-67-6215 
"FABP12 WILD-TYPE" "FABP12 WILD-TYPE" "FABP12 WILD-TYPE" "FABP12 WILD-TYPE" 
      TCGA-67-6216       TCGA-67-6217       TCGA-71-6725       TCGA-73-4658 
"FABP12 WILD-TYPE" "FABP12 WILD-TYPE" "FABP12 WILD-TYPE" "FABP12 WILD-TYPE" 
      TCGA-73-4659       TCGA-73-4662       TCGA-73-4666       TCGA-73-4668 
"FABP12 WILD-TYPE" "FABP12 WILD-TYPE" "FABP12 WILD-TYPE" "FABP12 WILD-TYPE" 
      TCGA-73-4670       TCGA-73-4675       TCGA-73-4676       TCGA-73-4677 
"FABP12 WILD-TYPE" "FABP12 WILD-TYPE" "FABP12 WILD-TYPE" "FABP12 WILD-TYPE" 
      TCGA-91-6828       TCGA-91-6829       TCGA-91-6831       TCGA-91-6835 
"FABP12 WILD-TYPE" "FABP12 WILD-TYPE" "FABP12 WILD-TYPE" "FABP12 WILD-TYPE" 
      TCGA-91-6836 
"FABP12 WILD-TYPE" 
[1] "Remove cluster labels:" "FABP12 MUTATED"        
clus
  FABP12 MUTATED FABP12 WILD-TYPE 
               2              147 
      TCGA-05-4249       TCGA-05-4250       TCGA-05-4382       TCGA-05-4384 
"FABP12 WILD-TYPE" "FABP12 WILD-TYPE" "FABP12 WILD-TYPE" "FABP12 WILD-TYPE" 
      TCGA-05-4390       TCGA-05-4396       TCGA-05-4397       TCGA-05-4398 
"FABP12 WILD-TYPE" "FABP12 WILD-TYPE" "FABP12 WILD-TYPE" "FABP12 WILD-TYPE" 
      TCGA-05-4402       TCGA-05-4405       TCGA-05-4415       TCGA-05-4417 
"FABP12 WILD-TYPE" "FABP12 WILD-TYPE" "FABP12 WILD-TYPE" "FABP12 WILD-TYPE" 
      TCGA-05-4418       TCGA-05-4420       TCGA-05-4424       TCGA-05-4426 
"FABP12 WILD-TYPE" "FABP12 WILD-TYPE" "FABP12 WILD-TYPE" "FABP12 WILD-TYPE" 
      TCGA-05-4427       TCGA-05-4430       TCGA-05-4432       TCGA-05-4433 
"FABP12 WILD-TYPE" "FABP12 WILD-TYPE" "FABP12 WILD-TYPE" "FABP12 WILD-TYPE" 
      TCGA-05-4434       TCGA-05-5420       TCGA-05-5423       TCGA-05-5425 
"FABP12 WILD-TYPE" "FABP12 WILD-TYPE" "FABP12 WILD-TYPE" "FABP12 WILD-TYPE" 
      TCGA-05-5429       TCGA-05-5715       TCGA-35-3615       TCGA-35-4123 
"FABP12 WILD-TYPE" "FABP12 WILD-TYPE" "FABP12 WILD-TYPE" "FABP12 WILD-TYPE" 
      TCGA-35-5375       TCGA-38-4625       TCGA-38-4626       TCGA-38-4627 
"FABP12 WILD-TYPE" "FABP12 WILD-TYPE" "FABP12 WILD-TYPE" "FABP12 WILD-TYPE" 
      TCGA-38-4628       TCGA-38-4629       TCGA-38-4630       TCGA-38-4631 
"FABP12 WILD-TYPE" "FABP12 WILD-TYPE" "FABP12 WILD-TYPE" "FABP12 WILD-TYPE" 
      TCGA-38-4632       TCGA-38-6178       TCGA-44-2655       TCGA-44-2656 
"FABP12 WILD-TYPE" "FABP12 WILD-TYPE" "FABP12 WILD-TYPE" "FABP12 WILD-TYPE" 
      TCGA-44-2657       TCGA-44-2659       TCGA-44-2661       TCGA-44-2662 
"FABP12 WILD-TYPE" "FABP12 WILD-TYPE" "FABP12 WILD-TYPE" "FABP12 WILD-TYPE" 
      TCGA-44-2665       TCGA-44-2666       TCGA-44-2668       TCGA-44-3396 
"FABP12 WILD-TYPE" "FABP12 WILD-TYPE" "FABP12 WILD-TYPE" "FABP12 WILD-TYPE" 
      TCGA-44-3398       TCGA-44-3918       TCGA-44-3919       TCGA-44-4112 
"FABP12 WILD-TYPE" "FABP12 WILD-TYPE" "FABP12 WILD-TYPE" "FABP12 WILD-TYPE" 
      TCGA-44-5643       TCGA-44-5645       TCGA-44-6144       TCGA-44-6145 
"FABP12 WILD-TYPE" "FABP12 WILD-TYPE" "FABP12 WILD-TYPE" "FABP12 WILD-TYPE" 
      TCGA-44-6146       TCGA-44-6147       TCGA-44-6148       TCGA-44-6774 
"FABP12 WILD-TYPE" "FABP12 WILD-TYPE" "FABP12 WILD-TYPE" "FABP12 WILD-TYPE" 
      TCGA-44-6775       TCGA-44-6776       TCGA-44-6777       TCGA-44-6778 
"FABP12 WILD-TYPE" "FABP12 WILD-TYPE" "FABP12 WILD-TYPE" "FABP12 WILD-TYPE" 
      TCGA-44-6779       TCGA-49-4486       TCGA-49-4487       TCGA-49-4488 
"FABP12 WILD-TYPE" "FABP12 WILD-TYPE" "FABP12 WILD-TYPE" "FABP12 WILD-TYPE" 
      TCGA-49-4490       TCGA-49-4494       TCGA-49-4501       TCGA-49-4505 
"FABP12 WILD-TYPE" "FABP12 WILD-TYPE" "FABP12 WILD-TYPE" "FABP12 WILD-TYPE" 
      TCGA-49-4506       TCGA-49-4507       TCGA-49-4510       TCGA-49-4512 
"FABP12 WILD-TYPE" "FABP12 WILD-TYPE" "FABP12 WILD-TYPE" "FABP12 WILD-TYPE" 
      TCGA-49-4514       TCGA-49-6742       TCGA-49-6743       TCGA-49-6744 
"FABP12 WILD-TYPE" "FABP12 WILD-TYPE" "FABP12 WILD-TYPE" "FABP12 WILD-TYPE" 
      TCGA-49-6745       TCGA-50-5044       TCGA-50-5045       TCGA-50-5049 
"FABP12 WILD-TYPE" "FABP12 WILD-TYPE" "FABP12 WILD-TYPE" "FABP12 WILD-TYPE" 
      TCGA-50-5051       TCGA-50-5055       TCGA-50-5066       TCGA-50-5068 
"FABP12 WILD-TYPE" "FABP12 WILD-TYPE" "FABP12 WILD-TYPE" "FABP12 WILD-TYPE" 
      TCGA-50-5072       TCGA-50-5930       TCGA-50-5931       TCGA-50-5932 
"FABP12 WILD-TYPE" "FABP12 WILD-TYPE" "FABP12 WILD-TYPE" "FABP12 WILD-TYPE" 
      TCGA-50-5933       TCGA-50-5935       TCGA-50-5936       TCGA-50-5939 
"FABP12 WILD-TYPE" "FABP12 WILD-TYPE" "FABP12 WILD-TYPE" "FABP12 WILD-TYPE" 
      TCGA-50-5941       TCGA-50-5942       TCGA-50-5944       TCGA-50-5946 
"FABP12 WILD-TYPE" "FABP12 WILD-TYPE" "FABP12 WILD-TYPE" "FABP12 WILD-TYPE" 
      TCGA-50-6590       TCGA-50-6591       TCGA-50-6592       TCGA-50-6594 
"FABP12 WILD-TYPE" "FABP12 WILD-TYPE" "FABP12 WILD-TYPE" "FABP12 WILD-TYPE" 
      TCGA-50-6595       TCGA-50-6597       TCGA-55-1592       TCGA-55-1594 
"FABP12 WILD-TYPE" "FABP12 WILD-TYPE" "FABP12 WILD-TYPE" "FABP12 WILD-TYPE" 
      TCGA-55-1595       TCGA-55-1596       TCGA-55-5899       TCGA-55-6543 
"FABP12 WILD-TYPE" "FABP12 WILD-TYPE" "FABP12 WILD-TYPE" "FABP12 WILD-TYPE" 
      TCGA-55-6642       TCGA-55-6712       TCGA-64-1676       TCGA-64-1677 
"FABP12 WILD-TYPE" "FABP12 WILD-TYPE" "FABP12 WILD-TYPE" "FABP12 WILD-TYPE" 
      TCGA-64-1678       TCGA-64-1680       TCGA-64-5774       TCGA-64-5775 
"FABP12 WILD-TYPE" "FABP12 WILD-TYPE" "FABP12 WILD-TYPE" "FABP12 WILD-TYPE" 
      TCGA-64-5778       TCGA-64-5779       TCGA-64-5781       TCGA-64-5815 
"FABP12 WILD-TYPE" "FABP12 WILD-TYPE" "FABP12 WILD-TYPE" "FABP12 WILD-TYPE" 
      TCGA-67-3770       TCGA-67-3771       TCGA-67-3772       TCGA-67-3773 
"FABP12 WILD-TYPE" "FABP12 WILD-TYPE" "FABP12 WILD-TYPE" "FABP12 WILD-TYPE" 
      TCGA-67-3774       TCGA-67-6215       TCGA-67-6216       TCGA-67-6217 
"FABP12 WILD-TYPE" "FABP12 WILD-TYPE" "FABP12 WILD-TYPE" "FABP12 WILD-TYPE" 
      TCGA-71-6725       TCGA-73-4658       TCGA-73-4659       TCGA-73-4662 
"FABP12 WILD-TYPE" "FABP12 WILD-TYPE" "FABP12 WILD-TYPE" "FABP12 WILD-TYPE" 
      TCGA-73-4666       TCGA-73-4668       TCGA-73-4670       TCGA-73-4675 
"FABP12 WILD-TYPE" "FABP12 WILD-TYPE" "FABP12 WILD-TYPE" "FABP12 WILD-TYPE" 
      TCGA-73-4676       TCGA-73-4677       TCGA-91-6828       TCGA-91-6829 
"FABP12 WILD-TYPE" "FABP12 WILD-TYPE" "FABP12 WILD-TYPE" "FABP12 WILD-TYPE" 
      TCGA-91-6831       TCGA-91-6835       TCGA-91-6836 
"FABP12 WILD-TYPE" "FABP12 WILD-TYPE" "FABP12 WILD-TYPE" 
D76V2, continuous
[1] "Remove cluster labels:" "FABP12 MUTATED"        
clus
  FABP12 MUTATED FABP12 WILD-TYPE 
               2              153 
      TCGA-05-4244       TCGA-05-4249       TCGA-05-4250       TCGA-05-4382 
"FABP12 WILD-TYPE" "FABP12 WILD-TYPE" "FABP12 WILD-TYPE" "FABP12 WILD-TYPE" 
      TCGA-05-4384       TCGA-05-4389       TCGA-05-4390       TCGA-05-4395 
"FABP12 WILD-TYPE" "FABP12 WILD-TYPE" "FABP12 WILD-TYPE" "FABP12 WILD-TYPE" 
      TCGA-05-4396       TCGA-05-4397       TCGA-05-4398       TCGA-05-4402 
"FABP12 WILD-TYPE" "FABP12 WILD-TYPE" "FABP12 WILD-TYPE" "FABP12 WILD-TYPE" 
      TCGA-05-4403       TCGA-05-4405       TCGA-05-4410       TCGA-05-4415 
"FABP12 WILD-TYPE" "FABP12 WILD-TYPE" "FABP12 WILD-TYPE" "FABP12 WILD-TYPE" 
      TCGA-05-4417       TCGA-05-4418       TCGA-05-4420       TCGA-05-4422 
"FABP12 WILD-TYPE" "FABP12 WILD-TYPE" "FABP12 WILD-TYPE" "FABP12 WILD-TYPE" 
      TCGA-05-4424       TCGA-05-4425       TCGA-05-4426       TCGA-05-4427 
"FABP12 WILD-TYPE" "FABP12 WILD-TYPE" "FABP12 WILD-TYPE" "FABP12 WILD-TYPE" 
      TCGA-05-4430       TCGA-05-4432       TCGA-05-4433       TCGA-05-4434 
"FABP12 WILD-TYPE" "FABP12 WILD-TYPE" "FABP12 WILD-TYPE" "FABP12 WILD-TYPE" 
      TCGA-05-5420       TCGA-05-5423       TCGA-05-5425       TCGA-05-5428 
"FABP12 WILD-TYPE" "FABP12 WILD-TYPE" "FABP12 WILD-TYPE" "FABP12 WILD-TYPE" 
      TCGA-05-5429       TCGA-05-5715       TCGA-35-3615       TCGA-35-4123 
"FABP12 WILD-TYPE" "FABP12 WILD-TYPE" "FABP12 WILD-TYPE" "FABP12 WILD-TYPE" 
      TCGA-35-5375       TCGA-38-4625       TCGA-38-4626       TCGA-38-4627 
"FABP12 WILD-TYPE" "FABP12 WILD-TYPE" "FABP12 WILD-TYPE" "FABP12 WILD-TYPE" 
      TCGA-38-4628       TCGA-38-4629       TCGA-38-4630       TCGA-38-4631 
"FABP12 WILD-TYPE" "FABP12 WILD-TYPE" "FABP12 WILD-TYPE" "FABP12 WILD-TYPE" 
      TCGA-38-4632       TCGA-38-6178       TCGA-44-2655       TCGA-44-2656 
"FABP12 WILD-TYPE" "FABP12 WILD-TYPE" "FABP12 WILD-TYPE" "FABP12 WILD-TYPE" 
      TCGA-44-2657       TCGA-44-2659       TCGA-44-2661       TCGA-44-2662 
"FABP12 WILD-TYPE" "FABP12 WILD-TYPE" "FABP12 WILD-TYPE" "FABP12 WILD-TYPE" 
      TCGA-44-2665       TCGA-44-2666       TCGA-44-2668       TCGA-44-3396 
"FABP12 WILD-TYPE" "FABP12 WILD-TYPE" "FABP12 WILD-TYPE" "FABP12 WILD-TYPE" 
      TCGA-44-3398       TCGA-44-3918       TCGA-44-3919       TCGA-44-4112 
"FABP12 WILD-TYPE" "FABP12 WILD-TYPE" "FABP12 WILD-TYPE" "FABP12 WILD-TYPE" 
      TCGA-44-5643       TCGA-44-5645       TCGA-44-6144       TCGA-44-6145 
"FABP12 WILD-TYPE" "FABP12 WILD-TYPE" "FABP12 WILD-TYPE" "FABP12 WILD-TYPE" 
      TCGA-44-6146       TCGA-44-6147       TCGA-44-6148       TCGA-44-6774 
"FABP12 WILD-TYPE" "FABP12 WILD-TYPE" "FABP12 WILD-TYPE" "FABP12 WILD-TYPE" 
      TCGA-44-6775       TCGA-44-6776       TCGA-44-6777       TCGA-44-6778 
"FABP12 WILD-TYPE" "FABP12 WILD-TYPE" "FABP12 WILD-TYPE" "FABP12 WILD-TYPE" 
      TCGA-44-6779       TCGA-49-4486       TCGA-49-4487       TCGA-49-4488 
"FABP12 WILD-TYPE" "FABP12 WILD-TYPE" "FABP12 WILD-TYPE" "FABP12 WILD-TYPE" 
      TCGA-49-4490       TCGA-49-4494       TCGA-49-4501       TCGA-49-4505 
"FABP12 WILD-TYPE" "FABP12 WILD-TYPE" "FABP12 WILD-TYPE" "FABP12 WILD-TYPE" 
      TCGA-49-4506       TCGA-49-4507       TCGA-49-4510       TCGA-49-4512 
"FABP12 WILD-TYPE" "FABP12 WILD-TYPE" "FABP12 WILD-TYPE" "FABP12 WILD-TYPE" 
      TCGA-49-4514       TCGA-49-6742       TCGA-49-6743       TCGA-49-6744 
"FABP12 WILD-TYPE" "FABP12 WILD-TYPE" "FABP12 WILD-TYPE" "FABP12 WILD-TYPE" 
      TCGA-49-6745       TCGA-49-6767       TCGA-50-5044       TCGA-50-5045 
"FABP12 WILD-TYPE" "FABP12 WILD-TYPE" "FABP12 WILD-TYPE" "FABP12 WILD-TYPE" 
      TCGA-50-5049       TCGA-50-5051       TCGA-50-5055       TCGA-50-5066 
"FABP12 WILD-TYPE" "FABP12 WILD-TYPE" "FABP12 WILD-TYPE" "FABP12 WILD-TYPE" 
      TCGA-50-5068       TCGA-50-5072       TCGA-50-5930       TCGA-50-5931 
"FABP12 WILD-TYPE" "FABP12 WILD-TYPE" "FABP12 WILD-TYPE" "FABP12 WILD-TYPE" 
      TCGA-50-5932       TCGA-50-5933       TCGA-50-5935       TCGA-50-5936 
"FABP12 WILD-TYPE" "FABP12 WILD-TYPE" "FABP12 WILD-TYPE" "FABP12 WILD-TYPE" 
      TCGA-50-5939       TCGA-50-5941       TCGA-50-5942       TCGA-50-5944 
"FABP12 WILD-TYPE" "FABP12 WILD-TYPE" "FABP12 WILD-TYPE" "FABP12 WILD-TYPE" 
      TCGA-50-5946       TCGA-50-6590       TCGA-50-6591       TCGA-50-6592 
"FABP12 WILD-TYPE" "FABP12 WILD-TYPE" "FABP12 WILD-TYPE" "FABP12 WILD-TYPE" 
      TCGA-50-6594       TCGA-50-6595       TCGA-50-6597       TCGA-55-1594 
"FABP12 WILD-TYPE" "FABP12 WILD-TYPE" "FABP12 WILD-TYPE" "FABP12 WILD-TYPE" 
      TCGA-55-1596       TCGA-55-6642       TCGA-64-1676       TCGA-64-1677 
"FABP12 WILD-TYPE" "FABP12 WILD-TYPE" "FABP12 WILD-TYPE" "FABP12 WILD-TYPE" 
      TCGA-64-1678       TCGA-64-1680       TCGA-64-5774       TCGA-64-5775 
"FABP12 WILD-TYPE" "FABP12 WILD-TYPE" "FABP12 WILD-TYPE" "FABP12 WILD-TYPE" 
      TCGA-64-5778       TCGA-64-5779       TCGA-64-5781       TCGA-64-5815 
"FABP12 WILD-TYPE" "FABP12 WILD-TYPE" "FABP12 WILD-TYPE" "FABP12 WILD-TYPE" 
      TCGA-67-3770       TCGA-67-3771       TCGA-67-3772       TCGA-67-3773 
"FABP12 WILD-TYPE" "FABP12 WILD-TYPE" "FABP12 WILD-TYPE" "FABP12 WILD-TYPE" 
      TCGA-67-3774       TCGA-67-4679       TCGA-67-6215       TCGA-67-6216 
"FABP12 WILD-TYPE" "FABP12 WILD-TYPE" "FABP12 WILD-TYPE" "FABP12 WILD-TYPE" 
      TCGA-67-6217       TCGA-71-6725       TCGA-73-4658       TCGA-73-4659 
"FABP12 WILD-TYPE" "FABP12 WILD-TYPE" "FABP12 WILD-TYPE" "FABP12 WILD-TYPE" 
      TCGA-73-4662       TCGA-73-4666       TCGA-73-4668       TCGA-73-4670 
"FABP12 WILD-TYPE" "FABP12 WILD-TYPE" "FABP12 WILD-TYPE" "FABP12 WILD-TYPE" 
      TCGA-73-4675       TCGA-73-4676       TCGA-73-4677       TCGA-86-6562 
"FABP12 WILD-TYPE" "FABP12 WILD-TYPE" "FABP12 WILD-TYPE" "FABP12 WILD-TYPE" 
      TCGA-91-6828       TCGA-91-6829       TCGA-91-6831       TCGA-91-6835 
"FABP12 WILD-TYPE" "FABP12 WILD-TYPE" "FABP12 WILD-TYPE" "FABP12 WILD-TYPE" 
      TCGA-91-6836 
"FABP12 WILD-TYPE" 
D76V3, binary
[1] "tbl2"
                  cls
clus               [,1] [,2]
  FABP12 MUTATED      1    2
  FABP12 WILD-TYPE   92   77
        clus
vv       FABP12 MUTATED FABP12 WILD-TYPE
  FEMALE              1               92
  MALE                2               77
D76V4, continuous
[1] "Remove cluster labels:" "FABP12 MUTATED"        
clus
  FABP12 MUTATED FABP12 WILD-TYPE 
               1               11 
      TCGA-35-4123       TCGA-35-5375       TCGA-64-1677       TCGA-64-5778 
"FABP12 WILD-TYPE" "FABP12 WILD-TYPE" "FABP12 WILD-TYPE" "FABP12 WILD-TYPE" 
      TCGA-71-6725       TCGA-73-4659       TCGA-73-4662       TCGA-73-4666 
"FABP12 WILD-TYPE" "FABP12 WILD-TYPE" "FABP12 WILD-TYPE" "FABP12 WILD-TYPE" 
      TCGA-73-4668       TCGA-73-4676       TCGA-75-5122 
"FABP12 WILD-TYPE" "FABP12 WILD-TYPE" "FABP12 WILD-TYPE" 
D76V5, multiclass
D76V6, multiclass
    clus
vv   FABP12 MUTATED FABP12 WILD-TYPE
  T1              2               39
  T2              1              107
  T3              0               14
  T4              0                8
D76V7, multiclass
       clus
vv      FABP12 MUTATED FABP12 WILD-TYPE
  N0                 1               94
  N1                 1               36
  N2+N3              1               34
D76V8, multiclass
    clus
vv   FABP12 MUTATED FABP12 WILD-TYPE
  M0              3              134
  M1              0                9
  MX              0               22
D76V9, multiclass
     clus
vv    FABP12 MUTATED FABP12 WILD-TYPE
  I                1               87
  II               1               32
  III              1               38
  IV               0                9
D76V10, binary
[1] "tbl2"
                  cls
clus               [,1] [,2]
  FABP12 MUTATED      0    3
  FABP12 WILD-TYPE   16  153
     clus
vv    FABP12 MUTATED FABP12 WILD-TYPE
  NO               0               16
  YES              3              153
D76V11, continuous
[1] "Remove cluster labels:" "FABP12 MUTATED"        
clus
  FABP12 MUTATED FABP12 WILD-TYPE 
               2              112 
      TCGA-05-4244       TCGA-05-4249       TCGA-05-4250       TCGA-05-4382 
"FABP12 WILD-TYPE" "FABP12 WILD-TYPE" "FABP12 WILD-TYPE" "FABP12 WILD-TYPE" 
      TCGA-05-4384       TCGA-05-4389       TCGA-05-4390       TCGA-05-4395 
"FABP12 WILD-TYPE" "FABP12 WILD-TYPE" "FABP12 WILD-TYPE" "FABP12 WILD-TYPE" 
      TCGA-05-4396       TCGA-05-4397       TCGA-05-4398       TCGA-05-4402 
"FABP12 WILD-TYPE" "FABP12 WILD-TYPE" "FABP12 WILD-TYPE" "FABP12 WILD-TYPE" 
      TCGA-05-4405       TCGA-05-4410       TCGA-05-4415       TCGA-05-4417 
"FABP12 WILD-TYPE" "FABP12 WILD-TYPE" "FABP12 WILD-TYPE" "FABP12 WILD-TYPE" 
      TCGA-05-4418       TCGA-05-4420       TCGA-05-4422       TCGA-05-4424 
"FABP12 WILD-TYPE" "FABP12 WILD-TYPE" "FABP12 WILD-TYPE" "FABP12 WILD-TYPE" 
      TCGA-05-4425       TCGA-05-4426       TCGA-05-4427       TCGA-05-4430 
"FABP12 WILD-TYPE" "FABP12 WILD-TYPE" "FABP12 WILD-TYPE" "FABP12 WILD-TYPE" 
      TCGA-05-4432       TCGA-05-4433       TCGA-05-4434       TCGA-05-5420 
"FABP12 WILD-TYPE" "FABP12 WILD-TYPE" "FABP12 WILD-TYPE" "FABP12 WILD-TYPE" 
      TCGA-05-5423       TCGA-05-5425       TCGA-05-5428       TCGA-35-4123 
"FABP12 WILD-TYPE" "FABP12 WILD-TYPE" "FABP12 WILD-TYPE" "FABP12 WILD-TYPE" 
      TCGA-35-5375       TCGA-38-4625       TCGA-38-4626       TCGA-38-4629 
"FABP12 WILD-TYPE" "FABP12 WILD-TYPE" "FABP12 WILD-TYPE" "FABP12 WILD-TYPE" 
      TCGA-38-4631       TCGA-38-4632       TCGA-44-2655       TCGA-44-2656 
"FABP12 WILD-TYPE" "FABP12 WILD-TYPE" "FABP12 WILD-TYPE" "FABP12 WILD-TYPE" 
      TCGA-44-2657       TCGA-44-2659       TCGA-44-2662       TCGA-44-2666 
"FABP12 WILD-TYPE" "FABP12 WILD-TYPE" "FABP12 WILD-TYPE" "FABP12 WILD-TYPE" 
      TCGA-44-2668       TCGA-44-3396       TCGA-44-3398       TCGA-44-3918 
"FABP12 WILD-TYPE" "FABP12 WILD-TYPE" "FABP12 WILD-TYPE" "FABP12 WILD-TYPE" 
      TCGA-44-4112       TCGA-44-5643       TCGA-44-5645       TCGA-44-6144 
"FABP12 WILD-TYPE" "FABP12 WILD-TYPE" "FABP12 WILD-TYPE" "FABP12 WILD-TYPE" 
      TCGA-44-6145       TCGA-44-6146       TCGA-44-6148       TCGA-44-6774 
"FABP12 WILD-TYPE" "FABP12 WILD-TYPE" "FABP12 WILD-TYPE" "FABP12 WILD-TYPE" 
      TCGA-44-6775       TCGA-44-6776       TCGA-44-6777       TCGA-44-6778 
"FABP12 WILD-TYPE" "FABP12 WILD-TYPE" "FABP12 WILD-TYPE" "FABP12 WILD-TYPE" 
      TCGA-44-6779       TCGA-49-4486       TCGA-49-4487       TCGA-49-4490 
"FABP12 WILD-TYPE" "FABP12 WILD-TYPE" "FABP12 WILD-TYPE" "FABP12 WILD-TYPE" 
      TCGA-49-4494       TCGA-49-4505       TCGA-49-4506       TCGA-49-4507 
"FABP12 WILD-TYPE" "FABP12 WILD-TYPE" "FABP12 WILD-TYPE" "FABP12 WILD-TYPE" 
      TCGA-49-4510       TCGA-49-4514       TCGA-49-6742       TCGA-49-6743 
"FABP12 WILD-TYPE" "FABP12 WILD-TYPE" "FABP12 WILD-TYPE" "FABP12 WILD-TYPE" 
      TCGA-49-6744       TCGA-49-6745       TCGA-49-6767       TCGA-50-5051 
"FABP12 WILD-TYPE" "FABP12 WILD-TYPE" "FABP12 WILD-TYPE" "FABP12 WILD-TYPE" 
      TCGA-50-5072       TCGA-50-5931       TCGA-50-5939       TCGA-50-5941 
"FABP12 WILD-TYPE" "FABP12 WILD-TYPE" "FABP12 WILD-TYPE" "FABP12 WILD-TYPE" 
      TCGA-50-5942       TCGA-50-6590       TCGA-55-1596       TCGA-55-6543 
"FABP12 WILD-TYPE" "FABP12 WILD-TYPE" "FABP12 WILD-TYPE" "FABP12 WILD-TYPE" 
      TCGA-64-1676       TCGA-64-1677       TCGA-64-1678       TCGA-64-1680 
"FABP12 WILD-TYPE" "FABP12 WILD-TYPE" "FABP12 WILD-TYPE" "FABP12 WILD-TYPE" 
      TCGA-64-5774       TCGA-64-5775       TCGA-64-5778       TCGA-64-5779 
"FABP12 WILD-TYPE" "FABP12 WILD-TYPE" "FABP12 WILD-TYPE" "FABP12 WILD-TYPE" 
      TCGA-64-5781       TCGA-64-5815       TCGA-73-4658       TCGA-73-4659 
"FABP12 WILD-TYPE" "FABP12 WILD-TYPE" "FABP12 WILD-TYPE" "FABP12 WILD-TYPE" 
      TCGA-73-4662       TCGA-73-4666       TCGA-73-4668       TCGA-73-4670 
"FABP12 WILD-TYPE" "FABP12 WILD-TYPE" "FABP12 WILD-TYPE" "FABP12 WILD-TYPE" 
      TCGA-73-4675       TCGA-73-4676       TCGA-75-5122       TCGA-75-5126 
"FABP12 WILD-TYPE" "FABP12 WILD-TYPE" "FABP12 WILD-TYPE" "FABP12 WILD-TYPE" 
      TCGA-75-6203       TCGA-75-6206       TCGA-75-6207       TCGA-75-6211 
"FABP12 WILD-TYPE" "FABP12 WILD-TYPE" "FABP12 WILD-TYPE" "FABP12 WILD-TYPE" 
      TCGA-80-5611       TCGA-91-6829       TCGA-91-6835       TCGA-91-6836 
"FABP12 WILD-TYPE" "FABP12 WILD-TYPE" "FABP12 WILD-TYPE" "FABP12 WILD-TYPE" 
D76V12, continuous
[1] "Remove cluster labels:" "FABP12 MUTATED"        
clus
  FABP12 MUTATED FABP12 WILD-TYPE 
               2               80 
      TCGA-05-4384       TCGA-05-4390       TCGA-05-4396       TCGA-05-4403 
"FABP12 WILD-TYPE" "FABP12 WILD-TYPE" "FABP12 WILD-TYPE" "FABP12 WILD-TYPE" 
      TCGA-05-4405       TCGA-05-4410       TCGA-05-4415       TCGA-05-4417 
"FABP12 WILD-TYPE" "FABP12 WILD-TYPE" "FABP12 WILD-TYPE" "FABP12 WILD-TYPE" 
      TCGA-05-4424       TCGA-05-4427       TCGA-05-4433       TCGA-05-5420 
"FABP12 WILD-TYPE" "FABP12 WILD-TYPE" "FABP12 WILD-TYPE" "FABP12 WILD-TYPE" 
      TCGA-05-5423       TCGA-05-5425       TCGA-05-5428       TCGA-35-4123 
"FABP12 WILD-TYPE" "FABP12 WILD-TYPE" "FABP12 WILD-TYPE" "FABP12 WILD-TYPE" 
      TCGA-35-5375       TCGA-38-4629       TCGA-38-4632       TCGA-44-2655 
"FABP12 WILD-TYPE" "FABP12 WILD-TYPE" "FABP12 WILD-TYPE" "FABP12 WILD-TYPE" 
      TCGA-44-2656       TCGA-44-2657       TCGA-44-2659       TCGA-44-2662 
"FABP12 WILD-TYPE" "FABP12 WILD-TYPE" "FABP12 WILD-TYPE" "FABP12 WILD-TYPE" 
      TCGA-44-2668       TCGA-44-3398       TCGA-44-3918       TCGA-44-4112 
"FABP12 WILD-TYPE" "FABP12 WILD-TYPE" "FABP12 WILD-TYPE" "FABP12 WILD-TYPE" 
      TCGA-44-5645       TCGA-44-6145       TCGA-44-6146       TCGA-44-6147 
"FABP12 WILD-TYPE" "FABP12 WILD-TYPE" "FABP12 WILD-TYPE" "FABP12 WILD-TYPE" 
      TCGA-44-6148       TCGA-44-6775       TCGA-44-6776       TCGA-44-6777 
"FABP12 WILD-TYPE" "FABP12 WILD-TYPE" "FABP12 WILD-TYPE" "FABP12 WILD-TYPE" 
      TCGA-44-6778       TCGA-44-6779       TCGA-49-4486       TCGA-49-4488 
"FABP12 WILD-TYPE" "FABP12 WILD-TYPE" "FABP12 WILD-TYPE" "FABP12 WILD-TYPE" 
      TCGA-49-4494       TCGA-49-4505       TCGA-49-4507       TCGA-50-5051 
"FABP12 WILD-TYPE" "FABP12 WILD-TYPE" "FABP12 WILD-TYPE" "FABP12 WILD-TYPE" 
      TCGA-50-5072       TCGA-50-5939       TCGA-50-5942       TCGA-50-5946 
"FABP12 WILD-TYPE" "FABP12 WILD-TYPE" "FABP12 WILD-TYPE" "FABP12 WILD-TYPE" 
      TCGA-50-6590       TCGA-50-6594       TCGA-50-6595       TCGA-55-1592 
"FABP12 WILD-TYPE" "FABP12 WILD-TYPE" "FABP12 WILD-TYPE" "FABP12 WILD-TYPE" 
      TCGA-55-1595       TCGA-55-6543       TCGA-55-6712       TCGA-64-1678 
"FABP12 WILD-TYPE" "FABP12 WILD-TYPE" "FABP12 WILD-TYPE" "FABP12 WILD-TYPE" 
      TCGA-64-1680       TCGA-64-5774       TCGA-64-5778       TCGA-64-5779 
"FABP12 WILD-TYPE" "FABP12 WILD-TYPE" "FABP12 WILD-TYPE" "FABP12 WILD-TYPE" 
      TCGA-64-5781       TCGA-64-5815       TCGA-67-6217       TCGA-73-4659 
"FABP12 WILD-TYPE" "FABP12 WILD-TYPE" "FABP12 WILD-TYPE" "FABP12 WILD-TYPE" 
      TCGA-73-4662       TCGA-73-4666       TCGA-73-4668       TCGA-73-4670 
"FABP12 WILD-TYPE" "FABP12 WILD-TYPE" "FABP12 WILD-TYPE" "FABP12 WILD-TYPE" 
      TCGA-73-4675       TCGA-73-4676       TCGA-73-4677       TCGA-75-5122 
"FABP12 WILD-TYPE" "FABP12 WILD-TYPE" "FABP12 WILD-TYPE" "FABP12 WILD-TYPE" 
      TCGA-75-5126       TCGA-75-5146       TCGA-75-6206       TCGA-75-6207 
"FABP12 WILD-TYPE" "FABP12 WILD-TYPE" "FABP12 WILD-TYPE" "FABP12 WILD-TYPE" 
      TCGA-80-5611       TCGA-91-6828       TCGA-91-6829       TCGA-91-6835 
"FABP12 WILD-TYPE" "FABP12 WILD-TYPE" "FABP12 WILD-TYPE" "FABP12 WILD-TYPE" 
D76V13, multiclass
                                             clus
vv                                            FABP12 MUTATED FABP12 WILD-TYPE
  CURRENT REFORMED SMOKER FOR < OR = 15 YEARS              2               60
  CURRENT REFORMED SMOKER FOR > 15 YEARS                   1               45
  CURRENT SMOKER                                           0               28
  LIFELONG NON-SMOKER                                      0               24
D76V14, continuous
[1] "Remove cluster labels:" "FABP12 MUTATED"        
clus
  FABP12 MUTATED FABP12 WILD-TYPE 
               1               67 
      TCGA-05-4384       TCGA-05-4390       TCGA-05-4396       TCGA-05-4405 
"FABP12 WILD-TYPE" "FABP12 WILD-TYPE" "FABP12 WILD-TYPE" "FABP12 WILD-TYPE" 
      TCGA-05-4410       TCGA-05-4415       TCGA-05-4417       TCGA-05-4424 
"FABP12 WILD-TYPE" "FABP12 WILD-TYPE" "FABP12 WILD-TYPE" "FABP12 WILD-TYPE" 
      TCGA-05-4427       TCGA-05-4433       TCGA-05-5420       TCGA-05-5423 
"FABP12 WILD-TYPE" "FABP12 WILD-TYPE" "FABP12 WILD-TYPE" "FABP12 WILD-TYPE" 
      TCGA-05-5425       TCGA-05-5428       TCGA-35-4123       TCGA-35-5375 
"FABP12 WILD-TYPE" "FABP12 WILD-TYPE" "FABP12 WILD-TYPE" "FABP12 WILD-TYPE" 
      TCGA-38-4625       TCGA-38-4626       TCGA-44-2655       TCGA-44-2656 
"FABP12 WILD-TYPE" "FABP12 WILD-TYPE" "FABP12 WILD-TYPE" "FABP12 WILD-TYPE" 
      TCGA-44-2657       TCGA-44-2659       TCGA-44-2662       TCGA-44-2666 
"FABP12 WILD-TYPE" "FABP12 WILD-TYPE" "FABP12 WILD-TYPE" "FABP12 WILD-TYPE" 
      TCGA-44-2668       TCGA-44-3396       TCGA-44-3398       TCGA-44-3918 
"FABP12 WILD-TYPE" "FABP12 WILD-TYPE" "FABP12 WILD-TYPE" "FABP12 WILD-TYPE" 
      TCGA-44-4112       TCGA-44-5645       TCGA-44-6144       TCGA-44-6145 
"FABP12 WILD-TYPE" "FABP12 WILD-TYPE" "FABP12 WILD-TYPE" "FABP12 WILD-TYPE" 
      TCGA-44-6147       TCGA-44-6148       TCGA-44-6774       TCGA-44-6775 
"FABP12 WILD-TYPE" "FABP12 WILD-TYPE" "FABP12 WILD-TYPE" "FABP12 WILD-TYPE" 
      TCGA-44-6776       TCGA-44-6777       TCGA-44-6778       TCGA-44-6779 
"FABP12 WILD-TYPE" "FABP12 WILD-TYPE" "FABP12 WILD-TYPE" "FABP12 WILD-TYPE" 
      TCGA-49-4486       TCGA-49-4494       TCGA-49-4505       TCGA-55-1592 
"FABP12 WILD-TYPE" "FABP12 WILD-TYPE" "FABP12 WILD-TYPE" "FABP12 WILD-TYPE" 
      TCGA-55-1594       TCGA-55-1595       TCGA-55-1596       TCGA-55-5899 
"FABP12 WILD-TYPE" "FABP12 WILD-TYPE" "FABP12 WILD-TYPE" "FABP12 WILD-TYPE" 
      TCGA-55-6642       TCGA-55-6712       TCGA-64-1677       TCGA-64-1678 
"FABP12 WILD-TYPE" "FABP12 WILD-TYPE" "FABP12 WILD-TYPE" "FABP12 WILD-TYPE" 
      TCGA-64-1680       TCGA-64-5774       TCGA-64-5775       TCGA-64-5778 
"FABP12 WILD-TYPE" "FABP12 WILD-TYPE" "FABP12 WILD-TYPE" "FABP12 WILD-TYPE" 
      TCGA-64-5779       TCGA-64-5781       TCGA-73-4659       TCGA-73-4662 
"FABP12 WILD-TYPE" "FABP12 WILD-TYPE" "FABP12 WILD-TYPE" "FABP12 WILD-TYPE" 
      TCGA-73-4666       TCGA-73-4668       TCGA-73-4670       TCGA-73-4675 
"FABP12 WILD-TYPE" "FABP12 WILD-TYPE" "FABP12 WILD-TYPE" "FABP12 WILD-TYPE" 
      TCGA-73-4676       TCGA-91-6829       TCGA-91-6836 
"FABP12 WILD-TYPE" "FABP12 WILD-TYPE" "FABP12 WILD-TYPE" 

Clustering(77) Variable = FLI1 MUTATION ANALYSIS
D77V1, survival
                sevent
clus2             0  1
  FLI1 MUTATED    5  1
  FLI1 WILD-TYPE 94 49
  FLI1 MUTATED FLI1 WILD-TYPE 
             6            143 
  FLI1 MUTATED FLI1 WILD-TYPE 
             1             49 
$`FLI1 MUTATED`
TCGA-05-4420 TCGA-05-4424 TCGA-44-2661 TCGA-44-3398 TCGA-44-3918 TCGA-50-5045 
       29.95        30.02         3.39         8.32         6.44        71.47 

$`FLI1 WILD-TYPE`
TCGA-05-4249 TCGA-05-4250 TCGA-05-4382 TCGA-05-4384 TCGA-05-4390 TCGA-05-4396 
       38.07         3.98        19.92        14.01        37.02         9.96 
TCGA-05-4397 TCGA-05-4398 TCGA-05-4402 TCGA-05-4405 TCGA-05-4415 TCGA-05-4417 
       24.03        47.05         8.02        20.05         2.96        14.93 
TCGA-05-4418 TCGA-05-4426 TCGA-05-4427 TCGA-05-4430 TCGA-05-4432 TCGA-05-4433 
        8.98        26.01        26.01        25.02        25.02        24.00 
TCGA-05-4434 TCGA-05-5420 TCGA-05-5423 TCGA-05-5425 TCGA-05-5429 TCGA-05-5715 
       15.02         1.02         4.96         2.96         0.99         2.04 
TCGA-35-3615 TCGA-35-4122 TCGA-35-4123 TCGA-35-5375 TCGA-38-4625 TCGA-38-4626 
        0.46         7.36         5.95         8.68        47.61        85.32 
TCGA-38-4627 TCGA-38-4628 TCGA-38-4629 TCGA-38-4630 TCGA-38-4631 TCGA-38-4632 
       37.71        49.02        28.37        35.28        11.64        44.61 
TCGA-38-6178 TCGA-44-2655 TCGA-44-2656 TCGA-44-2657 TCGA-44-2659 TCGA-44-2662 
        5.19        18.87        19.10        13.15        17.39        15.78 
TCGA-44-2665 TCGA-44-2666 TCGA-44-2668 TCGA-44-3396 TCGA-44-3919 TCGA-44-4112 
       13.15         3.19         8.09        10.22         6.21         4.60 
TCGA-44-5643 TCGA-44-5645 TCGA-44-6144 TCGA-44-6145 TCGA-44-6146 TCGA-44-6147 
        3.48         6.84         0.30         3.35         9.93         7.76 
TCGA-44-6148 TCGA-44-6774 TCGA-44-6775 TCGA-44-6776 TCGA-44-6777 TCGA-44-6778 
        3.12         5.42         2.70        63.72        32.45        36.49 
TCGA-44-6779 TCGA-49-4486 TCGA-49-4487 TCGA-49-4488 TCGA-49-4490 TCGA-49-4494 
       16.41        76.21        28.11        28.57        12.66        35.54 
TCGA-49-4501 TCGA-49-4505 TCGA-49-4506 TCGA-49-4507 TCGA-49-4510 TCGA-49-4512 
       46.72        14.07        32.84         8.81        29.46        29.75 
TCGA-49-4514 TCGA-49-6742 TCGA-49-6743 TCGA-49-6744 TCGA-49-6745 TCGA-50-5044 
       43.20        15.02        12.13        12.99         4.93        20.48 
TCGA-50-5049 TCGA-50-5051 TCGA-50-5055 TCGA-50-5066 TCGA-50-5068 TCGA-50-5072 
       48.82        14.96        25.81         9.76        49.28         8.05 
TCGA-50-5930 TCGA-50-5931 TCGA-50-5932 TCGA-50-5933 TCGA-50-5935 TCGA-50-5936 
        9.27         8.78        35.87        77.88        21.47         8.45 
TCGA-50-5939 TCGA-50-5941 TCGA-50-5942 TCGA-50-5944 TCGA-50-5946 TCGA-50-6590 
       15.12         9.37         4.44        12.26        11.47        42.31 
TCGA-50-6591 TCGA-50-6592 TCGA-50-6593 TCGA-50-6594 TCGA-50-6595 TCGA-50-6597 
        3.88        25.51        11.05        12.16         6.21        33.37 
TCGA-55-1592 TCGA-55-1594 TCGA-55-1595 TCGA-55-1596 TCGA-55-5899 TCGA-55-6543 
       23.05        38.73        48.62        45.17         2.86         0.07 
TCGA-55-6642 TCGA-55-6712 TCGA-64-1676 TCGA-64-1677 TCGA-64-1678 TCGA-64-1680 
       32.61         0.79        56.81        20.65        39.09        37.02 
TCGA-64-5774 TCGA-64-5775 TCGA-64-5778 TCGA-64-5779 TCGA-64-5781 TCGA-64-5815 
       83.84         0.10        30.44        16.67        39.52         7.33 
TCGA-67-3770 TCGA-67-3771 TCGA-67-3772 TCGA-67-3773 TCGA-67-3774 TCGA-67-6215 
        0.99         1.97         0.59         2.04         0.59         0.89 
TCGA-67-6216 TCGA-67-6217 TCGA-71-6725 TCGA-73-4658 TCGA-73-4659 TCGA-73-4662 
        0.69        13.87         2.01        52.57        23.38        29.95 
TCGA-73-4666 TCGA-73-4668 TCGA-73-4670 TCGA-73-4675 TCGA-73-4676 TCGA-73-4677 
       20.28        15.35         0.46         1.32         4.01         1.25 
TCGA-91-6828 TCGA-91-6829 TCGA-91-6831 TCGA-91-6835 TCGA-91-6836 
        1.22        41.33         1.28         1.15         0.36 

  FLI1 MUTATED FLI1 WILD-TYPE 
          3.39           0.07 
  FLI1 MUTATED FLI1 WILD-TYPE 
         71.47          85.32 
  FLI1 MUTATED FLI1 WILD-TYPE 
        19.135         13.870 
[1] "3.4 - 71.5 (19.1)" "0.1 - 85.3 (13.9)"
    TCGA-05-4249     TCGA-05-4250     TCGA-05-4382     TCGA-05-4384 
"FLI1 WILD-TYPE" "FLI1 WILD-TYPE" "FLI1 WILD-TYPE" "FLI1 WILD-TYPE" 
    TCGA-05-4390     TCGA-05-4396     TCGA-05-4397     TCGA-05-4398 
"FLI1 WILD-TYPE" "FLI1 WILD-TYPE" "FLI1 WILD-TYPE" "FLI1 WILD-TYPE" 
    TCGA-05-4402     TCGA-05-4405     TCGA-05-4415     TCGA-05-4417 
"FLI1 WILD-TYPE" "FLI1 WILD-TYPE" "FLI1 WILD-TYPE" "FLI1 WILD-TYPE" 
    TCGA-05-4418     TCGA-05-4420     TCGA-05-4424     TCGA-05-4426 
"FLI1 WILD-TYPE"   "FLI1 MUTATED"   "FLI1 MUTATED" "FLI1 WILD-TYPE" 
    TCGA-05-4427     TCGA-05-4430     TCGA-05-4432     TCGA-05-4433 
"FLI1 WILD-TYPE" "FLI1 WILD-TYPE" "FLI1 WILD-TYPE" "FLI1 WILD-TYPE" 
    TCGA-05-4434     TCGA-05-5420     TCGA-05-5423     TCGA-05-5425 
"FLI1 WILD-TYPE" "FLI1 WILD-TYPE" "FLI1 WILD-TYPE" "FLI1 WILD-TYPE" 
    TCGA-05-5429     TCGA-05-5715     TCGA-35-3615     TCGA-35-4122 
"FLI1 WILD-TYPE" "FLI1 WILD-TYPE" "FLI1 WILD-TYPE" "FLI1 WILD-TYPE" 
    TCGA-35-4123     TCGA-35-5375     TCGA-38-4625     TCGA-38-4626 
"FLI1 WILD-TYPE" "FLI1 WILD-TYPE" "FLI1 WILD-TYPE" "FLI1 WILD-TYPE" 
    TCGA-38-4627     TCGA-38-4628     TCGA-38-4629     TCGA-38-4630 
"FLI1 WILD-TYPE" "FLI1 WILD-TYPE" "FLI1 WILD-TYPE" "FLI1 WILD-TYPE" 
    TCGA-38-4631     TCGA-38-4632     TCGA-38-6178     TCGA-44-2655 
"FLI1 WILD-TYPE" "FLI1 WILD-TYPE" "FLI1 WILD-TYPE" "FLI1 WILD-TYPE" 
    TCGA-44-2656     TCGA-44-2657     TCGA-44-2659     TCGA-44-2661 
"FLI1 WILD-TYPE" "FLI1 WILD-TYPE" "FLI1 WILD-TYPE"   "FLI1 MUTATED" 
    TCGA-44-2662     TCGA-44-2665     TCGA-44-2666     TCGA-44-2668 
"FLI1 WILD-TYPE" "FLI1 WILD-TYPE" "FLI1 WILD-TYPE" "FLI1 WILD-TYPE" 
    TCGA-44-3396     TCGA-44-3398     TCGA-44-3918     TCGA-44-3919 
"FLI1 WILD-TYPE"   "FLI1 MUTATED"   "FLI1 MUTATED" "FLI1 WILD-TYPE" 
    TCGA-44-4112     TCGA-44-5643     TCGA-44-5645     TCGA-44-6144 
"FLI1 WILD-TYPE" "FLI1 WILD-TYPE" "FLI1 WILD-TYPE" "FLI1 WILD-TYPE" 
    TCGA-44-6145     TCGA-44-6146     TCGA-44-6147     TCGA-44-6148 
"FLI1 WILD-TYPE" "FLI1 WILD-TYPE" "FLI1 WILD-TYPE" "FLI1 WILD-TYPE" 
    TCGA-44-6774     TCGA-44-6775     TCGA-44-6776     TCGA-44-6777 
"FLI1 WILD-TYPE" "FLI1 WILD-TYPE" "FLI1 WILD-TYPE" "FLI1 WILD-TYPE" 
    TCGA-44-6778     TCGA-44-6779     TCGA-49-4486     TCGA-49-4487 
"FLI1 WILD-TYPE" "FLI1 WILD-TYPE" "FLI1 WILD-TYPE" "FLI1 WILD-TYPE" 
    TCGA-49-4488     TCGA-49-4490     TCGA-49-4494     TCGA-49-4501 
"FLI1 WILD-TYPE" "FLI1 WILD-TYPE" "FLI1 WILD-TYPE" "FLI1 WILD-TYPE" 
    TCGA-49-4505     TCGA-49-4506     TCGA-49-4507     TCGA-49-4510 
"FLI1 WILD-TYPE" "FLI1 WILD-TYPE" "FLI1 WILD-TYPE" "FLI1 WILD-TYPE" 
    TCGA-49-4512     TCGA-49-4514     TCGA-49-6742     TCGA-49-6743 
"FLI1 WILD-TYPE" "FLI1 WILD-TYPE" "FLI1 WILD-TYPE" "FLI1 WILD-TYPE" 
    TCGA-49-6744     TCGA-49-6745     TCGA-50-5044     TCGA-50-5045 
"FLI1 WILD-TYPE" "FLI1 WILD-TYPE" "FLI1 WILD-TYPE"   "FLI1 MUTATED" 
    TCGA-50-5049     TCGA-50-5051     TCGA-50-5055     TCGA-50-5066 
"FLI1 WILD-TYPE" "FLI1 WILD-TYPE" "FLI1 WILD-TYPE" "FLI1 WILD-TYPE" 
    TCGA-50-5068     TCGA-50-5072     TCGA-50-5930     TCGA-50-5931 
"FLI1 WILD-TYPE" "FLI1 WILD-TYPE" "FLI1 WILD-TYPE" "FLI1 WILD-TYPE" 
    TCGA-50-5932     TCGA-50-5933     TCGA-50-5935     TCGA-50-5936 
"FLI1 WILD-TYPE" "FLI1 WILD-TYPE" "FLI1 WILD-TYPE" "FLI1 WILD-TYPE" 
    TCGA-50-5939     TCGA-50-5941     TCGA-50-5942     TCGA-50-5944 
"FLI1 WILD-TYPE" "FLI1 WILD-TYPE" "FLI1 WILD-TYPE" "FLI1 WILD-TYPE" 
    TCGA-50-5946     TCGA-50-6590     TCGA-50-6591     TCGA-50-6592 
"FLI1 WILD-TYPE" "FLI1 WILD-TYPE" "FLI1 WILD-TYPE" "FLI1 WILD-TYPE" 
    TCGA-50-6593     TCGA-50-6594     TCGA-50-6595     TCGA-50-6597 
"FLI1 WILD-TYPE" "FLI1 WILD-TYPE" "FLI1 WILD-TYPE" "FLI1 WILD-TYPE" 
    TCGA-55-1592     TCGA-55-1594     TCGA-55-1595     TCGA-55-1596 
"FLI1 WILD-TYPE" "FLI1 WILD-TYPE" "FLI1 WILD-TYPE" "FLI1 WILD-TYPE" 
    TCGA-55-5899     TCGA-55-6543     TCGA-55-6642     TCGA-55-6712 
"FLI1 WILD-TYPE" "FLI1 WILD-TYPE" "FLI1 WILD-TYPE" "FLI1 WILD-TYPE" 
    TCGA-64-1676     TCGA-64-1677     TCGA-64-1678     TCGA-64-1680 
"FLI1 WILD-TYPE" "FLI1 WILD-TYPE" "FLI1 WILD-TYPE" "FLI1 WILD-TYPE" 
    TCGA-64-5774     TCGA-64-5775     TCGA-64-5778     TCGA-64-5779 
"FLI1 WILD-TYPE" "FLI1 WILD-TYPE" "FLI1 WILD-TYPE" "FLI1 WILD-TYPE" 
    TCGA-64-5781     TCGA-64-5815     TCGA-67-3770     TCGA-67-3771 
"FLI1 WILD-TYPE" "FLI1 WILD-TYPE" "FLI1 WILD-TYPE" "FLI1 WILD-TYPE" 
    TCGA-67-3772     TCGA-67-3773     TCGA-67-3774     TCGA-67-6215 
"FLI1 WILD-TYPE" "FLI1 WILD-TYPE" "FLI1 WILD-TYPE" "FLI1 WILD-TYPE" 
    TCGA-67-6216     TCGA-67-6217     TCGA-71-6725     TCGA-73-4658 
"FLI1 WILD-TYPE" "FLI1 WILD-TYPE" "FLI1 WILD-TYPE" "FLI1 WILD-TYPE" 
    TCGA-73-4659     TCGA-73-4662     TCGA-73-4666     TCGA-73-4668 
"FLI1 WILD-TYPE" "FLI1 WILD-TYPE" "FLI1 WILD-TYPE" "FLI1 WILD-TYPE" 
    TCGA-73-4670     TCGA-73-4675     TCGA-73-4676     TCGA-73-4677 
"FLI1 WILD-TYPE" "FLI1 WILD-TYPE" "FLI1 WILD-TYPE" "FLI1 WILD-TYPE" 
    TCGA-91-6828     TCGA-91-6829     TCGA-91-6831     TCGA-91-6835 
"FLI1 WILD-TYPE" "FLI1 WILD-TYPE" "FLI1 WILD-TYPE" "FLI1 WILD-TYPE" 
    TCGA-91-6836 
"FLI1 WILD-TYPE" 
    TCGA-05-4249     TCGA-05-4250     TCGA-05-4382     TCGA-05-4384 
"FLI1 WILD-TYPE" "FLI1 WILD-TYPE" "FLI1 WILD-TYPE" "FLI1 WILD-TYPE" 
    TCGA-05-4390     TCGA-05-4396     TCGA-05-4397     TCGA-05-4398 
"FLI1 WILD-TYPE" "FLI1 WILD-TYPE" "FLI1 WILD-TYPE" "FLI1 WILD-TYPE" 
    TCGA-05-4402     TCGA-05-4405     TCGA-05-4415     TCGA-05-4417 
"FLI1 WILD-TYPE" "FLI1 WILD-TYPE" "FLI1 WILD-TYPE" "FLI1 WILD-TYPE" 
    TCGA-05-4418     TCGA-05-4420     TCGA-05-4424     TCGA-05-4426 
"FLI1 WILD-TYPE"   "FLI1 MUTATED"   "FLI1 MUTATED" "FLI1 WILD-TYPE" 
    TCGA-05-4427     TCGA-05-4430     TCGA-05-4432     TCGA-05-4433 
"FLI1 WILD-TYPE" "FLI1 WILD-TYPE" "FLI1 WILD-TYPE" "FLI1 WILD-TYPE" 
    TCGA-05-4434     TCGA-05-5420     TCGA-05-5423     TCGA-05-5425 
"FLI1 WILD-TYPE" "FLI1 WILD-TYPE" "FLI1 WILD-TYPE" "FLI1 WILD-TYPE" 
    TCGA-05-5429     TCGA-05-5715     TCGA-35-3615     TCGA-35-4122 
"FLI1 WILD-TYPE" "FLI1 WILD-TYPE" "FLI1 WILD-TYPE" "FLI1 WILD-TYPE" 
    TCGA-35-4123     TCGA-35-5375     TCGA-38-4625     TCGA-38-4626 
"FLI1 WILD-TYPE" "FLI1 WILD-TYPE" "FLI1 WILD-TYPE" "FLI1 WILD-TYPE" 
    TCGA-38-4627     TCGA-38-4628     TCGA-38-4629     TCGA-38-4630 
"FLI1 WILD-TYPE" "FLI1 WILD-TYPE" "FLI1 WILD-TYPE" "FLI1 WILD-TYPE" 
    TCGA-38-4631     TCGA-38-4632     TCGA-38-6178     TCGA-44-2655 
"FLI1 WILD-TYPE" "FLI1 WILD-TYPE" "FLI1 WILD-TYPE" "FLI1 WILD-TYPE" 
    TCGA-44-2656     TCGA-44-2657     TCGA-44-2659     TCGA-44-2661 
"FLI1 WILD-TYPE" "FLI1 WILD-TYPE" "FLI1 WILD-TYPE"   "FLI1 MUTATED" 
    TCGA-44-2662     TCGA-44-2665     TCGA-44-2666     TCGA-44-2668 
"FLI1 WILD-TYPE" "FLI1 WILD-TYPE" "FLI1 WILD-TYPE" "FLI1 WILD-TYPE" 
    TCGA-44-3396     TCGA-44-3398     TCGA-44-3918     TCGA-44-3919 
"FLI1 WILD-TYPE"   "FLI1 MUTATED"   "FLI1 MUTATED" "FLI1 WILD-TYPE" 
    TCGA-44-4112     TCGA-44-5643     TCGA-44-5645     TCGA-44-6144 
"FLI1 WILD-TYPE" "FLI1 WILD-TYPE" "FLI1 WILD-TYPE" "FLI1 WILD-TYPE" 
    TCGA-44-6145     TCGA-44-6146     TCGA-44-6147     TCGA-44-6148 
"FLI1 WILD-TYPE" "FLI1 WILD-TYPE" "FLI1 WILD-TYPE" "FLI1 WILD-TYPE" 
    TCGA-44-6774     TCGA-44-6775     TCGA-44-6776     TCGA-44-6777 
"FLI1 WILD-TYPE" "FLI1 WILD-TYPE" "FLI1 WILD-TYPE" "FLI1 WILD-TYPE" 
    TCGA-44-6778     TCGA-44-6779     TCGA-49-4486     TCGA-49-4487 
"FLI1 WILD-TYPE" "FLI1 WILD-TYPE" "FLI1 WILD-TYPE" "FLI1 WILD-TYPE" 
    TCGA-49-4488     TCGA-49-4490     TCGA-49-4494     TCGA-49-4501 
"FLI1 WILD-TYPE" "FLI1 WILD-TYPE" "FLI1 WILD-TYPE" "FLI1 WILD-TYPE" 
    TCGA-49-4505     TCGA-49-4506     TCGA-49-4507     TCGA-49-4510 
"FLI1 WILD-TYPE" "FLI1 WILD-TYPE" "FLI1 WILD-TYPE" "FLI1 WILD-TYPE" 
    TCGA-49-4512     TCGA-49-4514     TCGA-49-6742     TCGA-49-6743 
"FLI1 WILD-TYPE" "FLI1 WILD-TYPE" "FLI1 WILD-TYPE" "FLI1 WILD-TYPE" 
    TCGA-49-6744     TCGA-49-6745     TCGA-50-5044     TCGA-50-5045 
"FLI1 WILD-TYPE" "FLI1 WILD-TYPE" "FLI1 WILD-TYPE"   "FLI1 MUTATED" 
    TCGA-50-5049     TCGA-50-5051     TCGA-50-5055     TCGA-50-5066 
"FLI1 WILD-TYPE" "FLI1 WILD-TYPE" "FLI1 WILD-TYPE" "FLI1 WILD-TYPE" 
    TCGA-50-5068     TCGA-50-5072     TCGA-50-5930     TCGA-50-5931 
"FLI1 WILD-TYPE" "FLI1 WILD-TYPE" "FLI1 WILD-TYPE" "FLI1 WILD-TYPE" 
    TCGA-50-5932     TCGA-50-5933     TCGA-50-5935     TCGA-50-5936 
"FLI1 WILD-TYPE" "FLI1 WILD-TYPE" "FLI1 WILD-TYPE" "FLI1 WILD-TYPE" 
    TCGA-50-5939     TCGA-50-5941     TCGA-50-5942     TCGA-50-5944 
"FLI1 WILD-TYPE" "FLI1 WILD-TYPE" "FLI1 WILD-TYPE" "FLI1 WILD-TYPE" 
    TCGA-50-5946     TCGA-50-6590     TCGA-50-6591     TCGA-50-6592 
"FLI1 WILD-TYPE" "FLI1 WILD-TYPE" "FLI1 WILD-TYPE" "FLI1 WILD-TYPE" 
    TCGA-50-6593     TCGA-50-6594     TCGA-50-6595     TCGA-50-6597 
"FLI1 WILD-TYPE" "FLI1 WILD-TYPE" "FLI1 WILD-TYPE" "FLI1 WILD-TYPE" 
    TCGA-55-1592     TCGA-55-1594     TCGA-55-1595     TCGA-55-1596 
"FLI1 WILD-TYPE" "FLI1 WILD-TYPE" "FLI1 WILD-TYPE" "FLI1 WILD-TYPE" 
    TCGA-55-5899     TCGA-55-6543     TCGA-55-6642     TCGA-55-6712 
"FLI1 WILD-TYPE" "FLI1 WILD-TYPE" "FLI1 WILD-TYPE" "FLI1 WILD-TYPE" 
    TCGA-64-1676     TCGA-64-1677     TCGA-64-1678     TCGA-64-1680 
"FLI1 WILD-TYPE" "FLI1 WILD-TYPE" "FLI1 WILD-TYPE" "FLI1 WILD-TYPE" 
    TCGA-64-5774     TCGA-64-5775     TCGA-64-5778     TCGA-64-5779 
"FLI1 WILD-TYPE" "FLI1 WILD-TYPE" "FLI1 WILD-TYPE" "FLI1 WILD-TYPE" 
    TCGA-64-5781     TCGA-64-5815     TCGA-67-3770     TCGA-67-3771 
"FLI1 WILD-TYPE" "FLI1 WILD-TYPE" "FLI1 WILD-TYPE" "FLI1 WILD-TYPE" 
    TCGA-67-3772     TCGA-67-3773     TCGA-67-3774     TCGA-67-6215 
"FLI1 WILD-TYPE" "FLI1 WILD-TYPE" "FLI1 WILD-TYPE" "FLI1 WILD-TYPE" 
    TCGA-67-6216     TCGA-67-6217     TCGA-71-6725     TCGA-73-4658 
"FLI1 WILD-TYPE" "FLI1 WILD-TYPE" "FLI1 WILD-TYPE" "FLI1 WILD-TYPE" 
    TCGA-73-4659     TCGA-73-4662     TCGA-73-4666     TCGA-73-4668 
"FLI1 WILD-TYPE" "FLI1 WILD-TYPE" "FLI1 WILD-TYPE" "FLI1 WILD-TYPE" 
    TCGA-73-4670     TCGA-73-4675     TCGA-73-4676     TCGA-73-4677 
"FLI1 WILD-TYPE" "FLI1 WILD-TYPE" "FLI1 WILD-TYPE" "FLI1 WILD-TYPE" 
    TCGA-91-6828     TCGA-91-6829     TCGA-91-6831     TCGA-91-6835 
"FLI1 WILD-TYPE" "FLI1 WILD-TYPE" "FLI1 WILD-TYPE" "FLI1 WILD-TYPE" 
    TCGA-91-6836 
"FLI1 WILD-TYPE" 
    TCGA-05-4249     TCGA-05-4250     TCGA-05-4382     TCGA-05-4384 
"FLI1 WILD-TYPE" "FLI1 WILD-TYPE" "FLI1 WILD-TYPE" "FLI1 WILD-TYPE" 
    TCGA-05-4390     TCGA-05-4396     TCGA-05-4397     TCGA-05-4398 
"FLI1 WILD-TYPE" "FLI1 WILD-TYPE" "FLI1 WILD-TYPE" "FLI1 WILD-TYPE" 
    TCGA-05-4402     TCGA-05-4405     TCGA-05-4415     TCGA-05-4417 
"FLI1 WILD-TYPE" "FLI1 WILD-TYPE" "FLI1 WILD-TYPE" "FLI1 WILD-TYPE" 
    TCGA-05-4418     TCGA-05-4420     TCGA-05-4424     TCGA-05-4426 
"FLI1 WILD-TYPE"   "FLI1 MUTATED"   "FLI1 MUTATED" "FLI1 WILD-TYPE" 
    TCGA-05-4427     TCGA-05-4430     TCGA-05-4432     TCGA-05-4433 
"FLI1 WILD-TYPE" "FLI1 WILD-TYPE" "FLI1 WILD-TYPE" "FLI1 WILD-TYPE" 
    TCGA-05-4434     TCGA-05-5420     TCGA-05-5423     TCGA-05-5425 
"FLI1 WILD-TYPE" "FLI1 WILD-TYPE" "FLI1 WILD-TYPE" "FLI1 WILD-TYPE" 
    TCGA-05-5429     TCGA-05-5715     TCGA-35-3615     TCGA-35-4122 
"FLI1 WILD-TYPE" "FLI1 WILD-TYPE" "FLI1 WILD-TYPE" "FLI1 WILD-TYPE" 
    TCGA-35-4123     TCGA-35-5375     TCGA-38-4625     TCGA-38-4626 
"FLI1 WILD-TYPE" "FLI1 WILD-TYPE" "FLI1 WILD-TYPE" "FLI1 WILD-TYPE" 
    TCGA-38-4627     TCGA-38-4628     TCGA-38-4629     TCGA-38-4630 
"FLI1 WILD-TYPE" "FLI1 WILD-TYPE" "FLI1 WILD-TYPE" "FLI1 WILD-TYPE" 
    TCGA-38-4631     TCGA-38-4632     TCGA-38-6178     TCGA-44-2655 
"FLI1 WILD-TYPE" "FLI1 WILD-TYPE" "FLI1 WILD-TYPE" "FLI1 WILD-TYPE" 
    TCGA-44-2656     TCGA-44-2657     TCGA-44-2659     TCGA-44-2661 
"FLI1 WILD-TYPE" "FLI1 WILD-TYPE" "FLI1 WILD-TYPE"   "FLI1 MUTATED" 
    TCGA-44-2662     TCGA-44-2665     TCGA-44-2666     TCGA-44-2668 
"FLI1 WILD-TYPE" "FLI1 WILD-TYPE" "FLI1 WILD-TYPE" "FLI1 WILD-TYPE" 
    TCGA-44-3396     TCGA-44-3398     TCGA-44-3918     TCGA-44-3919 
"FLI1 WILD-TYPE"   "FLI1 MUTATED"   "FLI1 MUTATED" "FLI1 WILD-TYPE" 
    TCGA-44-4112     TCGA-44-5643     TCGA-44-5645     TCGA-44-6144 
"FLI1 WILD-TYPE" "FLI1 WILD-TYPE" "FLI1 WILD-TYPE" "FLI1 WILD-TYPE" 
    TCGA-44-6145     TCGA-44-6146     TCGA-44-6147     TCGA-44-6148 
"FLI1 WILD-TYPE" "FLI1 WILD-TYPE" "FLI1 WILD-TYPE" "FLI1 WILD-TYPE" 
    TCGA-44-6774     TCGA-44-6775     TCGA-44-6776     TCGA-44-6777 
"FLI1 WILD-TYPE" "FLI1 WILD-TYPE" "FLI1 WILD-TYPE" "FLI1 WILD-TYPE" 
    TCGA-44-6778     TCGA-44-6779     TCGA-49-4486     TCGA-49-4487 
"FLI1 WILD-TYPE" "FLI1 WILD-TYPE" "FLI1 WILD-TYPE" "FLI1 WILD-TYPE" 
    TCGA-49-4488     TCGA-49-4490     TCGA-49-4494     TCGA-49-4501 
"FLI1 WILD-TYPE" "FLI1 WILD-TYPE" "FLI1 WILD-TYPE" "FLI1 WILD-TYPE" 
    TCGA-49-4505     TCGA-49-4506     TCGA-49-4507     TCGA-49-4510 
"FLI1 WILD-TYPE" "FLI1 WILD-TYPE" "FLI1 WILD-TYPE" "FLI1 WILD-TYPE" 
    TCGA-49-4512     TCGA-49-4514     TCGA-49-6742     TCGA-49-6743 
"FLI1 WILD-TYPE" "FLI1 WILD-TYPE" "FLI1 WILD-TYPE" "FLI1 WILD-TYPE" 
    TCGA-49-6744     TCGA-49-6745     TCGA-50-5044     TCGA-50-5045 
"FLI1 WILD-TYPE" "FLI1 WILD-TYPE" "FLI1 WILD-TYPE"   "FLI1 MUTATED" 
    TCGA-50-5049     TCGA-50-5051     TCGA-50-5055     TCGA-50-5066 
"FLI1 WILD-TYPE" "FLI1 WILD-TYPE" "FLI1 WILD-TYPE" "FLI1 WILD-TYPE" 
    TCGA-50-5068     TCGA-50-5072     TCGA-50-5930     TCGA-50-5931 
"FLI1 WILD-TYPE" "FLI1 WILD-TYPE" "FLI1 WILD-TYPE" "FLI1 WILD-TYPE" 
    TCGA-50-5932     TCGA-50-5933     TCGA-50-5935     TCGA-50-5936 
"FLI1 WILD-TYPE" "FLI1 WILD-TYPE" "FLI1 WILD-TYPE" "FLI1 WILD-TYPE" 
    TCGA-50-5939     TCGA-50-5941     TCGA-50-5942     TCGA-50-5944 
"FLI1 WILD-TYPE" "FLI1 WILD-TYPE" "FLI1 WILD-TYPE" "FLI1 WILD-TYPE" 
    TCGA-50-5946     TCGA-50-6590     TCGA-50-6591     TCGA-50-6592 
"FLI1 WILD-TYPE" "FLI1 WILD-TYPE" "FLI1 WILD-TYPE" "FLI1 WILD-TYPE" 
    TCGA-50-6593     TCGA-50-6594     TCGA-50-6595     TCGA-50-6597 
"FLI1 WILD-TYPE" "FLI1 WILD-TYPE" "FLI1 WILD-TYPE" "FLI1 WILD-TYPE" 
    TCGA-55-1592     TCGA-55-1594     TCGA-55-1595     TCGA-55-1596 
"FLI1 WILD-TYPE" "FLI1 WILD-TYPE" "FLI1 WILD-TYPE" "FLI1 WILD-TYPE" 
    TCGA-55-5899     TCGA-55-6543     TCGA-55-6642     TCGA-55-6712 
"FLI1 WILD-TYPE" "FLI1 WILD-TYPE" "FLI1 WILD-TYPE" "FLI1 WILD-TYPE" 
    TCGA-64-1676     TCGA-64-1677     TCGA-64-1678     TCGA-64-1680 
"FLI1 WILD-TYPE" "FLI1 WILD-TYPE" "FLI1 WILD-TYPE" "FLI1 WILD-TYPE" 
    TCGA-64-5774     TCGA-64-5775     TCGA-64-5778     TCGA-64-5779 
"FLI1 WILD-TYPE" "FLI1 WILD-TYPE" "FLI1 WILD-TYPE" "FLI1 WILD-TYPE" 
    TCGA-64-5781     TCGA-64-5815     TCGA-67-3770     TCGA-67-3771 
"FLI1 WILD-TYPE" "FLI1 WILD-TYPE" "FLI1 WILD-TYPE" "FLI1 WILD-TYPE" 
    TCGA-67-3772     TCGA-67-3773     TCGA-67-3774     TCGA-67-6215 
"FLI1 WILD-TYPE" "FLI1 WILD-TYPE" "FLI1 WILD-TYPE" "FLI1 WILD-TYPE" 
    TCGA-67-6216     TCGA-67-6217     TCGA-71-6725     TCGA-73-4658 
"FLI1 WILD-TYPE" "FLI1 WILD-TYPE" "FLI1 WILD-TYPE" "FLI1 WILD-TYPE" 
    TCGA-73-4659     TCGA-73-4662     TCGA-73-4666     TCGA-73-4668 
"FLI1 WILD-TYPE" "FLI1 WILD-TYPE" "FLI1 WILD-TYPE" "FLI1 WILD-TYPE" 
    TCGA-73-4670     TCGA-73-4675     TCGA-73-4676     TCGA-73-4677 
"FLI1 WILD-TYPE" "FLI1 WILD-TYPE" "FLI1 WILD-TYPE" "FLI1 WILD-TYPE" 
    TCGA-91-6828     TCGA-91-6829     TCGA-91-6831     TCGA-91-6835 
"FLI1 WILD-TYPE" "FLI1 WILD-TYPE" "FLI1 WILD-TYPE" "FLI1 WILD-TYPE" 
    TCGA-91-6836 
"FLI1 WILD-TYPE" 
[1] "hr=" "2.7"
D77V2, continuous
D77V3, binary
[1] "tbl2"
                cls
clus             [,1] [,2]
  FLI1 MUTATED      4    2
  FLI1 WILD-TYPE   89   77
        clus
vv       FLI1 MUTATED FLI1 WILD-TYPE
  FEMALE            4             89
  MALE              2             77
D77V4, continuous
D77V5, multiclass
D77V6, multiclass
    clus
vv   FLI1 MUTATED FLI1 WILD-TYPE
  T1            3             38
  T2            2            106
  T3            1             13
  T4            0              8
D77V7, multiclass
       clus
vv      FLI1 MUTATED FLI1 WILD-TYPE
  N0               5             90
  N1               1             36
  N2+N3            0             35
D77V8, multiclass
    clus
vv   FLI1 MUTATED FLI1 WILD-TYPE
  M0            6            131
  M1            0              9
  MX            0             22
D77V9, multiclass
     clus
vv    FLI1 MUTATED FLI1 WILD-TYPE
  I              5             83
  II             1             32
  III            0             39
  IV             0              9
D77V10, binary
[1] "tbl2"
                cls
clus             [,1] [,2]
  FLI1 MUTATED      1    5
  FLI1 WILD-TYPE   15  151
     clus
vv    FLI1 MUTATED FLI1 WILD-TYPE
  NO             1             15
  YES            5            151
D77V11, continuous
D77V12, continuous
D77V13, multiclass
                                             clus
vv                                            FLI1 MUTATED FLI1 WILD-TYPE
  CURRENT REFORMED SMOKER FOR < OR = 15 YEARS            2             60
  CURRENT REFORMED SMOKER FOR > 15 YEARS                 1             45
  CURRENT SMOKER                                         1             27
  LIFELONG NON-SMOKER                                    1             23
D77V14, continuous

Clustering(78) Variable = OR5D16 MUTATION ANALYSIS
D78V1, survival
                  sevent
clus2               0  1
  OR5D16 MUTATED    5  2
  OR5D16 WILD-TYPE 94 48
  OR5D16 MUTATED OR5D16 WILD-TYPE 
               7              142 
  OR5D16 MUTATED OR5D16 WILD-TYPE 
               2               48 
$`OR5D16 MUTATED`
TCGA-05-4382 TCGA-05-4396 TCGA-05-4427 TCGA-49-4494 TCGA-55-5899 TCGA-64-1676 
       19.92         9.96        26.01        35.54         2.86        56.81 
TCGA-91-6836 
        0.36 

$`OR5D16 WILD-TYPE`
TCGA-05-4249 TCGA-05-4250 TCGA-05-4384 TCGA-05-4390 TCGA-05-4397 TCGA-05-4398 
       38.07         3.98        14.01        37.02        24.03        47.05 
TCGA-05-4402 TCGA-05-4405 TCGA-05-4415 TCGA-05-4417 TCGA-05-4418 TCGA-05-4420 
        8.02        20.05         2.96        14.93         8.98        29.95 
TCGA-05-4424 TCGA-05-4426 TCGA-05-4430 TCGA-05-4432 TCGA-05-4433 TCGA-05-4434 
       30.02        26.01        25.02        25.02        24.00        15.02 
TCGA-05-5420 TCGA-05-5423 TCGA-05-5425 TCGA-05-5429 TCGA-05-5715 TCGA-35-3615 
        1.02         4.96         2.96         0.99         2.04         0.46 
TCGA-35-4122 TCGA-35-4123 TCGA-35-5375 TCGA-38-4625 TCGA-38-4626 TCGA-38-4627 
        7.36         5.95         8.68        47.61        85.32        37.71 
TCGA-38-4628 TCGA-38-4629 TCGA-38-4630 TCGA-38-4631 TCGA-38-4632 TCGA-38-6178 
       49.02        28.37        35.28        11.64        44.61         5.19 
TCGA-44-2655 TCGA-44-2656 TCGA-44-2657 TCGA-44-2659 TCGA-44-2661 TCGA-44-2662 
       18.87        19.10        13.15        17.39         3.39        15.78 
TCGA-44-2665 TCGA-44-2666 TCGA-44-2668 TCGA-44-3396 TCGA-44-3398 TCGA-44-3918 
       13.15         3.19         8.09        10.22         8.32         6.44 
TCGA-44-3919 TCGA-44-4112 TCGA-44-5643 TCGA-44-5645 TCGA-44-6144 TCGA-44-6145 
        6.21         4.60         3.48         6.84         0.30         3.35 
TCGA-44-6146 TCGA-44-6147 TCGA-44-6148 TCGA-44-6774 TCGA-44-6775 TCGA-44-6776 
        9.93         7.76         3.12         5.42         2.70        63.72 
TCGA-44-6777 TCGA-44-6778 TCGA-44-6779 TCGA-49-4486 TCGA-49-4487 TCGA-49-4488 
       32.45        36.49        16.41        76.21        28.11        28.57 
TCGA-49-4490 TCGA-49-4501 TCGA-49-4505 TCGA-49-4506 TCGA-49-4507 TCGA-49-4510 
       12.66        46.72        14.07        32.84         8.81        29.46 
TCGA-49-4512 TCGA-49-4514 TCGA-49-6742 TCGA-49-6743 TCGA-49-6744 TCGA-49-6745 
       29.75        43.20        15.02        12.13        12.99         4.93 
TCGA-50-5044 TCGA-50-5045 TCGA-50-5049 TCGA-50-5051 TCGA-50-5055 TCGA-50-5066 
       20.48        71.47        48.82        14.96        25.81         9.76 
TCGA-50-5068 TCGA-50-5072 TCGA-50-5930 TCGA-50-5931 TCGA-50-5932 TCGA-50-5933 
       49.28         8.05         9.27         8.78        35.87        77.88 
TCGA-50-5935 TCGA-50-5936 TCGA-50-5939 TCGA-50-5941 TCGA-50-5942 TCGA-50-5944 
       21.47         8.45        15.12         9.37         4.44        12.26 
TCGA-50-5946 TCGA-50-6590 TCGA-50-6591 TCGA-50-6592 TCGA-50-6593 TCGA-50-6594 
       11.47        42.31         3.88        25.51        11.05        12.16 
TCGA-50-6595 TCGA-50-6597 TCGA-55-1592 TCGA-55-1594 TCGA-55-1595 TCGA-55-1596 
        6.21        33.37        23.05        38.73        48.62        45.17 
TCGA-55-6543 TCGA-55-6642 TCGA-55-6712 TCGA-64-1677 TCGA-64-1678 TCGA-64-1680 
        0.07        32.61         0.79        20.65        39.09        37.02 
TCGA-64-5774 TCGA-64-5775 TCGA-64-5778 TCGA-64-5779 TCGA-64-5781 TCGA-64-5815 
       83.84         0.10        30.44        16.67        39.52         7.33 
TCGA-67-3770 TCGA-67-3771 TCGA-67-3772 TCGA-67-3773 TCGA-67-3774 TCGA-67-6215 
        0.99         1.97         0.59         2.04         0.59         0.89 
TCGA-67-6216 TCGA-67-6217 TCGA-71-6725 TCGA-73-4658 TCGA-73-4659 TCGA-73-4662 
        0.69        13.87         2.01        52.57        23.38        29.95 
TCGA-73-4666 TCGA-73-4668 TCGA-73-4670 TCGA-73-4675 TCGA-73-4676 TCGA-73-4677 
       20.28        15.35         0.46         1.32         4.01         1.25 
TCGA-91-6828 TCGA-91-6829 TCGA-91-6831 TCGA-91-6835 
        1.22        41.33         1.28         1.15 

  OR5D16 MUTATED OR5D16 WILD-TYPE 
            0.36             0.07 
  OR5D16 MUTATED OR5D16 WILD-TYPE 
           56.81            85.32 
  OR5D16 MUTATED OR5D16 WILD-TYPE 
           19.92            13.51 
[1] "0.4 - 56.8 (19.9)" "0.1 - 85.3 (13.5)"
      TCGA-05-4249       TCGA-05-4250       TCGA-05-4382       TCGA-05-4384 
"OR5D16 WILD-TYPE" "OR5D16 WILD-TYPE"   "OR5D16 MUTATED" "OR5D16 WILD-TYPE" 
      TCGA-05-4390       TCGA-05-4396       TCGA-05-4397       TCGA-05-4398 
"OR5D16 WILD-TYPE"   "OR5D16 MUTATED" "OR5D16 WILD-TYPE" "OR5D16 WILD-TYPE" 
      TCGA-05-4402       TCGA-05-4405       TCGA-05-4415       TCGA-05-4417 
"OR5D16 WILD-TYPE" "OR5D16 WILD-TYPE" "OR5D16 WILD-TYPE" "OR5D16 WILD-TYPE" 
      TCGA-05-4418       TCGA-05-4420       TCGA-05-4424       TCGA-05-4426 
"OR5D16 WILD-TYPE" "OR5D16 WILD-TYPE" "OR5D16 WILD-TYPE" "OR5D16 WILD-TYPE" 
      TCGA-05-4427       TCGA-05-4430       TCGA-05-4432       TCGA-05-4433 
  "OR5D16 MUTATED" "OR5D16 WILD-TYPE" "OR5D16 WILD-TYPE" "OR5D16 WILD-TYPE" 
      TCGA-05-4434       TCGA-05-5420       TCGA-05-5423       TCGA-05-5425 
"OR5D16 WILD-TYPE" "OR5D16 WILD-TYPE" "OR5D16 WILD-TYPE" "OR5D16 WILD-TYPE" 
      TCGA-05-5429       TCGA-05-5715       TCGA-35-3615       TCGA-35-4122 
"OR5D16 WILD-TYPE" "OR5D16 WILD-TYPE" "OR5D16 WILD-TYPE" "OR5D16 WILD-TYPE" 
      TCGA-35-4123       TCGA-35-5375       TCGA-38-4625       TCGA-38-4626 
"OR5D16 WILD-TYPE" "OR5D16 WILD-TYPE" "OR5D16 WILD-TYPE" "OR5D16 WILD-TYPE" 
      TCGA-38-4627       TCGA-38-4628       TCGA-38-4629       TCGA-38-4630 
"OR5D16 WILD-TYPE" "OR5D16 WILD-TYPE" "OR5D16 WILD-TYPE" "OR5D16 WILD-TYPE" 
      TCGA-38-4631       TCGA-38-4632       TCGA-38-6178       TCGA-44-2655 
"OR5D16 WILD-TYPE" "OR5D16 WILD-TYPE" "OR5D16 WILD-TYPE" "OR5D16 WILD-TYPE" 
      TCGA-44-2656       TCGA-44-2657       TCGA-44-2659       TCGA-44-2661 
"OR5D16 WILD-TYPE" "OR5D16 WILD-TYPE" "OR5D16 WILD-TYPE" "OR5D16 WILD-TYPE" 
      TCGA-44-2662       TCGA-44-2665       TCGA-44-2666       TCGA-44-2668 
"OR5D16 WILD-TYPE" "OR5D16 WILD-TYPE" "OR5D16 WILD-TYPE" "OR5D16 WILD-TYPE" 
      TCGA-44-3396       TCGA-44-3398       TCGA-44-3918       TCGA-44-3919 
"OR5D16 WILD-TYPE" "OR5D16 WILD-TYPE" "OR5D16 WILD-TYPE" "OR5D16 WILD-TYPE" 
      TCGA-44-4112       TCGA-44-5643       TCGA-44-5645       TCGA-44-6144 
"OR5D16 WILD-TYPE" "OR5D16 WILD-TYPE" "OR5D16 WILD-TYPE" "OR5D16 WILD-TYPE" 
      TCGA-44-6145       TCGA-44-6146       TCGA-44-6147       TCGA-44-6148 
"OR5D16 WILD-TYPE" "OR5D16 WILD-TYPE" "OR5D16 WILD-TYPE" "OR5D16 WILD-TYPE" 
      TCGA-44-6774       TCGA-44-6775       TCGA-44-6776       TCGA-44-6777 
"OR5D16 WILD-TYPE" "OR5D16 WILD-TYPE" "OR5D16 WILD-TYPE" "OR5D16 WILD-TYPE" 
      TCGA-44-6778       TCGA-44-6779       TCGA-49-4486       TCGA-49-4487 
"OR5D16 WILD-TYPE" "OR5D16 WILD-TYPE" "OR5D16 WILD-TYPE" "OR5D16 WILD-TYPE" 
      TCGA-49-4488       TCGA-49-4490       TCGA-49-4494       TCGA-49-4501 
"OR5D16 WILD-TYPE" "OR5D16 WILD-TYPE"   "OR5D16 MUTATED" "OR5D16 WILD-TYPE" 
      TCGA-49-4505       TCGA-49-4506       TCGA-49-4507       TCGA-49-4510 
"OR5D16 WILD-TYPE" "OR5D16 WILD-TYPE" "OR5D16 WILD-TYPE" "OR5D16 WILD-TYPE" 
      TCGA-49-4512       TCGA-49-4514       TCGA-49-6742       TCGA-49-6743 
"OR5D16 WILD-TYPE" "OR5D16 WILD-TYPE" "OR5D16 WILD-TYPE" "OR5D16 WILD-TYPE" 
      TCGA-49-6744       TCGA-49-6745       TCGA-50-5044       TCGA-50-5045 
"OR5D16 WILD-TYPE" "OR5D16 WILD-TYPE" "OR5D16 WILD-TYPE" "OR5D16 WILD-TYPE" 
      TCGA-50-5049       TCGA-50-5051       TCGA-50-5055       TCGA-50-5066 
"OR5D16 WILD-TYPE" "OR5D16 WILD-TYPE" "OR5D16 WILD-TYPE" "OR5D16 WILD-TYPE" 
      TCGA-50-5068       TCGA-50-5072       TCGA-50-5930       TCGA-50-5931 
"OR5D16 WILD-TYPE" "OR5D16 WILD-TYPE" "OR5D16 WILD-TYPE" "OR5D16 WILD-TYPE" 
      TCGA-50-5932       TCGA-50-5933       TCGA-50-5935       TCGA-50-5936 
"OR5D16 WILD-TYPE" "OR5D16 WILD-TYPE" "OR5D16 WILD-TYPE" "OR5D16 WILD-TYPE" 
      TCGA-50-5939       TCGA-50-5941       TCGA-50-5942       TCGA-50-5944 
"OR5D16 WILD-TYPE" "OR5D16 WILD-TYPE" "OR5D16 WILD-TYPE" "OR5D16 WILD-TYPE" 
      TCGA-50-5946       TCGA-50-6590       TCGA-50-6591       TCGA-50-6592 
"OR5D16 WILD-TYPE" "OR5D16 WILD-TYPE" "OR5D16 WILD-TYPE" "OR5D16 WILD-TYPE" 
      TCGA-50-6593       TCGA-50-6594       TCGA-50-6595       TCGA-50-6597 
"OR5D16 WILD-TYPE" "OR5D16 WILD-TYPE" "OR5D16 WILD-TYPE" "OR5D16 WILD-TYPE" 
      TCGA-55-1592       TCGA-55-1594       TCGA-55-1595       TCGA-55-1596 
"OR5D16 WILD-TYPE" "OR5D16 WILD-TYPE" "OR5D16 WILD-TYPE" "OR5D16 WILD-TYPE" 
      TCGA-55-5899       TCGA-55-6543       TCGA-55-6642       TCGA-55-6712 
  "OR5D16 MUTATED" "OR5D16 WILD-TYPE" "OR5D16 WILD-TYPE" "OR5D16 WILD-TYPE" 
      TCGA-64-1676       TCGA-64-1677       TCGA-64-1678       TCGA-64-1680 
  "OR5D16 MUTATED" "OR5D16 WILD-TYPE" "OR5D16 WILD-TYPE" "OR5D16 WILD-TYPE" 
      TCGA-64-5774       TCGA-64-5775       TCGA-64-5778       TCGA-64-5779 
"OR5D16 WILD-TYPE" "OR5D16 WILD-TYPE" "OR5D16 WILD-TYPE" "OR5D16 WILD-TYPE" 
      TCGA-64-5781       TCGA-64-5815       TCGA-67-3770       TCGA-67-3771 
"OR5D16 WILD-TYPE" "OR5D16 WILD-TYPE" "OR5D16 WILD-TYPE" "OR5D16 WILD-TYPE" 
      TCGA-67-3772       TCGA-67-3773       TCGA-67-3774       TCGA-67-6215 
"OR5D16 WILD-TYPE" "OR5D16 WILD-TYPE" "OR5D16 WILD-TYPE" "OR5D16 WILD-TYPE" 
      TCGA-67-6216       TCGA-67-6217       TCGA-71-6725       TCGA-73-4658 
"OR5D16 WILD-TYPE" "OR5D16 WILD-TYPE" "OR5D16 WILD-TYPE" "OR5D16 WILD-TYPE" 
      TCGA-73-4659       TCGA-73-4662       TCGA-73-4666       TCGA-73-4668 
"OR5D16 WILD-TYPE" "OR5D16 WILD-TYPE" "OR5D16 WILD-TYPE" "OR5D16 WILD-TYPE" 
      TCGA-73-4670       TCGA-73-4675       TCGA-73-4676       TCGA-73-4677 
"OR5D16 WILD-TYPE" "OR5D16 WILD-TYPE" "OR5D16 WILD-TYPE" "OR5D16 WILD-TYPE" 
      TCGA-91-6828       TCGA-91-6829       TCGA-91-6831       TCGA-91-6835 
"OR5D16 WILD-TYPE" "OR5D16 WILD-TYPE" "OR5D16 WILD-TYPE" "OR5D16 WILD-TYPE" 
      TCGA-91-6836 
  "OR5D16 MUTATED" 
      TCGA-05-4249       TCGA-05-4250       TCGA-05-4382       TCGA-05-4384 
"OR5D16 WILD-TYPE" "OR5D16 WILD-TYPE"   "OR5D16 MUTATED" "OR5D16 WILD-TYPE" 
      TCGA-05-4390       TCGA-05-4396       TCGA-05-4397       TCGA-05-4398 
"OR5D16 WILD-TYPE"   "OR5D16 MUTATED" "OR5D16 WILD-TYPE" "OR5D16 WILD-TYPE" 
      TCGA-05-4402       TCGA-05-4405       TCGA-05-4415       TCGA-05-4417 
"OR5D16 WILD-TYPE" "OR5D16 WILD-TYPE" "OR5D16 WILD-TYPE" "OR5D16 WILD-TYPE" 
      TCGA-05-4418       TCGA-05-4420       TCGA-05-4424       TCGA-05-4426 
"OR5D16 WILD-TYPE" "OR5D16 WILD-TYPE" "OR5D16 WILD-TYPE" "OR5D16 WILD-TYPE" 
      TCGA-05-4427       TCGA-05-4430       TCGA-05-4432       TCGA-05-4433 
  "OR5D16 MUTATED" "OR5D16 WILD-TYPE" "OR5D16 WILD-TYPE" "OR5D16 WILD-TYPE" 
      TCGA-05-4434       TCGA-05-5420       TCGA-05-5423       TCGA-05-5425 
"OR5D16 WILD-TYPE" "OR5D16 WILD-TYPE" "OR5D16 WILD-TYPE" "OR5D16 WILD-TYPE" 
      TCGA-05-5429       TCGA-05-5715       TCGA-35-3615       TCGA-35-4122 
"OR5D16 WILD-TYPE" "OR5D16 WILD-TYPE" "OR5D16 WILD-TYPE" "OR5D16 WILD-TYPE" 
      TCGA-35-4123       TCGA-35-5375       TCGA-38-4625       TCGA-38-4626 
"OR5D16 WILD-TYPE" "OR5D16 WILD-TYPE" "OR5D16 WILD-TYPE" "OR5D16 WILD-TYPE" 
      TCGA-38-4627       TCGA-38-4628       TCGA-38-4629       TCGA-38-4630 
"OR5D16 WILD-TYPE" "OR5D16 WILD-TYPE" "OR5D16 WILD-TYPE" "OR5D16 WILD-TYPE" 
      TCGA-38-4631       TCGA-38-4632       TCGA-38-6178       TCGA-44-2655 
"OR5D16 WILD-TYPE" "OR5D16 WILD-TYPE" "OR5D16 WILD-TYPE" "OR5D16 WILD-TYPE" 
      TCGA-44-2656       TCGA-44-2657       TCGA-44-2659       TCGA-44-2661 
"OR5D16 WILD-TYPE" "OR5D16 WILD-TYPE" "OR5D16 WILD-TYPE" "OR5D16 WILD-TYPE" 
      TCGA-44-2662       TCGA-44-2665       TCGA-44-2666       TCGA-44-2668 
"OR5D16 WILD-TYPE" "OR5D16 WILD-TYPE" "OR5D16 WILD-TYPE" "OR5D16 WILD-TYPE" 
      TCGA-44-3396       TCGA-44-3398       TCGA-44-3918       TCGA-44-3919 
"OR5D16 WILD-TYPE" "OR5D16 WILD-TYPE" "OR5D16 WILD-TYPE" "OR5D16 WILD-TYPE" 
      TCGA-44-4112       TCGA-44-5643       TCGA-44-5645       TCGA-44-6144 
"OR5D16 WILD-TYPE" "OR5D16 WILD-TYPE" "OR5D16 WILD-TYPE" "OR5D16 WILD-TYPE" 
      TCGA-44-6145       TCGA-44-6146       TCGA-44-6147       TCGA-44-6148 
"OR5D16 WILD-TYPE" "OR5D16 WILD-TYPE" "OR5D16 WILD-TYPE" "OR5D16 WILD-TYPE" 
      TCGA-44-6774       TCGA-44-6775       TCGA-44-6776       TCGA-44-6777 
"OR5D16 WILD-TYPE" "OR5D16 WILD-TYPE" "OR5D16 WILD-TYPE" "OR5D16 WILD-TYPE" 
      TCGA-44-6778       TCGA-44-6779       TCGA-49-4486       TCGA-49-4487 
"OR5D16 WILD-TYPE" "OR5D16 WILD-TYPE" "OR5D16 WILD-TYPE" "OR5D16 WILD-TYPE" 
      TCGA-49-4488       TCGA-49-4490       TCGA-49-4494       TCGA-49-4501 
"OR5D16 WILD-TYPE" "OR5D16 WILD-TYPE"   "OR5D16 MUTATED" "OR5D16 WILD-TYPE" 
      TCGA-49-4505       TCGA-49-4506       TCGA-49-4507       TCGA-49-4510 
"OR5D16 WILD-TYPE" "OR5D16 WILD-TYPE" "OR5D16 WILD-TYPE" "OR5D16 WILD-TYPE" 
      TCGA-49-4512       TCGA-49-4514       TCGA-49-6742       TCGA-49-6743 
"OR5D16 WILD-TYPE" "OR5D16 WILD-TYPE" "OR5D16 WILD-TYPE" "OR5D16 WILD-TYPE" 
      TCGA-49-6744       TCGA-49-6745       TCGA-50-5044       TCGA-50-5045 
"OR5D16 WILD-TYPE" "OR5D16 WILD-TYPE" "OR5D16 WILD-TYPE" "OR5D16 WILD-TYPE" 
      TCGA-50-5049       TCGA-50-5051       TCGA-50-5055       TCGA-50-5066 
"OR5D16 WILD-TYPE" "OR5D16 WILD-TYPE" "OR5D16 WILD-TYPE" "OR5D16 WILD-TYPE" 
      TCGA-50-5068       TCGA-50-5072       TCGA-50-5930       TCGA-50-5931 
"OR5D16 WILD-TYPE" "OR5D16 WILD-TYPE" "OR5D16 WILD-TYPE" "OR5D16 WILD-TYPE" 
      TCGA-50-5932       TCGA-50-5933       TCGA-50-5935       TCGA-50-5936 
"OR5D16 WILD-TYPE" "OR5D16 WILD-TYPE" "OR5D16 WILD-TYPE" "OR5D16 WILD-TYPE" 
      TCGA-50-5939       TCGA-50-5941       TCGA-50-5942       TCGA-50-5944 
"OR5D16 WILD-TYPE" "OR5D16 WILD-TYPE" "OR5D16 WILD-TYPE" "OR5D16 WILD-TYPE" 
      TCGA-50-5946       TCGA-50-6590       TCGA-50-6591       TCGA-50-6592 
"OR5D16 WILD-TYPE" "OR5D16 WILD-TYPE" "OR5D16 WILD-TYPE" "OR5D16 WILD-TYPE" 
      TCGA-50-6593       TCGA-50-6594       TCGA-50-6595       TCGA-50-6597 
"OR5D16 WILD-TYPE" "OR5D16 WILD-TYPE" "OR5D16 WILD-TYPE" "OR5D16 WILD-TYPE" 
      TCGA-55-1592       TCGA-55-1594       TCGA-55-1595       TCGA-55-1596 
"OR5D16 WILD-TYPE" "OR5D16 WILD-TYPE" "OR5D16 WILD-TYPE" "OR5D16 WILD-TYPE" 
      TCGA-55-5899       TCGA-55-6543       TCGA-55-6642       TCGA-55-6712 
  "OR5D16 MUTATED" "OR5D16 WILD-TYPE" "OR5D16 WILD-TYPE" "OR5D16 WILD-TYPE" 
      TCGA-64-1676       TCGA-64-1677       TCGA-64-1678       TCGA-64-1680 
  "OR5D16 MUTATED" "OR5D16 WILD-TYPE" "OR5D16 WILD-TYPE" "OR5D16 WILD-TYPE" 
      TCGA-64-5774       TCGA-64-5775       TCGA-64-5778       TCGA-64-5779 
"OR5D16 WILD-TYPE" "OR5D16 WILD-TYPE" "OR5D16 WILD-TYPE" "OR5D16 WILD-TYPE" 
      TCGA-64-5781       TCGA-64-5815       TCGA-67-3770       TCGA-67-3771 
"OR5D16 WILD-TYPE" "OR5D16 WILD-TYPE" "OR5D16 WILD-TYPE" "OR5D16 WILD-TYPE" 
      TCGA-67-3772       TCGA-67-3773       TCGA-67-3774       TCGA-67-6215 
"OR5D16 WILD-TYPE" "OR5D16 WILD-TYPE" "OR5D16 WILD-TYPE" "OR5D16 WILD-TYPE" 
      TCGA-67-6216       TCGA-67-6217       TCGA-71-6725       TCGA-73-4658 
"OR5D16 WILD-TYPE" "OR5D16 WILD-TYPE" "OR5D16 WILD-TYPE" "OR5D16 WILD-TYPE" 
      TCGA-73-4659       TCGA-73-4662       TCGA-73-4666       TCGA-73-4668 
"OR5D16 WILD-TYPE" "OR5D16 WILD-TYPE" "OR5D16 WILD-TYPE" "OR5D16 WILD-TYPE" 
      TCGA-73-4670       TCGA-73-4675       TCGA-73-4676       TCGA-73-4677 
"OR5D16 WILD-TYPE" "OR5D16 WILD-TYPE" "OR5D16 WILD-TYPE" "OR5D16 WILD-TYPE" 
      TCGA-91-6828       TCGA-91-6829       TCGA-91-6831       TCGA-91-6835 
"OR5D16 WILD-TYPE" "OR5D16 WILD-TYPE" "OR5D16 WILD-TYPE" "OR5D16 WILD-TYPE" 
      TCGA-91-6836 
  "OR5D16 MUTATED" 
      TCGA-05-4249       TCGA-05-4250       TCGA-05-4382       TCGA-05-4384 
"OR5D16 WILD-TYPE" "OR5D16 WILD-TYPE"   "OR5D16 MUTATED" "OR5D16 WILD-TYPE" 
      TCGA-05-4390       TCGA-05-4396       TCGA-05-4397       TCGA-05-4398 
"OR5D16 WILD-TYPE"   "OR5D16 MUTATED" "OR5D16 WILD-TYPE" "OR5D16 WILD-TYPE" 
      TCGA-05-4402       TCGA-05-4405       TCGA-05-4415       TCGA-05-4417 
"OR5D16 WILD-TYPE" "OR5D16 WILD-TYPE" "OR5D16 WILD-TYPE" "OR5D16 WILD-TYPE" 
      TCGA-05-4418       TCGA-05-4420       TCGA-05-4424       TCGA-05-4426 
"OR5D16 WILD-TYPE" "OR5D16 WILD-TYPE" "OR5D16 WILD-TYPE" "OR5D16 WILD-TYPE" 
      TCGA-05-4427       TCGA-05-4430       TCGA-05-4432       TCGA-05-4433 
  "OR5D16 MUTATED" "OR5D16 WILD-TYPE" "OR5D16 WILD-TYPE" "OR5D16 WILD-TYPE" 
      TCGA-05-4434       TCGA-05-5420       TCGA-05-5423       TCGA-05-5425 
"OR5D16 WILD-TYPE" "OR5D16 WILD-TYPE" "OR5D16 WILD-TYPE" "OR5D16 WILD-TYPE" 
      TCGA-05-5429       TCGA-05-5715       TCGA-35-3615       TCGA-35-4122 
"OR5D16 WILD-TYPE" "OR5D16 WILD-TYPE" "OR5D16 WILD-TYPE" "OR5D16 WILD-TYPE" 
      TCGA-35-4123       TCGA-35-5375       TCGA-38-4625       TCGA-38-4626 
"OR5D16 WILD-TYPE" "OR5D16 WILD-TYPE" "OR5D16 WILD-TYPE" "OR5D16 WILD-TYPE" 
      TCGA-38-4627       TCGA-38-4628       TCGA-38-4629       TCGA-38-4630 
"OR5D16 WILD-TYPE" "OR5D16 WILD-TYPE" "OR5D16 WILD-TYPE" "OR5D16 WILD-TYPE" 
      TCGA-38-4631       TCGA-38-4632       TCGA-38-6178       TCGA-44-2655 
"OR5D16 WILD-TYPE" "OR5D16 WILD-TYPE" "OR5D16 WILD-TYPE" "OR5D16 WILD-TYPE" 
      TCGA-44-2656       TCGA-44-2657       TCGA-44-2659       TCGA-44-2661 
"OR5D16 WILD-TYPE" "OR5D16 WILD-TYPE" "OR5D16 WILD-TYPE" "OR5D16 WILD-TYPE" 
      TCGA-44-2662       TCGA-44-2665       TCGA-44-2666       TCGA-44-2668 
"OR5D16 WILD-TYPE" "OR5D16 WILD-TYPE" "OR5D16 WILD-TYPE" "OR5D16 WILD-TYPE" 
      TCGA-44-3396       TCGA-44-3398       TCGA-44-3918       TCGA-44-3919 
"OR5D16 WILD-TYPE" "OR5D16 WILD-TYPE" "OR5D16 WILD-TYPE" "OR5D16 WILD-TYPE" 
      TCGA-44-4112       TCGA-44-5643       TCGA-44-5645       TCGA-44-6144 
"OR5D16 WILD-TYPE" "OR5D16 WILD-TYPE" "OR5D16 WILD-TYPE" "OR5D16 WILD-TYPE" 
      TCGA-44-6145       TCGA-44-6146       TCGA-44-6147       TCGA-44-6148 
"OR5D16 WILD-TYPE" "OR5D16 WILD-TYPE" "OR5D16 WILD-TYPE" "OR5D16 WILD-TYPE" 
      TCGA-44-6774       TCGA-44-6775       TCGA-44-6776       TCGA-44-6777 
"OR5D16 WILD-TYPE" "OR5D16 WILD-TYPE" "OR5D16 WILD-TYPE" "OR5D16 WILD-TYPE" 
      TCGA-44-6778       TCGA-44-6779       TCGA-49-4486       TCGA-49-4487 
"OR5D16 WILD-TYPE" "OR5D16 WILD-TYPE" "OR5D16 WILD-TYPE" "OR5D16 WILD-TYPE" 
      TCGA-49-4488       TCGA-49-4490       TCGA-49-4494       TCGA-49-4501 
"OR5D16 WILD-TYPE" "OR5D16 WILD-TYPE"   "OR5D16 MUTATED" "OR5D16 WILD-TYPE" 
      TCGA-49-4505       TCGA-49-4506       TCGA-49-4507       TCGA-49-4510 
"OR5D16 WILD-TYPE" "OR5D16 WILD-TYPE" "OR5D16 WILD-TYPE" "OR5D16 WILD-TYPE" 
      TCGA-49-4512       TCGA-49-4514       TCGA-49-6742       TCGA-49-6743 
"OR5D16 WILD-TYPE" "OR5D16 WILD-TYPE" "OR5D16 WILD-TYPE" "OR5D16 WILD-TYPE" 
      TCGA-49-6744       TCGA-49-6745       TCGA-50-5044       TCGA-50-5045 
"OR5D16 WILD-TYPE" "OR5D16 WILD-TYPE" "OR5D16 WILD-TYPE" "OR5D16 WILD-TYPE" 
      TCGA-50-5049       TCGA-50-5051       TCGA-50-5055       TCGA-50-5066 
"OR5D16 WILD-TYPE" "OR5D16 WILD-TYPE" "OR5D16 WILD-TYPE" "OR5D16 WILD-TYPE" 
      TCGA-50-5068       TCGA-50-5072       TCGA-50-5930       TCGA-50-5931 
"OR5D16 WILD-TYPE" "OR5D16 WILD-TYPE" "OR5D16 WILD-TYPE" "OR5D16 WILD-TYPE" 
      TCGA-50-5932       TCGA-50-5933       TCGA-50-5935       TCGA-50-5936 
"OR5D16 WILD-TYPE" "OR5D16 WILD-TYPE" "OR5D16 WILD-TYPE" "OR5D16 WILD-TYPE" 
      TCGA-50-5939       TCGA-50-5941       TCGA-50-5942       TCGA-50-5944 
"OR5D16 WILD-TYPE" "OR5D16 WILD-TYPE" "OR5D16 WILD-TYPE" "OR5D16 WILD-TYPE" 
      TCGA-50-5946       TCGA-50-6590       TCGA-50-6591       TCGA-50-6592 
"OR5D16 WILD-TYPE" "OR5D16 WILD-TYPE" "OR5D16 WILD-TYPE" "OR5D16 WILD-TYPE" 
      TCGA-50-6593       TCGA-50-6594       TCGA-50-6595       TCGA-50-6597 
"OR5D16 WILD-TYPE" "OR5D16 WILD-TYPE" "OR5D16 WILD-TYPE" "OR5D16 WILD-TYPE" 
      TCGA-55-1592       TCGA-55-1594       TCGA-55-1595       TCGA-55-1596 
"OR5D16 WILD-TYPE" "OR5D16 WILD-TYPE" "OR5D16 WILD-TYPE" "OR5D16 WILD-TYPE" 
      TCGA-55-5899       TCGA-55-6543       TCGA-55-6642       TCGA-55-6712 
  "OR5D16 MUTATED" "OR5D16 WILD-TYPE" "OR5D16 WILD-TYPE" "OR5D16 WILD-TYPE" 
      TCGA-64-1676       TCGA-64-1677       TCGA-64-1678       TCGA-64-1680 
  "OR5D16 MUTATED" "OR5D16 WILD-TYPE" "OR5D16 WILD-TYPE" "OR5D16 WILD-TYPE" 
      TCGA-64-5774       TCGA-64-5775       TCGA-64-5778       TCGA-64-5779 
"OR5D16 WILD-TYPE" "OR5D16 WILD-TYPE" "OR5D16 WILD-TYPE" "OR5D16 WILD-TYPE" 
      TCGA-64-5781       TCGA-64-5815       TCGA-67-3770       TCGA-67-3771 
"OR5D16 WILD-TYPE" "OR5D16 WILD-TYPE" "OR5D16 WILD-TYPE" "OR5D16 WILD-TYPE" 
      TCGA-67-3772       TCGA-67-3773       TCGA-67-3774       TCGA-67-6215 
"OR5D16 WILD-TYPE" "OR5D16 WILD-TYPE" "OR5D16 WILD-TYPE" "OR5D16 WILD-TYPE" 
      TCGA-67-6216       TCGA-67-6217       TCGA-71-6725       TCGA-73-4658 
"OR5D16 WILD-TYPE" "OR5D16 WILD-TYPE" "OR5D16 WILD-TYPE" "OR5D16 WILD-TYPE" 
      TCGA-73-4659       TCGA-73-4662       TCGA-73-4666       TCGA-73-4668 
"OR5D16 WILD-TYPE" "OR5D16 WILD-TYPE" "OR5D16 WILD-TYPE" "OR5D16 WILD-TYPE" 
      TCGA-73-4670       TCGA-73-4675       TCGA-73-4676       TCGA-73-4677 
"OR5D16 WILD-TYPE" "OR5D16 WILD-TYPE" "OR5D16 WILD-TYPE" "OR5D16 WILD-TYPE" 
      TCGA-91-6828       TCGA-91-6829       TCGA-91-6831       TCGA-91-6835 
"OR5D16 WILD-TYPE" "OR5D16 WILD-TYPE" "OR5D16 WILD-TYPE" "OR5D16 WILD-TYPE" 
      TCGA-91-6836 
  "OR5D16 MUTATED" 
[1] "hr=" "1.3"
D78V2, continuous
D78V3, binary
[1] "tbl2"
                  cls
clus               [,1] [,2]
  OR5D16 MUTATED      2    5
  OR5D16 WILD-TYPE   91   74
        clus
vv       OR5D16 MUTATED OR5D16 WILD-TYPE
  FEMALE              2               91
  MALE                5               74
D78V4, continuous
D78V5, multiclass
D78V6, multiclass
    clus
vv   OR5D16 MUTATED OR5D16 WILD-TYPE
  T1              2               39
  T2              3              105
  T3              1               13
  T4              1                7
D78V7, multiclass
       clus
vv      OR5D16 MUTATED OR5D16 WILD-TYPE
  N0                 3               92
  N1                 3               34
  N2+N3              1               34
D78V8, multiclass
    clus
vv   OR5D16 MUTATED OR5D16 WILD-TYPE
  M0              6              131
  M1              0                9
  MX              1               21
D78V9, multiclass
     clus
vv    OR5D16 MUTATED OR5D16 WILD-TYPE
  I                4               84
  II               1               32
  III              2               37
  IV               0                9
D78V10, binary
[1] "tbl2"
                  cls
clus               [,1] [,2]
  OR5D16 MUTATED      0    7
  OR5D16 WILD-TYPE   16  149
     clus
vv    OR5D16 MUTATED OR5D16 WILD-TYPE
  NO               0               16
  YES              7              149
D78V11, continuous
D78V12, continuous
D78V13, multiclass
                                             clus
vv                                            OR5D16 MUTATED OR5D16 WILD-TYPE
  CURRENT REFORMED SMOKER FOR < OR = 15 YEARS              2               60
  CURRENT REFORMED SMOKER FOR > 15 YEARS                   2               44
  CURRENT SMOKER                                           3               25
  LIFELONG NON-SMOKER                                      0               24
D78V14, continuous

Clustering(79) Variable = CMKLR1 MUTATION ANALYSIS
D79V1, survival
                  sevent
clus2               0  1
  CMKLR1 MUTATED    3  3
  CMKLR1 WILD-TYPE 96 47
  CMKLR1 MUTATED CMKLR1 WILD-TYPE 
               6              143 
  CMKLR1 MUTATED CMKLR1 WILD-TYPE 
               3               47 
$`CMKLR1 MUTATED`
TCGA-05-4397 TCGA-05-4424 TCGA-49-4507 TCGA-49-6744 TCGA-50-5939 TCGA-67-3770 
       24.03        30.02         8.81        12.99        15.12         0.99 

$`CMKLR1 WILD-TYPE`
TCGA-05-4249 TCGA-05-4250 TCGA-05-4382 TCGA-05-4384 TCGA-05-4390 TCGA-05-4396 
       38.07         3.98        19.92        14.01        37.02         9.96 
TCGA-05-4398 TCGA-05-4402 TCGA-05-4405 TCGA-05-4415 TCGA-05-4417 TCGA-05-4418 
       47.05         8.02        20.05         2.96        14.93         8.98 
TCGA-05-4420 TCGA-05-4426 TCGA-05-4427 TCGA-05-4430 TCGA-05-4432 TCGA-05-4433 
       29.95        26.01        26.01        25.02        25.02        24.00 
TCGA-05-4434 TCGA-05-5420 TCGA-05-5423 TCGA-05-5425 TCGA-05-5429 TCGA-05-5715 
       15.02         1.02         4.96         2.96         0.99         2.04 
TCGA-35-3615 TCGA-35-4122 TCGA-35-4123 TCGA-35-5375 TCGA-38-4625 TCGA-38-4626 
        0.46         7.36         5.95         8.68        47.61        85.32 
TCGA-38-4627 TCGA-38-4628 TCGA-38-4629 TCGA-38-4630 TCGA-38-4631 TCGA-38-4632 
       37.71        49.02        28.37        35.28        11.64        44.61 
TCGA-38-6178 TCGA-44-2655 TCGA-44-2656 TCGA-44-2657 TCGA-44-2659 TCGA-44-2661 
        5.19        18.87        19.10        13.15        17.39         3.39 
TCGA-44-2662 TCGA-44-2665 TCGA-44-2666 TCGA-44-2668 TCGA-44-3396 TCGA-44-3398 
       15.78        13.15         3.19         8.09        10.22         8.32 
TCGA-44-3918 TCGA-44-3919 TCGA-44-4112 TCGA-44-5643 TCGA-44-5645 TCGA-44-6144 
        6.44         6.21         4.60         3.48         6.84         0.30 
TCGA-44-6145 TCGA-44-6146 TCGA-44-6147 TCGA-44-6148 TCGA-44-6774 TCGA-44-6775 
        3.35         9.93         7.76         3.12         5.42         2.70 
TCGA-44-6776 TCGA-44-6777 TCGA-44-6778 TCGA-44-6779 TCGA-49-4486 TCGA-49-4487 
       63.72        32.45        36.49        16.41        76.21        28.11 
TCGA-49-4488 TCGA-49-4490 TCGA-49-4494 TCGA-49-4501 TCGA-49-4505 TCGA-49-4506 
       28.57        12.66        35.54        46.72        14.07        32.84 
TCGA-49-4510 TCGA-49-4512 TCGA-49-4514 TCGA-49-6742 TCGA-49-6743 TCGA-49-6745 
       29.46        29.75        43.20        15.02        12.13         4.93 
TCGA-50-5044 TCGA-50-5045 TCGA-50-5049 TCGA-50-5051 TCGA-50-5055 TCGA-50-5066 
       20.48        71.47        48.82        14.96        25.81         9.76 
TCGA-50-5068 TCGA-50-5072 TCGA-50-5930 TCGA-50-5931 TCGA-50-5932 TCGA-50-5933 
       49.28         8.05         9.27         8.78        35.87        77.88 
TCGA-50-5935 TCGA-50-5936 TCGA-50-5941 TCGA-50-5942 TCGA-50-5944 TCGA-50-5946 
       21.47         8.45         9.37         4.44        12.26        11.47 
TCGA-50-6590 TCGA-50-6591 TCGA-50-6592 TCGA-50-6593 TCGA-50-6594 TCGA-50-6595 
       42.31         3.88        25.51        11.05        12.16         6.21 
TCGA-50-6597 TCGA-55-1592 TCGA-55-1594 TCGA-55-1595 TCGA-55-1596 TCGA-55-5899 
       33.37        23.05        38.73        48.62        45.17         2.86 
TCGA-55-6543 TCGA-55-6642 TCGA-55-6712 TCGA-64-1676 TCGA-64-1677 TCGA-64-1678 
        0.07        32.61         0.79        56.81        20.65        39.09 
TCGA-64-1680 TCGA-64-5774 TCGA-64-5775 TCGA-64-5778 TCGA-64-5779 TCGA-64-5781 
       37.02        83.84         0.10        30.44        16.67        39.52 
TCGA-64-5815 TCGA-67-3771 TCGA-67-3772 TCGA-67-3773 TCGA-67-3774 TCGA-67-6215 
        7.33         1.97         0.59         2.04         0.59         0.89 
TCGA-67-6216 TCGA-67-6217 TCGA-71-6725 TCGA-73-4658 TCGA-73-4659 TCGA-73-4662 
        0.69        13.87         2.01        52.57        23.38        29.95 
TCGA-73-4666 TCGA-73-4668 TCGA-73-4670 TCGA-73-4675 TCGA-73-4676 TCGA-73-4677 
       20.28        15.35         0.46         1.32         4.01         1.25 
TCGA-91-6828 TCGA-91-6829 TCGA-91-6831 TCGA-91-6835 TCGA-91-6836 
        1.22        41.33         1.28         1.15         0.36 

  CMKLR1 MUTATED CMKLR1 WILD-TYPE 
            0.99             0.07 
  CMKLR1 MUTATED CMKLR1 WILD-TYPE 
           30.02            85.32 
  CMKLR1 MUTATED CMKLR1 WILD-TYPE 
          14.055           13.870 
[1] "1.0 - 30.0 (14.1)" "0.1 - 85.3 (13.9)"
      TCGA-05-4249       TCGA-05-4250       TCGA-05-4382       TCGA-05-4384 
"CMKLR1 WILD-TYPE" "CMKLR1 WILD-TYPE" "CMKLR1 WILD-TYPE" "CMKLR1 WILD-TYPE" 
      TCGA-05-4390       TCGA-05-4396       TCGA-05-4397       TCGA-05-4398 
"CMKLR1 WILD-TYPE" "CMKLR1 WILD-TYPE"   "CMKLR1 MUTATED" "CMKLR1 WILD-TYPE" 
      TCGA-05-4402       TCGA-05-4405       TCGA-05-4415       TCGA-05-4417 
"CMKLR1 WILD-TYPE" "CMKLR1 WILD-TYPE" "CMKLR1 WILD-TYPE" "CMKLR1 WILD-TYPE" 
      TCGA-05-4418       TCGA-05-4420       TCGA-05-4424       TCGA-05-4426 
"CMKLR1 WILD-TYPE" "CMKLR1 WILD-TYPE"   "CMKLR1 MUTATED" "CMKLR1 WILD-TYPE" 
      TCGA-05-4427       TCGA-05-4430       TCGA-05-4432       TCGA-05-4433 
"CMKLR1 WILD-TYPE" "CMKLR1 WILD-TYPE" "CMKLR1 WILD-TYPE" "CMKLR1 WILD-TYPE" 
      TCGA-05-4434       TCGA-05-5420       TCGA-05-5423       TCGA-05-5425 
"CMKLR1 WILD-TYPE" "CMKLR1 WILD-TYPE" "CMKLR1 WILD-TYPE" "CMKLR1 WILD-TYPE" 
      TCGA-05-5429       TCGA-05-5715       TCGA-35-3615       TCGA-35-4122 
"CMKLR1 WILD-TYPE" "CMKLR1 WILD-TYPE" "CMKLR1 WILD-TYPE" "CMKLR1 WILD-TYPE" 
      TCGA-35-4123       TCGA-35-5375       TCGA-38-4625       TCGA-38-4626 
"CMKLR1 WILD-TYPE" "CMKLR1 WILD-TYPE" "CMKLR1 WILD-TYPE" "CMKLR1 WILD-TYPE" 
      TCGA-38-4627       TCGA-38-4628       TCGA-38-4629       TCGA-38-4630 
"CMKLR1 WILD-TYPE" "CMKLR1 WILD-TYPE" "CMKLR1 WILD-TYPE" "CMKLR1 WILD-TYPE" 
      TCGA-38-4631       TCGA-38-4632       TCGA-38-6178       TCGA-44-2655 
"CMKLR1 WILD-TYPE" "CMKLR1 WILD-TYPE" "CMKLR1 WILD-TYPE" "CMKLR1 WILD-TYPE" 
      TCGA-44-2656       TCGA-44-2657       TCGA-44-2659       TCGA-44-2661 
"CMKLR1 WILD-TYPE" "CMKLR1 WILD-TYPE" "CMKLR1 WILD-TYPE" "CMKLR1 WILD-TYPE" 
      TCGA-44-2662       TCGA-44-2665       TCGA-44-2666       TCGA-44-2668 
"CMKLR1 WILD-TYPE" "CMKLR1 WILD-TYPE" "CMKLR1 WILD-TYPE" "CMKLR1 WILD-TYPE" 
      TCGA-44-3396       TCGA-44-3398       TCGA-44-3918       TCGA-44-3919 
"CMKLR1 WILD-TYPE" "CMKLR1 WILD-TYPE" "CMKLR1 WILD-TYPE" "CMKLR1 WILD-TYPE" 
      TCGA-44-4112       TCGA-44-5643       TCGA-44-5645       TCGA-44-6144 
"CMKLR1 WILD-TYPE" "CMKLR1 WILD-TYPE" "CMKLR1 WILD-TYPE" "CMKLR1 WILD-TYPE" 
      TCGA-44-6145       TCGA-44-6146       TCGA-44-6147       TCGA-44-6148 
"CMKLR1 WILD-TYPE" "CMKLR1 WILD-TYPE" "CMKLR1 WILD-TYPE" "CMKLR1 WILD-TYPE" 
      TCGA-44-6774       TCGA-44-6775       TCGA-44-6776       TCGA-44-6777 
"CMKLR1 WILD-TYPE" "CMKLR1 WILD-TYPE" "CMKLR1 WILD-TYPE" "CMKLR1 WILD-TYPE" 
      TCGA-44-6778       TCGA-44-6779       TCGA-49-4486       TCGA-49-4487 
"CMKLR1 WILD-TYPE" "CMKLR1 WILD-TYPE" "CMKLR1 WILD-TYPE" "CMKLR1 WILD-TYPE" 
      TCGA-49-4488       TCGA-49-4490       TCGA-49-4494       TCGA-49-4501 
"CMKLR1 WILD-TYPE" "CMKLR1 WILD-TYPE" "CMKLR1 WILD-TYPE" "CMKLR1 WILD-TYPE" 
      TCGA-49-4505       TCGA-49-4506       TCGA-49-4507       TCGA-49-4510 
"CMKLR1 WILD-TYPE" "CMKLR1 WILD-TYPE"   "CMKLR1 MUTATED" "CMKLR1 WILD-TYPE" 
      TCGA-49-4512       TCGA-49-4514       TCGA-49-6742       TCGA-49-6743 
"CMKLR1 WILD-TYPE" "CMKLR1 WILD-TYPE" "CMKLR1 WILD-TYPE" "CMKLR1 WILD-TYPE" 
      TCGA-49-6744       TCGA-49-6745       TCGA-50-5044       TCGA-50-5045 
  "CMKLR1 MUTATED" "CMKLR1 WILD-TYPE" "CMKLR1 WILD-TYPE" "CMKLR1 WILD-TYPE" 
      TCGA-50-5049       TCGA-50-5051       TCGA-50-5055       TCGA-50-5066 
"CMKLR1 WILD-TYPE" "CMKLR1 WILD-TYPE" "CMKLR1 WILD-TYPE" "CMKLR1 WILD-TYPE" 
      TCGA-50-5068       TCGA-50-5072       TCGA-50-5930       TCGA-50-5931 
"CMKLR1 WILD-TYPE" "CMKLR1 WILD-TYPE" "CMKLR1 WILD-TYPE" "CMKLR1 WILD-TYPE" 
      TCGA-50-5932       TCGA-50-5933       TCGA-50-5935       TCGA-50-5936 
"CMKLR1 WILD-TYPE" "CMKLR1 WILD-TYPE" "CMKLR1 WILD-TYPE" "CMKLR1 WILD-TYPE" 
      TCGA-50-5939       TCGA-50-5941       TCGA-50-5942       TCGA-50-5944 
  "CMKLR1 MUTATED" "CMKLR1 WILD-TYPE" "CMKLR1 WILD-TYPE" "CMKLR1 WILD-TYPE" 
      TCGA-50-5946       TCGA-50-6590       TCGA-50-6591       TCGA-50-6592 
"CMKLR1 WILD-TYPE" "CMKLR1 WILD-TYPE" "CMKLR1 WILD-TYPE" "CMKLR1 WILD-TYPE" 
      TCGA-50-6593       TCGA-50-6594       TCGA-50-6595       TCGA-50-6597 
"CMKLR1 WILD-TYPE" "CMKLR1 WILD-TYPE" "CMKLR1 WILD-TYPE" "CMKLR1 WILD-TYPE" 
      TCGA-55-1592       TCGA-55-1594       TCGA-55-1595       TCGA-55-1596 
"CMKLR1 WILD-TYPE" "CMKLR1 WILD-TYPE" "CMKLR1 WILD-TYPE" "CMKLR1 WILD-TYPE" 
      TCGA-55-5899       TCGA-55-6543       TCGA-55-6642       TCGA-55-6712 
"CMKLR1 WILD-TYPE" "CMKLR1 WILD-TYPE" "CMKLR1 WILD-TYPE" "CMKLR1 WILD-TYPE" 
      TCGA-64-1676       TCGA-64-1677       TCGA-64-1678       TCGA-64-1680 
"CMKLR1 WILD-TYPE" "CMKLR1 WILD-TYPE" "CMKLR1 WILD-TYPE" "CMKLR1 WILD-TYPE" 
      TCGA-64-5774       TCGA-64-5775       TCGA-64-5778       TCGA-64-5779 
"CMKLR1 WILD-TYPE" "CMKLR1 WILD-TYPE" "CMKLR1 WILD-TYPE" "CMKLR1 WILD-TYPE" 
      TCGA-64-5781       TCGA-64-5815       TCGA-67-3770       TCGA-67-3771 
"CMKLR1 WILD-TYPE" "CMKLR1 WILD-TYPE"   "CMKLR1 MUTATED" "CMKLR1 WILD-TYPE" 
      TCGA-67-3772       TCGA-67-3773       TCGA-67-3774       TCGA-67-6215 
"CMKLR1 WILD-TYPE" "CMKLR1 WILD-TYPE" "CMKLR1 WILD-TYPE" "CMKLR1 WILD-TYPE" 
      TCGA-67-6216       TCGA-67-6217       TCGA-71-6725       TCGA-73-4658 
"CMKLR1 WILD-TYPE" "CMKLR1 WILD-TYPE" "CMKLR1 WILD-TYPE" "CMKLR1 WILD-TYPE" 
      TCGA-73-4659       TCGA-73-4662       TCGA-73-4666       TCGA-73-4668 
"CMKLR1 WILD-TYPE" "CMKLR1 WILD-TYPE" "CMKLR1 WILD-TYPE" "CMKLR1 WILD-TYPE" 
      TCGA-73-4670       TCGA-73-4675       TCGA-73-4676       TCGA-73-4677 
"CMKLR1 WILD-TYPE" "CMKLR1 WILD-TYPE" "CMKLR1 WILD-TYPE" "CMKLR1 WILD-TYPE" 
      TCGA-91-6828       TCGA-91-6829       TCGA-91-6831       TCGA-91-6835 
"CMKLR1 WILD-TYPE" "CMKLR1 WILD-TYPE" "CMKLR1 WILD-TYPE" "CMKLR1 WILD-TYPE" 
      TCGA-91-6836 
"CMKLR1 WILD-TYPE" 
      TCGA-05-4249       TCGA-05-4250       TCGA-05-4382       TCGA-05-4384 
"CMKLR1 WILD-TYPE" "CMKLR1 WILD-TYPE" "CMKLR1 WILD-TYPE" "CMKLR1 WILD-TYPE" 
      TCGA-05-4390       TCGA-05-4396       TCGA-05-4397       TCGA-05-4398 
"CMKLR1 WILD-TYPE" "CMKLR1 WILD-TYPE"   "CMKLR1 MUTATED" "CMKLR1 WILD-TYPE" 
      TCGA-05-4402       TCGA-05-4405       TCGA-05-4415       TCGA-05-4417 
"CMKLR1 WILD-TYPE" "CMKLR1 WILD-TYPE" "CMKLR1 WILD-TYPE" "CMKLR1 WILD-TYPE" 
      TCGA-05-4418       TCGA-05-4420       TCGA-05-4424       TCGA-05-4426 
"CMKLR1 WILD-TYPE" "CMKLR1 WILD-TYPE"   "CMKLR1 MUTATED" "CMKLR1 WILD-TYPE" 
      TCGA-05-4427       TCGA-05-4430       TCGA-05-4432       TCGA-05-4433 
"CMKLR1 WILD-TYPE" "CMKLR1 WILD-TYPE" "CMKLR1 WILD-TYPE" "CMKLR1 WILD-TYPE" 
      TCGA-05-4434       TCGA-05-5420       TCGA-05-5423       TCGA-05-5425 
"CMKLR1 WILD-TYPE" "CMKLR1 WILD-TYPE" "CMKLR1 WILD-TYPE" "CMKLR1 WILD-TYPE" 
      TCGA-05-5429       TCGA-05-5715       TCGA-35-3615       TCGA-35-4122 
"CMKLR1 WILD-TYPE" "CMKLR1 WILD-TYPE" "CMKLR1 WILD-TYPE" "CMKLR1 WILD-TYPE" 
      TCGA-35-4123       TCGA-35-5375       TCGA-38-4625       TCGA-38-4626 
"CMKLR1 WILD-TYPE" "CMKLR1 WILD-TYPE" "CMKLR1 WILD-TYPE" "CMKLR1 WILD-TYPE" 
      TCGA-38-4627       TCGA-38-4628       TCGA-38-4629       TCGA-38-4630 
"CMKLR1 WILD-TYPE" "CMKLR1 WILD-TYPE" "CMKLR1 WILD-TYPE" "CMKLR1 WILD-TYPE" 
      TCGA-38-4631       TCGA-38-4632       TCGA-38-6178       TCGA-44-2655 
"CMKLR1 WILD-TYPE" "CMKLR1 WILD-TYPE" "CMKLR1 WILD-TYPE" "CMKLR1 WILD-TYPE" 
      TCGA-44-2656       TCGA-44-2657       TCGA-44-2659       TCGA-44-2661 
"CMKLR1 WILD-TYPE" "CMKLR1 WILD-TYPE" "CMKLR1 WILD-TYPE" "CMKLR1 WILD-TYPE" 
      TCGA-44-2662       TCGA-44-2665       TCGA-44-2666       TCGA-44-2668 
"CMKLR1 WILD-TYPE" "CMKLR1 WILD-TYPE" "CMKLR1 WILD-TYPE" "CMKLR1 WILD-TYPE" 
      TCGA-44-3396       TCGA-44-3398       TCGA-44-3918       TCGA-44-3919 
"CMKLR1 WILD-TYPE" "CMKLR1 WILD-TYPE" "CMKLR1 WILD-TYPE" "CMKLR1 WILD-TYPE" 
      TCGA-44-4112       TCGA-44-5643       TCGA-44-5645       TCGA-44-6144 
"CMKLR1 WILD-TYPE" "CMKLR1 WILD-TYPE" "CMKLR1 WILD-TYPE" "CMKLR1 WILD-TYPE" 
      TCGA-44-6145       TCGA-44-6146       TCGA-44-6147       TCGA-44-6148 
"CMKLR1 WILD-TYPE" "CMKLR1 WILD-TYPE" "CMKLR1 WILD-TYPE" "CMKLR1 WILD-TYPE" 
      TCGA-44-6774       TCGA-44-6775       TCGA-44-6776       TCGA-44-6777 
"CMKLR1 WILD-TYPE" "CMKLR1 WILD-TYPE" "CMKLR1 WILD-TYPE" "CMKLR1 WILD-TYPE" 
      TCGA-44-6778       TCGA-44-6779       TCGA-49-4486       TCGA-49-4487 
"CMKLR1 WILD-TYPE" "CMKLR1 WILD-TYPE" "CMKLR1 WILD-TYPE" "CMKLR1 WILD-TYPE" 
      TCGA-49-4488       TCGA-49-4490       TCGA-49-4494       TCGA-49-4501 
"CMKLR1 WILD-TYPE" "CMKLR1 WILD-TYPE" "CMKLR1 WILD-TYPE" "CMKLR1 WILD-TYPE" 
      TCGA-49-4505       TCGA-49-4506       TCGA-49-4507       TCGA-49-4510 
"CMKLR1 WILD-TYPE" "CMKLR1 WILD-TYPE"   "CMKLR1 MUTATED" "CMKLR1 WILD-TYPE" 
      TCGA-49-4512       TCGA-49-4514       TCGA-49-6742       TCGA-49-6743 
"CMKLR1 WILD-TYPE" "CMKLR1 WILD-TYPE" "CMKLR1 WILD-TYPE" "CMKLR1 WILD-TYPE" 
      TCGA-49-6744       TCGA-49-6745       TCGA-50-5044       TCGA-50-5045 
  "CMKLR1 MUTATED" "CMKLR1 WILD-TYPE" "CMKLR1 WILD-TYPE" "CMKLR1 WILD-TYPE" 
      TCGA-50-5049       TCGA-50-5051       TCGA-50-5055       TCGA-50-5066 
"CMKLR1 WILD-TYPE" "CMKLR1 WILD-TYPE" "CMKLR1 WILD-TYPE" "CMKLR1 WILD-TYPE" 
      TCGA-50-5068       TCGA-50-5072       TCGA-50-5930       TCGA-50-5931 
"CMKLR1 WILD-TYPE" "CMKLR1 WILD-TYPE" "CMKLR1 WILD-TYPE" "CMKLR1 WILD-TYPE" 
      TCGA-50-5932       TCGA-50-5933       TCGA-50-5935       TCGA-50-5936 
"CMKLR1 WILD-TYPE" "CMKLR1 WILD-TYPE" "CMKLR1 WILD-TYPE" "CMKLR1 WILD-TYPE" 
      TCGA-50-5939       TCGA-50-5941       TCGA-50-5942       TCGA-50-5944 
  "CMKLR1 MUTATED" "CMKLR1 WILD-TYPE" "CMKLR1 WILD-TYPE" "CMKLR1 WILD-TYPE" 
      TCGA-50-5946       TCGA-50-6590       TCGA-50-6591       TCGA-50-6592 
"CMKLR1 WILD-TYPE" "CMKLR1 WILD-TYPE" "CMKLR1 WILD-TYPE" "CMKLR1 WILD-TYPE" 
      TCGA-50-6593       TCGA-50-6594       TCGA-50-6595       TCGA-50-6597 
"CMKLR1 WILD-TYPE" "CMKLR1 WILD-TYPE" "CMKLR1 WILD-TYPE" "CMKLR1 WILD-TYPE" 
      TCGA-55-1592       TCGA-55-1594       TCGA-55-1595       TCGA-55-1596 
"CMKLR1 WILD-TYPE" "CMKLR1 WILD-TYPE" "CMKLR1 WILD-TYPE" "CMKLR1 WILD-TYPE" 
      TCGA-55-5899       TCGA-55-6543       TCGA-55-6642       TCGA-55-6712 
"CMKLR1 WILD-TYPE" "CMKLR1 WILD-TYPE" "CMKLR1 WILD-TYPE" "CMKLR1 WILD-TYPE" 
      TCGA-64-1676       TCGA-64-1677       TCGA-64-1678       TCGA-64-1680 
"CMKLR1 WILD-TYPE" "CMKLR1 WILD-TYPE" "CMKLR1 WILD-TYPE" "CMKLR1 WILD-TYPE" 
      TCGA-64-5774       TCGA-64-5775       TCGA-64-5778       TCGA-64-5779 
"CMKLR1 WILD-TYPE" "CMKLR1 WILD-TYPE" "CMKLR1 WILD-TYPE" "CMKLR1 WILD-TYPE" 
      TCGA-64-5781       TCGA-64-5815       TCGA-67-3770       TCGA-67-3771 
"CMKLR1 WILD-TYPE" "CMKLR1 WILD-TYPE"   "CMKLR1 MUTATED" "CMKLR1 WILD-TYPE" 
      TCGA-67-3772       TCGA-67-3773       TCGA-67-3774       TCGA-67-6215 
"CMKLR1 WILD-TYPE" "CMKLR1 WILD-TYPE" "CMKLR1 WILD-TYPE" "CMKLR1 WILD-TYPE" 
      TCGA-67-6216       TCGA-67-6217       TCGA-71-6725       TCGA-73-4658 
"CMKLR1 WILD-TYPE" "CMKLR1 WILD-TYPE" "CMKLR1 WILD-TYPE" "CMKLR1 WILD-TYPE" 
      TCGA-73-4659       TCGA-73-4662       TCGA-73-4666       TCGA-73-4668 
"CMKLR1 WILD-TYPE" "CMKLR1 WILD-TYPE" "CMKLR1 WILD-TYPE" "CMKLR1 WILD-TYPE" 
      TCGA-73-4670       TCGA-73-4675       TCGA-73-4676       TCGA-73-4677 
"CMKLR1 WILD-TYPE" "CMKLR1 WILD-TYPE" "CMKLR1 WILD-TYPE" "CMKLR1 WILD-TYPE" 
      TCGA-91-6828       TCGA-91-6829       TCGA-91-6831       TCGA-91-6835 
"CMKLR1 WILD-TYPE" "CMKLR1 WILD-TYPE" "CMKLR1 WILD-TYPE" "CMKLR1 WILD-TYPE" 
      TCGA-91-6836 
"CMKLR1 WILD-TYPE" 
      TCGA-05-4249       TCGA-05-4250       TCGA-05-4382       TCGA-05-4384 
"CMKLR1 WILD-TYPE" "CMKLR1 WILD-TYPE" "CMKLR1 WILD-TYPE" "CMKLR1 WILD-TYPE" 
      TCGA-05-4390       TCGA-05-4396       TCGA-05-4397       TCGA-05-4398 
"CMKLR1 WILD-TYPE" "CMKLR1 WILD-TYPE"   "CMKLR1 MUTATED" "CMKLR1 WILD-TYPE" 
      TCGA-05-4402       TCGA-05-4405       TCGA-05-4415       TCGA-05-4417 
"CMKLR1 WILD-TYPE" "CMKLR1 WILD-TYPE" "CMKLR1 WILD-TYPE" "CMKLR1 WILD-TYPE" 
      TCGA-05-4418       TCGA-05-4420       TCGA-05-4424       TCGA-05-4426 
"CMKLR1 WILD-TYPE" "CMKLR1 WILD-TYPE"   "CMKLR1 MUTATED" "CMKLR1 WILD-TYPE" 
      TCGA-05-4427       TCGA-05-4430       TCGA-05-4432       TCGA-05-4433 
"CMKLR1 WILD-TYPE" "CMKLR1 WILD-TYPE" "CMKLR1 WILD-TYPE" "CMKLR1 WILD-TYPE" 
      TCGA-05-4434       TCGA-05-5420       TCGA-05-5423       TCGA-05-5425 
"CMKLR1 WILD-TYPE" "CMKLR1 WILD-TYPE" "CMKLR1 WILD-TYPE" "CMKLR1 WILD-TYPE" 
      TCGA-05-5429       TCGA-05-5715       TCGA-35-3615       TCGA-35-4122 
"CMKLR1 WILD-TYPE" "CMKLR1 WILD-TYPE" "CMKLR1 WILD-TYPE" "CMKLR1 WILD-TYPE" 
      TCGA-35-4123       TCGA-35-5375       TCGA-38-4625       TCGA-38-4626 
"CMKLR1 WILD-TYPE" "CMKLR1 WILD-TYPE" "CMKLR1 WILD-TYPE" "CMKLR1 WILD-TYPE" 
      TCGA-38-4627       TCGA-38-4628       TCGA-38-4629       TCGA-38-4630 
"CMKLR1 WILD-TYPE" "CMKLR1 WILD-TYPE" "CMKLR1 WILD-TYPE" "CMKLR1 WILD-TYPE" 
      TCGA-38-4631       TCGA-38-4632       TCGA-38-6178       TCGA-44-2655 
"CMKLR1 WILD-TYPE" "CMKLR1 WILD-TYPE" "CMKLR1 WILD-TYPE" "CMKLR1 WILD-TYPE" 
      TCGA-44-2656       TCGA-44-2657       TCGA-44-2659       TCGA-44-2661 
"CMKLR1 WILD-TYPE" "CMKLR1 WILD-TYPE" "CMKLR1 WILD-TYPE" "CMKLR1 WILD-TYPE" 
      TCGA-44-2662       TCGA-44-2665       TCGA-44-2666       TCGA-44-2668 
"CMKLR1 WILD-TYPE" "CMKLR1 WILD-TYPE" "CMKLR1 WILD-TYPE" "CMKLR1 WILD-TYPE" 
      TCGA-44-3396       TCGA-44-3398       TCGA-44-3918       TCGA-44-3919 
"CMKLR1 WILD-TYPE" "CMKLR1 WILD-TYPE" "CMKLR1 WILD-TYPE" "CMKLR1 WILD-TYPE" 
      TCGA-44-4112       TCGA-44-5643       TCGA-44-5645       TCGA-44-6144 
"CMKLR1 WILD-TYPE" "CMKLR1 WILD-TYPE" "CMKLR1 WILD-TYPE" "CMKLR1 WILD-TYPE" 
      TCGA-44-6145       TCGA-44-6146       TCGA-44-6147       TCGA-44-6148 
"CMKLR1 WILD-TYPE" "CMKLR1 WILD-TYPE" "CMKLR1 WILD-TYPE" "CMKLR1 WILD-TYPE" 
      TCGA-44-6774       TCGA-44-6775       TCGA-44-6776       TCGA-44-6777 
"CMKLR1 WILD-TYPE" "CMKLR1 WILD-TYPE" "CMKLR1 WILD-TYPE" "CMKLR1 WILD-TYPE" 
      TCGA-44-6778       TCGA-44-6779       TCGA-49-4486       TCGA-49-4487 
"CMKLR1 WILD-TYPE" "CMKLR1 WILD-TYPE" "CMKLR1 WILD-TYPE" "CMKLR1 WILD-TYPE" 
      TCGA-49-4488       TCGA-49-4490       TCGA-49-4494       TCGA-49-4501 
"CMKLR1 WILD-TYPE" "CMKLR1 WILD-TYPE" "CMKLR1 WILD-TYPE" "CMKLR1 WILD-TYPE" 
      TCGA-49-4505       TCGA-49-4506       TCGA-49-4507       TCGA-49-4510 
"CMKLR1 WILD-TYPE" "CMKLR1 WILD-TYPE"   "CMKLR1 MUTATED" "CMKLR1 WILD-TYPE" 
      TCGA-49-4512       TCGA-49-4514       TCGA-49-6742       TCGA-49-6743 
"CMKLR1 WILD-TYPE" "CMKLR1 WILD-TYPE" "CMKLR1 WILD-TYPE" "CMKLR1 WILD-TYPE" 
      TCGA-49-6744       TCGA-49-6745       TCGA-50-5044       TCGA-50-5045 
  "CMKLR1 MUTATED" "CMKLR1 WILD-TYPE" "CMKLR1 WILD-TYPE" "CMKLR1 WILD-TYPE" 
      TCGA-50-5049       TCGA-50-5051       TCGA-50-5055       TCGA-50-5066 
"CMKLR1 WILD-TYPE" "CMKLR1 WILD-TYPE" "CMKLR1 WILD-TYPE" "CMKLR1 WILD-TYPE" 
      TCGA-50-5068       TCGA-50-5072       TCGA-50-5930       TCGA-50-5931 
"CMKLR1 WILD-TYPE" "CMKLR1 WILD-TYPE" "CMKLR1 WILD-TYPE" "CMKLR1 WILD-TYPE" 
      TCGA-50-5932       TCGA-50-5933       TCGA-50-5935       TCGA-50-5936 
"CMKLR1 WILD-TYPE" "CMKLR1 WILD-TYPE" "CMKLR1 WILD-TYPE" "CMKLR1 WILD-TYPE" 
      TCGA-50-5939       TCGA-50-5941       TCGA-50-5942       TCGA-50-5944 
  "CMKLR1 MUTATED" "CMKLR1 WILD-TYPE" "CMKLR1 WILD-TYPE" "CMKLR1 WILD-TYPE" 
      TCGA-50-5946       TCGA-50-6590       TCGA-50-6591       TCGA-50-6592 
"CMKLR1 WILD-TYPE" "CMKLR1 WILD-TYPE" "CMKLR1 WILD-TYPE" "CMKLR1 WILD-TYPE" 
      TCGA-50-6593       TCGA-50-6594       TCGA-50-6595       TCGA-50-6597 
"CMKLR1 WILD-TYPE" "CMKLR1 WILD-TYPE" "CMKLR1 WILD-TYPE" "CMKLR1 WILD-TYPE" 
      TCGA-55-1592       TCGA-55-1594       TCGA-55-1595       TCGA-55-1596 
"CMKLR1 WILD-TYPE" "CMKLR1 WILD-TYPE" "CMKLR1 WILD-TYPE" "CMKLR1 WILD-TYPE" 
      TCGA-55-5899       TCGA-55-6543       TCGA-55-6642       TCGA-55-6712 
"CMKLR1 WILD-TYPE" "CMKLR1 WILD-TYPE" "CMKLR1 WILD-TYPE" "CMKLR1 WILD-TYPE" 
      TCGA-64-1676       TCGA-64-1677       TCGA-64-1678       TCGA-64-1680 
"CMKLR1 WILD-TYPE" "CMKLR1 WILD-TYPE" "CMKLR1 WILD-TYPE" "CMKLR1 WILD-TYPE" 
      TCGA-64-5774       TCGA-64-5775       TCGA-64-5778       TCGA-64-5779 
"CMKLR1 WILD-TYPE" "CMKLR1 WILD-TYPE" "CMKLR1 WILD-TYPE" "CMKLR1 WILD-TYPE" 
      TCGA-64-5781       TCGA-64-5815       TCGA-67-3770       TCGA-67-3771 
"CMKLR1 WILD-TYPE" "CMKLR1 WILD-TYPE"   "CMKLR1 MUTATED" "CMKLR1 WILD-TYPE" 
      TCGA-67-3772       TCGA-67-3773       TCGA-67-3774       TCGA-67-6215 
"CMKLR1 WILD-TYPE" "CMKLR1 WILD-TYPE" "CMKLR1 WILD-TYPE" "CMKLR1 WILD-TYPE" 
      TCGA-67-6216       TCGA-67-6217       TCGA-71-6725       TCGA-73-4658 
"CMKLR1 WILD-TYPE" "CMKLR1 WILD-TYPE" "CMKLR1 WILD-TYPE" "CMKLR1 WILD-TYPE" 
      TCGA-73-4659       TCGA-73-4662       TCGA-73-4666       TCGA-73-4668 
"CMKLR1 WILD-TYPE" "CMKLR1 WILD-TYPE" "CMKLR1 WILD-TYPE" "CMKLR1 WILD-TYPE" 
      TCGA-73-4670       TCGA-73-4675       TCGA-73-4676       TCGA-73-4677 
"CMKLR1 WILD-TYPE" "CMKLR1 WILD-TYPE" "CMKLR1 WILD-TYPE" "CMKLR1 WILD-TYPE" 
      TCGA-91-6828       TCGA-91-6829       TCGA-91-6831       TCGA-91-6835 
"CMKLR1 WILD-TYPE" "CMKLR1 WILD-TYPE" "CMKLR1 WILD-TYPE" "CMKLR1 WILD-TYPE" 
      TCGA-91-6836 
"CMKLR1 WILD-TYPE" 
[1] "hr=" "2.3"
D79V2, continuous
D79V3, binary
[1] "tbl2"
                  cls
clus               [,1] [,2]
  CMKLR1 MUTATED      3    4
  CMKLR1 WILD-TYPE   90   75
        clus
vv       CMKLR1 MUTATED CMKLR1 WILD-TYPE
  FEMALE              3               90
  MALE                4               75
D79V4, continuous
D79V5, multiclass
D79V6, multiclass
    clus
vv   CMKLR1 MUTATED CMKLR1 WILD-TYPE
  T1              1               40
  T2              4              104
  T3              2               12
  T4              0                8
D79V7, multiclass
       clus
vv      CMKLR1 MUTATED CMKLR1 WILD-TYPE
  N0                 4               91
  N1                 3               34
  N2+N3              0               35
D79V8, multiclass
    clus
vv   CMKLR1 MUTATED CMKLR1 WILD-TYPE
  M0              6              131
  M1              0                9
  MX              1               21
D79V9, multiclass
     clus
vv    CMKLR1 MUTATED CMKLR1 WILD-TYPE
  I                3               85
  II               3               30
  III              1               38
  IV               0                9
D79V10, binary
[1] "tbl2"
                  cls
clus               [,1] [,2]
  CMKLR1 MUTATED      1    6
  CMKLR1 WILD-TYPE   15  150
     clus
vv    CMKLR1 MUTATED CMKLR1 WILD-TYPE
  NO               1               15
  YES              6              150
D79V11, continuous
D79V12, continuous
D79V13, multiclass
                                             clus
vv                                            CMKLR1 MUTATED CMKLR1 WILD-TYPE
  CURRENT REFORMED SMOKER FOR < OR = 15 YEARS              4               58
  CURRENT REFORMED SMOKER FOR > 15 YEARS                   2               44
  CURRENT SMOKER                                           1               27
  LIFELONG NON-SMOKER                                      0               24
D79V14, continuous
[1] "Remove cluster labels:" "CMKLR1 MUTATED"        
clus
  CMKLR1 MUTATED CMKLR1 WILD-TYPE 
               2               66 
      TCGA-05-4384       TCGA-05-4390       TCGA-05-4396       TCGA-05-4405 
"CMKLR1 WILD-TYPE" "CMKLR1 WILD-TYPE" "CMKLR1 WILD-TYPE" "CMKLR1 WILD-TYPE" 
      TCGA-05-4415       TCGA-05-4417       TCGA-05-4427       TCGA-05-4433 
"CMKLR1 WILD-TYPE" "CMKLR1 WILD-TYPE" "CMKLR1 WILD-TYPE" "CMKLR1 WILD-TYPE" 
      TCGA-05-5420       TCGA-05-5423       TCGA-05-5425       TCGA-05-5428 
"CMKLR1 WILD-TYPE" "CMKLR1 WILD-TYPE" "CMKLR1 WILD-TYPE" "CMKLR1 WILD-TYPE" 
      TCGA-35-4122       TCGA-35-4123       TCGA-35-5375       TCGA-38-4625 
"CMKLR1 WILD-TYPE" "CMKLR1 WILD-TYPE" "CMKLR1 WILD-TYPE" "CMKLR1 WILD-TYPE" 
      TCGA-38-4626       TCGA-44-2655       TCGA-44-2656       TCGA-44-2657 
"CMKLR1 WILD-TYPE" "CMKLR1 WILD-TYPE" "CMKLR1 WILD-TYPE" "CMKLR1 WILD-TYPE" 
      TCGA-44-2659       TCGA-44-2662       TCGA-44-2666       TCGA-44-2668 
"CMKLR1 WILD-TYPE" "CMKLR1 WILD-TYPE" "CMKLR1 WILD-TYPE" "CMKLR1 WILD-TYPE" 
      TCGA-44-3396       TCGA-44-3398       TCGA-44-3918       TCGA-44-4112 
"CMKLR1 WILD-TYPE" "CMKLR1 WILD-TYPE" "CMKLR1 WILD-TYPE" "CMKLR1 WILD-TYPE" 
      TCGA-44-5645       TCGA-44-6144       TCGA-44-6145       TCGA-44-6147 
"CMKLR1 WILD-TYPE" "CMKLR1 WILD-TYPE" "CMKLR1 WILD-TYPE" "CMKLR1 WILD-TYPE" 
      TCGA-44-6148       TCGA-44-6774       TCGA-44-6775       TCGA-44-6776 
"CMKLR1 WILD-TYPE" "CMKLR1 WILD-TYPE" "CMKLR1 WILD-TYPE" "CMKLR1 WILD-TYPE" 
      TCGA-44-6777       TCGA-44-6778       TCGA-44-6779       TCGA-49-4486 
"CMKLR1 WILD-TYPE" "CMKLR1 WILD-TYPE" "CMKLR1 WILD-TYPE" "CMKLR1 WILD-TYPE" 
      TCGA-49-4494       TCGA-49-4505       TCGA-55-1592       TCGA-55-1594 
"CMKLR1 WILD-TYPE" "CMKLR1 WILD-TYPE" "CMKLR1 WILD-TYPE" "CMKLR1 WILD-TYPE" 
      TCGA-55-1595       TCGA-55-1596       TCGA-55-5899       TCGA-55-6642 
"CMKLR1 WILD-TYPE" "CMKLR1 WILD-TYPE" "CMKLR1 WILD-TYPE" "CMKLR1 WILD-TYPE" 
      TCGA-55-6712       TCGA-64-1677       TCGA-64-1678       TCGA-64-1680 
"CMKLR1 WILD-TYPE" "CMKLR1 WILD-TYPE" "CMKLR1 WILD-TYPE" "CMKLR1 WILD-TYPE" 
      TCGA-64-5774       TCGA-64-5775       TCGA-64-5778       TCGA-64-5779 
"CMKLR1 WILD-TYPE" "CMKLR1 WILD-TYPE" "CMKLR1 WILD-TYPE" "CMKLR1 WILD-TYPE" 
      TCGA-64-5781       TCGA-73-4659       TCGA-73-4662       TCGA-73-4666 
"CMKLR1 WILD-TYPE" "CMKLR1 WILD-TYPE" "CMKLR1 WILD-TYPE" "CMKLR1 WILD-TYPE" 
      TCGA-73-4668       TCGA-73-4670       TCGA-73-4675       TCGA-73-4676 
"CMKLR1 WILD-TYPE" "CMKLR1 WILD-TYPE" "CMKLR1 WILD-TYPE" "CMKLR1 WILD-TYPE" 
      TCGA-91-6829       TCGA-91-6836 
"CMKLR1 WILD-TYPE" "CMKLR1 WILD-TYPE" 

Clustering(80) Variable = OR2W5 MUTATION ANALYSIS
D80V1, survival
                 sevent
clus2              0  1
  OR2W5 MUTATED    5  2
  OR2W5 WILD-TYPE 94 48
  OR2W5 MUTATED OR2W5 WILD-TYPE 
              7             142 
  OR2W5 MUTATED OR2W5 WILD-TYPE 
              2              48 
$`OR2W5 MUTATED`
TCGA-05-4417 TCGA-05-4432 TCGA-44-2662 TCGA-49-6743 TCGA-50-5044 TCGA-50-5935 
       14.93        25.02        15.78        12.13        20.48        21.47 
TCGA-67-3771 
        1.97 

$`OR2W5 WILD-TYPE`
TCGA-05-4249 TCGA-05-4250 TCGA-05-4382 TCGA-05-4384 TCGA-05-4390 TCGA-05-4396 
       38.07         3.98        19.92        14.01        37.02         9.96 
TCGA-05-4397 TCGA-05-4398 TCGA-05-4402 TCGA-05-4405 TCGA-05-4415 TCGA-05-4418 
       24.03        47.05         8.02        20.05         2.96         8.98 
TCGA-05-4420 TCGA-05-4424 TCGA-05-4426 TCGA-05-4427 TCGA-05-4430 TCGA-05-4433 
       29.95        30.02        26.01        26.01        25.02        24.00 
TCGA-05-4434 TCGA-05-5420 TCGA-05-5423 TCGA-05-5425 TCGA-05-5429 TCGA-05-5715 
       15.02         1.02         4.96         2.96         0.99         2.04 
TCGA-35-3615 TCGA-35-4122 TCGA-35-4123 TCGA-35-5375 TCGA-38-4625 TCGA-38-4626 
        0.46         7.36         5.95         8.68        47.61        85.32 
TCGA-38-4627 TCGA-38-4628 TCGA-38-4629 TCGA-38-4630 TCGA-38-4631 TCGA-38-4632 
       37.71        49.02        28.37        35.28        11.64        44.61 
TCGA-38-6178 TCGA-44-2655 TCGA-44-2656 TCGA-44-2657 TCGA-44-2659 TCGA-44-2661 
        5.19        18.87        19.10        13.15        17.39         3.39 
TCGA-44-2665 TCGA-44-2666 TCGA-44-2668 TCGA-44-3396 TCGA-44-3398 TCGA-44-3918 
       13.15         3.19         8.09        10.22         8.32         6.44 
TCGA-44-3919 TCGA-44-4112 TCGA-44-5643 TCGA-44-5645 TCGA-44-6144 TCGA-44-6145 
        6.21         4.60         3.48         6.84         0.30         3.35 
TCGA-44-6146 TCGA-44-6147 TCGA-44-6148 TCGA-44-6774 TCGA-44-6775 TCGA-44-6776 
        9.93         7.76         3.12         5.42         2.70        63.72 
TCGA-44-6777 TCGA-44-6778 TCGA-44-6779 TCGA-49-4486 TCGA-49-4487 TCGA-49-4488 
       32.45        36.49        16.41        76.21        28.11        28.57 
TCGA-49-4490 TCGA-49-4494 TCGA-49-4501 TCGA-49-4505 TCGA-49-4506 TCGA-49-4507 
       12.66        35.54        46.72        14.07        32.84         8.81 
TCGA-49-4510 TCGA-49-4512 TCGA-49-4514 TCGA-49-6742 TCGA-49-6744 TCGA-49-6745 
       29.46        29.75        43.20        15.02        12.99         4.93 
TCGA-50-5045 TCGA-50-5049 TCGA-50-5051 TCGA-50-5055 TCGA-50-5066 TCGA-50-5068 
       71.47        48.82        14.96        25.81         9.76        49.28 
TCGA-50-5072 TCGA-50-5930 TCGA-50-5931 TCGA-50-5932 TCGA-50-5933 TCGA-50-5936 
        8.05         9.27         8.78        35.87        77.88         8.45 
TCGA-50-5939 TCGA-50-5941 TCGA-50-5942 TCGA-50-5944 TCGA-50-5946 TCGA-50-6590 
       15.12         9.37         4.44        12.26        11.47        42.31 
TCGA-50-6591 TCGA-50-6592 TCGA-50-6593 TCGA-50-6594 TCGA-50-6595 TCGA-50-6597 
        3.88        25.51        11.05        12.16         6.21        33.37 
TCGA-55-1592 TCGA-55-1594 TCGA-55-1595 TCGA-55-1596 TCGA-55-5899 TCGA-55-6543 
       23.05        38.73        48.62        45.17         2.86         0.07 
TCGA-55-6642 TCGA-55-6712 TCGA-64-1676 TCGA-64-1677 TCGA-64-1678 TCGA-64-1680 
       32.61         0.79        56.81        20.65        39.09        37.02 
TCGA-64-5774 TCGA-64-5775 TCGA-64-5778 TCGA-64-5779 TCGA-64-5781 TCGA-64-5815 
       83.84         0.10        30.44        16.67        39.52         7.33 
TCGA-67-3770 TCGA-67-3772 TCGA-67-3773 TCGA-67-3774 TCGA-67-6215 TCGA-67-6216 
        0.99         0.59         2.04         0.59         0.89         0.69 
TCGA-67-6217 TCGA-71-6725 TCGA-73-4658 TCGA-73-4659 TCGA-73-4662 TCGA-73-4666 
       13.87         2.01        52.57        23.38        29.95        20.28 
TCGA-73-4668 TCGA-73-4670 TCGA-73-4675 TCGA-73-4676 TCGA-73-4677 TCGA-91-6828 
       15.35         0.46         1.32         4.01         1.25         1.22 
TCGA-91-6829 TCGA-91-6831 TCGA-91-6835 TCGA-91-6836 
       41.33         1.28         1.15         0.36 

  OR2W5 MUTATED OR2W5 WILD-TYPE 
           1.97            0.07 
  OR2W5 MUTATED OR2W5 WILD-TYPE 
          25.02           85.32 
  OR2W5 MUTATED OR2W5 WILD-TYPE 
          15.78           13.15 
[1] "2.0 - 25.0 (15.8)" "0.1 - 85.3 (13.2)"
     TCGA-05-4249      TCGA-05-4250      TCGA-05-4382      TCGA-05-4384 
"OR2W5 WILD-TYPE" "OR2W5 WILD-TYPE" "OR2W5 WILD-TYPE" "OR2W5 WILD-TYPE" 
     TCGA-05-4390      TCGA-05-4396      TCGA-05-4397      TCGA-05-4398 
"OR2W5 WILD-TYPE" "OR2W5 WILD-TYPE" "OR2W5 WILD-TYPE" "OR2W5 WILD-TYPE" 
     TCGA-05-4402      TCGA-05-4405      TCGA-05-4415      TCGA-05-4417 
"OR2W5 WILD-TYPE" "OR2W5 WILD-TYPE" "OR2W5 WILD-TYPE"   "OR2W5 MUTATED" 
     TCGA-05-4418      TCGA-05-4420      TCGA-05-4424      TCGA-05-4426 
"OR2W5 WILD-TYPE" "OR2W5 WILD-TYPE" "OR2W5 WILD-TYPE" "OR2W5 WILD-TYPE" 
     TCGA-05-4427      TCGA-05-4430      TCGA-05-4432      TCGA-05-4433 
"OR2W5 WILD-TYPE" "OR2W5 WILD-TYPE"   "OR2W5 MUTATED" "OR2W5 WILD-TYPE" 
     TCGA-05-4434      TCGA-05-5420      TCGA-05-5423      TCGA-05-5425 
"OR2W5 WILD-TYPE" "OR2W5 WILD-TYPE" "OR2W5 WILD-TYPE" "OR2W5 WILD-TYPE" 
     TCGA-05-5429      TCGA-05-5715      TCGA-35-3615      TCGA-35-4122 
"OR2W5 WILD-TYPE" "OR2W5 WILD-TYPE" "OR2W5 WILD-TYPE" "OR2W5 WILD-TYPE" 
     TCGA-35-4123      TCGA-35-5375      TCGA-38-4625      TCGA-38-4626 
"OR2W5 WILD-TYPE" "OR2W5 WILD-TYPE" "OR2W5 WILD-TYPE" "OR2W5 WILD-TYPE" 
     TCGA-38-4627      TCGA-38-4628      TCGA-38-4629      TCGA-38-4630 
"OR2W5 WILD-TYPE" "OR2W5 WILD-TYPE" "OR2W5 WILD-TYPE" "OR2W5 WILD-TYPE" 
     TCGA-38-4631      TCGA-38-4632      TCGA-38-6178      TCGA-44-2655 
"OR2W5 WILD-TYPE" "OR2W5 WILD-TYPE" "OR2W5 WILD-TYPE" "OR2W5 WILD-TYPE" 
     TCGA-44-2656      TCGA-44-2657      TCGA-44-2659      TCGA-44-2661 
"OR2W5 WILD-TYPE" "OR2W5 WILD-TYPE" "OR2W5 WILD-TYPE" "OR2W5 WILD-TYPE" 
     TCGA-44-2662      TCGA-44-2665      TCGA-44-2666      TCGA-44-2668 
  "OR2W5 MUTATED" "OR2W5 WILD-TYPE" "OR2W5 WILD-TYPE" "OR2W5 WILD-TYPE" 
     TCGA-44-3396      TCGA-44-3398      TCGA-44-3918      TCGA-44-3919 
"OR2W5 WILD-TYPE" "OR2W5 WILD-TYPE" "OR2W5 WILD-TYPE" "OR2W5 WILD-TYPE" 
     TCGA-44-4112      TCGA-44-5643      TCGA-44-5645      TCGA-44-6144 
"OR2W5 WILD-TYPE" "OR2W5 WILD-TYPE" "OR2W5 WILD-TYPE" "OR2W5 WILD-TYPE" 
     TCGA-44-6145      TCGA-44-6146      TCGA-44-6147      TCGA-44-6148 
"OR2W5 WILD-TYPE" "OR2W5 WILD-TYPE" "OR2W5 WILD-TYPE" "OR2W5 WILD-TYPE" 
     TCGA-44-6774      TCGA-44-6775      TCGA-44-6776      TCGA-44-6777 
"OR2W5 WILD-TYPE" "OR2W5 WILD-TYPE" "OR2W5 WILD-TYPE" "OR2W5 WILD-TYPE" 
     TCGA-44-6778      TCGA-44-6779      TCGA-49-4486      TCGA-49-4487 
"OR2W5 WILD-TYPE" "OR2W5 WILD-TYPE" "OR2W5 WILD-TYPE" "OR2W5 WILD-TYPE" 
     TCGA-49-4488      TCGA-49-4490      TCGA-49-4494      TCGA-49-4501 
"OR2W5 WILD-TYPE" "OR2W5 WILD-TYPE" "OR2W5 WILD-TYPE" "OR2W5 WILD-TYPE" 
     TCGA-49-4505      TCGA-49-4506      TCGA-49-4507      TCGA-49-4510 
"OR2W5 WILD-TYPE" "OR2W5 WILD-TYPE" "OR2W5 WILD-TYPE" "OR2W5 WILD-TYPE" 
     TCGA-49-4512      TCGA-49-4514      TCGA-49-6742      TCGA-49-6743 
"OR2W5 WILD-TYPE" "OR2W5 WILD-TYPE" "OR2W5 WILD-TYPE"   "OR2W5 MUTATED" 
     TCGA-49-6744      TCGA-49-6745      TCGA-50-5044      TCGA-50-5045 
"OR2W5 WILD-TYPE" "OR2W5 WILD-TYPE"   "OR2W5 MUTATED" "OR2W5 WILD-TYPE" 
     TCGA-50-5049      TCGA-50-5051      TCGA-50-5055      TCGA-50-5066 
"OR2W5 WILD-TYPE" "OR2W5 WILD-TYPE" "OR2W5 WILD-TYPE" "OR2W5 WILD-TYPE" 
     TCGA-50-5068      TCGA-50-5072      TCGA-50-5930      TCGA-50-5931 
"OR2W5 WILD-TYPE" "OR2W5 WILD-TYPE" "OR2W5 WILD-TYPE" "OR2W5 WILD-TYPE" 
     TCGA-50-5932      TCGA-50-5933      TCGA-50-5935      TCGA-50-5936 
"OR2W5 WILD-TYPE" "OR2W5 WILD-TYPE"   "OR2W5 MUTATED" "OR2W5 WILD-TYPE" 
     TCGA-50-5939      TCGA-50-5941      TCGA-50-5942      TCGA-50-5944 
"OR2W5 WILD-TYPE" "OR2W5 WILD-TYPE" "OR2W5 WILD-TYPE" "OR2W5 WILD-TYPE" 
     TCGA-50-5946      TCGA-50-6590      TCGA-50-6591      TCGA-50-6592 
"OR2W5 WILD-TYPE" "OR2W5 WILD-TYPE" "OR2W5 WILD-TYPE" "OR2W5 WILD-TYPE" 
     TCGA-50-6593      TCGA-50-6594      TCGA-50-6595      TCGA-50-6597 
"OR2W5 WILD-TYPE" "OR2W5 WILD-TYPE" "OR2W5 WILD-TYPE" "OR2W5 WILD-TYPE" 
     TCGA-55-1592      TCGA-55-1594      TCGA-55-1595      TCGA-55-1596 
"OR2W5 WILD-TYPE" "OR2W5 WILD-TYPE" "OR2W5 WILD-TYPE" "OR2W5 WILD-TYPE" 
     TCGA-55-5899      TCGA-55-6543      TCGA-55-6642      TCGA-55-6712 
"OR2W5 WILD-TYPE" "OR2W5 WILD-TYPE" "OR2W5 WILD-TYPE" "OR2W5 WILD-TYPE" 
     TCGA-64-1676      TCGA-64-1677      TCGA-64-1678      TCGA-64-1680 
"OR2W5 WILD-TYPE" "OR2W5 WILD-TYPE" "OR2W5 WILD-TYPE" "OR2W5 WILD-TYPE" 
     TCGA-64-5774      TCGA-64-5775      TCGA-64-5778      TCGA-64-5779 
"OR2W5 WILD-TYPE" "OR2W5 WILD-TYPE" "OR2W5 WILD-TYPE" "OR2W5 WILD-TYPE" 
     TCGA-64-5781      TCGA-64-5815      TCGA-67-3770      TCGA-67-3771 
"OR2W5 WILD-TYPE" "OR2W5 WILD-TYPE" "OR2W5 WILD-TYPE"   "OR2W5 MUTATED" 
     TCGA-67-3772      TCGA-67-3773      TCGA-67-3774      TCGA-67-6215 
"OR2W5 WILD-TYPE" "OR2W5 WILD-TYPE" "OR2W5 WILD-TYPE" "OR2W5 WILD-TYPE" 
     TCGA-67-6216      TCGA-67-6217      TCGA-71-6725      TCGA-73-4658 
"OR2W5 WILD-TYPE" "OR2W5 WILD-TYPE" "OR2W5 WILD-TYPE" "OR2W5 WILD-TYPE" 
     TCGA-73-4659      TCGA-73-4662      TCGA-73-4666      TCGA-73-4668 
"OR2W5 WILD-TYPE" "OR2W5 WILD-TYPE" "OR2W5 WILD-TYPE" "OR2W5 WILD-TYPE" 
     TCGA-73-4670      TCGA-73-4675      TCGA-73-4676      TCGA-73-4677 
"OR2W5 WILD-TYPE" "OR2W5 WILD-TYPE" "OR2W5 WILD-TYPE" "OR2W5 WILD-TYPE" 
     TCGA-91-6828      TCGA-91-6829      TCGA-91-6831      TCGA-91-6835 
"OR2W5 WILD-TYPE" "OR2W5 WILD-TYPE" "OR2W5 WILD-TYPE" "OR2W5 WILD-TYPE" 
     TCGA-91-6836 
"OR2W5 WILD-TYPE" 
     TCGA-05-4249      TCGA-05-4250      TCGA-05-4382      TCGA-05-4384 
"OR2W5 WILD-TYPE" "OR2W5 WILD-TYPE" "OR2W5 WILD-TYPE" "OR2W5 WILD-TYPE" 
     TCGA-05-4390      TCGA-05-4396      TCGA-05-4397      TCGA-05-4398 
"OR2W5 WILD-TYPE" "OR2W5 WILD-TYPE" "OR2W5 WILD-TYPE" "OR2W5 WILD-TYPE" 
     TCGA-05-4402      TCGA-05-4405      TCGA-05-4415      TCGA-05-4417 
"OR2W5 WILD-TYPE" "OR2W5 WILD-TYPE" "OR2W5 WILD-TYPE"   "OR2W5 MUTATED" 
     TCGA-05-4418      TCGA-05-4420      TCGA-05-4424      TCGA-05-4426 
"OR2W5 WILD-TYPE" "OR2W5 WILD-TYPE" "OR2W5 WILD-TYPE" "OR2W5 WILD-TYPE" 
     TCGA-05-4427      TCGA-05-4430      TCGA-05-4432      TCGA-05-4433 
"OR2W5 WILD-TYPE" "OR2W5 WILD-TYPE"   "OR2W5 MUTATED" "OR2W5 WILD-TYPE" 
     TCGA-05-4434      TCGA-05-5420      TCGA-05-5423      TCGA-05-5425 
"OR2W5 WILD-TYPE" "OR2W5 WILD-TYPE" "OR2W5 WILD-TYPE" "OR2W5 WILD-TYPE" 
     TCGA-05-5429      TCGA-05-5715      TCGA-35-3615      TCGA-35-4122 
"OR2W5 WILD-TYPE" "OR2W5 WILD-TYPE" "OR2W5 WILD-TYPE" "OR2W5 WILD-TYPE" 
     TCGA-35-4123      TCGA-35-5375      TCGA-38-4625      TCGA-38-4626 
"OR2W5 WILD-TYPE" "OR2W5 WILD-TYPE" "OR2W5 WILD-TYPE" "OR2W5 WILD-TYPE" 
     TCGA-38-4627      TCGA-38-4628      TCGA-38-4629      TCGA-38-4630 
"OR2W5 WILD-TYPE" "OR2W5 WILD-TYPE" "OR2W5 WILD-TYPE" "OR2W5 WILD-TYPE" 
     TCGA-38-4631      TCGA-38-4632      TCGA-38-6178      TCGA-44-2655 
"OR2W5 WILD-TYPE" "OR2W5 WILD-TYPE" "OR2W5 WILD-TYPE" "OR2W5 WILD-TYPE" 
     TCGA-44-2656      TCGA-44-2657      TCGA-44-2659      TCGA-44-2661 
"OR2W5 WILD-TYPE" "OR2W5 WILD-TYPE" "OR2W5 WILD-TYPE" "OR2W5 WILD-TYPE" 
     TCGA-44-2662      TCGA-44-2665      TCGA-44-2666      TCGA-44-2668 
  "OR2W5 MUTATED" "OR2W5 WILD-TYPE" "OR2W5 WILD-TYPE" "OR2W5 WILD-TYPE" 
     TCGA-44-3396      TCGA-44-3398      TCGA-44-3918      TCGA-44-3919 
"OR2W5 WILD-TYPE" "OR2W5 WILD-TYPE" "OR2W5 WILD-TYPE" "OR2W5 WILD-TYPE" 
     TCGA-44-4112      TCGA-44-5643      TCGA-44-5645      TCGA-44-6144 
"OR2W5 WILD-TYPE" "OR2W5 WILD-TYPE" "OR2W5 WILD-TYPE" "OR2W5 WILD-TYPE" 
     TCGA-44-6145      TCGA-44-6146      TCGA-44-6147      TCGA-44-6148 
"OR2W5 WILD-TYPE" "OR2W5 WILD-TYPE" "OR2W5 WILD-TYPE" "OR2W5 WILD-TYPE" 
     TCGA-44-6774      TCGA-44-6775      TCGA-44-6776      TCGA-44-6777 
"OR2W5 WILD-TYPE" "OR2W5 WILD-TYPE" "OR2W5 WILD-TYPE" "OR2W5 WILD-TYPE" 
     TCGA-44-6778      TCGA-44-6779      TCGA-49-4486      TCGA-49-4487 
"OR2W5 WILD-TYPE" "OR2W5 WILD-TYPE" "OR2W5 WILD-TYPE" "OR2W5 WILD-TYPE" 
     TCGA-49-4488      TCGA-49-4490      TCGA-49-4494      TCGA-49-4501 
"OR2W5 WILD-TYPE" "OR2W5 WILD-TYPE" "OR2W5 WILD-TYPE" "OR2W5 WILD-TYPE" 
     TCGA-49-4505      TCGA-49-4506      TCGA-49-4507      TCGA-49-4510 
"OR2W5 WILD-TYPE" "OR2W5 WILD-TYPE" "OR2W5 WILD-TYPE" "OR2W5 WILD-TYPE" 
     TCGA-49-4512      TCGA-49-4514      TCGA-49-6742      TCGA-49-6743 
"OR2W5 WILD-TYPE" "OR2W5 WILD-TYPE" "OR2W5 WILD-TYPE"   "OR2W5 MUTATED" 
     TCGA-49-6744      TCGA-49-6745      TCGA-50-5044      TCGA-50-5045 
"OR2W5 WILD-TYPE" "OR2W5 WILD-TYPE"   "OR2W5 MUTATED" "OR2W5 WILD-TYPE" 
     TCGA-50-5049      TCGA-50-5051      TCGA-50-5055      TCGA-50-5066 
"OR2W5 WILD-TYPE" "OR2W5 WILD-TYPE" "OR2W5 WILD-TYPE" "OR2W5 WILD-TYPE" 
     TCGA-50-5068      TCGA-50-5072      TCGA-50-5930      TCGA-50-5931 
"OR2W5 WILD-TYPE" "OR2W5 WILD-TYPE" "OR2W5 WILD-TYPE" "OR2W5 WILD-TYPE" 
     TCGA-50-5932      TCGA-50-5933      TCGA-50-5935      TCGA-50-5936 
"OR2W5 WILD-TYPE" "OR2W5 WILD-TYPE"   "OR2W5 MUTATED" "OR2W5 WILD-TYPE" 
     TCGA-50-5939      TCGA-50-5941      TCGA-50-5942      TCGA-50-5944 
"OR2W5 WILD-TYPE" "OR2W5 WILD-TYPE" "OR2W5 WILD-TYPE" "OR2W5 WILD-TYPE" 
     TCGA-50-5946      TCGA-50-6590      TCGA-50-6591      TCGA-50-6592 
"OR2W5 WILD-TYPE" "OR2W5 WILD-TYPE" "OR2W5 WILD-TYPE" "OR2W5 WILD-TYPE" 
     TCGA-50-6593      TCGA-50-6594      TCGA-50-6595      TCGA-50-6597 
"OR2W5 WILD-TYPE" "OR2W5 WILD-TYPE" "OR2W5 WILD-TYPE" "OR2W5 WILD-TYPE" 
     TCGA-55-1592      TCGA-55-1594      TCGA-55-1595      TCGA-55-1596 
"OR2W5 WILD-TYPE" "OR2W5 WILD-TYPE" "OR2W5 WILD-TYPE" "OR2W5 WILD-TYPE" 
     TCGA-55-5899      TCGA-55-6543      TCGA-55-6642      TCGA-55-6712 
"OR2W5 WILD-TYPE" "OR2W5 WILD-TYPE" "OR2W5 WILD-TYPE" "OR2W5 WILD-TYPE" 
     TCGA-64-1676      TCGA-64-1677      TCGA-64-1678      TCGA-64-1680 
"OR2W5 WILD-TYPE" "OR2W5 WILD-TYPE" "OR2W5 WILD-TYPE" "OR2W5 WILD-TYPE" 
     TCGA-64-5774      TCGA-64-5775      TCGA-64-5778      TCGA-64-5779 
"OR2W5 WILD-TYPE" "OR2W5 WILD-TYPE" "OR2W5 WILD-TYPE" "OR2W5 WILD-TYPE" 
     TCGA-64-5781      TCGA-64-5815      TCGA-67-3770      TCGA-67-3771 
"OR2W5 WILD-TYPE" "OR2W5 WILD-TYPE" "OR2W5 WILD-TYPE"   "OR2W5 MUTATED" 
     TCGA-67-3772      TCGA-67-3773      TCGA-67-3774      TCGA-67-6215 
"OR2W5 WILD-TYPE" "OR2W5 WILD-TYPE" "OR2W5 WILD-TYPE" "OR2W5 WILD-TYPE" 
     TCGA-67-6216      TCGA-67-6217      TCGA-71-6725      TCGA-73-4658 
"OR2W5 WILD-TYPE" "OR2W5 WILD-TYPE" "OR2W5 WILD-TYPE" "OR2W5 WILD-TYPE" 
     TCGA-73-4659      TCGA-73-4662      TCGA-73-4666      TCGA-73-4668 
"OR2W5 WILD-TYPE" "OR2W5 WILD-TYPE" "OR2W5 WILD-TYPE" "OR2W5 WILD-TYPE" 
     TCGA-73-4670      TCGA-73-4675      TCGA-73-4676      TCGA-73-4677 
"OR2W5 WILD-TYPE" "OR2W5 WILD-TYPE" "OR2W5 WILD-TYPE" "OR2W5 WILD-TYPE" 
     TCGA-91-6828      TCGA-91-6829      TCGA-91-6831      TCGA-91-6835 
"OR2W5 WILD-TYPE" "OR2W5 WILD-TYPE" "OR2W5 WILD-TYPE" "OR2W5 WILD-TYPE" 
     TCGA-91-6836 
"OR2W5 WILD-TYPE" 
     TCGA-05-4249      TCGA-05-4250      TCGA-05-4382      TCGA-05-4384 
"OR2W5 WILD-TYPE" "OR2W5 WILD-TYPE" "OR2W5 WILD-TYPE" "OR2W5 WILD-TYPE" 
     TCGA-05-4390      TCGA-05-4396      TCGA-05-4397      TCGA-05-4398 
"OR2W5 WILD-TYPE" "OR2W5 WILD-TYPE" "OR2W5 WILD-TYPE" "OR2W5 WILD-TYPE" 
     TCGA-05-4402      TCGA-05-4405      TCGA-05-4415      TCGA-05-4417 
"OR2W5 WILD-TYPE" "OR2W5 WILD-TYPE" "OR2W5 WILD-TYPE"   "OR2W5 MUTATED" 
     TCGA-05-4418      TCGA-05-4420      TCGA-05-4424      TCGA-05-4426 
"OR2W5 WILD-TYPE" "OR2W5 WILD-TYPE" "OR2W5 WILD-TYPE" "OR2W5 WILD-TYPE" 
     TCGA-05-4427      TCGA-05-4430      TCGA-05-4432      TCGA-05-4433 
"OR2W5 WILD-TYPE" "OR2W5 WILD-TYPE"   "OR2W5 MUTATED" "OR2W5 WILD-TYPE" 
     TCGA-05-4434      TCGA-05-5420      TCGA-05-5423      TCGA-05-5425 
"OR2W5 WILD-TYPE" "OR2W5 WILD-TYPE" "OR2W5 WILD-TYPE" "OR2W5 WILD-TYPE" 
     TCGA-05-5429      TCGA-05-5715      TCGA-35-3615      TCGA-35-4122 
"OR2W5 WILD-TYPE" "OR2W5 WILD-TYPE" "OR2W5 WILD-TYPE" "OR2W5 WILD-TYPE" 
     TCGA-35-4123      TCGA-35-5375      TCGA-38-4625      TCGA-38-4626 
"OR2W5 WILD-TYPE" "OR2W5 WILD-TYPE" "OR2W5 WILD-TYPE" "OR2W5 WILD-TYPE" 
     TCGA-38-4627      TCGA-38-4628      TCGA-38-4629      TCGA-38-4630 
"OR2W5 WILD-TYPE" "OR2W5 WILD-TYPE" "OR2W5 WILD-TYPE" "OR2W5 WILD-TYPE" 
     TCGA-38-4631      TCGA-38-4632      TCGA-38-6178      TCGA-44-2655 
"OR2W5 WILD-TYPE" "OR2W5 WILD-TYPE" "OR2W5 WILD-TYPE" "OR2W5 WILD-TYPE" 
     TCGA-44-2656      TCGA-44-2657      TCGA-44-2659      TCGA-44-2661 
"OR2W5 WILD-TYPE" "OR2W5 WILD-TYPE" "OR2W5 WILD-TYPE" "OR2W5 WILD-TYPE" 
     TCGA-44-2662      TCGA-44-2665      TCGA-44-2666      TCGA-44-2668 
  "OR2W5 MUTATED" "OR2W5 WILD-TYPE" "OR2W5 WILD-TYPE" "OR2W5 WILD-TYPE" 
     TCGA-44-3396      TCGA-44-3398      TCGA-44-3918      TCGA-44-3919 
"OR2W5 WILD-TYPE" "OR2W5 WILD-TYPE" "OR2W5 WILD-TYPE" "OR2W5 WILD-TYPE" 
     TCGA-44-4112      TCGA-44-5643      TCGA-44-5645      TCGA-44-6144 
"OR2W5 WILD-TYPE" "OR2W5 WILD-TYPE" "OR2W5 WILD-TYPE" "OR2W5 WILD-TYPE" 
     TCGA-44-6145      TCGA-44-6146      TCGA-44-6147      TCGA-44-6148 
"OR2W5 WILD-TYPE" "OR2W5 WILD-TYPE" "OR2W5 WILD-TYPE" "OR2W5 WILD-TYPE" 
     TCGA-44-6774      TCGA-44-6775      TCGA-44-6776      TCGA-44-6777 
"OR2W5 WILD-TYPE" "OR2W5 WILD-TYPE" "OR2W5 WILD-TYPE" "OR2W5 WILD-TYPE" 
     TCGA-44-6778      TCGA-44-6779      TCGA-49-4486      TCGA-49-4487 
"OR2W5 WILD-TYPE" "OR2W5 WILD-TYPE" "OR2W5 WILD-TYPE" "OR2W5 WILD-TYPE" 
     TCGA-49-4488      TCGA-49-4490      TCGA-49-4494      TCGA-49-4501 
"OR2W5 WILD-TYPE" "OR2W5 WILD-TYPE" "OR2W5 WILD-TYPE" "OR2W5 WILD-TYPE" 
     TCGA-49-4505      TCGA-49-4506      TCGA-49-4507      TCGA-49-4510 
"OR2W5 WILD-TYPE" "OR2W5 WILD-TYPE" "OR2W5 WILD-TYPE" "OR2W5 WILD-TYPE" 
     TCGA-49-4512      TCGA-49-4514      TCGA-49-6742      TCGA-49-6743 
"OR2W5 WILD-TYPE" "OR2W5 WILD-TYPE" "OR2W5 WILD-TYPE"   "OR2W5 MUTATED" 
     TCGA-49-6744      TCGA-49-6745      TCGA-50-5044      TCGA-50-5045 
"OR2W5 WILD-TYPE" "OR2W5 WILD-TYPE"   "OR2W5 MUTATED" "OR2W5 WILD-TYPE" 
     TCGA-50-5049      TCGA-50-5051      TCGA-50-5055      TCGA-50-5066 
"OR2W5 WILD-TYPE" "OR2W5 WILD-TYPE" "OR2W5 WILD-TYPE" "OR2W5 WILD-TYPE" 
     TCGA-50-5068      TCGA-50-5072      TCGA-50-5930      TCGA-50-5931 
"OR2W5 WILD-TYPE" "OR2W5 WILD-TYPE" "OR2W5 WILD-TYPE" "OR2W5 WILD-TYPE" 
     TCGA-50-5932      TCGA-50-5933      TCGA-50-5935      TCGA-50-5936 
"OR2W5 WILD-TYPE" "OR2W5 WILD-TYPE"   "OR2W5 MUTATED" "OR2W5 WILD-TYPE" 
     TCGA-50-5939      TCGA-50-5941      TCGA-50-5942      TCGA-50-5944 
"OR2W5 WILD-TYPE" "OR2W5 WILD-TYPE" "OR2W5 WILD-TYPE" "OR2W5 WILD-TYPE" 
     TCGA-50-5946      TCGA-50-6590      TCGA-50-6591      TCGA-50-6592 
"OR2W5 WILD-TYPE" "OR2W5 WILD-TYPE" "OR2W5 WILD-TYPE" "OR2W5 WILD-TYPE" 
     TCGA-50-6593      TCGA-50-6594      TCGA-50-6595      TCGA-50-6597 
"OR2W5 WILD-TYPE" "OR2W5 WILD-TYPE" "OR2W5 WILD-TYPE" "OR2W5 WILD-TYPE" 
     TCGA-55-1592      TCGA-55-1594      TCGA-55-1595      TCGA-55-1596 
"OR2W5 WILD-TYPE" "OR2W5 WILD-TYPE" "OR2W5 WILD-TYPE" "OR2W5 WILD-TYPE" 
     TCGA-55-5899      TCGA-55-6543      TCGA-55-6642      TCGA-55-6712 
"OR2W5 WILD-TYPE" "OR2W5 WILD-TYPE" "OR2W5 WILD-TYPE" "OR2W5 WILD-TYPE" 
     TCGA-64-1676      TCGA-64-1677      TCGA-64-1678      TCGA-64-1680 
"OR2W5 WILD-TYPE" "OR2W5 WILD-TYPE" "OR2W5 WILD-TYPE" "OR2W5 WILD-TYPE" 
     TCGA-64-5774      TCGA-64-5775      TCGA-64-5778      TCGA-64-5779 
"OR2W5 WILD-TYPE" "OR2W5 WILD-TYPE" "OR2W5 WILD-TYPE" "OR2W5 WILD-TYPE" 
     TCGA-64-5781      TCGA-64-5815      TCGA-67-3770      TCGA-67-3771 
"OR2W5 WILD-TYPE" "OR2W5 WILD-TYPE" "OR2W5 WILD-TYPE"   "OR2W5 MUTATED" 
     TCGA-67-3772      TCGA-67-3773      TCGA-67-3774      TCGA-67-6215 
"OR2W5 WILD-TYPE" "OR2W5 WILD-TYPE" "OR2W5 WILD-TYPE" "OR2W5 WILD-TYPE" 
     TCGA-67-6216      TCGA-67-6217      TCGA-71-6725      TCGA-73-4658 
"OR2W5 WILD-TYPE" "OR2W5 WILD-TYPE" "OR2W5 WILD-TYPE" "OR2W5 WILD-TYPE" 
     TCGA-73-4659      TCGA-73-4662      TCGA-73-4666      TCGA-73-4668 
"OR2W5 WILD-TYPE" "OR2W5 WILD-TYPE" "OR2W5 WILD-TYPE" "OR2W5 WILD-TYPE" 
     TCGA-73-4670      TCGA-73-4675      TCGA-73-4676      TCGA-73-4677 
"OR2W5 WILD-TYPE" "OR2W5 WILD-TYPE" "OR2W5 WILD-TYPE" "OR2W5 WILD-TYPE" 
     TCGA-91-6828      TCGA-91-6829      TCGA-91-6831      TCGA-91-6835 
"OR2W5 WILD-TYPE" "OR2W5 WILD-TYPE" "OR2W5 WILD-TYPE" "OR2W5 WILD-TYPE" 
     TCGA-91-6836 
"OR2W5 WILD-TYPE" 
[1] "hr=" "1.4"
D80V2, continuous
D80V3, binary
[1] "tbl2"
                 cls
clus              [,1] [,2]
  OR2W5 MUTATED      5    2
  OR2W5 WILD-TYPE   88   77
        clus
vv       OR2W5 MUTATED OR2W5 WILD-TYPE
  FEMALE             5              88
  MALE               2              77
D80V4, continuous
D80V5, multiclass
D80V6, multiclass
    clus
vv   OR2W5 MUTATED OR2W5 WILD-TYPE
  T1             3              38
  T2             3             105
  T3             0              14
  T4             1               7
D80V7, multiclass
       clus
vv      OR2W5 MUTATED OR2W5 WILD-TYPE
  N0                4              91
  N1                2              35
  N2+N3             1              34
D80V8, multiclass
    clus
vv   OR2W5 MUTATED OR2W5 WILD-TYPE
  M0             6             131
  M1             0               9
  MX             1              21
D80V9, multiclass
     clus
vv    OR2W5 MUTATED OR2W5 WILD-TYPE
  I               4              84
  II              1              32
  III             2              37
  IV              0               9
D80V10, binary
[1] "tbl2"
                 cls
clus              [,1] [,2]
  OR2W5 MUTATED      1    6
  OR2W5 WILD-TYPE   15  150
     clus
vv    OR2W5 MUTATED OR2W5 WILD-TYPE
  NO              1              15
  YES             6             150
D80V11, continuous
D80V12, continuous
[1] "Remove cluster labels:" "OR2W5 MUTATED"         
clus
  OR2W5 MUTATED OR2W5 WILD-TYPE 
              2              80 
     TCGA-05-4384      TCGA-05-4390      TCGA-05-4396      TCGA-05-4403 
"OR2W5 WILD-TYPE" "OR2W5 WILD-TYPE" "OR2W5 WILD-TYPE" "OR2W5 WILD-TYPE" 
     TCGA-05-4405      TCGA-05-4410      TCGA-05-4415      TCGA-05-4424 
"OR2W5 WILD-TYPE" "OR2W5 WILD-TYPE" "OR2W5 WILD-TYPE" "OR2W5 WILD-TYPE" 
     TCGA-05-4427      TCGA-05-4433      TCGA-05-5420      TCGA-05-5423 
"OR2W5 WILD-TYPE" "OR2W5 WILD-TYPE" "OR2W5 WILD-TYPE" "OR2W5 WILD-TYPE" 
     TCGA-05-5425      TCGA-05-5428      TCGA-35-4122      TCGA-35-4123 
"OR2W5 WILD-TYPE" "OR2W5 WILD-TYPE" "OR2W5 WILD-TYPE" "OR2W5 WILD-TYPE" 
     TCGA-35-5375      TCGA-38-4629      TCGA-38-4632      TCGA-44-2655 
"OR2W5 WILD-TYPE" "OR2W5 WILD-TYPE" "OR2W5 WILD-TYPE" "OR2W5 WILD-TYPE" 
     TCGA-44-2656      TCGA-44-2657      TCGA-44-2659      TCGA-44-2668 
"OR2W5 WILD-TYPE" "OR2W5 WILD-TYPE" "OR2W5 WILD-TYPE" "OR2W5 WILD-TYPE" 
     TCGA-44-3398      TCGA-44-3918      TCGA-44-4112      TCGA-44-5645 
"OR2W5 WILD-TYPE" "OR2W5 WILD-TYPE" "OR2W5 WILD-TYPE" "OR2W5 WILD-TYPE" 
     TCGA-44-6145      TCGA-44-6146      TCGA-44-6147      TCGA-44-6148 
"OR2W5 WILD-TYPE" "OR2W5 WILD-TYPE" "OR2W5 WILD-TYPE" "OR2W5 WILD-TYPE" 
     TCGA-44-6775      TCGA-44-6776      TCGA-44-6777      TCGA-44-6778 
"OR2W5 WILD-TYPE" "OR2W5 WILD-TYPE" "OR2W5 WILD-TYPE" "OR2W5 WILD-TYPE" 
     TCGA-44-6779      TCGA-49-4486      TCGA-49-4488      TCGA-49-4494 
"OR2W5 WILD-TYPE" "OR2W5 WILD-TYPE" "OR2W5 WILD-TYPE" "OR2W5 WILD-TYPE" 
     TCGA-49-4505      TCGA-49-4507      TCGA-50-5051      TCGA-50-5072 
"OR2W5 WILD-TYPE" "OR2W5 WILD-TYPE" "OR2W5 WILD-TYPE" "OR2W5 WILD-TYPE" 
     TCGA-50-5939      TCGA-50-5942      TCGA-50-5946      TCGA-50-6590 
"OR2W5 WILD-TYPE" "OR2W5 WILD-TYPE" "OR2W5 WILD-TYPE" "OR2W5 WILD-TYPE" 
     TCGA-50-6594      TCGA-50-6595      TCGA-55-1592      TCGA-55-1595 
"OR2W5 WILD-TYPE" "OR2W5 WILD-TYPE" "OR2W5 WILD-TYPE" "OR2W5 WILD-TYPE" 
     TCGA-55-6543      TCGA-55-6712      TCGA-64-1678      TCGA-64-1680 
"OR2W5 WILD-TYPE" "OR2W5 WILD-TYPE" "OR2W5 WILD-TYPE" "OR2W5 WILD-TYPE" 
     TCGA-64-5774      TCGA-64-5778      TCGA-64-5779      TCGA-64-5781 
"OR2W5 WILD-TYPE" "OR2W5 WILD-TYPE" "OR2W5 WILD-TYPE" "OR2W5 WILD-TYPE" 
     TCGA-64-5815      TCGA-67-6217      TCGA-73-4659      TCGA-73-4662 
"OR2W5 WILD-TYPE" "OR2W5 WILD-TYPE" "OR2W5 WILD-TYPE" "OR2W5 WILD-TYPE" 
     TCGA-73-4666      TCGA-73-4668      TCGA-73-4670      TCGA-73-4675 
"OR2W5 WILD-TYPE" "OR2W5 WILD-TYPE" "OR2W5 WILD-TYPE" "OR2W5 WILD-TYPE" 
     TCGA-73-4676      TCGA-73-4677      TCGA-75-5122      TCGA-75-5125 
"OR2W5 WILD-TYPE" "OR2W5 WILD-TYPE" "OR2W5 WILD-TYPE" "OR2W5 WILD-TYPE" 
     TCGA-75-5126      TCGA-75-5146      TCGA-75-6206      TCGA-75-6207 
"OR2W5 WILD-TYPE" "OR2W5 WILD-TYPE" "OR2W5 WILD-TYPE" "OR2W5 WILD-TYPE" 
     TCGA-80-5611      TCGA-91-6828      TCGA-91-6829      TCGA-91-6835 
"OR2W5 WILD-TYPE" "OR2W5 WILD-TYPE" "OR2W5 WILD-TYPE" "OR2W5 WILD-TYPE" 
D80V13, multiclass
                                             clus
vv                                            OR2W5 MUTATED OR2W5 WILD-TYPE
  CURRENT REFORMED SMOKER FOR < OR = 15 YEARS             3              59
  CURRENT REFORMED SMOKER FOR > 15 YEARS                  1              45
  CURRENT SMOKER                                          1              27
  LIFELONG NON-SMOKER                                     0              24
D80V14, continuous
[1] "Remove cluster labels:" "OR2W5 MUTATED"         
clus
  OR2W5 MUTATED OR2W5 WILD-TYPE 
              2              66 
     TCGA-05-4384      TCGA-05-4390      TCGA-05-4396      TCGA-05-4405 
"OR2W5 WILD-TYPE" "OR2W5 WILD-TYPE" "OR2W5 WILD-TYPE" "OR2W5 WILD-TYPE" 
     TCGA-05-4410      TCGA-05-4415      TCGA-05-4424      TCGA-05-4427 
"OR2W5 WILD-TYPE" "OR2W5 WILD-TYPE" "OR2W5 WILD-TYPE" "OR2W5 WILD-TYPE" 
     TCGA-05-4433      TCGA-05-5420      TCGA-05-5423      TCGA-05-5425 
"OR2W5 WILD-TYPE" "OR2W5 WILD-TYPE" "OR2W5 WILD-TYPE" "OR2W5 WILD-TYPE" 
     TCGA-05-5428      TCGA-35-4122      TCGA-35-4123      TCGA-35-5375 
"OR2W5 WILD-TYPE" "OR2W5 WILD-TYPE" "OR2W5 WILD-TYPE" "OR2W5 WILD-TYPE" 
     TCGA-38-4625      TCGA-38-4626      TCGA-44-2655      TCGA-44-2656 
"OR2W5 WILD-TYPE" "OR2W5 WILD-TYPE" "OR2W5 WILD-TYPE" "OR2W5 WILD-TYPE" 
     TCGA-44-2657      TCGA-44-2659      TCGA-44-2666      TCGA-44-2668 
"OR2W5 WILD-TYPE" "OR2W5 WILD-TYPE" "OR2W5 WILD-TYPE" "OR2W5 WILD-TYPE" 
     TCGA-44-3396      TCGA-44-3398      TCGA-44-3918      TCGA-44-4112 
"OR2W5 WILD-TYPE" "OR2W5 WILD-TYPE" "OR2W5 WILD-TYPE" "OR2W5 WILD-TYPE" 
     TCGA-44-5645      TCGA-44-6144      TCGA-44-6145      TCGA-44-6147 
"OR2W5 WILD-TYPE" "OR2W5 WILD-TYPE" "OR2W5 WILD-TYPE" "OR2W5 WILD-TYPE" 
     TCGA-44-6148      TCGA-44-6774      TCGA-44-6775      TCGA-44-6776 
"OR2W5 WILD-TYPE" "OR2W5 WILD-TYPE" "OR2W5 WILD-TYPE" "OR2W5 WILD-TYPE" 
     TCGA-44-6777      TCGA-44-6778      TCGA-44-6779      TCGA-49-4486 
"OR2W5 WILD-TYPE" "OR2W5 WILD-TYPE" "OR2W5 WILD-TYPE" "OR2W5 WILD-TYPE" 
     TCGA-49-4494      TCGA-49-4505      TCGA-55-1592      TCGA-55-1594 
"OR2W5 WILD-TYPE" "OR2W5 WILD-TYPE" "OR2W5 WILD-TYPE" "OR2W5 WILD-TYPE" 
     TCGA-55-1595      TCGA-55-1596      TCGA-55-5899      TCGA-55-6642 
"OR2W5 WILD-TYPE" "OR2W5 WILD-TYPE" "OR2W5 WILD-TYPE" "OR2W5 WILD-TYPE" 
     TCGA-55-6712      TCGA-64-1677      TCGA-64-1678      TCGA-64-1680 
"OR2W5 WILD-TYPE" "OR2W5 WILD-TYPE" "OR2W5 WILD-TYPE" "OR2W5 WILD-TYPE" 
     TCGA-64-5774      TCGA-64-5775      TCGA-64-5778      TCGA-64-5779 
"OR2W5 WILD-TYPE" "OR2W5 WILD-TYPE" "OR2W5 WILD-TYPE" "OR2W5 WILD-TYPE" 
     TCGA-64-5781      TCGA-73-4659      TCGA-73-4662      TCGA-73-4666 
"OR2W5 WILD-TYPE" "OR2W5 WILD-TYPE" "OR2W5 WILD-TYPE" "OR2W5 WILD-TYPE" 
     TCGA-73-4668      TCGA-73-4670      TCGA-73-4675      TCGA-73-4676 
"OR2W5 WILD-TYPE" "OR2W5 WILD-TYPE" "OR2W5 WILD-TYPE" "OR2W5 WILD-TYPE" 
     TCGA-91-6829      TCGA-91-6836 
"OR2W5 WILD-TYPE" "OR2W5 WILD-TYPE" 

Clustering(81) Variable = ADAMTS2 MUTATION ANALYSIS
D81V1, survival
                   sevent
clus2                0  1
  ADAMTS2 MUTATED    8  4
  ADAMTS2 WILD-TYPE 91 46
  ADAMTS2 MUTATED ADAMTS2 WILD-TYPE 
               12               137 
  ADAMTS2 MUTATED ADAMTS2 WILD-TYPE 
                4                46 
$`ADAMTS2 MUTATED`
TCGA-05-4382 TCGA-05-4390 TCGA-05-4397 TCGA-05-4427 TCGA-44-3396 TCGA-44-4112 
       19.92        37.02        24.03        26.01        10.22         4.60 
TCGA-44-6777 TCGA-50-6593 TCGA-55-6642 TCGA-64-1676 TCGA-73-4659 TCGA-91-6831 
       32.45        11.05        32.61        56.81        23.38         1.28 

$`ADAMTS2 WILD-TYPE`
TCGA-05-4249 TCGA-05-4250 TCGA-05-4384 TCGA-05-4396 TCGA-05-4398 TCGA-05-4402 
       38.07         3.98        14.01         9.96        47.05         8.02 
TCGA-05-4405 TCGA-05-4415 TCGA-05-4417 TCGA-05-4418 TCGA-05-4420 TCGA-05-4424 
       20.05         2.96        14.93         8.98        29.95        30.02 
TCGA-05-4426 TCGA-05-4430 TCGA-05-4432 TCGA-05-4433 TCGA-05-4434 TCGA-05-5420 
       26.01        25.02        25.02        24.00        15.02         1.02 
TCGA-05-5423 TCGA-05-5425 TCGA-05-5429 TCGA-05-5715 TCGA-35-3615 TCGA-35-4122 
        4.96         2.96         0.99         2.04         0.46         7.36 
TCGA-35-4123 TCGA-35-5375 TCGA-38-4625 TCGA-38-4626 TCGA-38-4627 TCGA-38-4628 
        5.95         8.68        47.61        85.32        37.71        49.02 
TCGA-38-4629 TCGA-38-4630 TCGA-38-4631 TCGA-38-4632 TCGA-38-6178 TCGA-44-2655 
       28.37        35.28        11.64        44.61         5.19        18.87 
TCGA-44-2656 TCGA-44-2657 TCGA-44-2659 TCGA-44-2661 TCGA-44-2662 TCGA-44-2665 
       19.10        13.15        17.39         3.39        15.78        13.15 
TCGA-44-2666 TCGA-44-2668 TCGA-44-3398 TCGA-44-3918 TCGA-44-3919 TCGA-44-5643 
        3.19         8.09         8.32         6.44         6.21         3.48 
TCGA-44-5645 TCGA-44-6144 TCGA-44-6145 TCGA-44-6146 TCGA-44-6147 TCGA-44-6148 
        6.84         0.30         3.35         9.93         7.76         3.12 
TCGA-44-6774 TCGA-44-6775 TCGA-44-6776 TCGA-44-6778 TCGA-44-6779 TCGA-49-4486 
        5.42         2.70        63.72        36.49        16.41        76.21 
TCGA-49-4487 TCGA-49-4488 TCGA-49-4490 TCGA-49-4494 TCGA-49-4501 TCGA-49-4505 
       28.11        28.57        12.66        35.54        46.72        14.07 
TCGA-49-4506 TCGA-49-4507 TCGA-49-4510 TCGA-49-4512 TCGA-49-4514 TCGA-49-6742 
       32.84         8.81        29.46        29.75        43.20        15.02 
TCGA-49-6743 TCGA-49-6744 TCGA-49-6745 TCGA-50-5044 TCGA-50-5045 TCGA-50-5049 
       12.13        12.99         4.93        20.48        71.47        48.82 
TCGA-50-5051 TCGA-50-5055 TCGA-50-5066 TCGA-50-5068 TCGA-50-5072 TCGA-50-5930 
       14.96        25.81         9.76        49.28         8.05         9.27 
TCGA-50-5931 TCGA-50-5932 TCGA-50-5933 TCGA-50-5935 TCGA-50-5936 TCGA-50-5939 
        8.78        35.87        77.88        21.47         8.45        15.12 
TCGA-50-5941 TCGA-50-5942 TCGA-50-5944 TCGA-50-5946 TCGA-50-6590 TCGA-50-6591 
        9.37         4.44        12.26        11.47        42.31         3.88 
TCGA-50-6592 TCGA-50-6594 TCGA-50-6595 TCGA-50-6597 TCGA-55-1592 TCGA-55-1594 
       25.51        12.16         6.21        33.37        23.05        38.73 
TCGA-55-1595 TCGA-55-1596 TCGA-55-5899 TCGA-55-6543 TCGA-55-6712 TCGA-64-1677 
       48.62        45.17         2.86         0.07         0.79        20.65 
TCGA-64-1678 TCGA-64-1680 TCGA-64-5774 TCGA-64-5775 TCGA-64-5778 TCGA-64-5779 
       39.09        37.02        83.84         0.10        30.44        16.67 
TCGA-64-5781 TCGA-64-5815 TCGA-67-3770 TCGA-67-3771 TCGA-67-3772 TCGA-67-3773 
       39.52         7.33         0.99         1.97         0.59         2.04 
TCGA-67-3774 TCGA-67-6215 TCGA-67-6216 TCGA-67-6217 TCGA-71-6725 TCGA-73-4658 
        0.59         0.89         0.69        13.87         2.01        52.57 
TCGA-73-4662 TCGA-73-4666 TCGA-73-4668 TCGA-73-4670 TCGA-73-4675 TCGA-73-4676 
       29.95        20.28        15.35         0.46         1.32         4.01 
TCGA-73-4677 TCGA-91-6828 TCGA-91-6829 TCGA-91-6835 TCGA-91-6836 
        1.25         1.22        41.33         1.15         0.36 

  ADAMTS2 MUTATED ADAMTS2 WILD-TYPE 
             1.28              0.07 
  ADAMTS2 MUTATED ADAMTS2 WILD-TYPE 
            56.81             85.32 
  ADAMTS2 MUTATED ADAMTS2 WILD-TYPE 
           23.705            13.150 
[1] "1.3 - 56.8 (23.7)" "0.1 - 85.3 (13.2)"
       TCGA-05-4249        TCGA-05-4250        TCGA-05-4382        TCGA-05-4384 
"ADAMTS2 WILD-TYPE" "ADAMTS2 WILD-TYPE"   "ADAMTS2 MUTATED" "ADAMTS2 WILD-TYPE" 
       TCGA-05-4390        TCGA-05-4396        TCGA-05-4397        TCGA-05-4398 
  "ADAMTS2 MUTATED" "ADAMTS2 WILD-TYPE"   "ADAMTS2 MUTATED" "ADAMTS2 WILD-TYPE" 
       TCGA-05-4402        TCGA-05-4405        TCGA-05-4415        TCGA-05-4417 
"ADAMTS2 WILD-TYPE" "ADAMTS2 WILD-TYPE" "ADAMTS2 WILD-TYPE" "ADAMTS2 WILD-TYPE" 
       TCGA-05-4418        TCGA-05-4420        TCGA-05-4424        TCGA-05-4426 
"ADAMTS2 WILD-TYPE" "ADAMTS2 WILD-TYPE" "ADAMTS2 WILD-TYPE" "ADAMTS2 WILD-TYPE" 
       TCGA-05-4427        TCGA-05-4430        TCGA-05-4432        TCGA-05-4433 
  "ADAMTS2 MUTATED" "ADAMTS2 WILD-TYPE" "ADAMTS2 WILD-TYPE" "ADAMTS2 WILD-TYPE" 
       TCGA-05-4434        TCGA-05-5420        TCGA-05-5423        TCGA-05-5425 
"ADAMTS2 WILD-TYPE" "ADAMTS2 WILD-TYPE" "ADAMTS2 WILD-TYPE" "ADAMTS2 WILD-TYPE" 
       TCGA-05-5429        TCGA-05-5715        TCGA-35-3615        TCGA-35-4122 
"ADAMTS2 WILD-TYPE" "ADAMTS2 WILD-TYPE" "ADAMTS2 WILD-TYPE" "ADAMTS2 WILD-TYPE" 
       TCGA-35-4123        TCGA-35-5375        TCGA-38-4625        TCGA-38-4626 
"ADAMTS2 WILD-TYPE" "ADAMTS2 WILD-TYPE" "ADAMTS2 WILD-TYPE" "ADAMTS2 WILD-TYPE" 
       TCGA-38-4627        TCGA-38-4628        TCGA-38-4629        TCGA-38-4630 
"ADAMTS2 WILD-TYPE" "ADAMTS2 WILD-TYPE" "ADAMTS2 WILD-TYPE" "ADAMTS2 WILD-TYPE" 
       TCGA-38-4631        TCGA-38-4632        TCGA-38-6178        TCGA-44-2655 
"ADAMTS2 WILD-TYPE" "ADAMTS2 WILD-TYPE" "ADAMTS2 WILD-TYPE" "ADAMTS2 WILD-TYPE" 
       TCGA-44-2656        TCGA-44-2657        TCGA-44-2659        TCGA-44-2661 
"ADAMTS2 WILD-TYPE" "ADAMTS2 WILD-TYPE" "ADAMTS2 WILD-TYPE" "ADAMTS2 WILD-TYPE" 
       TCGA-44-2662        TCGA-44-2665        TCGA-44-2666        TCGA-44-2668 
"ADAMTS2 WILD-TYPE" "ADAMTS2 WILD-TYPE" "ADAMTS2 WILD-TYPE" "ADAMTS2 WILD-TYPE" 
       TCGA-44-3396        TCGA-44-3398        TCGA-44-3918        TCGA-44-3919 
  "ADAMTS2 MUTATED" "ADAMTS2 WILD-TYPE" "ADAMTS2 WILD-TYPE" "ADAMTS2 WILD-TYPE" 
       TCGA-44-4112        TCGA-44-5643        TCGA-44-5645        TCGA-44-6144 
  "ADAMTS2 MUTATED" "ADAMTS2 WILD-TYPE" "ADAMTS2 WILD-TYPE" "ADAMTS2 WILD-TYPE" 
       TCGA-44-6145        TCGA-44-6146        TCGA-44-6147        TCGA-44-6148 
"ADAMTS2 WILD-TYPE" "ADAMTS2 WILD-TYPE" "ADAMTS2 WILD-TYPE" "ADAMTS2 WILD-TYPE" 
       TCGA-44-6774        TCGA-44-6775        TCGA-44-6776        TCGA-44-6777 
"ADAMTS2 WILD-TYPE" "ADAMTS2 WILD-TYPE" "ADAMTS2 WILD-TYPE"   "ADAMTS2 MUTATED" 
       TCGA-44-6778        TCGA-44-6779        TCGA-49-4486        TCGA-49-4487 
"ADAMTS2 WILD-TYPE" "ADAMTS2 WILD-TYPE" "ADAMTS2 WILD-TYPE" "ADAMTS2 WILD-TYPE" 
       TCGA-49-4488        TCGA-49-4490        TCGA-49-4494        TCGA-49-4501 
"ADAMTS2 WILD-TYPE" "ADAMTS2 WILD-TYPE" "ADAMTS2 WILD-TYPE" "ADAMTS2 WILD-TYPE" 
       TCGA-49-4505        TCGA-49-4506        TCGA-49-4507        TCGA-49-4510 
"ADAMTS2 WILD-TYPE" "ADAMTS2 WILD-TYPE" "ADAMTS2 WILD-TYPE" "ADAMTS2 WILD-TYPE" 
       TCGA-49-4512        TCGA-49-4514        TCGA-49-6742        TCGA-49-6743 
"ADAMTS2 WILD-TYPE" "ADAMTS2 WILD-TYPE" "ADAMTS2 WILD-TYPE" "ADAMTS2 WILD-TYPE" 
       TCGA-49-6744        TCGA-49-6745        TCGA-50-5044        TCGA-50-5045 
"ADAMTS2 WILD-TYPE" "ADAMTS2 WILD-TYPE" "ADAMTS2 WILD-TYPE" "ADAMTS2 WILD-TYPE" 
       TCGA-50-5049        TCGA-50-5051        TCGA-50-5055        TCGA-50-5066 
"ADAMTS2 WILD-TYPE" "ADAMTS2 WILD-TYPE" "ADAMTS2 WILD-TYPE" "ADAMTS2 WILD-TYPE" 
       TCGA-50-5068        TCGA-50-5072        TCGA-50-5930        TCGA-50-5931 
"ADAMTS2 WILD-TYPE" "ADAMTS2 WILD-TYPE" "ADAMTS2 WILD-TYPE" "ADAMTS2 WILD-TYPE" 
       TCGA-50-5932        TCGA-50-5933        TCGA-50-5935        TCGA-50-5936 
"ADAMTS2 WILD-TYPE" "ADAMTS2 WILD-TYPE" "ADAMTS2 WILD-TYPE" "ADAMTS2 WILD-TYPE" 
       TCGA-50-5939        TCGA-50-5941        TCGA-50-5942        TCGA-50-5944 
"ADAMTS2 WILD-TYPE" "ADAMTS2 WILD-TYPE" "ADAMTS2 WILD-TYPE" "ADAMTS2 WILD-TYPE" 
       TCGA-50-5946        TCGA-50-6590        TCGA-50-6591        TCGA-50-6592 
"ADAMTS2 WILD-TYPE" "ADAMTS2 WILD-TYPE" "ADAMTS2 WILD-TYPE" "ADAMTS2 WILD-TYPE" 
       TCGA-50-6593        TCGA-50-6594        TCGA-50-6595        TCGA-50-6597 
  "ADAMTS2 MUTATED" "ADAMTS2 WILD-TYPE" "ADAMTS2 WILD-TYPE" "ADAMTS2 WILD-TYPE" 
       TCGA-55-1592        TCGA-55-1594        TCGA-55-1595        TCGA-55-1596 
"ADAMTS2 WILD-TYPE" "ADAMTS2 WILD-TYPE" "ADAMTS2 WILD-TYPE" "ADAMTS2 WILD-TYPE" 
       TCGA-55-5899        TCGA-55-6543        TCGA-55-6642        TCGA-55-6712 
"ADAMTS2 WILD-TYPE" "ADAMTS2 WILD-TYPE"   "ADAMTS2 MUTATED" "ADAMTS2 WILD-TYPE" 
       TCGA-64-1676        TCGA-64-1677        TCGA-64-1678        TCGA-64-1680 
  "ADAMTS2 MUTATED" "ADAMTS2 WILD-TYPE" "ADAMTS2 WILD-TYPE" "ADAMTS2 WILD-TYPE" 
       TCGA-64-5774        TCGA-64-5775        TCGA-64-5778        TCGA-64-5779 
"ADAMTS2 WILD-TYPE" "ADAMTS2 WILD-TYPE" "ADAMTS2 WILD-TYPE" "ADAMTS2 WILD-TYPE" 
       TCGA-64-5781        TCGA-64-5815        TCGA-67-3770        TCGA-67-3771 
"ADAMTS2 WILD-TYPE" "ADAMTS2 WILD-TYPE" "ADAMTS2 WILD-TYPE" "ADAMTS2 WILD-TYPE" 
       TCGA-67-3772        TCGA-67-3773        TCGA-67-3774        TCGA-67-6215 
"ADAMTS2 WILD-TYPE" "ADAMTS2 WILD-TYPE" "ADAMTS2 WILD-TYPE" "ADAMTS2 WILD-TYPE" 
       TCGA-67-6216        TCGA-67-6217        TCGA-71-6725        TCGA-73-4658 
"ADAMTS2 WILD-TYPE" "ADAMTS2 WILD-TYPE" "ADAMTS2 WILD-TYPE" "ADAMTS2 WILD-TYPE" 
       TCGA-73-4659        TCGA-73-4662        TCGA-73-4666        TCGA-73-4668 
  "ADAMTS2 MUTATED" "ADAMTS2 WILD-TYPE" "ADAMTS2 WILD-TYPE" "ADAMTS2 WILD-TYPE" 
       TCGA-73-4670        TCGA-73-4675        TCGA-73-4676        TCGA-73-4677 
"ADAMTS2 WILD-TYPE" "ADAMTS2 WILD-TYPE" "ADAMTS2 WILD-TYPE" "ADAMTS2 WILD-TYPE" 
       TCGA-91-6828        TCGA-91-6829        TCGA-91-6831        TCGA-91-6835 
"ADAMTS2 WILD-TYPE" "ADAMTS2 WILD-TYPE"   "ADAMTS2 MUTATED" "ADAMTS2 WILD-TYPE" 
       TCGA-91-6836 
"ADAMTS2 WILD-TYPE" 
       TCGA-05-4249        TCGA-05-4250        TCGA-05-4382        TCGA-05-4384 
"ADAMTS2 WILD-TYPE" "ADAMTS2 WILD-TYPE"   "ADAMTS2 MUTATED" "ADAMTS2 WILD-TYPE" 
       TCGA-05-4390        TCGA-05-4396        TCGA-05-4397        TCGA-05-4398 
  "ADAMTS2 MUTATED" "ADAMTS2 WILD-TYPE"   "ADAMTS2 MUTATED" "ADAMTS2 WILD-TYPE" 
       TCGA-05-4402        TCGA-05-4405        TCGA-05-4415        TCGA-05-4417 
"ADAMTS2 WILD-TYPE" "ADAMTS2 WILD-TYPE" "ADAMTS2 WILD-TYPE" "ADAMTS2 WILD-TYPE" 
       TCGA-05-4418        TCGA-05-4420        TCGA-05-4424        TCGA-05-4426 
"ADAMTS2 WILD-TYPE" "ADAMTS2 WILD-TYPE" "ADAMTS2 WILD-TYPE" "ADAMTS2 WILD-TYPE" 
       TCGA-05-4427        TCGA-05-4430        TCGA-05-4432        TCGA-05-4433 
  "ADAMTS2 MUTATED" "ADAMTS2 WILD-TYPE" "ADAMTS2 WILD-TYPE" "ADAMTS2 WILD-TYPE" 
       TCGA-05-4434        TCGA-05-5420        TCGA-05-5423        TCGA-05-5425 
"ADAMTS2 WILD-TYPE" "ADAMTS2 WILD-TYPE" "ADAMTS2 WILD-TYPE" "ADAMTS2 WILD-TYPE" 
       TCGA-05-5429        TCGA-05-5715        TCGA-35-3615        TCGA-35-4122 
"ADAMTS2 WILD-TYPE" "ADAMTS2 WILD-TYPE" "ADAMTS2 WILD-TYPE" "ADAMTS2 WILD-TYPE" 
       TCGA-35-4123        TCGA-35-5375        TCGA-38-4625        TCGA-38-4626 
"ADAMTS2 WILD-TYPE" "ADAMTS2 WILD-TYPE" "ADAMTS2 WILD-TYPE" "ADAMTS2 WILD-TYPE" 
       TCGA-38-4627        TCGA-38-4628        TCGA-38-4629        TCGA-38-4630 
"ADAMTS2 WILD-TYPE" "ADAMTS2 WILD-TYPE" "ADAMTS2 WILD-TYPE" "ADAMTS2 WILD-TYPE" 
       TCGA-38-4631        TCGA-38-4632        TCGA-38-6178        TCGA-44-2655 
"ADAMTS2 WILD-TYPE" "ADAMTS2 WILD-TYPE" "ADAMTS2 WILD-TYPE" "ADAMTS2 WILD-TYPE" 
       TCGA-44-2656        TCGA-44-2657        TCGA-44-2659        TCGA-44-2661 
"ADAMTS2 WILD-TYPE" "ADAMTS2 WILD-TYPE" "ADAMTS2 WILD-TYPE" "ADAMTS2 WILD-TYPE" 
       TCGA-44-2662        TCGA-44-2665        TCGA-44-2666        TCGA-44-2668 
"ADAMTS2 WILD-TYPE" "ADAMTS2 WILD-TYPE" "ADAMTS2 WILD-TYPE" "ADAMTS2 WILD-TYPE" 
       TCGA-44-3396        TCGA-44-3398        TCGA-44-3918        TCGA-44-3919 
  "ADAMTS2 MUTATED" "ADAMTS2 WILD-TYPE" "ADAMTS2 WILD-TYPE" "ADAMTS2 WILD-TYPE" 
       TCGA-44-4112        TCGA-44-5643        TCGA-44-5645        TCGA-44-6144 
  "ADAMTS2 MUTATED" "ADAMTS2 WILD-TYPE" "ADAMTS2 WILD-TYPE" "ADAMTS2 WILD-TYPE" 
       TCGA-44-6145        TCGA-44-6146        TCGA-44-6147        TCGA-44-6148 
"ADAMTS2 WILD-TYPE" "ADAMTS2 WILD-TYPE" "ADAMTS2 WILD-TYPE" "ADAMTS2 WILD-TYPE" 
       TCGA-44-6774        TCGA-44-6775        TCGA-44-6776        TCGA-44-6777 
"ADAMTS2 WILD-TYPE" "ADAMTS2 WILD-TYPE" "ADAMTS2 WILD-TYPE"   "ADAMTS2 MUTATED" 
       TCGA-44-6778        TCGA-44-6779        TCGA-49-4486        TCGA-49-4487 
"ADAMTS2 WILD-TYPE" "ADAMTS2 WILD-TYPE" "ADAMTS2 WILD-TYPE" "ADAMTS2 WILD-TYPE" 
       TCGA-49-4488        TCGA-49-4490        TCGA-49-4494        TCGA-49-4501 
"ADAMTS2 WILD-TYPE" "ADAMTS2 WILD-TYPE" "ADAMTS2 WILD-TYPE" "ADAMTS2 WILD-TYPE" 
       TCGA-49-4505        TCGA-49-4506        TCGA-49-4507        TCGA-49-4510 
"ADAMTS2 WILD-TYPE" "ADAMTS2 WILD-TYPE" "ADAMTS2 WILD-TYPE" "ADAMTS2 WILD-TYPE" 
       TCGA-49-4512        TCGA-49-4514        TCGA-49-6742        TCGA-49-6743 
"ADAMTS2 WILD-TYPE" "ADAMTS2 WILD-TYPE" "ADAMTS2 WILD-TYPE" "ADAMTS2 WILD-TYPE" 
       TCGA-49-6744        TCGA-49-6745        TCGA-50-5044        TCGA-50-5045 
"ADAMTS2 WILD-TYPE" "ADAMTS2 WILD-TYPE" "ADAMTS2 WILD-TYPE" "ADAMTS2 WILD-TYPE" 
       TCGA-50-5049        TCGA-50-5051        TCGA-50-5055        TCGA-50-5066 
"ADAMTS2 WILD-TYPE" "ADAMTS2 WILD-TYPE" "ADAMTS2 WILD-TYPE" "ADAMTS2 WILD-TYPE" 
       TCGA-50-5068        TCGA-50-5072        TCGA-50-5930        TCGA-50-5931 
"ADAMTS2 WILD-TYPE" "ADAMTS2 WILD-TYPE" "ADAMTS2 WILD-TYPE" "ADAMTS2 WILD-TYPE" 
       TCGA-50-5932        TCGA-50-5933        TCGA-50-5935        TCGA-50-5936 
"ADAMTS2 WILD-TYPE" "ADAMTS2 WILD-TYPE" "ADAMTS2 WILD-TYPE" "ADAMTS2 WILD-TYPE" 
       TCGA-50-5939        TCGA-50-5941        TCGA-50-5942        TCGA-50-5944 
"ADAMTS2 WILD-TYPE" "ADAMTS2 WILD-TYPE" "ADAMTS2 WILD-TYPE" "ADAMTS2 WILD-TYPE" 
       TCGA-50-5946        TCGA-50-6590        TCGA-50-6591        TCGA-50-6592 
"ADAMTS2 WILD-TYPE" "ADAMTS2 WILD-TYPE" "ADAMTS2 WILD-TYPE" "ADAMTS2 WILD-TYPE" 
       TCGA-50-6593        TCGA-50-6594        TCGA-50-6595        TCGA-50-6597 
  "ADAMTS2 MUTATED" "ADAMTS2 WILD-TYPE" "ADAMTS2 WILD-TYPE" "ADAMTS2 WILD-TYPE" 
       TCGA-55-1592        TCGA-55-1594        TCGA-55-1595        TCGA-55-1596 
"ADAMTS2 WILD-TYPE" "ADAMTS2 WILD-TYPE" "ADAMTS2 WILD-TYPE" "ADAMTS2 WILD-TYPE" 
       TCGA-55-5899        TCGA-55-6543        TCGA-55-6642        TCGA-55-6712 
"ADAMTS2 WILD-TYPE" "ADAMTS2 WILD-TYPE"   "ADAMTS2 MUTATED" "ADAMTS2 WILD-TYPE" 
       TCGA-64-1676        TCGA-64-1677        TCGA-64-1678        TCGA-64-1680 
  "ADAMTS2 MUTATED" "ADAMTS2 WILD-TYPE" "ADAMTS2 WILD-TYPE" "ADAMTS2 WILD-TYPE" 
       TCGA-64-5774        TCGA-64-5775        TCGA-64-5778        TCGA-64-5779 
"ADAMTS2 WILD-TYPE" "ADAMTS2 WILD-TYPE" "ADAMTS2 WILD-TYPE" "ADAMTS2 WILD-TYPE" 
       TCGA-64-5781        TCGA-64-5815        TCGA-67-3770        TCGA-67-3771 
"ADAMTS2 WILD-TYPE" "ADAMTS2 WILD-TYPE" "ADAMTS2 WILD-TYPE" "ADAMTS2 WILD-TYPE" 
       TCGA-67-3772        TCGA-67-3773        TCGA-67-3774        TCGA-67-6215 
"ADAMTS2 WILD-TYPE" "ADAMTS2 WILD-TYPE" "ADAMTS2 WILD-TYPE" "ADAMTS2 WILD-TYPE" 
       TCGA-67-6216        TCGA-67-6217        TCGA-71-6725        TCGA-73-4658 
"ADAMTS2 WILD-TYPE" "ADAMTS2 WILD-TYPE" "ADAMTS2 WILD-TYPE" "ADAMTS2 WILD-TYPE" 
       TCGA-73-4659        TCGA-73-4662        TCGA-73-4666        TCGA-73-4668 
  "ADAMTS2 MUTATED" "ADAMTS2 WILD-TYPE" "ADAMTS2 WILD-TYPE" "ADAMTS2 WILD-TYPE" 
       TCGA-73-4670        TCGA-73-4675        TCGA-73-4676        TCGA-73-4677 
"ADAMTS2 WILD-TYPE" "ADAMTS2 WILD-TYPE" "ADAMTS2 WILD-TYPE" "ADAMTS2 WILD-TYPE" 
       TCGA-91-6828        TCGA-91-6829        TCGA-91-6831        TCGA-91-6835 
"ADAMTS2 WILD-TYPE" "ADAMTS2 WILD-TYPE"   "ADAMTS2 MUTATED" "ADAMTS2 WILD-TYPE" 
       TCGA-91-6836 
"ADAMTS2 WILD-TYPE" 
       TCGA-05-4249        TCGA-05-4250        TCGA-05-4382        TCGA-05-4384 
"ADAMTS2 WILD-TYPE" "ADAMTS2 WILD-TYPE"   "ADAMTS2 MUTATED" "ADAMTS2 WILD-TYPE" 
       TCGA-05-4390        TCGA-05-4396        TCGA-05-4397        TCGA-05-4398 
  "ADAMTS2 MUTATED" "ADAMTS2 WILD-TYPE"   "ADAMTS2 MUTATED" "ADAMTS2 WILD-TYPE" 
       TCGA-05-4402        TCGA-05-4405        TCGA-05-4415        TCGA-05-4417 
"ADAMTS2 WILD-TYPE" "ADAMTS2 WILD-TYPE" "ADAMTS2 WILD-TYPE" "ADAMTS2 WILD-TYPE" 
       TCGA-05-4418        TCGA-05-4420        TCGA-05-4424        TCGA-05-4426 
"ADAMTS2 WILD-TYPE" "ADAMTS2 WILD-TYPE" "ADAMTS2 WILD-TYPE" "ADAMTS2 WILD-TYPE" 
       TCGA-05-4427        TCGA-05-4430        TCGA-05-4432        TCGA-05-4433 
  "ADAMTS2 MUTATED" "ADAMTS2 WILD-TYPE" "ADAMTS2 WILD-TYPE" "ADAMTS2 WILD-TYPE" 
       TCGA-05-4434        TCGA-05-5420        TCGA-05-5423        TCGA-05-5425 
"ADAMTS2 WILD-TYPE" "ADAMTS2 WILD-TYPE" "ADAMTS2 WILD-TYPE" "ADAMTS2 WILD-TYPE" 
       TCGA-05-5429        TCGA-05-5715        TCGA-35-3615        TCGA-35-4122 
"ADAMTS2 WILD-TYPE" "ADAMTS2 WILD-TYPE" "ADAMTS2 WILD-TYPE" "ADAMTS2 WILD-TYPE" 
       TCGA-35-4123        TCGA-35-5375        TCGA-38-4625        TCGA-38-4626 
"ADAMTS2 WILD-TYPE" "ADAMTS2 WILD-TYPE" "ADAMTS2 WILD-TYPE" "ADAMTS2 WILD-TYPE" 
       TCGA-38-4627        TCGA-38-4628        TCGA-38-4629        TCGA-38-4630 
"ADAMTS2 WILD-TYPE" "ADAMTS2 WILD-TYPE" "ADAMTS2 WILD-TYPE" "ADAMTS2 WILD-TYPE" 
       TCGA-38-4631        TCGA-38-4632        TCGA-38-6178        TCGA-44-2655 
"ADAMTS2 WILD-TYPE" "ADAMTS2 WILD-TYPE" "ADAMTS2 WILD-TYPE" "ADAMTS2 WILD-TYPE" 
       TCGA-44-2656        TCGA-44-2657        TCGA-44-2659        TCGA-44-2661 
"ADAMTS2 WILD-TYPE" "ADAMTS2 WILD-TYPE" "ADAMTS2 WILD-TYPE" "ADAMTS2 WILD-TYPE" 
       TCGA-44-2662        TCGA-44-2665        TCGA-44-2666        TCGA-44-2668 
"ADAMTS2 WILD-TYPE" "ADAMTS2 WILD-TYPE" "ADAMTS2 WILD-TYPE" "ADAMTS2 WILD-TYPE" 
       TCGA-44-3396        TCGA-44-3398        TCGA-44-3918        TCGA-44-3919 
  "ADAMTS2 MUTATED" "ADAMTS2 WILD-TYPE" "ADAMTS2 WILD-TYPE" "ADAMTS2 WILD-TYPE" 
       TCGA-44-4112        TCGA-44-5643        TCGA-44-5645        TCGA-44-6144 
  "ADAMTS2 MUTATED" "ADAMTS2 WILD-TYPE" "ADAMTS2 WILD-TYPE" "ADAMTS2 WILD-TYPE" 
       TCGA-44-6145        TCGA-44-6146        TCGA-44-6147        TCGA-44-6148 
"ADAMTS2 WILD-TYPE" "ADAMTS2 WILD-TYPE" "ADAMTS2 WILD-TYPE" "ADAMTS2 WILD-TYPE" 
       TCGA-44-6774        TCGA-44-6775        TCGA-44-6776        TCGA-44-6777 
"ADAMTS2 WILD-TYPE" "ADAMTS2 WILD-TYPE" "ADAMTS2 WILD-TYPE"   "ADAMTS2 MUTATED" 
       TCGA-44-6778        TCGA-44-6779        TCGA-49-4486        TCGA-49-4487 
"ADAMTS2 WILD-TYPE" "ADAMTS2 WILD-TYPE" "ADAMTS2 WILD-TYPE" "ADAMTS2 WILD-TYPE" 
       TCGA-49-4488        TCGA-49-4490        TCGA-49-4494        TCGA-49-4501 
"ADAMTS2 WILD-TYPE" "ADAMTS2 WILD-TYPE" "ADAMTS2 WILD-TYPE" "ADAMTS2 WILD-TYPE" 
       TCGA-49-4505        TCGA-49-4506        TCGA-49-4507        TCGA-49-4510 
"ADAMTS2 WILD-TYPE" "ADAMTS2 WILD-TYPE" "ADAMTS2 WILD-TYPE" "ADAMTS2 WILD-TYPE" 
       TCGA-49-4512        TCGA-49-4514        TCGA-49-6742        TCGA-49-6743 
"ADAMTS2 WILD-TYPE" "ADAMTS2 WILD-TYPE" "ADAMTS2 WILD-TYPE" "ADAMTS2 WILD-TYPE" 
       TCGA-49-6744        TCGA-49-6745        TCGA-50-5044        TCGA-50-5045 
"ADAMTS2 WILD-TYPE" "ADAMTS2 WILD-TYPE" "ADAMTS2 WILD-TYPE" "ADAMTS2 WILD-TYPE" 
       TCGA-50-5049        TCGA-50-5051        TCGA-50-5055        TCGA-50-5066 
"ADAMTS2 WILD-TYPE" "ADAMTS2 WILD-TYPE" "ADAMTS2 WILD-TYPE" "ADAMTS2 WILD-TYPE" 
       TCGA-50-5068        TCGA-50-5072        TCGA-50-5930        TCGA-50-5931 
"ADAMTS2 WILD-TYPE" "ADAMTS2 WILD-TYPE" "ADAMTS2 WILD-TYPE" "ADAMTS2 WILD-TYPE" 
       TCGA-50-5932        TCGA-50-5933        TCGA-50-5935        TCGA-50-5936 
"ADAMTS2 WILD-TYPE" "ADAMTS2 WILD-TYPE" "ADAMTS2 WILD-TYPE" "ADAMTS2 WILD-TYPE" 
       TCGA-50-5939        TCGA-50-5941        TCGA-50-5942        TCGA-50-5944 
"ADAMTS2 WILD-TYPE" "ADAMTS2 WILD-TYPE" "ADAMTS2 WILD-TYPE" "ADAMTS2 WILD-TYPE" 
       TCGA-50-5946        TCGA-50-6590        TCGA-50-6591        TCGA-50-6592 
"ADAMTS2 WILD-TYPE" "ADAMTS2 WILD-TYPE" "ADAMTS2 WILD-TYPE" "ADAMTS2 WILD-TYPE" 
       TCGA-50-6593        TCGA-50-6594        TCGA-50-6595        TCGA-50-6597 
  "ADAMTS2 MUTATED" "ADAMTS2 WILD-TYPE" "ADAMTS2 WILD-TYPE" "ADAMTS2 WILD-TYPE" 
       TCGA-55-1592        TCGA-55-1594        TCGA-55-1595        TCGA-55-1596 
"ADAMTS2 WILD-TYPE" "ADAMTS2 WILD-TYPE" "ADAMTS2 WILD-TYPE" "ADAMTS2 WILD-TYPE" 
       TCGA-55-5899        TCGA-55-6543        TCGA-55-6642        TCGA-55-6712 
"ADAMTS2 WILD-TYPE" "ADAMTS2 WILD-TYPE"   "ADAMTS2 MUTATED" "ADAMTS2 WILD-TYPE" 
       TCGA-64-1676        TCGA-64-1677        TCGA-64-1678        TCGA-64-1680 
  "ADAMTS2 MUTATED" "ADAMTS2 WILD-TYPE" "ADAMTS2 WILD-TYPE" "ADAMTS2 WILD-TYPE" 
       TCGA-64-5774        TCGA-64-5775        TCGA-64-5778        TCGA-64-5779 
"ADAMTS2 WILD-TYPE" "ADAMTS2 WILD-TYPE" "ADAMTS2 WILD-TYPE" "ADAMTS2 WILD-TYPE" 
       TCGA-64-5781        TCGA-64-5815        TCGA-67-3770        TCGA-67-3771 
"ADAMTS2 WILD-TYPE" "ADAMTS2 WILD-TYPE" "ADAMTS2 WILD-TYPE" "ADAMTS2 WILD-TYPE" 
       TCGA-67-3772        TCGA-67-3773        TCGA-67-3774        TCGA-67-6215 
"ADAMTS2 WILD-TYPE" "ADAMTS2 WILD-TYPE" "ADAMTS2 WILD-TYPE" "ADAMTS2 WILD-TYPE" 
       TCGA-67-6216        TCGA-67-6217        TCGA-71-6725        TCGA-73-4658 
"ADAMTS2 WILD-TYPE" "ADAMTS2 WILD-TYPE" "ADAMTS2 WILD-TYPE" "ADAMTS2 WILD-TYPE" 
       TCGA-73-4659        TCGA-73-4662        TCGA-73-4666        TCGA-73-4668 
  "ADAMTS2 MUTATED" "ADAMTS2 WILD-TYPE" "ADAMTS2 WILD-TYPE" "ADAMTS2 WILD-TYPE" 
       TCGA-73-4670        TCGA-73-4675        TCGA-73-4676        TCGA-73-4677 
"ADAMTS2 WILD-TYPE" "ADAMTS2 WILD-TYPE" "ADAMTS2 WILD-TYPE" "ADAMTS2 WILD-TYPE" 
       TCGA-91-6828        TCGA-91-6829        TCGA-91-6831        TCGA-91-6835 
"ADAMTS2 WILD-TYPE" "ADAMTS2 WILD-TYPE"   "ADAMTS2 MUTATED" "ADAMTS2 WILD-TYPE" 
       TCGA-91-6836 
"ADAMTS2 WILD-TYPE" 
[1] "hr=" "1.2"
D81V2, continuous
D81V3, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  ADAMTS2 MUTATED      6    8
  ADAMTS2 WILD-TYPE   87   71
        clus
vv       ADAMTS2 MUTATED ADAMTS2 WILD-TYPE
  FEMALE               6                87
  MALE                 8                71
D81V4, continuous
[1] "Remove cluster labels:" "ADAMTS2 MUTATED"       
clus
  ADAMTS2 MUTATED ADAMTS2 WILD-TYPE 
                1                11 
       TCGA-35-4122        TCGA-35-4123        TCGA-35-5375        TCGA-64-1677 
"ADAMTS2 WILD-TYPE" "ADAMTS2 WILD-TYPE" "ADAMTS2 WILD-TYPE" "ADAMTS2 WILD-TYPE" 
       TCGA-64-5778        TCGA-71-6725        TCGA-73-4662        TCGA-73-4666 
"ADAMTS2 WILD-TYPE" "ADAMTS2 WILD-TYPE" "ADAMTS2 WILD-TYPE" "ADAMTS2 WILD-TYPE" 
       TCGA-73-4668        TCGA-73-4676        TCGA-75-5122 
"ADAMTS2 WILD-TYPE" "ADAMTS2 WILD-TYPE" "ADAMTS2 WILD-TYPE" 
D81V5, multiclass
D81V6, multiclass
    clus
vv   ADAMTS2 MUTATED ADAMTS2 WILD-TYPE
  T1               2                39
  T2              11                97
  T3               0                14
  T4               1                 7
D81V7, multiclass
       clus
vv      ADAMTS2 MUTATED ADAMTS2 WILD-TYPE
  N0                  7                88
  N1                  2                35
  N2+N3               4                31
D81V8, multiclass
    clus
vv   ADAMTS2 MUTATED ADAMTS2 WILD-TYPE
  M0              11               126
  M1               0                 9
  MX               3                19
D81V9, multiclass
     clus
vv    ADAMTS2 MUTATED ADAMTS2 WILD-TYPE
  I                 8                80
  II                2                31
  III               4                35
  IV                0                 9
D81V10, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  ADAMTS2 MUTATED      1   13
  ADAMTS2 WILD-TYPE   15  143
     clus
vv    ADAMTS2 MUTATED ADAMTS2 WILD-TYPE
  NO                1                15
  YES              13               143
D81V11, continuous
D81V12, continuous
D81V13, multiclass
                                             clus
vv                                            ADAMTS2 MUTATED ADAMTS2 WILD-TYPE
  CURRENT REFORMED SMOKER FOR < OR = 15 YEARS               5                57
  CURRENT REFORMED SMOKER FOR > 15 YEARS                    3                43
  CURRENT SMOKER                                            5                23
  LIFELONG NON-SMOKER                                       1                23
D81V14, continuous

Clustering(82) Variable = OR14A16 MUTATION ANALYSIS
D82V1, survival
                   sevent
clus2                0  1
  OR14A16 MUTATED    8  3
  OR14A16 WILD-TYPE 91 47
  OR14A16 MUTATED OR14A16 WILD-TYPE 
               11               138 
  OR14A16 MUTATED OR14A16 WILD-TYPE 
                3                47 
$`OR14A16 MUTATED`
TCGA-05-4384 TCGA-38-4632 TCGA-44-2656 TCGA-44-2665 TCGA-44-3918 TCGA-49-6744 
       14.01        44.61        19.10        13.15         6.44        12.99 
TCGA-50-5933 TCGA-50-6590 TCGA-64-5815 TCGA-67-3770 TCGA-91-6836 
       77.88        42.31         7.33         0.99         0.36 

$`OR14A16 WILD-TYPE`
TCGA-05-4249 TCGA-05-4250 TCGA-05-4382 TCGA-05-4390 TCGA-05-4396 TCGA-05-4397 
       38.07         3.98        19.92        37.02         9.96        24.03 
TCGA-05-4398 TCGA-05-4402 TCGA-05-4405 TCGA-05-4415 TCGA-05-4417 TCGA-05-4418 
       47.05         8.02        20.05         2.96        14.93         8.98 
TCGA-05-4420 TCGA-05-4424 TCGA-05-4426 TCGA-05-4427 TCGA-05-4430 TCGA-05-4432 
       29.95        30.02        26.01        26.01        25.02        25.02 
TCGA-05-4433 TCGA-05-4434 TCGA-05-5420 TCGA-05-5423 TCGA-05-5425 TCGA-05-5429 
       24.00        15.02         1.02         4.96         2.96         0.99 
TCGA-05-5715 TCGA-35-3615 TCGA-35-4122 TCGA-35-4123 TCGA-35-5375 TCGA-38-4625 
        2.04         0.46         7.36         5.95         8.68        47.61 
TCGA-38-4626 TCGA-38-4627 TCGA-38-4628 TCGA-38-4629 TCGA-38-4630 TCGA-38-4631 
       85.32        37.71        49.02        28.37        35.28        11.64 
TCGA-38-6178 TCGA-44-2655 TCGA-44-2657 TCGA-44-2659 TCGA-44-2661 TCGA-44-2662 
        5.19        18.87        13.15        17.39         3.39        15.78 
TCGA-44-2666 TCGA-44-2668 TCGA-44-3396 TCGA-44-3398 TCGA-44-3919 TCGA-44-4112 
        3.19         8.09        10.22         8.32         6.21         4.60 
TCGA-44-5643 TCGA-44-5645 TCGA-44-6144 TCGA-44-6145 TCGA-44-6146 TCGA-44-6147 
        3.48         6.84         0.30         3.35         9.93         7.76 
TCGA-44-6148 TCGA-44-6774 TCGA-44-6775 TCGA-44-6776 TCGA-44-6777 TCGA-44-6778 
        3.12         5.42         2.70        63.72        32.45        36.49 
TCGA-44-6779 TCGA-49-4486 TCGA-49-4487 TCGA-49-4488 TCGA-49-4490 TCGA-49-4494 
       16.41        76.21        28.11        28.57        12.66        35.54 
TCGA-49-4501 TCGA-49-4505 TCGA-49-4506 TCGA-49-4507 TCGA-49-4510 TCGA-49-4512 
       46.72        14.07        32.84         8.81        29.46        29.75 
TCGA-49-4514 TCGA-49-6742 TCGA-49-6743 TCGA-49-6745 TCGA-50-5044 TCGA-50-5045 
       43.20        15.02        12.13         4.93        20.48        71.47 
TCGA-50-5049 TCGA-50-5051 TCGA-50-5055 TCGA-50-5066 TCGA-50-5068 TCGA-50-5072 
       48.82        14.96        25.81         9.76        49.28         8.05 
TCGA-50-5930 TCGA-50-5931 TCGA-50-5932 TCGA-50-5935 TCGA-50-5936 TCGA-50-5939 
        9.27         8.78        35.87        21.47         8.45        15.12 
TCGA-50-5941 TCGA-50-5942 TCGA-50-5944 TCGA-50-5946 TCGA-50-6591 TCGA-50-6592 
        9.37         4.44        12.26        11.47         3.88        25.51 
TCGA-50-6593 TCGA-50-6594 TCGA-50-6595 TCGA-50-6597 TCGA-55-1592 TCGA-55-1594 
       11.05        12.16         6.21        33.37        23.05        38.73 
TCGA-55-1595 TCGA-55-1596 TCGA-55-5899 TCGA-55-6543 TCGA-55-6642 TCGA-55-6712 
       48.62        45.17         2.86         0.07        32.61         0.79 
TCGA-64-1676 TCGA-64-1677 TCGA-64-1678 TCGA-64-1680 TCGA-64-5774 TCGA-64-5775 
       56.81        20.65        39.09        37.02        83.84         0.10 
TCGA-64-5778 TCGA-64-5779 TCGA-64-5781 TCGA-67-3771 TCGA-67-3772 TCGA-67-3773 
       30.44        16.67        39.52         1.97         0.59         2.04 
TCGA-67-3774 TCGA-67-6215 TCGA-67-6216 TCGA-67-6217 TCGA-71-6725 TCGA-73-4658 
        0.59         0.89         0.69        13.87         2.01        52.57 
TCGA-73-4659 TCGA-73-4662 TCGA-73-4666 TCGA-73-4668 TCGA-73-4670 TCGA-73-4675 
       23.38        29.95        20.28        15.35         0.46         1.32 
TCGA-73-4676 TCGA-73-4677 TCGA-91-6828 TCGA-91-6829 TCGA-91-6831 TCGA-91-6835 
        4.01         1.25         1.22        41.33         1.28         1.15 

  OR14A16 MUTATED OR14A16 WILD-TYPE 
             0.36              0.07 
  OR14A16 MUTATED OR14A16 WILD-TYPE 
            77.88             85.32 
  OR14A16 MUTATED OR14A16 WILD-TYPE 
            13.15             13.97 
[1] "0.4 - 77.9 (13.2)" "0.1 - 85.3 (14.0)"
       TCGA-05-4249        TCGA-05-4250        TCGA-05-4382        TCGA-05-4384 
"OR14A16 WILD-TYPE" "OR14A16 WILD-TYPE" "OR14A16 WILD-TYPE"   "OR14A16 MUTATED" 
       TCGA-05-4390        TCGA-05-4396        TCGA-05-4397        TCGA-05-4398 
"OR14A16 WILD-TYPE" "OR14A16 WILD-TYPE" "OR14A16 WILD-TYPE" "OR14A16 WILD-TYPE" 
       TCGA-05-4402        TCGA-05-4405        TCGA-05-4415        TCGA-05-4417 
"OR14A16 WILD-TYPE" "OR14A16 WILD-TYPE" "OR14A16 WILD-TYPE" "OR14A16 WILD-TYPE" 
       TCGA-05-4418        TCGA-05-4420        TCGA-05-4424        TCGA-05-4426 
"OR14A16 WILD-TYPE" "OR14A16 WILD-TYPE" "OR14A16 WILD-TYPE" "OR14A16 WILD-TYPE" 
       TCGA-05-4427        TCGA-05-4430        TCGA-05-4432        TCGA-05-4433 
"OR14A16 WILD-TYPE" "OR14A16 WILD-TYPE" "OR14A16 WILD-TYPE" "OR14A16 WILD-TYPE" 
       TCGA-05-4434        TCGA-05-5420        TCGA-05-5423        TCGA-05-5425 
"OR14A16 WILD-TYPE" "OR14A16 WILD-TYPE" "OR14A16 WILD-TYPE" "OR14A16 WILD-TYPE" 
       TCGA-05-5429        TCGA-05-5715        TCGA-35-3615        TCGA-35-4122 
"OR14A16 WILD-TYPE" "OR14A16 WILD-TYPE" "OR14A16 WILD-TYPE" "OR14A16 WILD-TYPE" 
       TCGA-35-4123        TCGA-35-5375        TCGA-38-4625        TCGA-38-4626 
"OR14A16 WILD-TYPE" "OR14A16 WILD-TYPE" "OR14A16 WILD-TYPE" "OR14A16 WILD-TYPE" 
       TCGA-38-4627        TCGA-38-4628        TCGA-38-4629        TCGA-38-4630 
"OR14A16 WILD-TYPE" "OR14A16 WILD-TYPE" "OR14A16 WILD-TYPE" "OR14A16 WILD-TYPE" 
       TCGA-38-4631        TCGA-38-4632        TCGA-38-6178        TCGA-44-2655 
"OR14A16 WILD-TYPE"   "OR14A16 MUTATED" "OR14A16 WILD-TYPE" "OR14A16 WILD-TYPE" 
       TCGA-44-2656        TCGA-44-2657        TCGA-44-2659        TCGA-44-2661 
  "OR14A16 MUTATED" "OR14A16 WILD-TYPE" "OR14A16 WILD-TYPE" "OR14A16 WILD-TYPE" 
       TCGA-44-2662        TCGA-44-2665        TCGA-44-2666        TCGA-44-2668 
"OR14A16 WILD-TYPE"   "OR14A16 MUTATED" "OR14A16 WILD-TYPE" "OR14A16 WILD-TYPE" 
       TCGA-44-3396        TCGA-44-3398        TCGA-44-3918        TCGA-44-3919 
"OR14A16 WILD-TYPE" "OR14A16 WILD-TYPE"   "OR14A16 MUTATED" "OR14A16 WILD-TYPE" 
       TCGA-44-4112        TCGA-44-5643        TCGA-44-5645        TCGA-44-6144 
"OR14A16 WILD-TYPE" "OR14A16 WILD-TYPE" "OR14A16 WILD-TYPE" "OR14A16 WILD-TYPE" 
       TCGA-44-6145        TCGA-44-6146        TCGA-44-6147        TCGA-44-6148 
"OR14A16 WILD-TYPE" "OR14A16 WILD-TYPE" "OR14A16 WILD-TYPE" "OR14A16 WILD-TYPE" 
       TCGA-44-6774        TCGA-44-6775        TCGA-44-6776        TCGA-44-6777 
"OR14A16 WILD-TYPE" "OR14A16 WILD-TYPE" "OR14A16 WILD-TYPE" "OR14A16 WILD-TYPE" 
       TCGA-44-6778        TCGA-44-6779        TCGA-49-4486        TCGA-49-4487 
"OR14A16 WILD-TYPE" "OR14A16 WILD-TYPE" "OR14A16 WILD-TYPE" "OR14A16 WILD-TYPE" 
       TCGA-49-4488        TCGA-49-4490        TCGA-49-4494        TCGA-49-4501 
"OR14A16 WILD-TYPE" "OR14A16 WILD-TYPE" "OR14A16 WILD-TYPE" "OR14A16 WILD-TYPE" 
       TCGA-49-4505        TCGA-49-4506        TCGA-49-4507        TCGA-49-4510 
"OR14A16 WILD-TYPE" "OR14A16 WILD-TYPE" "OR14A16 WILD-TYPE" "OR14A16 WILD-TYPE" 
       TCGA-49-4512        TCGA-49-4514        TCGA-49-6742        TCGA-49-6743 
"OR14A16 WILD-TYPE" "OR14A16 WILD-TYPE" "OR14A16 WILD-TYPE" "OR14A16 WILD-TYPE" 
       TCGA-49-6744        TCGA-49-6745        TCGA-50-5044        TCGA-50-5045 
  "OR14A16 MUTATED" "OR14A16 WILD-TYPE" "OR14A16 WILD-TYPE" "OR14A16 WILD-TYPE" 
       TCGA-50-5049        TCGA-50-5051        TCGA-50-5055        TCGA-50-5066 
"OR14A16 WILD-TYPE" "OR14A16 WILD-TYPE" "OR14A16 WILD-TYPE" "OR14A16 WILD-TYPE" 
       TCGA-50-5068        TCGA-50-5072        TCGA-50-5930        TCGA-50-5931 
"OR14A16 WILD-TYPE" "OR14A16 WILD-TYPE" "OR14A16 WILD-TYPE" "OR14A16 WILD-TYPE" 
       TCGA-50-5932        TCGA-50-5933        TCGA-50-5935        TCGA-50-5936 
"OR14A16 WILD-TYPE"   "OR14A16 MUTATED" "OR14A16 WILD-TYPE" "OR14A16 WILD-TYPE" 
       TCGA-50-5939        TCGA-50-5941        TCGA-50-5942        TCGA-50-5944 
"OR14A16 WILD-TYPE" "OR14A16 WILD-TYPE" "OR14A16 WILD-TYPE" "OR14A16 WILD-TYPE" 
       TCGA-50-5946        TCGA-50-6590        TCGA-50-6591        TCGA-50-6592 
"OR14A16 WILD-TYPE"   "OR14A16 MUTATED" "OR14A16 WILD-TYPE" "OR14A16 WILD-TYPE" 
       TCGA-50-6593        TCGA-50-6594        TCGA-50-6595        TCGA-50-6597 
"OR14A16 WILD-TYPE" "OR14A16 WILD-TYPE" "OR14A16 WILD-TYPE" "OR14A16 WILD-TYPE" 
       TCGA-55-1592        TCGA-55-1594        TCGA-55-1595        TCGA-55-1596 
"OR14A16 WILD-TYPE" "OR14A16 WILD-TYPE" "OR14A16 WILD-TYPE" "OR14A16 WILD-TYPE" 
       TCGA-55-5899        TCGA-55-6543        TCGA-55-6642        TCGA-55-6712 
"OR14A16 WILD-TYPE" "OR14A16 WILD-TYPE" "OR14A16 WILD-TYPE" "OR14A16 WILD-TYPE" 
       TCGA-64-1676        TCGA-64-1677        TCGA-64-1678        TCGA-64-1680 
"OR14A16 WILD-TYPE" "OR14A16 WILD-TYPE" "OR14A16 WILD-TYPE" "OR14A16 WILD-TYPE" 
       TCGA-64-5774        TCGA-64-5775        TCGA-64-5778        TCGA-64-5779 
"OR14A16 WILD-TYPE" "OR14A16 WILD-TYPE" "OR14A16 WILD-TYPE" "OR14A16 WILD-TYPE" 
       TCGA-64-5781        TCGA-64-5815        TCGA-67-3770        TCGA-67-3771 
"OR14A16 WILD-TYPE"   "OR14A16 MUTATED"   "OR14A16 MUTATED" "OR14A16 WILD-TYPE" 
       TCGA-67-3772        TCGA-67-3773        TCGA-67-3774        TCGA-67-6215 
"OR14A16 WILD-TYPE" "OR14A16 WILD-TYPE" "OR14A16 WILD-TYPE" "OR14A16 WILD-TYPE" 
       TCGA-67-6216        TCGA-67-6217        TCGA-71-6725        TCGA-73-4658 
"OR14A16 WILD-TYPE" "OR14A16 WILD-TYPE" "OR14A16 WILD-TYPE" "OR14A16 WILD-TYPE" 
       TCGA-73-4659        TCGA-73-4662        TCGA-73-4666        TCGA-73-4668 
"OR14A16 WILD-TYPE" "OR14A16 WILD-TYPE" "OR14A16 WILD-TYPE" "OR14A16 WILD-TYPE" 
       TCGA-73-4670        TCGA-73-4675        TCGA-73-4676        TCGA-73-4677 
"OR14A16 WILD-TYPE" "OR14A16 WILD-TYPE" "OR14A16 WILD-TYPE" "OR14A16 WILD-TYPE" 
       TCGA-91-6828        TCGA-91-6829        TCGA-91-6831        TCGA-91-6835 
"OR14A16 WILD-TYPE" "OR14A16 WILD-TYPE" "OR14A16 WILD-TYPE" "OR14A16 WILD-TYPE" 
       TCGA-91-6836 
  "OR14A16 MUTATED" 
       TCGA-05-4249        TCGA-05-4250        TCGA-05-4382        TCGA-05-4384 
"OR14A16 WILD-TYPE" "OR14A16 WILD-TYPE" "OR14A16 WILD-TYPE"   "OR14A16 MUTATED" 
       TCGA-05-4390        TCGA-05-4396        TCGA-05-4397        TCGA-05-4398 
"OR14A16 WILD-TYPE" "OR14A16 WILD-TYPE" "OR14A16 WILD-TYPE" "OR14A16 WILD-TYPE" 
       TCGA-05-4402        TCGA-05-4405        TCGA-05-4415        TCGA-05-4417 
"OR14A16 WILD-TYPE" "OR14A16 WILD-TYPE" "OR14A16 WILD-TYPE" "OR14A16 WILD-TYPE" 
       TCGA-05-4418        TCGA-05-4420        TCGA-05-4424        TCGA-05-4426 
"OR14A16 WILD-TYPE" "OR14A16 WILD-TYPE" "OR14A16 WILD-TYPE" "OR14A16 WILD-TYPE" 
       TCGA-05-4427        TCGA-05-4430        TCGA-05-4432        TCGA-05-4433 
"OR14A16 WILD-TYPE" "OR14A16 WILD-TYPE" "OR14A16 WILD-TYPE" "OR14A16 WILD-TYPE" 
       TCGA-05-4434        TCGA-05-5420        TCGA-05-5423        TCGA-05-5425 
"OR14A16 WILD-TYPE" "OR14A16 WILD-TYPE" "OR14A16 WILD-TYPE" "OR14A16 WILD-TYPE" 
       TCGA-05-5429        TCGA-05-5715        TCGA-35-3615        TCGA-35-4122 
"OR14A16 WILD-TYPE" "OR14A16 WILD-TYPE" "OR14A16 WILD-TYPE" "OR14A16 WILD-TYPE" 
       TCGA-35-4123        TCGA-35-5375        TCGA-38-4625        TCGA-38-4626 
"OR14A16 WILD-TYPE" "OR14A16 WILD-TYPE" "OR14A16 WILD-TYPE" "OR14A16 WILD-TYPE" 
       TCGA-38-4627        TCGA-38-4628        TCGA-38-4629        TCGA-38-4630 
"OR14A16 WILD-TYPE" "OR14A16 WILD-TYPE" "OR14A16 WILD-TYPE" "OR14A16 WILD-TYPE" 
       TCGA-38-4631        TCGA-38-4632        TCGA-38-6178        TCGA-44-2655 
"OR14A16 WILD-TYPE"   "OR14A16 MUTATED" "OR14A16 WILD-TYPE" "OR14A16 WILD-TYPE" 
       TCGA-44-2656        TCGA-44-2657        TCGA-44-2659        TCGA-44-2661 
  "OR14A16 MUTATED" "OR14A16 WILD-TYPE" "OR14A16 WILD-TYPE" "OR14A16 WILD-TYPE" 
       TCGA-44-2662        TCGA-44-2665        TCGA-44-2666        TCGA-44-2668 
"OR14A16 WILD-TYPE"   "OR14A16 MUTATED" "OR14A16 WILD-TYPE" "OR14A16 WILD-TYPE" 
       TCGA-44-3396        TCGA-44-3398        TCGA-44-3918        TCGA-44-3919 
"OR14A16 WILD-TYPE" "OR14A16 WILD-TYPE"   "OR14A16 MUTATED" "OR14A16 WILD-TYPE" 
       TCGA-44-4112        TCGA-44-5643        TCGA-44-5645        TCGA-44-6144 
"OR14A16 WILD-TYPE" "OR14A16 WILD-TYPE" "OR14A16 WILD-TYPE" "OR14A16 WILD-TYPE" 
       TCGA-44-6145        TCGA-44-6146        TCGA-44-6147        TCGA-44-6148 
"OR14A16 WILD-TYPE" "OR14A16 WILD-TYPE" "OR14A16 WILD-TYPE" "OR14A16 WILD-TYPE" 
       TCGA-44-6774        TCGA-44-6775        TCGA-44-6776        TCGA-44-6777 
"OR14A16 WILD-TYPE" "OR14A16 WILD-TYPE" "OR14A16 WILD-TYPE" "OR14A16 WILD-TYPE" 
       TCGA-44-6778        TCGA-44-6779        TCGA-49-4486        TCGA-49-4487 
"OR14A16 WILD-TYPE" "OR14A16 WILD-TYPE" "OR14A16 WILD-TYPE" "OR14A16 WILD-TYPE" 
       TCGA-49-4488        TCGA-49-4490        TCGA-49-4494        TCGA-49-4501 
"OR14A16 WILD-TYPE" "OR14A16 WILD-TYPE" "OR14A16 WILD-TYPE" "OR14A16 WILD-TYPE" 
       TCGA-49-4505        TCGA-49-4506        TCGA-49-4507        TCGA-49-4510 
"OR14A16 WILD-TYPE" "OR14A16 WILD-TYPE" "OR14A16 WILD-TYPE" "OR14A16 WILD-TYPE" 
       TCGA-49-4512        TCGA-49-4514        TCGA-49-6742        TCGA-49-6743 
"OR14A16 WILD-TYPE" "OR14A16 WILD-TYPE" "OR14A16 WILD-TYPE" "OR14A16 WILD-TYPE" 
       TCGA-49-6744        TCGA-49-6745        TCGA-50-5044        TCGA-50-5045 
  "OR14A16 MUTATED" "OR14A16 WILD-TYPE" "OR14A16 WILD-TYPE" "OR14A16 WILD-TYPE" 
       TCGA-50-5049        TCGA-50-5051        TCGA-50-5055        TCGA-50-5066 
"OR14A16 WILD-TYPE" "OR14A16 WILD-TYPE" "OR14A16 WILD-TYPE" "OR14A16 WILD-TYPE" 
       TCGA-50-5068        TCGA-50-5072        TCGA-50-5930        TCGA-50-5931 
"OR14A16 WILD-TYPE" "OR14A16 WILD-TYPE" "OR14A16 WILD-TYPE" "OR14A16 WILD-TYPE" 
       TCGA-50-5932        TCGA-50-5933        TCGA-50-5935        TCGA-50-5936 
"OR14A16 WILD-TYPE"   "OR14A16 MUTATED" "OR14A16 WILD-TYPE" "OR14A16 WILD-TYPE" 
       TCGA-50-5939        TCGA-50-5941        TCGA-50-5942        TCGA-50-5944 
"OR14A16 WILD-TYPE" "OR14A16 WILD-TYPE" "OR14A16 WILD-TYPE" "OR14A16 WILD-TYPE" 
       TCGA-50-5946        TCGA-50-6590        TCGA-50-6591        TCGA-50-6592 
"OR14A16 WILD-TYPE"   "OR14A16 MUTATED" "OR14A16 WILD-TYPE" "OR14A16 WILD-TYPE" 
       TCGA-50-6593        TCGA-50-6594        TCGA-50-6595        TCGA-50-6597 
"OR14A16 WILD-TYPE" "OR14A16 WILD-TYPE" "OR14A16 WILD-TYPE" "OR14A16 WILD-TYPE" 
       TCGA-55-1592        TCGA-55-1594        TCGA-55-1595        TCGA-55-1596 
"OR14A16 WILD-TYPE" "OR14A16 WILD-TYPE" "OR14A16 WILD-TYPE" "OR14A16 WILD-TYPE" 
       TCGA-55-5899        TCGA-55-6543        TCGA-55-6642        TCGA-55-6712 
"OR14A16 WILD-TYPE" "OR14A16 WILD-TYPE" "OR14A16 WILD-TYPE" "OR14A16 WILD-TYPE" 
       TCGA-64-1676        TCGA-64-1677        TCGA-64-1678        TCGA-64-1680 
"OR14A16 WILD-TYPE" "OR14A16 WILD-TYPE" "OR14A16 WILD-TYPE" "OR14A16 WILD-TYPE" 
       TCGA-64-5774        TCGA-64-5775        TCGA-64-5778        TCGA-64-5779 
"OR14A16 WILD-TYPE" "OR14A16 WILD-TYPE" "OR14A16 WILD-TYPE" "OR14A16 WILD-TYPE" 
       TCGA-64-5781        TCGA-64-5815        TCGA-67-3770        TCGA-67-3771 
"OR14A16 WILD-TYPE"   "OR14A16 MUTATED"   "OR14A16 MUTATED" "OR14A16 WILD-TYPE" 
       TCGA-67-3772        TCGA-67-3773        TCGA-67-3774        TCGA-67-6215 
"OR14A16 WILD-TYPE" "OR14A16 WILD-TYPE" "OR14A16 WILD-TYPE" "OR14A16 WILD-TYPE" 
       TCGA-67-6216        TCGA-67-6217        TCGA-71-6725        TCGA-73-4658 
"OR14A16 WILD-TYPE" "OR14A16 WILD-TYPE" "OR14A16 WILD-TYPE" "OR14A16 WILD-TYPE" 
       TCGA-73-4659        TCGA-73-4662        TCGA-73-4666        TCGA-73-4668 
"OR14A16 WILD-TYPE" "OR14A16 WILD-TYPE" "OR14A16 WILD-TYPE" "OR14A16 WILD-TYPE" 
       TCGA-73-4670        TCGA-73-4675        TCGA-73-4676        TCGA-73-4677 
"OR14A16 WILD-TYPE" "OR14A16 WILD-TYPE" "OR14A16 WILD-TYPE" "OR14A16 WILD-TYPE" 
       TCGA-91-6828        TCGA-91-6829        TCGA-91-6831        TCGA-91-6835 
"OR14A16 WILD-TYPE" "OR14A16 WILD-TYPE" "OR14A16 WILD-TYPE" "OR14A16 WILD-TYPE" 
       TCGA-91-6836 
  "OR14A16 MUTATED" 
       TCGA-05-4249        TCGA-05-4250        TCGA-05-4382        TCGA-05-4384 
"OR14A16 WILD-TYPE" "OR14A16 WILD-TYPE" "OR14A16 WILD-TYPE"   "OR14A16 MUTATED" 
       TCGA-05-4390        TCGA-05-4396        TCGA-05-4397        TCGA-05-4398 
"OR14A16 WILD-TYPE" "OR14A16 WILD-TYPE" "OR14A16 WILD-TYPE" "OR14A16 WILD-TYPE" 
       TCGA-05-4402        TCGA-05-4405        TCGA-05-4415        TCGA-05-4417 
"OR14A16 WILD-TYPE" "OR14A16 WILD-TYPE" "OR14A16 WILD-TYPE" "OR14A16 WILD-TYPE" 
       TCGA-05-4418        TCGA-05-4420        TCGA-05-4424        TCGA-05-4426 
"OR14A16 WILD-TYPE" "OR14A16 WILD-TYPE" "OR14A16 WILD-TYPE" "OR14A16 WILD-TYPE" 
       TCGA-05-4427        TCGA-05-4430        TCGA-05-4432        TCGA-05-4433 
"OR14A16 WILD-TYPE" "OR14A16 WILD-TYPE" "OR14A16 WILD-TYPE" "OR14A16 WILD-TYPE" 
       TCGA-05-4434        TCGA-05-5420        TCGA-05-5423        TCGA-05-5425 
"OR14A16 WILD-TYPE" "OR14A16 WILD-TYPE" "OR14A16 WILD-TYPE" "OR14A16 WILD-TYPE" 
       TCGA-05-5429        TCGA-05-5715        TCGA-35-3615        TCGA-35-4122 
"OR14A16 WILD-TYPE" "OR14A16 WILD-TYPE" "OR14A16 WILD-TYPE" "OR14A16 WILD-TYPE" 
       TCGA-35-4123        TCGA-35-5375        TCGA-38-4625        TCGA-38-4626 
"OR14A16 WILD-TYPE" "OR14A16 WILD-TYPE" "OR14A16 WILD-TYPE" "OR14A16 WILD-TYPE" 
       TCGA-38-4627        TCGA-38-4628        TCGA-38-4629        TCGA-38-4630 
"OR14A16 WILD-TYPE" "OR14A16 WILD-TYPE" "OR14A16 WILD-TYPE" "OR14A16 WILD-TYPE" 
       TCGA-38-4631        TCGA-38-4632        TCGA-38-6178        TCGA-44-2655 
"OR14A16 WILD-TYPE"   "OR14A16 MUTATED" "OR14A16 WILD-TYPE" "OR14A16 WILD-TYPE" 
       TCGA-44-2656        TCGA-44-2657        TCGA-44-2659        TCGA-44-2661 
  "OR14A16 MUTATED" "OR14A16 WILD-TYPE" "OR14A16 WILD-TYPE" "OR14A16 WILD-TYPE" 
       TCGA-44-2662        TCGA-44-2665        TCGA-44-2666        TCGA-44-2668 
"OR14A16 WILD-TYPE"   "OR14A16 MUTATED" "OR14A16 WILD-TYPE" "OR14A16 WILD-TYPE" 
       TCGA-44-3396        TCGA-44-3398        TCGA-44-3918        TCGA-44-3919 
"OR14A16 WILD-TYPE" "OR14A16 WILD-TYPE"   "OR14A16 MUTATED" "OR14A16 WILD-TYPE" 
       TCGA-44-4112        TCGA-44-5643        TCGA-44-5645        TCGA-44-6144 
"OR14A16 WILD-TYPE" "OR14A16 WILD-TYPE" "OR14A16 WILD-TYPE" "OR14A16 WILD-TYPE" 
       TCGA-44-6145        TCGA-44-6146        TCGA-44-6147        TCGA-44-6148 
"OR14A16 WILD-TYPE" "OR14A16 WILD-TYPE" "OR14A16 WILD-TYPE" "OR14A16 WILD-TYPE" 
       TCGA-44-6774        TCGA-44-6775        TCGA-44-6776        TCGA-44-6777 
"OR14A16 WILD-TYPE" "OR14A16 WILD-TYPE" "OR14A16 WILD-TYPE" "OR14A16 WILD-TYPE" 
       TCGA-44-6778        TCGA-44-6779        TCGA-49-4486        TCGA-49-4487 
"OR14A16 WILD-TYPE" "OR14A16 WILD-TYPE" "OR14A16 WILD-TYPE" "OR14A16 WILD-TYPE" 
       TCGA-49-4488        TCGA-49-4490        TCGA-49-4494        TCGA-49-4501 
"OR14A16 WILD-TYPE" "OR14A16 WILD-TYPE" "OR14A16 WILD-TYPE" "OR14A16 WILD-TYPE" 
       TCGA-49-4505        TCGA-49-4506        TCGA-49-4507        TCGA-49-4510 
"OR14A16 WILD-TYPE" "OR14A16 WILD-TYPE" "OR14A16 WILD-TYPE" "OR14A16 WILD-TYPE" 
       TCGA-49-4512        TCGA-49-4514        TCGA-49-6742        TCGA-49-6743 
"OR14A16 WILD-TYPE" "OR14A16 WILD-TYPE" "OR14A16 WILD-TYPE" "OR14A16 WILD-TYPE" 
       TCGA-49-6744        TCGA-49-6745        TCGA-50-5044        TCGA-50-5045 
  "OR14A16 MUTATED" "OR14A16 WILD-TYPE" "OR14A16 WILD-TYPE" "OR14A16 WILD-TYPE" 
       TCGA-50-5049        TCGA-50-5051        TCGA-50-5055        TCGA-50-5066 
"OR14A16 WILD-TYPE" "OR14A16 WILD-TYPE" "OR14A16 WILD-TYPE" "OR14A16 WILD-TYPE" 
       TCGA-50-5068        TCGA-50-5072        TCGA-50-5930        TCGA-50-5931 
"OR14A16 WILD-TYPE" "OR14A16 WILD-TYPE" "OR14A16 WILD-TYPE" "OR14A16 WILD-TYPE" 
       TCGA-50-5932        TCGA-50-5933        TCGA-50-5935        TCGA-50-5936 
"OR14A16 WILD-TYPE"   "OR14A16 MUTATED" "OR14A16 WILD-TYPE" "OR14A16 WILD-TYPE" 
       TCGA-50-5939        TCGA-50-5941        TCGA-50-5942        TCGA-50-5944 
"OR14A16 WILD-TYPE" "OR14A16 WILD-TYPE" "OR14A16 WILD-TYPE" "OR14A16 WILD-TYPE" 
       TCGA-50-5946        TCGA-50-6590        TCGA-50-6591        TCGA-50-6592 
"OR14A16 WILD-TYPE"   "OR14A16 MUTATED" "OR14A16 WILD-TYPE" "OR14A16 WILD-TYPE" 
       TCGA-50-6593        TCGA-50-6594        TCGA-50-6595        TCGA-50-6597 
"OR14A16 WILD-TYPE" "OR14A16 WILD-TYPE" "OR14A16 WILD-TYPE" "OR14A16 WILD-TYPE" 
       TCGA-55-1592        TCGA-55-1594        TCGA-55-1595        TCGA-55-1596 
"OR14A16 WILD-TYPE" "OR14A16 WILD-TYPE" "OR14A16 WILD-TYPE" "OR14A16 WILD-TYPE" 
       TCGA-55-5899        TCGA-55-6543        TCGA-55-6642        TCGA-55-6712 
"OR14A16 WILD-TYPE" "OR14A16 WILD-TYPE" "OR14A16 WILD-TYPE" "OR14A16 WILD-TYPE" 
       TCGA-64-1676        TCGA-64-1677        TCGA-64-1678        TCGA-64-1680 
"OR14A16 WILD-TYPE" "OR14A16 WILD-TYPE" "OR14A16 WILD-TYPE" "OR14A16 WILD-TYPE" 
       TCGA-64-5774        TCGA-64-5775        TCGA-64-5778        TCGA-64-5779 
"OR14A16 WILD-TYPE" "OR14A16 WILD-TYPE" "OR14A16 WILD-TYPE" "OR14A16 WILD-TYPE" 
       TCGA-64-5781        TCGA-64-5815        TCGA-67-3770        TCGA-67-3771 
"OR14A16 WILD-TYPE"   "OR14A16 MUTATED"   "OR14A16 MUTATED" "OR14A16 WILD-TYPE" 
       TCGA-67-3772        TCGA-67-3773        TCGA-67-3774        TCGA-67-6215 
"OR14A16 WILD-TYPE" "OR14A16 WILD-TYPE" "OR14A16 WILD-TYPE" "OR14A16 WILD-TYPE" 
       TCGA-67-6216        TCGA-67-6217        TCGA-71-6725        TCGA-73-4658 
"OR14A16 WILD-TYPE" "OR14A16 WILD-TYPE" "OR14A16 WILD-TYPE" "OR14A16 WILD-TYPE" 
       TCGA-73-4659        TCGA-73-4662        TCGA-73-4666        TCGA-73-4668 
"OR14A16 WILD-TYPE" "OR14A16 WILD-TYPE" "OR14A16 WILD-TYPE" "OR14A16 WILD-TYPE" 
       TCGA-73-4670        TCGA-73-4675        TCGA-73-4676        TCGA-73-4677 
"OR14A16 WILD-TYPE" "OR14A16 WILD-TYPE" "OR14A16 WILD-TYPE" "OR14A16 WILD-TYPE" 
       TCGA-91-6828        TCGA-91-6829        TCGA-91-6831        TCGA-91-6835 
"OR14A16 WILD-TYPE" "OR14A16 WILD-TYPE" "OR14A16 WILD-TYPE" "OR14A16 WILD-TYPE" 
       TCGA-91-6836 
  "OR14A16 MUTATED" 
[1] "hr=" "1.6"
D82V2, continuous
D82V3, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  OR14A16 MUTATED      6    6
  OR14A16 WILD-TYPE   87   73
        clus
vv       OR14A16 MUTATED OR14A16 WILD-TYPE
  FEMALE               6                87
  MALE                 6                73
D82V4, continuous
D82V5, multiclass
D82V6, multiclass
    clus
vv   OR14A16 MUTATED OR14A16 WILD-TYPE
  T1               2                39
  T2               9                99
  T3               0                14
  T4               1                 7
D82V7, multiclass
       clus
vv      OR14A16 MUTATED OR14A16 WILD-TYPE
  N0                  6                89
  N1                  4                33
  N2+N3               2                33
D82V8, multiclass
    clus
vv   OR14A16 MUTATED OR14A16 WILD-TYPE
  M0               9               128
  M1               1                 8
  MX               2                20
D82V9, multiclass
     clus
vv    OR14A16 MUTATED OR14A16 WILD-TYPE
  I                 6                82
  II                3                30
  III               2                37
  IV                1                 8
D82V10, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  OR14A16 MUTATED      1   11
  OR14A16 WILD-TYPE   15  145
     clus
vv    OR14A16 MUTATED OR14A16 WILD-TYPE
  NO                1                15
  YES              11               145
D82V11, continuous
D82V12, continuous
D82V13, multiclass
                                             clus
vv                                            OR14A16 MUTATED OR14A16 WILD-TYPE
  CURRENT REFORMED SMOKER FOR < OR = 15 YEARS               5                57
  CURRENT REFORMED SMOKER FOR > 15 YEARS                    4                42
  CURRENT SMOKER                                            1                27
  LIFELONG NON-SMOKER                                       1                23
D82V14, continuous

Clustering(83) Variable = OR6N2 MUTATION ANALYSIS
D83V1, survival
                 sevent
clus2              0  1
  OR6N2 MUTATED    5  2
  OR6N2 WILD-TYPE 94 48
  OR6N2 MUTATED OR6N2 WILD-TYPE 
              7             142 
  OR6N2 MUTATED OR6N2 WILD-TYPE 
              2              48 
$`OR6N2 MUTATED`
TCGA-05-5425 TCGA-35-4123 TCGA-49-4505 TCGA-49-6743 TCGA-50-6594 TCGA-64-5774 
        2.96         5.95        14.07        12.13        12.16        83.84 
TCGA-91-6831 
        1.28 

$`OR6N2 WILD-TYPE`
TCGA-05-4249 TCGA-05-4250 TCGA-05-4382 TCGA-05-4384 TCGA-05-4390 TCGA-05-4396 
       38.07         3.98        19.92        14.01        37.02         9.96 
TCGA-05-4397 TCGA-05-4398 TCGA-05-4402 TCGA-05-4405 TCGA-05-4415 TCGA-05-4417 
       24.03        47.05         8.02        20.05         2.96        14.93 
TCGA-05-4418 TCGA-05-4420 TCGA-05-4424 TCGA-05-4426 TCGA-05-4427 TCGA-05-4430 
        8.98        29.95        30.02        26.01        26.01        25.02 
TCGA-05-4432 TCGA-05-4433 TCGA-05-4434 TCGA-05-5420 TCGA-05-5423 TCGA-05-5429 
       25.02        24.00        15.02         1.02         4.96         0.99 
TCGA-05-5715 TCGA-35-3615 TCGA-35-4122 TCGA-35-5375 TCGA-38-4625 TCGA-38-4626 
        2.04         0.46         7.36         8.68        47.61        85.32 
TCGA-38-4627 TCGA-38-4628 TCGA-38-4629 TCGA-38-4630 TCGA-38-4631 TCGA-38-4632 
       37.71        49.02        28.37        35.28        11.64        44.61 
TCGA-38-6178 TCGA-44-2655 TCGA-44-2656 TCGA-44-2657 TCGA-44-2659 TCGA-44-2661 
        5.19        18.87        19.10        13.15        17.39         3.39 
TCGA-44-2662 TCGA-44-2665 TCGA-44-2666 TCGA-44-2668 TCGA-44-3396 TCGA-44-3398 
       15.78        13.15         3.19         8.09        10.22         8.32 
TCGA-44-3918 TCGA-44-3919 TCGA-44-4112 TCGA-44-5643 TCGA-44-5645 TCGA-44-6144 
        6.44         6.21         4.60         3.48         6.84         0.30 
TCGA-44-6145 TCGA-44-6146 TCGA-44-6147 TCGA-44-6148 TCGA-44-6774 TCGA-44-6775 
        3.35         9.93         7.76         3.12         5.42         2.70 
TCGA-44-6776 TCGA-44-6777 TCGA-44-6778 TCGA-44-6779 TCGA-49-4486 TCGA-49-4487 
       63.72        32.45        36.49        16.41        76.21        28.11 
TCGA-49-4488 TCGA-49-4490 TCGA-49-4494 TCGA-49-4501 TCGA-49-4506 TCGA-49-4507 
       28.57        12.66        35.54        46.72        32.84         8.81 
TCGA-49-4510 TCGA-49-4512 TCGA-49-4514 TCGA-49-6742 TCGA-49-6744 TCGA-49-6745 
       29.46        29.75        43.20        15.02        12.99         4.93 
TCGA-50-5044 TCGA-50-5045 TCGA-50-5049 TCGA-50-5051 TCGA-50-5055 TCGA-50-5066 
       20.48        71.47        48.82        14.96        25.81         9.76 
TCGA-50-5068 TCGA-50-5072 TCGA-50-5930 TCGA-50-5931 TCGA-50-5932 TCGA-50-5933 
       49.28         8.05         9.27         8.78        35.87        77.88 
TCGA-50-5935 TCGA-50-5936 TCGA-50-5939 TCGA-50-5941 TCGA-50-5942 TCGA-50-5944 
       21.47         8.45        15.12         9.37         4.44        12.26 
TCGA-50-5946 TCGA-50-6590 TCGA-50-6591 TCGA-50-6592 TCGA-50-6593 TCGA-50-6595 
       11.47        42.31         3.88        25.51        11.05         6.21 
TCGA-50-6597 TCGA-55-1592 TCGA-55-1594 TCGA-55-1595 TCGA-55-1596 TCGA-55-5899 
       33.37        23.05        38.73        48.62        45.17         2.86 
TCGA-55-6543 TCGA-55-6642 TCGA-55-6712 TCGA-64-1676 TCGA-64-1677 TCGA-64-1678 
        0.07        32.61         0.79        56.81        20.65        39.09 
TCGA-64-1680 TCGA-64-5775 TCGA-64-5778 TCGA-64-5779 TCGA-64-5781 TCGA-64-5815 
       37.02         0.10        30.44        16.67        39.52         7.33 
TCGA-67-3770 TCGA-67-3771 TCGA-67-3772 TCGA-67-3773 TCGA-67-3774 TCGA-67-6215 
        0.99         1.97         0.59         2.04         0.59         0.89 
TCGA-67-6216 TCGA-67-6217 TCGA-71-6725 TCGA-73-4658 TCGA-73-4659 TCGA-73-4662 
        0.69        13.87         2.01        52.57        23.38        29.95 
TCGA-73-4666 TCGA-73-4668 TCGA-73-4670 TCGA-73-4675 TCGA-73-4676 TCGA-73-4677 
       20.28        15.35         0.46         1.32         4.01         1.25 
TCGA-91-6828 TCGA-91-6829 TCGA-91-6835 TCGA-91-6836 
        1.22        41.33         1.15         0.36 

  OR6N2 MUTATED OR6N2 WILD-TYPE 
           1.28            0.07 
  OR6N2 MUTATED OR6N2 WILD-TYPE 
          83.84           85.32 
  OR6N2 MUTATED OR6N2 WILD-TYPE 
          12.13           14.47 
[1] "1.3 - 83.8 (12.1)" "0.1 - 85.3 (14.5)"
     TCGA-05-4249      TCGA-05-4250      TCGA-05-4382      TCGA-05-4384 
"OR6N2 WILD-TYPE" "OR6N2 WILD-TYPE" "OR6N2 WILD-TYPE" "OR6N2 WILD-TYPE" 
     TCGA-05-4390      TCGA-05-4396      TCGA-05-4397      TCGA-05-4398 
"OR6N2 WILD-TYPE" "OR6N2 WILD-TYPE" "OR6N2 WILD-TYPE" "OR6N2 WILD-TYPE" 
     TCGA-05-4402      TCGA-05-4405      TCGA-05-4415      TCGA-05-4417 
"OR6N2 WILD-TYPE" "OR6N2 WILD-TYPE" "OR6N2 WILD-TYPE" "OR6N2 WILD-TYPE" 
     TCGA-05-4418      TCGA-05-4420      TCGA-05-4424      TCGA-05-4426 
"OR6N2 WILD-TYPE" "OR6N2 WILD-TYPE" "OR6N2 WILD-TYPE" "OR6N2 WILD-TYPE" 
     TCGA-05-4427      TCGA-05-4430      TCGA-05-4432      TCGA-05-4433 
"OR6N2 WILD-TYPE" "OR6N2 WILD-TYPE" "OR6N2 WILD-TYPE" "OR6N2 WILD-TYPE" 
     TCGA-05-4434      TCGA-05-5420      TCGA-05-5423      TCGA-05-5425 
"OR6N2 WILD-TYPE" "OR6N2 WILD-TYPE" "OR6N2 WILD-TYPE"   "OR6N2 MUTATED" 
     TCGA-05-5429      TCGA-05-5715      TCGA-35-3615      TCGA-35-4122 
"OR6N2 WILD-TYPE" "OR6N2 WILD-TYPE" "OR6N2 WILD-TYPE" "OR6N2 WILD-TYPE" 
     TCGA-35-4123      TCGA-35-5375      TCGA-38-4625      TCGA-38-4626 
  "OR6N2 MUTATED" "OR6N2 WILD-TYPE" "OR6N2 WILD-TYPE" "OR6N2 WILD-TYPE" 
     TCGA-38-4627      TCGA-38-4628      TCGA-38-4629      TCGA-38-4630 
"OR6N2 WILD-TYPE" "OR6N2 WILD-TYPE" "OR6N2 WILD-TYPE" "OR6N2 WILD-TYPE" 
     TCGA-38-4631      TCGA-38-4632      TCGA-38-6178      TCGA-44-2655 
"OR6N2 WILD-TYPE" "OR6N2 WILD-TYPE" "OR6N2 WILD-TYPE" "OR6N2 WILD-TYPE" 
     TCGA-44-2656      TCGA-44-2657      TCGA-44-2659      TCGA-44-2661 
"OR6N2 WILD-TYPE" "OR6N2 WILD-TYPE" "OR6N2 WILD-TYPE" "OR6N2 WILD-TYPE" 
     TCGA-44-2662      TCGA-44-2665      TCGA-44-2666      TCGA-44-2668 
"OR6N2 WILD-TYPE" "OR6N2 WILD-TYPE" "OR6N2 WILD-TYPE" "OR6N2 WILD-TYPE" 
     TCGA-44-3396      TCGA-44-3398      TCGA-44-3918      TCGA-44-3919 
"OR6N2 WILD-TYPE" "OR6N2 WILD-TYPE" "OR6N2 WILD-TYPE" "OR6N2 WILD-TYPE" 
     TCGA-44-4112      TCGA-44-5643      TCGA-44-5645      TCGA-44-6144 
"OR6N2 WILD-TYPE" "OR6N2 WILD-TYPE" "OR6N2 WILD-TYPE" "OR6N2 WILD-TYPE" 
     TCGA-44-6145      TCGA-44-6146      TCGA-44-6147      TCGA-44-6148 
"OR6N2 WILD-TYPE" "OR6N2 WILD-TYPE" "OR6N2 WILD-TYPE" "OR6N2 WILD-TYPE" 
     TCGA-44-6774      TCGA-44-6775      TCGA-44-6776      TCGA-44-6777 
"OR6N2 WILD-TYPE" "OR6N2 WILD-TYPE" "OR6N2 WILD-TYPE" "OR6N2 WILD-TYPE" 
     TCGA-44-6778      TCGA-44-6779      TCGA-49-4486      TCGA-49-4487 
"OR6N2 WILD-TYPE" "OR6N2 WILD-TYPE" "OR6N2 WILD-TYPE" "OR6N2 WILD-TYPE" 
     TCGA-49-4488      TCGA-49-4490      TCGA-49-4494      TCGA-49-4501 
"OR6N2 WILD-TYPE" "OR6N2 WILD-TYPE" "OR6N2 WILD-TYPE" "OR6N2 WILD-TYPE" 
     TCGA-49-4505      TCGA-49-4506      TCGA-49-4507      TCGA-49-4510 
  "OR6N2 MUTATED" "OR6N2 WILD-TYPE" "OR6N2 WILD-TYPE" "OR6N2 WILD-TYPE" 
     TCGA-49-4512      TCGA-49-4514      TCGA-49-6742      TCGA-49-6743 
"OR6N2 WILD-TYPE" "OR6N2 WILD-TYPE" "OR6N2 WILD-TYPE"   "OR6N2 MUTATED" 
     TCGA-49-6744      TCGA-49-6745      TCGA-50-5044      TCGA-50-5045 
"OR6N2 WILD-TYPE" "OR6N2 WILD-TYPE" "OR6N2 WILD-TYPE" "OR6N2 WILD-TYPE" 
     TCGA-50-5049      TCGA-50-5051      TCGA-50-5055      TCGA-50-5066 
"OR6N2 WILD-TYPE" "OR6N2 WILD-TYPE" "OR6N2 WILD-TYPE" "OR6N2 WILD-TYPE" 
     TCGA-50-5068      TCGA-50-5072      TCGA-50-5930      TCGA-50-5931 
"OR6N2 WILD-TYPE" "OR6N2 WILD-TYPE" "OR6N2 WILD-TYPE" "OR6N2 WILD-TYPE" 
     TCGA-50-5932      TCGA-50-5933      TCGA-50-5935      TCGA-50-5936 
"OR6N2 WILD-TYPE" "OR6N2 WILD-TYPE" "OR6N2 WILD-TYPE" "OR6N2 WILD-TYPE" 
     TCGA-50-5939      TCGA-50-5941      TCGA-50-5942      TCGA-50-5944 
"OR6N2 WILD-TYPE" "OR6N2 WILD-TYPE" "OR6N2 WILD-TYPE" "OR6N2 WILD-TYPE" 
     TCGA-50-5946      TCGA-50-6590      TCGA-50-6591      TCGA-50-6592 
"OR6N2 WILD-TYPE" "OR6N2 WILD-TYPE" "OR6N2 WILD-TYPE" "OR6N2 WILD-TYPE" 
     TCGA-50-6593      TCGA-50-6594      TCGA-50-6595      TCGA-50-6597 
"OR6N2 WILD-TYPE"   "OR6N2 MUTATED" "OR6N2 WILD-TYPE" "OR6N2 WILD-TYPE" 
     TCGA-55-1592      TCGA-55-1594      TCGA-55-1595      TCGA-55-1596 
"OR6N2 WILD-TYPE" "OR6N2 WILD-TYPE" "OR6N2 WILD-TYPE" "OR6N2 WILD-TYPE" 
     TCGA-55-5899      TCGA-55-6543      TCGA-55-6642      TCGA-55-6712 
"OR6N2 WILD-TYPE" "OR6N2 WILD-TYPE" "OR6N2 WILD-TYPE" "OR6N2 WILD-TYPE" 
     TCGA-64-1676      TCGA-64-1677      TCGA-64-1678      TCGA-64-1680 
"OR6N2 WILD-TYPE" "OR6N2 WILD-TYPE" "OR6N2 WILD-TYPE" "OR6N2 WILD-TYPE" 
     TCGA-64-5774      TCGA-64-5775      TCGA-64-5778      TCGA-64-5779 
  "OR6N2 MUTATED" "OR6N2 WILD-TYPE" "OR6N2 WILD-TYPE" "OR6N2 WILD-TYPE" 
     TCGA-64-5781      TCGA-64-5815      TCGA-67-3770      TCGA-67-3771 
"OR6N2 WILD-TYPE" "OR6N2 WILD-TYPE" "OR6N2 WILD-TYPE" "OR6N2 WILD-TYPE" 
     TCGA-67-3772      TCGA-67-3773      TCGA-67-3774      TCGA-67-6215 
"OR6N2 WILD-TYPE" "OR6N2 WILD-TYPE" "OR6N2 WILD-TYPE" "OR6N2 WILD-TYPE" 
     TCGA-67-6216      TCGA-67-6217      TCGA-71-6725      TCGA-73-4658 
"OR6N2 WILD-TYPE" "OR6N2 WILD-TYPE" "OR6N2 WILD-TYPE" "OR6N2 WILD-TYPE" 
     TCGA-73-4659      TCGA-73-4662      TCGA-73-4666      TCGA-73-4668 
"OR6N2 WILD-TYPE" "OR6N2 WILD-TYPE" "OR6N2 WILD-TYPE" "OR6N2 WILD-TYPE" 
     TCGA-73-4670      TCGA-73-4675      TCGA-73-4676      TCGA-73-4677 
"OR6N2 WILD-TYPE" "OR6N2 WILD-TYPE" "OR6N2 WILD-TYPE" "OR6N2 WILD-TYPE" 
     TCGA-91-6828      TCGA-91-6829      TCGA-91-6831      TCGA-91-6835 
"OR6N2 WILD-TYPE" "OR6N2 WILD-TYPE"   "OR6N2 MUTATED" "OR6N2 WILD-TYPE" 
     TCGA-91-6836 
"OR6N2 WILD-TYPE" 
     TCGA-05-4249      TCGA-05-4250      TCGA-05-4382      TCGA-05-4384 
"OR6N2 WILD-TYPE" "OR6N2 WILD-TYPE" "OR6N2 WILD-TYPE" "OR6N2 WILD-TYPE" 
     TCGA-05-4390      TCGA-05-4396      TCGA-05-4397      TCGA-05-4398 
"OR6N2 WILD-TYPE" "OR6N2 WILD-TYPE" "OR6N2 WILD-TYPE" "OR6N2 WILD-TYPE" 
     TCGA-05-4402      TCGA-05-4405      TCGA-05-4415      TCGA-05-4417 
"OR6N2 WILD-TYPE" "OR6N2 WILD-TYPE" "OR6N2 WILD-TYPE" "OR6N2 WILD-TYPE" 
     TCGA-05-4418      TCGA-05-4420      TCGA-05-4424      TCGA-05-4426 
"OR6N2 WILD-TYPE" "OR6N2 WILD-TYPE" "OR6N2 WILD-TYPE" "OR6N2 WILD-TYPE" 
     TCGA-05-4427      TCGA-05-4430      TCGA-05-4432      TCGA-05-4433 
"OR6N2 WILD-TYPE" "OR6N2 WILD-TYPE" "OR6N2 WILD-TYPE" "OR6N2 WILD-TYPE" 
     TCGA-05-4434      TCGA-05-5420      TCGA-05-5423      TCGA-05-5425 
"OR6N2 WILD-TYPE" "OR6N2 WILD-TYPE" "OR6N2 WILD-TYPE"   "OR6N2 MUTATED" 
     TCGA-05-5429      TCGA-05-5715      TCGA-35-3615      TCGA-35-4122 
"OR6N2 WILD-TYPE" "OR6N2 WILD-TYPE" "OR6N2 WILD-TYPE" "OR6N2 WILD-TYPE" 
     TCGA-35-4123      TCGA-35-5375      TCGA-38-4625      TCGA-38-4626 
  "OR6N2 MUTATED" "OR6N2 WILD-TYPE" "OR6N2 WILD-TYPE" "OR6N2 WILD-TYPE" 
     TCGA-38-4627      TCGA-38-4628      TCGA-38-4629      TCGA-38-4630 
"OR6N2 WILD-TYPE" "OR6N2 WILD-TYPE" "OR6N2 WILD-TYPE" "OR6N2 WILD-TYPE" 
     TCGA-38-4631      TCGA-38-4632      TCGA-38-6178      TCGA-44-2655 
"OR6N2 WILD-TYPE" "OR6N2 WILD-TYPE" "OR6N2 WILD-TYPE" "OR6N2 WILD-TYPE" 
     TCGA-44-2656      TCGA-44-2657      TCGA-44-2659      TCGA-44-2661 
"OR6N2 WILD-TYPE" "OR6N2 WILD-TYPE" "OR6N2 WILD-TYPE" "OR6N2 WILD-TYPE" 
     TCGA-44-2662      TCGA-44-2665      TCGA-44-2666      TCGA-44-2668 
"OR6N2 WILD-TYPE" "OR6N2 WILD-TYPE" "OR6N2 WILD-TYPE" "OR6N2 WILD-TYPE" 
     TCGA-44-3396      TCGA-44-3398      TCGA-44-3918      TCGA-44-3919 
"OR6N2 WILD-TYPE" "OR6N2 WILD-TYPE" "OR6N2 WILD-TYPE" "OR6N2 WILD-TYPE" 
     TCGA-44-4112      TCGA-44-5643      TCGA-44-5645      TCGA-44-6144 
"OR6N2 WILD-TYPE" "OR6N2 WILD-TYPE" "OR6N2 WILD-TYPE" "OR6N2 WILD-TYPE" 
     TCGA-44-6145      TCGA-44-6146      TCGA-44-6147      TCGA-44-6148 
"OR6N2 WILD-TYPE" "OR6N2 WILD-TYPE" "OR6N2 WILD-TYPE" "OR6N2 WILD-TYPE" 
     TCGA-44-6774      TCGA-44-6775      TCGA-44-6776      TCGA-44-6777 
"OR6N2 WILD-TYPE" "OR6N2 WILD-TYPE" "OR6N2 WILD-TYPE" "OR6N2 WILD-TYPE" 
     TCGA-44-6778      TCGA-44-6779      TCGA-49-4486      TCGA-49-4487 
"OR6N2 WILD-TYPE" "OR6N2 WILD-TYPE" "OR6N2 WILD-TYPE" "OR6N2 WILD-TYPE" 
     TCGA-49-4488      TCGA-49-4490      TCGA-49-4494      TCGA-49-4501 
"OR6N2 WILD-TYPE" "OR6N2 WILD-TYPE" "OR6N2 WILD-TYPE" "OR6N2 WILD-TYPE" 
     TCGA-49-4505      TCGA-49-4506      TCGA-49-4507      TCGA-49-4510 
  "OR6N2 MUTATED" "OR6N2 WILD-TYPE" "OR6N2 WILD-TYPE" "OR6N2 WILD-TYPE" 
     TCGA-49-4512      TCGA-49-4514      TCGA-49-6742      TCGA-49-6743 
"OR6N2 WILD-TYPE" "OR6N2 WILD-TYPE" "OR6N2 WILD-TYPE"   "OR6N2 MUTATED" 
     TCGA-49-6744      TCGA-49-6745      TCGA-50-5044      TCGA-50-5045 
"OR6N2 WILD-TYPE" "OR6N2 WILD-TYPE" "OR6N2 WILD-TYPE" "OR6N2 WILD-TYPE" 
     TCGA-50-5049      TCGA-50-5051      TCGA-50-5055      TCGA-50-5066 
"OR6N2 WILD-TYPE" "OR6N2 WILD-TYPE" "OR6N2 WILD-TYPE" "OR6N2 WILD-TYPE" 
     TCGA-50-5068      TCGA-50-5072      TCGA-50-5930      TCGA-50-5931 
"OR6N2 WILD-TYPE" "OR6N2 WILD-TYPE" "OR6N2 WILD-TYPE" "OR6N2 WILD-TYPE" 
     TCGA-50-5932      TCGA-50-5933      TCGA-50-5935      TCGA-50-5936 
"OR6N2 WILD-TYPE" "OR6N2 WILD-TYPE" "OR6N2 WILD-TYPE" "OR6N2 WILD-TYPE" 
     TCGA-50-5939      TCGA-50-5941      TCGA-50-5942      TCGA-50-5944 
"OR6N2 WILD-TYPE" "OR6N2 WILD-TYPE" "OR6N2 WILD-TYPE" "OR6N2 WILD-TYPE" 
     TCGA-50-5946      TCGA-50-6590      TCGA-50-6591      TCGA-50-6592 
"OR6N2 WILD-TYPE" "OR6N2 WILD-TYPE" "OR6N2 WILD-TYPE" "OR6N2 WILD-TYPE" 
     TCGA-50-6593      TCGA-50-6594      TCGA-50-6595      TCGA-50-6597 
"OR6N2 WILD-TYPE"   "OR6N2 MUTATED" "OR6N2 WILD-TYPE" "OR6N2 WILD-TYPE" 
     TCGA-55-1592      TCGA-55-1594      TCGA-55-1595      TCGA-55-1596 
"OR6N2 WILD-TYPE" "OR6N2 WILD-TYPE" "OR6N2 WILD-TYPE" "OR6N2 WILD-TYPE" 
     TCGA-55-5899      TCGA-55-6543      TCGA-55-6642      TCGA-55-6712 
"OR6N2 WILD-TYPE" "OR6N2 WILD-TYPE" "OR6N2 WILD-TYPE" "OR6N2 WILD-TYPE" 
     TCGA-64-1676      TCGA-64-1677      TCGA-64-1678      TCGA-64-1680 
"OR6N2 WILD-TYPE" "OR6N2 WILD-TYPE" "OR6N2 WILD-TYPE" "OR6N2 WILD-TYPE" 
     TCGA-64-5774      TCGA-64-5775      TCGA-64-5778      TCGA-64-5779 
  "OR6N2 MUTATED" "OR6N2 WILD-TYPE" "OR6N2 WILD-TYPE" "OR6N2 WILD-TYPE" 
     TCGA-64-5781      TCGA-64-5815      TCGA-67-3770      TCGA-67-3771 
"OR6N2 WILD-TYPE" "OR6N2 WILD-TYPE" "OR6N2 WILD-TYPE" "OR6N2 WILD-TYPE" 
     TCGA-67-3772      TCGA-67-3773      TCGA-67-3774      TCGA-67-6215 
"OR6N2 WILD-TYPE" "OR6N2 WILD-TYPE" "OR6N2 WILD-TYPE" "OR6N2 WILD-TYPE" 
     TCGA-67-6216      TCGA-67-6217      TCGA-71-6725      TCGA-73-4658 
"OR6N2 WILD-TYPE" "OR6N2 WILD-TYPE" "OR6N2 WILD-TYPE" "OR6N2 WILD-TYPE" 
     TCGA-73-4659      TCGA-73-4662      TCGA-73-4666      TCGA-73-4668 
"OR6N2 WILD-TYPE" "OR6N2 WILD-TYPE" "OR6N2 WILD-TYPE" "OR6N2 WILD-TYPE" 
     TCGA-73-4670      TCGA-73-4675      TCGA-73-4676      TCGA-73-4677 
"OR6N2 WILD-TYPE" "OR6N2 WILD-TYPE" "OR6N2 WILD-TYPE" "OR6N2 WILD-TYPE" 
     TCGA-91-6828      TCGA-91-6829      TCGA-91-6831      TCGA-91-6835 
"OR6N2 WILD-TYPE" "OR6N2 WILD-TYPE"   "OR6N2 MUTATED" "OR6N2 WILD-TYPE" 
     TCGA-91-6836 
"OR6N2 WILD-TYPE" 
     TCGA-05-4249      TCGA-05-4250      TCGA-05-4382      TCGA-05-4384 
"OR6N2 WILD-TYPE" "OR6N2 WILD-TYPE" "OR6N2 WILD-TYPE" "OR6N2 WILD-TYPE" 
     TCGA-05-4390      TCGA-05-4396      TCGA-05-4397      TCGA-05-4398 
"OR6N2 WILD-TYPE" "OR6N2 WILD-TYPE" "OR6N2 WILD-TYPE" "OR6N2 WILD-TYPE" 
     TCGA-05-4402      TCGA-05-4405      TCGA-05-4415      TCGA-05-4417 
"OR6N2 WILD-TYPE" "OR6N2 WILD-TYPE" "OR6N2 WILD-TYPE" "OR6N2 WILD-TYPE" 
     TCGA-05-4418      TCGA-05-4420      TCGA-05-4424      TCGA-05-4426 
"OR6N2 WILD-TYPE" "OR6N2 WILD-TYPE" "OR6N2 WILD-TYPE" "OR6N2 WILD-TYPE" 
     TCGA-05-4427      TCGA-05-4430      TCGA-05-4432      TCGA-05-4433 
"OR6N2 WILD-TYPE" "OR6N2 WILD-TYPE" "OR6N2 WILD-TYPE" "OR6N2 WILD-TYPE" 
     TCGA-05-4434      TCGA-05-5420      TCGA-05-5423      TCGA-05-5425 
"OR6N2 WILD-TYPE" "OR6N2 WILD-TYPE" "OR6N2 WILD-TYPE"   "OR6N2 MUTATED" 
     TCGA-05-5429      TCGA-05-5715      TCGA-35-3615      TCGA-35-4122 
"OR6N2 WILD-TYPE" "OR6N2 WILD-TYPE" "OR6N2 WILD-TYPE" "OR6N2 WILD-TYPE" 
     TCGA-35-4123      TCGA-35-5375      TCGA-38-4625      TCGA-38-4626 
  "OR6N2 MUTATED" "OR6N2 WILD-TYPE" "OR6N2 WILD-TYPE" "OR6N2 WILD-TYPE" 
     TCGA-38-4627      TCGA-38-4628      TCGA-38-4629      TCGA-38-4630 
"OR6N2 WILD-TYPE" "OR6N2 WILD-TYPE" "OR6N2 WILD-TYPE" "OR6N2 WILD-TYPE" 
     TCGA-38-4631      TCGA-38-4632      TCGA-38-6178      TCGA-44-2655 
"OR6N2 WILD-TYPE" "OR6N2 WILD-TYPE" "OR6N2 WILD-TYPE" "OR6N2 WILD-TYPE" 
     TCGA-44-2656      TCGA-44-2657      TCGA-44-2659      TCGA-44-2661 
"OR6N2 WILD-TYPE" "OR6N2 WILD-TYPE" "OR6N2 WILD-TYPE" "OR6N2 WILD-TYPE" 
     TCGA-44-2662      TCGA-44-2665      TCGA-44-2666      TCGA-44-2668 
"OR6N2 WILD-TYPE" "OR6N2 WILD-TYPE" "OR6N2 WILD-TYPE" "OR6N2 WILD-TYPE" 
     TCGA-44-3396      TCGA-44-3398      TCGA-44-3918      TCGA-44-3919 
"OR6N2 WILD-TYPE" "OR6N2 WILD-TYPE" "OR6N2 WILD-TYPE" "OR6N2 WILD-TYPE" 
     TCGA-44-4112      TCGA-44-5643      TCGA-44-5645      TCGA-44-6144 
"OR6N2 WILD-TYPE" "OR6N2 WILD-TYPE" "OR6N2 WILD-TYPE" "OR6N2 WILD-TYPE" 
     TCGA-44-6145      TCGA-44-6146      TCGA-44-6147      TCGA-44-6148 
"OR6N2 WILD-TYPE" "OR6N2 WILD-TYPE" "OR6N2 WILD-TYPE" "OR6N2 WILD-TYPE" 
     TCGA-44-6774      TCGA-44-6775      TCGA-44-6776      TCGA-44-6777 
"OR6N2 WILD-TYPE" "OR6N2 WILD-TYPE" "OR6N2 WILD-TYPE" "OR6N2 WILD-TYPE" 
     TCGA-44-6778      TCGA-44-6779      TCGA-49-4486      TCGA-49-4487 
"OR6N2 WILD-TYPE" "OR6N2 WILD-TYPE" "OR6N2 WILD-TYPE" "OR6N2 WILD-TYPE" 
     TCGA-49-4488      TCGA-49-4490      TCGA-49-4494      TCGA-49-4501 
"OR6N2 WILD-TYPE" "OR6N2 WILD-TYPE" "OR6N2 WILD-TYPE" "OR6N2 WILD-TYPE" 
     TCGA-49-4505      TCGA-49-4506      TCGA-49-4507      TCGA-49-4510 
  "OR6N2 MUTATED" "OR6N2 WILD-TYPE" "OR6N2 WILD-TYPE" "OR6N2 WILD-TYPE" 
     TCGA-49-4512      TCGA-49-4514      TCGA-49-6742      TCGA-49-6743 
"OR6N2 WILD-TYPE" "OR6N2 WILD-TYPE" "OR6N2 WILD-TYPE"   "OR6N2 MUTATED" 
     TCGA-49-6744      TCGA-49-6745      TCGA-50-5044      TCGA-50-5045 
"OR6N2 WILD-TYPE" "OR6N2 WILD-TYPE" "OR6N2 WILD-TYPE" "OR6N2 WILD-TYPE" 
     TCGA-50-5049      TCGA-50-5051      TCGA-50-5055      TCGA-50-5066 
"OR6N2 WILD-TYPE" "OR6N2 WILD-TYPE" "OR6N2 WILD-TYPE" "OR6N2 WILD-TYPE" 
     TCGA-50-5068      TCGA-50-5072      TCGA-50-5930      TCGA-50-5931 
"OR6N2 WILD-TYPE" "OR6N2 WILD-TYPE" "OR6N2 WILD-TYPE" "OR6N2 WILD-TYPE" 
     TCGA-50-5932      TCGA-50-5933      TCGA-50-5935      TCGA-50-5936 
"OR6N2 WILD-TYPE" "OR6N2 WILD-TYPE" "OR6N2 WILD-TYPE" "OR6N2 WILD-TYPE" 
     TCGA-50-5939      TCGA-50-5941      TCGA-50-5942      TCGA-50-5944 
"OR6N2 WILD-TYPE" "OR6N2 WILD-TYPE" "OR6N2 WILD-TYPE" "OR6N2 WILD-TYPE" 
     TCGA-50-5946      TCGA-50-6590      TCGA-50-6591      TCGA-50-6592 
"OR6N2 WILD-TYPE" "OR6N2 WILD-TYPE" "OR6N2 WILD-TYPE" "OR6N2 WILD-TYPE" 
     TCGA-50-6593      TCGA-50-6594      TCGA-50-6595      TCGA-50-6597 
"OR6N2 WILD-TYPE"   "OR6N2 MUTATED" "OR6N2 WILD-TYPE" "OR6N2 WILD-TYPE" 
     TCGA-55-1592      TCGA-55-1594      TCGA-55-1595      TCGA-55-1596 
"OR6N2 WILD-TYPE" "OR6N2 WILD-TYPE" "OR6N2 WILD-TYPE" "OR6N2 WILD-TYPE" 
     TCGA-55-5899      TCGA-55-6543      TCGA-55-6642      TCGA-55-6712 
"OR6N2 WILD-TYPE" "OR6N2 WILD-TYPE" "OR6N2 WILD-TYPE" "OR6N2 WILD-TYPE" 
     TCGA-64-1676      TCGA-64-1677      TCGA-64-1678      TCGA-64-1680 
"OR6N2 WILD-TYPE" "OR6N2 WILD-TYPE" "OR6N2 WILD-TYPE" "OR6N2 WILD-TYPE" 
     TCGA-64-5774      TCGA-64-5775      TCGA-64-5778      TCGA-64-5779 
  "OR6N2 MUTATED" "OR6N2 WILD-TYPE" "OR6N2 WILD-TYPE" "OR6N2 WILD-TYPE" 
     TCGA-64-5781      TCGA-64-5815      TCGA-67-3770      TCGA-67-3771 
"OR6N2 WILD-TYPE" "OR6N2 WILD-TYPE" "OR6N2 WILD-TYPE" "OR6N2 WILD-TYPE" 
     TCGA-67-3772      TCGA-67-3773      TCGA-67-3774      TCGA-67-6215 
"OR6N2 WILD-TYPE" "OR6N2 WILD-TYPE" "OR6N2 WILD-TYPE" "OR6N2 WILD-TYPE" 
     TCGA-67-6216      TCGA-67-6217      TCGA-71-6725      TCGA-73-4658 
"OR6N2 WILD-TYPE" "OR6N2 WILD-TYPE" "OR6N2 WILD-TYPE" "OR6N2 WILD-TYPE" 
     TCGA-73-4659      TCGA-73-4662      TCGA-73-4666      TCGA-73-4668 
"OR6N2 WILD-TYPE" "OR6N2 WILD-TYPE" "OR6N2 WILD-TYPE" "OR6N2 WILD-TYPE" 
     TCGA-73-4670      TCGA-73-4675      TCGA-73-4676      TCGA-73-4677 
"OR6N2 WILD-TYPE" "OR6N2 WILD-TYPE" "OR6N2 WILD-TYPE" "OR6N2 WILD-TYPE" 
     TCGA-91-6828      TCGA-91-6829      TCGA-91-6831      TCGA-91-6835 
"OR6N2 WILD-TYPE" "OR6N2 WILD-TYPE"   "OR6N2 MUTATED" "OR6N2 WILD-TYPE" 
     TCGA-91-6836 
"OR6N2 WILD-TYPE" 
[1] "hr=" "1.4"
D83V2, continuous
D83V3, binary
[1] "tbl2"
                 cls
clus              [,1] [,2]
  OR6N2 MUTATED      3    4
  OR6N2 WILD-TYPE   90   75
        clus
vv       OR6N2 MUTATED OR6N2 WILD-TYPE
  FEMALE             3              90
  MALE               4              75
D83V4, continuous
[1] "Remove cluster labels:" "OR6N2 MUTATED"         
clus
  OR6N2 MUTATED OR6N2 WILD-TYPE 
              1              11 
     TCGA-35-4122      TCGA-35-5375      TCGA-64-1677      TCGA-64-5778 
"OR6N2 WILD-TYPE" "OR6N2 WILD-TYPE" "OR6N2 WILD-TYPE" "OR6N2 WILD-TYPE" 
     TCGA-71-6725      TCGA-73-4659      TCGA-73-4662      TCGA-73-4666 
"OR6N2 WILD-TYPE" "OR6N2 WILD-TYPE" "OR6N2 WILD-TYPE" "OR6N2 WILD-TYPE" 
     TCGA-73-4668      TCGA-73-4676      TCGA-75-5122 
"OR6N2 WILD-TYPE" "OR6N2 WILD-TYPE" "OR6N2 WILD-TYPE" 
D83V5, multiclass
D83V6, multiclass
    clus
vv   OR6N2 MUTATED OR6N2 WILD-TYPE
  T1             2              39
  T2             4             104
  T3             1              13
  T4             0               8
D83V7, multiclass
       clus
vv      OR6N2 MUTATED OR6N2 WILD-TYPE
  N0                3              92
  N1                2              35
  N2+N3             2              33
D83V8, multiclass
    clus
vv   OR6N2 MUTATED OR6N2 WILD-TYPE
  M0             5             132
  M1             0               9
  MX             2              20
D83V9, multiclass
     clus
vv    OR6N2 MUTATED OR6N2 WILD-TYPE
  I               3              85
  II              2              31
  III             2              37
  IV              0               9
D83V10, binary
[1] "tbl2"
                 cls
clus              [,1] [,2]
  OR6N2 MUTATED      0    7
  OR6N2 WILD-TYPE   16  149
     clus
vv    OR6N2 MUTATED OR6N2 WILD-TYPE
  NO              0              16
  YES             7             149
D83V11, continuous
D83V12, continuous
D83V13, multiclass
                                             clus
vv                                            OR6N2 MUTATED OR6N2 WILD-TYPE
  CURRENT REFORMED SMOKER FOR < OR = 15 YEARS             5              57
  CURRENT REFORMED SMOKER FOR > 15 YEARS                  1              45
  CURRENT SMOKER                                          1              27
  LIFELONG NON-SMOKER                                     0              24
D83V14, continuous

Clustering(84) Variable = OR13G1 MUTATION ANALYSIS
D84V1, survival
                  sevent
clus2               0  1
  OR13G1 MUTATED    7  2
  OR13G1 WILD-TYPE 92 48
  OR13G1 MUTATED OR13G1 WILD-TYPE 
               9              140 
  OR13G1 MUTATED OR13G1 WILD-TYPE 
               2               48 
$`OR13G1 MUTATED`
TCGA-05-4382 TCGA-05-4427 TCGA-38-4625 TCGA-49-4514 TCGA-64-5778 TCGA-64-5781 
       19.92        26.01        47.61        43.20        30.44        39.52 
TCGA-67-3771 TCGA-73-4677 TCGA-91-6829 
        1.97         1.25        41.33 

$`OR13G1 WILD-TYPE`
TCGA-05-4249 TCGA-05-4250 TCGA-05-4384 TCGA-05-4390 TCGA-05-4396 TCGA-05-4397 
       38.07         3.98        14.01        37.02         9.96        24.03 
TCGA-05-4398 TCGA-05-4402 TCGA-05-4405 TCGA-05-4415 TCGA-05-4417 TCGA-05-4418 
       47.05         8.02        20.05         2.96        14.93         8.98 
TCGA-05-4420 TCGA-05-4424 TCGA-05-4426 TCGA-05-4430 TCGA-05-4432 TCGA-05-4433 
       29.95        30.02        26.01        25.02        25.02        24.00 
TCGA-05-4434 TCGA-05-5420 TCGA-05-5423 TCGA-05-5425 TCGA-05-5429 TCGA-05-5715 
       15.02         1.02         4.96         2.96         0.99         2.04 
TCGA-35-3615 TCGA-35-4122 TCGA-35-4123 TCGA-35-5375 TCGA-38-4626 TCGA-38-4627 
        0.46         7.36         5.95         8.68        85.32        37.71 
TCGA-38-4628 TCGA-38-4629 TCGA-38-4630 TCGA-38-4631 TCGA-38-4632 TCGA-38-6178 
       49.02        28.37        35.28        11.64        44.61         5.19 
TCGA-44-2655 TCGA-44-2656 TCGA-44-2657 TCGA-44-2659 TCGA-44-2661 TCGA-44-2662 
       18.87        19.10        13.15        17.39         3.39        15.78 
TCGA-44-2665 TCGA-44-2666 TCGA-44-2668 TCGA-44-3396 TCGA-44-3398 TCGA-44-3918 
       13.15         3.19         8.09        10.22         8.32         6.44 
TCGA-44-3919 TCGA-44-4112 TCGA-44-5643 TCGA-44-5645 TCGA-44-6144 TCGA-44-6145 
        6.21         4.60         3.48         6.84         0.30         3.35 
TCGA-44-6146 TCGA-44-6147 TCGA-44-6148 TCGA-44-6774 TCGA-44-6775 TCGA-44-6776 
        9.93         7.76         3.12         5.42         2.70        63.72 
TCGA-44-6777 TCGA-44-6778 TCGA-44-6779 TCGA-49-4486 TCGA-49-4487 TCGA-49-4488 
       32.45        36.49        16.41        76.21        28.11        28.57 
TCGA-49-4490 TCGA-49-4494 TCGA-49-4501 TCGA-49-4505 TCGA-49-4506 TCGA-49-4507 
       12.66        35.54        46.72        14.07        32.84         8.81 
TCGA-49-4510 TCGA-49-4512 TCGA-49-6742 TCGA-49-6743 TCGA-49-6744 TCGA-49-6745 
       29.46        29.75        15.02        12.13        12.99         4.93 
TCGA-50-5044 TCGA-50-5045 TCGA-50-5049 TCGA-50-5051 TCGA-50-5055 TCGA-50-5066 
       20.48        71.47        48.82        14.96        25.81         9.76 
TCGA-50-5068 TCGA-50-5072 TCGA-50-5930 TCGA-50-5931 TCGA-50-5932 TCGA-50-5933 
       49.28         8.05         9.27         8.78        35.87        77.88 
TCGA-50-5935 TCGA-50-5936 TCGA-50-5939 TCGA-50-5941 TCGA-50-5942 TCGA-50-5944 
       21.47         8.45        15.12         9.37         4.44        12.26 
TCGA-50-5946 TCGA-50-6590 TCGA-50-6591 TCGA-50-6592 TCGA-50-6593 TCGA-50-6594 
       11.47        42.31         3.88        25.51        11.05        12.16 
TCGA-50-6595 TCGA-50-6597 TCGA-55-1592 TCGA-55-1594 TCGA-55-1595 TCGA-55-1596 
        6.21        33.37        23.05        38.73        48.62        45.17 
TCGA-55-5899 TCGA-55-6543 TCGA-55-6642 TCGA-55-6712 TCGA-64-1676 TCGA-64-1677 
        2.86         0.07        32.61         0.79        56.81        20.65 
TCGA-64-1678 TCGA-64-1680 TCGA-64-5774 TCGA-64-5775 TCGA-64-5779 TCGA-64-5815 
       39.09        37.02        83.84         0.10        16.67         7.33 
TCGA-67-3770 TCGA-67-3772 TCGA-67-3773 TCGA-67-3774 TCGA-67-6215 TCGA-67-6216 
        0.99         0.59         2.04         0.59         0.89         0.69 
TCGA-67-6217 TCGA-71-6725 TCGA-73-4658 TCGA-73-4659 TCGA-73-4662 TCGA-73-4666 
       13.87         2.01        52.57        23.38        29.95        20.28 
TCGA-73-4668 TCGA-73-4670 TCGA-73-4675 TCGA-73-4676 TCGA-91-6828 TCGA-91-6831 
       15.35         0.46         1.32         4.01         1.22         1.28 
TCGA-91-6835 TCGA-91-6836 
        1.15         0.36 

  OR13G1 MUTATED OR13G1 WILD-TYPE 
            1.25             0.07 
  OR13G1 MUTATED OR13G1 WILD-TYPE 
           47.61            85.32 
  OR13G1 MUTATED OR13G1 WILD-TYPE 
           30.44            13.07 
[1] "1.2 - 47.6 (30.4)" "0.1 - 85.3 (13.1)"
      TCGA-05-4249       TCGA-05-4250       TCGA-05-4382       TCGA-05-4384 
"OR13G1 WILD-TYPE" "OR13G1 WILD-TYPE"   "OR13G1 MUTATED" "OR13G1 WILD-TYPE" 
      TCGA-05-4390       TCGA-05-4396       TCGA-05-4397       TCGA-05-4398 
"OR13G1 WILD-TYPE" "OR13G1 WILD-TYPE" "OR13G1 WILD-TYPE" "OR13G1 WILD-TYPE" 
      TCGA-05-4402       TCGA-05-4405       TCGA-05-4415       TCGA-05-4417 
"OR13G1 WILD-TYPE" "OR13G1 WILD-TYPE" "OR13G1 WILD-TYPE" "OR13G1 WILD-TYPE" 
      TCGA-05-4418       TCGA-05-4420       TCGA-05-4424       TCGA-05-4426 
"OR13G1 WILD-TYPE" "OR13G1 WILD-TYPE" "OR13G1 WILD-TYPE" "OR13G1 WILD-TYPE" 
      TCGA-05-4427       TCGA-05-4430       TCGA-05-4432       TCGA-05-4433 
  "OR13G1 MUTATED" "OR13G1 WILD-TYPE" "OR13G1 WILD-TYPE" "OR13G1 WILD-TYPE" 
      TCGA-05-4434       TCGA-05-5420       TCGA-05-5423       TCGA-05-5425 
"OR13G1 WILD-TYPE" "OR13G1 WILD-TYPE" "OR13G1 WILD-TYPE" "OR13G1 WILD-TYPE" 
      TCGA-05-5429       TCGA-05-5715       TCGA-35-3615       TCGA-35-4122 
"OR13G1 WILD-TYPE" "OR13G1 WILD-TYPE" "OR13G1 WILD-TYPE" "OR13G1 WILD-TYPE" 
      TCGA-35-4123       TCGA-35-5375       TCGA-38-4625       TCGA-38-4626 
"OR13G1 WILD-TYPE" "OR13G1 WILD-TYPE"   "OR13G1 MUTATED" "OR13G1 WILD-TYPE" 
      TCGA-38-4627       TCGA-38-4628       TCGA-38-4629       TCGA-38-4630 
"OR13G1 WILD-TYPE" "OR13G1 WILD-TYPE" "OR13G1 WILD-TYPE" "OR13G1 WILD-TYPE" 
      TCGA-38-4631       TCGA-38-4632       TCGA-38-6178       TCGA-44-2655 
"OR13G1 WILD-TYPE" "OR13G1 WILD-TYPE" "OR13G1 WILD-TYPE" "OR13G1 WILD-TYPE" 
      TCGA-44-2656       TCGA-44-2657       TCGA-44-2659       TCGA-44-2661 
"OR13G1 WILD-TYPE" "OR13G1 WILD-TYPE" "OR13G1 WILD-TYPE" "OR13G1 WILD-TYPE" 
      TCGA-44-2662       TCGA-44-2665       TCGA-44-2666       TCGA-44-2668 
"OR13G1 WILD-TYPE" "OR13G1 WILD-TYPE" "OR13G1 WILD-TYPE" "OR13G1 WILD-TYPE" 
      TCGA-44-3396       TCGA-44-3398       TCGA-44-3918       TCGA-44-3919 
"OR13G1 WILD-TYPE" "OR13G1 WILD-TYPE" "OR13G1 WILD-TYPE" "OR13G1 WILD-TYPE" 
      TCGA-44-4112       TCGA-44-5643       TCGA-44-5645       TCGA-44-6144 
"OR13G1 WILD-TYPE" "OR13G1 WILD-TYPE" "OR13G1 WILD-TYPE" "OR13G1 WILD-TYPE" 
      TCGA-44-6145       TCGA-44-6146       TCGA-44-6147       TCGA-44-6148 
"OR13G1 WILD-TYPE" "OR13G1 WILD-TYPE" "OR13G1 WILD-TYPE" "OR13G1 WILD-TYPE" 
      TCGA-44-6774       TCGA-44-6775       TCGA-44-6776       TCGA-44-6777 
"OR13G1 WILD-TYPE" "OR13G1 WILD-TYPE" "OR13G1 WILD-TYPE" "OR13G1 WILD-TYPE" 
      TCGA-44-6778       TCGA-44-6779       TCGA-49-4486       TCGA-49-4487 
"OR13G1 WILD-TYPE" "OR13G1 WILD-TYPE" "OR13G1 WILD-TYPE" "OR13G1 WILD-TYPE" 
      TCGA-49-4488       TCGA-49-4490       TCGA-49-4494       TCGA-49-4501 
"OR13G1 WILD-TYPE" "OR13G1 WILD-TYPE" "OR13G1 WILD-TYPE" "OR13G1 WILD-TYPE" 
      TCGA-49-4505       TCGA-49-4506       TCGA-49-4507       TCGA-49-4510 
"OR13G1 WILD-TYPE" "OR13G1 WILD-TYPE" "OR13G1 WILD-TYPE" "OR13G1 WILD-TYPE" 
      TCGA-49-4512       TCGA-49-4514       TCGA-49-6742       TCGA-49-6743 
"OR13G1 WILD-TYPE"   "OR13G1 MUTATED" "OR13G1 WILD-TYPE" "OR13G1 WILD-TYPE" 
      TCGA-49-6744       TCGA-49-6745       TCGA-50-5044       TCGA-50-5045 
"OR13G1 WILD-TYPE" "OR13G1 WILD-TYPE" "OR13G1 WILD-TYPE" "OR13G1 WILD-TYPE" 
      TCGA-50-5049       TCGA-50-5051       TCGA-50-5055       TCGA-50-5066 
"OR13G1 WILD-TYPE" "OR13G1 WILD-TYPE" "OR13G1 WILD-TYPE" "OR13G1 WILD-TYPE" 
      TCGA-50-5068       TCGA-50-5072       TCGA-50-5930       TCGA-50-5931 
"OR13G1 WILD-TYPE" "OR13G1 WILD-TYPE" "OR13G1 WILD-TYPE" "OR13G1 WILD-TYPE" 
      TCGA-50-5932       TCGA-50-5933       TCGA-50-5935       TCGA-50-5936 
"OR13G1 WILD-TYPE" "OR13G1 WILD-TYPE" "OR13G1 WILD-TYPE" "OR13G1 WILD-TYPE" 
      TCGA-50-5939       TCGA-50-5941       TCGA-50-5942       TCGA-50-5944 
"OR13G1 WILD-TYPE" "OR13G1 WILD-TYPE" "OR13G1 WILD-TYPE" "OR13G1 WILD-TYPE" 
      TCGA-50-5946       TCGA-50-6590       TCGA-50-6591       TCGA-50-6592 
"OR13G1 WILD-TYPE" "OR13G1 WILD-TYPE" "OR13G1 WILD-TYPE" "OR13G1 WILD-TYPE" 
      TCGA-50-6593       TCGA-50-6594       TCGA-50-6595       TCGA-50-6597 
"OR13G1 WILD-TYPE" "OR13G1 WILD-TYPE" "OR13G1 WILD-TYPE" "OR13G1 WILD-TYPE" 
      TCGA-55-1592       TCGA-55-1594       TCGA-55-1595       TCGA-55-1596 
"OR13G1 WILD-TYPE" "OR13G1 WILD-TYPE" "OR13G1 WILD-TYPE" "OR13G1 WILD-TYPE" 
      TCGA-55-5899       TCGA-55-6543       TCGA-55-6642       TCGA-55-6712 
"OR13G1 WILD-TYPE" "OR13G1 WILD-TYPE" "OR13G1 WILD-TYPE" "OR13G1 WILD-TYPE" 
      TCGA-64-1676       TCGA-64-1677       TCGA-64-1678       TCGA-64-1680 
"OR13G1 WILD-TYPE" "OR13G1 WILD-TYPE" "OR13G1 WILD-TYPE" "OR13G1 WILD-TYPE" 
      TCGA-64-5774       TCGA-64-5775       TCGA-64-5778       TCGA-64-5779 
"OR13G1 WILD-TYPE" "OR13G1 WILD-TYPE"   "OR13G1 MUTATED" "OR13G1 WILD-TYPE" 
      TCGA-64-5781       TCGA-64-5815       TCGA-67-3770       TCGA-67-3771 
  "OR13G1 MUTATED" "OR13G1 WILD-TYPE" "OR13G1 WILD-TYPE"   "OR13G1 MUTATED" 
      TCGA-67-3772       TCGA-67-3773       TCGA-67-3774       TCGA-67-6215 
"OR13G1 WILD-TYPE" "OR13G1 WILD-TYPE" "OR13G1 WILD-TYPE" "OR13G1 WILD-TYPE" 
      TCGA-67-6216       TCGA-67-6217       TCGA-71-6725       TCGA-73-4658 
"OR13G1 WILD-TYPE" "OR13G1 WILD-TYPE" "OR13G1 WILD-TYPE" "OR13G1 WILD-TYPE" 
      TCGA-73-4659       TCGA-73-4662       TCGA-73-4666       TCGA-73-4668 
"OR13G1 WILD-TYPE" "OR13G1 WILD-TYPE" "OR13G1 WILD-TYPE" "OR13G1 WILD-TYPE" 
      TCGA-73-4670       TCGA-73-4675       TCGA-73-4676       TCGA-73-4677 
"OR13G1 WILD-TYPE" "OR13G1 WILD-TYPE" "OR13G1 WILD-TYPE"   "OR13G1 MUTATED" 
      TCGA-91-6828       TCGA-91-6829       TCGA-91-6831       TCGA-91-6835 
"OR13G1 WILD-TYPE"   "OR13G1 MUTATED" "OR13G1 WILD-TYPE" "OR13G1 WILD-TYPE" 
      TCGA-91-6836 
"OR13G1 WILD-TYPE" 
      TCGA-05-4249       TCGA-05-4250       TCGA-05-4382       TCGA-05-4384 
"OR13G1 WILD-TYPE" "OR13G1 WILD-TYPE"   "OR13G1 MUTATED" "OR13G1 WILD-TYPE" 
      TCGA-05-4390       TCGA-05-4396       TCGA-05-4397       TCGA-05-4398 
"OR13G1 WILD-TYPE" "OR13G1 WILD-TYPE" "OR13G1 WILD-TYPE" "OR13G1 WILD-TYPE" 
      TCGA-05-4402       TCGA-05-4405       TCGA-05-4415       TCGA-05-4417 
"OR13G1 WILD-TYPE" "OR13G1 WILD-TYPE" "OR13G1 WILD-TYPE" "OR13G1 WILD-TYPE" 
      TCGA-05-4418       TCGA-05-4420       TCGA-05-4424       TCGA-05-4426 
"OR13G1 WILD-TYPE" "OR13G1 WILD-TYPE" "OR13G1 WILD-TYPE" "OR13G1 WILD-TYPE" 
      TCGA-05-4427       TCGA-05-4430       TCGA-05-4432       TCGA-05-4433 
  "OR13G1 MUTATED" "OR13G1 WILD-TYPE" "OR13G1 WILD-TYPE" "OR13G1 WILD-TYPE" 
      TCGA-05-4434       TCGA-05-5420       TCGA-05-5423       TCGA-05-5425 
"OR13G1 WILD-TYPE" "OR13G1 WILD-TYPE" "OR13G1 WILD-TYPE" "OR13G1 WILD-TYPE" 
      TCGA-05-5429       TCGA-05-5715       TCGA-35-3615       TCGA-35-4122 
"OR13G1 WILD-TYPE" "OR13G1 WILD-TYPE" "OR13G1 WILD-TYPE" "OR13G1 WILD-TYPE" 
      TCGA-35-4123       TCGA-35-5375       TCGA-38-4625       TCGA-38-4626 
"OR13G1 WILD-TYPE" "OR13G1 WILD-TYPE"   "OR13G1 MUTATED" "OR13G1 WILD-TYPE" 
      TCGA-38-4627       TCGA-38-4628       TCGA-38-4629       TCGA-38-4630 
"OR13G1 WILD-TYPE" "OR13G1 WILD-TYPE" "OR13G1 WILD-TYPE" "OR13G1 WILD-TYPE" 
      TCGA-38-4631       TCGA-38-4632       TCGA-38-6178       TCGA-44-2655 
"OR13G1 WILD-TYPE" "OR13G1 WILD-TYPE" "OR13G1 WILD-TYPE" "OR13G1 WILD-TYPE" 
      TCGA-44-2656       TCGA-44-2657       TCGA-44-2659       TCGA-44-2661 
"OR13G1 WILD-TYPE" "OR13G1 WILD-TYPE" "OR13G1 WILD-TYPE" "OR13G1 WILD-TYPE" 
      TCGA-44-2662       TCGA-44-2665       TCGA-44-2666       TCGA-44-2668 
"OR13G1 WILD-TYPE" "OR13G1 WILD-TYPE" "OR13G1 WILD-TYPE" "OR13G1 WILD-TYPE" 
      TCGA-44-3396       TCGA-44-3398       TCGA-44-3918       TCGA-44-3919 
"OR13G1 WILD-TYPE" "OR13G1 WILD-TYPE" "OR13G1 WILD-TYPE" "OR13G1 WILD-TYPE" 
      TCGA-44-4112       TCGA-44-5643       TCGA-44-5645       TCGA-44-6144 
"OR13G1 WILD-TYPE" "OR13G1 WILD-TYPE" "OR13G1 WILD-TYPE" "OR13G1 WILD-TYPE" 
      TCGA-44-6145       TCGA-44-6146       TCGA-44-6147       TCGA-44-6148 
"OR13G1 WILD-TYPE" "OR13G1 WILD-TYPE" "OR13G1 WILD-TYPE" "OR13G1 WILD-TYPE" 
      TCGA-44-6774       TCGA-44-6775       TCGA-44-6776       TCGA-44-6777 
"OR13G1 WILD-TYPE" "OR13G1 WILD-TYPE" "OR13G1 WILD-TYPE" "OR13G1 WILD-TYPE" 
      TCGA-44-6778       TCGA-44-6779       TCGA-49-4486       TCGA-49-4487 
"OR13G1 WILD-TYPE" "OR13G1 WILD-TYPE" "OR13G1 WILD-TYPE" "OR13G1 WILD-TYPE" 
      TCGA-49-4488       TCGA-49-4490       TCGA-49-4494       TCGA-49-4501 
"OR13G1 WILD-TYPE" "OR13G1 WILD-TYPE" "OR13G1 WILD-TYPE" "OR13G1 WILD-TYPE" 
      TCGA-49-4505       TCGA-49-4506       TCGA-49-4507       TCGA-49-4510 
"OR13G1 WILD-TYPE" "OR13G1 WILD-TYPE" "OR13G1 WILD-TYPE" "OR13G1 WILD-TYPE" 
      TCGA-49-4512       TCGA-49-4514       TCGA-49-6742       TCGA-49-6743 
"OR13G1 WILD-TYPE"   "OR13G1 MUTATED" "OR13G1 WILD-TYPE" "OR13G1 WILD-TYPE" 
      TCGA-49-6744       TCGA-49-6745       TCGA-50-5044       TCGA-50-5045 
"OR13G1 WILD-TYPE" "OR13G1 WILD-TYPE" "OR13G1 WILD-TYPE" "OR13G1 WILD-TYPE" 
      TCGA-50-5049       TCGA-50-5051       TCGA-50-5055       TCGA-50-5066 
"OR13G1 WILD-TYPE" "OR13G1 WILD-TYPE" "OR13G1 WILD-TYPE" "OR13G1 WILD-TYPE" 
      TCGA-50-5068       TCGA-50-5072       TCGA-50-5930       TCGA-50-5931 
"OR13G1 WILD-TYPE" "OR13G1 WILD-TYPE" "OR13G1 WILD-TYPE" "OR13G1 WILD-TYPE" 
      TCGA-50-5932       TCGA-50-5933       TCGA-50-5935       TCGA-50-5936 
"OR13G1 WILD-TYPE" "OR13G1 WILD-TYPE" "OR13G1 WILD-TYPE" "OR13G1 WILD-TYPE" 
      TCGA-50-5939       TCGA-50-5941       TCGA-50-5942       TCGA-50-5944 
"OR13G1 WILD-TYPE" "OR13G1 WILD-TYPE" "OR13G1 WILD-TYPE" "OR13G1 WILD-TYPE" 
      TCGA-50-5946       TCGA-50-6590       TCGA-50-6591       TCGA-50-6592 
"OR13G1 WILD-TYPE" "OR13G1 WILD-TYPE" "OR13G1 WILD-TYPE" "OR13G1 WILD-TYPE" 
      TCGA-50-6593       TCGA-50-6594       TCGA-50-6595       TCGA-50-6597 
"OR13G1 WILD-TYPE" "OR13G1 WILD-TYPE" "OR13G1 WILD-TYPE" "OR13G1 WILD-TYPE" 
      TCGA-55-1592       TCGA-55-1594       TCGA-55-1595       TCGA-55-1596 
"OR13G1 WILD-TYPE" "OR13G1 WILD-TYPE" "OR13G1 WILD-TYPE" "OR13G1 WILD-TYPE" 
      TCGA-55-5899       TCGA-55-6543       TCGA-55-6642       TCGA-55-6712 
"OR13G1 WILD-TYPE" "OR13G1 WILD-TYPE" "OR13G1 WILD-TYPE" "OR13G1 WILD-TYPE" 
      TCGA-64-1676       TCGA-64-1677       TCGA-64-1678       TCGA-64-1680 
"OR13G1 WILD-TYPE" "OR13G1 WILD-TYPE" "OR13G1 WILD-TYPE" "OR13G1 WILD-TYPE" 
      TCGA-64-5774       TCGA-64-5775       TCGA-64-5778       TCGA-64-5779 
"OR13G1 WILD-TYPE" "OR13G1 WILD-TYPE"   "OR13G1 MUTATED" "OR13G1 WILD-TYPE" 
      TCGA-64-5781       TCGA-64-5815       TCGA-67-3770       TCGA-67-3771 
  "OR13G1 MUTATED" "OR13G1 WILD-TYPE" "OR13G1 WILD-TYPE"   "OR13G1 MUTATED" 
      TCGA-67-3772       TCGA-67-3773       TCGA-67-3774       TCGA-67-6215 
"OR13G1 WILD-TYPE" "OR13G1 WILD-TYPE" "OR13G1 WILD-TYPE" "OR13G1 WILD-TYPE" 
      TCGA-67-6216       TCGA-67-6217       TCGA-71-6725       TCGA-73-4658 
"OR13G1 WILD-TYPE" "OR13G1 WILD-TYPE" "OR13G1 WILD-TYPE" "OR13G1 WILD-TYPE" 
      TCGA-73-4659       TCGA-73-4662       TCGA-73-4666       TCGA-73-4668 
"OR13G1 WILD-TYPE" "OR13G1 WILD-TYPE" "OR13G1 WILD-TYPE" "OR13G1 WILD-TYPE" 
      TCGA-73-4670       TCGA-73-4675       TCGA-73-4676       TCGA-73-4677 
"OR13G1 WILD-TYPE" "OR13G1 WILD-TYPE" "OR13G1 WILD-TYPE"   "OR13G1 MUTATED" 
      TCGA-91-6828       TCGA-91-6829       TCGA-91-6831       TCGA-91-6835 
"OR13G1 WILD-TYPE"   "OR13G1 MUTATED" "OR13G1 WILD-TYPE" "OR13G1 WILD-TYPE" 
      TCGA-91-6836 
"OR13G1 WILD-TYPE" 
      TCGA-05-4249       TCGA-05-4250       TCGA-05-4382       TCGA-05-4384 
"OR13G1 WILD-TYPE" "OR13G1 WILD-TYPE"   "OR13G1 MUTATED" "OR13G1 WILD-TYPE" 
      TCGA-05-4390       TCGA-05-4396       TCGA-05-4397       TCGA-05-4398 
"OR13G1 WILD-TYPE" "OR13G1 WILD-TYPE" "OR13G1 WILD-TYPE" "OR13G1 WILD-TYPE" 
      TCGA-05-4402       TCGA-05-4405       TCGA-05-4415       TCGA-05-4417 
"OR13G1 WILD-TYPE" "OR13G1 WILD-TYPE" "OR13G1 WILD-TYPE" "OR13G1 WILD-TYPE" 
      TCGA-05-4418       TCGA-05-4420       TCGA-05-4424       TCGA-05-4426 
"OR13G1 WILD-TYPE" "OR13G1 WILD-TYPE" "OR13G1 WILD-TYPE" "OR13G1 WILD-TYPE" 
      TCGA-05-4427       TCGA-05-4430       TCGA-05-4432       TCGA-05-4433 
  "OR13G1 MUTATED" "OR13G1 WILD-TYPE" "OR13G1 WILD-TYPE" "OR13G1 WILD-TYPE" 
      TCGA-05-4434       TCGA-05-5420       TCGA-05-5423       TCGA-05-5425 
"OR13G1 WILD-TYPE" "OR13G1 WILD-TYPE" "OR13G1 WILD-TYPE" "OR13G1 WILD-TYPE" 
      TCGA-05-5429       TCGA-05-5715       TCGA-35-3615       TCGA-35-4122 
"OR13G1 WILD-TYPE" "OR13G1 WILD-TYPE" "OR13G1 WILD-TYPE" "OR13G1 WILD-TYPE" 
      TCGA-35-4123       TCGA-35-5375       TCGA-38-4625       TCGA-38-4626 
"OR13G1 WILD-TYPE" "OR13G1 WILD-TYPE"   "OR13G1 MUTATED" "OR13G1 WILD-TYPE" 
      TCGA-38-4627       TCGA-38-4628       TCGA-38-4629       TCGA-38-4630 
"OR13G1 WILD-TYPE" "OR13G1 WILD-TYPE" "OR13G1 WILD-TYPE" "OR13G1 WILD-TYPE" 
      TCGA-38-4631       TCGA-38-4632       TCGA-38-6178       TCGA-44-2655 
"OR13G1 WILD-TYPE" "OR13G1 WILD-TYPE" "OR13G1 WILD-TYPE" "OR13G1 WILD-TYPE" 
      TCGA-44-2656       TCGA-44-2657       TCGA-44-2659       TCGA-44-2661 
"OR13G1 WILD-TYPE" "OR13G1 WILD-TYPE" "OR13G1 WILD-TYPE" "OR13G1 WILD-TYPE" 
      TCGA-44-2662       TCGA-44-2665       TCGA-44-2666       TCGA-44-2668 
"OR13G1 WILD-TYPE" "OR13G1 WILD-TYPE" "OR13G1 WILD-TYPE" "OR13G1 WILD-TYPE" 
      TCGA-44-3396       TCGA-44-3398       TCGA-44-3918       TCGA-44-3919 
"OR13G1 WILD-TYPE" "OR13G1 WILD-TYPE" "OR13G1 WILD-TYPE" "OR13G1 WILD-TYPE" 
      TCGA-44-4112       TCGA-44-5643       TCGA-44-5645       TCGA-44-6144 
"OR13G1 WILD-TYPE" "OR13G1 WILD-TYPE" "OR13G1 WILD-TYPE" "OR13G1 WILD-TYPE" 
      TCGA-44-6145       TCGA-44-6146       TCGA-44-6147       TCGA-44-6148 
"OR13G1 WILD-TYPE" "OR13G1 WILD-TYPE" "OR13G1 WILD-TYPE" "OR13G1 WILD-TYPE" 
      TCGA-44-6774       TCGA-44-6775       TCGA-44-6776       TCGA-44-6777 
"OR13G1 WILD-TYPE" "OR13G1 WILD-TYPE" "OR13G1 WILD-TYPE" "OR13G1 WILD-TYPE" 
      TCGA-44-6778       TCGA-44-6779       TCGA-49-4486       TCGA-49-4487 
"OR13G1 WILD-TYPE" "OR13G1 WILD-TYPE" "OR13G1 WILD-TYPE" "OR13G1 WILD-TYPE" 
      TCGA-49-4488       TCGA-49-4490       TCGA-49-4494       TCGA-49-4501 
"OR13G1 WILD-TYPE" "OR13G1 WILD-TYPE" "OR13G1 WILD-TYPE" "OR13G1 WILD-TYPE" 
      TCGA-49-4505       TCGA-49-4506       TCGA-49-4507       TCGA-49-4510 
"OR13G1 WILD-TYPE" "OR13G1 WILD-TYPE" "OR13G1 WILD-TYPE" "OR13G1 WILD-TYPE" 
      TCGA-49-4512       TCGA-49-4514       TCGA-49-6742       TCGA-49-6743 
"OR13G1 WILD-TYPE"   "OR13G1 MUTATED" "OR13G1 WILD-TYPE" "OR13G1 WILD-TYPE" 
      TCGA-49-6744       TCGA-49-6745       TCGA-50-5044       TCGA-50-5045 
"OR13G1 WILD-TYPE" "OR13G1 WILD-TYPE" "OR13G1 WILD-TYPE" "OR13G1 WILD-TYPE" 
      TCGA-50-5049       TCGA-50-5051       TCGA-50-5055       TCGA-50-5066 
"OR13G1 WILD-TYPE" "OR13G1 WILD-TYPE" "OR13G1 WILD-TYPE" "OR13G1 WILD-TYPE" 
      TCGA-50-5068       TCGA-50-5072       TCGA-50-5930       TCGA-50-5931 
"OR13G1 WILD-TYPE" "OR13G1 WILD-TYPE" "OR13G1 WILD-TYPE" "OR13G1 WILD-TYPE" 
      TCGA-50-5932       TCGA-50-5933       TCGA-50-5935       TCGA-50-5936 
"OR13G1 WILD-TYPE" "OR13G1 WILD-TYPE" "OR13G1 WILD-TYPE" "OR13G1 WILD-TYPE" 
      TCGA-50-5939       TCGA-50-5941       TCGA-50-5942       TCGA-50-5944 
"OR13G1 WILD-TYPE" "OR13G1 WILD-TYPE" "OR13G1 WILD-TYPE" "OR13G1 WILD-TYPE" 
      TCGA-50-5946       TCGA-50-6590       TCGA-50-6591       TCGA-50-6592 
"OR13G1 WILD-TYPE" "OR13G1 WILD-TYPE" "OR13G1 WILD-TYPE" "OR13G1 WILD-TYPE" 
      TCGA-50-6593       TCGA-50-6594       TCGA-50-6595       TCGA-50-6597 
"OR13G1 WILD-TYPE" "OR13G1 WILD-TYPE" "OR13G1 WILD-TYPE" "OR13G1 WILD-TYPE" 
      TCGA-55-1592       TCGA-55-1594       TCGA-55-1595       TCGA-55-1596 
"OR13G1 WILD-TYPE" "OR13G1 WILD-TYPE" "OR13G1 WILD-TYPE" "OR13G1 WILD-TYPE" 
      TCGA-55-5899       TCGA-55-6543       TCGA-55-6642       TCGA-55-6712 
"OR13G1 WILD-TYPE" "OR13G1 WILD-TYPE" "OR13G1 WILD-TYPE" "OR13G1 WILD-TYPE" 
      TCGA-64-1676       TCGA-64-1677       TCGA-64-1678       TCGA-64-1680 
"OR13G1 WILD-TYPE" "OR13G1 WILD-TYPE" "OR13G1 WILD-TYPE" "OR13G1 WILD-TYPE" 
      TCGA-64-5774       TCGA-64-5775       TCGA-64-5778       TCGA-64-5779 
"OR13G1 WILD-TYPE" "OR13G1 WILD-TYPE"   "OR13G1 MUTATED" "OR13G1 WILD-TYPE" 
      TCGA-64-5781       TCGA-64-5815       TCGA-67-3770       TCGA-67-3771 
  "OR13G1 MUTATED" "OR13G1 WILD-TYPE" "OR13G1 WILD-TYPE"   "OR13G1 MUTATED" 
      TCGA-67-3772       TCGA-67-3773       TCGA-67-3774       TCGA-67-6215 
"OR13G1 WILD-TYPE" "OR13G1 WILD-TYPE" "OR13G1 WILD-TYPE" "OR13G1 WILD-TYPE" 
      TCGA-67-6216       TCGA-67-6217       TCGA-71-6725       TCGA-73-4658 
"OR13G1 WILD-TYPE" "OR13G1 WILD-TYPE" "OR13G1 WILD-TYPE" "OR13G1 WILD-TYPE" 
      TCGA-73-4659       TCGA-73-4662       TCGA-73-4666       TCGA-73-4668 
"OR13G1 WILD-TYPE" "OR13G1 WILD-TYPE" "OR13G1 WILD-TYPE" "OR13G1 WILD-TYPE" 
      TCGA-73-4670       TCGA-73-4675       TCGA-73-4676       TCGA-73-4677 
"OR13G1 WILD-TYPE" "OR13G1 WILD-TYPE" "OR13G1 WILD-TYPE"   "OR13G1 MUTATED" 
      TCGA-91-6828       TCGA-91-6829       TCGA-91-6831       TCGA-91-6835 
"OR13G1 WILD-TYPE"   "OR13G1 MUTATED" "OR13G1 WILD-TYPE" "OR13G1 WILD-TYPE" 
      TCGA-91-6836 
"OR13G1 WILD-TYPE" 
[1] "hr=" "2.3"
D84V2, continuous
D84V3, binary
[1] "tbl2"
                  cls
clus               [,1] [,2]
  OR13G1 MUTATED      5    4
  OR13G1 WILD-TYPE   88   75
        clus
vv       OR13G1 MUTATED OR13G1 WILD-TYPE
  FEMALE              5               88
  MALE                4               75
D84V4, continuous
[1] "Remove cluster labels:" "OR13G1 MUTATED"        
clus
  OR13G1 MUTATED OR13G1 WILD-TYPE 
               1               11 
      TCGA-35-4122       TCGA-35-4123       TCGA-35-5375       TCGA-64-1677 
"OR13G1 WILD-TYPE" "OR13G1 WILD-TYPE" "OR13G1 WILD-TYPE" "OR13G1 WILD-TYPE" 
      TCGA-71-6725       TCGA-73-4659       TCGA-73-4662       TCGA-73-4666 
"OR13G1 WILD-TYPE" "OR13G1 WILD-TYPE" "OR13G1 WILD-TYPE" "OR13G1 WILD-TYPE" 
      TCGA-73-4668       TCGA-73-4676       TCGA-75-5122 
"OR13G1 WILD-TYPE" "OR13G1 WILD-TYPE" "OR13G1 WILD-TYPE" 
D84V5, multiclass
D84V6, multiclass
    clus
vv   OR13G1 MUTATED OR13G1 WILD-TYPE
  T1              2               39
  T2              7              101
  T3              0               14
  T4              0                8
D84V7, multiclass
       clus
vv      OR13G1 MUTATED OR13G1 WILD-TYPE
  N0                 8               87
  N1                 1               36
  N2+N3              0               35
D84V8, multiclass
    clus
vv   OR13G1 MUTATED OR13G1 WILD-TYPE
  M0              8              129
  M1              0                9
  MX              1               21
D84V9, multiclass
     clus
vv    OR13G1 MUTATED OR13G1 WILD-TYPE
  I                8               80
  II               1               32
  III              0               39
  IV               0                9
D84V10, binary
[1] "tbl2"
                  cls
clus               [,1] [,2]
  OR13G1 MUTATED      0    9
  OR13G1 WILD-TYPE   16  147
     clus
vv    OR13G1 MUTATED OR13G1 WILD-TYPE
  NO               0               16
  YES              9              147
D84V11, continuous
D84V12, continuous
D84V13, multiclass
                                             clus
vv                                            OR13G1 MUTATED OR13G1 WILD-TYPE
  CURRENT REFORMED SMOKER FOR < OR = 15 YEARS              6               56
  CURRENT REFORMED SMOKER FOR > 15 YEARS                   2               44
  CURRENT SMOKER                                           1               27
  LIFELONG NON-SMOKER                                      0               24
D84V14, continuous

Clustering(85) Variable = ADAMTS16 MUTATION ANALYSIS
D85V1, survival
                    sevent
clus2                 0  1
  ADAMTS16 MUTATED   13  7
  ADAMTS16 WILD-TYPE 86 43
  ADAMTS16 MUTATED ADAMTS16 WILD-TYPE 
                20                129 
  ADAMTS16 MUTATED ADAMTS16 WILD-TYPE 
                 7                 43 
$`ADAMTS16 MUTATED`
TCGA-05-4396 TCGA-05-4397 TCGA-05-4402 TCGA-05-4420 TCGA-05-4427 TCGA-05-4432 
        9.96        24.03         8.02        29.95        26.01        25.02 
TCGA-38-4632 TCGA-44-2656 TCGA-44-2657 TCGA-44-3919 TCGA-44-5643 TCGA-50-5049 
       44.61        19.10        13.15         6.21         3.48        48.82 
TCGA-50-6594 TCGA-55-1592 TCGA-67-3771 TCGA-73-4659 TCGA-73-4668 TCGA-73-4670 
       12.16        23.05         1.97        23.38        15.35         0.46 
TCGA-91-6828 TCGA-91-6836 
        1.22         0.36 

$`ADAMTS16 WILD-TYPE`
TCGA-05-4249 TCGA-05-4250 TCGA-05-4382 TCGA-05-4384 TCGA-05-4390 TCGA-05-4398 
       38.07         3.98        19.92        14.01        37.02        47.05 
TCGA-05-4405 TCGA-05-4415 TCGA-05-4417 TCGA-05-4418 TCGA-05-4424 TCGA-05-4426 
       20.05         2.96        14.93         8.98        30.02        26.01 
TCGA-05-4430 TCGA-05-4433 TCGA-05-4434 TCGA-05-5420 TCGA-05-5423 TCGA-05-5425 
       25.02        24.00        15.02         1.02         4.96         2.96 
TCGA-05-5429 TCGA-05-5715 TCGA-35-3615 TCGA-35-4122 TCGA-35-4123 TCGA-35-5375 
        0.99         2.04         0.46         7.36         5.95         8.68 
TCGA-38-4625 TCGA-38-4626 TCGA-38-4627 TCGA-38-4628 TCGA-38-4629 TCGA-38-4630 
       47.61        85.32        37.71        49.02        28.37        35.28 
TCGA-38-4631 TCGA-38-6178 TCGA-44-2655 TCGA-44-2659 TCGA-44-2661 TCGA-44-2662 
       11.64         5.19        18.87        17.39         3.39        15.78 
TCGA-44-2665 TCGA-44-2666 TCGA-44-2668 TCGA-44-3396 TCGA-44-3398 TCGA-44-3918 
       13.15         3.19         8.09        10.22         8.32         6.44 
TCGA-44-4112 TCGA-44-5645 TCGA-44-6144 TCGA-44-6145 TCGA-44-6146 TCGA-44-6147 
        4.60         6.84         0.30         3.35         9.93         7.76 
TCGA-44-6148 TCGA-44-6774 TCGA-44-6775 TCGA-44-6776 TCGA-44-6777 TCGA-44-6778 
        3.12         5.42         2.70        63.72        32.45        36.49 
TCGA-44-6779 TCGA-49-4486 TCGA-49-4487 TCGA-49-4488 TCGA-49-4490 TCGA-49-4494 
       16.41        76.21        28.11        28.57        12.66        35.54 
TCGA-49-4501 TCGA-49-4505 TCGA-49-4506 TCGA-49-4507 TCGA-49-4510 TCGA-49-4512 
       46.72        14.07        32.84         8.81        29.46        29.75 
TCGA-49-4514 TCGA-49-6742 TCGA-49-6743 TCGA-49-6744 TCGA-49-6745 TCGA-50-5044 
       43.20        15.02        12.13        12.99         4.93        20.48 
TCGA-50-5045 TCGA-50-5051 TCGA-50-5055 TCGA-50-5066 TCGA-50-5068 TCGA-50-5072 
       71.47        14.96        25.81         9.76        49.28         8.05 
TCGA-50-5930 TCGA-50-5931 TCGA-50-5932 TCGA-50-5933 TCGA-50-5935 TCGA-50-5936 
        9.27         8.78        35.87        77.88        21.47         8.45 
TCGA-50-5939 TCGA-50-5941 TCGA-50-5942 TCGA-50-5944 TCGA-50-5946 TCGA-50-6590 
       15.12         9.37         4.44        12.26        11.47        42.31 
TCGA-50-6591 TCGA-50-6592 TCGA-50-6593 TCGA-50-6595 TCGA-50-6597 TCGA-55-1594 
        3.88        25.51        11.05         6.21        33.37        38.73 
TCGA-55-1595 TCGA-55-1596 TCGA-55-5899 TCGA-55-6543 TCGA-55-6642 TCGA-55-6712 
       48.62        45.17         2.86         0.07        32.61         0.79 
TCGA-64-1676 TCGA-64-1677 TCGA-64-1678 TCGA-64-1680 TCGA-64-5774 TCGA-64-5775 
       56.81        20.65        39.09        37.02        83.84         0.10 
TCGA-64-5778 TCGA-64-5779 TCGA-64-5781 TCGA-64-5815 TCGA-67-3770 TCGA-67-3772 
       30.44        16.67        39.52         7.33         0.99         0.59 
TCGA-67-3773 TCGA-67-3774 TCGA-67-6215 TCGA-67-6216 TCGA-67-6217 TCGA-71-6725 
        2.04         0.59         0.89         0.69        13.87         2.01 
TCGA-73-4658 TCGA-73-4662 TCGA-73-4666 TCGA-73-4675 TCGA-73-4676 TCGA-73-4677 
       52.57        29.95        20.28         1.32         4.01         1.25 
TCGA-91-6829 TCGA-91-6831 TCGA-91-6835 
       41.33         1.28         1.15 

  ADAMTS16 MUTATED ADAMTS16 WILD-TYPE 
              0.36               0.07 
  ADAMTS16 MUTATED ADAMTS16 WILD-TYPE 
             48.82              85.32 
  ADAMTS16 MUTATED ADAMTS16 WILD-TYPE 
             14.25              13.87 
[1] "0.4 - 48.8 (14.2)" "0.1 - 85.3 (13.9)"
        TCGA-05-4249         TCGA-05-4250         TCGA-05-4382 
"ADAMTS16 WILD-TYPE" "ADAMTS16 WILD-TYPE" "ADAMTS16 WILD-TYPE" 
        TCGA-05-4384         TCGA-05-4390         TCGA-05-4396 
"ADAMTS16 WILD-TYPE" "ADAMTS16 WILD-TYPE"   "ADAMTS16 MUTATED" 
        TCGA-05-4397         TCGA-05-4398         TCGA-05-4402 
  "ADAMTS16 MUTATED" "ADAMTS16 WILD-TYPE"   "ADAMTS16 MUTATED" 
        TCGA-05-4405         TCGA-05-4415         TCGA-05-4417 
"ADAMTS16 WILD-TYPE" "ADAMTS16 WILD-TYPE" "ADAMTS16 WILD-TYPE" 
        TCGA-05-4418         TCGA-05-4420         TCGA-05-4424 
"ADAMTS16 WILD-TYPE"   "ADAMTS16 MUTATED" "ADAMTS16 WILD-TYPE" 
        TCGA-05-4426         TCGA-05-4427         TCGA-05-4430 
"ADAMTS16 WILD-TYPE"   "ADAMTS16 MUTATED" "ADAMTS16 WILD-TYPE" 
        TCGA-05-4432         TCGA-05-4433         TCGA-05-4434 
  "ADAMTS16 MUTATED" "ADAMTS16 WILD-TYPE" "ADAMTS16 WILD-TYPE" 
        TCGA-05-5420         TCGA-05-5423         TCGA-05-5425 
"ADAMTS16 WILD-TYPE" "ADAMTS16 WILD-TYPE" "ADAMTS16 WILD-TYPE" 
        TCGA-05-5429         TCGA-05-5715         TCGA-35-3615 
"ADAMTS16 WILD-TYPE" "ADAMTS16 WILD-TYPE" "ADAMTS16 WILD-TYPE" 
        TCGA-35-4122         TCGA-35-4123         TCGA-35-5375 
"ADAMTS16 WILD-TYPE" "ADAMTS16 WILD-TYPE" "ADAMTS16 WILD-TYPE" 
        TCGA-38-4625         TCGA-38-4626         TCGA-38-4627 
"ADAMTS16 WILD-TYPE" "ADAMTS16 WILD-TYPE" "ADAMTS16 WILD-TYPE" 
        TCGA-38-4628         TCGA-38-4629         TCGA-38-4630 
"ADAMTS16 WILD-TYPE" "ADAMTS16 WILD-TYPE" "ADAMTS16 WILD-TYPE" 
        TCGA-38-4631         TCGA-38-4632         TCGA-38-6178 
"ADAMTS16 WILD-TYPE"   "ADAMTS16 MUTATED" "ADAMTS16 WILD-TYPE" 
        TCGA-44-2655         TCGA-44-2656         TCGA-44-2657 
"ADAMTS16 WILD-TYPE"   "ADAMTS16 MUTATED"   "ADAMTS16 MUTATED" 
        TCGA-44-2659         TCGA-44-2661         TCGA-44-2662 
"ADAMTS16 WILD-TYPE" "ADAMTS16 WILD-TYPE" "ADAMTS16 WILD-TYPE" 
        TCGA-44-2665         TCGA-44-2666         TCGA-44-2668 
"ADAMTS16 WILD-TYPE" "ADAMTS16 WILD-TYPE" "ADAMTS16 WILD-TYPE" 
        TCGA-44-3396         TCGA-44-3398         TCGA-44-3918 
"ADAMTS16 WILD-TYPE" "ADAMTS16 WILD-TYPE" "ADAMTS16 WILD-TYPE" 
        TCGA-44-3919         TCGA-44-4112         TCGA-44-5643 
  "ADAMTS16 MUTATED" "ADAMTS16 WILD-TYPE"   "ADAMTS16 MUTATED" 
        TCGA-44-5645         TCGA-44-6144         TCGA-44-6145 
"ADAMTS16 WILD-TYPE" "ADAMTS16 WILD-TYPE" "ADAMTS16 WILD-TYPE" 
        TCGA-44-6146         TCGA-44-6147         TCGA-44-6148 
"ADAMTS16 WILD-TYPE" "ADAMTS16 WILD-TYPE" "ADAMTS16 WILD-TYPE" 
        TCGA-44-6774         TCGA-44-6775         TCGA-44-6776 
"ADAMTS16 WILD-TYPE" "ADAMTS16 WILD-TYPE" "ADAMTS16 WILD-TYPE" 
        TCGA-44-6777         TCGA-44-6778         TCGA-44-6779 
"ADAMTS16 WILD-TYPE" "ADAMTS16 WILD-TYPE" "ADAMTS16 WILD-TYPE" 
        TCGA-49-4486         TCGA-49-4487         TCGA-49-4488 
"ADAMTS16 WILD-TYPE" "ADAMTS16 WILD-TYPE" "ADAMTS16 WILD-TYPE" 
        TCGA-49-4490         TCGA-49-4494         TCGA-49-4501 
"ADAMTS16 WILD-TYPE" "ADAMTS16 WILD-TYPE" "ADAMTS16 WILD-TYPE" 
        TCGA-49-4505         TCGA-49-4506         TCGA-49-4507 
"ADAMTS16 WILD-TYPE" "ADAMTS16 WILD-TYPE" "ADAMTS16 WILD-TYPE" 
        TCGA-49-4510         TCGA-49-4512         TCGA-49-4514 
"ADAMTS16 WILD-TYPE" "ADAMTS16 WILD-TYPE" "ADAMTS16 WILD-TYPE" 
        TCGA-49-6742         TCGA-49-6743         TCGA-49-6744 
"ADAMTS16 WILD-TYPE" "ADAMTS16 WILD-TYPE" "ADAMTS16 WILD-TYPE" 
        TCGA-49-6745         TCGA-50-5044         TCGA-50-5045 
"ADAMTS16 WILD-TYPE" "ADAMTS16 WILD-TYPE" "ADAMTS16 WILD-TYPE" 
        TCGA-50-5049         TCGA-50-5051         TCGA-50-5055 
  "ADAMTS16 MUTATED" "ADAMTS16 WILD-TYPE" "ADAMTS16 WILD-TYPE" 
        TCGA-50-5066         TCGA-50-5068         TCGA-50-5072 
"ADAMTS16 WILD-TYPE" "ADAMTS16 WILD-TYPE" "ADAMTS16 WILD-TYPE" 
        TCGA-50-5930         TCGA-50-5931         TCGA-50-5932 
"ADAMTS16 WILD-TYPE" "ADAMTS16 WILD-TYPE" "ADAMTS16 WILD-TYPE" 
        TCGA-50-5933         TCGA-50-5935         TCGA-50-5936 
"ADAMTS16 WILD-TYPE" "ADAMTS16 WILD-TYPE" "ADAMTS16 WILD-TYPE" 
        TCGA-50-5939         TCGA-50-5941         TCGA-50-5942 
"ADAMTS16 WILD-TYPE" "ADAMTS16 WILD-TYPE" "ADAMTS16 WILD-TYPE" 
        TCGA-50-5944         TCGA-50-5946         TCGA-50-6590 
"ADAMTS16 WILD-TYPE" "ADAMTS16 WILD-TYPE" "ADAMTS16 WILD-TYPE" 
        TCGA-50-6591         TCGA-50-6592         TCGA-50-6593 
"ADAMTS16 WILD-TYPE" "ADAMTS16 WILD-TYPE" "ADAMTS16 WILD-TYPE" 
        TCGA-50-6594         TCGA-50-6595         TCGA-50-6597 
  "ADAMTS16 MUTATED" "ADAMTS16 WILD-TYPE" "ADAMTS16 WILD-TYPE" 
        TCGA-55-1592         TCGA-55-1594         TCGA-55-1595 
  "ADAMTS16 MUTATED" "ADAMTS16 WILD-TYPE" "ADAMTS16 WILD-TYPE" 
        TCGA-55-1596         TCGA-55-5899         TCGA-55-6543 
"ADAMTS16 WILD-TYPE" "ADAMTS16 WILD-TYPE" "ADAMTS16 WILD-TYPE" 
        TCGA-55-6642         TCGA-55-6712         TCGA-64-1676 
"ADAMTS16 WILD-TYPE" "ADAMTS16 WILD-TYPE" "ADAMTS16 WILD-TYPE" 
        TCGA-64-1677         TCGA-64-1678         TCGA-64-1680 
"ADAMTS16 WILD-TYPE" "ADAMTS16 WILD-TYPE" "ADAMTS16 WILD-TYPE" 
        TCGA-64-5774         TCGA-64-5775         TCGA-64-5778 
"ADAMTS16 WILD-TYPE" "ADAMTS16 WILD-TYPE" "ADAMTS16 WILD-TYPE" 
        TCGA-64-5779         TCGA-64-5781         TCGA-64-5815 
"ADAMTS16 WILD-TYPE" "ADAMTS16 WILD-TYPE" "ADAMTS16 WILD-TYPE" 
        TCGA-67-3770         TCGA-67-3771         TCGA-67-3772 
"ADAMTS16 WILD-TYPE"   "ADAMTS16 MUTATED" "ADAMTS16 WILD-TYPE" 
        TCGA-67-3773         TCGA-67-3774         TCGA-67-6215 
"ADAMTS16 WILD-TYPE" "ADAMTS16 WILD-TYPE" "ADAMTS16 WILD-TYPE" 
        TCGA-67-6216         TCGA-67-6217         TCGA-71-6725 
"ADAMTS16 WILD-TYPE" "ADAMTS16 WILD-TYPE" "ADAMTS16 WILD-TYPE" 
        TCGA-73-4658         TCGA-73-4659         TCGA-73-4662 
"ADAMTS16 WILD-TYPE"   "ADAMTS16 MUTATED" "ADAMTS16 WILD-TYPE" 
        TCGA-73-4666         TCGA-73-4668         TCGA-73-4670 
"ADAMTS16 WILD-TYPE"   "ADAMTS16 MUTATED"   "ADAMTS16 MUTATED" 
        TCGA-73-4675         TCGA-73-4676         TCGA-73-4677 
"ADAMTS16 WILD-TYPE" "ADAMTS16 WILD-TYPE" "ADAMTS16 WILD-TYPE" 
        TCGA-91-6828         TCGA-91-6829         TCGA-91-6831 
  "ADAMTS16 MUTATED" "ADAMTS16 WILD-TYPE" "ADAMTS16 WILD-TYPE" 
        TCGA-91-6835         TCGA-91-6836 
"ADAMTS16 WILD-TYPE"   "ADAMTS16 MUTATED" 
        TCGA-05-4249         TCGA-05-4250         TCGA-05-4382 
"ADAMTS16 WILD-TYPE" "ADAMTS16 WILD-TYPE" "ADAMTS16 WILD-TYPE" 
        TCGA-05-4384         TCGA-05-4390         TCGA-05-4396 
"ADAMTS16 WILD-TYPE" "ADAMTS16 WILD-TYPE"   "ADAMTS16 MUTATED" 
        TCGA-05-4397         TCGA-05-4398         TCGA-05-4402 
  "ADAMTS16 MUTATED" "ADAMTS16 WILD-TYPE"   "ADAMTS16 MUTATED" 
        TCGA-05-4405         TCGA-05-4415         TCGA-05-4417 
"ADAMTS16 WILD-TYPE" "ADAMTS16 WILD-TYPE" "ADAMTS16 WILD-TYPE" 
        TCGA-05-4418         TCGA-05-4420         TCGA-05-4424 
"ADAMTS16 WILD-TYPE"   "ADAMTS16 MUTATED" "ADAMTS16 WILD-TYPE" 
        TCGA-05-4426         TCGA-05-4427         TCGA-05-4430 
"ADAMTS16 WILD-TYPE"   "ADAMTS16 MUTATED" "ADAMTS16 WILD-TYPE" 
        TCGA-05-4432         TCGA-05-4433         TCGA-05-4434 
  "ADAMTS16 MUTATED" "ADAMTS16 WILD-TYPE" "ADAMTS16 WILD-TYPE" 
        TCGA-05-5420         TCGA-05-5423         TCGA-05-5425 
"ADAMTS16 WILD-TYPE" "ADAMTS16 WILD-TYPE" "ADAMTS16 WILD-TYPE" 
        TCGA-05-5429         TCGA-05-5715         TCGA-35-3615 
"ADAMTS16 WILD-TYPE" "ADAMTS16 WILD-TYPE" "ADAMTS16 WILD-TYPE" 
        TCGA-35-4122         TCGA-35-4123         TCGA-35-5375 
"ADAMTS16 WILD-TYPE" "ADAMTS16 WILD-TYPE" "ADAMTS16 WILD-TYPE" 
        TCGA-38-4625         TCGA-38-4626         TCGA-38-4627 
"ADAMTS16 WILD-TYPE" "ADAMTS16 WILD-TYPE" "ADAMTS16 WILD-TYPE" 
        TCGA-38-4628         TCGA-38-4629         TCGA-38-4630 
"ADAMTS16 WILD-TYPE" "ADAMTS16 WILD-TYPE" "ADAMTS16 WILD-TYPE" 
        TCGA-38-4631         TCGA-38-4632         TCGA-38-6178 
"ADAMTS16 WILD-TYPE"   "ADAMTS16 MUTATED" "ADAMTS16 WILD-TYPE" 
        TCGA-44-2655         TCGA-44-2656         TCGA-44-2657 
"ADAMTS16 WILD-TYPE"   "ADAMTS16 MUTATED"   "ADAMTS16 MUTATED" 
        TCGA-44-2659         TCGA-44-2661         TCGA-44-2662 
"ADAMTS16 WILD-TYPE" "ADAMTS16 WILD-TYPE" "ADAMTS16 WILD-TYPE" 
        TCGA-44-2665         TCGA-44-2666         TCGA-44-2668 
"ADAMTS16 WILD-TYPE" "ADAMTS16 WILD-TYPE" "ADAMTS16 WILD-TYPE" 
        TCGA-44-3396         TCGA-44-3398         TCGA-44-3918 
"ADAMTS16 WILD-TYPE" "ADAMTS16 WILD-TYPE" "ADAMTS16 WILD-TYPE" 
        TCGA-44-3919         TCGA-44-4112         TCGA-44-5643 
  "ADAMTS16 MUTATED" "ADAMTS16 WILD-TYPE"   "ADAMTS16 MUTATED" 
        TCGA-44-5645         TCGA-44-6144         TCGA-44-6145 
"ADAMTS16 WILD-TYPE" "ADAMTS16 WILD-TYPE" "ADAMTS16 WILD-TYPE" 
        TCGA-44-6146         TCGA-44-6147         TCGA-44-6148 
"ADAMTS16 WILD-TYPE" "ADAMTS16 WILD-TYPE" "ADAMTS16 WILD-TYPE" 
        TCGA-44-6774         TCGA-44-6775         TCGA-44-6776 
"ADAMTS16 WILD-TYPE" "ADAMTS16 WILD-TYPE" "ADAMTS16 WILD-TYPE" 
        TCGA-44-6777         TCGA-44-6778         TCGA-44-6779 
"ADAMTS16 WILD-TYPE" "ADAMTS16 WILD-TYPE" "ADAMTS16 WILD-TYPE" 
        TCGA-49-4486         TCGA-49-4487         TCGA-49-4488 
"ADAMTS16 WILD-TYPE" "ADAMTS16 WILD-TYPE" "ADAMTS16 WILD-TYPE" 
        TCGA-49-4490         TCGA-49-4494         TCGA-49-4501 
"ADAMTS16 WILD-TYPE" "ADAMTS16 WILD-TYPE" "ADAMTS16 WILD-TYPE" 
        TCGA-49-4505         TCGA-49-4506         TCGA-49-4507 
"ADAMTS16 WILD-TYPE" "ADAMTS16 WILD-TYPE" "ADAMTS16 WILD-TYPE" 
        TCGA-49-4510         TCGA-49-4512         TCGA-49-4514 
"ADAMTS16 WILD-TYPE" "ADAMTS16 WILD-TYPE" "ADAMTS16 WILD-TYPE" 
        TCGA-49-6742         TCGA-49-6743         TCGA-49-6744 
"ADAMTS16 WILD-TYPE" "ADAMTS16 WILD-TYPE" "ADAMTS16 WILD-TYPE" 
        TCGA-49-6745         TCGA-50-5044         TCGA-50-5045 
"ADAMTS16 WILD-TYPE" "ADAMTS16 WILD-TYPE" "ADAMTS16 WILD-TYPE" 
        TCGA-50-5049         TCGA-50-5051         TCGA-50-5055 
  "ADAMTS16 MUTATED" "ADAMTS16 WILD-TYPE" "ADAMTS16 WILD-TYPE" 
        TCGA-50-5066         TCGA-50-5068         TCGA-50-5072 
"ADAMTS16 WILD-TYPE" "ADAMTS16 WILD-TYPE" "ADAMTS16 WILD-TYPE" 
        TCGA-50-5930         TCGA-50-5931         TCGA-50-5932 
"ADAMTS16 WILD-TYPE" "ADAMTS16 WILD-TYPE" "ADAMTS16 WILD-TYPE" 
        TCGA-50-5933         TCGA-50-5935         TCGA-50-5936 
"ADAMTS16 WILD-TYPE" "ADAMTS16 WILD-TYPE" "ADAMTS16 WILD-TYPE" 
        TCGA-50-5939         TCGA-50-5941         TCGA-50-5942 
"ADAMTS16 WILD-TYPE" "ADAMTS16 WILD-TYPE" "ADAMTS16 WILD-TYPE" 
        TCGA-50-5944         TCGA-50-5946         TCGA-50-6590 
"ADAMTS16 WILD-TYPE" "ADAMTS16 WILD-TYPE" "ADAMTS16 WILD-TYPE" 
        TCGA-50-6591         TCGA-50-6592         TCGA-50-6593 
"ADAMTS16 WILD-TYPE" "ADAMTS16 WILD-TYPE" "ADAMTS16 WILD-TYPE" 
        TCGA-50-6594         TCGA-50-6595         TCGA-50-6597 
  "ADAMTS16 MUTATED" "ADAMTS16 WILD-TYPE" "ADAMTS16 WILD-TYPE" 
        TCGA-55-1592         TCGA-55-1594         TCGA-55-1595 
  "ADAMTS16 MUTATED" "ADAMTS16 WILD-TYPE" "ADAMTS16 WILD-TYPE" 
        TCGA-55-1596         TCGA-55-5899         TCGA-55-6543 
"ADAMTS16 WILD-TYPE" "ADAMTS16 WILD-TYPE" "ADAMTS16 WILD-TYPE" 
        TCGA-55-6642         TCGA-55-6712         TCGA-64-1676 
"ADAMTS16 WILD-TYPE" "ADAMTS16 WILD-TYPE" "ADAMTS16 WILD-TYPE" 
        TCGA-64-1677         TCGA-64-1678         TCGA-64-1680 
"ADAMTS16 WILD-TYPE" "ADAMTS16 WILD-TYPE" "ADAMTS16 WILD-TYPE" 
        TCGA-64-5774         TCGA-64-5775         TCGA-64-5778 
"ADAMTS16 WILD-TYPE" "ADAMTS16 WILD-TYPE" "ADAMTS16 WILD-TYPE" 
        TCGA-64-5779         TCGA-64-5781         TCGA-64-5815 
"ADAMTS16 WILD-TYPE" "ADAMTS16 WILD-TYPE" "ADAMTS16 WILD-TYPE" 
        TCGA-67-3770         TCGA-67-3771         TCGA-67-3772 
"ADAMTS16 WILD-TYPE"   "ADAMTS16 MUTATED" "ADAMTS16 WILD-TYPE" 
        TCGA-67-3773         TCGA-67-3774         TCGA-67-6215 
"ADAMTS16 WILD-TYPE" "ADAMTS16 WILD-TYPE" "ADAMTS16 WILD-TYPE" 
        TCGA-67-6216         TCGA-67-6217         TCGA-71-6725 
"ADAMTS16 WILD-TYPE" "ADAMTS16 WILD-TYPE" "ADAMTS16 WILD-TYPE" 
        TCGA-73-4658         TCGA-73-4659         TCGA-73-4662 
"ADAMTS16 WILD-TYPE"   "ADAMTS16 MUTATED" "ADAMTS16 WILD-TYPE" 
        TCGA-73-4666         TCGA-73-4668         TCGA-73-4670 
"ADAMTS16 WILD-TYPE"   "ADAMTS16 MUTATED"   "ADAMTS16 MUTATED" 
        TCGA-73-4675         TCGA-73-4676         TCGA-73-4677 
"ADAMTS16 WILD-TYPE" "ADAMTS16 WILD-TYPE" "ADAMTS16 WILD-TYPE" 
        TCGA-91-6828         TCGA-91-6829         TCGA-91-6831 
  "ADAMTS16 MUTATED" "ADAMTS16 WILD-TYPE" "ADAMTS16 WILD-TYPE" 
        TCGA-91-6835         TCGA-91-6836 
"ADAMTS16 WILD-TYPE"   "ADAMTS16 MUTATED" 
        TCGA-05-4249         TCGA-05-4250         TCGA-05-4382 
"ADAMTS16 WILD-TYPE" "ADAMTS16 WILD-TYPE" "ADAMTS16 WILD-TYPE" 
        TCGA-05-4384         TCGA-05-4390         TCGA-05-4396 
"ADAMTS16 WILD-TYPE" "ADAMTS16 WILD-TYPE"   "ADAMTS16 MUTATED" 
        TCGA-05-4397         TCGA-05-4398         TCGA-05-4402 
  "ADAMTS16 MUTATED" "ADAMTS16 WILD-TYPE"   "ADAMTS16 MUTATED" 
        TCGA-05-4405         TCGA-05-4415         TCGA-05-4417 
"ADAMTS16 WILD-TYPE" "ADAMTS16 WILD-TYPE" "ADAMTS16 WILD-TYPE" 
        TCGA-05-4418         TCGA-05-4420         TCGA-05-4424 
"ADAMTS16 WILD-TYPE"   "ADAMTS16 MUTATED" "ADAMTS16 WILD-TYPE" 
        TCGA-05-4426         TCGA-05-4427         TCGA-05-4430 
"ADAMTS16 WILD-TYPE"   "ADAMTS16 MUTATED" "ADAMTS16 WILD-TYPE" 
        TCGA-05-4432         TCGA-05-4433         TCGA-05-4434 
  "ADAMTS16 MUTATED" "ADAMTS16 WILD-TYPE" "ADAMTS16 WILD-TYPE" 
        TCGA-05-5420         TCGA-05-5423         TCGA-05-5425 
"ADAMTS16 WILD-TYPE" "ADAMTS16 WILD-TYPE" "ADAMTS16 WILD-TYPE" 
        TCGA-05-5429         TCGA-05-5715         TCGA-35-3615 
"ADAMTS16 WILD-TYPE" "ADAMTS16 WILD-TYPE" "ADAMTS16 WILD-TYPE" 
        TCGA-35-4122         TCGA-35-4123         TCGA-35-5375 
"ADAMTS16 WILD-TYPE" "ADAMTS16 WILD-TYPE" "ADAMTS16 WILD-TYPE" 
        TCGA-38-4625         TCGA-38-4626         TCGA-38-4627 
"ADAMTS16 WILD-TYPE" "ADAMTS16 WILD-TYPE" "ADAMTS16 WILD-TYPE" 
        TCGA-38-4628         TCGA-38-4629         TCGA-38-4630 
"ADAMTS16 WILD-TYPE" "ADAMTS16 WILD-TYPE" "ADAMTS16 WILD-TYPE" 
        TCGA-38-4631         TCGA-38-4632         TCGA-38-6178 
"ADAMTS16 WILD-TYPE"   "ADAMTS16 MUTATED" "ADAMTS16 WILD-TYPE" 
        TCGA-44-2655         TCGA-44-2656         TCGA-44-2657 
"ADAMTS16 WILD-TYPE"   "ADAMTS16 MUTATED"   "ADAMTS16 MUTATED" 
        TCGA-44-2659         TCGA-44-2661         TCGA-44-2662 
"ADAMTS16 WILD-TYPE" "ADAMTS16 WILD-TYPE" "ADAMTS16 WILD-TYPE" 
        TCGA-44-2665         TCGA-44-2666         TCGA-44-2668 
"ADAMTS16 WILD-TYPE" "ADAMTS16 WILD-TYPE" "ADAMTS16 WILD-TYPE" 
        TCGA-44-3396         TCGA-44-3398         TCGA-44-3918 
"ADAMTS16 WILD-TYPE" "ADAMTS16 WILD-TYPE" "ADAMTS16 WILD-TYPE" 
        TCGA-44-3919         TCGA-44-4112         TCGA-44-5643 
  "ADAMTS16 MUTATED" "ADAMTS16 WILD-TYPE"   "ADAMTS16 MUTATED" 
        TCGA-44-5645         TCGA-44-6144         TCGA-44-6145 
"ADAMTS16 WILD-TYPE" "ADAMTS16 WILD-TYPE" "ADAMTS16 WILD-TYPE" 
        TCGA-44-6146         TCGA-44-6147         TCGA-44-6148 
"ADAMTS16 WILD-TYPE" "ADAMTS16 WILD-TYPE" "ADAMTS16 WILD-TYPE" 
        TCGA-44-6774         TCGA-44-6775         TCGA-44-6776 
"ADAMTS16 WILD-TYPE" "ADAMTS16 WILD-TYPE" "ADAMTS16 WILD-TYPE" 
        TCGA-44-6777         TCGA-44-6778         TCGA-44-6779 
"ADAMTS16 WILD-TYPE" "ADAMTS16 WILD-TYPE" "ADAMTS16 WILD-TYPE" 
        TCGA-49-4486         TCGA-49-4487         TCGA-49-4488 
"ADAMTS16 WILD-TYPE" "ADAMTS16 WILD-TYPE" "ADAMTS16 WILD-TYPE" 
        TCGA-49-4490         TCGA-49-4494         TCGA-49-4501 
"ADAMTS16 WILD-TYPE" "ADAMTS16 WILD-TYPE" "ADAMTS16 WILD-TYPE" 
        TCGA-49-4505         TCGA-49-4506         TCGA-49-4507 
"ADAMTS16 WILD-TYPE" "ADAMTS16 WILD-TYPE" "ADAMTS16 WILD-TYPE" 
        TCGA-49-4510         TCGA-49-4512         TCGA-49-4514 
"ADAMTS16 WILD-TYPE" "ADAMTS16 WILD-TYPE" "ADAMTS16 WILD-TYPE" 
        TCGA-49-6742         TCGA-49-6743         TCGA-49-6744 
"ADAMTS16 WILD-TYPE" "ADAMTS16 WILD-TYPE" "ADAMTS16 WILD-TYPE" 
        TCGA-49-6745         TCGA-50-5044         TCGA-50-5045 
"ADAMTS16 WILD-TYPE" "ADAMTS16 WILD-TYPE" "ADAMTS16 WILD-TYPE" 
        TCGA-50-5049         TCGA-50-5051         TCGA-50-5055 
  "ADAMTS16 MUTATED" "ADAMTS16 WILD-TYPE" "ADAMTS16 WILD-TYPE" 
        TCGA-50-5066         TCGA-50-5068         TCGA-50-5072 
"ADAMTS16 WILD-TYPE" "ADAMTS16 WILD-TYPE" "ADAMTS16 WILD-TYPE" 
        TCGA-50-5930         TCGA-50-5931         TCGA-50-5932 
"ADAMTS16 WILD-TYPE" "ADAMTS16 WILD-TYPE" "ADAMTS16 WILD-TYPE" 
        TCGA-50-5933         TCGA-50-5935         TCGA-50-5936 
"ADAMTS16 WILD-TYPE" "ADAMTS16 WILD-TYPE" "ADAMTS16 WILD-TYPE" 
        TCGA-50-5939         TCGA-50-5941         TCGA-50-5942 
"ADAMTS16 WILD-TYPE" "ADAMTS16 WILD-TYPE" "ADAMTS16 WILD-TYPE" 
        TCGA-50-5944         TCGA-50-5946         TCGA-50-6590 
"ADAMTS16 WILD-TYPE" "ADAMTS16 WILD-TYPE" "ADAMTS16 WILD-TYPE" 
        TCGA-50-6591         TCGA-50-6592         TCGA-50-6593 
"ADAMTS16 WILD-TYPE" "ADAMTS16 WILD-TYPE" "ADAMTS16 WILD-TYPE" 
        TCGA-50-6594         TCGA-50-6595         TCGA-50-6597 
  "ADAMTS16 MUTATED" "ADAMTS16 WILD-TYPE" "ADAMTS16 WILD-TYPE" 
        TCGA-55-1592         TCGA-55-1594         TCGA-55-1595 
  "ADAMTS16 MUTATED" "ADAMTS16 WILD-TYPE" "ADAMTS16 WILD-TYPE" 
        TCGA-55-1596         TCGA-55-5899         TCGA-55-6543 
"ADAMTS16 WILD-TYPE" "ADAMTS16 WILD-TYPE" "ADAMTS16 WILD-TYPE" 
        TCGA-55-6642         TCGA-55-6712         TCGA-64-1676 
"ADAMTS16 WILD-TYPE" "ADAMTS16 WILD-TYPE" "ADAMTS16 WILD-TYPE" 
        TCGA-64-1677         TCGA-64-1678         TCGA-64-1680 
"ADAMTS16 WILD-TYPE" "ADAMTS16 WILD-TYPE" "ADAMTS16 WILD-TYPE" 
        TCGA-64-5774         TCGA-64-5775         TCGA-64-5778 
"ADAMTS16 WILD-TYPE" "ADAMTS16 WILD-TYPE" "ADAMTS16 WILD-TYPE" 
        TCGA-64-5779         TCGA-64-5781         TCGA-64-5815 
"ADAMTS16 WILD-TYPE" "ADAMTS16 WILD-TYPE" "ADAMTS16 WILD-TYPE" 
        TCGA-67-3770         TCGA-67-3771         TCGA-67-3772 
"ADAMTS16 WILD-TYPE"   "ADAMTS16 MUTATED" "ADAMTS16 WILD-TYPE" 
        TCGA-67-3773         TCGA-67-3774         TCGA-67-6215 
"ADAMTS16 WILD-TYPE" "ADAMTS16 WILD-TYPE" "ADAMTS16 WILD-TYPE" 
        TCGA-67-6216         TCGA-67-6217         TCGA-71-6725 
"ADAMTS16 WILD-TYPE" "ADAMTS16 WILD-TYPE" "ADAMTS16 WILD-TYPE" 
        TCGA-73-4658         TCGA-73-4659         TCGA-73-4662 
"ADAMTS16 WILD-TYPE"   "ADAMTS16 MUTATED" "ADAMTS16 WILD-TYPE" 
        TCGA-73-4666         TCGA-73-4668         TCGA-73-4670 
"ADAMTS16 WILD-TYPE"   "ADAMTS16 MUTATED"   "ADAMTS16 MUTATED" 
        TCGA-73-4675         TCGA-73-4676         TCGA-73-4677 
"ADAMTS16 WILD-TYPE" "ADAMTS16 WILD-TYPE" "ADAMTS16 WILD-TYPE" 
        TCGA-91-6828         TCGA-91-6829         TCGA-91-6831 
  "ADAMTS16 MUTATED" "ADAMTS16 WILD-TYPE" "ADAMTS16 WILD-TYPE" 
        TCGA-91-6835         TCGA-91-6836 
"ADAMTS16 WILD-TYPE"   "ADAMTS16 MUTATED" 
[1] "hr=" "1.4"
D85V2, continuous
D85V3, binary
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  ADAMTS16 MUTATED      9   13
  ADAMTS16 WILD-TYPE   84   66
        clus
vv       ADAMTS16 MUTATED ADAMTS16 WILD-TYPE
  FEMALE                9                 84
  MALE                 13                 66
D85V4, continuous
D85V5, multiclass
D85V6, multiclass
    clus
vv   ADAMTS16 MUTATED ADAMTS16 WILD-TYPE
  T1                3                 38
  T2               16                 92
  T3                2                 12
  T4                1                  7
D85V7, multiclass
       clus
vv      ADAMTS16 MUTATED ADAMTS16 WILD-TYPE
  N0                  11                 84
  N1                   6                 31
  N2+N3                3                 32
D85V8, multiclass
    clus
vv   ADAMTS16 MUTATED ADAMTS16 WILD-TYPE
  M0               17                120
  M1                3                  6
  MX                2                 20
D85V9, multiclass
     clus
vv    ADAMTS16 MUTATED ADAMTS16 WILD-TYPE
  I                 11                 77
  II                 4                 29
  III                4                 35
  IV                 3                  6
D85V10, binary
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  ADAMTS16 MUTATED      2   20
  ADAMTS16 WILD-TYPE   14  136
     clus
vv    ADAMTS16 MUTATED ADAMTS16 WILD-TYPE
  NO                 2                 14
  YES               20                136
D85V11, continuous
D85V12, continuous
D85V13, multiclass
                                             clus
vv                                            ADAMTS16 MUTATED
  CURRENT REFORMED SMOKER FOR < OR = 15 YEARS               10
  CURRENT REFORMED SMOKER FOR > 15 YEARS                     4
  CURRENT SMOKER                                             5
  LIFELONG NON-SMOKER                                        2
                                             clus
vv                                            ADAMTS16 WILD-TYPE
  CURRENT REFORMED SMOKER FOR < OR = 15 YEARS                 52
  CURRENT REFORMED SMOKER FOR > 15 YEARS                      42
  CURRENT SMOKER                                              23
  LIFELONG NON-SMOKER                                         22
D85V14, continuous

Clustering(86) Variable = OR5T2 MUTATION ANALYSIS
D86V1, survival
                 sevent
clus2              0  1
  OR5T2 MUTATED    7  1
  OR5T2 WILD-TYPE 92 49
  OR5T2 MUTATED OR5T2 WILD-TYPE 
              8             141 
  OR5T2 MUTATED OR5T2 WILD-TYPE 
              1              49 
$`OR5T2 MUTATED`
TCGA-05-4390 TCGA-05-4405 TCGA-44-6147 TCGA-50-5045 TCGA-64-5781 TCGA-67-3770 
       37.02        20.05         7.76        71.47        39.52         0.99 
TCGA-73-4666 TCGA-91-6831 
       20.28         1.28 

$`OR5T2 WILD-TYPE`
TCGA-05-4249 TCGA-05-4250 TCGA-05-4382 TCGA-05-4384 TCGA-05-4396 TCGA-05-4397 
       38.07         3.98        19.92        14.01         9.96        24.03 
TCGA-05-4398 TCGA-05-4402 TCGA-05-4415 TCGA-05-4417 TCGA-05-4418 TCGA-05-4420 
       47.05         8.02         2.96        14.93         8.98        29.95 
TCGA-05-4424 TCGA-05-4426 TCGA-05-4427 TCGA-05-4430 TCGA-05-4432 TCGA-05-4433 
       30.02        26.01        26.01        25.02        25.02        24.00 
TCGA-05-4434 TCGA-05-5420 TCGA-05-5423 TCGA-05-5425 TCGA-05-5429 TCGA-05-5715 
       15.02         1.02         4.96         2.96         0.99         2.04 
TCGA-35-3615 TCGA-35-4122 TCGA-35-4123 TCGA-35-5375 TCGA-38-4625 TCGA-38-4626 
        0.46         7.36         5.95         8.68        47.61        85.32 
TCGA-38-4627 TCGA-38-4628 TCGA-38-4629 TCGA-38-4630 TCGA-38-4631 TCGA-38-4632 
       37.71        49.02        28.37        35.28        11.64        44.61 
TCGA-38-6178 TCGA-44-2655 TCGA-44-2656 TCGA-44-2657 TCGA-44-2659 TCGA-44-2661 
        5.19        18.87        19.10        13.15        17.39         3.39 
TCGA-44-2662 TCGA-44-2665 TCGA-44-2666 TCGA-44-2668 TCGA-44-3396 TCGA-44-3398 
       15.78        13.15         3.19         8.09        10.22         8.32 
TCGA-44-3918 TCGA-44-3919 TCGA-44-4112 TCGA-44-5643 TCGA-44-5645 TCGA-44-6144 
        6.44         6.21         4.60         3.48         6.84         0.30 
TCGA-44-6145 TCGA-44-6146 TCGA-44-6148 TCGA-44-6774 TCGA-44-6775 TCGA-44-6776 
        3.35         9.93         3.12         5.42         2.70        63.72 
TCGA-44-6777 TCGA-44-6778 TCGA-44-6779 TCGA-49-4486 TCGA-49-4487 TCGA-49-4488 
       32.45        36.49        16.41        76.21        28.11        28.57 
TCGA-49-4490 TCGA-49-4494 TCGA-49-4501 TCGA-49-4505 TCGA-49-4506 TCGA-49-4507 
       12.66        35.54        46.72        14.07        32.84         8.81 
TCGA-49-4510 TCGA-49-4512 TCGA-49-4514 TCGA-49-6742 TCGA-49-6743 TCGA-49-6744 
       29.46        29.75        43.20        15.02        12.13        12.99 
TCGA-49-6745 TCGA-50-5044 TCGA-50-5049 TCGA-50-5051 TCGA-50-5055 TCGA-50-5066 
        4.93        20.48        48.82        14.96        25.81         9.76 
TCGA-50-5068 TCGA-50-5072 TCGA-50-5930 TCGA-50-5931 TCGA-50-5932 TCGA-50-5933 
       49.28         8.05         9.27         8.78        35.87        77.88 
TCGA-50-5935 TCGA-50-5936 TCGA-50-5939 TCGA-50-5941 TCGA-50-5942 TCGA-50-5944 
       21.47         8.45        15.12         9.37         4.44        12.26 
TCGA-50-5946 TCGA-50-6590 TCGA-50-6591 TCGA-50-6592 TCGA-50-6593 TCGA-50-6594 
       11.47        42.31         3.88        25.51        11.05        12.16 
TCGA-50-6595 TCGA-50-6597 TCGA-55-1592 TCGA-55-1594 TCGA-55-1595 TCGA-55-1596 
        6.21        33.37        23.05        38.73        48.62        45.17 
TCGA-55-5899 TCGA-55-6543 TCGA-55-6642 TCGA-55-6712 TCGA-64-1676 TCGA-64-1677 
        2.86         0.07        32.61         0.79        56.81        20.65 
TCGA-64-1678 TCGA-64-1680 TCGA-64-5774 TCGA-64-5775 TCGA-64-5778 TCGA-64-5779 
       39.09        37.02        83.84         0.10        30.44        16.67 
TCGA-64-5815 TCGA-67-3771 TCGA-67-3772 TCGA-67-3773 TCGA-67-3774 TCGA-67-6215 
        7.33         1.97         0.59         2.04         0.59         0.89 
TCGA-67-6216 TCGA-67-6217 TCGA-71-6725 TCGA-73-4658 TCGA-73-4659 TCGA-73-4662 
        0.69        13.87         2.01        52.57        23.38        29.95 
TCGA-73-4668 TCGA-73-4670 TCGA-73-4675 TCGA-73-4676 TCGA-73-4677 TCGA-91-6828 
       15.35         0.46         1.32         4.01         1.25         1.22 
TCGA-91-6829 TCGA-91-6835 TCGA-91-6836 
       41.33         1.15         0.36 

  OR5T2 MUTATED OR5T2 WILD-TYPE 
           0.99            0.07 
  OR5T2 MUTATED OR5T2 WILD-TYPE 
          71.47           85.32 
  OR5T2 MUTATED OR5T2 WILD-TYPE 
         20.165          13.150 
[1] "1.0 - 71.5 (20.2)" "0.1 - 85.3 (13.2)"
     TCGA-05-4249      TCGA-05-4250      TCGA-05-4382      TCGA-05-4384 
"OR5T2 WILD-TYPE" "OR5T2 WILD-TYPE" "OR5T2 WILD-TYPE" "OR5T2 WILD-TYPE" 
     TCGA-05-4390      TCGA-05-4396      TCGA-05-4397      TCGA-05-4398 
  "OR5T2 MUTATED" "OR5T2 WILD-TYPE" "OR5T2 WILD-TYPE" "OR5T2 WILD-TYPE" 
     TCGA-05-4402      TCGA-05-4405      TCGA-05-4415      TCGA-05-4417 
"OR5T2 WILD-TYPE"   "OR5T2 MUTATED" "OR5T2 WILD-TYPE" "OR5T2 WILD-TYPE" 
     TCGA-05-4418      TCGA-05-4420      TCGA-05-4424      TCGA-05-4426 
"OR5T2 WILD-TYPE" "OR5T2 WILD-TYPE" "OR5T2 WILD-TYPE" "OR5T2 WILD-TYPE" 
     TCGA-05-4427      TCGA-05-4430      TCGA-05-4432      TCGA-05-4433 
"OR5T2 WILD-TYPE" "OR5T2 WILD-TYPE" "OR5T2 WILD-TYPE" "OR5T2 WILD-TYPE" 
     TCGA-05-4434      TCGA-05-5420      TCGA-05-5423      TCGA-05-5425 
"OR5T2 WILD-TYPE" "OR5T2 WILD-TYPE" "OR5T2 WILD-TYPE" "OR5T2 WILD-TYPE" 
     TCGA-05-5429      TCGA-05-5715      TCGA-35-3615      TCGA-35-4122 
"OR5T2 WILD-TYPE" "OR5T2 WILD-TYPE" "OR5T2 WILD-TYPE" "OR5T2 WILD-TYPE" 
     TCGA-35-4123      TCGA-35-5375      TCGA-38-4625      TCGA-38-4626 
"OR5T2 WILD-TYPE" "OR5T2 WILD-TYPE" "OR5T2 WILD-TYPE" "OR5T2 WILD-TYPE" 
     TCGA-38-4627      TCGA-38-4628      TCGA-38-4629      TCGA-38-4630 
"OR5T2 WILD-TYPE" "OR5T2 WILD-TYPE" "OR5T2 WILD-TYPE" "OR5T2 WILD-TYPE" 
     TCGA-38-4631      TCGA-38-4632      TCGA-38-6178      TCGA-44-2655 
"OR5T2 WILD-TYPE" "OR5T2 WILD-TYPE" "OR5T2 WILD-TYPE" "OR5T2 WILD-TYPE" 
     TCGA-44-2656      TCGA-44-2657      TCGA-44-2659      TCGA-44-2661 
"OR5T2 WILD-TYPE" "OR5T2 WILD-TYPE" "OR5T2 WILD-TYPE" "OR5T2 WILD-TYPE" 
     TCGA-44-2662      TCGA-44-2665      TCGA-44-2666      TCGA-44-2668 
"OR5T2 WILD-TYPE" "OR5T2 WILD-TYPE" "OR5T2 WILD-TYPE" "OR5T2 WILD-TYPE" 
     TCGA-44-3396      TCGA-44-3398      TCGA-44-3918      TCGA-44-3919 
"OR5T2 WILD-TYPE" "OR5T2 WILD-TYPE" "OR5T2 WILD-TYPE" "OR5T2 WILD-TYPE" 
     TCGA-44-4112      TCGA-44-5643      TCGA-44-5645      TCGA-44-6144 
"OR5T2 WILD-TYPE" "OR5T2 WILD-TYPE" "OR5T2 WILD-TYPE" "OR5T2 WILD-TYPE" 
     TCGA-44-6145      TCGA-44-6146      TCGA-44-6147      TCGA-44-6148 
"OR5T2 WILD-TYPE" "OR5T2 WILD-TYPE"   "OR5T2 MUTATED" "OR5T2 WILD-TYPE" 
     TCGA-44-6774      TCGA-44-6775      TCGA-44-6776      TCGA-44-6777 
"OR5T2 WILD-TYPE" "OR5T2 WILD-TYPE" "OR5T2 WILD-TYPE" "OR5T2 WILD-TYPE" 
     TCGA-44-6778      TCGA-44-6779      TCGA-49-4486      TCGA-49-4487 
"OR5T2 WILD-TYPE" "OR5T2 WILD-TYPE" "OR5T2 WILD-TYPE" "OR5T2 WILD-TYPE" 
     TCGA-49-4488      TCGA-49-4490      TCGA-49-4494      TCGA-49-4501 
"OR5T2 WILD-TYPE" "OR5T2 WILD-TYPE" "OR5T2 WILD-TYPE" "OR5T2 WILD-TYPE" 
     TCGA-49-4505      TCGA-49-4506      TCGA-49-4507      TCGA-49-4510 
"OR5T2 WILD-TYPE" "OR5T2 WILD-TYPE" "OR5T2 WILD-TYPE" "OR5T2 WILD-TYPE" 
     TCGA-49-4512      TCGA-49-4514      TCGA-49-6742      TCGA-49-6743 
"OR5T2 WILD-TYPE" "OR5T2 WILD-TYPE" "OR5T2 WILD-TYPE" "OR5T2 WILD-TYPE" 
     TCGA-49-6744      TCGA-49-6745      TCGA-50-5044      TCGA-50-5045 
"OR5T2 WILD-TYPE" "OR5T2 WILD-TYPE" "OR5T2 WILD-TYPE"   "OR5T2 MUTATED" 
     TCGA-50-5049      TCGA-50-5051      TCGA-50-5055      TCGA-50-5066 
"OR5T2 WILD-TYPE" "OR5T2 WILD-TYPE" "OR5T2 WILD-TYPE" "OR5T2 WILD-TYPE" 
     TCGA-50-5068      TCGA-50-5072      TCGA-50-5930      TCGA-50-5931 
"OR5T2 WILD-TYPE" "OR5T2 WILD-TYPE" "OR5T2 WILD-TYPE" "OR5T2 WILD-TYPE" 
     TCGA-50-5932      TCGA-50-5933      TCGA-50-5935      TCGA-50-5936 
"OR5T2 WILD-TYPE" "OR5T2 WILD-TYPE" "OR5T2 WILD-TYPE" "OR5T2 WILD-TYPE" 
     TCGA-50-5939      TCGA-50-5941      TCGA-50-5942      TCGA-50-5944 
"OR5T2 WILD-TYPE" "OR5T2 WILD-TYPE" "OR5T2 WILD-TYPE" "OR5T2 WILD-TYPE" 
     TCGA-50-5946      TCGA-50-6590      TCGA-50-6591      TCGA-50-6592 
"OR5T2 WILD-TYPE" "OR5T2 WILD-TYPE" "OR5T2 WILD-TYPE" "OR5T2 WILD-TYPE" 
     TCGA-50-6593      TCGA-50-6594      TCGA-50-6595      TCGA-50-6597 
"OR5T2 WILD-TYPE" "OR5T2 WILD-TYPE" "OR5T2 WILD-TYPE" "OR5T2 WILD-TYPE" 
     TCGA-55-1592      TCGA-55-1594      TCGA-55-1595      TCGA-55-1596 
"OR5T2 WILD-TYPE" "OR5T2 WILD-TYPE" "OR5T2 WILD-TYPE" "OR5T2 WILD-TYPE" 
     TCGA-55-5899      TCGA-55-6543      TCGA-55-6642      TCGA-55-6712 
"OR5T2 WILD-TYPE" "OR5T2 WILD-TYPE" "OR5T2 WILD-TYPE" "OR5T2 WILD-TYPE" 
     TCGA-64-1676      TCGA-64-1677      TCGA-64-1678      TCGA-64-1680 
"OR5T2 WILD-TYPE" "OR5T2 WILD-TYPE" "OR5T2 WILD-TYPE" "OR5T2 WILD-TYPE" 
     TCGA-64-5774      TCGA-64-5775      TCGA-64-5778      TCGA-64-5779 
"OR5T2 WILD-TYPE" "OR5T2 WILD-TYPE" "OR5T2 WILD-TYPE" "OR5T2 WILD-TYPE" 
     TCGA-64-5781      TCGA-64-5815      TCGA-67-3770      TCGA-67-3771 
  "OR5T2 MUTATED" "OR5T2 WILD-TYPE"   "OR5T2 MUTATED" "OR5T2 WILD-TYPE" 
     TCGA-67-3772      TCGA-67-3773      TCGA-67-3774      TCGA-67-6215 
"OR5T2 WILD-TYPE" "OR5T2 WILD-TYPE" "OR5T2 WILD-TYPE" "OR5T2 WILD-TYPE" 
     TCGA-67-6216      TCGA-67-6217      TCGA-71-6725      TCGA-73-4658 
"OR5T2 WILD-TYPE" "OR5T2 WILD-TYPE" "OR5T2 WILD-TYPE" "OR5T2 WILD-TYPE" 
     TCGA-73-4659      TCGA-73-4662      TCGA-73-4666      TCGA-73-4668 
"OR5T2 WILD-TYPE" "OR5T2 WILD-TYPE"   "OR5T2 MUTATED" "OR5T2 WILD-TYPE" 
     TCGA-73-4670      TCGA-73-4675      TCGA-73-4676      TCGA-73-4677 
"OR5T2 WILD-TYPE" "OR5T2 WILD-TYPE" "OR5T2 WILD-TYPE" "OR5T2 WILD-TYPE" 
     TCGA-91-6828      TCGA-91-6829      TCGA-91-6831      TCGA-91-6835 
"OR5T2 WILD-TYPE" "OR5T2 WILD-TYPE"   "OR5T2 MUTATED" "OR5T2 WILD-TYPE" 
     TCGA-91-6836 
"OR5T2 WILD-TYPE" 
     TCGA-05-4249      TCGA-05-4250      TCGA-05-4382      TCGA-05-4384 
"OR5T2 WILD-TYPE" "OR5T2 WILD-TYPE" "OR5T2 WILD-TYPE" "OR5T2 WILD-TYPE" 
     TCGA-05-4390      TCGA-05-4396      TCGA-05-4397      TCGA-05-4398 
  "OR5T2 MUTATED" "OR5T2 WILD-TYPE" "OR5T2 WILD-TYPE" "OR5T2 WILD-TYPE" 
     TCGA-05-4402      TCGA-05-4405      TCGA-05-4415      TCGA-05-4417 
"OR5T2 WILD-TYPE"   "OR5T2 MUTATED" "OR5T2 WILD-TYPE" "OR5T2 WILD-TYPE" 
     TCGA-05-4418      TCGA-05-4420      TCGA-05-4424      TCGA-05-4426 
"OR5T2 WILD-TYPE" "OR5T2 WILD-TYPE" "OR5T2 WILD-TYPE" "OR5T2 WILD-TYPE" 
     TCGA-05-4427      TCGA-05-4430      TCGA-05-4432      TCGA-05-4433 
"OR5T2 WILD-TYPE" "OR5T2 WILD-TYPE" "OR5T2 WILD-TYPE" "OR5T2 WILD-TYPE" 
     TCGA-05-4434      TCGA-05-5420      TCGA-05-5423      TCGA-05-5425 
"OR5T2 WILD-TYPE" "OR5T2 WILD-TYPE" "OR5T2 WILD-TYPE" "OR5T2 WILD-TYPE" 
     TCGA-05-5429      TCGA-05-5715      TCGA-35-3615      TCGA-35-4122 
"OR5T2 WILD-TYPE" "OR5T2 WILD-TYPE" "OR5T2 WILD-TYPE" "OR5T2 WILD-TYPE" 
     TCGA-35-4123      TCGA-35-5375      TCGA-38-4625      TCGA-38-4626 
"OR5T2 WILD-TYPE" "OR5T2 WILD-TYPE" "OR5T2 WILD-TYPE" "OR5T2 WILD-TYPE" 
     TCGA-38-4627      TCGA-38-4628      TCGA-38-4629      TCGA-38-4630 
"OR5T2 WILD-TYPE" "OR5T2 WILD-TYPE" "OR5T2 WILD-TYPE" "OR5T2 WILD-TYPE" 
     TCGA-38-4631      TCGA-38-4632      TCGA-38-6178      TCGA-44-2655 
"OR5T2 WILD-TYPE" "OR5T2 WILD-TYPE" "OR5T2 WILD-TYPE" "OR5T2 WILD-TYPE" 
     TCGA-44-2656      TCGA-44-2657      TCGA-44-2659      TCGA-44-2661 
"OR5T2 WILD-TYPE" "OR5T2 WILD-TYPE" "OR5T2 WILD-TYPE" "OR5T2 WILD-TYPE" 
     TCGA-44-2662      TCGA-44-2665      TCGA-44-2666      TCGA-44-2668 
"OR5T2 WILD-TYPE" "OR5T2 WILD-TYPE" "OR5T2 WILD-TYPE" "OR5T2 WILD-TYPE" 
     TCGA-44-3396      TCGA-44-3398      TCGA-44-3918      TCGA-44-3919 
"OR5T2 WILD-TYPE" "OR5T2 WILD-TYPE" "OR5T2 WILD-TYPE" "OR5T2 WILD-TYPE" 
     TCGA-44-4112      TCGA-44-5643      TCGA-44-5645      TCGA-44-6144 
"OR5T2 WILD-TYPE" "OR5T2 WILD-TYPE" "OR5T2 WILD-TYPE" "OR5T2 WILD-TYPE" 
     TCGA-44-6145      TCGA-44-6146      TCGA-44-6147      TCGA-44-6148 
"OR5T2 WILD-TYPE" "OR5T2 WILD-TYPE"   "OR5T2 MUTATED" "OR5T2 WILD-TYPE" 
     TCGA-44-6774      TCGA-44-6775      TCGA-44-6776      TCGA-44-6777 
"OR5T2 WILD-TYPE" "OR5T2 WILD-TYPE" "OR5T2 WILD-TYPE" "OR5T2 WILD-TYPE" 
     TCGA-44-6778      TCGA-44-6779      TCGA-49-4486      TCGA-49-4487 
"OR5T2 WILD-TYPE" "OR5T2 WILD-TYPE" "OR5T2 WILD-TYPE" "OR5T2 WILD-TYPE" 
     TCGA-49-4488      TCGA-49-4490      TCGA-49-4494      TCGA-49-4501 
"OR5T2 WILD-TYPE" "OR5T2 WILD-TYPE" "OR5T2 WILD-TYPE" "OR5T2 WILD-TYPE" 
     TCGA-49-4505      TCGA-49-4506      TCGA-49-4507      TCGA-49-4510 
"OR5T2 WILD-TYPE" "OR5T2 WILD-TYPE" "OR5T2 WILD-TYPE" "OR5T2 WILD-TYPE" 
     TCGA-49-4512      TCGA-49-4514      TCGA-49-6742      TCGA-49-6743 
"OR5T2 WILD-TYPE" "OR5T2 WILD-TYPE" "OR5T2 WILD-TYPE" "OR5T2 WILD-TYPE" 
     TCGA-49-6744      TCGA-49-6745      TCGA-50-5044      TCGA-50-5045 
"OR5T2 WILD-TYPE" "OR5T2 WILD-TYPE" "OR5T2 WILD-TYPE"   "OR5T2 MUTATED" 
     TCGA-50-5049      TCGA-50-5051      TCGA-50-5055      TCGA-50-5066 
"OR5T2 WILD-TYPE" "OR5T2 WILD-TYPE" "OR5T2 WILD-TYPE" "OR5T2 WILD-TYPE" 
     TCGA-50-5068      TCGA-50-5072      TCGA-50-5930      TCGA-50-5931 
"OR5T2 WILD-TYPE" "OR5T2 WILD-TYPE" "OR5T2 WILD-TYPE" "OR5T2 WILD-TYPE" 
     TCGA-50-5932      TCGA-50-5933      TCGA-50-5935      TCGA-50-5936 
"OR5T2 WILD-TYPE" "OR5T2 WILD-TYPE" "OR5T2 WILD-TYPE" "OR5T2 WILD-TYPE" 
     TCGA-50-5939      TCGA-50-5941      TCGA-50-5942      TCGA-50-5944 
"OR5T2 WILD-TYPE" "OR5T2 WILD-TYPE" "OR5T2 WILD-TYPE" "OR5T2 WILD-TYPE" 
     TCGA-50-5946      TCGA-50-6590      TCGA-50-6591      TCGA-50-6592 
"OR5T2 WILD-TYPE" "OR5T2 WILD-TYPE" "OR5T2 WILD-TYPE" "OR5T2 WILD-TYPE" 
     TCGA-50-6593      TCGA-50-6594      TCGA-50-6595      TCGA-50-6597 
"OR5T2 WILD-TYPE" "OR5T2 WILD-TYPE" "OR5T2 WILD-TYPE" "OR5T2 WILD-TYPE" 
     TCGA-55-1592      TCGA-55-1594      TCGA-55-1595      TCGA-55-1596 
"OR5T2 WILD-TYPE" "OR5T2 WILD-TYPE" "OR5T2 WILD-TYPE" "OR5T2 WILD-TYPE" 
     TCGA-55-5899      TCGA-55-6543      TCGA-55-6642      TCGA-55-6712 
"OR5T2 WILD-TYPE" "OR5T2 WILD-TYPE" "OR5T2 WILD-TYPE" "OR5T2 WILD-TYPE" 
     TCGA-64-1676      TCGA-64-1677      TCGA-64-1678      TCGA-64-1680 
"OR5T2 WILD-TYPE" "OR5T2 WILD-TYPE" "OR5T2 WILD-TYPE" "OR5T2 WILD-TYPE" 
     TCGA-64-5774      TCGA-64-5775      TCGA-64-5778      TCGA-64-5779 
"OR5T2 WILD-TYPE" "OR5T2 WILD-TYPE" "OR5T2 WILD-TYPE" "OR5T2 WILD-TYPE" 
     TCGA-64-5781      TCGA-64-5815      TCGA-67-3770      TCGA-67-3771 
  "OR5T2 MUTATED" "OR5T2 WILD-TYPE"   "OR5T2 MUTATED" "OR5T2 WILD-TYPE" 
     TCGA-67-3772      TCGA-67-3773      TCGA-67-3774      TCGA-67-6215 
"OR5T2 WILD-TYPE" "OR5T2 WILD-TYPE" "OR5T2 WILD-TYPE" "OR5T2 WILD-TYPE" 
     TCGA-67-6216      TCGA-67-6217      TCGA-71-6725      TCGA-73-4658 
"OR5T2 WILD-TYPE" "OR5T2 WILD-TYPE" "OR5T2 WILD-TYPE" "OR5T2 WILD-TYPE" 
     TCGA-73-4659      TCGA-73-4662      TCGA-73-4666      TCGA-73-4668 
"OR5T2 WILD-TYPE" "OR5T2 WILD-TYPE"   "OR5T2 MUTATED" "OR5T2 WILD-TYPE" 
     TCGA-73-4670      TCGA-73-4675      TCGA-73-4676      TCGA-73-4677 
"OR5T2 WILD-TYPE" "OR5T2 WILD-TYPE" "OR5T2 WILD-TYPE" "OR5T2 WILD-TYPE" 
     TCGA-91-6828      TCGA-91-6829      TCGA-91-6831      TCGA-91-6835 
"OR5T2 WILD-TYPE" "OR5T2 WILD-TYPE"   "OR5T2 MUTATED" "OR5T2 WILD-TYPE" 
     TCGA-91-6836 
"OR5T2 WILD-TYPE" 
     TCGA-05-4249      TCGA-05-4250      TCGA-05-4382      TCGA-05-4384 
"OR5T2 WILD-TYPE" "OR5T2 WILD-TYPE" "OR5T2 WILD-TYPE" "OR5T2 WILD-TYPE" 
     TCGA-05-4390      TCGA-05-4396      TCGA-05-4397      TCGA-05-4398 
  "OR5T2 MUTATED" "OR5T2 WILD-TYPE" "OR5T2 WILD-TYPE" "OR5T2 WILD-TYPE" 
     TCGA-05-4402      TCGA-05-4405      TCGA-05-4415      TCGA-05-4417 
"OR5T2 WILD-TYPE"   "OR5T2 MUTATED" "OR5T2 WILD-TYPE" "OR5T2 WILD-TYPE" 
     TCGA-05-4418      TCGA-05-4420      TCGA-05-4424      TCGA-05-4426 
"OR5T2 WILD-TYPE" "OR5T2 WILD-TYPE" "OR5T2 WILD-TYPE" "OR5T2 WILD-TYPE" 
     TCGA-05-4427      TCGA-05-4430      TCGA-05-4432      TCGA-05-4433 
"OR5T2 WILD-TYPE" "OR5T2 WILD-TYPE" "OR5T2 WILD-TYPE" "OR5T2 WILD-TYPE" 
     TCGA-05-4434      TCGA-05-5420      TCGA-05-5423      TCGA-05-5425 
"OR5T2 WILD-TYPE" "OR5T2 WILD-TYPE" "OR5T2 WILD-TYPE" "OR5T2 WILD-TYPE" 
     TCGA-05-5429      TCGA-05-5715      TCGA-35-3615      TCGA-35-4122 
"OR5T2 WILD-TYPE" "OR5T2 WILD-TYPE" "OR5T2 WILD-TYPE" "OR5T2 WILD-TYPE" 
     TCGA-35-4123      TCGA-35-5375      TCGA-38-4625      TCGA-38-4626 
"OR5T2 WILD-TYPE" "OR5T2 WILD-TYPE" "OR5T2 WILD-TYPE" "OR5T2 WILD-TYPE" 
     TCGA-38-4627      TCGA-38-4628      TCGA-38-4629      TCGA-38-4630 
"OR5T2 WILD-TYPE" "OR5T2 WILD-TYPE" "OR5T2 WILD-TYPE" "OR5T2 WILD-TYPE" 
     TCGA-38-4631      TCGA-38-4632      TCGA-38-6178      TCGA-44-2655 
"OR5T2 WILD-TYPE" "OR5T2 WILD-TYPE" "OR5T2 WILD-TYPE" "OR5T2 WILD-TYPE" 
     TCGA-44-2656      TCGA-44-2657      TCGA-44-2659      TCGA-44-2661 
"OR5T2 WILD-TYPE" "OR5T2 WILD-TYPE" "OR5T2 WILD-TYPE" "OR5T2 WILD-TYPE" 
     TCGA-44-2662      TCGA-44-2665      TCGA-44-2666      TCGA-44-2668 
"OR5T2 WILD-TYPE" "OR5T2 WILD-TYPE" "OR5T2 WILD-TYPE" "OR5T2 WILD-TYPE" 
     TCGA-44-3396      TCGA-44-3398      TCGA-44-3918      TCGA-44-3919 
"OR5T2 WILD-TYPE" "OR5T2 WILD-TYPE" "OR5T2 WILD-TYPE" "OR5T2 WILD-TYPE" 
     TCGA-44-4112      TCGA-44-5643      TCGA-44-5645      TCGA-44-6144 
"OR5T2 WILD-TYPE" "OR5T2 WILD-TYPE" "OR5T2 WILD-TYPE" "OR5T2 WILD-TYPE" 
     TCGA-44-6145      TCGA-44-6146      TCGA-44-6147      TCGA-44-6148 
"OR5T2 WILD-TYPE" "OR5T2 WILD-TYPE"   "OR5T2 MUTATED" "OR5T2 WILD-TYPE" 
     TCGA-44-6774      TCGA-44-6775      TCGA-44-6776      TCGA-44-6777 
"OR5T2 WILD-TYPE" "OR5T2 WILD-TYPE" "OR5T2 WILD-TYPE" "OR5T2 WILD-TYPE" 
     TCGA-44-6778      TCGA-44-6779      TCGA-49-4486      TCGA-49-4487 
"OR5T2 WILD-TYPE" "OR5T2 WILD-TYPE" "OR5T2 WILD-TYPE" "OR5T2 WILD-TYPE" 
     TCGA-49-4488      TCGA-49-4490      TCGA-49-4494      TCGA-49-4501 
"OR5T2 WILD-TYPE" "OR5T2 WILD-TYPE" "OR5T2 WILD-TYPE" "OR5T2 WILD-TYPE" 
     TCGA-49-4505      TCGA-49-4506      TCGA-49-4507      TCGA-49-4510 
"OR5T2 WILD-TYPE" "OR5T2 WILD-TYPE" "OR5T2 WILD-TYPE" "OR5T2 WILD-TYPE" 
     TCGA-49-4512      TCGA-49-4514      TCGA-49-6742      TCGA-49-6743 
"OR5T2 WILD-TYPE" "OR5T2 WILD-TYPE" "OR5T2 WILD-TYPE" "OR5T2 WILD-TYPE" 
     TCGA-49-6744      TCGA-49-6745      TCGA-50-5044      TCGA-50-5045 
"OR5T2 WILD-TYPE" "OR5T2 WILD-TYPE" "OR5T2 WILD-TYPE"   "OR5T2 MUTATED" 
     TCGA-50-5049      TCGA-50-5051      TCGA-50-5055      TCGA-50-5066 
"OR5T2 WILD-TYPE" "OR5T2 WILD-TYPE" "OR5T2 WILD-TYPE" "OR5T2 WILD-TYPE" 
     TCGA-50-5068      TCGA-50-5072      TCGA-50-5930      TCGA-50-5931 
"OR5T2 WILD-TYPE" "OR5T2 WILD-TYPE" "OR5T2 WILD-TYPE" "OR5T2 WILD-TYPE" 
     TCGA-50-5932      TCGA-50-5933      TCGA-50-5935      TCGA-50-5936 
"OR5T2 WILD-TYPE" "OR5T2 WILD-TYPE" "OR5T2 WILD-TYPE" "OR5T2 WILD-TYPE" 
     TCGA-50-5939      TCGA-50-5941      TCGA-50-5942      TCGA-50-5944 
"OR5T2 WILD-TYPE" "OR5T2 WILD-TYPE" "OR5T2 WILD-TYPE" "OR5T2 WILD-TYPE" 
     TCGA-50-5946      TCGA-50-6590      TCGA-50-6591      TCGA-50-6592 
"OR5T2 WILD-TYPE" "OR5T2 WILD-TYPE" "OR5T2 WILD-TYPE" "OR5T2 WILD-TYPE" 
     TCGA-50-6593      TCGA-50-6594      TCGA-50-6595      TCGA-50-6597 
"OR5T2 WILD-TYPE" "OR5T2 WILD-TYPE" "OR5T2 WILD-TYPE" "OR5T2 WILD-TYPE" 
     TCGA-55-1592      TCGA-55-1594      TCGA-55-1595      TCGA-55-1596 
"OR5T2 WILD-TYPE" "OR5T2 WILD-TYPE" "OR5T2 WILD-TYPE" "OR5T2 WILD-TYPE" 
     TCGA-55-5899      TCGA-55-6543      TCGA-55-6642      TCGA-55-6712 
"OR5T2 WILD-TYPE" "OR5T2 WILD-TYPE" "OR5T2 WILD-TYPE" "OR5T2 WILD-TYPE" 
     TCGA-64-1676      TCGA-64-1677      TCGA-64-1678      TCGA-64-1680 
"OR5T2 WILD-TYPE" "OR5T2 WILD-TYPE" "OR5T2 WILD-TYPE" "OR5T2 WILD-TYPE" 
     TCGA-64-5774      TCGA-64-5775      TCGA-64-5778      TCGA-64-5779 
"OR5T2 WILD-TYPE" "OR5T2 WILD-TYPE" "OR5T2 WILD-TYPE" "OR5T2 WILD-TYPE" 
     TCGA-64-5781      TCGA-64-5815      TCGA-67-3770      TCGA-67-3771 
  "OR5T2 MUTATED" "OR5T2 WILD-TYPE"   "OR5T2 MUTATED" "OR5T2 WILD-TYPE" 
     TCGA-67-3772      TCGA-67-3773      TCGA-67-3774      TCGA-67-6215 
"OR5T2 WILD-TYPE" "OR5T2 WILD-TYPE" "OR5T2 WILD-TYPE" "OR5T2 WILD-TYPE" 
     TCGA-67-6216      TCGA-67-6217      TCGA-71-6725      TCGA-73-4658 
"OR5T2 WILD-TYPE" "OR5T2 WILD-TYPE" "OR5T2 WILD-TYPE" "OR5T2 WILD-TYPE" 
     TCGA-73-4659      TCGA-73-4662      TCGA-73-4666      TCGA-73-4668 
"OR5T2 WILD-TYPE" "OR5T2 WILD-TYPE"   "OR5T2 MUTATED" "OR5T2 WILD-TYPE" 
     TCGA-73-4670      TCGA-73-4675      TCGA-73-4676      TCGA-73-4677 
"OR5T2 WILD-TYPE" "OR5T2 WILD-TYPE" "OR5T2 WILD-TYPE" "OR5T2 WILD-TYPE" 
     TCGA-91-6828      TCGA-91-6829      TCGA-91-6831      TCGA-91-6835 
"OR5T2 WILD-TYPE" "OR5T2 WILD-TYPE"   "OR5T2 MUTATED" "OR5T2 WILD-TYPE" 
     TCGA-91-6836 
"OR5T2 WILD-TYPE" 
[1] "hr=" "3.6"
D86V2, continuous
D86V3, binary
[1] "tbl2"
                 cls
clus              [,1] [,2]
  OR5T2 MUTATED      7    1
  OR5T2 WILD-TYPE   86   78
        clus
vv       OR5T2 MUTATED OR5T2 WILD-TYPE
  FEMALE             7              86
  MALE               1              78
D86V4, continuous
[1] "Remove cluster labels:" "OR5T2 MUTATED"         
clus
  OR5T2 MUTATED OR5T2 WILD-TYPE 
              1              11 
     TCGA-35-4122      TCGA-35-4123      TCGA-35-5375      TCGA-64-1677 
"OR5T2 WILD-TYPE" "OR5T2 WILD-TYPE" "OR5T2 WILD-TYPE" "OR5T2 WILD-TYPE" 
     TCGA-64-5778      TCGA-71-6725      TCGA-73-4659      TCGA-73-4662 
"OR5T2 WILD-TYPE" "OR5T2 WILD-TYPE" "OR5T2 WILD-TYPE" "OR5T2 WILD-TYPE" 
     TCGA-73-4668      TCGA-73-4676      TCGA-75-5122 
"OR5T2 WILD-TYPE" "OR5T2 WILD-TYPE" "OR5T2 WILD-TYPE" 
D86V5, multiclass
D86V6, multiclass
    clus
vv   OR5T2 MUTATED OR5T2 WILD-TYPE
  T1             3              38
  T2             5             103
  T3             0              14
  T4             0               8
D86V7, multiclass
       clus
vv      OR5T2 MUTATED OR5T2 WILD-TYPE
  N0                6              89
  N1                1              36
  N2+N3             0              35
D86V8, multiclass
    clus
vv   OR5T2 MUTATED OR5T2 WILD-TYPE
  M0             6             131
  M1             1               8
  MX             1              21
D86V9, multiclass
     clus
vv    OR5T2 MUTATED OR5T2 WILD-TYPE
  I               7              81
  II              0              33
  III             0              39
  IV              1               8
D86V10, binary
[1] "tbl2"
                 cls
clus              [,1] [,2]
  OR5T2 MUTATED      2    6
  OR5T2 WILD-TYPE   14  150
     clus
vv    OR5T2 MUTATED OR5T2 WILD-TYPE
  NO              2              14
  YES             6             150
D86V11, continuous
D86V12, continuous
D86V13, multiclass
                                             clus
vv                                            OR5T2 MUTATED OR5T2 WILD-TYPE
  CURRENT REFORMED SMOKER FOR < OR = 15 YEARS             4              58
  CURRENT REFORMED SMOKER FOR > 15 YEARS                  2              44
  CURRENT SMOKER                                          1              27
  LIFELONG NON-SMOKER                                     0              24
D86V14, continuous

Clustering(87) Variable = SEMA3A MUTATION ANALYSIS
D87V1, survival
                  sevent
clus2               0  1
  SEMA3A MUTATED    6  3
  SEMA3A WILD-TYPE 93 47
  SEMA3A MUTATED SEMA3A WILD-TYPE 
               9              140 
  SEMA3A MUTATED SEMA3A WILD-TYPE 
               3               47 
$`SEMA3A MUTATED`
TCGA-05-4382 TCGA-05-4396 TCGA-05-4418 TCGA-44-2656 TCGA-44-6145 TCGA-49-6743 
       19.92         9.96         8.98        19.10         3.35        12.13 
TCGA-49-6745 TCGA-50-6594 TCGA-64-5781 
        4.93        12.16        39.52 

$`SEMA3A WILD-TYPE`
TCGA-05-4249 TCGA-05-4250 TCGA-05-4384 TCGA-05-4390 TCGA-05-4397 TCGA-05-4398 
       38.07         3.98        14.01        37.02        24.03        47.05 
TCGA-05-4402 TCGA-05-4405 TCGA-05-4415 TCGA-05-4417 TCGA-05-4420 TCGA-05-4424 
        8.02        20.05         2.96        14.93        29.95        30.02 
TCGA-05-4426 TCGA-05-4427 TCGA-05-4430 TCGA-05-4432 TCGA-05-4433 TCGA-05-4434 
       26.01        26.01        25.02        25.02        24.00        15.02 
TCGA-05-5420 TCGA-05-5423 TCGA-05-5425 TCGA-05-5429 TCGA-05-5715 TCGA-35-3615 
        1.02         4.96         2.96         0.99         2.04         0.46 
TCGA-35-4122 TCGA-35-4123 TCGA-35-5375 TCGA-38-4625 TCGA-38-4626 TCGA-38-4627 
        7.36         5.95         8.68        47.61        85.32        37.71 
TCGA-38-4628 TCGA-38-4629 TCGA-38-4630 TCGA-38-4631 TCGA-38-4632 TCGA-38-6178 
       49.02        28.37        35.28        11.64        44.61         5.19 
TCGA-44-2655 TCGA-44-2657 TCGA-44-2659 TCGA-44-2661 TCGA-44-2662 TCGA-44-2665 
       18.87        13.15        17.39         3.39        15.78        13.15 
TCGA-44-2666 TCGA-44-2668 TCGA-44-3396 TCGA-44-3398 TCGA-44-3918 TCGA-44-3919 
        3.19         8.09        10.22         8.32         6.44         6.21 
TCGA-44-4112 TCGA-44-5643 TCGA-44-5645 TCGA-44-6144 TCGA-44-6146 TCGA-44-6147 
        4.60         3.48         6.84         0.30         9.93         7.76 
TCGA-44-6148 TCGA-44-6774 TCGA-44-6775 TCGA-44-6776 TCGA-44-6777 TCGA-44-6778 
        3.12         5.42         2.70        63.72        32.45        36.49 
TCGA-44-6779 TCGA-49-4486 TCGA-49-4487 TCGA-49-4488 TCGA-49-4490 TCGA-49-4494 
       16.41        76.21        28.11        28.57        12.66        35.54 
TCGA-49-4501 TCGA-49-4505 TCGA-49-4506 TCGA-49-4507 TCGA-49-4510 TCGA-49-4512 
       46.72        14.07        32.84         8.81        29.46        29.75 
TCGA-49-4514 TCGA-49-6742 TCGA-49-6744 TCGA-50-5044 TCGA-50-5045 TCGA-50-5049 
       43.20        15.02        12.99        20.48        71.47        48.82 
TCGA-50-5051 TCGA-50-5055 TCGA-50-5066 TCGA-50-5068 TCGA-50-5072 TCGA-50-5930 
       14.96        25.81         9.76        49.28         8.05         9.27 
TCGA-50-5931 TCGA-50-5932 TCGA-50-5933 TCGA-50-5935 TCGA-50-5936 TCGA-50-5939 
        8.78        35.87        77.88        21.47         8.45        15.12 
TCGA-50-5941 TCGA-50-5942 TCGA-50-5944 TCGA-50-5946 TCGA-50-6590 TCGA-50-6591 
        9.37         4.44        12.26        11.47        42.31         3.88 
TCGA-50-6592 TCGA-50-6593 TCGA-50-6595 TCGA-50-6597 TCGA-55-1592 TCGA-55-1594 
       25.51        11.05         6.21        33.37        23.05        38.73 
TCGA-55-1595 TCGA-55-1596 TCGA-55-5899 TCGA-55-6543 TCGA-55-6642 TCGA-55-6712 
       48.62        45.17         2.86         0.07        32.61         0.79 
TCGA-64-1676 TCGA-64-1677 TCGA-64-1678 TCGA-64-1680 TCGA-64-5774 TCGA-64-5775 
       56.81        20.65        39.09        37.02        83.84         0.10 
TCGA-64-5778 TCGA-64-5779 TCGA-64-5815 TCGA-67-3770 TCGA-67-3771 TCGA-67-3772 
       30.44        16.67         7.33         0.99         1.97         0.59 
TCGA-67-3773 TCGA-67-3774 TCGA-67-6215 TCGA-67-6216 TCGA-67-6217 TCGA-71-6725 
        2.04         0.59         0.89         0.69        13.87         2.01 
TCGA-73-4658 TCGA-73-4659 TCGA-73-4662 TCGA-73-4666 TCGA-73-4668 TCGA-73-4670 
       52.57        23.38        29.95        20.28        15.35         0.46 
TCGA-73-4675 TCGA-73-4676 TCGA-73-4677 TCGA-91-6828 TCGA-91-6829 TCGA-91-6831 
        1.32         4.01         1.25         1.22        41.33         1.28 
TCGA-91-6835 TCGA-91-6836 
        1.15         0.36 

  SEMA3A MUTATED SEMA3A WILD-TYPE 
            3.35             0.07 
  SEMA3A MUTATED SEMA3A WILD-TYPE 
           39.52            85.32 
  SEMA3A MUTATED SEMA3A WILD-TYPE 
           12.13            14.04 
[1] "3.4 - 39.5 (12.1)" "0.1 - 85.3 (14.0)"
      TCGA-05-4249       TCGA-05-4250       TCGA-05-4382       TCGA-05-4384 
"SEMA3A WILD-TYPE" "SEMA3A WILD-TYPE"   "SEMA3A MUTATED" "SEMA3A WILD-TYPE" 
      TCGA-05-4390       TCGA-05-4396       TCGA-05-4397       TCGA-05-4398 
"SEMA3A WILD-TYPE"   "SEMA3A MUTATED" "SEMA3A WILD-TYPE" "SEMA3A WILD-TYPE" 
      TCGA-05-4402       TCGA-05-4405       TCGA-05-4415       TCGA-05-4417 
"SEMA3A WILD-TYPE" "SEMA3A WILD-TYPE" "SEMA3A WILD-TYPE" "SEMA3A WILD-TYPE" 
      TCGA-05-4418       TCGA-05-4420       TCGA-05-4424       TCGA-05-4426 
  "SEMA3A MUTATED" "SEMA3A WILD-TYPE" "SEMA3A WILD-TYPE" "SEMA3A WILD-TYPE" 
      TCGA-05-4427       TCGA-05-4430       TCGA-05-4432       TCGA-05-4433 
"SEMA3A WILD-TYPE" "SEMA3A WILD-TYPE" "SEMA3A WILD-TYPE" "SEMA3A WILD-TYPE" 
      TCGA-05-4434       TCGA-05-5420       TCGA-05-5423       TCGA-05-5425 
"SEMA3A WILD-TYPE" "SEMA3A WILD-TYPE" "SEMA3A WILD-TYPE" "SEMA3A WILD-TYPE" 
      TCGA-05-5429       TCGA-05-5715       TCGA-35-3615       TCGA-35-4122 
"SEMA3A WILD-TYPE" "SEMA3A WILD-TYPE" "SEMA3A WILD-TYPE" "SEMA3A WILD-TYPE" 
      TCGA-35-4123       TCGA-35-5375       TCGA-38-4625       TCGA-38-4626 
"SEMA3A WILD-TYPE" "SEMA3A WILD-TYPE" "SEMA3A WILD-TYPE" "SEMA3A WILD-TYPE" 
      TCGA-38-4627       TCGA-38-4628       TCGA-38-4629       TCGA-38-4630 
"SEMA3A WILD-TYPE" "SEMA3A WILD-TYPE" "SEMA3A WILD-TYPE" "SEMA3A WILD-TYPE" 
      TCGA-38-4631       TCGA-38-4632       TCGA-38-6178       TCGA-44-2655 
"SEMA3A WILD-TYPE" "SEMA3A WILD-TYPE" "SEMA3A WILD-TYPE" "SEMA3A WILD-TYPE" 
      TCGA-44-2656       TCGA-44-2657       TCGA-44-2659       TCGA-44-2661 
  "SEMA3A MUTATED" "SEMA3A WILD-TYPE" "SEMA3A WILD-TYPE" "SEMA3A WILD-TYPE" 
      TCGA-44-2662       TCGA-44-2665       TCGA-44-2666       TCGA-44-2668 
"SEMA3A WILD-TYPE" "SEMA3A WILD-TYPE" "SEMA3A WILD-TYPE" "SEMA3A WILD-TYPE" 
      TCGA-44-3396       TCGA-44-3398       TCGA-44-3918       TCGA-44-3919 
"SEMA3A WILD-TYPE" "SEMA3A WILD-TYPE" "SEMA3A WILD-TYPE" "SEMA3A WILD-TYPE" 
      TCGA-44-4112       TCGA-44-5643       TCGA-44-5645       TCGA-44-6144 
"SEMA3A WILD-TYPE" "SEMA3A WILD-TYPE" "SEMA3A WILD-TYPE" "SEMA3A WILD-TYPE" 
      TCGA-44-6145       TCGA-44-6146       TCGA-44-6147       TCGA-44-6148 
  "SEMA3A MUTATED" "SEMA3A WILD-TYPE" "SEMA3A WILD-TYPE" "SEMA3A WILD-TYPE" 
      TCGA-44-6774       TCGA-44-6775       TCGA-44-6776       TCGA-44-6777 
"SEMA3A WILD-TYPE" "SEMA3A WILD-TYPE" "SEMA3A WILD-TYPE" "SEMA3A WILD-TYPE" 
      TCGA-44-6778       TCGA-44-6779       TCGA-49-4486       TCGA-49-4487 
"SEMA3A WILD-TYPE" "SEMA3A WILD-TYPE" "SEMA3A WILD-TYPE" "SEMA3A WILD-TYPE" 
      TCGA-49-4488       TCGA-49-4490       TCGA-49-4494       TCGA-49-4501 
"SEMA3A WILD-TYPE" "SEMA3A WILD-TYPE" "SEMA3A WILD-TYPE" "SEMA3A WILD-TYPE" 
      TCGA-49-4505       TCGA-49-4506       TCGA-49-4507       TCGA-49-4510 
"SEMA3A WILD-TYPE" "SEMA3A WILD-TYPE" "SEMA3A WILD-TYPE" "SEMA3A WILD-TYPE" 
      TCGA-49-4512       TCGA-49-4514       TCGA-49-6742       TCGA-49-6743 
"SEMA3A WILD-TYPE" "SEMA3A WILD-TYPE" "SEMA3A WILD-TYPE"   "SEMA3A MUTATED" 
      TCGA-49-6744       TCGA-49-6745       TCGA-50-5044       TCGA-50-5045 
"SEMA3A WILD-TYPE"   "SEMA3A MUTATED" "SEMA3A WILD-TYPE" "SEMA3A WILD-TYPE" 
      TCGA-50-5049       TCGA-50-5051       TCGA-50-5055       TCGA-50-5066 
"SEMA3A WILD-TYPE" "SEMA3A WILD-TYPE" "SEMA3A WILD-TYPE" "SEMA3A WILD-TYPE" 
      TCGA-50-5068       TCGA-50-5072       TCGA-50-5930       TCGA-50-5931 
"SEMA3A WILD-TYPE" "SEMA3A WILD-TYPE" "SEMA3A WILD-TYPE" "SEMA3A WILD-TYPE" 
      TCGA-50-5932       TCGA-50-5933       TCGA-50-5935       TCGA-50-5936 
"SEMA3A WILD-TYPE" "SEMA3A WILD-TYPE" "SEMA3A WILD-TYPE" "SEMA3A WILD-TYPE" 
      TCGA-50-5939       TCGA-50-5941       TCGA-50-5942       TCGA-50-5944 
"SEMA3A WILD-TYPE" "SEMA3A WILD-TYPE" "SEMA3A WILD-TYPE" "SEMA3A WILD-TYPE" 
      TCGA-50-5946       TCGA-50-6590       TCGA-50-6591       TCGA-50-6592 
"SEMA3A WILD-TYPE" "SEMA3A WILD-TYPE" "SEMA3A WILD-TYPE" "SEMA3A WILD-TYPE" 
      TCGA-50-6593       TCGA-50-6594       TCGA-50-6595       TCGA-50-6597 
"SEMA3A WILD-TYPE"   "SEMA3A MUTATED" "SEMA3A WILD-TYPE" "SEMA3A WILD-TYPE" 
      TCGA-55-1592       TCGA-55-1594       TCGA-55-1595       TCGA-55-1596 
"SEMA3A WILD-TYPE" "SEMA3A WILD-TYPE" "SEMA3A WILD-TYPE" "SEMA3A WILD-TYPE" 
      TCGA-55-5899       TCGA-55-6543       TCGA-55-6642       TCGA-55-6712 
"SEMA3A WILD-TYPE" "SEMA3A WILD-TYPE" "SEMA3A WILD-TYPE" "SEMA3A WILD-TYPE" 
      TCGA-64-1676       TCGA-64-1677       TCGA-64-1678       TCGA-64-1680 
"SEMA3A WILD-TYPE" "SEMA3A WILD-TYPE" "SEMA3A WILD-TYPE" "SEMA3A WILD-TYPE" 
      TCGA-64-5774       TCGA-64-5775       TCGA-64-5778       TCGA-64-5779 
"SEMA3A WILD-TYPE" "SEMA3A WILD-TYPE" "SEMA3A WILD-TYPE" "SEMA3A WILD-TYPE" 
      TCGA-64-5781       TCGA-64-5815       TCGA-67-3770       TCGA-67-3771 
  "SEMA3A MUTATED" "SEMA3A WILD-TYPE" "SEMA3A WILD-TYPE" "SEMA3A WILD-TYPE" 
      TCGA-67-3772       TCGA-67-3773       TCGA-67-3774       TCGA-67-6215 
"SEMA3A WILD-TYPE" "SEMA3A WILD-TYPE" "SEMA3A WILD-TYPE" "SEMA3A WILD-TYPE" 
      TCGA-67-6216       TCGA-67-6217       TCGA-71-6725       TCGA-73-4658 
"SEMA3A WILD-TYPE" "SEMA3A WILD-TYPE" "SEMA3A WILD-TYPE" "SEMA3A WILD-TYPE" 
      TCGA-73-4659       TCGA-73-4662       TCGA-73-4666       TCGA-73-4668 
"SEMA3A WILD-TYPE" "SEMA3A WILD-TYPE" "SEMA3A WILD-TYPE" "SEMA3A WILD-TYPE" 
      TCGA-73-4670       TCGA-73-4675       TCGA-73-4676       TCGA-73-4677 
"SEMA3A WILD-TYPE" "SEMA3A WILD-TYPE" "SEMA3A WILD-TYPE" "SEMA3A WILD-TYPE" 
      TCGA-91-6828       TCGA-91-6829       TCGA-91-6831       TCGA-91-6835 
"SEMA3A WILD-TYPE" "SEMA3A WILD-TYPE" "SEMA3A WILD-TYPE" "SEMA3A WILD-TYPE" 
      TCGA-91-6836 
"SEMA3A WILD-TYPE" 
      TCGA-05-4249       TCGA-05-4250       TCGA-05-4382       TCGA-05-4384 
"SEMA3A WILD-TYPE" "SEMA3A WILD-TYPE"   "SEMA3A MUTATED" "SEMA3A WILD-TYPE" 
      TCGA-05-4390       TCGA-05-4396       TCGA-05-4397       TCGA-05-4398 
"SEMA3A WILD-TYPE"   "SEMA3A MUTATED" "SEMA3A WILD-TYPE" "SEMA3A WILD-TYPE" 
      TCGA-05-4402       TCGA-05-4405       TCGA-05-4415       TCGA-05-4417 
"SEMA3A WILD-TYPE" "SEMA3A WILD-TYPE" "SEMA3A WILD-TYPE" "SEMA3A WILD-TYPE" 
      TCGA-05-4418       TCGA-05-4420       TCGA-05-4424       TCGA-05-4426 
  "SEMA3A MUTATED" "SEMA3A WILD-TYPE" "SEMA3A WILD-TYPE" "SEMA3A WILD-TYPE" 
      TCGA-05-4427       TCGA-05-4430       TCGA-05-4432       TCGA-05-4433 
"SEMA3A WILD-TYPE" "SEMA3A WILD-TYPE" "SEMA3A WILD-TYPE" "SEMA3A WILD-TYPE" 
      TCGA-05-4434       TCGA-05-5420       TCGA-05-5423       TCGA-05-5425 
"SEMA3A WILD-TYPE" "SEMA3A WILD-TYPE" "SEMA3A WILD-TYPE" "SEMA3A WILD-TYPE" 
      TCGA-05-5429       TCGA-05-5715       TCGA-35-3615       TCGA-35-4122 
"SEMA3A WILD-TYPE" "SEMA3A WILD-TYPE" "SEMA3A WILD-TYPE" "SEMA3A WILD-TYPE" 
      TCGA-35-4123       TCGA-35-5375       TCGA-38-4625       TCGA-38-4626 
"SEMA3A WILD-TYPE" "SEMA3A WILD-TYPE" "SEMA3A WILD-TYPE" "SEMA3A WILD-TYPE" 
      TCGA-38-4627       TCGA-38-4628       TCGA-38-4629       TCGA-38-4630 
"SEMA3A WILD-TYPE" "SEMA3A WILD-TYPE" "SEMA3A WILD-TYPE" "SEMA3A WILD-TYPE" 
      TCGA-38-4631       TCGA-38-4632       TCGA-38-6178       TCGA-44-2655 
"SEMA3A WILD-TYPE" "SEMA3A WILD-TYPE" "SEMA3A WILD-TYPE" "SEMA3A WILD-TYPE" 
      TCGA-44-2656       TCGA-44-2657       TCGA-44-2659       TCGA-44-2661 
  "SEMA3A MUTATED" "SEMA3A WILD-TYPE" "SEMA3A WILD-TYPE" "SEMA3A WILD-TYPE" 
      TCGA-44-2662       TCGA-44-2665       TCGA-44-2666       TCGA-44-2668 
"SEMA3A WILD-TYPE" "SEMA3A WILD-TYPE" "SEMA3A WILD-TYPE" "SEMA3A WILD-TYPE" 
      TCGA-44-3396       TCGA-44-3398       TCGA-44-3918       TCGA-44-3919 
"SEMA3A WILD-TYPE" "SEMA3A WILD-TYPE" "SEMA3A WILD-TYPE" "SEMA3A WILD-TYPE" 
      TCGA-44-4112       TCGA-44-5643       TCGA-44-5645       TCGA-44-6144 
"SEMA3A WILD-TYPE" "SEMA3A WILD-TYPE" "SEMA3A WILD-TYPE" "SEMA3A WILD-TYPE" 
      TCGA-44-6145       TCGA-44-6146       TCGA-44-6147       TCGA-44-6148 
  "SEMA3A MUTATED" "SEMA3A WILD-TYPE" "SEMA3A WILD-TYPE" "SEMA3A WILD-TYPE" 
      TCGA-44-6774       TCGA-44-6775       TCGA-44-6776       TCGA-44-6777 
"SEMA3A WILD-TYPE" "SEMA3A WILD-TYPE" "SEMA3A WILD-TYPE" "SEMA3A WILD-TYPE" 
      TCGA-44-6778       TCGA-44-6779       TCGA-49-4486       TCGA-49-4487 
"SEMA3A WILD-TYPE" "SEMA3A WILD-TYPE" "SEMA3A WILD-TYPE" "SEMA3A WILD-TYPE" 
      TCGA-49-4488       TCGA-49-4490       TCGA-49-4494       TCGA-49-4501 
"SEMA3A WILD-TYPE" "SEMA3A WILD-TYPE" "SEMA3A WILD-TYPE" "SEMA3A WILD-TYPE" 
      TCGA-49-4505       TCGA-49-4506       TCGA-49-4507       TCGA-49-4510 
"SEMA3A WILD-TYPE" "SEMA3A WILD-TYPE" "SEMA3A WILD-TYPE" "SEMA3A WILD-TYPE" 
      TCGA-49-4512       TCGA-49-4514       TCGA-49-6742       TCGA-49-6743 
"SEMA3A WILD-TYPE" "SEMA3A WILD-TYPE" "SEMA3A WILD-TYPE"   "SEMA3A MUTATED" 
      TCGA-49-6744       TCGA-49-6745       TCGA-50-5044       TCGA-50-5045 
"SEMA3A WILD-TYPE"   "SEMA3A MUTATED" "SEMA3A WILD-TYPE" "SEMA3A WILD-TYPE" 
      TCGA-50-5049       TCGA-50-5051       TCGA-50-5055       TCGA-50-5066 
"SEMA3A WILD-TYPE" "SEMA3A WILD-TYPE" "SEMA3A WILD-TYPE" "SEMA3A WILD-TYPE" 
      TCGA-50-5068       TCGA-50-5072       TCGA-50-5930       TCGA-50-5931 
"SEMA3A WILD-TYPE" "SEMA3A WILD-TYPE" "SEMA3A WILD-TYPE" "SEMA3A WILD-TYPE" 
      TCGA-50-5932       TCGA-50-5933       TCGA-50-5935       TCGA-50-5936 
"SEMA3A WILD-TYPE" "SEMA3A WILD-TYPE" "SEMA3A WILD-TYPE" "SEMA3A WILD-TYPE" 
      TCGA-50-5939       TCGA-50-5941       TCGA-50-5942       TCGA-50-5944 
"SEMA3A WILD-TYPE" "SEMA3A WILD-TYPE" "SEMA3A WILD-TYPE" "SEMA3A WILD-TYPE" 
      TCGA-50-5946       TCGA-50-6590       TCGA-50-6591       TCGA-50-6592 
"SEMA3A WILD-TYPE" "SEMA3A WILD-TYPE" "SEMA3A WILD-TYPE" "SEMA3A WILD-TYPE" 
      TCGA-50-6593       TCGA-50-6594       TCGA-50-6595       TCGA-50-6597 
"SEMA3A WILD-TYPE"   "SEMA3A MUTATED" "SEMA3A WILD-TYPE" "SEMA3A WILD-TYPE" 
      TCGA-55-1592       TCGA-55-1594       TCGA-55-1595       TCGA-55-1596 
"SEMA3A WILD-TYPE" "SEMA3A WILD-TYPE" "SEMA3A WILD-TYPE" "SEMA3A WILD-TYPE" 
      TCGA-55-5899       TCGA-55-6543       TCGA-55-6642       TCGA-55-6712 
"SEMA3A WILD-TYPE" "SEMA3A WILD-TYPE" "SEMA3A WILD-TYPE" "SEMA3A WILD-TYPE" 
      TCGA-64-1676       TCGA-64-1677       TCGA-64-1678       TCGA-64-1680 
"SEMA3A WILD-TYPE" "SEMA3A WILD-TYPE" "SEMA3A WILD-TYPE" "SEMA3A WILD-TYPE" 
      TCGA-64-5774       TCGA-64-5775       TCGA-64-5778       TCGA-64-5779 
"SEMA3A WILD-TYPE" "SEMA3A WILD-TYPE" "SEMA3A WILD-TYPE" "SEMA3A WILD-TYPE" 
      TCGA-64-5781       TCGA-64-5815       TCGA-67-3770       TCGA-67-3771 
  "SEMA3A MUTATED" "SEMA3A WILD-TYPE" "SEMA3A WILD-TYPE" "SEMA3A WILD-TYPE" 
      TCGA-67-3772       TCGA-67-3773       TCGA-67-3774       TCGA-67-6215 
"SEMA3A WILD-TYPE" "SEMA3A WILD-TYPE" "SEMA3A WILD-TYPE" "SEMA3A WILD-TYPE" 
      TCGA-67-6216       TCGA-67-6217       TCGA-71-6725       TCGA-73-4658 
"SEMA3A WILD-TYPE" "SEMA3A WILD-TYPE" "SEMA3A WILD-TYPE" "SEMA3A WILD-TYPE" 
      TCGA-73-4659       TCGA-73-4662       TCGA-73-4666       TCGA-73-4668 
"SEMA3A WILD-TYPE" "SEMA3A WILD-TYPE" "SEMA3A WILD-TYPE" "SEMA3A WILD-TYPE" 
      TCGA-73-4670       TCGA-73-4675       TCGA-73-4676       TCGA-73-4677 
"SEMA3A WILD-TYPE" "SEMA3A WILD-TYPE" "SEMA3A WILD-TYPE" "SEMA3A WILD-TYPE" 
      TCGA-91-6828       TCGA-91-6829       TCGA-91-6831       TCGA-91-6835 
"SEMA3A WILD-TYPE" "SEMA3A WILD-TYPE" "SEMA3A WILD-TYPE" "SEMA3A WILD-TYPE" 
      TCGA-91-6836 
"SEMA3A WILD-TYPE" 
      TCGA-05-4249       TCGA-05-4250       TCGA-05-4382       TCGA-05-4384 
"SEMA3A WILD-TYPE" "SEMA3A WILD-TYPE"   "SEMA3A MUTATED" "SEMA3A WILD-TYPE" 
      TCGA-05-4390       TCGA-05-4396       TCGA-05-4397       TCGA-05-4398 
"SEMA3A WILD-TYPE"   "SEMA3A MUTATED" "SEMA3A WILD-TYPE" "SEMA3A WILD-TYPE" 
      TCGA-05-4402       TCGA-05-4405       TCGA-05-4415       TCGA-05-4417 
"SEMA3A WILD-TYPE" "SEMA3A WILD-TYPE" "SEMA3A WILD-TYPE" "SEMA3A WILD-TYPE" 
      TCGA-05-4418       TCGA-05-4420       TCGA-05-4424       TCGA-05-4426 
  "SEMA3A MUTATED" "SEMA3A WILD-TYPE" "SEMA3A WILD-TYPE" "SEMA3A WILD-TYPE" 
      TCGA-05-4427       TCGA-05-4430       TCGA-05-4432       TCGA-05-4433 
"SEMA3A WILD-TYPE" "SEMA3A WILD-TYPE" "SEMA3A WILD-TYPE" "SEMA3A WILD-TYPE" 
      TCGA-05-4434       TCGA-05-5420       TCGA-05-5423       TCGA-05-5425 
"SEMA3A WILD-TYPE" "SEMA3A WILD-TYPE" "SEMA3A WILD-TYPE" "SEMA3A WILD-TYPE" 
      TCGA-05-5429       TCGA-05-5715       TCGA-35-3615       TCGA-35-4122 
"SEMA3A WILD-TYPE" "SEMA3A WILD-TYPE" "SEMA3A WILD-TYPE" "SEMA3A WILD-TYPE" 
      TCGA-35-4123       TCGA-35-5375       TCGA-38-4625       TCGA-38-4626 
"SEMA3A WILD-TYPE" "SEMA3A WILD-TYPE" "SEMA3A WILD-TYPE" "SEMA3A WILD-TYPE" 
      TCGA-38-4627       TCGA-38-4628       TCGA-38-4629       TCGA-38-4630 
"SEMA3A WILD-TYPE" "SEMA3A WILD-TYPE" "SEMA3A WILD-TYPE" "SEMA3A WILD-TYPE" 
      TCGA-38-4631       TCGA-38-4632       TCGA-38-6178       TCGA-44-2655 
"SEMA3A WILD-TYPE" "SEMA3A WILD-TYPE" "SEMA3A WILD-TYPE" "SEMA3A WILD-TYPE" 
      TCGA-44-2656       TCGA-44-2657       TCGA-44-2659       TCGA-44-2661 
  "SEMA3A MUTATED" "SEMA3A WILD-TYPE" "SEMA3A WILD-TYPE" "SEMA3A WILD-TYPE" 
      TCGA-44-2662       TCGA-44-2665       TCGA-44-2666       TCGA-44-2668 
"SEMA3A WILD-TYPE" "SEMA3A WILD-TYPE" "SEMA3A WILD-TYPE" "SEMA3A WILD-TYPE" 
      TCGA-44-3396       TCGA-44-3398       TCGA-44-3918       TCGA-44-3919 
"SEMA3A WILD-TYPE" "SEMA3A WILD-TYPE" "SEMA3A WILD-TYPE" "SEMA3A WILD-TYPE" 
      TCGA-44-4112       TCGA-44-5643       TCGA-44-5645       TCGA-44-6144 
"SEMA3A WILD-TYPE" "SEMA3A WILD-TYPE" "SEMA3A WILD-TYPE" "SEMA3A WILD-TYPE" 
      TCGA-44-6145       TCGA-44-6146       TCGA-44-6147       TCGA-44-6148 
  "SEMA3A MUTATED" "SEMA3A WILD-TYPE" "SEMA3A WILD-TYPE" "SEMA3A WILD-TYPE" 
      TCGA-44-6774       TCGA-44-6775       TCGA-44-6776       TCGA-44-6777 
"SEMA3A WILD-TYPE" "SEMA3A WILD-TYPE" "SEMA3A WILD-TYPE" "SEMA3A WILD-TYPE" 
      TCGA-44-6778       TCGA-44-6779       TCGA-49-4486       TCGA-49-4487 
"SEMA3A WILD-TYPE" "SEMA3A WILD-TYPE" "SEMA3A WILD-TYPE" "SEMA3A WILD-TYPE" 
      TCGA-49-4488       TCGA-49-4490       TCGA-49-4494       TCGA-49-4501 
"SEMA3A WILD-TYPE" "SEMA3A WILD-TYPE" "SEMA3A WILD-TYPE" "SEMA3A WILD-TYPE" 
      TCGA-49-4505       TCGA-49-4506       TCGA-49-4507       TCGA-49-4510 
"SEMA3A WILD-TYPE" "SEMA3A WILD-TYPE" "SEMA3A WILD-TYPE" "SEMA3A WILD-TYPE" 
      TCGA-49-4512       TCGA-49-4514       TCGA-49-6742       TCGA-49-6743 
"SEMA3A WILD-TYPE" "SEMA3A WILD-TYPE" "SEMA3A WILD-TYPE"   "SEMA3A MUTATED" 
      TCGA-49-6744       TCGA-49-6745       TCGA-50-5044       TCGA-50-5045 
"SEMA3A WILD-TYPE"   "SEMA3A MUTATED" "SEMA3A WILD-TYPE" "SEMA3A WILD-TYPE" 
      TCGA-50-5049       TCGA-50-5051       TCGA-50-5055       TCGA-50-5066 
"SEMA3A WILD-TYPE" "SEMA3A WILD-TYPE" "SEMA3A WILD-TYPE" "SEMA3A WILD-TYPE" 
      TCGA-50-5068       TCGA-50-5072       TCGA-50-5930       TCGA-50-5931 
"SEMA3A WILD-TYPE" "SEMA3A WILD-TYPE" "SEMA3A WILD-TYPE" "SEMA3A WILD-TYPE" 
      TCGA-50-5932       TCGA-50-5933       TCGA-50-5935       TCGA-50-5936 
"SEMA3A WILD-TYPE" "SEMA3A WILD-TYPE" "SEMA3A WILD-TYPE" "SEMA3A WILD-TYPE" 
      TCGA-50-5939       TCGA-50-5941       TCGA-50-5942       TCGA-50-5944 
"SEMA3A WILD-TYPE" "SEMA3A WILD-TYPE" "SEMA3A WILD-TYPE" "SEMA3A WILD-TYPE" 
      TCGA-50-5946       TCGA-50-6590       TCGA-50-6591       TCGA-50-6592 
"SEMA3A WILD-TYPE" "SEMA3A WILD-TYPE" "SEMA3A WILD-TYPE" "SEMA3A WILD-TYPE" 
      TCGA-50-6593       TCGA-50-6594       TCGA-50-6595       TCGA-50-6597 
"SEMA3A WILD-TYPE"   "SEMA3A MUTATED" "SEMA3A WILD-TYPE" "SEMA3A WILD-TYPE" 
      TCGA-55-1592       TCGA-55-1594       TCGA-55-1595       TCGA-55-1596 
"SEMA3A WILD-TYPE" "SEMA3A WILD-TYPE" "SEMA3A WILD-TYPE" "SEMA3A WILD-TYPE" 
      TCGA-55-5899       TCGA-55-6543       TCGA-55-6642       TCGA-55-6712 
"SEMA3A WILD-TYPE" "SEMA3A WILD-TYPE" "SEMA3A WILD-TYPE" "SEMA3A WILD-TYPE" 
      TCGA-64-1676       TCGA-64-1677       TCGA-64-1678       TCGA-64-1680 
"SEMA3A WILD-TYPE" "SEMA3A WILD-TYPE" "SEMA3A WILD-TYPE" "SEMA3A WILD-TYPE" 
      TCGA-64-5774       TCGA-64-5775       TCGA-64-5778       TCGA-64-5779 
"SEMA3A WILD-TYPE" "SEMA3A WILD-TYPE" "SEMA3A WILD-TYPE" "SEMA3A WILD-TYPE" 
      TCGA-64-5781       TCGA-64-5815       TCGA-67-3770       TCGA-67-3771 
  "SEMA3A MUTATED" "SEMA3A WILD-TYPE" "SEMA3A WILD-TYPE" "SEMA3A WILD-TYPE" 
      TCGA-67-3772       TCGA-67-3773       TCGA-67-3774       TCGA-67-6215 
"SEMA3A WILD-TYPE" "SEMA3A WILD-TYPE" "SEMA3A WILD-TYPE" "SEMA3A WILD-TYPE" 
      TCGA-67-6216       TCGA-67-6217       TCGA-71-6725       TCGA-73-4658 
"SEMA3A WILD-TYPE" "SEMA3A WILD-TYPE" "SEMA3A WILD-TYPE" "SEMA3A WILD-TYPE" 
      TCGA-73-4659       TCGA-73-4662       TCGA-73-4666       TCGA-73-4668 
"SEMA3A WILD-TYPE" "SEMA3A WILD-TYPE" "SEMA3A WILD-TYPE" "SEMA3A WILD-TYPE" 
      TCGA-73-4670       TCGA-73-4675       TCGA-73-4676       TCGA-73-4677 
"SEMA3A WILD-TYPE" "SEMA3A WILD-TYPE" "SEMA3A WILD-TYPE" "SEMA3A WILD-TYPE" 
      TCGA-91-6828       TCGA-91-6829       TCGA-91-6831       TCGA-91-6835 
"SEMA3A WILD-TYPE" "SEMA3A WILD-TYPE" "SEMA3A WILD-TYPE" "SEMA3A WILD-TYPE" 
      TCGA-91-6836 
"SEMA3A WILD-TYPE" 
[1] "hr=" "1.7"
D87V2, continuous
D87V3, binary
[1] "tbl2"
                  cls
clus               [,1] [,2]
  SEMA3A MUTATED      4    6
  SEMA3A WILD-TYPE   89   73
        clus
vv       SEMA3A MUTATED SEMA3A WILD-TYPE
  FEMALE              4               89
  MALE                6               73
D87V4, continuous
D87V5, multiclass
D87V6, multiclass
    clus
vv   SEMA3A MUTATED SEMA3A WILD-TYPE
  T1              3               38
  T2              4              104
  T3              2               12
  T4              1                7
D87V7, multiclass
       clus
vv      SEMA3A MUTATED SEMA3A WILD-TYPE
  N0                 4               91
  N1                 2               35
  N2+N3              4               31
D87V8, multiclass
    clus
vv   SEMA3A MUTATED SEMA3A WILD-TYPE
  M0              8              129
  M1              0                9
  MX              2               20
D87V9, multiclass
     clus
vv    SEMA3A MUTATED SEMA3A WILD-TYPE
  I                4               84
  II               1               32
  III              5               34
  IV               0                9
D87V10, binary
[1] "tbl2"
                  cls
clus               [,1] [,2]
  SEMA3A MUTATED      0   10
  SEMA3A WILD-TYPE   16  146
     clus
vv    SEMA3A MUTATED SEMA3A WILD-TYPE
  NO               0               16
  YES             10              146
D87V11, continuous
D87V12, continuous
D87V13, multiclass
                                             clus
vv                                            SEMA3A MUTATED SEMA3A WILD-TYPE
  CURRENT REFORMED SMOKER FOR < OR = 15 YEARS              7               55
  CURRENT REFORMED SMOKER FOR > 15 YEARS                   2               44
  CURRENT SMOKER                                           1               27
  LIFELONG NON-SMOKER                                      0               24
D87V14, continuous

Clustering(88) Variable = OR2T27 MUTATION ANALYSIS
D88V1, survival
                  sevent
clus2               0  1
  OR2T27 MUTATED    5  2
  OR2T27 WILD-TYPE 94 48
  OR2T27 MUTATED OR2T27 WILD-TYPE 
               7              142 
  OR2T27 MUTATED OR2T27 WILD-TYPE 
               2               48 
$`OR2T27 MUTATED`
TCGA-35-5375 TCGA-44-2659 TCGA-44-6778 TCGA-50-6590 TCGA-64-5781 TCGA-67-3771 
        8.68        17.39        36.49        42.31        39.52         1.97 
TCGA-73-4658 
       52.57 

$`OR2T27 WILD-TYPE`
TCGA-05-4249 TCGA-05-4250 TCGA-05-4382 TCGA-05-4384 TCGA-05-4390 TCGA-05-4396 
       38.07         3.98        19.92        14.01        37.02         9.96 
TCGA-05-4397 TCGA-05-4398 TCGA-05-4402 TCGA-05-4405 TCGA-05-4415 TCGA-05-4417 
       24.03        47.05         8.02        20.05         2.96        14.93 
TCGA-05-4418 TCGA-05-4420 TCGA-05-4424 TCGA-05-4426 TCGA-05-4427 TCGA-05-4430 
        8.98        29.95        30.02        26.01        26.01        25.02 
TCGA-05-4432 TCGA-05-4433 TCGA-05-4434 TCGA-05-5420 TCGA-05-5423 TCGA-05-5425 
       25.02        24.00        15.02         1.02         4.96         2.96 
TCGA-05-5429 TCGA-05-5715 TCGA-35-3615 TCGA-35-4122 TCGA-35-4123 TCGA-38-4625 
        0.99         2.04         0.46         7.36         5.95        47.61 
TCGA-38-4626 TCGA-38-4627 TCGA-38-4628 TCGA-38-4629 TCGA-38-4630 TCGA-38-4631 
       85.32        37.71        49.02        28.37        35.28        11.64 
TCGA-38-4632 TCGA-38-6178 TCGA-44-2655 TCGA-44-2656 TCGA-44-2657 TCGA-44-2661 
       44.61         5.19        18.87        19.10        13.15         3.39 
TCGA-44-2662 TCGA-44-2665 TCGA-44-2666 TCGA-44-2668 TCGA-44-3396 TCGA-44-3398 
       15.78        13.15         3.19         8.09        10.22         8.32 
TCGA-44-3918 TCGA-44-3919 TCGA-44-4112 TCGA-44-5643 TCGA-44-5645 TCGA-44-6144 
        6.44         6.21         4.60         3.48         6.84         0.30 
TCGA-44-6145 TCGA-44-6146 TCGA-44-6147 TCGA-44-6148 TCGA-44-6774 TCGA-44-6775 
        3.35         9.93         7.76         3.12         5.42         2.70 
TCGA-44-6776 TCGA-44-6777 TCGA-44-6779 TCGA-49-4486 TCGA-49-4487 TCGA-49-4488 
       63.72        32.45        16.41        76.21        28.11        28.57 
TCGA-49-4490 TCGA-49-4494 TCGA-49-4501 TCGA-49-4505 TCGA-49-4506 TCGA-49-4507 
       12.66        35.54        46.72        14.07        32.84         8.81 
TCGA-49-4510 TCGA-49-4512 TCGA-49-4514 TCGA-49-6742 TCGA-49-6743 TCGA-49-6744 
       29.46        29.75        43.20        15.02        12.13        12.99 
TCGA-49-6745 TCGA-50-5044 TCGA-50-5045 TCGA-50-5049 TCGA-50-5051 TCGA-50-5055 
        4.93        20.48        71.47        48.82        14.96        25.81 
TCGA-50-5066 TCGA-50-5068 TCGA-50-5072 TCGA-50-5930 TCGA-50-5931 TCGA-50-5932 
        9.76        49.28         8.05         9.27         8.78        35.87 
TCGA-50-5933 TCGA-50-5935 TCGA-50-5936 TCGA-50-5939 TCGA-50-5941 TCGA-50-5942 
       77.88        21.47         8.45        15.12         9.37         4.44 
TCGA-50-5944 TCGA-50-5946 TCGA-50-6591 TCGA-50-6592 TCGA-50-6593 TCGA-50-6594 
       12.26        11.47         3.88        25.51        11.05        12.16 
TCGA-50-6595 TCGA-50-6597 TCGA-55-1592 TCGA-55-1594 TCGA-55-1595 TCGA-55-1596 
        6.21        33.37        23.05        38.73        48.62        45.17 
TCGA-55-5899 TCGA-55-6543 TCGA-55-6642 TCGA-55-6712 TCGA-64-1676 TCGA-64-1677 
        2.86         0.07        32.61         0.79        56.81        20.65 
TCGA-64-1678 TCGA-64-1680 TCGA-64-5774 TCGA-64-5775 TCGA-64-5778 TCGA-64-5779 
       39.09        37.02        83.84         0.10        30.44        16.67 
TCGA-64-5815 TCGA-67-3770 TCGA-67-3772 TCGA-67-3773 TCGA-67-3774 TCGA-67-6215 
        7.33         0.99         0.59         2.04         0.59         0.89 
TCGA-67-6216 TCGA-67-6217 TCGA-71-6725 TCGA-73-4659 TCGA-73-4662 TCGA-73-4666 
        0.69        13.87         2.01        23.38        29.95        20.28 
TCGA-73-4668 TCGA-73-4670 TCGA-73-4675 TCGA-73-4676 TCGA-73-4677 TCGA-91-6828 
       15.35         0.46         1.32         4.01         1.25         1.22 
TCGA-91-6829 TCGA-91-6831 TCGA-91-6835 TCGA-91-6836 
       41.33         1.28         1.15         0.36 

  OR2T27 MUTATED OR2T27 WILD-TYPE 
            1.97             0.07 
  OR2T27 MUTATED OR2T27 WILD-TYPE 
           52.57            85.32 
  OR2T27 MUTATED OR2T27 WILD-TYPE 
           36.49            13.15 
[1] "2.0 - 52.6 (36.5)" "0.1 - 85.3 (13.2)"
      TCGA-05-4249       TCGA-05-4250       TCGA-05-4382       TCGA-05-4384 
"OR2T27 WILD-TYPE" "OR2T27 WILD-TYPE" "OR2T27 WILD-TYPE" "OR2T27 WILD-TYPE" 
      TCGA-05-4390       TCGA-05-4396       TCGA-05-4397       TCGA-05-4398 
"OR2T27 WILD-TYPE" "OR2T27 WILD-TYPE" "OR2T27 WILD-TYPE" "OR2T27 WILD-TYPE" 
      TCGA-05-4402       TCGA-05-4405       TCGA-05-4415       TCGA-05-4417 
"OR2T27 WILD-TYPE" "OR2T27 WILD-TYPE" "OR2T27 WILD-TYPE" "OR2T27 WILD-TYPE" 
      TCGA-05-4418       TCGA-05-4420       TCGA-05-4424       TCGA-05-4426 
"OR2T27 WILD-TYPE" "OR2T27 WILD-TYPE" "OR2T27 WILD-TYPE" "OR2T27 WILD-TYPE" 
      TCGA-05-4427       TCGA-05-4430       TCGA-05-4432       TCGA-05-4433 
"OR2T27 WILD-TYPE" "OR2T27 WILD-TYPE" "OR2T27 WILD-TYPE" "OR2T27 WILD-TYPE" 
      TCGA-05-4434       TCGA-05-5420       TCGA-05-5423       TCGA-05-5425 
"OR2T27 WILD-TYPE" "OR2T27 WILD-TYPE" "OR2T27 WILD-TYPE" "OR2T27 WILD-TYPE" 
      TCGA-05-5429       TCGA-05-5715       TCGA-35-3615       TCGA-35-4122 
"OR2T27 WILD-TYPE" "OR2T27 WILD-TYPE" "OR2T27 WILD-TYPE" "OR2T27 WILD-TYPE" 
      TCGA-35-4123       TCGA-35-5375       TCGA-38-4625       TCGA-38-4626 
"OR2T27 WILD-TYPE"   "OR2T27 MUTATED" "OR2T27 WILD-TYPE" "OR2T27 WILD-TYPE" 
      TCGA-38-4627       TCGA-38-4628       TCGA-38-4629       TCGA-38-4630 
"OR2T27 WILD-TYPE" "OR2T27 WILD-TYPE" "OR2T27 WILD-TYPE" "OR2T27 WILD-TYPE" 
      TCGA-38-4631       TCGA-38-4632       TCGA-38-6178       TCGA-44-2655 
"OR2T27 WILD-TYPE" "OR2T27 WILD-TYPE" "OR2T27 WILD-TYPE" "OR2T27 WILD-TYPE" 
      TCGA-44-2656       TCGA-44-2657       TCGA-44-2659       TCGA-44-2661 
"OR2T27 WILD-TYPE" "OR2T27 WILD-TYPE"   "OR2T27 MUTATED" "OR2T27 WILD-TYPE" 
      TCGA-44-2662       TCGA-44-2665       TCGA-44-2666       TCGA-44-2668 
"OR2T27 WILD-TYPE" "OR2T27 WILD-TYPE" "OR2T27 WILD-TYPE" "OR2T27 WILD-TYPE" 
      TCGA-44-3396       TCGA-44-3398       TCGA-44-3918       TCGA-44-3919 
"OR2T27 WILD-TYPE" "OR2T27 WILD-TYPE" "OR2T27 WILD-TYPE" "OR2T27 WILD-TYPE" 
      TCGA-44-4112       TCGA-44-5643       TCGA-44-5645       TCGA-44-6144 
"OR2T27 WILD-TYPE" "OR2T27 WILD-TYPE" "OR2T27 WILD-TYPE" "OR2T27 WILD-TYPE" 
      TCGA-44-6145       TCGA-44-6146       TCGA-44-6147       TCGA-44-6148 
"OR2T27 WILD-TYPE" "OR2T27 WILD-TYPE" "OR2T27 WILD-TYPE" "OR2T27 WILD-TYPE" 
      TCGA-44-6774       TCGA-44-6775       TCGA-44-6776       TCGA-44-6777 
"OR2T27 WILD-TYPE" "OR2T27 WILD-TYPE" "OR2T27 WILD-TYPE" "OR2T27 WILD-TYPE" 
      TCGA-44-6778       TCGA-44-6779       TCGA-49-4486       TCGA-49-4487 
  "OR2T27 MUTATED" "OR2T27 WILD-TYPE" "OR2T27 WILD-TYPE" "OR2T27 WILD-TYPE" 
      TCGA-49-4488       TCGA-49-4490       TCGA-49-4494       TCGA-49-4501 
"OR2T27 WILD-TYPE" "OR2T27 WILD-TYPE" "OR2T27 WILD-TYPE" "OR2T27 WILD-TYPE" 
      TCGA-49-4505       TCGA-49-4506       TCGA-49-4507       TCGA-49-4510 
"OR2T27 WILD-TYPE" "OR2T27 WILD-TYPE" "OR2T27 WILD-TYPE" "OR2T27 WILD-TYPE" 
      TCGA-49-4512       TCGA-49-4514       TCGA-49-6742       TCGA-49-6743 
"OR2T27 WILD-TYPE" "OR2T27 WILD-TYPE" "OR2T27 WILD-TYPE" "OR2T27 WILD-TYPE" 
      TCGA-49-6744       TCGA-49-6745       TCGA-50-5044       TCGA-50-5045 
"OR2T27 WILD-TYPE" "OR2T27 WILD-TYPE" "OR2T27 WILD-TYPE" "OR2T27 WILD-TYPE" 
      TCGA-50-5049       TCGA-50-5051       TCGA-50-5055       TCGA-50-5066 
"OR2T27 WILD-TYPE" "OR2T27 WILD-TYPE" "OR2T27 WILD-TYPE" "OR2T27 WILD-TYPE" 
      TCGA-50-5068       TCGA-50-5072       TCGA-50-5930       TCGA-50-5931 
"OR2T27 WILD-TYPE" "OR2T27 WILD-TYPE" "OR2T27 WILD-TYPE" "OR2T27 WILD-TYPE" 
      TCGA-50-5932       TCGA-50-5933       TCGA-50-5935       TCGA-50-5936 
"OR2T27 WILD-TYPE" "OR2T27 WILD-TYPE" "OR2T27 WILD-TYPE" "OR2T27 WILD-TYPE" 
      TCGA-50-5939       TCGA-50-5941       TCGA-50-5942       TCGA-50-5944 
"OR2T27 WILD-TYPE" "OR2T27 WILD-TYPE" "OR2T27 WILD-TYPE" "OR2T27 WILD-TYPE" 
      TCGA-50-5946       TCGA-50-6590       TCGA-50-6591       TCGA-50-6592 
"OR2T27 WILD-TYPE"   "OR2T27 MUTATED" "OR2T27 WILD-TYPE" "OR2T27 WILD-TYPE" 
      TCGA-50-6593       TCGA-50-6594       TCGA-50-6595       TCGA-50-6597 
"OR2T27 WILD-TYPE" "OR2T27 WILD-TYPE" "OR2T27 WILD-TYPE" "OR2T27 WILD-TYPE" 
      TCGA-55-1592       TCGA-55-1594       TCGA-55-1595       TCGA-55-1596 
"OR2T27 WILD-TYPE" "OR2T27 WILD-TYPE" "OR2T27 WILD-TYPE" "OR2T27 WILD-TYPE" 
      TCGA-55-5899       TCGA-55-6543       TCGA-55-6642       TCGA-55-6712 
"OR2T27 WILD-TYPE" "OR2T27 WILD-TYPE" "OR2T27 WILD-TYPE" "OR2T27 WILD-TYPE" 
      TCGA-64-1676       TCGA-64-1677       TCGA-64-1678       TCGA-64-1680 
"OR2T27 WILD-TYPE" "OR2T27 WILD-TYPE" "OR2T27 WILD-TYPE" "OR2T27 WILD-TYPE" 
      TCGA-64-5774       TCGA-64-5775       TCGA-64-5778       TCGA-64-5779 
"OR2T27 WILD-TYPE" "OR2T27 WILD-TYPE" "OR2T27 WILD-TYPE" "OR2T27 WILD-TYPE" 
      TCGA-64-5781       TCGA-64-5815       TCGA-67-3770       TCGA-67-3771 
  "OR2T27 MUTATED" "OR2T27 WILD-TYPE" "OR2T27 WILD-TYPE"   "OR2T27 MUTATED" 
      TCGA-67-3772       TCGA-67-3773       TCGA-67-3774       TCGA-67-6215 
"OR2T27 WILD-TYPE" "OR2T27 WILD-TYPE" "OR2T27 WILD-TYPE" "OR2T27 WILD-TYPE" 
      TCGA-67-6216       TCGA-67-6217       TCGA-71-6725       TCGA-73-4658 
"OR2T27 WILD-TYPE" "OR2T27 WILD-TYPE" "OR2T27 WILD-TYPE"   "OR2T27 MUTATED" 
      TCGA-73-4659       TCGA-73-4662       TCGA-73-4666       TCGA-73-4668 
"OR2T27 WILD-TYPE" "OR2T27 WILD-TYPE" "OR2T27 WILD-TYPE" "OR2T27 WILD-TYPE" 
      TCGA-73-4670       TCGA-73-4675       TCGA-73-4676       TCGA-73-4677 
"OR2T27 WILD-TYPE" "OR2T27 WILD-TYPE" "OR2T27 WILD-TYPE" "OR2T27 WILD-TYPE" 
      TCGA-91-6828       TCGA-91-6829       TCGA-91-6831       TCGA-91-6835 
"OR2T27 WILD-TYPE" "OR2T27 WILD-TYPE" "OR2T27 WILD-TYPE" "OR2T27 WILD-TYPE" 
      TCGA-91-6836 
"OR2T27 WILD-TYPE" 
      TCGA-05-4249       TCGA-05-4250       TCGA-05-4382       TCGA-05-4384 
"OR2T27 WILD-TYPE" "OR2T27 WILD-TYPE" "OR2T27 WILD-TYPE" "OR2T27 WILD-TYPE" 
      TCGA-05-4390       TCGA-05-4396       TCGA-05-4397       TCGA-05-4398 
"OR2T27 WILD-TYPE" "OR2T27 WILD-TYPE" "OR2T27 WILD-TYPE" "OR2T27 WILD-TYPE" 
      TCGA-05-4402       TCGA-05-4405       TCGA-05-4415       TCGA-05-4417 
"OR2T27 WILD-TYPE" "OR2T27 WILD-TYPE" "OR2T27 WILD-TYPE" "OR2T27 WILD-TYPE" 
      TCGA-05-4418       TCGA-05-4420       TCGA-05-4424       TCGA-05-4426 
"OR2T27 WILD-TYPE" "OR2T27 WILD-TYPE" "OR2T27 WILD-TYPE" "OR2T27 WILD-TYPE" 
      TCGA-05-4427       TCGA-05-4430       TCGA-05-4432       TCGA-05-4433 
"OR2T27 WILD-TYPE" "OR2T27 WILD-TYPE" "OR2T27 WILD-TYPE" "OR2T27 WILD-TYPE" 
      TCGA-05-4434       TCGA-05-5420       TCGA-05-5423       TCGA-05-5425 
"OR2T27 WILD-TYPE" "OR2T27 WILD-TYPE" "OR2T27 WILD-TYPE" "OR2T27 WILD-TYPE" 
      TCGA-05-5429       TCGA-05-5715       TCGA-35-3615       TCGA-35-4122 
"OR2T27 WILD-TYPE" "OR2T27 WILD-TYPE" "OR2T27 WILD-TYPE" "OR2T27 WILD-TYPE" 
      TCGA-35-4123       TCGA-35-5375       TCGA-38-4625       TCGA-38-4626 
"OR2T27 WILD-TYPE"   "OR2T27 MUTATED" "OR2T27 WILD-TYPE" "OR2T27 WILD-TYPE" 
      TCGA-38-4627       TCGA-38-4628       TCGA-38-4629       TCGA-38-4630 
"OR2T27 WILD-TYPE" "OR2T27 WILD-TYPE" "OR2T27 WILD-TYPE" "OR2T27 WILD-TYPE" 
      TCGA-38-4631       TCGA-38-4632       TCGA-38-6178       TCGA-44-2655 
"OR2T27 WILD-TYPE" "OR2T27 WILD-TYPE" "OR2T27 WILD-TYPE" "OR2T27 WILD-TYPE" 
      TCGA-44-2656       TCGA-44-2657       TCGA-44-2659       TCGA-44-2661 
"OR2T27 WILD-TYPE" "OR2T27 WILD-TYPE"   "OR2T27 MUTATED" "OR2T27 WILD-TYPE" 
      TCGA-44-2662       TCGA-44-2665       TCGA-44-2666       TCGA-44-2668 
"OR2T27 WILD-TYPE" "OR2T27 WILD-TYPE" "OR2T27 WILD-TYPE" "OR2T27 WILD-TYPE" 
      TCGA-44-3396       TCGA-44-3398       TCGA-44-3918       TCGA-44-3919 
"OR2T27 WILD-TYPE" "OR2T27 WILD-TYPE" "OR2T27 WILD-TYPE" "OR2T27 WILD-TYPE" 
      TCGA-44-4112       TCGA-44-5643       TCGA-44-5645       TCGA-44-6144 
"OR2T27 WILD-TYPE" "OR2T27 WILD-TYPE" "OR2T27 WILD-TYPE" "OR2T27 WILD-TYPE" 
      TCGA-44-6145       TCGA-44-6146       TCGA-44-6147       TCGA-44-6148 
"OR2T27 WILD-TYPE" "OR2T27 WILD-TYPE" "OR2T27 WILD-TYPE" "OR2T27 WILD-TYPE" 
      TCGA-44-6774       TCGA-44-6775       TCGA-44-6776       TCGA-44-6777 
"OR2T27 WILD-TYPE" "OR2T27 WILD-TYPE" "OR2T27 WILD-TYPE" "OR2T27 WILD-TYPE" 
      TCGA-44-6778       TCGA-44-6779       TCGA-49-4486       TCGA-49-4487 
  "OR2T27 MUTATED" "OR2T27 WILD-TYPE" "OR2T27 WILD-TYPE" "OR2T27 WILD-TYPE" 
      TCGA-49-4488       TCGA-49-4490       TCGA-49-4494       TCGA-49-4501 
"OR2T27 WILD-TYPE" "OR2T27 WILD-TYPE" "OR2T27 WILD-TYPE" "OR2T27 WILD-TYPE" 
      TCGA-49-4505       TCGA-49-4506       TCGA-49-4507       TCGA-49-4510 
"OR2T27 WILD-TYPE" "OR2T27 WILD-TYPE" "OR2T27 WILD-TYPE" "OR2T27 WILD-TYPE" 
      TCGA-49-4512       TCGA-49-4514       TCGA-49-6742       TCGA-49-6743 
"OR2T27 WILD-TYPE" "OR2T27 WILD-TYPE" "OR2T27 WILD-TYPE" "OR2T27 WILD-TYPE" 
      TCGA-49-6744       TCGA-49-6745       TCGA-50-5044       TCGA-50-5045 
"OR2T27 WILD-TYPE" "OR2T27 WILD-TYPE" "OR2T27 WILD-TYPE" "OR2T27 WILD-TYPE" 
      TCGA-50-5049       TCGA-50-5051       TCGA-50-5055       TCGA-50-5066 
"OR2T27 WILD-TYPE" "OR2T27 WILD-TYPE" "OR2T27 WILD-TYPE" "OR2T27 WILD-TYPE" 
      TCGA-50-5068       TCGA-50-5072       TCGA-50-5930       TCGA-50-5931 
"OR2T27 WILD-TYPE" "OR2T27 WILD-TYPE" "OR2T27 WILD-TYPE" "OR2T27 WILD-TYPE" 
      TCGA-50-5932       TCGA-50-5933       TCGA-50-5935       TCGA-50-5936 
"OR2T27 WILD-TYPE" "OR2T27 WILD-TYPE" "OR2T27 WILD-TYPE" "OR2T27 WILD-TYPE" 
      TCGA-50-5939       TCGA-50-5941       TCGA-50-5942       TCGA-50-5944 
"OR2T27 WILD-TYPE" "OR2T27 WILD-TYPE" "OR2T27 WILD-TYPE" "OR2T27 WILD-TYPE" 
      TCGA-50-5946       TCGA-50-6590       TCGA-50-6591       TCGA-50-6592 
"OR2T27 WILD-TYPE"   "OR2T27 MUTATED" "OR2T27 WILD-TYPE" "OR2T27 WILD-TYPE" 
      TCGA-50-6593       TCGA-50-6594       TCGA-50-6595       TCGA-50-6597 
"OR2T27 WILD-TYPE" "OR2T27 WILD-TYPE" "OR2T27 WILD-TYPE" "OR2T27 WILD-TYPE" 
      TCGA-55-1592       TCGA-55-1594       TCGA-55-1595       TCGA-55-1596 
"OR2T27 WILD-TYPE" "OR2T27 WILD-TYPE" "OR2T27 WILD-TYPE" "OR2T27 WILD-TYPE" 
      TCGA-55-5899       TCGA-55-6543       TCGA-55-6642       TCGA-55-6712 
"OR2T27 WILD-TYPE" "OR2T27 WILD-TYPE" "OR2T27 WILD-TYPE" "OR2T27 WILD-TYPE" 
      TCGA-64-1676       TCGA-64-1677       TCGA-64-1678       TCGA-64-1680 
"OR2T27 WILD-TYPE" "OR2T27 WILD-TYPE" "OR2T27 WILD-TYPE" "OR2T27 WILD-TYPE" 
      TCGA-64-5774       TCGA-64-5775       TCGA-64-5778       TCGA-64-5779 
"OR2T27 WILD-TYPE" "OR2T27 WILD-TYPE" "OR2T27 WILD-TYPE" "OR2T27 WILD-TYPE" 
      TCGA-64-5781       TCGA-64-5815       TCGA-67-3770       TCGA-67-3771 
  "OR2T27 MUTATED" "OR2T27 WILD-TYPE" "OR2T27 WILD-TYPE"   "OR2T27 MUTATED" 
      TCGA-67-3772       TCGA-67-3773       TCGA-67-3774       TCGA-67-6215 
"OR2T27 WILD-TYPE" "OR2T27 WILD-TYPE" "OR2T27 WILD-TYPE" "OR2T27 WILD-TYPE" 
      TCGA-67-6216       TCGA-67-6217       TCGA-71-6725       TCGA-73-4658 
"OR2T27 WILD-TYPE" "OR2T27 WILD-TYPE" "OR2T27 WILD-TYPE"   "OR2T27 MUTATED" 
      TCGA-73-4659       TCGA-73-4662       TCGA-73-4666       TCGA-73-4668 
"OR2T27 WILD-TYPE" "OR2T27 WILD-TYPE" "OR2T27 WILD-TYPE" "OR2T27 WILD-TYPE" 
      TCGA-73-4670       TCGA-73-4675       TCGA-73-4676       TCGA-73-4677 
"OR2T27 WILD-TYPE" "OR2T27 WILD-TYPE" "OR2T27 WILD-TYPE" "OR2T27 WILD-TYPE" 
      TCGA-91-6828       TCGA-91-6829       TCGA-91-6831       TCGA-91-6835 
"OR2T27 WILD-TYPE" "OR2T27 WILD-TYPE" "OR2T27 WILD-TYPE" "OR2T27 WILD-TYPE" 
      TCGA-91-6836 
"OR2T27 WILD-TYPE" 
      TCGA-05-4249       TCGA-05-4250       TCGA-05-4382       TCGA-05-4384 
"OR2T27 WILD-TYPE" "OR2T27 WILD-TYPE" "OR2T27 WILD-TYPE" "OR2T27 WILD-TYPE" 
      TCGA-05-4390       TCGA-05-4396       TCGA-05-4397       TCGA-05-4398 
"OR2T27 WILD-TYPE" "OR2T27 WILD-TYPE" "OR2T27 WILD-TYPE" "OR2T27 WILD-TYPE" 
      TCGA-05-4402       TCGA-05-4405       TCGA-05-4415       TCGA-05-4417 
"OR2T27 WILD-TYPE" "OR2T27 WILD-TYPE" "OR2T27 WILD-TYPE" "OR2T27 WILD-TYPE" 
      TCGA-05-4418       TCGA-05-4420       TCGA-05-4424       TCGA-05-4426 
"OR2T27 WILD-TYPE" "OR2T27 WILD-TYPE" "OR2T27 WILD-TYPE" "OR2T27 WILD-TYPE" 
      TCGA-05-4427       TCGA-05-4430       TCGA-05-4432       TCGA-05-4433 
"OR2T27 WILD-TYPE" "OR2T27 WILD-TYPE" "OR2T27 WILD-TYPE" "OR2T27 WILD-TYPE" 
      TCGA-05-4434       TCGA-05-5420       TCGA-05-5423       TCGA-05-5425 
"OR2T27 WILD-TYPE" "OR2T27 WILD-TYPE" "OR2T27 WILD-TYPE" "OR2T27 WILD-TYPE" 
      TCGA-05-5429       TCGA-05-5715       TCGA-35-3615       TCGA-35-4122 
"OR2T27 WILD-TYPE" "OR2T27 WILD-TYPE" "OR2T27 WILD-TYPE" "OR2T27 WILD-TYPE" 
      TCGA-35-4123       TCGA-35-5375       TCGA-38-4625       TCGA-38-4626 
"OR2T27 WILD-TYPE"   "OR2T27 MUTATED" "OR2T27 WILD-TYPE" "OR2T27 WILD-TYPE" 
      TCGA-38-4627       TCGA-38-4628       TCGA-38-4629       TCGA-38-4630 
"OR2T27 WILD-TYPE" "OR2T27 WILD-TYPE" "OR2T27 WILD-TYPE" "OR2T27 WILD-TYPE" 
      TCGA-38-4631       TCGA-38-4632       TCGA-38-6178       TCGA-44-2655 
"OR2T27 WILD-TYPE" "OR2T27 WILD-TYPE" "OR2T27 WILD-TYPE" "OR2T27 WILD-TYPE" 
      TCGA-44-2656       TCGA-44-2657       TCGA-44-2659       TCGA-44-2661 
"OR2T27 WILD-TYPE" "OR2T27 WILD-TYPE"   "OR2T27 MUTATED" "OR2T27 WILD-TYPE" 
      TCGA-44-2662       TCGA-44-2665       TCGA-44-2666       TCGA-44-2668 
"OR2T27 WILD-TYPE" "OR2T27 WILD-TYPE" "OR2T27 WILD-TYPE" "OR2T27 WILD-TYPE" 
      TCGA-44-3396       TCGA-44-3398       TCGA-44-3918       TCGA-44-3919 
"OR2T27 WILD-TYPE" "OR2T27 WILD-TYPE" "OR2T27 WILD-TYPE" "OR2T27 WILD-TYPE" 
      TCGA-44-4112       TCGA-44-5643       TCGA-44-5645       TCGA-44-6144 
"OR2T27 WILD-TYPE" "OR2T27 WILD-TYPE" "OR2T27 WILD-TYPE" "OR2T27 WILD-TYPE" 
      TCGA-44-6145       TCGA-44-6146       TCGA-44-6147       TCGA-44-6148 
"OR2T27 WILD-TYPE" "OR2T27 WILD-TYPE" "OR2T27 WILD-TYPE" "OR2T27 WILD-TYPE" 
      TCGA-44-6774       TCGA-44-6775       TCGA-44-6776       TCGA-44-6777 
"OR2T27 WILD-TYPE" "OR2T27 WILD-TYPE" "OR2T27 WILD-TYPE" "OR2T27 WILD-TYPE" 
      TCGA-44-6778       TCGA-44-6779       TCGA-49-4486       TCGA-49-4487 
  "OR2T27 MUTATED" "OR2T27 WILD-TYPE" "OR2T27 WILD-TYPE" "OR2T27 WILD-TYPE" 
      TCGA-49-4488       TCGA-49-4490       TCGA-49-4494       TCGA-49-4501 
"OR2T27 WILD-TYPE" "OR2T27 WILD-TYPE" "OR2T27 WILD-TYPE" "OR2T27 WILD-TYPE" 
      TCGA-49-4505       TCGA-49-4506       TCGA-49-4507       TCGA-49-4510 
"OR2T27 WILD-TYPE" "OR2T27 WILD-TYPE" "OR2T27 WILD-TYPE" "OR2T27 WILD-TYPE" 
      TCGA-49-4512       TCGA-49-4514       TCGA-49-6742       TCGA-49-6743 
"OR2T27 WILD-TYPE" "OR2T27 WILD-TYPE" "OR2T27 WILD-TYPE" "OR2T27 WILD-TYPE" 
      TCGA-49-6744       TCGA-49-6745       TCGA-50-5044       TCGA-50-5045 
"OR2T27 WILD-TYPE" "OR2T27 WILD-TYPE" "OR2T27 WILD-TYPE" "OR2T27 WILD-TYPE" 
      TCGA-50-5049       TCGA-50-5051       TCGA-50-5055       TCGA-50-5066 
"OR2T27 WILD-TYPE" "OR2T27 WILD-TYPE" "OR2T27 WILD-TYPE" "OR2T27 WILD-TYPE" 
      TCGA-50-5068       TCGA-50-5072       TCGA-50-5930       TCGA-50-5931 
"OR2T27 WILD-TYPE" "OR2T27 WILD-TYPE" "OR2T27 WILD-TYPE" "OR2T27 WILD-TYPE" 
      TCGA-50-5932       TCGA-50-5933       TCGA-50-5935       TCGA-50-5936 
"OR2T27 WILD-TYPE" "OR2T27 WILD-TYPE" "OR2T27 WILD-TYPE" "OR2T27 WILD-TYPE" 
      TCGA-50-5939       TCGA-50-5941       TCGA-50-5942       TCGA-50-5944 
"OR2T27 WILD-TYPE" "OR2T27 WILD-TYPE" "OR2T27 WILD-TYPE" "OR2T27 WILD-TYPE" 
      TCGA-50-5946       TCGA-50-6590       TCGA-50-6591       TCGA-50-6592 
"OR2T27 WILD-TYPE"   "OR2T27 MUTATED" "OR2T27 WILD-TYPE" "OR2T27 WILD-TYPE" 
      TCGA-50-6593       TCGA-50-6594       TCGA-50-6595       TCGA-50-6597 
"OR2T27 WILD-TYPE" "OR2T27 WILD-TYPE" "OR2T27 WILD-TYPE" "OR2T27 WILD-TYPE" 
      TCGA-55-1592       TCGA-55-1594       TCGA-55-1595       TCGA-55-1596 
"OR2T27 WILD-TYPE" "OR2T27 WILD-TYPE" "OR2T27 WILD-TYPE" "OR2T27 WILD-TYPE" 
      TCGA-55-5899       TCGA-55-6543       TCGA-55-6642       TCGA-55-6712 
"OR2T27 WILD-TYPE" "OR2T27 WILD-TYPE" "OR2T27 WILD-TYPE" "OR2T27 WILD-TYPE" 
      TCGA-64-1676       TCGA-64-1677       TCGA-64-1678       TCGA-64-1680 
"OR2T27 WILD-TYPE" "OR2T27 WILD-TYPE" "OR2T27 WILD-TYPE" "OR2T27 WILD-TYPE" 
      TCGA-64-5774       TCGA-64-5775       TCGA-64-5778       TCGA-64-5779 
"OR2T27 WILD-TYPE" "OR2T27 WILD-TYPE" "OR2T27 WILD-TYPE" "OR2T27 WILD-TYPE" 
      TCGA-64-5781       TCGA-64-5815       TCGA-67-3770       TCGA-67-3771 
  "OR2T27 MUTATED" "OR2T27 WILD-TYPE" "OR2T27 WILD-TYPE"   "OR2T27 MUTATED" 
      TCGA-67-3772       TCGA-67-3773       TCGA-67-3774       TCGA-67-6215 
"OR2T27 WILD-TYPE" "OR2T27 WILD-TYPE" "OR2T27 WILD-TYPE" "OR2T27 WILD-TYPE" 
      TCGA-67-6216       TCGA-67-6217       TCGA-71-6725       TCGA-73-4658 
"OR2T27 WILD-TYPE" "OR2T27 WILD-TYPE" "OR2T27 WILD-TYPE"   "OR2T27 MUTATED" 
      TCGA-73-4659       TCGA-73-4662       TCGA-73-4666       TCGA-73-4668 
"OR2T27 WILD-TYPE" "OR2T27 WILD-TYPE" "OR2T27 WILD-TYPE" "OR2T27 WILD-TYPE" 
      TCGA-73-4670       TCGA-73-4675       TCGA-73-4676       TCGA-73-4677 
"OR2T27 WILD-TYPE" "OR2T27 WILD-TYPE" "OR2T27 WILD-TYPE" "OR2T27 WILD-TYPE" 
      TCGA-91-6828       TCGA-91-6829       TCGA-91-6831       TCGA-91-6835 
"OR2T27 WILD-TYPE" "OR2T27 WILD-TYPE" "OR2T27 WILD-TYPE" "OR2T27 WILD-TYPE" 
      TCGA-91-6836 
"OR2T27 WILD-TYPE" 
[1] "hr=" "1.9"
D88V2, continuous
D88V3, binary
[1] "tbl2"
                  cls
clus               [,1] [,2]
  OR2T27 MUTATED      5    3
  OR2T27 WILD-TYPE   88   76
        clus
vv       OR2T27 MUTATED OR2T27 WILD-TYPE
  FEMALE              5               88
  MALE                3               76
D88V4, continuous
[1] "Remove cluster labels:" "OR2T27 MUTATED"        
clus
  OR2T27 MUTATED OR2T27 WILD-TYPE 
               1               11 
      TCGA-35-4122       TCGA-35-4123       TCGA-64-1677       TCGA-64-5778 
"OR2T27 WILD-TYPE" "OR2T27 WILD-TYPE" "OR2T27 WILD-TYPE" "OR2T27 WILD-TYPE" 
      TCGA-71-6725       TCGA-73-4659       TCGA-73-4662       TCGA-73-4666 
"OR2T27 WILD-TYPE" "OR2T27 WILD-TYPE" "OR2T27 WILD-TYPE" "OR2T27 WILD-TYPE" 
      TCGA-73-4668       TCGA-73-4676       TCGA-75-5122 
"OR2T27 WILD-TYPE" "OR2T27 WILD-TYPE" "OR2T27 WILD-TYPE" 
D88V5, multiclass
D88V6, multiclass
    clus
vv   OR2T27 MUTATED OR2T27 WILD-TYPE
  T1              3               38
  T2              5              103
  T3              0               14
  T4              0                8
D88V7, multiclass
       clus
vv      OR2T27 MUTATED OR2T27 WILD-TYPE
  N0                 6               89
  N1                 1               36
  N2+N3              1               34
D88V8, multiclass
    clus
vv   OR2T27 MUTATED OR2T27 WILD-TYPE
  M0              7              130
  M1              0                9
  MX              1               21
D88V9, multiclass
     clus
vv    OR2T27 MUTATED OR2T27 WILD-TYPE
  I                6               82
  II               1               32
  III              1               38
  IV               0                9
D88V10, binary
[1] "tbl2"
                  cls
clus               [,1] [,2]
  OR2T27 MUTATED      0    8
  OR2T27 WILD-TYPE   16  148
     clus
vv    OR2T27 MUTATED OR2T27 WILD-TYPE
  NO               0               16
  YES              8              148
D88V11, continuous
D88V12, continuous
D88V13, multiclass
                                             clus
vv                                            OR2T27 MUTATED OR2T27 WILD-TYPE
  CURRENT REFORMED SMOKER FOR < OR = 15 YEARS              6               56
  CURRENT REFORMED SMOKER FOR > 15 YEARS                   2               44
  CURRENT SMOKER                                           0               28
  LIFELONG NON-SMOKER                                      0               24
D88V14, continuous

Clustering(89) Variable = VN1R2 MUTATION ANALYSIS
D89V1, survival
                 sevent
clus2              0  1
  VN1R2 MUTATED    3  3
  VN1R2 WILD-TYPE 96 47
  VN1R2 MUTATED VN1R2 WILD-TYPE 
              6             143 
  VN1R2 MUTATED VN1R2 WILD-TYPE 
              3              47 
$`VN1R2 MUTATED`
TCGA-05-4390 TCGA-05-4418 TCGA-05-4424 TCGA-44-6777 TCGA-50-5072 TCGA-50-6592 
       37.02         8.98        30.02        32.45         8.05        25.51 

$`VN1R2 WILD-TYPE`
TCGA-05-4249 TCGA-05-4250 TCGA-05-4382 TCGA-05-4384 TCGA-05-4396 TCGA-05-4397 
       38.07         3.98        19.92        14.01         9.96        24.03 
TCGA-05-4398 TCGA-05-4402 TCGA-05-4405 TCGA-05-4415 TCGA-05-4417 TCGA-05-4420 
       47.05         8.02        20.05         2.96        14.93        29.95 
TCGA-05-4426 TCGA-05-4427 TCGA-05-4430 TCGA-05-4432 TCGA-05-4433 TCGA-05-4434 
       26.01        26.01        25.02        25.02        24.00        15.02 
TCGA-05-5420 TCGA-05-5423 TCGA-05-5425 TCGA-05-5429 TCGA-05-5715 TCGA-35-3615 
        1.02         4.96         2.96         0.99         2.04         0.46 
TCGA-35-4122 TCGA-35-4123 TCGA-35-5375 TCGA-38-4625 TCGA-38-4626 TCGA-38-4627 
        7.36         5.95         8.68        47.61        85.32        37.71 
TCGA-38-4628 TCGA-38-4629 TCGA-38-4630 TCGA-38-4631 TCGA-38-4632 TCGA-38-6178 
       49.02        28.37        35.28        11.64        44.61         5.19 
TCGA-44-2655 TCGA-44-2656 TCGA-44-2657 TCGA-44-2659 TCGA-44-2661 TCGA-44-2662 
       18.87        19.10        13.15        17.39         3.39        15.78 
TCGA-44-2665 TCGA-44-2666 TCGA-44-2668 TCGA-44-3396 TCGA-44-3398 TCGA-44-3918 
       13.15         3.19         8.09        10.22         8.32         6.44 
TCGA-44-3919 TCGA-44-4112 TCGA-44-5643 TCGA-44-5645 TCGA-44-6144 TCGA-44-6145 
        6.21         4.60         3.48         6.84         0.30         3.35 
TCGA-44-6146 TCGA-44-6147 TCGA-44-6148 TCGA-44-6774 TCGA-44-6775 TCGA-44-6776 
        9.93         7.76         3.12         5.42         2.70        63.72 
TCGA-44-6778 TCGA-44-6779 TCGA-49-4486 TCGA-49-4487 TCGA-49-4488 TCGA-49-4490 
       36.49        16.41        76.21        28.11        28.57        12.66 
TCGA-49-4494 TCGA-49-4501 TCGA-49-4505 TCGA-49-4506 TCGA-49-4507 TCGA-49-4510 
       35.54        46.72        14.07        32.84         8.81        29.46 
TCGA-49-4512 TCGA-49-4514 TCGA-49-6742 TCGA-49-6743 TCGA-49-6744 TCGA-49-6745 
       29.75        43.20        15.02        12.13        12.99         4.93 
TCGA-50-5044 TCGA-50-5045 TCGA-50-5049 TCGA-50-5051 TCGA-50-5055 TCGA-50-5066 
       20.48        71.47        48.82        14.96        25.81         9.76 
TCGA-50-5068 TCGA-50-5930 TCGA-50-5931 TCGA-50-5932 TCGA-50-5933 TCGA-50-5935 
       49.28         9.27         8.78        35.87        77.88        21.47 
TCGA-50-5936 TCGA-50-5939 TCGA-50-5941 TCGA-50-5942 TCGA-50-5944 TCGA-50-5946 
        8.45        15.12         9.37         4.44        12.26        11.47 
TCGA-50-6590 TCGA-50-6591 TCGA-50-6593 TCGA-50-6594 TCGA-50-6595 TCGA-50-6597 
       42.31         3.88        11.05        12.16         6.21        33.37 
TCGA-55-1592 TCGA-55-1594 TCGA-55-1595 TCGA-55-1596 TCGA-55-5899 TCGA-55-6543 
       23.05        38.73        48.62        45.17         2.86         0.07 
TCGA-55-6642 TCGA-55-6712 TCGA-64-1676 TCGA-64-1677 TCGA-64-1678 TCGA-64-1680 
       32.61         0.79        56.81        20.65        39.09        37.02 
TCGA-64-5774 TCGA-64-5775 TCGA-64-5778 TCGA-64-5779 TCGA-64-5781 TCGA-64-5815 
       83.84         0.10        30.44        16.67        39.52         7.33 
TCGA-67-3770 TCGA-67-3771 TCGA-67-3772 TCGA-67-3773 TCGA-67-3774 TCGA-67-6215 
        0.99         1.97         0.59         2.04         0.59         0.89 
TCGA-67-6216 TCGA-67-6217 TCGA-71-6725 TCGA-73-4658 TCGA-73-4659 TCGA-73-4662 
        0.69        13.87         2.01        52.57        23.38        29.95 
TCGA-73-4666 TCGA-73-4668 TCGA-73-4670 TCGA-73-4675 TCGA-73-4676 TCGA-73-4677 
       20.28        15.35         0.46         1.32         4.01         1.25 
TCGA-91-6828 TCGA-91-6829 TCGA-91-6831 TCGA-91-6835 TCGA-91-6836 
        1.22        41.33         1.28         1.15         0.36 

  VN1R2 MUTATED VN1R2 WILD-TYPE 
           8.05            0.07 
  VN1R2 MUTATED VN1R2 WILD-TYPE 
          37.02           85.32 
  VN1R2 MUTATED VN1R2 WILD-TYPE 
         27.765          13.150 
[1] "8.1 - 37.0 (27.8)" "0.1 - 85.3 (13.2)"
     TCGA-05-4249      TCGA-05-4250      TCGA-05-4382      TCGA-05-4384 
"VN1R2 WILD-TYPE" "VN1R2 WILD-TYPE" "VN1R2 WILD-TYPE" "VN1R2 WILD-TYPE" 
     TCGA-05-4390      TCGA-05-4396      TCGA-05-4397      TCGA-05-4398 
  "VN1R2 MUTATED" "VN1R2 WILD-TYPE" "VN1R2 WILD-TYPE" "VN1R2 WILD-TYPE" 
     TCGA-05-4402      TCGA-05-4405      TCGA-05-4415      TCGA-05-4417 
"VN1R2 WILD-TYPE" "VN1R2 WILD-TYPE" "VN1R2 WILD-TYPE" "VN1R2 WILD-TYPE" 
     TCGA-05-4418      TCGA-05-4420      TCGA-05-4424      TCGA-05-4426 
  "VN1R2 MUTATED" "VN1R2 WILD-TYPE"   "VN1R2 MUTATED" "VN1R2 WILD-TYPE" 
     TCGA-05-4427      TCGA-05-4430      TCGA-05-4432      TCGA-05-4433 
"VN1R2 WILD-TYPE" "VN1R2 WILD-TYPE" "VN1R2 WILD-TYPE" "VN1R2 WILD-TYPE" 
     TCGA-05-4434      TCGA-05-5420      TCGA-05-5423      TCGA-05-5425 
"VN1R2 WILD-TYPE" "VN1R2 WILD-TYPE" "VN1R2 WILD-TYPE" "VN1R2 WILD-TYPE" 
     TCGA-05-5429      TCGA-05-5715      TCGA-35-3615      TCGA-35-4122 
"VN1R2 WILD-TYPE" "VN1R2 WILD-TYPE" "VN1R2 WILD-TYPE" "VN1R2 WILD-TYPE" 
     TCGA-35-4123      TCGA-35-5375      TCGA-38-4625      TCGA-38-4626 
"VN1R2 WILD-TYPE" "VN1R2 WILD-TYPE" "VN1R2 WILD-TYPE" "VN1R2 WILD-TYPE" 
     TCGA-38-4627      TCGA-38-4628      TCGA-38-4629      TCGA-38-4630 
"VN1R2 WILD-TYPE" "VN1R2 WILD-TYPE" "VN1R2 WILD-TYPE" "VN1R2 WILD-TYPE" 
     TCGA-38-4631      TCGA-38-4632      TCGA-38-6178      TCGA-44-2655 
"VN1R2 WILD-TYPE" "VN1R2 WILD-TYPE" "VN1R2 WILD-TYPE" "VN1R2 WILD-TYPE" 
     TCGA-44-2656      TCGA-44-2657      TCGA-44-2659      TCGA-44-2661 
"VN1R2 WILD-TYPE" "VN1R2 WILD-TYPE" "VN1R2 WILD-TYPE" "VN1R2 WILD-TYPE" 
     TCGA-44-2662      TCGA-44-2665      TCGA-44-2666      TCGA-44-2668 
"VN1R2 WILD-TYPE" "VN1R2 WILD-TYPE" "VN1R2 WILD-TYPE" "VN1R2 WILD-TYPE" 
     TCGA-44-3396      TCGA-44-3398      TCGA-44-3918      TCGA-44-3919 
"VN1R2 WILD-TYPE" "VN1R2 WILD-TYPE" "VN1R2 WILD-TYPE" "VN1R2 WILD-TYPE" 
     TCGA-44-4112      TCGA-44-5643      TCGA-44-5645      TCGA-44-6144 
"VN1R2 WILD-TYPE" "VN1R2 WILD-TYPE" "VN1R2 WILD-TYPE" "VN1R2 WILD-TYPE" 
     TCGA-44-6145      TCGA-44-6146      TCGA-44-6147      TCGA-44-6148 
"VN1R2 WILD-TYPE" "VN1R2 WILD-TYPE" "VN1R2 WILD-TYPE" "VN1R2 WILD-TYPE" 
     TCGA-44-6774      TCGA-44-6775      TCGA-44-6776      TCGA-44-6777 
"VN1R2 WILD-TYPE" "VN1R2 WILD-TYPE" "VN1R2 WILD-TYPE"   "VN1R2 MUTATED" 
     TCGA-44-6778      TCGA-44-6779      TCGA-49-4486      TCGA-49-4487 
"VN1R2 WILD-TYPE" "VN1R2 WILD-TYPE" "VN1R2 WILD-TYPE" "VN1R2 WILD-TYPE" 
     TCGA-49-4488      TCGA-49-4490      TCGA-49-4494      TCGA-49-4501 
"VN1R2 WILD-TYPE" "VN1R2 WILD-TYPE" "VN1R2 WILD-TYPE" "VN1R2 WILD-TYPE" 
     TCGA-49-4505      TCGA-49-4506      TCGA-49-4507      TCGA-49-4510 
"VN1R2 WILD-TYPE" "VN1R2 WILD-TYPE" "VN1R2 WILD-TYPE" "VN1R2 WILD-TYPE" 
     TCGA-49-4512      TCGA-49-4514      TCGA-49-6742      TCGA-49-6743 
"VN1R2 WILD-TYPE" "VN1R2 WILD-TYPE" "VN1R2 WILD-TYPE" "VN1R2 WILD-TYPE" 
     TCGA-49-6744      TCGA-49-6745      TCGA-50-5044      TCGA-50-5045 
"VN1R2 WILD-TYPE" "VN1R2 WILD-TYPE" "VN1R2 WILD-TYPE" "VN1R2 WILD-TYPE" 
     TCGA-50-5049      TCGA-50-5051      TCGA-50-5055      TCGA-50-5066 
"VN1R2 WILD-TYPE" "VN1R2 WILD-TYPE" "VN1R2 WILD-TYPE" "VN1R2 WILD-TYPE" 
     TCGA-50-5068      TCGA-50-5072      TCGA-50-5930      TCGA-50-5931 
"VN1R2 WILD-TYPE"   "VN1R2 MUTATED" "VN1R2 WILD-TYPE" "VN1R2 WILD-TYPE" 
     TCGA-50-5932      TCGA-50-5933      TCGA-50-5935      TCGA-50-5936 
"VN1R2 WILD-TYPE" "VN1R2 WILD-TYPE" "VN1R2 WILD-TYPE" "VN1R2 WILD-TYPE" 
     TCGA-50-5939      TCGA-50-5941      TCGA-50-5942      TCGA-50-5944 
"VN1R2 WILD-TYPE" "VN1R2 WILD-TYPE" "VN1R2 WILD-TYPE" "VN1R2 WILD-TYPE" 
     TCGA-50-5946      TCGA-50-6590      TCGA-50-6591      TCGA-50-6592 
"VN1R2 WILD-TYPE" "VN1R2 WILD-TYPE" "VN1R2 WILD-TYPE"   "VN1R2 MUTATED" 
     TCGA-50-6593      TCGA-50-6594      TCGA-50-6595      TCGA-50-6597 
"VN1R2 WILD-TYPE" "VN1R2 WILD-TYPE" "VN1R2 WILD-TYPE" "VN1R2 WILD-TYPE" 
     TCGA-55-1592      TCGA-55-1594      TCGA-55-1595      TCGA-55-1596 
"VN1R2 WILD-TYPE" "VN1R2 WILD-TYPE" "VN1R2 WILD-TYPE" "VN1R2 WILD-TYPE" 
     TCGA-55-5899      TCGA-55-6543      TCGA-55-6642      TCGA-55-6712 
"VN1R2 WILD-TYPE" "VN1R2 WILD-TYPE" "VN1R2 WILD-TYPE" "VN1R2 WILD-TYPE" 
     TCGA-64-1676      TCGA-64-1677      TCGA-64-1678      TCGA-64-1680 
"VN1R2 WILD-TYPE" "VN1R2 WILD-TYPE" "VN1R2 WILD-TYPE" "VN1R2 WILD-TYPE" 
     TCGA-64-5774      TCGA-64-5775      TCGA-64-5778      TCGA-64-5779 
"VN1R2 WILD-TYPE" "VN1R2 WILD-TYPE" "VN1R2 WILD-TYPE" "VN1R2 WILD-TYPE" 
     TCGA-64-5781      TCGA-64-5815      TCGA-67-3770      TCGA-67-3771 
"VN1R2 WILD-TYPE" "VN1R2 WILD-TYPE" "VN1R2 WILD-TYPE" "VN1R2 WILD-TYPE" 
     TCGA-67-3772      TCGA-67-3773      TCGA-67-3774      TCGA-67-6215 
"VN1R2 WILD-TYPE" "VN1R2 WILD-TYPE" "VN1R2 WILD-TYPE" "VN1R2 WILD-TYPE" 
     TCGA-67-6216      TCGA-67-6217      TCGA-71-6725      TCGA-73-4658 
"VN1R2 WILD-TYPE" "VN1R2 WILD-TYPE" "VN1R2 WILD-TYPE" "VN1R2 WILD-TYPE" 
     TCGA-73-4659      TCGA-73-4662      TCGA-73-4666      TCGA-73-4668 
"VN1R2 WILD-TYPE" "VN1R2 WILD-TYPE" "VN1R2 WILD-TYPE" "VN1R2 WILD-TYPE" 
     TCGA-73-4670      TCGA-73-4675      TCGA-73-4676      TCGA-73-4677 
"VN1R2 WILD-TYPE" "VN1R2 WILD-TYPE" "VN1R2 WILD-TYPE" "VN1R2 WILD-TYPE" 
     TCGA-91-6828      TCGA-91-6829      TCGA-91-6831      TCGA-91-6835 
"VN1R2 WILD-TYPE" "VN1R2 WILD-TYPE" "VN1R2 WILD-TYPE" "VN1R2 WILD-TYPE" 
     TCGA-91-6836 
"VN1R2 WILD-TYPE" 
     TCGA-05-4249      TCGA-05-4250      TCGA-05-4382      TCGA-05-4384 
"VN1R2 WILD-TYPE" "VN1R2 WILD-TYPE" "VN1R2 WILD-TYPE" "VN1R2 WILD-TYPE" 
     TCGA-05-4390      TCGA-05-4396      TCGA-05-4397      TCGA-05-4398 
  "VN1R2 MUTATED" "VN1R2 WILD-TYPE" "VN1R2 WILD-TYPE" "VN1R2 WILD-TYPE" 
     TCGA-05-4402      TCGA-05-4405      TCGA-05-4415      TCGA-05-4417 
"VN1R2 WILD-TYPE" "VN1R2 WILD-TYPE" "VN1R2 WILD-TYPE" "VN1R2 WILD-TYPE" 
     TCGA-05-4418      TCGA-05-4420      TCGA-05-4424      TCGA-05-4426 
  "VN1R2 MUTATED" "VN1R2 WILD-TYPE"   "VN1R2 MUTATED" "VN1R2 WILD-TYPE" 
     TCGA-05-4427      TCGA-05-4430      TCGA-05-4432      TCGA-05-4433 
"VN1R2 WILD-TYPE" "VN1R2 WILD-TYPE" "VN1R2 WILD-TYPE" "VN1R2 WILD-TYPE" 
     TCGA-05-4434      TCGA-05-5420      TCGA-05-5423      TCGA-05-5425 
"VN1R2 WILD-TYPE" "VN1R2 WILD-TYPE" "VN1R2 WILD-TYPE" "VN1R2 WILD-TYPE" 
     TCGA-05-5429      TCGA-05-5715      TCGA-35-3615      TCGA-35-4122 
"VN1R2 WILD-TYPE" "VN1R2 WILD-TYPE" "VN1R2 WILD-TYPE" "VN1R2 WILD-TYPE" 
     TCGA-35-4123      TCGA-35-5375      TCGA-38-4625      TCGA-38-4626 
"VN1R2 WILD-TYPE" "VN1R2 WILD-TYPE" "VN1R2 WILD-TYPE" "VN1R2 WILD-TYPE" 
     TCGA-38-4627      TCGA-38-4628      TCGA-38-4629      TCGA-38-4630 
"VN1R2 WILD-TYPE" "VN1R2 WILD-TYPE" "VN1R2 WILD-TYPE" "VN1R2 WILD-TYPE" 
     TCGA-38-4631      TCGA-38-4632      TCGA-38-6178      TCGA-44-2655 
"VN1R2 WILD-TYPE" "VN1R2 WILD-TYPE" "VN1R2 WILD-TYPE" "VN1R2 WILD-TYPE" 
     TCGA-44-2656      TCGA-44-2657      TCGA-44-2659      TCGA-44-2661 
"VN1R2 WILD-TYPE" "VN1R2 WILD-TYPE" "VN1R2 WILD-TYPE" "VN1R2 WILD-TYPE" 
     TCGA-44-2662      TCGA-44-2665      TCGA-44-2666      TCGA-44-2668 
"VN1R2 WILD-TYPE" "VN1R2 WILD-TYPE" "VN1R2 WILD-TYPE" "VN1R2 WILD-TYPE" 
     TCGA-44-3396      TCGA-44-3398      TCGA-44-3918      TCGA-44-3919 
"VN1R2 WILD-TYPE" "VN1R2 WILD-TYPE" "VN1R2 WILD-TYPE" "VN1R2 WILD-TYPE" 
     TCGA-44-4112      TCGA-44-5643      TCGA-44-5645      TCGA-44-6144 
"VN1R2 WILD-TYPE" "VN1R2 WILD-TYPE" "VN1R2 WILD-TYPE" "VN1R2 WILD-TYPE" 
     TCGA-44-6145      TCGA-44-6146      TCGA-44-6147      TCGA-44-6148 
"VN1R2 WILD-TYPE" "VN1R2 WILD-TYPE" "VN1R2 WILD-TYPE" "VN1R2 WILD-TYPE" 
     TCGA-44-6774      TCGA-44-6775      TCGA-44-6776      TCGA-44-6777 
"VN1R2 WILD-TYPE" "VN1R2 WILD-TYPE" "VN1R2 WILD-TYPE"   "VN1R2 MUTATED" 
     TCGA-44-6778      TCGA-44-6779      TCGA-49-4486      TCGA-49-4487 
"VN1R2 WILD-TYPE" "VN1R2 WILD-TYPE" "VN1R2 WILD-TYPE" "VN1R2 WILD-TYPE" 
     TCGA-49-4488      TCGA-49-4490      TCGA-49-4494      TCGA-49-4501 
"VN1R2 WILD-TYPE" "VN1R2 WILD-TYPE" "VN1R2 WILD-TYPE" "VN1R2 WILD-TYPE" 
     TCGA-49-4505      TCGA-49-4506      TCGA-49-4507      TCGA-49-4510 
"VN1R2 WILD-TYPE" "VN1R2 WILD-TYPE" "VN1R2 WILD-TYPE" "VN1R2 WILD-TYPE" 
     TCGA-49-4512      TCGA-49-4514      TCGA-49-6742      TCGA-49-6743 
"VN1R2 WILD-TYPE" "VN1R2 WILD-TYPE" "VN1R2 WILD-TYPE" "VN1R2 WILD-TYPE" 
     TCGA-49-6744      TCGA-49-6745      TCGA-50-5044      TCGA-50-5045 
"VN1R2 WILD-TYPE" "VN1R2 WILD-TYPE" "VN1R2 WILD-TYPE" "VN1R2 WILD-TYPE" 
     TCGA-50-5049      TCGA-50-5051      TCGA-50-5055      TCGA-50-5066 
"VN1R2 WILD-TYPE" "VN1R2 WILD-TYPE" "VN1R2 WILD-TYPE" "VN1R2 WILD-TYPE" 
     TCGA-50-5068      TCGA-50-5072      TCGA-50-5930      TCGA-50-5931 
"VN1R2 WILD-TYPE"   "VN1R2 MUTATED" "VN1R2 WILD-TYPE" "VN1R2 WILD-TYPE" 
     TCGA-50-5932      TCGA-50-5933      TCGA-50-5935      TCGA-50-5936 
"VN1R2 WILD-TYPE" "VN1R2 WILD-TYPE" "VN1R2 WILD-TYPE" "VN1R2 WILD-TYPE" 
     TCGA-50-5939      TCGA-50-5941      TCGA-50-5942      TCGA-50-5944 
"VN1R2 WILD-TYPE" "VN1R2 WILD-TYPE" "VN1R2 WILD-TYPE" "VN1R2 WILD-TYPE" 
     TCGA-50-5946      TCGA-50-6590      TCGA-50-6591      TCGA-50-6592 
"VN1R2 WILD-TYPE" "VN1R2 WILD-TYPE" "VN1R2 WILD-TYPE"   "VN1R2 MUTATED" 
     TCGA-50-6593      TCGA-50-6594      TCGA-50-6595      TCGA-50-6597 
"VN1R2 WILD-TYPE" "VN1R2 WILD-TYPE" "VN1R2 WILD-TYPE" "VN1R2 WILD-TYPE" 
     TCGA-55-1592      TCGA-55-1594      TCGA-55-1595      TCGA-55-1596 
"VN1R2 WILD-TYPE" "VN1R2 WILD-TYPE" "VN1R2 WILD-TYPE" "VN1R2 WILD-TYPE" 
     TCGA-55-5899      TCGA-55-6543      TCGA-55-6642      TCGA-55-6712 
"VN1R2 WILD-TYPE" "VN1R2 WILD-TYPE" "VN1R2 WILD-TYPE" "VN1R2 WILD-TYPE" 
     TCGA-64-1676      TCGA-64-1677      TCGA-64-1678      TCGA-64-1680 
"VN1R2 WILD-TYPE" "VN1R2 WILD-TYPE" "VN1R2 WILD-TYPE" "VN1R2 WILD-TYPE" 
     TCGA-64-5774      TCGA-64-5775      TCGA-64-5778      TCGA-64-5779 
"VN1R2 WILD-TYPE" "VN1R2 WILD-TYPE" "VN1R2 WILD-TYPE" "VN1R2 WILD-TYPE" 
     TCGA-64-5781      TCGA-64-5815      TCGA-67-3770      TCGA-67-3771 
"VN1R2 WILD-TYPE" "VN1R2 WILD-TYPE" "VN1R2 WILD-TYPE" "VN1R2 WILD-TYPE" 
     TCGA-67-3772      TCGA-67-3773      TCGA-67-3774      TCGA-67-6215 
"VN1R2 WILD-TYPE" "VN1R2 WILD-TYPE" "VN1R2 WILD-TYPE" "VN1R2 WILD-TYPE" 
     TCGA-67-6216      TCGA-67-6217      TCGA-71-6725      TCGA-73-4658 
"VN1R2 WILD-TYPE" "VN1R2 WILD-TYPE" "VN1R2 WILD-TYPE" "VN1R2 WILD-TYPE" 
     TCGA-73-4659      TCGA-73-4662      TCGA-73-4666      TCGA-73-4668 
"VN1R2 WILD-TYPE" "VN1R2 WILD-TYPE" "VN1R2 WILD-TYPE" "VN1R2 WILD-TYPE" 
     TCGA-73-4670      TCGA-73-4675      TCGA-73-4676      TCGA-73-4677 
"VN1R2 WILD-TYPE" "VN1R2 WILD-TYPE" "VN1R2 WILD-TYPE" "VN1R2 WILD-TYPE" 
     TCGA-91-6828      TCGA-91-6829      TCGA-91-6831      TCGA-91-6835 
"VN1R2 WILD-TYPE" "VN1R2 WILD-TYPE" "VN1R2 WILD-TYPE" "VN1R2 WILD-TYPE" 
     TCGA-91-6836 
"VN1R2 WILD-TYPE" 
     TCGA-05-4249      TCGA-05-4250      TCGA-05-4382      TCGA-05-4384 
"VN1R2 WILD-TYPE" "VN1R2 WILD-TYPE" "VN1R2 WILD-TYPE" "VN1R2 WILD-TYPE" 
     TCGA-05-4390      TCGA-05-4396      TCGA-05-4397      TCGA-05-4398 
  "VN1R2 MUTATED" "VN1R2 WILD-TYPE" "VN1R2 WILD-TYPE" "VN1R2 WILD-TYPE" 
     TCGA-05-4402      TCGA-05-4405      TCGA-05-4415      TCGA-05-4417 
"VN1R2 WILD-TYPE" "VN1R2 WILD-TYPE" "VN1R2 WILD-TYPE" "VN1R2 WILD-TYPE" 
     TCGA-05-4418      TCGA-05-4420      TCGA-05-4424      TCGA-05-4426 
  "VN1R2 MUTATED" "VN1R2 WILD-TYPE"   "VN1R2 MUTATED" "VN1R2 WILD-TYPE" 
     TCGA-05-4427      TCGA-05-4430      TCGA-05-4432      TCGA-05-4433 
"VN1R2 WILD-TYPE" "VN1R2 WILD-TYPE" "VN1R2 WILD-TYPE" "VN1R2 WILD-TYPE" 
     TCGA-05-4434      TCGA-05-5420      TCGA-05-5423      TCGA-05-5425 
"VN1R2 WILD-TYPE" "VN1R2 WILD-TYPE" "VN1R2 WILD-TYPE" "VN1R2 WILD-TYPE" 
     TCGA-05-5429      TCGA-05-5715      TCGA-35-3615      TCGA-35-4122 
"VN1R2 WILD-TYPE" "VN1R2 WILD-TYPE" "VN1R2 WILD-TYPE" "VN1R2 WILD-TYPE" 
     TCGA-35-4123      TCGA-35-5375      TCGA-38-4625      TCGA-38-4626 
"VN1R2 WILD-TYPE" "VN1R2 WILD-TYPE" "VN1R2 WILD-TYPE" "VN1R2 WILD-TYPE" 
     TCGA-38-4627      TCGA-38-4628      TCGA-38-4629      TCGA-38-4630 
"VN1R2 WILD-TYPE" "VN1R2 WILD-TYPE" "VN1R2 WILD-TYPE" "VN1R2 WILD-TYPE" 
     TCGA-38-4631      TCGA-38-4632      TCGA-38-6178      TCGA-44-2655 
"VN1R2 WILD-TYPE" "VN1R2 WILD-TYPE" "VN1R2 WILD-TYPE" "VN1R2 WILD-TYPE" 
     TCGA-44-2656      TCGA-44-2657      TCGA-44-2659      TCGA-44-2661 
"VN1R2 WILD-TYPE" "VN1R2 WILD-TYPE" "VN1R2 WILD-TYPE" "VN1R2 WILD-TYPE" 
     TCGA-44-2662      TCGA-44-2665      TCGA-44-2666      TCGA-44-2668 
"VN1R2 WILD-TYPE" "VN1R2 WILD-TYPE" "VN1R2 WILD-TYPE" "VN1R2 WILD-TYPE" 
     TCGA-44-3396      TCGA-44-3398      TCGA-44-3918      TCGA-44-3919 
"VN1R2 WILD-TYPE" "VN1R2 WILD-TYPE" "VN1R2 WILD-TYPE" "VN1R2 WILD-TYPE" 
     TCGA-44-4112      TCGA-44-5643      TCGA-44-5645      TCGA-44-6144 
"VN1R2 WILD-TYPE" "VN1R2 WILD-TYPE" "VN1R2 WILD-TYPE" "VN1R2 WILD-TYPE" 
     TCGA-44-6145      TCGA-44-6146      TCGA-44-6147      TCGA-44-6148 
"VN1R2 WILD-TYPE" "VN1R2 WILD-TYPE" "VN1R2 WILD-TYPE" "VN1R2 WILD-TYPE" 
     TCGA-44-6774      TCGA-44-6775      TCGA-44-6776      TCGA-44-6777 
"VN1R2 WILD-TYPE" "VN1R2 WILD-TYPE" "VN1R2 WILD-TYPE"   "VN1R2 MUTATED" 
     TCGA-44-6778      TCGA-44-6779      TCGA-49-4486      TCGA-49-4487 
"VN1R2 WILD-TYPE" "VN1R2 WILD-TYPE" "VN1R2 WILD-TYPE" "VN1R2 WILD-TYPE" 
     TCGA-49-4488      TCGA-49-4490      TCGA-49-4494      TCGA-49-4501 
"VN1R2 WILD-TYPE" "VN1R2 WILD-TYPE" "VN1R2 WILD-TYPE" "VN1R2 WILD-TYPE" 
     TCGA-49-4505      TCGA-49-4506      TCGA-49-4507      TCGA-49-4510 
"VN1R2 WILD-TYPE" "VN1R2 WILD-TYPE" "VN1R2 WILD-TYPE" "VN1R2 WILD-TYPE" 
     TCGA-49-4512      TCGA-49-4514      TCGA-49-6742      TCGA-49-6743 
"VN1R2 WILD-TYPE" "VN1R2 WILD-TYPE" "VN1R2 WILD-TYPE" "VN1R2 WILD-TYPE" 
     TCGA-49-6744      TCGA-49-6745      TCGA-50-5044      TCGA-50-5045 
"VN1R2 WILD-TYPE" "VN1R2 WILD-TYPE" "VN1R2 WILD-TYPE" "VN1R2 WILD-TYPE" 
     TCGA-50-5049      TCGA-50-5051      TCGA-50-5055      TCGA-50-5066 
"VN1R2 WILD-TYPE" "VN1R2 WILD-TYPE" "VN1R2 WILD-TYPE" "VN1R2 WILD-TYPE" 
     TCGA-50-5068      TCGA-50-5072      TCGA-50-5930      TCGA-50-5931 
"VN1R2 WILD-TYPE"   "VN1R2 MUTATED" "VN1R2 WILD-TYPE" "VN1R2 WILD-TYPE" 
     TCGA-50-5932      TCGA-50-5933      TCGA-50-5935      TCGA-50-5936 
"VN1R2 WILD-TYPE" "VN1R2 WILD-TYPE" "VN1R2 WILD-TYPE" "VN1R2 WILD-TYPE" 
     TCGA-50-5939      TCGA-50-5941      TCGA-50-5942      TCGA-50-5944 
"VN1R2 WILD-TYPE" "VN1R2 WILD-TYPE" "VN1R2 WILD-TYPE" "VN1R2 WILD-TYPE" 
     TCGA-50-5946      TCGA-50-6590      TCGA-50-6591      TCGA-50-6592 
"VN1R2 WILD-TYPE" "VN1R2 WILD-TYPE" "VN1R2 WILD-TYPE"   "VN1R2 MUTATED" 
     TCGA-50-6593      TCGA-50-6594      TCGA-50-6595      TCGA-50-6597 
"VN1R2 WILD-TYPE" "VN1R2 WILD-TYPE" "VN1R2 WILD-TYPE" "VN1R2 WILD-TYPE" 
     TCGA-55-1592      TCGA-55-1594      TCGA-55-1595      TCGA-55-1596 
"VN1R2 WILD-TYPE" "VN1R2 WILD-TYPE" "VN1R2 WILD-TYPE" "VN1R2 WILD-TYPE" 
     TCGA-55-5899      TCGA-55-6543      TCGA-55-6642      TCGA-55-6712 
"VN1R2 WILD-TYPE" "VN1R2 WILD-TYPE" "VN1R2 WILD-TYPE" "VN1R2 WILD-TYPE" 
     TCGA-64-1676      TCGA-64-1677      TCGA-64-1678      TCGA-64-1680 
"VN1R2 WILD-TYPE" "VN1R2 WILD-TYPE" "VN1R2 WILD-TYPE" "VN1R2 WILD-TYPE" 
     TCGA-64-5774      TCGA-64-5775      TCGA-64-5778      TCGA-64-5779 
"VN1R2 WILD-TYPE" "VN1R2 WILD-TYPE" "VN1R2 WILD-TYPE" "VN1R2 WILD-TYPE" 
     TCGA-64-5781      TCGA-64-5815      TCGA-67-3770      TCGA-67-3771 
"VN1R2 WILD-TYPE" "VN1R2 WILD-TYPE" "VN1R2 WILD-TYPE" "VN1R2 WILD-TYPE" 
     TCGA-67-3772      TCGA-67-3773      TCGA-67-3774      TCGA-67-6215 
"VN1R2 WILD-TYPE" "VN1R2 WILD-TYPE" "VN1R2 WILD-TYPE" "VN1R2 WILD-TYPE" 
     TCGA-67-6216      TCGA-67-6217      TCGA-71-6725      TCGA-73-4658 
"VN1R2 WILD-TYPE" "VN1R2 WILD-TYPE" "VN1R2 WILD-TYPE" "VN1R2 WILD-TYPE" 
     TCGA-73-4659      TCGA-73-4662      TCGA-73-4666      TCGA-73-4668 
"VN1R2 WILD-TYPE" "VN1R2 WILD-TYPE" "VN1R2 WILD-TYPE" "VN1R2 WILD-TYPE" 
     TCGA-73-4670      TCGA-73-4675      TCGA-73-4676      TCGA-73-4677 
"VN1R2 WILD-TYPE" "VN1R2 WILD-TYPE" "VN1R2 WILD-TYPE" "VN1R2 WILD-TYPE" 
     TCGA-91-6828      TCGA-91-6829      TCGA-91-6831      TCGA-91-6835 
"VN1R2 WILD-TYPE" "VN1R2 WILD-TYPE" "VN1R2 WILD-TYPE" "VN1R2 WILD-TYPE" 
     TCGA-91-6836 
"VN1R2 WILD-TYPE" 
[1] "hr=" "1.4"
D89V2, continuous
D89V3, binary
[1] "tbl2"
                 cls
clus              [,1] [,2]
  VN1R2 MUTATED      3    4
  VN1R2 WILD-TYPE   90   75
        clus
vv       VN1R2 MUTATED VN1R2 WILD-TYPE
  FEMALE             3              90
  MALE               4              75
D89V4, continuous
D89V5, multiclass
D89V6, multiclass
    clus
vv   VN1R2 MUTATED VN1R2 WILD-TYPE
  T1             0              41
  T2             5             103
  T3             2              12
  T4             0               8
D89V7, multiclass
       clus
vv      VN1R2 MUTATED VN1R2 WILD-TYPE
  N0                4              91
  N1                0              37
  N2+N3             2              33
D89V8, multiclass
    clus
vv   VN1R2 MUTATED VN1R2 WILD-TYPE
  M0             6             131
  M1             0               9
  MX             1              21
D89V9, multiclass
     clus
vv    VN1R2 MUTATED VN1R2 WILD-TYPE
  I               4              84
  II              1              32
  III             2              37
  IV              0               9
D89V10, binary
[1] "tbl2"
                 cls
clus              [,1] [,2]
  VN1R2 MUTATED      2    5
  VN1R2 WILD-TYPE   14  151
     clus
vv    VN1R2 MUTATED VN1R2 WILD-TYPE
  NO              2              14
  YES             5             151
D89V11, continuous
D89V12, continuous
D89V13, multiclass
                                             clus
vv                                            VN1R2 MUTATED VN1R2 WILD-TYPE
  CURRENT REFORMED SMOKER FOR < OR = 15 YEARS             5              57
  CURRENT REFORMED SMOKER FOR > 15 YEARS                  1              45
  CURRENT SMOKER                                          1              27
  LIFELONG NON-SMOKER                                     0              24
D89V14, continuous

Clustering(90) Variable = OR2T3 MUTATION ANALYSIS
D90V1, survival
                 sevent
clus2              0  1
  OR2T3 MUTATED    6  1
  OR2T3 WILD-TYPE 93 49
  OR2T3 MUTATED OR2T3 WILD-TYPE 
              7             142 
  OR2T3 MUTATED OR2T3 WILD-TYPE 
              1              49 
$`OR2T3 MUTATED`
TCGA-05-4417 TCGA-05-4432 TCGA-38-4629 TCGA-50-5049 TCGA-55-1596 TCGA-55-5899 
       14.93        25.02        28.37        48.82        45.17         2.86 
TCGA-64-5778 
       30.44 

$`OR2T3 WILD-TYPE`
TCGA-05-4249 TCGA-05-4250 TCGA-05-4382 TCGA-05-4384 TCGA-05-4390 TCGA-05-4396 
       38.07         3.98        19.92        14.01        37.02         9.96 
TCGA-05-4397 TCGA-05-4398 TCGA-05-4402 TCGA-05-4405 TCGA-05-4415 TCGA-05-4418 
       24.03        47.05         8.02        20.05         2.96         8.98 
TCGA-05-4420 TCGA-05-4424 TCGA-05-4426 TCGA-05-4427 TCGA-05-4430 TCGA-05-4433 
       29.95        30.02        26.01        26.01        25.02        24.00 
TCGA-05-4434 TCGA-05-5420 TCGA-05-5423 TCGA-05-5425 TCGA-05-5429 TCGA-05-5715 
       15.02         1.02         4.96         2.96         0.99         2.04 
TCGA-35-3615 TCGA-35-4122 TCGA-35-4123 TCGA-35-5375 TCGA-38-4625 TCGA-38-4626 
        0.46         7.36         5.95         8.68        47.61        85.32 
TCGA-38-4627 TCGA-38-4628 TCGA-38-4630 TCGA-38-4631 TCGA-38-4632 TCGA-38-6178 
       37.71        49.02        35.28        11.64        44.61         5.19 
TCGA-44-2655 TCGA-44-2656 TCGA-44-2657 TCGA-44-2659 TCGA-44-2661 TCGA-44-2662 
       18.87        19.10        13.15        17.39         3.39        15.78 
TCGA-44-2665 TCGA-44-2666 TCGA-44-2668 TCGA-44-3396 TCGA-44-3398 TCGA-44-3918 
       13.15         3.19         8.09        10.22         8.32         6.44 
TCGA-44-3919 TCGA-44-4112 TCGA-44-5643 TCGA-44-5645 TCGA-44-6144 TCGA-44-6145 
        6.21         4.60         3.48         6.84         0.30         3.35 
TCGA-44-6146 TCGA-44-6147 TCGA-44-6148 TCGA-44-6774 TCGA-44-6775 TCGA-44-6776 
        9.93         7.76         3.12         5.42         2.70        63.72 
TCGA-44-6777 TCGA-44-6778 TCGA-44-6779 TCGA-49-4486 TCGA-49-4487 TCGA-49-4488 
       32.45        36.49        16.41        76.21        28.11        28.57 
TCGA-49-4490 TCGA-49-4494 TCGA-49-4501 TCGA-49-4505 TCGA-49-4506 TCGA-49-4507 
       12.66        35.54        46.72        14.07        32.84         8.81 
TCGA-49-4510 TCGA-49-4512 TCGA-49-4514 TCGA-49-6742 TCGA-49-6743 TCGA-49-6744 
       29.46        29.75        43.20        15.02        12.13        12.99 
TCGA-49-6745 TCGA-50-5044 TCGA-50-5045 TCGA-50-5051 TCGA-50-5055 TCGA-50-5066 
        4.93        20.48        71.47        14.96        25.81         9.76 
TCGA-50-5068 TCGA-50-5072 TCGA-50-5930 TCGA-50-5931 TCGA-50-5932 TCGA-50-5933 
       49.28         8.05         9.27         8.78        35.87        77.88 
TCGA-50-5935 TCGA-50-5936 TCGA-50-5939 TCGA-50-5941 TCGA-50-5942 TCGA-50-5944 
       21.47         8.45        15.12         9.37         4.44        12.26 
TCGA-50-5946 TCGA-50-6590 TCGA-50-6591 TCGA-50-6592 TCGA-50-6593 TCGA-50-6594 
       11.47        42.31         3.88        25.51        11.05        12.16 
TCGA-50-6595 TCGA-50-6597 TCGA-55-1592 TCGA-55-1594 TCGA-55-1595 TCGA-55-6543 
        6.21        33.37        23.05        38.73        48.62         0.07 
TCGA-55-6642 TCGA-55-6712 TCGA-64-1676 TCGA-64-1677 TCGA-64-1678 TCGA-64-1680 
       32.61         0.79        56.81        20.65        39.09        37.02 
TCGA-64-5774 TCGA-64-5775 TCGA-64-5779 TCGA-64-5781 TCGA-64-5815 TCGA-67-3770 
       83.84         0.10        16.67        39.52         7.33         0.99 
TCGA-67-3771 TCGA-67-3772 TCGA-67-3773 TCGA-67-3774 TCGA-67-6215 TCGA-67-6216 
        1.97         0.59         2.04         0.59         0.89         0.69 
TCGA-67-6217 TCGA-71-6725 TCGA-73-4658 TCGA-73-4659 TCGA-73-4662 TCGA-73-4666 
       13.87         2.01        52.57        23.38        29.95        20.28 
TCGA-73-4668 TCGA-73-4670 TCGA-73-4675 TCGA-73-4676 TCGA-73-4677 TCGA-91-6828 
       15.35         0.46         1.32         4.01         1.25         1.22 
TCGA-91-6829 TCGA-91-6831 TCGA-91-6835 TCGA-91-6836 
       41.33         1.28         1.15         0.36 

  OR2T3 MUTATED OR2T3 WILD-TYPE 
           2.86            0.07 
  OR2T3 MUTATED OR2T3 WILD-TYPE 
          48.82           85.32 
  OR2T3 MUTATED OR2T3 WILD-TYPE 
          28.37           13.07 
[1] "2.9 - 48.8 (28.4)" "0.1 - 85.3 (13.1)"
     TCGA-05-4249      TCGA-05-4250      TCGA-05-4382      TCGA-05-4384 
"OR2T3 WILD-TYPE" "OR2T3 WILD-TYPE" "OR2T3 WILD-TYPE" "OR2T3 WILD-TYPE" 
     TCGA-05-4390      TCGA-05-4396      TCGA-05-4397      TCGA-05-4398 
"OR2T3 WILD-TYPE" "OR2T3 WILD-TYPE" "OR2T3 WILD-TYPE" "OR2T3 WILD-TYPE" 
     TCGA-05-4402      TCGA-05-4405      TCGA-05-4415      TCGA-05-4417 
"OR2T3 WILD-TYPE" "OR2T3 WILD-TYPE" "OR2T3 WILD-TYPE"   "OR2T3 MUTATED" 
     TCGA-05-4418      TCGA-05-4420      TCGA-05-4424      TCGA-05-4426 
"OR2T3 WILD-TYPE" "OR2T3 WILD-TYPE" "OR2T3 WILD-TYPE" "OR2T3 WILD-TYPE" 
     TCGA-05-4427      TCGA-05-4430      TCGA-05-4432      TCGA-05-4433 
"OR2T3 WILD-TYPE" "OR2T3 WILD-TYPE"   "OR2T3 MUTATED" "OR2T3 WILD-TYPE" 
     TCGA-05-4434      TCGA-05-5420      TCGA-05-5423      TCGA-05-5425 
"OR2T3 WILD-TYPE" "OR2T3 WILD-TYPE" "OR2T3 WILD-TYPE" "OR2T3 WILD-TYPE" 
     TCGA-05-5429      TCGA-05-5715      TCGA-35-3615      TCGA-35-4122 
"OR2T3 WILD-TYPE" "OR2T3 WILD-TYPE" "OR2T3 WILD-TYPE" "OR2T3 WILD-TYPE" 
     TCGA-35-4123      TCGA-35-5375      TCGA-38-4625      TCGA-38-4626 
"OR2T3 WILD-TYPE" "OR2T3 WILD-TYPE" "OR2T3 WILD-TYPE" "OR2T3 WILD-TYPE" 
     TCGA-38-4627      TCGA-38-4628      TCGA-38-4629      TCGA-38-4630 
"OR2T3 WILD-TYPE" "OR2T3 WILD-TYPE"   "OR2T3 MUTATED" "OR2T3 WILD-TYPE" 
     TCGA-38-4631      TCGA-38-4632      TCGA-38-6178      TCGA-44-2655 
"OR2T3 WILD-TYPE" "OR2T3 WILD-TYPE" "OR2T3 WILD-TYPE" "OR2T3 WILD-TYPE" 
     TCGA-44-2656      TCGA-44-2657      TCGA-44-2659      TCGA-44-2661 
"OR2T3 WILD-TYPE" "OR2T3 WILD-TYPE" "OR2T3 WILD-TYPE" "OR2T3 WILD-TYPE" 
     TCGA-44-2662      TCGA-44-2665      TCGA-44-2666      TCGA-44-2668 
"OR2T3 WILD-TYPE" "OR2T3 WILD-TYPE" "OR2T3 WILD-TYPE" "OR2T3 WILD-TYPE" 
     TCGA-44-3396      TCGA-44-3398      TCGA-44-3918      TCGA-44-3919 
"OR2T3 WILD-TYPE" "OR2T3 WILD-TYPE" "OR2T3 WILD-TYPE" "OR2T3 WILD-TYPE" 
     TCGA-44-4112      TCGA-44-5643      TCGA-44-5645      TCGA-44-6144 
"OR2T3 WILD-TYPE" "OR2T3 WILD-TYPE" "OR2T3 WILD-TYPE" "OR2T3 WILD-TYPE" 
     TCGA-44-6145      TCGA-44-6146      TCGA-44-6147      TCGA-44-6148 
"OR2T3 WILD-TYPE" "OR2T3 WILD-TYPE" "OR2T3 WILD-TYPE" "OR2T3 WILD-TYPE" 
     TCGA-44-6774      TCGA-44-6775      TCGA-44-6776      TCGA-44-6777 
"OR2T3 WILD-TYPE" "OR2T3 WILD-TYPE" "OR2T3 WILD-TYPE" "OR2T3 WILD-TYPE" 
     TCGA-44-6778      TCGA-44-6779      TCGA-49-4486      TCGA-49-4487 
"OR2T3 WILD-TYPE" "OR2T3 WILD-TYPE" "OR2T3 WILD-TYPE" "OR2T3 WILD-TYPE" 
     TCGA-49-4488      TCGA-49-4490      TCGA-49-4494      TCGA-49-4501 
"OR2T3 WILD-TYPE" "OR2T3 WILD-TYPE" "OR2T3 WILD-TYPE" "OR2T3 WILD-TYPE" 
     TCGA-49-4505      TCGA-49-4506      TCGA-49-4507      TCGA-49-4510 
"OR2T3 WILD-TYPE" "OR2T3 WILD-TYPE" "OR2T3 WILD-TYPE" "OR2T3 WILD-TYPE" 
     TCGA-49-4512      TCGA-49-4514      TCGA-49-6742      TCGA-49-6743 
"OR2T3 WILD-TYPE" "OR2T3 WILD-TYPE" "OR2T3 WILD-TYPE" "OR2T3 WILD-TYPE" 
     TCGA-49-6744      TCGA-49-6745      TCGA-50-5044      TCGA-50-5045 
"OR2T3 WILD-TYPE" "OR2T3 WILD-TYPE" "OR2T3 WILD-TYPE" "OR2T3 WILD-TYPE" 
     TCGA-50-5049      TCGA-50-5051      TCGA-50-5055      TCGA-50-5066 
  "OR2T3 MUTATED" "OR2T3 WILD-TYPE" "OR2T3 WILD-TYPE" "OR2T3 WILD-TYPE" 
     TCGA-50-5068      TCGA-50-5072      TCGA-50-5930      TCGA-50-5931 
"OR2T3 WILD-TYPE" "OR2T3 WILD-TYPE" "OR2T3 WILD-TYPE" "OR2T3 WILD-TYPE" 
     TCGA-50-5932      TCGA-50-5933      TCGA-50-5935      TCGA-50-5936 
"OR2T3 WILD-TYPE" "OR2T3 WILD-TYPE" "OR2T3 WILD-TYPE" "OR2T3 WILD-TYPE" 
     TCGA-50-5939      TCGA-50-5941      TCGA-50-5942      TCGA-50-5944 
"OR2T3 WILD-TYPE" "OR2T3 WILD-TYPE" "OR2T3 WILD-TYPE" "OR2T3 WILD-TYPE" 
     TCGA-50-5946      TCGA-50-6590      TCGA-50-6591      TCGA-50-6592 
"OR2T3 WILD-TYPE" "OR2T3 WILD-TYPE" "OR2T3 WILD-TYPE" "OR2T3 WILD-TYPE" 
     TCGA-50-6593      TCGA-50-6594      TCGA-50-6595      TCGA-50-6597 
"OR2T3 WILD-TYPE" "OR2T3 WILD-TYPE" "OR2T3 WILD-TYPE" "OR2T3 WILD-TYPE" 
     TCGA-55-1592      TCGA-55-1594      TCGA-55-1595      TCGA-55-1596 
"OR2T3 WILD-TYPE" "OR2T3 WILD-TYPE" "OR2T3 WILD-TYPE"   "OR2T3 MUTATED" 
     TCGA-55-5899      TCGA-55-6543      TCGA-55-6642      TCGA-55-6712 
  "OR2T3 MUTATED" "OR2T3 WILD-TYPE" "OR2T3 WILD-TYPE" "OR2T3 WILD-TYPE" 
     TCGA-64-1676      TCGA-64-1677      TCGA-64-1678      TCGA-64-1680 
"OR2T3 WILD-TYPE" "OR2T3 WILD-TYPE" "OR2T3 WILD-TYPE" "OR2T3 WILD-TYPE" 
     TCGA-64-5774      TCGA-64-5775      TCGA-64-5778      TCGA-64-5779 
"OR2T3 WILD-TYPE" "OR2T3 WILD-TYPE"   "OR2T3 MUTATED" "OR2T3 WILD-TYPE" 
     TCGA-64-5781      TCGA-64-5815      TCGA-67-3770      TCGA-67-3771 
"OR2T3 WILD-TYPE" "OR2T3 WILD-TYPE" "OR2T3 WILD-TYPE" "OR2T3 WILD-TYPE" 
     TCGA-67-3772      TCGA-67-3773      TCGA-67-3774      TCGA-67-6215 
"OR2T3 WILD-TYPE" "OR2T3 WILD-TYPE" "OR2T3 WILD-TYPE" "OR2T3 WILD-TYPE" 
     TCGA-67-6216      TCGA-67-6217      TCGA-71-6725      TCGA-73-4658 
"OR2T3 WILD-TYPE" "OR2T3 WILD-TYPE" "OR2T3 WILD-TYPE" "OR2T3 WILD-TYPE" 
     TCGA-73-4659      TCGA-73-4662      TCGA-73-4666      TCGA-73-4668 
"OR2T3 WILD-TYPE" "OR2T3 WILD-TYPE" "OR2T3 WILD-TYPE" "OR2T3 WILD-TYPE" 
     TCGA-73-4670      TCGA-73-4675      TCGA-73-4676      TCGA-73-4677 
"OR2T3 WILD-TYPE" "OR2T3 WILD-TYPE" "OR2T3 WILD-TYPE" "OR2T3 WILD-TYPE" 
     TCGA-91-6828      TCGA-91-6829      TCGA-91-6831      TCGA-91-6835 
"OR2T3 WILD-TYPE" "OR2T3 WILD-TYPE" "OR2T3 WILD-TYPE" "OR2T3 WILD-TYPE" 
     TCGA-91-6836 
"OR2T3 WILD-TYPE" 
     TCGA-05-4249      TCGA-05-4250      TCGA-05-4382      TCGA-05-4384 
"OR2T3 WILD-TYPE" "OR2T3 WILD-TYPE" "OR2T3 WILD-TYPE" "OR2T3 WILD-TYPE" 
     TCGA-05-4390      TCGA-05-4396      TCGA-05-4397      TCGA-05-4398 
"OR2T3 WILD-TYPE" "OR2T3 WILD-TYPE" "OR2T3 WILD-TYPE" "OR2T3 WILD-TYPE" 
     TCGA-05-4402      TCGA-05-4405      TCGA-05-4415      TCGA-05-4417 
"OR2T3 WILD-TYPE" "OR2T3 WILD-TYPE" "OR2T3 WILD-TYPE"   "OR2T3 MUTATED" 
     TCGA-05-4418      TCGA-05-4420      TCGA-05-4424      TCGA-05-4426 
"OR2T3 WILD-TYPE" "OR2T3 WILD-TYPE" "OR2T3 WILD-TYPE" "OR2T3 WILD-TYPE" 
     TCGA-05-4427      TCGA-05-4430      TCGA-05-4432      TCGA-05-4433 
"OR2T3 WILD-TYPE" "OR2T3 WILD-TYPE"   "OR2T3 MUTATED" "OR2T3 WILD-TYPE" 
     TCGA-05-4434      TCGA-05-5420      TCGA-05-5423      TCGA-05-5425 
"OR2T3 WILD-TYPE" "OR2T3 WILD-TYPE" "OR2T3 WILD-TYPE" "OR2T3 WILD-TYPE" 
     TCGA-05-5429      TCGA-05-5715      TCGA-35-3615      TCGA-35-4122 
"OR2T3 WILD-TYPE" "OR2T3 WILD-TYPE" "OR2T3 WILD-TYPE" "OR2T3 WILD-TYPE" 
     TCGA-35-4123      TCGA-35-5375      TCGA-38-4625      TCGA-38-4626 
"OR2T3 WILD-TYPE" "OR2T3 WILD-TYPE" "OR2T3 WILD-TYPE" "OR2T3 WILD-TYPE" 
     TCGA-38-4627      TCGA-38-4628      TCGA-38-4629      TCGA-38-4630 
"OR2T3 WILD-TYPE" "OR2T3 WILD-TYPE"   "OR2T3 MUTATED" "OR2T3 WILD-TYPE" 
     TCGA-38-4631      TCGA-38-4632      TCGA-38-6178      TCGA-44-2655 
"OR2T3 WILD-TYPE" "OR2T3 WILD-TYPE" "OR2T3 WILD-TYPE" "OR2T3 WILD-TYPE" 
     TCGA-44-2656      TCGA-44-2657      TCGA-44-2659      TCGA-44-2661 
"OR2T3 WILD-TYPE" "OR2T3 WILD-TYPE" "OR2T3 WILD-TYPE" "OR2T3 WILD-TYPE" 
     TCGA-44-2662      TCGA-44-2665      TCGA-44-2666      TCGA-44-2668 
"OR2T3 WILD-TYPE" "OR2T3 WILD-TYPE" "OR2T3 WILD-TYPE" "OR2T3 WILD-TYPE" 
     TCGA-44-3396      TCGA-44-3398      TCGA-44-3918      TCGA-44-3919 
"OR2T3 WILD-TYPE" "OR2T3 WILD-TYPE" "OR2T3 WILD-TYPE" "OR2T3 WILD-TYPE" 
     TCGA-44-4112      TCGA-44-5643      TCGA-44-5645      TCGA-44-6144 
"OR2T3 WILD-TYPE" "OR2T3 WILD-TYPE" "OR2T3 WILD-TYPE" "OR2T3 WILD-TYPE" 
     TCGA-44-6145      TCGA-44-6146      TCGA-44-6147      TCGA-44-6148 
"OR2T3 WILD-TYPE" "OR2T3 WILD-TYPE" "OR2T3 WILD-TYPE" "OR2T3 WILD-TYPE" 
     TCGA-44-6774      TCGA-44-6775      TCGA-44-6776      TCGA-44-6777 
"OR2T3 WILD-TYPE" "OR2T3 WILD-TYPE" "OR2T3 WILD-TYPE" "OR2T3 WILD-TYPE" 
     TCGA-44-6778      TCGA-44-6779      TCGA-49-4486      TCGA-49-4487 
"OR2T3 WILD-TYPE" "OR2T3 WILD-TYPE" "OR2T3 WILD-TYPE" "OR2T3 WILD-TYPE" 
     TCGA-49-4488      TCGA-49-4490      TCGA-49-4494      TCGA-49-4501 
"OR2T3 WILD-TYPE" "OR2T3 WILD-TYPE" "OR2T3 WILD-TYPE" "OR2T3 WILD-TYPE" 
     TCGA-49-4505      TCGA-49-4506      TCGA-49-4507      TCGA-49-4510 
"OR2T3 WILD-TYPE" "OR2T3 WILD-TYPE" "OR2T3 WILD-TYPE" "OR2T3 WILD-TYPE" 
     TCGA-49-4512      TCGA-49-4514      TCGA-49-6742      TCGA-49-6743 
"OR2T3 WILD-TYPE" "OR2T3 WILD-TYPE" "OR2T3 WILD-TYPE" "OR2T3 WILD-TYPE" 
     TCGA-49-6744      TCGA-49-6745      TCGA-50-5044      TCGA-50-5045 
"OR2T3 WILD-TYPE" "OR2T3 WILD-TYPE" "OR2T3 WILD-TYPE" "OR2T3 WILD-TYPE" 
     TCGA-50-5049      TCGA-50-5051      TCGA-50-5055      TCGA-50-5066 
  "OR2T3 MUTATED" "OR2T3 WILD-TYPE" "OR2T3 WILD-TYPE" "OR2T3 WILD-TYPE" 
     TCGA-50-5068      TCGA-50-5072      TCGA-50-5930      TCGA-50-5931 
"OR2T3 WILD-TYPE" "OR2T3 WILD-TYPE" "OR2T3 WILD-TYPE" "OR2T3 WILD-TYPE" 
     TCGA-50-5932      TCGA-50-5933      TCGA-50-5935      TCGA-50-5936 
"OR2T3 WILD-TYPE" "OR2T3 WILD-TYPE" "OR2T3 WILD-TYPE" "OR2T3 WILD-TYPE" 
     TCGA-50-5939      TCGA-50-5941      TCGA-50-5942      TCGA-50-5944 
"OR2T3 WILD-TYPE" "OR2T3 WILD-TYPE" "OR2T3 WILD-TYPE" "OR2T3 WILD-TYPE" 
     TCGA-50-5946      TCGA-50-6590      TCGA-50-6591      TCGA-50-6592 
"OR2T3 WILD-TYPE" "OR2T3 WILD-TYPE" "OR2T3 WILD-TYPE" "OR2T3 WILD-TYPE" 
     TCGA-50-6593      TCGA-50-6594      TCGA-50-6595      TCGA-50-6597 
"OR2T3 WILD-TYPE" "OR2T3 WILD-TYPE" "OR2T3 WILD-TYPE" "OR2T3 WILD-TYPE" 
     TCGA-55-1592      TCGA-55-1594      TCGA-55-1595      TCGA-55-1596 
"OR2T3 WILD-TYPE" "OR2T3 WILD-TYPE" "OR2T3 WILD-TYPE"   "OR2T3 MUTATED" 
     TCGA-55-5899      TCGA-55-6543      TCGA-55-6642      TCGA-55-6712 
  "OR2T3 MUTATED" "OR2T3 WILD-TYPE" "OR2T3 WILD-TYPE" "OR2T3 WILD-TYPE" 
     TCGA-64-1676      TCGA-64-1677      TCGA-64-1678      TCGA-64-1680 
"OR2T3 WILD-TYPE" "OR2T3 WILD-TYPE" "OR2T3 WILD-TYPE" "OR2T3 WILD-TYPE" 
     TCGA-64-5774      TCGA-64-5775      TCGA-64-5778      TCGA-64-5779 
"OR2T3 WILD-TYPE" "OR2T3 WILD-TYPE"   "OR2T3 MUTATED" "OR2T3 WILD-TYPE" 
     TCGA-64-5781      TCGA-64-5815      TCGA-67-3770      TCGA-67-3771 
"OR2T3 WILD-TYPE" "OR2T3 WILD-TYPE" "OR2T3 WILD-TYPE" "OR2T3 WILD-TYPE" 
     TCGA-67-3772      TCGA-67-3773      TCGA-67-3774      TCGA-67-6215 
"OR2T3 WILD-TYPE" "OR2T3 WILD-TYPE" "OR2T3 WILD-TYPE" "OR2T3 WILD-TYPE" 
     TCGA-67-6216      TCGA-67-6217      TCGA-71-6725      TCGA-73-4658 
"OR2T3 WILD-TYPE" "OR2T3 WILD-TYPE" "OR2T3 WILD-TYPE" "OR2T3 WILD-TYPE" 
     TCGA-73-4659      TCGA-73-4662      TCGA-73-4666      TCGA-73-4668 
"OR2T3 WILD-TYPE" "OR2T3 WILD-TYPE" "OR2T3 WILD-TYPE" "OR2T3 WILD-TYPE" 
     TCGA-73-4670      TCGA-73-4675      TCGA-73-4676      TCGA-73-4677 
"OR2T3 WILD-TYPE" "OR2T3 WILD-TYPE" "OR2T3 WILD-TYPE" "OR2T3 WILD-TYPE" 
     TCGA-91-6828      TCGA-91-6829      TCGA-91-6831      TCGA-91-6835 
"OR2T3 WILD-TYPE" "OR2T3 WILD-TYPE" "OR2T3 WILD-TYPE" "OR2T3 WILD-TYPE" 
     TCGA-91-6836 
"OR2T3 WILD-TYPE" 
     TCGA-05-4249      TCGA-05-4250      TCGA-05-4382      TCGA-05-4384 
"OR2T3 WILD-TYPE" "OR2T3 WILD-TYPE" "OR2T3 WILD-TYPE" "OR2T3 WILD-TYPE" 
     TCGA-05-4390      TCGA-05-4396      TCGA-05-4397      TCGA-05-4398 
"OR2T3 WILD-TYPE" "OR2T3 WILD-TYPE" "OR2T3 WILD-TYPE" "OR2T3 WILD-TYPE" 
     TCGA-05-4402      TCGA-05-4405      TCGA-05-4415      TCGA-05-4417 
"OR2T3 WILD-TYPE" "OR2T3 WILD-TYPE" "OR2T3 WILD-TYPE"   "OR2T3 MUTATED" 
     TCGA-05-4418      TCGA-05-4420      TCGA-05-4424      TCGA-05-4426 
"OR2T3 WILD-TYPE" "OR2T3 WILD-TYPE" "OR2T3 WILD-TYPE" "OR2T3 WILD-TYPE" 
     TCGA-05-4427      TCGA-05-4430      TCGA-05-4432      TCGA-05-4433 
"OR2T3 WILD-TYPE" "OR2T3 WILD-TYPE"   "OR2T3 MUTATED" "OR2T3 WILD-TYPE" 
     TCGA-05-4434      TCGA-05-5420      TCGA-05-5423      TCGA-05-5425 
"OR2T3 WILD-TYPE" "OR2T3 WILD-TYPE" "OR2T3 WILD-TYPE" "OR2T3 WILD-TYPE" 
     TCGA-05-5429      TCGA-05-5715      TCGA-35-3615      TCGA-35-4122 
"OR2T3 WILD-TYPE" "OR2T3 WILD-TYPE" "OR2T3 WILD-TYPE" "OR2T3 WILD-TYPE" 
     TCGA-35-4123      TCGA-35-5375      TCGA-38-4625      TCGA-38-4626 
"OR2T3 WILD-TYPE" "OR2T3 WILD-TYPE" "OR2T3 WILD-TYPE" "OR2T3 WILD-TYPE" 
     TCGA-38-4627      TCGA-38-4628      TCGA-38-4629      TCGA-38-4630 
"OR2T3 WILD-TYPE" "OR2T3 WILD-TYPE"   "OR2T3 MUTATED" "OR2T3 WILD-TYPE" 
     TCGA-38-4631      TCGA-38-4632      TCGA-38-6178      TCGA-44-2655 
"OR2T3 WILD-TYPE" "OR2T3 WILD-TYPE" "OR2T3 WILD-TYPE" "OR2T3 WILD-TYPE" 
     TCGA-44-2656      TCGA-44-2657      TCGA-44-2659      TCGA-44-2661 
"OR2T3 WILD-TYPE" "OR2T3 WILD-TYPE" "OR2T3 WILD-TYPE" "OR2T3 WILD-TYPE" 
     TCGA-44-2662      TCGA-44-2665      TCGA-44-2666      TCGA-44-2668 
"OR2T3 WILD-TYPE" "OR2T3 WILD-TYPE" "OR2T3 WILD-TYPE" "OR2T3 WILD-TYPE" 
     TCGA-44-3396      TCGA-44-3398      TCGA-44-3918      TCGA-44-3919 
"OR2T3 WILD-TYPE" "OR2T3 WILD-TYPE" "OR2T3 WILD-TYPE" "OR2T3 WILD-TYPE" 
     TCGA-44-4112      TCGA-44-5643      TCGA-44-5645      TCGA-44-6144 
"OR2T3 WILD-TYPE" "OR2T3 WILD-TYPE" "OR2T3 WILD-TYPE" "OR2T3 WILD-TYPE" 
     TCGA-44-6145      TCGA-44-6146      TCGA-44-6147      TCGA-44-6148 
"OR2T3 WILD-TYPE" "OR2T3 WILD-TYPE" "OR2T3 WILD-TYPE" "OR2T3 WILD-TYPE" 
     TCGA-44-6774      TCGA-44-6775      TCGA-44-6776      TCGA-44-6777 
"OR2T3 WILD-TYPE" "OR2T3 WILD-TYPE" "OR2T3 WILD-TYPE" "OR2T3 WILD-TYPE" 
     TCGA-44-6778      TCGA-44-6779      TCGA-49-4486      TCGA-49-4487 
"OR2T3 WILD-TYPE" "OR2T3 WILD-TYPE" "OR2T3 WILD-TYPE" "OR2T3 WILD-TYPE" 
     TCGA-49-4488      TCGA-49-4490      TCGA-49-4494      TCGA-49-4501 
"OR2T3 WILD-TYPE" "OR2T3 WILD-TYPE" "OR2T3 WILD-TYPE" "OR2T3 WILD-TYPE" 
     TCGA-49-4505      TCGA-49-4506      TCGA-49-4507      TCGA-49-4510 
"OR2T3 WILD-TYPE" "OR2T3 WILD-TYPE" "OR2T3 WILD-TYPE" "OR2T3 WILD-TYPE" 
     TCGA-49-4512      TCGA-49-4514      TCGA-49-6742      TCGA-49-6743 
"OR2T3 WILD-TYPE" "OR2T3 WILD-TYPE" "OR2T3 WILD-TYPE" "OR2T3 WILD-TYPE" 
     TCGA-49-6744      TCGA-49-6745      TCGA-50-5044      TCGA-50-5045 
"OR2T3 WILD-TYPE" "OR2T3 WILD-TYPE" "OR2T3 WILD-TYPE" "OR2T3 WILD-TYPE" 
     TCGA-50-5049      TCGA-50-5051      TCGA-50-5055      TCGA-50-5066 
  "OR2T3 MUTATED" "OR2T3 WILD-TYPE" "OR2T3 WILD-TYPE" "OR2T3 WILD-TYPE" 
     TCGA-50-5068      TCGA-50-5072      TCGA-50-5930      TCGA-50-5931 
"OR2T3 WILD-TYPE" "OR2T3 WILD-TYPE" "OR2T3 WILD-TYPE" "OR2T3 WILD-TYPE" 
     TCGA-50-5932      TCGA-50-5933      TCGA-50-5935      TCGA-50-5936 
"OR2T3 WILD-TYPE" "OR2T3 WILD-TYPE" "OR2T3 WILD-TYPE" "OR2T3 WILD-TYPE" 
     TCGA-50-5939      TCGA-50-5941      TCGA-50-5942      TCGA-50-5944 
"OR2T3 WILD-TYPE" "OR2T3 WILD-TYPE" "OR2T3 WILD-TYPE" "OR2T3 WILD-TYPE" 
     TCGA-50-5946      TCGA-50-6590      TCGA-50-6591      TCGA-50-6592 
"OR2T3 WILD-TYPE" "OR2T3 WILD-TYPE" "OR2T3 WILD-TYPE" "OR2T3 WILD-TYPE" 
     TCGA-50-6593      TCGA-50-6594      TCGA-50-6595      TCGA-50-6597 
"OR2T3 WILD-TYPE" "OR2T3 WILD-TYPE" "OR2T3 WILD-TYPE" "OR2T3 WILD-TYPE" 
     TCGA-55-1592      TCGA-55-1594      TCGA-55-1595      TCGA-55-1596 
"OR2T3 WILD-TYPE" "OR2T3 WILD-TYPE" "OR2T3 WILD-TYPE"   "OR2T3 MUTATED" 
     TCGA-55-5899      TCGA-55-6543      TCGA-55-6642      TCGA-55-6712 
  "OR2T3 MUTATED" "OR2T3 WILD-TYPE" "OR2T3 WILD-TYPE" "OR2T3 WILD-TYPE" 
     TCGA-64-1676      TCGA-64-1677      TCGA-64-1678      TCGA-64-1680 
"OR2T3 WILD-TYPE" "OR2T3 WILD-TYPE" "OR2T3 WILD-TYPE" "OR2T3 WILD-TYPE" 
     TCGA-64-5774      TCGA-64-5775      TCGA-64-5778      TCGA-64-5779 
"OR2T3 WILD-TYPE" "OR2T3 WILD-TYPE"   "OR2T3 MUTATED" "OR2T3 WILD-TYPE" 
     TCGA-64-5781      TCGA-64-5815      TCGA-67-3770      TCGA-67-3771 
"OR2T3 WILD-TYPE" "OR2T3 WILD-TYPE" "OR2T3 WILD-TYPE" "OR2T3 WILD-TYPE" 
     TCGA-67-3772      TCGA-67-3773      TCGA-67-3774      TCGA-67-6215 
"OR2T3 WILD-TYPE" "OR2T3 WILD-TYPE" "OR2T3 WILD-TYPE" "OR2T3 WILD-TYPE" 
     TCGA-67-6216      TCGA-67-6217      TCGA-71-6725      TCGA-73-4658 
"OR2T3 WILD-TYPE" "OR2T3 WILD-TYPE" "OR2T3 WILD-TYPE" "OR2T3 WILD-TYPE" 
     TCGA-73-4659      TCGA-73-4662      TCGA-73-4666      TCGA-73-4668 
"OR2T3 WILD-TYPE" "OR2T3 WILD-TYPE" "OR2T3 WILD-TYPE" "OR2T3 WILD-TYPE" 
     TCGA-73-4670      TCGA-73-4675      TCGA-73-4676      TCGA-73-4677 
"OR2T3 WILD-TYPE" "OR2T3 WILD-TYPE" "OR2T3 WILD-TYPE" "OR2T3 WILD-TYPE" 
     TCGA-91-6828      TCGA-91-6829      TCGA-91-6831      TCGA-91-6835 
"OR2T3 WILD-TYPE" "OR2T3 WILD-TYPE" "OR2T3 WILD-TYPE" "OR2T3 WILD-TYPE" 
     TCGA-91-6836 
"OR2T3 WILD-TYPE" 
[1] "hr=" "3.4"
D90V2, continuous
D90V3, binary
[1] "tbl2"
                 cls
clus              [,1] [,2]
  OR2T3 MUTATED      2    7
  OR2T3 WILD-TYPE   91   72
        clus
vv       OR2T3 MUTATED OR2T3 WILD-TYPE
  FEMALE             2              91
  MALE               7              72
D90V4, continuous
[1] "Remove cluster labels:" "OR2T3 MUTATED"         
clus
  OR2T3 MUTATED OR2T3 WILD-TYPE 
              1              11 
     TCGA-35-4122      TCGA-35-4123      TCGA-35-5375      TCGA-64-1677 
"OR2T3 WILD-TYPE" "OR2T3 WILD-TYPE" "OR2T3 WILD-TYPE" "OR2T3 WILD-TYPE" 
     TCGA-71-6725      TCGA-73-4659      TCGA-73-4662      TCGA-73-4666 
"OR2T3 WILD-TYPE" "OR2T3 WILD-TYPE" "OR2T3 WILD-TYPE" "OR2T3 WILD-TYPE" 
     TCGA-73-4668      TCGA-73-4676      TCGA-75-5122 
"OR2T3 WILD-TYPE" "OR2T3 WILD-TYPE" "OR2T3 WILD-TYPE" 
D90V5, multiclass
D90V6, multiclass
    clus
vv   OR2T3 MUTATED OR2T3 WILD-TYPE
  T1             2              39
  T2             5             103
  T3             2              12
  T4             0               8
D90V7, multiclass
       clus
vv      OR2T3 MUTATED OR2T3 WILD-TYPE
  N0                5              90
  N1                4              33
  N2+N3             0              35
D90V8, multiclass
    clus
vv   OR2T3 MUTATED OR2T3 WILD-TYPE
  M0             8             129
  M1             0               9
  MX             1              21
D90V9, multiclass
     clus
vv    OR2T3 MUTATED OR2T3 WILD-TYPE
  I               4              84
  II              5              28
  III             0              39
  IV              0               9
D90V10, binary
[1] "tbl2"
                 cls
clus              [,1] [,2]
  OR2T3 MUTATED      1    8
  OR2T3 WILD-TYPE   15  148
     clus
vv    OR2T3 MUTATED OR2T3 WILD-TYPE
  NO              1              15
  YES             8             148
D90V11, continuous
D90V12, continuous
D90V13, multiclass
                                             clus
vv                                            OR2T3 MUTATED OR2T3 WILD-TYPE
  CURRENT REFORMED SMOKER FOR < OR = 15 YEARS             3              59
  CURRENT REFORMED SMOKER FOR > 15 YEARS                  1              45
  CURRENT SMOKER                                          4              24
  LIFELONG NON-SMOKER                                     0              24
D90V14, continuous

Clustering(91) Variable = C14ORF177 MUTATION ANALYSIS
D91V1, survival
                     sevent
clus2                  0  1
  C14ORF177 MUTATED    4  1
  C14ORF177 WILD-TYPE 95 49
  C14ORF177 MUTATED C14ORF177 WILD-TYPE 
                  5                 144 
  C14ORF177 MUTATED C14ORF177 WILD-TYPE 
                  1                  49 
$`C14ORF177 MUTATED`
TCGA-05-4382 TCGA-05-4432 TCGA-44-2665 TCGA-50-6590 TCGA-64-1678 
       19.92        25.02        13.15        42.31        39.09 

$`C14ORF177 WILD-TYPE`
TCGA-05-4249 TCGA-05-4250 TCGA-05-4384 TCGA-05-4390 TCGA-05-4396 TCGA-05-4397 
       38.07         3.98        14.01        37.02         9.96        24.03 
TCGA-05-4398 TCGA-05-4402 TCGA-05-4405 TCGA-05-4415 TCGA-05-4417 TCGA-05-4418 
       47.05         8.02        20.05         2.96        14.93         8.98 
TCGA-05-4420 TCGA-05-4424 TCGA-05-4426 TCGA-05-4427 TCGA-05-4430 TCGA-05-4433 
       29.95        30.02        26.01        26.01        25.02        24.00 
TCGA-05-4434 TCGA-05-5420 TCGA-05-5423 TCGA-05-5425 TCGA-05-5429 TCGA-05-5715 
       15.02         1.02         4.96         2.96         0.99         2.04 
TCGA-35-3615 TCGA-35-4122 TCGA-35-4123 TCGA-35-5375 TCGA-38-4625 TCGA-38-4626 
        0.46         7.36         5.95         8.68        47.61        85.32 
TCGA-38-4627 TCGA-38-4628 TCGA-38-4629 TCGA-38-4630 TCGA-38-4631 TCGA-38-4632 
       37.71        49.02        28.37        35.28        11.64        44.61 
TCGA-38-6178 TCGA-44-2655 TCGA-44-2656 TCGA-44-2657 TCGA-44-2659 TCGA-44-2661 
        5.19        18.87        19.10        13.15        17.39         3.39 
TCGA-44-2662 TCGA-44-2666 TCGA-44-2668 TCGA-44-3396 TCGA-44-3398 TCGA-44-3918 
       15.78         3.19         8.09        10.22         8.32         6.44 
TCGA-44-3919 TCGA-44-4112 TCGA-44-5643 TCGA-44-5645 TCGA-44-6144 TCGA-44-6145 
        6.21         4.60         3.48         6.84         0.30         3.35 
TCGA-44-6146 TCGA-44-6147 TCGA-44-6148 TCGA-44-6774 TCGA-44-6775 TCGA-44-6776 
        9.93         7.76         3.12         5.42         2.70        63.72 
TCGA-44-6777 TCGA-44-6778 TCGA-44-6779 TCGA-49-4486 TCGA-49-4487 TCGA-49-4488 
       32.45        36.49        16.41        76.21        28.11        28.57 
TCGA-49-4490 TCGA-49-4494 TCGA-49-4501 TCGA-49-4505 TCGA-49-4506 TCGA-49-4507 
       12.66        35.54        46.72        14.07        32.84         8.81 
TCGA-49-4510 TCGA-49-4512 TCGA-49-4514 TCGA-49-6742 TCGA-49-6743 TCGA-49-6744 
       29.46        29.75        43.20        15.02        12.13        12.99 
TCGA-49-6745 TCGA-50-5044 TCGA-50-5045 TCGA-50-5049 TCGA-50-5051 TCGA-50-5055 
        4.93        20.48        71.47        48.82        14.96        25.81 
TCGA-50-5066 TCGA-50-5068 TCGA-50-5072 TCGA-50-5930 TCGA-50-5931 TCGA-50-5932 
        9.76        49.28         8.05         9.27         8.78        35.87 
TCGA-50-5933 TCGA-50-5935 TCGA-50-5936 TCGA-50-5939 TCGA-50-5941 TCGA-50-5942 
       77.88        21.47         8.45        15.12         9.37         4.44 
TCGA-50-5944 TCGA-50-5946 TCGA-50-6591 TCGA-50-6592 TCGA-50-6593 TCGA-50-6594 
       12.26        11.47         3.88        25.51        11.05        12.16 
TCGA-50-6595 TCGA-50-6597 TCGA-55-1592 TCGA-55-1594 TCGA-55-1595 TCGA-55-1596 
        6.21        33.37        23.05        38.73        48.62        45.17 
TCGA-55-5899 TCGA-55-6543 TCGA-55-6642 TCGA-55-6712 TCGA-64-1676 TCGA-64-1677 
        2.86         0.07        32.61         0.79        56.81        20.65 
TCGA-64-1680 TCGA-64-5774 TCGA-64-5775 TCGA-64-5778 TCGA-64-5779 TCGA-64-5781 
       37.02        83.84         0.10        30.44        16.67        39.52 
TCGA-64-5815 TCGA-67-3770 TCGA-67-3771 TCGA-67-3772 TCGA-67-3773 TCGA-67-3774 
        7.33         0.99         1.97         0.59         2.04         0.59 
TCGA-67-6215 TCGA-67-6216 TCGA-67-6217 TCGA-71-6725 TCGA-73-4658 TCGA-73-4659 
        0.89         0.69        13.87         2.01        52.57        23.38 
TCGA-73-4662 TCGA-73-4666 TCGA-73-4668 TCGA-73-4670 TCGA-73-4675 TCGA-73-4676 
       29.95        20.28        15.35         0.46         1.32         4.01 
TCGA-73-4677 TCGA-91-6828 TCGA-91-6829 TCGA-91-6831 TCGA-91-6835 TCGA-91-6836 
        1.25         1.22        41.33         1.28         1.15         0.36 

  C14ORF177 MUTATED C14ORF177 WILD-TYPE 
              13.15                0.07 
  C14ORF177 MUTATED C14ORF177 WILD-TYPE 
              42.31               85.32 
  C14ORF177 MUTATED C14ORF177 WILD-TYPE 
              25.02               13.07 
[1] "13.2 - 42.3 (25.0)" "0.1 - 85.3 (13.1)" 
         TCGA-05-4249          TCGA-05-4250          TCGA-05-4382 
"C14ORF177 WILD-TYPE" "C14ORF177 WILD-TYPE"   "C14ORF177 MUTATED" 
         TCGA-05-4384          TCGA-05-4390          TCGA-05-4396 
"C14ORF177 WILD-TYPE" "C14ORF177 WILD-TYPE" "C14ORF177 WILD-TYPE" 
         TCGA-05-4397          TCGA-05-4398          TCGA-05-4402 
"C14ORF177 WILD-TYPE" "C14ORF177 WILD-TYPE" "C14ORF177 WILD-TYPE" 
         TCGA-05-4405          TCGA-05-4415          TCGA-05-4417 
"C14ORF177 WILD-TYPE" "C14ORF177 WILD-TYPE" "C14ORF177 WILD-TYPE" 
         TCGA-05-4418          TCGA-05-4420          TCGA-05-4424 
"C14ORF177 WILD-TYPE" "C14ORF177 WILD-TYPE" "C14ORF177 WILD-TYPE" 
         TCGA-05-4426          TCGA-05-4427          TCGA-05-4430 
"C14ORF177 WILD-TYPE" "C14ORF177 WILD-TYPE" "C14ORF177 WILD-TYPE" 
         TCGA-05-4432          TCGA-05-4433          TCGA-05-4434 
  "C14ORF177 MUTATED" "C14ORF177 WILD-TYPE" "C14ORF177 WILD-TYPE" 
         TCGA-05-5420          TCGA-05-5423          TCGA-05-5425 
"C14ORF177 WILD-TYPE" "C14ORF177 WILD-TYPE" "C14ORF177 WILD-TYPE" 
         TCGA-05-5429          TCGA-05-5715          TCGA-35-3615 
"C14ORF177 WILD-TYPE" "C14ORF177 WILD-TYPE" "C14ORF177 WILD-TYPE" 
         TCGA-35-4122          TCGA-35-4123          TCGA-35-5375 
"C14ORF177 WILD-TYPE" "C14ORF177 WILD-TYPE" "C14ORF177 WILD-TYPE" 
         TCGA-38-4625          TCGA-38-4626          TCGA-38-4627 
"C14ORF177 WILD-TYPE" "C14ORF177 WILD-TYPE" "C14ORF177 WILD-TYPE" 
         TCGA-38-4628          TCGA-38-4629          TCGA-38-4630 
"C14ORF177 WILD-TYPE" "C14ORF177 WILD-TYPE" "C14ORF177 WILD-TYPE" 
         TCGA-38-4631          TCGA-38-4632          TCGA-38-6178 
"C14ORF177 WILD-TYPE" "C14ORF177 WILD-TYPE" "C14ORF177 WILD-TYPE" 
         TCGA-44-2655          TCGA-44-2656          TCGA-44-2657 
"C14ORF177 WILD-TYPE" "C14ORF177 WILD-TYPE" "C14ORF177 WILD-TYPE" 
         TCGA-44-2659          TCGA-44-2661          TCGA-44-2662 
"C14ORF177 WILD-TYPE" "C14ORF177 WILD-TYPE" "C14ORF177 WILD-TYPE" 
         TCGA-44-2665          TCGA-44-2666          TCGA-44-2668 
  "C14ORF177 MUTATED" "C14ORF177 WILD-TYPE" "C14ORF177 WILD-TYPE" 
         TCGA-44-3396          TCGA-44-3398          TCGA-44-3918 
"C14ORF177 WILD-TYPE" "C14ORF177 WILD-TYPE" "C14ORF177 WILD-TYPE" 
         TCGA-44-3919          TCGA-44-4112          TCGA-44-5643 
"C14ORF177 WILD-TYPE" "C14ORF177 WILD-TYPE" "C14ORF177 WILD-TYPE" 
         TCGA-44-5645          TCGA-44-6144          TCGA-44-6145 
"C14ORF177 WILD-TYPE" "C14ORF177 WILD-TYPE" "C14ORF177 WILD-TYPE" 
         TCGA-44-6146          TCGA-44-6147          TCGA-44-6148 
"C14ORF177 WILD-TYPE" "C14ORF177 WILD-TYPE" "C14ORF177 WILD-TYPE" 
         TCGA-44-6774          TCGA-44-6775          TCGA-44-6776 
"C14ORF177 WILD-TYPE" "C14ORF177 WILD-TYPE" "C14ORF177 WILD-TYPE" 
         TCGA-44-6777          TCGA-44-6778          TCGA-44-6779 
"C14ORF177 WILD-TYPE" "C14ORF177 WILD-TYPE" "C14ORF177 WILD-TYPE" 
         TCGA-49-4486          TCGA-49-4487          TCGA-49-4488 
"C14ORF177 WILD-TYPE" "C14ORF177 WILD-TYPE" "C14ORF177 WILD-TYPE" 
         TCGA-49-4490          TCGA-49-4494          TCGA-49-4501 
"C14ORF177 WILD-TYPE" "C14ORF177 WILD-TYPE" "C14ORF177 WILD-TYPE" 
         TCGA-49-4505          TCGA-49-4506          TCGA-49-4507 
"C14ORF177 WILD-TYPE" "C14ORF177 WILD-TYPE" "C14ORF177 WILD-TYPE" 
         TCGA-49-4510          TCGA-49-4512          TCGA-49-4514 
"C14ORF177 WILD-TYPE" "C14ORF177 WILD-TYPE" "C14ORF177 WILD-TYPE" 
         TCGA-49-6742          TCGA-49-6743          TCGA-49-6744 
"C14ORF177 WILD-TYPE" "C14ORF177 WILD-TYPE" "C14ORF177 WILD-TYPE" 
         TCGA-49-6745          TCGA-50-5044          TCGA-50-5045 
"C14ORF177 WILD-TYPE" "C14ORF177 WILD-TYPE" "C14ORF177 WILD-TYPE" 
         TCGA-50-5049          TCGA-50-5051          TCGA-50-5055 
"C14ORF177 WILD-TYPE" "C14ORF177 WILD-TYPE" "C14ORF177 WILD-TYPE" 
         TCGA-50-5066          TCGA-50-5068          TCGA-50-5072 
"C14ORF177 WILD-TYPE" "C14ORF177 WILD-TYPE" "C14ORF177 WILD-TYPE" 
         TCGA-50-5930          TCGA-50-5931          TCGA-50-5932 
"C14ORF177 WILD-TYPE" "C14ORF177 WILD-TYPE" "C14ORF177 WILD-TYPE" 
         TCGA-50-5933          TCGA-50-5935          TCGA-50-5936 
"C14ORF177 WILD-TYPE" "C14ORF177 WILD-TYPE" "C14ORF177 WILD-TYPE" 
         TCGA-50-5939          TCGA-50-5941          TCGA-50-5942 
"C14ORF177 WILD-TYPE" "C14ORF177 WILD-TYPE" "C14ORF177 WILD-TYPE" 
         TCGA-50-5944          TCGA-50-5946          TCGA-50-6590 
"C14ORF177 WILD-TYPE" "C14ORF177 WILD-TYPE"   "C14ORF177 MUTATED" 
         TCGA-50-6591          TCGA-50-6592          TCGA-50-6593 
"C14ORF177 WILD-TYPE" "C14ORF177 WILD-TYPE" "C14ORF177 WILD-TYPE" 
         TCGA-50-6594          TCGA-50-6595          TCGA-50-6597 
"C14ORF177 WILD-TYPE" "C14ORF177 WILD-TYPE" "C14ORF177 WILD-TYPE" 
         TCGA-55-1592          TCGA-55-1594          TCGA-55-1595 
"C14ORF177 WILD-TYPE" "C14ORF177 WILD-TYPE" "C14ORF177 WILD-TYPE" 
         TCGA-55-1596          TCGA-55-5899          TCGA-55-6543 
"C14ORF177 WILD-TYPE" "C14ORF177 WILD-TYPE" "C14ORF177 WILD-TYPE" 
         TCGA-55-6642          TCGA-55-6712          TCGA-64-1676 
"C14ORF177 WILD-TYPE" "C14ORF177 WILD-TYPE" "C14ORF177 WILD-TYPE" 
         TCGA-64-1677          TCGA-64-1678          TCGA-64-1680 
"C14ORF177 WILD-TYPE"   "C14ORF177 MUTATED" "C14ORF177 WILD-TYPE" 
         TCGA-64-5774          TCGA-64-5775          TCGA-64-5778 
"C14ORF177 WILD-TYPE" "C14ORF177 WILD-TYPE" "C14ORF177 WILD-TYPE" 
         TCGA-64-5779          TCGA-64-5781          TCGA-64-5815 
"C14ORF177 WILD-TYPE" "C14ORF177 WILD-TYPE" "C14ORF177 WILD-TYPE" 
         TCGA-67-3770          TCGA-67-3771          TCGA-67-3772 
"C14ORF177 WILD-TYPE" "C14ORF177 WILD-TYPE" "C14ORF177 WILD-TYPE" 
         TCGA-67-3773          TCGA-67-3774          TCGA-67-6215 
"C14ORF177 WILD-TYPE" "C14ORF177 WILD-TYPE" "C14ORF177 WILD-TYPE" 
         TCGA-67-6216          TCGA-67-6217          TCGA-71-6725 
"C14ORF177 WILD-TYPE" "C14ORF177 WILD-TYPE" "C14ORF177 WILD-TYPE" 
         TCGA-73-4658          TCGA-73-4659          TCGA-73-4662 
"C14ORF177 WILD-TYPE" "C14ORF177 WILD-TYPE" "C14ORF177 WILD-TYPE" 
         TCGA-73-4666          TCGA-73-4668          TCGA-73-4670 
"C14ORF177 WILD-TYPE" "C14ORF177 WILD-TYPE" "C14ORF177 WILD-TYPE" 
         TCGA-73-4675          TCGA-73-4676          TCGA-73-4677 
"C14ORF177 WILD-TYPE" "C14ORF177 WILD-TYPE" "C14ORF177 WILD-TYPE" 
         TCGA-91-6828          TCGA-91-6829          TCGA-91-6831 
"C14ORF177 WILD-TYPE" "C14ORF177 WILD-TYPE" "C14ORF177 WILD-TYPE" 
         TCGA-91-6835          TCGA-91-6836 
"C14ORF177 WILD-TYPE" "C14ORF177 WILD-TYPE" 
         TCGA-05-4249          TCGA-05-4250          TCGA-05-4382 
"C14ORF177 WILD-TYPE" "C14ORF177 WILD-TYPE"   "C14ORF177 MUTATED" 
         TCGA-05-4384          TCGA-05-4390          TCGA-05-4396 
"C14ORF177 WILD-TYPE" "C14ORF177 WILD-TYPE" "C14ORF177 WILD-TYPE" 
         TCGA-05-4397          TCGA-05-4398          TCGA-05-4402 
"C14ORF177 WILD-TYPE" "C14ORF177 WILD-TYPE" "C14ORF177 WILD-TYPE" 
         TCGA-05-4405          TCGA-05-4415          TCGA-05-4417 
"C14ORF177 WILD-TYPE" "C14ORF177 WILD-TYPE" "C14ORF177 WILD-TYPE" 
         TCGA-05-4418          TCGA-05-4420          TCGA-05-4424 
"C14ORF177 WILD-TYPE" "C14ORF177 WILD-TYPE" "C14ORF177 WILD-TYPE" 
         TCGA-05-4426          TCGA-05-4427          TCGA-05-4430 
"C14ORF177 WILD-TYPE" "C14ORF177 WILD-TYPE" "C14ORF177 WILD-TYPE" 
         TCGA-05-4432          TCGA-05-4433          TCGA-05-4434 
  "C14ORF177 MUTATED" "C14ORF177 WILD-TYPE" "C14ORF177 WILD-TYPE" 
         TCGA-05-5420          TCGA-05-5423          TCGA-05-5425 
"C14ORF177 WILD-TYPE" "C14ORF177 WILD-TYPE" "C14ORF177 WILD-TYPE" 
         TCGA-05-5429          TCGA-05-5715          TCGA-35-3615 
"C14ORF177 WILD-TYPE" "C14ORF177 WILD-TYPE" "C14ORF177 WILD-TYPE" 
         TCGA-35-4122          TCGA-35-4123          TCGA-35-5375 
"C14ORF177 WILD-TYPE" "C14ORF177 WILD-TYPE" "C14ORF177 WILD-TYPE" 
         TCGA-38-4625          TCGA-38-4626          TCGA-38-4627 
"C14ORF177 WILD-TYPE" "C14ORF177 WILD-TYPE" "C14ORF177 WILD-TYPE" 
         TCGA-38-4628          TCGA-38-4629          TCGA-38-4630 
"C14ORF177 WILD-TYPE" "C14ORF177 WILD-TYPE" "C14ORF177 WILD-TYPE" 
         TCGA-38-4631          TCGA-38-4632          TCGA-38-6178 
"C14ORF177 WILD-TYPE" "C14ORF177 WILD-TYPE" "C14ORF177 WILD-TYPE" 
         TCGA-44-2655          TCGA-44-2656          TCGA-44-2657 
"C14ORF177 WILD-TYPE" "C14ORF177 WILD-TYPE" "C14ORF177 WILD-TYPE" 
         TCGA-44-2659          TCGA-44-2661          TCGA-44-2662 
"C14ORF177 WILD-TYPE" "C14ORF177 WILD-TYPE" "C14ORF177 WILD-TYPE" 
         TCGA-44-2665          TCGA-44-2666          TCGA-44-2668 
  "C14ORF177 MUTATED" "C14ORF177 WILD-TYPE" "C14ORF177 WILD-TYPE" 
         TCGA-44-3396          TCGA-44-3398          TCGA-44-3918 
"C14ORF177 WILD-TYPE" "C14ORF177 WILD-TYPE" "C14ORF177 WILD-TYPE" 
         TCGA-44-3919          TCGA-44-4112          TCGA-44-5643 
"C14ORF177 WILD-TYPE" "C14ORF177 WILD-TYPE" "C14ORF177 WILD-TYPE" 
         TCGA-44-5645          TCGA-44-6144          TCGA-44-6145 
"C14ORF177 WILD-TYPE" "C14ORF177 WILD-TYPE" "C14ORF177 WILD-TYPE" 
         TCGA-44-6146          TCGA-44-6147          TCGA-44-6148 
"C14ORF177 WILD-TYPE" "C14ORF177 WILD-TYPE" "C14ORF177 WILD-TYPE" 
         TCGA-44-6774          TCGA-44-6775          TCGA-44-6776 
"C14ORF177 WILD-TYPE" "C14ORF177 WILD-TYPE" "C14ORF177 WILD-TYPE" 
         TCGA-44-6777          TCGA-44-6778          TCGA-44-6779 
"C14ORF177 WILD-TYPE" "C14ORF177 WILD-TYPE" "C14ORF177 WILD-TYPE" 
         TCGA-49-4486          TCGA-49-4487          TCGA-49-4488 
"C14ORF177 WILD-TYPE" "C14ORF177 WILD-TYPE" "C14ORF177 WILD-TYPE" 
         TCGA-49-4490          TCGA-49-4494          TCGA-49-4501 
"C14ORF177 WILD-TYPE" "C14ORF177 WILD-TYPE" "C14ORF177 WILD-TYPE" 
         TCGA-49-4505          TCGA-49-4506          TCGA-49-4507 
"C14ORF177 WILD-TYPE" "C14ORF177 WILD-TYPE" "C14ORF177 WILD-TYPE" 
         TCGA-49-4510          TCGA-49-4512          TCGA-49-4514 
"C14ORF177 WILD-TYPE" "C14ORF177 WILD-TYPE" "C14ORF177 WILD-TYPE" 
         TCGA-49-6742          TCGA-49-6743          TCGA-49-6744 
"C14ORF177 WILD-TYPE" "C14ORF177 WILD-TYPE" "C14ORF177 WILD-TYPE" 
         TCGA-49-6745          TCGA-50-5044          TCGA-50-5045 
"C14ORF177 WILD-TYPE" "C14ORF177 WILD-TYPE" "C14ORF177 WILD-TYPE" 
         TCGA-50-5049          TCGA-50-5051          TCGA-50-5055 
"C14ORF177 WILD-TYPE" "C14ORF177 WILD-TYPE" "C14ORF177 WILD-TYPE" 
         TCGA-50-5066          TCGA-50-5068          TCGA-50-5072 
"C14ORF177 WILD-TYPE" "C14ORF177 WILD-TYPE" "C14ORF177 WILD-TYPE" 
         TCGA-50-5930          TCGA-50-5931          TCGA-50-5932 
"C14ORF177 WILD-TYPE" "C14ORF177 WILD-TYPE" "C14ORF177 WILD-TYPE" 
         TCGA-50-5933          TCGA-50-5935          TCGA-50-5936 
"C14ORF177 WILD-TYPE" "C14ORF177 WILD-TYPE" "C14ORF177 WILD-TYPE" 
         TCGA-50-5939          TCGA-50-5941          TCGA-50-5942 
"C14ORF177 WILD-TYPE" "C14ORF177 WILD-TYPE" "C14ORF177 WILD-TYPE" 
         TCGA-50-5944          TCGA-50-5946          TCGA-50-6590 
"C14ORF177 WILD-TYPE" "C14ORF177 WILD-TYPE"   "C14ORF177 MUTATED" 
         TCGA-50-6591          TCGA-50-6592          TCGA-50-6593 
"C14ORF177 WILD-TYPE" "C14ORF177 WILD-TYPE" "C14ORF177 WILD-TYPE" 
         TCGA-50-6594          TCGA-50-6595          TCGA-50-6597 
"C14ORF177 WILD-TYPE" "C14ORF177 WILD-TYPE" "C14ORF177 WILD-TYPE" 
         TCGA-55-1592          TCGA-55-1594          TCGA-55-1595 
"C14ORF177 WILD-TYPE" "C14ORF177 WILD-TYPE" "C14ORF177 WILD-TYPE" 
         TCGA-55-1596          TCGA-55-5899          TCGA-55-6543 
"C14ORF177 WILD-TYPE" "C14ORF177 WILD-TYPE" "C14ORF177 WILD-TYPE" 
         TCGA-55-6642          TCGA-55-6712          TCGA-64-1676 
"C14ORF177 WILD-TYPE" "C14ORF177 WILD-TYPE" "C14ORF177 WILD-TYPE" 
         TCGA-64-1677          TCGA-64-1678          TCGA-64-1680 
"C14ORF177 WILD-TYPE"   "C14ORF177 MUTATED" "C14ORF177 WILD-TYPE" 
         TCGA-64-5774          TCGA-64-5775          TCGA-64-5778 
"C14ORF177 WILD-TYPE" "C14ORF177 WILD-TYPE" "C14ORF177 WILD-TYPE" 
         TCGA-64-5779          TCGA-64-5781          TCGA-64-5815 
"C14ORF177 WILD-TYPE" "C14ORF177 WILD-TYPE" "C14ORF177 WILD-TYPE" 
         TCGA-67-3770          TCGA-67-3771          TCGA-67-3772 
"C14ORF177 WILD-TYPE" "C14ORF177 WILD-TYPE" "C14ORF177 WILD-TYPE" 
         TCGA-67-3773          TCGA-67-3774          TCGA-67-6215 
"C14ORF177 WILD-TYPE" "C14ORF177 WILD-TYPE" "C14ORF177 WILD-TYPE" 
         TCGA-67-6216          TCGA-67-6217          TCGA-71-6725 
"C14ORF177 WILD-TYPE" "C14ORF177 WILD-TYPE" "C14ORF177 WILD-TYPE" 
         TCGA-73-4658          TCGA-73-4659          TCGA-73-4662 
"C14ORF177 WILD-TYPE" "C14ORF177 WILD-TYPE" "C14ORF177 WILD-TYPE" 
         TCGA-73-4666          TCGA-73-4668          TCGA-73-4670 
"C14ORF177 WILD-TYPE" "C14ORF177 WILD-TYPE" "C14ORF177 WILD-TYPE" 
         TCGA-73-4675          TCGA-73-4676          TCGA-73-4677 
"C14ORF177 WILD-TYPE" "C14ORF177 WILD-TYPE" "C14ORF177 WILD-TYPE" 
         TCGA-91-6828          TCGA-91-6829          TCGA-91-6831 
"C14ORF177 WILD-TYPE" "C14ORF177 WILD-TYPE" "C14ORF177 WILD-TYPE" 
         TCGA-91-6835          TCGA-91-6836 
"C14ORF177 WILD-TYPE" "C14ORF177 WILD-TYPE" 
         TCGA-05-4249          TCGA-05-4250          TCGA-05-4382 
"C14ORF177 WILD-TYPE" "C14ORF177 WILD-TYPE"   "C14ORF177 MUTATED" 
         TCGA-05-4384          TCGA-05-4390          TCGA-05-4396 
"C14ORF177 WILD-TYPE" "C14ORF177 WILD-TYPE" "C14ORF177 WILD-TYPE" 
         TCGA-05-4397          TCGA-05-4398          TCGA-05-4402 
"C14ORF177 WILD-TYPE" "C14ORF177 WILD-TYPE" "C14ORF177 WILD-TYPE" 
         TCGA-05-4405          TCGA-05-4415          TCGA-05-4417 
"C14ORF177 WILD-TYPE" "C14ORF177 WILD-TYPE" "C14ORF177 WILD-TYPE" 
         TCGA-05-4418          TCGA-05-4420          TCGA-05-4424 
"C14ORF177 WILD-TYPE" "C14ORF177 WILD-TYPE" "C14ORF177 WILD-TYPE" 
         TCGA-05-4426          TCGA-05-4427          TCGA-05-4430 
"C14ORF177 WILD-TYPE" "C14ORF177 WILD-TYPE" "C14ORF177 WILD-TYPE" 
         TCGA-05-4432          TCGA-05-4433          TCGA-05-4434 
  "C14ORF177 MUTATED" "C14ORF177 WILD-TYPE" "C14ORF177 WILD-TYPE" 
         TCGA-05-5420          TCGA-05-5423          TCGA-05-5425 
"C14ORF177 WILD-TYPE" "C14ORF177 WILD-TYPE" "C14ORF177 WILD-TYPE" 
         TCGA-05-5429          TCGA-05-5715          TCGA-35-3615 
"C14ORF177 WILD-TYPE" "C14ORF177 WILD-TYPE" "C14ORF177 WILD-TYPE" 
         TCGA-35-4122          TCGA-35-4123          TCGA-35-5375 
"C14ORF177 WILD-TYPE" "C14ORF177 WILD-TYPE" "C14ORF177 WILD-TYPE" 
         TCGA-38-4625          TCGA-38-4626          TCGA-38-4627 
"C14ORF177 WILD-TYPE" "C14ORF177 WILD-TYPE" "C14ORF177 WILD-TYPE" 
         TCGA-38-4628          TCGA-38-4629          TCGA-38-4630 
"C14ORF177 WILD-TYPE" "C14ORF177 WILD-TYPE" "C14ORF177 WILD-TYPE" 
         TCGA-38-4631          TCGA-38-4632          TCGA-38-6178 
"C14ORF177 WILD-TYPE" "C14ORF177 WILD-TYPE" "C14ORF177 WILD-TYPE" 
         TCGA-44-2655          TCGA-44-2656          TCGA-44-2657 
"C14ORF177 WILD-TYPE" "C14ORF177 WILD-TYPE" "C14ORF177 WILD-TYPE" 
         TCGA-44-2659          TCGA-44-2661          TCGA-44-2662 
"C14ORF177 WILD-TYPE" "C14ORF177 WILD-TYPE" "C14ORF177 WILD-TYPE" 
         TCGA-44-2665          TCGA-44-2666          TCGA-44-2668 
  "C14ORF177 MUTATED" "C14ORF177 WILD-TYPE" "C14ORF177 WILD-TYPE" 
         TCGA-44-3396          TCGA-44-3398          TCGA-44-3918 
"C14ORF177 WILD-TYPE" "C14ORF177 WILD-TYPE" "C14ORF177 WILD-TYPE" 
         TCGA-44-3919          TCGA-44-4112          TCGA-44-5643 
"C14ORF177 WILD-TYPE" "C14ORF177 WILD-TYPE" "C14ORF177 WILD-TYPE" 
         TCGA-44-5645          TCGA-44-6144          TCGA-44-6145 
"C14ORF177 WILD-TYPE" "C14ORF177 WILD-TYPE" "C14ORF177 WILD-TYPE" 
         TCGA-44-6146          TCGA-44-6147          TCGA-44-6148 
"C14ORF177 WILD-TYPE" "C14ORF177 WILD-TYPE" "C14ORF177 WILD-TYPE" 
         TCGA-44-6774          TCGA-44-6775          TCGA-44-6776 
"C14ORF177 WILD-TYPE" "C14ORF177 WILD-TYPE" "C14ORF177 WILD-TYPE" 
         TCGA-44-6777          TCGA-44-6778          TCGA-44-6779 
"C14ORF177 WILD-TYPE" "C14ORF177 WILD-TYPE" "C14ORF177 WILD-TYPE" 
         TCGA-49-4486          TCGA-49-4487          TCGA-49-4488 
"C14ORF177 WILD-TYPE" "C14ORF177 WILD-TYPE" "C14ORF177 WILD-TYPE" 
         TCGA-49-4490          TCGA-49-4494          TCGA-49-4501 
"C14ORF177 WILD-TYPE" "C14ORF177 WILD-TYPE" "C14ORF177 WILD-TYPE" 
         TCGA-49-4505          TCGA-49-4506          TCGA-49-4507 
"C14ORF177 WILD-TYPE" "C14ORF177 WILD-TYPE" "C14ORF177 WILD-TYPE" 
         TCGA-49-4510          TCGA-49-4512          TCGA-49-4514 
"C14ORF177 WILD-TYPE" "C14ORF177 WILD-TYPE" "C14ORF177 WILD-TYPE" 
         TCGA-49-6742          TCGA-49-6743          TCGA-49-6744 
"C14ORF177 WILD-TYPE" "C14ORF177 WILD-TYPE" "C14ORF177 WILD-TYPE" 
         TCGA-49-6745          TCGA-50-5044          TCGA-50-5045 
"C14ORF177 WILD-TYPE" "C14ORF177 WILD-TYPE" "C14ORF177 WILD-TYPE" 
         TCGA-50-5049          TCGA-50-5051          TCGA-50-5055 
"C14ORF177 WILD-TYPE" "C14ORF177 WILD-TYPE" "C14ORF177 WILD-TYPE" 
         TCGA-50-5066          TCGA-50-5068          TCGA-50-5072 
"C14ORF177 WILD-TYPE" "C14ORF177 WILD-TYPE" "C14ORF177 WILD-TYPE" 
         TCGA-50-5930          TCGA-50-5931          TCGA-50-5932 
"C14ORF177 WILD-TYPE" "C14ORF177 WILD-TYPE" "C14ORF177 WILD-TYPE" 
         TCGA-50-5933          TCGA-50-5935          TCGA-50-5936 
"C14ORF177 WILD-TYPE" "C14ORF177 WILD-TYPE" "C14ORF177 WILD-TYPE" 
         TCGA-50-5939          TCGA-50-5941          TCGA-50-5942 
"C14ORF177 WILD-TYPE" "C14ORF177 WILD-TYPE" "C14ORF177 WILD-TYPE" 
         TCGA-50-5944          TCGA-50-5946          TCGA-50-6590 
"C14ORF177 WILD-TYPE" "C14ORF177 WILD-TYPE"   "C14ORF177 MUTATED" 
         TCGA-50-6591          TCGA-50-6592          TCGA-50-6593 
"C14ORF177 WILD-TYPE" "C14ORF177 WILD-TYPE" "C14ORF177 WILD-TYPE" 
         TCGA-50-6594          TCGA-50-6595          TCGA-50-6597 
"C14ORF177 WILD-TYPE" "C14ORF177 WILD-TYPE" "C14ORF177 WILD-TYPE" 
         TCGA-55-1592          TCGA-55-1594          TCGA-55-1595 
"C14ORF177 WILD-TYPE" "C14ORF177 WILD-TYPE" "C14ORF177 WILD-TYPE" 
         TCGA-55-1596          TCGA-55-5899          TCGA-55-6543 
"C14ORF177 WILD-TYPE" "C14ORF177 WILD-TYPE" "C14ORF177 WILD-TYPE" 
         TCGA-55-6642          TCGA-55-6712          TCGA-64-1676 
"C14ORF177 WILD-TYPE" "C14ORF177 WILD-TYPE" "C14ORF177 WILD-TYPE" 
         TCGA-64-1677          TCGA-64-1678          TCGA-64-1680 
"C14ORF177 WILD-TYPE"   "C14ORF177 MUTATED" "C14ORF177 WILD-TYPE" 
         TCGA-64-5774          TCGA-64-5775          TCGA-64-5778 
"C14ORF177 WILD-TYPE" "C14ORF177 WILD-TYPE" "C14ORF177 WILD-TYPE" 
         TCGA-64-5779          TCGA-64-5781          TCGA-64-5815 
"C14ORF177 WILD-TYPE" "C14ORF177 WILD-TYPE" "C14ORF177 WILD-TYPE" 
         TCGA-67-3770          TCGA-67-3771          TCGA-67-3772 
"C14ORF177 WILD-TYPE" "C14ORF177 WILD-TYPE" "C14ORF177 WILD-TYPE" 
         TCGA-67-3773          TCGA-67-3774          TCGA-67-6215 
"C14ORF177 WILD-TYPE" "C14ORF177 WILD-TYPE" "C14ORF177 WILD-TYPE" 
         TCGA-67-6216          TCGA-67-6217          TCGA-71-6725 
"C14ORF177 WILD-TYPE" "C14ORF177 WILD-TYPE" "C14ORF177 WILD-TYPE" 
         TCGA-73-4658          TCGA-73-4659          TCGA-73-4662 
"C14ORF177 WILD-TYPE" "C14ORF177 WILD-TYPE" "C14ORF177 WILD-TYPE" 
         TCGA-73-4666          TCGA-73-4668          TCGA-73-4670 
"C14ORF177 WILD-TYPE" "C14ORF177 WILD-TYPE" "C14ORF177 WILD-TYPE" 
         TCGA-73-4675          TCGA-73-4676          TCGA-73-4677 
"C14ORF177 WILD-TYPE" "C14ORF177 WILD-TYPE" "C14ORF177 WILD-TYPE" 
         TCGA-91-6828          TCGA-91-6829          TCGA-91-6831 
"C14ORF177 WILD-TYPE" "C14ORF177 WILD-TYPE" "C14ORF177 WILD-TYPE" 
         TCGA-91-6835          TCGA-91-6836 
"C14ORF177 WILD-TYPE" "C14ORF177 WILD-TYPE" 
[1] "hr=" "2.3"
D91V2, continuous
D91V3, binary
[1] "tbl2"
                     cls
clus                  [,1] [,2]
  C14ORF177 MUTATED      3    2
  C14ORF177 WILD-TYPE   90   77
        clus
vv       C14ORF177 MUTATED C14ORF177 WILD-TYPE
  FEMALE                 3                  90
  MALE                   2                  77
D91V4, continuous
D91V5, multiclass
D91V6, multiclass
    clus
vv   C14ORF177 MUTATED C14ORF177 WILD-TYPE
  T1                 0                  41
  T2                 5                 103
  T3                 0                  14
  T4                 0                   8
D91V7, multiclass
       clus
vv      C14ORF177 MUTATED C14ORF177 WILD-TYPE
  N0                    3                  92
  N1                    2                  35
  N2+N3                 0                  35
D91V8, multiclass
    clus
vv   C14ORF177 MUTATED C14ORF177 WILD-TYPE
  M0                 5                 132
  M1                 0                   9
  MX                 0                  22
D91V9, multiclass
     clus
vv    C14ORF177 MUTATED C14ORF177 WILD-TYPE
  I                   2                  86
  II                  3                  30
  III                 0                  39
  IV                  0                   9
D91V10, binary
[1] "tbl2"
                     cls
clus                  [,1] [,2]
  C14ORF177 MUTATED      0    5
  C14ORF177 WILD-TYPE   16  151
     clus
vv    C14ORF177 MUTATED C14ORF177 WILD-TYPE
  NO                  0                  16
  YES                 5                 151
D91V11, continuous
D91V12, continuous
[1] "Remove cluster labels:" "C14ORF177 MUTATED"     
clus
  C14ORF177 MUTATED C14ORF177 WILD-TYPE 
                  2                  80 
         TCGA-05-4384          TCGA-05-4390          TCGA-05-4396 
"C14ORF177 WILD-TYPE" "C14ORF177 WILD-TYPE" "C14ORF177 WILD-TYPE" 
         TCGA-05-4403          TCGA-05-4405          TCGA-05-4410 
"C14ORF177 WILD-TYPE" "C14ORF177 WILD-TYPE" "C14ORF177 WILD-TYPE" 
         TCGA-05-4415          TCGA-05-4417          TCGA-05-4424 
"C14ORF177 WILD-TYPE" "C14ORF177 WILD-TYPE" "C14ORF177 WILD-TYPE" 
         TCGA-05-4427          TCGA-05-4433          TCGA-05-5420 
"C14ORF177 WILD-TYPE" "C14ORF177 WILD-TYPE" "C14ORF177 WILD-TYPE" 
         TCGA-05-5423          TCGA-05-5425          TCGA-05-5428 
"C14ORF177 WILD-TYPE" "C14ORF177 WILD-TYPE" "C14ORF177 WILD-TYPE" 
         TCGA-35-4122          TCGA-35-4123          TCGA-35-5375 
"C14ORF177 WILD-TYPE" "C14ORF177 WILD-TYPE" "C14ORF177 WILD-TYPE" 
         TCGA-38-4629          TCGA-38-4632          TCGA-44-2655 
"C14ORF177 WILD-TYPE" "C14ORF177 WILD-TYPE" "C14ORF177 WILD-TYPE" 
         TCGA-44-2656          TCGA-44-2657          TCGA-44-2659 
"C14ORF177 WILD-TYPE" "C14ORF177 WILD-TYPE" "C14ORF177 WILD-TYPE" 
         TCGA-44-2662          TCGA-44-2668          TCGA-44-3398 
"C14ORF177 WILD-TYPE" "C14ORF177 WILD-TYPE" "C14ORF177 WILD-TYPE" 
         TCGA-44-3918          TCGA-44-4112          TCGA-44-5645 
"C14ORF177 WILD-TYPE" "C14ORF177 WILD-TYPE" "C14ORF177 WILD-TYPE" 
         TCGA-44-6145          TCGA-44-6146          TCGA-44-6147 
"C14ORF177 WILD-TYPE" "C14ORF177 WILD-TYPE" "C14ORF177 WILD-TYPE" 
         TCGA-44-6148          TCGA-44-6775          TCGA-44-6776 
"C14ORF177 WILD-TYPE" "C14ORF177 WILD-TYPE" "C14ORF177 WILD-TYPE" 
         TCGA-44-6777          TCGA-44-6778          TCGA-44-6779 
"C14ORF177 WILD-TYPE" "C14ORF177 WILD-TYPE" "C14ORF177 WILD-TYPE" 
         TCGA-49-4486          TCGA-49-4488          TCGA-49-4494 
"C14ORF177 WILD-TYPE" "C14ORF177 WILD-TYPE" "C14ORF177 WILD-TYPE" 
         TCGA-49-4505          TCGA-49-4507          TCGA-50-5051 
"C14ORF177 WILD-TYPE" "C14ORF177 WILD-TYPE" "C14ORF177 WILD-TYPE" 
         TCGA-50-5072          TCGA-50-5939          TCGA-50-5942 
"C14ORF177 WILD-TYPE" "C14ORF177 WILD-TYPE" "C14ORF177 WILD-TYPE" 
         TCGA-50-5946          TCGA-50-6594          TCGA-50-6595 
"C14ORF177 WILD-TYPE" "C14ORF177 WILD-TYPE" "C14ORF177 WILD-TYPE" 
         TCGA-55-1592          TCGA-55-1595          TCGA-55-6543 
"C14ORF177 WILD-TYPE" "C14ORF177 WILD-TYPE" "C14ORF177 WILD-TYPE" 
         TCGA-55-6712          TCGA-64-1680          TCGA-64-5774 
"C14ORF177 WILD-TYPE" "C14ORF177 WILD-TYPE" "C14ORF177 WILD-TYPE" 
         TCGA-64-5778          TCGA-64-5779          TCGA-64-5781 
"C14ORF177 WILD-TYPE" "C14ORF177 WILD-TYPE" "C14ORF177 WILD-TYPE" 
         TCGA-64-5815          TCGA-67-6217          TCGA-73-4659 
"C14ORF177 WILD-TYPE" "C14ORF177 WILD-TYPE" "C14ORF177 WILD-TYPE" 
         TCGA-73-4662          TCGA-73-4666          TCGA-73-4668 
"C14ORF177 WILD-TYPE" "C14ORF177 WILD-TYPE" "C14ORF177 WILD-TYPE" 
         TCGA-73-4670          TCGA-73-4675          TCGA-73-4676 
"C14ORF177 WILD-TYPE" "C14ORF177 WILD-TYPE" "C14ORF177 WILD-TYPE" 
         TCGA-73-4677          TCGA-75-5122          TCGA-75-5125 
"C14ORF177 WILD-TYPE" "C14ORF177 WILD-TYPE" "C14ORF177 WILD-TYPE" 
         TCGA-75-5126          TCGA-75-5146          TCGA-75-6206 
"C14ORF177 WILD-TYPE" "C14ORF177 WILD-TYPE" "C14ORF177 WILD-TYPE" 
         TCGA-75-6207          TCGA-80-5611          TCGA-91-6828 
"C14ORF177 WILD-TYPE" "C14ORF177 WILD-TYPE" "C14ORF177 WILD-TYPE" 
         TCGA-91-6829          TCGA-91-6835 
"C14ORF177 WILD-TYPE" "C14ORF177 WILD-TYPE" 
D91V13, multiclass
                                             clus
vv                                            C14ORF177 MUTATED
  CURRENT REFORMED SMOKER FOR < OR = 15 YEARS                 2
  CURRENT REFORMED SMOKER FOR > 15 YEARS                      1
  CURRENT SMOKER                                              1
  LIFELONG NON-SMOKER                                         1
                                             clus
vv                                            C14ORF177 WILD-TYPE
  CURRENT REFORMED SMOKER FOR < OR = 15 YEARS                  60
  CURRENT REFORMED SMOKER FOR > 15 YEARS                       45
  CURRENT SMOKER                                               27
  LIFELONG NON-SMOKER                                          23
D91V14, continuous
[1] "Remove cluster labels:" "C14ORF177 MUTATED"     
clus
  C14ORF177 MUTATED C14ORF177 WILD-TYPE 
                  1                  67 
         TCGA-05-4384          TCGA-05-4390          TCGA-05-4396 
"C14ORF177 WILD-TYPE" "C14ORF177 WILD-TYPE" "C14ORF177 WILD-TYPE" 
         TCGA-05-4405          TCGA-05-4410          TCGA-05-4415 
"C14ORF177 WILD-TYPE" "C14ORF177 WILD-TYPE" "C14ORF177 WILD-TYPE" 
         TCGA-05-4417          TCGA-05-4424          TCGA-05-4427 
"C14ORF177 WILD-TYPE" "C14ORF177 WILD-TYPE" "C14ORF177 WILD-TYPE" 
         TCGA-05-4433          TCGA-05-5420          TCGA-05-5423 
"C14ORF177 WILD-TYPE" "C14ORF177 WILD-TYPE" "C14ORF177 WILD-TYPE" 
         TCGA-05-5425          TCGA-05-5428          TCGA-35-4122 
"C14ORF177 WILD-TYPE" "C14ORF177 WILD-TYPE" "C14ORF177 WILD-TYPE" 
         TCGA-35-4123          TCGA-35-5375          TCGA-38-4625 
"C14ORF177 WILD-TYPE" "C14ORF177 WILD-TYPE" "C14ORF177 WILD-TYPE" 
         TCGA-38-4626          TCGA-44-2655          TCGA-44-2656 
"C14ORF177 WILD-TYPE" "C14ORF177 WILD-TYPE" "C14ORF177 WILD-TYPE" 
         TCGA-44-2657          TCGA-44-2659          TCGA-44-2662 
"C14ORF177 WILD-TYPE" "C14ORF177 WILD-TYPE" "C14ORF177 WILD-TYPE" 
         TCGA-44-2666          TCGA-44-2668          TCGA-44-3396 
"C14ORF177 WILD-TYPE" "C14ORF177 WILD-TYPE" "C14ORF177 WILD-TYPE" 
         TCGA-44-3398          TCGA-44-3918          TCGA-44-4112 
"C14ORF177 WILD-TYPE" "C14ORF177 WILD-TYPE" "C14ORF177 WILD-TYPE" 
         TCGA-44-5645          TCGA-44-6144          TCGA-44-6145 
"C14ORF177 WILD-TYPE" "C14ORF177 WILD-TYPE" "C14ORF177 WILD-TYPE" 
         TCGA-44-6147          TCGA-44-6148          TCGA-44-6774 
"C14ORF177 WILD-TYPE" "C14ORF177 WILD-TYPE" "C14ORF177 WILD-TYPE" 
         TCGA-44-6775          TCGA-44-6776          TCGA-44-6777 
"C14ORF177 WILD-TYPE" "C14ORF177 WILD-TYPE" "C14ORF177 WILD-TYPE" 
         TCGA-44-6778          TCGA-44-6779          TCGA-49-4486 
"C14ORF177 WILD-TYPE" "C14ORF177 WILD-TYPE" "C14ORF177 WILD-TYPE" 
         TCGA-49-4494          TCGA-49-4505          TCGA-55-1592 
"C14ORF177 WILD-TYPE" "C14ORF177 WILD-TYPE" "C14ORF177 WILD-TYPE" 
         TCGA-55-1594          TCGA-55-1595          TCGA-55-1596 
"C14ORF177 WILD-TYPE" "C14ORF177 WILD-TYPE" "C14ORF177 WILD-TYPE" 
         TCGA-55-5899          TCGA-55-6642          TCGA-55-6712 
"C14ORF177 WILD-TYPE" "C14ORF177 WILD-TYPE" "C14ORF177 WILD-TYPE" 
         TCGA-64-1677          TCGA-64-1680          TCGA-64-5774 
"C14ORF177 WILD-TYPE" "C14ORF177 WILD-TYPE" "C14ORF177 WILD-TYPE" 
         TCGA-64-5775          TCGA-64-5778          TCGA-64-5779 
"C14ORF177 WILD-TYPE" "C14ORF177 WILD-TYPE" "C14ORF177 WILD-TYPE" 
         TCGA-64-5781          TCGA-73-4659          TCGA-73-4662 
"C14ORF177 WILD-TYPE" "C14ORF177 WILD-TYPE" "C14ORF177 WILD-TYPE" 
         TCGA-73-4666          TCGA-73-4668          TCGA-73-4670 
"C14ORF177 WILD-TYPE" "C14ORF177 WILD-TYPE" "C14ORF177 WILD-TYPE" 
         TCGA-73-4675          TCGA-73-4676          TCGA-91-6829 
"C14ORF177 WILD-TYPE" "C14ORF177 WILD-TYPE" "C14ORF177 WILD-TYPE" 
         TCGA-91-6836 
"C14ORF177 WILD-TYPE" 

Clustering(92) Variable = PSG6 MUTATION ANALYSIS
D92V1, survival
                sevent
clus2             0  1
  PSG6 MUTATED    7  3
  PSG6 WILD-TYPE 92 47
  PSG6 MUTATED PSG6 WILD-TYPE 
            10            139 
  PSG6 MUTATED PSG6 WILD-TYPE 
             3             47 
$`PSG6 MUTATED`
TCGA-05-4396 TCGA-05-4424 TCGA-05-4427 TCGA-38-4625 TCGA-38-4626 TCGA-38-4632 
        9.96        30.02        26.01        47.61        85.32        44.61 
TCGA-49-4514 TCGA-50-5049 TCGA-50-5066 TCGA-73-4677 
       43.20        48.82         9.76         1.25 

$`PSG6 WILD-TYPE`
TCGA-05-4249 TCGA-05-4250 TCGA-05-4382 TCGA-05-4384 TCGA-05-4390 TCGA-05-4397 
       38.07         3.98        19.92        14.01        37.02        24.03 
TCGA-05-4398 TCGA-05-4402 TCGA-05-4405 TCGA-05-4415 TCGA-05-4417 TCGA-05-4418 
       47.05         8.02        20.05         2.96        14.93         8.98 
TCGA-05-4420 TCGA-05-4426 TCGA-05-4430 TCGA-05-4432 TCGA-05-4433 TCGA-05-4434 
       29.95        26.01        25.02        25.02        24.00        15.02 
TCGA-05-5420 TCGA-05-5423 TCGA-05-5425 TCGA-05-5429 TCGA-05-5715 TCGA-35-3615 
        1.02         4.96         2.96         0.99         2.04         0.46 
TCGA-35-4122 TCGA-35-4123 TCGA-35-5375 TCGA-38-4627 TCGA-38-4628 TCGA-38-4629 
        7.36         5.95         8.68        37.71        49.02        28.37 
TCGA-38-4630 TCGA-38-4631 TCGA-38-6178 TCGA-44-2655 TCGA-44-2656 TCGA-44-2657 
       35.28        11.64         5.19        18.87        19.10        13.15 
TCGA-44-2659 TCGA-44-2661 TCGA-44-2662 TCGA-44-2665 TCGA-44-2666 TCGA-44-2668 
       17.39         3.39        15.78        13.15         3.19         8.09 
TCGA-44-3396 TCGA-44-3398 TCGA-44-3918 TCGA-44-3919 TCGA-44-4112 TCGA-44-5643 
       10.22         8.32         6.44         6.21         4.60         3.48 
TCGA-44-5645 TCGA-44-6144 TCGA-44-6145 TCGA-44-6146 TCGA-44-6147 TCGA-44-6148 
        6.84         0.30         3.35         9.93         7.76         3.12 
TCGA-44-6774 TCGA-44-6775 TCGA-44-6776 TCGA-44-6777 TCGA-44-6778 TCGA-44-6779 
        5.42         2.70        63.72        32.45        36.49        16.41 
TCGA-49-4486 TCGA-49-4487 TCGA-49-4488 TCGA-49-4490 TCGA-49-4494 TCGA-49-4501 
       76.21        28.11        28.57        12.66        35.54        46.72 
TCGA-49-4505 TCGA-49-4506 TCGA-49-4507 TCGA-49-4510 TCGA-49-4512 TCGA-49-6742 
       14.07        32.84         8.81        29.46        29.75        15.02 
TCGA-49-6743 TCGA-49-6744 TCGA-49-6745 TCGA-50-5044 TCGA-50-5045 TCGA-50-5051 
       12.13        12.99         4.93        20.48        71.47        14.96 
TCGA-50-5055 TCGA-50-5068 TCGA-50-5072 TCGA-50-5930 TCGA-50-5931 TCGA-50-5932 
       25.81        49.28         8.05         9.27         8.78        35.87 
TCGA-50-5933 TCGA-50-5935 TCGA-50-5936 TCGA-50-5939 TCGA-50-5941 TCGA-50-5942 
       77.88        21.47         8.45        15.12         9.37         4.44 
TCGA-50-5944 TCGA-50-5946 TCGA-50-6590 TCGA-50-6591 TCGA-50-6592 TCGA-50-6593 
       12.26        11.47        42.31         3.88        25.51        11.05 
TCGA-50-6594 TCGA-50-6595 TCGA-50-6597 TCGA-55-1592 TCGA-55-1594 TCGA-55-1595 
       12.16         6.21        33.37        23.05        38.73        48.62 
TCGA-55-1596 TCGA-55-5899 TCGA-55-6543 TCGA-55-6642 TCGA-55-6712 TCGA-64-1676 
       45.17         2.86         0.07        32.61         0.79        56.81 
TCGA-64-1677 TCGA-64-1678 TCGA-64-1680 TCGA-64-5774 TCGA-64-5775 TCGA-64-5778 
       20.65        39.09        37.02        83.84         0.10        30.44 
TCGA-64-5779 TCGA-64-5781 TCGA-64-5815 TCGA-67-3770 TCGA-67-3771 TCGA-67-3772 
       16.67        39.52         7.33         0.99         1.97         0.59 
TCGA-67-3773 TCGA-67-3774 TCGA-67-6215 TCGA-67-6216 TCGA-67-6217 TCGA-71-6725 
        2.04         0.59         0.89         0.69        13.87         2.01 
TCGA-73-4658 TCGA-73-4659 TCGA-73-4662 TCGA-73-4666 TCGA-73-4668 TCGA-73-4670 
       52.57        23.38        29.95        20.28        15.35         0.46 
TCGA-73-4675 TCGA-73-4676 TCGA-91-6828 TCGA-91-6829 TCGA-91-6831 TCGA-91-6835 
        1.32         4.01         1.22        41.33         1.28         1.15 
TCGA-91-6836 
        0.36 

  PSG6 MUTATED PSG6 WILD-TYPE 
          1.25           0.07 
  PSG6 MUTATED PSG6 WILD-TYPE 
         85.32          83.84 
  PSG6 MUTATED PSG6 WILD-TYPE 
         36.61          13.15 
[1] "1.2 - 85.3 (36.6)" "0.1 - 83.8 (13.2)"
    TCGA-05-4249     TCGA-05-4250     TCGA-05-4382     TCGA-05-4384 
"PSG6 WILD-TYPE" "PSG6 WILD-TYPE" "PSG6 WILD-TYPE" "PSG6 WILD-TYPE" 
    TCGA-05-4390     TCGA-05-4396     TCGA-05-4397     TCGA-05-4398 
"PSG6 WILD-TYPE"   "PSG6 MUTATED" "PSG6 WILD-TYPE" "PSG6 WILD-TYPE" 
    TCGA-05-4402     TCGA-05-4405     TCGA-05-4415     TCGA-05-4417 
"PSG6 WILD-TYPE" "PSG6 WILD-TYPE" "PSG6 WILD-TYPE" "PSG6 WILD-TYPE" 
    TCGA-05-4418     TCGA-05-4420     TCGA-05-4424     TCGA-05-4426 
"PSG6 WILD-TYPE" "PSG6 WILD-TYPE"   "PSG6 MUTATED" "PSG6 WILD-TYPE" 
    TCGA-05-4427     TCGA-05-4430     TCGA-05-4432     TCGA-05-4433 
  "PSG6 MUTATED" "PSG6 WILD-TYPE" "PSG6 WILD-TYPE" "PSG6 WILD-TYPE" 
    TCGA-05-4434     TCGA-05-5420     TCGA-05-5423     TCGA-05-5425 
"PSG6 WILD-TYPE" "PSG6 WILD-TYPE" "PSG6 WILD-TYPE" "PSG6 WILD-TYPE" 
    TCGA-05-5429     TCGA-05-5715     TCGA-35-3615     TCGA-35-4122 
"PSG6 WILD-TYPE" "PSG6 WILD-TYPE" "PSG6 WILD-TYPE" "PSG6 WILD-TYPE" 
    TCGA-35-4123     TCGA-35-5375     TCGA-38-4625     TCGA-38-4626 
"PSG6 WILD-TYPE" "PSG6 WILD-TYPE"   "PSG6 MUTATED"   "PSG6 MUTATED" 
    TCGA-38-4627     TCGA-38-4628     TCGA-38-4629     TCGA-38-4630 
"PSG6 WILD-TYPE" "PSG6 WILD-TYPE" "PSG6 WILD-TYPE" "PSG6 WILD-TYPE" 
    TCGA-38-4631     TCGA-38-4632     TCGA-38-6178     TCGA-44-2655 
"PSG6 WILD-TYPE"   "PSG6 MUTATED" "PSG6 WILD-TYPE" "PSG6 WILD-TYPE" 
    TCGA-44-2656     TCGA-44-2657     TCGA-44-2659     TCGA-44-2661 
"PSG6 WILD-TYPE" "PSG6 WILD-TYPE" "PSG6 WILD-TYPE" "PSG6 WILD-TYPE" 
    TCGA-44-2662     TCGA-44-2665     TCGA-44-2666     TCGA-44-2668 
"PSG6 WILD-TYPE" "PSG6 WILD-TYPE" "PSG6 WILD-TYPE" "PSG6 WILD-TYPE" 
    TCGA-44-3396     TCGA-44-3398     TCGA-44-3918     TCGA-44-3919 
"PSG6 WILD-TYPE" "PSG6 WILD-TYPE" "PSG6 WILD-TYPE" "PSG6 WILD-TYPE" 
    TCGA-44-4112     TCGA-44-5643     TCGA-44-5645     TCGA-44-6144 
"PSG6 WILD-TYPE" "PSG6 WILD-TYPE" "PSG6 WILD-TYPE" "PSG6 WILD-TYPE" 
    TCGA-44-6145     TCGA-44-6146     TCGA-44-6147     TCGA-44-6148 
"PSG6 WILD-TYPE" "PSG6 WILD-TYPE" "PSG6 WILD-TYPE" "PSG6 WILD-TYPE" 
    TCGA-44-6774     TCGA-44-6775     TCGA-44-6776     TCGA-44-6777 
"PSG6 WILD-TYPE" "PSG6 WILD-TYPE" "PSG6 WILD-TYPE" "PSG6 WILD-TYPE" 
    TCGA-44-6778     TCGA-44-6779     TCGA-49-4486     TCGA-49-4487 
"PSG6 WILD-TYPE" "PSG6 WILD-TYPE" "PSG6 WILD-TYPE" "PSG6 WILD-TYPE" 
    TCGA-49-4488     TCGA-49-4490     TCGA-49-4494     TCGA-49-4501 
"PSG6 WILD-TYPE" "PSG6 WILD-TYPE" "PSG6 WILD-TYPE" "PSG6 WILD-TYPE" 
    TCGA-49-4505     TCGA-49-4506     TCGA-49-4507     TCGA-49-4510 
"PSG6 WILD-TYPE" "PSG6 WILD-TYPE" "PSG6 WILD-TYPE" "PSG6 WILD-TYPE" 
    TCGA-49-4512     TCGA-49-4514     TCGA-49-6742     TCGA-49-6743 
"PSG6 WILD-TYPE"   "PSG6 MUTATED" "PSG6 WILD-TYPE" "PSG6 WILD-TYPE" 
    TCGA-49-6744     TCGA-49-6745     TCGA-50-5044     TCGA-50-5045 
"PSG6 WILD-TYPE" "PSG6 WILD-TYPE" "PSG6 WILD-TYPE" "PSG6 WILD-TYPE" 
    TCGA-50-5049     TCGA-50-5051     TCGA-50-5055     TCGA-50-5066 
  "PSG6 MUTATED" "PSG6 WILD-TYPE" "PSG6 WILD-TYPE"   "PSG6 MUTATED" 
    TCGA-50-5068     TCGA-50-5072     TCGA-50-5930     TCGA-50-5931 
"PSG6 WILD-TYPE" "PSG6 WILD-TYPE" "PSG6 WILD-TYPE" "PSG6 WILD-TYPE" 
    TCGA-50-5932     TCGA-50-5933     TCGA-50-5935     TCGA-50-5936 
"PSG6 WILD-TYPE" "PSG6 WILD-TYPE" "PSG6 WILD-TYPE" "PSG6 WILD-TYPE" 
    TCGA-50-5939     TCGA-50-5941     TCGA-50-5942     TCGA-50-5944 
"PSG6 WILD-TYPE" "PSG6 WILD-TYPE" "PSG6 WILD-TYPE" "PSG6 WILD-TYPE" 
    TCGA-50-5946     TCGA-50-6590     TCGA-50-6591     TCGA-50-6592 
"PSG6 WILD-TYPE" "PSG6 WILD-TYPE" "PSG6 WILD-TYPE" "PSG6 WILD-TYPE" 
    TCGA-50-6593     TCGA-50-6594     TCGA-50-6595     TCGA-50-6597 
"PSG6 WILD-TYPE" "PSG6 WILD-TYPE" "PSG6 WILD-TYPE" "PSG6 WILD-TYPE" 
    TCGA-55-1592     TCGA-55-1594     TCGA-55-1595     TCGA-55-1596 
"PSG6 WILD-TYPE" "PSG6 WILD-TYPE" "PSG6 WILD-TYPE" "PSG6 WILD-TYPE" 
    TCGA-55-5899     TCGA-55-6543     TCGA-55-6642     TCGA-55-6712 
"PSG6 WILD-TYPE" "PSG6 WILD-TYPE" "PSG6 WILD-TYPE" "PSG6 WILD-TYPE" 
    TCGA-64-1676     TCGA-64-1677     TCGA-64-1678     TCGA-64-1680 
"PSG6 WILD-TYPE" "PSG6 WILD-TYPE" "PSG6 WILD-TYPE" "PSG6 WILD-TYPE" 
    TCGA-64-5774     TCGA-64-5775     TCGA-64-5778     TCGA-64-5779 
"PSG6 WILD-TYPE" "PSG6 WILD-TYPE" "PSG6 WILD-TYPE" "PSG6 WILD-TYPE" 
    TCGA-64-5781     TCGA-64-5815     TCGA-67-3770     TCGA-67-3771 
"PSG6 WILD-TYPE" "PSG6 WILD-TYPE" "PSG6 WILD-TYPE" "PSG6 WILD-TYPE" 
    TCGA-67-3772     TCGA-67-3773     TCGA-67-3774     TCGA-67-6215 
"PSG6 WILD-TYPE" "PSG6 WILD-TYPE" "PSG6 WILD-TYPE" "PSG6 WILD-TYPE" 
    TCGA-67-6216     TCGA-67-6217     TCGA-71-6725     TCGA-73-4658 
"PSG6 WILD-TYPE" "PSG6 WILD-TYPE" "PSG6 WILD-TYPE" "PSG6 WILD-TYPE" 
    TCGA-73-4659     TCGA-73-4662     TCGA-73-4666     TCGA-73-4668 
"PSG6 WILD-TYPE" "PSG6 WILD-TYPE" "PSG6 WILD-TYPE" "PSG6 WILD-TYPE" 
    TCGA-73-4670     TCGA-73-4675     TCGA-73-4676     TCGA-73-4677 
"PSG6 WILD-TYPE" "PSG6 WILD-TYPE" "PSG6 WILD-TYPE"   "PSG6 MUTATED" 
    TCGA-91-6828     TCGA-91-6829     TCGA-91-6831     TCGA-91-6835 
"PSG6 WILD-TYPE" "PSG6 WILD-TYPE" "PSG6 WILD-TYPE" "PSG6 WILD-TYPE" 
    TCGA-91-6836 
"PSG6 WILD-TYPE" 
    TCGA-05-4249     TCGA-05-4250     TCGA-05-4382     TCGA-05-4384 
"PSG6 WILD-TYPE" "PSG6 WILD-TYPE" "PSG6 WILD-TYPE" "PSG6 WILD-TYPE" 
    TCGA-05-4390     TCGA-05-4396     TCGA-05-4397     TCGA-05-4398 
"PSG6 WILD-TYPE"   "PSG6 MUTATED" "PSG6 WILD-TYPE" "PSG6 WILD-TYPE" 
    TCGA-05-4402     TCGA-05-4405     TCGA-05-4415     TCGA-05-4417 
"PSG6 WILD-TYPE" "PSG6 WILD-TYPE" "PSG6 WILD-TYPE" "PSG6 WILD-TYPE" 
    TCGA-05-4418     TCGA-05-4420     TCGA-05-4424     TCGA-05-4426 
"PSG6 WILD-TYPE" "PSG6 WILD-TYPE"   "PSG6 MUTATED" "PSG6 WILD-TYPE" 
    TCGA-05-4427     TCGA-05-4430     TCGA-05-4432     TCGA-05-4433 
  "PSG6 MUTATED" "PSG6 WILD-TYPE" "PSG6 WILD-TYPE" "PSG6 WILD-TYPE" 
    TCGA-05-4434     TCGA-05-5420     TCGA-05-5423     TCGA-05-5425 
"PSG6 WILD-TYPE" "PSG6 WILD-TYPE" "PSG6 WILD-TYPE" "PSG6 WILD-TYPE" 
    TCGA-05-5429     TCGA-05-5715     TCGA-35-3615     TCGA-35-4122 
"PSG6 WILD-TYPE" "PSG6 WILD-TYPE" "PSG6 WILD-TYPE" "PSG6 WILD-TYPE" 
    TCGA-35-4123     TCGA-35-5375     TCGA-38-4625     TCGA-38-4626 
"PSG6 WILD-TYPE" "PSG6 WILD-TYPE"   "PSG6 MUTATED"   "PSG6 MUTATED" 
    TCGA-38-4627     TCGA-38-4628     TCGA-38-4629     TCGA-38-4630 
"PSG6 WILD-TYPE" "PSG6 WILD-TYPE" "PSG6 WILD-TYPE" "PSG6 WILD-TYPE" 
    TCGA-38-4631     TCGA-38-4632     TCGA-38-6178     TCGA-44-2655 
"PSG6 WILD-TYPE"   "PSG6 MUTATED" "PSG6 WILD-TYPE" "PSG6 WILD-TYPE" 
    TCGA-44-2656     TCGA-44-2657     TCGA-44-2659     TCGA-44-2661 
"PSG6 WILD-TYPE" "PSG6 WILD-TYPE" "PSG6 WILD-TYPE" "PSG6 WILD-TYPE" 
    TCGA-44-2662     TCGA-44-2665     TCGA-44-2666     TCGA-44-2668 
"PSG6 WILD-TYPE" "PSG6 WILD-TYPE" "PSG6 WILD-TYPE" "PSG6 WILD-TYPE" 
    TCGA-44-3396     TCGA-44-3398     TCGA-44-3918     TCGA-44-3919 
"PSG6 WILD-TYPE" "PSG6 WILD-TYPE" "PSG6 WILD-TYPE" "PSG6 WILD-TYPE" 
    TCGA-44-4112     TCGA-44-5643     TCGA-44-5645     TCGA-44-6144 
"PSG6 WILD-TYPE" "PSG6 WILD-TYPE" "PSG6 WILD-TYPE" "PSG6 WILD-TYPE" 
    TCGA-44-6145     TCGA-44-6146     TCGA-44-6147     TCGA-44-6148 
"PSG6 WILD-TYPE" "PSG6 WILD-TYPE" "PSG6 WILD-TYPE" "PSG6 WILD-TYPE" 
    TCGA-44-6774     TCGA-44-6775     TCGA-44-6776     TCGA-44-6777 
"PSG6 WILD-TYPE" "PSG6 WILD-TYPE" "PSG6 WILD-TYPE" "PSG6 WILD-TYPE" 
    TCGA-44-6778     TCGA-44-6779     TCGA-49-4486     TCGA-49-4487 
"PSG6 WILD-TYPE" "PSG6 WILD-TYPE" "PSG6 WILD-TYPE" "PSG6 WILD-TYPE" 
    TCGA-49-4488     TCGA-49-4490     TCGA-49-4494     TCGA-49-4501 
"PSG6 WILD-TYPE" "PSG6 WILD-TYPE" "PSG6 WILD-TYPE" "PSG6 WILD-TYPE" 
    TCGA-49-4505     TCGA-49-4506     TCGA-49-4507     TCGA-49-4510 
"PSG6 WILD-TYPE" "PSG6 WILD-TYPE" "PSG6 WILD-TYPE" "PSG6 WILD-TYPE" 
    TCGA-49-4512     TCGA-49-4514     TCGA-49-6742     TCGA-49-6743 
"PSG6 WILD-TYPE"   "PSG6 MUTATED" "PSG6 WILD-TYPE" "PSG6 WILD-TYPE" 
    TCGA-49-6744     TCGA-49-6745     TCGA-50-5044     TCGA-50-5045 
"PSG6 WILD-TYPE" "PSG6 WILD-TYPE" "PSG6 WILD-TYPE" "PSG6 WILD-TYPE" 
    TCGA-50-5049     TCGA-50-5051     TCGA-50-5055     TCGA-50-5066 
  "PSG6 MUTATED" "PSG6 WILD-TYPE" "PSG6 WILD-TYPE"   "PSG6 MUTATED" 
    TCGA-50-5068     TCGA-50-5072     TCGA-50-5930     TCGA-50-5931 
"PSG6 WILD-TYPE" "PSG6 WILD-TYPE" "PSG6 WILD-TYPE" "PSG6 WILD-TYPE" 
    TCGA-50-5932     TCGA-50-5933     TCGA-50-5935     TCGA-50-5936 
"PSG6 WILD-TYPE" "PSG6 WILD-TYPE" "PSG6 WILD-TYPE" "PSG6 WILD-TYPE" 
    TCGA-50-5939     TCGA-50-5941     TCGA-50-5942     TCGA-50-5944 
"PSG6 WILD-TYPE" "PSG6 WILD-TYPE" "PSG6 WILD-TYPE" "PSG6 WILD-TYPE" 
    TCGA-50-5946     TCGA-50-6590     TCGA-50-6591     TCGA-50-6592 
"PSG6 WILD-TYPE" "PSG6 WILD-TYPE" "PSG6 WILD-TYPE" "PSG6 WILD-TYPE" 
    TCGA-50-6593     TCGA-50-6594     TCGA-50-6595     TCGA-50-6597 
"PSG6 WILD-TYPE" "PSG6 WILD-TYPE" "PSG6 WILD-TYPE" "PSG6 WILD-TYPE" 
    TCGA-55-1592     TCGA-55-1594     TCGA-55-1595     TCGA-55-1596 
"PSG6 WILD-TYPE" "PSG6 WILD-TYPE" "PSG6 WILD-TYPE" "PSG6 WILD-TYPE" 
    TCGA-55-5899     TCGA-55-6543     TCGA-55-6642     TCGA-55-6712 
"PSG6 WILD-TYPE" "PSG6 WILD-TYPE" "PSG6 WILD-TYPE" "PSG6 WILD-TYPE" 
    TCGA-64-1676     TCGA-64-1677     TCGA-64-1678     TCGA-64-1680 
"PSG6 WILD-TYPE" "PSG6 WILD-TYPE" "PSG6 WILD-TYPE" "PSG6 WILD-TYPE" 
    TCGA-64-5774     TCGA-64-5775     TCGA-64-5778     TCGA-64-5779 
"PSG6 WILD-TYPE" "PSG6 WILD-TYPE" "PSG6 WILD-TYPE" "PSG6 WILD-TYPE" 
    TCGA-64-5781     TCGA-64-5815     TCGA-67-3770     TCGA-67-3771 
"PSG6 WILD-TYPE" "PSG6 WILD-TYPE" "PSG6 WILD-TYPE" "PSG6 WILD-TYPE" 
    TCGA-67-3772     TCGA-67-3773     TCGA-67-3774     TCGA-67-6215 
"PSG6 WILD-TYPE" "PSG6 WILD-TYPE" "PSG6 WILD-TYPE" "PSG6 WILD-TYPE" 
    TCGA-67-6216     TCGA-67-6217     TCGA-71-6725     TCGA-73-4658 
"PSG6 WILD-TYPE" "PSG6 WILD-TYPE" "PSG6 WILD-TYPE" "PSG6 WILD-TYPE" 
    TCGA-73-4659     TCGA-73-4662     TCGA-73-4666     TCGA-73-4668 
"PSG6 WILD-TYPE" "PSG6 WILD-TYPE" "PSG6 WILD-TYPE" "PSG6 WILD-TYPE" 
    TCGA-73-4670     TCGA-73-4675     TCGA-73-4676     TCGA-73-4677 
"PSG6 WILD-TYPE" "PSG6 WILD-TYPE" "PSG6 WILD-TYPE"   "PSG6 MUTATED" 
    TCGA-91-6828     TCGA-91-6829     TCGA-91-6831     TCGA-91-6835 
"PSG6 WILD-TYPE" "PSG6 WILD-TYPE" "PSG6 WILD-TYPE" "PSG6 WILD-TYPE" 
    TCGA-91-6836 
"PSG6 WILD-TYPE" 
    TCGA-05-4249     TCGA-05-4250     TCGA-05-4382     TCGA-05-4384 
"PSG6 WILD-TYPE" "PSG6 WILD-TYPE" "PSG6 WILD-TYPE" "PSG6 WILD-TYPE" 
    TCGA-05-4390     TCGA-05-4396     TCGA-05-4397     TCGA-05-4398 
"PSG6 WILD-TYPE"   "PSG6 MUTATED" "PSG6 WILD-TYPE" "PSG6 WILD-TYPE" 
    TCGA-05-4402     TCGA-05-4405     TCGA-05-4415     TCGA-05-4417 
"PSG6 WILD-TYPE" "PSG6 WILD-TYPE" "PSG6 WILD-TYPE" "PSG6 WILD-TYPE" 
    TCGA-05-4418     TCGA-05-4420     TCGA-05-4424     TCGA-05-4426 
"PSG6 WILD-TYPE" "PSG6 WILD-TYPE"   "PSG6 MUTATED" "PSG6 WILD-TYPE" 
    TCGA-05-4427     TCGA-05-4430     TCGA-05-4432     TCGA-05-4433 
  "PSG6 MUTATED" "PSG6 WILD-TYPE" "PSG6 WILD-TYPE" "PSG6 WILD-TYPE" 
    TCGA-05-4434     TCGA-05-5420     TCGA-05-5423     TCGA-05-5425 
"PSG6 WILD-TYPE" "PSG6 WILD-TYPE" "PSG6 WILD-TYPE" "PSG6 WILD-TYPE" 
    TCGA-05-5429     TCGA-05-5715     TCGA-35-3615     TCGA-35-4122 
"PSG6 WILD-TYPE" "PSG6 WILD-TYPE" "PSG6 WILD-TYPE" "PSG6 WILD-TYPE" 
    TCGA-35-4123     TCGA-35-5375     TCGA-38-4625     TCGA-38-4626 
"PSG6 WILD-TYPE" "PSG6 WILD-TYPE"   "PSG6 MUTATED"   "PSG6 MUTATED" 
    TCGA-38-4627     TCGA-38-4628     TCGA-38-4629     TCGA-38-4630 
"PSG6 WILD-TYPE" "PSG6 WILD-TYPE" "PSG6 WILD-TYPE" "PSG6 WILD-TYPE" 
    TCGA-38-4631     TCGA-38-4632     TCGA-38-6178     TCGA-44-2655 
"PSG6 WILD-TYPE"   "PSG6 MUTATED" "PSG6 WILD-TYPE" "PSG6 WILD-TYPE" 
    TCGA-44-2656     TCGA-44-2657     TCGA-44-2659     TCGA-44-2661 
"PSG6 WILD-TYPE" "PSG6 WILD-TYPE" "PSG6 WILD-TYPE" "PSG6 WILD-TYPE" 
    TCGA-44-2662     TCGA-44-2665     TCGA-44-2666     TCGA-44-2668 
"PSG6 WILD-TYPE" "PSG6 WILD-TYPE" "PSG6 WILD-TYPE" "PSG6 WILD-TYPE" 
    TCGA-44-3396     TCGA-44-3398     TCGA-44-3918     TCGA-44-3919 
"PSG6 WILD-TYPE" "PSG6 WILD-TYPE" "PSG6 WILD-TYPE" "PSG6 WILD-TYPE" 
    TCGA-44-4112     TCGA-44-5643     TCGA-44-5645     TCGA-44-6144 
"PSG6 WILD-TYPE" "PSG6 WILD-TYPE" "PSG6 WILD-TYPE" "PSG6 WILD-TYPE" 
    TCGA-44-6145     TCGA-44-6146     TCGA-44-6147     TCGA-44-6148 
"PSG6 WILD-TYPE" "PSG6 WILD-TYPE" "PSG6 WILD-TYPE" "PSG6 WILD-TYPE" 
    TCGA-44-6774     TCGA-44-6775     TCGA-44-6776     TCGA-44-6777 
"PSG6 WILD-TYPE" "PSG6 WILD-TYPE" "PSG6 WILD-TYPE" "PSG6 WILD-TYPE" 
    TCGA-44-6778     TCGA-44-6779     TCGA-49-4486     TCGA-49-4487 
"PSG6 WILD-TYPE" "PSG6 WILD-TYPE" "PSG6 WILD-TYPE" "PSG6 WILD-TYPE" 
    TCGA-49-4488     TCGA-49-4490     TCGA-49-4494     TCGA-49-4501 
"PSG6 WILD-TYPE" "PSG6 WILD-TYPE" "PSG6 WILD-TYPE" "PSG6 WILD-TYPE" 
    TCGA-49-4505     TCGA-49-4506     TCGA-49-4507     TCGA-49-4510 
"PSG6 WILD-TYPE" "PSG6 WILD-TYPE" "PSG6 WILD-TYPE" "PSG6 WILD-TYPE" 
    TCGA-49-4512     TCGA-49-4514     TCGA-49-6742     TCGA-49-6743 
"PSG6 WILD-TYPE"   "PSG6 MUTATED" "PSG6 WILD-TYPE" "PSG6 WILD-TYPE" 
    TCGA-49-6744     TCGA-49-6745     TCGA-50-5044     TCGA-50-5045 
"PSG6 WILD-TYPE" "PSG6 WILD-TYPE" "PSG6 WILD-TYPE" "PSG6 WILD-TYPE" 
    TCGA-50-5049     TCGA-50-5051     TCGA-50-5055     TCGA-50-5066 
  "PSG6 MUTATED" "PSG6 WILD-TYPE" "PSG6 WILD-TYPE"   "PSG6 MUTATED" 
    TCGA-50-5068     TCGA-50-5072     TCGA-50-5930     TCGA-50-5931 
"PSG6 WILD-TYPE" "PSG6 WILD-TYPE" "PSG6 WILD-TYPE" "PSG6 WILD-TYPE" 
    TCGA-50-5932     TCGA-50-5933     TCGA-50-5935     TCGA-50-5936 
"PSG6 WILD-TYPE" "PSG6 WILD-TYPE" "PSG6 WILD-TYPE" "PSG6 WILD-TYPE" 
    TCGA-50-5939     TCGA-50-5941     TCGA-50-5942     TCGA-50-5944 
"PSG6 WILD-TYPE" "PSG6 WILD-TYPE" "PSG6 WILD-TYPE" "PSG6 WILD-TYPE" 
    TCGA-50-5946     TCGA-50-6590     TCGA-50-6591     TCGA-50-6592 
"PSG6 WILD-TYPE" "PSG6 WILD-TYPE" "PSG6 WILD-TYPE" "PSG6 WILD-TYPE" 
    TCGA-50-6593     TCGA-50-6594     TCGA-50-6595     TCGA-50-6597 
"PSG6 WILD-TYPE" "PSG6 WILD-TYPE" "PSG6 WILD-TYPE" "PSG6 WILD-TYPE" 
    TCGA-55-1592     TCGA-55-1594     TCGA-55-1595     TCGA-55-1596 
"PSG6 WILD-TYPE" "PSG6 WILD-TYPE" "PSG6 WILD-TYPE" "PSG6 WILD-TYPE" 
    TCGA-55-5899     TCGA-55-6543     TCGA-55-6642     TCGA-55-6712 
"PSG6 WILD-TYPE" "PSG6 WILD-TYPE" "PSG6 WILD-TYPE" "PSG6 WILD-TYPE" 
    TCGA-64-1676     TCGA-64-1677     TCGA-64-1678     TCGA-64-1680 
"PSG6 WILD-TYPE" "PSG6 WILD-TYPE" "PSG6 WILD-TYPE" "PSG6 WILD-TYPE" 
    TCGA-64-5774     TCGA-64-5775     TCGA-64-5778     TCGA-64-5779 
"PSG6 WILD-TYPE" "PSG6 WILD-TYPE" "PSG6 WILD-TYPE" "PSG6 WILD-TYPE" 
    TCGA-64-5781     TCGA-64-5815     TCGA-67-3770     TCGA-67-3771 
"PSG6 WILD-TYPE" "PSG6 WILD-TYPE" "PSG6 WILD-TYPE" "PSG6 WILD-TYPE" 
    TCGA-67-3772     TCGA-67-3773     TCGA-67-3774     TCGA-67-6215 
"PSG6 WILD-TYPE" "PSG6 WILD-TYPE" "PSG6 WILD-TYPE" "PSG6 WILD-TYPE" 
    TCGA-67-6216     TCGA-67-6217     TCGA-71-6725     TCGA-73-4658 
"PSG6 WILD-TYPE" "PSG6 WILD-TYPE" "PSG6 WILD-TYPE" "PSG6 WILD-TYPE" 
    TCGA-73-4659     TCGA-73-4662     TCGA-73-4666     TCGA-73-4668 
"PSG6 WILD-TYPE" "PSG6 WILD-TYPE" "PSG6 WILD-TYPE" "PSG6 WILD-TYPE" 
    TCGA-73-4670     TCGA-73-4675     TCGA-73-4676     TCGA-73-4677 
"PSG6 WILD-TYPE" "PSG6 WILD-TYPE" "PSG6 WILD-TYPE"   "PSG6 MUTATED" 
    TCGA-91-6828     TCGA-91-6829     TCGA-91-6831     TCGA-91-6835 
"PSG6 WILD-TYPE" "PSG6 WILD-TYPE" "PSG6 WILD-TYPE" "PSG6 WILD-TYPE" 
    TCGA-91-6836 
"PSG6 WILD-TYPE" 
[1] "hr=" "2.4"
D92V2, continuous
D92V3, binary
[1] "tbl2"
                cls
clus             [,1] [,2]
  PSG6 MUTATED      4    7
  PSG6 WILD-TYPE   89   72
        clus
vv       PSG6 MUTATED PSG6 WILD-TYPE
  FEMALE            4             89
  MALE              7             72
D92V4, continuous
D92V5, multiclass
D92V6, multiclass
    clus
vv   PSG6 MUTATED PSG6 WILD-TYPE
  T1            1             40
  T2            7            101
  T3            2             12
  T4            1              7
D92V7, multiclass
       clus
vv      PSG6 MUTATED PSG6 WILD-TYPE
  N0               8             87
  N1               3             34
  N2+N3            0             35
D92V8, multiclass
    clus
vv   PSG6 MUTATED PSG6 WILD-TYPE
  M0           10            127
  M1            1              8
  MX            0             22
D92V9, multiclass
     clus
vv    PSG6 MUTATED PSG6 WILD-TYPE
  I              6             82
  II             3             30
  III            1             38
  IV             1              8
D92V10, binary
[1] "tbl2"
                cls
clus             [,1] [,2]
  PSG6 MUTATED      1   10
  PSG6 WILD-TYPE   15  146
     clus
vv    PSG6 MUTATED PSG6 WILD-TYPE
  NO             1             15
  YES           10            146
D92V11, continuous
D92V12, continuous
D92V13, multiclass
                                             clus
vv                                            PSG6 MUTATED PSG6 WILD-TYPE
  CURRENT REFORMED SMOKER FOR < OR = 15 YEARS            4             58
  CURRENT REFORMED SMOKER FOR > 15 YEARS                 3             43
  CURRENT SMOKER                                         2             26
  LIFELONG NON-SMOKER                                    1             23
D92V14, continuous

Clustering(93) Variable = EPHA7 MUTATION ANALYSIS
D93V1, survival
                 sevent
clus2              0  1
  EPHA7 MUTATED    8  2
  EPHA7 WILD-TYPE 91 48
  EPHA7 MUTATED EPHA7 WILD-TYPE 
             10             139 
  EPHA7 MUTATED EPHA7 WILD-TYPE 
              2              48 
$`EPHA7 MUTATED`
TCGA-05-4396 TCGA-05-4424 TCGA-05-4427 TCGA-44-2656 TCGA-44-6144 TCGA-49-4505 
        9.96        30.02        26.01        19.10         0.30        14.07 
TCGA-50-5049 TCGA-55-1596 TCGA-55-6642 TCGA-67-3771 
       48.82        45.17        32.61         1.97 

$`EPHA7 WILD-TYPE`
TCGA-05-4249 TCGA-05-4250 TCGA-05-4382 TCGA-05-4384 TCGA-05-4390 TCGA-05-4397 
       38.07         3.98        19.92        14.01        37.02        24.03 
TCGA-05-4398 TCGA-05-4402 TCGA-05-4405 TCGA-05-4415 TCGA-05-4417 TCGA-05-4418 
       47.05         8.02        20.05         2.96        14.93         8.98 
TCGA-05-4420 TCGA-05-4426 TCGA-05-4430 TCGA-05-4432 TCGA-05-4433 TCGA-05-4434 
       29.95        26.01        25.02        25.02        24.00        15.02 
TCGA-05-5420 TCGA-05-5423 TCGA-05-5425 TCGA-05-5429 TCGA-05-5715 TCGA-35-3615 
        1.02         4.96         2.96         0.99         2.04         0.46 
TCGA-35-4122 TCGA-35-4123 TCGA-35-5375 TCGA-38-4625 TCGA-38-4626 TCGA-38-4627 
        7.36         5.95         8.68        47.61        85.32        37.71 
TCGA-38-4628 TCGA-38-4629 TCGA-38-4630 TCGA-38-4631 TCGA-38-4632 TCGA-38-6178 
       49.02        28.37        35.28        11.64        44.61         5.19 
TCGA-44-2655 TCGA-44-2657 TCGA-44-2659 TCGA-44-2661 TCGA-44-2662 TCGA-44-2665 
       18.87        13.15        17.39         3.39        15.78        13.15 
TCGA-44-2666 TCGA-44-2668 TCGA-44-3396 TCGA-44-3398 TCGA-44-3918 TCGA-44-3919 
        3.19         8.09        10.22         8.32         6.44         6.21 
TCGA-44-4112 TCGA-44-5643 TCGA-44-5645 TCGA-44-6145 TCGA-44-6146 TCGA-44-6147 
        4.60         3.48         6.84         3.35         9.93         7.76 
TCGA-44-6148 TCGA-44-6774 TCGA-44-6775 TCGA-44-6776 TCGA-44-6777 TCGA-44-6778 
        3.12         5.42         2.70        63.72        32.45        36.49 
TCGA-44-6779 TCGA-49-4486 TCGA-49-4487 TCGA-49-4488 TCGA-49-4490 TCGA-49-4494 
       16.41        76.21        28.11        28.57        12.66        35.54 
TCGA-49-4501 TCGA-49-4506 TCGA-49-4507 TCGA-49-4510 TCGA-49-4512 TCGA-49-4514 
       46.72        32.84         8.81        29.46        29.75        43.20 
TCGA-49-6742 TCGA-49-6743 TCGA-49-6744 TCGA-49-6745 TCGA-50-5044 TCGA-50-5045 
       15.02        12.13        12.99         4.93        20.48        71.47 
TCGA-50-5051 TCGA-50-5055 TCGA-50-5066 TCGA-50-5068 TCGA-50-5072 TCGA-50-5930 
       14.96        25.81         9.76        49.28         8.05         9.27 
TCGA-50-5931 TCGA-50-5932 TCGA-50-5933 TCGA-50-5935 TCGA-50-5936 TCGA-50-5939 
        8.78        35.87        77.88        21.47         8.45        15.12 
TCGA-50-5941 TCGA-50-5942 TCGA-50-5944 TCGA-50-5946 TCGA-50-6590 TCGA-50-6591 
        9.37         4.44        12.26        11.47        42.31         3.88 
TCGA-50-6592 TCGA-50-6593 TCGA-50-6594 TCGA-50-6595 TCGA-50-6597 TCGA-55-1592 
       25.51        11.05        12.16         6.21        33.37        23.05 
TCGA-55-1594 TCGA-55-1595 TCGA-55-5899 TCGA-55-6543 TCGA-55-6712 TCGA-64-1676 
       38.73        48.62         2.86         0.07         0.79        56.81 
TCGA-64-1677 TCGA-64-1678 TCGA-64-1680 TCGA-64-5774 TCGA-64-5775 TCGA-64-5778 
       20.65        39.09        37.02        83.84         0.10        30.44 
TCGA-64-5779 TCGA-64-5781 TCGA-64-5815 TCGA-67-3770 TCGA-67-3772 TCGA-67-3773 
       16.67        39.52         7.33         0.99         0.59         2.04 
TCGA-67-3774 TCGA-67-6215 TCGA-67-6216 TCGA-67-6217 TCGA-71-6725 TCGA-73-4658 
        0.59         0.89         0.69        13.87         2.01        52.57 
TCGA-73-4659 TCGA-73-4662 TCGA-73-4666 TCGA-73-4668 TCGA-73-4670 TCGA-73-4675 
       23.38        29.95        20.28        15.35         0.46         1.32 
TCGA-73-4676 TCGA-73-4677 TCGA-91-6828 TCGA-91-6829 TCGA-91-6831 TCGA-91-6835 
        4.01         1.25         1.22        41.33         1.28         1.15 
TCGA-91-6836 
        0.36 

  EPHA7 MUTATED EPHA7 WILD-TYPE 
           0.30            0.07 
  EPHA7 MUTATED EPHA7 WILD-TYPE 
          48.82           85.32 
  EPHA7 MUTATED EPHA7 WILD-TYPE 
         22.555          13.150 
[1] "0.3 - 48.8 (22.6)" "0.1 - 85.3 (13.2)"
     TCGA-05-4249      TCGA-05-4250      TCGA-05-4382      TCGA-05-4384 
"EPHA7 WILD-TYPE" "EPHA7 WILD-TYPE" "EPHA7 WILD-TYPE" "EPHA7 WILD-TYPE" 
     TCGA-05-4390      TCGA-05-4396      TCGA-05-4397      TCGA-05-4398 
"EPHA7 WILD-TYPE"   "EPHA7 MUTATED" "EPHA7 WILD-TYPE" "EPHA7 WILD-TYPE" 
     TCGA-05-4402      TCGA-05-4405      TCGA-05-4415      TCGA-05-4417 
"EPHA7 WILD-TYPE" "EPHA7 WILD-TYPE" "EPHA7 WILD-TYPE" "EPHA7 WILD-TYPE" 
     TCGA-05-4418      TCGA-05-4420      TCGA-05-4424      TCGA-05-4426 
"EPHA7 WILD-TYPE" "EPHA7 WILD-TYPE"   "EPHA7 MUTATED" "EPHA7 WILD-TYPE" 
     TCGA-05-4427      TCGA-05-4430      TCGA-05-4432      TCGA-05-4433 
  "EPHA7 MUTATED" "EPHA7 WILD-TYPE" "EPHA7 WILD-TYPE" "EPHA7 WILD-TYPE" 
     TCGA-05-4434      TCGA-05-5420      TCGA-05-5423      TCGA-05-5425 
"EPHA7 WILD-TYPE" "EPHA7 WILD-TYPE" "EPHA7 WILD-TYPE" "EPHA7 WILD-TYPE" 
     TCGA-05-5429      TCGA-05-5715      TCGA-35-3615      TCGA-35-4122 
"EPHA7 WILD-TYPE" "EPHA7 WILD-TYPE" "EPHA7 WILD-TYPE" "EPHA7 WILD-TYPE" 
     TCGA-35-4123      TCGA-35-5375      TCGA-38-4625      TCGA-38-4626 
"EPHA7 WILD-TYPE" "EPHA7 WILD-TYPE" "EPHA7 WILD-TYPE" "EPHA7 WILD-TYPE" 
     TCGA-38-4627      TCGA-38-4628      TCGA-38-4629      TCGA-38-4630 
"EPHA7 WILD-TYPE" "EPHA7 WILD-TYPE" "EPHA7 WILD-TYPE" "EPHA7 WILD-TYPE" 
     TCGA-38-4631      TCGA-38-4632      TCGA-38-6178      TCGA-44-2655 
"EPHA7 WILD-TYPE" "EPHA7 WILD-TYPE" "EPHA7 WILD-TYPE" "EPHA7 WILD-TYPE" 
     TCGA-44-2656      TCGA-44-2657      TCGA-44-2659      TCGA-44-2661 
  "EPHA7 MUTATED" "EPHA7 WILD-TYPE" "EPHA7 WILD-TYPE" "EPHA7 WILD-TYPE" 
     TCGA-44-2662      TCGA-44-2665      TCGA-44-2666      TCGA-44-2668 
"EPHA7 WILD-TYPE" "EPHA7 WILD-TYPE" "EPHA7 WILD-TYPE" "EPHA7 WILD-TYPE" 
     TCGA-44-3396      TCGA-44-3398      TCGA-44-3918      TCGA-44-3919 
"EPHA7 WILD-TYPE" "EPHA7 WILD-TYPE" "EPHA7 WILD-TYPE" "EPHA7 WILD-TYPE" 
     TCGA-44-4112      TCGA-44-5643      TCGA-44-5645      TCGA-44-6144 
"EPHA7 WILD-TYPE" "EPHA7 WILD-TYPE" "EPHA7 WILD-TYPE"   "EPHA7 MUTATED" 
     TCGA-44-6145      TCGA-44-6146      TCGA-44-6147      TCGA-44-6148 
"EPHA7 WILD-TYPE" "EPHA7 WILD-TYPE" "EPHA7 WILD-TYPE" "EPHA7 WILD-TYPE" 
     TCGA-44-6774      TCGA-44-6775      TCGA-44-6776      TCGA-44-6777 
"EPHA7 WILD-TYPE" "EPHA7 WILD-TYPE" "EPHA7 WILD-TYPE" "EPHA7 WILD-TYPE" 
     TCGA-44-6778      TCGA-44-6779      TCGA-49-4486      TCGA-49-4487 
"EPHA7 WILD-TYPE" "EPHA7 WILD-TYPE" "EPHA7 WILD-TYPE" "EPHA7 WILD-TYPE" 
     TCGA-49-4488      TCGA-49-4490      TCGA-49-4494      TCGA-49-4501 
"EPHA7 WILD-TYPE" "EPHA7 WILD-TYPE" "EPHA7 WILD-TYPE" "EPHA7 WILD-TYPE" 
     TCGA-49-4505      TCGA-49-4506      TCGA-49-4507      TCGA-49-4510 
  "EPHA7 MUTATED" "EPHA7 WILD-TYPE" "EPHA7 WILD-TYPE" "EPHA7 WILD-TYPE" 
     TCGA-49-4512      TCGA-49-4514      TCGA-49-6742      TCGA-49-6743 
"EPHA7 WILD-TYPE" "EPHA7 WILD-TYPE" "EPHA7 WILD-TYPE" "EPHA7 WILD-TYPE" 
     TCGA-49-6744      TCGA-49-6745      TCGA-50-5044      TCGA-50-5045 
"EPHA7 WILD-TYPE" "EPHA7 WILD-TYPE" "EPHA7 WILD-TYPE" "EPHA7 WILD-TYPE" 
     TCGA-50-5049      TCGA-50-5051      TCGA-50-5055      TCGA-50-5066 
  "EPHA7 MUTATED" "EPHA7 WILD-TYPE" "EPHA7 WILD-TYPE" "EPHA7 WILD-TYPE" 
     TCGA-50-5068      TCGA-50-5072      TCGA-50-5930      TCGA-50-5931 
"EPHA7 WILD-TYPE" "EPHA7 WILD-TYPE" "EPHA7 WILD-TYPE" "EPHA7 WILD-TYPE" 
     TCGA-50-5932      TCGA-50-5933      TCGA-50-5935      TCGA-50-5936 
"EPHA7 WILD-TYPE" "EPHA7 WILD-TYPE" "EPHA7 WILD-TYPE" "EPHA7 WILD-TYPE" 
     TCGA-50-5939      TCGA-50-5941      TCGA-50-5942      TCGA-50-5944 
"EPHA7 WILD-TYPE" "EPHA7 WILD-TYPE" "EPHA7 WILD-TYPE" "EPHA7 WILD-TYPE" 
     TCGA-50-5946      TCGA-50-6590      TCGA-50-6591      TCGA-50-6592 
"EPHA7 WILD-TYPE" "EPHA7 WILD-TYPE" "EPHA7 WILD-TYPE" "EPHA7 WILD-TYPE" 
     TCGA-50-6593      TCGA-50-6594      TCGA-50-6595      TCGA-50-6597 
"EPHA7 WILD-TYPE" "EPHA7 WILD-TYPE" "EPHA7 WILD-TYPE" "EPHA7 WILD-TYPE" 
     TCGA-55-1592      TCGA-55-1594      TCGA-55-1595      TCGA-55-1596 
"EPHA7 WILD-TYPE" "EPHA7 WILD-TYPE" "EPHA7 WILD-TYPE"   "EPHA7 MUTATED" 
     TCGA-55-5899      TCGA-55-6543      TCGA-55-6642      TCGA-55-6712 
"EPHA7 WILD-TYPE" "EPHA7 WILD-TYPE"   "EPHA7 MUTATED" "EPHA7 WILD-TYPE" 
     TCGA-64-1676      TCGA-64-1677      TCGA-64-1678      TCGA-64-1680 
"EPHA7 WILD-TYPE" "EPHA7 WILD-TYPE" "EPHA7 WILD-TYPE" "EPHA7 WILD-TYPE" 
     TCGA-64-5774      TCGA-64-5775      TCGA-64-5778      TCGA-64-5779 
"EPHA7 WILD-TYPE" "EPHA7 WILD-TYPE" "EPHA7 WILD-TYPE" "EPHA7 WILD-TYPE" 
     TCGA-64-5781      TCGA-64-5815      TCGA-67-3770      TCGA-67-3771 
"EPHA7 WILD-TYPE" "EPHA7 WILD-TYPE" "EPHA7 WILD-TYPE"   "EPHA7 MUTATED" 
     TCGA-67-3772      TCGA-67-3773      TCGA-67-3774      TCGA-67-6215 
"EPHA7 WILD-TYPE" "EPHA7 WILD-TYPE" "EPHA7 WILD-TYPE" "EPHA7 WILD-TYPE" 
     TCGA-67-6216      TCGA-67-6217      TCGA-71-6725      TCGA-73-4658 
"EPHA7 WILD-TYPE" "EPHA7 WILD-TYPE" "EPHA7 WILD-TYPE" "EPHA7 WILD-TYPE" 
     TCGA-73-4659      TCGA-73-4662      TCGA-73-4666      TCGA-73-4668 
"EPHA7 WILD-TYPE" "EPHA7 WILD-TYPE" "EPHA7 WILD-TYPE" "EPHA7 WILD-TYPE" 
     TCGA-73-4670      TCGA-73-4675      TCGA-73-4676      TCGA-73-4677 
"EPHA7 WILD-TYPE" "EPHA7 WILD-TYPE" "EPHA7 WILD-TYPE" "EPHA7 WILD-TYPE" 
     TCGA-91-6828      TCGA-91-6829      TCGA-91-6831      TCGA-91-6835 
"EPHA7 WILD-TYPE" "EPHA7 WILD-TYPE" "EPHA7 WILD-TYPE" "EPHA7 WILD-TYPE" 
     TCGA-91-6836 
"EPHA7 WILD-TYPE" 
     TCGA-05-4249      TCGA-05-4250      TCGA-05-4382      TCGA-05-4384 
"EPHA7 WILD-TYPE" "EPHA7 WILD-TYPE" "EPHA7 WILD-TYPE" "EPHA7 WILD-TYPE" 
     TCGA-05-4390      TCGA-05-4396      TCGA-05-4397      TCGA-05-4398 
"EPHA7 WILD-TYPE"   "EPHA7 MUTATED" "EPHA7 WILD-TYPE" "EPHA7 WILD-TYPE" 
     TCGA-05-4402      TCGA-05-4405      TCGA-05-4415      TCGA-05-4417 
"EPHA7 WILD-TYPE" "EPHA7 WILD-TYPE" "EPHA7 WILD-TYPE" "EPHA7 WILD-TYPE" 
     TCGA-05-4418      TCGA-05-4420      TCGA-05-4424      TCGA-05-4426 
"EPHA7 WILD-TYPE" "EPHA7 WILD-TYPE"   "EPHA7 MUTATED" "EPHA7 WILD-TYPE" 
     TCGA-05-4427      TCGA-05-4430      TCGA-05-4432      TCGA-05-4433 
  "EPHA7 MUTATED" "EPHA7 WILD-TYPE" "EPHA7 WILD-TYPE" "EPHA7 WILD-TYPE" 
     TCGA-05-4434      TCGA-05-5420      TCGA-05-5423      TCGA-05-5425 
"EPHA7 WILD-TYPE" "EPHA7 WILD-TYPE" "EPHA7 WILD-TYPE" "EPHA7 WILD-TYPE" 
     TCGA-05-5429      TCGA-05-5715      TCGA-35-3615      TCGA-35-4122 
"EPHA7 WILD-TYPE" "EPHA7 WILD-TYPE" "EPHA7 WILD-TYPE" "EPHA7 WILD-TYPE" 
     TCGA-35-4123      TCGA-35-5375      TCGA-38-4625      TCGA-38-4626 
"EPHA7 WILD-TYPE" "EPHA7 WILD-TYPE" "EPHA7 WILD-TYPE" "EPHA7 WILD-TYPE" 
     TCGA-38-4627      TCGA-38-4628      TCGA-38-4629      TCGA-38-4630 
"EPHA7 WILD-TYPE" "EPHA7 WILD-TYPE" "EPHA7 WILD-TYPE" "EPHA7 WILD-TYPE" 
     TCGA-38-4631      TCGA-38-4632      TCGA-38-6178      TCGA-44-2655 
"EPHA7 WILD-TYPE" "EPHA7 WILD-TYPE" "EPHA7 WILD-TYPE" "EPHA7 WILD-TYPE" 
     TCGA-44-2656      TCGA-44-2657      TCGA-44-2659      TCGA-44-2661 
  "EPHA7 MUTATED" "EPHA7 WILD-TYPE" "EPHA7 WILD-TYPE" "EPHA7 WILD-TYPE" 
     TCGA-44-2662      TCGA-44-2665      TCGA-44-2666      TCGA-44-2668 
"EPHA7 WILD-TYPE" "EPHA7 WILD-TYPE" "EPHA7 WILD-TYPE" "EPHA7 WILD-TYPE" 
     TCGA-44-3396      TCGA-44-3398      TCGA-44-3918      TCGA-44-3919 
"EPHA7 WILD-TYPE" "EPHA7 WILD-TYPE" "EPHA7 WILD-TYPE" "EPHA7 WILD-TYPE" 
     TCGA-44-4112      TCGA-44-5643      TCGA-44-5645      TCGA-44-6144 
"EPHA7 WILD-TYPE" "EPHA7 WILD-TYPE" "EPHA7 WILD-TYPE"   "EPHA7 MUTATED" 
     TCGA-44-6145      TCGA-44-6146      TCGA-44-6147      TCGA-44-6148 
"EPHA7 WILD-TYPE" "EPHA7 WILD-TYPE" "EPHA7 WILD-TYPE" "EPHA7 WILD-TYPE" 
     TCGA-44-6774      TCGA-44-6775      TCGA-44-6776      TCGA-44-6777 
"EPHA7 WILD-TYPE" "EPHA7 WILD-TYPE" "EPHA7 WILD-TYPE" "EPHA7 WILD-TYPE" 
     TCGA-44-6778      TCGA-44-6779      TCGA-49-4486      TCGA-49-4487 
"EPHA7 WILD-TYPE" "EPHA7 WILD-TYPE" "EPHA7 WILD-TYPE" "EPHA7 WILD-TYPE" 
     TCGA-49-4488      TCGA-49-4490      TCGA-49-4494      TCGA-49-4501 
"EPHA7 WILD-TYPE" "EPHA7 WILD-TYPE" "EPHA7 WILD-TYPE" "EPHA7 WILD-TYPE" 
     TCGA-49-4505      TCGA-49-4506      TCGA-49-4507      TCGA-49-4510 
  "EPHA7 MUTATED" "EPHA7 WILD-TYPE" "EPHA7 WILD-TYPE" "EPHA7 WILD-TYPE" 
     TCGA-49-4512      TCGA-49-4514      TCGA-49-6742      TCGA-49-6743 
"EPHA7 WILD-TYPE" "EPHA7 WILD-TYPE" "EPHA7 WILD-TYPE" "EPHA7 WILD-TYPE" 
     TCGA-49-6744      TCGA-49-6745      TCGA-50-5044      TCGA-50-5045 
"EPHA7 WILD-TYPE" "EPHA7 WILD-TYPE" "EPHA7 WILD-TYPE" "EPHA7 WILD-TYPE" 
     TCGA-50-5049      TCGA-50-5051      TCGA-50-5055      TCGA-50-5066 
  "EPHA7 MUTATED" "EPHA7 WILD-TYPE" "EPHA7 WILD-TYPE" "EPHA7 WILD-TYPE" 
     TCGA-50-5068      TCGA-50-5072      TCGA-50-5930      TCGA-50-5931 
"EPHA7 WILD-TYPE" "EPHA7 WILD-TYPE" "EPHA7 WILD-TYPE" "EPHA7 WILD-TYPE" 
     TCGA-50-5932      TCGA-50-5933      TCGA-50-5935      TCGA-50-5936 
"EPHA7 WILD-TYPE" "EPHA7 WILD-TYPE" "EPHA7 WILD-TYPE" "EPHA7 WILD-TYPE" 
     TCGA-50-5939      TCGA-50-5941      TCGA-50-5942      TCGA-50-5944 
"EPHA7 WILD-TYPE" "EPHA7 WILD-TYPE" "EPHA7 WILD-TYPE" "EPHA7 WILD-TYPE" 
     TCGA-50-5946      TCGA-50-6590      TCGA-50-6591      TCGA-50-6592 
"EPHA7 WILD-TYPE" "EPHA7 WILD-TYPE" "EPHA7 WILD-TYPE" "EPHA7 WILD-TYPE" 
     TCGA-50-6593      TCGA-50-6594      TCGA-50-6595      TCGA-50-6597 
"EPHA7 WILD-TYPE" "EPHA7 WILD-TYPE" "EPHA7 WILD-TYPE" "EPHA7 WILD-TYPE" 
     TCGA-55-1592      TCGA-55-1594      TCGA-55-1595      TCGA-55-1596 
"EPHA7 WILD-TYPE" "EPHA7 WILD-TYPE" "EPHA7 WILD-TYPE"   "EPHA7 MUTATED" 
     TCGA-55-5899      TCGA-55-6543      TCGA-55-6642      TCGA-55-6712 
"EPHA7 WILD-TYPE" "EPHA7 WILD-TYPE"   "EPHA7 MUTATED" "EPHA7 WILD-TYPE" 
     TCGA-64-1676      TCGA-64-1677      TCGA-64-1678      TCGA-64-1680 
"EPHA7 WILD-TYPE" "EPHA7 WILD-TYPE" "EPHA7 WILD-TYPE" "EPHA7 WILD-TYPE" 
     TCGA-64-5774      TCGA-64-5775      TCGA-64-5778      TCGA-64-5779 
"EPHA7 WILD-TYPE" "EPHA7 WILD-TYPE" "EPHA7 WILD-TYPE" "EPHA7 WILD-TYPE" 
     TCGA-64-5781      TCGA-64-5815      TCGA-67-3770      TCGA-67-3771 
"EPHA7 WILD-TYPE" "EPHA7 WILD-TYPE" "EPHA7 WILD-TYPE"   "EPHA7 MUTATED" 
     TCGA-67-3772      TCGA-67-3773      TCGA-67-3774      TCGA-67-6215 
"EPHA7 WILD-TYPE" "EPHA7 WILD-TYPE" "EPHA7 WILD-TYPE" "EPHA7 WILD-TYPE" 
     TCGA-67-6216      TCGA-67-6217      TCGA-71-6725      TCGA-73-4658 
"EPHA7 WILD-TYPE" "EPHA7 WILD-TYPE" "EPHA7 WILD-TYPE" "EPHA7 WILD-TYPE" 
     TCGA-73-4659      TCGA-73-4662      TCGA-73-4666      TCGA-73-4668 
"EPHA7 WILD-TYPE" "EPHA7 WILD-TYPE" "EPHA7 WILD-TYPE" "EPHA7 WILD-TYPE" 
     TCGA-73-4670      TCGA-73-4675      TCGA-73-4676      TCGA-73-4677 
"EPHA7 WILD-TYPE" "EPHA7 WILD-TYPE" "EPHA7 WILD-TYPE" "EPHA7 WILD-TYPE" 
     TCGA-91-6828      TCGA-91-6829      TCGA-91-6831      TCGA-91-6835 
"EPHA7 WILD-TYPE" "EPHA7 WILD-TYPE" "EPHA7 WILD-TYPE" "EPHA7 WILD-TYPE" 
     TCGA-91-6836 
"EPHA7 WILD-TYPE" 
     TCGA-05-4249      TCGA-05-4250      TCGA-05-4382      TCGA-05-4384 
"EPHA7 WILD-TYPE" "EPHA7 WILD-TYPE" "EPHA7 WILD-TYPE" "EPHA7 WILD-TYPE" 
     TCGA-05-4390      TCGA-05-4396      TCGA-05-4397      TCGA-05-4398 
"EPHA7 WILD-TYPE"   "EPHA7 MUTATED" "EPHA7 WILD-TYPE" "EPHA7 WILD-TYPE" 
     TCGA-05-4402      TCGA-05-4405      TCGA-05-4415      TCGA-05-4417 
"EPHA7 WILD-TYPE" "EPHA7 WILD-TYPE" "EPHA7 WILD-TYPE" "EPHA7 WILD-TYPE" 
     TCGA-05-4418      TCGA-05-4420      TCGA-05-4424      TCGA-05-4426 
"EPHA7 WILD-TYPE" "EPHA7 WILD-TYPE"   "EPHA7 MUTATED" "EPHA7 WILD-TYPE" 
     TCGA-05-4427      TCGA-05-4430      TCGA-05-4432      TCGA-05-4433 
  "EPHA7 MUTATED" "EPHA7 WILD-TYPE" "EPHA7 WILD-TYPE" "EPHA7 WILD-TYPE" 
     TCGA-05-4434      TCGA-05-5420      TCGA-05-5423      TCGA-05-5425 
"EPHA7 WILD-TYPE" "EPHA7 WILD-TYPE" "EPHA7 WILD-TYPE" "EPHA7 WILD-TYPE" 
     TCGA-05-5429      TCGA-05-5715      TCGA-35-3615      TCGA-35-4122 
"EPHA7 WILD-TYPE" "EPHA7 WILD-TYPE" "EPHA7 WILD-TYPE" "EPHA7 WILD-TYPE" 
     TCGA-35-4123      TCGA-35-5375      TCGA-38-4625      TCGA-38-4626 
"EPHA7 WILD-TYPE" "EPHA7 WILD-TYPE" "EPHA7 WILD-TYPE" "EPHA7 WILD-TYPE" 
     TCGA-38-4627      TCGA-38-4628      TCGA-38-4629      TCGA-38-4630 
"EPHA7 WILD-TYPE" "EPHA7 WILD-TYPE" "EPHA7 WILD-TYPE" "EPHA7 WILD-TYPE" 
     TCGA-38-4631      TCGA-38-4632      TCGA-38-6178      TCGA-44-2655 
"EPHA7 WILD-TYPE" "EPHA7 WILD-TYPE" "EPHA7 WILD-TYPE" "EPHA7 WILD-TYPE" 
     TCGA-44-2656      TCGA-44-2657      TCGA-44-2659      TCGA-44-2661 
  "EPHA7 MUTATED" "EPHA7 WILD-TYPE" "EPHA7 WILD-TYPE" "EPHA7 WILD-TYPE" 
     TCGA-44-2662      TCGA-44-2665      TCGA-44-2666      TCGA-44-2668 
"EPHA7 WILD-TYPE" "EPHA7 WILD-TYPE" "EPHA7 WILD-TYPE" "EPHA7 WILD-TYPE" 
     TCGA-44-3396      TCGA-44-3398      TCGA-44-3918      TCGA-44-3919 
"EPHA7 WILD-TYPE" "EPHA7 WILD-TYPE" "EPHA7 WILD-TYPE" "EPHA7 WILD-TYPE" 
     TCGA-44-4112      TCGA-44-5643      TCGA-44-5645      TCGA-44-6144 
"EPHA7 WILD-TYPE" "EPHA7 WILD-TYPE" "EPHA7 WILD-TYPE"   "EPHA7 MUTATED" 
     TCGA-44-6145      TCGA-44-6146      TCGA-44-6147      TCGA-44-6148 
"EPHA7 WILD-TYPE" "EPHA7 WILD-TYPE" "EPHA7 WILD-TYPE" "EPHA7 WILD-TYPE" 
     TCGA-44-6774      TCGA-44-6775      TCGA-44-6776      TCGA-44-6777 
"EPHA7 WILD-TYPE" "EPHA7 WILD-TYPE" "EPHA7 WILD-TYPE" "EPHA7 WILD-TYPE" 
     TCGA-44-6778      TCGA-44-6779      TCGA-49-4486      TCGA-49-4487 
"EPHA7 WILD-TYPE" "EPHA7 WILD-TYPE" "EPHA7 WILD-TYPE" "EPHA7 WILD-TYPE" 
     TCGA-49-4488      TCGA-49-4490      TCGA-49-4494      TCGA-49-4501 
"EPHA7 WILD-TYPE" "EPHA7 WILD-TYPE" "EPHA7 WILD-TYPE" "EPHA7 WILD-TYPE" 
     TCGA-49-4505      TCGA-49-4506      TCGA-49-4507      TCGA-49-4510 
  "EPHA7 MUTATED" "EPHA7 WILD-TYPE" "EPHA7 WILD-TYPE" "EPHA7 WILD-TYPE" 
     TCGA-49-4512      TCGA-49-4514      TCGA-49-6742      TCGA-49-6743 
"EPHA7 WILD-TYPE" "EPHA7 WILD-TYPE" "EPHA7 WILD-TYPE" "EPHA7 WILD-TYPE" 
     TCGA-49-6744      TCGA-49-6745      TCGA-50-5044      TCGA-50-5045 
"EPHA7 WILD-TYPE" "EPHA7 WILD-TYPE" "EPHA7 WILD-TYPE" "EPHA7 WILD-TYPE" 
     TCGA-50-5049      TCGA-50-5051      TCGA-50-5055      TCGA-50-5066 
  "EPHA7 MUTATED" "EPHA7 WILD-TYPE" "EPHA7 WILD-TYPE" "EPHA7 WILD-TYPE" 
     TCGA-50-5068      TCGA-50-5072      TCGA-50-5930      TCGA-50-5931 
"EPHA7 WILD-TYPE" "EPHA7 WILD-TYPE" "EPHA7 WILD-TYPE" "EPHA7 WILD-TYPE" 
     TCGA-50-5932      TCGA-50-5933      TCGA-50-5935      TCGA-50-5936 
"EPHA7 WILD-TYPE" "EPHA7 WILD-TYPE" "EPHA7 WILD-TYPE" "EPHA7 WILD-TYPE" 
     TCGA-50-5939      TCGA-50-5941      TCGA-50-5942      TCGA-50-5944 
"EPHA7 WILD-TYPE" "EPHA7 WILD-TYPE" "EPHA7 WILD-TYPE" "EPHA7 WILD-TYPE" 
     TCGA-50-5946      TCGA-50-6590      TCGA-50-6591      TCGA-50-6592 
"EPHA7 WILD-TYPE" "EPHA7 WILD-TYPE" "EPHA7 WILD-TYPE" "EPHA7 WILD-TYPE" 
     TCGA-50-6593      TCGA-50-6594      TCGA-50-6595      TCGA-50-6597 
"EPHA7 WILD-TYPE" "EPHA7 WILD-TYPE" "EPHA7 WILD-TYPE" "EPHA7 WILD-TYPE" 
     TCGA-55-1592      TCGA-55-1594      TCGA-55-1595      TCGA-55-1596 
"EPHA7 WILD-TYPE" "EPHA7 WILD-TYPE" "EPHA7 WILD-TYPE"   "EPHA7 MUTATED" 
     TCGA-55-5899      TCGA-55-6543      TCGA-55-6642      TCGA-55-6712 
"EPHA7 WILD-TYPE" "EPHA7 WILD-TYPE"   "EPHA7 MUTATED" "EPHA7 WILD-TYPE" 
     TCGA-64-1676      TCGA-64-1677      TCGA-64-1678      TCGA-64-1680 
"EPHA7 WILD-TYPE" "EPHA7 WILD-TYPE" "EPHA7 WILD-TYPE" "EPHA7 WILD-TYPE" 
     TCGA-64-5774      TCGA-64-5775      TCGA-64-5778      TCGA-64-5779 
"EPHA7 WILD-TYPE" "EPHA7 WILD-TYPE" "EPHA7 WILD-TYPE" "EPHA7 WILD-TYPE" 
     TCGA-64-5781      TCGA-64-5815      TCGA-67-3770      TCGA-67-3771 
"EPHA7 WILD-TYPE" "EPHA7 WILD-TYPE" "EPHA7 WILD-TYPE"   "EPHA7 MUTATED" 
     TCGA-67-3772      TCGA-67-3773      TCGA-67-3774      TCGA-67-6215 
"EPHA7 WILD-TYPE" "EPHA7 WILD-TYPE" "EPHA7 WILD-TYPE" "EPHA7 WILD-TYPE" 
     TCGA-67-6216      TCGA-67-6217      TCGA-71-6725      TCGA-73-4658 
"EPHA7 WILD-TYPE" "EPHA7 WILD-TYPE" "EPHA7 WILD-TYPE" "EPHA7 WILD-TYPE" 
     TCGA-73-4659      TCGA-73-4662      TCGA-73-4666      TCGA-73-4668 
"EPHA7 WILD-TYPE" "EPHA7 WILD-TYPE" "EPHA7 WILD-TYPE" "EPHA7 WILD-TYPE" 
     TCGA-73-4670      TCGA-73-4675      TCGA-73-4676      TCGA-73-4677 
"EPHA7 WILD-TYPE" "EPHA7 WILD-TYPE" "EPHA7 WILD-TYPE" "EPHA7 WILD-TYPE" 
     TCGA-91-6828      TCGA-91-6829      TCGA-91-6831      TCGA-91-6835 
"EPHA7 WILD-TYPE" "EPHA7 WILD-TYPE" "EPHA7 WILD-TYPE" "EPHA7 WILD-TYPE" 
     TCGA-91-6836 
"EPHA7 WILD-TYPE" 
[1] "hr=" "1.9"
D93V2, continuous
D93V3, binary
[1] "tbl2"
                 cls
clus              [,1] [,2]
  EPHA7 MUTATED      3    8
  EPHA7 WILD-TYPE   90   71
        clus
vv       EPHA7 MUTATED EPHA7 WILD-TYPE
  FEMALE             3              90
  MALE               8              71
D93V4, continuous
D93V5, multiclass
D93V6, multiclass
    clus
vv   EPHA7 MUTATED EPHA7 WILD-TYPE
  T1             2              39
  T2             7             101
  T3             1              13
  T4             1               7
D93V7, multiclass
       clus
vv      EPHA7 MUTATED EPHA7 WILD-TYPE
  N0                7              88
  N1                4              33
  N2+N3             0              35
D93V8, multiclass
    clus
vv   EPHA7 MUTATED EPHA7 WILD-TYPE
  M0            10             127
  M1             0               9
  MX             1              21
D93V9, multiclass
     clus
vv    EPHA7 MUTATED EPHA7 WILD-TYPE
  I               6              82
  II              4              29
  III             1              38
  IV              0               9
D93V10, binary
[1] "tbl2"
                 cls
clus              [,1] [,2]
  EPHA7 MUTATED      1   10
  EPHA7 WILD-TYPE   15  146
     clus
vv    EPHA7 MUTATED EPHA7 WILD-TYPE
  NO              1              15
  YES            10             146
D93V11, continuous
D93V12, continuous
D93V13, multiclass
                                             clus
vv                                            EPHA7 MUTATED EPHA7 WILD-TYPE
  CURRENT REFORMED SMOKER FOR < OR = 15 YEARS             6              56
  CURRENT REFORMED SMOKER FOR > 15 YEARS                  1              45
  CURRENT SMOKER                                          3              25
  LIFELONG NON-SMOKER                                     0              24
D93V14, continuous

Clustering(94) Variable = KRTAP11-1 MUTATION ANALYSIS
D94V1, survival
                     sevent
clus2                  0  1
  KRTAP11-1 MUTATED    4  1
  KRTAP11-1 WILD-TYPE 95 49
  KRTAP11-1 MUTATED KRTAP11-1 WILD-TYPE 
                  5                 144 
  KRTAP11-1 MUTATED KRTAP11-1 WILD-TYPE 
                  1                  49 
$`KRTAP11-1 MUTATED`
TCGA-05-4249 TCGA-05-4398 TCGA-05-4405 TCGA-44-6776 TCGA-50-6593 
       38.07        47.05        20.05        63.72        11.05 

$`KRTAP11-1 WILD-TYPE`
TCGA-05-4250 TCGA-05-4382 TCGA-05-4384 TCGA-05-4390 TCGA-05-4396 TCGA-05-4397 
        3.98        19.92        14.01        37.02         9.96        24.03 
TCGA-05-4402 TCGA-05-4415 TCGA-05-4417 TCGA-05-4418 TCGA-05-4420 TCGA-05-4424 
        8.02         2.96        14.93         8.98        29.95        30.02 
TCGA-05-4426 TCGA-05-4427 TCGA-05-4430 TCGA-05-4432 TCGA-05-4433 TCGA-05-4434 
       26.01        26.01        25.02        25.02        24.00        15.02 
TCGA-05-5420 TCGA-05-5423 TCGA-05-5425 TCGA-05-5429 TCGA-05-5715 TCGA-35-3615 
        1.02         4.96         2.96         0.99         2.04         0.46 
TCGA-35-4122 TCGA-35-4123 TCGA-35-5375 TCGA-38-4625 TCGA-38-4626 TCGA-38-4627 
        7.36         5.95         8.68        47.61        85.32        37.71 
TCGA-38-4628 TCGA-38-4629 TCGA-38-4630 TCGA-38-4631 TCGA-38-4632 TCGA-38-6178 
       49.02        28.37        35.28        11.64        44.61         5.19 
TCGA-44-2655 TCGA-44-2656 TCGA-44-2657 TCGA-44-2659 TCGA-44-2661 TCGA-44-2662 
       18.87        19.10        13.15        17.39         3.39        15.78 
TCGA-44-2665 TCGA-44-2666 TCGA-44-2668 TCGA-44-3396 TCGA-44-3398 TCGA-44-3918 
       13.15         3.19         8.09        10.22         8.32         6.44 
TCGA-44-3919 TCGA-44-4112 TCGA-44-5643 TCGA-44-5645 TCGA-44-6144 TCGA-44-6145 
        6.21         4.60         3.48         6.84         0.30         3.35 
TCGA-44-6146 TCGA-44-6147 TCGA-44-6148 TCGA-44-6774 TCGA-44-6775 TCGA-44-6777 
        9.93         7.76         3.12         5.42         2.70        32.45 
TCGA-44-6778 TCGA-44-6779 TCGA-49-4486 TCGA-49-4487 TCGA-49-4488 TCGA-49-4490 
       36.49        16.41        76.21        28.11        28.57        12.66 
TCGA-49-4494 TCGA-49-4501 TCGA-49-4505 TCGA-49-4506 TCGA-49-4507 TCGA-49-4510 
       35.54        46.72        14.07        32.84         8.81        29.46 
TCGA-49-4512 TCGA-49-4514 TCGA-49-6742 TCGA-49-6743 TCGA-49-6744 TCGA-49-6745 
       29.75        43.20        15.02        12.13        12.99         4.93 
TCGA-50-5044 TCGA-50-5045 TCGA-50-5049 TCGA-50-5051 TCGA-50-5055 TCGA-50-5066 
       20.48        71.47        48.82        14.96        25.81         9.76 
TCGA-50-5068 TCGA-50-5072 TCGA-50-5930 TCGA-50-5931 TCGA-50-5932 TCGA-50-5933 
       49.28         8.05         9.27         8.78        35.87        77.88 
TCGA-50-5935 TCGA-50-5936 TCGA-50-5939 TCGA-50-5941 TCGA-50-5942 TCGA-50-5944 
       21.47         8.45        15.12         9.37         4.44        12.26 
TCGA-50-5946 TCGA-50-6590 TCGA-50-6591 TCGA-50-6592 TCGA-50-6594 TCGA-50-6595 
       11.47        42.31         3.88        25.51        12.16         6.21 
TCGA-50-6597 TCGA-55-1592 TCGA-55-1594 TCGA-55-1595 TCGA-55-1596 TCGA-55-5899 
       33.37        23.05        38.73        48.62        45.17         2.86 
TCGA-55-6543 TCGA-55-6642 TCGA-55-6712 TCGA-64-1676 TCGA-64-1677 TCGA-64-1678 
        0.07        32.61         0.79        56.81        20.65        39.09 
TCGA-64-1680 TCGA-64-5774 TCGA-64-5775 TCGA-64-5778 TCGA-64-5779 TCGA-64-5781 
       37.02        83.84         0.10        30.44        16.67        39.52 
TCGA-64-5815 TCGA-67-3770 TCGA-67-3771 TCGA-67-3772 TCGA-67-3773 TCGA-67-3774 
        7.33         0.99         1.97         0.59         2.04         0.59 
TCGA-67-6215 TCGA-67-6216 TCGA-67-6217 TCGA-71-6725 TCGA-73-4658 TCGA-73-4659 
        0.89         0.69        13.87         2.01        52.57        23.38 
TCGA-73-4662 TCGA-73-4666 TCGA-73-4668 TCGA-73-4670 TCGA-73-4675 TCGA-73-4676 
       29.95        20.28        15.35         0.46         1.32         4.01 
TCGA-73-4677 TCGA-91-6828 TCGA-91-6829 TCGA-91-6831 TCGA-91-6835 TCGA-91-6836 
        1.25         1.22        41.33         1.28         1.15         0.36 

  KRTAP11-1 MUTATED KRTAP11-1 WILD-TYPE 
              11.05                0.07 
  KRTAP11-1 MUTATED KRTAP11-1 WILD-TYPE 
              63.72               85.32 
  KRTAP11-1 MUTATED KRTAP11-1 WILD-TYPE 
              38.07               13.15 
[1] "11.1 - 63.7 (38.1)" "0.1 - 85.3 (13.2)" 
         TCGA-05-4249          TCGA-05-4250          TCGA-05-4382 
  "KRTAP11-1 MUTATED" "KRTAP11-1 WILD-TYPE" "KRTAP11-1 WILD-TYPE" 
         TCGA-05-4384          TCGA-05-4390          TCGA-05-4396 
"KRTAP11-1 WILD-TYPE" "KRTAP11-1 WILD-TYPE" "KRTAP11-1 WILD-TYPE" 
         TCGA-05-4397          TCGA-05-4398          TCGA-05-4402 
"KRTAP11-1 WILD-TYPE"   "KRTAP11-1 MUTATED" "KRTAP11-1 WILD-TYPE" 
         TCGA-05-4405          TCGA-05-4415          TCGA-05-4417 
  "KRTAP11-1 MUTATED" "KRTAP11-1 WILD-TYPE" "KRTAP11-1 WILD-TYPE" 
         TCGA-05-4418          TCGA-05-4420          TCGA-05-4424 
"KRTAP11-1 WILD-TYPE" "KRTAP11-1 WILD-TYPE" "KRTAP11-1 WILD-TYPE" 
         TCGA-05-4426          TCGA-05-4427          TCGA-05-4430 
"KRTAP11-1 WILD-TYPE" "KRTAP11-1 WILD-TYPE" "KRTAP11-1 WILD-TYPE" 
         TCGA-05-4432          TCGA-05-4433          TCGA-05-4434 
"KRTAP11-1 WILD-TYPE" "KRTAP11-1 WILD-TYPE" "KRTAP11-1 WILD-TYPE" 
         TCGA-05-5420          TCGA-05-5423          TCGA-05-5425 
"KRTAP11-1 WILD-TYPE" "KRTAP11-1 WILD-TYPE" "KRTAP11-1 WILD-TYPE" 
         TCGA-05-5429          TCGA-05-5715          TCGA-35-3615 
"KRTAP11-1 WILD-TYPE" "KRTAP11-1 WILD-TYPE" "KRTAP11-1 WILD-TYPE" 
         TCGA-35-4122          TCGA-35-4123          TCGA-35-5375 
"KRTAP11-1 WILD-TYPE" "KRTAP11-1 WILD-TYPE" "KRTAP11-1 WILD-TYPE" 
         TCGA-38-4625          TCGA-38-4626          TCGA-38-4627 
"KRTAP11-1 WILD-TYPE" "KRTAP11-1 WILD-TYPE" "KRTAP11-1 WILD-TYPE" 
         TCGA-38-4628          TCGA-38-4629          TCGA-38-4630 
"KRTAP11-1 WILD-TYPE" "KRTAP11-1 WILD-TYPE" "KRTAP11-1 WILD-TYPE" 
         TCGA-38-4631          TCGA-38-4632          TCGA-38-6178 
"KRTAP11-1 WILD-TYPE" "KRTAP11-1 WILD-TYPE" "KRTAP11-1 WILD-TYPE" 
         TCGA-44-2655          TCGA-44-2656          TCGA-44-2657 
"KRTAP11-1 WILD-TYPE" "KRTAP11-1 WILD-TYPE" "KRTAP11-1 WILD-TYPE" 
         TCGA-44-2659          TCGA-44-2661          TCGA-44-2662 
"KRTAP11-1 WILD-TYPE" "KRTAP11-1 WILD-TYPE" "KRTAP11-1 WILD-TYPE" 
         TCGA-44-2665          TCGA-44-2666          TCGA-44-2668 
"KRTAP11-1 WILD-TYPE" "KRTAP11-1 WILD-TYPE" "KRTAP11-1 WILD-TYPE" 
         TCGA-44-3396          TCGA-44-3398          TCGA-44-3918 
"KRTAP11-1 WILD-TYPE" "KRTAP11-1 WILD-TYPE" "KRTAP11-1 WILD-TYPE" 
         TCGA-44-3919          TCGA-44-4112          TCGA-44-5643 
"KRTAP11-1 WILD-TYPE" "KRTAP11-1 WILD-TYPE" "KRTAP11-1 WILD-TYPE" 
         TCGA-44-5645          TCGA-44-6144          TCGA-44-6145 
"KRTAP11-1 WILD-TYPE" "KRTAP11-1 WILD-TYPE" "KRTAP11-1 WILD-TYPE" 
         TCGA-44-6146          TCGA-44-6147          TCGA-44-6148 
"KRTAP11-1 WILD-TYPE" "KRTAP11-1 WILD-TYPE" "KRTAP11-1 WILD-TYPE" 
         TCGA-44-6774          TCGA-44-6775          TCGA-44-6776 
"KRTAP11-1 WILD-TYPE" "KRTAP11-1 WILD-TYPE"   "KRTAP11-1 MUTATED" 
         TCGA-44-6777          TCGA-44-6778          TCGA-44-6779 
"KRTAP11-1 WILD-TYPE" "KRTAP11-1 WILD-TYPE" "KRTAP11-1 WILD-TYPE" 
         TCGA-49-4486          TCGA-49-4487          TCGA-49-4488 
"KRTAP11-1 WILD-TYPE" "KRTAP11-1 WILD-TYPE" "KRTAP11-1 WILD-TYPE" 
         TCGA-49-4490          TCGA-49-4494          TCGA-49-4501 
"KRTAP11-1 WILD-TYPE" "KRTAP11-1 WILD-TYPE" "KRTAP11-1 WILD-TYPE" 
         TCGA-49-4505          TCGA-49-4506          TCGA-49-4507 
"KRTAP11-1 WILD-TYPE" "KRTAP11-1 WILD-TYPE" "KRTAP11-1 WILD-TYPE" 
         TCGA-49-4510          TCGA-49-4512          TCGA-49-4514 
"KRTAP11-1 WILD-TYPE" "KRTAP11-1 WILD-TYPE" "KRTAP11-1 WILD-TYPE" 
         TCGA-49-6742          TCGA-49-6743          TCGA-49-6744 
"KRTAP11-1 WILD-TYPE" "KRTAP11-1 WILD-TYPE" "KRTAP11-1 WILD-TYPE" 
         TCGA-49-6745          TCGA-50-5044          TCGA-50-5045 
"KRTAP11-1 WILD-TYPE" "KRTAP11-1 WILD-TYPE" "KRTAP11-1 WILD-TYPE" 
         TCGA-50-5049          TCGA-50-5051          TCGA-50-5055 
"KRTAP11-1 WILD-TYPE" "KRTAP11-1 WILD-TYPE" "KRTAP11-1 WILD-TYPE" 
         TCGA-50-5066          TCGA-50-5068          TCGA-50-5072 
"KRTAP11-1 WILD-TYPE" "KRTAP11-1 WILD-TYPE" "KRTAP11-1 WILD-TYPE" 
         TCGA-50-5930          TCGA-50-5931          TCGA-50-5932 
"KRTAP11-1 WILD-TYPE" "KRTAP11-1 WILD-TYPE" "KRTAP11-1 WILD-TYPE" 
         TCGA-50-5933          TCGA-50-5935          TCGA-50-5936 
"KRTAP11-1 WILD-TYPE" "KRTAP11-1 WILD-TYPE" "KRTAP11-1 WILD-TYPE" 
         TCGA-50-5939          TCGA-50-5941          TCGA-50-5942 
"KRTAP11-1 WILD-TYPE" "KRTAP11-1 WILD-TYPE" "KRTAP11-1 WILD-TYPE" 
         TCGA-50-5944          TCGA-50-5946          TCGA-50-6590 
"KRTAP11-1 WILD-TYPE" "KRTAP11-1 WILD-TYPE" "KRTAP11-1 WILD-TYPE" 
         TCGA-50-6591          TCGA-50-6592          TCGA-50-6593 
"KRTAP11-1 WILD-TYPE" "KRTAP11-1 WILD-TYPE"   "KRTAP11-1 MUTATED" 
         TCGA-50-6594          TCGA-50-6595          TCGA-50-6597 
"KRTAP11-1 WILD-TYPE" "KRTAP11-1 WILD-TYPE" "KRTAP11-1 WILD-TYPE" 
         TCGA-55-1592          TCGA-55-1594          TCGA-55-1595 
"KRTAP11-1 WILD-TYPE" "KRTAP11-1 WILD-TYPE" "KRTAP11-1 WILD-TYPE" 
         TCGA-55-1596          TCGA-55-5899          TCGA-55-6543 
"KRTAP11-1 WILD-TYPE" "KRTAP11-1 WILD-TYPE" "KRTAP11-1 WILD-TYPE" 
         TCGA-55-6642          TCGA-55-6712          TCGA-64-1676 
"KRTAP11-1 WILD-TYPE" "KRTAP11-1 WILD-TYPE" "KRTAP11-1 WILD-TYPE" 
         TCGA-64-1677          TCGA-64-1678          TCGA-64-1680 
"KRTAP11-1 WILD-TYPE" "KRTAP11-1 WILD-TYPE" "KRTAP11-1 WILD-TYPE" 
         TCGA-64-5774          TCGA-64-5775          TCGA-64-5778 
"KRTAP11-1 WILD-TYPE" "KRTAP11-1 WILD-TYPE" "KRTAP11-1 WILD-TYPE" 
         TCGA-64-5779          TCGA-64-5781          TCGA-64-5815 
"KRTAP11-1 WILD-TYPE" "KRTAP11-1 WILD-TYPE" "KRTAP11-1 WILD-TYPE" 
         TCGA-67-3770          TCGA-67-3771          TCGA-67-3772 
"KRTAP11-1 WILD-TYPE" "KRTAP11-1 WILD-TYPE" "KRTAP11-1 WILD-TYPE" 
         TCGA-67-3773          TCGA-67-3774          TCGA-67-6215 
"KRTAP11-1 WILD-TYPE" "KRTAP11-1 WILD-TYPE" "KRTAP11-1 WILD-TYPE" 
         TCGA-67-6216          TCGA-67-6217          TCGA-71-6725 
"KRTAP11-1 WILD-TYPE" "KRTAP11-1 WILD-TYPE" "KRTAP11-1 WILD-TYPE" 
         TCGA-73-4658          TCGA-73-4659          TCGA-73-4662 
"KRTAP11-1 WILD-TYPE" "KRTAP11-1 WILD-TYPE" "KRTAP11-1 WILD-TYPE" 
         TCGA-73-4666          TCGA-73-4668          TCGA-73-4670 
"KRTAP11-1 WILD-TYPE" "KRTAP11-1 WILD-TYPE" "KRTAP11-1 WILD-TYPE" 
         TCGA-73-4675          TCGA-73-4676          TCGA-73-4677 
"KRTAP11-1 WILD-TYPE" "KRTAP11-1 WILD-TYPE" "KRTAP11-1 WILD-TYPE" 
         TCGA-91-6828          TCGA-91-6829          TCGA-91-6831 
"KRTAP11-1 WILD-TYPE" "KRTAP11-1 WILD-TYPE" "KRTAP11-1 WILD-TYPE" 
         TCGA-91-6835          TCGA-91-6836 
"KRTAP11-1 WILD-TYPE" "KRTAP11-1 WILD-TYPE" 
         TCGA-05-4249          TCGA-05-4250          TCGA-05-4382 
  "KRTAP11-1 MUTATED" "KRTAP11-1 WILD-TYPE" "KRTAP11-1 WILD-TYPE" 
         TCGA-05-4384          TCGA-05-4390          TCGA-05-4396 
"KRTAP11-1 WILD-TYPE" "KRTAP11-1 WILD-TYPE" "KRTAP11-1 WILD-TYPE" 
         TCGA-05-4397          TCGA-05-4398          TCGA-05-4402 
"KRTAP11-1 WILD-TYPE"   "KRTAP11-1 MUTATED" "KRTAP11-1 WILD-TYPE" 
         TCGA-05-4405          TCGA-05-4415          TCGA-05-4417 
  "KRTAP11-1 MUTATED" "KRTAP11-1 WILD-TYPE" "KRTAP11-1 WILD-TYPE" 
         TCGA-05-4418          TCGA-05-4420          TCGA-05-4424 
"KRTAP11-1 WILD-TYPE" "KRTAP11-1 WILD-TYPE" "KRTAP11-1 WILD-TYPE" 
         TCGA-05-4426          TCGA-05-4427          TCGA-05-4430 
"KRTAP11-1 WILD-TYPE" "KRTAP11-1 WILD-TYPE" "KRTAP11-1 WILD-TYPE" 
         TCGA-05-4432          TCGA-05-4433          TCGA-05-4434 
"KRTAP11-1 WILD-TYPE" "KRTAP11-1 WILD-TYPE" "KRTAP11-1 WILD-TYPE" 
         TCGA-05-5420          TCGA-05-5423          TCGA-05-5425 
"KRTAP11-1 WILD-TYPE" "KRTAP11-1 WILD-TYPE" "KRTAP11-1 WILD-TYPE" 
         TCGA-05-5429          TCGA-05-5715          TCGA-35-3615 
"KRTAP11-1 WILD-TYPE" "KRTAP11-1 WILD-TYPE" "KRTAP11-1 WILD-TYPE" 
         TCGA-35-4122          TCGA-35-4123          TCGA-35-5375 
"KRTAP11-1 WILD-TYPE" "KRTAP11-1 WILD-TYPE" "KRTAP11-1 WILD-TYPE" 
         TCGA-38-4625          TCGA-38-4626          TCGA-38-4627 
"KRTAP11-1 WILD-TYPE" "KRTAP11-1 WILD-TYPE" "KRTAP11-1 WILD-TYPE" 
         TCGA-38-4628          TCGA-38-4629          TCGA-38-4630 
"KRTAP11-1 WILD-TYPE" "KRTAP11-1 WILD-TYPE" "KRTAP11-1 WILD-TYPE" 
         TCGA-38-4631          TCGA-38-4632          TCGA-38-6178 
"KRTAP11-1 WILD-TYPE" "KRTAP11-1 WILD-TYPE" "KRTAP11-1 WILD-TYPE" 
         TCGA-44-2655          TCGA-44-2656          TCGA-44-2657 
"KRTAP11-1 WILD-TYPE" "KRTAP11-1 WILD-TYPE" "KRTAP11-1 WILD-TYPE" 
         TCGA-44-2659          TCGA-44-2661          TCGA-44-2662 
"KRTAP11-1 WILD-TYPE" "KRTAP11-1 WILD-TYPE" "KRTAP11-1 WILD-TYPE" 
         TCGA-44-2665          TCGA-44-2666          TCGA-44-2668 
"KRTAP11-1 WILD-TYPE" "KRTAP11-1 WILD-TYPE" "KRTAP11-1 WILD-TYPE" 
         TCGA-44-3396          TCGA-44-3398          TCGA-44-3918 
"KRTAP11-1 WILD-TYPE" "KRTAP11-1 WILD-TYPE" "KRTAP11-1 WILD-TYPE" 
         TCGA-44-3919          TCGA-44-4112          TCGA-44-5643 
"KRTAP11-1 WILD-TYPE" "KRTAP11-1 WILD-TYPE" "KRTAP11-1 WILD-TYPE" 
         TCGA-44-5645          TCGA-44-6144          TCGA-44-6145 
"KRTAP11-1 WILD-TYPE" "KRTAP11-1 WILD-TYPE" "KRTAP11-1 WILD-TYPE" 
         TCGA-44-6146          TCGA-44-6147          TCGA-44-6148 
"KRTAP11-1 WILD-TYPE" "KRTAP11-1 WILD-TYPE" "KRTAP11-1 WILD-TYPE" 
         TCGA-44-6774          TCGA-44-6775          TCGA-44-6776 
"KRTAP11-1 WILD-TYPE" "KRTAP11-1 WILD-TYPE"   "KRTAP11-1 MUTATED" 
         TCGA-44-6777          TCGA-44-6778          TCGA-44-6779 
"KRTAP11-1 WILD-TYPE" "KRTAP11-1 WILD-TYPE" "KRTAP11-1 WILD-TYPE" 
         TCGA-49-4486          TCGA-49-4487          TCGA-49-4488 
"KRTAP11-1 WILD-TYPE" "KRTAP11-1 WILD-TYPE" "KRTAP11-1 WILD-TYPE" 
         TCGA-49-4490          TCGA-49-4494          TCGA-49-4501 
"KRTAP11-1 WILD-TYPE" "KRTAP11-1 WILD-TYPE" "KRTAP11-1 WILD-TYPE" 
         TCGA-49-4505          TCGA-49-4506          TCGA-49-4507 
"KRTAP11-1 WILD-TYPE" "KRTAP11-1 WILD-TYPE" "KRTAP11-1 WILD-TYPE" 
         TCGA-49-4510          TCGA-49-4512          TCGA-49-4514 
"KRTAP11-1 WILD-TYPE" "KRTAP11-1 WILD-TYPE" "KRTAP11-1 WILD-TYPE" 
         TCGA-49-6742          TCGA-49-6743          TCGA-49-6744 
"KRTAP11-1 WILD-TYPE" "KRTAP11-1 WILD-TYPE" "KRTAP11-1 WILD-TYPE" 
         TCGA-49-6745          TCGA-50-5044          TCGA-50-5045 
"KRTAP11-1 WILD-TYPE" "KRTAP11-1 WILD-TYPE" "KRTAP11-1 WILD-TYPE" 
         TCGA-50-5049          TCGA-50-5051          TCGA-50-5055 
"KRTAP11-1 WILD-TYPE" "KRTAP11-1 WILD-TYPE" "KRTAP11-1 WILD-TYPE" 
         TCGA-50-5066          TCGA-50-5068          TCGA-50-5072 
"KRTAP11-1 WILD-TYPE" "KRTAP11-1 WILD-TYPE" "KRTAP11-1 WILD-TYPE" 
         TCGA-50-5930          TCGA-50-5931          TCGA-50-5932 
"KRTAP11-1 WILD-TYPE" "KRTAP11-1 WILD-TYPE" "KRTAP11-1 WILD-TYPE" 
         TCGA-50-5933          TCGA-50-5935          TCGA-50-5936 
"KRTAP11-1 WILD-TYPE" "KRTAP11-1 WILD-TYPE" "KRTAP11-1 WILD-TYPE" 
         TCGA-50-5939          TCGA-50-5941          TCGA-50-5942 
"KRTAP11-1 WILD-TYPE" "KRTAP11-1 WILD-TYPE" "KRTAP11-1 WILD-TYPE" 
         TCGA-50-5944          TCGA-50-5946          TCGA-50-6590 
"KRTAP11-1 WILD-TYPE" "KRTAP11-1 WILD-TYPE" "KRTAP11-1 WILD-TYPE" 
         TCGA-50-6591          TCGA-50-6592          TCGA-50-6593 
"KRTAP11-1 WILD-TYPE" "KRTAP11-1 WILD-TYPE"   "KRTAP11-1 MUTATED" 
         TCGA-50-6594          TCGA-50-6595          TCGA-50-6597 
"KRTAP11-1 WILD-TYPE" "KRTAP11-1 WILD-TYPE" "KRTAP11-1 WILD-TYPE" 
         TCGA-55-1592          TCGA-55-1594          TCGA-55-1595 
"KRTAP11-1 WILD-TYPE" "KRTAP11-1 WILD-TYPE" "KRTAP11-1 WILD-TYPE" 
         TCGA-55-1596          TCGA-55-5899          TCGA-55-6543 
"KRTAP11-1 WILD-TYPE" "KRTAP11-1 WILD-TYPE" "KRTAP11-1 WILD-TYPE" 
         TCGA-55-6642          TCGA-55-6712          TCGA-64-1676 
"KRTAP11-1 WILD-TYPE" "KRTAP11-1 WILD-TYPE" "KRTAP11-1 WILD-TYPE" 
         TCGA-64-1677          TCGA-64-1678          TCGA-64-1680 
"KRTAP11-1 WILD-TYPE" "KRTAP11-1 WILD-TYPE" "KRTAP11-1 WILD-TYPE" 
         TCGA-64-5774          TCGA-64-5775          TCGA-64-5778 
"KRTAP11-1 WILD-TYPE" "KRTAP11-1 WILD-TYPE" "KRTAP11-1 WILD-TYPE" 
         TCGA-64-5779          TCGA-64-5781          TCGA-64-5815 
"KRTAP11-1 WILD-TYPE" "KRTAP11-1 WILD-TYPE" "KRTAP11-1 WILD-TYPE" 
         TCGA-67-3770          TCGA-67-3771          TCGA-67-3772 
"KRTAP11-1 WILD-TYPE" "KRTAP11-1 WILD-TYPE" "KRTAP11-1 WILD-TYPE" 
         TCGA-67-3773          TCGA-67-3774          TCGA-67-6215 
"KRTAP11-1 WILD-TYPE" "KRTAP11-1 WILD-TYPE" "KRTAP11-1 WILD-TYPE" 
         TCGA-67-6216          TCGA-67-6217          TCGA-71-6725 
"KRTAP11-1 WILD-TYPE" "KRTAP11-1 WILD-TYPE" "KRTAP11-1 WILD-TYPE" 
         TCGA-73-4658          TCGA-73-4659          TCGA-73-4662 
"KRTAP11-1 WILD-TYPE" "KRTAP11-1 WILD-TYPE" "KRTAP11-1 WILD-TYPE" 
         TCGA-73-4666          TCGA-73-4668          TCGA-73-4670 
"KRTAP11-1 WILD-TYPE" "KRTAP11-1 WILD-TYPE" "KRTAP11-1 WILD-TYPE" 
         TCGA-73-4675          TCGA-73-4676          TCGA-73-4677 
"KRTAP11-1 WILD-TYPE" "KRTAP11-1 WILD-TYPE" "KRTAP11-1 WILD-TYPE" 
         TCGA-91-6828          TCGA-91-6829          TCGA-91-6831 
"KRTAP11-1 WILD-TYPE" "KRTAP11-1 WILD-TYPE" "KRTAP11-1 WILD-TYPE" 
         TCGA-91-6835          TCGA-91-6836 
"KRTAP11-1 WILD-TYPE" "KRTAP11-1 WILD-TYPE" 
         TCGA-05-4249          TCGA-05-4250          TCGA-05-4382 
  "KRTAP11-1 MUTATED" "KRTAP11-1 WILD-TYPE" "KRTAP11-1 WILD-TYPE" 
         TCGA-05-4384          TCGA-05-4390          TCGA-05-4396 
"KRTAP11-1 WILD-TYPE" "KRTAP11-1 WILD-TYPE" "KRTAP11-1 WILD-TYPE" 
         TCGA-05-4397          TCGA-05-4398          TCGA-05-4402 
"KRTAP11-1 WILD-TYPE"   "KRTAP11-1 MUTATED" "KRTAP11-1 WILD-TYPE" 
         TCGA-05-4405          TCGA-05-4415          TCGA-05-4417 
  "KRTAP11-1 MUTATED" "KRTAP11-1 WILD-TYPE" "KRTAP11-1 WILD-TYPE" 
         TCGA-05-4418          TCGA-05-4420          TCGA-05-4424 
"KRTAP11-1 WILD-TYPE" "KRTAP11-1 WILD-TYPE" "KRTAP11-1 WILD-TYPE" 
         TCGA-05-4426          TCGA-05-4427          TCGA-05-4430 
"KRTAP11-1 WILD-TYPE" "KRTAP11-1 WILD-TYPE" "KRTAP11-1 WILD-TYPE" 
         TCGA-05-4432          TCGA-05-4433          TCGA-05-4434 
"KRTAP11-1 WILD-TYPE" "KRTAP11-1 WILD-TYPE" "KRTAP11-1 WILD-TYPE" 
         TCGA-05-5420          TCGA-05-5423          TCGA-05-5425 
"KRTAP11-1 WILD-TYPE" "KRTAP11-1 WILD-TYPE" "KRTAP11-1 WILD-TYPE" 
         TCGA-05-5429          TCGA-05-5715          TCGA-35-3615 
"KRTAP11-1 WILD-TYPE" "KRTAP11-1 WILD-TYPE" "KRTAP11-1 WILD-TYPE" 
         TCGA-35-4122          TCGA-35-4123          TCGA-35-5375 
"KRTAP11-1 WILD-TYPE" "KRTAP11-1 WILD-TYPE" "KRTAP11-1 WILD-TYPE" 
         TCGA-38-4625          TCGA-38-4626          TCGA-38-4627 
"KRTAP11-1 WILD-TYPE" "KRTAP11-1 WILD-TYPE" "KRTAP11-1 WILD-TYPE" 
         TCGA-38-4628          TCGA-38-4629          TCGA-38-4630 
"KRTAP11-1 WILD-TYPE" "KRTAP11-1 WILD-TYPE" "KRTAP11-1 WILD-TYPE" 
         TCGA-38-4631          TCGA-38-4632          TCGA-38-6178 
"KRTAP11-1 WILD-TYPE" "KRTAP11-1 WILD-TYPE" "KRTAP11-1 WILD-TYPE" 
         TCGA-44-2655          TCGA-44-2656          TCGA-44-2657 
"KRTAP11-1 WILD-TYPE" "KRTAP11-1 WILD-TYPE" "KRTAP11-1 WILD-TYPE" 
         TCGA-44-2659          TCGA-44-2661          TCGA-44-2662 
"KRTAP11-1 WILD-TYPE" "KRTAP11-1 WILD-TYPE" "KRTAP11-1 WILD-TYPE" 
         TCGA-44-2665          TCGA-44-2666          TCGA-44-2668 
"KRTAP11-1 WILD-TYPE" "KRTAP11-1 WILD-TYPE" "KRTAP11-1 WILD-TYPE" 
         TCGA-44-3396          TCGA-44-3398          TCGA-44-3918 
"KRTAP11-1 WILD-TYPE" "KRTAP11-1 WILD-TYPE" "KRTAP11-1 WILD-TYPE" 
         TCGA-44-3919          TCGA-44-4112          TCGA-44-5643 
"KRTAP11-1 WILD-TYPE" "KRTAP11-1 WILD-TYPE" "KRTAP11-1 WILD-TYPE" 
         TCGA-44-5645          TCGA-44-6144          TCGA-44-6145 
"KRTAP11-1 WILD-TYPE" "KRTAP11-1 WILD-TYPE" "KRTAP11-1 WILD-TYPE" 
         TCGA-44-6146          TCGA-44-6147          TCGA-44-6148 
"KRTAP11-1 WILD-TYPE" "KRTAP11-1 WILD-TYPE" "KRTAP11-1 WILD-TYPE" 
         TCGA-44-6774          TCGA-44-6775          TCGA-44-6776 
"KRTAP11-1 WILD-TYPE" "KRTAP11-1 WILD-TYPE"   "KRTAP11-1 MUTATED" 
         TCGA-44-6777          TCGA-44-6778          TCGA-44-6779 
"KRTAP11-1 WILD-TYPE" "KRTAP11-1 WILD-TYPE" "KRTAP11-1 WILD-TYPE" 
         TCGA-49-4486          TCGA-49-4487          TCGA-49-4488 
"KRTAP11-1 WILD-TYPE" "KRTAP11-1 WILD-TYPE" "KRTAP11-1 WILD-TYPE" 
         TCGA-49-4490          TCGA-49-4494          TCGA-49-4501 
"KRTAP11-1 WILD-TYPE" "KRTAP11-1 WILD-TYPE" "KRTAP11-1 WILD-TYPE" 
         TCGA-49-4505          TCGA-49-4506          TCGA-49-4507 
"KRTAP11-1 WILD-TYPE" "KRTAP11-1 WILD-TYPE" "KRTAP11-1 WILD-TYPE" 
         TCGA-49-4510          TCGA-49-4512          TCGA-49-4514 
"KRTAP11-1 WILD-TYPE" "KRTAP11-1 WILD-TYPE" "KRTAP11-1 WILD-TYPE" 
         TCGA-49-6742          TCGA-49-6743          TCGA-49-6744 
"KRTAP11-1 WILD-TYPE" "KRTAP11-1 WILD-TYPE" "KRTAP11-1 WILD-TYPE" 
         TCGA-49-6745          TCGA-50-5044          TCGA-50-5045 
"KRTAP11-1 WILD-TYPE" "KRTAP11-1 WILD-TYPE" "KRTAP11-1 WILD-TYPE" 
         TCGA-50-5049          TCGA-50-5051          TCGA-50-5055 
"KRTAP11-1 WILD-TYPE" "KRTAP11-1 WILD-TYPE" "KRTAP11-1 WILD-TYPE" 
         TCGA-50-5066          TCGA-50-5068          TCGA-50-5072 
"KRTAP11-1 WILD-TYPE" "KRTAP11-1 WILD-TYPE" "KRTAP11-1 WILD-TYPE" 
         TCGA-50-5930          TCGA-50-5931          TCGA-50-5932 
"KRTAP11-1 WILD-TYPE" "KRTAP11-1 WILD-TYPE" "KRTAP11-1 WILD-TYPE" 
         TCGA-50-5933          TCGA-50-5935          TCGA-50-5936 
"KRTAP11-1 WILD-TYPE" "KRTAP11-1 WILD-TYPE" "KRTAP11-1 WILD-TYPE" 
         TCGA-50-5939          TCGA-50-5941          TCGA-50-5942 
"KRTAP11-1 WILD-TYPE" "KRTAP11-1 WILD-TYPE" "KRTAP11-1 WILD-TYPE" 
         TCGA-50-5944          TCGA-50-5946          TCGA-50-6590 
"KRTAP11-1 WILD-TYPE" "KRTAP11-1 WILD-TYPE" "KRTAP11-1 WILD-TYPE" 
         TCGA-50-6591          TCGA-50-6592          TCGA-50-6593 
"KRTAP11-1 WILD-TYPE" "KRTAP11-1 WILD-TYPE"   "KRTAP11-1 MUTATED" 
         TCGA-50-6594          TCGA-50-6595          TCGA-50-6597 
"KRTAP11-1 WILD-TYPE" "KRTAP11-1 WILD-TYPE" "KRTAP11-1 WILD-TYPE" 
         TCGA-55-1592          TCGA-55-1594          TCGA-55-1595 
"KRTAP11-1 WILD-TYPE" "KRTAP11-1 WILD-TYPE" "KRTAP11-1 WILD-TYPE" 
         TCGA-55-1596          TCGA-55-5899          TCGA-55-6543 
"KRTAP11-1 WILD-TYPE" "KRTAP11-1 WILD-TYPE" "KRTAP11-1 WILD-TYPE" 
         TCGA-55-6642          TCGA-55-6712          TCGA-64-1676 
"KRTAP11-1 WILD-TYPE" "KRTAP11-1 WILD-TYPE" "KRTAP11-1 WILD-TYPE" 
         TCGA-64-1677          TCGA-64-1678          TCGA-64-1680 
"KRTAP11-1 WILD-TYPE" "KRTAP11-1 WILD-TYPE" "KRTAP11-1 WILD-TYPE" 
         TCGA-64-5774          TCGA-64-5775          TCGA-64-5778 
"KRTAP11-1 WILD-TYPE" "KRTAP11-1 WILD-TYPE" "KRTAP11-1 WILD-TYPE" 
         TCGA-64-5779          TCGA-64-5781          TCGA-64-5815 
"KRTAP11-1 WILD-TYPE" "KRTAP11-1 WILD-TYPE" "KRTAP11-1 WILD-TYPE" 
         TCGA-67-3770          TCGA-67-3771          TCGA-67-3772 
"KRTAP11-1 WILD-TYPE" "KRTAP11-1 WILD-TYPE" "KRTAP11-1 WILD-TYPE" 
         TCGA-67-3773          TCGA-67-3774          TCGA-67-6215 
"KRTAP11-1 WILD-TYPE" "KRTAP11-1 WILD-TYPE" "KRTAP11-1 WILD-TYPE" 
         TCGA-67-6216          TCGA-67-6217          TCGA-71-6725 
"KRTAP11-1 WILD-TYPE" "KRTAP11-1 WILD-TYPE" "KRTAP11-1 WILD-TYPE" 
         TCGA-73-4658          TCGA-73-4659          TCGA-73-4662 
"KRTAP11-1 WILD-TYPE" "KRTAP11-1 WILD-TYPE" "KRTAP11-1 WILD-TYPE" 
         TCGA-73-4666          TCGA-73-4668          TCGA-73-4670 
"KRTAP11-1 WILD-TYPE" "KRTAP11-1 WILD-TYPE" "KRTAP11-1 WILD-TYPE" 
         TCGA-73-4675          TCGA-73-4676          TCGA-73-4677 
"KRTAP11-1 WILD-TYPE" "KRTAP11-1 WILD-TYPE" "KRTAP11-1 WILD-TYPE" 
         TCGA-91-6828          TCGA-91-6829          TCGA-91-6831 
"KRTAP11-1 WILD-TYPE" "KRTAP11-1 WILD-TYPE" "KRTAP11-1 WILD-TYPE" 
         TCGA-91-6835          TCGA-91-6836 
"KRTAP11-1 WILD-TYPE" "KRTAP11-1 WILD-TYPE" 
[1] "hr=" "3.4"
D94V2, continuous
D94V3, binary
[1] "tbl2"
                     cls
clus                  [,1] [,2]
  KRTAP11-1 MUTATED      5    1
  KRTAP11-1 WILD-TYPE   88   78
        clus
vv       KRTAP11-1 MUTATED KRTAP11-1 WILD-TYPE
  FEMALE                 5                  88
  MALE                   1                  78
D94V4, continuous
D94V5, multiclass
D94V6, multiclass
    clus
vv   KRTAP11-1 MUTATED KRTAP11-1 WILD-TYPE
  T1                 2                  39
  T2                 2                 106
  T3                 1                  13
  T4                 1                   7
D94V7, multiclass
       clus
vv      KRTAP11-1 MUTATED KRTAP11-1 WILD-TYPE
  N0                    4                  91
  N1                    0                  37
  N2+N3                 2                  33
D94V8, multiclass
    clus
vv   KRTAP11-1 MUTATED KRTAP11-1 WILD-TYPE
  M0                 4                 133
  M1                 0                   9
  MX                 2                  20
D94V9, multiclass
     clus
vv    KRTAP11-1 MUTATED KRTAP11-1 WILD-TYPE
  I                   3                  85
  II                  1                  32
  III                 2                  37
  IV                  0                   9
D94V10, binary
[1] "tbl2"
                     cls
clus                  [,1] [,2]
  KRTAP11-1 MUTATED      0    6
  KRTAP11-1 WILD-TYPE   16  150
     clus
vv    KRTAP11-1 MUTATED KRTAP11-1 WILD-TYPE
  NO                  0                  16
  YES                 6                 150
D94V11, continuous
D94V12, continuous
[1] "Remove cluster labels:" "KRTAP11-1 MUTATED"     
clus
  KRTAP11-1 MUTATED KRTAP11-1 WILD-TYPE 
                  2                  80 
         TCGA-05-4384          TCGA-05-4390          TCGA-05-4396 
"KRTAP11-1 WILD-TYPE" "KRTAP11-1 WILD-TYPE" "KRTAP11-1 WILD-TYPE" 
         TCGA-05-4403          TCGA-05-4410          TCGA-05-4415 
"KRTAP11-1 WILD-TYPE" "KRTAP11-1 WILD-TYPE" "KRTAP11-1 WILD-TYPE" 
         TCGA-05-4417          TCGA-05-4424          TCGA-05-4427 
"KRTAP11-1 WILD-TYPE" "KRTAP11-1 WILD-TYPE" "KRTAP11-1 WILD-TYPE" 
         TCGA-05-4433          TCGA-05-5420          TCGA-05-5423 
"KRTAP11-1 WILD-TYPE" "KRTAP11-1 WILD-TYPE" "KRTAP11-1 WILD-TYPE" 
         TCGA-05-5425          TCGA-05-5428          TCGA-35-4122 
"KRTAP11-1 WILD-TYPE" "KRTAP11-1 WILD-TYPE" "KRTAP11-1 WILD-TYPE" 
         TCGA-35-4123          TCGA-35-5375          TCGA-38-4629 
"KRTAP11-1 WILD-TYPE" "KRTAP11-1 WILD-TYPE" "KRTAP11-1 WILD-TYPE" 
         TCGA-38-4632          TCGA-44-2655          TCGA-44-2656 
"KRTAP11-1 WILD-TYPE" "KRTAP11-1 WILD-TYPE" "KRTAP11-1 WILD-TYPE" 
         TCGA-44-2657          TCGA-44-2659          TCGA-44-2662 
"KRTAP11-1 WILD-TYPE" "KRTAP11-1 WILD-TYPE" "KRTAP11-1 WILD-TYPE" 
         TCGA-44-2668          TCGA-44-3398          TCGA-44-3918 
"KRTAP11-1 WILD-TYPE" "KRTAP11-1 WILD-TYPE" "KRTAP11-1 WILD-TYPE" 
         TCGA-44-4112          TCGA-44-5645          TCGA-44-6145 
"KRTAP11-1 WILD-TYPE" "KRTAP11-1 WILD-TYPE" "KRTAP11-1 WILD-TYPE" 
         TCGA-44-6146          TCGA-44-6147          TCGA-44-6148 
"KRTAP11-1 WILD-TYPE" "KRTAP11-1 WILD-TYPE" "KRTAP11-1 WILD-TYPE" 
         TCGA-44-6775          TCGA-44-6777          TCGA-44-6778 
"KRTAP11-1 WILD-TYPE" "KRTAP11-1 WILD-TYPE" "KRTAP11-1 WILD-TYPE" 
         TCGA-44-6779          TCGA-49-4486          TCGA-49-4488 
"KRTAP11-1 WILD-TYPE" "KRTAP11-1 WILD-TYPE" "KRTAP11-1 WILD-TYPE" 
         TCGA-49-4494          TCGA-49-4505          TCGA-49-4507 
"KRTAP11-1 WILD-TYPE" "KRTAP11-1 WILD-TYPE" "KRTAP11-1 WILD-TYPE" 
         TCGA-50-5051          TCGA-50-5072          TCGA-50-5939 
"KRTAP11-1 WILD-TYPE" "KRTAP11-1 WILD-TYPE" "KRTAP11-1 WILD-TYPE" 
         TCGA-50-5942          TCGA-50-5946          TCGA-50-6590 
"KRTAP11-1 WILD-TYPE" "KRTAP11-1 WILD-TYPE" "KRTAP11-1 WILD-TYPE" 
         TCGA-50-6594          TCGA-50-6595          TCGA-55-1592 
"KRTAP11-1 WILD-TYPE" "KRTAP11-1 WILD-TYPE" "KRTAP11-1 WILD-TYPE" 
         TCGA-55-1595          TCGA-55-6543          TCGA-55-6712 
"KRTAP11-1 WILD-TYPE" "KRTAP11-1 WILD-TYPE" "KRTAP11-1 WILD-TYPE" 
         TCGA-64-1678          TCGA-64-1680          TCGA-64-5774 
"KRTAP11-1 WILD-TYPE" "KRTAP11-1 WILD-TYPE" "KRTAP11-1 WILD-TYPE" 
         TCGA-64-5778          TCGA-64-5779          TCGA-64-5781 
"KRTAP11-1 WILD-TYPE" "KRTAP11-1 WILD-TYPE" "KRTAP11-1 WILD-TYPE" 
         TCGA-64-5815          TCGA-67-6217          TCGA-73-4659 
"KRTAP11-1 WILD-TYPE" "KRTAP11-1 WILD-TYPE" "KRTAP11-1 WILD-TYPE" 
         TCGA-73-4662          TCGA-73-4666          TCGA-73-4668 
"KRTAP11-1 WILD-TYPE" "KRTAP11-1 WILD-TYPE" "KRTAP11-1 WILD-TYPE" 
         TCGA-73-4670          TCGA-73-4675          TCGA-73-4676 
"KRTAP11-1 WILD-TYPE" "KRTAP11-1 WILD-TYPE" "KRTAP11-1 WILD-TYPE" 
         TCGA-73-4677          TCGA-75-5122          TCGA-75-5125 
"KRTAP11-1 WILD-TYPE" "KRTAP11-1 WILD-TYPE" "KRTAP11-1 WILD-TYPE" 
         TCGA-75-5126          TCGA-75-5146          TCGA-75-6206 
"KRTAP11-1 WILD-TYPE" "KRTAP11-1 WILD-TYPE" "KRTAP11-1 WILD-TYPE" 
         TCGA-75-6207          TCGA-80-5611          TCGA-91-6828 
"KRTAP11-1 WILD-TYPE" "KRTAP11-1 WILD-TYPE" "KRTAP11-1 WILD-TYPE" 
         TCGA-91-6829          TCGA-91-6835 
"KRTAP11-1 WILD-TYPE" "KRTAP11-1 WILD-TYPE" 
D94V13, multiclass
                                             clus
vv                                            KRTAP11-1 MUTATED
  CURRENT REFORMED SMOKER FOR < OR = 15 YEARS                 3
  CURRENT REFORMED SMOKER FOR > 15 YEARS                      1
  CURRENT SMOKER                                              2
  LIFELONG NON-SMOKER                                         0
                                             clus
vv                                            KRTAP11-1 WILD-TYPE
  CURRENT REFORMED SMOKER FOR < OR = 15 YEARS                  59
  CURRENT REFORMED SMOKER FOR > 15 YEARS                       45
  CURRENT SMOKER                                               26
  LIFELONG NON-SMOKER                                          24
D94V14, continuous
[1] "Remove cluster labels:" "KRTAP11-1 MUTATED"     
clus
  KRTAP11-1 MUTATED KRTAP11-1 WILD-TYPE 
                  2                  66 
         TCGA-05-4384          TCGA-05-4390          TCGA-05-4396 
"KRTAP11-1 WILD-TYPE" "KRTAP11-1 WILD-TYPE" "KRTAP11-1 WILD-TYPE" 
         TCGA-05-4410          TCGA-05-4415          TCGA-05-4417 
"KRTAP11-1 WILD-TYPE" "KRTAP11-1 WILD-TYPE" "KRTAP11-1 WILD-TYPE" 
         TCGA-05-4424          TCGA-05-4427          TCGA-05-4433 
"KRTAP11-1 WILD-TYPE" "KRTAP11-1 WILD-TYPE" "KRTAP11-1 WILD-TYPE" 
         TCGA-05-5420          TCGA-05-5423          TCGA-05-5425 
"KRTAP11-1 WILD-TYPE" "KRTAP11-1 WILD-TYPE" "KRTAP11-1 WILD-TYPE" 
         TCGA-05-5428          TCGA-35-4122          TCGA-35-4123 
"KRTAP11-1 WILD-TYPE" "KRTAP11-1 WILD-TYPE" "KRTAP11-1 WILD-TYPE" 
         TCGA-35-5375          TCGA-38-4625          TCGA-38-4626 
"KRTAP11-1 WILD-TYPE" "KRTAP11-1 WILD-TYPE" "KRTAP11-1 WILD-TYPE" 
         TCGA-44-2655          TCGA-44-2656          TCGA-44-2657 
"KRTAP11-1 WILD-TYPE" "KRTAP11-1 WILD-TYPE" "KRTAP11-1 WILD-TYPE" 
         TCGA-44-2659          TCGA-44-2662          TCGA-44-2666 
"KRTAP11-1 WILD-TYPE" "KRTAP11-1 WILD-TYPE" "KRTAP11-1 WILD-TYPE" 
         TCGA-44-2668          TCGA-44-3396          TCGA-44-3398 
"KRTAP11-1 WILD-TYPE" "KRTAP11-1 WILD-TYPE" "KRTAP11-1 WILD-TYPE" 
         TCGA-44-3918          TCGA-44-4112          TCGA-44-5645 
"KRTAP11-1 WILD-TYPE" "KRTAP11-1 WILD-TYPE" "KRTAP11-1 WILD-TYPE" 
         TCGA-44-6144          TCGA-44-6145          TCGA-44-6147 
"KRTAP11-1 WILD-TYPE" "KRTAP11-1 WILD-TYPE" "KRTAP11-1 WILD-TYPE" 
         TCGA-44-6148          TCGA-44-6774          TCGA-44-6775 
"KRTAP11-1 WILD-TYPE" "KRTAP11-1 WILD-TYPE" "KRTAP11-1 WILD-TYPE" 
         TCGA-44-6777          TCGA-44-6778          TCGA-44-6779 
"KRTAP11-1 WILD-TYPE" "KRTAP11-1 WILD-TYPE" "KRTAP11-1 WILD-TYPE" 
         TCGA-49-4486          TCGA-49-4494          TCGA-49-4505 
"KRTAP11-1 WILD-TYPE" "KRTAP11-1 WILD-TYPE" "KRTAP11-1 WILD-TYPE" 
         TCGA-55-1592          TCGA-55-1594          TCGA-55-1595 
"KRTAP11-1 WILD-TYPE" "KRTAP11-1 WILD-TYPE" "KRTAP11-1 WILD-TYPE" 
         TCGA-55-1596          TCGA-55-5899          TCGA-55-6642 
"KRTAP11-1 WILD-TYPE" "KRTAP11-1 WILD-TYPE" "KRTAP11-1 WILD-TYPE" 
         TCGA-55-6712          TCGA-64-1677          TCGA-64-1678 
"KRTAP11-1 WILD-TYPE" "KRTAP11-1 WILD-TYPE" "KRTAP11-1 WILD-TYPE" 
         TCGA-64-1680          TCGA-64-5774          TCGA-64-5775 
"KRTAP11-1 WILD-TYPE" "KRTAP11-1 WILD-TYPE" "KRTAP11-1 WILD-TYPE" 
         TCGA-64-5778          TCGA-64-5779          TCGA-64-5781 
"KRTAP11-1 WILD-TYPE" "KRTAP11-1 WILD-TYPE" "KRTAP11-1 WILD-TYPE" 
         TCGA-73-4659          TCGA-73-4662          TCGA-73-4666 
"KRTAP11-1 WILD-TYPE" "KRTAP11-1 WILD-TYPE" "KRTAP11-1 WILD-TYPE" 
         TCGA-73-4668          TCGA-73-4670          TCGA-73-4675 
"KRTAP11-1 WILD-TYPE" "KRTAP11-1 WILD-TYPE" "KRTAP11-1 WILD-TYPE" 
         TCGA-73-4676          TCGA-91-6829          TCGA-91-6836 
"KRTAP11-1 WILD-TYPE" "KRTAP11-1 WILD-TYPE" "KRTAP11-1 WILD-TYPE" 

Clustering(95) Variable = RBM10 MUTATION ANALYSIS
D95V1, survival
                 sevent
clus2              0  1
  RBM10 MUTATED    7  3
  RBM10 WILD-TYPE 92 47
  RBM10 MUTATED RBM10 WILD-TYPE 
             10             139 
  RBM10 MUTATED RBM10 WILD-TYPE 
              3              47 
$`RBM10 MUTATED`
TCGA-05-4418 TCGA-05-4424 TCGA-35-3615 TCGA-44-2655 TCGA-44-4112 TCGA-49-4494 
        8.98        30.02         0.46        18.87         4.60        35.54 
TCGA-64-1676 TCGA-64-5775 TCGA-67-3770 TCGA-91-6828 
       56.81         0.10         0.99         1.22 

$`RBM10 WILD-TYPE`
TCGA-05-4249 TCGA-05-4250 TCGA-05-4382 TCGA-05-4384 TCGA-05-4390 TCGA-05-4396 
       38.07         3.98        19.92        14.01        37.02         9.96 
TCGA-05-4397 TCGA-05-4398 TCGA-05-4402 TCGA-05-4405 TCGA-05-4415 TCGA-05-4417 
       24.03        47.05         8.02        20.05         2.96        14.93 
TCGA-05-4420 TCGA-05-4426 TCGA-05-4427 TCGA-05-4430 TCGA-05-4432 TCGA-05-4433 
       29.95        26.01        26.01        25.02        25.02        24.00 
TCGA-05-4434 TCGA-05-5420 TCGA-05-5423 TCGA-05-5425 TCGA-05-5429 TCGA-05-5715 
       15.02         1.02         4.96         2.96         0.99         2.04 
TCGA-35-4122 TCGA-35-4123 TCGA-35-5375 TCGA-38-4625 TCGA-38-4626 TCGA-38-4627 
        7.36         5.95         8.68        47.61        85.32        37.71 
TCGA-38-4628 TCGA-38-4629 TCGA-38-4630 TCGA-38-4631 TCGA-38-4632 TCGA-38-6178 
       49.02        28.37        35.28        11.64        44.61         5.19 
TCGA-44-2656 TCGA-44-2657 TCGA-44-2659 TCGA-44-2661 TCGA-44-2662 TCGA-44-2665 
       19.10        13.15        17.39         3.39        15.78        13.15 
TCGA-44-2666 TCGA-44-2668 TCGA-44-3396 TCGA-44-3398 TCGA-44-3918 TCGA-44-3919 
        3.19         8.09        10.22         8.32         6.44         6.21 
TCGA-44-5643 TCGA-44-5645 TCGA-44-6144 TCGA-44-6145 TCGA-44-6146 TCGA-44-6147 
        3.48         6.84         0.30         3.35         9.93         7.76 
TCGA-44-6148 TCGA-44-6774 TCGA-44-6775 TCGA-44-6776 TCGA-44-6777 TCGA-44-6778 
        3.12         5.42         2.70        63.72        32.45        36.49 
TCGA-44-6779 TCGA-49-4486 TCGA-49-4487 TCGA-49-4488 TCGA-49-4490 TCGA-49-4501 
       16.41        76.21        28.11        28.57        12.66        46.72 
TCGA-49-4505 TCGA-49-4506 TCGA-49-4507 TCGA-49-4510 TCGA-49-4512 TCGA-49-4514 
       14.07        32.84         8.81        29.46        29.75        43.20 
TCGA-49-6742 TCGA-49-6743 TCGA-49-6744 TCGA-49-6745 TCGA-50-5044 TCGA-50-5045 
       15.02        12.13        12.99         4.93        20.48        71.47 
TCGA-50-5049 TCGA-50-5051 TCGA-50-5055 TCGA-50-5066 TCGA-50-5068 TCGA-50-5072 
       48.82        14.96        25.81         9.76        49.28         8.05 
TCGA-50-5930 TCGA-50-5931 TCGA-50-5932 TCGA-50-5933 TCGA-50-5935 TCGA-50-5936 
        9.27         8.78        35.87        77.88        21.47         8.45 
TCGA-50-5939 TCGA-50-5941 TCGA-50-5942 TCGA-50-5944 TCGA-50-5946 TCGA-50-6590 
       15.12         9.37         4.44        12.26        11.47        42.31 
TCGA-50-6591 TCGA-50-6592 TCGA-50-6593 TCGA-50-6594 TCGA-50-6595 TCGA-50-6597 
        3.88        25.51        11.05        12.16         6.21        33.37 
TCGA-55-1592 TCGA-55-1594 TCGA-55-1595 TCGA-55-1596 TCGA-55-5899 TCGA-55-6543 
       23.05        38.73        48.62        45.17         2.86         0.07 
TCGA-55-6642 TCGA-55-6712 TCGA-64-1677 TCGA-64-1678 TCGA-64-1680 TCGA-64-5774 
       32.61         0.79        20.65        39.09        37.02        83.84 
TCGA-64-5778 TCGA-64-5779 TCGA-64-5781 TCGA-64-5815 TCGA-67-3771 TCGA-67-3772 
       30.44        16.67        39.52         7.33         1.97         0.59 
TCGA-67-3773 TCGA-67-3774 TCGA-67-6215 TCGA-67-6216 TCGA-67-6217 TCGA-71-6725 
        2.04         0.59         0.89         0.69        13.87         2.01 
TCGA-73-4658 TCGA-73-4659 TCGA-73-4662 TCGA-73-4666 TCGA-73-4668 TCGA-73-4670 
       52.57        23.38        29.95        20.28        15.35         0.46 
TCGA-73-4675 TCGA-73-4676 TCGA-73-4677 TCGA-91-6829 TCGA-91-6831 TCGA-91-6835 
        1.32         4.01         1.25        41.33         1.28         1.15 
TCGA-91-6836 
        0.36 

  RBM10 MUTATED RBM10 WILD-TYPE 
           0.10            0.07 
  RBM10 MUTATED RBM10 WILD-TYPE 
          56.81           85.32 
  RBM10 MUTATED RBM10 WILD-TYPE 
           6.79           14.01 
[1] "0.1 - 56.8 (6.8)"  "0.1 - 85.3 (14.0)"
     TCGA-05-4249      TCGA-05-4250      TCGA-05-4382      TCGA-05-4384 
"RBM10 WILD-TYPE" "RBM10 WILD-TYPE" "RBM10 WILD-TYPE" "RBM10 WILD-TYPE" 
     TCGA-05-4390      TCGA-05-4396      TCGA-05-4397      TCGA-05-4398 
"RBM10 WILD-TYPE" "RBM10 WILD-TYPE" "RBM10 WILD-TYPE" "RBM10 WILD-TYPE" 
     TCGA-05-4402      TCGA-05-4405      TCGA-05-4415      TCGA-05-4417 
"RBM10 WILD-TYPE" "RBM10 WILD-TYPE" "RBM10 WILD-TYPE" "RBM10 WILD-TYPE" 
     TCGA-05-4418      TCGA-05-4420      TCGA-05-4424      TCGA-05-4426 
  "RBM10 MUTATED" "RBM10 WILD-TYPE"   "RBM10 MUTATED" "RBM10 WILD-TYPE" 
     TCGA-05-4427      TCGA-05-4430      TCGA-05-4432      TCGA-05-4433 
"RBM10 WILD-TYPE" "RBM10 WILD-TYPE" "RBM10 WILD-TYPE" "RBM10 WILD-TYPE" 
     TCGA-05-4434      TCGA-05-5420      TCGA-05-5423      TCGA-05-5425 
"RBM10 WILD-TYPE" "RBM10 WILD-TYPE" "RBM10 WILD-TYPE" "RBM10 WILD-TYPE" 
     TCGA-05-5429      TCGA-05-5715      TCGA-35-3615      TCGA-35-4122 
"RBM10 WILD-TYPE" "RBM10 WILD-TYPE"   "RBM10 MUTATED" "RBM10 WILD-TYPE" 
     TCGA-35-4123      TCGA-35-5375      TCGA-38-4625      TCGA-38-4626 
"RBM10 WILD-TYPE" "RBM10 WILD-TYPE" "RBM10 WILD-TYPE" "RBM10 WILD-TYPE" 
     TCGA-38-4627      TCGA-38-4628      TCGA-38-4629      TCGA-38-4630 
"RBM10 WILD-TYPE" "RBM10 WILD-TYPE" "RBM10 WILD-TYPE" "RBM10 WILD-TYPE" 
     TCGA-38-4631      TCGA-38-4632      TCGA-38-6178      TCGA-44-2655 
"RBM10 WILD-TYPE" "RBM10 WILD-TYPE" "RBM10 WILD-TYPE"   "RBM10 MUTATED" 
     TCGA-44-2656      TCGA-44-2657      TCGA-44-2659      TCGA-44-2661 
"RBM10 WILD-TYPE" "RBM10 WILD-TYPE" "RBM10 WILD-TYPE" "RBM10 WILD-TYPE" 
     TCGA-44-2662      TCGA-44-2665      TCGA-44-2666      TCGA-44-2668 
"RBM10 WILD-TYPE" "RBM10 WILD-TYPE" "RBM10 WILD-TYPE" "RBM10 WILD-TYPE" 
     TCGA-44-3396      TCGA-44-3398      TCGA-44-3918      TCGA-44-3919 
"RBM10 WILD-TYPE" "RBM10 WILD-TYPE" "RBM10 WILD-TYPE" "RBM10 WILD-TYPE" 
     TCGA-44-4112      TCGA-44-5643      TCGA-44-5645      TCGA-44-6144 
  "RBM10 MUTATED" "RBM10 WILD-TYPE" "RBM10 WILD-TYPE" "RBM10 WILD-TYPE" 
     TCGA-44-6145      TCGA-44-6146      TCGA-44-6147      TCGA-44-6148 
"RBM10 WILD-TYPE" "RBM10 WILD-TYPE" "RBM10 WILD-TYPE" "RBM10 WILD-TYPE" 
     TCGA-44-6774      TCGA-44-6775      TCGA-44-6776      TCGA-44-6777 
"RBM10 WILD-TYPE" "RBM10 WILD-TYPE" "RBM10 WILD-TYPE" "RBM10 WILD-TYPE" 
     TCGA-44-6778      TCGA-44-6779      TCGA-49-4486      TCGA-49-4487 
"RBM10 WILD-TYPE" "RBM10 WILD-TYPE" "RBM10 WILD-TYPE" "RBM10 WILD-TYPE" 
     TCGA-49-4488      TCGA-49-4490      TCGA-49-4494      TCGA-49-4501 
"RBM10 WILD-TYPE" "RBM10 WILD-TYPE"   "RBM10 MUTATED" "RBM10 WILD-TYPE" 
     TCGA-49-4505      TCGA-49-4506      TCGA-49-4507      TCGA-49-4510 
"RBM10 WILD-TYPE" "RBM10 WILD-TYPE" "RBM10 WILD-TYPE" "RBM10 WILD-TYPE" 
     TCGA-49-4512      TCGA-49-4514      TCGA-49-6742      TCGA-49-6743 
"RBM10 WILD-TYPE" "RBM10 WILD-TYPE" "RBM10 WILD-TYPE" "RBM10 WILD-TYPE" 
     TCGA-49-6744      TCGA-49-6745      TCGA-50-5044      TCGA-50-5045 
"RBM10 WILD-TYPE" "RBM10 WILD-TYPE" "RBM10 WILD-TYPE" "RBM10 WILD-TYPE" 
     TCGA-50-5049      TCGA-50-5051      TCGA-50-5055      TCGA-50-5066 
"RBM10 WILD-TYPE" "RBM10 WILD-TYPE" "RBM10 WILD-TYPE" "RBM10 WILD-TYPE" 
     TCGA-50-5068      TCGA-50-5072      TCGA-50-5930      TCGA-50-5931 
"RBM10 WILD-TYPE" "RBM10 WILD-TYPE" "RBM10 WILD-TYPE" "RBM10 WILD-TYPE" 
     TCGA-50-5932      TCGA-50-5933      TCGA-50-5935      TCGA-50-5936 
"RBM10 WILD-TYPE" "RBM10 WILD-TYPE" "RBM10 WILD-TYPE" "RBM10 WILD-TYPE" 
     TCGA-50-5939      TCGA-50-5941      TCGA-50-5942      TCGA-50-5944 
"RBM10 WILD-TYPE" "RBM10 WILD-TYPE" "RBM10 WILD-TYPE" "RBM10 WILD-TYPE" 
     TCGA-50-5946      TCGA-50-6590      TCGA-50-6591      TCGA-50-6592 
"RBM10 WILD-TYPE" "RBM10 WILD-TYPE" "RBM10 WILD-TYPE" "RBM10 WILD-TYPE" 
     TCGA-50-6593      TCGA-50-6594      TCGA-50-6595      TCGA-50-6597 
"RBM10 WILD-TYPE" "RBM10 WILD-TYPE" "RBM10 WILD-TYPE" "RBM10 WILD-TYPE" 
     TCGA-55-1592      TCGA-55-1594      TCGA-55-1595      TCGA-55-1596 
"RBM10 WILD-TYPE" "RBM10 WILD-TYPE" "RBM10 WILD-TYPE" "RBM10 WILD-TYPE" 
     TCGA-55-5899      TCGA-55-6543      TCGA-55-6642      TCGA-55-6712 
"RBM10 WILD-TYPE" "RBM10 WILD-TYPE" "RBM10 WILD-TYPE" "RBM10 WILD-TYPE" 
     TCGA-64-1676      TCGA-64-1677      TCGA-64-1678      TCGA-64-1680 
  "RBM10 MUTATED" "RBM10 WILD-TYPE" "RBM10 WILD-TYPE" "RBM10 WILD-TYPE" 
     TCGA-64-5774      TCGA-64-5775      TCGA-64-5778      TCGA-64-5779 
"RBM10 WILD-TYPE"   "RBM10 MUTATED" "RBM10 WILD-TYPE" "RBM10 WILD-TYPE" 
     TCGA-64-5781      TCGA-64-5815      TCGA-67-3770      TCGA-67-3771 
"RBM10 WILD-TYPE" "RBM10 WILD-TYPE"   "RBM10 MUTATED" "RBM10 WILD-TYPE" 
     TCGA-67-3772      TCGA-67-3773      TCGA-67-3774      TCGA-67-6215 
"RBM10 WILD-TYPE" "RBM10 WILD-TYPE" "RBM10 WILD-TYPE" "RBM10 WILD-TYPE" 
     TCGA-67-6216      TCGA-67-6217      TCGA-71-6725      TCGA-73-4658 
"RBM10 WILD-TYPE" "RBM10 WILD-TYPE" "RBM10 WILD-TYPE" "RBM10 WILD-TYPE" 
     TCGA-73-4659      TCGA-73-4662      TCGA-73-4666      TCGA-73-4668 
"RBM10 WILD-TYPE" "RBM10 WILD-TYPE" "RBM10 WILD-TYPE" "RBM10 WILD-TYPE" 
     TCGA-73-4670      TCGA-73-4675      TCGA-73-4676      TCGA-73-4677 
"RBM10 WILD-TYPE" "RBM10 WILD-TYPE" "RBM10 WILD-TYPE" "RBM10 WILD-TYPE" 
     TCGA-91-6828      TCGA-91-6829      TCGA-91-6831      TCGA-91-6835 
  "RBM10 MUTATED" "RBM10 WILD-TYPE" "RBM10 WILD-TYPE" "RBM10 WILD-TYPE" 
     TCGA-91-6836 
"RBM10 WILD-TYPE" 
     TCGA-05-4249      TCGA-05-4250      TCGA-05-4382      TCGA-05-4384 
"RBM10 WILD-TYPE" "RBM10 WILD-TYPE" "RBM10 WILD-TYPE" "RBM10 WILD-TYPE" 
     TCGA-05-4390      TCGA-05-4396      TCGA-05-4397      TCGA-05-4398 
"RBM10 WILD-TYPE" "RBM10 WILD-TYPE" "RBM10 WILD-TYPE" "RBM10 WILD-TYPE" 
     TCGA-05-4402      TCGA-05-4405      TCGA-05-4415      TCGA-05-4417 
"RBM10 WILD-TYPE" "RBM10 WILD-TYPE" "RBM10 WILD-TYPE" "RBM10 WILD-TYPE" 
     TCGA-05-4418      TCGA-05-4420      TCGA-05-4424      TCGA-05-4426 
  "RBM10 MUTATED" "RBM10 WILD-TYPE"   "RBM10 MUTATED" "RBM10 WILD-TYPE" 
     TCGA-05-4427      TCGA-05-4430      TCGA-05-4432      TCGA-05-4433 
"RBM10 WILD-TYPE" "RBM10 WILD-TYPE" "RBM10 WILD-TYPE" "RBM10 WILD-TYPE" 
     TCGA-05-4434      TCGA-05-5420      TCGA-05-5423      TCGA-05-5425 
"RBM10 WILD-TYPE" "RBM10 WILD-TYPE" "RBM10 WILD-TYPE" "RBM10 WILD-TYPE" 
     TCGA-05-5429      TCGA-05-5715      TCGA-35-3615      TCGA-35-4122 
"RBM10 WILD-TYPE" "RBM10 WILD-TYPE"   "RBM10 MUTATED" "RBM10 WILD-TYPE" 
     TCGA-35-4123      TCGA-35-5375      TCGA-38-4625      TCGA-38-4626 
"RBM10 WILD-TYPE" "RBM10 WILD-TYPE" "RBM10 WILD-TYPE" "RBM10 WILD-TYPE" 
     TCGA-38-4627      TCGA-38-4628      TCGA-38-4629      TCGA-38-4630 
"RBM10 WILD-TYPE" "RBM10 WILD-TYPE" "RBM10 WILD-TYPE" "RBM10 WILD-TYPE" 
     TCGA-38-4631      TCGA-38-4632      TCGA-38-6178      TCGA-44-2655 
"RBM10 WILD-TYPE" "RBM10 WILD-TYPE" "RBM10 WILD-TYPE"   "RBM10 MUTATED" 
     TCGA-44-2656      TCGA-44-2657      TCGA-44-2659      TCGA-44-2661 
"RBM10 WILD-TYPE" "RBM10 WILD-TYPE" "RBM10 WILD-TYPE" "RBM10 WILD-TYPE" 
     TCGA-44-2662      TCGA-44-2665      TCGA-44-2666      TCGA-44-2668 
"RBM10 WILD-TYPE" "RBM10 WILD-TYPE" "RBM10 WILD-TYPE" "RBM10 WILD-TYPE" 
     TCGA-44-3396      TCGA-44-3398      TCGA-44-3918      TCGA-44-3919 
"RBM10 WILD-TYPE" "RBM10 WILD-TYPE" "RBM10 WILD-TYPE" "RBM10 WILD-TYPE" 
     TCGA-44-4112      TCGA-44-5643      TCGA-44-5645      TCGA-44-6144 
  "RBM10 MUTATED" "RBM10 WILD-TYPE" "RBM10 WILD-TYPE" "RBM10 WILD-TYPE" 
     TCGA-44-6145      TCGA-44-6146      TCGA-44-6147      TCGA-44-6148 
"RBM10 WILD-TYPE" "RBM10 WILD-TYPE" "RBM10 WILD-TYPE" "RBM10 WILD-TYPE" 
     TCGA-44-6774      TCGA-44-6775      TCGA-44-6776      TCGA-44-6777 
"RBM10 WILD-TYPE" "RBM10 WILD-TYPE" "RBM10 WILD-TYPE" "RBM10 WILD-TYPE" 
     TCGA-44-6778      TCGA-44-6779      TCGA-49-4486      TCGA-49-4487 
"RBM10 WILD-TYPE" "RBM10 WILD-TYPE" "RBM10 WILD-TYPE" "RBM10 WILD-TYPE" 
     TCGA-49-4488      TCGA-49-4490      TCGA-49-4494      TCGA-49-4501 
"RBM10 WILD-TYPE" "RBM10 WILD-TYPE"   "RBM10 MUTATED" "RBM10 WILD-TYPE" 
     TCGA-49-4505      TCGA-49-4506      TCGA-49-4507      TCGA-49-4510 
"RBM10 WILD-TYPE" "RBM10 WILD-TYPE" "RBM10 WILD-TYPE" "RBM10 WILD-TYPE" 
     TCGA-49-4512      TCGA-49-4514      TCGA-49-6742      TCGA-49-6743 
"RBM10 WILD-TYPE" "RBM10 WILD-TYPE" "RBM10 WILD-TYPE" "RBM10 WILD-TYPE" 
     TCGA-49-6744      TCGA-49-6745      TCGA-50-5044      TCGA-50-5045 
"RBM10 WILD-TYPE" "RBM10 WILD-TYPE" "RBM10 WILD-TYPE" "RBM10 WILD-TYPE" 
     TCGA-50-5049      TCGA-50-5051      TCGA-50-5055      TCGA-50-5066 
"RBM10 WILD-TYPE" "RBM10 WILD-TYPE" "RBM10 WILD-TYPE" "RBM10 WILD-TYPE" 
     TCGA-50-5068      TCGA-50-5072      TCGA-50-5930      TCGA-50-5931 
"RBM10 WILD-TYPE" "RBM10 WILD-TYPE" "RBM10 WILD-TYPE" "RBM10 WILD-TYPE" 
     TCGA-50-5932      TCGA-50-5933      TCGA-50-5935      TCGA-50-5936 
"RBM10 WILD-TYPE" "RBM10 WILD-TYPE" "RBM10 WILD-TYPE" "RBM10 WILD-TYPE" 
     TCGA-50-5939      TCGA-50-5941      TCGA-50-5942      TCGA-50-5944 
"RBM10 WILD-TYPE" "RBM10 WILD-TYPE" "RBM10 WILD-TYPE" "RBM10 WILD-TYPE" 
     TCGA-50-5946      TCGA-50-6590      TCGA-50-6591      TCGA-50-6592 
"RBM10 WILD-TYPE" "RBM10 WILD-TYPE" "RBM10 WILD-TYPE" "RBM10 WILD-TYPE" 
     TCGA-50-6593      TCGA-50-6594      TCGA-50-6595      TCGA-50-6597 
"RBM10 WILD-TYPE" "RBM10 WILD-TYPE" "RBM10 WILD-TYPE" "RBM10 WILD-TYPE" 
     TCGA-55-1592      TCGA-55-1594      TCGA-55-1595      TCGA-55-1596 
"RBM10 WILD-TYPE" "RBM10 WILD-TYPE" "RBM10 WILD-TYPE" "RBM10 WILD-TYPE" 
     TCGA-55-5899      TCGA-55-6543      TCGA-55-6642      TCGA-55-6712 
"RBM10 WILD-TYPE" "RBM10 WILD-TYPE" "RBM10 WILD-TYPE" "RBM10 WILD-TYPE" 
     TCGA-64-1676      TCGA-64-1677      TCGA-64-1678      TCGA-64-1680 
  "RBM10 MUTATED" "RBM10 WILD-TYPE" "RBM10 WILD-TYPE" "RBM10 WILD-TYPE" 
     TCGA-64-5774      TCGA-64-5775      TCGA-64-5778      TCGA-64-5779 
"RBM10 WILD-TYPE"   "RBM10 MUTATED" "RBM10 WILD-TYPE" "RBM10 WILD-TYPE" 
     TCGA-64-5781      TCGA-64-5815      TCGA-67-3770      TCGA-67-3771 
"RBM10 WILD-TYPE" "RBM10 WILD-TYPE"   "RBM10 MUTATED" "RBM10 WILD-TYPE" 
     TCGA-67-3772      TCGA-67-3773      TCGA-67-3774      TCGA-67-6215 
"RBM10 WILD-TYPE" "RBM10 WILD-TYPE" "RBM10 WILD-TYPE" "RBM10 WILD-TYPE" 
     TCGA-67-6216      TCGA-67-6217      TCGA-71-6725      TCGA-73-4658 
"RBM10 WILD-TYPE" "RBM10 WILD-TYPE" "RBM10 WILD-TYPE" "RBM10 WILD-TYPE" 
     TCGA-73-4659      TCGA-73-4662      TCGA-73-4666      TCGA-73-4668 
"RBM10 WILD-TYPE" "RBM10 WILD-TYPE" "RBM10 WILD-TYPE" "RBM10 WILD-TYPE" 
     TCGA-73-4670      TCGA-73-4675      TCGA-73-4676      TCGA-73-4677 
"RBM10 WILD-TYPE" "RBM10 WILD-TYPE" "RBM10 WILD-TYPE" "RBM10 WILD-TYPE" 
     TCGA-91-6828      TCGA-91-6829      TCGA-91-6831      TCGA-91-6835 
  "RBM10 MUTATED" "RBM10 WILD-TYPE" "RBM10 WILD-TYPE" "RBM10 WILD-TYPE" 
     TCGA-91-6836 
"RBM10 WILD-TYPE" 
     TCGA-05-4249      TCGA-05-4250      TCGA-05-4382      TCGA-05-4384 
"RBM10 WILD-TYPE" "RBM10 WILD-TYPE" "RBM10 WILD-TYPE" "RBM10 WILD-TYPE" 
     TCGA-05-4390      TCGA-05-4396      TCGA-05-4397      TCGA-05-4398 
"RBM10 WILD-TYPE" "RBM10 WILD-TYPE" "RBM10 WILD-TYPE" "RBM10 WILD-TYPE" 
     TCGA-05-4402      TCGA-05-4405      TCGA-05-4415      TCGA-05-4417 
"RBM10 WILD-TYPE" "RBM10 WILD-TYPE" "RBM10 WILD-TYPE" "RBM10 WILD-TYPE" 
     TCGA-05-4418      TCGA-05-4420      TCGA-05-4424      TCGA-05-4426 
  "RBM10 MUTATED" "RBM10 WILD-TYPE"   "RBM10 MUTATED" "RBM10 WILD-TYPE" 
     TCGA-05-4427      TCGA-05-4430      TCGA-05-4432      TCGA-05-4433 
"RBM10 WILD-TYPE" "RBM10 WILD-TYPE" "RBM10 WILD-TYPE" "RBM10 WILD-TYPE" 
     TCGA-05-4434      TCGA-05-5420      TCGA-05-5423      TCGA-05-5425 
"RBM10 WILD-TYPE" "RBM10 WILD-TYPE" "RBM10 WILD-TYPE" "RBM10 WILD-TYPE" 
     TCGA-05-5429      TCGA-05-5715      TCGA-35-3615      TCGA-35-4122 
"RBM10 WILD-TYPE" "RBM10 WILD-TYPE"   "RBM10 MUTATED" "RBM10 WILD-TYPE" 
     TCGA-35-4123      TCGA-35-5375      TCGA-38-4625      TCGA-38-4626 
"RBM10 WILD-TYPE" "RBM10 WILD-TYPE" "RBM10 WILD-TYPE" "RBM10 WILD-TYPE" 
     TCGA-38-4627      TCGA-38-4628      TCGA-38-4629      TCGA-38-4630 
"RBM10 WILD-TYPE" "RBM10 WILD-TYPE" "RBM10 WILD-TYPE" "RBM10 WILD-TYPE" 
     TCGA-38-4631      TCGA-38-4632      TCGA-38-6178      TCGA-44-2655 
"RBM10 WILD-TYPE" "RBM10 WILD-TYPE" "RBM10 WILD-TYPE"   "RBM10 MUTATED" 
     TCGA-44-2656      TCGA-44-2657      TCGA-44-2659      TCGA-44-2661 
"RBM10 WILD-TYPE" "RBM10 WILD-TYPE" "RBM10 WILD-TYPE" "RBM10 WILD-TYPE" 
     TCGA-44-2662      TCGA-44-2665      TCGA-44-2666      TCGA-44-2668 
"RBM10 WILD-TYPE" "RBM10 WILD-TYPE" "RBM10 WILD-TYPE" "RBM10 WILD-TYPE" 
     TCGA-44-3396      TCGA-44-3398      TCGA-44-3918      TCGA-44-3919 
"RBM10 WILD-TYPE" "RBM10 WILD-TYPE" "RBM10 WILD-TYPE" "RBM10 WILD-TYPE" 
     TCGA-44-4112      TCGA-44-5643      TCGA-44-5645      TCGA-44-6144 
  "RBM10 MUTATED" "RBM10 WILD-TYPE" "RBM10 WILD-TYPE" "RBM10 WILD-TYPE" 
     TCGA-44-6145      TCGA-44-6146      TCGA-44-6147      TCGA-44-6148 
"RBM10 WILD-TYPE" "RBM10 WILD-TYPE" "RBM10 WILD-TYPE" "RBM10 WILD-TYPE" 
     TCGA-44-6774      TCGA-44-6775      TCGA-44-6776      TCGA-44-6777 
"RBM10 WILD-TYPE" "RBM10 WILD-TYPE" "RBM10 WILD-TYPE" "RBM10 WILD-TYPE" 
     TCGA-44-6778      TCGA-44-6779      TCGA-49-4486      TCGA-49-4487 
"RBM10 WILD-TYPE" "RBM10 WILD-TYPE" "RBM10 WILD-TYPE" "RBM10 WILD-TYPE" 
     TCGA-49-4488      TCGA-49-4490      TCGA-49-4494      TCGA-49-4501 
"RBM10 WILD-TYPE" "RBM10 WILD-TYPE"   "RBM10 MUTATED" "RBM10 WILD-TYPE" 
     TCGA-49-4505      TCGA-49-4506      TCGA-49-4507      TCGA-49-4510 
"RBM10 WILD-TYPE" "RBM10 WILD-TYPE" "RBM10 WILD-TYPE" "RBM10 WILD-TYPE" 
     TCGA-49-4512      TCGA-49-4514      TCGA-49-6742      TCGA-49-6743 
"RBM10 WILD-TYPE" "RBM10 WILD-TYPE" "RBM10 WILD-TYPE" "RBM10 WILD-TYPE" 
     TCGA-49-6744      TCGA-49-6745      TCGA-50-5044      TCGA-50-5045 
"RBM10 WILD-TYPE" "RBM10 WILD-TYPE" "RBM10 WILD-TYPE" "RBM10 WILD-TYPE" 
     TCGA-50-5049      TCGA-50-5051      TCGA-50-5055      TCGA-50-5066 
"RBM10 WILD-TYPE" "RBM10 WILD-TYPE" "RBM10 WILD-TYPE" "RBM10 WILD-TYPE" 
     TCGA-50-5068      TCGA-50-5072      TCGA-50-5930      TCGA-50-5931 
"RBM10 WILD-TYPE" "RBM10 WILD-TYPE" "RBM10 WILD-TYPE" "RBM10 WILD-TYPE" 
     TCGA-50-5932      TCGA-50-5933      TCGA-50-5935      TCGA-50-5936 
"RBM10 WILD-TYPE" "RBM10 WILD-TYPE" "RBM10 WILD-TYPE" "RBM10 WILD-TYPE" 
     TCGA-50-5939      TCGA-50-5941      TCGA-50-5942      TCGA-50-5944 
"RBM10 WILD-TYPE" "RBM10 WILD-TYPE" "RBM10 WILD-TYPE" "RBM10 WILD-TYPE" 
     TCGA-50-5946      TCGA-50-6590      TCGA-50-6591      TCGA-50-6592 
"RBM10 WILD-TYPE" "RBM10 WILD-TYPE" "RBM10 WILD-TYPE" "RBM10 WILD-TYPE" 
     TCGA-50-6593      TCGA-50-6594      TCGA-50-6595      TCGA-50-6597 
"RBM10 WILD-TYPE" "RBM10 WILD-TYPE" "RBM10 WILD-TYPE" "RBM10 WILD-TYPE" 
     TCGA-55-1592      TCGA-55-1594      TCGA-55-1595      TCGA-55-1596 
"RBM10 WILD-TYPE" "RBM10 WILD-TYPE" "RBM10 WILD-TYPE" "RBM10 WILD-TYPE" 
     TCGA-55-5899      TCGA-55-6543      TCGA-55-6642      TCGA-55-6712 
"RBM10 WILD-TYPE" "RBM10 WILD-TYPE" "RBM10 WILD-TYPE" "RBM10 WILD-TYPE" 
     TCGA-64-1676      TCGA-64-1677      TCGA-64-1678      TCGA-64-1680 
  "RBM10 MUTATED" "RBM10 WILD-TYPE" "RBM10 WILD-TYPE" "RBM10 WILD-TYPE" 
     TCGA-64-5774      TCGA-64-5775      TCGA-64-5778      TCGA-64-5779 
"RBM10 WILD-TYPE"   "RBM10 MUTATED" "RBM10 WILD-TYPE" "RBM10 WILD-TYPE" 
     TCGA-64-5781      TCGA-64-5815      TCGA-67-3770      TCGA-67-3771 
"RBM10 WILD-TYPE" "RBM10 WILD-TYPE"   "RBM10 MUTATED" "RBM10 WILD-TYPE" 
     TCGA-67-3772      TCGA-67-3773      TCGA-67-3774      TCGA-67-6215 
"RBM10 WILD-TYPE" "RBM10 WILD-TYPE" "RBM10 WILD-TYPE" "RBM10 WILD-TYPE" 
     TCGA-67-6216      TCGA-67-6217      TCGA-71-6725      TCGA-73-4658 
"RBM10 WILD-TYPE" "RBM10 WILD-TYPE" "RBM10 WILD-TYPE" "RBM10 WILD-TYPE" 
     TCGA-73-4659      TCGA-73-4662      TCGA-73-4666      TCGA-73-4668 
"RBM10 WILD-TYPE" "RBM10 WILD-TYPE" "RBM10 WILD-TYPE" "RBM10 WILD-TYPE" 
     TCGA-73-4670      TCGA-73-4675      TCGA-73-4676      TCGA-73-4677 
"RBM10 WILD-TYPE" "RBM10 WILD-TYPE" "RBM10 WILD-TYPE" "RBM10 WILD-TYPE" 
     TCGA-91-6828      TCGA-91-6829      TCGA-91-6831      TCGA-91-6835 
  "RBM10 MUTATED" "RBM10 WILD-TYPE" "RBM10 WILD-TYPE" "RBM10 WILD-TYPE" 
     TCGA-91-6836 
"RBM10 WILD-TYPE" 
[1] "hr=" "1.1"
D95V2, continuous
D95V3, binary
[1] "tbl2"
                 cls
clus              [,1] [,2]
  RBM10 MUTATED      3    9
  RBM10 WILD-TYPE   90   70
        clus
vv       RBM10 MUTATED RBM10 WILD-TYPE
  FEMALE             3              90
  MALE               9              70
D95V4, continuous
D95V5, multiclass
D95V6, multiclass
    clus
vv   RBM10 MUTATED RBM10 WILD-TYPE
  T1             4              37
  T2             3             105
  T3             3              11
  T4             2               6
D95V7, multiclass
       clus
vv      RBM10 MUTATED RBM10 WILD-TYPE
  N0                9              86
  N1                0              37
  N2+N3             3              32
D95V8, multiclass
    clus
vv   RBM10 MUTATED RBM10 WILD-TYPE
  M0            11             126
  M1             0               9
  MX             1              21
D95V9, multiclass
     clus
vv    RBM10 MUTATED RBM10 WILD-TYPE
  I               7              81
  II              1              32
  III             4              35
  IV              0               9
D95V10, binary
[1] "tbl2"
                 cls
clus              [,1] [,2]
  RBM10 MUTATED      0   12
  RBM10 WILD-TYPE   16  144
     clus
vv    RBM10 MUTATED RBM10 WILD-TYPE
  NO              0              16
  YES            12             144
D95V11, continuous
D95V12, continuous
D95V13, multiclass
                                             clus
vv                                            RBM10 MUTATED RBM10 WILD-TYPE
  CURRENT REFORMED SMOKER FOR < OR = 15 YEARS             1              61
  CURRENT REFORMED SMOKER FOR > 15 YEARS                  6              40
  CURRENT SMOKER                                          3              25
  LIFELONG NON-SMOKER                                     2              22
D95V14, continuous

Clustering(96) Variable = TMEM195 MUTATION ANALYSIS
D96V1, survival
                   sevent
clus2                0  1
  TMEM195 MUTATED    6  4
  TMEM195 WILD-TYPE 93 46
  TMEM195 MUTATED TMEM195 WILD-TYPE 
               10               139 
  TMEM195 MUTATED TMEM195 WILD-TYPE 
                4                46 
$`TMEM195 MUTATED`
TCGA-05-4382 TCGA-05-4397 TCGA-35-5375 TCGA-38-4626 TCGA-50-5935 TCGA-64-1676 
       19.92        24.03         8.68        85.32        21.47        56.81 
TCGA-64-5781 TCGA-67-3770 TCGA-73-4677 TCGA-91-6829 
       39.52         0.99         1.25        41.33 

$`TMEM195 WILD-TYPE`
TCGA-05-4249 TCGA-05-4250 TCGA-05-4384 TCGA-05-4390 TCGA-05-4396 TCGA-05-4398 
       38.07         3.98        14.01        37.02         9.96        47.05 
TCGA-05-4402 TCGA-05-4405 TCGA-05-4415 TCGA-05-4417 TCGA-05-4418 TCGA-05-4420 
        8.02        20.05         2.96        14.93         8.98        29.95 
TCGA-05-4424 TCGA-05-4426 TCGA-05-4427 TCGA-05-4430 TCGA-05-4432 TCGA-05-4433 
       30.02        26.01        26.01        25.02        25.02        24.00 
TCGA-05-4434 TCGA-05-5420 TCGA-05-5423 TCGA-05-5425 TCGA-05-5429 TCGA-05-5715 
       15.02         1.02         4.96         2.96         0.99         2.04 
TCGA-35-3615 TCGA-35-4122 TCGA-35-4123 TCGA-38-4625 TCGA-38-4627 TCGA-38-4628 
        0.46         7.36         5.95        47.61        37.71        49.02 
TCGA-38-4629 TCGA-38-4630 TCGA-38-4631 TCGA-38-4632 TCGA-38-6178 TCGA-44-2655 
       28.37        35.28        11.64        44.61         5.19        18.87 
TCGA-44-2656 TCGA-44-2657 TCGA-44-2659 TCGA-44-2661 TCGA-44-2662 TCGA-44-2665 
       19.10        13.15        17.39         3.39        15.78        13.15 
TCGA-44-2666 TCGA-44-2668 TCGA-44-3396 TCGA-44-3398 TCGA-44-3918 TCGA-44-3919 
        3.19         8.09        10.22         8.32         6.44         6.21 
TCGA-44-4112 TCGA-44-5643 TCGA-44-5645 TCGA-44-6144 TCGA-44-6145 TCGA-44-6146 
        4.60         3.48         6.84         0.30         3.35         9.93 
TCGA-44-6147 TCGA-44-6148 TCGA-44-6774 TCGA-44-6775 TCGA-44-6776 TCGA-44-6777 
        7.76         3.12         5.42         2.70        63.72        32.45 
TCGA-44-6778 TCGA-44-6779 TCGA-49-4486 TCGA-49-4487 TCGA-49-4488 TCGA-49-4490 
       36.49        16.41        76.21        28.11        28.57        12.66 
TCGA-49-4494 TCGA-49-4501 TCGA-49-4505 TCGA-49-4506 TCGA-49-4507 TCGA-49-4510 
       35.54        46.72        14.07        32.84         8.81        29.46 
TCGA-49-4512 TCGA-49-4514 TCGA-49-6742 TCGA-49-6743 TCGA-49-6744 TCGA-49-6745 
       29.75        43.20        15.02        12.13        12.99         4.93 
TCGA-50-5044 TCGA-50-5045 TCGA-50-5049 TCGA-50-5051 TCGA-50-5055 TCGA-50-5066 
       20.48        71.47        48.82        14.96        25.81         9.76 
TCGA-50-5068 TCGA-50-5072 TCGA-50-5930 TCGA-50-5931 TCGA-50-5932 TCGA-50-5933 
       49.28         8.05         9.27         8.78        35.87        77.88 
TCGA-50-5936 TCGA-50-5939 TCGA-50-5941 TCGA-50-5942 TCGA-50-5944 TCGA-50-5946 
        8.45        15.12         9.37         4.44        12.26        11.47 
TCGA-50-6590 TCGA-50-6591 TCGA-50-6592 TCGA-50-6593 TCGA-50-6594 TCGA-50-6595 
       42.31         3.88        25.51        11.05        12.16         6.21 
TCGA-50-6597 TCGA-55-1592 TCGA-55-1594 TCGA-55-1595 TCGA-55-1596 TCGA-55-5899 
       33.37        23.05        38.73        48.62        45.17         2.86 
TCGA-55-6543 TCGA-55-6642 TCGA-55-6712 TCGA-64-1677 TCGA-64-1678 TCGA-64-1680 
        0.07        32.61         0.79        20.65        39.09        37.02 
TCGA-64-5774 TCGA-64-5775 TCGA-64-5778 TCGA-64-5779 TCGA-64-5815 TCGA-67-3771 
       83.84         0.10        30.44        16.67         7.33         1.97 
TCGA-67-3772 TCGA-67-3773 TCGA-67-3774 TCGA-67-6215 TCGA-67-6216 TCGA-67-6217 
        0.59         2.04         0.59         0.89         0.69        13.87 
TCGA-71-6725 TCGA-73-4658 TCGA-73-4659 TCGA-73-4662 TCGA-73-4666 TCGA-73-4668 
        2.01        52.57        23.38        29.95        20.28        15.35 
TCGA-73-4670 TCGA-73-4675 TCGA-73-4676 TCGA-91-6828 TCGA-91-6831 TCGA-91-6835 
        0.46         1.32         4.01         1.22         1.28         1.15 
TCGA-91-6836 
        0.36 

  TMEM195 MUTATED TMEM195 WILD-TYPE 
             0.99              0.07 
  TMEM195 MUTATED TMEM195 WILD-TYPE 
            85.32             83.84 
  TMEM195 MUTATED TMEM195 WILD-TYPE 
            22.75             13.15 
[1] "1.0 - 85.3 (22.8)" "0.1 - 83.8 (13.2)"
       TCGA-05-4249        TCGA-05-4250        TCGA-05-4382        TCGA-05-4384 
"TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE"   "TMEM195 MUTATED" "TMEM195 WILD-TYPE" 
       TCGA-05-4390        TCGA-05-4396        TCGA-05-4397        TCGA-05-4398 
"TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE"   "TMEM195 MUTATED" "TMEM195 WILD-TYPE" 
       TCGA-05-4402        TCGA-05-4405        TCGA-05-4415        TCGA-05-4417 
"TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" 
       TCGA-05-4418        TCGA-05-4420        TCGA-05-4424        TCGA-05-4426 
"TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" 
       TCGA-05-4427        TCGA-05-4430        TCGA-05-4432        TCGA-05-4433 
"TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" 
       TCGA-05-4434        TCGA-05-5420        TCGA-05-5423        TCGA-05-5425 
"TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" 
       TCGA-05-5429        TCGA-05-5715        TCGA-35-3615        TCGA-35-4122 
"TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" 
       TCGA-35-4123        TCGA-35-5375        TCGA-38-4625        TCGA-38-4626 
"TMEM195 WILD-TYPE"   "TMEM195 MUTATED" "TMEM195 WILD-TYPE"   "TMEM195 MUTATED" 
       TCGA-38-4627        TCGA-38-4628        TCGA-38-4629        TCGA-38-4630 
"TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" 
       TCGA-38-4631        TCGA-38-4632        TCGA-38-6178        TCGA-44-2655 
"TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" 
       TCGA-44-2656        TCGA-44-2657        TCGA-44-2659        TCGA-44-2661 
"TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" 
       TCGA-44-2662        TCGA-44-2665        TCGA-44-2666        TCGA-44-2668 
"TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" 
       TCGA-44-3396        TCGA-44-3398        TCGA-44-3918        TCGA-44-3919 
"TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" 
       TCGA-44-4112        TCGA-44-5643        TCGA-44-5645        TCGA-44-6144 
"TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" 
       TCGA-44-6145        TCGA-44-6146        TCGA-44-6147        TCGA-44-6148 
"TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" 
       TCGA-44-6774        TCGA-44-6775        TCGA-44-6776        TCGA-44-6777 
"TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" 
       TCGA-44-6778        TCGA-44-6779        TCGA-49-4486        TCGA-49-4487 
"TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" 
       TCGA-49-4488        TCGA-49-4490        TCGA-49-4494        TCGA-49-4501 
"TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" 
       TCGA-49-4505        TCGA-49-4506        TCGA-49-4507        TCGA-49-4510 
"TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" 
       TCGA-49-4512        TCGA-49-4514        TCGA-49-6742        TCGA-49-6743 
"TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" 
       TCGA-49-6744        TCGA-49-6745        TCGA-50-5044        TCGA-50-5045 
"TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" 
       TCGA-50-5049        TCGA-50-5051        TCGA-50-5055        TCGA-50-5066 
"TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" 
       TCGA-50-5068        TCGA-50-5072        TCGA-50-5930        TCGA-50-5931 
"TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" 
       TCGA-50-5932        TCGA-50-5933        TCGA-50-5935        TCGA-50-5936 
"TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE"   "TMEM195 MUTATED" "TMEM195 WILD-TYPE" 
       TCGA-50-5939        TCGA-50-5941        TCGA-50-5942        TCGA-50-5944 
"TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" 
       TCGA-50-5946        TCGA-50-6590        TCGA-50-6591        TCGA-50-6592 
"TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" 
       TCGA-50-6593        TCGA-50-6594        TCGA-50-6595        TCGA-50-6597 
"TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" 
       TCGA-55-1592        TCGA-55-1594        TCGA-55-1595        TCGA-55-1596 
"TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" 
       TCGA-55-5899        TCGA-55-6543        TCGA-55-6642        TCGA-55-6712 
"TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" 
       TCGA-64-1676        TCGA-64-1677        TCGA-64-1678        TCGA-64-1680 
  "TMEM195 MUTATED" "TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" 
       TCGA-64-5774        TCGA-64-5775        TCGA-64-5778        TCGA-64-5779 
"TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" 
       TCGA-64-5781        TCGA-64-5815        TCGA-67-3770        TCGA-67-3771 
  "TMEM195 MUTATED" "TMEM195 WILD-TYPE"   "TMEM195 MUTATED" "TMEM195 WILD-TYPE" 
       TCGA-67-3772        TCGA-67-3773        TCGA-67-3774        TCGA-67-6215 
"TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" 
       TCGA-67-6216        TCGA-67-6217        TCGA-71-6725        TCGA-73-4658 
"TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" 
       TCGA-73-4659        TCGA-73-4662        TCGA-73-4666        TCGA-73-4668 
"TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" 
       TCGA-73-4670        TCGA-73-4675        TCGA-73-4676        TCGA-73-4677 
"TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE"   "TMEM195 MUTATED" 
       TCGA-91-6828        TCGA-91-6829        TCGA-91-6831        TCGA-91-6835 
"TMEM195 WILD-TYPE"   "TMEM195 MUTATED" "TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" 
       TCGA-91-6836 
"TMEM195 WILD-TYPE" 
       TCGA-05-4249        TCGA-05-4250        TCGA-05-4382        TCGA-05-4384 
"TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE"   "TMEM195 MUTATED" "TMEM195 WILD-TYPE" 
       TCGA-05-4390        TCGA-05-4396        TCGA-05-4397        TCGA-05-4398 
"TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE"   "TMEM195 MUTATED" "TMEM195 WILD-TYPE" 
       TCGA-05-4402        TCGA-05-4405        TCGA-05-4415        TCGA-05-4417 
"TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" 
       TCGA-05-4418        TCGA-05-4420        TCGA-05-4424        TCGA-05-4426 
"TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" 
       TCGA-05-4427        TCGA-05-4430        TCGA-05-4432        TCGA-05-4433 
"TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" 
       TCGA-05-4434        TCGA-05-5420        TCGA-05-5423        TCGA-05-5425 
"TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" 
       TCGA-05-5429        TCGA-05-5715        TCGA-35-3615        TCGA-35-4122 
"TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" 
       TCGA-35-4123        TCGA-35-5375        TCGA-38-4625        TCGA-38-4626 
"TMEM195 WILD-TYPE"   "TMEM195 MUTATED" "TMEM195 WILD-TYPE"   "TMEM195 MUTATED" 
       TCGA-38-4627        TCGA-38-4628        TCGA-38-4629        TCGA-38-4630 
"TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" 
       TCGA-38-4631        TCGA-38-4632        TCGA-38-6178        TCGA-44-2655 
"TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" 
       TCGA-44-2656        TCGA-44-2657        TCGA-44-2659        TCGA-44-2661 
"TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" 
       TCGA-44-2662        TCGA-44-2665        TCGA-44-2666        TCGA-44-2668 
"TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" 
       TCGA-44-3396        TCGA-44-3398        TCGA-44-3918        TCGA-44-3919 
"TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" 
       TCGA-44-4112        TCGA-44-5643        TCGA-44-5645        TCGA-44-6144 
"TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" 
       TCGA-44-6145        TCGA-44-6146        TCGA-44-6147        TCGA-44-6148 
"TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" 
       TCGA-44-6774        TCGA-44-6775        TCGA-44-6776        TCGA-44-6777 
"TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" 
       TCGA-44-6778        TCGA-44-6779        TCGA-49-4486        TCGA-49-4487 
"TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" 
       TCGA-49-4488        TCGA-49-4490        TCGA-49-4494        TCGA-49-4501 
"TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" 
       TCGA-49-4505        TCGA-49-4506        TCGA-49-4507        TCGA-49-4510 
"TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" 
       TCGA-49-4512        TCGA-49-4514        TCGA-49-6742        TCGA-49-6743 
"TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" 
       TCGA-49-6744        TCGA-49-6745        TCGA-50-5044        TCGA-50-5045 
"TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" 
       TCGA-50-5049        TCGA-50-5051        TCGA-50-5055        TCGA-50-5066 
"TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" 
       TCGA-50-5068        TCGA-50-5072        TCGA-50-5930        TCGA-50-5931 
"TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" 
       TCGA-50-5932        TCGA-50-5933        TCGA-50-5935        TCGA-50-5936 
"TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE"   "TMEM195 MUTATED" "TMEM195 WILD-TYPE" 
       TCGA-50-5939        TCGA-50-5941        TCGA-50-5942        TCGA-50-5944 
"TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" 
       TCGA-50-5946        TCGA-50-6590        TCGA-50-6591        TCGA-50-6592 
"TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" 
       TCGA-50-6593        TCGA-50-6594        TCGA-50-6595        TCGA-50-6597 
"TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" 
       TCGA-55-1592        TCGA-55-1594        TCGA-55-1595        TCGA-55-1596 
"TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" 
       TCGA-55-5899        TCGA-55-6543        TCGA-55-6642        TCGA-55-6712 
"TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" 
       TCGA-64-1676        TCGA-64-1677        TCGA-64-1678        TCGA-64-1680 
  "TMEM195 MUTATED" "TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" 
       TCGA-64-5774        TCGA-64-5775        TCGA-64-5778        TCGA-64-5779 
"TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" 
       TCGA-64-5781        TCGA-64-5815        TCGA-67-3770        TCGA-67-3771 
  "TMEM195 MUTATED" "TMEM195 WILD-TYPE"   "TMEM195 MUTATED" "TMEM195 WILD-TYPE" 
       TCGA-67-3772        TCGA-67-3773        TCGA-67-3774        TCGA-67-6215 
"TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" 
       TCGA-67-6216        TCGA-67-6217        TCGA-71-6725        TCGA-73-4658 
"TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" 
       TCGA-73-4659        TCGA-73-4662        TCGA-73-4666        TCGA-73-4668 
"TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" 
       TCGA-73-4670        TCGA-73-4675        TCGA-73-4676        TCGA-73-4677 
"TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE"   "TMEM195 MUTATED" 
       TCGA-91-6828        TCGA-91-6829        TCGA-91-6831        TCGA-91-6835 
"TMEM195 WILD-TYPE"   "TMEM195 MUTATED" "TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" 
       TCGA-91-6836 
"TMEM195 WILD-TYPE" 
       TCGA-05-4249        TCGA-05-4250        TCGA-05-4382        TCGA-05-4384 
"TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE"   "TMEM195 MUTATED" "TMEM195 WILD-TYPE" 
       TCGA-05-4390        TCGA-05-4396        TCGA-05-4397        TCGA-05-4398 
"TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE"   "TMEM195 MUTATED" "TMEM195 WILD-TYPE" 
       TCGA-05-4402        TCGA-05-4405        TCGA-05-4415        TCGA-05-4417 
"TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" 
       TCGA-05-4418        TCGA-05-4420        TCGA-05-4424        TCGA-05-4426 
"TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" 
       TCGA-05-4427        TCGA-05-4430        TCGA-05-4432        TCGA-05-4433 
"TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" 
       TCGA-05-4434        TCGA-05-5420        TCGA-05-5423        TCGA-05-5425 
"TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" 
       TCGA-05-5429        TCGA-05-5715        TCGA-35-3615        TCGA-35-4122 
"TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" 
       TCGA-35-4123        TCGA-35-5375        TCGA-38-4625        TCGA-38-4626 
"TMEM195 WILD-TYPE"   "TMEM195 MUTATED" "TMEM195 WILD-TYPE"   "TMEM195 MUTATED" 
       TCGA-38-4627        TCGA-38-4628        TCGA-38-4629        TCGA-38-4630 
"TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" 
       TCGA-38-4631        TCGA-38-4632        TCGA-38-6178        TCGA-44-2655 
"TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" 
       TCGA-44-2656        TCGA-44-2657        TCGA-44-2659        TCGA-44-2661 
"TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" 
       TCGA-44-2662        TCGA-44-2665        TCGA-44-2666        TCGA-44-2668 
"TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" 
       TCGA-44-3396        TCGA-44-3398        TCGA-44-3918        TCGA-44-3919 
"TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" 
       TCGA-44-4112        TCGA-44-5643        TCGA-44-5645        TCGA-44-6144 
"TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" 
       TCGA-44-6145        TCGA-44-6146        TCGA-44-6147        TCGA-44-6148 
"TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" 
       TCGA-44-6774        TCGA-44-6775        TCGA-44-6776        TCGA-44-6777 
"TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" 
       TCGA-44-6778        TCGA-44-6779        TCGA-49-4486        TCGA-49-4487 
"TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" 
       TCGA-49-4488        TCGA-49-4490        TCGA-49-4494        TCGA-49-4501 
"TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" 
       TCGA-49-4505        TCGA-49-4506        TCGA-49-4507        TCGA-49-4510 
"TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" 
       TCGA-49-4512        TCGA-49-4514        TCGA-49-6742        TCGA-49-6743 
"TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" 
       TCGA-49-6744        TCGA-49-6745        TCGA-50-5044        TCGA-50-5045 
"TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" 
       TCGA-50-5049        TCGA-50-5051        TCGA-50-5055        TCGA-50-5066 
"TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" 
       TCGA-50-5068        TCGA-50-5072        TCGA-50-5930        TCGA-50-5931 
"TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" 
       TCGA-50-5932        TCGA-50-5933        TCGA-50-5935        TCGA-50-5936 
"TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE"   "TMEM195 MUTATED" "TMEM195 WILD-TYPE" 
       TCGA-50-5939        TCGA-50-5941        TCGA-50-5942        TCGA-50-5944 
"TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" 
       TCGA-50-5946        TCGA-50-6590        TCGA-50-6591        TCGA-50-6592 
"TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" 
       TCGA-50-6593        TCGA-50-6594        TCGA-50-6595        TCGA-50-6597 
"TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" 
       TCGA-55-1592        TCGA-55-1594        TCGA-55-1595        TCGA-55-1596 
"TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" 
       TCGA-55-5899        TCGA-55-6543        TCGA-55-6642        TCGA-55-6712 
"TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" 
       TCGA-64-1676        TCGA-64-1677        TCGA-64-1678        TCGA-64-1680 
  "TMEM195 MUTATED" "TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" 
       TCGA-64-5774        TCGA-64-5775        TCGA-64-5778        TCGA-64-5779 
"TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" 
       TCGA-64-5781        TCGA-64-5815        TCGA-67-3770        TCGA-67-3771 
  "TMEM195 MUTATED" "TMEM195 WILD-TYPE"   "TMEM195 MUTATED" "TMEM195 WILD-TYPE" 
       TCGA-67-3772        TCGA-67-3773        TCGA-67-3774        TCGA-67-6215 
"TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" 
       TCGA-67-6216        TCGA-67-6217        TCGA-71-6725        TCGA-73-4658 
"TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" 
       TCGA-73-4659        TCGA-73-4662        TCGA-73-4666        TCGA-73-4668 
"TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" 
       TCGA-73-4670        TCGA-73-4675        TCGA-73-4676        TCGA-73-4677 
"TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE"   "TMEM195 MUTATED" 
       TCGA-91-6828        TCGA-91-6829        TCGA-91-6831        TCGA-91-6835 
"TMEM195 WILD-TYPE"   "TMEM195 MUTATED" "TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" 
       TCGA-91-6836 
"TMEM195 WILD-TYPE" 
[1] "hr=" "1.5"
D96V2, continuous
D96V3, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  TMEM195 MUTATED      4    7
  TMEM195 WILD-TYPE   89   72
        clus
vv       TMEM195 MUTATED TMEM195 WILD-TYPE
  FEMALE               4                89
  MALE                 7                72
D96V4, continuous
[1] "Remove cluster labels:" "TMEM195 MUTATED"       
clus
  TMEM195 MUTATED TMEM195 WILD-TYPE 
                1                11 
       TCGA-35-4122        TCGA-35-4123        TCGA-64-1677        TCGA-64-5778 
"TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" 
       TCGA-71-6725        TCGA-73-4659        TCGA-73-4662        TCGA-73-4666 
"TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" 
       TCGA-73-4668        TCGA-73-4676        TCGA-75-5122 
"TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" 
D96V5, multiclass
D96V6, multiclass
    clus
vv   TMEM195 MUTATED TMEM195 WILD-TYPE
  T1               3                38
  T2               8               100
  T3               0                14
  T4               0                 8
D96V7, multiclass
       clus
vv      TMEM195 MUTATED TMEM195 WILD-TYPE
  N0                  9                86
  N1                  1                36
  N2+N3               1                34
D96V8, multiclass
    clus
vv   TMEM195 MUTATED TMEM195 WILD-TYPE
  M0              10               127
  M1               0                 9
  MX               1                21
D96V9, multiclass
     clus
vv    TMEM195 MUTATED TMEM195 WILD-TYPE
  I                 8                80
  II                2                31
  III               1                38
  IV                0                 9
D96V10, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  TMEM195 MUTATED      1   10
  TMEM195 WILD-TYPE   15  146
     clus
vv    TMEM195 MUTATED TMEM195 WILD-TYPE
  NO                1                15
  YES              10               146
D96V11, continuous
D96V12, continuous
D96V13, multiclass
                                             clus
vv                                            TMEM195 MUTATED TMEM195 WILD-TYPE
  CURRENT REFORMED SMOKER FOR < OR = 15 YEARS               5                57
  CURRENT REFORMED SMOKER FOR > 15 YEARS                    2                44
  CURRENT SMOKER                                            3                25
  LIFELONG NON-SMOKER                                       0                24
D96V14, continuous

Clustering(97) Variable = C7ORF58 MUTATION ANALYSIS
D97V1, survival
                   sevent
clus2                0  1
  C7ORF58 MUTATED   12  4
  C7ORF58 WILD-TYPE 87 46
  C7ORF58 MUTATED C7ORF58 WILD-TYPE 
               16               133 
  C7ORF58 MUTATED C7ORF58 WILD-TYPE 
                4                46 
$`C7ORF58 MUTATED`
TCGA-05-4398 TCGA-05-4405 TCGA-05-4427 TCGA-05-5420 TCGA-38-4631 TCGA-44-2656 
       47.05        20.05        26.01         1.02        11.64        19.10 
TCGA-44-6774 TCGA-49-4507 TCGA-49-6743 TCGA-50-5933 TCGA-50-6593 TCGA-64-5778 
        5.42         8.81        12.13        77.88        11.05        30.44 
TCGA-64-5781 TCGA-64-5815 TCGA-73-4668 TCGA-91-6831 
       39.52         7.33        15.35         1.28 

$`C7ORF58 WILD-TYPE`
TCGA-05-4249 TCGA-05-4250 TCGA-05-4382 TCGA-05-4384 TCGA-05-4390 TCGA-05-4396 
       38.07         3.98        19.92        14.01        37.02         9.96 
TCGA-05-4397 TCGA-05-4402 TCGA-05-4415 TCGA-05-4417 TCGA-05-4418 TCGA-05-4420 
       24.03         8.02         2.96        14.93         8.98        29.95 
TCGA-05-4424 TCGA-05-4426 TCGA-05-4430 TCGA-05-4432 TCGA-05-4433 TCGA-05-4434 
       30.02        26.01        25.02        25.02        24.00        15.02 
TCGA-05-5423 TCGA-05-5425 TCGA-05-5429 TCGA-05-5715 TCGA-35-3615 TCGA-35-4122 
        4.96         2.96         0.99         2.04         0.46         7.36 
TCGA-35-4123 TCGA-35-5375 TCGA-38-4625 TCGA-38-4626 TCGA-38-4627 TCGA-38-4628 
        5.95         8.68        47.61        85.32        37.71        49.02 
TCGA-38-4629 TCGA-38-4630 TCGA-38-4632 TCGA-38-6178 TCGA-44-2655 TCGA-44-2657 
       28.37        35.28        44.61         5.19        18.87        13.15 
TCGA-44-2659 TCGA-44-2661 TCGA-44-2662 TCGA-44-2665 TCGA-44-2666 TCGA-44-2668 
       17.39         3.39        15.78        13.15         3.19         8.09 
TCGA-44-3396 TCGA-44-3398 TCGA-44-3918 TCGA-44-3919 TCGA-44-4112 TCGA-44-5643 
       10.22         8.32         6.44         6.21         4.60         3.48 
TCGA-44-5645 TCGA-44-6144 TCGA-44-6145 TCGA-44-6146 TCGA-44-6147 TCGA-44-6148 
        6.84         0.30         3.35         9.93         7.76         3.12 
TCGA-44-6775 TCGA-44-6776 TCGA-44-6777 TCGA-44-6778 TCGA-44-6779 TCGA-49-4486 
        2.70        63.72        32.45        36.49        16.41        76.21 
TCGA-49-4487 TCGA-49-4488 TCGA-49-4490 TCGA-49-4494 TCGA-49-4501 TCGA-49-4505 
       28.11        28.57        12.66        35.54        46.72        14.07 
TCGA-49-4506 TCGA-49-4510 TCGA-49-4512 TCGA-49-4514 TCGA-49-6742 TCGA-49-6744 
       32.84        29.46        29.75        43.20        15.02        12.99 
TCGA-49-6745 TCGA-50-5044 TCGA-50-5045 TCGA-50-5049 TCGA-50-5051 TCGA-50-5055 
        4.93        20.48        71.47        48.82        14.96        25.81 
TCGA-50-5066 TCGA-50-5068 TCGA-50-5072 TCGA-50-5930 TCGA-50-5931 TCGA-50-5932 
        9.76        49.28         8.05         9.27         8.78        35.87 
TCGA-50-5935 TCGA-50-5936 TCGA-50-5939 TCGA-50-5941 TCGA-50-5942 TCGA-50-5944 
       21.47         8.45        15.12         9.37         4.44        12.26 
TCGA-50-5946 TCGA-50-6590 TCGA-50-6591 TCGA-50-6592 TCGA-50-6594 TCGA-50-6595 
       11.47        42.31         3.88        25.51        12.16         6.21 
TCGA-50-6597 TCGA-55-1592 TCGA-55-1594 TCGA-55-1595 TCGA-55-1596 TCGA-55-5899 
       33.37        23.05        38.73        48.62        45.17         2.86 
TCGA-55-6543 TCGA-55-6642 TCGA-55-6712 TCGA-64-1676 TCGA-64-1677 TCGA-64-1678 
        0.07        32.61         0.79        56.81        20.65        39.09 
TCGA-64-1680 TCGA-64-5774 TCGA-64-5775 TCGA-64-5779 TCGA-67-3770 TCGA-67-3771 
       37.02        83.84         0.10        16.67         0.99         1.97 
TCGA-67-3772 TCGA-67-3773 TCGA-67-3774 TCGA-67-6215 TCGA-67-6216 TCGA-67-6217 
        0.59         2.04         0.59         0.89         0.69        13.87 
TCGA-71-6725 TCGA-73-4658 TCGA-73-4659 TCGA-73-4662 TCGA-73-4666 TCGA-73-4670 
        2.01        52.57        23.38        29.95        20.28         0.46 
TCGA-73-4675 TCGA-73-4676 TCGA-73-4677 TCGA-91-6828 TCGA-91-6829 TCGA-91-6835 
        1.32         4.01         1.25         1.22        41.33         1.15 
TCGA-91-6836 
        0.36 

  C7ORF58 MUTATED C7ORF58 WILD-TYPE 
             1.02              0.07 
  C7ORF58 MUTATED C7ORF58 WILD-TYPE 
            77.88             85.32 
  C7ORF58 MUTATED C7ORF58 WILD-TYPE 
            13.74             13.87 
[1] "1.0 - 77.9 (13.7)" "0.1 - 85.3 (13.9)"
       TCGA-05-4249        TCGA-05-4250        TCGA-05-4382        TCGA-05-4384 
"C7ORF58 WILD-TYPE" "C7ORF58 WILD-TYPE" "C7ORF58 WILD-TYPE" "C7ORF58 WILD-TYPE" 
       TCGA-05-4390        TCGA-05-4396        TCGA-05-4397        TCGA-05-4398 
"C7ORF58 WILD-TYPE" "C7ORF58 WILD-TYPE" "C7ORF58 WILD-TYPE"   "C7ORF58 MUTATED" 
       TCGA-05-4402        TCGA-05-4405        TCGA-05-4415        TCGA-05-4417 
"C7ORF58 WILD-TYPE"   "C7ORF58 MUTATED" "C7ORF58 WILD-TYPE" "C7ORF58 WILD-TYPE" 
       TCGA-05-4418        TCGA-05-4420        TCGA-05-4424        TCGA-05-4426 
"C7ORF58 WILD-TYPE" "C7ORF58 WILD-TYPE" "C7ORF58 WILD-TYPE" "C7ORF58 WILD-TYPE" 
       TCGA-05-4427        TCGA-05-4430        TCGA-05-4432        TCGA-05-4433 
  "C7ORF58 MUTATED" "C7ORF58 WILD-TYPE" "C7ORF58 WILD-TYPE" "C7ORF58 WILD-TYPE" 
       TCGA-05-4434        TCGA-05-5420        TCGA-05-5423        TCGA-05-5425 
"C7ORF58 WILD-TYPE"   "C7ORF58 MUTATED" "C7ORF58 WILD-TYPE" "C7ORF58 WILD-TYPE" 
       TCGA-05-5429        TCGA-05-5715        TCGA-35-3615        TCGA-35-4122 
"C7ORF58 WILD-TYPE" "C7ORF58 WILD-TYPE" "C7ORF58 WILD-TYPE" "C7ORF58 WILD-TYPE" 
       TCGA-35-4123        TCGA-35-5375        TCGA-38-4625        TCGA-38-4626 
"C7ORF58 WILD-TYPE" "C7ORF58 WILD-TYPE" "C7ORF58 WILD-TYPE" "C7ORF58 WILD-TYPE" 
       TCGA-38-4627        TCGA-38-4628        TCGA-38-4629        TCGA-38-4630 
"C7ORF58 WILD-TYPE" "C7ORF58 WILD-TYPE" "C7ORF58 WILD-TYPE" "C7ORF58 WILD-TYPE" 
       TCGA-38-4631        TCGA-38-4632        TCGA-38-6178        TCGA-44-2655 
  "C7ORF58 MUTATED" "C7ORF58 WILD-TYPE" "C7ORF58 WILD-TYPE" "C7ORF58 WILD-TYPE" 
       TCGA-44-2656        TCGA-44-2657        TCGA-44-2659        TCGA-44-2661 
  "C7ORF58 MUTATED" "C7ORF58 WILD-TYPE" "C7ORF58 WILD-TYPE" "C7ORF58 WILD-TYPE" 
       TCGA-44-2662        TCGA-44-2665        TCGA-44-2666        TCGA-44-2668 
"C7ORF58 WILD-TYPE" "C7ORF58 WILD-TYPE" "C7ORF58 WILD-TYPE" "C7ORF58 WILD-TYPE" 
       TCGA-44-3396        TCGA-44-3398        TCGA-44-3918        TCGA-44-3919 
"C7ORF58 WILD-TYPE" "C7ORF58 WILD-TYPE" "C7ORF58 WILD-TYPE" "C7ORF58 WILD-TYPE" 
       TCGA-44-4112        TCGA-44-5643        TCGA-44-5645        TCGA-44-6144 
"C7ORF58 WILD-TYPE" "C7ORF58 WILD-TYPE" "C7ORF58 WILD-TYPE" "C7ORF58 WILD-TYPE" 
       TCGA-44-6145        TCGA-44-6146        TCGA-44-6147        TCGA-44-6148 
"C7ORF58 WILD-TYPE" "C7ORF58 WILD-TYPE" "C7ORF58 WILD-TYPE" "C7ORF58 WILD-TYPE" 
       TCGA-44-6774        TCGA-44-6775        TCGA-44-6776        TCGA-44-6777 
  "C7ORF58 MUTATED" "C7ORF58 WILD-TYPE" "C7ORF58 WILD-TYPE" "C7ORF58 WILD-TYPE" 
       TCGA-44-6778        TCGA-44-6779        TCGA-49-4486        TCGA-49-4487 
"C7ORF58 WILD-TYPE" "C7ORF58 WILD-TYPE" "C7ORF58 WILD-TYPE" "C7ORF58 WILD-TYPE" 
       TCGA-49-4488        TCGA-49-4490        TCGA-49-4494        TCGA-49-4501 
"C7ORF58 WILD-TYPE" "C7ORF58 WILD-TYPE" "C7ORF58 WILD-TYPE" "C7ORF58 WILD-TYPE" 
       TCGA-49-4505        TCGA-49-4506        TCGA-49-4507        TCGA-49-4510 
"C7ORF58 WILD-TYPE" "C7ORF58 WILD-TYPE"   "C7ORF58 MUTATED" "C7ORF58 WILD-TYPE" 
       TCGA-49-4512        TCGA-49-4514        TCGA-49-6742        TCGA-49-6743 
"C7ORF58 WILD-TYPE" "C7ORF58 WILD-TYPE" "C7ORF58 WILD-TYPE"   "C7ORF58 MUTATED" 
       TCGA-49-6744        TCGA-49-6745        TCGA-50-5044        TCGA-50-5045 
"C7ORF58 WILD-TYPE" "C7ORF58 WILD-TYPE" "C7ORF58 WILD-TYPE" "C7ORF58 WILD-TYPE" 
       TCGA-50-5049        TCGA-50-5051        TCGA-50-5055        TCGA-50-5066 
"C7ORF58 WILD-TYPE" "C7ORF58 WILD-TYPE" "C7ORF58 WILD-TYPE" "C7ORF58 WILD-TYPE" 
       TCGA-50-5068        TCGA-50-5072        TCGA-50-5930        TCGA-50-5931 
"C7ORF58 WILD-TYPE" "C7ORF58 WILD-TYPE" "C7ORF58 WILD-TYPE" "C7ORF58 WILD-TYPE" 
       TCGA-50-5932        TCGA-50-5933        TCGA-50-5935        TCGA-50-5936 
"C7ORF58 WILD-TYPE"   "C7ORF58 MUTATED" "C7ORF58 WILD-TYPE" "C7ORF58 WILD-TYPE" 
       TCGA-50-5939        TCGA-50-5941        TCGA-50-5942        TCGA-50-5944 
"C7ORF58 WILD-TYPE" "C7ORF58 WILD-TYPE" "C7ORF58 WILD-TYPE" "C7ORF58 WILD-TYPE" 
       TCGA-50-5946        TCGA-50-6590        TCGA-50-6591        TCGA-50-6592 
"C7ORF58 WILD-TYPE" "C7ORF58 WILD-TYPE" "C7ORF58 WILD-TYPE" "C7ORF58 WILD-TYPE" 
       TCGA-50-6593        TCGA-50-6594        TCGA-50-6595        TCGA-50-6597 
  "C7ORF58 MUTATED" "C7ORF58 WILD-TYPE" "C7ORF58 WILD-TYPE" "C7ORF58 WILD-TYPE" 
       TCGA-55-1592        TCGA-55-1594        TCGA-55-1595        TCGA-55-1596 
"C7ORF58 WILD-TYPE" "C7ORF58 WILD-TYPE" "C7ORF58 WILD-TYPE" "C7ORF58 WILD-TYPE" 
       TCGA-55-5899        TCGA-55-6543        TCGA-55-6642        TCGA-55-6712 
"C7ORF58 WILD-TYPE" "C7ORF58 WILD-TYPE" "C7ORF58 WILD-TYPE" "C7ORF58 WILD-TYPE" 
       TCGA-64-1676        TCGA-64-1677        TCGA-64-1678        TCGA-64-1680 
"C7ORF58 WILD-TYPE" "C7ORF58 WILD-TYPE" "C7ORF58 WILD-TYPE" "C7ORF58 WILD-TYPE" 
       TCGA-64-5774        TCGA-64-5775        TCGA-64-5778        TCGA-64-5779 
"C7ORF58 WILD-TYPE" "C7ORF58 WILD-TYPE"   "C7ORF58 MUTATED" "C7ORF58 WILD-TYPE" 
       TCGA-64-5781        TCGA-64-5815        TCGA-67-3770        TCGA-67-3771 
  "C7ORF58 MUTATED"   "C7ORF58 MUTATED" "C7ORF58 WILD-TYPE" "C7ORF58 WILD-TYPE" 
       TCGA-67-3772        TCGA-67-3773        TCGA-67-3774        TCGA-67-6215 
"C7ORF58 WILD-TYPE" "C7ORF58 WILD-TYPE" "C7ORF58 WILD-TYPE" "C7ORF58 WILD-TYPE" 
       TCGA-67-6216        TCGA-67-6217        TCGA-71-6725        TCGA-73-4658 
"C7ORF58 WILD-TYPE" "C7ORF58 WILD-TYPE" "C7ORF58 WILD-TYPE" "C7ORF58 WILD-TYPE" 
       TCGA-73-4659        TCGA-73-4662        TCGA-73-4666        TCGA-73-4668 
"C7ORF58 WILD-TYPE" "C7ORF58 WILD-TYPE" "C7ORF58 WILD-TYPE"   "C7ORF58 MUTATED" 
       TCGA-73-4670        TCGA-73-4675        TCGA-73-4676        TCGA-73-4677 
"C7ORF58 WILD-TYPE" "C7ORF58 WILD-TYPE" "C7ORF58 WILD-TYPE" "C7ORF58 WILD-TYPE" 
       TCGA-91-6828        TCGA-91-6829        TCGA-91-6831        TCGA-91-6835 
"C7ORF58 WILD-TYPE" "C7ORF58 WILD-TYPE"   "C7ORF58 MUTATED" "C7ORF58 WILD-TYPE" 
       TCGA-91-6836 
"C7ORF58 WILD-TYPE" 
       TCGA-05-4249        TCGA-05-4250        TCGA-05-4382        TCGA-05-4384 
"C7ORF58 WILD-TYPE" "C7ORF58 WILD-TYPE" "C7ORF58 WILD-TYPE" "C7ORF58 WILD-TYPE" 
       TCGA-05-4390        TCGA-05-4396        TCGA-05-4397        TCGA-05-4398 
"C7ORF58 WILD-TYPE" "C7ORF58 WILD-TYPE" "C7ORF58 WILD-TYPE"   "C7ORF58 MUTATED" 
       TCGA-05-4402        TCGA-05-4405        TCGA-05-4415        TCGA-05-4417 
"C7ORF58 WILD-TYPE"   "C7ORF58 MUTATED" "C7ORF58 WILD-TYPE" "C7ORF58 WILD-TYPE" 
       TCGA-05-4418        TCGA-05-4420        TCGA-05-4424        TCGA-05-4426 
"C7ORF58 WILD-TYPE" "C7ORF58 WILD-TYPE" "C7ORF58 WILD-TYPE" "C7ORF58 WILD-TYPE" 
       TCGA-05-4427        TCGA-05-4430        TCGA-05-4432        TCGA-05-4433 
  "C7ORF58 MUTATED" "C7ORF58 WILD-TYPE" "C7ORF58 WILD-TYPE" "C7ORF58 WILD-TYPE" 
       TCGA-05-4434        TCGA-05-5420        TCGA-05-5423        TCGA-05-5425 
"C7ORF58 WILD-TYPE"   "C7ORF58 MUTATED" "C7ORF58 WILD-TYPE" "C7ORF58 WILD-TYPE" 
       TCGA-05-5429        TCGA-05-5715        TCGA-35-3615        TCGA-35-4122 
"C7ORF58 WILD-TYPE" "C7ORF58 WILD-TYPE" "C7ORF58 WILD-TYPE" "C7ORF58 WILD-TYPE" 
       TCGA-35-4123        TCGA-35-5375        TCGA-38-4625        TCGA-38-4626 
"C7ORF58 WILD-TYPE" "C7ORF58 WILD-TYPE" "C7ORF58 WILD-TYPE" "C7ORF58 WILD-TYPE" 
       TCGA-38-4627        TCGA-38-4628        TCGA-38-4629        TCGA-38-4630 
"C7ORF58 WILD-TYPE" "C7ORF58 WILD-TYPE" "C7ORF58 WILD-TYPE" "C7ORF58 WILD-TYPE" 
       TCGA-38-4631        TCGA-38-4632        TCGA-38-6178        TCGA-44-2655 
  "C7ORF58 MUTATED" "C7ORF58 WILD-TYPE" "C7ORF58 WILD-TYPE" "C7ORF58 WILD-TYPE" 
       TCGA-44-2656        TCGA-44-2657        TCGA-44-2659        TCGA-44-2661 
  "C7ORF58 MUTATED" "C7ORF58 WILD-TYPE" "C7ORF58 WILD-TYPE" "C7ORF58 WILD-TYPE" 
       TCGA-44-2662        TCGA-44-2665        TCGA-44-2666        TCGA-44-2668 
"C7ORF58 WILD-TYPE" "C7ORF58 WILD-TYPE" "C7ORF58 WILD-TYPE" "C7ORF58 WILD-TYPE" 
       TCGA-44-3396        TCGA-44-3398        TCGA-44-3918        TCGA-44-3919 
"C7ORF58 WILD-TYPE" "C7ORF58 WILD-TYPE" "C7ORF58 WILD-TYPE" "C7ORF58 WILD-TYPE" 
       TCGA-44-4112        TCGA-44-5643        TCGA-44-5645        TCGA-44-6144 
"C7ORF58 WILD-TYPE" "C7ORF58 WILD-TYPE" "C7ORF58 WILD-TYPE" "C7ORF58 WILD-TYPE" 
       TCGA-44-6145        TCGA-44-6146        TCGA-44-6147        TCGA-44-6148 
"C7ORF58 WILD-TYPE" "C7ORF58 WILD-TYPE" "C7ORF58 WILD-TYPE" "C7ORF58 WILD-TYPE" 
       TCGA-44-6774        TCGA-44-6775        TCGA-44-6776        TCGA-44-6777 
  "C7ORF58 MUTATED" "C7ORF58 WILD-TYPE" "C7ORF58 WILD-TYPE" "C7ORF58 WILD-TYPE" 
       TCGA-44-6778        TCGA-44-6779        TCGA-49-4486        TCGA-49-4487 
"C7ORF58 WILD-TYPE" "C7ORF58 WILD-TYPE" "C7ORF58 WILD-TYPE" "C7ORF58 WILD-TYPE" 
       TCGA-49-4488        TCGA-49-4490        TCGA-49-4494        TCGA-49-4501 
"C7ORF58 WILD-TYPE" "C7ORF58 WILD-TYPE" "C7ORF58 WILD-TYPE" "C7ORF58 WILD-TYPE" 
       TCGA-49-4505        TCGA-49-4506        TCGA-49-4507        TCGA-49-4510 
"C7ORF58 WILD-TYPE" "C7ORF58 WILD-TYPE"   "C7ORF58 MUTATED" "C7ORF58 WILD-TYPE" 
       TCGA-49-4512        TCGA-49-4514        TCGA-49-6742        TCGA-49-6743 
"C7ORF58 WILD-TYPE" "C7ORF58 WILD-TYPE" "C7ORF58 WILD-TYPE"   "C7ORF58 MUTATED" 
       TCGA-49-6744        TCGA-49-6745        TCGA-50-5044        TCGA-50-5045 
"C7ORF58 WILD-TYPE" "C7ORF58 WILD-TYPE" "C7ORF58 WILD-TYPE" "C7ORF58 WILD-TYPE" 
       TCGA-50-5049        TCGA-50-5051        TCGA-50-5055        TCGA-50-5066 
"C7ORF58 WILD-TYPE" "C7ORF58 WILD-TYPE" "C7ORF58 WILD-TYPE" "C7ORF58 WILD-TYPE" 
       TCGA-50-5068        TCGA-50-5072        TCGA-50-5930        TCGA-50-5931 
"C7ORF58 WILD-TYPE" "C7ORF58 WILD-TYPE" "C7ORF58 WILD-TYPE" "C7ORF58 WILD-TYPE" 
       TCGA-50-5932        TCGA-50-5933        TCGA-50-5935        TCGA-50-5936 
"C7ORF58 WILD-TYPE"   "C7ORF58 MUTATED" "C7ORF58 WILD-TYPE" "C7ORF58 WILD-TYPE" 
       TCGA-50-5939        TCGA-50-5941        TCGA-50-5942        TCGA-50-5944 
"C7ORF58 WILD-TYPE" "C7ORF58 WILD-TYPE" "C7ORF58 WILD-TYPE" "C7ORF58 WILD-TYPE" 
       TCGA-50-5946        TCGA-50-6590        TCGA-50-6591        TCGA-50-6592 
"C7ORF58 WILD-TYPE" "C7ORF58 WILD-TYPE" "C7ORF58 WILD-TYPE" "C7ORF58 WILD-TYPE" 
       TCGA-50-6593        TCGA-50-6594        TCGA-50-6595        TCGA-50-6597 
  "C7ORF58 MUTATED" "C7ORF58 WILD-TYPE" "C7ORF58 WILD-TYPE" "C7ORF58 WILD-TYPE" 
       TCGA-55-1592        TCGA-55-1594        TCGA-55-1595        TCGA-55-1596 
"C7ORF58 WILD-TYPE" "C7ORF58 WILD-TYPE" "C7ORF58 WILD-TYPE" "C7ORF58 WILD-TYPE" 
       TCGA-55-5899        TCGA-55-6543        TCGA-55-6642        TCGA-55-6712 
"C7ORF58 WILD-TYPE" "C7ORF58 WILD-TYPE" "C7ORF58 WILD-TYPE" "C7ORF58 WILD-TYPE" 
       TCGA-64-1676        TCGA-64-1677        TCGA-64-1678        TCGA-64-1680 
"C7ORF58 WILD-TYPE" "C7ORF58 WILD-TYPE" "C7ORF58 WILD-TYPE" "C7ORF58 WILD-TYPE" 
       TCGA-64-5774        TCGA-64-5775        TCGA-64-5778        TCGA-64-5779 
"C7ORF58 WILD-TYPE" "C7ORF58 WILD-TYPE"   "C7ORF58 MUTATED" "C7ORF58 WILD-TYPE" 
       TCGA-64-5781        TCGA-64-5815        TCGA-67-3770        TCGA-67-3771 
  "C7ORF58 MUTATED"   "C7ORF58 MUTATED" "C7ORF58 WILD-TYPE" "C7ORF58 WILD-TYPE" 
       TCGA-67-3772        TCGA-67-3773        TCGA-67-3774        TCGA-67-6215 
"C7ORF58 WILD-TYPE" "C7ORF58 WILD-TYPE" "C7ORF58 WILD-TYPE" "C7ORF58 WILD-TYPE" 
       TCGA-67-6216        TCGA-67-6217        TCGA-71-6725        TCGA-73-4658 
"C7ORF58 WILD-TYPE" "C7ORF58 WILD-TYPE" "C7ORF58 WILD-TYPE" "C7ORF58 WILD-TYPE" 
       TCGA-73-4659        TCGA-73-4662        TCGA-73-4666        TCGA-73-4668 
"C7ORF58 WILD-TYPE" "C7ORF58 WILD-TYPE" "C7ORF58 WILD-TYPE"   "C7ORF58 MUTATED" 
       TCGA-73-4670        TCGA-73-4675        TCGA-73-4676        TCGA-73-4677 
"C7ORF58 WILD-TYPE" "C7ORF58 WILD-TYPE" "C7ORF58 WILD-TYPE" "C7ORF58 WILD-TYPE" 
       TCGA-91-6828        TCGA-91-6829        TCGA-91-6831        TCGA-91-6835 
"C7ORF58 WILD-TYPE" "C7ORF58 WILD-TYPE"   "C7ORF58 MUTATED" "C7ORF58 WILD-TYPE" 
       TCGA-91-6836 
"C7ORF58 WILD-TYPE" 
       TCGA-05-4249        TCGA-05-4250        TCGA-05-4382        TCGA-05-4384 
"C7ORF58 WILD-TYPE" "C7ORF58 WILD-TYPE" "C7ORF58 WILD-TYPE" "C7ORF58 WILD-TYPE" 
       TCGA-05-4390        TCGA-05-4396        TCGA-05-4397        TCGA-05-4398 
"C7ORF58 WILD-TYPE" "C7ORF58 WILD-TYPE" "C7ORF58 WILD-TYPE"   "C7ORF58 MUTATED" 
       TCGA-05-4402        TCGA-05-4405        TCGA-05-4415        TCGA-05-4417 
"C7ORF58 WILD-TYPE"   "C7ORF58 MUTATED" "C7ORF58 WILD-TYPE" "C7ORF58 WILD-TYPE" 
       TCGA-05-4418        TCGA-05-4420        TCGA-05-4424        TCGA-05-4426 
"C7ORF58 WILD-TYPE" "C7ORF58 WILD-TYPE" "C7ORF58 WILD-TYPE" "C7ORF58 WILD-TYPE" 
       TCGA-05-4427        TCGA-05-4430        TCGA-05-4432        TCGA-05-4433 
  "C7ORF58 MUTATED" "C7ORF58 WILD-TYPE" "C7ORF58 WILD-TYPE" "C7ORF58 WILD-TYPE" 
       TCGA-05-4434        TCGA-05-5420        TCGA-05-5423        TCGA-05-5425 
"C7ORF58 WILD-TYPE"   "C7ORF58 MUTATED" "C7ORF58 WILD-TYPE" "C7ORF58 WILD-TYPE" 
       TCGA-05-5429        TCGA-05-5715        TCGA-35-3615        TCGA-35-4122 
"C7ORF58 WILD-TYPE" "C7ORF58 WILD-TYPE" "C7ORF58 WILD-TYPE" "C7ORF58 WILD-TYPE" 
       TCGA-35-4123        TCGA-35-5375        TCGA-38-4625        TCGA-38-4626 
"C7ORF58 WILD-TYPE" "C7ORF58 WILD-TYPE" "C7ORF58 WILD-TYPE" "C7ORF58 WILD-TYPE" 
       TCGA-38-4627        TCGA-38-4628        TCGA-38-4629        TCGA-38-4630 
"C7ORF58 WILD-TYPE" "C7ORF58 WILD-TYPE" "C7ORF58 WILD-TYPE" "C7ORF58 WILD-TYPE" 
       TCGA-38-4631        TCGA-38-4632        TCGA-38-6178        TCGA-44-2655 
  "C7ORF58 MUTATED" "C7ORF58 WILD-TYPE" "C7ORF58 WILD-TYPE" "C7ORF58 WILD-TYPE" 
       TCGA-44-2656        TCGA-44-2657        TCGA-44-2659        TCGA-44-2661 
  "C7ORF58 MUTATED" "C7ORF58 WILD-TYPE" "C7ORF58 WILD-TYPE" "C7ORF58 WILD-TYPE" 
       TCGA-44-2662        TCGA-44-2665        TCGA-44-2666        TCGA-44-2668 
"C7ORF58 WILD-TYPE" "C7ORF58 WILD-TYPE" "C7ORF58 WILD-TYPE" "C7ORF58 WILD-TYPE" 
       TCGA-44-3396        TCGA-44-3398        TCGA-44-3918        TCGA-44-3919 
"C7ORF58 WILD-TYPE" "C7ORF58 WILD-TYPE" "C7ORF58 WILD-TYPE" "C7ORF58 WILD-TYPE" 
       TCGA-44-4112        TCGA-44-5643        TCGA-44-5645        TCGA-44-6144 
"C7ORF58 WILD-TYPE" "C7ORF58 WILD-TYPE" "C7ORF58 WILD-TYPE" "C7ORF58 WILD-TYPE" 
       TCGA-44-6145        TCGA-44-6146        TCGA-44-6147        TCGA-44-6148 
"C7ORF58 WILD-TYPE" "C7ORF58 WILD-TYPE" "C7ORF58 WILD-TYPE" "C7ORF58 WILD-TYPE" 
       TCGA-44-6774        TCGA-44-6775        TCGA-44-6776        TCGA-44-6777 
  "C7ORF58 MUTATED" "C7ORF58 WILD-TYPE" "C7ORF58 WILD-TYPE" "C7ORF58 WILD-TYPE" 
       TCGA-44-6778        TCGA-44-6779        TCGA-49-4486        TCGA-49-4487 
"C7ORF58 WILD-TYPE" "C7ORF58 WILD-TYPE" "C7ORF58 WILD-TYPE" "C7ORF58 WILD-TYPE" 
       TCGA-49-4488        TCGA-49-4490        TCGA-49-4494        TCGA-49-4501 
"C7ORF58 WILD-TYPE" "C7ORF58 WILD-TYPE" "C7ORF58 WILD-TYPE" "C7ORF58 WILD-TYPE" 
       TCGA-49-4505        TCGA-49-4506        TCGA-49-4507        TCGA-49-4510 
"C7ORF58 WILD-TYPE" "C7ORF58 WILD-TYPE"   "C7ORF58 MUTATED" "C7ORF58 WILD-TYPE" 
       TCGA-49-4512        TCGA-49-4514        TCGA-49-6742        TCGA-49-6743 
"C7ORF58 WILD-TYPE" "C7ORF58 WILD-TYPE" "C7ORF58 WILD-TYPE"   "C7ORF58 MUTATED" 
       TCGA-49-6744        TCGA-49-6745        TCGA-50-5044        TCGA-50-5045 
"C7ORF58 WILD-TYPE" "C7ORF58 WILD-TYPE" "C7ORF58 WILD-TYPE" "C7ORF58 WILD-TYPE" 
       TCGA-50-5049        TCGA-50-5051        TCGA-50-5055        TCGA-50-5066 
"C7ORF58 WILD-TYPE" "C7ORF58 WILD-TYPE" "C7ORF58 WILD-TYPE" "C7ORF58 WILD-TYPE" 
       TCGA-50-5068        TCGA-50-5072        TCGA-50-5930        TCGA-50-5931 
"C7ORF58 WILD-TYPE" "C7ORF58 WILD-TYPE" "C7ORF58 WILD-TYPE" "C7ORF58 WILD-TYPE" 
       TCGA-50-5932        TCGA-50-5933        TCGA-50-5935        TCGA-50-5936 
"C7ORF58 WILD-TYPE"   "C7ORF58 MUTATED" "C7ORF58 WILD-TYPE" "C7ORF58 WILD-TYPE" 
       TCGA-50-5939        TCGA-50-5941        TCGA-50-5942        TCGA-50-5944 
"C7ORF58 WILD-TYPE" "C7ORF58 WILD-TYPE" "C7ORF58 WILD-TYPE" "C7ORF58 WILD-TYPE" 
       TCGA-50-5946        TCGA-50-6590        TCGA-50-6591        TCGA-50-6592 
"C7ORF58 WILD-TYPE" "C7ORF58 WILD-TYPE" "C7ORF58 WILD-TYPE" "C7ORF58 WILD-TYPE" 
       TCGA-50-6593        TCGA-50-6594        TCGA-50-6595        TCGA-50-6597 
  "C7ORF58 MUTATED" "C7ORF58 WILD-TYPE" "C7ORF58 WILD-TYPE" "C7ORF58 WILD-TYPE" 
       TCGA-55-1592        TCGA-55-1594        TCGA-55-1595        TCGA-55-1596 
"C7ORF58 WILD-TYPE" "C7ORF58 WILD-TYPE" "C7ORF58 WILD-TYPE" "C7ORF58 WILD-TYPE" 
       TCGA-55-5899        TCGA-55-6543        TCGA-55-6642        TCGA-55-6712 
"C7ORF58 WILD-TYPE" "C7ORF58 WILD-TYPE" "C7ORF58 WILD-TYPE" "C7ORF58 WILD-TYPE" 
       TCGA-64-1676        TCGA-64-1677        TCGA-64-1678        TCGA-64-1680 
"C7ORF58 WILD-TYPE" "C7ORF58 WILD-TYPE" "C7ORF58 WILD-TYPE" "C7ORF58 WILD-TYPE" 
       TCGA-64-5774        TCGA-64-5775        TCGA-64-5778        TCGA-64-5779 
"C7ORF58 WILD-TYPE" "C7ORF58 WILD-TYPE"   "C7ORF58 MUTATED" "C7ORF58 WILD-TYPE" 
       TCGA-64-5781        TCGA-64-5815        TCGA-67-3770        TCGA-67-3771 
  "C7ORF58 MUTATED"   "C7ORF58 MUTATED" "C7ORF58 WILD-TYPE" "C7ORF58 WILD-TYPE" 
       TCGA-67-3772        TCGA-67-3773        TCGA-67-3774        TCGA-67-6215 
"C7ORF58 WILD-TYPE" "C7ORF58 WILD-TYPE" "C7ORF58 WILD-TYPE" "C7ORF58 WILD-TYPE" 
       TCGA-67-6216        TCGA-67-6217        TCGA-71-6725        TCGA-73-4658 
"C7ORF58 WILD-TYPE" "C7ORF58 WILD-TYPE" "C7ORF58 WILD-TYPE" "C7ORF58 WILD-TYPE" 
       TCGA-73-4659        TCGA-73-4662        TCGA-73-4666        TCGA-73-4668 
"C7ORF58 WILD-TYPE" "C7ORF58 WILD-TYPE" "C7ORF58 WILD-TYPE"   "C7ORF58 MUTATED" 
       TCGA-73-4670        TCGA-73-4675        TCGA-73-4676        TCGA-73-4677 
"C7ORF58 WILD-TYPE" "C7ORF58 WILD-TYPE" "C7ORF58 WILD-TYPE" "C7ORF58 WILD-TYPE" 
       TCGA-91-6828        TCGA-91-6829        TCGA-91-6831        TCGA-91-6835 
"C7ORF58 WILD-TYPE" "C7ORF58 WILD-TYPE"   "C7ORF58 MUTATED" "C7ORF58 WILD-TYPE" 
       TCGA-91-6836 
"C7ORF58 WILD-TYPE" 
[1] "hr=" "1.5"
D97V2, continuous
D97V3, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  C7ORF58 MUTATED     10    7
  C7ORF58 WILD-TYPE   83   72
        clus
vv       C7ORF58 MUTATED C7ORF58 WILD-TYPE
  FEMALE              10                83
  MALE                 7                72
D97V4, continuous
[1] "Remove cluster labels:" "C7ORF58 MUTATED"       
clus
  C7ORF58 MUTATED C7ORF58 WILD-TYPE 
                2                10 
       TCGA-35-4122        TCGA-35-4123        TCGA-35-5375        TCGA-64-1677 
"C7ORF58 WILD-TYPE" "C7ORF58 WILD-TYPE" "C7ORF58 WILD-TYPE" "C7ORF58 WILD-TYPE" 
       TCGA-71-6725        TCGA-73-4659        TCGA-73-4662        TCGA-73-4666 
"C7ORF58 WILD-TYPE" "C7ORF58 WILD-TYPE" "C7ORF58 WILD-TYPE" "C7ORF58 WILD-TYPE" 
       TCGA-73-4676        TCGA-75-5122 
"C7ORF58 WILD-TYPE" "C7ORF58 WILD-TYPE" 
D97V5, multiclass
D97V6, multiclass
    clus
vv   C7ORF58 MUTATED C7ORF58 WILD-TYPE
  T1               3                38
  T2              11                97
  T3               1                13
  T4               2                 6
D97V7, multiclass
       clus
vv      C7ORF58 MUTATED C7ORF58 WILD-TYPE
  N0                  7                88
  N1                  4                33
  N2+N3               6                29
D97V8, multiclass
    clus
vv   C7ORF58 MUTATED C7ORF58 WILD-TYPE
  M0              15               122
  M1               0                 9
  MX               2                20
D97V9, multiclass
     clus
vv    C7ORF58 MUTATED C7ORF58 WILD-TYPE
  I                 7                81
  II                3                30
  III               7                32
  IV                0                 9
D97V10, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  C7ORF58 MUTATED      2   15
  C7ORF58 WILD-TYPE   14  141
     clus
vv    C7ORF58 MUTATED C7ORF58 WILD-TYPE
  NO                2                14
  YES              15               141
D97V11, continuous
D97V12, continuous
D97V13, multiclass
                                             clus
vv                                            C7ORF58 MUTATED C7ORF58 WILD-TYPE
  CURRENT REFORMED SMOKER FOR < OR = 15 YEARS              12                50
  CURRENT REFORMED SMOKER FOR > 15 YEARS                    1                45
  CURRENT SMOKER                                            3                25
  LIFELONG NON-SMOKER                                       0                24
D97V14, continuous

Clustering(98) Variable = MAGEC2 MUTATION ANALYSIS
D98V1, survival
                  sevent
clus2               0  1
  MAGEC2 MUTATED    3  3
  MAGEC2 WILD-TYPE 96 47
  MAGEC2 MUTATED MAGEC2 WILD-TYPE 
               6              143 
  MAGEC2 MUTATED MAGEC2 WILD-TYPE 
               3               47 
$`MAGEC2 MUTATED`
TCGA-05-4396 TCGA-05-4427 TCGA-44-3918 TCGA-50-5045 TCGA-50-5051 TCGA-91-6829 
        9.96        26.01         6.44        71.47        14.96        41.33 

$`MAGEC2 WILD-TYPE`
TCGA-05-4249 TCGA-05-4250 TCGA-05-4382 TCGA-05-4384 TCGA-05-4390 TCGA-05-4397 
       38.07         3.98        19.92        14.01        37.02        24.03 
TCGA-05-4398 TCGA-05-4402 TCGA-05-4405 TCGA-05-4415 TCGA-05-4417 TCGA-05-4418 
       47.05         8.02        20.05         2.96        14.93         8.98 
TCGA-05-4420 TCGA-05-4424 TCGA-05-4426 TCGA-05-4430 TCGA-05-4432 TCGA-05-4433 
       29.95        30.02        26.01        25.02        25.02        24.00 
TCGA-05-4434 TCGA-05-5420 TCGA-05-5423 TCGA-05-5425 TCGA-05-5429 TCGA-05-5715 
       15.02         1.02         4.96         2.96         0.99         2.04 
TCGA-35-3615 TCGA-35-4122 TCGA-35-4123 TCGA-35-5375 TCGA-38-4625 TCGA-38-4626 
        0.46         7.36         5.95         8.68        47.61        85.32 
TCGA-38-4627 TCGA-38-4628 TCGA-38-4629 TCGA-38-4630 TCGA-38-4631 TCGA-38-4632 
       37.71        49.02        28.37        35.28        11.64        44.61 
TCGA-38-6178 TCGA-44-2655 TCGA-44-2656 TCGA-44-2657 TCGA-44-2659 TCGA-44-2661 
        5.19        18.87        19.10        13.15        17.39         3.39 
TCGA-44-2662 TCGA-44-2665 TCGA-44-2666 TCGA-44-2668 TCGA-44-3396 TCGA-44-3398 
       15.78        13.15         3.19         8.09        10.22         8.32 
TCGA-44-3919 TCGA-44-4112 TCGA-44-5643 TCGA-44-5645 TCGA-44-6144 TCGA-44-6145 
        6.21         4.60         3.48         6.84         0.30         3.35 
TCGA-44-6146 TCGA-44-6147 TCGA-44-6148 TCGA-44-6774 TCGA-44-6775 TCGA-44-6776 
        9.93         7.76         3.12         5.42         2.70        63.72 
TCGA-44-6777 TCGA-44-6778 TCGA-44-6779 TCGA-49-4486 TCGA-49-4487 TCGA-49-4488 
       32.45        36.49        16.41        76.21        28.11        28.57 
TCGA-49-4490 TCGA-49-4494 TCGA-49-4501 TCGA-49-4505 TCGA-49-4506 TCGA-49-4507 
       12.66        35.54        46.72        14.07        32.84         8.81 
TCGA-49-4510 TCGA-49-4512 TCGA-49-4514 TCGA-49-6742 TCGA-49-6743 TCGA-49-6744 
       29.46        29.75        43.20        15.02        12.13        12.99 
TCGA-49-6745 TCGA-50-5044 TCGA-50-5049 TCGA-50-5055 TCGA-50-5066 TCGA-50-5068 
        4.93        20.48        48.82        25.81         9.76        49.28 
TCGA-50-5072 TCGA-50-5930 TCGA-50-5931 TCGA-50-5932 TCGA-50-5933 TCGA-50-5935 
        8.05         9.27         8.78        35.87        77.88        21.47 
TCGA-50-5936 TCGA-50-5939 TCGA-50-5941 TCGA-50-5942 TCGA-50-5944 TCGA-50-5946 
        8.45        15.12         9.37         4.44        12.26        11.47 
TCGA-50-6590 TCGA-50-6591 TCGA-50-6592 TCGA-50-6593 TCGA-50-6594 TCGA-50-6595 
       42.31         3.88        25.51        11.05        12.16         6.21 
TCGA-50-6597 TCGA-55-1592 TCGA-55-1594 TCGA-55-1595 TCGA-55-1596 TCGA-55-5899 
       33.37        23.05        38.73        48.62        45.17         2.86 
TCGA-55-6543 TCGA-55-6642 TCGA-55-6712 TCGA-64-1676 TCGA-64-1677 TCGA-64-1678 
        0.07        32.61         0.79        56.81        20.65        39.09 
TCGA-64-1680 TCGA-64-5774 TCGA-64-5775 TCGA-64-5778 TCGA-64-5779 TCGA-64-5781 
       37.02        83.84         0.10        30.44        16.67        39.52 
TCGA-64-5815 TCGA-67-3770 TCGA-67-3771 TCGA-67-3772 TCGA-67-3773 TCGA-67-3774 
        7.33         0.99         1.97         0.59         2.04         0.59 
TCGA-67-6215 TCGA-67-6216 TCGA-67-6217 TCGA-71-6725 TCGA-73-4658 TCGA-73-4659 
        0.89         0.69        13.87         2.01        52.57        23.38 
TCGA-73-4662 TCGA-73-4666 TCGA-73-4668 TCGA-73-4670 TCGA-73-4675 TCGA-73-4676 
       29.95        20.28        15.35         0.46         1.32         4.01 
TCGA-73-4677 TCGA-91-6828 TCGA-91-6831 TCGA-91-6835 TCGA-91-6836 
        1.25         1.22         1.28         1.15         0.36 

  MAGEC2 MUTATED MAGEC2 WILD-TYPE 
            6.44             0.07 
  MAGEC2 MUTATED MAGEC2 WILD-TYPE 
           71.47            85.32 
  MAGEC2 MUTATED MAGEC2 WILD-TYPE 
          20.485           13.150 
[1] "6.4 - 71.5 (20.5)" "0.1 - 85.3 (13.2)"
      TCGA-05-4249       TCGA-05-4250       TCGA-05-4382       TCGA-05-4384 
"MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" 
      TCGA-05-4390       TCGA-05-4396       TCGA-05-4397       TCGA-05-4398 
"MAGEC2 WILD-TYPE"   "MAGEC2 MUTATED" "MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" 
      TCGA-05-4402       TCGA-05-4405       TCGA-05-4415       TCGA-05-4417 
"MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" 
      TCGA-05-4418       TCGA-05-4420       TCGA-05-4424       TCGA-05-4426 
"MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" 
      TCGA-05-4427       TCGA-05-4430       TCGA-05-4432       TCGA-05-4433 
  "MAGEC2 MUTATED" "MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" 
      TCGA-05-4434       TCGA-05-5420       TCGA-05-5423       TCGA-05-5425 
"MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" 
      TCGA-05-5429       TCGA-05-5715       TCGA-35-3615       TCGA-35-4122 
"MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" 
      TCGA-35-4123       TCGA-35-5375       TCGA-38-4625       TCGA-38-4626 
"MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" 
      TCGA-38-4627       TCGA-38-4628       TCGA-38-4629       TCGA-38-4630 
"MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" 
      TCGA-38-4631       TCGA-38-4632       TCGA-38-6178       TCGA-44-2655 
"MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" 
      TCGA-44-2656       TCGA-44-2657       TCGA-44-2659       TCGA-44-2661 
"MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" 
      TCGA-44-2662       TCGA-44-2665       TCGA-44-2666       TCGA-44-2668 
"MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" 
      TCGA-44-3396       TCGA-44-3398       TCGA-44-3918       TCGA-44-3919 
"MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE"   "MAGEC2 MUTATED" "MAGEC2 WILD-TYPE" 
      TCGA-44-4112       TCGA-44-5643       TCGA-44-5645       TCGA-44-6144 
"MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" 
      TCGA-44-6145       TCGA-44-6146       TCGA-44-6147       TCGA-44-6148 
"MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" 
      TCGA-44-6774       TCGA-44-6775       TCGA-44-6776       TCGA-44-6777 
"MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" 
      TCGA-44-6778       TCGA-44-6779       TCGA-49-4486       TCGA-49-4487 
"MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" 
      TCGA-49-4488       TCGA-49-4490       TCGA-49-4494       TCGA-49-4501 
"MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" 
      TCGA-49-4505       TCGA-49-4506       TCGA-49-4507       TCGA-49-4510 
"MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" 
      TCGA-49-4512       TCGA-49-4514       TCGA-49-6742       TCGA-49-6743 
"MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" 
      TCGA-49-6744       TCGA-49-6745       TCGA-50-5044       TCGA-50-5045 
"MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE"   "MAGEC2 MUTATED" 
      TCGA-50-5049       TCGA-50-5051       TCGA-50-5055       TCGA-50-5066 
"MAGEC2 WILD-TYPE"   "MAGEC2 MUTATED" "MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" 
      TCGA-50-5068       TCGA-50-5072       TCGA-50-5930       TCGA-50-5931 
"MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" 
      TCGA-50-5932       TCGA-50-5933       TCGA-50-5935       TCGA-50-5936 
"MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" 
      TCGA-50-5939       TCGA-50-5941       TCGA-50-5942       TCGA-50-5944 
"MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" 
      TCGA-50-5946       TCGA-50-6590       TCGA-50-6591       TCGA-50-6592 
"MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" 
      TCGA-50-6593       TCGA-50-6594       TCGA-50-6595       TCGA-50-6597 
"MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" 
      TCGA-55-1592       TCGA-55-1594       TCGA-55-1595       TCGA-55-1596 
"MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" 
      TCGA-55-5899       TCGA-55-6543       TCGA-55-6642       TCGA-55-6712 
"MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" 
      TCGA-64-1676       TCGA-64-1677       TCGA-64-1678       TCGA-64-1680 
"MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" 
      TCGA-64-5774       TCGA-64-5775       TCGA-64-5778       TCGA-64-5779 
"MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" 
      TCGA-64-5781       TCGA-64-5815       TCGA-67-3770       TCGA-67-3771 
"MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" 
      TCGA-67-3772       TCGA-67-3773       TCGA-67-3774       TCGA-67-6215 
"MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" 
      TCGA-67-6216       TCGA-67-6217       TCGA-71-6725       TCGA-73-4658 
"MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" 
      TCGA-73-4659       TCGA-73-4662       TCGA-73-4666       TCGA-73-4668 
"MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" 
      TCGA-73-4670       TCGA-73-4675       TCGA-73-4676       TCGA-73-4677 
"MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" 
      TCGA-91-6828       TCGA-91-6829       TCGA-91-6831       TCGA-91-6835 
"MAGEC2 WILD-TYPE"   "MAGEC2 MUTATED" "MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" 
      TCGA-91-6836 
"MAGEC2 WILD-TYPE" 
      TCGA-05-4249       TCGA-05-4250       TCGA-05-4382       TCGA-05-4384 
"MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" 
      TCGA-05-4390       TCGA-05-4396       TCGA-05-4397       TCGA-05-4398 
"MAGEC2 WILD-TYPE"   "MAGEC2 MUTATED" "MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" 
      TCGA-05-4402       TCGA-05-4405       TCGA-05-4415       TCGA-05-4417 
"MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" 
      TCGA-05-4418       TCGA-05-4420       TCGA-05-4424       TCGA-05-4426 
"MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" 
      TCGA-05-4427       TCGA-05-4430       TCGA-05-4432       TCGA-05-4433 
  "MAGEC2 MUTATED" "MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" 
      TCGA-05-4434       TCGA-05-5420       TCGA-05-5423       TCGA-05-5425 
"MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" 
      TCGA-05-5429       TCGA-05-5715       TCGA-35-3615       TCGA-35-4122 
"MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" 
      TCGA-35-4123       TCGA-35-5375       TCGA-38-4625       TCGA-38-4626 
"MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" 
      TCGA-38-4627       TCGA-38-4628       TCGA-38-4629       TCGA-38-4630 
"MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" 
      TCGA-38-4631       TCGA-38-4632       TCGA-38-6178       TCGA-44-2655 
"MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" 
      TCGA-44-2656       TCGA-44-2657       TCGA-44-2659       TCGA-44-2661 
"MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" 
      TCGA-44-2662       TCGA-44-2665       TCGA-44-2666       TCGA-44-2668 
"MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" 
      TCGA-44-3396       TCGA-44-3398       TCGA-44-3918       TCGA-44-3919 
"MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE"   "MAGEC2 MUTATED" "MAGEC2 WILD-TYPE" 
      TCGA-44-4112       TCGA-44-5643       TCGA-44-5645       TCGA-44-6144 
"MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" 
      TCGA-44-6145       TCGA-44-6146       TCGA-44-6147       TCGA-44-6148 
"MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" 
      TCGA-44-6774       TCGA-44-6775       TCGA-44-6776       TCGA-44-6777 
"MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" 
      TCGA-44-6778       TCGA-44-6779       TCGA-49-4486       TCGA-49-4487 
"MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" 
      TCGA-49-4488       TCGA-49-4490       TCGA-49-4494       TCGA-49-4501 
"MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" 
      TCGA-49-4505       TCGA-49-4506       TCGA-49-4507       TCGA-49-4510 
"MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" 
      TCGA-49-4512       TCGA-49-4514       TCGA-49-6742       TCGA-49-6743 
"MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" 
      TCGA-49-6744       TCGA-49-6745       TCGA-50-5044       TCGA-50-5045 
"MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE"   "MAGEC2 MUTATED" 
      TCGA-50-5049       TCGA-50-5051       TCGA-50-5055       TCGA-50-5066 
"MAGEC2 WILD-TYPE"   "MAGEC2 MUTATED" "MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" 
      TCGA-50-5068       TCGA-50-5072       TCGA-50-5930       TCGA-50-5931 
"MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" 
      TCGA-50-5932       TCGA-50-5933       TCGA-50-5935       TCGA-50-5936 
"MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" 
      TCGA-50-5939       TCGA-50-5941       TCGA-50-5942       TCGA-50-5944 
"MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" 
      TCGA-50-5946       TCGA-50-6590       TCGA-50-6591       TCGA-50-6592 
"MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" 
      TCGA-50-6593       TCGA-50-6594       TCGA-50-6595       TCGA-50-6597 
"MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" 
      TCGA-55-1592       TCGA-55-1594       TCGA-55-1595       TCGA-55-1596 
"MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" 
      TCGA-55-5899       TCGA-55-6543       TCGA-55-6642       TCGA-55-6712 
"MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" 
      TCGA-64-1676       TCGA-64-1677       TCGA-64-1678       TCGA-64-1680 
"MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" 
      TCGA-64-5774       TCGA-64-5775       TCGA-64-5778       TCGA-64-5779 
"MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" 
      TCGA-64-5781       TCGA-64-5815       TCGA-67-3770       TCGA-67-3771 
"MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" 
      TCGA-67-3772       TCGA-67-3773       TCGA-67-3774       TCGA-67-6215 
"MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" 
      TCGA-67-6216       TCGA-67-6217       TCGA-71-6725       TCGA-73-4658 
"MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" 
      TCGA-73-4659       TCGA-73-4662       TCGA-73-4666       TCGA-73-4668 
"MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" 
      TCGA-73-4670       TCGA-73-4675       TCGA-73-4676       TCGA-73-4677 
"MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" 
      TCGA-91-6828       TCGA-91-6829       TCGA-91-6831       TCGA-91-6835 
"MAGEC2 WILD-TYPE"   "MAGEC2 MUTATED" "MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" 
      TCGA-91-6836 
"MAGEC2 WILD-TYPE" 
      TCGA-05-4249       TCGA-05-4250       TCGA-05-4382       TCGA-05-4384 
"MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" 
      TCGA-05-4390       TCGA-05-4396       TCGA-05-4397       TCGA-05-4398 
"MAGEC2 WILD-TYPE"   "MAGEC2 MUTATED" "MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" 
      TCGA-05-4402       TCGA-05-4405       TCGA-05-4415       TCGA-05-4417 
"MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" 
      TCGA-05-4418       TCGA-05-4420       TCGA-05-4424       TCGA-05-4426 
"MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" 
      TCGA-05-4427       TCGA-05-4430       TCGA-05-4432       TCGA-05-4433 
  "MAGEC2 MUTATED" "MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" 
      TCGA-05-4434       TCGA-05-5420       TCGA-05-5423       TCGA-05-5425 
"MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" 
      TCGA-05-5429       TCGA-05-5715       TCGA-35-3615       TCGA-35-4122 
"MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" 
      TCGA-35-4123       TCGA-35-5375       TCGA-38-4625       TCGA-38-4626 
"MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" 
      TCGA-38-4627       TCGA-38-4628       TCGA-38-4629       TCGA-38-4630 
"MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" 
      TCGA-38-4631       TCGA-38-4632       TCGA-38-6178       TCGA-44-2655 
"MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" 
      TCGA-44-2656       TCGA-44-2657       TCGA-44-2659       TCGA-44-2661 
"MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" 
      TCGA-44-2662       TCGA-44-2665       TCGA-44-2666       TCGA-44-2668 
"MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" 
      TCGA-44-3396       TCGA-44-3398       TCGA-44-3918       TCGA-44-3919 
"MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE"   "MAGEC2 MUTATED" "MAGEC2 WILD-TYPE" 
      TCGA-44-4112       TCGA-44-5643       TCGA-44-5645       TCGA-44-6144 
"MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" 
      TCGA-44-6145       TCGA-44-6146       TCGA-44-6147       TCGA-44-6148 
"MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" 
      TCGA-44-6774       TCGA-44-6775       TCGA-44-6776       TCGA-44-6777 
"MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" 
      TCGA-44-6778       TCGA-44-6779       TCGA-49-4486       TCGA-49-4487 
"MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" 
      TCGA-49-4488       TCGA-49-4490       TCGA-49-4494       TCGA-49-4501 
"MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" 
      TCGA-49-4505       TCGA-49-4506       TCGA-49-4507       TCGA-49-4510 
"MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" 
      TCGA-49-4512       TCGA-49-4514       TCGA-49-6742       TCGA-49-6743 
"MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" 
      TCGA-49-6744       TCGA-49-6745       TCGA-50-5044       TCGA-50-5045 
"MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE"   "MAGEC2 MUTATED" 
      TCGA-50-5049       TCGA-50-5051       TCGA-50-5055       TCGA-50-5066 
"MAGEC2 WILD-TYPE"   "MAGEC2 MUTATED" "MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" 
      TCGA-50-5068       TCGA-50-5072       TCGA-50-5930       TCGA-50-5931 
"MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" 
      TCGA-50-5932       TCGA-50-5933       TCGA-50-5935       TCGA-50-5936 
"MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" 
      TCGA-50-5939       TCGA-50-5941       TCGA-50-5942       TCGA-50-5944 
"MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" 
      TCGA-50-5946       TCGA-50-6590       TCGA-50-6591       TCGA-50-6592 
"MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" 
      TCGA-50-6593       TCGA-50-6594       TCGA-50-6595       TCGA-50-6597 
"MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" 
      TCGA-55-1592       TCGA-55-1594       TCGA-55-1595       TCGA-55-1596 
"MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" 
      TCGA-55-5899       TCGA-55-6543       TCGA-55-6642       TCGA-55-6712 
"MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" 
      TCGA-64-1676       TCGA-64-1677       TCGA-64-1678       TCGA-64-1680 
"MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" 
      TCGA-64-5774       TCGA-64-5775       TCGA-64-5778       TCGA-64-5779 
"MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" 
      TCGA-64-5781       TCGA-64-5815       TCGA-67-3770       TCGA-67-3771 
"MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" 
      TCGA-67-3772       TCGA-67-3773       TCGA-67-3774       TCGA-67-6215 
"MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" 
      TCGA-67-6216       TCGA-67-6217       TCGA-71-6725       TCGA-73-4658 
"MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" 
      TCGA-73-4659       TCGA-73-4662       TCGA-73-4666       TCGA-73-4668 
"MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" 
      TCGA-73-4670       TCGA-73-4675       TCGA-73-4676       TCGA-73-4677 
"MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" 
      TCGA-91-6828       TCGA-91-6829       TCGA-91-6831       TCGA-91-6835 
"MAGEC2 WILD-TYPE"   "MAGEC2 MUTATED" "MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" 
      TCGA-91-6836 
"MAGEC2 WILD-TYPE" 
[1] "hr=" "1"  
D98V2, continuous
D98V3, binary
[1] "tbl2"
                  cls
clus               [,1] [,2]
  MAGEC2 MUTATED      5    3
  MAGEC2 WILD-TYPE   88   76
        clus
vv       MAGEC2 MUTATED MAGEC2 WILD-TYPE
  FEMALE              5               88
  MALE                3               76
D98V4, continuous
D98V5, multiclass
D98V6, multiclass
    clus
vv   MAGEC2 MUTATED MAGEC2 WILD-TYPE
  T1              1               40
  T2              5              103
  T3              1               13
  T4              1                7
D98V7, multiclass
       clus
vv      MAGEC2 MUTATED MAGEC2 WILD-TYPE
  N0                 3               92
  N1                 4               33
  N2+N3              1               34
D98V8, multiclass
    clus
vv   MAGEC2 MUTATED MAGEC2 WILD-TYPE
  M0              6              131
  M1              0                9
  MX              2               20
D98V9, multiclass
     clus
vv    MAGEC2 MUTATED MAGEC2 WILD-TYPE
  I                3               85
  II               3               30
  III              2               37
  IV               0                9
D98V10, binary
[1] "tbl2"
                  cls
clus               [,1] [,2]
  MAGEC2 MUTATED      2    6
  MAGEC2 WILD-TYPE   14  150
     clus
vv    MAGEC2 MUTATED MAGEC2 WILD-TYPE
  NO               2               14
  YES              6              150
D98V11, continuous
D98V12, continuous
D98V13, multiclass
                                             clus
vv                                            MAGEC2 MUTATED MAGEC2 WILD-TYPE
  CURRENT REFORMED SMOKER FOR < OR = 15 YEARS              3               59
  CURRENT REFORMED SMOKER FOR > 15 YEARS                   3               43
  CURRENT SMOKER                                           1               27
  LIFELONG NON-SMOKER                                      0               24
D98V14, continuous

Clustering(99) Variable = PYHIN1 MUTATION ANALYSIS
D99V1, survival
                  sevent
clus2               0  1
  PYHIN1 MUTATED    2  3
  PYHIN1 WILD-TYPE 97 47
  PYHIN1 MUTATED PYHIN1 WILD-TYPE 
               5              144 
  PYHIN1 MUTATED PYHIN1 WILD-TYPE 
               3               47 
$`PYHIN1 MUTATED`
TCGA-05-4397 TCGA-38-4626 TCGA-64-5781 TCGA-73-4677 TCGA-91-6829 
       24.03        85.32        39.52         1.25        41.33 

$`PYHIN1 WILD-TYPE`
TCGA-05-4249 TCGA-05-4250 TCGA-05-4382 TCGA-05-4384 TCGA-05-4390 TCGA-05-4396 
       38.07         3.98        19.92        14.01        37.02         9.96 
TCGA-05-4398 TCGA-05-4402 TCGA-05-4405 TCGA-05-4415 TCGA-05-4417 TCGA-05-4418 
       47.05         8.02        20.05         2.96        14.93         8.98 
TCGA-05-4420 TCGA-05-4424 TCGA-05-4426 TCGA-05-4427 TCGA-05-4430 TCGA-05-4432 
       29.95        30.02        26.01        26.01        25.02        25.02 
TCGA-05-4433 TCGA-05-4434 TCGA-05-5420 TCGA-05-5423 TCGA-05-5425 TCGA-05-5429 
       24.00        15.02         1.02         4.96         2.96         0.99 
TCGA-05-5715 TCGA-35-3615 TCGA-35-4122 TCGA-35-4123 TCGA-35-5375 TCGA-38-4625 
        2.04         0.46         7.36         5.95         8.68        47.61 
TCGA-38-4627 TCGA-38-4628 TCGA-38-4629 TCGA-38-4630 TCGA-38-4631 TCGA-38-4632 
       37.71        49.02        28.37        35.28        11.64        44.61 
TCGA-38-6178 TCGA-44-2655 TCGA-44-2656 TCGA-44-2657 TCGA-44-2659 TCGA-44-2661 
        5.19        18.87        19.10        13.15        17.39         3.39 
TCGA-44-2662 TCGA-44-2665 TCGA-44-2666 TCGA-44-2668 TCGA-44-3396 TCGA-44-3398 
       15.78        13.15         3.19         8.09        10.22         8.32 
TCGA-44-3918 TCGA-44-3919 TCGA-44-4112 TCGA-44-5643 TCGA-44-5645 TCGA-44-6144 
        6.44         6.21         4.60         3.48         6.84         0.30 
TCGA-44-6145 TCGA-44-6146 TCGA-44-6147 TCGA-44-6148 TCGA-44-6774 TCGA-44-6775 
        3.35         9.93         7.76         3.12         5.42         2.70 
TCGA-44-6776 TCGA-44-6777 TCGA-44-6778 TCGA-44-6779 TCGA-49-4486 TCGA-49-4487 
       63.72        32.45        36.49        16.41        76.21        28.11 
TCGA-49-4488 TCGA-49-4490 TCGA-49-4494 TCGA-49-4501 TCGA-49-4505 TCGA-49-4506 
       28.57        12.66        35.54        46.72        14.07        32.84 
TCGA-49-4507 TCGA-49-4510 TCGA-49-4512 TCGA-49-4514 TCGA-49-6742 TCGA-49-6743 
        8.81        29.46        29.75        43.20        15.02        12.13 
TCGA-49-6744 TCGA-49-6745 TCGA-50-5044 TCGA-50-5045 TCGA-50-5049 TCGA-50-5051 
       12.99         4.93        20.48        71.47        48.82        14.96 
TCGA-50-5055 TCGA-50-5066 TCGA-50-5068 TCGA-50-5072 TCGA-50-5930 TCGA-50-5931 
       25.81         9.76        49.28         8.05         9.27         8.78 
TCGA-50-5932 TCGA-50-5933 TCGA-50-5935 TCGA-50-5936 TCGA-50-5939 TCGA-50-5941 
       35.87        77.88        21.47         8.45        15.12         9.37 
TCGA-50-5942 TCGA-50-5944 TCGA-50-5946 TCGA-50-6590 TCGA-50-6591 TCGA-50-6592 
        4.44        12.26        11.47        42.31         3.88        25.51 
TCGA-50-6593 TCGA-50-6594 TCGA-50-6595 TCGA-50-6597 TCGA-55-1592 TCGA-55-1594 
       11.05        12.16         6.21        33.37        23.05        38.73 
TCGA-55-1595 TCGA-55-1596 TCGA-55-5899 TCGA-55-6543 TCGA-55-6642 TCGA-55-6712 
       48.62        45.17         2.86         0.07        32.61         0.79 
TCGA-64-1676 TCGA-64-1677 TCGA-64-1678 TCGA-64-1680 TCGA-64-5774 TCGA-64-5775 
       56.81        20.65        39.09        37.02        83.84         0.10 
TCGA-64-5778 TCGA-64-5779 TCGA-64-5815 TCGA-67-3770 TCGA-67-3771 TCGA-67-3772 
       30.44        16.67         7.33         0.99         1.97         0.59 
TCGA-67-3773 TCGA-67-3774 TCGA-67-6215 TCGA-67-6216 TCGA-67-6217 TCGA-71-6725 
        2.04         0.59         0.89         0.69        13.87         2.01 
TCGA-73-4658 TCGA-73-4659 TCGA-73-4662 TCGA-73-4666 TCGA-73-4668 TCGA-73-4670 
       52.57        23.38        29.95        20.28        15.35         0.46 
TCGA-73-4675 TCGA-73-4676 TCGA-91-6828 TCGA-91-6831 TCGA-91-6835 TCGA-91-6836 
        1.32         4.01         1.22         1.28         1.15         0.36 

  PYHIN1 MUTATED PYHIN1 WILD-TYPE 
            1.25             0.07 
  PYHIN1 MUTATED PYHIN1 WILD-TYPE 
           85.32            83.84 
  PYHIN1 MUTATED PYHIN1 WILD-TYPE 
           39.52            13.15 
[1] "1.2 - 85.3 (39.5)" "0.1 - 83.8 (13.2)"
      TCGA-05-4249       TCGA-05-4250       TCGA-05-4382       TCGA-05-4384 
"PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" 
      TCGA-05-4390       TCGA-05-4396       TCGA-05-4397       TCGA-05-4398 
"PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE"   "PYHIN1 MUTATED" "PYHIN1 WILD-TYPE" 
      TCGA-05-4402       TCGA-05-4405       TCGA-05-4415       TCGA-05-4417 
"PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" 
      TCGA-05-4418       TCGA-05-4420       TCGA-05-4424       TCGA-05-4426 
"PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" 
      TCGA-05-4427       TCGA-05-4430       TCGA-05-4432       TCGA-05-4433 
"PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" 
      TCGA-05-4434       TCGA-05-5420       TCGA-05-5423       TCGA-05-5425 
"PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" 
      TCGA-05-5429       TCGA-05-5715       TCGA-35-3615       TCGA-35-4122 
"PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" 
      TCGA-35-4123       TCGA-35-5375       TCGA-38-4625       TCGA-38-4626 
"PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE"   "PYHIN1 MUTATED" 
      TCGA-38-4627       TCGA-38-4628       TCGA-38-4629       TCGA-38-4630 
"PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" 
      TCGA-38-4631       TCGA-38-4632       TCGA-38-6178       TCGA-44-2655 
"PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" 
      TCGA-44-2656       TCGA-44-2657       TCGA-44-2659       TCGA-44-2661 
"PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" 
      TCGA-44-2662       TCGA-44-2665       TCGA-44-2666       TCGA-44-2668 
"PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" 
      TCGA-44-3396       TCGA-44-3398       TCGA-44-3918       TCGA-44-3919 
"PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" 
      TCGA-44-4112       TCGA-44-5643       TCGA-44-5645       TCGA-44-6144 
"PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" 
      TCGA-44-6145       TCGA-44-6146       TCGA-44-6147       TCGA-44-6148 
"PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" 
      TCGA-44-6774       TCGA-44-6775       TCGA-44-6776       TCGA-44-6777 
"PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" 
      TCGA-44-6778       TCGA-44-6779       TCGA-49-4486       TCGA-49-4487 
"PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" 
      TCGA-49-4488       TCGA-49-4490       TCGA-49-4494       TCGA-49-4501 
"PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" 
      TCGA-49-4505       TCGA-49-4506       TCGA-49-4507       TCGA-49-4510 
"PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" 
      TCGA-49-4512       TCGA-49-4514       TCGA-49-6742       TCGA-49-6743 
"PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" 
      TCGA-49-6744       TCGA-49-6745       TCGA-50-5044       TCGA-50-5045 
"PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" 
      TCGA-50-5049       TCGA-50-5051       TCGA-50-5055       TCGA-50-5066 
"PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" 
      TCGA-50-5068       TCGA-50-5072       TCGA-50-5930       TCGA-50-5931 
"PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" 
      TCGA-50-5932       TCGA-50-5933       TCGA-50-5935       TCGA-50-5936 
"PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" 
      TCGA-50-5939       TCGA-50-5941       TCGA-50-5942       TCGA-50-5944 
"PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" 
      TCGA-50-5946       TCGA-50-6590       TCGA-50-6591       TCGA-50-6592 
"PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" 
      TCGA-50-6593       TCGA-50-6594       TCGA-50-6595       TCGA-50-6597 
"PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" 
      TCGA-55-1592       TCGA-55-1594       TCGA-55-1595       TCGA-55-1596 
"PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" 
      TCGA-55-5899       TCGA-55-6543       TCGA-55-6642       TCGA-55-6712 
"PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" 
      TCGA-64-1676       TCGA-64-1677       TCGA-64-1678       TCGA-64-1680 
"PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" 
      TCGA-64-5774       TCGA-64-5775       TCGA-64-5778       TCGA-64-5779 
"PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" 
      TCGA-64-5781       TCGA-64-5815       TCGA-67-3770       TCGA-67-3771 
  "PYHIN1 MUTATED" "PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" 
      TCGA-67-3772       TCGA-67-3773       TCGA-67-3774       TCGA-67-6215 
"PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" 
      TCGA-67-6216       TCGA-67-6217       TCGA-71-6725       TCGA-73-4658 
"PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" 
      TCGA-73-4659       TCGA-73-4662       TCGA-73-4666       TCGA-73-4668 
"PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" 
      TCGA-73-4670       TCGA-73-4675       TCGA-73-4676       TCGA-73-4677 
"PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE"   "PYHIN1 MUTATED" 
      TCGA-91-6828       TCGA-91-6829       TCGA-91-6831       TCGA-91-6835 
"PYHIN1 WILD-TYPE"   "PYHIN1 MUTATED" "PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" 
      TCGA-91-6836 
"PYHIN1 WILD-TYPE" 
      TCGA-05-4249       TCGA-05-4250       TCGA-05-4382       TCGA-05-4384 
"PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" 
      TCGA-05-4390       TCGA-05-4396       TCGA-05-4397       TCGA-05-4398 
"PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE"   "PYHIN1 MUTATED" "PYHIN1 WILD-TYPE" 
      TCGA-05-4402       TCGA-05-4405       TCGA-05-4415       TCGA-05-4417 
"PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" 
      TCGA-05-4418       TCGA-05-4420       TCGA-05-4424       TCGA-05-4426 
"PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" 
      TCGA-05-4427       TCGA-05-4430       TCGA-05-4432       TCGA-05-4433 
"PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" 
      TCGA-05-4434       TCGA-05-5420       TCGA-05-5423       TCGA-05-5425 
"PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" 
      TCGA-05-5429       TCGA-05-5715       TCGA-35-3615       TCGA-35-4122 
"PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" 
      TCGA-35-4123       TCGA-35-5375       TCGA-38-4625       TCGA-38-4626 
"PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE"   "PYHIN1 MUTATED" 
      TCGA-38-4627       TCGA-38-4628       TCGA-38-4629       TCGA-38-4630 
"PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" 
      TCGA-38-4631       TCGA-38-4632       TCGA-38-6178       TCGA-44-2655 
"PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" 
      TCGA-44-2656       TCGA-44-2657       TCGA-44-2659       TCGA-44-2661 
"PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" 
      TCGA-44-2662       TCGA-44-2665       TCGA-44-2666       TCGA-44-2668 
"PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" 
      TCGA-44-3396       TCGA-44-3398       TCGA-44-3918       TCGA-44-3919 
"PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" 
      TCGA-44-4112       TCGA-44-5643       TCGA-44-5645       TCGA-44-6144 
"PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" 
      TCGA-44-6145       TCGA-44-6146       TCGA-44-6147       TCGA-44-6148 
"PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" 
      TCGA-44-6774       TCGA-44-6775       TCGA-44-6776       TCGA-44-6777 
"PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" 
      TCGA-44-6778       TCGA-44-6779       TCGA-49-4486       TCGA-49-4487 
"PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" 
      TCGA-49-4488       TCGA-49-4490       TCGA-49-4494       TCGA-49-4501 
"PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" 
      TCGA-49-4505       TCGA-49-4506       TCGA-49-4507       TCGA-49-4510 
"PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" 
      TCGA-49-4512       TCGA-49-4514       TCGA-49-6742       TCGA-49-6743 
"PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" 
      TCGA-49-6744       TCGA-49-6745       TCGA-50-5044       TCGA-50-5045 
"PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" 
      TCGA-50-5049       TCGA-50-5051       TCGA-50-5055       TCGA-50-5066 
"PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" 
      TCGA-50-5068       TCGA-50-5072       TCGA-50-5930       TCGA-50-5931 
"PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" 
      TCGA-50-5932       TCGA-50-5933       TCGA-50-5935       TCGA-50-5936 
"PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" 
      TCGA-50-5939       TCGA-50-5941       TCGA-50-5942       TCGA-50-5944 
"PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" 
      TCGA-50-5946       TCGA-50-6590       TCGA-50-6591       TCGA-50-6592 
"PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" 
      TCGA-50-6593       TCGA-50-6594       TCGA-50-6595       TCGA-50-6597 
"PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" 
      TCGA-55-1592       TCGA-55-1594       TCGA-55-1595       TCGA-55-1596 
"PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" 
      TCGA-55-5899       TCGA-55-6543       TCGA-55-6642       TCGA-55-6712 
"PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" 
      TCGA-64-1676       TCGA-64-1677       TCGA-64-1678       TCGA-64-1680 
"PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" 
      TCGA-64-5774       TCGA-64-5775       TCGA-64-5778       TCGA-64-5779 
"PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" 
      TCGA-64-5781       TCGA-64-5815       TCGA-67-3770       TCGA-67-3771 
  "PYHIN1 MUTATED" "PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" 
      TCGA-67-3772       TCGA-67-3773       TCGA-67-3774       TCGA-67-6215 
"PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" 
      TCGA-67-6216       TCGA-67-6217       TCGA-71-6725       TCGA-73-4658 
"PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" 
      TCGA-73-4659       TCGA-73-4662       TCGA-73-4666       TCGA-73-4668 
"PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" 
      TCGA-73-4670       TCGA-73-4675       TCGA-73-4676       TCGA-73-4677 
"PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE"   "PYHIN1 MUTATED" 
      TCGA-91-6828       TCGA-91-6829       TCGA-91-6831       TCGA-91-6835 
"PYHIN1 WILD-TYPE"   "PYHIN1 MUTATED" "PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" 
      TCGA-91-6836 
"PYHIN1 WILD-TYPE" 
      TCGA-05-4249       TCGA-05-4250       TCGA-05-4382       TCGA-05-4384 
"PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" 
      TCGA-05-4390       TCGA-05-4396       TCGA-05-4397       TCGA-05-4398 
"PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE"   "PYHIN1 MUTATED" "PYHIN1 WILD-TYPE" 
      TCGA-05-4402       TCGA-05-4405       TCGA-05-4415       TCGA-05-4417 
"PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" 
      TCGA-05-4418       TCGA-05-4420       TCGA-05-4424       TCGA-05-4426 
"PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" 
      TCGA-05-4427       TCGA-05-4430       TCGA-05-4432       TCGA-05-4433 
"PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" 
      TCGA-05-4434       TCGA-05-5420       TCGA-05-5423       TCGA-05-5425 
"PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" 
      TCGA-05-5429       TCGA-05-5715       TCGA-35-3615       TCGA-35-4122 
"PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" 
      TCGA-35-4123       TCGA-35-5375       TCGA-38-4625       TCGA-38-4626 
"PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE"   "PYHIN1 MUTATED" 
      TCGA-38-4627       TCGA-38-4628       TCGA-38-4629       TCGA-38-4630 
"PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" 
      TCGA-38-4631       TCGA-38-4632       TCGA-38-6178       TCGA-44-2655 
"PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" 
      TCGA-44-2656       TCGA-44-2657       TCGA-44-2659       TCGA-44-2661 
"PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" 
      TCGA-44-2662       TCGA-44-2665       TCGA-44-2666       TCGA-44-2668 
"PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" 
      TCGA-44-3396       TCGA-44-3398       TCGA-44-3918       TCGA-44-3919 
"PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" 
      TCGA-44-4112       TCGA-44-5643       TCGA-44-5645       TCGA-44-6144 
"PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" 
      TCGA-44-6145       TCGA-44-6146       TCGA-44-6147       TCGA-44-6148 
"PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" 
      TCGA-44-6774       TCGA-44-6775       TCGA-44-6776       TCGA-44-6777 
"PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" 
      TCGA-44-6778       TCGA-44-6779       TCGA-49-4486       TCGA-49-4487 
"PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" 
      TCGA-49-4488       TCGA-49-4490       TCGA-49-4494       TCGA-49-4501 
"PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" 
      TCGA-49-4505       TCGA-49-4506       TCGA-49-4507       TCGA-49-4510 
"PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" 
      TCGA-49-4512       TCGA-49-4514       TCGA-49-6742       TCGA-49-6743 
"PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" 
      TCGA-49-6744       TCGA-49-6745       TCGA-50-5044       TCGA-50-5045 
"PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" 
      TCGA-50-5049       TCGA-50-5051       TCGA-50-5055       TCGA-50-5066 
"PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" 
      TCGA-50-5068       TCGA-50-5072       TCGA-50-5930       TCGA-50-5931 
"PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" 
      TCGA-50-5932       TCGA-50-5933       TCGA-50-5935       TCGA-50-5936 
"PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" 
      TCGA-50-5939       TCGA-50-5941       TCGA-50-5942       TCGA-50-5944 
"PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" 
      TCGA-50-5946       TCGA-50-6590       TCGA-50-6591       TCGA-50-6592 
"PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" 
      TCGA-50-6593       TCGA-50-6594       TCGA-50-6595       TCGA-50-6597 
"PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" 
      TCGA-55-1592       TCGA-55-1594       TCGA-55-1595       TCGA-55-1596 
"PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" 
      TCGA-55-5899       TCGA-55-6543       TCGA-55-6642       TCGA-55-6712 
"PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" 
      TCGA-64-1676       TCGA-64-1677       TCGA-64-1678       TCGA-64-1680 
"PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" 
      TCGA-64-5774       TCGA-64-5775       TCGA-64-5778       TCGA-64-5779 
"PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" 
      TCGA-64-5781       TCGA-64-5815       TCGA-67-3770       TCGA-67-3771 
  "PYHIN1 MUTATED" "PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" 
      TCGA-67-3772       TCGA-67-3773       TCGA-67-3774       TCGA-67-6215 
"PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" 
      TCGA-67-6216       TCGA-67-6217       TCGA-71-6725       TCGA-73-4658 
"PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" 
      TCGA-73-4659       TCGA-73-4662       TCGA-73-4666       TCGA-73-4668 
"PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" 
      TCGA-73-4670       TCGA-73-4675       TCGA-73-4676       TCGA-73-4677 
"PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE"   "PYHIN1 MUTATED" 
      TCGA-91-6828       TCGA-91-6829       TCGA-91-6831       TCGA-91-6835 
"PYHIN1 WILD-TYPE"   "PYHIN1 MUTATED" "PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" 
      TCGA-91-6836 
"PYHIN1 WILD-TYPE" 
[1] "hr=" "1.3"
D99V2, continuous
D99V3, binary
[1] "tbl2"
                  cls
clus               [,1] [,2]
  PYHIN1 MUTATED      3    4
  PYHIN1 WILD-TYPE   90   75
        clus
vv       PYHIN1 MUTATED PYHIN1 WILD-TYPE
  FEMALE              3               90
  MALE                4               75
D99V4, continuous
D99V5, multiclass
D99V6, multiclass
    clus
vv   PYHIN1 MUTATED PYHIN1 WILD-TYPE
  T1              0               41
  T2              6              102
  T3              1               13
  T4              0                8
D99V7, multiclass
       clus
vv      PYHIN1 MUTATED PYHIN1 WILD-TYPE
  N0                 6               89
  N1                 1               36
  N2+N3              0               35
D99V8, multiclass
    clus
vv   PYHIN1 MUTATED PYHIN1 WILD-TYPE
  M0              5              132
  M1              0                9
  MX              2               20
D99V9, multiclass
     clus
vv    PYHIN1 MUTATED PYHIN1 WILD-TYPE
  I                4               84
  II               3               30
  III              0               39
  IV               0                9
D99V10, binary
[1] "tbl2"
                  cls
clus               [,1] [,2]
  PYHIN1 MUTATED      0    7
  PYHIN1 WILD-TYPE   16  149
     clus
vv    PYHIN1 MUTATED PYHIN1 WILD-TYPE
  NO               0               16
  YES              7              149
D99V11, continuous
D99V12, continuous
D99V13, multiclass
                                             clus
vv                                            PYHIN1 MUTATED PYHIN1 WILD-TYPE
  CURRENT REFORMED SMOKER FOR < OR = 15 YEARS              3               59
  CURRENT REFORMED SMOKER FOR > 15 YEARS                   1               45
  CURRENT SMOKER                                           3               25
  LIFELONG NON-SMOKER                                      0               24
D99V14, continuous

Clustering(100) Variable = PABPC3 MUTATION ANALYSIS
D100V1, survival
                  sevent
clus2               0  1
  PABPC3 MUTATED    7  0
  PABPC3 WILD-TYPE 92 50
  PABPC3 MUTATED PABPC3 WILD-TYPE 
               7              142 
  PABPC3 MUTATED PABPC3 WILD-TYPE 
               0               50 
$`PABPC3 MUTATED`
TCGA-05-4390 TCGA-05-4426 TCGA-05-4427 TCGA-44-6776 TCGA-67-3771 TCGA-67-6215 
       37.02        26.01        26.01        63.72         1.97         0.89 
TCGA-73-4666 
       20.28 

$`PABPC3 WILD-TYPE`
TCGA-05-4249 TCGA-05-4250 TCGA-05-4382 TCGA-05-4384 TCGA-05-4396 TCGA-05-4397 
       38.07         3.98        19.92        14.01         9.96        24.03 
TCGA-05-4398 TCGA-05-4402 TCGA-05-4405 TCGA-05-4415 TCGA-05-4417 TCGA-05-4418 
       47.05         8.02        20.05         2.96        14.93         8.98 
TCGA-05-4420 TCGA-05-4424 TCGA-05-4430 TCGA-05-4432 TCGA-05-4433 TCGA-05-4434 
       29.95        30.02        25.02        25.02        24.00        15.02 
TCGA-05-5420 TCGA-05-5423 TCGA-05-5425 TCGA-05-5429 TCGA-05-5715 TCGA-35-3615 
        1.02         4.96         2.96         0.99         2.04         0.46 
TCGA-35-4122 TCGA-35-4123 TCGA-35-5375 TCGA-38-4625 TCGA-38-4626 TCGA-38-4627 
        7.36         5.95         8.68        47.61        85.32        37.71 
TCGA-38-4628 TCGA-38-4629 TCGA-38-4630 TCGA-38-4631 TCGA-38-4632 TCGA-38-6178 
       49.02        28.37        35.28        11.64        44.61         5.19 
TCGA-44-2655 TCGA-44-2656 TCGA-44-2657 TCGA-44-2659 TCGA-44-2661 TCGA-44-2662 
       18.87        19.10        13.15        17.39         3.39        15.78 
TCGA-44-2665 TCGA-44-2666 TCGA-44-2668 TCGA-44-3396 TCGA-44-3398 TCGA-44-3918 
       13.15         3.19         8.09        10.22         8.32         6.44 
TCGA-44-3919 TCGA-44-4112 TCGA-44-5643 TCGA-44-5645 TCGA-44-6144 TCGA-44-6145 
        6.21         4.60         3.48         6.84         0.30         3.35 
TCGA-44-6146 TCGA-44-6147 TCGA-44-6148 TCGA-44-6774 TCGA-44-6775 TCGA-44-6777 
        9.93         7.76         3.12         5.42         2.70        32.45 
TCGA-44-6778 TCGA-44-6779 TCGA-49-4486 TCGA-49-4487 TCGA-49-4488 TCGA-49-4490 
       36.49        16.41        76.21        28.11        28.57        12.66 
TCGA-49-4494 TCGA-49-4501 TCGA-49-4505 TCGA-49-4506 TCGA-49-4507 TCGA-49-4510 
       35.54        46.72        14.07        32.84         8.81        29.46 
TCGA-49-4512 TCGA-49-4514 TCGA-49-6742 TCGA-49-6743 TCGA-49-6744 TCGA-49-6745 
       29.75        43.20        15.02        12.13        12.99         4.93 
TCGA-50-5044 TCGA-50-5045 TCGA-50-5049 TCGA-50-5051 TCGA-50-5055 TCGA-50-5066 
       20.48        71.47        48.82        14.96        25.81         9.76 
TCGA-50-5068 TCGA-50-5072 TCGA-50-5930 TCGA-50-5931 TCGA-50-5932 TCGA-50-5933 
       49.28         8.05         9.27         8.78        35.87        77.88 
TCGA-50-5935 TCGA-50-5936 TCGA-50-5939 TCGA-50-5941 TCGA-50-5942 TCGA-50-5944 
       21.47         8.45        15.12         9.37         4.44        12.26 
TCGA-50-5946 TCGA-50-6590 TCGA-50-6591 TCGA-50-6592 TCGA-50-6593 TCGA-50-6594 
       11.47        42.31         3.88        25.51        11.05        12.16 
TCGA-50-6595 TCGA-50-6597 TCGA-55-1592 TCGA-55-1594 TCGA-55-1595 TCGA-55-1596 
        6.21        33.37        23.05        38.73        48.62        45.17 
TCGA-55-5899 TCGA-55-6543 TCGA-55-6642 TCGA-55-6712 TCGA-64-1676 TCGA-64-1677 
        2.86         0.07        32.61         0.79        56.81        20.65 
TCGA-64-1678 TCGA-64-1680 TCGA-64-5774 TCGA-64-5775 TCGA-64-5778 TCGA-64-5779 
       39.09        37.02        83.84         0.10        30.44        16.67 
TCGA-64-5781 TCGA-64-5815 TCGA-67-3770 TCGA-67-3772 TCGA-67-3773 TCGA-67-3774 
       39.52         7.33         0.99         0.59         2.04         0.59 
TCGA-67-6216 TCGA-67-6217 TCGA-71-6725 TCGA-73-4658 TCGA-73-4659 TCGA-73-4662 
        0.69        13.87         2.01        52.57        23.38        29.95 
TCGA-73-4668 TCGA-73-4670 TCGA-73-4675 TCGA-73-4676 TCGA-73-4677 TCGA-91-6828 
       15.35         0.46         1.32         4.01         1.25         1.22 
TCGA-91-6829 TCGA-91-6831 TCGA-91-6835 TCGA-91-6836 
       41.33         1.28         1.15         0.36 

  PABPC3 MUTATED PABPC3 WILD-TYPE 
            0.89             0.07 
  PABPC3 MUTATED PABPC3 WILD-TYPE 
           63.72            85.32 
  PABPC3 MUTATED PABPC3 WILD-TYPE 
           26.01            13.15 
[1] "0.9 - 63.7 (26.0)" "0.1 - 85.3 (13.2)"
      TCGA-05-4249       TCGA-05-4250       TCGA-05-4382       TCGA-05-4384 
"PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" 
      TCGA-05-4390       TCGA-05-4396       TCGA-05-4397       TCGA-05-4398 
  "PABPC3 MUTATED" "PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" 
      TCGA-05-4402       TCGA-05-4405       TCGA-05-4415       TCGA-05-4417 
"PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" 
      TCGA-05-4418       TCGA-05-4420       TCGA-05-4424       TCGA-05-4426 
"PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE"   "PABPC3 MUTATED" 
      TCGA-05-4427       TCGA-05-4430       TCGA-05-4432       TCGA-05-4433 
  "PABPC3 MUTATED" "PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" 
      TCGA-05-4434       TCGA-05-5420       TCGA-05-5423       TCGA-05-5425 
"PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" 
      TCGA-05-5429       TCGA-05-5715       TCGA-35-3615       TCGA-35-4122 
"PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" 
      TCGA-35-4123       TCGA-35-5375       TCGA-38-4625       TCGA-38-4626 
"PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" 
      TCGA-38-4627       TCGA-38-4628       TCGA-38-4629       TCGA-38-4630 
"PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" 
      TCGA-38-4631       TCGA-38-4632       TCGA-38-6178       TCGA-44-2655 
"PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" 
      TCGA-44-2656       TCGA-44-2657       TCGA-44-2659       TCGA-44-2661 
"PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" 
      TCGA-44-2662       TCGA-44-2665       TCGA-44-2666       TCGA-44-2668 
"PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" 
      TCGA-44-3396       TCGA-44-3398       TCGA-44-3918       TCGA-44-3919 
"PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" 
      TCGA-44-4112       TCGA-44-5643       TCGA-44-5645       TCGA-44-6144 
"PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" 
      TCGA-44-6145       TCGA-44-6146       TCGA-44-6147       TCGA-44-6148 
"PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" 
      TCGA-44-6774       TCGA-44-6775       TCGA-44-6776       TCGA-44-6777 
"PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE"   "PABPC3 MUTATED" "PABPC3 WILD-TYPE" 
      TCGA-44-6778       TCGA-44-6779       TCGA-49-4486       TCGA-49-4487 
"PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" 
      TCGA-49-4488       TCGA-49-4490       TCGA-49-4494       TCGA-49-4501 
"PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" 
      TCGA-49-4505       TCGA-49-4506       TCGA-49-4507       TCGA-49-4510 
"PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" 
      TCGA-49-4512       TCGA-49-4514       TCGA-49-6742       TCGA-49-6743 
"PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" 
      TCGA-49-6744       TCGA-49-6745       TCGA-50-5044       TCGA-50-5045 
"PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" 
      TCGA-50-5049       TCGA-50-5051       TCGA-50-5055       TCGA-50-5066 
"PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" 
      TCGA-50-5068       TCGA-50-5072       TCGA-50-5930       TCGA-50-5931 
"PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" 
      TCGA-50-5932       TCGA-50-5933       TCGA-50-5935       TCGA-50-5936 
"PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" 
      TCGA-50-5939       TCGA-50-5941       TCGA-50-5942       TCGA-50-5944 
"PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" 
      TCGA-50-5946       TCGA-50-6590       TCGA-50-6591       TCGA-50-6592 
"PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" 
      TCGA-50-6593       TCGA-50-6594       TCGA-50-6595       TCGA-50-6597 
"PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" 
      TCGA-55-1592       TCGA-55-1594       TCGA-55-1595       TCGA-55-1596 
"PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" 
      TCGA-55-5899       TCGA-55-6543       TCGA-55-6642       TCGA-55-6712 
"PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" 
      TCGA-64-1676       TCGA-64-1677       TCGA-64-1678       TCGA-64-1680 
"PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" 
      TCGA-64-5774       TCGA-64-5775       TCGA-64-5778       TCGA-64-5779 
"PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" 
      TCGA-64-5781       TCGA-64-5815       TCGA-67-3770       TCGA-67-3771 
"PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE"   "PABPC3 MUTATED" 
      TCGA-67-3772       TCGA-67-3773       TCGA-67-3774       TCGA-67-6215 
"PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE"   "PABPC3 MUTATED" 
      TCGA-67-6216       TCGA-67-6217       TCGA-71-6725       TCGA-73-4658 
"PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" 
      TCGA-73-4659       TCGA-73-4662       TCGA-73-4666       TCGA-73-4668 
"PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE"   "PABPC3 MUTATED" "PABPC3 WILD-TYPE" 
      TCGA-73-4670       TCGA-73-4675       TCGA-73-4676       TCGA-73-4677 
"PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" 
      TCGA-91-6828       TCGA-91-6829       TCGA-91-6831       TCGA-91-6835 
"PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" 
      TCGA-91-6836 
"PABPC3 WILD-TYPE" 
      TCGA-05-4249       TCGA-05-4250       TCGA-05-4382       TCGA-05-4384 
"PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" 
      TCGA-05-4390       TCGA-05-4396       TCGA-05-4397       TCGA-05-4398 
  "PABPC3 MUTATED" "PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" 
      TCGA-05-4402       TCGA-05-4405       TCGA-05-4415       TCGA-05-4417 
"PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" 
      TCGA-05-4418       TCGA-05-4420       TCGA-05-4424       TCGA-05-4426 
"PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE"   "PABPC3 MUTATED" 
      TCGA-05-4427       TCGA-05-4430       TCGA-05-4432       TCGA-05-4433 
  "PABPC3 MUTATED" "PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" 
      TCGA-05-4434       TCGA-05-5420       TCGA-05-5423       TCGA-05-5425 
"PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" 
      TCGA-05-5429       TCGA-05-5715       TCGA-35-3615       TCGA-35-4122 
"PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" 
      TCGA-35-4123       TCGA-35-5375       TCGA-38-4625       TCGA-38-4626 
"PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" 
      TCGA-38-4627       TCGA-38-4628       TCGA-38-4629       TCGA-38-4630 
"PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" 
      TCGA-38-4631       TCGA-38-4632       TCGA-38-6178       TCGA-44-2655 
"PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" 
      TCGA-44-2656       TCGA-44-2657       TCGA-44-2659       TCGA-44-2661 
"PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" 
      TCGA-44-2662       TCGA-44-2665       TCGA-44-2666       TCGA-44-2668 
"PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" 
      TCGA-44-3396       TCGA-44-3398       TCGA-44-3918       TCGA-44-3919 
"PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" 
      TCGA-44-4112       TCGA-44-5643       TCGA-44-5645       TCGA-44-6144 
"PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" 
      TCGA-44-6145       TCGA-44-6146       TCGA-44-6147       TCGA-44-6148 
"PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" 
      TCGA-44-6774       TCGA-44-6775       TCGA-44-6776       TCGA-44-6777 
"PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE"   "PABPC3 MUTATED" "PABPC3 WILD-TYPE" 
      TCGA-44-6778       TCGA-44-6779       TCGA-49-4486       TCGA-49-4487 
"PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" 
      TCGA-49-4488       TCGA-49-4490       TCGA-49-4494       TCGA-49-4501 
"PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" 
      TCGA-49-4505       TCGA-49-4506       TCGA-49-4507       TCGA-49-4510 
"PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" 
      TCGA-49-4512       TCGA-49-4514       TCGA-49-6742       TCGA-49-6743 
"PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" 
      TCGA-49-6744       TCGA-49-6745       TCGA-50-5044       TCGA-50-5045 
"PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" 
      TCGA-50-5049       TCGA-50-5051       TCGA-50-5055       TCGA-50-5066 
"PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" 
      TCGA-50-5068       TCGA-50-5072       TCGA-50-5930       TCGA-50-5931 
"PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" 
      TCGA-50-5932       TCGA-50-5933       TCGA-50-5935       TCGA-50-5936 
"PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" 
      TCGA-50-5939       TCGA-50-5941       TCGA-50-5942       TCGA-50-5944 
"PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" 
      TCGA-50-5946       TCGA-50-6590       TCGA-50-6591       TCGA-50-6592 
"PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" 
      TCGA-50-6593       TCGA-50-6594       TCGA-50-6595       TCGA-50-6597 
"PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" 
      TCGA-55-1592       TCGA-55-1594       TCGA-55-1595       TCGA-55-1596 
"PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" 
      TCGA-55-5899       TCGA-55-6543       TCGA-55-6642       TCGA-55-6712 
"PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" 
      TCGA-64-1676       TCGA-64-1677       TCGA-64-1678       TCGA-64-1680 
"PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" 
      TCGA-64-5774       TCGA-64-5775       TCGA-64-5778       TCGA-64-5779 
"PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" 
      TCGA-64-5781       TCGA-64-5815       TCGA-67-3770       TCGA-67-3771 
"PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE"   "PABPC3 MUTATED" 
      TCGA-67-3772       TCGA-67-3773       TCGA-67-3774       TCGA-67-6215 
"PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE"   "PABPC3 MUTATED" 
      TCGA-67-6216       TCGA-67-6217       TCGA-71-6725       TCGA-73-4658 
"PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" 
      TCGA-73-4659       TCGA-73-4662       TCGA-73-4666       TCGA-73-4668 
"PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE"   "PABPC3 MUTATED" "PABPC3 WILD-TYPE" 
      TCGA-73-4670       TCGA-73-4675       TCGA-73-4676       TCGA-73-4677 
"PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" 
      TCGA-91-6828       TCGA-91-6829       TCGA-91-6831       TCGA-91-6835 
"PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" 
      TCGA-91-6836 
"PABPC3 WILD-TYPE" 
      TCGA-05-4249       TCGA-05-4250       TCGA-05-4382       TCGA-05-4384 
"PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" 
      TCGA-05-4390       TCGA-05-4396       TCGA-05-4397       TCGA-05-4398 
  "PABPC3 MUTATED" "PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" 
      TCGA-05-4402       TCGA-05-4405       TCGA-05-4415       TCGA-05-4417 
"PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" 
      TCGA-05-4418       TCGA-05-4420       TCGA-05-4424       TCGA-05-4426 
"PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE"   "PABPC3 MUTATED" 
      TCGA-05-4427       TCGA-05-4430       TCGA-05-4432       TCGA-05-4433 
  "PABPC3 MUTATED" "PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" 
      TCGA-05-4434       TCGA-05-5420       TCGA-05-5423       TCGA-05-5425 
"PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" 
      TCGA-05-5429       TCGA-05-5715       TCGA-35-3615       TCGA-35-4122 
"PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" 
      TCGA-35-4123       TCGA-35-5375       TCGA-38-4625       TCGA-38-4626 
"PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" 
      TCGA-38-4627       TCGA-38-4628       TCGA-38-4629       TCGA-38-4630 
"PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" 
      TCGA-38-4631       TCGA-38-4632       TCGA-38-6178       TCGA-44-2655 
"PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" 
      TCGA-44-2656       TCGA-44-2657       TCGA-44-2659       TCGA-44-2661 
"PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" 
      TCGA-44-2662       TCGA-44-2665       TCGA-44-2666       TCGA-44-2668 
"PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" 
      TCGA-44-3396       TCGA-44-3398       TCGA-44-3918       TCGA-44-3919 
"PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" 
      TCGA-44-4112       TCGA-44-5643       TCGA-44-5645       TCGA-44-6144 
"PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" 
      TCGA-44-6145       TCGA-44-6146       TCGA-44-6147       TCGA-44-6148 
"PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" 
      TCGA-44-6774       TCGA-44-6775       TCGA-44-6776       TCGA-44-6777 
"PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE"   "PABPC3 MUTATED" "PABPC3 WILD-TYPE" 
      TCGA-44-6778       TCGA-44-6779       TCGA-49-4486       TCGA-49-4487 
"PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" 
      TCGA-49-4488       TCGA-49-4490       TCGA-49-4494       TCGA-49-4501 
"PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" 
      TCGA-49-4505       TCGA-49-4506       TCGA-49-4507       TCGA-49-4510 
"PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" 
      TCGA-49-4512       TCGA-49-4514       TCGA-49-6742       TCGA-49-6743 
"PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" 
      TCGA-49-6744       TCGA-49-6745       TCGA-50-5044       TCGA-50-5045 
"PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" 
      TCGA-50-5049       TCGA-50-5051       TCGA-50-5055       TCGA-50-5066 
"PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" 
      TCGA-50-5068       TCGA-50-5072       TCGA-50-5930       TCGA-50-5931 
"PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" 
      TCGA-50-5932       TCGA-50-5933       TCGA-50-5935       TCGA-50-5936 
"PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" 
      TCGA-50-5939       TCGA-50-5941       TCGA-50-5942       TCGA-50-5944 
"PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" 
      TCGA-50-5946       TCGA-50-6590       TCGA-50-6591       TCGA-50-6592 
"PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" 
      TCGA-50-6593       TCGA-50-6594       TCGA-50-6595       TCGA-50-6597 
"PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" 
      TCGA-55-1592       TCGA-55-1594       TCGA-55-1595       TCGA-55-1596 
"PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" 
      TCGA-55-5899       TCGA-55-6543       TCGA-55-6642       TCGA-55-6712 
"PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" 
      TCGA-64-1676       TCGA-64-1677       TCGA-64-1678       TCGA-64-1680 
"PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" 
      TCGA-64-5774       TCGA-64-5775       TCGA-64-5778       TCGA-64-5779 
"PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" 
      TCGA-64-5781       TCGA-64-5815       TCGA-67-3770       TCGA-67-3771 
"PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE"   "PABPC3 MUTATED" 
      TCGA-67-3772       TCGA-67-3773       TCGA-67-3774       TCGA-67-6215 
"PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE"   "PABPC3 MUTATED" 
      TCGA-67-6216       TCGA-67-6217       TCGA-71-6725       TCGA-73-4658 
"PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" 
      TCGA-73-4659       TCGA-73-4662       TCGA-73-4666       TCGA-73-4668 
"PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE"   "PABPC3 MUTATED" "PABPC3 WILD-TYPE" 
      TCGA-73-4670       TCGA-73-4675       TCGA-73-4676       TCGA-73-4677 
"PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" 
      TCGA-91-6828       TCGA-91-6829       TCGA-91-6831       TCGA-91-6835 
"PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" 
      TCGA-91-6836 
"PABPC3 WILD-TYPE" 
[1] "hr="     "7.3e+07"
D100V2, continuous
D100V3, binary
[1] "tbl2"
                  cls
clus               [,1] [,2]
  PABPC3 MUTATED      6    3
  PABPC3 WILD-TYPE   87   76
        clus
vv       PABPC3 MUTATED PABPC3 WILD-TYPE
  FEMALE              6               87
  MALE                3               76
D100V4, continuous
[1] "Remove cluster labels:" "PABPC3 MUTATED"        
clus
  PABPC3 MUTATED PABPC3 WILD-TYPE 
               1               11 
      TCGA-35-4122       TCGA-35-4123       TCGA-35-5375       TCGA-64-1677 
"PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" 
      TCGA-64-5778       TCGA-71-6725       TCGA-73-4659       TCGA-73-4662 
"PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" 
      TCGA-73-4668       TCGA-73-4676       TCGA-75-5122 
"PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" 
D100V5, multiclass
D100V6, multiclass
    clus
vv   PABPC3 MUTATED PABPC3 WILD-TYPE
  T1              3               38
  T2              6              102
  T3              0               14
  T4              0                8
D100V7, multiclass
       clus
vv      PABPC3 MUTATED PABPC3 WILD-TYPE
  N0                 7               88
  N1                 1               36
  N2+N3              1               34
D100V8, multiclass
    clus
vv   PABPC3 MUTATED PABPC3 WILD-TYPE
  M0              6              131
  M1              2                7
  MX              1               21
D100V9, multiclass
     clus
vv    PABPC3 MUTATED PABPC3 WILD-TYPE
  I                6               82
  II               1               32
  III              0               39
  IV               2                7
D100V10, binary
[1] "tbl2"
                  cls
clus               [,1] [,2]
  PABPC3 MUTATED      1    8
  PABPC3 WILD-TYPE   15  148
     clus
vv    PABPC3 MUTATED PABPC3 WILD-TYPE
  NO               1               15
  YES              8              148
D100V11, continuous
D100V12, continuous
D100V13, multiclass
                                             clus
vv                                            PABPC3 MUTATED PABPC3 WILD-TYPE
  CURRENT REFORMED SMOKER FOR < OR = 15 YEARS              7               55
  CURRENT REFORMED SMOKER FOR > 15 YEARS                   1               45
  CURRENT SMOKER                                           0               28
  LIFELONG NON-SMOKER                                      1               23
D100V14, continuous

Clustering(101) Variable = LRRIQ1 MUTATION ANALYSIS
D101V1, survival
                  sevent
clus2               0  1
  LRRIQ1 MUTATED   13  6
  LRRIQ1 WILD-TYPE 86 44
  LRRIQ1 MUTATED LRRIQ1 WILD-TYPE 
              19              130 
  LRRIQ1 MUTATED LRRIQ1 WILD-TYPE 
               6               44 
$`LRRIQ1 MUTATED`
TCGA-05-4396 TCGA-05-4397 TCGA-05-4417 TCGA-35-4123 TCGA-38-4626 TCGA-38-4628 
        9.96        24.03        14.93         5.95        85.32        49.02 
TCGA-38-4631 TCGA-44-3396 TCGA-44-3398 TCGA-44-6145 TCGA-49-6743 TCGA-50-5049 
       11.64        10.22         8.32         3.35        12.13        48.82 
TCGA-50-5066 TCGA-50-5939 TCGA-50-5941 TCGA-50-6590 TCGA-64-1678 TCGA-64-5781 
        9.76        15.12         9.37        42.31        39.09        39.52 
TCGA-91-6836 
        0.36 

$`LRRIQ1 WILD-TYPE`
TCGA-05-4249 TCGA-05-4250 TCGA-05-4382 TCGA-05-4384 TCGA-05-4390 TCGA-05-4398 
       38.07         3.98        19.92        14.01        37.02        47.05 
TCGA-05-4402 TCGA-05-4405 TCGA-05-4415 TCGA-05-4418 TCGA-05-4420 TCGA-05-4424 
        8.02        20.05         2.96         8.98        29.95        30.02 
TCGA-05-4426 TCGA-05-4427 TCGA-05-4430 TCGA-05-4432 TCGA-05-4433 TCGA-05-4434 
       26.01        26.01        25.02        25.02        24.00        15.02 
TCGA-05-5420 TCGA-05-5423 TCGA-05-5425 TCGA-05-5429 TCGA-05-5715 TCGA-35-3615 
        1.02         4.96         2.96         0.99         2.04         0.46 
TCGA-35-4122 TCGA-35-5375 TCGA-38-4625 TCGA-38-4627 TCGA-38-4629 TCGA-38-4630 
        7.36         8.68        47.61        37.71        28.37        35.28 
TCGA-38-4632 TCGA-38-6178 TCGA-44-2655 TCGA-44-2656 TCGA-44-2657 TCGA-44-2659 
       44.61         5.19        18.87        19.10        13.15        17.39 
TCGA-44-2661 TCGA-44-2662 TCGA-44-2665 TCGA-44-2666 TCGA-44-2668 TCGA-44-3918 
        3.39        15.78        13.15         3.19         8.09         6.44 
TCGA-44-3919 TCGA-44-4112 TCGA-44-5643 TCGA-44-5645 TCGA-44-6144 TCGA-44-6146 
        6.21         4.60         3.48         6.84         0.30         9.93 
TCGA-44-6147 TCGA-44-6148 TCGA-44-6774 TCGA-44-6775 TCGA-44-6776 TCGA-44-6777 
        7.76         3.12         5.42         2.70        63.72        32.45 
TCGA-44-6778 TCGA-44-6779 TCGA-49-4486 TCGA-49-4487 TCGA-49-4488 TCGA-49-4490 
       36.49        16.41        76.21        28.11        28.57        12.66 
TCGA-49-4494 TCGA-49-4501 TCGA-49-4505 TCGA-49-4506 TCGA-49-4507 TCGA-49-4510 
       35.54        46.72        14.07        32.84         8.81        29.46 
TCGA-49-4512 TCGA-49-4514 TCGA-49-6742 TCGA-49-6744 TCGA-49-6745 TCGA-50-5044 
       29.75        43.20        15.02        12.99         4.93        20.48 
TCGA-50-5045 TCGA-50-5051 TCGA-50-5055 TCGA-50-5068 TCGA-50-5072 TCGA-50-5930 
       71.47        14.96        25.81        49.28         8.05         9.27 
TCGA-50-5931 TCGA-50-5932 TCGA-50-5933 TCGA-50-5935 TCGA-50-5936 TCGA-50-5942 
        8.78        35.87        77.88        21.47         8.45         4.44 
TCGA-50-5944 TCGA-50-5946 TCGA-50-6591 TCGA-50-6592 TCGA-50-6593 TCGA-50-6594 
       12.26        11.47         3.88        25.51        11.05        12.16 
TCGA-50-6595 TCGA-50-6597 TCGA-55-1592 TCGA-55-1594 TCGA-55-1595 TCGA-55-1596 
        6.21        33.37        23.05        38.73        48.62        45.17 
TCGA-55-5899 TCGA-55-6543 TCGA-55-6642 TCGA-55-6712 TCGA-64-1676 TCGA-64-1677 
        2.86         0.07        32.61         0.79        56.81        20.65 
TCGA-64-1680 TCGA-64-5774 TCGA-64-5775 TCGA-64-5778 TCGA-64-5779 TCGA-64-5815 
       37.02        83.84         0.10        30.44        16.67         7.33 
TCGA-67-3770 TCGA-67-3771 TCGA-67-3772 TCGA-67-3773 TCGA-67-3774 TCGA-67-6215 
        0.99         1.97         0.59         2.04         0.59         0.89 
TCGA-67-6216 TCGA-67-6217 TCGA-71-6725 TCGA-73-4658 TCGA-73-4659 TCGA-73-4662 
        0.69        13.87         2.01        52.57        23.38        29.95 
TCGA-73-4666 TCGA-73-4668 TCGA-73-4670 TCGA-73-4675 TCGA-73-4676 TCGA-73-4677 
       20.28        15.35         0.46         1.32         4.01         1.25 
TCGA-91-6828 TCGA-91-6829 TCGA-91-6831 TCGA-91-6835 
        1.22        41.33         1.28         1.15 

  LRRIQ1 MUTATED LRRIQ1 WILD-TYPE 
            0.36             0.07 
  LRRIQ1 MUTATED LRRIQ1 WILD-TYPE 
           85.32            83.84 
  LRRIQ1 MUTATED LRRIQ1 WILD-TYPE 
           12.13            13.94 
[1] "0.4 - 85.3 (12.1)" "0.1 - 83.8 (13.9)"
      TCGA-05-4249       TCGA-05-4250       TCGA-05-4382       TCGA-05-4384 
"LRRIQ1 WILD-TYPE" "LRRIQ1 WILD-TYPE" "LRRIQ1 WILD-TYPE" "LRRIQ1 WILD-TYPE" 
      TCGA-05-4390       TCGA-05-4396       TCGA-05-4397       TCGA-05-4398 
"LRRIQ1 WILD-TYPE"   "LRRIQ1 MUTATED"   "LRRIQ1 MUTATED" "LRRIQ1 WILD-TYPE" 
      TCGA-05-4402       TCGA-05-4405       TCGA-05-4415       TCGA-05-4417 
"LRRIQ1 WILD-TYPE" "LRRIQ1 WILD-TYPE" "LRRIQ1 WILD-TYPE"   "LRRIQ1 MUTATED" 
      TCGA-05-4418       TCGA-05-4420       TCGA-05-4424       TCGA-05-4426 
"LRRIQ1 WILD-TYPE" "LRRIQ1 WILD-TYPE" "LRRIQ1 WILD-TYPE" "LRRIQ1 WILD-TYPE" 
      TCGA-05-4427       TCGA-05-4430       TCGA-05-4432       TCGA-05-4433 
"LRRIQ1 WILD-TYPE" "LRRIQ1 WILD-TYPE" "LRRIQ1 WILD-TYPE" "LRRIQ1 WILD-TYPE" 
      TCGA-05-4434       TCGA-05-5420       TCGA-05-5423       TCGA-05-5425 
"LRRIQ1 WILD-TYPE" "LRRIQ1 WILD-TYPE" "LRRIQ1 WILD-TYPE" "LRRIQ1 WILD-TYPE" 
      TCGA-05-5429       TCGA-05-5715       TCGA-35-3615       TCGA-35-4122 
"LRRIQ1 WILD-TYPE" "LRRIQ1 WILD-TYPE" "LRRIQ1 WILD-TYPE" "LRRIQ1 WILD-TYPE" 
      TCGA-35-4123       TCGA-35-5375       TCGA-38-4625       TCGA-38-4626 
  "LRRIQ1 MUTATED" "LRRIQ1 WILD-TYPE" "LRRIQ1 WILD-TYPE"   "LRRIQ1 MUTATED" 
      TCGA-38-4627       TCGA-38-4628       TCGA-38-4629       TCGA-38-4630 
"LRRIQ1 WILD-TYPE"   "LRRIQ1 MUTATED" "LRRIQ1 WILD-TYPE" "LRRIQ1 WILD-TYPE" 
      TCGA-38-4631       TCGA-38-4632       TCGA-38-6178       TCGA-44-2655 
  "LRRIQ1 MUTATED" "LRRIQ1 WILD-TYPE" "LRRIQ1 WILD-TYPE" "LRRIQ1 WILD-TYPE" 
      TCGA-44-2656       TCGA-44-2657       TCGA-44-2659       TCGA-44-2661 
"LRRIQ1 WILD-TYPE" "LRRIQ1 WILD-TYPE" "LRRIQ1 WILD-TYPE" "LRRIQ1 WILD-TYPE" 
      TCGA-44-2662       TCGA-44-2665       TCGA-44-2666       TCGA-44-2668 
"LRRIQ1 WILD-TYPE" "LRRIQ1 WILD-TYPE" "LRRIQ1 WILD-TYPE" "LRRIQ1 WILD-TYPE" 
      TCGA-44-3396       TCGA-44-3398       TCGA-44-3918       TCGA-44-3919 
  "LRRIQ1 MUTATED"   "LRRIQ1 MUTATED" "LRRIQ1 WILD-TYPE" "LRRIQ1 WILD-TYPE" 
      TCGA-44-4112       TCGA-44-5643       TCGA-44-5645       TCGA-44-6144 
"LRRIQ1 WILD-TYPE" "LRRIQ1 WILD-TYPE" "LRRIQ1 WILD-TYPE" "LRRIQ1 WILD-TYPE" 
      TCGA-44-6145       TCGA-44-6146       TCGA-44-6147       TCGA-44-6148 
  "LRRIQ1 MUTATED" "LRRIQ1 WILD-TYPE" "LRRIQ1 WILD-TYPE" "LRRIQ1 WILD-TYPE" 
      TCGA-44-6774       TCGA-44-6775       TCGA-44-6776       TCGA-44-6777 
"LRRIQ1 WILD-TYPE" "LRRIQ1 WILD-TYPE" "LRRIQ1 WILD-TYPE" "LRRIQ1 WILD-TYPE" 
      TCGA-44-6778       TCGA-44-6779       TCGA-49-4486       TCGA-49-4487 
"LRRIQ1 WILD-TYPE" "LRRIQ1 WILD-TYPE" "LRRIQ1 WILD-TYPE" "LRRIQ1 WILD-TYPE" 
      TCGA-49-4488       TCGA-49-4490       TCGA-49-4494       TCGA-49-4501 
"LRRIQ1 WILD-TYPE" "LRRIQ1 WILD-TYPE" "LRRIQ1 WILD-TYPE" "LRRIQ1 WILD-TYPE" 
      TCGA-49-4505       TCGA-49-4506       TCGA-49-4507       TCGA-49-4510 
"LRRIQ1 WILD-TYPE" "LRRIQ1 WILD-TYPE" "LRRIQ1 WILD-TYPE" "LRRIQ1 WILD-TYPE" 
      TCGA-49-4512       TCGA-49-4514       TCGA-49-6742       TCGA-49-6743 
"LRRIQ1 WILD-TYPE" "LRRIQ1 WILD-TYPE" "LRRIQ1 WILD-TYPE"   "LRRIQ1 MUTATED" 
      TCGA-49-6744       TCGA-49-6745       TCGA-50-5044       TCGA-50-5045 
"LRRIQ1 WILD-TYPE" "LRRIQ1 WILD-TYPE" "LRRIQ1 WILD-TYPE" "LRRIQ1 WILD-TYPE" 
      TCGA-50-5049       TCGA-50-5051       TCGA-50-5055       TCGA-50-5066 
  "LRRIQ1 MUTATED" "LRRIQ1 WILD-TYPE" "LRRIQ1 WILD-TYPE"   "LRRIQ1 MUTATED" 
      TCGA-50-5068       TCGA-50-5072       TCGA-50-5930       TCGA-50-5931 
"LRRIQ1 WILD-TYPE" "LRRIQ1 WILD-TYPE" "LRRIQ1 WILD-TYPE" "LRRIQ1 WILD-TYPE" 
      TCGA-50-5932       TCGA-50-5933       TCGA-50-5935       TCGA-50-5936 
"LRRIQ1 WILD-TYPE" "LRRIQ1 WILD-TYPE" "LRRIQ1 WILD-TYPE" "LRRIQ1 WILD-TYPE" 
      TCGA-50-5939       TCGA-50-5941       TCGA-50-5942       TCGA-50-5944 
  "LRRIQ1 MUTATED"   "LRRIQ1 MUTATED" "LRRIQ1 WILD-TYPE" "LRRIQ1 WILD-TYPE" 
      TCGA-50-5946       TCGA-50-6590       TCGA-50-6591       TCGA-50-6592 
"LRRIQ1 WILD-TYPE"   "LRRIQ1 MUTATED" "LRRIQ1 WILD-TYPE" "LRRIQ1 WILD-TYPE" 
      TCGA-50-6593       TCGA-50-6594       TCGA-50-6595       TCGA-50-6597 
"LRRIQ1 WILD-TYPE" "LRRIQ1 WILD-TYPE" "LRRIQ1 WILD-TYPE" "LRRIQ1 WILD-TYPE" 
      TCGA-55-1592       TCGA-55-1594       TCGA-55-1595       TCGA-55-1596 
"LRRIQ1 WILD-TYPE" "LRRIQ1 WILD-TYPE" "LRRIQ1 WILD-TYPE" "LRRIQ1 WILD-TYPE" 
      TCGA-55-5899       TCGA-55-6543       TCGA-55-6642       TCGA-55-6712 
"LRRIQ1 WILD-TYPE" "LRRIQ1 WILD-TYPE" "LRRIQ1 WILD-TYPE" "LRRIQ1 WILD-TYPE" 
      TCGA-64-1676       TCGA-64-1677       TCGA-64-1678       TCGA-64-1680 
"LRRIQ1 WILD-TYPE" "LRRIQ1 WILD-TYPE"   "LRRIQ1 MUTATED" "LRRIQ1 WILD-TYPE" 
      TCGA-64-5774       TCGA-64-5775       TCGA-64-5778       TCGA-64-5779 
"LRRIQ1 WILD-TYPE" "LRRIQ1 WILD-TYPE" "LRRIQ1 WILD-TYPE" "LRRIQ1 WILD-TYPE" 
      TCGA-64-5781       TCGA-64-5815       TCGA-67-3770       TCGA-67-3771 
  "LRRIQ1 MUTATED" "LRRIQ1 WILD-TYPE" "LRRIQ1 WILD-TYPE" "LRRIQ1 WILD-TYPE" 
      TCGA-67-3772       TCGA-67-3773       TCGA-67-3774       TCGA-67-6215 
"LRRIQ1 WILD-TYPE" "LRRIQ1 WILD-TYPE" "LRRIQ1 WILD-TYPE" "LRRIQ1 WILD-TYPE" 
      TCGA-67-6216       TCGA-67-6217       TCGA-71-6725       TCGA-73-4658 
"LRRIQ1 WILD-TYPE" "LRRIQ1 WILD-TYPE" "LRRIQ1 WILD-TYPE" "LRRIQ1 WILD-TYPE" 
      TCGA-73-4659       TCGA-73-4662       TCGA-73-4666       TCGA-73-4668 
"LRRIQ1 WILD-TYPE" "LRRIQ1 WILD-TYPE" "LRRIQ1 WILD-TYPE" "LRRIQ1 WILD-TYPE" 
      TCGA-73-4670       TCGA-73-4675       TCGA-73-4676       TCGA-73-4677 
"LRRIQ1 WILD-TYPE" "LRRIQ1 WILD-TYPE" "LRRIQ1 WILD-TYPE" "LRRIQ1 WILD-TYPE" 
      TCGA-91-6828       TCGA-91-6829       TCGA-91-6831       TCGA-91-6835 
"LRRIQ1 WILD-TYPE" "LRRIQ1 WILD-TYPE" "LRRIQ1 WILD-TYPE" "LRRIQ1 WILD-TYPE" 
      TCGA-91-6836 
  "LRRIQ1 MUTATED" 
      TCGA-05-4249       TCGA-05-4250       TCGA-05-4382       TCGA-05-4384 
"LRRIQ1 WILD-TYPE" "LRRIQ1 WILD-TYPE" "LRRIQ1 WILD-TYPE" "LRRIQ1 WILD-TYPE" 
      TCGA-05-4390       TCGA-05-4396       TCGA-05-4397       TCGA-05-4398 
"LRRIQ1 WILD-TYPE"   "LRRIQ1 MUTATED"   "LRRIQ1 MUTATED" "LRRIQ1 WILD-TYPE" 
      TCGA-05-4402       TCGA-05-4405       TCGA-05-4415       TCGA-05-4417 
"LRRIQ1 WILD-TYPE" "LRRIQ1 WILD-TYPE" "LRRIQ1 WILD-TYPE"   "LRRIQ1 MUTATED" 
      TCGA-05-4418       TCGA-05-4420       TCGA-05-4424       TCGA-05-4426 
"LRRIQ1 WILD-TYPE" "LRRIQ1 WILD-TYPE" "LRRIQ1 WILD-TYPE" "LRRIQ1 WILD-TYPE" 
      TCGA-05-4427       TCGA-05-4430       TCGA-05-4432       TCGA-05-4433 
"LRRIQ1 WILD-TYPE" "LRRIQ1 WILD-TYPE" "LRRIQ1 WILD-TYPE" "LRRIQ1 WILD-TYPE" 
      TCGA-05-4434       TCGA-05-5420       TCGA-05-5423       TCGA-05-5425 
"LRRIQ1 WILD-TYPE" "LRRIQ1 WILD-TYPE" "LRRIQ1 WILD-TYPE" "LRRIQ1 WILD-TYPE" 
      TCGA-05-5429       TCGA-05-5715       TCGA-35-3615       TCGA-35-4122 
"LRRIQ1 WILD-TYPE" "LRRIQ1 WILD-TYPE" "LRRIQ1 WILD-TYPE" "LRRIQ1 WILD-TYPE" 
      TCGA-35-4123       TCGA-35-5375       TCGA-38-4625       TCGA-38-4626 
  "LRRIQ1 MUTATED" "LRRIQ1 WILD-TYPE" "LRRIQ1 WILD-TYPE"   "LRRIQ1 MUTATED" 
      TCGA-38-4627       TCGA-38-4628       TCGA-38-4629       TCGA-38-4630 
"LRRIQ1 WILD-TYPE"   "LRRIQ1 MUTATED" "LRRIQ1 WILD-TYPE" "LRRIQ1 WILD-TYPE" 
      TCGA-38-4631       TCGA-38-4632       TCGA-38-6178       TCGA-44-2655 
  "LRRIQ1 MUTATED" "LRRIQ1 WILD-TYPE" "LRRIQ1 WILD-TYPE" "LRRIQ1 WILD-TYPE" 
      TCGA-44-2656       TCGA-44-2657       TCGA-44-2659       TCGA-44-2661 
"LRRIQ1 WILD-TYPE" "LRRIQ1 WILD-TYPE" "LRRIQ1 WILD-TYPE" "LRRIQ1 WILD-TYPE" 
      TCGA-44-2662       TCGA-44-2665       TCGA-44-2666       TCGA-44-2668 
"LRRIQ1 WILD-TYPE" "LRRIQ1 WILD-TYPE" "LRRIQ1 WILD-TYPE" "LRRIQ1 WILD-TYPE" 
      TCGA-44-3396       TCGA-44-3398       TCGA-44-3918       TCGA-44-3919 
  "LRRIQ1 MUTATED"   "LRRIQ1 MUTATED" "LRRIQ1 WILD-TYPE" "LRRIQ1 WILD-TYPE" 
      TCGA-44-4112       TCGA-44-5643       TCGA-44-5645       TCGA-44-6144 
"LRRIQ1 WILD-TYPE" "LRRIQ1 WILD-TYPE" "LRRIQ1 WILD-TYPE" "LRRIQ1 WILD-TYPE" 
      TCGA-44-6145       TCGA-44-6146       TCGA-44-6147       TCGA-44-6148 
  "LRRIQ1 MUTATED" "LRRIQ1 WILD-TYPE" "LRRIQ1 WILD-TYPE" "LRRIQ1 WILD-TYPE" 
      TCGA-44-6774       TCGA-44-6775       TCGA-44-6776       TCGA-44-6777 
"LRRIQ1 WILD-TYPE" "LRRIQ1 WILD-TYPE" "LRRIQ1 WILD-TYPE" "LRRIQ1 WILD-TYPE" 
      TCGA-44-6778       TCGA-44-6779       TCGA-49-4486       TCGA-49-4487 
"LRRIQ1 WILD-TYPE" "LRRIQ1 WILD-TYPE" "LRRIQ1 WILD-TYPE" "LRRIQ1 WILD-TYPE" 
      TCGA-49-4488       TCGA-49-4490       TCGA-49-4494       TCGA-49-4501 
"LRRIQ1 WILD-TYPE" "LRRIQ1 WILD-TYPE" "LRRIQ1 WILD-TYPE" "LRRIQ1 WILD-TYPE" 
      TCGA-49-4505       TCGA-49-4506       TCGA-49-4507       TCGA-49-4510 
"LRRIQ1 WILD-TYPE" "LRRIQ1 WILD-TYPE" "LRRIQ1 WILD-TYPE" "LRRIQ1 WILD-TYPE" 
      TCGA-49-4512       TCGA-49-4514       TCGA-49-6742       TCGA-49-6743 
"LRRIQ1 WILD-TYPE" "LRRIQ1 WILD-TYPE" "LRRIQ1 WILD-TYPE"   "LRRIQ1 MUTATED" 
      TCGA-49-6744       TCGA-49-6745       TCGA-50-5044       TCGA-50-5045 
"LRRIQ1 WILD-TYPE" "LRRIQ1 WILD-TYPE" "LRRIQ1 WILD-TYPE" "LRRIQ1 WILD-TYPE" 
      TCGA-50-5049       TCGA-50-5051       TCGA-50-5055       TCGA-50-5066 
  "LRRIQ1 MUTATED" "LRRIQ1 WILD-TYPE" "LRRIQ1 WILD-TYPE"   "LRRIQ1 MUTATED" 
      TCGA-50-5068       TCGA-50-5072       TCGA-50-5930       TCGA-50-5931 
"LRRIQ1 WILD-TYPE" "LRRIQ1 WILD-TYPE" "LRRIQ1 WILD-TYPE" "LRRIQ1 WILD-TYPE" 
      TCGA-50-5932       TCGA-50-5933       TCGA-50-5935       TCGA-50-5936 
"LRRIQ1 WILD-TYPE" "LRRIQ1 WILD-TYPE" "LRRIQ1 WILD-TYPE" "LRRIQ1 WILD-TYPE" 
      TCGA-50-5939       TCGA-50-5941       TCGA-50-5942       TCGA-50-5944 
  "LRRIQ1 MUTATED"   "LRRIQ1 MUTATED" "LRRIQ1 WILD-TYPE" "LRRIQ1 WILD-TYPE" 
      TCGA-50-5946       TCGA-50-6590       TCGA-50-6591       TCGA-50-6592 
"LRRIQ1 WILD-TYPE"   "LRRIQ1 MUTATED" "LRRIQ1 WILD-TYPE" "LRRIQ1 WILD-TYPE" 
      TCGA-50-6593       TCGA-50-6594       TCGA-50-6595       TCGA-50-6597 
"LRRIQ1 WILD-TYPE" "LRRIQ1 WILD-TYPE" "LRRIQ1 WILD-TYPE" "LRRIQ1 WILD-TYPE" 
      TCGA-55-1592       TCGA-55-1594       TCGA-55-1595       TCGA-55-1596 
"LRRIQ1 WILD-TYPE" "LRRIQ1 WILD-TYPE" "LRRIQ1 WILD-TYPE" "LRRIQ1 WILD-TYPE" 
      TCGA-55-5899       TCGA-55-6543       TCGA-55-6642       TCGA-55-6712 
"LRRIQ1 WILD-TYPE" "LRRIQ1 WILD-TYPE" "LRRIQ1 WILD-TYPE" "LRRIQ1 WILD-TYPE" 
      TCGA-64-1676       TCGA-64-1677       TCGA-64-1678       TCGA-64-1680 
"LRRIQ1 WILD-TYPE" "LRRIQ1 WILD-TYPE"   "LRRIQ1 MUTATED" "LRRIQ1 WILD-TYPE" 
      TCGA-64-5774       TCGA-64-5775       TCGA-64-5778       TCGA-64-5779 
"LRRIQ1 WILD-TYPE" "LRRIQ1 WILD-TYPE" "LRRIQ1 WILD-TYPE" "LRRIQ1 WILD-TYPE" 
      TCGA-64-5781       TCGA-64-5815       TCGA-67-3770       TCGA-67-3771 
  "LRRIQ1 MUTATED" "LRRIQ1 WILD-TYPE" "LRRIQ1 WILD-TYPE" "LRRIQ1 WILD-TYPE" 
      TCGA-67-3772       TCGA-67-3773       TCGA-67-3774       TCGA-67-6215 
"LRRIQ1 WILD-TYPE" "LRRIQ1 WILD-TYPE" "LRRIQ1 WILD-TYPE" "LRRIQ1 WILD-TYPE" 
      TCGA-67-6216       TCGA-67-6217       TCGA-71-6725       TCGA-73-4658 
"LRRIQ1 WILD-TYPE" "LRRIQ1 WILD-TYPE" "LRRIQ1 WILD-TYPE" "LRRIQ1 WILD-TYPE" 
      TCGA-73-4659       TCGA-73-4662       TCGA-73-4666       TCGA-73-4668 
"LRRIQ1 WILD-TYPE" "LRRIQ1 WILD-TYPE" "LRRIQ1 WILD-TYPE" "LRRIQ1 WILD-TYPE" 
      TCGA-73-4670       TCGA-73-4675       TCGA-73-4676       TCGA-73-4677 
"LRRIQ1 WILD-TYPE" "LRRIQ1 WILD-TYPE" "LRRIQ1 WILD-TYPE" "LRRIQ1 WILD-TYPE" 
      TCGA-91-6828       TCGA-91-6829       TCGA-91-6831       TCGA-91-6835 
"LRRIQ1 WILD-TYPE" "LRRIQ1 WILD-TYPE" "LRRIQ1 WILD-TYPE" "LRRIQ1 WILD-TYPE" 
      TCGA-91-6836 
  "LRRIQ1 MUTATED" 
      TCGA-05-4249       TCGA-05-4250       TCGA-05-4382       TCGA-05-4384 
"LRRIQ1 WILD-TYPE" "LRRIQ1 WILD-TYPE" "LRRIQ1 WILD-TYPE" "LRRIQ1 WILD-TYPE" 
      TCGA-05-4390       TCGA-05-4396       TCGA-05-4397       TCGA-05-4398 
"LRRIQ1 WILD-TYPE"   "LRRIQ1 MUTATED"   "LRRIQ1 MUTATED" "LRRIQ1 WILD-TYPE" 
      TCGA-05-4402       TCGA-05-4405       TCGA-05-4415       TCGA-05-4417 
"LRRIQ1 WILD-TYPE" "LRRIQ1 WILD-TYPE" "LRRIQ1 WILD-TYPE"   "LRRIQ1 MUTATED" 
      TCGA-05-4418       TCGA-05-4420       TCGA-05-4424       TCGA-05-4426 
"LRRIQ1 WILD-TYPE" "LRRIQ1 WILD-TYPE" "LRRIQ1 WILD-TYPE" "LRRIQ1 WILD-TYPE" 
      TCGA-05-4427       TCGA-05-4430       TCGA-05-4432       TCGA-05-4433 
"LRRIQ1 WILD-TYPE" "LRRIQ1 WILD-TYPE" "LRRIQ1 WILD-TYPE" "LRRIQ1 WILD-TYPE" 
      TCGA-05-4434       TCGA-05-5420       TCGA-05-5423       TCGA-05-5425 
"LRRIQ1 WILD-TYPE" "LRRIQ1 WILD-TYPE" "LRRIQ1 WILD-TYPE" "LRRIQ1 WILD-TYPE" 
      TCGA-05-5429       TCGA-05-5715       TCGA-35-3615       TCGA-35-4122 
"LRRIQ1 WILD-TYPE" "LRRIQ1 WILD-TYPE" "LRRIQ1 WILD-TYPE" "LRRIQ1 WILD-TYPE" 
      TCGA-35-4123       TCGA-35-5375       TCGA-38-4625       TCGA-38-4626 
  "LRRIQ1 MUTATED" "LRRIQ1 WILD-TYPE" "LRRIQ1 WILD-TYPE"   "LRRIQ1 MUTATED" 
      TCGA-38-4627       TCGA-38-4628       TCGA-38-4629       TCGA-38-4630 
"LRRIQ1 WILD-TYPE"   "LRRIQ1 MUTATED" "LRRIQ1 WILD-TYPE" "LRRIQ1 WILD-TYPE" 
      TCGA-38-4631       TCGA-38-4632       TCGA-38-6178       TCGA-44-2655 
  "LRRIQ1 MUTATED" "LRRIQ1 WILD-TYPE" "LRRIQ1 WILD-TYPE" "LRRIQ1 WILD-TYPE" 
      TCGA-44-2656       TCGA-44-2657       TCGA-44-2659       TCGA-44-2661 
"LRRIQ1 WILD-TYPE" "LRRIQ1 WILD-TYPE" "LRRIQ1 WILD-TYPE" "LRRIQ1 WILD-TYPE" 
      TCGA-44-2662       TCGA-44-2665       TCGA-44-2666       TCGA-44-2668 
"LRRIQ1 WILD-TYPE" "LRRIQ1 WILD-TYPE" "LRRIQ1 WILD-TYPE" "LRRIQ1 WILD-TYPE" 
      TCGA-44-3396       TCGA-44-3398       TCGA-44-3918       TCGA-44-3919 
  "LRRIQ1 MUTATED"   "LRRIQ1 MUTATED" "LRRIQ1 WILD-TYPE" "LRRIQ1 WILD-TYPE" 
      TCGA-44-4112       TCGA-44-5643       TCGA-44-5645       TCGA-44-6144 
"LRRIQ1 WILD-TYPE" "LRRIQ1 WILD-TYPE" "LRRIQ1 WILD-TYPE" "LRRIQ1 WILD-TYPE" 
      TCGA-44-6145       TCGA-44-6146       TCGA-44-6147       TCGA-44-6148 
  "LRRIQ1 MUTATED" "LRRIQ1 WILD-TYPE" "LRRIQ1 WILD-TYPE" "LRRIQ1 WILD-TYPE" 
      TCGA-44-6774       TCGA-44-6775       TCGA-44-6776       TCGA-44-6777 
"LRRIQ1 WILD-TYPE" "LRRIQ1 WILD-TYPE" "LRRIQ1 WILD-TYPE" "LRRIQ1 WILD-TYPE" 
      TCGA-44-6778       TCGA-44-6779       TCGA-49-4486       TCGA-49-4487 
"LRRIQ1 WILD-TYPE" "LRRIQ1 WILD-TYPE" "LRRIQ1 WILD-TYPE" "LRRIQ1 WILD-TYPE" 
      TCGA-49-4488       TCGA-49-4490       TCGA-49-4494       TCGA-49-4501 
"LRRIQ1 WILD-TYPE" "LRRIQ1 WILD-TYPE" "LRRIQ1 WILD-TYPE" "LRRIQ1 WILD-TYPE" 
      TCGA-49-4505       TCGA-49-4506       TCGA-49-4507       TCGA-49-4510 
"LRRIQ1 WILD-TYPE" "LRRIQ1 WILD-TYPE" "LRRIQ1 WILD-TYPE" "LRRIQ1 WILD-TYPE" 
      TCGA-49-4512       TCGA-49-4514       TCGA-49-6742       TCGA-49-6743 
"LRRIQ1 WILD-TYPE" "LRRIQ1 WILD-TYPE" "LRRIQ1 WILD-TYPE"   "LRRIQ1 MUTATED" 
      TCGA-49-6744       TCGA-49-6745       TCGA-50-5044       TCGA-50-5045 
"LRRIQ1 WILD-TYPE" "LRRIQ1 WILD-TYPE" "LRRIQ1 WILD-TYPE" "LRRIQ1 WILD-TYPE" 
      TCGA-50-5049       TCGA-50-5051       TCGA-50-5055       TCGA-50-5066 
  "LRRIQ1 MUTATED" "LRRIQ1 WILD-TYPE" "LRRIQ1 WILD-TYPE"   "LRRIQ1 MUTATED" 
      TCGA-50-5068       TCGA-50-5072       TCGA-50-5930       TCGA-50-5931 
"LRRIQ1 WILD-TYPE" "LRRIQ1 WILD-TYPE" "LRRIQ1 WILD-TYPE" "LRRIQ1 WILD-TYPE" 
      TCGA-50-5932       TCGA-50-5933       TCGA-50-5935       TCGA-50-5936 
"LRRIQ1 WILD-TYPE" "LRRIQ1 WILD-TYPE" "LRRIQ1 WILD-TYPE" "LRRIQ1 WILD-TYPE" 
      TCGA-50-5939       TCGA-50-5941       TCGA-50-5942       TCGA-50-5944 
  "LRRIQ1 MUTATED"   "LRRIQ1 MUTATED" "LRRIQ1 WILD-TYPE" "LRRIQ1 WILD-TYPE" 
      TCGA-50-5946       TCGA-50-6590       TCGA-50-6591       TCGA-50-6592 
"LRRIQ1 WILD-TYPE"   "LRRIQ1 MUTATED" "LRRIQ1 WILD-TYPE" "LRRIQ1 WILD-TYPE" 
      TCGA-50-6593       TCGA-50-6594       TCGA-50-6595       TCGA-50-6597 
"LRRIQ1 WILD-TYPE" "LRRIQ1 WILD-TYPE" "LRRIQ1 WILD-TYPE" "LRRIQ1 WILD-TYPE" 
      TCGA-55-1592       TCGA-55-1594       TCGA-55-1595       TCGA-55-1596 
"LRRIQ1 WILD-TYPE" "LRRIQ1 WILD-TYPE" "LRRIQ1 WILD-TYPE" "LRRIQ1 WILD-TYPE" 
      TCGA-55-5899       TCGA-55-6543       TCGA-55-6642       TCGA-55-6712 
"LRRIQ1 WILD-TYPE" "LRRIQ1 WILD-TYPE" "LRRIQ1 WILD-TYPE" "LRRIQ1 WILD-TYPE" 
      TCGA-64-1676       TCGA-64-1677       TCGA-64-1678       TCGA-64-1680 
"LRRIQ1 WILD-TYPE" "LRRIQ1 WILD-TYPE"   "LRRIQ1 MUTATED" "LRRIQ1 WILD-TYPE" 
      TCGA-64-5774       TCGA-64-5775       TCGA-64-5778       TCGA-64-5779 
"LRRIQ1 WILD-TYPE" "LRRIQ1 WILD-TYPE" "LRRIQ1 WILD-TYPE" "LRRIQ1 WILD-TYPE" 
      TCGA-64-5781       TCGA-64-5815       TCGA-67-3770       TCGA-67-3771 
  "LRRIQ1 MUTATED" "LRRIQ1 WILD-TYPE" "LRRIQ1 WILD-TYPE" "LRRIQ1 WILD-TYPE" 
      TCGA-67-3772       TCGA-67-3773       TCGA-67-3774       TCGA-67-6215 
"LRRIQ1 WILD-TYPE" "LRRIQ1 WILD-TYPE" "LRRIQ1 WILD-TYPE" "LRRIQ1 WILD-TYPE" 
      TCGA-67-6216       TCGA-67-6217       TCGA-71-6725       TCGA-73-4658 
"LRRIQ1 WILD-TYPE" "LRRIQ1 WILD-TYPE" "LRRIQ1 WILD-TYPE" "LRRIQ1 WILD-TYPE" 
      TCGA-73-4659       TCGA-73-4662       TCGA-73-4666       TCGA-73-4668 
"LRRIQ1 WILD-TYPE" "LRRIQ1 WILD-TYPE" "LRRIQ1 WILD-TYPE" "LRRIQ1 WILD-TYPE" 
      TCGA-73-4670       TCGA-73-4675       TCGA-73-4676       TCGA-73-4677 
"LRRIQ1 WILD-TYPE" "LRRIQ1 WILD-TYPE" "LRRIQ1 WILD-TYPE" "LRRIQ1 WILD-TYPE" 
      TCGA-91-6828       TCGA-91-6829       TCGA-91-6831       TCGA-91-6835 
"LRRIQ1 WILD-TYPE" "LRRIQ1 WILD-TYPE" "LRRIQ1 WILD-TYPE" "LRRIQ1 WILD-TYPE" 
      TCGA-91-6836 
  "LRRIQ1 MUTATED" 
[1] "hr=" "1.4"
D101V2, continuous
D101V3, binary
[1] "tbl2"
                  cls
clus               [,1] [,2]
  LRRIQ1 MUTATED     14    7
  LRRIQ1 WILD-TYPE   79   72
        clus
vv       LRRIQ1 MUTATED LRRIQ1 WILD-TYPE
  FEMALE             14               79
  MALE                7               72
D101V4, continuous
[1] "Remove cluster labels:" "LRRIQ1 MUTATED"        
clus
  LRRIQ1 MUTATED LRRIQ1 WILD-TYPE 
               1               11 
      TCGA-35-4122       TCGA-35-5375       TCGA-64-1677       TCGA-64-5778 
"LRRIQ1 WILD-TYPE" "LRRIQ1 WILD-TYPE" "LRRIQ1 WILD-TYPE" "LRRIQ1 WILD-TYPE" 
      TCGA-71-6725       TCGA-73-4659       TCGA-73-4662       TCGA-73-4666 
"LRRIQ1 WILD-TYPE" "LRRIQ1 WILD-TYPE" "LRRIQ1 WILD-TYPE" "LRRIQ1 WILD-TYPE" 
      TCGA-73-4668       TCGA-73-4676       TCGA-75-5122 
"LRRIQ1 WILD-TYPE" "LRRIQ1 WILD-TYPE" "LRRIQ1 WILD-TYPE" 
D101V5, multiclass
D101V6, multiclass
    clus
vv   LRRIQ1 MUTATED LRRIQ1 WILD-TYPE
  T1              4               37
  T2             15               93
  T3              1               13
  T4              1                7
D101V7, multiclass
       clus
vv      LRRIQ1 MUTATED LRRIQ1 WILD-TYPE
  N0                14               81
  N1                 3               34
  N2+N3              4               31
D101V8, multiclass
    clus
vv   LRRIQ1 MUTATED LRRIQ1 WILD-TYPE
  M0             19              118
  M1              0                9
  MX              2               20
D101V9, multiclass
     clus
vv    LRRIQ1 MUTATED LRRIQ1 WILD-TYPE
  I               12               76
  II               4               29
  III              5               34
  IV               0                9
D101V10, binary
[1] "tbl2"
                  cls
clus               [,1] [,2]
  LRRIQ1 MUTATED      1   20
  LRRIQ1 WILD-TYPE   15  136
     clus
vv    LRRIQ1 MUTATED LRRIQ1 WILD-TYPE
  NO               1               15
  YES             20              136
D101V11, continuous
D101V12, continuous
D101V13, multiclass
                                             clus
vv                                            LRRIQ1 MUTATED LRRIQ1 WILD-TYPE
  CURRENT REFORMED SMOKER FOR < OR = 15 YEARS             10               52
  CURRENT REFORMED SMOKER FOR > 15 YEARS                   3               43
  CURRENT SMOKER                                           5               23
  LIFELONG NON-SMOKER                                      2               22
D101V14, continuous

Clustering(102) Variable = IRX1 MUTATION ANALYSIS
D102V1, survival
                sevent
clus2             0  1
  IRX1 MUTATED    3  2
  IRX1 WILD-TYPE 96 48
  IRX1 MUTATED IRX1 WILD-TYPE 
             5            144 
  IRX1 MUTATED IRX1 WILD-TYPE 
             2             48 
$`IRX1 MUTATED`
TCGA-44-6777 TCGA-55-1592 TCGA-55-1596 TCGA-67-6217 TCGA-91-6831 
       32.45        23.05        45.17        13.87         1.28 

$`IRX1 WILD-TYPE`
TCGA-05-4249 TCGA-05-4250 TCGA-05-4382 TCGA-05-4384 TCGA-05-4390 TCGA-05-4396 
       38.07         3.98        19.92        14.01        37.02         9.96 
TCGA-05-4397 TCGA-05-4398 TCGA-05-4402 TCGA-05-4405 TCGA-05-4415 TCGA-05-4417 
       24.03        47.05         8.02        20.05         2.96        14.93 
TCGA-05-4418 TCGA-05-4420 TCGA-05-4424 TCGA-05-4426 TCGA-05-4427 TCGA-05-4430 
        8.98        29.95        30.02        26.01        26.01        25.02 
TCGA-05-4432 TCGA-05-4433 TCGA-05-4434 TCGA-05-5420 TCGA-05-5423 TCGA-05-5425 
       25.02        24.00        15.02         1.02         4.96         2.96 
TCGA-05-5429 TCGA-05-5715 TCGA-35-3615 TCGA-35-4122 TCGA-35-4123 TCGA-35-5375 
        0.99         2.04         0.46         7.36         5.95         8.68 
TCGA-38-4625 TCGA-38-4626 TCGA-38-4627 TCGA-38-4628 TCGA-38-4629 TCGA-38-4630 
       47.61        85.32        37.71        49.02        28.37        35.28 
TCGA-38-4631 TCGA-38-4632 TCGA-38-6178 TCGA-44-2655 TCGA-44-2656 TCGA-44-2657 
       11.64        44.61         5.19        18.87        19.10        13.15 
TCGA-44-2659 TCGA-44-2661 TCGA-44-2662 TCGA-44-2665 TCGA-44-2666 TCGA-44-2668 
       17.39         3.39        15.78        13.15         3.19         8.09 
TCGA-44-3396 TCGA-44-3398 TCGA-44-3918 TCGA-44-3919 TCGA-44-4112 TCGA-44-5643 
       10.22         8.32         6.44         6.21         4.60         3.48 
TCGA-44-5645 TCGA-44-6144 TCGA-44-6145 TCGA-44-6146 TCGA-44-6147 TCGA-44-6148 
        6.84         0.30         3.35         9.93         7.76         3.12 
TCGA-44-6774 TCGA-44-6775 TCGA-44-6776 TCGA-44-6778 TCGA-44-6779 TCGA-49-4486 
        5.42         2.70        63.72        36.49        16.41        76.21 
TCGA-49-4487 TCGA-49-4488 TCGA-49-4490 TCGA-49-4494 TCGA-49-4501 TCGA-49-4505 
       28.11        28.57        12.66        35.54        46.72        14.07 
TCGA-49-4506 TCGA-49-4507 TCGA-49-4510 TCGA-49-4512 TCGA-49-4514 TCGA-49-6742 
       32.84         8.81        29.46        29.75        43.20        15.02 
TCGA-49-6743 TCGA-49-6744 TCGA-49-6745 TCGA-50-5044 TCGA-50-5045 TCGA-50-5049 
       12.13        12.99         4.93        20.48        71.47        48.82 
TCGA-50-5051 TCGA-50-5055 TCGA-50-5066 TCGA-50-5068 TCGA-50-5072 TCGA-50-5930 
       14.96        25.81         9.76        49.28         8.05         9.27 
TCGA-50-5931 TCGA-50-5932 TCGA-50-5933 TCGA-50-5935 TCGA-50-5936 TCGA-50-5939 
        8.78        35.87        77.88        21.47         8.45        15.12 
TCGA-50-5941 TCGA-50-5942 TCGA-50-5944 TCGA-50-5946 TCGA-50-6590 TCGA-50-6591 
        9.37         4.44        12.26        11.47        42.31         3.88 
TCGA-50-6592 TCGA-50-6593 TCGA-50-6594 TCGA-50-6595 TCGA-50-6597 TCGA-55-1594 
       25.51        11.05        12.16         6.21        33.37        38.73 
TCGA-55-1595 TCGA-55-5899 TCGA-55-6543 TCGA-55-6642 TCGA-55-6712 TCGA-64-1676 
       48.62         2.86         0.07        32.61         0.79        56.81 
TCGA-64-1677 TCGA-64-1678 TCGA-64-1680 TCGA-64-5774 TCGA-64-5775 TCGA-64-5778 
       20.65        39.09        37.02        83.84         0.10        30.44 
TCGA-64-5779 TCGA-64-5781 TCGA-64-5815 TCGA-67-3770 TCGA-67-3771 TCGA-67-3772 
       16.67        39.52         7.33         0.99         1.97         0.59 
TCGA-67-3773 TCGA-67-3774 TCGA-67-6215 TCGA-67-6216 TCGA-71-6725 TCGA-73-4658 
        2.04         0.59         0.89         0.69         2.01        52.57 
TCGA-73-4659 TCGA-73-4662 TCGA-73-4666 TCGA-73-4668 TCGA-73-4670 TCGA-73-4675 
       23.38        29.95        20.28        15.35         0.46         1.32 
TCGA-73-4676 TCGA-73-4677 TCGA-91-6828 TCGA-91-6829 TCGA-91-6835 TCGA-91-6836 
        4.01         1.25         1.22        41.33         1.15         0.36 

  IRX1 MUTATED IRX1 WILD-TYPE 
          1.28           0.07 
  IRX1 MUTATED IRX1 WILD-TYPE 
         45.17          85.32 
  IRX1 MUTATED IRX1 WILD-TYPE 
         23.05          13.15 
[1] "1.3 - 45.2 (23.1)" "0.1 - 85.3 (13.2)"
    TCGA-05-4249     TCGA-05-4250     TCGA-05-4382     TCGA-05-4384 
"IRX1 WILD-TYPE" "IRX1 WILD-TYPE" "IRX1 WILD-TYPE" "IRX1 WILD-TYPE" 
    TCGA-05-4390     TCGA-05-4396     TCGA-05-4397     TCGA-05-4398 
"IRX1 WILD-TYPE" "IRX1 WILD-TYPE" "IRX1 WILD-TYPE" "IRX1 WILD-TYPE" 
    TCGA-05-4402     TCGA-05-4405     TCGA-05-4415     TCGA-05-4417 
"IRX1 WILD-TYPE" "IRX1 WILD-TYPE" "IRX1 WILD-TYPE" "IRX1 WILD-TYPE" 
    TCGA-05-4418     TCGA-05-4420     TCGA-05-4424     TCGA-05-4426 
"IRX1 WILD-TYPE" "IRX1 WILD-TYPE" "IRX1 WILD-TYPE" "IRX1 WILD-TYPE" 
    TCGA-05-4427     TCGA-05-4430     TCGA-05-4432     TCGA-05-4433 
"IRX1 WILD-TYPE" "IRX1 WILD-TYPE" "IRX1 WILD-TYPE" "IRX1 WILD-TYPE" 
    TCGA-05-4434     TCGA-05-5420     TCGA-05-5423     TCGA-05-5425 
"IRX1 WILD-TYPE" "IRX1 WILD-TYPE" "IRX1 WILD-TYPE" "IRX1 WILD-TYPE" 
    TCGA-05-5429     TCGA-05-5715     TCGA-35-3615     TCGA-35-4122 
"IRX1 WILD-TYPE" "IRX1 WILD-TYPE" "IRX1 WILD-TYPE" "IRX1 WILD-TYPE" 
    TCGA-35-4123     TCGA-35-5375     TCGA-38-4625     TCGA-38-4626 
"IRX1 WILD-TYPE" "IRX1 WILD-TYPE" "IRX1 WILD-TYPE" "IRX1 WILD-TYPE" 
    TCGA-38-4627     TCGA-38-4628     TCGA-38-4629     TCGA-38-4630 
"IRX1 WILD-TYPE" "IRX1 WILD-TYPE" "IRX1 WILD-TYPE" "IRX1 WILD-TYPE" 
    TCGA-38-4631     TCGA-38-4632     TCGA-38-6178     TCGA-44-2655 
"IRX1 WILD-TYPE" "IRX1 WILD-TYPE" "IRX1 WILD-TYPE" "IRX1 WILD-TYPE" 
    TCGA-44-2656     TCGA-44-2657     TCGA-44-2659     TCGA-44-2661 
"IRX1 WILD-TYPE" "IRX1 WILD-TYPE" "IRX1 WILD-TYPE" "IRX1 WILD-TYPE" 
    TCGA-44-2662     TCGA-44-2665     TCGA-44-2666     TCGA-44-2668 
"IRX1 WILD-TYPE" "IRX1 WILD-TYPE" "IRX1 WILD-TYPE" "IRX1 WILD-TYPE" 
    TCGA-44-3396     TCGA-44-3398     TCGA-44-3918     TCGA-44-3919 
"IRX1 WILD-TYPE" "IRX1 WILD-TYPE" "IRX1 WILD-TYPE" "IRX1 WILD-TYPE" 
    TCGA-44-4112     TCGA-44-5643     TCGA-44-5645     TCGA-44-6144 
"IRX1 WILD-TYPE" "IRX1 WILD-TYPE" "IRX1 WILD-TYPE" "IRX1 WILD-TYPE" 
    TCGA-44-6145     TCGA-44-6146     TCGA-44-6147     TCGA-44-6148 
"IRX1 WILD-TYPE" "IRX1 WILD-TYPE" "IRX1 WILD-TYPE" "IRX1 WILD-TYPE" 
    TCGA-44-6774     TCGA-44-6775     TCGA-44-6776     TCGA-44-6777 
"IRX1 WILD-TYPE" "IRX1 WILD-TYPE" "IRX1 WILD-TYPE"   "IRX1 MUTATED" 
    TCGA-44-6778     TCGA-44-6779     TCGA-49-4486     TCGA-49-4487 
"IRX1 WILD-TYPE" "IRX1 WILD-TYPE" "IRX1 WILD-TYPE" "IRX1 WILD-TYPE" 
    TCGA-49-4488     TCGA-49-4490     TCGA-49-4494     TCGA-49-4501 
"IRX1 WILD-TYPE" "IRX1 WILD-TYPE" "IRX1 WILD-TYPE" "IRX1 WILD-TYPE" 
    TCGA-49-4505     TCGA-49-4506     TCGA-49-4507     TCGA-49-4510 
"IRX1 WILD-TYPE" "IRX1 WILD-TYPE" "IRX1 WILD-TYPE" "IRX1 WILD-TYPE" 
    TCGA-49-4512     TCGA-49-4514     TCGA-49-6742     TCGA-49-6743 
"IRX1 WILD-TYPE" "IRX1 WILD-TYPE" "IRX1 WILD-TYPE" "IRX1 WILD-TYPE" 
    TCGA-49-6744     TCGA-49-6745     TCGA-50-5044     TCGA-50-5045 
"IRX1 WILD-TYPE" "IRX1 WILD-TYPE" "IRX1 WILD-TYPE" "IRX1 WILD-TYPE" 
    TCGA-50-5049     TCGA-50-5051     TCGA-50-5055     TCGA-50-5066 
"IRX1 WILD-TYPE" "IRX1 WILD-TYPE" "IRX1 WILD-TYPE" "IRX1 WILD-TYPE" 
    TCGA-50-5068     TCGA-50-5072     TCGA-50-5930     TCGA-50-5931 
"IRX1 WILD-TYPE" "IRX1 WILD-TYPE" "IRX1 WILD-TYPE" "IRX1 WILD-TYPE" 
    TCGA-50-5932     TCGA-50-5933     TCGA-50-5935     TCGA-50-5936 
"IRX1 WILD-TYPE" "IRX1 WILD-TYPE" "IRX1 WILD-TYPE" "IRX1 WILD-TYPE" 
    TCGA-50-5939     TCGA-50-5941     TCGA-50-5942     TCGA-50-5944 
"IRX1 WILD-TYPE" "IRX1 WILD-TYPE" "IRX1 WILD-TYPE" "IRX1 WILD-TYPE" 
    TCGA-50-5946     TCGA-50-6590     TCGA-50-6591     TCGA-50-6592 
"IRX1 WILD-TYPE" "IRX1 WILD-TYPE" "IRX1 WILD-TYPE" "IRX1 WILD-TYPE" 
    TCGA-50-6593     TCGA-50-6594     TCGA-50-6595     TCGA-50-6597 
"IRX1 WILD-TYPE" "IRX1 WILD-TYPE" "IRX1 WILD-TYPE" "IRX1 WILD-TYPE" 
    TCGA-55-1592     TCGA-55-1594     TCGA-55-1595     TCGA-55-1596 
  "IRX1 MUTATED" "IRX1 WILD-TYPE" "IRX1 WILD-TYPE"   "IRX1 MUTATED" 
    TCGA-55-5899     TCGA-55-6543     TCGA-55-6642     TCGA-55-6712 
"IRX1 WILD-TYPE" "IRX1 WILD-TYPE" "IRX1 WILD-TYPE" "IRX1 WILD-TYPE" 
    TCGA-64-1676     TCGA-64-1677     TCGA-64-1678     TCGA-64-1680 
"IRX1 WILD-TYPE" "IRX1 WILD-TYPE" "IRX1 WILD-TYPE" "IRX1 WILD-TYPE" 
    TCGA-64-5774     TCGA-64-5775     TCGA-64-5778     TCGA-64-5779 
"IRX1 WILD-TYPE" "IRX1 WILD-TYPE" "IRX1 WILD-TYPE" "IRX1 WILD-TYPE" 
    TCGA-64-5781     TCGA-64-5815     TCGA-67-3770     TCGA-67-3771 
"IRX1 WILD-TYPE" "IRX1 WILD-TYPE" "IRX1 WILD-TYPE" "IRX1 WILD-TYPE" 
    TCGA-67-3772     TCGA-67-3773     TCGA-67-3774     TCGA-67-6215 
"IRX1 WILD-TYPE" "IRX1 WILD-TYPE" "IRX1 WILD-TYPE" "IRX1 WILD-TYPE" 
    TCGA-67-6216     TCGA-67-6217     TCGA-71-6725     TCGA-73-4658 
"IRX1 WILD-TYPE"   "IRX1 MUTATED" "IRX1 WILD-TYPE" "IRX1 WILD-TYPE" 
    TCGA-73-4659     TCGA-73-4662     TCGA-73-4666     TCGA-73-4668 
"IRX1 WILD-TYPE" "IRX1 WILD-TYPE" "IRX1 WILD-TYPE" "IRX1 WILD-TYPE" 
    TCGA-73-4670     TCGA-73-4675     TCGA-73-4676     TCGA-73-4677 
"IRX1 WILD-TYPE" "IRX1 WILD-TYPE" "IRX1 WILD-TYPE" "IRX1 WILD-TYPE" 
    TCGA-91-6828     TCGA-91-6829     TCGA-91-6831     TCGA-91-6835 
"IRX1 WILD-TYPE" "IRX1 WILD-TYPE"   "IRX1 MUTATED" "IRX1 WILD-TYPE" 
    TCGA-91-6836 
"IRX1 WILD-TYPE" 
    TCGA-05-4249     TCGA-05-4250     TCGA-05-4382     TCGA-05-4384 
"IRX1 WILD-TYPE" "IRX1 WILD-TYPE" "IRX1 WILD-TYPE" "IRX1 WILD-TYPE" 
    TCGA-05-4390     TCGA-05-4396     TCGA-05-4397     TCGA-05-4398 
"IRX1 WILD-TYPE" "IRX1 WILD-TYPE" "IRX1 WILD-TYPE" "IRX1 WILD-TYPE" 
    TCGA-05-4402     TCGA-05-4405     TCGA-05-4415     TCGA-05-4417 
"IRX1 WILD-TYPE" "IRX1 WILD-TYPE" "IRX1 WILD-TYPE" "IRX1 WILD-TYPE" 
    TCGA-05-4418     TCGA-05-4420     TCGA-05-4424     TCGA-05-4426 
"IRX1 WILD-TYPE" "IRX1 WILD-TYPE" "IRX1 WILD-TYPE" "IRX1 WILD-TYPE" 
    TCGA-05-4427     TCGA-05-4430     TCGA-05-4432     TCGA-05-4433 
"IRX1 WILD-TYPE" "IRX1 WILD-TYPE" "IRX1 WILD-TYPE" "IRX1 WILD-TYPE" 
    TCGA-05-4434     TCGA-05-5420     TCGA-05-5423     TCGA-05-5425 
"IRX1 WILD-TYPE" "IRX1 WILD-TYPE" "IRX1 WILD-TYPE" "IRX1 WILD-TYPE" 
    TCGA-05-5429     TCGA-05-5715     TCGA-35-3615     TCGA-35-4122 
"IRX1 WILD-TYPE" "IRX1 WILD-TYPE" "IRX1 WILD-TYPE" "IRX1 WILD-TYPE" 
    TCGA-35-4123     TCGA-35-5375     TCGA-38-4625     TCGA-38-4626 
"IRX1 WILD-TYPE" "IRX1 WILD-TYPE" "IRX1 WILD-TYPE" "IRX1 WILD-TYPE" 
    TCGA-38-4627     TCGA-38-4628     TCGA-38-4629     TCGA-38-4630 
"IRX1 WILD-TYPE" "IRX1 WILD-TYPE" "IRX1 WILD-TYPE" "IRX1 WILD-TYPE" 
    TCGA-38-4631     TCGA-38-4632     TCGA-38-6178     TCGA-44-2655 
"IRX1 WILD-TYPE" "IRX1 WILD-TYPE" "IRX1 WILD-TYPE" "IRX1 WILD-TYPE" 
    TCGA-44-2656     TCGA-44-2657     TCGA-44-2659     TCGA-44-2661 
"IRX1 WILD-TYPE" "IRX1 WILD-TYPE" "IRX1 WILD-TYPE" "IRX1 WILD-TYPE" 
    TCGA-44-2662     TCGA-44-2665     TCGA-44-2666     TCGA-44-2668 
"IRX1 WILD-TYPE" "IRX1 WILD-TYPE" "IRX1 WILD-TYPE" "IRX1 WILD-TYPE" 
    TCGA-44-3396     TCGA-44-3398     TCGA-44-3918     TCGA-44-3919 
"IRX1 WILD-TYPE" "IRX1 WILD-TYPE" "IRX1 WILD-TYPE" "IRX1 WILD-TYPE" 
    TCGA-44-4112     TCGA-44-5643     TCGA-44-5645     TCGA-44-6144 
"IRX1 WILD-TYPE" "IRX1 WILD-TYPE" "IRX1 WILD-TYPE" "IRX1 WILD-TYPE" 
    TCGA-44-6145     TCGA-44-6146     TCGA-44-6147     TCGA-44-6148 
"IRX1 WILD-TYPE" "IRX1 WILD-TYPE" "IRX1 WILD-TYPE" "IRX1 WILD-TYPE" 
    TCGA-44-6774     TCGA-44-6775     TCGA-44-6776     TCGA-44-6777 
"IRX1 WILD-TYPE" "IRX1 WILD-TYPE" "IRX1 WILD-TYPE"   "IRX1 MUTATED" 
    TCGA-44-6778     TCGA-44-6779     TCGA-49-4486     TCGA-49-4487 
"IRX1 WILD-TYPE" "IRX1 WILD-TYPE" "IRX1 WILD-TYPE" "IRX1 WILD-TYPE" 
    TCGA-49-4488     TCGA-49-4490     TCGA-49-4494     TCGA-49-4501 
"IRX1 WILD-TYPE" "IRX1 WILD-TYPE" "IRX1 WILD-TYPE" "IRX1 WILD-TYPE" 
    TCGA-49-4505     TCGA-49-4506     TCGA-49-4507     TCGA-49-4510 
"IRX1 WILD-TYPE" "IRX1 WILD-TYPE" "IRX1 WILD-TYPE" "IRX1 WILD-TYPE" 
    TCGA-49-4512     TCGA-49-4514     TCGA-49-6742     TCGA-49-6743 
"IRX1 WILD-TYPE" "IRX1 WILD-TYPE" "IRX1 WILD-TYPE" "IRX1 WILD-TYPE" 
    TCGA-49-6744     TCGA-49-6745     TCGA-50-5044     TCGA-50-5045 
"IRX1 WILD-TYPE" "IRX1 WILD-TYPE" "IRX1 WILD-TYPE" "IRX1 WILD-TYPE" 
    TCGA-50-5049     TCGA-50-5051     TCGA-50-5055     TCGA-50-5066 
"IRX1 WILD-TYPE" "IRX1 WILD-TYPE" "IRX1 WILD-TYPE" "IRX1 WILD-TYPE" 
    TCGA-50-5068     TCGA-50-5072     TCGA-50-5930     TCGA-50-5931 
"IRX1 WILD-TYPE" "IRX1 WILD-TYPE" "IRX1 WILD-TYPE" "IRX1 WILD-TYPE" 
    TCGA-50-5932     TCGA-50-5933     TCGA-50-5935     TCGA-50-5936 
"IRX1 WILD-TYPE" "IRX1 WILD-TYPE" "IRX1 WILD-TYPE" "IRX1 WILD-TYPE" 
    TCGA-50-5939     TCGA-50-5941     TCGA-50-5942     TCGA-50-5944 
"IRX1 WILD-TYPE" "IRX1 WILD-TYPE" "IRX1 WILD-TYPE" "IRX1 WILD-TYPE" 
    TCGA-50-5946     TCGA-50-6590     TCGA-50-6591     TCGA-50-6592 
"IRX1 WILD-TYPE" "IRX1 WILD-TYPE" "IRX1 WILD-TYPE" "IRX1 WILD-TYPE" 
    TCGA-50-6593     TCGA-50-6594     TCGA-50-6595     TCGA-50-6597 
"IRX1 WILD-TYPE" "IRX1 WILD-TYPE" "IRX1 WILD-TYPE" "IRX1 WILD-TYPE" 
    TCGA-55-1592     TCGA-55-1594     TCGA-55-1595     TCGA-55-1596 
  "IRX1 MUTATED" "IRX1 WILD-TYPE" "IRX1 WILD-TYPE"   "IRX1 MUTATED" 
    TCGA-55-5899     TCGA-55-6543     TCGA-55-6642     TCGA-55-6712 
"IRX1 WILD-TYPE" "IRX1 WILD-TYPE" "IRX1 WILD-TYPE" "IRX1 WILD-TYPE" 
    TCGA-64-1676     TCGA-64-1677     TCGA-64-1678     TCGA-64-1680 
"IRX1 WILD-TYPE" "IRX1 WILD-TYPE" "IRX1 WILD-TYPE" "IRX1 WILD-TYPE" 
    TCGA-64-5774     TCGA-64-5775     TCGA-64-5778     TCGA-64-5779 
"IRX1 WILD-TYPE" "IRX1 WILD-TYPE" "IRX1 WILD-TYPE" "IRX1 WILD-TYPE" 
    TCGA-64-5781     TCGA-64-5815     TCGA-67-3770     TCGA-67-3771 
"IRX1 WILD-TYPE" "IRX1 WILD-TYPE" "IRX1 WILD-TYPE" "IRX1 WILD-TYPE" 
    TCGA-67-3772     TCGA-67-3773     TCGA-67-3774     TCGA-67-6215 
"IRX1 WILD-TYPE" "IRX1 WILD-TYPE" "IRX1 WILD-TYPE" "IRX1 WILD-TYPE" 
    TCGA-67-6216     TCGA-67-6217     TCGA-71-6725     TCGA-73-4658 
"IRX1 WILD-TYPE"   "IRX1 MUTATED" "IRX1 WILD-TYPE" "IRX1 WILD-TYPE" 
    TCGA-73-4659     TCGA-73-4662     TCGA-73-4666     TCGA-73-4668 
"IRX1 WILD-TYPE" "IRX1 WILD-TYPE" "IRX1 WILD-TYPE" "IRX1 WILD-TYPE" 
    TCGA-73-4670     TCGA-73-4675     TCGA-73-4676     TCGA-73-4677 
"IRX1 WILD-TYPE" "IRX1 WILD-TYPE" "IRX1 WILD-TYPE" "IRX1 WILD-TYPE" 
    TCGA-91-6828     TCGA-91-6829     TCGA-91-6831     TCGA-91-6835 
"IRX1 WILD-TYPE" "IRX1 WILD-TYPE"   "IRX1 MUTATED" "IRX1 WILD-TYPE" 
    TCGA-91-6836 
"IRX1 WILD-TYPE" 
    TCGA-05-4249     TCGA-05-4250     TCGA-05-4382     TCGA-05-4384 
"IRX1 WILD-TYPE" "IRX1 WILD-TYPE" "IRX1 WILD-TYPE" "IRX1 WILD-TYPE" 
    TCGA-05-4390     TCGA-05-4396     TCGA-05-4397     TCGA-05-4398 
"IRX1 WILD-TYPE" "IRX1 WILD-TYPE" "IRX1 WILD-TYPE" "IRX1 WILD-TYPE" 
    TCGA-05-4402     TCGA-05-4405     TCGA-05-4415     TCGA-05-4417 
"IRX1 WILD-TYPE" "IRX1 WILD-TYPE" "IRX1 WILD-TYPE" "IRX1 WILD-TYPE" 
    TCGA-05-4418     TCGA-05-4420     TCGA-05-4424     TCGA-05-4426 
"IRX1 WILD-TYPE" "IRX1 WILD-TYPE" "IRX1 WILD-TYPE" "IRX1 WILD-TYPE" 
    TCGA-05-4427     TCGA-05-4430     TCGA-05-4432     TCGA-05-4433 
"IRX1 WILD-TYPE" "IRX1 WILD-TYPE" "IRX1 WILD-TYPE" "IRX1 WILD-TYPE" 
    TCGA-05-4434     TCGA-05-5420     TCGA-05-5423     TCGA-05-5425 
"IRX1 WILD-TYPE" "IRX1 WILD-TYPE" "IRX1 WILD-TYPE" "IRX1 WILD-TYPE" 
    TCGA-05-5429     TCGA-05-5715     TCGA-35-3615     TCGA-35-4122 
"IRX1 WILD-TYPE" "IRX1 WILD-TYPE" "IRX1 WILD-TYPE" "IRX1 WILD-TYPE" 
    TCGA-35-4123     TCGA-35-5375     TCGA-38-4625     TCGA-38-4626 
"IRX1 WILD-TYPE" "IRX1 WILD-TYPE" "IRX1 WILD-TYPE" "IRX1 WILD-TYPE" 
    TCGA-38-4627     TCGA-38-4628     TCGA-38-4629     TCGA-38-4630 
"IRX1 WILD-TYPE" "IRX1 WILD-TYPE" "IRX1 WILD-TYPE" "IRX1 WILD-TYPE" 
    TCGA-38-4631     TCGA-38-4632     TCGA-38-6178     TCGA-44-2655 
"IRX1 WILD-TYPE" "IRX1 WILD-TYPE" "IRX1 WILD-TYPE" "IRX1 WILD-TYPE" 
    TCGA-44-2656     TCGA-44-2657     TCGA-44-2659     TCGA-44-2661 
"IRX1 WILD-TYPE" "IRX1 WILD-TYPE" "IRX1 WILD-TYPE" "IRX1 WILD-TYPE" 
    TCGA-44-2662     TCGA-44-2665     TCGA-44-2666     TCGA-44-2668 
"IRX1 WILD-TYPE" "IRX1 WILD-TYPE" "IRX1 WILD-TYPE" "IRX1 WILD-TYPE" 
    TCGA-44-3396     TCGA-44-3398     TCGA-44-3918     TCGA-44-3919 
"IRX1 WILD-TYPE" "IRX1 WILD-TYPE" "IRX1 WILD-TYPE" "IRX1 WILD-TYPE" 
    TCGA-44-4112     TCGA-44-5643     TCGA-44-5645     TCGA-44-6144 
"IRX1 WILD-TYPE" "IRX1 WILD-TYPE" "IRX1 WILD-TYPE" "IRX1 WILD-TYPE" 
    TCGA-44-6145     TCGA-44-6146     TCGA-44-6147     TCGA-44-6148 
"IRX1 WILD-TYPE" "IRX1 WILD-TYPE" "IRX1 WILD-TYPE" "IRX1 WILD-TYPE" 
    TCGA-44-6774     TCGA-44-6775     TCGA-44-6776     TCGA-44-6777 
"IRX1 WILD-TYPE" "IRX1 WILD-TYPE" "IRX1 WILD-TYPE"   "IRX1 MUTATED" 
    TCGA-44-6778     TCGA-44-6779     TCGA-49-4486     TCGA-49-4487 
"IRX1 WILD-TYPE" "IRX1 WILD-TYPE" "IRX1 WILD-TYPE" "IRX1 WILD-TYPE" 
    TCGA-49-4488     TCGA-49-4490     TCGA-49-4494     TCGA-49-4501 
"IRX1 WILD-TYPE" "IRX1 WILD-TYPE" "IRX1 WILD-TYPE" "IRX1 WILD-TYPE" 
    TCGA-49-4505     TCGA-49-4506     TCGA-49-4507     TCGA-49-4510 
"IRX1 WILD-TYPE" "IRX1 WILD-TYPE" "IRX1 WILD-TYPE" "IRX1 WILD-TYPE" 
    TCGA-49-4512     TCGA-49-4514     TCGA-49-6742     TCGA-49-6743 
"IRX1 WILD-TYPE" "IRX1 WILD-TYPE" "IRX1 WILD-TYPE" "IRX1 WILD-TYPE" 
    TCGA-49-6744     TCGA-49-6745     TCGA-50-5044     TCGA-50-5045 
"IRX1 WILD-TYPE" "IRX1 WILD-TYPE" "IRX1 WILD-TYPE" "IRX1 WILD-TYPE" 
    TCGA-50-5049     TCGA-50-5051     TCGA-50-5055     TCGA-50-5066 
"IRX1 WILD-TYPE" "IRX1 WILD-TYPE" "IRX1 WILD-TYPE" "IRX1 WILD-TYPE" 
    TCGA-50-5068     TCGA-50-5072     TCGA-50-5930     TCGA-50-5931 
"IRX1 WILD-TYPE" "IRX1 WILD-TYPE" "IRX1 WILD-TYPE" "IRX1 WILD-TYPE" 
    TCGA-50-5932     TCGA-50-5933     TCGA-50-5935     TCGA-50-5936 
"IRX1 WILD-TYPE" "IRX1 WILD-TYPE" "IRX1 WILD-TYPE" "IRX1 WILD-TYPE" 
    TCGA-50-5939     TCGA-50-5941     TCGA-50-5942     TCGA-50-5944 
"IRX1 WILD-TYPE" "IRX1 WILD-TYPE" "IRX1 WILD-TYPE" "IRX1 WILD-TYPE" 
    TCGA-50-5946     TCGA-50-6590     TCGA-50-6591     TCGA-50-6592 
"IRX1 WILD-TYPE" "IRX1 WILD-TYPE" "IRX1 WILD-TYPE" "IRX1 WILD-TYPE" 
    TCGA-50-6593     TCGA-50-6594     TCGA-50-6595     TCGA-50-6597 
"IRX1 WILD-TYPE" "IRX1 WILD-TYPE" "IRX1 WILD-TYPE" "IRX1 WILD-TYPE" 
    TCGA-55-1592     TCGA-55-1594     TCGA-55-1595     TCGA-55-1596 
  "IRX1 MUTATED" "IRX1 WILD-TYPE" "IRX1 WILD-TYPE"   "IRX1 MUTATED" 
    TCGA-55-5899     TCGA-55-6543     TCGA-55-6642     TCGA-55-6712 
"IRX1 WILD-TYPE" "IRX1 WILD-TYPE" "IRX1 WILD-TYPE" "IRX1 WILD-TYPE" 
    TCGA-64-1676     TCGA-64-1677     TCGA-64-1678     TCGA-64-1680 
"IRX1 WILD-TYPE" "IRX1 WILD-TYPE" "IRX1 WILD-TYPE" "IRX1 WILD-TYPE" 
    TCGA-64-5774     TCGA-64-5775     TCGA-64-5778     TCGA-64-5779 
"IRX1 WILD-TYPE" "IRX1 WILD-TYPE" "IRX1 WILD-TYPE" "IRX1 WILD-TYPE" 
    TCGA-64-5781     TCGA-64-5815     TCGA-67-3770     TCGA-67-3771 
"IRX1 WILD-TYPE" "IRX1 WILD-TYPE" "IRX1 WILD-TYPE" "IRX1 WILD-TYPE" 
    TCGA-67-3772     TCGA-67-3773     TCGA-67-3774     TCGA-67-6215 
"IRX1 WILD-TYPE" "IRX1 WILD-TYPE" "IRX1 WILD-TYPE" "IRX1 WILD-TYPE" 
    TCGA-67-6216     TCGA-67-6217     TCGA-71-6725     TCGA-73-4658 
"IRX1 WILD-TYPE"   "IRX1 MUTATED" "IRX1 WILD-TYPE" "IRX1 WILD-TYPE" 
    TCGA-73-4659     TCGA-73-4662     TCGA-73-4666     TCGA-73-4668 
"IRX1 WILD-TYPE" "IRX1 WILD-TYPE" "IRX1 WILD-TYPE" "IRX1 WILD-TYPE" 
    TCGA-73-4670     TCGA-73-4675     TCGA-73-4676     TCGA-73-4677 
"IRX1 WILD-TYPE" "IRX1 WILD-TYPE" "IRX1 WILD-TYPE" "IRX1 WILD-TYPE" 
    TCGA-91-6828     TCGA-91-6829     TCGA-91-6831     TCGA-91-6835 
"IRX1 WILD-TYPE" "IRX1 WILD-TYPE"   "IRX1 MUTATED" "IRX1 WILD-TYPE" 
    TCGA-91-6836 
"IRX1 WILD-TYPE" 
[1] "hr=" "1.1"
D102V2, continuous
D102V3, binary
[1] "tbl2"
                cls
clus             [,1] [,2]
  IRX1 MUTATED      2    5
  IRX1 WILD-TYPE   91   74
        clus
vv       IRX1 MUTATED IRX1 WILD-TYPE
  FEMALE            2             91
  MALE              5             74
D102V4, continuous
D102V5, multiclass
D102V6, multiclass
    clus
vv   IRX1 MUTATED IRX1 WILD-TYPE
  T1            1             40
  T2            6            102
  T3            0             14
  T4            0              8
D102V7, multiclass
       clus
vv      IRX1 MUTATED IRX1 WILD-TYPE
  N0               3             92
  N1               3             34
  N2+N3            0             35
D102V8, multiclass
    clus
vv   IRX1 MUTATED IRX1 WILD-TYPE
  M0            5            132
  M1            0              9
  MX            2             20
D102V9, multiclass
     clus
vv    IRX1 MUTATED IRX1 WILD-TYPE
  I              4             84
  II             3             30
  III            0             39
  IV             0              9
D102V10, binary
[1] "tbl2"
                cls
clus             [,1] [,2]
  IRX1 MUTATED      1    6
  IRX1 WILD-TYPE   15  150
     clus
vv    IRX1 MUTATED IRX1 WILD-TYPE
  NO             1             15
  YES            6            150
D102V11, continuous
D102V12, continuous
D102V13, multiclass
                                             clus
vv                                            IRX1 MUTATED IRX1 WILD-TYPE
  CURRENT REFORMED SMOKER FOR < OR = 15 YEARS            3             59
  CURRENT REFORMED SMOKER FOR > 15 YEARS                 2             44
  CURRENT SMOKER                                         2             26
  LIFELONG NON-SMOKER                                    0             24
D102V14, continuous

Clustering(103) Variable = SAMD7 MUTATION ANALYSIS
D103V1, survival
                 sevent
clus2              0  1
  SAMD7 MUTATED    4  1
  SAMD7 WILD-TYPE 95 49
  SAMD7 MUTATED SAMD7 WILD-TYPE 
              5             144 
  SAMD7 MUTATED SAMD7 WILD-TYPE 
              1              49 
$`SAMD7 MUTATED`
TCGA-05-4390 TCGA-05-5425 TCGA-35-5375 TCGA-49-4505 TCGA-49-6743 
       37.02         2.96         8.68        14.07        12.13 

$`SAMD7 WILD-TYPE`
TCGA-05-4249 TCGA-05-4250 TCGA-05-4382 TCGA-05-4384 TCGA-05-4396 TCGA-05-4397 
       38.07         3.98        19.92        14.01         9.96        24.03 
TCGA-05-4398 TCGA-05-4402 TCGA-05-4405 TCGA-05-4415 TCGA-05-4417 TCGA-05-4418 
       47.05         8.02        20.05         2.96        14.93         8.98 
TCGA-05-4420 TCGA-05-4424 TCGA-05-4426 TCGA-05-4427 TCGA-05-4430 TCGA-05-4432 
       29.95        30.02        26.01        26.01        25.02        25.02 
TCGA-05-4433 TCGA-05-4434 TCGA-05-5420 TCGA-05-5423 TCGA-05-5429 TCGA-05-5715 
       24.00        15.02         1.02         4.96         0.99         2.04 
TCGA-35-3615 TCGA-35-4122 TCGA-35-4123 TCGA-38-4625 TCGA-38-4626 TCGA-38-4627 
        0.46         7.36         5.95        47.61        85.32        37.71 
TCGA-38-4628 TCGA-38-4629 TCGA-38-4630 TCGA-38-4631 TCGA-38-4632 TCGA-38-6178 
       49.02        28.37        35.28        11.64        44.61         5.19 
TCGA-44-2655 TCGA-44-2656 TCGA-44-2657 TCGA-44-2659 TCGA-44-2661 TCGA-44-2662 
       18.87        19.10        13.15        17.39         3.39        15.78 
TCGA-44-2665 TCGA-44-2666 TCGA-44-2668 TCGA-44-3396 TCGA-44-3398 TCGA-44-3918 
       13.15         3.19         8.09        10.22         8.32         6.44 
TCGA-44-3919 TCGA-44-4112 TCGA-44-5643 TCGA-44-5645 TCGA-44-6144 TCGA-44-6145 
        6.21         4.60         3.48         6.84         0.30         3.35 
TCGA-44-6146 TCGA-44-6147 TCGA-44-6148 TCGA-44-6774 TCGA-44-6775 TCGA-44-6776 
        9.93         7.76         3.12         5.42         2.70        63.72 
TCGA-44-6777 TCGA-44-6778 TCGA-44-6779 TCGA-49-4486 TCGA-49-4487 TCGA-49-4488 
       32.45        36.49        16.41        76.21        28.11        28.57 
TCGA-49-4490 TCGA-49-4494 TCGA-49-4501 TCGA-49-4506 TCGA-49-4507 TCGA-49-4510 
       12.66        35.54        46.72        32.84         8.81        29.46 
TCGA-49-4512 TCGA-49-4514 TCGA-49-6742 TCGA-49-6744 TCGA-49-6745 TCGA-50-5044 
       29.75        43.20        15.02        12.99         4.93        20.48 
TCGA-50-5045 TCGA-50-5049 TCGA-50-5051 TCGA-50-5055 TCGA-50-5066 TCGA-50-5068 
       71.47        48.82        14.96        25.81         9.76        49.28 
TCGA-50-5072 TCGA-50-5930 TCGA-50-5931 TCGA-50-5932 TCGA-50-5933 TCGA-50-5935 
        8.05         9.27         8.78        35.87        77.88        21.47 
TCGA-50-5936 TCGA-50-5939 TCGA-50-5941 TCGA-50-5942 TCGA-50-5944 TCGA-50-5946 
        8.45        15.12         9.37         4.44        12.26        11.47 
TCGA-50-6590 TCGA-50-6591 TCGA-50-6592 TCGA-50-6593 TCGA-50-6594 TCGA-50-6595 
       42.31         3.88        25.51        11.05        12.16         6.21 
TCGA-50-6597 TCGA-55-1592 TCGA-55-1594 TCGA-55-1595 TCGA-55-1596 TCGA-55-5899 
       33.37        23.05        38.73        48.62        45.17         2.86 
TCGA-55-6543 TCGA-55-6642 TCGA-55-6712 TCGA-64-1676 TCGA-64-1677 TCGA-64-1678 
        0.07        32.61         0.79        56.81        20.65        39.09 
TCGA-64-1680 TCGA-64-5774 TCGA-64-5775 TCGA-64-5778 TCGA-64-5779 TCGA-64-5781 
       37.02        83.84         0.10        30.44        16.67        39.52 
TCGA-64-5815 TCGA-67-3770 TCGA-67-3771 TCGA-67-3772 TCGA-67-3773 TCGA-67-3774 
        7.33         0.99         1.97         0.59         2.04         0.59 
TCGA-67-6215 TCGA-67-6216 TCGA-67-6217 TCGA-71-6725 TCGA-73-4658 TCGA-73-4659 
        0.89         0.69        13.87         2.01        52.57        23.38 
TCGA-73-4662 TCGA-73-4666 TCGA-73-4668 TCGA-73-4670 TCGA-73-4675 TCGA-73-4676 
       29.95        20.28        15.35         0.46         1.32         4.01 
TCGA-73-4677 TCGA-91-6828 TCGA-91-6829 TCGA-91-6831 TCGA-91-6835 TCGA-91-6836 
        1.25         1.22        41.33         1.28         1.15         0.36 

  SAMD7 MUTATED SAMD7 WILD-TYPE 
           2.96            0.07 
  SAMD7 MUTATED SAMD7 WILD-TYPE 
          37.02           85.32 
  SAMD7 MUTATED SAMD7 WILD-TYPE 
          12.13           13.94 
[1] "3.0 - 37.0 (12.1)" "0.1 - 85.3 (13.9)"
     TCGA-05-4249      TCGA-05-4250      TCGA-05-4382      TCGA-05-4384 
"SAMD7 WILD-TYPE" "SAMD7 WILD-TYPE" "SAMD7 WILD-TYPE" "SAMD7 WILD-TYPE" 
     TCGA-05-4390      TCGA-05-4396      TCGA-05-4397      TCGA-05-4398 
  "SAMD7 MUTATED" "SAMD7 WILD-TYPE" "SAMD7 WILD-TYPE" "SAMD7 WILD-TYPE" 
     TCGA-05-4402      TCGA-05-4405      TCGA-05-4415      TCGA-05-4417 
"SAMD7 WILD-TYPE" "SAMD7 WILD-TYPE" "SAMD7 WILD-TYPE" "SAMD7 WILD-TYPE" 
     TCGA-05-4418      TCGA-05-4420      TCGA-05-4424      TCGA-05-4426 
"SAMD7 WILD-TYPE" "SAMD7 WILD-TYPE" "SAMD7 WILD-TYPE" "SAMD7 WILD-TYPE" 
     TCGA-05-4427      TCGA-05-4430      TCGA-05-4432      TCGA-05-4433 
"SAMD7 WILD-TYPE" "SAMD7 WILD-TYPE" "SAMD7 WILD-TYPE" "SAMD7 WILD-TYPE" 
     TCGA-05-4434      TCGA-05-5420      TCGA-05-5423      TCGA-05-5425 
"SAMD7 WILD-TYPE" "SAMD7 WILD-TYPE" "SAMD7 WILD-TYPE"   "SAMD7 MUTATED" 
     TCGA-05-5429      TCGA-05-5715      TCGA-35-3615      TCGA-35-4122 
"SAMD7 WILD-TYPE" "SAMD7 WILD-TYPE" "SAMD7 WILD-TYPE" "SAMD7 WILD-TYPE" 
     TCGA-35-4123      TCGA-35-5375      TCGA-38-4625      TCGA-38-4626 
"SAMD7 WILD-TYPE"   "SAMD7 MUTATED" "SAMD7 WILD-TYPE" "SAMD7 WILD-TYPE" 
     TCGA-38-4627      TCGA-38-4628      TCGA-38-4629      TCGA-38-4630 
"SAMD7 WILD-TYPE" "SAMD7 WILD-TYPE" "SAMD7 WILD-TYPE" "SAMD7 WILD-TYPE" 
     TCGA-38-4631      TCGA-38-4632      TCGA-38-6178      TCGA-44-2655 
"SAMD7 WILD-TYPE" "SAMD7 WILD-TYPE" "SAMD7 WILD-TYPE" "SAMD7 WILD-TYPE" 
     TCGA-44-2656      TCGA-44-2657      TCGA-44-2659      TCGA-44-2661 
"SAMD7 WILD-TYPE" "SAMD7 WILD-TYPE" "SAMD7 WILD-TYPE" "SAMD7 WILD-TYPE" 
     TCGA-44-2662      TCGA-44-2665      TCGA-44-2666      TCGA-44-2668 
"SAMD7 WILD-TYPE" "SAMD7 WILD-TYPE" "SAMD7 WILD-TYPE" "SAMD7 WILD-TYPE" 
     TCGA-44-3396      TCGA-44-3398      TCGA-44-3918      TCGA-44-3919 
"SAMD7 WILD-TYPE" "SAMD7 WILD-TYPE" "SAMD7 WILD-TYPE" "SAMD7 WILD-TYPE" 
     TCGA-44-4112      TCGA-44-5643      TCGA-44-5645      TCGA-44-6144 
"SAMD7 WILD-TYPE" "SAMD7 WILD-TYPE" "SAMD7 WILD-TYPE" "SAMD7 WILD-TYPE" 
     TCGA-44-6145      TCGA-44-6146      TCGA-44-6147      TCGA-44-6148 
"SAMD7 WILD-TYPE" "SAMD7 WILD-TYPE" "SAMD7 WILD-TYPE" "SAMD7 WILD-TYPE" 
     TCGA-44-6774      TCGA-44-6775      TCGA-44-6776      TCGA-44-6777 
"SAMD7 WILD-TYPE" "SAMD7 WILD-TYPE" "SAMD7 WILD-TYPE" "SAMD7 WILD-TYPE" 
     TCGA-44-6778      TCGA-44-6779      TCGA-49-4486      TCGA-49-4487 
"SAMD7 WILD-TYPE" "SAMD7 WILD-TYPE" "SAMD7 WILD-TYPE" "SAMD7 WILD-TYPE" 
     TCGA-49-4488      TCGA-49-4490      TCGA-49-4494      TCGA-49-4501 
"SAMD7 WILD-TYPE" "SAMD7 WILD-TYPE" "SAMD7 WILD-TYPE" "SAMD7 WILD-TYPE" 
     TCGA-49-4505      TCGA-49-4506      TCGA-49-4507      TCGA-49-4510 
  "SAMD7 MUTATED" "SAMD7 WILD-TYPE" "SAMD7 WILD-TYPE" "SAMD7 WILD-TYPE" 
     TCGA-49-4512      TCGA-49-4514      TCGA-49-6742      TCGA-49-6743 
"SAMD7 WILD-TYPE" "SAMD7 WILD-TYPE" "SAMD7 WILD-TYPE"   "SAMD7 MUTATED" 
     TCGA-49-6744      TCGA-49-6745      TCGA-50-5044      TCGA-50-5045 
"SAMD7 WILD-TYPE" "SAMD7 WILD-TYPE" "SAMD7 WILD-TYPE" "SAMD7 WILD-TYPE" 
     TCGA-50-5049      TCGA-50-5051      TCGA-50-5055      TCGA-50-5066 
"SAMD7 WILD-TYPE" "SAMD7 WILD-TYPE" "SAMD7 WILD-TYPE" "SAMD7 WILD-TYPE" 
     TCGA-50-5068      TCGA-50-5072      TCGA-50-5930      TCGA-50-5931 
"SAMD7 WILD-TYPE" "SAMD7 WILD-TYPE" "SAMD7 WILD-TYPE" "SAMD7 WILD-TYPE" 
     TCGA-50-5932      TCGA-50-5933      TCGA-50-5935      TCGA-50-5936 
"SAMD7 WILD-TYPE" "SAMD7 WILD-TYPE" "SAMD7 WILD-TYPE" "SAMD7 WILD-TYPE" 
     TCGA-50-5939      TCGA-50-5941      TCGA-50-5942      TCGA-50-5944 
"SAMD7 WILD-TYPE" "SAMD7 WILD-TYPE" "SAMD7 WILD-TYPE" "SAMD7 WILD-TYPE" 
     TCGA-50-5946      TCGA-50-6590      TCGA-50-6591      TCGA-50-6592 
"SAMD7 WILD-TYPE" "SAMD7 WILD-TYPE" "SAMD7 WILD-TYPE" "SAMD7 WILD-TYPE" 
     TCGA-50-6593      TCGA-50-6594      TCGA-50-6595      TCGA-50-6597 
"SAMD7 WILD-TYPE" "SAMD7 WILD-TYPE" "SAMD7 WILD-TYPE" "SAMD7 WILD-TYPE" 
     TCGA-55-1592      TCGA-55-1594      TCGA-55-1595      TCGA-55-1596 
"SAMD7 WILD-TYPE" "SAMD7 WILD-TYPE" "SAMD7 WILD-TYPE" "SAMD7 WILD-TYPE" 
     TCGA-55-5899      TCGA-55-6543      TCGA-55-6642      TCGA-55-6712 
"SAMD7 WILD-TYPE" "SAMD7 WILD-TYPE" "SAMD7 WILD-TYPE" "SAMD7 WILD-TYPE" 
     TCGA-64-1676      TCGA-64-1677      TCGA-64-1678      TCGA-64-1680 
"SAMD7 WILD-TYPE" "SAMD7 WILD-TYPE" "SAMD7 WILD-TYPE" "SAMD7 WILD-TYPE" 
     TCGA-64-5774      TCGA-64-5775      TCGA-64-5778      TCGA-64-5779 
"SAMD7 WILD-TYPE" "SAMD7 WILD-TYPE" "SAMD7 WILD-TYPE" "SAMD7 WILD-TYPE" 
     TCGA-64-5781      TCGA-64-5815      TCGA-67-3770      TCGA-67-3771 
"SAMD7 WILD-TYPE" "SAMD7 WILD-TYPE" "SAMD7 WILD-TYPE" "SAMD7 WILD-TYPE" 
     TCGA-67-3772      TCGA-67-3773      TCGA-67-3774      TCGA-67-6215 
"SAMD7 WILD-TYPE" "SAMD7 WILD-TYPE" "SAMD7 WILD-TYPE" "SAMD7 WILD-TYPE" 
     TCGA-67-6216      TCGA-67-6217      TCGA-71-6725      TCGA-73-4658 
"SAMD7 WILD-TYPE" "SAMD7 WILD-TYPE" "SAMD7 WILD-TYPE" "SAMD7 WILD-TYPE" 
     TCGA-73-4659      TCGA-73-4662      TCGA-73-4666      TCGA-73-4668 
"SAMD7 WILD-TYPE" "SAMD7 WILD-TYPE" "SAMD7 WILD-TYPE" "SAMD7 WILD-TYPE" 
     TCGA-73-4670      TCGA-73-4675      TCGA-73-4676      TCGA-73-4677 
"SAMD7 WILD-TYPE" "SAMD7 WILD-TYPE" "SAMD7 WILD-TYPE" "SAMD7 WILD-TYPE" 
     TCGA-91-6828      TCGA-91-6829      TCGA-91-6831      TCGA-91-6835 
"SAMD7 WILD-TYPE" "SAMD7 WILD-TYPE" "SAMD7 WILD-TYPE" "SAMD7 WILD-TYPE" 
     TCGA-91-6836 
"SAMD7 WILD-TYPE" 
     TCGA-05-4249      TCGA-05-4250      TCGA-05-4382      TCGA-05-4384 
"SAMD7 WILD-TYPE" "SAMD7 WILD-TYPE" "SAMD7 WILD-TYPE" "SAMD7 WILD-TYPE" 
     TCGA-05-4390      TCGA-05-4396      TCGA-05-4397      TCGA-05-4398 
  "SAMD7 MUTATED" "SAMD7 WILD-TYPE" "SAMD7 WILD-TYPE" "SAMD7 WILD-TYPE" 
     TCGA-05-4402      TCGA-05-4405      TCGA-05-4415      TCGA-05-4417 
"SAMD7 WILD-TYPE" "SAMD7 WILD-TYPE" "SAMD7 WILD-TYPE" "SAMD7 WILD-TYPE" 
     TCGA-05-4418      TCGA-05-4420      TCGA-05-4424      TCGA-05-4426 
"SAMD7 WILD-TYPE" "SAMD7 WILD-TYPE" "SAMD7 WILD-TYPE" "SAMD7 WILD-TYPE" 
     TCGA-05-4427      TCGA-05-4430      TCGA-05-4432      TCGA-05-4433 
"SAMD7 WILD-TYPE" "SAMD7 WILD-TYPE" "SAMD7 WILD-TYPE" "SAMD7 WILD-TYPE" 
     TCGA-05-4434      TCGA-05-5420      TCGA-05-5423      TCGA-05-5425 
"SAMD7 WILD-TYPE" "SAMD7 WILD-TYPE" "SAMD7 WILD-TYPE"   "SAMD7 MUTATED" 
     TCGA-05-5429      TCGA-05-5715      TCGA-35-3615      TCGA-35-4122 
"SAMD7 WILD-TYPE" "SAMD7 WILD-TYPE" "SAMD7 WILD-TYPE" "SAMD7 WILD-TYPE" 
     TCGA-35-4123      TCGA-35-5375      TCGA-38-4625      TCGA-38-4626 
"SAMD7 WILD-TYPE"   "SAMD7 MUTATED" "SAMD7 WILD-TYPE" "SAMD7 WILD-TYPE" 
     TCGA-38-4627      TCGA-38-4628      TCGA-38-4629      TCGA-38-4630 
"SAMD7 WILD-TYPE" "SAMD7 WILD-TYPE" "SAMD7 WILD-TYPE" "SAMD7 WILD-TYPE" 
     TCGA-38-4631      TCGA-38-4632      TCGA-38-6178      TCGA-44-2655 
"SAMD7 WILD-TYPE" "SAMD7 WILD-TYPE" "SAMD7 WILD-TYPE" "SAMD7 WILD-TYPE" 
     TCGA-44-2656      TCGA-44-2657      TCGA-44-2659      TCGA-44-2661 
"SAMD7 WILD-TYPE" "SAMD7 WILD-TYPE" "SAMD7 WILD-TYPE" "SAMD7 WILD-TYPE" 
     TCGA-44-2662      TCGA-44-2665      TCGA-44-2666      TCGA-44-2668 
"SAMD7 WILD-TYPE" "SAMD7 WILD-TYPE" "SAMD7 WILD-TYPE" "SAMD7 WILD-TYPE" 
     TCGA-44-3396      TCGA-44-3398      TCGA-44-3918      TCGA-44-3919 
"SAMD7 WILD-TYPE" "SAMD7 WILD-TYPE" "SAMD7 WILD-TYPE" "SAMD7 WILD-TYPE" 
     TCGA-44-4112      TCGA-44-5643      TCGA-44-5645      TCGA-44-6144 
"SAMD7 WILD-TYPE" "SAMD7 WILD-TYPE" "SAMD7 WILD-TYPE" "SAMD7 WILD-TYPE" 
     TCGA-44-6145      TCGA-44-6146      TCGA-44-6147      TCGA-44-6148 
"SAMD7 WILD-TYPE" "SAMD7 WILD-TYPE" "SAMD7 WILD-TYPE" "SAMD7 WILD-TYPE" 
     TCGA-44-6774      TCGA-44-6775      TCGA-44-6776      TCGA-44-6777 
"SAMD7 WILD-TYPE" "SAMD7 WILD-TYPE" "SAMD7 WILD-TYPE" "SAMD7 WILD-TYPE" 
     TCGA-44-6778      TCGA-44-6779      TCGA-49-4486      TCGA-49-4487 
"SAMD7 WILD-TYPE" "SAMD7 WILD-TYPE" "SAMD7 WILD-TYPE" "SAMD7 WILD-TYPE" 
     TCGA-49-4488      TCGA-49-4490      TCGA-49-4494      TCGA-49-4501 
"SAMD7 WILD-TYPE" "SAMD7 WILD-TYPE" "SAMD7 WILD-TYPE" "SAMD7 WILD-TYPE" 
     TCGA-49-4505      TCGA-49-4506      TCGA-49-4507      TCGA-49-4510 
  "SAMD7 MUTATED" "SAMD7 WILD-TYPE" "SAMD7 WILD-TYPE" "SAMD7 WILD-TYPE" 
     TCGA-49-4512      TCGA-49-4514      TCGA-49-6742      TCGA-49-6743 
"SAMD7 WILD-TYPE" "SAMD7 WILD-TYPE" "SAMD7 WILD-TYPE"   "SAMD7 MUTATED" 
     TCGA-49-6744      TCGA-49-6745      TCGA-50-5044      TCGA-50-5045 
"SAMD7 WILD-TYPE" "SAMD7 WILD-TYPE" "SAMD7 WILD-TYPE" "SAMD7 WILD-TYPE" 
     TCGA-50-5049      TCGA-50-5051      TCGA-50-5055      TCGA-50-5066 
"SAMD7 WILD-TYPE" "SAMD7 WILD-TYPE" "SAMD7 WILD-TYPE" "SAMD7 WILD-TYPE" 
     TCGA-50-5068      TCGA-50-5072      TCGA-50-5930      TCGA-50-5931 
"SAMD7 WILD-TYPE" "SAMD7 WILD-TYPE" "SAMD7 WILD-TYPE" "SAMD7 WILD-TYPE" 
     TCGA-50-5932      TCGA-50-5933      TCGA-50-5935      TCGA-50-5936 
"SAMD7 WILD-TYPE" "SAMD7 WILD-TYPE" "SAMD7 WILD-TYPE" "SAMD7 WILD-TYPE" 
     TCGA-50-5939      TCGA-50-5941      TCGA-50-5942      TCGA-50-5944 
"SAMD7 WILD-TYPE" "SAMD7 WILD-TYPE" "SAMD7 WILD-TYPE" "SAMD7 WILD-TYPE" 
     TCGA-50-5946      TCGA-50-6590      TCGA-50-6591      TCGA-50-6592 
"SAMD7 WILD-TYPE" "SAMD7 WILD-TYPE" "SAMD7 WILD-TYPE" "SAMD7 WILD-TYPE" 
     TCGA-50-6593      TCGA-50-6594      TCGA-50-6595      TCGA-50-6597 
"SAMD7 WILD-TYPE" "SAMD7 WILD-TYPE" "SAMD7 WILD-TYPE" "SAMD7 WILD-TYPE" 
     TCGA-55-1592      TCGA-55-1594      TCGA-55-1595      TCGA-55-1596 
"SAMD7 WILD-TYPE" "SAMD7 WILD-TYPE" "SAMD7 WILD-TYPE" "SAMD7 WILD-TYPE" 
     TCGA-55-5899      TCGA-55-6543      TCGA-55-6642      TCGA-55-6712 
"SAMD7 WILD-TYPE" "SAMD7 WILD-TYPE" "SAMD7 WILD-TYPE" "SAMD7 WILD-TYPE" 
     TCGA-64-1676      TCGA-64-1677      TCGA-64-1678      TCGA-64-1680 
"SAMD7 WILD-TYPE" "SAMD7 WILD-TYPE" "SAMD7 WILD-TYPE" "SAMD7 WILD-TYPE" 
     TCGA-64-5774      TCGA-64-5775      TCGA-64-5778      TCGA-64-5779 
"SAMD7 WILD-TYPE" "SAMD7 WILD-TYPE" "SAMD7 WILD-TYPE" "SAMD7 WILD-TYPE" 
     TCGA-64-5781      TCGA-64-5815      TCGA-67-3770      TCGA-67-3771 
"SAMD7 WILD-TYPE" "SAMD7 WILD-TYPE" "SAMD7 WILD-TYPE" "SAMD7 WILD-TYPE" 
     TCGA-67-3772      TCGA-67-3773      TCGA-67-3774      TCGA-67-6215 
"SAMD7 WILD-TYPE" "SAMD7 WILD-TYPE" "SAMD7 WILD-TYPE" "SAMD7 WILD-TYPE" 
     TCGA-67-6216      TCGA-67-6217      TCGA-71-6725      TCGA-73-4658 
"SAMD7 WILD-TYPE" "SAMD7 WILD-TYPE" "SAMD7 WILD-TYPE" "SAMD7 WILD-TYPE" 
     TCGA-73-4659      TCGA-73-4662      TCGA-73-4666      TCGA-73-4668 
"SAMD7 WILD-TYPE" "SAMD7 WILD-TYPE" "SAMD7 WILD-TYPE" "SAMD7 WILD-TYPE" 
     TCGA-73-4670      TCGA-73-4675      TCGA-73-4676      TCGA-73-4677 
"SAMD7 WILD-TYPE" "SAMD7 WILD-TYPE" "SAMD7 WILD-TYPE" "SAMD7 WILD-TYPE" 
     TCGA-91-6828      TCGA-91-6829      TCGA-91-6831      TCGA-91-6835 
"SAMD7 WILD-TYPE" "SAMD7 WILD-TYPE" "SAMD7 WILD-TYPE" "SAMD7 WILD-TYPE" 
     TCGA-91-6836 
"SAMD7 WILD-TYPE" 
     TCGA-05-4249      TCGA-05-4250      TCGA-05-4382      TCGA-05-4384 
"SAMD7 WILD-TYPE" "SAMD7 WILD-TYPE" "SAMD7 WILD-TYPE" "SAMD7 WILD-TYPE" 
     TCGA-05-4390      TCGA-05-4396      TCGA-05-4397      TCGA-05-4398 
  "SAMD7 MUTATED" "SAMD7 WILD-TYPE" "SAMD7 WILD-TYPE" "SAMD7 WILD-TYPE" 
     TCGA-05-4402      TCGA-05-4405      TCGA-05-4415      TCGA-05-4417 
"SAMD7 WILD-TYPE" "SAMD7 WILD-TYPE" "SAMD7 WILD-TYPE" "SAMD7 WILD-TYPE" 
     TCGA-05-4418      TCGA-05-4420      TCGA-05-4424      TCGA-05-4426 
"SAMD7 WILD-TYPE" "SAMD7 WILD-TYPE" "SAMD7 WILD-TYPE" "SAMD7 WILD-TYPE" 
     TCGA-05-4427      TCGA-05-4430      TCGA-05-4432      TCGA-05-4433 
"SAMD7 WILD-TYPE" "SAMD7 WILD-TYPE" "SAMD7 WILD-TYPE" "SAMD7 WILD-TYPE" 
     TCGA-05-4434      TCGA-05-5420      TCGA-05-5423      TCGA-05-5425 
"SAMD7 WILD-TYPE" "SAMD7 WILD-TYPE" "SAMD7 WILD-TYPE"   "SAMD7 MUTATED" 
     TCGA-05-5429      TCGA-05-5715      TCGA-35-3615      TCGA-35-4122 
"SAMD7 WILD-TYPE" "SAMD7 WILD-TYPE" "SAMD7 WILD-TYPE" "SAMD7 WILD-TYPE" 
     TCGA-35-4123      TCGA-35-5375      TCGA-38-4625      TCGA-38-4626 
"SAMD7 WILD-TYPE"   "SAMD7 MUTATED" "SAMD7 WILD-TYPE" "SAMD7 WILD-TYPE" 
     TCGA-38-4627      TCGA-38-4628      TCGA-38-4629      TCGA-38-4630 
"SAMD7 WILD-TYPE" "SAMD7 WILD-TYPE" "SAMD7 WILD-TYPE" "SAMD7 WILD-TYPE" 
     TCGA-38-4631      TCGA-38-4632      TCGA-38-6178      TCGA-44-2655 
"SAMD7 WILD-TYPE" "SAMD7 WILD-TYPE" "SAMD7 WILD-TYPE" "SAMD7 WILD-TYPE" 
     TCGA-44-2656      TCGA-44-2657      TCGA-44-2659      TCGA-44-2661 
"SAMD7 WILD-TYPE" "SAMD7 WILD-TYPE" "SAMD7 WILD-TYPE" "SAMD7 WILD-TYPE" 
     TCGA-44-2662      TCGA-44-2665      TCGA-44-2666      TCGA-44-2668 
"SAMD7 WILD-TYPE" "SAMD7 WILD-TYPE" "SAMD7 WILD-TYPE" "SAMD7 WILD-TYPE" 
     TCGA-44-3396      TCGA-44-3398      TCGA-44-3918      TCGA-44-3919 
"SAMD7 WILD-TYPE" "SAMD7 WILD-TYPE" "SAMD7 WILD-TYPE" "SAMD7 WILD-TYPE" 
     TCGA-44-4112      TCGA-44-5643      TCGA-44-5645      TCGA-44-6144 
"SAMD7 WILD-TYPE" "SAMD7 WILD-TYPE" "SAMD7 WILD-TYPE" "SAMD7 WILD-TYPE" 
     TCGA-44-6145      TCGA-44-6146      TCGA-44-6147      TCGA-44-6148 
"SAMD7 WILD-TYPE" "SAMD7 WILD-TYPE" "SAMD7 WILD-TYPE" "SAMD7 WILD-TYPE" 
     TCGA-44-6774      TCGA-44-6775      TCGA-44-6776      TCGA-44-6777 
"SAMD7 WILD-TYPE" "SAMD7 WILD-TYPE" "SAMD7 WILD-TYPE" "SAMD7 WILD-TYPE" 
     TCGA-44-6778      TCGA-44-6779      TCGA-49-4486      TCGA-49-4487 
"SAMD7 WILD-TYPE" "SAMD7 WILD-TYPE" "SAMD7 WILD-TYPE" "SAMD7 WILD-TYPE" 
     TCGA-49-4488      TCGA-49-4490      TCGA-49-4494      TCGA-49-4501 
"SAMD7 WILD-TYPE" "SAMD7 WILD-TYPE" "SAMD7 WILD-TYPE" "SAMD7 WILD-TYPE" 
     TCGA-49-4505      TCGA-49-4506      TCGA-49-4507      TCGA-49-4510 
  "SAMD7 MUTATED" "SAMD7 WILD-TYPE" "SAMD7 WILD-TYPE" "SAMD7 WILD-TYPE" 
     TCGA-49-4512      TCGA-49-4514      TCGA-49-6742      TCGA-49-6743 
"SAMD7 WILD-TYPE" "SAMD7 WILD-TYPE" "SAMD7 WILD-TYPE"   "SAMD7 MUTATED" 
     TCGA-49-6744      TCGA-49-6745      TCGA-50-5044      TCGA-50-5045 
"SAMD7 WILD-TYPE" "SAMD7 WILD-TYPE" "SAMD7 WILD-TYPE" "SAMD7 WILD-TYPE" 
     TCGA-50-5049      TCGA-50-5051      TCGA-50-5055      TCGA-50-5066 
"SAMD7 WILD-TYPE" "SAMD7 WILD-TYPE" "SAMD7 WILD-TYPE" "SAMD7 WILD-TYPE" 
     TCGA-50-5068      TCGA-50-5072      TCGA-50-5930      TCGA-50-5931 
"SAMD7 WILD-TYPE" "SAMD7 WILD-TYPE" "SAMD7 WILD-TYPE" "SAMD7 WILD-TYPE" 
     TCGA-50-5932      TCGA-50-5933      TCGA-50-5935      TCGA-50-5936 
"SAMD7 WILD-TYPE" "SAMD7 WILD-TYPE" "SAMD7 WILD-TYPE" "SAMD7 WILD-TYPE" 
     TCGA-50-5939      TCGA-50-5941      TCGA-50-5942      TCGA-50-5944 
"SAMD7 WILD-TYPE" "SAMD7 WILD-TYPE" "SAMD7 WILD-TYPE" "SAMD7 WILD-TYPE" 
     TCGA-50-5946      TCGA-50-6590      TCGA-50-6591      TCGA-50-6592 
"SAMD7 WILD-TYPE" "SAMD7 WILD-TYPE" "SAMD7 WILD-TYPE" "SAMD7 WILD-TYPE" 
     TCGA-50-6593      TCGA-50-6594      TCGA-50-6595      TCGA-50-6597 
"SAMD7 WILD-TYPE" "SAMD7 WILD-TYPE" "SAMD7 WILD-TYPE" "SAMD7 WILD-TYPE" 
     TCGA-55-1592      TCGA-55-1594      TCGA-55-1595      TCGA-55-1596 
"SAMD7 WILD-TYPE" "SAMD7 WILD-TYPE" "SAMD7 WILD-TYPE" "SAMD7 WILD-TYPE" 
     TCGA-55-5899      TCGA-55-6543      TCGA-55-6642      TCGA-55-6712 
"SAMD7 WILD-TYPE" "SAMD7 WILD-TYPE" "SAMD7 WILD-TYPE" "SAMD7 WILD-TYPE" 
     TCGA-64-1676      TCGA-64-1677      TCGA-64-1678      TCGA-64-1680 
"SAMD7 WILD-TYPE" "SAMD7 WILD-TYPE" "SAMD7 WILD-TYPE" "SAMD7 WILD-TYPE" 
     TCGA-64-5774      TCGA-64-5775      TCGA-64-5778      TCGA-64-5779 
"SAMD7 WILD-TYPE" "SAMD7 WILD-TYPE" "SAMD7 WILD-TYPE" "SAMD7 WILD-TYPE" 
     TCGA-64-5781      TCGA-64-5815      TCGA-67-3770      TCGA-67-3771 
"SAMD7 WILD-TYPE" "SAMD7 WILD-TYPE" "SAMD7 WILD-TYPE" "SAMD7 WILD-TYPE" 
     TCGA-67-3772      TCGA-67-3773      TCGA-67-3774      TCGA-67-6215 
"SAMD7 WILD-TYPE" "SAMD7 WILD-TYPE" "SAMD7 WILD-TYPE" "SAMD7 WILD-TYPE" 
     TCGA-67-6216      TCGA-67-6217      TCGA-71-6725      TCGA-73-4658 
"SAMD7 WILD-TYPE" "SAMD7 WILD-TYPE" "SAMD7 WILD-TYPE" "SAMD7 WILD-TYPE" 
     TCGA-73-4659      TCGA-73-4662      TCGA-73-4666      TCGA-73-4668 
"SAMD7 WILD-TYPE" "SAMD7 WILD-TYPE" "SAMD7 WILD-TYPE" "SAMD7 WILD-TYPE" 
     TCGA-73-4670      TCGA-73-4675      TCGA-73-4676      TCGA-73-4677 
"SAMD7 WILD-TYPE" "SAMD7 WILD-TYPE" "SAMD7 WILD-TYPE" "SAMD7 WILD-TYPE" 
     TCGA-91-6828      TCGA-91-6829      TCGA-91-6831      TCGA-91-6835 
"SAMD7 WILD-TYPE" "SAMD7 WILD-TYPE" "SAMD7 WILD-TYPE" "SAMD7 WILD-TYPE" 
     TCGA-91-6836 
"SAMD7 WILD-TYPE" 
[1] "hr=" "1.1"
D103V2, continuous
D103V3, binary
[1] "tbl2"
                 cls
clus              [,1] [,2]
  SAMD7 MUTATED      4    2
  SAMD7 WILD-TYPE   89   77
        clus
vv       SAMD7 MUTATED SAMD7 WILD-TYPE
  FEMALE             4              89
  MALE               2              77
D103V4, continuous
[1] "Remove cluster labels:" "SAMD7 MUTATED"         
clus
  SAMD7 MUTATED SAMD7 WILD-TYPE 
              1              11 
     TCGA-35-4122      TCGA-35-4123      TCGA-64-1677      TCGA-64-5778 
"SAMD7 WILD-TYPE" "SAMD7 WILD-TYPE" "SAMD7 WILD-TYPE" "SAMD7 WILD-TYPE" 
     TCGA-71-6725      TCGA-73-4659      TCGA-73-4662      TCGA-73-4666 
"SAMD7 WILD-TYPE" "SAMD7 WILD-TYPE" "SAMD7 WILD-TYPE" "SAMD7 WILD-TYPE" 
     TCGA-73-4668      TCGA-73-4676      TCGA-75-5122 
"SAMD7 WILD-TYPE" "SAMD7 WILD-TYPE" "SAMD7 WILD-TYPE" 
D103V5, multiclass
D103V6, multiclass
    clus
vv   SAMD7 MUTATED SAMD7 WILD-TYPE
  T1             1              40
  T2             5             103
  T3             0              14
  T4             0               8
D103V7, multiclass
       clus
vv      SAMD7 MUTATED SAMD7 WILD-TYPE
  N0                2              93
  N1                2              35
  N2+N3             2              33
D103V8, multiclass
    clus
vv   SAMD7 MUTATED SAMD7 WILD-TYPE
  M0             5             132
  M1             0               9
  MX             1              21
D103V9, multiclass
     clus
vv    SAMD7 MUTATED SAMD7 WILD-TYPE
  I               2              86
  II              2              31
  III             2              37
  IV              0               9
D103V10, binary
[1] "tbl2"
                 cls
clus              [,1] [,2]
  SAMD7 MUTATED      0    6
  SAMD7 WILD-TYPE   16  150
     clus
vv    SAMD7 MUTATED SAMD7 WILD-TYPE
  NO              0              16
  YES             6             150
D103V11, continuous
D103V12, continuous
D103V13, multiclass
                                             clus
vv                                            SAMD7 MUTATED SAMD7 WILD-TYPE
  CURRENT REFORMED SMOKER FOR < OR = 15 YEARS             4              58
  CURRENT REFORMED SMOKER FOR > 15 YEARS                  1              45
  CURRENT SMOKER                                          1              27
  LIFELONG NON-SMOKER                                     0              24
D103V14, continuous

Clustering(104) Variable = BIRC8 MUTATION ANALYSIS
D104V1, survival
                 sevent
clus2              0  1
  BIRC8 MUTATED    2  3
  BIRC8 WILD-TYPE 97 47
  BIRC8 MUTATED BIRC8 WILD-TYPE 
              5             144 
  BIRC8 MUTATED BIRC8 WILD-TYPE 
              3              47 
$`BIRC8 MUTATED`
TCGA-05-4250 TCGA-44-6774 TCGA-49-4486 TCGA-73-4668 TCGA-91-6829 
        3.98         5.42        76.21        15.35        41.33 

$`BIRC8 WILD-TYPE`
TCGA-05-4249 TCGA-05-4382 TCGA-05-4384 TCGA-05-4390 TCGA-05-4396 TCGA-05-4397 
       38.07        19.92        14.01        37.02         9.96        24.03 
TCGA-05-4398 TCGA-05-4402 TCGA-05-4405 TCGA-05-4415 TCGA-05-4417 TCGA-05-4418 
       47.05         8.02        20.05         2.96        14.93         8.98 
TCGA-05-4420 TCGA-05-4424 TCGA-05-4426 TCGA-05-4427 TCGA-05-4430 TCGA-05-4432 
       29.95        30.02        26.01        26.01        25.02        25.02 
TCGA-05-4433 TCGA-05-4434 TCGA-05-5420 TCGA-05-5423 TCGA-05-5425 TCGA-05-5429 
       24.00        15.02         1.02         4.96         2.96         0.99 
TCGA-05-5715 TCGA-35-3615 TCGA-35-4122 TCGA-35-4123 TCGA-35-5375 TCGA-38-4625 
        2.04         0.46         7.36         5.95         8.68        47.61 
TCGA-38-4626 TCGA-38-4627 TCGA-38-4628 TCGA-38-4629 TCGA-38-4630 TCGA-38-4631 
       85.32        37.71        49.02        28.37        35.28        11.64 
TCGA-38-4632 TCGA-38-6178 TCGA-44-2655 TCGA-44-2656 TCGA-44-2657 TCGA-44-2659 
       44.61         5.19        18.87        19.10        13.15        17.39 
TCGA-44-2661 TCGA-44-2662 TCGA-44-2665 TCGA-44-2666 TCGA-44-2668 TCGA-44-3396 
        3.39        15.78        13.15         3.19         8.09        10.22 
TCGA-44-3398 TCGA-44-3918 TCGA-44-3919 TCGA-44-4112 TCGA-44-5643 TCGA-44-5645 
        8.32         6.44         6.21         4.60         3.48         6.84 
TCGA-44-6144 TCGA-44-6145 TCGA-44-6146 TCGA-44-6147 TCGA-44-6148 TCGA-44-6775 
        0.30         3.35         9.93         7.76         3.12         2.70 
TCGA-44-6776 TCGA-44-6777 TCGA-44-6778 TCGA-44-6779 TCGA-49-4487 TCGA-49-4488 
       63.72        32.45        36.49        16.41        28.11        28.57 
TCGA-49-4490 TCGA-49-4494 TCGA-49-4501 TCGA-49-4505 TCGA-49-4506 TCGA-49-4507 
       12.66        35.54        46.72        14.07        32.84         8.81 
TCGA-49-4510 TCGA-49-4512 TCGA-49-4514 TCGA-49-6742 TCGA-49-6743 TCGA-49-6744 
       29.46        29.75        43.20        15.02        12.13        12.99 
TCGA-49-6745 TCGA-50-5044 TCGA-50-5045 TCGA-50-5049 TCGA-50-5051 TCGA-50-5055 
        4.93        20.48        71.47        48.82        14.96        25.81 
TCGA-50-5066 TCGA-50-5068 TCGA-50-5072 TCGA-50-5930 TCGA-50-5931 TCGA-50-5932 
        9.76        49.28         8.05         9.27         8.78        35.87 
TCGA-50-5933 TCGA-50-5935 TCGA-50-5936 TCGA-50-5939 TCGA-50-5941 TCGA-50-5942 
       77.88        21.47         8.45        15.12         9.37         4.44 
TCGA-50-5944 TCGA-50-5946 TCGA-50-6590 TCGA-50-6591 TCGA-50-6592 TCGA-50-6593 
       12.26        11.47        42.31         3.88        25.51        11.05 
TCGA-50-6594 TCGA-50-6595 TCGA-50-6597 TCGA-55-1592 TCGA-55-1594 TCGA-55-1595 
       12.16         6.21        33.37        23.05        38.73        48.62 
TCGA-55-1596 TCGA-55-5899 TCGA-55-6543 TCGA-55-6642 TCGA-55-6712 TCGA-64-1676 
       45.17         2.86         0.07        32.61         0.79        56.81 
TCGA-64-1677 TCGA-64-1678 TCGA-64-1680 TCGA-64-5774 TCGA-64-5775 TCGA-64-5778 
       20.65        39.09        37.02        83.84         0.10        30.44 
TCGA-64-5779 TCGA-64-5781 TCGA-64-5815 TCGA-67-3770 TCGA-67-3771 TCGA-67-3772 
       16.67        39.52         7.33         0.99         1.97         0.59 
TCGA-67-3773 TCGA-67-3774 TCGA-67-6215 TCGA-67-6216 TCGA-67-6217 TCGA-71-6725 
        2.04         0.59         0.89         0.69        13.87         2.01 
TCGA-73-4658 TCGA-73-4659 TCGA-73-4662 TCGA-73-4666 TCGA-73-4670 TCGA-73-4675 
       52.57        23.38        29.95        20.28         0.46         1.32 
TCGA-73-4676 TCGA-73-4677 TCGA-91-6828 TCGA-91-6831 TCGA-91-6835 TCGA-91-6836 
        4.01         1.25         1.22         1.28         1.15         0.36 

  BIRC8 MUTATED BIRC8 WILD-TYPE 
           3.98            0.07 
  BIRC8 MUTATED BIRC8 WILD-TYPE 
          76.21           85.32 
  BIRC8 MUTATED BIRC8 WILD-TYPE 
          15.35           13.51 
[1] "4.0 - 76.2 (15.3)" "0.1 - 85.3 (13.5)"
     TCGA-05-4249      TCGA-05-4250      TCGA-05-4382      TCGA-05-4384 
"BIRC8 WILD-TYPE"   "BIRC8 MUTATED" "BIRC8 WILD-TYPE" "BIRC8 WILD-TYPE" 
     TCGA-05-4390      TCGA-05-4396      TCGA-05-4397      TCGA-05-4398 
"BIRC8 WILD-TYPE" "BIRC8 WILD-TYPE" "BIRC8 WILD-TYPE" "BIRC8 WILD-TYPE" 
     TCGA-05-4402      TCGA-05-4405      TCGA-05-4415      TCGA-05-4417 
"BIRC8 WILD-TYPE" "BIRC8 WILD-TYPE" "BIRC8 WILD-TYPE" "BIRC8 WILD-TYPE" 
     TCGA-05-4418      TCGA-05-4420      TCGA-05-4424      TCGA-05-4426 
"BIRC8 WILD-TYPE" "BIRC8 WILD-TYPE" "BIRC8 WILD-TYPE" "BIRC8 WILD-TYPE" 
     TCGA-05-4427      TCGA-05-4430      TCGA-05-4432      TCGA-05-4433 
"BIRC8 WILD-TYPE" "BIRC8 WILD-TYPE" "BIRC8 WILD-TYPE" "BIRC8 WILD-TYPE" 
     TCGA-05-4434      TCGA-05-5420      TCGA-05-5423      TCGA-05-5425 
"BIRC8 WILD-TYPE" "BIRC8 WILD-TYPE" "BIRC8 WILD-TYPE" "BIRC8 WILD-TYPE" 
     TCGA-05-5429      TCGA-05-5715      TCGA-35-3615      TCGA-35-4122 
"BIRC8 WILD-TYPE" "BIRC8 WILD-TYPE" "BIRC8 WILD-TYPE" "BIRC8 WILD-TYPE" 
     TCGA-35-4123      TCGA-35-5375      TCGA-38-4625      TCGA-38-4626 
"BIRC8 WILD-TYPE" "BIRC8 WILD-TYPE" "BIRC8 WILD-TYPE" "BIRC8 WILD-TYPE" 
     TCGA-38-4627      TCGA-38-4628      TCGA-38-4629      TCGA-38-4630 
"BIRC8 WILD-TYPE" "BIRC8 WILD-TYPE" "BIRC8 WILD-TYPE" "BIRC8 WILD-TYPE" 
     TCGA-38-4631      TCGA-38-4632      TCGA-38-6178      TCGA-44-2655 
"BIRC8 WILD-TYPE" "BIRC8 WILD-TYPE" "BIRC8 WILD-TYPE" "BIRC8 WILD-TYPE" 
     TCGA-44-2656      TCGA-44-2657      TCGA-44-2659      TCGA-44-2661 
"BIRC8 WILD-TYPE" "BIRC8 WILD-TYPE" "BIRC8 WILD-TYPE" "BIRC8 WILD-TYPE" 
     TCGA-44-2662      TCGA-44-2665      TCGA-44-2666      TCGA-44-2668 
"BIRC8 WILD-TYPE" "BIRC8 WILD-TYPE" "BIRC8 WILD-TYPE" "BIRC8 WILD-TYPE" 
     TCGA-44-3396      TCGA-44-3398      TCGA-44-3918      TCGA-44-3919 
"BIRC8 WILD-TYPE" "BIRC8 WILD-TYPE" "BIRC8 WILD-TYPE" "BIRC8 WILD-TYPE" 
     TCGA-44-4112      TCGA-44-5643      TCGA-44-5645      TCGA-44-6144 
"BIRC8 WILD-TYPE" "BIRC8 WILD-TYPE" "BIRC8 WILD-TYPE" "BIRC8 WILD-TYPE" 
     TCGA-44-6145      TCGA-44-6146      TCGA-44-6147      TCGA-44-6148 
"BIRC8 WILD-TYPE" "BIRC8 WILD-TYPE" "BIRC8 WILD-TYPE" "BIRC8 WILD-TYPE" 
     TCGA-44-6774      TCGA-44-6775      TCGA-44-6776      TCGA-44-6777 
  "BIRC8 MUTATED" "BIRC8 WILD-TYPE" "BIRC8 WILD-TYPE" "BIRC8 WILD-TYPE" 
     TCGA-44-6778      TCGA-44-6779      TCGA-49-4486      TCGA-49-4487 
"BIRC8 WILD-TYPE" "BIRC8 WILD-TYPE"   "BIRC8 MUTATED" "BIRC8 WILD-TYPE" 
     TCGA-49-4488      TCGA-49-4490      TCGA-49-4494      TCGA-49-4501 
"BIRC8 WILD-TYPE" "BIRC8 WILD-TYPE" "BIRC8 WILD-TYPE" "BIRC8 WILD-TYPE" 
     TCGA-49-4505      TCGA-49-4506      TCGA-49-4507      TCGA-49-4510 
"BIRC8 WILD-TYPE" "BIRC8 WILD-TYPE" "BIRC8 WILD-TYPE" "BIRC8 WILD-TYPE" 
     TCGA-49-4512      TCGA-49-4514      TCGA-49-6742      TCGA-49-6743 
"BIRC8 WILD-TYPE" "BIRC8 WILD-TYPE" "BIRC8 WILD-TYPE" "BIRC8 WILD-TYPE" 
     TCGA-49-6744      TCGA-49-6745      TCGA-50-5044      TCGA-50-5045 
"BIRC8 WILD-TYPE" "BIRC8 WILD-TYPE" "BIRC8 WILD-TYPE" "BIRC8 WILD-TYPE" 
     TCGA-50-5049      TCGA-50-5051      TCGA-50-5055      TCGA-50-5066 
"BIRC8 WILD-TYPE" "BIRC8 WILD-TYPE" "BIRC8 WILD-TYPE" "BIRC8 WILD-TYPE" 
     TCGA-50-5068      TCGA-50-5072      TCGA-50-5930      TCGA-50-5931 
"BIRC8 WILD-TYPE" "BIRC8 WILD-TYPE" "BIRC8 WILD-TYPE" "BIRC8 WILD-TYPE" 
     TCGA-50-5932      TCGA-50-5933      TCGA-50-5935      TCGA-50-5936 
"BIRC8 WILD-TYPE" "BIRC8 WILD-TYPE" "BIRC8 WILD-TYPE" "BIRC8 WILD-TYPE" 
     TCGA-50-5939      TCGA-50-5941      TCGA-50-5942      TCGA-50-5944 
"BIRC8 WILD-TYPE" "BIRC8 WILD-TYPE" "BIRC8 WILD-TYPE" "BIRC8 WILD-TYPE" 
     TCGA-50-5946      TCGA-50-6590      TCGA-50-6591      TCGA-50-6592 
"BIRC8 WILD-TYPE" "BIRC8 WILD-TYPE" "BIRC8 WILD-TYPE" "BIRC8 WILD-TYPE" 
     TCGA-50-6593      TCGA-50-6594      TCGA-50-6595      TCGA-50-6597 
"BIRC8 WILD-TYPE" "BIRC8 WILD-TYPE" "BIRC8 WILD-TYPE" "BIRC8 WILD-TYPE" 
     TCGA-55-1592      TCGA-55-1594      TCGA-55-1595      TCGA-55-1596 
"BIRC8 WILD-TYPE" "BIRC8 WILD-TYPE" "BIRC8 WILD-TYPE" "BIRC8 WILD-TYPE" 
     TCGA-55-5899      TCGA-55-6543      TCGA-55-6642      TCGA-55-6712 
"BIRC8 WILD-TYPE" "BIRC8 WILD-TYPE" "BIRC8 WILD-TYPE" "BIRC8 WILD-TYPE" 
     TCGA-64-1676      TCGA-64-1677      TCGA-64-1678      TCGA-64-1680 
"BIRC8 WILD-TYPE" "BIRC8 WILD-TYPE" "BIRC8 WILD-TYPE" "BIRC8 WILD-TYPE" 
     TCGA-64-5774      TCGA-64-5775      TCGA-64-5778      TCGA-64-5779 
"BIRC8 WILD-TYPE" "BIRC8 WILD-TYPE" "BIRC8 WILD-TYPE" "BIRC8 WILD-TYPE" 
     TCGA-64-5781      TCGA-64-5815      TCGA-67-3770      TCGA-67-3771 
"BIRC8 WILD-TYPE" "BIRC8 WILD-TYPE" "BIRC8 WILD-TYPE" "BIRC8 WILD-TYPE" 
     TCGA-67-3772      TCGA-67-3773      TCGA-67-3774      TCGA-67-6215 
"BIRC8 WILD-TYPE" "BIRC8 WILD-TYPE" "BIRC8 WILD-TYPE" "BIRC8 WILD-TYPE" 
     TCGA-67-6216      TCGA-67-6217      TCGA-71-6725      TCGA-73-4658 
"BIRC8 WILD-TYPE" "BIRC8 WILD-TYPE" "BIRC8 WILD-TYPE" "BIRC8 WILD-TYPE" 
     TCGA-73-4659      TCGA-73-4662      TCGA-73-4666      TCGA-73-4668 
"BIRC8 WILD-TYPE" "BIRC8 WILD-TYPE" "BIRC8 WILD-TYPE"   "BIRC8 MUTATED" 
     TCGA-73-4670      TCGA-73-4675      TCGA-73-4676      TCGA-73-4677 
"BIRC8 WILD-TYPE" "BIRC8 WILD-TYPE" "BIRC8 WILD-TYPE" "BIRC8 WILD-TYPE" 
     TCGA-91-6828      TCGA-91-6829      TCGA-91-6831      TCGA-91-6835 
"BIRC8 WILD-TYPE"   "BIRC8 MUTATED" "BIRC8 WILD-TYPE" "BIRC8 WILD-TYPE" 
     TCGA-91-6836 
"BIRC8 WILD-TYPE" 
     TCGA-05-4249      TCGA-05-4250      TCGA-05-4382      TCGA-05-4384 
"BIRC8 WILD-TYPE"   "BIRC8 MUTATED" "BIRC8 WILD-TYPE" "BIRC8 WILD-TYPE" 
     TCGA-05-4390      TCGA-05-4396      TCGA-05-4397      TCGA-05-4398 
"BIRC8 WILD-TYPE" "BIRC8 WILD-TYPE" "BIRC8 WILD-TYPE" "BIRC8 WILD-TYPE" 
     TCGA-05-4402      TCGA-05-4405      TCGA-05-4415      TCGA-05-4417 
"BIRC8 WILD-TYPE" "BIRC8 WILD-TYPE" "BIRC8 WILD-TYPE" "BIRC8 WILD-TYPE" 
     TCGA-05-4418      TCGA-05-4420      TCGA-05-4424      TCGA-05-4426 
"BIRC8 WILD-TYPE" "BIRC8 WILD-TYPE" "BIRC8 WILD-TYPE" "BIRC8 WILD-TYPE" 
     TCGA-05-4427      TCGA-05-4430      TCGA-05-4432      TCGA-05-4433 
"BIRC8 WILD-TYPE" "BIRC8 WILD-TYPE" "BIRC8 WILD-TYPE" "BIRC8 WILD-TYPE" 
     TCGA-05-4434      TCGA-05-5420      TCGA-05-5423      TCGA-05-5425 
"BIRC8 WILD-TYPE" "BIRC8 WILD-TYPE" "BIRC8 WILD-TYPE" "BIRC8 WILD-TYPE" 
     TCGA-05-5429      TCGA-05-5715      TCGA-35-3615      TCGA-35-4122 
"BIRC8 WILD-TYPE" "BIRC8 WILD-TYPE" "BIRC8 WILD-TYPE" "BIRC8 WILD-TYPE" 
     TCGA-35-4123      TCGA-35-5375      TCGA-38-4625      TCGA-38-4626 
"BIRC8 WILD-TYPE" "BIRC8 WILD-TYPE" "BIRC8 WILD-TYPE" "BIRC8 WILD-TYPE" 
     TCGA-38-4627      TCGA-38-4628      TCGA-38-4629      TCGA-38-4630 
"BIRC8 WILD-TYPE" "BIRC8 WILD-TYPE" "BIRC8 WILD-TYPE" "BIRC8 WILD-TYPE" 
     TCGA-38-4631      TCGA-38-4632      TCGA-38-6178      TCGA-44-2655 
"BIRC8 WILD-TYPE" "BIRC8 WILD-TYPE" "BIRC8 WILD-TYPE" "BIRC8 WILD-TYPE" 
     TCGA-44-2656      TCGA-44-2657      TCGA-44-2659      TCGA-44-2661 
"BIRC8 WILD-TYPE" "BIRC8 WILD-TYPE" "BIRC8 WILD-TYPE" "BIRC8 WILD-TYPE" 
     TCGA-44-2662      TCGA-44-2665      TCGA-44-2666      TCGA-44-2668 
"BIRC8 WILD-TYPE" "BIRC8 WILD-TYPE" "BIRC8 WILD-TYPE" "BIRC8 WILD-TYPE" 
     TCGA-44-3396      TCGA-44-3398      TCGA-44-3918      TCGA-44-3919 
"BIRC8 WILD-TYPE" "BIRC8 WILD-TYPE" "BIRC8 WILD-TYPE" "BIRC8 WILD-TYPE" 
     TCGA-44-4112      TCGA-44-5643      TCGA-44-5645      TCGA-44-6144 
"BIRC8 WILD-TYPE" "BIRC8 WILD-TYPE" "BIRC8 WILD-TYPE" "BIRC8 WILD-TYPE" 
     TCGA-44-6145      TCGA-44-6146      TCGA-44-6147      TCGA-44-6148 
"BIRC8 WILD-TYPE" "BIRC8 WILD-TYPE" "BIRC8 WILD-TYPE" "BIRC8 WILD-TYPE" 
     TCGA-44-6774      TCGA-44-6775      TCGA-44-6776      TCGA-44-6777 
  "BIRC8 MUTATED" "BIRC8 WILD-TYPE" "BIRC8 WILD-TYPE" "BIRC8 WILD-TYPE" 
     TCGA-44-6778      TCGA-44-6779      TCGA-49-4486      TCGA-49-4487 
"BIRC8 WILD-TYPE" "BIRC8 WILD-TYPE"   "BIRC8 MUTATED" "BIRC8 WILD-TYPE" 
     TCGA-49-4488      TCGA-49-4490      TCGA-49-4494      TCGA-49-4501 
"BIRC8 WILD-TYPE" "BIRC8 WILD-TYPE" "BIRC8 WILD-TYPE" "BIRC8 WILD-TYPE" 
     TCGA-49-4505      TCGA-49-4506      TCGA-49-4507      TCGA-49-4510 
"BIRC8 WILD-TYPE" "BIRC8 WILD-TYPE" "BIRC8 WILD-TYPE" "BIRC8 WILD-TYPE" 
     TCGA-49-4512      TCGA-49-4514      TCGA-49-6742      TCGA-49-6743 
"BIRC8 WILD-TYPE" "BIRC8 WILD-TYPE" "BIRC8 WILD-TYPE" "BIRC8 WILD-TYPE" 
     TCGA-49-6744      TCGA-49-6745      TCGA-50-5044      TCGA-50-5045 
"BIRC8 WILD-TYPE" "BIRC8 WILD-TYPE" "BIRC8 WILD-TYPE" "BIRC8 WILD-TYPE" 
     TCGA-50-5049      TCGA-50-5051      TCGA-50-5055      TCGA-50-5066 
"BIRC8 WILD-TYPE" "BIRC8 WILD-TYPE" "BIRC8 WILD-TYPE" "BIRC8 WILD-TYPE" 
     TCGA-50-5068      TCGA-50-5072      TCGA-50-5930      TCGA-50-5931 
"BIRC8 WILD-TYPE" "BIRC8 WILD-TYPE" "BIRC8 WILD-TYPE" "BIRC8 WILD-TYPE" 
     TCGA-50-5932      TCGA-50-5933      TCGA-50-5935      TCGA-50-5936 
"BIRC8 WILD-TYPE" "BIRC8 WILD-TYPE" "BIRC8 WILD-TYPE" "BIRC8 WILD-TYPE" 
     TCGA-50-5939      TCGA-50-5941      TCGA-50-5942      TCGA-50-5944 
"BIRC8 WILD-TYPE" "BIRC8 WILD-TYPE" "BIRC8 WILD-TYPE" "BIRC8 WILD-TYPE" 
     TCGA-50-5946      TCGA-50-6590      TCGA-50-6591      TCGA-50-6592 
"BIRC8 WILD-TYPE" "BIRC8 WILD-TYPE" "BIRC8 WILD-TYPE" "BIRC8 WILD-TYPE" 
     TCGA-50-6593      TCGA-50-6594      TCGA-50-6595      TCGA-50-6597 
"BIRC8 WILD-TYPE" "BIRC8 WILD-TYPE" "BIRC8 WILD-TYPE" "BIRC8 WILD-TYPE" 
     TCGA-55-1592      TCGA-55-1594      TCGA-55-1595      TCGA-55-1596 
"BIRC8 WILD-TYPE" "BIRC8 WILD-TYPE" "BIRC8 WILD-TYPE" "BIRC8 WILD-TYPE" 
     TCGA-55-5899      TCGA-55-6543      TCGA-55-6642      TCGA-55-6712 
"BIRC8 WILD-TYPE" "BIRC8 WILD-TYPE" "BIRC8 WILD-TYPE" "BIRC8 WILD-TYPE" 
     TCGA-64-1676      TCGA-64-1677      TCGA-64-1678      TCGA-64-1680 
"BIRC8 WILD-TYPE" "BIRC8 WILD-TYPE" "BIRC8 WILD-TYPE" "BIRC8 WILD-TYPE" 
     TCGA-64-5774      TCGA-64-5775      TCGA-64-5778      TCGA-64-5779 
"BIRC8 WILD-TYPE" "BIRC8 WILD-TYPE" "BIRC8 WILD-TYPE" "BIRC8 WILD-TYPE" 
     TCGA-64-5781      TCGA-64-5815      TCGA-67-3770      TCGA-67-3771 
"BIRC8 WILD-TYPE" "BIRC8 WILD-TYPE" "BIRC8 WILD-TYPE" "BIRC8 WILD-TYPE" 
     TCGA-67-3772      TCGA-67-3773      TCGA-67-3774      TCGA-67-6215 
"BIRC8 WILD-TYPE" "BIRC8 WILD-TYPE" "BIRC8 WILD-TYPE" "BIRC8 WILD-TYPE" 
     TCGA-67-6216      TCGA-67-6217      TCGA-71-6725      TCGA-73-4658 
"BIRC8 WILD-TYPE" "BIRC8 WILD-TYPE" "BIRC8 WILD-TYPE" "BIRC8 WILD-TYPE" 
     TCGA-73-4659      TCGA-73-4662      TCGA-73-4666      TCGA-73-4668 
"BIRC8 WILD-TYPE" "BIRC8 WILD-TYPE" "BIRC8 WILD-TYPE"   "BIRC8 MUTATED" 
     TCGA-73-4670      TCGA-73-4675      TCGA-73-4676      TCGA-73-4677 
"BIRC8 WILD-TYPE" "BIRC8 WILD-TYPE" "BIRC8 WILD-TYPE" "BIRC8 WILD-TYPE" 
     TCGA-91-6828      TCGA-91-6829      TCGA-91-6831      TCGA-91-6835 
"BIRC8 WILD-TYPE"   "BIRC8 MUTATED" "BIRC8 WILD-TYPE" "BIRC8 WILD-TYPE" 
     TCGA-91-6836 
"BIRC8 WILD-TYPE" 
     TCGA-05-4249      TCGA-05-4250      TCGA-05-4382      TCGA-05-4384 
"BIRC8 WILD-TYPE"   "BIRC8 MUTATED" "BIRC8 WILD-TYPE" "BIRC8 WILD-TYPE" 
     TCGA-05-4390      TCGA-05-4396      TCGA-05-4397      TCGA-05-4398 
"BIRC8 WILD-TYPE" "BIRC8 WILD-TYPE" "BIRC8 WILD-TYPE" "BIRC8 WILD-TYPE" 
     TCGA-05-4402      TCGA-05-4405      TCGA-05-4415      TCGA-05-4417 
"BIRC8 WILD-TYPE" "BIRC8 WILD-TYPE" "BIRC8 WILD-TYPE" "BIRC8 WILD-TYPE" 
     TCGA-05-4418      TCGA-05-4420      TCGA-05-4424      TCGA-05-4426 
"BIRC8 WILD-TYPE" "BIRC8 WILD-TYPE" "BIRC8 WILD-TYPE" "BIRC8 WILD-TYPE" 
     TCGA-05-4427      TCGA-05-4430      TCGA-05-4432      TCGA-05-4433 
"BIRC8 WILD-TYPE" "BIRC8 WILD-TYPE" "BIRC8 WILD-TYPE" "BIRC8 WILD-TYPE" 
     TCGA-05-4434      TCGA-05-5420      TCGA-05-5423      TCGA-05-5425 
"BIRC8 WILD-TYPE" "BIRC8 WILD-TYPE" "BIRC8 WILD-TYPE" "BIRC8 WILD-TYPE" 
     TCGA-05-5429      TCGA-05-5715      TCGA-35-3615      TCGA-35-4122 
"BIRC8 WILD-TYPE" "BIRC8 WILD-TYPE" "BIRC8 WILD-TYPE" "BIRC8 WILD-TYPE" 
     TCGA-35-4123      TCGA-35-5375      TCGA-38-4625      TCGA-38-4626 
"BIRC8 WILD-TYPE" "BIRC8 WILD-TYPE" "BIRC8 WILD-TYPE" "BIRC8 WILD-TYPE" 
     TCGA-38-4627      TCGA-38-4628      TCGA-38-4629      TCGA-38-4630 
"BIRC8 WILD-TYPE" "BIRC8 WILD-TYPE" "BIRC8 WILD-TYPE" "BIRC8 WILD-TYPE" 
     TCGA-38-4631      TCGA-38-4632      TCGA-38-6178      TCGA-44-2655 
"BIRC8 WILD-TYPE" "BIRC8 WILD-TYPE" "BIRC8 WILD-TYPE" "BIRC8 WILD-TYPE" 
     TCGA-44-2656      TCGA-44-2657      TCGA-44-2659      TCGA-44-2661 
"BIRC8 WILD-TYPE" "BIRC8 WILD-TYPE" "BIRC8 WILD-TYPE" "BIRC8 WILD-TYPE" 
     TCGA-44-2662      TCGA-44-2665      TCGA-44-2666      TCGA-44-2668 
"BIRC8 WILD-TYPE" "BIRC8 WILD-TYPE" "BIRC8 WILD-TYPE" "BIRC8 WILD-TYPE" 
     TCGA-44-3396      TCGA-44-3398      TCGA-44-3918      TCGA-44-3919 
"BIRC8 WILD-TYPE" "BIRC8 WILD-TYPE" "BIRC8 WILD-TYPE" "BIRC8 WILD-TYPE" 
     TCGA-44-4112      TCGA-44-5643      TCGA-44-5645      TCGA-44-6144 
"BIRC8 WILD-TYPE" "BIRC8 WILD-TYPE" "BIRC8 WILD-TYPE" "BIRC8 WILD-TYPE" 
     TCGA-44-6145      TCGA-44-6146      TCGA-44-6147      TCGA-44-6148 
"BIRC8 WILD-TYPE" "BIRC8 WILD-TYPE" "BIRC8 WILD-TYPE" "BIRC8 WILD-TYPE" 
     TCGA-44-6774      TCGA-44-6775      TCGA-44-6776      TCGA-44-6777 
  "BIRC8 MUTATED" "BIRC8 WILD-TYPE" "BIRC8 WILD-TYPE" "BIRC8 WILD-TYPE" 
     TCGA-44-6778      TCGA-44-6779      TCGA-49-4486      TCGA-49-4487 
"BIRC8 WILD-TYPE" "BIRC8 WILD-TYPE"   "BIRC8 MUTATED" "BIRC8 WILD-TYPE" 
     TCGA-49-4488      TCGA-49-4490      TCGA-49-4494      TCGA-49-4501 
"BIRC8 WILD-TYPE" "BIRC8 WILD-TYPE" "BIRC8 WILD-TYPE" "BIRC8 WILD-TYPE" 
     TCGA-49-4505      TCGA-49-4506      TCGA-49-4507      TCGA-49-4510 
"BIRC8 WILD-TYPE" "BIRC8 WILD-TYPE" "BIRC8 WILD-TYPE" "BIRC8 WILD-TYPE" 
     TCGA-49-4512      TCGA-49-4514      TCGA-49-6742      TCGA-49-6743 
"BIRC8 WILD-TYPE" "BIRC8 WILD-TYPE" "BIRC8 WILD-TYPE" "BIRC8 WILD-TYPE" 
     TCGA-49-6744      TCGA-49-6745      TCGA-50-5044      TCGA-50-5045 
"BIRC8 WILD-TYPE" "BIRC8 WILD-TYPE" "BIRC8 WILD-TYPE" "BIRC8 WILD-TYPE" 
     TCGA-50-5049      TCGA-50-5051      TCGA-50-5055      TCGA-50-5066 
"BIRC8 WILD-TYPE" "BIRC8 WILD-TYPE" "BIRC8 WILD-TYPE" "BIRC8 WILD-TYPE" 
     TCGA-50-5068      TCGA-50-5072      TCGA-50-5930      TCGA-50-5931 
"BIRC8 WILD-TYPE" "BIRC8 WILD-TYPE" "BIRC8 WILD-TYPE" "BIRC8 WILD-TYPE" 
     TCGA-50-5932      TCGA-50-5933      TCGA-50-5935      TCGA-50-5936 
"BIRC8 WILD-TYPE" "BIRC8 WILD-TYPE" "BIRC8 WILD-TYPE" "BIRC8 WILD-TYPE" 
     TCGA-50-5939      TCGA-50-5941      TCGA-50-5942      TCGA-50-5944 
"BIRC8 WILD-TYPE" "BIRC8 WILD-TYPE" "BIRC8 WILD-TYPE" "BIRC8 WILD-TYPE" 
     TCGA-50-5946      TCGA-50-6590      TCGA-50-6591      TCGA-50-6592 
"BIRC8 WILD-TYPE" "BIRC8 WILD-TYPE" "BIRC8 WILD-TYPE" "BIRC8 WILD-TYPE" 
     TCGA-50-6593      TCGA-50-6594      TCGA-50-6595      TCGA-50-6597 
"BIRC8 WILD-TYPE" "BIRC8 WILD-TYPE" "BIRC8 WILD-TYPE" "BIRC8 WILD-TYPE" 
     TCGA-55-1592      TCGA-55-1594      TCGA-55-1595      TCGA-55-1596 
"BIRC8 WILD-TYPE" "BIRC8 WILD-TYPE" "BIRC8 WILD-TYPE" "BIRC8 WILD-TYPE" 
     TCGA-55-5899      TCGA-55-6543      TCGA-55-6642      TCGA-55-6712 
"BIRC8 WILD-TYPE" "BIRC8 WILD-TYPE" "BIRC8 WILD-TYPE" "BIRC8 WILD-TYPE" 
     TCGA-64-1676      TCGA-64-1677      TCGA-64-1678      TCGA-64-1680 
"BIRC8 WILD-TYPE" "BIRC8 WILD-TYPE" "BIRC8 WILD-TYPE" "BIRC8 WILD-TYPE" 
     TCGA-64-5774      TCGA-64-5775      TCGA-64-5778      TCGA-64-5779 
"BIRC8 WILD-TYPE" "BIRC8 WILD-TYPE" "BIRC8 WILD-TYPE" "BIRC8 WILD-TYPE" 
     TCGA-64-5781      TCGA-64-5815      TCGA-67-3770      TCGA-67-3771 
"BIRC8 WILD-TYPE" "BIRC8 WILD-TYPE" "BIRC8 WILD-TYPE" "BIRC8 WILD-TYPE" 
     TCGA-67-3772      TCGA-67-3773      TCGA-67-3774      TCGA-67-6215 
"BIRC8 WILD-TYPE" "BIRC8 WILD-TYPE" "BIRC8 WILD-TYPE" "BIRC8 WILD-TYPE" 
     TCGA-67-6216      TCGA-67-6217      TCGA-71-6725      TCGA-73-4658 
"BIRC8 WILD-TYPE" "BIRC8 WILD-TYPE" "BIRC8 WILD-TYPE" "BIRC8 WILD-TYPE" 
     TCGA-73-4659      TCGA-73-4662      TCGA-73-4666      TCGA-73-4668 
"BIRC8 WILD-TYPE" "BIRC8 WILD-TYPE" "BIRC8 WILD-TYPE"   "BIRC8 MUTATED" 
     TCGA-73-4670      TCGA-73-4675      TCGA-73-4676      TCGA-73-4677 
"BIRC8 WILD-TYPE" "BIRC8 WILD-TYPE" "BIRC8 WILD-TYPE" "BIRC8 WILD-TYPE" 
     TCGA-91-6828      TCGA-91-6829      TCGA-91-6831      TCGA-91-6835 
"BIRC8 WILD-TYPE"   "BIRC8 MUTATED" "BIRC8 WILD-TYPE" "BIRC8 WILD-TYPE" 
     TCGA-91-6836 
"BIRC8 WILD-TYPE" 
[1] "hr=" "1.1"
D104V2, continuous
D104V3, binary
[1] "tbl2"
                 cls
clus              [,1] [,2]
  BIRC8 MUTATED      3    3
  BIRC8 WILD-TYPE   90   76
        clus
vv       BIRC8 MUTATED BIRC8 WILD-TYPE
  FEMALE             3              90
  MALE               3              76
D104V4, continuous
[1] "Remove cluster labels:" "BIRC8 MUTATED"         
clus
  BIRC8 MUTATED BIRC8 WILD-TYPE 
              1              11 
     TCGA-35-4122      TCGA-35-4123      TCGA-35-5375      TCGA-64-1677 
"BIRC8 WILD-TYPE" "BIRC8 WILD-TYPE" "BIRC8 WILD-TYPE" "BIRC8 WILD-TYPE" 
     TCGA-64-5778      TCGA-71-6725      TCGA-73-4659      TCGA-73-4662 
"BIRC8 WILD-TYPE" "BIRC8 WILD-TYPE" "BIRC8 WILD-TYPE" "BIRC8 WILD-TYPE" 
     TCGA-73-4666      TCGA-73-4676      TCGA-75-5122 
"BIRC8 WILD-TYPE" "BIRC8 WILD-TYPE" "BIRC8 WILD-TYPE" 
D104V5, multiclass
D104V6, multiclass
    clus
vv   BIRC8 MUTATED BIRC8 WILD-TYPE
  T1             2              39
  T2             3             105
  T3             1              13
  T4             0               8
D104V7, multiclass
       clus
vv      BIRC8 MUTATED BIRC8 WILD-TYPE
  N0                3              92
  N1                2              35
  N2+N3             1              34
D104V8, multiclass
    clus
vv   BIRC8 MUTATED BIRC8 WILD-TYPE
  M0             5             132
  M1             0               9
  MX             1              21
D104V9, multiclass
     clus
vv    BIRC8 MUTATED BIRC8 WILD-TYPE
  I               3              85
  II              1              32
  III             2              37
  IV              0               9
D104V10, binary
[1] "tbl2"
                 cls
clus              [,1] [,2]
  BIRC8 MUTATED      0    6
  BIRC8 WILD-TYPE   16  150
     clus
vv    BIRC8 MUTATED BIRC8 WILD-TYPE
  NO              0              16
  YES             6             150
D104V11, continuous
D104V12, continuous
D104V13, multiclass
                                             clus
vv                                            BIRC8 MUTATED BIRC8 WILD-TYPE
  CURRENT REFORMED SMOKER FOR < OR = 15 YEARS             3              59
  CURRENT REFORMED SMOKER FOR > 15 YEARS                  2              44
  CURRENT SMOKER                                          1              27
  LIFELONG NON-SMOKER                                     0              24
D104V14, continuous

Clustering(105) Variable = TBX5 MUTATION ANALYSIS
D105V1, survival
                sevent
clus2             0  1
  TBX5 MUTATED    6  4
  TBX5 WILD-TYPE 93 46
  TBX5 MUTATED TBX5 WILD-TYPE 
            10            139 
  TBX5 MUTATED TBX5 WILD-TYPE 
             4             46 
$`TBX5 MUTATED`
TCGA-05-4250 TCGA-05-4396 TCGA-35-4122 TCGA-44-2655 TCGA-44-2656 TCGA-50-5933 
        3.98         9.96         7.36        18.87        19.10        77.88 
TCGA-55-5899 TCGA-67-6217 TCGA-73-4659 TCGA-91-6828 
        2.86        13.87        23.38         1.22 

$`TBX5 WILD-TYPE`
TCGA-05-4249 TCGA-05-4382 TCGA-05-4384 TCGA-05-4390 TCGA-05-4397 TCGA-05-4398 
       38.07        19.92        14.01        37.02        24.03        47.05 
TCGA-05-4402 TCGA-05-4405 TCGA-05-4415 TCGA-05-4417 TCGA-05-4418 TCGA-05-4420 
        8.02        20.05         2.96        14.93         8.98        29.95 
TCGA-05-4424 TCGA-05-4426 TCGA-05-4427 TCGA-05-4430 TCGA-05-4432 TCGA-05-4433 
       30.02        26.01        26.01        25.02        25.02        24.00 
TCGA-05-4434 TCGA-05-5420 TCGA-05-5423 TCGA-05-5425 TCGA-05-5429 TCGA-05-5715 
       15.02         1.02         4.96         2.96         0.99         2.04 
TCGA-35-3615 TCGA-35-4123 TCGA-35-5375 TCGA-38-4625 TCGA-38-4626 TCGA-38-4627 
        0.46         5.95         8.68        47.61        85.32        37.71 
TCGA-38-4628 TCGA-38-4629 TCGA-38-4630 TCGA-38-4631 TCGA-38-4632 TCGA-38-6178 
       49.02        28.37        35.28        11.64        44.61         5.19 
TCGA-44-2657 TCGA-44-2659 TCGA-44-2661 TCGA-44-2662 TCGA-44-2665 TCGA-44-2666 
       13.15        17.39         3.39        15.78        13.15         3.19 
TCGA-44-2668 TCGA-44-3396 TCGA-44-3398 TCGA-44-3918 TCGA-44-3919 TCGA-44-4112 
        8.09        10.22         8.32         6.44         6.21         4.60 
TCGA-44-5643 TCGA-44-5645 TCGA-44-6144 TCGA-44-6145 TCGA-44-6146 TCGA-44-6147 
        3.48         6.84         0.30         3.35         9.93         7.76 
TCGA-44-6148 TCGA-44-6774 TCGA-44-6775 TCGA-44-6776 TCGA-44-6777 TCGA-44-6778 
        3.12         5.42         2.70        63.72        32.45        36.49 
TCGA-44-6779 TCGA-49-4486 TCGA-49-4487 TCGA-49-4488 TCGA-49-4490 TCGA-49-4494 
       16.41        76.21        28.11        28.57        12.66        35.54 
TCGA-49-4501 TCGA-49-4505 TCGA-49-4506 TCGA-49-4507 TCGA-49-4510 TCGA-49-4512 
       46.72        14.07        32.84         8.81        29.46        29.75 
TCGA-49-4514 TCGA-49-6742 TCGA-49-6743 TCGA-49-6744 TCGA-49-6745 TCGA-50-5044 
       43.20        15.02        12.13        12.99         4.93        20.48 
TCGA-50-5045 TCGA-50-5049 TCGA-50-5051 TCGA-50-5055 TCGA-50-5066 TCGA-50-5068 
       71.47        48.82        14.96        25.81         9.76        49.28 
TCGA-50-5072 TCGA-50-5930 TCGA-50-5931 TCGA-50-5932 TCGA-50-5935 TCGA-50-5936 
        8.05         9.27         8.78        35.87        21.47         8.45 
TCGA-50-5939 TCGA-50-5941 TCGA-50-5942 TCGA-50-5944 TCGA-50-5946 TCGA-50-6590 
       15.12         9.37         4.44        12.26        11.47        42.31 
TCGA-50-6591 TCGA-50-6592 TCGA-50-6593 TCGA-50-6594 TCGA-50-6595 TCGA-50-6597 
        3.88        25.51        11.05        12.16         6.21        33.37 
TCGA-55-1592 TCGA-55-1594 TCGA-55-1595 TCGA-55-1596 TCGA-55-6543 TCGA-55-6642 
       23.05        38.73        48.62        45.17         0.07        32.61 
TCGA-55-6712 TCGA-64-1676 TCGA-64-1677 TCGA-64-1678 TCGA-64-1680 TCGA-64-5774 
        0.79        56.81        20.65        39.09        37.02        83.84 
TCGA-64-5775 TCGA-64-5778 TCGA-64-5779 TCGA-64-5781 TCGA-64-5815 TCGA-67-3770 
        0.10        30.44        16.67        39.52         7.33         0.99 
TCGA-67-3771 TCGA-67-3772 TCGA-67-3773 TCGA-67-3774 TCGA-67-6215 TCGA-67-6216 
        1.97         0.59         2.04         0.59         0.89         0.69 
TCGA-71-6725 TCGA-73-4658 TCGA-73-4662 TCGA-73-4666 TCGA-73-4668 TCGA-73-4670 
        2.01        52.57        29.95        20.28        15.35         0.46 
TCGA-73-4675 TCGA-73-4676 TCGA-73-4677 TCGA-91-6829 TCGA-91-6831 TCGA-91-6835 
        1.32         4.01         1.25        41.33         1.28         1.15 
TCGA-91-6836 
        0.36 

  TBX5 MUTATED TBX5 WILD-TYPE 
          1.22           0.07 
  TBX5 MUTATED TBX5 WILD-TYPE 
         77.88          85.32 
  TBX5 MUTATED TBX5 WILD-TYPE 
        11.915         14.010 
[1] "1.2 - 77.9 (11.9)" "0.1 - 85.3 (14.0)"
    TCGA-05-4249     TCGA-05-4250     TCGA-05-4382     TCGA-05-4384 
"TBX5 WILD-TYPE"   "TBX5 MUTATED" "TBX5 WILD-TYPE" "TBX5 WILD-TYPE" 
    TCGA-05-4390     TCGA-05-4396     TCGA-05-4397     TCGA-05-4398 
"TBX5 WILD-TYPE"   "TBX5 MUTATED" "TBX5 WILD-TYPE" "TBX5 WILD-TYPE" 
    TCGA-05-4402     TCGA-05-4405     TCGA-05-4415     TCGA-05-4417 
"TBX5 WILD-TYPE" "TBX5 WILD-TYPE" "TBX5 WILD-TYPE" "TBX5 WILD-TYPE" 
    TCGA-05-4418     TCGA-05-4420     TCGA-05-4424     TCGA-05-4426 
"TBX5 WILD-TYPE" "TBX5 WILD-TYPE" "TBX5 WILD-TYPE" "TBX5 WILD-TYPE" 
    TCGA-05-4427     TCGA-05-4430     TCGA-05-4432     TCGA-05-4433 
"TBX5 WILD-TYPE" "TBX5 WILD-TYPE" "TBX5 WILD-TYPE" "TBX5 WILD-TYPE" 
    TCGA-05-4434     TCGA-05-5420     TCGA-05-5423     TCGA-05-5425 
"TBX5 WILD-TYPE" "TBX5 WILD-TYPE" "TBX5 WILD-TYPE" "TBX5 WILD-TYPE" 
    TCGA-05-5429     TCGA-05-5715     TCGA-35-3615     TCGA-35-4122 
"TBX5 WILD-TYPE" "TBX5 WILD-TYPE" "TBX5 WILD-TYPE"   "TBX5 MUTATED" 
    TCGA-35-4123     TCGA-35-5375     TCGA-38-4625     TCGA-38-4626 
"TBX5 WILD-TYPE" "TBX5 WILD-TYPE" "TBX5 WILD-TYPE" "TBX5 WILD-TYPE" 
    TCGA-38-4627     TCGA-38-4628     TCGA-38-4629     TCGA-38-4630 
"TBX5 WILD-TYPE" "TBX5 WILD-TYPE" "TBX5 WILD-TYPE" "TBX5 WILD-TYPE" 
    TCGA-38-4631     TCGA-38-4632     TCGA-38-6178     TCGA-44-2655 
"TBX5 WILD-TYPE" "TBX5 WILD-TYPE" "TBX5 WILD-TYPE"   "TBX5 MUTATED" 
    TCGA-44-2656     TCGA-44-2657     TCGA-44-2659     TCGA-44-2661 
  "TBX5 MUTATED" "TBX5 WILD-TYPE" "TBX5 WILD-TYPE" "TBX5 WILD-TYPE" 
    TCGA-44-2662     TCGA-44-2665     TCGA-44-2666     TCGA-44-2668 
"TBX5 WILD-TYPE" "TBX5 WILD-TYPE" "TBX5 WILD-TYPE" "TBX5 WILD-TYPE" 
    TCGA-44-3396     TCGA-44-3398     TCGA-44-3918     TCGA-44-3919 
"TBX5 WILD-TYPE" "TBX5 WILD-TYPE" "TBX5 WILD-TYPE" "TBX5 WILD-TYPE" 
    TCGA-44-4112     TCGA-44-5643     TCGA-44-5645     TCGA-44-6144 
"TBX5 WILD-TYPE" "TBX5 WILD-TYPE" "TBX5 WILD-TYPE" "TBX5 WILD-TYPE" 
    TCGA-44-6145     TCGA-44-6146     TCGA-44-6147     TCGA-44-6148 
"TBX5 WILD-TYPE" "TBX5 WILD-TYPE" "TBX5 WILD-TYPE" "TBX5 WILD-TYPE" 
    TCGA-44-6774     TCGA-44-6775     TCGA-44-6776     TCGA-44-6777 
"TBX5 WILD-TYPE" "TBX5 WILD-TYPE" "TBX5 WILD-TYPE" "TBX5 WILD-TYPE" 
    TCGA-44-6778     TCGA-44-6779     TCGA-49-4486     TCGA-49-4487 
"TBX5 WILD-TYPE" "TBX5 WILD-TYPE" "TBX5 WILD-TYPE" "TBX5 WILD-TYPE" 
    TCGA-49-4488     TCGA-49-4490     TCGA-49-4494     TCGA-49-4501 
"TBX5 WILD-TYPE" "TBX5 WILD-TYPE" "TBX5 WILD-TYPE" "TBX5 WILD-TYPE" 
    TCGA-49-4505     TCGA-49-4506     TCGA-49-4507     TCGA-49-4510 
"TBX5 WILD-TYPE" "TBX5 WILD-TYPE" "TBX5 WILD-TYPE" "TBX5 WILD-TYPE" 
    TCGA-49-4512     TCGA-49-4514     TCGA-49-6742     TCGA-49-6743 
"TBX5 WILD-TYPE" "TBX5 WILD-TYPE" "TBX5 WILD-TYPE" "TBX5 WILD-TYPE" 
    TCGA-49-6744     TCGA-49-6745     TCGA-50-5044     TCGA-50-5045 
"TBX5 WILD-TYPE" "TBX5 WILD-TYPE" "TBX5 WILD-TYPE" "TBX5 WILD-TYPE" 
    TCGA-50-5049     TCGA-50-5051     TCGA-50-5055     TCGA-50-5066 
"TBX5 WILD-TYPE" "TBX5 WILD-TYPE" "TBX5 WILD-TYPE" "TBX5 WILD-TYPE" 
    TCGA-50-5068     TCGA-50-5072     TCGA-50-5930     TCGA-50-5931 
"TBX5 WILD-TYPE" "TBX5 WILD-TYPE" "TBX5 WILD-TYPE" "TBX5 WILD-TYPE" 
    TCGA-50-5932     TCGA-50-5933     TCGA-50-5935     TCGA-50-5936 
"TBX5 WILD-TYPE"   "TBX5 MUTATED" "TBX5 WILD-TYPE" "TBX5 WILD-TYPE" 
    TCGA-50-5939     TCGA-50-5941     TCGA-50-5942     TCGA-50-5944 
"TBX5 WILD-TYPE" "TBX5 WILD-TYPE" "TBX5 WILD-TYPE" "TBX5 WILD-TYPE" 
    TCGA-50-5946     TCGA-50-6590     TCGA-50-6591     TCGA-50-6592 
"TBX5 WILD-TYPE" "TBX5 WILD-TYPE" "TBX5 WILD-TYPE" "TBX5 WILD-TYPE" 
    TCGA-50-6593     TCGA-50-6594     TCGA-50-6595     TCGA-50-6597 
"TBX5 WILD-TYPE" "TBX5 WILD-TYPE" "TBX5 WILD-TYPE" "TBX5 WILD-TYPE" 
    TCGA-55-1592     TCGA-55-1594     TCGA-55-1595     TCGA-55-1596 
"TBX5 WILD-TYPE" "TBX5 WILD-TYPE" "TBX5 WILD-TYPE" "TBX5 WILD-TYPE" 
    TCGA-55-5899     TCGA-55-6543     TCGA-55-6642     TCGA-55-6712 
  "TBX5 MUTATED" "TBX5 WILD-TYPE" "TBX5 WILD-TYPE" "TBX5 WILD-TYPE" 
    TCGA-64-1676     TCGA-64-1677     TCGA-64-1678     TCGA-64-1680 
"TBX5 WILD-TYPE" "TBX5 WILD-TYPE" "TBX5 WILD-TYPE" "TBX5 WILD-TYPE" 
    TCGA-64-5774     TCGA-64-5775     TCGA-64-5778     TCGA-64-5779 
"TBX5 WILD-TYPE" "TBX5 WILD-TYPE" "TBX5 WILD-TYPE" "TBX5 WILD-TYPE" 
    TCGA-64-5781     TCGA-64-5815     TCGA-67-3770     TCGA-67-3771 
"TBX5 WILD-TYPE" "TBX5 WILD-TYPE" "TBX5 WILD-TYPE" "TBX5 WILD-TYPE" 
    TCGA-67-3772     TCGA-67-3773     TCGA-67-3774     TCGA-67-6215 
"TBX5 WILD-TYPE" "TBX5 WILD-TYPE" "TBX5 WILD-TYPE" "TBX5 WILD-TYPE" 
    TCGA-67-6216     TCGA-67-6217     TCGA-71-6725     TCGA-73-4658 
"TBX5 WILD-TYPE"   "TBX5 MUTATED" "TBX5 WILD-TYPE" "TBX5 WILD-TYPE" 
    TCGA-73-4659     TCGA-73-4662     TCGA-73-4666     TCGA-73-4668 
  "TBX5 MUTATED" "TBX5 WILD-TYPE" "TBX5 WILD-TYPE" "TBX5 WILD-TYPE" 
    TCGA-73-4670     TCGA-73-4675     TCGA-73-4676     TCGA-73-4677 
"TBX5 WILD-TYPE" "TBX5 WILD-TYPE" "TBX5 WILD-TYPE" "TBX5 WILD-TYPE" 
    TCGA-91-6828     TCGA-91-6829     TCGA-91-6831     TCGA-91-6835 
  "TBX5 MUTATED" "TBX5 WILD-TYPE" "TBX5 WILD-TYPE" "TBX5 WILD-TYPE" 
    TCGA-91-6836 
"TBX5 WILD-TYPE" 
    TCGA-05-4249     TCGA-05-4250     TCGA-05-4382     TCGA-05-4384 
"TBX5 WILD-TYPE"   "TBX5 MUTATED" "TBX5 WILD-TYPE" "TBX5 WILD-TYPE" 
    TCGA-05-4390     TCGA-05-4396     TCGA-05-4397     TCGA-05-4398 
"TBX5 WILD-TYPE"   "TBX5 MUTATED" "TBX5 WILD-TYPE" "TBX5 WILD-TYPE" 
    TCGA-05-4402     TCGA-05-4405     TCGA-05-4415     TCGA-05-4417 
"TBX5 WILD-TYPE" "TBX5 WILD-TYPE" "TBX5 WILD-TYPE" "TBX5 WILD-TYPE" 
    TCGA-05-4418     TCGA-05-4420     TCGA-05-4424     TCGA-05-4426 
"TBX5 WILD-TYPE" "TBX5 WILD-TYPE" "TBX5 WILD-TYPE" "TBX5 WILD-TYPE" 
    TCGA-05-4427     TCGA-05-4430     TCGA-05-4432     TCGA-05-4433 
"TBX5 WILD-TYPE" "TBX5 WILD-TYPE" "TBX5 WILD-TYPE" "TBX5 WILD-TYPE" 
    TCGA-05-4434     TCGA-05-5420     TCGA-05-5423     TCGA-05-5425 
"TBX5 WILD-TYPE" "TBX5 WILD-TYPE" "TBX5 WILD-TYPE" "TBX5 WILD-TYPE" 
    TCGA-05-5429     TCGA-05-5715     TCGA-35-3615     TCGA-35-4122 
"TBX5 WILD-TYPE" "TBX5 WILD-TYPE" "TBX5 WILD-TYPE"   "TBX5 MUTATED" 
    TCGA-35-4123     TCGA-35-5375     TCGA-38-4625     TCGA-38-4626 
"TBX5 WILD-TYPE" "TBX5 WILD-TYPE" "TBX5 WILD-TYPE" "TBX5 WILD-TYPE" 
    TCGA-38-4627     TCGA-38-4628     TCGA-38-4629     TCGA-38-4630 
"TBX5 WILD-TYPE" "TBX5 WILD-TYPE" "TBX5 WILD-TYPE" "TBX5 WILD-TYPE" 
    TCGA-38-4631     TCGA-38-4632     TCGA-38-6178     TCGA-44-2655 
"TBX5 WILD-TYPE" "TBX5 WILD-TYPE" "TBX5 WILD-TYPE"   "TBX5 MUTATED" 
    TCGA-44-2656     TCGA-44-2657     TCGA-44-2659     TCGA-44-2661 
  "TBX5 MUTATED" "TBX5 WILD-TYPE" "TBX5 WILD-TYPE" "TBX5 WILD-TYPE" 
    TCGA-44-2662     TCGA-44-2665     TCGA-44-2666     TCGA-44-2668 
"TBX5 WILD-TYPE" "TBX5 WILD-TYPE" "TBX5 WILD-TYPE" "TBX5 WILD-TYPE" 
    TCGA-44-3396     TCGA-44-3398     TCGA-44-3918     TCGA-44-3919 
"TBX5 WILD-TYPE" "TBX5 WILD-TYPE" "TBX5 WILD-TYPE" "TBX5 WILD-TYPE" 
    TCGA-44-4112     TCGA-44-5643     TCGA-44-5645     TCGA-44-6144 
"TBX5 WILD-TYPE" "TBX5 WILD-TYPE" "TBX5 WILD-TYPE" "TBX5 WILD-TYPE" 
    TCGA-44-6145     TCGA-44-6146     TCGA-44-6147     TCGA-44-6148 
"TBX5 WILD-TYPE" "TBX5 WILD-TYPE" "TBX5 WILD-TYPE" "TBX5 WILD-TYPE" 
    TCGA-44-6774     TCGA-44-6775     TCGA-44-6776     TCGA-44-6777 
"TBX5 WILD-TYPE" "TBX5 WILD-TYPE" "TBX5 WILD-TYPE" "TBX5 WILD-TYPE" 
    TCGA-44-6778     TCGA-44-6779     TCGA-49-4486     TCGA-49-4487 
"TBX5 WILD-TYPE" "TBX5 WILD-TYPE" "TBX5 WILD-TYPE" "TBX5 WILD-TYPE" 
    TCGA-49-4488     TCGA-49-4490     TCGA-49-4494     TCGA-49-4501 
"TBX5 WILD-TYPE" "TBX5 WILD-TYPE" "TBX5 WILD-TYPE" "TBX5 WILD-TYPE" 
    TCGA-49-4505     TCGA-49-4506     TCGA-49-4507     TCGA-49-4510 
"TBX5 WILD-TYPE" "TBX5 WILD-TYPE" "TBX5 WILD-TYPE" "TBX5 WILD-TYPE" 
    TCGA-49-4512     TCGA-49-4514     TCGA-49-6742     TCGA-49-6743 
"TBX5 WILD-TYPE" "TBX5 WILD-TYPE" "TBX5 WILD-TYPE" "TBX5 WILD-TYPE" 
    TCGA-49-6744     TCGA-49-6745     TCGA-50-5044     TCGA-50-5045 
"TBX5 WILD-TYPE" "TBX5 WILD-TYPE" "TBX5 WILD-TYPE" "TBX5 WILD-TYPE" 
    TCGA-50-5049     TCGA-50-5051     TCGA-50-5055     TCGA-50-5066 
"TBX5 WILD-TYPE" "TBX5 WILD-TYPE" "TBX5 WILD-TYPE" "TBX5 WILD-TYPE" 
    TCGA-50-5068     TCGA-50-5072     TCGA-50-5930     TCGA-50-5931 
"TBX5 WILD-TYPE" "TBX5 WILD-TYPE" "TBX5 WILD-TYPE" "TBX5 WILD-TYPE" 
    TCGA-50-5932     TCGA-50-5933     TCGA-50-5935     TCGA-50-5936 
"TBX5 WILD-TYPE"   "TBX5 MUTATED" "TBX5 WILD-TYPE" "TBX5 WILD-TYPE" 
    TCGA-50-5939     TCGA-50-5941     TCGA-50-5942     TCGA-50-5944 
"TBX5 WILD-TYPE" "TBX5 WILD-TYPE" "TBX5 WILD-TYPE" "TBX5 WILD-TYPE" 
    TCGA-50-5946     TCGA-50-6590     TCGA-50-6591     TCGA-50-6592 
"TBX5 WILD-TYPE" "TBX5 WILD-TYPE" "TBX5 WILD-TYPE" "TBX5 WILD-TYPE" 
    TCGA-50-6593     TCGA-50-6594     TCGA-50-6595     TCGA-50-6597 
"TBX5 WILD-TYPE" "TBX5 WILD-TYPE" "TBX5 WILD-TYPE" "TBX5 WILD-TYPE" 
    TCGA-55-1592     TCGA-55-1594     TCGA-55-1595     TCGA-55-1596 
"TBX5 WILD-TYPE" "TBX5 WILD-TYPE" "TBX5 WILD-TYPE" "TBX5 WILD-TYPE" 
    TCGA-55-5899     TCGA-55-6543     TCGA-55-6642     TCGA-55-6712 
  "TBX5 MUTATED" "TBX5 WILD-TYPE" "TBX5 WILD-TYPE" "TBX5 WILD-TYPE" 
    TCGA-64-1676     TCGA-64-1677     TCGA-64-1678     TCGA-64-1680 
"TBX5 WILD-TYPE" "TBX5 WILD-TYPE" "TBX5 WILD-TYPE" "TBX5 WILD-TYPE" 
    TCGA-64-5774     TCGA-64-5775     TCGA-64-5778     TCGA-64-5779 
"TBX5 WILD-TYPE" "TBX5 WILD-TYPE" "TBX5 WILD-TYPE" "TBX5 WILD-TYPE" 
    TCGA-64-5781     TCGA-64-5815     TCGA-67-3770     TCGA-67-3771 
"TBX5 WILD-TYPE" "TBX5 WILD-TYPE" "TBX5 WILD-TYPE" "TBX5 WILD-TYPE" 
    TCGA-67-3772     TCGA-67-3773     TCGA-67-3774     TCGA-67-6215 
"TBX5 WILD-TYPE" "TBX5 WILD-TYPE" "TBX5 WILD-TYPE" "TBX5 WILD-TYPE" 
    TCGA-67-6216     TCGA-67-6217     TCGA-71-6725     TCGA-73-4658 
"TBX5 WILD-TYPE"   "TBX5 MUTATED" "TBX5 WILD-TYPE" "TBX5 WILD-TYPE" 
    TCGA-73-4659     TCGA-73-4662     TCGA-73-4666     TCGA-73-4668 
  "TBX5 MUTATED" "TBX5 WILD-TYPE" "TBX5 WILD-TYPE" "TBX5 WILD-TYPE" 
    TCGA-73-4670     TCGA-73-4675     TCGA-73-4676     TCGA-73-4677 
"TBX5 WILD-TYPE" "TBX5 WILD-TYPE" "TBX5 WILD-TYPE" "TBX5 WILD-TYPE" 
    TCGA-91-6828     TCGA-91-6829     TCGA-91-6831     TCGA-91-6835 
  "TBX5 MUTATED" "TBX5 WILD-TYPE" "TBX5 WILD-TYPE" "TBX5 WILD-TYPE" 
    TCGA-91-6836 
"TBX5 WILD-TYPE" 
    TCGA-05-4249     TCGA-05-4250     TCGA-05-4382     TCGA-05-4384 
"TBX5 WILD-TYPE"   "TBX5 MUTATED" "TBX5 WILD-TYPE" "TBX5 WILD-TYPE" 
    TCGA-05-4390     TCGA-05-4396     TCGA-05-4397     TCGA-05-4398 
"TBX5 WILD-TYPE"   "TBX5 MUTATED" "TBX5 WILD-TYPE" "TBX5 WILD-TYPE" 
    TCGA-05-4402     TCGA-05-4405     TCGA-05-4415     TCGA-05-4417 
"TBX5 WILD-TYPE" "TBX5 WILD-TYPE" "TBX5 WILD-TYPE" "TBX5 WILD-TYPE" 
    TCGA-05-4418     TCGA-05-4420     TCGA-05-4424     TCGA-05-4426 
"TBX5 WILD-TYPE" "TBX5 WILD-TYPE" "TBX5 WILD-TYPE" "TBX5 WILD-TYPE" 
    TCGA-05-4427     TCGA-05-4430     TCGA-05-4432     TCGA-05-4433 
"TBX5 WILD-TYPE" "TBX5 WILD-TYPE" "TBX5 WILD-TYPE" "TBX5 WILD-TYPE" 
    TCGA-05-4434     TCGA-05-5420     TCGA-05-5423     TCGA-05-5425 
"TBX5 WILD-TYPE" "TBX5 WILD-TYPE" "TBX5 WILD-TYPE" "TBX5 WILD-TYPE" 
    TCGA-05-5429     TCGA-05-5715     TCGA-35-3615     TCGA-35-4122 
"TBX5 WILD-TYPE" "TBX5 WILD-TYPE" "TBX5 WILD-TYPE"   "TBX5 MUTATED" 
    TCGA-35-4123     TCGA-35-5375     TCGA-38-4625     TCGA-38-4626 
"TBX5 WILD-TYPE" "TBX5 WILD-TYPE" "TBX5 WILD-TYPE" "TBX5 WILD-TYPE" 
    TCGA-38-4627     TCGA-38-4628     TCGA-38-4629     TCGA-38-4630 
"TBX5 WILD-TYPE" "TBX5 WILD-TYPE" "TBX5 WILD-TYPE" "TBX5 WILD-TYPE" 
    TCGA-38-4631     TCGA-38-4632     TCGA-38-6178     TCGA-44-2655 
"TBX5 WILD-TYPE" "TBX5 WILD-TYPE" "TBX5 WILD-TYPE"   "TBX5 MUTATED" 
    TCGA-44-2656     TCGA-44-2657     TCGA-44-2659     TCGA-44-2661 
  "TBX5 MUTATED" "TBX5 WILD-TYPE" "TBX5 WILD-TYPE" "TBX5 WILD-TYPE" 
    TCGA-44-2662     TCGA-44-2665     TCGA-44-2666     TCGA-44-2668 
"TBX5 WILD-TYPE" "TBX5 WILD-TYPE" "TBX5 WILD-TYPE" "TBX5 WILD-TYPE" 
    TCGA-44-3396     TCGA-44-3398     TCGA-44-3918     TCGA-44-3919 
"TBX5 WILD-TYPE" "TBX5 WILD-TYPE" "TBX5 WILD-TYPE" "TBX5 WILD-TYPE" 
    TCGA-44-4112     TCGA-44-5643     TCGA-44-5645     TCGA-44-6144 
"TBX5 WILD-TYPE" "TBX5 WILD-TYPE" "TBX5 WILD-TYPE" "TBX5 WILD-TYPE" 
    TCGA-44-6145     TCGA-44-6146     TCGA-44-6147     TCGA-44-6148 
"TBX5 WILD-TYPE" "TBX5 WILD-TYPE" "TBX5 WILD-TYPE" "TBX5 WILD-TYPE" 
    TCGA-44-6774     TCGA-44-6775     TCGA-44-6776     TCGA-44-6777 
"TBX5 WILD-TYPE" "TBX5 WILD-TYPE" "TBX5 WILD-TYPE" "TBX5 WILD-TYPE" 
    TCGA-44-6778     TCGA-44-6779     TCGA-49-4486     TCGA-49-4487 
"TBX5 WILD-TYPE" "TBX5 WILD-TYPE" "TBX5 WILD-TYPE" "TBX5 WILD-TYPE" 
    TCGA-49-4488     TCGA-49-4490     TCGA-49-4494     TCGA-49-4501 
"TBX5 WILD-TYPE" "TBX5 WILD-TYPE" "TBX5 WILD-TYPE" "TBX5 WILD-TYPE" 
    TCGA-49-4505     TCGA-49-4506     TCGA-49-4507     TCGA-49-4510 
"TBX5 WILD-TYPE" "TBX5 WILD-TYPE" "TBX5 WILD-TYPE" "TBX5 WILD-TYPE" 
    TCGA-49-4512     TCGA-49-4514     TCGA-49-6742     TCGA-49-6743 
"TBX5 WILD-TYPE" "TBX5 WILD-TYPE" "TBX5 WILD-TYPE" "TBX5 WILD-TYPE" 
    TCGA-49-6744     TCGA-49-6745     TCGA-50-5044     TCGA-50-5045 
"TBX5 WILD-TYPE" "TBX5 WILD-TYPE" "TBX5 WILD-TYPE" "TBX5 WILD-TYPE" 
    TCGA-50-5049     TCGA-50-5051     TCGA-50-5055     TCGA-50-5066 
"TBX5 WILD-TYPE" "TBX5 WILD-TYPE" "TBX5 WILD-TYPE" "TBX5 WILD-TYPE" 
    TCGA-50-5068     TCGA-50-5072     TCGA-50-5930     TCGA-50-5931 
"TBX5 WILD-TYPE" "TBX5 WILD-TYPE" "TBX5 WILD-TYPE" "TBX5 WILD-TYPE" 
    TCGA-50-5932     TCGA-50-5933     TCGA-50-5935     TCGA-50-5936 
"TBX5 WILD-TYPE"   "TBX5 MUTATED" "TBX5 WILD-TYPE" "TBX5 WILD-TYPE" 
    TCGA-50-5939     TCGA-50-5941     TCGA-50-5942     TCGA-50-5944 
"TBX5 WILD-TYPE" "TBX5 WILD-TYPE" "TBX5 WILD-TYPE" "TBX5 WILD-TYPE" 
    TCGA-50-5946     TCGA-50-6590     TCGA-50-6591     TCGA-50-6592 
"TBX5 WILD-TYPE" "TBX5 WILD-TYPE" "TBX5 WILD-TYPE" "TBX5 WILD-TYPE" 
    TCGA-50-6593     TCGA-50-6594     TCGA-50-6595     TCGA-50-6597 
"TBX5 WILD-TYPE" "TBX5 WILD-TYPE" "TBX5 WILD-TYPE" "TBX5 WILD-TYPE" 
    TCGA-55-1592     TCGA-55-1594     TCGA-55-1595     TCGA-55-1596 
"TBX5 WILD-TYPE" "TBX5 WILD-TYPE" "TBX5 WILD-TYPE" "TBX5 WILD-TYPE" 
    TCGA-55-5899     TCGA-55-6543     TCGA-55-6642     TCGA-55-6712 
  "TBX5 MUTATED" "TBX5 WILD-TYPE" "TBX5 WILD-TYPE" "TBX5 WILD-TYPE" 
    TCGA-64-1676     TCGA-64-1677     TCGA-64-1678     TCGA-64-1680 
"TBX5 WILD-TYPE" "TBX5 WILD-TYPE" "TBX5 WILD-TYPE" "TBX5 WILD-TYPE" 
    TCGA-64-5774     TCGA-64-5775     TCGA-64-5778     TCGA-64-5779 
"TBX5 WILD-TYPE" "TBX5 WILD-TYPE" "TBX5 WILD-TYPE" "TBX5 WILD-TYPE" 
    TCGA-64-5781     TCGA-64-5815     TCGA-67-3770     TCGA-67-3771 
"TBX5 WILD-TYPE" "TBX5 WILD-TYPE" "TBX5 WILD-TYPE" "TBX5 WILD-TYPE" 
    TCGA-67-3772     TCGA-67-3773     TCGA-67-3774     TCGA-67-6215 
"TBX5 WILD-TYPE" "TBX5 WILD-TYPE" "TBX5 WILD-TYPE" "TBX5 WILD-TYPE" 
    TCGA-67-6216     TCGA-67-6217     TCGA-71-6725     TCGA-73-4658 
"TBX5 WILD-TYPE"   "TBX5 MUTATED" "TBX5 WILD-TYPE" "TBX5 WILD-TYPE" 
    TCGA-73-4659     TCGA-73-4662     TCGA-73-4666     TCGA-73-4668 
  "TBX5 MUTATED" "TBX5 WILD-TYPE" "TBX5 WILD-TYPE" "TBX5 WILD-TYPE" 
    TCGA-73-4670     TCGA-73-4675     TCGA-73-4676     TCGA-73-4677 
"TBX5 WILD-TYPE" "TBX5 WILD-TYPE" "TBX5 WILD-TYPE" "TBX5 WILD-TYPE" 
    TCGA-91-6828     TCGA-91-6829     TCGA-91-6831     TCGA-91-6835 
  "TBX5 MUTATED" "TBX5 WILD-TYPE" "TBX5 WILD-TYPE" "TBX5 WILD-TYPE" 
    TCGA-91-6836 
"TBX5 WILD-TYPE" 
[1] "hr=" "1.3"
D105V2, continuous
D105V3, binary
[1] "tbl2"
                cls
clus             [,1] [,2]
  TBX5 MUTATED      3    8
  TBX5 WILD-TYPE   90   71
        clus
vv       TBX5 MUTATED TBX5 WILD-TYPE
  FEMALE            3             90
  MALE              8             71
D105V4, continuous
[1] "Remove cluster labels:" "TBX5 MUTATED"          
clus
  TBX5 MUTATED TBX5 WILD-TYPE 
             2             10 
    TCGA-35-4123     TCGA-35-5375     TCGA-64-1677     TCGA-64-5778 
"TBX5 WILD-TYPE" "TBX5 WILD-TYPE" "TBX5 WILD-TYPE" "TBX5 WILD-TYPE" 
    TCGA-71-6725     TCGA-73-4662     TCGA-73-4666     TCGA-73-4668 
"TBX5 WILD-TYPE" "TBX5 WILD-TYPE" "TBX5 WILD-TYPE" "TBX5 WILD-TYPE" 
    TCGA-73-4676     TCGA-75-5122 
"TBX5 WILD-TYPE" "TBX5 WILD-TYPE" 
D105V5, multiclass
D105V6, multiclass
    clus
vv   TBX5 MUTATED TBX5 WILD-TYPE
  T1            4             37
  T2            4            104
  T3            1             13
  T4            2              6
D105V7, multiclass
       clus
vv      TBX5 MUTATED TBX5 WILD-TYPE
  N0               5             90
  N1               4             33
  N2+N3            2             33
D105V8, multiclass
    clus
vv   TBX5 MUTATED TBX5 WILD-TYPE
  M0           10            127
  M1            0              9
  MX            1             21
D105V9, multiclass
     clus
vv    TBX5 MUTATED TBX5 WILD-TYPE
  I              6             82
  II             1             32
  III            4             35
  IV             0              9
D105V10, binary
[1] "tbl2"
                cls
clus             [,1] [,2]
  TBX5 MUTATED      1   10
  TBX5 WILD-TYPE   15  146
     clus
vv    TBX5 MUTATED TBX5 WILD-TYPE
  NO             1             15
  YES           10            146
D105V11, continuous
D105V12, continuous
D105V13, multiclass
                                             clus
vv                                            TBX5 MUTATED TBX5 WILD-TYPE
  CURRENT REFORMED SMOKER FOR < OR = 15 YEARS            3             59
  CURRENT REFORMED SMOKER FOR > 15 YEARS                 6             40
  CURRENT SMOKER                                         1             27
  LIFELONG NON-SMOKER                                    0             24
D105V14, continuous

Clustering(106) Variable = TYR MUTATION ANALYSIS
D106V1, survival
               sevent
clus2            0  1
  TYR MUTATED    5  3
  TYR WILD-TYPE 94 47
  TYR MUTATED TYR WILD-TYPE 
            8           141 
  TYR MUTATED TYR WILD-TYPE 
            3            47 
$`TYR MUTATED`
TCGA-05-4396 TCGA-05-4402 TCGA-44-2657 TCGA-44-3918 TCGA-44-6144 TCGA-49-4514 
        9.96         8.02        13.15         6.44         0.30        43.20 
TCGA-50-6590 TCGA-64-5779 
       42.31        16.67 

$`TYR WILD-TYPE`
TCGA-05-4249 TCGA-05-4250 TCGA-05-4382 TCGA-05-4384 TCGA-05-4390 TCGA-05-4397 
       38.07         3.98        19.92        14.01        37.02        24.03 
TCGA-05-4398 TCGA-05-4405 TCGA-05-4415 TCGA-05-4417 TCGA-05-4418 TCGA-05-4420 
       47.05        20.05         2.96        14.93         8.98        29.95 
TCGA-05-4424 TCGA-05-4426 TCGA-05-4427 TCGA-05-4430 TCGA-05-4432 TCGA-05-4433 
       30.02        26.01        26.01        25.02        25.02        24.00 
TCGA-05-4434 TCGA-05-5420 TCGA-05-5423 TCGA-05-5425 TCGA-05-5429 TCGA-05-5715 
       15.02         1.02         4.96         2.96         0.99         2.04 
TCGA-35-3615 TCGA-35-4122 TCGA-35-4123 TCGA-35-5375 TCGA-38-4625 TCGA-38-4626 
        0.46         7.36         5.95         8.68        47.61        85.32 
TCGA-38-4627 TCGA-38-4628 TCGA-38-4629 TCGA-38-4630 TCGA-38-4631 TCGA-38-4632 
       37.71        49.02        28.37        35.28        11.64        44.61 
TCGA-38-6178 TCGA-44-2655 TCGA-44-2656 TCGA-44-2659 TCGA-44-2661 TCGA-44-2662 
        5.19        18.87        19.10        17.39         3.39        15.78 
TCGA-44-2665 TCGA-44-2666 TCGA-44-2668 TCGA-44-3396 TCGA-44-3398 TCGA-44-3919 
       13.15         3.19         8.09        10.22         8.32         6.21 
TCGA-44-4112 TCGA-44-5643 TCGA-44-5645 TCGA-44-6145 TCGA-44-6146 TCGA-44-6147 
        4.60         3.48         6.84         3.35         9.93         7.76 
TCGA-44-6148 TCGA-44-6774 TCGA-44-6775 TCGA-44-6776 TCGA-44-6777 TCGA-44-6778 
        3.12         5.42         2.70        63.72        32.45        36.49 
TCGA-44-6779 TCGA-49-4486 TCGA-49-4487 TCGA-49-4488 TCGA-49-4490 TCGA-49-4494 
       16.41        76.21        28.11        28.57        12.66        35.54 
TCGA-49-4501 TCGA-49-4505 TCGA-49-4506 TCGA-49-4507 TCGA-49-4510 TCGA-49-4512 
       46.72        14.07        32.84         8.81        29.46        29.75 
TCGA-49-6742 TCGA-49-6743 TCGA-49-6744 TCGA-49-6745 TCGA-50-5044 TCGA-50-5045 
       15.02        12.13        12.99         4.93        20.48        71.47 
TCGA-50-5049 TCGA-50-5051 TCGA-50-5055 TCGA-50-5066 TCGA-50-5068 TCGA-50-5072 
       48.82        14.96        25.81         9.76        49.28         8.05 
TCGA-50-5930 TCGA-50-5931 TCGA-50-5932 TCGA-50-5933 TCGA-50-5935 TCGA-50-5936 
        9.27         8.78        35.87        77.88        21.47         8.45 
TCGA-50-5939 TCGA-50-5941 TCGA-50-5942 TCGA-50-5944 TCGA-50-5946 TCGA-50-6591 
       15.12         9.37         4.44        12.26        11.47         3.88 
TCGA-50-6592 TCGA-50-6593 TCGA-50-6594 TCGA-50-6595 TCGA-50-6597 TCGA-55-1592 
       25.51        11.05        12.16         6.21        33.37        23.05 
TCGA-55-1594 TCGA-55-1595 TCGA-55-1596 TCGA-55-5899 TCGA-55-6543 TCGA-55-6642 
       38.73        48.62        45.17         2.86         0.07        32.61 
TCGA-55-6712 TCGA-64-1676 TCGA-64-1677 TCGA-64-1678 TCGA-64-1680 TCGA-64-5774 
        0.79        56.81        20.65        39.09        37.02        83.84 
TCGA-64-5775 TCGA-64-5778 TCGA-64-5781 TCGA-64-5815 TCGA-67-3770 TCGA-67-3771 
        0.10        30.44        39.52         7.33         0.99         1.97 
TCGA-67-3772 TCGA-67-3773 TCGA-67-3774 TCGA-67-6215 TCGA-67-6216 TCGA-67-6217 
        0.59         2.04         0.59         0.89         0.69        13.87 
TCGA-71-6725 TCGA-73-4658 TCGA-73-4659 TCGA-73-4662 TCGA-73-4666 TCGA-73-4668 
        2.01        52.57        23.38        29.95        20.28        15.35 
TCGA-73-4670 TCGA-73-4675 TCGA-73-4676 TCGA-73-4677 TCGA-91-6828 TCGA-91-6829 
        0.46         1.32         4.01         1.25         1.22        41.33 
TCGA-91-6831 TCGA-91-6835 TCGA-91-6836 
        1.28         1.15         0.36 

  TYR MUTATED TYR WILD-TYPE 
         0.30          0.07 
  TYR MUTATED TYR WILD-TYPE 
        43.20         85.32 
  TYR MUTATED TYR WILD-TYPE 
       11.555        14.010 
[1] "0.3 - 43.2 (11.6)" "0.1 - 85.3 (14.0)"
   TCGA-05-4249    TCGA-05-4250    TCGA-05-4382    TCGA-05-4384    TCGA-05-4390 
"TYR WILD-TYPE" "TYR WILD-TYPE" "TYR WILD-TYPE" "TYR WILD-TYPE" "TYR WILD-TYPE" 
   TCGA-05-4396    TCGA-05-4397    TCGA-05-4398    TCGA-05-4402    TCGA-05-4405 
  "TYR MUTATED" "TYR WILD-TYPE" "TYR WILD-TYPE"   "TYR MUTATED" "TYR WILD-TYPE" 
   TCGA-05-4415    TCGA-05-4417    TCGA-05-4418    TCGA-05-4420    TCGA-05-4424 
"TYR WILD-TYPE" "TYR WILD-TYPE" "TYR WILD-TYPE" "TYR WILD-TYPE" "TYR WILD-TYPE" 
   TCGA-05-4426    TCGA-05-4427    TCGA-05-4430    TCGA-05-4432    TCGA-05-4433 
"TYR WILD-TYPE" "TYR WILD-TYPE" "TYR WILD-TYPE" "TYR WILD-TYPE" "TYR WILD-TYPE" 
   TCGA-05-4434    TCGA-05-5420    TCGA-05-5423    TCGA-05-5425    TCGA-05-5429 
"TYR WILD-TYPE" "TYR WILD-TYPE" "TYR WILD-TYPE" "TYR WILD-TYPE" "TYR WILD-TYPE" 
   TCGA-05-5715    TCGA-35-3615    TCGA-35-4122    TCGA-35-4123    TCGA-35-5375 
"TYR WILD-TYPE" "TYR WILD-TYPE" "TYR WILD-TYPE" "TYR WILD-TYPE" "TYR WILD-TYPE" 
   TCGA-38-4625    TCGA-38-4626    TCGA-38-4627    TCGA-38-4628    TCGA-38-4629 
"TYR WILD-TYPE" "TYR WILD-TYPE" "TYR WILD-TYPE" "TYR WILD-TYPE" "TYR WILD-TYPE" 
   TCGA-38-4630    TCGA-38-4631    TCGA-38-4632    TCGA-38-6178    TCGA-44-2655 
"TYR WILD-TYPE" "TYR WILD-TYPE" "TYR WILD-TYPE" "TYR WILD-TYPE" "TYR WILD-TYPE" 
   TCGA-44-2656    TCGA-44-2657    TCGA-44-2659    TCGA-44-2661    TCGA-44-2662 
"TYR WILD-TYPE"   "TYR MUTATED" "TYR WILD-TYPE" "TYR WILD-TYPE" "TYR WILD-TYPE" 
   TCGA-44-2665    TCGA-44-2666    TCGA-44-2668    TCGA-44-3396    TCGA-44-3398 
"TYR WILD-TYPE" "TYR WILD-TYPE" "TYR WILD-TYPE" "TYR WILD-TYPE" "TYR WILD-TYPE" 
   TCGA-44-3918    TCGA-44-3919    TCGA-44-4112    TCGA-44-5643    TCGA-44-5645 
  "TYR MUTATED" "TYR WILD-TYPE" "TYR WILD-TYPE" "TYR WILD-TYPE" "TYR WILD-TYPE" 
   TCGA-44-6144    TCGA-44-6145    TCGA-44-6146    TCGA-44-6147    TCGA-44-6148 
  "TYR MUTATED" "TYR WILD-TYPE" "TYR WILD-TYPE" "TYR WILD-TYPE" "TYR WILD-TYPE" 
   TCGA-44-6774    TCGA-44-6775    TCGA-44-6776    TCGA-44-6777    TCGA-44-6778 
"TYR WILD-TYPE" "TYR WILD-TYPE" "TYR WILD-TYPE" "TYR WILD-TYPE" "TYR WILD-TYPE" 
   TCGA-44-6779    TCGA-49-4486    TCGA-49-4487    TCGA-49-4488    TCGA-49-4490 
"TYR WILD-TYPE" "TYR WILD-TYPE" "TYR WILD-TYPE" "TYR WILD-TYPE" "TYR WILD-TYPE" 
   TCGA-49-4494    TCGA-49-4501    TCGA-49-4505    TCGA-49-4506    TCGA-49-4507 
"TYR WILD-TYPE" "TYR WILD-TYPE" "TYR WILD-TYPE" "TYR WILD-TYPE" "TYR WILD-TYPE" 
   TCGA-49-4510    TCGA-49-4512    TCGA-49-4514    TCGA-49-6742    TCGA-49-6743 
"TYR WILD-TYPE" "TYR WILD-TYPE"   "TYR MUTATED" "TYR WILD-TYPE" "TYR WILD-TYPE" 
   TCGA-49-6744    TCGA-49-6745    TCGA-50-5044    TCGA-50-5045    TCGA-50-5049 
"TYR WILD-TYPE" "TYR WILD-TYPE" "TYR WILD-TYPE" "TYR WILD-TYPE" "TYR WILD-TYPE" 
   TCGA-50-5051    TCGA-50-5055    TCGA-50-5066    TCGA-50-5068    TCGA-50-5072 
"TYR WILD-TYPE" "TYR WILD-TYPE" "TYR WILD-TYPE" "TYR WILD-TYPE" "TYR WILD-TYPE" 
   TCGA-50-5930    TCGA-50-5931    TCGA-50-5932    TCGA-50-5933    TCGA-50-5935 
"TYR WILD-TYPE" "TYR WILD-TYPE" "TYR WILD-TYPE" "TYR WILD-TYPE" "TYR WILD-TYPE" 
   TCGA-50-5936    TCGA-50-5939    TCGA-50-5941    TCGA-50-5942    TCGA-50-5944 
"TYR WILD-TYPE" "TYR WILD-TYPE" "TYR WILD-TYPE" "TYR WILD-TYPE" "TYR WILD-TYPE" 
   TCGA-50-5946    TCGA-50-6590    TCGA-50-6591    TCGA-50-6592    TCGA-50-6593 
"TYR WILD-TYPE"   "TYR MUTATED" "TYR WILD-TYPE" "TYR WILD-TYPE" "TYR WILD-TYPE" 
   TCGA-50-6594    TCGA-50-6595    TCGA-50-6597    TCGA-55-1592    TCGA-55-1594 
"TYR WILD-TYPE" "TYR WILD-TYPE" "TYR WILD-TYPE" "TYR WILD-TYPE" "TYR WILD-TYPE" 
   TCGA-55-1595    TCGA-55-1596    TCGA-55-5899    TCGA-55-6543    TCGA-55-6642 
"TYR WILD-TYPE" "TYR WILD-TYPE" "TYR WILD-TYPE" "TYR WILD-TYPE" "TYR WILD-TYPE" 
   TCGA-55-6712    TCGA-64-1676    TCGA-64-1677    TCGA-64-1678    TCGA-64-1680 
"TYR WILD-TYPE" "TYR WILD-TYPE" "TYR WILD-TYPE" "TYR WILD-TYPE" "TYR WILD-TYPE" 
   TCGA-64-5774    TCGA-64-5775    TCGA-64-5778    TCGA-64-5779    TCGA-64-5781 
"TYR WILD-TYPE" "TYR WILD-TYPE" "TYR WILD-TYPE"   "TYR MUTATED" "TYR WILD-TYPE" 
   TCGA-64-5815    TCGA-67-3770    TCGA-67-3771    TCGA-67-3772    TCGA-67-3773 
"TYR WILD-TYPE" "TYR WILD-TYPE" "TYR WILD-TYPE" "TYR WILD-TYPE" "TYR WILD-TYPE" 
   TCGA-67-3774    TCGA-67-6215    TCGA-67-6216    TCGA-67-6217    TCGA-71-6725 
"TYR WILD-TYPE" "TYR WILD-TYPE" "TYR WILD-TYPE" "TYR WILD-TYPE" "TYR WILD-TYPE" 
   TCGA-73-4658    TCGA-73-4659    TCGA-73-4662    TCGA-73-4666    TCGA-73-4668 
"TYR WILD-TYPE" "TYR WILD-TYPE" "TYR WILD-TYPE" "TYR WILD-TYPE" "TYR WILD-TYPE" 
   TCGA-73-4670    TCGA-73-4675    TCGA-73-4676    TCGA-73-4677    TCGA-91-6828 
"TYR WILD-TYPE" "TYR WILD-TYPE" "TYR WILD-TYPE" "TYR WILD-TYPE" "TYR WILD-TYPE" 
   TCGA-91-6829    TCGA-91-6831    TCGA-91-6835    TCGA-91-6836 
"TYR WILD-TYPE" "TYR WILD-TYPE" "TYR WILD-TYPE" "TYR WILD-TYPE" 
   TCGA-05-4249    TCGA-05-4250    TCGA-05-4382    TCGA-05-4384    TCGA-05-4390 
"TYR WILD-TYPE" "TYR WILD-TYPE" "TYR WILD-TYPE" "TYR WILD-TYPE" "TYR WILD-TYPE" 
   TCGA-05-4396    TCGA-05-4397    TCGA-05-4398    TCGA-05-4402    TCGA-05-4405 
  "TYR MUTATED" "TYR WILD-TYPE" "TYR WILD-TYPE"   "TYR MUTATED" "TYR WILD-TYPE" 
   TCGA-05-4415    TCGA-05-4417    TCGA-05-4418    TCGA-05-4420    TCGA-05-4424 
"TYR WILD-TYPE" "TYR WILD-TYPE" "TYR WILD-TYPE" "TYR WILD-TYPE" "TYR WILD-TYPE" 
   TCGA-05-4426    TCGA-05-4427    TCGA-05-4430    TCGA-05-4432    TCGA-05-4433 
"TYR WILD-TYPE" "TYR WILD-TYPE" "TYR WILD-TYPE" "TYR WILD-TYPE" "TYR WILD-TYPE" 
   TCGA-05-4434    TCGA-05-5420    TCGA-05-5423    TCGA-05-5425    TCGA-05-5429 
"TYR WILD-TYPE" "TYR WILD-TYPE" "TYR WILD-TYPE" "TYR WILD-TYPE" "TYR WILD-TYPE" 
   TCGA-05-5715    TCGA-35-3615    TCGA-35-4122    TCGA-35-4123    TCGA-35-5375 
"TYR WILD-TYPE" "TYR WILD-TYPE" "TYR WILD-TYPE" "TYR WILD-TYPE" "TYR WILD-TYPE" 
   TCGA-38-4625    TCGA-38-4626    TCGA-38-4627    TCGA-38-4628    TCGA-38-4629 
"TYR WILD-TYPE" "TYR WILD-TYPE" "TYR WILD-TYPE" "TYR WILD-TYPE" "TYR WILD-TYPE" 
   TCGA-38-4630    TCGA-38-4631    TCGA-38-4632    TCGA-38-6178    TCGA-44-2655 
"TYR WILD-TYPE" "TYR WILD-TYPE" "TYR WILD-TYPE" "TYR WILD-TYPE" "TYR WILD-TYPE" 
   TCGA-44-2656    TCGA-44-2657    TCGA-44-2659    TCGA-44-2661    TCGA-44-2662 
"TYR WILD-TYPE"   "TYR MUTATED" "TYR WILD-TYPE" "TYR WILD-TYPE" "TYR WILD-TYPE" 
   TCGA-44-2665    TCGA-44-2666    TCGA-44-2668    TCGA-44-3396    TCGA-44-3398 
"TYR WILD-TYPE" "TYR WILD-TYPE" "TYR WILD-TYPE" "TYR WILD-TYPE" "TYR WILD-TYPE" 
   TCGA-44-3918    TCGA-44-3919    TCGA-44-4112    TCGA-44-5643    TCGA-44-5645 
  "TYR MUTATED" "TYR WILD-TYPE" "TYR WILD-TYPE" "TYR WILD-TYPE" "TYR WILD-TYPE" 
   TCGA-44-6144    TCGA-44-6145    TCGA-44-6146    TCGA-44-6147    TCGA-44-6148 
  "TYR MUTATED" "TYR WILD-TYPE" "TYR WILD-TYPE" "TYR WILD-TYPE" "TYR WILD-TYPE" 
   TCGA-44-6774    TCGA-44-6775    TCGA-44-6776    TCGA-44-6777    TCGA-44-6778 
"TYR WILD-TYPE" "TYR WILD-TYPE" "TYR WILD-TYPE" "TYR WILD-TYPE" "TYR WILD-TYPE" 
   TCGA-44-6779    TCGA-49-4486    TCGA-49-4487    TCGA-49-4488    TCGA-49-4490 
"TYR WILD-TYPE" "TYR WILD-TYPE" "TYR WILD-TYPE" "TYR WILD-TYPE" "TYR WILD-TYPE" 
   TCGA-49-4494    TCGA-49-4501    TCGA-49-4505    TCGA-49-4506    TCGA-49-4507 
"TYR WILD-TYPE" "TYR WILD-TYPE" "TYR WILD-TYPE" "TYR WILD-TYPE" "TYR WILD-TYPE" 
   TCGA-49-4510    TCGA-49-4512    TCGA-49-4514    TCGA-49-6742    TCGA-49-6743 
"TYR WILD-TYPE" "TYR WILD-TYPE"   "TYR MUTATED" "TYR WILD-TYPE" "TYR WILD-TYPE" 
   TCGA-49-6744    TCGA-49-6745    TCGA-50-5044    TCGA-50-5045    TCGA-50-5049 
"TYR WILD-TYPE" "TYR WILD-TYPE" "TYR WILD-TYPE" "TYR WILD-TYPE" "TYR WILD-TYPE" 
   TCGA-50-5051    TCGA-50-5055    TCGA-50-5066    TCGA-50-5068    TCGA-50-5072 
"TYR WILD-TYPE" "TYR WILD-TYPE" "TYR WILD-TYPE" "TYR WILD-TYPE" "TYR WILD-TYPE" 
   TCGA-50-5930    TCGA-50-5931    TCGA-50-5932    TCGA-50-5933    TCGA-50-5935 
"TYR WILD-TYPE" "TYR WILD-TYPE" "TYR WILD-TYPE" "TYR WILD-TYPE" "TYR WILD-TYPE" 
   TCGA-50-5936    TCGA-50-5939    TCGA-50-5941    TCGA-50-5942    TCGA-50-5944 
"TYR WILD-TYPE" "TYR WILD-TYPE" "TYR WILD-TYPE" "TYR WILD-TYPE" "TYR WILD-TYPE" 
   TCGA-50-5946    TCGA-50-6590    TCGA-50-6591    TCGA-50-6592    TCGA-50-6593 
"TYR WILD-TYPE"   "TYR MUTATED" "TYR WILD-TYPE" "TYR WILD-TYPE" "TYR WILD-TYPE" 
   TCGA-50-6594    TCGA-50-6595    TCGA-50-6597    TCGA-55-1592    TCGA-55-1594 
"TYR WILD-TYPE" "TYR WILD-TYPE" "TYR WILD-TYPE" "TYR WILD-TYPE" "TYR WILD-TYPE" 
   TCGA-55-1595    TCGA-55-1596    TCGA-55-5899    TCGA-55-6543    TCGA-55-6642 
"TYR WILD-TYPE" "TYR WILD-TYPE" "TYR WILD-TYPE" "TYR WILD-TYPE" "TYR WILD-TYPE" 
   TCGA-55-6712    TCGA-64-1676    TCGA-64-1677    TCGA-64-1678    TCGA-64-1680 
"TYR WILD-TYPE" "TYR WILD-TYPE" "TYR WILD-TYPE" "TYR WILD-TYPE" "TYR WILD-TYPE" 
   TCGA-64-5774    TCGA-64-5775    TCGA-64-5778    TCGA-64-5779    TCGA-64-5781 
"TYR WILD-TYPE" "TYR WILD-TYPE" "TYR WILD-TYPE"   "TYR MUTATED" "TYR WILD-TYPE" 
   TCGA-64-5815    TCGA-67-3770    TCGA-67-3771    TCGA-67-3772    TCGA-67-3773 
"TYR WILD-TYPE" "TYR WILD-TYPE" "TYR WILD-TYPE" "TYR WILD-TYPE" "TYR WILD-TYPE" 
   TCGA-67-3774    TCGA-67-6215    TCGA-67-6216    TCGA-67-6217    TCGA-71-6725 
"TYR WILD-TYPE" "TYR WILD-TYPE" "TYR WILD-TYPE" "TYR WILD-TYPE" "TYR WILD-TYPE" 
   TCGA-73-4658    TCGA-73-4659    TCGA-73-4662    TCGA-73-4666    TCGA-73-4668 
"TYR WILD-TYPE" "TYR WILD-TYPE" "TYR WILD-TYPE" "TYR WILD-TYPE" "TYR WILD-TYPE" 
   TCGA-73-4670    TCGA-73-4675    TCGA-73-4676    TCGA-73-4677    TCGA-91-6828 
"TYR WILD-TYPE" "TYR WILD-TYPE" "TYR WILD-TYPE" "TYR WILD-TYPE" "TYR WILD-TYPE" 
   TCGA-91-6829    TCGA-91-6831    TCGA-91-6835    TCGA-91-6836 
"TYR WILD-TYPE" "TYR WILD-TYPE" "TYR WILD-TYPE" "TYR WILD-TYPE" 
   TCGA-05-4249    TCGA-05-4250    TCGA-05-4382    TCGA-05-4384    TCGA-05-4390 
"TYR WILD-TYPE" "TYR WILD-TYPE" "TYR WILD-TYPE" "TYR WILD-TYPE" "TYR WILD-TYPE" 
   TCGA-05-4396    TCGA-05-4397    TCGA-05-4398    TCGA-05-4402    TCGA-05-4405 
  "TYR MUTATED" "TYR WILD-TYPE" "TYR WILD-TYPE"   "TYR MUTATED" "TYR WILD-TYPE" 
   TCGA-05-4415    TCGA-05-4417    TCGA-05-4418    TCGA-05-4420    TCGA-05-4424 
"TYR WILD-TYPE" "TYR WILD-TYPE" "TYR WILD-TYPE" "TYR WILD-TYPE" "TYR WILD-TYPE" 
   TCGA-05-4426    TCGA-05-4427    TCGA-05-4430    TCGA-05-4432    TCGA-05-4433 
"TYR WILD-TYPE" "TYR WILD-TYPE" "TYR WILD-TYPE" "TYR WILD-TYPE" "TYR WILD-TYPE" 
   TCGA-05-4434    TCGA-05-5420    TCGA-05-5423    TCGA-05-5425    TCGA-05-5429 
"TYR WILD-TYPE" "TYR WILD-TYPE" "TYR WILD-TYPE" "TYR WILD-TYPE" "TYR WILD-TYPE" 
   TCGA-05-5715    TCGA-35-3615    TCGA-35-4122    TCGA-35-4123    TCGA-35-5375 
"TYR WILD-TYPE" "TYR WILD-TYPE" "TYR WILD-TYPE" "TYR WILD-TYPE" "TYR WILD-TYPE" 
   TCGA-38-4625    TCGA-38-4626    TCGA-38-4627    TCGA-38-4628    TCGA-38-4629 
"TYR WILD-TYPE" "TYR WILD-TYPE" "TYR WILD-TYPE" "TYR WILD-TYPE" "TYR WILD-TYPE" 
   TCGA-38-4630    TCGA-38-4631    TCGA-38-4632    TCGA-38-6178    TCGA-44-2655 
"TYR WILD-TYPE" "TYR WILD-TYPE" "TYR WILD-TYPE" "TYR WILD-TYPE" "TYR WILD-TYPE" 
   TCGA-44-2656    TCGA-44-2657    TCGA-44-2659    TCGA-44-2661    TCGA-44-2662 
"TYR WILD-TYPE"   "TYR MUTATED" "TYR WILD-TYPE" "TYR WILD-TYPE" "TYR WILD-TYPE" 
   TCGA-44-2665    TCGA-44-2666    TCGA-44-2668    TCGA-44-3396    TCGA-44-3398 
"TYR WILD-TYPE" "TYR WILD-TYPE" "TYR WILD-TYPE" "TYR WILD-TYPE" "TYR WILD-TYPE" 
   TCGA-44-3918    TCGA-44-3919    TCGA-44-4112    TCGA-44-5643    TCGA-44-5645 
  "TYR MUTATED" "TYR WILD-TYPE" "TYR WILD-TYPE" "TYR WILD-TYPE" "TYR WILD-TYPE" 
   TCGA-44-6144    TCGA-44-6145    TCGA-44-6146    TCGA-44-6147    TCGA-44-6148 
  "TYR MUTATED" "TYR WILD-TYPE" "TYR WILD-TYPE" "TYR WILD-TYPE" "TYR WILD-TYPE" 
   TCGA-44-6774    TCGA-44-6775    TCGA-44-6776    TCGA-44-6777    TCGA-44-6778 
"TYR WILD-TYPE" "TYR WILD-TYPE" "TYR WILD-TYPE" "TYR WILD-TYPE" "TYR WILD-TYPE" 
   TCGA-44-6779    TCGA-49-4486    TCGA-49-4487    TCGA-49-4488    TCGA-49-4490 
"TYR WILD-TYPE" "TYR WILD-TYPE" "TYR WILD-TYPE" "TYR WILD-TYPE" "TYR WILD-TYPE" 
   TCGA-49-4494    TCGA-49-4501    TCGA-49-4505    TCGA-49-4506    TCGA-49-4507 
"TYR WILD-TYPE" "TYR WILD-TYPE" "TYR WILD-TYPE" "TYR WILD-TYPE" "TYR WILD-TYPE" 
   TCGA-49-4510    TCGA-49-4512    TCGA-49-4514    TCGA-49-6742    TCGA-49-6743 
"TYR WILD-TYPE" "TYR WILD-TYPE"   "TYR MUTATED" "TYR WILD-TYPE" "TYR WILD-TYPE" 
   TCGA-49-6744    TCGA-49-6745    TCGA-50-5044    TCGA-50-5045    TCGA-50-5049 
"TYR WILD-TYPE" "TYR WILD-TYPE" "TYR WILD-TYPE" "TYR WILD-TYPE" "TYR WILD-TYPE" 
   TCGA-50-5051    TCGA-50-5055    TCGA-50-5066    TCGA-50-5068    TCGA-50-5072 
"TYR WILD-TYPE" "TYR WILD-TYPE" "TYR WILD-TYPE" "TYR WILD-TYPE" "TYR WILD-TYPE" 
   TCGA-50-5930    TCGA-50-5931    TCGA-50-5932    TCGA-50-5933    TCGA-50-5935 
"TYR WILD-TYPE" "TYR WILD-TYPE" "TYR WILD-TYPE" "TYR WILD-TYPE" "TYR WILD-TYPE" 
   TCGA-50-5936    TCGA-50-5939    TCGA-50-5941    TCGA-50-5942    TCGA-50-5944 
"TYR WILD-TYPE" "TYR WILD-TYPE" "TYR WILD-TYPE" "TYR WILD-TYPE" "TYR WILD-TYPE" 
   TCGA-50-5946    TCGA-50-6590    TCGA-50-6591    TCGA-50-6592    TCGA-50-6593 
"TYR WILD-TYPE"   "TYR MUTATED" "TYR WILD-TYPE" "TYR WILD-TYPE" "TYR WILD-TYPE" 
   TCGA-50-6594    TCGA-50-6595    TCGA-50-6597    TCGA-55-1592    TCGA-55-1594 
"TYR WILD-TYPE" "TYR WILD-TYPE" "TYR WILD-TYPE" "TYR WILD-TYPE" "TYR WILD-TYPE" 
   TCGA-55-1595    TCGA-55-1596    TCGA-55-5899    TCGA-55-6543    TCGA-55-6642 
"TYR WILD-TYPE" "TYR WILD-TYPE" "TYR WILD-TYPE" "TYR WILD-TYPE" "TYR WILD-TYPE" 
   TCGA-55-6712    TCGA-64-1676    TCGA-64-1677    TCGA-64-1678    TCGA-64-1680 
"TYR WILD-TYPE" "TYR WILD-TYPE" "TYR WILD-TYPE" "TYR WILD-TYPE" "TYR WILD-TYPE" 
   TCGA-64-5774    TCGA-64-5775    TCGA-64-5778    TCGA-64-5779    TCGA-64-5781 
"TYR WILD-TYPE" "TYR WILD-TYPE" "TYR WILD-TYPE"   "TYR MUTATED" "TYR WILD-TYPE" 
   TCGA-64-5815    TCGA-67-3770    TCGA-67-3771    TCGA-67-3772    TCGA-67-3773 
"TYR WILD-TYPE" "TYR WILD-TYPE" "TYR WILD-TYPE" "TYR WILD-TYPE" "TYR WILD-TYPE" 
   TCGA-67-3774    TCGA-67-6215    TCGA-67-6216    TCGA-67-6217    TCGA-71-6725 
"TYR WILD-TYPE" "TYR WILD-TYPE" "TYR WILD-TYPE" "TYR WILD-TYPE" "TYR WILD-TYPE" 
   TCGA-73-4658    TCGA-73-4659    TCGA-73-4662    TCGA-73-4666    TCGA-73-4668 
"TYR WILD-TYPE" "TYR WILD-TYPE" "TYR WILD-TYPE" "TYR WILD-TYPE" "TYR WILD-TYPE" 
   TCGA-73-4670    TCGA-73-4675    TCGA-73-4676    TCGA-73-4677    TCGA-91-6828 
"TYR WILD-TYPE" "TYR WILD-TYPE" "TYR WILD-TYPE" "TYR WILD-TYPE" "TYR WILD-TYPE" 
   TCGA-91-6829    TCGA-91-6831    TCGA-91-6835    TCGA-91-6836 
"TYR WILD-TYPE" "TYR WILD-TYPE" "TYR WILD-TYPE" "TYR WILD-TYPE" 
[1] "hr=" "1.4"
D106V2, continuous
D106V3, binary
[1] "tbl2"
               cls
clus            [,1] [,2]
  TYR MUTATED      6    4
  TYR WILD-TYPE   87   75
        clus
vv       TYR MUTATED TYR WILD-TYPE
  FEMALE           6            87
  MALE             4            75
D106V4, continuous
D106V5, multiclass
D106V6, multiclass
    clus
vv   TYR MUTATED TYR WILD-TYPE
  T1           3            38
  T2           5           103
  T3           1            13
  T4           1             7
D106V7, multiclass
       clus
vv      TYR MUTATED TYR WILD-TYPE
  N0              6            89
  N1              1            36
  N2+N3           1            34
D106V8, multiclass
    clus
vv   TYR MUTATED TYR WILD-TYPE
  M0           8           129
  M1           1             8
  MX           1            21
D106V9, multiclass
     clus
vv    TYR MUTATED TYR WILD-TYPE
  I             6            82
  II            1            32
  III           2            37
  IV            1             8
D106V10, binary
[1] "tbl2"
               cls
clus            [,1] [,2]
  TYR MUTATED      0   10
  TYR WILD-TYPE   16  146
     clus
vv    TYR MUTATED TYR WILD-TYPE
  NO            0            16
  YES          10           146
D106V11, continuous
D106V12, continuous
D106V13, multiclass
                                             clus
vv                                            TYR MUTATED TYR WILD-TYPE
  CURRENT REFORMED SMOKER FOR < OR = 15 YEARS           4            58
  CURRENT REFORMED SMOKER FOR > 15 YEARS                3            43
  CURRENT SMOKER                                        2            26
  LIFELONG NON-SMOKER                                   1            23
D106V14, continuous

Clustering(107) Variable = NTNG1 MUTATION ANALYSIS
D107V1, survival
                 sevent
clus2              0  1
  NTNG1 MUTATED    6  4
  NTNG1 WILD-TYPE 93 46
  NTNG1 MUTATED NTNG1 WILD-TYPE 
             10             139 
  NTNG1 MUTATED NTNG1 WILD-TYPE 
              4              46 
$`NTNG1 MUTATED`
TCGA-05-4396 TCGA-05-4427 TCGA-38-4631 TCGA-44-2668 TCGA-44-3398 TCGA-44-3918 
        9.96        26.01        11.64         8.09         8.32         6.44 
TCGA-49-4488 TCGA-50-6590 TCGA-55-5899 TCGA-73-4668 
       28.57        42.31         2.86        15.35 

$`NTNG1 WILD-TYPE`
TCGA-05-4249 TCGA-05-4250 TCGA-05-4382 TCGA-05-4384 TCGA-05-4390 TCGA-05-4397 
       38.07         3.98        19.92        14.01        37.02        24.03 
TCGA-05-4398 TCGA-05-4402 TCGA-05-4405 TCGA-05-4415 TCGA-05-4417 TCGA-05-4418 
       47.05         8.02        20.05         2.96        14.93         8.98 
TCGA-05-4420 TCGA-05-4424 TCGA-05-4426 TCGA-05-4430 TCGA-05-4432 TCGA-05-4433 
       29.95        30.02        26.01        25.02        25.02        24.00 
TCGA-05-4434 TCGA-05-5420 TCGA-05-5423 TCGA-05-5425 TCGA-05-5429 TCGA-05-5715 
       15.02         1.02         4.96         2.96         0.99         2.04 
TCGA-35-3615 TCGA-35-4122 TCGA-35-4123 TCGA-35-5375 TCGA-38-4625 TCGA-38-4626 
        0.46         7.36         5.95         8.68        47.61        85.32 
TCGA-38-4627 TCGA-38-4628 TCGA-38-4629 TCGA-38-4630 TCGA-38-4632 TCGA-38-6178 
       37.71        49.02        28.37        35.28        44.61         5.19 
TCGA-44-2655 TCGA-44-2656 TCGA-44-2657 TCGA-44-2659 TCGA-44-2661 TCGA-44-2662 
       18.87        19.10        13.15        17.39         3.39        15.78 
TCGA-44-2665 TCGA-44-2666 TCGA-44-3396 TCGA-44-3919 TCGA-44-4112 TCGA-44-5643 
       13.15         3.19        10.22         6.21         4.60         3.48 
TCGA-44-5645 TCGA-44-6144 TCGA-44-6145 TCGA-44-6146 TCGA-44-6147 TCGA-44-6148 
        6.84         0.30         3.35         9.93         7.76         3.12 
TCGA-44-6774 TCGA-44-6775 TCGA-44-6776 TCGA-44-6777 TCGA-44-6778 TCGA-44-6779 
        5.42         2.70        63.72        32.45        36.49        16.41 
TCGA-49-4486 TCGA-49-4487 TCGA-49-4490 TCGA-49-4494 TCGA-49-4501 TCGA-49-4505 
       76.21        28.11        12.66        35.54        46.72        14.07 
TCGA-49-4506 TCGA-49-4507 TCGA-49-4510 TCGA-49-4512 TCGA-49-4514 TCGA-49-6742 
       32.84         8.81        29.46        29.75        43.20        15.02 
TCGA-49-6743 TCGA-49-6744 TCGA-49-6745 TCGA-50-5044 TCGA-50-5045 TCGA-50-5049 
       12.13        12.99         4.93        20.48        71.47        48.82 
TCGA-50-5051 TCGA-50-5055 TCGA-50-5066 TCGA-50-5068 TCGA-50-5072 TCGA-50-5930 
       14.96        25.81         9.76        49.28         8.05         9.27 
TCGA-50-5931 TCGA-50-5932 TCGA-50-5933 TCGA-50-5935 TCGA-50-5936 TCGA-50-5939 
        8.78        35.87        77.88        21.47         8.45        15.12 
TCGA-50-5941 TCGA-50-5942 TCGA-50-5944 TCGA-50-5946 TCGA-50-6591 TCGA-50-6592 
        9.37         4.44        12.26        11.47         3.88        25.51 
TCGA-50-6593 TCGA-50-6594 TCGA-50-6595 TCGA-50-6597 TCGA-55-1592 TCGA-55-1594 
       11.05        12.16         6.21        33.37        23.05        38.73 
TCGA-55-1595 TCGA-55-1596 TCGA-55-6543 TCGA-55-6642 TCGA-55-6712 TCGA-64-1676 
       48.62        45.17         0.07        32.61         0.79        56.81 
TCGA-64-1677 TCGA-64-1678 TCGA-64-1680 TCGA-64-5774 TCGA-64-5775 TCGA-64-5778 
       20.65        39.09        37.02        83.84         0.10        30.44 
TCGA-64-5779 TCGA-64-5781 TCGA-64-5815 TCGA-67-3770 TCGA-67-3771 TCGA-67-3772 
       16.67        39.52         7.33         0.99         1.97         0.59 
TCGA-67-3773 TCGA-67-3774 TCGA-67-6215 TCGA-67-6216 TCGA-67-6217 TCGA-71-6725 
        2.04         0.59         0.89         0.69        13.87         2.01 
TCGA-73-4658 TCGA-73-4659 TCGA-73-4662 TCGA-73-4666 TCGA-73-4670 TCGA-73-4675 
       52.57        23.38        29.95        20.28         0.46         1.32 
TCGA-73-4676 TCGA-73-4677 TCGA-91-6828 TCGA-91-6829 TCGA-91-6831 TCGA-91-6835 
        4.01         1.25         1.22        41.33         1.28         1.15 
TCGA-91-6836 
        0.36 

  NTNG1 MUTATED NTNG1 WILD-TYPE 
           2.86            0.07 
  NTNG1 MUTATED NTNG1 WILD-TYPE 
          42.31           85.32 
  NTNG1 MUTATED NTNG1 WILD-TYPE 
          10.80           14.01 
[1] "2.9 - 42.3 (10.8)" "0.1 - 85.3 (14.0)"
     TCGA-05-4249      TCGA-05-4250      TCGA-05-4382      TCGA-05-4384 
"NTNG1 WILD-TYPE" "NTNG1 WILD-TYPE" "NTNG1 WILD-TYPE" "NTNG1 WILD-TYPE" 
     TCGA-05-4390      TCGA-05-4396      TCGA-05-4397      TCGA-05-4398 
"NTNG1 WILD-TYPE"   "NTNG1 MUTATED" "NTNG1 WILD-TYPE" "NTNG1 WILD-TYPE" 
     TCGA-05-4402      TCGA-05-4405      TCGA-05-4415      TCGA-05-4417 
"NTNG1 WILD-TYPE" "NTNG1 WILD-TYPE" "NTNG1 WILD-TYPE" "NTNG1 WILD-TYPE" 
     TCGA-05-4418      TCGA-05-4420      TCGA-05-4424      TCGA-05-4426 
"NTNG1 WILD-TYPE" "NTNG1 WILD-TYPE" "NTNG1 WILD-TYPE" "NTNG1 WILD-TYPE" 
     TCGA-05-4427      TCGA-05-4430      TCGA-05-4432      TCGA-05-4433 
  "NTNG1 MUTATED" "NTNG1 WILD-TYPE" "NTNG1 WILD-TYPE" "NTNG1 WILD-TYPE" 
     TCGA-05-4434      TCGA-05-5420      TCGA-05-5423      TCGA-05-5425 
"NTNG1 WILD-TYPE" "NTNG1 WILD-TYPE" "NTNG1 WILD-TYPE" "NTNG1 WILD-TYPE" 
     TCGA-05-5429      TCGA-05-5715      TCGA-35-3615      TCGA-35-4122 
"NTNG1 WILD-TYPE" "NTNG1 WILD-TYPE" "NTNG1 WILD-TYPE" "NTNG1 WILD-TYPE" 
     TCGA-35-4123      TCGA-35-5375      TCGA-38-4625      TCGA-38-4626 
"NTNG1 WILD-TYPE" "NTNG1 WILD-TYPE" "NTNG1 WILD-TYPE" "NTNG1 WILD-TYPE" 
     TCGA-38-4627      TCGA-38-4628      TCGA-38-4629      TCGA-38-4630 
"NTNG1 WILD-TYPE" "NTNG1 WILD-TYPE" "NTNG1 WILD-TYPE" "NTNG1 WILD-TYPE" 
     TCGA-38-4631      TCGA-38-4632      TCGA-38-6178      TCGA-44-2655 
  "NTNG1 MUTATED" "NTNG1 WILD-TYPE" "NTNG1 WILD-TYPE" "NTNG1 WILD-TYPE" 
     TCGA-44-2656      TCGA-44-2657      TCGA-44-2659      TCGA-44-2661 
"NTNG1 WILD-TYPE" "NTNG1 WILD-TYPE" "NTNG1 WILD-TYPE" "NTNG1 WILD-TYPE" 
     TCGA-44-2662      TCGA-44-2665      TCGA-44-2666      TCGA-44-2668 
"NTNG1 WILD-TYPE" "NTNG1 WILD-TYPE" "NTNG1 WILD-TYPE"   "NTNG1 MUTATED" 
     TCGA-44-3396      TCGA-44-3398      TCGA-44-3918      TCGA-44-3919 
"NTNG1 WILD-TYPE"   "NTNG1 MUTATED"   "NTNG1 MUTATED" "NTNG1 WILD-TYPE" 
     TCGA-44-4112      TCGA-44-5643      TCGA-44-5645      TCGA-44-6144 
"NTNG1 WILD-TYPE" "NTNG1 WILD-TYPE" "NTNG1 WILD-TYPE" "NTNG1 WILD-TYPE" 
     TCGA-44-6145      TCGA-44-6146      TCGA-44-6147      TCGA-44-6148 
"NTNG1 WILD-TYPE" "NTNG1 WILD-TYPE" "NTNG1 WILD-TYPE" "NTNG1 WILD-TYPE" 
     TCGA-44-6774      TCGA-44-6775      TCGA-44-6776      TCGA-44-6777 
"NTNG1 WILD-TYPE" "NTNG1 WILD-TYPE" "NTNG1 WILD-TYPE" "NTNG1 WILD-TYPE" 
     TCGA-44-6778      TCGA-44-6779      TCGA-49-4486      TCGA-49-4487 
"NTNG1 WILD-TYPE" "NTNG1 WILD-TYPE" "NTNG1 WILD-TYPE" "NTNG1 WILD-TYPE" 
     TCGA-49-4488      TCGA-49-4490      TCGA-49-4494      TCGA-49-4501 
  "NTNG1 MUTATED" "NTNG1 WILD-TYPE" "NTNG1 WILD-TYPE" "NTNG1 WILD-TYPE" 
     TCGA-49-4505      TCGA-49-4506      TCGA-49-4507      TCGA-49-4510 
"NTNG1 WILD-TYPE" "NTNG1 WILD-TYPE" "NTNG1 WILD-TYPE" "NTNG1 WILD-TYPE" 
     TCGA-49-4512      TCGA-49-4514      TCGA-49-6742      TCGA-49-6743 
"NTNG1 WILD-TYPE" "NTNG1 WILD-TYPE" "NTNG1 WILD-TYPE" "NTNG1 WILD-TYPE" 
     TCGA-49-6744      TCGA-49-6745      TCGA-50-5044      TCGA-50-5045 
"NTNG1 WILD-TYPE" "NTNG1 WILD-TYPE" "NTNG1 WILD-TYPE" "NTNG1 WILD-TYPE" 
     TCGA-50-5049      TCGA-50-5051      TCGA-50-5055      TCGA-50-5066 
"NTNG1 WILD-TYPE" "NTNG1 WILD-TYPE" "NTNG1 WILD-TYPE" "NTNG1 WILD-TYPE" 
     TCGA-50-5068      TCGA-50-5072      TCGA-50-5930      TCGA-50-5931 
"NTNG1 WILD-TYPE" "NTNG1 WILD-TYPE" "NTNG1 WILD-TYPE" "NTNG1 WILD-TYPE" 
     TCGA-50-5932      TCGA-50-5933      TCGA-50-5935      TCGA-50-5936 
"NTNG1 WILD-TYPE" "NTNG1 WILD-TYPE" "NTNG1 WILD-TYPE" "NTNG1 WILD-TYPE" 
     TCGA-50-5939      TCGA-50-5941      TCGA-50-5942      TCGA-50-5944 
"NTNG1 WILD-TYPE" "NTNG1 WILD-TYPE" "NTNG1 WILD-TYPE" "NTNG1 WILD-TYPE" 
     TCGA-50-5946      TCGA-50-6590      TCGA-50-6591      TCGA-50-6592 
"NTNG1 WILD-TYPE"   "NTNG1 MUTATED" "NTNG1 WILD-TYPE" "NTNG1 WILD-TYPE" 
     TCGA-50-6593      TCGA-50-6594      TCGA-50-6595      TCGA-50-6597 
"NTNG1 WILD-TYPE" "NTNG1 WILD-TYPE" "NTNG1 WILD-TYPE" "NTNG1 WILD-TYPE" 
     TCGA-55-1592      TCGA-55-1594      TCGA-55-1595      TCGA-55-1596 
"NTNG1 WILD-TYPE" "NTNG1 WILD-TYPE" "NTNG1 WILD-TYPE" "NTNG1 WILD-TYPE" 
     TCGA-55-5899      TCGA-55-6543      TCGA-55-6642      TCGA-55-6712 
  "NTNG1 MUTATED" "NTNG1 WILD-TYPE" "NTNG1 WILD-TYPE" "NTNG1 WILD-TYPE" 
     TCGA-64-1676      TCGA-64-1677      TCGA-64-1678      TCGA-64-1680 
"NTNG1 WILD-TYPE" "NTNG1 WILD-TYPE" "NTNG1 WILD-TYPE" "NTNG1 WILD-TYPE" 
     TCGA-64-5774      TCGA-64-5775      TCGA-64-5778      TCGA-64-5779 
"NTNG1 WILD-TYPE" "NTNG1 WILD-TYPE" "NTNG1 WILD-TYPE" "NTNG1 WILD-TYPE" 
     TCGA-64-5781      TCGA-64-5815      TCGA-67-3770      TCGA-67-3771 
"NTNG1 WILD-TYPE" "NTNG1 WILD-TYPE" "NTNG1 WILD-TYPE" "NTNG1 WILD-TYPE" 
     TCGA-67-3772      TCGA-67-3773      TCGA-67-3774      TCGA-67-6215 
"NTNG1 WILD-TYPE" "NTNG1 WILD-TYPE" "NTNG1 WILD-TYPE" "NTNG1 WILD-TYPE" 
     TCGA-67-6216      TCGA-67-6217      TCGA-71-6725      TCGA-73-4658 
"NTNG1 WILD-TYPE" "NTNG1 WILD-TYPE" "NTNG1 WILD-TYPE" "NTNG1 WILD-TYPE" 
     TCGA-73-4659      TCGA-73-4662      TCGA-73-4666      TCGA-73-4668 
"NTNG1 WILD-TYPE" "NTNG1 WILD-TYPE" "NTNG1 WILD-TYPE"   "NTNG1 MUTATED" 
     TCGA-73-4670      TCGA-73-4675      TCGA-73-4676      TCGA-73-4677 
"NTNG1 WILD-TYPE" "NTNG1 WILD-TYPE" "NTNG1 WILD-TYPE" "NTNG1 WILD-TYPE" 
     TCGA-91-6828      TCGA-91-6829      TCGA-91-6831      TCGA-91-6835 
"NTNG1 WILD-TYPE" "NTNG1 WILD-TYPE" "NTNG1 WILD-TYPE" "NTNG1 WILD-TYPE" 
     TCGA-91-6836 
"NTNG1 WILD-TYPE" 
     TCGA-05-4249      TCGA-05-4250      TCGA-05-4382      TCGA-05-4384 
"NTNG1 WILD-TYPE" "NTNG1 WILD-TYPE" "NTNG1 WILD-TYPE" "NTNG1 WILD-TYPE" 
     TCGA-05-4390      TCGA-05-4396      TCGA-05-4397      TCGA-05-4398 
"NTNG1 WILD-TYPE"   "NTNG1 MUTATED" "NTNG1 WILD-TYPE" "NTNG1 WILD-TYPE" 
     TCGA-05-4402      TCGA-05-4405      TCGA-05-4415      TCGA-05-4417 
"NTNG1 WILD-TYPE" "NTNG1 WILD-TYPE" "NTNG1 WILD-TYPE" "NTNG1 WILD-TYPE" 
     TCGA-05-4418      TCGA-05-4420      TCGA-05-4424      TCGA-05-4426 
"NTNG1 WILD-TYPE" "NTNG1 WILD-TYPE" "NTNG1 WILD-TYPE" "NTNG1 WILD-TYPE" 
     TCGA-05-4427      TCGA-05-4430      TCGA-05-4432      TCGA-05-4433 
  "NTNG1 MUTATED" "NTNG1 WILD-TYPE" "NTNG1 WILD-TYPE" "NTNG1 WILD-TYPE" 
     TCGA-05-4434      TCGA-05-5420      TCGA-05-5423      TCGA-05-5425 
"NTNG1 WILD-TYPE" "NTNG1 WILD-TYPE" "NTNG1 WILD-TYPE" "NTNG1 WILD-TYPE" 
     TCGA-05-5429      TCGA-05-5715      TCGA-35-3615      TCGA-35-4122 
"NTNG1 WILD-TYPE" "NTNG1 WILD-TYPE" "NTNG1 WILD-TYPE" "NTNG1 WILD-TYPE" 
     TCGA-35-4123      TCGA-35-5375      TCGA-38-4625      TCGA-38-4626 
"NTNG1 WILD-TYPE" "NTNG1 WILD-TYPE" "NTNG1 WILD-TYPE" "NTNG1 WILD-TYPE" 
     TCGA-38-4627      TCGA-38-4628      TCGA-38-4629      TCGA-38-4630 
"NTNG1 WILD-TYPE" "NTNG1 WILD-TYPE" "NTNG1 WILD-TYPE" "NTNG1 WILD-TYPE" 
     TCGA-38-4631      TCGA-38-4632      TCGA-38-6178      TCGA-44-2655 
  "NTNG1 MUTATED" "NTNG1 WILD-TYPE" "NTNG1 WILD-TYPE" "NTNG1 WILD-TYPE" 
     TCGA-44-2656      TCGA-44-2657      TCGA-44-2659      TCGA-44-2661 
"NTNG1 WILD-TYPE" "NTNG1 WILD-TYPE" "NTNG1 WILD-TYPE" "NTNG1 WILD-TYPE" 
     TCGA-44-2662      TCGA-44-2665      TCGA-44-2666      TCGA-44-2668 
"NTNG1 WILD-TYPE" "NTNG1 WILD-TYPE" "NTNG1 WILD-TYPE"   "NTNG1 MUTATED" 
     TCGA-44-3396      TCGA-44-3398      TCGA-44-3918      TCGA-44-3919 
"NTNG1 WILD-TYPE"   "NTNG1 MUTATED"   "NTNG1 MUTATED" "NTNG1 WILD-TYPE" 
     TCGA-44-4112      TCGA-44-5643      TCGA-44-5645      TCGA-44-6144 
"NTNG1 WILD-TYPE" "NTNG1 WILD-TYPE" "NTNG1 WILD-TYPE" "NTNG1 WILD-TYPE" 
     TCGA-44-6145      TCGA-44-6146      TCGA-44-6147      TCGA-44-6148 
"NTNG1 WILD-TYPE" "NTNG1 WILD-TYPE" "NTNG1 WILD-TYPE" "NTNG1 WILD-TYPE" 
     TCGA-44-6774      TCGA-44-6775      TCGA-44-6776      TCGA-44-6777 
"NTNG1 WILD-TYPE" "NTNG1 WILD-TYPE" "NTNG1 WILD-TYPE" "NTNG1 WILD-TYPE" 
     TCGA-44-6778      TCGA-44-6779      TCGA-49-4486      TCGA-49-4487 
"NTNG1 WILD-TYPE" "NTNG1 WILD-TYPE" "NTNG1 WILD-TYPE" "NTNG1 WILD-TYPE" 
     TCGA-49-4488      TCGA-49-4490      TCGA-49-4494      TCGA-49-4501 
  "NTNG1 MUTATED" "NTNG1 WILD-TYPE" "NTNG1 WILD-TYPE" "NTNG1 WILD-TYPE" 
     TCGA-49-4505      TCGA-49-4506      TCGA-49-4507      TCGA-49-4510 
"NTNG1 WILD-TYPE" "NTNG1 WILD-TYPE" "NTNG1 WILD-TYPE" "NTNG1 WILD-TYPE" 
     TCGA-49-4512      TCGA-49-4514      TCGA-49-6742      TCGA-49-6743 
"NTNG1 WILD-TYPE" "NTNG1 WILD-TYPE" "NTNG1 WILD-TYPE" "NTNG1 WILD-TYPE" 
     TCGA-49-6744      TCGA-49-6745      TCGA-50-5044      TCGA-50-5045 
"NTNG1 WILD-TYPE" "NTNG1 WILD-TYPE" "NTNG1 WILD-TYPE" "NTNG1 WILD-TYPE" 
     TCGA-50-5049      TCGA-50-5051      TCGA-50-5055      TCGA-50-5066 
"NTNG1 WILD-TYPE" "NTNG1 WILD-TYPE" "NTNG1 WILD-TYPE" "NTNG1 WILD-TYPE" 
     TCGA-50-5068      TCGA-50-5072      TCGA-50-5930      TCGA-50-5931 
"NTNG1 WILD-TYPE" "NTNG1 WILD-TYPE" "NTNG1 WILD-TYPE" "NTNG1 WILD-TYPE" 
     TCGA-50-5932      TCGA-50-5933      TCGA-50-5935      TCGA-50-5936 
"NTNG1 WILD-TYPE" "NTNG1 WILD-TYPE" "NTNG1 WILD-TYPE" "NTNG1 WILD-TYPE" 
     TCGA-50-5939      TCGA-50-5941      TCGA-50-5942      TCGA-50-5944 
"NTNG1 WILD-TYPE" "NTNG1 WILD-TYPE" "NTNG1 WILD-TYPE" "NTNG1 WILD-TYPE" 
     TCGA-50-5946      TCGA-50-6590      TCGA-50-6591      TCGA-50-6592 
"NTNG1 WILD-TYPE"   "NTNG1 MUTATED" "NTNG1 WILD-TYPE" "NTNG1 WILD-TYPE" 
     TCGA-50-6593      TCGA-50-6594      TCGA-50-6595      TCGA-50-6597 
"NTNG1 WILD-TYPE" "NTNG1 WILD-TYPE" "NTNG1 WILD-TYPE" "NTNG1 WILD-TYPE" 
     TCGA-55-1592      TCGA-55-1594      TCGA-55-1595      TCGA-55-1596 
"NTNG1 WILD-TYPE" "NTNG1 WILD-TYPE" "NTNG1 WILD-TYPE" "NTNG1 WILD-TYPE" 
     TCGA-55-5899      TCGA-55-6543      TCGA-55-6642      TCGA-55-6712 
  "NTNG1 MUTATED" "NTNG1 WILD-TYPE" "NTNG1 WILD-TYPE" "NTNG1 WILD-TYPE" 
     TCGA-64-1676      TCGA-64-1677      TCGA-64-1678      TCGA-64-1680 
"NTNG1 WILD-TYPE" "NTNG1 WILD-TYPE" "NTNG1 WILD-TYPE" "NTNG1 WILD-TYPE" 
     TCGA-64-5774      TCGA-64-5775      TCGA-64-5778      TCGA-64-5779 
"NTNG1 WILD-TYPE" "NTNG1 WILD-TYPE" "NTNG1 WILD-TYPE" "NTNG1 WILD-TYPE" 
     TCGA-64-5781      TCGA-64-5815      TCGA-67-3770      TCGA-67-3771 
"NTNG1 WILD-TYPE" "NTNG1 WILD-TYPE" "NTNG1 WILD-TYPE" "NTNG1 WILD-TYPE" 
     TCGA-67-3772      TCGA-67-3773      TCGA-67-3774      TCGA-67-6215 
"NTNG1 WILD-TYPE" "NTNG1 WILD-TYPE" "NTNG1 WILD-TYPE" "NTNG1 WILD-TYPE" 
     TCGA-67-6216      TCGA-67-6217      TCGA-71-6725      TCGA-73-4658 
"NTNG1 WILD-TYPE" "NTNG1 WILD-TYPE" "NTNG1 WILD-TYPE" "NTNG1 WILD-TYPE" 
     TCGA-73-4659      TCGA-73-4662      TCGA-73-4666      TCGA-73-4668 
"NTNG1 WILD-TYPE" "NTNG1 WILD-TYPE" "NTNG1 WILD-TYPE"   "NTNG1 MUTATED" 
     TCGA-73-4670      TCGA-73-4675      TCGA-73-4676      TCGA-73-4677 
"NTNG1 WILD-TYPE" "NTNG1 WILD-TYPE" "NTNG1 WILD-TYPE" "NTNG1 WILD-TYPE" 
     TCGA-91-6828      TCGA-91-6829      TCGA-91-6831      TCGA-91-6835 
"NTNG1 WILD-TYPE" "NTNG1 WILD-TYPE" "NTNG1 WILD-TYPE" "NTNG1 WILD-TYPE" 
     TCGA-91-6836 
"NTNG1 WILD-TYPE" 
     TCGA-05-4249      TCGA-05-4250      TCGA-05-4382      TCGA-05-4384 
"NTNG1 WILD-TYPE" "NTNG1 WILD-TYPE" "NTNG1 WILD-TYPE" "NTNG1 WILD-TYPE" 
     TCGA-05-4390      TCGA-05-4396      TCGA-05-4397      TCGA-05-4398 
"NTNG1 WILD-TYPE"   "NTNG1 MUTATED" "NTNG1 WILD-TYPE" "NTNG1 WILD-TYPE" 
     TCGA-05-4402      TCGA-05-4405      TCGA-05-4415      TCGA-05-4417 
"NTNG1 WILD-TYPE" "NTNG1 WILD-TYPE" "NTNG1 WILD-TYPE" "NTNG1 WILD-TYPE" 
     TCGA-05-4418      TCGA-05-4420      TCGA-05-4424      TCGA-05-4426 
"NTNG1 WILD-TYPE" "NTNG1 WILD-TYPE" "NTNG1 WILD-TYPE" "NTNG1 WILD-TYPE" 
     TCGA-05-4427      TCGA-05-4430      TCGA-05-4432      TCGA-05-4433 
  "NTNG1 MUTATED" "NTNG1 WILD-TYPE" "NTNG1 WILD-TYPE" "NTNG1 WILD-TYPE" 
     TCGA-05-4434      TCGA-05-5420      TCGA-05-5423      TCGA-05-5425 
"NTNG1 WILD-TYPE" "NTNG1 WILD-TYPE" "NTNG1 WILD-TYPE" "NTNG1 WILD-TYPE" 
     TCGA-05-5429      TCGA-05-5715      TCGA-35-3615      TCGA-35-4122 
"NTNG1 WILD-TYPE" "NTNG1 WILD-TYPE" "NTNG1 WILD-TYPE" "NTNG1 WILD-TYPE" 
     TCGA-35-4123      TCGA-35-5375      TCGA-38-4625      TCGA-38-4626 
"NTNG1 WILD-TYPE" "NTNG1 WILD-TYPE" "NTNG1 WILD-TYPE" "NTNG1 WILD-TYPE" 
     TCGA-38-4627      TCGA-38-4628      TCGA-38-4629      TCGA-38-4630 
"NTNG1 WILD-TYPE" "NTNG1 WILD-TYPE" "NTNG1 WILD-TYPE" "NTNG1 WILD-TYPE" 
     TCGA-38-4631      TCGA-38-4632      TCGA-38-6178      TCGA-44-2655 
  "NTNG1 MUTATED" "NTNG1 WILD-TYPE" "NTNG1 WILD-TYPE" "NTNG1 WILD-TYPE" 
     TCGA-44-2656      TCGA-44-2657      TCGA-44-2659      TCGA-44-2661 
"NTNG1 WILD-TYPE" "NTNG1 WILD-TYPE" "NTNG1 WILD-TYPE" "NTNG1 WILD-TYPE" 
     TCGA-44-2662      TCGA-44-2665      TCGA-44-2666      TCGA-44-2668 
"NTNG1 WILD-TYPE" "NTNG1 WILD-TYPE" "NTNG1 WILD-TYPE"   "NTNG1 MUTATED" 
     TCGA-44-3396      TCGA-44-3398      TCGA-44-3918      TCGA-44-3919 
"NTNG1 WILD-TYPE"   "NTNG1 MUTATED"   "NTNG1 MUTATED" "NTNG1 WILD-TYPE" 
     TCGA-44-4112      TCGA-44-5643      TCGA-44-5645      TCGA-44-6144 
"NTNG1 WILD-TYPE" "NTNG1 WILD-TYPE" "NTNG1 WILD-TYPE" "NTNG1 WILD-TYPE" 
     TCGA-44-6145      TCGA-44-6146      TCGA-44-6147      TCGA-44-6148 
"NTNG1 WILD-TYPE" "NTNG1 WILD-TYPE" "NTNG1 WILD-TYPE" "NTNG1 WILD-TYPE" 
     TCGA-44-6774      TCGA-44-6775      TCGA-44-6776      TCGA-44-6777 
"NTNG1 WILD-TYPE" "NTNG1 WILD-TYPE" "NTNG1 WILD-TYPE" "NTNG1 WILD-TYPE" 
     TCGA-44-6778      TCGA-44-6779      TCGA-49-4486      TCGA-49-4487 
"NTNG1 WILD-TYPE" "NTNG1 WILD-TYPE" "NTNG1 WILD-TYPE" "NTNG1 WILD-TYPE" 
     TCGA-49-4488      TCGA-49-4490      TCGA-49-4494      TCGA-49-4501 
  "NTNG1 MUTATED" "NTNG1 WILD-TYPE" "NTNG1 WILD-TYPE" "NTNG1 WILD-TYPE" 
     TCGA-49-4505      TCGA-49-4506      TCGA-49-4507      TCGA-49-4510 
"NTNG1 WILD-TYPE" "NTNG1 WILD-TYPE" "NTNG1 WILD-TYPE" "NTNG1 WILD-TYPE" 
     TCGA-49-4512      TCGA-49-4514      TCGA-49-6742      TCGA-49-6743 
"NTNG1 WILD-TYPE" "NTNG1 WILD-TYPE" "NTNG1 WILD-TYPE" "NTNG1 WILD-TYPE" 
     TCGA-49-6744      TCGA-49-6745      TCGA-50-5044      TCGA-50-5045 
"NTNG1 WILD-TYPE" "NTNG1 WILD-TYPE" "NTNG1 WILD-TYPE" "NTNG1 WILD-TYPE" 
     TCGA-50-5049      TCGA-50-5051      TCGA-50-5055      TCGA-50-5066 
"NTNG1 WILD-TYPE" "NTNG1 WILD-TYPE" "NTNG1 WILD-TYPE" "NTNG1 WILD-TYPE" 
     TCGA-50-5068      TCGA-50-5072      TCGA-50-5930      TCGA-50-5931 
"NTNG1 WILD-TYPE" "NTNG1 WILD-TYPE" "NTNG1 WILD-TYPE" "NTNG1 WILD-TYPE" 
     TCGA-50-5932      TCGA-50-5933      TCGA-50-5935      TCGA-50-5936 
"NTNG1 WILD-TYPE" "NTNG1 WILD-TYPE" "NTNG1 WILD-TYPE" "NTNG1 WILD-TYPE" 
     TCGA-50-5939      TCGA-50-5941      TCGA-50-5942      TCGA-50-5944 
"NTNG1 WILD-TYPE" "NTNG1 WILD-TYPE" "NTNG1 WILD-TYPE" "NTNG1 WILD-TYPE" 
     TCGA-50-5946      TCGA-50-6590      TCGA-50-6591      TCGA-50-6592 
"NTNG1 WILD-TYPE"   "NTNG1 MUTATED" "NTNG1 WILD-TYPE" "NTNG1 WILD-TYPE" 
     TCGA-50-6593      TCGA-50-6594      TCGA-50-6595      TCGA-50-6597 
"NTNG1 WILD-TYPE" "NTNG1 WILD-TYPE" "NTNG1 WILD-TYPE" "NTNG1 WILD-TYPE" 
     TCGA-55-1592      TCGA-55-1594      TCGA-55-1595      TCGA-55-1596 
"NTNG1 WILD-TYPE" "NTNG1 WILD-TYPE" "NTNG1 WILD-TYPE" "NTNG1 WILD-TYPE" 
     TCGA-55-5899      TCGA-55-6543      TCGA-55-6642      TCGA-55-6712 
  "NTNG1 MUTATED" "NTNG1 WILD-TYPE" "NTNG1 WILD-TYPE" "NTNG1 WILD-TYPE" 
     TCGA-64-1676      TCGA-64-1677      TCGA-64-1678      TCGA-64-1680 
"NTNG1 WILD-TYPE" "NTNG1 WILD-TYPE" "NTNG1 WILD-TYPE" "NTNG1 WILD-TYPE" 
     TCGA-64-5774      TCGA-64-5775      TCGA-64-5778      TCGA-64-5779 
"NTNG1 WILD-TYPE" "NTNG1 WILD-TYPE" "NTNG1 WILD-TYPE" "NTNG1 WILD-TYPE" 
     TCGA-64-5781      TCGA-64-5815      TCGA-67-3770      TCGA-67-3771 
"NTNG1 WILD-TYPE" "NTNG1 WILD-TYPE" "NTNG1 WILD-TYPE" "NTNG1 WILD-TYPE" 
     TCGA-67-3772      TCGA-67-3773      TCGA-67-3774      TCGA-67-6215 
"NTNG1 WILD-TYPE" "NTNG1 WILD-TYPE" "NTNG1 WILD-TYPE" "NTNG1 WILD-TYPE" 
     TCGA-67-6216      TCGA-67-6217      TCGA-71-6725      TCGA-73-4658 
"NTNG1 WILD-TYPE" "NTNG1 WILD-TYPE" "NTNG1 WILD-TYPE" "NTNG1 WILD-TYPE" 
     TCGA-73-4659      TCGA-73-4662      TCGA-73-4666      TCGA-73-4668 
"NTNG1 WILD-TYPE" "NTNG1 WILD-TYPE" "NTNG1 WILD-TYPE"   "NTNG1 MUTATED" 
     TCGA-73-4670      TCGA-73-4675      TCGA-73-4676      TCGA-73-4677 
"NTNG1 WILD-TYPE" "NTNG1 WILD-TYPE" "NTNG1 WILD-TYPE" "NTNG1 WILD-TYPE" 
     TCGA-91-6828      TCGA-91-6829      TCGA-91-6831      TCGA-91-6835 
"NTNG1 WILD-TYPE" "NTNG1 WILD-TYPE" "NTNG1 WILD-TYPE" "NTNG1 WILD-TYPE" 
     TCGA-91-6836 
"NTNG1 WILD-TYPE" 
[1] "hr=" "1.8"
D107V2, continuous
D107V3, binary
[1] "tbl2"
                 cls
clus              [,1] [,2]
  NTNG1 MUTATED      7    4
  NTNG1 WILD-TYPE   86   75
        clus
vv       NTNG1 MUTATED NTNG1 WILD-TYPE
  FEMALE             7              86
  MALE               4              75
D107V4, continuous
[1] "Remove cluster labels:" "NTNG1 MUTATED"         
clus
  NTNG1 MUTATED NTNG1 WILD-TYPE 
              1              11 
     TCGA-35-4122      TCGA-35-4123      TCGA-35-5375      TCGA-64-1677 
"NTNG1 WILD-TYPE" "NTNG1 WILD-TYPE" "NTNG1 WILD-TYPE" "NTNG1 WILD-TYPE" 
     TCGA-64-5778      TCGA-71-6725      TCGA-73-4659      TCGA-73-4662 
"NTNG1 WILD-TYPE" "NTNG1 WILD-TYPE" "NTNG1 WILD-TYPE" "NTNG1 WILD-TYPE" 
     TCGA-73-4666      TCGA-73-4676      TCGA-75-5122 
"NTNG1 WILD-TYPE" "NTNG1 WILD-TYPE" "NTNG1 WILD-TYPE" 
D107V5, multiclass
D107V6, multiclass
    clus
vv   NTNG1 MUTATED NTNG1 WILD-TYPE
  T1             4              37
  T2             6             102
  T3             0              14
  T4             1               7
D107V7, multiclass
       clus
vv      NTNG1 MUTATED NTNG1 WILD-TYPE
  N0                7              88
  N1                4              33
  N2+N3             0              35
D107V8, multiclass
    clus
vv   NTNG1 MUTATED NTNG1 WILD-TYPE
  M0            10             127
  M1             0               9
  MX             1              21
D107V9, multiclass
     clus
vv    NTNG1 MUTATED NTNG1 WILD-TYPE
  I               8              80
  II              2              31
  III             1              38
  IV              0               9
D107V10, binary
[1] "tbl2"
                 cls
clus              [,1] [,2]
  NTNG1 MUTATED      0   11
  NTNG1 WILD-TYPE   16  145
     clus
vv    NTNG1 MUTATED NTNG1 WILD-TYPE
  NO              0              16
  YES            11             145
D107V11, continuous
D107V12, continuous
D107V13, multiclass
                                             clus
vv                                            NTNG1 MUTATED NTNG1 WILD-TYPE
  CURRENT REFORMED SMOKER FOR < OR = 15 YEARS             7              55
  CURRENT REFORMED SMOKER FOR > 15 YEARS                  3              43
  CURRENT SMOKER                                          1              27
  LIFELONG NON-SMOKER                                     0              24
D107V14, continuous

Clustering(108) Variable = OR10G8 MUTATION ANALYSIS
D108V1, survival
                  sevent
clus2               0  1
  OR10G8 MUTATED    4  2
  OR10G8 WILD-TYPE 95 48
  OR10G8 MUTATED OR10G8 WILD-TYPE 
               6              143 
  OR10G8 MUTATED OR10G8 WILD-TYPE 
               2               48 
$`OR10G8 MUTATED`
TCGA-05-4382 TCGA-35-4122 TCGA-44-6144 TCGA-50-5933 TCGA-50-6592 TCGA-64-1676 
       19.92         7.36         0.30        77.88        25.51        56.81 

$`OR10G8 WILD-TYPE`
TCGA-05-4249 TCGA-05-4250 TCGA-05-4384 TCGA-05-4390 TCGA-05-4396 TCGA-05-4397 
       38.07         3.98        14.01        37.02         9.96        24.03 
TCGA-05-4398 TCGA-05-4402 TCGA-05-4405 TCGA-05-4415 TCGA-05-4417 TCGA-05-4418 
       47.05         8.02        20.05         2.96        14.93         8.98 
TCGA-05-4420 TCGA-05-4424 TCGA-05-4426 TCGA-05-4427 TCGA-05-4430 TCGA-05-4432 
       29.95        30.02        26.01        26.01        25.02        25.02 
TCGA-05-4433 TCGA-05-4434 TCGA-05-5420 TCGA-05-5423 TCGA-05-5425 TCGA-05-5429 
       24.00        15.02         1.02         4.96         2.96         0.99 
TCGA-05-5715 TCGA-35-3615 TCGA-35-4123 TCGA-35-5375 TCGA-38-4625 TCGA-38-4626 
        2.04         0.46         5.95         8.68        47.61        85.32 
TCGA-38-4627 TCGA-38-4628 TCGA-38-4629 TCGA-38-4630 TCGA-38-4631 TCGA-38-4632 
       37.71        49.02        28.37        35.28        11.64        44.61 
TCGA-38-6178 TCGA-44-2655 TCGA-44-2656 TCGA-44-2657 TCGA-44-2659 TCGA-44-2661 
        5.19        18.87        19.10        13.15        17.39         3.39 
TCGA-44-2662 TCGA-44-2665 TCGA-44-2666 TCGA-44-2668 TCGA-44-3396 TCGA-44-3398 
       15.78        13.15         3.19         8.09        10.22         8.32 
TCGA-44-3918 TCGA-44-3919 TCGA-44-4112 TCGA-44-5643 TCGA-44-5645 TCGA-44-6145 
        6.44         6.21         4.60         3.48         6.84         3.35 
TCGA-44-6146 TCGA-44-6147 TCGA-44-6148 TCGA-44-6774 TCGA-44-6775 TCGA-44-6776 
        9.93         7.76         3.12         5.42         2.70        63.72 
TCGA-44-6777 TCGA-44-6778 TCGA-44-6779 TCGA-49-4486 TCGA-49-4487 TCGA-49-4488 
       32.45        36.49        16.41        76.21        28.11        28.57 
TCGA-49-4490 TCGA-49-4494 TCGA-49-4501 TCGA-49-4505 TCGA-49-4506 TCGA-49-4507 
       12.66        35.54        46.72        14.07        32.84         8.81 
TCGA-49-4510 TCGA-49-4512 TCGA-49-4514 TCGA-49-6742 TCGA-49-6743 TCGA-49-6744 
       29.46        29.75        43.20        15.02        12.13        12.99 
TCGA-49-6745 TCGA-50-5044 TCGA-50-5045 TCGA-50-5049 TCGA-50-5051 TCGA-50-5055 
        4.93        20.48        71.47        48.82        14.96        25.81 
TCGA-50-5066 TCGA-50-5068 TCGA-50-5072 TCGA-50-5930 TCGA-50-5931 TCGA-50-5932 
        9.76        49.28         8.05         9.27         8.78        35.87 
TCGA-50-5935 TCGA-50-5936 TCGA-50-5939 TCGA-50-5941 TCGA-50-5942 TCGA-50-5944 
       21.47         8.45        15.12         9.37         4.44        12.26 
TCGA-50-5946 TCGA-50-6590 TCGA-50-6591 TCGA-50-6593 TCGA-50-6594 TCGA-50-6595 
       11.47        42.31         3.88        11.05        12.16         6.21 
TCGA-50-6597 TCGA-55-1592 TCGA-55-1594 TCGA-55-1595 TCGA-55-1596 TCGA-55-5899 
       33.37        23.05        38.73        48.62        45.17         2.86 
TCGA-55-6543 TCGA-55-6642 TCGA-55-6712 TCGA-64-1677 TCGA-64-1678 TCGA-64-1680 
        0.07        32.61         0.79        20.65        39.09        37.02 
TCGA-64-5774 TCGA-64-5775 TCGA-64-5778 TCGA-64-5779 TCGA-64-5781 TCGA-64-5815 
       83.84         0.10        30.44        16.67        39.52         7.33 
TCGA-67-3770 TCGA-67-3771 TCGA-67-3772 TCGA-67-3773 TCGA-67-3774 TCGA-67-6215 
        0.99         1.97         0.59         2.04         0.59         0.89 
TCGA-67-6216 TCGA-67-6217 TCGA-71-6725 TCGA-73-4658 TCGA-73-4659 TCGA-73-4662 
        0.69        13.87         2.01        52.57        23.38        29.95 
TCGA-73-4666 TCGA-73-4668 TCGA-73-4670 TCGA-73-4675 TCGA-73-4676 TCGA-73-4677 
       20.28        15.35         0.46         1.32         4.01         1.25 
TCGA-91-6828 TCGA-91-6829 TCGA-91-6831 TCGA-91-6835 TCGA-91-6836 
        1.22        41.33         1.28         1.15         0.36 

  OR10G8 MUTATED OR10G8 WILD-TYPE 
            0.30             0.07 
  OR10G8 MUTATED OR10G8 WILD-TYPE 
           77.88            85.32 
  OR10G8 MUTATED OR10G8 WILD-TYPE 
          22.715           13.150 
[1] "0.3 - 77.9 (22.7)" "0.1 - 85.3 (13.2)"
      TCGA-05-4249       TCGA-05-4250       TCGA-05-4382       TCGA-05-4384 
"OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE"   "OR10G8 MUTATED" "OR10G8 WILD-TYPE" 
      TCGA-05-4390       TCGA-05-4396       TCGA-05-4397       TCGA-05-4398 
"OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" 
      TCGA-05-4402       TCGA-05-4405       TCGA-05-4415       TCGA-05-4417 
"OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" 
      TCGA-05-4418       TCGA-05-4420       TCGA-05-4424       TCGA-05-4426 
"OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" 
      TCGA-05-4427       TCGA-05-4430       TCGA-05-4432       TCGA-05-4433 
"OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" 
      TCGA-05-4434       TCGA-05-5420       TCGA-05-5423       TCGA-05-5425 
"OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" 
      TCGA-05-5429       TCGA-05-5715       TCGA-35-3615       TCGA-35-4122 
"OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE"   "OR10G8 MUTATED" 
      TCGA-35-4123       TCGA-35-5375       TCGA-38-4625       TCGA-38-4626 
"OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" 
      TCGA-38-4627       TCGA-38-4628       TCGA-38-4629       TCGA-38-4630 
"OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" 
      TCGA-38-4631       TCGA-38-4632       TCGA-38-6178       TCGA-44-2655 
"OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" 
      TCGA-44-2656       TCGA-44-2657       TCGA-44-2659       TCGA-44-2661 
"OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" 
      TCGA-44-2662       TCGA-44-2665       TCGA-44-2666       TCGA-44-2668 
"OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" 
      TCGA-44-3396       TCGA-44-3398       TCGA-44-3918       TCGA-44-3919 
"OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" 
      TCGA-44-4112       TCGA-44-5643       TCGA-44-5645       TCGA-44-6144 
"OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE"   "OR10G8 MUTATED" 
      TCGA-44-6145       TCGA-44-6146       TCGA-44-6147       TCGA-44-6148 
"OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" 
      TCGA-44-6774       TCGA-44-6775       TCGA-44-6776       TCGA-44-6777 
"OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" 
      TCGA-44-6778       TCGA-44-6779       TCGA-49-4486       TCGA-49-4487 
"OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" 
      TCGA-49-4488       TCGA-49-4490       TCGA-49-4494       TCGA-49-4501 
"OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" 
      TCGA-49-4505       TCGA-49-4506       TCGA-49-4507       TCGA-49-4510 
"OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" 
      TCGA-49-4512       TCGA-49-4514       TCGA-49-6742       TCGA-49-6743 
"OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" 
      TCGA-49-6744       TCGA-49-6745       TCGA-50-5044       TCGA-50-5045 
"OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" 
      TCGA-50-5049       TCGA-50-5051       TCGA-50-5055       TCGA-50-5066 
"OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" 
      TCGA-50-5068       TCGA-50-5072       TCGA-50-5930       TCGA-50-5931 
"OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" 
      TCGA-50-5932       TCGA-50-5933       TCGA-50-5935       TCGA-50-5936 
"OR10G8 WILD-TYPE"   "OR10G8 MUTATED" "OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" 
      TCGA-50-5939       TCGA-50-5941       TCGA-50-5942       TCGA-50-5944 
"OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" 
      TCGA-50-5946       TCGA-50-6590       TCGA-50-6591       TCGA-50-6592 
"OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE"   "OR10G8 MUTATED" 
      TCGA-50-6593       TCGA-50-6594       TCGA-50-6595       TCGA-50-6597 
"OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" 
      TCGA-55-1592       TCGA-55-1594       TCGA-55-1595       TCGA-55-1596 
"OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" 
      TCGA-55-5899       TCGA-55-6543       TCGA-55-6642       TCGA-55-6712 
"OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" 
      TCGA-64-1676       TCGA-64-1677       TCGA-64-1678       TCGA-64-1680 
  "OR10G8 MUTATED" "OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" 
      TCGA-64-5774       TCGA-64-5775       TCGA-64-5778       TCGA-64-5779 
"OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" 
      TCGA-64-5781       TCGA-64-5815       TCGA-67-3770       TCGA-67-3771 
"OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" 
      TCGA-67-3772       TCGA-67-3773       TCGA-67-3774       TCGA-67-6215 
"OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" 
      TCGA-67-6216       TCGA-67-6217       TCGA-71-6725       TCGA-73-4658 
"OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" 
      TCGA-73-4659       TCGA-73-4662       TCGA-73-4666       TCGA-73-4668 
"OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" 
      TCGA-73-4670       TCGA-73-4675       TCGA-73-4676       TCGA-73-4677 
"OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" 
      TCGA-91-6828       TCGA-91-6829       TCGA-91-6831       TCGA-91-6835 
"OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" 
      TCGA-91-6836 
"OR10G8 WILD-TYPE" 
      TCGA-05-4249       TCGA-05-4250       TCGA-05-4382       TCGA-05-4384 
"OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE"   "OR10G8 MUTATED" "OR10G8 WILD-TYPE" 
      TCGA-05-4390       TCGA-05-4396       TCGA-05-4397       TCGA-05-4398 
"OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" 
      TCGA-05-4402       TCGA-05-4405       TCGA-05-4415       TCGA-05-4417 
"OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" 
      TCGA-05-4418       TCGA-05-4420       TCGA-05-4424       TCGA-05-4426 
"OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" 
      TCGA-05-4427       TCGA-05-4430       TCGA-05-4432       TCGA-05-4433 
"OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" 
      TCGA-05-4434       TCGA-05-5420       TCGA-05-5423       TCGA-05-5425 
"OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" 
      TCGA-05-5429       TCGA-05-5715       TCGA-35-3615       TCGA-35-4122 
"OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE"   "OR10G8 MUTATED" 
      TCGA-35-4123       TCGA-35-5375       TCGA-38-4625       TCGA-38-4626 
"OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" 
      TCGA-38-4627       TCGA-38-4628       TCGA-38-4629       TCGA-38-4630 
"OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" 
      TCGA-38-4631       TCGA-38-4632       TCGA-38-6178       TCGA-44-2655 
"OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" 
      TCGA-44-2656       TCGA-44-2657       TCGA-44-2659       TCGA-44-2661 
"OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" 
      TCGA-44-2662       TCGA-44-2665       TCGA-44-2666       TCGA-44-2668 
"OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" 
      TCGA-44-3396       TCGA-44-3398       TCGA-44-3918       TCGA-44-3919 
"OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" 
      TCGA-44-4112       TCGA-44-5643       TCGA-44-5645       TCGA-44-6144 
"OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE"   "OR10G8 MUTATED" 
      TCGA-44-6145       TCGA-44-6146       TCGA-44-6147       TCGA-44-6148 
"OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" 
      TCGA-44-6774       TCGA-44-6775       TCGA-44-6776       TCGA-44-6777 
"OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" 
      TCGA-44-6778       TCGA-44-6779       TCGA-49-4486       TCGA-49-4487 
"OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" 
      TCGA-49-4488       TCGA-49-4490       TCGA-49-4494       TCGA-49-4501 
"OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" 
      TCGA-49-4505       TCGA-49-4506       TCGA-49-4507       TCGA-49-4510 
"OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" 
      TCGA-49-4512       TCGA-49-4514       TCGA-49-6742       TCGA-49-6743 
"OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" 
      TCGA-49-6744       TCGA-49-6745       TCGA-50-5044       TCGA-50-5045 
"OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" 
      TCGA-50-5049       TCGA-50-5051       TCGA-50-5055       TCGA-50-5066 
"OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" 
      TCGA-50-5068       TCGA-50-5072       TCGA-50-5930       TCGA-50-5931 
"OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" 
      TCGA-50-5932       TCGA-50-5933       TCGA-50-5935       TCGA-50-5936 
"OR10G8 WILD-TYPE"   "OR10G8 MUTATED" "OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" 
      TCGA-50-5939       TCGA-50-5941       TCGA-50-5942       TCGA-50-5944 
"OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" 
      TCGA-50-5946       TCGA-50-6590       TCGA-50-6591       TCGA-50-6592 
"OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE"   "OR10G8 MUTATED" 
      TCGA-50-6593       TCGA-50-6594       TCGA-50-6595       TCGA-50-6597 
"OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" 
      TCGA-55-1592       TCGA-55-1594       TCGA-55-1595       TCGA-55-1596 
"OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" 
      TCGA-55-5899       TCGA-55-6543       TCGA-55-6642       TCGA-55-6712 
"OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" 
      TCGA-64-1676       TCGA-64-1677       TCGA-64-1678       TCGA-64-1680 
  "OR10G8 MUTATED" "OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" 
      TCGA-64-5774       TCGA-64-5775       TCGA-64-5778       TCGA-64-5779 
"OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" 
      TCGA-64-5781       TCGA-64-5815       TCGA-67-3770       TCGA-67-3771 
"OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" 
      TCGA-67-3772       TCGA-67-3773       TCGA-67-3774       TCGA-67-6215 
"OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" 
      TCGA-67-6216       TCGA-67-6217       TCGA-71-6725       TCGA-73-4658 
"OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" 
      TCGA-73-4659       TCGA-73-4662       TCGA-73-4666       TCGA-73-4668 
"OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" 
      TCGA-73-4670       TCGA-73-4675       TCGA-73-4676       TCGA-73-4677 
"OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" 
      TCGA-91-6828       TCGA-91-6829       TCGA-91-6831       TCGA-91-6835 
"OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" 
      TCGA-91-6836 
"OR10G8 WILD-TYPE" 
      TCGA-05-4249       TCGA-05-4250       TCGA-05-4382       TCGA-05-4384 
"OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE"   "OR10G8 MUTATED" "OR10G8 WILD-TYPE" 
      TCGA-05-4390       TCGA-05-4396       TCGA-05-4397       TCGA-05-4398 
"OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" 
      TCGA-05-4402       TCGA-05-4405       TCGA-05-4415       TCGA-05-4417 
"OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" 
      TCGA-05-4418       TCGA-05-4420       TCGA-05-4424       TCGA-05-4426 
"OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" 
      TCGA-05-4427       TCGA-05-4430       TCGA-05-4432       TCGA-05-4433 
"OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" 
      TCGA-05-4434       TCGA-05-5420       TCGA-05-5423       TCGA-05-5425 
"OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" 
      TCGA-05-5429       TCGA-05-5715       TCGA-35-3615       TCGA-35-4122 
"OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE"   "OR10G8 MUTATED" 
      TCGA-35-4123       TCGA-35-5375       TCGA-38-4625       TCGA-38-4626 
"OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" 
      TCGA-38-4627       TCGA-38-4628       TCGA-38-4629       TCGA-38-4630 
"OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" 
      TCGA-38-4631       TCGA-38-4632       TCGA-38-6178       TCGA-44-2655 
"OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" 
      TCGA-44-2656       TCGA-44-2657       TCGA-44-2659       TCGA-44-2661 
"OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" 
      TCGA-44-2662       TCGA-44-2665       TCGA-44-2666       TCGA-44-2668 
"OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" 
      TCGA-44-3396       TCGA-44-3398       TCGA-44-3918       TCGA-44-3919 
"OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" 
      TCGA-44-4112       TCGA-44-5643       TCGA-44-5645       TCGA-44-6144 
"OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE"   "OR10G8 MUTATED" 
      TCGA-44-6145       TCGA-44-6146       TCGA-44-6147       TCGA-44-6148 
"OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" 
      TCGA-44-6774       TCGA-44-6775       TCGA-44-6776       TCGA-44-6777 
"OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" 
      TCGA-44-6778       TCGA-44-6779       TCGA-49-4486       TCGA-49-4487 
"OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" 
      TCGA-49-4488       TCGA-49-4490       TCGA-49-4494       TCGA-49-4501 
"OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" 
      TCGA-49-4505       TCGA-49-4506       TCGA-49-4507       TCGA-49-4510 
"OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" 
      TCGA-49-4512       TCGA-49-4514       TCGA-49-6742       TCGA-49-6743 
"OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" 
      TCGA-49-6744       TCGA-49-6745       TCGA-50-5044       TCGA-50-5045 
"OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" 
      TCGA-50-5049       TCGA-50-5051       TCGA-50-5055       TCGA-50-5066 
"OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" 
      TCGA-50-5068       TCGA-50-5072       TCGA-50-5930       TCGA-50-5931 
"OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" 
      TCGA-50-5932       TCGA-50-5933       TCGA-50-5935       TCGA-50-5936 
"OR10G8 WILD-TYPE"   "OR10G8 MUTATED" "OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" 
      TCGA-50-5939       TCGA-50-5941       TCGA-50-5942       TCGA-50-5944 
"OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" 
      TCGA-50-5946       TCGA-50-6590       TCGA-50-6591       TCGA-50-6592 
"OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE"   "OR10G8 MUTATED" 
      TCGA-50-6593       TCGA-50-6594       TCGA-50-6595       TCGA-50-6597 
"OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" 
      TCGA-55-1592       TCGA-55-1594       TCGA-55-1595       TCGA-55-1596 
"OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" 
      TCGA-55-5899       TCGA-55-6543       TCGA-55-6642       TCGA-55-6712 
"OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" 
      TCGA-64-1676       TCGA-64-1677       TCGA-64-1678       TCGA-64-1680 
  "OR10G8 MUTATED" "OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" 
      TCGA-64-5774       TCGA-64-5775       TCGA-64-5778       TCGA-64-5779 
"OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" 
      TCGA-64-5781       TCGA-64-5815       TCGA-67-3770       TCGA-67-3771 
"OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" 
      TCGA-67-3772       TCGA-67-3773       TCGA-67-3774       TCGA-67-6215 
"OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" 
      TCGA-67-6216       TCGA-67-6217       TCGA-71-6725       TCGA-73-4658 
"OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" 
      TCGA-73-4659       TCGA-73-4662       TCGA-73-4666       TCGA-73-4668 
"OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" 
      TCGA-73-4670       TCGA-73-4675       TCGA-73-4676       TCGA-73-4677 
"OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" 
      TCGA-91-6828       TCGA-91-6829       TCGA-91-6831       TCGA-91-6835 
"OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" 
      TCGA-91-6836 
"OR10G8 WILD-TYPE" 
[1] "hr=" "2.1"
D108V2, continuous
D108V3, binary
[1] "tbl2"
                  cls
clus               [,1] [,2]
  OR10G8 MUTATED      2    6
  OR10G8 WILD-TYPE   91   73
        clus
vv       OR10G8 MUTATED OR10G8 WILD-TYPE
  FEMALE              2               91
  MALE                6               73
D108V4, continuous
[1] "Remove cluster labels:" "OR10G8 MUTATED"        
clus
  OR10G8 MUTATED OR10G8 WILD-TYPE 
               1               11 
      TCGA-35-4123       TCGA-35-5375       TCGA-64-1677       TCGA-64-5778 
"OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" 
      TCGA-71-6725       TCGA-73-4659       TCGA-73-4662       TCGA-73-4666 
"OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" 
      TCGA-73-4668       TCGA-73-4676       TCGA-75-5122 
"OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" 
D108V5, multiclass
D108V6, multiclass
    clus
vv   OR10G8 MUTATED OR10G8 WILD-TYPE
  T1              3               38
  T2              3              105
  T3              1               13
  T4              1                7
D108V7, multiclass
       clus
vv      OR10G8 MUTATED OR10G8 WILD-TYPE
  N0                 6               89
  N1                 0               37
  N2+N3              2               33
D108V8, multiclass
    clus
vv   OR10G8 MUTATED OR10G8 WILD-TYPE
  M0              8              129
  M1              0                9
  MX              0               22
D108V9, multiclass
     clus
vv    OR10G8 MUTATED OR10G8 WILD-TYPE
  I                6               82
  II               0               33
  III              2               37
  IV               0                9
D108V10, binary
[1] "tbl2"
                  cls
clus               [,1] [,2]
  OR10G8 MUTATED      1    7
  OR10G8 WILD-TYPE   15  149
     clus
vv    OR10G8 MUTATED OR10G8 WILD-TYPE
  NO               1               15
  YES              7              149
D108V11, continuous
D108V12, continuous
D108V13, multiclass
                                             clus
vv                                            OR10G8 MUTATED OR10G8 WILD-TYPE
  CURRENT REFORMED SMOKER FOR < OR = 15 YEARS              5               57
  CURRENT REFORMED SMOKER FOR > 15 YEARS                   0               46
  CURRENT SMOKER                                           2               26
  LIFELONG NON-SMOKER                                      0               24
D108V14, continuous

Clustering(109) Variable = ADAMTS18 MUTATION ANALYSIS
D109V1, survival
                    sevent
clus2                 0  1
  ADAMTS18 MUTATED   10  4
  ADAMTS18 WILD-TYPE 89 46
  ADAMTS18 MUTATED ADAMTS18 WILD-TYPE 
                14                135 
  ADAMTS18 MUTATED ADAMTS18 WILD-TYPE 
                 4                 46 
$`ADAMTS18 MUTATED`
TCGA-05-4382 TCGA-05-4390 TCGA-05-4396 TCGA-05-4427 TCGA-05-4430 TCGA-35-4123 
       19.92        37.02         9.96        26.01        25.02         5.95 
TCGA-38-4632 TCGA-44-6145 TCGA-49-4512 TCGA-49-4514 TCGA-49-6742 TCGA-50-5049 
       44.61         3.35        29.75        43.20        15.02        48.82 
TCGA-55-6642 TCGA-91-6829 
       32.61        41.33 

$`ADAMTS18 WILD-TYPE`
TCGA-05-4249 TCGA-05-4250 TCGA-05-4384 TCGA-05-4397 TCGA-05-4398 TCGA-05-4402 
       38.07         3.98        14.01        24.03        47.05         8.02 
TCGA-05-4405 TCGA-05-4415 TCGA-05-4417 TCGA-05-4418 TCGA-05-4420 TCGA-05-4424 
       20.05         2.96        14.93         8.98        29.95        30.02 
TCGA-05-4426 TCGA-05-4432 TCGA-05-4433 TCGA-05-4434 TCGA-05-5420 TCGA-05-5423 
       26.01        25.02        24.00        15.02         1.02         4.96 
TCGA-05-5425 TCGA-05-5429 TCGA-05-5715 TCGA-35-3615 TCGA-35-4122 TCGA-35-5375 
        2.96         0.99         2.04         0.46         7.36         8.68 
TCGA-38-4625 TCGA-38-4626 TCGA-38-4627 TCGA-38-4628 TCGA-38-4629 TCGA-38-4630 
       47.61        85.32        37.71        49.02        28.37        35.28 
TCGA-38-4631 TCGA-38-6178 TCGA-44-2655 TCGA-44-2656 TCGA-44-2657 TCGA-44-2659 
       11.64         5.19        18.87        19.10        13.15        17.39 
TCGA-44-2661 TCGA-44-2662 TCGA-44-2665 TCGA-44-2666 TCGA-44-2668 TCGA-44-3396 
        3.39        15.78        13.15         3.19         8.09        10.22 
TCGA-44-3398 TCGA-44-3918 TCGA-44-3919 TCGA-44-4112 TCGA-44-5643 TCGA-44-5645 
        8.32         6.44         6.21         4.60         3.48         6.84 
TCGA-44-6144 TCGA-44-6146 TCGA-44-6147 TCGA-44-6148 TCGA-44-6774 TCGA-44-6775 
        0.30         9.93         7.76         3.12         5.42         2.70 
TCGA-44-6776 TCGA-44-6777 TCGA-44-6778 TCGA-44-6779 TCGA-49-4486 TCGA-49-4487 
       63.72        32.45        36.49        16.41        76.21        28.11 
TCGA-49-4488 TCGA-49-4490 TCGA-49-4494 TCGA-49-4501 TCGA-49-4505 TCGA-49-4506 
       28.57        12.66        35.54        46.72        14.07        32.84 
TCGA-49-4507 TCGA-49-4510 TCGA-49-6743 TCGA-49-6744 TCGA-49-6745 TCGA-50-5044 
        8.81        29.46        12.13        12.99         4.93        20.48 
TCGA-50-5045 TCGA-50-5051 TCGA-50-5055 TCGA-50-5066 TCGA-50-5068 TCGA-50-5072 
       71.47        14.96        25.81         9.76        49.28         8.05 
TCGA-50-5930 TCGA-50-5931 TCGA-50-5932 TCGA-50-5933 TCGA-50-5935 TCGA-50-5936 
        9.27         8.78        35.87        77.88        21.47         8.45 
TCGA-50-5939 TCGA-50-5941 TCGA-50-5942 TCGA-50-5944 TCGA-50-5946 TCGA-50-6590 
       15.12         9.37         4.44        12.26        11.47        42.31 
TCGA-50-6591 TCGA-50-6592 TCGA-50-6593 TCGA-50-6594 TCGA-50-6595 TCGA-50-6597 
        3.88        25.51        11.05        12.16         6.21        33.37 
TCGA-55-1592 TCGA-55-1594 TCGA-55-1595 TCGA-55-1596 TCGA-55-5899 TCGA-55-6543 
       23.05        38.73        48.62        45.17         2.86         0.07 
TCGA-55-6712 TCGA-64-1676 TCGA-64-1677 TCGA-64-1678 TCGA-64-1680 TCGA-64-5774 
        0.79        56.81        20.65        39.09        37.02        83.84 
TCGA-64-5775 TCGA-64-5778 TCGA-64-5779 TCGA-64-5781 TCGA-64-5815 TCGA-67-3770 
        0.10        30.44        16.67        39.52         7.33         0.99 
TCGA-67-3771 TCGA-67-3772 TCGA-67-3773 TCGA-67-3774 TCGA-67-6215 TCGA-67-6216 
        1.97         0.59         2.04         0.59         0.89         0.69 
TCGA-67-6217 TCGA-71-6725 TCGA-73-4658 TCGA-73-4659 TCGA-73-4662 TCGA-73-4666 
       13.87         2.01        52.57        23.38        29.95        20.28 
TCGA-73-4668 TCGA-73-4670 TCGA-73-4675 TCGA-73-4676 TCGA-73-4677 TCGA-91-6828 
       15.35         0.46         1.32         4.01         1.25         1.22 
TCGA-91-6831 TCGA-91-6835 TCGA-91-6836 
        1.28         1.15         0.36 

  ADAMTS18 MUTATED ADAMTS18 WILD-TYPE 
              3.35               0.07 
  ADAMTS18 MUTATED ADAMTS18 WILD-TYPE 
             48.82              85.32 
  ADAMTS18 MUTATED ADAMTS18 WILD-TYPE 
             27.88              12.66 
[1] "3.4 - 48.8 (27.9)" "0.1 - 85.3 (12.7)"
        TCGA-05-4249         TCGA-05-4250         TCGA-05-4382 
"ADAMTS18 WILD-TYPE" "ADAMTS18 WILD-TYPE"   "ADAMTS18 MUTATED" 
        TCGA-05-4384         TCGA-05-4390         TCGA-05-4396 
"ADAMTS18 WILD-TYPE"   "ADAMTS18 MUTATED"   "ADAMTS18 MUTATED" 
        TCGA-05-4397         TCGA-05-4398         TCGA-05-4402 
"ADAMTS18 WILD-TYPE" "ADAMTS18 WILD-TYPE" "ADAMTS18 WILD-TYPE" 
        TCGA-05-4405         TCGA-05-4415         TCGA-05-4417 
"ADAMTS18 WILD-TYPE" "ADAMTS18 WILD-TYPE" "ADAMTS18 WILD-TYPE" 
        TCGA-05-4418         TCGA-05-4420         TCGA-05-4424 
"ADAMTS18 WILD-TYPE" "ADAMTS18 WILD-TYPE" "ADAMTS18 WILD-TYPE" 
        TCGA-05-4426         TCGA-05-4427         TCGA-05-4430 
"ADAMTS18 WILD-TYPE"   "ADAMTS18 MUTATED"   "ADAMTS18 MUTATED" 
        TCGA-05-4432         TCGA-05-4433         TCGA-05-4434 
"ADAMTS18 WILD-TYPE" "ADAMTS18 WILD-TYPE" "ADAMTS18 WILD-TYPE" 
        TCGA-05-5420         TCGA-05-5423         TCGA-05-5425 
"ADAMTS18 WILD-TYPE" "ADAMTS18 WILD-TYPE" "ADAMTS18 WILD-TYPE" 
        TCGA-05-5429         TCGA-05-5715         TCGA-35-3615 
"ADAMTS18 WILD-TYPE" "ADAMTS18 WILD-TYPE" "ADAMTS18 WILD-TYPE" 
        TCGA-35-4122         TCGA-35-4123         TCGA-35-5375 
"ADAMTS18 WILD-TYPE"   "ADAMTS18 MUTATED" "ADAMTS18 WILD-TYPE" 
        TCGA-38-4625         TCGA-38-4626         TCGA-38-4627 
"ADAMTS18 WILD-TYPE" "ADAMTS18 WILD-TYPE" "ADAMTS18 WILD-TYPE" 
        TCGA-38-4628         TCGA-38-4629         TCGA-38-4630 
"ADAMTS18 WILD-TYPE" "ADAMTS18 WILD-TYPE" "ADAMTS18 WILD-TYPE" 
        TCGA-38-4631         TCGA-38-4632         TCGA-38-6178 
"ADAMTS18 WILD-TYPE"   "ADAMTS18 MUTATED" "ADAMTS18 WILD-TYPE" 
        TCGA-44-2655         TCGA-44-2656         TCGA-44-2657 
"ADAMTS18 WILD-TYPE" "ADAMTS18 WILD-TYPE" "ADAMTS18 WILD-TYPE" 
        TCGA-44-2659         TCGA-44-2661         TCGA-44-2662 
"ADAMTS18 WILD-TYPE" "ADAMTS18 WILD-TYPE" "ADAMTS18 WILD-TYPE" 
        TCGA-44-2665         TCGA-44-2666         TCGA-44-2668 
"ADAMTS18 WILD-TYPE" "ADAMTS18 WILD-TYPE" "ADAMTS18 WILD-TYPE" 
        TCGA-44-3396         TCGA-44-3398         TCGA-44-3918 
"ADAMTS18 WILD-TYPE" "ADAMTS18 WILD-TYPE" "ADAMTS18 WILD-TYPE" 
        TCGA-44-3919         TCGA-44-4112         TCGA-44-5643 
"ADAMTS18 WILD-TYPE" "ADAMTS18 WILD-TYPE" "ADAMTS18 WILD-TYPE" 
        TCGA-44-5645         TCGA-44-6144         TCGA-44-6145 
"ADAMTS18 WILD-TYPE" "ADAMTS18 WILD-TYPE"   "ADAMTS18 MUTATED" 
        TCGA-44-6146         TCGA-44-6147         TCGA-44-6148 
"ADAMTS18 WILD-TYPE" "ADAMTS18 WILD-TYPE" "ADAMTS18 WILD-TYPE" 
        TCGA-44-6774         TCGA-44-6775         TCGA-44-6776 
"ADAMTS18 WILD-TYPE" "ADAMTS18 WILD-TYPE" "ADAMTS18 WILD-TYPE" 
        TCGA-44-6777         TCGA-44-6778         TCGA-44-6779 
"ADAMTS18 WILD-TYPE" "ADAMTS18 WILD-TYPE" "ADAMTS18 WILD-TYPE" 
        TCGA-49-4486         TCGA-49-4487         TCGA-49-4488 
"ADAMTS18 WILD-TYPE" "ADAMTS18 WILD-TYPE" "ADAMTS18 WILD-TYPE" 
        TCGA-49-4490         TCGA-49-4494         TCGA-49-4501 
"ADAMTS18 WILD-TYPE" "ADAMTS18 WILD-TYPE" "ADAMTS18 WILD-TYPE" 
        TCGA-49-4505         TCGA-49-4506         TCGA-49-4507 
"ADAMTS18 WILD-TYPE" "ADAMTS18 WILD-TYPE" "ADAMTS18 WILD-TYPE" 
        TCGA-49-4510         TCGA-49-4512         TCGA-49-4514 
"ADAMTS18 WILD-TYPE"   "ADAMTS18 MUTATED"   "ADAMTS18 MUTATED" 
        TCGA-49-6742         TCGA-49-6743         TCGA-49-6744 
  "ADAMTS18 MUTATED" "ADAMTS18 WILD-TYPE" "ADAMTS18 WILD-TYPE" 
        TCGA-49-6745         TCGA-50-5044         TCGA-50-5045 
"ADAMTS18 WILD-TYPE" "ADAMTS18 WILD-TYPE" "ADAMTS18 WILD-TYPE" 
        TCGA-50-5049         TCGA-50-5051         TCGA-50-5055 
  "ADAMTS18 MUTATED" "ADAMTS18 WILD-TYPE" "ADAMTS18 WILD-TYPE" 
        TCGA-50-5066         TCGA-50-5068         TCGA-50-5072 
"ADAMTS18 WILD-TYPE" "ADAMTS18 WILD-TYPE" "ADAMTS18 WILD-TYPE" 
        TCGA-50-5930         TCGA-50-5931         TCGA-50-5932 
"ADAMTS18 WILD-TYPE" "ADAMTS18 WILD-TYPE" "ADAMTS18 WILD-TYPE" 
        TCGA-50-5933         TCGA-50-5935         TCGA-50-5936 
"ADAMTS18 WILD-TYPE" "ADAMTS18 WILD-TYPE" "ADAMTS18 WILD-TYPE" 
        TCGA-50-5939         TCGA-50-5941         TCGA-50-5942 
"ADAMTS18 WILD-TYPE" "ADAMTS18 WILD-TYPE" "ADAMTS18 WILD-TYPE" 
        TCGA-50-5944         TCGA-50-5946         TCGA-50-6590 
"ADAMTS18 WILD-TYPE" "ADAMTS18 WILD-TYPE" "ADAMTS18 WILD-TYPE" 
        TCGA-50-6591         TCGA-50-6592         TCGA-50-6593 
"ADAMTS18 WILD-TYPE" "ADAMTS18 WILD-TYPE" "ADAMTS18 WILD-TYPE" 
        TCGA-50-6594         TCGA-50-6595         TCGA-50-6597 
"ADAMTS18 WILD-TYPE" "ADAMTS18 WILD-TYPE" "ADAMTS18 WILD-TYPE" 
        TCGA-55-1592         TCGA-55-1594         TCGA-55-1595 
"ADAMTS18 WILD-TYPE" "ADAMTS18 WILD-TYPE" "ADAMTS18 WILD-TYPE" 
        TCGA-55-1596         TCGA-55-5899         TCGA-55-6543 
"ADAMTS18 WILD-TYPE" "ADAMTS18 WILD-TYPE" "ADAMTS18 WILD-TYPE" 
        TCGA-55-6642         TCGA-55-6712         TCGA-64-1676 
  "ADAMTS18 MUTATED" "ADAMTS18 WILD-TYPE" "ADAMTS18 WILD-TYPE" 
        TCGA-64-1677         TCGA-64-1678         TCGA-64-1680 
"ADAMTS18 WILD-TYPE" "ADAMTS18 WILD-TYPE" "ADAMTS18 WILD-TYPE" 
        TCGA-64-5774         TCGA-64-5775         TCGA-64-5778 
"ADAMTS18 WILD-TYPE" "ADAMTS18 WILD-TYPE" "ADAMTS18 WILD-TYPE" 
        TCGA-64-5779         TCGA-64-5781         TCGA-64-5815 
"ADAMTS18 WILD-TYPE" "ADAMTS18 WILD-TYPE" "ADAMTS18 WILD-TYPE" 
        TCGA-67-3770         TCGA-67-3771         TCGA-67-3772 
"ADAMTS18 WILD-TYPE" "ADAMTS18 WILD-TYPE" "ADAMTS18 WILD-TYPE" 
        TCGA-67-3773         TCGA-67-3774         TCGA-67-6215 
"ADAMTS18 WILD-TYPE" "ADAMTS18 WILD-TYPE" "ADAMTS18 WILD-TYPE" 
        TCGA-67-6216         TCGA-67-6217         TCGA-71-6725 
"ADAMTS18 WILD-TYPE" "ADAMTS18 WILD-TYPE" "ADAMTS18 WILD-TYPE" 
        TCGA-73-4658         TCGA-73-4659         TCGA-73-4662 
"ADAMTS18 WILD-TYPE" "ADAMTS18 WILD-TYPE" "ADAMTS18 WILD-TYPE" 
        TCGA-73-4666         TCGA-73-4668         TCGA-73-4670 
"ADAMTS18 WILD-TYPE" "ADAMTS18 WILD-TYPE" "ADAMTS18 WILD-TYPE" 
        TCGA-73-4675         TCGA-73-4676         TCGA-73-4677 
"ADAMTS18 WILD-TYPE" "ADAMTS18 WILD-TYPE" "ADAMTS18 WILD-TYPE" 
        TCGA-91-6828         TCGA-91-6829         TCGA-91-6831 
"ADAMTS18 WILD-TYPE"   "ADAMTS18 MUTATED" "ADAMTS18 WILD-TYPE" 
        TCGA-91-6835         TCGA-91-6836 
"ADAMTS18 WILD-TYPE" "ADAMTS18 WILD-TYPE" 
        TCGA-05-4249         TCGA-05-4250         TCGA-05-4382 
"ADAMTS18 WILD-TYPE" "ADAMTS18 WILD-TYPE"   "ADAMTS18 MUTATED" 
        TCGA-05-4384         TCGA-05-4390         TCGA-05-4396 
"ADAMTS18 WILD-TYPE"   "ADAMTS18 MUTATED"   "ADAMTS18 MUTATED" 
        TCGA-05-4397         TCGA-05-4398         TCGA-05-4402 
"ADAMTS18 WILD-TYPE" "ADAMTS18 WILD-TYPE" "ADAMTS18 WILD-TYPE" 
        TCGA-05-4405         TCGA-05-4415         TCGA-05-4417 
"ADAMTS18 WILD-TYPE" "ADAMTS18 WILD-TYPE" "ADAMTS18 WILD-TYPE" 
        TCGA-05-4418         TCGA-05-4420         TCGA-05-4424 
"ADAMTS18 WILD-TYPE" "ADAMTS18 WILD-TYPE" "ADAMTS18 WILD-TYPE" 
        TCGA-05-4426         TCGA-05-4427         TCGA-05-4430 
"ADAMTS18 WILD-TYPE"   "ADAMTS18 MUTATED"   "ADAMTS18 MUTATED" 
        TCGA-05-4432         TCGA-05-4433         TCGA-05-4434 
"ADAMTS18 WILD-TYPE" "ADAMTS18 WILD-TYPE" "ADAMTS18 WILD-TYPE" 
        TCGA-05-5420         TCGA-05-5423         TCGA-05-5425 
"ADAMTS18 WILD-TYPE" "ADAMTS18 WILD-TYPE" "ADAMTS18 WILD-TYPE" 
        TCGA-05-5429         TCGA-05-5715         TCGA-35-3615 
"ADAMTS18 WILD-TYPE" "ADAMTS18 WILD-TYPE" "ADAMTS18 WILD-TYPE" 
        TCGA-35-4122         TCGA-35-4123         TCGA-35-5375 
"ADAMTS18 WILD-TYPE"   "ADAMTS18 MUTATED" "ADAMTS18 WILD-TYPE" 
        TCGA-38-4625         TCGA-38-4626         TCGA-38-4627 
"ADAMTS18 WILD-TYPE" "ADAMTS18 WILD-TYPE" "ADAMTS18 WILD-TYPE" 
        TCGA-38-4628         TCGA-38-4629         TCGA-38-4630 
"ADAMTS18 WILD-TYPE" "ADAMTS18 WILD-TYPE" "ADAMTS18 WILD-TYPE" 
        TCGA-38-4631         TCGA-38-4632         TCGA-38-6178 
"ADAMTS18 WILD-TYPE"   "ADAMTS18 MUTATED" "ADAMTS18 WILD-TYPE" 
        TCGA-44-2655         TCGA-44-2656         TCGA-44-2657 
"ADAMTS18 WILD-TYPE" "ADAMTS18 WILD-TYPE" "ADAMTS18 WILD-TYPE" 
        TCGA-44-2659         TCGA-44-2661         TCGA-44-2662 
"ADAMTS18 WILD-TYPE" "ADAMTS18 WILD-TYPE" "ADAMTS18 WILD-TYPE" 
        TCGA-44-2665         TCGA-44-2666         TCGA-44-2668 
"ADAMTS18 WILD-TYPE" "ADAMTS18 WILD-TYPE" "ADAMTS18 WILD-TYPE" 
        TCGA-44-3396         TCGA-44-3398         TCGA-44-3918 
"ADAMTS18 WILD-TYPE" "ADAMTS18 WILD-TYPE" "ADAMTS18 WILD-TYPE" 
        TCGA-44-3919         TCGA-44-4112         TCGA-44-5643 
"ADAMTS18 WILD-TYPE" "ADAMTS18 WILD-TYPE" "ADAMTS18 WILD-TYPE" 
        TCGA-44-5645         TCGA-44-6144         TCGA-44-6145 
"ADAMTS18 WILD-TYPE" "ADAMTS18 WILD-TYPE"   "ADAMTS18 MUTATED" 
        TCGA-44-6146         TCGA-44-6147         TCGA-44-6148 
"ADAMTS18 WILD-TYPE" "ADAMTS18 WILD-TYPE" "ADAMTS18 WILD-TYPE" 
        TCGA-44-6774         TCGA-44-6775         TCGA-44-6776 
"ADAMTS18 WILD-TYPE" "ADAMTS18 WILD-TYPE" "ADAMTS18 WILD-TYPE" 
        TCGA-44-6777         TCGA-44-6778         TCGA-44-6779 
"ADAMTS18 WILD-TYPE" "ADAMTS18 WILD-TYPE" "ADAMTS18 WILD-TYPE" 
        TCGA-49-4486         TCGA-49-4487         TCGA-49-4488 
"ADAMTS18 WILD-TYPE" "ADAMTS18 WILD-TYPE" "ADAMTS18 WILD-TYPE" 
        TCGA-49-4490         TCGA-49-4494         TCGA-49-4501 
"ADAMTS18 WILD-TYPE" "ADAMTS18 WILD-TYPE" "ADAMTS18 WILD-TYPE" 
        TCGA-49-4505         TCGA-49-4506         TCGA-49-4507 
"ADAMTS18 WILD-TYPE" "ADAMTS18 WILD-TYPE" "ADAMTS18 WILD-TYPE" 
        TCGA-49-4510         TCGA-49-4512         TCGA-49-4514 
"ADAMTS18 WILD-TYPE"   "ADAMTS18 MUTATED"   "ADAMTS18 MUTATED" 
        TCGA-49-6742         TCGA-49-6743         TCGA-49-6744 
  "ADAMTS18 MUTATED" "ADAMTS18 WILD-TYPE" "ADAMTS18 WILD-TYPE" 
        TCGA-49-6745         TCGA-50-5044         TCGA-50-5045 
"ADAMTS18 WILD-TYPE" "ADAMTS18 WILD-TYPE" "ADAMTS18 WILD-TYPE" 
        TCGA-50-5049         TCGA-50-5051         TCGA-50-5055 
  "ADAMTS18 MUTATED" "ADAMTS18 WILD-TYPE" "ADAMTS18 WILD-TYPE" 
        TCGA-50-5066         TCGA-50-5068         TCGA-50-5072 
"ADAMTS18 WILD-TYPE" "ADAMTS18 WILD-TYPE" "ADAMTS18 WILD-TYPE" 
        TCGA-50-5930         TCGA-50-5931         TCGA-50-5932 
"ADAMTS18 WILD-TYPE" "ADAMTS18 WILD-TYPE" "ADAMTS18 WILD-TYPE" 
        TCGA-50-5933         TCGA-50-5935         TCGA-50-5936 
"ADAMTS18 WILD-TYPE" "ADAMTS18 WILD-TYPE" "ADAMTS18 WILD-TYPE" 
        TCGA-50-5939         TCGA-50-5941         TCGA-50-5942 
"ADAMTS18 WILD-TYPE" "ADAMTS18 WILD-TYPE" "ADAMTS18 WILD-TYPE" 
        TCGA-50-5944         TCGA-50-5946         TCGA-50-6590 
"ADAMTS18 WILD-TYPE" "ADAMTS18 WILD-TYPE" "ADAMTS18 WILD-TYPE" 
        TCGA-50-6591         TCGA-50-6592         TCGA-50-6593 
"ADAMTS18 WILD-TYPE" "ADAMTS18 WILD-TYPE" "ADAMTS18 WILD-TYPE" 
        TCGA-50-6594         TCGA-50-6595         TCGA-50-6597 
"ADAMTS18 WILD-TYPE" "ADAMTS18 WILD-TYPE" "ADAMTS18 WILD-TYPE" 
        TCGA-55-1592         TCGA-55-1594         TCGA-55-1595 
"ADAMTS18 WILD-TYPE" "ADAMTS18 WILD-TYPE" "ADAMTS18 WILD-TYPE" 
        TCGA-55-1596         TCGA-55-5899         TCGA-55-6543 
"ADAMTS18 WILD-TYPE" "ADAMTS18 WILD-TYPE" "ADAMTS18 WILD-TYPE" 
        TCGA-55-6642         TCGA-55-6712         TCGA-64-1676 
  "ADAMTS18 MUTATED" "ADAMTS18 WILD-TYPE" "ADAMTS18 WILD-TYPE" 
        TCGA-64-1677         TCGA-64-1678         TCGA-64-1680 
"ADAMTS18 WILD-TYPE" "ADAMTS18 WILD-TYPE" "ADAMTS18 WILD-TYPE" 
        TCGA-64-5774         TCGA-64-5775         TCGA-64-5778 
"ADAMTS18 WILD-TYPE" "ADAMTS18 WILD-TYPE" "ADAMTS18 WILD-TYPE" 
        TCGA-64-5779         TCGA-64-5781         TCGA-64-5815 
"ADAMTS18 WILD-TYPE" "ADAMTS18 WILD-TYPE" "ADAMTS18 WILD-TYPE" 
        TCGA-67-3770         TCGA-67-3771         TCGA-67-3772 
"ADAMTS18 WILD-TYPE" "ADAMTS18 WILD-TYPE" "ADAMTS18 WILD-TYPE" 
        TCGA-67-3773         TCGA-67-3774         TCGA-67-6215 
"ADAMTS18 WILD-TYPE" "ADAMTS18 WILD-TYPE" "ADAMTS18 WILD-TYPE" 
        TCGA-67-6216         TCGA-67-6217         TCGA-71-6725 
"ADAMTS18 WILD-TYPE" "ADAMTS18 WILD-TYPE" "ADAMTS18 WILD-TYPE" 
        TCGA-73-4658         TCGA-73-4659         TCGA-73-4662 
"ADAMTS18 WILD-TYPE" "ADAMTS18 WILD-TYPE" "ADAMTS18 WILD-TYPE" 
        TCGA-73-4666         TCGA-73-4668         TCGA-73-4670 
"ADAMTS18 WILD-TYPE" "ADAMTS18 WILD-TYPE" "ADAMTS18 WILD-TYPE" 
        TCGA-73-4675         TCGA-73-4676         TCGA-73-4677 
"ADAMTS18 WILD-TYPE" "ADAMTS18 WILD-TYPE" "ADAMTS18 WILD-TYPE" 
        TCGA-91-6828         TCGA-91-6829         TCGA-91-6831 
"ADAMTS18 WILD-TYPE"   "ADAMTS18 MUTATED" "ADAMTS18 WILD-TYPE" 
        TCGA-91-6835         TCGA-91-6836 
"ADAMTS18 WILD-TYPE" "ADAMTS18 WILD-TYPE" 
        TCGA-05-4249         TCGA-05-4250         TCGA-05-4382 
"ADAMTS18 WILD-TYPE" "ADAMTS18 WILD-TYPE"   "ADAMTS18 MUTATED" 
        TCGA-05-4384         TCGA-05-4390         TCGA-05-4396 
"ADAMTS18 WILD-TYPE"   "ADAMTS18 MUTATED"   "ADAMTS18 MUTATED" 
        TCGA-05-4397         TCGA-05-4398         TCGA-05-4402 
"ADAMTS18 WILD-TYPE" "ADAMTS18 WILD-TYPE" "ADAMTS18 WILD-TYPE" 
        TCGA-05-4405         TCGA-05-4415         TCGA-05-4417 
"ADAMTS18 WILD-TYPE" "ADAMTS18 WILD-TYPE" "ADAMTS18 WILD-TYPE" 
        TCGA-05-4418         TCGA-05-4420         TCGA-05-4424 
"ADAMTS18 WILD-TYPE" "ADAMTS18 WILD-TYPE" "ADAMTS18 WILD-TYPE" 
        TCGA-05-4426         TCGA-05-4427         TCGA-05-4430 
"ADAMTS18 WILD-TYPE"   "ADAMTS18 MUTATED"   "ADAMTS18 MUTATED" 
        TCGA-05-4432         TCGA-05-4433         TCGA-05-4434 
"ADAMTS18 WILD-TYPE" "ADAMTS18 WILD-TYPE" "ADAMTS18 WILD-TYPE" 
        TCGA-05-5420         TCGA-05-5423         TCGA-05-5425 
"ADAMTS18 WILD-TYPE" "ADAMTS18 WILD-TYPE" "ADAMTS18 WILD-TYPE" 
        TCGA-05-5429         TCGA-05-5715         TCGA-35-3615 
"ADAMTS18 WILD-TYPE" "ADAMTS18 WILD-TYPE" "ADAMTS18 WILD-TYPE" 
        TCGA-35-4122         TCGA-35-4123         TCGA-35-5375 
"ADAMTS18 WILD-TYPE"   "ADAMTS18 MUTATED" "ADAMTS18 WILD-TYPE" 
        TCGA-38-4625         TCGA-38-4626         TCGA-38-4627 
"ADAMTS18 WILD-TYPE" "ADAMTS18 WILD-TYPE" "ADAMTS18 WILD-TYPE" 
        TCGA-38-4628         TCGA-38-4629         TCGA-38-4630 
"ADAMTS18 WILD-TYPE" "ADAMTS18 WILD-TYPE" "ADAMTS18 WILD-TYPE" 
        TCGA-38-4631         TCGA-38-4632         TCGA-38-6178 
"ADAMTS18 WILD-TYPE"   "ADAMTS18 MUTATED" "ADAMTS18 WILD-TYPE" 
        TCGA-44-2655         TCGA-44-2656         TCGA-44-2657 
"ADAMTS18 WILD-TYPE" "ADAMTS18 WILD-TYPE" "ADAMTS18 WILD-TYPE" 
        TCGA-44-2659         TCGA-44-2661         TCGA-44-2662 
"ADAMTS18 WILD-TYPE" "ADAMTS18 WILD-TYPE" "ADAMTS18 WILD-TYPE" 
        TCGA-44-2665         TCGA-44-2666         TCGA-44-2668 
"ADAMTS18 WILD-TYPE" "ADAMTS18 WILD-TYPE" "ADAMTS18 WILD-TYPE" 
        TCGA-44-3396         TCGA-44-3398         TCGA-44-3918 
"ADAMTS18 WILD-TYPE" "ADAMTS18 WILD-TYPE" "ADAMTS18 WILD-TYPE" 
        TCGA-44-3919         TCGA-44-4112         TCGA-44-5643 
"ADAMTS18 WILD-TYPE" "ADAMTS18 WILD-TYPE" "ADAMTS18 WILD-TYPE" 
        TCGA-44-5645         TCGA-44-6144         TCGA-44-6145 
"ADAMTS18 WILD-TYPE" "ADAMTS18 WILD-TYPE"   "ADAMTS18 MUTATED" 
        TCGA-44-6146         TCGA-44-6147         TCGA-44-6148 
"ADAMTS18 WILD-TYPE" "ADAMTS18 WILD-TYPE" "ADAMTS18 WILD-TYPE" 
        TCGA-44-6774         TCGA-44-6775         TCGA-44-6776 
"ADAMTS18 WILD-TYPE" "ADAMTS18 WILD-TYPE" "ADAMTS18 WILD-TYPE" 
        TCGA-44-6777         TCGA-44-6778         TCGA-44-6779 
"ADAMTS18 WILD-TYPE" "ADAMTS18 WILD-TYPE" "ADAMTS18 WILD-TYPE" 
        TCGA-49-4486         TCGA-49-4487         TCGA-49-4488 
"ADAMTS18 WILD-TYPE" "ADAMTS18 WILD-TYPE" "ADAMTS18 WILD-TYPE" 
        TCGA-49-4490         TCGA-49-4494         TCGA-49-4501 
"ADAMTS18 WILD-TYPE" "ADAMTS18 WILD-TYPE" "ADAMTS18 WILD-TYPE" 
        TCGA-49-4505         TCGA-49-4506         TCGA-49-4507 
"ADAMTS18 WILD-TYPE" "ADAMTS18 WILD-TYPE" "ADAMTS18 WILD-TYPE" 
        TCGA-49-4510         TCGA-49-4512         TCGA-49-4514 
"ADAMTS18 WILD-TYPE"   "ADAMTS18 MUTATED"   "ADAMTS18 MUTATED" 
        TCGA-49-6742         TCGA-49-6743         TCGA-49-6744 
  "ADAMTS18 MUTATED" "ADAMTS18 WILD-TYPE" "ADAMTS18 WILD-TYPE" 
        TCGA-49-6745         TCGA-50-5044         TCGA-50-5045 
"ADAMTS18 WILD-TYPE" "ADAMTS18 WILD-TYPE" "ADAMTS18 WILD-TYPE" 
        TCGA-50-5049         TCGA-50-5051         TCGA-50-5055 
  "ADAMTS18 MUTATED" "ADAMTS18 WILD-TYPE" "ADAMTS18 WILD-TYPE" 
        TCGA-50-5066         TCGA-50-5068         TCGA-50-5072 
"ADAMTS18 WILD-TYPE" "ADAMTS18 WILD-TYPE" "ADAMTS18 WILD-TYPE" 
        TCGA-50-5930         TCGA-50-5931         TCGA-50-5932 
"ADAMTS18 WILD-TYPE" "ADAMTS18 WILD-TYPE" "ADAMTS18 WILD-TYPE" 
        TCGA-50-5933         TCGA-50-5935         TCGA-50-5936 
"ADAMTS18 WILD-TYPE" "ADAMTS18 WILD-TYPE" "ADAMTS18 WILD-TYPE" 
        TCGA-50-5939         TCGA-50-5941         TCGA-50-5942 
"ADAMTS18 WILD-TYPE" "ADAMTS18 WILD-TYPE" "ADAMTS18 WILD-TYPE" 
        TCGA-50-5944         TCGA-50-5946         TCGA-50-6590 
"ADAMTS18 WILD-TYPE" "ADAMTS18 WILD-TYPE" "ADAMTS18 WILD-TYPE" 
        TCGA-50-6591         TCGA-50-6592         TCGA-50-6593 
"ADAMTS18 WILD-TYPE" "ADAMTS18 WILD-TYPE" "ADAMTS18 WILD-TYPE" 
        TCGA-50-6594         TCGA-50-6595         TCGA-50-6597 
"ADAMTS18 WILD-TYPE" "ADAMTS18 WILD-TYPE" "ADAMTS18 WILD-TYPE" 
        TCGA-55-1592         TCGA-55-1594         TCGA-55-1595 
"ADAMTS18 WILD-TYPE" "ADAMTS18 WILD-TYPE" "ADAMTS18 WILD-TYPE" 
        TCGA-55-1596         TCGA-55-5899         TCGA-55-6543 
"ADAMTS18 WILD-TYPE" "ADAMTS18 WILD-TYPE" "ADAMTS18 WILD-TYPE" 
        TCGA-55-6642         TCGA-55-6712         TCGA-64-1676 
  "ADAMTS18 MUTATED" "ADAMTS18 WILD-TYPE" "ADAMTS18 WILD-TYPE" 
        TCGA-64-1677         TCGA-64-1678         TCGA-64-1680 
"ADAMTS18 WILD-TYPE" "ADAMTS18 WILD-TYPE" "ADAMTS18 WILD-TYPE" 
        TCGA-64-5774         TCGA-64-5775         TCGA-64-5778 
"ADAMTS18 WILD-TYPE" "ADAMTS18 WILD-TYPE" "ADAMTS18 WILD-TYPE" 
        TCGA-64-5779         TCGA-64-5781         TCGA-64-5815 
"ADAMTS18 WILD-TYPE" "ADAMTS18 WILD-TYPE" "ADAMTS18 WILD-TYPE" 
        TCGA-67-3770         TCGA-67-3771         TCGA-67-3772 
"ADAMTS18 WILD-TYPE" "ADAMTS18 WILD-TYPE" "ADAMTS18 WILD-TYPE" 
        TCGA-67-3773         TCGA-67-3774         TCGA-67-6215 
"ADAMTS18 WILD-TYPE" "ADAMTS18 WILD-TYPE" "ADAMTS18 WILD-TYPE" 
        TCGA-67-6216         TCGA-67-6217         TCGA-71-6725 
"ADAMTS18 WILD-TYPE" "ADAMTS18 WILD-TYPE" "ADAMTS18 WILD-TYPE" 
        TCGA-73-4658         TCGA-73-4659         TCGA-73-4662 
"ADAMTS18 WILD-TYPE" "ADAMTS18 WILD-TYPE" "ADAMTS18 WILD-TYPE" 
        TCGA-73-4666         TCGA-73-4668         TCGA-73-4670 
"ADAMTS18 WILD-TYPE" "ADAMTS18 WILD-TYPE" "ADAMTS18 WILD-TYPE" 
        TCGA-73-4675         TCGA-73-4676         TCGA-73-4677 
"ADAMTS18 WILD-TYPE" "ADAMTS18 WILD-TYPE" "ADAMTS18 WILD-TYPE" 
        TCGA-91-6828         TCGA-91-6829         TCGA-91-6831 
"ADAMTS18 WILD-TYPE"   "ADAMTS18 MUTATED" "ADAMTS18 WILD-TYPE" 
        TCGA-91-6835         TCGA-91-6836 
"ADAMTS18 WILD-TYPE" "ADAMTS18 WILD-TYPE" 
[1] "hr=" "1.7"
D109V2, continuous
D109V3, binary
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  ADAMTS18 MUTATED      7   10
  ADAMTS18 WILD-TYPE   86   69
        clus
vv       ADAMTS18 MUTATED ADAMTS18 WILD-TYPE
  FEMALE                7                 86
  MALE                 10                 69
D109V4, continuous
[1] "Remove cluster labels:" "ADAMTS18 MUTATED"      
clus
  ADAMTS18 MUTATED ADAMTS18 WILD-TYPE 
                 1                 11 
        TCGA-35-4122         TCGA-35-5375         TCGA-64-1677 
"ADAMTS18 WILD-TYPE" "ADAMTS18 WILD-TYPE" "ADAMTS18 WILD-TYPE" 
        TCGA-64-5778         TCGA-71-6725         TCGA-73-4659 
"ADAMTS18 WILD-TYPE" "ADAMTS18 WILD-TYPE" "ADAMTS18 WILD-TYPE" 
        TCGA-73-4662         TCGA-73-4666         TCGA-73-4668 
"ADAMTS18 WILD-TYPE" "ADAMTS18 WILD-TYPE" "ADAMTS18 WILD-TYPE" 
        TCGA-73-4676         TCGA-75-5122 
"ADAMTS18 WILD-TYPE" "ADAMTS18 WILD-TYPE" 
D109V5, multiclass
D109V6, multiclass
    clus
vv   ADAMTS18 MUTATED ADAMTS18 WILD-TYPE
  T1                4                 37
  T2               11                 97
  T3                0                 14
  T4                2                  6
D109V7, multiclass
       clus
vv      ADAMTS18 MUTATED ADAMTS18 WILD-TYPE
  N0                  10                 85
  N1                   5                 32
  N2+N3                2                 33
D109V8, multiclass
    clus
vv   ADAMTS18 MUTATED ADAMTS18 WILD-TYPE
  M0               12                125
  M1                1                  8
  MX                4                 18
D109V9, multiclass
     clus
vv    ADAMTS18 MUTATED ADAMTS18 WILD-TYPE
  I                 10                 78
  II                 3                 30
  III                3                 36
  IV                 1                  8
D109V10, binary
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  ADAMTS18 MUTATED      1   16
  ADAMTS18 WILD-TYPE   15  140
     clus
vv    ADAMTS18 MUTATED ADAMTS18 WILD-TYPE
  NO                 1                 15
  YES               16                140
D109V11, continuous
D109V12, continuous
D109V13, multiclass
                                             clus
vv                                            ADAMTS18 MUTATED
  CURRENT REFORMED SMOKER FOR < OR = 15 YEARS                8
  CURRENT REFORMED SMOKER FOR > 15 YEARS                     4
  CURRENT SMOKER                                             2
  LIFELONG NON-SMOKER                                        2
                                             clus
vv                                            ADAMTS18 WILD-TYPE
  CURRENT REFORMED SMOKER FOR < OR = 15 YEARS                 54
  CURRENT REFORMED SMOKER FOR > 15 YEARS                      42
  CURRENT SMOKER                                              26
  LIFELONG NON-SMOKER                                         22
D109V14, continuous

Clustering(110) Variable = OR4L1 MUTATION ANALYSIS
D110V1, survival
                 sevent
clus2              0  1
  OR4L1 MUTATED    3  2
  OR4L1 WILD-TYPE 96 48
  OR4L1 MUTATED OR4L1 WILD-TYPE 
              5             144 
  OR4L1 MUTATED OR4L1 WILD-TYPE 
              2              48 
$`OR4L1 MUTATED`
TCGA-05-4396 TCGA-44-3918 TCGA-44-5643 TCGA-44-6777 TCGA-91-6836 
        9.96         6.44         3.48        32.45         0.36 

$`OR4L1 WILD-TYPE`
TCGA-05-4249 TCGA-05-4250 TCGA-05-4382 TCGA-05-4384 TCGA-05-4390 TCGA-05-4397 
       38.07         3.98        19.92        14.01        37.02        24.03 
TCGA-05-4398 TCGA-05-4402 TCGA-05-4405 TCGA-05-4415 TCGA-05-4417 TCGA-05-4418 
       47.05         8.02        20.05         2.96        14.93         8.98 
TCGA-05-4420 TCGA-05-4424 TCGA-05-4426 TCGA-05-4427 TCGA-05-4430 TCGA-05-4432 
       29.95        30.02        26.01        26.01        25.02        25.02 
TCGA-05-4433 TCGA-05-4434 TCGA-05-5420 TCGA-05-5423 TCGA-05-5425 TCGA-05-5429 
       24.00        15.02         1.02         4.96         2.96         0.99 
TCGA-05-5715 TCGA-35-3615 TCGA-35-4122 TCGA-35-4123 TCGA-35-5375 TCGA-38-4625 
        2.04         0.46         7.36         5.95         8.68        47.61 
TCGA-38-4626 TCGA-38-4627 TCGA-38-4628 TCGA-38-4629 TCGA-38-4630 TCGA-38-4631 
       85.32        37.71        49.02        28.37        35.28        11.64 
TCGA-38-4632 TCGA-38-6178 TCGA-44-2655 TCGA-44-2656 TCGA-44-2657 TCGA-44-2659 
       44.61         5.19        18.87        19.10        13.15        17.39 
TCGA-44-2661 TCGA-44-2662 TCGA-44-2665 TCGA-44-2666 TCGA-44-2668 TCGA-44-3396 
        3.39        15.78        13.15         3.19         8.09        10.22 
TCGA-44-3398 TCGA-44-3919 TCGA-44-4112 TCGA-44-5645 TCGA-44-6144 TCGA-44-6145 
        8.32         6.21         4.60         6.84         0.30         3.35 
TCGA-44-6146 TCGA-44-6147 TCGA-44-6148 TCGA-44-6774 TCGA-44-6775 TCGA-44-6776 
        9.93         7.76         3.12         5.42         2.70        63.72 
TCGA-44-6778 TCGA-44-6779 TCGA-49-4486 TCGA-49-4487 TCGA-49-4488 TCGA-49-4490 
       36.49        16.41        76.21        28.11        28.57        12.66 
TCGA-49-4494 TCGA-49-4501 TCGA-49-4505 TCGA-49-4506 TCGA-49-4507 TCGA-49-4510 
       35.54        46.72        14.07        32.84         8.81        29.46 
TCGA-49-4512 TCGA-49-4514 TCGA-49-6742 TCGA-49-6743 TCGA-49-6744 TCGA-49-6745 
       29.75        43.20        15.02        12.13        12.99         4.93 
TCGA-50-5044 TCGA-50-5045 TCGA-50-5049 TCGA-50-5051 TCGA-50-5055 TCGA-50-5066 
       20.48        71.47        48.82        14.96        25.81         9.76 
TCGA-50-5068 TCGA-50-5072 TCGA-50-5930 TCGA-50-5931 TCGA-50-5932 TCGA-50-5933 
       49.28         8.05         9.27         8.78        35.87        77.88 
TCGA-50-5935 TCGA-50-5936 TCGA-50-5939 TCGA-50-5941 TCGA-50-5942 TCGA-50-5944 
       21.47         8.45        15.12         9.37         4.44        12.26 
TCGA-50-5946 TCGA-50-6590 TCGA-50-6591 TCGA-50-6592 TCGA-50-6593 TCGA-50-6594 
       11.47        42.31         3.88        25.51        11.05        12.16 
TCGA-50-6595 TCGA-50-6597 TCGA-55-1592 TCGA-55-1594 TCGA-55-1595 TCGA-55-1596 
        6.21        33.37        23.05        38.73        48.62        45.17 
TCGA-55-5899 TCGA-55-6543 TCGA-55-6642 TCGA-55-6712 TCGA-64-1676 TCGA-64-1677 
        2.86         0.07        32.61         0.79        56.81        20.65 
TCGA-64-1678 TCGA-64-1680 TCGA-64-5774 TCGA-64-5775 TCGA-64-5778 TCGA-64-5779 
       39.09        37.02        83.84         0.10        30.44        16.67 
TCGA-64-5781 TCGA-64-5815 TCGA-67-3770 TCGA-67-3771 TCGA-67-3772 TCGA-67-3773 
       39.52         7.33         0.99         1.97         0.59         2.04 
TCGA-67-3774 TCGA-67-6215 TCGA-67-6216 TCGA-67-6217 TCGA-71-6725 TCGA-73-4658 
        0.59         0.89         0.69        13.87         2.01        52.57 
TCGA-73-4659 TCGA-73-4662 TCGA-73-4666 TCGA-73-4668 TCGA-73-4670 TCGA-73-4675 
       23.38        29.95        20.28        15.35         0.46         1.32 
TCGA-73-4676 TCGA-73-4677 TCGA-91-6828 TCGA-91-6829 TCGA-91-6831 TCGA-91-6835 
        4.01         1.25         1.22        41.33         1.28         1.15 

  OR4L1 MUTATED OR4L1 WILD-TYPE 
           0.36            0.07 
  OR4L1 MUTATED OR4L1 WILD-TYPE 
          32.45           85.32 
  OR4L1 MUTATED OR4L1 WILD-TYPE 
           6.44           14.04 
[1] "0.4 - 32.5 (6.4)"  "0.1 - 85.3 (14.0)"
     TCGA-05-4249      TCGA-05-4250      TCGA-05-4382      TCGA-05-4384 
"OR4L1 WILD-TYPE" "OR4L1 WILD-TYPE" "OR4L1 WILD-TYPE" "OR4L1 WILD-TYPE" 
     TCGA-05-4390      TCGA-05-4396      TCGA-05-4397      TCGA-05-4398 
"OR4L1 WILD-TYPE"   "OR4L1 MUTATED" "OR4L1 WILD-TYPE" "OR4L1 WILD-TYPE" 
     TCGA-05-4402      TCGA-05-4405      TCGA-05-4415      TCGA-05-4417 
"OR4L1 WILD-TYPE" "OR4L1 WILD-TYPE" "OR4L1 WILD-TYPE" "OR4L1 WILD-TYPE" 
     TCGA-05-4418      TCGA-05-4420      TCGA-05-4424      TCGA-05-4426 
"OR4L1 WILD-TYPE" "OR4L1 WILD-TYPE" "OR4L1 WILD-TYPE" "OR4L1 WILD-TYPE" 
     TCGA-05-4427      TCGA-05-4430      TCGA-05-4432      TCGA-05-4433 
"OR4L1 WILD-TYPE" "OR4L1 WILD-TYPE" "OR4L1 WILD-TYPE" "OR4L1 WILD-TYPE" 
     TCGA-05-4434      TCGA-05-5420      TCGA-05-5423      TCGA-05-5425 
"OR4L1 WILD-TYPE" "OR4L1 WILD-TYPE" "OR4L1 WILD-TYPE" "OR4L1 WILD-TYPE" 
     TCGA-05-5429      TCGA-05-5715      TCGA-35-3615      TCGA-35-4122 
"OR4L1 WILD-TYPE" "OR4L1 WILD-TYPE" "OR4L1 WILD-TYPE" "OR4L1 WILD-TYPE" 
     TCGA-35-4123      TCGA-35-5375      TCGA-38-4625      TCGA-38-4626 
"OR4L1 WILD-TYPE" "OR4L1 WILD-TYPE" "OR4L1 WILD-TYPE" "OR4L1 WILD-TYPE" 
     TCGA-38-4627      TCGA-38-4628      TCGA-38-4629      TCGA-38-4630 
"OR4L1 WILD-TYPE" "OR4L1 WILD-TYPE" "OR4L1 WILD-TYPE" "OR4L1 WILD-TYPE" 
     TCGA-38-4631      TCGA-38-4632      TCGA-38-6178      TCGA-44-2655 
"OR4L1 WILD-TYPE" "OR4L1 WILD-TYPE" "OR4L1 WILD-TYPE" "OR4L1 WILD-TYPE" 
     TCGA-44-2656      TCGA-44-2657      TCGA-44-2659      TCGA-44-2661 
"OR4L1 WILD-TYPE" "OR4L1 WILD-TYPE" "OR4L1 WILD-TYPE" "OR4L1 WILD-TYPE" 
     TCGA-44-2662      TCGA-44-2665      TCGA-44-2666      TCGA-44-2668 
"OR4L1 WILD-TYPE" "OR4L1 WILD-TYPE" "OR4L1 WILD-TYPE" "OR4L1 WILD-TYPE" 
     TCGA-44-3396      TCGA-44-3398      TCGA-44-3918      TCGA-44-3919 
"OR4L1 WILD-TYPE" "OR4L1 WILD-TYPE"   "OR4L1 MUTATED" "OR4L1 WILD-TYPE" 
     TCGA-44-4112      TCGA-44-5643      TCGA-44-5645      TCGA-44-6144 
"OR4L1 WILD-TYPE"   "OR4L1 MUTATED" "OR4L1 WILD-TYPE" "OR4L1 WILD-TYPE" 
     TCGA-44-6145      TCGA-44-6146      TCGA-44-6147      TCGA-44-6148 
"OR4L1 WILD-TYPE" "OR4L1 WILD-TYPE" "OR4L1 WILD-TYPE" "OR4L1 WILD-TYPE" 
     TCGA-44-6774      TCGA-44-6775      TCGA-44-6776      TCGA-44-6777 
"OR4L1 WILD-TYPE" "OR4L1 WILD-TYPE" "OR4L1 WILD-TYPE"   "OR4L1 MUTATED" 
     TCGA-44-6778      TCGA-44-6779      TCGA-49-4486      TCGA-49-4487 
"OR4L1 WILD-TYPE" "OR4L1 WILD-TYPE" "OR4L1 WILD-TYPE" "OR4L1 WILD-TYPE" 
     TCGA-49-4488      TCGA-49-4490      TCGA-49-4494      TCGA-49-4501 
"OR4L1 WILD-TYPE" "OR4L1 WILD-TYPE" "OR4L1 WILD-TYPE" "OR4L1 WILD-TYPE" 
     TCGA-49-4505      TCGA-49-4506      TCGA-49-4507      TCGA-49-4510 
"OR4L1 WILD-TYPE" "OR4L1 WILD-TYPE" "OR4L1 WILD-TYPE" "OR4L1 WILD-TYPE" 
     TCGA-49-4512      TCGA-49-4514      TCGA-49-6742      TCGA-49-6743 
"OR4L1 WILD-TYPE" "OR4L1 WILD-TYPE" "OR4L1 WILD-TYPE" "OR4L1 WILD-TYPE" 
     TCGA-49-6744      TCGA-49-6745      TCGA-50-5044      TCGA-50-5045 
"OR4L1 WILD-TYPE" "OR4L1 WILD-TYPE" "OR4L1 WILD-TYPE" "OR4L1 WILD-TYPE" 
     TCGA-50-5049      TCGA-50-5051      TCGA-50-5055      TCGA-50-5066 
"OR4L1 WILD-TYPE" "OR4L1 WILD-TYPE" "OR4L1 WILD-TYPE" "OR4L1 WILD-TYPE" 
     TCGA-50-5068      TCGA-50-5072      TCGA-50-5930      TCGA-50-5931 
"OR4L1 WILD-TYPE" "OR4L1 WILD-TYPE" "OR4L1 WILD-TYPE" "OR4L1 WILD-TYPE" 
     TCGA-50-5932      TCGA-50-5933      TCGA-50-5935      TCGA-50-5936 
"OR4L1 WILD-TYPE" "OR4L1 WILD-TYPE" "OR4L1 WILD-TYPE" "OR4L1 WILD-TYPE" 
     TCGA-50-5939      TCGA-50-5941      TCGA-50-5942      TCGA-50-5944 
"OR4L1 WILD-TYPE" "OR4L1 WILD-TYPE" "OR4L1 WILD-TYPE" "OR4L1 WILD-TYPE" 
     TCGA-50-5946      TCGA-50-6590      TCGA-50-6591      TCGA-50-6592 
"OR4L1 WILD-TYPE" "OR4L1 WILD-TYPE" "OR4L1 WILD-TYPE" "OR4L1 WILD-TYPE" 
     TCGA-50-6593      TCGA-50-6594      TCGA-50-6595      TCGA-50-6597 
"OR4L1 WILD-TYPE" "OR4L1 WILD-TYPE" "OR4L1 WILD-TYPE" "OR4L1 WILD-TYPE" 
     TCGA-55-1592      TCGA-55-1594      TCGA-55-1595      TCGA-55-1596 
"OR4L1 WILD-TYPE" "OR4L1 WILD-TYPE" "OR4L1 WILD-TYPE" "OR4L1 WILD-TYPE" 
     TCGA-55-5899      TCGA-55-6543      TCGA-55-6642      TCGA-55-6712 
"OR4L1 WILD-TYPE" "OR4L1 WILD-TYPE" "OR4L1 WILD-TYPE" "OR4L1 WILD-TYPE" 
     TCGA-64-1676      TCGA-64-1677      TCGA-64-1678      TCGA-64-1680 
"OR4L1 WILD-TYPE" "OR4L1 WILD-TYPE" "OR4L1 WILD-TYPE" "OR4L1 WILD-TYPE" 
     TCGA-64-5774      TCGA-64-5775      TCGA-64-5778      TCGA-64-5779 
"OR4L1 WILD-TYPE" "OR4L1 WILD-TYPE" "OR4L1 WILD-TYPE" "OR4L1 WILD-TYPE" 
     TCGA-64-5781      TCGA-64-5815      TCGA-67-3770      TCGA-67-3771 
"OR4L1 WILD-TYPE" "OR4L1 WILD-TYPE" "OR4L1 WILD-TYPE" "OR4L1 WILD-TYPE" 
     TCGA-67-3772      TCGA-67-3773      TCGA-67-3774      TCGA-67-6215 
"OR4L1 WILD-TYPE" "OR4L1 WILD-TYPE" "OR4L1 WILD-TYPE" "OR4L1 WILD-TYPE" 
     TCGA-67-6216      TCGA-67-6217      TCGA-71-6725      TCGA-73-4658 
"OR4L1 WILD-TYPE" "OR4L1 WILD-TYPE" "OR4L1 WILD-TYPE" "OR4L1 WILD-TYPE" 
     TCGA-73-4659      TCGA-73-4662      TCGA-73-4666      TCGA-73-4668 
"OR4L1 WILD-TYPE" "OR4L1 WILD-TYPE" "OR4L1 WILD-TYPE" "OR4L1 WILD-TYPE" 
     TCGA-73-4670      TCGA-73-4675      TCGA-73-4676      TCGA-73-4677 
"OR4L1 WILD-TYPE" "OR4L1 WILD-TYPE" "OR4L1 WILD-TYPE" "OR4L1 WILD-TYPE" 
     TCGA-91-6828      TCGA-91-6829      TCGA-91-6831      TCGA-91-6835 
"OR4L1 WILD-TYPE" "OR4L1 WILD-TYPE" "OR4L1 WILD-TYPE" "OR4L1 WILD-TYPE" 
     TCGA-91-6836 
  "OR4L1 MUTATED" 
     TCGA-05-4249      TCGA-05-4250      TCGA-05-4382      TCGA-05-4384 
"OR4L1 WILD-TYPE" "OR4L1 WILD-TYPE" "OR4L1 WILD-TYPE" "OR4L1 WILD-TYPE" 
     TCGA-05-4390      TCGA-05-4396      TCGA-05-4397      TCGA-05-4398 
"OR4L1 WILD-TYPE"   "OR4L1 MUTATED" "OR4L1 WILD-TYPE" "OR4L1 WILD-TYPE" 
     TCGA-05-4402      TCGA-05-4405      TCGA-05-4415      TCGA-05-4417 
"OR4L1 WILD-TYPE" "OR4L1 WILD-TYPE" "OR4L1 WILD-TYPE" "OR4L1 WILD-TYPE" 
     TCGA-05-4418      TCGA-05-4420      TCGA-05-4424      TCGA-05-4426 
"OR4L1 WILD-TYPE" "OR4L1 WILD-TYPE" "OR4L1 WILD-TYPE" "OR4L1 WILD-TYPE" 
     TCGA-05-4427      TCGA-05-4430      TCGA-05-4432      TCGA-05-4433 
"OR4L1 WILD-TYPE" "OR4L1 WILD-TYPE" "OR4L1 WILD-TYPE" "OR4L1 WILD-TYPE" 
     TCGA-05-4434      TCGA-05-5420      TCGA-05-5423      TCGA-05-5425 
"OR4L1 WILD-TYPE" "OR4L1 WILD-TYPE" "OR4L1 WILD-TYPE" "OR4L1 WILD-TYPE" 
     TCGA-05-5429      TCGA-05-5715      TCGA-35-3615      TCGA-35-4122 
"OR4L1 WILD-TYPE" "OR4L1 WILD-TYPE" "OR4L1 WILD-TYPE" "OR4L1 WILD-TYPE" 
     TCGA-35-4123      TCGA-35-5375      TCGA-38-4625      TCGA-38-4626 
"OR4L1 WILD-TYPE" "OR4L1 WILD-TYPE" "OR4L1 WILD-TYPE" "OR4L1 WILD-TYPE" 
     TCGA-38-4627      TCGA-38-4628      TCGA-38-4629      TCGA-38-4630 
"OR4L1 WILD-TYPE" "OR4L1 WILD-TYPE" "OR4L1 WILD-TYPE" "OR4L1 WILD-TYPE" 
     TCGA-38-4631      TCGA-38-4632      TCGA-38-6178      TCGA-44-2655 
"OR4L1 WILD-TYPE" "OR4L1 WILD-TYPE" "OR4L1 WILD-TYPE" "OR4L1 WILD-TYPE" 
     TCGA-44-2656      TCGA-44-2657      TCGA-44-2659      TCGA-44-2661 
"OR4L1 WILD-TYPE" "OR4L1 WILD-TYPE" "OR4L1 WILD-TYPE" "OR4L1 WILD-TYPE" 
     TCGA-44-2662      TCGA-44-2665      TCGA-44-2666      TCGA-44-2668 
"OR4L1 WILD-TYPE" "OR4L1 WILD-TYPE" "OR4L1 WILD-TYPE" "OR4L1 WILD-TYPE" 
     TCGA-44-3396      TCGA-44-3398      TCGA-44-3918      TCGA-44-3919 
"OR4L1 WILD-TYPE" "OR4L1 WILD-TYPE"   "OR4L1 MUTATED" "OR4L1 WILD-TYPE" 
     TCGA-44-4112      TCGA-44-5643      TCGA-44-5645      TCGA-44-6144 
"OR4L1 WILD-TYPE"   "OR4L1 MUTATED" "OR4L1 WILD-TYPE" "OR4L1 WILD-TYPE" 
     TCGA-44-6145      TCGA-44-6146      TCGA-44-6147      TCGA-44-6148 
"OR4L1 WILD-TYPE" "OR4L1 WILD-TYPE" "OR4L1 WILD-TYPE" "OR4L1 WILD-TYPE" 
     TCGA-44-6774      TCGA-44-6775      TCGA-44-6776      TCGA-44-6777 
"OR4L1 WILD-TYPE" "OR4L1 WILD-TYPE" "OR4L1 WILD-TYPE"   "OR4L1 MUTATED" 
     TCGA-44-6778      TCGA-44-6779      TCGA-49-4486      TCGA-49-4487 
"OR4L1 WILD-TYPE" "OR4L1 WILD-TYPE" "OR4L1 WILD-TYPE" "OR4L1 WILD-TYPE" 
     TCGA-49-4488      TCGA-49-4490      TCGA-49-4494      TCGA-49-4501 
"OR4L1 WILD-TYPE" "OR4L1 WILD-TYPE" "OR4L1 WILD-TYPE" "OR4L1 WILD-TYPE" 
     TCGA-49-4505      TCGA-49-4506      TCGA-49-4507      TCGA-49-4510 
"OR4L1 WILD-TYPE" "OR4L1 WILD-TYPE" "OR4L1 WILD-TYPE" "OR4L1 WILD-TYPE" 
     TCGA-49-4512      TCGA-49-4514      TCGA-49-6742      TCGA-49-6743 
"OR4L1 WILD-TYPE" "OR4L1 WILD-TYPE" "OR4L1 WILD-TYPE" "OR4L1 WILD-TYPE" 
     TCGA-49-6744      TCGA-49-6745      TCGA-50-5044      TCGA-50-5045 
"OR4L1 WILD-TYPE" "OR4L1 WILD-TYPE" "OR4L1 WILD-TYPE" "OR4L1 WILD-TYPE" 
     TCGA-50-5049      TCGA-50-5051      TCGA-50-5055      TCGA-50-5066 
"OR4L1 WILD-TYPE" "OR4L1 WILD-TYPE" "OR4L1 WILD-TYPE" "OR4L1 WILD-TYPE" 
     TCGA-50-5068      TCGA-50-5072      TCGA-50-5930      TCGA-50-5931 
"OR4L1 WILD-TYPE" "OR4L1 WILD-TYPE" "OR4L1 WILD-TYPE" "OR4L1 WILD-TYPE" 
     TCGA-50-5932      TCGA-50-5933      TCGA-50-5935      TCGA-50-5936 
"OR4L1 WILD-TYPE" "OR4L1 WILD-TYPE" "OR4L1 WILD-TYPE" "OR4L1 WILD-TYPE" 
     TCGA-50-5939      TCGA-50-5941      TCGA-50-5942      TCGA-50-5944 
"OR4L1 WILD-TYPE" "OR4L1 WILD-TYPE" "OR4L1 WILD-TYPE" "OR4L1 WILD-TYPE" 
     TCGA-50-5946      TCGA-50-6590      TCGA-50-6591      TCGA-50-6592 
"OR4L1 WILD-TYPE" "OR4L1 WILD-TYPE" "OR4L1 WILD-TYPE" "OR4L1 WILD-TYPE" 
     TCGA-50-6593      TCGA-50-6594      TCGA-50-6595      TCGA-50-6597 
"OR4L1 WILD-TYPE" "OR4L1 WILD-TYPE" "OR4L1 WILD-TYPE" "OR4L1 WILD-TYPE" 
     TCGA-55-1592      TCGA-55-1594      TCGA-55-1595      TCGA-55-1596 
"OR4L1 WILD-TYPE" "OR4L1 WILD-TYPE" "OR4L1 WILD-TYPE" "OR4L1 WILD-TYPE" 
     TCGA-55-5899      TCGA-55-6543      TCGA-55-6642      TCGA-55-6712 
"OR4L1 WILD-TYPE" "OR4L1 WILD-TYPE" "OR4L1 WILD-TYPE" "OR4L1 WILD-TYPE" 
     TCGA-64-1676      TCGA-64-1677      TCGA-64-1678      TCGA-64-1680 
"OR4L1 WILD-TYPE" "OR4L1 WILD-TYPE" "OR4L1 WILD-TYPE" "OR4L1 WILD-TYPE" 
     TCGA-64-5774      TCGA-64-5775      TCGA-64-5778      TCGA-64-5779 
"OR4L1 WILD-TYPE" "OR4L1 WILD-TYPE" "OR4L1 WILD-TYPE" "OR4L1 WILD-TYPE" 
     TCGA-64-5781      TCGA-64-5815      TCGA-67-3770      TCGA-67-3771 
"OR4L1 WILD-TYPE" "OR4L1 WILD-TYPE" "OR4L1 WILD-TYPE" "OR4L1 WILD-TYPE" 
     TCGA-67-3772      TCGA-67-3773      TCGA-67-3774      TCGA-67-6215 
"OR4L1 WILD-TYPE" "OR4L1 WILD-TYPE" "OR4L1 WILD-TYPE" "OR4L1 WILD-TYPE" 
     TCGA-67-6216      TCGA-67-6217      TCGA-71-6725      TCGA-73-4658 
"OR4L1 WILD-TYPE" "OR4L1 WILD-TYPE" "OR4L1 WILD-TYPE" "OR4L1 WILD-TYPE" 
     TCGA-73-4659      TCGA-73-4662      TCGA-73-4666      TCGA-73-4668 
"OR4L1 WILD-TYPE" "OR4L1 WILD-TYPE" "OR4L1 WILD-TYPE" "OR4L1 WILD-TYPE" 
     TCGA-73-4670      TCGA-73-4675      TCGA-73-4676      TCGA-73-4677 
"OR4L1 WILD-TYPE" "OR4L1 WILD-TYPE" "OR4L1 WILD-TYPE" "OR4L1 WILD-TYPE" 
     TCGA-91-6828      TCGA-91-6829      TCGA-91-6831      TCGA-91-6835 
"OR4L1 WILD-TYPE" "OR4L1 WILD-TYPE" "OR4L1 WILD-TYPE" "OR4L1 WILD-TYPE" 
     TCGA-91-6836 
  "OR4L1 MUTATED" 
     TCGA-05-4249      TCGA-05-4250      TCGA-05-4382      TCGA-05-4384 
"OR4L1 WILD-TYPE" "OR4L1 WILD-TYPE" "OR4L1 WILD-TYPE" "OR4L1 WILD-TYPE" 
     TCGA-05-4390      TCGA-05-4396      TCGA-05-4397      TCGA-05-4398 
"OR4L1 WILD-TYPE"   "OR4L1 MUTATED" "OR4L1 WILD-TYPE" "OR4L1 WILD-TYPE" 
     TCGA-05-4402      TCGA-05-4405      TCGA-05-4415      TCGA-05-4417 
"OR4L1 WILD-TYPE" "OR4L1 WILD-TYPE" "OR4L1 WILD-TYPE" "OR4L1 WILD-TYPE" 
     TCGA-05-4418      TCGA-05-4420      TCGA-05-4424      TCGA-05-4426 
"OR4L1 WILD-TYPE" "OR4L1 WILD-TYPE" "OR4L1 WILD-TYPE" "OR4L1 WILD-TYPE" 
     TCGA-05-4427      TCGA-05-4430      TCGA-05-4432      TCGA-05-4433 
"OR4L1 WILD-TYPE" "OR4L1 WILD-TYPE" "OR4L1 WILD-TYPE" "OR4L1 WILD-TYPE" 
     TCGA-05-4434      TCGA-05-5420      TCGA-05-5423      TCGA-05-5425 
"OR4L1 WILD-TYPE" "OR4L1 WILD-TYPE" "OR4L1 WILD-TYPE" "OR4L1 WILD-TYPE" 
     TCGA-05-5429      TCGA-05-5715      TCGA-35-3615      TCGA-35-4122 
"OR4L1 WILD-TYPE" "OR4L1 WILD-TYPE" "OR4L1 WILD-TYPE" "OR4L1 WILD-TYPE" 
     TCGA-35-4123      TCGA-35-5375      TCGA-38-4625      TCGA-38-4626 
"OR4L1 WILD-TYPE" "OR4L1 WILD-TYPE" "OR4L1 WILD-TYPE" "OR4L1 WILD-TYPE" 
     TCGA-38-4627      TCGA-38-4628      TCGA-38-4629      TCGA-38-4630 
"OR4L1 WILD-TYPE" "OR4L1 WILD-TYPE" "OR4L1 WILD-TYPE" "OR4L1 WILD-TYPE" 
     TCGA-38-4631      TCGA-38-4632      TCGA-38-6178      TCGA-44-2655 
"OR4L1 WILD-TYPE" "OR4L1 WILD-TYPE" "OR4L1 WILD-TYPE" "OR4L1 WILD-TYPE" 
     TCGA-44-2656      TCGA-44-2657      TCGA-44-2659      TCGA-44-2661 
"OR4L1 WILD-TYPE" "OR4L1 WILD-TYPE" "OR4L1 WILD-TYPE" "OR4L1 WILD-TYPE" 
     TCGA-44-2662      TCGA-44-2665      TCGA-44-2666      TCGA-44-2668 
"OR4L1 WILD-TYPE" "OR4L1 WILD-TYPE" "OR4L1 WILD-TYPE" "OR4L1 WILD-TYPE" 
     TCGA-44-3396      TCGA-44-3398      TCGA-44-3918      TCGA-44-3919 
"OR4L1 WILD-TYPE" "OR4L1 WILD-TYPE"   "OR4L1 MUTATED" "OR4L1 WILD-TYPE" 
     TCGA-44-4112      TCGA-44-5643      TCGA-44-5645      TCGA-44-6144 
"OR4L1 WILD-TYPE"   "OR4L1 MUTATED" "OR4L1 WILD-TYPE" "OR4L1 WILD-TYPE" 
     TCGA-44-6145      TCGA-44-6146      TCGA-44-6147      TCGA-44-6148 
"OR4L1 WILD-TYPE" "OR4L1 WILD-TYPE" "OR4L1 WILD-TYPE" "OR4L1 WILD-TYPE" 
     TCGA-44-6774      TCGA-44-6775      TCGA-44-6776      TCGA-44-6777 
"OR4L1 WILD-TYPE" "OR4L1 WILD-TYPE" "OR4L1 WILD-TYPE"   "OR4L1 MUTATED" 
     TCGA-44-6778      TCGA-44-6779      TCGA-49-4486      TCGA-49-4487 
"OR4L1 WILD-TYPE" "OR4L1 WILD-TYPE" "OR4L1 WILD-TYPE" "OR4L1 WILD-TYPE" 
     TCGA-49-4488      TCGA-49-4490      TCGA-49-4494      TCGA-49-4501 
"OR4L1 WILD-TYPE" "OR4L1 WILD-TYPE" "OR4L1 WILD-TYPE" "OR4L1 WILD-TYPE" 
     TCGA-49-4505      TCGA-49-4506      TCGA-49-4507      TCGA-49-4510 
"OR4L1 WILD-TYPE" "OR4L1 WILD-TYPE" "OR4L1 WILD-TYPE" "OR4L1 WILD-TYPE" 
     TCGA-49-4512      TCGA-49-4514      TCGA-49-6742      TCGA-49-6743 
"OR4L1 WILD-TYPE" "OR4L1 WILD-TYPE" "OR4L1 WILD-TYPE" "OR4L1 WILD-TYPE" 
     TCGA-49-6744      TCGA-49-6745      TCGA-50-5044      TCGA-50-5045 
"OR4L1 WILD-TYPE" "OR4L1 WILD-TYPE" "OR4L1 WILD-TYPE" "OR4L1 WILD-TYPE" 
     TCGA-50-5049      TCGA-50-5051      TCGA-50-5055      TCGA-50-5066 
"OR4L1 WILD-TYPE" "OR4L1 WILD-TYPE" "OR4L1 WILD-TYPE" "OR4L1 WILD-TYPE" 
     TCGA-50-5068      TCGA-50-5072      TCGA-50-5930      TCGA-50-5931 
"OR4L1 WILD-TYPE" "OR4L1 WILD-TYPE" "OR4L1 WILD-TYPE" "OR4L1 WILD-TYPE" 
     TCGA-50-5932      TCGA-50-5933      TCGA-50-5935      TCGA-50-5936 
"OR4L1 WILD-TYPE" "OR4L1 WILD-TYPE" "OR4L1 WILD-TYPE" "OR4L1 WILD-TYPE" 
     TCGA-50-5939      TCGA-50-5941      TCGA-50-5942      TCGA-50-5944 
"OR4L1 WILD-TYPE" "OR4L1 WILD-TYPE" "OR4L1 WILD-TYPE" "OR4L1 WILD-TYPE" 
     TCGA-50-5946      TCGA-50-6590      TCGA-50-6591      TCGA-50-6592 
"OR4L1 WILD-TYPE" "OR4L1 WILD-TYPE" "OR4L1 WILD-TYPE" "OR4L1 WILD-TYPE" 
     TCGA-50-6593      TCGA-50-6594      TCGA-50-6595      TCGA-50-6597 
"OR4L1 WILD-TYPE" "OR4L1 WILD-TYPE" "OR4L1 WILD-TYPE" "OR4L1 WILD-TYPE" 
     TCGA-55-1592      TCGA-55-1594      TCGA-55-1595      TCGA-55-1596 
"OR4L1 WILD-TYPE" "OR4L1 WILD-TYPE" "OR4L1 WILD-TYPE" "OR4L1 WILD-TYPE" 
     TCGA-55-5899      TCGA-55-6543      TCGA-55-6642      TCGA-55-6712 
"OR4L1 WILD-TYPE" "OR4L1 WILD-TYPE" "OR4L1 WILD-TYPE" "OR4L1 WILD-TYPE" 
     TCGA-64-1676      TCGA-64-1677      TCGA-64-1678      TCGA-64-1680 
"OR4L1 WILD-TYPE" "OR4L1 WILD-TYPE" "OR4L1 WILD-TYPE" "OR4L1 WILD-TYPE" 
     TCGA-64-5774      TCGA-64-5775      TCGA-64-5778      TCGA-64-5779 
"OR4L1 WILD-TYPE" "OR4L1 WILD-TYPE" "OR4L1 WILD-TYPE" "OR4L1 WILD-TYPE" 
     TCGA-64-5781      TCGA-64-5815      TCGA-67-3770      TCGA-67-3771 
"OR4L1 WILD-TYPE" "OR4L1 WILD-TYPE" "OR4L1 WILD-TYPE" "OR4L1 WILD-TYPE" 
     TCGA-67-3772      TCGA-67-3773      TCGA-67-3774      TCGA-67-6215 
"OR4L1 WILD-TYPE" "OR4L1 WILD-TYPE" "OR4L1 WILD-TYPE" "OR4L1 WILD-TYPE" 
     TCGA-67-6216      TCGA-67-6217      TCGA-71-6725      TCGA-73-4658 
"OR4L1 WILD-TYPE" "OR4L1 WILD-TYPE" "OR4L1 WILD-TYPE" "OR4L1 WILD-TYPE" 
     TCGA-73-4659      TCGA-73-4662      TCGA-73-4666      TCGA-73-4668 
"OR4L1 WILD-TYPE" "OR4L1 WILD-TYPE" "OR4L1 WILD-TYPE" "OR4L1 WILD-TYPE" 
     TCGA-73-4670      TCGA-73-4675      TCGA-73-4676      TCGA-73-4677 
"OR4L1 WILD-TYPE" "OR4L1 WILD-TYPE" "OR4L1 WILD-TYPE" "OR4L1 WILD-TYPE" 
     TCGA-91-6828      TCGA-91-6829      TCGA-91-6831      TCGA-91-6835 
"OR4L1 WILD-TYPE" "OR4L1 WILD-TYPE" "OR4L1 WILD-TYPE" "OR4L1 WILD-TYPE" 
     TCGA-91-6836 
  "OR4L1 MUTATED" 
[1] "hr=" "2.8"
D110V2, continuous
D110V3, binary
[1] "tbl2"
                 cls
clus              [,1] [,2]
  OR4L1 MUTATED      4    3
  OR4L1 WILD-TYPE   89   76
        clus
vv       OR4L1 MUTATED OR4L1 WILD-TYPE
  FEMALE             4              89
  MALE               3              76
D110V4, continuous
D110V5, multiclass
D110V6, multiclass
    clus
vv   OR4L1 MUTATED OR4L1 WILD-TYPE
  T1             1              40
  T2             4             104
  T3             1              13
  T4             1               7
D110V7, multiclass
       clus
vv      OR4L1 MUTATED OR4L1 WILD-TYPE
  N0                4              91
  N1                1              36
  N2+N3             1              34
D110V8, multiclass
    clus
vv   OR4L1 MUTATED OR4L1 WILD-TYPE
  M0             4             133
  M1             0               9
  MX             3              19
D110V9, multiclass
     clus
vv    OR4L1 MUTATED OR4L1 WILD-TYPE
  I               4              84
  II              1              32
  III             2              37
  IV              0               9
D110V10, binary
[1] "tbl2"
                 cls
clus              [,1] [,2]
  OR4L1 MUTATED      2    5
  OR4L1 WILD-TYPE   14  151
     clus
vv    OR4L1 MUTATED OR4L1 WILD-TYPE
  NO              2              14
  YES             5             151
D110V11, continuous
D110V12, continuous
D110V13, multiclass
                                             clus
vv                                            OR4L1 MUTATED OR4L1 WILD-TYPE
  CURRENT REFORMED SMOKER FOR < OR = 15 YEARS             2              60
  CURRENT REFORMED SMOKER FOR > 15 YEARS                  2              44
  CURRENT SMOKER                                          3              25
  LIFELONG NON-SMOKER                                     0              24
D110V14, continuous

Clustering(111) Variable = BCHE MUTATION ANALYSIS
D111V1, survival
                sevent
clus2             0  1
  BCHE MUTATED    5  2
  BCHE WILD-TYPE 94 48
  BCHE MUTATED BCHE WILD-TYPE 
             7            142 
  BCHE MUTATED BCHE WILD-TYPE 
             2             48 
$`BCHE MUTATED`
TCGA-44-2662 TCGA-44-2668 TCGA-44-3398 TCGA-50-5931 TCGA-50-6590 TCGA-64-5781 
       15.78         8.09         8.32         8.78        42.31        39.52 
TCGA-64-5815 
        7.33 

$`BCHE WILD-TYPE`
TCGA-05-4249 TCGA-05-4250 TCGA-05-4382 TCGA-05-4384 TCGA-05-4390 TCGA-05-4396 
       38.07         3.98        19.92        14.01        37.02         9.96 
TCGA-05-4397 TCGA-05-4398 TCGA-05-4402 TCGA-05-4405 TCGA-05-4415 TCGA-05-4417 
       24.03        47.05         8.02        20.05         2.96        14.93 
TCGA-05-4418 TCGA-05-4420 TCGA-05-4424 TCGA-05-4426 TCGA-05-4427 TCGA-05-4430 
        8.98        29.95        30.02        26.01        26.01        25.02 
TCGA-05-4432 TCGA-05-4433 TCGA-05-4434 TCGA-05-5420 TCGA-05-5423 TCGA-05-5425 
       25.02        24.00        15.02         1.02         4.96         2.96 
TCGA-05-5429 TCGA-05-5715 TCGA-35-3615 TCGA-35-4122 TCGA-35-4123 TCGA-35-5375 
        0.99         2.04         0.46         7.36         5.95         8.68 
TCGA-38-4625 TCGA-38-4626 TCGA-38-4627 TCGA-38-4628 TCGA-38-4629 TCGA-38-4630 
       47.61        85.32        37.71        49.02        28.37        35.28 
TCGA-38-4631 TCGA-38-4632 TCGA-38-6178 TCGA-44-2655 TCGA-44-2656 TCGA-44-2657 
       11.64        44.61         5.19        18.87        19.10        13.15 
TCGA-44-2659 TCGA-44-2661 TCGA-44-2665 TCGA-44-2666 TCGA-44-3396 TCGA-44-3918 
       17.39         3.39        13.15         3.19        10.22         6.44 
TCGA-44-3919 TCGA-44-4112 TCGA-44-5643 TCGA-44-5645 TCGA-44-6144 TCGA-44-6145 
        6.21         4.60         3.48         6.84         0.30         3.35 
TCGA-44-6146 TCGA-44-6147 TCGA-44-6148 TCGA-44-6774 TCGA-44-6775 TCGA-44-6776 
        9.93         7.76         3.12         5.42         2.70        63.72 
TCGA-44-6777 TCGA-44-6778 TCGA-44-6779 TCGA-49-4486 TCGA-49-4487 TCGA-49-4488 
       32.45        36.49        16.41        76.21        28.11        28.57 
TCGA-49-4490 TCGA-49-4494 TCGA-49-4501 TCGA-49-4505 TCGA-49-4506 TCGA-49-4507 
       12.66        35.54        46.72        14.07        32.84         8.81 
TCGA-49-4510 TCGA-49-4512 TCGA-49-4514 TCGA-49-6742 TCGA-49-6743 TCGA-49-6744 
       29.46        29.75        43.20        15.02        12.13        12.99 
TCGA-49-6745 TCGA-50-5044 TCGA-50-5045 TCGA-50-5049 TCGA-50-5051 TCGA-50-5055 
        4.93        20.48        71.47        48.82        14.96        25.81 
TCGA-50-5066 TCGA-50-5068 TCGA-50-5072 TCGA-50-5930 TCGA-50-5932 TCGA-50-5933 
        9.76        49.28         8.05         9.27        35.87        77.88 
TCGA-50-5935 TCGA-50-5936 TCGA-50-5939 TCGA-50-5941 TCGA-50-5942 TCGA-50-5944 
       21.47         8.45        15.12         9.37         4.44        12.26 
TCGA-50-5946 TCGA-50-6591 TCGA-50-6592 TCGA-50-6593 TCGA-50-6594 TCGA-50-6595 
       11.47         3.88        25.51        11.05        12.16         6.21 
TCGA-50-6597 TCGA-55-1592 TCGA-55-1594 TCGA-55-1595 TCGA-55-1596 TCGA-55-5899 
       33.37        23.05        38.73        48.62        45.17         2.86 
TCGA-55-6543 TCGA-55-6642 TCGA-55-6712 TCGA-64-1676 TCGA-64-1677 TCGA-64-1678 
        0.07        32.61         0.79        56.81        20.65        39.09 
TCGA-64-1680 TCGA-64-5774 TCGA-64-5775 TCGA-64-5778 TCGA-64-5779 TCGA-67-3770 
       37.02        83.84         0.10        30.44        16.67         0.99 
TCGA-67-3771 TCGA-67-3772 TCGA-67-3773 TCGA-67-3774 TCGA-67-6215 TCGA-67-6216 
        1.97         0.59         2.04         0.59         0.89         0.69 
TCGA-67-6217 TCGA-71-6725 TCGA-73-4658 TCGA-73-4659 TCGA-73-4662 TCGA-73-4666 
       13.87         2.01        52.57        23.38        29.95        20.28 
TCGA-73-4668 TCGA-73-4670 TCGA-73-4675 TCGA-73-4676 TCGA-73-4677 TCGA-91-6828 
       15.35         0.46         1.32         4.01         1.25         1.22 
TCGA-91-6829 TCGA-91-6831 TCGA-91-6835 TCGA-91-6836 
       41.33         1.28         1.15         0.36 

  BCHE MUTATED BCHE WILD-TYPE 
          7.33           0.07 
  BCHE MUTATED BCHE WILD-TYPE 
         42.31          85.32 
  BCHE MUTATED BCHE WILD-TYPE 
          8.78          13.94 
[1] "7.3 - 42.3 (8.8)"  "0.1 - 85.3 (13.9)"
    TCGA-05-4249     TCGA-05-4250     TCGA-05-4382     TCGA-05-4384 
"BCHE WILD-TYPE" "BCHE WILD-TYPE" "BCHE WILD-TYPE" "BCHE WILD-TYPE" 
    TCGA-05-4390     TCGA-05-4396     TCGA-05-4397     TCGA-05-4398 
"BCHE WILD-TYPE" "BCHE WILD-TYPE" "BCHE WILD-TYPE" "BCHE WILD-TYPE" 
    TCGA-05-4402     TCGA-05-4405     TCGA-05-4415     TCGA-05-4417 
"BCHE WILD-TYPE" "BCHE WILD-TYPE" "BCHE WILD-TYPE" "BCHE WILD-TYPE" 
    TCGA-05-4418     TCGA-05-4420     TCGA-05-4424     TCGA-05-4426 
"BCHE WILD-TYPE" "BCHE WILD-TYPE" "BCHE WILD-TYPE" "BCHE WILD-TYPE" 
    TCGA-05-4427     TCGA-05-4430     TCGA-05-4432     TCGA-05-4433 
"BCHE WILD-TYPE" "BCHE WILD-TYPE" "BCHE WILD-TYPE" "BCHE WILD-TYPE" 
    TCGA-05-4434     TCGA-05-5420     TCGA-05-5423     TCGA-05-5425 
"BCHE WILD-TYPE" "BCHE WILD-TYPE" "BCHE WILD-TYPE" "BCHE WILD-TYPE" 
    TCGA-05-5429     TCGA-05-5715     TCGA-35-3615     TCGA-35-4122 
"BCHE WILD-TYPE" "BCHE WILD-TYPE" "BCHE WILD-TYPE" "BCHE WILD-TYPE" 
    TCGA-35-4123     TCGA-35-5375     TCGA-38-4625     TCGA-38-4626 
"BCHE WILD-TYPE" "BCHE WILD-TYPE" "BCHE WILD-TYPE" "BCHE WILD-TYPE" 
    TCGA-38-4627     TCGA-38-4628     TCGA-38-4629     TCGA-38-4630 
"BCHE WILD-TYPE" "BCHE WILD-TYPE" "BCHE WILD-TYPE" "BCHE WILD-TYPE" 
    TCGA-38-4631     TCGA-38-4632     TCGA-38-6178     TCGA-44-2655 
"BCHE WILD-TYPE" "BCHE WILD-TYPE" "BCHE WILD-TYPE" "BCHE WILD-TYPE" 
    TCGA-44-2656     TCGA-44-2657     TCGA-44-2659     TCGA-44-2661 
"BCHE WILD-TYPE" "BCHE WILD-TYPE" "BCHE WILD-TYPE" "BCHE WILD-TYPE" 
    TCGA-44-2662     TCGA-44-2665     TCGA-44-2666     TCGA-44-2668 
  "BCHE MUTATED" "BCHE WILD-TYPE" "BCHE WILD-TYPE"   "BCHE MUTATED" 
    TCGA-44-3396     TCGA-44-3398     TCGA-44-3918     TCGA-44-3919 
"BCHE WILD-TYPE"   "BCHE MUTATED" "BCHE WILD-TYPE" "BCHE WILD-TYPE" 
    TCGA-44-4112     TCGA-44-5643     TCGA-44-5645     TCGA-44-6144 
"BCHE WILD-TYPE" "BCHE WILD-TYPE" "BCHE WILD-TYPE" "BCHE WILD-TYPE" 
    TCGA-44-6145     TCGA-44-6146     TCGA-44-6147     TCGA-44-6148 
"BCHE WILD-TYPE" "BCHE WILD-TYPE" "BCHE WILD-TYPE" "BCHE WILD-TYPE" 
    TCGA-44-6774     TCGA-44-6775     TCGA-44-6776     TCGA-44-6777 
"BCHE WILD-TYPE" "BCHE WILD-TYPE" "BCHE WILD-TYPE" "BCHE WILD-TYPE" 
    TCGA-44-6778     TCGA-44-6779     TCGA-49-4486     TCGA-49-4487 
"BCHE WILD-TYPE" "BCHE WILD-TYPE" "BCHE WILD-TYPE" "BCHE WILD-TYPE" 
    TCGA-49-4488     TCGA-49-4490     TCGA-49-4494     TCGA-49-4501 
"BCHE WILD-TYPE" "BCHE WILD-TYPE" "BCHE WILD-TYPE" "BCHE WILD-TYPE" 
    TCGA-49-4505     TCGA-49-4506     TCGA-49-4507     TCGA-49-4510 
"BCHE WILD-TYPE" "BCHE WILD-TYPE" "BCHE WILD-TYPE" "BCHE WILD-TYPE" 
    TCGA-49-4512     TCGA-49-4514     TCGA-49-6742     TCGA-49-6743 
"BCHE WILD-TYPE" "BCHE WILD-TYPE" "BCHE WILD-TYPE" "BCHE WILD-TYPE" 
    TCGA-49-6744     TCGA-49-6745     TCGA-50-5044     TCGA-50-5045 
"BCHE WILD-TYPE" "BCHE WILD-TYPE" "BCHE WILD-TYPE" "BCHE WILD-TYPE" 
    TCGA-50-5049     TCGA-50-5051     TCGA-50-5055     TCGA-50-5066 
"BCHE WILD-TYPE" "BCHE WILD-TYPE" "BCHE WILD-TYPE" "BCHE WILD-TYPE" 
    TCGA-50-5068     TCGA-50-5072     TCGA-50-5930     TCGA-50-5931 
"BCHE WILD-TYPE" "BCHE WILD-TYPE" "BCHE WILD-TYPE"   "BCHE MUTATED" 
    TCGA-50-5932     TCGA-50-5933     TCGA-50-5935     TCGA-50-5936 
"BCHE WILD-TYPE" "BCHE WILD-TYPE" "BCHE WILD-TYPE" "BCHE WILD-TYPE" 
    TCGA-50-5939     TCGA-50-5941     TCGA-50-5942     TCGA-50-5944 
"BCHE WILD-TYPE" "BCHE WILD-TYPE" "BCHE WILD-TYPE" "BCHE WILD-TYPE" 
    TCGA-50-5946     TCGA-50-6590     TCGA-50-6591     TCGA-50-6592 
"BCHE WILD-TYPE"   "BCHE MUTATED" "BCHE WILD-TYPE" "BCHE WILD-TYPE" 
    TCGA-50-6593     TCGA-50-6594     TCGA-50-6595     TCGA-50-6597 
"BCHE WILD-TYPE" "BCHE WILD-TYPE" "BCHE WILD-TYPE" "BCHE WILD-TYPE" 
    TCGA-55-1592     TCGA-55-1594     TCGA-55-1595     TCGA-55-1596 
"BCHE WILD-TYPE" "BCHE WILD-TYPE" "BCHE WILD-TYPE" "BCHE WILD-TYPE" 
    TCGA-55-5899     TCGA-55-6543     TCGA-55-6642     TCGA-55-6712 
"BCHE WILD-TYPE" "BCHE WILD-TYPE" "BCHE WILD-TYPE" "BCHE WILD-TYPE" 
    TCGA-64-1676     TCGA-64-1677     TCGA-64-1678     TCGA-64-1680 
"BCHE WILD-TYPE" "BCHE WILD-TYPE" "BCHE WILD-TYPE" "BCHE WILD-TYPE" 
    TCGA-64-5774     TCGA-64-5775     TCGA-64-5778     TCGA-64-5779 
"BCHE WILD-TYPE" "BCHE WILD-TYPE" "BCHE WILD-TYPE" "BCHE WILD-TYPE" 
    TCGA-64-5781     TCGA-64-5815     TCGA-67-3770     TCGA-67-3771 
  "BCHE MUTATED"   "BCHE MUTATED" "BCHE WILD-TYPE" "BCHE WILD-TYPE" 
    TCGA-67-3772     TCGA-67-3773     TCGA-67-3774     TCGA-67-6215 
"BCHE WILD-TYPE" "BCHE WILD-TYPE" "BCHE WILD-TYPE" "BCHE WILD-TYPE" 
    TCGA-67-6216     TCGA-67-6217     TCGA-71-6725     TCGA-73-4658 
"BCHE WILD-TYPE" "BCHE WILD-TYPE" "BCHE WILD-TYPE" "BCHE WILD-TYPE" 
    TCGA-73-4659     TCGA-73-4662     TCGA-73-4666     TCGA-73-4668 
"BCHE WILD-TYPE" "BCHE WILD-TYPE" "BCHE WILD-TYPE" "BCHE WILD-TYPE" 
    TCGA-73-4670     TCGA-73-4675     TCGA-73-4676     TCGA-73-4677 
"BCHE WILD-TYPE" "BCHE WILD-TYPE" "BCHE WILD-TYPE" "BCHE WILD-TYPE" 
    TCGA-91-6828     TCGA-91-6829     TCGA-91-6831     TCGA-91-6835 
"BCHE WILD-TYPE" "BCHE WILD-TYPE" "BCHE WILD-TYPE" "BCHE WILD-TYPE" 
    TCGA-91-6836 
"BCHE WILD-TYPE" 
    TCGA-05-4249     TCGA-05-4250     TCGA-05-4382     TCGA-05-4384 
"BCHE WILD-TYPE" "BCHE WILD-TYPE" "BCHE WILD-TYPE" "BCHE WILD-TYPE" 
    TCGA-05-4390     TCGA-05-4396     TCGA-05-4397     TCGA-05-4398 
"BCHE WILD-TYPE" "BCHE WILD-TYPE" "BCHE WILD-TYPE" "BCHE WILD-TYPE" 
    TCGA-05-4402     TCGA-05-4405     TCGA-05-4415     TCGA-05-4417 
"BCHE WILD-TYPE" "BCHE WILD-TYPE" "BCHE WILD-TYPE" "BCHE WILD-TYPE" 
    TCGA-05-4418     TCGA-05-4420     TCGA-05-4424     TCGA-05-4426 
"BCHE WILD-TYPE" "BCHE WILD-TYPE" "BCHE WILD-TYPE" "BCHE WILD-TYPE" 
    TCGA-05-4427     TCGA-05-4430     TCGA-05-4432     TCGA-05-4433 
"BCHE WILD-TYPE" "BCHE WILD-TYPE" "BCHE WILD-TYPE" "BCHE WILD-TYPE" 
    TCGA-05-4434     TCGA-05-5420     TCGA-05-5423     TCGA-05-5425 
"BCHE WILD-TYPE" "BCHE WILD-TYPE" "BCHE WILD-TYPE" "BCHE WILD-TYPE" 
    TCGA-05-5429     TCGA-05-5715     TCGA-35-3615     TCGA-35-4122 
"BCHE WILD-TYPE" "BCHE WILD-TYPE" "BCHE WILD-TYPE" "BCHE WILD-TYPE" 
    TCGA-35-4123     TCGA-35-5375     TCGA-38-4625     TCGA-38-4626 
"BCHE WILD-TYPE" "BCHE WILD-TYPE" "BCHE WILD-TYPE" "BCHE WILD-TYPE" 
    TCGA-38-4627     TCGA-38-4628     TCGA-38-4629     TCGA-38-4630 
"BCHE WILD-TYPE" "BCHE WILD-TYPE" "BCHE WILD-TYPE" "BCHE WILD-TYPE" 
    TCGA-38-4631     TCGA-38-4632     TCGA-38-6178     TCGA-44-2655 
"BCHE WILD-TYPE" "BCHE WILD-TYPE" "BCHE WILD-TYPE" "BCHE WILD-TYPE" 
    TCGA-44-2656     TCGA-44-2657     TCGA-44-2659     TCGA-44-2661 
"BCHE WILD-TYPE" "BCHE WILD-TYPE" "BCHE WILD-TYPE" "BCHE WILD-TYPE" 
    TCGA-44-2662     TCGA-44-2665     TCGA-44-2666     TCGA-44-2668 
  "BCHE MUTATED" "BCHE WILD-TYPE" "BCHE WILD-TYPE"   "BCHE MUTATED" 
    TCGA-44-3396     TCGA-44-3398     TCGA-44-3918     TCGA-44-3919 
"BCHE WILD-TYPE"   "BCHE MUTATED" "BCHE WILD-TYPE" "BCHE WILD-TYPE" 
    TCGA-44-4112     TCGA-44-5643     TCGA-44-5645     TCGA-44-6144 
"BCHE WILD-TYPE" "BCHE WILD-TYPE" "BCHE WILD-TYPE" "BCHE WILD-TYPE" 
    TCGA-44-6145     TCGA-44-6146     TCGA-44-6147     TCGA-44-6148 
"BCHE WILD-TYPE" "BCHE WILD-TYPE" "BCHE WILD-TYPE" "BCHE WILD-TYPE" 
    TCGA-44-6774     TCGA-44-6775     TCGA-44-6776     TCGA-44-6777 
"BCHE WILD-TYPE" "BCHE WILD-TYPE" "BCHE WILD-TYPE" "BCHE WILD-TYPE" 
    TCGA-44-6778     TCGA-44-6779     TCGA-49-4486     TCGA-49-4487 
"BCHE WILD-TYPE" "BCHE WILD-TYPE" "BCHE WILD-TYPE" "BCHE WILD-TYPE" 
    TCGA-49-4488     TCGA-49-4490     TCGA-49-4494     TCGA-49-4501 
"BCHE WILD-TYPE" "BCHE WILD-TYPE" "BCHE WILD-TYPE" "BCHE WILD-TYPE" 
    TCGA-49-4505     TCGA-49-4506     TCGA-49-4507     TCGA-49-4510 
"BCHE WILD-TYPE" "BCHE WILD-TYPE" "BCHE WILD-TYPE" "BCHE WILD-TYPE" 
    TCGA-49-4512     TCGA-49-4514     TCGA-49-6742     TCGA-49-6743 
"BCHE WILD-TYPE" "BCHE WILD-TYPE" "BCHE WILD-TYPE" "BCHE WILD-TYPE" 
    TCGA-49-6744     TCGA-49-6745     TCGA-50-5044     TCGA-50-5045 
"BCHE WILD-TYPE" "BCHE WILD-TYPE" "BCHE WILD-TYPE" "BCHE WILD-TYPE" 
    TCGA-50-5049     TCGA-50-5051     TCGA-50-5055     TCGA-50-5066 
"BCHE WILD-TYPE" "BCHE WILD-TYPE" "BCHE WILD-TYPE" "BCHE WILD-TYPE" 
    TCGA-50-5068     TCGA-50-5072     TCGA-50-5930     TCGA-50-5931 
"BCHE WILD-TYPE" "BCHE WILD-TYPE" "BCHE WILD-TYPE"   "BCHE MUTATED" 
    TCGA-50-5932     TCGA-50-5933     TCGA-50-5935     TCGA-50-5936 
"BCHE WILD-TYPE" "BCHE WILD-TYPE" "BCHE WILD-TYPE" "BCHE WILD-TYPE" 
    TCGA-50-5939     TCGA-50-5941     TCGA-50-5942     TCGA-50-5944 
"BCHE WILD-TYPE" "BCHE WILD-TYPE" "BCHE WILD-TYPE" "BCHE WILD-TYPE" 
    TCGA-50-5946     TCGA-50-6590     TCGA-50-6591     TCGA-50-6592 
"BCHE WILD-TYPE"   "BCHE MUTATED" "BCHE WILD-TYPE" "BCHE WILD-TYPE" 
    TCGA-50-6593     TCGA-50-6594     TCGA-50-6595     TCGA-50-6597 
"BCHE WILD-TYPE" "BCHE WILD-TYPE" "BCHE WILD-TYPE" "BCHE WILD-TYPE" 
    TCGA-55-1592     TCGA-55-1594     TCGA-55-1595     TCGA-55-1596 
"BCHE WILD-TYPE" "BCHE WILD-TYPE" "BCHE WILD-TYPE" "BCHE WILD-TYPE" 
    TCGA-55-5899     TCGA-55-6543     TCGA-55-6642     TCGA-55-6712 
"BCHE WILD-TYPE" "BCHE WILD-TYPE" "BCHE WILD-TYPE" "BCHE WILD-TYPE" 
    TCGA-64-1676     TCGA-64-1677     TCGA-64-1678     TCGA-64-1680 
"BCHE WILD-TYPE" "BCHE WILD-TYPE" "BCHE WILD-TYPE" "BCHE WILD-TYPE" 
    TCGA-64-5774     TCGA-64-5775     TCGA-64-5778     TCGA-64-5779 
"BCHE WILD-TYPE" "BCHE WILD-TYPE" "BCHE WILD-TYPE" "BCHE WILD-TYPE" 
    TCGA-64-5781     TCGA-64-5815     TCGA-67-3770     TCGA-67-3771 
  "BCHE MUTATED"   "BCHE MUTATED" "BCHE WILD-TYPE" "BCHE WILD-TYPE" 
    TCGA-67-3772     TCGA-67-3773     TCGA-67-3774     TCGA-67-6215 
"BCHE WILD-TYPE" "BCHE WILD-TYPE" "BCHE WILD-TYPE" "BCHE WILD-TYPE" 
    TCGA-67-6216     TCGA-67-6217     TCGA-71-6725     TCGA-73-4658 
"BCHE WILD-TYPE" "BCHE WILD-TYPE" "BCHE WILD-TYPE" "BCHE WILD-TYPE" 
    TCGA-73-4659     TCGA-73-4662     TCGA-73-4666     TCGA-73-4668 
"BCHE WILD-TYPE" "BCHE WILD-TYPE" "BCHE WILD-TYPE" "BCHE WILD-TYPE" 
    TCGA-73-4670     TCGA-73-4675     TCGA-73-4676     TCGA-73-4677 
"BCHE WILD-TYPE" "BCHE WILD-TYPE" "BCHE WILD-TYPE" "BCHE WILD-TYPE" 
    TCGA-91-6828     TCGA-91-6829     TCGA-91-6831     TCGA-91-6835 
"BCHE WILD-TYPE" "BCHE WILD-TYPE" "BCHE WILD-TYPE" "BCHE WILD-TYPE" 
    TCGA-91-6836 
"BCHE WILD-TYPE" 
    TCGA-05-4249     TCGA-05-4250     TCGA-05-4382     TCGA-05-4384 
"BCHE WILD-TYPE" "BCHE WILD-TYPE" "BCHE WILD-TYPE" "BCHE WILD-TYPE" 
    TCGA-05-4390     TCGA-05-4396     TCGA-05-4397     TCGA-05-4398 
"BCHE WILD-TYPE" "BCHE WILD-TYPE" "BCHE WILD-TYPE" "BCHE WILD-TYPE" 
    TCGA-05-4402     TCGA-05-4405     TCGA-05-4415     TCGA-05-4417 
"BCHE WILD-TYPE" "BCHE WILD-TYPE" "BCHE WILD-TYPE" "BCHE WILD-TYPE" 
    TCGA-05-4418     TCGA-05-4420     TCGA-05-4424     TCGA-05-4426 
"BCHE WILD-TYPE" "BCHE WILD-TYPE" "BCHE WILD-TYPE" "BCHE WILD-TYPE" 
    TCGA-05-4427     TCGA-05-4430     TCGA-05-4432     TCGA-05-4433 
"BCHE WILD-TYPE" "BCHE WILD-TYPE" "BCHE WILD-TYPE" "BCHE WILD-TYPE" 
    TCGA-05-4434     TCGA-05-5420     TCGA-05-5423     TCGA-05-5425 
"BCHE WILD-TYPE" "BCHE WILD-TYPE" "BCHE WILD-TYPE" "BCHE WILD-TYPE" 
    TCGA-05-5429     TCGA-05-5715     TCGA-35-3615     TCGA-35-4122 
"BCHE WILD-TYPE" "BCHE WILD-TYPE" "BCHE WILD-TYPE" "BCHE WILD-TYPE" 
    TCGA-35-4123     TCGA-35-5375     TCGA-38-4625     TCGA-38-4626 
"BCHE WILD-TYPE" "BCHE WILD-TYPE" "BCHE WILD-TYPE" "BCHE WILD-TYPE" 
    TCGA-38-4627     TCGA-38-4628     TCGA-38-4629     TCGA-38-4630 
"BCHE WILD-TYPE" "BCHE WILD-TYPE" "BCHE WILD-TYPE" "BCHE WILD-TYPE" 
    TCGA-38-4631     TCGA-38-4632     TCGA-38-6178     TCGA-44-2655 
"BCHE WILD-TYPE" "BCHE WILD-TYPE" "BCHE WILD-TYPE" "BCHE WILD-TYPE" 
    TCGA-44-2656     TCGA-44-2657     TCGA-44-2659     TCGA-44-2661 
"BCHE WILD-TYPE" "BCHE WILD-TYPE" "BCHE WILD-TYPE" "BCHE WILD-TYPE" 
    TCGA-44-2662     TCGA-44-2665     TCGA-44-2666     TCGA-44-2668 
  "BCHE MUTATED" "BCHE WILD-TYPE" "BCHE WILD-TYPE"   "BCHE MUTATED" 
    TCGA-44-3396     TCGA-44-3398     TCGA-44-3918     TCGA-44-3919 
"BCHE WILD-TYPE"   "BCHE MUTATED" "BCHE WILD-TYPE" "BCHE WILD-TYPE" 
    TCGA-44-4112     TCGA-44-5643     TCGA-44-5645     TCGA-44-6144 
"BCHE WILD-TYPE" "BCHE WILD-TYPE" "BCHE WILD-TYPE" "BCHE WILD-TYPE" 
    TCGA-44-6145     TCGA-44-6146     TCGA-44-6147     TCGA-44-6148 
"BCHE WILD-TYPE" "BCHE WILD-TYPE" "BCHE WILD-TYPE" "BCHE WILD-TYPE" 
    TCGA-44-6774     TCGA-44-6775     TCGA-44-6776     TCGA-44-6777 
"BCHE WILD-TYPE" "BCHE WILD-TYPE" "BCHE WILD-TYPE" "BCHE WILD-TYPE" 
    TCGA-44-6778     TCGA-44-6779     TCGA-49-4486     TCGA-49-4487 
"BCHE WILD-TYPE" "BCHE WILD-TYPE" "BCHE WILD-TYPE" "BCHE WILD-TYPE" 
    TCGA-49-4488     TCGA-49-4490     TCGA-49-4494     TCGA-49-4501 
"BCHE WILD-TYPE" "BCHE WILD-TYPE" "BCHE WILD-TYPE" "BCHE WILD-TYPE" 
    TCGA-49-4505     TCGA-49-4506     TCGA-49-4507     TCGA-49-4510 
"BCHE WILD-TYPE" "BCHE WILD-TYPE" "BCHE WILD-TYPE" "BCHE WILD-TYPE" 
    TCGA-49-4512     TCGA-49-4514     TCGA-49-6742     TCGA-49-6743 
"BCHE WILD-TYPE" "BCHE WILD-TYPE" "BCHE WILD-TYPE" "BCHE WILD-TYPE" 
    TCGA-49-6744     TCGA-49-6745     TCGA-50-5044     TCGA-50-5045 
"BCHE WILD-TYPE" "BCHE WILD-TYPE" "BCHE WILD-TYPE" "BCHE WILD-TYPE" 
    TCGA-50-5049     TCGA-50-5051     TCGA-50-5055     TCGA-50-5066 
"BCHE WILD-TYPE" "BCHE WILD-TYPE" "BCHE WILD-TYPE" "BCHE WILD-TYPE" 
    TCGA-50-5068     TCGA-50-5072     TCGA-50-5930     TCGA-50-5931 
"BCHE WILD-TYPE" "BCHE WILD-TYPE" "BCHE WILD-TYPE"   "BCHE MUTATED" 
    TCGA-50-5932     TCGA-50-5933     TCGA-50-5935     TCGA-50-5936 
"BCHE WILD-TYPE" "BCHE WILD-TYPE" "BCHE WILD-TYPE" "BCHE WILD-TYPE" 
    TCGA-50-5939     TCGA-50-5941     TCGA-50-5942     TCGA-50-5944 
"BCHE WILD-TYPE" "BCHE WILD-TYPE" "BCHE WILD-TYPE" "BCHE WILD-TYPE" 
    TCGA-50-5946     TCGA-50-6590     TCGA-50-6591     TCGA-50-6592 
"BCHE WILD-TYPE"   "BCHE MUTATED" "BCHE WILD-TYPE" "BCHE WILD-TYPE" 
    TCGA-50-6593     TCGA-50-6594     TCGA-50-6595     TCGA-50-6597 
"BCHE WILD-TYPE" "BCHE WILD-TYPE" "BCHE WILD-TYPE" "BCHE WILD-TYPE" 
    TCGA-55-1592     TCGA-55-1594     TCGA-55-1595     TCGA-55-1596 
"BCHE WILD-TYPE" "BCHE WILD-TYPE" "BCHE WILD-TYPE" "BCHE WILD-TYPE" 
    TCGA-55-5899     TCGA-55-6543     TCGA-55-6642     TCGA-55-6712 
"BCHE WILD-TYPE" "BCHE WILD-TYPE" "BCHE WILD-TYPE" "BCHE WILD-TYPE" 
    TCGA-64-1676     TCGA-64-1677     TCGA-64-1678     TCGA-64-1680 
"BCHE WILD-TYPE" "BCHE WILD-TYPE" "BCHE WILD-TYPE" "BCHE WILD-TYPE" 
    TCGA-64-5774     TCGA-64-5775     TCGA-64-5778     TCGA-64-5779 
"BCHE WILD-TYPE" "BCHE WILD-TYPE" "BCHE WILD-TYPE" "BCHE WILD-TYPE" 
    TCGA-64-5781     TCGA-64-5815     TCGA-67-3770     TCGA-67-3771 
  "BCHE MUTATED"   "BCHE MUTATED" "BCHE WILD-TYPE" "BCHE WILD-TYPE" 
    TCGA-67-3772     TCGA-67-3773     TCGA-67-3774     TCGA-67-6215 
"BCHE WILD-TYPE" "BCHE WILD-TYPE" "BCHE WILD-TYPE" "BCHE WILD-TYPE" 
    TCGA-67-6216     TCGA-67-6217     TCGA-71-6725     TCGA-73-4658 
"BCHE WILD-TYPE" "BCHE WILD-TYPE" "BCHE WILD-TYPE" "BCHE WILD-TYPE" 
    TCGA-73-4659     TCGA-73-4662     TCGA-73-4666     TCGA-73-4668 
"BCHE WILD-TYPE" "BCHE WILD-TYPE" "BCHE WILD-TYPE" "BCHE WILD-TYPE" 
    TCGA-73-4670     TCGA-73-4675     TCGA-73-4676     TCGA-73-4677 
"BCHE WILD-TYPE" "BCHE WILD-TYPE" "BCHE WILD-TYPE" "BCHE WILD-TYPE" 
    TCGA-91-6828     TCGA-91-6829     TCGA-91-6831     TCGA-91-6835 
"BCHE WILD-TYPE" "BCHE WILD-TYPE" "BCHE WILD-TYPE" "BCHE WILD-TYPE" 
    TCGA-91-6836 
"BCHE WILD-TYPE" 
[1] "hr=" "1"  
D111V2, continuous
D111V3, binary
[1] "tbl2"
                cls
clus             [,1] [,2]
  BCHE MUTATED      4    5
  BCHE WILD-TYPE   89   74
        clus
vv       BCHE MUTATED BCHE WILD-TYPE
  FEMALE            4             89
  MALE              5             74
D111V4, continuous
D111V5, multiclass
D111V6, multiclass
    clus
vv   BCHE MUTATED BCHE WILD-TYPE
  T1            1             40
  T2            7            101
  T3            1             13
  T4            0              8
D111V7, multiclass
       clus
vv      BCHE MUTATED BCHE WILD-TYPE
  N0               7             88
  N1               1             36
  N2+N3            1             34
D111V8, multiclass
    clus
vv   BCHE MUTATED BCHE WILD-TYPE
  M0            8            129
  M1            1              8
  MX            0             22
D111V9, multiclass
     clus
vv    BCHE MUTATED BCHE WILD-TYPE
  I              7             81
  II             1             32
  III            0             39
  IV             1              8
D111V10, binary
[1] "tbl2"
                cls
clus             [,1] [,2]
  BCHE MUTATED      0    9
  BCHE WILD-TYPE   16  147
     clus
vv    BCHE MUTATED BCHE WILD-TYPE
  NO             0             16
  YES            9            147
D111V11, continuous
D111V12, continuous
D111V13, multiclass
                                             clus
vv                                            BCHE MUTATED BCHE WILD-TYPE
  CURRENT REFORMED SMOKER FOR < OR = 15 YEARS            6             56
  CURRENT REFORMED SMOKER FOR > 15 YEARS                 2             44
  CURRENT SMOKER                                         0             28
  LIFELONG NON-SMOKER                                    0             24
D111V14, continuous

Clustering(112) Variable = GPR101 MUTATION ANALYSIS
D112V1, survival
                  sevent
clus2               0  1
  GPR101 MUTATED    5  2
  GPR101 WILD-TYPE 94 48
  GPR101 MUTATED GPR101 WILD-TYPE 
               7              142 
  GPR101 MUTATED GPR101 WILD-TYPE 
               2               48 
$`GPR101 MUTATED`
TCGA-05-4390 TCGA-05-4417 TCGA-05-4424 TCGA-05-4427 TCGA-44-6776 TCGA-44-6777 
       37.02        14.93        30.02        26.01        63.72        32.45 
TCGA-55-1592 
       23.05 

$`GPR101 WILD-TYPE`
TCGA-05-4249 TCGA-05-4250 TCGA-05-4382 TCGA-05-4384 TCGA-05-4396 TCGA-05-4397 
       38.07         3.98        19.92        14.01         9.96        24.03 
TCGA-05-4398 TCGA-05-4402 TCGA-05-4405 TCGA-05-4415 TCGA-05-4418 TCGA-05-4420 
       47.05         8.02        20.05         2.96         8.98        29.95 
TCGA-05-4426 TCGA-05-4430 TCGA-05-4432 TCGA-05-4433 TCGA-05-4434 TCGA-05-5420 
       26.01        25.02        25.02        24.00        15.02         1.02 
TCGA-05-5423 TCGA-05-5425 TCGA-05-5429 TCGA-05-5715 TCGA-35-3615 TCGA-35-4122 
        4.96         2.96         0.99         2.04         0.46         7.36 
TCGA-35-4123 TCGA-35-5375 TCGA-38-4625 TCGA-38-4626 TCGA-38-4627 TCGA-38-4628 
        5.95         8.68        47.61        85.32        37.71        49.02 
TCGA-38-4629 TCGA-38-4630 TCGA-38-4631 TCGA-38-4632 TCGA-38-6178 TCGA-44-2655 
       28.37        35.28        11.64        44.61         5.19        18.87 
TCGA-44-2656 TCGA-44-2657 TCGA-44-2659 TCGA-44-2661 TCGA-44-2662 TCGA-44-2665 
       19.10        13.15        17.39         3.39        15.78        13.15 
TCGA-44-2666 TCGA-44-2668 TCGA-44-3396 TCGA-44-3398 TCGA-44-3918 TCGA-44-3919 
        3.19         8.09        10.22         8.32         6.44         6.21 
TCGA-44-4112 TCGA-44-5643 TCGA-44-5645 TCGA-44-6144 TCGA-44-6145 TCGA-44-6146 
        4.60         3.48         6.84         0.30         3.35         9.93 
TCGA-44-6147 TCGA-44-6148 TCGA-44-6774 TCGA-44-6775 TCGA-44-6778 TCGA-44-6779 
        7.76         3.12         5.42         2.70        36.49        16.41 
TCGA-49-4486 TCGA-49-4487 TCGA-49-4488 TCGA-49-4490 TCGA-49-4494 TCGA-49-4501 
       76.21        28.11        28.57        12.66        35.54        46.72 
TCGA-49-4505 TCGA-49-4506 TCGA-49-4507 TCGA-49-4510 TCGA-49-4512 TCGA-49-4514 
       14.07        32.84         8.81        29.46        29.75        43.20 
TCGA-49-6742 TCGA-49-6743 TCGA-49-6744 TCGA-49-6745 TCGA-50-5044 TCGA-50-5045 
       15.02        12.13        12.99         4.93        20.48        71.47 
TCGA-50-5049 TCGA-50-5051 TCGA-50-5055 TCGA-50-5066 TCGA-50-5068 TCGA-50-5072 
       48.82        14.96        25.81         9.76        49.28         8.05 
TCGA-50-5930 TCGA-50-5931 TCGA-50-5932 TCGA-50-5933 TCGA-50-5935 TCGA-50-5936 
        9.27         8.78        35.87        77.88        21.47         8.45 
TCGA-50-5939 TCGA-50-5941 TCGA-50-5942 TCGA-50-5944 TCGA-50-5946 TCGA-50-6590 
       15.12         9.37         4.44        12.26        11.47        42.31 
TCGA-50-6591 TCGA-50-6592 TCGA-50-6593 TCGA-50-6594 TCGA-50-6595 TCGA-50-6597 
        3.88        25.51        11.05        12.16         6.21        33.37 
TCGA-55-1594 TCGA-55-1595 TCGA-55-1596 TCGA-55-5899 TCGA-55-6543 TCGA-55-6642 
       38.73        48.62        45.17         2.86         0.07        32.61 
TCGA-55-6712 TCGA-64-1676 TCGA-64-1677 TCGA-64-1678 TCGA-64-1680 TCGA-64-5774 
        0.79        56.81        20.65        39.09        37.02        83.84 
TCGA-64-5775 TCGA-64-5778 TCGA-64-5779 TCGA-64-5781 TCGA-64-5815 TCGA-67-3770 
        0.10        30.44        16.67        39.52         7.33         0.99 
TCGA-67-3771 TCGA-67-3772 TCGA-67-3773 TCGA-67-3774 TCGA-67-6215 TCGA-67-6216 
        1.97         0.59         2.04         0.59         0.89         0.69 
TCGA-67-6217 TCGA-71-6725 TCGA-73-4658 TCGA-73-4659 TCGA-73-4662 TCGA-73-4666 
       13.87         2.01        52.57        23.38        29.95        20.28 
TCGA-73-4668 TCGA-73-4670 TCGA-73-4675 TCGA-73-4676 TCGA-73-4677 TCGA-91-6828 
       15.35         0.46         1.32         4.01         1.25         1.22 
TCGA-91-6829 TCGA-91-6831 TCGA-91-6835 TCGA-91-6836 
       41.33         1.28         1.15         0.36 

  GPR101 MUTATED GPR101 WILD-TYPE 
           14.93             0.07 
  GPR101 MUTATED GPR101 WILD-TYPE 
           63.72            85.32 
  GPR101 MUTATED GPR101 WILD-TYPE 
          30.020           12.825 
[1] "14.9 - 63.7 (30.0)" "0.1 - 85.3 (12.8)" 
      TCGA-05-4249       TCGA-05-4250       TCGA-05-4382       TCGA-05-4384 
"GPR101 WILD-TYPE" "GPR101 WILD-TYPE" "GPR101 WILD-TYPE" "GPR101 WILD-TYPE" 
      TCGA-05-4390       TCGA-05-4396       TCGA-05-4397       TCGA-05-4398 
  "GPR101 MUTATED" "GPR101 WILD-TYPE" "GPR101 WILD-TYPE" "GPR101 WILD-TYPE" 
      TCGA-05-4402       TCGA-05-4405       TCGA-05-4415       TCGA-05-4417 
"GPR101 WILD-TYPE" "GPR101 WILD-TYPE" "GPR101 WILD-TYPE"   "GPR101 MUTATED" 
      TCGA-05-4418       TCGA-05-4420       TCGA-05-4424       TCGA-05-4426 
"GPR101 WILD-TYPE" "GPR101 WILD-TYPE"   "GPR101 MUTATED" "GPR101 WILD-TYPE" 
      TCGA-05-4427       TCGA-05-4430       TCGA-05-4432       TCGA-05-4433 
  "GPR101 MUTATED" "GPR101 WILD-TYPE" "GPR101 WILD-TYPE" "GPR101 WILD-TYPE" 
      TCGA-05-4434       TCGA-05-5420       TCGA-05-5423       TCGA-05-5425 
"GPR101 WILD-TYPE" "GPR101 WILD-TYPE" "GPR101 WILD-TYPE" "GPR101 WILD-TYPE" 
      TCGA-05-5429       TCGA-05-5715       TCGA-35-3615       TCGA-35-4122 
"GPR101 WILD-TYPE" "GPR101 WILD-TYPE" "GPR101 WILD-TYPE" "GPR101 WILD-TYPE" 
      TCGA-35-4123       TCGA-35-5375       TCGA-38-4625       TCGA-38-4626 
"GPR101 WILD-TYPE" "GPR101 WILD-TYPE" "GPR101 WILD-TYPE" "GPR101 WILD-TYPE" 
      TCGA-38-4627       TCGA-38-4628       TCGA-38-4629       TCGA-38-4630 
"GPR101 WILD-TYPE" "GPR101 WILD-TYPE" "GPR101 WILD-TYPE" "GPR101 WILD-TYPE" 
      TCGA-38-4631       TCGA-38-4632       TCGA-38-6178       TCGA-44-2655 
"GPR101 WILD-TYPE" "GPR101 WILD-TYPE" "GPR101 WILD-TYPE" "GPR101 WILD-TYPE" 
      TCGA-44-2656       TCGA-44-2657       TCGA-44-2659       TCGA-44-2661 
"GPR101 WILD-TYPE" "GPR101 WILD-TYPE" "GPR101 WILD-TYPE" "GPR101 WILD-TYPE" 
      TCGA-44-2662       TCGA-44-2665       TCGA-44-2666       TCGA-44-2668 
"GPR101 WILD-TYPE" "GPR101 WILD-TYPE" "GPR101 WILD-TYPE" "GPR101 WILD-TYPE" 
      TCGA-44-3396       TCGA-44-3398       TCGA-44-3918       TCGA-44-3919 
"GPR101 WILD-TYPE" "GPR101 WILD-TYPE" "GPR101 WILD-TYPE" "GPR101 WILD-TYPE" 
      TCGA-44-4112       TCGA-44-5643       TCGA-44-5645       TCGA-44-6144 
"GPR101 WILD-TYPE" "GPR101 WILD-TYPE" "GPR101 WILD-TYPE" "GPR101 WILD-TYPE" 
      TCGA-44-6145       TCGA-44-6146       TCGA-44-6147       TCGA-44-6148 
"GPR101 WILD-TYPE" "GPR101 WILD-TYPE" "GPR101 WILD-TYPE" "GPR101 WILD-TYPE" 
      TCGA-44-6774       TCGA-44-6775       TCGA-44-6776       TCGA-44-6777 
"GPR101 WILD-TYPE" "GPR101 WILD-TYPE"   "GPR101 MUTATED"   "GPR101 MUTATED" 
      TCGA-44-6778       TCGA-44-6779       TCGA-49-4486       TCGA-49-4487 
"GPR101 WILD-TYPE" "GPR101 WILD-TYPE" "GPR101 WILD-TYPE" "GPR101 WILD-TYPE" 
      TCGA-49-4488       TCGA-49-4490       TCGA-49-4494       TCGA-49-4501 
"GPR101 WILD-TYPE" "GPR101 WILD-TYPE" "GPR101 WILD-TYPE" "GPR101 WILD-TYPE" 
      TCGA-49-4505       TCGA-49-4506       TCGA-49-4507       TCGA-49-4510 
"GPR101 WILD-TYPE" "GPR101 WILD-TYPE" "GPR101 WILD-TYPE" "GPR101 WILD-TYPE" 
      TCGA-49-4512       TCGA-49-4514       TCGA-49-6742       TCGA-49-6743 
"GPR101 WILD-TYPE" "GPR101 WILD-TYPE" "GPR101 WILD-TYPE" "GPR101 WILD-TYPE" 
      TCGA-49-6744       TCGA-49-6745       TCGA-50-5044       TCGA-50-5045 
"GPR101 WILD-TYPE" "GPR101 WILD-TYPE" "GPR101 WILD-TYPE" "GPR101 WILD-TYPE" 
      TCGA-50-5049       TCGA-50-5051       TCGA-50-5055       TCGA-50-5066 
"GPR101 WILD-TYPE" "GPR101 WILD-TYPE" "GPR101 WILD-TYPE" "GPR101 WILD-TYPE" 
      TCGA-50-5068       TCGA-50-5072       TCGA-50-5930       TCGA-50-5931 
"GPR101 WILD-TYPE" "GPR101 WILD-TYPE" "GPR101 WILD-TYPE" "GPR101 WILD-TYPE" 
      TCGA-50-5932       TCGA-50-5933       TCGA-50-5935       TCGA-50-5936 
"GPR101 WILD-TYPE" "GPR101 WILD-TYPE" "GPR101 WILD-TYPE" "GPR101 WILD-TYPE" 
      TCGA-50-5939       TCGA-50-5941       TCGA-50-5942       TCGA-50-5944 
"GPR101 WILD-TYPE" "GPR101 WILD-TYPE" "GPR101 WILD-TYPE" "GPR101 WILD-TYPE" 
      TCGA-50-5946       TCGA-50-6590       TCGA-50-6591       TCGA-50-6592 
"GPR101 WILD-TYPE" "GPR101 WILD-TYPE" "GPR101 WILD-TYPE" "GPR101 WILD-TYPE" 
      TCGA-50-6593       TCGA-50-6594       TCGA-50-6595       TCGA-50-6597 
"GPR101 WILD-TYPE" "GPR101 WILD-TYPE" "GPR101 WILD-TYPE" "GPR101 WILD-TYPE" 
      TCGA-55-1592       TCGA-55-1594       TCGA-55-1595       TCGA-55-1596 
  "GPR101 MUTATED" "GPR101 WILD-TYPE" "GPR101 WILD-TYPE" "GPR101 WILD-TYPE" 
      TCGA-55-5899       TCGA-55-6543       TCGA-55-6642       TCGA-55-6712 
"GPR101 WILD-TYPE" "GPR101 WILD-TYPE" "GPR101 WILD-TYPE" "GPR101 WILD-TYPE" 
      TCGA-64-1676       TCGA-64-1677       TCGA-64-1678       TCGA-64-1680 
"GPR101 WILD-TYPE" "GPR101 WILD-TYPE" "GPR101 WILD-TYPE" "GPR101 WILD-TYPE" 
      TCGA-64-5774       TCGA-64-5775       TCGA-64-5778       TCGA-64-5779 
"GPR101 WILD-TYPE" "GPR101 WILD-TYPE" "GPR101 WILD-TYPE" "GPR101 WILD-TYPE" 
      TCGA-64-5781       TCGA-64-5815       TCGA-67-3770       TCGA-67-3771 
"GPR101 WILD-TYPE" "GPR101 WILD-TYPE" "GPR101 WILD-TYPE" "GPR101 WILD-TYPE" 
      TCGA-67-3772       TCGA-67-3773       TCGA-67-3774       TCGA-67-6215 
"GPR101 WILD-TYPE" "GPR101 WILD-TYPE" "GPR101 WILD-TYPE" "GPR101 WILD-TYPE" 
      TCGA-67-6216       TCGA-67-6217       TCGA-71-6725       TCGA-73-4658 
"GPR101 WILD-TYPE" "GPR101 WILD-TYPE" "GPR101 WILD-TYPE" "GPR101 WILD-TYPE" 
      TCGA-73-4659       TCGA-73-4662       TCGA-73-4666       TCGA-73-4668 
"GPR101 WILD-TYPE" "GPR101 WILD-TYPE" "GPR101 WILD-TYPE" "GPR101 WILD-TYPE" 
      TCGA-73-4670       TCGA-73-4675       TCGA-73-4676       TCGA-73-4677 
"GPR101 WILD-TYPE" "GPR101 WILD-TYPE" "GPR101 WILD-TYPE" "GPR101 WILD-TYPE" 
      TCGA-91-6828       TCGA-91-6829       TCGA-91-6831       TCGA-91-6835 
"GPR101 WILD-TYPE" "GPR101 WILD-TYPE" "GPR101 WILD-TYPE" "GPR101 WILD-TYPE" 
      TCGA-91-6836 
"GPR101 WILD-TYPE" 
      TCGA-05-4249       TCGA-05-4250       TCGA-05-4382       TCGA-05-4384 
"GPR101 WILD-TYPE" "GPR101 WILD-TYPE" "GPR101 WILD-TYPE" "GPR101 WILD-TYPE" 
      TCGA-05-4390       TCGA-05-4396       TCGA-05-4397       TCGA-05-4398 
  "GPR101 MUTATED" "GPR101 WILD-TYPE" "GPR101 WILD-TYPE" "GPR101 WILD-TYPE" 
      TCGA-05-4402       TCGA-05-4405       TCGA-05-4415       TCGA-05-4417 
"GPR101 WILD-TYPE" "GPR101 WILD-TYPE" "GPR101 WILD-TYPE"   "GPR101 MUTATED" 
      TCGA-05-4418       TCGA-05-4420       TCGA-05-4424       TCGA-05-4426 
"GPR101 WILD-TYPE" "GPR101 WILD-TYPE"   "GPR101 MUTATED" "GPR101 WILD-TYPE" 
      TCGA-05-4427       TCGA-05-4430       TCGA-05-4432       TCGA-05-4433 
  "GPR101 MUTATED" "GPR101 WILD-TYPE" "GPR101 WILD-TYPE" "GPR101 WILD-TYPE" 
      TCGA-05-4434       TCGA-05-5420       TCGA-05-5423       TCGA-05-5425 
"GPR101 WILD-TYPE" "GPR101 WILD-TYPE" "GPR101 WILD-TYPE" "GPR101 WILD-TYPE" 
      TCGA-05-5429       TCGA-05-5715       TCGA-35-3615       TCGA-35-4122 
"GPR101 WILD-TYPE" "GPR101 WILD-TYPE" "GPR101 WILD-TYPE" "GPR101 WILD-TYPE" 
      TCGA-35-4123       TCGA-35-5375       TCGA-38-4625       TCGA-38-4626 
"GPR101 WILD-TYPE" "GPR101 WILD-TYPE" "GPR101 WILD-TYPE" "GPR101 WILD-TYPE" 
      TCGA-38-4627       TCGA-38-4628       TCGA-38-4629       TCGA-38-4630 
"GPR101 WILD-TYPE" "GPR101 WILD-TYPE" "GPR101 WILD-TYPE" "GPR101 WILD-TYPE" 
      TCGA-38-4631       TCGA-38-4632       TCGA-38-6178       TCGA-44-2655 
"GPR101 WILD-TYPE" "GPR101 WILD-TYPE" "GPR101 WILD-TYPE" "GPR101 WILD-TYPE" 
      TCGA-44-2656       TCGA-44-2657       TCGA-44-2659       TCGA-44-2661 
"GPR101 WILD-TYPE" "GPR101 WILD-TYPE" "GPR101 WILD-TYPE" "GPR101 WILD-TYPE" 
      TCGA-44-2662       TCGA-44-2665       TCGA-44-2666       TCGA-44-2668 
"GPR101 WILD-TYPE" "GPR101 WILD-TYPE" "GPR101 WILD-TYPE" "GPR101 WILD-TYPE" 
      TCGA-44-3396       TCGA-44-3398       TCGA-44-3918       TCGA-44-3919 
"GPR101 WILD-TYPE" "GPR101 WILD-TYPE" "GPR101 WILD-TYPE" "GPR101 WILD-TYPE" 
      TCGA-44-4112       TCGA-44-5643       TCGA-44-5645       TCGA-44-6144 
"GPR101 WILD-TYPE" "GPR101 WILD-TYPE" "GPR101 WILD-TYPE" "GPR101 WILD-TYPE" 
      TCGA-44-6145       TCGA-44-6146       TCGA-44-6147       TCGA-44-6148 
"GPR101 WILD-TYPE" "GPR101 WILD-TYPE" "GPR101 WILD-TYPE" "GPR101 WILD-TYPE" 
      TCGA-44-6774       TCGA-44-6775       TCGA-44-6776       TCGA-44-6777 
"GPR101 WILD-TYPE" "GPR101 WILD-TYPE"   "GPR101 MUTATED"   "GPR101 MUTATED" 
      TCGA-44-6778       TCGA-44-6779       TCGA-49-4486       TCGA-49-4487 
"GPR101 WILD-TYPE" "GPR101 WILD-TYPE" "GPR101 WILD-TYPE" "GPR101 WILD-TYPE" 
      TCGA-49-4488       TCGA-49-4490       TCGA-49-4494       TCGA-49-4501 
"GPR101 WILD-TYPE" "GPR101 WILD-TYPE" "GPR101 WILD-TYPE" "GPR101 WILD-TYPE" 
      TCGA-49-4505       TCGA-49-4506       TCGA-49-4507       TCGA-49-4510 
"GPR101 WILD-TYPE" "GPR101 WILD-TYPE" "GPR101 WILD-TYPE" "GPR101 WILD-TYPE" 
      TCGA-49-4512       TCGA-49-4514       TCGA-49-6742       TCGA-49-6743 
"GPR101 WILD-TYPE" "GPR101 WILD-TYPE" "GPR101 WILD-TYPE" "GPR101 WILD-TYPE" 
      TCGA-49-6744       TCGA-49-6745       TCGA-50-5044       TCGA-50-5045 
"GPR101 WILD-TYPE" "GPR101 WILD-TYPE" "GPR101 WILD-TYPE" "GPR101 WILD-TYPE" 
      TCGA-50-5049       TCGA-50-5051       TCGA-50-5055       TCGA-50-5066 
"GPR101 WILD-TYPE" "GPR101 WILD-TYPE" "GPR101 WILD-TYPE" "GPR101 WILD-TYPE" 
      TCGA-50-5068       TCGA-50-5072       TCGA-50-5930       TCGA-50-5931 
"GPR101 WILD-TYPE" "GPR101 WILD-TYPE" "GPR101 WILD-TYPE" "GPR101 WILD-TYPE" 
      TCGA-50-5932       TCGA-50-5933       TCGA-50-5935       TCGA-50-5936 
"GPR101 WILD-TYPE" "GPR101 WILD-TYPE" "GPR101 WILD-TYPE" "GPR101 WILD-TYPE" 
      TCGA-50-5939       TCGA-50-5941       TCGA-50-5942       TCGA-50-5944 
"GPR101 WILD-TYPE" "GPR101 WILD-TYPE" "GPR101 WILD-TYPE" "GPR101 WILD-TYPE" 
      TCGA-50-5946       TCGA-50-6590       TCGA-50-6591       TCGA-50-6592 
"GPR101 WILD-TYPE" "GPR101 WILD-TYPE" "GPR101 WILD-TYPE" "GPR101 WILD-TYPE" 
      TCGA-50-6593       TCGA-50-6594       TCGA-50-6595       TCGA-50-6597 
"GPR101 WILD-TYPE" "GPR101 WILD-TYPE" "GPR101 WILD-TYPE" "GPR101 WILD-TYPE" 
      TCGA-55-1592       TCGA-55-1594       TCGA-55-1595       TCGA-55-1596 
  "GPR101 MUTATED" "GPR101 WILD-TYPE" "GPR101 WILD-TYPE" "GPR101 WILD-TYPE" 
      TCGA-55-5899       TCGA-55-6543       TCGA-55-6642       TCGA-55-6712 
"GPR101 WILD-TYPE" "GPR101 WILD-TYPE" "GPR101 WILD-TYPE" "GPR101 WILD-TYPE" 
      TCGA-64-1676       TCGA-64-1677       TCGA-64-1678       TCGA-64-1680 
"GPR101 WILD-TYPE" "GPR101 WILD-TYPE" "GPR101 WILD-TYPE" "GPR101 WILD-TYPE" 
      TCGA-64-5774       TCGA-64-5775       TCGA-64-5778       TCGA-64-5779 
"GPR101 WILD-TYPE" "GPR101 WILD-TYPE" "GPR101 WILD-TYPE" "GPR101 WILD-TYPE" 
      TCGA-64-5781       TCGA-64-5815       TCGA-67-3770       TCGA-67-3771 
"GPR101 WILD-TYPE" "GPR101 WILD-TYPE" "GPR101 WILD-TYPE" "GPR101 WILD-TYPE" 
      TCGA-67-3772       TCGA-67-3773       TCGA-67-3774       TCGA-67-6215 
"GPR101 WILD-TYPE" "GPR101 WILD-TYPE" "GPR101 WILD-TYPE" "GPR101 WILD-TYPE" 
      TCGA-67-6216       TCGA-67-6217       TCGA-71-6725       TCGA-73-4658 
"GPR101 WILD-TYPE" "GPR101 WILD-TYPE" "GPR101 WILD-TYPE" "GPR101 WILD-TYPE" 
      TCGA-73-4659       TCGA-73-4662       TCGA-73-4666       TCGA-73-4668 
"GPR101 WILD-TYPE" "GPR101 WILD-TYPE" "GPR101 WILD-TYPE" "GPR101 WILD-TYPE" 
      TCGA-73-4670       TCGA-73-4675       TCGA-73-4676       TCGA-73-4677 
"GPR101 WILD-TYPE" "GPR101 WILD-TYPE" "GPR101 WILD-TYPE" "GPR101 WILD-TYPE" 
      TCGA-91-6828       TCGA-91-6829       TCGA-91-6831       TCGA-91-6835 
"GPR101 WILD-TYPE" "GPR101 WILD-TYPE" "GPR101 WILD-TYPE" "GPR101 WILD-TYPE" 
      TCGA-91-6836 
"GPR101 WILD-TYPE" 
      TCGA-05-4249       TCGA-05-4250       TCGA-05-4382       TCGA-05-4384 
"GPR101 WILD-TYPE" "GPR101 WILD-TYPE" "GPR101 WILD-TYPE" "GPR101 WILD-TYPE" 
      TCGA-05-4390       TCGA-05-4396       TCGA-05-4397       TCGA-05-4398 
  "GPR101 MUTATED" "GPR101 WILD-TYPE" "GPR101 WILD-TYPE" "GPR101 WILD-TYPE" 
      TCGA-05-4402       TCGA-05-4405       TCGA-05-4415       TCGA-05-4417 
"GPR101 WILD-TYPE" "GPR101 WILD-TYPE" "GPR101 WILD-TYPE"   "GPR101 MUTATED" 
      TCGA-05-4418       TCGA-05-4420       TCGA-05-4424       TCGA-05-4426 
"GPR101 WILD-TYPE" "GPR101 WILD-TYPE"   "GPR101 MUTATED" "GPR101 WILD-TYPE" 
      TCGA-05-4427       TCGA-05-4430       TCGA-05-4432       TCGA-05-4433 
  "GPR101 MUTATED" "GPR101 WILD-TYPE" "GPR101 WILD-TYPE" "GPR101 WILD-TYPE" 
      TCGA-05-4434       TCGA-05-5420       TCGA-05-5423       TCGA-05-5425 
"GPR101 WILD-TYPE" "GPR101 WILD-TYPE" "GPR101 WILD-TYPE" "GPR101 WILD-TYPE" 
      TCGA-05-5429       TCGA-05-5715       TCGA-35-3615       TCGA-35-4122 
"GPR101 WILD-TYPE" "GPR101 WILD-TYPE" "GPR101 WILD-TYPE" "GPR101 WILD-TYPE" 
      TCGA-35-4123       TCGA-35-5375       TCGA-38-4625       TCGA-38-4626 
"GPR101 WILD-TYPE" "GPR101 WILD-TYPE" "GPR101 WILD-TYPE" "GPR101 WILD-TYPE" 
      TCGA-38-4627       TCGA-38-4628       TCGA-38-4629       TCGA-38-4630 
"GPR101 WILD-TYPE" "GPR101 WILD-TYPE" "GPR101 WILD-TYPE" "GPR101 WILD-TYPE" 
      TCGA-38-4631       TCGA-38-4632       TCGA-38-6178       TCGA-44-2655 
"GPR101 WILD-TYPE" "GPR101 WILD-TYPE" "GPR101 WILD-TYPE" "GPR101 WILD-TYPE" 
      TCGA-44-2656       TCGA-44-2657       TCGA-44-2659       TCGA-44-2661 
"GPR101 WILD-TYPE" "GPR101 WILD-TYPE" "GPR101 WILD-TYPE" "GPR101 WILD-TYPE" 
      TCGA-44-2662       TCGA-44-2665       TCGA-44-2666       TCGA-44-2668 
"GPR101 WILD-TYPE" "GPR101 WILD-TYPE" "GPR101 WILD-TYPE" "GPR101 WILD-TYPE" 
      TCGA-44-3396       TCGA-44-3398       TCGA-44-3918       TCGA-44-3919 
"GPR101 WILD-TYPE" "GPR101 WILD-TYPE" "GPR101 WILD-TYPE" "GPR101 WILD-TYPE" 
      TCGA-44-4112       TCGA-44-5643       TCGA-44-5645       TCGA-44-6144 
"GPR101 WILD-TYPE" "GPR101 WILD-TYPE" "GPR101 WILD-TYPE" "GPR101 WILD-TYPE" 
      TCGA-44-6145       TCGA-44-6146       TCGA-44-6147       TCGA-44-6148 
"GPR101 WILD-TYPE" "GPR101 WILD-TYPE" "GPR101 WILD-TYPE" "GPR101 WILD-TYPE" 
      TCGA-44-6774       TCGA-44-6775       TCGA-44-6776       TCGA-44-6777 
"GPR101 WILD-TYPE" "GPR101 WILD-TYPE"   "GPR101 MUTATED"   "GPR101 MUTATED" 
      TCGA-44-6778       TCGA-44-6779       TCGA-49-4486       TCGA-49-4487 
"GPR101 WILD-TYPE" "GPR101 WILD-TYPE" "GPR101 WILD-TYPE" "GPR101 WILD-TYPE" 
      TCGA-49-4488       TCGA-49-4490       TCGA-49-4494       TCGA-49-4501 
"GPR101 WILD-TYPE" "GPR101 WILD-TYPE" "GPR101 WILD-TYPE" "GPR101 WILD-TYPE" 
      TCGA-49-4505       TCGA-49-4506       TCGA-49-4507       TCGA-49-4510 
"GPR101 WILD-TYPE" "GPR101 WILD-TYPE" "GPR101 WILD-TYPE" "GPR101 WILD-TYPE" 
      TCGA-49-4512       TCGA-49-4514       TCGA-49-6742       TCGA-49-6743 
"GPR101 WILD-TYPE" "GPR101 WILD-TYPE" "GPR101 WILD-TYPE" "GPR101 WILD-TYPE" 
      TCGA-49-6744       TCGA-49-6745       TCGA-50-5044       TCGA-50-5045 
"GPR101 WILD-TYPE" "GPR101 WILD-TYPE" "GPR101 WILD-TYPE" "GPR101 WILD-TYPE" 
      TCGA-50-5049       TCGA-50-5051       TCGA-50-5055       TCGA-50-5066 
"GPR101 WILD-TYPE" "GPR101 WILD-TYPE" "GPR101 WILD-TYPE" "GPR101 WILD-TYPE" 
      TCGA-50-5068       TCGA-50-5072       TCGA-50-5930       TCGA-50-5931 
"GPR101 WILD-TYPE" "GPR101 WILD-TYPE" "GPR101 WILD-TYPE" "GPR101 WILD-TYPE" 
      TCGA-50-5932       TCGA-50-5933       TCGA-50-5935       TCGA-50-5936 
"GPR101 WILD-TYPE" "GPR101 WILD-TYPE" "GPR101 WILD-TYPE" "GPR101 WILD-TYPE" 
      TCGA-50-5939       TCGA-50-5941       TCGA-50-5942       TCGA-50-5944 
"GPR101 WILD-TYPE" "GPR101 WILD-TYPE" "GPR101 WILD-TYPE" "GPR101 WILD-TYPE" 
      TCGA-50-5946       TCGA-50-6590       TCGA-50-6591       TCGA-50-6592 
"GPR101 WILD-TYPE" "GPR101 WILD-TYPE" "GPR101 WILD-TYPE" "GPR101 WILD-TYPE" 
      TCGA-50-6593       TCGA-50-6594       TCGA-50-6595       TCGA-50-6597 
"GPR101 WILD-TYPE" "GPR101 WILD-TYPE" "GPR101 WILD-TYPE" "GPR101 WILD-TYPE" 
      TCGA-55-1592       TCGA-55-1594       TCGA-55-1595       TCGA-55-1596 
  "GPR101 MUTATED" "GPR101 WILD-TYPE" "GPR101 WILD-TYPE" "GPR101 WILD-TYPE" 
      TCGA-55-5899       TCGA-55-6543       TCGA-55-6642       TCGA-55-6712 
"GPR101 WILD-TYPE" "GPR101 WILD-TYPE" "GPR101 WILD-TYPE" "GPR101 WILD-TYPE" 
      TCGA-64-1676       TCGA-64-1677       TCGA-64-1678       TCGA-64-1680 
"GPR101 WILD-TYPE" "GPR101 WILD-TYPE" "GPR101 WILD-TYPE" "GPR101 WILD-TYPE" 
      TCGA-64-5774       TCGA-64-5775       TCGA-64-5778       TCGA-64-5779 
"GPR101 WILD-TYPE" "GPR101 WILD-TYPE" "GPR101 WILD-TYPE" "GPR101 WILD-TYPE" 
      TCGA-64-5781       TCGA-64-5815       TCGA-67-3770       TCGA-67-3771 
"GPR101 WILD-TYPE" "GPR101 WILD-TYPE" "GPR101 WILD-TYPE" "GPR101 WILD-TYPE" 
      TCGA-67-3772       TCGA-67-3773       TCGA-67-3774       TCGA-67-6215 
"GPR101 WILD-TYPE" "GPR101 WILD-TYPE" "GPR101 WILD-TYPE" "GPR101 WILD-TYPE" 
      TCGA-67-6216       TCGA-67-6217       TCGA-71-6725       TCGA-73-4658 
"GPR101 WILD-TYPE" "GPR101 WILD-TYPE" "GPR101 WILD-TYPE" "GPR101 WILD-TYPE" 
      TCGA-73-4659       TCGA-73-4662       TCGA-73-4666       TCGA-73-4668 
"GPR101 WILD-TYPE" "GPR101 WILD-TYPE" "GPR101 WILD-TYPE" "GPR101 WILD-TYPE" 
      TCGA-73-4670       TCGA-73-4675       TCGA-73-4676       TCGA-73-4677 
"GPR101 WILD-TYPE" "GPR101 WILD-TYPE" "GPR101 WILD-TYPE" "GPR101 WILD-TYPE" 
      TCGA-91-6828       TCGA-91-6829       TCGA-91-6831       TCGA-91-6835 
"GPR101 WILD-TYPE" "GPR101 WILD-TYPE" "GPR101 WILD-TYPE" "GPR101 WILD-TYPE" 
      TCGA-91-6836 
"GPR101 WILD-TYPE" 
[1] "hr=" "2"  
D112V2, continuous
D112V3, binary
[1] "tbl2"
                  cls
clus               [,1] [,2]
  GPR101 MUTATED      6    3
  GPR101 WILD-TYPE   87   76
        clus
vv       GPR101 MUTATED GPR101 WILD-TYPE
  FEMALE              6               87
  MALE                3               76
D112V4, continuous
D112V5, multiclass
D112V6, multiclass
    clus
vv   GPR101 MUTATED GPR101 WILD-TYPE
  T1              1               40
  T2              6              102
  T3              2               12
  T4              0                8
D112V7, multiclass
       clus
vv      GPR101 MUTATED GPR101 WILD-TYPE
  N0                 7               88
  N1                 1               36
  N2+N3              0               35
D112V8, multiclass
    clus
vv   GPR101 MUTATED GPR101 WILD-TYPE
  M0              6              131
  M1              0                9
  MX              3               19
D112V9, multiclass
     clus
vv    GPR101 MUTATED GPR101 WILD-TYPE
  I                6               82
  II               3               30
  III              0               39
  IV               0                9
D112V10, binary
[1] "tbl2"
                  cls
clus               [,1] [,2]
  GPR101 MUTATED      1    8
  GPR101 WILD-TYPE   15  148
     clus
vv    GPR101 MUTATED GPR101 WILD-TYPE
  NO               1               15
  YES              8              148
D112V11, continuous
D112V12, continuous
D112V13, multiclass
                                             clus
vv                                            GPR101 MUTATED GPR101 WILD-TYPE
  CURRENT REFORMED SMOKER FOR < OR = 15 YEARS              8               54
  CURRENT REFORMED SMOKER FOR > 15 YEARS                   0               46
  CURRENT SMOKER                                           1               27
  LIFELONG NON-SMOKER                                      0               24
D112V14, continuous

Clustering(113) Variable = OR10K2 MUTATION ANALYSIS
D113V1, survival
                  sevent
clus2               0  1
  OR10K2 MUTATED    2  5
  OR10K2 WILD-TYPE 97 45
  OR10K2 MUTATED OR10K2 WILD-TYPE 
               7              142 
  OR10K2 MUTATED OR10K2 WILD-TYPE 
               5               45 
$`OR10K2 MUTATED`
TCGA-44-2659 TCGA-49-4487 TCGA-49-4507 TCGA-49-6743 TCGA-50-5931 TCGA-50-5933 
       17.39        28.11         8.81        12.13         8.78        77.88 
TCGA-50-6590 
       42.31 

$`OR10K2 WILD-TYPE`
TCGA-05-4249 TCGA-05-4250 TCGA-05-4382 TCGA-05-4384 TCGA-05-4390 TCGA-05-4396 
       38.07         3.98        19.92        14.01        37.02         9.96 
TCGA-05-4397 TCGA-05-4398 TCGA-05-4402 TCGA-05-4405 TCGA-05-4415 TCGA-05-4417 
       24.03        47.05         8.02        20.05         2.96        14.93 
TCGA-05-4418 TCGA-05-4420 TCGA-05-4424 TCGA-05-4426 TCGA-05-4427 TCGA-05-4430 
        8.98        29.95        30.02        26.01        26.01        25.02 
TCGA-05-4432 TCGA-05-4433 TCGA-05-4434 TCGA-05-5420 TCGA-05-5423 TCGA-05-5425 
       25.02        24.00        15.02         1.02         4.96         2.96 
TCGA-05-5429 TCGA-05-5715 TCGA-35-3615 TCGA-35-4122 TCGA-35-4123 TCGA-35-5375 
        0.99         2.04         0.46         7.36         5.95         8.68 
TCGA-38-4625 TCGA-38-4626 TCGA-38-4627 TCGA-38-4628 TCGA-38-4629 TCGA-38-4630 
       47.61        85.32        37.71        49.02        28.37        35.28 
TCGA-38-4631 TCGA-38-4632 TCGA-38-6178 TCGA-44-2655 TCGA-44-2656 TCGA-44-2657 
       11.64        44.61         5.19        18.87        19.10        13.15 
TCGA-44-2661 TCGA-44-2662 TCGA-44-2665 TCGA-44-2666 TCGA-44-2668 TCGA-44-3396 
        3.39        15.78        13.15         3.19         8.09        10.22 
TCGA-44-3398 TCGA-44-3918 TCGA-44-3919 TCGA-44-4112 TCGA-44-5643 TCGA-44-5645 
        8.32         6.44         6.21         4.60         3.48         6.84 
TCGA-44-6144 TCGA-44-6145 TCGA-44-6146 TCGA-44-6147 TCGA-44-6148 TCGA-44-6774 
        0.30         3.35         9.93         7.76         3.12         5.42 
TCGA-44-6775 TCGA-44-6776 TCGA-44-6777 TCGA-44-6778 TCGA-44-6779 TCGA-49-4486 
        2.70        63.72        32.45        36.49        16.41        76.21 
TCGA-49-4488 TCGA-49-4490 TCGA-49-4494 TCGA-49-4501 TCGA-49-4505 TCGA-49-4506 
       28.57        12.66        35.54        46.72        14.07        32.84 
TCGA-49-4510 TCGA-49-4512 TCGA-49-4514 TCGA-49-6742 TCGA-49-6744 TCGA-49-6745 
       29.46        29.75        43.20        15.02        12.99         4.93 
TCGA-50-5044 TCGA-50-5045 TCGA-50-5049 TCGA-50-5051 TCGA-50-5055 TCGA-50-5066 
       20.48        71.47        48.82        14.96        25.81         9.76 
TCGA-50-5068 TCGA-50-5072 TCGA-50-5930 TCGA-50-5932 TCGA-50-5935 TCGA-50-5936 
       49.28         8.05         9.27        35.87        21.47         8.45 
TCGA-50-5939 TCGA-50-5941 TCGA-50-5942 TCGA-50-5944 TCGA-50-5946 TCGA-50-6591 
       15.12         9.37         4.44        12.26        11.47         3.88 
TCGA-50-6592 TCGA-50-6593 TCGA-50-6594 TCGA-50-6595 TCGA-50-6597 TCGA-55-1592 
       25.51        11.05        12.16         6.21        33.37        23.05 
TCGA-55-1594 TCGA-55-1595 TCGA-55-1596 TCGA-55-5899 TCGA-55-6543 TCGA-55-6642 
       38.73        48.62        45.17         2.86         0.07        32.61 
TCGA-55-6712 TCGA-64-1676 TCGA-64-1677 TCGA-64-1678 TCGA-64-1680 TCGA-64-5774 
        0.79        56.81        20.65        39.09        37.02        83.84 
TCGA-64-5775 TCGA-64-5778 TCGA-64-5779 TCGA-64-5781 TCGA-64-5815 TCGA-67-3770 
        0.10        30.44        16.67        39.52         7.33         0.99 
TCGA-67-3771 TCGA-67-3772 TCGA-67-3773 TCGA-67-3774 TCGA-67-6215 TCGA-67-6216 
        1.97         0.59         2.04         0.59         0.89         0.69 
TCGA-67-6217 TCGA-71-6725 TCGA-73-4658 TCGA-73-4659 TCGA-73-4662 TCGA-73-4666 
       13.87         2.01        52.57        23.38        29.95        20.28 
TCGA-73-4668 TCGA-73-4670 TCGA-73-4675 TCGA-73-4676 TCGA-73-4677 TCGA-91-6828 
       15.35         0.46         1.32         4.01         1.25         1.22 
TCGA-91-6829 TCGA-91-6831 TCGA-91-6835 TCGA-91-6836 
       41.33         1.28         1.15         0.36 

  OR10K2 MUTATED OR10K2 WILD-TYPE 
            8.78             0.07 
  OR10K2 MUTATED OR10K2 WILD-TYPE 
           77.88            85.32 
  OR10K2 MUTATED OR10K2 WILD-TYPE 
           17.39            13.51 
[1] "8.8 - 77.9 (17.4)" "0.1 - 85.3 (13.5)"
      TCGA-05-4249       TCGA-05-4250       TCGA-05-4382       TCGA-05-4384 
"OR10K2 WILD-TYPE" "OR10K2 WILD-TYPE" "OR10K2 WILD-TYPE" "OR10K2 WILD-TYPE" 
      TCGA-05-4390       TCGA-05-4396       TCGA-05-4397       TCGA-05-4398 
"OR10K2 WILD-TYPE" "OR10K2 WILD-TYPE" "OR10K2 WILD-TYPE" "OR10K2 WILD-TYPE" 
      TCGA-05-4402       TCGA-05-4405       TCGA-05-4415       TCGA-05-4417 
"OR10K2 WILD-TYPE" "OR10K2 WILD-TYPE" "OR10K2 WILD-TYPE" "OR10K2 WILD-TYPE" 
      TCGA-05-4418       TCGA-05-4420       TCGA-05-4424       TCGA-05-4426 
"OR10K2 WILD-TYPE" "OR10K2 WILD-TYPE" "OR10K2 WILD-TYPE" "OR10K2 WILD-TYPE" 
      TCGA-05-4427       TCGA-05-4430       TCGA-05-4432       TCGA-05-4433 
"OR10K2 WILD-TYPE" "OR10K2 WILD-TYPE" "OR10K2 WILD-TYPE" "OR10K2 WILD-TYPE" 
      TCGA-05-4434       TCGA-05-5420       TCGA-05-5423       TCGA-05-5425 
"OR10K2 WILD-TYPE" "OR10K2 WILD-TYPE" "OR10K2 WILD-TYPE" "OR10K2 WILD-TYPE" 
      TCGA-05-5429       TCGA-05-5715       TCGA-35-3615       TCGA-35-4122 
"OR10K2 WILD-TYPE" "OR10K2 WILD-TYPE" "OR10K2 WILD-TYPE" "OR10K2 WILD-TYPE" 
      TCGA-35-4123       TCGA-35-5375       TCGA-38-4625       TCGA-38-4626 
"OR10K2 WILD-TYPE" "OR10K2 WILD-TYPE" "OR10K2 WILD-TYPE" "OR10K2 WILD-TYPE" 
      TCGA-38-4627       TCGA-38-4628       TCGA-38-4629       TCGA-38-4630 
"OR10K2 WILD-TYPE" "OR10K2 WILD-TYPE" "OR10K2 WILD-TYPE" "OR10K2 WILD-TYPE" 
      TCGA-38-4631       TCGA-38-4632       TCGA-38-6178       TCGA-44-2655 
"OR10K2 WILD-TYPE" "OR10K2 WILD-TYPE" "OR10K2 WILD-TYPE" "OR10K2 WILD-TYPE" 
      TCGA-44-2656       TCGA-44-2657       TCGA-44-2659       TCGA-44-2661 
"OR10K2 WILD-TYPE" "OR10K2 WILD-TYPE"   "OR10K2 MUTATED" "OR10K2 WILD-TYPE" 
      TCGA-44-2662       TCGA-44-2665       TCGA-44-2666       TCGA-44-2668 
"OR10K2 WILD-TYPE" "OR10K2 WILD-TYPE" "OR10K2 WILD-TYPE" "OR10K2 WILD-TYPE" 
      TCGA-44-3396       TCGA-44-3398       TCGA-44-3918       TCGA-44-3919 
"OR10K2 WILD-TYPE" "OR10K2 WILD-TYPE" "OR10K2 WILD-TYPE" "OR10K2 WILD-TYPE" 
      TCGA-44-4112       TCGA-44-5643       TCGA-44-5645       TCGA-44-6144 
"OR10K2 WILD-TYPE" "OR10K2 WILD-TYPE" "OR10K2 WILD-TYPE" "OR10K2 WILD-TYPE" 
      TCGA-44-6145       TCGA-44-6146       TCGA-44-6147       TCGA-44-6148 
"OR10K2 WILD-TYPE" "OR10K2 WILD-TYPE" "OR10K2 WILD-TYPE" "OR10K2 WILD-TYPE" 
      TCGA-44-6774       TCGA-44-6775       TCGA-44-6776       TCGA-44-6777 
"OR10K2 WILD-TYPE" "OR10K2 WILD-TYPE" "OR10K2 WILD-TYPE" "OR10K2 WILD-TYPE" 
      TCGA-44-6778       TCGA-44-6779       TCGA-49-4486       TCGA-49-4487 
"OR10K2 WILD-TYPE" "OR10K2 WILD-TYPE" "OR10K2 WILD-TYPE"   "OR10K2 MUTATED" 
      TCGA-49-4488       TCGA-49-4490       TCGA-49-4494       TCGA-49-4501 
"OR10K2 WILD-TYPE" "OR10K2 WILD-TYPE" "OR10K2 WILD-TYPE" "OR10K2 WILD-TYPE" 
      TCGA-49-4505       TCGA-49-4506       TCGA-49-4507       TCGA-49-4510 
"OR10K2 WILD-TYPE" "OR10K2 WILD-TYPE"   "OR10K2 MUTATED" "OR10K2 WILD-TYPE" 
      TCGA-49-4512       TCGA-49-4514       TCGA-49-6742       TCGA-49-6743 
"OR10K2 WILD-TYPE" "OR10K2 WILD-TYPE" "OR10K2 WILD-TYPE"   "OR10K2 MUTATED" 
      TCGA-49-6744       TCGA-49-6745       TCGA-50-5044       TCGA-50-5045 
"OR10K2 WILD-TYPE" "OR10K2 WILD-TYPE" "OR10K2 WILD-TYPE" "OR10K2 WILD-TYPE" 
      TCGA-50-5049       TCGA-50-5051       TCGA-50-5055       TCGA-50-5066 
"OR10K2 WILD-TYPE" "OR10K2 WILD-TYPE" "OR10K2 WILD-TYPE" "OR10K2 WILD-TYPE" 
      TCGA-50-5068       TCGA-50-5072       TCGA-50-5930       TCGA-50-5931 
"OR10K2 WILD-TYPE" "OR10K2 WILD-TYPE" "OR10K2 WILD-TYPE"   "OR10K2 MUTATED" 
      TCGA-50-5932       TCGA-50-5933       TCGA-50-5935       TCGA-50-5936 
"OR10K2 WILD-TYPE"   "OR10K2 MUTATED" "OR10K2 WILD-TYPE" "OR10K2 WILD-TYPE" 
      TCGA-50-5939       TCGA-50-5941       TCGA-50-5942       TCGA-50-5944 
"OR10K2 WILD-TYPE" "OR10K2 WILD-TYPE" "OR10K2 WILD-TYPE" "OR10K2 WILD-TYPE" 
      TCGA-50-5946       TCGA-50-6590       TCGA-50-6591       TCGA-50-6592 
"OR10K2 WILD-TYPE"   "OR10K2 MUTATED" "OR10K2 WILD-TYPE" "OR10K2 WILD-TYPE" 
      TCGA-50-6593       TCGA-50-6594       TCGA-50-6595       TCGA-50-6597 
"OR10K2 WILD-TYPE" "OR10K2 WILD-TYPE" "OR10K2 WILD-TYPE" "OR10K2 WILD-TYPE" 
      TCGA-55-1592       TCGA-55-1594       TCGA-55-1595       TCGA-55-1596 
"OR10K2 WILD-TYPE" "OR10K2 WILD-TYPE" "OR10K2 WILD-TYPE" "OR10K2 WILD-TYPE" 
      TCGA-55-5899       TCGA-55-6543       TCGA-55-6642       TCGA-55-6712 
"OR10K2 WILD-TYPE" "OR10K2 WILD-TYPE" "OR10K2 WILD-TYPE" "OR10K2 WILD-TYPE" 
      TCGA-64-1676       TCGA-64-1677       TCGA-64-1678       TCGA-64-1680 
"OR10K2 WILD-TYPE" "OR10K2 WILD-TYPE" "OR10K2 WILD-TYPE" "OR10K2 WILD-TYPE" 
      TCGA-64-5774       TCGA-64-5775       TCGA-64-5778       TCGA-64-5779 
"OR10K2 WILD-TYPE" "OR10K2 WILD-TYPE" "OR10K2 WILD-TYPE" "OR10K2 WILD-TYPE" 
      TCGA-64-5781       TCGA-64-5815       TCGA-67-3770       TCGA-67-3771 
"OR10K2 WILD-TYPE" "OR10K2 WILD-TYPE" "OR10K2 WILD-TYPE" "OR10K2 WILD-TYPE" 
      TCGA-67-3772       TCGA-67-3773       TCGA-67-3774       TCGA-67-6215 
"OR10K2 WILD-TYPE" "OR10K2 WILD-TYPE" "OR10K2 WILD-TYPE" "OR10K2 WILD-TYPE" 
      TCGA-67-6216       TCGA-67-6217       TCGA-71-6725       TCGA-73-4658 
"OR10K2 WILD-TYPE" "OR10K2 WILD-TYPE" "OR10K2 WILD-TYPE" "OR10K2 WILD-TYPE" 
      TCGA-73-4659       TCGA-73-4662       TCGA-73-4666       TCGA-73-4668 
"OR10K2 WILD-TYPE" "OR10K2 WILD-TYPE" "OR10K2 WILD-TYPE" "OR10K2 WILD-TYPE" 
      TCGA-73-4670       TCGA-73-4675       TCGA-73-4676       TCGA-73-4677 
"OR10K2 WILD-TYPE" "OR10K2 WILD-TYPE" "OR10K2 WILD-TYPE" "OR10K2 WILD-TYPE" 
      TCGA-91-6828       TCGA-91-6829       TCGA-91-6831       TCGA-91-6835 
"OR10K2 WILD-TYPE" "OR10K2 WILD-TYPE" "OR10K2 WILD-TYPE" "OR10K2 WILD-TYPE" 
      TCGA-91-6836 
"OR10K2 WILD-TYPE" 
      TCGA-05-4249       TCGA-05-4250       TCGA-05-4382       TCGA-05-4384 
"OR10K2 WILD-TYPE" "OR10K2 WILD-TYPE" "OR10K2 WILD-TYPE" "OR10K2 WILD-TYPE" 
      TCGA-05-4390       TCGA-05-4396       TCGA-05-4397       TCGA-05-4398 
"OR10K2 WILD-TYPE" "OR10K2 WILD-TYPE" "OR10K2 WILD-TYPE" "OR10K2 WILD-TYPE" 
      TCGA-05-4402       TCGA-05-4405       TCGA-05-4415       TCGA-05-4417 
"OR10K2 WILD-TYPE" "OR10K2 WILD-TYPE" "OR10K2 WILD-TYPE" "OR10K2 WILD-TYPE" 
      TCGA-05-4418       TCGA-05-4420       TCGA-05-4424       TCGA-05-4426 
"OR10K2 WILD-TYPE" "OR10K2 WILD-TYPE" "OR10K2 WILD-TYPE" "OR10K2 WILD-TYPE" 
      TCGA-05-4427       TCGA-05-4430       TCGA-05-4432       TCGA-05-4433 
"OR10K2 WILD-TYPE" "OR10K2 WILD-TYPE" "OR10K2 WILD-TYPE" "OR10K2 WILD-TYPE" 
      TCGA-05-4434       TCGA-05-5420       TCGA-05-5423       TCGA-05-5425 
"OR10K2 WILD-TYPE" "OR10K2 WILD-TYPE" "OR10K2 WILD-TYPE" "OR10K2 WILD-TYPE" 
      TCGA-05-5429       TCGA-05-5715       TCGA-35-3615       TCGA-35-4122 
"OR10K2 WILD-TYPE" "OR10K2 WILD-TYPE" "OR10K2 WILD-TYPE" "OR10K2 WILD-TYPE" 
      TCGA-35-4123       TCGA-35-5375       TCGA-38-4625       TCGA-38-4626 
"OR10K2 WILD-TYPE" "OR10K2 WILD-TYPE" "OR10K2 WILD-TYPE" "OR10K2 WILD-TYPE" 
      TCGA-38-4627       TCGA-38-4628       TCGA-38-4629       TCGA-38-4630 
"OR10K2 WILD-TYPE" "OR10K2 WILD-TYPE" "OR10K2 WILD-TYPE" "OR10K2 WILD-TYPE" 
      TCGA-38-4631       TCGA-38-4632       TCGA-38-6178       TCGA-44-2655 
"OR10K2 WILD-TYPE" "OR10K2 WILD-TYPE" "OR10K2 WILD-TYPE" "OR10K2 WILD-TYPE" 
      TCGA-44-2656       TCGA-44-2657       TCGA-44-2659       TCGA-44-2661 
"OR10K2 WILD-TYPE" "OR10K2 WILD-TYPE"   "OR10K2 MUTATED" "OR10K2 WILD-TYPE" 
      TCGA-44-2662       TCGA-44-2665       TCGA-44-2666       TCGA-44-2668 
"OR10K2 WILD-TYPE" "OR10K2 WILD-TYPE" "OR10K2 WILD-TYPE" "OR10K2 WILD-TYPE" 
      TCGA-44-3396       TCGA-44-3398       TCGA-44-3918       TCGA-44-3919 
"OR10K2 WILD-TYPE" "OR10K2 WILD-TYPE" "OR10K2 WILD-TYPE" "OR10K2 WILD-TYPE" 
      TCGA-44-4112       TCGA-44-5643       TCGA-44-5645       TCGA-44-6144 
"OR10K2 WILD-TYPE" "OR10K2 WILD-TYPE" "OR10K2 WILD-TYPE" "OR10K2 WILD-TYPE" 
      TCGA-44-6145       TCGA-44-6146       TCGA-44-6147       TCGA-44-6148 
"OR10K2 WILD-TYPE" "OR10K2 WILD-TYPE" "OR10K2 WILD-TYPE" "OR10K2 WILD-TYPE" 
      TCGA-44-6774       TCGA-44-6775       TCGA-44-6776       TCGA-44-6777 
"OR10K2 WILD-TYPE" "OR10K2 WILD-TYPE" "OR10K2 WILD-TYPE" "OR10K2 WILD-TYPE" 
      TCGA-44-6778       TCGA-44-6779       TCGA-49-4486       TCGA-49-4487 
"OR10K2 WILD-TYPE" "OR10K2 WILD-TYPE" "OR10K2 WILD-TYPE"   "OR10K2 MUTATED" 
      TCGA-49-4488       TCGA-49-4490       TCGA-49-4494       TCGA-49-4501 
"OR10K2 WILD-TYPE" "OR10K2 WILD-TYPE" "OR10K2 WILD-TYPE" "OR10K2 WILD-TYPE" 
      TCGA-49-4505       TCGA-49-4506       TCGA-49-4507       TCGA-49-4510 
"OR10K2 WILD-TYPE" "OR10K2 WILD-TYPE"   "OR10K2 MUTATED" "OR10K2 WILD-TYPE" 
      TCGA-49-4512       TCGA-49-4514       TCGA-49-6742       TCGA-49-6743 
"OR10K2 WILD-TYPE" "OR10K2 WILD-TYPE" "OR10K2 WILD-TYPE"   "OR10K2 MUTATED" 
      TCGA-49-6744       TCGA-49-6745       TCGA-50-5044       TCGA-50-5045 
"OR10K2 WILD-TYPE" "OR10K2 WILD-TYPE" "OR10K2 WILD-TYPE" "OR10K2 WILD-TYPE" 
      TCGA-50-5049       TCGA-50-5051       TCGA-50-5055       TCGA-50-5066 
"OR10K2 WILD-TYPE" "OR10K2 WILD-TYPE" "OR10K2 WILD-TYPE" "OR10K2 WILD-TYPE" 
      TCGA-50-5068       TCGA-50-5072       TCGA-50-5930       TCGA-50-5931 
"OR10K2 WILD-TYPE" "OR10K2 WILD-TYPE" "OR10K2 WILD-TYPE"   "OR10K2 MUTATED" 
      TCGA-50-5932       TCGA-50-5933       TCGA-50-5935       TCGA-50-5936 
"OR10K2 WILD-TYPE"   "OR10K2 MUTATED" "OR10K2 WILD-TYPE" "OR10K2 WILD-TYPE" 
      TCGA-50-5939       TCGA-50-5941       TCGA-50-5942       TCGA-50-5944 
"OR10K2 WILD-TYPE" "OR10K2 WILD-TYPE" "OR10K2 WILD-TYPE" "OR10K2 WILD-TYPE" 
      TCGA-50-5946       TCGA-50-6590       TCGA-50-6591       TCGA-50-6592 
"OR10K2 WILD-TYPE"   "OR10K2 MUTATED" "OR10K2 WILD-TYPE" "OR10K2 WILD-TYPE" 
      TCGA-50-6593       TCGA-50-6594       TCGA-50-6595       TCGA-50-6597 
"OR10K2 WILD-TYPE" "OR10K2 WILD-TYPE" "OR10K2 WILD-TYPE" "OR10K2 WILD-TYPE" 
      TCGA-55-1592       TCGA-55-1594       TCGA-55-1595       TCGA-55-1596 
"OR10K2 WILD-TYPE" "OR10K2 WILD-TYPE" "OR10K2 WILD-TYPE" "OR10K2 WILD-TYPE" 
      TCGA-55-5899       TCGA-55-6543       TCGA-55-6642       TCGA-55-6712 
"OR10K2 WILD-TYPE" "OR10K2 WILD-TYPE" "OR10K2 WILD-TYPE" "OR10K2 WILD-TYPE" 
      TCGA-64-1676       TCGA-64-1677       TCGA-64-1678       TCGA-64-1680 
"OR10K2 WILD-TYPE" "OR10K2 WILD-TYPE" "OR10K2 WILD-TYPE" "OR10K2 WILD-TYPE" 
      TCGA-64-5774       TCGA-64-5775       TCGA-64-5778       TCGA-64-5779 
"OR10K2 WILD-TYPE" "OR10K2 WILD-TYPE" "OR10K2 WILD-TYPE" "OR10K2 WILD-TYPE" 
      TCGA-64-5781       TCGA-64-5815       TCGA-67-3770       TCGA-67-3771 
"OR10K2 WILD-TYPE" "OR10K2 WILD-TYPE" "OR10K2 WILD-TYPE" "OR10K2 WILD-TYPE" 
      TCGA-67-3772       TCGA-67-3773       TCGA-67-3774       TCGA-67-6215 
"OR10K2 WILD-TYPE" "OR10K2 WILD-TYPE" "OR10K2 WILD-TYPE" "OR10K2 WILD-TYPE" 
      TCGA-67-6216       TCGA-67-6217       TCGA-71-6725       TCGA-73-4658 
"OR10K2 WILD-TYPE" "OR10K2 WILD-TYPE" "OR10K2 WILD-TYPE" "OR10K2 WILD-TYPE" 
      TCGA-73-4659       TCGA-73-4662       TCGA-73-4666       TCGA-73-4668 
"OR10K2 WILD-TYPE" "OR10K2 WILD-TYPE" "OR10K2 WILD-TYPE" "OR10K2 WILD-TYPE" 
      TCGA-73-4670       TCGA-73-4675       TCGA-73-4676       TCGA-73-4677 
"OR10K2 WILD-TYPE" "OR10K2 WILD-TYPE" "OR10K2 WILD-TYPE" "OR10K2 WILD-TYPE" 
      TCGA-91-6828       TCGA-91-6829       TCGA-91-6831       TCGA-91-6835 
"OR10K2 WILD-TYPE" "OR10K2 WILD-TYPE" "OR10K2 WILD-TYPE" "OR10K2 WILD-TYPE" 
      TCGA-91-6836 
"OR10K2 WILD-TYPE" 
      TCGA-05-4249       TCGA-05-4250       TCGA-05-4382       TCGA-05-4384 
"OR10K2 WILD-TYPE" "OR10K2 WILD-TYPE" "OR10K2 WILD-TYPE" "OR10K2 WILD-TYPE" 
      TCGA-05-4390       TCGA-05-4396       TCGA-05-4397       TCGA-05-4398 
"OR10K2 WILD-TYPE" "OR10K2 WILD-TYPE" "OR10K2 WILD-TYPE" "OR10K2 WILD-TYPE" 
      TCGA-05-4402       TCGA-05-4405       TCGA-05-4415       TCGA-05-4417 
"OR10K2 WILD-TYPE" "OR10K2 WILD-TYPE" "OR10K2 WILD-TYPE" "OR10K2 WILD-TYPE" 
      TCGA-05-4418       TCGA-05-4420       TCGA-05-4424       TCGA-05-4426 
"OR10K2 WILD-TYPE" "OR10K2 WILD-TYPE" "OR10K2 WILD-TYPE" "OR10K2 WILD-TYPE" 
      TCGA-05-4427       TCGA-05-4430       TCGA-05-4432       TCGA-05-4433 
"OR10K2 WILD-TYPE" "OR10K2 WILD-TYPE" "OR10K2 WILD-TYPE" "OR10K2 WILD-TYPE" 
      TCGA-05-4434       TCGA-05-5420       TCGA-05-5423       TCGA-05-5425 
"OR10K2 WILD-TYPE" "OR10K2 WILD-TYPE" "OR10K2 WILD-TYPE" "OR10K2 WILD-TYPE" 
      TCGA-05-5429       TCGA-05-5715       TCGA-35-3615       TCGA-35-4122 
"OR10K2 WILD-TYPE" "OR10K2 WILD-TYPE" "OR10K2 WILD-TYPE" "OR10K2 WILD-TYPE" 
      TCGA-35-4123       TCGA-35-5375       TCGA-38-4625       TCGA-38-4626 
"OR10K2 WILD-TYPE" "OR10K2 WILD-TYPE" "OR10K2 WILD-TYPE" "OR10K2 WILD-TYPE" 
      TCGA-38-4627       TCGA-38-4628       TCGA-38-4629       TCGA-38-4630 
"OR10K2 WILD-TYPE" "OR10K2 WILD-TYPE" "OR10K2 WILD-TYPE" "OR10K2 WILD-TYPE" 
      TCGA-38-4631       TCGA-38-4632       TCGA-38-6178       TCGA-44-2655 
"OR10K2 WILD-TYPE" "OR10K2 WILD-TYPE" "OR10K2 WILD-TYPE" "OR10K2 WILD-TYPE" 
      TCGA-44-2656       TCGA-44-2657       TCGA-44-2659       TCGA-44-2661 
"OR10K2 WILD-TYPE" "OR10K2 WILD-TYPE"   "OR10K2 MUTATED" "OR10K2 WILD-TYPE" 
      TCGA-44-2662       TCGA-44-2665       TCGA-44-2666       TCGA-44-2668 
"OR10K2 WILD-TYPE" "OR10K2 WILD-TYPE" "OR10K2 WILD-TYPE" "OR10K2 WILD-TYPE" 
      TCGA-44-3396       TCGA-44-3398       TCGA-44-3918       TCGA-44-3919 
"OR10K2 WILD-TYPE" "OR10K2 WILD-TYPE" "OR10K2 WILD-TYPE" "OR10K2 WILD-TYPE" 
      TCGA-44-4112       TCGA-44-5643       TCGA-44-5645       TCGA-44-6144 
"OR10K2 WILD-TYPE" "OR10K2 WILD-TYPE" "OR10K2 WILD-TYPE" "OR10K2 WILD-TYPE" 
      TCGA-44-6145       TCGA-44-6146       TCGA-44-6147       TCGA-44-6148 
"OR10K2 WILD-TYPE" "OR10K2 WILD-TYPE" "OR10K2 WILD-TYPE" "OR10K2 WILD-TYPE" 
      TCGA-44-6774       TCGA-44-6775       TCGA-44-6776       TCGA-44-6777 
"OR10K2 WILD-TYPE" "OR10K2 WILD-TYPE" "OR10K2 WILD-TYPE" "OR10K2 WILD-TYPE" 
      TCGA-44-6778       TCGA-44-6779       TCGA-49-4486       TCGA-49-4487 
"OR10K2 WILD-TYPE" "OR10K2 WILD-TYPE" "OR10K2 WILD-TYPE"   "OR10K2 MUTATED" 
      TCGA-49-4488       TCGA-49-4490       TCGA-49-4494       TCGA-49-4501 
"OR10K2 WILD-TYPE" "OR10K2 WILD-TYPE" "OR10K2 WILD-TYPE" "OR10K2 WILD-TYPE" 
      TCGA-49-4505       TCGA-49-4506       TCGA-49-4507       TCGA-49-4510 
"OR10K2 WILD-TYPE" "OR10K2 WILD-TYPE"   "OR10K2 MUTATED" "OR10K2 WILD-TYPE" 
      TCGA-49-4512       TCGA-49-4514       TCGA-49-6742       TCGA-49-6743 
"OR10K2 WILD-TYPE" "OR10K2 WILD-TYPE" "OR10K2 WILD-TYPE"   "OR10K2 MUTATED" 
      TCGA-49-6744       TCGA-49-6745       TCGA-50-5044       TCGA-50-5045 
"OR10K2 WILD-TYPE" "OR10K2 WILD-TYPE" "OR10K2 WILD-TYPE" "OR10K2 WILD-TYPE" 
      TCGA-50-5049       TCGA-50-5051       TCGA-50-5055       TCGA-50-5066 
"OR10K2 WILD-TYPE" "OR10K2 WILD-TYPE" "OR10K2 WILD-TYPE" "OR10K2 WILD-TYPE" 
      TCGA-50-5068       TCGA-50-5072       TCGA-50-5930       TCGA-50-5931 
"OR10K2 WILD-TYPE" "OR10K2 WILD-TYPE" "OR10K2 WILD-TYPE"   "OR10K2 MUTATED" 
      TCGA-50-5932       TCGA-50-5933       TCGA-50-5935       TCGA-50-5936 
"OR10K2 WILD-TYPE"   "OR10K2 MUTATED" "OR10K2 WILD-TYPE" "OR10K2 WILD-TYPE" 
      TCGA-50-5939       TCGA-50-5941       TCGA-50-5942       TCGA-50-5944 
"OR10K2 WILD-TYPE" "OR10K2 WILD-TYPE" "OR10K2 WILD-TYPE" "OR10K2 WILD-TYPE" 
      TCGA-50-5946       TCGA-50-6590       TCGA-50-6591       TCGA-50-6592 
"OR10K2 WILD-TYPE"   "OR10K2 MUTATED" "OR10K2 WILD-TYPE" "OR10K2 WILD-TYPE" 
      TCGA-50-6593       TCGA-50-6594       TCGA-50-6595       TCGA-50-6597 
"OR10K2 WILD-TYPE" "OR10K2 WILD-TYPE" "OR10K2 WILD-TYPE" "OR10K2 WILD-TYPE" 
      TCGA-55-1592       TCGA-55-1594       TCGA-55-1595       TCGA-55-1596 
"OR10K2 WILD-TYPE" "OR10K2 WILD-TYPE" "OR10K2 WILD-TYPE" "OR10K2 WILD-TYPE" 
      TCGA-55-5899       TCGA-55-6543       TCGA-55-6642       TCGA-55-6712 
"OR10K2 WILD-TYPE" "OR10K2 WILD-TYPE" "OR10K2 WILD-TYPE" "OR10K2 WILD-TYPE" 
      TCGA-64-1676       TCGA-64-1677       TCGA-64-1678       TCGA-64-1680 
"OR10K2 WILD-TYPE" "OR10K2 WILD-TYPE" "OR10K2 WILD-TYPE" "OR10K2 WILD-TYPE" 
      TCGA-64-5774       TCGA-64-5775       TCGA-64-5778       TCGA-64-5779 
"OR10K2 WILD-TYPE" "OR10K2 WILD-TYPE" "OR10K2 WILD-TYPE" "OR10K2 WILD-TYPE" 
      TCGA-64-5781       TCGA-64-5815       TCGA-67-3770       TCGA-67-3771 
"OR10K2 WILD-TYPE" "OR10K2 WILD-TYPE" "OR10K2 WILD-TYPE" "OR10K2 WILD-TYPE" 
      TCGA-67-3772       TCGA-67-3773       TCGA-67-3774       TCGA-67-6215 
"OR10K2 WILD-TYPE" "OR10K2 WILD-TYPE" "OR10K2 WILD-TYPE" "OR10K2 WILD-TYPE" 
      TCGA-67-6216       TCGA-67-6217       TCGA-71-6725       TCGA-73-4658 
"OR10K2 WILD-TYPE" "OR10K2 WILD-TYPE" "OR10K2 WILD-TYPE" "OR10K2 WILD-TYPE" 
      TCGA-73-4659       TCGA-73-4662       TCGA-73-4666       TCGA-73-4668 
"OR10K2 WILD-TYPE" "OR10K2 WILD-TYPE" "OR10K2 WILD-TYPE" "OR10K2 WILD-TYPE" 
      TCGA-73-4670       TCGA-73-4675       TCGA-73-4676       TCGA-73-4677 
"OR10K2 WILD-TYPE" "OR10K2 WILD-TYPE" "OR10K2 WILD-TYPE" "OR10K2 WILD-TYPE" 
      TCGA-91-6828       TCGA-91-6829       TCGA-91-6831       TCGA-91-6835 
"OR10K2 WILD-TYPE" "OR10K2 WILD-TYPE" "OR10K2 WILD-TYPE" "OR10K2 WILD-TYPE" 
      TCGA-91-6836 
"OR10K2 WILD-TYPE" 
[1] "hr=" "1.4"
D113V2, continuous
D113V3, binary
[1] "tbl2"
                  cls
clus               [,1] [,2]
  OR10K2 MUTATED      6    3
  OR10K2 WILD-TYPE   87   76
        clus
vv       OR10K2 MUTATED OR10K2 WILD-TYPE
  FEMALE              6               87
  MALE                3               76
D113V4, continuous
D113V5, multiclass
D113V6, multiclass
    clus
vv   OR10K2 MUTATED OR10K2 WILD-TYPE
  T1              3               38
  T2              3              105
  T3              2               12
  T4              1                7
D113V7, multiclass
       clus
vv      OR10K2 MUTATED OR10K2 WILD-TYPE
  N0                 4               91
  N1                 2               35
  N2+N3              3               32
D113V8, multiclass
    clus
vv   OR10K2 MUTATED OR10K2 WILD-TYPE
  M0              7              130
  M1              1                8
  MX              1               21
D113V9, multiclass
     clus
vv    OR10K2 MUTATED OR10K2 WILD-TYPE
  I                4               84
  II               1               32
  III              3               36
  IV               1                8
D113V10, binary
[1] "tbl2"
                  cls
clus               [,1] [,2]
  OR10K2 MUTATED      2    7
  OR10K2 WILD-TYPE   14  149
     clus
vv    OR10K2 MUTATED OR10K2 WILD-TYPE
  NO               2               14
  YES              7              149
D113V11, continuous
D113V12, continuous
D113V13, multiclass
                                             clus
vv                                            OR10K2 MUTATED OR10K2 WILD-TYPE
  CURRENT REFORMED SMOKER FOR < OR = 15 YEARS              7               55
  CURRENT REFORMED SMOKER FOR > 15 YEARS                   0               46
  CURRENT SMOKER                                           0               28
  LIFELONG NON-SMOKER                                      0               24
D113V14, continuous
[1] "Remove cluster labels:" "OR10K2 MUTATED"        
clus
  OR10K2 MUTATED OR10K2 WILD-TYPE 
               1               67 
      TCGA-05-4384       TCGA-05-4390       TCGA-05-4396       TCGA-05-4405 
"OR10K2 WILD-TYPE" "OR10K2 WILD-TYPE" "OR10K2 WILD-TYPE" "OR10K2 WILD-TYPE" 
      TCGA-05-4410       TCGA-05-4415       TCGA-05-4417       TCGA-05-4424 
"OR10K2 WILD-TYPE" "OR10K2 WILD-TYPE" "OR10K2 WILD-TYPE" "OR10K2 WILD-TYPE" 
      TCGA-05-4427       TCGA-05-4433       TCGA-05-5420       TCGA-05-5423 
"OR10K2 WILD-TYPE" "OR10K2 WILD-TYPE" "OR10K2 WILD-TYPE" "OR10K2 WILD-TYPE" 
      TCGA-05-5425       TCGA-05-5428       TCGA-35-4122       TCGA-35-4123 
"OR10K2 WILD-TYPE" "OR10K2 WILD-TYPE" "OR10K2 WILD-TYPE" "OR10K2 WILD-TYPE" 
      TCGA-35-5375       TCGA-38-4625       TCGA-38-4626       TCGA-44-2655 
"OR10K2 WILD-TYPE" "OR10K2 WILD-TYPE" "OR10K2 WILD-TYPE" "OR10K2 WILD-TYPE" 
      TCGA-44-2656       TCGA-44-2657       TCGA-44-2662       TCGA-44-2666 
"OR10K2 WILD-TYPE" "OR10K2 WILD-TYPE" "OR10K2 WILD-TYPE" "OR10K2 WILD-TYPE" 
      TCGA-44-2668       TCGA-44-3396       TCGA-44-3398       TCGA-44-3918 
"OR10K2 WILD-TYPE" "OR10K2 WILD-TYPE" "OR10K2 WILD-TYPE" "OR10K2 WILD-TYPE" 
      TCGA-44-4112       TCGA-44-5645       TCGA-44-6144       TCGA-44-6145 
"OR10K2 WILD-TYPE" "OR10K2 WILD-TYPE" "OR10K2 WILD-TYPE" "OR10K2 WILD-TYPE" 
      TCGA-44-6147       TCGA-44-6148       TCGA-44-6774       TCGA-44-6775 
"OR10K2 WILD-TYPE" "OR10K2 WILD-TYPE" "OR10K2 WILD-TYPE" "OR10K2 WILD-TYPE" 
      TCGA-44-6776       TCGA-44-6777       TCGA-44-6778       TCGA-44-6779 
"OR10K2 WILD-TYPE" "OR10K2 WILD-TYPE" "OR10K2 WILD-TYPE" "OR10K2 WILD-TYPE" 
      TCGA-49-4486       TCGA-49-4494       TCGA-49-4505       TCGA-55-1592 
"OR10K2 WILD-TYPE" "OR10K2 WILD-TYPE" "OR10K2 WILD-TYPE" "OR10K2 WILD-TYPE" 
      TCGA-55-1594       TCGA-55-1595       TCGA-55-1596       TCGA-55-5899 
"OR10K2 WILD-TYPE" "OR10K2 WILD-TYPE" "OR10K2 WILD-TYPE" "OR10K2 WILD-TYPE" 
      TCGA-55-6642       TCGA-55-6712       TCGA-64-1677       TCGA-64-1678 
"OR10K2 WILD-TYPE" "OR10K2 WILD-TYPE" "OR10K2 WILD-TYPE" "OR10K2 WILD-TYPE" 
      TCGA-64-1680       TCGA-64-5774       TCGA-64-5775       TCGA-64-5778 
"OR10K2 WILD-TYPE" "OR10K2 WILD-TYPE" "OR10K2 WILD-TYPE" "OR10K2 WILD-TYPE" 
      TCGA-64-5779       TCGA-64-5781       TCGA-73-4659       TCGA-73-4662 
"OR10K2 WILD-TYPE" "OR10K2 WILD-TYPE" "OR10K2 WILD-TYPE" "OR10K2 WILD-TYPE" 
      TCGA-73-4666       TCGA-73-4668       TCGA-73-4670       TCGA-73-4675 
"OR10K2 WILD-TYPE" "OR10K2 WILD-TYPE" "OR10K2 WILD-TYPE" "OR10K2 WILD-TYPE" 
      TCGA-73-4676       TCGA-91-6829       TCGA-91-6836 
"OR10K2 WILD-TYPE" "OR10K2 WILD-TYPE" "OR10K2 WILD-TYPE" 

Clustering(114) Variable = NPFFR2 MUTATION ANALYSIS
D114V1, survival
                  sevent
clus2               0  1
  NPFFR2 MUTATED    7  0
  NPFFR2 WILD-TYPE 92 50
  NPFFR2 MUTATED NPFFR2 WILD-TYPE 
               7              142 
  NPFFR2 MUTATED NPFFR2 WILD-TYPE 
               0               50 
$`NPFFR2 MUTATED`
TCGA-05-4405 TCGA-35-3615 TCGA-44-4112 TCGA-44-6776 TCGA-44-6778 TCGA-67-3774 
       20.05         0.46         4.60        63.72        36.49         0.59 
TCGA-73-4666 
       20.28 

$`NPFFR2 WILD-TYPE`
TCGA-05-4249 TCGA-05-4250 TCGA-05-4382 TCGA-05-4384 TCGA-05-4390 TCGA-05-4396 
       38.07         3.98        19.92        14.01        37.02         9.96 
TCGA-05-4397 TCGA-05-4398 TCGA-05-4402 TCGA-05-4415 TCGA-05-4417 TCGA-05-4418 
       24.03        47.05         8.02         2.96        14.93         8.98 
TCGA-05-4420 TCGA-05-4424 TCGA-05-4426 TCGA-05-4427 TCGA-05-4430 TCGA-05-4432 
       29.95        30.02        26.01        26.01        25.02        25.02 
TCGA-05-4433 TCGA-05-4434 TCGA-05-5420 TCGA-05-5423 TCGA-05-5425 TCGA-05-5429 
       24.00        15.02         1.02         4.96         2.96         0.99 
TCGA-05-5715 TCGA-35-4122 TCGA-35-4123 TCGA-35-5375 TCGA-38-4625 TCGA-38-4626 
        2.04         7.36         5.95         8.68        47.61        85.32 
TCGA-38-4627 TCGA-38-4628 TCGA-38-4629 TCGA-38-4630 TCGA-38-4631 TCGA-38-4632 
       37.71        49.02        28.37        35.28        11.64        44.61 
TCGA-38-6178 TCGA-44-2655 TCGA-44-2656 TCGA-44-2657 TCGA-44-2659 TCGA-44-2661 
        5.19        18.87        19.10        13.15        17.39         3.39 
TCGA-44-2662 TCGA-44-2665 TCGA-44-2666 TCGA-44-2668 TCGA-44-3396 TCGA-44-3398 
       15.78        13.15         3.19         8.09        10.22         8.32 
TCGA-44-3918 TCGA-44-3919 TCGA-44-5643 TCGA-44-5645 TCGA-44-6144 TCGA-44-6145 
        6.44         6.21         3.48         6.84         0.30         3.35 
TCGA-44-6146 TCGA-44-6147 TCGA-44-6148 TCGA-44-6774 TCGA-44-6775 TCGA-44-6777 
        9.93         7.76         3.12         5.42         2.70        32.45 
TCGA-44-6779 TCGA-49-4486 TCGA-49-4487 TCGA-49-4488 TCGA-49-4490 TCGA-49-4494 
       16.41        76.21        28.11        28.57        12.66        35.54 
TCGA-49-4501 TCGA-49-4505 TCGA-49-4506 TCGA-49-4507 TCGA-49-4510 TCGA-49-4512 
       46.72        14.07        32.84         8.81        29.46        29.75 
TCGA-49-4514 TCGA-49-6742 TCGA-49-6743 TCGA-49-6744 TCGA-49-6745 TCGA-50-5044 
       43.20        15.02        12.13        12.99         4.93        20.48 
TCGA-50-5045 TCGA-50-5049 TCGA-50-5051 TCGA-50-5055 TCGA-50-5066 TCGA-50-5068 
       71.47        48.82        14.96        25.81         9.76        49.28 
TCGA-50-5072 TCGA-50-5930 TCGA-50-5931 TCGA-50-5932 TCGA-50-5933 TCGA-50-5935 
        8.05         9.27         8.78        35.87        77.88        21.47 
TCGA-50-5936 TCGA-50-5939 TCGA-50-5941 TCGA-50-5942 TCGA-50-5944 TCGA-50-5946 
        8.45        15.12         9.37         4.44        12.26        11.47 
TCGA-50-6590 TCGA-50-6591 TCGA-50-6592 TCGA-50-6593 TCGA-50-6594 TCGA-50-6595 
       42.31         3.88        25.51        11.05        12.16         6.21 
TCGA-50-6597 TCGA-55-1592 TCGA-55-1594 TCGA-55-1595 TCGA-55-1596 TCGA-55-5899 
       33.37        23.05        38.73        48.62        45.17         2.86 
TCGA-55-6543 TCGA-55-6642 TCGA-55-6712 TCGA-64-1676 TCGA-64-1677 TCGA-64-1678 
        0.07        32.61         0.79        56.81        20.65        39.09 
TCGA-64-1680 TCGA-64-5774 TCGA-64-5775 TCGA-64-5778 TCGA-64-5779 TCGA-64-5781 
       37.02        83.84         0.10        30.44        16.67        39.52 
TCGA-64-5815 TCGA-67-3770 TCGA-67-3771 TCGA-67-3772 TCGA-67-3773 TCGA-67-6215 
        7.33         0.99         1.97         0.59         2.04         0.89 
TCGA-67-6216 TCGA-67-6217 TCGA-71-6725 TCGA-73-4658 TCGA-73-4659 TCGA-73-4662 
        0.69        13.87         2.01        52.57        23.38        29.95 
TCGA-73-4668 TCGA-73-4670 TCGA-73-4675 TCGA-73-4676 TCGA-73-4677 TCGA-91-6828 
       15.35         0.46         1.32         4.01         1.25         1.22 
TCGA-91-6829 TCGA-91-6831 TCGA-91-6835 TCGA-91-6836 
       41.33         1.28         1.15         0.36 

  NPFFR2 MUTATED NPFFR2 WILD-TYPE 
            0.46             0.07 
  NPFFR2 MUTATED NPFFR2 WILD-TYPE 
           63.72            85.32 
  NPFFR2 MUTATED NPFFR2 WILD-TYPE 
           20.05            13.51 
[1] "0.5 - 63.7 (20.1)" "0.1 - 85.3 (13.5)"
      TCGA-05-4249       TCGA-05-4250       TCGA-05-4382       TCGA-05-4384 
"NPFFR2 WILD-TYPE" "NPFFR2 WILD-TYPE" "NPFFR2 WILD-TYPE" "NPFFR2 WILD-TYPE" 
      TCGA-05-4390       TCGA-05-4396       TCGA-05-4397       TCGA-05-4398 
"NPFFR2 WILD-TYPE" "NPFFR2 WILD-TYPE" "NPFFR2 WILD-TYPE" "NPFFR2 WILD-TYPE" 
      TCGA-05-4402       TCGA-05-4405       TCGA-05-4415       TCGA-05-4417 
"NPFFR2 WILD-TYPE"   "NPFFR2 MUTATED" "NPFFR2 WILD-TYPE" "NPFFR2 WILD-TYPE" 
      TCGA-05-4418       TCGA-05-4420       TCGA-05-4424       TCGA-05-4426 
"NPFFR2 WILD-TYPE" "NPFFR2 WILD-TYPE" "NPFFR2 WILD-TYPE" "NPFFR2 WILD-TYPE" 
      TCGA-05-4427       TCGA-05-4430       TCGA-05-4432       TCGA-05-4433 
"NPFFR2 WILD-TYPE" "NPFFR2 WILD-TYPE" "NPFFR2 WILD-TYPE" "NPFFR2 WILD-TYPE" 
      TCGA-05-4434       TCGA-05-5420       TCGA-05-5423       TCGA-05-5425 
"NPFFR2 WILD-TYPE" "NPFFR2 WILD-TYPE" "NPFFR2 WILD-TYPE" "NPFFR2 WILD-TYPE" 
      TCGA-05-5429       TCGA-05-5715       TCGA-35-3615       TCGA-35-4122 
"NPFFR2 WILD-TYPE" "NPFFR2 WILD-TYPE"   "NPFFR2 MUTATED" "NPFFR2 WILD-TYPE" 
      TCGA-35-4123       TCGA-35-5375       TCGA-38-4625       TCGA-38-4626 
"NPFFR2 WILD-TYPE" "NPFFR2 WILD-TYPE" "NPFFR2 WILD-TYPE" "NPFFR2 WILD-TYPE" 
      TCGA-38-4627       TCGA-38-4628       TCGA-38-4629       TCGA-38-4630 
"NPFFR2 WILD-TYPE" "NPFFR2 WILD-TYPE" "NPFFR2 WILD-TYPE" "NPFFR2 WILD-TYPE" 
      TCGA-38-4631       TCGA-38-4632       TCGA-38-6178       TCGA-44-2655 
"NPFFR2 WILD-TYPE" "NPFFR2 WILD-TYPE" "NPFFR2 WILD-TYPE" "NPFFR2 WILD-TYPE" 
      TCGA-44-2656       TCGA-44-2657       TCGA-44-2659       TCGA-44-2661 
"NPFFR2 WILD-TYPE" "NPFFR2 WILD-TYPE" "NPFFR2 WILD-TYPE" "NPFFR2 WILD-TYPE" 
      TCGA-44-2662       TCGA-44-2665       TCGA-44-2666       TCGA-44-2668 
"NPFFR2 WILD-TYPE" "NPFFR2 WILD-TYPE" "NPFFR2 WILD-TYPE" "NPFFR2 WILD-TYPE" 
      TCGA-44-3396       TCGA-44-3398       TCGA-44-3918       TCGA-44-3919 
"NPFFR2 WILD-TYPE" "NPFFR2 WILD-TYPE" "NPFFR2 WILD-TYPE" "NPFFR2 WILD-TYPE" 
      TCGA-44-4112       TCGA-44-5643       TCGA-44-5645       TCGA-44-6144 
  "NPFFR2 MUTATED" "NPFFR2 WILD-TYPE" "NPFFR2 WILD-TYPE" "NPFFR2 WILD-TYPE" 
      TCGA-44-6145       TCGA-44-6146       TCGA-44-6147       TCGA-44-6148 
"NPFFR2 WILD-TYPE" "NPFFR2 WILD-TYPE" "NPFFR2 WILD-TYPE" "NPFFR2 WILD-TYPE" 
      TCGA-44-6774       TCGA-44-6775       TCGA-44-6776       TCGA-44-6777 
"NPFFR2 WILD-TYPE" "NPFFR2 WILD-TYPE"   "NPFFR2 MUTATED" "NPFFR2 WILD-TYPE" 
      TCGA-44-6778       TCGA-44-6779       TCGA-49-4486       TCGA-49-4487 
  "NPFFR2 MUTATED" "NPFFR2 WILD-TYPE" "NPFFR2 WILD-TYPE" "NPFFR2 WILD-TYPE" 
      TCGA-49-4488       TCGA-49-4490       TCGA-49-4494       TCGA-49-4501 
"NPFFR2 WILD-TYPE" "NPFFR2 WILD-TYPE" "NPFFR2 WILD-TYPE" "NPFFR2 WILD-TYPE" 
      TCGA-49-4505       TCGA-49-4506       TCGA-49-4507       TCGA-49-4510 
"NPFFR2 WILD-TYPE" "NPFFR2 WILD-TYPE" "NPFFR2 WILD-TYPE" "NPFFR2 WILD-TYPE" 
      TCGA-49-4512       TCGA-49-4514       TCGA-49-6742       TCGA-49-6743 
"NPFFR2 WILD-TYPE" "NPFFR2 WILD-TYPE" "NPFFR2 WILD-TYPE" "NPFFR2 WILD-TYPE" 
      TCGA-49-6744       TCGA-49-6745       TCGA-50-5044       TCGA-50-5045 
"NPFFR2 WILD-TYPE" "NPFFR2 WILD-TYPE" "NPFFR2 WILD-TYPE" "NPFFR2 WILD-TYPE" 
      TCGA-50-5049       TCGA-50-5051       TCGA-50-5055       TCGA-50-5066 
"NPFFR2 WILD-TYPE" "NPFFR2 WILD-TYPE" "NPFFR2 WILD-TYPE" "NPFFR2 WILD-TYPE" 
      TCGA-50-5068       TCGA-50-5072       TCGA-50-5930       TCGA-50-5931 
"NPFFR2 WILD-TYPE" "NPFFR2 WILD-TYPE" "NPFFR2 WILD-TYPE" "NPFFR2 WILD-TYPE" 
      TCGA-50-5932       TCGA-50-5933       TCGA-50-5935       TCGA-50-5936 
"NPFFR2 WILD-TYPE" "NPFFR2 WILD-TYPE" "NPFFR2 WILD-TYPE" "NPFFR2 WILD-TYPE" 
      TCGA-50-5939       TCGA-50-5941       TCGA-50-5942       TCGA-50-5944 
"NPFFR2 WILD-TYPE" "NPFFR2 WILD-TYPE" "NPFFR2 WILD-TYPE" "NPFFR2 WILD-TYPE" 
      TCGA-50-5946       TCGA-50-6590       TCGA-50-6591       TCGA-50-6592 
"NPFFR2 WILD-TYPE" "NPFFR2 WILD-TYPE" "NPFFR2 WILD-TYPE" "NPFFR2 WILD-TYPE" 
      TCGA-50-6593       TCGA-50-6594       TCGA-50-6595       TCGA-50-6597 
"NPFFR2 WILD-TYPE" "NPFFR2 WILD-TYPE" "NPFFR2 WILD-TYPE" "NPFFR2 WILD-TYPE" 
      TCGA-55-1592       TCGA-55-1594       TCGA-55-1595       TCGA-55-1596 
"NPFFR2 WILD-TYPE" "NPFFR2 WILD-TYPE" "NPFFR2 WILD-TYPE" "NPFFR2 WILD-TYPE" 
      TCGA-55-5899       TCGA-55-6543       TCGA-55-6642       TCGA-55-6712 
"NPFFR2 WILD-TYPE" "NPFFR2 WILD-TYPE" "NPFFR2 WILD-TYPE" "NPFFR2 WILD-TYPE" 
      TCGA-64-1676       TCGA-64-1677       TCGA-64-1678       TCGA-64-1680 
"NPFFR2 WILD-TYPE" "NPFFR2 WILD-TYPE" "NPFFR2 WILD-TYPE" "NPFFR2 WILD-TYPE" 
      TCGA-64-5774       TCGA-64-5775       TCGA-64-5778       TCGA-64-5779 
"NPFFR2 WILD-TYPE" "NPFFR2 WILD-TYPE" "NPFFR2 WILD-TYPE" "NPFFR2 WILD-TYPE" 
      TCGA-64-5781       TCGA-64-5815       TCGA-67-3770       TCGA-67-3771 
"NPFFR2 WILD-TYPE" "NPFFR2 WILD-TYPE" "NPFFR2 WILD-TYPE" "NPFFR2 WILD-TYPE" 
      TCGA-67-3772       TCGA-67-3773       TCGA-67-3774       TCGA-67-6215 
"NPFFR2 WILD-TYPE" "NPFFR2 WILD-TYPE"   "NPFFR2 MUTATED" "NPFFR2 WILD-TYPE" 
      TCGA-67-6216       TCGA-67-6217       TCGA-71-6725       TCGA-73-4658 
"NPFFR2 WILD-TYPE" "NPFFR2 WILD-TYPE" "NPFFR2 WILD-TYPE" "NPFFR2 WILD-TYPE" 
      TCGA-73-4659       TCGA-73-4662       TCGA-73-4666       TCGA-73-4668 
"NPFFR2 WILD-TYPE" "NPFFR2 WILD-TYPE"   "NPFFR2 MUTATED" "NPFFR2 WILD-TYPE" 
      TCGA-73-4670       TCGA-73-4675       TCGA-73-4676       TCGA-73-4677 
"NPFFR2 WILD-TYPE" "NPFFR2 WILD-TYPE" "NPFFR2 WILD-TYPE" "NPFFR2 WILD-TYPE" 
      TCGA-91-6828       TCGA-91-6829       TCGA-91-6831       TCGA-91-6835 
"NPFFR2 WILD-TYPE" "NPFFR2 WILD-TYPE" "NPFFR2 WILD-TYPE" "NPFFR2 WILD-TYPE" 
      TCGA-91-6836 
"NPFFR2 WILD-TYPE" 
      TCGA-05-4249       TCGA-05-4250       TCGA-05-4382       TCGA-05-4384 
"NPFFR2 WILD-TYPE" "NPFFR2 WILD-TYPE" "NPFFR2 WILD-TYPE" "NPFFR2 WILD-TYPE" 
      TCGA-05-4390       TCGA-05-4396       TCGA-05-4397       TCGA-05-4398 
"NPFFR2 WILD-TYPE" "NPFFR2 WILD-TYPE" "NPFFR2 WILD-TYPE" "NPFFR2 WILD-TYPE" 
      TCGA-05-4402       TCGA-05-4405       TCGA-05-4415       TCGA-05-4417 
"NPFFR2 WILD-TYPE"   "NPFFR2 MUTATED" "NPFFR2 WILD-TYPE" "NPFFR2 WILD-TYPE" 
      TCGA-05-4418       TCGA-05-4420       TCGA-05-4424       TCGA-05-4426 
"NPFFR2 WILD-TYPE" "NPFFR2 WILD-TYPE" "NPFFR2 WILD-TYPE" "NPFFR2 WILD-TYPE" 
      TCGA-05-4427       TCGA-05-4430       TCGA-05-4432       TCGA-05-4433 
"NPFFR2 WILD-TYPE" "NPFFR2 WILD-TYPE" "NPFFR2 WILD-TYPE" "NPFFR2 WILD-TYPE" 
      TCGA-05-4434       TCGA-05-5420       TCGA-05-5423       TCGA-05-5425 
"NPFFR2 WILD-TYPE" "NPFFR2 WILD-TYPE" "NPFFR2 WILD-TYPE" "NPFFR2 WILD-TYPE" 
      TCGA-05-5429       TCGA-05-5715       TCGA-35-3615       TCGA-35-4122 
"NPFFR2 WILD-TYPE" "NPFFR2 WILD-TYPE"   "NPFFR2 MUTATED" "NPFFR2 WILD-TYPE" 
      TCGA-35-4123       TCGA-35-5375       TCGA-38-4625       TCGA-38-4626 
"NPFFR2 WILD-TYPE" "NPFFR2 WILD-TYPE" "NPFFR2 WILD-TYPE" "NPFFR2 WILD-TYPE" 
      TCGA-38-4627       TCGA-38-4628       TCGA-38-4629       TCGA-38-4630 
"NPFFR2 WILD-TYPE" "NPFFR2 WILD-TYPE" "NPFFR2 WILD-TYPE" "NPFFR2 WILD-TYPE" 
      TCGA-38-4631       TCGA-38-4632       TCGA-38-6178       TCGA-44-2655 
"NPFFR2 WILD-TYPE" "NPFFR2 WILD-TYPE" "NPFFR2 WILD-TYPE" "NPFFR2 WILD-TYPE" 
      TCGA-44-2656       TCGA-44-2657       TCGA-44-2659       TCGA-44-2661 
"NPFFR2 WILD-TYPE" "NPFFR2 WILD-TYPE" "NPFFR2 WILD-TYPE" "NPFFR2 WILD-TYPE" 
      TCGA-44-2662       TCGA-44-2665       TCGA-44-2666       TCGA-44-2668 
"NPFFR2 WILD-TYPE" "NPFFR2 WILD-TYPE" "NPFFR2 WILD-TYPE" "NPFFR2 WILD-TYPE" 
      TCGA-44-3396       TCGA-44-3398       TCGA-44-3918       TCGA-44-3919 
"NPFFR2 WILD-TYPE" "NPFFR2 WILD-TYPE" "NPFFR2 WILD-TYPE" "NPFFR2 WILD-TYPE" 
      TCGA-44-4112       TCGA-44-5643       TCGA-44-5645       TCGA-44-6144 
  "NPFFR2 MUTATED" "NPFFR2 WILD-TYPE" "NPFFR2 WILD-TYPE" "NPFFR2 WILD-TYPE" 
      TCGA-44-6145       TCGA-44-6146       TCGA-44-6147       TCGA-44-6148 
"NPFFR2 WILD-TYPE" "NPFFR2 WILD-TYPE" "NPFFR2 WILD-TYPE" "NPFFR2 WILD-TYPE" 
      TCGA-44-6774       TCGA-44-6775       TCGA-44-6776       TCGA-44-6777 
"NPFFR2 WILD-TYPE" "NPFFR2 WILD-TYPE"   "NPFFR2 MUTATED" "NPFFR2 WILD-TYPE" 
      TCGA-44-6778       TCGA-44-6779       TCGA-49-4486       TCGA-49-4487 
  "NPFFR2 MUTATED" "NPFFR2 WILD-TYPE" "NPFFR2 WILD-TYPE" "NPFFR2 WILD-TYPE" 
      TCGA-49-4488       TCGA-49-4490       TCGA-49-4494       TCGA-49-4501 
"NPFFR2 WILD-TYPE" "NPFFR2 WILD-TYPE" "NPFFR2 WILD-TYPE" "NPFFR2 WILD-TYPE" 
      TCGA-49-4505       TCGA-49-4506       TCGA-49-4507       TCGA-49-4510 
"NPFFR2 WILD-TYPE" "NPFFR2 WILD-TYPE" "NPFFR2 WILD-TYPE" "NPFFR2 WILD-TYPE" 
      TCGA-49-4512       TCGA-49-4514       TCGA-49-6742       TCGA-49-6743 
"NPFFR2 WILD-TYPE" "NPFFR2 WILD-TYPE" "NPFFR2 WILD-TYPE" "NPFFR2 WILD-TYPE" 
      TCGA-49-6744       TCGA-49-6745       TCGA-50-5044       TCGA-50-5045 
"NPFFR2 WILD-TYPE" "NPFFR2 WILD-TYPE" "NPFFR2 WILD-TYPE" "NPFFR2 WILD-TYPE" 
      TCGA-50-5049       TCGA-50-5051       TCGA-50-5055       TCGA-50-5066 
"NPFFR2 WILD-TYPE" "NPFFR2 WILD-TYPE" "NPFFR2 WILD-TYPE" "NPFFR2 WILD-TYPE" 
      TCGA-50-5068       TCGA-50-5072       TCGA-50-5930       TCGA-50-5931 
"NPFFR2 WILD-TYPE" "NPFFR2 WILD-TYPE" "NPFFR2 WILD-TYPE" "NPFFR2 WILD-TYPE" 
      TCGA-50-5932       TCGA-50-5933       TCGA-50-5935       TCGA-50-5936 
"NPFFR2 WILD-TYPE" "NPFFR2 WILD-TYPE" "NPFFR2 WILD-TYPE" "NPFFR2 WILD-TYPE" 
      TCGA-50-5939       TCGA-50-5941       TCGA-50-5942       TCGA-50-5944 
"NPFFR2 WILD-TYPE" "NPFFR2 WILD-TYPE" "NPFFR2 WILD-TYPE" "NPFFR2 WILD-TYPE" 
      TCGA-50-5946       TCGA-50-6590       TCGA-50-6591       TCGA-50-6592 
"NPFFR2 WILD-TYPE" "NPFFR2 WILD-TYPE" "NPFFR2 WILD-TYPE" "NPFFR2 WILD-TYPE" 
      TCGA-50-6593       TCGA-50-6594       TCGA-50-6595       TCGA-50-6597 
"NPFFR2 WILD-TYPE" "NPFFR2 WILD-TYPE" "NPFFR2 WILD-TYPE" "NPFFR2 WILD-TYPE" 
      TCGA-55-1592       TCGA-55-1594       TCGA-55-1595       TCGA-55-1596 
"NPFFR2 WILD-TYPE" "NPFFR2 WILD-TYPE" "NPFFR2 WILD-TYPE" "NPFFR2 WILD-TYPE" 
      TCGA-55-5899       TCGA-55-6543       TCGA-55-6642       TCGA-55-6712 
"NPFFR2 WILD-TYPE" "NPFFR2 WILD-TYPE" "NPFFR2 WILD-TYPE" "NPFFR2 WILD-TYPE" 
      TCGA-64-1676       TCGA-64-1677       TCGA-64-1678       TCGA-64-1680 
"NPFFR2 WILD-TYPE" "NPFFR2 WILD-TYPE" "NPFFR2 WILD-TYPE" "NPFFR2 WILD-TYPE" 
      TCGA-64-5774       TCGA-64-5775       TCGA-64-5778       TCGA-64-5779 
"NPFFR2 WILD-TYPE" "NPFFR2 WILD-TYPE" "NPFFR2 WILD-TYPE" "NPFFR2 WILD-TYPE" 
      TCGA-64-5781       TCGA-64-5815       TCGA-67-3770       TCGA-67-3771 
"NPFFR2 WILD-TYPE" "NPFFR2 WILD-TYPE" "NPFFR2 WILD-TYPE" "NPFFR2 WILD-TYPE" 
      TCGA-67-3772       TCGA-67-3773       TCGA-67-3774       TCGA-67-6215 
"NPFFR2 WILD-TYPE" "NPFFR2 WILD-TYPE"   "NPFFR2 MUTATED" "NPFFR2 WILD-TYPE" 
      TCGA-67-6216       TCGA-67-6217       TCGA-71-6725       TCGA-73-4658 
"NPFFR2 WILD-TYPE" "NPFFR2 WILD-TYPE" "NPFFR2 WILD-TYPE" "NPFFR2 WILD-TYPE" 
      TCGA-73-4659       TCGA-73-4662       TCGA-73-4666       TCGA-73-4668 
"NPFFR2 WILD-TYPE" "NPFFR2 WILD-TYPE"   "NPFFR2 MUTATED" "NPFFR2 WILD-TYPE" 
      TCGA-73-4670       TCGA-73-4675       TCGA-73-4676       TCGA-73-4677 
"NPFFR2 WILD-TYPE" "NPFFR2 WILD-TYPE" "NPFFR2 WILD-TYPE" "NPFFR2 WILD-TYPE" 
      TCGA-91-6828       TCGA-91-6829       TCGA-91-6831       TCGA-91-6835 
"NPFFR2 WILD-TYPE" "NPFFR2 WILD-TYPE" "NPFFR2 WILD-TYPE" "NPFFR2 WILD-TYPE" 
      TCGA-91-6836 
"NPFFR2 WILD-TYPE" 
      TCGA-05-4249       TCGA-05-4250       TCGA-05-4382       TCGA-05-4384 
"NPFFR2 WILD-TYPE" "NPFFR2 WILD-TYPE" "NPFFR2 WILD-TYPE" "NPFFR2 WILD-TYPE" 
      TCGA-05-4390       TCGA-05-4396       TCGA-05-4397       TCGA-05-4398 
"NPFFR2 WILD-TYPE" "NPFFR2 WILD-TYPE" "NPFFR2 WILD-TYPE" "NPFFR2 WILD-TYPE" 
      TCGA-05-4402       TCGA-05-4405       TCGA-05-4415       TCGA-05-4417 
"NPFFR2 WILD-TYPE"   "NPFFR2 MUTATED" "NPFFR2 WILD-TYPE" "NPFFR2 WILD-TYPE" 
      TCGA-05-4418       TCGA-05-4420       TCGA-05-4424       TCGA-05-4426 
"NPFFR2 WILD-TYPE" "NPFFR2 WILD-TYPE" "NPFFR2 WILD-TYPE" "NPFFR2 WILD-TYPE" 
      TCGA-05-4427       TCGA-05-4430       TCGA-05-4432       TCGA-05-4433 
"NPFFR2 WILD-TYPE" "NPFFR2 WILD-TYPE" "NPFFR2 WILD-TYPE" "NPFFR2 WILD-TYPE" 
      TCGA-05-4434       TCGA-05-5420       TCGA-05-5423       TCGA-05-5425 
"NPFFR2 WILD-TYPE" "NPFFR2 WILD-TYPE" "NPFFR2 WILD-TYPE" "NPFFR2 WILD-TYPE" 
      TCGA-05-5429       TCGA-05-5715       TCGA-35-3615       TCGA-35-4122 
"NPFFR2 WILD-TYPE" "NPFFR2 WILD-TYPE"   "NPFFR2 MUTATED" "NPFFR2 WILD-TYPE" 
      TCGA-35-4123       TCGA-35-5375       TCGA-38-4625       TCGA-38-4626 
"NPFFR2 WILD-TYPE" "NPFFR2 WILD-TYPE" "NPFFR2 WILD-TYPE" "NPFFR2 WILD-TYPE" 
      TCGA-38-4627       TCGA-38-4628       TCGA-38-4629       TCGA-38-4630 
"NPFFR2 WILD-TYPE" "NPFFR2 WILD-TYPE" "NPFFR2 WILD-TYPE" "NPFFR2 WILD-TYPE" 
      TCGA-38-4631       TCGA-38-4632       TCGA-38-6178       TCGA-44-2655 
"NPFFR2 WILD-TYPE" "NPFFR2 WILD-TYPE" "NPFFR2 WILD-TYPE" "NPFFR2 WILD-TYPE" 
      TCGA-44-2656       TCGA-44-2657       TCGA-44-2659       TCGA-44-2661 
"NPFFR2 WILD-TYPE" "NPFFR2 WILD-TYPE" "NPFFR2 WILD-TYPE" "NPFFR2 WILD-TYPE" 
      TCGA-44-2662       TCGA-44-2665       TCGA-44-2666       TCGA-44-2668 
"NPFFR2 WILD-TYPE" "NPFFR2 WILD-TYPE" "NPFFR2 WILD-TYPE" "NPFFR2 WILD-TYPE" 
      TCGA-44-3396       TCGA-44-3398       TCGA-44-3918       TCGA-44-3919 
"NPFFR2 WILD-TYPE" "NPFFR2 WILD-TYPE" "NPFFR2 WILD-TYPE" "NPFFR2 WILD-TYPE" 
      TCGA-44-4112       TCGA-44-5643       TCGA-44-5645       TCGA-44-6144 
  "NPFFR2 MUTATED" "NPFFR2 WILD-TYPE" "NPFFR2 WILD-TYPE" "NPFFR2 WILD-TYPE" 
      TCGA-44-6145       TCGA-44-6146       TCGA-44-6147       TCGA-44-6148 
"NPFFR2 WILD-TYPE" "NPFFR2 WILD-TYPE" "NPFFR2 WILD-TYPE" "NPFFR2 WILD-TYPE" 
      TCGA-44-6774       TCGA-44-6775       TCGA-44-6776       TCGA-44-6777 
"NPFFR2 WILD-TYPE" "NPFFR2 WILD-TYPE"   "NPFFR2 MUTATED" "NPFFR2 WILD-TYPE" 
      TCGA-44-6778       TCGA-44-6779       TCGA-49-4486       TCGA-49-4487 
  "NPFFR2 MUTATED" "NPFFR2 WILD-TYPE" "NPFFR2 WILD-TYPE" "NPFFR2 WILD-TYPE" 
      TCGA-49-4488       TCGA-49-4490       TCGA-49-4494       TCGA-49-4501 
"NPFFR2 WILD-TYPE" "NPFFR2 WILD-TYPE" "NPFFR2 WILD-TYPE" "NPFFR2 WILD-TYPE" 
      TCGA-49-4505       TCGA-49-4506       TCGA-49-4507       TCGA-49-4510 
"NPFFR2 WILD-TYPE" "NPFFR2 WILD-TYPE" "NPFFR2 WILD-TYPE" "NPFFR2 WILD-TYPE" 
      TCGA-49-4512       TCGA-49-4514       TCGA-49-6742       TCGA-49-6743 
"NPFFR2 WILD-TYPE" "NPFFR2 WILD-TYPE" "NPFFR2 WILD-TYPE" "NPFFR2 WILD-TYPE" 
      TCGA-49-6744       TCGA-49-6745       TCGA-50-5044       TCGA-50-5045 
"NPFFR2 WILD-TYPE" "NPFFR2 WILD-TYPE" "NPFFR2 WILD-TYPE" "NPFFR2 WILD-TYPE" 
      TCGA-50-5049       TCGA-50-5051       TCGA-50-5055       TCGA-50-5066 
"NPFFR2 WILD-TYPE" "NPFFR2 WILD-TYPE" "NPFFR2 WILD-TYPE" "NPFFR2 WILD-TYPE" 
      TCGA-50-5068       TCGA-50-5072       TCGA-50-5930       TCGA-50-5931 
"NPFFR2 WILD-TYPE" "NPFFR2 WILD-TYPE" "NPFFR2 WILD-TYPE" "NPFFR2 WILD-TYPE" 
      TCGA-50-5932       TCGA-50-5933       TCGA-50-5935       TCGA-50-5936 
"NPFFR2 WILD-TYPE" "NPFFR2 WILD-TYPE" "NPFFR2 WILD-TYPE" "NPFFR2 WILD-TYPE" 
      TCGA-50-5939       TCGA-50-5941       TCGA-50-5942       TCGA-50-5944 
"NPFFR2 WILD-TYPE" "NPFFR2 WILD-TYPE" "NPFFR2 WILD-TYPE" "NPFFR2 WILD-TYPE" 
      TCGA-50-5946       TCGA-50-6590       TCGA-50-6591       TCGA-50-6592 
"NPFFR2 WILD-TYPE" "NPFFR2 WILD-TYPE" "NPFFR2 WILD-TYPE" "NPFFR2 WILD-TYPE" 
      TCGA-50-6593       TCGA-50-6594       TCGA-50-6595       TCGA-50-6597 
"NPFFR2 WILD-TYPE" "NPFFR2 WILD-TYPE" "NPFFR2 WILD-TYPE" "NPFFR2 WILD-TYPE" 
      TCGA-55-1592       TCGA-55-1594       TCGA-55-1595       TCGA-55-1596 
"NPFFR2 WILD-TYPE" "NPFFR2 WILD-TYPE" "NPFFR2 WILD-TYPE" "NPFFR2 WILD-TYPE" 
      TCGA-55-5899       TCGA-55-6543       TCGA-55-6642       TCGA-55-6712 
"NPFFR2 WILD-TYPE" "NPFFR2 WILD-TYPE" "NPFFR2 WILD-TYPE" "NPFFR2 WILD-TYPE" 
      TCGA-64-1676       TCGA-64-1677       TCGA-64-1678       TCGA-64-1680 
"NPFFR2 WILD-TYPE" "NPFFR2 WILD-TYPE" "NPFFR2 WILD-TYPE" "NPFFR2 WILD-TYPE" 
      TCGA-64-5774       TCGA-64-5775       TCGA-64-5778       TCGA-64-5779 
"NPFFR2 WILD-TYPE" "NPFFR2 WILD-TYPE" "NPFFR2 WILD-TYPE" "NPFFR2 WILD-TYPE" 
      TCGA-64-5781       TCGA-64-5815       TCGA-67-3770       TCGA-67-3771 
"NPFFR2 WILD-TYPE" "NPFFR2 WILD-TYPE" "NPFFR2 WILD-TYPE" "NPFFR2 WILD-TYPE" 
      TCGA-67-3772       TCGA-67-3773       TCGA-67-3774       TCGA-67-6215 
"NPFFR2 WILD-TYPE" "NPFFR2 WILD-TYPE"   "NPFFR2 MUTATED" "NPFFR2 WILD-TYPE" 
      TCGA-67-6216       TCGA-67-6217       TCGA-71-6725       TCGA-73-4658 
"NPFFR2 WILD-TYPE" "NPFFR2 WILD-TYPE" "NPFFR2 WILD-TYPE" "NPFFR2 WILD-TYPE" 
      TCGA-73-4659       TCGA-73-4662       TCGA-73-4666       TCGA-73-4668 
"NPFFR2 WILD-TYPE" "NPFFR2 WILD-TYPE"   "NPFFR2 MUTATED" "NPFFR2 WILD-TYPE" 
      TCGA-73-4670       TCGA-73-4675       TCGA-73-4676       TCGA-73-4677 
"NPFFR2 WILD-TYPE" "NPFFR2 WILD-TYPE" "NPFFR2 WILD-TYPE" "NPFFR2 WILD-TYPE" 
      TCGA-91-6828       TCGA-91-6829       TCGA-91-6831       TCGA-91-6835 
"NPFFR2 WILD-TYPE" "NPFFR2 WILD-TYPE" "NPFFR2 WILD-TYPE" "NPFFR2 WILD-TYPE" 
      TCGA-91-6836 
"NPFFR2 WILD-TYPE" 
[1] "hr="     "2.7e+07"
D114V2, continuous
D114V3, binary
[1] "tbl2"
                  cls
clus               [,1] [,2]
  NPFFR2 MUTATED      6    4
  NPFFR2 WILD-TYPE   87   75
        clus
vv       NPFFR2 MUTATED NPFFR2 WILD-TYPE
  FEMALE              6               87
  MALE                4               75
D114V4, continuous
[1] "Remove cluster labels:" "NPFFR2 MUTATED"        
clus
  NPFFR2 MUTATED NPFFR2 WILD-TYPE 
               1               11 
      TCGA-35-4122       TCGA-35-4123       TCGA-35-5375       TCGA-64-1677 
"NPFFR2 WILD-TYPE" "NPFFR2 WILD-TYPE" "NPFFR2 WILD-TYPE" "NPFFR2 WILD-TYPE" 
      TCGA-64-5778       TCGA-71-6725       TCGA-73-4659       TCGA-73-4662 
"NPFFR2 WILD-TYPE" "NPFFR2 WILD-TYPE" "NPFFR2 WILD-TYPE" "NPFFR2 WILD-TYPE" 
      TCGA-73-4668       TCGA-73-4676       TCGA-75-5122 
"NPFFR2 WILD-TYPE" "NPFFR2 WILD-TYPE" "NPFFR2 WILD-TYPE" 
D114V5, multiclass
D114V6, multiclass
    clus
vv   NPFFR2 MUTATED NPFFR2 WILD-TYPE
  T1              4               37
  T2              5              103
  T3              1               13
  T4              0                8
D114V7, multiclass
       clus
vv      NPFFR2 MUTATED NPFFR2 WILD-TYPE
  N0                 9               86
  N1                 0               37
  N2+N3              1               34
D114V8, multiclass
    clus
vv   NPFFR2 MUTATED NPFFR2 WILD-TYPE
  M0              7              130
  M1              1                8
  MX              2               20
D114V9, multiclass
     clus
vv    NPFFR2 MUTATED NPFFR2 WILD-TYPE
  I                8               80
  II               0               33
  III              1               38
  IV               1                8
D114V10, binary
[1] "tbl2"
                  cls
clus               [,1] [,2]
  NPFFR2 MUTATED      1    9
  NPFFR2 WILD-TYPE   15  147
     clus
vv    NPFFR2 MUTATED NPFFR2 WILD-TYPE
  NO               1               15
  YES              9              147
D114V11, continuous
D114V12, continuous
D114V13, multiclass
                                             clus
vv                                            NPFFR2 MUTATED NPFFR2 WILD-TYPE
  CURRENT REFORMED SMOKER FOR < OR = 15 YEARS              6               56
  CURRENT REFORMED SMOKER FOR > 15 YEARS                   3               43
  CURRENT SMOKER                                           0               28
  LIFELONG NON-SMOKER                                      1               23
D114V14, continuous

Clustering(115) Variable = OR2M4 MUTATION ANALYSIS
D115V1, survival
                 sevent
clus2              0  1
  OR2M4 MUTATED    8  3
  OR2M4 WILD-TYPE 91 47
  OR2M4 MUTATED OR2M4 WILD-TYPE 
             11             138 
  OR2M4 MUTATED OR2M4 WILD-TYPE 
              3              47 
$`OR2M4 MUTATED`
TCGA-05-4432 TCGA-35-4122 TCGA-44-2662 TCGA-44-6147 TCGA-49-6742 TCGA-50-6590 
       25.02         7.36        15.78         7.76        15.02        42.31 
TCGA-64-1677 TCGA-64-5781 TCGA-73-4662 TCGA-73-4666 TCGA-73-4677 
       20.65        39.52        29.95        20.28         1.25 

$`OR2M4 WILD-TYPE`
TCGA-05-4249 TCGA-05-4250 TCGA-05-4382 TCGA-05-4384 TCGA-05-4390 TCGA-05-4396 
       38.07         3.98        19.92        14.01        37.02         9.96 
TCGA-05-4397 TCGA-05-4398 TCGA-05-4402 TCGA-05-4405 TCGA-05-4415 TCGA-05-4417 
       24.03        47.05         8.02        20.05         2.96        14.93 
TCGA-05-4418 TCGA-05-4420 TCGA-05-4424 TCGA-05-4426 TCGA-05-4427 TCGA-05-4430 
        8.98        29.95        30.02        26.01        26.01        25.02 
TCGA-05-4433 TCGA-05-4434 TCGA-05-5420 TCGA-05-5423 TCGA-05-5425 TCGA-05-5429 
       24.00        15.02         1.02         4.96         2.96         0.99 
TCGA-05-5715 TCGA-35-3615 TCGA-35-4123 TCGA-35-5375 TCGA-38-4625 TCGA-38-4626 
        2.04         0.46         5.95         8.68        47.61        85.32 
TCGA-38-4627 TCGA-38-4628 TCGA-38-4629 TCGA-38-4630 TCGA-38-4631 TCGA-38-4632 
       37.71        49.02        28.37        35.28        11.64        44.61 
TCGA-38-6178 TCGA-44-2655 TCGA-44-2656 TCGA-44-2657 TCGA-44-2659 TCGA-44-2661 
        5.19        18.87        19.10        13.15        17.39         3.39 
TCGA-44-2665 TCGA-44-2666 TCGA-44-2668 TCGA-44-3396 TCGA-44-3398 TCGA-44-3918 
       13.15         3.19         8.09        10.22         8.32         6.44 
TCGA-44-3919 TCGA-44-4112 TCGA-44-5643 TCGA-44-5645 TCGA-44-6144 TCGA-44-6145 
        6.21         4.60         3.48         6.84         0.30         3.35 
TCGA-44-6146 TCGA-44-6148 TCGA-44-6774 TCGA-44-6775 TCGA-44-6776 TCGA-44-6777 
        9.93         3.12         5.42         2.70        63.72        32.45 
TCGA-44-6778 TCGA-44-6779 TCGA-49-4486 TCGA-49-4487 TCGA-49-4488 TCGA-49-4490 
       36.49        16.41        76.21        28.11        28.57        12.66 
TCGA-49-4494 TCGA-49-4501 TCGA-49-4505 TCGA-49-4506 TCGA-49-4507 TCGA-49-4510 
       35.54        46.72        14.07        32.84         8.81        29.46 
TCGA-49-4512 TCGA-49-4514 TCGA-49-6743 TCGA-49-6744 TCGA-49-6745 TCGA-50-5044 
       29.75        43.20        12.13        12.99         4.93        20.48 
TCGA-50-5045 TCGA-50-5049 TCGA-50-5051 TCGA-50-5055 TCGA-50-5066 TCGA-50-5068 
       71.47        48.82        14.96        25.81         9.76        49.28 
TCGA-50-5072 TCGA-50-5930 TCGA-50-5931 TCGA-50-5932 TCGA-50-5933 TCGA-50-5935 
        8.05         9.27         8.78        35.87        77.88        21.47 
TCGA-50-5936 TCGA-50-5939 TCGA-50-5941 TCGA-50-5942 TCGA-50-5944 TCGA-50-5946 
        8.45        15.12         9.37         4.44        12.26        11.47 
TCGA-50-6591 TCGA-50-6592 TCGA-50-6593 TCGA-50-6594 TCGA-50-6595 TCGA-50-6597 
        3.88        25.51        11.05        12.16         6.21        33.37 
TCGA-55-1592 TCGA-55-1594 TCGA-55-1595 TCGA-55-1596 TCGA-55-5899 TCGA-55-6543 
       23.05        38.73        48.62        45.17         2.86         0.07 
TCGA-55-6642 TCGA-55-6712 TCGA-64-1676 TCGA-64-1678 TCGA-64-1680 TCGA-64-5774 
       32.61         0.79        56.81        39.09        37.02        83.84 
TCGA-64-5775 TCGA-64-5778 TCGA-64-5779 TCGA-64-5815 TCGA-67-3770 TCGA-67-3771 
        0.10        30.44        16.67         7.33         0.99         1.97 
TCGA-67-3772 TCGA-67-3773 TCGA-67-3774 TCGA-67-6215 TCGA-67-6216 TCGA-67-6217 
        0.59         2.04         0.59         0.89         0.69        13.87 
TCGA-71-6725 TCGA-73-4658 TCGA-73-4659 TCGA-73-4668 TCGA-73-4670 TCGA-73-4675 
        2.01        52.57        23.38        15.35         0.46         1.32 
TCGA-73-4676 TCGA-91-6828 TCGA-91-6829 TCGA-91-6831 TCGA-91-6835 TCGA-91-6836 
        4.01         1.22        41.33         1.28         1.15         0.36 

  OR2M4 MUTATED OR2M4 WILD-TYPE 
           1.25            0.07 
  OR2M4 MUTATED OR2M4 WILD-TYPE 
          42.31           85.32 
  OR2M4 MUTATED OR2M4 WILD-TYPE 
          20.28           13.07 
[1] "1.2 - 42.3 (20.3)" "0.1 - 85.3 (13.1)"
     TCGA-05-4249      TCGA-05-4250      TCGA-05-4382      TCGA-05-4384 
"OR2M4 WILD-TYPE" "OR2M4 WILD-TYPE" "OR2M4 WILD-TYPE" "OR2M4 WILD-TYPE" 
     TCGA-05-4390      TCGA-05-4396      TCGA-05-4397      TCGA-05-4398 
"OR2M4 WILD-TYPE" "OR2M4 WILD-TYPE" "OR2M4 WILD-TYPE" "OR2M4 WILD-TYPE" 
     TCGA-05-4402      TCGA-05-4405      TCGA-05-4415      TCGA-05-4417 
"OR2M4 WILD-TYPE" "OR2M4 WILD-TYPE" "OR2M4 WILD-TYPE" "OR2M4 WILD-TYPE" 
     TCGA-05-4418      TCGA-05-4420      TCGA-05-4424      TCGA-05-4426 
"OR2M4 WILD-TYPE" "OR2M4 WILD-TYPE" "OR2M4 WILD-TYPE" "OR2M4 WILD-TYPE" 
     TCGA-05-4427      TCGA-05-4430      TCGA-05-4432      TCGA-05-4433 
"OR2M4 WILD-TYPE" "OR2M4 WILD-TYPE"   "OR2M4 MUTATED" "OR2M4 WILD-TYPE" 
     TCGA-05-4434      TCGA-05-5420      TCGA-05-5423      TCGA-05-5425 
"OR2M4 WILD-TYPE" "OR2M4 WILD-TYPE" "OR2M4 WILD-TYPE" "OR2M4 WILD-TYPE" 
     TCGA-05-5429      TCGA-05-5715      TCGA-35-3615      TCGA-35-4122 
"OR2M4 WILD-TYPE" "OR2M4 WILD-TYPE" "OR2M4 WILD-TYPE"   "OR2M4 MUTATED" 
     TCGA-35-4123      TCGA-35-5375      TCGA-38-4625      TCGA-38-4626 
"OR2M4 WILD-TYPE" "OR2M4 WILD-TYPE" "OR2M4 WILD-TYPE" "OR2M4 WILD-TYPE" 
     TCGA-38-4627      TCGA-38-4628      TCGA-38-4629      TCGA-38-4630 
"OR2M4 WILD-TYPE" "OR2M4 WILD-TYPE" "OR2M4 WILD-TYPE" "OR2M4 WILD-TYPE" 
     TCGA-38-4631      TCGA-38-4632      TCGA-38-6178      TCGA-44-2655 
"OR2M4 WILD-TYPE" "OR2M4 WILD-TYPE" "OR2M4 WILD-TYPE" "OR2M4 WILD-TYPE" 
     TCGA-44-2656      TCGA-44-2657      TCGA-44-2659      TCGA-44-2661 
"OR2M4 WILD-TYPE" "OR2M4 WILD-TYPE" "OR2M4 WILD-TYPE" "OR2M4 WILD-TYPE" 
     TCGA-44-2662      TCGA-44-2665      TCGA-44-2666      TCGA-44-2668 
  "OR2M4 MUTATED" "OR2M4 WILD-TYPE" "OR2M4 WILD-TYPE" "OR2M4 WILD-TYPE" 
     TCGA-44-3396      TCGA-44-3398      TCGA-44-3918      TCGA-44-3919 
"OR2M4 WILD-TYPE" "OR2M4 WILD-TYPE" "OR2M4 WILD-TYPE" "OR2M4 WILD-TYPE" 
     TCGA-44-4112      TCGA-44-5643      TCGA-44-5645      TCGA-44-6144 
"OR2M4 WILD-TYPE" "OR2M4 WILD-TYPE" "OR2M4 WILD-TYPE" "OR2M4 WILD-TYPE" 
     TCGA-44-6145      TCGA-44-6146      TCGA-44-6147      TCGA-44-6148 
"OR2M4 WILD-TYPE" "OR2M4 WILD-TYPE"   "OR2M4 MUTATED" "OR2M4 WILD-TYPE" 
     TCGA-44-6774      TCGA-44-6775      TCGA-44-6776      TCGA-44-6777 
"OR2M4 WILD-TYPE" "OR2M4 WILD-TYPE" "OR2M4 WILD-TYPE" "OR2M4 WILD-TYPE" 
     TCGA-44-6778      TCGA-44-6779      TCGA-49-4486      TCGA-49-4487 
"OR2M4 WILD-TYPE" "OR2M4 WILD-TYPE" "OR2M4 WILD-TYPE" "OR2M4 WILD-TYPE" 
     TCGA-49-4488      TCGA-49-4490      TCGA-49-4494      TCGA-49-4501 
"OR2M4 WILD-TYPE" "OR2M4 WILD-TYPE" "OR2M4 WILD-TYPE" "OR2M4 WILD-TYPE" 
     TCGA-49-4505      TCGA-49-4506      TCGA-49-4507      TCGA-49-4510 
"OR2M4 WILD-TYPE" "OR2M4 WILD-TYPE" "OR2M4 WILD-TYPE" "OR2M4 WILD-TYPE" 
     TCGA-49-4512      TCGA-49-4514      TCGA-49-6742      TCGA-49-6743 
"OR2M4 WILD-TYPE" "OR2M4 WILD-TYPE"   "OR2M4 MUTATED" "OR2M4 WILD-TYPE" 
     TCGA-49-6744      TCGA-49-6745      TCGA-50-5044      TCGA-50-5045 
"OR2M4 WILD-TYPE" "OR2M4 WILD-TYPE" "OR2M4 WILD-TYPE" "OR2M4 WILD-TYPE" 
     TCGA-50-5049      TCGA-50-5051      TCGA-50-5055      TCGA-50-5066 
"OR2M4 WILD-TYPE" "OR2M4 WILD-TYPE" "OR2M4 WILD-TYPE" "OR2M4 WILD-TYPE" 
     TCGA-50-5068      TCGA-50-5072      TCGA-50-5930      TCGA-50-5931 
"OR2M4 WILD-TYPE" "OR2M4 WILD-TYPE" "OR2M4 WILD-TYPE" "OR2M4 WILD-TYPE" 
     TCGA-50-5932      TCGA-50-5933      TCGA-50-5935      TCGA-50-5936 
"OR2M4 WILD-TYPE" "OR2M4 WILD-TYPE" "OR2M4 WILD-TYPE" "OR2M4 WILD-TYPE" 
     TCGA-50-5939      TCGA-50-5941      TCGA-50-5942      TCGA-50-5944 
"OR2M4 WILD-TYPE" "OR2M4 WILD-TYPE" "OR2M4 WILD-TYPE" "OR2M4 WILD-TYPE" 
     TCGA-50-5946      TCGA-50-6590      TCGA-50-6591      TCGA-50-6592 
"OR2M4 WILD-TYPE"   "OR2M4 MUTATED" "OR2M4 WILD-TYPE" "OR2M4 WILD-TYPE" 
     TCGA-50-6593      TCGA-50-6594      TCGA-50-6595      TCGA-50-6597 
"OR2M4 WILD-TYPE" "OR2M4 WILD-TYPE" "OR2M4 WILD-TYPE" "OR2M4 WILD-TYPE" 
     TCGA-55-1592      TCGA-55-1594      TCGA-55-1595      TCGA-55-1596 
"OR2M4 WILD-TYPE" "OR2M4 WILD-TYPE" "OR2M4 WILD-TYPE" "OR2M4 WILD-TYPE" 
     TCGA-55-5899      TCGA-55-6543      TCGA-55-6642      TCGA-55-6712 
"OR2M4 WILD-TYPE" "OR2M4 WILD-TYPE" "OR2M4 WILD-TYPE" "OR2M4 WILD-TYPE" 
     TCGA-64-1676      TCGA-64-1677      TCGA-64-1678      TCGA-64-1680 
"OR2M4 WILD-TYPE"   "OR2M4 MUTATED" "OR2M4 WILD-TYPE" "OR2M4 WILD-TYPE" 
     TCGA-64-5774      TCGA-64-5775      TCGA-64-5778      TCGA-64-5779 
"OR2M4 WILD-TYPE" "OR2M4 WILD-TYPE" "OR2M4 WILD-TYPE" "OR2M4 WILD-TYPE" 
     TCGA-64-5781      TCGA-64-5815      TCGA-67-3770      TCGA-67-3771 
  "OR2M4 MUTATED" "OR2M4 WILD-TYPE" "OR2M4 WILD-TYPE" "OR2M4 WILD-TYPE" 
     TCGA-67-3772      TCGA-67-3773      TCGA-67-3774      TCGA-67-6215 
"OR2M4 WILD-TYPE" "OR2M4 WILD-TYPE" "OR2M4 WILD-TYPE" "OR2M4 WILD-TYPE" 
     TCGA-67-6216      TCGA-67-6217      TCGA-71-6725      TCGA-73-4658 
"OR2M4 WILD-TYPE" "OR2M4 WILD-TYPE" "OR2M4 WILD-TYPE" "OR2M4 WILD-TYPE" 
     TCGA-73-4659      TCGA-73-4662      TCGA-73-4666      TCGA-73-4668 
"OR2M4 WILD-TYPE"   "OR2M4 MUTATED"   "OR2M4 MUTATED" "OR2M4 WILD-TYPE" 
     TCGA-73-4670      TCGA-73-4675      TCGA-73-4676      TCGA-73-4677 
"OR2M4 WILD-TYPE" "OR2M4 WILD-TYPE" "OR2M4 WILD-TYPE"   "OR2M4 MUTATED" 
     TCGA-91-6828      TCGA-91-6829      TCGA-91-6831      TCGA-91-6835 
"OR2M4 WILD-TYPE" "OR2M4 WILD-TYPE" "OR2M4 WILD-TYPE" "OR2M4 WILD-TYPE" 
     TCGA-91-6836 
"OR2M4 WILD-TYPE" 
     TCGA-05-4249      TCGA-05-4250      TCGA-05-4382      TCGA-05-4384 
"OR2M4 WILD-TYPE" "OR2M4 WILD-TYPE" "OR2M4 WILD-TYPE" "OR2M4 WILD-TYPE" 
     TCGA-05-4390      TCGA-05-4396      TCGA-05-4397      TCGA-05-4398 
"OR2M4 WILD-TYPE" "OR2M4 WILD-TYPE" "OR2M4 WILD-TYPE" "OR2M4 WILD-TYPE" 
     TCGA-05-4402      TCGA-05-4405      TCGA-05-4415      TCGA-05-4417 
"OR2M4 WILD-TYPE" "OR2M4 WILD-TYPE" "OR2M4 WILD-TYPE" "OR2M4 WILD-TYPE" 
     TCGA-05-4418      TCGA-05-4420      TCGA-05-4424      TCGA-05-4426 
"OR2M4 WILD-TYPE" "OR2M4 WILD-TYPE" "OR2M4 WILD-TYPE" "OR2M4 WILD-TYPE" 
     TCGA-05-4427      TCGA-05-4430      TCGA-05-4432      TCGA-05-4433 
"OR2M4 WILD-TYPE" "OR2M4 WILD-TYPE"   "OR2M4 MUTATED" "OR2M4 WILD-TYPE" 
     TCGA-05-4434      TCGA-05-5420      TCGA-05-5423      TCGA-05-5425 
"OR2M4 WILD-TYPE" "OR2M4 WILD-TYPE" "OR2M4 WILD-TYPE" "OR2M4 WILD-TYPE" 
     TCGA-05-5429      TCGA-05-5715      TCGA-35-3615      TCGA-35-4122 
"OR2M4 WILD-TYPE" "OR2M4 WILD-TYPE" "OR2M4 WILD-TYPE"   "OR2M4 MUTATED" 
     TCGA-35-4123      TCGA-35-5375      TCGA-38-4625      TCGA-38-4626 
"OR2M4 WILD-TYPE" "OR2M4 WILD-TYPE" "OR2M4 WILD-TYPE" "OR2M4 WILD-TYPE" 
     TCGA-38-4627      TCGA-38-4628      TCGA-38-4629      TCGA-38-4630 
"OR2M4 WILD-TYPE" "OR2M4 WILD-TYPE" "OR2M4 WILD-TYPE" "OR2M4 WILD-TYPE" 
     TCGA-38-4631      TCGA-38-4632      TCGA-38-6178      TCGA-44-2655 
"OR2M4 WILD-TYPE" "OR2M4 WILD-TYPE" "OR2M4 WILD-TYPE" "OR2M4 WILD-TYPE" 
     TCGA-44-2656      TCGA-44-2657      TCGA-44-2659      TCGA-44-2661 
"OR2M4 WILD-TYPE" "OR2M4 WILD-TYPE" "OR2M4 WILD-TYPE" "OR2M4 WILD-TYPE" 
     TCGA-44-2662      TCGA-44-2665      TCGA-44-2666      TCGA-44-2668 
  "OR2M4 MUTATED" "OR2M4 WILD-TYPE" "OR2M4 WILD-TYPE" "OR2M4 WILD-TYPE" 
     TCGA-44-3396      TCGA-44-3398      TCGA-44-3918      TCGA-44-3919 
"OR2M4 WILD-TYPE" "OR2M4 WILD-TYPE" "OR2M4 WILD-TYPE" "OR2M4 WILD-TYPE" 
     TCGA-44-4112      TCGA-44-5643      TCGA-44-5645      TCGA-44-6144 
"OR2M4 WILD-TYPE" "OR2M4 WILD-TYPE" "OR2M4 WILD-TYPE" "OR2M4 WILD-TYPE" 
     TCGA-44-6145      TCGA-44-6146      TCGA-44-6147      TCGA-44-6148 
"OR2M4 WILD-TYPE" "OR2M4 WILD-TYPE"   "OR2M4 MUTATED" "OR2M4 WILD-TYPE" 
     TCGA-44-6774      TCGA-44-6775      TCGA-44-6776      TCGA-44-6777 
"OR2M4 WILD-TYPE" "OR2M4 WILD-TYPE" "OR2M4 WILD-TYPE" "OR2M4 WILD-TYPE" 
     TCGA-44-6778      TCGA-44-6779      TCGA-49-4486      TCGA-49-4487 
"OR2M4 WILD-TYPE" "OR2M4 WILD-TYPE" "OR2M4 WILD-TYPE" "OR2M4 WILD-TYPE" 
     TCGA-49-4488      TCGA-49-4490      TCGA-49-4494      TCGA-49-4501 
"OR2M4 WILD-TYPE" "OR2M4 WILD-TYPE" "OR2M4 WILD-TYPE" "OR2M4 WILD-TYPE" 
     TCGA-49-4505      TCGA-49-4506      TCGA-49-4507      TCGA-49-4510 
"OR2M4 WILD-TYPE" "OR2M4 WILD-TYPE" "OR2M4 WILD-TYPE" "OR2M4 WILD-TYPE" 
     TCGA-49-4512      TCGA-49-4514      TCGA-49-6742      TCGA-49-6743 
"OR2M4 WILD-TYPE" "OR2M4 WILD-TYPE"   "OR2M4 MUTATED" "OR2M4 WILD-TYPE" 
     TCGA-49-6744      TCGA-49-6745      TCGA-50-5044      TCGA-50-5045 
"OR2M4 WILD-TYPE" "OR2M4 WILD-TYPE" "OR2M4 WILD-TYPE" "OR2M4 WILD-TYPE" 
     TCGA-50-5049      TCGA-50-5051      TCGA-50-5055      TCGA-50-5066 
"OR2M4 WILD-TYPE" "OR2M4 WILD-TYPE" "OR2M4 WILD-TYPE" "OR2M4 WILD-TYPE" 
     TCGA-50-5068      TCGA-50-5072      TCGA-50-5930      TCGA-50-5931 
"OR2M4 WILD-TYPE" "OR2M4 WILD-TYPE" "OR2M4 WILD-TYPE" "OR2M4 WILD-TYPE" 
     TCGA-50-5932      TCGA-50-5933      TCGA-50-5935      TCGA-50-5936 
"OR2M4 WILD-TYPE" "OR2M4 WILD-TYPE" "OR2M4 WILD-TYPE" "OR2M4 WILD-TYPE" 
     TCGA-50-5939      TCGA-50-5941      TCGA-50-5942      TCGA-50-5944 
"OR2M4 WILD-TYPE" "OR2M4 WILD-TYPE" "OR2M4 WILD-TYPE" "OR2M4 WILD-TYPE" 
     TCGA-50-5946      TCGA-50-6590      TCGA-50-6591      TCGA-50-6592 
"OR2M4 WILD-TYPE"   "OR2M4 MUTATED" "OR2M4 WILD-TYPE" "OR2M4 WILD-TYPE" 
     TCGA-50-6593      TCGA-50-6594      TCGA-50-6595      TCGA-50-6597 
"OR2M4 WILD-TYPE" "OR2M4 WILD-TYPE" "OR2M4 WILD-TYPE" "OR2M4 WILD-TYPE" 
     TCGA-55-1592      TCGA-55-1594      TCGA-55-1595      TCGA-55-1596 
"OR2M4 WILD-TYPE" "OR2M4 WILD-TYPE" "OR2M4 WILD-TYPE" "OR2M4 WILD-TYPE" 
     TCGA-55-5899      TCGA-55-6543      TCGA-55-6642      TCGA-55-6712 
"OR2M4 WILD-TYPE" "OR2M4 WILD-TYPE" "OR2M4 WILD-TYPE" "OR2M4 WILD-TYPE" 
     TCGA-64-1676      TCGA-64-1677      TCGA-64-1678      TCGA-64-1680 
"OR2M4 WILD-TYPE"   "OR2M4 MUTATED" "OR2M4 WILD-TYPE" "OR2M4 WILD-TYPE" 
     TCGA-64-5774      TCGA-64-5775      TCGA-64-5778      TCGA-64-5779 
"OR2M4 WILD-TYPE" "OR2M4 WILD-TYPE" "OR2M4 WILD-TYPE" "OR2M4 WILD-TYPE" 
     TCGA-64-5781      TCGA-64-5815      TCGA-67-3770      TCGA-67-3771 
  "OR2M4 MUTATED" "OR2M4 WILD-TYPE" "OR2M4 WILD-TYPE" "OR2M4 WILD-TYPE" 
     TCGA-67-3772      TCGA-67-3773      TCGA-67-3774      TCGA-67-6215 
"OR2M4 WILD-TYPE" "OR2M4 WILD-TYPE" "OR2M4 WILD-TYPE" "OR2M4 WILD-TYPE" 
     TCGA-67-6216      TCGA-67-6217      TCGA-71-6725      TCGA-73-4658 
"OR2M4 WILD-TYPE" "OR2M4 WILD-TYPE" "OR2M4 WILD-TYPE" "OR2M4 WILD-TYPE" 
     TCGA-73-4659      TCGA-73-4662      TCGA-73-4666      TCGA-73-4668 
"OR2M4 WILD-TYPE"   "OR2M4 MUTATED"   "OR2M4 MUTATED" "OR2M4 WILD-TYPE" 
     TCGA-73-4670      TCGA-73-4675      TCGA-73-4676      TCGA-73-4677 
"OR2M4 WILD-TYPE" "OR2M4 WILD-TYPE" "OR2M4 WILD-TYPE"   "OR2M4 MUTATED" 
     TCGA-91-6828      TCGA-91-6829      TCGA-91-6831      TCGA-91-6835 
"OR2M4 WILD-TYPE" "OR2M4 WILD-TYPE" "OR2M4 WILD-TYPE" "OR2M4 WILD-TYPE" 
     TCGA-91-6836 
"OR2M4 WILD-TYPE" 
     TCGA-05-4249      TCGA-05-4250      TCGA-05-4382      TCGA-05-4384 
"OR2M4 WILD-TYPE" "OR2M4 WILD-TYPE" "OR2M4 WILD-TYPE" "OR2M4 WILD-TYPE" 
     TCGA-05-4390      TCGA-05-4396      TCGA-05-4397      TCGA-05-4398 
"OR2M4 WILD-TYPE" "OR2M4 WILD-TYPE" "OR2M4 WILD-TYPE" "OR2M4 WILD-TYPE" 
     TCGA-05-4402      TCGA-05-4405      TCGA-05-4415      TCGA-05-4417 
"OR2M4 WILD-TYPE" "OR2M4 WILD-TYPE" "OR2M4 WILD-TYPE" "OR2M4 WILD-TYPE" 
     TCGA-05-4418      TCGA-05-4420      TCGA-05-4424      TCGA-05-4426 
"OR2M4 WILD-TYPE" "OR2M4 WILD-TYPE" "OR2M4 WILD-TYPE" "OR2M4 WILD-TYPE" 
     TCGA-05-4427      TCGA-05-4430      TCGA-05-4432      TCGA-05-4433 
"OR2M4 WILD-TYPE" "OR2M4 WILD-TYPE"   "OR2M4 MUTATED" "OR2M4 WILD-TYPE" 
     TCGA-05-4434      TCGA-05-5420      TCGA-05-5423      TCGA-05-5425 
"OR2M4 WILD-TYPE" "OR2M4 WILD-TYPE" "OR2M4 WILD-TYPE" "OR2M4 WILD-TYPE" 
     TCGA-05-5429      TCGA-05-5715      TCGA-35-3615      TCGA-35-4122 
"OR2M4 WILD-TYPE" "OR2M4 WILD-TYPE" "OR2M4 WILD-TYPE"   "OR2M4 MUTATED" 
     TCGA-35-4123      TCGA-35-5375      TCGA-38-4625      TCGA-38-4626 
"OR2M4 WILD-TYPE" "OR2M4 WILD-TYPE" "OR2M4 WILD-TYPE" "OR2M4 WILD-TYPE" 
     TCGA-38-4627      TCGA-38-4628      TCGA-38-4629      TCGA-38-4630 
"OR2M4 WILD-TYPE" "OR2M4 WILD-TYPE" "OR2M4 WILD-TYPE" "OR2M4 WILD-TYPE" 
     TCGA-38-4631      TCGA-38-4632      TCGA-38-6178      TCGA-44-2655 
"OR2M4 WILD-TYPE" "OR2M4 WILD-TYPE" "OR2M4 WILD-TYPE" "OR2M4 WILD-TYPE" 
     TCGA-44-2656      TCGA-44-2657      TCGA-44-2659      TCGA-44-2661 
"OR2M4 WILD-TYPE" "OR2M4 WILD-TYPE" "OR2M4 WILD-TYPE" "OR2M4 WILD-TYPE" 
     TCGA-44-2662      TCGA-44-2665      TCGA-44-2666      TCGA-44-2668 
  "OR2M4 MUTATED" "OR2M4 WILD-TYPE" "OR2M4 WILD-TYPE" "OR2M4 WILD-TYPE" 
     TCGA-44-3396      TCGA-44-3398      TCGA-44-3918      TCGA-44-3919 
"OR2M4 WILD-TYPE" "OR2M4 WILD-TYPE" "OR2M4 WILD-TYPE" "OR2M4 WILD-TYPE" 
     TCGA-44-4112      TCGA-44-5643      TCGA-44-5645      TCGA-44-6144 
"OR2M4 WILD-TYPE" "OR2M4 WILD-TYPE" "OR2M4 WILD-TYPE" "OR2M4 WILD-TYPE" 
     TCGA-44-6145      TCGA-44-6146      TCGA-44-6147      TCGA-44-6148 
"OR2M4 WILD-TYPE" "OR2M4 WILD-TYPE"   "OR2M4 MUTATED" "OR2M4 WILD-TYPE" 
     TCGA-44-6774      TCGA-44-6775      TCGA-44-6776      TCGA-44-6777 
"OR2M4 WILD-TYPE" "OR2M4 WILD-TYPE" "OR2M4 WILD-TYPE" "OR2M4 WILD-TYPE" 
     TCGA-44-6778      TCGA-44-6779      TCGA-49-4486      TCGA-49-4487 
"OR2M4 WILD-TYPE" "OR2M4 WILD-TYPE" "OR2M4 WILD-TYPE" "OR2M4 WILD-TYPE" 
     TCGA-49-4488      TCGA-49-4490      TCGA-49-4494      TCGA-49-4501 
"OR2M4 WILD-TYPE" "OR2M4 WILD-TYPE" "OR2M4 WILD-TYPE" "OR2M4 WILD-TYPE" 
     TCGA-49-4505      TCGA-49-4506      TCGA-49-4507      TCGA-49-4510 
"OR2M4 WILD-TYPE" "OR2M4 WILD-TYPE" "OR2M4 WILD-TYPE" "OR2M4 WILD-TYPE" 
     TCGA-49-4512      TCGA-49-4514      TCGA-49-6742      TCGA-49-6743 
"OR2M4 WILD-TYPE" "OR2M4 WILD-TYPE"   "OR2M4 MUTATED" "OR2M4 WILD-TYPE" 
     TCGA-49-6744      TCGA-49-6745      TCGA-50-5044      TCGA-50-5045 
"OR2M4 WILD-TYPE" "OR2M4 WILD-TYPE" "OR2M4 WILD-TYPE" "OR2M4 WILD-TYPE" 
     TCGA-50-5049      TCGA-50-5051      TCGA-50-5055      TCGA-50-5066 
"OR2M4 WILD-TYPE" "OR2M4 WILD-TYPE" "OR2M4 WILD-TYPE" "OR2M4 WILD-TYPE" 
     TCGA-50-5068      TCGA-50-5072      TCGA-50-5930      TCGA-50-5931 
"OR2M4 WILD-TYPE" "OR2M4 WILD-TYPE" "OR2M4 WILD-TYPE" "OR2M4 WILD-TYPE" 
     TCGA-50-5932      TCGA-50-5933      TCGA-50-5935      TCGA-50-5936 
"OR2M4 WILD-TYPE" "OR2M4 WILD-TYPE" "OR2M4 WILD-TYPE" "OR2M4 WILD-TYPE" 
     TCGA-50-5939      TCGA-50-5941      TCGA-50-5942      TCGA-50-5944 
"OR2M4 WILD-TYPE" "OR2M4 WILD-TYPE" "OR2M4 WILD-TYPE" "OR2M4 WILD-TYPE" 
     TCGA-50-5946      TCGA-50-6590      TCGA-50-6591      TCGA-50-6592 
"OR2M4 WILD-TYPE"   "OR2M4 MUTATED" "OR2M4 WILD-TYPE" "OR2M4 WILD-TYPE" 
     TCGA-50-6593      TCGA-50-6594      TCGA-50-6595      TCGA-50-6597 
"OR2M4 WILD-TYPE" "OR2M4 WILD-TYPE" "OR2M4 WILD-TYPE" "OR2M4 WILD-TYPE" 
     TCGA-55-1592      TCGA-55-1594      TCGA-55-1595      TCGA-55-1596 
"OR2M4 WILD-TYPE" "OR2M4 WILD-TYPE" "OR2M4 WILD-TYPE" "OR2M4 WILD-TYPE" 
     TCGA-55-5899      TCGA-55-6543      TCGA-55-6642      TCGA-55-6712 
"OR2M4 WILD-TYPE" "OR2M4 WILD-TYPE" "OR2M4 WILD-TYPE" "OR2M4 WILD-TYPE" 
     TCGA-64-1676      TCGA-64-1677      TCGA-64-1678      TCGA-64-1680 
"OR2M4 WILD-TYPE"   "OR2M4 MUTATED" "OR2M4 WILD-TYPE" "OR2M4 WILD-TYPE" 
     TCGA-64-5774      TCGA-64-5775      TCGA-64-5778      TCGA-64-5779 
"OR2M4 WILD-TYPE" "OR2M4 WILD-TYPE" "OR2M4 WILD-TYPE" "OR2M4 WILD-TYPE" 
     TCGA-64-5781      TCGA-64-5815      TCGA-67-3770      TCGA-67-3771 
  "OR2M4 MUTATED" "OR2M4 WILD-TYPE" "OR2M4 WILD-TYPE" "OR2M4 WILD-TYPE" 
     TCGA-67-3772      TCGA-67-3773      TCGA-67-3774      TCGA-67-6215 
"OR2M4 WILD-TYPE" "OR2M4 WILD-TYPE" "OR2M4 WILD-TYPE" "OR2M4 WILD-TYPE" 
     TCGA-67-6216      TCGA-67-6217      TCGA-71-6725      TCGA-73-4658 
"OR2M4 WILD-TYPE" "OR2M4 WILD-TYPE" "OR2M4 WILD-TYPE" "OR2M4 WILD-TYPE" 
     TCGA-73-4659      TCGA-73-4662      TCGA-73-4666      TCGA-73-4668 
"OR2M4 WILD-TYPE"   "OR2M4 MUTATED"   "OR2M4 MUTATED" "OR2M4 WILD-TYPE" 
     TCGA-73-4670      TCGA-73-4675      TCGA-73-4676      TCGA-73-4677 
"OR2M4 WILD-TYPE" "OR2M4 WILD-TYPE" "OR2M4 WILD-TYPE"   "OR2M4 MUTATED" 
     TCGA-91-6828      TCGA-91-6829      TCGA-91-6831      TCGA-91-6835 
"OR2M4 WILD-TYPE" "OR2M4 WILD-TYPE" "OR2M4 WILD-TYPE" "OR2M4 WILD-TYPE" 
     TCGA-91-6836 
"OR2M4 WILD-TYPE" 
[1] "hr=" "1.1"
D115V2, continuous
D115V3, binary
[1] "tbl2"
                 cls
clus              [,1] [,2]
  OR2M4 MUTATED      6    5
  OR2M4 WILD-TYPE   87   74
        clus
vv       OR2M4 MUTATED OR2M4 WILD-TYPE
  FEMALE             6              87
  MALE               5              74
D115V4, continuous
D115V5, multiclass
D115V6, multiclass
    clus
vv   OR2M4 MUTATED OR2M4 WILD-TYPE
  T1             4              37
  T2             7             101
  T3             0              14
  T4             0               8
D115V7, multiclass
       clus
vv      OR2M4 MUTATED OR2M4 WILD-TYPE
  N0                7              88
  N1                2              35
  N2+N3             1              34
D115V8, multiclass
    clus
vv   OR2M4 MUTATED OR2M4 WILD-TYPE
  M0             9             128
  M1             1               8
  MX             1              21
D115V9, multiclass
     clus
vv    OR2M4 MUTATED OR2M4 WILD-TYPE
  I               7              81
  II              2              31
  III             1              38
  IV              1               8
D115V10, binary
[1] "tbl2"
                 cls
clus              [,1] [,2]
  OR2M4 MUTATED      2    9
  OR2M4 WILD-TYPE   14  147
     clus
vv    OR2M4 MUTATED OR2M4 WILD-TYPE
  NO              2              14
  YES             9             147
D115V11, continuous
D115V12, continuous
D115V13, multiclass
                                             clus
vv                                            OR2M4 MUTATED OR2M4 WILD-TYPE
  CURRENT REFORMED SMOKER FOR < OR = 15 YEARS             4              58
  CURRENT REFORMED SMOKER FOR > 15 YEARS                  5              41
  CURRENT SMOKER                                          2              26
  LIFELONG NON-SMOKER                                     0              24
D115V14, continuous

Clustering(116) Variable = NRXN1 MUTATION ANALYSIS
D116V1, survival
                 sevent
clus2              0  1
  NRXN1 MUTATED   16  7
  NRXN1 WILD-TYPE 83 43
  NRXN1 MUTATED NRXN1 WILD-TYPE 
             23             126 
  NRXN1 MUTATED NRXN1 WILD-TYPE 
              7              43 
$`NRXN1 MUTATED`
TCGA-05-4249 TCGA-05-4382 TCGA-05-4396 TCGA-05-4398 TCGA-05-4420 TCGA-05-4432 
       38.07        19.92         9.96        47.05        29.95        25.02 
TCGA-38-4631 TCGA-38-4632 TCGA-44-2659 TCGA-44-2668 TCGA-44-3918 TCGA-49-4488 
       11.64        44.61        17.39         8.09         6.44        28.57 
TCGA-49-4514 TCGA-49-6742 TCGA-49-6743 TCGA-50-6590 TCGA-55-5899 TCGA-64-5774 
       43.20        15.02        12.13        42.31         2.86        83.84 
TCGA-64-5781 TCGA-67-3771 TCGA-73-4659 TCGA-73-4668 TCGA-91-6829 
       39.52         1.97        23.38        15.35        41.33 

$`NRXN1 WILD-TYPE`
TCGA-05-4250 TCGA-05-4384 TCGA-05-4390 TCGA-05-4397 TCGA-05-4402 TCGA-05-4405 
        3.98        14.01        37.02        24.03         8.02        20.05 
TCGA-05-4415 TCGA-05-4417 TCGA-05-4418 TCGA-05-4424 TCGA-05-4426 TCGA-05-4427 
        2.96        14.93         8.98        30.02        26.01        26.01 
TCGA-05-4430 TCGA-05-4433 TCGA-05-4434 TCGA-05-5420 TCGA-05-5423 TCGA-05-5425 
       25.02        24.00        15.02         1.02         4.96         2.96 
TCGA-05-5429 TCGA-05-5715 TCGA-35-3615 TCGA-35-4122 TCGA-35-4123 TCGA-35-5375 
        0.99         2.04         0.46         7.36         5.95         8.68 
TCGA-38-4625 TCGA-38-4626 TCGA-38-4627 TCGA-38-4628 TCGA-38-4629 TCGA-38-4630 
       47.61        85.32        37.71        49.02        28.37        35.28 
TCGA-38-6178 TCGA-44-2655 TCGA-44-2656 TCGA-44-2657 TCGA-44-2661 TCGA-44-2662 
        5.19        18.87        19.10        13.15         3.39        15.78 
TCGA-44-2665 TCGA-44-2666 TCGA-44-3396 TCGA-44-3398 TCGA-44-3919 TCGA-44-4112 
       13.15         3.19        10.22         8.32         6.21         4.60 
TCGA-44-5643 TCGA-44-5645 TCGA-44-6144 TCGA-44-6145 TCGA-44-6146 TCGA-44-6147 
        3.48         6.84         0.30         3.35         9.93         7.76 
TCGA-44-6148 TCGA-44-6774 TCGA-44-6775 TCGA-44-6776 TCGA-44-6777 TCGA-44-6778 
        3.12         5.42         2.70        63.72        32.45        36.49 
TCGA-44-6779 TCGA-49-4486 TCGA-49-4487 TCGA-49-4490 TCGA-49-4494 TCGA-49-4501 
       16.41        76.21        28.11        12.66        35.54        46.72 
TCGA-49-4505 TCGA-49-4506 TCGA-49-4507 TCGA-49-4510 TCGA-49-4512 TCGA-49-6744 
       14.07        32.84         8.81        29.46        29.75        12.99 
TCGA-49-6745 TCGA-50-5044 TCGA-50-5045 TCGA-50-5049 TCGA-50-5051 TCGA-50-5055 
        4.93        20.48        71.47        48.82        14.96        25.81 
TCGA-50-5066 TCGA-50-5068 TCGA-50-5072 TCGA-50-5930 TCGA-50-5931 TCGA-50-5932 
        9.76        49.28         8.05         9.27         8.78        35.87 
TCGA-50-5933 TCGA-50-5935 TCGA-50-5936 TCGA-50-5939 TCGA-50-5941 TCGA-50-5942 
       77.88        21.47         8.45        15.12         9.37         4.44 
TCGA-50-5944 TCGA-50-5946 TCGA-50-6591 TCGA-50-6592 TCGA-50-6593 TCGA-50-6594 
       12.26        11.47         3.88        25.51        11.05        12.16 
TCGA-50-6595 TCGA-50-6597 TCGA-55-1592 TCGA-55-1594 TCGA-55-1595 TCGA-55-1596 
        6.21        33.37        23.05        38.73        48.62        45.17 
TCGA-55-6543 TCGA-55-6642 TCGA-55-6712 TCGA-64-1676 TCGA-64-1677 TCGA-64-1678 
        0.07        32.61         0.79        56.81        20.65        39.09 
TCGA-64-1680 TCGA-64-5775 TCGA-64-5778 TCGA-64-5779 TCGA-64-5815 TCGA-67-3770 
       37.02         0.10        30.44        16.67         7.33         0.99 
TCGA-67-3772 TCGA-67-3773 TCGA-67-3774 TCGA-67-6215 TCGA-67-6216 TCGA-67-6217 
        0.59         2.04         0.59         0.89         0.69        13.87 
TCGA-71-6725 TCGA-73-4658 TCGA-73-4662 TCGA-73-4666 TCGA-73-4670 TCGA-73-4675 
        2.01        52.57        29.95        20.28         0.46         1.32 
TCGA-73-4676 TCGA-73-4677 TCGA-91-6828 TCGA-91-6831 TCGA-91-6835 TCGA-91-6836 
        4.01         1.25         1.22         1.28         1.15         0.36 

  NRXN1 MUTATED NRXN1 WILD-TYPE 
           1.97            0.07 
  NRXN1 MUTATED NRXN1 WILD-TYPE 
          83.84           85.32 
  NRXN1 MUTATED NRXN1 WILD-TYPE 
          23.38           12.46 
[1] "2.0 - 83.8 (23.4)" "0.1 - 85.3 (12.5)"
     TCGA-05-4249      TCGA-05-4250      TCGA-05-4382      TCGA-05-4384 
  "NRXN1 MUTATED" "NRXN1 WILD-TYPE"   "NRXN1 MUTATED" "NRXN1 WILD-TYPE" 
     TCGA-05-4390      TCGA-05-4396      TCGA-05-4397      TCGA-05-4398 
"NRXN1 WILD-TYPE"   "NRXN1 MUTATED" "NRXN1 WILD-TYPE"   "NRXN1 MUTATED" 
     TCGA-05-4402      TCGA-05-4405      TCGA-05-4415      TCGA-05-4417 
"NRXN1 WILD-TYPE" "NRXN1 WILD-TYPE" "NRXN1 WILD-TYPE" "NRXN1 WILD-TYPE" 
     TCGA-05-4418      TCGA-05-4420      TCGA-05-4424      TCGA-05-4426 
"NRXN1 WILD-TYPE"   "NRXN1 MUTATED" "NRXN1 WILD-TYPE" "NRXN1 WILD-TYPE" 
     TCGA-05-4427      TCGA-05-4430      TCGA-05-4432      TCGA-05-4433 
"NRXN1 WILD-TYPE" "NRXN1 WILD-TYPE"   "NRXN1 MUTATED" "NRXN1 WILD-TYPE" 
     TCGA-05-4434      TCGA-05-5420      TCGA-05-5423      TCGA-05-5425 
"NRXN1 WILD-TYPE" "NRXN1 WILD-TYPE" "NRXN1 WILD-TYPE" "NRXN1 WILD-TYPE" 
     TCGA-05-5429      TCGA-05-5715      TCGA-35-3615      TCGA-35-4122 
"NRXN1 WILD-TYPE" "NRXN1 WILD-TYPE" "NRXN1 WILD-TYPE" "NRXN1 WILD-TYPE" 
     TCGA-35-4123      TCGA-35-5375      TCGA-38-4625      TCGA-38-4626 
"NRXN1 WILD-TYPE" "NRXN1 WILD-TYPE" "NRXN1 WILD-TYPE" "NRXN1 WILD-TYPE" 
     TCGA-38-4627      TCGA-38-4628      TCGA-38-4629      TCGA-38-4630 
"NRXN1 WILD-TYPE" "NRXN1 WILD-TYPE" "NRXN1 WILD-TYPE" "NRXN1 WILD-TYPE" 
     TCGA-38-4631      TCGA-38-4632      TCGA-38-6178      TCGA-44-2655 
  "NRXN1 MUTATED"   "NRXN1 MUTATED" "NRXN1 WILD-TYPE" "NRXN1 WILD-TYPE" 
     TCGA-44-2656      TCGA-44-2657      TCGA-44-2659      TCGA-44-2661 
"NRXN1 WILD-TYPE" "NRXN1 WILD-TYPE"   "NRXN1 MUTATED" "NRXN1 WILD-TYPE" 
     TCGA-44-2662      TCGA-44-2665      TCGA-44-2666      TCGA-44-2668 
"NRXN1 WILD-TYPE" "NRXN1 WILD-TYPE" "NRXN1 WILD-TYPE"   "NRXN1 MUTATED" 
     TCGA-44-3396      TCGA-44-3398      TCGA-44-3918      TCGA-44-3919 
"NRXN1 WILD-TYPE" "NRXN1 WILD-TYPE"   "NRXN1 MUTATED" "NRXN1 WILD-TYPE" 
     TCGA-44-4112      TCGA-44-5643      TCGA-44-5645      TCGA-44-6144 
"NRXN1 WILD-TYPE" "NRXN1 WILD-TYPE" "NRXN1 WILD-TYPE" "NRXN1 WILD-TYPE" 
     TCGA-44-6145      TCGA-44-6146      TCGA-44-6147      TCGA-44-6148 
"NRXN1 WILD-TYPE" "NRXN1 WILD-TYPE" "NRXN1 WILD-TYPE" "NRXN1 WILD-TYPE" 
     TCGA-44-6774      TCGA-44-6775      TCGA-44-6776      TCGA-44-6777 
"NRXN1 WILD-TYPE" "NRXN1 WILD-TYPE" "NRXN1 WILD-TYPE" "NRXN1 WILD-TYPE" 
     TCGA-44-6778      TCGA-44-6779      TCGA-49-4486      TCGA-49-4487 
"NRXN1 WILD-TYPE" "NRXN1 WILD-TYPE" "NRXN1 WILD-TYPE" "NRXN1 WILD-TYPE" 
     TCGA-49-4488      TCGA-49-4490      TCGA-49-4494      TCGA-49-4501 
  "NRXN1 MUTATED" "NRXN1 WILD-TYPE" "NRXN1 WILD-TYPE" "NRXN1 WILD-TYPE" 
     TCGA-49-4505      TCGA-49-4506      TCGA-49-4507      TCGA-49-4510 
"NRXN1 WILD-TYPE" "NRXN1 WILD-TYPE" "NRXN1 WILD-TYPE" "NRXN1 WILD-TYPE" 
     TCGA-49-4512      TCGA-49-4514      TCGA-49-6742      TCGA-49-6743 
"NRXN1 WILD-TYPE"   "NRXN1 MUTATED"   "NRXN1 MUTATED"   "NRXN1 MUTATED" 
     TCGA-49-6744      TCGA-49-6745      TCGA-50-5044      TCGA-50-5045 
"NRXN1 WILD-TYPE" "NRXN1 WILD-TYPE" "NRXN1 WILD-TYPE" "NRXN1 WILD-TYPE" 
     TCGA-50-5049      TCGA-50-5051      TCGA-50-5055      TCGA-50-5066 
"NRXN1 WILD-TYPE" "NRXN1 WILD-TYPE" "NRXN1 WILD-TYPE" "NRXN1 WILD-TYPE" 
     TCGA-50-5068      TCGA-50-5072      TCGA-50-5930      TCGA-50-5931 
"NRXN1 WILD-TYPE" "NRXN1 WILD-TYPE" "NRXN1 WILD-TYPE" "NRXN1 WILD-TYPE" 
     TCGA-50-5932      TCGA-50-5933      TCGA-50-5935      TCGA-50-5936 
"NRXN1 WILD-TYPE" "NRXN1 WILD-TYPE" "NRXN1 WILD-TYPE" "NRXN1 WILD-TYPE" 
     TCGA-50-5939      TCGA-50-5941      TCGA-50-5942      TCGA-50-5944 
"NRXN1 WILD-TYPE" "NRXN1 WILD-TYPE" "NRXN1 WILD-TYPE" "NRXN1 WILD-TYPE" 
     TCGA-50-5946      TCGA-50-6590      TCGA-50-6591      TCGA-50-6592 
"NRXN1 WILD-TYPE"   "NRXN1 MUTATED" "NRXN1 WILD-TYPE" "NRXN1 WILD-TYPE" 
     TCGA-50-6593      TCGA-50-6594      TCGA-50-6595      TCGA-50-6597 
"NRXN1 WILD-TYPE" "NRXN1 WILD-TYPE" "NRXN1 WILD-TYPE" "NRXN1 WILD-TYPE" 
     TCGA-55-1592      TCGA-55-1594      TCGA-55-1595      TCGA-55-1596 
"NRXN1 WILD-TYPE" "NRXN1 WILD-TYPE" "NRXN1 WILD-TYPE" "NRXN1 WILD-TYPE" 
     TCGA-55-5899      TCGA-55-6543      TCGA-55-6642      TCGA-55-6712 
  "NRXN1 MUTATED" "NRXN1 WILD-TYPE" "NRXN1 WILD-TYPE" "NRXN1 WILD-TYPE" 
     TCGA-64-1676      TCGA-64-1677      TCGA-64-1678      TCGA-64-1680 
"NRXN1 WILD-TYPE" "NRXN1 WILD-TYPE" "NRXN1 WILD-TYPE" "NRXN1 WILD-TYPE" 
     TCGA-64-5774      TCGA-64-5775      TCGA-64-5778      TCGA-64-5779 
  "NRXN1 MUTATED" "NRXN1 WILD-TYPE" "NRXN1 WILD-TYPE" "NRXN1 WILD-TYPE" 
     TCGA-64-5781      TCGA-64-5815      TCGA-67-3770      TCGA-67-3771 
  "NRXN1 MUTATED" "NRXN1 WILD-TYPE" "NRXN1 WILD-TYPE"   "NRXN1 MUTATED" 
     TCGA-67-3772      TCGA-67-3773      TCGA-67-3774      TCGA-67-6215 
"NRXN1 WILD-TYPE" "NRXN1 WILD-TYPE" "NRXN1 WILD-TYPE" "NRXN1 WILD-TYPE" 
     TCGA-67-6216      TCGA-67-6217      TCGA-71-6725      TCGA-73-4658 
"NRXN1 WILD-TYPE" "NRXN1 WILD-TYPE" "NRXN1 WILD-TYPE" "NRXN1 WILD-TYPE" 
     TCGA-73-4659      TCGA-73-4662      TCGA-73-4666      TCGA-73-4668 
  "NRXN1 MUTATED" "NRXN1 WILD-TYPE" "NRXN1 WILD-TYPE"   "NRXN1 MUTATED" 
     TCGA-73-4670      TCGA-73-4675      TCGA-73-4676      TCGA-73-4677 
"NRXN1 WILD-TYPE" "NRXN1 WILD-TYPE" "NRXN1 WILD-TYPE" "NRXN1 WILD-TYPE" 
     TCGA-91-6828      TCGA-91-6829      TCGA-91-6831      TCGA-91-6835 
"NRXN1 WILD-TYPE"   "NRXN1 MUTATED" "NRXN1 WILD-TYPE" "NRXN1 WILD-TYPE" 
     TCGA-91-6836 
"NRXN1 WILD-TYPE" 
     TCGA-05-4249      TCGA-05-4250      TCGA-05-4382      TCGA-05-4384 
  "NRXN1 MUTATED" "NRXN1 WILD-TYPE"   "NRXN1 MUTATED" "NRXN1 WILD-TYPE" 
     TCGA-05-4390      TCGA-05-4396      TCGA-05-4397      TCGA-05-4398 
"NRXN1 WILD-TYPE"   "NRXN1 MUTATED" "NRXN1 WILD-TYPE"   "NRXN1 MUTATED" 
     TCGA-05-4402      TCGA-05-4405      TCGA-05-4415      TCGA-05-4417 
"NRXN1 WILD-TYPE" "NRXN1 WILD-TYPE" "NRXN1 WILD-TYPE" "NRXN1 WILD-TYPE" 
     TCGA-05-4418      TCGA-05-4420      TCGA-05-4424      TCGA-05-4426 
"NRXN1 WILD-TYPE"   "NRXN1 MUTATED" "NRXN1 WILD-TYPE" "NRXN1 WILD-TYPE" 
     TCGA-05-4427      TCGA-05-4430      TCGA-05-4432      TCGA-05-4433 
"NRXN1 WILD-TYPE" "NRXN1 WILD-TYPE"   "NRXN1 MUTATED" "NRXN1 WILD-TYPE" 
     TCGA-05-4434      TCGA-05-5420      TCGA-05-5423      TCGA-05-5425 
"NRXN1 WILD-TYPE" "NRXN1 WILD-TYPE" "NRXN1 WILD-TYPE" "NRXN1 WILD-TYPE" 
     TCGA-05-5429      TCGA-05-5715      TCGA-35-3615      TCGA-35-4122 
"NRXN1 WILD-TYPE" "NRXN1 WILD-TYPE" "NRXN1 WILD-TYPE" "NRXN1 WILD-TYPE" 
     TCGA-35-4123      TCGA-35-5375      TCGA-38-4625      TCGA-38-4626 
"NRXN1 WILD-TYPE" "NRXN1 WILD-TYPE" "NRXN1 WILD-TYPE" "NRXN1 WILD-TYPE" 
     TCGA-38-4627      TCGA-38-4628      TCGA-38-4629      TCGA-38-4630 
"NRXN1 WILD-TYPE" "NRXN1 WILD-TYPE" "NRXN1 WILD-TYPE" "NRXN1 WILD-TYPE" 
     TCGA-38-4631      TCGA-38-4632      TCGA-38-6178      TCGA-44-2655 
  "NRXN1 MUTATED"   "NRXN1 MUTATED" "NRXN1 WILD-TYPE" "NRXN1 WILD-TYPE" 
     TCGA-44-2656      TCGA-44-2657      TCGA-44-2659      TCGA-44-2661 
"NRXN1 WILD-TYPE" "NRXN1 WILD-TYPE"   "NRXN1 MUTATED" "NRXN1 WILD-TYPE" 
     TCGA-44-2662      TCGA-44-2665      TCGA-44-2666      TCGA-44-2668 
"NRXN1 WILD-TYPE" "NRXN1 WILD-TYPE" "NRXN1 WILD-TYPE"   "NRXN1 MUTATED" 
     TCGA-44-3396      TCGA-44-3398      TCGA-44-3918      TCGA-44-3919 
"NRXN1 WILD-TYPE" "NRXN1 WILD-TYPE"   "NRXN1 MUTATED" "NRXN1 WILD-TYPE" 
     TCGA-44-4112      TCGA-44-5643      TCGA-44-5645      TCGA-44-6144 
"NRXN1 WILD-TYPE" "NRXN1 WILD-TYPE" "NRXN1 WILD-TYPE" "NRXN1 WILD-TYPE" 
     TCGA-44-6145      TCGA-44-6146      TCGA-44-6147      TCGA-44-6148 
"NRXN1 WILD-TYPE" "NRXN1 WILD-TYPE" "NRXN1 WILD-TYPE" "NRXN1 WILD-TYPE" 
     TCGA-44-6774      TCGA-44-6775      TCGA-44-6776      TCGA-44-6777 
"NRXN1 WILD-TYPE" "NRXN1 WILD-TYPE" "NRXN1 WILD-TYPE" "NRXN1 WILD-TYPE" 
     TCGA-44-6778      TCGA-44-6779      TCGA-49-4486      TCGA-49-4487 
"NRXN1 WILD-TYPE" "NRXN1 WILD-TYPE" "NRXN1 WILD-TYPE" "NRXN1 WILD-TYPE" 
     TCGA-49-4488      TCGA-49-4490      TCGA-49-4494      TCGA-49-4501 
  "NRXN1 MUTATED" "NRXN1 WILD-TYPE" "NRXN1 WILD-TYPE" "NRXN1 WILD-TYPE" 
     TCGA-49-4505      TCGA-49-4506      TCGA-49-4507      TCGA-49-4510 
"NRXN1 WILD-TYPE" "NRXN1 WILD-TYPE" "NRXN1 WILD-TYPE" "NRXN1 WILD-TYPE" 
     TCGA-49-4512      TCGA-49-4514      TCGA-49-6742      TCGA-49-6743 
"NRXN1 WILD-TYPE"   "NRXN1 MUTATED"   "NRXN1 MUTATED"   "NRXN1 MUTATED" 
     TCGA-49-6744      TCGA-49-6745      TCGA-50-5044      TCGA-50-5045 
"NRXN1 WILD-TYPE" "NRXN1 WILD-TYPE" "NRXN1 WILD-TYPE" "NRXN1 WILD-TYPE" 
     TCGA-50-5049      TCGA-50-5051      TCGA-50-5055      TCGA-50-5066 
"NRXN1 WILD-TYPE" "NRXN1 WILD-TYPE" "NRXN1 WILD-TYPE" "NRXN1 WILD-TYPE" 
     TCGA-50-5068      TCGA-50-5072      TCGA-50-5930      TCGA-50-5931 
"NRXN1 WILD-TYPE" "NRXN1 WILD-TYPE" "NRXN1 WILD-TYPE" "NRXN1 WILD-TYPE" 
     TCGA-50-5932      TCGA-50-5933      TCGA-50-5935      TCGA-50-5936 
"NRXN1 WILD-TYPE" "NRXN1 WILD-TYPE" "NRXN1 WILD-TYPE" "NRXN1 WILD-TYPE" 
     TCGA-50-5939      TCGA-50-5941      TCGA-50-5942      TCGA-50-5944 
"NRXN1 WILD-TYPE" "NRXN1 WILD-TYPE" "NRXN1 WILD-TYPE" "NRXN1 WILD-TYPE" 
     TCGA-50-5946      TCGA-50-6590      TCGA-50-6591      TCGA-50-6592 
"NRXN1 WILD-TYPE"   "NRXN1 MUTATED" "NRXN1 WILD-TYPE" "NRXN1 WILD-TYPE" 
     TCGA-50-6593      TCGA-50-6594      TCGA-50-6595      TCGA-50-6597 
"NRXN1 WILD-TYPE" "NRXN1 WILD-TYPE" "NRXN1 WILD-TYPE" "NRXN1 WILD-TYPE" 
     TCGA-55-1592      TCGA-55-1594      TCGA-55-1595      TCGA-55-1596 
"NRXN1 WILD-TYPE" "NRXN1 WILD-TYPE" "NRXN1 WILD-TYPE" "NRXN1 WILD-TYPE" 
     TCGA-55-5899      TCGA-55-6543      TCGA-55-6642      TCGA-55-6712 
  "NRXN1 MUTATED" "NRXN1 WILD-TYPE" "NRXN1 WILD-TYPE" "NRXN1 WILD-TYPE" 
     TCGA-64-1676      TCGA-64-1677      TCGA-64-1678      TCGA-64-1680 
"NRXN1 WILD-TYPE" "NRXN1 WILD-TYPE" "NRXN1 WILD-TYPE" "NRXN1 WILD-TYPE" 
     TCGA-64-5774      TCGA-64-5775      TCGA-64-5778      TCGA-64-5779 
  "NRXN1 MUTATED" "NRXN1 WILD-TYPE" "NRXN1 WILD-TYPE" "NRXN1 WILD-TYPE" 
     TCGA-64-5781      TCGA-64-5815      TCGA-67-3770      TCGA-67-3771 
  "NRXN1 MUTATED" "NRXN1 WILD-TYPE" "NRXN1 WILD-TYPE"   "NRXN1 MUTATED" 
     TCGA-67-3772      TCGA-67-3773      TCGA-67-3774      TCGA-67-6215 
"NRXN1 WILD-TYPE" "NRXN1 WILD-TYPE" "NRXN1 WILD-TYPE" "NRXN1 WILD-TYPE" 
     TCGA-67-6216      TCGA-67-6217      TCGA-71-6725      TCGA-73-4658 
"NRXN1 WILD-TYPE" "NRXN1 WILD-TYPE" "NRXN1 WILD-TYPE" "NRXN1 WILD-TYPE" 
     TCGA-73-4659      TCGA-73-4662      TCGA-73-4666      TCGA-73-4668 
  "NRXN1 MUTATED" "NRXN1 WILD-TYPE" "NRXN1 WILD-TYPE"   "NRXN1 MUTATED" 
     TCGA-73-4670      TCGA-73-4675      TCGA-73-4676      TCGA-73-4677 
"NRXN1 WILD-TYPE" "NRXN1 WILD-TYPE" "NRXN1 WILD-TYPE" "NRXN1 WILD-TYPE" 
     TCGA-91-6828      TCGA-91-6829      TCGA-91-6831      TCGA-91-6835 
"NRXN1 WILD-TYPE"   "NRXN1 MUTATED" "NRXN1 WILD-TYPE" "NRXN1 WILD-TYPE" 
     TCGA-91-6836 
"NRXN1 WILD-TYPE" 
     TCGA-05-4249      TCGA-05-4250      TCGA-05-4382      TCGA-05-4384 
  "NRXN1 MUTATED" "NRXN1 WILD-TYPE"   "NRXN1 MUTATED" "NRXN1 WILD-TYPE" 
     TCGA-05-4390      TCGA-05-4396      TCGA-05-4397      TCGA-05-4398 
"NRXN1 WILD-TYPE"   "NRXN1 MUTATED" "NRXN1 WILD-TYPE"   "NRXN1 MUTATED" 
     TCGA-05-4402      TCGA-05-4405      TCGA-05-4415      TCGA-05-4417 
"NRXN1 WILD-TYPE" "NRXN1 WILD-TYPE" "NRXN1 WILD-TYPE" "NRXN1 WILD-TYPE" 
     TCGA-05-4418      TCGA-05-4420      TCGA-05-4424      TCGA-05-4426 
"NRXN1 WILD-TYPE"   "NRXN1 MUTATED" "NRXN1 WILD-TYPE" "NRXN1 WILD-TYPE" 
     TCGA-05-4427      TCGA-05-4430      TCGA-05-4432      TCGA-05-4433 
"NRXN1 WILD-TYPE" "NRXN1 WILD-TYPE"   "NRXN1 MUTATED" "NRXN1 WILD-TYPE" 
     TCGA-05-4434      TCGA-05-5420      TCGA-05-5423      TCGA-05-5425 
"NRXN1 WILD-TYPE" "NRXN1 WILD-TYPE" "NRXN1 WILD-TYPE" "NRXN1 WILD-TYPE" 
     TCGA-05-5429      TCGA-05-5715      TCGA-35-3615      TCGA-35-4122 
"NRXN1 WILD-TYPE" "NRXN1 WILD-TYPE" "NRXN1 WILD-TYPE" "NRXN1 WILD-TYPE" 
     TCGA-35-4123      TCGA-35-5375      TCGA-38-4625      TCGA-38-4626 
"NRXN1 WILD-TYPE" "NRXN1 WILD-TYPE" "NRXN1 WILD-TYPE" "NRXN1 WILD-TYPE" 
     TCGA-38-4627      TCGA-38-4628      TCGA-38-4629      TCGA-38-4630 
"NRXN1 WILD-TYPE" "NRXN1 WILD-TYPE" "NRXN1 WILD-TYPE" "NRXN1 WILD-TYPE" 
     TCGA-38-4631      TCGA-38-4632      TCGA-38-6178      TCGA-44-2655 
  "NRXN1 MUTATED"   "NRXN1 MUTATED" "NRXN1 WILD-TYPE" "NRXN1 WILD-TYPE" 
     TCGA-44-2656      TCGA-44-2657      TCGA-44-2659      TCGA-44-2661 
"NRXN1 WILD-TYPE" "NRXN1 WILD-TYPE"   "NRXN1 MUTATED" "NRXN1 WILD-TYPE" 
     TCGA-44-2662      TCGA-44-2665      TCGA-44-2666      TCGA-44-2668 
"NRXN1 WILD-TYPE" "NRXN1 WILD-TYPE" "NRXN1 WILD-TYPE"   "NRXN1 MUTATED" 
     TCGA-44-3396      TCGA-44-3398      TCGA-44-3918      TCGA-44-3919 
"NRXN1 WILD-TYPE" "NRXN1 WILD-TYPE"   "NRXN1 MUTATED" "NRXN1 WILD-TYPE" 
     TCGA-44-4112      TCGA-44-5643      TCGA-44-5645      TCGA-44-6144 
"NRXN1 WILD-TYPE" "NRXN1 WILD-TYPE" "NRXN1 WILD-TYPE" "NRXN1 WILD-TYPE" 
     TCGA-44-6145      TCGA-44-6146      TCGA-44-6147      TCGA-44-6148 
"NRXN1 WILD-TYPE" "NRXN1 WILD-TYPE" "NRXN1 WILD-TYPE" "NRXN1 WILD-TYPE" 
     TCGA-44-6774      TCGA-44-6775      TCGA-44-6776      TCGA-44-6777 
"NRXN1 WILD-TYPE" "NRXN1 WILD-TYPE" "NRXN1 WILD-TYPE" "NRXN1 WILD-TYPE" 
     TCGA-44-6778      TCGA-44-6779      TCGA-49-4486      TCGA-49-4487 
"NRXN1 WILD-TYPE" "NRXN1 WILD-TYPE" "NRXN1 WILD-TYPE" "NRXN1 WILD-TYPE" 
     TCGA-49-4488      TCGA-49-4490      TCGA-49-4494      TCGA-49-4501 
  "NRXN1 MUTATED" "NRXN1 WILD-TYPE" "NRXN1 WILD-TYPE" "NRXN1 WILD-TYPE" 
     TCGA-49-4505      TCGA-49-4506      TCGA-49-4507      TCGA-49-4510 
"NRXN1 WILD-TYPE" "NRXN1 WILD-TYPE" "NRXN1 WILD-TYPE" "NRXN1 WILD-TYPE" 
     TCGA-49-4512      TCGA-49-4514      TCGA-49-6742      TCGA-49-6743 
"NRXN1 WILD-TYPE"   "NRXN1 MUTATED"   "NRXN1 MUTATED"   "NRXN1 MUTATED" 
     TCGA-49-6744      TCGA-49-6745      TCGA-50-5044      TCGA-50-5045 
"NRXN1 WILD-TYPE" "NRXN1 WILD-TYPE" "NRXN1 WILD-TYPE" "NRXN1 WILD-TYPE" 
     TCGA-50-5049      TCGA-50-5051      TCGA-50-5055      TCGA-50-5066 
"NRXN1 WILD-TYPE" "NRXN1 WILD-TYPE" "NRXN1 WILD-TYPE" "NRXN1 WILD-TYPE" 
     TCGA-50-5068      TCGA-50-5072      TCGA-50-5930      TCGA-50-5931 
"NRXN1 WILD-TYPE" "NRXN1 WILD-TYPE" "NRXN1 WILD-TYPE" "NRXN1 WILD-TYPE" 
     TCGA-50-5932      TCGA-50-5933      TCGA-50-5935      TCGA-50-5936 
"NRXN1 WILD-TYPE" "NRXN1 WILD-TYPE" "NRXN1 WILD-TYPE" "NRXN1 WILD-TYPE" 
     TCGA-50-5939      TCGA-50-5941      TCGA-50-5942      TCGA-50-5944 
"NRXN1 WILD-TYPE" "NRXN1 WILD-TYPE" "NRXN1 WILD-TYPE" "NRXN1 WILD-TYPE" 
     TCGA-50-5946      TCGA-50-6590      TCGA-50-6591      TCGA-50-6592 
"NRXN1 WILD-TYPE"   "NRXN1 MUTATED" "NRXN1 WILD-TYPE" "NRXN1 WILD-TYPE" 
     TCGA-50-6593      TCGA-50-6594      TCGA-50-6595      TCGA-50-6597 
"NRXN1 WILD-TYPE" "NRXN1 WILD-TYPE" "NRXN1 WILD-TYPE" "NRXN1 WILD-TYPE" 
     TCGA-55-1592      TCGA-55-1594      TCGA-55-1595      TCGA-55-1596 
"NRXN1 WILD-TYPE" "NRXN1 WILD-TYPE" "NRXN1 WILD-TYPE" "NRXN1 WILD-TYPE" 
     TCGA-55-5899      TCGA-55-6543      TCGA-55-6642      TCGA-55-6712 
  "NRXN1 MUTATED" "NRXN1 WILD-TYPE" "NRXN1 WILD-TYPE" "NRXN1 WILD-TYPE" 
     TCGA-64-1676      TCGA-64-1677      TCGA-64-1678      TCGA-64-1680 
"NRXN1 WILD-TYPE" "NRXN1 WILD-TYPE" "NRXN1 WILD-TYPE" "NRXN1 WILD-TYPE" 
     TCGA-64-5774      TCGA-64-5775      TCGA-64-5778      TCGA-64-5779 
  "NRXN1 MUTATED" "NRXN1 WILD-TYPE" "NRXN1 WILD-TYPE" "NRXN1 WILD-TYPE" 
     TCGA-64-5781      TCGA-64-5815      TCGA-67-3770      TCGA-67-3771 
  "NRXN1 MUTATED" "NRXN1 WILD-TYPE" "NRXN1 WILD-TYPE"   "NRXN1 MUTATED" 
     TCGA-67-3772      TCGA-67-3773      TCGA-67-3774      TCGA-67-6215 
"NRXN1 WILD-TYPE" "NRXN1 WILD-TYPE" "NRXN1 WILD-TYPE" "NRXN1 WILD-TYPE" 
     TCGA-67-6216      TCGA-67-6217      TCGA-71-6725      TCGA-73-4658 
"NRXN1 WILD-TYPE" "NRXN1 WILD-TYPE" "NRXN1 WILD-TYPE" "NRXN1 WILD-TYPE" 
     TCGA-73-4659      TCGA-73-4662      TCGA-73-4666      TCGA-73-4668 
  "NRXN1 MUTATED" "NRXN1 WILD-TYPE" "NRXN1 WILD-TYPE"   "NRXN1 MUTATED" 
     TCGA-73-4670      TCGA-73-4675      TCGA-73-4676      TCGA-73-4677 
"NRXN1 WILD-TYPE" "NRXN1 WILD-TYPE" "NRXN1 WILD-TYPE" "NRXN1 WILD-TYPE" 
     TCGA-91-6828      TCGA-91-6829      TCGA-91-6831      TCGA-91-6835 
"NRXN1 WILD-TYPE"   "NRXN1 MUTATED" "NRXN1 WILD-TYPE" "NRXN1 WILD-TYPE" 
     TCGA-91-6836 
"NRXN1 WILD-TYPE" 
[1] "hr=" "1.7"
D116V2, continuous
D116V3, binary
[1] "tbl2"
                 cls
clus              [,1] [,2]
  NRXN1 MUTATED     11   14
  NRXN1 WILD-TYPE   82   65
        clus
vv       NRXN1 MUTATED NRXN1 WILD-TYPE
  FEMALE            11              82
  MALE              14              65
D116V4, continuous
D116V5, multiclass
D116V6, multiclass
    clus
vv   NRXN1 MUTATED NRXN1 WILD-TYPE
  T1             7              34
  T2            16              92
  T3             0              14
  T4             2               6
D116V7, multiclass
       clus
vv      NRXN1 MUTATED NRXN1 WILD-TYPE
  N0               15              80
  N1                7              30
  N2+N3             3              32
D116V8, multiclass
    clus
vv   NRXN1 MUTATED NRXN1 WILD-TYPE
  M0            20             117
  M1             1               8
  MX             4              18
D116V9, multiclass
     clus
vv    NRXN1 MUTATED NRXN1 WILD-TYPE
  I              16              72
  II              4              29
  III             4              35
  IV              1               8
D116V10, binary
[1] "tbl2"
                 cls
clus              [,1] [,2]
  NRXN1 MUTATED      0   25
  NRXN1 WILD-TYPE   16  131
     clus
vv    NRXN1 MUTATED NRXN1 WILD-TYPE
  NO              0              16
  YES            25             131
D116V11, continuous
D116V12, continuous
D116V13, multiclass
                                             clus
vv                                            NRXN1 MUTATED NRXN1 WILD-TYPE
  CURRENT REFORMED SMOKER FOR < OR = 15 YEARS            13              49
  CURRENT REFORMED SMOKER FOR > 15 YEARS                  8              38
  CURRENT SMOKER                                          4              24
  LIFELONG NON-SMOKER                                     0              24
D116V14, continuous

Clustering(117) Variable = SLC10A2 MUTATION ANALYSIS
D117V1, survival
                   sevent
clus2                0  1
  SLC10A2 MUTATED    6  1
  SLC10A2 WILD-TYPE 93 49
  SLC10A2 MUTATED SLC10A2 WILD-TYPE 
                7               142 
  SLC10A2 MUTATED SLC10A2 WILD-TYPE 
                1                49 
$`SLC10A2 MUTATED`
TCGA-05-4424 TCGA-05-4427 TCGA-44-2656 TCGA-49-6743 TCGA-55-1592 TCGA-64-5778 
       30.02        26.01        19.10        12.13        23.05        30.44 
TCGA-64-5781 
       39.52 

$`SLC10A2 WILD-TYPE`
TCGA-05-4249 TCGA-05-4250 TCGA-05-4382 TCGA-05-4384 TCGA-05-4390 TCGA-05-4396 
       38.07         3.98        19.92        14.01        37.02         9.96 
TCGA-05-4397 TCGA-05-4398 TCGA-05-4402 TCGA-05-4405 TCGA-05-4415 TCGA-05-4417 
       24.03        47.05         8.02        20.05         2.96        14.93 
TCGA-05-4418 TCGA-05-4420 TCGA-05-4426 TCGA-05-4430 TCGA-05-4432 TCGA-05-4433 
        8.98        29.95        26.01        25.02        25.02        24.00 
TCGA-05-4434 TCGA-05-5420 TCGA-05-5423 TCGA-05-5425 TCGA-05-5429 TCGA-05-5715 
       15.02         1.02         4.96         2.96         0.99         2.04 
TCGA-35-3615 TCGA-35-4122 TCGA-35-4123 TCGA-35-5375 TCGA-38-4625 TCGA-38-4626 
        0.46         7.36         5.95         8.68        47.61        85.32 
TCGA-38-4627 TCGA-38-4628 TCGA-38-4629 TCGA-38-4630 TCGA-38-4631 TCGA-38-4632 
       37.71        49.02        28.37        35.28        11.64        44.61 
TCGA-38-6178 TCGA-44-2655 TCGA-44-2657 TCGA-44-2659 TCGA-44-2661 TCGA-44-2662 
        5.19        18.87        13.15        17.39         3.39        15.78 
TCGA-44-2665 TCGA-44-2666 TCGA-44-2668 TCGA-44-3396 TCGA-44-3398 TCGA-44-3918 
       13.15         3.19         8.09        10.22         8.32         6.44 
TCGA-44-3919 TCGA-44-4112 TCGA-44-5643 TCGA-44-5645 TCGA-44-6144 TCGA-44-6145 
        6.21         4.60         3.48         6.84         0.30         3.35 
TCGA-44-6146 TCGA-44-6147 TCGA-44-6148 TCGA-44-6774 TCGA-44-6775 TCGA-44-6776 
        9.93         7.76         3.12         5.42         2.70        63.72 
TCGA-44-6777 TCGA-44-6778 TCGA-44-6779 TCGA-49-4486 TCGA-49-4487 TCGA-49-4488 
       32.45        36.49        16.41        76.21        28.11        28.57 
TCGA-49-4490 TCGA-49-4494 TCGA-49-4501 TCGA-49-4505 TCGA-49-4506 TCGA-49-4507 
       12.66        35.54        46.72        14.07        32.84         8.81 
TCGA-49-4510 TCGA-49-4512 TCGA-49-4514 TCGA-49-6742 TCGA-49-6744 TCGA-49-6745 
       29.46        29.75        43.20        15.02        12.99         4.93 
TCGA-50-5044 TCGA-50-5045 TCGA-50-5049 TCGA-50-5051 TCGA-50-5055 TCGA-50-5066 
       20.48        71.47        48.82        14.96        25.81         9.76 
TCGA-50-5068 TCGA-50-5072 TCGA-50-5930 TCGA-50-5931 TCGA-50-5932 TCGA-50-5933 
       49.28         8.05         9.27         8.78        35.87        77.88 
TCGA-50-5935 TCGA-50-5936 TCGA-50-5939 TCGA-50-5941 TCGA-50-5942 TCGA-50-5944 
       21.47         8.45        15.12         9.37         4.44        12.26 
TCGA-50-5946 TCGA-50-6590 TCGA-50-6591 TCGA-50-6592 TCGA-50-6593 TCGA-50-6594 
       11.47        42.31         3.88        25.51        11.05        12.16 
TCGA-50-6595 TCGA-50-6597 TCGA-55-1594 TCGA-55-1595 TCGA-55-1596 TCGA-55-5899 
        6.21        33.37        38.73        48.62        45.17         2.86 
TCGA-55-6543 TCGA-55-6642 TCGA-55-6712 TCGA-64-1676 TCGA-64-1677 TCGA-64-1678 
        0.07        32.61         0.79        56.81        20.65        39.09 
TCGA-64-1680 TCGA-64-5774 TCGA-64-5775 TCGA-64-5779 TCGA-64-5815 TCGA-67-3770 
       37.02        83.84         0.10        16.67         7.33         0.99 
TCGA-67-3771 TCGA-67-3772 TCGA-67-3773 TCGA-67-3774 TCGA-67-6215 TCGA-67-6216 
        1.97         0.59         2.04         0.59         0.89         0.69 
TCGA-67-6217 TCGA-71-6725 TCGA-73-4658 TCGA-73-4659 TCGA-73-4662 TCGA-73-4666 
       13.87         2.01        52.57        23.38        29.95        20.28 
TCGA-73-4668 TCGA-73-4670 TCGA-73-4675 TCGA-73-4676 TCGA-73-4677 TCGA-91-6828 
       15.35         0.46         1.32         4.01         1.25         1.22 
TCGA-91-6829 TCGA-91-6831 TCGA-91-6835 TCGA-91-6836 
       41.33         1.28         1.15         0.36 

  SLC10A2 MUTATED SLC10A2 WILD-TYPE 
            12.13              0.07 
  SLC10A2 MUTATED SLC10A2 WILD-TYPE 
            39.52             85.32 
  SLC10A2 MUTATED SLC10A2 WILD-TYPE 
            26.01             13.07 
[1] "12.1 - 39.5 (26.0)" "0.1 - 85.3 (13.1)" 
       TCGA-05-4249        TCGA-05-4250        TCGA-05-4382        TCGA-05-4384 
"SLC10A2 WILD-TYPE" "SLC10A2 WILD-TYPE" "SLC10A2 WILD-TYPE" "SLC10A2 WILD-TYPE" 
       TCGA-05-4390        TCGA-05-4396        TCGA-05-4397        TCGA-05-4398 
"SLC10A2 WILD-TYPE" "SLC10A2 WILD-TYPE" "SLC10A2 WILD-TYPE" "SLC10A2 WILD-TYPE" 
       TCGA-05-4402        TCGA-05-4405        TCGA-05-4415        TCGA-05-4417 
"SLC10A2 WILD-TYPE" "SLC10A2 WILD-TYPE" "SLC10A2 WILD-TYPE" "SLC10A2 WILD-TYPE" 
       TCGA-05-4418        TCGA-05-4420        TCGA-05-4424        TCGA-05-4426 
"SLC10A2 WILD-TYPE" "SLC10A2 WILD-TYPE"   "SLC10A2 MUTATED" "SLC10A2 WILD-TYPE" 
       TCGA-05-4427        TCGA-05-4430        TCGA-05-4432        TCGA-05-4433 
  "SLC10A2 MUTATED" "SLC10A2 WILD-TYPE" "SLC10A2 WILD-TYPE" "SLC10A2 WILD-TYPE" 
       TCGA-05-4434        TCGA-05-5420        TCGA-05-5423        TCGA-05-5425 
"SLC10A2 WILD-TYPE" "SLC10A2 WILD-TYPE" "SLC10A2 WILD-TYPE" "SLC10A2 WILD-TYPE" 
       TCGA-05-5429        TCGA-05-5715        TCGA-35-3615        TCGA-35-4122 
"SLC10A2 WILD-TYPE" "SLC10A2 WILD-TYPE" "SLC10A2 WILD-TYPE" "SLC10A2 WILD-TYPE" 
       TCGA-35-4123        TCGA-35-5375        TCGA-38-4625        TCGA-38-4626 
"SLC10A2 WILD-TYPE" "SLC10A2 WILD-TYPE" "SLC10A2 WILD-TYPE" "SLC10A2 WILD-TYPE" 
       TCGA-38-4627        TCGA-38-4628        TCGA-38-4629        TCGA-38-4630 
"SLC10A2 WILD-TYPE" "SLC10A2 WILD-TYPE" "SLC10A2 WILD-TYPE" "SLC10A2 WILD-TYPE" 
       TCGA-38-4631        TCGA-38-4632        TCGA-38-6178        TCGA-44-2655 
"SLC10A2 WILD-TYPE" "SLC10A2 WILD-TYPE" "SLC10A2 WILD-TYPE" "SLC10A2 WILD-TYPE" 
       TCGA-44-2656        TCGA-44-2657        TCGA-44-2659        TCGA-44-2661 
  "SLC10A2 MUTATED" "SLC10A2 WILD-TYPE" "SLC10A2 WILD-TYPE" "SLC10A2 WILD-TYPE" 
       TCGA-44-2662        TCGA-44-2665        TCGA-44-2666        TCGA-44-2668 
"SLC10A2 WILD-TYPE" "SLC10A2 WILD-TYPE" "SLC10A2 WILD-TYPE" "SLC10A2 WILD-TYPE" 
       TCGA-44-3396        TCGA-44-3398        TCGA-44-3918        TCGA-44-3919 
"SLC10A2 WILD-TYPE" "SLC10A2 WILD-TYPE" "SLC10A2 WILD-TYPE" "SLC10A2 WILD-TYPE" 
       TCGA-44-4112        TCGA-44-5643        TCGA-44-5645        TCGA-44-6144 
"SLC10A2 WILD-TYPE" "SLC10A2 WILD-TYPE" "SLC10A2 WILD-TYPE" "SLC10A2 WILD-TYPE" 
       TCGA-44-6145        TCGA-44-6146        TCGA-44-6147        TCGA-44-6148 
"SLC10A2 WILD-TYPE" "SLC10A2 WILD-TYPE" "SLC10A2 WILD-TYPE" "SLC10A2 WILD-TYPE" 
       TCGA-44-6774        TCGA-44-6775        TCGA-44-6776        TCGA-44-6777 
"SLC10A2 WILD-TYPE" "SLC10A2 WILD-TYPE" "SLC10A2 WILD-TYPE" "SLC10A2 WILD-TYPE" 
       TCGA-44-6778        TCGA-44-6779        TCGA-49-4486        TCGA-49-4487 
"SLC10A2 WILD-TYPE" "SLC10A2 WILD-TYPE" "SLC10A2 WILD-TYPE" "SLC10A2 WILD-TYPE" 
       TCGA-49-4488        TCGA-49-4490        TCGA-49-4494        TCGA-49-4501 
"SLC10A2 WILD-TYPE" "SLC10A2 WILD-TYPE" "SLC10A2 WILD-TYPE" "SLC10A2 WILD-TYPE" 
       TCGA-49-4505        TCGA-49-4506        TCGA-49-4507        TCGA-49-4510 
"SLC10A2 WILD-TYPE" "SLC10A2 WILD-TYPE" "SLC10A2 WILD-TYPE" "SLC10A2 WILD-TYPE" 
       TCGA-49-4512        TCGA-49-4514        TCGA-49-6742        TCGA-49-6743 
"SLC10A2 WILD-TYPE" "SLC10A2 WILD-TYPE" "SLC10A2 WILD-TYPE"   "SLC10A2 MUTATED" 
       TCGA-49-6744        TCGA-49-6745        TCGA-50-5044        TCGA-50-5045 
"SLC10A2 WILD-TYPE" "SLC10A2 WILD-TYPE" "SLC10A2 WILD-TYPE" "SLC10A2 WILD-TYPE" 
       TCGA-50-5049        TCGA-50-5051        TCGA-50-5055        TCGA-50-5066 
"SLC10A2 WILD-TYPE" "SLC10A2 WILD-TYPE" "SLC10A2 WILD-TYPE" "SLC10A2 WILD-TYPE" 
       TCGA-50-5068        TCGA-50-5072        TCGA-50-5930        TCGA-50-5931 
"SLC10A2 WILD-TYPE" "SLC10A2 WILD-TYPE" "SLC10A2 WILD-TYPE" "SLC10A2 WILD-TYPE" 
       TCGA-50-5932        TCGA-50-5933        TCGA-50-5935        TCGA-50-5936 
"SLC10A2 WILD-TYPE" "SLC10A2 WILD-TYPE" "SLC10A2 WILD-TYPE" "SLC10A2 WILD-TYPE" 
       TCGA-50-5939        TCGA-50-5941        TCGA-50-5942        TCGA-50-5944 
"SLC10A2 WILD-TYPE" "SLC10A2 WILD-TYPE" "SLC10A2 WILD-TYPE" "SLC10A2 WILD-TYPE" 
       TCGA-50-5946        TCGA-50-6590        TCGA-50-6591        TCGA-50-6592 
"SLC10A2 WILD-TYPE" "SLC10A2 WILD-TYPE" "SLC10A2 WILD-TYPE" "SLC10A2 WILD-TYPE" 
       TCGA-50-6593        TCGA-50-6594        TCGA-50-6595        TCGA-50-6597 
"SLC10A2 WILD-TYPE" "SLC10A2 WILD-TYPE" "SLC10A2 WILD-TYPE" "SLC10A2 WILD-TYPE" 
       TCGA-55-1592        TCGA-55-1594        TCGA-55-1595        TCGA-55-1596 
  "SLC10A2 MUTATED" "SLC10A2 WILD-TYPE" "SLC10A2 WILD-TYPE" "SLC10A2 WILD-TYPE" 
       TCGA-55-5899        TCGA-55-6543        TCGA-55-6642        TCGA-55-6712 
"SLC10A2 WILD-TYPE" "SLC10A2 WILD-TYPE" "SLC10A2 WILD-TYPE" "SLC10A2 WILD-TYPE" 
       TCGA-64-1676        TCGA-64-1677        TCGA-64-1678        TCGA-64-1680 
"SLC10A2 WILD-TYPE" "SLC10A2 WILD-TYPE" "SLC10A2 WILD-TYPE" "SLC10A2 WILD-TYPE" 
       TCGA-64-5774        TCGA-64-5775        TCGA-64-5778        TCGA-64-5779 
"SLC10A2 WILD-TYPE" "SLC10A2 WILD-TYPE"   "SLC10A2 MUTATED" "SLC10A2 WILD-TYPE" 
       TCGA-64-5781        TCGA-64-5815        TCGA-67-3770        TCGA-67-3771 
  "SLC10A2 MUTATED" "SLC10A2 WILD-TYPE" "SLC10A2 WILD-TYPE" "SLC10A2 WILD-TYPE" 
       TCGA-67-3772        TCGA-67-3773        TCGA-67-3774        TCGA-67-6215 
"SLC10A2 WILD-TYPE" "SLC10A2 WILD-TYPE" "SLC10A2 WILD-TYPE" "SLC10A2 WILD-TYPE" 
       TCGA-67-6216        TCGA-67-6217        TCGA-71-6725        TCGA-73-4658 
"SLC10A2 WILD-TYPE" "SLC10A2 WILD-TYPE" "SLC10A2 WILD-TYPE" "SLC10A2 WILD-TYPE" 
       TCGA-73-4659        TCGA-73-4662        TCGA-73-4666        TCGA-73-4668 
"SLC10A2 WILD-TYPE" "SLC10A2 WILD-TYPE" "SLC10A2 WILD-TYPE" "SLC10A2 WILD-TYPE" 
       TCGA-73-4670        TCGA-73-4675        TCGA-73-4676        TCGA-73-4677 
"SLC10A2 WILD-TYPE" "SLC10A2 WILD-TYPE" "SLC10A2 WILD-TYPE" "SLC10A2 WILD-TYPE" 
       TCGA-91-6828        TCGA-91-6829        TCGA-91-6831        TCGA-91-6835 
"SLC10A2 WILD-TYPE" "SLC10A2 WILD-TYPE" "SLC10A2 WILD-TYPE" "SLC10A2 WILD-TYPE" 
       TCGA-91-6836 
"SLC10A2 WILD-TYPE" 
       TCGA-05-4249        TCGA-05-4250        TCGA-05-4382        TCGA-05-4384 
"SLC10A2 WILD-TYPE" "SLC10A2 WILD-TYPE" "SLC10A2 WILD-TYPE" "SLC10A2 WILD-TYPE" 
       TCGA-05-4390        TCGA-05-4396        TCGA-05-4397        TCGA-05-4398 
"SLC10A2 WILD-TYPE" "SLC10A2 WILD-TYPE" "SLC10A2 WILD-TYPE" "SLC10A2 WILD-TYPE" 
       TCGA-05-4402        TCGA-05-4405        TCGA-05-4415        TCGA-05-4417 
"SLC10A2 WILD-TYPE" "SLC10A2 WILD-TYPE" "SLC10A2 WILD-TYPE" "SLC10A2 WILD-TYPE" 
       TCGA-05-4418        TCGA-05-4420        TCGA-05-4424        TCGA-05-4426 
"SLC10A2 WILD-TYPE" "SLC10A2 WILD-TYPE"   "SLC10A2 MUTATED" "SLC10A2 WILD-TYPE" 
       TCGA-05-4427        TCGA-05-4430        TCGA-05-4432        TCGA-05-4433 
  "SLC10A2 MUTATED" "SLC10A2 WILD-TYPE" "SLC10A2 WILD-TYPE" "SLC10A2 WILD-TYPE" 
       TCGA-05-4434        TCGA-05-5420        TCGA-05-5423        TCGA-05-5425 
"SLC10A2 WILD-TYPE" "SLC10A2 WILD-TYPE" "SLC10A2 WILD-TYPE" "SLC10A2 WILD-TYPE" 
       TCGA-05-5429        TCGA-05-5715        TCGA-35-3615        TCGA-35-4122 
"SLC10A2 WILD-TYPE" "SLC10A2 WILD-TYPE" "SLC10A2 WILD-TYPE" "SLC10A2 WILD-TYPE" 
       TCGA-35-4123        TCGA-35-5375        TCGA-38-4625        TCGA-38-4626 
"SLC10A2 WILD-TYPE" "SLC10A2 WILD-TYPE" "SLC10A2 WILD-TYPE" "SLC10A2 WILD-TYPE" 
       TCGA-38-4627        TCGA-38-4628        TCGA-38-4629        TCGA-38-4630 
"SLC10A2 WILD-TYPE" "SLC10A2 WILD-TYPE" "SLC10A2 WILD-TYPE" "SLC10A2 WILD-TYPE" 
       TCGA-38-4631        TCGA-38-4632        TCGA-38-6178        TCGA-44-2655 
"SLC10A2 WILD-TYPE" "SLC10A2 WILD-TYPE" "SLC10A2 WILD-TYPE" "SLC10A2 WILD-TYPE" 
       TCGA-44-2656        TCGA-44-2657        TCGA-44-2659        TCGA-44-2661 
  "SLC10A2 MUTATED" "SLC10A2 WILD-TYPE" "SLC10A2 WILD-TYPE" "SLC10A2 WILD-TYPE" 
       TCGA-44-2662        TCGA-44-2665        TCGA-44-2666        TCGA-44-2668 
"SLC10A2 WILD-TYPE" "SLC10A2 WILD-TYPE" "SLC10A2 WILD-TYPE" "SLC10A2 WILD-TYPE" 
       TCGA-44-3396        TCGA-44-3398        TCGA-44-3918        TCGA-44-3919 
"SLC10A2 WILD-TYPE" "SLC10A2 WILD-TYPE" "SLC10A2 WILD-TYPE" "SLC10A2 WILD-TYPE" 
       TCGA-44-4112        TCGA-44-5643        TCGA-44-5645        TCGA-44-6144 
"SLC10A2 WILD-TYPE" "SLC10A2 WILD-TYPE" "SLC10A2 WILD-TYPE" "SLC10A2 WILD-TYPE" 
       TCGA-44-6145        TCGA-44-6146        TCGA-44-6147        TCGA-44-6148 
"SLC10A2 WILD-TYPE" "SLC10A2 WILD-TYPE" "SLC10A2 WILD-TYPE" "SLC10A2 WILD-TYPE" 
       TCGA-44-6774        TCGA-44-6775        TCGA-44-6776        TCGA-44-6777 
"SLC10A2 WILD-TYPE" "SLC10A2 WILD-TYPE" "SLC10A2 WILD-TYPE" "SLC10A2 WILD-TYPE" 
       TCGA-44-6778        TCGA-44-6779        TCGA-49-4486        TCGA-49-4487 
"SLC10A2 WILD-TYPE" "SLC10A2 WILD-TYPE" "SLC10A2 WILD-TYPE" "SLC10A2 WILD-TYPE" 
       TCGA-49-4488        TCGA-49-4490        TCGA-49-4494        TCGA-49-4501 
"SLC10A2 WILD-TYPE" "SLC10A2 WILD-TYPE" "SLC10A2 WILD-TYPE" "SLC10A2 WILD-TYPE" 
       TCGA-49-4505        TCGA-49-4506        TCGA-49-4507        TCGA-49-4510 
"SLC10A2 WILD-TYPE" "SLC10A2 WILD-TYPE" "SLC10A2 WILD-TYPE" "SLC10A2 WILD-TYPE" 
       TCGA-49-4512        TCGA-49-4514        TCGA-49-6742        TCGA-49-6743 
"SLC10A2 WILD-TYPE" "SLC10A2 WILD-TYPE" "SLC10A2 WILD-TYPE"   "SLC10A2 MUTATED" 
       TCGA-49-6744        TCGA-49-6745        TCGA-50-5044        TCGA-50-5045 
"SLC10A2 WILD-TYPE" "SLC10A2 WILD-TYPE" "SLC10A2 WILD-TYPE" "SLC10A2 WILD-TYPE" 
       TCGA-50-5049        TCGA-50-5051        TCGA-50-5055        TCGA-50-5066 
"SLC10A2 WILD-TYPE" "SLC10A2 WILD-TYPE" "SLC10A2 WILD-TYPE" "SLC10A2 WILD-TYPE" 
       TCGA-50-5068        TCGA-50-5072        TCGA-50-5930        TCGA-50-5931 
"SLC10A2 WILD-TYPE" "SLC10A2 WILD-TYPE" "SLC10A2 WILD-TYPE" "SLC10A2 WILD-TYPE" 
       TCGA-50-5932        TCGA-50-5933        TCGA-50-5935        TCGA-50-5936 
"SLC10A2 WILD-TYPE" "SLC10A2 WILD-TYPE" "SLC10A2 WILD-TYPE" "SLC10A2 WILD-TYPE" 
       TCGA-50-5939        TCGA-50-5941        TCGA-50-5942        TCGA-50-5944 
"SLC10A2 WILD-TYPE" "SLC10A2 WILD-TYPE" "SLC10A2 WILD-TYPE" "SLC10A2 WILD-TYPE" 
       TCGA-50-5946        TCGA-50-6590        TCGA-50-6591        TCGA-50-6592 
"SLC10A2 WILD-TYPE" "SLC10A2 WILD-TYPE" "SLC10A2 WILD-TYPE" "SLC10A2 WILD-TYPE" 
       TCGA-50-6593        TCGA-50-6594        TCGA-50-6595        TCGA-50-6597 
"SLC10A2 WILD-TYPE" "SLC10A2 WILD-TYPE" "SLC10A2 WILD-TYPE" "SLC10A2 WILD-TYPE" 
       TCGA-55-1592        TCGA-55-1594        TCGA-55-1595        TCGA-55-1596 
  "SLC10A2 MUTATED" "SLC10A2 WILD-TYPE" "SLC10A2 WILD-TYPE" "SLC10A2 WILD-TYPE" 
       TCGA-55-5899        TCGA-55-6543        TCGA-55-6642        TCGA-55-6712 
"SLC10A2 WILD-TYPE" "SLC10A2 WILD-TYPE" "SLC10A2 WILD-TYPE" "SLC10A2 WILD-TYPE" 
       TCGA-64-1676        TCGA-64-1677        TCGA-64-1678        TCGA-64-1680 
"SLC10A2 WILD-TYPE" "SLC10A2 WILD-TYPE" "SLC10A2 WILD-TYPE" "SLC10A2 WILD-TYPE" 
       TCGA-64-5774        TCGA-64-5775        TCGA-64-5778        TCGA-64-5779 
"SLC10A2 WILD-TYPE" "SLC10A2 WILD-TYPE"   "SLC10A2 MUTATED" "SLC10A2 WILD-TYPE" 
       TCGA-64-5781        TCGA-64-5815        TCGA-67-3770        TCGA-67-3771 
  "SLC10A2 MUTATED" "SLC10A2 WILD-TYPE" "SLC10A2 WILD-TYPE" "SLC10A2 WILD-TYPE" 
       TCGA-67-3772        TCGA-67-3773        TCGA-67-3774        TCGA-67-6215 
"SLC10A2 WILD-TYPE" "SLC10A2 WILD-TYPE" "SLC10A2 WILD-TYPE" "SLC10A2 WILD-TYPE" 
       TCGA-67-6216        TCGA-67-6217        TCGA-71-6725        TCGA-73-4658 
"SLC10A2 WILD-TYPE" "SLC10A2 WILD-TYPE" "SLC10A2 WILD-TYPE" "SLC10A2 WILD-TYPE" 
       TCGA-73-4659        TCGA-73-4662        TCGA-73-4666        TCGA-73-4668 
"SLC10A2 WILD-TYPE" "SLC10A2 WILD-TYPE" "SLC10A2 WILD-TYPE" "SLC10A2 WILD-TYPE" 
       TCGA-73-4670        TCGA-73-4675        TCGA-73-4676        TCGA-73-4677 
"SLC10A2 WILD-TYPE" "SLC10A2 WILD-TYPE" "SLC10A2 WILD-TYPE" "SLC10A2 WILD-TYPE" 
       TCGA-91-6828        TCGA-91-6829        TCGA-91-6831        TCGA-91-6835 
"SLC10A2 WILD-TYPE" "SLC10A2 WILD-TYPE" "SLC10A2 WILD-TYPE" "SLC10A2 WILD-TYPE" 
       TCGA-91-6836 
"SLC10A2 WILD-TYPE" 
       TCGA-05-4249        TCGA-05-4250        TCGA-05-4382        TCGA-05-4384 
"SLC10A2 WILD-TYPE" "SLC10A2 WILD-TYPE" "SLC10A2 WILD-TYPE" "SLC10A2 WILD-TYPE" 
       TCGA-05-4390        TCGA-05-4396        TCGA-05-4397        TCGA-05-4398 
"SLC10A2 WILD-TYPE" "SLC10A2 WILD-TYPE" "SLC10A2 WILD-TYPE" "SLC10A2 WILD-TYPE" 
       TCGA-05-4402        TCGA-05-4405        TCGA-05-4415        TCGA-05-4417 
"SLC10A2 WILD-TYPE" "SLC10A2 WILD-TYPE" "SLC10A2 WILD-TYPE" "SLC10A2 WILD-TYPE" 
       TCGA-05-4418        TCGA-05-4420        TCGA-05-4424        TCGA-05-4426 
"SLC10A2 WILD-TYPE" "SLC10A2 WILD-TYPE"   "SLC10A2 MUTATED" "SLC10A2 WILD-TYPE" 
       TCGA-05-4427        TCGA-05-4430        TCGA-05-4432        TCGA-05-4433 
  "SLC10A2 MUTATED" "SLC10A2 WILD-TYPE" "SLC10A2 WILD-TYPE" "SLC10A2 WILD-TYPE" 
       TCGA-05-4434        TCGA-05-5420        TCGA-05-5423        TCGA-05-5425 
"SLC10A2 WILD-TYPE" "SLC10A2 WILD-TYPE" "SLC10A2 WILD-TYPE" "SLC10A2 WILD-TYPE" 
       TCGA-05-5429        TCGA-05-5715        TCGA-35-3615        TCGA-35-4122 
"SLC10A2 WILD-TYPE" "SLC10A2 WILD-TYPE" "SLC10A2 WILD-TYPE" "SLC10A2 WILD-TYPE" 
       TCGA-35-4123        TCGA-35-5375        TCGA-38-4625        TCGA-38-4626 
"SLC10A2 WILD-TYPE" "SLC10A2 WILD-TYPE" "SLC10A2 WILD-TYPE" "SLC10A2 WILD-TYPE" 
       TCGA-38-4627        TCGA-38-4628        TCGA-38-4629        TCGA-38-4630 
"SLC10A2 WILD-TYPE" "SLC10A2 WILD-TYPE" "SLC10A2 WILD-TYPE" "SLC10A2 WILD-TYPE" 
       TCGA-38-4631        TCGA-38-4632        TCGA-38-6178        TCGA-44-2655 
"SLC10A2 WILD-TYPE" "SLC10A2 WILD-TYPE" "SLC10A2 WILD-TYPE" "SLC10A2 WILD-TYPE" 
       TCGA-44-2656        TCGA-44-2657        TCGA-44-2659        TCGA-44-2661 
  "SLC10A2 MUTATED" "SLC10A2 WILD-TYPE" "SLC10A2 WILD-TYPE" "SLC10A2 WILD-TYPE" 
       TCGA-44-2662        TCGA-44-2665        TCGA-44-2666        TCGA-44-2668 
"SLC10A2 WILD-TYPE" "SLC10A2 WILD-TYPE" "SLC10A2 WILD-TYPE" "SLC10A2 WILD-TYPE" 
       TCGA-44-3396        TCGA-44-3398        TCGA-44-3918        TCGA-44-3919 
"SLC10A2 WILD-TYPE" "SLC10A2 WILD-TYPE" "SLC10A2 WILD-TYPE" "SLC10A2 WILD-TYPE" 
       TCGA-44-4112        TCGA-44-5643        TCGA-44-5645        TCGA-44-6144 
"SLC10A2 WILD-TYPE" "SLC10A2 WILD-TYPE" "SLC10A2 WILD-TYPE" "SLC10A2 WILD-TYPE" 
       TCGA-44-6145        TCGA-44-6146        TCGA-44-6147        TCGA-44-6148 
"SLC10A2 WILD-TYPE" "SLC10A2 WILD-TYPE" "SLC10A2 WILD-TYPE" "SLC10A2 WILD-TYPE" 
       TCGA-44-6774        TCGA-44-6775        TCGA-44-6776        TCGA-44-6777 
"SLC10A2 WILD-TYPE" "SLC10A2 WILD-TYPE" "SLC10A2 WILD-TYPE" "SLC10A2 WILD-TYPE" 
       TCGA-44-6778        TCGA-44-6779        TCGA-49-4486        TCGA-49-4487 
"SLC10A2 WILD-TYPE" "SLC10A2 WILD-TYPE" "SLC10A2 WILD-TYPE" "SLC10A2 WILD-TYPE" 
       TCGA-49-4488        TCGA-49-4490        TCGA-49-4494        TCGA-49-4501 
"SLC10A2 WILD-TYPE" "SLC10A2 WILD-TYPE" "SLC10A2 WILD-TYPE" "SLC10A2 WILD-TYPE" 
       TCGA-49-4505        TCGA-49-4506        TCGA-49-4507        TCGA-49-4510 
"SLC10A2 WILD-TYPE" "SLC10A2 WILD-TYPE" "SLC10A2 WILD-TYPE" "SLC10A2 WILD-TYPE" 
       TCGA-49-4512        TCGA-49-4514        TCGA-49-6742        TCGA-49-6743 
"SLC10A2 WILD-TYPE" "SLC10A2 WILD-TYPE" "SLC10A2 WILD-TYPE"   "SLC10A2 MUTATED" 
       TCGA-49-6744        TCGA-49-6745        TCGA-50-5044        TCGA-50-5045 
"SLC10A2 WILD-TYPE" "SLC10A2 WILD-TYPE" "SLC10A2 WILD-TYPE" "SLC10A2 WILD-TYPE" 
       TCGA-50-5049        TCGA-50-5051        TCGA-50-5055        TCGA-50-5066 
"SLC10A2 WILD-TYPE" "SLC10A2 WILD-TYPE" "SLC10A2 WILD-TYPE" "SLC10A2 WILD-TYPE" 
       TCGA-50-5068        TCGA-50-5072        TCGA-50-5930        TCGA-50-5931 
"SLC10A2 WILD-TYPE" "SLC10A2 WILD-TYPE" "SLC10A2 WILD-TYPE" "SLC10A2 WILD-TYPE" 
       TCGA-50-5932        TCGA-50-5933        TCGA-50-5935        TCGA-50-5936 
"SLC10A2 WILD-TYPE" "SLC10A2 WILD-TYPE" "SLC10A2 WILD-TYPE" "SLC10A2 WILD-TYPE" 
       TCGA-50-5939        TCGA-50-5941        TCGA-50-5942        TCGA-50-5944 
"SLC10A2 WILD-TYPE" "SLC10A2 WILD-TYPE" "SLC10A2 WILD-TYPE" "SLC10A2 WILD-TYPE" 
       TCGA-50-5946        TCGA-50-6590        TCGA-50-6591        TCGA-50-6592 
"SLC10A2 WILD-TYPE" "SLC10A2 WILD-TYPE" "SLC10A2 WILD-TYPE" "SLC10A2 WILD-TYPE" 
       TCGA-50-6593        TCGA-50-6594        TCGA-50-6595        TCGA-50-6597 
"SLC10A2 WILD-TYPE" "SLC10A2 WILD-TYPE" "SLC10A2 WILD-TYPE" "SLC10A2 WILD-TYPE" 
       TCGA-55-1592        TCGA-55-1594        TCGA-55-1595        TCGA-55-1596 
  "SLC10A2 MUTATED" "SLC10A2 WILD-TYPE" "SLC10A2 WILD-TYPE" "SLC10A2 WILD-TYPE" 
       TCGA-55-5899        TCGA-55-6543        TCGA-55-6642        TCGA-55-6712 
"SLC10A2 WILD-TYPE" "SLC10A2 WILD-TYPE" "SLC10A2 WILD-TYPE" "SLC10A2 WILD-TYPE" 
       TCGA-64-1676        TCGA-64-1677        TCGA-64-1678        TCGA-64-1680 
"SLC10A2 WILD-TYPE" "SLC10A2 WILD-TYPE" "SLC10A2 WILD-TYPE" "SLC10A2 WILD-TYPE" 
       TCGA-64-5774        TCGA-64-5775        TCGA-64-5778        TCGA-64-5779 
"SLC10A2 WILD-TYPE" "SLC10A2 WILD-TYPE"   "SLC10A2 MUTATED" "SLC10A2 WILD-TYPE" 
       TCGA-64-5781        TCGA-64-5815        TCGA-67-3770        TCGA-67-3771 
  "SLC10A2 MUTATED" "SLC10A2 WILD-TYPE" "SLC10A2 WILD-TYPE" "SLC10A2 WILD-TYPE" 
       TCGA-67-3772        TCGA-67-3773        TCGA-67-3774        TCGA-67-6215 
"SLC10A2 WILD-TYPE" "SLC10A2 WILD-TYPE" "SLC10A2 WILD-TYPE" "SLC10A2 WILD-TYPE" 
       TCGA-67-6216        TCGA-67-6217        TCGA-71-6725        TCGA-73-4658 
"SLC10A2 WILD-TYPE" "SLC10A2 WILD-TYPE" "SLC10A2 WILD-TYPE" "SLC10A2 WILD-TYPE" 
       TCGA-73-4659        TCGA-73-4662        TCGA-73-4666        TCGA-73-4668 
"SLC10A2 WILD-TYPE" "SLC10A2 WILD-TYPE" "SLC10A2 WILD-TYPE" "SLC10A2 WILD-TYPE" 
       TCGA-73-4670        TCGA-73-4675        TCGA-73-4676        TCGA-73-4677 
"SLC10A2 WILD-TYPE" "SLC10A2 WILD-TYPE" "SLC10A2 WILD-TYPE" "SLC10A2 WILD-TYPE" 
       TCGA-91-6828        TCGA-91-6829        TCGA-91-6831        TCGA-91-6835 
"SLC10A2 WILD-TYPE" "SLC10A2 WILD-TYPE" "SLC10A2 WILD-TYPE" "SLC10A2 WILD-TYPE" 
       TCGA-91-6836 
"SLC10A2 WILD-TYPE" 
[1] "hr=" "2.9"
D117V2, continuous
D117V3, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  SLC10A2 MUTATED      3    4
  SLC10A2 WILD-TYPE   90   75
        clus
vv       SLC10A2 MUTATED SLC10A2 WILD-TYPE
  FEMALE               3                90
  MALE                 4                75
D117V4, continuous
[1] "Remove cluster labels:" "SLC10A2 MUTATED"       
clus
  SLC10A2 MUTATED SLC10A2 WILD-TYPE 
                1                11 
       TCGA-35-4122        TCGA-35-4123        TCGA-35-5375        TCGA-64-1677 
"SLC10A2 WILD-TYPE" "SLC10A2 WILD-TYPE" "SLC10A2 WILD-TYPE" "SLC10A2 WILD-TYPE" 
       TCGA-71-6725        TCGA-73-4659        TCGA-73-4662        TCGA-73-4666 
"SLC10A2 WILD-TYPE" "SLC10A2 WILD-TYPE" "SLC10A2 WILD-TYPE" "SLC10A2 WILD-TYPE" 
       TCGA-73-4668        TCGA-73-4676        TCGA-75-5122 
"SLC10A2 WILD-TYPE" "SLC10A2 WILD-TYPE" "SLC10A2 WILD-TYPE" 
D117V5, multiclass
D117V6, multiclass
    clus
vv   SLC10A2 MUTATED SLC10A2 WILD-TYPE
  T1               1                40
  T2               5               103
  T3               1                13
  T4               0                 8
D117V7, multiclass
       clus
vv      SLC10A2 MUTATED SLC10A2 WILD-TYPE
  N0                  5                90
  N1                  1                36
  N2+N3               1                34
D117V8, multiclass
    clus
vv   SLC10A2 MUTATED SLC10A2 WILD-TYPE
  M0               6               131
  M1               0                 9
  MX               1                21
D117V9, multiclass
     clus
vv    SLC10A2 MUTATED SLC10A2 WILD-TYPE
  I                 4                84
  II                2                31
  III               1                38
  IV                0                 9
D117V10, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  SLC10A2 MUTATED      0    7
  SLC10A2 WILD-TYPE   16  149
     clus
vv    SLC10A2 MUTATED SLC10A2 WILD-TYPE
  NO                0                16
  YES               7               149
D117V11, continuous
D117V12, continuous
D117V13, multiclass
                                             clus
vv                                            SLC10A2 MUTATED SLC10A2 WILD-TYPE
  CURRENT REFORMED SMOKER FOR < OR = 15 YEARS               7                55
  CURRENT REFORMED SMOKER FOR > 15 YEARS                    0                46
  CURRENT SMOKER                                            0                28
  LIFELONG NON-SMOKER                                       0                24
D117V14, continuous

Clustering(118) Variable = SERPINB13 MUTATION ANALYSIS
D118V1, survival
                     sevent
clus2                  0  1
  SERPINB13 MUTATED    8  0
  SERPINB13 WILD-TYPE 91 50
  SERPINB13 MUTATED SERPINB13 WILD-TYPE 
                  8                 141 
  SERPINB13 MUTATED SERPINB13 WILD-TYPE 
                  0                  50 
$`SERPINB13 MUTATED`
TCGA-05-4398 TCGA-05-4417 TCGA-38-4626 TCGA-44-6774 TCGA-49-6743 TCGA-50-5072 
       47.05        14.93        85.32         5.42        12.13         8.05 
TCGA-67-3771 TCGA-73-4668 
        1.97        15.35 

$`SERPINB13 WILD-TYPE`
TCGA-05-4249 TCGA-05-4250 TCGA-05-4382 TCGA-05-4384 TCGA-05-4390 TCGA-05-4396 
       38.07         3.98        19.92        14.01        37.02         9.96 
TCGA-05-4397 TCGA-05-4402 TCGA-05-4405 TCGA-05-4415 TCGA-05-4418 TCGA-05-4420 
       24.03         8.02        20.05         2.96         8.98        29.95 
TCGA-05-4424 TCGA-05-4426 TCGA-05-4427 TCGA-05-4430 TCGA-05-4432 TCGA-05-4433 
       30.02        26.01        26.01        25.02        25.02        24.00 
TCGA-05-4434 TCGA-05-5420 TCGA-05-5423 TCGA-05-5425 TCGA-05-5429 TCGA-05-5715 
       15.02         1.02         4.96         2.96         0.99         2.04 
TCGA-35-3615 TCGA-35-4122 TCGA-35-4123 TCGA-35-5375 TCGA-38-4625 TCGA-38-4627 
        0.46         7.36         5.95         8.68        47.61        37.71 
TCGA-38-4628 TCGA-38-4629 TCGA-38-4630 TCGA-38-4631 TCGA-38-4632 TCGA-38-6178 
       49.02        28.37        35.28        11.64        44.61         5.19 
TCGA-44-2655 TCGA-44-2656 TCGA-44-2657 TCGA-44-2659 TCGA-44-2661 TCGA-44-2662 
       18.87        19.10        13.15        17.39         3.39        15.78 
TCGA-44-2665 TCGA-44-2666 TCGA-44-2668 TCGA-44-3396 TCGA-44-3398 TCGA-44-3918 
       13.15         3.19         8.09        10.22         8.32         6.44 
TCGA-44-3919 TCGA-44-4112 TCGA-44-5643 TCGA-44-5645 TCGA-44-6144 TCGA-44-6145 
        6.21         4.60         3.48         6.84         0.30         3.35 
TCGA-44-6146 TCGA-44-6147 TCGA-44-6148 TCGA-44-6775 TCGA-44-6776 TCGA-44-6777 
        9.93         7.76         3.12         2.70        63.72        32.45 
TCGA-44-6778 TCGA-44-6779 TCGA-49-4486 TCGA-49-4487 TCGA-49-4488 TCGA-49-4490 
       36.49        16.41        76.21        28.11        28.57        12.66 
TCGA-49-4494 TCGA-49-4501 TCGA-49-4505 TCGA-49-4506 TCGA-49-4507 TCGA-49-4510 
       35.54        46.72        14.07        32.84         8.81        29.46 
TCGA-49-4512 TCGA-49-4514 TCGA-49-6742 TCGA-49-6744 TCGA-49-6745 TCGA-50-5044 
       29.75        43.20        15.02        12.99         4.93        20.48 
TCGA-50-5045 TCGA-50-5049 TCGA-50-5051 TCGA-50-5055 TCGA-50-5066 TCGA-50-5068 
       71.47        48.82        14.96        25.81         9.76        49.28 
TCGA-50-5930 TCGA-50-5931 TCGA-50-5932 TCGA-50-5933 TCGA-50-5935 TCGA-50-5936 
        9.27         8.78        35.87        77.88        21.47         8.45 
TCGA-50-5939 TCGA-50-5941 TCGA-50-5942 TCGA-50-5944 TCGA-50-5946 TCGA-50-6590 
       15.12         9.37         4.44        12.26        11.47        42.31 
TCGA-50-6591 TCGA-50-6592 TCGA-50-6593 TCGA-50-6594 TCGA-50-6595 TCGA-50-6597 
        3.88        25.51        11.05        12.16         6.21        33.37 
TCGA-55-1592 TCGA-55-1594 TCGA-55-1595 TCGA-55-1596 TCGA-55-5899 TCGA-55-6543 
       23.05        38.73        48.62        45.17         2.86         0.07 
TCGA-55-6642 TCGA-55-6712 TCGA-64-1676 TCGA-64-1677 TCGA-64-1678 TCGA-64-1680 
       32.61         0.79        56.81        20.65        39.09        37.02 
TCGA-64-5774 TCGA-64-5775 TCGA-64-5778 TCGA-64-5779 TCGA-64-5781 TCGA-64-5815 
       83.84         0.10        30.44        16.67        39.52         7.33 
TCGA-67-3770 TCGA-67-3772 TCGA-67-3773 TCGA-67-3774 TCGA-67-6215 TCGA-67-6216 
        0.99         0.59         2.04         0.59         0.89         0.69 
TCGA-67-6217 TCGA-71-6725 TCGA-73-4658 TCGA-73-4659 TCGA-73-4662 TCGA-73-4666 
       13.87         2.01        52.57        23.38        29.95        20.28 
TCGA-73-4670 TCGA-73-4675 TCGA-73-4676 TCGA-73-4677 TCGA-91-6828 TCGA-91-6829 
        0.46         1.32         4.01         1.25         1.22        41.33 
TCGA-91-6831 TCGA-91-6835 TCGA-91-6836 
        1.28         1.15         0.36 

  SERPINB13 MUTATED SERPINB13 WILD-TYPE 
               1.97                0.07 
  SERPINB13 MUTATED SERPINB13 WILD-TYPE 
              85.32               83.84 
  SERPINB13 MUTATED SERPINB13 WILD-TYPE 
              13.53               13.87 
[1] "2.0 - 85.3 (13.5)" "0.1 - 83.8 (13.9)"
         TCGA-05-4249          TCGA-05-4250          TCGA-05-4382 
"SERPINB13 WILD-TYPE" "SERPINB13 WILD-TYPE" "SERPINB13 WILD-TYPE" 
         TCGA-05-4384          TCGA-05-4390          TCGA-05-4396 
"SERPINB13 WILD-TYPE" "SERPINB13 WILD-TYPE" "SERPINB13 WILD-TYPE" 
         TCGA-05-4397          TCGA-05-4398          TCGA-05-4402 
"SERPINB13 WILD-TYPE"   "SERPINB13 MUTATED" "SERPINB13 WILD-TYPE" 
         TCGA-05-4405          TCGA-05-4415          TCGA-05-4417 
"SERPINB13 WILD-TYPE" "SERPINB13 WILD-TYPE"   "SERPINB13 MUTATED" 
         TCGA-05-4418          TCGA-05-4420          TCGA-05-4424 
"SERPINB13 WILD-TYPE" "SERPINB13 WILD-TYPE" "SERPINB13 WILD-TYPE" 
         TCGA-05-4426          TCGA-05-4427          TCGA-05-4430 
"SERPINB13 WILD-TYPE" "SERPINB13 WILD-TYPE" "SERPINB13 WILD-TYPE" 
         TCGA-05-4432          TCGA-05-4433          TCGA-05-4434 
"SERPINB13 WILD-TYPE" "SERPINB13 WILD-TYPE" "SERPINB13 WILD-TYPE" 
         TCGA-05-5420          TCGA-05-5423          TCGA-05-5425 
"SERPINB13 WILD-TYPE" "SERPINB13 WILD-TYPE" "SERPINB13 WILD-TYPE" 
         TCGA-05-5429          TCGA-05-5715          TCGA-35-3615 
"SERPINB13 WILD-TYPE" "SERPINB13 WILD-TYPE" "SERPINB13 WILD-TYPE" 
         TCGA-35-4122          TCGA-35-4123          TCGA-35-5375 
"SERPINB13 WILD-TYPE" "SERPINB13 WILD-TYPE" "SERPINB13 WILD-TYPE" 
         TCGA-38-4625          TCGA-38-4626          TCGA-38-4627 
"SERPINB13 WILD-TYPE"   "SERPINB13 MUTATED" "SERPINB13 WILD-TYPE" 
         TCGA-38-4628          TCGA-38-4629          TCGA-38-4630 
"SERPINB13 WILD-TYPE" "SERPINB13 WILD-TYPE" "SERPINB13 WILD-TYPE" 
         TCGA-38-4631          TCGA-38-4632          TCGA-38-6178 
"SERPINB13 WILD-TYPE" "SERPINB13 WILD-TYPE" "SERPINB13 WILD-TYPE" 
         TCGA-44-2655          TCGA-44-2656          TCGA-44-2657 
"SERPINB13 WILD-TYPE" "SERPINB13 WILD-TYPE" "SERPINB13 WILD-TYPE" 
         TCGA-44-2659          TCGA-44-2661          TCGA-44-2662 
"SERPINB13 WILD-TYPE" "SERPINB13 WILD-TYPE" "SERPINB13 WILD-TYPE" 
         TCGA-44-2665          TCGA-44-2666          TCGA-44-2668 
"SERPINB13 WILD-TYPE" "SERPINB13 WILD-TYPE" "SERPINB13 WILD-TYPE" 
         TCGA-44-3396          TCGA-44-3398          TCGA-44-3918 
"SERPINB13 WILD-TYPE" "SERPINB13 WILD-TYPE" "SERPINB13 WILD-TYPE" 
         TCGA-44-3919          TCGA-44-4112          TCGA-44-5643 
"SERPINB13 WILD-TYPE" "SERPINB13 WILD-TYPE" "SERPINB13 WILD-TYPE" 
         TCGA-44-5645          TCGA-44-6144          TCGA-44-6145 
"SERPINB13 WILD-TYPE" "SERPINB13 WILD-TYPE" "SERPINB13 WILD-TYPE" 
         TCGA-44-6146          TCGA-44-6147          TCGA-44-6148 
"SERPINB13 WILD-TYPE" "SERPINB13 WILD-TYPE" "SERPINB13 WILD-TYPE" 
         TCGA-44-6774          TCGA-44-6775          TCGA-44-6776 
  "SERPINB13 MUTATED" "SERPINB13 WILD-TYPE" "SERPINB13 WILD-TYPE" 
         TCGA-44-6777          TCGA-44-6778          TCGA-44-6779 
"SERPINB13 WILD-TYPE" "SERPINB13 WILD-TYPE" "SERPINB13 WILD-TYPE" 
         TCGA-49-4486          TCGA-49-4487          TCGA-49-4488 
"SERPINB13 WILD-TYPE" "SERPINB13 WILD-TYPE" "SERPINB13 WILD-TYPE" 
         TCGA-49-4490          TCGA-49-4494          TCGA-49-4501 
"SERPINB13 WILD-TYPE" "SERPINB13 WILD-TYPE" "SERPINB13 WILD-TYPE" 
         TCGA-49-4505          TCGA-49-4506          TCGA-49-4507 
"SERPINB13 WILD-TYPE" "SERPINB13 WILD-TYPE" "SERPINB13 WILD-TYPE" 
         TCGA-49-4510          TCGA-49-4512          TCGA-49-4514 
"SERPINB13 WILD-TYPE" "SERPINB13 WILD-TYPE" "SERPINB13 WILD-TYPE" 
         TCGA-49-6742          TCGA-49-6743          TCGA-49-6744 
"SERPINB13 WILD-TYPE"   "SERPINB13 MUTATED" "SERPINB13 WILD-TYPE" 
         TCGA-49-6745          TCGA-50-5044          TCGA-50-5045 
"SERPINB13 WILD-TYPE" "SERPINB13 WILD-TYPE" "SERPINB13 WILD-TYPE" 
         TCGA-50-5049          TCGA-50-5051          TCGA-50-5055 
"SERPINB13 WILD-TYPE" "SERPINB13 WILD-TYPE" "SERPINB13 WILD-TYPE" 
         TCGA-50-5066          TCGA-50-5068          TCGA-50-5072 
"SERPINB13 WILD-TYPE" "SERPINB13 WILD-TYPE"   "SERPINB13 MUTATED" 
         TCGA-50-5930          TCGA-50-5931          TCGA-50-5932 
"SERPINB13 WILD-TYPE" "SERPINB13 WILD-TYPE" "SERPINB13 WILD-TYPE" 
         TCGA-50-5933          TCGA-50-5935          TCGA-50-5936 
"SERPINB13 WILD-TYPE" "SERPINB13 WILD-TYPE" "SERPINB13 WILD-TYPE" 
         TCGA-50-5939          TCGA-50-5941          TCGA-50-5942 
"SERPINB13 WILD-TYPE" "SERPINB13 WILD-TYPE" "SERPINB13 WILD-TYPE" 
         TCGA-50-5944          TCGA-50-5946          TCGA-50-6590 
"SERPINB13 WILD-TYPE" "SERPINB13 WILD-TYPE" "SERPINB13 WILD-TYPE" 
         TCGA-50-6591          TCGA-50-6592          TCGA-50-6593 
"SERPINB13 WILD-TYPE" "SERPINB13 WILD-TYPE" "SERPINB13 WILD-TYPE" 
         TCGA-50-6594          TCGA-50-6595          TCGA-50-6597 
"SERPINB13 WILD-TYPE" "SERPINB13 WILD-TYPE" "SERPINB13 WILD-TYPE" 
         TCGA-55-1592          TCGA-55-1594          TCGA-55-1595 
"SERPINB13 WILD-TYPE" "SERPINB13 WILD-TYPE" "SERPINB13 WILD-TYPE" 
         TCGA-55-1596          TCGA-55-5899          TCGA-55-6543 
"SERPINB13 WILD-TYPE" "SERPINB13 WILD-TYPE" "SERPINB13 WILD-TYPE" 
         TCGA-55-6642          TCGA-55-6712          TCGA-64-1676 
"SERPINB13 WILD-TYPE" "SERPINB13 WILD-TYPE" "SERPINB13 WILD-TYPE" 
         TCGA-64-1677          TCGA-64-1678          TCGA-64-1680 
"SERPINB13 WILD-TYPE" "SERPINB13 WILD-TYPE" "SERPINB13 WILD-TYPE" 
         TCGA-64-5774          TCGA-64-5775          TCGA-64-5778 
"SERPINB13 WILD-TYPE" "SERPINB13 WILD-TYPE" "SERPINB13 WILD-TYPE" 
         TCGA-64-5779          TCGA-64-5781          TCGA-64-5815 
"SERPINB13 WILD-TYPE" "SERPINB13 WILD-TYPE" "SERPINB13 WILD-TYPE" 
         TCGA-67-3770          TCGA-67-3771          TCGA-67-3772 
"SERPINB13 WILD-TYPE"   "SERPINB13 MUTATED" "SERPINB13 WILD-TYPE" 
         TCGA-67-3773          TCGA-67-3774          TCGA-67-6215 
"SERPINB13 WILD-TYPE" "SERPINB13 WILD-TYPE" "SERPINB13 WILD-TYPE" 
         TCGA-67-6216          TCGA-67-6217          TCGA-71-6725 
"SERPINB13 WILD-TYPE" "SERPINB13 WILD-TYPE" "SERPINB13 WILD-TYPE" 
         TCGA-73-4658          TCGA-73-4659          TCGA-73-4662 
"SERPINB13 WILD-TYPE" "SERPINB13 WILD-TYPE" "SERPINB13 WILD-TYPE" 
         TCGA-73-4666          TCGA-73-4668          TCGA-73-4670 
"SERPINB13 WILD-TYPE"   "SERPINB13 MUTATED" "SERPINB13 WILD-TYPE" 
         TCGA-73-4675          TCGA-73-4676          TCGA-73-4677 
"SERPINB13 WILD-TYPE" "SERPINB13 WILD-TYPE" "SERPINB13 WILD-TYPE" 
         TCGA-91-6828          TCGA-91-6829          TCGA-91-6831 
"SERPINB13 WILD-TYPE" "SERPINB13 WILD-TYPE" "SERPINB13 WILD-TYPE" 
         TCGA-91-6835          TCGA-91-6836 
"SERPINB13 WILD-TYPE" "SERPINB13 WILD-TYPE" 
         TCGA-05-4249          TCGA-05-4250          TCGA-05-4382 
"SERPINB13 WILD-TYPE" "SERPINB13 WILD-TYPE" "SERPINB13 WILD-TYPE" 
         TCGA-05-4384          TCGA-05-4390          TCGA-05-4396 
"SERPINB13 WILD-TYPE" "SERPINB13 WILD-TYPE" "SERPINB13 WILD-TYPE" 
         TCGA-05-4397          TCGA-05-4398          TCGA-05-4402 
"SERPINB13 WILD-TYPE"   "SERPINB13 MUTATED" "SERPINB13 WILD-TYPE" 
         TCGA-05-4405          TCGA-05-4415          TCGA-05-4417 
"SERPINB13 WILD-TYPE" "SERPINB13 WILD-TYPE"   "SERPINB13 MUTATED" 
         TCGA-05-4418          TCGA-05-4420          TCGA-05-4424 
"SERPINB13 WILD-TYPE" "SERPINB13 WILD-TYPE" "SERPINB13 WILD-TYPE" 
         TCGA-05-4426          TCGA-05-4427          TCGA-05-4430 
"SERPINB13 WILD-TYPE" "SERPINB13 WILD-TYPE" "SERPINB13 WILD-TYPE" 
         TCGA-05-4432          TCGA-05-4433          TCGA-05-4434 
"SERPINB13 WILD-TYPE" "SERPINB13 WILD-TYPE" "SERPINB13 WILD-TYPE" 
         TCGA-05-5420          TCGA-05-5423          TCGA-05-5425 
"SERPINB13 WILD-TYPE" "SERPINB13 WILD-TYPE" "SERPINB13 WILD-TYPE" 
         TCGA-05-5429          TCGA-05-5715          TCGA-35-3615 
"SERPINB13 WILD-TYPE" "SERPINB13 WILD-TYPE" "SERPINB13 WILD-TYPE" 
         TCGA-35-4122          TCGA-35-4123          TCGA-35-5375 
"SERPINB13 WILD-TYPE" "SERPINB13 WILD-TYPE" "SERPINB13 WILD-TYPE" 
         TCGA-38-4625          TCGA-38-4626          TCGA-38-4627 
"SERPINB13 WILD-TYPE"   "SERPINB13 MUTATED" "SERPINB13 WILD-TYPE" 
         TCGA-38-4628          TCGA-38-4629          TCGA-38-4630 
"SERPINB13 WILD-TYPE" "SERPINB13 WILD-TYPE" "SERPINB13 WILD-TYPE" 
         TCGA-38-4631          TCGA-38-4632          TCGA-38-6178 
"SERPINB13 WILD-TYPE" "SERPINB13 WILD-TYPE" "SERPINB13 WILD-TYPE" 
         TCGA-44-2655          TCGA-44-2656          TCGA-44-2657 
"SERPINB13 WILD-TYPE" "SERPINB13 WILD-TYPE" "SERPINB13 WILD-TYPE" 
         TCGA-44-2659          TCGA-44-2661          TCGA-44-2662 
"SERPINB13 WILD-TYPE" "SERPINB13 WILD-TYPE" "SERPINB13 WILD-TYPE" 
         TCGA-44-2665          TCGA-44-2666          TCGA-44-2668 
"SERPINB13 WILD-TYPE" "SERPINB13 WILD-TYPE" "SERPINB13 WILD-TYPE" 
         TCGA-44-3396          TCGA-44-3398          TCGA-44-3918 
"SERPINB13 WILD-TYPE" "SERPINB13 WILD-TYPE" "SERPINB13 WILD-TYPE" 
         TCGA-44-3919          TCGA-44-4112          TCGA-44-5643 
"SERPINB13 WILD-TYPE" "SERPINB13 WILD-TYPE" "SERPINB13 WILD-TYPE" 
         TCGA-44-5645          TCGA-44-6144          TCGA-44-6145 
"SERPINB13 WILD-TYPE" "SERPINB13 WILD-TYPE" "SERPINB13 WILD-TYPE" 
         TCGA-44-6146          TCGA-44-6147          TCGA-44-6148 
"SERPINB13 WILD-TYPE" "SERPINB13 WILD-TYPE" "SERPINB13 WILD-TYPE" 
         TCGA-44-6774          TCGA-44-6775          TCGA-44-6776 
  "SERPINB13 MUTATED" "SERPINB13 WILD-TYPE" "SERPINB13 WILD-TYPE" 
         TCGA-44-6777          TCGA-44-6778          TCGA-44-6779 
"SERPINB13 WILD-TYPE" "SERPINB13 WILD-TYPE" "SERPINB13 WILD-TYPE" 
         TCGA-49-4486          TCGA-49-4487          TCGA-49-4488 
"SERPINB13 WILD-TYPE" "SERPINB13 WILD-TYPE" "SERPINB13 WILD-TYPE" 
         TCGA-49-4490          TCGA-49-4494          TCGA-49-4501 
"SERPINB13 WILD-TYPE" "SERPINB13 WILD-TYPE" "SERPINB13 WILD-TYPE" 
         TCGA-49-4505          TCGA-49-4506          TCGA-49-4507 
"SERPINB13 WILD-TYPE" "SERPINB13 WILD-TYPE" "SERPINB13 WILD-TYPE" 
         TCGA-49-4510          TCGA-49-4512          TCGA-49-4514 
"SERPINB13 WILD-TYPE" "SERPINB13 WILD-TYPE" "SERPINB13 WILD-TYPE" 
         TCGA-49-6742          TCGA-49-6743          TCGA-49-6744 
"SERPINB13 WILD-TYPE"   "SERPINB13 MUTATED" "SERPINB13 WILD-TYPE" 
         TCGA-49-6745          TCGA-50-5044          TCGA-50-5045 
"SERPINB13 WILD-TYPE" "SERPINB13 WILD-TYPE" "SERPINB13 WILD-TYPE" 
         TCGA-50-5049          TCGA-50-5051          TCGA-50-5055 
"SERPINB13 WILD-TYPE" "SERPINB13 WILD-TYPE" "SERPINB13 WILD-TYPE" 
         TCGA-50-5066          TCGA-50-5068          TCGA-50-5072 
"SERPINB13 WILD-TYPE" "SERPINB13 WILD-TYPE"   "SERPINB13 MUTATED" 
         TCGA-50-5930          TCGA-50-5931          TCGA-50-5932 
"SERPINB13 WILD-TYPE" "SERPINB13 WILD-TYPE" "SERPINB13 WILD-TYPE" 
         TCGA-50-5933          TCGA-50-5935          TCGA-50-5936 
"SERPINB13 WILD-TYPE" "SERPINB13 WILD-TYPE" "SERPINB13 WILD-TYPE" 
         TCGA-50-5939          TCGA-50-5941          TCGA-50-5942 
"SERPINB13 WILD-TYPE" "SERPINB13 WILD-TYPE" "SERPINB13 WILD-TYPE" 
         TCGA-50-5944          TCGA-50-5946          TCGA-50-6590 
"SERPINB13 WILD-TYPE" "SERPINB13 WILD-TYPE" "SERPINB13 WILD-TYPE" 
         TCGA-50-6591          TCGA-50-6592          TCGA-50-6593 
"SERPINB13 WILD-TYPE" "SERPINB13 WILD-TYPE" "SERPINB13 WILD-TYPE" 
         TCGA-50-6594          TCGA-50-6595          TCGA-50-6597 
"SERPINB13 WILD-TYPE" "SERPINB13 WILD-TYPE" "SERPINB13 WILD-TYPE" 
         TCGA-55-1592          TCGA-55-1594          TCGA-55-1595 
"SERPINB13 WILD-TYPE" "SERPINB13 WILD-TYPE" "SERPINB13 WILD-TYPE" 
         TCGA-55-1596          TCGA-55-5899          TCGA-55-6543 
"SERPINB13 WILD-TYPE" "SERPINB13 WILD-TYPE" "SERPINB13 WILD-TYPE" 
         TCGA-55-6642          TCGA-55-6712          TCGA-64-1676 
"SERPINB13 WILD-TYPE" "SERPINB13 WILD-TYPE" "SERPINB13 WILD-TYPE" 
         TCGA-64-1677          TCGA-64-1678          TCGA-64-1680 
"SERPINB13 WILD-TYPE" "SERPINB13 WILD-TYPE" "SERPINB13 WILD-TYPE" 
         TCGA-64-5774          TCGA-64-5775          TCGA-64-5778 
"SERPINB13 WILD-TYPE" "SERPINB13 WILD-TYPE" "SERPINB13 WILD-TYPE" 
         TCGA-64-5779          TCGA-64-5781          TCGA-64-5815 
"SERPINB13 WILD-TYPE" "SERPINB13 WILD-TYPE" "SERPINB13 WILD-TYPE" 
         TCGA-67-3770          TCGA-67-3771          TCGA-67-3772 
"SERPINB13 WILD-TYPE"   "SERPINB13 MUTATED" "SERPINB13 WILD-TYPE" 
         TCGA-67-3773          TCGA-67-3774          TCGA-67-6215 
"SERPINB13 WILD-TYPE" "SERPINB13 WILD-TYPE" "SERPINB13 WILD-TYPE" 
         TCGA-67-6216          TCGA-67-6217          TCGA-71-6725 
"SERPINB13 WILD-TYPE" "SERPINB13 WILD-TYPE" "SERPINB13 WILD-TYPE" 
         TCGA-73-4658          TCGA-73-4659          TCGA-73-4662 
"SERPINB13 WILD-TYPE" "SERPINB13 WILD-TYPE" "SERPINB13 WILD-TYPE" 
         TCGA-73-4666          TCGA-73-4668          TCGA-73-4670 
"SERPINB13 WILD-TYPE"   "SERPINB13 MUTATED" "SERPINB13 WILD-TYPE" 
         TCGA-73-4675          TCGA-73-4676          TCGA-73-4677 
"SERPINB13 WILD-TYPE" "SERPINB13 WILD-TYPE" "SERPINB13 WILD-TYPE" 
         TCGA-91-6828          TCGA-91-6829          TCGA-91-6831 
"SERPINB13 WILD-TYPE" "SERPINB13 WILD-TYPE" "SERPINB13 WILD-TYPE" 
         TCGA-91-6835          TCGA-91-6836 
"SERPINB13 WILD-TYPE" "SERPINB13 WILD-TYPE" 
         TCGA-05-4249          TCGA-05-4250          TCGA-05-4382 
"SERPINB13 WILD-TYPE" "SERPINB13 WILD-TYPE" "SERPINB13 WILD-TYPE" 
         TCGA-05-4384          TCGA-05-4390          TCGA-05-4396 
"SERPINB13 WILD-TYPE" "SERPINB13 WILD-TYPE" "SERPINB13 WILD-TYPE" 
         TCGA-05-4397          TCGA-05-4398          TCGA-05-4402 
"SERPINB13 WILD-TYPE"   "SERPINB13 MUTATED" "SERPINB13 WILD-TYPE" 
         TCGA-05-4405          TCGA-05-4415          TCGA-05-4417 
"SERPINB13 WILD-TYPE" "SERPINB13 WILD-TYPE"   "SERPINB13 MUTATED" 
         TCGA-05-4418          TCGA-05-4420          TCGA-05-4424 
"SERPINB13 WILD-TYPE" "SERPINB13 WILD-TYPE" "SERPINB13 WILD-TYPE" 
         TCGA-05-4426          TCGA-05-4427          TCGA-05-4430 
"SERPINB13 WILD-TYPE" "SERPINB13 WILD-TYPE" "SERPINB13 WILD-TYPE" 
         TCGA-05-4432          TCGA-05-4433          TCGA-05-4434 
"SERPINB13 WILD-TYPE" "SERPINB13 WILD-TYPE" "SERPINB13 WILD-TYPE" 
         TCGA-05-5420          TCGA-05-5423          TCGA-05-5425 
"SERPINB13 WILD-TYPE" "SERPINB13 WILD-TYPE" "SERPINB13 WILD-TYPE" 
         TCGA-05-5429          TCGA-05-5715          TCGA-35-3615 
"SERPINB13 WILD-TYPE" "SERPINB13 WILD-TYPE" "SERPINB13 WILD-TYPE" 
         TCGA-35-4122          TCGA-35-4123          TCGA-35-5375 
"SERPINB13 WILD-TYPE" "SERPINB13 WILD-TYPE" "SERPINB13 WILD-TYPE" 
         TCGA-38-4625          TCGA-38-4626          TCGA-38-4627 
"SERPINB13 WILD-TYPE"   "SERPINB13 MUTATED" "SERPINB13 WILD-TYPE" 
         TCGA-38-4628          TCGA-38-4629          TCGA-38-4630 
"SERPINB13 WILD-TYPE" "SERPINB13 WILD-TYPE" "SERPINB13 WILD-TYPE" 
         TCGA-38-4631          TCGA-38-4632          TCGA-38-6178 
"SERPINB13 WILD-TYPE" "SERPINB13 WILD-TYPE" "SERPINB13 WILD-TYPE" 
         TCGA-44-2655          TCGA-44-2656          TCGA-44-2657 
"SERPINB13 WILD-TYPE" "SERPINB13 WILD-TYPE" "SERPINB13 WILD-TYPE" 
         TCGA-44-2659          TCGA-44-2661          TCGA-44-2662 
"SERPINB13 WILD-TYPE" "SERPINB13 WILD-TYPE" "SERPINB13 WILD-TYPE" 
         TCGA-44-2665          TCGA-44-2666          TCGA-44-2668 
"SERPINB13 WILD-TYPE" "SERPINB13 WILD-TYPE" "SERPINB13 WILD-TYPE" 
         TCGA-44-3396          TCGA-44-3398          TCGA-44-3918 
"SERPINB13 WILD-TYPE" "SERPINB13 WILD-TYPE" "SERPINB13 WILD-TYPE" 
         TCGA-44-3919          TCGA-44-4112          TCGA-44-5643 
"SERPINB13 WILD-TYPE" "SERPINB13 WILD-TYPE" "SERPINB13 WILD-TYPE" 
         TCGA-44-5645          TCGA-44-6144          TCGA-44-6145 
"SERPINB13 WILD-TYPE" "SERPINB13 WILD-TYPE" "SERPINB13 WILD-TYPE" 
         TCGA-44-6146          TCGA-44-6147          TCGA-44-6148 
"SERPINB13 WILD-TYPE" "SERPINB13 WILD-TYPE" "SERPINB13 WILD-TYPE" 
         TCGA-44-6774          TCGA-44-6775          TCGA-44-6776 
  "SERPINB13 MUTATED" "SERPINB13 WILD-TYPE" "SERPINB13 WILD-TYPE" 
         TCGA-44-6777          TCGA-44-6778          TCGA-44-6779 
"SERPINB13 WILD-TYPE" "SERPINB13 WILD-TYPE" "SERPINB13 WILD-TYPE" 
         TCGA-49-4486          TCGA-49-4487          TCGA-49-4488 
"SERPINB13 WILD-TYPE" "SERPINB13 WILD-TYPE" "SERPINB13 WILD-TYPE" 
         TCGA-49-4490          TCGA-49-4494          TCGA-49-4501 
"SERPINB13 WILD-TYPE" "SERPINB13 WILD-TYPE" "SERPINB13 WILD-TYPE" 
         TCGA-49-4505          TCGA-49-4506          TCGA-49-4507 
"SERPINB13 WILD-TYPE" "SERPINB13 WILD-TYPE" "SERPINB13 WILD-TYPE" 
         TCGA-49-4510          TCGA-49-4512          TCGA-49-4514 
"SERPINB13 WILD-TYPE" "SERPINB13 WILD-TYPE" "SERPINB13 WILD-TYPE" 
         TCGA-49-6742          TCGA-49-6743          TCGA-49-6744 
"SERPINB13 WILD-TYPE"   "SERPINB13 MUTATED" "SERPINB13 WILD-TYPE" 
         TCGA-49-6745          TCGA-50-5044          TCGA-50-5045 
"SERPINB13 WILD-TYPE" "SERPINB13 WILD-TYPE" "SERPINB13 WILD-TYPE" 
         TCGA-50-5049          TCGA-50-5051          TCGA-50-5055 
"SERPINB13 WILD-TYPE" "SERPINB13 WILD-TYPE" "SERPINB13 WILD-TYPE" 
         TCGA-50-5066          TCGA-50-5068          TCGA-50-5072 
"SERPINB13 WILD-TYPE" "SERPINB13 WILD-TYPE"   "SERPINB13 MUTATED" 
         TCGA-50-5930          TCGA-50-5931          TCGA-50-5932 
"SERPINB13 WILD-TYPE" "SERPINB13 WILD-TYPE" "SERPINB13 WILD-TYPE" 
         TCGA-50-5933          TCGA-50-5935          TCGA-50-5936 
"SERPINB13 WILD-TYPE" "SERPINB13 WILD-TYPE" "SERPINB13 WILD-TYPE" 
         TCGA-50-5939          TCGA-50-5941          TCGA-50-5942 
"SERPINB13 WILD-TYPE" "SERPINB13 WILD-TYPE" "SERPINB13 WILD-TYPE" 
         TCGA-50-5944          TCGA-50-5946          TCGA-50-6590 
"SERPINB13 WILD-TYPE" "SERPINB13 WILD-TYPE" "SERPINB13 WILD-TYPE" 
         TCGA-50-6591          TCGA-50-6592          TCGA-50-6593 
"SERPINB13 WILD-TYPE" "SERPINB13 WILD-TYPE" "SERPINB13 WILD-TYPE" 
         TCGA-50-6594          TCGA-50-6595          TCGA-50-6597 
"SERPINB13 WILD-TYPE" "SERPINB13 WILD-TYPE" "SERPINB13 WILD-TYPE" 
         TCGA-55-1592          TCGA-55-1594          TCGA-55-1595 
"SERPINB13 WILD-TYPE" "SERPINB13 WILD-TYPE" "SERPINB13 WILD-TYPE" 
         TCGA-55-1596          TCGA-55-5899          TCGA-55-6543 
"SERPINB13 WILD-TYPE" "SERPINB13 WILD-TYPE" "SERPINB13 WILD-TYPE" 
         TCGA-55-6642          TCGA-55-6712          TCGA-64-1676 
"SERPINB13 WILD-TYPE" "SERPINB13 WILD-TYPE" "SERPINB13 WILD-TYPE" 
         TCGA-64-1677          TCGA-64-1678          TCGA-64-1680 
"SERPINB13 WILD-TYPE" "SERPINB13 WILD-TYPE" "SERPINB13 WILD-TYPE" 
         TCGA-64-5774          TCGA-64-5775          TCGA-64-5778 
"SERPINB13 WILD-TYPE" "SERPINB13 WILD-TYPE" "SERPINB13 WILD-TYPE" 
         TCGA-64-5779          TCGA-64-5781          TCGA-64-5815 
"SERPINB13 WILD-TYPE" "SERPINB13 WILD-TYPE" "SERPINB13 WILD-TYPE" 
         TCGA-67-3770          TCGA-67-3771          TCGA-67-3772 
"SERPINB13 WILD-TYPE"   "SERPINB13 MUTATED" "SERPINB13 WILD-TYPE" 
         TCGA-67-3773          TCGA-67-3774          TCGA-67-6215 
"SERPINB13 WILD-TYPE" "SERPINB13 WILD-TYPE" "SERPINB13 WILD-TYPE" 
         TCGA-67-6216          TCGA-67-6217          TCGA-71-6725 
"SERPINB13 WILD-TYPE" "SERPINB13 WILD-TYPE" "SERPINB13 WILD-TYPE" 
         TCGA-73-4658          TCGA-73-4659          TCGA-73-4662 
"SERPINB13 WILD-TYPE" "SERPINB13 WILD-TYPE" "SERPINB13 WILD-TYPE" 
         TCGA-73-4666          TCGA-73-4668          TCGA-73-4670 
"SERPINB13 WILD-TYPE"   "SERPINB13 MUTATED" "SERPINB13 WILD-TYPE" 
         TCGA-73-4675          TCGA-73-4676          TCGA-73-4677 
"SERPINB13 WILD-TYPE" "SERPINB13 WILD-TYPE" "SERPINB13 WILD-TYPE" 
         TCGA-91-6828          TCGA-91-6829          TCGA-91-6831 
"SERPINB13 WILD-TYPE" "SERPINB13 WILD-TYPE" "SERPINB13 WILD-TYPE" 
         TCGA-91-6835          TCGA-91-6836 
"SERPINB13 WILD-TYPE" "SERPINB13 WILD-TYPE" 
[1] "hr="     "8.1e+07"
D118V2, continuous
D118V3, binary
[1] "tbl2"
                     cls
clus                  [,1] [,2]
  SERPINB13 MUTATED      7    2
  SERPINB13 WILD-TYPE   86   77
        clus
vv       SERPINB13 MUTATED SERPINB13 WILD-TYPE
  FEMALE                 7                  86
  MALE                   2                  77
D118V4, continuous
[1] "Remove cluster labels:" "SERPINB13 MUTATED"     
clus
  SERPINB13 MUTATED SERPINB13 WILD-TYPE 
                  2                  10 
         TCGA-35-4122          TCGA-35-4123          TCGA-35-5375 
"SERPINB13 WILD-TYPE" "SERPINB13 WILD-TYPE" "SERPINB13 WILD-TYPE" 
         TCGA-64-1677          TCGA-64-5778          TCGA-71-6725 
"SERPINB13 WILD-TYPE" "SERPINB13 WILD-TYPE" "SERPINB13 WILD-TYPE" 
         TCGA-73-4659          TCGA-73-4662          TCGA-73-4666 
"SERPINB13 WILD-TYPE" "SERPINB13 WILD-TYPE" "SERPINB13 WILD-TYPE" 
         TCGA-73-4676 
"SERPINB13 WILD-TYPE" 
D118V5, multiclass
D118V6, multiclass
    clus
vv   SERPINB13 MUTATED SERPINB13 WILD-TYPE
  T1                 3                  38
  T2                 5                 103
  T3                 0                  14
  T4                 1                   7
D118V7, multiclass
       clus
vv      SERPINB13 MUTATED SERPINB13 WILD-TYPE
  N0                    4                  91
  N1                    1                  36
  N2+N3                 4                  31
D118V8, multiclass
    clus
vv   SERPINB13 MUTATED SERPINB13 WILD-TYPE
  M0                 8                 129
  M1                 0                   9
  MX                 1                  21
D118V9, multiclass
     clus
vv    SERPINB13 MUTATED SERPINB13 WILD-TYPE
  I                   3                  85
  II                  2                  31
  III                 4                  35
  IV                  0                   9
D118V10, binary
[1] "tbl2"
                     cls
clus                  [,1] [,2]
  SERPINB13 MUTATED      1    8
  SERPINB13 WILD-TYPE   15  148
     clus
vv    SERPINB13 MUTATED SERPINB13 WILD-TYPE
  NO                  1                  15
  YES                 8                 148
D118V11, continuous
D118V12, continuous
D118V13, multiclass
                                             clus
vv                                            SERPINB13 MUTATED
  CURRENT REFORMED SMOKER FOR < OR = 15 YEARS                 4
  CURRENT REFORMED SMOKER FOR > 15 YEARS                      2
  CURRENT SMOKER                                              3
  LIFELONG NON-SMOKER                                         0
                                             clus
vv                                            SERPINB13 WILD-TYPE
  CURRENT REFORMED SMOKER FOR < OR = 15 YEARS                  58
  CURRENT REFORMED SMOKER FOR > 15 YEARS                       44
  CURRENT SMOKER                                               25
  LIFELONG NON-SMOKER                                          24
D118V14, continuous

Clustering(119) Variable = SLITRK4 MUTATION ANALYSIS
D119V1, survival
                   sevent
clus2                0  1
  SLITRK4 MUTATED    7  7
  SLITRK4 WILD-TYPE 92 43
  SLITRK4 MUTATED SLITRK4 WILD-TYPE 
               14               135 
  SLITRK4 MUTATED SLITRK4 WILD-TYPE 
                7                43 
$`SLITRK4 MUTATED`
TCGA-05-4382 TCGA-05-4398 TCGA-38-4625 TCGA-38-4626 TCGA-44-6777 TCGA-50-5045 
       19.92        47.05        47.61        85.32        32.45        71.47 
TCGA-50-5933 TCGA-50-5935 TCGA-50-5941 TCGA-50-6590 TCGA-50-6594 TCGA-50-6595 
       77.88        21.47         9.37        42.31        12.16         6.21 
TCGA-67-3771 TCGA-73-4676 
        1.97         4.01 

$`SLITRK4 WILD-TYPE`
TCGA-05-4249 TCGA-05-4250 TCGA-05-4384 TCGA-05-4390 TCGA-05-4396 TCGA-05-4397 
       38.07         3.98        14.01        37.02         9.96        24.03 
TCGA-05-4402 TCGA-05-4405 TCGA-05-4415 TCGA-05-4417 TCGA-05-4418 TCGA-05-4420 
        8.02        20.05         2.96        14.93         8.98        29.95 
TCGA-05-4424 TCGA-05-4426 TCGA-05-4427 TCGA-05-4430 TCGA-05-4432 TCGA-05-4433 
       30.02        26.01        26.01        25.02        25.02        24.00 
TCGA-05-4434 TCGA-05-5420 TCGA-05-5423 TCGA-05-5425 TCGA-05-5429 TCGA-05-5715 
       15.02         1.02         4.96         2.96         0.99         2.04 
TCGA-35-3615 TCGA-35-4122 TCGA-35-4123 TCGA-35-5375 TCGA-38-4627 TCGA-38-4628 
        0.46         7.36         5.95         8.68        37.71        49.02 
TCGA-38-4629 TCGA-38-4630 TCGA-38-4631 TCGA-38-4632 TCGA-38-6178 TCGA-44-2655 
       28.37        35.28        11.64        44.61         5.19        18.87 
TCGA-44-2656 TCGA-44-2657 TCGA-44-2659 TCGA-44-2661 TCGA-44-2662 TCGA-44-2665 
       19.10        13.15        17.39         3.39        15.78        13.15 
TCGA-44-2666 TCGA-44-2668 TCGA-44-3396 TCGA-44-3398 TCGA-44-3918 TCGA-44-3919 
        3.19         8.09        10.22         8.32         6.44         6.21 
TCGA-44-4112 TCGA-44-5643 TCGA-44-5645 TCGA-44-6144 TCGA-44-6145 TCGA-44-6146 
        4.60         3.48         6.84         0.30         3.35         9.93 
TCGA-44-6147 TCGA-44-6148 TCGA-44-6774 TCGA-44-6775 TCGA-44-6776 TCGA-44-6778 
        7.76         3.12         5.42         2.70        63.72        36.49 
TCGA-44-6779 TCGA-49-4486 TCGA-49-4487 TCGA-49-4488 TCGA-49-4490 TCGA-49-4494 
       16.41        76.21        28.11        28.57        12.66        35.54 
TCGA-49-4501 TCGA-49-4505 TCGA-49-4506 TCGA-49-4507 TCGA-49-4510 TCGA-49-4512 
       46.72        14.07        32.84         8.81        29.46        29.75 
TCGA-49-4514 TCGA-49-6742 TCGA-49-6743 TCGA-49-6744 TCGA-49-6745 TCGA-50-5044 
       43.20        15.02        12.13        12.99         4.93        20.48 
TCGA-50-5049 TCGA-50-5051 TCGA-50-5055 TCGA-50-5066 TCGA-50-5068 TCGA-50-5072 
       48.82        14.96        25.81         9.76        49.28         8.05 
TCGA-50-5930 TCGA-50-5931 TCGA-50-5932 TCGA-50-5936 TCGA-50-5939 TCGA-50-5942 
        9.27         8.78        35.87         8.45        15.12         4.44 
TCGA-50-5944 TCGA-50-5946 TCGA-50-6591 TCGA-50-6592 TCGA-50-6593 TCGA-50-6597 
       12.26        11.47         3.88        25.51        11.05        33.37 
TCGA-55-1592 TCGA-55-1594 TCGA-55-1595 TCGA-55-1596 TCGA-55-5899 TCGA-55-6543 
       23.05        38.73        48.62        45.17         2.86         0.07 
TCGA-55-6642 TCGA-55-6712 TCGA-64-1676 TCGA-64-1677 TCGA-64-1678 TCGA-64-1680 
       32.61         0.79        56.81        20.65        39.09        37.02 
TCGA-64-5774 TCGA-64-5775 TCGA-64-5778 TCGA-64-5779 TCGA-64-5781 TCGA-64-5815 
       83.84         0.10        30.44        16.67        39.52         7.33 
TCGA-67-3770 TCGA-67-3772 TCGA-67-3773 TCGA-67-3774 TCGA-67-6215 TCGA-67-6216 
        0.99         0.59         2.04         0.59         0.89         0.69 
TCGA-67-6217 TCGA-71-6725 TCGA-73-4658 TCGA-73-4659 TCGA-73-4662 TCGA-73-4666 
       13.87         2.01        52.57        23.38        29.95        20.28 
TCGA-73-4668 TCGA-73-4670 TCGA-73-4675 TCGA-73-4677 TCGA-91-6828 TCGA-91-6829 
       15.35         0.46         1.32         1.25         1.22        41.33 
TCGA-91-6831 TCGA-91-6835 TCGA-91-6836 
        1.28         1.15         0.36 

  SLITRK4 MUTATED SLITRK4 WILD-TYPE 
             1.97              0.07 
  SLITRK4 MUTATED SLITRK4 WILD-TYPE 
            85.32             83.84 
  SLITRK4 MUTATED SLITRK4 WILD-TYPE 
            26.96             13.15 
[1] "2.0 - 85.3 (27.0)" "0.1 - 83.8 (13.2)"
       TCGA-05-4249        TCGA-05-4250        TCGA-05-4382        TCGA-05-4384 
"SLITRK4 WILD-TYPE" "SLITRK4 WILD-TYPE"   "SLITRK4 MUTATED" "SLITRK4 WILD-TYPE" 
       TCGA-05-4390        TCGA-05-4396        TCGA-05-4397        TCGA-05-4398 
"SLITRK4 WILD-TYPE" "SLITRK4 WILD-TYPE" "SLITRK4 WILD-TYPE"   "SLITRK4 MUTATED" 
       TCGA-05-4402        TCGA-05-4405        TCGA-05-4415        TCGA-05-4417 
"SLITRK4 WILD-TYPE" "SLITRK4 WILD-TYPE" "SLITRK4 WILD-TYPE" "SLITRK4 WILD-TYPE" 
       TCGA-05-4418        TCGA-05-4420        TCGA-05-4424        TCGA-05-4426 
"SLITRK4 WILD-TYPE" "SLITRK4 WILD-TYPE" "SLITRK4 WILD-TYPE" "SLITRK4 WILD-TYPE" 
       TCGA-05-4427        TCGA-05-4430        TCGA-05-4432        TCGA-05-4433 
"SLITRK4 WILD-TYPE" "SLITRK4 WILD-TYPE" "SLITRK4 WILD-TYPE" "SLITRK4 WILD-TYPE" 
       TCGA-05-4434        TCGA-05-5420        TCGA-05-5423        TCGA-05-5425 
"SLITRK4 WILD-TYPE" "SLITRK4 WILD-TYPE" "SLITRK4 WILD-TYPE" "SLITRK4 WILD-TYPE" 
       TCGA-05-5429        TCGA-05-5715        TCGA-35-3615        TCGA-35-4122 
"SLITRK4 WILD-TYPE" "SLITRK4 WILD-TYPE" "SLITRK4 WILD-TYPE" "SLITRK4 WILD-TYPE" 
       TCGA-35-4123        TCGA-35-5375        TCGA-38-4625        TCGA-38-4626 
"SLITRK4 WILD-TYPE" "SLITRK4 WILD-TYPE"   "SLITRK4 MUTATED"   "SLITRK4 MUTATED" 
       TCGA-38-4627        TCGA-38-4628        TCGA-38-4629        TCGA-38-4630 
"SLITRK4 WILD-TYPE" "SLITRK4 WILD-TYPE" "SLITRK4 WILD-TYPE" "SLITRK4 WILD-TYPE" 
       TCGA-38-4631        TCGA-38-4632        TCGA-38-6178        TCGA-44-2655 
"SLITRK4 WILD-TYPE" "SLITRK4 WILD-TYPE" "SLITRK4 WILD-TYPE" "SLITRK4 WILD-TYPE" 
       TCGA-44-2656        TCGA-44-2657        TCGA-44-2659        TCGA-44-2661 
"SLITRK4 WILD-TYPE" "SLITRK4 WILD-TYPE" "SLITRK4 WILD-TYPE" "SLITRK4 WILD-TYPE" 
       TCGA-44-2662        TCGA-44-2665        TCGA-44-2666        TCGA-44-2668 
"SLITRK4 WILD-TYPE" "SLITRK4 WILD-TYPE" "SLITRK4 WILD-TYPE" "SLITRK4 WILD-TYPE" 
       TCGA-44-3396        TCGA-44-3398        TCGA-44-3918        TCGA-44-3919 
"SLITRK4 WILD-TYPE" "SLITRK4 WILD-TYPE" "SLITRK4 WILD-TYPE" "SLITRK4 WILD-TYPE" 
       TCGA-44-4112        TCGA-44-5643        TCGA-44-5645        TCGA-44-6144 
"SLITRK4 WILD-TYPE" "SLITRK4 WILD-TYPE" "SLITRK4 WILD-TYPE" "SLITRK4 WILD-TYPE" 
       TCGA-44-6145        TCGA-44-6146        TCGA-44-6147        TCGA-44-6148 
"SLITRK4 WILD-TYPE" "SLITRK4 WILD-TYPE" "SLITRK4 WILD-TYPE" "SLITRK4 WILD-TYPE" 
       TCGA-44-6774        TCGA-44-6775        TCGA-44-6776        TCGA-44-6777 
"SLITRK4 WILD-TYPE" "SLITRK4 WILD-TYPE" "SLITRK4 WILD-TYPE"   "SLITRK4 MUTATED" 
       TCGA-44-6778        TCGA-44-6779        TCGA-49-4486        TCGA-49-4487 
"SLITRK4 WILD-TYPE" "SLITRK4 WILD-TYPE" "SLITRK4 WILD-TYPE" "SLITRK4 WILD-TYPE" 
       TCGA-49-4488        TCGA-49-4490        TCGA-49-4494        TCGA-49-4501 
"SLITRK4 WILD-TYPE" "SLITRK4 WILD-TYPE" "SLITRK4 WILD-TYPE" "SLITRK4 WILD-TYPE" 
       TCGA-49-4505        TCGA-49-4506        TCGA-49-4507        TCGA-49-4510 
"SLITRK4 WILD-TYPE" "SLITRK4 WILD-TYPE" "SLITRK4 WILD-TYPE" "SLITRK4 WILD-TYPE" 
       TCGA-49-4512        TCGA-49-4514        TCGA-49-6742        TCGA-49-6743 
"SLITRK4 WILD-TYPE" "SLITRK4 WILD-TYPE" "SLITRK4 WILD-TYPE" "SLITRK4 WILD-TYPE" 
       TCGA-49-6744        TCGA-49-6745        TCGA-50-5044        TCGA-50-5045 
"SLITRK4 WILD-TYPE" "SLITRK4 WILD-TYPE" "SLITRK4 WILD-TYPE"   "SLITRK4 MUTATED" 
       TCGA-50-5049        TCGA-50-5051        TCGA-50-5055        TCGA-50-5066 
"SLITRK4 WILD-TYPE" "SLITRK4 WILD-TYPE" "SLITRK4 WILD-TYPE" "SLITRK4 WILD-TYPE" 
       TCGA-50-5068        TCGA-50-5072        TCGA-50-5930        TCGA-50-5931 
"SLITRK4 WILD-TYPE" "SLITRK4 WILD-TYPE" "SLITRK4 WILD-TYPE" "SLITRK4 WILD-TYPE" 
       TCGA-50-5932        TCGA-50-5933        TCGA-50-5935        TCGA-50-5936 
"SLITRK4 WILD-TYPE"   "SLITRK4 MUTATED"   "SLITRK4 MUTATED" "SLITRK4 WILD-TYPE" 
       TCGA-50-5939        TCGA-50-5941        TCGA-50-5942        TCGA-50-5944 
"SLITRK4 WILD-TYPE"   "SLITRK4 MUTATED" "SLITRK4 WILD-TYPE" "SLITRK4 WILD-TYPE" 
       TCGA-50-5946        TCGA-50-6590        TCGA-50-6591        TCGA-50-6592 
"SLITRK4 WILD-TYPE"   "SLITRK4 MUTATED" "SLITRK4 WILD-TYPE" "SLITRK4 WILD-TYPE" 
       TCGA-50-6593        TCGA-50-6594        TCGA-50-6595        TCGA-50-6597 
"SLITRK4 WILD-TYPE"   "SLITRK4 MUTATED"   "SLITRK4 MUTATED" "SLITRK4 WILD-TYPE" 
       TCGA-55-1592        TCGA-55-1594        TCGA-55-1595        TCGA-55-1596 
"SLITRK4 WILD-TYPE" "SLITRK4 WILD-TYPE" "SLITRK4 WILD-TYPE" "SLITRK4 WILD-TYPE" 
       TCGA-55-5899        TCGA-55-6543        TCGA-55-6642        TCGA-55-6712 
"SLITRK4 WILD-TYPE" "SLITRK4 WILD-TYPE" "SLITRK4 WILD-TYPE" "SLITRK4 WILD-TYPE" 
       TCGA-64-1676        TCGA-64-1677        TCGA-64-1678        TCGA-64-1680 
"SLITRK4 WILD-TYPE" "SLITRK4 WILD-TYPE" "SLITRK4 WILD-TYPE" "SLITRK4 WILD-TYPE" 
       TCGA-64-5774        TCGA-64-5775        TCGA-64-5778        TCGA-64-5779 
"SLITRK4 WILD-TYPE" "SLITRK4 WILD-TYPE" "SLITRK4 WILD-TYPE" "SLITRK4 WILD-TYPE" 
       TCGA-64-5781        TCGA-64-5815        TCGA-67-3770        TCGA-67-3771 
"SLITRK4 WILD-TYPE" "SLITRK4 WILD-TYPE" "SLITRK4 WILD-TYPE"   "SLITRK4 MUTATED" 
       TCGA-67-3772        TCGA-67-3773        TCGA-67-3774        TCGA-67-6215 
"SLITRK4 WILD-TYPE" "SLITRK4 WILD-TYPE" "SLITRK4 WILD-TYPE" "SLITRK4 WILD-TYPE" 
       TCGA-67-6216        TCGA-67-6217        TCGA-71-6725        TCGA-73-4658 
"SLITRK4 WILD-TYPE" "SLITRK4 WILD-TYPE" "SLITRK4 WILD-TYPE" "SLITRK4 WILD-TYPE" 
       TCGA-73-4659        TCGA-73-4662        TCGA-73-4666        TCGA-73-4668 
"SLITRK4 WILD-TYPE" "SLITRK4 WILD-TYPE" "SLITRK4 WILD-TYPE" "SLITRK4 WILD-TYPE" 
       TCGA-73-4670        TCGA-73-4675        TCGA-73-4676        TCGA-73-4677 
"SLITRK4 WILD-TYPE" "SLITRK4 WILD-TYPE"   "SLITRK4 MUTATED" "SLITRK4 WILD-TYPE" 
       TCGA-91-6828        TCGA-91-6829        TCGA-91-6831        TCGA-91-6835 
"SLITRK4 WILD-TYPE" "SLITRK4 WILD-TYPE" "SLITRK4 WILD-TYPE" "SLITRK4 WILD-TYPE" 
       TCGA-91-6836 
"SLITRK4 WILD-TYPE" 
       TCGA-05-4249        TCGA-05-4250        TCGA-05-4382        TCGA-05-4384 
"SLITRK4 WILD-TYPE" "SLITRK4 WILD-TYPE"   "SLITRK4 MUTATED" "SLITRK4 WILD-TYPE" 
       TCGA-05-4390        TCGA-05-4396        TCGA-05-4397        TCGA-05-4398 
"SLITRK4 WILD-TYPE" "SLITRK4 WILD-TYPE" "SLITRK4 WILD-TYPE"   "SLITRK4 MUTATED" 
       TCGA-05-4402        TCGA-05-4405        TCGA-05-4415        TCGA-05-4417 
"SLITRK4 WILD-TYPE" "SLITRK4 WILD-TYPE" "SLITRK4 WILD-TYPE" "SLITRK4 WILD-TYPE" 
       TCGA-05-4418        TCGA-05-4420        TCGA-05-4424        TCGA-05-4426 
"SLITRK4 WILD-TYPE" "SLITRK4 WILD-TYPE" "SLITRK4 WILD-TYPE" "SLITRK4 WILD-TYPE" 
       TCGA-05-4427        TCGA-05-4430        TCGA-05-4432        TCGA-05-4433 
"SLITRK4 WILD-TYPE" "SLITRK4 WILD-TYPE" "SLITRK4 WILD-TYPE" "SLITRK4 WILD-TYPE" 
       TCGA-05-4434        TCGA-05-5420        TCGA-05-5423        TCGA-05-5425 
"SLITRK4 WILD-TYPE" "SLITRK4 WILD-TYPE" "SLITRK4 WILD-TYPE" "SLITRK4 WILD-TYPE" 
       TCGA-05-5429        TCGA-05-5715        TCGA-35-3615        TCGA-35-4122 
"SLITRK4 WILD-TYPE" "SLITRK4 WILD-TYPE" "SLITRK4 WILD-TYPE" "SLITRK4 WILD-TYPE" 
       TCGA-35-4123        TCGA-35-5375        TCGA-38-4625        TCGA-38-4626 
"SLITRK4 WILD-TYPE" "SLITRK4 WILD-TYPE"   "SLITRK4 MUTATED"   "SLITRK4 MUTATED" 
       TCGA-38-4627        TCGA-38-4628        TCGA-38-4629        TCGA-38-4630 
"SLITRK4 WILD-TYPE" "SLITRK4 WILD-TYPE" "SLITRK4 WILD-TYPE" "SLITRK4 WILD-TYPE" 
       TCGA-38-4631        TCGA-38-4632        TCGA-38-6178        TCGA-44-2655 
"SLITRK4 WILD-TYPE" "SLITRK4 WILD-TYPE" "SLITRK4 WILD-TYPE" "SLITRK4 WILD-TYPE" 
       TCGA-44-2656        TCGA-44-2657        TCGA-44-2659        TCGA-44-2661 
"SLITRK4 WILD-TYPE" "SLITRK4 WILD-TYPE" "SLITRK4 WILD-TYPE" "SLITRK4 WILD-TYPE" 
       TCGA-44-2662        TCGA-44-2665        TCGA-44-2666        TCGA-44-2668 
"SLITRK4 WILD-TYPE" "SLITRK4 WILD-TYPE" "SLITRK4 WILD-TYPE" "SLITRK4 WILD-TYPE" 
       TCGA-44-3396        TCGA-44-3398        TCGA-44-3918        TCGA-44-3919 
"SLITRK4 WILD-TYPE" "SLITRK4 WILD-TYPE" "SLITRK4 WILD-TYPE" "SLITRK4 WILD-TYPE" 
       TCGA-44-4112        TCGA-44-5643        TCGA-44-5645        TCGA-44-6144 
"SLITRK4 WILD-TYPE" "SLITRK4 WILD-TYPE" "SLITRK4 WILD-TYPE" "SLITRK4 WILD-TYPE" 
       TCGA-44-6145        TCGA-44-6146        TCGA-44-6147        TCGA-44-6148 
"SLITRK4 WILD-TYPE" "SLITRK4 WILD-TYPE" "SLITRK4 WILD-TYPE" "SLITRK4 WILD-TYPE" 
       TCGA-44-6774        TCGA-44-6775        TCGA-44-6776        TCGA-44-6777 
"SLITRK4 WILD-TYPE" "SLITRK4 WILD-TYPE" "SLITRK4 WILD-TYPE"   "SLITRK4 MUTATED" 
       TCGA-44-6778        TCGA-44-6779        TCGA-49-4486        TCGA-49-4487 
"SLITRK4 WILD-TYPE" "SLITRK4 WILD-TYPE" "SLITRK4 WILD-TYPE" "SLITRK4 WILD-TYPE" 
       TCGA-49-4488        TCGA-49-4490        TCGA-49-4494        TCGA-49-4501 
"SLITRK4 WILD-TYPE" "SLITRK4 WILD-TYPE" "SLITRK4 WILD-TYPE" "SLITRK4 WILD-TYPE" 
       TCGA-49-4505        TCGA-49-4506        TCGA-49-4507        TCGA-49-4510 
"SLITRK4 WILD-TYPE" "SLITRK4 WILD-TYPE" "SLITRK4 WILD-TYPE" "SLITRK4 WILD-TYPE" 
       TCGA-49-4512        TCGA-49-4514        TCGA-49-6742        TCGA-49-6743 
"SLITRK4 WILD-TYPE" "SLITRK4 WILD-TYPE" "SLITRK4 WILD-TYPE" "SLITRK4 WILD-TYPE" 
       TCGA-49-6744        TCGA-49-6745        TCGA-50-5044        TCGA-50-5045 
"SLITRK4 WILD-TYPE" "SLITRK4 WILD-TYPE" "SLITRK4 WILD-TYPE"   "SLITRK4 MUTATED" 
       TCGA-50-5049        TCGA-50-5051        TCGA-50-5055        TCGA-50-5066 
"SLITRK4 WILD-TYPE" "SLITRK4 WILD-TYPE" "SLITRK4 WILD-TYPE" "SLITRK4 WILD-TYPE" 
       TCGA-50-5068        TCGA-50-5072        TCGA-50-5930        TCGA-50-5931 
"SLITRK4 WILD-TYPE" "SLITRK4 WILD-TYPE" "SLITRK4 WILD-TYPE" "SLITRK4 WILD-TYPE" 
       TCGA-50-5932        TCGA-50-5933        TCGA-50-5935        TCGA-50-5936 
"SLITRK4 WILD-TYPE"   "SLITRK4 MUTATED"   "SLITRK4 MUTATED" "SLITRK4 WILD-TYPE" 
       TCGA-50-5939        TCGA-50-5941        TCGA-50-5942        TCGA-50-5944 
"SLITRK4 WILD-TYPE"   "SLITRK4 MUTATED" "SLITRK4 WILD-TYPE" "SLITRK4 WILD-TYPE" 
       TCGA-50-5946        TCGA-50-6590        TCGA-50-6591        TCGA-50-6592 
"SLITRK4 WILD-TYPE"   "SLITRK4 MUTATED" "SLITRK4 WILD-TYPE" "SLITRK4 WILD-TYPE" 
       TCGA-50-6593        TCGA-50-6594        TCGA-50-6595        TCGA-50-6597 
"SLITRK4 WILD-TYPE"   "SLITRK4 MUTATED"   "SLITRK4 MUTATED" "SLITRK4 WILD-TYPE" 
       TCGA-55-1592        TCGA-55-1594        TCGA-55-1595        TCGA-55-1596 
"SLITRK4 WILD-TYPE" "SLITRK4 WILD-TYPE" "SLITRK4 WILD-TYPE" "SLITRK4 WILD-TYPE" 
       TCGA-55-5899        TCGA-55-6543        TCGA-55-6642        TCGA-55-6712 
"SLITRK4 WILD-TYPE" "SLITRK4 WILD-TYPE" "SLITRK4 WILD-TYPE" "SLITRK4 WILD-TYPE" 
       TCGA-64-1676        TCGA-64-1677        TCGA-64-1678        TCGA-64-1680 
"SLITRK4 WILD-TYPE" "SLITRK4 WILD-TYPE" "SLITRK4 WILD-TYPE" "SLITRK4 WILD-TYPE" 
       TCGA-64-5774        TCGA-64-5775        TCGA-64-5778        TCGA-64-5779 
"SLITRK4 WILD-TYPE" "SLITRK4 WILD-TYPE" "SLITRK4 WILD-TYPE" "SLITRK4 WILD-TYPE" 
       TCGA-64-5781        TCGA-64-5815        TCGA-67-3770        TCGA-67-3771 
"SLITRK4 WILD-TYPE" "SLITRK4 WILD-TYPE" "SLITRK4 WILD-TYPE"   "SLITRK4 MUTATED" 
       TCGA-67-3772        TCGA-67-3773        TCGA-67-3774        TCGA-67-6215 
"SLITRK4 WILD-TYPE" "SLITRK4 WILD-TYPE" "SLITRK4 WILD-TYPE" "SLITRK4 WILD-TYPE" 
       TCGA-67-6216        TCGA-67-6217        TCGA-71-6725        TCGA-73-4658 
"SLITRK4 WILD-TYPE" "SLITRK4 WILD-TYPE" "SLITRK4 WILD-TYPE" "SLITRK4 WILD-TYPE" 
       TCGA-73-4659        TCGA-73-4662        TCGA-73-4666        TCGA-73-4668 
"SLITRK4 WILD-TYPE" "SLITRK4 WILD-TYPE" "SLITRK4 WILD-TYPE" "SLITRK4 WILD-TYPE" 
       TCGA-73-4670        TCGA-73-4675        TCGA-73-4676        TCGA-73-4677 
"SLITRK4 WILD-TYPE" "SLITRK4 WILD-TYPE"   "SLITRK4 MUTATED" "SLITRK4 WILD-TYPE" 
       TCGA-91-6828        TCGA-91-6829        TCGA-91-6831        TCGA-91-6835 
"SLITRK4 WILD-TYPE" "SLITRK4 WILD-TYPE" "SLITRK4 WILD-TYPE" "SLITRK4 WILD-TYPE" 
       TCGA-91-6836 
"SLITRK4 WILD-TYPE" 
       TCGA-05-4249        TCGA-05-4250        TCGA-05-4382        TCGA-05-4384 
"SLITRK4 WILD-TYPE" "SLITRK4 WILD-TYPE"   "SLITRK4 MUTATED" "SLITRK4 WILD-TYPE" 
       TCGA-05-4390        TCGA-05-4396        TCGA-05-4397        TCGA-05-4398 
"SLITRK4 WILD-TYPE" "SLITRK4 WILD-TYPE" "SLITRK4 WILD-TYPE"   "SLITRK4 MUTATED" 
       TCGA-05-4402        TCGA-05-4405        TCGA-05-4415        TCGA-05-4417 
"SLITRK4 WILD-TYPE" "SLITRK4 WILD-TYPE" "SLITRK4 WILD-TYPE" "SLITRK4 WILD-TYPE" 
       TCGA-05-4418        TCGA-05-4420        TCGA-05-4424        TCGA-05-4426 
"SLITRK4 WILD-TYPE" "SLITRK4 WILD-TYPE" "SLITRK4 WILD-TYPE" "SLITRK4 WILD-TYPE" 
       TCGA-05-4427        TCGA-05-4430        TCGA-05-4432        TCGA-05-4433 
"SLITRK4 WILD-TYPE" "SLITRK4 WILD-TYPE" "SLITRK4 WILD-TYPE" "SLITRK4 WILD-TYPE" 
       TCGA-05-4434        TCGA-05-5420        TCGA-05-5423        TCGA-05-5425 
"SLITRK4 WILD-TYPE" "SLITRK4 WILD-TYPE" "SLITRK4 WILD-TYPE" "SLITRK4 WILD-TYPE" 
       TCGA-05-5429        TCGA-05-5715        TCGA-35-3615        TCGA-35-4122 
"SLITRK4 WILD-TYPE" "SLITRK4 WILD-TYPE" "SLITRK4 WILD-TYPE" "SLITRK4 WILD-TYPE" 
       TCGA-35-4123        TCGA-35-5375        TCGA-38-4625        TCGA-38-4626 
"SLITRK4 WILD-TYPE" "SLITRK4 WILD-TYPE"   "SLITRK4 MUTATED"   "SLITRK4 MUTATED" 
       TCGA-38-4627        TCGA-38-4628        TCGA-38-4629        TCGA-38-4630 
"SLITRK4 WILD-TYPE" "SLITRK4 WILD-TYPE" "SLITRK4 WILD-TYPE" "SLITRK4 WILD-TYPE" 
       TCGA-38-4631        TCGA-38-4632        TCGA-38-6178        TCGA-44-2655 
"SLITRK4 WILD-TYPE" "SLITRK4 WILD-TYPE" "SLITRK4 WILD-TYPE" "SLITRK4 WILD-TYPE" 
       TCGA-44-2656        TCGA-44-2657        TCGA-44-2659        TCGA-44-2661 
"SLITRK4 WILD-TYPE" "SLITRK4 WILD-TYPE" "SLITRK4 WILD-TYPE" "SLITRK4 WILD-TYPE" 
       TCGA-44-2662        TCGA-44-2665        TCGA-44-2666        TCGA-44-2668 
"SLITRK4 WILD-TYPE" "SLITRK4 WILD-TYPE" "SLITRK4 WILD-TYPE" "SLITRK4 WILD-TYPE" 
       TCGA-44-3396        TCGA-44-3398        TCGA-44-3918        TCGA-44-3919 
"SLITRK4 WILD-TYPE" "SLITRK4 WILD-TYPE" "SLITRK4 WILD-TYPE" "SLITRK4 WILD-TYPE" 
       TCGA-44-4112        TCGA-44-5643        TCGA-44-5645        TCGA-44-6144 
"SLITRK4 WILD-TYPE" "SLITRK4 WILD-TYPE" "SLITRK4 WILD-TYPE" "SLITRK4 WILD-TYPE" 
       TCGA-44-6145        TCGA-44-6146        TCGA-44-6147        TCGA-44-6148 
"SLITRK4 WILD-TYPE" "SLITRK4 WILD-TYPE" "SLITRK4 WILD-TYPE" "SLITRK4 WILD-TYPE" 
       TCGA-44-6774        TCGA-44-6775        TCGA-44-6776        TCGA-44-6777 
"SLITRK4 WILD-TYPE" "SLITRK4 WILD-TYPE" "SLITRK4 WILD-TYPE"   "SLITRK4 MUTATED" 
       TCGA-44-6778        TCGA-44-6779        TCGA-49-4486        TCGA-49-4487 
"SLITRK4 WILD-TYPE" "SLITRK4 WILD-TYPE" "SLITRK4 WILD-TYPE" "SLITRK4 WILD-TYPE" 
       TCGA-49-4488        TCGA-49-4490        TCGA-49-4494        TCGA-49-4501 
"SLITRK4 WILD-TYPE" "SLITRK4 WILD-TYPE" "SLITRK4 WILD-TYPE" "SLITRK4 WILD-TYPE" 
       TCGA-49-4505        TCGA-49-4506        TCGA-49-4507        TCGA-49-4510 
"SLITRK4 WILD-TYPE" "SLITRK4 WILD-TYPE" "SLITRK4 WILD-TYPE" "SLITRK4 WILD-TYPE" 
       TCGA-49-4512        TCGA-49-4514        TCGA-49-6742        TCGA-49-6743 
"SLITRK4 WILD-TYPE" "SLITRK4 WILD-TYPE" "SLITRK4 WILD-TYPE" "SLITRK4 WILD-TYPE" 
       TCGA-49-6744        TCGA-49-6745        TCGA-50-5044        TCGA-50-5045 
"SLITRK4 WILD-TYPE" "SLITRK4 WILD-TYPE" "SLITRK4 WILD-TYPE"   "SLITRK4 MUTATED" 
       TCGA-50-5049        TCGA-50-5051        TCGA-50-5055        TCGA-50-5066 
"SLITRK4 WILD-TYPE" "SLITRK4 WILD-TYPE" "SLITRK4 WILD-TYPE" "SLITRK4 WILD-TYPE" 
       TCGA-50-5068        TCGA-50-5072        TCGA-50-5930        TCGA-50-5931 
"SLITRK4 WILD-TYPE" "SLITRK4 WILD-TYPE" "SLITRK4 WILD-TYPE" "SLITRK4 WILD-TYPE" 
       TCGA-50-5932        TCGA-50-5933        TCGA-50-5935        TCGA-50-5936 
"SLITRK4 WILD-TYPE"   "SLITRK4 MUTATED"   "SLITRK4 MUTATED" "SLITRK4 WILD-TYPE" 
       TCGA-50-5939        TCGA-50-5941        TCGA-50-5942        TCGA-50-5944 
"SLITRK4 WILD-TYPE"   "SLITRK4 MUTATED" "SLITRK4 WILD-TYPE" "SLITRK4 WILD-TYPE" 
       TCGA-50-5946        TCGA-50-6590        TCGA-50-6591        TCGA-50-6592 
"SLITRK4 WILD-TYPE"   "SLITRK4 MUTATED" "SLITRK4 WILD-TYPE" "SLITRK4 WILD-TYPE" 
       TCGA-50-6593        TCGA-50-6594        TCGA-50-6595        TCGA-50-6597 
"SLITRK4 WILD-TYPE"   "SLITRK4 MUTATED"   "SLITRK4 MUTATED" "SLITRK4 WILD-TYPE" 
       TCGA-55-1592        TCGA-55-1594        TCGA-55-1595        TCGA-55-1596 
"SLITRK4 WILD-TYPE" "SLITRK4 WILD-TYPE" "SLITRK4 WILD-TYPE" "SLITRK4 WILD-TYPE" 
       TCGA-55-5899        TCGA-55-6543        TCGA-55-6642        TCGA-55-6712 
"SLITRK4 WILD-TYPE" "SLITRK4 WILD-TYPE" "SLITRK4 WILD-TYPE" "SLITRK4 WILD-TYPE" 
       TCGA-64-1676        TCGA-64-1677        TCGA-64-1678        TCGA-64-1680 
"SLITRK4 WILD-TYPE" "SLITRK4 WILD-TYPE" "SLITRK4 WILD-TYPE" "SLITRK4 WILD-TYPE" 
       TCGA-64-5774        TCGA-64-5775        TCGA-64-5778        TCGA-64-5779 
"SLITRK4 WILD-TYPE" "SLITRK4 WILD-TYPE" "SLITRK4 WILD-TYPE" "SLITRK4 WILD-TYPE" 
       TCGA-64-5781        TCGA-64-5815        TCGA-67-3770        TCGA-67-3771 
"SLITRK4 WILD-TYPE" "SLITRK4 WILD-TYPE" "SLITRK4 WILD-TYPE"   "SLITRK4 MUTATED" 
       TCGA-67-3772        TCGA-67-3773        TCGA-67-3774        TCGA-67-6215 
"SLITRK4 WILD-TYPE" "SLITRK4 WILD-TYPE" "SLITRK4 WILD-TYPE" "SLITRK4 WILD-TYPE" 
       TCGA-67-6216        TCGA-67-6217        TCGA-71-6725        TCGA-73-4658 
"SLITRK4 WILD-TYPE" "SLITRK4 WILD-TYPE" "SLITRK4 WILD-TYPE" "SLITRK4 WILD-TYPE" 
       TCGA-73-4659        TCGA-73-4662        TCGA-73-4666        TCGA-73-4668 
"SLITRK4 WILD-TYPE" "SLITRK4 WILD-TYPE" "SLITRK4 WILD-TYPE" "SLITRK4 WILD-TYPE" 
       TCGA-73-4670        TCGA-73-4675        TCGA-73-4676        TCGA-73-4677 
"SLITRK4 WILD-TYPE" "SLITRK4 WILD-TYPE"   "SLITRK4 MUTATED" "SLITRK4 WILD-TYPE" 
       TCGA-91-6828        TCGA-91-6829        TCGA-91-6831        TCGA-91-6835 
"SLITRK4 WILD-TYPE" "SLITRK4 WILD-TYPE" "SLITRK4 WILD-TYPE" "SLITRK4 WILD-TYPE" 
       TCGA-91-6836 
"SLITRK4 WILD-TYPE" 
[1] "hr=" "1.5"
D119V2, continuous
D119V3, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  SLITRK4 MUTATED     11    4
  SLITRK4 WILD-TYPE   82   75
        clus
vv       SLITRK4 MUTATED SLITRK4 WILD-TYPE
  FEMALE              11                82
  MALE                 4                75
D119V4, continuous
[1] "Remove cluster labels:" "SLITRK4 MUTATED"       
clus
  SLITRK4 MUTATED SLITRK4 WILD-TYPE 
                1                11 
       TCGA-35-4122        TCGA-35-4123        TCGA-35-5375        TCGA-64-1677 
"SLITRK4 WILD-TYPE" "SLITRK4 WILD-TYPE" "SLITRK4 WILD-TYPE" "SLITRK4 WILD-TYPE" 
       TCGA-64-5778        TCGA-71-6725        TCGA-73-4659        TCGA-73-4662 
"SLITRK4 WILD-TYPE" "SLITRK4 WILD-TYPE" "SLITRK4 WILD-TYPE" "SLITRK4 WILD-TYPE" 
       TCGA-73-4666        TCGA-73-4668        TCGA-75-5122 
"SLITRK4 WILD-TYPE" "SLITRK4 WILD-TYPE" "SLITRK4 WILD-TYPE" 
D119V5, multiclass
D119V6, multiclass
    clus
vv   SLITRK4 MUTATED SLITRK4 WILD-TYPE
  T1               2                39
  T2              10                98
  T3               1                13
  T4               2                 6
D119V7, multiclass
       clus
vv      SLITRK4 MUTATED SLITRK4 WILD-TYPE
  N0                  7                88
  N1                  2                35
  N2+N3               5                30
D119V8, multiclass
    clus
vv   SLITRK4 MUTATED SLITRK4 WILD-TYPE
  M0              14               123
  M1               0                 9
  MX               1                21
D119V9, multiclass
     clus
vv    SLITRK4 MUTATED SLITRK4 WILD-TYPE
  I                 8                80
  II                2                31
  III               5                34
  IV                0                 9
D119V10, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  SLITRK4 MUTATED      5   10
  SLITRK4 WILD-TYPE   11  146
     clus
vv    SLITRK4 MUTATED SLITRK4 WILD-TYPE
  NO                5                11
  YES              10               146
D119V11, continuous
D119V12, continuous
D119V13, multiclass
                                             clus
vv                                            SLITRK4 MUTATED SLITRK4 WILD-TYPE
  CURRENT REFORMED SMOKER FOR < OR = 15 YEARS               7                55
  CURRENT REFORMED SMOKER FOR > 15 YEARS                    1                45
  CURRENT SMOKER                                            4                24
  LIFELONG NON-SMOKER                                       0                24
D119V14, continuous

Clustering(120) Variable = CRIPAK MUTATION ANALYSIS
D120V1, survival
                  sevent
clus2               0  1
  CRIPAK MUTATED    4  2
  CRIPAK WILD-TYPE 95 48
  CRIPAK MUTATED CRIPAK WILD-TYPE 
               6              143 
  CRIPAK MUTATED CRIPAK WILD-TYPE 
               2               48 
$`CRIPAK MUTATED`
TCGA-05-4396 TCGA-05-5425 TCGA-05-5715 TCGA-44-2668 TCGA-44-6148 TCGA-50-6594 
        9.96         2.96         2.04         8.09         3.12        12.16 

$`CRIPAK WILD-TYPE`
TCGA-05-4249 TCGA-05-4250 TCGA-05-4382 TCGA-05-4384 TCGA-05-4390 TCGA-05-4397 
       38.07         3.98        19.92        14.01        37.02        24.03 
TCGA-05-4398 TCGA-05-4402 TCGA-05-4405 TCGA-05-4415 TCGA-05-4417 TCGA-05-4418 
       47.05         8.02        20.05         2.96        14.93         8.98 
TCGA-05-4420 TCGA-05-4424 TCGA-05-4426 TCGA-05-4427 TCGA-05-4430 TCGA-05-4432 
       29.95        30.02        26.01        26.01        25.02        25.02 
TCGA-05-4433 TCGA-05-4434 TCGA-05-5420 TCGA-05-5423 TCGA-05-5429 TCGA-35-3615 
       24.00        15.02         1.02         4.96         0.99         0.46 
TCGA-35-4122 TCGA-35-4123 TCGA-35-5375 TCGA-38-4625 TCGA-38-4626 TCGA-38-4627 
        7.36         5.95         8.68        47.61        85.32        37.71 
TCGA-38-4628 TCGA-38-4629 TCGA-38-4630 TCGA-38-4631 TCGA-38-4632 TCGA-38-6178 
       49.02        28.37        35.28        11.64        44.61         5.19 
TCGA-44-2655 TCGA-44-2656 TCGA-44-2657 TCGA-44-2659 TCGA-44-2661 TCGA-44-2662 
       18.87        19.10        13.15        17.39         3.39        15.78 
TCGA-44-2665 TCGA-44-2666 TCGA-44-3396 TCGA-44-3398 TCGA-44-3918 TCGA-44-3919 
       13.15         3.19        10.22         8.32         6.44         6.21 
TCGA-44-4112 TCGA-44-5643 TCGA-44-5645 TCGA-44-6144 TCGA-44-6145 TCGA-44-6146 
        4.60         3.48         6.84         0.30         3.35         9.93 
TCGA-44-6147 TCGA-44-6774 TCGA-44-6775 TCGA-44-6776 TCGA-44-6777 TCGA-44-6778 
        7.76         5.42         2.70        63.72        32.45        36.49 
TCGA-44-6779 TCGA-49-4486 TCGA-49-4487 TCGA-49-4488 TCGA-49-4490 TCGA-49-4494 
       16.41        76.21        28.11        28.57        12.66        35.54 
TCGA-49-4501 TCGA-49-4505 TCGA-49-4506 TCGA-49-4507 TCGA-49-4510 TCGA-49-4512 
       46.72        14.07        32.84         8.81        29.46        29.75 
TCGA-49-4514 TCGA-49-6742 TCGA-49-6743 TCGA-49-6744 TCGA-49-6745 TCGA-50-5044 
       43.20        15.02        12.13        12.99         4.93        20.48 
TCGA-50-5045 TCGA-50-5049 TCGA-50-5051 TCGA-50-5055 TCGA-50-5066 TCGA-50-5068 
       71.47        48.82        14.96        25.81         9.76        49.28 
TCGA-50-5072 TCGA-50-5930 TCGA-50-5931 TCGA-50-5932 TCGA-50-5933 TCGA-50-5935 
        8.05         9.27         8.78        35.87        77.88        21.47 
TCGA-50-5936 TCGA-50-5939 TCGA-50-5941 TCGA-50-5942 TCGA-50-5944 TCGA-50-5946 
        8.45        15.12         9.37         4.44        12.26        11.47 
TCGA-50-6590 TCGA-50-6591 TCGA-50-6592 TCGA-50-6593 TCGA-50-6595 TCGA-50-6597 
       42.31         3.88        25.51        11.05         6.21        33.37 
TCGA-55-1592 TCGA-55-1594 TCGA-55-1595 TCGA-55-1596 TCGA-55-5899 TCGA-55-6543 
       23.05        38.73        48.62        45.17         2.86         0.07 
TCGA-55-6642 TCGA-55-6712 TCGA-64-1676 TCGA-64-1677 TCGA-64-1678 TCGA-64-1680 
       32.61         0.79        56.81        20.65        39.09        37.02 
TCGA-64-5774 TCGA-64-5775 TCGA-64-5778 TCGA-64-5779 TCGA-64-5781 TCGA-64-5815 
       83.84         0.10        30.44        16.67        39.52         7.33 
TCGA-67-3770 TCGA-67-3771 TCGA-67-3772 TCGA-67-3773 TCGA-67-3774 TCGA-67-6215 
        0.99         1.97         0.59         2.04         0.59         0.89 
TCGA-67-6216 TCGA-67-6217 TCGA-71-6725 TCGA-73-4658 TCGA-73-4659 TCGA-73-4662 
        0.69        13.87         2.01        52.57        23.38        29.95 
TCGA-73-4666 TCGA-73-4668 TCGA-73-4670 TCGA-73-4675 TCGA-73-4676 TCGA-73-4677 
       20.28        15.35         0.46         1.32         4.01         1.25 
TCGA-91-6828 TCGA-91-6829 TCGA-91-6831 TCGA-91-6835 TCGA-91-6836 
        1.22        41.33         1.28         1.15         0.36 

  CRIPAK MUTATED CRIPAK WILD-TYPE 
            2.04             0.07 
  CRIPAK MUTATED CRIPAK WILD-TYPE 
           12.16            85.32 
  CRIPAK MUTATED CRIPAK WILD-TYPE 
           5.605           14.930 
[1] "2.0 - 12.2 (5.6)"  "0.1 - 85.3 (14.9)"
      TCGA-05-4249       TCGA-05-4250       TCGA-05-4382       TCGA-05-4384 
"CRIPAK WILD-TYPE" "CRIPAK WILD-TYPE" "CRIPAK WILD-TYPE" "CRIPAK WILD-TYPE" 
      TCGA-05-4390       TCGA-05-4396       TCGA-05-4397       TCGA-05-4398 
"CRIPAK WILD-TYPE"   "CRIPAK MUTATED" "CRIPAK WILD-TYPE" "CRIPAK WILD-TYPE" 
      TCGA-05-4402       TCGA-05-4405       TCGA-05-4415       TCGA-05-4417 
"CRIPAK WILD-TYPE" "CRIPAK WILD-TYPE" "CRIPAK WILD-TYPE" "CRIPAK WILD-TYPE" 
      TCGA-05-4418       TCGA-05-4420       TCGA-05-4424       TCGA-05-4426 
"CRIPAK WILD-TYPE" "CRIPAK WILD-TYPE" "CRIPAK WILD-TYPE" "CRIPAK WILD-TYPE" 
      TCGA-05-4427       TCGA-05-4430       TCGA-05-4432       TCGA-05-4433 
"CRIPAK WILD-TYPE" "CRIPAK WILD-TYPE" "CRIPAK WILD-TYPE" "CRIPAK WILD-TYPE" 
      TCGA-05-4434       TCGA-05-5420       TCGA-05-5423       TCGA-05-5425 
"CRIPAK WILD-TYPE" "CRIPAK WILD-TYPE" "CRIPAK WILD-TYPE"   "CRIPAK MUTATED" 
      TCGA-05-5429       TCGA-05-5715       TCGA-35-3615       TCGA-35-4122 
"CRIPAK WILD-TYPE"   "CRIPAK MUTATED" "CRIPAK WILD-TYPE" "CRIPAK WILD-TYPE" 
      TCGA-35-4123       TCGA-35-5375       TCGA-38-4625       TCGA-38-4626 
"CRIPAK WILD-TYPE" "CRIPAK WILD-TYPE" "CRIPAK WILD-TYPE" "CRIPAK WILD-TYPE" 
      TCGA-38-4627       TCGA-38-4628       TCGA-38-4629       TCGA-38-4630 
"CRIPAK WILD-TYPE" "CRIPAK WILD-TYPE" "CRIPAK WILD-TYPE" "CRIPAK WILD-TYPE" 
      TCGA-38-4631       TCGA-38-4632       TCGA-38-6178       TCGA-44-2655 
"CRIPAK WILD-TYPE" "CRIPAK WILD-TYPE" "CRIPAK WILD-TYPE" "CRIPAK WILD-TYPE" 
      TCGA-44-2656       TCGA-44-2657       TCGA-44-2659       TCGA-44-2661 
"CRIPAK WILD-TYPE" "CRIPAK WILD-TYPE" "CRIPAK WILD-TYPE" "CRIPAK WILD-TYPE" 
      TCGA-44-2662       TCGA-44-2665       TCGA-44-2666       TCGA-44-2668 
"CRIPAK WILD-TYPE" "CRIPAK WILD-TYPE" "CRIPAK WILD-TYPE"   "CRIPAK MUTATED" 
      TCGA-44-3396       TCGA-44-3398       TCGA-44-3918       TCGA-44-3919 
"CRIPAK WILD-TYPE" "CRIPAK WILD-TYPE" "CRIPAK WILD-TYPE" "CRIPAK WILD-TYPE" 
      TCGA-44-4112       TCGA-44-5643       TCGA-44-5645       TCGA-44-6144 
"CRIPAK WILD-TYPE" "CRIPAK WILD-TYPE" "CRIPAK WILD-TYPE" "CRIPAK WILD-TYPE" 
      TCGA-44-6145       TCGA-44-6146       TCGA-44-6147       TCGA-44-6148 
"CRIPAK WILD-TYPE" "CRIPAK WILD-TYPE" "CRIPAK WILD-TYPE"   "CRIPAK MUTATED" 
      TCGA-44-6774       TCGA-44-6775       TCGA-44-6776       TCGA-44-6777 
"CRIPAK WILD-TYPE" "CRIPAK WILD-TYPE" "CRIPAK WILD-TYPE" "CRIPAK WILD-TYPE" 
      TCGA-44-6778       TCGA-44-6779       TCGA-49-4486       TCGA-49-4487 
"CRIPAK WILD-TYPE" "CRIPAK WILD-TYPE" "CRIPAK WILD-TYPE" "CRIPAK WILD-TYPE" 
      TCGA-49-4488       TCGA-49-4490       TCGA-49-4494       TCGA-49-4501 
"CRIPAK WILD-TYPE" "CRIPAK WILD-TYPE" "CRIPAK WILD-TYPE" "CRIPAK WILD-TYPE" 
      TCGA-49-4505       TCGA-49-4506       TCGA-49-4507       TCGA-49-4510 
"CRIPAK WILD-TYPE" "CRIPAK WILD-TYPE" "CRIPAK WILD-TYPE" "CRIPAK WILD-TYPE" 
      TCGA-49-4512       TCGA-49-4514       TCGA-49-6742       TCGA-49-6743 
"CRIPAK WILD-TYPE" "CRIPAK WILD-TYPE" "CRIPAK WILD-TYPE" "CRIPAK WILD-TYPE" 
      TCGA-49-6744       TCGA-49-6745       TCGA-50-5044       TCGA-50-5045 
"CRIPAK WILD-TYPE" "CRIPAK WILD-TYPE" "CRIPAK WILD-TYPE" "CRIPAK WILD-TYPE" 
      TCGA-50-5049       TCGA-50-5051       TCGA-50-5055       TCGA-50-5066 
"CRIPAK WILD-TYPE" "CRIPAK WILD-TYPE" "CRIPAK WILD-TYPE" "CRIPAK WILD-TYPE" 
      TCGA-50-5068       TCGA-50-5072       TCGA-50-5930       TCGA-50-5931 
"CRIPAK WILD-TYPE" "CRIPAK WILD-TYPE" "CRIPAK WILD-TYPE" "CRIPAK WILD-TYPE" 
      TCGA-50-5932       TCGA-50-5933       TCGA-50-5935       TCGA-50-5936 
"CRIPAK WILD-TYPE" "CRIPAK WILD-TYPE" "CRIPAK WILD-TYPE" "CRIPAK WILD-TYPE" 
      TCGA-50-5939       TCGA-50-5941       TCGA-50-5942       TCGA-50-5944 
"CRIPAK WILD-TYPE" "CRIPAK WILD-TYPE" "CRIPAK WILD-TYPE" "CRIPAK WILD-TYPE" 
      TCGA-50-5946       TCGA-50-6590       TCGA-50-6591       TCGA-50-6592 
"CRIPAK WILD-TYPE" "CRIPAK WILD-TYPE" "CRIPAK WILD-TYPE" "CRIPAK WILD-TYPE" 
      TCGA-50-6593       TCGA-50-6594       TCGA-50-6595       TCGA-50-6597 
"CRIPAK WILD-TYPE"   "CRIPAK MUTATED" "CRIPAK WILD-TYPE" "CRIPAK WILD-TYPE" 
      TCGA-55-1592       TCGA-55-1594       TCGA-55-1595       TCGA-55-1596 
"CRIPAK WILD-TYPE" "CRIPAK WILD-TYPE" "CRIPAK WILD-TYPE" "CRIPAK WILD-TYPE" 
      TCGA-55-5899       TCGA-55-6543       TCGA-55-6642       TCGA-55-6712 
"CRIPAK WILD-TYPE" "CRIPAK WILD-TYPE" "CRIPAK WILD-TYPE" "CRIPAK WILD-TYPE" 
      TCGA-64-1676       TCGA-64-1677       TCGA-64-1678       TCGA-64-1680 
"CRIPAK WILD-TYPE" "CRIPAK WILD-TYPE" "CRIPAK WILD-TYPE" "CRIPAK WILD-TYPE" 
      TCGA-64-5774       TCGA-64-5775       TCGA-64-5778       TCGA-64-5779 
"CRIPAK WILD-TYPE" "CRIPAK WILD-TYPE" "CRIPAK WILD-TYPE" "CRIPAK WILD-TYPE" 
      TCGA-64-5781       TCGA-64-5815       TCGA-67-3770       TCGA-67-3771 
"CRIPAK WILD-TYPE" "CRIPAK WILD-TYPE" "CRIPAK WILD-TYPE" "CRIPAK WILD-TYPE" 
      TCGA-67-3772       TCGA-67-3773       TCGA-67-3774       TCGA-67-6215 
"CRIPAK WILD-TYPE" "CRIPAK WILD-TYPE" "CRIPAK WILD-TYPE" "CRIPAK WILD-TYPE" 
      TCGA-67-6216       TCGA-67-6217       TCGA-71-6725       TCGA-73-4658 
"CRIPAK WILD-TYPE" "CRIPAK WILD-TYPE" "CRIPAK WILD-TYPE" "CRIPAK WILD-TYPE" 
      TCGA-73-4659       TCGA-73-4662       TCGA-73-4666       TCGA-73-4668 
"CRIPAK WILD-TYPE" "CRIPAK WILD-TYPE" "CRIPAK WILD-TYPE" "CRIPAK WILD-TYPE" 
      TCGA-73-4670       TCGA-73-4675       TCGA-73-4676       TCGA-73-4677 
"CRIPAK WILD-TYPE" "CRIPAK WILD-TYPE" "CRIPAK WILD-TYPE" "CRIPAK WILD-TYPE" 
      TCGA-91-6828       TCGA-91-6829       TCGA-91-6831       TCGA-91-6835 
"CRIPAK WILD-TYPE" "CRIPAK WILD-TYPE" "CRIPAK WILD-TYPE" "CRIPAK WILD-TYPE" 
      TCGA-91-6836 
"CRIPAK WILD-TYPE" 
      TCGA-05-4249       TCGA-05-4250       TCGA-05-4382       TCGA-05-4384 
"CRIPAK WILD-TYPE" "CRIPAK WILD-TYPE" "CRIPAK WILD-TYPE" "CRIPAK WILD-TYPE" 
      TCGA-05-4390       TCGA-05-4396       TCGA-05-4397       TCGA-05-4398 
"CRIPAK WILD-TYPE"   "CRIPAK MUTATED" "CRIPAK WILD-TYPE" "CRIPAK WILD-TYPE" 
      TCGA-05-4402       TCGA-05-4405       TCGA-05-4415       TCGA-05-4417 
"CRIPAK WILD-TYPE" "CRIPAK WILD-TYPE" "CRIPAK WILD-TYPE" "CRIPAK WILD-TYPE" 
      TCGA-05-4418       TCGA-05-4420       TCGA-05-4424       TCGA-05-4426 
"CRIPAK WILD-TYPE" "CRIPAK WILD-TYPE" "CRIPAK WILD-TYPE" "CRIPAK WILD-TYPE" 
      TCGA-05-4427       TCGA-05-4430       TCGA-05-4432       TCGA-05-4433 
"CRIPAK WILD-TYPE" "CRIPAK WILD-TYPE" "CRIPAK WILD-TYPE" "CRIPAK WILD-TYPE" 
      TCGA-05-4434       TCGA-05-5420       TCGA-05-5423       TCGA-05-5425 
"CRIPAK WILD-TYPE" "CRIPAK WILD-TYPE" "CRIPAK WILD-TYPE"   "CRIPAK MUTATED" 
      TCGA-05-5429       TCGA-05-5715       TCGA-35-3615       TCGA-35-4122 
"CRIPAK WILD-TYPE"   "CRIPAK MUTATED" "CRIPAK WILD-TYPE" "CRIPAK WILD-TYPE" 
      TCGA-35-4123       TCGA-35-5375       TCGA-38-4625       TCGA-38-4626 
"CRIPAK WILD-TYPE" "CRIPAK WILD-TYPE" "CRIPAK WILD-TYPE" "CRIPAK WILD-TYPE" 
      TCGA-38-4627       TCGA-38-4628       TCGA-38-4629       TCGA-38-4630 
"CRIPAK WILD-TYPE" "CRIPAK WILD-TYPE" "CRIPAK WILD-TYPE" "CRIPAK WILD-TYPE" 
      TCGA-38-4631       TCGA-38-4632       TCGA-38-6178       TCGA-44-2655 
"CRIPAK WILD-TYPE" "CRIPAK WILD-TYPE" "CRIPAK WILD-TYPE" "CRIPAK WILD-TYPE" 
      TCGA-44-2656       TCGA-44-2657       TCGA-44-2659       TCGA-44-2661 
"CRIPAK WILD-TYPE" "CRIPAK WILD-TYPE" "CRIPAK WILD-TYPE" "CRIPAK WILD-TYPE" 
      TCGA-44-2662       TCGA-44-2665       TCGA-44-2666       TCGA-44-2668 
"CRIPAK WILD-TYPE" "CRIPAK WILD-TYPE" "CRIPAK WILD-TYPE"   "CRIPAK MUTATED" 
      TCGA-44-3396       TCGA-44-3398       TCGA-44-3918       TCGA-44-3919 
"CRIPAK WILD-TYPE" "CRIPAK WILD-TYPE" "CRIPAK WILD-TYPE" "CRIPAK WILD-TYPE" 
      TCGA-44-4112       TCGA-44-5643       TCGA-44-5645       TCGA-44-6144 
"CRIPAK WILD-TYPE" "CRIPAK WILD-TYPE" "CRIPAK WILD-TYPE" "CRIPAK WILD-TYPE" 
      TCGA-44-6145       TCGA-44-6146       TCGA-44-6147       TCGA-44-6148 
"CRIPAK WILD-TYPE" "CRIPAK WILD-TYPE" "CRIPAK WILD-TYPE"   "CRIPAK MUTATED" 
      TCGA-44-6774       TCGA-44-6775       TCGA-44-6776       TCGA-44-6777 
"CRIPAK WILD-TYPE" "CRIPAK WILD-TYPE" "CRIPAK WILD-TYPE" "CRIPAK WILD-TYPE" 
      TCGA-44-6778       TCGA-44-6779       TCGA-49-4486       TCGA-49-4487 
"CRIPAK WILD-TYPE" "CRIPAK WILD-TYPE" "CRIPAK WILD-TYPE" "CRIPAK WILD-TYPE" 
      TCGA-49-4488       TCGA-49-4490       TCGA-49-4494       TCGA-49-4501 
"CRIPAK WILD-TYPE" "CRIPAK WILD-TYPE" "CRIPAK WILD-TYPE" "CRIPAK WILD-TYPE" 
      TCGA-49-4505       TCGA-49-4506       TCGA-49-4507       TCGA-49-4510 
"CRIPAK WILD-TYPE" "CRIPAK WILD-TYPE" "CRIPAK WILD-TYPE" "CRIPAK WILD-TYPE" 
      TCGA-49-4512       TCGA-49-4514       TCGA-49-6742       TCGA-49-6743 
"CRIPAK WILD-TYPE" "CRIPAK WILD-TYPE" "CRIPAK WILD-TYPE" "CRIPAK WILD-TYPE" 
      TCGA-49-6744       TCGA-49-6745       TCGA-50-5044       TCGA-50-5045 
"CRIPAK WILD-TYPE" "CRIPAK WILD-TYPE" "CRIPAK WILD-TYPE" "CRIPAK WILD-TYPE" 
      TCGA-50-5049       TCGA-50-5051       TCGA-50-5055       TCGA-50-5066 
"CRIPAK WILD-TYPE" "CRIPAK WILD-TYPE" "CRIPAK WILD-TYPE" "CRIPAK WILD-TYPE" 
      TCGA-50-5068       TCGA-50-5072       TCGA-50-5930       TCGA-50-5931 
"CRIPAK WILD-TYPE" "CRIPAK WILD-TYPE" "CRIPAK WILD-TYPE" "CRIPAK WILD-TYPE" 
      TCGA-50-5932       TCGA-50-5933       TCGA-50-5935       TCGA-50-5936 
"CRIPAK WILD-TYPE" "CRIPAK WILD-TYPE" "CRIPAK WILD-TYPE" "CRIPAK WILD-TYPE" 
      TCGA-50-5939       TCGA-50-5941       TCGA-50-5942       TCGA-50-5944 
"CRIPAK WILD-TYPE" "CRIPAK WILD-TYPE" "CRIPAK WILD-TYPE" "CRIPAK WILD-TYPE" 
      TCGA-50-5946       TCGA-50-6590       TCGA-50-6591       TCGA-50-6592 
"CRIPAK WILD-TYPE" "CRIPAK WILD-TYPE" "CRIPAK WILD-TYPE" "CRIPAK WILD-TYPE" 
      TCGA-50-6593       TCGA-50-6594       TCGA-50-6595       TCGA-50-6597 
"CRIPAK WILD-TYPE"   "CRIPAK MUTATED" "CRIPAK WILD-TYPE" "CRIPAK WILD-TYPE" 
      TCGA-55-1592       TCGA-55-1594       TCGA-55-1595       TCGA-55-1596 
"CRIPAK WILD-TYPE" "CRIPAK WILD-TYPE" "CRIPAK WILD-TYPE" "CRIPAK WILD-TYPE" 
      TCGA-55-5899       TCGA-55-6543       TCGA-55-6642       TCGA-55-6712 
"CRIPAK WILD-TYPE" "CRIPAK WILD-TYPE" "CRIPAK WILD-TYPE" "CRIPAK WILD-TYPE" 
      TCGA-64-1676       TCGA-64-1677       TCGA-64-1678       TCGA-64-1680 
"CRIPAK WILD-TYPE" "CRIPAK WILD-TYPE" "CRIPAK WILD-TYPE" "CRIPAK WILD-TYPE" 
      TCGA-64-5774       TCGA-64-5775       TCGA-64-5778       TCGA-64-5779 
"CRIPAK WILD-TYPE" "CRIPAK WILD-TYPE" "CRIPAK WILD-TYPE" "CRIPAK WILD-TYPE" 
      TCGA-64-5781       TCGA-64-5815       TCGA-67-3770       TCGA-67-3771 
"CRIPAK WILD-TYPE" "CRIPAK WILD-TYPE" "CRIPAK WILD-TYPE" "CRIPAK WILD-TYPE" 
      TCGA-67-3772       TCGA-67-3773       TCGA-67-3774       TCGA-67-6215 
"CRIPAK WILD-TYPE" "CRIPAK WILD-TYPE" "CRIPAK WILD-TYPE" "CRIPAK WILD-TYPE" 
      TCGA-67-6216       TCGA-67-6217       TCGA-71-6725       TCGA-73-4658 
"CRIPAK WILD-TYPE" "CRIPAK WILD-TYPE" "CRIPAK WILD-TYPE" "CRIPAK WILD-TYPE" 
      TCGA-73-4659       TCGA-73-4662       TCGA-73-4666       TCGA-73-4668 
"CRIPAK WILD-TYPE" "CRIPAK WILD-TYPE" "CRIPAK WILD-TYPE" "CRIPAK WILD-TYPE" 
      TCGA-73-4670       TCGA-73-4675       TCGA-73-4676       TCGA-73-4677 
"CRIPAK WILD-TYPE" "CRIPAK WILD-TYPE" "CRIPAK WILD-TYPE" "CRIPAK WILD-TYPE" 
      TCGA-91-6828       TCGA-91-6829       TCGA-91-6831       TCGA-91-6835 
"CRIPAK WILD-TYPE" "CRIPAK WILD-TYPE" "CRIPAK WILD-TYPE" "CRIPAK WILD-TYPE" 
      TCGA-91-6836 
"CRIPAK WILD-TYPE" 
      TCGA-05-4249       TCGA-05-4250       TCGA-05-4382       TCGA-05-4384 
"CRIPAK WILD-TYPE" "CRIPAK WILD-TYPE" "CRIPAK WILD-TYPE" "CRIPAK WILD-TYPE" 
      TCGA-05-4390       TCGA-05-4396       TCGA-05-4397       TCGA-05-4398 
"CRIPAK WILD-TYPE"   "CRIPAK MUTATED" "CRIPAK WILD-TYPE" "CRIPAK WILD-TYPE" 
      TCGA-05-4402       TCGA-05-4405       TCGA-05-4415       TCGA-05-4417 
"CRIPAK WILD-TYPE" "CRIPAK WILD-TYPE" "CRIPAK WILD-TYPE" "CRIPAK WILD-TYPE" 
      TCGA-05-4418       TCGA-05-4420       TCGA-05-4424       TCGA-05-4426 
"CRIPAK WILD-TYPE" "CRIPAK WILD-TYPE" "CRIPAK WILD-TYPE" "CRIPAK WILD-TYPE" 
      TCGA-05-4427       TCGA-05-4430       TCGA-05-4432       TCGA-05-4433 
"CRIPAK WILD-TYPE" "CRIPAK WILD-TYPE" "CRIPAK WILD-TYPE" "CRIPAK WILD-TYPE" 
      TCGA-05-4434       TCGA-05-5420       TCGA-05-5423       TCGA-05-5425 
"CRIPAK WILD-TYPE" "CRIPAK WILD-TYPE" "CRIPAK WILD-TYPE"   "CRIPAK MUTATED" 
      TCGA-05-5429       TCGA-05-5715       TCGA-35-3615       TCGA-35-4122 
"CRIPAK WILD-TYPE"   "CRIPAK MUTATED" "CRIPAK WILD-TYPE" "CRIPAK WILD-TYPE" 
      TCGA-35-4123       TCGA-35-5375       TCGA-38-4625       TCGA-38-4626 
"CRIPAK WILD-TYPE" "CRIPAK WILD-TYPE" "CRIPAK WILD-TYPE" "CRIPAK WILD-TYPE" 
      TCGA-38-4627       TCGA-38-4628       TCGA-38-4629       TCGA-38-4630 
"CRIPAK WILD-TYPE" "CRIPAK WILD-TYPE" "CRIPAK WILD-TYPE" "CRIPAK WILD-TYPE" 
      TCGA-38-4631       TCGA-38-4632       TCGA-38-6178       TCGA-44-2655 
"CRIPAK WILD-TYPE" "CRIPAK WILD-TYPE" "CRIPAK WILD-TYPE" "CRIPAK WILD-TYPE" 
      TCGA-44-2656       TCGA-44-2657       TCGA-44-2659       TCGA-44-2661 
"CRIPAK WILD-TYPE" "CRIPAK WILD-TYPE" "CRIPAK WILD-TYPE" "CRIPAK WILD-TYPE" 
      TCGA-44-2662       TCGA-44-2665       TCGA-44-2666       TCGA-44-2668 
"CRIPAK WILD-TYPE" "CRIPAK WILD-TYPE" "CRIPAK WILD-TYPE"   "CRIPAK MUTATED" 
      TCGA-44-3396       TCGA-44-3398       TCGA-44-3918       TCGA-44-3919 
"CRIPAK WILD-TYPE" "CRIPAK WILD-TYPE" "CRIPAK WILD-TYPE" "CRIPAK WILD-TYPE" 
      TCGA-44-4112       TCGA-44-5643       TCGA-44-5645       TCGA-44-6144 
"CRIPAK WILD-TYPE" "CRIPAK WILD-TYPE" "CRIPAK WILD-TYPE" "CRIPAK WILD-TYPE" 
      TCGA-44-6145       TCGA-44-6146       TCGA-44-6147       TCGA-44-6148 
"CRIPAK WILD-TYPE" "CRIPAK WILD-TYPE" "CRIPAK WILD-TYPE"   "CRIPAK MUTATED" 
      TCGA-44-6774       TCGA-44-6775       TCGA-44-6776       TCGA-44-6777 
"CRIPAK WILD-TYPE" "CRIPAK WILD-TYPE" "CRIPAK WILD-TYPE" "CRIPAK WILD-TYPE" 
      TCGA-44-6778       TCGA-44-6779       TCGA-49-4486       TCGA-49-4487 
"CRIPAK WILD-TYPE" "CRIPAK WILD-TYPE" "CRIPAK WILD-TYPE" "CRIPAK WILD-TYPE" 
      TCGA-49-4488       TCGA-49-4490       TCGA-49-4494       TCGA-49-4501 
"CRIPAK WILD-TYPE" "CRIPAK WILD-TYPE" "CRIPAK WILD-TYPE" "CRIPAK WILD-TYPE" 
      TCGA-49-4505       TCGA-49-4506       TCGA-49-4507       TCGA-49-4510 
"CRIPAK WILD-TYPE" "CRIPAK WILD-TYPE" "CRIPAK WILD-TYPE" "CRIPAK WILD-TYPE" 
      TCGA-49-4512       TCGA-49-4514       TCGA-49-6742       TCGA-49-6743 
"CRIPAK WILD-TYPE" "CRIPAK WILD-TYPE" "CRIPAK WILD-TYPE" "CRIPAK WILD-TYPE" 
      TCGA-49-6744       TCGA-49-6745       TCGA-50-5044       TCGA-50-5045 
"CRIPAK WILD-TYPE" "CRIPAK WILD-TYPE" "CRIPAK WILD-TYPE" "CRIPAK WILD-TYPE" 
      TCGA-50-5049       TCGA-50-5051       TCGA-50-5055       TCGA-50-5066 
"CRIPAK WILD-TYPE" "CRIPAK WILD-TYPE" "CRIPAK WILD-TYPE" "CRIPAK WILD-TYPE" 
      TCGA-50-5068       TCGA-50-5072       TCGA-50-5930       TCGA-50-5931 
"CRIPAK WILD-TYPE" "CRIPAK WILD-TYPE" "CRIPAK WILD-TYPE" "CRIPAK WILD-TYPE" 
      TCGA-50-5932       TCGA-50-5933       TCGA-50-5935       TCGA-50-5936 
"CRIPAK WILD-TYPE" "CRIPAK WILD-TYPE" "CRIPAK WILD-TYPE" "CRIPAK WILD-TYPE" 
      TCGA-50-5939       TCGA-50-5941       TCGA-50-5942       TCGA-50-5944 
"CRIPAK WILD-TYPE" "CRIPAK WILD-TYPE" "CRIPAK WILD-TYPE" "CRIPAK WILD-TYPE" 
      TCGA-50-5946       TCGA-50-6590       TCGA-50-6591       TCGA-50-6592 
"CRIPAK WILD-TYPE" "CRIPAK WILD-TYPE" "CRIPAK WILD-TYPE" "CRIPAK WILD-TYPE" 
      TCGA-50-6593       TCGA-50-6594       TCGA-50-6595       TCGA-50-6597 
"CRIPAK WILD-TYPE"   "CRIPAK MUTATED" "CRIPAK WILD-TYPE" "CRIPAK WILD-TYPE" 
      TCGA-55-1592       TCGA-55-1594       TCGA-55-1595       TCGA-55-1596 
"CRIPAK WILD-TYPE" "CRIPAK WILD-TYPE" "CRIPAK WILD-TYPE" "CRIPAK WILD-TYPE" 
      TCGA-55-5899       TCGA-55-6543       TCGA-55-6642       TCGA-55-6712 
"CRIPAK WILD-TYPE" "CRIPAK WILD-TYPE" "CRIPAK WILD-TYPE" "CRIPAK WILD-TYPE" 
      TCGA-64-1676       TCGA-64-1677       TCGA-64-1678       TCGA-64-1680 
"CRIPAK WILD-TYPE" "CRIPAK WILD-TYPE" "CRIPAK WILD-TYPE" "CRIPAK WILD-TYPE" 
      TCGA-64-5774       TCGA-64-5775       TCGA-64-5778       TCGA-64-5779 
"CRIPAK WILD-TYPE" "CRIPAK WILD-TYPE" "CRIPAK WILD-TYPE" "CRIPAK WILD-TYPE" 
      TCGA-64-5781       TCGA-64-5815       TCGA-67-3770       TCGA-67-3771 
"CRIPAK WILD-TYPE" "CRIPAK WILD-TYPE" "CRIPAK WILD-TYPE" "CRIPAK WILD-TYPE" 
      TCGA-67-3772       TCGA-67-3773       TCGA-67-3774       TCGA-67-6215 
"CRIPAK WILD-TYPE" "CRIPAK WILD-TYPE" "CRIPAK WILD-TYPE" "CRIPAK WILD-TYPE" 
      TCGA-67-6216       TCGA-67-6217       TCGA-71-6725       TCGA-73-4658 
"CRIPAK WILD-TYPE" "CRIPAK WILD-TYPE" "CRIPAK WILD-TYPE" "CRIPAK WILD-TYPE" 
      TCGA-73-4659       TCGA-73-4662       TCGA-73-4666       TCGA-73-4668 
"CRIPAK WILD-TYPE" "CRIPAK WILD-TYPE" "CRIPAK WILD-TYPE" "CRIPAK WILD-TYPE" 
      TCGA-73-4670       TCGA-73-4675       TCGA-73-4676       TCGA-73-4677 
"CRIPAK WILD-TYPE" "CRIPAK WILD-TYPE" "CRIPAK WILD-TYPE" "CRIPAK WILD-TYPE" 
      TCGA-91-6828       TCGA-91-6829       TCGA-91-6831       TCGA-91-6835 
"CRIPAK WILD-TYPE" "CRIPAK WILD-TYPE" "CRIPAK WILD-TYPE" "CRIPAK WILD-TYPE" 
      TCGA-91-6836 
"CRIPAK WILD-TYPE" 
[1] "hr=" "5.2"
D120V2, continuous
D120V3, binary
[1] "tbl2"
                  cls
clus               [,1] [,2]
  CRIPAK MUTATED      3    7
  CRIPAK WILD-TYPE   90   72
        clus
vv       CRIPAK MUTATED CRIPAK WILD-TYPE
  FEMALE              3               90
  MALE                7               72
D120V4, continuous
D120V5, multiclass
D120V6, multiclass
    clus
vv   CRIPAK MUTATED CRIPAK WILD-TYPE
  T1              1               40
  T2              7              101
  T3              1               13
  T4              1                7
D120V7, multiclass
       clus
vv      CRIPAK MUTATED CRIPAK WILD-TYPE
  N0                 7               88
  N1                 2               35
  N2+N3              1               34
D120V8, multiclass
    clus
vv   CRIPAK MUTATED CRIPAK WILD-TYPE
  M0             10              127
  M1              0                9
  MX              0               22
D120V9, multiclass
     clus
vv    CRIPAK MUTATED CRIPAK WILD-TYPE
  I                7               81
  II               1               32
  III              2               37
  IV               0                9
D120V10, binary
[1] "tbl2"
                  cls
clus               [,1] [,2]
  CRIPAK MUTATED      0   10
  CRIPAK WILD-TYPE   16  146
     clus
vv    CRIPAK MUTATED CRIPAK WILD-TYPE
  NO               0               16
  YES             10              146
D120V11, continuous
D120V12, continuous
D120V13, multiclass
                                             clus
vv                                            CRIPAK MUTATED CRIPAK WILD-TYPE
  CURRENT REFORMED SMOKER FOR < OR = 15 YEARS              3               59
  CURRENT REFORMED SMOKER FOR > 15 YEARS                   5               41
  CURRENT SMOKER                                           0               28
  LIFELONG NON-SMOKER                                      2               22
D120V14, continuous

Clustering(121) Variable = OR10T2 MUTATION ANALYSIS
D121V1, survival
                  sevent
clus2               0  1
  OR10T2 MUTATED    5  2
  OR10T2 WILD-TYPE 94 48
  OR10T2 MUTATED OR10T2 WILD-TYPE 
               7              142 
  OR10T2 MUTATED OR10T2 WILD-TYPE 
               2               48 
$`OR10T2 MUTATED`
TCGA-05-4424 TCGA-05-4432 TCGA-44-2659 TCGA-44-6145 TCGA-49-4507 TCGA-55-1592 
       30.02        25.02        17.39         3.35         8.81        23.05 
TCGA-64-5781 
       39.52 

$`OR10T2 WILD-TYPE`
TCGA-05-4249 TCGA-05-4250 TCGA-05-4382 TCGA-05-4384 TCGA-05-4390 TCGA-05-4396 
       38.07         3.98        19.92        14.01        37.02         9.96 
TCGA-05-4397 TCGA-05-4398 TCGA-05-4402 TCGA-05-4405 TCGA-05-4415 TCGA-05-4417 
       24.03        47.05         8.02        20.05         2.96        14.93 
TCGA-05-4418 TCGA-05-4420 TCGA-05-4426 TCGA-05-4427 TCGA-05-4430 TCGA-05-4433 
        8.98        29.95        26.01        26.01        25.02        24.00 
TCGA-05-4434 TCGA-05-5420 TCGA-05-5423 TCGA-05-5425 TCGA-05-5429 TCGA-05-5715 
       15.02         1.02         4.96         2.96         0.99         2.04 
TCGA-35-3615 TCGA-35-4122 TCGA-35-4123 TCGA-35-5375 TCGA-38-4625 TCGA-38-4626 
        0.46         7.36         5.95         8.68        47.61        85.32 
TCGA-38-4627 TCGA-38-4628 TCGA-38-4629 TCGA-38-4630 TCGA-38-4631 TCGA-38-4632 
       37.71        49.02        28.37        35.28        11.64        44.61 
TCGA-38-6178 TCGA-44-2655 TCGA-44-2656 TCGA-44-2657 TCGA-44-2661 TCGA-44-2662 
        5.19        18.87        19.10        13.15         3.39        15.78 
TCGA-44-2665 TCGA-44-2666 TCGA-44-2668 TCGA-44-3396 TCGA-44-3398 TCGA-44-3918 
       13.15         3.19         8.09        10.22         8.32         6.44 
TCGA-44-3919 TCGA-44-4112 TCGA-44-5643 TCGA-44-5645 TCGA-44-6144 TCGA-44-6146 
        6.21         4.60         3.48         6.84         0.30         9.93 
TCGA-44-6147 TCGA-44-6148 TCGA-44-6774 TCGA-44-6775 TCGA-44-6776 TCGA-44-6777 
        7.76         3.12         5.42         2.70        63.72        32.45 
TCGA-44-6778 TCGA-44-6779 TCGA-49-4486 TCGA-49-4487 TCGA-49-4488 TCGA-49-4490 
       36.49        16.41        76.21        28.11        28.57        12.66 
TCGA-49-4494 TCGA-49-4501 TCGA-49-4505 TCGA-49-4506 TCGA-49-4510 TCGA-49-4512 
       35.54        46.72        14.07        32.84        29.46        29.75 
TCGA-49-4514 TCGA-49-6742 TCGA-49-6743 TCGA-49-6744 TCGA-49-6745 TCGA-50-5044 
       43.20        15.02        12.13        12.99         4.93        20.48 
TCGA-50-5045 TCGA-50-5049 TCGA-50-5051 TCGA-50-5055 TCGA-50-5066 TCGA-50-5068 
       71.47        48.82        14.96        25.81         9.76        49.28 
TCGA-50-5072 TCGA-50-5930 TCGA-50-5931 TCGA-50-5932 TCGA-50-5933 TCGA-50-5935 
        8.05         9.27         8.78        35.87        77.88        21.47 
TCGA-50-5936 TCGA-50-5939 TCGA-50-5941 TCGA-50-5942 TCGA-50-5944 TCGA-50-5946 
        8.45        15.12         9.37         4.44        12.26        11.47 
TCGA-50-6590 TCGA-50-6591 TCGA-50-6592 TCGA-50-6593 TCGA-50-6594 TCGA-50-6595 
       42.31         3.88        25.51        11.05        12.16         6.21 
TCGA-50-6597 TCGA-55-1594 TCGA-55-1595 TCGA-55-1596 TCGA-55-5899 TCGA-55-6543 
       33.37        38.73        48.62        45.17         2.86         0.07 
TCGA-55-6642 TCGA-55-6712 TCGA-64-1676 TCGA-64-1677 TCGA-64-1678 TCGA-64-1680 
       32.61         0.79        56.81        20.65        39.09        37.02 
TCGA-64-5774 TCGA-64-5775 TCGA-64-5778 TCGA-64-5779 TCGA-64-5815 TCGA-67-3770 
       83.84         0.10        30.44        16.67         7.33         0.99 
TCGA-67-3771 TCGA-67-3772 TCGA-67-3773 TCGA-67-3774 TCGA-67-6215 TCGA-67-6216 
        1.97         0.59         2.04         0.59         0.89         0.69 
TCGA-67-6217 TCGA-71-6725 TCGA-73-4658 TCGA-73-4659 TCGA-73-4662 TCGA-73-4666 
       13.87         2.01        52.57        23.38        29.95        20.28 
TCGA-73-4668 TCGA-73-4670 TCGA-73-4675 TCGA-73-4676 TCGA-73-4677 TCGA-91-6828 
       15.35         0.46         1.32         4.01         1.25         1.22 
TCGA-91-6829 TCGA-91-6831 TCGA-91-6835 TCGA-91-6836 
       41.33         1.28         1.15         0.36 

  OR10T2 MUTATED OR10T2 WILD-TYPE 
            3.35             0.07 
  OR10T2 MUTATED OR10T2 WILD-TYPE 
           39.52            85.32 
  OR10T2 MUTATED OR10T2 WILD-TYPE 
           23.05            13.15 
[1] "3.4 - 39.5 (23.1)" "0.1 - 85.3 (13.2)"
      TCGA-05-4249       TCGA-05-4250       TCGA-05-4382       TCGA-05-4384 
"OR10T2 WILD-TYPE" "OR10T2 WILD-TYPE" "OR10T2 WILD-TYPE" "OR10T2 WILD-TYPE" 
      TCGA-05-4390       TCGA-05-4396       TCGA-05-4397       TCGA-05-4398 
"OR10T2 WILD-TYPE" "OR10T2 WILD-TYPE" "OR10T2 WILD-TYPE" "OR10T2 WILD-TYPE" 
      TCGA-05-4402       TCGA-05-4405       TCGA-05-4415       TCGA-05-4417 
"OR10T2 WILD-TYPE" "OR10T2 WILD-TYPE" "OR10T2 WILD-TYPE" "OR10T2 WILD-TYPE" 
      TCGA-05-4418       TCGA-05-4420       TCGA-05-4424       TCGA-05-4426 
"OR10T2 WILD-TYPE" "OR10T2 WILD-TYPE"   "OR10T2 MUTATED" "OR10T2 WILD-TYPE" 
      TCGA-05-4427       TCGA-05-4430       TCGA-05-4432       TCGA-05-4433 
"OR10T2 WILD-TYPE" "OR10T2 WILD-TYPE"   "OR10T2 MUTATED" "OR10T2 WILD-TYPE" 
      TCGA-05-4434       TCGA-05-5420       TCGA-05-5423       TCGA-05-5425 
"OR10T2 WILD-TYPE" "OR10T2 WILD-TYPE" "OR10T2 WILD-TYPE" "OR10T2 WILD-TYPE" 
      TCGA-05-5429       TCGA-05-5715       TCGA-35-3615       TCGA-35-4122 
"OR10T2 WILD-TYPE" "OR10T2 WILD-TYPE" "OR10T2 WILD-TYPE" "OR10T2 WILD-TYPE" 
      TCGA-35-4123       TCGA-35-5375       TCGA-38-4625       TCGA-38-4626 
"OR10T2 WILD-TYPE" "OR10T2 WILD-TYPE" "OR10T2 WILD-TYPE" "OR10T2 WILD-TYPE" 
      TCGA-38-4627       TCGA-38-4628       TCGA-38-4629       TCGA-38-4630 
"OR10T2 WILD-TYPE" "OR10T2 WILD-TYPE" "OR10T2 WILD-TYPE" "OR10T2 WILD-TYPE" 
      TCGA-38-4631       TCGA-38-4632       TCGA-38-6178       TCGA-44-2655 
"OR10T2 WILD-TYPE" "OR10T2 WILD-TYPE" "OR10T2 WILD-TYPE" "OR10T2 WILD-TYPE" 
      TCGA-44-2656       TCGA-44-2657       TCGA-44-2659       TCGA-44-2661 
"OR10T2 WILD-TYPE" "OR10T2 WILD-TYPE"   "OR10T2 MUTATED" "OR10T2 WILD-TYPE" 
      TCGA-44-2662       TCGA-44-2665       TCGA-44-2666       TCGA-44-2668 
"OR10T2 WILD-TYPE" "OR10T2 WILD-TYPE" "OR10T2 WILD-TYPE" "OR10T2 WILD-TYPE" 
      TCGA-44-3396       TCGA-44-3398       TCGA-44-3918       TCGA-44-3919 
"OR10T2 WILD-TYPE" "OR10T2 WILD-TYPE" "OR10T2 WILD-TYPE" "OR10T2 WILD-TYPE" 
      TCGA-44-4112       TCGA-44-5643       TCGA-44-5645       TCGA-44-6144 
"OR10T2 WILD-TYPE" "OR10T2 WILD-TYPE" "OR10T2 WILD-TYPE" "OR10T2 WILD-TYPE" 
      TCGA-44-6145       TCGA-44-6146       TCGA-44-6147       TCGA-44-6148 
  "OR10T2 MUTATED" "OR10T2 WILD-TYPE" "OR10T2 WILD-TYPE" "OR10T2 WILD-TYPE" 
      TCGA-44-6774       TCGA-44-6775       TCGA-44-6776       TCGA-44-6777 
"OR10T2 WILD-TYPE" "OR10T2 WILD-TYPE" "OR10T2 WILD-TYPE" "OR10T2 WILD-TYPE" 
      TCGA-44-6778       TCGA-44-6779       TCGA-49-4486       TCGA-49-4487 
"OR10T2 WILD-TYPE" "OR10T2 WILD-TYPE" "OR10T2 WILD-TYPE" "OR10T2 WILD-TYPE" 
      TCGA-49-4488       TCGA-49-4490       TCGA-49-4494       TCGA-49-4501 
"OR10T2 WILD-TYPE" "OR10T2 WILD-TYPE" "OR10T2 WILD-TYPE" "OR10T2 WILD-TYPE" 
      TCGA-49-4505       TCGA-49-4506       TCGA-49-4507       TCGA-49-4510 
"OR10T2 WILD-TYPE" "OR10T2 WILD-TYPE"   "OR10T2 MUTATED" "OR10T2 WILD-TYPE" 
      TCGA-49-4512       TCGA-49-4514       TCGA-49-6742       TCGA-49-6743 
"OR10T2 WILD-TYPE" "OR10T2 WILD-TYPE" "OR10T2 WILD-TYPE" "OR10T2 WILD-TYPE" 
      TCGA-49-6744       TCGA-49-6745       TCGA-50-5044       TCGA-50-5045 
"OR10T2 WILD-TYPE" "OR10T2 WILD-TYPE" "OR10T2 WILD-TYPE" "OR10T2 WILD-TYPE" 
      TCGA-50-5049       TCGA-50-5051       TCGA-50-5055       TCGA-50-5066 
"OR10T2 WILD-TYPE" "OR10T2 WILD-TYPE" "OR10T2 WILD-TYPE" "OR10T2 WILD-TYPE" 
      TCGA-50-5068       TCGA-50-5072       TCGA-50-5930       TCGA-50-5931 
"OR10T2 WILD-TYPE" "OR10T2 WILD-TYPE" "OR10T2 WILD-TYPE" "OR10T2 WILD-TYPE" 
      TCGA-50-5932       TCGA-50-5933       TCGA-50-5935       TCGA-50-5936 
"OR10T2 WILD-TYPE" "OR10T2 WILD-TYPE" "OR10T2 WILD-TYPE" "OR10T2 WILD-TYPE" 
      TCGA-50-5939       TCGA-50-5941       TCGA-50-5942       TCGA-50-5944 
"OR10T2 WILD-TYPE" "OR10T2 WILD-TYPE" "OR10T2 WILD-TYPE" "OR10T2 WILD-TYPE" 
      TCGA-50-5946       TCGA-50-6590       TCGA-50-6591       TCGA-50-6592 
"OR10T2 WILD-TYPE" "OR10T2 WILD-TYPE" "OR10T2 WILD-TYPE" "OR10T2 WILD-TYPE" 
      TCGA-50-6593       TCGA-50-6594       TCGA-50-6595       TCGA-50-6597 
"OR10T2 WILD-TYPE" "OR10T2 WILD-TYPE" "OR10T2 WILD-TYPE" "OR10T2 WILD-TYPE" 
      TCGA-55-1592       TCGA-55-1594       TCGA-55-1595       TCGA-55-1596 
  "OR10T2 MUTATED" "OR10T2 WILD-TYPE" "OR10T2 WILD-TYPE" "OR10T2 WILD-TYPE" 
      TCGA-55-5899       TCGA-55-6543       TCGA-55-6642       TCGA-55-6712 
"OR10T2 WILD-TYPE" "OR10T2 WILD-TYPE" "OR10T2 WILD-TYPE" "OR10T2 WILD-TYPE" 
      TCGA-64-1676       TCGA-64-1677       TCGA-64-1678       TCGA-64-1680 
"OR10T2 WILD-TYPE" "OR10T2 WILD-TYPE" "OR10T2 WILD-TYPE" "OR10T2 WILD-TYPE" 
      TCGA-64-5774       TCGA-64-5775       TCGA-64-5778       TCGA-64-5779 
"OR10T2 WILD-TYPE" "OR10T2 WILD-TYPE" "OR10T2 WILD-TYPE" "OR10T2 WILD-TYPE" 
      TCGA-64-5781       TCGA-64-5815       TCGA-67-3770       TCGA-67-3771 
  "OR10T2 MUTATED" "OR10T2 WILD-TYPE" "OR10T2 WILD-TYPE" "OR10T2 WILD-TYPE" 
      TCGA-67-3772       TCGA-67-3773       TCGA-67-3774       TCGA-67-6215 
"OR10T2 WILD-TYPE" "OR10T2 WILD-TYPE" "OR10T2 WILD-TYPE" "OR10T2 WILD-TYPE" 
      TCGA-67-6216       TCGA-67-6217       TCGA-71-6725       TCGA-73-4658 
"OR10T2 WILD-TYPE" "OR10T2 WILD-TYPE" "OR10T2 WILD-TYPE" "OR10T2 WILD-TYPE" 
      TCGA-73-4659       TCGA-73-4662       TCGA-73-4666       TCGA-73-4668 
"OR10T2 WILD-TYPE" "OR10T2 WILD-TYPE" "OR10T2 WILD-TYPE" "OR10T2 WILD-TYPE" 
      TCGA-73-4670       TCGA-73-4675       TCGA-73-4676       TCGA-73-4677 
"OR10T2 WILD-TYPE" "OR10T2 WILD-TYPE" "OR10T2 WILD-TYPE" "OR10T2 WILD-TYPE" 
      TCGA-91-6828       TCGA-91-6829       TCGA-91-6831       TCGA-91-6835 
"OR10T2 WILD-TYPE" "OR10T2 WILD-TYPE" "OR10T2 WILD-TYPE" "OR10T2 WILD-TYPE" 
      TCGA-91-6836 
"OR10T2 WILD-TYPE" 
      TCGA-05-4249       TCGA-05-4250       TCGA-05-4382       TCGA-05-4384 
"OR10T2 WILD-TYPE" "OR10T2 WILD-TYPE" "OR10T2 WILD-TYPE" "OR10T2 WILD-TYPE" 
      TCGA-05-4390       TCGA-05-4396       TCGA-05-4397       TCGA-05-4398 
"OR10T2 WILD-TYPE" "OR10T2 WILD-TYPE" "OR10T2 WILD-TYPE" "OR10T2 WILD-TYPE" 
      TCGA-05-4402       TCGA-05-4405       TCGA-05-4415       TCGA-05-4417 
"OR10T2 WILD-TYPE" "OR10T2 WILD-TYPE" "OR10T2 WILD-TYPE" "OR10T2 WILD-TYPE" 
      TCGA-05-4418       TCGA-05-4420       TCGA-05-4424       TCGA-05-4426 
"OR10T2 WILD-TYPE" "OR10T2 WILD-TYPE"   "OR10T2 MUTATED" "OR10T2 WILD-TYPE" 
      TCGA-05-4427       TCGA-05-4430       TCGA-05-4432       TCGA-05-4433 
"OR10T2 WILD-TYPE" "OR10T2 WILD-TYPE"   "OR10T2 MUTATED" "OR10T2 WILD-TYPE" 
      TCGA-05-4434       TCGA-05-5420       TCGA-05-5423       TCGA-05-5425 
"OR10T2 WILD-TYPE" "OR10T2 WILD-TYPE" "OR10T2 WILD-TYPE" "OR10T2 WILD-TYPE" 
      TCGA-05-5429       TCGA-05-5715       TCGA-35-3615       TCGA-35-4122 
"OR10T2 WILD-TYPE" "OR10T2 WILD-TYPE" "OR10T2 WILD-TYPE" "OR10T2 WILD-TYPE" 
      TCGA-35-4123       TCGA-35-5375       TCGA-38-4625       TCGA-38-4626 
"OR10T2 WILD-TYPE" "OR10T2 WILD-TYPE" "OR10T2 WILD-TYPE" "OR10T2 WILD-TYPE" 
      TCGA-38-4627       TCGA-38-4628       TCGA-38-4629       TCGA-38-4630 
"OR10T2 WILD-TYPE" "OR10T2 WILD-TYPE" "OR10T2 WILD-TYPE" "OR10T2 WILD-TYPE" 
      TCGA-38-4631       TCGA-38-4632       TCGA-38-6178       TCGA-44-2655 
"OR10T2 WILD-TYPE" "OR10T2 WILD-TYPE" "OR10T2 WILD-TYPE" "OR10T2 WILD-TYPE" 
      TCGA-44-2656       TCGA-44-2657       TCGA-44-2659       TCGA-44-2661 
"OR10T2 WILD-TYPE" "OR10T2 WILD-TYPE"   "OR10T2 MUTATED" "OR10T2 WILD-TYPE" 
      TCGA-44-2662       TCGA-44-2665       TCGA-44-2666       TCGA-44-2668 
"OR10T2 WILD-TYPE" "OR10T2 WILD-TYPE" "OR10T2 WILD-TYPE" "OR10T2 WILD-TYPE" 
      TCGA-44-3396       TCGA-44-3398       TCGA-44-3918       TCGA-44-3919 
"OR10T2 WILD-TYPE" "OR10T2 WILD-TYPE" "OR10T2 WILD-TYPE" "OR10T2 WILD-TYPE" 
      TCGA-44-4112       TCGA-44-5643       TCGA-44-5645       TCGA-44-6144 
"OR10T2 WILD-TYPE" "OR10T2 WILD-TYPE" "OR10T2 WILD-TYPE" "OR10T2 WILD-TYPE" 
      TCGA-44-6145       TCGA-44-6146       TCGA-44-6147       TCGA-44-6148 
  "OR10T2 MUTATED" "OR10T2 WILD-TYPE" "OR10T2 WILD-TYPE" "OR10T2 WILD-TYPE" 
      TCGA-44-6774       TCGA-44-6775       TCGA-44-6776       TCGA-44-6777 
"OR10T2 WILD-TYPE" "OR10T2 WILD-TYPE" "OR10T2 WILD-TYPE" "OR10T2 WILD-TYPE" 
      TCGA-44-6778       TCGA-44-6779       TCGA-49-4486       TCGA-49-4487 
"OR10T2 WILD-TYPE" "OR10T2 WILD-TYPE" "OR10T2 WILD-TYPE" "OR10T2 WILD-TYPE" 
      TCGA-49-4488       TCGA-49-4490       TCGA-49-4494       TCGA-49-4501 
"OR10T2 WILD-TYPE" "OR10T2 WILD-TYPE" "OR10T2 WILD-TYPE" "OR10T2 WILD-TYPE" 
      TCGA-49-4505       TCGA-49-4506       TCGA-49-4507       TCGA-49-4510 
"OR10T2 WILD-TYPE" "OR10T2 WILD-TYPE"   "OR10T2 MUTATED" "OR10T2 WILD-TYPE" 
      TCGA-49-4512       TCGA-49-4514       TCGA-49-6742       TCGA-49-6743 
"OR10T2 WILD-TYPE" "OR10T2 WILD-TYPE" "OR10T2 WILD-TYPE" "OR10T2 WILD-TYPE" 
      TCGA-49-6744       TCGA-49-6745       TCGA-50-5044       TCGA-50-5045 
"OR10T2 WILD-TYPE" "OR10T2 WILD-TYPE" "OR10T2 WILD-TYPE" "OR10T2 WILD-TYPE" 
      TCGA-50-5049       TCGA-50-5051       TCGA-50-5055       TCGA-50-5066 
"OR10T2 WILD-TYPE" "OR10T2 WILD-TYPE" "OR10T2 WILD-TYPE" "OR10T2 WILD-TYPE" 
      TCGA-50-5068       TCGA-50-5072       TCGA-50-5930       TCGA-50-5931 
"OR10T2 WILD-TYPE" "OR10T2 WILD-TYPE" "OR10T2 WILD-TYPE" "OR10T2 WILD-TYPE" 
      TCGA-50-5932       TCGA-50-5933       TCGA-50-5935       TCGA-50-5936 
"OR10T2 WILD-TYPE" "OR10T2 WILD-TYPE" "OR10T2 WILD-TYPE" "OR10T2 WILD-TYPE" 
      TCGA-50-5939       TCGA-50-5941       TCGA-50-5942       TCGA-50-5944 
"OR10T2 WILD-TYPE" "OR10T2 WILD-TYPE" "OR10T2 WILD-TYPE" "OR10T2 WILD-TYPE" 
      TCGA-50-5946       TCGA-50-6590       TCGA-50-6591       TCGA-50-6592 
"OR10T2 WILD-TYPE" "OR10T2 WILD-TYPE" "OR10T2 WILD-TYPE" "OR10T2 WILD-TYPE" 
      TCGA-50-6593       TCGA-50-6594       TCGA-50-6595       TCGA-50-6597 
"OR10T2 WILD-TYPE" "OR10T2 WILD-TYPE" "OR10T2 WILD-TYPE" "OR10T2 WILD-TYPE" 
      TCGA-55-1592       TCGA-55-1594       TCGA-55-1595       TCGA-55-1596 
  "OR10T2 MUTATED" "OR10T2 WILD-TYPE" "OR10T2 WILD-TYPE" "OR10T2 WILD-TYPE" 
      TCGA-55-5899       TCGA-55-6543       TCGA-55-6642       TCGA-55-6712 
"OR10T2 WILD-TYPE" "OR10T2 WILD-TYPE" "OR10T2 WILD-TYPE" "OR10T2 WILD-TYPE" 
      TCGA-64-1676       TCGA-64-1677       TCGA-64-1678       TCGA-64-1680 
"OR10T2 WILD-TYPE" "OR10T2 WILD-TYPE" "OR10T2 WILD-TYPE" "OR10T2 WILD-TYPE" 
      TCGA-64-5774       TCGA-64-5775       TCGA-64-5778       TCGA-64-5779 
"OR10T2 WILD-TYPE" "OR10T2 WILD-TYPE" "OR10T2 WILD-TYPE" "OR10T2 WILD-TYPE" 
      TCGA-64-5781       TCGA-64-5815       TCGA-67-3770       TCGA-67-3771 
  "OR10T2 MUTATED" "OR10T2 WILD-TYPE" "OR10T2 WILD-TYPE" "OR10T2 WILD-TYPE" 
      TCGA-67-3772       TCGA-67-3773       TCGA-67-3774       TCGA-67-6215 
"OR10T2 WILD-TYPE" "OR10T2 WILD-TYPE" "OR10T2 WILD-TYPE" "OR10T2 WILD-TYPE" 
      TCGA-67-6216       TCGA-67-6217       TCGA-71-6725       TCGA-73-4658 
"OR10T2 WILD-TYPE" "OR10T2 WILD-TYPE" "OR10T2 WILD-TYPE" "OR10T2 WILD-TYPE" 
      TCGA-73-4659       TCGA-73-4662       TCGA-73-4666       TCGA-73-4668 
"OR10T2 WILD-TYPE" "OR10T2 WILD-TYPE" "OR10T2 WILD-TYPE" "OR10T2 WILD-TYPE" 
      TCGA-73-4670       TCGA-73-4675       TCGA-73-4676       TCGA-73-4677 
"OR10T2 WILD-TYPE" "OR10T2 WILD-TYPE" "OR10T2 WILD-TYPE" "OR10T2 WILD-TYPE" 
      TCGA-91-6828       TCGA-91-6829       TCGA-91-6831       TCGA-91-6835 
"OR10T2 WILD-TYPE" "OR10T2 WILD-TYPE" "OR10T2 WILD-TYPE" "OR10T2 WILD-TYPE" 
      TCGA-91-6836 
"OR10T2 WILD-TYPE" 
      TCGA-05-4249       TCGA-05-4250       TCGA-05-4382       TCGA-05-4384 
"OR10T2 WILD-TYPE" "OR10T2 WILD-TYPE" "OR10T2 WILD-TYPE" "OR10T2 WILD-TYPE" 
      TCGA-05-4390       TCGA-05-4396       TCGA-05-4397       TCGA-05-4398 
"OR10T2 WILD-TYPE" "OR10T2 WILD-TYPE" "OR10T2 WILD-TYPE" "OR10T2 WILD-TYPE" 
      TCGA-05-4402       TCGA-05-4405       TCGA-05-4415       TCGA-05-4417 
"OR10T2 WILD-TYPE" "OR10T2 WILD-TYPE" "OR10T2 WILD-TYPE" "OR10T2 WILD-TYPE" 
      TCGA-05-4418       TCGA-05-4420       TCGA-05-4424       TCGA-05-4426 
"OR10T2 WILD-TYPE" "OR10T2 WILD-TYPE"   "OR10T2 MUTATED" "OR10T2 WILD-TYPE" 
      TCGA-05-4427       TCGA-05-4430       TCGA-05-4432       TCGA-05-4433 
"OR10T2 WILD-TYPE" "OR10T2 WILD-TYPE"   "OR10T2 MUTATED" "OR10T2 WILD-TYPE" 
      TCGA-05-4434       TCGA-05-5420       TCGA-05-5423       TCGA-05-5425 
"OR10T2 WILD-TYPE" "OR10T2 WILD-TYPE" "OR10T2 WILD-TYPE" "OR10T2 WILD-TYPE" 
      TCGA-05-5429       TCGA-05-5715       TCGA-35-3615       TCGA-35-4122 
"OR10T2 WILD-TYPE" "OR10T2 WILD-TYPE" "OR10T2 WILD-TYPE" "OR10T2 WILD-TYPE" 
      TCGA-35-4123       TCGA-35-5375       TCGA-38-4625       TCGA-38-4626 
"OR10T2 WILD-TYPE" "OR10T2 WILD-TYPE" "OR10T2 WILD-TYPE" "OR10T2 WILD-TYPE" 
      TCGA-38-4627       TCGA-38-4628       TCGA-38-4629       TCGA-38-4630 
"OR10T2 WILD-TYPE" "OR10T2 WILD-TYPE" "OR10T2 WILD-TYPE" "OR10T2 WILD-TYPE" 
      TCGA-38-4631       TCGA-38-4632       TCGA-38-6178       TCGA-44-2655 
"OR10T2 WILD-TYPE" "OR10T2 WILD-TYPE" "OR10T2 WILD-TYPE" "OR10T2 WILD-TYPE" 
      TCGA-44-2656       TCGA-44-2657       TCGA-44-2659       TCGA-44-2661 
"OR10T2 WILD-TYPE" "OR10T2 WILD-TYPE"   "OR10T2 MUTATED" "OR10T2 WILD-TYPE" 
      TCGA-44-2662       TCGA-44-2665       TCGA-44-2666       TCGA-44-2668 
"OR10T2 WILD-TYPE" "OR10T2 WILD-TYPE" "OR10T2 WILD-TYPE" "OR10T2 WILD-TYPE" 
      TCGA-44-3396       TCGA-44-3398       TCGA-44-3918       TCGA-44-3919 
"OR10T2 WILD-TYPE" "OR10T2 WILD-TYPE" "OR10T2 WILD-TYPE" "OR10T2 WILD-TYPE" 
      TCGA-44-4112       TCGA-44-5643       TCGA-44-5645       TCGA-44-6144 
"OR10T2 WILD-TYPE" "OR10T2 WILD-TYPE" "OR10T2 WILD-TYPE" "OR10T2 WILD-TYPE" 
      TCGA-44-6145       TCGA-44-6146       TCGA-44-6147       TCGA-44-6148 
  "OR10T2 MUTATED" "OR10T2 WILD-TYPE" "OR10T2 WILD-TYPE" "OR10T2 WILD-TYPE" 
      TCGA-44-6774       TCGA-44-6775       TCGA-44-6776       TCGA-44-6777 
"OR10T2 WILD-TYPE" "OR10T2 WILD-TYPE" "OR10T2 WILD-TYPE" "OR10T2 WILD-TYPE" 
      TCGA-44-6778       TCGA-44-6779       TCGA-49-4486       TCGA-49-4487 
"OR10T2 WILD-TYPE" "OR10T2 WILD-TYPE" "OR10T2 WILD-TYPE" "OR10T2 WILD-TYPE" 
      TCGA-49-4488       TCGA-49-4490       TCGA-49-4494       TCGA-49-4501 
"OR10T2 WILD-TYPE" "OR10T2 WILD-TYPE" "OR10T2 WILD-TYPE" "OR10T2 WILD-TYPE" 
      TCGA-49-4505       TCGA-49-4506       TCGA-49-4507       TCGA-49-4510 
"OR10T2 WILD-TYPE" "OR10T2 WILD-TYPE"   "OR10T2 MUTATED" "OR10T2 WILD-TYPE" 
      TCGA-49-4512       TCGA-49-4514       TCGA-49-6742       TCGA-49-6743 
"OR10T2 WILD-TYPE" "OR10T2 WILD-TYPE" "OR10T2 WILD-TYPE" "OR10T2 WILD-TYPE" 
      TCGA-49-6744       TCGA-49-6745       TCGA-50-5044       TCGA-50-5045 
"OR10T2 WILD-TYPE" "OR10T2 WILD-TYPE" "OR10T2 WILD-TYPE" "OR10T2 WILD-TYPE" 
      TCGA-50-5049       TCGA-50-5051       TCGA-50-5055       TCGA-50-5066 
"OR10T2 WILD-TYPE" "OR10T2 WILD-TYPE" "OR10T2 WILD-TYPE" "OR10T2 WILD-TYPE" 
      TCGA-50-5068       TCGA-50-5072       TCGA-50-5930       TCGA-50-5931 
"OR10T2 WILD-TYPE" "OR10T2 WILD-TYPE" "OR10T2 WILD-TYPE" "OR10T2 WILD-TYPE" 
      TCGA-50-5932       TCGA-50-5933       TCGA-50-5935       TCGA-50-5936 
"OR10T2 WILD-TYPE" "OR10T2 WILD-TYPE" "OR10T2 WILD-TYPE" "OR10T2 WILD-TYPE" 
      TCGA-50-5939       TCGA-50-5941       TCGA-50-5942       TCGA-50-5944 
"OR10T2 WILD-TYPE" "OR10T2 WILD-TYPE" "OR10T2 WILD-TYPE" "OR10T2 WILD-TYPE" 
      TCGA-50-5946       TCGA-50-6590       TCGA-50-6591       TCGA-50-6592 
"OR10T2 WILD-TYPE" "OR10T2 WILD-TYPE" "OR10T2 WILD-TYPE" "OR10T2 WILD-TYPE" 
      TCGA-50-6593       TCGA-50-6594       TCGA-50-6595       TCGA-50-6597 
"OR10T2 WILD-TYPE" "OR10T2 WILD-TYPE" "OR10T2 WILD-TYPE" "OR10T2 WILD-TYPE" 
      TCGA-55-1592       TCGA-55-1594       TCGA-55-1595       TCGA-55-1596 
  "OR10T2 MUTATED" "OR10T2 WILD-TYPE" "OR10T2 WILD-TYPE" "OR10T2 WILD-TYPE" 
      TCGA-55-5899       TCGA-55-6543       TCGA-55-6642       TCGA-55-6712 
"OR10T2 WILD-TYPE" "OR10T2 WILD-TYPE" "OR10T2 WILD-TYPE" "OR10T2 WILD-TYPE" 
      TCGA-64-1676       TCGA-64-1677       TCGA-64-1678       TCGA-64-1680 
"OR10T2 WILD-TYPE" "OR10T2 WILD-TYPE" "OR10T2 WILD-TYPE" "OR10T2 WILD-TYPE" 
      TCGA-64-5774       TCGA-64-5775       TCGA-64-5778       TCGA-64-5779 
"OR10T2 WILD-TYPE" "OR10T2 WILD-TYPE" "OR10T2 WILD-TYPE" "OR10T2 WILD-TYPE" 
      TCGA-64-5781       TCGA-64-5815       TCGA-67-3770       TCGA-67-3771 
  "OR10T2 MUTATED" "OR10T2 WILD-TYPE" "OR10T2 WILD-TYPE" "OR10T2 WILD-TYPE" 
      TCGA-67-3772       TCGA-67-3773       TCGA-67-3774       TCGA-67-6215 
"OR10T2 WILD-TYPE" "OR10T2 WILD-TYPE" "OR10T2 WILD-TYPE" "OR10T2 WILD-TYPE" 
      TCGA-67-6216       TCGA-67-6217       TCGA-71-6725       TCGA-73-4658 
"OR10T2 WILD-TYPE" "OR10T2 WILD-TYPE" "OR10T2 WILD-TYPE" "OR10T2 WILD-TYPE" 
      TCGA-73-4659       TCGA-73-4662       TCGA-73-4666       TCGA-73-4668 
"OR10T2 WILD-TYPE" "OR10T2 WILD-TYPE" "OR10T2 WILD-TYPE" "OR10T2 WILD-TYPE" 
      TCGA-73-4670       TCGA-73-4675       TCGA-73-4676       TCGA-73-4677 
"OR10T2 WILD-TYPE" "OR10T2 WILD-TYPE" "OR10T2 WILD-TYPE" "OR10T2 WILD-TYPE" 
      TCGA-91-6828       TCGA-91-6829       TCGA-91-6831       TCGA-91-6835 
"OR10T2 WILD-TYPE" "OR10T2 WILD-TYPE" "OR10T2 WILD-TYPE" "OR10T2 WILD-TYPE" 
      TCGA-91-6836 
"OR10T2 WILD-TYPE" 
[1] "hr=" "1.1"
D121V2, continuous
D121V3, binary
[1] "tbl2"
                  cls
clus               [,1] [,2]
  OR10T2 MUTATED      4    3
  OR10T2 WILD-TYPE   89   76
        clus
vv       OR10T2 MUTATED OR10T2 WILD-TYPE
  FEMALE              4               89
  MALE                3               76
D121V4, continuous
D121V5, multiclass
D121V6, multiclass
    clus
vv   OR10T2 MUTATED OR10T2 WILD-TYPE
  T1              2               39
  T2              3              105
  T3              2               12
  T4              0                8
D121V7, multiclass
       clus
vv      OR10T2 MUTATED OR10T2 WILD-TYPE
  N0                 4               91
  N1                 3               34
  N2+N3              0               35
D121V8, multiclass
    clus
vv   OR10T2 MUTATED OR10T2 WILD-TYPE
  M0              7              130
  M1              0                9
  MX              0               22
D121V9, multiclass
     clus
vv    OR10T2 MUTATED OR10T2 WILD-TYPE
  I                3               85
  II               3               30
  III              1               38
  IV               0                9
D121V10, binary
[1] "tbl2"
                  cls
clus               [,1] [,2]
  OR10T2 MUTATED      1    6
  OR10T2 WILD-TYPE   15  150
     clus
vv    OR10T2 MUTATED OR10T2 WILD-TYPE
  NO               1               15
  YES              6              150
D121V11, continuous
D121V12, continuous
D121V13, multiclass
                                             clus
vv                                            OR10T2 MUTATED OR10T2 WILD-TYPE
  CURRENT REFORMED SMOKER FOR < OR = 15 YEARS              6               56
  CURRENT REFORMED SMOKER FOR > 15 YEARS                   0               46
  CURRENT SMOKER                                           1               27
  LIFELONG NON-SMOKER                                      0               24
D121V14, continuous

Clustering(122) Variable = RB1 MUTATION ANALYSIS
D122V1, survival
               sevent
clus2            0  1
  RB1 MUTATED    4  3
  RB1 WILD-TYPE 95 47
  RB1 MUTATED RB1 WILD-TYPE 
            7           142 
  RB1 MUTATED RB1 WILD-TYPE 
            3            47 
$`RB1 MUTATED`
TCGA-05-4397 TCGA-05-4415 TCGA-35-5375 TCGA-44-6775 TCGA-91-6828 TCGA-91-6829 
       24.03         2.96         8.68         2.70         1.22        41.33 
TCGA-91-6835 
        1.15 

$`RB1 WILD-TYPE`
TCGA-05-4249 TCGA-05-4250 TCGA-05-4382 TCGA-05-4384 TCGA-05-4390 TCGA-05-4396 
       38.07         3.98        19.92        14.01        37.02         9.96 
TCGA-05-4398 TCGA-05-4402 TCGA-05-4405 TCGA-05-4417 TCGA-05-4418 TCGA-05-4420 
       47.05         8.02        20.05        14.93         8.98        29.95 
TCGA-05-4424 TCGA-05-4426 TCGA-05-4427 TCGA-05-4430 TCGA-05-4432 TCGA-05-4433 
       30.02        26.01        26.01        25.02        25.02        24.00 
TCGA-05-4434 TCGA-05-5420 TCGA-05-5423 TCGA-05-5425 TCGA-05-5429 TCGA-05-5715 
       15.02         1.02         4.96         2.96         0.99         2.04 
TCGA-35-3615 TCGA-35-4122 TCGA-35-4123 TCGA-38-4625 TCGA-38-4626 TCGA-38-4627 
        0.46         7.36         5.95        47.61        85.32        37.71 
TCGA-38-4628 TCGA-38-4629 TCGA-38-4630 TCGA-38-4631 TCGA-38-4632 TCGA-38-6178 
       49.02        28.37        35.28        11.64        44.61         5.19 
TCGA-44-2655 TCGA-44-2656 TCGA-44-2657 TCGA-44-2659 TCGA-44-2661 TCGA-44-2662 
       18.87        19.10        13.15        17.39         3.39        15.78 
TCGA-44-2665 TCGA-44-2666 TCGA-44-2668 TCGA-44-3396 TCGA-44-3398 TCGA-44-3918 
       13.15         3.19         8.09        10.22         8.32         6.44 
TCGA-44-3919 TCGA-44-4112 TCGA-44-5643 TCGA-44-5645 TCGA-44-6144 TCGA-44-6145 
        6.21         4.60         3.48         6.84         0.30         3.35 
TCGA-44-6146 TCGA-44-6147 TCGA-44-6148 TCGA-44-6774 TCGA-44-6776 TCGA-44-6777 
        9.93         7.76         3.12         5.42        63.72        32.45 
TCGA-44-6778 TCGA-44-6779 TCGA-49-4486 TCGA-49-4487 TCGA-49-4488 TCGA-49-4490 
       36.49        16.41        76.21        28.11        28.57        12.66 
TCGA-49-4494 TCGA-49-4501 TCGA-49-4505 TCGA-49-4506 TCGA-49-4507 TCGA-49-4510 
       35.54        46.72        14.07        32.84         8.81        29.46 
TCGA-49-4512 TCGA-49-4514 TCGA-49-6742 TCGA-49-6743 TCGA-49-6744 TCGA-49-6745 
       29.75        43.20        15.02        12.13        12.99         4.93 
TCGA-50-5044 TCGA-50-5045 TCGA-50-5049 TCGA-50-5051 TCGA-50-5055 TCGA-50-5066 
       20.48        71.47        48.82        14.96        25.81         9.76 
TCGA-50-5068 TCGA-50-5072 TCGA-50-5930 TCGA-50-5931 TCGA-50-5932 TCGA-50-5933 
       49.28         8.05         9.27         8.78        35.87        77.88 
TCGA-50-5935 TCGA-50-5936 TCGA-50-5939 TCGA-50-5941 TCGA-50-5942 TCGA-50-5944 
       21.47         8.45        15.12         9.37         4.44        12.26 
TCGA-50-5946 TCGA-50-6590 TCGA-50-6591 TCGA-50-6592 TCGA-50-6593 TCGA-50-6594 
       11.47        42.31         3.88        25.51        11.05        12.16 
TCGA-50-6595 TCGA-50-6597 TCGA-55-1592 TCGA-55-1594 TCGA-55-1595 TCGA-55-1596 
        6.21        33.37        23.05        38.73        48.62        45.17 
TCGA-55-5899 TCGA-55-6543 TCGA-55-6642 TCGA-55-6712 TCGA-64-1676 TCGA-64-1677 
        2.86         0.07        32.61         0.79        56.81        20.65 
TCGA-64-1678 TCGA-64-1680 TCGA-64-5774 TCGA-64-5775 TCGA-64-5778 TCGA-64-5779 
       39.09        37.02        83.84         0.10        30.44        16.67 
TCGA-64-5781 TCGA-64-5815 TCGA-67-3770 TCGA-67-3771 TCGA-67-3772 TCGA-67-3773 
       39.52         7.33         0.99         1.97         0.59         2.04 
TCGA-67-3774 TCGA-67-6215 TCGA-67-6216 TCGA-67-6217 TCGA-71-6725 TCGA-73-4658 
        0.59         0.89         0.69        13.87         2.01        52.57 
TCGA-73-4659 TCGA-73-4662 TCGA-73-4666 TCGA-73-4668 TCGA-73-4670 TCGA-73-4675 
       23.38        29.95        20.28        15.35         0.46         1.32 
TCGA-73-4676 TCGA-73-4677 TCGA-91-6831 TCGA-91-6836 
        4.01         1.25         1.28         0.36 

  RB1 MUTATED RB1 WILD-TYPE 
         1.15          0.07 
  RB1 MUTATED RB1 WILD-TYPE 
        41.33         85.32 
  RB1 MUTATED RB1 WILD-TYPE 
         2.96         14.04 
[1] "1.1 - 41.3 (3.0)"  "0.1 - 85.3 (14.0)"
   TCGA-05-4249    TCGA-05-4250    TCGA-05-4382    TCGA-05-4384    TCGA-05-4390 
"RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" 
   TCGA-05-4396    TCGA-05-4397    TCGA-05-4398    TCGA-05-4402    TCGA-05-4405 
"RB1 WILD-TYPE"   "RB1 MUTATED" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" 
   TCGA-05-4415    TCGA-05-4417    TCGA-05-4418    TCGA-05-4420    TCGA-05-4424 
  "RB1 MUTATED" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" 
   TCGA-05-4426    TCGA-05-4427    TCGA-05-4430    TCGA-05-4432    TCGA-05-4433 
"RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" 
   TCGA-05-4434    TCGA-05-5420    TCGA-05-5423    TCGA-05-5425    TCGA-05-5429 
"RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" 
   TCGA-05-5715    TCGA-35-3615    TCGA-35-4122    TCGA-35-4123    TCGA-35-5375 
"RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE"   "RB1 MUTATED" 
   TCGA-38-4625    TCGA-38-4626    TCGA-38-4627    TCGA-38-4628    TCGA-38-4629 
"RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" 
   TCGA-38-4630    TCGA-38-4631    TCGA-38-4632    TCGA-38-6178    TCGA-44-2655 
"RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" 
   TCGA-44-2656    TCGA-44-2657    TCGA-44-2659    TCGA-44-2661    TCGA-44-2662 
"RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" 
   TCGA-44-2665    TCGA-44-2666    TCGA-44-2668    TCGA-44-3396    TCGA-44-3398 
"RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" 
   TCGA-44-3918    TCGA-44-3919    TCGA-44-4112    TCGA-44-5643    TCGA-44-5645 
"RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" 
   TCGA-44-6144    TCGA-44-6145    TCGA-44-6146    TCGA-44-6147    TCGA-44-6148 
"RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" 
   TCGA-44-6774    TCGA-44-6775    TCGA-44-6776    TCGA-44-6777    TCGA-44-6778 
"RB1 WILD-TYPE"   "RB1 MUTATED" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" 
   TCGA-44-6779    TCGA-49-4486    TCGA-49-4487    TCGA-49-4488    TCGA-49-4490 
"RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" 
   TCGA-49-4494    TCGA-49-4501    TCGA-49-4505    TCGA-49-4506    TCGA-49-4507 
"RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" 
   TCGA-49-4510    TCGA-49-4512    TCGA-49-4514    TCGA-49-6742    TCGA-49-6743 
"RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" 
   TCGA-49-6744    TCGA-49-6745    TCGA-50-5044    TCGA-50-5045    TCGA-50-5049 
"RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" 
   TCGA-50-5051    TCGA-50-5055    TCGA-50-5066    TCGA-50-5068    TCGA-50-5072 
"RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" 
   TCGA-50-5930    TCGA-50-5931    TCGA-50-5932    TCGA-50-5933    TCGA-50-5935 
"RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" 
   TCGA-50-5936    TCGA-50-5939    TCGA-50-5941    TCGA-50-5942    TCGA-50-5944 
"RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" 
   TCGA-50-5946    TCGA-50-6590    TCGA-50-6591    TCGA-50-6592    TCGA-50-6593 
"RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" 
   TCGA-50-6594    TCGA-50-6595    TCGA-50-6597    TCGA-55-1592    TCGA-55-1594 
"RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" 
   TCGA-55-1595    TCGA-55-1596    TCGA-55-5899    TCGA-55-6543    TCGA-55-6642 
"RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" 
   TCGA-55-6712    TCGA-64-1676    TCGA-64-1677    TCGA-64-1678    TCGA-64-1680 
"RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" 
   TCGA-64-5774    TCGA-64-5775    TCGA-64-5778    TCGA-64-5779    TCGA-64-5781 
"RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" 
   TCGA-64-5815    TCGA-67-3770    TCGA-67-3771    TCGA-67-3772    TCGA-67-3773 
"RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" 
   TCGA-67-3774    TCGA-67-6215    TCGA-67-6216    TCGA-67-6217    TCGA-71-6725 
"RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" 
   TCGA-73-4658    TCGA-73-4659    TCGA-73-4662    TCGA-73-4666    TCGA-73-4668 
"RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" 
   TCGA-73-4670    TCGA-73-4675    TCGA-73-4676    TCGA-73-4677    TCGA-91-6828 
"RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE"   "RB1 MUTATED" 
   TCGA-91-6829    TCGA-91-6831    TCGA-91-6835    TCGA-91-6836 
  "RB1 MUTATED" "RB1 WILD-TYPE"   "RB1 MUTATED" "RB1 WILD-TYPE" 
   TCGA-05-4249    TCGA-05-4250    TCGA-05-4382    TCGA-05-4384    TCGA-05-4390 
"RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" 
   TCGA-05-4396    TCGA-05-4397    TCGA-05-4398    TCGA-05-4402    TCGA-05-4405 
"RB1 WILD-TYPE"   "RB1 MUTATED" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" 
   TCGA-05-4415    TCGA-05-4417    TCGA-05-4418    TCGA-05-4420    TCGA-05-4424 
  "RB1 MUTATED" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" 
   TCGA-05-4426    TCGA-05-4427    TCGA-05-4430    TCGA-05-4432    TCGA-05-4433 
"RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" 
   TCGA-05-4434    TCGA-05-5420    TCGA-05-5423    TCGA-05-5425    TCGA-05-5429 
"RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" 
   TCGA-05-5715    TCGA-35-3615    TCGA-35-4122    TCGA-35-4123    TCGA-35-5375 
"RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE"   "RB1 MUTATED" 
   TCGA-38-4625    TCGA-38-4626    TCGA-38-4627    TCGA-38-4628    TCGA-38-4629 
"RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" 
   TCGA-38-4630    TCGA-38-4631    TCGA-38-4632    TCGA-38-6178    TCGA-44-2655 
"RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" 
   TCGA-44-2656    TCGA-44-2657    TCGA-44-2659    TCGA-44-2661    TCGA-44-2662 
"RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" 
   TCGA-44-2665    TCGA-44-2666    TCGA-44-2668    TCGA-44-3396    TCGA-44-3398 
"RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" 
   TCGA-44-3918    TCGA-44-3919    TCGA-44-4112    TCGA-44-5643    TCGA-44-5645 
"RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" 
   TCGA-44-6144    TCGA-44-6145    TCGA-44-6146    TCGA-44-6147    TCGA-44-6148 
"RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" 
   TCGA-44-6774    TCGA-44-6775    TCGA-44-6776    TCGA-44-6777    TCGA-44-6778 
"RB1 WILD-TYPE"   "RB1 MUTATED" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" 
   TCGA-44-6779    TCGA-49-4486    TCGA-49-4487    TCGA-49-4488    TCGA-49-4490 
"RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" 
   TCGA-49-4494    TCGA-49-4501    TCGA-49-4505    TCGA-49-4506    TCGA-49-4507 
"RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" 
   TCGA-49-4510    TCGA-49-4512    TCGA-49-4514    TCGA-49-6742    TCGA-49-6743 
"RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" 
   TCGA-49-6744    TCGA-49-6745    TCGA-50-5044    TCGA-50-5045    TCGA-50-5049 
"RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" 
   TCGA-50-5051    TCGA-50-5055    TCGA-50-5066    TCGA-50-5068    TCGA-50-5072 
"RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" 
   TCGA-50-5930    TCGA-50-5931    TCGA-50-5932    TCGA-50-5933    TCGA-50-5935 
"RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" 
   TCGA-50-5936    TCGA-50-5939    TCGA-50-5941    TCGA-50-5942    TCGA-50-5944 
"RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" 
   TCGA-50-5946    TCGA-50-6590    TCGA-50-6591    TCGA-50-6592    TCGA-50-6593 
"RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" 
   TCGA-50-6594    TCGA-50-6595    TCGA-50-6597    TCGA-55-1592    TCGA-55-1594 
"RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" 
   TCGA-55-1595    TCGA-55-1596    TCGA-55-5899    TCGA-55-6543    TCGA-55-6642 
"RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" 
   TCGA-55-6712    TCGA-64-1676    TCGA-64-1677    TCGA-64-1678    TCGA-64-1680 
"RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" 
   TCGA-64-5774    TCGA-64-5775    TCGA-64-5778    TCGA-64-5779    TCGA-64-5781 
"RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" 
   TCGA-64-5815    TCGA-67-3770    TCGA-67-3771    TCGA-67-3772    TCGA-67-3773 
"RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" 
   TCGA-67-3774    TCGA-67-6215    TCGA-67-6216    TCGA-67-6217    TCGA-71-6725 
"RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" 
   TCGA-73-4658    TCGA-73-4659    TCGA-73-4662    TCGA-73-4666    TCGA-73-4668 
"RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" 
   TCGA-73-4670    TCGA-73-4675    TCGA-73-4676    TCGA-73-4677    TCGA-91-6828 
"RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE"   "RB1 MUTATED" 
   TCGA-91-6829    TCGA-91-6831    TCGA-91-6835    TCGA-91-6836 
  "RB1 MUTATED" "RB1 WILD-TYPE"   "RB1 MUTATED" "RB1 WILD-TYPE" 
   TCGA-05-4249    TCGA-05-4250    TCGA-05-4382    TCGA-05-4384    TCGA-05-4390 
"RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" 
   TCGA-05-4396    TCGA-05-4397    TCGA-05-4398    TCGA-05-4402    TCGA-05-4405 
"RB1 WILD-TYPE"   "RB1 MUTATED" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" 
   TCGA-05-4415    TCGA-05-4417    TCGA-05-4418    TCGA-05-4420    TCGA-05-4424 
  "RB1 MUTATED" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" 
   TCGA-05-4426    TCGA-05-4427    TCGA-05-4430    TCGA-05-4432    TCGA-05-4433 
"RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" 
   TCGA-05-4434    TCGA-05-5420    TCGA-05-5423    TCGA-05-5425    TCGA-05-5429 
"RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" 
   TCGA-05-5715    TCGA-35-3615    TCGA-35-4122    TCGA-35-4123    TCGA-35-5375 
"RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE"   "RB1 MUTATED" 
   TCGA-38-4625    TCGA-38-4626    TCGA-38-4627    TCGA-38-4628    TCGA-38-4629 
"RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" 
   TCGA-38-4630    TCGA-38-4631    TCGA-38-4632    TCGA-38-6178    TCGA-44-2655 
"RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" 
   TCGA-44-2656    TCGA-44-2657    TCGA-44-2659    TCGA-44-2661    TCGA-44-2662 
"RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" 
   TCGA-44-2665    TCGA-44-2666    TCGA-44-2668    TCGA-44-3396    TCGA-44-3398 
"RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" 
   TCGA-44-3918    TCGA-44-3919    TCGA-44-4112    TCGA-44-5643    TCGA-44-5645 
"RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" 
   TCGA-44-6144    TCGA-44-6145    TCGA-44-6146    TCGA-44-6147    TCGA-44-6148 
"RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" 
   TCGA-44-6774    TCGA-44-6775    TCGA-44-6776    TCGA-44-6777    TCGA-44-6778 
"RB1 WILD-TYPE"   "RB1 MUTATED" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" 
   TCGA-44-6779    TCGA-49-4486    TCGA-49-4487    TCGA-49-4488    TCGA-49-4490 
"RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" 
   TCGA-49-4494    TCGA-49-4501    TCGA-49-4505    TCGA-49-4506    TCGA-49-4507 
"RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" 
   TCGA-49-4510    TCGA-49-4512    TCGA-49-4514    TCGA-49-6742    TCGA-49-6743 
"RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" 
   TCGA-49-6744    TCGA-49-6745    TCGA-50-5044    TCGA-50-5045    TCGA-50-5049 
"RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" 
   TCGA-50-5051    TCGA-50-5055    TCGA-50-5066    TCGA-50-5068    TCGA-50-5072 
"RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" 
   TCGA-50-5930    TCGA-50-5931    TCGA-50-5932    TCGA-50-5933    TCGA-50-5935 
"RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" 
   TCGA-50-5936    TCGA-50-5939    TCGA-50-5941    TCGA-50-5942    TCGA-50-5944 
"RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" 
   TCGA-50-5946    TCGA-50-6590    TCGA-50-6591    TCGA-50-6592    TCGA-50-6593 
"RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" 
   TCGA-50-6594    TCGA-50-6595    TCGA-50-6597    TCGA-55-1592    TCGA-55-1594 
"RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" 
   TCGA-55-1595    TCGA-55-1596    TCGA-55-5899    TCGA-55-6543    TCGA-55-6642 
"RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" 
   TCGA-55-6712    TCGA-64-1676    TCGA-64-1677    TCGA-64-1678    TCGA-64-1680 
"RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" 
   TCGA-64-5774    TCGA-64-5775    TCGA-64-5778    TCGA-64-5779    TCGA-64-5781 
"RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" 
   TCGA-64-5815    TCGA-67-3770    TCGA-67-3771    TCGA-67-3772    TCGA-67-3773 
"RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" 
   TCGA-67-3774    TCGA-67-6215    TCGA-67-6216    TCGA-67-6217    TCGA-71-6725 
"RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" 
   TCGA-73-4658    TCGA-73-4659    TCGA-73-4662    TCGA-73-4666    TCGA-73-4668 
"RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" 
   TCGA-73-4670    TCGA-73-4675    TCGA-73-4676    TCGA-73-4677    TCGA-91-6828 
"RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE"   "RB1 MUTATED" 
   TCGA-91-6829    TCGA-91-6831    TCGA-91-6835    TCGA-91-6836 
  "RB1 MUTATED" "RB1 WILD-TYPE"   "RB1 MUTATED" "RB1 WILD-TYPE" 
[1] "hr=" "2.6"
D122V2, continuous
D122V3, binary
[1] "tbl2"
               cls
clus            [,1] [,2]
  RB1 MUTATED      2    5
  RB1 WILD-TYPE   91   74
        clus
vv       RB1 MUTATED RB1 WILD-TYPE
  FEMALE           2            91
  MALE             5            74
D122V4, continuous
[1] "Remove cluster labels:" "RB1 MUTATED"           
clus
  RB1 MUTATED RB1 WILD-TYPE 
            1            11 
   TCGA-35-4122    TCGA-35-4123    TCGA-64-1677    TCGA-64-5778    TCGA-71-6725 
"RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" 
   TCGA-73-4659    TCGA-73-4662    TCGA-73-4666    TCGA-73-4668    TCGA-73-4676 
"RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" 
   TCGA-75-5122 
"RB1 WILD-TYPE" 
D122V5, multiclass
D122V6, multiclass
    clus
vv   RB1 MUTATED RB1 WILD-TYPE
  T1           2            39
  T2           4           104
  T3           0            14
  T4           1             7
D122V7, multiclass
       clus
vv      RB1 MUTATED RB1 WILD-TYPE
  N0              4            91
  N1              1            36
  N2+N3           2            33
D122V8, multiclass
    clus
vv   RB1 MUTATED RB1 WILD-TYPE
  M0           3           134
  M1           0             9
  MX           4            18
D122V9, multiclass
     clus
vv    RB1 MUTATED RB1 WILD-TYPE
  I             4            84
  II            1            32
  III           2            37
  IV            0             9
D122V10, binary
[1] "tbl2"
               cls
clus            [,1] [,2]
  RB1 MUTATED      0    7
  RB1 WILD-TYPE   16  149
     clus
vv    RB1 MUTATED RB1 WILD-TYPE
  NO            0            16
  YES           7           149
D122V11, continuous
D122V12, continuous
D122V13, multiclass
                                             clus
vv                                            RB1 MUTATED RB1 WILD-TYPE
  CURRENT REFORMED SMOKER FOR < OR = 15 YEARS           4            58
  CURRENT REFORMED SMOKER FOR > 15 YEARS                2            44
  CURRENT SMOKER                                        1            27
  LIFELONG NON-SMOKER                                   0            24
D122V14, continuous

Clustering(123) Variable = OR5B3 MUTATION ANALYSIS
D123V1, survival
                 sevent
clus2              0  1
  OR5B3 MUTATED    4  3
  OR5B3 WILD-TYPE 95 47
  OR5B3 MUTATED OR5B3 WILD-TYPE 
              7             142 
  OR5B3 MUTATED OR5B3 WILD-TYPE 
              3              47 
$`OR5B3 MUTATED`
TCGA-05-4427 TCGA-35-3615 TCGA-38-4629 TCGA-38-4631 TCGA-44-2657 TCGA-73-4666 
       26.01         0.46        28.37        11.64        13.15        20.28 
TCGA-73-4677 
        1.25 

$`OR5B3 WILD-TYPE`
TCGA-05-4249 TCGA-05-4250 TCGA-05-4382 TCGA-05-4384 TCGA-05-4390 TCGA-05-4396 
       38.07         3.98        19.92        14.01        37.02         9.96 
TCGA-05-4397 TCGA-05-4398 TCGA-05-4402 TCGA-05-4405 TCGA-05-4415 TCGA-05-4417 
       24.03        47.05         8.02        20.05         2.96        14.93 
TCGA-05-4418 TCGA-05-4420 TCGA-05-4424 TCGA-05-4426 TCGA-05-4430 TCGA-05-4432 
        8.98        29.95        30.02        26.01        25.02        25.02 
TCGA-05-4433 TCGA-05-4434 TCGA-05-5420 TCGA-05-5423 TCGA-05-5425 TCGA-05-5429 
       24.00        15.02         1.02         4.96         2.96         0.99 
TCGA-05-5715 TCGA-35-4122 TCGA-35-4123 TCGA-35-5375 TCGA-38-4625 TCGA-38-4626 
        2.04         7.36         5.95         8.68        47.61        85.32 
TCGA-38-4627 TCGA-38-4628 TCGA-38-4630 TCGA-38-4632 TCGA-38-6178 TCGA-44-2655 
       37.71        49.02        35.28        44.61         5.19        18.87 
TCGA-44-2656 TCGA-44-2659 TCGA-44-2661 TCGA-44-2662 TCGA-44-2665 TCGA-44-2666 
       19.10        17.39         3.39        15.78        13.15         3.19 
TCGA-44-2668 TCGA-44-3396 TCGA-44-3398 TCGA-44-3918 TCGA-44-3919 TCGA-44-4112 
        8.09        10.22         8.32         6.44         6.21         4.60 
TCGA-44-5643 TCGA-44-5645 TCGA-44-6144 TCGA-44-6145 TCGA-44-6146 TCGA-44-6147 
        3.48         6.84         0.30         3.35         9.93         7.76 
TCGA-44-6148 TCGA-44-6774 TCGA-44-6775 TCGA-44-6776 TCGA-44-6777 TCGA-44-6778 
        3.12         5.42         2.70        63.72        32.45        36.49 
TCGA-44-6779 TCGA-49-4486 TCGA-49-4487 TCGA-49-4488 TCGA-49-4490 TCGA-49-4494 
       16.41        76.21        28.11        28.57        12.66        35.54 
TCGA-49-4501 TCGA-49-4505 TCGA-49-4506 TCGA-49-4507 TCGA-49-4510 TCGA-49-4512 
       46.72        14.07        32.84         8.81        29.46        29.75 
TCGA-49-4514 TCGA-49-6742 TCGA-49-6743 TCGA-49-6744 TCGA-49-6745 TCGA-50-5044 
       43.20        15.02        12.13        12.99         4.93        20.48 
TCGA-50-5045 TCGA-50-5049 TCGA-50-5051 TCGA-50-5055 TCGA-50-5066 TCGA-50-5068 
       71.47        48.82        14.96        25.81         9.76        49.28 
TCGA-50-5072 TCGA-50-5930 TCGA-50-5931 TCGA-50-5932 TCGA-50-5933 TCGA-50-5935 
        8.05         9.27         8.78        35.87        77.88        21.47 
TCGA-50-5936 TCGA-50-5939 TCGA-50-5941 TCGA-50-5942 TCGA-50-5944 TCGA-50-5946 
        8.45        15.12         9.37         4.44        12.26        11.47 
TCGA-50-6590 TCGA-50-6591 TCGA-50-6592 TCGA-50-6593 TCGA-50-6594 TCGA-50-6595 
       42.31         3.88        25.51        11.05        12.16         6.21 
TCGA-50-6597 TCGA-55-1592 TCGA-55-1594 TCGA-55-1595 TCGA-55-1596 TCGA-55-5899 
       33.37        23.05        38.73        48.62        45.17         2.86 
TCGA-55-6543 TCGA-55-6642 TCGA-55-6712 TCGA-64-1676 TCGA-64-1677 TCGA-64-1678 
        0.07        32.61         0.79        56.81        20.65        39.09 
TCGA-64-1680 TCGA-64-5774 TCGA-64-5775 TCGA-64-5778 TCGA-64-5779 TCGA-64-5781 
       37.02        83.84         0.10        30.44        16.67        39.52 
TCGA-64-5815 TCGA-67-3770 TCGA-67-3771 TCGA-67-3772 TCGA-67-3773 TCGA-67-3774 
        7.33         0.99         1.97         0.59         2.04         0.59 
TCGA-67-6215 TCGA-67-6216 TCGA-67-6217 TCGA-71-6725 TCGA-73-4658 TCGA-73-4659 
        0.89         0.69        13.87         2.01        52.57        23.38 
TCGA-73-4662 TCGA-73-4668 TCGA-73-4670 TCGA-73-4675 TCGA-73-4676 TCGA-91-6828 
       29.95        15.35         0.46         1.32         4.01         1.22 
TCGA-91-6829 TCGA-91-6831 TCGA-91-6835 TCGA-91-6836 
       41.33         1.28         1.15         0.36 

  OR5B3 MUTATED OR5B3 WILD-TYPE 
           0.46            0.07 
  OR5B3 MUTATED OR5B3 WILD-TYPE 
          28.37           85.32 
  OR5B3 MUTATED OR5B3 WILD-TYPE 
          13.15           13.94 
[1] "0.5 - 28.4 (13.2)" "0.1 - 85.3 (13.9)"
     TCGA-05-4249      TCGA-05-4250      TCGA-05-4382      TCGA-05-4384 
"OR5B3 WILD-TYPE" "OR5B3 WILD-TYPE" "OR5B3 WILD-TYPE" "OR5B3 WILD-TYPE" 
     TCGA-05-4390      TCGA-05-4396      TCGA-05-4397      TCGA-05-4398 
"OR5B3 WILD-TYPE" "OR5B3 WILD-TYPE" "OR5B3 WILD-TYPE" "OR5B3 WILD-TYPE" 
     TCGA-05-4402      TCGA-05-4405      TCGA-05-4415      TCGA-05-4417 
"OR5B3 WILD-TYPE" "OR5B3 WILD-TYPE" "OR5B3 WILD-TYPE" "OR5B3 WILD-TYPE" 
     TCGA-05-4418      TCGA-05-4420      TCGA-05-4424      TCGA-05-4426 
"OR5B3 WILD-TYPE" "OR5B3 WILD-TYPE" "OR5B3 WILD-TYPE" "OR5B3 WILD-TYPE" 
     TCGA-05-4427      TCGA-05-4430      TCGA-05-4432      TCGA-05-4433 
  "OR5B3 MUTATED" "OR5B3 WILD-TYPE" "OR5B3 WILD-TYPE" "OR5B3 WILD-TYPE" 
     TCGA-05-4434      TCGA-05-5420      TCGA-05-5423      TCGA-05-5425 
"OR5B3 WILD-TYPE" "OR5B3 WILD-TYPE" "OR5B3 WILD-TYPE" "OR5B3 WILD-TYPE" 
     TCGA-05-5429      TCGA-05-5715      TCGA-35-3615      TCGA-35-4122 
"OR5B3 WILD-TYPE" "OR5B3 WILD-TYPE"   "OR5B3 MUTATED" "OR5B3 WILD-TYPE" 
     TCGA-35-4123      TCGA-35-5375      TCGA-38-4625      TCGA-38-4626 
"OR5B3 WILD-TYPE" "OR5B3 WILD-TYPE" "OR5B3 WILD-TYPE" "OR5B3 WILD-TYPE" 
     TCGA-38-4627      TCGA-38-4628      TCGA-38-4629      TCGA-38-4630 
"OR5B3 WILD-TYPE" "OR5B3 WILD-TYPE"   "OR5B3 MUTATED" "OR5B3 WILD-TYPE" 
     TCGA-38-4631      TCGA-38-4632      TCGA-38-6178      TCGA-44-2655 
  "OR5B3 MUTATED" "OR5B3 WILD-TYPE" "OR5B3 WILD-TYPE" "OR5B3 WILD-TYPE" 
     TCGA-44-2656      TCGA-44-2657      TCGA-44-2659      TCGA-44-2661 
"OR5B3 WILD-TYPE"   "OR5B3 MUTATED" "OR5B3 WILD-TYPE" "OR5B3 WILD-TYPE" 
     TCGA-44-2662      TCGA-44-2665      TCGA-44-2666      TCGA-44-2668 
"OR5B3 WILD-TYPE" "OR5B3 WILD-TYPE" "OR5B3 WILD-TYPE" "OR5B3 WILD-TYPE" 
     TCGA-44-3396      TCGA-44-3398      TCGA-44-3918      TCGA-44-3919 
"OR5B3 WILD-TYPE" "OR5B3 WILD-TYPE" "OR5B3 WILD-TYPE" "OR5B3 WILD-TYPE" 
     TCGA-44-4112      TCGA-44-5643      TCGA-44-5645      TCGA-44-6144 
"OR5B3 WILD-TYPE" "OR5B3 WILD-TYPE" "OR5B3 WILD-TYPE" "OR5B3 WILD-TYPE" 
     TCGA-44-6145      TCGA-44-6146      TCGA-44-6147      TCGA-44-6148 
"OR5B3 WILD-TYPE" "OR5B3 WILD-TYPE" "OR5B3 WILD-TYPE" "OR5B3 WILD-TYPE" 
     TCGA-44-6774      TCGA-44-6775      TCGA-44-6776      TCGA-44-6777 
"OR5B3 WILD-TYPE" "OR5B3 WILD-TYPE" "OR5B3 WILD-TYPE" "OR5B3 WILD-TYPE" 
     TCGA-44-6778      TCGA-44-6779      TCGA-49-4486      TCGA-49-4487 
"OR5B3 WILD-TYPE" "OR5B3 WILD-TYPE" "OR5B3 WILD-TYPE" "OR5B3 WILD-TYPE" 
     TCGA-49-4488      TCGA-49-4490      TCGA-49-4494      TCGA-49-4501 
"OR5B3 WILD-TYPE" "OR5B3 WILD-TYPE" "OR5B3 WILD-TYPE" "OR5B3 WILD-TYPE" 
     TCGA-49-4505      TCGA-49-4506      TCGA-49-4507      TCGA-49-4510 
"OR5B3 WILD-TYPE" "OR5B3 WILD-TYPE" "OR5B3 WILD-TYPE" "OR5B3 WILD-TYPE" 
     TCGA-49-4512      TCGA-49-4514      TCGA-49-6742      TCGA-49-6743 
"OR5B3 WILD-TYPE" "OR5B3 WILD-TYPE" "OR5B3 WILD-TYPE" "OR5B3 WILD-TYPE" 
     TCGA-49-6744      TCGA-49-6745      TCGA-50-5044      TCGA-50-5045 
"OR5B3 WILD-TYPE" "OR5B3 WILD-TYPE" "OR5B3 WILD-TYPE" "OR5B3 WILD-TYPE" 
     TCGA-50-5049      TCGA-50-5051      TCGA-50-5055      TCGA-50-5066 
"OR5B3 WILD-TYPE" "OR5B3 WILD-TYPE" "OR5B3 WILD-TYPE" "OR5B3 WILD-TYPE" 
     TCGA-50-5068      TCGA-50-5072      TCGA-50-5930      TCGA-50-5931 
"OR5B3 WILD-TYPE" "OR5B3 WILD-TYPE" "OR5B3 WILD-TYPE" "OR5B3 WILD-TYPE" 
     TCGA-50-5932      TCGA-50-5933      TCGA-50-5935      TCGA-50-5936 
"OR5B3 WILD-TYPE" "OR5B3 WILD-TYPE" "OR5B3 WILD-TYPE" "OR5B3 WILD-TYPE" 
     TCGA-50-5939      TCGA-50-5941      TCGA-50-5942      TCGA-50-5944 
"OR5B3 WILD-TYPE" "OR5B3 WILD-TYPE" "OR5B3 WILD-TYPE" "OR5B3 WILD-TYPE" 
     TCGA-50-5946      TCGA-50-6590      TCGA-50-6591      TCGA-50-6592 
"OR5B3 WILD-TYPE" "OR5B3 WILD-TYPE" "OR5B3 WILD-TYPE" "OR5B3 WILD-TYPE" 
     TCGA-50-6593      TCGA-50-6594      TCGA-50-6595      TCGA-50-6597 
"OR5B3 WILD-TYPE" "OR5B3 WILD-TYPE" "OR5B3 WILD-TYPE" "OR5B3 WILD-TYPE" 
     TCGA-55-1592      TCGA-55-1594      TCGA-55-1595      TCGA-55-1596 
"OR5B3 WILD-TYPE" "OR5B3 WILD-TYPE" "OR5B3 WILD-TYPE" "OR5B3 WILD-TYPE" 
     TCGA-55-5899      TCGA-55-6543      TCGA-55-6642      TCGA-55-6712 
"OR5B3 WILD-TYPE" "OR5B3 WILD-TYPE" "OR5B3 WILD-TYPE" "OR5B3 WILD-TYPE" 
     TCGA-64-1676      TCGA-64-1677      TCGA-64-1678      TCGA-64-1680 
"OR5B3 WILD-TYPE" "OR5B3 WILD-TYPE" "OR5B3 WILD-TYPE" "OR5B3 WILD-TYPE" 
     TCGA-64-5774      TCGA-64-5775      TCGA-64-5778      TCGA-64-5779 
"OR5B3 WILD-TYPE" "OR5B3 WILD-TYPE" "OR5B3 WILD-TYPE" "OR5B3 WILD-TYPE" 
     TCGA-64-5781      TCGA-64-5815      TCGA-67-3770      TCGA-67-3771 
"OR5B3 WILD-TYPE" "OR5B3 WILD-TYPE" "OR5B3 WILD-TYPE" "OR5B3 WILD-TYPE" 
     TCGA-67-3772      TCGA-67-3773      TCGA-67-3774      TCGA-67-6215 
"OR5B3 WILD-TYPE" "OR5B3 WILD-TYPE" "OR5B3 WILD-TYPE" "OR5B3 WILD-TYPE" 
     TCGA-67-6216      TCGA-67-6217      TCGA-71-6725      TCGA-73-4658 
"OR5B3 WILD-TYPE" "OR5B3 WILD-TYPE" "OR5B3 WILD-TYPE" "OR5B3 WILD-TYPE" 
     TCGA-73-4659      TCGA-73-4662      TCGA-73-4666      TCGA-73-4668 
"OR5B3 WILD-TYPE" "OR5B3 WILD-TYPE"   "OR5B3 MUTATED" "OR5B3 WILD-TYPE" 
     TCGA-73-4670      TCGA-73-4675      TCGA-73-4676      TCGA-73-4677 
"OR5B3 WILD-TYPE" "OR5B3 WILD-TYPE" "OR5B3 WILD-TYPE"   "OR5B3 MUTATED" 
     TCGA-91-6828      TCGA-91-6829      TCGA-91-6831      TCGA-91-6835 
"OR5B3 WILD-TYPE" "OR5B3 WILD-TYPE" "OR5B3 WILD-TYPE" "OR5B3 WILD-TYPE" 
     TCGA-91-6836 
"OR5B3 WILD-TYPE" 
     TCGA-05-4249      TCGA-05-4250      TCGA-05-4382      TCGA-05-4384 
"OR5B3 WILD-TYPE" "OR5B3 WILD-TYPE" "OR5B3 WILD-TYPE" "OR5B3 WILD-TYPE" 
     TCGA-05-4390      TCGA-05-4396      TCGA-05-4397      TCGA-05-4398 
"OR5B3 WILD-TYPE" "OR5B3 WILD-TYPE" "OR5B3 WILD-TYPE" "OR5B3 WILD-TYPE" 
     TCGA-05-4402      TCGA-05-4405      TCGA-05-4415      TCGA-05-4417 
"OR5B3 WILD-TYPE" "OR5B3 WILD-TYPE" "OR5B3 WILD-TYPE" "OR5B3 WILD-TYPE" 
     TCGA-05-4418      TCGA-05-4420      TCGA-05-4424      TCGA-05-4426 
"OR5B3 WILD-TYPE" "OR5B3 WILD-TYPE" "OR5B3 WILD-TYPE" "OR5B3 WILD-TYPE" 
     TCGA-05-4427      TCGA-05-4430      TCGA-05-4432      TCGA-05-4433 
  "OR5B3 MUTATED" "OR5B3 WILD-TYPE" "OR5B3 WILD-TYPE" "OR5B3 WILD-TYPE" 
     TCGA-05-4434      TCGA-05-5420      TCGA-05-5423      TCGA-05-5425 
"OR5B3 WILD-TYPE" "OR5B3 WILD-TYPE" "OR5B3 WILD-TYPE" "OR5B3 WILD-TYPE" 
     TCGA-05-5429      TCGA-05-5715      TCGA-35-3615      TCGA-35-4122 
"OR5B3 WILD-TYPE" "OR5B3 WILD-TYPE"   "OR5B3 MUTATED" "OR5B3 WILD-TYPE" 
     TCGA-35-4123      TCGA-35-5375      TCGA-38-4625      TCGA-38-4626 
"OR5B3 WILD-TYPE" "OR5B3 WILD-TYPE" "OR5B3 WILD-TYPE" "OR5B3 WILD-TYPE" 
     TCGA-38-4627      TCGA-38-4628      TCGA-38-4629      TCGA-38-4630 
"OR5B3 WILD-TYPE" "OR5B3 WILD-TYPE"   "OR5B3 MUTATED" "OR5B3 WILD-TYPE" 
     TCGA-38-4631      TCGA-38-4632      TCGA-38-6178      TCGA-44-2655 
  "OR5B3 MUTATED" "OR5B3 WILD-TYPE" "OR5B3 WILD-TYPE" "OR5B3 WILD-TYPE" 
     TCGA-44-2656      TCGA-44-2657      TCGA-44-2659      TCGA-44-2661 
"OR5B3 WILD-TYPE"   "OR5B3 MUTATED" "OR5B3 WILD-TYPE" "OR5B3 WILD-TYPE" 
     TCGA-44-2662      TCGA-44-2665      TCGA-44-2666      TCGA-44-2668 
"OR5B3 WILD-TYPE" "OR5B3 WILD-TYPE" "OR5B3 WILD-TYPE" "OR5B3 WILD-TYPE" 
     TCGA-44-3396      TCGA-44-3398      TCGA-44-3918      TCGA-44-3919 
"OR5B3 WILD-TYPE" "OR5B3 WILD-TYPE" "OR5B3 WILD-TYPE" "OR5B3 WILD-TYPE" 
     TCGA-44-4112      TCGA-44-5643      TCGA-44-5645      TCGA-44-6144 
"OR5B3 WILD-TYPE" "OR5B3 WILD-TYPE" "OR5B3 WILD-TYPE" "OR5B3 WILD-TYPE" 
     TCGA-44-6145      TCGA-44-6146      TCGA-44-6147      TCGA-44-6148 
"OR5B3 WILD-TYPE" "OR5B3 WILD-TYPE" "OR5B3 WILD-TYPE" "OR5B3 WILD-TYPE" 
     TCGA-44-6774      TCGA-44-6775      TCGA-44-6776      TCGA-44-6777 
"OR5B3 WILD-TYPE" "OR5B3 WILD-TYPE" "OR5B3 WILD-TYPE" "OR5B3 WILD-TYPE" 
     TCGA-44-6778      TCGA-44-6779      TCGA-49-4486      TCGA-49-4487 
"OR5B3 WILD-TYPE" "OR5B3 WILD-TYPE" "OR5B3 WILD-TYPE" "OR5B3 WILD-TYPE" 
     TCGA-49-4488      TCGA-49-4490      TCGA-49-4494      TCGA-49-4501 
"OR5B3 WILD-TYPE" "OR5B3 WILD-TYPE" "OR5B3 WILD-TYPE" "OR5B3 WILD-TYPE" 
     TCGA-49-4505      TCGA-49-4506      TCGA-49-4507      TCGA-49-4510 
"OR5B3 WILD-TYPE" "OR5B3 WILD-TYPE" "OR5B3 WILD-TYPE" "OR5B3 WILD-TYPE" 
     TCGA-49-4512      TCGA-49-4514      TCGA-49-6742      TCGA-49-6743 
"OR5B3 WILD-TYPE" "OR5B3 WILD-TYPE" "OR5B3 WILD-TYPE" "OR5B3 WILD-TYPE" 
     TCGA-49-6744      TCGA-49-6745      TCGA-50-5044      TCGA-50-5045 
"OR5B3 WILD-TYPE" "OR5B3 WILD-TYPE" "OR5B3 WILD-TYPE" "OR5B3 WILD-TYPE" 
     TCGA-50-5049      TCGA-50-5051      TCGA-50-5055      TCGA-50-5066 
"OR5B3 WILD-TYPE" "OR5B3 WILD-TYPE" "OR5B3 WILD-TYPE" "OR5B3 WILD-TYPE" 
     TCGA-50-5068      TCGA-50-5072      TCGA-50-5930      TCGA-50-5931 
"OR5B3 WILD-TYPE" "OR5B3 WILD-TYPE" "OR5B3 WILD-TYPE" "OR5B3 WILD-TYPE" 
     TCGA-50-5932      TCGA-50-5933      TCGA-50-5935      TCGA-50-5936 
"OR5B3 WILD-TYPE" "OR5B3 WILD-TYPE" "OR5B3 WILD-TYPE" "OR5B3 WILD-TYPE" 
     TCGA-50-5939      TCGA-50-5941      TCGA-50-5942      TCGA-50-5944 
"OR5B3 WILD-TYPE" "OR5B3 WILD-TYPE" "OR5B3 WILD-TYPE" "OR5B3 WILD-TYPE" 
     TCGA-50-5946      TCGA-50-6590      TCGA-50-6591      TCGA-50-6592 
"OR5B3 WILD-TYPE" "OR5B3 WILD-TYPE" "OR5B3 WILD-TYPE" "OR5B3 WILD-TYPE" 
     TCGA-50-6593      TCGA-50-6594      TCGA-50-6595      TCGA-50-6597 
"OR5B3 WILD-TYPE" "OR5B3 WILD-TYPE" "OR5B3 WILD-TYPE" "OR5B3 WILD-TYPE" 
     TCGA-55-1592      TCGA-55-1594      TCGA-55-1595      TCGA-55-1596 
"OR5B3 WILD-TYPE" "OR5B3 WILD-TYPE" "OR5B3 WILD-TYPE" "OR5B3 WILD-TYPE" 
     TCGA-55-5899      TCGA-55-6543      TCGA-55-6642      TCGA-55-6712 
"OR5B3 WILD-TYPE" "OR5B3 WILD-TYPE" "OR5B3 WILD-TYPE" "OR5B3 WILD-TYPE" 
     TCGA-64-1676      TCGA-64-1677      TCGA-64-1678      TCGA-64-1680 
"OR5B3 WILD-TYPE" "OR5B3 WILD-TYPE" "OR5B3 WILD-TYPE" "OR5B3 WILD-TYPE" 
     TCGA-64-5774      TCGA-64-5775      TCGA-64-5778      TCGA-64-5779 
"OR5B3 WILD-TYPE" "OR5B3 WILD-TYPE" "OR5B3 WILD-TYPE" "OR5B3 WILD-TYPE" 
     TCGA-64-5781      TCGA-64-5815      TCGA-67-3770      TCGA-67-3771 
"OR5B3 WILD-TYPE" "OR5B3 WILD-TYPE" "OR5B3 WILD-TYPE" "OR5B3 WILD-TYPE" 
     TCGA-67-3772      TCGA-67-3773      TCGA-67-3774      TCGA-67-6215 
"OR5B3 WILD-TYPE" "OR5B3 WILD-TYPE" "OR5B3 WILD-TYPE" "OR5B3 WILD-TYPE" 
     TCGA-67-6216      TCGA-67-6217      TCGA-71-6725      TCGA-73-4658 
"OR5B3 WILD-TYPE" "OR5B3 WILD-TYPE" "OR5B3 WILD-TYPE" "OR5B3 WILD-TYPE" 
     TCGA-73-4659      TCGA-73-4662      TCGA-73-4666      TCGA-73-4668 
"OR5B3 WILD-TYPE" "OR5B3 WILD-TYPE"   "OR5B3 MUTATED" "OR5B3 WILD-TYPE" 
     TCGA-73-4670      TCGA-73-4675      TCGA-73-4676      TCGA-73-4677 
"OR5B3 WILD-TYPE" "OR5B3 WILD-TYPE" "OR5B3 WILD-TYPE"   "OR5B3 MUTATED" 
     TCGA-91-6828      TCGA-91-6829      TCGA-91-6831      TCGA-91-6835 
"OR5B3 WILD-TYPE" "OR5B3 WILD-TYPE" "OR5B3 WILD-TYPE" "OR5B3 WILD-TYPE" 
     TCGA-91-6836 
"OR5B3 WILD-TYPE" 
     TCGA-05-4249      TCGA-05-4250      TCGA-05-4382      TCGA-05-4384 
"OR5B3 WILD-TYPE" "OR5B3 WILD-TYPE" "OR5B3 WILD-TYPE" "OR5B3 WILD-TYPE" 
     TCGA-05-4390      TCGA-05-4396      TCGA-05-4397      TCGA-05-4398 
"OR5B3 WILD-TYPE" "OR5B3 WILD-TYPE" "OR5B3 WILD-TYPE" "OR5B3 WILD-TYPE" 
     TCGA-05-4402      TCGA-05-4405      TCGA-05-4415      TCGA-05-4417 
"OR5B3 WILD-TYPE" "OR5B3 WILD-TYPE" "OR5B3 WILD-TYPE" "OR5B3 WILD-TYPE" 
     TCGA-05-4418      TCGA-05-4420      TCGA-05-4424      TCGA-05-4426 
"OR5B3 WILD-TYPE" "OR5B3 WILD-TYPE" "OR5B3 WILD-TYPE" "OR5B3 WILD-TYPE" 
     TCGA-05-4427      TCGA-05-4430      TCGA-05-4432      TCGA-05-4433 
  "OR5B3 MUTATED" "OR5B3 WILD-TYPE" "OR5B3 WILD-TYPE" "OR5B3 WILD-TYPE" 
     TCGA-05-4434      TCGA-05-5420      TCGA-05-5423      TCGA-05-5425 
"OR5B3 WILD-TYPE" "OR5B3 WILD-TYPE" "OR5B3 WILD-TYPE" "OR5B3 WILD-TYPE" 
     TCGA-05-5429      TCGA-05-5715      TCGA-35-3615      TCGA-35-4122 
"OR5B3 WILD-TYPE" "OR5B3 WILD-TYPE"   "OR5B3 MUTATED" "OR5B3 WILD-TYPE" 
     TCGA-35-4123      TCGA-35-5375      TCGA-38-4625      TCGA-38-4626 
"OR5B3 WILD-TYPE" "OR5B3 WILD-TYPE" "OR5B3 WILD-TYPE" "OR5B3 WILD-TYPE" 
     TCGA-38-4627      TCGA-38-4628      TCGA-38-4629      TCGA-38-4630 
"OR5B3 WILD-TYPE" "OR5B3 WILD-TYPE"   "OR5B3 MUTATED" "OR5B3 WILD-TYPE" 
     TCGA-38-4631      TCGA-38-4632      TCGA-38-6178      TCGA-44-2655 
  "OR5B3 MUTATED" "OR5B3 WILD-TYPE" "OR5B3 WILD-TYPE" "OR5B3 WILD-TYPE" 
     TCGA-44-2656      TCGA-44-2657      TCGA-44-2659      TCGA-44-2661 
"OR5B3 WILD-TYPE"   "OR5B3 MUTATED" "OR5B3 WILD-TYPE" "OR5B3 WILD-TYPE" 
     TCGA-44-2662      TCGA-44-2665      TCGA-44-2666      TCGA-44-2668 
"OR5B3 WILD-TYPE" "OR5B3 WILD-TYPE" "OR5B3 WILD-TYPE" "OR5B3 WILD-TYPE" 
     TCGA-44-3396      TCGA-44-3398      TCGA-44-3918      TCGA-44-3919 
"OR5B3 WILD-TYPE" "OR5B3 WILD-TYPE" "OR5B3 WILD-TYPE" "OR5B3 WILD-TYPE" 
     TCGA-44-4112      TCGA-44-5643      TCGA-44-5645      TCGA-44-6144 
"OR5B3 WILD-TYPE" "OR5B3 WILD-TYPE" "OR5B3 WILD-TYPE" "OR5B3 WILD-TYPE" 
     TCGA-44-6145      TCGA-44-6146      TCGA-44-6147      TCGA-44-6148 
"OR5B3 WILD-TYPE" "OR5B3 WILD-TYPE" "OR5B3 WILD-TYPE" "OR5B3 WILD-TYPE" 
     TCGA-44-6774      TCGA-44-6775      TCGA-44-6776      TCGA-44-6777 
"OR5B3 WILD-TYPE" "OR5B3 WILD-TYPE" "OR5B3 WILD-TYPE" "OR5B3 WILD-TYPE" 
     TCGA-44-6778      TCGA-44-6779      TCGA-49-4486      TCGA-49-4487 
"OR5B3 WILD-TYPE" "OR5B3 WILD-TYPE" "OR5B3 WILD-TYPE" "OR5B3 WILD-TYPE" 
     TCGA-49-4488      TCGA-49-4490      TCGA-49-4494      TCGA-49-4501 
"OR5B3 WILD-TYPE" "OR5B3 WILD-TYPE" "OR5B3 WILD-TYPE" "OR5B3 WILD-TYPE" 
     TCGA-49-4505      TCGA-49-4506      TCGA-49-4507      TCGA-49-4510 
"OR5B3 WILD-TYPE" "OR5B3 WILD-TYPE" "OR5B3 WILD-TYPE" "OR5B3 WILD-TYPE" 
     TCGA-49-4512      TCGA-49-4514      TCGA-49-6742      TCGA-49-6743 
"OR5B3 WILD-TYPE" "OR5B3 WILD-TYPE" "OR5B3 WILD-TYPE" "OR5B3 WILD-TYPE" 
     TCGA-49-6744      TCGA-49-6745      TCGA-50-5044      TCGA-50-5045 
"OR5B3 WILD-TYPE" "OR5B3 WILD-TYPE" "OR5B3 WILD-TYPE" "OR5B3 WILD-TYPE" 
     TCGA-50-5049      TCGA-50-5051      TCGA-50-5055      TCGA-50-5066 
"OR5B3 WILD-TYPE" "OR5B3 WILD-TYPE" "OR5B3 WILD-TYPE" "OR5B3 WILD-TYPE" 
     TCGA-50-5068      TCGA-50-5072      TCGA-50-5930      TCGA-50-5931 
"OR5B3 WILD-TYPE" "OR5B3 WILD-TYPE" "OR5B3 WILD-TYPE" "OR5B3 WILD-TYPE" 
     TCGA-50-5932      TCGA-50-5933      TCGA-50-5935      TCGA-50-5936 
"OR5B3 WILD-TYPE" "OR5B3 WILD-TYPE" "OR5B3 WILD-TYPE" "OR5B3 WILD-TYPE" 
     TCGA-50-5939      TCGA-50-5941      TCGA-50-5942      TCGA-50-5944 
"OR5B3 WILD-TYPE" "OR5B3 WILD-TYPE" "OR5B3 WILD-TYPE" "OR5B3 WILD-TYPE" 
     TCGA-50-5946      TCGA-50-6590      TCGA-50-6591      TCGA-50-6592 
"OR5B3 WILD-TYPE" "OR5B3 WILD-TYPE" "OR5B3 WILD-TYPE" "OR5B3 WILD-TYPE" 
     TCGA-50-6593      TCGA-50-6594      TCGA-50-6595      TCGA-50-6597 
"OR5B3 WILD-TYPE" "OR5B3 WILD-TYPE" "OR5B3 WILD-TYPE" "OR5B3 WILD-TYPE" 
     TCGA-55-1592      TCGA-55-1594      TCGA-55-1595      TCGA-55-1596 
"OR5B3 WILD-TYPE" "OR5B3 WILD-TYPE" "OR5B3 WILD-TYPE" "OR5B3 WILD-TYPE" 
     TCGA-55-5899      TCGA-55-6543      TCGA-55-6642      TCGA-55-6712 
"OR5B3 WILD-TYPE" "OR5B3 WILD-TYPE" "OR5B3 WILD-TYPE" "OR5B3 WILD-TYPE" 
     TCGA-64-1676      TCGA-64-1677      TCGA-64-1678      TCGA-64-1680 
"OR5B3 WILD-TYPE" "OR5B3 WILD-TYPE" "OR5B3 WILD-TYPE" "OR5B3 WILD-TYPE" 
     TCGA-64-5774      TCGA-64-5775      TCGA-64-5778      TCGA-64-5779 
"OR5B3 WILD-TYPE" "OR5B3 WILD-TYPE" "OR5B3 WILD-TYPE" "OR5B3 WILD-TYPE" 
     TCGA-64-5781      TCGA-64-5815      TCGA-67-3770      TCGA-67-3771 
"OR5B3 WILD-TYPE" "OR5B3 WILD-TYPE" "OR5B3 WILD-TYPE" "OR5B3 WILD-TYPE" 
     TCGA-67-3772      TCGA-67-3773      TCGA-67-3774      TCGA-67-6215 
"OR5B3 WILD-TYPE" "OR5B3 WILD-TYPE" "OR5B3 WILD-TYPE" "OR5B3 WILD-TYPE" 
     TCGA-67-6216      TCGA-67-6217      TCGA-71-6725      TCGA-73-4658 
"OR5B3 WILD-TYPE" "OR5B3 WILD-TYPE" "OR5B3 WILD-TYPE" "OR5B3 WILD-TYPE" 
     TCGA-73-4659      TCGA-73-4662      TCGA-73-4666      TCGA-73-4668 
"OR5B3 WILD-TYPE" "OR5B3 WILD-TYPE"   "OR5B3 MUTATED" "OR5B3 WILD-TYPE" 
     TCGA-73-4670      TCGA-73-4675      TCGA-73-4676      TCGA-73-4677 
"OR5B3 WILD-TYPE" "OR5B3 WILD-TYPE" "OR5B3 WILD-TYPE"   "OR5B3 MUTATED" 
     TCGA-91-6828      TCGA-91-6829      TCGA-91-6831      TCGA-91-6835 
"OR5B3 WILD-TYPE" "OR5B3 WILD-TYPE" "OR5B3 WILD-TYPE" "OR5B3 WILD-TYPE" 
     TCGA-91-6836 
"OR5B3 WILD-TYPE" 
[1] "hr=" "2.3"
D123V2, continuous
D123V3, binary
[1] "tbl2"
                 cls
clus              [,1] [,2]
  OR5B3 MUTATED      4    3
  OR5B3 WILD-TYPE   89   76
        clus
vv       OR5B3 MUTATED OR5B3 WILD-TYPE
  FEMALE             4              89
  MALE               3              76
D123V4, continuous
[1] "Remove cluster labels:" "OR5B3 MUTATED"         
clus
  OR5B3 MUTATED OR5B3 WILD-TYPE 
              1              11 
     TCGA-35-4122      TCGA-35-4123      TCGA-35-5375      TCGA-64-1677 
"OR5B3 WILD-TYPE" "OR5B3 WILD-TYPE" "OR5B3 WILD-TYPE" "OR5B3 WILD-TYPE" 
     TCGA-64-5778      TCGA-71-6725      TCGA-73-4659      TCGA-73-4662 
"OR5B3 WILD-TYPE" "OR5B3 WILD-TYPE" "OR5B3 WILD-TYPE" "OR5B3 WILD-TYPE" 
     TCGA-73-4668      TCGA-73-4676      TCGA-75-5122 
"OR5B3 WILD-TYPE" "OR5B3 WILD-TYPE" "OR5B3 WILD-TYPE" 
D123V5, multiclass
D123V6, multiclass
    clus
vv   OR5B3 MUTATED OR5B3 WILD-TYPE
  T1             1              40
  T2             5             103
  T3             1              13
  T4             0               8
D123V7, multiclass
       clus
vv      OR5B3 MUTATED OR5B3 WILD-TYPE
  N0                5              90
  N1                1              36
  N2+N3             0              35
D123V8, multiclass
    clus
vv   OR5B3 MUTATED OR5B3 WILD-TYPE
  M0             6             131
  M1             1               8
  MX             0              22
D123V9, multiclass
     clus
vv    OR5B3 MUTATED OR5B3 WILD-TYPE
  I               4              84
  II              2              31
  III             0              39
  IV              1               8
D123V10, binary
[1] "tbl2"
                 cls
clus              [,1] [,2]
  OR5B3 MUTATED      1    6
  OR5B3 WILD-TYPE   15  150
     clus
vv    OR5B3 MUTATED OR5B3 WILD-TYPE
  NO              1              15
  YES             6             150
D123V11, continuous
D123V12, continuous
D123V13, multiclass
                                             clus
vv                                            OR5B3 MUTATED OR5B3 WILD-TYPE
  CURRENT REFORMED SMOKER FOR < OR = 15 YEARS             5              57
  CURRENT REFORMED SMOKER FOR > 15 YEARS                  1              45
  CURRENT SMOKER                                          0              28
  LIFELONG NON-SMOKER                                     1              23
D123V14, continuous

Clustering(124) Variable = SLITRK2 MUTATION ANALYSIS
D124V1, survival
                   sevent
clus2                0  1
  SLITRK2 MUTATED   11  7
  SLITRK2 WILD-TYPE 88 43
  SLITRK2 MUTATED SLITRK2 WILD-TYPE 
               18               131 
  SLITRK2 MUTATED SLITRK2 WILD-TYPE 
                7                43 
$`SLITRK2 MUTATED`
TCGA-05-4250 TCGA-05-4396 TCGA-05-4397 TCGA-05-4405 TCGA-05-4417 TCGA-05-4420 
        3.98         9.96        24.03        20.05        14.93        29.95 
TCGA-05-4430 TCGA-38-4626 TCGA-44-2657 TCGA-50-5066 TCGA-50-5933 TCGA-50-5941 
       25.02        85.32        13.15         9.76        77.88         9.37 
TCGA-55-1592 TCGA-55-6642 TCGA-64-1677 TCGA-64-5778 TCGA-67-6217 TCGA-91-6829 
       23.05        32.61        20.65        30.44        13.87        41.33 

$`SLITRK2 WILD-TYPE`
TCGA-05-4249 TCGA-05-4382 TCGA-05-4384 TCGA-05-4390 TCGA-05-4398 TCGA-05-4402 
       38.07        19.92        14.01        37.02        47.05         8.02 
TCGA-05-4415 TCGA-05-4418 TCGA-05-4424 TCGA-05-4426 TCGA-05-4427 TCGA-05-4432 
        2.96         8.98        30.02        26.01        26.01        25.02 
TCGA-05-4433 TCGA-05-4434 TCGA-05-5420 TCGA-05-5423 TCGA-05-5425 TCGA-05-5429 
       24.00        15.02         1.02         4.96         2.96         0.99 
TCGA-05-5715 TCGA-35-3615 TCGA-35-4122 TCGA-35-4123 TCGA-35-5375 TCGA-38-4625 
        2.04         0.46         7.36         5.95         8.68        47.61 
TCGA-38-4627 TCGA-38-4628 TCGA-38-4629 TCGA-38-4630 TCGA-38-4631 TCGA-38-4632 
       37.71        49.02        28.37        35.28        11.64        44.61 
TCGA-38-6178 TCGA-44-2655 TCGA-44-2656 TCGA-44-2659 TCGA-44-2661 TCGA-44-2662 
        5.19        18.87        19.10        17.39         3.39        15.78 
TCGA-44-2665 TCGA-44-2666 TCGA-44-2668 TCGA-44-3396 TCGA-44-3398 TCGA-44-3918 
       13.15         3.19         8.09        10.22         8.32         6.44 
TCGA-44-3919 TCGA-44-4112 TCGA-44-5643 TCGA-44-5645 TCGA-44-6144 TCGA-44-6145 
        6.21         4.60         3.48         6.84         0.30         3.35 
TCGA-44-6146 TCGA-44-6147 TCGA-44-6148 TCGA-44-6774 TCGA-44-6775 TCGA-44-6776 
        9.93         7.76         3.12         5.42         2.70        63.72 
TCGA-44-6777 TCGA-44-6778 TCGA-44-6779 TCGA-49-4486 TCGA-49-4487 TCGA-49-4488 
       32.45        36.49        16.41        76.21        28.11        28.57 
TCGA-49-4490 TCGA-49-4494 TCGA-49-4501 TCGA-49-4505 TCGA-49-4506 TCGA-49-4507 
       12.66        35.54        46.72        14.07        32.84         8.81 
TCGA-49-4510 TCGA-49-4512 TCGA-49-4514 TCGA-49-6742 TCGA-49-6743 TCGA-49-6744 
       29.46        29.75        43.20        15.02        12.13        12.99 
TCGA-49-6745 TCGA-50-5044 TCGA-50-5045 TCGA-50-5049 TCGA-50-5051 TCGA-50-5055 
        4.93        20.48        71.47        48.82        14.96        25.81 
TCGA-50-5068 TCGA-50-5072 TCGA-50-5930 TCGA-50-5931 TCGA-50-5932 TCGA-50-5935 
       49.28         8.05         9.27         8.78        35.87        21.47 
TCGA-50-5936 TCGA-50-5939 TCGA-50-5942 TCGA-50-5944 TCGA-50-5946 TCGA-50-6590 
        8.45        15.12         4.44        12.26        11.47        42.31 
TCGA-50-6591 TCGA-50-6592 TCGA-50-6593 TCGA-50-6594 TCGA-50-6595 TCGA-50-6597 
        3.88        25.51        11.05        12.16         6.21        33.37 
TCGA-55-1594 TCGA-55-1595 TCGA-55-1596 TCGA-55-5899 TCGA-55-6543 TCGA-55-6712 
       38.73        48.62        45.17         2.86         0.07         0.79 
TCGA-64-1676 TCGA-64-1678 TCGA-64-1680 TCGA-64-5774 TCGA-64-5775 TCGA-64-5779 
       56.81        39.09        37.02        83.84         0.10        16.67 
TCGA-64-5781 TCGA-64-5815 TCGA-67-3770 TCGA-67-3771 TCGA-67-3772 TCGA-67-3773 
       39.52         7.33         0.99         1.97         0.59         2.04 
TCGA-67-3774 TCGA-67-6215 TCGA-67-6216 TCGA-71-6725 TCGA-73-4658 TCGA-73-4659 
        0.59         0.89         0.69         2.01        52.57        23.38 
TCGA-73-4662 TCGA-73-4666 TCGA-73-4668 TCGA-73-4670 TCGA-73-4675 TCGA-73-4676 
       29.95        20.28        15.35         0.46         1.32         4.01 
TCGA-73-4677 TCGA-91-6828 TCGA-91-6831 TCGA-91-6835 TCGA-91-6836 
        1.25         1.22         1.28         1.15         0.36 

  SLITRK2 MUTATED SLITRK2 WILD-TYPE 
             3.98              0.07 
  SLITRK2 MUTATED SLITRK2 WILD-TYPE 
            85.32             83.84 
  SLITRK2 MUTATED SLITRK2 WILD-TYPE 
            21.85             12.26 
[1] "4.0 - 85.3 (21.9)" "0.1 - 83.8 (12.3)"
       TCGA-05-4249        TCGA-05-4250        TCGA-05-4382        TCGA-05-4384 
"SLITRK2 WILD-TYPE"   "SLITRK2 MUTATED" "SLITRK2 WILD-TYPE" "SLITRK2 WILD-TYPE" 
       TCGA-05-4390        TCGA-05-4396        TCGA-05-4397        TCGA-05-4398 
"SLITRK2 WILD-TYPE"   "SLITRK2 MUTATED"   "SLITRK2 MUTATED" "SLITRK2 WILD-TYPE" 
       TCGA-05-4402        TCGA-05-4405        TCGA-05-4415        TCGA-05-4417 
"SLITRK2 WILD-TYPE"   "SLITRK2 MUTATED" "SLITRK2 WILD-TYPE"   "SLITRK2 MUTATED" 
       TCGA-05-4418        TCGA-05-4420        TCGA-05-4424        TCGA-05-4426 
"SLITRK2 WILD-TYPE"   "SLITRK2 MUTATED" "SLITRK2 WILD-TYPE" "SLITRK2 WILD-TYPE" 
       TCGA-05-4427        TCGA-05-4430        TCGA-05-4432        TCGA-05-4433 
"SLITRK2 WILD-TYPE"   "SLITRK2 MUTATED" "SLITRK2 WILD-TYPE" "SLITRK2 WILD-TYPE" 
       TCGA-05-4434        TCGA-05-5420        TCGA-05-5423        TCGA-05-5425 
"SLITRK2 WILD-TYPE" "SLITRK2 WILD-TYPE" "SLITRK2 WILD-TYPE" "SLITRK2 WILD-TYPE" 
       TCGA-05-5429        TCGA-05-5715        TCGA-35-3615        TCGA-35-4122 
"SLITRK2 WILD-TYPE" "SLITRK2 WILD-TYPE" "SLITRK2 WILD-TYPE" "SLITRK2 WILD-TYPE" 
       TCGA-35-4123        TCGA-35-5375        TCGA-38-4625        TCGA-38-4626 
"SLITRK2 WILD-TYPE" "SLITRK2 WILD-TYPE" "SLITRK2 WILD-TYPE"   "SLITRK2 MUTATED" 
       TCGA-38-4627        TCGA-38-4628        TCGA-38-4629        TCGA-38-4630 
"SLITRK2 WILD-TYPE" "SLITRK2 WILD-TYPE" "SLITRK2 WILD-TYPE" "SLITRK2 WILD-TYPE" 
       TCGA-38-4631        TCGA-38-4632        TCGA-38-6178        TCGA-44-2655 
"SLITRK2 WILD-TYPE" "SLITRK2 WILD-TYPE" "SLITRK2 WILD-TYPE" "SLITRK2 WILD-TYPE" 
       TCGA-44-2656        TCGA-44-2657        TCGA-44-2659        TCGA-44-2661 
"SLITRK2 WILD-TYPE"   "SLITRK2 MUTATED" "SLITRK2 WILD-TYPE" "SLITRK2 WILD-TYPE" 
       TCGA-44-2662        TCGA-44-2665        TCGA-44-2666        TCGA-44-2668 
"SLITRK2 WILD-TYPE" "SLITRK2 WILD-TYPE" "SLITRK2 WILD-TYPE" "SLITRK2 WILD-TYPE" 
       TCGA-44-3396        TCGA-44-3398        TCGA-44-3918        TCGA-44-3919 
"SLITRK2 WILD-TYPE" "SLITRK2 WILD-TYPE" "SLITRK2 WILD-TYPE" "SLITRK2 WILD-TYPE" 
       TCGA-44-4112        TCGA-44-5643        TCGA-44-5645        TCGA-44-6144 
"SLITRK2 WILD-TYPE" "SLITRK2 WILD-TYPE" "SLITRK2 WILD-TYPE" "SLITRK2 WILD-TYPE" 
       TCGA-44-6145        TCGA-44-6146        TCGA-44-6147        TCGA-44-6148 
"SLITRK2 WILD-TYPE" "SLITRK2 WILD-TYPE" "SLITRK2 WILD-TYPE" "SLITRK2 WILD-TYPE" 
       TCGA-44-6774        TCGA-44-6775        TCGA-44-6776        TCGA-44-6777 
"SLITRK2 WILD-TYPE" "SLITRK2 WILD-TYPE" "SLITRK2 WILD-TYPE" "SLITRK2 WILD-TYPE" 
       TCGA-44-6778        TCGA-44-6779        TCGA-49-4486        TCGA-49-4487 
"SLITRK2 WILD-TYPE" "SLITRK2 WILD-TYPE" "SLITRK2 WILD-TYPE" "SLITRK2 WILD-TYPE" 
       TCGA-49-4488        TCGA-49-4490        TCGA-49-4494        TCGA-49-4501 
"SLITRK2 WILD-TYPE" "SLITRK2 WILD-TYPE" "SLITRK2 WILD-TYPE" "SLITRK2 WILD-TYPE" 
       TCGA-49-4505        TCGA-49-4506        TCGA-49-4507        TCGA-49-4510 
"SLITRK2 WILD-TYPE" "SLITRK2 WILD-TYPE" "SLITRK2 WILD-TYPE" "SLITRK2 WILD-TYPE" 
       TCGA-49-4512        TCGA-49-4514        TCGA-49-6742        TCGA-49-6743 
"SLITRK2 WILD-TYPE" "SLITRK2 WILD-TYPE" "SLITRK2 WILD-TYPE" "SLITRK2 WILD-TYPE" 
       TCGA-49-6744        TCGA-49-6745        TCGA-50-5044        TCGA-50-5045 
"SLITRK2 WILD-TYPE" "SLITRK2 WILD-TYPE" "SLITRK2 WILD-TYPE" "SLITRK2 WILD-TYPE" 
       TCGA-50-5049        TCGA-50-5051        TCGA-50-5055        TCGA-50-5066 
"SLITRK2 WILD-TYPE" "SLITRK2 WILD-TYPE" "SLITRK2 WILD-TYPE"   "SLITRK2 MUTATED" 
       TCGA-50-5068        TCGA-50-5072        TCGA-50-5930        TCGA-50-5931 
"SLITRK2 WILD-TYPE" "SLITRK2 WILD-TYPE" "SLITRK2 WILD-TYPE" "SLITRK2 WILD-TYPE" 
       TCGA-50-5932        TCGA-50-5933        TCGA-50-5935        TCGA-50-5936 
"SLITRK2 WILD-TYPE"   "SLITRK2 MUTATED" "SLITRK2 WILD-TYPE" "SLITRK2 WILD-TYPE" 
       TCGA-50-5939        TCGA-50-5941        TCGA-50-5942        TCGA-50-5944 
"SLITRK2 WILD-TYPE"   "SLITRK2 MUTATED" "SLITRK2 WILD-TYPE" "SLITRK2 WILD-TYPE" 
       TCGA-50-5946        TCGA-50-6590        TCGA-50-6591        TCGA-50-6592 
"SLITRK2 WILD-TYPE" "SLITRK2 WILD-TYPE" "SLITRK2 WILD-TYPE" "SLITRK2 WILD-TYPE" 
       TCGA-50-6593        TCGA-50-6594        TCGA-50-6595        TCGA-50-6597 
"SLITRK2 WILD-TYPE" "SLITRK2 WILD-TYPE" "SLITRK2 WILD-TYPE" "SLITRK2 WILD-TYPE" 
       TCGA-55-1592        TCGA-55-1594        TCGA-55-1595        TCGA-55-1596 
  "SLITRK2 MUTATED" "SLITRK2 WILD-TYPE" "SLITRK2 WILD-TYPE" "SLITRK2 WILD-TYPE" 
       TCGA-55-5899        TCGA-55-6543        TCGA-55-6642        TCGA-55-6712 
"SLITRK2 WILD-TYPE" "SLITRK2 WILD-TYPE"   "SLITRK2 MUTATED" "SLITRK2 WILD-TYPE" 
       TCGA-64-1676        TCGA-64-1677        TCGA-64-1678        TCGA-64-1680 
"SLITRK2 WILD-TYPE"   "SLITRK2 MUTATED" "SLITRK2 WILD-TYPE" "SLITRK2 WILD-TYPE" 
       TCGA-64-5774        TCGA-64-5775        TCGA-64-5778        TCGA-64-5779 
"SLITRK2 WILD-TYPE" "SLITRK2 WILD-TYPE"   "SLITRK2 MUTATED" "SLITRK2 WILD-TYPE" 
       TCGA-64-5781        TCGA-64-5815        TCGA-67-3770        TCGA-67-3771 
"SLITRK2 WILD-TYPE" "SLITRK2 WILD-TYPE" "SLITRK2 WILD-TYPE" "SLITRK2 WILD-TYPE" 
       TCGA-67-3772        TCGA-67-3773        TCGA-67-3774        TCGA-67-6215 
"SLITRK2 WILD-TYPE" "SLITRK2 WILD-TYPE" "SLITRK2 WILD-TYPE" "SLITRK2 WILD-TYPE" 
       TCGA-67-6216        TCGA-67-6217        TCGA-71-6725        TCGA-73-4658 
"SLITRK2 WILD-TYPE"   "SLITRK2 MUTATED" "SLITRK2 WILD-TYPE" "SLITRK2 WILD-TYPE" 
       TCGA-73-4659        TCGA-73-4662        TCGA-73-4666        TCGA-73-4668 
"SLITRK2 WILD-TYPE" "SLITRK2 WILD-TYPE" "SLITRK2 WILD-TYPE" "SLITRK2 WILD-TYPE" 
       TCGA-73-4670        TCGA-73-4675        TCGA-73-4676        TCGA-73-4677 
"SLITRK2 WILD-TYPE" "SLITRK2 WILD-TYPE" "SLITRK2 WILD-TYPE" "SLITRK2 WILD-TYPE" 
       TCGA-91-6828        TCGA-91-6829        TCGA-91-6831        TCGA-91-6835 
"SLITRK2 WILD-TYPE"   "SLITRK2 MUTATED" "SLITRK2 WILD-TYPE" "SLITRK2 WILD-TYPE" 
       TCGA-91-6836 
"SLITRK2 WILD-TYPE" 
       TCGA-05-4249        TCGA-05-4250        TCGA-05-4382        TCGA-05-4384 
"SLITRK2 WILD-TYPE"   "SLITRK2 MUTATED" "SLITRK2 WILD-TYPE" "SLITRK2 WILD-TYPE" 
       TCGA-05-4390        TCGA-05-4396        TCGA-05-4397        TCGA-05-4398 
"SLITRK2 WILD-TYPE"   "SLITRK2 MUTATED"   "SLITRK2 MUTATED" "SLITRK2 WILD-TYPE" 
       TCGA-05-4402        TCGA-05-4405        TCGA-05-4415        TCGA-05-4417 
"SLITRK2 WILD-TYPE"   "SLITRK2 MUTATED" "SLITRK2 WILD-TYPE"   "SLITRK2 MUTATED" 
       TCGA-05-4418        TCGA-05-4420        TCGA-05-4424        TCGA-05-4426 
"SLITRK2 WILD-TYPE"   "SLITRK2 MUTATED" "SLITRK2 WILD-TYPE" "SLITRK2 WILD-TYPE" 
       TCGA-05-4427        TCGA-05-4430        TCGA-05-4432        TCGA-05-4433 
"SLITRK2 WILD-TYPE"   "SLITRK2 MUTATED" "SLITRK2 WILD-TYPE" "SLITRK2 WILD-TYPE" 
       TCGA-05-4434        TCGA-05-5420        TCGA-05-5423        TCGA-05-5425 
"SLITRK2 WILD-TYPE" "SLITRK2 WILD-TYPE" "SLITRK2 WILD-TYPE" "SLITRK2 WILD-TYPE" 
       TCGA-05-5429        TCGA-05-5715        TCGA-35-3615        TCGA-35-4122 
"SLITRK2 WILD-TYPE" "SLITRK2 WILD-TYPE" "SLITRK2 WILD-TYPE" "SLITRK2 WILD-TYPE" 
       TCGA-35-4123        TCGA-35-5375        TCGA-38-4625        TCGA-38-4626 
"SLITRK2 WILD-TYPE" "SLITRK2 WILD-TYPE" "SLITRK2 WILD-TYPE"   "SLITRK2 MUTATED" 
       TCGA-38-4627        TCGA-38-4628        TCGA-38-4629        TCGA-38-4630 
"SLITRK2 WILD-TYPE" "SLITRK2 WILD-TYPE" "SLITRK2 WILD-TYPE" "SLITRK2 WILD-TYPE" 
       TCGA-38-4631        TCGA-38-4632        TCGA-38-6178        TCGA-44-2655 
"SLITRK2 WILD-TYPE" "SLITRK2 WILD-TYPE" "SLITRK2 WILD-TYPE" "SLITRK2 WILD-TYPE" 
       TCGA-44-2656        TCGA-44-2657        TCGA-44-2659        TCGA-44-2661 
"SLITRK2 WILD-TYPE"   "SLITRK2 MUTATED" "SLITRK2 WILD-TYPE" "SLITRK2 WILD-TYPE" 
       TCGA-44-2662        TCGA-44-2665        TCGA-44-2666        TCGA-44-2668 
"SLITRK2 WILD-TYPE" "SLITRK2 WILD-TYPE" "SLITRK2 WILD-TYPE" "SLITRK2 WILD-TYPE" 
       TCGA-44-3396        TCGA-44-3398        TCGA-44-3918        TCGA-44-3919 
"SLITRK2 WILD-TYPE" "SLITRK2 WILD-TYPE" "SLITRK2 WILD-TYPE" "SLITRK2 WILD-TYPE" 
       TCGA-44-4112        TCGA-44-5643        TCGA-44-5645        TCGA-44-6144 
"SLITRK2 WILD-TYPE" "SLITRK2 WILD-TYPE" "SLITRK2 WILD-TYPE" "SLITRK2 WILD-TYPE" 
       TCGA-44-6145        TCGA-44-6146        TCGA-44-6147        TCGA-44-6148 
"SLITRK2 WILD-TYPE" "SLITRK2 WILD-TYPE" "SLITRK2 WILD-TYPE" "SLITRK2 WILD-TYPE" 
       TCGA-44-6774        TCGA-44-6775        TCGA-44-6776        TCGA-44-6777 
"SLITRK2 WILD-TYPE" "SLITRK2 WILD-TYPE" "SLITRK2 WILD-TYPE" "SLITRK2 WILD-TYPE" 
       TCGA-44-6778        TCGA-44-6779        TCGA-49-4486        TCGA-49-4487 
"SLITRK2 WILD-TYPE" "SLITRK2 WILD-TYPE" "SLITRK2 WILD-TYPE" "SLITRK2 WILD-TYPE" 
       TCGA-49-4488        TCGA-49-4490        TCGA-49-4494        TCGA-49-4501 
"SLITRK2 WILD-TYPE" "SLITRK2 WILD-TYPE" "SLITRK2 WILD-TYPE" "SLITRK2 WILD-TYPE" 
       TCGA-49-4505        TCGA-49-4506        TCGA-49-4507        TCGA-49-4510 
"SLITRK2 WILD-TYPE" "SLITRK2 WILD-TYPE" "SLITRK2 WILD-TYPE" "SLITRK2 WILD-TYPE" 
       TCGA-49-4512        TCGA-49-4514        TCGA-49-6742        TCGA-49-6743 
"SLITRK2 WILD-TYPE" "SLITRK2 WILD-TYPE" "SLITRK2 WILD-TYPE" "SLITRK2 WILD-TYPE" 
       TCGA-49-6744        TCGA-49-6745        TCGA-50-5044        TCGA-50-5045 
"SLITRK2 WILD-TYPE" "SLITRK2 WILD-TYPE" "SLITRK2 WILD-TYPE" "SLITRK2 WILD-TYPE" 
       TCGA-50-5049        TCGA-50-5051        TCGA-50-5055        TCGA-50-5066 
"SLITRK2 WILD-TYPE" "SLITRK2 WILD-TYPE" "SLITRK2 WILD-TYPE"   "SLITRK2 MUTATED" 
       TCGA-50-5068        TCGA-50-5072        TCGA-50-5930        TCGA-50-5931 
"SLITRK2 WILD-TYPE" "SLITRK2 WILD-TYPE" "SLITRK2 WILD-TYPE" "SLITRK2 WILD-TYPE" 
       TCGA-50-5932        TCGA-50-5933        TCGA-50-5935        TCGA-50-5936 
"SLITRK2 WILD-TYPE"   "SLITRK2 MUTATED" "SLITRK2 WILD-TYPE" "SLITRK2 WILD-TYPE" 
       TCGA-50-5939        TCGA-50-5941        TCGA-50-5942        TCGA-50-5944 
"SLITRK2 WILD-TYPE"   "SLITRK2 MUTATED" "SLITRK2 WILD-TYPE" "SLITRK2 WILD-TYPE" 
       TCGA-50-5946        TCGA-50-6590        TCGA-50-6591        TCGA-50-6592 
"SLITRK2 WILD-TYPE" "SLITRK2 WILD-TYPE" "SLITRK2 WILD-TYPE" "SLITRK2 WILD-TYPE" 
       TCGA-50-6593        TCGA-50-6594        TCGA-50-6595        TCGA-50-6597 
"SLITRK2 WILD-TYPE" "SLITRK2 WILD-TYPE" "SLITRK2 WILD-TYPE" "SLITRK2 WILD-TYPE" 
       TCGA-55-1592        TCGA-55-1594        TCGA-55-1595        TCGA-55-1596 
  "SLITRK2 MUTATED" "SLITRK2 WILD-TYPE" "SLITRK2 WILD-TYPE" "SLITRK2 WILD-TYPE" 
       TCGA-55-5899        TCGA-55-6543        TCGA-55-6642        TCGA-55-6712 
"SLITRK2 WILD-TYPE" "SLITRK2 WILD-TYPE"   "SLITRK2 MUTATED" "SLITRK2 WILD-TYPE" 
       TCGA-64-1676        TCGA-64-1677        TCGA-64-1678        TCGA-64-1680 
"SLITRK2 WILD-TYPE"   "SLITRK2 MUTATED" "SLITRK2 WILD-TYPE" "SLITRK2 WILD-TYPE" 
       TCGA-64-5774        TCGA-64-5775        TCGA-64-5778        TCGA-64-5779 
"SLITRK2 WILD-TYPE" "SLITRK2 WILD-TYPE"   "SLITRK2 MUTATED" "SLITRK2 WILD-TYPE" 
       TCGA-64-5781        TCGA-64-5815        TCGA-67-3770        TCGA-67-3771 
"SLITRK2 WILD-TYPE" "SLITRK2 WILD-TYPE" "SLITRK2 WILD-TYPE" "SLITRK2 WILD-TYPE" 
       TCGA-67-3772        TCGA-67-3773        TCGA-67-3774        TCGA-67-6215 
"SLITRK2 WILD-TYPE" "SLITRK2 WILD-TYPE" "SLITRK2 WILD-TYPE" "SLITRK2 WILD-TYPE" 
       TCGA-67-6216        TCGA-67-6217        TCGA-71-6725        TCGA-73-4658 
"SLITRK2 WILD-TYPE"   "SLITRK2 MUTATED" "SLITRK2 WILD-TYPE" "SLITRK2 WILD-TYPE" 
       TCGA-73-4659        TCGA-73-4662        TCGA-73-4666        TCGA-73-4668 
"SLITRK2 WILD-TYPE" "SLITRK2 WILD-TYPE" "SLITRK2 WILD-TYPE" "SLITRK2 WILD-TYPE" 
       TCGA-73-4670        TCGA-73-4675        TCGA-73-4676        TCGA-73-4677 
"SLITRK2 WILD-TYPE" "SLITRK2 WILD-TYPE" "SLITRK2 WILD-TYPE" "SLITRK2 WILD-TYPE" 
       TCGA-91-6828        TCGA-91-6829        TCGA-91-6831        TCGA-91-6835 
"SLITRK2 WILD-TYPE"   "SLITRK2 MUTATED" "SLITRK2 WILD-TYPE" "SLITRK2 WILD-TYPE" 
       TCGA-91-6836 
"SLITRK2 WILD-TYPE" 
       TCGA-05-4249        TCGA-05-4250        TCGA-05-4382        TCGA-05-4384 
"SLITRK2 WILD-TYPE"   "SLITRK2 MUTATED" "SLITRK2 WILD-TYPE" "SLITRK2 WILD-TYPE" 
       TCGA-05-4390        TCGA-05-4396        TCGA-05-4397        TCGA-05-4398 
"SLITRK2 WILD-TYPE"   "SLITRK2 MUTATED"   "SLITRK2 MUTATED" "SLITRK2 WILD-TYPE" 
       TCGA-05-4402        TCGA-05-4405        TCGA-05-4415        TCGA-05-4417 
"SLITRK2 WILD-TYPE"   "SLITRK2 MUTATED" "SLITRK2 WILD-TYPE"   "SLITRK2 MUTATED" 
       TCGA-05-4418        TCGA-05-4420        TCGA-05-4424        TCGA-05-4426 
"SLITRK2 WILD-TYPE"   "SLITRK2 MUTATED" "SLITRK2 WILD-TYPE" "SLITRK2 WILD-TYPE" 
       TCGA-05-4427        TCGA-05-4430        TCGA-05-4432        TCGA-05-4433 
"SLITRK2 WILD-TYPE"   "SLITRK2 MUTATED" "SLITRK2 WILD-TYPE" "SLITRK2 WILD-TYPE" 
       TCGA-05-4434        TCGA-05-5420        TCGA-05-5423        TCGA-05-5425 
"SLITRK2 WILD-TYPE" "SLITRK2 WILD-TYPE" "SLITRK2 WILD-TYPE" "SLITRK2 WILD-TYPE" 
       TCGA-05-5429        TCGA-05-5715        TCGA-35-3615        TCGA-35-4122 
"SLITRK2 WILD-TYPE" "SLITRK2 WILD-TYPE" "SLITRK2 WILD-TYPE" "SLITRK2 WILD-TYPE" 
       TCGA-35-4123        TCGA-35-5375        TCGA-38-4625        TCGA-38-4626 
"SLITRK2 WILD-TYPE" "SLITRK2 WILD-TYPE" "SLITRK2 WILD-TYPE"   "SLITRK2 MUTATED" 
       TCGA-38-4627        TCGA-38-4628        TCGA-38-4629        TCGA-38-4630 
"SLITRK2 WILD-TYPE" "SLITRK2 WILD-TYPE" "SLITRK2 WILD-TYPE" "SLITRK2 WILD-TYPE" 
       TCGA-38-4631        TCGA-38-4632        TCGA-38-6178        TCGA-44-2655 
"SLITRK2 WILD-TYPE" "SLITRK2 WILD-TYPE" "SLITRK2 WILD-TYPE" "SLITRK2 WILD-TYPE" 
       TCGA-44-2656        TCGA-44-2657        TCGA-44-2659        TCGA-44-2661 
"SLITRK2 WILD-TYPE"   "SLITRK2 MUTATED" "SLITRK2 WILD-TYPE" "SLITRK2 WILD-TYPE" 
       TCGA-44-2662        TCGA-44-2665        TCGA-44-2666        TCGA-44-2668 
"SLITRK2 WILD-TYPE" "SLITRK2 WILD-TYPE" "SLITRK2 WILD-TYPE" "SLITRK2 WILD-TYPE" 
       TCGA-44-3396        TCGA-44-3398        TCGA-44-3918        TCGA-44-3919 
"SLITRK2 WILD-TYPE" "SLITRK2 WILD-TYPE" "SLITRK2 WILD-TYPE" "SLITRK2 WILD-TYPE" 
       TCGA-44-4112        TCGA-44-5643        TCGA-44-5645        TCGA-44-6144 
"SLITRK2 WILD-TYPE" "SLITRK2 WILD-TYPE" "SLITRK2 WILD-TYPE" "SLITRK2 WILD-TYPE" 
       TCGA-44-6145        TCGA-44-6146        TCGA-44-6147        TCGA-44-6148 
"SLITRK2 WILD-TYPE" "SLITRK2 WILD-TYPE" "SLITRK2 WILD-TYPE" "SLITRK2 WILD-TYPE" 
       TCGA-44-6774        TCGA-44-6775        TCGA-44-6776        TCGA-44-6777 
"SLITRK2 WILD-TYPE" "SLITRK2 WILD-TYPE" "SLITRK2 WILD-TYPE" "SLITRK2 WILD-TYPE" 
       TCGA-44-6778        TCGA-44-6779        TCGA-49-4486        TCGA-49-4487 
"SLITRK2 WILD-TYPE" "SLITRK2 WILD-TYPE" "SLITRK2 WILD-TYPE" "SLITRK2 WILD-TYPE" 
       TCGA-49-4488        TCGA-49-4490        TCGA-49-4494        TCGA-49-4501 
"SLITRK2 WILD-TYPE" "SLITRK2 WILD-TYPE" "SLITRK2 WILD-TYPE" "SLITRK2 WILD-TYPE" 
       TCGA-49-4505        TCGA-49-4506        TCGA-49-4507        TCGA-49-4510 
"SLITRK2 WILD-TYPE" "SLITRK2 WILD-TYPE" "SLITRK2 WILD-TYPE" "SLITRK2 WILD-TYPE" 
       TCGA-49-4512        TCGA-49-4514        TCGA-49-6742        TCGA-49-6743 
"SLITRK2 WILD-TYPE" "SLITRK2 WILD-TYPE" "SLITRK2 WILD-TYPE" "SLITRK2 WILD-TYPE" 
       TCGA-49-6744        TCGA-49-6745        TCGA-50-5044        TCGA-50-5045 
"SLITRK2 WILD-TYPE" "SLITRK2 WILD-TYPE" "SLITRK2 WILD-TYPE" "SLITRK2 WILD-TYPE" 
       TCGA-50-5049        TCGA-50-5051        TCGA-50-5055        TCGA-50-5066 
"SLITRK2 WILD-TYPE" "SLITRK2 WILD-TYPE" "SLITRK2 WILD-TYPE"   "SLITRK2 MUTATED" 
       TCGA-50-5068        TCGA-50-5072        TCGA-50-5930        TCGA-50-5931 
"SLITRK2 WILD-TYPE" "SLITRK2 WILD-TYPE" "SLITRK2 WILD-TYPE" "SLITRK2 WILD-TYPE" 
       TCGA-50-5932        TCGA-50-5933        TCGA-50-5935        TCGA-50-5936 
"SLITRK2 WILD-TYPE"   "SLITRK2 MUTATED" "SLITRK2 WILD-TYPE" "SLITRK2 WILD-TYPE" 
       TCGA-50-5939        TCGA-50-5941        TCGA-50-5942        TCGA-50-5944 
"SLITRK2 WILD-TYPE"   "SLITRK2 MUTATED" "SLITRK2 WILD-TYPE" "SLITRK2 WILD-TYPE" 
       TCGA-50-5946        TCGA-50-6590        TCGA-50-6591        TCGA-50-6592 
"SLITRK2 WILD-TYPE" "SLITRK2 WILD-TYPE" "SLITRK2 WILD-TYPE" "SLITRK2 WILD-TYPE" 
       TCGA-50-6593        TCGA-50-6594        TCGA-50-6595        TCGA-50-6597 
"SLITRK2 WILD-TYPE" "SLITRK2 WILD-TYPE" "SLITRK2 WILD-TYPE" "SLITRK2 WILD-TYPE" 
       TCGA-55-1592        TCGA-55-1594        TCGA-55-1595        TCGA-55-1596 
  "SLITRK2 MUTATED" "SLITRK2 WILD-TYPE" "SLITRK2 WILD-TYPE" "SLITRK2 WILD-TYPE" 
       TCGA-55-5899        TCGA-55-6543        TCGA-55-6642        TCGA-55-6712 
"SLITRK2 WILD-TYPE" "SLITRK2 WILD-TYPE"   "SLITRK2 MUTATED" "SLITRK2 WILD-TYPE" 
       TCGA-64-1676        TCGA-64-1677        TCGA-64-1678        TCGA-64-1680 
"SLITRK2 WILD-TYPE"   "SLITRK2 MUTATED" "SLITRK2 WILD-TYPE" "SLITRK2 WILD-TYPE" 
       TCGA-64-5774        TCGA-64-5775        TCGA-64-5778        TCGA-64-5779 
"SLITRK2 WILD-TYPE" "SLITRK2 WILD-TYPE"   "SLITRK2 MUTATED" "SLITRK2 WILD-TYPE" 
       TCGA-64-5781        TCGA-64-5815        TCGA-67-3770        TCGA-67-3771 
"SLITRK2 WILD-TYPE" "SLITRK2 WILD-TYPE" "SLITRK2 WILD-TYPE" "SLITRK2 WILD-TYPE" 
       TCGA-67-3772        TCGA-67-3773        TCGA-67-3774        TCGA-67-6215 
"SLITRK2 WILD-TYPE" "SLITRK2 WILD-TYPE" "SLITRK2 WILD-TYPE" "SLITRK2 WILD-TYPE" 
       TCGA-67-6216        TCGA-67-6217        TCGA-71-6725        TCGA-73-4658 
"SLITRK2 WILD-TYPE"   "SLITRK2 MUTATED" "SLITRK2 WILD-TYPE" "SLITRK2 WILD-TYPE" 
       TCGA-73-4659        TCGA-73-4662        TCGA-73-4666        TCGA-73-4668 
"SLITRK2 WILD-TYPE" "SLITRK2 WILD-TYPE" "SLITRK2 WILD-TYPE" "SLITRK2 WILD-TYPE" 
       TCGA-73-4670        TCGA-73-4675        TCGA-73-4676        TCGA-73-4677 
"SLITRK2 WILD-TYPE" "SLITRK2 WILD-TYPE" "SLITRK2 WILD-TYPE" "SLITRK2 WILD-TYPE" 
       TCGA-91-6828        TCGA-91-6829        TCGA-91-6831        TCGA-91-6835 
"SLITRK2 WILD-TYPE"   "SLITRK2 MUTATED" "SLITRK2 WILD-TYPE" "SLITRK2 WILD-TYPE" 
       TCGA-91-6836 
"SLITRK2 WILD-TYPE" 
[1] "hr=" "1.3"
D124V2, continuous
D124V3, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  SLITRK2 MUTATED      9   10
  SLITRK2 WILD-TYPE   84   69
        clus
vv       SLITRK2 MUTATED SLITRK2 WILD-TYPE
  FEMALE               9                84
  MALE                10                69
D124V4, continuous
[1] "Remove cluster labels:" "SLITRK2 MUTATED"       
clus
  SLITRK2 MUTATED SLITRK2 WILD-TYPE 
                2                10 
       TCGA-35-4122        TCGA-35-4123        TCGA-35-5375        TCGA-71-6725 
"SLITRK2 WILD-TYPE" "SLITRK2 WILD-TYPE" "SLITRK2 WILD-TYPE" "SLITRK2 WILD-TYPE" 
       TCGA-73-4659        TCGA-73-4662        TCGA-73-4666        TCGA-73-4668 
"SLITRK2 WILD-TYPE" "SLITRK2 WILD-TYPE" "SLITRK2 WILD-TYPE" "SLITRK2 WILD-TYPE" 
       TCGA-73-4676        TCGA-75-5122 
"SLITRK2 WILD-TYPE" "SLITRK2 WILD-TYPE" 
D124V5, multiclass
D124V6, multiclass
    clus
vv   SLITRK2 MUTATED SLITRK2 WILD-TYPE
  T1               0                41
  T2              16                92
  T3               1                13
  T4               2                 6
D124V7, multiclass
       clus
vv      SLITRK2 MUTATED SLITRK2 WILD-TYPE
  N0                 11                84
  N1                  4                33
  N2+N3               3                32
D124V8, multiclass
    clus
vv   SLITRK2 MUTATED SLITRK2 WILD-TYPE
  M0              17               120
  M1               0                 9
  MX               2                20
D124V9, multiclass
     clus
vv    SLITRK2 MUTATED SLITRK2 WILD-TYPE
  I                11                77
  II                3                30
  III               5                34
  IV                0                 9
D124V10, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  SLITRK2 MUTATED      1   18
  SLITRK2 WILD-TYPE   15  138
     clus
vv    SLITRK2 MUTATED SLITRK2 WILD-TYPE
  NO                1                15
  YES              18               138
D124V11, continuous
D124V12, continuous
D124V13, multiclass
                                             clus
vv                                            SLITRK2 MUTATED SLITRK2 WILD-TYPE
  CURRENT REFORMED SMOKER FOR < OR = 15 YEARS               9                53
  CURRENT REFORMED SMOKER FOR > 15 YEARS                    2                44
  CURRENT SMOKER                                            6                22
  LIFELONG NON-SMOKER                                       1                23
D124V14, continuous

Clustering(125) Variable = FAM48B1 MUTATION ANALYSIS
D125V1, survival
                   sevent
clus2                0  1
  FAM48B1 MUTATED    6  3
  FAM48B1 WILD-TYPE 93 47
  FAM48B1 MUTATED FAM48B1 WILD-TYPE 
                9               140 
  FAM48B1 MUTATED FAM48B1 WILD-TYPE 
                3                47 
$`FAM48B1 MUTATED`
TCGA-05-4427 TCGA-35-4123 TCGA-38-4628 TCGA-38-4631 TCGA-44-2657 TCGA-44-2661 
       26.01         5.95        49.02        11.64        13.15         3.39 
TCGA-50-5931 TCGA-64-1678 TCGA-73-4666 
        8.78        39.09        20.28 

$`FAM48B1 WILD-TYPE`
TCGA-05-4249 TCGA-05-4250 TCGA-05-4382 TCGA-05-4384 TCGA-05-4390 TCGA-05-4396 
       38.07         3.98        19.92        14.01        37.02         9.96 
TCGA-05-4397 TCGA-05-4398 TCGA-05-4402 TCGA-05-4405 TCGA-05-4415 TCGA-05-4417 
       24.03        47.05         8.02        20.05         2.96        14.93 
TCGA-05-4418 TCGA-05-4420 TCGA-05-4424 TCGA-05-4426 TCGA-05-4430 TCGA-05-4432 
        8.98        29.95        30.02        26.01        25.02        25.02 
TCGA-05-4433 TCGA-05-4434 TCGA-05-5420 TCGA-05-5423 TCGA-05-5425 TCGA-05-5429 
       24.00        15.02         1.02         4.96         2.96         0.99 
TCGA-05-5715 TCGA-35-3615 TCGA-35-4122 TCGA-35-5375 TCGA-38-4625 TCGA-38-4626 
        2.04         0.46         7.36         8.68        47.61        85.32 
TCGA-38-4627 TCGA-38-4629 TCGA-38-4630 TCGA-38-4632 TCGA-38-6178 TCGA-44-2655 
       37.71        28.37        35.28        44.61         5.19        18.87 
TCGA-44-2656 TCGA-44-2659 TCGA-44-2662 TCGA-44-2665 TCGA-44-2666 TCGA-44-2668 
       19.10        17.39        15.78        13.15         3.19         8.09 
TCGA-44-3396 TCGA-44-3398 TCGA-44-3918 TCGA-44-3919 TCGA-44-4112 TCGA-44-5643 
       10.22         8.32         6.44         6.21         4.60         3.48 
TCGA-44-5645 TCGA-44-6144 TCGA-44-6145 TCGA-44-6146 TCGA-44-6147 TCGA-44-6148 
        6.84         0.30         3.35         9.93         7.76         3.12 
TCGA-44-6774 TCGA-44-6775 TCGA-44-6776 TCGA-44-6777 TCGA-44-6778 TCGA-44-6779 
        5.42         2.70        63.72        32.45        36.49        16.41 
TCGA-49-4486 TCGA-49-4487 TCGA-49-4488 TCGA-49-4490 TCGA-49-4494 TCGA-49-4501 
       76.21        28.11        28.57        12.66        35.54        46.72 
TCGA-49-4505 TCGA-49-4506 TCGA-49-4507 TCGA-49-4510 TCGA-49-4512 TCGA-49-4514 
       14.07        32.84         8.81        29.46        29.75        43.20 
TCGA-49-6742 TCGA-49-6743 TCGA-49-6744 TCGA-49-6745 TCGA-50-5044 TCGA-50-5045 
       15.02        12.13        12.99         4.93        20.48        71.47 
TCGA-50-5049 TCGA-50-5051 TCGA-50-5055 TCGA-50-5066 TCGA-50-5068 TCGA-50-5072 
       48.82        14.96        25.81         9.76        49.28         8.05 
TCGA-50-5930 TCGA-50-5932 TCGA-50-5933 TCGA-50-5935 TCGA-50-5936 TCGA-50-5939 
        9.27        35.87        77.88        21.47         8.45        15.12 
TCGA-50-5941 TCGA-50-5942 TCGA-50-5944 TCGA-50-5946 TCGA-50-6590 TCGA-50-6591 
        9.37         4.44        12.26        11.47        42.31         3.88 
TCGA-50-6592 TCGA-50-6593 TCGA-50-6594 TCGA-50-6595 TCGA-50-6597 TCGA-55-1592 
       25.51        11.05        12.16         6.21        33.37        23.05 
TCGA-55-1594 TCGA-55-1595 TCGA-55-1596 TCGA-55-5899 TCGA-55-6543 TCGA-55-6642 
       38.73        48.62        45.17         2.86         0.07        32.61 
TCGA-55-6712 TCGA-64-1676 TCGA-64-1677 TCGA-64-1680 TCGA-64-5774 TCGA-64-5775 
        0.79        56.81        20.65        37.02        83.84         0.10 
TCGA-64-5778 TCGA-64-5779 TCGA-64-5781 TCGA-64-5815 TCGA-67-3770 TCGA-67-3771 
       30.44        16.67        39.52         7.33         0.99         1.97 
TCGA-67-3772 TCGA-67-3773 TCGA-67-3774 TCGA-67-6215 TCGA-67-6216 TCGA-67-6217 
        0.59         2.04         0.59         0.89         0.69        13.87 
TCGA-71-6725 TCGA-73-4658 TCGA-73-4659 TCGA-73-4662 TCGA-73-4668 TCGA-73-4670 
        2.01        52.57        23.38        29.95        15.35         0.46 
TCGA-73-4675 TCGA-73-4676 TCGA-73-4677 TCGA-91-6828 TCGA-91-6829 TCGA-91-6831 
        1.32         4.01         1.25         1.22        41.33         1.28 
TCGA-91-6835 TCGA-91-6836 
        1.15         0.36 

  FAM48B1 MUTATED FAM48B1 WILD-TYPE 
             3.39              0.07 
  FAM48B1 MUTATED FAM48B1 WILD-TYPE 
            49.02             85.32 
  FAM48B1 MUTATED FAM48B1 WILD-TYPE 
            13.15             13.94 
[1] "3.4 - 49.0 (13.2)" "0.1 - 85.3 (13.9)"
       TCGA-05-4249        TCGA-05-4250        TCGA-05-4382        TCGA-05-4384 
"FAM48B1 WILD-TYPE" "FAM48B1 WILD-TYPE" "FAM48B1 WILD-TYPE" "FAM48B1 WILD-TYPE" 
       TCGA-05-4390        TCGA-05-4396        TCGA-05-4397        TCGA-05-4398 
"FAM48B1 WILD-TYPE" "FAM48B1 WILD-TYPE" "FAM48B1 WILD-TYPE" "FAM48B1 WILD-TYPE" 
       TCGA-05-4402        TCGA-05-4405        TCGA-05-4415        TCGA-05-4417 
"FAM48B1 WILD-TYPE" "FAM48B1 WILD-TYPE" "FAM48B1 WILD-TYPE" "FAM48B1 WILD-TYPE" 
       TCGA-05-4418        TCGA-05-4420        TCGA-05-4424        TCGA-05-4426 
"FAM48B1 WILD-TYPE" "FAM48B1 WILD-TYPE" "FAM48B1 WILD-TYPE" "FAM48B1 WILD-TYPE" 
       TCGA-05-4427        TCGA-05-4430        TCGA-05-4432        TCGA-05-4433 
  "FAM48B1 MUTATED" "FAM48B1 WILD-TYPE" "FAM48B1 WILD-TYPE" "FAM48B1 WILD-TYPE" 
       TCGA-05-4434        TCGA-05-5420        TCGA-05-5423        TCGA-05-5425 
"FAM48B1 WILD-TYPE" "FAM48B1 WILD-TYPE" "FAM48B1 WILD-TYPE" "FAM48B1 WILD-TYPE" 
       TCGA-05-5429        TCGA-05-5715        TCGA-35-3615        TCGA-35-4122 
"FAM48B1 WILD-TYPE" "FAM48B1 WILD-TYPE" "FAM48B1 WILD-TYPE" "FAM48B1 WILD-TYPE" 
       TCGA-35-4123        TCGA-35-5375        TCGA-38-4625        TCGA-38-4626 
  "FAM48B1 MUTATED" "FAM48B1 WILD-TYPE" "FAM48B1 WILD-TYPE" "FAM48B1 WILD-TYPE" 
       TCGA-38-4627        TCGA-38-4628        TCGA-38-4629        TCGA-38-4630 
"FAM48B1 WILD-TYPE"   "FAM48B1 MUTATED" "FAM48B1 WILD-TYPE" "FAM48B1 WILD-TYPE" 
       TCGA-38-4631        TCGA-38-4632        TCGA-38-6178        TCGA-44-2655 
  "FAM48B1 MUTATED" "FAM48B1 WILD-TYPE" "FAM48B1 WILD-TYPE" "FAM48B1 WILD-TYPE" 
       TCGA-44-2656        TCGA-44-2657        TCGA-44-2659        TCGA-44-2661 
"FAM48B1 WILD-TYPE"   "FAM48B1 MUTATED" "FAM48B1 WILD-TYPE"   "FAM48B1 MUTATED" 
       TCGA-44-2662        TCGA-44-2665        TCGA-44-2666        TCGA-44-2668 
"FAM48B1 WILD-TYPE" "FAM48B1 WILD-TYPE" "FAM48B1 WILD-TYPE" "FAM48B1 WILD-TYPE" 
       TCGA-44-3396        TCGA-44-3398        TCGA-44-3918        TCGA-44-3919 
"FAM48B1 WILD-TYPE" "FAM48B1 WILD-TYPE" "FAM48B1 WILD-TYPE" "FAM48B1 WILD-TYPE" 
       TCGA-44-4112        TCGA-44-5643        TCGA-44-5645        TCGA-44-6144 
"FAM48B1 WILD-TYPE" "FAM48B1 WILD-TYPE" "FAM48B1 WILD-TYPE" "FAM48B1 WILD-TYPE" 
       TCGA-44-6145        TCGA-44-6146        TCGA-44-6147        TCGA-44-6148 
"FAM48B1 WILD-TYPE" "FAM48B1 WILD-TYPE" "FAM48B1 WILD-TYPE" "FAM48B1 WILD-TYPE" 
       TCGA-44-6774        TCGA-44-6775        TCGA-44-6776        TCGA-44-6777 
"FAM48B1 WILD-TYPE" "FAM48B1 WILD-TYPE" "FAM48B1 WILD-TYPE" "FAM48B1 WILD-TYPE" 
       TCGA-44-6778        TCGA-44-6779        TCGA-49-4486        TCGA-49-4487 
"FAM48B1 WILD-TYPE" "FAM48B1 WILD-TYPE" "FAM48B1 WILD-TYPE" "FAM48B1 WILD-TYPE" 
       TCGA-49-4488        TCGA-49-4490        TCGA-49-4494        TCGA-49-4501 
"FAM48B1 WILD-TYPE" "FAM48B1 WILD-TYPE" "FAM48B1 WILD-TYPE" "FAM48B1 WILD-TYPE" 
       TCGA-49-4505        TCGA-49-4506        TCGA-49-4507        TCGA-49-4510 
"FAM48B1 WILD-TYPE" "FAM48B1 WILD-TYPE" "FAM48B1 WILD-TYPE" "FAM48B1 WILD-TYPE" 
       TCGA-49-4512        TCGA-49-4514        TCGA-49-6742        TCGA-49-6743 
"FAM48B1 WILD-TYPE" "FAM48B1 WILD-TYPE" "FAM48B1 WILD-TYPE" "FAM48B1 WILD-TYPE" 
       TCGA-49-6744        TCGA-49-6745        TCGA-50-5044        TCGA-50-5045 
"FAM48B1 WILD-TYPE" "FAM48B1 WILD-TYPE" "FAM48B1 WILD-TYPE" "FAM48B1 WILD-TYPE" 
       TCGA-50-5049        TCGA-50-5051        TCGA-50-5055        TCGA-50-5066 
"FAM48B1 WILD-TYPE" "FAM48B1 WILD-TYPE" "FAM48B1 WILD-TYPE" "FAM48B1 WILD-TYPE" 
       TCGA-50-5068        TCGA-50-5072        TCGA-50-5930        TCGA-50-5931 
"FAM48B1 WILD-TYPE" "FAM48B1 WILD-TYPE" "FAM48B1 WILD-TYPE"   "FAM48B1 MUTATED" 
       TCGA-50-5932        TCGA-50-5933        TCGA-50-5935        TCGA-50-5936 
"FAM48B1 WILD-TYPE" "FAM48B1 WILD-TYPE" "FAM48B1 WILD-TYPE" "FAM48B1 WILD-TYPE" 
       TCGA-50-5939        TCGA-50-5941        TCGA-50-5942        TCGA-50-5944 
"FAM48B1 WILD-TYPE" "FAM48B1 WILD-TYPE" "FAM48B1 WILD-TYPE" "FAM48B1 WILD-TYPE" 
       TCGA-50-5946        TCGA-50-6590        TCGA-50-6591        TCGA-50-6592 
"FAM48B1 WILD-TYPE" "FAM48B1 WILD-TYPE" "FAM48B1 WILD-TYPE" "FAM48B1 WILD-TYPE" 
       TCGA-50-6593        TCGA-50-6594        TCGA-50-6595        TCGA-50-6597 
"FAM48B1 WILD-TYPE" "FAM48B1 WILD-TYPE" "FAM48B1 WILD-TYPE" "FAM48B1 WILD-TYPE" 
       TCGA-55-1592        TCGA-55-1594        TCGA-55-1595        TCGA-55-1596 
"FAM48B1 WILD-TYPE" "FAM48B1 WILD-TYPE" "FAM48B1 WILD-TYPE" "FAM48B1 WILD-TYPE" 
       TCGA-55-5899        TCGA-55-6543        TCGA-55-6642        TCGA-55-6712 
"FAM48B1 WILD-TYPE" "FAM48B1 WILD-TYPE" "FAM48B1 WILD-TYPE" "FAM48B1 WILD-TYPE" 
       TCGA-64-1676        TCGA-64-1677        TCGA-64-1678        TCGA-64-1680 
"FAM48B1 WILD-TYPE" "FAM48B1 WILD-TYPE"   "FAM48B1 MUTATED" "FAM48B1 WILD-TYPE" 
       TCGA-64-5774        TCGA-64-5775        TCGA-64-5778        TCGA-64-5779 
"FAM48B1 WILD-TYPE" "FAM48B1 WILD-TYPE" "FAM48B1 WILD-TYPE" "FAM48B1 WILD-TYPE" 
       TCGA-64-5781        TCGA-64-5815        TCGA-67-3770        TCGA-67-3771 
"FAM48B1 WILD-TYPE" "FAM48B1 WILD-TYPE" "FAM48B1 WILD-TYPE" "FAM48B1 WILD-TYPE" 
       TCGA-67-3772        TCGA-67-3773        TCGA-67-3774        TCGA-67-6215 
"FAM48B1 WILD-TYPE" "FAM48B1 WILD-TYPE" "FAM48B1 WILD-TYPE" "FAM48B1 WILD-TYPE" 
       TCGA-67-6216        TCGA-67-6217        TCGA-71-6725        TCGA-73-4658 
"FAM48B1 WILD-TYPE" "FAM48B1 WILD-TYPE" "FAM48B1 WILD-TYPE" "FAM48B1 WILD-TYPE" 
       TCGA-73-4659        TCGA-73-4662        TCGA-73-4666        TCGA-73-4668 
"FAM48B1 WILD-TYPE" "FAM48B1 WILD-TYPE"   "FAM48B1 MUTATED" "FAM48B1 WILD-TYPE" 
       TCGA-73-4670        TCGA-73-4675        TCGA-73-4676        TCGA-73-4677 
"FAM48B1 WILD-TYPE" "FAM48B1 WILD-TYPE" "FAM48B1 WILD-TYPE" "FAM48B1 WILD-TYPE" 
       TCGA-91-6828        TCGA-91-6829        TCGA-91-6831        TCGA-91-6835 
"FAM48B1 WILD-TYPE" "FAM48B1 WILD-TYPE" "FAM48B1 WILD-TYPE" "FAM48B1 WILD-TYPE" 
       TCGA-91-6836 
"FAM48B1 WILD-TYPE" 
       TCGA-05-4249        TCGA-05-4250        TCGA-05-4382        TCGA-05-4384 
"FAM48B1 WILD-TYPE" "FAM48B1 WILD-TYPE" "FAM48B1 WILD-TYPE" "FAM48B1 WILD-TYPE" 
       TCGA-05-4390        TCGA-05-4396        TCGA-05-4397        TCGA-05-4398 
"FAM48B1 WILD-TYPE" "FAM48B1 WILD-TYPE" "FAM48B1 WILD-TYPE" "FAM48B1 WILD-TYPE" 
       TCGA-05-4402        TCGA-05-4405        TCGA-05-4415        TCGA-05-4417 
"FAM48B1 WILD-TYPE" "FAM48B1 WILD-TYPE" "FAM48B1 WILD-TYPE" "FAM48B1 WILD-TYPE" 
       TCGA-05-4418        TCGA-05-4420        TCGA-05-4424        TCGA-05-4426 
"FAM48B1 WILD-TYPE" "FAM48B1 WILD-TYPE" "FAM48B1 WILD-TYPE" "FAM48B1 WILD-TYPE" 
       TCGA-05-4427        TCGA-05-4430        TCGA-05-4432        TCGA-05-4433 
  "FAM48B1 MUTATED" "FAM48B1 WILD-TYPE" "FAM48B1 WILD-TYPE" "FAM48B1 WILD-TYPE" 
       TCGA-05-4434        TCGA-05-5420        TCGA-05-5423        TCGA-05-5425 
"FAM48B1 WILD-TYPE" "FAM48B1 WILD-TYPE" "FAM48B1 WILD-TYPE" "FAM48B1 WILD-TYPE" 
       TCGA-05-5429        TCGA-05-5715        TCGA-35-3615        TCGA-35-4122 
"FAM48B1 WILD-TYPE" "FAM48B1 WILD-TYPE" "FAM48B1 WILD-TYPE" "FAM48B1 WILD-TYPE" 
       TCGA-35-4123        TCGA-35-5375        TCGA-38-4625        TCGA-38-4626 
  "FAM48B1 MUTATED" "FAM48B1 WILD-TYPE" "FAM48B1 WILD-TYPE" "FAM48B1 WILD-TYPE" 
       TCGA-38-4627        TCGA-38-4628        TCGA-38-4629        TCGA-38-4630 
"FAM48B1 WILD-TYPE"   "FAM48B1 MUTATED" "FAM48B1 WILD-TYPE" "FAM48B1 WILD-TYPE" 
       TCGA-38-4631        TCGA-38-4632        TCGA-38-6178        TCGA-44-2655 
  "FAM48B1 MUTATED" "FAM48B1 WILD-TYPE" "FAM48B1 WILD-TYPE" "FAM48B1 WILD-TYPE" 
       TCGA-44-2656        TCGA-44-2657        TCGA-44-2659        TCGA-44-2661 
"FAM48B1 WILD-TYPE"   "FAM48B1 MUTATED" "FAM48B1 WILD-TYPE"   "FAM48B1 MUTATED" 
       TCGA-44-2662        TCGA-44-2665        TCGA-44-2666        TCGA-44-2668 
"FAM48B1 WILD-TYPE" "FAM48B1 WILD-TYPE" "FAM48B1 WILD-TYPE" "FAM48B1 WILD-TYPE" 
       TCGA-44-3396        TCGA-44-3398        TCGA-44-3918        TCGA-44-3919 
"FAM48B1 WILD-TYPE" "FAM48B1 WILD-TYPE" "FAM48B1 WILD-TYPE" "FAM48B1 WILD-TYPE" 
       TCGA-44-4112        TCGA-44-5643        TCGA-44-5645        TCGA-44-6144 
"FAM48B1 WILD-TYPE" "FAM48B1 WILD-TYPE" "FAM48B1 WILD-TYPE" "FAM48B1 WILD-TYPE" 
       TCGA-44-6145        TCGA-44-6146        TCGA-44-6147        TCGA-44-6148 
"FAM48B1 WILD-TYPE" "FAM48B1 WILD-TYPE" "FAM48B1 WILD-TYPE" "FAM48B1 WILD-TYPE" 
       TCGA-44-6774        TCGA-44-6775        TCGA-44-6776        TCGA-44-6777 
"FAM48B1 WILD-TYPE" "FAM48B1 WILD-TYPE" "FAM48B1 WILD-TYPE" "FAM48B1 WILD-TYPE" 
       TCGA-44-6778        TCGA-44-6779        TCGA-49-4486        TCGA-49-4487 
"FAM48B1 WILD-TYPE" "FAM48B1 WILD-TYPE" "FAM48B1 WILD-TYPE" "FAM48B1 WILD-TYPE" 
       TCGA-49-4488        TCGA-49-4490        TCGA-49-4494        TCGA-49-4501 
"FAM48B1 WILD-TYPE" "FAM48B1 WILD-TYPE" "FAM48B1 WILD-TYPE" "FAM48B1 WILD-TYPE" 
       TCGA-49-4505        TCGA-49-4506        TCGA-49-4507        TCGA-49-4510 
"FAM48B1 WILD-TYPE" "FAM48B1 WILD-TYPE" "FAM48B1 WILD-TYPE" "FAM48B1 WILD-TYPE" 
       TCGA-49-4512        TCGA-49-4514        TCGA-49-6742        TCGA-49-6743 
"FAM48B1 WILD-TYPE" "FAM48B1 WILD-TYPE" "FAM48B1 WILD-TYPE" "FAM48B1 WILD-TYPE" 
       TCGA-49-6744        TCGA-49-6745        TCGA-50-5044        TCGA-50-5045 
"FAM48B1 WILD-TYPE" "FAM48B1 WILD-TYPE" "FAM48B1 WILD-TYPE" "FAM48B1 WILD-TYPE" 
       TCGA-50-5049        TCGA-50-5051        TCGA-50-5055        TCGA-50-5066 
"FAM48B1 WILD-TYPE" "FAM48B1 WILD-TYPE" "FAM48B1 WILD-TYPE" "FAM48B1 WILD-TYPE" 
       TCGA-50-5068        TCGA-50-5072        TCGA-50-5930        TCGA-50-5931 
"FAM48B1 WILD-TYPE" "FAM48B1 WILD-TYPE" "FAM48B1 WILD-TYPE"   "FAM48B1 MUTATED" 
       TCGA-50-5932        TCGA-50-5933        TCGA-50-5935        TCGA-50-5936 
"FAM48B1 WILD-TYPE" "FAM48B1 WILD-TYPE" "FAM48B1 WILD-TYPE" "FAM48B1 WILD-TYPE" 
       TCGA-50-5939        TCGA-50-5941        TCGA-50-5942        TCGA-50-5944 
"FAM48B1 WILD-TYPE" "FAM48B1 WILD-TYPE" "FAM48B1 WILD-TYPE" "FAM48B1 WILD-TYPE" 
       TCGA-50-5946        TCGA-50-6590        TCGA-50-6591        TCGA-50-6592 
"FAM48B1 WILD-TYPE" "FAM48B1 WILD-TYPE" "FAM48B1 WILD-TYPE" "FAM48B1 WILD-TYPE" 
       TCGA-50-6593        TCGA-50-6594        TCGA-50-6595        TCGA-50-6597 
"FAM48B1 WILD-TYPE" "FAM48B1 WILD-TYPE" "FAM48B1 WILD-TYPE" "FAM48B1 WILD-TYPE" 
       TCGA-55-1592        TCGA-55-1594        TCGA-55-1595        TCGA-55-1596 
"FAM48B1 WILD-TYPE" "FAM48B1 WILD-TYPE" "FAM48B1 WILD-TYPE" "FAM48B1 WILD-TYPE" 
       TCGA-55-5899        TCGA-55-6543        TCGA-55-6642        TCGA-55-6712 
"FAM48B1 WILD-TYPE" "FAM48B1 WILD-TYPE" "FAM48B1 WILD-TYPE" "FAM48B1 WILD-TYPE" 
       TCGA-64-1676        TCGA-64-1677        TCGA-64-1678        TCGA-64-1680 
"FAM48B1 WILD-TYPE" "FAM48B1 WILD-TYPE"   "FAM48B1 MUTATED" "FAM48B1 WILD-TYPE" 
       TCGA-64-5774        TCGA-64-5775        TCGA-64-5778        TCGA-64-5779 
"FAM48B1 WILD-TYPE" "FAM48B1 WILD-TYPE" "FAM48B1 WILD-TYPE" "FAM48B1 WILD-TYPE" 
       TCGA-64-5781        TCGA-64-5815        TCGA-67-3770        TCGA-67-3771 
"FAM48B1 WILD-TYPE" "FAM48B1 WILD-TYPE" "FAM48B1 WILD-TYPE" "FAM48B1 WILD-TYPE" 
       TCGA-67-3772        TCGA-67-3773        TCGA-67-3774        TCGA-67-6215 
"FAM48B1 WILD-TYPE" "FAM48B1 WILD-TYPE" "FAM48B1 WILD-TYPE" "FAM48B1 WILD-TYPE" 
       TCGA-67-6216        TCGA-67-6217        TCGA-71-6725        TCGA-73-4658 
"FAM48B1 WILD-TYPE" "FAM48B1 WILD-TYPE" "FAM48B1 WILD-TYPE" "FAM48B1 WILD-TYPE" 
       TCGA-73-4659        TCGA-73-4662        TCGA-73-4666        TCGA-73-4668 
"FAM48B1 WILD-TYPE" "FAM48B1 WILD-TYPE"   "FAM48B1 MUTATED" "FAM48B1 WILD-TYPE" 
       TCGA-73-4670        TCGA-73-4675        TCGA-73-4676        TCGA-73-4677 
"FAM48B1 WILD-TYPE" "FAM48B1 WILD-TYPE" "FAM48B1 WILD-TYPE" "FAM48B1 WILD-TYPE" 
       TCGA-91-6828        TCGA-91-6829        TCGA-91-6831        TCGA-91-6835 
"FAM48B1 WILD-TYPE" "FAM48B1 WILD-TYPE" "FAM48B1 WILD-TYPE" "FAM48B1 WILD-TYPE" 
       TCGA-91-6836 
"FAM48B1 WILD-TYPE" 
       TCGA-05-4249        TCGA-05-4250        TCGA-05-4382        TCGA-05-4384 
"FAM48B1 WILD-TYPE" "FAM48B1 WILD-TYPE" "FAM48B1 WILD-TYPE" "FAM48B1 WILD-TYPE" 
       TCGA-05-4390        TCGA-05-4396        TCGA-05-4397        TCGA-05-4398 
"FAM48B1 WILD-TYPE" "FAM48B1 WILD-TYPE" "FAM48B1 WILD-TYPE" "FAM48B1 WILD-TYPE" 
       TCGA-05-4402        TCGA-05-4405        TCGA-05-4415        TCGA-05-4417 
"FAM48B1 WILD-TYPE" "FAM48B1 WILD-TYPE" "FAM48B1 WILD-TYPE" "FAM48B1 WILD-TYPE" 
       TCGA-05-4418        TCGA-05-4420        TCGA-05-4424        TCGA-05-4426 
"FAM48B1 WILD-TYPE" "FAM48B1 WILD-TYPE" "FAM48B1 WILD-TYPE" "FAM48B1 WILD-TYPE" 
       TCGA-05-4427        TCGA-05-4430        TCGA-05-4432        TCGA-05-4433 
  "FAM48B1 MUTATED" "FAM48B1 WILD-TYPE" "FAM48B1 WILD-TYPE" "FAM48B1 WILD-TYPE" 
       TCGA-05-4434        TCGA-05-5420        TCGA-05-5423        TCGA-05-5425 
"FAM48B1 WILD-TYPE" "FAM48B1 WILD-TYPE" "FAM48B1 WILD-TYPE" "FAM48B1 WILD-TYPE" 
       TCGA-05-5429        TCGA-05-5715        TCGA-35-3615        TCGA-35-4122 
"FAM48B1 WILD-TYPE" "FAM48B1 WILD-TYPE" "FAM48B1 WILD-TYPE" "FAM48B1 WILD-TYPE" 
       TCGA-35-4123        TCGA-35-5375        TCGA-38-4625        TCGA-38-4626 
  "FAM48B1 MUTATED" "FAM48B1 WILD-TYPE" "FAM48B1 WILD-TYPE" "FAM48B1 WILD-TYPE" 
       TCGA-38-4627        TCGA-38-4628        TCGA-38-4629        TCGA-38-4630 
"FAM48B1 WILD-TYPE"   "FAM48B1 MUTATED" "FAM48B1 WILD-TYPE" "FAM48B1 WILD-TYPE" 
       TCGA-38-4631        TCGA-38-4632        TCGA-38-6178        TCGA-44-2655 
  "FAM48B1 MUTATED" "FAM48B1 WILD-TYPE" "FAM48B1 WILD-TYPE" "FAM48B1 WILD-TYPE" 
       TCGA-44-2656        TCGA-44-2657        TCGA-44-2659        TCGA-44-2661 
"FAM48B1 WILD-TYPE"   "FAM48B1 MUTATED" "FAM48B1 WILD-TYPE"   "FAM48B1 MUTATED" 
       TCGA-44-2662        TCGA-44-2665        TCGA-44-2666        TCGA-44-2668 
"FAM48B1 WILD-TYPE" "FAM48B1 WILD-TYPE" "FAM48B1 WILD-TYPE" "FAM48B1 WILD-TYPE" 
       TCGA-44-3396        TCGA-44-3398        TCGA-44-3918        TCGA-44-3919 
"FAM48B1 WILD-TYPE" "FAM48B1 WILD-TYPE" "FAM48B1 WILD-TYPE" "FAM48B1 WILD-TYPE" 
       TCGA-44-4112        TCGA-44-5643        TCGA-44-5645        TCGA-44-6144 
"FAM48B1 WILD-TYPE" "FAM48B1 WILD-TYPE" "FAM48B1 WILD-TYPE" "FAM48B1 WILD-TYPE" 
       TCGA-44-6145        TCGA-44-6146        TCGA-44-6147        TCGA-44-6148 
"FAM48B1 WILD-TYPE" "FAM48B1 WILD-TYPE" "FAM48B1 WILD-TYPE" "FAM48B1 WILD-TYPE" 
       TCGA-44-6774        TCGA-44-6775        TCGA-44-6776        TCGA-44-6777 
"FAM48B1 WILD-TYPE" "FAM48B1 WILD-TYPE" "FAM48B1 WILD-TYPE" "FAM48B1 WILD-TYPE" 
       TCGA-44-6778        TCGA-44-6779        TCGA-49-4486        TCGA-49-4487 
"FAM48B1 WILD-TYPE" "FAM48B1 WILD-TYPE" "FAM48B1 WILD-TYPE" "FAM48B1 WILD-TYPE" 
       TCGA-49-4488        TCGA-49-4490        TCGA-49-4494        TCGA-49-4501 
"FAM48B1 WILD-TYPE" "FAM48B1 WILD-TYPE" "FAM48B1 WILD-TYPE" "FAM48B1 WILD-TYPE" 
       TCGA-49-4505        TCGA-49-4506        TCGA-49-4507        TCGA-49-4510 
"FAM48B1 WILD-TYPE" "FAM48B1 WILD-TYPE" "FAM48B1 WILD-TYPE" "FAM48B1 WILD-TYPE" 
       TCGA-49-4512        TCGA-49-4514        TCGA-49-6742        TCGA-49-6743 
"FAM48B1 WILD-TYPE" "FAM48B1 WILD-TYPE" "FAM48B1 WILD-TYPE" "FAM48B1 WILD-TYPE" 
       TCGA-49-6744        TCGA-49-6745        TCGA-50-5044        TCGA-50-5045 
"FAM48B1 WILD-TYPE" "FAM48B1 WILD-TYPE" "FAM48B1 WILD-TYPE" "FAM48B1 WILD-TYPE" 
       TCGA-50-5049        TCGA-50-5051        TCGA-50-5055        TCGA-50-5066 
"FAM48B1 WILD-TYPE" "FAM48B1 WILD-TYPE" "FAM48B1 WILD-TYPE" "FAM48B1 WILD-TYPE" 
       TCGA-50-5068        TCGA-50-5072        TCGA-50-5930        TCGA-50-5931 
"FAM48B1 WILD-TYPE" "FAM48B1 WILD-TYPE" "FAM48B1 WILD-TYPE"   "FAM48B1 MUTATED" 
       TCGA-50-5932        TCGA-50-5933        TCGA-50-5935        TCGA-50-5936 
"FAM48B1 WILD-TYPE" "FAM48B1 WILD-TYPE" "FAM48B1 WILD-TYPE" "FAM48B1 WILD-TYPE" 
       TCGA-50-5939        TCGA-50-5941        TCGA-50-5942        TCGA-50-5944 
"FAM48B1 WILD-TYPE" "FAM48B1 WILD-TYPE" "FAM48B1 WILD-TYPE" "FAM48B1 WILD-TYPE" 
       TCGA-50-5946        TCGA-50-6590        TCGA-50-6591        TCGA-50-6592 
"FAM48B1 WILD-TYPE" "FAM48B1 WILD-TYPE" "FAM48B1 WILD-TYPE" "FAM48B1 WILD-TYPE" 
       TCGA-50-6593        TCGA-50-6594        TCGA-50-6595        TCGA-50-6597 
"FAM48B1 WILD-TYPE" "FAM48B1 WILD-TYPE" "FAM48B1 WILD-TYPE" "FAM48B1 WILD-TYPE" 
       TCGA-55-1592        TCGA-55-1594        TCGA-55-1595        TCGA-55-1596 
"FAM48B1 WILD-TYPE" "FAM48B1 WILD-TYPE" "FAM48B1 WILD-TYPE" "FAM48B1 WILD-TYPE" 
       TCGA-55-5899        TCGA-55-6543        TCGA-55-6642        TCGA-55-6712 
"FAM48B1 WILD-TYPE" "FAM48B1 WILD-TYPE" "FAM48B1 WILD-TYPE" "FAM48B1 WILD-TYPE" 
       TCGA-64-1676        TCGA-64-1677        TCGA-64-1678        TCGA-64-1680 
"FAM48B1 WILD-TYPE" "FAM48B1 WILD-TYPE"   "FAM48B1 MUTATED" "FAM48B1 WILD-TYPE" 
       TCGA-64-5774        TCGA-64-5775        TCGA-64-5778        TCGA-64-5779 
"FAM48B1 WILD-TYPE" "FAM48B1 WILD-TYPE" "FAM48B1 WILD-TYPE" "FAM48B1 WILD-TYPE" 
       TCGA-64-5781        TCGA-64-5815        TCGA-67-3770        TCGA-67-3771 
"FAM48B1 WILD-TYPE" "FAM48B1 WILD-TYPE" "FAM48B1 WILD-TYPE" "FAM48B1 WILD-TYPE" 
       TCGA-67-3772        TCGA-67-3773        TCGA-67-3774        TCGA-67-6215 
"FAM48B1 WILD-TYPE" "FAM48B1 WILD-TYPE" "FAM48B1 WILD-TYPE" "FAM48B1 WILD-TYPE" 
       TCGA-67-6216        TCGA-67-6217        TCGA-71-6725        TCGA-73-4658 
"FAM48B1 WILD-TYPE" "FAM48B1 WILD-TYPE" "FAM48B1 WILD-TYPE" "FAM48B1 WILD-TYPE" 
       TCGA-73-4659        TCGA-73-4662        TCGA-73-4666        TCGA-73-4668 
"FAM48B1 WILD-TYPE" "FAM48B1 WILD-TYPE"   "FAM48B1 MUTATED" "FAM48B1 WILD-TYPE" 
       TCGA-73-4670        TCGA-73-4675        TCGA-73-4676        TCGA-73-4677 
"FAM48B1 WILD-TYPE" "FAM48B1 WILD-TYPE" "FAM48B1 WILD-TYPE" "FAM48B1 WILD-TYPE" 
       TCGA-91-6828        TCGA-91-6829        TCGA-91-6831        TCGA-91-6835 
"FAM48B1 WILD-TYPE" "FAM48B1 WILD-TYPE" "FAM48B1 WILD-TYPE" "FAM48B1 WILD-TYPE" 
       TCGA-91-6836 
"FAM48B1 WILD-TYPE" 
[1] "hr=" "1.1"
D125V2, continuous
D125V3, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  FAM48B1 MUTATED      8    2
  FAM48B1 WILD-TYPE   85   77
        clus
vv       FAM48B1 MUTATED FAM48B1 WILD-TYPE
  FEMALE               8                85
  MALE                 2                77
D125V4, continuous
[1] "Remove cluster labels:" "FAM48B1 MUTATED"       
clus
  FAM48B1 MUTATED FAM48B1 WILD-TYPE 
                2                10 
       TCGA-35-4122        TCGA-35-5375        TCGA-64-1677        TCGA-64-5778 
"FAM48B1 WILD-TYPE" "FAM48B1 WILD-TYPE" "FAM48B1 WILD-TYPE" "FAM48B1 WILD-TYPE" 
       TCGA-71-6725        TCGA-73-4659        TCGA-73-4662        TCGA-73-4668 
"FAM48B1 WILD-TYPE" "FAM48B1 WILD-TYPE" "FAM48B1 WILD-TYPE" "FAM48B1 WILD-TYPE" 
       TCGA-73-4676        TCGA-75-5122 
"FAM48B1 WILD-TYPE" "FAM48B1 WILD-TYPE" 
D125V5, multiclass
D125V6, multiclass
    clus
vv   FAM48B1 MUTATED FAM48B1 WILD-TYPE
  T1               3                38
  T2               7               101
  T3               0                14
  T4               0                 8
D125V7, multiclass
       clus
vv      FAM48B1 MUTATED FAM48B1 WILD-TYPE
  N0                  7                88
  N1                  2                35
  N2+N3               0                35
D125V8, multiclass
    clus
vv   FAM48B1 MUTATED FAM48B1 WILD-TYPE
  M0               9               128
  M1               1                 8
  MX               0                22
D125V9, multiclass
     clus
vv    FAM48B1 MUTATED FAM48B1 WILD-TYPE
  I                 6                82
  II                3                30
  III               0                39
  IV                1                 8
D125V10, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  FAM48B1 MUTATED      1    9
  FAM48B1 WILD-TYPE   15  147
     clus
vv    FAM48B1 MUTATED FAM48B1 WILD-TYPE
  NO                1                15
  YES               9               147
D125V11, continuous
D125V12, continuous
D125V13, multiclass
                                             clus
vv                                            FAM48B1 MUTATED FAM48B1 WILD-TYPE
  CURRENT REFORMED SMOKER FOR < OR = 15 YEARS               5                57
  CURRENT REFORMED SMOKER FOR > 15 YEARS                    2                44
  CURRENT SMOKER                                            0                28
  LIFELONG NON-SMOKER                                       2                22
D125V14, continuous

Clustering(126) Variable = GPR174 MUTATION ANALYSIS
D126V1, survival
                  sevent
clus2               0  1
  GPR174 MUTATED    4  2
  GPR174 WILD-TYPE 95 48
  GPR174 MUTATED GPR174 WILD-TYPE 
               6              143 
  GPR174 MUTATED GPR174 WILD-TYPE 
               2               48 
$`GPR174 MUTATED`
TCGA-05-4405 TCGA-38-4626 TCGA-49-6743 TCGA-50-5931 TCGA-50-6597 TCGA-91-6829 
       20.05        85.32        12.13         8.78        33.37        41.33 

$`GPR174 WILD-TYPE`
TCGA-05-4249 TCGA-05-4250 TCGA-05-4382 TCGA-05-4384 TCGA-05-4390 TCGA-05-4396 
       38.07         3.98        19.92        14.01        37.02         9.96 
TCGA-05-4397 TCGA-05-4398 TCGA-05-4402 TCGA-05-4415 TCGA-05-4417 TCGA-05-4418 
       24.03        47.05         8.02         2.96        14.93         8.98 
TCGA-05-4420 TCGA-05-4424 TCGA-05-4426 TCGA-05-4427 TCGA-05-4430 TCGA-05-4432 
       29.95        30.02        26.01        26.01        25.02        25.02 
TCGA-05-4433 TCGA-05-4434 TCGA-05-5420 TCGA-05-5423 TCGA-05-5425 TCGA-05-5429 
       24.00        15.02         1.02         4.96         2.96         0.99 
TCGA-05-5715 TCGA-35-3615 TCGA-35-4122 TCGA-35-4123 TCGA-35-5375 TCGA-38-4625 
        2.04         0.46         7.36         5.95         8.68        47.61 
TCGA-38-4627 TCGA-38-4628 TCGA-38-4629 TCGA-38-4630 TCGA-38-4631 TCGA-38-4632 
       37.71        49.02        28.37        35.28        11.64        44.61 
TCGA-38-6178 TCGA-44-2655 TCGA-44-2656 TCGA-44-2657 TCGA-44-2659 TCGA-44-2661 
        5.19        18.87        19.10        13.15        17.39         3.39 
TCGA-44-2662 TCGA-44-2665 TCGA-44-2666 TCGA-44-2668 TCGA-44-3396 TCGA-44-3398 
       15.78        13.15         3.19         8.09        10.22         8.32 
TCGA-44-3918 TCGA-44-3919 TCGA-44-4112 TCGA-44-5643 TCGA-44-5645 TCGA-44-6144 
        6.44         6.21         4.60         3.48         6.84         0.30 
TCGA-44-6145 TCGA-44-6146 TCGA-44-6147 TCGA-44-6148 TCGA-44-6774 TCGA-44-6775 
        3.35         9.93         7.76         3.12         5.42         2.70 
TCGA-44-6776 TCGA-44-6777 TCGA-44-6778 TCGA-44-6779 TCGA-49-4486 TCGA-49-4487 
       63.72        32.45        36.49        16.41        76.21        28.11 
TCGA-49-4488 TCGA-49-4490 TCGA-49-4494 TCGA-49-4501 TCGA-49-4505 TCGA-49-4506 
       28.57        12.66        35.54        46.72        14.07        32.84 
TCGA-49-4507 TCGA-49-4510 TCGA-49-4512 TCGA-49-4514 TCGA-49-6742 TCGA-49-6744 
        8.81        29.46        29.75        43.20        15.02        12.99 
TCGA-49-6745 TCGA-50-5044 TCGA-50-5045 TCGA-50-5049 TCGA-50-5051 TCGA-50-5055 
        4.93        20.48        71.47        48.82        14.96        25.81 
TCGA-50-5066 TCGA-50-5068 TCGA-50-5072 TCGA-50-5930 TCGA-50-5932 TCGA-50-5933 
        9.76        49.28         8.05         9.27        35.87        77.88 
TCGA-50-5935 TCGA-50-5936 TCGA-50-5939 TCGA-50-5941 TCGA-50-5942 TCGA-50-5944 
       21.47         8.45        15.12         9.37         4.44        12.26 
TCGA-50-5946 TCGA-50-6590 TCGA-50-6591 TCGA-50-6592 TCGA-50-6593 TCGA-50-6594 
       11.47        42.31         3.88        25.51        11.05        12.16 
TCGA-50-6595 TCGA-55-1592 TCGA-55-1594 TCGA-55-1595 TCGA-55-1596 TCGA-55-5899 
        6.21        23.05        38.73        48.62        45.17         2.86 
TCGA-55-6543 TCGA-55-6642 TCGA-55-6712 TCGA-64-1676 TCGA-64-1677 TCGA-64-1678 
        0.07        32.61         0.79        56.81        20.65        39.09 
TCGA-64-1680 TCGA-64-5774 TCGA-64-5775 TCGA-64-5778 TCGA-64-5779 TCGA-64-5781 
       37.02        83.84         0.10        30.44        16.67        39.52 
TCGA-64-5815 TCGA-67-3770 TCGA-67-3771 TCGA-67-3772 TCGA-67-3773 TCGA-67-3774 
        7.33         0.99         1.97         0.59         2.04         0.59 
TCGA-67-6215 TCGA-67-6216 TCGA-67-6217 TCGA-71-6725 TCGA-73-4658 TCGA-73-4659 
        0.89         0.69        13.87         2.01        52.57        23.38 
TCGA-73-4662 TCGA-73-4666 TCGA-73-4668 TCGA-73-4670 TCGA-73-4675 TCGA-73-4676 
       29.95        20.28        15.35         0.46         1.32         4.01 
TCGA-73-4677 TCGA-91-6828 TCGA-91-6831 TCGA-91-6835 TCGA-91-6836 
        1.25         1.22         1.28         1.15         0.36 

  GPR174 MUTATED GPR174 WILD-TYPE 
            8.78             0.07 
  GPR174 MUTATED GPR174 WILD-TYPE 
           85.32            83.84 
  GPR174 MUTATED GPR174 WILD-TYPE 
           26.71            13.15 
[1] "8.8 - 85.3 (26.7)" "0.1 - 83.8 (13.2)"
      TCGA-05-4249       TCGA-05-4250       TCGA-05-4382       TCGA-05-4384 
"GPR174 WILD-TYPE" "GPR174 WILD-TYPE" "GPR174 WILD-TYPE" "GPR174 WILD-TYPE" 
      TCGA-05-4390       TCGA-05-4396       TCGA-05-4397       TCGA-05-4398 
"GPR174 WILD-TYPE" "GPR174 WILD-TYPE" "GPR174 WILD-TYPE" "GPR174 WILD-TYPE" 
      TCGA-05-4402       TCGA-05-4405       TCGA-05-4415       TCGA-05-4417 
"GPR174 WILD-TYPE"   "GPR174 MUTATED" "GPR174 WILD-TYPE" "GPR174 WILD-TYPE" 
      TCGA-05-4418       TCGA-05-4420       TCGA-05-4424       TCGA-05-4426 
"GPR174 WILD-TYPE" "GPR174 WILD-TYPE" "GPR174 WILD-TYPE" "GPR174 WILD-TYPE" 
      TCGA-05-4427       TCGA-05-4430       TCGA-05-4432       TCGA-05-4433 
"GPR174 WILD-TYPE" "GPR174 WILD-TYPE" "GPR174 WILD-TYPE" "GPR174 WILD-TYPE" 
      TCGA-05-4434       TCGA-05-5420       TCGA-05-5423       TCGA-05-5425 
"GPR174 WILD-TYPE" "GPR174 WILD-TYPE" "GPR174 WILD-TYPE" "GPR174 WILD-TYPE" 
      TCGA-05-5429       TCGA-05-5715       TCGA-35-3615       TCGA-35-4122 
"GPR174 WILD-TYPE" "GPR174 WILD-TYPE" "GPR174 WILD-TYPE" "GPR174 WILD-TYPE" 
      TCGA-35-4123       TCGA-35-5375       TCGA-38-4625       TCGA-38-4626 
"GPR174 WILD-TYPE" "GPR174 WILD-TYPE" "GPR174 WILD-TYPE"   "GPR174 MUTATED" 
      TCGA-38-4627       TCGA-38-4628       TCGA-38-4629       TCGA-38-4630 
"GPR174 WILD-TYPE" "GPR174 WILD-TYPE" "GPR174 WILD-TYPE" "GPR174 WILD-TYPE" 
      TCGA-38-4631       TCGA-38-4632       TCGA-38-6178       TCGA-44-2655 
"GPR174 WILD-TYPE" "GPR174 WILD-TYPE" "GPR174 WILD-TYPE" "GPR174 WILD-TYPE" 
      TCGA-44-2656       TCGA-44-2657       TCGA-44-2659       TCGA-44-2661 
"GPR174 WILD-TYPE" "GPR174 WILD-TYPE" "GPR174 WILD-TYPE" "GPR174 WILD-TYPE" 
      TCGA-44-2662       TCGA-44-2665       TCGA-44-2666       TCGA-44-2668 
"GPR174 WILD-TYPE" "GPR174 WILD-TYPE" "GPR174 WILD-TYPE" "GPR174 WILD-TYPE" 
      TCGA-44-3396       TCGA-44-3398       TCGA-44-3918       TCGA-44-3919 
"GPR174 WILD-TYPE" "GPR174 WILD-TYPE" "GPR174 WILD-TYPE" "GPR174 WILD-TYPE" 
      TCGA-44-4112       TCGA-44-5643       TCGA-44-5645       TCGA-44-6144 
"GPR174 WILD-TYPE" "GPR174 WILD-TYPE" "GPR174 WILD-TYPE" "GPR174 WILD-TYPE" 
      TCGA-44-6145       TCGA-44-6146       TCGA-44-6147       TCGA-44-6148 
"GPR174 WILD-TYPE" "GPR174 WILD-TYPE" "GPR174 WILD-TYPE" "GPR174 WILD-TYPE" 
      TCGA-44-6774       TCGA-44-6775       TCGA-44-6776       TCGA-44-6777 
"GPR174 WILD-TYPE" "GPR174 WILD-TYPE" "GPR174 WILD-TYPE" "GPR174 WILD-TYPE" 
      TCGA-44-6778       TCGA-44-6779       TCGA-49-4486       TCGA-49-4487 
"GPR174 WILD-TYPE" "GPR174 WILD-TYPE" "GPR174 WILD-TYPE" "GPR174 WILD-TYPE" 
      TCGA-49-4488       TCGA-49-4490       TCGA-49-4494       TCGA-49-4501 
"GPR174 WILD-TYPE" "GPR174 WILD-TYPE" "GPR174 WILD-TYPE" "GPR174 WILD-TYPE" 
      TCGA-49-4505       TCGA-49-4506       TCGA-49-4507       TCGA-49-4510 
"GPR174 WILD-TYPE" "GPR174 WILD-TYPE" "GPR174 WILD-TYPE" "GPR174 WILD-TYPE" 
      TCGA-49-4512       TCGA-49-4514       TCGA-49-6742       TCGA-49-6743 
"GPR174 WILD-TYPE" "GPR174 WILD-TYPE" "GPR174 WILD-TYPE"   "GPR174 MUTATED" 
      TCGA-49-6744       TCGA-49-6745       TCGA-50-5044       TCGA-50-5045 
"GPR174 WILD-TYPE" "GPR174 WILD-TYPE" "GPR174 WILD-TYPE" "GPR174 WILD-TYPE" 
      TCGA-50-5049       TCGA-50-5051       TCGA-50-5055       TCGA-50-5066 
"GPR174 WILD-TYPE" "GPR174 WILD-TYPE" "GPR174 WILD-TYPE" "GPR174 WILD-TYPE" 
      TCGA-50-5068       TCGA-50-5072       TCGA-50-5930       TCGA-50-5931 
"GPR174 WILD-TYPE" "GPR174 WILD-TYPE" "GPR174 WILD-TYPE"   "GPR174 MUTATED" 
      TCGA-50-5932       TCGA-50-5933       TCGA-50-5935       TCGA-50-5936 
"GPR174 WILD-TYPE" "GPR174 WILD-TYPE" "GPR174 WILD-TYPE" "GPR174 WILD-TYPE" 
      TCGA-50-5939       TCGA-50-5941       TCGA-50-5942       TCGA-50-5944 
"GPR174 WILD-TYPE" "GPR174 WILD-TYPE" "GPR174 WILD-TYPE" "GPR174 WILD-TYPE" 
      TCGA-50-5946       TCGA-50-6590       TCGA-50-6591       TCGA-50-6592 
"GPR174 WILD-TYPE" "GPR174 WILD-TYPE" "GPR174 WILD-TYPE" "GPR174 WILD-TYPE" 
      TCGA-50-6593       TCGA-50-6594       TCGA-50-6595       TCGA-50-6597 
"GPR174 WILD-TYPE" "GPR174 WILD-TYPE" "GPR174 WILD-TYPE"   "GPR174 MUTATED" 
      TCGA-55-1592       TCGA-55-1594       TCGA-55-1595       TCGA-55-1596 
"GPR174 WILD-TYPE" "GPR174 WILD-TYPE" "GPR174 WILD-TYPE" "GPR174 WILD-TYPE" 
      TCGA-55-5899       TCGA-55-6543       TCGA-55-6642       TCGA-55-6712 
"GPR174 WILD-TYPE" "GPR174 WILD-TYPE" "GPR174 WILD-TYPE" "GPR174 WILD-TYPE" 
      TCGA-64-1676       TCGA-64-1677       TCGA-64-1678       TCGA-64-1680 
"GPR174 WILD-TYPE" "GPR174 WILD-TYPE" "GPR174 WILD-TYPE" "GPR174 WILD-TYPE" 
      TCGA-64-5774       TCGA-64-5775       TCGA-64-5778       TCGA-64-5779 
"GPR174 WILD-TYPE" "GPR174 WILD-TYPE" "GPR174 WILD-TYPE" "GPR174 WILD-TYPE" 
      TCGA-64-5781       TCGA-64-5815       TCGA-67-3770       TCGA-67-3771 
"GPR174 WILD-TYPE" "GPR174 WILD-TYPE" "GPR174 WILD-TYPE" "GPR174 WILD-TYPE" 
      TCGA-67-3772       TCGA-67-3773       TCGA-67-3774       TCGA-67-6215 
"GPR174 WILD-TYPE" "GPR174 WILD-TYPE" "GPR174 WILD-TYPE" "GPR174 WILD-TYPE" 
      TCGA-67-6216       TCGA-67-6217       TCGA-71-6725       TCGA-73-4658 
"GPR174 WILD-TYPE" "GPR174 WILD-TYPE" "GPR174 WILD-TYPE" "GPR174 WILD-TYPE" 
      TCGA-73-4659       TCGA-73-4662       TCGA-73-4666       TCGA-73-4668 
"GPR174 WILD-TYPE" "GPR174 WILD-TYPE" "GPR174 WILD-TYPE" "GPR174 WILD-TYPE" 
      TCGA-73-4670       TCGA-73-4675       TCGA-73-4676       TCGA-73-4677 
"GPR174 WILD-TYPE" "GPR174 WILD-TYPE" "GPR174 WILD-TYPE" "GPR174 WILD-TYPE" 
      TCGA-91-6828       TCGA-91-6829       TCGA-91-6831       TCGA-91-6835 
"GPR174 WILD-TYPE"   "GPR174 MUTATED" "GPR174 WILD-TYPE" "GPR174 WILD-TYPE" 
      TCGA-91-6836 
"GPR174 WILD-TYPE" 
      TCGA-05-4249       TCGA-05-4250       TCGA-05-4382       TCGA-05-4384 
"GPR174 WILD-TYPE" "GPR174 WILD-TYPE" "GPR174 WILD-TYPE" "GPR174 WILD-TYPE" 
      TCGA-05-4390       TCGA-05-4396       TCGA-05-4397       TCGA-05-4398 
"GPR174 WILD-TYPE" "GPR174 WILD-TYPE" "GPR174 WILD-TYPE" "GPR174 WILD-TYPE" 
      TCGA-05-4402       TCGA-05-4405       TCGA-05-4415       TCGA-05-4417 
"GPR174 WILD-TYPE"   "GPR174 MUTATED" "GPR174 WILD-TYPE" "GPR174 WILD-TYPE" 
      TCGA-05-4418       TCGA-05-4420       TCGA-05-4424       TCGA-05-4426 
"GPR174 WILD-TYPE" "GPR174 WILD-TYPE" "GPR174 WILD-TYPE" "GPR174 WILD-TYPE" 
      TCGA-05-4427       TCGA-05-4430       TCGA-05-4432       TCGA-05-4433 
"GPR174 WILD-TYPE" "GPR174 WILD-TYPE" "GPR174 WILD-TYPE" "GPR174 WILD-TYPE" 
      TCGA-05-4434       TCGA-05-5420       TCGA-05-5423       TCGA-05-5425 
"GPR174 WILD-TYPE" "GPR174 WILD-TYPE" "GPR174 WILD-TYPE" "GPR174 WILD-TYPE" 
      TCGA-05-5429       TCGA-05-5715       TCGA-35-3615       TCGA-35-4122 
"GPR174 WILD-TYPE" "GPR174 WILD-TYPE" "GPR174 WILD-TYPE" "GPR174 WILD-TYPE" 
      TCGA-35-4123       TCGA-35-5375       TCGA-38-4625       TCGA-38-4626 
"GPR174 WILD-TYPE" "GPR174 WILD-TYPE" "GPR174 WILD-TYPE"   "GPR174 MUTATED" 
      TCGA-38-4627       TCGA-38-4628       TCGA-38-4629       TCGA-38-4630 
"GPR174 WILD-TYPE" "GPR174 WILD-TYPE" "GPR174 WILD-TYPE" "GPR174 WILD-TYPE" 
      TCGA-38-4631       TCGA-38-4632       TCGA-38-6178       TCGA-44-2655 
"GPR174 WILD-TYPE" "GPR174 WILD-TYPE" "GPR174 WILD-TYPE" "GPR174 WILD-TYPE" 
      TCGA-44-2656       TCGA-44-2657       TCGA-44-2659       TCGA-44-2661 
"GPR174 WILD-TYPE" "GPR174 WILD-TYPE" "GPR174 WILD-TYPE" "GPR174 WILD-TYPE" 
      TCGA-44-2662       TCGA-44-2665       TCGA-44-2666       TCGA-44-2668 
"GPR174 WILD-TYPE" "GPR174 WILD-TYPE" "GPR174 WILD-TYPE" "GPR174 WILD-TYPE" 
      TCGA-44-3396       TCGA-44-3398       TCGA-44-3918       TCGA-44-3919 
"GPR174 WILD-TYPE" "GPR174 WILD-TYPE" "GPR174 WILD-TYPE" "GPR174 WILD-TYPE" 
      TCGA-44-4112       TCGA-44-5643       TCGA-44-5645       TCGA-44-6144 
"GPR174 WILD-TYPE" "GPR174 WILD-TYPE" "GPR174 WILD-TYPE" "GPR174 WILD-TYPE" 
      TCGA-44-6145       TCGA-44-6146       TCGA-44-6147       TCGA-44-6148 
"GPR174 WILD-TYPE" "GPR174 WILD-TYPE" "GPR174 WILD-TYPE" "GPR174 WILD-TYPE" 
      TCGA-44-6774       TCGA-44-6775       TCGA-44-6776       TCGA-44-6777 
"GPR174 WILD-TYPE" "GPR174 WILD-TYPE" "GPR174 WILD-TYPE" "GPR174 WILD-TYPE" 
      TCGA-44-6778       TCGA-44-6779       TCGA-49-4486       TCGA-49-4487 
"GPR174 WILD-TYPE" "GPR174 WILD-TYPE" "GPR174 WILD-TYPE" "GPR174 WILD-TYPE" 
      TCGA-49-4488       TCGA-49-4490       TCGA-49-4494       TCGA-49-4501 
"GPR174 WILD-TYPE" "GPR174 WILD-TYPE" "GPR174 WILD-TYPE" "GPR174 WILD-TYPE" 
      TCGA-49-4505       TCGA-49-4506       TCGA-49-4507       TCGA-49-4510 
"GPR174 WILD-TYPE" "GPR174 WILD-TYPE" "GPR174 WILD-TYPE" "GPR174 WILD-TYPE" 
      TCGA-49-4512       TCGA-49-4514       TCGA-49-6742       TCGA-49-6743 
"GPR174 WILD-TYPE" "GPR174 WILD-TYPE" "GPR174 WILD-TYPE"   "GPR174 MUTATED" 
      TCGA-49-6744       TCGA-49-6745       TCGA-50-5044       TCGA-50-5045 
"GPR174 WILD-TYPE" "GPR174 WILD-TYPE" "GPR174 WILD-TYPE" "GPR174 WILD-TYPE" 
      TCGA-50-5049       TCGA-50-5051       TCGA-50-5055       TCGA-50-5066 
"GPR174 WILD-TYPE" "GPR174 WILD-TYPE" "GPR174 WILD-TYPE" "GPR174 WILD-TYPE" 
      TCGA-50-5068       TCGA-50-5072       TCGA-50-5930       TCGA-50-5931 
"GPR174 WILD-TYPE" "GPR174 WILD-TYPE" "GPR174 WILD-TYPE"   "GPR174 MUTATED" 
      TCGA-50-5932       TCGA-50-5933       TCGA-50-5935       TCGA-50-5936 
"GPR174 WILD-TYPE" "GPR174 WILD-TYPE" "GPR174 WILD-TYPE" "GPR174 WILD-TYPE" 
      TCGA-50-5939       TCGA-50-5941       TCGA-50-5942       TCGA-50-5944 
"GPR174 WILD-TYPE" "GPR174 WILD-TYPE" "GPR174 WILD-TYPE" "GPR174 WILD-TYPE" 
      TCGA-50-5946       TCGA-50-6590       TCGA-50-6591       TCGA-50-6592 
"GPR174 WILD-TYPE" "GPR174 WILD-TYPE" "GPR174 WILD-TYPE" "GPR174 WILD-TYPE" 
      TCGA-50-6593       TCGA-50-6594       TCGA-50-6595       TCGA-50-6597 
"GPR174 WILD-TYPE" "GPR174 WILD-TYPE" "GPR174 WILD-TYPE"   "GPR174 MUTATED" 
      TCGA-55-1592       TCGA-55-1594       TCGA-55-1595       TCGA-55-1596 
"GPR174 WILD-TYPE" "GPR174 WILD-TYPE" "GPR174 WILD-TYPE" "GPR174 WILD-TYPE" 
      TCGA-55-5899       TCGA-55-6543       TCGA-55-6642       TCGA-55-6712 
"GPR174 WILD-TYPE" "GPR174 WILD-TYPE" "GPR174 WILD-TYPE" "GPR174 WILD-TYPE" 
      TCGA-64-1676       TCGA-64-1677       TCGA-64-1678       TCGA-64-1680 
"GPR174 WILD-TYPE" "GPR174 WILD-TYPE" "GPR174 WILD-TYPE" "GPR174 WILD-TYPE" 
      TCGA-64-5774       TCGA-64-5775       TCGA-64-5778       TCGA-64-5779 
"GPR174 WILD-TYPE" "GPR174 WILD-TYPE" "GPR174 WILD-TYPE" "GPR174 WILD-TYPE" 
      TCGA-64-5781       TCGA-64-5815       TCGA-67-3770       TCGA-67-3771 
"GPR174 WILD-TYPE" "GPR174 WILD-TYPE" "GPR174 WILD-TYPE" "GPR174 WILD-TYPE" 
      TCGA-67-3772       TCGA-67-3773       TCGA-67-3774       TCGA-67-6215 
"GPR174 WILD-TYPE" "GPR174 WILD-TYPE" "GPR174 WILD-TYPE" "GPR174 WILD-TYPE" 
      TCGA-67-6216       TCGA-67-6217       TCGA-71-6725       TCGA-73-4658 
"GPR174 WILD-TYPE" "GPR174 WILD-TYPE" "GPR174 WILD-TYPE" "GPR174 WILD-TYPE" 
      TCGA-73-4659       TCGA-73-4662       TCGA-73-4666       TCGA-73-4668 
"GPR174 WILD-TYPE" "GPR174 WILD-TYPE" "GPR174 WILD-TYPE" "GPR174 WILD-TYPE" 
      TCGA-73-4670       TCGA-73-4675       TCGA-73-4676       TCGA-73-4677 
"GPR174 WILD-TYPE" "GPR174 WILD-TYPE" "GPR174 WILD-TYPE" "GPR174 WILD-TYPE" 
      TCGA-91-6828       TCGA-91-6829       TCGA-91-6831       TCGA-91-6835 
"GPR174 WILD-TYPE"   "GPR174 MUTATED" "GPR174 WILD-TYPE" "GPR174 WILD-TYPE" 
      TCGA-91-6836 
"GPR174 WILD-TYPE" 
      TCGA-05-4249       TCGA-05-4250       TCGA-05-4382       TCGA-05-4384 
"GPR174 WILD-TYPE" "GPR174 WILD-TYPE" "GPR174 WILD-TYPE" "GPR174 WILD-TYPE" 
      TCGA-05-4390       TCGA-05-4396       TCGA-05-4397       TCGA-05-4398 
"GPR174 WILD-TYPE" "GPR174 WILD-TYPE" "GPR174 WILD-TYPE" "GPR174 WILD-TYPE" 
      TCGA-05-4402       TCGA-05-4405       TCGA-05-4415       TCGA-05-4417 
"GPR174 WILD-TYPE"   "GPR174 MUTATED" "GPR174 WILD-TYPE" "GPR174 WILD-TYPE" 
      TCGA-05-4418       TCGA-05-4420       TCGA-05-4424       TCGA-05-4426 
"GPR174 WILD-TYPE" "GPR174 WILD-TYPE" "GPR174 WILD-TYPE" "GPR174 WILD-TYPE" 
      TCGA-05-4427       TCGA-05-4430       TCGA-05-4432       TCGA-05-4433 
"GPR174 WILD-TYPE" "GPR174 WILD-TYPE" "GPR174 WILD-TYPE" "GPR174 WILD-TYPE" 
      TCGA-05-4434       TCGA-05-5420       TCGA-05-5423       TCGA-05-5425 
"GPR174 WILD-TYPE" "GPR174 WILD-TYPE" "GPR174 WILD-TYPE" "GPR174 WILD-TYPE" 
      TCGA-05-5429       TCGA-05-5715       TCGA-35-3615       TCGA-35-4122 
"GPR174 WILD-TYPE" "GPR174 WILD-TYPE" "GPR174 WILD-TYPE" "GPR174 WILD-TYPE" 
      TCGA-35-4123       TCGA-35-5375       TCGA-38-4625       TCGA-38-4626 
"GPR174 WILD-TYPE" "GPR174 WILD-TYPE" "GPR174 WILD-TYPE"   "GPR174 MUTATED" 
      TCGA-38-4627       TCGA-38-4628       TCGA-38-4629       TCGA-38-4630 
"GPR174 WILD-TYPE" "GPR174 WILD-TYPE" "GPR174 WILD-TYPE" "GPR174 WILD-TYPE" 
      TCGA-38-4631       TCGA-38-4632       TCGA-38-6178       TCGA-44-2655 
"GPR174 WILD-TYPE" "GPR174 WILD-TYPE" "GPR174 WILD-TYPE" "GPR174 WILD-TYPE" 
      TCGA-44-2656       TCGA-44-2657       TCGA-44-2659       TCGA-44-2661 
"GPR174 WILD-TYPE" "GPR174 WILD-TYPE" "GPR174 WILD-TYPE" "GPR174 WILD-TYPE" 
      TCGA-44-2662       TCGA-44-2665       TCGA-44-2666       TCGA-44-2668 
"GPR174 WILD-TYPE" "GPR174 WILD-TYPE" "GPR174 WILD-TYPE" "GPR174 WILD-TYPE" 
      TCGA-44-3396       TCGA-44-3398       TCGA-44-3918       TCGA-44-3919 
"GPR174 WILD-TYPE" "GPR174 WILD-TYPE" "GPR174 WILD-TYPE" "GPR174 WILD-TYPE" 
      TCGA-44-4112       TCGA-44-5643       TCGA-44-5645       TCGA-44-6144 
"GPR174 WILD-TYPE" "GPR174 WILD-TYPE" "GPR174 WILD-TYPE" "GPR174 WILD-TYPE" 
      TCGA-44-6145       TCGA-44-6146       TCGA-44-6147       TCGA-44-6148 
"GPR174 WILD-TYPE" "GPR174 WILD-TYPE" "GPR174 WILD-TYPE" "GPR174 WILD-TYPE" 
      TCGA-44-6774       TCGA-44-6775       TCGA-44-6776       TCGA-44-6777 
"GPR174 WILD-TYPE" "GPR174 WILD-TYPE" "GPR174 WILD-TYPE" "GPR174 WILD-TYPE" 
      TCGA-44-6778       TCGA-44-6779       TCGA-49-4486       TCGA-49-4487 
"GPR174 WILD-TYPE" "GPR174 WILD-TYPE" "GPR174 WILD-TYPE" "GPR174 WILD-TYPE" 
      TCGA-49-4488       TCGA-49-4490       TCGA-49-4494       TCGA-49-4501 
"GPR174 WILD-TYPE" "GPR174 WILD-TYPE" "GPR174 WILD-TYPE" "GPR174 WILD-TYPE" 
      TCGA-49-4505       TCGA-49-4506       TCGA-49-4507       TCGA-49-4510 
"GPR174 WILD-TYPE" "GPR174 WILD-TYPE" "GPR174 WILD-TYPE" "GPR174 WILD-TYPE" 
      TCGA-49-4512       TCGA-49-4514       TCGA-49-6742       TCGA-49-6743 
"GPR174 WILD-TYPE" "GPR174 WILD-TYPE" "GPR174 WILD-TYPE"   "GPR174 MUTATED" 
      TCGA-49-6744       TCGA-49-6745       TCGA-50-5044       TCGA-50-5045 
"GPR174 WILD-TYPE" "GPR174 WILD-TYPE" "GPR174 WILD-TYPE" "GPR174 WILD-TYPE" 
      TCGA-50-5049       TCGA-50-5051       TCGA-50-5055       TCGA-50-5066 
"GPR174 WILD-TYPE" "GPR174 WILD-TYPE" "GPR174 WILD-TYPE" "GPR174 WILD-TYPE" 
      TCGA-50-5068       TCGA-50-5072       TCGA-50-5930       TCGA-50-5931 
"GPR174 WILD-TYPE" "GPR174 WILD-TYPE" "GPR174 WILD-TYPE"   "GPR174 MUTATED" 
      TCGA-50-5932       TCGA-50-5933       TCGA-50-5935       TCGA-50-5936 
"GPR174 WILD-TYPE" "GPR174 WILD-TYPE" "GPR174 WILD-TYPE" "GPR174 WILD-TYPE" 
      TCGA-50-5939       TCGA-50-5941       TCGA-50-5942       TCGA-50-5944 
"GPR174 WILD-TYPE" "GPR174 WILD-TYPE" "GPR174 WILD-TYPE" "GPR174 WILD-TYPE" 
      TCGA-50-5946       TCGA-50-6590       TCGA-50-6591       TCGA-50-6592 
"GPR174 WILD-TYPE" "GPR174 WILD-TYPE" "GPR174 WILD-TYPE" "GPR174 WILD-TYPE" 
      TCGA-50-6593       TCGA-50-6594       TCGA-50-6595       TCGA-50-6597 
"GPR174 WILD-TYPE" "GPR174 WILD-TYPE" "GPR174 WILD-TYPE"   "GPR174 MUTATED" 
      TCGA-55-1592       TCGA-55-1594       TCGA-55-1595       TCGA-55-1596 
"GPR174 WILD-TYPE" "GPR174 WILD-TYPE" "GPR174 WILD-TYPE" "GPR174 WILD-TYPE" 
      TCGA-55-5899       TCGA-55-6543       TCGA-55-6642       TCGA-55-6712 
"GPR174 WILD-TYPE" "GPR174 WILD-TYPE" "GPR174 WILD-TYPE" "GPR174 WILD-TYPE" 
      TCGA-64-1676       TCGA-64-1677       TCGA-64-1678       TCGA-64-1680 
"GPR174 WILD-TYPE" "GPR174 WILD-TYPE" "GPR174 WILD-TYPE" "GPR174 WILD-TYPE" 
      TCGA-64-5774       TCGA-64-5775       TCGA-64-5778       TCGA-64-5779 
"GPR174 WILD-TYPE" "GPR174 WILD-TYPE" "GPR174 WILD-TYPE" "GPR174 WILD-TYPE" 
      TCGA-64-5781       TCGA-64-5815       TCGA-67-3770       TCGA-67-3771 
"GPR174 WILD-TYPE" "GPR174 WILD-TYPE" "GPR174 WILD-TYPE" "GPR174 WILD-TYPE" 
      TCGA-67-3772       TCGA-67-3773       TCGA-67-3774       TCGA-67-6215 
"GPR174 WILD-TYPE" "GPR174 WILD-TYPE" "GPR174 WILD-TYPE" "GPR174 WILD-TYPE" 
      TCGA-67-6216       TCGA-67-6217       TCGA-71-6725       TCGA-73-4658 
"GPR174 WILD-TYPE" "GPR174 WILD-TYPE" "GPR174 WILD-TYPE" "GPR174 WILD-TYPE" 
      TCGA-73-4659       TCGA-73-4662       TCGA-73-4666       TCGA-73-4668 
"GPR174 WILD-TYPE" "GPR174 WILD-TYPE" "GPR174 WILD-TYPE" "GPR174 WILD-TYPE" 
      TCGA-73-4670       TCGA-73-4675       TCGA-73-4676       TCGA-73-4677 
"GPR174 WILD-TYPE" "GPR174 WILD-TYPE" "GPR174 WILD-TYPE" "GPR174 WILD-TYPE" 
      TCGA-91-6828       TCGA-91-6829       TCGA-91-6831       TCGA-91-6835 
"GPR174 WILD-TYPE"   "GPR174 MUTATED" "GPR174 WILD-TYPE" "GPR174 WILD-TYPE" 
      TCGA-91-6836 
"GPR174 WILD-TYPE" 
[1] "hr=" "2"  
D126V2, continuous
D126V3, binary
[1] "tbl2"
                  cls
clus               [,1] [,2]
  GPR174 MUTATED      5    1
  GPR174 WILD-TYPE   88   78
        clus
vv       GPR174 MUTATED GPR174 WILD-TYPE
  FEMALE              5               88
  MALE                1               78
D126V4, continuous
D126V5, multiclass
D126V6, multiclass
    clus
vv   GPR174 MUTATED GPR174 WILD-TYPE
  T1              1               40
  T2              5              103
  T3              0               14
  T4              0                8
D126V7, multiclass
       clus
vv      GPR174 MUTATED GPR174 WILD-TYPE
  N0                 5               90
  N1                 0               37
  N2+N3              1               34
D126V8, multiclass
    clus
vv   GPR174 MUTATED GPR174 WILD-TYPE
  M0              4              133
  M1              0                9
  MX              2               20
D126V9, multiclass
     clus
vv    GPR174 MUTATED GPR174 WILD-TYPE
  I                4               84
  II               1               32
  III              1               38
  IV               0                9
D126V10, binary
[1] "tbl2"
                  cls
clus               [,1] [,2]
  GPR174 MUTATED      0    6
  GPR174 WILD-TYPE   16  150
     clus
vv    GPR174 MUTATED GPR174 WILD-TYPE
  NO               0               16
  YES              6              150
D126V11, continuous
D126V12, continuous
[1] "Remove cluster labels:" "GPR174 MUTATED"        
clus
  GPR174 MUTATED GPR174 WILD-TYPE 
               2               80 
      TCGA-05-4384       TCGA-05-4390       TCGA-05-4396       TCGA-05-4403 
"GPR174 WILD-TYPE" "GPR174 WILD-TYPE" "GPR174 WILD-TYPE" "GPR174 WILD-TYPE" 
      TCGA-05-4410       TCGA-05-4415       TCGA-05-4417       TCGA-05-4424 
"GPR174 WILD-TYPE" "GPR174 WILD-TYPE" "GPR174 WILD-TYPE" "GPR174 WILD-TYPE" 
      TCGA-05-4427       TCGA-05-4433       TCGA-05-5420       TCGA-05-5423 
"GPR174 WILD-TYPE" "GPR174 WILD-TYPE" "GPR174 WILD-TYPE" "GPR174 WILD-TYPE" 
      TCGA-05-5425       TCGA-05-5428       TCGA-35-4122       TCGA-35-4123 
"GPR174 WILD-TYPE" "GPR174 WILD-TYPE" "GPR174 WILD-TYPE" "GPR174 WILD-TYPE" 
      TCGA-35-5375       TCGA-38-4629       TCGA-38-4632       TCGA-44-2655 
"GPR174 WILD-TYPE" "GPR174 WILD-TYPE" "GPR174 WILD-TYPE" "GPR174 WILD-TYPE" 
      TCGA-44-2656       TCGA-44-2657       TCGA-44-2659       TCGA-44-2662 
"GPR174 WILD-TYPE" "GPR174 WILD-TYPE" "GPR174 WILD-TYPE" "GPR174 WILD-TYPE" 
      TCGA-44-2668       TCGA-44-3398       TCGA-44-3918       TCGA-44-4112 
"GPR174 WILD-TYPE" "GPR174 WILD-TYPE" "GPR174 WILD-TYPE" "GPR174 WILD-TYPE" 
      TCGA-44-5645       TCGA-44-6145       TCGA-44-6146       TCGA-44-6147 
"GPR174 WILD-TYPE" "GPR174 WILD-TYPE" "GPR174 WILD-TYPE" "GPR174 WILD-TYPE" 
      TCGA-44-6148       TCGA-44-6775       TCGA-44-6776       TCGA-44-6777 
"GPR174 WILD-TYPE" "GPR174 WILD-TYPE" "GPR174 WILD-TYPE" "GPR174 WILD-TYPE" 
      TCGA-44-6778       TCGA-44-6779       TCGA-49-4486       TCGA-49-4488 
"GPR174 WILD-TYPE" "GPR174 WILD-TYPE" "GPR174 WILD-TYPE" "GPR174 WILD-TYPE" 
      TCGA-49-4494       TCGA-49-4505       TCGA-49-4507       TCGA-50-5051 
"GPR174 WILD-TYPE" "GPR174 WILD-TYPE" "GPR174 WILD-TYPE" "GPR174 WILD-TYPE" 
      TCGA-50-5072       TCGA-50-5939       TCGA-50-5942       TCGA-50-5946 
"GPR174 WILD-TYPE" "GPR174 WILD-TYPE" "GPR174 WILD-TYPE" "GPR174 WILD-TYPE" 
      TCGA-50-6590       TCGA-50-6594       TCGA-50-6595       TCGA-55-1592 
"GPR174 WILD-TYPE" "GPR174 WILD-TYPE" "GPR174 WILD-TYPE" "GPR174 WILD-TYPE" 
      TCGA-55-1595       TCGA-55-6543       TCGA-55-6712       TCGA-64-1678 
"GPR174 WILD-TYPE" "GPR174 WILD-TYPE" "GPR174 WILD-TYPE" "GPR174 WILD-TYPE" 
      TCGA-64-1680       TCGA-64-5774       TCGA-64-5778       TCGA-64-5779 
"GPR174 WILD-TYPE" "GPR174 WILD-TYPE" "GPR174 WILD-TYPE" "GPR174 WILD-TYPE" 
      TCGA-64-5781       TCGA-64-5815       TCGA-67-6217       TCGA-73-4659 
"GPR174 WILD-TYPE" "GPR174 WILD-TYPE" "GPR174 WILD-TYPE" "GPR174 WILD-TYPE" 
      TCGA-73-4662       TCGA-73-4666       TCGA-73-4668       TCGA-73-4670 
"GPR174 WILD-TYPE" "GPR174 WILD-TYPE" "GPR174 WILD-TYPE" "GPR174 WILD-TYPE" 
      TCGA-73-4675       TCGA-73-4676       TCGA-73-4677       TCGA-75-5122 
"GPR174 WILD-TYPE" "GPR174 WILD-TYPE" "GPR174 WILD-TYPE" "GPR174 WILD-TYPE" 
      TCGA-75-5125       TCGA-75-5126       TCGA-75-5146       TCGA-75-6206 
"GPR174 WILD-TYPE" "GPR174 WILD-TYPE" "GPR174 WILD-TYPE" "GPR174 WILD-TYPE" 
      TCGA-75-6207       TCGA-80-5611       TCGA-91-6828       TCGA-91-6835 
"GPR174 WILD-TYPE" "GPR174 WILD-TYPE" "GPR174 WILD-TYPE" "GPR174 WILD-TYPE" 
D126V13, multiclass
                                             clus
vv                                            GPR174 MUTATED GPR174 WILD-TYPE
  CURRENT REFORMED SMOKER FOR < OR = 15 YEARS              3               59
  CURRENT REFORMED SMOKER FOR > 15 YEARS                   0               46
  CURRENT SMOKER                                           1               27
  LIFELONG NON-SMOKER                                      1               23
D126V14, continuous

Clustering(127) Variable = OR10A2 MUTATION ANALYSIS
D127V1, survival
                  sevent
clus2               0  1
  OR10A2 MUTATED    5  1
  OR10A2 WILD-TYPE 94 49
  OR10A2 MUTATED OR10A2 WILD-TYPE 
               6              143 
  OR10A2 MUTATED OR10A2 WILD-TYPE 
               1               49 
$`OR10A2 MUTATED`
TCGA-05-4420 TCGA-05-4427 TCGA-05-4432 TCGA-44-6776 TCGA-73-4668 TCGA-91-6829 
       29.95        26.01        25.02        63.72        15.35        41.33 

$`OR10A2 WILD-TYPE`
TCGA-05-4249 TCGA-05-4250 TCGA-05-4382 TCGA-05-4384 TCGA-05-4390 TCGA-05-4396 
       38.07         3.98        19.92        14.01        37.02         9.96 
TCGA-05-4397 TCGA-05-4398 TCGA-05-4402 TCGA-05-4405 TCGA-05-4415 TCGA-05-4417 
       24.03        47.05         8.02        20.05         2.96        14.93 
TCGA-05-4418 TCGA-05-4424 TCGA-05-4426 TCGA-05-4430 TCGA-05-4433 TCGA-05-4434 
        8.98        30.02        26.01        25.02        24.00        15.02 
TCGA-05-5420 TCGA-05-5423 TCGA-05-5425 TCGA-05-5429 TCGA-05-5715 TCGA-35-3615 
        1.02         4.96         2.96         0.99         2.04         0.46 
TCGA-35-4122 TCGA-35-4123 TCGA-35-5375 TCGA-38-4625 TCGA-38-4626 TCGA-38-4627 
        7.36         5.95         8.68        47.61        85.32        37.71 
TCGA-38-4628 TCGA-38-4629 TCGA-38-4630 TCGA-38-4631 TCGA-38-4632 TCGA-38-6178 
       49.02        28.37        35.28        11.64        44.61         5.19 
TCGA-44-2655 TCGA-44-2656 TCGA-44-2657 TCGA-44-2659 TCGA-44-2661 TCGA-44-2662 
       18.87        19.10        13.15        17.39         3.39        15.78 
TCGA-44-2665 TCGA-44-2666 TCGA-44-2668 TCGA-44-3396 TCGA-44-3398 TCGA-44-3918 
       13.15         3.19         8.09        10.22         8.32         6.44 
TCGA-44-3919 TCGA-44-4112 TCGA-44-5643 TCGA-44-5645 TCGA-44-6144 TCGA-44-6145 
        6.21         4.60         3.48         6.84         0.30         3.35 
TCGA-44-6146 TCGA-44-6147 TCGA-44-6148 TCGA-44-6774 TCGA-44-6775 TCGA-44-6777 
        9.93         7.76         3.12         5.42         2.70        32.45 
TCGA-44-6778 TCGA-44-6779 TCGA-49-4486 TCGA-49-4487 TCGA-49-4488 TCGA-49-4490 
       36.49        16.41        76.21        28.11        28.57        12.66 
TCGA-49-4494 TCGA-49-4501 TCGA-49-4505 TCGA-49-4506 TCGA-49-4507 TCGA-49-4510 
       35.54        46.72        14.07        32.84         8.81        29.46 
TCGA-49-4512 TCGA-49-4514 TCGA-49-6742 TCGA-49-6743 TCGA-49-6744 TCGA-49-6745 
       29.75        43.20        15.02        12.13        12.99         4.93 
TCGA-50-5044 TCGA-50-5045 TCGA-50-5049 TCGA-50-5051 TCGA-50-5055 TCGA-50-5066 
       20.48        71.47        48.82        14.96        25.81         9.76 
TCGA-50-5068 TCGA-50-5072 TCGA-50-5930 TCGA-50-5931 TCGA-50-5932 TCGA-50-5933 
       49.28         8.05         9.27         8.78        35.87        77.88 
TCGA-50-5935 TCGA-50-5936 TCGA-50-5939 TCGA-50-5941 TCGA-50-5942 TCGA-50-5944 
       21.47         8.45        15.12         9.37         4.44        12.26 
TCGA-50-5946 TCGA-50-6590 TCGA-50-6591 TCGA-50-6592 TCGA-50-6593 TCGA-50-6594 
       11.47        42.31         3.88        25.51        11.05        12.16 
TCGA-50-6595 TCGA-50-6597 TCGA-55-1592 TCGA-55-1594 TCGA-55-1595 TCGA-55-1596 
        6.21        33.37        23.05        38.73        48.62        45.17 
TCGA-55-5899 TCGA-55-6543 TCGA-55-6642 TCGA-55-6712 TCGA-64-1676 TCGA-64-1677 
        2.86         0.07        32.61         0.79        56.81        20.65 
TCGA-64-1678 TCGA-64-1680 TCGA-64-5774 TCGA-64-5775 TCGA-64-5778 TCGA-64-5779 
       39.09        37.02        83.84         0.10        30.44        16.67 
TCGA-64-5781 TCGA-64-5815 TCGA-67-3770 TCGA-67-3771 TCGA-67-3772 TCGA-67-3773 
       39.52         7.33         0.99         1.97         0.59         2.04 
TCGA-67-3774 TCGA-67-6215 TCGA-67-6216 TCGA-67-6217 TCGA-71-6725 TCGA-73-4658 
        0.59         0.89         0.69        13.87         2.01        52.57 
TCGA-73-4659 TCGA-73-4662 TCGA-73-4666 TCGA-73-4670 TCGA-73-4675 TCGA-73-4676 
       23.38        29.95        20.28         0.46         1.32         4.01 
TCGA-73-4677 TCGA-91-6828 TCGA-91-6831 TCGA-91-6835 TCGA-91-6836 
        1.25         1.22         1.28         1.15         0.36 

  OR10A2 MUTATED OR10A2 WILD-TYPE 
           15.35             0.07 
  OR10A2 MUTATED OR10A2 WILD-TYPE 
           63.72            85.32 
  OR10A2 MUTATED OR10A2 WILD-TYPE 
           27.98            12.99 
[1] "15.3 - 63.7 (28.0)" "0.1 - 85.3 (13.0)" 
      TCGA-05-4249       TCGA-05-4250       TCGA-05-4382       TCGA-05-4384 
"OR10A2 WILD-TYPE" "OR10A2 WILD-TYPE" "OR10A2 WILD-TYPE" "OR10A2 WILD-TYPE" 
      TCGA-05-4390       TCGA-05-4396       TCGA-05-4397       TCGA-05-4398 
"OR10A2 WILD-TYPE" "OR10A2 WILD-TYPE" "OR10A2 WILD-TYPE" "OR10A2 WILD-TYPE" 
      TCGA-05-4402       TCGA-05-4405       TCGA-05-4415       TCGA-05-4417 
"OR10A2 WILD-TYPE" "OR10A2 WILD-TYPE" "OR10A2 WILD-TYPE" "OR10A2 WILD-TYPE" 
      TCGA-05-4418       TCGA-05-4420       TCGA-05-4424       TCGA-05-4426 
"OR10A2 WILD-TYPE"   "OR10A2 MUTATED" "OR10A2 WILD-TYPE" "OR10A2 WILD-TYPE" 
      TCGA-05-4427       TCGA-05-4430       TCGA-05-4432       TCGA-05-4433 
  "OR10A2 MUTATED" "OR10A2 WILD-TYPE"   "OR10A2 MUTATED" "OR10A2 WILD-TYPE" 
      TCGA-05-4434       TCGA-05-5420       TCGA-05-5423       TCGA-05-5425 
"OR10A2 WILD-TYPE" "OR10A2 WILD-TYPE" "OR10A2 WILD-TYPE" "OR10A2 WILD-TYPE" 
      TCGA-05-5429       TCGA-05-5715       TCGA-35-3615       TCGA-35-4122 
"OR10A2 WILD-TYPE" "OR10A2 WILD-TYPE" "OR10A2 WILD-TYPE" "OR10A2 WILD-TYPE" 
      TCGA-35-4123       TCGA-35-5375       TCGA-38-4625       TCGA-38-4626 
"OR10A2 WILD-TYPE" "OR10A2 WILD-TYPE" "OR10A2 WILD-TYPE" "OR10A2 WILD-TYPE" 
      TCGA-38-4627       TCGA-38-4628       TCGA-38-4629       TCGA-38-4630 
"OR10A2 WILD-TYPE" "OR10A2 WILD-TYPE" "OR10A2 WILD-TYPE" "OR10A2 WILD-TYPE" 
      TCGA-38-4631       TCGA-38-4632       TCGA-38-6178       TCGA-44-2655 
"OR10A2 WILD-TYPE" "OR10A2 WILD-TYPE" "OR10A2 WILD-TYPE" "OR10A2 WILD-TYPE" 
      TCGA-44-2656       TCGA-44-2657       TCGA-44-2659       TCGA-44-2661 
"OR10A2 WILD-TYPE" "OR10A2 WILD-TYPE" "OR10A2 WILD-TYPE" "OR10A2 WILD-TYPE" 
      TCGA-44-2662       TCGA-44-2665       TCGA-44-2666       TCGA-44-2668 
"OR10A2 WILD-TYPE" "OR10A2 WILD-TYPE" "OR10A2 WILD-TYPE" "OR10A2 WILD-TYPE" 
      TCGA-44-3396       TCGA-44-3398       TCGA-44-3918       TCGA-44-3919 
"OR10A2 WILD-TYPE" "OR10A2 WILD-TYPE" "OR10A2 WILD-TYPE" "OR10A2 WILD-TYPE" 
      TCGA-44-4112       TCGA-44-5643       TCGA-44-5645       TCGA-44-6144 
"OR10A2 WILD-TYPE" "OR10A2 WILD-TYPE" "OR10A2 WILD-TYPE" "OR10A2 WILD-TYPE" 
      TCGA-44-6145       TCGA-44-6146       TCGA-44-6147       TCGA-44-6148 
"OR10A2 WILD-TYPE" "OR10A2 WILD-TYPE" "OR10A2 WILD-TYPE" "OR10A2 WILD-TYPE" 
      TCGA-44-6774       TCGA-44-6775       TCGA-44-6776       TCGA-44-6777 
"OR10A2 WILD-TYPE" "OR10A2 WILD-TYPE"   "OR10A2 MUTATED" "OR10A2 WILD-TYPE" 
      TCGA-44-6778       TCGA-44-6779       TCGA-49-4486       TCGA-49-4487 
"OR10A2 WILD-TYPE" "OR10A2 WILD-TYPE" "OR10A2 WILD-TYPE" "OR10A2 WILD-TYPE" 
      TCGA-49-4488       TCGA-49-4490       TCGA-49-4494       TCGA-49-4501 
"OR10A2 WILD-TYPE" "OR10A2 WILD-TYPE" "OR10A2 WILD-TYPE" "OR10A2 WILD-TYPE" 
      TCGA-49-4505       TCGA-49-4506       TCGA-49-4507       TCGA-49-4510 
"OR10A2 WILD-TYPE" "OR10A2 WILD-TYPE" "OR10A2 WILD-TYPE" "OR10A2 WILD-TYPE" 
      TCGA-49-4512       TCGA-49-4514       TCGA-49-6742       TCGA-49-6743 
"OR10A2 WILD-TYPE" "OR10A2 WILD-TYPE" "OR10A2 WILD-TYPE" "OR10A2 WILD-TYPE" 
      TCGA-49-6744       TCGA-49-6745       TCGA-50-5044       TCGA-50-5045 
"OR10A2 WILD-TYPE" "OR10A2 WILD-TYPE" "OR10A2 WILD-TYPE" "OR10A2 WILD-TYPE" 
      TCGA-50-5049       TCGA-50-5051       TCGA-50-5055       TCGA-50-5066 
"OR10A2 WILD-TYPE" "OR10A2 WILD-TYPE" "OR10A2 WILD-TYPE" "OR10A2 WILD-TYPE" 
      TCGA-50-5068       TCGA-50-5072       TCGA-50-5930       TCGA-50-5931 
"OR10A2 WILD-TYPE" "OR10A2 WILD-TYPE" "OR10A2 WILD-TYPE" "OR10A2 WILD-TYPE" 
      TCGA-50-5932       TCGA-50-5933       TCGA-50-5935       TCGA-50-5936 
"OR10A2 WILD-TYPE" "OR10A2 WILD-TYPE" "OR10A2 WILD-TYPE" "OR10A2 WILD-TYPE" 
      TCGA-50-5939       TCGA-50-5941       TCGA-50-5942       TCGA-50-5944 
"OR10A2 WILD-TYPE" "OR10A2 WILD-TYPE" "OR10A2 WILD-TYPE" "OR10A2 WILD-TYPE" 
      TCGA-50-5946       TCGA-50-6590       TCGA-50-6591       TCGA-50-6592 
"OR10A2 WILD-TYPE" "OR10A2 WILD-TYPE" "OR10A2 WILD-TYPE" "OR10A2 WILD-TYPE" 
      TCGA-50-6593       TCGA-50-6594       TCGA-50-6595       TCGA-50-6597 
"OR10A2 WILD-TYPE" "OR10A2 WILD-TYPE" "OR10A2 WILD-TYPE" "OR10A2 WILD-TYPE" 
      TCGA-55-1592       TCGA-55-1594       TCGA-55-1595       TCGA-55-1596 
"OR10A2 WILD-TYPE" "OR10A2 WILD-TYPE" "OR10A2 WILD-TYPE" "OR10A2 WILD-TYPE" 
      TCGA-55-5899       TCGA-55-6543       TCGA-55-6642       TCGA-55-6712 
"OR10A2 WILD-TYPE" "OR10A2 WILD-TYPE" "OR10A2 WILD-TYPE" "OR10A2 WILD-TYPE" 
      TCGA-64-1676       TCGA-64-1677       TCGA-64-1678       TCGA-64-1680 
"OR10A2 WILD-TYPE" "OR10A2 WILD-TYPE" "OR10A2 WILD-TYPE" "OR10A2 WILD-TYPE" 
      TCGA-64-5774       TCGA-64-5775       TCGA-64-5778       TCGA-64-5779 
"OR10A2 WILD-TYPE" "OR10A2 WILD-TYPE" "OR10A2 WILD-TYPE" "OR10A2 WILD-TYPE" 
      TCGA-64-5781       TCGA-64-5815       TCGA-67-3770       TCGA-67-3771 
"OR10A2 WILD-TYPE" "OR10A2 WILD-TYPE" "OR10A2 WILD-TYPE" "OR10A2 WILD-TYPE" 
      TCGA-67-3772       TCGA-67-3773       TCGA-67-3774       TCGA-67-6215 
"OR10A2 WILD-TYPE" "OR10A2 WILD-TYPE" "OR10A2 WILD-TYPE" "OR10A2 WILD-TYPE" 
      TCGA-67-6216       TCGA-67-6217       TCGA-71-6725       TCGA-73-4658 
"OR10A2 WILD-TYPE" "OR10A2 WILD-TYPE" "OR10A2 WILD-TYPE" "OR10A2 WILD-TYPE" 
      TCGA-73-4659       TCGA-73-4662       TCGA-73-4666       TCGA-73-4668 
"OR10A2 WILD-TYPE" "OR10A2 WILD-TYPE" "OR10A2 WILD-TYPE"   "OR10A2 MUTATED" 
      TCGA-73-4670       TCGA-73-4675       TCGA-73-4676       TCGA-73-4677 
"OR10A2 WILD-TYPE" "OR10A2 WILD-TYPE" "OR10A2 WILD-TYPE" "OR10A2 WILD-TYPE" 
      TCGA-91-6828       TCGA-91-6829       TCGA-91-6831       TCGA-91-6835 
"OR10A2 WILD-TYPE"   "OR10A2 MUTATED" "OR10A2 WILD-TYPE" "OR10A2 WILD-TYPE" 
      TCGA-91-6836 
"OR10A2 WILD-TYPE" 
      TCGA-05-4249       TCGA-05-4250       TCGA-05-4382       TCGA-05-4384 
"OR10A2 WILD-TYPE" "OR10A2 WILD-TYPE" "OR10A2 WILD-TYPE" "OR10A2 WILD-TYPE" 
      TCGA-05-4390       TCGA-05-4396       TCGA-05-4397       TCGA-05-4398 
"OR10A2 WILD-TYPE" "OR10A2 WILD-TYPE" "OR10A2 WILD-TYPE" "OR10A2 WILD-TYPE" 
      TCGA-05-4402       TCGA-05-4405       TCGA-05-4415       TCGA-05-4417 
"OR10A2 WILD-TYPE" "OR10A2 WILD-TYPE" "OR10A2 WILD-TYPE" "OR10A2 WILD-TYPE" 
      TCGA-05-4418       TCGA-05-4420       TCGA-05-4424       TCGA-05-4426 
"OR10A2 WILD-TYPE"   "OR10A2 MUTATED" "OR10A2 WILD-TYPE" "OR10A2 WILD-TYPE" 
      TCGA-05-4427       TCGA-05-4430       TCGA-05-4432       TCGA-05-4433 
  "OR10A2 MUTATED" "OR10A2 WILD-TYPE"   "OR10A2 MUTATED" "OR10A2 WILD-TYPE" 
      TCGA-05-4434       TCGA-05-5420       TCGA-05-5423       TCGA-05-5425 
"OR10A2 WILD-TYPE" "OR10A2 WILD-TYPE" "OR10A2 WILD-TYPE" "OR10A2 WILD-TYPE" 
      TCGA-05-5429       TCGA-05-5715       TCGA-35-3615       TCGA-35-4122 
"OR10A2 WILD-TYPE" "OR10A2 WILD-TYPE" "OR10A2 WILD-TYPE" "OR10A2 WILD-TYPE" 
      TCGA-35-4123       TCGA-35-5375       TCGA-38-4625       TCGA-38-4626 
"OR10A2 WILD-TYPE" "OR10A2 WILD-TYPE" "OR10A2 WILD-TYPE" "OR10A2 WILD-TYPE" 
      TCGA-38-4627       TCGA-38-4628       TCGA-38-4629       TCGA-38-4630 
"OR10A2 WILD-TYPE" "OR10A2 WILD-TYPE" "OR10A2 WILD-TYPE" "OR10A2 WILD-TYPE" 
      TCGA-38-4631       TCGA-38-4632       TCGA-38-6178       TCGA-44-2655 
"OR10A2 WILD-TYPE" "OR10A2 WILD-TYPE" "OR10A2 WILD-TYPE" "OR10A2 WILD-TYPE" 
      TCGA-44-2656       TCGA-44-2657       TCGA-44-2659       TCGA-44-2661 
"OR10A2 WILD-TYPE" "OR10A2 WILD-TYPE" "OR10A2 WILD-TYPE" "OR10A2 WILD-TYPE" 
      TCGA-44-2662       TCGA-44-2665       TCGA-44-2666       TCGA-44-2668 
"OR10A2 WILD-TYPE" "OR10A2 WILD-TYPE" "OR10A2 WILD-TYPE" "OR10A2 WILD-TYPE" 
      TCGA-44-3396       TCGA-44-3398       TCGA-44-3918       TCGA-44-3919 
"OR10A2 WILD-TYPE" "OR10A2 WILD-TYPE" "OR10A2 WILD-TYPE" "OR10A2 WILD-TYPE" 
      TCGA-44-4112       TCGA-44-5643       TCGA-44-5645       TCGA-44-6144 
"OR10A2 WILD-TYPE" "OR10A2 WILD-TYPE" "OR10A2 WILD-TYPE" "OR10A2 WILD-TYPE" 
      TCGA-44-6145       TCGA-44-6146       TCGA-44-6147       TCGA-44-6148 
"OR10A2 WILD-TYPE" "OR10A2 WILD-TYPE" "OR10A2 WILD-TYPE" "OR10A2 WILD-TYPE" 
      TCGA-44-6774       TCGA-44-6775       TCGA-44-6776       TCGA-44-6777 
"OR10A2 WILD-TYPE" "OR10A2 WILD-TYPE"   "OR10A2 MUTATED" "OR10A2 WILD-TYPE" 
      TCGA-44-6778       TCGA-44-6779       TCGA-49-4486       TCGA-49-4487 
"OR10A2 WILD-TYPE" "OR10A2 WILD-TYPE" "OR10A2 WILD-TYPE" "OR10A2 WILD-TYPE" 
      TCGA-49-4488       TCGA-49-4490       TCGA-49-4494       TCGA-49-4501 
"OR10A2 WILD-TYPE" "OR10A2 WILD-TYPE" "OR10A2 WILD-TYPE" "OR10A2 WILD-TYPE" 
      TCGA-49-4505       TCGA-49-4506       TCGA-49-4507       TCGA-49-4510 
"OR10A2 WILD-TYPE" "OR10A2 WILD-TYPE" "OR10A2 WILD-TYPE" "OR10A2 WILD-TYPE" 
      TCGA-49-4512       TCGA-49-4514       TCGA-49-6742       TCGA-49-6743 
"OR10A2 WILD-TYPE" "OR10A2 WILD-TYPE" "OR10A2 WILD-TYPE" "OR10A2 WILD-TYPE" 
      TCGA-49-6744       TCGA-49-6745       TCGA-50-5044       TCGA-50-5045 
"OR10A2 WILD-TYPE" "OR10A2 WILD-TYPE" "OR10A2 WILD-TYPE" "OR10A2 WILD-TYPE" 
      TCGA-50-5049       TCGA-50-5051       TCGA-50-5055       TCGA-50-5066 
"OR10A2 WILD-TYPE" "OR10A2 WILD-TYPE" "OR10A2 WILD-TYPE" "OR10A2 WILD-TYPE" 
      TCGA-50-5068       TCGA-50-5072       TCGA-50-5930       TCGA-50-5931 
"OR10A2 WILD-TYPE" "OR10A2 WILD-TYPE" "OR10A2 WILD-TYPE" "OR10A2 WILD-TYPE" 
      TCGA-50-5932       TCGA-50-5933       TCGA-50-5935       TCGA-50-5936 
"OR10A2 WILD-TYPE" "OR10A2 WILD-TYPE" "OR10A2 WILD-TYPE" "OR10A2 WILD-TYPE" 
      TCGA-50-5939       TCGA-50-5941       TCGA-50-5942       TCGA-50-5944 
"OR10A2 WILD-TYPE" "OR10A2 WILD-TYPE" "OR10A2 WILD-TYPE" "OR10A2 WILD-TYPE" 
      TCGA-50-5946       TCGA-50-6590       TCGA-50-6591       TCGA-50-6592 
"OR10A2 WILD-TYPE" "OR10A2 WILD-TYPE" "OR10A2 WILD-TYPE" "OR10A2 WILD-TYPE" 
      TCGA-50-6593       TCGA-50-6594       TCGA-50-6595       TCGA-50-6597 
"OR10A2 WILD-TYPE" "OR10A2 WILD-TYPE" "OR10A2 WILD-TYPE" "OR10A2 WILD-TYPE" 
      TCGA-55-1592       TCGA-55-1594       TCGA-55-1595       TCGA-55-1596 
"OR10A2 WILD-TYPE" "OR10A2 WILD-TYPE" "OR10A2 WILD-TYPE" "OR10A2 WILD-TYPE" 
      TCGA-55-5899       TCGA-55-6543       TCGA-55-6642       TCGA-55-6712 
"OR10A2 WILD-TYPE" "OR10A2 WILD-TYPE" "OR10A2 WILD-TYPE" "OR10A2 WILD-TYPE" 
      TCGA-64-1676       TCGA-64-1677       TCGA-64-1678       TCGA-64-1680 
"OR10A2 WILD-TYPE" "OR10A2 WILD-TYPE" "OR10A2 WILD-TYPE" "OR10A2 WILD-TYPE" 
      TCGA-64-5774       TCGA-64-5775       TCGA-64-5778       TCGA-64-5779 
"OR10A2 WILD-TYPE" "OR10A2 WILD-TYPE" "OR10A2 WILD-TYPE" "OR10A2 WILD-TYPE" 
      TCGA-64-5781       TCGA-64-5815       TCGA-67-3770       TCGA-67-3771 
"OR10A2 WILD-TYPE" "OR10A2 WILD-TYPE" "OR10A2 WILD-TYPE" "OR10A2 WILD-TYPE" 
      TCGA-67-3772       TCGA-67-3773       TCGA-67-3774       TCGA-67-6215 
"OR10A2 WILD-TYPE" "OR10A2 WILD-TYPE" "OR10A2 WILD-TYPE" "OR10A2 WILD-TYPE" 
      TCGA-67-6216       TCGA-67-6217       TCGA-71-6725       TCGA-73-4658 
"OR10A2 WILD-TYPE" "OR10A2 WILD-TYPE" "OR10A2 WILD-TYPE" "OR10A2 WILD-TYPE" 
      TCGA-73-4659       TCGA-73-4662       TCGA-73-4666       TCGA-73-4668 
"OR10A2 WILD-TYPE" "OR10A2 WILD-TYPE" "OR10A2 WILD-TYPE"   "OR10A2 MUTATED" 
      TCGA-73-4670       TCGA-73-4675       TCGA-73-4676       TCGA-73-4677 
"OR10A2 WILD-TYPE" "OR10A2 WILD-TYPE" "OR10A2 WILD-TYPE" "OR10A2 WILD-TYPE" 
      TCGA-91-6828       TCGA-91-6829       TCGA-91-6831       TCGA-91-6835 
"OR10A2 WILD-TYPE"   "OR10A2 MUTATED" "OR10A2 WILD-TYPE" "OR10A2 WILD-TYPE" 
      TCGA-91-6836 
"OR10A2 WILD-TYPE" 
      TCGA-05-4249       TCGA-05-4250       TCGA-05-4382       TCGA-05-4384 
"OR10A2 WILD-TYPE" "OR10A2 WILD-TYPE" "OR10A2 WILD-TYPE" "OR10A2 WILD-TYPE" 
      TCGA-05-4390       TCGA-05-4396       TCGA-05-4397       TCGA-05-4398 
"OR10A2 WILD-TYPE" "OR10A2 WILD-TYPE" "OR10A2 WILD-TYPE" "OR10A2 WILD-TYPE" 
      TCGA-05-4402       TCGA-05-4405       TCGA-05-4415       TCGA-05-4417 
"OR10A2 WILD-TYPE" "OR10A2 WILD-TYPE" "OR10A2 WILD-TYPE" "OR10A2 WILD-TYPE" 
      TCGA-05-4418       TCGA-05-4420       TCGA-05-4424       TCGA-05-4426 
"OR10A2 WILD-TYPE"   "OR10A2 MUTATED" "OR10A2 WILD-TYPE" "OR10A2 WILD-TYPE" 
      TCGA-05-4427       TCGA-05-4430       TCGA-05-4432       TCGA-05-4433 
  "OR10A2 MUTATED" "OR10A2 WILD-TYPE"   "OR10A2 MUTATED" "OR10A2 WILD-TYPE" 
      TCGA-05-4434       TCGA-05-5420       TCGA-05-5423       TCGA-05-5425 
"OR10A2 WILD-TYPE" "OR10A2 WILD-TYPE" "OR10A2 WILD-TYPE" "OR10A2 WILD-TYPE" 
      TCGA-05-5429       TCGA-05-5715       TCGA-35-3615       TCGA-35-4122 
"OR10A2 WILD-TYPE" "OR10A2 WILD-TYPE" "OR10A2 WILD-TYPE" "OR10A2 WILD-TYPE" 
      TCGA-35-4123       TCGA-35-5375       TCGA-38-4625       TCGA-38-4626 
"OR10A2 WILD-TYPE" "OR10A2 WILD-TYPE" "OR10A2 WILD-TYPE" "OR10A2 WILD-TYPE" 
      TCGA-38-4627       TCGA-38-4628       TCGA-38-4629       TCGA-38-4630 
"OR10A2 WILD-TYPE" "OR10A2 WILD-TYPE" "OR10A2 WILD-TYPE" "OR10A2 WILD-TYPE" 
      TCGA-38-4631       TCGA-38-4632       TCGA-38-6178       TCGA-44-2655 
"OR10A2 WILD-TYPE" "OR10A2 WILD-TYPE" "OR10A2 WILD-TYPE" "OR10A2 WILD-TYPE" 
      TCGA-44-2656       TCGA-44-2657       TCGA-44-2659       TCGA-44-2661 
"OR10A2 WILD-TYPE" "OR10A2 WILD-TYPE" "OR10A2 WILD-TYPE" "OR10A2 WILD-TYPE" 
      TCGA-44-2662       TCGA-44-2665       TCGA-44-2666       TCGA-44-2668 
"OR10A2 WILD-TYPE" "OR10A2 WILD-TYPE" "OR10A2 WILD-TYPE" "OR10A2 WILD-TYPE" 
      TCGA-44-3396       TCGA-44-3398       TCGA-44-3918       TCGA-44-3919 
"OR10A2 WILD-TYPE" "OR10A2 WILD-TYPE" "OR10A2 WILD-TYPE" "OR10A2 WILD-TYPE" 
      TCGA-44-4112       TCGA-44-5643       TCGA-44-5645       TCGA-44-6144 
"OR10A2 WILD-TYPE" "OR10A2 WILD-TYPE" "OR10A2 WILD-TYPE" "OR10A2 WILD-TYPE" 
      TCGA-44-6145       TCGA-44-6146       TCGA-44-6147       TCGA-44-6148 
"OR10A2 WILD-TYPE" "OR10A2 WILD-TYPE" "OR10A2 WILD-TYPE" "OR10A2 WILD-TYPE" 
      TCGA-44-6774       TCGA-44-6775       TCGA-44-6776       TCGA-44-6777 
"OR10A2 WILD-TYPE" "OR10A2 WILD-TYPE"   "OR10A2 MUTATED" "OR10A2 WILD-TYPE" 
      TCGA-44-6778       TCGA-44-6779       TCGA-49-4486       TCGA-49-4487 
"OR10A2 WILD-TYPE" "OR10A2 WILD-TYPE" "OR10A2 WILD-TYPE" "OR10A2 WILD-TYPE" 
      TCGA-49-4488       TCGA-49-4490       TCGA-49-4494       TCGA-49-4501 
"OR10A2 WILD-TYPE" "OR10A2 WILD-TYPE" "OR10A2 WILD-TYPE" "OR10A2 WILD-TYPE" 
      TCGA-49-4505       TCGA-49-4506       TCGA-49-4507       TCGA-49-4510 
"OR10A2 WILD-TYPE" "OR10A2 WILD-TYPE" "OR10A2 WILD-TYPE" "OR10A2 WILD-TYPE" 
      TCGA-49-4512       TCGA-49-4514       TCGA-49-6742       TCGA-49-6743 
"OR10A2 WILD-TYPE" "OR10A2 WILD-TYPE" "OR10A2 WILD-TYPE" "OR10A2 WILD-TYPE" 
      TCGA-49-6744       TCGA-49-6745       TCGA-50-5044       TCGA-50-5045 
"OR10A2 WILD-TYPE" "OR10A2 WILD-TYPE" "OR10A2 WILD-TYPE" "OR10A2 WILD-TYPE" 
      TCGA-50-5049       TCGA-50-5051       TCGA-50-5055       TCGA-50-5066 
"OR10A2 WILD-TYPE" "OR10A2 WILD-TYPE" "OR10A2 WILD-TYPE" "OR10A2 WILD-TYPE" 
      TCGA-50-5068       TCGA-50-5072       TCGA-50-5930       TCGA-50-5931 
"OR10A2 WILD-TYPE" "OR10A2 WILD-TYPE" "OR10A2 WILD-TYPE" "OR10A2 WILD-TYPE" 
      TCGA-50-5932       TCGA-50-5933       TCGA-50-5935       TCGA-50-5936 
"OR10A2 WILD-TYPE" "OR10A2 WILD-TYPE" "OR10A2 WILD-TYPE" "OR10A2 WILD-TYPE" 
      TCGA-50-5939       TCGA-50-5941       TCGA-50-5942       TCGA-50-5944 
"OR10A2 WILD-TYPE" "OR10A2 WILD-TYPE" "OR10A2 WILD-TYPE" "OR10A2 WILD-TYPE" 
      TCGA-50-5946       TCGA-50-6590       TCGA-50-6591       TCGA-50-6592 
"OR10A2 WILD-TYPE" "OR10A2 WILD-TYPE" "OR10A2 WILD-TYPE" "OR10A2 WILD-TYPE" 
      TCGA-50-6593       TCGA-50-6594       TCGA-50-6595       TCGA-50-6597 
"OR10A2 WILD-TYPE" "OR10A2 WILD-TYPE" "OR10A2 WILD-TYPE" "OR10A2 WILD-TYPE" 
      TCGA-55-1592       TCGA-55-1594       TCGA-55-1595       TCGA-55-1596 
"OR10A2 WILD-TYPE" "OR10A2 WILD-TYPE" "OR10A2 WILD-TYPE" "OR10A2 WILD-TYPE" 
      TCGA-55-5899       TCGA-55-6543       TCGA-55-6642       TCGA-55-6712 
"OR10A2 WILD-TYPE" "OR10A2 WILD-TYPE" "OR10A2 WILD-TYPE" "OR10A2 WILD-TYPE" 
      TCGA-64-1676       TCGA-64-1677       TCGA-64-1678       TCGA-64-1680 
"OR10A2 WILD-TYPE" "OR10A2 WILD-TYPE" "OR10A2 WILD-TYPE" "OR10A2 WILD-TYPE" 
      TCGA-64-5774       TCGA-64-5775       TCGA-64-5778       TCGA-64-5779 
"OR10A2 WILD-TYPE" "OR10A2 WILD-TYPE" "OR10A2 WILD-TYPE" "OR10A2 WILD-TYPE" 
      TCGA-64-5781       TCGA-64-5815       TCGA-67-3770       TCGA-67-3771 
"OR10A2 WILD-TYPE" "OR10A2 WILD-TYPE" "OR10A2 WILD-TYPE" "OR10A2 WILD-TYPE" 
      TCGA-67-3772       TCGA-67-3773       TCGA-67-3774       TCGA-67-6215 
"OR10A2 WILD-TYPE" "OR10A2 WILD-TYPE" "OR10A2 WILD-TYPE" "OR10A2 WILD-TYPE" 
      TCGA-67-6216       TCGA-67-6217       TCGA-71-6725       TCGA-73-4658 
"OR10A2 WILD-TYPE" "OR10A2 WILD-TYPE" "OR10A2 WILD-TYPE" "OR10A2 WILD-TYPE" 
      TCGA-73-4659       TCGA-73-4662       TCGA-73-4666       TCGA-73-4668 
"OR10A2 WILD-TYPE" "OR10A2 WILD-TYPE" "OR10A2 WILD-TYPE"   "OR10A2 MUTATED" 
      TCGA-73-4670       TCGA-73-4675       TCGA-73-4676       TCGA-73-4677 
"OR10A2 WILD-TYPE" "OR10A2 WILD-TYPE" "OR10A2 WILD-TYPE" "OR10A2 WILD-TYPE" 
      TCGA-91-6828       TCGA-91-6829       TCGA-91-6831       TCGA-91-6835 
"OR10A2 WILD-TYPE"   "OR10A2 MUTATED" "OR10A2 WILD-TYPE" "OR10A2 WILD-TYPE" 
      TCGA-91-6836 
"OR10A2 WILD-TYPE" 
[1] "hr=" "3.6"
D127V2, continuous
D127V3, binary
[1] "tbl2"
                  cls
clus               [,1] [,2]
  OR10A2 MUTATED      3    4
  OR10A2 WILD-TYPE   90   75
        clus
vv       OR10A2 MUTATED OR10A2 WILD-TYPE
  FEMALE              3               90
  MALE                4               75
D127V4, continuous
[1] "Remove cluster labels:" "OR10A2 MUTATED"        
clus
  OR10A2 MUTATED OR10A2 WILD-TYPE 
               1               11 
      TCGA-35-4122       TCGA-35-4123       TCGA-35-5375       TCGA-64-1677 
"OR10A2 WILD-TYPE" "OR10A2 WILD-TYPE" "OR10A2 WILD-TYPE" "OR10A2 WILD-TYPE" 
      TCGA-64-5778       TCGA-71-6725       TCGA-73-4659       TCGA-73-4662 
"OR10A2 WILD-TYPE" "OR10A2 WILD-TYPE" "OR10A2 WILD-TYPE" "OR10A2 WILD-TYPE" 
      TCGA-73-4666       TCGA-73-4676       TCGA-75-5122 
"OR10A2 WILD-TYPE" "OR10A2 WILD-TYPE" "OR10A2 WILD-TYPE" 
D127V5, multiclass
D127V6, multiclass
    clus
vv   OR10A2 MUTATED OR10A2 WILD-TYPE
  T1              1               40
  T2              5              103
  T3              1               13
  T4              0                8
D127V7, multiclass
       clus
vv      OR10A2 MUTATED OR10A2 WILD-TYPE
  N0                 4               91
  N1                 3               34
  N2+N3              0               35
D127V8, multiclass
    clus
vv   OR10A2 MUTATED OR10A2 WILD-TYPE
  M0              5              132
  M1              0                9
  MX              2               20
D127V9, multiclass
     clus
vv    OR10A2 MUTATED OR10A2 WILD-TYPE
  I                4               84
  II               3               30
  III              0               39
  IV               0                9
D127V10, binary
[1] "tbl2"
                  cls
clus               [,1] [,2]
  OR10A2 MUTATED      0    7
  OR10A2 WILD-TYPE   16  149
     clus
vv    OR10A2 MUTATED OR10A2 WILD-TYPE
  NO               0               16
  YES              7              149
D127V11, continuous
D127V12, continuous
D127V13, multiclass
                                             clus
vv                                            OR10A2 MUTATED OR10A2 WILD-TYPE
  CURRENT REFORMED SMOKER FOR < OR = 15 YEARS              5               57
  CURRENT REFORMED SMOKER FOR > 15 YEARS                   0               46
  CURRENT SMOKER                                           2               26
  LIFELONG NON-SMOKER                                      0               24
D127V14, continuous

Clustering(128) Variable = OR5D13 MUTATION ANALYSIS
D128V1, survival
                  sevent
clus2               0  1
  OR5D13 MUTATED    2  2
  OR5D13 WILD-TYPE 97 48
  OR5D13 MUTATED OR5D13 WILD-TYPE 
               4              145 
  OR5D13 MUTATED OR5D13 WILD-TYPE 
               2               48 
$`OR5D13 MUTATED`
TCGA-35-4122 TCGA-50-5933 TCGA-50-6590 TCGA-67-6217 
        7.36        77.88        42.31        13.87 

$`OR5D13 WILD-TYPE`
TCGA-05-4249 TCGA-05-4250 TCGA-05-4382 TCGA-05-4384 TCGA-05-4390 TCGA-05-4396 
       38.07         3.98        19.92        14.01        37.02         9.96 
TCGA-05-4397 TCGA-05-4398 TCGA-05-4402 TCGA-05-4405 TCGA-05-4415 TCGA-05-4417 
       24.03        47.05         8.02        20.05         2.96        14.93 
TCGA-05-4418 TCGA-05-4420 TCGA-05-4424 TCGA-05-4426 TCGA-05-4427 TCGA-05-4430 
        8.98        29.95        30.02        26.01        26.01        25.02 
TCGA-05-4432 TCGA-05-4433 TCGA-05-4434 TCGA-05-5420 TCGA-05-5423 TCGA-05-5425 
       25.02        24.00        15.02         1.02         4.96         2.96 
TCGA-05-5429 TCGA-05-5715 TCGA-35-3615 TCGA-35-4123 TCGA-35-5375 TCGA-38-4625 
        0.99         2.04         0.46         5.95         8.68        47.61 
TCGA-38-4626 TCGA-38-4627 TCGA-38-4628 TCGA-38-4629 TCGA-38-4630 TCGA-38-4631 
       85.32        37.71        49.02        28.37        35.28        11.64 
TCGA-38-4632 TCGA-38-6178 TCGA-44-2655 TCGA-44-2656 TCGA-44-2657 TCGA-44-2659 
       44.61         5.19        18.87        19.10        13.15        17.39 
TCGA-44-2661 TCGA-44-2662 TCGA-44-2665 TCGA-44-2666 TCGA-44-2668 TCGA-44-3396 
        3.39        15.78        13.15         3.19         8.09        10.22 
TCGA-44-3398 TCGA-44-3918 TCGA-44-3919 TCGA-44-4112 TCGA-44-5643 TCGA-44-5645 
        8.32         6.44         6.21         4.60         3.48         6.84 
TCGA-44-6144 TCGA-44-6145 TCGA-44-6146 TCGA-44-6147 TCGA-44-6148 TCGA-44-6774 
        0.30         3.35         9.93         7.76         3.12         5.42 
TCGA-44-6775 TCGA-44-6776 TCGA-44-6777 TCGA-44-6778 TCGA-44-6779 TCGA-49-4486 
        2.70        63.72        32.45        36.49        16.41        76.21 
TCGA-49-4487 TCGA-49-4488 TCGA-49-4490 TCGA-49-4494 TCGA-49-4501 TCGA-49-4505 
       28.11        28.57        12.66        35.54        46.72        14.07 
TCGA-49-4506 TCGA-49-4507 TCGA-49-4510 TCGA-49-4512 TCGA-49-4514 TCGA-49-6742 
       32.84         8.81        29.46        29.75        43.20        15.02 
TCGA-49-6743 TCGA-49-6744 TCGA-49-6745 TCGA-50-5044 TCGA-50-5045 TCGA-50-5049 
       12.13        12.99         4.93        20.48        71.47        48.82 
TCGA-50-5051 TCGA-50-5055 TCGA-50-5066 TCGA-50-5068 TCGA-50-5072 TCGA-50-5930 
       14.96        25.81         9.76        49.28         8.05         9.27 
TCGA-50-5931 TCGA-50-5932 TCGA-50-5935 TCGA-50-5936 TCGA-50-5939 TCGA-50-5941 
        8.78        35.87        21.47         8.45        15.12         9.37 
TCGA-50-5942 TCGA-50-5944 TCGA-50-5946 TCGA-50-6591 TCGA-50-6592 TCGA-50-6593 
        4.44        12.26        11.47         3.88        25.51        11.05 
TCGA-50-6594 TCGA-50-6595 TCGA-50-6597 TCGA-55-1592 TCGA-55-1594 TCGA-55-1595 
       12.16         6.21        33.37        23.05        38.73        48.62 
TCGA-55-1596 TCGA-55-5899 TCGA-55-6543 TCGA-55-6642 TCGA-55-6712 TCGA-64-1676 
       45.17         2.86         0.07        32.61         0.79        56.81 
TCGA-64-1677 TCGA-64-1678 TCGA-64-1680 TCGA-64-5774 TCGA-64-5775 TCGA-64-5778 
       20.65        39.09        37.02        83.84         0.10        30.44 
TCGA-64-5779 TCGA-64-5781 TCGA-64-5815 TCGA-67-3770 TCGA-67-3771 TCGA-67-3772 
       16.67        39.52         7.33         0.99         1.97         0.59 
TCGA-67-3773 TCGA-67-3774 TCGA-67-6215 TCGA-67-6216 TCGA-71-6725 TCGA-73-4658 
        2.04         0.59         0.89         0.69         2.01        52.57 
TCGA-73-4659 TCGA-73-4662 TCGA-73-4666 TCGA-73-4668 TCGA-73-4670 TCGA-73-4675 
       23.38        29.95        20.28        15.35         0.46         1.32 
TCGA-73-4676 TCGA-73-4677 TCGA-91-6828 TCGA-91-6829 TCGA-91-6831 TCGA-91-6835 
        4.01         1.25         1.22        41.33         1.28         1.15 
TCGA-91-6836 
        0.36 

  OR5D13 MUTATED OR5D13 WILD-TYPE 
            7.36             0.07 
  OR5D13 MUTATED OR5D13 WILD-TYPE 
           77.88            85.32 
  OR5D13 MUTATED OR5D13 WILD-TYPE 
           28.09            13.15 
[1] "7.4 - 77.9 (28.1)" "0.1 - 85.3 (13.2)"
      TCGA-05-4249       TCGA-05-4250       TCGA-05-4382       TCGA-05-4384 
"OR5D13 WILD-TYPE" "OR5D13 WILD-TYPE" "OR5D13 WILD-TYPE" "OR5D13 WILD-TYPE" 
      TCGA-05-4390       TCGA-05-4396       TCGA-05-4397       TCGA-05-4398 
"OR5D13 WILD-TYPE" "OR5D13 WILD-TYPE" "OR5D13 WILD-TYPE" "OR5D13 WILD-TYPE" 
      TCGA-05-4402       TCGA-05-4405       TCGA-05-4415       TCGA-05-4417 
"OR5D13 WILD-TYPE" "OR5D13 WILD-TYPE" "OR5D13 WILD-TYPE" "OR5D13 WILD-TYPE" 
      TCGA-05-4418       TCGA-05-4420       TCGA-05-4424       TCGA-05-4426 
"OR5D13 WILD-TYPE" "OR5D13 WILD-TYPE" "OR5D13 WILD-TYPE" "OR5D13 WILD-TYPE" 
      TCGA-05-4427       TCGA-05-4430       TCGA-05-4432       TCGA-05-4433 
"OR5D13 WILD-TYPE" "OR5D13 WILD-TYPE" "OR5D13 WILD-TYPE" "OR5D13 WILD-TYPE" 
      TCGA-05-4434       TCGA-05-5420       TCGA-05-5423       TCGA-05-5425 
"OR5D13 WILD-TYPE" "OR5D13 WILD-TYPE" "OR5D13 WILD-TYPE" "OR5D13 WILD-TYPE" 
      TCGA-05-5429       TCGA-05-5715       TCGA-35-3615       TCGA-35-4122 
"OR5D13 WILD-TYPE" "OR5D13 WILD-TYPE" "OR5D13 WILD-TYPE"   "OR5D13 MUTATED" 
      TCGA-35-4123       TCGA-35-5375       TCGA-38-4625       TCGA-38-4626 
"OR5D13 WILD-TYPE" "OR5D13 WILD-TYPE" "OR5D13 WILD-TYPE" "OR5D13 WILD-TYPE" 
      TCGA-38-4627       TCGA-38-4628       TCGA-38-4629       TCGA-38-4630 
"OR5D13 WILD-TYPE" "OR5D13 WILD-TYPE" "OR5D13 WILD-TYPE" "OR5D13 WILD-TYPE" 
      TCGA-38-4631       TCGA-38-4632       TCGA-38-6178       TCGA-44-2655 
"OR5D13 WILD-TYPE" "OR5D13 WILD-TYPE" "OR5D13 WILD-TYPE" "OR5D13 WILD-TYPE" 
      TCGA-44-2656       TCGA-44-2657       TCGA-44-2659       TCGA-44-2661 
"OR5D13 WILD-TYPE" "OR5D13 WILD-TYPE" "OR5D13 WILD-TYPE" "OR5D13 WILD-TYPE" 
      TCGA-44-2662       TCGA-44-2665       TCGA-44-2666       TCGA-44-2668 
"OR5D13 WILD-TYPE" "OR5D13 WILD-TYPE" "OR5D13 WILD-TYPE" "OR5D13 WILD-TYPE" 
      TCGA-44-3396       TCGA-44-3398       TCGA-44-3918       TCGA-44-3919 
"OR5D13 WILD-TYPE" "OR5D13 WILD-TYPE" "OR5D13 WILD-TYPE" "OR5D13 WILD-TYPE" 
      TCGA-44-4112       TCGA-44-5643       TCGA-44-5645       TCGA-44-6144 
"OR5D13 WILD-TYPE" "OR5D13 WILD-TYPE" "OR5D13 WILD-TYPE" "OR5D13 WILD-TYPE" 
      TCGA-44-6145       TCGA-44-6146       TCGA-44-6147       TCGA-44-6148 
"OR5D13 WILD-TYPE" "OR5D13 WILD-TYPE" "OR5D13 WILD-TYPE" "OR5D13 WILD-TYPE" 
      TCGA-44-6774       TCGA-44-6775       TCGA-44-6776       TCGA-44-6777 
"OR5D13 WILD-TYPE" "OR5D13 WILD-TYPE" "OR5D13 WILD-TYPE" "OR5D13 WILD-TYPE" 
      TCGA-44-6778       TCGA-44-6779       TCGA-49-4486       TCGA-49-4487 
"OR5D13 WILD-TYPE" "OR5D13 WILD-TYPE" "OR5D13 WILD-TYPE" "OR5D13 WILD-TYPE" 
      TCGA-49-4488       TCGA-49-4490       TCGA-49-4494       TCGA-49-4501 
"OR5D13 WILD-TYPE" "OR5D13 WILD-TYPE" "OR5D13 WILD-TYPE" "OR5D13 WILD-TYPE" 
      TCGA-49-4505       TCGA-49-4506       TCGA-49-4507       TCGA-49-4510 
"OR5D13 WILD-TYPE" "OR5D13 WILD-TYPE" "OR5D13 WILD-TYPE" "OR5D13 WILD-TYPE" 
      TCGA-49-4512       TCGA-49-4514       TCGA-49-6742       TCGA-49-6743 
"OR5D13 WILD-TYPE" "OR5D13 WILD-TYPE" "OR5D13 WILD-TYPE" "OR5D13 WILD-TYPE" 
      TCGA-49-6744       TCGA-49-6745       TCGA-50-5044       TCGA-50-5045 
"OR5D13 WILD-TYPE" "OR5D13 WILD-TYPE" "OR5D13 WILD-TYPE" "OR5D13 WILD-TYPE" 
      TCGA-50-5049       TCGA-50-5051       TCGA-50-5055       TCGA-50-5066 
"OR5D13 WILD-TYPE" "OR5D13 WILD-TYPE" "OR5D13 WILD-TYPE" "OR5D13 WILD-TYPE" 
      TCGA-50-5068       TCGA-50-5072       TCGA-50-5930       TCGA-50-5931 
"OR5D13 WILD-TYPE" "OR5D13 WILD-TYPE" "OR5D13 WILD-TYPE" "OR5D13 WILD-TYPE" 
      TCGA-50-5932       TCGA-50-5933       TCGA-50-5935       TCGA-50-5936 
"OR5D13 WILD-TYPE"   "OR5D13 MUTATED" "OR5D13 WILD-TYPE" "OR5D13 WILD-TYPE" 
      TCGA-50-5939       TCGA-50-5941       TCGA-50-5942       TCGA-50-5944 
"OR5D13 WILD-TYPE" "OR5D13 WILD-TYPE" "OR5D13 WILD-TYPE" "OR5D13 WILD-TYPE" 
      TCGA-50-5946       TCGA-50-6590       TCGA-50-6591       TCGA-50-6592 
"OR5D13 WILD-TYPE"   "OR5D13 MUTATED" "OR5D13 WILD-TYPE" "OR5D13 WILD-TYPE" 
      TCGA-50-6593       TCGA-50-6594       TCGA-50-6595       TCGA-50-6597 
"OR5D13 WILD-TYPE" "OR5D13 WILD-TYPE" "OR5D13 WILD-TYPE" "OR5D13 WILD-TYPE" 
      TCGA-55-1592       TCGA-55-1594       TCGA-55-1595       TCGA-55-1596 
"OR5D13 WILD-TYPE" "OR5D13 WILD-TYPE" "OR5D13 WILD-TYPE" "OR5D13 WILD-TYPE" 
      TCGA-55-5899       TCGA-55-6543       TCGA-55-6642       TCGA-55-6712 
"OR5D13 WILD-TYPE" "OR5D13 WILD-TYPE" "OR5D13 WILD-TYPE" "OR5D13 WILD-TYPE" 
      TCGA-64-1676       TCGA-64-1677       TCGA-64-1678       TCGA-64-1680 
"OR5D13 WILD-TYPE" "OR5D13 WILD-TYPE" "OR5D13 WILD-TYPE" "OR5D13 WILD-TYPE" 
      TCGA-64-5774       TCGA-64-5775       TCGA-64-5778       TCGA-64-5779 
"OR5D13 WILD-TYPE" "OR5D13 WILD-TYPE" "OR5D13 WILD-TYPE" "OR5D13 WILD-TYPE" 
      TCGA-64-5781       TCGA-64-5815       TCGA-67-3770       TCGA-67-3771 
"OR5D13 WILD-TYPE" "OR5D13 WILD-TYPE" "OR5D13 WILD-TYPE" "OR5D13 WILD-TYPE" 
      TCGA-67-3772       TCGA-67-3773       TCGA-67-3774       TCGA-67-6215 
"OR5D13 WILD-TYPE" "OR5D13 WILD-TYPE" "OR5D13 WILD-TYPE" "OR5D13 WILD-TYPE" 
      TCGA-67-6216       TCGA-67-6217       TCGA-71-6725       TCGA-73-4658 
"OR5D13 WILD-TYPE"   "OR5D13 MUTATED" "OR5D13 WILD-TYPE" "OR5D13 WILD-TYPE" 
      TCGA-73-4659       TCGA-73-4662       TCGA-73-4666       TCGA-73-4668 
"OR5D13 WILD-TYPE" "OR5D13 WILD-TYPE" "OR5D13 WILD-TYPE" "OR5D13 WILD-TYPE" 
      TCGA-73-4670       TCGA-73-4675       TCGA-73-4676       TCGA-73-4677 
"OR5D13 WILD-TYPE" "OR5D13 WILD-TYPE" "OR5D13 WILD-TYPE" "OR5D13 WILD-TYPE" 
      TCGA-91-6828       TCGA-91-6829       TCGA-91-6831       TCGA-91-6835 
"OR5D13 WILD-TYPE" "OR5D13 WILD-TYPE" "OR5D13 WILD-TYPE" "OR5D13 WILD-TYPE" 
      TCGA-91-6836 
"OR5D13 WILD-TYPE" 
      TCGA-05-4249       TCGA-05-4250       TCGA-05-4382       TCGA-05-4384 
"OR5D13 WILD-TYPE" "OR5D13 WILD-TYPE" "OR5D13 WILD-TYPE" "OR5D13 WILD-TYPE" 
      TCGA-05-4390       TCGA-05-4396       TCGA-05-4397       TCGA-05-4398 
"OR5D13 WILD-TYPE" "OR5D13 WILD-TYPE" "OR5D13 WILD-TYPE" "OR5D13 WILD-TYPE" 
      TCGA-05-4402       TCGA-05-4405       TCGA-05-4415       TCGA-05-4417 
"OR5D13 WILD-TYPE" "OR5D13 WILD-TYPE" "OR5D13 WILD-TYPE" "OR5D13 WILD-TYPE" 
      TCGA-05-4418       TCGA-05-4420       TCGA-05-4424       TCGA-05-4426 
"OR5D13 WILD-TYPE" "OR5D13 WILD-TYPE" "OR5D13 WILD-TYPE" "OR5D13 WILD-TYPE" 
      TCGA-05-4427       TCGA-05-4430       TCGA-05-4432       TCGA-05-4433 
"OR5D13 WILD-TYPE" "OR5D13 WILD-TYPE" "OR5D13 WILD-TYPE" "OR5D13 WILD-TYPE" 
      TCGA-05-4434       TCGA-05-5420       TCGA-05-5423       TCGA-05-5425 
"OR5D13 WILD-TYPE" "OR5D13 WILD-TYPE" "OR5D13 WILD-TYPE" "OR5D13 WILD-TYPE" 
      TCGA-05-5429       TCGA-05-5715       TCGA-35-3615       TCGA-35-4122 
"OR5D13 WILD-TYPE" "OR5D13 WILD-TYPE" "OR5D13 WILD-TYPE"   "OR5D13 MUTATED" 
      TCGA-35-4123       TCGA-35-5375       TCGA-38-4625       TCGA-38-4626 
"OR5D13 WILD-TYPE" "OR5D13 WILD-TYPE" "OR5D13 WILD-TYPE" "OR5D13 WILD-TYPE" 
      TCGA-38-4627       TCGA-38-4628       TCGA-38-4629       TCGA-38-4630 
"OR5D13 WILD-TYPE" "OR5D13 WILD-TYPE" "OR5D13 WILD-TYPE" "OR5D13 WILD-TYPE" 
      TCGA-38-4631       TCGA-38-4632       TCGA-38-6178       TCGA-44-2655 
"OR5D13 WILD-TYPE" "OR5D13 WILD-TYPE" "OR5D13 WILD-TYPE" "OR5D13 WILD-TYPE" 
      TCGA-44-2656       TCGA-44-2657       TCGA-44-2659       TCGA-44-2661 
"OR5D13 WILD-TYPE" "OR5D13 WILD-TYPE" "OR5D13 WILD-TYPE" "OR5D13 WILD-TYPE" 
      TCGA-44-2662       TCGA-44-2665       TCGA-44-2666       TCGA-44-2668 
"OR5D13 WILD-TYPE" "OR5D13 WILD-TYPE" "OR5D13 WILD-TYPE" "OR5D13 WILD-TYPE" 
      TCGA-44-3396       TCGA-44-3398       TCGA-44-3918       TCGA-44-3919 
"OR5D13 WILD-TYPE" "OR5D13 WILD-TYPE" "OR5D13 WILD-TYPE" "OR5D13 WILD-TYPE" 
      TCGA-44-4112       TCGA-44-5643       TCGA-44-5645       TCGA-44-6144 
"OR5D13 WILD-TYPE" "OR5D13 WILD-TYPE" "OR5D13 WILD-TYPE" "OR5D13 WILD-TYPE" 
      TCGA-44-6145       TCGA-44-6146       TCGA-44-6147       TCGA-44-6148 
"OR5D13 WILD-TYPE" "OR5D13 WILD-TYPE" "OR5D13 WILD-TYPE" "OR5D13 WILD-TYPE" 
      TCGA-44-6774       TCGA-44-6775       TCGA-44-6776       TCGA-44-6777 
"OR5D13 WILD-TYPE" "OR5D13 WILD-TYPE" "OR5D13 WILD-TYPE" "OR5D13 WILD-TYPE" 
      TCGA-44-6778       TCGA-44-6779       TCGA-49-4486       TCGA-49-4487 
"OR5D13 WILD-TYPE" "OR5D13 WILD-TYPE" "OR5D13 WILD-TYPE" "OR5D13 WILD-TYPE" 
      TCGA-49-4488       TCGA-49-4490       TCGA-49-4494       TCGA-49-4501 
"OR5D13 WILD-TYPE" "OR5D13 WILD-TYPE" "OR5D13 WILD-TYPE" "OR5D13 WILD-TYPE" 
      TCGA-49-4505       TCGA-49-4506       TCGA-49-4507       TCGA-49-4510 
"OR5D13 WILD-TYPE" "OR5D13 WILD-TYPE" "OR5D13 WILD-TYPE" "OR5D13 WILD-TYPE" 
      TCGA-49-4512       TCGA-49-4514       TCGA-49-6742       TCGA-49-6743 
"OR5D13 WILD-TYPE" "OR5D13 WILD-TYPE" "OR5D13 WILD-TYPE" "OR5D13 WILD-TYPE" 
      TCGA-49-6744       TCGA-49-6745       TCGA-50-5044       TCGA-50-5045 
"OR5D13 WILD-TYPE" "OR5D13 WILD-TYPE" "OR5D13 WILD-TYPE" "OR5D13 WILD-TYPE" 
      TCGA-50-5049       TCGA-50-5051       TCGA-50-5055       TCGA-50-5066 
"OR5D13 WILD-TYPE" "OR5D13 WILD-TYPE" "OR5D13 WILD-TYPE" "OR5D13 WILD-TYPE" 
      TCGA-50-5068       TCGA-50-5072       TCGA-50-5930       TCGA-50-5931 
"OR5D13 WILD-TYPE" "OR5D13 WILD-TYPE" "OR5D13 WILD-TYPE" "OR5D13 WILD-TYPE" 
      TCGA-50-5932       TCGA-50-5933       TCGA-50-5935       TCGA-50-5936 
"OR5D13 WILD-TYPE"   "OR5D13 MUTATED" "OR5D13 WILD-TYPE" "OR5D13 WILD-TYPE" 
      TCGA-50-5939       TCGA-50-5941       TCGA-50-5942       TCGA-50-5944 
"OR5D13 WILD-TYPE" "OR5D13 WILD-TYPE" "OR5D13 WILD-TYPE" "OR5D13 WILD-TYPE" 
      TCGA-50-5946       TCGA-50-6590       TCGA-50-6591       TCGA-50-6592 
"OR5D13 WILD-TYPE"   "OR5D13 MUTATED" "OR5D13 WILD-TYPE" "OR5D13 WILD-TYPE" 
      TCGA-50-6593       TCGA-50-6594       TCGA-50-6595       TCGA-50-6597 
"OR5D13 WILD-TYPE" "OR5D13 WILD-TYPE" "OR5D13 WILD-TYPE" "OR5D13 WILD-TYPE" 
      TCGA-55-1592       TCGA-55-1594       TCGA-55-1595       TCGA-55-1596 
"OR5D13 WILD-TYPE" "OR5D13 WILD-TYPE" "OR5D13 WILD-TYPE" "OR5D13 WILD-TYPE" 
      TCGA-55-5899       TCGA-55-6543       TCGA-55-6642       TCGA-55-6712 
"OR5D13 WILD-TYPE" "OR5D13 WILD-TYPE" "OR5D13 WILD-TYPE" "OR5D13 WILD-TYPE" 
      TCGA-64-1676       TCGA-64-1677       TCGA-64-1678       TCGA-64-1680 
"OR5D13 WILD-TYPE" "OR5D13 WILD-TYPE" "OR5D13 WILD-TYPE" "OR5D13 WILD-TYPE" 
      TCGA-64-5774       TCGA-64-5775       TCGA-64-5778       TCGA-64-5779 
"OR5D13 WILD-TYPE" "OR5D13 WILD-TYPE" "OR5D13 WILD-TYPE" "OR5D13 WILD-TYPE" 
      TCGA-64-5781       TCGA-64-5815       TCGA-67-3770       TCGA-67-3771 
"OR5D13 WILD-TYPE" "OR5D13 WILD-TYPE" "OR5D13 WILD-TYPE" "OR5D13 WILD-TYPE" 
      TCGA-67-3772       TCGA-67-3773       TCGA-67-3774       TCGA-67-6215 
"OR5D13 WILD-TYPE" "OR5D13 WILD-TYPE" "OR5D13 WILD-TYPE" "OR5D13 WILD-TYPE" 
      TCGA-67-6216       TCGA-67-6217       TCGA-71-6725       TCGA-73-4658 
"OR5D13 WILD-TYPE"   "OR5D13 MUTATED" "OR5D13 WILD-TYPE" "OR5D13 WILD-TYPE" 
      TCGA-73-4659       TCGA-73-4662       TCGA-73-4666       TCGA-73-4668 
"OR5D13 WILD-TYPE" "OR5D13 WILD-TYPE" "OR5D13 WILD-TYPE" "OR5D13 WILD-TYPE" 
      TCGA-73-4670       TCGA-73-4675       TCGA-73-4676       TCGA-73-4677 
"OR5D13 WILD-TYPE" "OR5D13 WILD-TYPE" "OR5D13 WILD-TYPE" "OR5D13 WILD-TYPE" 
      TCGA-91-6828       TCGA-91-6829       TCGA-91-6831       TCGA-91-6835 
"OR5D13 WILD-TYPE" "OR5D13 WILD-TYPE" "OR5D13 WILD-TYPE" "OR5D13 WILD-TYPE" 
      TCGA-91-6836 
"OR5D13 WILD-TYPE" 
      TCGA-05-4249       TCGA-05-4250       TCGA-05-4382       TCGA-05-4384 
"OR5D13 WILD-TYPE" "OR5D13 WILD-TYPE" "OR5D13 WILD-TYPE" "OR5D13 WILD-TYPE" 
      TCGA-05-4390       TCGA-05-4396       TCGA-05-4397       TCGA-05-4398 
"OR5D13 WILD-TYPE" "OR5D13 WILD-TYPE" "OR5D13 WILD-TYPE" "OR5D13 WILD-TYPE" 
      TCGA-05-4402       TCGA-05-4405       TCGA-05-4415       TCGA-05-4417 
"OR5D13 WILD-TYPE" "OR5D13 WILD-TYPE" "OR5D13 WILD-TYPE" "OR5D13 WILD-TYPE" 
      TCGA-05-4418       TCGA-05-4420       TCGA-05-4424       TCGA-05-4426 
"OR5D13 WILD-TYPE" "OR5D13 WILD-TYPE" "OR5D13 WILD-TYPE" "OR5D13 WILD-TYPE" 
      TCGA-05-4427       TCGA-05-4430       TCGA-05-4432       TCGA-05-4433 
"OR5D13 WILD-TYPE" "OR5D13 WILD-TYPE" "OR5D13 WILD-TYPE" "OR5D13 WILD-TYPE" 
      TCGA-05-4434       TCGA-05-5420       TCGA-05-5423       TCGA-05-5425 
"OR5D13 WILD-TYPE" "OR5D13 WILD-TYPE" "OR5D13 WILD-TYPE" "OR5D13 WILD-TYPE" 
      TCGA-05-5429       TCGA-05-5715       TCGA-35-3615       TCGA-35-4122 
"OR5D13 WILD-TYPE" "OR5D13 WILD-TYPE" "OR5D13 WILD-TYPE"   "OR5D13 MUTATED" 
      TCGA-35-4123       TCGA-35-5375       TCGA-38-4625       TCGA-38-4626 
"OR5D13 WILD-TYPE" "OR5D13 WILD-TYPE" "OR5D13 WILD-TYPE" "OR5D13 WILD-TYPE" 
      TCGA-38-4627       TCGA-38-4628       TCGA-38-4629       TCGA-38-4630 
"OR5D13 WILD-TYPE" "OR5D13 WILD-TYPE" "OR5D13 WILD-TYPE" "OR5D13 WILD-TYPE" 
      TCGA-38-4631       TCGA-38-4632       TCGA-38-6178       TCGA-44-2655 
"OR5D13 WILD-TYPE" "OR5D13 WILD-TYPE" "OR5D13 WILD-TYPE" "OR5D13 WILD-TYPE" 
      TCGA-44-2656       TCGA-44-2657       TCGA-44-2659       TCGA-44-2661 
"OR5D13 WILD-TYPE" "OR5D13 WILD-TYPE" "OR5D13 WILD-TYPE" "OR5D13 WILD-TYPE" 
      TCGA-44-2662       TCGA-44-2665       TCGA-44-2666       TCGA-44-2668 
"OR5D13 WILD-TYPE" "OR5D13 WILD-TYPE" "OR5D13 WILD-TYPE" "OR5D13 WILD-TYPE" 
      TCGA-44-3396       TCGA-44-3398       TCGA-44-3918       TCGA-44-3919 
"OR5D13 WILD-TYPE" "OR5D13 WILD-TYPE" "OR5D13 WILD-TYPE" "OR5D13 WILD-TYPE" 
      TCGA-44-4112       TCGA-44-5643       TCGA-44-5645       TCGA-44-6144 
"OR5D13 WILD-TYPE" "OR5D13 WILD-TYPE" "OR5D13 WILD-TYPE" "OR5D13 WILD-TYPE" 
      TCGA-44-6145       TCGA-44-6146       TCGA-44-6147       TCGA-44-6148 
"OR5D13 WILD-TYPE" "OR5D13 WILD-TYPE" "OR5D13 WILD-TYPE" "OR5D13 WILD-TYPE" 
      TCGA-44-6774       TCGA-44-6775       TCGA-44-6776       TCGA-44-6777 
"OR5D13 WILD-TYPE" "OR5D13 WILD-TYPE" "OR5D13 WILD-TYPE" "OR5D13 WILD-TYPE" 
      TCGA-44-6778       TCGA-44-6779       TCGA-49-4486       TCGA-49-4487 
"OR5D13 WILD-TYPE" "OR5D13 WILD-TYPE" "OR5D13 WILD-TYPE" "OR5D13 WILD-TYPE" 
      TCGA-49-4488       TCGA-49-4490       TCGA-49-4494       TCGA-49-4501 
"OR5D13 WILD-TYPE" "OR5D13 WILD-TYPE" "OR5D13 WILD-TYPE" "OR5D13 WILD-TYPE" 
      TCGA-49-4505       TCGA-49-4506       TCGA-49-4507       TCGA-49-4510 
"OR5D13 WILD-TYPE" "OR5D13 WILD-TYPE" "OR5D13 WILD-TYPE" "OR5D13 WILD-TYPE" 
      TCGA-49-4512       TCGA-49-4514       TCGA-49-6742       TCGA-49-6743 
"OR5D13 WILD-TYPE" "OR5D13 WILD-TYPE" "OR5D13 WILD-TYPE" "OR5D13 WILD-TYPE" 
      TCGA-49-6744       TCGA-49-6745       TCGA-50-5044       TCGA-50-5045 
"OR5D13 WILD-TYPE" "OR5D13 WILD-TYPE" "OR5D13 WILD-TYPE" "OR5D13 WILD-TYPE" 
      TCGA-50-5049       TCGA-50-5051       TCGA-50-5055       TCGA-50-5066 
"OR5D13 WILD-TYPE" "OR5D13 WILD-TYPE" "OR5D13 WILD-TYPE" "OR5D13 WILD-TYPE" 
      TCGA-50-5068       TCGA-50-5072       TCGA-50-5930       TCGA-50-5931 
"OR5D13 WILD-TYPE" "OR5D13 WILD-TYPE" "OR5D13 WILD-TYPE" "OR5D13 WILD-TYPE" 
      TCGA-50-5932       TCGA-50-5933       TCGA-50-5935       TCGA-50-5936 
"OR5D13 WILD-TYPE"   "OR5D13 MUTATED" "OR5D13 WILD-TYPE" "OR5D13 WILD-TYPE" 
      TCGA-50-5939       TCGA-50-5941       TCGA-50-5942       TCGA-50-5944 
"OR5D13 WILD-TYPE" "OR5D13 WILD-TYPE" "OR5D13 WILD-TYPE" "OR5D13 WILD-TYPE" 
      TCGA-50-5946       TCGA-50-6590       TCGA-50-6591       TCGA-50-6592 
"OR5D13 WILD-TYPE"   "OR5D13 MUTATED" "OR5D13 WILD-TYPE" "OR5D13 WILD-TYPE" 
      TCGA-50-6593       TCGA-50-6594       TCGA-50-6595       TCGA-50-6597 
"OR5D13 WILD-TYPE" "OR5D13 WILD-TYPE" "OR5D13 WILD-TYPE" "OR5D13 WILD-TYPE" 
      TCGA-55-1592       TCGA-55-1594       TCGA-55-1595       TCGA-55-1596 
"OR5D13 WILD-TYPE" "OR5D13 WILD-TYPE" "OR5D13 WILD-TYPE" "OR5D13 WILD-TYPE" 
      TCGA-55-5899       TCGA-55-6543       TCGA-55-6642       TCGA-55-6712 
"OR5D13 WILD-TYPE" "OR5D13 WILD-TYPE" "OR5D13 WILD-TYPE" "OR5D13 WILD-TYPE" 
      TCGA-64-1676       TCGA-64-1677       TCGA-64-1678       TCGA-64-1680 
"OR5D13 WILD-TYPE" "OR5D13 WILD-TYPE" "OR5D13 WILD-TYPE" "OR5D13 WILD-TYPE" 
      TCGA-64-5774       TCGA-64-5775       TCGA-64-5778       TCGA-64-5779 
"OR5D13 WILD-TYPE" "OR5D13 WILD-TYPE" "OR5D13 WILD-TYPE" "OR5D13 WILD-TYPE" 
      TCGA-64-5781       TCGA-64-5815       TCGA-67-3770       TCGA-67-3771 
"OR5D13 WILD-TYPE" "OR5D13 WILD-TYPE" "OR5D13 WILD-TYPE" "OR5D13 WILD-TYPE" 
      TCGA-67-3772       TCGA-67-3773       TCGA-67-3774       TCGA-67-6215 
"OR5D13 WILD-TYPE" "OR5D13 WILD-TYPE" "OR5D13 WILD-TYPE" "OR5D13 WILD-TYPE" 
      TCGA-67-6216       TCGA-67-6217       TCGA-71-6725       TCGA-73-4658 
"OR5D13 WILD-TYPE"   "OR5D13 MUTATED" "OR5D13 WILD-TYPE" "OR5D13 WILD-TYPE" 
      TCGA-73-4659       TCGA-73-4662       TCGA-73-4666       TCGA-73-4668 
"OR5D13 WILD-TYPE" "OR5D13 WILD-TYPE" "OR5D13 WILD-TYPE" "OR5D13 WILD-TYPE" 
      TCGA-73-4670       TCGA-73-4675       TCGA-73-4676       TCGA-73-4677 
"OR5D13 WILD-TYPE" "OR5D13 WILD-TYPE" "OR5D13 WILD-TYPE" "OR5D13 WILD-TYPE" 
      TCGA-91-6828       TCGA-91-6829       TCGA-91-6831       TCGA-91-6835 
"OR5D13 WILD-TYPE" "OR5D13 WILD-TYPE" "OR5D13 WILD-TYPE" "OR5D13 WILD-TYPE" 
      TCGA-91-6836 
"OR5D13 WILD-TYPE" 
[1] "hr=" "1.6"
D128V2, continuous
D128V3, binary
[1] "tbl2"
                  cls
clus               [,1] [,2]
  OR5D13 MUTATED      2    2
  OR5D13 WILD-TYPE   91   77
        clus
vv       OR5D13 MUTATED OR5D13 WILD-TYPE
  FEMALE              2               91
  MALE                2               77
D128V4, continuous
[1] "Remove cluster labels:" "OR5D13 MUTATED"        
clus
  OR5D13 MUTATED OR5D13 WILD-TYPE 
               1               11 
      TCGA-35-4123       TCGA-35-5375       TCGA-64-1677       TCGA-64-5778 
"OR5D13 WILD-TYPE" "OR5D13 WILD-TYPE" "OR5D13 WILD-TYPE" "OR5D13 WILD-TYPE" 
      TCGA-71-6725       TCGA-73-4659       TCGA-73-4662       TCGA-73-4666 
"OR5D13 WILD-TYPE" "OR5D13 WILD-TYPE" "OR5D13 WILD-TYPE" "OR5D13 WILD-TYPE" 
      TCGA-73-4668       TCGA-73-4676       TCGA-75-5122 
"OR5D13 WILD-TYPE" "OR5D13 WILD-TYPE" "OR5D13 WILD-TYPE" 
D128V5, multiclass
D128V6, multiclass
    clus
vv   OR5D13 MUTATED OR5D13 WILD-TYPE
  T1              1               40
  T2              2              106
  T3              0               14
  T4              1                7
D128V7, multiclass
       clus
vv      OR5D13 MUTATED OR5D13 WILD-TYPE
  N0                 2               93
  N1                 1               36
  N2+N3              1               34
D128V8, multiclass
    clus
vv   OR5D13 MUTATED OR5D13 WILD-TYPE
  M0              4              133
  M1              0                9
  MX              0               22
D128V9, multiclass
     clus
vv    OR5D13 MUTATED OR5D13 WILD-TYPE
  I                2               86
  II               1               32
  III              1               38
  IV               0                9
D128V10, binary
[1] "tbl2"
                  cls
clus               [,1] [,2]
  OR5D13 MUTATED      1    3
  OR5D13 WILD-TYPE   15  153
     clus
vv    OR5D13 MUTATED OR5D13 WILD-TYPE
  NO               1               15
  YES              3              153
D128V11, continuous
[1] "Remove cluster labels:" "OR5D13 MUTATED"        
clus
  OR5D13 MUTATED OR5D13 WILD-TYPE 
               2              112 
      TCGA-05-4244       TCGA-05-4249       TCGA-05-4250       TCGA-05-4382 
"OR5D13 WILD-TYPE" "OR5D13 WILD-TYPE" "OR5D13 WILD-TYPE" "OR5D13 WILD-TYPE" 
      TCGA-05-4384       TCGA-05-4389       TCGA-05-4390       TCGA-05-4395 
"OR5D13 WILD-TYPE" "OR5D13 WILD-TYPE" "OR5D13 WILD-TYPE" "OR5D13 WILD-TYPE" 
      TCGA-05-4396       TCGA-05-4397       TCGA-05-4398       TCGA-05-4402 
"OR5D13 WILD-TYPE" "OR5D13 WILD-TYPE" "OR5D13 WILD-TYPE" "OR5D13 WILD-TYPE" 
      TCGA-05-4405       TCGA-05-4410       TCGA-05-4415       TCGA-05-4417 
"OR5D13 WILD-TYPE" "OR5D13 WILD-TYPE" "OR5D13 WILD-TYPE" "OR5D13 WILD-TYPE" 
      TCGA-05-4418       TCGA-05-4420       TCGA-05-4422       TCGA-05-4424 
"OR5D13 WILD-TYPE" "OR5D13 WILD-TYPE" "OR5D13 WILD-TYPE" "OR5D13 WILD-TYPE" 
      TCGA-05-4425       TCGA-05-4426       TCGA-05-4427       TCGA-05-4430 
"OR5D13 WILD-TYPE" "OR5D13 WILD-TYPE" "OR5D13 WILD-TYPE" "OR5D13 WILD-TYPE" 
      TCGA-05-4432       TCGA-05-4433       TCGA-05-4434       TCGA-05-5420 
"OR5D13 WILD-TYPE" "OR5D13 WILD-TYPE" "OR5D13 WILD-TYPE" "OR5D13 WILD-TYPE" 
      TCGA-05-5423       TCGA-05-5425       TCGA-05-5428       TCGA-35-4123 
"OR5D13 WILD-TYPE" "OR5D13 WILD-TYPE" "OR5D13 WILD-TYPE" "OR5D13 WILD-TYPE" 
      TCGA-35-5375       TCGA-38-4625       TCGA-38-4626       TCGA-38-4629 
"OR5D13 WILD-TYPE" "OR5D13 WILD-TYPE" "OR5D13 WILD-TYPE" "OR5D13 WILD-TYPE" 
      TCGA-38-4631       TCGA-38-4632       TCGA-44-2655       TCGA-44-2656 
"OR5D13 WILD-TYPE" "OR5D13 WILD-TYPE" "OR5D13 WILD-TYPE" "OR5D13 WILD-TYPE" 
      TCGA-44-2657       TCGA-44-2659       TCGA-44-2662       TCGA-44-2666 
"OR5D13 WILD-TYPE" "OR5D13 WILD-TYPE" "OR5D13 WILD-TYPE" "OR5D13 WILD-TYPE" 
      TCGA-44-2668       TCGA-44-3396       TCGA-44-3398       TCGA-44-3918 
"OR5D13 WILD-TYPE" "OR5D13 WILD-TYPE" "OR5D13 WILD-TYPE" "OR5D13 WILD-TYPE" 
      TCGA-44-4112       TCGA-44-5643       TCGA-44-5645       TCGA-44-6144 
"OR5D13 WILD-TYPE" "OR5D13 WILD-TYPE" "OR5D13 WILD-TYPE" "OR5D13 WILD-TYPE" 
      TCGA-44-6145       TCGA-44-6146       TCGA-44-6148       TCGA-44-6774 
"OR5D13 WILD-TYPE" "OR5D13 WILD-TYPE" "OR5D13 WILD-TYPE" "OR5D13 WILD-TYPE" 
      TCGA-44-6775       TCGA-44-6776       TCGA-44-6777       TCGA-44-6778 
"OR5D13 WILD-TYPE" "OR5D13 WILD-TYPE" "OR5D13 WILD-TYPE" "OR5D13 WILD-TYPE" 
      TCGA-44-6779       TCGA-49-4486       TCGA-49-4487       TCGA-49-4490 
"OR5D13 WILD-TYPE" "OR5D13 WILD-TYPE" "OR5D13 WILD-TYPE" "OR5D13 WILD-TYPE" 
      TCGA-49-4494       TCGA-49-4505       TCGA-49-4506       TCGA-49-4507 
"OR5D13 WILD-TYPE" "OR5D13 WILD-TYPE" "OR5D13 WILD-TYPE" "OR5D13 WILD-TYPE" 
      TCGA-49-4510       TCGA-49-4514       TCGA-49-6742       TCGA-49-6743 
"OR5D13 WILD-TYPE" "OR5D13 WILD-TYPE" "OR5D13 WILD-TYPE" "OR5D13 WILD-TYPE" 
      TCGA-49-6744       TCGA-49-6745       TCGA-49-6767       TCGA-50-5051 
"OR5D13 WILD-TYPE" "OR5D13 WILD-TYPE" "OR5D13 WILD-TYPE" "OR5D13 WILD-TYPE" 
      TCGA-50-5072       TCGA-50-5931       TCGA-50-5939       TCGA-50-5941 
"OR5D13 WILD-TYPE" "OR5D13 WILD-TYPE" "OR5D13 WILD-TYPE" "OR5D13 WILD-TYPE" 
      TCGA-50-5942       TCGA-55-1596       TCGA-55-6543       TCGA-64-1676 
"OR5D13 WILD-TYPE" "OR5D13 WILD-TYPE" "OR5D13 WILD-TYPE" "OR5D13 WILD-TYPE" 
      TCGA-64-1677       TCGA-64-1678       TCGA-64-1680       TCGA-64-5774 
"OR5D13 WILD-TYPE" "OR5D13 WILD-TYPE" "OR5D13 WILD-TYPE" "OR5D13 WILD-TYPE" 
      TCGA-64-5775       TCGA-64-5778       TCGA-64-5779       TCGA-64-5781 
"OR5D13 WILD-TYPE" "OR5D13 WILD-TYPE" "OR5D13 WILD-TYPE" "OR5D13 WILD-TYPE" 
      TCGA-64-5815       TCGA-73-4658       TCGA-73-4659       TCGA-73-4662 
"OR5D13 WILD-TYPE" "OR5D13 WILD-TYPE" "OR5D13 WILD-TYPE" "OR5D13 WILD-TYPE" 
      TCGA-73-4666       TCGA-73-4668       TCGA-73-4670       TCGA-73-4675 
"OR5D13 WILD-TYPE" "OR5D13 WILD-TYPE" "OR5D13 WILD-TYPE" "OR5D13 WILD-TYPE" 
      TCGA-73-4676       TCGA-75-5122       TCGA-75-5125       TCGA-75-5126 
"OR5D13 WILD-TYPE" "OR5D13 WILD-TYPE" "OR5D13 WILD-TYPE" "OR5D13 WILD-TYPE" 
      TCGA-75-6203       TCGA-75-6206       TCGA-75-6207       TCGA-75-6211 
"OR5D13 WILD-TYPE" "OR5D13 WILD-TYPE" "OR5D13 WILD-TYPE" "OR5D13 WILD-TYPE" 
      TCGA-80-5611       TCGA-91-6829       TCGA-91-6835       TCGA-91-6836 
"OR5D13 WILD-TYPE" "OR5D13 WILD-TYPE" "OR5D13 WILD-TYPE" "OR5D13 WILD-TYPE" 
D128V12, continuous
D128V13, multiclass
                                             clus
vv                                            OR5D13 MUTATED OR5D13 WILD-TYPE
  CURRENT REFORMED SMOKER FOR < OR = 15 YEARS              2               60
  CURRENT REFORMED SMOKER FOR > 15 YEARS                   1               45
  CURRENT SMOKER                                           0               28
  LIFELONG NON-SMOKER                                      0               24
D128V14, continuous
[1] "Remove cluster labels:" "OR5D13 MUTATED"        
clus
  OR5D13 MUTATED OR5D13 WILD-TYPE 
               1               67 
      TCGA-05-4384       TCGA-05-4390       TCGA-05-4396       TCGA-05-4405 
"OR5D13 WILD-TYPE" "OR5D13 WILD-TYPE" "OR5D13 WILD-TYPE" "OR5D13 WILD-TYPE" 
      TCGA-05-4410       TCGA-05-4415       TCGA-05-4417       TCGA-05-4424 
"OR5D13 WILD-TYPE" "OR5D13 WILD-TYPE" "OR5D13 WILD-TYPE" "OR5D13 WILD-TYPE" 
      TCGA-05-4427       TCGA-05-4433       TCGA-05-5420       TCGA-05-5423 
"OR5D13 WILD-TYPE" "OR5D13 WILD-TYPE" "OR5D13 WILD-TYPE" "OR5D13 WILD-TYPE" 
      TCGA-05-5425       TCGA-05-5428       TCGA-35-4123       TCGA-35-5375 
"OR5D13 WILD-TYPE" "OR5D13 WILD-TYPE" "OR5D13 WILD-TYPE" "OR5D13 WILD-TYPE" 
      TCGA-38-4625       TCGA-38-4626       TCGA-44-2655       TCGA-44-2656 
"OR5D13 WILD-TYPE" "OR5D13 WILD-TYPE" "OR5D13 WILD-TYPE" "OR5D13 WILD-TYPE" 
      TCGA-44-2657       TCGA-44-2659       TCGA-44-2662       TCGA-44-2666 
"OR5D13 WILD-TYPE" "OR5D13 WILD-TYPE" "OR5D13 WILD-TYPE" "OR5D13 WILD-TYPE" 
      TCGA-44-2668       TCGA-44-3396       TCGA-44-3398       TCGA-44-3918 
"OR5D13 WILD-TYPE" "OR5D13 WILD-TYPE" "OR5D13 WILD-TYPE" "OR5D13 WILD-TYPE" 
      TCGA-44-4112       TCGA-44-5645       TCGA-44-6144       TCGA-44-6145 
"OR5D13 WILD-TYPE" "OR5D13 WILD-TYPE" "OR5D13 WILD-TYPE" "OR5D13 WILD-TYPE" 
      TCGA-44-6147       TCGA-44-6148       TCGA-44-6774       TCGA-44-6775 
"OR5D13 WILD-TYPE" "OR5D13 WILD-TYPE" "OR5D13 WILD-TYPE" "OR5D13 WILD-TYPE" 
      TCGA-44-6776       TCGA-44-6777       TCGA-44-6778       TCGA-44-6779 
"OR5D13 WILD-TYPE" "OR5D13 WILD-TYPE" "OR5D13 WILD-TYPE" "OR5D13 WILD-TYPE" 
      TCGA-49-4486       TCGA-49-4494       TCGA-49-4505       TCGA-55-1592 
"OR5D13 WILD-TYPE" "OR5D13 WILD-TYPE" "OR5D13 WILD-TYPE" "OR5D13 WILD-TYPE" 
      TCGA-55-1594       TCGA-55-1595       TCGA-55-1596       TCGA-55-5899 
"OR5D13 WILD-TYPE" "OR5D13 WILD-TYPE" "OR5D13 WILD-TYPE" "OR5D13 WILD-TYPE" 
      TCGA-55-6642       TCGA-55-6712       TCGA-64-1677       TCGA-64-1678 
"OR5D13 WILD-TYPE" "OR5D13 WILD-TYPE" "OR5D13 WILD-TYPE" "OR5D13 WILD-TYPE" 
      TCGA-64-1680       TCGA-64-5774       TCGA-64-5775       TCGA-64-5778 
"OR5D13 WILD-TYPE" "OR5D13 WILD-TYPE" "OR5D13 WILD-TYPE" "OR5D13 WILD-TYPE" 
      TCGA-64-5779       TCGA-64-5781       TCGA-73-4659       TCGA-73-4662 
"OR5D13 WILD-TYPE" "OR5D13 WILD-TYPE" "OR5D13 WILD-TYPE" "OR5D13 WILD-TYPE" 
      TCGA-73-4666       TCGA-73-4668       TCGA-73-4670       TCGA-73-4675 
"OR5D13 WILD-TYPE" "OR5D13 WILD-TYPE" "OR5D13 WILD-TYPE" "OR5D13 WILD-TYPE" 
      TCGA-73-4676       TCGA-91-6829       TCGA-91-6836 
"OR5D13 WILD-TYPE" "OR5D13 WILD-TYPE" "OR5D13 WILD-TYPE" 

Clustering(129) Variable = HOXB3 MUTATION ANALYSIS
D129V1, survival
                 sevent
clus2              0  1
  HOXB3 MUTATED    7  2
  HOXB3 WILD-TYPE 92 48
  HOXB3 MUTATED HOXB3 WILD-TYPE 
              9             140 
  HOXB3 MUTATED HOXB3 WILD-TYPE 
              2              48 
$`HOXB3 MUTATED`
TCGA-05-4382 TCGA-05-4420 TCGA-05-4432 TCGA-49-6742 TCGA-50-5933 TCGA-55-1594 
       19.92        29.95        25.02        15.02        77.88        38.73 
TCGA-64-5778 TCGA-64-5779 TCGA-73-4677 
       30.44        16.67         1.25 

$`HOXB3 WILD-TYPE`
TCGA-05-4249 TCGA-05-4250 TCGA-05-4384 TCGA-05-4390 TCGA-05-4396 TCGA-05-4397 
       38.07         3.98        14.01        37.02         9.96        24.03 
TCGA-05-4398 TCGA-05-4402 TCGA-05-4405 TCGA-05-4415 TCGA-05-4417 TCGA-05-4418 
       47.05         8.02        20.05         2.96        14.93         8.98 
TCGA-05-4424 TCGA-05-4426 TCGA-05-4427 TCGA-05-4430 TCGA-05-4433 TCGA-05-4434 
       30.02        26.01        26.01        25.02        24.00        15.02 
TCGA-05-5420 TCGA-05-5423 TCGA-05-5425 TCGA-05-5429 TCGA-05-5715 TCGA-35-3615 
        1.02         4.96         2.96         0.99         2.04         0.46 
TCGA-35-4122 TCGA-35-4123 TCGA-35-5375 TCGA-38-4625 TCGA-38-4626 TCGA-38-4627 
        7.36         5.95         8.68        47.61        85.32        37.71 
TCGA-38-4628 TCGA-38-4629 TCGA-38-4630 TCGA-38-4631 TCGA-38-4632 TCGA-38-6178 
       49.02        28.37        35.28        11.64        44.61         5.19 
TCGA-44-2655 TCGA-44-2656 TCGA-44-2657 TCGA-44-2659 TCGA-44-2661 TCGA-44-2662 
       18.87        19.10        13.15        17.39         3.39        15.78 
TCGA-44-2665 TCGA-44-2666 TCGA-44-2668 TCGA-44-3396 TCGA-44-3398 TCGA-44-3918 
       13.15         3.19         8.09        10.22         8.32         6.44 
TCGA-44-3919 TCGA-44-4112 TCGA-44-5643 TCGA-44-5645 TCGA-44-6144 TCGA-44-6145 
        6.21         4.60         3.48         6.84         0.30         3.35 
TCGA-44-6146 TCGA-44-6147 TCGA-44-6148 TCGA-44-6774 TCGA-44-6775 TCGA-44-6776 
        9.93         7.76         3.12         5.42         2.70        63.72 
TCGA-44-6777 TCGA-44-6778 TCGA-44-6779 TCGA-49-4486 TCGA-49-4487 TCGA-49-4488 
       32.45        36.49        16.41        76.21        28.11        28.57 
TCGA-49-4490 TCGA-49-4494 TCGA-49-4501 TCGA-49-4505 TCGA-49-4506 TCGA-49-4507 
       12.66        35.54        46.72        14.07        32.84         8.81 
TCGA-49-4510 TCGA-49-4512 TCGA-49-4514 TCGA-49-6743 TCGA-49-6744 TCGA-49-6745 
       29.46        29.75        43.20        12.13        12.99         4.93 
TCGA-50-5044 TCGA-50-5045 TCGA-50-5049 TCGA-50-5051 TCGA-50-5055 TCGA-50-5066 
       20.48        71.47        48.82        14.96        25.81         9.76 
TCGA-50-5068 TCGA-50-5072 TCGA-50-5930 TCGA-50-5931 TCGA-50-5932 TCGA-50-5935 
       49.28         8.05         9.27         8.78        35.87        21.47 
TCGA-50-5936 TCGA-50-5939 TCGA-50-5941 TCGA-50-5942 TCGA-50-5944 TCGA-50-5946 
        8.45        15.12         9.37         4.44        12.26        11.47 
TCGA-50-6590 TCGA-50-6591 TCGA-50-6592 TCGA-50-6593 TCGA-50-6594 TCGA-50-6595 
       42.31         3.88        25.51        11.05        12.16         6.21 
TCGA-50-6597 TCGA-55-1592 TCGA-55-1595 TCGA-55-1596 TCGA-55-5899 TCGA-55-6543 
       33.37        23.05        48.62        45.17         2.86         0.07 
TCGA-55-6642 TCGA-55-6712 TCGA-64-1676 TCGA-64-1677 TCGA-64-1678 TCGA-64-1680 
       32.61         0.79        56.81        20.65        39.09        37.02 
TCGA-64-5774 TCGA-64-5775 TCGA-64-5781 TCGA-64-5815 TCGA-67-3770 TCGA-67-3771 
       83.84         0.10        39.52         7.33         0.99         1.97 
TCGA-67-3772 TCGA-67-3773 TCGA-67-3774 TCGA-67-6215 TCGA-67-6216 TCGA-67-6217 
        0.59         2.04         0.59         0.89         0.69        13.87 
TCGA-71-6725 TCGA-73-4658 TCGA-73-4659 TCGA-73-4662 TCGA-73-4666 TCGA-73-4668 
        2.01        52.57        23.38        29.95        20.28        15.35 
TCGA-73-4670 TCGA-73-4675 TCGA-73-4676 TCGA-91-6828 TCGA-91-6829 TCGA-91-6831 
        0.46         1.32         4.01         1.22        41.33         1.28 
TCGA-91-6835 TCGA-91-6836 
        1.15         0.36 

  HOXB3 MUTATED HOXB3 WILD-TYPE 
           1.25            0.07 
  HOXB3 MUTATED HOXB3 WILD-TYPE 
          77.88           85.32 
  HOXB3 MUTATED HOXB3 WILD-TYPE 
         25.020          12.825 
[1] "1.2 - 77.9 (25.0)" "0.1 - 85.3 (12.8)"
     TCGA-05-4249      TCGA-05-4250      TCGA-05-4382      TCGA-05-4384 
"HOXB3 WILD-TYPE" "HOXB3 WILD-TYPE"   "HOXB3 MUTATED" "HOXB3 WILD-TYPE" 
     TCGA-05-4390      TCGA-05-4396      TCGA-05-4397      TCGA-05-4398 
"HOXB3 WILD-TYPE" "HOXB3 WILD-TYPE" "HOXB3 WILD-TYPE" "HOXB3 WILD-TYPE" 
     TCGA-05-4402      TCGA-05-4405      TCGA-05-4415      TCGA-05-4417 
"HOXB3 WILD-TYPE" "HOXB3 WILD-TYPE" "HOXB3 WILD-TYPE" "HOXB3 WILD-TYPE" 
     TCGA-05-4418      TCGA-05-4420      TCGA-05-4424      TCGA-05-4426 
"HOXB3 WILD-TYPE"   "HOXB3 MUTATED" "HOXB3 WILD-TYPE" "HOXB3 WILD-TYPE" 
     TCGA-05-4427      TCGA-05-4430      TCGA-05-4432      TCGA-05-4433 
"HOXB3 WILD-TYPE" "HOXB3 WILD-TYPE"   "HOXB3 MUTATED" "HOXB3 WILD-TYPE" 
     TCGA-05-4434      TCGA-05-5420      TCGA-05-5423      TCGA-05-5425 
"HOXB3 WILD-TYPE" "HOXB3 WILD-TYPE" "HOXB3 WILD-TYPE" "HOXB3 WILD-TYPE" 
     TCGA-05-5429      TCGA-05-5715      TCGA-35-3615      TCGA-35-4122 
"HOXB3 WILD-TYPE" "HOXB3 WILD-TYPE" "HOXB3 WILD-TYPE" "HOXB3 WILD-TYPE" 
     TCGA-35-4123      TCGA-35-5375      TCGA-38-4625      TCGA-38-4626 
"HOXB3 WILD-TYPE" "HOXB3 WILD-TYPE" "HOXB3 WILD-TYPE" "HOXB3 WILD-TYPE" 
     TCGA-38-4627      TCGA-38-4628      TCGA-38-4629      TCGA-38-4630 
"HOXB3 WILD-TYPE" "HOXB3 WILD-TYPE" "HOXB3 WILD-TYPE" "HOXB3 WILD-TYPE" 
     TCGA-38-4631      TCGA-38-4632      TCGA-38-6178      TCGA-44-2655 
"HOXB3 WILD-TYPE" "HOXB3 WILD-TYPE" "HOXB3 WILD-TYPE" "HOXB3 WILD-TYPE" 
     TCGA-44-2656      TCGA-44-2657      TCGA-44-2659      TCGA-44-2661 
"HOXB3 WILD-TYPE" "HOXB3 WILD-TYPE" "HOXB3 WILD-TYPE" "HOXB3 WILD-TYPE" 
     TCGA-44-2662      TCGA-44-2665      TCGA-44-2666      TCGA-44-2668 
"HOXB3 WILD-TYPE" "HOXB3 WILD-TYPE" "HOXB3 WILD-TYPE" "HOXB3 WILD-TYPE" 
     TCGA-44-3396      TCGA-44-3398      TCGA-44-3918      TCGA-44-3919 
"HOXB3 WILD-TYPE" "HOXB3 WILD-TYPE" "HOXB3 WILD-TYPE" "HOXB3 WILD-TYPE" 
     TCGA-44-4112      TCGA-44-5643      TCGA-44-5645      TCGA-44-6144 
"HOXB3 WILD-TYPE" "HOXB3 WILD-TYPE" "HOXB3 WILD-TYPE" "HOXB3 WILD-TYPE" 
     TCGA-44-6145      TCGA-44-6146      TCGA-44-6147      TCGA-44-6148 
"HOXB3 WILD-TYPE" "HOXB3 WILD-TYPE" "HOXB3 WILD-TYPE" "HOXB3 WILD-TYPE" 
     TCGA-44-6774      TCGA-44-6775      TCGA-44-6776      TCGA-44-6777 
"HOXB3 WILD-TYPE" "HOXB3 WILD-TYPE" "HOXB3 WILD-TYPE" "HOXB3 WILD-TYPE" 
     TCGA-44-6778      TCGA-44-6779      TCGA-49-4486      TCGA-49-4487 
"HOXB3 WILD-TYPE" "HOXB3 WILD-TYPE" "HOXB3 WILD-TYPE" "HOXB3 WILD-TYPE" 
     TCGA-49-4488      TCGA-49-4490      TCGA-49-4494      TCGA-49-4501 
"HOXB3 WILD-TYPE" "HOXB3 WILD-TYPE" "HOXB3 WILD-TYPE" "HOXB3 WILD-TYPE" 
     TCGA-49-4505      TCGA-49-4506      TCGA-49-4507      TCGA-49-4510 
"HOXB3 WILD-TYPE" "HOXB3 WILD-TYPE" "HOXB3 WILD-TYPE" "HOXB3 WILD-TYPE" 
     TCGA-49-4512      TCGA-49-4514      TCGA-49-6742      TCGA-49-6743 
"HOXB3 WILD-TYPE" "HOXB3 WILD-TYPE"   "HOXB3 MUTATED" "HOXB3 WILD-TYPE" 
     TCGA-49-6744      TCGA-49-6745      TCGA-50-5044      TCGA-50-5045 
"HOXB3 WILD-TYPE" "HOXB3 WILD-TYPE" "HOXB3 WILD-TYPE" "HOXB3 WILD-TYPE" 
     TCGA-50-5049      TCGA-50-5051      TCGA-50-5055      TCGA-50-5066 
"HOXB3 WILD-TYPE" "HOXB3 WILD-TYPE" "HOXB3 WILD-TYPE" "HOXB3 WILD-TYPE" 
     TCGA-50-5068      TCGA-50-5072      TCGA-50-5930      TCGA-50-5931 
"HOXB3 WILD-TYPE" "HOXB3 WILD-TYPE" "HOXB3 WILD-TYPE" "HOXB3 WILD-TYPE" 
     TCGA-50-5932      TCGA-50-5933      TCGA-50-5935      TCGA-50-5936 
"HOXB3 WILD-TYPE"   "HOXB3 MUTATED" "HOXB3 WILD-TYPE" "HOXB3 WILD-TYPE" 
     TCGA-50-5939      TCGA-50-5941      TCGA-50-5942      TCGA-50-5944 
"HOXB3 WILD-TYPE" "HOXB3 WILD-TYPE" "HOXB3 WILD-TYPE" "HOXB3 WILD-TYPE" 
     TCGA-50-5946      TCGA-50-6590      TCGA-50-6591      TCGA-50-6592 
"HOXB3 WILD-TYPE" "HOXB3 WILD-TYPE" "HOXB3 WILD-TYPE" "HOXB3 WILD-TYPE" 
     TCGA-50-6593      TCGA-50-6594      TCGA-50-6595      TCGA-50-6597 
"HOXB3 WILD-TYPE" "HOXB3 WILD-TYPE" "HOXB3 WILD-TYPE" "HOXB3 WILD-TYPE" 
     TCGA-55-1592      TCGA-55-1594      TCGA-55-1595      TCGA-55-1596 
"HOXB3 WILD-TYPE"   "HOXB3 MUTATED" "HOXB3 WILD-TYPE" "HOXB3 WILD-TYPE" 
     TCGA-55-5899      TCGA-55-6543      TCGA-55-6642      TCGA-55-6712 
"HOXB3 WILD-TYPE" "HOXB3 WILD-TYPE" "HOXB3 WILD-TYPE" "HOXB3 WILD-TYPE" 
     TCGA-64-1676      TCGA-64-1677      TCGA-64-1678      TCGA-64-1680 
"HOXB3 WILD-TYPE" "HOXB3 WILD-TYPE" "HOXB3 WILD-TYPE" "HOXB3 WILD-TYPE" 
     TCGA-64-5774      TCGA-64-5775      TCGA-64-5778      TCGA-64-5779 
"HOXB3 WILD-TYPE" "HOXB3 WILD-TYPE"   "HOXB3 MUTATED"   "HOXB3 MUTATED" 
     TCGA-64-5781      TCGA-64-5815      TCGA-67-3770      TCGA-67-3771 
"HOXB3 WILD-TYPE" "HOXB3 WILD-TYPE" "HOXB3 WILD-TYPE" "HOXB3 WILD-TYPE" 
     TCGA-67-3772      TCGA-67-3773      TCGA-67-3774      TCGA-67-6215 
"HOXB3 WILD-TYPE" "HOXB3 WILD-TYPE" "HOXB3 WILD-TYPE" "HOXB3 WILD-TYPE" 
     TCGA-67-6216      TCGA-67-6217      TCGA-71-6725      TCGA-73-4658 
"HOXB3 WILD-TYPE" "HOXB3 WILD-TYPE" "HOXB3 WILD-TYPE" "HOXB3 WILD-TYPE" 
     TCGA-73-4659      TCGA-73-4662      TCGA-73-4666      TCGA-73-4668 
"HOXB3 WILD-TYPE" "HOXB3 WILD-TYPE" "HOXB3 WILD-TYPE" "HOXB3 WILD-TYPE" 
     TCGA-73-4670      TCGA-73-4675      TCGA-73-4676      TCGA-73-4677 
"HOXB3 WILD-TYPE" "HOXB3 WILD-TYPE" "HOXB3 WILD-TYPE"   "HOXB3 MUTATED" 
     TCGA-91-6828      TCGA-91-6829      TCGA-91-6831      TCGA-91-6835 
"HOXB3 WILD-TYPE" "HOXB3 WILD-TYPE" "HOXB3 WILD-TYPE" "HOXB3 WILD-TYPE" 
     TCGA-91-6836 
"HOXB3 WILD-TYPE" 
     TCGA-05-4249      TCGA-05-4250      TCGA-05-4382      TCGA-05-4384 
"HOXB3 WILD-TYPE" "HOXB3 WILD-TYPE"   "HOXB3 MUTATED" "HOXB3 WILD-TYPE" 
     TCGA-05-4390      TCGA-05-4396      TCGA-05-4397      TCGA-05-4398 
"HOXB3 WILD-TYPE" "HOXB3 WILD-TYPE" "HOXB3 WILD-TYPE" "HOXB3 WILD-TYPE" 
     TCGA-05-4402      TCGA-05-4405      TCGA-05-4415      TCGA-05-4417 
"HOXB3 WILD-TYPE" "HOXB3 WILD-TYPE" "HOXB3 WILD-TYPE" "HOXB3 WILD-TYPE" 
     TCGA-05-4418      TCGA-05-4420      TCGA-05-4424      TCGA-05-4426 
"HOXB3 WILD-TYPE"   "HOXB3 MUTATED" "HOXB3 WILD-TYPE" "HOXB3 WILD-TYPE" 
     TCGA-05-4427      TCGA-05-4430      TCGA-05-4432      TCGA-05-4433 
"HOXB3 WILD-TYPE" "HOXB3 WILD-TYPE"   "HOXB3 MUTATED" "HOXB3 WILD-TYPE" 
     TCGA-05-4434      TCGA-05-5420      TCGA-05-5423      TCGA-05-5425 
"HOXB3 WILD-TYPE" "HOXB3 WILD-TYPE" "HOXB3 WILD-TYPE" "HOXB3 WILD-TYPE" 
     TCGA-05-5429      TCGA-05-5715      TCGA-35-3615      TCGA-35-4122 
"HOXB3 WILD-TYPE" "HOXB3 WILD-TYPE" "HOXB3 WILD-TYPE" "HOXB3 WILD-TYPE" 
     TCGA-35-4123      TCGA-35-5375      TCGA-38-4625      TCGA-38-4626 
"HOXB3 WILD-TYPE" "HOXB3 WILD-TYPE" "HOXB3 WILD-TYPE" "HOXB3 WILD-TYPE" 
     TCGA-38-4627      TCGA-38-4628      TCGA-38-4629      TCGA-38-4630 
"HOXB3 WILD-TYPE" "HOXB3 WILD-TYPE" "HOXB3 WILD-TYPE" "HOXB3 WILD-TYPE" 
     TCGA-38-4631      TCGA-38-4632      TCGA-38-6178      TCGA-44-2655 
"HOXB3 WILD-TYPE" "HOXB3 WILD-TYPE" "HOXB3 WILD-TYPE" "HOXB3 WILD-TYPE" 
     TCGA-44-2656      TCGA-44-2657      TCGA-44-2659      TCGA-44-2661 
"HOXB3 WILD-TYPE" "HOXB3 WILD-TYPE" "HOXB3 WILD-TYPE" "HOXB3 WILD-TYPE" 
     TCGA-44-2662      TCGA-44-2665      TCGA-44-2666      TCGA-44-2668 
"HOXB3 WILD-TYPE" "HOXB3 WILD-TYPE" "HOXB3 WILD-TYPE" "HOXB3 WILD-TYPE" 
     TCGA-44-3396      TCGA-44-3398      TCGA-44-3918      TCGA-44-3919 
"HOXB3 WILD-TYPE" "HOXB3 WILD-TYPE" "HOXB3 WILD-TYPE" "HOXB3 WILD-TYPE" 
     TCGA-44-4112      TCGA-44-5643      TCGA-44-5645      TCGA-44-6144 
"HOXB3 WILD-TYPE" "HOXB3 WILD-TYPE" "HOXB3 WILD-TYPE" "HOXB3 WILD-TYPE" 
     TCGA-44-6145      TCGA-44-6146      TCGA-44-6147      TCGA-44-6148 
"HOXB3 WILD-TYPE" "HOXB3 WILD-TYPE" "HOXB3 WILD-TYPE" "HOXB3 WILD-TYPE" 
     TCGA-44-6774      TCGA-44-6775      TCGA-44-6776      TCGA-44-6777 
"HOXB3 WILD-TYPE" "HOXB3 WILD-TYPE" "HOXB3 WILD-TYPE" "HOXB3 WILD-TYPE" 
     TCGA-44-6778      TCGA-44-6779      TCGA-49-4486      TCGA-49-4487 
"HOXB3 WILD-TYPE" "HOXB3 WILD-TYPE" "HOXB3 WILD-TYPE" "HOXB3 WILD-TYPE" 
     TCGA-49-4488      TCGA-49-4490      TCGA-49-4494      TCGA-49-4501 
"HOXB3 WILD-TYPE" "HOXB3 WILD-TYPE" "HOXB3 WILD-TYPE" "HOXB3 WILD-TYPE" 
     TCGA-49-4505      TCGA-49-4506      TCGA-49-4507      TCGA-49-4510 
"HOXB3 WILD-TYPE" "HOXB3 WILD-TYPE" "HOXB3 WILD-TYPE" "HOXB3 WILD-TYPE" 
     TCGA-49-4512      TCGA-49-4514      TCGA-49-6742      TCGA-49-6743 
"HOXB3 WILD-TYPE" "HOXB3 WILD-TYPE"   "HOXB3 MUTATED" "HOXB3 WILD-TYPE" 
     TCGA-49-6744      TCGA-49-6745      TCGA-50-5044      TCGA-50-5045 
"HOXB3 WILD-TYPE" "HOXB3 WILD-TYPE" "HOXB3 WILD-TYPE" "HOXB3 WILD-TYPE" 
     TCGA-50-5049      TCGA-50-5051      TCGA-50-5055      TCGA-50-5066 
"HOXB3 WILD-TYPE" "HOXB3 WILD-TYPE" "HOXB3 WILD-TYPE" "HOXB3 WILD-TYPE" 
     TCGA-50-5068      TCGA-50-5072      TCGA-50-5930      TCGA-50-5931 
"HOXB3 WILD-TYPE" "HOXB3 WILD-TYPE" "HOXB3 WILD-TYPE" "HOXB3 WILD-TYPE" 
     TCGA-50-5932      TCGA-50-5933      TCGA-50-5935      TCGA-50-5936 
"HOXB3 WILD-TYPE"   "HOXB3 MUTATED" "HOXB3 WILD-TYPE" "HOXB3 WILD-TYPE" 
     TCGA-50-5939      TCGA-50-5941      TCGA-50-5942      TCGA-50-5944 
"HOXB3 WILD-TYPE" "HOXB3 WILD-TYPE" "HOXB3 WILD-TYPE" "HOXB3 WILD-TYPE" 
     TCGA-50-5946      TCGA-50-6590      TCGA-50-6591      TCGA-50-6592 
"HOXB3 WILD-TYPE" "HOXB3 WILD-TYPE" "HOXB3 WILD-TYPE" "HOXB3 WILD-TYPE" 
     TCGA-50-6593      TCGA-50-6594      TCGA-50-6595      TCGA-50-6597 
"HOXB3 WILD-TYPE" "HOXB3 WILD-TYPE" "HOXB3 WILD-TYPE" "HOXB3 WILD-TYPE" 
     TCGA-55-1592      TCGA-55-1594      TCGA-55-1595      TCGA-55-1596 
"HOXB3 WILD-TYPE"   "HOXB3 MUTATED" "HOXB3 WILD-TYPE" "HOXB3 WILD-TYPE" 
     TCGA-55-5899      TCGA-55-6543      TCGA-55-6642      TCGA-55-6712 
"HOXB3 WILD-TYPE" "HOXB3 WILD-TYPE" "HOXB3 WILD-TYPE" "HOXB3 WILD-TYPE" 
     TCGA-64-1676      TCGA-64-1677      TCGA-64-1678      TCGA-64-1680 
"HOXB3 WILD-TYPE" "HOXB3 WILD-TYPE" "HOXB3 WILD-TYPE" "HOXB3 WILD-TYPE" 
     TCGA-64-5774      TCGA-64-5775      TCGA-64-5778      TCGA-64-5779 
"HOXB3 WILD-TYPE" "HOXB3 WILD-TYPE"   "HOXB3 MUTATED"   "HOXB3 MUTATED" 
     TCGA-64-5781      TCGA-64-5815      TCGA-67-3770      TCGA-67-3771 
"HOXB3 WILD-TYPE" "HOXB3 WILD-TYPE" "HOXB3 WILD-TYPE" "HOXB3 WILD-TYPE" 
     TCGA-67-3772      TCGA-67-3773      TCGA-67-3774      TCGA-67-6215 
"HOXB3 WILD-TYPE" "HOXB3 WILD-TYPE" "HOXB3 WILD-TYPE" "HOXB3 WILD-TYPE" 
     TCGA-67-6216      TCGA-67-6217      TCGA-71-6725      TCGA-73-4658 
"HOXB3 WILD-TYPE" "HOXB3 WILD-TYPE" "HOXB3 WILD-TYPE" "HOXB3 WILD-TYPE" 
     TCGA-73-4659      TCGA-73-4662      TCGA-73-4666      TCGA-73-4668 
"HOXB3 WILD-TYPE" "HOXB3 WILD-TYPE" "HOXB3 WILD-TYPE" "HOXB3 WILD-TYPE" 
     TCGA-73-4670      TCGA-73-4675      TCGA-73-4676      TCGA-73-4677 
"HOXB3 WILD-TYPE" "HOXB3 WILD-TYPE" "HOXB3 WILD-TYPE"   "HOXB3 MUTATED" 
     TCGA-91-6828      TCGA-91-6829      TCGA-91-6831      TCGA-91-6835 
"HOXB3 WILD-TYPE" "HOXB3 WILD-TYPE" "HOXB3 WILD-TYPE" "HOXB3 WILD-TYPE" 
     TCGA-91-6836 
"HOXB3 WILD-TYPE" 
     TCGA-05-4249      TCGA-05-4250      TCGA-05-4382      TCGA-05-4384 
"HOXB3 WILD-TYPE" "HOXB3 WILD-TYPE"   "HOXB3 MUTATED" "HOXB3 WILD-TYPE" 
     TCGA-05-4390      TCGA-05-4396      TCGA-05-4397      TCGA-05-4398 
"HOXB3 WILD-TYPE" "HOXB3 WILD-TYPE" "HOXB3 WILD-TYPE" "HOXB3 WILD-TYPE" 
     TCGA-05-4402      TCGA-05-4405      TCGA-05-4415      TCGA-05-4417 
"HOXB3 WILD-TYPE" "HOXB3 WILD-TYPE" "HOXB3 WILD-TYPE" "HOXB3 WILD-TYPE" 
     TCGA-05-4418      TCGA-05-4420      TCGA-05-4424      TCGA-05-4426 
"HOXB3 WILD-TYPE"   "HOXB3 MUTATED" "HOXB3 WILD-TYPE" "HOXB3 WILD-TYPE" 
     TCGA-05-4427      TCGA-05-4430      TCGA-05-4432      TCGA-05-4433 
"HOXB3 WILD-TYPE" "HOXB3 WILD-TYPE"   "HOXB3 MUTATED" "HOXB3 WILD-TYPE" 
     TCGA-05-4434      TCGA-05-5420      TCGA-05-5423      TCGA-05-5425 
"HOXB3 WILD-TYPE" "HOXB3 WILD-TYPE" "HOXB3 WILD-TYPE" "HOXB3 WILD-TYPE" 
     TCGA-05-5429      TCGA-05-5715      TCGA-35-3615      TCGA-35-4122 
"HOXB3 WILD-TYPE" "HOXB3 WILD-TYPE" "HOXB3 WILD-TYPE" "HOXB3 WILD-TYPE" 
     TCGA-35-4123      TCGA-35-5375      TCGA-38-4625      TCGA-38-4626 
"HOXB3 WILD-TYPE" "HOXB3 WILD-TYPE" "HOXB3 WILD-TYPE" "HOXB3 WILD-TYPE" 
     TCGA-38-4627      TCGA-38-4628      TCGA-38-4629      TCGA-38-4630 
"HOXB3 WILD-TYPE" "HOXB3 WILD-TYPE" "HOXB3 WILD-TYPE" "HOXB3 WILD-TYPE" 
     TCGA-38-4631      TCGA-38-4632      TCGA-38-6178      TCGA-44-2655 
"HOXB3 WILD-TYPE" "HOXB3 WILD-TYPE" "HOXB3 WILD-TYPE" "HOXB3 WILD-TYPE" 
     TCGA-44-2656      TCGA-44-2657      TCGA-44-2659      TCGA-44-2661 
"HOXB3 WILD-TYPE" "HOXB3 WILD-TYPE" "HOXB3 WILD-TYPE" "HOXB3 WILD-TYPE" 
     TCGA-44-2662      TCGA-44-2665      TCGA-44-2666      TCGA-44-2668 
"HOXB3 WILD-TYPE" "HOXB3 WILD-TYPE" "HOXB3 WILD-TYPE" "HOXB3 WILD-TYPE" 
     TCGA-44-3396      TCGA-44-3398      TCGA-44-3918      TCGA-44-3919 
"HOXB3 WILD-TYPE" "HOXB3 WILD-TYPE" "HOXB3 WILD-TYPE" "HOXB3 WILD-TYPE" 
     TCGA-44-4112      TCGA-44-5643      TCGA-44-5645      TCGA-44-6144 
"HOXB3 WILD-TYPE" "HOXB3 WILD-TYPE" "HOXB3 WILD-TYPE" "HOXB3 WILD-TYPE" 
     TCGA-44-6145      TCGA-44-6146      TCGA-44-6147      TCGA-44-6148 
"HOXB3 WILD-TYPE" "HOXB3 WILD-TYPE" "HOXB3 WILD-TYPE" "HOXB3 WILD-TYPE" 
     TCGA-44-6774      TCGA-44-6775      TCGA-44-6776      TCGA-44-6777 
"HOXB3 WILD-TYPE" "HOXB3 WILD-TYPE" "HOXB3 WILD-TYPE" "HOXB3 WILD-TYPE" 
     TCGA-44-6778      TCGA-44-6779      TCGA-49-4486      TCGA-49-4487 
"HOXB3 WILD-TYPE" "HOXB3 WILD-TYPE" "HOXB3 WILD-TYPE" "HOXB3 WILD-TYPE" 
     TCGA-49-4488      TCGA-49-4490      TCGA-49-4494      TCGA-49-4501 
"HOXB3 WILD-TYPE" "HOXB3 WILD-TYPE" "HOXB3 WILD-TYPE" "HOXB3 WILD-TYPE" 
     TCGA-49-4505      TCGA-49-4506      TCGA-49-4507      TCGA-49-4510 
"HOXB3 WILD-TYPE" "HOXB3 WILD-TYPE" "HOXB3 WILD-TYPE" "HOXB3 WILD-TYPE" 
     TCGA-49-4512      TCGA-49-4514      TCGA-49-6742      TCGA-49-6743 
"HOXB3 WILD-TYPE" "HOXB3 WILD-TYPE"   "HOXB3 MUTATED" "HOXB3 WILD-TYPE" 
     TCGA-49-6744      TCGA-49-6745      TCGA-50-5044      TCGA-50-5045 
"HOXB3 WILD-TYPE" "HOXB3 WILD-TYPE" "HOXB3 WILD-TYPE" "HOXB3 WILD-TYPE" 
     TCGA-50-5049      TCGA-50-5051      TCGA-50-5055      TCGA-50-5066 
"HOXB3 WILD-TYPE" "HOXB3 WILD-TYPE" "HOXB3 WILD-TYPE" "HOXB3 WILD-TYPE" 
     TCGA-50-5068      TCGA-50-5072      TCGA-50-5930      TCGA-50-5931 
"HOXB3 WILD-TYPE" "HOXB3 WILD-TYPE" "HOXB3 WILD-TYPE" "HOXB3 WILD-TYPE" 
     TCGA-50-5932      TCGA-50-5933      TCGA-50-5935      TCGA-50-5936 
"HOXB3 WILD-TYPE"   "HOXB3 MUTATED" "HOXB3 WILD-TYPE" "HOXB3 WILD-TYPE" 
     TCGA-50-5939      TCGA-50-5941      TCGA-50-5942      TCGA-50-5944 
"HOXB3 WILD-TYPE" "HOXB3 WILD-TYPE" "HOXB3 WILD-TYPE" "HOXB3 WILD-TYPE" 
     TCGA-50-5946      TCGA-50-6590      TCGA-50-6591      TCGA-50-6592 
"HOXB3 WILD-TYPE" "HOXB3 WILD-TYPE" "HOXB3 WILD-TYPE" "HOXB3 WILD-TYPE" 
     TCGA-50-6593      TCGA-50-6594      TCGA-50-6595      TCGA-50-6597 
"HOXB3 WILD-TYPE" "HOXB3 WILD-TYPE" "HOXB3 WILD-TYPE" "HOXB3 WILD-TYPE" 
     TCGA-55-1592      TCGA-55-1594      TCGA-55-1595      TCGA-55-1596 
"HOXB3 WILD-TYPE"   "HOXB3 MUTATED" "HOXB3 WILD-TYPE" "HOXB3 WILD-TYPE" 
     TCGA-55-5899      TCGA-55-6543      TCGA-55-6642      TCGA-55-6712 
"HOXB3 WILD-TYPE" "HOXB3 WILD-TYPE" "HOXB3 WILD-TYPE" "HOXB3 WILD-TYPE" 
     TCGA-64-1676      TCGA-64-1677      TCGA-64-1678      TCGA-64-1680 
"HOXB3 WILD-TYPE" "HOXB3 WILD-TYPE" "HOXB3 WILD-TYPE" "HOXB3 WILD-TYPE" 
     TCGA-64-5774      TCGA-64-5775      TCGA-64-5778      TCGA-64-5779 
"HOXB3 WILD-TYPE" "HOXB3 WILD-TYPE"   "HOXB3 MUTATED"   "HOXB3 MUTATED" 
     TCGA-64-5781      TCGA-64-5815      TCGA-67-3770      TCGA-67-3771 
"HOXB3 WILD-TYPE" "HOXB3 WILD-TYPE" "HOXB3 WILD-TYPE" "HOXB3 WILD-TYPE" 
     TCGA-67-3772      TCGA-67-3773      TCGA-67-3774      TCGA-67-6215 
"HOXB3 WILD-TYPE" "HOXB3 WILD-TYPE" "HOXB3 WILD-TYPE" "HOXB3 WILD-TYPE" 
     TCGA-67-6216      TCGA-67-6217      TCGA-71-6725      TCGA-73-4658 
"HOXB3 WILD-TYPE" "HOXB3 WILD-TYPE" "HOXB3 WILD-TYPE" "HOXB3 WILD-TYPE" 
     TCGA-73-4659      TCGA-73-4662      TCGA-73-4666      TCGA-73-4668 
"HOXB3 WILD-TYPE" "HOXB3 WILD-TYPE" "HOXB3 WILD-TYPE" "HOXB3 WILD-TYPE" 
     TCGA-73-4670      TCGA-73-4675      TCGA-73-4676      TCGA-73-4677 
"HOXB3 WILD-TYPE" "HOXB3 WILD-TYPE" "HOXB3 WILD-TYPE"   "HOXB3 MUTATED" 
     TCGA-91-6828      TCGA-91-6829      TCGA-91-6831      TCGA-91-6835 
"HOXB3 WILD-TYPE" "HOXB3 WILD-TYPE" "HOXB3 WILD-TYPE" "HOXB3 WILD-TYPE" 
     TCGA-91-6836 
"HOXB3 WILD-TYPE" 
[1] "hr=" "2.6"
D129V2, continuous
D129V3, binary
[1] "tbl2"
                 cls
clus              [,1] [,2]
  HOXB3 MUTATED      0   10
  HOXB3 WILD-TYPE   93   69
        clus
vv       HOXB3 MUTATED HOXB3 WILD-TYPE
  FEMALE             0              93
  MALE              10              69
D129V4, continuous
[1] "Remove cluster labels:" "HOXB3 MUTATED"         
clus
  HOXB3 MUTATED HOXB3 WILD-TYPE 
              1              11 
     TCGA-35-4122      TCGA-35-4123      TCGA-35-5375      TCGA-64-1677 
"HOXB3 WILD-TYPE" "HOXB3 WILD-TYPE" "HOXB3 WILD-TYPE" "HOXB3 WILD-TYPE" 
     TCGA-71-6725      TCGA-73-4659      TCGA-73-4662      TCGA-73-4666 
"HOXB3 WILD-TYPE" "HOXB3 WILD-TYPE" "HOXB3 WILD-TYPE" "HOXB3 WILD-TYPE" 
     TCGA-73-4668      TCGA-73-4676      TCGA-75-5122 
"HOXB3 WILD-TYPE" "HOXB3 WILD-TYPE" "HOXB3 WILD-TYPE" 
D129V5, multiclass
D129V6, multiclass
    clus
vv   HOXB3 MUTATED HOXB3 WILD-TYPE
  T1             0              41
  T2             8             100
  T3             1              13
  T4             1               7
D129V7, multiclass
       clus
vv      HOXB3 MUTATED HOXB3 WILD-TYPE
  N0                5              90
  N1                2              35
  N2+N3             3              32
D129V8, multiclass
    clus
vv   HOXB3 MUTATED HOXB3 WILD-TYPE
  M0             9             128
  M1             0               9
  MX             1              21
D129V9, multiclass
     clus
vv    HOXB3 MUTATED HOXB3 WILD-TYPE
  I               5              83
  II              2              31
  III             3              36
  IV              0               9
D129V10, binary
[1] "tbl2"
                 cls
clus              [,1] [,2]
  HOXB3 MUTATED      1    9
  HOXB3 WILD-TYPE   15  147
     clus
vv    HOXB3 MUTATED HOXB3 WILD-TYPE
  NO              1              15
  YES             9             147
D129V11, continuous
D129V12, continuous
D129V13, multiclass
                                             clus
vv                                            HOXB3 MUTATED HOXB3 WILD-TYPE
  CURRENT REFORMED SMOKER FOR < OR = 15 YEARS             4              58
  CURRENT REFORMED SMOKER FOR > 15 YEARS                  2              44
  CURRENT SMOKER                                          3              25
  LIFELONG NON-SMOKER                                     0              24
D129V14, continuous

Clustering(130) Variable = CTNNA2 MUTATION ANALYSIS
D130V1, survival
                  sevent
clus2               0  1
  CTNNA2 MUTATED   12  5
  CTNNA2 WILD-TYPE 87 45
  CTNNA2 MUTATED CTNNA2 WILD-TYPE 
              17              132 
  CTNNA2 MUTATED CTNNA2 WILD-TYPE 
               5               45 
$`CTNNA2 MUTATED`
TCGA-05-4250 TCGA-05-4390 TCGA-05-4396 TCGA-05-4427 TCGA-05-4432 TCGA-05-5715 
        3.98        37.02         9.96        26.01        25.02         2.04 
TCGA-44-2656 TCGA-44-5643 TCGA-44-6776 TCGA-49-6743 TCGA-49-6745 TCGA-50-5045 
       19.10         3.48        63.72        12.13         4.93        71.47 
TCGA-50-5941 TCGA-50-6590 TCGA-55-1595 TCGA-91-6829 TCGA-91-6836 
        9.37        42.31        48.62        41.33         0.36 

$`CTNNA2 WILD-TYPE`
TCGA-05-4249 TCGA-05-4382 TCGA-05-4384 TCGA-05-4397 TCGA-05-4398 TCGA-05-4402 
       38.07        19.92        14.01        24.03        47.05         8.02 
TCGA-05-4405 TCGA-05-4415 TCGA-05-4417 TCGA-05-4418 TCGA-05-4420 TCGA-05-4424 
       20.05         2.96        14.93         8.98        29.95        30.02 
TCGA-05-4426 TCGA-05-4430 TCGA-05-4433 TCGA-05-4434 TCGA-05-5420 TCGA-05-5423 
       26.01        25.02        24.00        15.02         1.02         4.96 
TCGA-05-5425 TCGA-05-5429 TCGA-35-3615 TCGA-35-4122 TCGA-35-4123 TCGA-35-5375 
        2.96         0.99         0.46         7.36         5.95         8.68 
TCGA-38-4625 TCGA-38-4626 TCGA-38-4627 TCGA-38-4628 TCGA-38-4629 TCGA-38-4630 
       47.61        85.32        37.71        49.02        28.37        35.28 
TCGA-38-4631 TCGA-38-4632 TCGA-38-6178 TCGA-44-2655 TCGA-44-2657 TCGA-44-2659 
       11.64        44.61         5.19        18.87        13.15        17.39 
TCGA-44-2661 TCGA-44-2662 TCGA-44-2665 TCGA-44-2666 TCGA-44-2668 TCGA-44-3396 
        3.39        15.78        13.15         3.19         8.09        10.22 
TCGA-44-3398 TCGA-44-3918 TCGA-44-3919 TCGA-44-4112 TCGA-44-5645 TCGA-44-6144 
        8.32         6.44         6.21         4.60         6.84         0.30 
TCGA-44-6145 TCGA-44-6146 TCGA-44-6147 TCGA-44-6148 TCGA-44-6774 TCGA-44-6775 
        3.35         9.93         7.76         3.12         5.42         2.70 
TCGA-44-6777 TCGA-44-6778 TCGA-44-6779 TCGA-49-4486 TCGA-49-4487 TCGA-49-4488 
       32.45        36.49        16.41        76.21        28.11        28.57 
TCGA-49-4490 TCGA-49-4494 TCGA-49-4501 TCGA-49-4505 TCGA-49-4506 TCGA-49-4507 
       12.66        35.54        46.72        14.07        32.84         8.81 
TCGA-49-4510 TCGA-49-4512 TCGA-49-4514 TCGA-49-6742 TCGA-49-6744 TCGA-50-5044 
       29.46        29.75        43.20        15.02        12.99        20.48 
TCGA-50-5049 TCGA-50-5051 TCGA-50-5055 TCGA-50-5066 TCGA-50-5068 TCGA-50-5072 
       48.82        14.96        25.81         9.76        49.28         8.05 
TCGA-50-5930 TCGA-50-5931 TCGA-50-5932 TCGA-50-5933 TCGA-50-5935 TCGA-50-5936 
        9.27         8.78        35.87        77.88        21.47         8.45 
TCGA-50-5939 TCGA-50-5942 TCGA-50-5944 TCGA-50-5946 TCGA-50-6591 TCGA-50-6592 
       15.12         4.44        12.26        11.47         3.88        25.51 
TCGA-50-6593 TCGA-50-6594 TCGA-50-6595 TCGA-50-6597 TCGA-55-1592 TCGA-55-1594 
       11.05        12.16         6.21        33.37        23.05        38.73 
TCGA-55-1596 TCGA-55-5899 TCGA-55-6543 TCGA-55-6642 TCGA-55-6712 TCGA-64-1676 
       45.17         2.86         0.07        32.61         0.79        56.81 
TCGA-64-1677 TCGA-64-1678 TCGA-64-1680 TCGA-64-5774 TCGA-64-5775 TCGA-64-5778 
       20.65        39.09        37.02        83.84         0.10        30.44 
TCGA-64-5779 TCGA-64-5781 TCGA-64-5815 TCGA-67-3770 TCGA-67-3771 TCGA-67-3772 
       16.67        39.52         7.33         0.99         1.97         0.59 
TCGA-67-3773 TCGA-67-3774 TCGA-67-6215 TCGA-67-6216 TCGA-67-6217 TCGA-71-6725 
        2.04         0.59         0.89         0.69        13.87         2.01 
TCGA-73-4658 TCGA-73-4659 TCGA-73-4662 TCGA-73-4666 TCGA-73-4668 TCGA-73-4670 
       52.57        23.38        29.95        20.28        15.35         0.46 
TCGA-73-4675 TCGA-73-4676 TCGA-73-4677 TCGA-91-6828 TCGA-91-6831 TCGA-91-6835 
        1.32         4.01         1.25         1.22         1.28         1.15 

  CTNNA2 MUTATED CTNNA2 WILD-TYPE 
            0.36             0.07 
  CTNNA2 MUTATED CTNNA2 WILD-TYPE 
           71.47            85.32 
  CTNNA2 MUTATED CTNNA2 WILD-TYPE 
           19.10            13.51 
[1] "0.4 - 71.5 (19.1)" "0.1 - 85.3 (13.5)"
      TCGA-05-4249       TCGA-05-4250       TCGA-05-4382       TCGA-05-4384 
"CTNNA2 WILD-TYPE"   "CTNNA2 MUTATED" "CTNNA2 WILD-TYPE" "CTNNA2 WILD-TYPE" 
      TCGA-05-4390       TCGA-05-4396       TCGA-05-4397       TCGA-05-4398 
  "CTNNA2 MUTATED"   "CTNNA2 MUTATED" "CTNNA2 WILD-TYPE" "CTNNA2 WILD-TYPE" 
      TCGA-05-4402       TCGA-05-4405       TCGA-05-4415       TCGA-05-4417 
"CTNNA2 WILD-TYPE" "CTNNA2 WILD-TYPE" "CTNNA2 WILD-TYPE" "CTNNA2 WILD-TYPE" 
      TCGA-05-4418       TCGA-05-4420       TCGA-05-4424       TCGA-05-4426 
"CTNNA2 WILD-TYPE" "CTNNA2 WILD-TYPE" "CTNNA2 WILD-TYPE" "CTNNA2 WILD-TYPE" 
      TCGA-05-4427       TCGA-05-4430       TCGA-05-4432       TCGA-05-4433 
  "CTNNA2 MUTATED" "CTNNA2 WILD-TYPE"   "CTNNA2 MUTATED" "CTNNA2 WILD-TYPE" 
      TCGA-05-4434       TCGA-05-5420       TCGA-05-5423       TCGA-05-5425 
"CTNNA2 WILD-TYPE" "CTNNA2 WILD-TYPE" "CTNNA2 WILD-TYPE" "CTNNA2 WILD-TYPE" 
      TCGA-05-5429       TCGA-05-5715       TCGA-35-3615       TCGA-35-4122 
"CTNNA2 WILD-TYPE"   "CTNNA2 MUTATED" "CTNNA2 WILD-TYPE" "CTNNA2 WILD-TYPE" 
      TCGA-35-4123       TCGA-35-5375       TCGA-38-4625       TCGA-38-4626 
"CTNNA2 WILD-TYPE" "CTNNA2 WILD-TYPE" "CTNNA2 WILD-TYPE" "CTNNA2 WILD-TYPE" 
      TCGA-38-4627       TCGA-38-4628       TCGA-38-4629       TCGA-38-4630 
"CTNNA2 WILD-TYPE" "CTNNA2 WILD-TYPE" "CTNNA2 WILD-TYPE" "CTNNA2 WILD-TYPE" 
      TCGA-38-4631       TCGA-38-4632       TCGA-38-6178       TCGA-44-2655 
"CTNNA2 WILD-TYPE" "CTNNA2 WILD-TYPE" "CTNNA2 WILD-TYPE" "CTNNA2 WILD-TYPE" 
      TCGA-44-2656       TCGA-44-2657       TCGA-44-2659       TCGA-44-2661 
  "CTNNA2 MUTATED" "CTNNA2 WILD-TYPE" "CTNNA2 WILD-TYPE" "CTNNA2 WILD-TYPE" 
      TCGA-44-2662       TCGA-44-2665       TCGA-44-2666       TCGA-44-2668 
"CTNNA2 WILD-TYPE" "CTNNA2 WILD-TYPE" "CTNNA2 WILD-TYPE" "CTNNA2 WILD-TYPE" 
      TCGA-44-3396       TCGA-44-3398       TCGA-44-3918       TCGA-44-3919 
"CTNNA2 WILD-TYPE" "CTNNA2 WILD-TYPE" "CTNNA2 WILD-TYPE" "CTNNA2 WILD-TYPE" 
      TCGA-44-4112       TCGA-44-5643       TCGA-44-5645       TCGA-44-6144 
"CTNNA2 WILD-TYPE"   "CTNNA2 MUTATED" "CTNNA2 WILD-TYPE" "CTNNA2 WILD-TYPE" 
      TCGA-44-6145       TCGA-44-6146       TCGA-44-6147       TCGA-44-6148 
"CTNNA2 WILD-TYPE" "CTNNA2 WILD-TYPE" "CTNNA2 WILD-TYPE" "CTNNA2 WILD-TYPE" 
      TCGA-44-6774       TCGA-44-6775       TCGA-44-6776       TCGA-44-6777 
"CTNNA2 WILD-TYPE" "CTNNA2 WILD-TYPE"   "CTNNA2 MUTATED" "CTNNA2 WILD-TYPE" 
      TCGA-44-6778       TCGA-44-6779       TCGA-49-4486       TCGA-49-4487 
"CTNNA2 WILD-TYPE" "CTNNA2 WILD-TYPE" "CTNNA2 WILD-TYPE" "CTNNA2 WILD-TYPE" 
      TCGA-49-4488       TCGA-49-4490       TCGA-49-4494       TCGA-49-4501 
"CTNNA2 WILD-TYPE" "CTNNA2 WILD-TYPE" "CTNNA2 WILD-TYPE" "CTNNA2 WILD-TYPE" 
      TCGA-49-4505       TCGA-49-4506       TCGA-49-4507       TCGA-49-4510 
"CTNNA2 WILD-TYPE" "CTNNA2 WILD-TYPE" "CTNNA2 WILD-TYPE" "CTNNA2 WILD-TYPE" 
      TCGA-49-4512       TCGA-49-4514       TCGA-49-6742       TCGA-49-6743 
"CTNNA2 WILD-TYPE" "CTNNA2 WILD-TYPE" "CTNNA2 WILD-TYPE"   "CTNNA2 MUTATED" 
      TCGA-49-6744       TCGA-49-6745       TCGA-50-5044       TCGA-50-5045 
"CTNNA2 WILD-TYPE"   "CTNNA2 MUTATED" "CTNNA2 WILD-TYPE"   "CTNNA2 MUTATED" 
      TCGA-50-5049       TCGA-50-5051       TCGA-50-5055       TCGA-50-5066 
"CTNNA2 WILD-TYPE" "CTNNA2 WILD-TYPE" "CTNNA2 WILD-TYPE" "CTNNA2 WILD-TYPE" 
      TCGA-50-5068       TCGA-50-5072       TCGA-50-5930       TCGA-50-5931 
"CTNNA2 WILD-TYPE" "CTNNA2 WILD-TYPE" "CTNNA2 WILD-TYPE" "CTNNA2 WILD-TYPE" 
      TCGA-50-5932       TCGA-50-5933       TCGA-50-5935       TCGA-50-5936 
"CTNNA2 WILD-TYPE" "CTNNA2 WILD-TYPE" "CTNNA2 WILD-TYPE" "CTNNA2 WILD-TYPE" 
      TCGA-50-5939       TCGA-50-5941       TCGA-50-5942       TCGA-50-5944 
"CTNNA2 WILD-TYPE"   "CTNNA2 MUTATED" "CTNNA2 WILD-TYPE" "CTNNA2 WILD-TYPE" 
      TCGA-50-5946       TCGA-50-6590       TCGA-50-6591       TCGA-50-6592 
"CTNNA2 WILD-TYPE"   "CTNNA2 MUTATED" "CTNNA2 WILD-TYPE" "CTNNA2 WILD-TYPE" 
      TCGA-50-6593       TCGA-50-6594       TCGA-50-6595       TCGA-50-6597 
"CTNNA2 WILD-TYPE" "CTNNA2 WILD-TYPE" "CTNNA2 WILD-TYPE" "CTNNA2 WILD-TYPE" 
      TCGA-55-1592       TCGA-55-1594       TCGA-55-1595       TCGA-55-1596 
"CTNNA2 WILD-TYPE" "CTNNA2 WILD-TYPE"   "CTNNA2 MUTATED" "CTNNA2 WILD-TYPE" 
      TCGA-55-5899       TCGA-55-6543       TCGA-55-6642       TCGA-55-6712 
"CTNNA2 WILD-TYPE" "CTNNA2 WILD-TYPE" "CTNNA2 WILD-TYPE" "CTNNA2 WILD-TYPE" 
      TCGA-64-1676       TCGA-64-1677       TCGA-64-1678       TCGA-64-1680 
"CTNNA2 WILD-TYPE" "CTNNA2 WILD-TYPE" "CTNNA2 WILD-TYPE" "CTNNA2 WILD-TYPE" 
      TCGA-64-5774       TCGA-64-5775       TCGA-64-5778       TCGA-64-5779 
"CTNNA2 WILD-TYPE" "CTNNA2 WILD-TYPE" "CTNNA2 WILD-TYPE" "CTNNA2 WILD-TYPE" 
      TCGA-64-5781       TCGA-64-5815       TCGA-67-3770       TCGA-67-3771 
"CTNNA2 WILD-TYPE" "CTNNA2 WILD-TYPE" "CTNNA2 WILD-TYPE" "CTNNA2 WILD-TYPE" 
      TCGA-67-3772       TCGA-67-3773       TCGA-67-3774       TCGA-67-6215 
"CTNNA2 WILD-TYPE" "CTNNA2 WILD-TYPE" "CTNNA2 WILD-TYPE" "CTNNA2 WILD-TYPE" 
      TCGA-67-6216       TCGA-67-6217       TCGA-71-6725       TCGA-73-4658 
"CTNNA2 WILD-TYPE" "CTNNA2 WILD-TYPE" "CTNNA2 WILD-TYPE" "CTNNA2 WILD-TYPE" 
      TCGA-73-4659       TCGA-73-4662       TCGA-73-4666       TCGA-73-4668 
"CTNNA2 WILD-TYPE" "CTNNA2 WILD-TYPE" "CTNNA2 WILD-TYPE" "CTNNA2 WILD-TYPE" 
      TCGA-73-4670       TCGA-73-4675       TCGA-73-4676       TCGA-73-4677 
"CTNNA2 WILD-TYPE" "CTNNA2 WILD-TYPE" "CTNNA2 WILD-TYPE" "CTNNA2 WILD-TYPE" 
      TCGA-91-6828       TCGA-91-6829       TCGA-91-6831       TCGA-91-6835 
"CTNNA2 WILD-TYPE"   "CTNNA2 MUTATED" "CTNNA2 WILD-TYPE" "CTNNA2 WILD-TYPE" 
      TCGA-91-6836 
  "CTNNA2 MUTATED" 
      TCGA-05-4249       TCGA-05-4250       TCGA-05-4382       TCGA-05-4384 
"CTNNA2 WILD-TYPE"   "CTNNA2 MUTATED" "CTNNA2 WILD-TYPE" "CTNNA2 WILD-TYPE" 
      TCGA-05-4390       TCGA-05-4396       TCGA-05-4397       TCGA-05-4398 
  "CTNNA2 MUTATED"   "CTNNA2 MUTATED" "CTNNA2 WILD-TYPE" "CTNNA2 WILD-TYPE" 
      TCGA-05-4402       TCGA-05-4405       TCGA-05-4415       TCGA-05-4417 
"CTNNA2 WILD-TYPE" "CTNNA2 WILD-TYPE" "CTNNA2 WILD-TYPE" "CTNNA2 WILD-TYPE" 
      TCGA-05-4418       TCGA-05-4420       TCGA-05-4424       TCGA-05-4426 
"CTNNA2 WILD-TYPE" "CTNNA2 WILD-TYPE" "CTNNA2 WILD-TYPE" "CTNNA2 WILD-TYPE" 
      TCGA-05-4427       TCGA-05-4430       TCGA-05-4432       TCGA-05-4433 
  "CTNNA2 MUTATED" "CTNNA2 WILD-TYPE"   "CTNNA2 MUTATED" "CTNNA2 WILD-TYPE" 
      TCGA-05-4434       TCGA-05-5420       TCGA-05-5423       TCGA-05-5425 
"CTNNA2 WILD-TYPE" "CTNNA2 WILD-TYPE" "CTNNA2 WILD-TYPE" "CTNNA2 WILD-TYPE" 
      TCGA-05-5429       TCGA-05-5715       TCGA-35-3615       TCGA-35-4122 
"CTNNA2 WILD-TYPE"   "CTNNA2 MUTATED" "CTNNA2 WILD-TYPE" "CTNNA2 WILD-TYPE" 
      TCGA-35-4123       TCGA-35-5375       TCGA-38-4625       TCGA-38-4626 
"CTNNA2 WILD-TYPE" "CTNNA2 WILD-TYPE" "CTNNA2 WILD-TYPE" "CTNNA2 WILD-TYPE" 
      TCGA-38-4627       TCGA-38-4628       TCGA-38-4629       TCGA-38-4630 
"CTNNA2 WILD-TYPE" "CTNNA2 WILD-TYPE" "CTNNA2 WILD-TYPE" "CTNNA2 WILD-TYPE" 
      TCGA-38-4631       TCGA-38-4632       TCGA-38-6178       TCGA-44-2655 
"CTNNA2 WILD-TYPE" "CTNNA2 WILD-TYPE" "CTNNA2 WILD-TYPE" "CTNNA2 WILD-TYPE" 
      TCGA-44-2656       TCGA-44-2657       TCGA-44-2659       TCGA-44-2661 
  "CTNNA2 MUTATED" "CTNNA2 WILD-TYPE" "CTNNA2 WILD-TYPE" "CTNNA2 WILD-TYPE" 
      TCGA-44-2662       TCGA-44-2665       TCGA-44-2666       TCGA-44-2668 
"CTNNA2 WILD-TYPE" "CTNNA2 WILD-TYPE" "CTNNA2 WILD-TYPE" "CTNNA2 WILD-TYPE" 
      TCGA-44-3396       TCGA-44-3398       TCGA-44-3918       TCGA-44-3919 
"CTNNA2 WILD-TYPE" "CTNNA2 WILD-TYPE" "CTNNA2 WILD-TYPE" "CTNNA2 WILD-TYPE" 
      TCGA-44-4112       TCGA-44-5643       TCGA-44-5645       TCGA-44-6144 
"CTNNA2 WILD-TYPE"   "CTNNA2 MUTATED" "CTNNA2 WILD-TYPE" "CTNNA2 WILD-TYPE" 
      TCGA-44-6145       TCGA-44-6146       TCGA-44-6147       TCGA-44-6148 
"CTNNA2 WILD-TYPE" "CTNNA2 WILD-TYPE" "CTNNA2 WILD-TYPE" "CTNNA2 WILD-TYPE" 
      TCGA-44-6774       TCGA-44-6775       TCGA-44-6776       TCGA-44-6777 
"CTNNA2 WILD-TYPE" "CTNNA2 WILD-TYPE"   "CTNNA2 MUTATED" "CTNNA2 WILD-TYPE" 
      TCGA-44-6778       TCGA-44-6779       TCGA-49-4486       TCGA-49-4487 
"CTNNA2 WILD-TYPE" "CTNNA2 WILD-TYPE" "CTNNA2 WILD-TYPE" "CTNNA2 WILD-TYPE" 
      TCGA-49-4488       TCGA-49-4490       TCGA-49-4494       TCGA-49-4501 
"CTNNA2 WILD-TYPE" "CTNNA2 WILD-TYPE" "CTNNA2 WILD-TYPE" "CTNNA2 WILD-TYPE" 
      TCGA-49-4505       TCGA-49-4506       TCGA-49-4507       TCGA-49-4510 
"CTNNA2 WILD-TYPE" "CTNNA2 WILD-TYPE" "CTNNA2 WILD-TYPE" "CTNNA2 WILD-TYPE" 
      TCGA-49-4512       TCGA-49-4514       TCGA-49-6742       TCGA-49-6743 
"CTNNA2 WILD-TYPE" "CTNNA2 WILD-TYPE" "CTNNA2 WILD-TYPE"   "CTNNA2 MUTATED" 
      TCGA-49-6744       TCGA-49-6745       TCGA-50-5044       TCGA-50-5045 
"CTNNA2 WILD-TYPE"   "CTNNA2 MUTATED" "CTNNA2 WILD-TYPE"   "CTNNA2 MUTATED" 
      TCGA-50-5049       TCGA-50-5051       TCGA-50-5055       TCGA-50-5066 
"CTNNA2 WILD-TYPE" "CTNNA2 WILD-TYPE" "CTNNA2 WILD-TYPE" "CTNNA2 WILD-TYPE" 
      TCGA-50-5068       TCGA-50-5072       TCGA-50-5930       TCGA-50-5931 
"CTNNA2 WILD-TYPE" "CTNNA2 WILD-TYPE" "CTNNA2 WILD-TYPE" "CTNNA2 WILD-TYPE" 
      TCGA-50-5932       TCGA-50-5933       TCGA-50-5935       TCGA-50-5936 
"CTNNA2 WILD-TYPE" "CTNNA2 WILD-TYPE" "CTNNA2 WILD-TYPE" "CTNNA2 WILD-TYPE" 
      TCGA-50-5939       TCGA-50-5941       TCGA-50-5942       TCGA-50-5944 
"CTNNA2 WILD-TYPE"   "CTNNA2 MUTATED" "CTNNA2 WILD-TYPE" "CTNNA2 WILD-TYPE" 
      TCGA-50-5946       TCGA-50-6590       TCGA-50-6591       TCGA-50-6592 
"CTNNA2 WILD-TYPE"   "CTNNA2 MUTATED" "CTNNA2 WILD-TYPE" "CTNNA2 WILD-TYPE" 
      TCGA-50-6593       TCGA-50-6594       TCGA-50-6595       TCGA-50-6597 
"CTNNA2 WILD-TYPE" "CTNNA2 WILD-TYPE" "CTNNA2 WILD-TYPE" "CTNNA2 WILD-TYPE" 
      TCGA-55-1592       TCGA-55-1594       TCGA-55-1595       TCGA-55-1596 
"CTNNA2 WILD-TYPE" "CTNNA2 WILD-TYPE"   "CTNNA2 MUTATED" "CTNNA2 WILD-TYPE" 
      TCGA-55-5899       TCGA-55-6543       TCGA-55-6642       TCGA-55-6712 
"CTNNA2 WILD-TYPE" "CTNNA2 WILD-TYPE" "CTNNA2 WILD-TYPE" "CTNNA2 WILD-TYPE" 
      TCGA-64-1676       TCGA-64-1677       TCGA-64-1678       TCGA-64-1680 
"CTNNA2 WILD-TYPE" "CTNNA2 WILD-TYPE" "CTNNA2 WILD-TYPE" "CTNNA2 WILD-TYPE" 
      TCGA-64-5774       TCGA-64-5775       TCGA-64-5778       TCGA-64-5779 
"CTNNA2 WILD-TYPE" "CTNNA2 WILD-TYPE" "CTNNA2 WILD-TYPE" "CTNNA2 WILD-TYPE" 
      TCGA-64-5781       TCGA-64-5815       TCGA-67-3770       TCGA-67-3771 
"CTNNA2 WILD-TYPE" "CTNNA2 WILD-TYPE" "CTNNA2 WILD-TYPE" "CTNNA2 WILD-TYPE" 
      TCGA-67-3772       TCGA-67-3773       TCGA-67-3774       TCGA-67-6215 
"CTNNA2 WILD-TYPE" "CTNNA2 WILD-TYPE" "CTNNA2 WILD-TYPE" "CTNNA2 WILD-TYPE" 
      TCGA-67-6216       TCGA-67-6217       TCGA-71-6725       TCGA-73-4658 
"CTNNA2 WILD-TYPE" "CTNNA2 WILD-TYPE" "CTNNA2 WILD-TYPE" "CTNNA2 WILD-TYPE" 
      TCGA-73-4659       TCGA-73-4662       TCGA-73-4666       TCGA-73-4668 
"CTNNA2 WILD-TYPE" "CTNNA2 WILD-TYPE" "CTNNA2 WILD-TYPE" "CTNNA2 WILD-TYPE" 
      TCGA-73-4670       TCGA-73-4675       TCGA-73-4676       TCGA-73-4677 
"CTNNA2 WILD-TYPE" "CTNNA2 WILD-TYPE" "CTNNA2 WILD-TYPE" "CTNNA2 WILD-TYPE" 
      TCGA-91-6828       TCGA-91-6829       TCGA-91-6831       TCGA-91-6835 
"CTNNA2 WILD-TYPE"   "CTNNA2 MUTATED" "CTNNA2 WILD-TYPE" "CTNNA2 WILD-TYPE" 
      TCGA-91-6836 
  "CTNNA2 MUTATED" 
      TCGA-05-4249       TCGA-05-4250       TCGA-05-4382       TCGA-05-4384 
"CTNNA2 WILD-TYPE"   "CTNNA2 MUTATED" "CTNNA2 WILD-TYPE" "CTNNA2 WILD-TYPE" 
      TCGA-05-4390       TCGA-05-4396       TCGA-05-4397       TCGA-05-4398 
  "CTNNA2 MUTATED"   "CTNNA2 MUTATED" "CTNNA2 WILD-TYPE" "CTNNA2 WILD-TYPE" 
      TCGA-05-4402       TCGA-05-4405       TCGA-05-4415       TCGA-05-4417 
"CTNNA2 WILD-TYPE" "CTNNA2 WILD-TYPE" "CTNNA2 WILD-TYPE" "CTNNA2 WILD-TYPE" 
      TCGA-05-4418       TCGA-05-4420       TCGA-05-4424       TCGA-05-4426 
"CTNNA2 WILD-TYPE" "CTNNA2 WILD-TYPE" "CTNNA2 WILD-TYPE" "CTNNA2 WILD-TYPE" 
      TCGA-05-4427       TCGA-05-4430       TCGA-05-4432       TCGA-05-4433 
  "CTNNA2 MUTATED" "CTNNA2 WILD-TYPE"   "CTNNA2 MUTATED" "CTNNA2 WILD-TYPE" 
      TCGA-05-4434       TCGA-05-5420       TCGA-05-5423       TCGA-05-5425 
"CTNNA2 WILD-TYPE" "CTNNA2 WILD-TYPE" "CTNNA2 WILD-TYPE" "CTNNA2 WILD-TYPE" 
      TCGA-05-5429       TCGA-05-5715       TCGA-35-3615       TCGA-35-4122 
"CTNNA2 WILD-TYPE"   "CTNNA2 MUTATED" "CTNNA2 WILD-TYPE" "CTNNA2 WILD-TYPE" 
      TCGA-35-4123       TCGA-35-5375       TCGA-38-4625       TCGA-38-4626 
"CTNNA2 WILD-TYPE" "CTNNA2 WILD-TYPE" "CTNNA2 WILD-TYPE" "CTNNA2 WILD-TYPE" 
      TCGA-38-4627       TCGA-38-4628       TCGA-38-4629       TCGA-38-4630 
"CTNNA2 WILD-TYPE" "CTNNA2 WILD-TYPE" "CTNNA2 WILD-TYPE" "CTNNA2 WILD-TYPE" 
      TCGA-38-4631       TCGA-38-4632       TCGA-38-6178       TCGA-44-2655 
"CTNNA2 WILD-TYPE" "CTNNA2 WILD-TYPE" "CTNNA2 WILD-TYPE" "CTNNA2 WILD-TYPE" 
      TCGA-44-2656       TCGA-44-2657       TCGA-44-2659       TCGA-44-2661 
  "CTNNA2 MUTATED" "CTNNA2 WILD-TYPE" "CTNNA2 WILD-TYPE" "CTNNA2 WILD-TYPE" 
      TCGA-44-2662       TCGA-44-2665       TCGA-44-2666       TCGA-44-2668 
"CTNNA2 WILD-TYPE" "CTNNA2 WILD-TYPE" "CTNNA2 WILD-TYPE" "CTNNA2 WILD-TYPE" 
      TCGA-44-3396       TCGA-44-3398       TCGA-44-3918       TCGA-44-3919 
"CTNNA2 WILD-TYPE" "CTNNA2 WILD-TYPE" "CTNNA2 WILD-TYPE" "CTNNA2 WILD-TYPE" 
      TCGA-44-4112       TCGA-44-5643       TCGA-44-5645       TCGA-44-6144 
"CTNNA2 WILD-TYPE"   "CTNNA2 MUTATED" "CTNNA2 WILD-TYPE" "CTNNA2 WILD-TYPE" 
      TCGA-44-6145       TCGA-44-6146       TCGA-44-6147       TCGA-44-6148 
"CTNNA2 WILD-TYPE" "CTNNA2 WILD-TYPE" "CTNNA2 WILD-TYPE" "CTNNA2 WILD-TYPE" 
      TCGA-44-6774       TCGA-44-6775       TCGA-44-6776       TCGA-44-6777 
"CTNNA2 WILD-TYPE" "CTNNA2 WILD-TYPE"   "CTNNA2 MUTATED" "CTNNA2 WILD-TYPE" 
      TCGA-44-6778       TCGA-44-6779       TCGA-49-4486       TCGA-49-4487 
"CTNNA2 WILD-TYPE" "CTNNA2 WILD-TYPE" "CTNNA2 WILD-TYPE" "CTNNA2 WILD-TYPE" 
      TCGA-49-4488       TCGA-49-4490       TCGA-49-4494       TCGA-49-4501 
"CTNNA2 WILD-TYPE" "CTNNA2 WILD-TYPE" "CTNNA2 WILD-TYPE" "CTNNA2 WILD-TYPE" 
      TCGA-49-4505       TCGA-49-4506       TCGA-49-4507       TCGA-49-4510 
"CTNNA2 WILD-TYPE" "CTNNA2 WILD-TYPE" "CTNNA2 WILD-TYPE" "CTNNA2 WILD-TYPE" 
      TCGA-49-4512       TCGA-49-4514       TCGA-49-6742       TCGA-49-6743 
"CTNNA2 WILD-TYPE" "CTNNA2 WILD-TYPE" "CTNNA2 WILD-TYPE"   "CTNNA2 MUTATED" 
      TCGA-49-6744       TCGA-49-6745       TCGA-50-5044       TCGA-50-5045 
"CTNNA2 WILD-TYPE"   "CTNNA2 MUTATED" "CTNNA2 WILD-TYPE"   "CTNNA2 MUTATED" 
      TCGA-50-5049       TCGA-50-5051       TCGA-50-5055       TCGA-50-5066 
"CTNNA2 WILD-TYPE" "CTNNA2 WILD-TYPE" "CTNNA2 WILD-TYPE" "CTNNA2 WILD-TYPE" 
      TCGA-50-5068       TCGA-50-5072       TCGA-50-5930       TCGA-50-5931 
"CTNNA2 WILD-TYPE" "CTNNA2 WILD-TYPE" "CTNNA2 WILD-TYPE" "CTNNA2 WILD-TYPE" 
      TCGA-50-5932       TCGA-50-5933       TCGA-50-5935       TCGA-50-5936 
"CTNNA2 WILD-TYPE" "CTNNA2 WILD-TYPE" "CTNNA2 WILD-TYPE" "CTNNA2 WILD-TYPE" 
      TCGA-50-5939       TCGA-50-5941       TCGA-50-5942       TCGA-50-5944 
"CTNNA2 WILD-TYPE"   "CTNNA2 MUTATED" "CTNNA2 WILD-TYPE" "CTNNA2 WILD-TYPE" 
      TCGA-50-5946       TCGA-50-6590       TCGA-50-6591       TCGA-50-6592 
"CTNNA2 WILD-TYPE"   "CTNNA2 MUTATED" "CTNNA2 WILD-TYPE" "CTNNA2 WILD-TYPE" 
      TCGA-50-6593       TCGA-50-6594       TCGA-50-6595       TCGA-50-6597 
"CTNNA2 WILD-TYPE" "CTNNA2 WILD-TYPE" "CTNNA2 WILD-TYPE" "CTNNA2 WILD-TYPE" 
      TCGA-55-1592       TCGA-55-1594       TCGA-55-1595       TCGA-55-1596 
"CTNNA2 WILD-TYPE" "CTNNA2 WILD-TYPE"   "CTNNA2 MUTATED" "CTNNA2 WILD-TYPE" 
      TCGA-55-5899       TCGA-55-6543       TCGA-55-6642       TCGA-55-6712 
"CTNNA2 WILD-TYPE" "CTNNA2 WILD-TYPE" "CTNNA2 WILD-TYPE" "CTNNA2 WILD-TYPE" 
      TCGA-64-1676       TCGA-64-1677       TCGA-64-1678       TCGA-64-1680 
"CTNNA2 WILD-TYPE" "CTNNA2 WILD-TYPE" "CTNNA2 WILD-TYPE" "CTNNA2 WILD-TYPE" 
      TCGA-64-5774       TCGA-64-5775       TCGA-64-5778       TCGA-64-5779 
"CTNNA2 WILD-TYPE" "CTNNA2 WILD-TYPE" "CTNNA2 WILD-TYPE" "CTNNA2 WILD-TYPE" 
      TCGA-64-5781       TCGA-64-5815       TCGA-67-3770       TCGA-67-3771 
"CTNNA2 WILD-TYPE" "CTNNA2 WILD-TYPE" "CTNNA2 WILD-TYPE" "CTNNA2 WILD-TYPE" 
      TCGA-67-3772       TCGA-67-3773       TCGA-67-3774       TCGA-67-6215 
"CTNNA2 WILD-TYPE" "CTNNA2 WILD-TYPE" "CTNNA2 WILD-TYPE" "CTNNA2 WILD-TYPE" 
      TCGA-67-6216       TCGA-67-6217       TCGA-71-6725       TCGA-73-4658 
"CTNNA2 WILD-TYPE" "CTNNA2 WILD-TYPE" "CTNNA2 WILD-TYPE" "CTNNA2 WILD-TYPE" 
      TCGA-73-4659       TCGA-73-4662       TCGA-73-4666       TCGA-73-4668 
"CTNNA2 WILD-TYPE" "CTNNA2 WILD-TYPE" "CTNNA2 WILD-TYPE" "CTNNA2 WILD-TYPE" 
      TCGA-73-4670       TCGA-73-4675       TCGA-73-4676       TCGA-73-4677 
"CTNNA2 WILD-TYPE" "CTNNA2 WILD-TYPE" "CTNNA2 WILD-TYPE" "CTNNA2 WILD-TYPE" 
      TCGA-91-6828       TCGA-91-6829       TCGA-91-6831       TCGA-91-6835 
"CTNNA2 WILD-TYPE"   "CTNNA2 MUTATED" "CTNNA2 WILD-TYPE" "CTNNA2 WILD-TYPE" 
      TCGA-91-6836 
  "CTNNA2 MUTATED" 
[1] "hr=" "1.6"
D130V2, continuous
D130V3, binary
[1] "tbl2"
                  cls
clus               [,1] [,2]
  CTNNA2 MUTATED     11    9
  CTNNA2 WILD-TYPE   82   70
        clus
vv       CTNNA2 MUTATED CTNNA2 WILD-TYPE
  FEMALE             11               82
  MALE                9               70
D130V4, continuous
D130V5, multiclass
D130V6, multiclass
    clus
vv   CTNNA2 MUTATED CTNNA2 WILD-TYPE
  T1              5               36
  T2             13               95
  T3              1               13
  T4              1                7
D130V7, multiclass
       clus
vv      CTNNA2 MUTATED CTNNA2 WILD-TYPE
  N0                10               85
  N1                 6               31
  N2+N3              4               31
D130V8, multiclass
    clus
vv   CTNNA2 MUTATED CTNNA2 WILD-TYPE
  M0             15              122
  M1              0                9
  MX              5               17
D130V9, multiclass
     clus
vv    CTNNA2 MUTATED CTNNA2 WILD-TYPE
  I               11               77
  II               3               30
  III              6               33
  IV               0                9
D130V10, binary
[1] "tbl2"
                  cls
clus               [,1] [,2]
  CTNNA2 MUTATED      2   18
  CTNNA2 WILD-TYPE   14  138
     clus
vv    CTNNA2 MUTATED CTNNA2 WILD-TYPE
  NO               2               14
  YES             18              138
D130V11, continuous
D130V12, continuous
D130V13, multiclass
                                             clus
vv                                            CTNNA2 MUTATED CTNNA2 WILD-TYPE
  CURRENT REFORMED SMOKER FOR < OR = 15 YEARS             11               51
  CURRENT REFORMED SMOKER FOR > 15 YEARS                   3               43
  CURRENT SMOKER                                           4               24
  LIFELONG NON-SMOKER                                      1               23
D130V14, continuous

Clustering(131) Variable = GBA3 MUTATION ANALYSIS
D131V1, survival
                sevent
clus2             0  1
  GBA3 MUTATED    3  5
  GBA3 WILD-TYPE 96 45
  GBA3 MUTATED GBA3 WILD-TYPE 
             8            141 
  GBA3 MUTATED GBA3 WILD-TYPE 
             5             45 
$`GBA3 MUTATED`
TCGA-38-4631 TCGA-44-6145 TCGA-49-4514 TCGA-50-5931 TCGA-64-5778 TCGA-73-4658 
       11.64         3.35        43.20         8.78        30.44        52.57 
TCGA-73-4677 TCGA-91-6829 
        1.25        41.33 

$`GBA3 WILD-TYPE`
TCGA-05-4249 TCGA-05-4250 TCGA-05-4382 TCGA-05-4384 TCGA-05-4390 TCGA-05-4396 
       38.07         3.98        19.92        14.01        37.02         9.96 
TCGA-05-4397 TCGA-05-4398 TCGA-05-4402 TCGA-05-4405 TCGA-05-4415 TCGA-05-4417 
       24.03        47.05         8.02        20.05         2.96        14.93 
TCGA-05-4418 TCGA-05-4420 TCGA-05-4424 TCGA-05-4426 TCGA-05-4427 TCGA-05-4430 
        8.98        29.95        30.02        26.01        26.01        25.02 
TCGA-05-4432 TCGA-05-4433 TCGA-05-4434 TCGA-05-5420 TCGA-05-5423 TCGA-05-5425 
       25.02        24.00        15.02         1.02         4.96         2.96 
TCGA-05-5429 TCGA-05-5715 TCGA-35-3615 TCGA-35-4122 TCGA-35-4123 TCGA-35-5375 
        0.99         2.04         0.46         7.36         5.95         8.68 
TCGA-38-4625 TCGA-38-4626 TCGA-38-4627 TCGA-38-4628 TCGA-38-4629 TCGA-38-4630 
       47.61        85.32        37.71        49.02        28.37        35.28 
TCGA-38-4632 TCGA-38-6178 TCGA-44-2655 TCGA-44-2656 TCGA-44-2657 TCGA-44-2659 
       44.61         5.19        18.87        19.10        13.15        17.39 
TCGA-44-2661 TCGA-44-2662 TCGA-44-2665 TCGA-44-2666 TCGA-44-2668 TCGA-44-3396 
        3.39        15.78        13.15         3.19         8.09        10.22 
TCGA-44-3398 TCGA-44-3918 TCGA-44-3919 TCGA-44-4112 TCGA-44-5643 TCGA-44-5645 
        8.32         6.44         6.21         4.60         3.48         6.84 
TCGA-44-6144 TCGA-44-6146 TCGA-44-6147 TCGA-44-6148 TCGA-44-6774 TCGA-44-6775 
        0.30         9.93         7.76         3.12         5.42         2.70 
TCGA-44-6776 TCGA-44-6777 TCGA-44-6778 TCGA-44-6779 TCGA-49-4486 TCGA-49-4487 
       63.72        32.45        36.49        16.41        76.21        28.11 
TCGA-49-4488 TCGA-49-4490 TCGA-49-4494 TCGA-49-4501 TCGA-49-4505 TCGA-49-4506 
       28.57        12.66        35.54        46.72        14.07        32.84 
TCGA-49-4507 TCGA-49-4510 TCGA-49-4512 TCGA-49-6742 TCGA-49-6743 TCGA-49-6744 
        8.81        29.46        29.75        15.02        12.13        12.99 
TCGA-49-6745 TCGA-50-5044 TCGA-50-5045 TCGA-50-5049 TCGA-50-5051 TCGA-50-5055 
        4.93        20.48        71.47        48.82        14.96        25.81 
TCGA-50-5066 TCGA-50-5068 TCGA-50-5072 TCGA-50-5930 TCGA-50-5932 TCGA-50-5933 
        9.76        49.28         8.05         9.27        35.87        77.88 
TCGA-50-5935 TCGA-50-5936 TCGA-50-5939 TCGA-50-5941 TCGA-50-5942 TCGA-50-5944 
       21.47         8.45        15.12         9.37         4.44        12.26 
TCGA-50-5946 TCGA-50-6590 TCGA-50-6591 TCGA-50-6592 TCGA-50-6593 TCGA-50-6594 
       11.47        42.31         3.88        25.51        11.05        12.16 
TCGA-50-6595 TCGA-50-6597 TCGA-55-1592 TCGA-55-1594 TCGA-55-1595 TCGA-55-1596 
        6.21        33.37        23.05        38.73        48.62        45.17 
TCGA-55-5899 TCGA-55-6543 TCGA-55-6642 TCGA-55-6712 TCGA-64-1676 TCGA-64-1677 
        2.86         0.07        32.61         0.79        56.81        20.65 
TCGA-64-1678 TCGA-64-1680 TCGA-64-5774 TCGA-64-5775 TCGA-64-5779 TCGA-64-5781 
       39.09        37.02        83.84         0.10        16.67        39.52 
TCGA-64-5815 TCGA-67-3770 TCGA-67-3771 TCGA-67-3772 TCGA-67-3773 TCGA-67-3774 
        7.33         0.99         1.97         0.59         2.04         0.59 
TCGA-67-6215 TCGA-67-6216 TCGA-67-6217 TCGA-71-6725 TCGA-73-4659 TCGA-73-4662 
        0.89         0.69        13.87         2.01        23.38        29.95 
TCGA-73-4666 TCGA-73-4668 TCGA-73-4670 TCGA-73-4675 TCGA-73-4676 TCGA-91-6828 
       20.28        15.35         0.46         1.32         4.01         1.22 
TCGA-91-6831 TCGA-91-6835 TCGA-91-6836 
        1.28         1.15         0.36 

  GBA3 MUTATED GBA3 WILD-TYPE 
          1.25           0.07 
  GBA3 MUTATED GBA3 WILD-TYPE 
         52.57          85.32 
  GBA3 MUTATED GBA3 WILD-TYPE 
         21.04          13.87 
[1] "1.2 - 52.6 (21.0)" "0.1 - 85.3 (13.9)"
    TCGA-05-4249     TCGA-05-4250     TCGA-05-4382     TCGA-05-4384 
"GBA3 WILD-TYPE" "GBA3 WILD-TYPE" "GBA3 WILD-TYPE" "GBA3 WILD-TYPE" 
    TCGA-05-4390     TCGA-05-4396     TCGA-05-4397     TCGA-05-4398 
"GBA3 WILD-TYPE" "GBA3 WILD-TYPE" "GBA3 WILD-TYPE" "GBA3 WILD-TYPE" 
    TCGA-05-4402     TCGA-05-4405     TCGA-05-4415     TCGA-05-4417 
"GBA3 WILD-TYPE" "GBA3 WILD-TYPE" "GBA3 WILD-TYPE" "GBA3 WILD-TYPE" 
    TCGA-05-4418     TCGA-05-4420     TCGA-05-4424     TCGA-05-4426 
"GBA3 WILD-TYPE" "GBA3 WILD-TYPE" "GBA3 WILD-TYPE" "GBA3 WILD-TYPE" 
    TCGA-05-4427     TCGA-05-4430     TCGA-05-4432     TCGA-05-4433 
"GBA3 WILD-TYPE" "GBA3 WILD-TYPE" "GBA3 WILD-TYPE" "GBA3 WILD-TYPE" 
    TCGA-05-4434     TCGA-05-5420     TCGA-05-5423     TCGA-05-5425 
"GBA3 WILD-TYPE" "GBA3 WILD-TYPE" "GBA3 WILD-TYPE" "GBA3 WILD-TYPE" 
    TCGA-05-5429     TCGA-05-5715     TCGA-35-3615     TCGA-35-4122 
"GBA3 WILD-TYPE" "GBA3 WILD-TYPE" "GBA3 WILD-TYPE" "GBA3 WILD-TYPE" 
    TCGA-35-4123     TCGA-35-5375     TCGA-38-4625     TCGA-38-4626 
"GBA3 WILD-TYPE" "GBA3 WILD-TYPE" "GBA3 WILD-TYPE" "GBA3 WILD-TYPE" 
    TCGA-38-4627     TCGA-38-4628     TCGA-38-4629     TCGA-38-4630 
"GBA3 WILD-TYPE" "GBA3 WILD-TYPE" "GBA3 WILD-TYPE" "GBA3 WILD-TYPE" 
    TCGA-38-4631     TCGA-38-4632     TCGA-38-6178     TCGA-44-2655 
  "GBA3 MUTATED" "GBA3 WILD-TYPE" "GBA3 WILD-TYPE" "GBA3 WILD-TYPE" 
    TCGA-44-2656     TCGA-44-2657     TCGA-44-2659     TCGA-44-2661 
"GBA3 WILD-TYPE" "GBA3 WILD-TYPE" "GBA3 WILD-TYPE" "GBA3 WILD-TYPE" 
    TCGA-44-2662     TCGA-44-2665     TCGA-44-2666     TCGA-44-2668 
"GBA3 WILD-TYPE" "GBA3 WILD-TYPE" "GBA3 WILD-TYPE" "GBA3 WILD-TYPE" 
    TCGA-44-3396     TCGA-44-3398     TCGA-44-3918     TCGA-44-3919 
"GBA3 WILD-TYPE" "GBA3 WILD-TYPE" "GBA3 WILD-TYPE" "GBA3 WILD-TYPE" 
    TCGA-44-4112     TCGA-44-5643     TCGA-44-5645     TCGA-44-6144 
"GBA3 WILD-TYPE" "GBA3 WILD-TYPE" "GBA3 WILD-TYPE" "GBA3 WILD-TYPE" 
    TCGA-44-6145     TCGA-44-6146     TCGA-44-6147     TCGA-44-6148 
  "GBA3 MUTATED" "GBA3 WILD-TYPE" "GBA3 WILD-TYPE" "GBA3 WILD-TYPE" 
    TCGA-44-6774     TCGA-44-6775     TCGA-44-6776     TCGA-44-6777 
"GBA3 WILD-TYPE" "GBA3 WILD-TYPE" "GBA3 WILD-TYPE" "GBA3 WILD-TYPE" 
    TCGA-44-6778     TCGA-44-6779     TCGA-49-4486     TCGA-49-4487 
"GBA3 WILD-TYPE" "GBA3 WILD-TYPE" "GBA3 WILD-TYPE" "GBA3 WILD-TYPE" 
    TCGA-49-4488     TCGA-49-4490     TCGA-49-4494     TCGA-49-4501 
"GBA3 WILD-TYPE" "GBA3 WILD-TYPE" "GBA3 WILD-TYPE" "GBA3 WILD-TYPE" 
    TCGA-49-4505     TCGA-49-4506     TCGA-49-4507     TCGA-49-4510 
"GBA3 WILD-TYPE" "GBA3 WILD-TYPE" "GBA3 WILD-TYPE" "GBA3 WILD-TYPE" 
    TCGA-49-4512     TCGA-49-4514     TCGA-49-6742     TCGA-49-6743 
"GBA3 WILD-TYPE"   "GBA3 MUTATED" "GBA3 WILD-TYPE" "GBA3 WILD-TYPE" 
    TCGA-49-6744     TCGA-49-6745     TCGA-50-5044     TCGA-50-5045 
"GBA3 WILD-TYPE" "GBA3 WILD-TYPE" "GBA3 WILD-TYPE" "GBA3 WILD-TYPE" 
    TCGA-50-5049     TCGA-50-5051     TCGA-50-5055     TCGA-50-5066 
"GBA3 WILD-TYPE" "GBA3 WILD-TYPE" "GBA3 WILD-TYPE" "GBA3 WILD-TYPE" 
    TCGA-50-5068     TCGA-50-5072     TCGA-50-5930     TCGA-50-5931 
"GBA3 WILD-TYPE" "GBA3 WILD-TYPE" "GBA3 WILD-TYPE"   "GBA3 MUTATED" 
    TCGA-50-5932     TCGA-50-5933     TCGA-50-5935     TCGA-50-5936 
"GBA3 WILD-TYPE" "GBA3 WILD-TYPE" "GBA3 WILD-TYPE" "GBA3 WILD-TYPE" 
    TCGA-50-5939     TCGA-50-5941     TCGA-50-5942     TCGA-50-5944 
"GBA3 WILD-TYPE" "GBA3 WILD-TYPE" "GBA3 WILD-TYPE" "GBA3 WILD-TYPE" 
    TCGA-50-5946     TCGA-50-6590     TCGA-50-6591     TCGA-50-6592 
"GBA3 WILD-TYPE" "GBA3 WILD-TYPE" "GBA3 WILD-TYPE" "GBA3 WILD-TYPE" 
    TCGA-50-6593     TCGA-50-6594     TCGA-50-6595     TCGA-50-6597 
"GBA3 WILD-TYPE" "GBA3 WILD-TYPE" "GBA3 WILD-TYPE" "GBA3 WILD-TYPE" 
    TCGA-55-1592     TCGA-55-1594     TCGA-55-1595     TCGA-55-1596 
"GBA3 WILD-TYPE" "GBA3 WILD-TYPE" "GBA3 WILD-TYPE" "GBA3 WILD-TYPE" 
    TCGA-55-5899     TCGA-55-6543     TCGA-55-6642     TCGA-55-6712 
"GBA3 WILD-TYPE" "GBA3 WILD-TYPE" "GBA3 WILD-TYPE" "GBA3 WILD-TYPE" 
    TCGA-64-1676     TCGA-64-1677     TCGA-64-1678     TCGA-64-1680 
"GBA3 WILD-TYPE" "GBA3 WILD-TYPE" "GBA3 WILD-TYPE" "GBA3 WILD-TYPE" 
    TCGA-64-5774     TCGA-64-5775     TCGA-64-5778     TCGA-64-5779 
"GBA3 WILD-TYPE" "GBA3 WILD-TYPE"   "GBA3 MUTATED" "GBA3 WILD-TYPE" 
    TCGA-64-5781     TCGA-64-5815     TCGA-67-3770     TCGA-67-3771 
"GBA3 WILD-TYPE" "GBA3 WILD-TYPE" "GBA3 WILD-TYPE" "GBA3 WILD-TYPE" 
    TCGA-67-3772     TCGA-67-3773     TCGA-67-3774     TCGA-67-6215 
"GBA3 WILD-TYPE" "GBA3 WILD-TYPE" "GBA3 WILD-TYPE" "GBA3 WILD-TYPE" 
    TCGA-67-6216     TCGA-67-6217     TCGA-71-6725     TCGA-73-4658 
"GBA3 WILD-TYPE" "GBA3 WILD-TYPE" "GBA3 WILD-TYPE"   "GBA3 MUTATED" 
    TCGA-73-4659     TCGA-73-4662     TCGA-73-4666     TCGA-73-4668 
"GBA3 WILD-TYPE" "GBA3 WILD-TYPE" "GBA3 WILD-TYPE" "GBA3 WILD-TYPE" 
    TCGA-73-4670     TCGA-73-4675     TCGA-73-4676     TCGA-73-4677 
"GBA3 WILD-TYPE" "GBA3 WILD-TYPE" "GBA3 WILD-TYPE"   "GBA3 MUTATED" 
    TCGA-91-6828     TCGA-91-6829     TCGA-91-6831     TCGA-91-6835 
"GBA3 WILD-TYPE"   "GBA3 MUTATED" "GBA3 WILD-TYPE" "GBA3 WILD-TYPE" 
    TCGA-91-6836 
"GBA3 WILD-TYPE" 
    TCGA-05-4249     TCGA-05-4250     TCGA-05-4382     TCGA-05-4384 
"GBA3 WILD-TYPE" "GBA3 WILD-TYPE" "GBA3 WILD-TYPE" "GBA3 WILD-TYPE" 
    TCGA-05-4390     TCGA-05-4396     TCGA-05-4397     TCGA-05-4398 
"GBA3 WILD-TYPE" "GBA3 WILD-TYPE" "GBA3 WILD-TYPE" "GBA3 WILD-TYPE" 
    TCGA-05-4402     TCGA-05-4405     TCGA-05-4415     TCGA-05-4417 
"GBA3 WILD-TYPE" "GBA3 WILD-TYPE" "GBA3 WILD-TYPE" "GBA3 WILD-TYPE" 
    TCGA-05-4418     TCGA-05-4420     TCGA-05-4424     TCGA-05-4426 
"GBA3 WILD-TYPE" "GBA3 WILD-TYPE" "GBA3 WILD-TYPE" "GBA3 WILD-TYPE" 
    TCGA-05-4427     TCGA-05-4430     TCGA-05-4432     TCGA-05-4433 
"GBA3 WILD-TYPE" "GBA3 WILD-TYPE" "GBA3 WILD-TYPE" "GBA3 WILD-TYPE" 
    TCGA-05-4434     TCGA-05-5420     TCGA-05-5423     TCGA-05-5425 
"GBA3 WILD-TYPE" "GBA3 WILD-TYPE" "GBA3 WILD-TYPE" "GBA3 WILD-TYPE" 
    TCGA-05-5429     TCGA-05-5715     TCGA-35-3615     TCGA-35-4122 
"GBA3 WILD-TYPE" "GBA3 WILD-TYPE" "GBA3 WILD-TYPE" "GBA3 WILD-TYPE" 
    TCGA-35-4123     TCGA-35-5375     TCGA-38-4625     TCGA-38-4626 
"GBA3 WILD-TYPE" "GBA3 WILD-TYPE" "GBA3 WILD-TYPE" "GBA3 WILD-TYPE" 
    TCGA-38-4627     TCGA-38-4628     TCGA-38-4629     TCGA-38-4630 
"GBA3 WILD-TYPE" "GBA3 WILD-TYPE" "GBA3 WILD-TYPE" "GBA3 WILD-TYPE" 
    TCGA-38-4631     TCGA-38-4632     TCGA-38-6178     TCGA-44-2655 
  "GBA3 MUTATED" "GBA3 WILD-TYPE" "GBA3 WILD-TYPE" "GBA3 WILD-TYPE" 
    TCGA-44-2656     TCGA-44-2657     TCGA-44-2659     TCGA-44-2661 
"GBA3 WILD-TYPE" "GBA3 WILD-TYPE" "GBA3 WILD-TYPE" "GBA3 WILD-TYPE" 
    TCGA-44-2662     TCGA-44-2665     TCGA-44-2666     TCGA-44-2668 
"GBA3 WILD-TYPE" "GBA3 WILD-TYPE" "GBA3 WILD-TYPE" "GBA3 WILD-TYPE" 
    TCGA-44-3396     TCGA-44-3398     TCGA-44-3918     TCGA-44-3919 
"GBA3 WILD-TYPE" "GBA3 WILD-TYPE" "GBA3 WILD-TYPE" "GBA3 WILD-TYPE" 
    TCGA-44-4112     TCGA-44-5643     TCGA-44-5645     TCGA-44-6144 
"GBA3 WILD-TYPE" "GBA3 WILD-TYPE" "GBA3 WILD-TYPE" "GBA3 WILD-TYPE" 
    TCGA-44-6145     TCGA-44-6146     TCGA-44-6147     TCGA-44-6148 
  "GBA3 MUTATED" "GBA3 WILD-TYPE" "GBA3 WILD-TYPE" "GBA3 WILD-TYPE" 
    TCGA-44-6774     TCGA-44-6775     TCGA-44-6776     TCGA-44-6777 
"GBA3 WILD-TYPE" "GBA3 WILD-TYPE" "GBA3 WILD-TYPE" "GBA3 WILD-TYPE" 
    TCGA-44-6778     TCGA-44-6779     TCGA-49-4486     TCGA-49-4487 
"GBA3 WILD-TYPE" "GBA3 WILD-TYPE" "GBA3 WILD-TYPE" "GBA3 WILD-TYPE" 
    TCGA-49-4488     TCGA-49-4490     TCGA-49-4494     TCGA-49-4501 
"GBA3 WILD-TYPE" "GBA3 WILD-TYPE" "GBA3 WILD-TYPE" "GBA3 WILD-TYPE" 
    TCGA-49-4505     TCGA-49-4506     TCGA-49-4507     TCGA-49-4510 
"GBA3 WILD-TYPE" "GBA3 WILD-TYPE" "GBA3 WILD-TYPE" "GBA3 WILD-TYPE" 
    TCGA-49-4512     TCGA-49-4514     TCGA-49-6742     TCGA-49-6743 
"GBA3 WILD-TYPE"   "GBA3 MUTATED" "GBA3 WILD-TYPE" "GBA3 WILD-TYPE" 
    TCGA-49-6744     TCGA-49-6745     TCGA-50-5044     TCGA-50-5045 
"GBA3 WILD-TYPE" "GBA3 WILD-TYPE" "GBA3 WILD-TYPE" "GBA3 WILD-TYPE" 
    TCGA-50-5049     TCGA-50-5051     TCGA-50-5055     TCGA-50-5066 
"GBA3 WILD-TYPE" "GBA3 WILD-TYPE" "GBA3 WILD-TYPE" "GBA3 WILD-TYPE" 
    TCGA-50-5068     TCGA-50-5072     TCGA-50-5930     TCGA-50-5931 
"GBA3 WILD-TYPE" "GBA3 WILD-TYPE" "GBA3 WILD-TYPE"   "GBA3 MUTATED" 
    TCGA-50-5932     TCGA-50-5933     TCGA-50-5935     TCGA-50-5936 
"GBA3 WILD-TYPE" "GBA3 WILD-TYPE" "GBA3 WILD-TYPE" "GBA3 WILD-TYPE" 
    TCGA-50-5939     TCGA-50-5941     TCGA-50-5942     TCGA-50-5944 
"GBA3 WILD-TYPE" "GBA3 WILD-TYPE" "GBA3 WILD-TYPE" "GBA3 WILD-TYPE" 
    TCGA-50-5946     TCGA-50-6590     TCGA-50-6591     TCGA-50-6592 
"GBA3 WILD-TYPE" "GBA3 WILD-TYPE" "GBA3 WILD-TYPE" "GBA3 WILD-TYPE" 
    TCGA-50-6593     TCGA-50-6594     TCGA-50-6595     TCGA-50-6597 
"GBA3 WILD-TYPE" "GBA3 WILD-TYPE" "GBA3 WILD-TYPE" "GBA3 WILD-TYPE" 
    TCGA-55-1592     TCGA-55-1594     TCGA-55-1595     TCGA-55-1596 
"GBA3 WILD-TYPE" "GBA3 WILD-TYPE" "GBA3 WILD-TYPE" "GBA3 WILD-TYPE" 
    TCGA-55-5899     TCGA-55-6543     TCGA-55-6642     TCGA-55-6712 
"GBA3 WILD-TYPE" "GBA3 WILD-TYPE" "GBA3 WILD-TYPE" "GBA3 WILD-TYPE" 
    TCGA-64-1676     TCGA-64-1677     TCGA-64-1678     TCGA-64-1680 
"GBA3 WILD-TYPE" "GBA3 WILD-TYPE" "GBA3 WILD-TYPE" "GBA3 WILD-TYPE" 
    TCGA-64-5774     TCGA-64-5775     TCGA-64-5778     TCGA-64-5779 
"GBA3 WILD-TYPE" "GBA3 WILD-TYPE"   "GBA3 MUTATED" "GBA3 WILD-TYPE" 
    TCGA-64-5781     TCGA-64-5815     TCGA-67-3770     TCGA-67-3771 
"GBA3 WILD-TYPE" "GBA3 WILD-TYPE" "GBA3 WILD-TYPE" "GBA3 WILD-TYPE" 
    TCGA-67-3772     TCGA-67-3773     TCGA-67-3774     TCGA-67-6215 
"GBA3 WILD-TYPE" "GBA3 WILD-TYPE" "GBA3 WILD-TYPE" "GBA3 WILD-TYPE" 
    TCGA-67-6216     TCGA-67-6217     TCGA-71-6725     TCGA-73-4658 
"GBA3 WILD-TYPE" "GBA3 WILD-TYPE" "GBA3 WILD-TYPE"   "GBA3 MUTATED" 
    TCGA-73-4659     TCGA-73-4662     TCGA-73-4666     TCGA-73-4668 
"GBA3 WILD-TYPE" "GBA3 WILD-TYPE" "GBA3 WILD-TYPE" "GBA3 WILD-TYPE" 
    TCGA-73-4670     TCGA-73-4675     TCGA-73-4676     TCGA-73-4677 
"GBA3 WILD-TYPE" "GBA3 WILD-TYPE" "GBA3 WILD-TYPE"   "GBA3 MUTATED" 
    TCGA-91-6828     TCGA-91-6829     TCGA-91-6831     TCGA-91-6835 
"GBA3 WILD-TYPE"   "GBA3 MUTATED" "GBA3 WILD-TYPE" "GBA3 WILD-TYPE" 
    TCGA-91-6836 
"GBA3 WILD-TYPE" 
    TCGA-05-4249     TCGA-05-4250     TCGA-05-4382     TCGA-05-4384 
"GBA3 WILD-TYPE" "GBA3 WILD-TYPE" "GBA3 WILD-TYPE" "GBA3 WILD-TYPE" 
    TCGA-05-4390     TCGA-05-4396     TCGA-05-4397     TCGA-05-4398 
"GBA3 WILD-TYPE" "GBA3 WILD-TYPE" "GBA3 WILD-TYPE" "GBA3 WILD-TYPE" 
    TCGA-05-4402     TCGA-05-4405     TCGA-05-4415     TCGA-05-4417 
"GBA3 WILD-TYPE" "GBA3 WILD-TYPE" "GBA3 WILD-TYPE" "GBA3 WILD-TYPE" 
    TCGA-05-4418     TCGA-05-4420     TCGA-05-4424     TCGA-05-4426 
"GBA3 WILD-TYPE" "GBA3 WILD-TYPE" "GBA3 WILD-TYPE" "GBA3 WILD-TYPE" 
    TCGA-05-4427     TCGA-05-4430     TCGA-05-4432     TCGA-05-4433 
"GBA3 WILD-TYPE" "GBA3 WILD-TYPE" "GBA3 WILD-TYPE" "GBA3 WILD-TYPE" 
    TCGA-05-4434     TCGA-05-5420     TCGA-05-5423     TCGA-05-5425 
"GBA3 WILD-TYPE" "GBA3 WILD-TYPE" "GBA3 WILD-TYPE" "GBA3 WILD-TYPE" 
    TCGA-05-5429     TCGA-05-5715     TCGA-35-3615     TCGA-35-4122 
"GBA3 WILD-TYPE" "GBA3 WILD-TYPE" "GBA3 WILD-TYPE" "GBA3 WILD-TYPE" 
    TCGA-35-4123     TCGA-35-5375     TCGA-38-4625     TCGA-38-4626 
"GBA3 WILD-TYPE" "GBA3 WILD-TYPE" "GBA3 WILD-TYPE" "GBA3 WILD-TYPE" 
    TCGA-38-4627     TCGA-38-4628     TCGA-38-4629     TCGA-38-4630 
"GBA3 WILD-TYPE" "GBA3 WILD-TYPE" "GBA3 WILD-TYPE" "GBA3 WILD-TYPE" 
    TCGA-38-4631     TCGA-38-4632     TCGA-38-6178     TCGA-44-2655 
  "GBA3 MUTATED" "GBA3 WILD-TYPE" "GBA3 WILD-TYPE" "GBA3 WILD-TYPE" 
    TCGA-44-2656     TCGA-44-2657     TCGA-44-2659     TCGA-44-2661 
"GBA3 WILD-TYPE" "GBA3 WILD-TYPE" "GBA3 WILD-TYPE" "GBA3 WILD-TYPE" 
    TCGA-44-2662     TCGA-44-2665     TCGA-44-2666     TCGA-44-2668 
"GBA3 WILD-TYPE" "GBA3 WILD-TYPE" "GBA3 WILD-TYPE" "GBA3 WILD-TYPE" 
    TCGA-44-3396     TCGA-44-3398     TCGA-44-3918     TCGA-44-3919 
"GBA3 WILD-TYPE" "GBA3 WILD-TYPE" "GBA3 WILD-TYPE" "GBA3 WILD-TYPE" 
    TCGA-44-4112     TCGA-44-5643     TCGA-44-5645     TCGA-44-6144 
"GBA3 WILD-TYPE" "GBA3 WILD-TYPE" "GBA3 WILD-TYPE" "GBA3 WILD-TYPE" 
    TCGA-44-6145     TCGA-44-6146     TCGA-44-6147     TCGA-44-6148 
  "GBA3 MUTATED" "GBA3 WILD-TYPE" "GBA3 WILD-TYPE" "GBA3 WILD-TYPE" 
    TCGA-44-6774     TCGA-44-6775     TCGA-44-6776     TCGA-44-6777 
"GBA3 WILD-TYPE" "GBA3 WILD-TYPE" "GBA3 WILD-TYPE" "GBA3 WILD-TYPE" 
    TCGA-44-6778     TCGA-44-6779     TCGA-49-4486     TCGA-49-4487 
"GBA3 WILD-TYPE" "GBA3 WILD-TYPE" "GBA3 WILD-TYPE" "GBA3 WILD-TYPE" 
    TCGA-49-4488     TCGA-49-4490     TCGA-49-4494     TCGA-49-4501 
"GBA3 WILD-TYPE" "GBA3 WILD-TYPE" "GBA3 WILD-TYPE" "GBA3 WILD-TYPE" 
    TCGA-49-4505     TCGA-49-4506     TCGA-49-4507     TCGA-49-4510 
"GBA3 WILD-TYPE" "GBA3 WILD-TYPE" "GBA3 WILD-TYPE" "GBA3 WILD-TYPE" 
    TCGA-49-4512     TCGA-49-4514     TCGA-49-6742     TCGA-49-6743 
"GBA3 WILD-TYPE"   "GBA3 MUTATED" "GBA3 WILD-TYPE" "GBA3 WILD-TYPE" 
    TCGA-49-6744     TCGA-49-6745     TCGA-50-5044     TCGA-50-5045 
"GBA3 WILD-TYPE" "GBA3 WILD-TYPE" "GBA3 WILD-TYPE" "GBA3 WILD-TYPE" 
    TCGA-50-5049     TCGA-50-5051     TCGA-50-5055     TCGA-50-5066 
"GBA3 WILD-TYPE" "GBA3 WILD-TYPE" "GBA3 WILD-TYPE" "GBA3 WILD-TYPE" 
    TCGA-50-5068     TCGA-50-5072     TCGA-50-5930     TCGA-50-5931 
"GBA3 WILD-TYPE" "GBA3 WILD-TYPE" "GBA3 WILD-TYPE"   "GBA3 MUTATED" 
    TCGA-50-5932     TCGA-50-5933     TCGA-50-5935     TCGA-50-5936 
"GBA3 WILD-TYPE" "GBA3 WILD-TYPE" "GBA3 WILD-TYPE" "GBA3 WILD-TYPE" 
    TCGA-50-5939     TCGA-50-5941     TCGA-50-5942     TCGA-50-5944 
"GBA3 WILD-TYPE" "GBA3 WILD-TYPE" "GBA3 WILD-TYPE" "GBA3 WILD-TYPE" 
    TCGA-50-5946     TCGA-50-6590     TCGA-50-6591     TCGA-50-6592 
"GBA3 WILD-TYPE" "GBA3 WILD-TYPE" "GBA3 WILD-TYPE" "GBA3 WILD-TYPE" 
    TCGA-50-6593     TCGA-50-6594     TCGA-50-6595     TCGA-50-6597 
"GBA3 WILD-TYPE" "GBA3 WILD-TYPE" "GBA3 WILD-TYPE" "GBA3 WILD-TYPE" 
    TCGA-55-1592     TCGA-55-1594     TCGA-55-1595     TCGA-55-1596 
"GBA3 WILD-TYPE" "GBA3 WILD-TYPE" "GBA3 WILD-TYPE" "GBA3 WILD-TYPE" 
    TCGA-55-5899     TCGA-55-6543     TCGA-55-6642     TCGA-55-6712 
"GBA3 WILD-TYPE" "GBA3 WILD-TYPE" "GBA3 WILD-TYPE" "GBA3 WILD-TYPE" 
    TCGA-64-1676     TCGA-64-1677     TCGA-64-1678     TCGA-64-1680 
"GBA3 WILD-TYPE" "GBA3 WILD-TYPE" "GBA3 WILD-TYPE" "GBA3 WILD-TYPE" 
    TCGA-64-5774     TCGA-64-5775     TCGA-64-5778     TCGA-64-5779 
"GBA3 WILD-TYPE" "GBA3 WILD-TYPE"   "GBA3 MUTATED" "GBA3 WILD-TYPE" 
    TCGA-64-5781     TCGA-64-5815     TCGA-67-3770     TCGA-67-3771 
"GBA3 WILD-TYPE" "GBA3 WILD-TYPE" "GBA3 WILD-TYPE" "GBA3 WILD-TYPE" 
    TCGA-67-3772     TCGA-67-3773     TCGA-67-3774     TCGA-67-6215 
"GBA3 WILD-TYPE" "GBA3 WILD-TYPE" "GBA3 WILD-TYPE" "GBA3 WILD-TYPE" 
    TCGA-67-6216     TCGA-67-6217     TCGA-71-6725     TCGA-73-4658 
"GBA3 WILD-TYPE" "GBA3 WILD-TYPE" "GBA3 WILD-TYPE"   "GBA3 MUTATED" 
    TCGA-73-4659     TCGA-73-4662     TCGA-73-4666     TCGA-73-4668 
"GBA3 WILD-TYPE" "GBA3 WILD-TYPE" "GBA3 WILD-TYPE" "GBA3 WILD-TYPE" 
    TCGA-73-4670     TCGA-73-4675     TCGA-73-4676     TCGA-73-4677 
"GBA3 WILD-TYPE" "GBA3 WILD-TYPE" "GBA3 WILD-TYPE"   "GBA3 MUTATED" 
    TCGA-91-6828     TCGA-91-6829     TCGA-91-6831     TCGA-91-6835 
"GBA3 WILD-TYPE"   "GBA3 MUTATED" "GBA3 WILD-TYPE" "GBA3 WILD-TYPE" 
    TCGA-91-6836 
"GBA3 WILD-TYPE" 
[1] "hr=" "1.5"
D131V2, continuous
D131V3, binary
[1] "tbl2"
                cls
clus             [,1] [,2]
  GBA3 MUTATED      5    3
  GBA3 WILD-TYPE   88   76
        clus
vv       GBA3 MUTATED GBA3 WILD-TYPE
  FEMALE            5             88
  MALE              3             76
D131V4, continuous
[1] "Remove cluster labels:" "GBA3 MUTATED"          
clus
  GBA3 MUTATED GBA3 WILD-TYPE 
             1             11 
    TCGA-35-4122     TCGA-35-4123     TCGA-35-5375     TCGA-64-1677 
"GBA3 WILD-TYPE" "GBA3 WILD-TYPE" "GBA3 WILD-TYPE" "GBA3 WILD-TYPE" 
    TCGA-71-6725     TCGA-73-4659     TCGA-73-4662     TCGA-73-4666 
"GBA3 WILD-TYPE" "GBA3 WILD-TYPE" "GBA3 WILD-TYPE" "GBA3 WILD-TYPE" 
    TCGA-73-4668     TCGA-73-4676     TCGA-75-5122 
"GBA3 WILD-TYPE" "GBA3 WILD-TYPE" "GBA3 WILD-TYPE" 
D131V5, multiclass
D131V6, multiclass
    clus
vv   GBA3 MUTATED GBA3 WILD-TYPE
  T1            2             39
  T2            6            102
  T3            0             14
  T4            0              8
D131V7, multiclass
       clus
vv      GBA3 MUTATED GBA3 WILD-TYPE
  N0               8             87
  N1               0             37
  N2+N3            0             35
D131V8, multiclass
    clus
vv   GBA3 MUTATED GBA3 WILD-TYPE
  M0            7            130
  M1            0              9
  MX            1             21
D131V9, multiclass
     clus
vv    GBA3 MUTATED GBA3 WILD-TYPE
  I              8             80
  II             0             33
  III            0             39
  IV             0              9
D131V10, binary
[1] "tbl2"
                cls
clus             [,1] [,2]
  GBA3 MUTATED      0    8
  GBA3 WILD-TYPE   16  148
     clus
vv    GBA3 MUTATED GBA3 WILD-TYPE
  NO             0             16
  YES            8            148
D131V11, continuous
D131V12, continuous
D131V13, multiclass
                                             clus
vv                                            GBA3 MUTATED GBA3 WILD-TYPE
  CURRENT REFORMED SMOKER FOR < OR = 15 YEARS            4             58
  CURRENT REFORMED SMOKER FOR > 15 YEARS                 3             43
  CURRENT SMOKER                                         0             28
  LIFELONG NON-SMOKER                                    0             24
D131V14, continuous

Clustering(132) Variable = TUBB4Q MUTATION ANALYSIS
D132V1, survival
                  sevent
clus2               0  1
  TUBB4Q MUTATED    7  1
  TUBB4Q WILD-TYPE 92 49
  TUBB4Q MUTATED TUBB4Q WILD-TYPE 
               8              141 
  TUBB4Q MUTATED TUBB4Q WILD-TYPE 
               1               49 
$`TUBB4Q MUTATED`
TCGA-05-4396 TCGA-05-4424 TCGA-05-4427 TCGA-05-4433 TCGA-35-5375 TCGA-44-2656 
        9.96        30.02        26.01        24.00         8.68        19.10 
TCGA-55-5899 TCGA-91-6836 
        2.86         0.36 

$`TUBB4Q WILD-TYPE`
TCGA-05-4249 TCGA-05-4250 TCGA-05-4382 TCGA-05-4384 TCGA-05-4390 TCGA-05-4397 
       38.07         3.98        19.92        14.01        37.02        24.03 
TCGA-05-4398 TCGA-05-4402 TCGA-05-4405 TCGA-05-4415 TCGA-05-4417 TCGA-05-4418 
       47.05         8.02        20.05         2.96        14.93         8.98 
TCGA-05-4420 TCGA-05-4426 TCGA-05-4430 TCGA-05-4432 TCGA-05-4434 TCGA-05-5420 
       29.95        26.01        25.02        25.02        15.02         1.02 
TCGA-05-5423 TCGA-05-5425 TCGA-05-5429 TCGA-05-5715 TCGA-35-3615 TCGA-35-4122 
        4.96         2.96         0.99         2.04         0.46         7.36 
TCGA-35-4123 TCGA-38-4625 TCGA-38-4626 TCGA-38-4627 TCGA-38-4628 TCGA-38-4629 
        5.95        47.61        85.32        37.71        49.02        28.37 
TCGA-38-4630 TCGA-38-4631 TCGA-38-4632 TCGA-38-6178 TCGA-44-2655 TCGA-44-2657 
       35.28        11.64        44.61         5.19        18.87        13.15 
TCGA-44-2659 TCGA-44-2661 TCGA-44-2662 TCGA-44-2665 TCGA-44-2666 TCGA-44-2668 
       17.39         3.39        15.78        13.15         3.19         8.09 
TCGA-44-3396 TCGA-44-3398 TCGA-44-3918 TCGA-44-3919 TCGA-44-4112 TCGA-44-5643 
       10.22         8.32         6.44         6.21         4.60         3.48 
TCGA-44-5645 TCGA-44-6144 TCGA-44-6145 TCGA-44-6146 TCGA-44-6147 TCGA-44-6148 
        6.84         0.30         3.35         9.93         7.76         3.12 
TCGA-44-6774 TCGA-44-6775 TCGA-44-6776 TCGA-44-6777 TCGA-44-6778 TCGA-44-6779 
        5.42         2.70        63.72        32.45        36.49        16.41 
TCGA-49-4486 TCGA-49-4487 TCGA-49-4488 TCGA-49-4490 TCGA-49-4494 TCGA-49-4501 
       76.21        28.11        28.57        12.66        35.54        46.72 
TCGA-49-4505 TCGA-49-4506 TCGA-49-4507 TCGA-49-4510 TCGA-49-4512 TCGA-49-4514 
       14.07        32.84         8.81        29.46        29.75        43.20 
TCGA-49-6742 TCGA-49-6743 TCGA-49-6744 TCGA-49-6745 TCGA-50-5044 TCGA-50-5045 
       15.02        12.13        12.99         4.93        20.48        71.47 
TCGA-50-5049 TCGA-50-5051 TCGA-50-5055 TCGA-50-5066 TCGA-50-5068 TCGA-50-5072 
       48.82        14.96        25.81         9.76        49.28         8.05 
TCGA-50-5930 TCGA-50-5931 TCGA-50-5932 TCGA-50-5933 TCGA-50-5935 TCGA-50-5936 
        9.27         8.78        35.87        77.88        21.47         8.45 
TCGA-50-5939 TCGA-50-5941 TCGA-50-5942 TCGA-50-5944 TCGA-50-5946 TCGA-50-6590 
       15.12         9.37         4.44        12.26        11.47        42.31 
TCGA-50-6591 TCGA-50-6592 TCGA-50-6593 TCGA-50-6594 TCGA-50-6595 TCGA-50-6597 
        3.88        25.51        11.05        12.16         6.21        33.37 
TCGA-55-1592 TCGA-55-1594 TCGA-55-1595 TCGA-55-1596 TCGA-55-6543 TCGA-55-6642 
       23.05        38.73        48.62        45.17         0.07        32.61 
TCGA-55-6712 TCGA-64-1676 TCGA-64-1677 TCGA-64-1678 TCGA-64-1680 TCGA-64-5774 
        0.79        56.81        20.65        39.09        37.02        83.84 
TCGA-64-5775 TCGA-64-5778 TCGA-64-5779 TCGA-64-5781 TCGA-64-5815 TCGA-67-3770 
        0.10        30.44        16.67        39.52         7.33         0.99 
TCGA-67-3771 TCGA-67-3772 TCGA-67-3773 TCGA-67-3774 TCGA-67-6215 TCGA-67-6216 
        1.97         0.59         2.04         0.59         0.89         0.69 
TCGA-67-6217 TCGA-71-6725 TCGA-73-4658 TCGA-73-4659 TCGA-73-4662 TCGA-73-4666 
       13.87         2.01        52.57        23.38        29.95        20.28 
TCGA-73-4668 TCGA-73-4670 TCGA-73-4675 TCGA-73-4676 TCGA-73-4677 TCGA-91-6828 
       15.35         0.46         1.32         4.01         1.25         1.22 
TCGA-91-6829 TCGA-91-6831 TCGA-91-6835 
       41.33         1.28         1.15 

  TUBB4Q MUTATED TUBB4Q WILD-TYPE 
            0.36             0.07 
  TUBB4Q MUTATED TUBB4Q WILD-TYPE 
           30.02            85.32 
  TUBB4Q MUTATED TUBB4Q WILD-TYPE 
           14.53            13.87 
[1] "0.4 - 30.0 (14.5)" "0.1 - 85.3 (13.9)"
      TCGA-05-4249       TCGA-05-4250       TCGA-05-4382       TCGA-05-4384 
"TUBB4Q WILD-TYPE" "TUBB4Q WILD-TYPE" "TUBB4Q WILD-TYPE" "TUBB4Q WILD-TYPE" 
      TCGA-05-4390       TCGA-05-4396       TCGA-05-4397       TCGA-05-4398 
"TUBB4Q WILD-TYPE"   "TUBB4Q MUTATED" "TUBB4Q WILD-TYPE" "TUBB4Q WILD-TYPE" 
      TCGA-05-4402       TCGA-05-4405       TCGA-05-4415       TCGA-05-4417 
"TUBB4Q WILD-TYPE" "TUBB4Q WILD-TYPE" "TUBB4Q WILD-TYPE" "TUBB4Q WILD-TYPE" 
      TCGA-05-4418       TCGA-05-4420       TCGA-05-4424       TCGA-05-4426 
"TUBB4Q WILD-TYPE" "TUBB4Q WILD-TYPE"   "TUBB4Q MUTATED" "TUBB4Q WILD-TYPE" 
      TCGA-05-4427       TCGA-05-4430       TCGA-05-4432       TCGA-05-4433 
  "TUBB4Q MUTATED" "TUBB4Q WILD-TYPE" "TUBB4Q WILD-TYPE"   "TUBB4Q MUTATED" 
      TCGA-05-4434       TCGA-05-5420       TCGA-05-5423       TCGA-05-5425 
"TUBB4Q WILD-TYPE" "TUBB4Q WILD-TYPE" "TUBB4Q WILD-TYPE" "TUBB4Q WILD-TYPE" 
      TCGA-05-5429       TCGA-05-5715       TCGA-35-3615       TCGA-35-4122 
"TUBB4Q WILD-TYPE" "TUBB4Q WILD-TYPE" "TUBB4Q WILD-TYPE" "TUBB4Q WILD-TYPE" 
      TCGA-35-4123       TCGA-35-5375       TCGA-38-4625       TCGA-38-4626 
"TUBB4Q WILD-TYPE"   "TUBB4Q MUTATED" "TUBB4Q WILD-TYPE" "TUBB4Q WILD-TYPE" 
      TCGA-38-4627       TCGA-38-4628       TCGA-38-4629       TCGA-38-4630 
"TUBB4Q WILD-TYPE" "TUBB4Q WILD-TYPE" "TUBB4Q WILD-TYPE" "TUBB4Q WILD-TYPE" 
      TCGA-38-4631       TCGA-38-4632       TCGA-38-6178       TCGA-44-2655 
"TUBB4Q WILD-TYPE" "TUBB4Q WILD-TYPE" "TUBB4Q WILD-TYPE" "TUBB4Q WILD-TYPE" 
      TCGA-44-2656       TCGA-44-2657       TCGA-44-2659       TCGA-44-2661 
  "TUBB4Q MUTATED" "TUBB4Q WILD-TYPE" "TUBB4Q WILD-TYPE" "TUBB4Q WILD-TYPE" 
      TCGA-44-2662       TCGA-44-2665       TCGA-44-2666       TCGA-44-2668 
"TUBB4Q WILD-TYPE" "TUBB4Q WILD-TYPE" "TUBB4Q WILD-TYPE" "TUBB4Q WILD-TYPE" 
      TCGA-44-3396       TCGA-44-3398       TCGA-44-3918       TCGA-44-3919 
"TUBB4Q WILD-TYPE" "TUBB4Q WILD-TYPE" "TUBB4Q WILD-TYPE" "TUBB4Q WILD-TYPE" 
      TCGA-44-4112       TCGA-44-5643       TCGA-44-5645       TCGA-44-6144 
"TUBB4Q WILD-TYPE" "TUBB4Q WILD-TYPE" "TUBB4Q WILD-TYPE" "TUBB4Q WILD-TYPE" 
      TCGA-44-6145       TCGA-44-6146       TCGA-44-6147       TCGA-44-6148 
"TUBB4Q WILD-TYPE" "TUBB4Q WILD-TYPE" "TUBB4Q WILD-TYPE" "TUBB4Q WILD-TYPE" 
      TCGA-44-6774       TCGA-44-6775       TCGA-44-6776       TCGA-44-6777 
"TUBB4Q WILD-TYPE" "TUBB4Q WILD-TYPE" "TUBB4Q WILD-TYPE" "TUBB4Q WILD-TYPE" 
      TCGA-44-6778       TCGA-44-6779       TCGA-49-4486       TCGA-49-4487 
"TUBB4Q WILD-TYPE" "TUBB4Q WILD-TYPE" "TUBB4Q WILD-TYPE" "TUBB4Q WILD-TYPE" 
      TCGA-49-4488       TCGA-49-4490       TCGA-49-4494       TCGA-49-4501 
"TUBB4Q WILD-TYPE" "TUBB4Q WILD-TYPE" "TUBB4Q WILD-TYPE" "TUBB4Q WILD-TYPE" 
      TCGA-49-4505       TCGA-49-4506       TCGA-49-4507       TCGA-49-4510 
"TUBB4Q WILD-TYPE" "TUBB4Q WILD-TYPE" "TUBB4Q WILD-TYPE" "TUBB4Q WILD-TYPE" 
      TCGA-49-4512       TCGA-49-4514       TCGA-49-6742       TCGA-49-6743 
"TUBB4Q WILD-TYPE" "TUBB4Q WILD-TYPE" "TUBB4Q WILD-TYPE" "TUBB4Q WILD-TYPE" 
      TCGA-49-6744       TCGA-49-6745       TCGA-50-5044       TCGA-50-5045 
"TUBB4Q WILD-TYPE" "TUBB4Q WILD-TYPE" "TUBB4Q WILD-TYPE" "TUBB4Q WILD-TYPE" 
      TCGA-50-5049       TCGA-50-5051       TCGA-50-5055       TCGA-50-5066 
"TUBB4Q WILD-TYPE" "TUBB4Q WILD-TYPE" "TUBB4Q WILD-TYPE" "TUBB4Q WILD-TYPE" 
      TCGA-50-5068       TCGA-50-5072       TCGA-50-5930       TCGA-50-5931 
"TUBB4Q WILD-TYPE" "TUBB4Q WILD-TYPE" "TUBB4Q WILD-TYPE" "TUBB4Q WILD-TYPE" 
      TCGA-50-5932       TCGA-50-5933       TCGA-50-5935       TCGA-50-5936 
"TUBB4Q WILD-TYPE" "TUBB4Q WILD-TYPE" "TUBB4Q WILD-TYPE" "TUBB4Q WILD-TYPE" 
      TCGA-50-5939       TCGA-50-5941       TCGA-50-5942       TCGA-50-5944 
"TUBB4Q WILD-TYPE" "TUBB4Q WILD-TYPE" "TUBB4Q WILD-TYPE" "TUBB4Q WILD-TYPE" 
      TCGA-50-5946       TCGA-50-6590       TCGA-50-6591       TCGA-50-6592 
"TUBB4Q WILD-TYPE" "TUBB4Q WILD-TYPE" "TUBB4Q WILD-TYPE" "TUBB4Q WILD-TYPE" 
      TCGA-50-6593       TCGA-50-6594       TCGA-50-6595       TCGA-50-6597 
"TUBB4Q WILD-TYPE" "TUBB4Q WILD-TYPE" "TUBB4Q WILD-TYPE" "TUBB4Q WILD-TYPE" 
      TCGA-55-1592       TCGA-55-1594       TCGA-55-1595       TCGA-55-1596 
"TUBB4Q WILD-TYPE" "TUBB4Q WILD-TYPE" "TUBB4Q WILD-TYPE" "TUBB4Q WILD-TYPE" 
      TCGA-55-5899       TCGA-55-6543       TCGA-55-6642       TCGA-55-6712 
  "TUBB4Q MUTATED" "TUBB4Q WILD-TYPE" "TUBB4Q WILD-TYPE" "TUBB4Q WILD-TYPE" 
      TCGA-64-1676       TCGA-64-1677       TCGA-64-1678       TCGA-64-1680 
"TUBB4Q WILD-TYPE" "TUBB4Q WILD-TYPE" "TUBB4Q WILD-TYPE" "TUBB4Q WILD-TYPE" 
      TCGA-64-5774       TCGA-64-5775       TCGA-64-5778       TCGA-64-5779 
"TUBB4Q WILD-TYPE" "TUBB4Q WILD-TYPE" "TUBB4Q WILD-TYPE" "TUBB4Q WILD-TYPE" 
      TCGA-64-5781       TCGA-64-5815       TCGA-67-3770       TCGA-67-3771 
"TUBB4Q WILD-TYPE" "TUBB4Q WILD-TYPE" "TUBB4Q WILD-TYPE" "TUBB4Q WILD-TYPE" 
      TCGA-67-3772       TCGA-67-3773       TCGA-67-3774       TCGA-67-6215 
"TUBB4Q WILD-TYPE" "TUBB4Q WILD-TYPE" "TUBB4Q WILD-TYPE" "TUBB4Q WILD-TYPE" 
      TCGA-67-6216       TCGA-67-6217       TCGA-71-6725       TCGA-73-4658 
"TUBB4Q WILD-TYPE" "TUBB4Q WILD-TYPE" "TUBB4Q WILD-TYPE" "TUBB4Q WILD-TYPE" 
      TCGA-73-4659       TCGA-73-4662       TCGA-73-4666       TCGA-73-4668 
"TUBB4Q WILD-TYPE" "TUBB4Q WILD-TYPE" "TUBB4Q WILD-TYPE" "TUBB4Q WILD-TYPE" 
      TCGA-73-4670       TCGA-73-4675       TCGA-73-4676       TCGA-73-4677 
"TUBB4Q WILD-TYPE" "TUBB4Q WILD-TYPE" "TUBB4Q WILD-TYPE" "TUBB4Q WILD-TYPE" 
      TCGA-91-6828       TCGA-91-6829       TCGA-91-6831       TCGA-91-6835 
"TUBB4Q WILD-TYPE" "TUBB4Q WILD-TYPE" "TUBB4Q WILD-TYPE" "TUBB4Q WILD-TYPE" 
      TCGA-91-6836 
  "TUBB4Q MUTATED" 
      TCGA-05-4249       TCGA-05-4250       TCGA-05-4382       TCGA-05-4384 
"TUBB4Q WILD-TYPE" "TUBB4Q WILD-TYPE" "TUBB4Q WILD-TYPE" "TUBB4Q WILD-TYPE" 
      TCGA-05-4390       TCGA-05-4396       TCGA-05-4397       TCGA-05-4398 
"TUBB4Q WILD-TYPE"   "TUBB4Q MUTATED" "TUBB4Q WILD-TYPE" "TUBB4Q WILD-TYPE" 
      TCGA-05-4402       TCGA-05-4405       TCGA-05-4415       TCGA-05-4417 
"TUBB4Q WILD-TYPE" "TUBB4Q WILD-TYPE" "TUBB4Q WILD-TYPE" "TUBB4Q WILD-TYPE" 
      TCGA-05-4418       TCGA-05-4420       TCGA-05-4424       TCGA-05-4426 
"TUBB4Q WILD-TYPE" "TUBB4Q WILD-TYPE"   "TUBB4Q MUTATED" "TUBB4Q WILD-TYPE" 
      TCGA-05-4427       TCGA-05-4430       TCGA-05-4432       TCGA-05-4433 
  "TUBB4Q MUTATED" "TUBB4Q WILD-TYPE" "TUBB4Q WILD-TYPE"   "TUBB4Q MUTATED" 
      TCGA-05-4434       TCGA-05-5420       TCGA-05-5423       TCGA-05-5425 
"TUBB4Q WILD-TYPE" "TUBB4Q WILD-TYPE" "TUBB4Q WILD-TYPE" "TUBB4Q WILD-TYPE" 
      TCGA-05-5429       TCGA-05-5715       TCGA-35-3615       TCGA-35-4122 
"TUBB4Q WILD-TYPE" "TUBB4Q WILD-TYPE" "TUBB4Q WILD-TYPE" "TUBB4Q WILD-TYPE" 
      TCGA-35-4123       TCGA-35-5375       TCGA-38-4625       TCGA-38-4626 
"TUBB4Q WILD-TYPE"   "TUBB4Q MUTATED" "TUBB4Q WILD-TYPE" "TUBB4Q WILD-TYPE" 
      TCGA-38-4627       TCGA-38-4628       TCGA-38-4629       TCGA-38-4630 
"TUBB4Q WILD-TYPE" "TUBB4Q WILD-TYPE" "TUBB4Q WILD-TYPE" "TUBB4Q WILD-TYPE" 
      TCGA-38-4631       TCGA-38-4632       TCGA-38-6178       TCGA-44-2655 
"TUBB4Q WILD-TYPE" "TUBB4Q WILD-TYPE" "TUBB4Q WILD-TYPE" "TUBB4Q WILD-TYPE" 
      TCGA-44-2656       TCGA-44-2657       TCGA-44-2659       TCGA-44-2661 
  "TUBB4Q MUTATED" "TUBB4Q WILD-TYPE" "TUBB4Q WILD-TYPE" "TUBB4Q WILD-TYPE" 
      TCGA-44-2662       TCGA-44-2665       TCGA-44-2666       TCGA-44-2668 
"TUBB4Q WILD-TYPE" "TUBB4Q WILD-TYPE" "TUBB4Q WILD-TYPE" "TUBB4Q WILD-TYPE" 
      TCGA-44-3396       TCGA-44-3398       TCGA-44-3918       TCGA-44-3919 
"TUBB4Q WILD-TYPE" "TUBB4Q WILD-TYPE" "TUBB4Q WILD-TYPE" "TUBB4Q WILD-TYPE" 
      TCGA-44-4112       TCGA-44-5643       TCGA-44-5645       TCGA-44-6144 
"TUBB4Q WILD-TYPE" "TUBB4Q WILD-TYPE" "TUBB4Q WILD-TYPE" "TUBB4Q WILD-TYPE" 
      TCGA-44-6145       TCGA-44-6146       TCGA-44-6147       TCGA-44-6148 
"TUBB4Q WILD-TYPE" "TUBB4Q WILD-TYPE" "TUBB4Q WILD-TYPE" "TUBB4Q WILD-TYPE" 
      TCGA-44-6774       TCGA-44-6775       TCGA-44-6776       TCGA-44-6777 
"TUBB4Q WILD-TYPE" "TUBB4Q WILD-TYPE" "TUBB4Q WILD-TYPE" "TUBB4Q WILD-TYPE" 
      TCGA-44-6778       TCGA-44-6779       TCGA-49-4486       TCGA-49-4487 
"TUBB4Q WILD-TYPE" "TUBB4Q WILD-TYPE" "TUBB4Q WILD-TYPE" "TUBB4Q WILD-TYPE" 
      TCGA-49-4488       TCGA-49-4490       TCGA-49-4494       TCGA-49-4501 
"TUBB4Q WILD-TYPE" "TUBB4Q WILD-TYPE" "TUBB4Q WILD-TYPE" "TUBB4Q WILD-TYPE" 
      TCGA-49-4505       TCGA-49-4506       TCGA-49-4507       TCGA-49-4510 
"TUBB4Q WILD-TYPE" "TUBB4Q WILD-TYPE" "TUBB4Q WILD-TYPE" "TUBB4Q WILD-TYPE" 
      TCGA-49-4512       TCGA-49-4514       TCGA-49-6742       TCGA-49-6743 
"TUBB4Q WILD-TYPE" "TUBB4Q WILD-TYPE" "TUBB4Q WILD-TYPE" "TUBB4Q WILD-TYPE" 
      TCGA-49-6744       TCGA-49-6745       TCGA-50-5044       TCGA-50-5045 
"TUBB4Q WILD-TYPE" "TUBB4Q WILD-TYPE" "TUBB4Q WILD-TYPE" "TUBB4Q WILD-TYPE" 
      TCGA-50-5049       TCGA-50-5051       TCGA-50-5055       TCGA-50-5066 
"TUBB4Q WILD-TYPE" "TUBB4Q WILD-TYPE" "TUBB4Q WILD-TYPE" "TUBB4Q WILD-TYPE" 
      TCGA-50-5068       TCGA-50-5072       TCGA-50-5930       TCGA-50-5931 
"TUBB4Q WILD-TYPE" "TUBB4Q WILD-TYPE" "TUBB4Q WILD-TYPE" "TUBB4Q WILD-TYPE" 
      TCGA-50-5932       TCGA-50-5933       TCGA-50-5935       TCGA-50-5936 
"TUBB4Q WILD-TYPE" "TUBB4Q WILD-TYPE" "TUBB4Q WILD-TYPE" "TUBB4Q WILD-TYPE" 
      TCGA-50-5939       TCGA-50-5941       TCGA-50-5942       TCGA-50-5944 
"TUBB4Q WILD-TYPE" "TUBB4Q WILD-TYPE" "TUBB4Q WILD-TYPE" "TUBB4Q WILD-TYPE" 
      TCGA-50-5946       TCGA-50-6590       TCGA-50-6591       TCGA-50-6592 
"TUBB4Q WILD-TYPE" "TUBB4Q WILD-TYPE" "TUBB4Q WILD-TYPE" "TUBB4Q WILD-TYPE" 
      TCGA-50-6593       TCGA-50-6594       TCGA-50-6595       TCGA-50-6597 
"TUBB4Q WILD-TYPE" "TUBB4Q WILD-TYPE" "TUBB4Q WILD-TYPE" "TUBB4Q WILD-TYPE" 
      TCGA-55-1592       TCGA-55-1594       TCGA-55-1595       TCGA-55-1596 
"TUBB4Q WILD-TYPE" "TUBB4Q WILD-TYPE" "TUBB4Q WILD-TYPE" "TUBB4Q WILD-TYPE" 
      TCGA-55-5899       TCGA-55-6543       TCGA-55-6642       TCGA-55-6712 
  "TUBB4Q MUTATED" "TUBB4Q WILD-TYPE" "TUBB4Q WILD-TYPE" "TUBB4Q WILD-TYPE" 
      TCGA-64-1676       TCGA-64-1677       TCGA-64-1678       TCGA-64-1680 
"TUBB4Q WILD-TYPE" "TUBB4Q WILD-TYPE" "TUBB4Q WILD-TYPE" "TUBB4Q WILD-TYPE" 
      TCGA-64-5774       TCGA-64-5775       TCGA-64-5778       TCGA-64-5779 
"TUBB4Q WILD-TYPE" "TUBB4Q WILD-TYPE" "TUBB4Q WILD-TYPE" "TUBB4Q WILD-TYPE" 
      TCGA-64-5781       TCGA-64-5815       TCGA-67-3770       TCGA-67-3771 
"TUBB4Q WILD-TYPE" "TUBB4Q WILD-TYPE" "TUBB4Q WILD-TYPE" "TUBB4Q WILD-TYPE" 
      TCGA-67-3772       TCGA-67-3773       TCGA-67-3774       TCGA-67-6215 
"TUBB4Q WILD-TYPE" "TUBB4Q WILD-TYPE" "TUBB4Q WILD-TYPE" "TUBB4Q WILD-TYPE" 
      TCGA-67-6216       TCGA-67-6217       TCGA-71-6725       TCGA-73-4658 
"TUBB4Q WILD-TYPE" "TUBB4Q WILD-TYPE" "TUBB4Q WILD-TYPE" "TUBB4Q WILD-TYPE" 
      TCGA-73-4659       TCGA-73-4662       TCGA-73-4666       TCGA-73-4668 
"TUBB4Q WILD-TYPE" "TUBB4Q WILD-TYPE" "TUBB4Q WILD-TYPE" "TUBB4Q WILD-TYPE" 
      TCGA-73-4670       TCGA-73-4675       TCGA-73-4676       TCGA-73-4677 
"TUBB4Q WILD-TYPE" "TUBB4Q WILD-TYPE" "TUBB4Q WILD-TYPE" "TUBB4Q WILD-TYPE" 
      TCGA-91-6828       TCGA-91-6829       TCGA-91-6831       TCGA-91-6835 
"TUBB4Q WILD-TYPE" "TUBB4Q WILD-TYPE" "TUBB4Q WILD-TYPE" "TUBB4Q WILD-TYPE" 
      TCGA-91-6836 
  "TUBB4Q MUTATED" 
      TCGA-05-4249       TCGA-05-4250       TCGA-05-4382       TCGA-05-4384 
"TUBB4Q WILD-TYPE" "TUBB4Q WILD-TYPE" "TUBB4Q WILD-TYPE" "TUBB4Q WILD-TYPE" 
      TCGA-05-4390       TCGA-05-4396       TCGA-05-4397       TCGA-05-4398 
"TUBB4Q WILD-TYPE"   "TUBB4Q MUTATED" "TUBB4Q WILD-TYPE" "TUBB4Q WILD-TYPE" 
      TCGA-05-4402       TCGA-05-4405       TCGA-05-4415       TCGA-05-4417 
"TUBB4Q WILD-TYPE" "TUBB4Q WILD-TYPE" "TUBB4Q WILD-TYPE" "TUBB4Q WILD-TYPE" 
      TCGA-05-4418       TCGA-05-4420       TCGA-05-4424       TCGA-05-4426 
"TUBB4Q WILD-TYPE" "TUBB4Q WILD-TYPE"   "TUBB4Q MUTATED" "TUBB4Q WILD-TYPE" 
      TCGA-05-4427       TCGA-05-4430       TCGA-05-4432       TCGA-05-4433 
  "TUBB4Q MUTATED" "TUBB4Q WILD-TYPE" "TUBB4Q WILD-TYPE"   "TUBB4Q MUTATED" 
      TCGA-05-4434       TCGA-05-5420       TCGA-05-5423       TCGA-05-5425 
"TUBB4Q WILD-TYPE" "TUBB4Q WILD-TYPE" "TUBB4Q WILD-TYPE" "TUBB4Q WILD-TYPE" 
      TCGA-05-5429       TCGA-05-5715       TCGA-35-3615       TCGA-35-4122 
"TUBB4Q WILD-TYPE" "TUBB4Q WILD-TYPE" "TUBB4Q WILD-TYPE" "TUBB4Q WILD-TYPE" 
      TCGA-35-4123       TCGA-35-5375       TCGA-38-4625       TCGA-38-4626 
"TUBB4Q WILD-TYPE"   "TUBB4Q MUTATED" "TUBB4Q WILD-TYPE" "TUBB4Q WILD-TYPE" 
      TCGA-38-4627       TCGA-38-4628       TCGA-38-4629       TCGA-38-4630 
"TUBB4Q WILD-TYPE" "TUBB4Q WILD-TYPE" "TUBB4Q WILD-TYPE" "TUBB4Q WILD-TYPE" 
      TCGA-38-4631       TCGA-38-4632       TCGA-38-6178       TCGA-44-2655 
"TUBB4Q WILD-TYPE" "TUBB4Q WILD-TYPE" "TUBB4Q WILD-TYPE" "TUBB4Q WILD-TYPE" 
      TCGA-44-2656       TCGA-44-2657       TCGA-44-2659       TCGA-44-2661 
  "TUBB4Q MUTATED" "TUBB4Q WILD-TYPE" "TUBB4Q WILD-TYPE" "TUBB4Q WILD-TYPE" 
      TCGA-44-2662       TCGA-44-2665       TCGA-44-2666       TCGA-44-2668 
"TUBB4Q WILD-TYPE" "TUBB4Q WILD-TYPE" "TUBB4Q WILD-TYPE" "TUBB4Q WILD-TYPE" 
      TCGA-44-3396       TCGA-44-3398       TCGA-44-3918       TCGA-44-3919 
"TUBB4Q WILD-TYPE" "TUBB4Q WILD-TYPE" "TUBB4Q WILD-TYPE" "TUBB4Q WILD-TYPE" 
      TCGA-44-4112       TCGA-44-5643       TCGA-44-5645       TCGA-44-6144 
"TUBB4Q WILD-TYPE" "TUBB4Q WILD-TYPE" "TUBB4Q WILD-TYPE" "TUBB4Q WILD-TYPE" 
      TCGA-44-6145       TCGA-44-6146       TCGA-44-6147       TCGA-44-6148 
"TUBB4Q WILD-TYPE" "TUBB4Q WILD-TYPE" "TUBB4Q WILD-TYPE" "TUBB4Q WILD-TYPE" 
      TCGA-44-6774       TCGA-44-6775       TCGA-44-6776       TCGA-44-6777 
"TUBB4Q WILD-TYPE" "TUBB4Q WILD-TYPE" "TUBB4Q WILD-TYPE" "TUBB4Q WILD-TYPE" 
      TCGA-44-6778       TCGA-44-6779       TCGA-49-4486       TCGA-49-4487 
"TUBB4Q WILD-TYPE" "TUBB4Q WILD-TYPE" "TUBB4Q WILD-TYPE" "TUBB4Q WILD-TYPE" 
      TCGA-49-4488       TCGA-49-4490       TCGA-49-4494       TCGA-49-4501 
"TUBB4Q WILD-TYPE" "TUBB4Q WILD-TYPE" "TUBB4Q WILD-TYPE" "TUBB4Q WILD-TYPE" 
      TCGA-49-4505       TCGA-49-4506       TCGA-49-4507       TCGA-49-4510 
"TUBB4Q WILD-TYPE" "TUBB4Q WILD-TYPE" "TUBB4Q WILD-TYPE" "TUBB4Q WILD-TYPE" 
      TCGA-49-4512       TCGA-49-4514       TCGA-49-6742       TCGA-49-6743 
"TUBB4Q WILD-TYPE" "TUBB4Q WILD-TYPE" "TUBB4Q WILD-TYPE" "TUBB4Q WILD-TYPE" 
      TCGA-49-6744       TCGA-49-6745       TCGA-50-5044       TCGA-50-5045 
"TUBB4Q WILD-TYPE" "TUBB4Q WILD-TYPE" "TUBB4Q WILD-TYPE" "TUBB4Q WILD-TYPE" 
      TCGA-50-5049       TCGA-50-5051       TCGA-50-5055       TCGA-50-5066 
"TUBB4Q WILD-TYPE" "TUBB4Q WILD-TYPE" "TUBB4Q WILD-TYPE" "TUBB4Q WILD-TYPE" 
      TCGA-50-5068       TCGA-50-5072       TCGA-50-5930       TCGA-50-5931 
"TUBB4Q WILD-TYPE" "TUBB4Q WILD-TYPE" "TUBB4Q WILD-TYPE" "TUBB4Q WILD-TYPE" 
      TCGA-50-5932       TCGA-50-5933       TCGA-50-5935       TCGA-50-5936 
"TUBB4Q WILD-TYPE" "TUBB4Q WILD-TYPE" "TUBB4Q WILD-TYPE" "TUBB4Q WILD-TYPE" 
      TCGA-50-5939       TCGA-50-5941       TCGA-50-5942       TCGA-50-5944 
"TUBB4Q WILD-TYPE" "TUBB4Q WILD-TYPE" "TUBB4Q WILD-TYPE" "TUBB4Q WILD-TYPE" 
      TCGA-50-5946       TCGA-50-6590       TCGA-50-6591       TCGA-50-6592 
"TUBB4Q WILD-TYPE" "TUBB4Q WILD-TYPE" "TUBB4Q WILD-TYPE" "TUBB4Q WILD-TYPE" 
      TCGA-50-6593       TCGA-50-6594       TCGA-50-6595       TCGA-50-6597 
"TUBB4Q WILD-TYPE" "TUBB4Q WILD-TYPE" "TUBB4Q WILD-TYPE" "TUBB4Q WILD-TYPE" 
      TCGA-55-1592       TCGA-55-1594       TCGA-55-1595       TCGA-55-1596 
"TUBB4Q WILD-TYPE" "TUBB4Q WILD-TYPE" "TUBB4Q WILD-TYPE" "TUBB4Q WILD-TYPE" 
      TCGA-55-5899       TCGA-55-6543       TCGA-55-6642       TCGA-55-6712 
  "TUBB4Q MUTATED" "TUBB4Q WILD-TYPE" "TUBB4Q WILD-TYPE" "TUBB4Q WILD-TYPE" 
      TCGA-64-1676       TCGA-64-1677       TCGA-64-1678       TCGA-64-1680 
"TUBB4Q WILD-TYPE" "TUBB4Q WILD-TYPE" "TUBB4Q WILD-TYPE" "TUBB4Q WILD-TYPE" 
      TCGA-64-5774       TCGA-64-5775       TCGA-64-5778       TCGA-64-5779 
"TUBB4Q WILD-TYPE" "TUBB4Q WILD-TYPE" "TUBB4Q WILD-TYPE" "TUBB4Q WILD-TYPE" 
      TCGA-64-5781       TCGA-64-5815       TCGA-67-3770       TCGA-67-3771 
"TUBB4Q WILD-TYPE" "TUBB4Q WILD-TYPE" "TUBB4Q WILD-TYPE" "TUBB4Q WILD-TYPE" 
      TCGA-67-3772       TCGA-67-3773       TCGA-67-3774       TCGA-67-6215 
"TUBB4Q WILD-TYPE" "TUBB4Q WILD-TYPE" "TUBB4Q WILD-TYPE" "TUBB4Q WILD-TYPE" 
      TCGA-67-6216       TCGA-67-6217       TCGA-71-6725       TCGA-73-4658 
"TUBB4Q WILD-TYPE" "TUBB4Q WILD-TYPE" "TUBB4Q WILD-TYPE" "TUBB4Q WILD-TYPE" 
      TCGA-73-4659       TCGA-73-4662       TCGA-73-4666       TCGA-73-4668 
"TUBB4Q WILD-TYPE" "TUBB4Q WILD-TYPE" "TUBB4Q WILD-TYPE" "TUBB4Q WILD-TYPE" 
      TCGA-73-4670       TCGA-73-4675       TCGA-73-4676       TCGA-73-4677 
"TUBB4Q WILD-TYPE" "TUBB4Q WILD-TYPE" "TUBB4Q WILD-TYPE" "TUBB4Q WILD-TYPE" 
      TCGA-91-6828       TCGA-91-6829       TCGA-91-6831       TCGA-91-6835 
"TUBB4Q WILD-TYPE" "TUBB4Q WILD-TYPE" "TUBB4Q WILD-TYPE" "TUBB4Q WILD-TYPE" 
      TCGA-91-6836 
  "TUBB4Q MUTATED" 
[1] "hr=" "1.7"
D132V2, continuous
D132V3, binary
[1] "tbl2"
                  cls
clus               [,1] [,2]
  TUBB4Q MUTATED      3    6
  TUBB4Q WILD-TYPE   90   73
        clus
vv       TUBB4Q MUTATED TUBB4Q WILD-TYPE
  FEMALE              3               90
  MALE                6               73
D132V4, continuous
[1] "Remove cluster labels:" "TUBB4Q MUTATED"        
clus
  TUBB4Q MUTATED TUBB4Q WILD-TYPE 
               1               11 
      TCGA-35-4122       TCGA-35-4123       TCGA-64-1677       TCGA-64-5778 
"TUBB4Q WILD-TYPE" "TUBB4Q WILD-TYPE" "TUBB4Q WILD-TYPE" "TUBB4Q WILD-TYPE" 
      TCGA-71-6725       TCGA-73-4659       TCGA-73-4662       TCGA-73-4666 
"TUBB4Q WILD-TYPE" "TUBB4Q WILD-TYPE" "TUBB4Q WILD-TYPE" "TUBB4Q WILD-TYPE" 
      TCGA-73-4668       TCGA-73-4676       TCGA-75-5122 
"TUBB4Q WILD-TYPE" "TUBB4Q WILD-TYPE" "TUBB4Q WILD-TYPE" 
D132V5, multiclass
D132V6, multiclass
    clus
vv   TUBB4Q MUTATED TUBB4Q WILD-TYPE
  T1              1               40
  T2              5              103
  T3              2               12
  T4              1                7
D132V7, multiclass
       clus
vv      TUBB4Q MUTATED TUBB4Q WILD-TYPE
  N0                 5               90
  N1                 3               34
  N2+N3              1               34
D132V8, multiclass
    clus
vv   TUBB4Q MUTATED TUBB4Q WILD-TYPE
  M0              7              130
  M1              0                9
  MX              2               20
D132V9, multiclass
     clus
vv    TUBB4Q MUTATED TUBB4Q WILD-TYPE
  I                4               84
  II               3               30
  III              2               37
  IV               0                9
D132V10, binary
[1] "tbl2"
                  cls
clus               [,1] [,2]
  TUBB4Q MUTATED      0    9
  TUBB4Q WILD-TYPE   16  147
     clus
vv    TUBB4Q MUTATED TUBB4Q WILD-TYPE
  NO               0               16
  YES              9              147
D132V11, continuous
D132V12, continuous
D132V13, multiclass
                                             clus
vv                                            TUBB4Q MUTATED TUBB4Q WILD-TYPE
  CURRENT REFORMED SMOKER FOR < OR = 15 YEARS              4               58
  CURRENT REFORMED SMOKER FOR > 15 YEARS                   2               44
  CURRENT SMOKER                                           3               25
  LIFELONG NON-SMOKER                                      0               24
D132V14, continuous

Clustering(133) Variable = INHBA MUTATION ANALYSIS
D133V1, survival
                 sevent
clus2              0  1
  INHBA MUTATED    6  3
  INHBA WILD-TYPE 93 47
  INHBA MUTATED INHBA WILD-TYPE 
              9             140 
  INHBA MUTATED INHBA WILD-TYPE 
              3              47 
$`INHBA MUTATED`
TCGA-05-4398 TCGA-05-4418 TCGA-44-3396 TCGA-44-6774 TCGA-50-5045 TCGA-50-5051 
       47.05         8.98        10.22         5.42        71.47        14.96 
TCGA-64-5778 TCGA-64-5781 TCGA-73-4677 
       30.44        39.52         1.25 

$`INHBA WILD-TYPE`
TCGA-05-4249 TCGA-05-4250 TCGA-05-4382 TCGA-05-4384 TCGA-05-4390 TCGA-05-4396 
       38.07         3.98        19.92        14.01        37.02         9.96 
TCGA-05-4397 TCGA-05-4402 TCGA-05-4405 TCGA-05-4415 TCGA-05-4417 TCGA-05-4420 
       24.03         8.02        20.05         2.96        14.93        29.95 
TCGA-05-4424 TCGA-05-4426 TCGA-05-4427 TCGA-05-4430 TCGA-05-4432 TCGA-05-4433 
       30.02        26.01        26.01        25.02        25.02        24.00 
TCGA-05-4434 TCGA-05-5420 TCGA-05-5423 TCGA-05-5425 TCGA-05-5429 TCGA-05-5715 
       15.02         1.02         4.96         2.96         0.99         2.04 
TCGA-35-3615 TCGA-35-4122 TCGA-35-4123 TCGA-35-5375 TCGA-38-4625 TCGA-38-4626 
        0.46         7.36         5.95         8.68        47.61        85.32 
TCGA-38-4627 TCGA-38-4628 TCGA-38-4629 TCGA-38-4630 TCGA-38-4631 TCGA-38-4632 
       37.71        49.02        28.37        35.28        11.64        44.61 
TCGA-38-6178 TCGA-44-2655 TCGA-44-2656 TCGA-44-2657 TCGA-44-2659 TCGA-44-2661 
        5.19        18.87        19.10        13.15        17.39         3.39 
TCGA-44-2662 TCGA-44-2665 TCGA-44-2666 TCGA-44-2668 TCGA-44-3398 TCGA-44-3918 
       15.78        13.15         3.19         8.09         8.32         6.44 
TCGA-44-3919 TCGA-44-4112 TCGA-44-5643 TCGA-44-5645 TCGA-44-6144 TCGA-44-6145 
        6.21         4.60         3.48         6.84         0.30         3.35 
TCGA-44-6146 TCGA-44-6147 TCGA-44-6148 TCGA-44-6775 TCGA-44-6776 TCGA-44-6777 
        9.93         7.76         3.12         2.70        63.72        32.45 
TCGA-44-6778 TCGA-44-6779 TCGA-49-4486 TCGA-49-4487 TCGA-49-4488 TCGA-49-4490 
       36.49        16.41        76.21        28.11        28.57        12.66 
TCGA-49-4494 TCGA-49-4501 TCGA-49-4505 TCGA-49-4506 TCGA-49-4507 TCGA-49-4510 
       35.54        46.72        14.07        32.84         8.81        29.46 
TCGA-49-4512 TCGA-49-4514 TCGA-49-6742 TCGA-49-6743 TCGA-49-6744 TCGA-49-6745 
       29.75        43.20        15.02        12.13        12.99         4.93 
TCGA-50-5044 TCGA-50-5049 TCGA-50-5055 TCGA-50-5066 TCGA-50-5068 TCGA-50-5072 
       20.48        48.82        25.81         9.76        49.28         8.05 
TCGA-50-5930 TCGA-50-5931 TCGA-50-5932 TCGA-50-5933 TCGA-50-5935 TCGA-50-5936 
        9.27         8.78        35.87        77.88        21.47         8.45 
TCGA-50-5939 TCGA-50-5941 TCGA-50-5942 TCGA-50-5944 TCGA-50-5946 TCGA-50-6590 
       15.12         9.37         4.44        12.26        11.47        42.31 
TCGA-50-6591 TCGA-50-6592 TCGA-50-6593 TCGA-50-6594 TCGA-50-6595 TCGA-50-6597 
        3.88        25.51        11.05        12.16         6.21        33.37 
TCGA-55-1592 TCGA-55-1594 TCGA-55-1595 TCGA-55-1596 TCGA-55-5899 TCGA-55-6543 
       23.05        38.73        48.62        45.17         2.86         0.07 
TCGA-55-6642 TCGA-55-6712 TCGA-64-1676 TCGA-64-1677 TCGA-64-1678 TCGA-64-1680 
       32.61         0.79        56.81        20.65        39.09        37.02 
TCGA-64-5774 TCGA-64-5775 TCGA-64-5779 TCGA-64-5815 TCGA-67-3770 TCGA-67-3771 
       83.84         0.10        16.67         7.33         0.99         1.97 
TCGA-67-3772 TCGA-67-3773 TCGA-67-3774 TCGA-67-6215 TCGA-67-6216 TCGA-67-6217 
        0.59         2.04         0.59         0.89         0.69        13.87 
TCGA-71-6725 TCGA-73-4658 TCGA-73-4659 TCGA-73-4662 TCGA-73-4666 TCGA-73-4668 
        2.01        52.57        23.38        29.95        20.28        15.35 
TCGA-73-4670 TCGA-73-4675 TCGA-73-4676 TCGA-91-6828 TCGA-91-6829 TCGA-91-6831 
        0.46         1.32         4.01         1.22        41.33         1.28 
TCGA-91-6835 TCGA-91-6836 
        1.15         0.36 

  INHBA MUTATED INHBA WILD-TYPE 
           1.25            0.07 
  INHBA MUTATED INHBA WILD-TYPE 
          71.47           85.32 
  INHBA MUTATED INHBA WILD-TYPE 
          14.96           13.51 
[1] "1.2 - 71.5 (15.0)" "0.1 - 85.3 (13.5)"
     TCGA-05-4249      TCGA-05-4250      TCGA-05-4382      TCGA-05-4384 
"INHBA WILD-TYPE" "INHBA WILD-TYPE" "INHBA WILD-TYPE" "INHBA WILD-TYPE" 
     TCGA-05-4390      TCGA-05-4396      TCGA-05-4397      TCGA-05-4398 
"INHBA WILD-TYPE" "INHBA WILD-TYPE" "INHBA WILD-TYPE"   "INHBA MUTATED" 
     TCGA-05-4402      TCGA-05-4405      TCGA-05-4415      TCGA-05-4417 
"INHBA WILD-TYPE" "INHBA WILD-TYPE" "INHBA WILD-TYPE" "INHBA WILD-TYPE" 
     TCGA-05-4418      TCGA-05-4420      TCGA-05-4424      TCGA-05-4426 
  "INHBA MUTATED" "INHBA WILD-TYPE" "INHBA WILD-TYPE" "INHBA WILD-TYPE" 
     TCGA-05-4427      TCGA-05-4430      TCGA-05-4432      TCGA-05-4433 
"INHBA WILD-TYPE" "INHBA WILD-TYPE" "INHBA WILD-TYPE" "INHBA WILD-TYPE" 
     TCGA-05-4434      TCGA-05-5420      TCGA-05-5423      TCGA-05-5425 
"INHBA WILD-TYPE" "INHBA WILD-TYPE" "INHBA WILD-TYPE" "INHBA WILD-TYPE" 
     TCGA-05-5429      TCGA-05-5715      TCGA-35-3615      TCGA-35-4122 
"INHBA WILD-TYPE" "INHBA WILD-TYPE" "INHBA WILD-TYPE" "INHBA WILD-TYPE" 
     TCGA-35-4123      TCGA-35-5375      TCGA-38-4625      TCGA-38-4626 
"INHBA WILD-TYPE" "INHBA WILD-TYPE" "INHBA WILD-TYPE" "INHBA WILD-TYPE" 
     TCGA-38-4627      TCGA-38-4628      TCGA-38-4629      TCGA-38-4630 
"INHBA WILD-TYPE" "INHBA WILD-TYPE" "INHBA WILD-TYPE" "INHBA WILD-TYPE" 
     TCGA-38-4631      TCGA-38-4632      TCGA-38-6178      TCGA-44-2655 
"INHBA WILD-TYPE" "INHBA WILD-TYPE" "INHBA WILD-TYPE" "INHBA WILD-TYPE" 
     TCGA-44-2656      TCGA-44-2657      TCGA-44-2659      TCGA-44-2661 
"INHBA WILD-TYPE" "INHBA WILD-TYPE" "INHBA WILD-TYPE" "INHBA WILD-TYPE" 
     TCGA-44-2662      TCGA-44-2665      TCGA-44-2666      TCGA-44-2668 
"INHBA WILD-TYPE" "INHBA WILD-TYPE" "INHBA WILD-TYPE" "INHBA WILD-TYPE" 
     TCGA-44-3396      TCGA-44-3398      TCGA-44-3918      TCGA-44-3919 
  "INHBA MUTATED" "INHBA WILD-TYPE" "INHBA WILD-TYPE" "INHBA WILD-TYPE" 
     TCGA-44-4112      TCGA-44-5643      TCGA-44-5645      TCGA-44-6144 
"INHBA WILD-TYPE" "INHBA WILD-TYPE" "INHBA WILD-TYPE" "INHBA WILD-TYPE" 
     TCGA-44-6145      TCGA-44-6146      TCGA-44-6147      TCGA-44-6148 
"INHBA WILD-TYPE" "INHBA WILD-TYPE" "INHBA WILD-TYPE" "INHBA WILD-TYPE" 
     TCGA-44-6774      TCGA-44-6775      TCGA-44-6776      TCGA-44-6777 
  "INHBA MUTATED" "INHBA WILD-TYPE" "INHBA WILD-TYPE" "INHBA WILD-TYPE" 
     TCGA-44-6778      TCGA-44-6779      TCGA-49-4486      TCGA-49-4487 
"INHBA WILD-TYPE" "INHBA WILD-TYPE" "INHBA WILD-TYPE" "INHBA WILD-TYPE" 
     TCGA-49-4488      TCGA-49-4490      TCGA-49-4494      TCGA-49-4501 
"INHBA WILD-TYPE" "INHBA WILD-TYPE" "INHBA WILD-TYPE" "INHBA WILD-TYPE" 
     TCGA-49-4505      TCGA-49-4506      TCGA-49-4507      TCGA-49-4510 
"INHBA WILD-TYPE" "INHBA WILD-TYPE" "INHBA WILD-TYPE" "INHBA WILD-TYPE" 
     TCGA-49-4512      TCGA-49-4514      TCGA-49-6742      TCGA-49-6743 
"INHBA WILD-TYPE" "INHBA WILD-TYPE" "INHBA WILD-TYPE" "INHBA WILD-TYPE" 
     TCGA-49-6744      TCGA-49-6745      TCGA-50-5044      TCGA-50-5045 
"INHBA WILD-TYPE" "INHBA WILD-TYPE" "INHBA WILD-TYPE"   "INHBA MUTATED" 
     TCGA-50-5049      TCGA-50-5051      TCGA-50-5055      TCGA-50-5066 
"INHBA WILD-TYPE"   "INHBA MUTATED" "INHBA WILD-TYPE" "INHBA WILD-TYPE" 
     TCGA-50-5068      TCGA-50-5072      TCGA-50-5930      TCGA-50-5931 
"INHBA WILD-TYPE" "INHBA WILD-TYPE" "INHBA WILD-TYPE" "INHBA WILD-TYPE" 
     TCGA-50-5932      TCGA-50-5933      TCGA-50-5935      TCGA-50-5936 
"INHBA WILD-TYPE" "INHBA WILD-TYPE" "INHBA WILD-TYPE" "INHBA WILD-TYPE" 
     TCGA-50-5939      TCGA-50-5941      TCGA-50-5942      TCGA-50-5944 
"INHBA WILD-TYPE" "INHBA WILD-TYPE" "INHBA WILD-TYPE" "INHBA WILD-TYPE" 
     TCGA-50-5946      TCGA-50-6590      TCGA-50-6591      TCGA-50-6592 
"INHBA WILD-TYPE" "INHBA WILD-TYPE" "INHBA WILD-TYPE" "INHBA WILD-TYPE" 
     TCGA-50-6593      TCGA-50-6594      TCGA-50-6595      TCGA-50-6597 
"INHBA WILD-TYPE" "INHBA WILD-TYPE" "INHBA WILD-TYPE" "INHBA WILD-TYPE" 
     TCGA-55-1592      TCGA-55-1594      TCGA-55-1595      TCGA-55-1596 
"INHBA WILD-TYPE" "INHBA WILD-TYPE" "INHBA WILD-TYPE" "INHBA WILD-TYPE" 
     TCGA-55-5899      TCGA-55-6543      TCGA-55-6642      TCGA-55-6712 
"INHBA WILD-TYPE" "INHBA WILD-TYPE" "INHBA WILD-TYPE" "INHBA WILD-TYPE" 
     TCGA-64-1676      TCGA-64-1677      TCGA-64-1678      TCGA-64-1680 
"INHBA WILD-TYPE" "INHBA WILD-TYPE" "INHBA WILD-TYPE" "INHBA WILD-TYPE" 
     TCGA-64-5774      TCGA-64-5775      TCGA-64-5778      TCGA-64-5779 
"INHBA WILD-TYPE" "INHBA WILD-TYPE"   "INHBA MUTATED" "INHBA WILD-TYPE" 
     TCGA-64-5781      TCGA-64-5815      TCGA-67-3770      TCGA-67-3771 
  "INHBA MUTATED" "INHBA WILD-TYPE" "INHBA WILD-TYPE" "INHBA WILD-TYPE" 
     TCGA-67-3772      TCGA-67-3773      TCGA-67-3774      TCGA-67-6215 
"INHBA WILD-TYPE" "INHBA WILD-TYPE" "INHBA WILD-TYPE" "INHBA WILD-TYPE" 
     TCGA-67-6216      TCGA-67-6217      TCGA-71-6725      TCGA-73-4658 
"INHBA WILD-TYPE" "INHBA WILD-TYPE" "INHBA WILD-TYPE" "INHBA WILD-TYPE" 
     TCGA-73-4659      TCGA-73-4662      TCGA-73-4666      TCGA-73-4668 
"INHBA WILD-TYPE" "INHBA WILD-TYPE" "INHBA WILD-TYPE" "INHBA WILD-TYPE" 
     TCGA-73-4670      TCGA-73-4675      TCGA-73-4676      TCGA-73-4677 
"INHBA WILD-TYPE" "INHBA WILD-TYPE" "INHBA WILD-TYPE"   "INHBA MUTATED" 
     TCGA-91-6828      TCGA-91-6829      TCGA-91-6831      TCGA-91-6835 
"INHBA WILD-TYPE" "INHBA WILD-TYPE" "INHBA WILD-TYPE" "INHBA WILD-TYPE" 
     TCGA-91-6836 
"INHBA WILD-TYPE" 
     TCGA-05-4249      TCGA-05-4250      TCGA-05-4382      TCGA-05-4384 
"INHBA WILD-TYPE" "INHBA WILD-TYPE" "INHBA WILD-TYPE" "INHBA WILD-TYPE" 
     TCGA-05-4390      TCGA-05-4396      TCGA-05-4397      TCGA-05-4398 
"INHBA WILD-TYPE" "INHBA WILD-TYPE" "INHBA WILD-TYPE"   "INHBA MUTATED" 
     TCGA-05-4402      TCGA-05-4405      TCGA-05-4415      TCGA-05-4417 
"INHBA WILD-TYPE" "INHBA WILD-TYPE" "INHBA WILD-TYPE" "INHBA WILD-TYPE" 
     TCGA-05-4418      TCGA-05-4420      TCGA-05-4424      TCGA-05-4426 
  "INHBA MUTATED" "INHBA WILD-TYPE" "INHBA WILD-TYPE" "INHBA WILD-TYPE" 
     TCGA-05-4427      TCGA-05-4430      TCGA-05-4432      TCGA-05-4433 
"INHBA WILD-TYPE" "INHBA WILD-TYPE" "INHBA WILD-TYPE" "INHBA WILD-TYPE" 
     TCGA-05-4434      TCGA-05-5420      TCGA-05-5423      TCGA-05-5425 
"INHBA WILD-TYPE" "INHBA WILD-TYPE" "INHBA WILD-TYPE" "INHBA WILD-TYPE" 
     TCGA-05-5429      TCGA-05-5715      TCGA-35-3615      TCGA-35-4122 
"INHBA WILD-TYPE" "INHBA WILD-TYPE" "INHBA WILD-TYPE" "INHBA WILD-TYPE" 
     TCGA-35-4123      TCGA-35-5375      TCGA-38-4625      TCGA-38-4626 
"INHBA WILD-TYPE" "INHBA WILD-TYPE" "INHBA WILD-TYPE" "INHBA WILD-TYPE" 
     TCGA-38-4627      TCGA-38-4628      TCGA-38-4629      TCGA-38-4630 
"INHBA WILD-TYPE" "INHBA WILD-TYPE" "INHBA WILD-TYPE" "INHBA WILD-TYPE" 
     TCGA-38-4631      TCGA-38-4632      TCGA-38-6178      TCGA-44-2655 
"INHBA WILD-TYPE" "INHBA WILD-TYPE" "INHBA WILD-TYPE" "INHBA WILD-TYPE" 
     TCGA-44-2656      TCGA-44-2657      TCGA-44-2659      TCGA-44-2661 
"INHBA WILD-TYPE" "INHBA WILD-TYPE" "INHBA WILD-TYPE" "INHBA WILD-TYPE" 
     TCGA-44-2662      TCGA-44-2665      TCGA-44-2666      TCGA-44-2668 
"INHBA WILD-TYPE" "INHBA WILD-TYPE" "INHBA WILD-TYPE" "INHBA WILD-TYPE" 
     TCGA-44-3396      TCGA-44-3398      TCGA-44-3918      TCGA-44-3919 
  "INHBA MUTATED" "INHBA WILD-TYPE" "INHBA WILD-TYPE" "INHBA WILD-TYPE" 
     TCGA-44-4112      TCGA-44-5643      TCGA-44-5645      TCGA-44-6144 
"INHBA WILD-TYPE" "INHBA WILD-TYPE" "INHBA WILD-TYPE" "INHBA WILD-TYPE" 
     TCGA-44-6145      TCGA-44-6146      TCGA-44-6147      TCGA-44-6148 
"INHBA WILD-TYPE" "INHBA WILD-TYPE" "INHBA WILD-TYPE" "INHBA WILD-TYPE" 
     TCGA-44-6774      TCGA-44-6775      TCGA-44-6776      TCGA-44-6777 
  "INHBA MUTATED" "INHBA WILD-TYPE" "INHBA WILD-TYPE" "INHBA WILD-TYPE" 
     TCGA-44-6778      TCGA-44-6779      TCGA-49-4486      TCGA-49-4487 
"INHBA WILD-TYPE" "INHBA WILD-TYPE" "INHBA WILD-TYPE" "INHBA WILD-TYPE" 
     TCGA-49-4488      TCGA-49-4490      TCGA-49-4494      TCGA-49-4501 
"INHBA WILD-TYPE" "INHBA WILD-TYPE" "INHBA WILD-TYPE" "INHBA WILD-TYPE" 
     TCGA-49-4505      TCGA-49-4506      TCGA-49-4507      TCGA-49-4510 
"INHBA WILD-TYPE" "INHBA WILD-TYPE" "INHBA WILD-TYPE" "INHBA WILD-TYPE" 
     TCGA-49-4512      TCGA-49-4514      TCGA-49-6742      TCGA-49-6743 
"INHBA WILD-TYPE" "INHBA WILD-TYPE" "INHBA WILD-TYPE" "INHBA WILD-TYPE" 
     TCGA-49-6744      TCGA-49-6745      TCGA-50-5044      TCGA-50-5045 
"INHBA WILD-TYPE" "INHBA WILD-TYPE" "INHBA WILD-TYPE"   "INHBA MUTATED" 
     TCGA-50-5049      TCGA-50-5051      TCGA-50-5055      TCGA-50-5066 
"INHBA WILD-TYPE"   "INHBA MUTATED" "INHBA WILD-TYPE" "INHBA WILD-TYPE" 
     TCGA-50-5068      TCGA-50-5072      TCGA-50-5930      TCGA-50-5931 
"INHBA WILD-TYPE" "INHBA WILD-TYPE" "INHBA WILD-TYPE" "INHBA WILD-TYPE" 
     TCGA-50-5932      TCGA-50-5933      TCGA-50-5935      TCGA-50-5936 
"INHBA WILD-TYPE" "INHBA WILD-TYPE" "INHBA WILD-TYPE" "INHBA WILD-TYPE" 
     TCGA-50-5939      TCGA-50-5941      TCGA-50-5942      TCGA-50-5944 
"INHBA WILD-TYPE" "INHBA WILD-TYPE" "INHBA WILD-TYPE" "INHBA WILD-TYPE" 
     TCGA-50-5946      TCGA-50-6590      TCGA-50-6591      TCGA-50-6592 
"INHBA WILD-TYPE" "INHBA WILD-TYPE" "INHBA WILD-TYPE" "INHBA WILD-TYPE" 
     TCGA-50-6593      TCGA-50-6594      TCGA-50-6595      TCGA-50-6597 
"INHBA WILD-TYPE" "INHBA WILD-TYPE" "INHBA WILD-TYPE" "INHBA WILD-TYPE" 
     TCGA-55-1592      TCGA-55-1594      TCGA-55-1595      TCGA-55-1596 
"INHBA WILD-TYPE" "INHBA WILD-TYPE" "INHBA WILD-TYPE" "INHBA WILD-TYPE" 
     TCGA-55-5899      TCGA-55-6543      TCGA-55-6642      TCGA-55-6712 
"INHBA WILD-TYPE" "INHBA WILD-TYPE" "INHBA WILD-TYPE" "INHBA WILD-TYPE" 
     TCGA-64-1676      TCGA-64-1677      TCGA-64-1678      TCGA-64-1680 
"INHBA WILD-TYPE" "INHBA WILD-TYPE" "INHBA WILD-TYPE" "INHBA WILD-TYPE" 
     TCGA-64-5774      TCGA-64-5775      TCGA-64-5778      TCGA-64-5779 
"INHBA WILD-TYPE" "INHBA WILD-TYPE"   "INHBA MUTATED" "INHBA WILD-TYPE" 
     TCGA-64-5781      TCGA-64-5815      TCGA-67-3770      TCGA-67-3771 
  "INHBA MUTATED" "INHBA WILD-TYPE" "INHBA WILD-TYPE" "INHBA WILD-TYPE" 
     TCGA-67-3772      TCGA-67-3773      TCGA-67-3774      TCGA-67-6215 
"INHBA WILD-TYPE" "INHBA WILD-TYPE" "INHBA WILD-TYPE" "INHBA WILD-TYPE" 
     TCGA-67-6216      TCGA-67-6217      TCGA-71-6725      TCGA-73-4658 
"INHBA WILD-TYPE" "INHBA WILD-TYPE" "INHBA WILD-TYPE" "INHBA WILD-TYPE" 
     TCGA-73-4659      TCGA-73-4662      TCGA-73-4666      TCGA-73-4668 
"INHBA WILD-TYPE" "INHBA WILD-TYPE" "INHBA WILD-TYPE" "INHBA WILD-TYPE" 
     TCGA-73-4670      TCGA-73-4675      TCGA-73-4676      TCGA-73-4677 
"INHBA WILD-TYPE" "INHBA WILD-TYPE" "INHBA WILD-TYPE"   "INHBA MUTATED" 
     TCGA-91-6828      TCGA-91-6829      TCGA-91-6831      TCGA-91-6835 
"INHBA WILD-TYPE" "INHBA WILD-TYPE" "INHBA WILD-TYPE" "INHBA WILD-TYPE" 
     TCGA-91-6836 
"INHBA WILD-TYPE" 
     TCGA-05-4249      TCGA-05-4250      TCGA-05-4382      TCGA-05-4384 
"INHBA WILD-TYPE" "INHBA WILD-TYPE" "INHBA WILD-TYPE" "INHBA WILD-TYPE" 
     TCGA-05-4390      TCGA-05-4396      TCGA-05-4397      TCGA-05-4398 
"INHBA WILD-TYPE" "INHBA WILD-TYPE" "INHBA WILD-TYPE"   "INHBA MUTATED" 
     TCGA-05-4402      TCGA-05-4405      TCGA-05-4415      TCGA-05-4417 
"INHBA WILD-TYPE" "INHBA WILD-TYPE" "INHBA WILD-TYPE" "INHBA WILD-TYPE" 
     TCGA-05-4418      TCGA-05-4420      TCGA-05-4424      TCGA-05-4426 
  "INHBA MUTATED" "INHBA WILD-TYPE" "INHBA WILD-TYPE" "INHBA WILD-TYPE" 
     TCGA-05-4427      TCGA-05-4430      TCGA-05-4432      TCGA-05-4433 
"INHBA WILD-TYPE" "INHBA WILD-TYPE" "INHBA WILD-TYPE" "INHBA WILD-TYPE" 
     TCGA-05-4434      TCGA-05-5420      TCGA-05-5423      TCGA-05-5425 
"INHBA WILD-TYPE" "INHBA WILD-TYPE" "INHBA WILD-TYPE" "INHBA WILD-TYPE" 
     TCGA-05-5429      TCGA-05-5715      TCGA-35-3615      TCGA-35-4122 
"INHBA WILD-TYPE" "INHBA WILD-TYPE" "INHBA WILD-TYPE" "INHBA WILD-TYPE" 
     TCGA-35-4123      TCGA-35-5375      TCGA-38-4625      TCGA-38-4626 
"INHBA WILD-TYPE" "INHBA WILD-TYPE" "INHBA WILD-TYPE" "INHBA WILD-TYPE" 
     TCGA-38-4627      TCGA-38-4628      TCGA-38-4629      TCGA-38-4630 
"INHBA WILD-TYPE" "INHBA WILD-TYPE" "INHBA WILD-TYPE" "INHBA WILD-TYPE" 
     TCGA-38-4631      TCGA-38-4632      TCGA-38-6178      TCGA-44-2655 
"INHBA WILD-TYPE" "INHBA WILD-TYPE" "INHBA WILD-TYPE" "INHBA WILD-TYPE" 
     TCGA-44-2656      TCGA-44-2657      TCGA-44-2659      TCGA-44-2661 
"INHBA WILD-TYPE" "INHBA WILD-TYPE" "INHBA WILD-TYPE" "INHBA WILD-TYPE" 
     TCGA-44-2662      TCGA-44-2665      TCGA-44-2666      TCGA-44-2668 
"INHBA WILD-TYPE" "INHBA WILD-TYPE" "INHBA WILD-TYPE" "INHBA WILD-TYPE" 
     TCGA-44-3396      TCGA-44-3398      TCGA-44-3918      TCGA-44-3919 
  "INHBA MUTATED" "INHBA WILD-TYPE" "INHBA WILD-TYPE" "INHBA WILD-TYPE" 
     TCGA-44-4112      TCGA-44-5643      TCGA-44-5645      TCGA-44-6144 
"INHBA WILD-TYPE" "INHBA WILD-TYPE" "INHBA WILD-TYPE" "INHBA WILD-TYPE" 
     TCGA-44-6145      TCGA-44-6146      TCGA-44-6147      TCGA-44-6148 
"INHBA WILD-TYPE" "INHBA WILD-TYPE" "INHBA WILD-TYPE" "INHBA WILD-TYPE" 
     TCGA-44-6774      TCGA-44-6775      TCGA-44-6776      TCGA-44-6777 
  "INHBA MUTATED" "INHBA WILD-TYPE" "INHBA WILD-TYPE" "INHBA WILD-TYPE" 
     TCGA-44-6778      TCGA-44-6779      TCGA-49-4486      TCGA-49-4487 
"INHBA WILD-TYPE" "INHBA WILD-TYPE" "INHBA WILD-TYPE" "INHBA WILD-TYPE" 
     TCGA-49-4488      TCGA-49-4490      TCGA-49-4494      TCGA-49-4501 
"INHBA WILD-TYPE" "INHBA WILD-TYPE" "INHBA WILD-TYPE" "INHBA WILD-TYPE" 
     TCGA-49-4505      TCGA-49-4506      TCGA-49-4507      TCGA-49-4510 
"INHBA WILD-TYPE" "INHBA WILD-TYPE" "INHBA WILD-TYPE" "INHBA WILD-TYPE" 
     TCGA-49-4512      TCGA-49-4514      TCGA-49-6742      TCGA-49-6743 
"INHBA WILD-TYPE" "INHBA WILD-TYPE" "INHBA WILD-TYPE" "INHBA WILD-TYPE" 
     TCGA-49-6744      TCGA-49-6745      TCGA-50-5044      TCGA-50-5045 
"INHBA WILD-TYPE" "INHBA WILD-TYPE" "INHBA WILD-TYPE"   "INHBA MUTATED" 
     TCGA-50-5049      TCGA-50-5051      TCGA-50-5055      TCGA-50-5066 
"INHBA WILD-TYPE"   "INHBA MUTATED" "INHBA WILD-TYPE" "INHBA WILD-TYPE" 
     TCGA-50-5068      TCGA-50-5072      TCGA-50-5930      TCGA-50-5931 
"INHBA WILD-TYPE" "INHBA WILD-TYPE" "INHBA WILD-TYPE" "INHBA WILD-TYPE" 
     TCGA-50-5932      TCGA-50-5933      TCGA-50-5935      TCGA-50-5936 
"INHBA WILD-TYPE" "INHBA WILD-TYPE" "INHBA WILD-TYPE" "INHBA WILD-TYPE" 
     TCGA-50-5939      TCGA-50-5941      TCGA-50-5942      TCGA-50-5944 
"INHBA WILD-TYPE" "INHBA WILD-TYPE" "INHBA WILD-TYPE" "INHBA WILD-TYPE" 
     TCGA-50-5946      TCGA-50-6590      TCGA-50-6591      TCGA-50-6592 
"INHBA WILD-TYPE" "INHBA WILD-TYPE" "INHBA WILD-TYPE" "INHBA WILD-TYPE" 
     TCGA-50-6593      TCGA-50-6594      TCGA-50-6595      TCGA-50-6597 
"INHBA WILD-TYPE" "INHBA WILD-TYPE" "INHBA WILD-TYPE" "INHBA WILD-TYPE" 
     TCGA-55-1592      TCGA-55-1594      TCGA-55-1595      TCGA-55-1596 
"INHBA WILD-TYPE" "INHBA WILD-TYPE" "INHBA WILD-TYPE" "INHBA WILD-TYPE" 
     TCGA-55-5899      TCGA-55-6543      TCGA-55-6642      TCGA-55-6712 
"INHBA WILD-TYPE" "INHBA WILD-TYPE" "INHBA WILD-TYPE" "INHBA WILD-TYPE" 
     TCGA-64-1676      TCGA-64-1677      TCGA-64-1678      TCGA-64-1680 
"INHBA WILD-TYPE" "INHBA WILD-TYPE" "INHBA WILD-TYPE" "INHBA WILD-TYPE" 
     TCGA-64-5774      TCGA-64-5775      TCGA-64-5778      TCGA-64-5779 
"INHBA WILD-TYPE" "INHBA WILD-TYPE"   "INHBA MUTATED" "INHBA WILD-TYPE" 
     TCGA-64-5781      TCGA-64-5815      TCGA-67-3770      TCGA-67-3771 
  "INHBA MUTATED" "INHBA WILD-TYPE" "INHBA WILD-TYPE" "INHBA WILD-TYPE" 
     TCGA-67-3772      TCGA-67-3773      TCGA-67-3774      TCGA-67-6215 
"INHBA WILD-TYPE" "INHBA WILD-TYPE" "INHBA WILD-TYPE" "INHBA WILD-TYPE" 
     TCGA-67-6216      TCGA-67-6217      TCGA-71-6725      TCGA-73-4658 
"INHBA WILD-TYPE" "INHBA WILD-TYPE" "INHBA WILD-TYPE" "INHBA WILD-TYPE" 
     TCGA-73-4659      TCGA-73-4662      TCGA-73-4666      TCGA-73-4668 
"INHBA WILD-TYPE" "INHBA WILD-TYPE" "INHBA WILD-TYPE" "INHBA WILD-TYPE" 
     TCGA-73-4670      TCGA-73-4675      TCGA-73-4676      TCGA-73-4677 
"INHBA WILD-TYPE" "INHBA WILD-TYPE" "INHBA WILD-TYPE"   "INHBA MUTATED" 
     TCGA-91-6828      TCGA-91-6829      TCGA-91-6831      TCGA-91-6835 
"INHBA WILD-TYPE" "INHBA WILD-TYPE" "INHBA WILD-TYPE" "INHBA WILD-TYPE" 
     TCGA-91-6836 
"INHBA WILD-TYPE" 
[1] "hr=" "1.4"
D133V2, continuous
D133V3, binary
[1] "tbl2"
                 cls
clus              [,1] [,2]
  INHBA MUTATED      6    3
  INHBA WILD-TYPE   87   76
        clus
vv       INHBA MUTATED INHBA WILD-TYPE
  FEMALE             6              87
  MALE               3              76
D133V4, continuous
[1] "Remove cluster labels:" "INHBA MUTATED"         
clus
  INHBA MUTATED INHBA WILD-TYPE 
              1              11 
     TCGA-35-4122      TCGA-35-4123      TCGA-35-5375      TCGA-64-1677 
"INHBA WILD-TYPE" "INHBA WILD-TYPE" "INHBA WILD-TYPE" "INHBA WILD-TYPE" 
     TCGA-71-6725      TCGA-73-4659      TCGA-73-4662      TCGA-73-4666 
"INHBA WILD-TYPE" "INHBA WILD-TYPE" "INHBA WILD-TYPE" "INHBA WILD-TYPE" 
     TCGA-73-4668      TCGA-73-4676      TCGA-75-5122 
"INHBA WILD-TYPE" "INHBA WILD-TYPE" "INHBA WILD-TYPE" 
D133V5, multiclass
D133V6, multiclass
    clus
vv   INHBA MUTATED INHBA WILD-TYPE
  T1             1              40
  T2             6             102
  T3             1              13
  T4             1               7
D133V7, multiclass
       clus
vv      INHBA MUTATED INHBA WILD-TYPE
  N0                3              92
  N1                1              36
  N2+N3             5              30
D133V8, multiclass
    clus
vv   INHBA MUTATED INHBA WILD-TYPE
  M0             9             128
  M1             0               9
  MX             0              22
D133V9, multiclass
     clus
vv    INHBA MUTATED INHBA WILD-TYPE
  I               4              84
  II              0              33
  III             5              34
  IV              0               9
D133V10, binary
[1] "tbl2"
                 cls
clus              [,1] [,2]
  INHBA MUTATED      2    7
  INHBA WILD-TYPE   14  149
     clus
vv    INHBA MUTATED INHBA WILD-TYPE
  NO              2              14
  YES             7             149
D133V11, continuous
D133V12, continuous
D133V13, multiclass
                                             clus
vv                                            INHBA MUTATED INHBA WILD-TYPE
  CURRENT REFORMED SMOKER FOR < OR = 15 YEARS             3              59
  CURRENT REFORMED SMOKER FOR > 15 YEARS                  1              45
  CURRENT SMOKER                                          4              24
  LIFELONG NON-SMOKER                                     0              24
D133V14, continuous

Clustering(134) Variable = DIO2 MUTATION ANALYSIS
D134V1, survival
                sevent
clus2             0  1
  DIO2 MUTATED    5  1
  DIO2 WILD-TYPE 94 49
  DIO2 MUTATED DIO2 WILD-TYPE 
             6            143 
  DIO2 MUTATED DIO2 WILD-TYPE 
             1             49 
$`DIO2 MUTATED`
TCGA-05-4382 TCGA-38-4630 TCGA-44-2656 TCGA-44-3918 TCGA-44-6776 TCGA-73-4670 
       19.92        35.28        19.10         6.44        63.72         0.46 

$`DIO2 WILD-TYPE`
TCGA-05-4249 TCGA-05-4250 TCGA-05-4384 TCGA-05-4390 TCGA-05-4396 TCGA-05-4397 
       38.07         3.98        14.01        37.02         9.96        24.03 
TCGA-05-4398 TCGA-05-4402 TCGA-05-4405 TCGA-05-4415 TCGA-05-4417 TCGA-05-4418 
       47.05         8.02        20.05         2.96        14.93         8.98 
TCGA-05-4420 TCGA-05-4424 TCGA-05-4426 TCGA-05-4427 TCGA-05-4430 TCGA-05-4432 
       29.95        30.02        26.01        26.01        25.02        25.02 
TCGA-05-4433 TCGA-05-4434 TCGA-05-5420 TCGA-05-5423 TCGA-05-5425 TCGA-05-5429 
       24.00        15.02         1.02         4.96         2.96         0.99 
TCGA-05-5715 TCGA-35-3615 TCGA-35-4122 TCGA-35-4123 TCGA-35-5375 TCGA-38-4625 
        2.04         0.46         7.36         5.95         8.68        47.61 
TCGA-38-4626 TCGA-38-4627 TCGA-38-4628 TCGA-38-4629 TCGA-38-4631 TCGA-38-4632 
       85.32        37.71        49.02        28.37        11.64        44.61 
TCGA-38-6178 TCGA-44-2655 TCGA-44-2657 TCGA-44-2659 TCGA-44-2661 TCGA-44-2662 
        5.19        18.87        13.15        17.39         3.39        15.78 
TCGA-44-2665 TCGA-44-2666 TCGA-44-2668 TCGA-44-3396 TCGA-44-3398 TCGA-44-3919 
       13.15         3.19         8.09        10.22         8.32         6.21 
TCGA-44-4112 TCGA-44-5643 TCGA-44-5645 TCGA-44-6144 TCGA-44-6145 TCGA-44-6146 
        4.60         3.48         6.84         0.30         3.35         9.93 
TCGA-44-6147 TCGA-44-6148 TCGA-44-6774 TCGA-44-6775 TCGA-44-6777 TCGA-44-6778 
        7.76         3.12         5.42         2.70        32.45        36.49 
TCGA-44-6779 TCGA-49-4486 TCGA-49-4487 TCGA-49-4488 TCGA-49-4490 TCGA-49-4494 
       16.41        76.21        28.11        28.57        12.66        35.54 
TCGA-49-4501 TCGA-49-4505 TCGA-49-4506 TCGA-49-4507 TCGA-49-4510 TCGA-49-4512 
       46.72        14.07        32.84         8.81        29.46        29.75 
TCGA-49-4514 TCGA-49-6742 TCGA-49-6743 TCGA-49-6744 TCGA-49-6745 TCGA-50-5044 
       43.20        15.02        12.13        12.99         4.93        20.48 
TCGA-50-5045 TCGA-50-5049 TCGA-50-5051 TCGA-50-5055 TCGA-50-5066 TCGA-50-5068 
       71.47        48.82        14.96        25.81         9.76        49.28 
TCGA-50-5072 TCGA-50-5930 TCGA-50-5931 TCGA-50-5932 TCGA-50-5933 TCGA-50-5935 
        8.05         9.27         8.78        35.87        77.88        21.47 
TCGA-50-5936 TCGA-50-5939 TCGA-50-5941 TCGA-50-5942 TCGA-50-5944 TCGA-50-5946 
        8.45        15.12         9.37         4.44        12.26        11.47 
TCGA-50-6590 TCGA-50-6591 TCGA-50-6592 TCGA-50-6593 TCGA-50-6594 TCGA-50-6595 
       42.31         3.88        25.51        11.05        12.16         6.21 
TCGA-50-6597 TCGA-55-1592 TCGA-55-1594 TCGA-55-1595 TCGA-55-1596 TCGA-55-5899 
       33.37        23.05        38.73        48.62        45.17         2.86 
TCGA-55-6543 TCGA-55-6642 TCGA-55-6712 TCGA-64-1676 TCGA-64-1677 TCGA-64-1678 
        0.07        32.61         0.79        56.81        20.65        39.09 
TCGA-64-1680 TCGA-64-5774 TCGA-64-5775 TCGA-64-5778 TCGA-64-5779 TCGA-64-5781 
       37.02        83.84         0.10        30.44        16.67        39.52 
TCGA-64-5815 TCGA-67-3770 TCGA-67-3771 TCGA-67-3772 TCGA-67-3773 TCGA-67-3774 
        7.33         0.99         1.97         0.59         2.04         0.59 
TCGA-67-6215 TCGA-67-6216 TCGA-67-6217 TCGA-71-6725 TCGA-73-4658 TCGA-73-4659 
        0.89         0.69        13.87         2.01        52.57        23.38 
TCGA-73-4662 TCGA-73-4666 TCGA-73-4668 TCGA-73-4675 TCGA-73-4676 TCGA-73-4677 
       29.95        20.28        15.35         1.32         4.01         1.25 
TCGA-91-6828 TCGA-91-6829 TCGA-91-6831 TCGA-91-6835 TCGA-91-6836 
        1.22        41.33         1.28         1.15         0.36 

  DIO2 MUTATED DIO2 WILD-TYPE 
          0.46           0.07 
  DIO2 MUTATED DIO2 WILD-TYPE 
         63.72          85.32 
  DIO2 MUTATED DIO2 WILD-TYPE 
         19.51          13.15 
[1] "0.5 - 63.7 (19.5)" "0.1 - 85.3 (13.2)"
    TCGA-05-4249     TCGA-05-4250     TCGA-05-4382     TCGA-05-4384 
"DIO2 WILD-TYPE" "DIO2 WILD-TYPE"   "DIO2 MUTATED" "DIO2 WILD-TYPE" 
    TCGA-05-4390     TCGA-05-4396     TCGA-05-4397     TCGA-05-4398 
"DIO2 WILD-TYPE" "DIO2 WILD-TYPE" "DIO2 WILD-TYPE" "DIO2 WILD-TYPE" 
    TCGA-05-4402     TCGA-05-4405     TCGA-05-4415     TCGA-05-4417 
"DIO2 WILD-TYPE" "DIO2 WILD-TYPE" "DIO2 WILD-TYPE" "DIO2 WILD-TYPE" 
    TCGA-05-4418     TCGA-05-4420     TCGA-05-4424     TCGA-05-4426 
"DIO2 WILD-TYPE" "DIO2 WILD-TYPE" "DIO2 WILD-TYPE" "DIO2 WILD-TYPE" 
    TCGA-05-4427     TCGA-05-4430     TCGA-05-4432     TCGA-05-4433 
"DIO2 WILD-TYPE" "DIO2 WILD-TYPE" "DIO2 WILD-TYPE" "DIO2 WILD-TYPE" 
    TCGA-05-4434     TCGA-05-5420     TCGA-05-5423     TCGA-05-5425 
"DIO2 WILD-TYPE" "DIO2 WILD-TYPE" "DIO2 WILD-TYPE" "DIO2 WILD-TYPE" 
    TCGA-05-5429     TCGA-05-5715     TCGA-35-3615     TCGA-35-4122 
"DIO2 WILD-TYPE" "DIO2 WILD-TYPE" "DIO2 WILD-TYPE" "DIO2 WILD-TYPE" 
    TCGA-35-4123     TCGA-35-5375     TCGA-38-4625     TCGA-38-4626 
"DIO2 WILD-TYPE" "DIO2 WILD-TYPE" "DIO2 WILD-TYPE" "DIO2 WILD-TYPE" 
    TCGA-38-4627     TCGA-38-4628     TCGA-38-4629     TCGA-38-4630 
"DIO2 WILD-TYPE" "DIO2 WILD-TYPE" "DIO2 WILD-TYPE"   "DIO2 MUTATED" 
    TCGA-38-4631     TCGA-38-4632     TCGA-38-6178     TCGA-44-2655 
"DIO2 WILD-TYPE" "DIO2 WILD-TYPE" "DIO2 WILD-TYPE" "DIO2 WILD-TYPE" 
    TCGA-44-2656     TCGA-44-2657     TCGA-44-2659     TCGA-44-2661 
  "DIO2 MUTATED" "DIO2 WILD-TYPE" "DIO2 WILD-TYPE" "DIO2 WILD-TYPE" 
    TCGA-44-2662     TCGA-44-2665     TCGA-44-2666     TCGA-44-2668 
"DIO2 WILD-TYPE" "DIO2 WILD-TYPE" "DIO2 WILD-TYPE" "DIO2 WILD-TYPE" 
    TCGA-44-3396     TCGA-44-3398     TCGA-44-3918     TCGA-44-3919 
"DIO2 WILD-TYPE" "DIO2 WILD-TYPE"   "DIO2 MUTATED" "DIO2 WILD-TYPE" 
    TCGA-44-4112     TCGA-44-5643     TCGA-44-5645     TCGA-44-6144 
"DIO2 WILD-TYPE" "DIO2 WILD-TYPE" "DIO2 WILD-TYPE" "DIO2 WILD-TYPE" 
    TCGA-44-6145     TCGA-44-6146     TCGA-44-6147     TCGA-44-6148 
"DIO2 WILD-TYPE" "DIO2 WILD-TYPE" "DIO2 WILD-TYPE" "DIO2 WILD-TYPE" 
    TCGA-44-6774     TCGA-44-6775     TCGA-44-6776     TCGA-44-6777 
"DIO2 WILD-TYPE" "DIO2 WILD-TYPE"   "DIO2 MUTATED" "DIO2 WILD-TYPE" 
    TCGA-44-6778     TCGA-44-6779     TCGA-49-4486     TCGA-49-4487 
"DIO2 WILD-TYPE" "DIO2 WILD-TYPE" "DIO2 WILD-TYPE" "DIO2 WILD-TYPE" 
    TCGA-49-4488     TCGA-49-4490     TCGA-49-4494     TCGA-49-4501 
"DIO2 WILD-TYPE" "DIO2 WILD-TYPE" "DIO2 WILD-TYPE" "DIO2 WILD-TYPE" 
    TCGA-49-4505     TCGA-49-4506     TCGA-49-4507     TCGA-49-4510 
"DIO2 WILD-TYPE" "DIO2 WILD-TYPE" "DIO2 WILD-TYPE" "DIO2 WILD-TYPE" 
    TCGA-49-4512     TCGA-49-4514     TCGA-49-6742     TCGA-49-6743 
"DIO2 WILD-TYPE" "DIO2 WILD-TYPE" "DIO2 WILD-TYPE" "DIO2 WILD-TYPE" 
    TCGA-49-6744     TCGA-49-6745     TCGA-50-5044     TCGA-50-5045 
"DIO2 WILD-TYPE" "DIO2 WILD-TYPE" "DIO2 WILD-TYPE" "DIO2 WILD-TYPE" 
    TCGA-50-5049     TCGA-50-5051     TCGA-50-5055     TCGA-50-5066 
"DIO2 WILD-TYPE" "DIO2 WILD-TYPE" "DIO2 WILD-TYPE" "DIO2 WILD-TYPE" 
    TCGA-50-5068     TCGA-50-5072     TCGA-50-5930     TCGA-50-5931 
"DIO2 WILD-TYPE" "DIO2 WILD-TYPE" "DIO2 WILD-TYPE" "DIO2 WILD-TYPE" 
    TCGA-50-5932     TCGA-50-5933     TCGA-50-5935     TCGA-50-5936 
"DIO2 WILD-TYPE" "DIO2 WILD-TYPE" "DIO2 WILD-TYPE" "DIO2 WILD-TYPE" 
    TCGA-50-5939     TCGA-50-5941     TCGA-50-5942     TCGA-50-5944 
"DIO2 WILD-TYPE" "DIO2 WILD-TYPE" "DIO2 WILD-TYPE" "DIO2 WILD-TYPE" 
    TCGA-50-5946     TCGA-50-6590     TCGA-50-6591     TCGA-50-6592 
"DIO2 WILD-TYPE" "DIO2 WILD-TYPE" "DIO2 WILD-TYPE" "DIO2 WILD-TYPE" 
    TCGA-50-6593     TCGA-50-6594     TCGA-50-6595     TCGA-50-6597 
"DIO2 WILD-TYPE" "DIO2 WILD-TYPE" "DIO2 WILD-TYPE" "DIO2 WILD-TYPE" 
    TCGA-55-1592     TCGA-55-1594     TCGA-55-1595     TCGA-55-1596 
"DIO2 WILD-TYPE" "DIO2 WILD-TYPE" "DIO2 WILD-TYPE" "DIO2 WILD-TYPE" 
    TCGA-55-5899     TCGA-55-6543     TCGA-55-6642     TCGA-55-6712 
"DIO2 WILD-TYPE" "DIO2 WILD-TYPE" "DIO2 WILD-TYPE" "DIO2 WILD-TYPE" 
    TCGA-64-1676     TCGA-64-1677     TCGA-64-1678     TCGA-64-1680 
"DIO2 WILD-TYPE" "DIO2 WILD-TYPE" "DIO2 WILD-TYPE" "DIO2 WILD-TYPE" 
    TCGA-64-5774     TCGA-64-5775     TCGA-64-5778     TCGA-64-5779 
"DIO2 WILD-TYPE" "DIO2 WILD-TYPE" "DIO2 WILD-TYPE" "DIO2 WILD-TYPE" 
    TCGA-64-5781     TCGA-64-5815     TCGA-67-3770     TCGA-67-3771 
"DIO2 WILD-TYPE" "DIO2 WILD-TYPE" "DIO2 WILD-TYPE" "DIO2 WILD-TYPE" 
    TCGA-67-3772     TCGA-67-3773     TCGA-67-3774     TCGA-67-6215 
"DIO2 WILD-TYPE" "DIO2 WILD-TYPE" "DIO2 WILD-TYPE" "DIO2 WILD-TYPE" 
    TCGA-67-6216     TCGA-67-6217     TCGA-71-6725     TCGA-73-4658 
"DIO2 WILD-TYPE" "DIO2 WILD-TYPE" "DIO2 WILD-TYPE" "DIO2 WILD-TYPE" 
    TCGA-73-4659     TCGA-73-4662     TCGA-73-4666     TCGA-73-4668 
"DIO2 WILD-TYPE" "DIO2 WILD-TYPE" "DIO2 WILD-TYPE" "DIO2 WILD-TYPE" 
    TCGA-73-4670     TCGA-73-4675     TCGA-73-4676     TCGA-73-4677 
  "DIO2 MUTATED" "DIO2 WILD-TYPE" "DIO2 WILD-TYPE" "DIO2 WILD-TYPE" 
    TCGA-91-6828     TCGA-91-6829     TCGA-91-6831     TCGA-91-6835 
"DIO2 WILD-TYPE" "DIO2 WILD-TYPE" "DIO2 WILD-TYPE" "DIO2 WILD-TYPE" 
    TCGA-91-6836 
"DIO2 WILD-TYPE" 
    TCGA-05-4249     TCGA-05-4250     TCGA-05-4382     TCGA-05-4384 
"DIO2 WILD-TYPE" "DIO2 WILD-TYPE"   "DIO2 MUTATED" "DIO2 WILD-TYPE" 
    TCGA-05-4390     TCGA-05-4396     TCGA-05-4397     TCGA-05-4398 
"DIO2 WILD-TYPE" "DIO2 WILD-TYPE" "DIO2 WILD-TYPE" "DIO2 WILD-TYPE" 
    TCGA-05-4402     TCGA-05-4405     TCGA-05-4415     TCGA-05-4417 
"DIO2 WILD-TYPE" "DIO2 WILD-TYPE" "DIO2 WILD-TYPE" "DIO2 WILD-TYPE" 
    TCGA-05-4418     TCGA-05-4420     TCGA-05-4424     TCGA-05-4426 
"DIO2 WILD-TYPE" "DIO2 WILD-TYPE" "DIO2 WILD-TYPE" "DIO2 WILD-TYPE" 
    TCGA-05-4427     TCGA-05-4430     TCGA-05-4432     TCGA-05-4433 
"DIO2 WILD-TYPE" "DIO2 WILD-TYPE" "DIO2 WILD-TYPE" "DIO2 WILD-TYPE" 
    TCGA-05-4434     TCGA-05-5420     TCGA-05-5423     TCGA-05-5425 
"DIO2 WILD-TYPE" "DIO2 WILD-TYPE" "DIO2 WILD-TYPE" "DIO2 WILD-TYPE" 
    TCGA-05-5429     TCGA-05-5715     TCGA-35-3615     TCGA-35-4122 
"DIO2 WILD-TYPE" "DIO2 WILD-TYPE" "DIO2 WILD-TYPE" "DIO2 WILD-TYPE" 
    TCGA-35-4123     TCGA-35-5375     TCGA-38-4625     TCGA-38-4626 
"DIO2 WILD-TYPE" "DIO2 WILD-TYPE" "DIO2 WILD-TYPE" "DIO2 WILD-TYPE" 
    TCGA-38-4627     TCGA-38-4628     TCGA-38-4629     TCGA-38-4630 
"DIO2 WILD-TYPE" "DIO2 WILD-TYPE" "DIO2 WILD-TYPE"   "DIO2 MUTATED" 
    TCGA-38-4631     TCGA-38-4632     TCGA-38-6178     TCGA-44-2655 
"DIO2 WILD-TYPE" "DIO2 WILD-TYPE" "DIO2 WILD-TYPE" "DIO2 WILD-TYPE" 
    TCGA-44-2656     TCGA-44-2657     TCGA-44-2659     TCGA-44-2661 
  "DIO2 MUTATED" "DIO2 WILD-TYPE" "DIO2 WILD-TYPE" "DIO2 WILD-TYPE" 
    TCGA-44-2662     TCGA-44-2665     TCGA-44-2666     TCGA-44-2668 
"DIO2 WILD-TYPE" "DIO2 WILD-TYPE" "DIO2 WILD-TYPE" "DIO2 WILD-TYPE" 
    TCGA-44-3396     TCGA-44-3398     TCGA-44-3918     TCGA-44-3919 
"DIO2 WILD-TYPE" "DIO2 WILD-TYPE"   "DIO2 MUTATED" "DIO2 WILD-TYPE" 
    TCGA-44-4112     TCGA-44-5643     TCGA-44-5645     TCGA-44-6144 
"DIO2 WILD-TYPE" "DIO2 WILD-TYPE" "DIO2 WILD-TYPE" "DIO2 WILD-TYPE" 
    TCGA-44-6145     TCGA-44-6146     TCGA-44-6147     TCGA-44-6148 
"DIO2 WILD-TYPE" "DIO2 WILD-TYPE" "DIO2 WILD-TYPE" "DIO2 WILD-TYPE" 
    TCGA-44-6774     TCGA-44-6775     TCGA-44-6776     TCGA-44-6777 
"DIO2 WILD-TYPE" "DIO2 WILD-TYPE"   "DIO2 MUTATED" "DIO2 WILD-TYPE" 
    TCGA-44-6778     TCGA-44-6779     TCGA-49-4486     TCGA-49-4487 
"DIO2 WILD-TYPE" "DIO2 WILD-TYPE" "DIO2 WILD-TYPE" "DIO2 WILD-TYPE" 
    TCGA-49-4488     TCGA-49-4490     TCGA-49-4494     TCGA-49-4501 
"DIO2 WILD-TYPE" "DIO2 WILD-TYPE" "DIO2 WILD-TYPE" "DIO2 WILD-TYPE" 
    TCGA-49-4505     TCGA-49-4506     TCGA-49-4507     TCGA-49-4510 
"DIO2 WILD-TYPE" "DIO2 WILD-TYPE" "DIO2 WILD-TYPE" "DIO2 WILD-TYPE" 
    TCGA-49-4512     TCGA-49-4514     TCGA-49-6742     TCGA-49-6743 
"DIO2 WILD-TYPE" "DIO2 WILD-TYPE" "DIO2 WILD-TYPE" "DIO2 WILD-TYPE" 
    TCGA-49-6744     TCGA-49-6745     TCGA-50-5044     TCGA-50-5045 
"DIO2 WILD-TYPE" "DIO2 WILD-TYPE" "DIO2 WILD-TYPE" "DIO2 WILD-TYPE" 
    TCGA-50-5049     TCGA-50-5051     TCGA-50-5055     TCGA-50-5066 
"DIO2 WILD-TYPE" "DIO2 WILD-TYPE" "DIO2 WILD-TYPE" "DIO2 WILD-TYPE" 
    TCGA-50-5068     TCGA-50-5072     TCGA-50-5930     TCGA-50-5931 
"DIO2 WILD-TYPE" "DIO2 WILD-TYPE" "DIO2 WILD-TYPE" "DIO2 WILD-TYPE" 
    TCGA-50-5932     TCGA-50-5933     TCGA-50-5935     TCGA-50-5936 
"DIO2 WILD-TYPE" "DIO2 WILD-TYPE" "DIO2 WILD-TYPE" "DIO2 WILD-TYPE" 
    TCGA-50-5939     TCGA-50-5941     TCGA-50-5942     TCGA-50-5944 
"DIO2 WILD-TYPE" "DIO2 WILD-TYPE" "DIO2 WILD-TYPE" "DIO2 WILD-TYPE" 
    TCGA-50-5946     TCGA-50-6590     TCGA-50-6591     TCGA-50-6592 
"DIO2 WILD-TYPE" "DIO2 WILD-TYPE" "DIO2 WILD-TYPE" "DIO2 WILD-TYPE" 
    TCGA-50-6593     TCGA-50-6594     TCGA-50-6595     TCGA-50-6597 
"DIO2 WILD-TYPE" "DIO2 WILD-TYPE" "DIO2 WILD-TYPE" "DIO2 WILD-TYPE" 
    TCGA-55-1592     TCGA-55-1594     TCGA-55-1595     TCGA-55-1596 
"DIO2 WILD-TYPE" "DIO2 WILD-TYPE" "DIO2 WILD-TYPE" "DIO2 WILD-TYPE" 
    TCGA-55-5899     TCGA-55-6543     TCGA-55-6642     TCGA-55-6712 
"DIO2 WILD-TYPE" "DIO2 WILD-TYPE" "DIO2 WILD-TYPE" "DIO2 WILD-TYPE" 
    TCGA-64-1676     TCGA-64-1677     TCGA-64-1678     TCGA-64-1680 
"DIO2 WILD-TYPE" "DIO2 WILD-TYPE" "DIO2 WILD-TYPE" "DIO2 WILD-TYPE" 
    TCGA-64-5774     TCGA-64-5775     TCGA-64-5778     TCGA-64-5779 
"DIO2 WILD-TYPE" "DIO2 WILD-TYPE" "DIO2 WILD-TYPE" "DIO2 WILD-TYPE" 
    TCGA-64-5781     TCGA-64-5815     TCGA-67-3770     TCGA-67-3771 
"DIO2 WILD-TYPE" "DIO2 WILD-TYPE" "DIO2 WILD-TYPE" "DIO2 WILD-TYPE" 
    TCGA-67-3772     TCGA-67-3773     TCGA-67-3774     TCGA-67-6215 
"DIO2 WILD-TYPE" "DIO2 WILD-TYPE" "DIO2 WILD-TYPE" "DIO2 WILD-TYPE" 
    TCGA-67-6216     TCGA-67-6217     TCGA-71-6725     TCGA-73-4658 
"DIO2 WILD-TYPE" "DIO2 WILD-TYPE" "DIO2 WILD-TYPE" "DIO2 WILD-TYPE" 
    TCGA-73-4659     TCGA-73-4662     TCGA-73-4666     TCGA-73-4668 
"DIO2 WILD-TYPE" "DIO2 WILD-TYPE" "DIO2 WILD-TYPE" "DIO2 WILD-TYPE" 
    TCGA-73-4670     TCGA-73-4675     TCGA-73-4676     TCGA-73-4677 
  "DIO2 MUTATED" "DIO2 WILD-TYPE" "DIO2 WILD-TYPE" "DIO2 WILD-TYPE" 
    TCGA-91-6828     TCGA-91-6829     TCGA-91-6831     TCGA-91-6835 
"DIO2 WILD-TYPE" "DIO2 WILD-TYPE" "DIO2 WILD-TYPE" "DIO2 WILD-TYPE" 
    TCGA-91-6836 
"DIO2 WILD-TYPE" 
    TCGA-05-4249     TCGA-05-4250     TCGA-05-4382     TCGA-05-4384 
"DIO2 WILD-TYPE" "DIO2 WILD-TYPE"   "DIO2 MUTATED" "DIO2 WILD-TYPE" 
    TCGA-05-4390     TCGA-05-4396     TCGA-05-4397     TCGA-05-4398 
"DIO2 WILD-TYPE" "DIO2 WILD-TYPE" "DIO2 WILD-TYPE" "DIO2 WILD-TYPE" 
    TCGA-05-4402     TCGA-05-4405     TCGA-05-4415     TCGA-05-4417 
"DIO2 WILD-TYPE" "DIO2 WILD-TYPE" "DIO2 WILD-TYPE" "DIO2 WILD-TYPE" 
    TCGA-05-4418     TCGA-05-4420     TCGA-05-4424     TCGA-05-4426 
"DIO2 WILD-TYPE" "DIO2 WILD-TYPE" "DIO2 WILD-TYPE" "DIO2 WILD-TYPE" 
    TCGA-05-4427     TCGA-05-4430     TCGA-05-4432     TCGA-05-4433 
"DIO2 WILD-TYPE" "DIO2 WILD-TYPE" "DIO2 WILD-TYPE" "DIO2 WILD-TYPE" 
    TCGA-05-4434     TCGA-05-5420     TCGA-05-5423     TCGA-05-5425 
"DIO2 WILD-TYPE" "DIO2 WILD-TYPE" "DIO2 WILD-TYPE" "DIO2 WILD-TYPE" 
    TCGA-05-5429     TCGA-05-5715     TCGA-35-3615     TCGA-35-4122 
"DIO2 WILD-TYPE" "DIO2 WILD-TYPE" "DIO2 WILD-TYPE" "DIO2 WILD-TYPE" 
    TCGA-35-4123     TCGA-35-5375     TCGA-38-4625     TCGA-38-4626 
"DIO2 WILD-TYPE" "DIO2 WILD-TYPE" "DIO2 WILD-TYPE" "DIO2 WILD-TYPE" 
    TCGA-38-4627     TCGA-38-4628     TCGA-38-4629     TCGA-38-4630 
"DIO2 WILD-TYPE" "DIO2 WILD-TYPE" "DIO2 WILD-TYPE"   "DIO2 MUTATED" 
    TCGA-38-4631     TCGA-38-4632     TCGA-38-6178     TCGA-44-2655 
"DIO2 WILD-TYPE" "DIO2 WILD-TYPE" "DIO2 WILD-TYPE" "DIO2 WILD-TYPE" 
    TCGA-44-2656     TCGA-44-2657     TCGA-44-2659     TCGA-44-2661 
  "DIO2 MUTATED" "DIO2 WILD-TYPE" "DIO2 WILD-TYPE" "DIO2 WILD-TYPE" 
    TCGA-44-2662     TCGA-44-2665     TCGA-44-2666     TCGA-44-2668 
"DIO2 WILD-TYPE" "DIO2 WILD-TYPE" "DIO2 WILD-TYPE" "DIO2 WILD-TYPE" 
    TCGA-44-3396     TCGA-44-3398     TCGA-44-3918     TCGA-44-3919 
"DIO2 WILD-TYPE" "DIO2 WILD-TYPE"   "DIO2 MUTATED" "DIO2 WILD-TYPE" 
    TCGA-44-4112     TCGA-44-5643     TCGA-44-5645     TCGA-44-6144 
"DIO2 WILD-TYPE" "DIO2 WILD-TYPE" "DIO2 WILD-TYPE" "DIO2 WILD-TYPE" 
    TCGA-44-6145     TCGA-44-6146     TCGA-44-6147     TCGA-44-6148 
"DIO2 WILD-TYPE" "DIO2 WILD-TYPE" "DIO2 WILD-TYPE" "DIO2 WILD-TYPE" 
    TCGA-44-6774     TCGA-44-6775     TCGA-44-6776     TCGA-44-6777 
"DIO2 WILD-TYPE" "DIO2 WILD-TYPE"   "DIO2 MUTATED" "DIO2 WILD-TYPE" 
    TCGA-44-6778     TCGA-44-6779     TCGA-49-4486     TCGA-49-4487 
"DIO2 WILD-TYPE" "DIO2 WILD-TYPE" "DIO2 WILD-TYPE" "DIO2 WILD-TYPE" 
    TCGA-49-4488     TCGA-49-4490     TCGA-49-4494     TCGA-49-4501 
"DIO2 WILD-TYPE" "DIO2 WILD-TYPE" "DIO2 WILD-TYPE" "DIO2 WILD-TYPE" 
    TCGA-49-4505     TCGA-49-4506     TCGA-49-4507     TCGA-49-4510 
"DIO2 WILD-TYPE" "DIO2 WILD-TYPE" "DIO2 WILD-TYPE" "DIO2 WILD-TYPE" 
    TCGA-49-4512     TCGA-49-4514     TCGA-49-6742     TCGA-49-6743 
"DIO2 WILD-TYPE" "DIO2 WILD-TYPE" "DIO2 WILD-TYPE" "DIO2 WILD-TYPE" 
    TCGA-49-6744     TCGA-49-6745     TCGA-50-5044     TCGA-50-5045 
"DIO2 WILD-TYPE" "DIO2 WILD-TYPE" "DIO2 WILD-TYPE" "DIO2 WILD-TYPE" 
    TCGA-50-5049     TCGA-50-5051     TCGA-50-5055     TCGA-50-5066 
"DIO2 WILD-TYPE" "DIO2 WILD-TYPE" "DIO2 WILD-TYPE" "DIO2 WILD-TYPE" 
    TCGA-50-5068     TCGA-50-5072     TCGA-50-5930     TCGA-50-5931 
"DIO2 WILD-TYPE" "DIO2 WILD-TYPE" "DIO2 WILD-TYPE" "DIO2 WILD-TYPE" 
    TCGA-50-5932     TCGA-50-5933     TCGA-50-5935     TCGA-50-5936 
"DIO2 WILD-TYPE" "DIO2 WILD-TYPE" "DIO2 WILD-TYPE" "DIO2 WILD-TYPE" 
    TCGA-50-5939     TCGA-50-5941     TCGA-50-5942     TCGA-50-5944 
"DIO2 WILD-TYPE" "DIO2 WILD-TYPE" "DIO2 WILD-TYPE" "DIO2 WILD-TYPE" 
    TCGA-50-5946     TCGA-50-6590     TCGA-50-6591     TCGA-50-6592 
"DIO2 WILD-TYPE" "DIO2 WILD-TYPE" "DIO2 WILD-TYPE" "DIO2 WILD-TYPE" 
    TCGA-50-6593     TCGA-50-6594     TCGA-50-6595     TCGA-50-6597 
"DIO2 WILD-TYPE" "DIO2 WILD-TYPE" "DIO2 WILD-TYPE" "DIO2 WILD-TYPE" 
    TCGA-55-1592     TCGA-55-1594     TCGA-55-1595     TCGA-55-1596 
"DIO2 WILD-TYPE" "DIO2 WILD-TYPE" "DIO2 WILD-TYPE" "DIO2 WILD-TYPE" 
    TCGA-55-5899     TCGA-55-6543     TCGA-55-6642     TCGA-55-6712 
"DIO2 WILD-TYPE" "DIO2 WILD-TYPE" "DIO2 WILD-TYPE" "DIO2 WILD-TYPE" 
    TCGA-64-1676     TCGA-64-1677     TCGA-64-1678     TCGA-64-1680 
"DIO2 WILD-TYPE" "DIO2 WILD-TYPE" "DIO2 WILD-TYPE" "DIO2 WILD-TYPE" 
    TCGA-64-5774     TCGA-64-5775     TCGA-64-5778     TCGA-64-5779 
"DIO2 WILD-TYPE" "DIO2 WILD-TYPE" "DIO2 WILD-TYPE" "DIO2 WILD-TYPE" 
    TCGA-64-5781     TCGA-64-5815     TCGA-67-3770     TCGA-67-3771 
"DIO2 WILD-TYPE" "DIO2 WILD-TYPE" "DIO2 WILD-TYPE" "DIO2 WILD-TYPE" 
    TCGA-67-3772     TCGA-67-3773     TCGA-67-3774     TCGA-67-6215 
"DIO2 WILD-TYPE" "DIO2 WILD-TYPE" "DIO2 WILD-TYPE" "DIO2 WILD-TYPE" 
    TCGA-67-6216     TCGA-67-6217     TCGA-71-6725     TCGA-73-4658 
"DIO2 WILD-TYPE" "DIO2 WILD-TYPE" "DIO2 WILD-TYPE" "DIO2 WILD-TYPE" 
    TCGA-73-4659     TCGA-73-4662     TCGA-73-4666     TCGA-73-4668 
"DIO2 WILD-TYPE" "DIO2 WILD-TYPE" "DIO2 WILD-TYPE" "DIO2 WILD-TYPE" 
    TCGA-73-4670     TCGA-73-4675     TCGA-73-4676     TCGA-73-4677 
  "DIO2 MUTATED" "DIO2 WILD-TYPE" "DIO2 WILD-TYPE" "DIO2 WILD-TYPE" 
    TCGA-91-6828     TCGA-91-6829     TCGA-91-6831     TCGA-91-6835 
"DIO2 WILD-TYPE" "DIO2 WILD-TYPE" "DIO2 WILD-TYPE" "DIO2 WILD-TYPE" 
    TCGA-91-6836 
"DIO2 WILD-TYPE" 
[1] "hr=" "2.5"
D134V2, continuous
D134V3, binary
[1] "tbl2"
                cls
clus             [,1] [,2]
  DIO2 MUTATED      4    2
  DIO2 WILD-TYPE   89   77
        clus
vv       DIO2 MUTATED DIO2 WILD-TYPE
  FEMALE            4             89
  MALE              2             77
D134V4, continuous
D134V5, multiclass
D134V6, multiclass
    clus
vv   DIO2 MUTATED DIO2 WILD-TYPE
  T1            2             39
  T2            4            104
  T3            0             14
  T4            0              8
D134V7, multiclass
       clus
vv      DIO2 MUTATED DIO2 WILD-TYPE
  N0               6             89
  N1               0             37
  N2+N3            0             35
D134V8, multiclass
    clus
vv   DIO2 MUTATED DIO2 WILD-TYPE
  M0            3            134
  M1            1              8
  MX            1             21
D134V9, multiclass
     clus
vv    DIO2 MUTATED DIO2 WILD-TYPE
  I              5             83
  II             0             33
  III            0             39
  IV             1              8
D134V10, binary
[1] "tbl2"
                cls
clus             [,1] [,2]
  DIO2 MUTATED      0    6
  DIO2 WILD-TYPE   16  150
     clus
vv    DIO2 MUTATED DIO2 WILD-TYPE
  NO             0             16
  YES            6            150
D134V11, continuous
D134V12, continuous
D134V13, multiclass
                                             clus
vv                                            DIO2 MUTATED DIO2 WILD-TYPE
  CURRENT REFORMED SMOKER FOR < OR = 15 YEARS            4             58
  CURRENT REFORMED SMOKER FOR > 15 YEARS                 1             45
  CURRENT SMOKER                                         0             28
  LIFELONG NON-SMOKER                                    1             23
D134V14, continuous

Clustering(135) Variable = NELL1 MUTATION ANALYSIS
D135V1, survival
                 sevent
clus2              0  1
  NELL1 MUTATED   10  2
  NELL1 WILD-TYPE 89 48
  NELL1 MUTATED NELL1 WILD-TYPE 
             12             137 
  NELL1 MUTATED NELL1 WILD-TYPE 
              2              48 
$`NELL1 MUTATED`
TCGA-05-4249 TCGA-05-4390 TCGA-38-4626 TCGA-38-4632 TCGA-44-4112 TCGA-50-5066 
       38.07        37.02        85.32        44.61         4.60         9.76 
TCGA-50-5941 TCGA-50-6594 TCGA-55-1596 TCGA-64-1676 TCGA-67-6217 TCGA-73-4670 
        9.37        12.16        45.17        56.81        13.87         0.46 

$`NELL1 WILD-TYPE`
TCGA-05-4250 TCGA-05-4382 TCGA-05-4384 TCGA-05-4396 TCGA-05-4397 TCGA-05-4398 
        3.98        19.92        14.01         9.96        24.03        47.05 
TCGA-05-4402 TCGA-05-4405 TCGA-05-4415 TCGA-05-4417 TCGA-05-4418 TCGA-05-4420 
        8.02        20.05         2.96        14.93         8.98        29.95 
TCGA-05-4424 TCGA-05-4426 TCGA-05-4427 TCGA-05-4430 TCGA-05-4432 TCGA-05-4433 
       30.02        26.01        26.01        25.02        25.02        24.00 
TCGA-05-4434 TCGA-05-5420 TCGA-05-5423 TCGA-05-5425 TCGA-05-5429 TCGA-05-5715 
       15.02         1.02         4.96         2.96         0.99         2.04 
TCGA-35-3615 TCGA-35-4122 TCGA-35-4123 TCGA-35-5375 TCGA-38-4625 TCGA-38-4627 
        0.46         7.36         5.95         8.68        47.61        37.71 
TCGA-38-4628 TCGA-38-4629 TCGA-38-4630 TCGA-38-4631 TCGA-38-6178 TCGA-44-2655 
       49.02        28.37        35.28        11.64         5.19        18.87 
TCGA-44-2656 TCGA-44-2657 TCGA-44-2659 TCGA-44-2661 TCGA-44-2662 TCGA-44-2665 
       19.10        13.15        17.39         3.39        15.78        13.15 
TCGA-44-2666 TCGA-44-2668 TCGA-44-3396 TCGA-44-3398 TCGA-44-3918 TCGA-44-3919 
        3.19         8.09        10.22         8.32         6.44         6.21 
TCGA-44-5643 TCGA-44-5645 TCGA-44-6144 TCGA-44-6145 TCGA-44-6146 TCGA-44-6147 
        3.48         6.84         0.30         3.35         9.93         7.76 
TCGA-44-6148 TCGA-44-6774 TCGA-44-6775 TCGA-44-6776 TCGA-44-6777 TCGA-44-6778 
        3.12         5.42         2.70        63.72        32.45        36.49 
TCGA-44-6779 TCGA-49-4486 TCGA-49-4487 TCGA-49-4488 TCGA-49-4490 TCGA-49-4494 
       16.41        76.21        28.11        28.57        12.66        35.54 
TCGA-49-4501 TCGA-49-4505 TCGA-49-4506 TCGA-49-4507 TCGA-49-4510 TCGA-49-4512 
       46.72        14.07        32.84         8.81        29.46        29.75 
TCGA-49-4514 TCGA-49-6742 TCGA-49-6743 TCGA-49-6744 TCGA-49-6745 TCGA-50-5044 
       43.20        15.02        12.13        12.99         4.93        20.48 
TCGA-50-5045 TCGA-50-5049 TCGA-50-5051 TCGA-50-5055 TCGA-50-5068 TCGA-50-5072 
       71.47        48.82        14.96        25.81        49.28         8.05 
TCGA-50-5930 TCGA-50-5931 TCGA-50-5932 TCGA-50-5933 TCGA-50-5935 TCGA-50-5936 
        9.27         8.78        35.87        77.88        21.47         8.45 
TCGA-50-5939 TCGA-50-5942 TCGA-50-5944 TCGA-50-5946 TCGA-50-6590 TCGA-50-6591 
       15.12         4.44        12.26        11.47        42.31         3.88 
TCGA-50-6592 TCGA-50-6593 TCGA-50-6595 TCGA-50-6597 TCGA-55-1592 TCGA-55-1594 
       25.51        11.05         6.21        33.37        23.05        38.73 
TCGA-55-1595 TCGA-55-5899 TCGA-55-6543 TCGA-55-6642 TCGA-55-6712 TCGA-64-1677 
       48.62         2.86         0.07        32.61         0.79        20.65 
TCGA-64-1678 TCGA-64-1680 TCGA-64-5774 TCGA-64-5775 TCGA-64-5778 TCGA-64-5779 
       39.09        37.02        83.84         0.10        30.44        16.67 
TCGA-64-5781 TCGA-64-5815 TCGA-67-3770 TCGA-67-3771 TCGA-67-3772 TCGA-67-3773 
       39.52         7.33         0.99         1.97         0.59         2.04 
TCGA-67-3774 TCGA-67-6215 TCGA-67-6216 TCGA-71-6725 TCGA-73-4658 TCGA-73-4659 
        0.59         0.89         0.69         2.01        52.57        23.38 
TCGA-73-4662 TCGA-73-4666 TCGA-73-4668 TCGA-73-4675 TCGA-73-4676 TCGA-73-4677 
       29.95        20.28        15.35         1.32         4.01         1.25 
TCGA-91-6828 TCGA-91-6829 TCGA-91-6831 TCGA-91-6835 TCGA-91-6836 
        1.22        41.33         1.28         1.15         0.36 

  NELL1 MUTATED NELL1 WILD-TYPE 
           0.46            0.07 
  NELL1 MUTATED NELL1 WILD-TYPE 
          85.32           83.84 
  NELL1 MUTATED NELL1 WILD-TYPE 
         25.445          13.150 
[1] "0.5 - 85.3 (25.4)" "0.1 - 83.8 (13.2)"
     TCGA-05-4249      TCGA-05-4250      TCGA-05-4382      TCGA-05-4384 
  "NELL1 MUTATED" "NELL1 WILD-TYPE" "NELL1 WILD-TYPE" "NELL1 WILD-TYPE" 
     TCGA-05-4390      TCGA-05-4396      TCGA-05-4397      TCGA-05-4398 
  "NELL1 MUTATED" "NELL1 WILD-TYPE" "NELL1 WILD-TYPE" "NELL1 WILD-TYPE" 
     TCGA-05-4402      TCGA-05-4405      TCGA-05-4415      TCGA-05-4417 
"NELL1 WILD-TYPE" "NELL1 WILD-TYPE" "NELL1 WILD-TYPE" "NELL1 WILD-TYPE" 
     TCGA-05-4418      TCGA-05-4420      TCGA-05-4424      TCGA-05-4426 
"NELL1 WILD-TYPE" "NELL1 WILD-TYPE" "NELL1 WILD-TYPE" "NELL1 WILD-TYPE" 
     TCGA-05-4427      TCGA-05-4430      TCGA-05-4432      TCGA-05-4433 
"NELL1 WILD-TYPE" "NELL1 WILD-TYPE" "NELL1 WILD-TYPE" "NELL1 WILD-TYPE" 
     TCGA-05-4434      TCGA-05-5420      TCGA-05-5423      TCGA-05-5425 
"NELL1 WILD-TYPE" "NELL1 WILD-TYPE" "NELL1 WILD-TYPE" "NELL1 WILD-TYPE" 
     TCGA-05-5429      TCGA-05-5715      TCGA-35-3615      TCGA-35-4122 
"NELL1 WILD-TYPE" "NELL1 WILD-TYPE" "NELL1 WILD-TYPE" "NELL1 WILD-TYPE" 
     TCGA-35-4123      TCGA-35-5375      TCGA-38-4625      TCGA-38-4626 
"NELL1 WILD-TYPE" "NELL1 WILD-TYPE" "NELL1 WILD-TYPE"   "NELL1 MUTATED" 
     TCGA-38-4627      TCGA-38-4628      TCGA-38-4629      TCGA-38-4630 
"NELL1 WILD-TYPE" "NELL1 WILD-TYPE" "NELL1 WILD-TYPE" "NELL1 WILD-TYPE" 
     TCGA-38-4631      TCGA-38-4632      TCGA-38-6178      TCGA-44-2655 
"NELL1 WILD-TYPE"   "NELL1 MUTATED" "NELL1 WILD-TYPE" "NELL1 WILD-TYPE" 
     TCGA-44-2656      TCGA-44-2657      TCGA-44-2659      TCGA-44-2661 
"NELL1 WILD-TYPE" "NELL1 WILD-TYPE" "NELL1 WILD-TYPE" "NELL1 WILD-TYPE" 
     TCGA-44-2662      TCGA-44-2665      TCGA-44-2666      TCGA-44-2668 
"NELL1 WILD-TYPE" "NELL1 WILD-TYPE" "NELL1 WILD-TYPE" "NELL1 WILD-TYPE" 
     TCGA-44-3396      TCGA-44-3398      TCGA-44-3918      TCGA-44-3919 
"NELL1 WILD-TYPE" "NELL1 WILD-TYPE" "NELL1 WILD-TYPE" "NELL1 WILD-TYPE" 
     TCGA-44-4112      TCGA-44-5643      TCGA-44-5645      TCGA-44-6144 
  "NELL1 MUTATED" "NELL1 WILD-TYPE" "NELL1 WILD-TYPE" "NELL1 WILD-TYPE" 
     TCGA-44-6145      TCGA-44-6146      TCGA-44-6147      TCGA-44-6148 
"NELL1 WILD-TYPE" "NELL1 WILD-TYPE" "NELL1 WILD-TYPE" "NELL1 WILD-TYPE" 
     TCGA-44-6774      TCGA-44-6775      TCGA-44-6776      TCGA-44-6777 
"NELL1 WILD-TYPE" "NELL1 WILD-TYPE" "NELL1 WILD-TYPE" "NELL1 WILD-TYPE" 
     TCGA-44-6778      TCGA-44-6779      TCGA-49-4486      TCGA-49-4487 
"NELL1 WILD-TYPE" "NELL1 WILD-TYPE" "NELL1 WILD-TYPE" "NELL1 WILD-TYPE" 
     TCGA-49-4488      TCGA-49-4490      TCGA-49-4494      TCGA-49-4501 
"NELL1 WILD-TYPE" "NELL1 WILD-TYPE" "NELL1 WILD-TYPE" "NELL1 WILD-TYPE" 
     TCGA-49-4505      TCGA-49-4506      TCGA-49-4507      TCGA-49-4510 
"NELL1 WILD-TYPE" "NELL1 WILD-TYPE" "NELL1 WILD-TYPE" "NELL1 WILD-TYPE" 
     TCGA-49-4512      TCGA-49-4514      TCGA-49-6742      TCGA-49-6743 
"NELL1 WILD-TYPE" "NELL1 WILD-TYPE" "NELL1 WILD-TYPE" "NELL1 WILD-TYPE" 
     TCGA-49-6744      TCGA-49-6745      TCGA-50-5044      TCGA-50-5045 
"NELL1 WILD-TYPE" "NELL1 WILD-TYPE" "NELL1 WILD-TYPE" "NELL1 WILD-TYPE" 
     TCGA-50-5049      TCGA-50-5051      TCGA-50-5055      TCGA-50-5066 
"NELL1 WILD-TYPE" "NELL1 WILD-TYPE" "NELL1 WILD-TYPE"   "NELL1 MUTATED" 
     TCGA-50-5068      TCGA-50-5072      TCGA-50-5930      TCGA-50-5931 
"NELL1 WILD-TYPE" "NELL1 WILD-TYPE" "NELL1 WILD-TYPE" "NELL1 WILD-TYPE" 
     TCGA-50-5932      TCGA-50-5933      TCGA-50-5935      TCGA-50-5936 
"NELL1 WILD-TYPE" "NELL1 WILD-TYPE" "NELL1 WILD-TYPE" "NELL1 WILD-TYPE" 
     TCGA-50-5939      TCGA-50-5941      TCGA-50-5942      TCGA-50-5944 
"NELL1 WILD-TYPE"   "NELL1 MUTATED" "NELL1 WILD-TYPE" "NELL1 WILD-TYPE" 
     TCGA-50-5946      TCGA-50-6590      TCGA-50-6591      TCGA-50-6592 
"NELL1 WILD-TYPE" "NELL1 WILD-TYPE" "NELL1 WILD-TYPE" "NELL1 WILD-TYPE" 
     TCGA-50-6593      TCGA-50-6594      TCGA-50-6595      TCGA-50-6597 
"NELL1 WILD-TYPE"   "NELL1 MUTATED" "NELL1 WILD-TYPE" "NELL1 WILD-TYPE" 
     TCGA-55-1592      TCGA-55-1594      TCGA-55-1595      TCGA-55-1596 
"NELL1 WILD-TYPE" "NELL1 WILD-TYPE" "NELL1 WILD-TYPE"   "NELL1 MUTATED" 
     TCGA-55-5899      TCGA-55-6543      TCGA-55-6642      TCGA-55-6712 
"NELL1 WILD-TYPE" "NELL1 WILD-TYPE" "NELL1 WILD-TYPE" "NELL1 WILD-TYPE" 
     TCGA-64-1676      TCGA-64-1677      TCGA-64-1678      TCGA-64-1680 
  "NELL1 MUTATED" "NELL1 WILD-TYPE" "NELL1 WILD-TYPE" "NELL1 WILD-TYPE" 
     TCGA-64-5774      TCGA-64-5775      TCGA-64-5778      TCGA-64-5779 
"NELL1 WILD-TYPE" "NELL1 WILD-TYPE" "NELL1 WILD-TYPE" "NELL1 WILD-TYPE" 
     TCGA-64-5781      TCGA-64-5815      TCGA-67-3770      TCGA-67-3771 
"NELL1 WILD-TYPE" "NELL1 WILD-TYPE" "NELL1 WILD-TYPE" "NELL1 WILD-TYPE" 
     TCGA-67-3772      TCGA-67-3773      TCGA-67-3774      TCGA-67-6215 
"NELL1 WILD-TYPE" "NELL1 WILD-TYPE" "NELL1 WILD-TYPE" "NELL1 WILD-TYPE" 
     TCGA-67-6216      TCGA-67-6217      TCGA-71-6725      TCGA-73-4658 
"NELL1 WILD-TYPE"   "NELL1 MUTATED" "NELL1 WILD-TYPE" "NELL1 WILD-TYPE" 
     TCGA-73-4659      TCGA-73-4662      TCGA-73-4666      TCGA-73-4668 
"NELL1 WILD-TYPE" "NELL1 WILD-TYPE" "NELL1 WILD-TYPE" "NELL1 WILD-TYPE" 
     TCGA-73-4670      TCGA-73-4675      TCGA-73-4676      TCGA-73-4677 
  "NELL1 MUTATED" "NELL1 WILD-TYPE" "NELL1 WILD-TYPE" "NELL1 WILD-TYPE" 
     TCGA-91-6828      TCGA-91-6829      TCGA-91-6831      TCGA-91-6835 
"NELL1 WILD-TYPE" "NELL1 WILD-TYPE" "NELL1 WILD-TYPE" "NELL1 WILD-TYPE" 
     TCGA-91-6836 
"NELL1 WILD-TYPE" 
     TCGA-05-4249      TCGA-05-4250      TCGA-05-4382      TCGA-05-4384 
  "NELL1 MUTATED" "NELL1 WILD-TYPE" "NELL1 WILD-TYPE" "NELL1 WILD-TYPE" 
     TCGA-05-4390      TCGA-05-4396      TCGA-05-4397      TCGA-05-4398 
  "NELL1 MUTATED" "NELL1 WILD-TYPE" "NELL1 WILD-TYPE" "NELL1 WILD-TYPE" 
     TCGA-05-4402      TCGA-05-4405      TCGA-05-4415      TCGA-05-4417 
"NELL1 WILD-TYPE" "NELL1 WILD-TYPE" "NELL1 WILD-TYPE" "NELL1 WILD-TYPE" 
     TCGA-05-4418      TCGA-05-4420      TCGA-05-4424      TCGA-05-4426 
"NELL1 WILD-TYPE" "NELL1 WILD-TYPE" "NELL1 WILD-TYPE" "NELL1 WILD-TYPE" 
     TCGA-05-4427      TCGA-05-4430      TCGA-05-4432      TCGA-05-4433 
"NELL1 WILD-TYPE" "NELL1 WILD-TYPE" "NELL1 WILD-TYPE" "NELL1 WILD-TYPE" 
     TCGA-05-4434      TCGA-05-5420      TCGA-05-5423      TCGA-05-5425 
"NELL1 WILD-TYPE" "NELL1 WILD-TYPE" "NELL1 WILD-TYPE" "NELL1 WILD-TYPE" 
     TCGA-05-5429      TCGA-05-5715      TCGA-35-3615      TCGA-35-4122 
"NELL1 WILD-TYPE" "NELL1 WILD-TYPE" "NELL1 WILD-TYPE" "NELL1 WILD-TYPE" 
     TCGA-35-4123      TCGA-35-5375      TCGA-38-4625      TCGA-38-4626 
"NELL1 WILD-TYPE" "NELL1 WILD-TYPE" "NELL1 WILD-TYPE"   "NELL1 MUTATED" 
     TCGA-38-4627      TCGA-38-4628      TCGA-38-4629      TCGA-38-4630 
"NELL1 WILD-TYPE" "NELL1 WILD-TYPE" "NELL1 WILD-TYPE" "NELL1 WILD-TYPE" 
     TCGA-38-4631      TCGA-38-4632      TCGA-38-6178      TCGA-44-2655 
"NELL1 WILD-TYPE"   "NELL1 MUTATED" "NELL1 WILD-TYPE" "NELL1 WILD-TYPE" 
     TCGA-44-2656      TCGA-44-2657      TCGA-44-2659      TCGA-44-2661 
"NELL1 WILD-TYPE" "NELL1 WILD-TYPE" "NELL1 WILD-TYPE" "NELL1 WILD-TYPE" 
     TCGA-44-2662      TCGA-44-2665      TCGA-44-2666      TCGA-44-2668 
"NELL1 WILD-TYPE" "NELL1 WILD-TYPE" "NELL1 WILD-TYPE" "NELL1 WILD-TYPE" 
     TCGA-44-3396      TCGA-44-3398      TCGA-44-3918      TCGA-44-3919 
"NELL1 WILD-TYPE" "NELL1 WILD-TYPE" "NELL1 WILD-TYPE" "NELL1 WILD-TYPE" 
     TCGA-44-4112      TCGA-44-5643      TCGA-44-5645      TCGA-44-6144 
  "NELL1 MUTATED" "NELL1 WILD-TYPE" "NELL1 WILD-TYPE" "NELL1 WILD-TYPE" 
     TCGA-44-6145      TCGA-44-6146      TCGA-44-6147      TCGA-44-6148 
"NELL1 WILD-TYPE" "NELL1 WILD-TYPE" "NELL1 WILD-TYPE" "NELL1 WILD-TYPE" 
     TCGA-44-6774      TCGA-44-6775      TCGA-44-6776      TCGA-44-6777 
"NELL1 WILD-TYPE" "NELL1 WILD-TYPE" "NELL1 WILD-TYPE" "NELL1 WILD-TYPE" 
     TCGA-44-6778      TCGA-44-6779      TCGA-49-4486      TCGA-49-4487 
"NELL1 WILD-TYPE" "NELL1 WILD-TYPE" "NELL1 WILD-TYPE" "NELL1 WILD-TYPE" 
     TCGA-49-4488      TCGA-49-4490      TCGA-49-4494      TCGA-49-4501 
"NELL1 WILD-TYPE" "NELL1 WILD-TYPE" "NELL1 WILD-TYPE" "NELL1 WILD-TYPE" 
     TCGA-49-4505      TCGA-49-4506      TCGA-49-4507      TCGA-49-4510 
"NELL1 WILD-TYPE" "NELL1 WILD-TYPE" "NELL1 WILD-TYPE" "NELL1 WILD-TYPE" 
     TCGA-49-4512      TCGA-49-4514      TCGA-49-6742      TCGA-49-6743 
"NELL1 WILD-TYPE" "NELL1 WILD-TYPE" "NELL1 WILD-TYPE" "NELL1 WILD-TYPE" 
     TCGA-49-6744      TCGA-49-6745      TCGA-50-5044      TCGA-50-5045 
"NELL1 WILD-TYPE" "NELL1 WILD-TYPE" "NELL1 WILD-TYPE" "NELL1 WILD-TYPE" 
     TCGA-50-5049      TCGA-50-5051      TCGA-50-5055      TCGA-50-5066 
"NELL1 WILD-TYPE" "NELL1 WILD-TYPE" "NELL1 WILD-TYPE"   "NELL1 MUTATED" 
     TCGA-50-5068      TCGA-50-5072      TCGA-50-5930      TCGA-50-5931 
"NELL1 WILD-TYPE" "NELL1 WILD-TYPE" "NELL1 WILD-TYPE" "NELL1 WILD-TYPE" 
     TCGA-50-5932      TCGA-50-5933      TCGA-50-5935      TCGA-50-5936 
"NELL1 WILD-TYPE" "NELL1 WILD-TYPE" "NELL1 WILD-TYPE" "NELL1 WILD-TYPE" 
     TCGA-50-5939      TCGA-50-5941      TCGA-50-5942      TCGA-50-5944 
"NELL1 WILD-TYPE"   "NELL1 MUTATED" "NELL1 WILD-TYPE" "NELL1 WILD-TYPE" 
     TCGA-50-5946      TCGA-50-6590      TCGA-50-6591      TCGA-50-6592 
"NELL1 WILD-TYPE" "NELL1 WILD-TYPE" "NELL1 WILD-TYPE" "NELL1 WILD-TYPE" 
     TCGA-50-6593      TCGA-50-6594      TCGA-50-6595      TCGA-50-6597 
"NELL1 WILD-TYPE"   "NELL1 MUTATED" "NELL1 WILD-TYPE" "NELL1 WILD-TYPE" 
     TCGA-55-1592      TCGA-55-1594      TCGA-55-1595      TCGA-55-1596 
"NELL1 WILD-TYPE" "NELL1 WILD-TYPE" "NELL1 WILD-TYPE"   "NELL1 MUTATED" 
     TCGA-55-5899      TCGA-55-6543      TCGA-55-6642      TCGA-55-6712 
"NELL1 WILD-TYPE" "NELL1 WILD-TYPE" "NELL1 WILD-TYPE" "NELL1 WILD-TYPE" 
     TCGA-64-1676      TCGA-64-1677      TCGA-64-1678      TCGA-64-1680 
  "NELL1 MUTATED" "NELL1 WILD-TYPE" "NELL1 WILD-TYPE" "NELL1 WILD-TYPE" 
     TCGA-64-5774      TCGA-64-5775      TCGA-64-5778      TCGA-64-5779 
"NELL1 WILD-TYPE" "NELL1 WILD-TYPE" "NELL1 WILD-TYPE" "NELL1 WILD-TYPE" 
     TCGA-64-5781      TCGA-64-5815      TCGA-67-3770      TCGA-67-3771 
"NELL1 WILD-TYPE" "NELL1 WILD-TYPE" "NELL1 WILD-TYPE" "NELL1 WILD-TYPE" 
     TCGA-67-3772      TCGA-67-3773      TCGA-67-3774      TCGA-67-6215 
"NELL1 WILD-TYPE" "NELL1 WILD-TYPE" "NELL1 WILD-TYPE" "NELL1 WILD-TYPE" 
     TCGA-67-6216      TCGA-67-6217      TCGA-71-6725      TCGA-73-4658 
"NELL1 WILD-TYPE"   "NELL1 MUTATED" "NELL1 WILD-TYPE" "NELL1 WILD-TYPE" 
     TCGA-73-4659      TCGA-73-4662      TCGA-73-4666      TCGA-73-4668 
"NELL1 WILD-TYPE" "NELL1 WILD-TYPE" "NELL1 WILD-TYPE" "NELL1 WILD-TYPE" 
     TCGA-73-4670      TCGA-73-4675      TCGA-73-4676      TCGA-73-4677 
  "NELL1 MUTATED" "NELL1 WILD-TYPE" "NELL1 WILD-TYPE" "NELL1 WILD-TYPE" 
     TCGA-91-6828      TCGA-91-6829      TCGA-91-6831      TCGA-91-6835 
"NELL1 WILD-TYPE" "NELL1 WILD-TYPE" "NELL1 WILD-TYPE" "NELL1 WILD-TYPE" 
     TCGA-91-6836 
"NELL1 WILD-TYPE" 
     TCGA-05-4249      TCGA-05-4250      TCGA-05-4382      TCGA-05-4384 
  "NELL1 MUTATED" "NELL1 WILD-TYPE" "NELL1 WILD-TYPE" "NELL1 WILD-TYPE" 
     TCGA-05-4390      TCGA-05-4396      TCGA-05-4397      TCGA-05-4398 
  "NELL1 MUTATED" "NELL1 WILD-TYPE" "NELL1 WILD-TYPE" "NELL1 WILD-TYPE" 
     TCGA-05-4402      TCGA-05-4405      TCGA-05-4415      TCGA-05-4417 
"NELL1 WILD-TYPE" "NELL1 WILD-TYPE" "NELL1 WILD-TYPE" "NELL1 WILD-TYPE" 
     TCGA-05-4418      TCGA-05-4420      TCGA-05-4424      TCGA-05-4426 
"NELL1 WILD-TYPE" "NELL1 WILD-TYPE" "NELL1 WILD-TYPE" "NELL1 WILD-TYPE" 
     TCGA-05-4427      TCGA-05-4430      TCGA-05-4432      TCGA-05-4433 
"NELL1 WILD-TYPE" "NELL1 WILD-TYPE" "NELL1 WILD-TYPE" "NELL1 WILD-TYPE" 
     TCGA-05-4434      TCGA-05-5420      TCGA-05-5423      TCGA-05-5425 
"NELL1 WILD-TYPE" "NELL1 WILD-TYPE" "NELL1 WILD-TYPE" "NELL1 WILD-TYPE" 
     TCGA-05-5429      TCGA-05-5715      TCGA-35-3615      TCGA-35-4122 
"NELL1 WILD-TYPE" "NELL1 WILD-TYPE" "NELL1 WILD-TYPE" "NELL1 WILD-TYPE" 
     TCGA-35-4123      TCGA-35-5375      TCGA-38-4625      TCGA-38-4626 
"NELL1 WILD-TYPE" "NELL1 WILD-TYPE" "NELL1 WILD-TYPE"   "NELL1 MUTATED" 
     TCGA-38-4627      TCGA-38-4628      TCGA-38-4629      TCGA-38-4630 
"NELL1 WILD-TYPE" "NELL1 WILD-TYPE" "NELL1 WILD-TYPE" "NELL1 WILD-TYPE" 
     TCGA-38-4631      TCGA-38-4632      TCGA-38-6178      TCGA-44-2655 
"NELL1 WILD-TYPE"   "NELL1 MUTATED" "NELL1 WILD-TYPE" "NELL1 WILD-TYPE" 
     TCGA-44-2656      TCGA-44-2657      TCGA-44-2659      TCGA-44-2661 
"NELL1 WILD-TYPE" "NELL1 WILD-TYPE" "NELL1 WILD-TYPE" "NELL1 WILD-TYPE" 
     TCGA-44-2662      TCGA-44-2665      TCGA-44-2666      TCGA-44-2668 
"NELL1 WILD-TYPE" "NELL1 WILD-TYPE" "NELL1 WILD-TYPE" "NELL1 WILD-TYPE" 
     TCGA-44-3396      TCGA-44-3398      TCGA-44-3918      TCGA-44-3919 
"NELL1 WILD-TYPE" "NELL1 WILD-TYPE" "NELL1 WILD-TYPE" "NELL1 WILD-TYPE" 
     TCGA-44-4112      TCGA-44-5643      TCGA-44-5645      TCGA-44-6144 
  "NELL1 MUTATED" "NELL1 WILD-TYPE" "NELL1 WILD-TYPE" "NELL1 WILD-TYPE" 
     TCGA-44-6145      TCGA-44-6146      TCGA-44-6147      TCGA-44-6148 
"NELL1 WILD-TYPE" "NELL1 WILD-TYPE" "NELL1 WILD-TYPE" "NELL1 WILD-TYPE" 
     TCGA-44-6774      TCGA-44-6775      TCGA-44-6776      TCGA-44-6777 
"NELL1 WILD-TYPE" "NELL1 WILD-TYPE" "NELL1 WILD-TYPE" "NELL1 WILD-TYPE" 
     TCGA-44-6778      TCGA-44-6779      TCGA-49-4486      TCGA-49-4487 
"NELL1 WILD-TYPE" "NELL1 WILD-TYPE" "NELL1 WILD-TYPE" "NELL1 WILD-TYPE" 
     TCGA-49-4488      TCGA-49-4490      TCGA-49-4494      TCGA-49-4501 
"NELL1 WILD-TYPE" "NELL1 WILD-TYPE" "NELL1 WILD-TYPE" "NELL1 WILD-TYPE" 
     TCGA-49-4505      TCGA-49-4506      TCGA-49-4507      TCGA-49-4510 
"NELL1 WILD-TYPE" "NELL1 WILD-TYPE" "NELL1 WILD-TYPE" "NELL1 WILD-TYPE" 
     TCGA-49-4512      TCGA-49-4514      TCGA-49-6742      TCGA-49-6743 
"NELL1 WILD-TYPE" "NELL1 WILD-TYPE" "NELL1 WILD-TYPE" "NELL1 WILD-TYPE" 
     TCGA-49-6744      TCGA-49-6745      TCGA-50-5044      TCGA-50-5045 
"NELL1 WILD-TYPE" "NELL1 WILD-TYPE" "NELL1 WILD-TYPE" "NELL1 WILD-TYPE" 
     TCGA-50-5049      TCGA-50-5051      TCGA-50-5055      TCGA-50-5066 
"NELL1 WILD-TYPE" "NELL1 WILD-TYPE" "NELL1 WILD-TYPE"   "NELL1 MUTATED" 
     TCGA-50-5068      TCGA-50-5072      TCGA-50-5930      TCGA-50-5931 
"NELL1 WILD-TYPE" "NELL1 WILD-TYPE" "NELL1 WILD-TYPE" "NELL1 WILD-TYPE" 
     TCGA-50-5932      TCGA-50-5933      TCGA-50-5935      TCGA-50-5936 
"NELL1 WILD-TYPE" "NELL1 WILD-TYPE" "NELL1 WILD-TYPE" "NELL1 WILD-TYPE" 
     TCGA-50-5939      TCGA-50-5941      TCGA-50-5942      TCGA-50-5944 
"NELL1 WILD-TYPE"   "NELL1 MUTATED" "NELL1 WILD-TYPE" "NELL1 WILD-TYPE" 
     TCGA-50-5946      TCGA-50-6590      TCGA-50-6591      TCGA-50-6592 
"NELL1 WILD-TYPE" "NELL1 WILD-TYPE" "NELL1 WILD-TYPE" "NELL1 WILD-TYPE" 
     TCGA-50-6593      TCGA-50-6594      TCGA-50-6595      TCGA-50-6597 
"NELL1 WILD-TYPE"   "NELL1 MUTATED" "NELL1 WILD-TYPE" "NELL1 WILD-TYPE" 
     TCGA-55-1592      TCGA-55-1594      TCGA-55-1595      TCGA-55-1596 
"NELL1 WILD-TYPE" "NELL1 WILD-TYPE" "NELL1 WILD-TYPE"   "NELL1 MUTATED" 
     TCGA-55-5899      TCGA-55-6543      TCGA-55-6642      TCGA-55-6712 
"NELL1 WILD-TYPE" "NELL1 WILD-TYPE" "NELL1 WILD-TYPE" "NELL1 WILD-TYPE" 
     TCGA-64-1676      TCGA-64-1677      TCGA-64-1678      TCGA-64-1680 
  "NELL1 MUTATED" "NELL1 WILD-TYPE" "NELL1 WILD-TYPE" "NELL1 WILD-TYPE" 
     TCGA-64-5774      TCGA-64-5775      TCGA-64-5778      TCGA-64-5779 
"NELL1 WILD-TYPE" "NELL1 WILD-TYPE" "NELL1 WILD-TYPE" "NELL1 WILD-TYPE" 
     TCGA-64-5781      TCGA-64-5815      TCGA-67-3770      TCGA-67-3771 
"NELL1 WILD-TYPE" "NELL1 WILD-TYPE" "NELL1 WILD-TYPE" "NELL1 WILD-TYPE" 
     TCGA-67-3772      TCGA-67-3773      TCGA-67-3774      TCGA-67-6215 
"NELL1 WILD-TYPE" "NELL1 WILD-TYPE" "NELL1 WILD-TYPE" "NELL1 WILD-TYPE" 
     TCGA-67-6216      TCGA-67-6217      TCGA-71-6725      TCGA-73-4658 
"NELL1 WILD-TYPE"   "NELL1 MUTATED" "NELL1 WILD-TYPE" "NELL1 WILD-TYPE" 
     TCGA-73-4659      TCGA-73-4662      TCGA-73-4666      TCGA-73-4668 
"NELL1 WILD-TYPE" "NELL1 WILD-TYPE" "NELL1 WILD-TYPE" "NELL1 WILD-TYPE" 
     TCGA-73-4670      TCGA-73-4675      TCGA-73-4676      TCGA-73-4677 
  "NELL1 MUTATED" "NELL1 WILD-TYPE" "NELL1 WILD-TYPE" "NELL1 WILD-TYPE" 
     TCGA-91-6828      TCGA-91-6829      TCGA-91-6831      TCGA-91-6835 
"NELL1 WILD-TYPE" "NELL1 WILD-TYPE" "NELL1 WILD-TYPE" "NELL1 WILD-TYPE" 
     TCGA-91-6836 
"NELL1 WILD-TYPE" 
[1] "hr=" "4"  
D135V2, continuous
D135V3, binary
[1] "tbl2"
                 cls
clus              [,1] [,2]
  NELL1 MUTATED      8    6
  NELL1 WILD-TYPE   85   73
        clus
vv       NELL1 MUTATED NELL1 WILD-TYPE
  FEMALE             8              85
  MALE               6              73
D135V4, continuous
D135V5, multiclass
D135V6, multiclass
    clus
vv   NELL1 MUTATED NELL1 WILD-TYPE
  T1             1              40
  T2            12              96
  T3             1              13
  T4             0               8
D135V7, multiclass
       clus
vv      NELL1 MUTATED NELL1 WILD-TYPE
  N0                9              86
  N1                3              34
  N2+N3             2              33
D135V8, multiclass
    clus
vv   NELL1 MUTATED NELL1 WILD-TYPE
  M0            12             125
  M1             2               7
  MX             0              22
D135V9, multiclass
     clus
vv    NELL1 MUTATED NELL1 WILD-TYPE
  I               7              81
  II              3              30
  III             2              37
  IV              2               7
D135V10, binary
[1] "tbl2"
                 cls
clus              [,1] [,2]
  NELL1 MUTATED      0   14
  NELL1 WILD-TYPE   16  142
     clus
vv    NELL1 MUTATED NELL1 WILD-TYPE
  NO              0              16
  YES            14             142
D135V11, continuous
D135V12, continuous
D135V13, multiclass
                                             clus
vv                                            NELL1 MUTATED NELL1 WILD-TYPE
  CURRENT REFORMED SMOKER FOR < OR = 15 YEARS             5              57
  CURRENT REFORMED SMOKER FOR > 15 YEARS                  3              43
  CURRENT SMOKER                                          5              23
  LIFELONG NON-SMOKER                                     1              23
D135V14, continuous

Clustering(136) Variable = OR2L2 MUTATION ANALYSIS
D136V1, survival
                 sevent
clus2              0  1
  OR2L2 MUTATED    3  5
  OR2L2 WILD-TYPE 96 45
  OR2L2 MUTATED OR2L2 WILD-TYPE 
              8             141 
  OR2L2 MUTATED OR2L2 WILD-TYPE 
              5              45 
$`OR2L2 MUTATED`
TCGA-05-4390 TCGA-05-4396 TCGA-05-4397 TCGA-49-4505 TCGA-50-5051 TCGA-50-5931 
       37.02         9.96        24.03        14.07        14.96         8.78 
TCGA-50-5933 TCGA-55-1595 
       77.88        48.62 

$`OR2L2 WILD-TYPE`
TCGA-05-4249 TCGA-05-4250 TCGA-05-4382 TCGA-05-4384 TCGA-05-4398 TCGA-05-4402 
       38.07         3.98        19.92        14.01        47.05         8.02 
TCGA-05-4405 TCGA-05-4415 TCGA-05-4417 TCGA-05-4418 TCGA-05-4420 TCGA-05-4424 
       20.05         2.96        14.93         8.98        29.95        30.02 
TCGA-05-4426 TCGA-05-4427 TCGA-05-4430 TCGA-05-4432 TCGA-05-4433 TCGA-05-4434 
       26.01        26.01        25.02        25.02        24.00        15.02 
TCGA-05-5420 TCGA-05-5423 TCGA-05-5425 TCGA-05-5429 TCGA-05-5715 TCGA-35-3615 
        1.02         4.96         2.96         0.99         2.04         0.46 
TCGA-35-4122 TCGA-35-4123 TCGA-35-5375 TCGA-38-4625 TCGA-38-4626 TCGA-38-4627 
        7.36         5.95         8.68        47.61        85.32        37.71 
TCGA-38-4628 TCGA-38-4629 TCGA-38-4630 TCGA-38-4631 TCGA-38-4632 TCGA-38-6178 
       49.02        28.37        35.28        11.64        44.61         5.19 
TCGA-44-2655 TCGA-44-2656 TCGA-44-2657 TCGA-44-2659 TCGA-44-2661 TCGA-44-2662 
       18.87        19.10        13.15        17.39         3.39        15.78 
TCGA-44-2665 TCGA-44-2666 TCGA-44-2668 TCGA-44-3396 TCGA-44-3398 TCGA-44-3918 
       13.15         3.19         8.09        10.22         8.32         6.44 
TCGA-44-3919 TCGA-44-4112 TCGA-44-5643 TCGA-44-5645 TCGA-44-6144 TCGA-44-6145 
        6.21         4.60         3.48         6.84         0.30         3.35 
TCGA-44-6146 TCGA-44-6147 TCGA-44-6148 TCGA-44-6774 TCGA-44-6775 TCGA-44-6776 
        9.93         7.76         3.12         5.42         2.70        63.72 
TCGA-44-6777 TCGA-44-6778 TCGA-44-6779 TCGA-49-4486 TCGA-49-4487 TCGA-49-4488 
       32.45        36.49        16.41        76.21        28.11        28.57 
TCGA-49-4490 TCGA-49-4494 TCGA-49-4501 TCGA-49-4506 TCGA-49-4507 TCGA-49-4510 
       12.66        35.54        46.72        32.84         8.81        29.46 
TCGA-49-4512 TCGA-49-4514 TCGA-49-6742 TCGA-49-6743 TCGA-49-6744 TCGA-49-6745 
       29.75        43.20        15.02        12.13        12.99         4.93 
TCGA-50-5044 TCGA-50-5045 TCGA-50-5049 TCGA-50-5055 TCGA-50-5066 TCGA-50-5068 
       20.48        71.47        48.82        25.81         9.76        49.28 
TCGA-50-5072 TCGA-50-5930 TCGA-50-5932 TCGA-50-5935 TCGA-50-5936 TCGA-50-5939 
        8.05         9.27        35.87        21.47         8.45        15.12 
TCGA-50-5941 TCGA-50-5942 TCGA-50-5944 TCGA-50-5946 TCGA-50-6590 TCGA-50-6591 
        9.37         4.44        12.26        11.47        42.31         3.88 
TCGA-50-6592 TCGA-50-6593 TCGA-50-6594 TCGA-50-6595 TCGA-50-6597 TCGA-55-1592 
       25.51        11.05        12.16         6.21        33.37        23.05 
TCGA-55-1594 TCGA-55-1596 TCGA-55-5899 TCGA-55-6543 TCGA-55-6642 TCGA-55-6712 
       38.73        45.17         2.86         0.07        32.61         0.79 
TCGA-64-1676 TCGA-64-1677 TCGA-64-1678 TCGA-64-1680 TCGA-64-5774 TCGA-64-5775 
       56.81        20.65        39.09        37.02        83.84         0.10 
TCGA-64-5778 TCGA-64-5779 TCGA-64-5781 TCGA-64-5815 TCGA-67-3770 TCGA-67-3771 
       30.44        16.67        39.52         7.33         0.99         1.97 
TCGA-67-3772 TCGA-67-3773 TCGA-67-3774 TCGA-67-6215 TCGA-67-6216 TCGA-67-6217 
        0.59         2.04         0.59         0.89         0.69        13.87 
TCGA-71-6725 TCGA-73-4658 TCGA-73-4659 TCGA-73-4662 TCGA-73-4666 TCGA-73-4668 
        2.01        52.57        23.38        29.95        20.28        15.35 
TCGA-73-4670 TCGA-73-4675 TCGA-73-4676 TCGA-73-4677 TCGA-91-6828 TCGA-91-6829 
        0.46         1.32         4.01         1.25         1.22        41.33 
TCGA-91-6831 TCGA-91-6835 TCGA-91-6836 
        1.28         1.15         0.36 

  OR2L2 MUTATED OR2L2 WILD-TYPE 
           8.78            0.07 
  OR2L2 MUTATED OR2L2 WILD-TYPE 
          77.88           85.32 
  OR2L2 MUTATED OR2L2 WILD-TYPE 
         19.495          13.150 
[1] "8.8 - 77.9 (19.5)" "0.1 - 85.3 (13.2)"
     TCGA-05-4249      TCGA-05-4250      TCGA-05-4382      TCGA-05-4384 
"OR2L2 WILD-TYPE" "OR2L2 WILD-TYPE" "OR2L2 WILD-TYPE" "OR2L2 WILD-TYPE" 
     TCGA-05-4390      TCGA-05-4396      TCGA-05-4397      TCGA-05-4398 
  "OR2L2 MUTATED"   "OR2L2 MUTATED"   "OR2L2 MUTATED" "OR2L2 WILD-TYPE" 
     TCGA-05-4402      TCGA-05-4405      TCGA-05-4415      TCGA-05-4417 
"OR2L2 WILD-TYPE" "OR2L2 WILD-TYPE" "OR2L2 WILD-TYPE" "OR2L2 WILD-TYPE" 
     TCGA-05-4418      TCGA-05-4420      TCGA-05-4424      TCGA-05-4426 
"OR2L2 WILD-TYPE" "OR2L2 WILD-TYPE" "OR2L2 WILD-TYPE" "OR2L2 WILD-TYPE" 
     TCGA-05-4427      TCGA-05-4430      TCGA-05-4432      TCGA-05-4433 
"OR2L2 WILD-TYPE" "OR2L2 WILD-TYPE" "OR2L2 WILD-TYPE" "OR2L2 WILD-TYPE" 
     TCGA-05-4434      TCGA-05-5420      TCGA-05-5423      TCGA-05-5425 
"OR2L2 WILD-TYPE" "OR2L2 WILD-TYPE" "OR2L2 WILD-TYPE" "OR2L2 WILD-TYPE" 
     TCGA-05-5429      TCGA-05-5715      TCGA-35-3615      TCGA-35-4122 
"OR2L2 WILD-TYPE" "OR2L2 WILD-TYPE" "OR2L2 WILD-TYPE" "OR2L2 WILD-TYPE" 
     TCGA-35-4123      TCGA-35-5375      TCGA-38-4625      TCGA-38-4626 
"OR2L2 WILD-TYPE" "OR2L2 WILD-TYPE" "OR2L2 WILD-TYPE" "OR2L2 WILD-TYPE" 
     TCGA-38-4627      TCGA-38-4628      TCGA-38-4629      TCGA-38-4630 
"OR2L2 WILD-TYPE" "OR2L2 WILD-TYPE" "OR2L2 WILD-TYPE" "OR2L2 WILD-TYPE" 
     TCGA-38-4631      TCGA-38-4632      TCGA-38-6178      TCGA-44-2655 
"OR2L2 WILD-TYPE" "OR2L2 WILD-TYPE" "OR2L2 WILD-TYPE" "OR2L2 WILD-TYPE" 
     TCGA-44-2656      TCGA-44-2657      TCGA-44-2659      TCGA-44-2661 
"OR2L2 WILD-TYPE" "OR2L2 WILD-TYPE" "OR2L2 WILD-TYPE" "OR2L2 WILD-TYPE" 
     TCGA-44-2662      TCGA-44-2665      TCGA-44-2666      TCGA-44-2668 
"OR2L2 WILD-TYPE" "OR2L2 WILD-TYPE" "OR2L2 WILD-TYPE" "OR2L2 WILD-TYPE" 
     TCGA-44-3396      TCGA-44-3398      TCGA-44-3918      TCGA-44-3919 
"OR2L2 WILD-TYPE" "OR2L2 WILD-TYPE" "OR2L2 WILD-TYPE" "OR2L2 WILD-TYPE" 
     TCGA-44-4112      TCGA-44-5643      TCGA-44-5645      TCGA-44-6144 
"OR2L2 WILD-TYPE" "OR2L2 WILD-TYPE" "OR2L2 WILD-TYPE" "OR2L2 WILD-TYPE" 
     TCGA-44-6145      TCGA-44-6146      TCGA-44-6147      TCGA-44-6148 
"OR2L2 WILD-TYPE" "OR2L2 WILD-TYPE" "OR2L2 WILD-TYPE" "OR2L2 WILD-TYPE" 
     TCGA-44-6774      TCGA-44-6775      TCGA-44-6776      TCGA-44-6777 
"OR2L2 WILD-TYPE" "OR2L2 WILD-TYPE" "OR2L2 WILD-TYPE" "OR2L2 WILD-TYPE" 
     TCGA-44-6778      TCGA-44-6779      TCGA-49-4486      TCGA-49-4487 
"OR2L2 WILD-TYPE" "OR2L2 WILD-TYPE" "OR2L2 WILD-TYPE" "OR2L2 WILD-TYPE" 
     TCGA-49-4488      TCGA-49-4490      TCGA-49-4494      TCGA-49-4501 
"OR2L2 WILD-TYPE" "OR2L2 WILD-TYPE" "OR2L2 WILD-TYPE" "OR2L2 WILD-TYPE" 
     TCGA-49-4505      TCGA-49-4506      TCGA-49-4507      TCGA-49-4510 
  "OR2L2 MUTATED" "OR2L2 WILD-TYPE" "OR2L2 WILD-TYPE" "OR2L2 WILD-TYPE" 
     TCGA-49-4512      TCGA-49-4514      TCGA-49-6742      TCGA-49-6743 
"OR2L2 WILD-TYPE" "OR2L2 WILD-TYPE" "OR2L2 WILD-TYPE" "OR2L2 WILD-TYPE" 
     TCGA-49-6744      TCGA-49-6745      TCGA-50-5044      TCGA-50-5045 
"OR2L2 WILD-TYPE" "OR2L2 WILD-TYPE" "OR2L2 WILD-TYPE" "OR2L2 WILD-TYPE" 
     TCGA-50-5049      TCGA-50-5051      TCGA-50-5055      TCGA-50-5066 
"OR2L2 WILD-TYPE"   "OR2L2 MUTATED" "OR2L2 WILD-TYPE" "OR2L2 WILD-TYPE" 
     TCGA-50-5068      TCGA-50-5072      TCGA-50-5930      TCGA-50-5931 
"OR2L2 WILD-TYPE" "OR2L2 WILD-TYPE" "OR2L2 WILD-TYPE"   "OR2L2 MUTATED" 
     TCGA-50-5932      TCGA-50-5933      TCGA-50-5935      TCGA-50-5936 
"OR2L2 WILD-TYPE"   "OR2L2 MUTATED" "OR2L2 WILD-TYPE" "OR2L2 WILD-TYPE" 
     TCGA-50-5939      TCGA-50-5941      TCGA-50-5942      TCGA-50-5944 
"OR2L2 WILD-TYPE" "OR2L2 WILD-TYPE" "OR2L2 WILD-TYPE" "OR2L2 WILD-TYPE" 
     TCGA-50-5946      TCGA-50-6590      TCGA-50-6591      TCGA-50-6592 
"OR2L2 WILD-TYPE" "OR2L2 WILD-TYPE" "OR2L2 WILD-TYPE" "OR2L2 WILD-TYPE" 
     TCGA-50-6593      TCGA-50-6594      TCGA-50-6595      TCGA-50-6597 
"OR2L2 WILD-TYPE" "OR2L2 WILD-TYPE" "OR2L2 WILD-TYPE" "OR2L2 WILD-TYPE" 
     TCGA-55-1592      TCGA-55-1594      TCGA-55-1595      TCGA-55-1596 
"OR2L2 WILD-TYPE" "OR2L2 WILD-TYPE"   "OR2L2 MUTATED" "OR2L2 WILD-TYPE" 
     TCGA-55-5899      TCGA-55-6543      TCGA-55-6642      TCGA-55-6712 
"OR2L2 WILD-TYPE" "OR2L2 WILD-TYPE" "OR2L2 WILD-TYPE" "OR2L2 WILD-TYPE" 
     TCGA-64-1676      TCGA-64-1677      TCGA-64-1678      TCGA-64-1680 
"OR2L2 WILD-TYPE" "OR2L2 WILD-TYPE" "OR2L2 WILD-TYPE" "OR2L2 WILD-TYPE" 
     TCGA-64-5774      TCGA-64-5775      TCGA-64-5778      TCGA-64-5779 
"OR2L2 WILD-TYPE" "OR2L2 WILD-TYPE" "OR2L2 WILD-TYPE" "OR2L2 WILD-TYPE" 
     TCGA-64-5781      TCGA-64-5815      TCGA-67-3770      TCGA-67-3771 
"OR2L2 WILD-TYPE" "OR2L2 WILD-TYPE" "OR2L2 WILD-TYPE" "OR2L2 WILD-TYPE" 
     TCGA-67-3772      TCGA-67-3773      TCGA-67-3774      TCGA-67-6215 
"OR2L2 WILD-TYPE" "OR2L2 WILD-TYPE" "OR2L2 WILD-TYPE" "OR2L2 WILD-TYPE" 
     TCGA-67-6216      TCGA-67-6217      TCGA-71-6725      TCGA-73-4658 
"OR2L2 WILD-TYPE" "OR2L2 WILD-TYPE" "OR2L2 WILD-TYPE" "OR2L2 WILD-TYPE" 
     TCGA-73-4659      TCGA-73-4662      TCGA-73-4666      TCGA-73-4668 
"OR2L2 WILD-TYPE" "OR2L2 WILD-TYPE" "OR2L2 WILD-TYPE" "OR2L2 WILD-TYPE" 
     TCGA-73-4670      TCGA-73-4675      TCGA-73-4676      TCGA-73-4677 
"OR2L2 WILD-TYPE" "OR2L2 WILD-TYPE" "OR2L2 WILD-TYPE" "OR2L2 WILD-TYPE" 
     TCGA-91-6828      TCGA-91-6829      TCGA-91-6831      TCGA-91-6835 
"OR2L2 WILD-TYPE" "OR2L2 WILD-TYPE" "OR2L2 WILD-TYPE" "OR2L2 WILD-TYPE" 
     TCGA-91-6836 
"OR2L2 WILD-TYPE" 
     TCGA-05-4249      TCGA-05-4250      TCGA-05-4382      TCGA-05-4384 
"OR2L2 WILD-TYPE" "OR2L2 WILD-TYPE" "OR2L2 WILD-TYPE" "OR2L2 WILD-TYPE" 
     TCGA-05-4390      TCGA-05-4396      TCGA-05-4397      TCGA-05-4398 
  "OR2L2 MUTATED"   "OR2L2 MUTATED"   "OR2L2 MUTATED" "OR2L2 WILD-TYPE" 
     TCGA-05-4402      TCGA-05-4405      TCGA-05-4415      TCGA-05-4417 
"OR2L2 WILD-TYPE" "OR2L2 WILD-TYPE" "OR2L2 WILD-TYPE" "OR2L2 WILD-TYPE" 
     TCGA-05-4418      TCGA-05-4420      TCGA-05-4424      TCGA-05-4426 
"OR2L2 WILD-TYPE" "OR2L2 WILD-TYPE" "OR2L2 WILD-TYPE" "OR2L2 WILD-TYPE" 
     TCGA-05-4427      TCGA-05-4430      TCGA-05-4432      TCGA-05-4433 
"OR2L2 WILD-TYPE" "OR2L2 WILD-TYPE" "OR2L2 WILD-TYPE" "OR2L2 WILD-TYPE" 
     TCGA-05-4434      TCGA-05-5420      TCGA-05-5423      TCGA-05-5425 
"OR2L2 WILD-TYPE" "OR2L2 WILD-TYPE" "OR2L2 WILD-TYPE" "OR2L2 WILD-TYPE" 
     TCGA-05-5429      TCGA-05-5715      TCGA-35-3615      TCGA-35-4122 
"OR2L2 WILD-TYPE" "OR2L2 WILD-TYPE" "OR2L2 WILD-TYPE" "OR2L2 WILD-TYPE" 
     TCGA-35-4123      TCGA-35-5375      TCGA-38-4625      TCGA-38-4626 
"OR2L2 WILD-TYPE" "OR2L2 WILD-TYPE" "OR2L2 WILD-TYPE" "OR2L2 WILD-TYPE" 
     TCGA-38-4627      TCGA-38-4628      TCGA-38-4629      TCGA-38-4630 
"OR2L2 WILD-TYPE" "OR2L2 WILD-TYPE" "OR2L2 WILD-TYPE" "OR2L2 WILD-TYPE" 
     TCGA-38-4631      TCGA-38-4632      TCGA-38-6178      TCGA-44-2655 
"OR2L2 WILD-TYPE" "OR2L2 WILD-TYPE" "OR2L2 WILD-TYPE" "OR2L2 WILD-TYPE" 
     TCGA-44-2656      TCGA-44-2657      TCGA-44-2659      TCGA-44-2661 
"OR2L2 WILD-TYPE" "OR2L2 WILD-TYPE" "OR2L2 WILD-TYPE" "OR2L2 WILD-TYPE" 
     TCGA-44-2662      TCGA-44-2665      TCGA-44-2666      TCGA-44-2668 
"OR2L2 WILD-TYPE" "OR2L2 WILD-TYPE" "OR2L2 WILD-TYPE" "OR2L2 WILD-TYPE" 
     TCGA-44-3396      TCGA-44-3398      TCGA-44-3918      TCGA-44-3919 
"OR2L2 WILD-TYPE" "OR2L2 WILD-TYPE" "OR2L2 WILD-TYPE" "OR2L2 WILD-TYPE" 
     TCGA-44-4112      TCGA-44-5643      TCGA-44-5645      TCGA-44-6144 
"OR2L2 WILD-TYPE" "OR2L2 WILD-TYPE" "OR2L2 WILD-TYPE" "OR2L2 WILD-TYPE" 
     TCGA-44-6145      TCGA-44-6146      TCGA-44-6147      TCGA-44-6148 
"OR2L2 WILD-TYPE" "OR2L2 WILD-TYPE" "OR2L2 WILD-TYPE" "OR2L2 WILD-TYPE" 
     TCGA-44-6774      TCGA-44-6775      TCGA-44-6776      TCGA-44-6777 
"OR2L2 WILD-TYPE" "OR2L2 WILD-TYPE" "OR2L2 WILD-TYPE" "OR2L2 WILD-TYPE" 
     TCGA-44-6778      TCGA-44-6779      TCGA-49-4486      TCGA-49-4487 
"OR2L2 WILD-TYPE" "OR2L2 WILD-TYPE" "OR2L2 WILD-TYPE" "OR2L2 WILD-TYPE" 
     TCGA-49-4488      TCGA-49-4490      TCGA-49-4494      TCGA-49-4501 
"OR2L2 WILD-TYPE" "OR2L2 WILD-TYPE" "OR2L2 WILD-TYPE" "OR2L2 WILD-TYPE" 
     TCGA-49-4505      TCGA-49-4506      TCGA-49-4507      TCGA-49-4510 
  "OR2L2 MUTATED" "OR2L2 WILD-TYPE" "OR2L2 WILD-TYPE" "OR2L2 WILD-TYPE" 
     TCGA-49-4512      TCGA-49-4514      TCGA-49-6742      TCGA-49-6743 
"OR2L2 WILD-TYPE" "OR2L2 WILD-TYPE" "OR2L2 WILD-TYPE" "OR2L2 WILD-TYPE" 
     TCGA-49-6744      TCGA-49-6745      TCGA-50-5044      TCGA-50-5045 
"OR2L2 WILD-TYPE" "OR2L2 WILD-TYPE" "OR2L2 WILD-TYPE" "OR2L2 WILD-TYPE" 
     TCGA-50-5049      TCGA-50-5051      TCGA-50-5055      TCGA-50-5066 
"OR2L2 WILD-TYPE"   "OR2L2 MUTATED" "OR2L2 WILD-TYPE" "OR2L2 WILD-TYPE" 
     TCGA-50-5068      TCGA-50-5072      TCGA-50-5930      TCGA-50-5931 
"OR2L2 WILD-TYPE" "OR2L2 WILD-TYPE" "OR2L2 WILD-TYPE"   "OR2L2 MUTATED" 
     TCGA-50-5932      TCGA-50-5933      TCGA-50-5935      TCGA-50-5936 
"OR2L2 WILD-TYPE"   "OR2L2 MUTATED" "OR2L2 WILD-TYPE" "OR2L2 WILD-TYPE" 
     TCGA-50-5939      TCGA-50-5941      TCGA-50-5942      TCGA-50-5944 
"OR2L2 WILD-TYPE" "OR2L2 WILD-TYPE" "OR2L2 WILD-TYPE" "OR2L2 WILD-TYPE" 
     TCGA-50-5946      TCGA-50-6590      TCGA-50-6591      TCGA-50-6592 
"OR2L2 WILD-TYPE" "OR2L2 WILD-TYPE" "OR2L2 WILD-TYPE" "OR2L2 WILD-TYPE" 
     TCGA-50-6593      TCGA-50-6594      TCGA-50-6595      TCGA-50-6597 
"OR2L2 WILD-TYPE" "OR2L2 WILD-TYPE" "OR2L2 WILD-TYPE" "OR2L2 WILD-TYPE" 
     TCGA-55-1592      TCGA-55-1594      TCGA-55-1595      TCGA-55-1596 
"OR2L2 WILD-TYPE" "OR2L2 WILD-TYPE"   "OR2L2 MUTATED" "OR2L2 WILD-TYPE" 
     TCGA-55-5899      TCGA-55-6543      TCGA-55-6642      TCGA-55-6712 
"OR2L2 WILD-TYPE" "OR2L2 WILD-TYPE" "OR2L2 WILD-TYPE" "OR2L2 WILD-TYPE" 
     TCGA-64-1676      TCGA-64-1677      TCGA-64-1678      TCGA-64-1680 
"OR2L2 WILD-TYPE" "OR2L2 WILD-TYPE" "OR2L2 WILD-TYPE" "OR2L2 WILD-TYPE" 
     TCGA-64-5774      TCGA-64-5775      TCGA-64-5778      TCGA-64-5779 
"OR2L2 WILD-TYPE" "OR2L2 WILD-TYPE" "OR2L2 WILD-TYPE" "OR2L2 WILD-TYPE" 
     TCGA-64-5781      TCGA-64-5815      TCGA-67-3770      TCGA-67-3771 
"OR2L2 WILD-TYPE" "OR2L2 WILD-TYPE" "OR2L2 WILD-TYPE" "OR2L2 WILD-TYPE" 
     TCGA-67-3772      TCGA-67-3773      TCGA-67-3774      TCGA-67-6215 
"OR2L2 WILD-TYPE" "OR2L2 WILD-TYPE" "OR2L2 WILD-TYPE" "OR2L2 WILD-TYPE" 
     TCGA-67-6216      TCGA-67-6217      TCGA-71-6725      TCGA-73-4658 
"OR2L2 WILD-TYPE" "OR2L2 WILD-TYPE" "OR2L2 WILD-TYPE" "OR2L2 WILD-TYPE" 
     TCGA-73-4659      TCGA-73-4662      TCGA-73-4666      TCGA-73-4668 
"OR2L2 WILD-TYPE" "OR2L2 WILD-TYPE" "OR2L2 WILD-TYPE" "OR2L2 WILD-TYPE" 
     TCGA-73-4670      TCGA-73-4675      TCGA-73-4676      TCGA-73-4677 
"OR2L2 WILD-TYPE" "OR2L2 WILD-TYPE" "OR2L2 WILD-TYPE" "OR2L2 WILD-TYPE" 
     TCGA-91-6828      TCGA-91-6829      TCGA-91-6831      TCGA-91-6835 
"OR2L2 WILD-TYPE" "OR2L2 WILD-TYPE" "OR2L2 WILD-TYPE" "OR2L2 WILD-TYPE" 
     TCGA-91-6836 
"OR2L2 WILD-TYPE" 
     TCGA-05-4249      TCGA-05-4250      TCGA-05-4382      TCGA-05-4384 
"OR2L2 WILD-TYPE" "OR2L2 WILD-TYPE" "OR2L2 WILD-TYPE" "OR2L2 WILD-TYPE" 
     TCGA-05-4390      TCGA-05-4396      TCGA-05-4397      TCGA-05-4398 
  "OR2L2 MUTATED"   "OR2L2 MUTATED"   "OR2L2 MUTATED" "OR2L2 WILD-TYPE" 
     TCGA-05-4402      TCGA-05-4405      TCGA-05-4415      TCGA-05-4417 
"OR2L2 WILD-TYPE" "OR2L2 WILD-TYPE" "OR2L2 WILD-TYPE" "OR2L2 WILD-TYPE" 
     TCGA-05-4418      TCGA-05-4420      TCGA-05-4424      TCGA-05-4426 
"OR2L2 WILD-TYPE" "OR2L2 WILD-TYPE" "OR2L2 WILD-TYPE" "OR2L2 WILD-TYPE" 
     TCGA-05-4427      TCGA-05-4430      TCGA-05-4432      TCGA-05-4433 
"OR2L2 WILD-TYPE" "OR2L2 WILD-TYPE" "OR2L2 WILD-TYPE" "OR2L2 WILD-TYPE" 
     TCGA-05-4434      TCGA-05-5420      TCGA-05-5423      TCGA-05-5425 
"OR2L2 WILD-TYPE" "OR2L2 WILD-TYPE" "OR2L2 WILD-TYPE" "OR2L2 WILD-TYPE" 
     TCGA-05-5429      TCGA-05-5715      TCGA-35-3615      TCGA-35-4122 
"OR2L2 WILD-TYPE" "OR2L2 WILD-TYPE" "OR2L2 WILD-TYPE" "OR2L2 WILD-TYPE" 
     TCGA-35-4123      TCGA-35-5375      TCGA-38-4625      TCGA-38-4626 
"OR2L2 WILD-TYPE" "OR2L2 WILD-TYPE" "OR2L2 WILD-TYPE" "OR2L2 WILD-TYPE" 
     TCGA-38-4627      TCGA-38-4628      TCGA-38-4629      TCGA-38-4630 
"OR2L2 WILD-TYPE" "OR2L2 WILD-TYPE" "OR2L2 WILD-TYPE" "OR2L2 WILD-TYPE" 
     TCGA-38-4631      TCGA-38-4632      TCGA-38-6178      TCGA-44-2655 
"OR2L2 WILD-TYPE" "OR2L2 WILD-TYPE" "OR2L2 WILD-TYPE" "OR2L2 WILD-TYPE" 
     TCGA-44-2656      TCGA-44-2657      TCGA-44-2659      TCGA-44-2661 
"OR2L2 WILD-TYPE" "OR2L2 WILD-TYPE" "OR2L2 WILD-TYPE" "OR2L2 WILD-TYPE" 
     TCGA-44-2662      TCGA-44-2665      TCGA-44-2666      TCGA-44-2668 
"OR2L2 WILD-TYPE" "OR2L2 WILD-TYPE" "OR2L2 WILD-TYPE" "OR2L2 WILD-TYPE" 
     TCGA-44-3396      TCGA-44-3398      TCGA-44-3918      TCGA-44-3919 
"OR2L2 WILD-TYPE" "OR2L2 WILD-TYPE" "OR2L2 WILD-TYPE" "OR2L2 WILD-TYPE" 
     TCGA-44-4112      TCGA-44-5643      TCGA-44-5645      TCGA-44-6144 
"OR2L2 WILD-TYPE" "OR2L2 WILD-TYPE" "OR2L2 WILD-TYPE" "OR2L2 WILD-TYPE" 
     TCGA-44-6145      TCGA-44-6146      TCGA-44-6147      TCGA-44-6148 
"OR2L2 WILD-TYPE" "OR2L2 WILD-TYPE" "OR2L2 WILD-TYPE" "OR2L2 WILD-TYPE" 
     TCGA-44-6774      TCGA-44-6775      TCGA-44-6776      TCGA-44-6777 
"OR2L2 WILD-TYPE" "OR2L2 WILD-TYPE" "OR2L2 WILD-TYPE" "OR2L2 WILD-TYPE" 
     TCGA-44-6778      TCGA-44-6779      TCGA-49-4486      TCGA-49-4487 
"OR2L2 WILD-TYPE" "OR2L2 WILD-TYPE" "OR2L2 WILD-TYPE" "OR2L2 WILD-TYPE" 
     TCGA-49-4488      TCGA-49-4490      TCGA-49-4494      TCGA-49-4501 
"OR2L2 WILD-TYPE" "OR2L2 WILD-TYPE" "OR2L2 WILD-TYPE" "OR2L2 WILD-TYPE" 
     TCGA-49-4505      TCGA-49-4506      TCGA-49-4507      TCGA-49-4510 
  "OR2L2 MUTATED" "OR2L2 WILD-TYPE" "OR2L2 WILD-TYPE" "OR2L2 WILD-TYPE" 
     TCGA-49-4512      TCGA-49-4514      TCGA-49-6742      TCGA-49-6743 
"OR2L2 WILD-TYPE" "OR2L2 WILD-TYPE" "OR2L2 WILD-TYPE" "OR2L2 WILD-TYPE" 
     TCGA-49-6744      TCGA-49-6745      TCGA-50-5044      TCGA-50-5045 
"OR2L2 WILD-TYPE" "OR2L2 WILD-TYPE" "OR2L2 WILD-TYPE" "OR2L2 WILD-TYPE" 
     TCGA-50-5049      TCGA-50-5051      TCGA-50-5055      TCGA-50-5066 
"OR2L2 WILD-TYPE"   "OR2L2 MUTATED" "OR2L2 WILD-TYPE" "OR2L2 WILD-TYPE" 
     TCGA-50-5068      TCGA-50-5072      TCGA-50-5930      TCGA-50-5931 
"OR2L2 WILD-TYPE" "OR2L2 WILD-TYPE" "OR2L2 WILD-TYPE"   "OR2L2 MUTATED" 
     TCGA-50-5932      TCGA-50-5933      TCGA-50-5935      TCGA-50-5936 
"OR2L2 WILD-TYPE"   "OR2L2 MUTATED" "OR2L2 WILD-TYPE" "OR2L2 WILD-TYPE" 
     TCGA-50-5939      TCGA-50-5941      TCGA-50-5942      TCGA-50-5944 
"OR2L2 WILD-TYPE" "OR2L2 WILD-TYPE" "OR2L2 WILD-TYPE" "OR2L2 WILD-TYPE" 
     TCGA-50-5946      TCGA-50-6590      TCGA-50-6591      TCGA-50-6592 
"OR2L2 WILD-TYPE" "OR2L2 WILD-TYPE" "OR2L2 WILD-TYPE" "OR2L2 WILD-TYPE" 
     TCGA-50-6593      TCGA-50-6594      TCGA-50-6595      TCGA-50-6597 
"OR2L2 WILD-TYPE" "OR2L2 WILD-TYPE" "OR2L2 WILD-TYPE" "OR2L2 WILD-TYPE" 
     TCGA-55-1592      TCGA-55-1594      TCGA-55-1595      TCGA-55-1596 
"OR2L2 WILD-TYPE" "OR2L2 WILD-TYPE"   "OR2L2 MUTATED" "OR2L2 WILD-TYPE" 
     TCGA-55-5899      TCGA-55-6543      TCGA-55-6642      TCGA-55-6712 
"OR2L2 WILD-TYPE" "OR2L2 WILD-TYPE" "OR2L2 WILD-TYPE" "OR2L2 WILD-TYPE" 
     TCGA-64-1676      TCGA-64-1677      TCGA-64-1678      TCGA-64-1680 
"OR2L2 WILD-TYPE" "OR2L2 WILD-TYPE" "OR2L2 WILD-TYPE" "OR2L2 WILD-TYPE" 
     TCGA-64-5774      TCGA-64-5775      TCGA-64-5778      TCGA-64-5779 
"OR2L2 WILD-TYPE" "OR2L2 WILD-TYPE" "OR2L2 WILD-TYPE" "OR2L2 WILD-TYPE" 
     TCGA-64-5781      TCGA-64-5815      TCGA-67-3770      TCGA-67-3771 
"OR2L2 WILD-TYPE" "OR2L2 WILD-TYPE" "OR2L2 WILD-TYPE" "OR2L2 WILD-TYPE" 
     TCGA-67-3772      TCGA-67-3773      TCGA-67-3774      TCGA-67-6215 
"OR2L2 WILD-TYPE" "OR2L2 WILD-TYPE" "OR2L2 WILD-TYPE" "OR2L2 WILD-TYPE" 
     TCGA-67-6216      TCGA-67-6217      TCGA-71-6725      TCGA-73-4658 
"OR2L2 WILD-TYPE" "OR2L2 WILD-TYPE" "OR2L2 WILD-TYPE" "OR2L2 WILD-TYPE" 
     TCGA-73-4659      TCGA-73-4662      TCGA-73-4666      TCGA-73-4668 
"OR2L2 WILD-TYPE" "OR2L2 WILD-TYPE" "OR2L2 WILD-TYPE" "OR2L2 WILD-TYPE" 
     TCGA-73-4670      TCGA-73-4675      TCGA-73-4676      TCGA-73-4677 
"OR2L2 WILD-TYPE" "OR2L2 WILD-TYPE" "OR2L2 WILD-TYPE" "OR2L2 WILD-TYPE" 
     TCGA-91-6828      TCGA-91-6829      TCGA-91-6831      TCGA-91-6835 
"OR2L2 WILD-TYPE" "OR2L2 WILD-TYPE" "OR2L2 WILD-TYPE" "OR2L2 WILD-TYPE" 
     TCGA-91-6836 
"OR2L2 WILD-TYPE" 
[1] "hr=" "1.1"
D136V2, continuous
D136V3, binary
[1] "tbl2"
                 cls
clus              [,1] [,2]
  OR2L2 MUTATED      5    4
  OR2L2 WILD-TYPE   88   75
        clus
vv       OR2L2 MUTATED OR2L2 WILD-TYPE
  FEMALE             5              88
  MALE               4              75
D136V4, continuous
D136V5, multiclass
D136V6, multiclass
    clus
vv   OR2L2 MUTATED OR2L2 WILD-TYPE
  T1             1              40
  T2             6             102
  T3             0              14
  T4             2               6
D136V7, multiclass
       clus
vv      OR2L2 MUTATED OR2L2 WILD-TYPE
  N0                3              92
  N1                3              34
  N2+N3             3              32
D136V8, multiclass
    clus
vv   OR2L2 MUTATED OR2L2 WILD-TYPE
  M0             8             129
  M1             1               8
  MX             0              22
D136V9, multiclass
     clus
vv    OR2L2 MUTATED OR2L2 WILD-TYPE
  I               3              85
  II              2              31
  III             3              36
  IV              1               8
D136V10, binary
[1] "tbl2"
                 cls
clus              [,1] [,2]
  OR2L2 MUTATED      2    7
  OR2L2 WILD-TYPE   14  149
     clus
vv    OR2L2 MUTATED OR2L2 WILD-TYPE
  NO              2              14
  YES             7             149
D136V11, continuous
D136V12, continuous
D136V13, multiclass
                                             clus
vv                                            OR2L2 MUTATED OR2L2 WILD-TYPE
  CURRENT REFORMED SMOKER FOR < OR = 15 YEARS             5              57
  CURRENT REFORMED SMOKER FOR > 15 YEARS                  1              45
  CURRENT SMOKER                                          1              27
  LIFELONG NON-SMOKER                                     0              24
D136V14, continuous

Clustering(137) Variable = GALNT13 MUTATION ANALYSIS
D137V1, survival
                   sevent
clus2                0  1
  GALNT13 MUTATED    4  3
  GALNT13 WILD-TYPE 95 47
  GALNT13 MUTATED GALNT13 WILD-TYPE 
                7               142 
  GALNT13 MUTATED GALNT13 WILD-TYPE 
                3                47 
$`GALNT13 MUTATED`
TCGA-05-4396 TCGA-05-4417 TCGA-05-4424 TCGA-44-2655 TCGA-50-5933 TCGA-50-5941 
        9.96        14.93        30.02        18.87        77.88         9.37 
TCGA-64-5775 
        0.10 

$`GALNT13 WILD-TYPE`
TCGA-05-4249 TCGA-05-4250 TCGA-05-4382 TCGA-05-4384 TCGA-05-4390 TCGA-05-4397 
       38.07         3.98        19.92        14.01        37.02        24.03 
TCGA-05-4398 TCGA-05-4402 TCGA-05-4405 TCGA-05-4415 TCGA-05-4418 TCGA-05-4420 
       47.05         8.02        20.05         2.96         8.98        29.95 
TCGA-05-4426 TCGA-05-4427 TCGA-05-4430 TCGA-05-4432 TCGA-05-4433 TCGA-05-4434 
       26.01        26.01        25.02        25.02        24.00        15.02 
TCGA-05-5420 TCGA-05-5423 TCGA-05-5425 TCGA-05-5429 TCGA-05-5715 TCGA-35-3615 
        1.02         4.96         2.96         0.99         2.04         0.46 
TCGA-35-4122 TCGA-35-4123 TCGA-35-5375 TCGA-38-4625 TCGA-38-4626 TCGA-38-4627 
        7.36         5.95         8.68        47.61        85.32        37.71 
TCGA-38-4628 TCGA-38-4629 TCGA-38-4630 TCGA-38-4631 TCGA-38-4632 TCGA-38-6178 
       49.02        28.37        35.28        11.64        44.61         5.19 
TCGA-44-2656 TCGA-44-2657 TCGA-44-2659 TCGA-44-2661 TCGA-44-2662 TCGA-44-2665 
       19.10        13.15        17.39         3.39        15.78        13.15 
TCGA-44-2666 TCGA-44-2668 TCGA-44-3396 TCGA-44-3398 TCGA-44-3918 TCGA-44-3919 
        3.19         8.09        10.22         8.32         6.44         6.21 
TCGA-44-4112 TCGA-44-5643 TCGA-44-5645 TCGA-44-6144 TCGA-44-6145 TCGA-44-6146 
        4.60         3.48         6.84         0.30         3.35         9.93 
TCGA-44-6147 TCGA-44-6148 TCGA-44-6774 TCGA-44-6775 TCGA-44-6776 TCGA-44-6777 
        7.76         3.12         5.42         2.70        63.72        32.45 
TCGA-44-6778 TCGA-44-6779 TCGA-49-4486 TCGA-49-4487 TCGA-49-4488 TCGA-49-4490 
       36.49        16.41        76.21        28.11        28.57        12.66 
TCGA-49-4494 TCGA-49-4501 TCGA-49-4505 TCGA-49-4506 TCGA-49-4507 TCGA-49-4510 
       35.54        46.72        14.07        32.84         8.81        29.46 
TCGA-49-4512 TCGA-49-4514 TCGA-49-6742 TCGA-49-6743 TCGA-49-6744 TCGA-49-6745 
       29.75        43.20        15.02        12.13        12.99         4.93 
TCGA-50-5044 TCGA-50-5045 TCGA-50-5049 TCGA-50-5051 TCGA-50-5055 TCGA-50-5066 
       20.48        71.47        48.82        14.96        25.81         9.76 
TCGA-50-5068 TCGA-50-5072 TCGA-50-5930 TCGA-50-5931 TCGA-50-5932 TCGA-50-5935 
       49.28         8.05         9.27         8.78        35.87        21.47 
TCGA-50-5936 TCGA-50-5939 TCGA-50-5942 TCGA-50-5944 TCGA-50-5946 TCGA-50-6590 
        8.45        15.12         4.44        12.26        11.47        42.31 
TCGA-50-6591 TCGA-50-6592 TCGA-50-6593 TCGA-50-6594 TCGA-50-6595 TCGA-50-6597 
        3.88        25.51        11.05        12.16         6.21        33.37 
TCGA-55-1592 TCGA-55-1594 TCGA-55-1595 TCGA-55-1596 TCGA-55-5899 TCGA-55-6543 
       23.05        38.73        48.62        45.17         2.86         0.07 
TCGA-55-6642 TCGA-55-6712 TCGA-64-1676 TCGA-64-1677 TCGA-64-1678 TCGA-64-1680 
       32.61         0.79        56.81        20.65        39.09        37.02 
TCGA-64-5774 TCGA-64-5778 TCGA-64-5779 TCGA-64-5781 TCGA-64-5815 TCGA-67-3770 
       83.84        30.44        16.67        39.52         7.33         0.99 
TCGA-67-3771 TCGA-67-3772 TCGA-67-3773 TCGA-67-3774 TCGA-67-6215 TCGA-67-6216 
        1.97         0.59         2.04         0.59         0.89         0.69 
TCGA-67-6217 TCGA-71-6725 TCGA-73-4658 TCGA-73-4659 TCGA-73-4662 TCGA-73-4666 
       13.87         2.01        52.57        23.38        29.95        20.28 
TCGA-73-4668 TCGA-73-4670 TCGA-73-4675 TCGA-73-4676 TCGA-73-4677 TCGA-91-6828 
       15.35         0.46         1.32         4.01         1.25         1.22 
TCGA-91-6829 TCGA-91-6831 TCGA-91-6835 TCGA-91-6836 
       41.33         1.28         1.15         0.36 

  GALNT13 MUTATED GALNT13 WILD-TYPE 
             0.10              0.07 
  GALNT13 MUTATED GALNT13 WILD-TYPE 
            77.88             85.32 
  GALNT13 MUTATED GALNT13 WILD-TYPE 
            14.93             13.51 
[1] "0.1 - 77.9 (14.9)" "0.1 - 85.3 (13.5)"
       TCGA-05-4249        TCGA-05-4250        TCGA-05-4382        TCGA-05-4384 
"GALNT13 WILD-TYPE" "GALNT13 WILD-TYPE" "GALNT13 WILD-TYPE" "GALNT13 WILD-TYPE" 
       TCGA-05-4390        TCGA-05-4396        TCGA-05-4397        TCGA-05-4398 
"GALNT13 WILD-TYPE"   "GALNT13 MUTATED" "GALNT13 WILD-TYPE" "GALNT13 WILD-TYPE" 
       TCGA-05-4402        TCGA-05-4405        TCGA-05-4415        TCGA-05-4417 
"GALNT13 WILD-TYPE" "GALNT13 WILD-TYPE" "GALNT13 WILD-TYPE"   "GALNT13 MUTATED" 
       TCGA-05-4418        TCGA-05-4420        TCGA-05-4424        TCGA-05-4426 
"GALNT13 WILD-TYPE" "GALNT13 WILD-TYPE"   "GALNT13 MUTATED" "GALNT13 WILD-TYPE" 
       TCGA-05-4427        TCGA-05-4430        TCGA-05-4432        TCGA-05-4433 
"GALNT13 WILD-TYPE" "GALNT13 WILD-TYPE" "GALNT13 WILD-TYPE" "GALNT13 WILD-TYPE" 
       TCGA-05-4434        TCGA-05-5420        TCGA-05-5423        TCGA-05-5425 
"GALNT13 WILD-TYPE" "GALNT13 WILD-TYPE" "GALNT13 WILD-TYPE" "GALNT13 WILD-TYPE" 
       TCGA-05-5429        TCGA-05-5715        TCGA-35-3615        TCGA-35-4122 
"GALNT13 WILD-TYPE" "GALNT13 WILD-TYPE" "GALNT13 WILD-TYPE" "GALNT13 WILD-TYPE" 
       TCGA-35-4123        TCGA-35-5375        TCGA-38-4625        TCGA-38-4626 
"GALNT13 WILD-TYPE" "GALNT13 WILD-TYPE" "GALNT13 WILD-TYPE" "GALNT13 WILD-TYPE" 
       TCGA-38-4627        TCGA-38-4628        TCGA-38-4629        TCGA-38-4630 
"GALNT13 WILD-TYPE" "GALNT13 WILD-TYPE" "GALNT13 WILD-TYPE" "GALNT13 WILD-TYPE" 
       TCGA-38-4631        TCGA-38-4632        TCGA-38-6178        TCGA-44-2655 
"GALNT13 WILD-TYPE" "GALNT13 WILD-TYPE" "GALNT13 WILD-TYPE"   "GALNT13 MUTATED" 
       TCGA-44-2656        TCGA-44-2657        TCGA-44-2659        TCGA-44-2661 
"GALNT13 WILD-TYPE" "GALNT13 WILD-TYPE" "GALNT13 WILD-TYPE" "GALNT13 WILD-TYPE" 
       TCGA-44-2662        TCGA-44-2665        TCGA-44-2666        TCGA-44-2668 
"GALNT13 WILD-TYPE" "GALNT13 WILD-TYPE" "GALNT13 WILD-TYPE" "GALNT13 WILD-TYPE" 
       TCGA-44-3396        TCGA-44-3398        TCGA-44-3918        TCGA-44-3919 
"GALNT13 WILD-TYPE" "GALNT13 WILD-TYPE" "GALNT13 WILD-TYPE" "GALNT13 WILD-TYPE" 
       TCGA-44-4112        TCGA-44-5643        TCGA-44-5645        TCGA-44-6144 
"GALNT13 WILD-TYPE" "GALNT13 WILD-TYPE" "GALNT13 WILD-TYPE" "GALNT13 WILD-TYPE" 
       TCGA-44-6145        TCGA-44-6146        TCGA-44-6147        TCGA-44-6148 
"GALNT13 WILD-TYPE" "GALNT13 WILD-TYPE" "GALNT13 WILD-TYPE" "GALNT13 WILD-TYPE" 
       TCGA-44-6774        TCGA-44-6775        TCGA-44-6776        TCGA-44-6777 
"GALNT13 WILD-TYPE" "GALNT13 WILD-TYPE" "GALNT13 WILD-TYPE" "GALNT13 WILD-TYPE" 
       TCGA-44-6778        TCGA-44-6779        TCGA-49-4486        TCGA-49-4487 
"GALNT13 WILD-TYPE" "GALNT13 WILD-TYPE" "GALNT13 WILD-TYPE" "GALNT13 WILD-TYPE" 
       TCGA-49-4488        TCGA-49-4490        TCGA-49-4494        TCGA-49-4501 
"GALNT13 WILD-TYPE" "GALNT13 WILD-TYPE" "GALNT13 WILD-TYPE" "GALNT13 WILD-TYPE" 
       TCGA-49-4505        TCGA-49-4506        TCGA-49-4507        TCGA-49-4510 
"GALNT13 WILD-TYPE" "GALNT13 WILD-TYPE" "GALNT13 WILD-TYPE" "GALNT13 WILD-TYPE" 
       TCGA-49-4512        TCGA-49-4514        TCGA-49-6742        TCGA-49-6743 
"GALNT13 WILD-TYPE" "GALNT13 WILD-TYPE" "GALNT13 WILD-TYPE" "GALNT13 WILD-TYPE" 
       TCGA-49-6744        TCGA-49-6745        TCGA-50-5044        TCGA-50-5045 
"GALNT13 WILD-TYPE" "GALNT13 WILD-TYPE" "GALNT13 WILD-TYPE" "GALNT13 WILD-TYPE" 
       TCGA-50-5049        TCGA-50-5051        TCGA-50-5055        TCGA-50-5066 
"GALNT13 WILD-TYPE" "GALNT13 WILD-TYPE" "GALNT13 WILD-TYPE" "GALNT13 WILD-TYPE" 
       TCGA-50-5068        TCGA-50-5072        TCGA-50-5930        TCGA-50-5931 
"GALNT13 WILD-TYPE" "GALNT13 WILD-TYPE" "GALNT13 WILD-TYPE" "GALNT13 WILD-TYPE" 
       TCGA-50-5932        TCGA-50-5933        TCGA-50-5935        TCGA-50-5936 
"GALNT13 WILD-TYPE"   "GALNT13 MUTATED" "GALNT13 WILD-TYPE" "GALNT13 WILD-TYPE" 
       TCGA-50-5939        TCGA-50-5941        TCGA-50-5942        TCGA-50-5944 
"GALNT13 WILD-TYPE"   "GALNT13 MUTATED" "GALNT13 WILD-TYPE" "GALNT13 WILD-TYPE" 
       TCGA-50-5946        TCGA-50-6590        TCGA-50-6591        TCGA-50-6592 
"GALNT13 WILD-TYPE" "GALNT13 WILD-TYPE" "GALNT13 WILD-TYPE" "GALNT13 WILD-TYPE" 
       TCGA-50-6593        TCGA-50-6594        TCGA-50-6595        TCGA-50-6597 
"GALNT13 WILD-TYPE" "GALNT13 WILD-TYPE" "GALNT13 WILD-TYPE" "GALNT13 WILD-TYPE" 
       TCGA-55-1592        TCGA-55-1594        TCGA-55-1595        TCGA-55-1596 
"GALNT13 WILD-TYPE" "GALNT13 WILD-TYPE" "GALNT13 WILD-TYPE" "GALNT13 WILD-TYPE" 
       TCGA-55-5899        TCGA-55-6543        TCGA-55-6642        TCGA-55-6712 
"GALNT13 WILD-TYPE" "GALNT13 WILD-TYPE" "GALNT13 WILD-TYPE" "GALNT13 WILD-TYPE" 
       TCGA-64-1676        TCGA-64-1677        TCGA-64-1678        TCGA-64-1680 
"GALNT13 WILD-TYPE" "GALNT13 WILD-TYPE" "GALNT13 WILD-TYPE" "GALNT13 WILD-TYPE" 
       TCGA-64-5774        TCGA-64-5775        TCGA-64-5778        TCGA-64-5779 
"GALNT13 WILD-TYPE"   "GALNT13 MUTATED" "GALNT13 WILD-TYPE" "GALNT13 WILD-TYPE" 
       TCGA-64-5781        TCGA-64-5815        TCGA-67-3770        TCGA-67-3771 
"GALNT13 WILD-TYPE" "GALNT13 WILD-TYPE" "GALNT13 WILD-TYPE" "GALNT13 WILD-TYPE" 
       TCGA-67-3772        TCGA-67-3773        TCGA-67-3774        TCGA-67-6215 
"GALNT13 WILD-TYPE" "GALNT13 WILD-TYPE" "GALNT13 WILD-TYPE" "GALNT13 WILD-TYPE" 
       TCGA-67-6216        TCGA-67-6217        TCGA-71-6725        TCGA-73-4658 
"GALNT13 WILD-TYPE" "GALNT13 WILD-TYPE" "GALNT13 WILD-TYPE" "GALNT13 WILD-TYPE" 
       TCGA-73-4659        TCGA-73-4662        TCGA-73-4666        TCGA-73-4668 
"GALNT13 WILD-TYPE" "GALNT13 WILD-TYPE" "GALNT13 WILD-TYPE" "GALNT13 WILD-TYPE" 
       TCGA-73-4670        TCGA-73-4675        TCGA-73-4676        TCGA-73-4677 
"GALNT13 WILD-TYPE" "GALNT13 WILD-TYPE" "GALNT13 WILD-TYPE" "GALNT13 WILD-TYPE" 
       TCGA-91-6828        TCGA-91-6829        TCGA-91-6831        TCGA-91-6835 
"GALNT13 WILD-TYPE" "GALNT13 WILD-TYPE" "GALNT13 WILD-TYPE" "GALNT13 WILD-TYPE" 
       TCGA-91-6836 
"GALNT13 WILD-TYPE" 
       TCGA-05-4249        TCGA-05-4250        TCGA-05-4382        TCGA-05-4384 
"GALNT13 WILD-TYPE" "GALNT13 WILD-TYPE" "GALNT13 WILD-TYPE" "GALNT13 WILD-TYPE" 
       TCGA-05-4390        TCGA-05-4396        TCGA-05-4397        TCGA-05-4398 
"GALNT13 WILD-TYPE"   "GALNT13 MUTATED" "GALNT13 WILD-TYPE" "GALNT13 WILD-TYPE" 
       TCGA-05-4402        TCGA-05-4405        TCGA-05-4415        TCGA-05-4417 
"GALNT13 WILD-TYPE" "GALNT13 WILD-TYPE" "GALNT13 WILD-TYPE"   "GALNT13 MUTATED" 
       TCGA-05-4418        TCGA-05-4420        TCGA-05-4424        TCGA-05-4426 
"GALNT13 WILD-TYPE" "GALNT13 WILD-TYPE"   "GALNT13 MUTATED" "GALNT13 WILD-TYPE" 
       TCGA-05-4427        TCGA-05-4430        TCGA-05-4432        TCGA-05-4433 
"GALNT13 WILD-TYPE" "GALNT13 WILD-TYPE" "GALNT13 WILD-TYPE" "GALNT13 WILD-TYPE" 
       TCGA-05-4434        TCGA-05-5420        TCGA-05-5423        TCGA-05-5425 
"GALNT13 WILD-TYPE" "GALNT13 WILD-TYPE" "GALNT13 WILD-TYPE" "GALNT13 WILD-TYPE" 
       TCGA-05-5429        TCGA-05-5715        TCGA-35-3615        TCGA-35-4122 
"GALNT13 WILD-TYPE" "GALNT13 WILD-TYPE" "GALNT13 WILD-TYPE" "GALNT13 WILD-TYPE" 
       TCGA-35-4123        TCGA-35-5375        TCGA-38-4625        TCGA-38-4626 
"GALNT13 WILD-TYPE" "GALNT13 WILD-TYPE" "GALNT13 WILD-TYPE" "GALNT13 WILD-TYPE" 
       TCGA-38-4627        TCGA-38-4628        TCGA-38-4629        TCGA-38-4630 
"GALNT13 WILD-TYPE" "GALNT13 WILD-TYPE" "GALNT13 WILD-TYPE" "GALNT13 WILD-TYPE" 
       TCGA-38-4631        TCGA-38-4632        TCGA-38-6178        TCGA-44-2655 
"GALNT13 WILD-TYPE" "GALNT13 WILD-TYPE" "GALNT13 WILD-TYPE"   "GALNT13 MUTATED" 
       TCGA-44-2656        TCGA-44-2657        TCGA-44-2659        TCGA-44-2661 
"GALNT13 WILD-TYPE" "GALNT13 WILD-TYPE" "GALNT13 WILD-TYPE" "GALNT13 WILD-TYPE" 
       TCGA-44-2662        TCGA-44-2665        TCGA-44-2666        TCGA-44-2668 
"GALNT13 WILD-TYPE" "GALNT13 WILD-TYPE" "GALNT13 WILD-TYPE" "GALNT13 WILD-TYPE" 
       TCGA-44-3396        TCGA-44-3398        TCGA-44-3918        TCGA-44-3919 
"GALNT13 WILD-TYPE" "GALNT13 WILD-TYPE" "GALNT13 WILD-TYPE" "GALNT13 WILD-TYPE" 
       TCGA-44-4112        TCGA-44-5643        TCGA-44-5645        TCGA-44-6144 
"GALNT13 WILD-TYPE" "GALNT13 WILD-TYPE" "GALNT13 WILD-TYPE" "GALNT13 WILD-TYPE" 
       TCGA-44-6145        TCGA-44-6146        TCGA-44-6147        TCGA-44-6148 
"GALNT13 WILD-TYPE" "GALNT13 WILD-TYPE" "GALNT13 WILD-TYPE" "GALNT13 WILD-TYPE" 
       TCGA-44-6774        TCGA-44-6775        TCGA-44-6776        TCGA-44-6777 
"GALNT13 WILD-TYPE" "GALNT13 WILD-TYPE" "GALNT13 WILD-TYPE" "GALNT13 WILD-TYPE" 
       TCGA-44-6778        TCGA-44-6779        TCGA-49-4486        TCGA-49-4487 
"GALNT13 WILD-TYPE" "GALNT13 WILD-TYPE" "GALNT13 WILD-TYPE" "GALNT13 WILD-TYPE" 
       TCGA-49-4488        TCGA-49-4490        TCGA-49-4494        TCGA-49-4501 
"GALNT13 WILD-TYPE" "GALNT13 WILD-TYPE" "GALNT13 WILD-TYPE" "GALNT13 WILD-TYPE" 
       TCGA-49-4505        TCGA-49-4506        TCGA-49-4507        TCGA-49-4510 
"GALNT13 WILD-TYPE" "GALNT13 WILD-TYPE" "GALNT13 WILD-TYPE" "GALNT13 WILD-TYPE" 
       TCGA-49-4512        TCGA-49-4514        TCGA-49-6742        TCGA-49-6743 
"GALNT13 WILD-TYPE" "GALNT13 WILD-TYPE" "GALNT13 WILD-TYPE" "GALNT13 WILD-TYPE" 
       TCGA-49-6744        TCGA-49-6745        TCGA-50-5044        TCGA-50-5045 
"GALNT13 WILD-TYPE" "GALNT13 WILD-TYPE" "GALNT13 WILD-TYPE" "GALNT13 WILD-TYPE" 
       TCGA-50-5049        TCGA-50-5051        TCGA-50-5055        TCGA-50-5066 
"GALNT13 WILD-TYPE" "GALNT13 WILD-TYPE" "GALNT13 WILD-TYPE" "GALNT13 WILD-TYPE" 
       TCGA-50-5068        TCGA-50-5072        TCGA-50-5930        TCGA-50-5931 
"GALNT13 WILD-TYPE" "GALNT13 WILD-TYPE" "GALNT13 WILD-TYPE" "GALNT13 WILD-TYPE" 
       TCGA-50-5932        TCGA-50-5933        TCGA-50-5935        TCGA-50-5936 
"GALNT13 WILD-TYPE"   "GALNT13 MUTATED" "GALNT13 WILD-TYPE" "GALNT13 WILD-TYPE" 
       TCGA-50-5939        TCGA-50-5941        TCGA-50-5942        TCGA-50-5944 
"GALNT13 WILD-TYPE"   "GALNT13 MUTATED" "GALNT13 WILD-TYPE" "GALNT13 WILD-TYPE" 
       TCGA-50-5946        TCGA-50-6590        TCGA-50-6591        TCGA-50-6592 
"GALNT13 WILD-TYPE" "GALNT13 WILD-TYPE" "GALNT13 WILD-TYPE" "GALNT13 WILD-TYPE" 
       TCGA-50-6593        TCGA-50-6594        TCGA-50-6595        TCGA-50-6597 
"GALNT13 WILD-TYPE" "GALNT13 WILD-TYPE" "GALNT13 WILD-TYPE" "GALNT13 WILD-TYPE" 
       TCGA-55-1592        TCGA-55-1594        TCGA-55-1595        TCGA-55-1596 
"GALNT13 WILD-TYPE" "GALNT13 WILD-TYPE" "GALNT13 WILD-TYPE" "GALNT13 WILD-TYPE" 
       TCGA-55-5899        TCGA-55-6543        TCGA-55-6642        TCGA-55-6712 
"GALNT13 WILD-TYPE" "GALNT13 WILD-TYPE" "GALNT13 WILD-TYPE" "GALNT13 WILD-TYPE" 
       TCGA-64-1676        TCGA-64-1677        TCGA-64-1678        TCGA-64-1680 
"GALNT13 WILD-TYPE" "GALNT13 WILD-TYPE" "GALNT13 WILD-TYPE" "GALNT13 WILD-TYPE" 
       TCGA-64-5774        TCGA-64-5775        TCGA-64-5778        TCGA-64-5779 
"GALNT13 WILD-TYPE"   "GALNT13 MUTATED" "GALNT13 WILD-TYPE" "GALNT13 WILD-TYPE" 
       TCGA-64-5781        TCGA-64-5815        TCGA-67-3770        TCGA-67-3771 
"GALNT13 WILD-TYPE" "GALNT13 WILD-TYPE" "GALNT13 WILD-TYPE" "GALNT13 WILD-TYPE" 
       TCGA-67-3772        TCGA-67-3773        TCGA-67-3774        TCGA-67-6215 
"GALNT13 WILD-TYPE" "GALNT13 WILD-TYPE" "GALNT13 WILD-TYPE" "GALNT13 WILD-TYPE" 
       TCGA-67-6216        TCGA-67-6217        TCGA-71-6725        TCGA-73-4658 
"GALNT13 WILD-TYPE" "GALNT13 WILD-TYPE" "GALNT13 WILD-TYPE" "GALNT13 WILD-TYPE" 
       TCGA-73-4659        TCGA-73-4662        TCGA-73-4666        TCGA-73-4668 
"GALNT13 WILD-TYPE" "GALNT13 WILD-TYPE" "GALNT13 WILD-TYPE" "GALNT13 WILD-TYPE" 
       TCGA-73-4670        TCGA-73-4675        TCGA-73-4676        TCGA-73-4677 
"GALNT13 WILD-TYPE" "GALNT13 WILD-TYPE" "GALNT13 WILD-TYPE" "GALNT13 WILD-TYPE" 
       TCGA-91-6828        TCGA-91-6829        TCGA-91-6831        TCGA-91-6835 
"GALNT13 WILD-TYPE" "GALNT13 WILD-TYPE" "GALNT13 WILD-TYPE" "GALNT13 WILD-TYPE" 
       TCGA-91-6836 
"GALNT13 WILD-TYPE" 
       TCGA-05-4249        TCGA-05-4250        TCGA-05-4382        TCGA-05-4384 
"GALNT13 WILD-TYPE" "GALNT13 WILD-TYPE" "GALNT13 WILD-TYPE" "GALNT13 WILD-TYPE" 
       TCGA-05-4390        TCGA-05-4396        TCGA-05-4397        TCGA-05-4398 
"GALNT13 WILD-TYPE"   "GALNT13 MUTATED" "GALNT13 WILD-TYPE" "GALNT13 WILD-TYPE" 
       TCGA-05-4402        TCGA-05-4405        TCGA-05-4415        TCGA-05-4417 
"GALNT13 WILD-TYPE" "GALNT13 WILD-TYPE" "GALNT13 WILD-TYPE"   "GALNT13 MUTATED" 
       TCGA-05-4418        TCGA-05-4420        TCGA-05-4424        TCGA-05-4426 
"GALNT13 WILD-TYPE" "GALNT13 WILD-TYPE"   "GALNT13 MUTATED" "GALNT13 WILD-TYPE" 
       TCGA-05-4427        TCGA-05-4430        TCGA-05-4432        TCGA-05-4433 
"GALNT13 WILD-TYPE" "GALNT13 WILD-TYPE" "GALNT13 WILD-TYPE" "GALNT13 WILD-TYPE" 
       TCGA-05-4434        TCGA-05-5420        TCGA-05-5423        TCGA-05-5425 
"GALNT13 WILD-TYPE" "GALNT13 WILD-TYPE" "GALNT13 WILD-TYPE" "GALNT13 WILD-TYPE" 
       TCGA-05-5429        TCGA-05-5715        TCGA-35-3615        TCGA-35-4122 
"GALNT13 WILD-TYPE" "GALNT13 WILD-TYPE" "GALNT13 WILD-TYPE" "GALNT13 WILD-TYPE" 
       TCGA-35-4123        TCGA-35-5375        TCGA-38-4625        TCGA-38-4626 
"GALNT13 WILD-TYPE" "GALNT13 WILD-TYPE" "GALNT13 WILD-TYPE" "GALNT13 WILD-TYPE" 
       TCGA-38-4627        TCGA-38-4628        TCGA-38-4629        TCGA-38-4630 
"GALNT13 WILD-TYPE" "GALNT13 WILD-TYPE" "GALNT13 WILD-TYPE" "GALNT13 WILD-TYPE" 
       TCGA-38-4631        TCGA-38-4632        TCGA-38-6178        TCGA-44-2655 
"GALNT13 WILD-TYPE" "GALNT13 WILD-TYPE" "GALNT13 WILD-TYPE"   "GALNT13 MUTATED" 
       TCGA-44-2656        TCGA-44-2657        TCGA-44-2659        TCGA-44-2661 
"GALNT13 WILD-TYPE" "GALNT13 WILD-TYPE" "GALNT13 WILD-TYPE" "GALNT13 WILD-TYPE" 
       TCGA-44-2662        TCGA-44-2665        TCGA-44-2666        TCGA-44-2668 
"GALNT13 WILD-TYPE" "GALNT13 WILD-TYPE" "GALNT13 WILD-TYPE" "GALNT13 WILD-TYPE" 
       TCGA-44-3396        TCGA-44-3398        TCGA-44-3918        TCGA-44-3919 
"GALNT13 WILD-TYPE" "GALNT13 WILD-TYPE" "GALNT13 WILD-TYPE" "GALNT13 WILD-TYPE" 
       TCGA-44-4112        TCGA-44-5643        TCGA-44-5645        TCGA-44-6144 
"GALNT13 WILD-TYPE" "GALNT13 WILD-TYPE" "GALNT13 WILD-TYPE" "GALNT13 WILD-TYPE" 
       TCGA-44-6145        TCGA-44-6146        TCGA-44-6147        TCGA-44-6148 
"GALNT13 WILD-TYPE" "GALNT13 WILD-TYPE" "GALNT13 WILD-TYPE" "GALNT13 WILD-TYPE" 
       TCGA-44-6774        TCGA-44-6775        TCGA-44-6776        TCGA-44-6777 
"GALNT13 WILD-TYPE" "GALNT13 WILD-TYPE" "GALNT13 WILD-TYPE" "GALNT13 WILD-TYPE" 
       TCGA-44-6778        TCGA-44-6779        TCGA-49-4486        TCGA-49-4487 
"GALNT13 WILD-TYPE" "GALNT13 WILD-TYPE" "GALNT13 WILD-TYPE" "GALNT13 WILD-TYPE" 
       TCGA-49-4488        TCGA-49-4490        TCGA-49-4494        TCGA-49-4501 
"GALNT13 WILD-TYPE" "GALNT13 WILD-TYPE" "GALNT13 WILD-TYPE" "GALNT13 WILD-TYPE" 
       TCGA-49-4505        TCGA-49-4506        TCGA-49-4507        TCGA-49-4510 
"GALNT13 WILD-TYPE" "GALNT13 WILD-TYPE" "GALNT13 WILD-TYPE" "GALNT13 WILD-TYPE" 
       TCGA-49-4512        TCGA-49-4514        TCGA-49-6742        TCGA-49-6743 
"GALNT13 WILD-TYPE" "GALNT13 WILD-TYPE" "GALNT13 WILD-TYPE" "GALNT13 WILD-TYPE" 
       TCGA-49-6744        TCGA-49-6745        TCGA-50-5044        TCGA-50-5045 
"GALNT13 WILD-TYPE" "GALNT13 WILD-TYPE" "GALNT13 WILD-TYPE" "GALNT13 WILD-TYPE" 
       TCGA-50-5049        TCGA-50-5051        TCGA-50-5055        TCGA-50-5066 
"GALNT13 WILD-TYPE" "GALNT13 WILD-TYPE" "GALNT13 WILD-TYPE" "GALNT13 WILD-TYPE" 
       TCGA-50-5068        TCGA-50-5072        TCGA-50-5930        TCGA-50-5931 
"GALNT13 WILD-TYPE" "GALNT13 WILD-TYPE" "GALNT13 WILD-TYPE" "GALNT13 WILD-TYPE" 
       TCGA-50-5932        TCGA-50-5933        TCGA-50-5935        TCGA-50-5936 
"GALNT13 WILD-TYPE"   "GALNT13 MUTATED" "GALNT13 WILD-TYPE" "GALNT13 WILD-TYPE" 
       TCGA-50-5939        TCGA-50-5941        TCGA-50-5942        TCGA-50-5944 
"GALNT13 WILD-TYPE"   "GALNT13 MUTATED" "GALNT13 WILD-TYPE" "GALNT13 WILD-TYPE" 
       TCGA-50-5946        TCGA-50-6590        TCGA-50-6591        TCGA-50-6592 
"GALNT13 WILD-TYPE" "GALNT13 WILD-TYPE" "GALNT13 WILD-TYPE" "GALNT13 WILD-TYPE" 
       TCGA-50-6593        TCGA-50-6594        TCGA-50-6595        TCGA-50-6597 
"GALNT13 WILD-TYPE" "GALNT13 WILD-TYPE" "GALNT13 WILD-TYPE" "GALNT13 WILD-TYPE" 
       TCGA-55-1592        TCGA-55-1594        TCGA-55-1595        TCGA-55-1596 
"GALNT13 WILD-TYPE" "GALNT13 WILD-TYPE" "GALNT13 WILD-TYPE" "GALNT13 WILD-TYPE" 
       TCGA-55-5899        TCGA-55-6543        TCGA-55-6642        TCGA-55-6712 
"GALNT13 WILD-TYPE" "GALNT13 WILD-TYPE" "GALNT13 WILD-TYPE" "GALNT13 WILD-TYPE" 
       TCGA-64-1676        TCGA-64-1677        TCGA-64-1678        TCGA-64-1680 
"GALNT13 WILD-TYPE" "GALNT13 WILD-TYPE" "GALNT13 WILD-TYPE" "GALNT13 WILD-TYPE" 
       TCGA-64-5774        TCGA-64-5775        TCGA-64-5778        TCGA-64-5779 
"GALNT13 WILD-TYPE"   "GALNT13 MUTATED" "GALNT13 WILD-TYPE" "GALNT13 WILD-TYPE" 
       TCGA-64-5781        TCGA-64-5815        TCGA-67-3770        TCGA-67-3771 
"GALNT13 WILD-TYPE" "GALNT13 WILD-TYPE" "GALNT13 WILD-TYPE" "GALNT13 WILD-TYPE" 
       TCGA-67-3772        TCGA-67-3773        TCGA-67-3774        TCGA-67-6215 
"GALNT13 WILD-TYPE" "GALNT13 WILD-TYPE" "GALNT13 WILD-TYPE" "GALNT13 WILD-TYPE" 
       TCGA-67-6216        TCGA-67-6217        TCGA-71-6725        TCGA-73-4658 
"GALNT13 WILD-TYPE" "GALNT13 WILD-TYPE" "GALNT13 WILD-TYPE" "GALNT13 WILD-TYPE" 
       TCGA-73-4659        TCGA-73-4662        TCGA-73-4666        TCGA-73-4668 
"GALNT13 WILD-TYPE" "GALNT13 WILD-TYPE" "GALNT13 WILD-TYPE" "GALNT13 WILD-TYPE" 
       TCGA-73-4670        TCGA-73-4675        TCGA-73-4676        TCGA-73-4677 
"GALNT13 WILD-TYPE" "GALNT13 WILD-TYPE" "GALNT13 WILD-TYPE" "GALNT13 WILD-TYPE" 
       TCGA-91-6828        TCGA-91-6829        TCGA-91-6831        TCGA-91-6835 
"GALNT13 WILD-TYPE" "GALNT13 WILD-TYPE" "GALNT13 WILD-TYPE" "GALNT13 WILD-TYPE" 
       TCGA-91-6836 
"GALNT13 WILD-TYPE" 
[1] "hr=" "1.1"
D137V2, continuous
D137V3, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  GALNT13 MUTATED      3    4
  GALNT13 WILD-TYPE   90   75
        clus
vv       GALNT13 MUTATED GALNT13 WILD-TYPE
  FEMALE               3                90
  MALE                 4                75
D137V4, continuous
D137V5, multiclass
D137V6, multiclass
    clus
vv   GALNT13 MUTATED GALNT13 WILD-TYPE
  T1               1                40
  T2               2               106
  T3               1                13
  T4               3                 5
D137V7, multiclass
       clus
vv      GALNT13 MUTATED GALNT13 WILD-TYPE
  N0                  4                91
  N1                  1                36
  N2+N3               2                33
D137V8, multiclass
    clus
vv   GALNT13 MUTATED GALNT13 WILD-TYPE
  M0               7               130
  M1               0                 9
  MX               0                22
D137V9, multiclass
     clus
vv    GALNT13 MUTATED GALNT13 WILD-TYPE
  I                 2                86
  II                1                32
  III               4                35
  IV                0                 9
D137V10, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  GALNT13 MUTATED      1    6
  GALNT13 WILD-TYPE   15  150
     clus
vv    GALNT13 MUTATED GALNT13 WILD-TYPE
  NO                1                15
  YES               6               150
D137V11, continuous
D137V12, continuous
D137V13, multiclass
                                             clus
vv                                            GALNT13 MUTATED GALNT13 WILD-TYPE
  CURRENT REFORMED SMOKER FOR < OR = 15 YEARS               2                60
  CURRENT REFORMED SMOKER FOR > 15 YEARS                    2                44
  CURRENT SMOKER                                            2                26
  LIFELONG NON-SMOKER                                       0                24
D137V14, continuous

Clustering(138) Variable = PIP MUTATION ANALYSIS
D138V1, survival
               sevent
clus2            0  1
  PIP MUTATED    1  2
  PIP WILD-TYPE 98 48
  PIP MUTATED PIP WILD-TYPE 
            3           146 
  PIP MUTATED PIP WILD-TYPE 
            2            48 
$`PIP MUTATED`
TCGA-05-4396 TCGA-05-4398 TCGA-50-6592 
        9.96        47.05        25.51 

$`PIP WILD-TYPE`
TCGA-05-4249 TCGA-05-4250 TCGA-05-4382 TCGA-05-4384 TCGA-05-4390 TCGA-05-4397 
       38.07         3.98        19.92        14.01        37.02        24.03 
TCGA-05-4402 TCGA-05-4405 TCGA-05-4415 TCGA-05-4417 TCGA-05-4418 TCGA-05-4420 
        8.02        20.05         2.96        14.93         8.98        29.95 
TCGA-05-4424 TCGA-05-4426 TCGA-05-4427 TCGA-05-4430 TCGA-05-4432 TCGA-05-4433 
       30.02        26.01        26.01        25.02        25.02        24.00 
TCGA-05-4434 TCGA-05-5420 TCGA-05-5423 TCGA-05-5425 TCGA-05-5429 TCGA-05-5715 
       15.02         1.02         4.96         2.96         0.99         2.04 
TCGA-35-3615 TCGA-35-4122 TCGA-35-4123 TCGA-35-5375 TCGA-38-4625 TCGA-38-4626 
        0.46         7.36         5.95         8.68        47.61        85.32 
TCGA-38-4627 TCGA-38-4628 TCGA-38-4629 TCGA-38-4630 TCGA-38-4631 TCGA-38-4632 
       37.71        49.02        28.37        35.28        11.64        44.61 
TCGA-38-6178 TCGA-44-2655 TCGA-44-2656 TCGA-44-2657 TCGA-44-2659 TCGA-44-2661 
        5.19        18.87        19.10        13.15        17.39         3.39 
TCGA-44-2662 TCGA-44-2665 TCGA-44-2666 TCGA-44-2668 TCGA-44-3396 TCGA-44-3398 
       15.78        13.15         3.19         8.09        10.22         8.32 
TCGA-44-3918 TCGA-44-3919 TCGA-44-4112 TCGA-44-5643 TCGA-44-5645 TCGA-44-6144 
        6.44         6.21         4.60         3.48         6.84         0.30 
TCGA-44-6145 TCGA-44-6146 TCGA-44-6147 TCGA-44-6148 TCGA-44-6774 TCGA-44-6775 
        3.35         9.93         7.76         3.12         5.42         2.70 
TCGA-44-6776 TCGA-44-6777 TCGA-44-6778 TCGA-44-6779 TCGA-49-4486 TCGA-49-4487 
       63.72        32.45        36.49        16.41        76.21        28.11 
TCGA-49-4488 TCGA-49-4490 TCGA-49-4494 TCGA-49-4501 TCGA-49-4505 TCGA-49-4506 
       28.57        12.66        35.54        46.72        14.07        32.84 
TCGA-49-4507 TCGA-49-4510 TCGA-49-4512 TCGA-49-4514 TCGA-49-6742 TCGA-49-6743 
        8.81        29.46        29.75        43.20        15.02        12.13 
TCGA-49-6744 TCGA-49-6745 TCGA-50-5044 TCGA-50-5045 TCGA-50-5049 TCGA-50-5051 
       12.99         4.93        20.48        71.47        48.82        14.96 
TCGA-50-5055 TCGA-50-5066 TCGA-50-5068 TCGA-50-5072 TCGA-50-5930 TCGA-50-5931 
       25.81         9.76        49.28         8.05         9.27         8.78 
TCGA-50-5932 TCGA-50-5933 TCGA-50-5935 TCGA-50-5936 TCGA-50-5939 TCGA-50-5941 
       35.87        77.88        21.47         8.45        15.12         9.37 
TCGA-50-5942 TCGA-50-5944 TCGA-50-5946 TCGA-50-6590 TCGA-50-6591 TCGA-50-6593 
        4.44        12.26        11.47        42.31         3.88        11.05 
TCGA-50-6594 TCGA-50-6595 TCGA-50-6597 TCGA-55-1592 TCGA-55-1594 TCGA-55-1595 
       12.16         6.21        33.37        23.05        38.73        48.62 
TCGA-55-1596 TCGA-55-5899 TCGA-55-6543 TCGA-55-6642 TCGA-55-6712 TCGA-64-1676 
       45.17         2.86         0.07        32.61         0.79        56.81 
TCGA-64-1677 TCGA-64-1678 TCGA-64-1680 TCGA-64-5774 TCGA-64-5775 TCGA-64-5778 
       20.65        39.09        37.02        83.84         0.10        30.44 
TCGA-64-5779 TCGA-64-5781 TCGA-64-5815 TCGA-67-3770 TCGA-67-3771 TCGA-67-3772 
       16.67        39.52         7.33         0.99         1.97         0.59 
TCGA-67-3773 TCGA-67-3774 TCGA-67-6215 TCGA-67-6216 TCGA-67-6217 TCGA-71-6725 
        2.04         0.59         0.89         0.69        13.87         2.01 
TCGA-73-4658 TCGA-73-4659 TCGA-73-4662 TCGA-73-4666 TCGA-73-4668 TCGA-73-4670 
       52.57        23.38        29.95        20.28        15.35         0.46 
TCGA-73-4675 TCGA-73-4676 TCGA-73-4677 TCGA-91-6828 TCGA-91-6829 TCGA-91-6831 
        1.32         4.01         1.25         1.22        41.33         1.28 
TCGA-91-6835 TCGA-91-6836 
        1.15         0.36 

  PIP MUTATED PIP WILD-TYPE 
         9.96          0.07 
  PIP MUTATED PIP WILD-TYPE 
        47.05         85.32 
  PIP MUTATED PIP WILD-TYPE 
        25.51         13.51 
[1] "10.0 - 47.0 (25.5)" "0.1 - 85.3 (13.5)" 
   TCGA-05-4249    TCGA-05-4250    TCGA-05-4382    TCGA-05-4384    TCGA-05-4390 
"PIP WILD-TYPE" "PIP WILD-TYPE" "PIP WILD-TYPE" "PIP WILD-TYPE" "PIP WILD-TYPE" 
   TCGA-05-4396    TCGA-05-4397    TCGA-05-4398    TCGA-05-4402    TCGA-05-4405 
  "PIP MUTATED" "PIP WILD-TYPE"   "PIP MUTATED" "PIP WILD-TYPE" "PIP WILD-TYPE" 
   TCGA-05-4415    TCGA-05-4417    TCGA-05-4418    TCGA-05-4420    TCGA-05-4424 
"PIP WILD-TYPE" "PIP WILD-TYPE" "PIP WILD-TYPE" "PIP WILD-TYPE" "PIP WILD-TYPE" 
   TCGA-05-4426    TCGA-05-4427    TCGA-05-4430    TCGA-05-4432    TCGA-05-4433 
"PIP WILD-TYPE" "PIP WILD-TYPE" "PIP WILD-TYPE" "PIP WILD-TYPE" "PIP WILD-TYPE" 
   TCGA-05-4434    TCGA-05-5420    TCGA-05-5423    TCGA-05-5425    TCGA-05-5429 
"PIP WILD-TYPE" "PIP WILD-TYPE" "PIP WILD-TYPE" "PIP WILD-TYPE" "PIP WILD-TYPE" 
   TCGA-05-5715    TCGA-35-3615    TCGA-35-4122    TCGA-35-4123    TCGA-35-5375 
"PIP WILD-TYPE" "PIP WILD-TYPE" "PIP WILD-TYPE" "PIP WILD-TYPE" "PIP WILD-TYPE" 
   TCGA-38-4625    TCGA-38-4626    TCGA-38-4627    TCGA-38-4628    TCGA-38-4629 
"PIP WILD-TYPE" "PIP WILD-TYPE" "PIP WILD-TYPE" "PIP WILD-TYPE" "PIP WILD-TYPE" 
   TCGA-38-4630    TCGA-38-4631    TCGA-38-4632    TCGA-38-6178    TCGA-44-2655 
"PIP WILD-TYPE" "PIP WILD-TYPE" "PIP WILD-TYPE" "PIP WILD-TYPE" "PIP WILD-TYPE" 
   TCGA-44-2656    TCGA-44-2657    TCGA-44-2659    TCGA-44-2661    TCGA-44-2662 
"PIP WILD-TYPE" "PIP WILD-TYPE" "PIP WILD-TYPE" "PIP WILD-TYPE" "PIP WILD-TYPE" 
   TCGA-44-2665    TCGA-44-2666    TCGA-44-2668    TCGA-44-3396    TCGA-44-3398 
"PIP WILD-TYPE" "PIP WILD-TYPE" "PIP WILD-TYPE" "PIP WILD-TYPE" "PIP WILD-TYPE" 
   TCGA-44-3918    TCGA-44-3919    TCGA-44-4112    TCGA-44-5643    TCGA-44-5645 
"PIP WILD-TYPE" "PIP WILD-TYPE" "PIP WILD-TYPE" "PIP WILD-TYPE" "PIP WILD-TYPE" 
   TCGA-44-6144    TCGA-44-6145    TCGA-44-6146    TCGA-44-6147    TCGA-44-6148 
"PIP WILD-TYPE" "PIP WILD-TYPE" "PIP WILD-TYPE" "PIP WILD-TYPE" "PIP WILD-TYPE" 
   TCGA-44-6774    TCGA-44-6775    TCGA-44-6776    TCGA-44-6777    TCGA-44-6778 
"PIP WILD-TYPE" "PIP WILD-TYPE" "PIP WILD-TYPE" "PIP WILD-TYPE" "PIP WILD-TYPE" 
   TCGA-44-6779    TCGA-49-4486    TCGA-49-4487    TCGA-49-4488    TCGA-49-4490 
"PIP WILD-TYPE" "PIP WILD-TYPE" "PIP WILD-TYPE" "PIP WILD-TYPE" "PIP WILD-TYPE" 
   TCGA-49-4494    TCGA-49-4501    TCGA-49-4505    TCGA-49-4506    TCGA-49-4507 
"PIP WILD-TYPE" "PIP WILD-TYPE" "PIP WILD-TYPE" "PIP WILD-TYPE" "PIP WILD-TYPE" 
   TCGA-49-4510    TCGA-49-4512    TCGA-49-4514    TCGA-49-6742    TCGA-49-6743 
"PIP WILD-TYPE" "PIP WILD-TYPE" "PIP WILD-TYPE" "PIP WILD-TYPE" "PIP WILD-TYPE" 
   TCGA-49-6744    TCGA-49-6745    TCGA-50-5044    TCGA-50-5045    TCGA-50-5049 
"PIP WILD-TYPE" "PIP WILD-TYPE" "PIP WILD-TYPE" "PIP WILD-TYPE" "PIP WILD-TYPE" 
   TCGA-50-5051    TCGA-50-5055    TCGA-50-5066    TCGA-50-5068    TCGA-50-5072 
"PIP WILD-TYPE" "PIP WILD-TYPE" "PIP WILD-TYPE" "PIP WILD-TYPE" "PIP WILD-TYPE" 
   TCGA-50-5930    TCGA-50-5931    TCGA-50-5932    TCGA-50-5933    TCGA-50-5935 
"PIP WILD-TYPE" "PIP WILD-TYPE" "PIP WILD-TYPE" "PIP WILD-TYPE" "PIP WILD-TYPE" 
   TCGA-50-5936    TCGA-50-5939    TCGA-50-5941    TCGA-50-5942    TCGA-50-5944 
"PIP WILD-TYPE" "PIP WILD-TYPE" "PIP WILD-TYPE" "PIP WILD-TYPE" "PIP WILD-TYPE" 
   TCGA-50-5946    TCGA-50-6590    TCGA-50-6591    TCGA-50-6592    TCGA-50-6593 
"PIP WILD-TYPE" "PIP WILD-TYPE" "PIP WILD-TYPE"   "PIP MUTATED" "PIP WILD-TYPE" 
   TCGA-50-6594    TCGA-50-6595    TCGA-50-6597    TCGA-55-1592    TCGA-55-1594 
"PIP WILD-TYPE" "PIP WILD-TYPE" "PIP WILD-TYPE" "PIP WILD-TYPE" "PIP WILD-TYPE" 
   TCGA-55-1595    TCGA-55-1596    TCGA-55-5899    TCGA-55-6543    TCGA-55-6642 
"PIP WILD-TYPE" "PIP WILD-TYPE" "PIP WILD-TYPE" "PIP WILD-TYPE" "PIP WILD-TYPE" 
   TCGA-55-6712    TCGA-64-1676    TCGA-64-1677    TCGA-64-1678    TCGA-64-1680 
"PIP WILD-TYPE" "PIP WILD-TYPE" "PIP WILD-TYPE" "PIP WILD-TYPE" "PIP WILD-TYPE" 
   TCGA-64-5774    TCGA-64-5775    TCGA-64-5778    TCGA-64-5779    TCGA-64-5781 
"PIP WILD-TYPE" "PIP WILD-TYPE" "PIP WILD-TYPE" "PIP WILD-TYPE" "PIP WILD-TYPE" 
   TCGA-64-5815    TCGA-67-3770    TCGA-67-3771    TCGA-67-3772    TCGA-67-3773 
"PIP WILD-TYPE" "PIP WILD-TYPE" "PIP WILD-TYPE" "PIP WILD-TYPE" "PIP WILD-TYPE" 
   TCGA-67-3774    TCGA-67-6215    TCGA-67-6216    TCGA-67-6217    TCGA-71-6725 
"PIP WILD-TYPE" "PIP WILD-TYPE" "PIP WILD-TYPE" "PIP WILD-TYPE" "PIP WILD-TYPE" 
   TCGA-73-4658    TCGA-73-4659    TCGA-73-4662    TCGA-73-4666    TCGA-73-4668 
"PIP WILD-TYPE" "PIP WILD-TYPE" "PIP WILD-TYPE" "PIP WILD-TYPE" "PIP WILD-TYPE" 
   TCGA-73-4670    TCGA-73-4675    TCGA-73-4676    TCGA-73-4677    TCGA-91-6828 
"PIP WILD-TYPE" "PIP WILD-TYPE" "PIP WILD-TYPE" "PIP WILD-TYPE" "PIP WILD-TYPE" 
   TCGA-91-6829    TCGA-91-6831    TCGA-91-6835    TCGA-91-6836 
"PIP WILD-TYPE" "PIP WILD-TYPE" "PIP WILD-TYPE" "PIP WILD-TYPE" 
   TCGA-05-4249    TCGA-05-4250    TCGA-05-4382    TCGA-05-4384    TCGA-05-4390 
"PIP WILD-TYPE" "PIP WILD-TYPE" "PIP WILD-TYPE" "PIP WILD-TYPE" "PIP WILD-TYPE" 
   TCGA-05-4396    TCGA-05-4397    TCGA-05-4398    TCGA-05-4402    TCGA-05-4405 
  "PIP MUTATED" "PIP WILD-TYPE"   "PIP MUTATED" "PIP WILD-TYPE" "PIP WILD-TYPE" 
   TCGA-05-4415    TCGA-05-4417    TCGA-05-4418    TCGA-05-4420    TCGA-05-4424 
"PIP WILD-TYPE" "PIP WILD-TYPE" "PIP WILD-TYPE" "PIP WILD-TYPE" "PIP WILD-TYPE" 
   TCGA-05-4426    TCGA-05-4427    TCGA-05-4430    TCGA-05-4432    TCGA-05-4433 
"PIP WILD-TYPE" "PIP WILD-TYPE" "PIP WILD-TYPE" "PIP WILD-TYPE" "PIP WILD-TYPE" 
   TCGA-05-4434    TCGA-05-5420    TCGA-05-5423    TCGA-05-5425    TCGA-05-5429 
"PIP WILD-TYPE" "PIP WILD-TYPE" "PIP WILD-TYPE" "PIP WILD-TYPE" "PIP WILD-TYPE" 
   TCGA-05-5715    TCGA-35-3615    TCGA-35-4122    TCGA-35-4123    TCGA-35-5375 
"PIP WILD-TYPE" "PIP WILD-TYPE" "PIP WILD-TYPE" "PIP WILD-TYPE" "PIP WILD-TYPE" 
   TCGA-38-4625    TCGA-38-4626    TCGA-38-4627    TCGA-38-4628    TCGA-38-4629 
"PIP WILD-TYPE" "PIP WILD-TYPE" "PIP WILD-TYPE" "PIP WILD-TYPE" "PIP WILD-TYPE" 
   TCGA-38-4630    TCGA-38-4631    TCGA-38-4632    TCGA-38-6178    TCGA-44-2655 
"PIP WILD-TYPE" "PIP WILD-TYPE" "PIP WILD-TYPE" "PIP WILD-TYPE" "PIP WILD-TYPE" 
   TCGA-44-2656    TCGA-44-2657    TCGA-44-2659    TCGA-44-2661    TCGA-44-2662 
"PIP WILD-TYPE" "PIP WILD-TYPE" "PIP WILD-TYPE" "PIP WILD-TYPE" "PIP WILD-TYPE" 
   TCGA-44-2665    TCGA-44-2666    TCGA-44-2668    TCGA-44-3396    TCGA-44-3398 
"PIP WILD-TYPE" "PIP WILD-TYPE" "PIP WILD-TYPE" "PIP WILD-TYPE" "PIP WILD-TYPE" 
   TCGA-44-3918    TCGA-44-3919    TCGA-44-4112    TCGA-44-5643    TCGA-44-5645 
"PIP WILD-TYPE" "PIP WILD-TYPE" "PIP WILD-TYPE" "PIP WILD-TYPE" "PIP WILD-TYPE" 
   TCGA-44-6144    TCGA-44-6145    TCGA-44-6146    TCGA-44-6147    TCGA-44-6148 
"PIP WILD-TYPE" "PIP WILD-TYPE" "PIP WILD-TYPE" "PIP WILD-TYPE" "PIP WILD-TYPE" 
   TCGA-44-6774    TCGA-44-6775    TCGA-44-6776    TCGA-44-6777    TCGA-44-6778 
"PIP WILD-TYPE" "PIP WILD-TYPE" "PIP WILD-TYPE" "PIP WILD-TYPE" "PIP WILD-TYPE" 
   TCGA-44-6779    TCGA-49-4486    TCGA-49-4487    TCGA-49-4488    TCGA-49-4490 
"PIP WILD-TYPE" "PIP WILD-TYPE" "PIP WILD-TYPE" "PIP WILD-TYPE" "PIP WILD-TYPE" 
   TCGA-49-4494    TCGA-49-4501    TCGA-49-4505    TCGA-49-4506    TCGA-49-4507 
"PIP WILD-TYPE" "PIP WILD-TYPE" "PIP WILD-TYPE" "PIP WILD-TYPE" "PIP WILD-TYPE" 
   TCGA-49-4510    TCGA-49-4512    TCGA-49-4514    TCGA-49-6742    TCGA-49-6743 
"PIP WILD-TYPE" "PIP WILD-TYPE" "PIP WILD-TYPE" "PIP WILD-TYPE" "PIP WILD-TYPE" 
   TCGA-49-6744    TCGA-49-6745    TCGA-50-5044    TCGA-50-5045    TCGA-50-5049 
"PIP WILD-TYPE" "PIP WILD-TYPE" "PIP WILD-TYPE" "PIP WILD-TYPE" "PIP WILD-TYPE" 
   TCGA-50-5051    TCGA-50-5055    TCGA-50-5066    TCGA-50-5068    TCGA-50-5072 
"PIP WILD-TYPE" "PIP WILD-TYPE" "PIP WILD-TYPE" "PIP WILD-TYPE" "PIP WILD-TYPE" 
   TCGA-50-5930    TCGA-50-5931    TCGA-50-5932    TCGA-50-5933    TCGA-50-5935 
"PIP WILD-TYPE" "PIP WILD-TYPE" "PIP WILD-TYPE" "PIP WILD-TYPE" "PIP WILD-TYPE" 
   TCGA-50-5936    TCGA-50-5939    TCGA-50-5941    TCGA-50-5942    TCGA-50-5944 
"PIP WILD-TYPE" "PIP WILD-TYPE" "PIP WILD-TYPE" "PIP WILD-TYPE" "PIP WILD-TYPE" 
   TCGA-50-5946    TCGA-50-6590    TCGA-50-6591    TCGA-50-6592    TCGA-50-6593 
"PIP WILD-TYPE" "PIP WILD-TYPE" "PIP WILD-TYPE"   "PIP MUTATED" "PIP WILD-TYPE" 
   TCGA-50-6594    TCGA-50-6595    TCGA-50-6597    TCGA-55-1592    TCGA-55-1594 
"PIP WILD-TYPE" "PIP WILD-TYPE" "PIP WILD-TYPE" "PIP WILD-TYPE" "PIP WILD-TYPE" 
   TCGA-55-1595    TCGA-55-1596    TCGA-55-5899    TCGA-55-6543    TCGA-55-6642 
"PIP WILD-TYPE" "PIP WILD-TYPE" "PIP WILD-TYPE" "PIP WILD-TYPE" "PIP WILD-TYPE" 
   TCGA-55-6712    TCGA-64-1676    TCGA-64-1677    TCGA-64-1678    TCGA-64-1680 
"PIP WILD-TYPE" "PIP WILD-TYPE" "PIP WILD-TYPE" "PIP WILD-TYPE" "PIP WILD-TYPE" 
   TCGA-64-5774    TCGA-64-5775    TCGA-64-5778    TCGA-64-5779    TCGA-64-5781 
"PIP WILD-TYPE" "PIP WILD-TYPE" "PIP WILD-TYPE" "PIP WILD-TYPE" "PIP WILD-TYPE" 
   TCGA-64-5815    TCGA-67-3770    TCGA-67-3771    TCGA-67-3772    TCGA-67-3773 
"PIP WILD-TYPE" "PIP WILD-TYPE" "PIP WILD-TYPE" "PIP WILD-TYPE" "PIP WILD-TYPE" 
   TCGA-67-3774    TCGA-67-6215    TCGA-67-6216    TCGA-67-6217    TCGA-71-6725 
"PIP WILD-TYPE" "PIP WILD-TYPE" "PIP WILD-TYPE" "PIP WILD-TYPE" "PIP WILD-TYPE" 
   TCGA-73-4658    TCGA-73-4659    TCGA-73-4662    TCGA-73-4666    TCGA-73-4668 
"PIP WILD-TYPE" "PIP WILD-TYPE" "PIP WILD-TYPE" "PIP WILD-TYPE" "PIP WILD-TYPE" 
   TCGA-73-4670    TCGA-73-4675    TCGA-73-4676    TCGA-73-4677    TCGA-91-6828 
"PIP WILD-TYPE" "PIP WILD-TYPE" "PIP WILD-TYPE" "PIP WILD-TYPE" "PIP WILD-TYPE" 
   TCGA-91-6829    TCGA-91-6831    TCGA-91-6835    TCGA-91-6836 
"PIP WILD-TYPE" "PIP WILD-TYPE" "PIP WILD-TYPE" "PIP WILD-TYPE" 
   TCGA-05-4249    TCGA-05-4250    TCGA-05-4382    TCGA-05-4384    TCGA-05-4390 
"PIP WILD-TYPE" "PIP WILD-TYPE" "PIP WILD-TYPE" "PIP WILD-TYPE" "PIP WILD-TYPE" 
   TCGA-05-4396    TCGA-05-4397    TCGA-05-4398    TCGA-05-4402    TCGA-05-4405 
  "PIP MUTATED" "PIP WILD-TYPE"   "PIP MUTATED" "PIP WILD-TYPE" "PIP WILD-TYPE" 
   TCGA-05-4415    TCGA-05-4417    TCGA-05-4418    TCGA-05-4420    TCGA-05-4424 
"PIP WILD-TYPE" "PIP WILD-TYPE" "PIP WILD-TYPE" "PIP WILD-TYPE" "PIP WILD-TYPE" 
   TCGA-05-4426    TCGA-05-4427    TCGA-05-4430    TCGA-05-4432    TCGA-05-4433 
"PIP WILD-TYPE" "PIP WILD-TYPE" "PIP WILD-TYPE" "PIP WILD-TYPE" "PIP WILD-TYPE" 
   TCGA-05-4434    TCGA-05-5420    TCGA-05-5423    TCGA-05-5425    TCGA-05-5429 
"PIP WILD-TYPE" "PIP WILD-TYPE" "PIP WILD-TYPE" "PIP WILD-TYPE" "PIP WILD-TYPE" 
   TCGA-05-5715    TCGA-35-3615    TCGA-35-4122    TCGA-35-4123    TCGA-35-5375 
"PIP WILD-TYPE" "PIP WILD-TYPE" "PIP WILD-TYPE" "PIP WILD-TYPE" "PIP WILD-TYPE" 
   TCGA-38-4625    TCGA-38-4626    TCGA-38-4627    TCGA-38-4628    TCGA-38-4629 
"PIP WILD-TYPE" "PIP WILD-TYPE" "PIP WILD-TYPE" "PIP WILD-TYPE" "PIP WILD-TYPE" 
   TCGA-38-4630    TCGA-38-4631    TCGA-38-4632    TCGA-38-6178    TCGA-44-2655 
"PIP WILD-TYPE" "PIP WILD-TYPE" "PIP WILD-TYPE" "PIP WILD-TYPE" "PIP WILD-TYPE" 
   TCGA-44-2656    TCGA-44-2657    TCGA-44-2659    TCGA-44-2661    TCGA-44-2662 
"PIP WILD-TYPE" "PIP WILD-TYPE" "PIP WILD-TYPE" "PIP WILD-TYPE" "PIP WILD-TYPE" 
   TCGA-44-2665    TCGA-44-2666    TCGA-44-2668    TCGA-44-3396    TCGA-44-3398 
"PIP WILD-TYPE" "PIP WILD-TYPE" "PIP WILD-TYPE" "PIP WILD-TYPE" "PIP WILD-TYPE" 
   TCGA-44-3918    TCGA-44-3919    TCGA-44-4112    TCGA-44-5643    TCGA-44-5645 
"PIP WILD-TYPE" "PIP WILD-TYPE" "PIP WILD-TYPE" "PIP WILD-TYPE" "PIP WILD-TYPE" 
   TCGA-44-6144    TCGA-44-6145    TCGA-44-6146    TCGA-44-6147    TCGA-44-6148 
"PIP WILD-TYPE" "PIP WILD-TYPE" "PIP WILD-TYPE" "PIP WILD-TYPE" "PIP WILD-TYPE" 
   TCGA-44-6774    TCGA-44-6775    TCGA-44-6776    TCGA-44-6777    TCGA-44-6778 
"PIP WILD-TYPE" "PIP WILD-TYPE" "PIP WILD-TYPE" "PIP WILD-TYPE" "PIP WILD-TYPE" 
   TCGA-44-6779    TCGA-49-4486    TCGA-49-4487    TCGA-49-4488    TCGA-49-4490 
"PIP WILD-TYPE" "PIP WILD-TYPE" "PIP WILD-TYPE" "PIP WILD-TYPE" "PIP WILD-TYPE" 
   TCGA-49-4494    TCGA-49-4501    TCGA-49-4505    TCGA-49-4506    TCGA-49-4507 
"PIP WILD-TYPE" "PIP WILD-TYPE" "PIP WILD-TYPE" "PIP WILD-TYPE" "PIP WILD-TYPE" 
   TCGA-49-4510    TCGA-49-4512    TCGA-49-4514    TCGA-49-6742    TCGA-49-6743 
"PIP WILD-TYPE" "PIP WILD-TYPE" "PIP WILD-TYPE" "PIP WILD-TYPE" "PIP WILD-TYPE" 
   TCGA-49-6744    TCGA-49-6745    TCGA-50-5044    TCGA-50-5045    TCGA-50-5049 
"PIP WILD-TYPE" "PIP WILD-TYPE" "PIP WILD-TYPE" "PIP WILD-TYPE" "PIP WILD-TYPE" 
   TCGA-50-5051    TCGA-50-5055    TCGA-50-5066    TCGA-50-5068    TCGA-50-5072 
"PIP WILD-TYPE" "PIP WILD-TYPE" "PIP WILD-TYPE" "PIP WILD-TYPE" "PIP WILD-TYPE" 
   TCGA-50-5930    TCGA-50-5931    TCGA-50-5932    TCGA-50-5933    TCGA-50-5935 
"PIP WILD-TYPE" "PIP WILD-TYPE" "PIP WILD-TYPE" "PIP WILD-TYPE" "PIP WILD-TYPE" 
   TCGA-50-5936    TCGA-50-5939    TCGA-50-5941    TCGA-50-5942    TCGA-50-5944 
"PIP WILD-TYPE" "PIP WILD-TYPE" "PIP WILD-TYPE" "PIP WILD-TYPE" "PIP WILD-TYPE" 
   TCGA-50-5946    TCGA-50-6590    TCGA-50-6591    TCGA-50-6592    TCGA-50-6593 
"PIP WILD-TYPE" "PIP WILD-TYPE" "PIP WILD-TYPE"   "PIP MUTATED" "PIP WILD-TYPE" 
   TCGA-50-6594    TCGA-50-6595    TCGA-50-6597    TCGA-55-1592    TCGA-55-1594 
"PIP WILD-TYPE" "PIP WILD-TYPE" "PIP WILD-TYPE" "PIP WILD-TYPE" "PIP WILD-TYPE" 
   TCGA-55-1595    TCGA-55-1596    TCGA-55-5899    TCGA-55-6543    TCGA-55-6642 
"PIP WILD-TYPE" "PIP WILD-TYPE" "PIP WILD-TYPE" "PIP WILD-TYPE" "PIP WILD-TYPE" 
   TCGA-55-6712    TCGA-64-1676    TCGA-64-1677    TCGA-64-1678    TCGA-64-1680 
"PIP WILD-TYPE" "PIP WILD-TYPE" "PIP WILD-TYPE" "PIP WILD-TYPE" "PIP WILD-TYPE" 
   TCGA-64-5774    TCGA-64-5775    TCGA-64-5778    TCGA-64-5779    TCGA-64-5781 
"PIP WILD-TYPE" "PIP WILD-TYPE" "PIP WILD-TYPE" "PIP WILD-TYPE" "PIP WILD-TYPE" 
   TCGA-64-5815    TCGA-67-3770    TCGA-67-3771    TCGA-67-3772    TCGA-67-3773 
"PIP WILD-TYPE" "PIP WILD-TYPE" "PIP WILD-TYPE" "PIP WILD-TYPE" "PIP WILD-TYPE" 
   TCGA-67-3774    TCGA-67-6215    TCGA-67-6216    TCGA-67-6217    TCGA-71-6725 
"PIP WILD-TYPE" "PIP WILD-TYPE" "PIP WILD-TYPE" "PIP WILD-TYPE" "PIP WILD-TYPE" 
   TCGA-73-4658    TCGA-73-4659    TCGA-73-4662    TCGA-73-4666    TCGA-73-4668 
"PIP WILD-TYPE" "PIP WILD-TYPE" "PIP WILD-TYPE" "PIP WILD-TYPE" "PIP WILD-TYPE" 
   TCGA-73-4670    TCGA-73-4675    TCGA-73-4676    TCGA-73-4677    TCGA-91-6828 
"PIP WILD-TYPE" "PIP WILD-TYPE" "PIP WILD-TYPE" "PIP WILD-TYPE" "PIP WILD-TYPE" 
   TCGA-91-6829    TCGA-91-6831    TCGA-91-6835    TCGA-91-6836 
"PIP WILD-TYPE" "PIP WILD-TYPE" "PIP WILD-TYPE" "PIP WILD-TYPE" 
[1] "hr=" "1.4"
D138V2, continuous
D138V3, binary
[1] "tbl2"
               cls
clus            [,1] [,2]
  PIP MUTATED      2    3
  PIP WILD-TYPE   91   76
        clus
vv       PIP MUTATED PIP WILD-TYPE
  FEMALE           2            91
  MALE             3            76
D138V4, continuous
D138V5, multiclass
D138V6, multiclass
    clus
vv   PIP MUTATED PIP WILD-TYPE
  T1           0            41
  T2           3           105
  T3           0            14
  T4           2             6
D138V7, multiclass
       clus
vv      PIP MUTATED PIP WILD-TYPE
  N0              3            92
  N1              1            36
  N2+N3           1            34
D138V8, multiclass
    clus
vv   PIP MUTATED PIP WILD-TYPE
  M0           5           132
  M1           0             9
  MX           0            22
D138V9, multiclass
     clus
vv    PIP MUTATED PIP WILD-TYPE
  I             3            85
  II            0            33
  III           2            37
  IV            0             9
D138V10, binary
[1] "tbl2"
               cls
clus            [,1] [,2]
  PIP MUTATED      0    5
  PIP WILD-TYPE   16  151
     clus
vv    PIP MUTATED PIP WILD-TYPE
  NO            0            16
  YES           5           151
D138V11, continuous
D138V12, continuous
D138V13, multiclass
                                             clus
vv                                            PIP MUTATED PIP WILD-TYPE
  CURRENT REFORMED SMOKER FOR < OR = 15 YEARS           2            60
  CURRENT REFORMED SMOKER FOR > 15 YEARS                2            44
  CURRENT SMOKER                                        1            27
  LIFELONG NON-SMOKER                                   0            24
D138V14, continuous
[1] "Remove cluster labels:" "PIP MUTATED"           
clus
  PIP MUTATED PIP WILD-TYPE 
            2            66 
   TCGA-05-4384    TCGA-05-4390    TCGA-05-4405    TCGA-05-4415    TCGA-05-4417 
"PIP WILD-TYPE" "PIP WILD-TYPE" "PIP WILD-TYPE" "PIP WILD-TYPE" "PIP WILD-TYPE" 
   TCGA-05-4424    TCGA-05-4427    TCGA-05-4433    TCGA-05-5420    TCGA-05-5423 
"PIP WILD-TYPE" "PIP WILD-TYPE" "PIP WILD-TYPE" "PIP WILD-TYPE" "PIP WILD-TYPE" 
   TCGA-05-5425    TCGA-05-5428    TCGA-35-4122    TCGA-35-4123    TCGA-35-5375 
"PIP WILD-TYPE" "PIP WILD-TYPE" "PIP WILD-TYPE" "PIP WILD-TYPE" "PIP WILD-TYPE" 
   TCGA-38-4625    TCGA-38-4626    TCGA-44-2655    TCGA-44-2656    TCGA-44-2657 
"PIP WILD-TYPE" "PIP WILD-TYPE" "PIP WILD-TYPE" "PIP WILD-TYPE" "PIP WILD-TYPE" 
   TCGA-44-2659    TCGA-44-2662    TCGA-44-2666    TCGA-44-2668    TCGA-44-3396 
"PIP WILD-TYPE" "PIP WILD-TYPE" "PIP WILD-TYPE" "PIP WILD-TYPE" "PIP WILD-TYPE" 
   TCGA-44-3398    TCGA-44-3918    TCGA-44-4112    TCGA-44-5645    TCGA-44-6144 
"PIP WILD-TYPE" "PIP WILD-TYPE" "PIP WILD-TYPE" "PIP WILD-TYPE" "PIP WILD-TYPE" 
   TCGA-44-6145    TCGA-44-6147    TCGA-44-6148    TCGA-44-6774    TCGA-44-6775 
"PIP WILD-TYPE" "PIP WILD-TYPE" "PIP WILD-TYPE" "PIP WILD-TYPE" "PIP WILD-TYPE" 
   TCGA-44-6776    TCGA-44-6777    TCGA-44-6778    TCGA-44-6779    TCGA-49-4486 
"PIP WILD-TYPE" "PIP WILD-TYPE" "PIP WILD-TYPE" "PIP WILD-TYPE" "PIP WILD-TYPE" 
   TCGA-49-4494    TCGA-49-4505    TCGA-55-1592    TCGA-55-1594    TCGA-55-1595 
"PIP WILD-TYPE" "PIP WILD-TYPE" "PIP WILD-TYPE" "PIP WILD-TYPE" "PIP WILD-TYPE" 
   TCGA-55-1596    TCGA-55-5899    TCGA-55-6642    TCGA-55-6712    TCGA-64-1677 
"PIP WILD-TYPE" "PIP WILD-TYPE" "PIP WILD-TYPE" "PIP WILD-TYPE" "PIP WILD-TYPE" 
   TCGA-64-1678    TCGA-64-1680    TCGA-64-5774    TCGA-64-5775    TCGA-64-5778 
"PIP WILD-TYPE" "PIP WILD-TYPE" "PIP WILD-TYPE" "PIP WILD-TYPE" "PIP WILD-TYPE" 
   TCGA-64-5779    TCGA-64-5781    TCGA-73-4659    TCGA-73-4662    TCGA-73-4666 
"PIP WILD-TYPE" "PIP WILD-TYPE" "PIP WILD-TYPE" "PIP WILD-TYPE" "PIP WILD-TYPE" 
   TCGA-73-4668    TCGA-73-4670    TCGA-73-4675    TCGA-73-4676    TCGA-91-6829 
"PIP WILD-TYPE" "PIP WILD-TYPE" "PIP WILD-TYPE" "PIP WILD-TYPE" "PIP WILD-TYPE" 
   TCGA-91-6836 
"PIP WILD-TYPE" 

Clustering(139) Variable = SULT1B1 MUTATION ANALYSIS
D139V1, survival
                   sevent
clus2                0  1
  SULT1B1 MUTATED    3  4
  SULT1B1 WILD-TYPE 96 46
  SULT1B1 MUTATED SULT1B1 WILD-TYPE 
                7               142 
  SULT1B1 MUTATED SULT1B1 WILD-TYPE 
                4                46 
$`SULT1B1 MUTATED`
TCGA-05-4390 TCGA-05-4396 TCGA-05-4415 TCGA-05-4434 TCGA-38-4625 TCGA-44-6778 
       37.02         9.96         2.96        15.02        47.61        36.49 
TCGA-55-1592 
       23.05 

$`SULT1B1 WILD-TYPE`
TCGA-05-4249 TCGA-05-4250 TCGA-05-4382 TCGA-05-4384 TCGA-05-4397 TCGA-05-4398 
       38.07         3.98        19.92        14.01        24.03        47.05 
TCGA-05-4402 TCGA-05-4405 TCGA-05-4417 TCGA-05-4418 TCGA-05-4420 TCGA-05-4424 
        8.02        20.05        14.93         8.98        29.95        30.02 
TCGA-05-4426 TCGA-05-4427 TCGA-05-4430 TCGA-05-4432 TCGA-05-4433 TCGA-05-5420 
       26.01        26.01        25.02        25.02        24.00         1.02 
TCGA-05-5423 TCGA-05-5425 TCGA-05-5429 TCGA-05-5715 TCGA-35-3615 TCGA-35-4122 
        4.96         2.96         0.99         2.04         0.46         7.36 
TCGA-35-4123 TCGA-35-5375 TCGA-38-4626 TCGA-38-4627 TCGA-38-4628 TCGA-38-4629 
        5.95         8.68        85.32        37.71        49.02        28.37 
TCGA-38-4630 TCGA-38-4631 TCGA-38-4632 TCGA-38-6178 TCGA-44-2655 TCGA-44-2656 
       35.28        11.64        44.61         5.19        18.87        19.10 
TCGA-44-2657 TCGA-44-2659 TCGA-44-2661 TCGA-44-2662 TCGA-44-2665 TCGA-44-2666 
       13.15        17.39         3.39        15.78        13.15         3.19 
TCGA-44-2668 TCGA-44-3396 TCGA-44-3398 TCGA-44-3918 TCGA-44-3919 TCGA-44-4112 
        8.09        10.22         8.32         6.44         6.21         4.60 
TCGA-44-5643 TCGA-44-5645 TCGA-44-6144 TCGA-44-6145 TCGA-44-6146 TCGA-44-6147 
        3.48         6.84         0.30         3.35         9.93         7.76 
TCGA-44-6148 TCGA-44-6774 TCGA-44-6775 TCGA-44-6776 TCGA-44-6777 TCGA-44-6779 
        3.12         5.42         2.70        63.72        32.45        16.41 
TCGA-49-4486 TCGA-49-4487 TCGA-49-4488 TCGA-49-4490 TCGA-49-4494 TCGA-49-4501 
       76.21        28.11        28.57        12.66        35.54        46.72 
TCGA-49-4505 TCGA-49-4506 TCGA-49-4507 TCGA-49-4510 TCGA-49-4512 TCGA-49-4514 
       14.07        32.84         8.81        29.46        29.75        43.20 
TCGA-49-6742 TCGA-49-6743 TCGA-49-6744 TCGA-49-6745 TCGA-50-5044 TCGA-50-5045 
       15.02        12.13        12.99         4.93        20.48        71.47 
TCGA-50-5049 TCGA-50-5051 TCGA-50-5055 TCGA-50-5066 TCGA-50-5068 TCGA-50-5072 
       48.82        14.96        25.81         9.76        49.28         8.05 
TCGA-50-5930 TCGA-50-5931 TCGA-50-5932 TCGA-50-5933 TCGA-50-5935 TCGA-50-5936 
        9.27         8.78        35.87        77.88        21.47         8.45 
TCGA-50-5939 TCGA-50-5941 TCGA-50-5942 TCGA-50-5944 TCGA-50-5946 TCGA-50-6590 
       15.12         9.37         4.44        12.26        11.47        42.31 
TCGA-50-6591 TCGA-50-6592 TCGA-50-6593 TCGA-50-6594 TCGA-50-6595 TCGA-50-6597 
        3.88        25.51        11.05        12.16         6.21        33.37 
TCGA-55-1594 TCGA-55-1595 TCGA-55-1596 TCGA-55-5899 TCGA-55-6543 TCGA-55-6642 
       38.73        48.62        45.17         2.86         0.07        32.61 
TCGA-55-6712 TCGA-64-1676 TCGA-64-1677 TCGA-64-1678 TCGA-64-1680 TCGA-64-5774 
        0.79        56.81        20.65        39.09        37.02        83.84 
TCGA-64-5775 TCGA-64-5778 TCGA-64-5779 TCGA-64-5781 TCGA-64-5815 TCGA-67-3770 
        0.10        30.44        16.67        39.52         7.33         0.99 
TCGA-67-3771 TCGA-67-3772 TCGA-67-3773 TCGA-67-3774 TCGA-67-6215 TCGA-67-6216 
        1.97         0.59         2.04         0.59         0.89         0.69 
TCGA-67-6217 TCGA-71-6725 TCGA-73-4658 TCGA-73-4659 TCGA-73-4662 TCGA-73-4666 
       13.87         2.01        52.57        23.38        29.95        20.28 
TCGA-73-4668 TCGA-73-4670 TCGA-73-4675 TCGA-73-4676 TCGA-73-4677 TCGA-91-6828 
       15.35         0.46         1.32         4.01         1.25         1.22 
TCGA-91-6829 TCGA-91-6831 TCGA-91-6835 TCGA-91-6836 
       41.33         1.28         1.15         0.36 

  SULT1B1 MUTATED SULT1B1 WILD-TYPE 
             2.96              0.07 
  SULT1B1 MUTATED SULT1B1 WILD-TYPE 
            47.61             85.32 
  SULT1B1 MUTATED SULT1B1 WILD-TYPE 
            23.05             13.15 
[1] "3.0 - 47.6 (23.1)" "0.1 - 85.3 (13.2)"
       TCGA-05-4249        TCGA-05-4250        TCGA-05-4382        TCGA-05-4384 
"SULT1B1 WILD-TYPE" "SULT1B1 WILD-TYPE" "SULT1B1 WILD-TYPE" "SULT1B1 WILD-TYPE" 
       TCGA-05-4390        TCGA-05-4396        TCGA-05-4397        TCGA-05-4398 
  "SULT1B1 MUTATED"   "SULT1B1 MUTATED" "SULT1B1 WILD-TYPE" "SULT1B1 WILD-TYPE" 
       TCGA-05-4402        TCGA-05-4405        TCGA-05-4415        TCGA-05-4417 
"SULT1B1 WILD-TYPE" "SULT1B1 WILD-TYPE"   "SULT1B1 MUTATED" "SULT1B1 WILD-TYPE" 
       TCGA-05-4418        TCGA-05-4420        TCGA-05-4424        TCGA-05-4426 
"SULT1B1 WILD-TYPE" "SULT1B1 WILD-TYPE" "SULT1B1 WILD-TYPE" "SULT1B1 WILD-TYPE" 
       TCGA-05-4427        TCGA-05-4430        TCGA-05-4432        TCGA-05-4433 
"SULT1B1 WILD-TYPE" "SULT1B1 WILD-TYPE" "SULT1B1 WILD-TYPE" "SULT1B1 WILD-TYPE" 
       TCGA-05-4434        TCGA-05-5420        TCGA-05-5423        TCGA-05-5425 
  "SULT1B1 MUTATED" "SULT1B1 WILD-TYPE" "SULT1B1 WILD-TYPE" "SULT1B1 WILD-TYPE" 
       TCGA-05-5429        TCGA-05-5715        TCGA-35-3615        TCGA-35-4122 
"SULT1B1 WILD-TYPE" "SULT1B1 WILD-TYPE" "SULT1B1 WILD-TYPE" "SULT1B1 WILD-TYPE" 
       TCGA-35-4123        TCGA-35-5375        TCGA-38-4625        TCGA-38-4626 
"SULT1B1 WILD-TYPE" "SULT1B1 WILD-TYPE"   "SULT1B1 MUTATED" "SULT1B1 WILD-TYPE" 
       TCGA-38-4627        TCGA-38-4628        TCGA-38-4629        TCGA-38-4630 
"SULT1B1 WILD-TYPE" "SULT1B1 WILD-TYPE" "SULT1B1 WILD-TYPE" "SULT1B1 WILD-TYPE" 
       TCGA-38-4631        TCGA-38-4632        TCGA-38-6178        TCGA-44-2655 
"SULT1B1 WILD-TYPE" "SULT1B1 WILD-TYPE" "SULT1B1 WILD-TYPE" "SULT1B1 WILD-TYPE" 
       TCGA-44-2656        TCGA-44-2657        TCGA-44-2659        TCGA-44-2661 
"SULT1B1 WILD-TYPE" "SULT1B1 WILD-TYPE" "SULT1B1 WILD-TYPE" "SULT1B1 WILD-TYPE" 
       TCGA-44-2662        TCGA-44-2665        TCGA-44-2666        TCGA-44-2668 
"SULT1B1 WILD-TYPE" "SULT1B1 WILD-TYPE" "SULT1B1 WILD-TYPE" "SULT1B1 WILD-TYPE" 
       TCGA-44-3396        TCGA-44-3398        TCGA-44-3918        TCGA-44-3919 
"SULT1B1 WILD-TYPE" "SULT1B1 WILD-TYPE" "SULT1B1 WILD-TYPE" "SULT1B1 WILD-TYPE" 
       TCGA-44-4112        TCGA-44-5643        TCGA-44-5645        TCGA-44-6144 
"SULT1B1 WILD-TYPE" "SULT1B1 WILD-TYPE" "SULT1B1 WILD-TYPE" "SULT1B1 WILD-TYPE" 
       TCGA-44-6145        TCGA-44-6146        TCGA-44-6147        TCGA-44-6148 
"SULT1B1 WILD-TYPE" "SULT1B1 WILD-TYPE" "SULT1B1 WILD-TYPE" "SULT1B1 WILD-TYPE" 
       TCGA-44-6774        TCGA-44-6775        TCGA-44-6776        TCGA-44-6777 
"SULT1B1 WILD-TYPE" "SULT1B1 WILD-TYPE" "SULT1B1 WILD-TYPE" "SULT1B1 WILD-TYPE" 
       TCGA-44-6778        TCGA-44-6779        TCGA-49-4486        TCGA-49-4487 
  "SULT1B1 MUTATED" "SULT1B1 WILD-TYPE" "SULT1B1 WILD-TYPE" "SULT1B1 WILD-TYPE" 
       TCGA-49-4488        TCGA-49-4490        TCGA-49-4494        TCGA-49-4501 
"SULT1B1 WILD-TYPE" "SULT1B1 WILD-TYPE" "SULT1B1 WILD-TYPE" "SULT1B1 WILD-TYPE" 
       TCGA-49-4505        TCGA-49-4506        TCGA-49-4507        TCGA-49-4510 
"SULT1B1 WILD-TYPE" "SULT1B1 WILD-TYPE" "SULT1B1 WILD-TYPE" "SULT1B1 WILD-TYPE" 
       TCGA-49-4512        TCGA-49-4514        TCGA-49-6742        TCGA-49-6743 
"SULT1B1 WILD-TYPE" "SULT1B1 WILD-TYPE" "SULT1B1 WILD-TYPE" "SULT1B1 WILD-TYPE" 
       TCGA-49-6744        TCGA-49-6745        TCGA-50-5044        TCGA-50-5045 
"SULT1B1 WILD-TYPE" "SULT1B1 WILD-TYPE" "SULT1B1 WILD-TYPE" "SULT1B1 WILD-TYPE" 
       TCGA-50-5049        TCGA-50-5051        TCGA-50-5055        TCGA-50-5066 
"SULT1B1 WILD-TYPE" "SULT1B1 WILD-TYPE" "SULT1B1 WILD-TYPE" "SULT1B1 WILD-TYPE" 
       TCGA-50-5068        TCGA-50-5072        TCGA-50-5930        TCGA-50-5931 
"SULT1B1 WILD-TYPE" "SULT1B1 WILD-TYPE" "SULT1B1 WILD-TYPE" "SULT1B1 WILD-TYPE" 
       TCGA-50-5932        TCGA-50-5933        TCGA-50-5935        TCGA-50-5936 
"SULT1B1 WILD-TYPE" "SULT1B1 WILD-TYPE" "SULT1B1 WILD-TYPE" "SULT1B1 WILD-TYPE" 
       TCGA-50-5939        TCGA-50-5941        TCGA-50-5942        TCGA-50-5944 
"SULT1B1 WILD-TYPE" "SULT1B1 WILD-TYPE" "SULT1B1 WILD-TYPE" "SULT1B1 WILD-TYPE" 
       TCGA-50-5946        TCGA-50-6590        TCGA-50-6591        TCGA-50-6592 
"SULT1B1 WILD-TYPE" "SULT1B1 WILD-TYPE" "SULT1B1 WILD-TYPE" "SULT1B1 WILD-TYPE" 
       TCGA-50-6593        TCGA-50-6594        TCGA-50-6595        TCGA-50-6597 
"SULT1B1 WILD-TYPE" "SULT1B1 WILD-TYPE" "SULT1B1 WILD-TYPE" "SULT1B1 WILD-TYPE" 
       TCGA-55-1592        TCGA-55-1594        TCGA-55-1595        TCGA-55-1596 
  "SULT1B1 MUTATED" "SULT1B1 WILD-TYPE" "SULT1B1 WILD-TYPE" "SULT1B1 WILD-TYPE" 
       TCGA-55-5899        TCGA-55-6543        TCGA-55-6642        TCGA-55-6712 
"SULT1B1 WILD-TYPE" "SULT1B1 WILD-TYPE" "SULT1B1 WILD-TYPE" "SULT1B1 WILD-TYPE" 
       TCGA-64-1676        TCGA-64-1677        TCGA-64-1678        TCGA-64-1680 
"SULT1B1 WILD-TYPE" "SULT1B1 WILD-TYPE" "SULT1B1 WILD-TYPE" "SULT1B1 WILD-TYPE" 
       TCGA-64-5774        TCGA-64-5775        TCGA-64-5778        TCGA-64-5779 
"SULT1B1 WILD-TYPE" "SULT1B1 WILD-TYPE" "SULT1B1 WILD-TYPE" "SULT1B1 WILD-TYPE" 
       TCGA-64-5781        TCGA-64-5815        TCGA-67-3770        TCGA-67-3771 
"SULT1B1 WILD-TYPE" "SULT1B1 WILD-TYPE" "SULT1B1 WILD-TYPE" "SULT1B1 WILD-TYPE" 
       TCGA-67-3772        TCGA-67-3773        TCGA-67-3774        TCGA-67-6215 
"SULT1B1 WILD-TYPE" "SULT1B1 WILD-TYPE" "SULT1B1 WILD-TYPE" "SULT1B1 WILD-TYPE" 
       TCGA-67-6216        TCGA-67-6217        TCGA-71-6725        TCGA-73-4658 
"SULT1B1 WILD-TYPE" "SULT1B1 WILD-TYPE" "SULT1B1 WILD-TYPE" "SULT1B1 WILD-TYPE" 
       TCGA-73-4659        TCGA-73-4662        TCGA-73-4666        TCGA-73-4668 
"SULT1B1 WILD-TYPE" "SULT1B1 WILD-TYPE" "SULT1B1 WILD-TYPE" "SULT1B1 WILD-TYPE" 
       TCGA-73-4670        TCGA-73-4675        TCGA-73-4676        TCGA-73-4677 
"SULT1B1 WILD-TYPE" "SULT1B1 WILD-TYPE" "SULT1B1 WILD-TYPE" "SULT1B1 WILD-TYPE" 
       TCGA-91-6828        TCGA-91-6829        TCGA-91-6831        TCGA-91-6835 
"SULT1B1 WILD-TYPE" "SULT1B1 WILD-TYPE" "SULT1B1 WILD-TYPE" "SULT1B1 WILD-TYPE" 
       TCGA-91-6836 
"SULT1B1 WILD-TYPE" 
       TCGA-05-4249        TCGA-05-4250        TCGA-05-4382        TCGA-05-4384 
"SULT1B1 WILD-TYPE" "SULT1B1 WILD-TYPE" "SULT1B1 WILD-TYPE" "SULT1B1 WILD-TYPE" 
       TCGA-05-4390        TCGA-05-4396        TCGA-05-4397        TCGA-05-4398 
  "SULT1B1 MUTATED"   "SULT1B1 MUTATED" "SULT1B1 WILD-TYPE" "SULT1B1 WILD-TYPE" 
       TCGA-05-4402        TCGA-05-4405        TCGA-05-4415        TCGA-05-4417 
"SULT1B1 WILD-TYPE" "SULT1B1 WILD-TYPE"   "SULT1B1 MUTATED" "SULT1B1 WILD-TYPE" 
       TCGA-05-4418        TCGA-05-4420        TCGA-05-4424        TCGA-05-4426 
"SULT1B1 WILD-TYPE" "SULT1B1 WILD-TYPE" "SULT1B1 WILD-TYPE" "SULT1B1 WILD-TYPE" 
       TCGA-05-4427        TCGA-05-4430        TCGA-05-4432        TCGA-05-4433 
"SULT1B1 WILD-TYPE" "SULT1B1 WILD-TYPE" "SULT1B1 WILD-TYPE" "SULT1B1 WILD-TYPE" 
       TCGA-05-4434        TCGA-05-5420        TCGA-05-5423        TCGA-05-5425 
  "SULT1B1 MUTATED" "SULT1B1 WILD-TYPE" "SULT1B1 WILD-TYPE" "SULT1B1 WILD-TYPE" 
       TCGA-05-5429        TCGA-05-5715        TCGA-35-3615        TCGA-35-4122 
"SULT1B1 WILD-TYPE" "SULT1B1 WILD-TYPE" "SULT1B1 WILD-TYPE" "SULT1B1 WILD-TYPE" 
       TCGA-35-4123        TCGA-35-5375        TCGA-38-4625        TCGA-38-4626 
"SULT1B1 WILD-TYPE" "SULT1B1 WILD-TYPE"   "SULT1B1 MUTATED" "SULT1B1 WILD-TYPE" 
       TCGA-38-4627        TCGA-38-4628        TCGA-38-4629        TCGA-38-4630 
"SULT1B1 WILD-TYPE" "SULT1B1 WILD-TYPE" "SULT1B1 WILD-TYPE" "SULT1B1 WILD-TYPE" 
       TCGA-38-4631        TCGA-38-4632        TCGA-38-6178        TCGA-44-2655 
"SULT1B1 WILD-TYPE" "SULT1B1 WILD-TYPE" "SULT1B1 WILD-TYPE" "SULT1B1 WILD-TYPE" 
       TCGA-44-2656        TCGA-44-2657        TCGA-44-2659        TCGA-44-2661 
"SULT1B1 WILD-TYPE" "SULT1B1 WILD-TYPE" "SULT1B1 WILD-TYPE" "SULT1B1 WILD-TYPE" 
       TCGA-44-2662        TCGA-44-2665        TCGA-44-2666        TCGA-44-2668 
"SULT1B1 WILD-TYPE" "SULT1B1 WILD-TYPE" "SULT1B1 WILD-TYPE" "SULT1B1 WILD-TYPE" 
       TCGA-44-3396        TCGA-44-3398        TCGA-44-3918        TCGA-44-3919 
"SULT1B1 WILD-TYPE" "SULT1B1 WILD-TYPE" "SULT1B1 WILD-TYPE" "SULT1B1 WILD-TYPE" 
       TCGA-44-4112        TCGA-44-5643        TCGA-44-5645        TCGA-44-6144 
"SULT1B1 WILD-TYPE" "SULT1B1 WILD-TYPE" "SULT1B1 WILD-TYPE" "SULT1B1 WILD-TYPE" 
       TCGA-44-6145        TCGA-44-6146        TCGA-44-6147        TCGA-44-6148 
"SULT1B1 WILD-TYPE" "SULT1B1 WILD-TYPE" "SULT1B1 WILD-TYPE" "SULT1B1 WILD-TYPE" 
       TCGA-44-6774        TCGA-44-6775        TCGA-44-6776        TCGA-44-6777 
"SULT1B1 WILD-TYPE" "SULT1B1 WILD-TYPE" "SULT1B1 WILD-TYPE" "SULT1B1 WILD-TYPE" 
       TCGA-44-6778        TCGA-44-6779        TCGA-49-4486        TCGA-49-4487 
  "SULT1B1 MUTATED" "SULT1B1 WILD-TYPE" "SULT1B1 WILD-TYPE" "SULT1B1 WILD-TYPE" 
       TCGA-49-4488        TCGA-49-4490        TCGA-49-4494        TCGA-49-4501 
"SULT1B1 WILD-TYPE" "SULT1B1 WILD-TYPE" "SULT1B1 WILD-TYPE" "SULT1B1 WILD-TYPE" 
       TCGA-49-4505        TCGA-49-4506        TCGA-49-4507        TCGA-49-4510 
"SULT1B1 WILD-TYPE" "SULT1B1 WILD-TYPE" "SULT1B1 WILD-TYPE" "SULT1B1 WILD-TYPE" 
       TCGA-49-4512        TCGA-49-4514        TCGA-49-6742        TCGA-49-6743 
"SULT1B1 WILD-TYPE" "SULT1B1 WILD-TYPE" "SULT1B1 WILD-TYPE" "SULT1B1 WILD-TYPE" 
       TCGA-49-6744        TCGA-49-6745        TCGA-50-5044        TCGA-50-5045 
"SULT1B1 WILD-TYPE" "SULT1B1 WILD-TYPE" "SULT1B1 WILD-TYPE" "SULT1B1 WILD-TYPE" 
       TCGA-50-5049        TCGA-50-5051        TCGA-50-5055        TCGA-50-5066 
"SULT1B1 WILD-TYPE" "SULT1B1 WILD-TYPE" "SULT1B1 WILD-TYPE" "SULT1B1 WILD-TYPE" 
       TCGA-50-5068        TCGA-50-5072        TCGA-50-5930        TCGA-50-5931 
"SULT1B1 WILD-TYPE" "SULT1B1 WILD-TYPE" "SULT1B1 WILD-TYPE" "SULT1B1 WILD-TYPE" 
       TCGA-50-5932        TCGA-50-5933        TCGA-50-5935        TCGA-50-5936 
"SULT1B1 WILD-TYPE" "SULT1B1 WILD-TYPE" "SULT1B1 WILD-TYPE" "SULT1B1 WILD-TYPE" 
       TCGA-50-5939        TCGA-50-5941        TCGA-50-5942        TCGA-50-5944 
"SULT1B1 WILD-TYPE" "SULT1B1 WILD-TYPE" "SULT1B1 WILD-TYPE" "SULT1B1 WILD-TYPE" 
       TCGA-50-5946        TCGA-50-6590        TCGA-50-6591        TCGA-50-6592 
"SULT1B1 WILD-TYPE" "SULT1B1 WILD-TYPE" "SULT1B1 WILD-TYPE" "SULT1B1 WILD-TYPE" 
       TCGA-50-6593        TCGA-50-6594        TCGA-50-6595        TCGA-50-6597 
"SULT1B1 WILD-TYPE" "SULT1B1 WILD-TYPE" "SULT1B1 WILD-TYPE" "SULT1B1 WILD-TYPE" 
       TCGA-55-1592        TCGA-55-1594        TCGA-55-1595        TCGA-55-1596 
  "SULT1B1 MUTATED" "SULT1B1 WILD-TYPE" "SULT1B1 WILD-TYPE" "SULT1B1 WILD-TYPE" 
       TCGA-55-5899        TCGA-55-6543        TCGA-55-6642        TCGA-55-6712 
"SULT1B1 WILD-TYPE" "SULT1B1 WILD-TYPE" "SULT1B1 WILD-TYPE" "SULT1B1 WILD-TYPE" 
       TCGA-64-1676        TCGA-64-1677        TCGA-64-1678        TCGA-64-1680 
"SULT1B1 WILD-TYPE" "SULT1B1 WILD-TYPE" "SULT1B1 WILD-TYPE" "SULT1B1 WILD-TYPE" 
       TCGA-64-5774        TCGA-64-5775        TCGA-64-5778        TCGA-64-5779 
"SULT1B1 WILD-TYPE" "SULT1B1 WILD-TYPE" "SULT1B1 WILD-TYPE" "SULT1B1 WILD-TYPE" 
       TCGA-64-5781        TCGA-64-5815        TCGA-67-3770        TCGA-67-3771 
"SULT1B1 WILD-TYPE" "SULT1B1 WILD-TYPE" "SULT1B1 WILD-TYPE" "SULT1B1 WILD-TYPE" 
       TCGA-67-3772        TCGA-67-3773        TCGA-67-3774        TCGA-67-6215 
"SULT1B1 WILD-TYPE" "SULT1B1 WILD-TYPE" "SULT1B1 WILD-TYPE" "SULT1B1 WILD-TYPE" 
       TCGA-67-6216        TCGA-67-6217        TCGA-71-6725        TCGA-73-4658 
"SULT1B1 WILD-TYPE" "SULT1B1 WILD-TYPE" "SULT1B1 WILD-TYPE" "SULT1B1 WILD-TYPE" 
       TCGA-73-4659        TCGA-73-4662        TCGA-73-4666        TCGA-73-4668 
"SULT1B1 WILD-TYPE" "SULT1B1 WILD-TYPE" "SULT1B1 WILD-TYPE" "SULT1B1 WILD-TYPE" 
       TCGA-73-4670        TCGA-73-4675        TCGA-73-4676        TCGA-73-4677 
"SULT1B1 WILD-TYPE" "SULT1B1 WILD-TYPE" "SULT1B1 WILD-TYPE" "SULT1B1 WILD-TYPE" 
       TCGA-91-6828        TCGA-91-6829        TCGA-91-6831        TCGA-91-6835 
"SULT1B1 WILD-TYPE" "SULT1B1 WILD-TYPE" "SULT1B1 WILD-TYPE" "SULT1B1 WILD-TYPE" 
       TCGA-91-6836 
"SULT1B1 WILD-TYPE" 
       TCGA-05-4249        TCGA-05-4250        TCGA-05-4382        TCGA-05-4384 
"SULT1B1 WILD-TYPE" "SULT1B1 WILD-TYPE" "SULT1B1 WILD-TYPE" "SULT1B1 WILD-TYPE" 
       TCGA-05-4390        TCGA-05-4396        TCGA-05-4397        TCGA-05-4398 
  "SULT1B1 MUTATED"   "SULT1B1 MUTATED" "SULT1B1 WILD-TYPE" "SULT1B1 WILD-TYPE" 
       TCGA-05-4402        TCGA-05-4405        TCGA-05-4415        TCGA-05-4417 
"SULT1B1 WILD-TYPE" "SULT1B1 WILD-TYPE"   "SULT1B1 MUTATED" "SULT1B1 WILD-TYPE" 
       TCGA-05-4418        TCGA-05-4420        TCGA-05-4424        TCGA-05-4426 
"SULT1B1 WILD-TYPE" "SULT1B1 WILD-TYPE" "SULT1B1 WILD-TYPE" "SULT1B1 WILD-TYPE" 
       TCGA-05-4427        TCGA-05-4430        TCGA-05-4432        TCGA-05-4433 
"SULT1B1 WILD-TYPE" "SULT1B1 WILD-TYPE" "SULT1B1 WILD-TYPE" "SULT1B1 WILD-TYPE" 
       TCGA-05-4434        TCGA-05-5420        TCGA-05-5423        TCGA-05-5425 
  "SULT1B1 MUTATED" "SULT1B1 WILD-TYPE" "SULT1B1 WILD-TYPE" "SULT1B1 WILD-TYPE" 
       TCGA-05-5429        TCGA-05-5715        TCGA-35-3615        TCGA-35-4122 
"SULT1B1 WILD-TYPE" "SULT1B1 WILD-TYPE" "SULT1B1 WILD-TYPE" "SULT1B1 WILD-TYPE" 
       TCGA-35-4123        TCGA-35-5375        TCGA-38-4625        TCGA-38-4626 
"SULT1B1 WILD-TYPE" "SULT1B1 WILD-TYPE"   "SULT1B1 MUTATED" "SULT1B1 WILD-TYPE" 
       TCGA-38-4627        TCGA-38-4628        TCGA-38-4629        TCGA-38-4630 
"SULT1B1 WILD-TYPE" "SULT1B1 WILD-TYPE" "SULT1B1 WILD-TYPE" "SULT1B1 WILD-TYPE" 
       TCGA-38-4631        TCGA-38-4632        TCGA-38-6178        TCGA-44-2655 
"SULT1B1 WILD-TYPE" "SULT1B1 WILD-TYPE" "SULT1B1 WILD-TYPE" "SULT1B1 WILD-TYPE" 
       TCGA-44-2656        TCGA-44-2657        TCGA-44-2659        TCGA-44-2661 
"SULT1B1 WILD-TYPE" "SULT1B1 WILD-TYPE" "SULT1B1 WILD-TYPE" "SULT1B1 WILD-TYPE" 
       TCGA-44-2662        TCGA-44-2665        TCGA-44-2666        TCGA-44-2668 
"SULT1B1 WILD-TYPE" "SULT1B1 WILD-TYPE" "SULT1B1 WILD-TYPE" "SULT1B1 WILD-TYPE" 
       TCGA-44-3396        TCGA-44-3398        TCGA-44-3918        TCGA-44-3919 
"SULT1B1 WILD-TYPE" "SULT1B1 WILD-TYPE" "SULT1B1 WILD-TYPE" "SULT1B1 WILD-TYPE" 
       TCGA-44-4112        TCGA-44-5643        TCGA-44-5645        TCGA-44-6144 
"SULT1B1 WILD-TYPE" "SULT1B1 WILD-TYPE" "SULT1B1 WILD-TYPE" "SULT1B1 WILD-TYPE" 
       TCGA-44-6145        TCGA-44-6146        TCGA-44-6147        TCGA-44-6148 
"SULT1B1 WILD-TYPE" "SULT1B1 WILD-TYPE" "SULT1B1 WILD-TYPE" "SULT1B1 WILD-TYPE" 
       TCGA-44-6774        TCGA-44-6775        TCGA-44-6776        TCGA-44-6777 
"SULT1B1 WILD-TYPE" "SULT1B1 WILD-TYPE" "SULT1B1 WILD-TYPE" "SULT1B1 WILD-TYPE" 
       TCGA-44-6778        TCGA-44-6779        TCGA-49-4486        TCGA-49-4487 
  "SULT1B1 MUTATED" "SULT1B1 WILD-TYPE" "SULT1B1 WILD-TYPE" "SULT1B1 WILD-TYPE" 
       TCGA-49-4488        TCGA-49-4490        TCGA-49-4494        TCGA-49-4501 
"SULT1B1 WILD-TYPE" "SULT1B1 WILD-TYPE" "SULT1B1 WILD-TYPE" "SULT1B1 WILD-TYPE" 
       TCGA-49-4505        TCGA-49-4506        TCGA-49-4507        TCGA-49-4510 
"SULT1B1 WILD-TYPE" "SULT1B1 WILD-TYPE" "SULT1B1 WILD-TYPE" "SULT1B1 WILD-TYPE" 
       TCGA-49-4512        TCGA-49-4514        TCGA-49-6742        TCGA-49-6743 
"SULT1B1 WILD-TYPE" "SULT1B1 WILD-TYPE" "SULT1B1 WILD-TYPE" "SULT1B1 WILD-TYPE" 
       TCGA-49-6744        TCGA-49-6745        TCGA-50-5044        TCGA-50-5045 
"SULT1B1 WILD-TYPE" "SULT1B1 WILD-TYPE" "SULT1B1 WILD-TYPE" "SULT1B1 WILD-TYPE" 
       TCGA-50-5049        TCGA-50-5051        TCGA-50-5055        TCGA-50-5066 
"SULT1B1 WILD-TYPE" "SULT1B1 WILD-TYPE" "SULT1B1 WILD-TYPE" "SULT1B1 WILD-TYPE" 
       TCGA-50-5068        TCGA-50-5072        TCGA-50-5930        TCGA-50-5931 
"SULT1B1 WILD-TYPE" "SULT1B1 WILD-TYPE" "SULT1B1 WILD-TYPE" "SULT1B1 WILD-TYPE" 
       TCGA-50-5932        TCGA-50-5933        TCGA-50-5935        TCGA-50-5936 
"SULT1B1 WILD-TYPE" "SULT1B1 WILD-TYPE" "SULT1B1 WILD-TYPE" "SULT1B1 WILD-TYPE" 
       TCGA-50-5939        TCGA-50-5941        TCGA-50-5942        TCGA-50-5944 
"SULT1B1 WILD-TYPE" "SULT1B1 WILD-TYPE" "SULT1B1 WILD-TYPE" "SULT1B1 WILD-TYPE" 
       TCGA-50-5946        TCGA-50-6590        TCGA-50-6591        TCGA-50-6592 
"SULT1B1 WILD-TYPE" "SULT1B1 WILD-TYPE" "SULT1B1 WILD-TYPE" "SULT1B1 WILD-TYPE" 
       TCGA-50-6593        TCGA-50-6594        TCGA-50-6595        TCGA-50-6597 
"SULT1B1 WILD-TYPE" "SULT1B1 WILD-TYPE" "SULT1B1 WILD-TYPE" "SULT1B1 WILD-TYPE" 
       TCGA-55-1592        TCGA-55-1594        TCGA-55-1595        TCGA-55-1596 
  "SULT1B1 MUTATED" "SULT1B1 WILD-TYPE" "SULT1B1 WILD-TYPE" "SULT1B1 WILD-TYPE" 
       TCGA-55-5899        TCGA-55-6543        TCGA-55-6642        TCGA-55-6712 
"SULT1B1 WILD-TYPE" "SULT1B1 WILD-TYPE" "SULT1B1 WILD-TYPE" "SULT1B1 WILD-TYPE" 
       TCGA-64-1676        TCGA-64-1677        TCGA-64-1678        TCGA-64-1680 
"SULT1B1 WILD-TYPE" "SULT1B1 WILD-TYPE" "SULT1B1 WILD-TYPE" "SULT1B1 WILD-TYPE" 
       TCGA-64-5774        TCGA-64-5775        TCGA-64-5778        TCGA-64-5779 
"SULT1B1 WILD-TYPE" "SULT1B1 WILD-TYPE" "SULT1B1 WILD-TYPE" "SULT1B1 WILD-TYPE" 
       TCGA-64-5781        TCGA-64-5815        TCGA-67-3770        TCGA-67-3771 
"SULT1B1 WILD-TYPE" "SULT1B1 WILD-TYPE" "SULT1B1 WILD-TYPE" "SULT1B1 WILD-TYPE" 
       TCGA-67-3772        TCGA-67-3773        TCGA-67-3774        TCGA-67-6215 
"SULT1B1 WILD-TYPE" "SULT1B1 WILD-TYPE" "SULT1B1 WILD-TYPE" "SULT1B1 WILD-TYPE" 
       TCGA-67-6216        TCGA-67-6217        TCGA-71-6725        TCGA-73-4658 
"SULT1B1 WILD-TYPE" "SULT1B1 WILD-TYPE" "SULT1B1 WILD-TYPE" "SULT1B1 WILD-TYPE" 
       TCGA-73-4659        TCGA-73-4662        TCGA-73-4666        TCGA-73-4668 
"SULT1B1 WILD-TYPE" "SULT1B1 WILD-TYPE" "SULT1B1 WILD-TYPE" "SULT1B1 WILD-TYPE" 
       TCGA-73-4670        TCGA-73-4675        TCGA-73-4676        TCGA-73-4677 
"SULT1B1 WILD-TYPE" "SULT1B1 WILD-TYPE" "SULT1B1 WILD-TYPE" "SULT1B1 WILD-TYPE" 
       TCGA-91-6828        TCGA-91-6829        TCGA-91-6831        TCGA-91-6835 
"SULT1B1 WILD-TYPE" "SULT1B1 WILD-TYPE" "SULT1B1 WILD-TYPE" "SULT1B1 WILD-TYPE" 
       TCGA-91-6836 
"SULT1B1 WILD-TYPE" 
[1] "hr=" "1.4"
D139V2, continuous
D139V3, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  SULT1B1 MUTATED      3    4
  SULT1B1 WILD-TYPE   90   75
        clus
vv       SULT1B1 MUTATED SULT1B1 WILD-TYPE
  FEMALE               3                90
  MALE                 4                75
D139V4, continuous
D139V5, multiclass
D139V6, multiclass
    clus
vv   SULT1B1 MUTATED SULT1B1 WILD-TYPE
  T1               1                40
  T2               3               105
  T3               0                14
  T4               3                 5
D139V7, multiclass
       clus
vv      SULT1B1 MUTATED SULT1B1 WILD-TYPE
  N0                  4                91
  N1                  2                35
  N2+N3               1                34
D139V8, multiclass
    clus
vv   SULT1B1 MUTATED SULT1B1 WILD-TYPE
  M0               5               132
  M1               1                 8
  MX               1                21
D139V9, multiclass
     clus
vv    SULT1B1 MUTATED SULT1B1 WILD-TYPE
  I                 4                84
  II                0                33
  III               2                37
  IV                1                 8
D139V10, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  SULT1B1 MUTATED      0    7
  SULT1B1 WILD-TYPE   16  149
     clus
vv    SULT1B1 MUTATED SULT1B1 WILD-TYPE
  NO                0                16
  YES               7               149
D139V11, continuous
D139V12, continuous
D139V13, multiclass
                                             clus
vv                                            SULT1B1 MUTATED SULT1B1 WILD-TYPE
  CURRENT REFORMED SMOKER FOR < OR = 15 YEARS               4                58
  CURRENT REFORMED SMOKER FOR > 15 YEARS                    1                45
  CURRENT SMOKER                                            2                26
  LIFELONG NON-SMOKER                                       0                24
D139V14, continuous

Clustering(140) Variable = GNG2 MUTATION ANALYSIS
D140V1, survival
                sevent
clus2             0  1
  GNG2 MUTATED    2  2
  GNG2 WILD-TYPE 97 48
  GNG2 MUTATED GNG2 WILD-TYPE 
             4            145 
  GNG2 MUTATED GNG2 WILD-TYPE 
             2             48 
$`GNG2 MUTATED`
TCGA-05-5425 TCGA-38-4631 TCGA-49-4514 TCGA-55-1592 
        2.96        11.64        43.20        23.05 

$`GNG2 WILD-TYPE`
TCGA-05-4249 TCGA-05-4250 TCGA-05-4382 TCGA-05-4384 TCGA-05-4390 TCGA-05-4396 
       38.07         3.98        19.92        14.01        37.02         9.96 
TCGA-05-4397 TCGA-05-4398 TCGA-05-4402 TCGA-05-4405 TCGA-05-4415 TCGA-05-4417 
       24.03        47.05         8.02        20.05         2.96        14.93 
TCGA-05-4418 TCGA-05-4420 TCGA-05-4424 TCGA-05-4426 TCGA-05-4427 TCGA-05-4430 
        8.98        29.95        30.02        26.01        26.01        25.02 
TCGA-05-4432 TCGA-05-4433 TCGA-05-4434 TCGA-05-5420 TCGA-05-5423 TCGA-05-5429 
       25.02        24.00        15.02         1.02         4.96         0.99 
TCGA-05-5715 TCGA-35-3615 TCGA-35-4122 TCGA-35-4123 TCGA-35-5375 TCGA-38-4625 
        2.04         0.46         7.36         5.95         8.68        47.61 
TCGA-38-4626 TCGA-38-4627 TCGA-38-4628 TCGA-38-4629 TCGA-38-4630 TCGA-38-4632 
       85.32        37.71        49.02        28.37        35.28        44.61 
TCGA-38-6178 TCGA-44-2655 TCGA-44-2656 TCGA-44-2657 TCGA-44-2659 TCGA-44-2661 
        5.19        18.87        19.10        13.15        17.39         3.39 
TCGA-44-2662 TCGA-44-2665 TCGA-44-2666 TCGA-44-2668 TCGA-44-3396 TCGA-44-3398 
       15.78        13.15         3.19         8.09        10.22         8.32 
TCGA-44-3918 TCGA-44-3919 TCGA-44-4112 TCGA-44-5643 TCGA-44-5645 TCGA-44-6144 
        6.44         6.21         4.60         3.48         6.84         0.30 
TCGA-44-6145 TCGA-44-6146 TCGA-44-6147 TCGA-44-6148 TCGA-44-6774 TCGA-44-6775 
        3.35         9.93         7.76         3.12         5.42         2.70 
TCGA-44-6776 TCGA-44-6777 TCGA-44-6778 TCGA-44-6779 TCGA-49-4486 TCGA-49-4487 
       63.72        32.45        36.49        16.41        76.21        28.11 
TCGA-49-4488 TCGA-49-4490 TCGA-49-4494 TCGA-49-4501 TCGA-49-4505 TCGA-49-4506 
       28.57        12.66        35.54        46.72        14.07        32.84 
TCGA-49-4507 TCGA-49-4510 TCGA-49-4512 TCGA-49-6742 TCGA-49-6743 TCGA-49-6744 
        8.81        29.46        29.75        15.02        12.13        12.99 
TCGA-49-6745 TCGA-50-5044 TCGA-50-5045 TCGA-50-5049 TCGA-50-5051 TCGA-50-5055 
        4.93        20.48        71.47        48.82        14.96        25.81 
TCGA-50-5066 TCGA-50-5068 TCGA-50-5072 TCGA-50-5930 TCGA-50-5931 TCGA-50-5932 
        9.76        49.28         8.05         9.27         8.78        35.87 
TCGA-50-5933 TCGA-50-5935 TCGA-50-5936 TCGA-50-5939 TCGA-50-5941 TCGA-50-5942 
       77.88        21.47         8.45        15.12         9.37         4.44 
TCGA-50-5944 TCGA-50-5946 TCGA-50-6590 TCGA-50-6591 TCGA-50-6592 TCGA-50-6593 
       12.26        11.47        42.31         3.88        25.51        11.05 
TCGA-50-6594 TCGA-50-6595 TCGA-50-6597 TCGA-55-1594 TCGA-55-1595 TCGA-55-1596 
       12.16         6.21        33.37        38.73        48.62        45.17 
TCGA-55-5899 TCGA-55-6543 TCGA-55-6642 TCGA-55-6712 TCGA-64-1676 TCGA-64-1677 
        2.86         0.07        32.61         0.79        56.81        20.65 
TCGA-64-1678 TCGA-64-1680 TCGA-64-5774 TCGA-64-5775 TCGA-64-5778 TCGA-64-5779 
       39.09        37.02        83.84         0.10        30.44        16.67 
TCGA-64-5781 TCGA-64-5815 TCGA-67-3770 TCGA-67-3771 TCGA-67-3772 TCGA-67-3773 
       39.52         7.33         0.99         1.97         0.59         2.04 
TCGA-67-3774 TCGA-67-6215 TCGA-67-6216 TCGA-67-6217 TCGA-71-6725 TCGA-73-4658 
        0.59         0.89         0.69        13.87         2.01        52.57 
TCGA-73-4659 TCGA-73-4662 TCGA-73-4666 TCGA-73-4668 TCGA-73-4670 TCGA-73-4675 
       23.38        29.95        20.28        15.35         0.46         1.32 
TCGA-73-4676 TCGA-73-4677 TCGA-91-6828 TCGA-91-6829 TCGA-91-6831 TCGA-91-6835 
        4.01         1.25         1.22        41.33         1.28         1.15 
TCGA-91-6836 
        0.36 

  GNG2 MUTATED GNG2 WILD-TYPE 
          2.96           0.07 
  GNG2 MUTATED GNG2 WILD-TYPE 
         43.20          85.32 
  GNG2 MUTATED GNG2 WILD-TYPE 
        17.345         13.870 
[1] "3.0 - 43.2 (17.3)" "0.1 - 85.3 (13.9)"
    TCGA-05-4249     TCGA-05-4250     TCGA-05-4382     TCGA-05-4384 
"GNG2 WILD-TYPE" "GNG2 WILD-TYPE" "GNG2 WILD-TYPE" "GNG2 WILD-TYPE" 
    TCGA-05-4390     TCGA-05-4396     TCGA-05-4397     TCGA-05-4398 
"GNG2 WILD-TYPE" "GNG2 WILD-TYPE" "GNG2 WILD-TYPE" "GNG2 WILD-TYPE" 
    TCGA-05-4402     TCGA-05-4405     TCGA-05-4415     TCGA-05-4417 
"GNG2 WILD-TYPE" "GNG2 WILD-TYPE" "GNG2 WILD-TYPE" "GNG2 WILD-TYPE" 
    TCGA-05-4418     TCGA-05-4420     TCGA-05-4424     TCGA-05-4426 
"GNG2 WILD-TYPE" "GNG2 WILD-TYPE" "GNG2 WILD-TYPE" "GNG2 WILD-TYPE" 
    TCGA-05-4427     TCGA-05-4430     TCGA-05-4432     TCGA-05-4433 
"GNG2 WILD-TYPE" "GNG2 WILD-TYPE" "GNG2 WILD-TYPE" "GNG2 WILD-TYPE" 
    TCGA-05-4434     TCGA-05-5420     TCGA-05-5423     TCGA-05-5425 
"GNG2 WILD-TYPE" "GNG2 WILD-TYPE" "GNG2 WILD-TYPE"   "GNG2 MUTATED" 
    TCGA-05-5429     TCGA-05-5715     TCGA-35-3615     TCGA-35-4122 
"GNG2 WILD-TYPE" "GNG2 WILD-TYPE" "GNG2 WILD-TYPE" "GNG2 WILD-TYPE" 
    TCGA-35-4123     TCGA-35-5375     TCGA-38-4625     TCGA-38-4626 
"GNG2 WILD-TYPE" "GNG2 WILD-TYPE" "GNG2 WILD-TYPE" "GNG2 WILD-TYPE" 
    TCGA-38-4627     TCGA-38-4628     TCGA-38-4629     TCGA-38-4630 
"GNG2 WILD-TYPE" "GNG2 WILD-TYPE" "GNG2 WILD-TYPE" "GNG2 WILD-TYPE" 
    TCGA-38-4631     TCGA-38-4632     TCGA-38-6178     TCGA-44-2655 
  "GNG2 MUTATED" "GNG2 WILD-TYPE" "GNG2 WILD-TYPE" "GNG2 WILD-TYPE" 
    TCGA-44-2656     TCGA-44-2657     TCGA-44-2659     TCGA-44-2661 
"GNG2 WILD-TYPE" "GNG2 WILD-TYPE" "GNG2 WILD-TYPE" "GNG2 WILD-TYPE" 
    TCGA-44-2662     TCGA-44-2665     TCGA-44-2666     TCGA-44-2668 
"GNG2 WILD-TYPE" "GNG2 WILD-TYPE" "GNG2 WILD-TYPE" "GNG2 WILD-TYPE" 
    TCGA-44-3396     TCGA-44-3398     TCGA-44-3918     TCGA-44-3919 
"GNG2 WILD-TYPE" "GNG2 WILD-TYPE" "GNG2 WILD-TYPE" "GNG2 WILD-TYPE" 
    TCGA-44-4112     TCGA-44-5643     TCGA-44-5645     TCGA-44-6144 
"GNG2 WILD-TYPE" "GNG2 WILD-TYPE" "GNG2 WILD-TYPE" "GNG2 WILD-TYPE" 
    TCGA-44-6145     TCGA-44-6146     TCGA-44-6147     TCGA-44-6148 
"GNG2 WILD-TYPE" "GNG2 WILD-TYPE" "GNG2 WILD-TYPE" "GNG2 WILD-TYPE" 
    TCGA-44-6774     TCGA-44-6775     TCGA-44-6776     TCGA-44-6777 
"GNG2 WILD-TYPE" "GNG2 WILD-TYPE" "GNG2 WILD-TYPE" "GNG2 WILD-TYPE" 
    TCGA-44-6778     TCGA-44-6779     TCGA-49-4486     TCGA-49-4487 
"GNG2 WILD-TYPE" "GNG2 WILD-TYPE" "GNG2 WILD-TYPE" "GNG2 WILD-TYPE" 
    TCGA-49-4488     TCGA-49-4490     TCGA-49-4494     TCGA-49-4501 
"GNG2 WILD-TYPE" "GNG2 WILD-TYPE" "GNG2 WILD-TYPE" "GNG2 WILD-TYPE" 
    TCGA-49-4505     TCGA-49-4506     TCGA-49-4507     TCGA-49-4510 
"GNG2 WILD-TYPE" "GNG2 WILD-TYPE" "GNG2 WILD-TYPE" "GNG2 WILD-TYPE" 
    TCGA-49-4512     TCGA-49-4514     TCGA-49-6742     TCGA-49-6743 
"GNG2 WILD-TYPE"   "GNG2 MUTATED" "GNG2 WILD-TYPE" "GNG2 WILD-TYPE" 
    TCGA-49-6744     TCGA-49-6745     TCGA-50-5044     TCGA-50-5045 
"GNG2 WILD-TYPE" "GNG2 WILD-TYPE" "GNG2 WILD-TYPE" "GNG2 WILD-TYPE" 
    TCGA-50-5049     TCGA-50-5051     TCGA-50-5055     TCGA-50-5066 
"GNG2 WILD-TYPE" "GNG2 WILD-TYPE" "GNG2 WILD-TYPE" "GNG2 WILD-TYPE" 
    TCGA-50-5068     TCGA-50-5072     TCGA-50-5930     TCGA-50-5931 
"GNG2 WILD-TYPE" "GNG2 WILD-TYPE" "GNG2 WILD-TYPE" "GNG2 WILD-TYPE" 
    TCGA-50-5932     TCGA-50-5933     TCGA-50-5935     TCGA-50-5936 
"GNG2 WILD-TYPE" "GNG2 WILD-TYPE" "GNG2 WILD-TYPE" "GNG2 WILD-TYPE" 
    TCGA-50-5939     TCGA-50-5941     TCGA-50-5942     TCGA-50-5944 
"GNG2 WILD-TYPE" "GNG2 WILD-TYPE" "GNG2 WILD-TYPE" "GNG2 WILD-TYPE" 
    TCGA-50-5946     TCGA-50-6590     TCGA-50-6591     TCGA-50-6592 
"GNG2 WILD-TYPE" "GNG2 WILD-TYPE" "GNG2 WILD-TYPE" "GNG2 WILD-TYPE" 
    TCGA-50-6593     TCGA-50-6594     TCGA-50-6595     TCGA-50-6597 
"GNG2 WILD-TYPE" "GNG2 WILD-TYPE" "GNG2 WILD-TYPE" "GNG2 WILD-TYPE" 
    TCGA-55-1592     TCGA-55-1594     TCGA-55-1595     TCGA-55-1596 
  "GNG2 MUTATED" "GNG2 WILD-TYPE" "GNG2 WILD-TYPE" "GNG2 WILD-TYPE" 
    TCGA-55-5899     TCGA-55-6543     TCGA-55-6642     TCGA-55-6712 
"GNG2 WILD-TYPE" "GNG2 WILD-TYPE" "GNG2 WILD-TYPE" "GNG2 WILD-TYPE" 
    TCGA-64-1676     TCGA-64-1677     TCGA-64-1678     TCGA-64-1680 
"GNG2 WILD-TYPE" "GNG2 WILD-TYPE" "GNG2 WILD-TYPE" "GNG2 WILD-TYPE" 
    TCGA-64-5774     TCGA-64-5775     TCGA-64-5778     TCGA-64-5779 
"GNG2 WILD-TYPE" "GNG2 WILD-TYPE" "GNG2 WILD-TYPE" "GNG2 WILD-TYPE" 
    TCGA-64-5781     TCGA-64-5815     TCGA-67-3770     TCGA-67-3771 
"GNG2 WILD-TYPE" "GNG2 WILD-TYPE" "GNG2 WILD-TYPE" "GNG2 WILD-TYPE" 
    TCGA-67-3772     TCGA-67-3773     TCGA-67-3774     TCGA-67-6215 
"GNG2 WILD-TYPE" "GNG2 WILD-TYPE" "GNG2 WILD-TYPE" "GNG2 WILD-TYPE" 
    TCGA-67-6216     TCGA-67-6217     TCGA-71-6725     TCGA-73-4658 
"GNG2 WILD-TYPE" "GNG2 WILD-TYPE" "GNG2 WILD-TYPE" "GNG2 WILD-TYPE" 
    TCGA-73-4659     TCGA-73-4662     TCGA-73-4666     TCGA-73-4668 
"GNG2 WILD-TYPE" "GNG2 WILD-TYPE" "GNG2 WILD-TYPE" "GNG2 WILD-TYPE" 
    TCGA-73-4670     TCGA-73-4675     TCGA-73-4676     TCGA-73-4677 
"GNG2 WILD-TYPE" "GNG2 WILD-TYPE" "GNG2 WILD-TYPE" "GNG2 WILD-TYPE" 
    TCGA-91-6828     TCGA-91-6829     TCGA-91-6831     TCGA-91-6835 
"GNG2 WILD-TYPE" "GNG2 WILD-TYPE" "GNG2 WILD-TYPE" "GNG2 WILD-TYPE" 
    TCGA-91-6836 
"GNG2 WILD-TYPE" 
    TCGA-05-4249     TCGA-05-4250     TCGA-05-4382     TCGA-05-4384 
"GNG2 WILD-TYPE" "GNG2 WILD-TYPE" "GNG2 WILD-TYPE" "GNG2 WILD-TYPE" 
    TCGA-05-4390     TCGA-05-4396     TCGA-05-4397     TCGA-05-4398 
"GNG2 WILD-TYPE" "GNG2 WILD-TYPE" "GNG2 WILD-TYPE" "GNG2 WILD-TYPE" 
    TCGA-05-4402     TCGA-05-4405     TCGA-05-4415     TCGA-05-4417 
"GNG2 WILD-TYPE" "GNG2 WILD-TYPE" "GNG2 WILD-TYPE" "GNG2 WILD-TYPE" 
    TCGA-05-4418     TCGA-05-4420     TCGA-05-4424     TCGA-05-4426 
"GNG2 WILD-TYPE" "GNG2 WILD-TYPE" "GNG2 WILD-TYPE" "GNG2 WILD-TYPE" 
    TCGA-05-4427     TCGA-05-4430     TCGA-05-4432     TCGA-05-4433 
"GNG2 WILD-TYPE" "GNG2 WILD-TYPE" "GNG2 WILD-TYPE" "GNG2 WILD-TYPE" 
    TCGA-05-4434     TCGA-05-5420     TCGA-05-5423     TCGA-05-5425 
"GNG2 WILD-TYPE" "GNG2 WILD-TYPE" "GNG2 WILD-TYPE"   "GNG2 MUTATED" 
    TCGA-05-5429     TCGA-05-5715     TCGA-35-3615     TCGA-35-4122 
"GNG2 WILD-TYPE" "GNG2 WILD-TYPE" "GNG2 WILD-TYPE" "GNG2 WILD-TYPE" 
    TCGA-35-4123     TCGA-35-5375     TCGA-38-4625     TCGA-38-4626 
"GNG2 WILD-TYPE" "GNG2 WILD-TYPE" "GNG2 WILD-TYPE" "GNG2 WILD-TYPE" 
    TCGA-38-4627     TCGA-38-4628     TCGA-38-4629     TCGA-38-4630 
"GNG2 WILD-TYPE" "GNG2 WILD-TYPE" "GNG2 WILD-TYPE" "GNG2 WILD-TYPE" 
    TCGA-38-4631     TCGA-38-4632     TCGA-38-6178     TCGA-44-2655 
  "GNG2 MUTATED" "GNG2 WILD-TYPE" "GNG2 WILD-TYPE" "GNG2 WILD-TYPE" 
    TCGA-44-2656     TCGA-44-2657     TCGA-44-2659     TCGA-44-2661 
"GNG2 WILD-TYPE" "GNG2 WILD-TYPE" "GNG2 WILD-TYPE" "GNG2 WILD-TYPE" 
    TCGA-44-2662     TCGA-44-2665     TCGA-44-2666     TCGA-44-2668 
"GNG2 WILD-TYPE" "GNG2 WILD-TYPE" "GNG2 WILD-TYPE" "GNG2 WILD-TYPE" 
    TCGA-44-3396     TCGA-44-3398     TCGA-44-3918     TCGA-44-3919 
"GNG2 WILD-TYPE" "GNG2 WILD-TYPE" "GNG2 WILD-TYPE" "GNG2 WILD-TYPE" 
    TCGA-44-4112     TCGA-44-5643     TCGA-44-5645     TCGA-44-6144 
"GNG2 WILD-TYPE" "GNG2 WILD-TYPE" "GNG2 WILD-TYPE" "GNG2 WILD-TYPE" 
    TCGA-44-6145     TCGA-44-6146     TCGA-44-6147     TCGA-44-6148 
"GNG2 WILD-TYPE" "GNG2 WILD-TYPE" "GNG2 WILD-TYPE" "GNG2 WILD-TYPE" 
    TCGA-44-6774     TCGA-44-6775     TCGA-44-6776     TCGA-44-6777 
"GNG2 WILD-TYPE" "GNG2 WILD-TYPE" "GNG2 WILD-TYPE" "GNG2 WILD-TYPE" 
    TCGA-44-6778     TCGA-44-6779     TCGA-49-4486     TCGA-49-4487 
"GNG2 WILD-TYPE" "GNG2 WILD-TYPE" "GNG2 WILD-TYPE" "GNG2 WILD-TYPE" 
    TCGA-49-4488     TCGA-49-4490     TCGA-49-4494     TCGA-49-4501 
"GNG2 WILD-TYPE" "GNG2 WILD-TYPE" "GNG2 WILD-TYPE" "GNG2 WILD-TYPE" 
    TCGA-49-4505     TCGA-49-4506     TCGA-49-4507     TCGA-49-4510 
"GNG2 WILD-TYPE" "GNG2 WILD-TYPE" "GNG2 WILD-TYPE" "GNG2 WILD-TYPE" 
    TCGA-49-4512     TCGA-49-4514     TCGA-49-6742     TCGA-49-6743 
"GNG2 WILD-TYPE"   "GNG2 MUTATED" "GNG2 WILD-TYPE" "GNG2 WILD-TYPE" 
    TCGA-49-6744     TCGA-49-6745     TCGA-50-5044     TCGA-50-5045 
"GNG2 WILD-TYPE" "GNG2 WILD-TYPE" "GNG2 WILD-TYPE" "GNG2 WILD-TYPE" 
    TCGA-50-5049     TCGA-50-5051     TCGA-50-5055     TCGA-50-5066 
"GNG2 WILD-TYPE" "GNG2 WILD-TYPE" "GNG2 WILD-TYPE" "GNG2 WILD-TYPE" 
    TCGA-50-5068     TCGA-50-5072     TCGA-50-5930     TCGA-50-5931 
"GNG2 WILD-TYPE" "GNG2 WILD-TYPE" "GNG2 WILD-TYPE" "GNG2 WILD-TYPE" 
    TCGA-50-5932     TCGA-50-5933     TCGA-50-5935     TCGA-50-5936 
"GNG2 WILD-TYPE" "GNG2 WILD-TYPE" "GNG2 WILD-TYPE" "GNG2 WILD-TYPE" 
    TCGA-50-5939     TCGA-50-5941     TCGA-50-5942     TCGA-50-5944 
"GNG2 WILD-TYPE" "GNG2 WILD-TYPE" "GNG2 WILD-TYPE" "GNG2 WILD-TYPE" 
    TCGA-50-5946     TCGA-50-6590     TCGA-50-6591     TCGA-50-6592 
"GNG2 WILD-TYPE" "GNG2 WILD-TYPE" "GNG2 WILD-TYPE" "GNG2 WILD-TYPE" 
    TCGA-50-6593     TCGA-50-6594     TCGA-50-6595     TCGA-50-6597 
"GNG2 WILD-TYPE" "GNG2 WILD-TYPE" "GNG2 WILD-TYPE" "GNG2 WILD-TYPE" 
    TCGA-55-1592     TCGA-55-1594     TCGA-55-1595     TCGA-55-1596 
  "GNG2 MUTATED" "GNG2 WILD-TYPE" "GNG2 WILD-TYPE" "GNG2 WILD-TYPE" 
    TCGA-55-5899     TCGA-55-6543     TCGA-55-6642     TCGA-55-6712 
"GNG2 WILD-TYPE" "GNG2 WILD-TYPE" "GNG2 WILD-TYPE" "GNG2 WILD-TYPE" 
    TCGA-64-1676     TCGA-64-1677     TCGA-64-1678     TCGA-64-1680 
"GNG2 WILD-TYPE" "GNG2 WILD-TYPE" "GNG2 WILD-TYPE" "GNG2 WILD-TYPE" 
    TCGA-64-5774     TCGA-64-5775     TCGA-64-5778     TCGA-64-5779 
"GNG2 WILD-TYPE" "GNG2 WILD-TYPE" "GNG2 WILD-TYPE" "GNG2 WILD-TYPE" 
    TCGA-64-5781     TCGA-64-5815     TCGA-67-3770     TCGA-67-3771 
"GNG2 WILD-TYPE" "GNG2 WILD-TYPE" "GNG2 WILD-TYPE" "GNG2 WILD-TYPE" 
    TCGA-67-3772     TCGA-67-3773     TCGA-67-3774     TCGA-67-6215 
"GNG2 WILD-TYPE" "GNG2 WILD-TYPE" "GNG2 WILD-TYPE" "GNG2 WILD-TYPE" 
    TCGA-67-6216     TCGA-67-6217     TCGA-71-6725     TCGA-73-4658 
"GNG2 WILD-TYPE" "GNG2 WILD-TYPE" "GNG2 WILD-TYPE" "GNG2 WILD-TYPE" 
    TCGA-73-4659     TCGA-73-4662     TCGA-73-4666     TCGA-73-4668 
"GNG2 WILD-TYPE" "GNG2 WILD-TYPE" "GNG2 WILD-TYPE" "GNG2 WILD-TYPE" 
    TCGA-73-4670     TCGA-73-4675     TCGA-73-4676     TCGA-73-4677 
"GNG2 WILD-TYPE" "GNG2 WILD-TYPE" "GNG2 WILD-TYPE" "GNG2 WILD-TYPE" 
    TCGA-91-6828     TCGA-91-6829     TCGA-91-6831     TCGA-91-6835 
"GNG2 WILD-TYPE" "GNG2 WILD-TYPE" "GNG2 WILD-TYPE" "GNG2 WILD-TYPE" 
    TCGA-91-6836 
"GNG2 WILD-TYPE" 
    TCGA-05-4249     TCGA-05-4250     TCGA-05-4382     TCGA-05-4384 
"GNG2 WILD-TYPE" "GNG2 WILD-TYPE" "GNG2 WILD-TYPE" "GNG2 WILD-TYPE" 
    TCGA-05-4390     TCGA-05-4396     TCGA-05-4397     TCGA-05-4398 
"GNG2 WILD-TYPE" "GNG2 WILD-TYPE" "GNG2 WILD-TYPE" "GNG2 WILD-TYPE" 
    TCGA-05-4402     TCGA-05-4405     TCGA-05-4415     TCGA-05-4417 
"GNG2 WILD-TYPE" "GNG2 WILD-TYPE" "GNG2 WILD-TYPE" "GNG2 WILD-TYPE" 
    TCGA-05-4418     TCGA-05-4420     TCGA-05-4424     TCGA-05-4426 
"GNG2 WILD-TYPE" "GNG2 WILD-TYPE" "GNG2 WILD-TYPE" "GNG2 WILD-TYPE" 
    TCGA-05-4427     TCGA-05-4430     TCGA-05-4432     TCGA-05-4433 
"GNG2 WILD-TYPE" "GNG2 WILD-TYPE" "GNG2 WILD-TYPE" "GNG2 WILD-TYPE" 
    TCGA-05-4434     TCGA-05-5420     TCGA-05-5423     TCGA-05-5425 
"GNG2 WILD-TYPE" "GNG2 WILD-TYPE" "GNG2 WILD-TYPE"   "GNG2 MUTATED" 
    TCGA-05-5429     TCGA-05-5715     TCGA-35-3615     TCGA-35-4122 
"GNG2 WILD-TYPE" "GNG2 WILD-TYPE" "GNG2 WILD-TYPE" "GNG2 WILD-TYPE" 
    TCGA-35-4123     TCGA-35-5375     TCGA-38-4625     TCGA-38-4626 
"GNG2 WILD-TYPE" "GNG2 WILD-TYPE" "GNG2 WILD-TYPE" "GNG2 WILD-TYPE" 
    TCGA-38-4627     TCGA-38-4628     TCGA-38-4629     TCGA-38-4630 
"GNG2 WILD-TYPE" "GNG2 WILD-TYPE" "GNG2 WILD-TYPE" "GNG2 WILD-TYPE" 
    TCGA-38-4631     TCGA-38-4632     TCGA-38-6178     TCGA-44-2655 
  "GNG2 MUTATED" "GNG2 WILD-TYPE" "GNG2 WILD-TYPE" "GNG2 WILD-TYPE" 
    TCGA-44-2656     TCGA-44-2657     TCGA-44-2659     TCGA-44-2661 
"GNG2 WILD-TYPE" "GNG2 WILD-TYPE" "GNG2 WILD-TYPE" "GNG2 WILD-TYPE" 
    TCGA-44-2662     TCGA-44-2665     TCGA-44-2666     TCGA-44-2668 
"GNG2 WILD-TYPE" "GNG2 WILD-TYPE" "GNG2 WILD-TYPE" "GNG2 WILD-TYPE" 
    TCGA-44-3396     TCGA-44-3398     TCGA-44-3918     TCGA-44-3919 
"GNG2 WILD-TYPE" "GNG2 WILD-TYPE" "GNG2 WILD-TYPE" "GNG2 WILD-TYPE" 
    TCGA-44-4112     TCGA-44-5643     TCGA-44-5645     TCGA-44-6144 
"GNG2 WILD-TYPE" "GNG2 WILD-TYPE" "GNG2 WILD-TYPE" "GNG2 WILD-TYPE" 
    TCGA-44-6145     TCGA-44-6146     TCGA-44-6147     TCGA-44-6148 
"GNG2 WILD-TYPE" "GNG2 WILD-TYPE" "GNG2 WILD-TYPE" "GNG2 WILD-TYPE" 
    TCGA-44-6774     TCGA-44-6775     TCGA-44-6776     TCGA-44-6777 
"GNG2 WILD-TYPE" "GNG2 WILD-TYPE" "GNG2 WILD-TYPE" "GNG2 WILD-TYPE" 
    TCGA-44-6778     TCGA-44-6779     TCGA-49-4486     TCGA-49-4487 
"GNG2 WILD-TYPE" "GNG2 WILD-TYPE" "GNG2 WILD-TYPE" "GNG2 WILD-TYPE" 
    TCGA-49-4488     TCGA-49-4490     TCGA-49-4494     TCGA-49-4501 
"GNG2 WILD-TYPE" "GNG2 WILD-TYPE" "GNG2 WILD-TYPE" "GNG2 WILD-TYPE" 
    TCGA-49-4505     TCGA-49-4506     TCGA-49-4507     TCGA-49-4510 
"GNG2 WILD-TYPE" "GNG2 WILD-TYPE" "GNG2 WILD-TYPE" "GNG2 WILD-TYPE" 
    TCGA-49-4512     TCGA-49-4514     TCGA-49-6742     TCGA-49-6743 
"GNG2 WILD-TYPE"   "GNG2 MUTATED" "GNG2 WILD-TYPE" "GNG2 WILD-TYPE" 
    TCGA-49-6744     TCGA-49-6745     TCGA-50-5044     TCGA-50-5045 
"GNG2 WILD-TYPE" "GNG2 WILD-TYPE" "GNG2 WILD-TYPE" "GNG2 WILD-TYPE" 
    TCGA-50-5049     TCGA-50-5051     TCGA-50-5055     TCGA-50-5066 
"GNG2 WILD-TYPE" "GNG2 WILD-TYPE" "GNG2 WILD-TYPE" "GNG2 WILD-TYPE" 
    TCGA-50-5068     TCGA-50-5072     TCGA-50-5930     TCGA-50-5931 
"GNG2 WILD-TYPE" "GNG2 WILD-TYPE" "GNG2 WILD-TYPE" "GNG2 WILD-TYPE" 
    TCGA-50-5932     TCGA-50-5933     TCGA-50-5935     TCGA-50-5936 
"GNG2 WILD-TYPE" "GNG2 WILD-TYPE" "GNG2 WILD-TYPE" "GNG2 WILD-TYPE" 
    TCGA-50-5939     TCGA-50-5941     TCGA-50-5942     TCGA-50-5944 
"GNG2 WILD-TYPE" "GNG2 WILD-TYPE" "GNG2 WILD-TYPE" "GNG2 WILD-TYPE" 
    TCGA-50-5946     TCGA-50-6590     TCGA-50-6591     TCGA-50-6592 
"GNG2 WILD-TYPE" "GNG2 WILD-TYPE" "GNG2 WILD-TYPE" "GNG2 WILD-TYPE" 
    TCGA-50-6593     TCGA-50-6594     TCGA-50-6595     TCGA-50-6597 
"GNG2 WILD-TYPE" "GNG2 WILD-TYPE" "GNG2 WILD-TYPE" "GNG2 WILD-TYPE" 
    TCGA-55-1592     TCGA-55-1594     TCGA-55-1595     TCGA-55-1596 
  "GNG2 MUTATED" "GNG2 WILD-TYPE" "GNG2 WILD-TYPE" "GNG2 WILD-TYPE" 
    TCGA-55-5899     TCGA-55-6543     TCGA-55-6642     TCGA-55-6712 
"GNG2 WILD-TYPE" "GNG2 WILD-TYPE" "GNG2 WILD-TYPE" "GNG2 WILD-TYPE" 
    TCGA-64-1676     TCGA-64-1677     TCGA-64-1678     TCGA-64-1680 
"GNG2 WILD-TYPE" "GNG2 WILD-TYPE" "GNG2 WILD-TYPE" "GNG2 WILD-TYPE" 
    TCGA-64-5774     TCGA-64-5775     TCGA-64-5778     TCGA-64-5779 
"GNG2 WILD-TYPE" "GNG2 WILD-TYPE" "GNG2 WILD-TYPE" "GNG2 WILD-TYPE" 
    TCGA-64-5781     TCGA-64-5815     TCGA-67-3770     TCGA-67-3771 
"GNG2 WILD-TYPE" "GNG2 WILD-TYPE" "GNG2 WILD-TYPE" "GNG2 WILD-TYPE" 
    TCGA-67-3772     TCGA-67-3773     TCGA-67-3774     TCGA-67-6215 
"GNG2 WILD-TYPE" "GNG2 WILD-TYPE" "GNG2 WILD-TYPE" "GNG2 WILD-TYPE" 
    TCGA-67-6216     TCGA-67-6217     TCGA-71-6725     TCGA-73-4658 
"GNG2 WILD-TYPE" "GNG2 WILD-TYPE" "GNG2 WILD-TYPE" "GNG2 WILD-TYPE" 
    TCGA-73-4659     TCGA-73-4662     TCGA-73-4666     TCGA-73-4668 
"GNG2 WILD-TYPE" "GNG2 WILD-TYPE" "GNG2 WILD-TYPE" "GNG2 WILD-TYPE" 
    TCGA-73-4670     TCGA-73-4675     TCGA-73-4676     TCGA-73-4677 
"GNG2 WILD-TYPE" "GNG2 WILD-TYPE" "GNG2 WILD-TYPE" "GNG2 WILD-TYPE" 
    TCGA-91-6828     TCGA-91-6829     TCGA-91-6831     TCGA-91-6835 
"GNG2 WILD-TYPE" "GNG2 WILD-TYPE" "GNG2 WILD-TYPE" "GNG2 WILD-TYPE" 
    TCGA-91-6836 
"GNG2 WILD-TYPE" 
[1] "hr=" "1.6"
D140V2, continuous
D140V3, binary
[1] "tbl2"
                cls
clus             [,1] [,2]
  GNG2 MUTATED      2    2
  GNG2 WILD-TYPE   91   77
        clus
vv       GNG2 MUTATED GNG2 WILD-TYPE
  FEMALE            2             91
  MALE              2             77
D140V4, continuous
D140V5, multiclass
D140V6, multiclass
    clus
vv   GNG2 MUTATED GNG2 WILD-TYPE
  T1            1             40
  T2            3            105
  T3            0             14
  T4            0              8
D140V7, multiclass
       clus
vv      GNG2 MUTATED GNG2 WILD-TYPE
  N0               3             92
  N1               1             36
  N2+N3            0             35
D140V8, multiclass
    clus
vv   GNG2 MUTATED GNG2 WILD-TYPE
  M0            4            133
  M1            0              9
  MX            0             22
D140V9, multiclass
     clus
vv    GNG2 MUTATED GNG2 WILD-TYPE
  I              3             85
  II             1             32
  III            0             39
  IV             0              9
D140V10, binary
[1] "tbl2"
                cls
clus             [,1] [,2]
  GNG2 MUTATED      0    4
  GNG2 WILD-TYPE   16  152
     clus
vv    GNG2 MUTATED GNG2 WILD-TYPE
  NO             0             16
  YES            4            152
D140V11, continuous
D140V12, continuous
[1] "Remove cluster labels:" "GNG2 MUTATED"          
clus
  GNG2 MUTATED GNG2 WILD-TYPE 
             2             80 
    TCGA-05-4384     TCGA-05-4390     TCGA-05-4396     TCGA-05-4403 
"GNG2 WILD-TYPE" "GNG2 WILD-TYPE" "GNG2 WILD-TYPE" "GNG2 WILD-TYPE" 
    TCGA-05-4405     TCGA-05-4410     TCGA-05-4415     TCGA-05-4417 
"GNG2 WILD-TYPE" "GNG2 WILD-TYPE" "GNG2 WILD-TYPE" "GNG2 WILD-TYPE" 
    TCGA-05-4424     TCGA-05-4427     TCGA-05-4433     TCGA-05-5420 
"GNG2 WILD-TYPE" "GNG2 WILD-TYPE" "GNG2 WILD-TYPE" "GNG2 WILD-TYPE" 
    TCGA-05-5423     TCGA-05-5428     TCGA-35-4122     TCGA-35-4123 
"GNG2 WILD-TYPE" "GNG2 WILD-TYPE" "GNG2 WILD-TYPE" "GNG2 WILD-TYPE" 
    TCGA-35-5375     TCGA-38-4629     TCGA-38-4632     TCGA-44-2655 
"GNG2 WILD-TYPE" "GNG2 WILD-TYPE" "GNG2 WILD-TYPE" "GNG2 WILD-TYPE" 
    TCGA-44-2656     TCGA-44-2657     TCGA-44-2659     TCGA-44-2662 
"GNG2 WILD-TYPE" "GNG2 WILD-TYPE" "GNG2 WILD-TYPE" "GNG2 WILD-TYPE" 
    TCGA-44-2668     TCGA-44-3398     TCGA-44-3918     TCGA-44-4112 
"GNG2 WILD-TYPE" "GNG2 WILD-TYPE" "GNG2 WILD-TYPE" "GNG2 WILD-TYPE" 
    TCGA-44-5645     TCGA-44-6145     TCGA-44-6146     TCGA-44-6147 
"GNG2 WILD-TYPE" "GNG2 WILD-TYPE" "GNG2 WILD-TYPE" "GNG2 WILD-TYPE" 
    TCGA-44-6148     TCGA-44-6775     TCGA-44-6776     TCGA-44-6777 
"GNG2 WILD-TYPE" "GNG2 WILD-TYPE" "GNG2 WILD-TYPE" "GNG2 WILD-TYPE" 
    TCGA-44-6778     TCGA-44-6779     TCGA-49-4486     TCGA-49-4488 
"GNG2 WILD-TYPE" "GNG2 WILD-TYPE" "GNG2 WILD-TYPE" "GNG2 WILD-TYPE" 
    TCGA-49-4494     TCGA-49-4505     TCGA-49-4507     TCGA-50-5051 
"GNG2 WILD-TYPE" "GNG2 WILD-TYPE" "GNG2 WILD-TYPE" "GNG2 WILD-TYPE" 
    TCGA-50-5072     TCGA-50-5939     TCGA-50-5942     TCGA-50-5946 
"GNG2 WILD-TYPE" "GNG2 WILD-TYPE" "GNG2 WILD-TYPE" "GNG2 WILD-TYPE" 
    TCGA-50-6590     TCGA-50-6594     TCGA-50-6595     TCGA-55-1595 
"GNG2 WILD-TYPE" "GNG2 WILD-TYPE" "GNG2 WILD-TYPE" "GNG2 WILD-TYPE" 
    TCGA-55-6543     TCGA-55-6712     TCGA-64-1678     TCGA-64-1680 
"GNG2 WILD-TYPE" "GNG2 WILD-TYPE" "GNG2 WILD-TYPE" "GNG2 WILD-TYPE" 
    TCGA-64-5774     TCGA-64-5778     TCGA-64-5779     TCGA-64-5781 
"GNG2 WILD-TYPE" "GNG2 WILD-TYPE" "GNG2 WILD-TYPE" "GNG2 WILD-TYPE" 
    TCGA-64-5815     TCGA-67-6217     TCGA-73-4659     TCGA-73-4662 
"GNG2 WILD-TYPE" "GNG2 WILD-TYPE" "GNG2 WILD-TYPE" "GNG2 WILD-TYPE" 
    TCGA-73-4666     TCGA-73-4668     TCGA-73-4670     TCGA-73-4675 
"GNG2 WILD-TYPE" "GNG2 WILD-TYPE" "GNG2 WILD-TYPE" "GNG2 WILD-TYPE" 
    TCGA-73-4676     TCGA-73-4677     TCGA-75-5122     TCGA-75-5125 
"GNG2 WILD-TYPE" "GNG2 WILD-TYPE" "GNG2 WILD-TYPE" "GNG2 WILD-TYPE" 
    TCGA-75-5126     TCGA-75-5146     TCGA-75-6206     TCGA-75-6207 
"GNG2 WILD-TYPE" "GNG2 WILD-TYPE" "GNG2 WILD-TYPE" "GNG2 WILD-TYPE" 
    TCGA-80-5611     TCGA-91-6828     TCGA-91-6829     TCGA-91-6835 
"GNG2 WILD-TYPE" "GNG2 WILD-TYPE" "GNG2 WILD-TYPE" "GNG2 WILD-TYPE" 
D140V13, multiclass
                                             clus
vv                                            GNG2 MUTATED GNG2 WILD-TYPE
  CURRENT REFORMED SMOKER FOR < OR = 15 YEARS            2             60
  CURRENT REFORMED SMOKER FOR > 15 YEARS                 2             44
  CURRENT SMOKER                                         0             28
  LIFELONG NON-SMOKER                                    0             24
D140V14, continuous
[1] "Remove cluster labels:" "GNG2 MUTATED"          
clus
  GNG2 MUTATED GNG2 WILD-TYPE 
             2             66 
    TCGA-05-4384     TCGA-05-4390     TCGA-05-4396     TCGA-05-4405 
"GNG2 WILD-TYPE" "GNG2 WILD-TYPE" "GNG2 WILD-TYPE" "GNG2 WILD-TYPE" 
    TCGA-05-4410     TCGA-05-4415     TCGA-05-4417     TCGA-05-4424 
"GNG2 WILD-TYPE" "GNG2 WILD-TYPE" "GNG2 WILD-TYPE" "GNG2 WILD-TYPE" 
    TCGA-05-4427     TCGA-05-4433     TCGA-05-5420     TCGA-05-5423 
"GNG2 WILD-TYPE" "GNG2 WILD-TYPE" "GNG2 WILD-TYPE" "GNG2 WILD-TYPE" 
    TCGA-05-5428     TCGA-35-4122     TCGA-35-4123     TCGA-35-5375 
"GNG2 WILD-TYPE" "GNG2 WILD-TYPE" "GNG2 WILD-TYPE" "GNG2 WILD-TYPE" 
    TCGA-38-4625     TCGA-38-4626     TCGA-44-2655     TCGA-44-2656 
"GNG2 WILD-TYPE" "GNG2 WILD-TYPE" "GNG2 WILD-TYPE" "GNG2 WILD-TYPE" 
    TCGA-44-2657     TCGA-44-2659     TCGA-44-2662     TCGA-44-2666 
"GNG2 WILD-TYPE" "GNG2 WILD-TYPE" "GNG2 WILD-TYPE" "GNG2 WILD-TYPE" 
    TCGA-44-2668     TCGA-44-3396     TCGA-44-3398     TCGA-44-3918 
"GNG2 WILD-TYPE" "GNG2 WILD-TYPE" "GNG2 WILD-TYPE" "GNG2 WILD-TYPE" 
    TCGA-44-4112     TCGA-44-5645     TCGA-44-6144     TCGA-44-6145 
"GNG2 WILD-TYPE" "GNG2 WILD-TYPE" "GNG2 WILD-TYPE" "GNG2 WILD-TYPE" 
    TCGA-44-6147     TCGA-44-6148     TCGA-44-6774     TCGA-44-6775 
"GNG2 WILD-TYPE" "GNG2 WILD-TYPE" "GNG2 WILD-TYPE" "GNG2 WILD-TYPE" 
    TCGA-44-6776     TCGA-44-6777     TCGA-44-6778     TCGA-44-6779 
"GNG2 WILD-TYPE" "GNG2 WILD-TYPE" "GNG2 WILD-TYPE" "GNG2 WILD-TYPE" 
    TCGA-49-4486     TCGA-49-4494     TCGA-49-4505     TCGA-55-1594 
"GNG2 WILD-TYPE" "GNG2 WILD-TYPE" "GNG2 WILD-TYPE" "GNG2 WILD-TYPE" 
    TCGA-55-1595     TCGA-55-1596     TCGA-55-5899     TCGA-55-6642 
"GNG2 WILD-TYPE" "GNG2 WILD-TYPE" "GNG2 WILD-TYPE" "GNG2 WILD-TYPE" 
    TCGA-55-6712     TCGA-64-1677     TCGA-64-1678     TCGA-64-1680 
"GNG2 WILD-TYPE" "GNG2 WILD-TYPE" "GNG2 WILD-TYPE" "GNG2 WILD-TYPE" 
    TCGA-64-5774     TCGA-64-5775     TCGA-64-5778     TCGA-64-5779 
"GNG2 WILD-TYPE" "GNG2 WILD-TYPE" "GNG2 WILD-TYPE" "GNG2 WILD-TYPE" 
    TCGA-64-5781     TCGA-73-4659     TCGA-73-4662     TCGA-73-4666 
"GNG2 WILD-TYPE" "GNG2 WILD-TYPE" "GNG2 WILD-TYPE" "GNG2 WILD-TYPE" 
    TCGA-73-4668     TCGA-73-4670     TCGA-73-4675     TCGA-73-4676 
"GNG2 WILD-TYPE" "GNG2 WILD-TYPE" "GNG2 WILD-TYPE" "GNG2 WILD-TYPE" 
    TCGA-91-6829     TCGA-91-6836 
"GNG2 WILD-TYPE" "GNG2 WILD-TYPE" 

Clustering(141) Variable = ARPP21 MUTATION ANALYSIS
D141V1, survival
                  sevent
clus2               0  1
  ARPP21 MUTATED    8  4
  ARPP21 WILD-TYPE 91 46
  ARPP21 MUTATED ARPP21 WILD-TYPE 
              12              137 
  ARPP21 MUTATED ARPP21 WILD-TYPE 
               4               46 
$`ARPP21 MUTATED`
TCGA-05-4382 TCGA-05-4396 TCGA-05-4398 TCGA-05-4427 TCGA-38-4632 TCGA-44-2655 
       19.92         9.96        47.05        26.01        44.61        18.87 
TCGA-49-4488 TCGA-49-6744 TCGA-50-5066 TCGA-55-1596 TCGA-64-5775 TCGA-64-5778 
       28.57        12.99         9.76        45.17         0.10        30.44 

$`ARPP21 WILD-TYPE`
TCGA-05-4249 TCGA-05-4250 TCGA-05-4384 TCGA-05-4390 TCGA-05-4397 TCGA-05-4402 
       38.07         3.98        14.01        37.02        24.03         8.02 
TCGA-05-4405 TCGA-05-4415 TCGA-05-4417 TCGA-05-4418 TCGA-05-4420 TCGA-05-4424 
       20.05         2.96        14.93         8.98        29.95        30.02 
TCGA-05-4426 TCGA-05-4430 TCGA-05-4432 TCGA-05-4433 TCGA-05-4434 TCGA-05-5420 
       26.01        25.02        25.02        24.00        15.02         1.02 
TCGA-05-5423 TCGA-05-5425 TCGA-05-5429 TCGA-05-5715 TCGA-35-3615 TCGA-35-4122 
        4.96         2.96         0.99         2.04         0.46         7.36 
TCGA-35-4123 TCGA-35-5375 TCGA-38-4625 TCGA-38-4626 TCGA-38-4627 TCGA-38-4628 
        5.95         8.68        47.61        85.32        37.71        49.02 
TCGA-38-4629 TCGA-38-4630 TCGA-38-4631 TCGA-38-6178 TCGA-44-2656 TCGA-44-2657 
       28.37        35.28        11.64         5.19        19.10        13.15 
TCGA-44-2659 TCGA-44-2661 TCGA-44-2662 TCGA-44-2665 TCGA-44-2666 TCGA-44-2668 
       17.39         3.39        15.78        13.15         3.19         8.09 
TCGA-44-3396 TCGA-44-3398 TCGA-44-3918 TCGA-44-3919 TCGA-44-4112 TCGA-44-5643 
       10.22         8.32         6.44         6.21         4.60         3.48 
TCGA-44-5645 TCGA-44-6144 TCGA-44-6145 TCGA-44-6146 TCGA-44-6147 TCGA-44-6148 
        6.84         0.30         3.35         9.93         7.76         3.12 
TCGA-44-6774 TCGA-44-6775 TCGA-44-6776 TCGA-44-6777 TCGA-44-6778 TCGA-44-6779 
        5.42         2.70        63.72        32.45        36.49        16.41 
TCGA-49-4486 TCGA-49-4487 TCGA-49-4490 TCGA-49-4494 TCGA-49-4501 TCGA-49-4505 
       76.21        28.11        12.66        35.54        46.72        14.07 
TCGA-49-4506 TCGA-49-4507 TCGA-49-4510 TCGA-49-4512 TCGA-49-4514 TCGA-49-6742 
       32.84         8.81        29.46        29.75        43.20        15.02 
TCGA-49-6743 TCGA-49-6745 TCGA-50-5044 TCGA-50-5045 TCGA-50-5049 TCGA-50-5051 
       12.13         4.93        20.48        71.47        48.82        14.96 
TCGA-50-5055 TCGA-50-5068 TCGA-50-5072 TCGA-50-5930 TCGA-50-5931 TCGA-50-5932 
       25.81        49.28         8.05         9.27         8.78        35.87 
TCGA-50-5933 TCGA-50-5935 TCGA-50-5936 TCGA-50-5939 TCGA-50-5941 TCGA-50-5942 
       77.88        21.47         8.45        15.12         9.37         4.44 
TCGA-50-5944 TCGA-50-5946 TCGA-50-6590 TCGA-50-6591 TCGA-50-6592 TCGA-50-6593 
       12.26        11.47        42.31         3.88        25.51        11.05 
TCGA-50-6594 TCGA-50-6595 TCGA-50-6597 TCGA-55-1592 TCGA-55-1594 TCGA-55-1595 
       12.16         6.21        33.37        23.05        38.73        48.62 
TCGA-55-5899 TCGA-55-6543 TCGA-55-6642 TCGA-55-6712 TCGA-64-1676 TCGA-64-1677 
        2.86         0.07        32.61         0.79        56.81        20.65 
TCGA-64-1678 TCGA-64-1680 TCGA-64-5774 TCGA-64-5779 TCGA-64-5781 TCGA-64-5815 
       39.09        37.02        83.84        16.67        39.52         7.33 
TCGA-67-3770 TCGA-67-3771 TCGA-67-3772 TCGA-67-3773 TCGA-67-3774 TCGA-67-6215 
        0.99         1.97         0.59         2.04         0.59         0.89 
TCGA-67-6216 TCGA-67-6217 TCGA-71-6725 TCGA-73-4658 TCGA-73-4659 TCGA-73-4662 
        0.69        13.87         2.01        52.57        23.38        29.95 
TCGA-73-4666 TCGA-73-4668 TCGA-73-4670 TCGA-73-4675 TCGA-73-4676 TCGA-73-4677 
       20.28        15.35         0.46         1.32         4.01         1.25 
TCGA-91-6828 TCGA-91-6829 TCGA-91-6831 TCGA-91-6835 TCGA-91-6836 
        1.22        41.33         1.28         1.15         0.36 

  ARPP21 MUTATED ARPP21 WILD-TYPE 
            0.10             0.07 
  ARPP21 MUTATED ARPP21 WILD-TYPE 
           47.05            85.32 
  ARPP21 MUTATED ARPP21 WILD-TYPE 
          22.965           13.150 
[1] "0.1 - 47.0 (23.0)" "0.1 - 85.3 (13.2)"
      TCGA-05-4249       TCGA-05-4250       TCGA-05-4382       TCGA-05-4384 
"ARPP21 WILD-TYPE" "ARPP21 WILD-TYPE"   "ARPP21 MUTATED" "ARPP21 WILD-TYPE" 
      TCGA-05-4390       TCGA-05-4396       TCGA-05-4397       TCGA-05-4398 
"ARPP21 WILD-TYPE"   "ARPP21 MUTATED" "ARPP21 WILD-TYPE"   "ARPP21 MUTATED" 
      TCGA-05-4402       TCGA-05-4405       TCGA-05-4415       TCGA-05-4417 
"ARPP21 WILD-TYPE" "ARPP21 WILD-TYPE" "ARPP21 WILD-TYPE" "ARPP21 WILD-TYPE" 
      TCGA-05-4418       TCGA-05-4420       TCGA-05-4424       TCGA-05-4426 
"ARPP21 WILD-TYPE" "ARPP21 WILD-TYPE" "ARPP21 WILD-TYPE" "ARPP21 WILD-TYPE" 
      TCGA-05-4427       TCGA-05-4430       TCGA-05-4432       TCGA-05-4433 
  "ARPP21 MUTATED" "ARPP21 WILD-TYPE" "ARPP21 WILD-TYPE" "ARPP21 WILD-TYPE" 
      TCGA-05-4434       TCGA-05-5420       TCGA-05-5423       TCGA-05-5425 
"ARPP21 WILD-TYPE" "ARPP21 WILD-TYPE" "ARPP21 WILD-TYPE" "ARPP21 WILD-TYPE" 
      TCGA-05-5429       TCGA-05-5715       TCGA-35-3615       TCGA-35-4122 
"ARPP21 WILD-TYPE" "ARPP21 WILD-TYPE" "ARPP21 WILD-TYPE" "ARPP21 WILD-TYPE" 
      TCGA-35-4123       TCGA-35-5375       TCGA-38-4625       TCGA-38-4626 
"ARPP21 WILD-TYPE" "ARPP21 WILD-TYPE" "ARPP21 WILD-TYPE" "ARPP21 WILD-TYPE" 
      TCGA-38-4627       TCGA-38-4628       TCGA-38-4629       TCGA-38-4630 
"ARPP21 WILD-TYPE" "ARPP21 WILD-TYPE" "ARPP21 WILD-TYPE" "ARPP21 WILD-TYPE" 
      TCGA-38-4631       TCGA-38-4632       TCGA-38-6178       TCGA-44-2655 
"ARPP21 WILD-TYPE"   "ARPP21 MUTATED" "ARPP21 WILD-TYPE"   "ARPP21 MUTATED" 
      TCGA-44-2656       TCGA-44-2657       TCGA-44-2659       TCGA-44-2661 
"ARPP21 WILD-TYPE" "ARPP21 WILD-TYPE" "ARPP21 WILD-TYPE" "ARPP21 WILD-TYPE" 
      TCGA-44-2662       TCGA-44-2665       TCGA-44-2666       TCGA-44-2668 
"ARPP21 WILD-TYPE" "ARPP21 WILD-TYPE" "ARPP21 WILD-TYPE" "ARPP21 WILD-TYPE" 
      TCGA-44-3396       TCGA-44-3398       TCGA-44-3918       TCGA-44-3919 
"ARPP21 WILD-TYPE" "ARPP21 WILD-TYPE" "ARPP21 WILD-TYPE" "ARPP21 WILD-TYPE" 
      TCGA-44-4112       TCGA-44-5643       TCGA-44-5645       TCGA-44-6144 
"ARPP21 WILD-TYPE" "ARPP21 WILD-TYPE" "ARPP21 WILD-TYPE" "ARPP21 WILD-TYPE" 
      TCGA-44-6145       TCGA-44-6146       TCGA-44-6147       TCGA-44-6148 
"ARPP21 WILD-TYPE" "ARPP21 WILD-TYPE" "ARPP21 WILD-TYPE" "ARPP21 WILD-TYPE" 
      TCGA-44-6774       TCGA-44-6775       TCGA-44-6776       TCGA-44-6777 
"ARPP21 WILD-TYPE" "ARPP21 WILD-TYPE" "ARPP21 WILD-TYPE" "ARPP21 WILD-TYPE" 
      TCGA-44-6778       TCGA-44-6779       TCGA-49-4486       TCGA-49-4487 
"ARPP21 WILD-TYPE" "ARPP21 WILD-TYPE" "ARPP21 WILD-TYPE" "ARPP21 WILD-TYPE" 
      TCGA-49-4488       TCGA-49-4490       TCGA-49-4494       TCGA-49-4501 
  "ARPP21 MUTATED" "ARPP21 WILD-TYPE" "ARPP21 WILD-TYPE" "ARPP21 WILD-TYPE" 
      TCGA-49-4505       TCGA-49-4506       TCGA-49-4507       TCGA-49-4510 
"ARPP21 WILD-TYPE" "ARPP21 WILD-TYPE" "ARPP21 WILD-TYPE" "ARPP21 WILD-TYPE" 
      TCGA-49-4512       TCGA-49-4514       TCGA-49-6742       TCGA-49-6743 
"ARPP21 WILD-TYPE" "ARPP21 WILD-TYPE" "ARPP21 WILD-TYPE" "ARPP21 WILD-TYPE" 
      TCGA-49-6744       TCGA-49-6745       TCGA-50-5044       TCGA-50-5045 
  "ARPP21 MUTATED" "ARPP21 WILD-TYPE" "ARPP21 WILD-TYPE" "ARPP21 WILD-TYPE" 
      TCGA-50-5049       TCGA-50-5051       TCGA-50-5055       TCGA-50-5066 
"ARPP21 WILD-TYPE" "ARPP21 WILD-TYPE" "ARPP21 WILD-TYPE"   "ARPP21 MUTATED" 
      TCGA-50-5068       TCGA-50-5072       TCGA-50-5930       TCGA-50-5931 
"ARPP21 WILD-TYPE" "ARPP21 WILD-TYPE" "ARPP21 WILD-TYPE" "ARPP21 WILD-TYPE" 
      TCGA-50-5932       TCGA-50-5933       TCGA-50-5935       TCGA-50-5936 
"ARPP21 WILD-TYPE" "ARPP21 WILD-TYPE" "ARPP21 WILD-TYPE" "ARPP21 WILD-TYPE" 
      TCGA-50-5939       TCGA-50-5941       TCGA-50-5942       TCGA-50-5944 
"ARPP21 WILD-TYPE" "ARPP21 WILD-TYPE" "ARPP21 WILD-TYPE" "ARPP21 WILD-TYPE" 
      TCGA-50-5946       TCGA-50-6590       TCGA-50-6591       TCGA-50-6592 
"ARPP21 WILD-TYPE" "ARPP21 WILD-TYPE" "ARPP21 WILD-TYPE" "ARPP21 WILD-TYPE" 
      TCGA-50-6593       TCGA-50-6594       TCGA-50-6595       TCGA-50-6597 
"ARPP21 WILD-TYPE" "ARPP21 WILD-TYPE" "ARPP21 WILD-TYPE" "ARPP21 WILD-TYPE" 
      TCGA-55-1592       TCGA-55-1594       TCGA-55-1595       TCGA-55-1596 
"ARPP21 WILD-TYPE" "ARPP21 WILD-TYPE" "ARPP21 WILD-TYPE"   "ARPP21 MUTATED" 
      TCGA-55-5899       TCGA-55-6543       TCGA-55-6642       TCGA-55-6712 
"ARPP21 WILD-TYPE" "ARPP21 WILD-TYPE" "ARPP21 WILD-TYPE" "ARPP21 WILD-TYPE" 
      TCGA-64-1676       TCGA-64-1677       TCGA-64-1678       TCGA-64-1680 
"ARPP21 WILD-TYPE" "ARPP21 WILD-TYPE" "ARPP21 WILD-TYPE" "ARPP21 WILD-TYPE" 
      TCGA-64-5774       TCGA-64-5775       TCGA-64-5778       TCGA-64-5779 
"ARPP21 WILD-TYPE"   "ARPP21 MUTATED"   "ARPP21 MUTATED" "ARPP21 WILD-TYPE" 
      TCGA-64-5781       TCGA-64-5815       TCGA-67-3770       TCGA-67-3771 
"ARPP21 WILD-TYPE" "ARPP21 WILD-TYPE" "ARPP21 WILD-TYPE" "ARPP21 WILD-TYPE" 
      TCGA-67-3772       TCGA-67-3773       TCGA-67-3774       TCGA-67-6215 
"ARPP21 WILD-TYPE" "ARPP21 WILD-TYPE" "ARPP21 WILD-TYPE" "ARPP21 WILD-TYPE" 
      TCGA-67-6216       TCGA-67-6217       TCGA-71-6725       TCGA-73-4658 
"ARPP21 WILD-TYPE" "ARPP21 WILD-TYPE" "ARPP21 WILD-TYPE" "ARPP21 WILD-TYPE" 
      TCGA-73-4659       TCGA-73-4662       TCGA-73-4666       TCGA-73-4668 
"ARPP21 WILD-TYPE" "ARPP21 WILD-TYPE" "ARPP21 WILD-TYPE" "ARPP21 WILD-TYPE" 
      TCGA-73-4670       TCGA-73-4675       TCGA-73-4676       TCGA-73-4677 
"ARPP21 WILD-TYPE" "ARPP21 WILD-TYPE" "ARPP21 WILD-TYPE" "ARPP21 WILD-TYPE" 
      TCGA-91-6828       TCGA-91-6829       TCGA-91-6831       TCGA-91-6835 
"ARPP21 WILD-TYPE" "ARPP21 WILD-TYPE" "ARPP21 WILD-TYPE" "ARPP21 WILD-TYPE" 
      TCGA-91-6836 
"ARPP21 WILD-TYPE" 
      TCGA-05-4249       TCGA-05-4250       TCGA-05-4382       TCGA-05-4384 
"ARPP21 WILD-TYPE" "ARPP21 WILD-TYPE"   "ARPP21 MUTATED" "ARPP21 WILD-TYPE" 
      TCGA-05-4390       TCGA-05-4396       TCGA-05-4397       TCGA-05-4398 
"ARPP21 WILD-TYPE"   "ARPP21 MUTATED" "ARPP21 WILD-TYPE"   "ARPP21 MUTATED" 
      TCGA-05-4402       TCGA-05-4405       TCGA-05-4415       TCGA-05-4417 
"ARPP21 WILD-TYPE" "ARPP21 WILD-TYPE" "ARPP21 WILD-TYPE" "ARPP21 WILD-TYPE" 
      TCGA-05-4418       TCGA-05-4420       TCGA-05-4424       TCGA-05-4426 
"ARPP21 WILD-TYPE" "ARPP21 WILD-TYPE" "ARPP21 WILD-TYPE" "ARPP21 WILD-TYPE" 
      TCGA-05-4427       TCGA-05-4430       TCGA-05-4432       TCGA-05-4433 
  "ARPP21 MUTATED" "ARPP21 WILD-TYPE" "ARPP21 WILD-TYPE" "ARPP21 WILD-TYPE" 
      TCGA-05-4434       TCGA-05-5420       TCGA-05-5423       TCGA-05-5425 
"ARPP21 WILD-TYPE" "ARPP21 WILD-TYPE" "ARPP21 WILD-TYPE" "ARPP21 WILD-TYPE" 
      TCGA-05-5429       TCGA-05-5715       TCGA-35-3615       TCGA-35-4122 
"ARPP21 WILD-TYPE" "ARPP21 WILD-TYPE" "ARPP21 WILD-TYPE" "ARPP21 WILD-TYPE" 
      TCGA-35-4123       TCGA-35-5375       TCGA-38-4625       TCGA-38-4626 
"ARPP21 WILD-TYPE" "ARPP21 WILD-TYPE" "ARPP21 WILD-TYPE" "ARPP21 WILD-TYPE" 
      TCGA-38-4627       TCGA-38-4628       TCGA-38-4629       TCGA-38-4630 
"ARPP21 WILD-TYPE" "ARPP21 WILD-TYPE" "ARPP21 WILD-TYPE" "ARPP21 WILD-TYPE" 
      TCGA-38-4631       TCGA-38-4632       TCGA-38-6178       TCGA-44-2655 
"ARPP21 WILD-TYPE"   "ARPP21 MUTATED" "ARPP21 WILD-TYPE"   "ARPP21 MUTATED" 
      TCGA-44-2656       TCGA-44-2657       TCGA-44-2659       TCGA-44-2661 
"ARPP21 WILD-TYPE" "ARPP21 WILD-TYPE" "ARPP21 WILD-TYPE" "ARPP21 WILD-TYPE" 
      TCGA-44-2662       TCGA-44-2665       TCGA-44-2666       TCGA-44-2668 
"ARPP21 WILD-TYPE" "ARPP21 WILD-TYPE" "ARPP21 WILD-TYPE" "ARPP21 WILD-TYPE" 
      TCGA-44-3396       TCGA-44-3398       TCGA-44-3918       TCGA-44-3919 
"ARPP21 WILD-TYPE" "ARPP21 WILD-TYPE" "ARPP21 WILD-TYPE" "ARPP21 WILD-TYPE" 
      TCGA-44-4112       TCGA-44-5643       TCGA-44-5645       TCGA-44-6144 
"ARPP21 WILD-TYPE" "ARPP21 WILD-TYPE" "ARPP21 WILD-TYPE" "ARPP21 WILD-TYPE" 
      TCGA-44-6145       TCGA-44-6146       TCGA-44-6147       TCGA-44-6148 
"ARPP21 WILD-TYPE" "ARPP21 WILD-TYPE" "ARPP21 WILD-TYPE" "ARPP21 WILD-TYPE" 
      TCGA-44-6774       TCGA-44-6775       TCGA-44-6776       TCGA-44-6777 
"ARPP21 WILD-TYPE" "ARPP21 WILD-TYPE" "ARPP21 WILD-TYPE" "ARPP21 WILD-TYPE" 
      TCGA-44-6778       TCGA-44-6779       TCGA-49-4486       TCGA-49-4487 
"ARPP21 WILD-TYPE" "ARPP21 WILD-TYPE" "ARPP21 WILD-TYPE" "ARPP21 WILD-TYPE" 
      TCGA-49-4488       TCGA-49-4490       TCGA-49-4494       TCGA-49-4501 
  "ARPP21 MUTATED" "ARPP21 WILD-TYPE" "ARPP21 WILD-TYPE" "ARPP21 WILD-TYPE" 
      TCGA-49-4505       TCGA-49-4506       TCGA-49-4507       TCGA-49-4510 
"ARPP21 WILD-TYPE" "ARPP21 WILD-TYPE" "ARPP21 WILD-TYPE" "ARPP21 WILD-TYPE" 
      TCGA-49-4512       TCGA-49-4514       TCGA-49-6742       TCGA-49-6743 
"ARPP21 WILD-TYPE" "ARPP21 WILD-TYPE" "ARPP21 WILD-TYPE" "ARPP21 WILD-TYPE" 
      TCGA-49-6744       TCGA-49-6745       TCGA-50-5044       TCGA-50-5045 
  "ARPP21 MUTATED" "ARPP21 WILD-TYPE" "ARPP21 WILD-TYPE" "ARPP21 WILD-TYPE" 
      TCGA-50-5049       TCGA-50-5051       TCGA-50-5055       TCGA-50-5066 
"ARPP21 WILD-TYPE" "ARPP21 WILD-TYPE" "ARPP21 WILD-TYPE"   "ARPP21 MUTATED" 
      TCGA-50-5068       TCGA-50-5072       TCGA-50-5930       TCGA-50-5931 
"ARPP21 WILD-TYPE" "ARPP21 WILD-TYPE" "ARPP21 WILD-TYPE" "ARPP21 WILD-TYPE" 
      TCGA-50-5932       TCGA-50-5933       TCGA-50-5935       TCGA-50-5936 
"ARPP21 WILD-TYPE" "ARPP21 WILD-TYPE" "ARPP21 WILD-TYPE" "ARPP21 WILD-TYPE" 
      TCGA-50-5939       TCGA-50-5941       TCGA-50-5942       TCGA-50-5944 
"ARPP21 WILD-TYPE" "ARPP21 WILD-TYPE" "ARPP21 WILD-TYPE" "ARPP21 WILD-TYPE" 
      TCGA-50-5946       TCGA-50-6590       TCGA-50-6591       TCGA-50-6592 
"ARPP21 WILD-TYPE" "ARPP21 WILD-TYPE" "ARPP21 WILD-TYPE" "ARPP21 WILD-TYPE" 
      TCGA-50-6593       TCGA-50-6594       TCGA-50-6595       TCGA-50-6597 
"ARPP21 WILD-TYPE" "ARPP21 WILD-TYPE" "ARPP21 WILD-TYPE" "ARPP21 WILD-TYPE" 
      TCGA-55-1592       TCGA-55-1594       TCGA-55-1595       TCGA-55-1596 
"ARPP21 WILD-TYPE" "ARPP21 WILD-TYPE" "ARPP21 WILD-TYPE"   "ARPP21 MUTATED" 
      TCGA-55-5899       TCGA-55-6543       TCGA-55-6642       TCGA-55-6712 
"ARPP21 WILD-TYPE" "ARPP21 WILD-TYPE" "ARPP21 WILD-TYPE" "ARPP21 WILD-TYPE" 
      TCGA-64-1676       TCGA-64-1677       TCGA-64-1678       TCGA-64-1680 
"ARPP21 WILD-TYPE" "ARPP21 WILD-TYPE" "ARPP21 WILD-TYPE" "ARPP21 WILD-TYPE" 
      TCGA-64-5774       TCGA-64-5775       TCGA-64-5778       TCGA-64-5779 
"ARPP21 WILD-TYPE"   "ARPP21 MUTATED"   "ARPP21 MUTATED" "ARPP21 WILD-TYPE" 
      TCGA-64-5781       TCGA-64-5815       TCGA-67-3770       TCGA-67-3771 
"ARPP21 WILD-TYPE" "ARPP21 WILD-TYPE" "ARPP21 WILD-TYPE" "ARPP21 WILD-TYPE" 
      TCGA-67-3772       TCGA-67-3773       TCGA-67-3774       TCGA-67-6215 
"ARPP21 WILD-TYPE" "ARPP21 WILD-TYPE" "ARPP21 WILD-TYPE" "ARPP21 WILD-TYPE" 
      TCGA-67-6216       TCGA-67-6217       TCGA-71-6725       TCGA-73-4658 
"ARPP21 WILD-TYPE" "ARPP21 WILD-TYPE" "ARPP21 WILD-TYPE" "ARPP21 WILD-TYPE" 
      TCGA-73-4659       TCGA-73-4662       TCGA-73-4666       TCGA-73-4668 
"ARPP21 WILD-TYPE" "ARPP21 WILD-TYPE" "ARPP21 WILD-TYPE" "ARPP21 WILD-TYPE" 
      TCGA-73-4670       TCGA-73-4675       TCGA-73-4676       TCGA-73-4677 
"ARPP21 WILD-TYPE" "ARPP21 WILD-TYPE" "ARPP21 WILD-TYPE" "ARPP21 WILD-TYPE" 
      TCGA-91-6828       TCGA-91-6829       TCGA-91-6831       TCGA-91-6835 
"ARPP21 WILD-TYPE" "ARPP21 WILD-TYPE" "ARPP21 WILD-TYPE" "ARPP21 WILD-TYPE" 
      TCGA-91-6836 
"ARPP21 WILD-TYPE" 
      TCGA-05-4249       TCGA-05-4250       TCGA-05-4382       TCGA-05-4384 
"ARPP21 WILD-TYPE" "ARPP21 WILD-TYPE"   "ARPP21 MUTATED" "ARPP21 WILD-TYPE" 
      TCGA-05-4390       TCGA-05-4396       TCGA-05-4397       TCGA-05-4398 
"ARPP21 WILD-TYPE"   "ARPP21 MUTATED" "ARPP21 WILD-TYPE"   "ARPP21 MUTATED" 
      TCGA-05-4402       TCGA-05-4405       TCGA-05-4415       TCGA-05-4417 
"ARPP21 WILD-TYPE" "ARPP21 WILD-TYPE" "ARPP21 WILD-TYPE" "ARPP21 WILD-TYPE" 
      TCGA-05-4418       TCGA-05-4420       TCGA-05-4424       TCGA-05-4426 
"ARPP21 WILD-TYPE" "ARPP21 WILD-TYPE" "ARPP21 WILD-TYPE" "ARPP21 WILD-TYPE" 
      TCGA-05-4427       TCGA-05-4430       TCGA-05-4432       TCGA-05-4433 
  "ARPP21 MUTATED" "ARPP21 WILD-TYPE" "ARPP21 WILD-TYPE" "ARPP21 WILD-TYPE" 
      TCGA-05-4434       TCGA-05-5420       TCGA-05-5423       TCGA-05-5425 
"ARPP21 WILD-TYPE" "ARPP21 WILD-TYPE" "ARPP21 WILD-TYPE" "ARPP21 WILD-TYPE" 
      TCGA-05-5429       TCGA-05-5715       TCGA-35-3615       TCGA-35-4122 
"ARPP21 WILD-TYPE" "ARPP21 WILD-TYPE" "ARPP21 WILD-TYPE" "ARPP21 WILD-TYPE" 
      TCGA-35-4123       TCGA-35-5375       TCGA-38-4625       TCGA-38-4626 
"ARPP21 WILD-TYPE" "ARPP21 WILD-TYPE" "ARPP21 WILD-TYPE" "ARPP21 WILD-TYPE" 
      TCGA-38-4627       TCGA-38-4628       TCGA-38-4629       TCGA-38-4630 
"ARPP21 WILD-TYPE" "ARPP21 WILD-TYPE" "ARPP21 WILD-TYPE" "ARPP21 WILD-TYPE" 
      TCGA-38-4631       TCGA-38-4632       TCGA-38-6178       TCGA-44-2655 
"ARPP21 WILD-TYPE"   "ARPP21 MUTATED" "ARPP21 WILD-TYPE"   "ARPP21 MUTATED" 
      TCGA-44-2656       TCGA-44-2657       TCGA-44-2659       TCGA-44-2661 
"ARPP21 WILD-TYPE" "ARPP21 WILD-TYPE" "ARPP21 WILD-TYPE" "ARPP21 WILD-TYPE" 
      TCGA-44-2662       TCGA-44-2665       TCGA-44-2666       TCGA-44-2668 
"ARPP21 WILD-TYPE" "ARPP21 WILD-TYPE" "ARPP21 WILD-TYPE" "ARPP21 WILD-TYPE" 
      TCGA-44-3396       TCGA-44-3398       TCGA-44-3918       TCGA-44-3919 
"ARPP21 WILD-TYPE" "ARPP21 WILD-TYPE" "ARPP21 WILD-TYPE" "ARPP21 WILD-TYPE" 
      TCGA-44-4112       TCGA-44-5643       TCGA-44-5645       TCGA-44-6144 
"ARPP21 WILD-TYPE" "ARPP21 WILD-TYPE" "ARPP21 WILD-TYPE" "ARPP21 WILD-TYPE" 
      TCGA-44-6145       TCGA-44-6146       TCGA-44-6147       TCGA-44-6148 
"ARPP21 WILD-TYPE" "ARPP21 WILD-TYPE" "ARPP21 WILD-TYPE" "ARPP21 WILD-TYPE" 
      TCGA-44-6774       TCGA-44-6775       TCGA-44-6776       TCGA-44-6777 
"ARPP21 WILD-TYPE" "ARPP21 WILD-TYPE" "ARPP21 WILD-TYPE" "ARPP21 WILD-TYPE" 
      TCGA-44-6778       TCGA-44-6779       TCGA-49-4486       TCGA-49-4487 
"ARPP21 WILD-TYPE" "ARPP21 WILD-TYPE" "ARPP21 WILD-TYPE" "ARPP21 WILD-TYPE" 
      TCGA-49-4488       TCGA-49-4490       TCGA-49-4494       TCGA-49-4501 
  "ARPP21 MUTATED" "ARPP21 WILD-TYPE" "ARPP21 WILD-TYPE" "ARPP21 WILD-TYPE" 
      TCGA-49-4505       TCGA-49-4506       TCGA-49-4507       TCGA-49-4510 
"ARPP21 WILD-TYPE" "ARPP21 WILD-TYPE" "ARPP21 WILD-TYPE" "ARPP21 WILD-TYPE" 
      TCGA-49-4512       TCGA-49-4514       TCGA-49-6742       TCGA-49-6743 
"ARPP21 WILD-TYPE" "ARPP21 WILD-TYPE" "ARPP21 WILD-TYPE" "ARPP21 WILD-TYPE" 
      TCGA-49-6744       TCGA-49-6745       TCGA-50-5044       TCGA-50-5045 
  "ARPP21 MUTATED" "ARPP21 WILD-TYPE" "ARPP21 WILD-TYPE" "ARPP21 WILD-TYPE" 
      TCGA-50-5049       TCGA-50-5051       TCGA-50-5055       TCGA-50-5066 
"ARPP21 WILD-TYPE" "ARPP21 WILD-TYPE" "ARPP21 WILD-TYPE"   "ARPP21 MUTATED" 
      TCGA-50-5068       TCGA-50-5072       TCGA-50-5930       TCGA-50-5931 
"ARPP21 WILD-TYPE" "ARPP21 WILD-TYPE" "ARPP21 WILD-TYPE" "ARPP21 WILD-TYPE" 
      TCGA-50-5932       TCGA-50-5933       TCGA-50-5935       TCGA-50-5936 
"ARPP21 WILD-TYPE" "ARPP21 WILD-TYPE" "ARPP21 WILD-TYPE" "ARPP21 WILD-TYPE" 
      TCGA-50-5939       TCGA-50-5941       TCGA-50-5942       TCGA-50-5944 
"ARPP21 WILD-TYPE" "ARPP21 WILD-TYPE" "ARPP21 WILD-TYPE" "ARPP21 WILD-TYPE" 
      TCGA-50-5946       TCGA-50-6590       TCGA-50-6591       TCGA-50-6592 
"ARPP21 WILD-TYPE" "ARPP21 WILD-TYPE" "ARPP21 WILD-TYPE" "ARPP21 WILD-TYPE" 
      TCGA-50-6593       TCGA-50-6594       TCGA-50-6595       TCGA-50-6597 
"ARPP21 WILD-TYPE" "ARPP21 WILD-TYPE" "ARPP21 WILD-TYPE" "ARPP21 WILD-TYPE" 
      TCGA-55-1592       TCGA-55-1594       TCGA-55-1595       TCGA-55-1596 
"ARPP21 WILD-TYPE" "ARPP21 WILD-TYPE" "ARPP21 WILD-TYPE"   "ARPP21 MUTATED" 
      TCGA-55-5899       TCGA-55-6543       TCGA-55-6642       TCGA-55-6712 
"ARPP21 WILD-TYPE" "ARPP21 WILD-TYPE" "ARPP21 WILD-TYPE" "ARPP21 WILD-TYPE" 
      TCGA-64-1676       TCGA-64-1677       TCGA-64-1678       TCGA-64-1680 
"ARPP21 WILD-TYPE" "ARPP21 WILD-TYPE" "ARPP21 WILD-TYPE" "ARPP21 WILD-TYPE" 
      TCGA-64-5774       TCGA-64-5775       TCGA-64-5778       TCGA-64-5779 
"ARPP21 WILD-TYPE"   "ARPP21 MUTATED"   "ARPP21 MUTATED" "ARPP21 WILD-TYPE" 
      TCGA-64-5781       TCGA-64-5815       TCGA-67-3770       TCGA-67-3771 
"ARPP21 WILD-TYPE" "ARPP21 WILD-TYPE" "ARPP21 WILD-TYPE" "ARPP21 WILD-TYPE" 
      TCGA-67-3772       TCGA-67-3773       TCGA-67-3774       TCGA-67-6215 
"ARPP21 WILD-TYPE" "ARPP21 WILD-TYPE" "ARPP21 WILD-TYPE" "ARPP21 WILD-TYPE" 
      TCGA-67-6216       TCGA-67-6217       TCGA-71-6725       TCGA-73-4658 
"ARPP21 WILD-TYPE" "ARPP21 WILD-TYPE" "ARPP21 WILD-TYPE" "ARPP21 WILD-TYPE" 
      TCGA-73-4659       TCGA-73-4662       TCGA-73-4666       TCGA-73-4668 
"ARPP21 WILD-TYPE" "ARPP21 WILD-TYPE" "ARPP21 WILD-TYPE" "ARPP21 WILD-TYPE" 
      TCGA-73-4670       TCGA-73-4675       TCGA-73-4676       TCGA-73-4677 
"ARPP21 WILD-TYPE" "ARPP21 WILD-TYPE" "ARPP21 WILD-TYPE" "ARPP21 WILD-TYPE" 
      TCGA-91-6828       TCGA-91-6829       TCGA-91-6831       TCGA-91-6835 
"ARPP21 WILD-TYPE" "ARPP21 WILD-TYPE" "ARPP21 WILD-TYPE" "ARPP21 WILD-TYPE" 
      TCGA-91-6836 
"ARPP21 WILD-TYPE" 
[1] "hr=" "1.2"
D141V2, continuous
D141V3, binary
[1] "tbl2"
                  cls
clus               [,1] [,2]
  ARPP21 MUTATED      6    9
  ARPP21 WILD-TYPE   87   70
        clus
vv       ARPP21 MUTATED ARPP21 WILD-TYPE
  FEMALE              6               87
  MALE                9               70
D141V4, continuous
[1] "Remove cluster labels:" "ARPP21 MUTATED"        
clus
  ARPP21 MUTATED ARPP21 WILD-TYPE 
               2               10 
      TCGA-35-4122       TCGA-35-4123       TCGA-35-5375       TCGA-64-1677 
"ARPP21 WILD-TYPE" "ARPP21 WILD-TYPE" "ARPP21 WILD-TYPE" "ARPP21 WILD-TYPE" 
      TCGA-71-6725       TCGA-73-4659       TCGA-73-4662       TCGA-73-4666 
"ARPP21 WILD-TYPE" "ARPP21 WILD-TYPE" "ARPP21 WILD-TYPE" "ARPP21 WILD-TYPE" 
      TCGA-73-4668       TCGA-73-4676 
"ARPP21 WILD-TYPE" "ARPP21 WILD-TYPE" 
D141V5, multiclass
D141V6, multiclass
    clus
vv   ARPP21 MUTATED ARPP21 WILD-TYPE
  T1              2               39
  T2             10               98
  T3              0               14
  T4              3                5
D141V7, multiclass
       clus
vv      ARPP21 MUTATED ARPP21 WILD-TYPE
  N0                 8               87
  N1                 5               32
  N2+N3              2               33
D141V8, multiclass
    clus
vv   ARPP21 MUTATED ARPP21 WILD-TYPE
  M0             12              125
  M1              1                8
  MX              2               20
D141V9, multiclass
     clus
vv    ARPP21 MUTATED ARPP21 WILD-TYPE
  I                7               81
  II               3               30
  III              4               35
  IV               1                8
D141V10, binary
[1] "tbl2"
                  cls
clus               [,1] [,2]
  ARPP21 MUTATED      0   15
  ARPP21 WILD-TYPE   16  141
     clus
vv    ARPP21 MUTATED ARPP21 WILD-TYPE
  NO               0               16
  YES             15              141
D141V11, continuous
D141V12, continuous
D141V13, multiclass
                                             clus
vv                                            ARPP21 MUTATED ARPP21 WILD-TYPE
  CURRENT REFORMED SMOKER FOR < OR = 15 YEARS              6               56
  CURRENT REFORMED SMOKER FOR > 15 YEARS                   4               42
  CURRENT SMOKER                                           3               25
  LIFELONG NON-SMOKER                                      2               22
D141V14, continuous

Clustering(142) Variable = DEFB112 MUTATION ANALYSIS
D142V1, survival
                   sevent
clus2                0  1
  DEFB112 MUTATED    3  1
  DEFB112 WILD-TYPE 96 49
  DEFB112 MUTATED DEFB112 WILD-TYPE 
                4               145 
  DEFB112 MUTATED DEFB112 WILD-TYPE 
                1                49 
$`DEFB112 MUTATED`
TCGA-44-2656 TCGA-55-1592 TCGA-64-5779 TCGA-73-4666 
       19.10        23.05        16.67        20.28 

$`DEFB112 WILD-TYPE`
TCGA-05-4249 TCGA-05-4250 TCGA-05-4382 TCGA-05-4384 TCGA-05-4390 TCGA-05-4396 
       38.07         3.98        19.92        14.01        37.02         9.96 
TCGA-05-4397 TCGA-05-4398 TCGA-05-4402 TCGA-05-4405 TCGA-05-4415 TCGA-05-4417 
       24.03        47.05         8.02        20.05         2.96        14.93 
TCGA-05-4418 TCGA-05-4420 TCGA-05-4424 TCGA-05-4426 TCGA-05-4427 TCGA-05-4430 
        8.98        29.95        30.02        26.01        26.01        25.02 
TCGA-05-4432 TCGA-05-4433 TCGA-05-4434 TCGA-05-5420 TCGA-05-5423 TCGA-05-5425 
       25.02        24.00        15.02         1.02         4.96         2.96 
TCGA-05-5429 TCGA-05-5715 TCGA-35-3615 TCGA-35-4122 TCGA-35-4123 TCGA-35-5375 
        0.99         2.04         0.46         7.36         5.95         8.68 
TCGA-38-4625 TCGA-38-4626 TCGA-38-4627 TCGA-38-4628 TCGA-38-4629 TCGA-38-4630 
       47.61        85.32        37.71        49.02        28.37        35.28 
TCGA-38-4631 TCGA-38-4632 TCGA-38-6178 TCGA-44-2655 TCGA-44-2657 TCGA-44-2659 
       11.64        44.61         5.19        18.87        13.15        17.39 
TCGA-44-2661 TCGA-44-2662 TCGA-44-2665 TCGA-44-2666 TCGA-44-2668 TCGA-44-3396 
        3.39        15.78        13.15         3.19         8.09        10.22 
TCGA-44-3398 TCGA-44-3918 TCGA-44-3919 TCGA-44-4112 TCGA-44-5643 TCGA-44-5645 
        8.32         6.44         6.21         4.60         3.48         6.84 
TCGA-44-6144 TCGA-44-6145 TCGA-44-6146 TCGA-44-6147 TCGA-44-6148 TCGA-44-6774 
        0.30         3.35         9.93         7.76         3.12         5.42 
TCGA-44-6775 TCGA-44-6776 TCGA-44-6777 TCGA-44-6778 TCGA-44-6779 TCGA-49-4486 
        2.70        63.72        32.45        36.49        16.41        76.21 
TCGA-49-4487 TCGA-49-4488 TCGA-49-4490 TCGA-49-4494 TCGA-49-4501 TCGA-49-4505 
       28.11        28.57        12.66        35.54        46.72        14.07 
TCGA-49-4506 TCGA-49-4507 TCGA-49-4510 TCGA-49-4512 TCGA-49-4514 TCGA-49-6742 
       32.84         8.81        29.46        29.75        43.20        15.02 
TCGA-49-6743 TCGA-49-6744 TCGA-49-6745 TCGA-50-5044 TCGA-50-5045 TCGA-50-5049 
       12.13        12.99         4.93        20.48        71.47        48.82 
TCGA-50-5051 TCGA-50-5055 TCGA-50-5066 TCGA-50-5068 TCGA-50-5072 TCGA-50-5930 
       14.96        25.81         9.76        49.28         8.05         9.27 
TCGA-50-5931 TCGA-50-5932 TCGA-50-5933 TCGA-50-5935 TCGA-50-5936 TCGA-50-5939 
        8.78        35.87        77.88        21.47         8.45        15.12 
TCGA-50-5941 TCGA-50-5942 TCGA-50-5944 TCGA-50-5946 TCGA-50-6590 TCGA-50-6591 
        9.37         4.44        12.26        11.47        42.31         3.88 
TCGA-50-6592 TCGA-50-6593 TCGA-50-6594 TCGA-50-6595 TCGA-50-6597 TCGA-55-1594 
       25.51        11.05        12.16         6.21        33.37        38.73 
TCGA-55-1595 TCGA-55-1596 TCGA-55-5899 TCGA-55-6543 TCGA-55-6642 TCGA-55-6712 
       48.62        45.17         2.86         0.07        32.61         0.79 
TCGA-64-1676 TCGA-64-1677 TCGA-64-1678 TCGA-64-1680 TCGA-64-5774 TCGA-64-5775 
       56.81        20.65        39.09        37.02        83.84         0.10 
TCGA-64-5778 TCGA-64-5781 TCGA-64-5815 TCGA-67-3770 TCGA-67-3771 TCGA-67-3772 
       30.44        39.52         7.33         0.99         1.97         0.59 
TCGA-67-3773 TCGA-67-3774 TCGA-67-6215 TCGA-67-6216 TCGA-67-6217 TCGA-71-6725 
        2.04         0.59         0.89         0.69        13.87         2.01 
TCGA-73-4658 TCGA-73-4659 TCGA-73-4662 TCGA-73-4668 TCGA-73-4670 TCGA-73-4675 
       52.57        23.38        29.95        15.35         0.46         1.32 
TCGA-73-4676 TCGA-73-4677 TCGA-91-6828 TCGA-91-6829 TCGA-91-6831 TCGA-91-6835 
        4.01         1.25         1.22        41.33         1.28         1.15 
TCGA-91-6836 
        0.36 

  DEFB112 MUTATED DEFB112 WILD-TYPE 
            16.67              0.07 
  DEFB112 MUTATED DEFB112 WILD-TYPE 
            23.05             85.32 
  DEFB112 MUTATED DEFB112 WILD-TYPE 
            19.69             13.15 
[1] "16.7 - 23.1 (19.7)" "0.1 - 85.3 (13.2)" 
       TCGA-05-4249        TCGA-05-4250        TCGA-05-4382        TCGA-05-4384 
"DEFB112 WILD-TYPE" "DEFB112 WILD-TYPE" "DEFB112 WILD-TYPE" "DEFB112 WILD-TYPE" 
       TCGA-05-4390        TCGA-05-4396        TCGA-05-4397        TCGA-05-4398 
"DEFB112 WILD-TYPE" "DEFB112 WILD-TYPE" "DEFB112 WILD-TYPE" "DEFB112 WILD-TYPE" 
       TCGA-05-4402        TCGA-05-4405        TCGA-05-4415        TCGA-05-4417 
"DEFB112 WILD-TYPE" "DEFB112 WILD-TYPE" "DEFB112 WILD-TYPE" "DEFB112 WILD-TYPE" 
       TCGA-05-4418        TCGA-05-4420        TCGA-05-4424        TCGA-05-4426 
"DEFB112 WILD-TYPE" "DEFB112 WILD-TYPE" "DEFB112 WILD-TYPE" "DEFB112 WILD-TYPE" 
       TCGA-05-4427        TCGA-05-4430        TCGA-05-4432        TCGA-05-4433 
"DEFB112 WILD-TYPE" "DEFB112 WILD-TYPE" "DEFB112 WILD-TYPE" "DEFB112 WILD-TYPE" 
       TCGA-05-4434        TCGA-05-5420        TCGA-05-5423        TCGA-05-5425 
"DEFB112 WILD-TYPE" "DEFB112 WILD-TYPE" "DEFB112 WILD-TYPE" "DEFB112 WILD-TYPE" 
       TCGA-05-5429        TCGA-05-5715        TCGA-35-3615        TCGA-35-4122 
"DEFB112 WILD-TYPE" "DEFB112 WILD-TYPE" "DEFB112 WILD-TYPE" "DEFB112 WILD-TYPE" 
       TCGA-35-4123        TCGA-35-5375        TCGA-38-4625        TCGA-38-4626 
"DEFB112 WILD-TYPE" "DEFB112 WILD-TYPE" "DEFB112 WILD-TYPE" "DEFB112 WILD-TYPE" 
       TCGA-38-4627        TCGA-38-4628        TCGA-38-4629        TCGA-38-4630 
"DEFB112 WILD-TYPE" "DEFB112 WILD-TYPE" "DEFB112 WILD-TYPE" "DEFB112 WILD-TYPE" 
       TCGA-38-4631        TCGA-38-4632        TCGA-38-6178        TCGA-44-2655 
"DEFB112 WILD-TYPE" "DEFB112 WILD-TYPE" "DEFB112 WILD-TYPE" "DEFB112 WILD-TYPE" 
       TCGA-44-2656        TCGA-44-2657        TCGA-44-2659        TCGA-44-2661 
  "DEFB112 MUTATED" "DEFB112 WILD-TYPE" "DEFB112 WILD-TYPE" "DEFB112 WILD-TYPE" 
       TCGA-44-2662        TCGA-44-2665        TCGA-44-2666        TCGA-44-2668 
"DEFB112 WILD-TYPE" "DEFB112 WILD-TYPE" "DEFB112 WILD-TYPE" "DEFB112 WILD-TYPE" 
       TCGA-44-3396        TCGA-44-3398        TCGA-44-3918        TCGA-44-3919 
"DEFB112 WILD-TYPE" "DEFB112 WILD-TYPE" "DEFB112 WILD-TYPE" "DEFB112 WILD-TYPE" 
       TCGA-44-4112        TCGA-44-5643        TCGA-44-5645        TCGA-44-6144 
"DEFB112 WILD-TYPE" "DEFB112 WILD-TYPE" "DEFB112 WILD-TYPE" "DEFB112 WILD-TYPE" 
       TCGA-44-6145        TCGA-44-6146        TCGA-44-6147        TCGA-44-6148 
"DEFB112 WILD-TYPE" "DEFB112 WILD-TYPE" "DEFB112 WILD-TYPE" "DEFB112 WILD-TYPE" 
       TCGA-44-6774        TCGA-44-6775        TCGA-44-6776        TCGA-44-6777 
"DEFB112 WILD-TYPE" "DEFB112 WILD-TYPE" "DEFB112 WILD-TYPE" "DEFB112 WILD-TYPE" 
       TCGA-44-6778        TCGA-44-6779        TCGA-49-4486        TCGA-49-4487 
"DEFB112 WILD-TYPE" "DEFB112 WILD-TYPE" "DEFB112 WILD-TYPE" "DEFB112 WILD-TYPE" 
       TCGA-49-4488        TCGA-49-4490        TCGA-49-4494        TCGA-49-4501 
"DEFB112 WILD-TYPE" "DEFB112 WILD-TYPE" "DEFB112 WILD-TYPE" "DEFB112 WILD-TYPE" 
       TCGA-49-4505        TCGA-49-4506        TCGA-49-4507        TCGA-49-4510 
"DEFB112 WILD-TYPE" "DEFB112 WILD-TYPE" "DEFB112 WILD-TYPE" "DEFB112 WILD-TYPE" 
       TCGA-49-4512        TCGA-49-4514        TCGA-49-6742        TCGA-49-6743 
"DEFB112 WILD-TYPE" "DEFB112 WILD-TYPE" "DEFB112 WILD-TYPE" "DEFB112 WILD-TYPE" 
       TCGA-49-6744        TCGA-49-6745        TCGA-50-5044        TCGA-50-5045 
"DEFB112 WILD-TYPE" "DEFB112 WILD-TYPE" "DEFB112 WILD-TYPE" "DEFB112 WILD-TYPE" 
       TCGA-50-5049        TCGA-50-5051        TCGA-50-5055        TCGA-50-5066 
"DEFB112 WILD-TYPE" "DEFB112 WILD-TYPE" "DEFB112 WILD-TYPE" "DEFB112 WILD-TYPE" 
       TCGA-50-5068        TCGA-50-5072        TCGA-50-5930        TCGA-50-5931 
"DEFB112 WILD-TYPE" "DEFB112 WILD-TYPE" "DEFB112 WILD-TYPE" "DEFB112 WILD-TYPE" 
       TCGA-50-5932        TCGA-50-5933        TCGA-50-5935        TCGA-50-5936 
"DEFB112 WILD-TYPE" "DEFB112 WILD-TYPE" "DEFB112 WILD-TYPE" "DEFB112 WILD-TYPE" 
       TCGA-50-5939        TCGA-50-5941        TCGA-50-5942        TCGA-50-5944 
"DEFB112 WILD-TYPE" "DEFB112 WILD-TYPE" "DEFB112 WILD-TYPE" "DEFB112 WILD-TYPE" 
       TCGA-50-5946        TCGA-50-6590        TCGA-50-6591        TCGA-50-6592 
"DEFB112 WILD-TYPE" "DEFB112 WILD-TYPE" "DEFB112 WILD-TYPE" "DEFB112 WILD-TYPE" 
       TCGA-50-6593        TCGA-50-6594        TCGA-50-6595        TCGA-50-6597 
"DEFB112 WILD-TYPE" "DEFB112 WILD-TYPE" "DEFB112 WILD-TYPE" "DEFB112 WILD-TYPE" 
       TCGA-55-1592        TCGA-55-1594        TCGA-55-1595        TCGA-55-1596 
  "DEFB112 MUTATED" "DEFB112 WILD-TYPE" "DEFB112 WILD-TYPE" "DEFB112 WILD-TYPE" 
       TCGA-55-5899        TCGA-55-6543        TCGA-55-6642        TCGA-55-6712 
"DEFB112 WILD-TYPE" "DEFB112 WILD-TYPE" "DEFB112 WILD-TYPE" "DEFB112 WILD-TYPE" 
       TCGA-64-1676        TCGA-64-1677        TCGA-64-1678        TCGA-64-1680 
"DEFB112 WILD-TYPE" "DEFB112 WILD-TYPE" "DEFB112 WILD-TYPE" "DEFB112 WILD-TYPE" 
       TCGA-64-5774        TCGA-64-5775        TCGA-64-5778        TCGA-64-5779 
"DEFB112 WILD-TYPE" "DEFB112 WILD-TYPE" "DEFB112 WILD-TYPE"   "DEFB112 MUTATED" 
       TCGA-64-5781        TCGA-64-5815        TCGA-67-3770        TCGA-67-3771 
"DEFB112 WILD-TYPE" "DEFB112 WILD-TYPE" "DEFB112 WILD-TYPE" "DEFB112 WILD-TYPE" 
       TCGA-67-3772        TCGA-67-3773        TCGA-67-3774        TCGA-67-6215 
"DEFB112 WILD-TYPE" "DEFB112 WILD-TYPE" "DEFB112 WILD-TYPE" "DEFB112 WILD-TYPE" 
       TCGA-67-6216        TCGA-67-6217        TCGA-71-6725        TCGA-73-4658 
"DEFB112 WILD-TYPE" "DEFB112 WILD-TYPE" "DEFB112 WILD-TYPE" "DEFB112 WILD-TYPE" 
       TCGA-73-4659        TCGA-73-4662        TCGA-73-4666        TCGA-73-4668 
"DEFB112 WILD-TYPE" "DEFB112 WILD-TYPE"   "DEFB112 MUTATED" "DEFB112 WILD-TYPE" 
       TCGA-73-4670        TCGA-73-4675        TCGA-73-4676        TCGA-73-4677 
"DEFB112 WILD-TYPE" "DEFB112 WILD-TYPE" "DEFB112 WILD-TYPE" "DEFB112 WILD-TYPE" 
       TCGA-91-6828        TCGA-91-6829        TCGA-91-6831        TCGA-91-6835 
"DEFB112 WILD-TYPE" "DEFB112 WILD-TYPE" "DEFB112 WILD-TYPE" "DEFB112 WILD-TYPE" 
       TCGA-91-6836 
"DEFB112 WILD-TYPE" 
       TCGA-05-4249        TCGA-05-4250        TCGA-05-4382        TCGA-05-4384 
"DEFB112 WILD-TYPE" "DEFB112 WILD-TYPE" "DEFB112 WILD-TYPE" "DEFB112 WILD-TYPE" 
       TCGA-05-4390        TCGA-05-4396        TCGA-05-4397        TCGA-05-4398 
"DEFB112 WILD-TYPE" "DEFB112 WILD-TYPE" "DEFB112 WILD-TYPE" "DEFB112 WILD-TYPE" 
       TCGA-05-4402        TCGA-05-4405        TCGA-05-4415        TCGA-05-4417 
"DEFB112 WILD-TYPE" "DEFB112 WILD-TYPE" "DEFB112 WILD-TYPE" "DEFB112 WILD-TYPE" 
       TCGA-05-4418        TCGA-05-4420        TCGA-05-4424        TCGA-05-4426 
"DEFB112 WILD-TYPE" "DEFB112 WILD-TYPE" "DEFB112 WILD-TYPE" "DEFB112 WILD-TYPE" 
       TCGA-05-4427        TCGA-05-4430        TCGA-05-4432        TCGA-05-4433 
"DEFB112 WILD-TYPE" "DEFB112 WILD-TYPE" "DEFB112 WILD-TYPE" "DEFB112 WILD-TYPE" 
       TCGA-05-4434        TCGA-05-5420        TCGA-05-5423        TCGA-05-5425 
"DEFB112 WILD-TYPE" "DEFB112 WILD-TYPE" "DEFB112 WILD-TYPE" "DEFB112 WILD-TYPE" 
       TCGA-05-5429        TCGA-05-5715        TCGA-35-3615        TCGA-35-4122 
"DEFB112 WILD-TYPE" "DEFB112 WILD-TYPE" "DEFB112 WILD-TYPE" "DEFB112 WILD-TYPE" 
       TCGA-35-4123        TCGA-35-5375        TCGA-38-4625        TCGA-38-4626 
"DEFB112 WILD-TYPE" "DEFB112 WILD-TYPE" "DEFB112 WILD-TYPE" "DEFB112 WILD-TYPE" 
       TCGA-38-4627        TCGA-38-4628        TCGA-38-4629        TCGA-38-4630 
"DEFB112 WILD-TYPE" "DEFB112 WILD-TYPE" "DEFB112 WILD-TYPE" "DEFB112 WILD-TYPE" 
       TCGA-38-4631        TCGA-38-4632        TCGA-38-6178        TCGA-44-2655 
"DEFB112 WILD-TYPE" "DEFB112 WILD-TYPE" "DEFB112 WILD-TYPE" "DEFB112 WILD-TYPE" 
       TCGA-44-2656        TCGA-44-2657        TCGA-44-2659        TCGA-44-2661 
  "DEFB112 MUTATED" "DEFB112 WILD-TYPE" "DEFB112 WILD-TYPE" "DEFB112 WILD-TYPE" 
       TCGA-44-2662        TCGA-44-2665        TCGA-44-2666        TCGA-44-2668 
"DEFB112 WILD-TYPE" "DEFB112 WILD-TYPE" "DEFB112 WILD-TYPE" "DEFB112 WILD-TYPE" 
       TCGA-44-3396        TCGA-44-3398        TCGA-44-3918        TCGA-44-3919 
"DEFB112 WILD-TYPE" "DEFB112 WILD-TYPE" "DEFB112 WILD-TYPE" "DEFB112 WILD-TYPE" 
       TCGA-44-4112        TCGA-44-5643        TCGA-44-5645        TCGA-44-6144 
"DEFB112 WILD-TYPE" "DEFB112 WILD-TYPE" "DEFB112 WILD-TYPE" "DEFB112 WILD-TYPE" 
       TCGA-44-6145        TCGA-44-6146        TCGA-44-6147        TCGA-44-6148 
"DEFB112 WILD-TYPE" "DEFB112 WILD-TYPE" "DEFB112 WILD-TYPE" "DEFB112 WILD-TYPE" 
       TCGA-44-6774        TCGA-44-6775        TCGA-44-6776        TCGA-44-6777 
"DEFB112 WILD-TYPE" "DEFB112 WILD-TYPE" "DEFB112 WILD-TYPE" "DEFB112 WILD-TYPE" 
       TCGA-44-6778        TCGA-44-6779        TCGA-49-4486        TCGA-49-4487 
"DEFB112 WILD-TYPE" "DEFB112 WILD-TYPE" "DEFB112 WILD-TYPE" "DEFB112 WILD-TYPE" 
       TCGA-49-4488        TCGA-49-4490        TCGA-49-4494        TCGA-49-4501 
"DEFB112 WILD-TYPE" "DEFB112 WILD-TYPE" "DEFB112 WILD-TYPE" "DEFB112 WILD-TYPE" 
       TCGA-49-4505        TCGA-49-4506        TCGA-49-4507        TCGA-49-4510 
"DEFB112 WILD-TYPE" "DEFB112 WILD-TYPE" "DEFB112 WILD-TYPE" "DEFB112 WILD-TYPE" 
       TCGA-49-4512        TCGA-49-4514        TCGA-49-6742        TCGA-49-6743 
"DEFB112 WILD-TYPE" "DEFB112 WILD-TYPE" "DEFB112 WILD-TYPE" "DEFB112 WILD-TYPE" 
       TCGA-49-6744        TCGA-49-6745        TCGA-50-5044        TCGA-50-5045 
"DEFB112 WILD-TYPE" "DEFB112 WILD-TYPE" "DEFB112 WILD-TYPE" "DEFB112 WILD-TYPE" 
       TCGA-50-5049        TCGA-50-5051        TCGA-50-5055        TCGA-50-5066 
"DEFB112 WILD-TYPE" "DEFB112 WILD-TYPE" "DEFB112 WILD-TYPE" "DEFB112 WILD-TYPE" 
       TCGA-50-5068        TCGA-50-5072        TCGA-50-5930        TCGA-50-5931 
"DEFB112 WILD-TYPE" "DEFB112 WILD-TYPE" "DEFB112 WILD-TYPE" "DEFB112 WILD-TYPE" 
       TCGA-50-5932        TCGA-50-5933        TCGA-50-5935        TCGA-50-5936 
"DEFB112 WILD-TYPE" "DEFB112 WILD-TYPE" "DEFB112 WILD-TYPE" "DEFB112 WILD-TYPE" 
       TCGA-50-5939        TCGA-50-5941        TCGA-50-5942        TCGA-50-5944 
"DEFB112 WILD-TYPE" "DEFB112 WILD-TYPE" "DEFB112 WILD-TYPE" "DEFB112 WILD-TYPE" 
       TCGA-50-5946        TCGA-50-6590        TCGA-50-6591        TCGA-50-6592 
"DEFB112 WILD-TYPE" "DEFB112 WILD-TYPE" "DEFB112 WILD-TYPE" "DEFB112 WILD-TYPE" 
       TCGA-50-6593        TCGA-50-6594        TCGA-50-6595        TCGA-50-6597 
"DEFB112 WILD-TYPE" "DEFB112 WILD-TYPE" "DEFB112 WILD-TYPE" "DEFB112 WILD-TYPE" 
       TCGA-55-1592        TCGA-55-1594        TCGA-55-1595        TCGA-55-1596 
  "DEFB112 MUTATED" "DEFB112 WILD-TYPE" "DEFB112 WILD-TYPE" "DEFB112 WILD-TYPE" 
       TCGA-55-5899        TCGA-55-6543        TCGA-55-6642        TCGA-55-6712 
"DEFB112 WILD-TYPE" "DEFB112 WILD-TYPE" "DEFB112 WILD-TYPE" "DEFB112 WILD-TYPE" 
       TCGA-64-1676        TCGA-64-1677        TCGA-64-1678        TCGA-64-1680 
"DEFB112 WILD-TYPE" "DEFB112 WILD-TYPE" "DEFB112 WILD-TYPE" "DEFB112 WILD-TYPE" 
       TCGA-64-5774        TCGA-64-5775        TCGA-64-5778        TCGA-64-5779 
"DEFB112 WILD-TYPE" "DEFB112 WILD-TYPE" "DEFB112 WILD-TYPE"   "DEFB112 MUTATED" 
       TCGA-64-5781        TCGA-64-5815        TCGA-67-3770        TCGA-67-3771 
"DEFB112 WILD-TYPE" "DEFB112 WILD-TYPE" "DEFB112 WILD-TYPE" "DEFB112 WILD-TYPE" 
       TCGA-67-3772        TCGA-67-3773        TCGA-67-3774        TCGA-67-6215 
"DEFB112 WILD-TYPE" "DEFB112 WILD-TYPE" "DEFB112 WILD-TYPE" "DEFB112 WILD-TYPE" 
       TCGA-67-6216        TCGA-67-6217        TCGA-71-6725        TCGA-73-4658 
"DEFB112 WILD-TYPE" "DEFB112 WILD-TYPE" "DEFB112 WILD-TYPE" "DEFB112 WILD-TYPE" 
       TCGA-73-4659        TCGA-73-4662        TCGA-73-4666        TCGA-73-4668 
"DEFB112 WILD-TYPE" "DEFB112 WILD-TYPE"   "DEFB112 MUTATED" "DEFB112 WILD-TYPE" 
       TCGA-73-4670        TCGA-73-4675        TCGA-73-4676        TCGA-73-4677 
"DEFB112 WILD-TYPE" "DEFB112 WILD-TYPE" "DEFB112 WILD-TYPE" "DEFB112 WILD-TYPE" 
       TCGA-91-6828        TCGA-91-6829        TCGA-91-6831        TCGA-91-6835 
"DEFB112 WILD-TYPE" "DEFB112 WILD-TYPE" "DEFB112 WILD-TYPE" "DEFB112 WILD-TYPE" 
       TCGA-91-6836 
"DEFB112 WILD-TYPE" 
       TCGA-05-4249        TCGA-05-4250        TCGA-05-4382        TCGA-05-4384 
"DEFB112 WILD-TYPE" "DEFB112 WILD-TYPE" "DEFB112 WILD-TYPE" "DEFB112 WILD-TYPE" 
       TCGA-05-4390        TCGA-05-4396        TCGA-05-4397        TCGA-05-4398 
"DEFB112 WILD-TYPE" "DEFB112 WILD-TYPE" "DEFB112 WILD-TYPE" "DEFB112 WILD-TYPE" 
       TCGA-05-4402        TCGA-05-4405        TCGA-05-4415        TCGA-05-4417 
"DEFB112 WILD-TYPE" "DEFB112 WILD-TYPE" "DEFB112 WILD-TYPE" "DEFB112 WILD-TYPE" 
       TCGA-05-4418        TCGA-05-4420        TCGA-05-4424        TCGA-05-4426 
"DEFB112 WILD-TYPE" "DEFB112 WILD-TYPE" "DEFB112 WILD-TYPE" "DEFB112 WILD-TYPE" 
       TCGA-05-4427        TCGA-05-4430        TCGA-05-4432        TCGA-05-4433 
"DEFB112 WILD-TYPE" "DEFB112 WILD-TYPE" "DEFB112 WILD-TYPE" "DEFB112 WILD-TYPE" 
       TCGA-05-4434        TCGA-05-5420        TCGA-05-5423        TCGA-05-5425 
"DEFB112 WILD-TYPE" "DEFB112 WILD-TYPE" "DEFB112 WILD-TYPE" "DEFB112 WILD-TYPE" 
       TCGA-05-5429        TCGA-05-5715        TCGA-35-3615        TCGA-35-4122 
"DEFB112 WILD-TYPE" "DEFB112 WILD-TYPE" "DEFB112 WILD-TYPE" "DEFB112 WILD-TYPE" 
       TCGA-35-4123        TCGA-35-5375        TCGA-38-4625        TCGA-38-4626 
"DEFB112 WILD-TYPE" "DEFB112 WILD-TYPE" "DEFB112 WILD-TYPE" "DEFB112 WILD-TYPE" 
       TCGA-38-4627        TCGA-38-4628        TCGA-38-4629        TCGA-38-4630 
"DEFB112 WILD-TYPE" "DEFB112 WILD-TYPE" "DEFB112 WILD-TYPE" "DEFB112 WILD-TYPE" 
       TCGA-38-4631        TCGA-38-4632        TCGA-38-6178        TCGA-44-2655 
"DEFB112 WILD-TYPE" "DEFB112 WILD-TYPE" "DEFB112 WILD-TYPE" "DEFB112 WILD-TYPE" 
       TCGA-44-2656        TCGA-44-2657        TCGA-44-2659        TCGA-44-2661 
  "DEFB112 MUTATED" "DEFB112 WILD-TYPE" "DEFB112 WILD-TYPE" "DEFB112 WILD-TYPE" 
       TCGA-44-2662        TCGA-44-2665        TCGA-44-2666        TCGA-44-2668 
"DEFB112 WILD-TYPE" "DEFB112 WILD-TYPE" "DEFB112 WILD-TYPE" "DEFB112 WILD-TYPE" 
       TCGA-44-3396        TCGA-44-3398        TCGA-44-3918        TCGA-44-3919 
"DEFB112 WILD-TYPE" "DEFB112 WILD-TYPE" "DEFB112 WILD-TYPE" "DEFB112 WILD-TYPE" 
       TCGA-44-4112        TCGA-44-5643        TCGA-44-5645        TCGA-44-6144 
"DEFB112 WILD-TYPE" "DEFB112 WILD-TYPE" "DEFB112 WILD-TYPE" "DEFB112 WILD-TYPE" 
       TCGA-44-6145        TCGA-44-6146        TCGA-44-6147        TCGA-44-6148 
"DEFB112 WILD-TYPE" "DEFB112 WILD-TYPE" "DEFB112 WILD-TYPE" "DEFB112 WILD-TYPE" 
       TCGA-44-6774        TCGA-44-6775        TCGA-44-6776        TCGA-44-6777 
"DEFB112 WILD-TYPE" "DEFB112 WILD-TYPE" "DEFB112 WILD-TYPE" "DEFB112 WILD-TYPE" 
       TCGA-44-6778        TCGA-44-6779        TCGA-49-4486        TCGA-49-4487 
"DEFB112 WILD-TYPE" "DEFB112 WILD-TYPE" "DEFB112 WILD-TYPE" "DEFB112 WILD-TYPE" 
       TCGA-49-4488        TCGA-49-4490        TCGA-49-4494        TCGA-49-4501 
"DEFB112 WILD-TYPE" "DEFB112 WILD-TYPE" "DEFB112 WILD-TYPE" "DEFB112 WILD-TYPE" 
       TCGA-49-4505        TCGA-49-4506        TCGA-49-4507        TCGA-49-4510 
"DEFB112 WILD-TYPE" "DEFB112 WILD-TYPE" "DEFB112 WILD-TYPE" "DEFB112 WILD-TYPE" 
       TCGA-49-4512        TCGA-49-4514        TCGA-49-6742        TCGA-49-6743 
"DEFB112 WILD-TYPE" "DEFB112 WILD-TYPE" "DEFB112 WILD-TYPE" "DEFB112 WILD-TYPE" 
       TCGA-49-6744        TCGA-49-6745        TCGA-50-5044        TCGA-50-5045 
"DEFB112 WILD-TYPE" "DEFB112 WILD-TYPE" "DEFB112 WILD-TYPE" "DEFB112 WILD-TYPE" 
       TCGA-50-5049        TCGA-50-5051        TCGA-50-5055        TCGA-50-5066 
"DEFB112 WILD-TYPE" "DEFB112 WILD-TYPE" "DEFB112 WILD-TYPE" "DEFB112 WILD-TYPE" 
       TCGA-50-5068        TCGA-50-5072        TCGA-50-5930        TCGA-50-5931 
"DEFB112 WILD-TYPE" "DEFB112 WILD-TYPE" "DEFB112 WILD-TYPE" "DEFB112 WILD-TYPE" 
       TCGA-50-5932        TCGA-50-5933        TCGA-50-5935        TCGA-50-5936 
"DEFB112 WILD-TYPE" "DEFB112 WILD-TYPE" "DEFB112 WILD-TYPE" "DEFB112 WILD-TYPE" 
       TCGA-50-5939        TCGA-50-5941        TCGA-50-5942        TCGA-50-5944 
"DEFB112 WILD-TYPE" "DEFB112 WILD-TYPE" "DEFB112 WILD-TYPE" "DEFB112 WILD-TYPE" 
       TCGA-50-5946        TCGA-50-6590        TCGA-50-6591        TCGA-50-6592 
"DEFB112 WILD-TYPE" "DEFB112 WILD-TYPE" "DEFB112 WILD-TYPE" "DEFB112 WILD-TYPE" 
       TCGA-50-6593        TCGA-50-6594        TCGA-50-6595        TCGA-50-6597 
"DEFB112 WILD-TYPE" "DEFB112 WILD-TYPE" "DEFB112 WILD-TYPE" "DEFB112 WILD-TYPE" 
       TCGA-55-1592        TCGA-55-1594        TCGA-55-1595        TCGA-55-1596 
  "DEFB112 MUTATED" "DEFB112 WILD-TYPE" "DEFB112 WILD-TYPE" "DEFB112 WILD-TYPE" 
       TCGA-55-5899        TCGA-55-6543        TCGA-55-6642        TCGA-55-6712 
"DEFB112 WILD-TYPE" "DEFB112 WILD-TYPE" "DEFB112 WILD-TYPE" "DEFB112 WILD-TYPE" 
       TCGA-64-1676        TCGA-64-1677        TCGA-64-1678        TCGA-64-1680 
"DEFB112 WILD-TYPE" "DEFB112 WILD-TYPE" "DEFB112 WILD-TYPE" "DEFB112 WILD-TYPE" 
       TCGA-64-5774        TCGA-64-5775        TCGA-64-5778        TCGA-64-5779 
"DEFB112 WILD-TYPE" "DEFB112 WILD-TYPE" "DEFB112 WILD-TYPE"   "DEFB112 MUTATED" 
       TCGA-64-5781        TCGA-64-5815        TCGA-67-3770        TCGA-67-3771 
"DEFB112 WILD-TYPE" "DEFB112 WILD-TYPE" "DEFB112 WILD-TYPE" "DEFB112 WILD-TYPE" 
       TCGA-67-3772        TCGA-67-3773        TCGA-67-3774        TCGA-67-6215 
"DEFB112 WILD-TYPE" "DEFB112 WILD-TYPE" "DEFB112 WILD-TYPE" "DEFB112 WILD-TYPE" 
       TCGA-67-6216        TCGA-67-6217        TCGA-71-6725        TCGA-73-4658 
"DEFB112 WILD-TYPE" "DEFB112 WILD-TYPE" "DEFB112 WILD-TYPE" "DEFB112 WILD-TYPE" 
       TCGA-73-4659        TCGA-73-4662        TCGA-73-4666        TCGA-73-4668 
"DEFB112 WILD-TYPE" "DEFB112 WILD-TYPE"   "DEFB112 MUTATED" "DEFB112 WILD-TYPE" 
       TCGA-73-4670        TCGA-73-4675        TCGA-73-4676        TCGA-73-4677 
"DEFB112 WILD-TYPE" "DEFB112 WILD-TYPE" "DEFB112 WILD-TYPE" "DEFB112 WILD-TYPE" 
       TCGA-91-6828        TCGA-91-6829        TCGA-91-6831        TCGA-91-6835 
"DEFB112 WILD-TYPE" "DEFB112 WILD-TYPE" "DEFB112 WILD-TYPE" "DEFB112 WILD-TYPE" 
       TCGA-91-6836 
"DEFB112 WILD-TYPE" 
[1] "hr=" "1"  
D142V2, continuous
D142V3, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  DEFB112 MUTATED      1    3
  DEFB112 WILD-TYPE   92   76
        clus
vv       DEFB112 MUTATED DEFB112 WILD-TYPE
  FEMALE               1                92
  MALE                 3                76
D142V4, continuous
[1] "Remove cluster labels:" "DEFB112 MUTATED"       
clus
  DEFB112 MUTATED DEFB112 WILD-TYPE 
                1                11 
       TCGA-35-4122        TCGA-35-4123        TCGA-35-5375        TCGA-64-1677 
"DEFB112 WILD-TYPE" "DEFB112 WILD-TYPE" "DEFB112 WILD-TYPE" "DEFB112 WILD-TYPE" 
       TCGA-64-5778        TCGA-71-6725        TCGA-73-4659        TCGA-73-4662 
"DEFB112 WILD-TYPE" "DEFB112 WILD-TYPE" "DEFB112 WILD-TYPE" "DEFB112 WILD-TYPE" 
       TCGA-73-4668        TCGA-73-4676        TCGA-75-5122 
"DEFB112 WILD-TYPE" "DEFB112 WILD-TYPE" "DEFB112 WILD-TYPE" 
D142V5, multiclass
D142V6, multiclass
    clus
vv   DEFB112 MUTATED DEFB112 WILD-TYPE
  T1               1                40
  T2               3               105
  T3               0                14
  T4               0                 8
D142V7, multiclass
       clus
vv      DEFB112 MUTATED DEFB112 WILD-TYPE
  N0                  3                92
  N1                  0                37
  N2+N3               1                34
D142V8, multiclass
    clus
vv   DEFB112 MUTATED DEFB112 WILD-TYPE
  M0               3               134
  M1               1                 8
  MX               0                22
D142V9, multiclass
     clus
vv    DEFB112 MUTATED DEFB112 WILD-TYPE
  I                 2                86
  II                0                33
  III               1                38
  IV                1                 8
D142V10, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  DEFB112 MUTATED      1    3
  DEFB112 WILD-TYPE   15  153
     clus
vv    DEFB112 MUTATED DEFB112 WILD-TYPE
  NO                1                15
  YES               3               153
D142V11, continuous
D142V12, continuous
D142V13, multiclass
                                             clus
vv                                            DEFB112 MUTATED DEFB112 WILD-TYPE
  CURRENT REFORMED SMOKER FOR < OR = 15 YEARS               4                58
  CURRENT REFORMED SMOKER FOR > 15 YEARS                    0                46
  CURRENT SMOKER                                            0                28
  LIFELONG NON-SMOKER                                       0                24
D142V14, continuous

Clustering(143) Variable = NLGN1 MUTATION ANALYSIS
D143V1, survival
                 sevent
clus2              0  1
  NLGN1 MUTATED    7  4
  NLGN1 WILD-TYPE 92 46
  NLGN1 MUTATED NLGN1 WILD-TYPE 
             11             138 
  NLGN1 MUTATED NLGN1 WILD-TYPE 
              4              46 
$`NLGN1 MUTATED`
TCGA-05-4382 TCGA-05-4390 TCGA-05-4397 TCGA-35-5375 TCGA-44-3918 TCGA-50-5931 
       19.92        37.02        24.03         8.68         6.44         8.78 
TCGA-55-1592 TCGA-55-1595 TCGA-64-1676 TCGA-67-3771 TCGA-73-4658 
       23.05        48.62        56.81         1.97        52.57 

$`NLGN1 WILD-TYPE`
TCGA-05-4249 TCGA-05-4250 TCGA-05-4384 TCGA-05-4396 TCGA-05-4398 TCGA-05-4402 
       38.07         3.98        14.01         9.96        47.05         8.02 
TCGA-05-4405 TCGA-05-4415 TCGA-05-4417 TCGA-05-4418 TCGA-05-4420 TCGA-05-4424 
       20.05         2.96        14.93         8.98        29.95        30.02 
TCGA-05-4426 TCGA-05-4427 TCGA-05-4430 TCGA-05-4432 TCGA-05-4433 TCGA-05-4434 
       26.01        26.01        25.02        25.02        24.00        15.02 
TCGA-05-5420 TCGA-05-5423 TCGA-05-5425 TCGA-05-5429 TCGA-05-5715 TCGA-35-3615 
        1.02         4.96         2.96         0.99         2.04         0.46 
TCGA-35-4122 TCGA-35-4123 TCGA-38-4625 TCGA-38-4626 TCGA-38-4627 TCGA-38-4628 
        7.36         5.95        47.61        85.32        37.71        49.02 
TCGA-38-4629 TCGA-38-4630 TCGA-38-4631 TCGA-38-4632 TCGA-38-6178 TCGA-44-2655 
       28.37        35.28        11.64        44.61         5.19        18.87 
TCGA-44-2656 TCGA-44-2657 TCGA-44-2659 TCGA-44-2661 TCGA-44-2662 TCGA-44-2665 
       19.10        13.15        17.39         3.39        15.78        13.15 
TCGA-44-2666 TCGA-44-2668 TCGA-44-3396 TCGA-44-3398 TCGA-44-3919 TCGA-44-4112 
        3.19         8.09        10.22         8.32         6.21         4.60 
TCGA-44-5643 TCGA-44-5645 TCGA-44-6144 TCGA-44-6145 TCGA-44-6146 TCGA-44-6147 
        3.48         6.84         0.30         3.35         9.93         7.76 
TCGA-44-6148 TCGA-44-6774 TCGA-44-6775 TCGA-44-6776 TCGA-44-6777 TCGA-44-6778 
        3.12         5.42         2.70        63.72        32.45        36.49 
TCGA-44-6779 TCGA-49-4486 TCGA-49-4487 TCGA-49-4488 TCGA-49-4490 TCGA-49-4494 
       16.41        76.21        28.11        28.57        12.66        35.54 
TCGA-49-4501 TCGA-49-4505 TCGA-49-4506 TCGA-49-4507 TCGA-49-4510 TCGA-49-4512 
       46.72        14.07        32.84         8.81        29.46        29.75 
TCGA-49-4514 TCGA-49-6742 TCGA-49-6743 TCGA-49-6744 TCGA-49-6745 TCGA-50-5044 
       43.20        15.02        12.13        12.99         4.93        20.48 
TCGA-50-5045 TCGA-50-5049 TCGA-50-5051 TCGA-50-5055 TCGA-50-5066 TCGA-50-5068 
       71.47        48.82        14.96        25.81         9.76        49.28 
TCGA-50-5072 TCGA-50-5930 TCGA-50-5932 TCGA-50-5933 TCGA-50-5935 TCGA-50-5936 
        8.05         9.27        35.87        77.88        21.47         8.45 
TCGA-50-5939 TCGA-50-5941 TCGA-50-5942 TCGA-50-5944 TCGA-50-5946 TCGA-50-6590 
       15.12         9.37         4.44        12.26        11.47        42.31 
TCGA-50-6591 TCGA-50-6592 TCGA-50-6593 TCGA-50-6594 TCGA-50-6595 TCGA-50-6597 
        3.88        25.51        11.05        12.16         6.21        33.37 
TCGA-55-1594 TCGA-55-1596 TCGA-55-5899 TCGA-55-6543 TCGA-55-6642 TCGA-55-6712 
       38.73        45.17         2.86         0.07        32.61         0.79 
TCGA-64-1677 TCGA-64-1678 TCGA-64-1680 TCGA-64-5774 TCGA-64-5775 TCGA-64-5778 
       20.65        39.09        37.02        83.84         0.10        30.44 
TCGA-64-5779 TCGA-64-5781 TCGA-64-5815 TCGA-67-3770 TCGA-67-3772 TCGA-67-3773 
       16.67        39.52         7.33         0.99         0.59         2.04 
TCGA-67-3774 TCGA-67-6215 TCGA-67-6216 TCGA-67-6217 TCGA-71-6725 TCGA-73-4659 
        0.59         0.89         0.69        13.87         2.01        23.38 
TCGA-73-4662 TCGA-73-4666 TCGA-73-4668 TCGA-73-4670 TCGA-73-4675 TCGA-73-4676 
       29.95        20.28        15.35         0.46         1.32         4.01 
TCGA-73-4677 TCGA-91-6828 TCGA-91-6829 TCGA-91-6831 TCGA-91-6835 TCGA-91-6836 
        1.25         1.22        41.33         1.28         1.15         0.36 

  NLGN1 MUTATED NLGN1 WILD-TYPE 
           1.97            0.07 
  NLGN1 MUTATED NLGN1 WILD-TYPE 
          56.81           85.32 
  NLGN1 MUTATED NLGN1 WILD-TYPE 
          23.05           13.15 
[1] "2.0 - 56.8 (23.1)" "0.1 - 85.3 (13.2)"
     TCGA-05-4249      TCGA-05-4250      TCGA-05-4382      TCGA-05-4384 
"NLGN1 WILD-TYPE" "NLGN1 WILD-TYPE"   "NLGN1 MUTATED" "NLGN1 WILD-TYPE" 
     TCGA-05-4390      TCGA-05-4396      TCGA-05-4397      TCGA-05-4398 
  "NLGN1 MUTATED" "NLGN1 WILD-TYPE"   "NLGN1 MUTATED" "NLGN1 WILD-TYPE" 
     TCGA-05-4402      TCGA-05-4405      TCGA-05-4415      TCGA-05-4417 
"NLGN1 WILD-TYPE" "NLGN1 WILD-TYPE" "NLGN1 WILD-TYPE" "NLGN1 WILD-TYPE" 
     TCGA-05-4418      TCGA-05-4420      TCGA-05-4424      TCGA-05-4426 
"NLGN1 WILD-TYPE" "NLGN1 WILD-TYPE" "NLGN1 WILD-TYPE" "NLGN1 WILD-TYPE" 
     TCGA-05-4427      TCGA-05-4430      TCGA-05-4432      TCGA-05-4433 
"NLGN1 WILD-TYPE" "NLGN1 WILD-TYPE" "NLGN1 WILD-TYPE" "NLGN1 WILD-TYPE" 
     TCGA-05-4434      TCGA-05-5420      TCGA-05-5423      TCGA-05-5425 
"NLGN1 WILD-TYPE" "NLGN1 WILD-TYPE" "NLGN1 WILD-TYPE" "NLGN1 WILD-TYPE" 
     TCGA-05-5429      TCGA-05-5715      TCGA-35-3615      TCGA-35-4122 
"NLGN1 WILD-TYPE" "NLGN1 WILD-TYPE" "NLGN1 WILD-TYPE" "NLGN1 WILD-TYPE" 
     TCGA-35-4123      TCGA-35-5375      TCGA-38-4625      TCGA-38-4626 
"NLGN1 WILD-TYPE"   "NLGN1 MUTATED" "NLGN1 WILD-TYPE" "NLGN1 WILD-TYPE" 
     TCGA-38-4627      TCGA-38-4628      TCGA-38-4629      TCGA-38-4630 
"NLGN1 WILD-TYPE" "NLGN1 WILD-TYPE" "NLGN1 WILD-TYPE" "NLGN1 WILD-TYPE" 
     TCGA-38-4631      TCGA-38-4632      TCGA-38-6178      TCGA-44-2655 
"NLGN1 WILD-TYPE" "NLGN1 WILD-TYPE" "NLGN1 WILD-TYPE" "NLGN1 WILD-TYPE" 
     TCGA-44-2656      TCGA-44-2657      TCGA-44-2659      TCGA-44-2661 
"NLGN1 WILD-TYPE" "NLGN1 WILD-TYPE" "NLGN1 WILD-TYPE" "NLGN1 WILD-TYPE" 
     TCGA-44-2662      TCGA-44-2665      TCGA-44-2666      TCGA-44-2668 
"NLGN1 WILD-TYPE" "NLGN1 WILD-TYPE" "NLGN1 WILD-TYPE" "NLGN1 WILD-TYPE" 
     TCGA-44-3396      TCGA-44-3398      TCGA-44-3918      TCGA-44-3919 
"NLGN1 WILD-TYPE" "NLGN1 WILD-TYPE"   "NLGN1 MUTATED" "NLGN1 WILD-TYPE" 
     TCGA-44-4112      TCGA-44-5643      TCGA-44-5645      TCGA-44-6144 
"NLGN1 WILD-TYPE" "NLGN1 WILD-TYPE" "NLGN1 WILD-TYPE" "NLGN1 WILD-TYPE" 
     TCGA-44-6145      TCGA-44-6146      TCGA-44-6147      TCGA-44-6148 
"NLGN1 WILD-TYPE" "NLGN1 WILD-TYPE" "NLGN1 WILD-TYPE" "NLGN1 WILD-TYPE" 
     TCGA-44-6774      TCGA-44-6775      TCGA-44-6776      TCGA-44-6777 
"NLGN1 WILD-TYPE" "NLGN1 WILD-TYPE" "NLGN1 WILD-TYPE" "NLGN1 WILD-TYPE" 
     TCGA-44-6778      TCGA-44-6779      TCGA-49-4486      TCGA-49-4487 
"NLGN1 WILD-TYPE" "NLGN1 WILD-TYPE" "NLGN1 WILD-TYPE" "NLGN1 WILD-TYPE" 
     TCGA-49-4488      TCGA-49-4490      TCGA-49-4494      TCGA-49-4501 
"NLGN1 WILD-TYPE" "NLGN1 WILD-TYPE" "NLGN1 WILD-TYPE" "NLGN1 WILD-TYPE" 
     TCGA-49-4505      TCGA-49-4506      TCGA-49-4507      TCGA-49-4510 
"NLGN1 WILD-TYPE" "NLGN1 WILD-TYPE" "NLGN1 WILD-TYPE" "NLGN1 WILD-TYPE" 
     TCGA-49-4512      TCGA-49-4514      TCGA-49-6742      TCGA-49-6743 
"NLGN1 WILD-TYPE" "NLGN1 WILD-TYPE" "NLGN1 WILD-TYPE" "NLGN1 WILD-TYPE" 
     TCGA-49-6744      TCGA-49-6745      TCGA-50-5044      TCGA-50-5045 
"NLGN1 WILD-TYPE" "NLGN1 WILD-TYPE" "NLGN1 WILD-TYPE" "NLGN1 WILD-TYPE" 
     TCGA-50-5049      TCGA-50-5051      TCGA-50-5055      TCGA-50-5066 
"NLGN1 WILD-TYPE" "NLGN1 WILD-TYPE" "NLGN1 WILD-TYPE" "NLGN1 WILD-TYPE" 
     TCGA-50-5068      TCGA-50-5072      TCGA-50-5930      TCGA-50-5931 
"NLGN1 WILD-TYPE" "NLGN1 WILD-TYPE" "NLGN1 WILD-TYPE"   "NLGN1 MUTATED" 
     TCGA-50-5932      TCGA-50-5933      TCGA-50-5935      TCGA-50-5936 
"NLGN1 WILD-TYPE" "NLGN1 WILD-TYPE" "NLGN1 WILD-TYPE" "NLGN1 WILD-TYPE" 
     TCGA-50-5939      TCGA-50-5941      TCGA-50-5942      TCGA-50-5944 
"NLGN1 WILD-TYPE" "NLGN1 WILD-TYPE" "NLGN1 WILD-TYPE" "NLGN1 WILD-TYPE" 
     TCGA-50-5946      TCGA-50-6590      TCGA-50-6591      TCGA-50-6592 
"NLGN1 WILD-TYPE" "NLGN1 WILD-TYPE" "NLGN1 WILD-TYPE" "NLGN1 WILD-TYPE" 
     TCGA-50-6593      TCGA-50-6594      TCGA-50-6595      TCGA-50-6597 
"NLGN1 WILD-TYPE" "NLGN1 WILD-TYPE" "NLGN1 WILD-TYPE" "NLGN1 WILD-TYPE" 
     TCGA-55-1592      TCGA-55-1594      TCGA-55-1595      TCGA-55-1596 
  "NLGN1 MUTATED" "NLGN1 WILD-TYPE"   "NLGN1 MUTATED" "NLGN1 WILD-TYPE" 
     TCGA-55-5899      TCGA-55-6543      TCGA-55-6642      TCGA-55-6712 
"NLGN1 WILD-TYPE" "NLGN1 WILD-TYPE" "NLGN1 WILD-TYPE" "NLGN1 WILD-TYPE" 
     TCGA-64-1676      TCGA-64-1677      TCGA-64-1678      TCGA-64-1680 
  "NLGN1 MUTATED" "NLGN1 WILD-TYPE" "NLGN1 WILD-TYPE" "NLGN1 WILD-TYPE" 
     TCGA-64-5774      TCGA-64-5775      TCGA-64-5778      TCGA-64-5779 
"NLGN1 WILD-TYPE" "NLGN1 WILD-TYPE" "NLGN1 WILD-TYPE" "NLGN1 WILD-TYPE" 
     TCGA-64-5781      TCGA-64-5815      TCGA-67-3770      TCGA-67-3771 
"NLGN1 WILD-TYPE" "NLGN1 WILD-TYPE" "NLGN1 WILD-TYPE"   "NLGN1 MUTATED" 
     TCGA-67-3772      TCGA-67-3773      TCGA-67-3774      TCGA-67-6215 
"NLGN1 WILD-TYPE" "NLGN1 WILD-TYPE" "NLGN1 WILD-TYPE" "NLGN1 WILD-TYPE" 
     TCGA-67-6216      TCGA-67-6217      TCGA-71-6725      TCGA-73-4658 
"NLGN1 WILD-TYPE" "NLGN1 WILD-TYPE" "NLGN1 WILD-TYPE"   "NLGN1 MUTATED" 
     TCGA-73-4659      TCGA-73-4662      TCGA-73-4666      TCGA-73-4668 
"NLGN1 WILD-TYPE" "NLGN1 WILD-TYPE" "NLGN1 WILD-TYPE" "NLGN1 WILD-TYPE" 
     TCGA-73-4670      TCGA-73-4675      TCGA-73-4676      TCGA-73-4677 
"NLGN1 WILD-TYPE" "NLGN1 WILD-TYPE" "NLGN1 WILD-TYPE" "NLGN1 WILD-TYPE" 
     TCGA-91-6828      TCGA-91-6829      TCGA-91-6831      TCGA-91-6835 
"NLGN1 WILD-TYPE" "NLGN1 WILD-TYPE" "NLGN1 WILD-TYPE" "NLGN1 WILD-TYPE" 
     TCGA-91-6836 
"NLGN1 WILD-TYPE" 
     TCGA-05-4249      TCGA-05-4250      TCGA-05-4382      TCGA-05-4384 
"NLGN1 WILD-TYPE" "NLGN1 WILD-TYPE"   "NLGN1 MUTATED" "NLGN1 WILD-TYPE" 
     TCGA-05-4390      TCGA-05-4396      TCGA-05-4397      TCGA-05-4398 
  "NLGN1 MUTATED" "NLGN1 WILD-TYPE"   "NLGN1 MUTATED" "NLGN1 WILD-TYPE" 
     TCGA-05-4402      TCGA-05-4405      TCGA-05-4415      TCGA-05-4417 
"NLGN1 WILD-TYPE" "NLGN1 WILD-TYPE" "NLGN1 WILD-TYPE" "NLGN1 WILD-TYPE" 
     TCGA-05-4418      TCGA-05-4420      TCGA-05-4424      TCGA-05-4426 
"NLGN1 WILD-TYPE" "NLGN1 WILD-TYPE" "NLGN1 WILD-TYPE" "NLGN1 WILD-TYPE" 
     TCGA-05-4427      TCGA-05-4430      TCGA-05-4432      TCGA-05-4433 
"NLGN1 WILD-TYPE" "NLGN1 WILD-TYPE" "NLGN1 WILD-TYPE" "NLGN1 WILD-TYPE" 
     TCGA-05-4434      TCGA-05-5420      TCGA-05-5423      TCGA-05-5425 
"NLGN1 WILD-TYPE" "NLGN1 WILD-TYPE" "NLGN1 WILD-TYPE" "NLGN1 WILD-TYPE" 
     TCGA-05-5429      TCGA-05-5715      TCGA-35-3615      TCGA-35-4122 
"NLGN1 WILD-TYPE" "NLGN1 WILD-TYPE" "NLGN1 WILD-TYPE" "NLGN1 WILD-TYPE" 
     TCGA-35-4123      TCGA-35-5375      TCGA-38-4625      TCGA-38-4626 
"NLGN1 WILD-TYPE"   "NLGN1 MUTATED" "NLGN1 WILD-TYPE" "NLGN1 WILD-TYPE" 
     TCGA-38-4627      TCGA-38-4628      TCGA-38-4629      TCGA-38-4630 
"NLGN1 WILD-TYPE" "NLGN1 WILD-TYPE" "NLGN1 WILD-TYPE" "NLGN1 WILD-TYPE" 
     TCGA-38-4631      TCGA-38-4632      TCGA-38-6178      TCGA-44-2655 
"NLGN1 WILD-TYPE" "NLGN1 WILD-TYPE" "NLGN1 WILD-TYPE" "NLGN1 WILD-TYPE" 
     TCGA-44-2656      TCGA-44-2657      TCGA-44-2659      TCGA-44-2661 
"NLGN1 WILD-TYPE" "NLGN1 WILD-TYPE" "NLGN1 WILD-TYPE" "NLGN1 WILD-TYPE" 
     TCGA-44-2662      TCGA-44-2665      TCGA-44-2666      TCGA-44-2668 
"NLGN1 WILD-TYPE" "NLGN1 WILD-TYPE" "NLGN1 WILD-TYPE" "NLGN1 WILD-TYPE" 
     TCGA-44-3396      TCGA-44-3398      TCGA-44-3918      TCGA-44-3919 
"NLGN1 WILD-TYPE" "NLGN1 WILD-TYPE"   "NLGN1 MUTATED" "NLGN1 WILD-TYPE" 
     TCGA-44-4112      TCGA-44-5643      TCGA-44-5645      TCGA-44-6144 
"NLGN1 WILD-TYPE" "NLGN1 WILD-TYPE" "NLGN1 WILD-TYPE" "NLGN1 WILD-TYPE" 
     TCGA-44-6145      TCGA-44-6146      TCGA-44-6147      TCGA-44-6148 
"NLGN1 WILD-TYPE" "NLGN1 WILD-TYPE" "NLGN1 WILD-TYPE" "NLGN1 WILD-TYPE" 
     TCGA-44-6774      TCGA-44-6775      TCGA-44-6776      TCGA-44-6777 
"NLGN1 WILD-TYPE" "NLGN1 WILD-TYPE" "NLGN1 WILD-TYPE" "NLGN1 WILD-TYPE" 
     TCGA-44-6778      TCGA-44-6779      TCGA-49-4486      TCGA-49-4487 
"NLGN1 WILD-TYPE" "NLGN1 WILD-TYPE" "NLGN1 WILD-TYPE" "NLGN1 WILD-TYPE" 
     TCGA-49-4488      TCGA-49-4490      TCGA-49-4494      TCGA-49-4501 
"NLGN1 WILD-TYPE" "NLGN1 WILD-TYPE" "NLGN1 WILD-TYPE" "NLGN1 WILD-TYPE" 
     TCGA-49-4505      TCGA-49-4506      TCGA-49-4507      TCGA-49-4510 
"NLGN1 WILD-TYPE" "NLGN1 WILD-TYPE" "NLGN1 WILD-TYPE" "NLGN1 WILD-TYPE" 
     TCGA-49-4512      TCGA-49-4514      TCGA-49-6742      TCGA-49-6743 
"NLGN1 WILD-TYPE" "NLGN1 WILD-TYPE" "NLGN1 WILD-TYPE" "NLGN1 WILD-TYPE" 
     TCGA-49-6744      TCGA-49-6745      TCGA-50-5044      TCGA-50-5045 
"NLGN1 WILD-TYPE" "NLGN1 WILD-TYPE" "NLGN1 WILD-TYPE" "NLGN1 WILD-TYPE" 
     TCGA-50-5049      TCGA-50-5051      TCGA-50-5055      TCGA-50-5066 
"NLGN1 WILD-TYPE" "NLGN1 WILD-TYPE" "NLGN1 WILD-TYPE" "NLGN1 WILD-TYPE" 
     TCGA-50-5068      TCGA-50-5072      TCGA-50-5930      TCGA-50-5931 
"NLGN1 WILD-TYPE" "NLGN1 WILD-TYPE" "NLGN1 WILD-TYPE"   "NLGN1 MUTATED" 
     TCGA-50-5932      TCGA-50-5933      TCGA-50-5935      TCGA-50-5936 
"NLGN1 WILD-TYPE" "NLGN1 WILD-TYPE" "NLGN1 WILD-TYPE" "NLGN1 WILD-TYPE" 
     TCGA-50-5939      TCGA-50-5941      TCGA-50-5942      TCGA-50-5944 
"NLGN1 WILD-TYPE" "NLGN1 WILD-TYPE" "NLGN1 WILD-TYPE" "NLGN1 WILD-TYPE" 
     TCGA-50-5946      TCGA-50-6590      TCGA-50-6591      TCGA-50-6592 
"NLGN1 WILD-TYPE" "NLGN1 WILD-TYPE" "NLGN1 WILD-TYPE" "NLGN1 WILD-TYPE" 
     TCGA-50-6593      TCGA-50-6594      TCGA-50-6595      TCGA-50-6597 
"NLGN1 WILD-TYPE" "NLGN1 WILD-TYPE" "NLGN1 WILD-TYPE" "NLGN1 WILD-TYPE" 
     TCGA-55-1592      TCGA-55-1594      TCGA-55-1595      TCGA-55-1596 
  "NLGN1 MUTATED" "NLGN1 WILD-TYPE"   "NLGN1 MUTATED" "NLGN1 WILD-TYPE" 
     TCGA-55-5899      TCGA-55-6543      TCGA-55-6642      TCGA-55-6712 
"NLGN1 WILD-TYPE" "NLGN1 WILD-TYPE" "NLGN1 WILD-TYPE" "NLGN1 WILD-TYPE" 
     TCGA-64-1676      TCGA-64-1677      TCGA-64-1678      TCGA-64-1680 
  "NLGN1 MUTATED" "NLGN1 WILD-TYPE" "NLGN1 WILD-TYPE" "NLGN1 WILD-TYPE" 
     TCGA-64-5774      TCGA-64-5775      TCGA-64-5778      TCGA-64-5779 
"NLGN1 WILD-TYPE" "NLGN1 WILD-TYPE" "NLGN1 WILD-TYPE" "NLGN1 WILD-TYPE" 
     TCGA-64-5781      TCGA-64-5815      TCGA-67-3770      TCGA-67-3771 
"NLGN1 WILD-TYPE" "NLGN1 WILD-TYPE" "NLGN1 WILD-TYPE"   "NLGN1 MUTATED" 
     TCGA-67-3772      TCGA-67-3773      TCGA-67-3774      TCGA-67-6215 
"NLGN1 WILD-TYPE" "NLGN1 WILD-TYPE" "NLGN1 WILD-TYPE" "NLGN1 WILD-TYPE" 
     TCGA-67-6216      TCGA-67-6217      TCGA-71-6725      TCGA-73-4658 
"NLGN1 WILD-TYPE" "NLGN1 WILD-TYPE" "NLGN1 WILD-TYPE"   "NLGN1 MUTATED" 
     TCGA-73-4659      TCGA-73-4662      TCGA-73-4666      TCGA-73-4668 
"NLGN1 WILD-TYPE" "NLGN1 WILD-TYPE" "NLGN1 WILD-TYPE" "NLGN1 WILD-TYPE" 
     TCGA-73-4670      TCGA-73-4675      TCGA-73-4676      TCGA-73-4677 
"NLGN1 WILD-TYPE" "NLGN1 WILD-TYPE" "NLGN1 WILD-TYPE" "NLGN1 WILD-TYPE" 
     TCGA-91-6828      TCGA-91-6829      TCGA-91-6831      TCGA-91-6835 
"NLGN1 WILD-TYPE" "NLGN1 WILD-TYPE" "NLGN1 WILD-TYPE" "NLGN1 WILD-TYPE" 
     TCGA-91-6836 
"NLGN1 WILD-TYPE" 
     TCGA-05-4249      TCGA-05-4250      TCGA-05-4382      TCGA-05-4384 
"NLGN1 WILD-TYPE" "NLGN1 WILD-TYPE"   "NLGN1 MUTATED" "NLGN1 WILD-TYPE" 
     TCGA-05-4390      TCGA-05-4396      TCGA-05-4397      TCGA-05-4398 
  "NLGN1 MUTATED" "NLGN1 WILD-TYPE"   "NLGN1 MUTATED" "NLGN1 WILD-TYPE" 
     TCGA-05-4402      TCGA-05-4405      TCGA-05-4415      TCGA-05-4417 
"NLGN1 WILD-TYPE" "NLGN1 WILD-TYPE" "NLGN1 WILD-TYPE" "NLGN1 WILD-TYPE" 
     TCGA-05-4418      TCGA-05-4420      TCGA-05-4424      TCGA-05-4426 
"NLGN1 WILD-TYPE" "NLGN1 WILD-TYPE" "NLGN1 WILD-TYPE" "NLGN1 WILD-TYPE" 
     TCGA-05-4427      TCGA-05-4430      TCGA-05-4432      TCGA-05-4433 
"NLGN1 WILD-TYPE" "NLGN1 WILD-TYPE" "NLGN1 WILD-TYPE" "NLGN1 WILD-TYPE" 
     TCGA-05-4434      TCGA-05-5420      TCGA-05-5423      TCGA-05-5425 
"NLGN1 WILD-TYPE" "NLGN1 WILD-TYPE" "NLGN1 WILD-TYPE" "NLGN1 WILD-TYPE" 
     TCGA-05-5429      TCGA-05-5715      TCGA-35-3615      TCGA-35-4122 
"NLGN1 WILD-TYPE" "NLGN1 WILD-TYPE" "NLGN1 WILD-TYPE" "NLGN1 WILD-TYPE" 
     TCGA-35-4123      TCGA-35-5375      TCGA-38-4625      TCGA-38-4626 
"NLGN1 WILD-TYPE"   "NLGN1 MUTATED" "NLGN1 WILD-TYPE" "NLGN1 WILD-TYPE" 
     TCGA-38-4627      TCGA-38-4628      TCGA-38-4629      TCGA-38-4630 
"NLGN1 WILD-TYPE" "NLGN1 WILD-TYPE" "NLGN1 WILD-TYPE" "NLGN1 WILD-TYPE" 
     TCGA-38-4631      TCGA-38-4632      TCGA-38-6178      TCGA-44-2655 
"NLGN1 WILD-TYPE" "NLGN1 WILD-TYPE" "NLGN1 WILD-TYPE" "NLGN1 WILD-TYPE" 
     TCGA-44-2656      TCGA-44-2657      TCGA-44-2659      TCGA-44-2661 
"NLGN1 WILD-TYPE" "NLGN1 WILD-TYPE" "NLGN1 WILD-TYPE" "NLGN1 WILD-TYPE" 
     TCGA-44-2662      TCGA-44-2665      TCGA-44-2666      TCGA-44-2668 
"NLGN1 WILD-TYPE" "NLGN1 WILD-TYPE" "NLGN1 WILD-TYPE" "NLGN1 WILD-TYPE" 
     TCGA-44-3396      TCGA-44-3398      TCGA-44-3918      TCGA-44-3919 
"NLGN1 WILD-TYPE" "NLGN1 WILD-TYPE"   "NLGN1 MUTATED" "NLGN1 WILD-TYPE" 
     TCGA-44-4112      TCGA-44-5643      TCGA-44-5645      TCGA-44-6144 
"NLGN1 WILD-TYPE" "NLGN1 WILD-TYPE" "NLGN1 WILD-TYPE" "NLGN1 WILD-TYPE" 
     TCGA-44-6145      TCGA-44-6146      TCGA-44-6147      TCGA-44-6148 
"NLGN1 WILD-TYPE" "NLGN1 WILD-TYPE" "NLGN1 WILD-TYPE" "NLGN1 WILD-TYPE" 
     TCGA-44-6774      TCGA-44-6775      TCGA-44-6776      TCGA-44-6777 
"NLGN1 WILD-TYPE" "NLGN1 WILD-TYPE" "NLGN1 WILD-TYPE" "NLGN1 WILD-TYPE" 
     TCGA-44-6778      TCGA-44-6779      TCGA-49-4486      TCGA-49-4487 
"NLGN1 WILD-TYPE" "NLGN1 WILD-TYPE" "NLGN1 WILD-TYPE" "NLGN1 WILD-TYPE" 
     TCGA-49-4488      TCGA-49-4490      TCGA-49-4494      TCGA-49-4501 
"NLGN1 WILD-TYPE" "NLGN1 WILD-TYPE" "NLGN1 WILD-TYPE" "NLGN1 WILD-TYPE" 
     TCGA-49-4505      TCGA-49-4506      TCGA-49-4507      TCGA-49-4510 
"NLGN1 WILD-TYPE" "NLGN1 WILD-TYPE" "NLGN1 WILD-TYPE" "NLGN1 WILD-TYPE" 
     TCGA-49-4512      TCGA-49-4514      TCGA-49-6742      TCGA-49-6743 
"NLGN1 WILD-TYPE" "NLGN1 WILD-TYPE" "NLGN1 WILD-TYPE" "NLGN1 WILD-TYPE" 
     TCGA-49-6744      TCGA-49-6745      TCGA-50-5044      TCGA-50-5045 
"NLGN1 WILD-TYPE" "NLGN1 WILD-TYPE" "NLGN1 WILD-TYPE" "NLGN1 WILD-TYPE" 
     TCGA-50-5049      TCGA-50-5051      TCGA-50-5055      TCGA-50-5066 
"NLGN1 WILD-TYPE" "NLGN1 WILD-TYPE" "NLGN1 WILD-TYPE" "NLGN1 WILD-TYPE" 
     TCGA-50-5068      TCGA-50-5072      TCGA-50-5930      TCGA-50-5931 
"NLGN1 WILD-TYPE" "NLGN1 WILD-TYPE" "NLGN1 WILD-TYPE"   "NLGN1 MUTATED" 
     TCGA-50-5932      TCGA-50-5933      TCGA-50-5935      TCGA-50-5936 
"NLGN1 WILD-TYPE" "NLGN1 WILD-TYPE" "NLGN1 WILD-TYPE" "NLGN1 WILD-TYPE" 
     TCGA-50-5939      TCGA-50-5941      TCGA-50-5942      TCGA-50-5944 
"NLGN1 WILD-TYPE" "NLGN1 WILD-TYPE" "NLGN1 WILD-TYPE" "NLGN1 WILD-TYPE" 
     TCGA-50-5946      TCGA-50-6590      TCGA-50-6591      TCGA-50-6592 
"NLGN1 WILD-TYPE" "NLGN1 WILD-TYPE" "NLGN1 WILD-TYPE" "NLGN1 WILD-TYPE" 
     TCGA-50-6593      TCGA-50-6594      TCGA-50-6595      TCGA-50-6597 
"NLGN1 WILD-TYPE" "NLGN1 WILD-TYPE" "NLGN1 WILD-TYPE" "NLGN1 WILD-TYPE" 
     TCGA-55-1592      TCGA-55-1594      TCGA-55-1595      TCGA-55-1596 
  "NLGN1 MUTATED" "NLGN1 WILD-TYPE"   "NLGN1 MUTATED" "NLGN1 WILD-TYPE" 
     TCGA-55-5899      TCGA-55-6543      TCGA-55-6642      TCGA-55-6712 
"NLGN1 WILD-TYPE" "NLGN1 WILD-TYPE" "NLGN1 WILD-TYPE" "NLGN1 WILD-TYPE" 
     TCGA-64-1676      TCGA-64-1677      TCGA-64-1678      TCGA-64-1680 
  "NLGN1 MUTATED" "NLGN1 WILD-TYPE" "NLGN1 WILD-TYPE" "NLGN1 WILD-TYPE" 
     TCGA-64-5774      TCGA-64-5775      TCGA-64-5778      TCGA-64-5779 
"NLGN1 WILD-TYPE" "NLGN1 WILD-TYPE" "NLGN1 WILD-TYPE" "NLGN1 WILD-TYPE" 
     TCGA-64-5781      TCGA-64-5815      TCGA-67-3770      TCGA-67-3771 
"NLGN1 WILD-TYPE" "NLGN1 WILD-TYPE" "NLGN1 WILD-TYPE"   "NLGN1 MUTATED" 
     TCGA-67-3772      TCGA-67-3773      TCGA-67-3774      TCGA-67-6215 
"NLGN1 WILD-TYPE" "NLGN1 WILD-TYPE" "NLGN1 WILD-TYPE" "NLGN1 WILD-TYPE" 
     TCGA-67-6216      TCGA-67-6217      TCGA-71-6725      TCGA-73-4658 
"NLGN1 WILD-TYPE" "NLGN1 WILD-TYPE" "NLGN1 WILD-TYPE"   "NLGN1 MUTATED" 
     TCGA-73-4659      TCGA-73-4662      TCGA-73-4666      TCGA-73-4668 
"NLGN1 WILD-TYPE" "NLGN1 WILD-TYPE" "NLGN1 WILD-TYPE" "NLGN1 WILD-TYPE" 
     TCGA-73-4670      TCGA-73-4675      TCGA-73-4676      TCGA-73-4677 
"NLGN1 WILD-TYPE" "NLGN1 WILD-TYPE" "NLGN1 WILD-TYPE" "NLGN1 WILD-TYPE" 
     TCGA-91-6828      TCGA-91-6829      TCGA-91-6831      TCGA-91-6835 
"NLGN1 WILD-TYPE" "NLGN1 WILD-TYPE" "NLGN1 WILD-TYPE" "NLGN1 WILD-TYPE" 
     TCGA-91-6836 
"NLGN1 WILD-TYPE" 
[1] "hr=" "1.3"
D143V2, continuous
D143V3, binary
[1] "tbl2"
                 cls
clus              [,1] [,2]
  NLGN1 MUTATED      7    8
  NLGN1 WILD-TYPE   86   71
        clus
vv       NLGN1 MUTATED NLGN1 WILD-TYPE
  FEMALE             7              86
  MALE               8              71
D143V4, continuous
[1] "Remove cluster labels:" "NLGN1 MUTATED"         
clus
  NLGN1 MUTATED NLGN1 WILD-TYPE 
              2              10 
     TCGA-35-4122      TCGA-35-4123      TCGA-64-1677      TCGA-64-5778 
"NLGN1 WILD-TYPE" "NLGN1 WILD-TYPE" "NLGN1 WILD-TYPE" "NLGN1 WILD-TYPE" 
     TCGA-71-6725      TCGA-73-4659      TCGA-73-4662      TCGA-73-4666 
"NLGN1 WILD-TYPE" "NLGN1 WILD-TYPE" "NLGN1 WILD-TYPE" "NLGN1 WILD-TYPE" 
     TCGA-73-4668      TCGA-73-4676 
"NLGN1 WILD-TYPE" "NLGN1 WILD-TYPE" 
D143V5, multiclass
D143V6, multiclass
    clus
vv   NLGN1 MUTATED NLGN1 WILD-TYPE
  T1             4              37
  T2            10              98
  T3             1              13
  T4             0               8
D143V7, multiclass
       clus
vv      NLGN1 MUTATED NLGN1 WILD-TYPE
  N0               12              83
  N1                1              36
  N2+N3             2              33
D143V8, multiclass
    clus
vv   NLGN1 MUTATED NLGN1 WILD-TYPE
  M0            15             122
  M1             0               9
  MX             0              22
D143V9, multiclass
     clus
vv    NLGN1 MUTATED NLGN1 WILD-TYPE
  I              12              76
  II              1              32
  III             2              37
  IV              0               9
D143V10, binary
[1] "tbl2"
                 cls
clus              [,1] [,2]
  NLGN1 MUTATED      0   15
  NLGN1 WILD-TYPE   16  141
     clus
vv    NLGN1 MUTATED NLGN1 WILD-TYPE
  NO              0              16
  YES            15             141
D143V11, continuous
D143V12, continuous
D143V13, multiclass
                                             clus
vv                                            NLGN1 MUTATED NLGN1 WILD-TYPE
  CURRENT REFORMED SMOKER FOR < OR = 15 YEARS             8              54
  CURRENT REFORMED SMOKER FOR > 15 YEARS                  4              42
  CURRENT SMOKER                                          2              26
  LIFELONG NON-SMOKER                                     0              24
D143V14, continuous

Clustering(144) Variable = TAS2R1 MUTATION ANALYSIS
D144V1, survival
                  sevent
clus2               0  1
  TAS2R1 MUTATED    5  1
  TAS2R1 WILD-TYPE 94 49
  TAS2R1 MUTATED TAS2R1 WILD-TYPE 
               6              143 
  TAS2R1 MUTATED TAS2R1 WILD-TYPE 
               1               49 
$`TAS2R1 MUTATED`
TCGA-05-5420 TCGA-05-5423 TCGA-50-6594 TCGA-55-5899 TCGA-64-5778 TCGA-64-5781 
        1.02         4.96        12.16         2.86        30.44        39.52 

$`TAS2R1 WILD-TYPE`
TCGA-05-4249 TCGA-05-4250 TCGA-05-4382 TCGA-05-4384 TCGA-05-4390 TCGA-05-4396 
       38.07         3.98        19.92        14.01        37.02         9.96 
TCGA-05-4397 TCGA-05-4398 TCGA-05-4402 TCGA-05-4405 TCGA-05-4415 TCGA-05-4417 
       24.03        47.05         8.02        20.05         2.96        14.93 
TCGA-05-4418 TCGA-05-4420 TCGA-05-4424 TCGA-05-4426 TCGA-05-4427 TCGA-05-4430 
        8.98        29.95        30.02        26.01        26.01        25.02 
TCGA-05-4432 TCGA-05-4433 TCGA-05-4434 TCGA-05-5425 TCGA-05-5429 TCGA-05-5715 
       25.02        24.00        15.02         2.96         0.99         2.04 
TCGA-35-3615 TCGA-35-4122 TCGA-35-4123 TCGA-35-5375 TCGA-38-4625 TCGA-38-4626 
        0.46         7.36         5.95         8.68        47.61        85.32 
TCGA-38-4627 TCGA-38-4628 TCGA-38-4629 TCGA-38-4630 TCGA-38-4631 TCGA-38-4632 
       37.71        49.02        28.37        35.28        11.64        44.61 
TCGA-38-6178 TCGA-44-2655 TCGA-44-2656 TCGA-44-2657 TCGA-44-2659 TCGA-44-2661 
        5.19        18.87        19.10        13.15        17.39         3.39 
TCGA-44-2662 TCGA-44-2665 TCGA-44-2666 TCGA-44-2668 TCGA-44-3396 TCGA-44-3398 
       15.78        13.15         3.19         8.09        10.22         8.32 
TCGA-44-3918 TCGA-44-3919 TCGA-44-4112 TCGA-44-5643 TCGA-44-5645 TCGA-44-6144 
        6.44         6.21         4.60         3.48         6.84         0.30 
TCGA-44-6145 TCGA-44-6146 TCGA-44-6147 TCGA-44-6148 TCGA-44-6774 TCGA-44-6775 
        3.35         9.93         7.76         3.12         5.42         2.70 
TCGA-44-6776 TCGA-44-6777 TCGA-44-6778 TCGA-44-6779 TCGA-49-4486 TCGA-49-4487 
       63.72        32.45        36.49        16.41        76.21        28.11 
TCGA-49-4488 TCGA-49-4490 TCGA-49-4494 TCGA-49-4501 TCGA-49-4505 TCGA-49-4506 
       28.57        12.66        35.54        46.72        14.07        32.84 
TCGA-49-4507 TCGA-49-4510 TCGA-49-4512 TCGA-49-4514 TCGA-49-6742 TCGA-49-6743 
        8.81        29.46        29.75        43.20        15.02        12.13 
TCGA-49-6744 TCGA-49-6745 TCGA-50-5044 TCGA-50-5045 TCGA-50-5049 TCGA-50-5051 
       12.99         4.93        20.48        71.47        48.82        14.96 
TCGA-50-5055 TCGA-50-5066 TCGA-50-5068 TCGA-50-5072 TCGA-50-5930 TCGA-50-5931 
       25.81         9.76        49.28         8.05         9.27         8.78 
TCGA-50-5932 TCGA-50-5933 TCGA-50-5935 TCGA-50-5936 TCGA-50-5939 TCGA-50-5941 
       35.87        77.88        21.47         8.45        15.12         9.37 
TCGA-50-5942 TCGA-50-5944 TCGA-50-5946 TCGA-50-6590 TCGA-50-6591 TCGA-50-6592 
        4.44        12.26        11.47        42.31         3.88        25.51 
TCGA-50-6593 TCGA-50-6595 TCGA-50-6597 TCGA-55-1592 TCGA-55-1594 TCGA-55-1595 
       11.05         6.21        33.37        23.05        38.73        48.62 
TCGA-55-1596 TCGA-55-6543 TCGA-55-6642 TCGA-55-6712 TCGA-64-1676 TCGA-64-1677 
       45.17         0.07        32.61         0.79        56.81        20.65 
TCGA-64-1678 TCGA-64-1680 TCGA-64-5774 TCGA-64-5775 TCGA-64-5779 TCGA-64-5815 
       39.09        37.02        83.84         0.10        16.67         7.33 
TCGA-67-3770 TCGA-67-3771 TCGA-67-3772 TCGA-67-3773 TCGA-67-3774 TCGA-67-6215 
        0.99         1.97         0.59         2.04         0.59         0.89 
TCGA-67-6216 TCGA-67-6217 TCGA-71-6725 TCGA-73-4658 TCGA-73-4659 TCGA-73-4662 
        0.69        13.87         2.01        52.57        23.38        29.95 
TCGA-73-4666 TCGA-73-4668 TCGA-73-4670 TCGA-73-4675 TCGA-73-4676 TCGA-73-4677 
       20.28        15.35         0.46         1.32         4.01         1.25 
TCGA-91-6828 TCGA-91-6829 TCGA-91-6831 TCGA-91-6835 TCGA-91-6836 
        1.22        41.33         1.28         1.15         0.36 

  TAS2R1 MUTATED TAS2R1 WILD-TYPE 
            1.02             0.07 
  TAS2R1 MUTATED TAS2R1 WILD-TYPE 
           39.52            85.32 
  TAS2R1 MUTATED TAS2R1 WILD-TYPE 
            8.56            14.01 
[1] "1.0 - 39.5 (8.6)"  "0.1 - 85.3 (14.0)"
      TCGA-05-4249       TCGA-05-4250       TCGA-05-4382       TCGA-05-4384 
"TAS2R1 WILD-TYPE" "TAS2R1 WILD-TYPE" "TAS2R1 WILD-TYPE" "TAS2R1 WILD-TYPE" 
      TCGA-05-4390       TCGA-05-4396       TCGA-05-4397       TCGA-05-4398 
"TAS2R1 WILD-TYPE" "TAS2R1 WILD-TYPE" "TAS2R1 WILD-TYPE" "TAS2R1 WILD-TYPE" 
      TCGA-05-4402       TCGA-05-4405       TCGA-05-4415       TCGA-05-4417 
"TAS2R1 WILD-TYPE" "TAS2R1 WILD-TYPE" "TAS2R1 WILD-TYPE" "TAS2R1 WILD-TYPE" 
      TCGA-05-4418       TCGA-05-4420       TCGA-05-4424       TCGA-05-4426 
"TAS2R1 WILD-TYPE" "TAS2R1 WILD-TYPE" "TAS2R1 WILD-TYPE" "TAS2R1 WILD-TYPE" 
      TCGA-05-4427       TCGA-05-4430       TCGA-05-4432       TCGA-05-4433 
"TAS2R1 WILD-TYPE" "TAS2R1 WILD-TYPE" "TAS2R1 WILD-TYPE" "TAS2R1 WILD-TYPE" 
      TCGA-05-4434       TCGA-05-5420       TCGA-05-5423       TCGA-05-5425 
"TAS2R1 WILD-TYPE"   "TAS2R1 MUTATED"   "TAS2R1 MUTATED" "TAS2R1 WILD-TYPE" 
      TCGA-05-5429       TCGA-05-5715       TCGA-35-3615       TCGA-35-4122 
"TAS2R1 WILD-TYPE" "TAS2R1 WILD-TYPE" "TAS2R1 WILD-TYPE" "TAS2R1 WILD-TYPE" 
      TCGA-35-4123       TCGA-35-5375       TCGA-38-4625       TCGA-38-4626 
"TAS2R1 WILD-TYPE" "TAS2R1 WILD-TYPE" "TAS2R1 WILD-TYPE" "TAS2R1 WILD-TYPE" 
      TCGA-38-4627       TCGA-38-4628       TCGA-38-4629       TCGA-38-4630 
"TAS2R1 WILD-TYPE" "TAS2R1 WILD-TYPE" "TAS2R1 WILD-TYPE" "TAS2R1 WILD-TYPE" 
      TCGA-38-4631       TCGA-38-4632       TCGA-38-6178       TCGA-44-2655 
"TAS2R1 WILD-TYPE" "TAS2R1 WILD-TYPE" "TAS2R1 WILD-TYPE" "TAS2R1 WILD-TYPE" 
      TCGA-44-2656       TCGA-44-2657       TCGA-44-2659       TCGA-44-2661 
"TAS2R1 WILD-TYPE" "TAS2R1 WILD-TYPE" "TAS2R1 WILD-TYPE" "TAS2R1 WILD-TYPE" 
      TCGA-44-2662       TCGA-44-2665       TCGA-44-2666       TCGA-44-2668 
"TAS2R1 WILD-TYPE" "TAS2R1 WILD-TYPE" "TAS2R1 WILD-TYPE" "TAS2R1 WILD-TYPE" 
      TCGA-44-3396       TCGA-44-3398       TCGA-44-3918       TCGA-44-3919 
"TAS2R1 WILD-TYPE" "TAS2R1 WILD-TYPE" "TAS2R1 WILD-TYPE" "TAS2R1 WILD-TYPE" 
      TCGA-44-4112       TCGA-44-5643       TCGA-44-5645       TCGA-44-6144 
"TAS2R1 WILD-TYPE" "TAS2R1 WILD-TYPE" "TAS2R1 WILD-TYPE" "TAS2R1 WILD-TYPE" 
      TCGA-44-6145       TCGA-44-6146       TCGA-44-6147       TCGA-44-6148 
"TAS2R1 WILD-TYPE" "TAS2R1 WILD-TYPE" "TAS2R1 WILD-TYPE" "TAS2R1 WILD-TYPE" 
      TCGA-44-6774       TCGA-44-6775       TCGA-44-6776       TCGA-44-6777 
"TAS2R1 WILD-TYPE" "TAS2R1 WILD-TYPE" "TAS2R1 WILD-TYPE" "TAS2R1 WILD-TYPE" 
      TCGA-44-6778       TCGA-44-6779       TCGA-49-4486       TCGA-49-4487 
"TAS2R1 WILD-TYPE" "TAS2R1 WILD-TYPE" "TAS2R1 WILD-TYPE" "TAS2R1 WILD-TYPE" 
      TCGA-49-4488       TCGA-49-4490       TCGA-49-4494       TCGA-49-4501 
"TAS2R1 WILD-TYPE" "TAS2R1 WILD-TYPE" "TAS2R1 WILD-TYPE" "TAS2R1 WILD-TYPE" 
      TCGA-49-4505       TCGA-49-4506       TCGA-49-4507       TCGA-49-4510 
"TAS2R1 WILD-TYPE" "TAS2R1 WILD-TYPE" "TAS2R1 WILD-TYPE" "TAS2R1 WILD-TYPE" 
      TCGA-49-4512       TCGA-49-4514       TCGA-49-6742       TCGA-49-6743 
"TAS2R1 WILD-TYPE" "TAS2R1 WILD-TYPE" "TAS2R1 WILD-TYPE" "TAS2R1 WILD-TYPE" 
      TCGA-49-6744       TCGA-49-6745       TCGA-50-5044       TCGA-50-5045 
"TAS2R1 WILD-TYPE" "TAS2R1 WILD-TYPE" "TAS2R1 WILD-TYPE" "TAS2R1 WILD-TYPE" 
      TCGA-50-5049       TCGA-50-5051       TCGA-50-5055       TCGA-50-5066 
"TAS2R1 WILD-TYPE" "TAS2R1 WILD-TYPE" "TAS2R1 WILD-TYPE" "TAS2R1 WILD-TYPE" 
      TCGA-50-5068       TCGA-50-5072       TCGA-50-5930       TCGA-50-5931 
"TAS2R1 WILD-TYPE" "TAS2R1 WILD-TYPE" "TAS2R1 WILD-TYPE" "TAS2R1 WILD-TYPE" 
      TCGA-50-5932       TCGA-50-5933       TCGA-50-5935       TCGA-50-5936 
"TAS2R1 WILD-TYPE" "TAS2R1 WILD-TYPE" "TAS2R1 WILD-TYPE" "TAS2R1 WILD-TYPE" 
      TCGA-50-5939       TCGA-50-5941       TCGA-50-5942       TCGA-50-5944 
"TAS2R1 WILD-TYPE" "TAS2R1 WILD-TYPE" "TAS2R1 WILD-TYPE" "TAS2R1 WILD-TYPE" 
      TCGA-50-5946       TCGA-50-6590       TCGA-50-6591       TCGA-50-6592 
"TAS2R1 WILD-TYPE" "TAS2R1 WILD-TYPE" "TAS2R1 WILD-TYPE" "TAS2R1 WILD-TYPE" 
      TCGA-50-6593       TCGA-50-6594       TCGA-50-6595       TCGA-50-6597 
"TAS2R1 WILD-TYPE"   "TAS2R1 MUTATED" "TAS2R1 WILD-TYPE" "TAS2R1 WILD-TYPE" 
      TCGA-55-1592       TCGA-55-1594       TCGA-55-1595       TCGA-55-1596 
"TAS2R1 WILD-TYPE" "TAS2R1 WILD-TYPE" "TAS2R1 WILD-TYPE" "TAS2R1 WILD-TYPE" 
      TCGA-55-5899       TCGA-55-6543       TCGA-55-6642       TCGA-55-6712 
  "TAS2R1 MUTATED" "TAS2R1 WILD-TYPE" "TAS2R1 WILD-TYPE" "TAS2R1 WILD-TYPE" 
      TCGA-64-1676       TCGA-64-1677       TCGA-64-1678       TCGA-64-1680 
"TAS2R1 WILD-TYPE" "TAS2R1 WILD-TYPE" "TAS2R1 WILD-TYPE" "TAS2R1 WILD-TYPE" 
      TCGA-64-5774       TCGA-64-5775       TCGA-64-5778       TCGA-64-5779 
"TAS2R1 WILD-TYPE" "TAS2R1 WILD-TYPE"   "TAS2R1 MUTATED" "TAS2R1 WILD-TYPE" 
      TCGA-64-5781       TCGA-64-5815       TCGA-67-3770       TCGA-67-3771 
  "TAS2R1 MUTATED" "TAS2R1 WILD-TYPE" "TAS2R1 WILD-TYPE" "TAS2R1 WILD-TYPE" 
      TCGA-67-3772       TCGA-67-3773       TCGA-67-3774       TCGA-67-6215 
"TAS2R1 WILD-TYPE" "TAS2R1 WILD-TYPE" "TAS2R1 WILD-TYPE" "TAS2R1 WILD-TYPE" 
      TCGA-67-6216       TCGA-67-6217       TCGA-71-6725       TCGA-73-4658 
"TAS2R1 WILD-TYPE" "TAS2R1 WILD-TYPE" "TAS2R1 WILD-TYPE" "TAS2R1 WILD-TYPE" 
      TCGA-73-4659       TCGA-73-4662       TCGA-73-4666       TCGA-73-4668 
"TAS2R1 WILD-TYPE" "TAS2R1 WILD-TYPE" "TAS2R1 WILD-TYPE" "TAS2R1 WILD-TYPE" 
      TCGA-73-4670       TCGA-73-4675       TCGA-73-4676       TCGA-73-4677 
"TAS2R1 WILD-TYPE" "TAS2R1 WILD-TYPE" "TAS2R1 WILD-TYPE" "TAS2R1 WILD-TYPE" 
      TCGA-91-6828       TCGA-91-6829       TCGA-91-6831       TCGA-91-6835 
"TAS2R1 WILD-TYPE" "TAS2R1 WILD-TYPE" "TAS2R1 WILD-TYPE" "TAS2R1 WILD-TYPE" 
      TCGA-91-6836 
"TAS2R1 WILD-TYPE" 
      TCGA-05-4249       TCGA-05-4250       TCGA-05-4382       TCGA-05-4384 
"TAS2R1 WILD-TYPE" "TAS2R1 WILD-TYPE" "TAS2R1 WILD-TYPE" "TAS2R1 WILD-TYPE" 
      TCGA-05-4390       TCGA-05-4396       TCGA-05-4397       TCGA-05-4398 
"TAS2R1 WILD-TYPE" "TAS2R1 WILD-TYPE" "TAS2R1 WILD-TYPE" "TAS2R1 WILD-TYPE" 
      TCGA-05-4402       TCGA-05-4405       TCGA-05-4415       TCGA-05-4417 
"TAS2R1 WILD-TYPE" "TAS2R1 WILD-TYPE" "TAS2R1 WILD-TYPE" "TAS2R1 WILD-TYPE" 
      TCGA-05-4418       TCGA-05-4420       TCGA-05-4424       TCGA-05-4426 
"TAS2R1 WILD-TYPE" "TAS2R1 WILD-TYPE" "TAS2R1 WILD-TYPE" "TAS2R1 WILD-TYPE" 
      TCGA-05-4427       TCGA-05-4430       TCGA-05-4432       TCGA-05-4433 
"TAS2R1 WILD-TYPE" "TAS2R1 WILD-TYPE" "TAS2R1 WILD-TYPE" "TAS2R1 WILD-TYPE" 
      TCGA-05-4434       TCGA-05-5420       TCGA-05-5423       TCGA-05-5425 
"TAS2R1 WILD-TYPE"   "TAS2R1 MUTATED"   "TAS2R1 MUTATED" "TAS2R1 WILD-TYPE" 
      TCGA-05-5429       TCGA-05-5715       TCGA-35-3615       TCGA-35-4122 
"TAS2R1 WILD-TYPE" "TAS2R1 WILD-TYPE" "TAS2R1 WILD-TYPE" "TAS2R1 WILD-TYPE" 
      TCGA-35-4123       TCGA-35-5375       TCGA-38-4625       TCGA-38-4626 
"TAS2R1 WILD-TYPE" "TAS2R1 WILD-TYPE" "TAS2R1 WILD-TYPE" "TAS2R1 WILD-TYPE" 
      TCGA-38-4627       TCGA-38-4628       TCGA-38-4629       TCGA-38-4630 
"TAS2R1 WILD-TYPE" "TAS2R1 WILD-TYPE" "TAS2R1 WILD-TYPE" "TAS2R1 WILD-TYPE" 
      TCGA-38-4631       TCGA-38-4632       TCGA-38-6178       TCGA-44-2655 
"TAS2R1 WILD-TYPE" "TAS2R1 WILD-TYPE" "TAS2R1 WILD-TYPE" "TAS2R1 WILD-TYPE" 
      TCGA-44-2656       TCGA-44-2657       TCGA-44-2659       TCGA-44-2661 
"TAS2R1 WILD-TYPE" "TAS2R1 WILD-TYPE" "TAS2R1 WILD-TYPE" "TAS2R1 WILD-TYPE" 
      TCGA-44-2662       TCGA-44-2665       TCGA-44-2666       TCGA-44-2668 
"TAS2R1 WILD-TYPE" "TAS2R1 WILD-TYPE" "TAS2R1 WILD-TYPE" "TAS2R1 WILD-TYPE" 
      TCGA-44-3396       TCGA-44-3398       TCGA-44-3918       TCGA-44-3919 
"TAS2R1 WILD-TYPE" "TAS2R1 WILD-TYPE" "TAS2R1 WILD-TYPE" "TAS2R1 WILD-TYPE" 
      TCGA-44-4112       TCGA-44-5643       TCGA-44-5645       TCGA-44-6144 
"TAS2R1 WILD-TYPE" "TAS2R1 WILD-TYPE" "TAS2R1 WILD-TYPE" "TAS2R1 WILD-TYPE" 
      TCGA-44-6145       TCGA-44-6146       TCGA-44-6147       TCGA-44-6148 
"TAS2R1 WILD-TYPE" "TAS2R1 WILD-TYPE" "TAS2R1 WILD-TYPE" "TAS2R1 WILD-TYPE" 
      TCGA-44-6774       TCGA-44-6775       TCGA-44-6776       TCGA-44-6777 
"TAS2R1 WILD-TYPE" "TAS2R1 WILD-TYPE" "TAS2R1 WILD-TYPE" "TAS2R1 WILD-TYPE" 
      TCGA-44-6778       TCGA-44-6779       TCGA-49-4486       TCGA-49-4487 
"TAS2R1 WILD-TYPE" "TAS2R1 WILD-TYPE" "TAS2R1 WILD-TYPE" "TAS2R1 WILD-TYPE" 
      TCGA-49-4488       TCGA-49-4490       TCGA-49-4494       TCGA-49-4501 
"TAS2R1 WILD-TYPE" "TAS2R1 WILD-TYPE" "TAS2R1 WILD-TYPE" "TAS2R1 WILD-TYPE" 
      TCGA-49-4505       TCGA-49-4506       TCGA-49-4507       TCGA-49-4510 
"TAS2R1 WILD-TYPE" "TAS2R1 WILD-TYPE" "TAS2R1 WILD-TYPE" "TAS2R1 WILD-TYPE" 
      TCGA-49-4512       TCGA-49-4514       TCGA-49-6742       TCGA-49-6743 
"TAS2R1 WILD-TYPE" "TAS2R1 WILD-TYPE" "TAS2R1 WILD-TYPE" "TAS2R1 WILD-TYPE" 
      TCGA-49-6744       TCGA-49-6745       TCGA-50-5044       TCGA-50-5045 
"TAS2R1 WILD-TYPE" "TAS2R1 WILD-TYPE" "TAS2R1 WILD-TYPE" "TAS2R1 WILD-TYPE" 
      TCGA-50-5049       TCGA-50-5051       TCGA-50-5055       TCGA-50-5066 
"TAS2R1 WILD-TYPE" "TAS2R1 WILD-TYPE" "TAS2R1 WILD-TYPE" "TAS2R1 WILD-TYPE" 
      TCGA-50-5068       TCGA-50-5072       TCGA-50-5930       TCGA-50-5931 
"TAS2R1 WILD-TYPE" "TAS2R1 WILD-TYPE" "TAS2R1 WILD-TYPE" "TAS2R1 WILD-TYPE" 
      TCGA-50-5932       TCGA-50-5933       TCGA-50-5935       TCGA-50-5936 
"TAS2R1 WILD-TYPE" "TAS2R1 WILD-TYPE" "TAS2R1 WILD-TYPE" "TAS2R1 WILD-TYPE" 
      TCGA-50-5939       TCGA-50-5941       TCGA-50-5942       TCGA-50-5944 
"TAS2R1 WILD-TYPE" "TAS2R1 WILD-TYPE" "TAS2R1 WILD-TYPE" "TAS2R1 WILD-TYPE" 
      TCGA-50-5946       TCGA-50-6590       TCGA-50-6591       TCGA-50-6592 
"TAS2R1 WILD-TYPE" "TAS2R1 WILD-TYPE" "TAS2R1 WILD-TYPE" "TAS2R1 WILD-TYPE" 
      TCGA-50-6593       TCGA-50-6594       TCGA-50-6595       TCGA-50-6597 
"TAS2R1 WILD-TYPE"   "TAS2R1 MUTATED" "TAS2R1 WILD-TYPE" "TAS2R1 WILD-TYPE" 
      TCGA-55-1592       TCGA-55-1594       TCGA-55-1595       TCGA-55-1596 
"TAS2R1 WILD-TYPE" "TAS2R1 WILD-TYPE" "TAS2R1 WILD-TYPE" "TAS2R1 WILD-TYPE" 
      TCGA-55-5899       TCGA-55-6543       TCGA-55-6642       TCGA-55-6712 
  "TAS2R1 MUTATED" "TAS2R1 WILD-TYPE" "TAS2R1 WILD-TYPE" "TAS2R1 WILD-TYPE" 
      TCGA-64-1676       TCGA-64-1677       TCGA-64-1678       TCGA-64-1680 
"TAS2R1 WILD-TYPE" "TAS2R1 WILD-TYPE" "TAS2R1 WILD-TYPE" "TAS2R1 WILD-TYPE" 
      TCGA-64-5774       TCGA-64-5775       TCGA-64-5778       TCGA-64-5779 
"TAS2R1 WILD-TYPE" "TAS2R1 WILD-TYPE"   "TAS2R1 MUTATED" "TAS2R1 WILD-TYPE" 
      TCGA-64-5781       TCGA-64-5815       TCGA-67-3770       TCGA-67-3771 
  "TAS2R1 MUTATED" "TAS2R1 WILD-TYPE" "TAS2R1 WILD-TYPE" "TAS2R1 WILD-TYPE" 
      TCGA-67-3772       TCGA-67-3773       TCGA-67-3774       TCGA-67-6215 
"TAS2R1 WILD-TYPE" "TAS2R1 WILD-TYPE" "TAS2R1 WILD-TYPE" "TAS2R1 WILD-TYPE" 
      TCGA-67-6216       TCGA-67-6217       TCGA-71-6725       TCGA-73-4658 
"TAS2R1 WILD-TYPE" "TAS2R1 WILD-TYPE" "TAS2R1 WILD-TYPE" "TAS2R1 WILD-TYPE" 
      TCGA-73-4659       TCGA-73-4662       TCGA-73-4666       TCGA-73-4668 
"TAS2R1 WILD-TYPE" "TAS2R1 WILD-TYPE" "TAS2R1 WILD-TYPE" "TAS2R1 WILD-TYPE" 
      TCGA-73-4670       TCGA-73-4675       TCGA-73-4676       TCGA-73-4677 
"TAS2R1 WILD-TYPE" "TAS2R1 WILD-TYPE" "TAS2R1 WILD-TYPE" "TAS2R1 WILD-TYPE" 
      TCGA-91-6828       TCGA-91-6829       TCGA-91-6831       TCGA-91-6835 
"TAS2R1 WILD-TYPE" "TAS2R1 WILD-TYPE" "TAS2R1 WILD-TYPE" "TAS2R1 WILD-TYPE" 
      TCGA-91-6836 
"TAS2R1 WILD-TYPE" 
      TCGA-05-4249       TCGA-05-4250       TCGA-05-4382       TCGA-05-4384 
"TAS2R1 WILD-TYPE" "TAS2R1 WILD-TYPE" "TAS2R1 WILD-TYPE" "TAS2R1 WILD-TYPE" 
      TCGA-05-4390       TCGA-05-4396       TCGA-05-4397       TCGA-05-4398 
"TAS2R1 WILD-TYPE" "TAS2R1 WILD-TYPE" "TAS2R1 WILD-TYPE" "TAS2R1 WILD-TYPE" 
      TCGA-05-4402       TCGA-05-4405       TCGA-05-4415       TCGA-05-4417 
"TAS2R1 WILD-TYPE" "TAS2R1 WILD-TYPE" "TAS2R1 WILD-TYPE" "TAS2R1 WILD-TYPE" 
      TCGA-05-4418       TCGA-05-4420       TCGA-05-4424       TCGA-05-4426 
"TAS2R1 WILD-TYPE" "TAS2R1 WILD-TYPE" "TAS2R1 WILD-TYPE" "TAS2R1 WILD-TYPE" 
      TCGA-05-4427       TCGA-05-4430       TCGA-05-4432       TCGA-05-4433 
"TAS2R1 WILD-TYPE" "TAS2R1 WILD-TYPE" "TAS2R1 WILD-TYPE" "TAS2R1 WILD-TYPE" 
      TCGA-05-4434       TCGA-05-5420       TCGA-05-5423       TCGA-05-5425 
"TAS2R1 WILD-TYPE"   "TAS2R1 MUTATED"   "TAS2R1 MUTATED" "TAS2R1 WILD-TYPE" 
      TCGA-05-5429       TCGA-05-5715       TCGA-35-3615       TCGA-35-4122 
"TAS2R1 WILD-TYPE" "TAS2R1 WILD-TYPE" "TAS2R1 WILD-TYPE" "TAS2R1 WILD-TYPE" 
      TCGA-35-4123       TCGA-35-5375       TCGA-38-4625       TCGA-38-4626 
"TAS2R1 WILD-TYPE" "TAS2R1 WILD-TYPE" "TAS2R1 WILD-TYPE" "TAS2R1 WILD-TYPE" 
      TCGA-38-4627       TCGA-38-4628       TCGA-38-4629       TCGA-38-4630 
"TAS2R1 WILD-TYPE" "TAS2R1 WILD-TYPE" "TAS2R1 WILD-TYPE" "TAS2R1 WILD-TYPE" 
      TCGA-38-4631       TCGA-38-4632       TCGA-38-6178       TCGA-44-2655 
"TAS2R1 WILD-TYPE" "TAS2R1 WILD-TYPE" "TAS2R1 WILD-TYPE" "TAS2R1 WILD-TYPE" 
      TCGA-44-2656       TCGA-44-2657       TCGA-44-2659       TCGA-44-2661 
"TAS2R1 WILD-TYPE" "TAS2R1 WILD-TYPE" "TAS2R1 WILD-TYPE" "TAS2R1 WILD-TYPE" 
      TCGA-44-2662       TCGA-44-2665       TCGA-44-2666       TCGA-44-2668 
"TAS2R1 WILD-TYPE" "TAS2R1 WILD-TYPE" "TAS2R1 WILD-TYPE" "TAS2R1 WILD-TYPE" 
      TCGA-44-3396       TCGA-44-3398       TCGA-44-3918       TCGA-44-3919 
"TAS2R1 WILD-TYPE" "TAS2R1 WILD-TYPE" "TAS2R1 WILD-TYPE" "TAS2R1 WILD-TYPE" 
      TCGA-44-4112       TCGA-44-5643       TCGA-44-5645       TCGA-44-6144 
"TAS2R1 WILD-TYPE" "TAS2R1 WILD-TYPE" "TAS2R1 WILD-TYPE" "TAS2R1 WILD-TYPE" 
      TCGA-44-6145       TCGA-44-6146       TCGA-44-6147       TCGA-44-6148 
"TAS2R1 WILD-TYPE" "TAS2R1 WILD-TYPE" "TAS2R1 WILD-TYPE" "TAS2R1 WILD-TYPE" 
      TCGA-44-6774       TCGA-44-6775       TCGA-44-6776       TCGA-44-6777 
"TAS2R1 WILD-TYPE" "TAS2R1 WILD-TYPE" "TAS2R1 WILD-TYPE" "TAS2R1 WILD-TYPE" 
      TCGA-44-6778       TCGA-44-6779       TCGA-49-4486       TCGA-49-4487 
"TAS2R1 WILD-TYPE" "TAS2R1 WILD-TYPE" "TAS2R1 WILD-TYPE" "TAS2R1 WILD-TYPE" 
      TCGA-49-4488       TCGA-49-4490       TCGA-49-4494       TCGA-49-4501 
"TAS2R1 WILD-TYPE" "TAS2R1 WILD-TYPE" "TAS2R1 WILD-TYPE" "TAS2R1 WILD-TYPE" 
      TCGA-49-4505       TCGA-49-4506       TCGA-49-4507       TCGA-49-4510 
"TAS2R1 WILD-TYPE" "TAS2R1 WILD-TYPE" "TAS2R1 WILD-TYPE" "TAS2R1 WILD-TYPE" 
      TCGA-49-4512       TCGA-49-4514       TCGA-49-6742       TCGA-49-6743 
"TAS2R1 WILD-TYPE" "TAS2R1 WILD-TYPE" "TAS2R1 WILD-TYPE" "TAS2R1 WILD-TYPE" 
      TCGA-49-6744       TCGA-49-6745       TCGA-50-5044       TCGA-50-5045 
"TAS2R1 WILD-TYPE" "TAS2R1 WILD-TYPE" "TAS2R1 WILD-TYPE" "TAS2R1 WILD-TYPE" 
      TCGA-50-5049       TCGA-50-5051       TCGA-50-5055       TCGA-50-5066 
"TAS2R1 WILD-TYPE" "TAS2R1 WILD-TYPE" "TAS2R1 WILD-TYPE" "TAS2R1 WILD-TYPE" 
      TCGA-50-5068       TCGA-50-5072       TCGA-50-5930       TCGA-50-5931 
"TAS2R1 WILD-TYPE" "TAS2R1 WILD-TYPE" "TAS2R1 WILD-TYPE" "TAS2R1 WILD-TYPE" 
      TCGA-50-5932       TCGA-50-5933       TCGA-50-5935       TCGA-50-5936 
"TAS2R1 WILD-TYPE" "TAS2R1 WILD-TYPE" "TAS2R1 WILD-TYPE" "TAS2R1 WILD-TYPE" 
      TCGA-50-5939       TCGA-50-5941       TCGA-50-5942       TCGA-50-5944 
"TAS2R1 WILD-TYPE" "TAS2R1 WILD-TYPE" "TAS2R1 WILD-TYPE" "TAS2R1 WILD-TYPE" 
      TCGA-50-5946       TCGA-50-6590       TCGA-50-6591       TCGA-50-6592 
"TAS2R1 WILD-TYPE" "TAS2R1 WILD-TYPE" "TAS2R1 WILD-TYPE" "TAS2R1 WILD-TYPE" 
      TCGA-50-6593       TCGA-50-6594       TCGA-50-6595       TCGA-50-6597 
"TAS2R1 WILD-TYPE"   "TAS2R1 MUTATED" "TAS2R1 WILD-TYPE" "TAS2R1 WILD-TYPE" 
      TCGA-55-1592       TCGA-55-1594       TCGA-55-1595       TCGA-55-1596 
"TAS2R1 WILD-TYPE" "TAS2R1 WILD-TYPE" "TAS2R1 WILD-TYPE" "TAS2R1 WILD-TYPE" 
      TCGA-55-5899       TCGA-55-6543       TCGA-55-6642       TCGA-55-6712 
  "TAS2R1 MUTATED" "TAS2R1 WILD-TYPE" "TAS2R1 WILD-TYPE" "TAS2R1 WILD-TYPE" 
      TCGA-64-1676       TCGA-64-1677       TCGA-64-1678       TCGA-64-1680 
"TAS2R1 WILD-TYPE" "TAS2R1 WILD-TYPE" "TAS2R1 WILD-TYPE" "TAS2R1 WILD-TYPE" 
      TCGA-64-5774       TCGA-64-5775       TCGA-64-5778       TCGA-64-5779 
"TAS2R1 WILD-TYPE" "TAS2R1 WILD-TYPE"   "TAS2R1 MUTATED" "TAS2R1 WILD-TYPE" 
      TCGA-64-5781       TCGA-64-5815       TCGA-67-3770       TCGA-67-3771 
  "TAS2R1 MUTATED" "TAS2R1 WILD-TYPE" "TAS2R1 WILD-TYPE" "TAS2R1 WILD-TYPE" 
      TCGA-67-3772       TCGA-67-3773       TCGA-67-3774       TCGA-67-6215 
"TAS2R1 WILD-TYPE" "TAS2R1 WILD-TYPE" "TAS2R1 WILD-TYPE" "TAS2R1 WILD-TYPE" 
      TCGA-67-6216       TCGA-67-6217       TCGA-71-6725       TCGA-73-4658 
"TAS2R1 WILD-TYPE" "TAS2R1 WILD-TYPE" "TAS2R1 WILD-TYPE" "TAS2R1 WILD-TYPE" 
      TCGA-73-4659       TCGA-73-4662       TCGA-73-4666       TCGA-73-4668 
"TAS2R1 WILD-TYPE" "TAS2R1 WILD-TYPE" "TAS2R1 WILD-TYPE" "TAS2R1 WILD-TYPE" 
      TCGA-73-4670       TCGA-73-4675       TCGA-73-4676       TCGA-73-4677 
"TAS2R1 WILD-TYPE" "TAS2R1 WILD-TYPE" "TAS2R1 WILD-TYPE" "TAS2R1 WILD-TYPE" 
      TCGA-91-6828       TCGA-91-6829       TCGA-91-6831       TCGA-91-6835 
"TAS2R1 WILD-TYPE" "TAS2R1 WILD-TYPE" "TAS2R1 WILD-TYPE" "TAS2R1 WILD-TYPE" 
      TCGA-91-6836 
"TAS2R1 WILD-TYPE" 
[1] "hr=" "1.4"
D144V2, continuous
D144V3, binary
[1] "tbl2"
                  cls
clus               [,1] [,2]
  TAS2R1 MUTATED      2    4
  TAS2R1 WILD-TYPE   91   75
        clus
vv       TAS2R1 MUTATED TAS2R1 WILD-TYPE
  FEMALE              2               91
  MALE                4               75
D144V4, continuous
[1] "Remove cluster labels:" "TAS2R1 MUTATED"        
clus
  TAS2R1 MUTATED TAS2R1 WILD-TYPE 
               1               11 
      TCGA-35-4122       TCGA-35-4123       TCGA-35-5375       TCGA-64-1677 
"TAS2R1 WILD-TYPE" "TAS2R1 WILD-TYPE" "TAS2R1 WILD-TYPE" "TAS2R1 WILD-TYPE" 
      TCGA-71-6725       TCGA-73-4659       TCGA-73-4662       TCGA-73-4666 
"TAS2R1 WILD-TYPE" "TAS2R1 WILD-TYPE" "TAS2R1 WILD-TYPE" "TAS2R1 WILD-TYPE" 
      TCGA-73-4668       TCGA-73-4676       TCGA-75-5122 
"TAS2R1 WILD-TYPE" "TAS2R1 WILD-TYPE" "TAS2R1 WILD-TYPE" 
D144V5, multiclass
D144V6, multiclass
    clus
vv   TAS2R1 MUTATED TAS2R1 WILD-TYPE
  T1              1               40
  T2              4              104
  T3              1               13
  T4              0                8
D144V7, multiclass
       clus
vv      TAS2R1 MUTATED TAS2R1 WILD-TYPE
  N0                 2               93
  N1                 2               35
  N2+N3              2               33
D144V8, multiclass
    clus
vv   TAS2R1 MUTATED TAS2R1 WILD-TYPE
  M0              6              131
  M1              0                9
  MX              0               22
D144V9, multiclass
     clus
vv    TAS2R1 MUTATED TAS2R1 WILD-TYPE
  I                3               85
  II               1               32
  III              2               37
  IV               0                9
D144V10, binary
[1] "tbl2"
                  cls
clus               [,1] [,2]
  TAS2R1 MUTATED      0    6
  TAS2R1 WILD-TYPE   16  150
     clus
vv    TAS2R1 MUTATED TAS2R1 WILD-TYPE
  NO               0               16
  YES              6              150
D144V11, continuous
D144V12, continuous
D144V13, multiclass
                                             clus
vv                                            TAS2R1 MUTATED TAS2R1 WILD-TYPE
  CURRENT REFORMED SMOKER FOR < OR = 15 YEARS              4               58
  CURRENT REFORMED SMOKER FOR > 15 YEARS                   1               45
  CURRENT SMOKER                                           1               27
  LIFELONG NON-SMOKER                                      0               24
D144V14, continuous

Clustering(145) Variable = UGT2B10 MUTATION ANALYSIS
D145V1, survival
                   sevent
clus2                0  1
  UGT2B10 MUTATED    9  2
  UGT2B10 WILD-TYPE 90 48
  UGT2B10 MUTATED UGT2B10 WILD-TYPE 
               11               138 
  UGT2B10 MUTATED UGT2B10 WILD-TYPE 
                2                48 
$`UGT2B10 MUTATED`
TCGA-05-4382 TCGA-05-4396 TCGA-05-4424 TCGA-05-4432 TCGA-44-3396 TCGA-44-4112 
       19.92         9.96        30.02        25.02        10.22         4.60 
TCGA-49-6744 TCGA-50-5066 TCGA-55-5899 TCGA-64-5775 TCGA-64-5815 
       12.99         9.76         2.86         0.10         7.33 

$`UGT2B10 WILD-TYPE`
TCGA-05-4249 TCGA-05-4250 TCGA-05-4384 TCGA-05-4390 TCGA-05-4397 TCGA-05-4398 
       38.07         3.98        14.01        37.02        24.03        47.05 
TCGA-05-4402 TCGA-05-4405 TCGA-05-4415 TCGA-05-4417 TCGA-05-4418 TCGA-05-4420 
        8.02        20.05         2.96        14.93         8.98        29.95 
TCGA-05-4426 TCGA-05-4427 TCGA-05-4430 TCGA-05-4433 TCGA-05-4434 TCGA-05-5420 
       26.01        26.01        25.02        24.00        15.02         1.02 
TCGA-05-5423 TCGA-05-5425 TCGA-05-5429 TCGA-05-5715 TCGA-35-3615 TCGA-35-4122 
        4.96         2.96         0.99         2.04         0.46         7.36 
TCGA-35-4123 TCGA-35-5375 TCGA-38-4625 TCGA-38-4626 TCGA-38-4627 TCGA-38-4628 
        5.95         8.68        47.61        85.32        37.71        49.02 
TCGA-38-4629 TCGA-38-4630 TCGA-38-4631 TCGA-38-4632 TCGA-38-6178 TCGA-44-2655 
       28.37        35.28        11.64        44.61         5.19        18.87 
TCGA-44-2656 TCGA-44-2657 TCGA-44-2659 TCGA-44-2661 TCGA-44-2662 TCGA-44-2665 
       19.10        13.15        17.39         3.39        15.78        13.15 
TCGA-44-2666 TCGA-44-2668 TCGA-44-3398 TCGA-44-3918 TCGA-44-3919 TCGA-44-5643 
        3.19         8.09         8.32         6.44         6.21         3.48 
TCGA-44-5645 TCGA-44-6144 TCGA-44-6145 TCGA-44-6146 TCGA-44-6147 TCGA-44-6148 
        6.84         0.30         3.35         9.93         7.76         3.12 
TCGA-44-6774 TCGA-44-6775 TCGA-44-6776 TCGA-44-6777 TCGA-44-6778 TCGA-44-6779 
        5.42         2.70        63.72        32.45        36.49        16.41 
TCGA-49-4486 TCGA-49-4487 TCGA-49-4488 TCGA-49-4490 TCGA-49-4494 TCGA-49-4501 
       76.21        28.11        28.57        12.66        35.54        46.72 
TCGA-49-4505 TCGA-49-4506 TCGA-49-4507 TCGA-49-4510 TCGA-49-4512 TCGA-49-4514 
       14.07        32.84         8.81        29.46        29.75        43.20 
TCGA-49-6742 TCGA-49-6743 TCGA-49-6745 TCGA-50-5044 TCGA-50-5045 TCGA-50-5049 
       15.02        12.13         4.93        20.48        71.47        48.82 
TCGA-50-5051 TCGA-50-5055 TCGA-50-5068 TCGA-50-5072 TCGA-50-5930 TCGA-50-5931 
       14.96        25.81        49.28         8.05         9.27         8.78 
TCGA-50-5932 TCGA-50-5933 TCGA-50-5935 TCGA-50-5936 TCGA-50-5939 TCGA-50-5941 
       35.87        77.88        21.47         8.45        15.12         9.37 
TCGA-50-5942 TCGA-50-5944 TCGA-50-5946 TCGA-50-6590 TCGA-50-6591 TCGA-50-6592 
        4.44        12.26        11.47        42.31         3.88        25.51 
TCGA-50-6593 TCGA-50-6594 TCGA-50-6595 TCGA-50-6597 TCGA-55-1592 TCGA-55-1594 
       11.05        12.16         6.21        33.37        23.05        38.73 
TCGA-55-1595 TCGA-55-1596 TCGA-55-6543 TCGA-55-6642 TCGA-55-6712 TCGA-64-1676 
       48.62        45.17         0.07        32.61         0.79        56.81 
TCGA-64-1677 TCGA-64-1678 TCGA-64-1680 TCGA-64-5774 TCGA-64-5778 TCGA-64-5779 
       20.65        39.09        37.02        83.84        30.44        16.67 
TCGA-64-5781 TCGA-67-3770 TCGA-67-3771 TCGA-67-3772 TCGA-67-3773 TCGA-67-3774 
       39.52         0.99         1.97         0.59         2.04         0.59 
TCGA-67-6215 TCGA-67-6216 TCGA-67-6217 TCGA-71-6725 TCGA-73-4658 TCGA-73-4659 
        0.89         0.69        13.87         2.01        52.57        23.38 
TCGA-73-4662 TCGA-73-4666 TCGA-73-4668 TCGA-73-4670 TCGA-73-4675 TCGA-73-4676 
       29.95        20.28        15.35         0.46         1.32         4.01 
TCGA-73-4677 TCGA-91-6828 TCGA-91-6829 TCGA-91-6831 TCGA-91-6835 TCGA-91-6836 
        1.25         1.22        41.33         1.28         1.15         0.36 

  UGT2B10 MUTATED UGT2B10 WILD-TYPE 
             0.10              0.07 
  UGT2B10 MUTATED UGT2B10 WILD-TYPE 
            30.02             85.32 
  UGT2B10 MUTATED UGT2B10 WILD-TYPE 
             9.96             14.50 
[1] "0.1 - 30.0 (10.0)" "0.1 - 85.3 (14.5)"
       TCGA-05-4249        TCGA-05-4250        TCGA-05-4382        TCGA-05-4384 
"UGT2B10 WILD-TYPE" "UGT2B10 WILD-TYPE"   "UGT2B10 MUTATED" "UGT2B10 WILD-TYPE" 
       TCGA-05-4390        TCGA-05-4396        TCGA-05-4397        TCGA-05-4398 
"UGT2B10 WILD-TYPE"   "UGT2B10 MUTATED" "UGT2B10 WILD-TYPE" "UGT2B10 WILD-TYPE" 
       TCGA-05-4402        TCGA-05-4405        TCGA-05-4415        TCGA-05-4417 
"UGT2B10 WILD-TYPE" "UGT2B10 WILD-TYPE" "UGT2B10 WILD-TYPE" "UGT2B10 WILD-TYPE" 
       TCGA-05-4418        TCGA-05-4420        TCGA-05-4424        TCGA-05-4426 
"UGT2B10 WILD-TYPE" "UGT2B10 WILD-TYPE"   "UGT2B10 MUTATED" "UGT2B10 WILD-TYPE" 
       TCGA-05-4427        TCGA-05-4430        TCGA-05-4432        TCGA-05-4433 
"UGT2B10 WILD-TYPE" "UGT2B10 WILD-TYPE"   "UGT2B10 MUTATED" "UGT2B10 WILD-TYPE" 
       TCGA-05-4434        TCGA-05-5420        TCGA-05-5423        TCGA-05-5425 
"UGT2B10 WILD-TYPE" "UGT2B10 WILD-TYPE" "UGT2B10 WILD-TYPE" "UGT2B10 WILD-TYPE" 
       TCGA-05-5429        TCGA-05-5715        TCGA-35-3615        TCGA-35-4122 
"UGT2B10 WILD-TYPE" "UGT2B10 WILD-TYPE" "UGT2B10 WILD-TYPE" "UGT2B10 WILD-TYPE" 
       TCGA-35-4123        TCGA-35-5375        TCGA-38-4625        TCGA-38-4626 
"UGT2B10 WILD-TYPE" "UGT2B10 WILD-TYPE" "UGT2B10 WILD-TYPE" "UGT2B10 WILD-TYPE" 
       TCGA-38-4627        TCGA-38-4628        TCGA-38-4629        TCGA-38-4630 
"UGT2B10 WILD-TYPE" "UGT2B10 WILD-TYPE" "UGT2B10 WILD-TYPE" "UGT2B10 WILD-TYPE" 
       TCGA-38-4631        TCGA-38-4632        TCGA-38-6178        TCGA-44-2655 
"UGT2B10 WILD-TYPE" "UGT2B10 WILD-TYPE" "UGT2B10 WILD-TYPE" "UGT2B10 WILD-TYPE" 
       TCGA-44-2656        TCGA-44-2657        TCGA-44-2659        TCGA-44-2661 
"UGT2B10 WILD-TYPE" "UGT2B10 WILD-TYPE" "UGT2B10 WILD-TYPE" "UGT2B10 WILD-TYPE" 
       TCGA-44-2662        TCGA-44-2665        TCGA-44-2666        TCGA-44-2668 
"UGT2B10 WILD-TYPE" "UGT2B10 WILD-TYPE" "UGT2B10 WILD-TYPE" "UGT2B10 WILD-TYPE" 
       TCGA-44-3396        TCGA-44-3398        TCGA-44-3918        TCGA-44-3919 
  "UGT2B10 MUTATED" "UGT2B10 WILD-TYPE" "UGT2B10 WILD-TYPE" "UGT2B10 WILD-TYPE" 
       TCGA-44-4112        TCGA-44-5643        TCGA-44-5645        TCGA-44-6144 
  "UGT2B10 MUTATED" "UGT2B10 WILD-TYPE" "UGT2B10 WILD-TYPE" "UGT2B10 WILD-TYPE" 
       TCGA-44-6145        TCGA-44-6146        TCGA-44-6147        TCGA-44-6148 
"UGT2B10 WILD-TYPE" "UGT2B10 WILD-TYPE" "UGT2B10 WILD-TYPE" "UGT2B10 WILD-TYPE" 
       TCGA-44-6774        TCGA-44-6775        TCGA-44-6776        TCGA-44-6777 
"UGT2B10 WILD-TYPE" "UGT2B10 WILD-TYPE" "UGT2B10 WILD-TYPE" "UGT2B10 WILD-TYPE" 
       TCGA-44-6778        TCGA-44-6779        TCGA-49-4486        TCGA-49-4487 
"UGT2B10 WILD-TYPE" "UGT2B10 WILD-TYPE" "UGT2B10 WILD-TYPE" "UGT2B10 WILD-TYPE" 
       TCGA-49-4488        TCGA-49-4490        TCGA-49-4494        TCGA-49-4501 
"UGT2B10 WILD-TYPE" "UGT2B10 WILD-TYPE" "UGT2B10 WILD-TYPE" "UGT2B10 WILD-TYPE" 
       TCGA-49-4505        TCGA-49-4506        TCGA-49-4507        TCGA-49-4510 
"UGT2B10 WILD-TYPE" "UGT2B10 WILD-TYPE" "UGT2B10 WILD-TYPE" "UGT2B10 WILD-TYPE" 
       TCGA-49-4512        TCGA-49-4514        TCGA-49-6742        TCGA-49-6743 
"UGT2B10 WILD-TYPE" "UGT2B10 WILD-TYPE" "UGT2B10 WILD-TYPE" "UGT2B10 WILD-TYPE" 
       TCGA-49-6744        TCGA-49-6745        TCGA-50-5044        TCGA-50-5045 
  "UGT2B10 MUTATED" "UGT2B10 WILD-TYPE" "UGT2B10 WILD-TYPE" "UGT2B10 WILD-TYPE" 
       TCGA-50-5049        TCGA-50-5051        TCGA-50-5055        TCGA-50-5066 
"UGT2B10 WILD-TYPE" "UGT2B10 WILD-TYPE" "UGT2B10 WILD-TYPE"   "UGT2B10 MUTATED" 
       TCGA-50-5068        TCGA-50-5072        TCGA-50-5930        TCGA-50-5931 
"UGT2B10 WILD-TYPE" "UGT2B10 WILD-TYPE" "UGT2B10 WILD-TYPE" "UGT2B10 WILD-TYPE" 
       TCGA-50-5932        TCGA-50-5933        TCGA-50-5935        TCGA-50-5936 
"UGT2B10 WILD-TYPE" "UGT2B10 WILD-TYPE" "UGT2B10 WILD-TYPE" "UGT2B10 WILD-TYPE" 
       TCGA-50-5939        TCGA-50-5941        TCGA-50-5942        TCGA-50-5944 
"UGT2B10 WILD-TYPE" "UGT2B10 WILD-TYPE" "UGT2B10 WILD-TYPE" "UGT2B10 WILD-TYPE" 
       TCGA-50-5946        TCGA-50-6590        TCGA-50-6591        TCGA-50-6592 
"UGT2B10 WILD-TYPE" "UGT2B10 WILD-TYPE" "UGT2B10 WILD-TYPE" "UGT2B10 WILD-TYPE" 
       TCGA-50-6593        TCGA-50-6594        TCGA-50-6595        TCGA-50-6597 
"UGT2B10 WILD-TYPE" "UGT2B10 WILD-TYPE" "UGT2B10 WILD-TYPE" "UGT2B10 WILD-TYPE" 
       TCGA-55-1592        TCGA-55-1594        TCGA-55-1595        TCGA-55-1596 
"UGT2B10 WILD-TYPE" "UGT2B10 WILD-TYPE" "UGT2B10 WILD-TYPE" "UGT2B10 WILD-TYPE" 
       TCGA-55-5899        TCGA-55-6543        TCGA-55-6642        TCGA-55-6712 
  "UGT2B10 MUTATED" "UGT2B10 WILD-TYPE" "UGT2B10 WILD-TYPE" "UGT2B10 WILD-TYPE" 
       TCGA-64-1676        TCGA-64-1677        TCGA-64-1678        TCGA-64-1680 
"UGT2B10 WILD-TYPE" "UGT2B10 WILD-TYPE" "UGT2B10 WILD-TYPE" "UGT2B10 WILD-TYPE" 
       TCGA-64-5774        TCGA-64-5775        TCGA-64-5778        TCGA-64-5779 
"UGT2B10 WILD-TYPE"   "UGT2B10 MUTATED" "UGT2B10 WILD-TYPE" "UGT2B10 WILD-TYPE" 
       TCGA-64-5781        TCGA-64-5815        TCGA-67-3770        TCGA-67-3771 
"UGT2B10 WILD-TYPE"   "UGT2B10 MUTATED" "UGT2B10 WILD-TYPE" "UGT2B10 WILD-TYPE" 
       TCGA-67-3772        TCGA-67-3773        TCGA-67-3774        TCGA-67-6215 
"UGT2B10 WILD-TYPE" "UGT2B10 WILD-TYPE" "UGT2B10 WILD-TYPE" "UGT2B10 WILD-TYPE" 
       TCGA-67-6216        TCGA-67-6217        TCGA-71-6725        TCGA-73-4658 
"UGT2B10 WILD-TYPE" "UGT2B10 WILD-TYPE" "UGT2B10 WILD-TYPE" "UGT2B10 WILD-TYPE" 
       TCGA-73-4659        TCGA-73-4662        TCGA-73-4666        TCGA-73-4668 
"UGT2B10 WILD-TYPE" "UGT2B10 WILD-TYPE" "UGT2B10 WILD-TYPE" "UGT2B10 WILD-TYPE" 
       TCGA-73-4670        TCGA-73-4675        TCGA-73-4676        TCGA-73-4677 
"UGT2B10 WILD-TYPE" "UGT2B10 WILD-TYPE" "UGT2B10 WILD-TYPE" "UGT2B10 WILD-TYPE" 
       TCGA-91-6828        TCGA-91-6829        TCGA-91-6831        TCGA-91-6835 
"UGT2B10 WILD-TYPE" "UGT2B10 WILD-TYPE" "UGT2B10 WILD-TYPE" "UGT2B10 WILD-TYPE" 
       TCGA-91-6836 
"UGT2B10 WILD-TYPE" 
       TCGA-05-4249        TCGA-05-4250        TCGA-05-4382        TCGA-05-4384 
"UGT2B10 WILD-TYPE" "UGT2B10 WILD-TYPE"   "UGT2B10 MUTATED" "UGT2B10 WILD-TYPE" 
       TCGA-05-4390        TCGA-05-4396        TCGA-05-4397        TCGA-05-4398 
"UGT2B10 WILD-TYPE"   "UGT2B10 MUTATED" "UGT2B10 WILD-TYPE" "UGT2B10 WILD-TYPE" 
       TCGA-05-4402        TCGA-05-4405        TCGA-05-4415        TCGA-05-4417 
"UGT2B10 WILD-TYPE" "UGT2B10 WILD-TYPE" "UGT2B10 WILD-TYPE" "UGT2B10 WILD-TYPE" 
       TCGA-05-4418        TCGA-05-4420        TCGA-05-4424        TCGA-05-4426 
"UGT2B10 WILD-TYPE" "UGT2B10 WILD-TYPE"   "UGT2B10 MUTATED" "UGT2B10 WILD-TYPE" 
       TCGA-05-4427        TCGA-05-4430        TCGA-05-4432        TCGA-05-4433 
"UGT2B10 WILD-TYPE" "UGT2B10 WILD-TYPE"   "UGT2B10 MUTATED" "UGT2B10 WILD-TYPE" 
       TCGA-05-4434        TCGA-05-5420        TCGA-05-5423        TCGA-05-5425 
"UGT2B10 WILD-TYPE" "UGT2B10 WILD-TYPE" "UGT2B10 WILD-TYPE" "UGT2B10 WILD-TYPE" 
       TCGA-05-5429        TCGA-05-5715        TCGA-35-3615        TCGA-35-4122 
"UGT2B10 WILD-TYPE" "UGT2B10 WILD-TYPE" "UGT2B10 WILD-TYPE" "UGT2B10 WILD-TYPE" 
       TCGA-35-4123        TCGA-35-5375        TCGA-38-4625        TCGA-38-4626 
"UGT2B10 WILD-TYPE" "UGT2B10 WILD-TYPE" "UGT2B10 WILD-TYPE" "UGT2B10 WILD-TYPE" 
       TCGA-38-4627        TCGA-38-4628        TCGA-38-4629        TCGA-38-4630 
"UGT2B10 WILD-TYPE" "UGT2B10 WILD-TYPE" "UGT2B10 WILD-TYPE" "UGT2B10 WILD-TYPE" 
       TCGA-38-4631        TCGA-38-4632        TCGA-38-6178        TCGA-44-2655 
"UGT2B10 WILD-TYPE" "UGT2B10 WILD-TYPE" "UGT2B10 WILD-TYPE" "UGT2B10 WILD-TYPE" 
       TCGA-44-2656        TCGA-44-2657        TCGA-44-2659        TCGA-44-2661 
"UGT2B10 WILD-TYPE" "UGT2B10 WILD-TYPE" "UGT2B10 WILD-TYPE" "UGT2B10 WILD-TYPE" 
       TCGA-44-2662        TCGA-44-2665        TCGA-44-2666        TCGA-44-2668 
"UGT2B10 WILD-TYPE" "UGT2B10 WILD-TYPE" "UGT2B10 WILD-TYPE" "UGT2B10 WILD-TYPE" 
       TCGA-44-3396        TCGA-44-3398        TCGA-44-3918        TCGA-44-3919 
  "UGT2B10 MUTATED" "UGT2B10 WILD-TYPE" "UGT2B10 WILD-TYPE" "UGT2B10 WILD-TYPE" 
       TCGA-44-4112        TCGA-44-5643        TCGA-44-5645        TCGA-44-6144 
  "UGT2B10 MUTATED" "UGT2B10 WILD-TYPE" "UGT2B10 WILD-TYPE" "UGT2B10 WILD-TYPE" 
       TCGA-44-6145        TCGA-44-6146        TCGA-44-6147        TCGA-44-6148 
"UGT2B10 WILD-TYPE" "UGT2B10 WILD-TYPE" "UGT2B10 WILD-TYPE" "UGT2B10 WILD-TYPE" 
       TCGA-44-6774        TCGA-44-6775        TCGA-44-6776        TCGA-44-6777 
"UGT2B10 WILD-TYPE" "UGT2B10 WILD-TYPE" "UGT2B10 WILD-TYPE" "UGT2B10 WILD-TYPE" 
       TCGA-44-6778        TCGA-44-6779        TCGA-49-4486        TCGA-49-4487 
"UGT2B10 WILD-TYPE" "UGT2B10 WILD-TYPE" "UGT2B10 WILD-TYPE" "UGT2B10 WILD-TYPE" 
       TCGA-49-4488        TCGA-49-4490        TCGA-49-4494        TCGA-49-4501 
"UGT2B10 WILD-TYPE" "UGT2B10 WILD-TYPE" "UGT2B10 WILD-TYPE" "UGT2B10 WILD-TYPE" 
       TCGA-49-4505        TCGA-49-4506        TCGA-49-4507        TCGA-49-4510 
"UGT2B10 WILD-TYPE" "UGT2B10 WILD-TYPE" "UGT2B10 WILD-TYPE" "UGT2B10 WILD-TYPE" 
       TCGA-49-4512        TCGA-49-4514        TCGA-49-6742        TCGA-49-6743 
"UGT2B10 WILD-TYPE" "UGT2B10 WILD-TYPE" "UGT2B10 WILD-TYPE" "UGT2B10 WILD-TYPE" 
       TCGA-49-6744        TCGA-49-6745        TCGA-50-5044        TCGA-50-5045 
  "UGT2B10 MUTATED" "UGT2B10 WILD-TYPE" "UGT2B10 WILD-TYPE" "UGT2B10 WILD-TYPE" 
       TCGA-50-5049        TCGA-50-5051        TCGA-50-5055        TCGA-50-5066 
"UGT2B10 WILD-TYPE" "UGT2B10 WILD-TYPE" "UGT2B10 WILD-TYPE"   "UGT2B10 MUTATED" 
       TCGA-50-5068        TCGA-50-5072        TCGA-50-5930        TCGA-50-5931 
"UGT2B10 WILD-TYPE" "UGT2B10 WILD-TYPE" "UGT2B10 WILD-TYPE" "UGT2B10 WILD-TYPE" 
       TCGA-50-5932        TCGA-50-5933        TCGA-50-5935        TCGA-50-5936 
"UGT2B10 WILD-TYPE" "UGT2B10 WILD-TYPE" "UGT2B10 WILD-TYPE" "UGT2B10 WILD-TYPE" 
       TCGA-50-5939        TCGA-50-5941        TCGA-50-5942        TCGA-50-5944 
"UGT2B10 WILD-TYPE" "UGT2B10 WILD-TYPE" "UGT2B10 WILD-TYPE" "UGT2B10 WILD-TYPE" 
       TCGA-50-5946        TCGA-50-6590        TCGA-50-6591        TCGA-50-6592 
"UGT2B10 WILD-TYPE" "UGT2B10 WILD-TYPE" "UGT2B10 WILD-TYPE" "UGT2B10 WILD-TYPE" 
       TCGA-50-6593        TCGA-50-6594        TCGA-50-6595        TCGA-50-6597 
"UGT2B10 WILD-TYPE" "UGT2B10 WILD-TYPE" "UGT2B10 WILD-TYPE" "UGT2B10 WILD-TYPE" 
       TCGA-55-1592        TCGA-55-1594        TCGA-55-1595        TCGA-55-1596 
"UGT2B10 WILD-TYPE" "UGT2B10 WILD-TYPE" "UGT2B10 WILD-TYPE" "UGT2B10 WILD-TYPE" 
       TCGA-55-5899        TCGA-55-6543        TCGA-55-6642        TCGA-55-6712 
  "UGT2B10 MUTATED" "UGT2B10 WILD-TYPE" "UGT2B10 WILD-TYPE" "UGT2B10 WILD-TYPE" 
       TCGA-64-1676        TCGA-64-1677        TCGA-64-1678        TCGA-64-1680 
"UGT2B10 WILD-TYPE" "UGT2B10 WILD-TYPE" "UGT2B10 WILD-TYPE" "UGT2B10 WILD-TYPE" 
       TCGA-64-5774        TCGA-64-5775        TCGA-64-5778        TCGA-64-5779 
"UGT2B10 WILD-TYPE"   "UGT2B10 MUTATED" "UGT2B10 WILD-TYPE" "UGT2B10 WILD-TYPE" 
       TCGA-64-5781        TCGA-64-5815        TCGA-67-3770        TCGA-67-3771 
"UGT2B10 WILD-TYPE"   "UGT2B10 MUTATED" "UGT2B10 WILD-TYPE" "UGT2B10 WILD-TYPE" 
       TCGA-67-3772        TCGA-67-3773        TCGA-67-3774        TCGA-67-6215 
"UGT2B10 WILD-TYPE" "UGT2B10 WILD-TYPE" "UGT2B10 WILD-TYPE" "UGT2B10 WILD-TYPE" 
       TCGA-67-6216        TCGA-67-6217        TCGA-71-6725        TCGA-73-4658 
"UGT2B10 WILD-TYPE" "UGT2B10 WILD-TYPE" "UGT2B10 WILD-TYPE" "UGT2B10 WILD-TYPE" 
       TCGA-73-4659        TCGA-73-4662        TCGA-73-4666        TCGA-73-4668 
"UGT2B10 WILD-TYPE" "UGT2B10 WILD-TYPE" "UGT2B10 WILD-TYPE" "UGT2B10 WILD-TYPE" 
       TCGA-73-4670        TCGA-73-4675        TCGA-73-4676        TCGA-73-4677 
"UGT2B10 WILD-TYPE" "UGT2B10 WILD-TYPE" "UGT2B10 WILD-TYPE" "UGT2B10 WILD-TYPE" 
       TCGA-91-6828        TCGA-91-6829        TCGA-91-6831        TCGA-91-6835 
"UGT2B10 WILD-TYPE" "UGT2B10 WILD-TYPE" "UGT2B10 WILD-TYPE" "UGT2B10 WILD-TYPE" 
       TCGA-91-6836 
"UGT2B10 WILD-TYPE" 
       TCGA-05-4249        TCGA-05-4250        TCGA-05-4382        TCGA-05-4384 
"UGT2B10 WILD-TYPE" "UGT2B10 WILD-TYPE"   "UGT2B10 MUTATED" "UGT2B10 WILD-TYPE" 
       TCGA-05-4390        TCGA-05-4396        TCGA-05-4397        TCGA-05-4398 
"UGT2B10 WILD-TYPE"   "UGT2B10 MUTATED" "UGT2B10 WILD-TYPE" "UGT2B10 WILD-TYPE" 
       TCGA-05-4402        TCGA-05-4405        TCGA-05-4415        TCGA-05-4417 
"UGT2B10 WILD-TYPE" "UGT2B10 WILD-TYPE" "UGT2B10 WILD-TYPE" "UGT2B10 WILD-TYPE" 
       TCGA-05-4418        TCGA-05-4420        TCGA-05-4424        TCGA-05-4426 
"UGT2B10 WILD-TYPE" "UGT2B10 WILD-TYPE"   "UGT2B10 MUTATED" "UGT2B10 WILD-TYPE" 
       TCGA-05-4427        TCGA-05-4430        TCGA-05-4432        TCGA-05-4433 
"UGT2B10 WILD-TYPE" "UGT2B10 WILD-TYPE"   "UGT2B10 MUTATED" "UGT2B10 WILD-TYPE" 
       TCGA-05-4434        TCGA-05-5420        TCGA-05-5423        TCGA-05-5425 
"UGT2B10 WILD-TYPE" "UGT2B10 WILD-TYPE" "UGT2B10 WILD-TYPE" "UGT2B10 WILD-TYPE" 
       TCGA-05-5429        TCGA-05-5715        TCGA-35-3615        TCGA-35-4122 
"UGT2B10 WILD-TYPE" "UGT2B10 WILD-TYPE" "UGT2B10 WILD-TYPE" "UGT2B10 WILD-TYPE" 
       TCGA-35-4123        TCGA-35-5375        TCGA-38-4625        TCGA-38-4626 
"UGT2B10 WILD-TYPE" "UGT2B10 WILD-TYPE" "UGT2B10 WILD-TYPE" "UGT2B10 WILD-TYPE" 
       TCGA-38-4627        TCGA-38-4628        TCGA-38-4629        TCGA-38-4630 
"UGT2B10 WILD-TYPE" "UGT2B10 WILD-TYPE" "UGT2B10 WILD-TYPE" "UGT2B10 WILD-TYPE" 
       TCGA-38-4631        TCGA-38-4632        TCGA-38-6178        TCGA-44-2655 
"UGT2B10 WILD-TYPE" "UGT2B10 WILD-TYPE" "UGT2B10 WILD-TYPE" "UGT2B10 WILD-TYPE" 
       TCGA-44-2656        TCGA-44-2657        TCGA-44-2659        TCGA-44-2661 
"UGT2B10 WILD-TYPE" "UGT2B10 WILD-TYPE" "UGT2B10 WILD-TYPE" "UGT2B10 WILD-TYPE" 
       TCGA-44-2662        TCGA-44-2665        TCGA-44-2666        TCGA-44-2668 
"UGT2B10 WILD-TYPE" "UGT2B10 WILD-TYPE" "UGT2B10 WILD-TYPE" "UGT2B10 WILD-TYPE" 
       TCGA-44-3396        TCGA-44-3398        TCGA-44-3918        TCGA-44-3919 
  "UGT2B10 MUTATED" "UGT2B10 WILD-TYPE" "UGT2B10 WILD-TYPE" "UGT2B10 WILD-TYPE" 
       TCGA-44-4112        TCGA-44-5643        TCGA-44-5645        TCGA-44-6144 
  "UGT2B10 MUTATED" "UGT2B10 WILD-TYPE" "UGT2B10 WILD-TYPE" "UGT2B10 WILD-TYPE" 
       TCGA-44-6145        TCGA-44-6146        TCGA-44-6147        TCGA-44-6148 
"UGT2B10 WILD-TYPE" "UGT2B10 WILD-TYPE" "UGT2B10 WILD-TYPE" "UGT2B10 WILD-TYPE" 
       TCGA-44-6774        TCGA-44-6775        TCGA-44-6776        TCGA-44-6777 
"UGT2B10 WILD-TYPE" "UGT2B10 WILD-TYPE" "UGT2B10 WILD-TYPE" "UGT2B10 WILD-TYPE" 
       TCGA-44-6778        TCGA-44-6779        TCGA-49-4486        TCGA-49-4487 
"UGT2B10 WILD-TYPE" "UGT2B10 WILD-TYPE" "UGT2B10 WILD-TYPE" "UGT2B10 WILD-TYPE" 
       TCGA-49-4488        TCGA-49-4490        TCGA-49-4494        TCGA-49-4501 
"UGT2B10 WILD-TYPE" "UGT2B10 WILD-TYPE" "UGT2B10 WILD-TYPE" "UGT2B10 WILD-TYPE" 
       TCGA-49-4505        TCGA-49-4506        TCGA-49-4507        TCGA-49-4510 
"UGT2B10 WILD-TYPE" "UGT2B10 WILD-TYPE" "UGT2B10 WILD-TYPE" "UGT2B10 WILD-TYPE" 
       TCGA-49-4512        TCGA-49-4514        TCGA-49-6742        TCGA-49-6743 
"UGT2B10 WILD-TYPE" "UGT2B10 WILD-TYPE" "UGT2B10 WILD-TYPE" "UGT2B10 WILD-TYPE" 
       TCGA-49-6744        TCGA-49-6745        TCGA-50-5044        TCGA-50-5045 
  "UGT2B10 MUTATED" "UGT2B10 WILD-TYPE" "UGT2B10 WILD-TYPE" "UGT2B10 WILD-TYPE" 
       TCGA-50-5049        TCGA-50-5051        TCGA-50-5055        TCGA-50-5066 
"UGT2B10 WILD-TYPE" "UGT2B10 WILD-TYPE" "UGT2B10 WILD-TYPE"   "UGT2B10 MUTATED" 
       TCGA-50-5068        TCGA-50-5072        TCGA-50-5930        TCGA-50-5931 
"UGT2B10 WILD-TYPE" "UGT2B10 WILD-TYPE" "UGT2B10 WILD-TYPE" "UGT2B10 WILD-TYPE" 
       TCGA-50-5932        TCGA-50-5933        TCGA-50-5935        TCGA-50-5936 
"UGT2B10 WILD-TYPE" "UGT2B10 WILD-TYPE" "UGT2B10 WILD-TYPE" "UGT2B10 WILD-TYPE" 
       TCGA-50-5939        TCGA-50-5941        TCGA-50-5942        TCGA-50-5944 
"UGT2B10 WILD-TYPE" "UGT2B10 WILD-TYPE" "UGT2B10 WILD-TYPE" "UGT2B10 WILD-TYPE" 
       TCGA-50-5946        TCGA-50-6590        TCGA-50-6591        TCGA-50-6592 
"UGT2B10 WILD-TYPE" "UGT2B10 WILD-TYPE" "UGT2B10 WILD-TYPE" "UGT2B10 WILD-TYPE" 
       TCGA-50-6593        TCGA-50-6594        TCGA-50-6595        TCGA-50-6597 
"UGT2B10 WILD-TYPE" "UGT2B10 WILD-TYPE" "UGT2B10 WILD-TYPE" "UGT2B10 WILD-TYPE" 
       TCGA-55-1592        TCGA-55-1594        TCGA-55-1595        TCGA-55-1596 
"UGT2B10 WILD-TYPE" "UGT2B10 WILD-TYPE" "UGT2B10 WILD-TYPE" "UGT2B10 WILD-TYPE" 
       TCGA-55-5899        TCGA-55-6543        TCGA-55-6642        TCGA-55-6712 
  "UGT2B10 MUTATED" "UGT2B10 WILD-TYPE" "UGT2B10 WILD-TYPE" "UGT2B10 WILD-TYPE" 
       TCGA-64-1676        TCGA-64-1677        TCGA-64-1678        TCGA-64-1680 
"UGT2B10 WILD-TYPE" "UGT2B10 WILD-TYPE" "UGT2B10 WILD-TYPE" "UGT2B10 WILD-TYPE" 
       TCGA-64-5774        TCGA-64-5775        TCGA-64-5778        TCGA-64-5779 
"UGT2B10 WILD-TYPE"   "UGT2B10 MUTATED" "UGT2B10 WILD-TYPE" "UGT2B10 WILD-TYPE" 
       TCGA-64-5781        TCGA-64-5815        TCGA-67-3770        TCGA-67-3771 
"UGT2B10 WILD-TYPE"   "UGT2B10 MUTATED" "UGT2B10 WILD-TYPE" "UGT2B10 WILD-TYPE" 
       TCGA-67-3772        TCGA-67-3773        TCGA-67-3774        TCGA-67-6215 
"UGT2B10 WILD-TYPE" "UGT2B10 WILD-TYPE" "UGT2B10 WILD-TYPE" "UGT2B10 WILD-TYPE" 
       TCGA-67-6216        TCGA-67-6217        TCGA-71-6725        TCGA-73-4658 
"UGT2B10 WILD-TYPE" "UGT2B10 WILD-TYPE" "UGT2B10 WILD-TYPE" "UGT2B10 WILD-TYPE" 
       TCGA-73-4659        TCGA-73-4662        TCGA-73-4666        TCGA-73-4668 
"UGT2B10 WILD-TYPE" "UGT2B10 WILD-TYPE" "UGT2B10 WILD-TYPE" "UGT2B10 WILD-TYPE" 
       TCGA-73-4670        TCGA-73-4675        TCGA-73-4676        TCGA-73-4677 
"UGT2B10 WILD-TYPE" "UGT2B10 WILD-TYPE" "UGT2B10 WILD-TYPE" "UGT2B10 WILD-TYPE" 
       TCGA-91-6828        TCGA-91-6829        TCGA-91-6831        TCGA-91-6835 
"UGT2B10 WILD-TYPE" "UGT2B10 WILD-TYPE" "UGT2B10 WILD-TYPE" "UGT2B10 WILD-TYPE" 
       TCGA-91-6836 
"UGT2B10 WILD-TYPE" 
[1] "hr=" "1.1"
D145V2, continuous
D145V3, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  UGT2B10 MUTATED      3    8
  UGT2B10 WILD-TYPE   90   71
        clus
vv       UGT2B10 MUTATED UGT2B10 WILD-TYPE
  FEMALE               3                90
  MALE                 8                71
D145V4, continuous
D145V5, multiclass
D145V6, multiclass
    clus
vv   UGT2B10 MUTATED UGT2B10 WILD-TYPE
  T1               1                40
  T2               7               101
  T3               1                13
  T4               2                 6
D145V7, multiclass
       clus
vv      UGT2B10 MUTATED UGT2B10 WILD-TYPE
  N0                  5                90
  N1                  5                32
  N2+N3               1                34
D145V8, multiclass
    clus
vv   UGT2B10 MUTATED UGT2B10 WILD-TYPE
  M0              10               127
  M1               0                 9
  MX               1                21
D145V9, multiclass
     clus
vv    UGT2B10 MUTATED UGT2B10 WILD-TYPE
  I                 4                84
  II                4                29
  III               3                36
  IV                0                 9
D145V10, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  UGT2B10 MUTATED      0   11
  UGT2B10 WILD-TYPE   16  145
     clus
vv    UGT2B10 MUTATED UGT2B10 WILD-TYPE
  NO                0                16
  YES              11               145
D145V11, continuous
D145V12, continuous
D145V13, multiclass
                                             clus
vv                                            UGT2B10 MUTATED UGT2B10 WILD-TYPE
  CURRENT REFORMED SMOKER FOR < OR = 15 YEARS               3                59
  CURRENT REFORMED SMOKER FOR > 15 YEARS                    3                43
  CURRENT SMOKER                                            4                24
  LIFELONG NON-SMOKER                                       1                23
D145V14, continuous

Clustering(146) Variable = PRIM2 MUTATION ANALYSIS
D146V1, survival
                 sevent
clus2              0  1
  PRIM2 MUTATED    6  4
  PRIM2 WILD-TYPE 93 46
  PRIM2 MUTATED PRIM2 WILD-TYPE 
             10             139 
  PRIM2 MUTATED PRIM2 WILD-TYPE 
              4              46 
$`PRIM2 MUTATED`
TCGA-05-4382 TCGA-05-4397 TCGA-05-4415 TCGA-05-4420 TCGA-05-4427 TCGA-44-6144 
       19.92        24.03         2.96        29.95        26.01         0.30 
TCGA-50-5072 TCGA-50-6593 TCGA-55-1596 TCGA-64-5775 
        8.05        11.05        45.17         0.10 

$`PRIM2 WILD-TYPE`
TCGA-05-4249 TCGA-05-4250 TCGA-05-4384 TCGA-05-4390 TCGA-05-4396 TCGA-05-4398 
       38.07         3.98        14.01        37.02         9.96        47.05 
TCGA-05-4402 TCGA-05-4405 TCGA-05-4417 TCGA-05-4418 TCGA-05-4424 TCGA-05-4426 
        8.02        20.05        14.93         8.98        30.02        26.01 
TCGA-05-4430 TCGA-05-4432 TCGA-05-4433 TCGA-05-4434 TCGA-05-5420 TCGA-05-5423 
       25.02        25.02        24.00        15.02         1.02         4.96 
TCGA-05-5425 TCGA-05-5429 TCGA-05-5715 TCGA-35-3615 TCGA-35-4122 TCGA-35-4123 
        2.96         0.99         2.04         0.46         7.36         5.95 
TCGA-35-5375 TCGA-38-4625 TCGA-38-4626 TCGA-38-4627 TCGA-38-4628 TCGA-38-4629 
        8.68        47.61        85.32        37.71        49.02        28.37 
TCGA-38-4630 TCGA-38-4631 TCGA-38-4632 TCGA-38-6178 TCGA-44-2655 TCGA-44-2656 
       35.28        11.64        44.61         5.19        18.87        19.10 
TCGA-44-2657 TCGA-44-2659 TCGA-44-2661 TCGA-44-2662 TCGA-44-2665 TCGA-44-2666 
       13.15        17.39         3.39        15.78        13.15         3.19 
TCGA-44-2668 TCGA-44-3396 TCGA-44-3398 TCGA-44-3918 TCGA-44-3919 TCGA-44-4112 
        8.09        10.22         8.32         6.44         6.21         4.60 
TCGA-44-5643 TCGA-44-5645 TCGA-44-6145 TCGA-44-6146 TCGA-44-6147 TCGA-44-6148 
        3.48         6.84         3.35         9.93         7.76         3.12 
TCGA-44-6774 TCGA-44-6775 TCGA-44-6776 TCGA-44-6777 TCGA-44-6778 TCGA-44-6779 
        5.42         2.70        63.72        32.45        36.49        16.41 
TCGA-49-4486 TCGA-49-4487 TCGA-49-4488 TCGA-49-4490 TCGA-49-4494 TCGA-49-4501 
       76.21        28.11        28.57        12.66        35.54        46.72 
TCGA-49-4505 TCGA-49-4506 TCGA-49-4507 TCGA-49-4510 TCGA-49-4512 TCGA-49-4514 
       14.07        32.84         8.81        29.46        29.75        43.20 
TCGA-49-6742 TCGA-49-6743 TCGA-49-6744 TCGA-49-6745 TCGA-50-5044 TCGA-50-5045 
       15.02        12.13        12.99         4.93        20.48        71.47 
TCGA-50-5049 TCGA-50-5051 TCGA-50-5055 TCGA-50-5066 TCGA-50-5068 TCGA-50-5930 
       48.82        14.96        25.81         9.76        49.28         9.27 
TCGA-50-5931 TCGA-50-5932 TCGA-50-5933 TCGA-50-5935 TCGA-50-5936 TCGA-50-5939 
        8.78        35.87        77.88        21.47         8.45        15.12 
TCGA-50-5941 TCGA-50-5942 TCGA-50-5944 TCGA-50-5946 TCGA-50-6590 TCGA-50-6591 
        9.37         4.44        12.26        11.47        42.31         3.88 
TCGA-50-6592 TCGA-50-6594 TCGA-50-6595 TCGA-50-6597 TCGA-55-1592 TCGA-55-1594 
       25.51        12.16         6.21        33.37        23.05        38.73 
TCGA-55-1595 TCGA-55-5899 TCGA-55-6543 TCGA-55-6642 TCGA-55-6712 TCGA-64-1676 
       48.62         2.86         0.07        32.61         0.79        56.81 
TCGA-64-1677 TCGA-64-1678 TCGA-64-1680 TCGA-64-5774 TCGA-64-5778 TCGA-64-5779 
       20.65        39.09        37.02        83.84        30.44        16.67 
TCGA-64-5781 TCGA-64-5815 TCGA-67-3770 TCGA-67-3771 TCGA-67-3772 TCGA-67-3773 
       39.52         7.33         0.99         1.97         0.59         2.04 
TCGA-67-3774 TCGA-67-6215 TCGA-67-6216 TCGA-67-6217 TCGA-71-6725 TCGA-73-4658 
        0.59         0.89         0.69        13.87         2.01        52.57 
TCGA-73-4659 TCGA-73-4662 TCGA-73-4666 TCGA-73-4668 TCGA-73-4670 TCGA-73-4675 
       23.38        29.95        20.28        15.35         0.46         1.32 
TCGA-73-4676 TCGA-73-4677 TCGA-91-6828 TCGA-91-6829 TCGA-91-6831 TCGA-91-6835 
        4.01         1.25         1.22        41.33         1.28         1.15 
TCGA-91-6836 
        0.36 

  PRIM2 MUTATED PRIM2 WILD-TYPE 
           0.10            0.07 
  PRIM2 MUTATED PRIM2 WILD-TYPE 
          45.17           85.32 
  PRIM2 MUTATED PRIM2 WILD-TYPE 
         15.485          13.870 
[1] "0.1 - 45.2 (15.5)" "0.1 - 85.3 (13.9)"
     TCGA-05-4249      TCGA-05-4250      TCGA-05-4382      TCGA-05-4384 
"PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE"   "PRIM2 MUTATED" "PRIM2 WILD-TYPE" 
     TCGA-05-4390      TCGA-05-4396      TCGA-05-4397      TCGA-05-4398 
"PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE"   "PRIM2 MUTATED" "PRIM2 WILD-TYPE" 
     TCGA-05-4402      TCGA-05-4405      TCGA-05-4415      TCGA-05-4417 
"PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE"   "PRIM2 MUTATED" "PRIM2 WILD-TYPE" 
     TCGA-05-4418      TCGA-05-4420      TCGA-05-4424      TCGA-05-4426 
"PRIM2 WILD-TYPE"   "PRIM2 MUTATED" "PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" 
     TCGA-05-4427      TCGA-05-4430      TCGA-05-4432      TCGA-05-4433 
  "PRIM2 MUTATED" "PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" 
     TCGA-05-4434      TCGA-05-5420      TCGA-05-5423      TCGA-05-5425 
"PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" 
     TCGA-05-5429      TCGA-05-5715      TCGA-35-3615      TCGA-35-4122 
"PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" 
     TCGA-35-4123      TCGA-35-5375      TCGA-38-4625      TCGA-38-4626 
"PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" 
     TCGA-38-4627      TCGA-38-4628      TCGA-38-4629      TCGA-38-4630 
"PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" 
     TCGA-38-4631      TCGA-38-4632      TCGA-38-6178      TCGA-44-2655 
"PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" 
     TCGA-44-2656      TCGA-44-2657      TCGA-44-2659      TCGA-44-2661 
"PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" 
     TCGA-44-2662      TCGA-44-2665      TCGA-44-2666      TCGA-44-2668 
"PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" 
     TCGA-44-3396      TCGA-44-3398      TCGA-44-3918      TCGA-44-3919 
"PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" 
     TCGA-44-4112      TCGA-44-5643      TCGA-44-5645      TCGA-44-6144 
"PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE"   "PRIM2 MUTATED" 
     TCGA-44-6145      TCGA-44-6146      TCGA-44-6147      TCGA-44-6148 
"PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" 
     TCGA-44-6774      TCGA-44-6775      TCGA-44-6776      TCGA-44-6777 
"PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" 
     TCGA-44-6778      TCGA-44-6779      TCGA-49-4486      TCGA-49-4487 
"PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" 
     TCGA-49-4488      TCGA-49-4490      TCGA-49-4494      TCGA-49-4501 
"PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" 
     TCGA-49-4505      TCGA-49-4506      TCGA-49-4507      TCGA-49-4510 
"PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" 
     TCGA-49-4512      TCGA-49-4514      TCGA-49-6742      TCGA-49-6743 
"PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" 
     TCGA-49-6744      TCGA-49-6745      TCGA-50-5044      TCGA-50-5045 
"PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" 
     TCGA-50-5049      TCGA-50-5051      TCGA-50-5055      TCGA-50-5066 
"PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" 
     TCGA-50-5068      TCGA-50-5072      TCGA-50-5930      TCGA-50-5931 
"PRIM2 WILD-TYPE"   "PRIM2 MUTATED" "PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" 
     TCGA-50-5932      TCGA-50-5933      TCGA-50-5935      TCGA-50-5936 
"PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" 
     TCGA-50-5939      TCGA-50-5941      TCGA-50-5942      TCGA-50-5944 
"PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" 
     TCGA-50-5946      TCGA-50-6590      TCGA-50-6591      TCGA-50-6592 
"PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" 
     TCGA-50-6593      TCGA-50-6594      TCGA-50-6595      TCGA-50-6597 
  "PRIM2 MUTATED" "PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" 
     TCGA-55-1592      TCGA-55-1594      TCGA-55-1595      TCGA-55-1596 
"PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE"   "PRIM2 MUTATED" 
     TCGA-55-5899      TCGA-55-6543      TCGA-55-6642      TCGA-55-6712 
"PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" 
     TCGA-64-1676      TCGA-64-1677      TCGA-64-1678      TCGA-64-1680 
"PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" 
     TCGA-64-5774      TCGA-64-5775      TCGA-64-5778      TCGA-64-5779 
"PRIM2 WILD-TYPE"   "PRIM2 MUTATED" "PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" 
     TCGA-64-5781      TCGA-64-5815      TCGA-67-3770      TCGA-67-3771 
"PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" 
     TCGA-67-3772      TCGA-67-3773      TCGA-67-3774      TCGA-67-6215 
"PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" 
     TCGA-67-6216      TCGA-67-6217      TCGA-71-6725      TCGA-73-4658 
"PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" 
     TCGA-73-4659      TCGA-73-4662      TCGA-73-4666      TCGA-73-4668 
"PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" 
     TCGA-73-4670      TCGA-73-4675      TCGA-73-4676      TCGA-73-4677 
"PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" 
     TCGA-91-6828      TCGA-91-6829      TCGA-91-6831      TCGA-91-6835 
"PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" 
     TCGA-91-6836 
"PRIM2 WILD-TYPE" 
     TCGA-05-4249      TCGA-05-4250      TCGA-05-4382      TCGA-05-4384 
"PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE"   "PRIM2 MUTATED" "PRIM2 WILD-TYPE" 
     TCGA-05-4390      TCGA-05-4396      TCGA-05-4397      TCGA-05-4398 
"PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE"   "PRIM2 MUTATED" "PRIM2 WILD-TYPE" 
     TCGA-05-4402      TCGA-05-4405      TCGA-05-4415      TCGA-05-4417 
"PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE"   "PRIM2 MUTATED" "PRIM2 WILD-TYPE" 
     TCGA-05-4418      TCGA-05-4420      TCGA-05-4424      TCGA-05-4426 
"PRIM2 WILD-TYPE"   "PRIM2 MUTATED" "PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" 
     TCGA-05-4427      TCGA-05-4430      TCGA-05-4432      TCGA-05-4433 
  "PRIM2 MUTATED" "PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" 
     TCGA-05-4434      TCGA-05-5420      TCGA-05-5423      TCGA-05-5425 
"PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" 
     TCGA-05-5429      TCGA-05-5715      TCGA-35-3615      TCGA-35-4122 
"PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" 
     TCGA-35-4123      TCGA-35-5375      TCGA-38-4625      TCGA-38-4626 
"PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" 
     TCGA-38-4627      TCGA-38-4628      TCGA-38-4629      TCGA-38-4630 
"PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" 
     TCGA-38-4631      TCGA-38-4632      TCGA-38-6178      TCGA-44-2655 
"PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" 
     TCGA-44-2656      TCGA-44-2657      TCGA-44-2659      TCGA-44-2661 
"PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" 
     TCGA-44-2662      TCGA-44-2665      TCGA-44-2666      TCGA-44-2668 
"PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" 
     TCGA-44-3396      TCGA-44-3398      TCGA-44-3918      TCGA-44-3919 
"PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" 
     TCGA-44-4112      TCGA-44-5643      TCGA-44-5645      TCGA-44-6144 
"PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE"   "PRIM2 MUTATED" 
     TCGA-44-6145      TCGA-44-6146      TCGA-44-6147      TCGA-44-6148 
"PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" 
     TCGA-44-6774      TCGA-44-6775      TCGA-44-6776      TCGA-44-6777 
"PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" 
     TCGA-44-6778      TCGA-44-6779      TCGA-49-4486      TCGA-49-4487 
"PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" 
     TCGA-49-4488      TCGA-49-4490      TCGA-49-4494      TCGA-49-4501 
"PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" 
     TCGA-49-4505      TCGA-49-4506      TCGA-49-4507      TCGA-49-4510 
"PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" 
     TCGA-49-4512      TCGA-49-4514      TCGA-49-6742      TCGA-49-6743 
"PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" 
     TCGA-49-6744      TCGA-49-6745      TCGA-50-5044      TCGA-50-5045 
"PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" 
     TCGA-50-5049      TCGA-50-5051      TCGA-50-5055      TCGA-50-5066 
"PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" 
     TCGA-50-5068      TCGA-50-5072      TCGA-50-5930      TCGA-50-5931 
"PRIM2 WILD-TYPE"   "PRIM2 MUTATED" "PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" 
     TCGA-50-5932      TCGA-50-5933      TCGA-50-5935      TCGA-50-5936 
"PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" 
     TCGA-50-5939      TCGA-50-5941      TCGA-50-5942      TCGA-50-5944 
"PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" 
     TCGA-50-5946      TCGA-50-6590      TCGA-50-6591      TCGA-50-6592 
"PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" 
     TCGA-50-6593      TCGA-50-6594      TCGA-50-6595      TCGA-50-6597 
  "PRIM2 MUTATED" "PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" 
     TCGA-55-1592      TCGA-55-1594      TCGA-55-1595      TCGA-55-1596 
"PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE"   "PRIM2 MUTATED" 
     TCGA-55-5899      TCGA-55-6543      TCGA-55-6642      TCGA-55-6712 
"PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" 
     TCGA-64-1676      TCGA-64-1677      TCGA-64-1678      TCGA-64-1680 
"PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" 
     TCGA-64-5774      TCGA-64-5775      TCGA-64-5778      TCGA-64-5779 
"PRIM2 WILD-TYPE"   "PRIM2 MUTATED" "PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" 
     TCGA-64-5781      TCGA-64-5815      TCGA-67-3770      TCGA-67-3771 
"PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" 
     TCGA-67-3772      TCGA-67-3773      TCGA-67-3774      TCGA-67-6215 
"PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" 
     TCGA-67-6216      TCGA-67-6217      TCGA-71-6725      TCGA-73-4658 
"PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" 
     TCGA-73-4659      TCGA-73-4662      TCGA-73-4666      TCGA-73-4668 
"PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" 
     TCGA-73-4670      TCGA-73-4675      TCGA-73-4676      TCGA-73-4677 
"PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" 
     TCGA-91-6828      TCGA-91-6829      TCGA-91-6831      TCGA-91-6835 
"PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" 
     TCGA-91-6836 
"PRIM2 WILD-TYPE" 
     TCGA-05-4249      TCGA-05-4250      TCGA-05-4382      TCGA-05-4384 
"PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE"   "PRIM2 MUTATED" "PRIM2 WILD-TYPE" 
     TCGA-05-4390      TCGA-05-4396      TCGA-05-4397      TCGA-05-4398 
"PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE"   "PRIM2 MUTATED" "PRIM2 WILD-TYPE" 
     TCGA-05-4402      TCGA-05-4405      TCGA-05-4415      TCGA-05-4417 
"PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE"   "PRIM2 MUTATED" "PRIM2 WILD-TYPE" 
     TCGA-05-4418      TCGA-05-4420      TCGA-05-4424      TCGA-05-4426 
"PRIM2 WILD-TYPE"   "PRIM2 MUTATED" "PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" 
     TCGA-05-4427      TCGA-05-4430      TCGA-05-4432      TCGA-05-4433 
  "PRIM2 MUTATED" "PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" 
     TCGA-05-4434      TCGA-05-5420      TCGA-05-5423      TCGA-05-5425 
"PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" 
     TCGA-05-5429      TCGA-05-5715      TCGA-35-3615      TCGA-35-4122 
"PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" 
     TCGA-35-4123      TCGA-35-5375      TCGA-38-4625      TCGA-38-4626 
"PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" 
     TCGA-38-4627      TCGA-38-4628      TCGA-38-4629      TCGA-38-4630 
"PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" 
     TCGA-38-4631      TCGA-38-4632      TCGA-38-6178      TCGA-44-2655 
"PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" 
     TCGA-44-2656      TCGA-44-2657      TCGA-44-2659      TCGA-44-2661 
"PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" 
     TCGA-44-2662      TCGA-44-2665      TCGA-44-2666      TCGA-44-2668 
"PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" 
     TCGA-44-3396      TCGA-44-3398      TCGA-44-3918      TCGA-44-3919 
"PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" 
     TCGA-44-4112      TCGA-44-5643      TCGA-44-5645      TCGA-44-6144 
"PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE"   "PRIM2 MUTATED" 
     TCGA-44-6145      TCGA-44-6146      TCGA-44-6147      TCGA-44-6148 
"PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" 
     TCGA-44-6774      TCGA-44-6775      TCGA-44-6776      TCGA-44-6777 
"PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" 
     TCGA-44-6778      TCGA-44-6779      TCGA-49-4486      TCGA-49-4487 
"PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" 
     TCGA-49-4488      TCGA-49-4490      TCGA-49-4494      TCGA-49-4501 
"PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" 
     TCGA-49-4505      TCGA-49-4506      TCGA-49-4507      TCGA-49-4510 
"PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" 
     TCGA-49-4512      TCGA-49-4514      TCGA-49-6742      TCGA-49-6743 
"PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" 
     TCGA-49-6744      TCGA-49-6745      TCGA-50-5044      TCGA-50-5045 
"PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" 
     TCGA-50-5049      TCGA-50-5051      TCGA-50-5055      TCGA-50-5066 
"PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" 
     TCGA-50-5068      TCGA-50-5072      TCGA-50-5930      TCGA-50-5931 
"PRIM2 WILD-TYPE"   "PRIM2 MUTATED" "PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" 
     TCGA-50-5932      TCGA-50-5933      TCGA-50-5935      TCGA-50-5936 
"PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" 
     TCGA-50-5939      TCGA-50-5941      TCGA-50-5942      TCGA-50-5944 
"PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" 
     TCGA-50-5946      TCGA-50-6590      TCGA-50-6591      TCGA-50-6592 
"PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" 
     TCGA-50-6593      TCGA-50-6594      TCGA-50-6595      TCGA-50-6597 
  "PRIM2 MUTATED" "PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" 
     TCGA-55-1592      TCGA-55-1594      TCGA-55-1595      TCGA-55-1596 
"PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE"   "PRIM2 MUTATED" 
     TCGA-55-5899      TCGA-55-6543      TCGA-55-6642      TCGA-55-6712 
"PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" 
     TCGA-64-1676      TCGA-64-1677      TCGA-64-1678      TCGA-64-1680 
"PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" 
     TCGA-64-5774      TCGA-64-5775      TCGA-64-5778      TCGA-64-5779 
"PRIM2 WILD-TYPE"   "PRIM2 MUTATED" "PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" 
     TCGA-64-5781      TCGA-64-5815      TCGA-67-3770      TCGA-67-3771 
"PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" 
     TCGA-67-3772      TCGA-67-3773      TCGA-67-3774      TCGA-67-6215 
"PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" 
     TCGA-67-6216      TCGA-67-6217      TCGA-71-6725      TCGA-73-4658 
"PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" 
     TCGA-73-4659      TCGA-73-4662      TCGA-73-4666      TCGA-73-4668 
"PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" 
     TCGA-73-4670      TCGA-73-4675      TCGA-73-4676      TCGA-73-4677 
"PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" 
     TCGA-91-6828      TCGA-91-6829      TCGA-91-6831      TCGA-91-6835 
"PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" 
     TCGA-91-6836 
"PRIM2 WILD-TYPE" 
[1] "hr=" "1.6"
D146V2, continuous
D146V3, binary
[1] "tbl2"
                 cls
clus              [,1] [,2]
  PRIM2 MUTATED      2    8
  PRIM2 WILD-TYPE   91   71
        clus
vv       PRIM2 MUTATED PRIM2 WILD-TYPE
  FEMALE             2              91
  MALE               8              71
D146V4, continuous
D146V5, multiclass
D146V6, multiclass
    clus
vv   PRIM2 MUTATED PRIM2 WILD-TYPE
  T1             2              39
  T2             6             102
  T3             0              14
  T4             2               6
D146V7, multiclass
       clus
vv      PRIM2 MUTATED PRIM2 WILD-TYPE
  N0                4              91
  N1                3              34
  N2+N3             3              32
D146V8, multiclass
    clus
vv   PRIM2 MUTATED PRIM2 WILD-TYPE
  M0            10             127
  M1             0               9
  MX             0              22
D146V9, multiclass
     clus
vv    PRIM2 MUTATED PRIM2 WILD-TYPE
  I               3              85
  II              3              30
  III             4              35
  IV              0               9
D146V10, binary
[1] "tbl2"
                 cls
clus              [,1] [,2]
  PRIM2 MUTATED      1    9
  PRIM2 WILD-TYPE   15  147
     clus
vv    PRIM2 MUTATED PRIM2 WILD-TYPE
  NO              1              15
  YES             9             147
D146V11, continuous
D146V12, continuous
D146V13, multiclass
                                             clus
vv                                            PRIM2 MUTATED PRIM2 WILD-TYPE
  CURRENT REFORMED SMOKER FOR < OR = 15 YEARS             4              58
  CURRENT REFORMED SMOKER FOR > 15 YEARS                  1              45
  CURRENT SMOKER                                          5              23
  LIFELONG NON-SMOKER                                     0              24
D146V14, continuous

Clustering(147) Variable = TBX3 MUTATION ANALYSIS
D147V1, survival
                sevent
clus2             0  1
  TBX3 MUTATED    5  2
  TBX3 WILD-TYPE 94 48
  TBX3 MUTATED TBX3 WILD-TYPE 
             7            142 
  TBX3 MUTATED TBX3 WILD-TYPE 
             2             48 
$`TBX3 MUTATED`
TCGA-05-4250 TCGA-05-4427 TCGA-38-4629 TCGA-44-2656 TCGA-50-5049 TCGA-73-4662 
        3.98        26.01        28.37        19.10        48.82        29.95 
TCGA-73-4666 
       20.28 

$`TBX3 WILD-TYPE`
TCGA-05-4249 TCGA-05-4382 TCGA-05-4384 TCGA-05-4390 TCGA-05-4396 TCGA-05-4397 
       38.07        19.92        14.01        37.02         9.96        24.03 
TCGA-05-4398 TCGA-05-4402 TCGA-05-4405 TCGA-05-4415 TCGA-05-4417 TCGA-05-4418 
       47.05         8.02        20.05         2.96        14.93         8.98 
TCGA-05-4420 TCGA-05-4424 TCGA-05-4426 TCGA-05-4430 TCGA-05-4432 TCGA-05-4433 
       29.95        30.02        26.01        25.02        25.02        24.00 
TCGA-05-4434 TCGA-05-5420 TCGA-05-5423 TCGA-05-5425 TCGA-05-5429 TCGA-05-5715 
       15.02         1.02         4.96         2.96         0.99         2.04 
TCGA-35-3615 TCGA-35-4122 TCGA-35-4123 TCGA-35-5375 TCGA-38-4625 TCGA-38-4626 
        0.46         7.36         5.95         8.68        47.61        85.32 
TCGA-38-4627 TCGA-38-4628 TCGA-38-4630 TCGA-38-4631 TCGA-38-4632 TCGA-38-6178 
       37.71        49.02        35.28        11.64        44.61         5.19 
TCGA-44-2655 TCGA-44-2657 TCGA-44-2659 TCGA-44-2661 TCGA-44-2662 TCGA-44-2665 
       18.87        13.15        17.39         3.39        15.78        13.15 
TCGA-44-2666 TCGA-44-2668 TCGA-44-3396 TCGA-44-3398 TCGA-44-3918 TCGA-44-3919 
        3.19         8.09        10.22         8.32         6.44         6.21 
TCGA-44-4112 TCGA-44-5643 TCGA-44-5645 TCGA-44-6144 TCGA-44-6145 TCGA-44-6146 
        4.60         3.48         6.84         0.30         3.35         9.93 
TCGA-44-6147 TCGA-44-6148 TCGA-44-6774 TCGA-44-6775 TCGA-44-6776 TCGA-44-6777 
        7.76         3.12         5.42         2.70        63.72        32.45 
TCGA-44-6778 TCGA-44-6779 TCGA-49-4486 TCGA-49-4487 TCGA-49-4488 TCGA-49-4490 
       36.49        16.41        76.21        28.11        28.57        12.66 
TCGA-49-4494 TCGA-49-4501 TCGA-49-4505 TCGA-49-4506 TCGA-49-4507 TCGA-49-4510 
       35.54        46.72        14.07        32.84         8.81        29.46 
TCGA-49-4512 TCGA-49-4514 TCGA-49-6742 TCGA-49-6743 TCGA-49-6744 TCGA-49-6745 
       29.75        43.20        15.02        12.13        12.99         4.93 
TCGA-50-5044 TCGA-50-5045 TCGA-50-5051 TCGA-50-5055 TCGA-50-5066 TCGA-50-5068 
       20.48        71.47        14.96        25.81         9.76        49.28 
TCGA-50-5072 TCGA-50-5930 TCGA-50-5931 TCGA-50-5932 TCGA-50-5933 TCGA-50-5935 
        8.05         9.27         8.78        35.87        77.88        21.47 
TCGA-50-5936 TCGA-50-5939 TCGA-50-5941 TCGA-50-5942 TCGA-50-5944 TCGA-50-5946 
        8.45        15.12         9.37         4.44        12.26        11.47 
TCGA-50-6590 TCGA-50-6591 TCGA-50-6592 TCGA-50-6593 TCGA-50-6594 TCGA-50-6595 
       42.31         3.88        25.51        11.05        12.16         6.21 
TCGA-50-6597 TCGA-55-1592 TCGA-55-1594 TCGA-55-1595 TCGA-55-1596 TCGA-55-5899 
       33.37        23.05        38.73        48.62        45.17         2.86 
TCGA-55-6543 TCGA-55-6642 TCGA-55-6712 TCGA-64-1676 TCGA-64-1677 TCGA-64-1678 
        0.07        32.61         0.79        56.81        20.65        39.09 
TCGA-64-1680 TCGA-64-5774 TCGA-64-5775 TCGA-64-5778 TCGA-64-5779 TCGA-64-5781 
       37.02        83.84         0.10        30.44        16.67        39.52 
TCGA-64-5815 TCGA-67-3770 TCGA-67-3771 TCGA-67-3772 TCGA-67-3773 TCGA-67-3774 
        7.33         0.99         1.97         0.59         2.04         0.59 
TCGA-67-6215 TCGA-67-6216 TCGA-67-6217 TCGA-71-6725 TCGA-73-4658 TCGA-73-4659 
        0.89         0.69        13.87         2.01        52.57        23.38 
TCGA-73-4668 TCGA-73-4670 TCGA-73-4675 TCGA-73-4676 TCGA-73-4677 TCGA-91-6828 
       15.35         0.46         1.32         4.01         1.25         1.22 
TCGA-91-6829 TCGA-91-6831 TCGA-91-6835 TCGA-91-6836 
       41.33         1.28         1.15         0.36 

  TBX3 MUTATED TBX3 WILD-TYPE 
          3.98           0.07 
  TBX3 MUTATED TBX3 WILD-TYPE 
         48.82          85.32 
  TBX3 MUTATED TBX3 WILD-TYPE 
         26.01          13.07 
[1] "4.0 - 48.8 (26.0)" "0.1 - 85.3 (13.1)"
    TCGA-05-4249     TCGA-05-4250     TCGA-05-4382     TCGA-05-4384 
"TBX3 WILD-TYPE"   "TBX3 MUTATED" "TBX3 WILD-TYPE" "TBX3 WILD-TYPE" 
    TCGA-05-4390     TCGA-05-4396     TCGA-05-4397     TCGA-05-4398 
"TBX3 WILD-TYPE" "TBX3 WILD-TYPE" "TBX3 WILD-TYPE" "TBX3 WILD-TYPE" 
    TCGA-05-4402     TCGA-05-4405     TCGA-05-4415     TCGA-05-4417 
"TBX3 WILD-TYPE" "TBX3 WILD-TYPE" "TBX3 WILD-TYPE" "TBX3 WILD-TYPE" 
    TCGA-05-4418     TCGA-05-4420     TCGA-05-4424     TCGA-05-4426 
"TBX3 WILD-TYPE" "TBX3 WILD-TYPE" "TBX3 WILD-TYPE" "TBX3 WILD-TYPE" 
    TCGA-05-4427     TCGA-05-4430     TCGA-05-4432     TCGA-05-4433 
  "TBX3 MUTATED" "TBX3 WILD-TYPE" "TBX3 WILD-TYPE" "TBX3 WILD-TYPE" 
    TCGA-05-4434     TCGA-05-5420     TCGA-05-5423     TCGA-05-5425 
"TBX3 WILD-TYPE" "TBX3 WILD-TYPE" "TBX3 WILD-TYPE" "TBX3 WILD-TYPE" 
    TCGA-05-5429     TCGA-05-5715     TCGA-35-3615     TCGA-35-4122 
"TBX3 WILD-TYPE" "TBX3 WILD-TYPE" "TBX3 WILD-TYPE" "TBX3 WILD-TYPE" 
    TCGA-35-4123     TCGA-35-5375     TCGA-38-4625     TCGA-38-4626 
"TBX3 WILD-TYPE" "TBX3 WILD-TYPE" "TBX3 WILD-TYPE" "TBX3 WILD-TYPE" 
    TCGA-38-4627     TCGA-38-4628     TCGA-38-4629     TCGA-38-4630 
"TBX3 WILD-TYPE" "TBX3 WILD-TYPE"   "TBX3 MUTATED" "TBX3 WILD-TYPE" 
    TCGA-38-4631     TCGA-38-4632     TCGA-38-6178     TCGA-44-2655 
"TBX3 WILD-TYPE" "TBX3 WILD-TYPE" "TBX3 WILD-TYPE" "TBX3 WILD-TYPE" 
    TCGA-44-2656     TCGA-44-2657     TCGA-44-2659     TCGA-44-2661 
  "TBX3 MUTATED" "TBX3 WILD-TYPE" "TBX3 WILD-TYPE" "TBX3 WILD-TYPE" 
    TCGA-44-2662     TCGA-44-2665     TCGA-44-2666     TCGA-44-2668 
"TBX3 WILD-TYPE" "TBX3 WILD-TYPE" "TBX3 WILD-TYPE" "TBX3 WILD-TYPE" 
    TCGA-44-3396     TCGA-44-3398     TCGA-44-3918     TCGA-44-3919 
"TBX3 WILD-TYPE" "TBX3 WILD-TYPE" "TBX3 WILD-TYPE" "TBX3 WILD-TYPE" 
    TCGA-44-4112     TCGA-44-5643     TCGA-44-5645     TCGA-44-6144 
"TBX3 WILD-TYPE" "TBX3 WILD-TYPE" "TBX3 WILD-TYPE" "TBX3 WILD-TYPE" 
    TCGA-44-6145     TCGA-44-6146     TCGA-44-6147     TCGA-44-6148 
"TBX3 WILD-TYPE" "TBX3 WILD-TYPE" "TBX3 WILD-TYPE" "TBX3 WILD-TYPE" 
    TCGA-44-6774     TCGA-44-6775     TCGA-44-6776     TCGA-44-6777 
"TBX3 WILD-TYPE" "TBX3 WILD-TYPE" "TBX3 WILD-TYPE" "TBX3 WILD-TYPE" 
    TCGA-44-6778     TCGA-44-6779     TCGA-49-4486     TCGA-49-4487 
"TBX3 WILD-TYPE" "TBX3 WILD-TYPE" "TBX3 WILD-TYPE" "TBX3 WILD-TYPE" 
    TCGA-49-4488     TCGA-49-4490     TCGA-49-4494     TCGA-49-4501 
"TBX3 WILD-TYPE" "TBX3 WILD-TYPE" "TBX3 WILD-TYPE" "TBX3 WILD-TYPE" 
    TCGA-49-4505     TCGA-49-4506     TCGA-49-4507     TCGA-49-4510 
"TBX3 WILD-TYPE" "TBX3 WILD-TYPE" "TBX3 WILD-TYPE" "TBX3 WILD-TYPE" 
    TCGA-49-4512     TCGA-49-4514     TCGA-49-6742     TCGA-49-6743 
"TBX3 WILD-TYPE" "TBX3 WILD-TYPE" "TBX3 WILD-TYPE" "TBX3 WILD-TYPE" 
    TCGA-49-6744     TCGA-49-6745     TCGA-50-5044     TCGA-50-5045 
"TBX3 WILD-TYPE" "TBX3 WILD-TYPE" "TBX3 WILD-TYPE" "TBX3 WILD-TYPE" 
    TCGA-50-5049     TCGA-50-5051     TCGA-50-5055     TCGA-50-5066 
  "TBX3 MUTATED" "TBX3 WILD-TYPE" "TBX3 WILD-TYPE" "TBX3 WILD-TYPE" 
    TCGA-50-5068     TCGA-50-5072     TCGA-50-5930     TCGA-50-5931 
"TBX3 WILD-TYPE" "TBX3 WILD-TYPE" "TBX3 WILD-TYPE" "TBX3 WILD-TYPE" 
    TCGA-50-5932     TCGA-50-5933     TCGA-50-5935     TCGA-50-5936 
"TBX3 WILD-TYPE" "TBX3 WILD-TYPE" "TBX3 WILD-TYPE" "TBX3 WILD-TYPE" 
    TCGA-50-5939     TCGA-50-5941     TCGA-50-5942     TCGA-50-5944 
"TBX3 WILD-TYPE" "TBX3 WILD-TYPE" "TBX3 WILD-TYPE" "TBX3 WILD-TYPE" 
    TCGA-50-5946     TCGA-50-6590     TCGA-50-6591     TCGA-50-6592 
"TBX3 WILD-TYPE" "TBX3 WILD-TYPE" "TBX3 WILD-TYPE" "TBX3 WILD-TYPE" 
    TCGA-50-6593     TCGA-50-6594     TCGA-50-6595     TCGA-50-6597 
"TBX3 WILD-TYPE" "TBX3 WILD-TYPE" "TBX3 WILD-TYPE" "TBX3 WILD-TYPE" 
    TCGA-55-1592     TCGA-55-1594     TCGA-55-1595     TCGA-55-1596 
"TBX3 WILD-TYPE" "TBX3 WILD-TYPE" "TBX3 WILD-TYPE" "TBX3 WILD-TYPE" 
    TCGA-55-5899     TCGA-55-6543     TCGA-55-6642     TCGA-55-6712 
"TBX3 WILD-TYPE" "TBX3 WILD-TYPE" "TBX3 WILD-TYPE" "TBX3 WILD-TYPE" 
    TCGA-64-1676     TCGA-64-1677     TCGA-64-1678     TCGA-64-1680 
"TBX3 WILD-TYPE" "TBX3 WILD-TYPE" "TBX3 WILD-TYPE" "TBX3 WILD-TYPE" 
    TCGA-64-5774     TCGA-64-5775     TCGA-64-5778     TCGA-64-5779 
"TBX3 WILD-TYPE" "TBX3 WILD-TYPE" "TBX3 WILD-TYPE" "TBX3 WILD-TYPE" 
    TCGA-64-5781     TCGA-64-5815     TCGA-67-3770     TCGA-67-3771 
"TBX3 WILD-TYPE" "TBX3 WILD-TYPE" "TBX3 WILD-TYPE" "TBX3 WILD-TYPE" 
    TCGA-67-3772     TCGA-67-3773     TCGA-67-3774     TCGA-67-6215 
"TBX3 WILD-TYPE" "TBX3 WILD-TYPE" "TBX3 WILD-TYPE" "TBX3 WILD-TYPE" 
    TCGA-67-6216     TCGA-67-6217     TCGA-71-6725     TCGA-73-4658 
"TBX3 WILD-TYPE" "TBX3 WILD-TYPE" "TBX3 WILD-TYPE" "TBX3 WILD-TYPE" 
    TCGA-73-4659     TCGA-73-4662     TCGA-73-4666     TCGA-73-4668 
"TBX3 WILD-TYPE"   "TBX3 MUTATED"   "TBX3 MUTATED" "TBX3 WILD-TYPE" 
    TCGA-73-4670     TCGA-73-4675     TCGA-73-4676     TCGA-73-4677 
"TBX3 WILD-TYPE" "TBX3 WILD-TYPE" "TBX3 WILD-TYPE" "TBX3 WILD-TYPE" 
    TCGA-91-6828     TCGA-91-6829     TCGA-91-6831     TCGA-91-6835 
"TBX3 WILD-TYPE" "TBX3 WILD-TYPE" "TBX3 WILD-TYPE" "TBX3 WILD-TYPE" 
    TCGA-91-6836 
"TBX3 WILD-TYPE" 
    TCGA-05-4249     TCGA-05-4250     TCGA-05-4382     TCGA-05-4384 
"TBX3 WILD-TYPE"   "TBX3 MUTATED" "TBX3 WILD-TYPE" "TBX3 WILD-TYPE" 
    TCGA-05-4390     TCGA-05-4396     TCGA-05-4397     TCGA-05-4398 
"TBX3 WILD-TYPE" "TBX3 WILD-TYPE" "TBX3 WILD-TYPE" "TBX3 WILD-TYPE" 
    TCGA-05-4402     TCGA-05-4405     TCGA-05-4415     TCGA-05-4417 
"TBX3 WILD-TYPE" "TBX3 WILD-TYPE" "TBX3 WILD-TYPE" "TBX3 WILD-TYPE" 
    TCGA-05-4418     TCGA-05-4420     TCGA-05-4424     TCGA-05-4426 
"TBX3 WILD-TYPE" "TBX3 WILD-TYPE" "TBX3 WILD-TYPE" "TBX3 WILD-TYPE" 
    TCGA-05-4427     TCGA-05-4430     TCGA-05-4432     TCGA-05-4433 
  "TBX3 MUTATED" "TBX3 WILD-TYPE" "TBX3 WILD-TYPE" "TBX3 WILD-TYPE" 
    TCGA-05-4434     TCGA-05-5420     TCGA-05-5423     TCGA-05-5425 
"TBX3 WILD-TYPE" "TBX3 WILD-TYPE" "TBX3 WILD-TYPE" "TBX3 WILD-TYPE" 
    TCGA-05-5429     TCGA-05-5715     TCGA-35-3615     TCGA-35-4122 
"TBX3 WILD-TYPE" "TBX3 WILD-TYPE" "TBX3 WILD-TYPE" "TBX3 WILD-TYPE" 
    TCGA-35-4123     TCGA-35-5375     TCGA-38-4625     TCGA-38-4626 
"TBX3 WILD-TYPE" "TBX3 WILD-TYPE" "TBX3 WILD-TYPE" "TBX3 WILD-TYPE" 
    TCGA-38-4627     TCGA-38-4628     TCGA-38-4629     TCGA-38-4630 
"TBX3 WILD-TYPE" "TBX3 WILD-TYPE"   "TBX3 MUTATED" "TBX3 WILD-TYPE" 
    TCGA-38-4631     TCGA-38-4632     TCGA-38-6178     TCGA-44-2655 
"TBX3 WILD-TYPE" "TBX3 WILD-TYPE" "TBX3 WILD-TYPE" "TBX3 WILD-TYPE" 
    TCGA-44-2656     TCGA-44-2657     TCGA-44-2659     TCGA-44-2661 
  "TBX3 MUTATED" "TBX3 WILD-TYPE" "TBX3 WILD-TYPE" "TBX3 WILD-TYPE" 
    TCGA-44-2662     TCGA-44-2665     TCGA-44-2666     TCGA-44-2668 
"TBX3 WILD-TYPE" "TBX3 WILD-TYPE" "TBX3 WILD-TYPE" "TBX3 WILD-TYPE" 
    TCGA-44-3396     TCGA-44-3398     TCGA-44-3918     TCGA-44-3919 
"TBX3 WILD-TYPE" "TBX3 WILD-TYPE" "TBX3 WILD-TYPE" "TBX3 WILD-TYPE" 
    TCGA-44-4112     TCGA-44-5643     TCGA-44-5645     TCGA-44-6144 
"TBX3 WILD-TYPE" "TBX3 WILD-TYPE" "TBX3 WILD-TYPE" "TBX3 WILD-TYPE" 
    TCGA-44-6145     TCGA-44-6146     TCGA-44-6147     TCGA-44-6148 
"TBX3 WILD-TYPE" "TBX3 WILD-TYPE" "TBX3 WILD-TYPE" "TBX3 WILD-TYPE" 
    TCGA-44-6774     TCGA-44-6775     TCGA-44-6776     TCGA-44-6777 
"TBX3 WILD-TYPE" "TBX3 WILD-TYPE" "TBX3 WILD-TYPE" "TBX3 WILD-TYPE" 
    TCGA-44-6778     TCGA-44-6779     TCGA-49-4486     TCGA-49-4487 
"TBX3 WILD-TYPE" "TBX3 WILD-TYPE" "TBX3 WILD-TYPE" "TBX3 WILD-TYPE" 
    TCGA-49-4488     TCGA-49-4490     TCGA-49-4494     TCGA-49-4501 
"TBX3 WILD-TYPE" "TBX3 WILD-TYPE" "TBX3 WILD-TYPE" "TBX3 WILD-TYPE" 
    TCGA-49-4505     TCGA-49-4506     TCGA-49-4507     TCGA-49-4510 
"TBX3 WILD-TYPE" "TBX3 WILD-TYPE" "TBX3 WILD-TYPE" "TBX3 WILD-TYPE" 
    TCGA-49-4512     TCGA-49-4514     TCGA-49-6742     TCGA-49-6743 
"TBX3 WILD-TYPE" "TBX3 WILD-TYPE" "TBX3 WILD-TYPE" "TBX3 WILD-TYPE" 
    TCGA-49-6744     TCGA-49-6745     TCGA-50-5044     TCGA-50-5045 
"TBX3 WILD-TYPE" "TBX3 WILD-TYPE" "TBX3 WILD-TYPE" "TBX3 WILD-TYPE" 
    TCGA-50-5049     TCGA-50-5051     TCGA-50-5055     TCGA-50-5066 
  "TBX3 MUTATED" "TBX3 WILD-TYPE" "TBX3 WILD-TYPE" "TBX3 WILD-TYPE" 
    TCGA-50-5068     TCGA-50-5072     TCGA-50-5930     TCGA-50-5931 
"TBX3 WILD-TYPE" "TBX3 WILD-TYPE" "TBX3 WILD-TYPE" "TBX3 WILD-TYPE" 
    TCGA-50-5932     TCGA-50-5933     TCGA-50-5935     TCGA-50-5936 
"TBX3 WILD-TYPE" "TBX3 WILD-TYPE" "TBX3 WILD-TYPE" "TBX3 WILD-TYPE" 
    TCGA-50-5939     TCGA-50-5941     TCGA-50-5942     TCGA-50-5944 
"TBX3 WILD-TYPE" "TBX3 WILD-TYPE" "TBX3 WILD-TYPE" "TBX3 WILD-TYPE" 
    TCGA-50-5946     TCGA-50-6590     TCGA-50-6591     TCGA-50-6592 
"TBX3 WILD-TYPE" "TBX3 WILD-TYPE" "TBX3 WILD-TYPE" "TBX3 WILD-TYPE" 
    TCGA-50-6593     TCGA-50-6594     TCGA-50-6595     TCGA-50-6597 
"TBX3 WILD-TYPE" "TBX3 WILD-TYPE" "TBX3 WILD-TYPE" "TBX3 WILD-TYPE" 
    TCGA-55-1592     TCGA-55-1594     TCGA-55-1595     TCGA-55-1596 
"TBX3 WILD-TYPE" "TBX3 WILD-TYPE" "TBX3 WILD-TYPE" "TBX3 WILD-TYPE" 
    TCGA-55-5899     TCGA-55-6543     TCGA-55-6642     TCGA-55-6712 
"TBX3 WILD-TYPE" "TBX3 WILD-TYPE" "TBX3 WILD-TYPE" "TBX3 WILD-TYPE" 
    TCGA-64-1676     TCGA-64-1677     TCGA-64-1678     TCGA-64-1680 
"TBX3 WILD-TYPE" "TBX3 WILD-TYPE" "TBX3 WILD-TYPE" "TBX3 WILD-TYPE" 
    TCGA-64-5774     TCGA-64-5775     TCGA-64-5778     TCGA-64-5779 
"TBX3 WILD-TYPE" "TBX3 WILD-TYPE" "TBX3 WILD-TYPE" "TBX3 WILD-TYPE" 
    TCGA-64-5781     TCGA-64-5815     TCGA-67-3770     TCGA-67-3771 
"TBX3 WILD-TYPE" "TBX3 WILD-TYPE" "TBX3 WILD-TYPE" "TBX3 WILD-TYPE" 
    TCGA-67-3772     TCGA-67-3773     TCGA-67-3774     TCGA-67-6215 
"TBX3 WILD-TYPE" "TBX3 WILD-TYPE" "TBX3 WILD-TYPE" "TBX3 WILD-TYPE" 
    TCGA-67-6216     TCGA-67-6217     TCGA-71-6725     TCGA-73-4658 
"TBX3 WILD-TYPE" "TBX3 WILD-TYPE" "TBX3 WILD-TYPE" "TBX3 WILD-TYPE" 
    TCGA-73-4659     TCGA-73-4662     TCGA-73-4666     TCGA-73-4668 
"TBX3 WILD-TYPE"   "TBX3 MUTATED"   "TBX3 MUTATED" "TBX3 WILD-TYPE" 
    TCGA-73-4670     TCGA-73-4675     TCGA-73-4676     TCGA-73-4677 
"TBX3 WILD-TYPE" "TBX3 WILD-TYPE" "TBX3 WILD-TYPE" "TBX3 WILD-TYPE" 
    TCGA-91-6828     TCGA-91-6829     TCGA-91-6831     TCGA-91-6835 
"TBX3 WILD-TYPE" "TBX3 WILD-TYPE" "TBX3 WILD-TYPE" "TBX3 WILD-TYPE" 
    TCGA-91-6836 
"TBX3 WILD-TYPE" 
    TCGA-05-4249     TCGA-05-4250     TCGA-05-4382     TCGA-05-4384 
"TBX3 WILD-TYPE"   "TBX3 MUTATED" "TBX3 WILD-TYPE" "TBX3 WILD-TYPE" 
    TCGA-05-4390     TCGA-05-4396     TCGA-05-4397     TCGA-05-4398 
"TBX3 WILD-TYPE" "TBX3 WILD-TYPE" "TBX3 WILD-TYPE" "TBX3 WILD-TYPE" 
    TCGA-05-4402     TCGA-05-4405     TCGA-05-4415     TCGA-05-4417 
"TBX3 WILD-TYPE" "TBX3 WILD-TYPE" "TBX3 WILD-TYPE" "TBX3 WILD-TYPE" 
    TCGA-05-4418     TCGA-05-4420     TCGA-05-4424     TCGA-05-4426 
"TBX3 WILD-TYPE" "TBX3 WILD-TYPE" "TBX3 WILD-TYPE" "TBX3 WILD-TYPE" 
    TCGA-05-4427     TCGA-05-4430     TCGA-05-4432     TCGA-05-4433 
  "TBX3 MUTATED" "TBX3 WILD-TYPE" "TBX3 WILD-TYPE" "TBX3 WILD-TYPE" 
    TCGA-05-4434     TCGA-05-5420     TCGA-05-5423     TCGA-05-5425 
"TBX3 WILD-TYPE" "TBX3 WILD-TYPE" "TBX3 WILD-TYPE" "TBX3 WILD-TYPE" 
    TCGA-05-5429     TCGA-05-5715     TCGA-35-3615     TCGA-35-4122 
"TBX3 WILD-TYPE" "TBX3 WILD-TYPE" "TBX3 WILD-TYPE" "TBX3 WILD-TYPE" 
    TCGA-35-4123     TCGA-35-5375     TCGA-38-4625     TCGA-38-4626 
"TBX3 WILD-TYPE" "TBX3 WILD-TYPE" "TBX3 WILD-TYPE" "TBX3 WILD-TYPE" 
    TCGA-38-4627     TCGA-38-4628     TCGA-38-4629     TCGA-38-4630 
"TBX3 WILD-TYPE" "TBX3 WILD-TYPE"   "TBX3 MUTATED" "TBX3 WILD-TYPE" 
    TCGA-38-4631     TCGA-38-4632     TCGA-38-6178     TCGA-44-2655 
"TBX3 WILD-TYPE" "TBX3 WILD-TYPE" "TBX3 WILD-TYPE" "TBX3 WILD-TYPE" 
    TCGA-44-2656     TCGA-44-2657     TCGA-44-2659     TCGA-44-2661 
  "TBX3 MUTATED" "TBX3 WILD-TYPE" "TBX3 WILD-TYPE" "TBX3 WILD-TYPE" 
    TCGA-44-2662     TCGA-44-2665     TCGA-44-2666     TCGA-44-2668 
"TBX3 WILD-TYPE" "TBX3 WILD-TYPE" "TBX3 WILD-TYPE" "TBX3 WILD-TYPE" 
    TCGA-44-3396     TCGA-44-3398     TCGA-44-3918     TCGA-44-3919 
"TBX3 WILD-TYPE" "TBX3 WILD-TYPE" "TBX3 WILD-TYPE" "TBX3 WILD-TYPE" 
    TCGA-44-4112     TCGA-44-5643     TCGA-44-5645     TCGA-44-6144 
"TBX3 WILD-TYPE" "TBX3 WILD-TYPE" "TBX3 WILD-TYPE" "TBX3 WILD-TYPE" 
    TCGA-44-6145     TCGA-44-6146     TCGA-44-6147     TCGA-44-6148 
"TBX3 WILD-TYPE" "TBX3 WILD-TYPE" "TBX3 WILD-TYPE" "TBX3 WILD-TYPE" 
    TCGA-44-6774     TCGA-44-6775     TCGA-44-6776     TCGA-44-6777 
"TBX3 WILD-TYPE" "TBX3 WILD-TYPE" "TBX3 WILD-TYPE" "TBX3 WILD-TYPE" 
    TCGA-44-6778     TCGA-44-6779     TCGA-49-4486     TCGA-49-4487 
"TBX3 WILD-TYPE" "TBX3 WILD-TYPE" "TBX3 WILD-TYPE" "TBX3 WILD-TYPE" 
    TCGA-49-4488     TCGA-49-4490     TCGA-49-4494     TCGA-49-4501 
"TBX3 WILD-TYPE" "TBX3 WILD-TYPE" "TBX3 WILD-TYPE" "TBX3 WILD-TYPE" 
    TCGA-49-4505     TCGA-49-4506     TCGA-49-4507     TCGA-49-4510 
"TBX3 WILD-TYPE" "TBX3 WILD-TYPE" "TBX3 WILD-TYPE" "TBX3 WILD-TYPE" 
    TCGA-49-4512     TCGA-49-4514     TCGA-49-6742     TCGA-49-6743 
"TBX3 WILD-TYPE" "TBX3 WILD-TYPE" "TBX3 WILD-TYPE" "TBX3 WILD-TYPE" 
    TCGA-49-6744     TCGA-49-6745     TCGA-50-5044     TCGA-50-5045 
"TBX3 WILD-TYPE" "TBX3 WILD-TYPE" "TBX3 WILD-TYPE" "TBX3 WILD-TYPE" 
    TCGA-50-5049     TCGA-50-5051     TCGA-50-5055     TCGA-50-5066 
  "TBX3 MUTATED" "TBX3 WILD-TYPE" "TBX3 WILD-TYPE" "TBX3 WILD-TYPE" 
    TCGA-50-5068     TCGA-50-5072     TCGA-50-5930     TCGA-50-5931 
"TBX3 WILD-TYPE" "TBX3 WILD-TYPE" "TBX3 WILD-TYPE" "TBX3 WILD-TYPE" 
    TCGA-50-5932     TCGA-50-5933     TCGA-50-5935     TCGA-50-5936 
"TBX3 WILD-TYPE" "TBX3 WILD-TYPE" "TBX3 WILD-TYPE" "TBX3 WILD-TYPE" 
    TCGA-50-5939     TCGA-50-5941     TCGA-50-5942     TCGA-50-5944 
"TBX3 WILD-TYPE" "TBX3 WILD-TYPE" "TBX3 WILD-TYPE" "TBX3 WILD-TYPE" 
    TCGA-50-5946     TCGA-50-6590     TCGA-50-6591     TCGA-50-6592 
"TBX3 WILD-TYPE" "TBX3 WILD-TYPE" "TBX3 WILD-TYPE" "TBX3 WILD-TYPE" 
    TCGA-50-6593     TCGA-50-6594     TCGA-50-6595     TCGA-50-6597 
"TBX3 WILD-TYPE" "TBX3 WILD-TYPE" "TBX3 WILD-TYPE" "TBX3 WILD-TYPE" 
    TCGA-55-1592     TCGA-55-1594     TCGA-55-1595     TCGA-55-1596 
"TBX3 WILD-TYPE" "TBX3 WILD-TYPE" "TBX3 WILD-TYPE" "TBX3 WILD-TYPE" 
    TCGA-55-5899     TCGA-55-6543     TCGA-55-6642     TCGA-55-6712 
"TBX3 WILD-TYPE" "TBX3 WILD-TYPE" "TBX3 WILD-TYPE" "TBX3 WILD-TYPE" 
    TCGA-64-1676     TCGA-64-1677     TCGA-64-1678     TCGA-64-1680 
"TBX3 WILD-TYPE" "TBX3 WILD-TYPE" "TBX3 WILD-TYPE" "TBX3 WILD-TYPE" 
    TCGA-64-5774     TCGA-64-5775     TCGA-64-5778     TCGA-64-5779 
"TBX3 WILD-TYPE" "TBX3 WILD-TYPE" "TBX3 WILD-TYPE" "TBX3 WILD-TYPE" 
    TCGA-64-5781     TCGA-64-5815     TCGA-67-3770     TCGA-67-3771 
"TBX3 WILD-TYPE" "TBX3 WILD-TYPE" "TBX3 WILD-TYPE" "TBX3 WILD-TYPE" 
    TCGA-67-3772     TCGA-67-3773     TCGA-67-3774     TCGA-67-6215 
"TBX3 WILD-TYPE" "TBX3 WILD-TYPE" "TBX3 WILD-TYPE" "TBX3 WILD-TYPE" 
    TCGA-67-6216     TCGA-67-6217     TCGA-71-6725     TCGA-73-4658 
"TBX3 WILD-TYPE" "TBX3 WILD-TYPE" "TBX3 WILD-TYPE" "TBX3 WILD-TYPE" 
    TCGA-73-4659     TCGA-73-4662     TCGA-73-4666     TCGA-73-4668 
"TBX3 WILD-TYPE"   "TBX3 MUTATED"   "TBX3 MUTATED" "TBX3 WILD-TYPE" 
    TCGA-73-4670     TCGA-73-4675     TCGA-73-4676     TCGA-73-4677 
"TBX3 WILD-TYPE" "TBX3 WILD-TYPE" "TBX3 WILD-TYPE" "TBX3 WILD-TYPE" 
    TCGA-91-6828     TCGA-91-6829     TCGA-91-6831     TCGA-91-6835 
"TBX3 WILD-TYPE" "TBX3 WILD-TYPE" "TBX3 WILD-TYPE" "TBX3 WILD-TYPE" 
    TCGA-91-6836 
"TBX3 WILD-TYPE" 
[1] "hr=" "1.4"
D147V2, continuous
D147V3, binary
[1] "tbl2"
                cls
clus             [,1] [,2]
  TBX3 MUTATED      4    3
  TBX3 WILD-TYPE   89   76
        clus
vv       TBX3 MUTATED TBX3 WILD-TYPE
  FEMALE            4             89
  MALE              3             76
D147V4, continuous
[1] "Remove cluster labels:" "TBX3 MUTATED"          
clus
  TBX3 MUTATED TBX3 WILD-TYPE 
             2             10 
    TCGA-35-4122     TCGA-35-4123     TCGA-35-5375     TCGA-64-1677 
"TBX3 WILD-TYPE" "TBX3 WILD-TYPE" "TBX3 WILD-TYPE" "TBX3 WILD-TYPE" 
    TCGA-64-5778     TCGA-71-6725     TCGA-73-4659     TCGA-73-4668 
"TBX3 WILD-TYPE" "TBX3 WILD-TYPE" "TBX3 WILD-TYPE" "TBX3 WILD-TYPE" 
    TCGA-73-4676     TCGA-75-5122 
"TBX3 WILD-TYPE" "TBX3 WILD-TYPE" 
D147V5, multiclass
D147V6, multiclass
    clus
vv   TBX3 MUTATED TBX3 WILD-TYPE
  T1            2             39
  T2            3            105
  T3            2             12
  T4            0              8
D147V7, multiclass
       clus
vv      TBX3 MUTATED TBX3 WILD-TYPE
  N0               5             90
  N1               2             35
  N2+N3            0             35
D147V8, multiclass
    clus
vv   TBX3 MUTATED TBX3 WILD-TYPE
  M0            6            131
  M1            1              8
  MX            0             22
D147V9, multiclass
     clus
vv    TBX3 MUTATED TBX3 WILD-TYPE
  I              3             85
  II             2             31
  III            1             38
  IV             1              8
D147V10, binary
[1] "tbl2"
                cls
clus             [,1] [,2]
  TBX3 MUTATED      3    4
  TBX3 WILD-TYPE   13  152
     clus
vv    TBX3 MUTATED TBX3 WILD-TYPE
  NO             3             13
  YES            4            152
D147V11, continuous
D147V12, continuous
D147V13, multiclass
                                             clus
vv                                            TBX3 MUTATED TBX3 WILD-TYPE
  CURRENT REFORMED SMOKER FOR < OR = 15 YEARS            5             57
  CURRENT REFORMED SMOKER FOR > 15 YEARS                 1             45
  CURRENT SMOKER                                         0             28
  LIFELONG NON-SMOKER                                    0             24
D147V14, continuous

Clustering(148) Variable = CYP4V2 MUTATION ANALYSIS
D148V1, survival
                  sevent
clus2               0  1
  CYP4V2 MUTATED    2  4
  CYP4V2 WILD-TYPE 97 46
  CYP4V2 MUTATED CYP4V2 WILD-TYPE 
               6              143 
  CYP4V2 MUTATED CYP4V2 WILD-TYPE 
               4               46 
$`CYP4V2 MUTATED`
TCGA-05-4384 TCGA-05-4396 TCGA-38-4632 TCGA-49-4501 TCGA-55-6712 TCGA-91-6829 
       14.01         9.96        44.61        46.72         0.79        41.33 

$`CYP4V2 WILD-TYPE`
TCGA-05-4249 TCGA-05-4250 TCGA-05-4382 TCGA-05-4390 TCGA-05-4397 TCGA-05-4398 
       38.07         3.98        19.92        37.02        24.03        47.05 
TCGA-05-4402 TCGA-05-4405 TCGA-05-4415 TCGA-05-4417 TCGA-05-4418 TCGA-05-4420 
        8.02        20.05         2.96        14.93         8.98        29.95 
TCGA-05-4424 TCGA-05-4426 TCGA-05-4427 TCGA-05-4430 TCGA-05-4432 TCGA-05-4433 
       30.02        26.01        26.01        25.02        25.02        24.00 
TCGA-05-4434 TCGA-05-5420 TCGA-05-5423 TCGA-05-5425 TCGA-05-5429 TCGA-05-5715 
       15.02         1.02         4.96         2.96         0.99         2.04 
TCGA-35-3615 TCGA-35-4122 TCGA-35-4123 TCGA-35-5375 TCGA-38-4625 TCGA-38-4626 
        0.46         7.36         5.95         8.68        47.61        85.32 
TCGA-38-4627 TCGA-38-4628 TCGA-38-4629 TCGA-38-4630 TCGA-38-4631 TCGA-38-6178 
       37.71        49.02        28.37        35.28        11.64         5.19 
TCGA-44-2655 TCGA-44-2656 TCGA-44-2657 TCGA-44-2659 TCGA-44-2661 TCGA-44-2662 
       18.87        19.10        13.15        17.39         3.39        15.78 
TCGA-44-2665 TCGA-44-2666 TCGA-44-2668 TCGA-44-3396 TCGA-44-3398 TCGA-44-3918 
       13.15         3.19         8.09        10.22         8.32         6.44 
TCGA-44-3919 TCGA-44-4112 TCGA-44-5643 TCGA-44-5645 TCGA-44-6144 TCGA-44-6145 
        6.21         4.60         3.48         6.84         0.30         3.35 
TCGA-44-6146 TCGA-44-6147 TCGA-44-6148 TCGA-44-6774 TCGA-44-6775 TCGA-44-6776 
        9.93         7.76         3.12         5.42         2.70        63.72 
TCGA-44-6777 TCGA-44-6778 TCGA-44-6779 TCGA-49-4486 TCGA-49-4487 TCGA-49-4488 
       32.45        36.49        16.41        76.21        28.11        28.57 
TCGA-49-4490 TCGA-49-4494 TCGA-49-4505 TCGA-49-4506 TCGA-49-4507 TCGA-49-4510 
       12.66        35.54        14.07        32.84         8.81        29.46 
TCGA-49-4512 TCGA-49-4514 TCGA-49-6742 TCGA-49-6743 TCGA-49-6744 TCGA-49-6745 
       29.75        43.20        15.02        12.13        12.99         4.93 
TCGA-50-5044 TCGA-50-5045 TCGA-50-5049 TCGA-50-5051 TCGA-50-5055 TCGA-50-5066 
       20.48        71.47        48.82        14.96        25.81         9.76 
TCGA-50-5068 TCGA-50-5072 TCGA-50-5930 TCGA-50-5931 TCGA-50-5932 TCGA-50-5933 
       49.28         8.05         9.27         8.78        35.87        77.88 
TCGA-50-5935 TCGA-50-5936 TCGA-50-5939 TCGA-50-5941 TCGA-50-5942 TCGA-50-5944 
       21.47         8.45        15.12         9.37         4.44        12.26 
TCGA-50-5946 TCGA-50-6590 TCGA-50-6591 TCGA-50-6592 TCGA-50-6593 TCGA-50-6594 
       11.47        42.31         3.88        25.51        11.05        12.16 
TCGA-50-6595 TCGA-50-6597 TCGA-55-1592 TCGA-55-1594 TCGA-55-1595 TCGA-55-1596 
        6.21        33.37        23.05        38.73        48.62        45.17 
TCGA-55-5899 TCGA-55-6543 TCGA-55-6642 TCGA-64-1676 TCGA-64-1677 TCGA-64-1678 
        2.86         0.07        32.61        56.81        20.65        39.09 
TCGA-64-1680 TCGA-64-5774 TCGA-64-5775 TCGA-64-5778 TCGA-64-5779 TCGA-64-5781 
       37.02        83.84         0.10        30.44        16.67        39.52 
TCGA-64-5815 TCGA-67-3770 TCGA-67-3771 TCGA-67-3772 TCGA-67-3773 TCGA-67-3774 
        7.33         0.99         1.97         0.59         2.04         0.59 
TCGA-67-6215 TCGA-67-6216 TCGA-67-6217 TCGA-71-6725 TCGA-73-4658 TCGA-73-4659 
        0.89         0.69        13.87         2.01        52.57        23.38 
TCGA-73-4662 TCGA-73-4666 TCGA-73-4668 TCGA-73-4670 TCGA-73-4675 TCGA-73-4676 
       29.95        20.28        15.35         0.46         1.32         4.01 
TCGA-73-4677 TCGA-91-6828 TCGA-91-6831 TCGA-91-6835 TCGA-91-6836 
        1.25         1.22         1.28         1.15         0.36 

  CYP4V2 MUTATED CYP4V2 WILD-TYPE 
            0.79             0.07 
  CYP4V2 MUTATED CYP4V2 WILD-TYPE 
           46.72            85.32 
  CYP4V2 MUTATED CYP4V2 WILD-TYPE 
           27.67            13.15 
[1] "0.8 - 46.7 (27.7)" "0.1 - 85.3 (13.2)"
      TCGA-05-4249       TCGA-05-4250       TCGA-05-4382       TCGA-05-4384 
"CYP4V2 WILD-TYPE" "CYP4V2 WILD-TYPE" "CYP4V2 WILD-TYPE"   "CYP4V2 MUTATED" 
      TCGA-05-4390       TCGA-05-4396       TCGA-05-4397       TCGA-05-4398 
"CYP4V2 WILD-TYPE"   "CYP4V2 MUTATED" "CYP4V2 WILD-TYPE" "CYP4V2 WILD-TYPE" 
      TCGA-05-4402       TCGA-05-4405       TCGA-05-4415       TCGA-05-4417 
"CYP4V2 WILD-TYPE" "CYP4V2 WILD-TYPE" "CYP4V2 WILD-TYPE" "CYP4V2 WILD-TYPE" 
      TCGA-05-4418       TCGA-05-4420       TCGA-05-4424       TCGA-05-4426 
"CYP4V2 WILD-TYPE" "CYP4V2 WILD-TYPE" "CYP4V2 WILD-TYPE" "CYP4V2 WILD-TYPE" 
      TCGA-05-4427       TCGA-05-4430       TCGA-05-4432       TCGA-05-4433 
"CYP4V2 WILD-TYPE" "CYP4V2 WILD-TYPE" "CYP4V2 WILD-TYPE" "CYP4V2 WILD-TYPE" 
      TCGA-05-4434       TCGA-05-5420       TCGA-05-5423       TCGA-05-5425 
"CYP4V2 WILD-TYPE" "CYP4V2 WILD-TYPE" "CYP4V2 WILD-TYPE" "CYP4V2 WILD-TYPE" 
      TCGA-05-5429       TCGA-05-5715       TCGA-35-3615       TCGA-35-4122 
"CYP4V2 WILD-TYPE" "CYP4V2 WILD-TYPE" "CYP4V2 WILD-TYPE" "CYP4V2 WILD-TYPE" 
      TCGA-35-4123       TCGA-35-5375       TCGA-38-4625       TCGA-38-4626 
"CYP4V2 WILD-TYPE" "CYP4V2 WILD-TYPE" "CYP4V2 WILD-TYPE" "CYP4V2 WILD-TYPE" 
      TCGA-38-4627       TCGA-38-4628       TCGA-38-4629       TCGA-38-4630 
"CYP4V2 WILD-TYPE" "CYP4V2 WILD-TYPE" "CYP4V2 WILD-TYPE" "CYP4V2 WILD-TYPE" 
      TCGA-38-4631       TCGA-38-4632       TCGA-38-6178       TCGA-44-2655 
"CYP4V2 WILD-TYPE"   "CYP4V2 MUTATED" "CYP4V2 WILD-TYPE" "CYP4V2 WILD-TYPE" 
      TCGA-44-2656       TCGA-44-2657       TCGA-44-2659       TCGA-44-2661 
"CYP4V2 WILD-TYPE" "CYP4V2 WILD-TYPE" "CYP4V2 WILD-TYPE" "CYP4V2 WILD-TYPE" 
      TCGA-44-2662       TCGA-44-2665       TCGA-44-2666       TCGA-44-2668 
"CYP4V2 WILD-TYPE" "CYP4V2 WILD-TYPE" "CYP4V2 WILD-TYPE" "CYP4V2 WILD-TYPE" 
      TCGA-44-3396       TCGA-44-3398       TCGA-44-3918       TCGA-44-3919 
"CYP4V2 WILD-TYPE" "CYP4V2 WILD-TYPE" "CYP4V2 WILD-TYPE" "CYP4V2 WILD-TYPE" 
      TCGA-44-4112       TCGA-44-5643       TCGA-44-5645       TCGA-44-6144 
"CYP4V2 WILD-TYPE" "CYP4V2 WILD-TYPE" "CYP4V2 WILD-TYPE" "CYP4V2 WILD-TYPE" 
      TCGA-44-6145       TCGA-44-6146       TCGA-44-6147       TCGA-44-6148 
"CYP4V2 WILD-TYPE" "CYP4V2 WILD-TYPE" "CYP4V2 WILD-TYPE" "CYP4V2 WILD-TYPE" 
      TCGA-44-6774       TCGA-44-6775       TCGA-44-6776       TCGA-44-6777 
"CYP4V2 WILD-TYPE" "CYP4V2 WILD-TYPE" "CYP4V2 WILD-TYPE" "CYP4V2 WILD-TYPE" 
      TCGA-44-6778       TCGA-44-6779       TCGA-49-4486       TCGA-49-4487 
"CYP4V2 WILD-TYPE" "CYP4V2 WILD-TYPE" "CYP4V2 WILD-TYPE" "CYP4V2 WILD-TYPE" 
      TCGA-49-4488       TCGA-49-4490       TCGA-49-4494       TCGA-49-4501 
"CYP4V2 WILD-TYPE" "CYP4V2 WILD-TYPE" "CYP4V2 WILD-TYPE"   "CYP4V2 MUTATED" 
      TCGA-49-4505       TCGA-49-4506       TCGA-49-4507       TCGA-49-4510 
"CYP4V2 WILD-TYPE" "CYP4V2 WILD-TYPE" "CYP4V2 WILD-TYPE" "CYP4V2 WILD-TYPE" 
      TCGA-49-4512       TCGA-49-4514       TCGA-49-6742       TCGA-49-6743 
"CYP4V2 WILD-TYPE" "CYP4V2 WILD-TYPE" "CYP4V2 WILD-TYPE" "CYP4V2 WILD-TYPE" 
      TCGA-49-6744       TCGA-49-6745       TCGA-50-5044       TCGA-50-5045 
"CYP4V2 WILD-TYPE" "CYP4V2 WILD-TYPE" "CYP4V2 WILD-TYPE" "CYP4V2 WILD-TYPE" 
      TCGA-50-5049       TCGA-50-5051       TCGA-50-5055       TCGA-50-5066 
"CYP4V2 WILD-TYPE" "CYP4V2 WILD-TYPE" "CYP4V2 WILD-TYPE" "CYP4V2 WILD-TYPE" 
      TCGA-50-5068       TCGA-50-5072       TCGA-50-5930       TCGA-50-5931 
"CYP4V2 WILD-TYPE" "CYP4V2 WILD-TYPE" "CYP4V2 WILD-TYPE" "CYP4V2 WILD-TYPE" 
      TCGA-50-5932       TCGA-50-5933       TCGA-50-5935       TCGA-50-5936 
"CYP4V2 WILD-TYPE" "CYP4V2 WILD-TYPE" "CYP4V2 WILD-TYPE" "CYP4V2 WILD-TYPE" 
      TCGA-50-5939       TCGA-50-5941       TCGA-50-5942       TCGA-50-5944 
"CYP4V2 WILD-TYPE" "CYP4V2 WILD-TYPE" "CYP4V2 WILD-TYPE" "CYP4V2 WILD-TYPE" 
      TCGA-50-5946       TCGA-50-6590       TCGA-50-6591       TCGA-50-6592 
"CYP4V2 WILD-TYPE" "CYP4V2 WILD-TYPE" "CYP4V2 WILD-TYPE" "CYP4V2 WILD-TYPE" 
      TCGA-50-6593       TCGA-50-6594       TCGA-50-6595       TCGA-50-6597 
"CYP4V2 WILD-TYPE" "CYP4V2 WILD-TYPE" "CYP4V2 WILD-TYPE" "CYP4V2 WILD-TYPE" 
      TCGA-55-1592       TCGA-55-1594       TCGA-55-1595       TCGA-55-1596 
"CYP4V2 WILD-TYPE" "CYP4V2 WILD-TYPE" "CYP4V2 WILD-TYPE" "CYP4V2 WILD-TYPE" 
      TCGA-55-5899       TCGA-55-6543       TCGA-55-6642       TCGA-55-6712 
"CYP4V2 WILD-TYPE" "CYP4V2 WILD-TYPE" "CYP4V2 WILD-TYPE"   "CYP4V2 MUTATED" 
      TCGA-64-1676       TCGA-64-1677       TCGA-64-1678       TCGA-64-1680 
"CYP4V2 WILD-TYPE" "CYP4V2 WILD-TYPE" "CYP4V2 WILD-TYPE" "CYP4V2 WILD-TYPE" 
      TCGA-64-5774       TCGA-64-5775       TCGA-64-5778       TCGA-64-5779 
"CYP4V2 WILD-TYPE" "CYP4V2 WILD-TYPE" "CYP4V2 WILD-TYPE" "CYP4V2 WILD-TYPE" 
      TCGA-64-5781       TCGA-64-5815       TCGA-67-3770       TCGA-67-3771 
"CYP4V2 WILD-TYPE" "CYP4V2 WILD-TYPE" "CYP4V2 WILD-TYPE" "CYP4V2 WILD-TYPE" 
      TCGA-67-3772       TCGA-67-3773       TCGA-67-3774       TCGA-67-6215 
"CYP4V2 WILD-TYPE" "CYP4V2 WILD-TYPE" "CYP4V2 WILD-TYPE" "CYP4V2 WILD-TYPE" 
      TCGA-67-6216       TCGA-67-6217       TCGA-71-6725       TCGA-73-4658 
"CYP4V2 WILD-TYPE" "CYP4V2 WILD-TYPE" "CYP4V2 WILD-TYPE" "CYP4V2 WILD-TYPE" 
      TCGA-73-4659       TCGA-73-4662       TCGA-73-4666       TCGA-73-4668 
"CYP4V2 WILD-TYPE" "CYP4V2 WILD-TYPE" "CYP4V2 WILD-TYPE" "CYP4V2 WILD-TYPE" 
      TCGA-73-4670       TCGA-73-4675       TCGA-73-4676       TCGA-73-4677 
"CYP4V2 WILD-TYPE" "CYP4V2 WILD-TYPE" "CYP4V2 WILD-TYPE" "CYP4V2 WILD-TYPE" 
      TCGA-91-6828       TCGA-91-6829       TCGA-91-6831       TCGA-91-6835 
"CYP4V2 WILD-TYPE"   "CYP4V2 MUTATED" "CYP4V2 WILD-TYPE" "CYP4V2 WILD-TYPE" 
      TCGA-91-6836 
"CYP4V2 WILD-TYPE" 
      TCGA-05-4249       TCGA-05-4250       TCGA-05-4382       TCGA-05-4384 
"CYP4V2 WILD-TYPE" "CYP4V2 WILD-TYPE" "CYP4V2 WILD-TYPE"   "CYP4V2 MUTATED" 
      TCGA-05-4390       TCGA-05-4396       TCGA-05-4397       TCGA-05-4398 
"CYP4V2 WILD-TYPE"   "CYP4V2 MUTATED" "CYP4V2 WILD-TYPE" "CYP4V2 WILD-TYPE" 
      TCGA-05-4402       TCGA-05-4405       TCGA-05-4415       TCGA-05-4417 
"CYP4V2 WILD-TYPE" "CYP4V2 WILD-TYPE" "CYP4V2 WILD-TYPE" "CYP4V2 WILD-TYPE" 
      TCGA-05-4418       TCGA-05-4420       TCGA-05-4424       TCGA-05-4426 
"CYP4V2 WILD-TYPE" "CYP4V2 WILD-TYPE" "CYP4V2 WILD-TYPE" "CYP4V2 WILD-TYPE" 
      TCGA-05-4427       TCGA-05-4430       TCGA-05-4432       TCGA-05-4433 
"CYP4V2 WILD-TYPE" "CYP4V2 WILD-TYPE" "CYP4V2 WILD-TYPE" "CYP4V2 WILD-TYPE" 
      TCGA-05-4434       TCGA-05-5420       TCGA-05-5423       TCGA-05-5425 
"CYP4V2 WILD-TYPE" "CYP4V2 WILD-TYPE" "CYP4V2 WILD-TYPE" "CYP4V2 WILD-TYPE" 
      TCGA-05-5429       TCGA-05-5715       TCGA-35-3615       TCGA-35-4122 
"CYP4V2 WILD-TYPE" "CYP4V2 WILD-TYPE" "CYP4V2 WILD-TYPE" "CYP4V2 WILD-TYPE" 
      TCGA-35-4123       TCGA-35-5375       TCGA-38-4625       TCGA-38-4626 
"CYP4V2 WILD-TYPE" "CYP4V2 WILD-TYPE" "CYP4V2 WILD-TYPE" "CYP4V2 WILD-TYPE" 
      TCGA-38-4627       TCGA-38-4628       TCGA-38-4629       TCGA-38-4630 
"CYP4V2 WILD-TYPE" "CYP4V2 WILD-TYPE" "CYP4V2 WILD-TYPE" "CYP4V2 WILD-TYPE" 
      TCGA-38-4631       TCGA-38-4632       TCGA-38-6178       TCGA-44-2655 
"CYP4V2 WILD-TYPE"   "CYP4V2 MUTATED" "CYP4V2 WILD-TYPE" "CYP4V2 WILD-TYPE" 
      TCGA-44-2656       TCGA-44-2657       TCGA-44-2659       TCGA-44-2661 
"CYP4V2 WILD-TYPE" "CYP4V2 WILD-TYPE" "CYP4V2 WILD-TYPE" "CYP4V2 WILD-TYPE" 
      TCGA-44-2662       TCGA-44-2665       TCGA-44-2666       TCGA-44-2668 
"CYP4V2 WILD-TYPE" "CYP4V2 WILD-TYPE" "CYP4V2 WILD-TYPE" "CYP4V2 WILD-TYPE" 
      TCGA-44-3396       TCGA-44-3398       TCGA-44-3918       TCGA-44-3919 
"CYP4V2 WILD-TYPE" "CYP4V2 WILD-TYPE" "CYP4V2 WILD-TYPE" "CYP4V2 WILD-TYPE" 
      TCGA-44-4112       TCGA-44-5643       TCGA-44-5645       TCGA-44-6144 
"CYP4V2 WILD-TYPE" "CYP4V2 WILD-TYPE" "CYP4V2 WILD-TYPE" "CYP4V2 WILD-TYPE" 
      TCGA-44-6145       TCGA-44-6146       TCGA-44-6147       TCGA-44-6148 
"CYP4V2 WILD-TYPE" "CYP4V2 WILD-TYPE" "CYP4V2 WILD-TYPE" "CYP4V2 WILD-TYPE" 
      TCGA-44-6774       TCGA-44-6775       TCGA-44-6776       TCGA-44-6777 
"CYP4V2 WILD-TYPE" "CYP4V2 WILD-TYPE" "CYP4V2 WILD-TYPE" "CYP4V2 WILD-TYPE" 
      TCGA-44-6778       TCGA-44-6779       TCGA-49-4486       TCGA-49-4487 
"CYP4V2 WILD-TYPE" "CYP4V2 WILD-TYPE" "CYP4V2 WILD-TYPE" "CYP4V2 WILD-TYPE" 
      TCGA-49-4488       TCGA-49-4490       TCGA-49-4494       TCGA-49-4501 
"CYP4V2 WILD-TYPE" "CYP4V2 WILD-TYPE" "CYP4V2 WILD-TYPE"   "CYP4V2 MUTATED" 
      TCGA-49-4505       TCGA-49-4506       TCGA-49-4507       TCGA-49-4510 
"CYP4V2 WILD-TYPE" "CYP4V2 WILD-TYPE" "CYP4V2 WILD-TYPE" "CYP4V2 WILD-TYPE" 
      TCGA-49-4512       TCGA-49-4514       TCGA-49-6742       TCGA-49-6743 
"CYP4V2 WILD-TYPE" "CYP4V2 WILD-TYPE" "CYP4V2 WILD-TYPE" "CYP4V2 WILD-TYPE" 
      TCGA-49-6744       TCGA-49-6745       TCGA-50-5044       TCGA-50-5045 
"CYP4V2 WILD-TYPE" "CYP4V2 WILD-TYPE" "CYP4V2 WILD-TYPE" "CYP4V2 WILD-TYPE" 
      TCGA-50-5049       TCGA-50-5051       TCGA-50-5055       TCGA-50-5066 
"CYP4V2 WILD-TYPE" "CYP4V2 WILD-TYPE" "CYP4V2 WILD-TYPE" "CYP4V2 WILD-TYPE" 
      TCGA-50-5068       TCGA-50-5072       TCGA-50-5930       TCGA-50-5931 
"CYP4V2 WILD-TYPE" "CYP4V2 WILD-TYPE" "CYP4V2 WILD-TYPE" "CYP4V2 WILD-TYPE" 
      TCGA-50-5932       TCGA-50-5933       TCGA-50-5935       TCGA-50-5936 
"CYP4V2 WILD-TYPE" "CYP4V2 WILD-TYPE" "CYP4V2 WILD-TYPE" "CYP4V2 WILD-TYPE" 
      TCGA-50-5939       TCGA-50-5941       TCGA-50-5942       TCGA-50-5944 
"CYP4V2 WILD-TYPE" "CYP4V2 WILD-TYPE" "CYP4V2 WILD-TYPE" "CYP4V2 WILD-TYPE" 
      TCGA-50-5946       TCGA-50-6590       TCGA-50-6591       TCGA-50-6592 
"CYP4V2 WILD-TYPE" "CYP4V2 WILD-TYPE" "CYP4V2 WILD-TYPE" "CYP4V2 WILD-TYPE" 
      TCGA-50-6593       TCGA-50-6594       TCGA-50-6595       TCGA-50-6597 
"CYP4V2 WILD-TYPE" "CYP4V2 WILD-TYPE" "CYP4V2 WILD-TYPE" "CYP4V2 WILD-TYPE" 
      TCGA-55-1592       TCGA-55-1594       TCGA-55-1595       TCGA-55-1596 
"CYP4V2 WILD-TYPE" "CYP4V2 WILD-TYPE" "CYP4V2 WILD-TYPE" "CYP4V2 WILD-TYPE" 
      TCGA-55-5899       TCGA-55-6543       TCGA-55-6642       TCGA-55-6712 
"CYP4V2 WILD-TYPE" "CYP4V2 WILD-TYPE" "CYP4V2 WILD-TYPE"   "CYP4V2 MUTATED" 
      TCGA-64-1676       TCGA-64-1677       TCGA-64-1678       TCGA-64-1680 
"CYP4V2 WILD-TYPE" "CYP4V2 WILD-TYPE" "CYP4V2 WILD-TYPE" "CYP4V2 WILD-TYPE" 
      TCGA-64-5774       TCGA-64-5775       TCGA-64-5778       TCGA-64-5779 
"CYP4V2 WILD-TYPE" "CYP4V2 WILD-TYPE" "CYP4V2 WILD-TYPE" "CYP4V2 WILD-TYPE" 
      TCGA-64-5781       TCGA-64-5815       TCGA-67-3770       TCGA-67-3771 
"CYP4V2 WILD-TYPE" "CYP4V2 WILD-TYPE" "CYP4V2 WILD-TYPE" "CYP4V2 WILD-TYPE" 
      TCGA-67-3772       TCGA-67-3773       TCGA-67-3774       TCGA-67-6215 
"CYP4V2 WILD-TYPE" "CYP4V2 WILD-TYPE" "CYP4V2 WILD-TYPE" "CYP4V2 WILD-TYPE" 
      TCGA-67-6216       TCGA-67-6217       TCGA-71-6725       TCGA-73-4658 
"CYP4V2 WILD-TYPE" "CYP4V2 WILD-TYPE" "CYP4V2 WILD-TYPE" "CYP4V2 WILD-TYPE" 
      TCGA-73-4659       TCGA-73-4662       TCGA-73-4666       TCGA-73-4668 
"CYP4V2 WILD-TYPE" "CYP4V2 WILD-TYPE" "CYP4V2 WILD-TYPE" "CYP4V2 WILD-TYPE" 
      TCGA-73-4670       TCGA-73-4675       TCGA-73-4676       TCGA-73-4677 
"CYP4V2 WILD-TYPE" "CYP4V2 WILD-TYPE" "CYP4V2 WILD-TYPE" "CYP4V2 WILD-TYPE" 
      TCGA-91-6828       TCGA-91-6829       TCGA-91-6831       TCGA-91-6835 
"CYP4V2 WILD-TYPE"   "CYP4V2 MUTATED" "CYP4V2 WILD-TYPE" "CYP4V2 WILD-TYPE" 
      TCGA-91-6836 
"CYP4V2 WILD-TYPE" 
      TCGA-05-4249       TCGA-05-4250       TCGA-05-4382       TCGA-05-4384 
"CYP4V2 WILD-TYPE" "CYP4V2 WILD-TYPE" "CYP4V2 WILD-TYPE"   "CYP4V2 MUTATED" 
      TCGA-05-4390       TCGA-05-4396       TCGA-05-4397       TCGA-05-4398 
"CYP4V2 WILD-TYPE"   "CYP4V2 MUTATED" "CYP4V2 WILD-TYPE" "CYP4V2 WILD-TYPE" 
      TCGA-05-4402       TCGA-05-4405       TCGA-05-4415       TCGA-05-4417 
"CYP4V2 WILD-TYPE" "CYP4V2 WILD-TYPE" "CYP4V2 WILD-TYPE" "CYP4V2 WILD-TYPE" 
      TCGA-05-4418       TCGA-05-4420       TCGA-05-4424       TCGA-05-4426 
"CYP4V2 WILD-TYPE" "CYP4V2 WILD-TYPE" "CYP4V2 WILD-TYPE" "CYP4V2 WILD-TYPE" 
      TCGA-05-4427       TCGA-05-4430       TCGA-05-4432       TCGA-05-4433 
"CYP4V2 WILD-TYPE" "CYP4V2 WILD-TYPE" "CYP4V2 WILD-TYPE" "CYP4V2 WILD-TYPE" 
      TCGA-05-4434       TCGA-05-5420       TCGA-05-5423       TCGA-05-5425 
"CYP4V2 WILD-TYPE" "CYP4V2 WILD-TYPE" "CYP4V2 WILD-TYPE" "CYP4V2 WILD-TYPE" 
      TCGA-05-5429       TCGA-05-5715       TCGA-35-3615       TCGA-35-4122 
"CYP4V2 WILD-TYPE" "CYP4V2 WILD-TYPE" "CYP4V2 WILD-TYPE" "CYP4V2 WILD-TYPE" 
      TCGA-35-4123       TCGA-35-5375       TCGA-38-4625       TCGA-38-4626 
"CYP4V2 WILD-TYPE" "CYP4V2 WILD-TYPE" "CYP4V2 WILD-TYPE" "CYP4V2 WILD-TYPE" 
      TCGA-38-4627       TCGA-38-4628       TCGA-38-4629       TCGA-38-4630 
"CYP4V2 WILD-TYPE" "CYP4V2 WILD-TYPE" "CYP4V2 WILD-TYPE" "CYP4V2 WILD-TYPE" 
      TCGA-38-4631       TCGA-38-4632       TCGA-38-6178       TCGA-44-2655 
"CYP4V2 WILD-TYPE"   "CYP4V2 MUTATED" "CYP4V2 WILD-TYPE" "CYP4V2 WILD-TYPE" 
      TCGA-44-2656       TCGA-44-2657       TCGA-44-2659       TCGA-44-2661 
"CYP4V2 WILD-TYPE" "CYP4V2 WILD-TYPE" "CYP4V2 WILD-TYPE" "CYP4V2 WILD-TYPE" 
      TCGA-44-2662       TCGA-44-2665       TCGA-44-2666       TCGA-44-2668 
"CYP4V2 WILD-TYPE" "CYP4V2 WILD-TYPE" "CYP4V2 WILD-TYPE" "CYP4V2 WILD-TYPE" 
      TCGA-44-3396       TCGA-44-3398       TCGA-44-3918       TCGA-44-3919 
"CYP4V2 WILD-TYPE" "CYP4V2 WILD-TYPE" "CYP4V2 WILD-TYPE" "CYP4V2 WILD-TYPE" 
      TCGA-44-4112       TCGA-44-5643       TCGA-44-5645       TCGA-44-6144 
"CYP4V2 WILD-TYPE" "CYP4V2 WILD-TYPE" "CYP4V2 WILD-TYPE" "CYP4V2 WILD-TYPE" 
      TCGA-44-6145       TCGA-44-6146       TCGA-44-6147       TCGA-44-6148 
"CYP4V2 WILD-TYPE" "CYP4V2 WILD-TYPE" "CYP4V2 WILD-TYPE" "CYP4V2 WILD-TYPE" 
      TCGA-44-6774       TCGA-44-6775       TCGA-44-6776       TCGA-44-6777 
"CYP4V2 WILD-TYPE" "CYP4V2 WILD-TYPE" "CYP4V2 WILD-TYPE" "CYP4V2 WILD-TYPE" 
      TCGA-44-6778       TCGA-44-6779       TCGA-49-4486       TCGA-49-4487 
"CYP4V2 WILD-TYPE" "CYP4V2 WILD-TYPE" "CYP4V2 WILD-TYPE" "CYP4V2 WILD-TYPE" 
      TCGA-49-4488       TCGA-49-4490       TCGA-49-4494       TCGA-49-4501 
"CYP4V2 WILD-TYPE" "CYP4V2 WILD-TYPE" "CYP4V2 WILD-TYPE"   "CYP4V2 MUTATED" 
      TCGA-49-4505       TCGA-49-4506       TCGA-49-4507       TCGA-49-4510 
"CYP4V2 WILD-TYPE" "CYP4V2 WILD-TYPE" "CYP4V2 WILD-TYPE" "CYP4V2 WILD-TYPE" 
      TCGA-49-4512       TCGA-49-4514       TCGA-49-6742       TCGA-49-6743 
"CYP4V2 WILD-TYPE" "CYP4V2 WILD-TYPE" "CYP4V2 WILD-TYPE" "CYP4V2 WILD-TYPE" 
      TCGA-49-6744       TCGA-49-6745       TCGA-50-5044       TCGA-50-5045 
"CYP4V2 WILD-TYPE" "CYP4V2 WILD-TYPE" "CYP4V2 WILD-TYPE" "CYP4V2 WILD-TYPE" 
      TCGA-50-5049       TCGA-50-5051       TCGA-50-5055       TCGA-50-5066 
"CYP4V2 WILD-TYPE" "CYP4V2 WILD-TYPE" "CYP4V2 WILD-TYPE" "CYP4V2 WILD-TYPE" 
      TCGA-50-5068       TCGA-50-5072       TCGA-50-5930       TCGA-50-5931 
"CYP4V2 WILD-TYPE" "CYP4V2 WILD-TYPE" "CYP4V2 WILD-TYPE" "CYP4V2 WILD-TYPE" 
      TCGA-50-5932       TCGA-50-5933       TCGA-50-5935       TCGA-50-5936 
"CYP4V2 WILD-TYPE" "CYP4V2 WILD-TYPE" "CYP4V2 WILD-TYPE" "CYP4V2 WILD-TYPE" 
      TCGA-50-5939       TCGA-50-5941       TCGA-50-5942       TCGA-50-5944 
"CYP4V2 WILD-TYPE" "CYP4V2 WILD-TYPE" "CYP4V2 WILD-TYPE" "CYP4V2 WILD-TYPE" 
      TCGA-50-5946       TCGA-50-6590       TCGA-50-6591       TCGA-50-6592 
"CYP4V2 WILD-TYPE" "CYP4V2 WILD-TYPE" "CYP4V2 WILD-TYPE" "CYP4V2 WILD-TYPE" 
      TCGA-50-6593       TCGA-50-6594       TCGA-50-6595       TCGA-50-6597 
"CYP4V2 WILD-TYPE" "CYP4V2 WILD-TYPE" "CYP4V2 WILD-TYPE" "CYP4V2 WILD-TYPE" 
      TCGA-55-1592       TCGA-55-1594       TCGA-55-1595       TCGA-55-1596 
"CYP4V2 WILD-TYPE" "CYP4V2 WILD-TYPE" "CYP4V2 WILD-TYPE" "CYP4V2 WILD-TYPE" 
      TCGA-55-5899       TCGA-55-6543       TCGA-55-6642       TCGA-55-6712 
"CYP4V2 WILD-TYPE" "CYP4V2 WILD-TYPE" "CYP4V2 WILD-TYPE"   "CYP4V2 MUTATED" 
      TCGA-64-1676       TCGA-64-1677       TCGA-64-1678       TCGA-64-1680 
"CYP4V2 WILD-TYPE" "CYP4V2 WILD-TYPE" "CYP4V2 WILD-TYPE" "CYP4V2 WILD-TYPE" 
      TCGA-64-5774       TCGA-64-5775       TCGA-64-5778       TCGA-64-5779 
"CYP4V2 WILD-TYPE" "CYP4V2 WILD-TYPE" "CYP4V2 WILD-TYPE" "CYP4V2 WILD-TYPE" 
      TCGA-64-5781       TCGA-64-5815       TCGA-67-3770       TCGA-67-3771 
"CYP4V2 WILD-TYPE" "CYP4V2 WILD-TYPE" "CYP4V2 WILD-TYPE" "CYP4V2 WILD-TYPE" 
      TCGA-67-3772       TCGA-67-3773       TCGA-67-3774       TCGA-67-6215 
"CYP4V2 WILD-TYPE" "CYP4V2 WILD-TYPE" "CYP4V2 WILD-TYPE" "CYP4V2 WILD-TYPE" 
      TCGA-67-6216       TCGA-67-6217       TCGA-71-6725       TCGA-73-4658 
"CYP4V2 WILD-TYPE" "CYP4V2 WILD-TYPE" "CYP4V2 WILD-TYPE" "CYP4V2 WILD-TYPE" 
      TCGA-73-4659       TCGA-73-4662       TCGA-73-4666       TCGA-73-4668 
"CYP4V2 WILD-TYPE" "CYP4V2 WILD-TYPE" "CYP4V2 WILD-TYPE" "CYP4V2 WILD-TYPE" 
      TCGA-73-4670       TCGA-73-4675       TCGA-73-4676       TCGA-73-4677 
"CYP4V2 WILD-TYPE" "CYP4V2 WILD-TYPE" "CYP4V2 WILD-TYPE" "CYP4V2 WILD-TYPE" 
      TCGA-91-6828       TCGA-91-6829       TCGA-91-6831       TCGA-91-6835 
"CYP4V2 WILD-TYPE"   "CYP4V2 MUTATED" "CYP4V2 WILD-TYPE" "CYP4V2 WILD-TYPE" 
      TCGA-91-6836 
"CYP4V2 WILD-TYPE" 
[1] "hr=" "1.5"
D148V2, continuous
D148V3, binary
[1] "tbl2"
                  cls
clus               [,1] [,2]
  CYP4V2 MUTATED      1    5
  CYP4V2 WILD-TYPE   92   74
        clus
vv       CYP4V2 MUTATED CYP4V2 WILD-TYPE
  FEMALE              1               92
  MALE                5               74
D148V4, continuous
D148V5, multiclass
D148V6, multiclass
    clus
vv   CYP4V2 MUTATED CYP4V2 WILD-TYPE
  T1              0               41
  T2              5              103
  T3              0               14
  T4              1                7
D148V7, multiclass
       clus
vv      CYP4V2 MUTATED CYP4V2 WILD-TYPE
  N0                 2               93
  N1                 3               34
  N2+N3              1               34
D148V8, multiclass
    clus
vv   CYP4V2 MUTATED CYP4V2 WILD-TYPE
  M0              3              134
  M1              1                8
  MX              2               20
D148V9, multiclass
     clus
vv    CYP4V2 MUTATED CYP4V2 WILD-TYPE
  I                2               86
  II               0               33
  III              2               37
  IV               1                8
D148V10, binary
[1] "tbl2"
                  cls
clus               [,1] [,2]
  CYP4V2 MUTATED      0    6
  CYP4V2 WILD-TYPE   16  150
     clus
vv    CYP4V2 MUTATED CYP4V2 WILD-TYPE
  NO               0               16
  YES              6              150
D148V11, continuous
D148V12, continuous
D148V13, multiclass
                                             clus
vv                                            CYP4V2 MUTATED CYP4V2 WILD-TYPE
  CURRENT REFORMED SMOKER FOR < OR = 15 YEARS              3               59
  CURRENT REFORMED SMOKER FOR > 15 YEARS                   2               44
  CURRENT SMOKER                                           0               28
  LIFELONG NON-SMOKER                                      1               23
D148V14, continuous

Clustering(149) Variable = PI15 MUTATION ANALYSIS
D149V1, survival
                sevent
clus2             0  1
  PI15 MUTATED    6  1
  PI15 WILD-TYPE 93 49
  PI15 MUTATED PI15 WILD-TYPE 
             7            142 
  PI15 MUTATED PI15 WILD-TYPE 
             1             49 
$`PI15 MUTATED`
TCGA-05-4396 TCGA-05-4427 TCGA-55-1594 TCGA-55-1595 TCGA-64-1678 TCGA-91-6828 
        9.96        26.01        38.73        48.62        39.09         1.22 
TCGA-91-6836 
        0.36 

$`PI15 WILD-TYPE`
TCGA-05-4249 TCGA-05-4250 TCGA-05-4382 TCGA-05-4384 TCGA-05-4390 TCGA-05-4397 
       38.07         3.98        19.92        14.01        37.02        24.03 
TCGA-05-4398 TCGA-05-4402 TCGA-05-4405 TCGA-05-4415 TCGA-05-4417 TCGA-05-4418 
       47.05         8.02        20.05         2.96        14.93         8.98 
TCGA-05-4420 TCGA-05-4424 TCGA-05-4426 TCGA-05-4430 TCGA-05-4432 TCGA-05-4433 
       29.95        30.02        26.01        25.02        25.02        24.00 
TCGA-05-4434 TCGA-05-5420 TCGA-05-5423 TCGA-05-5425 TCGA-05-5429 TCGA-05-5715 
       15.02         1.02         4.96         2.96         0.99         2.04 
TCGA-35-3615 TCGA-35-4122 TCGA-35-4123 TCGA-35-5375 TCGA-38-4625 TCGA-38-4626 
        0.46         7.36         5.95         8.68        47.61        85.32 
TCGA-38-4627 TCGA-38-4628 TCGA-38-4629 TCGA-38-4630 TCGA-38-4631 TCGA-38-4632 
       37.71        49.02        28.37        35.28        11.64        44.61 
TCGA-38-6178 TCGA-44-2655 TCGA-44-2656 TCGA-44-2657 TCGA-44-2659 TCGA-44-2661 
        5.19        18.87        19.10        13.15        17.39         3.39 
TCGA-44-2662 TCGA-44-2665 TCGA-44-2666 TCGA-44-2668 TCGA-44-3396 TCGA-44-3398 
       15.78        13.15         3.19         8.09        10.22         8.32 
TCGA-44-3918 TCGA-44-3919 TCGA-44-4112 TCGA-44-5643 TCGA-44-5645 TCGA-44-6144 
        6.44         6.21         4.60         3.48         6.84         0.30 
TCGA-44-6145 TCGA-44-6146 TCGA-44-6147 TCGA-44-6148 TCGA-44-6774 TCGA-44-6775 
        3.35         9.93         7.76         3.12         5.42         2.70 
TCGA-44-6776 TCGA-44-6777 TCGA-44-6778 TCGA-44-6779 TCGA-49-4486 TCGA-49-4487 
       63.72        32.45        36.49        16.41        76.21        28.11 
TCGA-49-4488 TCGA-49-4490 TCGA-49-4494 TCGA-49-4501 TCGA-49-4505 TCGA-49-4506 
       28.57        12.66        35.54        46.72        14.07        32.84 
TCGA-49-4507 TCGA-49-4510 TCGA-49-4512 TCGA-49-4514 TCGA-49-6742 TCGA-49-6743 
        8.81        29.46        29.75        43.20        15.02        12.13 
TCGA-49-6744 TCGA-49-6745 TCGA-50-5044 TCGA-50-5045 TCGA-50-5049 TCGA-50-5051 
       12.99         4.93        20.48        71.47        48.82        14.96 
TCGA-50-5055 TCGA-50-5066 TCGA-50-5068 TCGA-50-5072 TCGA-50-5930 TCGA-50-5931 
       25.81         9.76        49.28         8.05         9.27         8.78 
TCGA-50-5932 TCGA-50-5933 TCGA-50-5935 TCGA-50-5936 TCGA-50-5939 TCGA-50-5941 
       35.87        77.88        21.47         8.45        15.12         9.37 
TCGA-50-5942 TCGA-50-5944 TCGA-50-5946 TCGA-50-6590 TCGA-50-6591 TCGA-50-6592 
        4.44        12.26        11.47        42.31         3.88        25.51 
TCGA-50-6593 TCGA-50-6594 TCGA-50-6595 TCGA-50-6597 TCGA-55-1592 TCGA-55-1596 
       11.05        12.16         6.21        33.37        23.05        45.17 
TCGA-55-5899 TCGA-55-6543 TCGA-55-6642 TCGA-55-6712 TCGA-64-1676 TCGA-64-1677 
        2.86         0.07        32.61         0.79        56.81        20.65 
TCGA-64-1680 TCGA-64-5774 TCGA-64-5775 TCGA-64-5778 TCGA-64-5779 TCGA-64-5781 
       37.02        83.84         0.10        30.44        16.67        39.52 
TCGA-64-5815 TCGA-67-3770 TCGA-67-3771 TCGA-67-3772 TCGA-67-3773 TCGA-67-3774 
        7.33         0.99         1.97         0.59         2.04         0.59 
TCGA-67-6215 TCGA-67-6216 TCGA-67-6217 TCGA-71-6725 TCGA-73-4658 TCGA-73-4659 
        0.89         0.69        13.87         2.01        52.57        23.38 
TCGA-73-4662 TCGA-73-4666 TCGA-73-4668 TCGA-73-4670 TCGA-73-4675 TCGA-73-4676 
       29.95        20.28        15.35         0.46         1.32         4.01 
TCGA-73-4677 TCGA-91-6829 TCGA-91-6831 TCGA-91-6835 
        1.25        41.33         1.28         1.15 

  PI15 MUTATED PI15 WILD-TYPE 
          0.36           0.07 
  PI15 MUTATED PI15 WILD-TYPE 
         48.62          85.32 
  PI15 MUTATED PI15 WILD-TYPE 
         26.01          13.51 
[1] "0.4 - 48.6 (26.0)" "0.1 - 85.3 (13.5)"
    TCGA-05-4249     TCGA-05-4250     TCGA-05-4382     TCGA-05-4384 
"PI15 WILD-TYPE" "PI15 WILD-TYPE" "PI15 WILD-TYPE" "PI15 WILD-TYPE" 
    TCGA-05-4390     TCGA-05-4396     TCGA-05-4397     TCGA-05-4398 
"PI15 WILD-TYPE"   "PI15 MUTATED" "PI15 WILD-TYPE" "PI15 WILD-TYPE" 
    TCGA-05-4402     TCGA-05-4405     TCGA-05-4415     TCGA-05-4417 
"PI15 WILD-TYPE" "PI15 WILD-TYPE" "PI15 WILD-TYPE" "PI15 WILD-TYPE" 
    TCGA-05-4418     TCGA-05-4420     TCGA-05-4424     TCGA-05-4426 
"PI15 WILD-TYPE" "PI15 WILD-TYPE" "PI15 WILD-TYPE" "PI15 WILD-TYPE" 
    TCGA-05-4427     TCGA-05-4430     TCGA-05-4432     TCGA-05-4433 
  "PI15 MUTATED" "PI15 WILD-TYPE" "PI15 WILD-TYPE" "PI15 WILD-TYPE" 
    TCGA-05-4434     TCGA-05-5420     TCGA-05-5423     TCGA-05-5425 
"PI15 WILD-TYPE" "PI15 WILD-TYPE" "PI15 WILD-TYPE" "PI15 WILD-TYPE" 
    TCGA-05-5429     TCGA-05-5715     TCGA-35-3615     TCGA-35-4122 
"PI15 WILD-TYPE" "PI15 WILD-TYPE" "PI15 WILD-TYPE" "PI15 WILD-TYPE" 
    TCGA-35-4123     TCGA-35-5375     TCGA-38-4625     TCGA-38-4626 
"PI15 WILD-TYPE" "PI15 WILD-TYPE" "PI15 WILD-TYPE" "PI15 WILD-TYPE" 
    TCGA-38-4627     TCGA-38-4628     TCGA-38-4629     TCGA-38-4630 
"PI15 WILD-TYPE" "PI15 WILD-TYPE" "PI15 WILD-TYPE" "PI15 WILD-TYPE" 
    TCGA-38-4631     TCGA-38-4632     TCGA-38-6178     TCGA-44-2655 
"PI15 WILD-TYPE" "PI15 WILD-TYPE" "PI15 WILD-TYPE" "PI15 WILD-TYPE" 
    TCGA-44-2656     TCGA-44-2657     TCGA-44-2659     TCGA-44-2661 
"PI15 WILD-TYPE" "PI15 WILD-TYPE" "PI15 WILD-TYPE" "PI15 WILD-TYPE" 
    TCGA-44-2662     TCGA-44-2665     TCGA-44-2666     TCGA-44-2668 
"PI15 WILD-TYPE" "PI15 WILD-TYPE" "PI15 WILD-TYPE" "PI15 WILD-TYPE" 
    TCGA-44-3396     TCGA-44-3398     TCGA-44-3918     TCGA-44-3919 
"PI15 WILD-TYPE" "PI15 WILD-TYPE" "PI15 WILD-TYPE" "PI15 WILD-TYPE" 
    TCGA-44-4112     TCGA-44-5643     TCGA-44-5645     TCGA-44-6144 
"PI15 WILD-TYPE" "PI15 WILD-TYPE" "PI15 WILD-TYPE" "PI15 WILD-TYPE" 
    TCGA-44-6145     TCGA-44-6146     TCGA-44-6147     TCGA-44-6148 
"PI15 WILD-TYPE" "PI15 WILD-TYPE" "PI15 WILD-TYPE" "PI15 WILD-TYPE" 
    TCGA-44-6774     TCGA-44-6775     TCGA-44-6776     TCGA-44-6777 
"PI15 WILD-TYPE" "PI15 WILD-TYPE" "PI15 WILD-TYPE" "PI15 WILD-TYPE" 
    TCGA-44-6778     TCGA-44-6779     TCGA-49-4486     TCGA-49-4487 
"PI15 WILD-TYPE" "PI15 WILD-TYPE" "PI15 WILD-TYPE" "PI15 WILD-TYPE" 
    TCGA-49-4488     TCGA-49-4490     TCGA-49-4494     TCGA-49-4501 
"PI15 WILD-TYPE" "PI15 WILD-TYPE" "PI15 WILD-TYPE" "PI15 WILD-TYPE" 
    TCGA-49-4505     TCGA-49-4506     TCGA-49-4507     TCGA-49-4510 
"PI15 WILD-TYPE" "PI15 WILD-TYPE" "PI15 WILD-TYPE" "PI15 WILD-TYPE" 
    TCGA-49-4512     TCGA-49-4514     TCGA-49-6742     TCGA-49-6743 
"PI15 WILD-TYPE" "PI15 WILD-TYPE" "PI15 WILD-TYPE" "PI15 WILD-TYPE" 
    TCGA-49-6744     TCGA-49-6745     TCGA-50-5044     TCGA-50-5045 
"PI15 WILD-TYPE" "PI15 WILD-TYPE" "PI15 WILD-TYPE" "PI15 WILD-TYPE" 
    TCGA-50-5049     TCGA-50-5051     TCGA-50-5055     TCGA-50-5066 
"PI15 WILD-TYPE" "PI15 WILD-TYPE" "PI15 WILD-TYPE" "PI15 WILD-TYPE" 
    TCGA-50-5068     TCGA-50-5072     TCGA-50-5930     TCGA-50-5931 
"PI15 WILD-TYPE" "PI15 WILD-TYPE" "PI15 WILD-TYPE" "PI15 WILD-TYPE" 
    TCGA-50-5932     TCGA-50-5933     TCGA-50-5935     TCGA-50-5936 
"PI15 WILD-TYPE" "PI15 WILD-TYPE" "PI15 WILD-TYPE" "PI15 WILD-TYPE" 
    TCGA-50-5939     TCGA-50-5941     TCGA-50-5942     TCGA-50-5944 
"PI15 WILD-TYPE" "PI15 WILD-TYPE" "PI15 WILD-TYPE" "PI15 WILD-TYPE" 
    TCGA-50-5946     TCGA-50-6590     TCGA-50-6591     TCGA-50-6592 
"PI15 WILD-TYPE" "PI15 WILD-TYPE" "PI15 WILD-TYPE" "PI15 WILD-TYPE" 
    TCGA-50-6593     TCGA-50-6594     TCGA-50-6595     TCGA-50-6597 
"PI15 WILD-TYPE" "PI15 WILD-TYPE" "PI15 WILD-TYPE" "PI15 WILD-TYPE" 
    TCGA-55-1592     TCGA-55-1594     TCGA-55-1595     TCGA-55-1596 
"PI15 WILD-TYPE"   "PI15 MUTATED"   "PI15 MUTATED" "PI15 WILD-TYPE" 
    TCGA-55-5899     TCGA-55-6543     TCGA-55-6642     TCGA-55-6712 
"PI15 WILD-TYPE" "PI15 WILD-TYPE" "PI15 WILD-TYPE" "PI15 WILD-TYPE" 
    TCGA-64-1676     TCGA-64-1677     TCGA-64-1678     TCGA-64-1680 
"PI15 WILD-TYPE" "PI15 WILD-TYPE"   "PI15 MUTATED" "PI15 WILD-TYPE" 
    TCGA-64-5774     TCGA-64-5775     TCGA-64-5778     TCGA-64-5779 
"PI15 WILD-TYPE" "PI15 WILD-TYPE" "PI15 WILD-TYPE" "PI15 WILD-TYPE" 
    TCGA-64-5781     TCGA-64-5815     TCGA-67-3770     TCGA-67-3771 
"PI15 WILD-TYPE" "PI15 WILD-TYPE" "PI15 WILD-TYPE" "PI15 WILD-TYPE" 
    TCGA-67-3772     TCGA-67-3773     TCGA-67-3774     TCGA-67-6215 
"PI15 WILD-TYPE" "PI15 WILD-TYPE" "PI15 WILD-TYPE" "PI15 WILD-TYPE" 
    TCGA-67-6216     TCGA-67-6217     TCGA-71-6725     TCGA-73-4658 
"PI15 WILD-TYPE" "PI15 WILD-TYPE" "PI15 WILD-TYPE" "PI15 WILD-TYPE" 
    TCGA-73-4659     TCGA-73-4662     TCGA-73-4666     TCGA-73-4668 
"PI15 WILD-TYPE" "PI15 WILD-TYPE" "PI15 WILD-TYPE" "PI15 WILD-TYPE" 
    TCGA-73-4670     TCGA-73-4675     TCGA-73-4676     TCGA-73-4677 
"PI15 WILD-TYPE" "PI15 WILD-TYPE" "PI15 WILD-TYPE" "PI15 WILD-TYPE" 
    TCGA-91-6828     TCGA-91-6829     TCGA-91-6831     TCGA-91-6835 
  "PI15 MUTATED" "PI15 WILD-TYPE" "PI15 WILD-TYPE" "PI15 WILD-TYPE" 
    TCGA-91-6836 
  "PI15 MUTATED" 
    TCGA-05-4249     TCGA-05-4250     TCGA-05-4382     TCGA-05-4384 
"PI15 WILD-TYPE" "PI15 WILD-TYPE" "PI15 WILD-TYPE" "PI15 WILD-TYPE" 
    TCGA-05-4390     TCGA-05-4396     TCGA-05-4397     TCGA-05-4398 
"PI15 WILD-TYPE"   "PI15 MUTATED" "PI15 WILD-TYPE" "PI15 WILD-TYPE" 
    TCGA-05-4402     TCGA-05-4405     TCGA-05-4415     TCGA-05-4417 
"PI15 WILD-TYPE" "PI15 WILD-TYPE" "PI15 WILD-TYPE" "PI15 WILD-TYPE" 
    TCGA-05-4418     TCGA-05-4420     TCGA-05-4424     TCGA-05-4426 
"PI15 WILD-TYPE" "PI15 WILD-TYPE" "PI15 WILD-TYPE" "PI15 WILD-TYPE" 
    TCGA-05-4427     TCGA-05-4430     TCGA-05-4432     TCGA-05-4433 
  "PI15 MUTATED" "PI15 WILD-TYPE" "PI15 WILD-TYPE" "PI15 WILD-TYPE" 
    TCGA-05-4434     TCGA-05-5420     TCGA-05-5423     TCGA-05-5425 
"PI15 WILD-TYPE" "PI15 WILD-TYPE" "PI15 WILD-TYPE" "PI15 WILD-TYPE" 
    TCGA-05-5429     TCGA-05-5715     TCGA-35-3615     TCGA-35-4122 
"PI15 WILD-TYPE" "PI15 WILD-TYPE" "PI15 WILD-TYPE" "PI15 WILD-TYPE" 
    TCGA-35-4123     TCGA-35-5375     TCGA-38-4625     TCGA-38-4626 
"PI15 WILD-TYPE" "PI15 WILD-TYPE" "PI15 WILD-TYPE" "PI15 WILD-TYPE" 
    TCGA-38-4627     TCGA-38-4628     TCGA-38-4629     TCGA-38-4630 
"PI15 WILD-TYPE" "PI15 WILD-TYPE" "PI15 WILD-TYPE" "PI15 WILD-TYPE" 
    TCGA-38-4631     TCGA-38-4632     TCGA-38-6178     TCGA-44-2655 
"PI15 WILD-TYPE" "PI15 WILD-TYPE" "PI15 WILD-TYPE" "PI15 WILD-TYPE" 
    TCGA-44-2656     TCGA-44-2657     TCGA-44-2659     TCGA-44-2661 
"PI15 WILD-TYPE" "PI15 WILD-TYPE" "PI15 WILD-TYPE" "PI15 WILD-TYPE" 
    TCGA-44-2662     TCGA-44-2665     TCGA-44-2666     TCGA-44-2668 
"PI15 WILD-TYPE" "PI15 WILD-TYPE" "PI15 WILD-TYPE" "PI15 WILD-TYPE" 
    TCGA-44-3396     TCGA-44-3398     TCGA-44-3918     TCGA-44-3919 
"PI15 WILD-TYPE" "PI15 WILD-TYPE" "PI15 WILD-TYPE" "PI15 WILD-TYPE" 
    TCGA-44-4112     TCGA-44-5643     TCGA-44-5645     TCGA-44-6144 
"PI15 WILD-TYPE" "PI15 WILD-TYPE" "PI15 WILD-TYPE" "PI15 WILD-TYPE" 
    TCGA-44-6145     TCGA-44-6146     TCGA-44-6147     TCGA-44-6148 
"PI15 WILD-TYPE" "PI15 WILD-TYPE" "PI15 WILD-TYPE" "PI15 WILD-TYPE" 
    TCGA-44-6774     TCGA-44-6775     TCGA-44-6776     TCGA-44-6777 
"PI15 WILD-TYPE" "PI15 WILD-TYPE" "PI15 WILD-TYPE" "PI15 WILD-TYPE" 
    TCGA-44-6778     TCGA-44-6779     TCGA-49-4486     TCGA-49-4487 
"PI15 WILD-TYPE" "PI15 WILD-TYPE" "PI15 WILD-TYPE" "PI15 WILD-TYPE" 
    TCGA-49-4488     TCGA-49-4490     TCGA-49-4494     TCGA-49-4501 
"PI15 WILD-TYPE" "PI15 WILD-TYPE" "PI15 WILD-TYPE" "PI15 WILD-TYPE" 
    TCGA-49-4505     TCGA-49-4506     TCGA-49-4507     TCGA-49-4510 
"PI15 WILD-TYPE" "PI15 WILD-TYPE" "PI15 WILD-TYPE" "PI15 WILD-TYPE" 
    TCGA-49-4512     TCGA-49-4514     TCGA-49-6742     TCGA-49-6743 
"PI15 WILD-TYPE" "PI15 WILD-TYPE" "PI15 WILD-TYPE" "PI15 WILD-TYPE" 
    TCGA-49-6744     TCGA-49-6745     TCGA-50-5044     TCGA-50-5045 
"PI15 WILD-TYPE" "PI15 WILD-TYPE" "PI15 WILD-TYPE" "PI15 WILD-TYPE" 
    TCGA-50-5049     TCGA-50-5051     TCGA-50-5055     TCGA-50-5066 
"PI15 WILD-TYPE" "PI15 WILD-TYPE" "PI15 WILD-TYPE" "PI15 WILD-TYPE" 
    TCGA-50-5068     TCGA-50-5072     TCGA-50-5930     TCGA-50-5931 
"PI15 WILD-TYPE" "PI15 WILD-TYPE" "PI15 WILD-TYPE" "PI15 WILD-TYPE" 
    TCGA-50-5932     TCGA-50-5933     TCGA-50-5935     TCGA-50-5936 
"PI15 WILD-TYPE" "PI15 WILD-TYPE" "PI15 WILD-TYPE" "PI15 WILD-TYPE" 
    TCGA-50-5939     TCGA-50-5941     TCGA-50-5942     TCGA-50-5944 
"PI15 WILD-TYPE" "PI15 WILD-TYPE" "PI15 WILD-TYPE" "PI15 WILD-TYPE" 
    TCGA-50-5946     TCGA-50-6590     TCGA-50-6591     TCGA-50-6592 
"PI15 WILD-TYPE" "PI15 WILD-TYPE" "PI15 WILD-TYPE" "PI15 WILD-TYPE" 
    TCGA-50-6593     TCGA-50-6594     TCGA-50-6595     TCGA-50-6597 
"PI15 WILD-TYPE" "PI15 WILD-TYPE" "PI15 WILD-TYPE" "PI15 WILD-TYPE" 
    TCGA-55-1592     TCGA-55-1594     TCGA-55-1595     TCGA-55-1596 
"PI15 WILD-TYPE"   "PI15 MUTATED"   "PI15 MUTATED" "PI15 WILD-TYPE" 
    TCGA-55-5899     TCGA-55-6543     TCGA-55-6642     TCGA-55-6712 
"PI15 WILD-TYPE" "PI15 WILD-TYPE" "PI15 WILD-TYPE" "PI15 WILD-TYPE" 
    TCGA-64-1676     TCGA-64-1677     TCGA-64-1678     TCGA-64-1680 
"PI15 WILD-TYPE" "PI15 WILD-TYPE"   "PI15 MUTATED" "PI15 WILD-TYPE" 
    TCGA-64-5774     TCGA-64-5775     TCGA-64-5778     TCGA-64-5779 
"PI15 WILD-TYPE" "PI15 WILD-TYPE" "PI15 WILD-TYPE" "PI15 WILD-TYPE" 
    TCGA-64-5781     TCGA-64-5815     TCGA-67-3770     TCGA-67-3771 
"PI15 WILD-TYPE" "PI15 WILD-TYPE" "PI15 WILD-TYPE" "PI15 WILD-TYPE" 
    TCGA-67-3772     TCGA-67-3773     TCGA-67-3774     TCGA-67-6215 
"PI15 WILD-TYPE" "PI15 WILD-TYPE" "PI15 WILD-TYPE" "PI15 WILD-TYPE" 
    TCGA-67-6216     TCGA-67-6217     TCGA-71-6725     TCGA-73-4658 
"PI15 WILD-TYPE" "PI15 WILD-TYPE" "PI15 WILD-TYPE" "PI15 WILD-TYPE" 
    TCGA-73-4659     TCGA-73-4662     TCGA-73-4666     TCGA-73-4668 
"PI15 WILD-TYPE" "PI15 WILD-TYPE" "PI15 WILD-TYPE" "PI15 WILD-TYPE" 
    TCGA-73-4670     TCGA-73-4675     TCGA-73-4676     TCGA-73-4677 
"PI15 WILD-TYPE" "PI15 WILD-TYPE" "PI15 WILD-TYPE" "PI15 WILD-TYPE" 
    TCGA-91-6828     TCGA-91-6829     TCGA-91-6831     TCGA-91-6835 
  "PI15 MUTATED" "PI15 WILD-TYPE" "PI15 WILD-TYPE" "PI15 WILD-TYPE" 
    TCGA-91-6836 
  "PI15 MUTATED" 
    TCGA-05-4249     TCGA-05-4250     TCGA-05-4382     TCGA-05-4384 
"PI15 WILD-TYPE" "PI15 WILD-TYPE" "PI15 WILD-TYPE" "PI15 WILD-TYPE" 
    TCGA-05-4390     TCGA-05-4396     TCGA-05-4397     TCGA-05-4398 
"PI15 WILD-TYPE"   "PI15 MUTATED" "PI15 WILD-TYPE" "PI15 WILD-TYPE" 
    TCGA-05-4402     TCGA-05-4405     TCGA-05-4415     TCGA-05-4417 
"PI15 WILD-TYPE" "PI15 WILD-TYPE" "PI15 WILD-TYPE" "PI15 WILD-TYPE" 
    TCGA-05-4418     TCGA-05-4420     TCGA-05-4424     TCGA-05-4426 
"PI15 WILD-TYPE" "PI15 WILD-TYPE" "PI15 WILD-TYPE" "PI15 WILD-TYPE" 
    TCGA-05-4427     TCGA-05-4430     TCGA-05-4432     TCGA-05-4433 
  "PI15 MUTATED" "PI15 WILD-TYPE" "PI15 WILD-TYPE" "PI15 WILD-TYPE" 
    TCGA-05-4434     TCGA-05-5420     TCGA-05-5423     TCGA-05-5425 
"PI15 WILD-TYPE" "PI15 WILD-TYPE" "PI15 WILD-TYPE" "PI15 WILD-TYPE" 
    TCGA-05-5429     TCGA-05-5715     TCGA-35-3615     TCGA-35-4122 
"PI15 WILD-TYPE" "PI15 WILD-TYPE" "PI15 WILD-TYPE" "PI15 WILD-TYPE" 
    TCGA-35-4123     TCGA-35-5375     TCGA-38-4625     TCGA-38-4626 
"PI15 WILD-TYPE" "PI15 WILD-TYPE" "PI15 WILD-TYPE" "PI15 WILD-TYPE" 
    TCGA-38-4627     TCGA-38-4628     TCGA-38-4629     TCGA-38-4630 
"PI15 WILD-TYPE" "PI15 WILD-TYPE" "PI15 WILD-TYPE" "PI15 WILD-TYPE" 
    TCGA-38-4631     TCGA-38-4632     TCGA-38-6178     TCGA-44-2655 
"PI15 WILD-TYPE" "PI15 WILD-TYPE" "PI15 WILD-TYPE" "PI15 WILD-TYPE" 
    TCGA-44-2656     TCGA-44-2657     TCGA-44-2659     TCGA-44-2661 
"PI15 WILD-TYPE" "PI15 WILD-TYPE" "PI15 WILD-TYPE" "PI15 WILD-TYPE" 
    TCGA-44-2662     TCGA-44-2665     TCGA-44-2666     TCGA-44-2668 
"PI15 WILD-TYPE" "PI15 WILD-TYPE" "PI15 WILD-TYPE" "PI15 WILD-TYPE" 
    TCGA-44-3396     TCGA-44-3398     TCGA-44-3918     TCGA-44-3919 
"PI15 WILD-TYPE" "PI15 WILD-TYPE" "PI15 WILD-TYPE" "PI15 WILD-TYPE" 
    TCGA-44-4112     TCGA-44-5643     TCGA-44-5645     TCGA-44-6144 
"PI15 WILD-TYPE" "PI15 WILD-TYPE" "PI15 WILD-TYPE" "PI15 WILD-TYPE" 
    TCGA-44-6145     TCGA-44-6146     TCGA-44-6147     TCGA-44-6148 
"PI15 WILD-TYPE" "PI15 WILD-TYPE" "PI15 WILD-TYPE" "PI15 WILD-TYPE" 
    TCGA-44-6774     TCGA-44-6775     TCGA-44-6776     TCGA-44-6777 
"PI15 WILD-TYPE" "PI15 WILD-TYPE" "PI15 WILD-TYPE" "PI15 WILD-TYPE" 
    TCGA-44-6778     TCGA-44-6779     TCGA-49-4486     TCGA-49-4487 
"PI15 WILD-TYPE" "PI15 WILD-TYPE" "PI15 WILD-TYPE" "PI15 WILD-TYPE" 
    TCGA-49-4488     TCGA-49-4490     TCGA-49-4494     TCGA-49-4501 
"PI15 WILD-TYPE" "PI15 WILD-TYPE" "PI15 WILD-TYPE" "PI15 WILD-TYPE" 
    TCGA-49-4505     TCGA-49-4506     TCGA-49-4507     TCGA-49-4510 
"PI15 WILD-TYPE" "PI15 WILD-TYPE" "PI15 WILD-TYPE" "PI15 WILD-TYPE" 
    TCGA-49-4512     TCGA-49-4514     TCGA-49-6742     TCGA-49-6743 
"PI15 WILD-TYPE" "PI15 WILD-TYPE" "PI15 WILD-TYPE" "PI15 WILD-TYPE" 
    TCGA-49-6744     TCGA-49-6745     TCGA-50-5044     TCGA-50-5045 
"PI15 WILD-TYPE" "PI15 WILD-TYPE" "PI15 WILD-TYPE" "PI15 WILD-TYPE" 
    TCGA-50-5049     TCGA-50-5051     TCGA-50-5055     TCGA-50-5066 
"PI15 WILD-TYPE" "PI15 WILD-TYPE" "PI15 WILD-TYPE" "PI15 WILD-TYPE" 
    TCGA-50-5068     TCGA-50-5072     TCGA-50-5930     TCGA-50-5931 
"PI15 WILD-TYPE" "PI15 WILD-TYPE" "PI15 WILD-TYPE" "PI15 WILD-TYPE" 
    TCGA-50-5932     TCGA-50-5933     TCGA-50-5935     TCGA-50-5936 
"PI15 WILD-TYPE" "PI15 WILD-TYPE" "PI15 WILD-TYPE" "PI15 WILD-TYPE" 
    TCGA-50-5939     TCGA-50-5941     TCGA-50-5942     TCGA-50-5944 
"PI15 WILD-TYPE" "PI15 WILD-TYPE" "PI15 WILD-TYPE" "PI15 WILD-TYPE" 
    TCGA-50-5946     TCGA-50-6590     TCGA-50-6591     TCGA-50-6592 
"PI15 WILD-TYPE" "PI15 WILD-TYPE" "PI15 WILD-TYPE" "PI15 WILD-TYPE" 
    TCGA-50-6593     TCGA-50-6594     TCGA-50-6595     TCGA-50-6597 
"PI15 WILD-TYPE" "PI15 WILD-TYPE" "PI15 WILD-TYPE" "PI15 WILD-TYPE" 
    TCGA-55-1592     TCGA-55-1594     TCGA-55-1595     TCGA-55-1596 
"PI15 WILD-TYPE"   "PI15 MUTATED"   "PI15 MUTATED" "PI15 WILD-TYPE" 
    TCGA-55-5899     TCGA-55-6543     TCGA-55-6642     TCGA-55-6712 
"PI15 WILD-TYPE" "PI15 WILD-TYPE" "PI15 WILD-TYPE" "PI15 WILD-TYPE" 
    TCGA-64-1676     TCGA-64-1677     TCGA-64-1678     TCGA-64-1680 
"PI15 WILD-TYPE" "PI15 WILD-TYPE"   "PI15 MUTATED" "PI15 WILD-TYPE" 
    TCGA-64-5774     TCGA-64-5775     TCGA-64-5778     TCGA-64-5779 
"PI15 WILD-TYPE" "PI15 WILD-TYPE" "PI15 WILD-TYPE" "PI15 WILD-TYPE" 
    TCGA-64-5781     TCGA-64-5815     TCGA-67-3770     TCGA-67-3771 
"PI15 WILD-TYPE" "PI15 WILD-TYPE" "PI15 WILD-TYPE" "PI15 WILD-TYPE" 
    TCGA-67-3772     TCGA-67-3773     TCGA-67-3774     TCGA-67-6215 
"PI15 WILD-TYPE" "PI15 WILD-TYPE" "PI15 WILD-TYPE" "PI15 WILD-TYPE" 
    TCGA-67-6216     TCGA-67-6217     TCGA-71-6725     TCGA-73-4658 
"PI15 WILD-TYPE" "PI15 WILD-TYPE" "PI15 WILD-TYPE" "PI15 WILD-TYPE" 
    TCGA-73-4659     TCGA-73-4662     TCGA-73-4666     TCGA-73-4668 
"PI15 WILD-TYPE" "PI15 WILD-TYPE" "PI15 WILD-TYPE" "PI15 WILD-TYPE" 
    TCGA-73-4670     TCGA-73-4675     TCGA-73-4676     TCGA-73-4677 
"PI15 WILD-TYPE" "PI15 WILD-TYPE" "PI15 WILD-TYPE" "PI15 WILD-TYPE" 
    TCGA-91-6828     TCGA-91-6829     TCGA-91-6831     TCGA-91-6835 
  "PI15 MUTATED" "PI15 WILD-TYPE" "PI15 WILD-TYPE" "PI15 WILD-TYPE" 
    TCGA-91-6836 
  "PI15 MUTATED" 
[1] "hr=" "2.9"
D149V2, continuous
D149V3, binary
[1] "tbl2"
                cls
clus             [,1] [,2]
  PI15 MUTATED      4    3
  PI15 WILD-TYPE   89   76
        clus
vv       PI15 MUTATED PI15 WILD-TYPE
  FEMALE            4             89
  MALE              3             76
D149V4, continuous
D149V5, multiclass
D149V6, multiclass
    clus
vv   PI15 MUTATED PI15 WILD-TYPE
  T1            2             39
  T2            4            104
  T3            0             14
  T4            1              7
D149V7, multiclass
       clus
vv      PI15 MUTATED PI15 WILD-TYPE
  N0               4             91
  N1               2             35
  N2+N3            1             34
D149V8, multiclass
    clus
vv   PI15 MUTATED PI15 WILD-TYPE
  M0            5            132
  M1            0              9
  MX            2             20
D149V9, multiclass
     clus
vv    PI15 MUTATED PI15 WILD-TYPE
  I              3             85
  II             2             31
  III            2             37
  IV             0              9
D149V10, binary
[1] "tbl2"
                cls
clus             [,1] [,2]
  PI15 MUTATED      0    7
  PI15 WILD-TYPE   16  149
     clus
vv    PI15 MUTATED PI15 WILD-TYPE
  NO             0             16
  YES            7            149
D149V11, continuous
D149V12, continuous
D149V13, multiclass
                                             clus
vv                                            PI15 MUTATED PI15 WILD-TYPE
  CURRENT REFORMED SMOKER FOR < OR = 15 YEARS            2             60
  CURRENT REFORMED SMOKER FOR > 15 YEARS                 3             43
  CURRENT SMOKER                                         2             26
  LIFELONG NON-SMOKER                                    0             24
D149V14, continuous

Clustering(150) Variable = DYTN MUTATION ANALYSIS
D150V1, survival
                sevent
clus2             0  1
  DYTN MUTATED    6  3
  DYTN WILD-TYPE 93 47
  DYTN MUTATED DYTN WILD-TYPE 
             9            140 
  DYTN MUTATED DYTN WILD-TYPE 
             3             47 
$`DYTN MUTATED`
TCGA-05-4390 TCGA-05-4417 TCGA-38-4626 TCGA-44-2666 TCGA-44-6779 TCGA-55-1592 
       37.02        14.93        85.32         3.19        16.41        23.05 
TCGA-64-1676 TCGA-64-5781 TCGA-91-6831 
       56.81        39.52         1.28 

$`DYTN WILD-TYPE`
TCGA-05-4249 TCGA-05-4250 TCGA-05-4382 TCGA-05-4384 TCGA-05-4396 TCGA-05-4397 
       38.07         3.98        19.92        14.01         9.96        24.03 
TCGA-05-4398 TCGA-05-4402 TCGA-05-4405 TCGA-05-4415 TCGA-05-4418 TCGA-05-4420 
       47.05         8.02        20.05         2.96         8.98        29.95 
TCGA-05-4424 TCGA-05-4426 TCGA-05-4427 TCGA-05-4430 TCGA-05-4432 TCGA-05-4433 
       30.02        26.01        26.01        25.02        25.02        24.00 
TCGA-05-4434 TCGA-05-5420 TCGA-05-5423 TCGA-05-5425 TCGA-05-5429 TCGA-05-5715 
       15.02         1.02         4.96         2.96         0.99         2.04 
TCGA-35-3615 TCGA-35-4122 TCGA-35-4123 TCGA-35-5375 TCGA-38-4625 TCGA-38-4627 
        0.46         7.36         5.95         8.68        47.61        37.71 
TCGA-38-4628 TCGA-38-4629 TCGA-38-4630 TCGA-38-4631 TCGA-38-4632 TCGA-38-6178 
       49.02        28.37        35.28        11.64        44.61         5.19 
TCGA-44-2655 TCGA-44-2656 TCGA-44-2657 TCGA-44-2659 TCGA-44-2661 TCGA-44-2662 
       18.87        19.10        13.15        17.39         3.39        15.78 
TCGA-44-2665 TCGA-44-2668 TCGA-44-3396 TCGA-44-3398 TCGA-44-3918 TCGA-44-3919 
       13.15         8.09        10.22         8.32         6.44         6.21 
TCGA-44-4112 TCGA-44-5643 TCGA-44-5645 TCGA-44-6144 TCGA-44-6145 TCGA-44-6146 
        4.60         3.48         6.84         0.30         3.35         9.93 
TCGA-44-6147 TCGA-44-6148 TCGA-44-6774 TCGA-44-6775 TCGA-44-6776 TCGA-44-6777 
        7.76         3.12         5.42         2.70        63.72        32.45 
TCGA-44-6778 TCGA-49-4486 TCGA-49-4487 TCGA-49-4488 TCGA-49-4490 TCGA-49-4494 
       36.49        76.21        28.11        28.57        12.66        35.54 
TCGA-49-4501 TCGA-49-4505 TCGA-49-4506 TCGA-49-4507 TCGA-49-4510 TCGA-49-4512 
       46.72        14.07        32.84         8.81        29.46        29.75 
TCGA-49-4514 TCGA-49-6742 TCGA-49-6743 TCGA-49-6744 TCGA-49-6745 TCGA-50-5044 
       43.20        15.02        12.13        12.99         4.93        20.48 
TCGA-50-5045 TCGA-50-5049 TCGA-50-5051 TCGA-50-5055 TCGA-50-5066 TCGA-50-5068 
       71.47        48.82        14.96        25.81         9.76        49.28 
TCGA-50-5072 TCGA-50-5930 TCGA-50-5931 TCGA-50-5932 TCGA-50-5933 TCGA-50-5935 
        8.05         9.27         8.78        35.87        77.88        21.47 
TCGA-50-5936 TCGA-50-5939 TCGA-50-5941 TCGA-50-5942 TCGA-50-5944 TCGA-50-5946 
        8.45        15.12         9.37         4.44        12.26        11.47 
TCGA-50-6590 TCGA-50-6591 TCGA-50-6592 TCGA-50-6593 TCGA-50-6594 TCGA-50-6595 
       42.31         3.88        25.51        11.05        12.16         6.21 
TCGA-50-6597 TCGA-55-1594 TCGA-55-1595 TCGA-55-1596 TCGA-55-5899 TCGA-55-6543 
       33.37        38.73        48.62        45.17         2.86         0.07 
TCGA-55-6642 TCGA-55-6712 TCGA-64-1677 TCGA-64-1678 TCGA-64-1680 TCGA-64-5774 
       32.61         0.79        20.65        39.09        37.02        83.84 
TCGA-64-5775 TCGA-64-5778 TCGA-64-5779 TCGA-64-5815 TCGA-67-3770 TCGA-67-3771 
        0.10        30.44        16.67         7.33         0.99         1.97 
TCGA-67-3772 TCGA-67-3773 TCGA-67-3774 TCGA-67-6215 TCGA-67-6216 TCGA-67-6217 
        0.59         2.04         0.59         0.89         0.69        13.87 
TCGA-71-6725 TCGA-73-4658 TCGA-73-4659 TCGA-73-4662 TCGA-73-4666 TCGA-73-4668 
        2.01        52.57        23.38        29.95        20.28        15.35 
TCGA-73-4670 TCGA-73-4675 TCGA-73-4676 TCGA-73-4677 TCGA-91-6828 TCGA-91-6829 
        0.46         1.32         4.01         1.25         1.22        41.33 
TCGA-91-6835 TCGA-91-6836 
        1.15         0.36 

  DYTN MUTATED DYTN WILD-TYPE 
          1.28           0.07 
  DYTN MUTATED DYTN WILD-TYPE 
         85.32          83.84 
  DYTN MUTATED DYTN WILD-TYPE 
         23.05          13.07 
[1] "1.3 - 85.3 (23.1)" "0.1 - 83.8 (13.1)"
    TCGA-05-4249     TCGA-05-4250     TCGA-05-4382     TCGA-05-4384 
"DYTN WILD-TYPE" "DYTN WILD-TYPE" "DYTN WILD-TYPE" "DYTN WILD-TYPE" 
    TCGA-05-4390     TCGA-05-4396     TCGA-05-4397     TCGA-05-4398 
  "DYTN MUTATED" "DYTN WILD-TYPE" "DYTN WILD-TYPE" "DYTN WILD-TYPE" 
    TCGA-05-4402     TCGA-05-4405     TCGA-05-4415     TCGA-05-4417 
"DYTN WILD-TYPE" "DYTN WILD-TYPE" "DYTN WILD-TYPE"   "DYTN MUTATED" 
    TCGA-05-4418     TCGA-05-4420     TCGA-05-4424     TCGA-05-4426 
"DYTN WILD-TYPE" "DYTN WILD-TYPE" "DYTN WILD-TYPE" "DYTN WILD-TYPE" 
    TCGA-05-4427     TCGA-05-4430     TCGA-05-4432     TCGA-05-4433 
"DYTN WILD-TYPE" "DYTN WILD-TYPE" "DYTN WILD-TYPE" "DYTN WILD-TYPE" 
    TCGA-05-4434     TCGA-05-5420     TCGA-05-5423     TCGA-05-5425 
"DYTN WILD-TYPE" "DYTN WILD-TYPE" "DYTN WILD-TYPE" "DYTN WILD-TYPE" 
    TCGA-05-5429     TCGA-05-5715     TCGA-35-3615     TCGA-35-4122 
"DYTN WILD-TYPE" "DYTN WILD-TYPE" "DYTN WILD-TYPE" "DYTN WILD-TYPE" 
    TCGA-35-4123     TCGA-35-5375     TCGA-38-4625     TCGA-38-4626 
"DYTN WILD-TYPE" "DYTN WILD-TYPE" "DYTN WILD-TYPE"   "DYTN MUTATED" 
    TCGA-38-4627     TCGA-38-4628     TCGA-38-4629     TCGA-38-4630 
"DYTN WILD-TYPE" "DYTN WILD-TYPE" "DYTN WILD-TYPE" "DYTN WILD-TYPE" 
    TCGA-38-4631     TCGA-38-4632     TCGA-38-6178     TCGA-44-2655 
"DYTN WILD-TYPE" "DYTN WILD-TYPE" "DYTN WILD-TYPE" "DYTN WILD-TYPE" 
    TCGA-44-2656     TCGA-44-2657     TCGA-44-2659     TCGA-44-2661 
"DYTN WILD-TYPE" "DYTN WILD-TYPE" "DYTN WILD-TYPE" "DYTN WILD-TYPE" 
    TCGA-44-2662     TCGA-44-2665     TCGA-44-2666     TCGA-44-2668 
"DYTN WILD-TYPE" "DYTN WILD-TYPE"   "DYTN MUTATED" "DYTN WILD-TYPE" 
    TCGA-44-3396     TCGA-44-3398     TCGA-44-3918     TCGA-44-3919 
"DYTN WILD-TYPE" "DYTN WILD-TYPE" "DYTN WILD-TYPE" "DYTN WILD-TYPE" 
    TCGA-44-4112     TCGA-44-5643     TCGA-44-5645     TCGA-44-6144 
"DYTN WILD-TYPE" "DYTN WILD-TYPE" "DYTN WILD-TYPE" "DYTN WILD-TYPE" 
    TCGA-44-6145     TCGA-44-6146     TCGA-44-6147     TCGA-44-6148 
"DYTN WILD-TYPE" "DYTN WILD-TYPE" "DYTN WILD-TYPE" "DYTN WILD-TYPE" 
    TCGA-44-6774     TCGA-44-6775     TCGA-44-6776     TCGA-44-6777 
"DYTN WILD-TYPE" "DYTN WILD-TYPE" "DYTN WILD-TYPE" "DYTN WILD-TYPE" 
    TCGA-44-6778     TCGA-44-6779     TCGA-49-4486     TCGA-49-4487 
"DYTN WILD-TYPE"   "DYTN MUTATED" "DYTN WILD-TYPE" "DYTN WILD-TYPE" 
    TCGA-49-4488     TCGA-49-4490     TCGA-49-4494     TCGA-49-4501 
"DYTN WILD-TYPE" "DYTN WILD-TYPE" "DYTN WILD-TYPE" "DYTN WILD-TYPE" 
    TCGA-49-4505     TCGA-49-4506     TCGA-49-4507     TCGA-49-4510 
"DYTN WILD-TYPE" "DYTN WILD-TYPE" "DYTN WILD-TYPE" "DYTN WILD-TYPE" 
    TCGA-49-4512     TCGA-49-4514     TCGA-49-6742     TCGA-49-6743 
"DYTN WILD-TYPE" "DYTN WILD-TYPE" "DYTN WILD-TYPE" "DYTN WILD-TYPE" 
    TCGA-49-6744     TCGA-49-6745     TCGA-50-5044     TCGA-50-5045 
"DYTN WILD-TYPE" "DYTN WILD-TYPE" "DYTN WILD-TYPE" "DYTN WILD-TYPE" 
    TCGA-50-5049     TCGA-50-5051     TCGA-50-5055     TCGA-50-5066 
"DYTN WILD-TYPE" "DYTN WILD-TYPE" "DYTN WILD-TYPE" "DYTN WILD-TYPE" 
    TCGA-50-5068     TCGA-50-5072     TCGA-50-5930     TCGA-50-5931 
"DYTN WILD-TYPE" "DYTN WILD-TYPE" "DYTN WILD-TYPE" "DYTN WILD-TYPE" 
    TCGA-50-5932     TCGA-50-5933     TCGA-50-5935     TCGA-50-5936 
"DYTN WILD-TYPE" "DYTN WILD-TYPE" "DYTN WILD-TYPE" "DYTN WILD-TYPE" 
    TCGA-50-5939     TCGA-50-5941     TCGA-50-5942     TCGA-50-5944 
"DYTN WILD-TYPE" "DYTN WILD-TYPE" "DYTN WILD-TYPE" "DYTN WILD-TYPE" 
    TCGA-50-5946     TCGA-50-6590     TCGA-50-6591     TCGA-50-6592 
"DYTN WILD-TYPE" "DYTN WILD-TYPE" "DYTN WILD-TYPE" "DYTN WILD-TYPE" 
    TCGA-50-6593     TCGA-50-6594     TCGA-50-6595     TCGA-50-6597 
"DYTN WILD-TYPE" "DYTN WILD-TYPE" "DYTN WILD-TYPE" "DYTN WILD-TYPE" 
    TCGA-55-1592     TCGA-55-1594     TCGA-55-1595     TCGA-55-1596 
  "DYTN MUTATED" "DYTN WILD-TYPE" "DYTN WILD-TYPE" "DYTN WILD-TYPE" 
    TCGA-55-5899     TCGA-55-6543     TCGA-55-6642     TCGA-55-6712 
"DYTN WILD-TYPE" "DYTN WILD-TYPE" "DYTN WILD-TYPE" "DYTN WILD-TYPE" 
    TCGA-64-1676     TCGA-64-1677     TCGA-64-1678     TCGA-64-1680 
  "DYTN MUTATED" "DYTN WILD-TYPE" "DYTN WILD-TYPE" "DYTN WILD-TYPE" 
    TCGA-64-5774     TCGA-64-5775     TCGA-64-5778     TCGA-64-5779 
"DYTN WILD-TYPE" "DYTN WILD-TYPE" "DYTN WILD-TYPE" "DYTN WILD-TYPE" 
    TCGA-64-5781     TCGA-64-5815     TCGA-67-3770     TCGA-67-3771 
  "DYTN MUTATED" "DYTN WILD-TYPE" "DYTN WILD-TYPE" "DYTN WILD-TYPE" 
    TCGA-67-3772     TCGA-67-3773     TCGA-67-3774     TCGA-67-6215 
"DYTN WILD-TYPE" "DYTN WILD-TYPE" "DYTN WILD-TYPE" "DYTN WILD-TYPE" 
    TCGA-67-6216     TCGA-67-6217     TCGA-71-6725     TCGA-73-4658 
"DYTN WILD-TYPE" "DYTN WILD-TYPE" "DYTN WILD-TYPE" "DYTN WILD-TYPE" 
    TCGA-73-4659     TCGA-73-4662     TCGA-73-4666     TCGA-73-4668 
"DYTN WILD-TYPE" "DYTN WILD-TYPE" "DYTN WILD-TYPE" "DYTN WILD-TYPE" 
    TCGA-73-4670     TCGA-73-4675     TCGA-73-4676     TCGA-73-4677 
"DYTN WILD-TYPE" "DYTN WILD-TYPE" "DYTN WILD-TYPE" "DYTN WILD-TYPE" 
    TCGA-91-6828     TCGA-91-6829     TCGA-91-6831     TCGA-91-6835 
"DYTN WILD-TYPE" "DYTN WILD-TYPE"   "DYTN MUTATED" "DYTN WILD-TYPE" 
    TCGA-91-6836 
"DYTN WILD-TYPE" 
    TCGA-05-4249     TCGA-05-4250     TCGA-05-4382     TCGA-05-4384 
"DYTN WILD-TYPE" "DYTN WILD-TYPE" "DYTN WILD-TYPE" "DYTN WILD-TYPE" 
    TCGA-05-4390     TCGA-05-4396     TCGA-05-4397     TCGA-05-4398 
  "DYTN MUTATED" "DYTN WILD-TYPE" "DYTN WILD-TYPE" "DYTN WILD-TYPE" 
    TCGA-05-4402     TCGA-05-4405     TCGA-05-4415     TCGA-05-4417 
"DYTN WILD-TYPE" "DYTN WILD-TYPE" "DYTN WILD-TYPE"   "DYTN MUTATED" 
    TCGA-05-4418     TCGA-05-4420     TCGA-05-4424     TCGA-05-4426 
"DYTN WILD-TYPE" "DYTN WILD-TYPE" "DYTN WILD-TYPE" "DYTN WILD-TYPE" 
    TCGA-05-4427     TCGA-05-4430     TCGA-05-4432     TCGA-05-4433 
"DYTN WILD-TYPE" "DYTN WILD-TYPE" "DYTN WILD-TYPE" "DYTN WILD-TYPE" 
    TCGA-05-4434     TCGA-05-5420     TCGA-05-5423     TCGA-05-5425 
"DYTN WILD-TYPE" "DYTN WILD-TYPE" "DYTN WILD-TYPE" "DYTN WILD-TYPE" 
    TCGA-05-5429     TCGA-05-5715     TCGA-35-3615     TCGA-35-4122 
"DYTN WILD-TYPE" "DYTN WILD-TYPE" "DYTN WILD-TYPE" "DYTN WILD-TYPE" 
    TCGA-35-4123     TCGA-35-5375     TCGA-38-4625     TCGA-38-4626 
"DYTN WILD-TYPE" "DYTN WILD-TYPE" "DYTN WILD-TYPE"   "DYTN MUTATED" 
    TCGA-38-4627     TCGA-38-4628     TCGA-38-4629     TCGA-38-4630 
"DYTN WILD-TYPE" "DYTN WILD-TYPE" "DYTN WILD-TYPE" "DYTN WILD-TYPE" 
    TCGA-38-4631     TCGA-38-4632     TCGA-38-6178     TCGA-44-2655 
"DYTN WILD-TYPE" "DYTN WILD-TYPE" "DYTN WILD-TYPE" "DYTN WILD-TYPE" 
    TCGA-44-2656     TCGA-44-2657     TCGA-44-2659     TCGA-44-2661 
"DYTN WILD-TYPE" "DYTN WILD-TYPE" "DYTN WILD-TYPE" "DYTN WILD-TYPE" 
    TCGA-44-2662     TCGA-44-2665     TCGA-44-2666     TCGA-44-2668 
"DYTN WILD-TYPE" "DYTN WILD-TYPE"   "DYTN MUTATED" "DYTN WILD-TYPE" 
    TCGA-44-3396     TCGA-44-3398     TCGA-44-3918     TCGA-44-3919 
"DYTN WILD-TYPE" "DYTN WILD-TYPE" "DYTN WILD-TYPE" "DYTN WILD-TYPE" 
    TCGA-44-4112     TCGA-44-5643     TCGA-44-5645     TCGA-44-6144 
"DYTN WILD-TYPE" "DYTN WILD-TYPE" "DYTN WILD-TYPE" "DYTN WILD-TYPE" 
    TCGA-44-6145     TCGA-44-6146     TCGA-44-6147     TCGA-44-6148 
"DYTN WILD-TYPE" "DYTN WILD-TYPE" "DYTN WILD-TYPE" "DYTN WILD-TYPE" 
    TCGA-44-6774     TCGA-44-6775     TCGA-44-6776     TCGA-44-6777 
"DYTN WILD-TYPE" "DYTN WILD-TYPE" "DYTN WILD-TYPE" "DYTN WILD-TYPE" 
    TCGA-44-6778     TCGA-44-6779     TCGA-49-4486     TCGA-49-4487 
"DYTN WILD-TYPE"   "DYTN MUTATED" "DYTN WILD-TYPE" "DYTN WILD-TYPE" 
    TCGA-49-4488     TCGA-49-4490     TCGA-49-4494     TCGA-49-4501 
"DYTN WILD-TYPE" "DYTN WILD-TYPE" "DYTN WILD-TYPE" "DYTN WILD-TYPE" 
    TCGA-49-4505     TCGA-49-4506     TCGA-49-4507     TCGA-49-4510 
"DYTN WILD-TYPE" "DYTN WILD-TYPE" "DYTN WILD-TYPE" "DYTN WILD-TYPE" 
    TCGA-49-4512     TCGA-49-4514     TCGA-49-6742     TCGA-49-6743 
"DYTN WILD-TYPE" "DYTN WILD-TYPE" "DYTN WILD-TYPE" "DYTN WILD-TYPE" 
    TCGA-49-6744     TCGA-49-6745     TCGA-50-5044     TCGA-50-5045 
"DYTN WILD-TYPE" "DYTN WILD-TYPE" "DYTN WILD-TYPE" "DYTN WILD-TYPE" 
    TCGA-50-5049     TCGA-50-5051     TCGA-50-5055     TCGA-50-5066 
"DYTN WILD-TYPE" "DYTN WILD-TYPE" "DYTN WILD-TYPE" "DYTN WILD-TYPE" 
    TCGA-50-5068     TCGA-50-5072     TCGA-50-5930     TCGA-50-5931 
"DYTN WILD-TYPE" "DYTN WILD-TYPE" "DYTN WILD-TYPE" "DYTN WILD-TYPE" 
    TCGA-50-5932     TCGA-50-5933     TCGA-50-5935     TCGA-50-5936 
"DYTN WILD-TYPE" "DYTN WILD-TYPE" "DYTN WILD-TYPE" "DYTN WILD-TYPE" 
    TCGA-50-5939     TCGA-50-5941     TCGA-50-5942     TCGA-50-5944 
"DYTN WILD-TYPE" "DYTN WILD-TYPE" "DYTN WILD-TYPE" "DYTN WILD-TYPE" 
    TCGA-50-5946     TCGA-50-6590     TCGA-50-6591     TCGA-50-6592 
"DYTN WILD-TYPE" "DYTN WILD-TYPE" "DYTN WILD-TYPE" "DYTN WILD-TYPE" 
    TCGA-50-6593     TCGA-50-6594     TCGA-50-6595     TCGA-50-6597 
"DYTN WILD-TYPE" "DYTN WILD-TYPE" "DYTN WILD-TYPE" "DYTN WILD-TYPE" 
    TCGA-55-1592     TCGA-55-1594     TCGA-55-1595     TCGA-55-1596 
  "DYTN MUTATED" "DYTN WILD-TYPE" "DYTN WILD-TYPE" "DYTN WILD-TYPE" 
    TCGA-55-5899     TCGA-55-6543     TCGA-55-6642     TCGA-55-6712 
"DYTN WILD-TYPE" "DYTN WILD-TYPE" "DYTN WILD-TYPE" "DYTN WILD-TYPE" 
    TCGA-64-1676     TCGA-64-1677     TCGA-64-1678     TCGA-64-1680 
  "DYTN MUTATED" "DYTN WILD-TYPE" "DYTN WILD-TYPE" "DYTN WILD-TYPE" 
    TCGA-64-5774     TCGA-64-5775     TCGA-64-5778     TCGA-64-5779 
"DYTN WILD-TYPE" "DYTN WILD-TYPE" "DYTN WILD-TYPE" "DYTN WILD-TYPE" 
    TCGA-64-5781     TCGA-64-5815     TCGA-67-3770     TCGA-67-3771 
  "DYTN MUTATED" "DYTN WILD-TYPE" "DYTN WILD-TYPE" "DYTN WILD-TYPE" 
    TCGA-67-3772     TCGA-67-3773     TCGA-67-3774     TCGA-67-6215 
"DYTN WILD-TYPE" "DYTN WILD-TYPE" "DYTN WILD-TYPE" "DYTN WILD-TYPE" 
    TCGA-67-6216     TCGA-67-6217     TCGA-71-6725     TCGA-73-4658 
"DYTN WILD-TYPE" "DYTN WILD-TYPE" "DYTN WILD-TYPE" "DYTN WILD-TYPE" 
    TCGA-73-4659     TCGA-73-4662     TCGA-73-4666     TCGA-73-4668 
"DYTN WILD-TYPE" "DYTN WILD-TYPE" "DYTN WILD-TYPE" "DYTN WILD-TYPE" 
    TCGA-73-4670     TCGA-73-4675     TCGA-73-4676     TCGA-73-4677 
"DYTN WILD-TYPE" "DYTN WILD-TYPE" "DYTN WILD-TYPE" "DYTN WILD-TYPE" 
    TCGA-91-6828     TCGA-91-6829     TCGA-91-6831     TCGA-91-6835 
"DYTN WILD-TYPE" "DYTN WILD-TYPE"   "DYTN MUTATED" "DYTN WILD-TYPE" 
    TCGA-91-6836 
"DYTN WILD-TYPE" 
    TCGA-05-4249     TCGA-05-4250     TCGA-05-4382     TCGA-05-4384 
"DYTN WILD-TYPE" "DYTN WILD-TYPE" "DYTN WILD-TYPE" "DYTN WILD-TYPE" 
    TCGA-05-4390     TCGA-05-4396     TCGA-05-4397     TCGA-05-4398 
  "DYTN MUTATED" "DYTN WILD-TYPE" "DYTN WILD-TYPE" "DYTN WILD-TYPE" 
    TCGA-05-4402     TCGA-05-4405     TCGA-05-4415     TCGA-05-4417 
"DYTN WILD-TYPE" "DYTN WILD-TYPE" "DYTN WILD-TYPE"   "DYTN MUTATED" 
    TCGA-05-4418     TCGA-05-4420     TCGA-05-4424     TCGA-05-4426 
"DYTN WILD-TYPE" "DYTN WILD-TYPE" "DYTN WILD-TYPE" "DYTN WILD-TYPE" 
    TCGA-05-4427     TCGA-05-4430     TCGA-05-4432     TCGA-05-4433 
"DYTN WILD-TYPE" "DYTN WILD-TYPE" "DYTN WILD-TYPE" "DYTN WILD-TYPE" 
    TCGA-05-4434     TCGA-05-5420     TCGA-05-5423     TCGA-05-5425 
"DYTN WILD-TYPE" "DYTN WILD-TYPE" "DYTN WILD-TYPE" "DYTN WILD-TYPE" 
    TCGA-05-5429     TCGA-05-5715     TCGA-35-3615     TCGA-35-4122 
"DYTN WILD-TYPE" "DYTN WILD-TYPE" "DYTN WILD-TYPE" "DYTN WILD-TYPE" 
    TCGA-35-4123     TCGA-35-5375     TCGA-38-4625     TCGA-38-4626 
"DYTN WILD-TYPE" "DYTN WILD-TYPE" "DYTN WILD-TYPE"   "DYTN MUTATED" 
    TCGA-38-4627     TCGA-38-4628     TCGA-38-4629     TCGA-38-4630 
"DYTN WILD-TYPE" "DYTN WILD-TYPE" "DYTN WILD-TYPE" "DYTN WILD-TYPE" 
    TCGA-38-4631     TCGA-38-4632     TCGA-38-6178     TCGA-44-2655 
"DYTN WILD-TYPE" "DYTN WILD-TYPE" "DYTN WILD-TYPE" "DYTN WILD-TYPE" 
    TCGA-44-2656     TCGA-44-2657     TCGA-44-2659     TCGA-44-2661 
"DYTN WILD-TYPE" "DYTN WILD-TYPE" "DYTN WILD-TYPE" "DYTN WILD-TYPE" 
    TCGA-44-2662     TCGA-44-2665     TCGA-44-2666     TCGA-44-2668 
"DYTN WILD-TYPE" "DYTN WILD-TYPE"   "DYTN MUTATED" "DYTN WILD-TYPE" 
    TCGA-44-3396     TCGA-44-3398     TCGA-44-3918     TCGA-44-3919 
"DYTN WILD-TYPE" "DYTN WILD-TYPE" "DYTN WILD-TYPE" "DYTN WILD-TYPE" 
    TCGA-44-4112     TCGA-44-5643     TCGA-44-5645     TCGA-44-6144 
"DYTN WILD-TYPE" "DYTN WILD-TYPE" "DYTN WILD-TYPE" "DYTN WILD-TYPE" 
    TCGA-44-6145     TCGA-44-6146     TCGA-44-6147     TCGA-44-6148 
"DYTN WILD-TYPE" "DYTN WILD-TYPE" "DYTN WILD-TYPE" "DYTN WILD-TYPE" 
    TCGA-44-6774     TCGA-44-6775     TCGA-44-6776     TCGA-44-6777 
"DYTN WILD-TYPE" "DYTN WILD-TYPE" "DYTN WILD-TYPE" "DYTN WILD-TYPE" 
    TCGA-44-6778     TCGA-44-6779     TCGA-49-4486     TCGA-49-4487 
"DYTN WILD-TYPE"   "DYTN MUTATED" "DYTN WILD-TYPE" "DYTN WILD-TYPE" 
    TCGA-49-4488     TCGA-49-4490     TCGA-49-4494     TCGA-49-4501 
"DYTN WILD-TYPE" "DYTN WILD-TYPE" "DYTN WILD-TYPE" "DYTN WILD-TYPE" 
    TCGA-49-4505     TCGA-49-4506     TCGA-49-4507     TCGA-49-4510 
"DYTN WILD-TYPE" "DYTN WILD-TYPE" "DYTN WILD-TYPE" "DYTN WILD-TYPE" 
    TCGA-49-4512     TCGA-49-4514     TCGA-49-6742     TCGA-49-6743 
"DYTN WILD-TYPE" "DYTN WILD-TYPE" "DYTN WILD-TYPE" "DYTN WILD-TYPE" 
    TCGA-49-6744     TCGA-49-6745     TCGA-50-5044     TCGA-50-5045 
"DYTN WILD-TYPE" "DYTN WILD-TYPE" "DYTN WILD-TYPE" "DYTN WILD-TYPE" 
    TCGA-50-5049     TCGA-50-5051     TCGA-50-5055     TCGA-50-5066 
"DYTN WILD-TYPE" "DYTN WILD-TYPE" "DYTN WILD-TYPE" "DYTN WILD-TYPE" 
    TCGA-50-5068     TCGA-50-5072     TCGA-50-5930     TCGA-50-5931 
"DYTN WILD-TYPE" "DYTN WILD-TYPE" "DYTN WILD-TYPE" "DYTN WILD-TYPE" 
    TCGA-50-5932     TCGA-50-5933     TCGA-50-5935     TCGA-50-5936 
"DYTN WILD-TYPE" "DYTN WILD-TYPE" "DYTN WILD-TYPE" "DYTN WILD-TYPE" 
    TCGA-50-5939     TCGA-50-5941     TCGA-50-5942     TCGA-50-5944 
"DYTN WILD-TYPE" "DYTN WILD-TYPE" "DYTN WILD-TYPE" "DYTN WILD-TYPE" 
    TCGA-50-5946     TCGA-50-6590     TCGA-50-6591     TCGA-50-6592 
"DYTN WILD-TYPE" "DYTN WILD-TYPE" "DYTN WILD-TYPE" "DYTN WILD-TYPE" 
    TCGA-50-6593     TCGA-50-6594     TCGA-50-6595     TCGA-50-6597 
"DYTN WILD-TYPE" "DYTN WILD-TYPE" "DYTN WILD-TYPE" "DYTN WILD-TYPE" 
    TCGA-55-1592     TCGA-55-1594     TCGA-55-1595     TCGA-55-1596 
  "DYTN MUTATED" "DYTN WILD-TYPE" "DYTN WILD-TYPE" "DYTN WILD-TYPE" 
    TCGA-55-5899     TCGA-55-6543     TCGA-55-6642     TCGA-55-6712 
"DYTN WILD-TYPE" "DYTN WILD-TYPE" "DYTN WILD-TYPE" "DYTN WILD-TYPE" 
    TCGA-64-1676     TCGA-64-1677     TCGA-64-1678     TCGA-64-1680 
  "DYTN MUTATED" "DYTN WILD-TYPE" "DYTN WILD-TYPE" "DYTN WILD-TYPE" 
    TCGA-64-5774     TCGA-64-5775     TCGA-64-5778     TCGA-64-5779 
"DYTN WILD-TYPE" "DYTN WILD-TYPE" "DYTN WILD-TYPE" "DYTN WILD-TYPE" 
    TCGA-64-5781     TCGA-64-5815     TCGA-67-3770     TCGA-67-3771 
  "DYTN MUTATED" "DYTN WILD-TYPE" "DYTN WILD-TYPE" "DYTN WILD-TYPE" 
    TCGA-67-3772     TCGA-67-3773     TCGA-67-3774     TCGA-67-6215 
"DYTN WILD-TYPE" "DYTN WILD-TYPE" "DYTN WILD-TYPE" "DYTN WILD-TYPE" 
    TCGA-67-6216     TCGA-67-6217     TCGA-71-6725     TCGA-73-4658 
"DYTN WILD-TYPE" "DYTN WILD-TYPE" "DYTN WILD-TYPE" "DYTN WILD-TYPE" 
    TCGA-73-4659     TCGA-73-4662     TCGA-73-4666     TCGA-73-4668 
"DYTN WILD-TYPE" "DYTN WILD-TYPE" "DYTN WILD-TYPE" "DYTN WILD-TYPE" 
    TCGA-73-4670     TCGA-73-4675     TCGA-73-4676     TCGA-73-4677 
"DYTN WILD-TYPE" "DYTN WILD-TYPE" "DYTN WILD-TYPE" "DYTN WILD-TYPE" 
    TCGA-91-6828     TCGA-91-6829     TCGA-91-6831     TCGA-91-6835 
"DYTN WILD-TYPE" "DYTN WILD-TYPE"   "DYTN MUTATED" "DYTN WILD-TYPE" 
    TCGA-91-6836 
"DYTN WILD-TYPE" 
[1] "hr=" "1.9"
D150V2, continuous
D150V3, binary
[1] "tbl2"
                cls
clus             [,1] [,2]
  DYTN MUTATED      5    5
  DYTN WILD-TYPE   88   74
        clus
vv       DYTN MUTATED DYTN WILD-TYPE
  FEMALE            5             88
  MALE              5             74
D150V4, continuous
D150V5, multiclass
D150V6, multiclass
    clus
vv   DYTN MUTATED DYTN WILD-TYPE
  T1            1             40
  T2            9             99
  T3            0             14
  T4            0              8
D150V7, multiclass
       clus
vv      DYTN MUTATED DYTN WILD-TYPE
  N0               9             86
  N1               1             36
  N2+N3            0             35
D150V8, multiclass
    clus
vv   DYTN MUTATED DYTN WILD-TYPE
  M0            8            129
  M1            0              9
  MX            2             20
D150V9, multiclass
     clus
vv    DYTN MUTATED DYTN WILD-TYPE
  I              8             80
  II             2             31
  III            0             39
  IV             0              9
D150V10, binary
[1] "tbl2"
                cls
clus             [,1] [,2]
  DYTN MUTATED      0   10
  DYTN WILD-TYPE   16  146
     clus
vv    DYTN MUTATED DYTN WILD-TYPE
  NO             0             16
  YES           10            146
D150V11, continuous
D150V12, continuous
D150V13, multiclass
                                             clus
vv                                            DYTN MUTATED DYTN WILD-TYPE
  CURRENT REFORMED SMOKER FOR < OR = 15 YEARS            6             56
  CURRENT REFORMED SMOKER FOR > 15 YEARS                 0             46
  CURRENT SMOKER                                         4             24
  LIFELONG NON-SMOKER                                    0             24
D150V14, continuous

Clustering(151) Variable = OR6K6 MUTATION ANALYSIS
D151V1, survival
                 sevent
clus2              0  1
  OR6K6 MUTATED    5  3
  OR6K6 WILD-TYPE 94 47
  OR6K6 MUTATED OR6K6 WILD-TYPE 
              8             141 
  OR6K6 MUTATED OR6K6 WILD-TYPE 
              3              47 
$`OR6K6 MUTATED`
TCGA-05-4398 TCGA-38-4629 TCGA-38-4632 TCGA-44-2655 TCGA-44-2657 TCGA-44-3918 
       47.05        28.37        44.61        18.87        13.15         6.44 
TCGA-50-6592 TCGA-91-6828 
       25.51         1.22 

$`OR6K6 WILD-TYPE`
TCGA-05-4249 TCGA-05-4250 TCGA-05-4382 TCGA-05-4384 TCGA-05-4390 TCGA-05-4396 
       38.07         3.98        19.92        14.01        37.02         9.96 
TCGA-05-4397 TCGA-05-4402 TCGA-05-4405 TCGA-05-4415 TCGA-05-4417 TCGA-05-4418 
       24.03         8.02        20.05         2.96        14.93         8.98 
TCGA-05-4420 TCGA-05-4424 TCGA-05-4426 TCGA-05-4427 TCGA-05-4430 TCGA-05-4432 
       29.95        30.02        26.01        26.01        25.02        25.02 
TCGA-05-4433 TCGA-05-4434 TCGA-05-5420 TCGA-05-5423 TCGA-05-5425 TCGA-05-5429 
       24.00        15.02         1.02         4.96         2.96         0.99 
TCGA-05-5715 TCGA-35-3615 TCGA-35-4122 TCGA-35-4123 TCGA-35-5375 TCGA-38-4625 
        2.04         0.46         7.36         5.95         8.68        47.61 
TCGA-38-4626 TCGA-38-4627 TCGA-38-4628 TCGA-38-4630 TCGA-38-4631 TCGA-38-6178 
       85.32        37.71        49.02        35.28        11.64         5.19 
TCGA-44-2656 TCGA-44-2659 TCGA-44-2661 TCGA-44-2662 TCGA-44-2665 TCGA-44-2666 
       19.10        17.39         3.39        15.78        13.15         3.19 
TCGA-44-2668 TCGA-44-3396 TCGA-44-3398 TCGA-44-3919 TCGA-44-4112 TCGA-44-5643 
        8.09        10.22         8.32         6.21         4.60         3.48 
TCGA-44-5645 TCGA-44-6144 TCGA-44-6145 TCGA-44-6146 TCGA-44-6147 TCGA-44-6148 
        6.84         0.30         3.35         9.93         7.76         3.12 
TCGA-44-6774 TCGA-44-6775 TCGA-44-6776 TCGA-44-6777 TCGA-44-6778 TCGA-44-6779 
        5.42         2.70        63.72        32.45        36.49        16.41 
TCGA-49-4486 TCGA-49-4487 TCGA-49-4488 TCGA-49-4490 TCGA-49-4494 TCGA-49-4501 
       76.21        28.11        28.57        12.66        35.54        46.72 
TCGA-49-4505 TCGA-49-4506 TCGA-49-4507 TCGA-49-4510 TCGA-49-4512 TCGA-49-4514 
       14.07        32.84         8.81        29.46        29.75        43.20 
TCGA-49-6742 TCGA-49-6743 TCGA-49-6744 TCGA-49-6745 TCGA-50-5044 TCGA-50-5045 
       15.02        12.13        12.99         4.93        20.48        71.47 
TCGA-50-5049 TCGA-50-5051 TCGA-50-5055 TCGA-50-5066 TCGA-50-5068 TCGA-50-5072 
       48.82        14.96        25.81         9.76        49.28         8.05 
TCGA-50-5930 TCGA-50-5931 TCGA-50-5932 TCGA-50-5933 TCGA-50-5935 TCGA-50-5936 
        9.27         8.78        35.87        77.88        21.47         8.45 
TCGA-50-5939 TCGA-50-5941 TCGA-50-5942 TCGA-50-5944 TCGA-50-5946 TCGA-50-6590 
       15.12         9.37         4.44        12.26        11.47        42.31 
TCGA-50-6591 TCGA-50-6593 TCGA-50-6594 TCGA-50-6595 TCGA-50-6597 TCGA-55-1592 
        3.88        11.05        12.16         6.21        33.37        23.05 
TCGA-55-1594 TCGA-55-1595 TCGA-55-1596 TCGA-55-5899 TCGA-55-6543 TCGA-55-6642 
       38.73        48.62        45.17         2.86         0.07        32.61 
TCGA-55-6712 TCGA-64-1676 TCGA-64-1677 TCGA-64-1678 TCGA-64-1680 TCGA-64-5774 
        0.79        56.81        20.65        39.09        37.02        83.84 
TCGA-64-5775 TCGA-64-5778 TCGA-64-5779 TCGA-64-5781 TCGA-64-5815 TCGA-67-3770 
        0.10        30.44        16.67        39.52         7.33         0.99 
TCGA-67-3771 TCGA-67-3772 TCGA-67-3773 TCGA-67-3774 TCGA-67-6215 TCGA-67-6216 
        1.97         0.59         2.04         0.59         0.89         0.69 
TCGA-67-6217 TCGA-71-6725 TCGA-73-4658 TCGA-73-4659 TCGA-73-4662 TCGA-73-4666 
       13.87         2.01        52.57        23.38        29.95        20.28 
TCGA-73-4668 TCGA-73-4670 TCGA-73-4675 TCGA-73-4676 TCGA-73-4677 TCGA-91-6829 
       15.35         0.46         1.32         4.01         1.25        41.33 
TCGA-91-6831 TCGA-91-6835 TCGA-91-6836 
        1.28         1.15         0.36 

  OR6K6 MUTATED OR6K6 WILD-TYPE 
           1.22            0.07 
  OR6K6 MUTATED OR6K6 WILD-TYPE 
          47.05           85.32 
  OR6K6 MUTATED OR6K6 WILD-TYPE 
          22.19           13.15 
[1] "1.2 - 47.0 (22.2)" "0.1 - 85.3 (13.2)"
     TCGA-05-4249      TCGA-05-4250      TCGA-05-4382      TCGA-05-4384 
"OR6K6 WILD-TYPE" "OR6K6 WILD-TYPE" "OR6K6 WILD-TYPE" "OR6K6 WILD-TYPE" 
     TCGA-05-4390      TCGA-05-4396      TCGA-05-4397      TCGA-05-4398 
"OR6K6 WILD-TYPE" "OR6K6 WILD-TYPE" "OR6K6 WILD-TYPE"   "OR6K6 MUTATED" 
     TCGA-05-4402      TCGA-05-4405      TCGA-05-4415      TCGA-05-4417 
"OR6K6 WILD-TYPE" "OR6K6 WILD-TYPE" "OR6K6 WILD-TYPE" "OR6K6 WILD-TYPE" 
     TCGA-05-4418      TCGA-05-4420      TCGA-05-4424      TCGA-05-4426 
"OR6K6 WILD-TYPE" "OR6K6 WILD-TYPE" "OR6K6 WILD-TYPE" "OR6K6 WILD-TYPE" 
     TCGA-05-4427      TCGA-05-4430      TCGA-05-4432      TCGA-05-4433 
"OR6K6 WILD-TYPE" "OR6K6 WILD-TYPE" "OR6K6 WILD-TYPE" "OR6K6 WILD-TYPE" 
     TCGA-05-4434      TCGA-05-5420      TCGA-05-5423      TCGA-05-5425 
"OR6K6 WILD-TYPE" "OR6K6 WILD-TYPE" "OR6K6 WILD-TYPE" "OR6K6 WILD-TYPE" 
     TCGA-05-5429      TCGA-05-5715      TCGA-35-3615      TCGA-35-4122 
"OR6K6 WILD-TYPE" "OR6K6 WILD-TYPE" "OR6K6 WILD-TYPE" "OR6K6 WILD-TYPE" 
     TCGA-35-4123      TCGA-35-5375      TCGA-38-4625      TCGA-38-4626 
"OR6K6 WILD-TYPE" "OR6K6 WILD-TYPE" "OR6K6 WILD-TYPE" "OR6K6 WILD-TYPE" 
     TCGA-38-4627      TCGA-38-4628      TCGA-38-4629      TCGA-38-4630 
"OR6K6 WILD-TYPE" "OR6K6 WILD-TYPE"   "OR6K6 MUTATED" "OR6K6 WILD-TYPE" 
     TCGA-38-4631      TCGA-38-4632      TCGA-38-6178      TCGA-44-2655 
"OR6K6 WILD-TYPE"   "OR6K6 MUTATED" "OR6K6 WILD-TYPE"   "OR6K6 MUTATED" 
     TCGA-44-2656      TCGA-44-2657      TCGA-44-2659      TCGA-44-2661 
"OR6K6 WILD-TYPE"   "OR6K6 MUTATED" "OR6K6 WILD-TYPE" "OR6K6 WILD-TYPE" 
     TCGA-44-2662      TCGA-44-2665      TCGA-44-2666      TCGA-44-2668 
"OR6K6 WILD-TYPE" "OR6K6 WILD-TYPE" "OR6K6 WILD-TYPE" "OR6K6 WILD-TYPE" 
     TCGA-44-3396      TCGA-44-3398      TCGA-44-3918      TCGA-44-3919 
"OR6K6 WILD-TYPE" "OR6K6 WILD-TYPE"   "OR6K6 MUTATED" "OR6K6 WILD-TYPE" 
     TCGA-44-4112      TCGA-44-5643      TCGA-44-5645      TCGA-44-6144 
"OR6K6 WILD-TYPE" "OR6K6 WILD-TYPE" "OR6K6 WILD-TYPE" "OR6K6 WILD-TYPE" 
     TCGA-44-6145      TCGA-44-6146      TCGA-44-6147      TCGA-44-6148 
"OR6K6 WILD-TYPE" "OR6K6 WILD-TYPE" "OR6K6 WILD-TYPE" "OR6K6 WILD-TYPE" 
     TCGA-44-6774      TCGA-44-6775      TCGA-44-6776      TCGA-44-6777 
"OR6K6 WILD-TYPE" "OR6K6 WILD-TYPE" "OR6K6 WILD-TYPE" "OR6K6 WILD-TYPE" 
     TCGA-44-6778      TCGA-44-6779      TCGA-49-4486      TCGA-49-4487 
"OR6K6 WILD-TYPE" "OR6K6 WILD-TYPE" "OR6K6 WILD-TYPE" "OR6K6 WILD-TYPE" 
     TCGA-49-4488      TCGA-49-4490      TCGA-49-4494      TCGA-49-4501 
"OR6K6 WILD-TYPE" "OR6K6 WILD-TYPE" "OR6K6 WILD-TYPE" "OR6K6 WILD-TYPE" 
     TCGA-49-4505      TCGA-49-4506      TCGA-49-4507      TCGA-49-4510 
"OR6K6 WILD-TYPE" "OR6K6 WILD-TYPE" "OR6K6 WILD-TYPE" "OR6K6 WILD-TYPE" 
     TCGA-49-4512      TCGA-49-4514      TCGA-49-6742      TCGA-49-6743 
"OR6K6 WILD-TYPE" "OR6K6 WILD-TYPE" "OR6K6 WILD-TYPE" "OR6K6 WILD-TYPE" 
     TCGA-49-6744      TCGA-49-6745      TCGA-50-5044      TCGA-50-5045 
"OR6K6 WILD-TYPE" "OR6K6 WILD-TYPE" "OR6K6 WILD-TYPE" "OR6K6 WILD-TYPE" 
     TCGA-50-5049      TCGA-50-5051      TCGA-50-5055      TCGA-50-5066 
"OR6K6 WILD-TYPE" "OR6K6 WILD-TYPE" "OR6K6 WILD-TYPE" "OR6K6 WILD-TYPE" 
     TCGA-50-5068      TCGA-50-5072      TCGA-50-5930      TCGA-50-5931 
"OR6K6 WILD-TYPE" "OR6K6 WILD-TYPE" "OR6K6 WILD-TYPE" "OR6K6 WILD-TYPE" 
     TCGA-50-5932      TCGA-50-5933      TCGA-50-5935      TCGA-50-5936 
"OR6K6 WILD-TYPE" "OR6K6 WILD-TYPE" "OR6K6 WILD-TYPE" "OR6K6 WILD-TYPE" 
     TCGA-50-5939      TCGA-50-5941      TCGA-50-5942      TCGA-50-5944 
"OR6K6 WILD-TYPE" "OR6K6 WILD-TYPE" "OR6K6 WILD-TYPE" "OR6K6 WILD-TYPE" 
     TCGA-50-5946      TCGA-50-6590      TCGA-50-6591      TCGA-50-6592 
"OR6K6 WILD-TYPE" "OR6K6 WILD-TYPE" "OR6K6 WILD-TYPE"   "OR6K6 MUTATED" 
     TCGA-50-6593      TCGA-50-6594      TCGA-50-6595      TCGA-50-6597 
"OR6K6 WILD-TYPE" "OR6K6 WILD-TYPE" "OR6K6 WILD-TYPE" "OR6K6 WILD-TYPE" 
     TCGA-55-1592      TCGA-55-1594      TCGA-55-1595      TCGA-55-1596 
"OR6K6 WILD-TYPE" "OR6K6 WILD-TYPE" "OR6K6 WILD-TYPE" "OR6K6 WILD-TYPE" 
     TCGA-55-5899      TCGA-55-6543      TCGA-55-6642      TCGA-55-6712 
"OR6K6 WILD-TYPE" "OR6K6 WILD-TYPE" "OR6K6 WILD-TYPE" "OR6K6 WILD-TYPE" 
     TCGA-64-1676      TCGA-64-1677      TCGA-64-1678      TCGA-64-1680 
"OR6K6 WILD-TYPE" "OR6K6 WILD-TYPE" "OR6K6 WILD-TYPE" "OR6K6 WILD-TYPE" 
     TCGA-64-5774      TCGA-64-5775      TCGA-64-5778      TCGA-64-5779 
"OR6K6 WILD-TYPE" "OR6K6 WILD-TYPE" "OR6K6 WILD-TYPE" "OR6K6 WILD-TYPE" 
     TCGA-64-5781      TCGA-64-5815      TCGA-67-3770      TCGA-67-3771 
"OR6K6 WILD-TYPE" "OR6K6 WILD-TYPE" "OR6K6 WILD-TYPE" "OR6K6 WILD-TYPE" 
     TCGA-67-3772      TCGA-67-3773      TCGA-67-3774      TCGA-67-6215 
"OR6K6 WILD-TYPE" "OR6K6 WILD-TYPE" "OR6K6 WILD-TYPE" "OR6K6 WILD-TYPE" 
     TCGA-67-6216      TCGA-67-6217      TCGA-71-6725      TCGA-73-4658 
"OR6K6 WILD-TYPE" "OR6K6 WILD-TYPE" "OR6K6 WILD-TYPE" "OR6K6 WILD-TYPE" 
     TCGA-73-4659      TCGA-73-4662      TCGA-73-4666      TCGA-73-4668 
"OR6K6 WILD-TYPE" "OR6K6 WILD-TYPE" "OR6K6 WILD-TYPE" "OR6K6 WILD-TYPE" 
     TCGA-73-4670      TCGA-73-4675      TCGA-73-4676      TCGA-73-4677 
"OR6K6 WILD-TYPE" "OR6K6 WILD-TYPE" "OR6K6 WILD-TYPE" "OR6K6 WILD-TYPE" 
     TCGA-91-6828      TCGA-91-6829      TCGA-91-6831      TCGA-91-6835 
  "OR6K6 MUTATED" "OR6K6 WILD-TYPE" "OR6K6 WILD-TYPE" "OR6K6 WILD-TYPE" 
     TCGA-91-6836 
"OR6K6 WILD-TYPE" 
     TCGA-05-4249      TCGA-05-4250      TCGA-05-4382      TCGA-05-4384 
"OR6K6 WILD-TYPE" "OR6K6 WILD-TYPE" "OR6K6 WILD-TYPE" "OR6K6 WILD-TYPE" 
     TCGA-05-4390      TCGA-05-4396      TCGA-05-4397      TCGA-05-4398 
"OR6K6 WILD-TYPE" "OR6K6 WILD-TYPE" "OR6K6 WILD-TYPE"   "OR6K6 MUTATED" 
     TCGA-05-4402      TCGA-05-4405      TCGA-05-4415      TCGA-05-4417 
"OR6K6 WILD-TYPE" "OR6K6 WILD-TYPE" "OR6K6 WILD-TYPE" "OR6K6 WILD-TYPE" 
     TCGA-05-4418      TCGA-05-4420      TCGA-05-4424      TCGA-05-4426 
"OR6K6 WILD-TYPE" "OR6K6 WILD-TYPE" "OR6K6 WILD-TYPE" "OR6K6 WILD-TYPE" 
     TCGA-05-4427      TCGA-05-4430      TCGA-05-4432      TCGA-05-4433 
"OR6K6 WILD-TYPE" "OR6K6 WILD-TYPE" "OR6K6 WILD-TYPE" "OR6K6 WILD-TYPE" 
     TCGA-05-4434      TCGA-05-5420      TCGA-05-5423      TCGA-05-5425 
"OR6K6 WILD-TYPE" "OR6K6 WILD-TYPE" "OR6K6 WILD-TYPE" "OR6K6 WILD-TYPE" 
     TCGA-05-5429      TCGA-05-5715      TCGA-35-3615      TCGA-35-4122 
"OR6K6 WILD-TYPE" "OR6K6 WILD-TYPE" "OR6K6 WILD-TYPE" "OR6K6 WILD-TYPE" 
     TCGA-35-4123      TCGA-35-5375      TCGA-38-4625      TCGA-38-4626 
"OR6K6 WILD-TYPE" "OR6K6 WILD-TYPE" "OR6K6 WILD-TYPE" "OR6K6 WILD-TYPE" 
     TCGA-38-4627      TCGA-38-4628      TCGA-38-4629      TCGA-38-4630 
"OR6K6 WILD-TYPE" "OR6K6 WILD-TYPE"   "OR6K6 MUTATED" "OR6K6 WILD-TYPE" 
     TCGA-38-4631      TCGA-38-4632      TCGA-38-6178      TCGA-44-2655 
"OR6K6 WILD-TYPE"   "OR6K6 MUTATED" "OR6K6 WILD-TYPE"   "OR6K6 MUTATED" 
     TCGA-44-2656      TCGA-44-2657      TCGA-44-2659      TCGA-44-2661 
"OR6K6 WILD-TYPE"   "OR6K6 MUTATED" "OR6K6 WILD-TYPE" "OR6K6 WILD-TYPE" 
     TCGA-44-2662      TCGA-44-2665      TCGA-44-2666      TCGA-44-2668 
"OR6K6 WILD-TYPE" "OR6K6 WILD-TYPE" "OR6K6 WILD-TYPE" "OR6K6 WILD-TYPE" 
     TCGA-44-3396      TCGA-44-3398      TCGA-44-3918      TCGA-44-3919 
"OR6K6 WILD-TYPE" "OR6K6 WILD-TYPE"   "OR6K6 MUTATED" "OR6K6 WILD-TYPE" 
     TCGA-44-4112      TCGA-44-5643      TCGA-44-5645      TCGA-44-6144 
"OR6K6 WILD-TYPE" "OR6K6 WILD-TYPE" "OR6K6 WILD-TYPE" "OR6K6 WILD-TYPE" 
     TCGA-44-6145      TCGA-44-6146      TCGA-44-6147      TCGA-44-6148 
"OR6K6 WILD-TYPE" "OR6K6 WILD-TYPE" "OR6K6 WILD-TYPE" "OR6K6 WILD-TYPE" 
     TCGA-44-6774      TCGA-44-6775      TCGA-44-6776      TCGA-44-6777 
"OR6K6 WILD-TYPE" "OR6K6 WILD-TYPE" "OR6K6 WILD-TYPE" "OR6K6 WILD-TYPE" 
     TCGA-44-6778      TCGA-44-6779      TCGA-49-4486      TCGA-49-4487 
"OR6K6 WILD-TYPE" "OR6K6 WILD-TYPE" "OR6K6 WILD-TYPE" "OR6K6 WILD-TYPE" 
     TCGA-49-4488      TCGA-49-4490      TCGA-49-4494      TCGA-49-4501 
"OR6K6 WILD-TYPE" "OR6K6 WILD-TYPE" "OR6K6 WILD-TYPE" "OR6K6 WILD-TYPE" 
     TCGA-49-4505      TCGA-49-4506      TCGA-49-4507      TCGA-49-4510 
"OR6K6 WILD-TYPE" "OR6K6 WILD-TYPE" "OR6K6 WILD-TYPE" "OR6K6 WILD-TYPE" 
     TCGA-49-4512      TCGA-49-4514      TCGA-49-6742      TCGA-49-6743 
"OR6K6 WILD-TYPE" "OR6K6 WILD-TYPE" "OR6K6 WILD-TYPE" "OR6K6 WILD-TYPE" 
     TCGA-49-6744      TCGA-49-6745      TCGA-50-5044      TCGA-50-5045 
"OR6K6 WILD-TYPE" "OR6K6 WILD-TYPE" "OR6K6 WILD-TYPE" "OR6K6 WILD-TYPE" 
     TCGA-50-5049      TCGA-50-5051      TCGA-50-5055      TCGA-50-5066 
"OR6K6 WILD-TYPE" "OR6K6 WILD-TYPE" "OR6K6 WILD-TYPE" "OR6K6 WILD-TYPE" 
     TCGA-50-5068      TCGA-50-5072      TCGA-50-5930      TCGA-50-5931 
"OR6K6 WILD-TYPE" "OR6K6 WILD-TYPE" "OR6K6 WILD-TYPE" "OR6K6 WILD-TYPE" 
     TCGA-50-5932      TCGA-50-5933      TCGA-50-5935      TCGA-50-5936 
"OR6K6 WILD-TYPE" "OR6K6 WILD-TYPE" "OR6K6 WILD-TYPE" "OR6K6 WILD-TYPE" 
     TCGA-50-5939      TCGA-50-5941      TCGA-50-5942      TCGA-50-5944 
"OR6K6 WILD-TYPE" "OR6K6 WILD-TYPE" "OR6K6 WILD-TYPE" "OR6K6 WILD-TYPE" 
     TCGA-50-5946      TCGA-50-6590      TCGA-50-6591      TCGA-50-6592 
"OR6K6 WILD-TYPE" "OR6K6 WILD-TYPE" "OR6K6 WILD-TYPE"   "OR6K6 MUTATED" 
     TCGA-50-6593      TCGA-50-6594      TCGA-50-6595      TCGA-50-6597 
"OR6K6 WILD-TYPE" "OR6K6 WILD-TYPE" "OR6K6 WILD-TYPE" "OR6K6 WILD-TYPE" 
     TCGA-55-1592      TCGA-55-1594      TCGA-55-1595      TCGA-55-1596 
"OR6K6 WILD-TYPE" "OR6K6 WILD-TYPE" "OR6K6 WILD-TYPE" "OR6K6 WILD-TYPE" 
     TCGA-55-5899      TCGA-55-6543      TCGA-55-6642      TCGA-55-6712 
"OR6K6 WILD-TYPE" "OR6K6 WILD-TYPE" "OR6K6 WILD-TYPE" "OR6K6 WILD-TYPE" 
     TCGA-64-1676      TCGA-64-1677      TCGA-64-1678      TCGA-64-1680 
"OR6K6 WILD-TYPE" "OR6K6 WILD-TYPE" "OR6K6 WILD-TYPE" "OR6K6 WILD-TYPE" 
     TCGA-64-5774      TCGA-64-5775      TCGA-64-5778      TCGA-64-5779 
"OR6K6 WILD-TYPE" "OR6K6 WILD-TYPE" "OR6K6 WILD-TYPE" "OR6K6 WILD-TYPE" 
     TCGA-64-5781      TCGA-64-5815      TCGA-67-3770      TCGA-67-3771 
"OR6K6 WILD-TYPE" "OR6K6 WILD-TYPE" "OR6K6 WILD-TYPE" "OR6K6 WILD-TYPE" 
     TCGA-67-3772      TCGA-67-3773      TCGA-67-3774      TCGA-67-6215 
"OR6K6 WILD-TYPE" "OR6K6 WILD-TYPE" "OR6K6 WILD-TYPE" "OR6K6 WILD-TYPE" 
     TCGA-67-6216      TCGA-67-6217      TCGA-71-6725      TCGA-73-4658 
"OR6K6 WILD-TYPE" "OR6K6 WILD-TYPE" "OR6K6 WILD-TYPE" "OR6K6 WILD-TYPE" 
     TCGA-73-4659      TCGA-73-4662      TCGA-73-4666      TCGA-73-4668 
"OR6K6 WILD-TYPE" "OR6K6 WILD-TYPE" "OR6K6 WILD-TYPE" "OR6K6 WILD-TYPE" 
     TCGA-73-4670      TCGA-73-4675      TCGA-73-4676      TCGA-73-4677 
"OR6K6 WILD-TYPE" "OR6K6 WILD-TYPE" "OR6K6 WILD-TYPE" "OR6K6 WILD-TYPE" 
     TCGA-91-6828      TCGA-91-6829      TCGA-91-6831      TCGA-91-6835 
  "OR6K6 MUTATED" "OR6K6 WILD-TYPE" "OR6K6 WILD-TYPE" "OR6K6 WILD-TYPE" 
     TCGA-91-6836 
"OR6K6 WILD-TYPE" 
     TCGA-05-4249      TCGA-05-4250      TCGA-05-4382      TCGA-05-4384 
"OR6K6 WILD-TYPE" "OR6K6 WILD-TYPE" "OR6K6 WILD-TYPE" "OR6K6 WILD-TYPE" 
     TCGA-05-4390      TCGA-05-4396      TCGA-05-4397      TCGA-05-4398 
"OR6K6 WILD-TYPE" "OR6K6 WILD-TYPE" "OR6K6 WILD-TYPE"   "OR6K6 MUTATED" 
     TCGA-05-4402      TCGA-05-4405      TCGA-05-4415      TCGA-05-4417 
"OR6K6 WILD-TYPE" "OR6K6 WILD-TYPE" "OR6K6 WILD-TYPE" "OR6K6 WILD-TYPE" 
     TCGA-05-4418      TCGA-05-4420      TCGA-05-4424      TCGA-05-4426 
"OR6K6 WILD-TYPE" "OR6K6 WILD-TYPE" "OR6K6 WILD-TYPE" "OR6K6 WILD-TYPE" 
     TCGA-05-4427      TCGA-05-4430      TCGA-05-4432      TCGA-05-4433 
"OR6K6 WILD-TYPE" "OR6K6 WILD-TYPE" "OR6K6 WILD-TYPE" "OR6K6 WILD-TYPE" 
     TCGA-05-4434      TCGA-05-5420      TCGA-05-5423      TCGA-05-5425 
"OR6K6 WILD-TYPE" "OR6K6 WILD-TYPE" "OR6K6 WILD-TYPE" "OR6K6 WILD-TYPE" 
     TCGA-05-5429      TCGA-05-5715      TCGA-35-3615      TCGA-35-4122 
"OR6K6 WILD-TYPE" "OR6K6 WILD-TYPE" "OR6K6 WILD-TYPE" "OR6K6 WILD-TYPE" 
     TCGA-35-4123      TCGA-35-5375      TCGA-38-4625      TCGA-38-4626 
"OR6K6 WILD-TYPE" "OR6K6 WILD-TYPE" "OR6K6 WILD-TYPE" "OR6K6 WILD-TYPE" 
     TCGA-38-4627      TCGA-38-4628      TCGA-38-4629      TCGA-38-4630 
"OR6K6 WILD-TYPE" "OR6K6 WILD-TYPE"   "OR6K6 MUTATED" "OR6K6 WILD-TYPE" 
     TCGA-38-4631      TCGA-38-4632      TCGA-38-6178      TCGA-44-2655 
"OR6K6 WILD-TYPE"   "OR6K6 MUTATED" "OR6K6 WILD-TYPE"   "OR6K6 MUTATED" 
     TCGA-44-2656      TCGA-44-2657      TCGA-44-2659      TCGA-44-2661 
"OR6K6 WILD-TYPE"   "OR6K6 MUTATED" "OR6K6 WILD-TYPE" "OR6K6 WILD-TYPE" 
     TCGA-44-2662      TCGA-44-2665      TCGA-44-2666      TCGA-44-2668 
"OR6K6 WILD-TYPE" "OR6K6 WILD-TYPE" "OR6K6 WILD-TYPE" "OR6K6 WILD-TYPE" 
     TCGA-44-3396      TCGA-44-3398      TCGA-44-3918      TCGA-44-3919 
"OR6K6 WILD-TYPE" "OR6K6 WILD-TYPE"   "OR6K6 MUTATED" "OR6K6 WILD-TYPE" 
     TCGA-44-4112      TCGA-44-5643      TCGA-44-5645      TCGA-44-6144 
"OR6K6 WILD-TYPE" "OR6K6 WILD-TYPE" "OR6K6 WILD-TYPE" "OR6K6 WILD-TYPE" 
     TCGA-44-6145      TCGA-44-6146      TCGA-44-6147      TCGA-44-6148 
"OR6K6 WILD-TYPE" "OR6K6 WILD-TYPE" "OR6K6 WILD-TYPE" "OR6K6 WILD-TYPE" 
     TCGA-44-6774      TCGA-44-6775      TCGA-44-6776      TCGA-44-6777 
"OR6K6 WILD-TYPE" "OR6K6 WILD-TYPE" "OR6K6 WILD-TYPE" "OR6K6 WILD-TYPE" 
     TCGA-44-6778      TCGA-44-6779      TCGA-49-4486      TCGA-49-4487 
"OR6K6 WILD-TYPE" "OR6K6 WILD-TYPE" "OR6K6 WILD-TYPE" "OR6K6 WILD-TYPE" 
     TCGA-49-4488      TCGA-49-4490      TCGA-49-4494      TCGA-49-4501 
"OR6K6 WILD-TYPE" "OR6K6 WILD-TYPE" "OR6K6 WILD-TYPE" "OR6K6 WILD-TYPE" 
     TCGA-49-4505      TCGA-49-4506      TCGA-49-4507      TCGA-49-4510 
"OR6K6 WILD-TYPE" "OR6K6 WILD-TYPE" "OR6K6 WILD-TYPE" "OR6K6 WILD-TYPE" 
     TCGA-49-4512      TCGA-49-4514      TCGA-49-6742      TCGA-49-6743 
"OR6K6 WILD-TYPE" "OR6K6 WILD-TYPE" "OR6K6 WILD-TYPE" "OR6K6 WILD-TYPE" 
     TCGA-49-6744      TCGA-49-6745      TCGA-50-5044      TCGA-50-5045 
"OR6K6 WILD-TYPE" "OR6K6 WILD-TYPE" "OR6K6 WILD-TYPE" "OR6K6 WILD-TYPE" 
     TCGA-50-5049      TCGA-50-5051      TCGA-50-5055      TCGA-50-5066 
"OR6K6 WILD-TYPE" "OR6K6 WILD-TYPE" "OR6K6 WILD-TYPE" "OR6K6 WILD-TYPE" 
     TCGA-50-5068      TCGA-50-5072      TCGA-50-5930      TCGA-50-5931 
"OR6K6 WILD-TYPE" "OR6K6 WILD-TYPE" "OR6K6 WILD-TYPE" "OR6K6 WILD-TYPE" 
     TCGA-50-5932      TCGA-50-5933      TCGA-50-5935      TCGA-50-5936 
"OR6K6 WILD-TYPE" "OR6K6 WILD-TYPE" "OR6K6 WILD-TYPE" "OR6K6 WILD-TYPE" 
     TCGA-50-5939      TCGA-50-5941      TCGA-50-5942      TCGA-50-5944 
"OR6K6 WILD-TYPE" "OR6K6 WILD-TYPE" "OR6K6 WILD-TYPE" "OR6K6 WILD-TYPE" 
     TCGA-50-5946      TCGA-50-6590      TCGA-50-6591      TCGA-50-6592 
"OR6K6 WILD-TYPE" "OR6K6 WILD-TYPE" "OR6K6 WILD-TYPE"   "OR6K6 MUTATED" 
     TCGA-50-6593      TCGA-50-6594      TCGA-50-6595      TCGA-50-6597 
"OR6K6 WILD-TYPE" "OR6K6 WILD-TYPE" "OR6K6 WILD-TYPE" "OR6K6 WILD-TYPE" 
     TCGA-55-1592      TCGA-55-1594      TCGA-55-1595      TCGA-55-1596 
"OR6K6 WILD-TYPE" "OR6K6 WILD-TYPE" "OR6K6 WILD-TYPE" "OR6K6 WILD-TYPE" 
     TCGA-55-5899      TCGA-55-6543      TCGA-55-6642      TCGA-55-6712 
"OR6K6 WILD-TYPE" "OR6K6 WILD-TYPE" "OR6K6 WILD-TYPE" "OR6K6 WILD-TYPE" 
     TCGA-64-1676      TCGA-64-1677      TCGA-64-1678      TCGA-64-1680 
"OR6K6 WILD-TYPE" "OR6K6 WILD-TYPE" "OR6K6 WILD-TYPE" "OR6K6 WILD-TYPE" 
     TCGA-64-5774      TCGA-64-5775      TCGA-64-5778      TCGA-64-5779 
"OR6K6 WILD-TYPE" "OR6K6 WILD-TYPE" "OR6K6 WILD-TYPE" "OR6K6 WILD-TYPE" 
     TCGA-64-5781      TCGA-64-5815      TCGA-67-3770      TCGA-67-3771 
"OR6K6 WILD-TYPE" "OR6K6 WILD-TYPE" "OR6K6 WILD-TYPE" "OR6K6 WILD-TYPE" 
     TCGA-67-3772      TCGA-67-3773      TCGA-67-3774      TCGA-67-6215 
"OR6K6 WILD-TYPE" "OR6K6 WILD-TYPE" "OR6K6 WILD-TYPE" "OR6K6 WILD-TYPE" 
     TCGA-67-6216      TCGA-67-6217      TCGA-71-6725      TCGA-73-4658 
"OR6K6 WILD-TYPE" "OR6K6 WILD-TYPE" "OR6K6 WILD-TYPE" "OR6K6 WILD-TYPE" 
     TCGA-73-4659      TCGA-73-4662      TCGA-73-4666      TCGA-73-4668 
"OR6K6 WILD-TYPE" "OR6K6 WILD-TYPE" "OR6K6 WILD-TYPE" "OR6K6 WILD-TYPE" 
     TCGA-73-4670      TCGA-73-4675      TCGA-73-4676      TCGA-73-4677 
"OR6K6 WILD-TYPE" "OR6K6 WILD-TYPE" "OR6K6 WILD-TYPE" "OR6K6 WILD-TYPE" 
     TCGA-91-6828      TCGA-91-6829      TCGA-91-6831      TCGA-91-6835 
  "OR6K6 MUTATED" "OR6K6 WILD-TYPE" "OR6K6 WILD-TYPE" "OR6K6 WILD-TYPE" 
     TCGA-91-6836 
"OR6K6 WILD-TYPE" 
[1] "hr=" "1"  
D151V2, continuous
D151V3, binary
[1] "tbl2"
                 cls
clus              [,1] [,2]
  OR6K6 MUTATED      5    3
  OR6K6 WILD-TYPE   88   76
        clus
vv       OR6K6 MUTATED OR6K6 WILD-TYPE
  FEMALE             5              88
  MALE               3              76
D151V4, continuous
D151V5, multiclass
D151V6, multiclass
    clus
vv   OR6K6 MUTATED OR6K6 WILD-TYPE
  T1             3              38
  T2             3             105
  T3             1              13
  T4             1               7
D151V7, multiclass
       clus
vv      OR6K6 MUTATED OR6K6 WILD-TYPE
  N0                5              90
  N1                1              36
  N2+N3             1              34
D151V8, multiclass
    clus
vv   OR6K6 MUTATED OR6K6 WILD-TYPE
  M0             6             131
  M1             1               8
  MX             1              21
D151V9, multiclass
     clus
vv    OR6K6 MUTATED OR6K6 WILD-TYPE
  I               5              83
  II              1              32
  III             1              38
  IV              1               8
D151V10, binary
[1] "tbl2"
                 cls
clus              [,1] [,2]
  OR6K6 MUTATED      0    8
  OR6K6 WILD-TYPE   16  148
     clus
vv    OR6K6 MUTATED OR6K6 WILD-TYPE
  NO              0              16
  YES             8             148
D151V11, continuous
D151V12, continuous
D151V13, multiclass
                                             clus
vv                                            OR6K6 MUTATED OR6K6 WILD-TYPE
  CURRENT REFORMED SMOKER FOR < OR = 15 YEARS             4              58
  CURRENT REFORMED SMOKER FOR > 15 YEARS                  3              43
  CURRENT SMOKER                                          1              27
  LIFELONG NON-SMOKER                                     0              24
D151V14, continuous

Clustering(152) Variable = FCRL1 MUTATION ANALYSIS
D152V1, survival
                 sevent
clus2              0  1
  FCRL1 MUTATED    4  2
  FCRL1 WILD-TYPE 95 48
  FCRL1 MUTATED FCRL1 WILD-TYPE 
              6             143 
  FCRL1 MUTATED FCRL1 WILD-TYPE 
              2              48 
$`FCRL1 MUTATED`
TCGA-35-5375 TCGA-44-2655 TCGA-49-4486 TCGA-49-4487 TCGA-50-5049 TCGA-73-4668 
        8.68        18.87        76.21        28.11        48.82        15.35 

$`FCRL1 WILD-TYPE`
TCGA-05-4249 TCGA-05-4250 TCGA-05-4382 TCGA-05-4384 TCGA-05-4390 TCGA-05-4396 
       38.07         3.98        19.92        14.01        37.02         9.96 
TCGA-05-4397 TCGA-05-4398 TCGA-05-4402 TCGA-05-4405 TCGA-05-4415 TCGA-05-4417 
       24.03        47.05         8.02        20.05         2.96        14.93 
TCGA-05-4418 TCGA-05-4420 TCGA-05-4424 TCGA-05-4426 TCGA-05-4427 TCGA-05-4430 
        8.98        29.95        30.02        26.01        26.01        25.02 
TCGA-05-4432 TCGA-05-4433 TCGA-05-4434 TCGA-05-5420 TCGA-05-5423 TCGA-05-5425 
       25.02        24.00        15.02         1.02         4.96         2.96 
TCGA-05-5429 TCGA-05-5715 TCGA-35-3615 TCGA-35-4122 TCGA-35-4123 TCGA-38-4625 
        0.99         2.04         0.46         7.36         5.95        47.61 
TCGA-38-4626 TCGA-38-4627 TCGA-38-4628 TCGA-38-4629 TCGA-38-4630 TCGA-38-4631 
       85.32        37.71        49.02        28.37        35.28        11.64 
TCGA-38-4632 TCGA-38-6178 TCGA-44-2656 TCGA-44-2657 TCGA-44-2659 TCGA-44-2661 
       44.61         5.19        19.10        13.15        17.39         3.39 
TCGA-44-2662 TCGA-44-2665 TCGA-44-2666 TCGA-44-2668 TCGA-44-3396 TCGA-44-3398 
       15.78        13.15         3.19         8.09        10.22         8.32 
TCGA-44-3918 TCGA-44-3919 TCGA-44-4112 TCGA-44-5643 TCGA-44-5645 TCGA-44-6144 
        6.44         6.21         4.60         3.48         6.84         0.30 
TCGA-44-6145 TCGA-44-6146 TCGA-44-6147 TCGA-44-6148 TCGA-44-6774 TCGA-44-6775 
        3.35         9.93         7.76         3.12         5.42         2.70 
TCGA-44-6776 TCGA-44-6777 TCGA-44-6778 TCGA-44-6779 TCGA-49-4488 TCGA-49-4490 
       63.72        32.45        36.49        16.41        28.57        12.66 
TCGA-49-4494 TCGA-49-4501 TCGA-49-4505 TCGA-49-4506 TCGA-49-4507 TCGA-49-4510 
       35.54        46.72        14.07        32.84         8.81        29.46 
TCGA-49-4512 TCGA-49-4514 TCGA-49-6742 TCGA-49-6743 TCGA-49-6744 TCGA-49-6745 
       29.75        43.20        15.02        12.13        12.99         4.93 
TCGA-50-5044 TCGA-50-5045 TCGA-50-5051 TCGA-50-5055 TCGA-50-5066 TCGA-50-5068 
       20.48        71.47        14.96        25.81         9.76        49.28 
TCGA-50-5072 TCGA-50-5930 TCGA-50-5931 TCGA-50-5932 TCGA-50-5933 TCGA-50-5935 
        8.05         9.27         8.78        35.87        77.88        21.47 
TCGA-50-5936 TCGA-50-5939 TCGA-50-5941 TCGA-50-5942 TCGA-50-5944 TCGA-50-5946 
        8.45        15.12         9.37         4.44        12.26        11.47 
TCGA-50-6590 TCGA-50-6591 TCGA-50-6592 TCGA-50-6593 TCGA-50-6594 TCGA-50-6595 
       42.31         3.88        25.51        11.05        12.16         6.21 
TCGA-50-6597 TCGA-55-1592 TCGA-55-1594 TCGA-55-1595 TCGA-55-1596 TCGA-55-5899 
       33.37        23.05        38.73        48.62        45.17         2.86 
TCGA-55-6543 TCGA-55-6642 TCGA-55-6712 TCGA-64-1676 TCGA-64-1677 TCGA-64-1678 
        0.07        32.61         0.79        56.81        20.65        39.09 
TCGA-64-1680 TCGA-64-5774 TCGA-64-5775 TCGA-64-5778 TCGA-64-5779 TCGA-64-5781 
       37.02        83.84         0.10        30.44        16.67        39.52 
TCGA-64-5815 TCGA-67-3770 TCGA-67-3771 TCGA-67-3772 TCGA-67-3773 TCGA-67-3774 
        7.33         0.99         1.97         0.59         2.04         0.59 
TCGA-67-6215 TCGA-67-6216 TCGA-67-6217 TCGA-71-6725 TCGA-73-4658 TCGA-73-4659 
        0.89         0.69        13.87         2.01        52.57        23.38 
TCGA-73-4662 TCGA-73-4666 TCGA-73-4670 TCGA-73-4675 TCGA-73-4676 TCGA-73-4677 
       29.95        20.28         0.46         1.32         4.01         1.25 
TCGA-91-6828 TCGA-91-6829 TCGA-91-6831 TCGA-91-6835 TCGA-91-6836 
        1.22        41.33         1.28         1.15         0.36 

  FCRL1 MUTATED FCRL1 WILD-TYPE 
           8.68            0.07 
  FCRL1 MUTATED FCRL1 WILD-TYPE 
          76.21           85.32 
  FCRL1 MUTATED FCRL1 WILD-TYPE 
          23.49           13.15 
[1] "8.7 - 76.2 (23.5)" "0.1 - 85.3 (13.2)"
     TCGA-05-4249      TCGA-05-4250      TCGA-05-4382      TCGA-05-4384 
"FCRL1 WILD-TYPE" "FCRL1 WILD-TYPE" "FCRL1 WILD-TYPE" "FCRL1 WILD-TYPE" 
     TCGA-05-4390      TCGA-05-4396      TCGA-05-4397      TCGA-05-4398 
"FCRL1 WILD-TYPE" "FCRL1 WILD-TYPE" "FCRL1 WILD-TYPE" "FCRL1 WILD-TYPE" 
     TCGA-05-4402      TCGA-05-4405      TCGA-05-4415      TCGA-05-4417 
"FCRL1 WILD-TYPE" "FCRL1 WILD-TYPE" "FCRL1 WILD-TYPE" "FCRL1 WILD-TYPE" 
     TCGA-05-4418      TCGA-05-4420      TCGA-05-4424      TCGA-05-4426 
"FCRL1 WILD-TYPE" "FCRL1 WILD-TYPE" "FCRL1 WILD-TYPE" "FCRL1 WILD-TYPE" 
     TCGA-05-4427      TCGA-05-4430      TCGA-05-4432      TCGA-05-4433 
"FCRL1 WILD-TYPE" "FCRL1 WILD-TYPE" "FCRL1 WILD-TYPE" "FCRL1 WILD-TYPE" 
     TCGA-05-4434      TCGA-05-5420      TCGA-05-5423      TCGA-05-5425 
"FCRL1 WILD-TYPE" "FCRL1 WILD-TYPE" "FCRL1 WILD-TYPE" "FCRL1 WILD-TYPE" 
     TCGA-05-5429      TCGA-05-5715      TCGA-35-3615      TCGA-35-4122 
"FCRL1 WILD-TYPE" "FCRL1 WILD-TYPE" "FCRL1 WILD-TYPE" "FCRL1 WILD-TYPE" 
     TCGA-35-4123      TCGA-35-5375      TCGA-38-4625      TCGA-38-4626 
"FCRL1 WILD-TYPE"   "FCRL1 MUTATED" "FCRL1 WILD-TYPE" "FCRL1 WILD-TYPE" 
     TCGA-38-4627      TCGA-38-4628      TCGA-38-4629      TCGA-38-4630 
"FCRL1 WILD-TYPE" "FCRL1 WILD-TYPE" "FCRL1 WILD-TYPE" "FCRL1 WILD-TYPE" 
     TCGA-38-4631      TCGA-38-4632      TCGA-38-6178      TCGA-44-2655 
"FCRL1 WILD-TYPE" "FCRL1 WILD-TYPE" "FCRL1 WILD-TYPE"   "FCRL1 MUTATED" 
     TCGA-44-2656      TCGA-44-2657      TCGA-44-2659      TCGA-44-2661 
"FCRL1 WILD-TYPE" "FCRL1 WILD-TYPE" "FCRL1 WILD-TYPE" "FCRL1 WILD-TYPE" 
     TCGA-44-2662      TCGA-44-2665      TCGA-44-2666      TCGA-44-2668 
"FCRL1 WILD-TYPE" "FCRL1 WILD-TYPE" "FCRL1 WILD-TYPE" "FCRL1 WILD-TYPE" 
     TCGA-44-3396      TCGA-44-3398      TCGA-44-3918      TCGA-44-3919 
"FCRL1 WILD-TYPE" "FCRL1 WILD-TYPE" "FCRL1 WILD-TYPE" "FCRL1 WILD-TYPE" 
     TCGA-44-4112      TCGA-44-5643      TCGA-44-5645      TCGA-44-6144 
"FCRL1 WILD-TYPE" "FCRL1 WILD-TYPE" "FCRL1 WILD-TYPE" "FCRL1 WILD-TYPE" 
     TCGA-44-6145      TCGA-44-6146      TCGA-44-6147      TCGA-44-6148 
"FCRL1 WILD-TYPE" "FCRL1 WILD-TYPE" "FCRL1 WILD-TYPE" "FCRL1 WILD-TYPE" 
     TCGA-44-6774      TCGA-44-6775      TCGA-44-6776      TCGA-44-6777 
"FCRL1 WILD-TYPE" "FCRL1 WILD-TYPE" "FCRL1 WILD-TYPE" "FCRL1 WILD-TYPE" 
     TCGA-44-6778      TCGA-44-6779      TCGA-49-4486      TCGA-49-4487 
"FCRL1 WILD-TYPE" "FCRL1 WILD-TYPE"   "FCRL1 MUTATED"   "FCRL1 MUTATED" 
     TCGA-49-4488      TCGA-49-4490      TCGA-49-4494      TCGA-49-4501 
"FCRL1 WILD-TYPE" "FCRL1 WILD-TYPE" "FCRL1 WILD-TYPE" "FCRL1 WILD-TYPE" 
     TCGA-49-4505      TCGA-49-4506      TCGA-49-4507      TCGA-49-4510 
"FCRL1 WILD-TYPE" "FCRL1 WILD-TYPE" "FCRL1 WILD-TYPE" "FCRL1 WILD-TYPE" 
     TCGA-49-4512      TCGA-49-4514      TCGA-49-6742      TCGA-49-6743 
"FCRL1 WILD-TYPE" "FCRL1 WILD-TYPE" "FCRL1 WILD-TYPE" "FCRL1 WILD-TYPE" 
     TCGA-49-6744      TCGA-49-6745      TCGA-50-5044      TCGA-50-5045 
"FCRL1 WILD-TYPE" "FCRL1 WILD-TYPE" "FCRL1 WILD-TYPE" "FCRL1 WILD-TYPE" 
     TCGA-50-5049      TCGA-50-5051      TCGA-50-5055      TCGA-50-5066 
  "FCRL1 MUTATED" "FCRL1 WILD-TYPE" "FCRL1 WILD-TYPE" "FCRL1 WILD-TYPE" 
     TCGA-50-5068      TCGA-50-5072      TCGA-50-5930      TCGA-50-5931 
"FCRL1 WILD-TYPE" "FCRL1 WILD-TYPE" "FCRL1 WILD-TYPE" "FCRL1 WILD-TYPE" 
     TCGA-50-5932      TCGA-50-5933      TCGA-50-5935      TCGA-50-5936 
"FCRL1 WILD-TYPE" "FCRL1 WILD-TYPE" "FCRL1 WILD-TYPE" "FCRL1 WILD-TYPE" 
     TCGA-50-5939      TCGA-50-5941      TCGA-50-5942      TCGA-50-5944 
"FCRL1 WILD-TYPE" "FCRL1 WILD-TYPE" "FCRL1 WILD-TYPE" "FCRL1 WILD-TYPE" 
     TCGA-50-5946      TCGA-50-6590      TCGA-50-6591      TCGA-50-6592 
"FCRL1 WILD-TYPE" "FCRL1 WILD-TYPE" "FCRL1 WILD-TYPE" "FCRL1 WILD-TYPE" 
     TCGA-50-6593      TCGA-50-6594      TCGA-50-6595      TCGA-50-6597 
"FCRL1 WILD-TYPE" "FCRL1 WILD-TYPE" "FCRL1 WILD-TYPE" "FCRL1 WILD-TYPE" 
     TCGA-55-1592      TCGA-55-1594      TCGA-55-1595      TCGA-55-1596 
"FCRL1 WILD-TYPE" "FCRL1 WILD-TYPE" "FCRL1 WILD-TYPE" "FCRL1 WILD-TYPE" 
     TCGA-55-5899      TCGA-55-6543      TCGA-55-6642      TCGA-55-6712 
"FCRL1 WILD-TYPE" "FCRL1 WILD-TYPE" "FCRL1 WILD-TYPE" "FCRL1 WILD-TYPE" 
     TCGA-64-1676      TCGA-64-1677      TCGA-64-1678      TCGA-64-1680 
"FCRL1 WILD-TYPE" "FCRL1 WILD-TYPE" "FCRL1 WILD-TYPE" "FCRL1 WILD-TYPE" 
     TCGA-64-5774      TCGA-64-5775      TCGA-64-5778      TCGA-64-5779 
"FCRL1 WILD-TYPE" "FCRL1 WILD-TYPE" "FCRL1 WILD-TYPE" "FCRL1 WILD-TYPE" 
     TCGA-64-5781      TCGA-64-5815      TCGA-67-3770      TCGA-67-3771 
"FCRL1 WILD-TYPE" "FCRL1 WILD-TYPE" "FCRL1 WILD-TYPE" "FCRL1 WILD-TYPE" 
     TCGA-67-3772      TCGA-67-3773      TCGA-67-3774      TCGA-67-6215 
"FCRL1 WILD-TYPE" "FCRL1 WILD-TYPE" "FCRL1 WILD-TYPE" "FCRL1 WILD-TYPE" 
     TCGA-67-6216      TCGA-67-6217      TCGA-71-6725      TCGA-73-4658 
"FCRL1 WILD-TYPE" "FCRL1 WILD-TYPE" "FCRL1 WILD-TYPE" "FCRL1 WILD-TYPE" 
     TCGA-73-4659      TCGA-73-4662      TCGA-73-4666      TCGA-73-4668 
"FCRL1 WILD-TYPE" "FCRL1 WILD-TYPE" "FCRL1 WILD-TYPE"   "FCRL1 MUTATED" 
     TCGA-73-4670      TCGA-73-4675      TCGA-73-4676      TCGA-73-4677 
"FCRL1 WILD-TYPE" "FCRL1 WILD-TYPE" "FCRL1 WILD-TYPE" "FCRL1 WILD-TYPE" 
     TCGA-91-6828      TCGA-91-6829      TCGA-91-6831      TCGA-91-6835 
"FCRL1 WILD-TYPE" "FCRL1 WILD-TYPE" "FCRL1 WILD-TYPE" "FCRL1 WILD-TYPE" 
     TCGA-91-6836 
"FCRL1 WILD-TYPE" 
     TCGA-05-4249      TCGA-05-4250      TCGA-05-4382      TCGA-05-4384 
"FCRL1 WILD-TYPE" "FCRL1 WILD-TYPE" "FCRL1 WILD-TYPE" "FCRL1 WILD-TYPE" 
     TCGA-05-4390      TCGA-05-4396      TCGA-05-4397      TCGA-05-4398 
"FCRL1 WILD-TYPE" "FCRL1 WILD-TYPE" "FCRL1 WILD-TYPE" "FCRL1 WILD-TYPE" 
     TCGA-05-4402      TCGA-05-4405      TCGA-05-4415      TCGA-05-4417 
"FCRL1 WILD-TYPE" "FCRL1 WILD-TYPE" "FCRL1 WILD-TYPE" "FCRL1 WILD-TYPE" 
     TCGA-05-4418      TCGA-05-4420      TCGA-05-4424      TCGA-05-4426 
"FCRL1 WILD-TYPE" "FCRL1 WILD-TYPE" "FCRL1 WILD-TYPE" "FCRL1 WILD-TYPE" 
     TCGA-05-4427      TCGA-05-4430      TCGA-05-4432      TCGA-05-4433 
"FCRL1 WILD-TYPE" "FCRL1 WILD-TYPE" "FCRL1 WILD-TYPE" "FCRL1 WILD-TYPE" 
     TCGA-05-4434      TCGA-05-5420      TCGA-05-5423      TCGA-05-5425 
"FCRL1 WILD-TYPE" "FCRL1 WILD-TYPE" "FCRL1 WILD-TYPE" "FCRL1 WILD-TYPE" 
     TCGA-05-5429      TCGA-05-5715      TCGA-35-3615      TCGA-35-4122 
"FCRL1 WILD-TYPE" "FCRL1 WILD-TYPE" "FCRL1 WILD-TYPE" "FCRL1 WILD-TYPE" 
     TCGA-35-4123      TCGA-35-5375      TCGA-38-4625      TCGA-38-4626 
"FCRL1 WILD-TYPE"   "FCRL1 MUTATED" "FCRL1 WILD-TYPE" "FCRL1 WILD-TYPE" 
     TCGA-38-4627      TCGA-38-4628      TCGA-38-4629      TCGA-38-4630 
"FCRL1 WILD-TYPE" "FCRL1 WILD-TYPE" "FCRL1 WILD-TYPE" "FCRL1 WILD-TYPE" 
     TCGA-38-4631      TCGA-38-4632      TCGA-38-6178      TCGA-44-2655 
"FCRL1 WILD-TYPE" "FCRL1 WILD-TYPE" "FCRL1 WILD-TYPE"   "FCRL1 MUTATED" 
     TCGA-44-2656      TCGA-44-2657      TCGA-44-2659      TCGA-44-2661 
"FCRL1 WILD-TYPE" "FCRL1 WILD-TYPE" "FCRL1 WILD-TYPE" "FCRL1 WILD-TYPE" 
     TCGA-44-2662      TCGA-44-2665      TCGA-44-2666      TCGA-44-2668 
"FCRL1 WILD-TYPE" "FCRL1 WILD-TYPE" "FCRL1 WILD-TYPE" "FCRL1 WILD-TYPE" 
     TCGA-44-3396      TCGA-44-3398      TCGA-44-3918      TCGA-44-3919 
"FCRL1 WILD-TYPE" "FCRL1 WILD-TYPE" "FCRL1 WILD-TYPE" "FCRL1 WILD-TYPE" 
     TCGA-44-4112      TCGA-44-5643      TCGA-44-5645      TCGA-44-6144 
"FCRL1 WILD-TYPE" "FCRL1 WILD-TYPE" "FCRL1 WILD-TYPE" "FCRL1 WILD-TYPE" 
     TCGA-44-6145      TCGA-44-6146      TCGA-44-6147      TCGA-44-6148 
"FCRL1 WILD-TYPE" "FCRL1 WILD-TYPE" "FCRL1 WILD-TYPE" "FCRL1 WILD-TYPE" 
     TCGA-44-6774      TCGA-44-6775      TCGA-44-6776      TCGA-44-6777 
"FCRL1 WILD-TYPE" "FCRL1 WILD-TYPE" "FCRL1 WILD-TYPE" "FCRL1 WILD-TYPE" 
     TCGA-44-6778      TCGA-44-6779      TCGA-49-4486      TCGA-49-4487 
"FCRL1 WILD-TYPE" "FCRL1 WILD-TYPE"   "FCRL1 MUTATED"   "FCRL1 MUTATED" 
     TCGA-49-4488      TCGA-49-4490      TCGA-49-4494      TCGA-49-4501 
"FCRL1 WILD-TYPE" "FCRL1 WILD-TYPE" "FCRL1 WILD-TYPE" "FCRL1 WILD-TYPE" 
     TCGA-49-4505      TCGA-49-4506      TCGA-49-4507      TCGA-49-4510 
"FCRL1 WILD-TYPE" "FCRL1 WILD-TYPE" "FCRL1 WILD-TYPE" "FCRL1 WILD-TYPE" 
     TCGA-49-4512      TCGA-49-4514      TCGA-49-6742      TCGA-49-6743 
"FCRL1 WILD-TYPE" "FCRL1 WILD-TYPE" "FCRL1 WILD-TYPE" "FCRL1 WILD-TYPE" 
     TCGA-49-6744      TCGA-49-6745      TCGA-50-5044      TCGA-50-5045 
"FCRL1 WILD-TYPE" "FCRL1 WILD-TYPE" "FCRL1 WILD-TYPE" "FCRL1 WILD-TYPE" 
     TCGA-50-5049      TCGA-50-5051      TCGA-50-5055      TCGA-50-5066 
  "FCRL1 MUTATED" "FCRL1 WILD-TYPE" "FCRL1 WILD-TYPE" "FCRL1 WILD-TYPE" 
     TCGA-50-5068      TCGA-50-5072      TCGA-50-5930      TCGA-50-5931 
"FCRL1 WILD-TYPE" "FCRL1 WILD-TYPE" "FCRL1 WILD-TYPE" "FCRL1 WILD-TYPE" 
     TCGA-50-5932      TCGA-50-5933      TCGA-50-5935      TCGA-50-5936 
"FCRL1 WILD-TYPE" "FCRL1 WILD-TYPE" "FCRL1 WILD-TYPE" "FCRL1 WILD-TYPE" 
     TCGA-50-5939      TCGA-50-5941      TCGA-50-5942      TCGA-50-5944 
"FCRL1 WILD-TYPE" "FCRL1 WILD-TYPE" "FCRL1 WILD-TYPE" "FCRL1 WILD-TYPE" 
     TCGA-50-5946      TCGA-50-6590      TCGA-50-6591      TCGA-50-6592 
"FCRL1 WILD-TYPE" "FCRL1 WILD-TYPE" "FCRL1 WILD-TYPE" "FCRL1 WILD-TYPE" 
     TCGA-50-6593      TCGA-50-6594      TCGA-50-6595      TCGA-50-6597 
"FCRL1 WILD-TYPE" "FCRL1 WILD-TYPE" "FCRL1 WILD-TYPE" "FCRL1 WILD-TYPE" 
     TCGA-55-1592      TCGA-55-1594      TCGA-55-1595      TCGA-55-1596 
"FCRL1 WILD-TYPE" "FCRL1 WILD-TYPE" "FCRL1 WILD-TYPE" "FCRL1 WILD-TYPE" 
     TCGA-55-5899      TCGA-55-6543      TCGA-55-6642      TCGA-55-6712 
"FCRL1 WILD-TYPE" "FCRL1 WILD-TYPE" "FCRL1 WILD-TYPE" "FCRL1 WILD-TYPE" 
     TCGA-64-1676      TCGA-64-1677      TCGA-64-1678      TCGA-64-1680 
"FCRL1 WILD-TYPE" "FCRL1 WILD-TYPE" "FCRL1 WILD-TYPE" "FCRL1 WILD-TYPE" 
     TCGA-64-5774      TCGA-64-5775      TCGA-64-5778      TCGA-64-5779 
"FCRL1 WILD-TYPE" "FCRL1 WILD-TYPE" "FCRL1 WILD-TYPE" "FCRL1 WILD-TYPE" 
     TCGA-64-5781      TCGA-64-5815      TCGA-67-3770      TCGA-67-3771 
"FCRL1 WILD-TYPE" "FCRL1 WILD-TYPE" "FCRL1 WILD-TYPE" "FCRL1 WILD-TYPE" 
     TCGA-67-3772      TCGA-67-3773      TCGA-67-3774      TCGA-67-6215 
"FCRL1 WILD-TYPE" "FCRL1 WILD-TYPE" "FCRL1 WILD-TYPE" "FCRL1 WILD-TYPE" 
     TCGA-67-6216      TCGA-67-6217      TCGA-71-6725      TCGA-73-4658 
"FCRL1 WILD-TYPE" "FCRL1 WILD-TYPE" "FCRL1 WILD-TYPE" "FCRL1 WILD-TYPE" 
     TCGA-73-4659      TCGA-73-4662      TCGA-73-4666      TCGA-73-4668 
"FCRL1 WILD-TYPE" "FCRL1 WILD-TYPE" "FCRL1 WILD-TYPE"   "FCRL1 MUTATED" 
     TCGA-73-4670      TCGA-73-4675      TCGA-73-4676      TCGA-73-4677 
"FCRL1 WILD-TYPE" "FCRL1 WILD-TYPE" "FCRL1 WILD-TYPE" "FCRL1 WILD-TYPE" 
     TCGA-91-6828      TCGA-91-6829      TCGA-91-6831      TCGA-91-6835 
"FCRL1 WILD-TYPE" "FCRL1 WILD-TYPE" "FCRL1 WILD-TYPE" "FCRL1 WILD-TYPE" 
     TCGA-91-6836 
"FCRL1 WILD-TYPE" 
     TCGA-05-4249      TCGA-05-4250      TCGA-05-4382      TCGA-05-4384 
"FCRL1 WILD-TYPE" "FCRL1 WILD-TYPE" "FCRL1 WILD-TYPE" "FCRL1 WILD-TYPE" 
     TCGA-05-4390      TCGA-05-4396      TCGA-05-4397      TCGA-05-4398 
"FCRL1 WILD-TYPE" "FCRL1 WILD-TYPE" "FCRL1 WILD-TYPE" "FCRL1 WILD-TYPE" 
     TCGA-05-4402      TCGA-05-4405      TCGA-05-4415      TCGA-05-4417 
"FCRL1 WILD-TYPE" "FCRL1 WILD-TYPE" "FCRL1 WILD-TYPE" "FCRL1 WILD-TYPE" 
     TCGA-05-4418      TCGA-05-4420      TCGA-05-4424      TCGA-05-4426 
"FCRL1 WILD-TYPE" "FCRL1 WILD-TYPE" "FCRL1 WILD-TYPE" "FCRL1 WILD-TYPE" 
     TCGA-05-4427      TCGA-05-4430      TCGA-05-4432      TCGA-05-4433 
"FCRL1 WILD-TYPE" "FCRL1 WILD-TYPE" "FCRL1 WILD-TYPE" "FCRL1 WILD-TYPE" 
     TCGA-05-4434      TCGA-05-5420      TCGA-05-5423      TCGA-05-5425 
"FCRL1 WILD-TYPE" "FCRL1 WILD-TYPE" "FCRL1 WILD-TYPE" "FCRL1 WILD-TYPE" 
     TCGA-05-5429      TCGA-05-5715      TCGA-35-3615      TCGA-35-4122 
"FCRL1 WILD-TYPE" "FCRL1 WILD-TYPE" "FCRL1 WILD-TYPE" "FCRL1 WILD-TYPE" 
     TCGA-35-4123      TCGA-35-5375      TCGA-38-4625      TCGA-38-4626 
"FCRL1 WILD-TYPE"   "FCRL1 MUTATED" "FCRL1 WILD-TYPE" "FCRL1 WILD-TYPE" 
     TCGA-38-4627      TCGA-38-4628      TCGA-38-4629      TCGA-38-4630 
"FCRL1 WILD-TYPE" "FCRL1 WILD-TYPE" "FCRL1 WILD-TYPE" "FCRL1 WILD-TYPE" 
     TCGA-38-4631      TCGA-38-4632      TCGA-38-6178      TCGA-44-2655 
"FCRL1 WILD-TYPE" "FCRL1 WILD-TYPE" "FCRL1 WILD-TYPE"   "FCRL1 MUTATED" 
     TCGA-44-2656      TCGA-44-2657      TCGA-44-2659      TCGA-44-2661 
"FCRL1 WILD-TYPE" "FCRL1 WILD-TYPE" "FCRL1 WILD-TYPE" "FCRL1 WILD-TYPE" 
     TCGA-44-2662      TCGA-44-2665      TCGA-44-2666      TCGA-44-2668 
"FCRL1 WILD-TYPE" "FCRL1 WILD-TYPE" "FCRL1 WILD-TYPE" "FCRL1 WILD-TYPE" 
     TCGA-44-3396      TCGA-44-3398      TCGA-44-3918      TCGA-44-3919 
"FCRL1 WILD-TYPE" "FCRL1 WILD-TYPE" "FCRL1 WILD-TYPE" "FCRL1 WILD-TYPE" 
     TCGA-44-4112      TCGA-44-5643      TCGA-44-5645      TCGA-44-6144 
"FCRL1 WILD-TYPE" "FCRL1 WILD-TYPE" "FCRL1 WILD-TYPE" "FCRL1 WILD-TYPE" 
     TCGA-44-6145      TCGA-44-6146      TCGA-44-6147      TCGA-44-6148 
"FCRL1 WILD-TYPE" "FCRL1 WILD-TYPE" "FCRL1 WILD-TYPE" "FCRL1 WILD-TYPE" 
     TCGA-44-6774      TCGA-44-6775      TCGA-44-6776      TCGA-44-6777 
"FCRL1 WILD-TYPE" "FCRL1 WILD-TYPE" "FCRL1 WILD-TYPE" "FCRL1 WILD-TYPE" 
     TCGA-44-6778      TCGA-44-6779      TCGA-49-4486      TCGA-49-4487 
"FCRL1 WILD-TYPE" "FCRL1 WILD-TYPE"   "FCRL1 MUTATED"   "FCRL1 MUTATED" 
     TCGA-49-4488      TCGA-49-4490      TCGA-49-4494      TCGA-49-4501 
"FCRL1 WILD-TYPE" "FCRL1 WILD-TYPE" "FCRL1 WILD-TYPE" "FCRL1 WILD-TYPE" 
     TCGA-49-4505      TCGA-49-4506      TCGA-49-4507      TCGA-49-4510 
"FCRL1 WILD-TYPE" "FCRL1 WILD-TYPE" "FCRL1 WILD-TYPE" "FCRL1 WILD-TYPE" 
     TCGA-49-4512      TCGA-49-4514      TCGA-49-6742      TCGA-49-6743 
"FCRL1 WILD-TYPE" "FCRL1 WILD-TYPE" "FCRL1 WILD-TYPE" "FCRL1 WILD-TYPE" 
     TCGA-49-6744      TCGA-49-6745      TCGA-50-5044      TCGA-50-5045 
"FCRL1 WILD-TYPE" "FCRL1 WILD-TYPE" "FCRL1 WILD-TYPE" "FCRL1 WILD-TYPE" 
     TCGA-50-5049      TCGA-50-5051      TCGA-50-5055      TCGA-50-5066 
  "FCRL1 MUTATED" "FCRL1 WILD-TYPE" "FCRL1 WILD-TYPE" "FCRL1 WILD-TYPE" 
     TCGA-50-5068      TCGA-50-5072      TCGA-50-5930      TCGA-50-5931 
"FCRL1 WILD-TYPE" "FCRL1 WILD-TYPE" "FCRL1 WILD-TYPE" "FCRL1 WILD-TYPE" 
     TCGA-50-5932      TCGA-50-5933      TCGA-50-5935      TCGA-50-5936 
"FCRL1 WILD-TYPE" "FCRL1 WILD-TYPE" "FCRL1 WILD-TYPE" "FCRL1 WILD-TYPE" 
     TCGA-50-5939      TCGA-50-5941      TCGA-50-5942      TCGA-50-5944 
"FCRL1 WILD-TYPE" "FCRL1 WILD-TYPE" "FCRL1 WILD-TYPE" "FCRL1 WILD-TYPE" 
     TCGA-50-5946      TCGA-50-6590      TCGA-50-6591      TCGA-50-6592 
"FCRL1 WILD-TYPE" "FCRL1 WILD-TYPE" "FCRL1 WILD-TYPE" "FCRL1 WILD-TYPE" 
     TCGA-50-6593      TCGA-50-6594      TCGA-50-6595      TCGA-50-6597 
"FCRL1 WILD-TYPE" "FCRL1 WILD-TYPE" "FCRL1 WILD-TYPE" "FCRL1 WILD-TYPE" 
     TCGA-55-1592      TCGA-55-1594      TCGA-55-1595      TCGA-55-1596 
"FCRL1 WILD-TYPE" "FCRL1 WILD-TYPE" "FCRL1 WILD-TYPE" "FCRL1 WILD-TYPE" 
     TCGA-55-5899      TCGA-55-6543      TCGA-55-6642      TCGA-55-6712 
"FCRL1 WILD-TYPE" "FCRL1 WILD-TYPE" "FCRL1 WILD-TYPE" "FCRL1 WILD-TYPE" 
     TCGA-64-1676      TCGA-64-1677      TCGA-64-1678      TCGA-64-1680 
"FCRL1 WILD-TYPE" "FCRL1 WILD-TYPE" "FCRL1 WILD-TYPE" "FCRL1 WILD-TYPE" 
     TCGA-64-5774      TCGA-64-5775      TCGA-64-5778      TCGA-64-5779 
"FCRL1 WILD-TYPE" "FCRL1 WILD-TYPE" "FCRL1 WILD-TYPE" "FCRL1 WILD-TYPE" 
     TCGA-64-5781      TCGA-64-5815      TCGA-67-3770      TCGA-67-3771 
"FCRL1 WILD-TYPE" "FCRL1 WILD-TYPE" "FCRL1 WILD-TYPE" "FCRL1 WILD-TYPE" 
     TCGA-67-3772      TCGA-67-3773      TCGA-67-3774      TCGA-67-6215 
"FCRL1 WILD-TYPE" "FCRL1 WILD-TYPE" "FCRL1 WILD-TYPE" "FCRL1 WILD-TYPE" 
     TCGA-67-6216      TCGA-67-6217      TCGA-71-6725      TCGA-73-4658 
"FCRL1 WILD-TYPE" "FCRL1 WILD-TYPE" "FCRL1 WILD-TYPE" "FCRL1 WILD-TYPE" 
     TCGA-73-4659      TCGA-73-4662      TCGA-73-4666      TCGA-73-4668 
"FCRL1 WILD-TYPE" "FCRL1 WILD-TYPE" "FCRL1 WILD-TYPE"   "FCRL1 MUTATED" 
     TCGA-73-4670      TCGA-73-4675      TCGA-73-4676      TCGA-73-4677 
"FCRL1 WILD-TYPE" "FCRL1 WILD-TYPE" "FCRL1 WILD-TYPE" "FCRL1 WILD-TYPE" 
     TCGA-91-6828      TCGA-91-6829      TCGA-91-6831      TCGA-91-6835 
"FCRL1 WILD-TYPE" "FCRL1 WILD-TYPE" "FCRL1 WILD-TYPE" "FCRL1 WILD-TYPE" 
     TCGA-91-6836 
"FCRL1 WILD-TYPE" 
[1] "hr=" "1.9"
D152V2, continuous
D152V3, binary
[1] "tbl2"
                 cls
clus              [,1] [,2]
  FCRL1 MUTATED      3    3
  FCRL1 WILD-TYPE   90   76
        clus
vv       FCRL1 MUTATED FCRL1 WILD-TYPE
  FEMALE             3              90
  MALE               3              76
D152V4, continuous
[1] "Remove cluster labels:" "FCRL1 MUTATED"         
clus
  FCRL1 MUTATED FCRL1 WILD-TYPE 
              2              10 
     TCGA-35-4122      TCGA-35-4123      TCGA-64-1677      TCGA-64-5778 
"FCRL1 WILD-TYPE" "FCRL1 WILD-TYPE" "FCRL1 WILD-TYPE" "FCRL1 WILD-TYPE" 
     TCGA-71-6725      TCGA-73-4659      TCGA-73-4662      TCGA-73-4666 
"FCRL1 WILD-TYPE" "FCRL1 WILD-TYPE" "FCRL1 WILD-TYPE" "FCRL1 WILD-TYPE" 
     TCGA-73-4676      TCGA-75-5122 
"FCRL1 WILD-TYPE" "FCRL1 WILD-TYPE" 
D152V5, multiclass
D152V6, multiclass
    clus
vv   FCRL1 MUTATED FCRL1 WILD-TYPE
  T1             3              38
  T2             3             105
  T3             0              14
  T4             0               8
D152V7, multiclass
       clus
vv      FCRL1 MUTATED FCRL1 WILD-TYPE
  N0                4              91
  N1                1              36
  N2+N3             1              34
D152V8, multiclass
    clus
vv   FCRL1 MUTATED FCRL1 WILD-TYPE
  M0             6             131
  M1             0               9
  MX             0              22
D152V9, multiclass
     clus
vv    FCRL1 MUTATED FCRL1 WILD-TYPE
  I               4              84
  II              1              32
  III             1              38
  IV              0               9
D152V10, binary
[1] "tbl2"
                 cls
clus              [,1] [,2]
  FCRL1 MUTATED      1    5
  FCRL1 WILD-TYPE   15  151
     clus
vv    FCRL1 MUTATED FCRL1 WILD-TYPE
  NO              1              15
  YES             5             151
D152V11, continuous
D152V12, continuous
D152V13, multiclass
                                             clus
vv                                            FCRL1 MUTATED FCRL1 WILD-TYPE
  CURRENT REFORMED SMOKER FOR < OR = 15 YEARS             3              59
  CURRENT REFORMED SMOKER FOR > 15 YEARS                  2              44
  CURRENT SMOKER                                          0              28
  LIFELONG NON-SMOKER                                     0              24
D152V14, continuous

Clustering(153) Variable = TUBA3C MUTATION ANALYSIS
D153V1, survival
                  sevent
clus2               0  1
  TUBA3C MUTATED    4  1
  TUBA3C WILD-TYPE 95 49
  TUBA3C MUTATED TUBA3C WILD-TYPE 
               5              144 
  TUBA3C MUTATED TUBA3C WILD-TYPE 
               1               49 
$`TUBA3C MUTATED`
TCGA-05-4382 TCGA-35-4122 TCGA-49-4487 TCGA-64-5781 TCGA-91-6828 
       19.92         7.36        28.11        39.52         1.22 

$`TUBA3C WILD-TYPE`
TCGA-05-4249 TCGA-05-4250 TCGA-05-4384 TCGA-05-4390 TCGA-05-4396 TCGA-05-4397 
       38.07         3.98        14.01        37.02         9.96        24.03 
TCGA-05-4398 TCGA-05-4402 TCGA-05-4405 TCGA-05-4415 TCGA-05-4417 TCGA-05-4418 
       47.05         8.02        20.05         2.96        14.93         8.98 
TCGA-05-4420 TCGA-05-4424 TCGA-05-4426 TCGA-05-4427 TCGA-05-4430 TCGA-05-4432 
       29.95        30.02        26.01        26.01        25.02        25.02 
TCGA-05-4433 TCGA-05-4434 TCGA-05-5420 TCGA-05-5423 TCGA-05-5425 TCGA-05-5429 
       24.00        15.02         1.02         4.96         2.96         0.99 
TCGA-05-5715 TCGA-35-3615 TCGA-35-4123 TCGA-35-5375 TCGA-38-4625 TCGA-38-4626 
        2.04         0.46         5.95         8.68        47.61        85.32 
TCGA-38-4627 TCGA-38-4628 TCGA-38-4629 TCGA-38-4630 TCGA-38-4631 TCGA-38-4632 
       37.71        49.02        28.37        35.28        11.64        44.61 
TCGA-38-6178 TCGA-44-2655 TCGA-44-2656 TCGA-44-2657 TCGA-44-2659 TCGA-44-2661 
        5.19        18.87        19.10        13.15        17.39         3.39 
TCGA-44-2662 TCGA-44-2665 TCGA-44-2666 TCGA-44-2668 TCGA-44-3396 TCGA-44-3398 
       15.78        13.15         3.19         8.09        10.22         8.32 
TCGA-44-3918 TCGA-44-3919 TCGA-44-4112 TCGA-44-5643 TCGA-44-5645 TCGA-44-6144 
        6.44         6.21         4.60         3.48         6.84         0.30 
TCGA-44-6145 TCGA-44-6146 TCGA-44-6147 TCGA-44-6148 TCGA-44-6774 TCGA-44-6775 
        3.35         9.93         7.76         3.12         5.42         2.70 
TCGA-44-6776 TCGA-44-6777 TCGA-44-6778 TCGA-44-6779 TCGA-49-4486 TCGA-49-4488 
       63.72        32.45        36.49        16.41        76.21        28.57 
TCGA-49-4490 TCGA-49-4494 TCGA-49-4501 TCGA-49-4505 TCGA-49-4506 TCGA-49-4507 
       12.66        35.54        46.72        14.07        32.84         8.81 
TCGA-49-4510 TCGA-49-4512 TCGA-49-4514 TCGA-49-6742 TCGA-49-6743 TCGA-49-6744 
       29.46        29.75        43.20        15.02        12.13        12.99 
TCGA-49-6745 TCGA-50-5044 TCGA-50-5045 TCGA-50-5049 TCGA-50-5051 TCGA-50-5055 
        4.93        20.48        71.47        48.82        14.96        25.81 
TCGA-50-5066 TCGA-50-5068 TCGA-50-5072 TCGA-50-5930 TCGA-50-5931 TCGA-50-5932 
        9.76        49.28         8.05         9.27         8.78        35.87 
TCGA-50-5933 TCGA-50-5935 TCGA-50-5936 TCGA-50-5939 TCGA-50-5941 TCGA-50-5942 
       77.88        21.47         8.45        15.12         9.37         4.44 
TCGA-50-5944 TCGA-50-5946 TCGA-50-6590 TCGA-50-6591 TCGA-50-6592 TCGA-50-6593 
       12.26        11.47        42.31         3.88        25.51        11.05 
TCGA-50-6594 TCGA-50-6595 TCGA-50-6597 TCGA-55-1592 TCGA-55-1594 TCGA-55-1595 
       12.16         6.21        33.37        23.05        38.73        48.62 
TCGA-55-1596 TCGA-55-5899 TCGA-55-6543 TCGA-55-6642 TCGA-55-6712 TCGA-64-1676 
       45.17         2.86         0.07        32.61         0.79        56.81 
TCGA-64-1677 TCGA-64-1678 TCGA-64-1680 TCGA-64-5774 TCGA-64-5775 TCGA-64-5778 
       20.65        39.09        37.02        83.84         0.10        30.44 
TCGA-64-5779 TCGA-64-5815 TCGA-67-3770 TCGA-67-3771 TCGA-67-3772 TCGA-67-3773 
       16.67         7.33         0.99         1.97         0.59         2.04 
TCGA-67-3774 TCGA-67-6215 TCGA-67-6216 TCGA-67-6217 TCGA-71-6725 TCGA-73-4658 
        0.59         0.89         0.69        13.87         2.01        52.57 
TCGA-73-4659 TCGA-73-4662 TCGA-73-4666 TCGA-73-4668 TCGA-73-4670 TCGA-73-4675 
       23.38        29.95        20.28        15.35         0.46         1.32 
TCGA-73-4676 TCGA-73-4677 TCGA-91-6829 TCGA-91-6831 TCGA-91-6835 TCGA-91-6836 
        4.01         1.25        41.33         1.28         1.15         0.36 

  TUBA3C MUTATED TUBA3C WILD-TYPE 
            1.22             0.07 
  TUBA3C MUTATED TUBA3C WILD-TYPE 
           39.52            85.32 
  TUBA3C MUTATED TUBA3C WILD-TYPE 
           19.92            13.51 
[1] "1.2 - 39.5 (19.9)" "0.1 - 85.3 (13.5)"
      TCGA-05-4249       TCGA-05-4250       TCGA-05-4382       TCGA-05-4384 
"TUBA3C WILD-TYPE" "TUBA3C WILD-TYPE"   "TUBA3C MUTATED" "TUBA3C WILD-TYPE" 
      TCGA-05-4390       TCGA-05-4396       TCGA-05-4397       TCGA-05-4398 
"TUBA3C WILD-TYPE" "TUBA3C WILD-TYPE" "TUBA3C WILD-TYPE" "TUBA3C WILD-TYPE" 
      TCGA-05-4402       TCGA-05-4405       TCGA-05-4415       TCGA-05-4417 
"TUBA3C WILD-TYPE" "TUBA3C WILD-TYPE" "TUBA3C WILD-TYPE" "TUBA3C WILD-TYPE" 
      TCGA-05-4418       TCGA-05-4420       TCGA-05-4424       TCGA-05-4426 
"TUBA3C WILD-TYPE" "TUBA3C WILD-TYPE" "TUBA3C WILD-TYPE" "TUBA3C WILD-TYPE" 
      TCGA-05-4427       TCGA-05-4430       TCGA-05-4432       TCGA-05-4433 
"TUBA3C WILD-TYPE" "TUBA3C WILD-TYPE" "TUBA3C WILD-TYPE" "TUBA3C WILD-TYPE" 
      TCGA-05-4434       TCGA-05-5420       TCGA-05-5423       TCGA-05-5425 
"TUBA3C WILD-TYPE" "TUBA3C WILD-TYPE" "TUBA3C WILD-TYPE" "TUBA3C WILD-TYPE" 
      TCGA-05-5429       TCGA-05-5715       TCGA-35-3615       TCGA-35-4122 
"TUBA3C WILD-TYPE" "TUBA3C WILD-TYPE" "TUBA3C WILD-TYPE"   "TUBA3C MUTATED" 
      TCGA-35-4123       TCGA-35-5375       TCGA-38-4625       TCGA-38-4626 
"TUBA3C WILD-TYPE" "TUBA3C WILD-TYPE" "TUBA3C WILD-TYPE" "TUBA3C WILD-TYPE" 
      TCGA-38-4627       TCGA-38-4628       TCGA-38-4629       TCGA-38-4630 
"TUBA3C WILD-TYPE" "TUBA3C WILD-TYPE" "TUBA3C WILD-TYPE" "TUBA3C WILD-TYPE" 
      TCGA-38-4631       TCGA-38-4632       TCGA-38-6178       TCGA-44-2655 
"TUBA3C WILD-TYPE" "TUBA3C WILD-TYPE" "TUBA3C WILD-TYPE" "TUBA3C WILD-TYPE" 
      TCGA-44-2656       TCGA-44-2657       TCGA-44-2659       TCGA-44-2661 
"TUBA3C WILD-TYPE" "TUBA3C WILD-TYPE" "TUBA3C WILD-TYPE" "TUBA3C WILD-TYPE" 
      TCGA-44-2662       TCGA-44-2665       TCGA-44-2666       TCGA-44-2668 
"TUBA3C WILD-TYPE" "TUBA3C WILD-TYPE" "TUBA3C WILD-TYPE" "TUBA3C WILD-TYPE" 
      TCGA-44-3396       TCGA-44-3398       TCGA-44-3918       TCGA-44-3919 
"TUBA3C WILD-TYPE" "TUBA3C WILD-TYPE" "TUBA3C WILD-TYPE" "TUBA3C WILD-TYPE" 
      TCGA-44-4112       TCGA-44-5643       TCGA-44-5645       TCGA-44-6144 
"TUBA3C WILD-TYPE" "TUBA3C WILD-TYPE" "TUBA3C WILD-TYPE" "TUBA3C WILD-TYPE" 
      TCGA-44-6145       TCGA-44-6146       TCGA-44-6147       TCGA-44-6148 
"TUBA3C WILD-TYPE" "TUBA3C WILD-TYPE" "TUBA3C WILD-TYPE" "TUBA3C WILD-TYPE" 
      TCGA-44-6774       TCGA-44-6775       TCGA-44-6776       TCGA-44-6777 
"TUBA3C WILD-TYPE" "TUBA3C WILD-TYPE" "TUBA3C WILD-TYPE" "TUBA3C WILD-TYPE" 
      TCGA-44-6778       TCGA-44-6779       TCGA-49-4486       TCGA-49-4487 
"TUBA3C WILD-TYPE" "TUBA3C WILD-TYPE" "TUBA3C WILD-TYPE"   "TUBA3C MUTATED" 
      TCGA-49-4488       TCGA-49-4490       TCGA-49-4494       TCGA-49-4501 
"TUBA3C WILD-TYPE" "TUBA3C WILD-TYPE" "TUBA3C WILD-TYPE" "TUBA3C WILD-TYPE" 
      TCGA-49-4505       TCGA-49-4506       TCGA-49-4507       TCGA-49-4510 
"TUBA3C WILD-TYPE" "TUBA3C WILD-TYPE" "TUBA3C WILD-TYPE" "TUBA3C WILD-TYPE" 
      TCGA-49-4512       TCGA-49-4514       TCGA-49-6742       TCGA-49-6743 
"TUBA3C WILD-TYPE" "TUBA3C WILD-TYPE" "TUBA3C WILD-TYPE" "TUBA3C WILD-TYPE" 
      TCGA-49-6744       TCGA-49-6745       TCGA-50-5044       TCGA-50-5045 
"TUBA3C WILD-TYPE" "TUBA3C WILD-TYPE" "TUBA3C WILD-TYPE" "TUBA3C WILD-TYPE" 
      TCGA-50-5049       TCGA-50-5051       TCGA-50-5055       TCGA-50-5066 
"TUBA3C WILD-TYPE" "TUBA3C WILD-TYPE" "TUBA3C WILD-TYPE" "TUBA3C WILD-TYPE" 
      TCGA-50-5068       TCGA-50-5072       TCGA-50-5930       TCGA-50-5931 
"TUBA3C WILD-TYPE" "TUBA3C WILD-TYPE" "TUBA3C WILD-TYPE" "TUBA3C WILD-TYPE" 
      TCGA-50-5932       TCGA-50-5933       TCGA-50-5935       TCGA-50-5936 
"TUBA3C WILD-TYPE" "TUBA3C WILD-TYPE" "TUBA3C WILD-TYPE" "TUBA3C WILD-TYPE" 
      TCGA-50-5939       TCGA-50-5941       TCGA-50-5942       TCGA-50-5944 
"TUBA3C WILD-TYPE" "TUBA3C WILD-TYPE" "TUBA3C WILD-TYPE" "TUBA3C WILD-TYPE" 
      TCGA-50-5946       TCGA-50-6590       TCGA-50-6591       TCGA-50-6592 
"TUBA3C WILD-TYPE" "TUBA3C WILD-TYPE" "TUBA3C WILD-TYPE" "TUBA3C WILD-TYPE" 
      TCGA-50-6593       TCGA-50-6594       TCGA-50-6595       TCGA-50-6597 
"TUBA3C WILD-TYPE" "TUBA3C WILD-TYPE" "TUBA3C WILD-TYPE" "TUBA3C WILD-TYPE" 
      TCGA-55-1592       TCGA-55-1594       TCGA-55-1595       TCGA-55-1596 
"TUBA3C WILD-TYPE" "TUBA3C WILD-TYPE" "TUBA3C WILD-TYPE" "TUBA3C WILD-TYPE" 
      TCGA-55-5899       TCGA-55-6543       TCGA-55-6642       TCGA-55-6712 
"TUBA3C WILD-TYPE" "TUBA3C WILD-TYPE" "TUBA3C WILD-TYPE" "TUBA3C WILD-TYPE" 
      TCGA-64-1676       TCGA-64-1677       TCGA-64-1678       TCGA-64-1680 
"TUBA3C WILD-TYPE" "TUBA3C WILD-TYPE" "TUBA3C WILD-TYPE" "TUBA3C WILD-TYPE" 
      TCGA-64-5774       TCGA-64-5775       TCGA-64-5778       TCGA-64-5779 
"TUBA3C WILD-TYPE" "TUBA3C WILD-TYPE" "TUBA3C WILD-TYPE" "TUBA3C WILD-TYPE" 
      TCGA-64-5781       TCGA-64-5815       TCGA-67-3770       TCGA-67-3771 
  "TUBA3C MUTATED" "TUBA3C WILD-TYPE" "TUBA3C WILD-TYPE" "TUBA3C WILD-TYPE" 
      TCGA-67-3772       TCGA-67-3773       TCGA-67-3774       TCGA-67-6215 
"TUBA3C WILD-TYPE" "TUBA3C WILD-TYPE" "TUBA3C WILD-TYPE" "TUBA3C WILD-TYPE" 
      TCGA-67-6216       TCGA-67-6217       TCGA-71-6725       TCGA-73-4658 
"TUBA3C WILD-TYPE" "TUBA3C WILD-TYPE" "TUBA3C WILD-TYPE" "TUBA3C WILD-TYPE" 
      TCGA-73-4659       TCGA-73-4662       TCGA-73-4666       TCGA-73-4668 
"TUBA3C WILD-TYPE" "TUBA3C WILD-TYPE" "TUBA3C WILD-TYPE" "TUBA3C WILD-TYPE" 
      TCGA-73-4670       TCGA-73-4675       TCGA-73-4676       TCGA-73-4677 
"TUBA3C WILD-TYPE" "TUBA3C WILD-TYPE" "TUBA3C WILD-TYPE" "TUBA3C WILD-TYPE" 
      TCGA-91-6828       TCGA-91-6829       TCGA-91-6831       TCGA-91-6835 
  "TUBA3C MUTATED" "TUBA3C WILD-TYPE" "TUBA3C WILD-TYPE" "TUBA3C WILD-TYPE" 
      TCGA-91-6836 
"TUBA3C WILD-TYPE" 
      TCGA-05-4249       TCGA-05-4250       TCGA-05-4382       TCGA-05-4384 
"TUBA3C WILD-TYPE" "TUBA3C WILD-TYPE"   "TUBA3C MUTATED" "TUBA3C WILD-TYPE" 
      TCGA-05-4390       TCGA-05-4396       TCGA-05-4397       TCGA-05-4398 
"TUBA3C WILD-TYPE" "TUBA3C WILD-TYPE" "TUBA3C WILD-TYPE" "TUBA3C WILD-TYPE" 
      TCGA-05-4402       TCGA-05-4405       TCGA-05-4415       TCGA-05-4417 
"TUBA3C WILD-TYPE" "TUBA3C WILD-TYPE" "TUBA3C WILD-TYPE" "TUBA3C WILD-TYPE" 
      TCGA-05-4418       TCGA-05-4420       TCGA-05-4424       TCGA-05-4426 
"TUBA3C WILD-TYPE" "TUBA3C WILD-TYPE" "TUBA3C WILD-TYPE" "TUBA3C WILD-TYPE" 
      TCGA-05-4427       TCGA-05-4430       TCGA-05-4432       TCGA-05-4433 
"TUBA3C WILD-TYPE" "TUBA3C WILD-TYPE" "TUBA3C WILD-TYPE" "TUBA3C WILD-TYPE" 
      TCGA-05-4434       TCGA-05-5420       TCGA-05-5423       TCGA-05-5425 
"TUBA3C WILD-TYPE" "TUBA3C WILD-TYPE" "TUBA3C WILD-TYPE" "TUBA3C WILD-TYPE" 
      TCGA-05-5429       TCGA-05-5715       TCGA-35-3615       TCGA-35-4122 
"TUBA3C WILD-TYPE" "TUBA3C WILD-TYPE" "TUBA3C WILD-TYPE"   "TUBA3C MUTATED" 
      TCGA-35-4123       TCGA-35-5375       TCGA-38-4625       TCGA-38-4626 
"TUBA3C WILD-TYPE" "TUBA3C WILD-TYPE" "TUBA3C WILD-TYPE" "TUBA3C WILD-TYPE" 
      TCGA-38-4627       TCGA-38-4628       TCGA-38-4629       TCGA-38-4630 
"TUBA3C WILD-TYPE" "TUBA3C WILD-TYPE" "TUBA3C WILD-TYPE" "TUBA3C WILD-TYPE" 
      TCGA-38-4631       TCGA-38-4632       TCGA-38-6178       TCGA-44-2655 
"TUBA3C WILD-TYPE" "TUBA3C WILD-TYPE" "TUBA3C WILD-TYPE" "TUBA3C WILD-TYPE" 
      TCGA-44-2656       TCGA-44-2657       TCGA-44-2659       TCGA-44-2661 
"TUBA3C WILD-TYPE" "TUBA3C WILD-TYPE" "TUBA3C WILD-TYPE" "TUBA3C WILD-TYPE" 
      TCGA-44-2662       TCGA-44-2665       TCGA-44-2666       TCGA-44-2668 
"TUBA3C WILD-TYPE" "TUBA3C WILD-TYPE" "TUBA3C WILD-TYPE" "TUBA3C WILD-TYPE" 
      TCGA-44-3396       TCGA-44-3398       TCGA-44-3918       TCGA-44-3919 
"TUBA3C WILD-TYPE" "TUBA3C WILD-TYPE" "TUBA3C WILD-TYPE" "TUBA3C WILD-TYPE" 
      TCGA-44-4112       TCGA-44-5643       TCGA-44-5645       TCGA-44-6144 
"TUBA3C WILD-TYPE" "TUBA3C WILD-TYPE" "TUBA3C WILD-TYPE" "TUBA3C WILD-TYPE" 
      TCGA-44-6145       TCGA-44-6146       TCGA-44-6147       TCGA-44-6148 
"TUBA3C WILD-TYPE" "TUBA3C WILD-TYPE" "TUBA3C WILD-TYPE" "TUBA3C WILD-TYPE" 
      TCGA-44-6774       TCGA-44-6775       TCGA-44-6776       TCGA-44-6777 
"TUBA3C WILD-TYPE" "TUBA3C WILD-TYPE" "TUBA3C WILD-TYPE" "TUBA3C WILD-TYPE" 
      TCGA-44-6778       TCGA-44-6779       TCGA-49-4486       TCGA-49-4487 
"TUBA3C WILD-TYPE" "TUBA3C WILD-TYPE" "TUBA3C WILD-TYPE"   "TUBA3C MUTATED" 
      TCGA-49-4488       TCGA-49-4490       TCGA-49-4494       TCGA-49-4501 
"TUBA3C WILD-TYPE" "TUBA3C WILD-TYPE" "TUBA3C WILD-TYPE" "TUBA3C WILD-TYPE" 
      TCGA-49-4505       TCGA-49-4506       TCGA-49-4507       TCGA-49-4510 
"TUBA3C WILD-TYPE" "TUBA3C WILD-TYPE" "TUBA3C WILD-TYPE" "TUBA3C WILD-TYPE" 
      TCGA-49-4512       TCGA-49-4514       TCGA-49-6742       TCGA-49-6743 
"TUBA3C WILD-TYPE" "TUBA3C WILD-TYPE" "TUBA3C WILD-TYPE" "TUBA3C WILD-TYPE" 
      TCGA-49-6744       TCGA-49-6745       TCGA-50-5044       TCGA-50-5045 
"TUBA3C WILD-TYPE" "TUBA3C WILD-TYPE" "TUBA3C WILD-TYPE" "TUBA3C WILD-TYPE" 
      TCGA-50-5049       TCGA-50-5051       TCGA-50-5055       TCGA-50-5066 
"TUBA3C WILD-TYPE" "TUBA3C WILD-TYPE" "TUBA3C WILD-TYPE" "TUBA3C WILD-TYPE" 
      TCGA-50-5068       TCGA-50-5072       TCGA-50-5930       TCGA-50-5931 
"TUBA3C WILD-TYPE" "TUBA3C WILD-TYPE" "TUBA3C WILD-TYPE" "TUBA3C WILD-TYPE" 
      TCGA-50-5932       TCGA-50-5933       TCGA-50-5935       TCGA-50-5936 
"TUBA3C WILD-TYPE" "TUBA3C WILD-TYPE" "TUBA3C WILD-TYPE" "TUBA3C WILD-TYPE" 
      TCGA-50-5939       TCGA-50-5941       TCGA-50-5942       TCGA-50-5944 
"TUBA3C WILD-TYPE" "TUBA3C WILD-TYPE" "TUBA3C WILD-TYPE" "TUBA3C WILD-TYPE" 
      TCGA-50-5946       TCGA-50-6590       TCGA-50-6591       TCGA-50-6592 
"TUBA3C WILD-TYPE" "TUBA3C WILD-TYPE" "TUBA3C WILD-TYPE" "TUBA3C WILD-TYPE" 
      TCGA-50-6593       TCGA-50-6594       TCGA-50-6595       TCGA-50-6597 
"TUBA3C WILD-TYPE" "TUBA3C WILD-TYPE" "TUBA3C WILD-TYPE" "TUBA3C WILD-TYPE" 
      TCGA-55-1592       TCGA-55-1594       TCGA-55-1595       TCGA-55-1596 
"TUBA3C WILD-TYPE" "TUBA3C WILD-TYPE" "TUBA3C WILD-TYPE" "TUBA3C WILD-TYPE" 
      TCGA-55-5899       TCGA-55-6543       TCGA-55-6642       TCGA-55-6712 
"TUBA3C WILD-TYPE" "TUBA3C WILD-TYPE" "TUBA3C WILD-TYPE" "TUBA3C WILD-TYPE" 
      TCGA-64-1676       TCGA-64-1677       TCGA-64-1678       TCGA-64-1680 
"TUBA3C WILD-TYPE" "TUBA3C WILD-TYPE" "TUBA3C WILD-TYPE" "TUBA3C WILD-TYPE" 
      TCGA-64-5774       TCGA-64-5775       TCGA-64-5778       TCGA-64-5779 
"TUBA3C WILD-TYPE" "TUBA3C WILD-TYPE" "TUBA3C WILD-TYPE" "TUBA3C WILD-TYPE" 
      TCGA-64-5781       TCGA-64-5815       TCGA-67-3770       TCGA-67-3771 
  "TUBA3C MUTATED" "TUBA3C WILD-TYPE" "TUBA3C WILD-TYPE" "TUBA3C WILD-TYPE" 
      TCGA-67-3772       TCGA-67-3773       TCGA-67-3774       TCGA-67-6215 
"TUBA3C WILD-TYPE" "TUBA3C WILD-TYPE" "TUBA3C WILD-TYPE" "TUBA3C WILD-TYPE" 
      TCGA-67-6216       TCGA-67-6217       TCGA-71-6725       TCGA-73-4658 
"TUBA3C WILD-TYPE" "TUBA3C WILD-TYPE" "TUBA3C WILD-TYPE" "TUBA3C WILD-TYPE" 
      TCGA-73-4659       TCGA-73-4662       TCGA-73-4666       TCGA-73-4668 
"TUBA3C WILD-TYPE" "TUBA3C WILD-TYPE" "TUBA3C WILD-TYPE" "TUBA3C WILD-TYPE" 
      TCGA-73-4670       TCGA-73-4675       TCGA-73-4676       TCGA-73-4677 
"TUBA3C WILD-TYPE" "TUBA3C WILD-TYPE" "TUBA3C WILD-TYPE" "TUBA3C WILD-TYPE" 
      TCGA-91-6828       TCGA-91-6829       TCGA-91-6831       TCGA-91-6835 
  "TUBA3C MUTATED" "TUBA3C WILD-TYPE" "TUBA3C WILD-TYPE" "TUBA3C WILD-TYPE" 
      TCGA-91-6836 
"TUBA3C WILD-TYPE" 
      TCGA-05-4249       TCGA-05-4250       TCGA-05-4382       TCGA-05-4384 
"TUBA3C WILD-TYPE" "TUBA3C WILD-TYPE"   "TUBA3C MUTATED" "TUBA3C WILD-TYPE" 
      TCGA-05-4390       TCGA-05-4396       TCGA-05-4397       TCGA-05-4398 
"TUBA3C WILD-TYPE" "TUBA3C WILD-TYPE" "TUBA3C WILD-TYPE" "TUBA3C WILD-TYPE" 
      TCGA-05-4402       TCGA-05-4405       TCGA-05-4415       TCGA-05-4417 
"TUBA3C WILD-TYPE" "TUBA3C WILD-TYPE" "TUBA3C WILD-TYPE" "TUBA3C WILD-TYPE" 
      TCGA-05-4418       TCGA-05-4420       TCGA-05-4424       TCGA-05-4426 
"TUBA3C WILD-TYPE" "TUBA3C WILD-TYPE" "TUBA3C WILD-TYPE" "TUBA3C WILD-TYPE" 
      TCGA-05-4427       TCGA-05-4430       TCGA-05-4432       TCGA-05-4433 
"TUBA3C WILD-TYPE" "TUBA3C WILD-TYPE" "TUBA3C WILD-TYPE" "TUBA3C WILD-TYPE" 
      TCGA-05-4434       TCGA-05-5420       TCGA-05-5423       TCGA-05-5425 
"TUBA3C WILD-TYPE" "TUBA3C WILD-TYPE" "TUBA3C WILD-TYPE" "TUBA3C WILD-TYPE" 
      TCGA-05-5429       TCGA-05-5715       TCGA-35-3615       TCGA-35-4122 
"TUBA3C WILD-TYPE" "TUBA3C WILD-TYPE" "TUBA3C WILD-TYPE"   "TUBA3C MUTATED" 
      TCGA-35-4123       TCGA-35-5375       TCGA-38-4625       TCGA-38-4626 
"TUBA3C WILD-TYPE" "TUBA3C WILD-TYPE" "TUBA3C WILD-TYPE" "TUBA3C WILD-TYPE" 
      TCGA-38-4627       TCGA-38-4628       TCGA-38-4629       TCGA-38-4630 
"TUBA3C WILD-TYPE" "TUBA3C WILD-TYPE" "TUBA3C WILD-TYPE" "TUBA3C WILD-TYPE" 
      TCGA-38-4631       TCGA-38-4632       TCGA-38-6178       TCGA-44-2655 
"TUBA3C WILD-TYPE" "TUBA3C WILD-TYPE" "TUBA3C WILD-TYPE" "TUBA3C WILD-TYPE" 
      TCGA-44-2656       TCGA-44-2657       TCGA-44-2659       TCGA-44-2661 
"TUBA3C WILD-TYPE" "TUBA3C WILD-TYPE" "TUBA3C WILD-TYPE" "TUBA3C WILD-TYPE" 
      TCGA-44-2662       TCGA-44-2665       TCGA-44-2666       TCGA-44-2668 
"TUBA3C WILD-TYPE" "TUBA3C WILD-TYPE" "TUBA3C WILD-TYPE" "TUBA3C WILD-TYPE" 
      TCGA-44-3396       TCGA-44-3398       TCGA-44-3918       TCGA-44-3919 
"TUBA3C WILD-TYPE" "TUBA3C WILD-TYPE" "TUBA3C WILD-TYPE" "TUBA3C WILD-TYPE" 
      TCGA-44-4112       TCGA-44-5643       TCGA-44-5645       TCGA-44-6144 
"TUBA3C WILD-TYPE" "TUBA3C WILD-TYPE" "TUBA3C WILD-TYPE" "TUBA3C WILD-TYPE" 
      TCGA-44-6145       TCGA-44-6146       TCGA-44-6147       TCGA-44-6148 
"TUBA3C WILD-TYPE" "TUBA3C WILD-TYPE" "TUBA3C WILD-TYPE" "TUBA3C WILD-TYPE" 
      TCGA-44-6774       TCGA-44-6775       TCGA-44-6776       TCGA-44-6777 
"TUBA3C WILD-TYPE" "TUBA3C WILD-TYPE" "TUBA3C WILD-TYPE" "TUBA3C WILD-TYPE" 
      TCGA-44-6778       TCGA-44-6779       TCGA-49-4486       TCGA-49-4487 
"TUBA3C WILD-TYPE" "TUBA3C WILD-TYPE" "TUBA3C WILD-TYPE"   "TUBA3C MUTATED" 
      TCGA-49-4488       TCGA-49-4490       TCGA-49-4494       TCGA-49-4501 
"TUBA3C WILD-TYPE" "TUBA3C WILD-TYPE" "TUBA3C WILD-TYPE" "TUBA3C WILD-TYPE" 
      TCGA-49-4505       TCGA-49-4506       TCGA-49-4507       TCGA-49-4510 
"TUBA3C WILD-TYPE" "TUBA3C WILD-TYPE" "TUBA3C WILD-TYPE" "TUBA3C WILD-TYPE" 
      TCGA-49-4512       TCGA-49-4514       TCGA-49-6742       TCGA-49-6743 
"TUBA3C WILD-TYPE" "TUBA3C WILD-TYPE" "TUBA3C WILD-TYPE" "TUBA3C WILD-TYPE" 
      TCGA-49-6744       TCGA-49-6745       TCGA-50-5044       TCGA-50-5045 
"TUBA3C WILD-TYPE" "TUBA3C WILD-TYPE" "TUBA3C WILD-TYPE" "TUBA3C WILD-TYPE" 
      TCGA-50-5049       TCGA-50-5051       TCGA-50-5055       TCGA-50-5066 
"TUBA3C WILD-TYPE" "TUBA3C WILD-TYPE" "TUBA3C WILD-TYPE" "TUBA3C WILD-TYPE" 
      TCGA-50-5068       TCGA-50-5072       TCGA-50-5930       TCGA-50-5931 
"TUBA3C WILD-TYPE" "TUBA3C WILD-TYPE" "TUBA3C WILD-TYPE" "TUBA3C WILD-TYPE" 
      TCGA-50-5932       TCGA-50-5933       TCGA-50-5935       TCGA-50-5936 
"TUBA3C WILD-TYPE" "TUBA3C WILD-TYPE" "TUBA3C WILD-TYPE" "TUBA3C WILD-TYPE" 
      TCGA-50-5939       TCGA-50-5941       TCGA-50-5942       TCGA-50-5944 
"TUBA3C WILD-TYPE" "TUBA3C WILD-TYPE" "TUBA3C WILD-TYPE" "TUBA3C WILD-TYPE" 
      TCGA-50-5946       TCGA-50-6590       TCGA-50-6591       TCGA-50-6592 
"TUBA3C WILD-TYPE" "TUBA3C WILD-TYPE" "TUBA3C WILD-TYPE" "TUBA3C WILD-TYPE" 
      TCGA-50-6593       TCGA-50-6594       TCGA-50-6595       TCGA-50-6597 
"TUBA3C WILD-TYPE" "TUBA3C WILD-TYPE" "TUBA3C WILD-TYPE" "TUBA3C WILD-TYPE" 
      TCGA-55-1592       TCGA-55-1594       TCGA-55-1595       TCGA-55-1596 
"TUBA3C WILD-TYPE" "TUBA3C WILD-TYPE" "TUBA3C WILD-TYPE" "TUBA3C WILD-TYPE" 
      TCGA-55-5899       TCGA-55-6543       TCGA-55-6642       TCGA-55-6712 
"TUBA3C WILD-TYPE" "TUBA3C WILD-TYPE" "TUBA3C WILD-TYPE" "TUBA3C WILD-TYPE" 
      TCGA-64-1676       TCGA-64-1677       TCGA-64-1678       TCGA-64-1680 
"TUBA3C WILD-TYPE" "TUBA3C WILD-TYPE" "TUBA3C WILD-TYPE" "TUBA3C WILD-TYPE" 
      TCGA-64-5774       TCGA-64-5775       TCGA-64-5778       TCGA-64-5779 
"TUBA3C WILD-TYPE" "TUBA3C WILD-TYPE" "TUBA3C WILD-TYPE" "TUBA3C WILD-TYPE" 
      TCGA-64-5781       TCGA-64-5815       TCGA-67-3770       TCGA-67-3771 
  "TUBA3C MUTATED" "TUBA3C WILD-TYPE" "TUBA3C WILD-TYPE" "TUBA3C WILD-TYPE" 
      TCGA-67-3772       TCGA-67-3773       TCGA-67-3774       TCGA-67-6215 
"TUBA3C WILD-TYPE" "TUBA3C WILD-TYPE" "TUBA3C WILD-TYPE" "TUBA3C WILD-TYPE" 
      TCGA-67-6216       TCGA-67-6217       TCGA-71-6725       TCGA-73-4658 
"TUBA3C WILD-TYPE" "TUBA3C WILD-TYPE" "TUBA3C WILD-TYPE" "TUBA3C WILD-TYPE" 
      TCGA-73-4659       TCGA-73-4662       TCGA-73-4666       TCGA-73-4668 
"TUBA3C WILD-TYPE" "TUBA3C WILD-TYPE" "TUBA3C WILD-TYPE" "TUBA3C WILD-TYPE" 
      TCGA-73-4670       TCGA-73-4675       TCGA-73-4676       TCGA-73-4677 
"TUBA3C WILD-TYPE" "TUBA3C WILD-TYPE" "TUBA3C WILD-TYPE" "TUBA3C WILD-TYPE" 
      TCGA-91-6828       TCGA-91-6829       TCGA-91-6831       TCGA-91-6835 
  "TUBA3C MUTATED" "TUBA3C WILD-TYPE" "TUBA3C WILD-TYPE" "TUBA3C WILD-TYPE" 
      TCGA-91-6836 
"TUBA3C WILD-TYPE" 
[1] "hr=" "1.4"
D153V2, continuous
D153V3, binary
[1] "tbl2"
                  cls
clus               [,1] [,2]
  TUBA3C MUTATED      3    4
  TUBA3C WILD-TYPE   90   75
        clus
vv       TUBA3C MUTATED TUBA3C WILD-TYPE
  FEMALE              3               90
  MALE                4               75
D153V4, continuous
[1] "Remove cluster labels:" "TUBA3C MUTATED"        
clus
  TUBA3C MUTATED TUBA3C WILD-TYPE 
               1               11 
      TCGA-35-4123       TCGA-35-5375       TCGA-64-1677       TCGA-64-5778 
"TUBA3C WILD-TYPE" "TUBA3C WILD-TYPE" "TUBA3C WILD-TYPE" "TUBA3C WILD-TYPE" 
      TCGA-71-6725       TCGA-73-4659       TCGA-73-4662       TCGA-73-4666 
"TUBA3C WILD-TYPE" "TUBA3C WILD-TYPE" "TUBA3C WILD-TYPE" "TUBA3C WILD-TYPE" 
      TCGA-73-4668       TCGA-73-4676       TCGA-75-5122 
"TUBA3C WILD-TYPE" "TUBA3C WILD-TYPE" "TUBA3C WILD-TYPE" 
D153V5, multiclass
D153V6, multiclass
    clus
vv   TUBA3C MUTATED TUBA3C WILD-TYPE
  T1              3               38
  T2              3              105
  T3              1               13
  T4              0                8
D153V7, multiclass
       clus
vv      TUBA3C MUTATED TUBA3C WILD-TYPE
  N0                 7               88
  N1                 0               37
  N2+N3              0               35
D153V8, multiclass
    clus
vv   TUBA3C MUTATED TUBA3C WILD-TYPE
  M0              5              132
  M1              0                9
  MX              2               20
D153V9, multiclass
     clus
vv    TUBA3C MUTATED TUBA3C WILD-TYPE
  I                6               82
  II               1               32
  III              0               39
  IV               0                9
D153V10, binary
[1] "tbl2"
                  cls
clus               [,1] [,2]
  TUBA3C MUTATED      0    7
  TUBA3C WILD-TYPE   16  149
     clus
vv    TUBA3C MUTATED TUBA3C WILD-TYPE
  NO               0               16
  YES              7              149
D153V11, continuous
D153V12, continuous
D153V13, multiclass
                                             clus
vv                                            TUBA3C MUTATED TUBA3C WILD-TYPE
  CURRENT REFORMED SMOKER FOR < OR = 15 YEARS              5               57
  CURRENT REFORMED SMOKER FOR > 15 YEARS                   1               45
  CURRENT SMOKER                                           1               27
  LIFELONG NON-SMOKER                                      0               24
D153V14, continuous

Clustering(154) Variable = DACH1 MUTATION ANALYSIS
D154V1, survival
                 sevent
clus2              0  1
  DACH1 MUTATED    7  3
  DACH1 WILD-TYPE 92 47
  DACH1 MUTATED DACH1 WILD-TYPE 
             10             139 
  DACH1 MUTATED DACH1 WILD-TYPE 
              3              47 
$`DACH1 MUTATED`
TCGA-05-4250 TCGA-05-4382 TCGA-05-4420 TCGA-49-4494 TCGA-49-6743 TCGA-55-1596 
        3.98        19.92        29.95        35.54        12.13        45.17 
TCGA-64-1678 TCGA-64-5778 TCGA-67-3771 TCGA-91-6829 
       39.09        30.44         1.97        41.33 

$`DACH1 WILD-TYPE`
TCGA-05-4249 TCGA-05-4384 TCGA-05-4390 TCGA-05-4396 TCGA-05-4397 TCGA-05-4398 
       38.07        14.01        37.02         9.96        24.03        47.05 
TCGA-05-4402 TCGA-05-4405 TCGA-05-4415 TCGA-05-4417 TCGA-05-4418 TCGA-05-4424 
        8.02        20.05         2.96        14.93         8.98        30.02 
TCGA-05-4426 TCGA-05-4427 TCGA-05-4430 TCGA-05-4432 TCGA-05-4433 TCGA-05-4434 
       26.01        26.01        25.02        25.02        24.00        15.02 
TCGA-05-5420 TCGA-05-5423 TCGA-05-5425 TCGA-05-5429 TCGA-05-5715 TCGA-35-3615 
        1.02         4.96         2.96         0.99         2.04         0.46 
TCGA-35-4122 TCGA-35-4123 TCGA-35-5375 TCGA-38-4625 TCGA-38-4626 TCGA-38-4627 
        7.36         5.95         8.68        47.61        85.32        37.71 
TCGA-38-4628 TCGA-38-4629 TCGA-38-4630 TCGA-38-4631 TCGA-38-4632 TCGA-38-6178 
       49.02        28.37        35.28        11.64        44.61         5.19 
TCGA-44-2655 TCGA-44-2656 TCGA-44-2657 TCGA-44-2659 TCGA-44-2661 TCGA-44-2662 
       18.87        19.10        13.15        17.39         3.39        15.78 
TCGA-44-2665 TCGA-44-2666 TCGA-44-2668 TCGA-44-3396 TCGA-44-3398 TCGA-44-3918 
       13.15         3.19         8.09        10.22         8.32         6.44 
TCGA-44-3919 TCGA-44-4112 TCGA-44-5643 TCGA-44-5645 TCGA-44-6144 TCGA-44-6145 
        6.21         4.60         3.48         6.84         0.30         3.35 
TCGA-44-6146 TCGA-44-6147 TCGA-44-6148 TCGA-44-6774 TCGA-44-6775 TCGA-44-6776 
        9.93         7.76         3.12         5.42         2.70        63.72 
TCGA-44-6777 TCGA-44-6778 TCGA-44-6779 TCGA-49-4486 TCGA-49-4487 TCGA-49-4488 
       32.45        36.49        16.41        76.21        28.11        28.57 
TCGA-49-4490 TCGA-49-4501 TCGA-49-4505 TCGA-49-4506 TCGA-49-4507 TCGA-49-4510 
       12.66        46.72        14.07        32.84         8.81        29.46 
TCGA-49-4512 TCGA-49-4514 TCGA-49-6742 TCGA-49-6744 TCGA-49-6745 TCGA-50-5044 
       29.75        43.20        15.02        12.99         4.93        20.48 
TCGA-50-5045 TCGA-50-5049 TCGA-50-5051 TCGA-50-5055 TCGA-50-5066 TCGA-50-5068 
       71.47        48.82        14.96        25.81         9.76        49.28 
TCGA-50-5072 TCGA-50-5930 TCGA-50-5931 TCGA-50-5932 TCGA-50-5933 TCGA-50-5935 
        8.05         9.27         8.78        35.87        77.88        21.47 
TCGA-50-5936 TCGA-50-5939 TCGA-50-5941 TCGA-50-5942 TCGA-50-5944 TCGA-50-5946 
        8.45        15.12         9.37         4.44        12.26        11.47 
TCGA-50-6590 TCGA-50-6591 TCGA-50-6592 TCGA-50-6593 TCGA-50-6594 TCGA-50-6595 
       42.31         3.88        25.51        11.05        12.16         6.21 
TCGA-50-6597 TCGA-55-1592 TCGA-55-1594 TCGA-55-1595 TCGA-55-5899 TCGA-55-6543 
       33.37        23.05        38.73        48.62         2.86         0.07 
TCGA-55-6642 TCGA-55-6712 TCGA-64-1676 TCGA-64-1677 TCGA-64-1680 TCGA-64-5774 
       32.61         0.79        56.81        20.65        37.02        83.84 
TCGA-64-5775 TCGA-64-5779 TCGA-64-5781 TCGA-64-5815 TCGA-67-3770 TCGA-67-3772 
        0.10        16.67        39.52         7.33         0.99         0.59 
TCGA-67-3773 TCGA-67-3774 TCGA-67-6215 TCGA-67-6216 TCGA-67-6217 TCGA-71-6725 
        2.04         0.59         0.89         0.69        13.87         2.01 
TCGA-73-4658 TCGA-73-4659 TCGA-73-4662 TCGA-73-4666 TCGA-73-4668 TCGA-73-4670 
       52.57        23.38        29.95        20.28        15.35         0.46 
TCGA-73-4675 TCGA-73-4676 TCGA-73-4677 TCGA-91-6828 TCGA-91-6831 TCGA-91-6835 
        1.32         4.01         1.25         1.22         1.28         1.15 
TCGA-91-6836 
        0.36 

  DACH1 MUTATED DACH1 WILD-TYPE 
           1.97            0.07 
  DACH1 MUTATED DACH1 WILD-TYPE 
          45.17           85.32 
  DACH1 MUTATED DACH1 WILD-TYPE 
         30.195          13.150 
[1] "2.0 - 45.2 (30.2)" "0.1 - 85.3 (13.2)"
     TCGA-05-4249      TCGA-05-4250      TCGA-05-4382      TCGA-05-4384 
"DACH1 WILD-TYPE"   "DACH1 MUTATED"   "DACH1 MUTATED" "DACH1 WILD-TYPE" 
     TCGA-05-4390      TCGA-05-4396      TCGA-05-4397      TCGA-05-4398 
"DACH1 WILD-TYPE" "DACH1 WILD-TYPE" "DACH1 WILD-TYPE" "DACH1 WILD-TYPE" 
     TCGA-05-4402      TCGA-05-4405      TCGA-05-4415      TCGA-05-4417 
"DACH1 WILD-TYPE" "DACH1 WILD-TYPE" "DACH1 WILD-TYPE" "DACH1 WILD-TYPE" 
     TCGA-05-4418      TCGA-05-4420      TCGA-05-4424      TCGA-05-4426 
"DACH1 WILD-TYPE"   "DACH1 MUTATED" "DACH1 WILD-TYPE" "DACH1 WILD-TYPE" 
     TCGA-05-4427      TCGA-05-4430      TCGA-05-4432      TCGA-05-4433 
"DACH1 WILD-TYPE" "DACH1 WILD-TYPE" "DACH1 WILD-TYPE" "DACH1 WILD-TYPE" 
     TCGA-05-4434      TCGA-05-5420      TCGA-05-5423      TCGA-05-5425 
"DACH1 WILD-TYPE" "DACH1 WILD-TYPE" "DACH1 WILD-TYPE" "DACH1 WILD-TYPE" 
     TCGA-05-5429      TCGA-05-5715      TCGA-35-3615      TCGA-35-4122 
"DACH1 WILD-TYPE" "DACH1 WILD-TYPE" "DACH1 WILD-TYPE" "DACH1 WILD-TYPE" 
     TCGA-35-4123      TCGA-35-5375      TCGA-38-4625      TCGA-38-4626 
"DACH1 WILD-TYPE" "DACH1 WILD-TYPE" "DACH1 WILD-TYPE" "DACH1 WILD-TYPE" 
     TCGA-38-4627      TCGA-38-4628      TCGA-38-4629      TCGA-38-4630 
"DACH1 WILD-TYPE" "DACH1 WILD-TYPE" "DACH1 WILD-TYPE" "DACH1 WILD-TYPE" 
     TCGA-38-4631      TCGA-38-4632      TCGA-38-6178      TCGA-44-2655 
"DACH1 WILD-TYPE" "DACH1 WILD-TYPE" "DACH1 WILD-TYPE" "DACH1 WILD-TYPE" 
     TCGA-44-2656      TCGA-44-2657      TCGA-44-2659      TCGA-44-2661 
"DACH1 WILD-TYPE" "DACH1 WILD-TYPE" "DACH1 WILD-TYPE" "DACH1 WILD-TYPE" 
     TCGA-44-2662      TCGA-44-2665      TCGA-44-2666      TCGA-44-2668 
"DACH1 WILD-TYPE" "DACH1 WILD-TYPE" "DACH1 WILD-TYPE" "DACH1 WILD-TYPE" 
     TCGA-44-3396      TCGA-44-3398      TCGA-44-3918      TCGA-44-3919 
"DACH1 WILD-TYPE" "DACH1 WILD-TYPE" "DACH1 WILD-TYPE" "DACH1 WILD-TYPE" 
     TCGA-44-4112      TCGA-44-5643      TCGA-44-5645      TCGA-44-6144 
"DACH1 WILD-TYPE" "DACH1 WILD-TYPE" "DACH1 WILD-TYPE" "DACH1 WILD-TYPE" 
     TCGA-44-6145      TCGA-44-6146      TCGA-44-6147      TCGA-44-6148 
"DACH1 WILD-TYPE" "DACH1 WILD-TYPE" "DACH1 WILD-TYPE" "DACH1 WILD-TYPE" 
     TCGA-44-6774      TCGA-44-6775      TCGA-44-6776      TCGA-44-6777 
"DACH1 WILD-TYPE" "DACH1 WILD-TYPE" "DACH1 WILD-TYPE" "DACH1 WILD-TYPE" 
     TCGA-44-6778      TCGA-44-6779      TCGA-49-4486      TCGA-49-4487 
"DACH1 WILD-TYPE" "DACH1 WILD-TYPE" "DACH1 WILD-TYPE" "DACH1 WILD-TYPE" 
     TCGA-49-4488      TCGA-49-4490      TCGA-49-4494      TCGA-49-4501 
"DACH1 WILD-TYPE" "DACH1 WILD-TYPE"   "DACH1 MUTATED" "DACH1 WILD-TYPE" 
     TCGA-49-4505      TCGA-49-4506      TCGA-49-4507      TCGA-49-4510 
"DACH1 WILD-TYPE" "DACH1 WILD-TYPE" "DACH1 WILD-TYPE" "DACH1 WILD-TYPE" 
     TCGA-49-4512      TCGA-49-4514      TCGA-49-6742      TCGA-49-6743 
"DACH1 WILD-TYPE" "DACH1 WILD-TYPE" "DACH1 WILD-TYPE"   "DACH1 MUTATED" 
     TCGA-49-6744      TCGA-49-6745      TCGA-50-5044      TCGA-50-5045 
"DACH1 WILD-TYPE" "DACH1 WILD-TYPE" "DACH1 WILD-TYPE" "DACH1 WILD-TYPE" 
     TCGA-50-5049      TCGA-50-5051      TCGA-50-5055      TCGA-50-5066 
"DACH1 WILD-TYPE" "DACH1 WILD-TYPE" "DACH1 WILD-TYPE" "DACH1 WILD-TYPE" 
     TCGA-50-5068      TCGA-50-5072      TCGA-50-5930      TCGA-50-5931 
"DACH1 WILD-TYPE" "DACH1 WILD-TYPE" "DACH1 WILD-TYPE" "DACH1 WILD-TYPE" 
     TCGA-50-5932      TCGA-50-5933      TCGA-50-5935      TCGA-50-5936 
"DACH1 WILD-TYPE" "DACH1 WILD-TYPE" "DACH1 WILD-TYPE" "DACH1 WILD-TYPE" 
     TCGA-50-5939      TCGA-50-5941      TCGA-50-5942      TCGA-50-5944 
"DACH1 WILD-TYPE" "DACH1 WILD-TYPE" "DACH1 WILD-TYPE" "DACH1 WILD-TYPE" 
     TCGA-50-5946      TCGA-50-6590      TCGA-50-6591      TCGA-50-6592 
"DACH1 WILD-TYPE" "DACH1 WILD-TYPE" "DACH1 WILD-TYPE" "DACH1 WILD-TYPE" 
     TCGA-50-6593      TCGA-50-6594      TCGA-50-6595      TCGA-50-6597 
"DACH1 WILD-TYPE" "DACH1 WILD-TYPE" "DACH1 WILD-TYPE" "DACH1 WILD-TYPE" 
     TCGA-55-1592      TCGA-55-1594      TCGA-55-1595      TCGA-55-1596 
"DACH1 WILD-TYPE" "DACH1 WILD-TYPE" "DACH1 WILD-TYPE"   "DACH1 MUTATED" 
     TCGA-55-5899      TCGA-55-6543      TCGA-55-6642      TCGA-55-6712 
"DACH1 WILD-TYPE" "DACH1 WILD-TYPE" "DACH1 WILD-TYPE" "DACH1 WILD-TYPE" 
     TCGA-64-1676      TCGA-64-1677      TCGA-64-1678      TCGA-64-1680 
"DACH1 WILD-TYPE" "DACH1 WILD-TYPE"   "DACH1 MUTATED" "DACH1 WILD-TYPE" 
     TCGA-64-5774      TCGA-64-5775      TCGA-64-5778      TCGA-64-5779 
"DACH1 WILD-TYPE" "DACH1 WILD-TYPE"   "DACH1 MUTATED" "DACH1 WILD-TYPE" 
     TCGA-64-5781      TCGA-64-5815      TCGA-67-3770      TCGA-67-3771 
"DACH1 WILD-TYPE" "DACH1 WILD-TYPE" "DACH1 WILD-TYPE"   "DACH1 MUTATED" 
     TCGA-67-3772      TCGA-67-3773      TCGA-67-3774      TCGA-67-6215 
"DACH1 WILD-TYPE" "DACH1 WILD-TYPE" "DACH1 WILD-TYPE" "DACH1 WILD-TYPE" 
     TCGA-67-6216      TCGA-67-6217      TCGA-71-6725      TCGA-73-4658 
"DACH1 WILD-TYPE" "DACH1 WILD-TYPE" "DACH1 WILD-TYPE" "DACH1 WILD-TYPE" 
     TCGA-73-4659      TCGA-73-4662      TCGA-73-4666      TCGA-73-4668 
"DACH1 WILD-TYPE" "DACH1 WILD-TYPE" "DACH1 WILD-TYPE" "DACH1 WILD-TYPE" 
     TCGA-73-4670      TCGA-73-4675      TCGA-73-4676      TCGA-73-4677 
"DACH1 WILD-TYPE" "DACH1 WILD-TYPE" "DACH1 WILD-TYPE" "DACH1 WILD-TYPE" 
     TCGA-91-6828      TCGA-91-6829      TCGA-91-6831      TCGA-91-6835 
"DACH1 WILD-TYPE"   "DACH1 MUTATED" "DACH1 WILD-TYPE" "DACH1 WILD-TYPE" 
     TCGA-91-6836 
"DACH1 WILD-TYPE" 
     TCGA-05-4249      TCGA-05-4250      TCGA-05-4382      TCGA-05-4384 
"DACH1 WILD-TYPE"   "DACH1 MUTATED"   "DACH1 MUTATED" "DACH1 WILD-TYPE" 
     TCGA-05-4390      TCGA-05-4396      TCGA-05-4397      TCGA-05-4398 
"DACH1 WILD-TYPE" "DACH1 WILD-TYPE" "DACH1 WILD-TYPE" "DACH1 WILD-TYPE" 
     TCGA-05-4402      TCGA-05-4405      TCGA-05-4415      TCGA-05-4417 
"DACH1 WILD-TYPE" "DACH1 WILD-TYPE" "DACH1 WILD-TYPE" "DACH1 WILD-TYPE" 
     TCGA-05-4418      TCGA-05-4420      TCGA-05-4424      TCGA-05-4426 
"DACH1 WILD-TYPE"   "DACH1 MUTATED" "DACH1 WILD-TYPE" "DACH1 WILD-TYPE" 
     TCGA-05-4427      TCGA-05-4430      TCGA-05-4432      TCGA-05-4433 
"DACH1 WILD-TYPE" "DACH1 WILD-TYPE" "DACH1 WILD-TYPE" "DACH1 WILD-TYPE" 
     TCGA-05-4434      TCGA-05-5420      TCGA-05-5423      TCGA-05-5425 
"DACH1 WILD-TYPE" "DACH1 WILD-TYPE" "DACH1 WILD-TYPE" "DACH1 WILD-TYPE" 
     TCGA-05-5429      TCGA-05-5715      TCGA-35-3615      TCGA-35-4122 
"DACH1 WILD-TYPE" "DACH1 WILD-TYPE" "DACH1 WILD-TYPE" "DACH1 WILD-TYPE" 
     TCGA-35-4123      TCGA-35-5375      TCGA-38-4625      TCGA-38-4626 
"DACH1 WILD-TYPE" "DACH1 WILD-TYPE" "DACH1 WILD-TYPE" "DACH1 WILD-TYPE" 
     TCGA-38-4627      TCGA-38-4628      TCGA-38-4629      TCGA-38-4630 
"DACH1 WILD-TYPE" "DACH1 WILD-TYPE" "DACH1 WILD-TYPE" "DACH1 WILD-TYPE" 
     TCGA-38-4631      TCGA-38-4632      TCGA-38-6178      TCGA-44-2655 
"DACH1 WILD-TYPE" "DACH1 WILD-TYPE" "DACH1 WILD-TYPE" "DACH1 WILD-TYPE" 
     TCGA-44-2656      TCGA-44-2657      TCGA-44-2659      TCGA-44-2661 
"DACH1 WILD-TYPE" "DACH1 WILD-TYPE" "DACH1 WILD-TYPE" "DACH1 WILD-TYPE" 
     TCGA-44-2662      TCGA-44-2665      TCGA-44-2666      TCGA-44-2668 
"DACH1 WILD-TYPE" "DACH1 WILD-TYPE" "DACH1 WILD-TYPE" "DACH1 WILD-TYPE" 
     TCGA-44-3396      TCGA-44-3398      TCGA-44-3918      TCGA-44-3919 
"DACH1 WILD-TYPE" "DACH1 WILD-TYPE" "DACH1 WILD-TYPE" "DACH1 WILD-TYPE" 
     TCGA-44-4112      TCGA-44-5643      TCGA-44-5645      TCGA-44-6144 
"DACH1 WILD-TYPE" "DACH1 WILD-TYPE" "DACH1 WILD-TYPE" "DACH1 WILD-TYPE" 
     TCGA-44-6145      TCGA-44-6146      TCGA-44-6147      TCGA-44-6148 
"DACH1 WILD-TYPE" "DACH1 WILD-TYPE" "DACH1 WILD-TYPE" "DACH1 WILD-TYPE" 
     TCGA-44-6774      TCGA-44-6775      TCGA-44-6776      TCGA-44-6777 
"DACH1 WILD-TYPE" "DACH1 WILD-TYPE" "DACH1 WILD-TYPE" "DACH1 WILD-TYPE" 
     TCGA-44-6778      TCGA-44-6779      TCGA-49-4486      TCGA-49-4487 
"DACH1 WILD-TYPE" "DACH1 WILD-TYPE" "DACH1 WILD-TYPE" "DACH1 WILD-TYPE" 
     TCGA-49-4488      TCGA-49-4490      TCGA-49-4494      TCGA-49-4501 
"DACH1 WILD-TYPE" "DACH1 WILD-TYPE"   "DACH1 MUTATED" "DACH1 WILD-TYPE" 
     TCGA-49-4505      TCGA-49-4506      TCGA-49-4507      TCGA-49-4510 
"DACH1 WILD-TYPE" "DACH1 WILD-TYPE" "DACH1 WILD-TYPE" "DACH1 WILD-TYPE" 
     TCGA-49-4512      TCGA-49-4514      TCGA-49-6742      TCGA-49-6743 
"DACH1 WILD-TYPE" "DACH1 WILD-TYPE" "DACH1 WILD-TYPE"   "DACH1 MUTATED" 
     TCGA-49-6744      TCGA-49-6745      TCGA-50-5044      TCGA-50-5045 
"DACH1 WILD-TYPE" "DACH1 WILD-TYPE" "DACH1 WILD-TYPE" "DACH1 WILD-TYPE" 
     TCGA-50-5049      TCGA-50-5051      TCGA-50-5055      TCGA-50-5066 
"DACH1 WILD-TYPE" "DACH1 WILD-TYPE" "DACH1 WILD-TYPE" "DACH1 WILD-TYPE" 
     TCGA-50-5068      TCGA-50-5072      TCGA-50-5930      TCGA-50-5931 
"DACH1 WILD-TYPE" "DACH1 WILD-TYPE" "DACH1 WILD-TYPE" "DACH1 WILD-TYPE" 
     TCGA-50-5932      TCGA-50-5933      TCGA-50-5935      TCGA-50-5936 
"DACH1 WILD-TYPE" "DACH1 WILD-TYPE" "DACH1 WILD-TYPE" "DACH1 WILD-TYPE" 
     TCGA-50-5939      TCGA-50-5941      TCGA-50-5942      TCGA-50-5944 
"DACH1 WILD-TYPE" "DACH1 WILD-TYPE" "DACH1 WILD-TYPE" "DACH1 WILD-TYPE" 
     TCGA-50-5946      TCGA-50-6590      TCGA-50-6591      TCGA-50-6592 
"DACH1 WILD-TYPE" "DACH1 WILD-TYPE" "DACH1 WILD-TYPE" "DACH1 WILD-TYPE" 
     TCGA-50-6593      TCGA-50-6594      TCGA-50-6595      TCGA-50-6597 
"DACH1 WILD-TYPE" "DACH1 WILD-TYPE" "DACH1 WILD-TYPE" "DACH1 WILD-TYPE" 
     TCGA-55-1592      TCGA-55-1594      TCGA-55-1595      TCGA-55-1596 
"DACH1 WILD-TYPE" "DACH1 WILD-TYPE" "DACH1 WILD-TYPE"   "DACH1 MUTATED" 
     TCGA-55-5899      TCGA-55-6543      TCGA-55-6642      TCGA-55-6712 
"DACH1 WILD-TYPE" "DACH1 WILD-TYPE" "DACH1 WILD-TYPE" "DACH1 WILD-TYPE" 
     TCGA-64-1676      TCGA-64-1677      TCGA-64-1678      TCGA-64-1680 
"DACH1 WILD-TYPE" "DACH1 WILD-TYPE"   "DACH1 MUTATED" "DACH1 WILD-TYPE" 
     TCGA-64-5774      TCGA-64-5775      TCGA-64-5778      TCGA-64-5779 
"DACH1 WILD-TYPE" "DACH1 WILD-TYPE"   "DACH1 MUTATED" "DACH1 WILD-TYPE" 
     TCGA-64-5781      TCGA-64-5815      TCGA-67-3770      TCGA-67-3771 
"DACH1 WILD-TYPE" "DACH1 WILD-TYPE" "DACH1 WILD-TYPE"   "DACH1 MUTATED" 
     TCGA-67-3772      TCGA-67-3773      TCGA-67-3774      TCGA-67-6215 
"DACH1 WILD-TYPE" "DACH1 WILD-TYPE" "DACH1 WILD-TYPE" "DACH1 WILD-TYPE" 
     TCGA-67-6216      TCGA-67-6217      TCGA-71-6725      TCGA-73-4658 
"DACH1 WILD-TYPE" "DACH1 WILD-TYPE" "DACH1 WILD-TYPE" "DACH1 WILD-TYPE" 
     TCGA-73-4659      TCGA-73-4662      TCGA-73-4666      TCGA-73-4668 
"DACH1 WILD-TYPE" "DACH1 WILD-TYPE" "DACH1 WILD-TYPE" "DACH1 WILD-TYPE" 
     TCGA-73-4670      TCGA-73-4675      TCGA-73-4676      TCGA-73-4677 
"DACH1 WILD-TYPE" "DACH1 WILD-TYPE" "DACH1 WILD-TYPE" "DACH1 WILD-TYPE" 
     TCGA-91-6828      TCGA-91-6829      TCGA-91-6831      TCGA-91-6835 
"DACH1 WILD-TYPE"   "DACH1 MUTATED" "DACH1 WILD-TYPE" "DACH1 WILD-TYPE" 
     TCGA-91-6836 
"DACH1 WILD-TYPE" 
     TCGA-05-4249      TCGA-05-4250      TCGA-05-4382      TCGA-05-4384 
"DACH1 WILD-TYPE"   "DACH1 MUTATED"   "DACH1 MUTATED" "DACH1 WILD-TYPE" 
     TCGA-05-4390      TCGA-05-4396      TCGA-05-4397      TCGA-05-4398 
"DACH1 WILD-TYPE" "DACH1 WILD-TYPE" "DACH1 WILD-TYPE" "DACH1 WILD-TYPE" 
     TCGA-05-4402      TCGA-05-4405      TCGA-05-4415      TCGA-05-4417 
"DACH1 WILD-TYPE" "DACH1 WILD-TYPE" "DACH1 WILD-TYPE" "DACH1 WILD-TYPE" 
     TCGA-05-4418      TCGA-05-4420      TCGA-05-4424      TCGA-05-4426 
"DACH1 WILD-TYPE"   "DACH1 MUTATED" "DACH1 WILD-TYPE" "DACH1 WILD-TYPE" 
     TCGA-05-4427      TCGA-05-4430      TCGA-05-4432      TCGA-05-4433 
"DACH1 WILD-TYPE" "DACH1 WILD-TYPE" "DACH1 WILD-TYPE" "DACH1 WILD-TYPE" 
     TCGA-05-4434      TCGA-05-5420      TCGA-05-5423      TCGA-05-5425 
"DACH1 WILD-TYPE" "DACH1 WILD-TYPE" "DACH1 WILD-TYPE" "DACH1 WILD-TYPE" 
     TCGA-05-5429      TCGA-05-5715      TCGA-35-3615      TCGA-35-4122 
"DACH1 WILD-TYPE" "DACH1 WILD-TYPE" "DACH1 WILD-TYPE" "DACH1 WILD-TYPE" 
     TCGA-35-4123      TCGA-35-5375      TCGA-38-4625      TCGA-38-4626 
"DACH1 WILD-TYPE" "DACH1 WILD-TYPE" "DACH1 WILD-TYPE" "DACH1 WILD-TYPE" 
     TCGA-38-4627      TCGA-38-4628      TCGA-38-4629      TCGA-38-4630 
"DACH1 WILD-TYPE" "DACH1 WILD-TYPE" "DACH1 WILD-TYPE" "DACH1 WILD-TYPE" 
     TCGA-38-4631      TCGA-38-4632      TCGA-38-6178      TCGA-44-2655 
"DACH1 WILD-TYPE" "DACH1 WILD-TYPE" "DACH1 WILD-TYPE" "DACH1 WILD-TYPE" 
     TCGA-44-2656      TCGA-44-2657      TCGA-44-2659      TCGA-44-2661 
"DACH1 WILD-TYPE" "DACH1 WILD-TYPE" "DACH1 WILD-TYPE" "DACH1 WILD-TYPE" 
     TCGA-44-2662      TCGA-44-2665      TCGA-44-2666      TCGA-44-2668 
"DACH1 WILD-TYPE" "DACH1 WILD-TYPE" "DACH1 WILD-TYPE" "DACH1 WILD-TYPE" 
     TCGA-44-3396      TCGA-44-3398      TCGA-44-3918      TCGA-44-3919 
"DACH1 WILD-TYPE" "DACH1 WILD-TYPE" "DACH1 WILD-TYPE" "DACH1 WILD-TYPE" 
     TCGA-44-4112      TCGA-44-5643      TCGA-44-5645      TCGA-44-6144 
"DACH1 WILD-TYPE" "DACH1 WILD-TYPE" "DACH1 WILD-TYPE" "DACH1 WILD-TYPE" 
     TCGA-44-6145      TCGA-44-6146      TCGA-44-6147      TCGA-44-6148 
"DACH1 WILD-TYPE" "DACH1 WILD-TYPE" "DACH1 WILD-TYPE" "DACH1 WILD-TYPE" 
     TCGA-44-6774      TCGA-44-6775      TCGA-44-6776      TCGA-44-6777 
"DACH1 WILD-TYPE" "DACH1 WILD-TYPE" "DACH1 WILD-TYPE" "DACH1 WILD-TYPE" 
     TCGA-44-6778      TCGA-44-6779      TCGA-49-4486      TCGA-49-4487 
"DACH1 WILD-TYPE" "DACH1 WILD-TYPE" "DACH1 WILD-TYPE" "DACH1 WILD-TYPE" 
     TCGA-49-4488      TCGA-49-4490      TCGA-49-4494      TCGA-49-4501 
"DACH1 WILD-TYPE" "DACH1 WILD-TYPE"   "DACH1 MUTATED" "DACH1 WILD-TYPE" 
     TCGA-49-4505      TCGA-49-4506      TCGA-49-4507      TCGA-49-4510 
"DACH1 WILD-TYPE" "DACH1 WILD-TYPE" "DACH1 WILD-TYPE" "DACH1 WILD-TYPE" 
     TCGA-49-4512      TCGA-49-4514      TCGA-49-6742      TCGA-49-6743 
"DACH1 WILD-TYPE" "DACH1 WILD-TYPE" "DACH1 WILD-TYPE"   "DACH1 MUTATED" 
     TCGA-49-6744      TCGA-49-6745      TCGA-50-5044      TCGA-50-5045 
"DACH1 WILD-TYPE" "DACH1 WILD-TYPE" "DACH1 WILD-TYPE" "DACH1 WILD-TYPE" 
     TCGA-50-5049      TCGA-50-5051      TCGA-50-5055      TCGA-50-5066 
"DACH1 WILD-TYPE" "DACH1 WILD-TYPE" "DACH1 WILD-TYPE" "DACH1 WILD-TYPE" 
     TCGA-50-5068      TCGA-50-5072      TCGA-50-5930      TCGA-50-5931 
"DACH1 WILD-TYPE" "DACH1 WILD-TYPE" "DACH1 WILD-TYPE" "DACH1 WILD-TYPE" 
     TCGA-50-5932      TCGA-50-5933      TCGA-50-5935      TCGA-50-5936 
"DACH1 WILD-TYPE" "DACH1 WILD-TYPE" "DACH1 WILD-TYPE" "DACH1 WILD-TYPE" 
     TCGA-50-5939      TCGA-50-5941      TCGA-50-5942      TCGA-50-5944 
"DACH1 WILD-TYPE" "DACH1 WILD-TYPE" "DACH1 WILD-TYPE" "DACH1 WILD-TYPE" 
     TCGA-50-5946      TCGA-50-6590      TCGA-50-6591      TCGA-50-6592 
"DACH1 WILD-TYPE" "DACH1 WILD-TYPE" "DACH1 WILD-TYPE" "DACH1 WILD-TYPE" 
     TCGA-50-6593      TCGA-50-6594      TCGA-50-6595      TCGA-50-6597 
"DACH1 WILD-TYPE" "DACH1 WILD-TYPE" "DACH1 WILD-TYPE" "DACH1 WILD-TYPE" 
     TCGA-55-1592      TCGA-55-1594      TCGA-55-1595      TCGA-55-1596 
"DACH1 WILD-TYPE" "DACH1 WILD-TYPE" "DACH1 WILD-TYPE"   "DACH1 MUTATED" 
     TCGA-55-5899      TCGA-55-6543      TCGA-55-6642      TCGA-55-6712 
"DACH1 WILD-TYPE" "DACH1 WILD-TYPE" "DACH1 WILD-TYPE" "DACH1 WILD-TYPE" 
     TCGA-64-1676      TCGA-64-1677      TCGA-64-1678      TCGA-64-1680 
"DACH1 WILD-TYPE" "DACH1 WILD-TYPE"   "DACH1 MUTATED" "DACH1 WILD-TYPE" 
     TCGA-64-5774      TCGA-64-5775      TCGA-64-5778      TCGA-64-5779 
"DACH1 WILD-TYPE" "DACH1 WILD-TYPE"   "DACH1 MUTATED" "DACH1 WILD-TYPE" 
     TCGA-64-5781      TCGA-64-5815      TCGA-67-3770      TCGA-67-3771 
"DACH1 WILD-TYPE" "DACH1 WILD-TYPE" "DACH1 WILD-TYPE"   "DACH1 MUTATED" 
     TCGA-67-3772      TCGA-67-3773      TCGA-67-3774      TCGA-67-6215 
"DACH1 WILD-TYPE" "DACH1 WILD-TYPE" "DACH1 WILD-TYPE" "DACH1 WILD-TYPE" 
     TCGA-67-6216      TCGA-67-6217      TCGA-71-6725      TCGA-73-4658 
"DACH1 WILD-TYPE" "DACH1 WILD-TYPE" "DACH1 WILD-TYPE" "DACH1 WILD-TYPE" 
     TCGA-73-4659      TCGA-73-4662      TCGA-73-4666      TCGA-73-4668 
"DACH1 WILD-TYPE" "DACH1 WILD-TYPE" "DACH1 WILD-TYPE" "DACH1 WILD-TYPE" 
     TCGA-73-4670      TCGA-73-4675      TCGA-73-4676      TCGA-73-4677 
"DACH1 WILD-TYPE" "DACH1 WILD-TYPE" "DACH1 WILD-TYPE" "DACH1 WILD-TYPE" 
     TCGA-91-6828      TCGA-91-6829      TCGA-91-6831      TCGA-91-6835 
"DACH1 WILD-TYPE"   "DACH1 MUTATED" "DACH1 WILD-TYPE" "DACH1 WILD-TYPE" 
     TCGA-91-6836 
"DACH1 WILD-TYPE" 
[1] "hr=" "1.5"
D154V2, continuous
D154V3, binary
[1] "tbl2"
                 cls
clus              [,1] [,2]
  DACH1 MUTATED      4    7
  DACH1 WILD-TYPE   89   72
        clus
vv       DACH1 MUTATED DACH1 WILD-TYPE
  FEMALE             4              89
  MALE               7              72
D154V4, continuous
[1] "Remove cluster labels:" "DACH1 MUTATED"         
clus
  DACH1 MUTATED DACH1 WILD-TYPE 
              1              11 
     TCGA-35-4122      TCGA-35-4123      TCGA-35-5375      TCGA-64-1677 
"DACH1 WILD-TYPE" "DACH1 WILD-TYPE" "DACH1 WILD-TYPE" "DACH1 WILD-TYPE" 
     TCGA-71-6725      TCGA-73-4659      TCGA-73-4662      TCGA-73-4666 
"DACH1 WILD-TYPE" "DACH1 WILD-TYPE" "DACH1 WILD-TYPE" "DACH1 WILD-TYPE" 
     TCGA-73-4668      TCGA-73-4676      TCGA-75-5122 
"DACH1 WILD-TYPE" "DACH1 WILD-TYPE" "DACH1 WILD-TYPE" 
D154V5, multiclass
D154V6, multiclass
    clus
vv   DACH1 MUTATED DACH1 WILD-TYPE
  T1             2              39
  T2             7             101
  T3             2              12
  T4             0               8
D154V7, multiclass
       clus
vv      DACH1 MUTATED DACH1 WILD-TYPE
  N0                7              88
  N1                2              35
  N2+N3             2              33
D154V8, multiclass
    clus
vv   DACH1 MUTATED DACH1 WILD-TYPE
  M0             9             128
  M1             0               9
  MX             2              20
D154V9, multiclass
     clus
vv    DACH1 MUTATED DACH1 WILD-TYPE
  I               6              82
  II              2              31
  III             3              36
  IV              0               9
D154V10, binary
[1] "tbl2"
                 cls
clus              [,1] [,2]
  DACH1 MUTATED      0   11
  DACH1 WILD-TYPE   16  145
     clus
vv    DACH1 MUTATED DACH1 WILD-TYPE
  NO              0              16
  YES            11             145
D154V11, continuous
D154V12, continuous
D154V13, multiclass
                                             clus
vv                                            DACH1 MUTATED DACH1 WILD-TYPE
  CURRENT REFORMED SMOKER FOR < OR = 15 YEARS             7              55
  CURRENT REFORMED SMOKER FOR > 15 YEARS                  2              44
  CURRENT SMOKER                                          2              26
  LIFELONG NON-SMOKER                                     0              24
D154V14, continuous

Clustering(155) Variable = NHEDC1 MUTATION ANALYSIS
D155V1, survival
                  sevent
clus2               0  1
  NHEDC1 MUTATED    6  2
  NHEDC1 WILD-TYPE 93 48
  NHEDC1 MUTATED NHEDC1 WILD-TYPE 
               8              141 
  NHEDC1 MUTATED NHEDC1 WILD-TYPE 
               2               48 
$`NHEDC1 MUTATED`
TCGA-05-4390 TCGA-05-4396 TCGA-05-4420 TCGA-38-4626 TCGA-38-4632 TCGA-44-3918 
       37.02         9.96        29.95        85.32        44.61         6.44 
TCGA-49-6742 TCGA-64-5781 
       15.02        39.52 

$`NHEDC1 WILD-TYPE`
TCGA-05-4249 TCGA-05-4250 TCGA-05-4382 TCGA-05-4384 TCGA-05-4397 TCGA-05-4398 
       38.07         3.98        19.92        14.01        24.03        47.05 
TCGA-05-4402 TCGA-05-4405 TCGA-05-4415 TCGA-05-4417 TCGA-05-4418 TCGA-05-4424 
        8.02        20.05         2.96        14.93         8.98        30.02 
TCGA-05-4426 TCGA-05-4427 TCGA-05-4430 TCGA-05-4432 TCGA-05-4433 TCGA-05-4434 
       26.01        26.01        25.02        25.02        24.00        15.02 
TCGA-05-5420 TCGA-05-5423 TCGA-05-5425 TCGA-05-5429 TCGA-05-5715 TCGA-35-3615 
        1.02         4.96         2.96         0.99         2.04         0.46 
TCGA-35-4122 TCGA-35-4123 TCGA-35-5375 TCGA-38-4625 TCGA-38-4627 TCGA-38-4628 
        7.36         5.95         8.68        47.61        37.71        49.02 
TCGA-38-4629 TCGA-38-4630 TCGA-38-4631 TCGA-38-6178 TCGA-44-2655 TCGA-44-2656 
       28.37        35.28        11.64         5.19        18.87        19.10 
TCGA-44-2657 TCGA-44-2659 TCGA-44-2661 TCGA-44-2662 TCGA-44-2665 TCGA-44-2666 
       13.15        17.39         3.39        15.78        13.15         3.19 
TCGA-44-2668 TCGA-44-3396 TCGA-44-3398 TCGA-44-3919 TCGA-44-4112 TCGA-44-5643 
        8.09        10.22         8.32         6.21         4.60         3.48 
TCGA-44-5645 TCGA-44-6144 TCGA-44-6145 TCGA-44-6146 TCGA-44-6147 TCGA-44-6148 
        6.84         0.30         3.35         9.93         7.76         3.12 
TCGA-44-6774 TCGA-44-6775 TCGA-44-6776 TCGA-44-6777 TCGA-44-6778 TCGA-44-6779 
        5.42         2.70        63.72        32.45        36.49        16.41 
TCGA-49-4486 TCGA-49-4487 TCGA-49-4488 TCGA-49-4490 TCGA-49-4494 TCGA-49-4501 
       76.21        28.11        28.57        12.66        35.54        46.72 
TCGA-49-4505 TCGA-49-4506 TCGA-49-4507 TCGA-49-4510 TCGA-49-4512 TCGA-49-4514 
       14.07        32.84         8.81        29.46        29.75        43.20 
TCGA-49-6743 TCGA-49-6744 TCGA-49-6745 TCGA-50-5044 TCGA-50-5045 TCGA-50-5049 
       12.13        12.99         4.93        20.48        71.47        48.82 
TCGA-50-5051 TCGA-50-5055 TCGA-50-5066 TCGA-50-5068 TCGA-50-5072 TCGA-50-5930 
       14.96        25.81         9.76        49.28         8.05         9.27 
TCGA-50-5931 TCGA-50-5932 TCGA-50-5933 TCGA-50-5935 TCGA-50-5936 TCGA-50-5939 
        8.78        35.87        77.88        21.47         8.45        15.12 
TCGA-50-5941 TCGA-50-5942 TCGA-50-5944 TCGA-50-5946 TCGA-50-6590 TCGA-50-6591 
        9.37         4.44        12.26        11.47        42.31         3.88 
TCGA-50-6592 TCGA-50-6593 TCGA-50-6594 TCGA-50-6595 TCGA-50-6597 TCGA-55-1592 
       25.51        11.05        12.16         6.21        33.37        23.05 
TCGA-55-1594 TCGA-55-1595 TCGA-55-1596 TCGA-55-5899 TCGA-55-6543 TCGA-55-6642 
       38.73        48.62        45.17         2.86         0.07        32.61 
TCGA-55-6712 TCGA-64-1676 TCGA-64-1677 TCGA-64-1678 TCGA-64-1680 TCGA-64-5774 
        0.79        56.81        20.65        39.09        37.02        83.84 
TCGA-64-5775 TCGA-64-5778 TCGA-64-5779 TCGA-64-5815 TCGA-67-3770 TCGA-67-3771 
        0.10        30.44        16.67         7.33         0.99         1.97 
TCGA-67-3772 TCGA-67-3773 TCGA-67-3774 TCGA-67-6215 TCGA-67-6216 TCGA-67-6217 
        0.59         2.04         0.59         0.89         0.69        13.87 
TCGA-71-6725 TCGA-73-4658 TCGA-73-4659 TCGA-73-4662 TCGA-73-4666 TCGA-73-4668 
        2.01        52.57        23.38        29.95        20.28        15.35 
TCGA-73-4670 TCGA-73-4675 TCGA-73-4676 TCGA-73-4677 TCGA-91-6828 TCGA-91-6829 
        0.46         1.32         4.01         1.25         1.22        41.33 
TCGA-91-6831 TCGA-91-6835 TCGA-91-6836 
        1.28         1.15         0.36 

  NHEDC1 MUTATED NHEDC1 WILD-TYPE 
            6.44             0.07 
  NHEDC1 MUTATED NHEDC1 WILD-TYPE 
           85.32            83.84 
  NHEDC1 MUTATED NHEDC1 WILD-TYPE 
          33.485           13.150 
[1] "6.4 - 85.3 (33.5)" "0.1 - 83.8 (13.2)"
      TCGA-05-4249       TCGA-05-4250       TCGA-05-4382       TCGA-05-4384 
"NHEDC1 WILD-TYPE" "NHEDC1 WILD-TYPE" "NHEDC1 WILD-TYPE" "NHEDC1 WILD-TYPE" 
      TCGA-05-4390       TCGA-05-4396       TCGA-05-4397       TCGA-05-4398 
  "NHEDC1 MUTATED"   "NHEDC1 MUTATED" "NHEDC1 WILD-TYPE" "NHEDC1 WILD-TYPE" 
      TCGA-05-4402       TCGA-05-4405       TCGA-05-4415       TCGA-05-4417 
"NHEDC1 WILD-TYPE" "NHEDC1 WILD-TYPE" "NHEDC1 WILD-TYPE" "NHEDC1 WILD-TYPE" 
      TCGA-05-4418       TCGA-05-4420       TCGA-05-4424       TCGA-05-4426 
"NHEDC1 WILD-TYPE"   "NHEDC1 MUTATED" "NHEDC1 WILD-TYPE" "NHEDC1 WILD-TYPE" 
      TCGA-05-4427       TCGA-05-4430       TCGA-05-4432       TCGA-05-4433 
"NHEDC1 WILD-TYPE" "NHEDC1 WILD-TYPE" "NHEDC1 WILD-TYPE" "NHEDC1 WILD-TYPE" 
      TCGA-05-4434       TCGA-05-5420       TCGA-05-5423       TCGA-05-5425 
"NHEDC1 WILD-TYPE" "NHEDC1 WILD-TYPE" "NHEDC1 WILD-TYPE" "NHEDC1 WILD-TYPE" 
      TCGA-05-5429       TCGA-05-5715       TCGA-35-3615       TCGA-35-4122 
"NHEDC1 WILD-TYPE" "NHEDC1 WILD-TYPE" "NHEDC1 WILD-TYPE" "NHEDC1 WILD-TYPE" 
      TCGA-35-4123       TCGA-35-5375       TCGA-38-4625       TCGA-38-4626 
"NHEDC1 WILD-TYPE" "NHEDC1 WILD-TYPE" "NHEDC1 WILD-TYPE"   "NHEDC1 MUTATED" 
      TCGA-38-4627       TCGA-38-4628       TCGA-38-4629       TCGA-38-4630 
"NHEDC1 WILD-TYPE" "NHEDC1 WILD-TYPE" "NHEDC1 WILD-TYPE" "NHEDC1 WILD-TYPE" 
      TCGA-38-4631       TCGA-38-4632       TCGA-38-6178       TCGA-44-2655 
"NHEDC1 WILD-TYPE"   "NHEDC1 MUTATED" "NHEDC1 WILD-TYPE" "NHEDC1 WILD-TYPE" 
      TCGA-44-2656       TCGA-44-2657       TCGA-44-2659       TCGA-44-2661 
"NHEDC1 WILD-TYPE" "NHEDC1 WILD-TYPE" "NHEDC1 WILD-TYPE" "NHEDC1 WILD-TYPE" 
      TCGA-44-2662       TCGA-44-2665       TCGA-44-2666       TCGA-44-2668 
"NHEDC1 WILD-TYPE" "NHEDC1 WILD-TYPE" "NHEDC1 WILD-TYPE" "NHEDC1 WILD-TYPE" 
      TCGA-44-3396       TCGA-44-3398       TCGA-44-3918       TCGA-44-3919 
"NHEDC1 WILD-TYPE" "NHEDC1 WILD-TYPE"   "NHEDC1 MUTATED" "NHEDC1 WILD-TYPE" 
      TCGA-44-4112       TCGA-44-5643       TCGA-44-5645       TCGA-44-6144 
"NHEDC1 WILD-TYPE" "NHEDC1 WILD-TYPE" "NHEDC1 WILD-TYPE" "NHEDC1 WILD-TYPE" 
      TCGA-44-6145       TCGA-44-6146       TCGA-44-6147       TCGA-44-6148 
"NHEDC1 WILD-TYPE" "NHEDC1 WILD-TYPE" "NHEDC1 WILD-TYPE" "NHEDC1 WILD-TYPE" 
      TCGA-44-6774       TCGA-44-6775       TCGA-44-6776       TCGA-44-6777 
"NHEDC1 WILD-TYPE" "NHEDC1 WILD-TYPE" "NHEDC1 WILD-TYPE" "NHEDC1 WILD-TYPE" 
      TCGA-44-6778       TCGA-44-6779       TCGA-49-4486       TCGA-49-4487 
"NHEDC1 WILD-TYPE" "NHEDC1 WILD-TYPE" "NHEDC1 WILD-TYPE" "NHEDC1 WILD-TYPE" 
      TCGA-49-4488       TCGA-49-4490       TCGA-49-4494       TCGA-49-4501 
"NHEDC1 WILD-TYPE" "NHEDC1 WILD-TYPE" "NHEDC1 WILD-TYPE" "NHEDC1 WILD-TYPE" 
      TCGA-49-4505       TCGA-49-4506       TCGA-49-4507       TCGA-49-4510 
"NHEDC1 WILD-TYPE" "NHEDC1 WILD-TYPE" "NHEDC1 WILD-TYPE" "NHEDC1 WILD-TYPE" 
      TCGA-49-4512       TCGA-49-4514       TCGA-49-6742       TCGA-49-6743 
"NHEDC1 WILD-TYPE" "NHEDC1 WILD-TYPE"   "NHEDC1 MUTATED" "NHEDC1 WILD-TYPE" 
      TCGA-49-6744       TCGA-49-6745       TCGA-50-5044       TCGA-50-5045 
"NHEDC1 WILD-TYPE" "NHEDC1 WILD-TYPE" "NHEDC1 WILD-TYPE" "NHEDC1 WILD-TYPE" 
      TCGA-50-5049       TCGA-50-5051       TCGA-50-5055       TCGA-50-5066 
"NHEDC1 WILD-TYPE" "NHEDC1 WILD-TYPE" "NHEDC1 WILD-TYPE" "NHEDC1 WILD-TYPE" 
      TCGA-50-5068       TCGA-50-5072       TCGA-50-5930       TCGA-50-5931 
"NHEDC1 WILD-TYPE" "NHEDC1 WILD-TYPE" "NHEDC1 WILD-TYPE" "NHEDC1 WILD-TYPE" 
      TCGA-50-5932       TCGA-50-5933       TCGA-50-5935       TCGA-50-5936 
"NHEDC1 WILD-TYPE" "NHEDC1 WILD-TYPE" "NHEDC1 WILD-TYPE" "NHEDC1 WILD-TYPE" 
      TCGA-50-5939       TCGA-50-5941       TCGA-50-5942       TCGA-50-5944 
"NHEDC1 WILD-TYPE" "NHEDC1 WILD-TYPE" "NHEDC1 WILD-TYPE" "NHEDC1 WILD-TYPE" 
      TCGA-50-5946       TCGA-50-6590       TCGA-50-6591       TCGA-50-6592 
"NHEDC1 WILD-TYPE" "NHEDC1 WILD-TYPE" "NHEDC1 WILD-TYPE" "NHEDC1 WILD-TYPE" 
      TCGA-50-6593       TCGA-50-6594       TCGA-50-6595       TCGA-50-6597 
"NHEDC1 WILD-TYPE" "NHEDC1 WILD-TYPE" "NHEDC1 WILD-TYPE" "NHEDC1 WILD-TYPE" 
      TCGA-55-1592       TCGA-55-1594       TCGA-55-1595       TCGA-55-1596 
"NHEDC1 WILD-TYPE" "NHEDC1 WILD-TYPE" "NHEDC1 WILD-TYPE" "NHEDC1 WILD-TYPE" 
      TCGA-55-5899       TCGA-55-6543       TCGA-55-6642       TCGA-55-6712 
"NHEDC1 WILD-TYPE" "NHEDC1 WILD-TYPE" "NHEDC1 WILD-TYPE" "NHEDC1 WILD-TYPE" 
      TCGA-64-1676       TCGA-64-1677       TCGA-64-1678       TCGA-64-1680 
"NHEDC1 WILD-TYPE" "NHEDC1 WILD-TYPE" "NHEDC1 WILD-TYPE" "NHEDC1 WILD-TYPE" 
      TCGA-64-5774       TCGA-64-5775       TCGA-64-5778       TCGA-64-5779 
"NHEDC1 WILD-TYPE" "NHEDC1 WILD-TYPE" "NHEDC1 WILD-TYPE" "NHEDC1 WILD-TYPE" 
      TCGA-64-5781       TCGA-64-5815       TCGA-67-3770       TCGA-67-3771 
  "NHEDC1 MUTATED" "NHEDC1 WILD-TYPE" "NHEDC1 WILD-TYPE" "NHEDC1 WILD-TYPE" 
      TCGA-67-3772       TCGA-67-3773       TCGA-67-3774       TCGA-67-6215 
"NHEDC1 WILD-TYPE" "NHEDC1 WILD-TYPE" "NHEDC1 WILD-TYPE" "NHEDC1 WILD-TYPE" 
      TCGA-67-6216       TCGA-67-6217       TCGA-71-6725       TCGA-73-4658 
"NHEDC1 WILD-TYPE" "NHEDC1 WILD-TYPE" "NHEDC1 WILD-TYPE" "NHEDC1 WILD-TYPE" 
      TCGA-73-4659       TCGA-73-4662       TCGA-73-4666       TCGA-73-4668 
"NHEDC1 WILD-TYPE" "NHEDC1 WILD-TYPE" "NHEDC1 WILD-TYPE" "NHEDC1 WILD-TYPE" 
      TCGA-73-4670       TCGA-73-4675       TCGA-73-4676       TCGA-73-4677 
"NHEDC1 WILD-TYPE" "NHEDC1 WILD-TYPE" "NHEDC1 WILD-TYPE" "NHEDC1 WILD-TYPE" 
      TCGA-91-6828       TCGA-91-6829       TCGA-91-6831       TCGA-91-6835 
"NHEDC1 WILD-TYPE" "NHEDC1 WILD-TYPE" "NHEDC1 WILD-TYPE" "NHEDC1 WILD-TYPE" 
      TCGA-91-6836 
"NHEDC1 WILD-TYPE" 
      TCGA-05-4249       TCGA-05-4250       TCGA-05-4382       TCGA-05-4384 
"NHEDC1 WILD-TYPE" "NHEDC1 WILD-TYPE" "NHEDC1 WILD-TYPE" "NHEDC1 WILD-TYPE" 
      TCGA-05-4390       TCGA-05-4396       TCGA-05-4397       TCGA-05-4398 
  "NHEDC1 MUTATED"   "NHEDC1 MUTATED" "NHEDC1 WILD-TYPE" "NHEDC1 WILD-TYPE" 
      TCGA-05-4402       TCGA-05-4405       TCGA-05-4415       TCGA-05-4417 
"NHEDC1 WILD-TYPE" "NHEDC1 WILD-TYPE" "NHEDC1 WILD-TYPE" "NHEDC1 WILD-TYPE" 
      TCGA-05-4418       TCGA-05-4420       TCGA-05-4424       TCGA-05-4426 
"NHEDC1 WILD-TYPE"   "NHEDC1 MUTATED" "NHEDC1 WILD-TYPE" "NHEDC1 WILD-TYPE" 
      TCGA-05-4427       TCGA-05-4430       TCGA-05-4432       TCGA-05-4433 
"NHEDC1 WILD-TYPE" "NHEDC1 WILD-TYPE" "NHEDC1 WILD-TYPE" "NHEDC1 WILD-TYPE" 
      TCGA-05-4434       TCGA-05-5420       TCGA-05-5423       TCGA-05-5425 
"NHEDC1 WILD-TYPE" "NHEDC1 WILD-TYPE" "NHEDC1 WILD-TYPE" "NHEDC1 WILD-TYPE" 
      TCGA-05-5429       TCGA-05-5715       TCGA-35-3615       TCGA-35-4122 
"NHEDC1 WILD-TYPE" "NHEDC1 WILD-TYPE" "NHEDC1 WILD-TYPE" "NHEDC1 WILD-TYPE" 
      TCGA-35-4123       TCGA-35-5375       TCGA-38-4625       TCGA-38-4626 
"NHEDC1 WILD-TYPE" "NHEDC1 WILD-TYPE" "NHEDC1 WILD-TYPE"   "NHEDC1 MUTATED" 
      TCGA-38-4627       TCGA-38-4628       TCGA-38-4629       TCGA-38-4630 
"NHEDC1 WILD-TYPE" "NHEDC1 WILD-TYPE" "NHEDC1 WILD-TYPE" "NHEDC1 WILD-TYPE" 
      TCGA-38-4631       TCGA-38-4632       TCGA-38-6178       TCGA-44-2655 
"NHEDC1 WILD-TYPE"   "NHEDC1 MUTATED" "NHEDC1 WILD-TYPE" "NHEDC1 WILD-TYPE" 
      TCGA-44-2656       TCGA-44-2657       TCGA-44-2659       TCGA-44-2661 
"NHEDC1 WILD-TYPE" "NHEDC1 WILD-TYPE" "NHEDC1 WILD-TYPE" "NHEDC1 WILD-TYPE" 
      TCGA-44-2662       TCGA-44-2665       TCGA-44-2666       TCGA-44-2668 
"NHEDC1 WILD-TYPE" "NHEDC1 WILD-TYPE" "NHEDC1 WILD-TYPE" "NHEDC1 WILD-TYPE" 
      TCGA-44-3396       TCGA-44-3398       TCGA-44-3918       TCGA-44-3919 
"NHEDC1 WILD-TYPE" "NHEDC1 WILD-TYPE"   "NHEDC1 MUTATED" "NHEDC1 WILD-TYPE" 
      TCGA-44-4112       TCGA-44-5643       TCGA-44-5645       TCGA-44-6144 
"NHEDC1 WILD-TYPE" "NHEDC1 WILD-TYPE" "NHEDC1 WILD-TYPE" "NHEDC1 WILD-TYPE" 
      TCGA-44-6145       TCGA-44-6146       TCGA-44-6147       TCGA-44-6148 
"NHEDC1 WILD-TYPE" "NHEDC1 WILD-TYPE" "NHEDC1 WILD-TYPE" "NHEDC1 WILD-TYPE" 
      TCGA-44-6774       TCGA-44-6775       TCGA-44-6776       TCGA-44-6777 
"NHEDC1 WILD-TYPE" "NHEDC1 WILD-TYPE" "NHEDC1 WILD-TYPE" "NHEDC1 WILD-TYPE" 
      TCGA-44-6778       TCGA-44-6779       TCGA-49-4486       TCGA-49-4487 
"NHEDC1 WILD-TYPE" "NHEDC1 WILD-TYPE" "NHEDC1 WILD-TYPE" "NHEDC1 WILD-TYPE" 
      TCGA-49-4488       TCGA-49-4490       TCGA-49-4494       TCGA-49-4501 
"NHEDC1 WILD-TYPE" "NHEDC1 WILD-TYPE" "NHEDC1 WILD-TYPE" "NHEDC1 WILD-TYPE" 
      TCGA-49-4505       TCGA-49-4506       TCGA-49-4507       TCGA-49-4510 
"NHEDC1 WILD-TYPE" "NHEDC1 WILD-TYPE" "NHEDC1 WILD-TYPE" "NHEDC1 WILD-TYPE" 
      TCGA-49-4512       TCGA-49-4514       TCGA-49-6742       TCGA-49-6743 
"NHEDC1 WILD-TYPE" "NHEDC1 WILD-TYPE"   "NHEDC1 MUTATED" "NHEDC1 WILD-TYPE" 
      TCGA-49-6744       TCGA-49-6745       TCGA-50-5044       TCGA-50-5045 
"NHEDC1 WILD-TYPE" "NHEDC1 WILD-TYPE" "NHEDC1 WILD-TYPE" "NHEDC1 WILD-TYPE" 
      TCGA-50-5049       TCGA-50-5051       TCGA-50-5055       TCGA-50-5066 
"NHEDC1 WILD-TYPE" "NHEDC1 WILD-TYPE" "NHEDC1 WILD-TYPE" "NHEDC1 WILD-TYPE" 
      TCGA-50-5068       TCGA-50-5072       TCGA-50-5930       TCGA-50-5931 
"NHEDC1 WILD-TYPE" "NHEDC1 WILD-TYPE" "NHEDC1 WILD-TYPE" "NHEDC1 WILD-TYPE" 
      TCGA-50-5932       TCGA-50-5933       TCGA-50-5935       TCGA-50-5936 
"NHEDC1 WILD-TYPE" "NHEDC1 WILD-TYPE" "NHEDC1 WILD-TYPE" "NHEDC1 WILD-TYPE" 
      TCGA-50-5939       TCGA-50-5941       TCGA-50-5942       TCGA-50-5944 
"NHEDC1 WILD-TYPE" "NHEDC1 WILD-TYPE" "NHEDC1 WILD-TYPE" "NHEDC1 WILD-TYPE" 
      TCGA-50-5946       TCGA-50-6590       TCGA-50-6591       TCGA-50-6592 
"NHEDC1 WILD-TYPE" "NHEDC1 WILD-TYPE" "NHEDC1 WILD-TYPE" "NHEDC1 WILD-TYPE" 
      TCGA-50-6593       TCGA-50-6594       TCGA-50-6595       TCGA-50-6597 
"NHEDC1 WILD-TYPE" "NHEDC1 WILD-TYPE" "NHEDC1 WILD-TYPE" "NHEDC1 WILD-TYPE" 
      TCGA-55-1592       TCGA-55-1594       TCGA-55-1595       TCGA-55-1596 
"NHEDC1 WILD-TYPE" "NHEDC1 WILD-TYPE" "NHEDC1 WILD-TYPE" "NHEDC1 WILD-TYPE" 
      TCGA-55-5899       TCGA-55-6543       TCGA-55-6642       TCGA-55-6712 
"NHEDC1 WILD-TYPE" "NHEDC1 WILD-TYPE" "NHEDC1 WILD-TYPE" "NHEDC1 WILD-TYPE" 
      TCGA-64-1676       TCGA-64-1677       TCGA-64-1678       TCGA-64-1680 
"NHEDC1 WILD-TYPE" "NHEDC1 WILD-TYPE" "NHEDC1 WILD-TYPE" "NHEDC1 WILD-TYPE" 
      TCGA-64-5774       TCGA-64-5775       TCGA-64-5778       TCGA-64-5779 
"NHEDC1 WILD-TYPE" "NHEDC1 WILD-TYPE" "NHEDC1 WILD-TYPE" "NHEDC1 WILD-TYPE" 
      TCGA-64-5781       TCGA-64-5815       TCGA-67-3770       TCGA-67-3771 
  "NHEDC1 MUTATED" "NHEDC1 WILD-TYPE" "NHEDC1 WILD-TYPE" "NHEDC1 WILD-TYPE" 
      TCGA-67-3772       TCGA-67-3773       TCGA-67-3774       TCGA-67-6215 
"NHEDC1 WILD-TYPE" "NHEDC1 WILD-TYPE" "NHEDC1 WILD-TYPE" "NHEDC1 WILD-TYPE" 
      TCGA-67-6216       TCGA-67-6217       TCGA-71-6725       TCGA-73-4658 
"NHEDC1 WILD-TYPE" "NHEDC1 WILD-TYPE" "NHEDC1 WILD-TYPE" "NHEDC1 WILD-TYPE" 
      TCGA-73-4659       TCGA-73-4662       TCGA-73-4666       TCGA-73-4668 
"NHEDC1 WILD-TYPE" "NHEDC1 WILD-TYPE" "NHEDC1 WILD-TYPE" "NHEDC1 WILD-TYPE" 
      TCGA-73-4670       TCGA-73-4675       TCGA-73-4676       TCGA-73-4677 
"NHEDC1 WILD-TYPE" "NHEDC1 WILD-TYPE" "NHEDC1 WILD-TYPE" "NHEDC1 WILD-TYPE" 
      TCGA-91-6828       TCGA-91-6829       TCGA-91-6831       TCGA-91-6835 
"NHEDC1 WILD-TYPE" "NHEDC1 WILD-TYPE" "NHEDC1 WILD-TYPE" "NHEDC1 WILD-TYPE" 
      TCGA-91-6836 
"NHEDC1 WILD-TYPE" 
      TCGA-05-4249       TCGA-05-4250       TCGA-05-4382       TCGA-05-4384 
"NHEDC1 WILD-TYPE" "NHEDC1 WILD-TYPE" "NHEDC1 WILD-TYPE" "NHEDC1 WILD-TYPE" 
      TCGA-05-4390       TCGA-05-4396       TCGA-05-4397       TCGA-05-4398 
  "NHEDC1 MUTATED"   "NHEDC1 MUTATED" "NHEDC1 WILD-TYPE" "NHEDC1 WILD-TYPE" 
      TCGA-05-4402       TCGA-05-4405       TCGA-05-4415       TCGA-05-4417 
"NHEDC1 WILD-TYPE" "NHEDC1 WILD-TYPE" "NHEDC1 WILD-TYPE" "NHEDC1 WILD-TYPE" 
      TCGA-05-4418       TCGA-05-4420       TCGA-05-4424       TCGA-05-4426 
"NHEDC1 WILD-TYPE"   "NHEDC1 MUTATED" "NHEDC1 WILD-TYPE" "NHEDC1 WILD-TYPE" 
      TCGA-05-4427       TCGA-05-4430       TCGA-05-4432       TCGA-05-4433 
"NHEDC1 WILD-TYPE" "NHEDC1 WILD-TYPE" "NHEDC1 WILD-TYPE" "NHEDC1 WILD-TYPE" 
      TCGA-05-4434       TCGA-05-5420       TCGA-05-5423       TCGA-05-5425 
"NHEDC1 WILD-TYPE" "NHEDC1 WILD-TYPE" "NHEDC1 WILD-TYPE" "NHEDC1 WILD-TYPE" 
      TCGA-05-5429       TCGA-05-5715       TCGA-35-3615       TCGA-35-4122 
"NHEDC1 WILD-TYPE" "NHEDC1 WILD-TYPE" "NHEDC1 WILD-TYPE" "NHEDC1 WILD-TYPE" 
      TCGA-35-4123       TCGA-35-5375       TCGA-38-4625       TCGA-38-4626 
"NHEDC1 WILD-TYPE" "NHEDC1 WILD-TYPE" "NHEDC1 WILD-TYPE"   "NHEDC1 MUTATED" 
      TCGA-38-4627       TCGA-38-4628       TCGA-38-4629       TCGA-38-4630 
"NHEDC1 WILD-TYPE" "NHEDC1 WILD-TYPE" "NHEDC1 WILD-TYPE" "NHEDC1 WILD-TYPE" 
      TCGA-38-4631       TCGA-38-4632       TCGA-38-6178       TCGA-44-2655 
"NHEDC1 WILD-TYPE"   "NHEDC1 MUTATED" "NHEDC1 WILD-TYPE" "NHEDC1 WILD-TYPE" 
      TCGA-44-2656       TCGA-44-2657       TCGA-44-2659       TCGA-44-2661 
"NHEDC1 WILD-TYPE" "NHEDC1 WILD-TYPE" "NHEDC1 WILD-TYPE" "NHEDC1 WILD-TYPE" 
      TCGA-44-2662       TCGA-44-2665       TCGA-44-2666       TCGA-44-2668 
"NHEDC1 WILD-TYPE" "NHEDC1 WILD-TYPE" "NHEDC1 WILD-TYPE" "NHEDC1 WILD-TYPE" 
      TCGA-44-3396       TCGA-44-3398       TCGA-44-3918       TCGA-44-3919 
"NHEDC1 WILD-TYPE" "NHEDC1 WILD-TYPE"   "NHEDC1 MUTATED" "NHEDC1 WILD-TYPE" 
      TCGA-44-4112       TCGA-44-5643       TCGA-44-5645       TCGA-44-6144 
"NHEDC1 WILD-TYPE" "NHEDC1 WILD-TYPE" "NHEDC1 WILD-TYPE" "NHEDC1 WILD-TYPE" 
      TCGA-44-6145       TCGA-44-6146       TCGA-44-6147       TCGA-44-6148 
"NHEDC1 WILD-TYPE" "NHEDC1 WILD-TYPE" "NHEDC1 WILD-TYPE" "NHEDC1 WILD-TYPE" 
      TCGA-44-6774       TCGA-44-6775       TCGA-44-6776       TCGA-44-6777 
"NHEDC1 WILD-TYPE" "NHEDC1 WILD-TYPE" "NHEDC1 WILD-TYPE" "NHEDC1 WILD-TYPE" 
      TCGA-44-6778       TCGA-44-6779       TCGA-49-4486       TCGA-49-4487 
"NHEDC1 WILD-TYPE" "NHEDC1 WILD-TYPE" "NHEDC1 WILD-TYPE" "NHEDC1 WILD-TYPE" 
      TCGA-49-4488       TCGA-49-4490       TCGA-49-4494       TCGA-49-4501 
"NHEDC1 WILD-TYPE" "NHEDC1 WILD-TYPE" "NHEDC1 WILD-TYPE" "NHEDC1 WILD-TYPE" 
      TCGA-49-4505       TCGA-49-4506       TCGA-49-4507       TCGA-49-4510 
"NHEDC1 WILD-TYPE" "NHEDC1 WILD-TYPE" "NHEDC1 WILD-TYPE" "NHEDC1 WILD-TYPE" 
      TCGA-49-4512       TCGA-49-4514       TCGA-49-6742       TCGA-49-6743 
"NHEDC1 WILD-TYPE" "NHEDC1 WILD-TYPE"   "NHEDC1 MUTATED" "NHEDC1 WILD-TYPE" 
      TCGA-49-6744       TCGA-49-6745       TCGA-50-5044       TCGA-50-5045 
"NHEDC1 WILD-TYPE" "NHEDC1 WILD-TYPE" "NHEDC1 WILD-TYPE" "NHEDC1 WILD-TYPE" 
      TCGA-50-5049       TCGA-50-5051       TCGA-50-5055       TCGA-50-5066 
"NHEDC1 WILD-TYPE" "NHEDC1 WILD-TYPE" "NHEDC1 WILD-TYPE" "NHEDC1 WILD-TYPE" 
      TCGA-50-5068       TCGA-50-5072       TCGA-50-5930       TCGA-50-5931 
"NHEDC1 WILD-TYPE" "NHEDC1 WILD-TYPE" "NHEDC1 WILD-TYPE" "NHEDC1 WILD-TYPE" 
      TCGA-50-5932       TCGA-50-5933       TCGA-50-5935       TCGA-50-5936 
"NHEDC1 WILD-TYPE" "NHEDC1 WILD-TYPE" "NHEDC1 WILD-TYPE" "NHEDC1 WILD-TYPE" 
      TCGA-50-5939       TCGA-50-5941       TCGA-50-5942       TCGA-50-5944 
"NHEDC1 WILD-TYPE" "NHEDC1 WILD-TYPE" "NHEDC1 WILD-TYPE" "NHEDC1 WILD-TYPE" 
      TCGA-50-5946       TCGA-50-6590       TCGA-50-6591       TCGA-50-6592 
"NHEDC1 WILD-TYPE" "NHEDC1 WILD-TYPE" "NHEDC1 WILD-TYPE" "NHEDC1 WILD-TYPE" 
      TCGA-50-6593       TCGA-50-6594       TCGA-50-6595       TCGA-50-6597 
"NHEDC1 WILD-TYPE" "NHEDC1 WILD-TYPE" "NHEDC1 WILD-TYPE" "NHEDC1 WILD-TYPE" 
      TCGA-55-1592       TCGA-55-1594       TCGA-55-1595       TCGA-55-1596 
"NHEDC1 WILD-TYPE" "NHEDC1 WILD-TYPE" "NHEDC1 WILD-TYPE" "NHEDC1 WILD-TYPE" 
      TCGA-55-5899       TCGA-55-6543       TCGA-55-6642       TCGA-55-6712 
"NHEDC1 WILD-TYPE" "NHEDC1 WILD-TYPE" "NHEDC1 WILD-TYPE" "NHEDC1 WILD-TYPE" 
      TCGA-64-1676       TCGA-64-1677       TCGA-64-1678       TCGA-64-1680 
"NHEDC1 WILD-TYPE" "NHEDC1 WILD-TYPE" "NHEDC1 WILD-TYPE" "NHEDC1 WILD-TYPE" 
      TCGA-64-5774       TCGA-64-5775       TCGA-64-5778       TCGA-64-5779 
"NHEDC1 WILD-TYPE" "NHEDC1 WILD-TYPE" "NHEDC1 WILD-TYPE" "NHEDC1 WILD-TYPE" 
      TCGA-64-5781       TCGA-64-5815       TCGA-67-3770       TCGA-67-3771 
  "NHEDC1 MUTATED" "NHEDC1 WILD-TYPE" "NHEDC1 WILD-TYPE" "NHEDC1 WILD-TYPE" 
      TCGA-67-3772       TCGA-67-3773       TCGA-67-3774       TCGA-67-6215 
"NHEDC1 WILD-TYPE" "NHEDC1 WILD-TYPE" "NHEDC1 WILD-TYPE" "NHEDC1 WILD-TYPE" 
      TCGA-67-6216       TCGA-67-6217       TCGA-71-6725       TCGA-73-4658 
"NHEDC1 WILD-TYPE" "NHEDC1 WILD-TYPE" "NHEDC1 WILD-TYPE" "NHEDC1 WILD-TYPE" 
      TCGA-73-4659       TCGA-73-4662       TCGA-73-4666       TCGA-73-4668 
"NHEDC1 WILD-TYPE" "NHEDC1 WILD-TYPE" "NHEDC1 WILD-TYPE" "NHEDC1 WILD-TYPE" 
      TCGA-73-4670       TCGA-73-4675       TCGA-73-4676       TCGA-73-4677 
"NHEDC1 WILD-TYPE" "NHEDC1 WILD-TYPE" "NHEDC1 WILD-TYPE" "NHEDC1 WILD-TYPE" 
      TCGA-91-6828       TCGA-91-6829       TCGA-91-6831       TCGA-91-6835 
"NHEDC1 WILD-TYPE" "NHEDC1 WILD-TYPE" "NHEDC1 WILD-TYPE" "NHEDC1 WILD-TYPE" 
      TCGA-91-6836 
"NHEDC1 WILD-TYPE" 
[1] "hr=" "2.8"
D155V2, continuous
D155V3, binary
[1] "tbl2"
                  cls
clus               [,1] [,2]
  NHEDC1 MUTATED      4    5
  NHEDC1 WILD-TYPE   89   74
        clus
vv       NHEDC1 MUTATED NHEDC1 WILD-TYPE
  FEMALE              4               89
  MALE                5               74
D155V4, continuous
D155V5, multiclass
D155V6, multiclass
    clus
vv   NHEDC1 MUTATED NHEDC1 WILD-TYPE
  T1              1               40
  T2              7              101
  T3              0               14
  T4              1                7
D155V7, multiclass
       clus
vv      NHEDC1 MUTATED NHEDC1 WILD-TYPE
  N0                 6               89
  N1                 3               34
  N2+N3              0               35
D155V8, multiclass
    clus
vv   NHEDC1 MUTATED NHEDC1 WILD-TYPE
  M0              7              130
  M1              1                8
  MX              1               21
D155V9, multiclass
     clus
vv    NHEDC1 MUTATED NHEDC1 WILD-TYPE
  I                5               83
  II               2               31
  III              1               38
  IV               1                8
D155V10, binary
[1] "tbl2"
                  cls
clus               [,1] [,2]
  NHEDC1 MUTATED      0    9
  NHEDC1 WILD-TYPE   16  147
     clus
vv    NHEDC1 MUTATED NHEDC1 WILD-TYPE
  NO               0               16
  YES              9              147
D155V11, continuous
D155V12, continuous
D155V13, multiclass
                                             clus
vv                                            NHEDC1 MUTATED NHEDC1 WILD-TYPE
  CURRENT REFORMED SMOKER FOR < OR = 15 YEARS              4               58
  CURRENT REFORMED SMOKER FOR > 15 YEARS                   3               43
  CURRENT SMOKER                                           2               26
  LIFELONG NON-SMOKER                                      0               24
D155V14, continuous

Clustering(156) Variable = FAM47B MUTATION ANALYSIS
D156V1, survival
                  sevent
clus2               0  1
  FAM47B MUTATED    5  5
  FAM47B WILD-TYPE 94 45
  FAM47B MUTATED FAM47B WILD-TYPE 
              10              139 
  FAM47B MUTATED FAM47B WILD-TYPE 
               5               45 
$`FAM47B MUTATED`
TCGA-05-4398 TCGA-05-4420 TCGA-05-4432 TCGA-38-4631 TCGA-38-4632 TCGA-49-4505 
       47.05        29.95        25.02        11.64        44.61        14.07 
TCGA-50-5045 TCGA-55-1594 TCGA-64-5775 TCGA-64-5778 
       71.47        38.73         0.10        30.44 

$`FAM47B WILD-TYPE`
TCGA-05-4249 TCGA-05-4250 TCGA-05-4382 TCGA-05-4384 TCGA-05-4390 TCGA-05-4396 
       38.07         3.98        19.92        14.01        37.02         9.96 
TCGA-05-4397 TCGA-05-4402 TCGA-05-4405 TCGA-05-4415 TCGA-05-4417 TCGA-05-4418 
       24.03         8.02        20.05         2.96        14.93         8.98 
TCGA-05-4424 TCGA-05-4426 TCGA-05-4427 TCGA-05-4430 TCGA-05-4433 TCGA-05-4434 
       30.02        26.01        26.01        25.02        24.00        15.02 
TCGA-05-5420 TCGA-05-5423 TCGA-05-5425 TCGA-05-5429 TCGA-05-5715 TCGA-35-3615 
        1.02         4.96         2.96         0.99         2.04         0.46 
TCGA-35-4122 TCGA-35-4123 TCGA-35-5375 TCGA-38-4625 TCGA-38-4626 TCGA-38-4627 
        7.36         5.95         8.68        47.61        85.32        37.71 
TCGA-38-4628 TCGA-38-4629 TCGA-38-4630 TCGA-38-6178 TCGA-44-2655 TCGA-44-2656 
       49.02        28.37        35.28         5.19        18.87        19.10 
TCGA-44-2657 TCGA-44-2659 TCGA-44-2661 TCGA-44-2662 TCGA-44-2665 TCGA-44-2666 
       13.15        17.39         3.39        15.78        13.15         3.19 
TCGA-44-2668 TCGA-44-3396 TCGA-44-3398 TCGA-44-3918 TCGA-44-3919 TCGA-44-4112 
        8.09        10.22         8.32         6.44         6.21         4.60 
TCGA-44-5643 TCGA-44-5645 TCGA-44-6144 TCGA-44-6145 TCGA-44-6146 TCGA-44-6147 
        3.48         6.84         0.30         3.35         9.93         7.76 
TCGA-44-6148 TCGA-44-6774 TCGA-44-6775 TCGA-44-6776 TCGA-44-6777 TCGA-44-6778 
        3.12         5.42         2.70        63.72        32.45        36.49 
TCGA-44-6779 TCGA-49-4486 TCGA-49-4487 TCGA-49-4488 TCGA-49-4490 TCGA-49-4494 
       16.41        76.21        28.11        28.57        12.66        35.54 
TCGA-49-4501 TCGA-49-4506 TCGA-49-4507 TCGA-49-4510 TCGA-49-4512 TCGA-49-4514 
       46.72        32.84         8.81        29.46        29.75        43.20 
TCGA-49-6742 TCGA-49-6743 TCGA-49-6744 TCGA-49-6745 TCGA-50-5044 TCGA-50-5049 
       15.02        12.13        12.99         4.93        20.48        48.82 
TCGA-50-5051 TCGA-50-5055 TCGA-50-5066 TCGA-50-5068 TCGA-50-5072 TCGA-50-5930 
       14.96        25.81         9.76        49.28         8.05         9.27 
TCGA-50-5931 TCGA-50-5932 TCGA-50-5933 TCGA-50-5935 TCGA-50-5936 TCGA-50-5939 
        8.78        35.87        77.88        21.47         8.45        15.12 
TCGA-50-5941 TCGA-50-5942 TCGA-50-5944 TCGA-50-5946 TCGA-50-6590 TCGA-50-6591 
        9.37         4.44        12.26        11.47        42.31         3.88 
TCGA-50-6592 TCGA-50-6593 TCGA-50-6594 TCGA-50-6595 TCGA-50-6597 TCGA-55-1592 
       25.51        11.05        12.16         6.21        33.37        23.05 
TCGA-55-1595 TCGA-55-1596 TCGA-55-5899 TCGA-55-6543 TCGA-55-6642 TCGA-55-6712 
       48.62        45.17         2.86         0.07        32.61         0.79 
TCGA-64-1676 TCGA-64-1677 TCGA-64-1678 TCGA-64-1680 TCGA-64-5774 TCGA-64-5779 
       56.81        20.65        39.09        37.02        83.84        16.67 
TCGA-64-5781 TCGA-64-5815 TCGA-67-3770 TCGA-67-3771 TCGA-67-3772 TCGA-67-3773 
       39.52         7.33         0.99         1.97         0.59         2.04 
TCGA-67-3774 TCGA-67-6215 TCGA-67-6216 TCGA-67-6217 TCGA-71-6725 TCGA-73-4658 
        0.59         0.89         0.69        13.87         2.01        52.57 
TCGA-73-4659 TCGA-73-4662 TCGA-73-4666 TCGA-73-4668 TCGA-73-4670 TCGA-73-4675 
       23.38        29.95        20.28        15.35         0.46         1.32 
TCGA-73-4676 TCGA-73-4677 TCGA-91-6828 TCGA-91-6829 TCGA-91-6831 TCGA-91-6835 
        4.01         1.25         1.22        41.33         1.28         1.15 
TCGA-91-6836 
        0.36 

  FAM47B MUTATED FAM47B WILD-TYPE 
            0.10             0.07 
  FAM47B MUTATED FAM47B WILD-TYPE 
           71.47            85.32 
  FAM47B MUTATED FAM47B WILD-TYPE 
          30.195           12.990 
[1] "0.1 - 71.5 (30.2)" "0.1 - 85.3 (13.0)"
      TCGA-05-4249       TCGA-05-4250       TCGA-05-4382       TCGA-05-4384 
"FAM47B WILD-TYPE" "FAM47B WILD-TYPE" "FAM47B WILD-TYPE" "FAM47B WILD-TYPE" 
      TCGA-05-4390       TCGA-05-4396       TCGA-05-4397       TCGA-05-4398 
"FAM47B WILD-TYPE" "FAM47B WILD-TYPE" "FAM47B WILD-TYPE"   "FAM47B MUTATED" 
      TCGA-05-4402       TCGA-05-4405       TCGA-05-4415       TCGA-05-4417 
"FAM47B WILD-TYPE" "FAM47B WILD-TYPE" "FAM47B WILD-TYPE" "FAM47B WILD-TYPE" 
      TCGA-05-4418       TCGA-05-4420       TCGA-05-4424       TCGA-05-4426 
"FAM47B WILD-TYPE"   "FAM47B MUTATED" "FAM47B WILD-TYPE" "FAM47B WILD-TYPE" 
      TCGA-05-4427       TCGA-05-4430       TCGA-05-4432       TCGA-05-4433 
"FAM47B WILD-TYPE" "FAM47B WILD-TYPE"   "FAM47B MUTATED" "FAM47B WILD-TYPE" 
      TCGA-05-4434       TCGA-05-5420       TCGA-05-5423       TCGA-05-5425 
"FAM47B WILD-TYPE" "FAM47B WILD-TYPE" "FAM47B WILD-TYPE" "FAM47B WILD-TYPE" 
      TCGA-05-5429       TCGA-05-5715       TCGA-35-3615       TCGA-35-4122 
"FAM47B WILD-TYPE" "FAM47B WILD-TYPE" "FAM47B WILD-TYPE" "FAM47B WILD-TYPE" 
      TCGA-35-4123       TCGA-35-5375       TCGA-38-4625       TCGA-38-4626 
"FAM47B WILD-TYPE" "FAM47B WILD-TYPE" "FAM47B WILD-TYPE" "FAM47B WILD-TYPE" 
      TCGA-38-4627       TCGA-38-4628       TCGA-38-4629       TCGA-38-4630 
"FAM47B WILD-TYPE" "FAM47B WILD-TYPE" "FAM47B WILD-TYPE" "FAM47B WILD-TYPE" 
      TCGA-38-4631       TCGA-38-4632       TCGA-38-6178       TCGA-44-2655 
  "FAM47B MUTATED"   "FAM47B MUTATED" "FAM47B WILD-TYPE" "FAM47B WILD-TYPE" 
      TCGA-44-2656       TCGA-44-2657       TCGA-44-2659       TCGA-44-2661 
"FAM47B WILD-TYPE" "FAM47B WILD-TYPE" "FAM47B WILD-TYPE" "FAM47B WILD-TYPE" 
      TCGA-44-2662       TCGA-44-2665       TCGA-44-2666       TCGA-44-2668 
"FAM47B WILD-TYPE" "FAM47B WILD-TYPE" "FAM47B WILD-TYPE" "FAM47B WILD-TYPE" 
      TCGA-44-3396       TCGA-44-3398       TCGA-44-3918       TCGA-44-3919 
"FAM47B WILD-TYPE" "FAM47B WILD-TYPE" "FAM47B WILD-TYPE" "FAM47B WILD-TYPE" 
      TCGA-44-4112       TCGA-44-5643       TCGA-44-5645       TCGA-44-6144 
"FAM47B WILD-TYPE" "FAM47B WILD-TYPE" "FAM47B WILD-TYPE" "FAM47B WILD-TYPE" 
      TCGA-44-6145       TCGA-44-6146       TCGA-44-6147       TCGA-44-6148 
"FAM47B WILD-TYPE" "FAM47B WILD-TYPE" "FAM47B WILD-TYPE" "FAM47B WILD-TYPE" 
      TCGA-44-6774       TCGA-44-6775       TCGA-44-6776       TCGA-44-6777 
"FAM47B WILD-TYPE" "FAM47B WILD-TYPE" "FAM47B WILD-TYPE" "FAM47B WILD-TYPE" 
      TCGA-44-6778       TCGA-44-6779       TCGA-49-4486       TCGA-49-4487 
"FAM47B WILD-TYPE" "FAM47B WILD-TYPE" "FAM47B WILD-TYPE" "FAM47B WILD-TYPE" 
      TCGA-49-4488       TCGA-49-4490       TCGA-49-4494       TCGA-49-4501 
"FAM47B WILD-TYPE" "FAM47B WILD-TYPE" "FAM47B WILD-TYPE" "FAM47B WILD-TYPE" 
      TCGA-49-4505       TCGA-49-4506       TCGA-49-4507       TCGA-49-4510 
  "FAM47B MUTATED" "FAM47B WILD-TYPE" "FAM47B WILD-TYPE" "FAM47B WILD-TYPE" 
      TCGA-49-4512       TCGA-49-4514       TCGA-49-6742       TCGA-49-6743 
"FAM47B WILD-TYPE" "FAM47B WILD-TYPE" "FAM47B WILD-TYPE" "FAM47B WILD-TYPE" 
      TCGA-49-6744       TCGA-49-6745       TCGA-50-5044       TCGA-50-5045 
"FAM47B WILD-TYPE" "FAM47B WILD-TYPE" "FAM47B WILD-TYPE"   "FAM47B MUTATED" 
      TCGA-50-5049       TCGA-50-5051       TCGA-50-5055       TCGA-50-5066 
"FAM47B WILD-TYPE" "FAM47B WILD-TYPE" "FAM47B WILD-TYPE" "FAM47B WILD-TYPE" 
      TCGA-50-5068       TCGA-50-5072       TCGA-50-5930       TCGA-50-5931 
"FAM47B WILD-TYPE" "FAM47B WILD-TYPE" "FAM47B WILD-TYPE" "FAM47B WILD-TYPE" 
      TCGA-50-5932       TCGA-50-5933       TCGA-50-5935       TCGA-50-5936 
"FAM47B WILD-TYPE" "FAM47B WILD-TYPE" "FAM47B WILD-TYPE" "FAM47B WILD-TYPE" 
      TCGA-50-5939       TCGA-50-5941       TCGA-50-5942       TCGA-50-5944 
"FAM47B WILD-TYPE" "FAM47B WILD-TYPE" "FAM47B WILD-TYPE" "FAM47B WILD-TYPE" 
      TCGA-50-5946       TCGA-50-6590       TCGA-50-6591       TCGA-50-6592 
"FAM47B WILD-TYPE" "FAM47B WILD-TYPE" "FAM47B WILD-TYPE" "FAM47B WILD-TYPE" 
      TCGA-50-6593       TCGA-50-6594       TCGA-50-6595       TCGA-50-6597 
"FAM47B WILD-TYPE" "FAM47B WILD-TYPE" "FAM47B WILD-TYPE" "FAM47B WILD-TYPE" 
      TCGA-55-1592       TCGA-55-1594       TCGA-55-1595       TCGA-55-1596 
"FAM47B WILD-TYPE"   "FAM47B MUTATED" "FAM47B WILD-TYPE" "FAM47B WILD-TYPE" 
      TCGA-55-5899       TCGA-55-6543       TCGA-55-6642       TCGA-55-6712 
"FAM47B WILD-TYPE" "FAM47B WILD-TYPE" "FAM47B WILD-TYPE" "FAM47B WILD-TYPE" 
      TCGA-64-1676       TCGA-64-1677       TCGA-64-1678       TCGA-64-1680 
"FAM47B WILD-TYPE" "FAM47B WILD-TYPE" "FAM47B WILD-TYPE" "FAM47B WILD-TYPE" 
      TCGA-64-5774       TCGA-64-5775       TCGA-64-5778       TCGA-64-5779 
"FAM47B WILD-TYPE"   "FAM47B MUTATED"   "FAM47B MUTATED" "FAM47B WILD-TYPE" 
      TCGA-64-5781       TCGA-64-5815       TCGA-67-3770       TCGA-67-3771 
"FAM47B WILD-TYPE" "FAM47B WILD-TYPE" "FAM47B WILD-TYPE" "FAM47B WILD-TYPE" 
      TCGA-67-3772       TCGA-67-3773       TCGA-67-3774       TCGA-67-6215 
"FAM47B WILD-TYPE" "FAM47B WILD-TYPE" "FAM47B WILD-TYPE" "FAM47B WILD-TYPE" 
      TCGA-67-6216       TCGA-67-6217       TCGA-71-6725       TCGA-73-4658 
"FAM47B WILD-TYPE" "FAM47B WILD-TYPE" "FAM47B WILD-TYPE" "FAM47B WILD-TYPE" 
      TCGA-73-4659       TCGA-73-4662       TCGA-73-4666       TCGA-73-4668 
"FAM47B WILD-TYPE" "FAM47B WILD-TYPE" "FAM47B WILD-TYPE" "FAM47B WILD-TYPE" 
      TCGA-73-4670       TCGA-73-4675       TCGA-73-4676       TCGA-73-4677 
"FAM47B WILD-TYPE" "FAM47B WILD-TYPE" "FAM47B WILD-TYPE" "FAM47B WILD-TYPE" 
      TCGA-91-6828       TCGA-91-6829       TCGA-91-6831       TCGA-91-6835 
"FAM47B WILD-TYPE" "FAM47B WILD-TYPE" "FAM47B WILD-TYPE" "FAM47B WILD-TYPE" 
      TCGA-91-6836 
"FAM47B WILD-TYPE" 
      TCGA-05-4249       TCGA-05-4250       TCGA-05-4382       TCGA-05-4384 
"FAM47B WILD-TYPE" "FAM47B WILD-TYPE" "FAM47B WILD-TYPE" "FAM47B WILD-TYPE" 
      TCGA-05-4390       TCGA-05-4396       TCGA-05-4397       TCGA-05-4398 
"FAM47B WILD-TYPE" "FAM47B WILD-TYPE" "FAM47B WILD-TYPE"   "FAM47B MUTATED" 
      TCGA-05-4402       TCGA-05-4405       TCGA-05-4415       TCGA-05-4417 
"FAM47B WILD-TYPE" "FAM47B WILD-TYPE" "FAM47B WILD-TYPE" "FAM47B WILD-TYPE" 
      TCGA-05-4418       TCGA-05-4420       TCGA-05-4424       TCGA-05-4426 
"FAM47B WILD-TYPE"   "FAM47B MUTATED" "FAM47B WILD-TYPE" "FAM47B WILD-TYPE" 
      TCGA-05-4427       TCGA-05-4430       TCGA-05-4432       TCGA-05-4433 
"FAM47B WILD-TYPE" "FAM47B WILD-TYPE"   "FAM47B MUTATED" "FAM47B WILD-TYPE" 
      TCGA-05-4434       TCGA-05-5420       TCGA-05-5423       TCGA-05-5425 
"FAM47B WILD-TYPE" "FAM47B WILD-TYPE" "FAM47B WILD-TYPE" "FAM47B WILD-TYPE" 
      TCGA-05-5429       TCGA-05-5715       TCGA-35-3615       TCGA-35-4122 
"FAM47B WILD-TYPE" "FAM47B WILD-TYPE" "FAM47B WILD-TYPE" "FAM47B WILD-TYPE" 
      TCGA-35-4123       TCGA-35-5375       TCGA-38-4625       TCGA-38-4626 
"FAM47B WILD-TYPE" "FAM47B WILD-TYPE" "FAM47B WILD-TYPE" "FAM47B WILD-TYPE" 
      TCGA-38-4627       TCGA-38-4628       TCGA-38-4629       TCGA-38-4630 
"FAM47B WILD-TYPE" "FAM47B WILD-TYPE" "FAM47B WILD-TYPE" "FAM47B WILD-TYPE" 
      TCGA-38-4631       TCGA-38-4632       TCGA-38-6178       TCGA-44-2655 
  "FAM47B MUTATED"   "FAM47B MUTATED" "FAM47B WILD-TYPE" "FAM47B WILD-TYPE" 
      TCGA-44-2656       TCGA-44-2657       TCGA-44-2659       TCGA-44-2661 
"FAM47B WILD-TYPE" "FAM47B WILD-TYPE" "FAM47B WILD-TYPE" "FAM47B WILD-TYPE" 
      TCGA-44-2662       TCGA-44-2665       TCGA-44-2666       TCGA-44-2668 
"FAM47B WILD-TYPE" "FAM47B WILD-TYPE" "FAM47B WILD-TYPE" "FAM47B WILD-TYPE" 
      TCGA-44-3396       TCGA-44-3398       TCGA-44-3918       TCGA-44-3919 
"FAM47B WILD-TYPE" "FAM47B WILD-TYPE" "FAM47B WILD-TYPE" "FAM47B WILD-TYPE" 
      TCGA-44-4112       TCGA-44-5643       TCGA-44-5645       TCGA-44-6144 
"FAM47B WILD-TYPE" "FAM47B WILD-TYPE" "FAM47B WILD-TYPE" "FAM47B WILD-TYPE" 
      TCGA-44-6145       TCGA-44-6146       TCGA-44-6147       TCGA-44-6148 
"FAM47B WILD-TYPE" "FAM47B WILD-TYPE" "FAM47B WILD-TYPE" "FAM47B WILD-TYPE" 
      TCGA-44-6774       TCGA-44-6775       TCGA-44-6776       TCGA-44-6777 
"FAM47B WILD-TYPE" "FAM47B WILD-TYPE" "FAM47B WILD-TYPE" "FAM47B WILD-TYPE" 
      TCGA-44-6778       TCGA-44-6779       TCGA-49-4486       TCGA-49-4487 
"FAM47B WILD-TYPE" "FAM47B WILD-TYPE" "FAM47B WILD-TYPE" "FAM47B WILD-TYPE" 
      TCGA-49-4488       TCGA-49-4490       TCGA-49-4494       TCGA-49-4501 
"FAM47B WILD-TYPE" "FAM47B WILD-TYPE" "FAM47B WILD-TYPE" "FAM47B WILD-TYPE" 
      TCGA-49-4505       TCGA-49-4506       TCGA-49-4507       TCGA-49-4510 
  "FAM47B MUTATED" "FAM47B WILD-TYPE" "FAM47B WILD-TYPE" "FAM47B WILD-TYPE" 
      TCGA-49-4512       TCGA-49-4514       TCGA-49-6742       TCGA-49-6743 
"FAM47B WILD-TYPE" "FAM47B WILD-TYPE" "FAM47B WILD-TYPE" "FAM47B WILD-TYPE" 
      TCGA-49-6744       TCGA-49-6745       TCGA-50-5044       TCGA-50-5045 
"FAM47B WILD-TYPE" "FAM47B WILD-TYPE" "FAM47B WILD-TYPE"   "FAM47B MUTATED" 
      TCGA-50-5049       TCGA-50-5051       TCGA-50-5055       TCGA-50-5066 
"FAM47B WILD-TYPE" "FAM47B WILD-TYPE" "FAM47B WILD-TYPE" "FAM47B WILD-TYPE" 
      TCGA-50-5068       TCGA-50-5072       TCGA-50-5930       TCGA-50-5931 
"FAM47B WILD-TYPE" "FAM47B WILD-TYPE" "FAM47B WILD-TYPE" "FAM47B WILD-TYPE" 
      TCGA-50-5932       TCGA-50-5933       TCGA-50-5935       TCGA-50-5936 
"FAM47B WILD-TYPE" "FAM47B WILD-TYPE" "FAM47B WILD-TYPE" "FAM47B WILD-TYPE" 
      TCGA-50-5939       TCGA-50-5941       TCGA-50-5942       TCGA-50-5944 
"FAM47B WILD-TYPE" "FAM47B WILD-TYPE" "FAM47B WILD-TYPE" "FAM47B WILD-TYPE" 
      TCGA-50-5946       TCGA-50-6590       TCGA-50-6591       TCGA-50-6592 
"FAM47B WILD-TYPE" "FAM47B WILD-TYPE" "FAM47B WILD-TYPE" "FAM47B WILD-TYPE" 
      TCGA-50-6593       TCGA-50-6594       TCGA-50-6595       TCGA-50-6597 
"FAM47B WILD-TYPE" "FAM47B WILD-TYPE" "FAM47B WILD-TYPE" "FAM47B WILD-TYPE" 
      TCGA-55-1592       TCGA-55-1594       TCGA-55-1595       TCGA-55-1596 
"FAM47B WILD-TYPE"   "FAM47B MUTATED" "FAM47B WILD-TYPE" "FAM47B WILD-TYPE" 
      TCGA-55-5899       TCGA-55-6543       TCGA-55-6642       TCGA-55-6712 
"FAM47B WILD-TYPE" "FAM47B WILD-TYPE" "FAM47B WILD-TYPE" "FAM47B WILD-TYPE" 
      TCGA-64-1676       TCGA-64-1677       TCGA-64-1678       TCGA-64-1680 
"FAM47B WILD-TYPE" "FAM47B WILD-TYPE" "FAM47B WILD-TYPE" "FAM47B WILD-TYPE" 
      TCGA-64-5774       TCGA-64-5775       TCGA-64-5778       TCGA-64-5779 
"FAM47B WILD-TYPE"   "FAM47B MUTATED"   "FAM47B MUTATED" "FAM47B WILD-TYPE" 
      TCGA-64-5781       TCGA-64-5815       TCGA-67-3770       TCGA-67-3771 
"FAM47B WILD-TYPE" "FAM47B WILD-TYPE" "FAM47B WILD-TYPE" "FAM47B WILD-TYPE" 
      TCGA-67-3772       TCGA-67-3773       TCGA-67-3774       TCGA-67-6215 
"FAM47B WILD-TYPE" "FAM47B WILD-TYPE" "FAM47B WILD-TYPE" "FAM47B WILD-TYPE" 
      TCGA-67-6216       TCGA-67-6217       TCGA-71-6725       TCGA-73-4658 
"FAM47B WILD-TYPE" "FAM47B WILD-TYPE" "FAM47B WILD-TYPE" "FAM47B WILD-TYPE" 
      TCGA-73-4659       TCGA-73-4662       TCGA-73-4666       TCGA-73-4668 
"FAM47B WILD-TYPE" "FAM47B WILD-TYPE" "FAM47B WILD-TYPE" "FAM47B WILD-TYPE" 
      TCGA-73-4670       TCGA-73-4675       TCGA-73-4676       TCGA-73-4677 
"FAM47B WILD-TYPE" "FAM47B WILD-TYPE" "FAM47B WILD-TYPE" "FAM47B WILD-TYPE" 
      TCGA-91-6828       TCGA-91-6829       TCGA-91-6831       TCGA-91-6835 
"FAM47B WILD-TYPE" "FAM47B WILD-TYPE" "FAM47B WILD-TYPE" "FAM47B WILD-TYPE" 
      TCGA-91-6836 
"FAM47B WILD-TYPE" 
      TCGA-05-4249       TCGA-05-4250       TCGA-05-4382       TCGA-05-4384 
"FAM47B WILD-TYPE" "FAM47B WILD-TYPE" "FAM47B WILD-TYPE" "FAM47B WILD-TYPE" 
      TCGA-05-4390       TCGA-05-4396       TCGA-05-4397       TCGA-05-4398 
"FAM47B WILD-TYPE" "FAM47B WILD-TYPE" "FAM47B WILD-TYPE"   "FAM47B MUTATED" 
      TCGA-05-4402       TCGA-05-4405       TCGA-05-4415       TCGA-05-4417 
"FAM47B WILD-TYPE" "FAM47B WILD-TYPE" "FAM47B WILD-TYPE" "FAM47B WILD-TYPE" 
      TCGA-05-4418       TCGA-05-4420       TCGA-05-4424       TCGA-05-4426 
"FAM47B WILD-TYPE"   "FAM47B MUTATED" "FAM47B WILD-TYPE" "FAM47B WILD-TYPE" 
      TCGA-05-4427       TCGA-05-4430       TCGA-05-4432       TCGA-05-4433 
"FAM47B WILD-TYPE" "FAM47B WILD-TYPE"   "FAM47B MUTATED" "FAM47B WILD-TYPE" 
      TCGA-05-4434       TCGA-05-5420       TCGA-05-5423       TCGA-05-5425 
"FAM47B WILD-TYPE" "FAM47B WILD-TYPE" "FAM47B WILD-TYPE" "FAM47B WILD-TYPE" 
      TCGA-05-5429       TCGA-05-5715       TCGA-35-3615       TCGA-35-4122 
"FAM47B WILD-TYPE" "FAM47B WILD-TYPE" "FAM47B WILD-TYPE" "FAM47B WILD-TYPE" 
      TCGA-35-4123       TCGA-35-5375       TCGA-38-4625       TCGA-38-4626 
"FAM47B WILD-TYPE" "FAM47B WILD-TYPE" "FAM47B WILD-TYPE" "FAM47B WILD-TYPE" 
      TCGA-38-4627       TCGA-38-4628       TCGA-38-4629       TCGA-38-4630 
"FAM47B WILD-TYPE" "FAM47B WILD-TYPE" "FAM47B WILD-TYPE" "FAM47B WILD-TYPE" 
      TCGA-38-4631       TCGA-38-4632       TCGA-38-6178       TCGA-44-2655 
  "FAM47B MUTATED"   "FAM47B MUTATED" "FAM47B WILD-TYPE" "FAM47B WILD-TYPE" 
      TCGA-44-2656       TCGA-44-2657       TCGA-44-2659       TCGA-44-2661 
"FAM47B WILD-TYPE" "FAM47B WILD-TYPE" "FAM47B WILD-TYPE" "FAM47B WILD-TYPE" 
      TCGA-44-2662       TCGA-44-2665       TCGA-44-2666       TCGA-44-2668 
"FAM47B WILD-TYPE" "FAM47B WILD-TYPE" "FAM47B WILD-TYPE" "FAM47B WILD-TYPE" 
      TCGA-44-3396       TCGA-44-3398       TCGA-44-3918       TCGA-44-3919 
"FAM47B WILD-TYPE" "FAM47B WILD-TYPE" "FAM47B WILD-TYPE" "FAM47B WILD-TYPE" 
      TCGA-44-4112       TCGA-44-5643       TCGA-44-5645       TCGA-44-6144 
"FAM47B WILD-TYPE" "FAM47B WILD-TYPE" "FAM47B WILD-TYPE" "FAM47B WILD-TYPE" 
      TCGA-44-6145       TCGA-44-6146       TCGA-44-6147       TCGA-44-6148 
"FAM47B WILD-TYPE" "FAM47B WILD-TYPE" "FAM47B WILD-TYPE" "FAM47B WILD-TYPE" 
      TCGA-44-6774       TCGA-44-6775       TCGA-44-6776       TCGA-44-6777 
"FAM47B WILD-TYPE" "FAM47B WILD-TYPE" "FAM47B WILD-TYPE" "FAM47B WILD-TYPE" 
      TCGA-44-6778       TCGA-44-6779       TCGA-49-4486       TCGA-49-4487 
"FAM47B WILD-TYPE" "FAM47B WILD-TYPE" "FAM47B WILD-TYPE" "FAM47B WILD-TYPE" 
      TCGA-49-4488       TCGA-49-4490       TCGA-49-4494       TCGA-49-4501 
"FAM47B WILD-TYPE" "FAM47B WILD-TYPE" "FAM47B WILD-TYPE" "FAM47B WILD-TYPE" 
      TCGA-49-4505       TCGA-49-4506       TCGA-49-4507       TCGA-49-4510 
  "FAM47B MUTATED" "FAM47B WILD-TYPE" "FAM47B WILD-TYPE" "FAM47B WILD-TYPE" 
      TCGA-49-4512       TCGA-49-4514       TCGA-49-6742       TCGA-49-6743 
"FAM47B WILD-TYPE" "FAM47B WILD-TYPE" "FAM47B WILD-TYPE" "FAM47B WILD-TYPE" 
      TCGA-49-6744       TCGA-49-6745       TCGA-50-5044       TCGA-50-5045 
"FAM47B WILD-TYPE" "FAM47B WILD-TYPE" "FAM47B WILD-TYPE"   "FAM47B MUTATED" 
      TCGA-50-5049       TCGA-50-5051       TCGA-50-5055       TCGA-50-5066 
"FAM47B WILD-TYPE" "FAM47B WILD-TYPE" "FAM47B WILD-TYPE" "FAM47B WILD-TYPE" 
      TCGA-50-5068       TCGA-50-5072       TCGA-50-5930       TCGA-50-5931 
"FAM47B WILD-TYPE" "FAM47B WILD-TYPE" "FAM47B WILD-TYPE" "FAM47B WILD-TYPE" 
      TCGA-50-5932       TCGA-50-5933       TCGA-50-5935       TCGA-50-5936 
"FAM47B WILD-TYPE" "FAM47B WILD-TYPE" "FAM47B WILD-TYPE" "FAM47B WILD-TYPE" 
      TCGA-50-5939       TCGA-50-5941       TCGA-50-5942       TCGA-50-5944 
"FAM47B WILD-TYPE" "FAM47B WILD-TYPE" "FAM47B WILD-TYPE" "FAM47B WILD-TYPE" 
      TCGA-50-5946       TCGA-50-6590       TCGA-50-6591       TCGA-50-6592 
"FAM47B WILD-TYPE" "FAM47B WILD-TYPE" "FAM47B WILD-TYPE" "FAM47B WILD-TYPE" 
      TCGA-50-6593       TCGA-50-6594       TCGA-50-6595       TCGA-50-6597 
"FAM47B WILD-TYPE" "FAM47B WILD-TYPE" "FAM47B WILD-TYPE" "FAM47B WILD-TYPE" 
      TCGA-55-1592       TCGA-55-1594       TCGA-55-1595       TCGA-55-1596 
"FAM47B WILD-TYPE"   "FAM47B MUTATED" "FAM47B WILD-TYPE" "FAM47B WILD-TYPE" 
      TCGA-55-5899       TCGA-55-6543       TCGA-55-6642       TCGA-55-6712 
"FAM47B WILD-TYPE" "FAM47B WILD-TYPE" "FAM47B WILD-TYPE" "FAM47B WILD-TYPE" 
      TCGA-64-1676       TCGA-64-1677       TCGA-64-1678       TCGA-64-1680 
"FAM47B WILD-TYPE" "FAM47B WILD-TYPE" "FAM47B WILD-TYPE" "FAM47B WILD-TYPE" 
      TCGA-64-5774       TCGA-64-5775       TCGA-64-5778       TCGA-64-5779 
"FAM47B WILD-TYPE"   "FAM47B MUTATED"   "FAM47B MUTATED" "FAM47B WILD-TYPE" 
      TCGA-64-5781       TCGA-64-5815       TCGA-67-3770       TCGA-67-3771 
"FAM47B WILD-TYPE" "FAM47B WILD-TYPE" "FAM47B WILD-TYPE" "FAM47B WILD-TYPE" 
      TCGA-67-3772       TCGA-67-3773       TCGA-67-3774       TCGA-67-6215 
"FAM47B WILD-TYPE" "FAM47B WILD-TYPE" "FAM47B WILD-TYPE" "FAM47B WILD-TYPE" 
      TCGA-67-6216       TCGA-67-6217       TCGA-71-6725       TCGA-73-4658 
"FAM47B WILD-TYPE" "FAM47B WILD-TYPE" "FAM47B WILD-TYPE" "FAM47B WILD-TYPE" 
      TCGA-73-4659       TCGA-73-4662       TCGA-73-4666       TCGA-73-4668 
"FAM47B WILD-TYPE" "FAM47B WILD-TYPE" "FAM47B WILD-TYPE" "FAM47B WILD-TYPE" 
      TCGA-73-4670       TCGA-73-4675       TCGA-73-4676       TCGA-73-4677 
"FAM47B WILD-TYPE" "FAM47B WILD-TYPE" "FAM47B WILD-TYPE" "FAM47B WILD-TYPE" 
      TCGA-91-6828       TCGA-91-6829       TCGA-91-6831       TCGA-91-6835 
"FAM47B WILD-TYPE" "FAM47B WILD-TYPE" "FAM47B WILD-TYPE" "FAM47B WILD-TYPE" 
      TCGA-91-6836 
"FAM47B WILD-TYPE" 
[1] "hr=" "1.1"
D156V2, continuous
D156V3, binary
[1] "tbl2"
                  cls
clus               [,1] [,2]
  FAM47B MUTATED      6    8
  FAM47B WILD-TYPE   87   71
        clus
vv       FAM47B MUTATED FAM47B WILD-TYPE
  FEMALE              6               87
  MALE                8               71
D156V4, continuous
[1] "Remove cluster labels:" "FAM47B MUTATED"        
clus
  FAM47B MUTATED FAM47B WILD-TYPE 
               1               11 
      TCGA-35-4122       TCGA-35-4123       TCGA-35-5375       TCGA-64-1677 
"FAM47B WILD-TYPE" "FAM47B WILD-TYPE" "FAM47B WILD-TYPE" "FAM47B WILD-TYPE" 
      TCGA-71-6725       TCGA-73-4659       TCGA-73-4662       TCGA-73-4666 
"FAM47B WILD-TYPE" "FAM47B WILD-TYPE" "FAM47B WILD-TYPE" "FAM47B WILD-TYPE" 
      TCGA-73-4668       TCGA-73-4676       TCGA-75-5122 
"FAM47B WILD-TYPE" "FAM47B WILD-TYPE" "FAM47B WILD-TYPE" 
D156V5, multiclass
D156V6, multiclass
    clus
vv   FAM47B MUTATED FAM47B WILD-TYPE
  T1              0               41
  T2             10               98
  T3              2               12
  T4              2                6
D156V7, multiclass
       clus
vv      FAM47B MUTATED FAM47B WILD-TYPE
  N0                 6               89
  N1                 5               32
  N2+N3              3               32
D156V8, multiclass
    clus
vv   FAM47B MUTATED FAM47B WILD-TYPE
  M0             12              125
  M1              1                8
  MX              1               21
D156V9, multiclass
     clus
vv    FAM47B MUTATED FAM47B WILD-TYPE
  I                5               83
  II               4               29
  III              4               35
  IV               1                8
D156V10, binary
[1] "tbl2"
                  cls
clus               [,1] [,2]
  FAM47B MUTATED      1   13
  FAM47B WILD-TYPE   15  143
     clus
vv    FAM47B MUTATED FAM47B WILD-TYPE
  NO               1               15
  YES             13              143
D156V11, continuous
D156V12, continuous
D156V13, multiclass
                                             clus
vv                                            FAM47B MUTATED FAM47B WILD-TYPE
  CURRENT REFORMED SMOKER FOR < OR = 15 YEARS              5               57
  CURRENT REFORMED SMOKER FOR > 15 YEARS                   2               44
  CURRENT SMOKER                                           6               22
  LIFELONG NON-SMOKER                                      0               24
D156V14, continuous

Clustering(157) Variable = OR8K3 MUTATION ANALYSIS
D157V1, survival
                 sevent
clus2              0  1
  OR8K3 MUTATED    2  3
  OR8K3 WILD-TYPE 97 47
  OR8K3 MUTATED OR8K3 WILD-TYPE 
              5             144 
  OR8K3 MUTATED OR8K3 WILD-TYPE 
              3              47 
$`OR8K3 MUTATED`
TCGA-05-4396 TCGA-50-6590 TCGA-50-6592 TCGA-64-5781 TCGA-67-6217 
        9.96        42.31        25.51        39.52        13.87 

$`OR8K3 WILD-TYPE`
TCGA-05-4249 TCGA-05-4250 TCGA-05-4382 TCGA-05-4384 TCGA-05-4390 TCGA-05-4397 
       38.07         3.98        19.92        14.01        37.02        24.03 
TCGA-05-4398 TCGA-05-4402 TCGA-05-4405 TCGA-05-4415 TCGA-05-4417 TCGA-05-4418 
       47.05         8.02        20.05         2.96        14.93         8.98 
TCGA-05-4420 TCGA-05-4424 TCGA-05-4426 TCGA-05-4427 TCGA-05-4430 TCGA-05-4432 
       29.95        30.02        26.01        26.01        25.02        25.02 
TCGA-05-4433 TCGA-05-4434 TCGA-05-5420 TCGA-05-5423 TCGA-05-5425 TCGA-05-5429 
       24.00        15.02         1.02         4.96         2.96         0.99 
TCGA-05-5715 TCGA-35-3615 TCGA-35-4122 TCGA-35-4123 TCGA-35-5375 TCGA-38-4625 
        2.04         0.46         7.36         5.95         8.68        47.61 
TCGA-38-4626 TCGA-38-4627 TCGA-38-4628 TCGA-38-4629 TCGA-38-4630 TCGA-38-4631 
       85.32        37.71        49.02        28.37        35.28        11.64 
TCGA-38-4632 TCGA-38-6178 TCGA-44-2655 TCGA-44-2656 TCGA-44-2657 TCGA-44-2659 
       44.61         5.19        18.87        19.10        13.15        17.39 
TCGA-44-2661 TCGA-44-2662 TCGA-44-2665 TCGA-44-2666 TCGA-44-2668 TCGA-44-3396 
        3.39        15.78        13.15         3.19         8.09        10.22 
TCGA-44-3398 TCGA-44-3918 TCGA-44-3919 TCGA-44-4112 TCGA-44-5643 TCGA-44-5645 
        8.32         6.44         6.21         4.60         3.48         6.84 
TCGA-44-6144 TCGA-44-6145 TCGA-44-6146 TCGA-44-6147 TCGA-44-6148 TCGA-44-6774 
        0.30         3.35         9.93         7.76         3.12         5.42 
TCGA-44-6775 TCGA-44-6776 TCGA-44-6777 TCGA-44-6778 TCGA-44-6779 TCGA-49-4486 
        2.70        63.72        32.45        36.49        16.41        76.21 
TCGA-49-4487 TCGA-49-4488 TCGA-49-4490 TCGA-49-4494 TCGA-49-4501 TCGA-49-4505 
       28.11        28.57        12.66        35.54        46.72        14.07 
TCGA-49-4506 TCGA-49-4507 TCGA-49-4510 TCGA-49-4512 TCGA-49-4514 TCGA-49-6742 
       32.84         8.81        29.46        29.75        43.20        15.02 
TCGA-49-6743 TCGA-49-6744 TCGA-49-6745 TCGA-50-5044 TCGA-50-5045 TCGA-50-5049 
       12.13        12.99         4.93        20.48        71.47        48.82 
TCGA-50-5051 TCGA-50-5055 TCGA-50-5066 TCGA-50-5068 TCGA-50-5072 TCGA-50-5930 
       14.96        25.81         9.76        49.28         8.05         9.27 
TCGA-50-5931 TCGA-50-5932 TCGA-50-5933 TCGA-50-5935 TCGA-50-5936 TCGA-50-5939 
        8.78        35.87        77.88        21.47         8.45        15.12 
TCGA-50-5941 TCGA-50-5942 TCGA-50-5944 TCGA-50-5946 TCGA-50-6591 TCGA-50-6593 
        9.37         4.44        12.26        11.47         3.88        11.05 
TCGA-50-6594 TCGA-50-6595 TCGA-50-6597 TCGA-55-1592 TCGA-55-1594 TCGA-55-1595 
       12.16         6.21        33.37        23.05        38.73        48.62 
TCGA-55-1596 TCGA-55-5899 TCGA-55-6543 TCGA-55-6642 TCGA-55-6712 TCGA-64-1676 
       45.17         2.86         0.07        32.61         0.79        56.81 
TCGA-64-1677 TCGA-64-1678 TCGA-64-1680 TCGA-64-5774 TCGA-64-5775 TCGA-64-5778 
       20.65        39.09        37.02        83.84         0.10        30.44 
TCGA-64-5779 TCGA-64-5815 TCGA-67-3770 TCGA-67-3771 TCGA-67-3772 TCGA-67-3773 
       16.67         7.33         0.99         1.97         0.59         2.04 
TCGA-67-3774 TCGA-67-6215 TCGA-67-6216 TCGA-71-6725 TCGA-73-4658 TCGA-73-4659 
        0.59         0.89         0.69         2.01        52.57        23.38 
TCGA-73-4662 TCGA-73-4666 TCGA-73-4668 TCGA-73-4670 TCGA-73-4675 TCGA-73-4676 
       29.95        20.28        15.35         0.46         1.32         4.01 
TCGA-73-4677 TCGA-91-6828 TCGA-91-6829 TCGA-91-6831 TCGA-91-6835 TCGA-91-6836 
        1.25         1.22        41.33         1.28         1.15         0.36 

  OR8K3 MUTATED OR8K3 WILD-TYPE 
           9.96            0.07 
  OR8K3 MUTATED OR8K3 WILD-TYPE 
          42.31           85.32 
  OR8K3 MUTATED OR8K3 WILD-TYPE 
          25.51           13.15 
[1] "10.0 - 42.3 (25.5)" "0.1 - 85.3 (13.2)" 
     TCGA-05-4249      TCGA-05-4250      TCGA-05-4382      TCGA-05-4384 
"OR8K3 WILD-TYPE" "OR8K3 WILD-TYPE" "OR8K3 WILD-TYPE" "OR8K3 WILD-TYPE" 
     TCGA-05-4390      TCGA-05-4396      TCGA-05-4397      TCGA-05-4398 
"OR8K3 WILD-TYPE"   "OR8K3 MUTATED" "OR8K3 WILD-TYPE" "OR8K3 WILD-TYPE" 
     TCGA-05-4402      TCGA-05-4405      TCGA-05-4415      TCGA-05-4417 
"OR8K3 WILD-TYPE" "OR8K3 WILD-TYPE" "OR8K3 WILD-TYPE" "OR8K3 WILD-TYPE" 
     TCGA-05-4418      TCGA-05-4420      TCGA-05-4424      TCGA-05-4426 
"OR8K3 WILD-TYPE" "OR8K3 WILD-TYPE" "OR8K3 WILD-TYPE" "OR8K3 WILD-TYPE" 
     TCGA-05-4427      TCGA-05-4430      TCGA-05-4432      TCGA-05-4433 
"OR8K3 WILD-TYPE" "OR8K3 WILD-TYPE" "OR8K3 WILD-TYPE" "OR8K3 WILD-TYPE" 
     TCGA-05-4434      TCGA-05-5420      TCGA-05-5423      TCGA-05-5425 
"OR8K3 WILD-TYPE" "OR8K3 WILD-TYPE" "OR8K3 WILD-TYPE" "OR8K3 WILD-TYPE" 
     TCGA-05-5429      TCGA-05-5715      TCGA-35-3615      TCGA-35-4122 
"OR8K3 WILD-TYPE" "OR8K3 WILD-TYPE" "OR8K3 WILD-TYPE" "OR8K3 WILD-TYPE" 
     TCGA-35-4123      TCGA-35-5375      TCGA-38-4625      TCGA-38-4626 
"OR8K3 WILD-TYPE" "OR8K3 WILD-TYPE" "OR8K3 WILD-TYPE" "OR8K3 WILD-TYPE" 
     TCGA-38-4627      TCGA-38-4628      TCGA-38-4629      TCGA-38-4630 
"OR8K3 WILD-TYPE" "OR8K3 WILD-TYPE" "OR8K3 WILD-TYPE" "OR8K3 WILD-TYPE" 
     TCGA-38-4631      TCGA-38-4632      TCGA-38-6178      TCGA-44-2655 
"OR8K3 WILD-TYPE" "OR8K3 WILD-TYPE" "OR8K3 WILD-TYPE" "OR8K3 WILD-TYPE" 
     TCGA-44-2656      TCGA-44-2657      TCGA-44-2659      TCGA-44-2661 
"OR8K3 WILD-TYPE" "OR8K3 WILD-TYPE" "OR8K3 WILD-TYPE" "OR8K3 WILD-TYPE" 
     TCGA-44-2662      TCGA-44-2665      TCGA-44-2666      TCGA-44-2668 
"OR8K3 WILD-TYPE" "OR8K3 WILD-TYPE" "OR8K3 WILD-TYPE" "OR8K3 WILD-TYPE" 
     TCGA-44-3396      TCGA-44-3398      TCGA-44-3918      TCGA-44-3919 
"OR8K3 WILD-TYPE" "OR8K3 WILD-TYPE" "OR8K3 WILD-TYPE" "OR8K3 WILD-TYPE" 
     TCGA-44-4112      TCGA-44-5643      TCGA-44-5645      TCGA-44-6144 
"OR8K3 WILD-TYPE" "OR8K3 WILD-TYPE" "OR8K3 WILD-TYPE" "OR8K3 WILD-TYPE" 
     TCGA-44-6145      TCGA-44-6146      TCGA-44-6147      TCGA-44-6148 
"OR8K3 WILD-TYPE" "OR8K3 WILD-TYPE" "OR8K3 WILD-TYPE" "OR8K3 WILD-TYPE" 
     TCGA-44-6774      TCGA-44-6775      TCGA-44-6776      TCGA-44-6777 
"OR8K3 WILD-TYPE" "OR8K3 WILD-TYPE" "OR8K3 WILD-TYPE" "OR8K3 WILD-TYPE" 
     TCGA-44-6778      TCGA-44-6779      TCGA-49-4486      TCGA-49-4487 
"OR8K3 WILD-TYPE" "OR8K3 WILD-TYPE" "OR8K3 WILD-TYPE" "OR8K3 WILD-TYPE" 
     TCGA-49-4488      TCGA-49-4490      TCGA-49-4494      TCGA-49-4501 
"OR8K3 WILD-TYPE" "OR8K3 WILD-TYPE" "OR8K3 WILD-TYPE" "OR8K3 WILD-TYPE" 
     TCGA-49-4505      TCGA-49-4506      TCGA-49-4507      TCGA-49-4510 
"OR8K3 WILD-TYPE" "OR8K3 WILD-TYPE" "OR8K3 WILD-TYPE" "OR8K3 WILD-TYPE" 
     TCGA-49-4512      TCGA-49-4514      TCGA-49-6742      TCGA-49-6743 
"OR8K3 WILD-TYPE" "OR8K3 WILD-TYPE" "OR8K3 WILD-TYPE" "OR8K3 WILD-TYPE" 
     TCGA-49-6744      TCGA-49-6745      TCGA-50-5044      TCGA-50-5045 
"OR8K3 WILD-TYPE" "OR8K3 WILD-TYPE" "OR8K3 WILD-TYPE" "OR8K3 WILD-TYPE" 
     TCGA-50-5049      TCGA-50-5051      TCGA-50-5055      TCGA-50-5066 
"OR8K3 WILD-TYPE" "OR8K3 WILD-TYPE" "OR8K3 WILD-TYPE" "OR8K3 WILD-TYPE" 
     TCGA-50-5068      TCGA-50-5072      TCGA-50-5930      TCGA-50-5931 
"OR8K3 WILD-TYPE" "OR8K3 WILD-TYPE" "OR8K3 WILD-TYPE" "OR8K3 WILD-TYPE" 
     TCGA-50-5932      TCGA-50-5933      TCGA-50-5935      TCGA-50-5936 
"OR8K3 WILD-TYPE" "OR8K3 WILD-TYPE" "OR8K3 WILD-TYPE" "OR8K3 WILD-TYPE" 
     TCGA-50-5939      TCGA-50-5941      TCGA-50-5942      TCGA-50-5944 
"OR8K3 WILD-TYPE" "OR8K3 WILD-TYPE" "OR8K3 WILD-TYPE" "OR8K3 WILD-TYPE" 
     TCGA-50-5946      TCGA-50-6590      TCGA-50-6591      TCGA-50-6592 
"OR8K3 WILD-TYPE"   "OR8K3 MUTATED" "OR8K3 WILD-TYPE"   "OR8K3 MUTATED" 
     TCGA-50-6593      TCGA-50-6594      TCGA-50-6595      TCGA-50-6597 
"OR8K3 WILD-TYPE" "OR8K3 WILD-TYPE" "OR8K3 WILD-TYPE" "OR8K3 WILD-TYPE" 
     TCGA-55-1592      TCGA-55-1594      TCGA-55-1595      TCGA-55-1596 
"OR8K3 WILD-TYPE" "OR8K3 WILD-TYPE" "OR8K3 WILD-TYPE" "OR8K3 WILD-TYPE" 
     TCGA-55-5899      TCGA-55-6543      TCGA-55-6642      TCGA-55-6712 
"OR8K3 WILD-TYPE" "OR8K3 WILD-TYPE" "OR8K3 WILD-TYPE" "OR8K3 WILD-TYPE" 
     TCGA-64-1676      TCGA-64-1677      TCGA-64-1678      TCGA-64-1680 
"OR8K3 WILD-TYPE" "OR8K3 WILD-TYPE" "OR8K3 WILD-TYPE" "OR8K3 WILD-TYPE" 
     TCGA-64-5774      TCGA-64-5775      TCGA-64-5778      TCGA-64-5779 
"OR8K3 WILD-TYPE" "OR8K3 WILD-TYPE" "OR8K3 WILD-TYPE" "OR8K3 WILD-TYPE" 
     TCGA-64-5781      TCGA-64-5815      TCGA-67-3770      TCGA-67-3771 
  "OR8K3 MUTATED" "OR8K3 WILD-TYPE" "OR8K3 WILD-TYPE" "OR8K3 WILD-TYPE" 
     TCGA-67-3772      TCGA-67-3773      TCGA-67-3774      TCGA-67-6215 
"OR8K3 WILD-TYPE" "OR8K3 WILD-TYPE" "OR8K3 WILD-TYPE" "OR8K3 WILD-TYPE" 
     TCGA-67-6216      TCGA-67-6217      TCGA-71-6725      TCGA-73-4658 
"OR8K3 WILD-TYPE"   "OR8K3 MUTATED" "OR8K3 WILD-TYPE" "OR8K3 WILD-TYPE" 
     TCGA-73-4659      TCGA-73-4662      TCGA-73-4666      TCGA-73-4668 
"OR8K3 WILD-TYPE" "OR8K3 WILD-TYPE" "OR8K3 WILD-TYPE" "OR8K3 WILD-TYPE" 
     TCGA-73-4670      TCGA-73-4675      TCGA-73-4676      TCGA-73-4677 
"OR8K3 WILD-TYPE" "OR8K3 WILD-TYPE" "OR8K3 WILD-TYPE" "OR8K3 WILD-TYPE" 
     TCGA-91-6828      TCGA-91-6829      TCGA-91-6831      TCGA-91-6835 
"OR8K3 WILD-TYPE" "OR8K3 WILD-TYPE" "OR8K3 WILD-TYPE" "OR8K3 WILD-TYPE" 
     TCGA-91-6836 
"OR8K3 WILD-TYPE" 
     TCGA-05-4249      TCGA-05-4250      TCGA-05-4382      TCGA-05-4384 
"OR8K3 WILD-TYPE" "OR8K3 WILD-TYPE" "OR8K3 WILD-TYPE" "OR8K3 WILD-TYPE" 
     TCGA-05-4390      TCGA-05-4396      TCGA-05-4397      TCGA-05-4398 
"OR8K3 WILD-TYPE"   "OR8K3 MUTATED" "OR8K3 WILD-TYPE" "OR8K3 WILD-TYPE" 
     TCGA-05-4402      TCGA-05-4405      TCGA-05-4415      TCGA-05-4417 
"OR8K3 WILD-TYPE" "OR8K3 WILD-TYPE" "OR8K3 WILD-TYPE" "OR8K3 WILD-TYPE" 
     TCGA-05-4418      TCGA-05-4420      TCGA-05-4424      TCGA-05-4426 
"OR8K3 WILD-TYPE" "OR8K3 WILD-TYPE" "OR8K3 WILD-TYPE" "OR8K3 WILD-TYPE" 
     TCGA-05-4427      TCGA-05-4430      TCGA-05-4432      TCGA-05-4433 
"OR8K3 WILD-TYPE" "OR8K3 WILD-TYPE" "OR8K3 WILD-TYPE" "OR8K3 WILD-TYPE" 
     TCGA-05-4434      TCGA-05-5420      TCGA-05-5423      TCGA-05-5425 
"OR8K3 WILD-TYPE" "OR8K3 WILD-TYPE" "OR8K3 WILD-TYPE" "OR8K3 WILD-TYPE" 
     TCGA-05-5429      TCGA-05-5715      TCGA-35-3615      TCGA-35-4122 
"OR8K3 WILD-TYPE" "OR8K3 WILD-TYPE" "OR8K3 WILD-TYPE" "OR8K3 WILD-TYPE" 
     TCGA-35-4123      TCGA-35-5375      TCGA-38-4625      TCGA-38-4626 
"OR8K3 WILD-TYPE" "OR8K3 WILD-TYPE" "OR8K3 WILD-TYPE" "OR8K3 WILD-TYPE" 
     TCGA-38-4627      TCGA-38-4628      TCGA-38-4629      TCGA-38-4630 
"OR8K3 WILD-TYPE" "OR8K3 WILD-TYPE" "OR8K3 WILD-TYPE" "OR8K3 WILD-TYPE" 
     TCGA-38-4631      TCGA-38-4632      TCGA-38-6178      TCGA-44-2655 
"OR8K3 WILD-TYPE" "OR8K3 WILD-TYPE" "OR8K3 WILD-TYPE" "OR8K3 WILD-TYPE" 
     TCGA-44-2656      TCGA-44-2657      TCGA-44-2659      TCGA-44-2661 
"OR8K3 WILD-TYPE" "OR8K3 WILD-TYPE" "OR8K3 WILD-TYPE" "OR8K3 WILD-TYPE" 
     TCGA-44-2662      TCGA-44-2665      TCGA-44-2666      TCGA-44-2668 
"OR8K3 WILD-TYPE" "OR8K3 WILD-TYPE" "OR8K3 WILD-TYPE" "OR8K3 WILD-TYPE" 
     TCGA-44-3396      TCGA-44-3398      TCGA-44-3918      TCGA-44-3919 
"OR8K3 WILD-TYPE" "OR8K3 WILD-TYPE" "OR8K3 WILD-TYPE" "OR8K3 WILD-TYPE" 
     TCGA-44-4112      TCGA-44-5643      TCGA-44-5645      TCGA-44-6144 
"OR8K3 WILD-TYPE" "OR8K3 WILD-TYPE" "OR8K3 WILD-TYPE" "OR8K3 WILD-TYPE" 
     TCGA-44-6145      TCGA-44-6146      TCGA-44-6147      TCGA-44-6148 
"OR8K3 WILD-TYPE" "OR8K3 WILD-TYPE" "OR8K3 WILD-TYPE" "OR8K3 WILD-TYPE" 
     TCGA-44-6774      TCGA-44-6775      TCGA-44-6776      TCGA-44-6777 
"OR8K3 WILD-TYPE" "OR8K3 WILD-TYPE" "OR8K3 WILD-TYPE" "OR8K3 WILD-TYPE" 
     TCGA-44-6778      TCGA-44-6779      TCGA-49-4486      TCGA-49-4487 
"OR8K3 WILD-TYPE" "OR8K3 WILD-TYPE" "OR8K3 WILD-TYPE" "OR8K3 WILD-TYPE" 
     TCGA-49-4488      TCGA-49-4490      TCGA-49-4494      TCGA-49-4501 
"OR8K3 WILD-TYPE" "OR8K3 WILD-TYPE" "OR8K3 WILD-TYPE" "OR8K3 WILD-TYPE" 
     TCGA-49-4505      TCGA-49-4506      TCGA-49-4507      TCGA-49-4510 
"OR8K3 WILD-TYPE" "OR8K3 WILD-TYPE" "OR8K3 WILD-TYPE" "OR8K3 WILD-TYPE" 
     TCGA-49-4512      TCGA-49-4514      TCGA-49-6742      TCGA-49-6743 
"OR8K3 WILD-TYPE" "OR8K3 WILD-TYPE" "OR8K3 WILD-TYPE" "OR8K3 WILD-TYPE" 
     TCGA-49-6744      TCGA-49-6745      TCGA-50-5044      TCGA-50-5045 
"OR8K3 WILD-TYPE" "OR8K3 WILD-TYPE" "OR8K3 WILD-TYPE" "OR8K3 WILD-TYPE" 
     TCGA-50-5049      TCGA-50-5051      TCGA-50-5055      TCGA-50-5066 
"OR8K3 WILD-TYPE" "OR8K3 WILD-TYPE" "OR8K3 WILD-TYPE" "OR8K3 WILD-TYPE" 
     TCGA-50-5068      TCGA-50-5072      TCGA-50-5930      TCGA-50-5931 
"OR8K3 WILD-TYPE" "OR8K3 WILD-TYPE" "OR8K3 WILD-TYPE" "OR8K3 WILD-TYPE" 
     TCGA-50-5932      TCGA-50-5933      TCGA-50-5935      TCGA-50-5936 
"OR8K3 WILD-TYPE" "OR8K3 WILD-TYPE" "OR8K3 WILD-TYPE" "OR8K3 WILD-TYPE" 
     TCGA-50-5939      TCGA-50-5941      TCGA-50-5942      TCGA-50-5944 
"OR8K3 WILD-TYPE" "OR8K3 WILD-TYPE" "OR8K3 WILD-TYPE" "OR8K3 WILD-TYPE" 
     TCGA-50-5946      TCGA-50-6590      TCGA-50-6591      TCGA-50-6592 
"OR8K3 WILD-TYPE"   "OR8K3 MUTATED" "OR8K3 WILD-TYPE"   "OR8K3 MUTATED" 
     TCGA-50-6593      TCGA-50-6594      TCGA-50-6595      TCGA-50-6597 
"OR8K3 WILD-TYPE" "OR8K3 WILD-TYPE" "OR8K3 WILD-TYPE" "OR8K3 WILD-TYPE" 
     TCGA-55-1592      TCGA-55-1594      TCGA-55-1595      TCGA-55-1596 
"OR8K3 WILD-TYPE" "OR8K3 WILD-TYPE" "OR8K3 WILD-TYPE" "OR8K3 WILD-TYPE" 
     TCGA-55-5899      TCGA-55-6543      TCGA-55-6642      TCGA-55-6712 
"OR8K3 WILD-TYPE" "OR8K3 WILD-TYPE" "OR8K3 WILD-TYPE" "OR8K3 WILD-TYPE" 
     TCGA-64-1676      TCGA-64-1677      TCGA-64-1678      TCGA-64-1680 
"OR8K3 WILD-TYPE" "OR8K3 WILD-TYPE" "OR8K3 WILD-TYPE" "OR8K3 WILD-TYPE" 
     TCGA-64-5774      TCGA-64-5775      TCGA-64-5778      TCGA-64-5779 
"OR8K3 WILD-TYPE" "OR8K3 WILD-TYPE" "OR8K3 WILD-TYPE" "OR8K3 WILD-TYPE" 
     TCGA-64-5781      TCGA-64-5815      TCGA-67-3770      TCGA-67-3771 
  "OR8K3 MUTATED" "OR8K3 WILD-TYPE" "OR8K3 WILD-TYPE" "OR8K3 WILD-TYPE" 
     TCGA-67-3772      TCGA-67-3773      TCGA-67-3774      TCGA-67-6215 
"OR8K3 WILD-TYPE" "OR8K3 WILD-TYPE" "OR8K3 WILD-TYPE" "OR8K3 WILD-TYPE" 
     TCGA-67-6216      TCGA-67-6217      TCGA-71-6725      TCGA-73-4658 
"OR8K3 WILD-TYPE"   "OR8K3 MUTATED" "OR8K3 WILD-TYPE" "OR8K3 WILD-TYPE" 
     TCGA-73-4659      TCGA-73-4662      TCGA-73-4666      TCGA-73-4668 
"OR8K3 WILD-TYPE" "OR8K3 WILD-TYPE" "OR8K3 WILD-TYPE" "OR8K3 WILD-TYPE" 
     TCGA-73-4670      TCGA-73-4675      TCGA-73-4676      TCGA-73-4677 
"OR8K3 WILD-TYPE" "OR8K3 WILD-TYPE" "OR8K3 WILD-TYPE" "OR8K3 WILD-TYPE" 
     TCGA-91-6828      TCGA-91-6829      TCGA-91-6831      TCGA-91-6835 
"OR8K3 WILD-TYPE" "OR8K3 WILD-TYPE" "OR8K3 WILD-TYPE" "OR8K3 WILD-TYPE" 
     TCGA-91-6836 
"OR8K3 WILD-TYPE" 
     TCGA-05-4249      TCGA-05-4250      TCGA-05-4382      TCGA-05-4384 
"OR8K3 WILD-TYPE" "OR8K3 WILD-TYPE" "OR8K3 WILD-TYPE" "OR8K3 WILD-TYPE" 
     TCGA-05-4390      TCGA-05-4396      TCGA-05-4397      TCGA-05-4398 
"OR8K3 WILD-TYPE"   "OR8K3 MUTATED" "OR8K3 WILD-TYPE" "OR8K3 WILD-TYPE" 
     TCGA-05-4402      TCGA-05-4405      TCGA-05-4415      TCGA-05-4417 
"OR8K3 WILD-TYPE" "OR8K3 WILD-TYPE" "OR8K3 WILD-TYPE" "OR8K3 WILD-TYPE" 
     TCGA-05-4418      TCGA-05-4420      TCGA-05-4424      TCGA-05-4426 
"OR8K3 WILD-TYPE" "OR8K3 WILD-TYPE" "OR8K3 WILD-TYPE" "OR8K3 WILD-TYPE" 
     TCGA-05-4427      TCGA-05-4430      TCGA-05-4432      TCGA-05-4433 
"OR8K3 WILD-TYPE" "OR8K3 WILD-TYPE" "OR8K3 WILD-TYPE" "OR8K3 WILD-TYPE" 
     TCGA-05-4434      TCGA-05-5420      TCGA-05-5423      TCGA-05-5425 
"OR8K3 WILD-TYPE" "OR8K3 WILD-TYPE" "OR8K3 WILD-TYPE" "OR8K3 WILD-TYPE" 
     TCGA-05-5429      TCGA-05-5715      TCGA-35-3615      TCGA-35-4122 
"OR8K3 WILD-TYPE" "OR8K3 WILD-TYPE" "OR8K3 WILD-TYPE" "OR8K3 WILD-TYPE" 
     TCGA-35-4123      TCGA-35-5375      TCGA-38-4625      TCGA-38-4626 
"OR8K3 WILD-TYPE" "OR8K3 WILD-TYPE" "OR8K3 WILD-TYPE" "OR8K3 WILD-TYPE" 
     TCGA-38-4627      TCGA-38-4628      TCGA-38-4629      TCGA-38-4630 
"OR8K3 WILD-TYPE" "OR8K3 WILD-TYPE" "OR8K3 WILD-TYPE" "OR8K3 WILD-TYPE" 
     TCGA-38-4631      TCGA-38-4632      TCGA-38-6178      TCGA-44-2655 
"OR8K3 WILD-TYPE" "OR8K3 WILD-TYPE" "OR8K3 WILD-TYPE" "OR8K3 WILD-TYPE" 
     TCGA-44-2656      TCGA-44-2657      TCGA-44-2659      TCGA-44-2661 
"OR8K3 WILD-TYPE" "OR8K3 WILD-TYPE" "OR8K3 WILD-TYPE" "OR8K3 WILD-TYPE" 
     TCGA-44-2662      TCGA-44-2665      TCGA-44-2666      TCGA-44-2668 
"OR8K3 WILD-TYPE" "OR8K3 WILD-TYPE" "OR8K3 WILD-TYPE" "OR8K3 WILD-TYPE" 
     TCGA-44-3396      TCGA-44-3398      TCGA-44-3918      TCGA-44-3919 
"OR8K3 WILD-TYPE" "OR8K3 WILD-TYPE" "OR8K3 WILD-TYPE" "OR8K3 WILD-TYPE" 
     TCGA-44-4112      TCGA-44-5643      TCGA-44-5645      TCGA-44-6144 
"OR8K3 WILD-TYPE" "OR8K3 WILD-TYPE" "OR8K3 WILD-TYPE" "OR8K3 WILD-TYPE" 
     TCGA-44-6145      TCGA-44-6146      TCGA-44-6147      TCGA-44-6148 
"OR8K3 WILD-TYPE" "OR8K3 WILD-TYPE" "OR8K3 WILD-TYPE" "OR8K3 WILD-TYPE" 
     TCGA-44-6774      TCGA-44-6775      TCGA-44-6776      TCGA-44-6777 
"OR8K3 WILD-TYPE" "OR8K3 WILD-TYPE" "OR8K3 WILD-TYPE" "OR8K3 WILD-TYPE" 
     TCGA-44-6778      TCGA-44-6779      TCGA-49-4486      TCGA-49-4487 
"OR8K3 WILD-TYPE" "OR8K3 WILD-TYPE" "OR8K3 WILD-TYPE" "OR8K3 WILD-TYPE" 
     TCGA-49-4488      TCGA-49-4490      TCGA-49-4494      TCGA-49-4501 
"OR8K3 WILD-TYPE" "OR8K3 WILD-TYPE" "OR8K3 WILD-TYPE" "OR8K3 WILD-TYPE" 
     TCGA-49-4505      TCGA-49-4506      TCGA-49-4507      TCGA-49-4510 
"OR8K3 WILD-TYPE" "OR8K3 WILD-TYPE" "OR8K3 WILD-TYPE" "OR8K3 WILD-TYPE" 
     TCGA-49-4512      TCGA-49-4514      TCGA-49-6742      TCGA-49-6743 
"OR8K3 WILD-TYPE" "OR8K3 WILD-TYPE" "OR8K3 WILD-TYPE" "OR8K3 WILD-TYPE" 
     TCGA-49-6744      TCGA-49-6745      TCGA-50-5044      TCGA-50-5045 
"OR8K3 WILD-TYPE" "OR8K3 WILD-TYPE" "OR8K3 WILD-TYPE" "OR8K3 WILD-TYPE" 
     TCGA-50-5049      TCGA-50-5051      TCGA-50-5055      TCGA-50-5066 
"OR8K3 WILD-TYPE" "OR8K3 WILD-TYPE" "OR8K3 WILD-TYPE" "OR8K3 WILD-TYPE" 
     TCGA-50-5068      TCGA-50-5072      TCGA-50-5930      TCGA-50-5931 
"OR8K3 WILD-TYPE" "OR8K3 WILD-TYPE" "OR8K3 WILD-TYPE" "OR8K3 WILD-TYPE" 
     TCGA-50-5932      TCGA-50-5933      TCGA-50-5935      TCGA-50-5936 
"OR8K3 WILD-TYPE" "OR8K3 WILD-TYPE" "OR8K3 WILD-TYPE" "OR8K3 WILD-TYPE" 
     TCGA-50-5939      TCGA-50-5941      TCGA-50-5942      TCGA-50-5944 
"OR8K3 WILD-TYPE" "OR8K3 WILD-TYPE" "OR8K3 WILD-TYPE" "OR8K3 WILD-TYPE" 
     TCGA-50-5946      TCGA-50-6590      TCGA-50-6591      TCGA-50-6592 
"OR8K3 WILD-TYPE"   "OR8K3 MUTATED" "OR8K3 WILD-TYPE"   "OR8K3 MUTATED" 
     TCGA-50-6593      TCGA-50-6594      TCGA-50-6595      TCGA-50-6597 
"OR8K3 WILD-TYPE" "OR8K3 WILD-TYPE" "OR8K3 WILD-TYPE" "OR8K3 WILD-TYPE" 
     TCGA-55-1592      TCGA-55-1594      TCGA-55-1595      TCGA-55-1596 
"OR8K3 WILD-TYPE" "OR8K3 WILD-TYPE" "OR8K3 WILD-TYPE" "OR8K3 WILD-TYPE" 
     TCGA-55-5899      TCGA-55-6543      TCGA-55-6642      TCGA-55-6712 
"OR8K3 WILD-TYPE" "OR8K3 WILD-TYPE" "OR8K3 WILD-TYPE" "OR8K3 WILD-TYPE" 
     TCGA-64-1676      TCGA-64-1677      TCGA-64-1678      TCGA-64-1680 
"OR8K3 WILD-TYPE" "OR8K3 WILD-TYPE" "OR8K3 WILD-TYPE" "OR8K3 WILD-TYPE" 
     TCGA-64-5774      TCGA-64-5775      TCGA-64-5778      TCGA-64-5779 
"OR8K3 WILD-TYPE" "OR8K3 WILD-TYPE" "OR8K3 WILD-TYPE" "OR8K3 WILD-TYPE" 
     TCGA-64-5781      TCGA-64-5815      TCGA-67-3770      TCGA-67-3771 
  "OR8K3 MUTATED" "OR8K3 WILD-TYPE" "OR8K3 WILD-TYPE" "OR8K3 WILD-TYPE" 
     TCGA-67-3772      TCGA-67-3773      TCGA-67-3774      TCGA-67-6215 
"OR8K3 WILD-TYPE" "OR8K3 WILD-TYPE" "OR8K3 WILD-TYPE" "OR8K3 WILD-TYPE" 
     TCGA-67-6216      TCGA-67-6217      TCGA-71-6725      TCGA-73-4658 
"OR8K3 WILD-TYPE"   "OR8K3 MUTATED" "OR8K3 WILD-TYPE" "OR8K3 WILD-TYPE" 
     TCGA-73-4659      TCGA-73-4662      TCGA-73-4666      TCGA-73-4668 
"OR8K3 WILD-TYPE" "OR8K3 WILD-TYPE" "OR8K3 WILD-TYPE" "OR8K3 WILD-TYPE" 
     TCGA-73-4670      TCGA-73-4675      TCGA-73-4676      TCGA-73-4677 
"OR8K3 WILD-TYPE" "OR8K3 WILD-TYPE" "OR8K3 WILD-TYPE" "OR8K3 WILD-TYPE" 
     TCGA-91-6828      TCGA-91-6829      TCGA-91-6831      TCGA-91-6835 
"OR8K3 WILD-TYPE" "OR8K3 WILD-TYPE" "OR8K3 WILD-TYPE" "OR8K3 WILD-TYPE" 
     TCGA-91-6836 
"OR8K3 WILD-TYPE" 
[1] "hr=" "1.4"
D157V2, continuous
D157V3, binary
[1] "tbl2"
                 cls
clus              [,1] [,2]
  OR8K3 MUTATED      4    1
  OR8K3 WILD-TYPE   89   78
        clus
vv       OR8K3 MUTATED OR8K3 WILD-TYPE
  FEMALE             4              89
  MALE               1              78
D157V4, continuous
D157V5, multiclass
D157V6, multiclass
    clus
vv   OR8K3 MUTATED OR8K3 WILD-TYPE
  T1             0              41
  T2             4             104
  T3             0              14
  T4             1               7
D157V7, multiclass
       clus
vv      OR8K3 MUTATED OR8K3 WILD-TYPE
  N0                3              92
  N1                2              35
  N2+N3             0              35
D157V8, multiclass
    clus
vv   OR8K3 MUTATED OR8K3 WILD-TYPE
  M0             5             132
  M1             0               9
  MX             0              22
D157V9, multiclass
     clus
vv    OR8K3 MUTATED OR8K3 WILD-TYPE
  I               3              85
  II              1              32
  III             1              38
  IV              0               9
D157V10, binary
[1] "tbl2"
                 cls
clus              [,1] [,2]
  OR8K3 MUTATED      0    5
  OR8K3 WILD-TYPE   16  151
     clus
vv    OR8K3 MUTATED OR8K3 WILD-TYPE
  NO              0              16
  YES             5             151
D157V11, continuous
D157V12, continuous
D157V13, multiclass
                                             clus
vv                                            OR8K3 MUTATED OR8K3 WILD-TYPE
  CURRENT REFORMED SMOKER FOR < OR = 15 YEARS             3              59
  CURRENT REFORMED SMOKER FOR > 15 YEARS                  2              44
  CURRENT SMOKER                                          0              28
  LIFELONG NON-SMOKER                                     0              24
D157V14, continuous
[1] "Remove cluster labels:" "OR8K3 MUTATED"         
clus
  OR8K3 MUTATED OR8K3 WILD-TYPE 
              2              66 
     TCGA-05-4384      TCGA-05-4390      TCGA-05-4405      TCGA-05-4410 
"OR8K3 WILD-TYPE" "OR8K3 WILD-TYPE" "OR8K3 WILD-TYPE" "OR8K3 WILD-TYPE" 
     TCGA-05-4415      TCGA-05-4417      TCGA-05-4424      TCGA-05-4427 
"OR8K3 WILD-TYPE" "OR8K3 WILD-TYPE" "OR8K3 WILD-TYPE" "OR8K3 WILD-TYPE" 
     TCGA-05-4433      TCGA-05-5420      TCGA-05-5423      TCGA-05-5425 
"OR8K3 WILD-TYPE" "OR8K3 WILD-TYPE" "OR8K3 WILD-TYPE" "OR8K3 WILD-TYPE" 
     TCGA-05-5428      TCGA-35-4122      TCGA-35-4123      TCGA-35-5375 
"OR8K3 WILD-TYPE" "OR8K3 WILD-TYPE" "OR8K3 WILD-TYPE" "OR8K3 WILD-TYPE" 
     TCGA-38-4625      TCGA-38-4626      TCGA-44-2655      TCGA-44-2656 
"OR8K3 WILD-TYPE" "OR8K3 WILD-TYPE" "OR8K3 WILD-TYPE" "OR8K3 WILD-TYPE" 
     TCGA-44-2657      TCGA-44-2659      TCGA-44-2662      TCGA-44-2666 
"OR8K3 WILD-TYPE" "OR8K3 WILD-TYPE" "OR8K3 WILD-TYPE" "OR8K3 WILD-TYPE" 
     TCGA-44-2668      TCGA-44-3396      TCGA-44-3398      TCGA-44-3918 
"OR8K3 WILD-TYPE" "OR8K3 WILD-TYPE" "OR8K3 WILD-TYPE" "OR8K3 WILD-TYPE" 
     TCGA-44-4112      TCGA-44-5645      TCGA-44-6144      TCGA-44-6145 
"OR8K3 WILD-TYPE" "OR8K3 WILD-TYPE" "OR8K3 WILD-TYPE" "OR8K3 WILD-TYPE" 
     TCGA-44-6147      TCGA-44-6148      TCGA-44-6774      TCGA-44-6775 
"OR8K3 WILD-TYPE" "OR8K3 WILD-TYPE" "OR8K3 WILD-TYPE" "OR8K3 WILD-TYPE" 
     TCGA-44-6776      TCGA-44-6777      TCGA-44-6778      TCGA-44-6779 
"OR8K3 WILD-TYPE" "OR8K3 WILD-TYPE" "OR8K3 WILD-TYPE" "OR8K3 WILD-TYPE" 
     TCGA-49-4486      TCGA-49-4494      TCGA-49-4505      TCGA-55-1592 
"OR8K3 WILD-TYPE" "OR8K3 WILD-TYPE" "OR8K3 WILD-TYPE" "OR8K3 WILD-TYPE" 
     TCGA-55-1594      TCGA-55-1595      TCGA-55-1596      TCGA-55-5899 
"OR8K3 WILD-TYPE" "OR8K3 WILD-TYPE" "OR8K3 WILD-TYPE" "OR8K3 WILD-TYPE" 
     TCGA-55-6642      TCGA-55-6712      TCGA-64-1677      TCGA-64-1678 
"OR8K3 WILD-TYPE" "OR8K3 WILD-TYPE" "OR8K3 WILD-TYPE" "OR8K3 WILD-TYPE" 
     TCGA-64-1680      TCGA-64-5774      TCGA-64-5775      TCGA-64-5778 
"OR8K3 WILD-TYPE" "OR8K3 WILD-TYPE" "OR8K3 WILD-TYPE" "OR8K3 WILD-TYPE" 
     TCGA-64-5779      TCGA-73-4659      TCGA-73-4662      TCGA-73-4666 
"OR8K3 WILD-TYPE" "OR8K3 WILD-TYPE" "OR8K3 WILD-TYPE" "OR8K3 WILD-TYPE" 
     TCGA-73-4668      TCGA-73-4670      TCGA-73-4675      TCGA-73-4676 
"OR8K3 WILD-TYPE" "OR8K3 WILD-TYPE" "OR8K3 WILD-TYPE" "OR8K3 WILD-TYPE" 
     TCGA-91-6829      TCGA-91-6836 
"OR8K3 WILD-TYPE" "OR8K3 WILD-TYPE" 

Clustering(158) Variable = FSTL5 MUTATION ANALYSIS
D158V1, survival
                 sevent
clus2              0  1
  FSTL5 MUTATED   10  3
  FSTL5 WILD-TYPE 89 47
  FSTL5 MUTATED FSTL5 WILD-TYPE 
             13             136 
  FSTL5 MUTATED FSTL5 WILD-TYPE 
              3              47 
$`FSTL5 MUTATED`
TCGA-05-4382 TCGA-05-4390 TCGA-05-4396 TCGA-05-4398 TCGA-38-6178 TCGA-44-3918 
       19.92        37.02         9.96        47.05         5.19         6.44 
TCGA-44-6147 TCGA-44-6774 TCGA-44-6777 TCGA-73-4658 TCGA-73-4666 TCGA-73-4668 
        7.76         5.42        32.45        52.57        20.28        15.35 
TCGA-91-6836 
        0.36 

$`FSTL5 WILD-TYPE`
TCGA-05-4249 TCGA-05-4250 TCGA-05-4384 TCGA-05-4397 TCGA-05-4402 TCGA-05-4405 
       38.07         3.98        14.01        24.03         8.02        20.05 
TCGA-05-4415 TCGA-05-4417 TCGA-05-4418 TCGA-05-4420 TCGA-05-4424 TCGA-05-4426 
        2.96        14.93         8.98        29.95        30.02        26.01 
TCGA-05-4427 TCGA-05-4430 TCGA-05-4432 TCGA-05-4433 TCGA-05-4434 TCGA-05-5420 
       26.01        25.02        25.02        24.00        15.02         1.02 
TCGA-05-5423 TCGA-05-5425 TCGA-05-5429 TCGA-05-5715 TCGA-35-3615 TCGA-35-4122 
        4.96         2.96         0.99         2.04         0.46         7.36 
TCGA-35-4123 TCGA-35-5375 TCGA-38-4625 TCGA-38-4626 TCGA-38-4627 TCGA-38-4628 
        5.95         8.68        47.61        85.32        37.71        49.02 
TCGA-38-4629 TCGA-38-4630 TCGA-38-4631 TCGA-38-4632 TCGA-44-2655 TCGA-44-2656 
       28.37        35.28        11.64        44.61        18.87        19.10 
TCGA-44-2657 TCGA-44-2659 TCGA-44-2661 TCGA-44-2662 TCGA-44-2665 TCGA-44-2666 
       13.15        17.39         3.39        15.78        13.15         3.19 
TCGA-44-2668 TCGA-44-3396 TCGA-44-3398 TCGA-44-3919 TCGA-44-4112 TCGA-44-5643 
        8.09        10.22         8.32         6.21         4.60         3.48 
TCGA-44-5645 TCGA-44-6144 TCGA-44-6145 TCGA-44-6146 TCGA-44-6148 TCGA-44-6775 
        6.84         0.30         3.35         9.93         3.12         2.70 
TCGA-44-6776 TCGA-44-6778 TCGA-44-6779 TCGA-49-4486 TCGA-49-4487 TCGA-49-4488 
       63.72        36.49        16.41        76.21        28.11        28.57 
TCGA-49-4490 TCGA-49-4494 TCGA-49-4501 TCGA-49-4505 TCGA-49-4506 TCGA-49-4507 
       12.66        35.54        46.72        14.07        32.84         8.81 
TCGA-49-4510 TCGA-49-4512 TCGA-49-4514 TCGA-49-6742 TCGA-49-6743 TCGA-49-6744 
       29.46        29.75        43.20        15.02        12.13        12.99 
TCGA-49-6745 TCGA-50-5044 TCGA-50-5045 TCGA-50-5049 TCGA-50-5051 TCGA-50-5055 
        4.93        20.48        71.47        48.82        14.96        25.81 
TCGA-50-5066 TCGA-50-5068 TCGA-50-5072 TCGA-50-5930 TCGA-50-5931 TCGA-50-5932 
        9.76        49.28         8.05         9.27         8.78        35.87 
TCGA-50-5933 TCGA-50-5935 TCGA-50-5936 TCGA-50-5939 TCGA-50-5941 TCGA-50-5942 
       77.88        21.47         8.45        15.12         9.37         4.44 
TCGA-50-5944 TCGA-50-5946 TCGA-50-6590 TCGA-50-6591 TCGA-50-6592 TCGA-50-6593 
       12.26        11.47        42.31         3.88        25.51        11.05 
TCGA-50-6594 TCGA-50-6595 TCGA-50-6597 TCGA-55-1592 TCGA-55-1594 TCGA-55-1595 
       12.16         6.21        33.37        23.05        38.73        48.62 
TCGA-55-1596 TCGA-55-5899 TCGA-55-6543 TCGA-55-6642 TCGA-55-6712 TCGA-64-1676 
       45.17         2.86         0.07        32.61         0.79        56.81 
TCGA-64-1677 TCGA-64-1678 TCGA-64-1680 TCGA-64-5774 TCGA-64-5775 TCGA-64-5778 
       20.65        39.09        37.02        83.84         0.10        30.44 
TCGA-64-5779 TCGA-64-5781 TCGA-64-5815 TCGA-67-3770 TCGA-67-3771 TCGA-67-3772 
       16.67        39.52         7.33         0.99         1.97         0.59 
TCGA-67-3773 TCGA-67-3774 TCGA-67-6215 TCGA-67-6216 TCGA-67-6217 TCGA-71-6725 
        2.04         0.59         0.89         0.69        13.87         2.01 
TCGA-73-4659 TCGA-73-4662 TCGA-73-4670 TCGA-73-4675 TCGA-73-4676 TCGA-73-4677 
       23.38        29.95         0.46         1.32         4.01         1.25 
TCGA-91-6828 TCGA-91-6829 TCGA-91-6831 TCGA-91-6835 
        1.22        41.33         1.28         1.15 

  FSTL5 MUTATED FSTL5 WILD-TYPE 
           0.36            0.07 
  FSTL5 MUTATED FSTL5 WILD-TYPE 
          52.57           85.32 
  FSTL5 MUTATED FSTL5 WILD-TYPE 
          15.35           13.51 
[1] "0.4 - 52.6 (15.3)" "0.1 - 85.3 (13.5)"
     TCGA-05-4249      TCGA-05-4250      TCGA-05-4382      TCGA-05-4384 
"FSTL5 WILD-TYPE" "FSTL5 WILD-TYPE"   "FSTL5 MUTATED" "FSTL5 WILD-TYPE" 
     TCGA-05-4390      TCGA-05-4396      TCGA-05-4397      TCGA-05-4398 
  "FSTL5 MUTATED"   "FSTL5 MUTATED" "FSTL5 WILD-TYPE"   "FSTL5 MUTATED" 
     TCGA-05-4402      TCGA-05-4405      TCGA-05-4415      TCGA-05-4417 
"FSTL5 WILD-TYPE" "FSTL5 WILD-TYPE" "FSTL5 WILD-TYPE" "FSTL5 WILD-TYPE" 
     TCGA-05-4418      TCGA-05-4420      TCGA-05-4424      TCGA-05-4426 
"FSTL5 WILD-TYPE" "FSTL5 WILD-TYPE" "FSTL5 WILD-TYPE" "FSTL5 WILD-TYPE" 
     TCGA-05-4427      TCGA-05-4430      TCGA-05-4432      TCGA-05-4433 
"FSTL5 WILD-TYPE" "FSTL5 WILD-TYPE" "FSTL5 WILD-TYPE" "FSTL5 WILD-TYPE" 
     TCGA-05-4434      TCGA-05-5420      TCGA-05-5423      TCGA-05-5425 
"FSTL5 WILD-TYPE" "FSTL5 WILD-TYPE" "FSTL5 WILD-TYPE" "FSTL5 WILD-TYPE" 
     TCGA-05-5429      TCGA-05-5715      TCGA-35-3615      TCGA-35-4122 
"FSTL5 WILD-TYPE" "FSTL5 WILD-TYPE" "FSTL5 WILD-TYPE" "FSTL5 WILD-TYPE" 
     TCGA-35-4123      TCGA-35-5375      TCGA-38-4625      TCGA-38-4626 
"FSTL5 WILD-TYPE" "FSTL5 WILD-TYPE" "FSTL5 WILD-TYPE" "FSTL5 WILD-TYPE" 
     TCGA-38-4627      TCGA-38-4628      TCGA-38-4629      TCGA-38-4630 
"FSTL5 WILD-TYPE" "FSTL5 WILD-TYPE" "FSTL5 WILD-TYPE" "FSTL5 WILD-TYPE" 
     TCGA-38-4631      TCGA-38-4632      TCGA-38-6178      TCGA-44-2655 
"FSTL5 WILD-TYPE" "FSTL5 WILD-TYPE"   "FSTL5 MUTATED" "FSTL5 WILD-TYPE" 
     TCGA-44-2656      TCGA-44-2657      TCGA-44-2659      TCGA-44-2661 
"FSTL5 WILD-TYPE" "FSTL5 WILD-TYPE" "FSTL5 WILD-TYPE" "FSTL5 WILD-TYPE" 
     TCGA-44-2662      TCGA-44-2665      TCGA-44-2666      TCGA-44-2668 
"FSTL5 WILD-TYPE" "FSTL5 WILD-TYPE" "FSTL5 WILD-TYPE" "FSTL5 WILD-TYPE" 
     TCGA-44-3396      TCGA-44-3398      TCGA-44-3918      TCGA-44-3919 
"FSTL5 WILD-TYPE" "FSTL5 WILD-TYPE"   "FSTL5 MUTATED" "FSTL5 WILD-TYPE" 
     TCGA-44-4112      TCGA-44-5643      TCGA-44-5645      TCGA-44-6144 
"FSTL5 WILD-TYPE" "FSTL5 WILD-TYPE" "FSTL5 WILD-TYPE" "FSTL5 WILD-TYPE" 
     TCGA-44-6145      TCGA-44-6146      TCGA-44-6147      TCGA-44-6148 
"FSTL5 WILD-TYPE" "FSTL5 WILD-TYPE"   "FSTL5 MUTATED" "FSTL5 WILD-TYPE" 
     TCGA-44-6774      TCGA-44-6775      TCGA-44-6776      TCGA-44-6777 
  "FSTL5 MUTATED" "FSTL5 WILD-TYPE" "FSTL5 WILD-TYPE"   "FSTL5 MUTATED" 
     TCGA-44-6778      TCGA-44-6779      TCGA-49-4486      TCGA-49-4487 
"FSTL5 WILD-TYPE" "FSTL5 WILD-TYPE" "FSTL5 WILD-TYPE" "FSTL5 WILD-TYPE" 
     TCGA-49-4488      TCGA-49-4490      TCGA-49-4494      TCGA-49-4501 
"FSTL5 WILD-TYPE" "FSTL5 WILD-TYPE" "FSTL5 WILD-TYPE" "FSTL5 WILD-TYPE" 
     TCGA-49-4505      TCGA-49-4506      TCGA-49-4507      TCGA-49-4510 
"FSTL5 WILD-TYPE" "FSTL5 WILD-TYPE" "FSTL5 WILD-TYPE" "FSTL5 WILD-TYPE" 
     TCGA-49-4512      TCGA-49-4514      TCGA-49-6742      TCGA-49-6743 
"FSTL5 WILD-TYPE" "FSTL5 WILD-TYPE" "FSTL5 WILD-TYPE" "FSTL5 WILD-TYPE" 
     TCGA-49-6744      TCGA-49-6745      TCGA-50-5044      TCGA-50-5045 
"FSTL5 WILD-TYPE" "FSTL5 WILD-TYPE" "FSTL5 WILD-TYPE" "FSTL5 WILD-TYPE" 
     TCGA-50-5049      TCGA-50-5051      TCGA-50-5055      TCGA-50-5066 
"FSTL5 WILD-TYPE" "FSTL5 WILD-TYPE" "FSTL5 WILD-TYPE" "FSTL5 WILD-TYPE" 
     TCGA-50-5068      TCGA-50-5072      TCGA-50-5930      TCGA-50-5931 
"FSTL5 WILD-TYPE" "FSTL5 WILD-TYPE" "FSTL5 WILD-TYPE" "FSTL5 WILD-TYPE" 
     TCGA-50-5932      TCGA-50-5933      TCGA-50-5935      TCGA-50-5936 
"FSTL5 WILD-TYPE" "FSTL5 WILD-TYPE" "FSTL5 WILD-TYPE" "FSTL5 WILD-TYPE" 
     TCGA-50-5939      TCGA-50-5941      TCGA-50-5942      TCGA-50-5944 
"FSTL5 WILD-TYPE" "FSTL5 WILD-TYPE" "FSTL5 WILD-TYPE" "FSTL5 WILD-TYPE" 
     TCGA-50-5946      TCGA-50-6590      TCGA-50-6591      TCGA-50-6592 
"FSTL5 WILD-TYPE" "FSTL5 WILD-TYPE" "FSTL5 WILD-TYPE" "FSTL5 WILD-TYPE" 
     TCGA-50-6593      TCGA-50-6594      TCGA-50-6595      TCGA-50-6597 
"FSTL5 WILD-TYPE" "FSTL5 WILD-TYPE" "FSTL5 WILD-TYPE" "FSTL5 WILD-TYPE" 
     TCGA-55-1592      TCGA-55-1594      TCGA-55-1595      TCGA-55-1596 
"FSTL5 WILD-TYPE" "FSTL5 WILD-TYPE" "FSTL5 WILD-TYPE" "FSTL5 WILD-TYPE" 
     TCGA-55-5899      TCGA-55-6543      TCGA-55-6642      TCGA-55-6712 
"FSTL5 WILD-TYPE" "FSTL5 WILD-TYPE" "FSTL5 WILD-TYPE" "FSTL5 WILD-TYPE" 
     TCGA-64-1676      TCGA-64-1677      TCGA-64-1678      TCGA-64-1680 
"FSTL5 WILD-TYPE" "FSTL5 WILD-TYPE" "FSTL5 WILD-TYPE" "FSTL5 WILD-TYPE" 
     TCGA-64-5774      TCGA-64-5775      TCGA-64-5778      TCGA-64-5779 
"FSTL5 WILD-TYPE" "FSTL5 WILD-TYPE" "FSTL5 WILD-TYPE" "FSTL5 WILD-TYPE" 
     TCGA-64-5781      TCGA-64-5815      TCGA-67-3770      TCGA-67-3771 
"FSTL5 WILD-TYPE" "FSTL5 WILD-TYPE" "FSTL5 WILD-TYPE" "FSTL5 WILD-TYPE" 
     TCGA-67-3772      TCGA-67-3773      TCGA-67-3774      TCGA-67-6215 
"FSTL5 WILD-TYPE" "FSTL5 WILD-TYPE" "FSTL5 WILD-TYPE" "FSTL5 WILD-TYPE" 
     TCGA-67-6216      TCGA-67-6217      TCGA-71-6725      TCGA-73-4658 
"FSTL5 WILD-TYPE" "FSTL5 WILD-TYPE" "FSTL5 WILD-TYPE"   "FSTL5 MUTATED" 
     TCGA-73-4659      TCGA-73-4662      TCGA-73-4666      TCGA-73-4668 
"FSTL5 WILD-TYPE" "FSTL5 WILD-TYPE"   "FSTL5 MUTATED"   "FSTL5 MUTATED" 
     TCGA-73-4670      TCGA-73-4675      TCGA-73-4676      TCGA-73-4677 
"FSTL5 WILD-TYPE" "FSTL5 WILD-TYPE" "FSTL5 WILD-TYPE" "FSTL5 WILD-TYPE" 
     TCGA-91-6828      TCGA-91-6829      TCGA-91-6831      TCGA-91-6835 
"FSTL5 WILD-TYPE" "FSTL5 WILD-TYPE" "FSTL5 WILD-TYPE" "FSTL5 WILD-TYPE" 
     TCGA-91-6836 
  "FSTL5 MUTATED" 
     TCGA-05-4249      TCGA-05-4250      TCGA-05-4382      TCGA-05-4384 
"FSTL5 WILD-TYPE" "FSTL5 WILD-TYPE"   "FSTL5 MUTATED" "FSTL5 WILD-TYPE" 
     TCGA-05-4390      TCGA-05-4396      TCGA-05-4397      TCGA-05-4398 
  "FSTL5 MUTATED"   "FSTL5 MUTATED" "FSTL5 WILD-TYPE"   "FSTL5 MUTATED" 
     TCGA-05-4402      TCGA-05-4405      TCGA-05-4415      TCGA-05-4417 
"FSTL5 WILD-TYPE" "FSTL5 WILD-TYPE" "FSTL5 WILD-TYPE" "FSTL5 WILD-TYPE" 
     TCGA-05-4418      TCGA-05-4420      TCGA-05-4424      TCGA-05-4426 
"FSTL5 WILD-TYPE" "FSTL5 WILD-TYPE" "FSTL5 WILD-TYPE" "FSTL5 WILD-TYPE" 
     TCGA-05-4427      TCGA-05-4430      TCGA-05-4432      TCGA-05-4433 
"FSTL5 WILD-TYPE" "FSTL5 WILD-TYPE" "FSTL5 WILD-TYPE" "FSTL5 WILD-TYPE" 
     TCGA-05-4434      TCGA-05-5420      TCGA-05-5423      TCGA-05-5425 
"FSTL5 WILD-TYPE" "FSTL5 WILD-TYPE" "FSTL5 WILD-TYPE" "FSTL5 WILD-TYPE" 
     TCGA-05-5429      TCGA-05-5715      TCGA-35-3615      TCGA-35-4122 
"FSTL5 WILD-TYPE" "FSTL5 WILD-TYPE" "FSTL5 WILD-TYPE" "FSTL5 WILD-TYPE" 
     TCGA-35-4123      TCGA-35-5375      TCGA-38-4625      TCGA-38-4626 
"FSTL5 WILD-TYPE" "FSTL5 WILD-TYPE" "FSTL5 WILD-TYPE" "FSTL5 WILD-TYPE" 
     TCGA-38-4627      TCGA-38-4628      TCGA-38-4629      TCGA-38-4630 
"FSTL5 WILD-TYPE" "FSTL5 WILD-TYPE" "FSTL5 WILD-TYPE" "FSTL5 WILD-TYPE" 
     TCGA-38-4631      TCGA-38-4632      TCGA-38-6178      TCGA-44-2655 
"FSTL5 WILD-TYPE" "FSTL5 WILD-TYPE"   "FSTL5 MUTATED" "FSTL5 WILD-TYPE" 
     TCGA-44-2656      TCGA-44-2657      TCGA-44-2659      TCGA-44-2661 
"FSTL5 WILD-TYPE" "FSTL5 WILD-TYPE" "FSTL5 WILD-TYPE" "FSTL5 WILD-TYPE" 
     TCGA-44-2662      TCGA-44-2665      TCGA-44-2666      TCGA-44-2668 
"FSTL5 WILD-TYPE" "FSTL5 WILD-TYPE" "FSTL5 WILD-TYPE" "FSTL5 WILD-TYPE" 
     TCGA-44-3396      TCGA-44-3398      TCGA-44-3918      TCGA-44-3919 
"FSTL5 WILD-TYPE" "FSTL5 WILD-TYPE"   "FSTL5 MUTATED" "FSTL5 WILD-TYPE" 
     TCGA-44-4112      TCGA-44-5643      TCGA-44-5645      TCGA-44-6144 
"FSTL5 WILD-TYPE" "FSTL5 WILD-TYPE" "FSTL5 WILD-TYPE" "FSTL5 WILD-TYPE" 
     TCGA-44-6145      TCGA-44-6146      TCGA-44-6147      TCGA-44-6148 
"FSTL5 WILD-TYPE" "FSTL5 WILD-TYPE"   "FSTL5 MUTATED" "FSTL5 WILD-TYPE" 
     TCGA-44-6774      TCGA-44-6775      TCGA-44-6776      TCGA-44-6777 
  "FSTL5 MUTATED" "FSTL5 WILD-TYPE" "FSTL5 WILD-TYPE"   "FSTL5 MUTATED" 
     TCGA-44-6778      TCGA-44-6779      TCGA-49-4486      TCGA-49-4487 
"FSTL5 WILD-TYPE" "FSTL5 WILD-TYPE" "FSTL5 WILD-TYPE" "FSTL5 WILD-TYPE" 
     TCGA-49-4488      TCGA-49-4490      TCGA-49-4494      TCGA-49-4501 
"FSTL5 WILD-TYPE" "FSTL5 WILD-TYPE" "FSTL5 WILD-TYPE" "FSTL5 WILD-TYPE" 
     TCGA-49-4505      TCGA-49-4506      TCGA-49-4507      TCGA-49-4510 
"FSTL5 WILD-TYPE" "FSTL5 WILD-TYPE" "FSTL5 WILD-TYPE" "FSTL5 WILD-TYPE" 
     TCGA-49-4512      TCGA-49-4514      TCGA-49-6742      TCGA-49-6743 
"FSTL5 WILD-TYPE" "FSTL5 WILD-TYPE" "FSTL5 WILD-TYPE" "FSTL5 WILD-TYPE" 
     TCGA-49-6744      TCGA-49-6745      TCGA-50-5044      TCGA-50-5045 
"FSTL5 WILD-TYPE" "FSTL5 WILD-TYPE" "FSTL5 WILD-TYPE" "FSTL5 WILD-TYPE" 
     TCGA-50-5049      TCGA-50-5051      TCGA-50-5055      TCGA-50-5066 
"FSTL5 WILD-TYPE" "FSTL5 WILD-TYPE" "FSTL5 WILD-TYPE" "FSTL5 WILD-TYPE" 
     TCGA-50-5068      TCGA-50-5072      TCGA-50-5930      TCGA-50-5931 
"FSTL5 WILD-TYPE" "FSTL5 WILD-TYPE" "FSTL5 WILD-TYPE" "FSTL5 WILD-TYPE" 
     TCGA-50-5932      TCGA-50-5933      TCGA-50-5935      TCGA-50-5936 
"FSTL5 WILD-TYPE" "FSTL5 WILD-TYPE" "FSTL5 WILD-TYPE" "FSTL5 WILD-TYPE" 
     TCGA-50-5939      TCGA-50-5941      TCGA-50-5942      TCGA-50-5944 
"FSTL5 WILD-TYPE" "FSTL5 WILD-TYPE" "FSTL5 WILD-TYPE" "FSTL5 WILD-TYPE" 
     TCGA-50-5946      TCGA-50-6590      TCGA-50-6591      TCGA-50-6592 
"FSTL5 WILD-TYPE" "FSTL5 WILD-TYPE" "FSTL5 WILD-TYPE" "FSTL5 WILD-TYPE" 
     TCGA-50-6593      TCGA-50-6594      TCGA-50-6595      TCGA-50-6597 
"FSTL5 WILD-TYPE" "FSTL5 WILD-TYPE" "FSTL5 WILD-TYPE" "FSTL5 WILD-TYPE" 
     TCGA-55-1592      TCGA-55-1594      TCGA-55-1595      TCGA-55-1596 
"FSTL5 WILD-TYPE" "FSTL5 WILD-TYPE" "FSTL5 WILD-TYPE" "FSTL5 WILD-TYPE" 
     TCGA-55-5899      TCGA-55-6543      TCGA-55-6642      TCGA-55-6712 
"FSTL5 WILD-TYPE" "FSTL5 WILD-TYPE" "FSTL5 WILD-TYPE" "FSTL5 WILD-TYPE" 
     TCGA-64-1676      TCGA-64-1677      TCGA-64-1678      TCGA-64-1680 
"FSTL5 WILD-TYPE" "FSTL5 WILD-TYPE" "FSTL5 WILD-TYPE" "FSTL5 WILD-TYPE" 
     TCGA-64-5774      TCGA-64-5775      TCGA-64-5778      TCGA-64-5779 
"FSTL5 WILD-TYPE" "FSTL5 WILD-TYPE" "FSTL5 WILD-TYPE" "FSTL5 WILD-TYPE" 
     TCGA-64-5781      TCGA-64-5815      TCGA-67-3770      TCGA-67-3771 
"FSTL5 WILD-TYPE" "FSTL5 WILD-TYPE" "FSTL5 WILD-TYPE" "FSTL5 WILD-TYPE" 
     TCGA-67-3772      TCGA-67-3773      TCGA-67-3774      TCGA-67-6215 
"FSTL5 WILD-TYPE" "FSTL5 WILD-TYPE" "FSTL5 WILD-TYPE" "FSTL5 WILD-TYPE" 
     TCGA-67-6216      TCGA-67-6217      TCGA-71-6725      TCGA-73-4658 
"FSTL5 WILD-TYPE" "FSTL5 WILD-TYPE" "FSTL5 WILD-TYPE"   "FSTL5 MUTATED" 
     TCGA-73-4659      TCGA-73-4662      TCGA-73-4666      TCGA-73-4668 
"FSTL5 WILD-TYPE" "FSTL5 WILD-TYPE"   "FSTL5 MUTATED"   "FSTL5 MUTATED" 
     TCGA-73-4670      TCGA-73-4675      TCGA-73-4676      TCGA-73-4677 
"FSTL5 WILD-TYPE" "FSTL5 WILD-TYPE" "FSTL5 WILD-TYPE" "FSTL5 WILD-TYPE" 
     TCGA-91-6828      TCGA-91-6829      TCGA-91-6831      TCGA-91-6835 
"FSTL5 WILD-TYPE" "FSTL5 WILD-TYPE" "FSTL5 WILD-TYPE" "FSTL5 WILD-TYPE" 
     TCGA-91-6836 
  "FSTL5 MUTATED" 
     TCGA-05-4249      TCGA-05-4250      TCGA-05-4382      TCGA-05-4384 
"FSTL5 WILD-TYPE" "FSTL5 WILD-TYPE"   "FSTL5 MUTATED" "FSTL5 WILD-TYPE" 
     TCGA-05-4390      TCGA-05-4396      TCGA-05-4397      TCGA-05-4398 
  "FSTL5 MUTATED"   "FSTL5 MUTATED" "FSTL5 WILD-TYPE"   "FSTL5 MUTATED" 
     TCGA-05-4402      TCGA-05-4405      TCGA-05-4415      TCGA-05-4417 
"FSTL5 WILD-TYPE" "FSTL5 WILD-TYPE" "FSTL5 WILD-TYPE" "FSTL5 WILD-TYPE" 
     TCGA-05-4418      TCGA-05-4420      TCGA-05-4424      TCGA-05-4426 
"FSTL5 WILD-TYPE" "FSTL5 WILD-TYPE" "FSTL5 WILD-TYPE" "FSTL5 WILD-TYPE" 
     TCGA-05-4427      TCGA-05-4430      TCGA-05-4432      TCGA-05-4433 
"FSTL5 WILD-TYPE" "FSTL5 WILD-TYPE" "FSTL5 WILD-TYPE" "FSTL5 WILD-TYPE" 
     TCGA-05-4434      TCGA-05-5420      TCGA-05-5423      TCGA-05-5425 
"FSTL5 WILD-TYPE" "FSTL5 WILD-TYPE" "FSTL5 WILD-TYPE" "FSTL5 WILD-TYPE" 
     TCGA-05-5429      TCGA-05-5715      TCGA-35-3615      TCGA-35-4122 
"FSTL5 WILD-TYPE" "FSTL5 WILD-TYPE" "FSTL5 WILD-TYPE" "FSTL5 WILD-TYPE" 
     TCGA-35-4123      TCGA-35-5375      TCGA-38-4625      TCGA-38-4626 
"FSTL5 WILD-TYPE" "FSTL5 WILD-TYPE" "FSTL5 WILD-TYPE" "FSTL5 WILD-TYPE" 
     TCGA-38-4627      TCGA-38-4628      TCGA-38-4629      TCGA-38-4630 
"FSTL5 WILD-TYPE" "FSTL5 WILD-TYPE" "FSTL5 WILD-TYPE" "FSTL5 WILD-TYPE" 
     TCGA-38-4631      TCGA-38-4632      TCGA-38-6178      TCGA-44-2655 
"FSTL5 WILD-TYPE" "FSTL5 WILD-TYPE"   "FSTL5 MUTATED" "FSTL5 WILD-TYPE" 
     TCGA-44-2656      TCGA-44-2657      TCGA-44-2659      TCGA-44-2661 
"FSTL5 WILD-TYPE" "FSTL5 WILD-TYPE" "FSTL5 WILD-TYPE" "FSTL5 WILD-TYPE" 
     TCGA-44-2662      TCGA-44-2665      TCGA-44-2666      TCGA-44-2668 
"FSTL5 WILD-TYPE" "FSTL5 WILD-TYPE" "FSTL5 WILD-TYPE" "FSTL5 WILD-TYPE" 
     TCGA-44-3396      TCGA-44-3398      TCGA-44-3918      TCGA-44-3919 
"FSTL5 WILD-TYPE" "FSTL5 WILD-TYPE"   "FSTL5 MUTATED" "FSTL5 WILD-TYPE" 
     TCGA-44-4112      TCGA-44-5643      TCGA-44-5645      TCGA-44-6144 
"FSTL5 WILD-TYPE" "FSTL5 WILD-TYPE" "FSTL5 WILD-TYPE" "FSTL5 WILD-TYPE" 
     TCGA-44-6145      TCGA-44-6146      TCGA-44-6147      TCGA-44-6148 
"FSTL5 WILD-TYPE" "FSTL5 WILD-TYPE"   "FSTL5 MUTATED" "FSTL5 WILD-TYPE" 
     TCGA-44-6774      TCGA-44-6775      TCGA-44-6776      TCGA-44-6777 
  "FSTL5 MUTATED" "FSTL5 WILD-TYPE" "FSTL5 WILD-TYPE"   "FSTL5 MUTATED" 
     TCGA-44-6778      TCGA-44-6779      TCGA-49-4486      TCGA-49-4487 
"FSTL5 WILD-TYPE" "FSTL5 WILD-TYPE" "FSTL5 WILD-TYPE" "FSTL5 WILD-TYPE" 
     TCGA-49-4488      TCGA-49-4490      TCGA-49-4494      TCGA-49-4501 
"FSTL5 WILD-TYPE" "FSTL5 WILD-TYPE" "FSTL5 WILD-TYPE" "FSTL5 WILD-TYPE" 
     TCGA-49-4505      TCGA-49-4506      TCGA-49-4507      TCGA-49-4510 
"FSTL5 WILD-TYPE" "FSTL5 WILD-TYPE" "FSTL5 WILD-TYPE" "FSTL5 WILD-TYPE" 
     TCGA-49-4512      TCGA-49-4514      TCGA-49-6742      TCGA-49-6743 
"FSTL5 WILD-TYPE" "FSTL5 WILD-TYPE" "FSTL5 WILD-TYPE" "FSTL5 WILD-TYPE" 
     TCGA-49-6744      TCGA-49-6745      TCGA-50-5044      TCGA-50-5045 
"FSTL5 WILD-TYPE" "FSTL5 WILD-TYPE" "FSTL5 WILD-TYPE" "FSTL5 WILD-TYPE" 
     TCGA-50-5049      TCGA-50-5051      TCGA-50-5055      TCGA-50-5066 
"FSTL5 WILD-TYPE" "FSTL5 WILD-TYPE" "FSTL5 WILD-TYPE" "FSTL5 WILD-TYPE" 
     TCGA-50-5068      TCGA-50-5072      TCGA-50-5930      TCGA-50-5931 
"FSTL5 WILD-TYPE" "FSTL5 WILD-TYPE" "FSTL5 WILD-TYPE" "FSTL5 WILD-TYPE" 
     TCGA-50-5932      TCGA-50-5933      TCGA-50-5935      TCGA-50-5936 
"FSTL5 WILD-TYPE" "FSTL5 WILD-TYPE" "FSTL5 WILD-TYPE" "FSTL5 WILD-TYPE" 
     TCGA-50-5939      TCGA-50-5941      TCGA-50-5942      TCGA-50-5944 
"FSTL5 WILD-TYPE" "FSTL5 WILD-TYPE" "FSTL5 WILD-TYPE" "FSTL5 WILD-TYPE" 
     TCGA-50-5946      TCGA-50-6590      TCGA-50-6591      TCGA-50-6592 
"FSTL5 WILD-TYPE" "FSTL5 WILD-TYPE" "FSTL5 WILD-TYPE" "FSTL5 WILD-TYPE" 
     TCGA-50-6593      TCGA-50-6594      TCGA-50-6595      TCGA-50-6597 
"FSTL5 WILD-TYPE" "FSTL5 WILD-TYPE" "FSTL5 WILD-TYPE" "FSTL5 WILD-TYPE" 
     TCGA-55-1592      TCGA-55-1594      TCGA-55-1595      TCGA-55-1596 
"FSTL5 WILD-TYPE" "FSTL5 WILD-TYPE" "FSTL5 WILD-TYPE" "FSTL5 WILD-TYPE" 
     TCGA-55-5899      TCGA-55-6543      TCGA-55-6642      TCGA-55-6712 
"FSTL5 WILD-TYPE" "FSTL5 WILD-TYPE" "FSTL5 WILD-TYPE" "FSTL5 WILD-TYPE" 
     TCGA-64-1676      TCGA-64-1677      TCGA-64-1678      TCGA-64-1680 
"FSTL5 WILD-TYPE" "FSTL5 WILD-TYPE" "FSTL5 WILD-TYPE" "FSTL5 WILD-TYPE" 
     TCGA-64-5774      TCGA-64-5775      TCGA-64-5778      TCGA-64-5779 
"FSTL5 WILD-TYPE" "FSTL5 WILD-TYPE" "FSTL5 WILD-TYPE" "FSTL5 WILD-TYPE" 
     TCGA-64-5781      TCGA-64-5815      TCGA-67-3770      TCGA-67-3771 
"FSTL5 WILD-TYPE" "FSTL5 WILD-TYPE" "FSTL5 WILD-TYPE" "FSTL5 WILD-TYPE" 
     TCGA-67-3772      TCGA-67-3773      TCGA-67-3774      TCGA-67-6215 
"FSTL5 WILD-TYPE" "FSTL5 WILD-TYPE" "FSTL5 WILD-TYPE" "FSTL5 WILD-TYPE" 
     TCGA-67-6216      TCGA-67-6217      TCGA-71-6725      TCGA-73-4658 
"FSTL5 WILD-TYPE" "FSTL5 WILD-TYPE" "FSTL5 WILD-TYPE"   "FSTL5 MUTATED" 
     TCGA-73-4659      TCGA-73-4662      TCGA-73-4666      TCGA-73-4668 
"FSTL5 WILD-TYPE" "FSTL5 WILD-TYPE"   "FSTL5 MUTATED"   "FSTL5 MUTATED" 
     TCGA-73-4670      TCGA-73-4675      TCGA-73-4676      TCGA-73-4677 
"FSTL5 WILD-TYPE" "FSTL5 WILD-TYPE" "FSTL5 WILD-TYPE" "FSTL5 WILD-TYPE" 
     TCGA-91-6828      TCGA-91-6829      TCGA-91-6831      TCGA-91-6835 
"FSTL5 WILD-TYPE" "FSTL5 WILD-TYPE" "FSTL5 WILD-TYPE" "FSTL5 WILD-TYPE" 
     TCGA-91-6836 
  "FSTL5 MUTATED" 
[1] "hr=" "1.5"
D158V2, continuous
D158V3, binary
[1] "tbl2"
                 cls
clus              [,1] [,2]
  FSTL5 MUTATED     11    5
  FSTL5 WILD-TYPE   82   74
        clus
vv       FSTL5 MUTATED FSTL5 WILD-TYPE
  FEMALE            11              82
  MALE               5              74
D158V4, continuous
[1] "Remove cluster labels:" "FSTL5 MUTATED"         
clus
  FSTL5 MUTATED FSTL5 WILD-TYPE 
              2              10 
     TCGA-35-4122      TCGA-35-4123      TCGA-35-5375      TCGA-64-1677 
"FSTL5 WILD-TYPE" "FSTL5 WILD-TYPE" "FSTL5 WILD-TYPE" "FSTL5 WILD-TYPE" 
     TCGA-64-5778      TCGA-71-6725      TCGA-73-4659      TCGA-73-4662 
"FSTL5 WILD-TYPE" "FSTL5 WILD-TYPE" "FSTL5 WILD-TYPE" "FSTL5 WILD-TYPE" 
     TCGA-73-4676      TCGA-75-5122 
"FSTL5 WILD-TYPE" "FSTL5 WILD-TYPE" 
D158V5, multiclass
D158V6, multiclass
    clus
vv   FSTL5 MUTATED FSTL5 WILD-TYPE
  T1             4              37
  T2             9              99
  T3             1              13
  T4             2               6
D158V7, multiclass
       clus
vv      FSTL5 MUTATED FSTL5 WILD-TYPE
  N0                9              86
  N1                2              35
  N2+N3             3              32
D158V8, multiclass
    clus
vv   FSTL5 MUTATED FSTL5 WILD-TYPE
  M0            12             125
  M1             1               8
  MX             2              20
D158V9, multiclass
     clus
vv    FSTL5 MUTATED FSTL5 WILD-TYPE
  I              10              78
  II              1              32
  III             4              35
  IV              1               8
D158V10, binary
[1] "tbl2"
                 cls
clus              [,1] [,2]
  FSTL5 MUTATED      2   14
  FSTL5 WILD-TYPE   14  142
     clus
vv    FSTL5 MUTATED FSTL5 WILD-TYPE
  NO              2              14
  YES            14             142
D158V11, continuous
D158V12, continuous
D158V13, multiclass
                                             clus
vv                                            FSTL5 MUTATED FSTL5 WILD-TYPE
  CURRENT REFORMED SMOKER FOR < OR = 15 YEARS             7              55
  CURRENT REFORMED SMOKER FOR > 15 YEARS                  5              41
  CURRENT SMOKER                                          3              25
  LIFELONG NON-SMOKER                                     1              23
D158V14, continuous

Clustering(159) Variable = NLRP14 MUTATION ANALYSIS
D159V1, survival
                  sevent
clus2               0  1
  NLRP14 MUTATED   10  7
  NLRP14 WILD-TYPE 89 43
  NLRP14 MUTATED NLRP14 WILD-TYPE 
              17              132 
  NLRP14 MUTATED NLRP14 WILD-TYPE 
               7               43 
$`NLRP14 MUTATED`
TCGA-05-4382 TCGA-05-4396 TCGA-05-4397 TCGA-05-4432 TCGA-35-3615 TCGA-35-5375 
       19.92         9.96        24.03        25.02         0.46         8.68 
TCGA-38-4628 TCGA-38-4631 TCGA-44-2656 TCGA-44-2659 TCGA-44-3396 TCGA-49-4494 
       49.02        11.64        19.10        17.39        10.22        35.54 
TCGA-49-4506 TCGA-50-5941 TCGA-50-6592 TCGA-55-5899 TCGA-67-3771 
       32.84         9.37        25.51         2.86         1.97 

$`NLRP14 WILD-TYPE`
TCGA-05-4249 TCGA-05-4250 TCGA-05-4384 TCGA-05-4390 TCGA-05-4398 TCGA-05-4402 
       38.07         3.98        14.01        37.02        47.05         8.02 
TCGA-05-4405 TCGA-05-4415 TCGA-05-4417 TCGA-05-4418 TCGA-05-4420 TCGA-05-4424 
       20.05         2.96        14.93         8.98        29.95        30.02 
TCGA-05-4426 TCGA-05-4427 TCGA-05-4430 TCGA-05-4433 TCGA-05-4434 TCGA-05-5420 
       26.01        26.01        25.02        24.00        15.02         1.02 
TCGA-05-5423 TCGA-05-5425 TCGA-05-5429 TCGA-05-5715 TCGA-35-4122 TCGA-35-4123 
        4.96         2.96         0.99         2.04         7.36         5.95 
TCGA-38-4625 TCGA-38-4626 TCGA-38-4627 TCGA-38-4629 TCGA-38-4630 TCGA-38-4632 
       47.61        85.32        37.71        28.37        35.28        44.61 
TCGA-38-6178 TCGA-44-2655 TCGA-44-2657 TCGA-44-2661 TCGA-44-2662 TCGA-44-2665 
        5.19        18.87        13.15         3.39        15.78        13.15 
TCGA-44-2666 TCGA-44-2668 TCGA-44-3398 TCGA-44-3918 TCGA-44-3919 TCGA-44-4112 
        3.19         8.09         8.32         6.44         6.21         4.60 
TCGA-44-5643 TCGA-44-5645 TCGA-44-6144 TCGA-44-6145 TCGA-44-6146 TCGA-44-6147 
        3.48         6.84         0.30         3.35         9.93         7.76 
TCGA-44-6148 TCGA-44-6774 TCGA-44-6775 TCGA-44-6776 TCGA-44-6777 TCGA-44-6778 
        3.12         5.42         2.70        63.72        32.45        36.49 
TCGA-44-6779 TCGA-49-4486 TCGA-49-4487 TCGA-49-4488 TCGA-49-4490 TCGA-49-4501 
       16.41        76.21        28.11        28.57        12.66        46.72 
TCGA-49-4505 TCGA-49-4507 TCGA-49-4510 TCGA-49-4512 TCGA-49-4514 TCGA-49-6742 
       14.07         8.81        29.46        29.75        43.20        15.02 
TCGA-49-6743 TCGA-49-6744 TCGA-49-6745 TCGA-50-5044 TCGA-50-5045 TCGA-50-5049 
       12.13        12.99         4.93        20.48        71.47        48.82 
TCGA-50-5051 TCGA-50-5055 TCGA-50-5066 TCGA-50-5068 TCGA-50-5072 TCGA-50-5930 
       14.96        25.81         9.76        49.28         8.05         9.27 
TCGA-50-5931 TCGA-50-5932 TCGA-50-5933 TCGA-50-5935 TCGA-50-5936 TCGA-50-5939 
        8.78        35.87        77.88        21.47         8.45        15.12 
TCGA-50-5942 TCGA-50-5944 TCGA-50-5946 TCGA-50-6590 TCGA-50-6591 TCGA-50-6593 
        4.44        12.26        11.47        42.31         3.88        11.05 
TCGA-50-6594 TCGA-50-6595 TCGA-50-6597 TCGA-55-1592 TCGA-55-1594 TCGA-55-1595 
       12.16         6.21        33.37        23.05        38.73        48.62 
TCGA-55-1596 TCGA-55-6543 TCGA-55-6642 TCGA-55-6712 TCGA-64-1676 TCGA-64-1677 
       45.17         0.07        32.61         0.79        56.81        20.65 
TCGA-64-1678 TCGA-64-1680 TCGA-64-5774 TCGA-64-5775 TCGA-64-5778 TCGA-64-5779 
       39.09        37.02        83.84         0.10        30.44        16.67 
TCGA-64-5781 TCGA-64-5815 TCGA-67-3770 TCGA-67-3772 TCGA-67-3773 TCGA-67-3774 
       39.52         7.33         0.99         0.59         2.04         0.59 
TCGA-67-6215 TCGA-67-6216 TCGA-67-6217 TCGA-71-6725 TCGA-73-4658 TCGA-73-4659 
        0.89         0.69        13.87         2.01        52.57        23.38 
TCGA-73-4662 TCGA-73-4666 TCGA-73-4668 TCGA-73-4670 TCGA-73-4675 TCGA-73-4676 
       29.95        20.28        15.35         0.46         1.32         4.01 
TCGA-73-4677 TCGA-91-6828 TCGA-91-6829 TCGA-91-6831 TCGA-91-6835 TCGA-91-6836 
        1.25         1.22        41.33         1.28         1.15         0.36 

  NLRP14 MUTATED NLRP14 WILD-TYPE 
            0.46             0.07 
  NLRP14 MUTATED NLRP14 WILD-TYPE 
           49.02            85.32 
  NLRP14 MUTATED NLRP14 WILD-TYPE 
           17.39            13.51 
[1] "0.5 - 49.0 (17.4)" "0.1 - 85.3 (13.5)"
      TCGA-05-4249       TCGA-05-4250       TCGA-05-4382       TCGA-05-4384 
"NLRP14 WILD-TYPE" "NLRP14 WILD-TYPE"   "NLRP14 MUTATED" "NLRP14 WILD-TYPE" 
      TCGA-05-4390       TCGA-05-4396       TCGA-05-4397       TCGA-05-4398 
"NLRP14 WILD-TYPE"   "NLRP14 MUTATED"   "NLRP14 MUTATED" "NLRP14 WILD-TYPE" 
      TCGA-05-4402       TCGA-05-4405       TCGA-05-4415       TCGA-05-4417 
"NLRP14 WILD-TYPE" "NLRP14 WILD-TYPE" "NLRP14 WILD-TYPE" "NLRP14 WILD-TYPE" 
      TCGA-05-4418       TCGA-05-4420       TCGA-05-4424       TCGA-05-4426 
"NLRP14 WILD-TYPE" "NLRP14 WILD-TYPE" "NLRP14 WILD-TYPE" "NLRP14 WILD-TYPE" 
      TCGA-05-4427       TCGA-05-4430       TCGA-05-4432       TCGA-05-4433 
"NLRP14 WILD-TYPE" "NLRP14 WILD-TYPE"   "NLRP14 MUTATED" "NLRP14 WILD-TYPE" 
      TCGA-05-4434       TCGA-05-5420       TCGA-05-5423       TCGA-05-5425 
"NLRP14 WILD-TYPE" "NLRP14 WILD-TYPE" "NLRP14 WILD-TYPE" "NLRP14 WILD-TYPE" 
      TCGA-05-5429       TCGA-05-5715       TCGA-35-3615       TCGA-35-4122 
"NLRP14 WILD-TYPE" "NLRP14 WILD-TYPE"   "NLRP14 MUTATED" "NLRP14 WILD-TYPE" 
      TCGA-35-4123       TCGA-35-5375       TCGA-38-4625       TCGA-38-4626 
"NLRP14 WILD-TYPE"   "NLRP14 MUTATED" "NLRP14 WILD-TYPE" "NLRP14 WILD-TYPE" 
      TCGA-38-4627       TCGA-38-4628       TCGA-38-4629       TCGA-38-4630 
"NLRP14 WILD-TYPE"   "NLRP14 MUTATED" "NLRP14 WILD-TYPE" "NLRP14 WILD-TYPE" 
      TCGA-38-4631       TCGA-38-4632       TCGA-38-6178       TCGA-44-2655 
  "NLRP14 MUTATED" "NLRP14 WILD-TYPE" "NLRP14 WILD-TYPE" "NLRP14 WILD-TYPE" 
      TCGA-44-2656       TCGA-44-2657       TCGA-44-2659       TCGA-44-2661 
  "NLRP14 MUTATED" "NLRP14 WILD-TYPE"   "NLRP14 MUTATED" "NLRP14 WILD-TYPE" 
      TCGA-44-2662       TCGA-44-2665       TCGA-44-2666       TCGA-44-2668 
"NLRP14 WILD-TYPE" "NLRP14 WILD-TYPE" "NLRP14 WILD-TYPE" "NLRP14 WILD-TYPE" 
      TCGA-44-3396       TCGA-44-3398       TCGA-44-3918       TCGA-44-3919 
  "NLRP14 MUTATED" "NLRP14 WILD-TYPE" "NLRP14 WILD-TYPE" "NLRP14 WILD-TYPE" 
      TCGA-44-4112       TCGA-44-5643       TCGA-44-5645       TCGA-44-6144 
"NLRP14 WILD-TYPE" "NLRP14 WILD-TYPE" "NLRP14 WILD-TYPE" "NLRP14 WILD-TYPE" 
      TCGA-44-6145       TCGA-44-6146       TCGA-44-6147       TCGA-44-6148 
"NLRP14 WILD-TYPE" "NLRP14 WILD-TYPE" "NLRP14 WILD-TYPE" "NLRP14 WILD-TYPE" 
      TCGA-44-6774       TCGA-44-6775       TCGA-44-6776       TCGA-44-6777 
"NLRP14 WILD-TYPE" "NLRP14 WILD-TYPE" "NLRP14 WILD-TYPE" "NLRP14 WILD-TYPE" 
      TCGA-44-6778       TCGA-44-6779       TCGA-49-4486       TCGA-49-4487 
"NLRP14 WILD-TYPE" "NLRP14 WILD-TYPE" "NLRP14 WILD-TYPE" "NLRP14 WILD-TYPE" 
      TCGA-49-4488       TCGA-49-4490       TCGA-49-4494       TCGA-49-4501 
"NLRP14 WILD-TYPE" "NLRP14 WILD-TYPE"   "NLRP14 MUTATED" "NLRP14 WILD-TYPE" 
      TCGA-49-4505       TCGA-49-4506       TCGA-49-4507       TCGA-49-4510 
"NLRP14 WILD-TYPE"   "NLRP14 MUTATED" "NLRP14 WILD-TYPE" "NLRP14 WILD-TYPE" 
      TCGA-49-4512       TCGA-49-4514       TCGA-49-6742       TCGA-49-6743 
"NLRP14 WILD-TYPE" "NLRP14 WILD-TYPE" "NLRP14 WILD-TYPE" "NLRP14 WILD-TYPE" 
      TCGA-49-6744       TCGA-49-6745       TCGA-50-5044       TCGA-50-5045 
"NLRP14 WILD-TYPE" "NLRP14 WILD-TYPE" "NLRP14 WILD-TYPE" "NLRP14 WILD-TYPE" 
      TCGA-50-5049       TCGA-50-5051       TCGA-50-5055       TCGA-50-5066 
"NLRP14 WILD-TYPE" "NLRP14 WILD-TYPE" "NLRP14 WILD-TYPE" "NLRP14 WILD-TYPE" 
      TCGA-50-5068       TCGA-50-5072       TCGA-50-5930       TCGA-50-5931 
"NLRP14 WILD-TYPE" "NLRP14 WILD-TYPE" "NLRP14 WILD-TYPE" "NLRP14 WILD-TYPE" 
      TCGA-50-5932       TCGA-50-5933       TCGA-50-5935       TCGA-50-5936 
"NLRP14 WILD-TYPE" "NLRP14 WILD-TYPE" "NLRP14 WILD-TYPE" "NLRP14 WILD-TYPE" 
      TCGA-50-5939       TCGA-50-5941       TCGA-50-5942       TCGA-50-5944 
"NLRP14 WILD-TYPE"   "NLRP14 MUTATED" "NLRP14 WILD-TYPE" "NLRP14 WILD-TYPE" 
      TCGA-50-5946       TCGA-50-6590       TCGA-50-6591       TCGA-50-6592 
"NLRP14 WILD-TYPE" "NLRP14 WILD-TYPE" "NLRP14 WILD-TYPE"   "NLRP14 MUTATED" 
      TCGA-50-6593       TCGA-50-6594       TCGA-50-6595       TCGA-50-6597 
"NLRP14 WILD-TYPE" "NLRP14 WILD-TYPE" "NLRP14 WILD-TYPE" "NLRP14 WILD-TYPE" 
      TCGA-55-1592       TCGA-55-1594       TCGA-55-1595       TCGA-55-1596 
"NLRP14 WILD-TYPE" "NLRP14 WILD-TYPE" "NLRP14 WILD-TYPE" "NLRP14 WILD-TYPE" 
      TCGA-55-5899       TCGA-55-6543       TCGA-55-6642       TCGA-55-6712 
  "NLRP14 MUTATED" "NLRP14 WILD-TYPE" "NLRP14 WILD-TYPE" "NLRP14 WILD-TYPE" 
      TCGA-64-1676       TCGA-64-1677       TCGA-64-1678       TCGA-64-1680 
"NLRP14 WILD-TYPE" "NLRP14 WILD-TYPE" "NLRP14 WILD-TYPE" "NLRP14 WILD-TYPE" 
      TCGA-64-5774       TCGA-64-5775       TCGA-64-5778       TCGA-64-5779 
"NLRP14 WILD-TYPE" "NLRP14 WILD-TYPE" "NLRP14 WILD-TYPE" "NLRP14 WILD-TYPE" 
      TCGA-64-5781       TCGA-64-5815       TCGA-67-3770       TCGA-67-3771 
"NLRP14 WILD-TYPE" "NLRP14 WILD-TYPE" "NLRP14 WILD-TYPE"   "NLRP14 MUTATED" 
      TCGA-67-3772       TCGA-67-3773       TCGA-67-3774       TCGA-67-6215 
"NLRP14 WILD-TYPE" "NLRP14 WILD-TYPE" "NLRP14 WILD-TYPE" "NLRP14 WILD-TYPE" 
      TCGA-67-6216       TCGA-67-6217       TCGA-71-6725       TCGA-73-4658 
"NLRP14 WILD-TYPE" "NLRP14 WILD-TYPE" "NLRP14 WILD-TYPE" "NLRP14 WILD-TYPE" 
      TCGA-73-4659       TCGA-73-4662       TCGA-73-4666       TCGA-73-4668 
"NLRP14 WILD-TYPE" "NLRP14 WILD-TYPE" "NLRP14 WILD-TYPE" "NLRP14 WILD-TYPE" 
      TCGA-73-4670       TCGA-73-4675       TCGA-73-4676       TCGA-73-4677 
"NLRP14 WILD-TYPE" "NLRP14 WILD-TYPE" "NLRP14 WILD-TYPE" "NLRP14 WILD-TYPE" 
      TCGA-91-6828       TCGA-91-6829       TCGA-91-6831       TCGA-91-6835 
"NLRP14 WILD-TYPE" "NLRP14 WILD-TYPE" "NLRP14 WILD-TYPE" "NLRP14 WILD-TYPE" 
      TCGA-91-6836 
"NLRP14 WILD-TYPE" 
      TCGA-05-4249       TCGA-05-4250       TCGA-05-4382       TCGA-05-4384 
"NLRP14 WILD-TYPE" "NLRP14 WILD-TYPE"   "NLRP14 MUTATED" "NLRP14 WILD-TYPE" 
      TCGA-05-4390       TCGA-05-4396       TCGA-05-4397       TCGA-05-4398 
"NLRP14 WILD-TYPE"   "NLRP14 MUTATED"   "NLRP14 MUTATED" "NLRP14 WILD-TYPE" 
      TCGA-05-4402       TCGA-05-4405       TCGA-05-4415       TCGA-05-4417 
"NLRP14 WILD-TYPE" "NLRP14 WILD-TYPE" "NLRP14 WILD-TYPE" "NLRP14 WILD-TYPE" 
      TCGA-05-4418       TCGA-05-4420       TCGA-05-4424       TCGA-05-4426 
"NLRP14 WILD-TYPE" "NLRP14 WILD-TYPE" "NLRP14 WILD-TYPE" "NLRP14 WILD-TYPE" 
      TCGA-05-4427       TCGA-05-4430       TCGA-05-4432       TCGA-05-4433 
"NLRP14 WILD-TYPE" "NLRP14 WILD-TYPE"   "NLRP14 MUTATED" "NLRP14 WILD-TYPE" 
      TCGA-05-4434       TCGA-05-5420       TCGA-05-5423       TCGA-05-5425 
"NLRP14 WILD-TYPE" "NLRP14 WILD-TYPE" "NLRP14 WILD-TYPE" "NLRP14 WILD-TYPE" 
      TCGA-05-5429       TCGA-05-5715       TCGA-35-3615       TCGA-35-4122 
"NLRP14 WILD-TYPE" "NLRP14 WILD-TYPE"   "NLRP14 MUTATED" "NLRP14 WILD-TYPE" 
      TCGA-35-4123       TCGA-35-5375       TCGA-38-4625       TCGA-38-4626 
"NLRP14 WILD-TYPE"   "NLRP14 MUTATED" "NLRP14 WILD-TYPE" "NLRP14 WILD-TYPE" 
      TCGA-38-4627       TCGA-38-4628       TCGA-38-4629       TCGA-38-4630 
"NLRP14 WILD-TYPE"   "NLRP14 MUTATED" "NLRP14 WILD-TYPE" "NLRP14 WILD-TYPE" 
      TCGA-38-4631       TCGA-38-4632       TCGA-38-6178       TCGA-44-2655 
  "NLRP14 MUTATED" "NLRP14 WILD-TYPE" "NLRP14 WILD-TYPE" "NLRP14 WILD-TYPE" 
      TCGA-44-2656       TCGA-44-2657       TCGA-44-2659       TCGA-44-2661 
  "NLRP14 MUTATED" "NLRP14 WILD-TYPE"   "NLRP14 MUTATED" "NLRP14 WILD-TYPE" 
      TCGA-44-2662       TCGA-44-2665       TCGA-44-2666       TCGA-44-2668 
"NLRP14 WILD-TYPE" "NLRP14 WILD-TYPE" "NLRP14 WILD-TYPE" "NLRP14 WILD-TYPE" 
      TCGA-44-3396       TCGA-44-3398       TCGA-44-3918       TCGA-44-3919 
  "NLRP14 MUTATED" "NLRP14 WILD-TYPE" "NLRP14 WILD-TYPE" "NLRP14 WILD-TYPE" 
      TCGA-44-4112       TCGA-44-5643       TCGA-44-5645       TCGA-44-6144 
"NLRP14 WILD-TYPE" "NLRP14 WILD-TYPE" "NLRP14 WILD-TYPE" "NLRP14 WILD-TYPE" 
      TCGA-44-6145       TCGA-44-6146       TCGA-44-6147       TCGA-44-6148 
"NLRP14 WILD-TYPE" "NLRP14 WILD-TYPE" "NLRP14 WILD-TYPE" "NLRP14 WILD-TYPE" 
      TCGA-44-6774       TCGA-44-6775       TCGA-44-6776       TCGA-44-6777 
"NLRP14 WILD-TYPE" "NLRP14 WILD-TYPE" "NLRP14 WILD-TYPE" "NLRP14 WILD-TYPE" 
      TCGA-44-6778       TCGA-44-6779       TCGA-49-4486       TCGA-49-4487 
"NLRP14 WILD-TYPE" "NLRP14 WILD-TYPE" "NLRP14 WILD-TYPE" "NLRP14 WILD-TYPE" 
      TCGA-49-4488       TCGA-49-4490       TCGA-49-4494       TCGA-49-4501 
"NLRP14 WILD-TYPE" "NLRP14 WILD-TYPE"   "NLRP14 MUTATED" "NLRP14 WILD-TYPE" 
      TCGA-49-4505       TCGA-49-4506       TCGA-49-4507       TCGA-49-4510 
"NLRP14 WILD-TYPE"   "NLRP14 MUTATED" "NLRP14 WILD-TYPE" "NLRP14 WILD-TYPE" 
      TCGA-49-4512       TCGA-49-4514       TCGA-49-6742       TCGA-49-6743 
"NLRP14 WILD-TYPE" "NLRP14 WILD-TYPE" "NLRP14 WILD-TYPE" "NLRP14 WILD-TYPE" 
      TCGA-49-6744       TCGA-49-6745       TCGA-50-5044       TCGA-50-5045 
"NLRP14 WILD-TYPE" "NLRP14 WILD-TYPE" "NLRP14 WILD-TYPE" "NLRP14 WILD-TYPE" 
      TCGA-50-5049       TCGA-50-5051       TCGA-50-5055       TCGA-50-5066 
"NLRP14 WILD-TYPE" "NLRP14 WILD-TYPE" "NLRP14 WILD-TYPE" "NLRP14 WILD-TYPE" 
      TCGA-50-5068       TCGA-50-5072       TCGA-50-5930       TCGA-50-5931 
"NLRP14 WILD-TYPE" "NLRP14 WILD-TYPE" "NLRP14 WILD-TYPE" "NLRP14 WILD-TYPE" 
      TCGA-50-5932       TCGA-50-5933       TCGA-50-5935       TCGA-50-5936 
"NLRP14 WILD-TYPE" "NLRP14 WILD-TYPE" "NLRP14 WILD-TYPE" "NLRP14 WILD-TYPE" 
      TCGA-50-5939       TCGA-50-5941       TCGA-50-5942       TCGA-50-5944 
"NLRP14 WILD-TYPE"   "NLRP14 MUTATED" "NLRP14 WILD-TYPE" "NLRP14 WILD-TYPE" 
      TCGA-50-5946       TCGA-50-6590       TCGA-50-6591       TCGA-50-6592 
"NLRP14 WILD-TYPE" "NLRP14 WILD-TYPE" "NLRP14 WILD-TYPE"   "NLRP14 MUTATED" 
      TCGA-50-6593       TCGA-50-6594       TCGA-50-6595       TCGA-50-6597 
"NLRP14 WILD-TYPE" "NLRP14 WILD-TYPE" "NLRP14 WILD-TYPE" "NLRP14 WILD-TYPE" 
      TCGA-55-1592       TCGA-55-1594       TCGA-55-1595       TCGA-55-1596 
"NLRP14 WILD-TYPE" "NLRP14 WILD-TYPE" "NLRP14 WILD-TYPE" "NLRP14 WILD-TYPE" 
      TCGA-55-5899       TCGA-55-6543       TCGA-55-6642       TCGA-55-6712 
  "NLRP14 MUTATED" "NLRP14 WILD-TYPE" "NLRP14 WILD-TYPE" "NLRP14 WILD-TYPE" 
      TCGA-64-1676       TCGA-64-1677       TCGA-64-1678       TCGA-64-1680 
"NLRP14 WILD-TYPE" "NLRP14 WILD-TYPE" "NLRP14 WILD-TYPE" "NLRP14 WILD-TYPE" 
      TCGA-64-5774       TCGA-64-5775       TCGA-64-5778       TCGA-64-5779 
"NLRP14 WILD-TYPE" "NLRP14 WILD-TYPE" "NLRP14 WILD-TYPE" "NLRP14 WILD-TYPE" 
      TCGA-64-5781       TCGA-64-5815       TCGA-67-3770       TCGA-67-3771 
"NLRP14 WILD-TYPE" "NLRP14 WILD-TYPE" "NLRP14 WILD-TYPE"   "NLRP14 MUTATED" 
      TCGA-67-3772       TCGA-67-3773       TCGA-67-3774       TCGA-67-6215 
"NLRP14 WILD-TYPE" "NLRP14 WILD-TYPE" "NLRP14 WILD-TYPE" "NLRP14 WILD-TYPE" 
      TCGA-67-6216       TCGA-67-6217       TCGA-71-6725       TCGA-73-4658 
"NLRP14 WILD-TYPE" "NLRP14 WILD-TYPE" "NLRP14 WILD-TYPE" "NLRP14 WILD-TYPE" 
      TCGA-73-4659       TCGA-73-4662       TCGA-73-4666       TCGA-73-4668 
"NLRP14 WILD-TYPE" "NLRP14 WILD-TYPE" "NLRP14 WILD-TYPE" "NLRP14 WILD-TYPE" 
      TCGA-73-4670       TCGA-73-4675       TCGA-73-4676       TCGA-73-4677 
"NLRP14 WILD-TYPE" "NLRP14 WILD-TYPE" "NLRP14 WILD-TYPE" "NLRP14 WILD-TYPE" 
      TCGA-91-6828       TCGA-91-6829       TCGA-91-6831       TCGA-91-6835 
"NLRP14 WILD-TYPE" "NLRP14 WILD-TYPE" "NLRP14 WILD-TYPE" "NLRP14 WILD-TYPE" 
      TCGA-91-6836 
"NLRP14 WILD-TYPE" 
      TCGA-05-4249       TCGA-05-4250       TCGA-05-4382       TCGA-05-4384 
"NLRP14 WILD-TYPE" "NLRP14 WILD-TYPE"   "NLRP14 MUTATED" "NLRP14 WILD-TYPE" 
      TCGA-05-4390       TCGA-05-4396       TCGA-05-4397       TCGA-05-4398 
"NLRP14 WILD-TYPE"   "NLRP14 MUTATED"   "NLRP14 MUTATED" "NLRP14 WILD-TYPE" 
      TCGA-05-4402       TCGA-05-4405       TCGA-05-4415       TCGA-05-4417 
"NLRP14 WILD-TYPE" "NLRP14 WILD-TYPE" "NLRP14 WILD-TYPE" "NLRP14 WILD-TYPE" 
      TCGA-05-4418       TCGA-05-4420       TCGA-05-4424       TCGA-05-4426 
"NLRP14 WILD-TYPE" "NLRP14 WILD-TYPE" "NLRP14 WILD-TYPE" "NLRP14 WILD-TYPE" 
      TCGA-05-4427       TCGA-05-4430       TCGA-05-4432       TCGA-05-4433 
"NLRP14 WILD-TYPE" "NLRP14 WILD-TYPE"   "NLRP14 MUTATED" "NLRP14 WILD-TYPE" 
      TCGA-05-4434       TCGA-05-5420       TCGA-05-5423       TCGA-05-5425 
"NLRP14 WILD-TYPE" "NLRP14 WILD-TYPE" "NLRP14 WILD-TYPE" "NLRP14 WILD-TYPE" 
      TCGA-05-5429       TCGA-05-5715       TCGA-35-3615       TCGA-35-4122 
"NLRP14 WILD-TYPE" "NLRP14 WILD-TYPE"   "NLRP14 MUTATED" "NLRP14 WILD-TYPE" 
      TCGA-35-4123       TCGA-35-5375       TCGA-38-4625       TCGA-38-4626 
"NLRP14 WILD-TYPE"   "NLRP14 MUTATED" "NLRP14 WILD-TYPE" "NLRP14 WILD-TYPE" 
      TCGA-38-4627       TCGA-38-4628       TCGA-38-4629       TCGA-38-4630 
"NLRP14 WILD-TYPE"   "NLRP14 MUTATED" "NLRP14 WILD-TYPE" "NLRP14 WILD-TYPE" 
      TCGA-38-4631       TCGA-38-4632       TCGA-38-6178       TCGA-44-2655 
  "NLRP14 MUTATED" "NLRP14 WILD-TYPE" "NLRP14 WILD-TYPE" "NLRP14 WILD-TYPE" 
      TCGA-44-2656       TCGA-44-2657       TCGA-44-2659       TCGA-44-2661 
  "NLRP14 MUTATED" "NLRP14 WILD-TYPE"   "NLRP14 MUTATED" "NLRP14 WILD-TYPE" 
      TCGA-44-2662       TCGA-44-2665       TCGA-44-2666       TCGA-44-2668 
"NLRP14 WILD-TYPE" "NLRP14 WILD-TYPE" "NLRP14 WILD-TYPE" "NLRP14 WILD-TYPE" 
      TCGA-44-3396       TCGA-44-3398       TCGA-44-3918       TCGA-44-3919 
  "NLRP14 MUTATED" "NLRP14 WILD-TYPE" "NLRP14 WILD-TYPE" "NLRP14 WILD-TYPE" 
      TCGA-44-4112       TCGA-44-5643       TCGA-44-5645       TCGA-44-6144 
"NLRP14 WILD-TYPE" "NLRP14 WILD-TYPE" "NLRP14 WILD-TYPE" "NLRP14 WILD-TYPE" 
      TCGA-44-6145       TCGA-44-6146       TCGA-44-6147       TCGA-44-6148 
"NLRP14 WILD-TYPE" "NLRP14 WILD-TYPE" "NLRP14 WILD-TYPE" "NLRP14 WILD-TYPE" 
      TCGA-44-6774       TCGA-44-6775       TCGA-44-6776       TCGA-44-6777 
"NLRP14 WILD-TYPE" "NLRP14 WILD-TYPE" "NLRP14 WILD-TYPE" "NLRP14 WILD-TYPE" 
      TCGA-44-6778       TCGA-44-6779       TCGA-49-4486       TCGA-49-4487 
"NLRP14 WILD-TYPE" "NLRP14 WILD-TYPE" "NLRP14 WILD-TYPE" "NLRP14 WILD-TYPE" 
      TCGA-49-4488       TCGA-49-4490       TCGA-49-4494       TCGA-49-4501 
"NLRP14 WILD-TYPE" "NLRP14 WILD-TYPE"   "NLRP14 MUTATED" "NLRP14 WILD-TYPE" 
      TCGA-49-4505       TCGA-49-4506       TCGA-49-4507       TCGA-49-4510 
"NLRP14 WILD-TYPE"   "NLRP14 MUTATED" "NLRP14 WILD-TYPE" "NLRP14 WILD-TYPE" 
      TCGA-49-4512       TCGA-49-4514       TCGA-49-6742       TCGA-49-6743 
"NLRP14 WILD-TYPE" "NLRP14 WILD-TYPE" "NLRP14 WILD-TYPE" "NLRP14 WILD-TYPE" 
      TCGA-49-6744       TCGA-49-6745       TCGA-50-5044       TCGA-50-5045 
"NLRP14 WILD-TYPE" "NLRP14 WILD-TYPE" "NLRP14 WILD-TYPE" "NLRP14 WILD-TYPE" 
      TCGA-50-5049       TCGA-50-5051       TCGA-50-5055       TCGA-50-5066 
"NLRP14 WILD-TYPE" "NLRP14 WILD-TYPE" "NLRP14 WILD-TYPE" "NLRP14 WILD-TYPE" 
      TCGA-50-5068       TCGA-50-5072       TCGA-50-5930       TCGA-50-5931 
"NLRP14 WILD-TYPE" "NLRP14 WILD-TYPE" "NLRP14 WILD-TYPE" "NLRP14 WILD-TYPE" 
      TCGA-50-5932       TCGA-50-5933       TCGA-50-5935       TCGA-50-5936 
"NLRP14 WILD-TYPE" "NLRP14 WILD-TYPE" "NLRP14 WILD-TYPE" "NLRP14 WILD-TYPE" 
      TCGA-50-5939       TCGA-50-5941       TCGA-50-5942       TCGA-50-5944 
"NLRP14 WILD-TYPE"   "NLRP14 MUTATED" "NLRP14 WILD-TYPE" "NLRP14 WILD-TYPE" 
      TCGA-50-5946       TCGA-50-6590       TCGA-50-6591       TCGA-50-6592 
"NLRP14 WILD-TYPE" "NLRP14 WILD-TYPE" "NLRP14 WILD-TYPE"   "NLRP14 MUTATED" 
      TCGA-50-6593       TCGA-50-6594       TCGA-50-6595       TCGA-50-6597 
"NLRP14 WILD-TYPE" "NLRP14 WILD-TYPE" "NLRP14 WILD-TYPE" "NLRP14 WILD-TYPE" 
      TCGA-55-1592       TCGA-55-1594       TCGA-55-1595       TCGA-55-1596 
"NLRP14 WILD-TYPE" "NLRP14 WILD-TYPE" "NLRP14 WILD-TYPE" "NLRP14 WILD-TYPE" 
      TCGA-55-5899       TCGA-55-6543       TCGA-55-6642       TCGA-55-6712 
  "NLRP14 MUTATED" "NLRP14 WILD-TYPE" "NLRP14 WILD-TYPE" "NLRP14 WILD-TYPE" 
      TCGA-64-1676       TCGA-64-1677       TCGA-64-1678       TCGA-64-1680 
"NLRP14 WILD-TYPE" "NLRP14 WILD-TYPE" "NLRP14 WILD-TYPE" "NLRP14 WILD-TYPE" 
      TCGA-64-5774       TCGA-64-5775       TCGA-64-5778       TCGA-64-5779 
"NLRP14 WILD-TYPE" "NLRP14 WILD-TYPE" "NLRP14 WILD-TYPE" "NLRP14 WILD-TYPE" 
      TCGA-64-5781       TCGA-64-5815       TCGA-67-3770       TCGA-67-3771 
"NLRP14 WILD-TYPE" "NLRP14 WILD-TYPE" "NLRP14 WILD-TYPE"   "NLRP14 MUTATED" 
      TCGA-67-3772       TCGA-67-3773       TCGA-67-3774       TCGA-67-6215 
"NLRP14 WILD-TYPE" "NLRP14 WILD-TYPE" "NLRP14 WILD-TYPE" "NLRP14 WILD-TYPE" 
      TCGA-67-6216       TCGA-67-6217       TCGA-71-6725       TCGA-73-4658 
"NLRP14 WILD-TYPE" "NLRP14 WILD-TYPE" "NLRP14 WILD-TYPE" "NLRP14 WILD-TYPE" 
      TCGA-73-4659       TCGA-73-4662       TCGA-73-4666       TCGA-73-4668 
"NLRP14 WILD-TYPE" "NLRP14 WILD-TYPE" "NLRP14 WILD-TYPE" "NLRP14 WILD-TYPE" 
      TCGA-73-4670       TCGA-73-4675       TCGA-73-4676       TCGA-73-4677 
"NLRP14 WILD-TYPE" "NLRP14 WILD-TYPE" "NLRP14 WILD-TYPE" "NLRP14 WILD-TYPE" 
      TCGA-91-6828       TCGA-91-6829       TCGA-91-6831       TCGA-91-6835 
"NLRP14 WILD-TYPE" "NLRP14 WILD-TYPE" "NLRP14 WILD-TYPE" "NLRP14 WILD-TYPE" 
      TCGA-91-6836 
"NLRP14 WILD-TYPE" 
[1] "hr=" "1.6"
D159V2, continuous
D159V3, binary
[1] "tbl2"
                  cls
clus               [,1] [,2]
  NLRP14 MUTATED      9    9
  NLRP14 WILD-TYPE   84   70
        clus
vv       NLRP14 MUTATED NLRP14 WILD-TYPE
  FEMALE              9               84
  MALE                9               70
D159V4, continuous
[1] "Remove cluster labels:" "NLRP14 MUTATED"        
clus
  NLRP14 MUTATED NLRP14 WILD-TYPE 
               1               11 
      TCGA-35-4122       TCGA-35-4123       TCGA-64-1677       TCGA-64-5778 
"NLRP14 WILD-TYPE" "NLRP14 WILD-TYPE" "NLRP14 WILD-TYPE" "NLRP14 WILD-TYPE" 
      TCGA-71-6725       TCGA-73-4659       TCGA-73-4662       TCGA-73-4666 
"NLRP14 WILD-TYPE" "NLRP14 WILD-TYPE" "NLRP14 WILD-TYPE" "NLRP14 WILD-TYPE" 
      TCGA-73-4668       TCGA-73-4676       TCGA-75-5122 
"NLRP14 WILD-TYPE" "NLRP14 WILD-TYPE" "NLRP14 WILD-TYPE" 
D159V5, multiclass
D159V6, multiclass
    clus
vv   NLRP14 MUTATED NLRP14 WILD-TYPE
  T1              3               38
  T2             12               96
  T3              2               12
  T4              1                7
D159V7, multiclass
       clus
vv      NLRP14 MUTATED NLRP14 WILD-TYPE
  N0                 7               88
  N1                 7               30
  N2+N3              4               31
D159V8, multiclass
    clus
vv   NLRP14 MUTATED NLRP14 WILD-TYPE
  M0             17              120
  M1              0                9
  MX              1               21
D159V9, multiclass
     clus
vv    NLRP14 MUTATED NLRP14 WILD-TYPE
  I                7               81
  II               6               27
  III              5               34
  IV               0                9
D159V10, binary
[1] "tbl2"
                  cls
clus               [,1] [,2]
  NLRP14 MUTATED      0   18
  NLRP14 WILD-TYPE   16  138
     clus
vv    NLRP14 MUTATED NLRP14 WILD-TYPE
  NO               0               16
  YES             18              138
D159V11, continuous
D159V12, continuous
D159V13, multiclass
                                             clus
vv                                            NLRP14 MUTATED NLRP14 WILD-TYPE
  CURRENT REFORMED SMOKER FOR < OR = 15 YEARS              7               55
  CURRENT REFORMED SMOKER FOR > 15 YEARS                   2               44
  CURRENT SMOKER                                           7               21
  LIFELONG NON-SMOKER                                      2               22
D159V14, continuous

Clustering(160) Variable = OR51A7 MUTATION ANALYSIS
D160V1, survival
                  sevent
clus2               0  1
  OR51A7 MUTATED    5  1
  OR51A7 WILD-TYPE 94 49
  OR51A7 MUTATED OR51A7 WILD-TYPE 
               6              143 
  OR51A7 MUTATED OR51A7 WILD-TYPE 
               1               49 
$`OR51A7 MUTATED`
TCGA-05-4382 TCGA-44-3918 TCGA-50-5933 TCGA-50-6597 TCGA-67-6217 TCGA-73-4662 
       19.92         6.44        77.88        33.37        13.87        29.95 

$`OR51A7 WILD-TYPE`
TCGA-05-4249 TCGA-05-4250 TCGA-05-4384 TCGA-05-4390 TCGA-05-4396 TCGA-05-4397 
       38.07         3.98        14.01        37.02         9.96        24.03 
TCGA-05-4398 TCGA-05-4402 TCGA-05-4405 TCGA-05-4415 TCGA-05-4417 TCGA-05-4418 
       47.05         8.02        20.05         2.96        14.93         8.98 
TCGA-05-4420 TCGA-05-4424 TCGA-05-4426 TCGA-05-4427 TCGA-05-4430 TCGA-05-4432 
       29.95        30.02        26.01        26.01        25.02        25.02 
TCGA-05-4433 TCGA-05-4434 TCGA-05-5420 TCGA-05-5423 TCGA-05-5425 TCGA-05-5429 
       24.00        15.02         1.02         4.96         2.96         0.99 
TCGA-05-5715 TCGA-35-3615 TCGA-35-4122 TCGA-35-4123 TCGA-35-5375 TCGA-38-4625 
        2.04         0.46         7.36         5.95         8.68        47.61 
TCGA-38-4626 TCGA-38-4627 TCGA-38-4628 TCGA-38-4629 TCGA-38-4630 TCGA-38-4631 
       85.32        37.71        49.02        28.37        35.28        11.64 
TCGA-38-4632 TCGA-38-6178 TCGA-44-2655 TCGA-44-2656 TCGA-44-2657 TCGA-44-2659 
       44.61         5.19        18.87        19.10        13.15        17.39 
TCGA-44-2661 TCGA-44-2662 TCGA-44-2665 TCGA-44-2666 TCGA-44-2668 TCGA-44-3396 
        3.39        15.78        13.15         3.19         8.09        10.22 
TCGA-44-3398 TCGA-44-3919 TCGA-44-4112 TCGA-44-5643 TCGA-44-5645 TCGA-44-6144 
        8.32         6.21         4.60         3.48         6.84         0.30 
TCGA-44-6145 TCGA-44-6146 TCGA-44-6147 TCGA-44-6148 TCGA-44-6774 TCGA-44-6775 
        3.35         9.93         7.76         3.12         5.42         2.70 
TCGA-44-6776 TCGA-44-6777 TCGA-44-6778 TCGA-44-6779 TCGA-49-4486 TCGA-49-4487 
       63.72        32.45        36.49        16.41        76.21        28.11 
TCGA-49-4488 TCGA-49-4490 TCGA-49-4494 TCGA-49-4501 TCGA-49-4505 TCGA-49-4506 
       28.57        12.66        35.54        46.72        14.07        32.84 
TCGA-49-4507 TCGA-49-4510 TCGA-49-4512 TCGA-49-4514 TCGA-49-6742 TCGA-49-6743 
        8.81        29.46        29.75        43.20        15.02        12.13 
TCGA-49-6744 TCGA-49-6745 TCGA-50-5044 TCGA-50-5045 TCGA-50-5049 TCGA-50-5051 
       12.99         4.93        20.48        71.47        48.82        14.96 
TCGA-50-5055 TCGA-50-5066 TCGA-50-5068 TCGA-50-5072 TCGA-50-5930 TCGA-50-5931 
       25.81         9.76        49.28         8.05         9.27         8.78 
TCGA-50-5932 TCGA-50-5935 TCGA-50-5936 TCGA-50-5939 TCGA-50-5941 TCGA-50-5942 
       35.87        21.47         8.45        15.12         9.37         4.44 
TCGA-50-5944 TCGA-50-5946 TCGA-50-6590 TCGA-50-6591 TCGA-50-6592 TCGA-50-6593 
       12.26        11.47        42.31         3.88        25.51        11.05 
TCGA-50-6594 TCGA-50-6595 TCGA-55-1592 TCGA-55-1594 TCGA-55-1595 TCGA-55-1596 
       12.16         6.21        23.05        38.73        48.62        45.17 
TCGA-55-5899 TCGA-55-6543 TCGA-55-6642 TCGA-55-6712 TCGA-64-1676 TCGA-64-1677 
        2.86         0.07        32.61         0.79        56.81        20.65 
TCGA-64-1678 TCGA-64-1680 TCGA-64-5774 TCGA-64-5775 TCGA-64-5778 TCGA-64-5779 
       39.09        37.02        83.84         0.10        30.44        16.67 
TCGA-64-5781 TCGA-64-5815 TCGA-67-3770 TCGA-67-3771 TCGA-67-3772 TCGA-67-3773 
       39.52         7.33         0.99         1.97         0.59         2.04 
TCGA-67-3774 TCGA-67-6215 TCGA-67-6216 TCGA-71-6725 TCGA-73-4658 TCGA-73-4659 
        0.59         0.89         0.69         2.01        52.57        23.38 
TCGA-73-4666 TCGA-73-4668 TCGA-73-4670 TCGA-73-4675 TCGA-73-4676 TCGA-73-4677 
       20.28        15.35         0.46         1.32         4.01         1.25 
TCGA-91-6828 TCGA-91-6829 TCGA-91-6831 TCGA-91-6835 TCGA-91-6836 
        1.22        41.33         1.28         1.15         0.36 

  OR51A7 MUTATED OR51A7 WILD-TYPE 
            6.44             0.07 
  OR51A7 MUTATED OR51A7 WILD-TYPE 
           77.88            85.32 
  OR51A7 MUTATED OR51A7 WILD-TYPE 
          24.935           13.150 
[1] "6.4 - 77.9 (24.9)" "0.1 - 85.3 (13.2)"
      TCGA-05-4249       TCGA-05-4250       TCGA-05-4382       TCGA-05-4384 
"OR51A7 WILD-TYPE" "OR51A7 WILD-TYPE"   "OR51A7 MUTATED" "OR51A7 WILD-TYPE" 
      TCGA-05-4390       TCGA-05-4396       TCGA-05-4397       TCGA-05-4398 
"OR51A7 WILD-TYPE" "OR51A7 WILD-TYPE" "OR51A7 WILD-TYPE" "OR51A7 WILD-TYPE" 
      TCGA-05-4402       TCGA-05-4405       TCGA-05-4415       TCGA-05-4417 
"OR51A7 WILD-TYPE" "OR51A7 WILD-TYPE" "OR51A7 WILD-TYPE" "OR51A7 WILD-TYPE" 
      TCGA-05-4418       TCGA-05-4420       TCGA-05-4424       TCGA-05-4426 
"OR51A7 WILD-TYPE" "OR51A7 WILD-TYPE" "OR51A7 WILD-TYPE" "OR51A7 WILD-TYPE" 
      TCGA-05-4427       TCGA-05-4430       TCGA-05-4432       TCGA-05-4433 
"OR51A7 WILD-TYPE" "OR51A7 WILD-TYPE" "OR51A7 WILD-TYPE" "OR51A7 WILD-TYPE" 
      TCGA-05-4434       TCGA-05-5420       TCGA-05-5423       TCGA-05-5425 
"OR51A7 WILD-TYPE" "OR51A7 WILD-TYPE" "OR51A7 WILD-TYPE" "OR51A7 WILD-TYPE" 
      TCGA-05-5429       TCGA-05-5715       TCGA-35-3615       TCGA-35-4122 
"OR51A7 WILD-TYPE" "OR51A7 WILD-TYPE" "OR51A7 WILD-TYPE" "OR51A7 WILD-TYPE" 
      TCGA-35-4123       TCGA-35-5375       TCGA-38-4625       TCGA-38-4626 
"OR51A7 WILD-TYPE" "OR51A7 WILD-TYPE" "OR51A7 WILD-TYPE" "OR51A7 WILD-TYPE" 
      TCGA-38-4627       TCGA-38-4628       TCGA-38-4629       TCGA-38-4630 
"OR51A7 WILD-TYPE" "OR51A7 WILD-TYPE" "OR51A7 WILD-TYPE" "OR51A7 WILD-TYPE" 
      TCGA-38-4631       TCGA-38-4632       TCGA-38-6178       TCGA-44-2655 
"OR51A7 WILD-TYPE" "OR51A7 WILD-TYPE" "OR51A7 WILD-TYPE" "OR51A7 WILD-TYPE" 
      TCGA-44-2656       TCGA-44-2657       TCGA-44-2659       TCGA-44-2661 
"OR51A7 WILD-TYPE" "OR51A7 WILD-TYPE" "OR51A7 WILD-TYPE" "OR51A7 WILD-TYPE" 
      TCGA-44-2662       TCGA-44-2665       TCGA-44-2666       TCGA-44-2668 
"OR51A7 WILD-TYPE" "OR51A7 WILD-TYPE" "OR51A7 WILD-TYPE" "OR51A7 WILD-TYPE" 
      TCGA-44-3396       TCGA-44-3398       TCGA-44-3918       TCGA-44-3919 
"OR51A7 WILD-TYPE" "OR51A7 WILD-TYPE"   "OR51A7 MUTATED" "OR51A7 WILD-TYPE" 
      TCGA-44-4112       TCGA-44-5643       TCGA-44-5645       TCGA-44-6144 
"OR51A7 WILD-TYPE" "OR51A7 WILD-TYPE" "OR51A7 WILD-TYPE" "OR51A7 WILD-TYPE" 
      TCGA-44-6145       TCGA-44-6146       TCGA-44-6147       TCGA-44-6148 
"OR51A7 WILD-TYPE" "OR51A7 WILD-TYPE" "OR51A7 WILD-TYPE" "OR51A7 WILD-TYPE" 
      TCGA-44-6774       TCGA-44-6775       TCGA-44-6776       TCGA-44-6777 
"OR51A7 WILD-TYPE" "OR51A7 WILD-TYPE" "OR51A7 WILD-TYPE" "OR51A7 WILD-TYPE" 
      TCGA-44-6778       TCGA-44-6779       TCGA-49-4486       TCGA-49-4487 
"OR51A7 WILD-TYPE" "OR51A7 WILD-TYPE" "OR51A7 WILD-TYPE" "OR51A7 WILD-TYPE" 
      TCGA-49-4488       TCGA-49-4490       TCGA-49-4494       TCGA-49-4501 
"OR51A7 WILD-TYPE" "OR51A7 WILD-TYPE" "OR51A7 WILD-TYPE" "OR51A7 WILD-TYPE" 
      TCGA-49-4505       TCGA-49-4506       TCGA-49-4507       TCGA-49-4510 
"OR51A7 WILD-TYPE" "OR51A7 WILD-TYPE" "OR51A7 WILD-TYPE" "OR51A7 WILD-TYPE" 
      TCGA-49-4512       TCGA-49-4514       TCGA-49-6742       TCGA-49-6743 
"OR51A7 WILD-TYPE" "OR51A7 WILD-TYPE" "OR51A7 WILD-TYPE" "OR51A7 WILD-TYPE" 
      TCGA-49-6744       TCGA-49-6745       TCGA-50-5044       TCGA-50-5045 
"OR51A7 WILD-TYPE" "OR51A7 WILD-TYPE" "OR51A7 WILD-TYPE" "OR51A7 WILD-TYPE" 
      TCGA-50-5049       TCGA-50-5051       TCGA-50-5055       TCGA-50-5066 
"OR51A7 WILD-TYPE" "OR51A7 WILD-TYPE" "OR51A7 WILD-TYPE" "OR51A7 WILD-TYPE" 
      TCGA-50-5068       TCGA-50-5072       TCGA-50-5930       TCGA-50-5931 
"OR51A7 WILD-TYPE" "OR51A7 WILD-TYPE" "OR51A7 WILD-TYPE" "OR51A7 WILD-TYPE" 
      TCGA-50-5932       TCGA-50-5933       TCGA-50-5935       TCGA-50-5936 
"OR51A7 WILD-TYPE"   "OR51A7 MUTATED" "OR51A7 WILD-TYPE" "OR51A7 WILD-TYPE" 
      TCGA-50-5939       TCGA-50-5941       TCGA-50-5942       TCGA-50-5944 
"OR51A7 WILD-TYPE" "OR51A7 WILD-TYPE" "OR51A7 WILD-TYPE" "OR51A7 WILD-TYPE" 
      TCGA-50-5946       TCGA-50-6590       TCGA-50-6591       TCGA-50-6592 
"OR51A7 WILD-TYPE" "OR51A7 WILD-TYPE" "OR51A7 WILD-TYPE" "OR51A7 WILD-TYPE" 
      TCGA-50-6593       TCGA-50-6594       TCGA-50-6595       TCGA-50-6597 
"OR51A7 WILD-TYPE" "OR51A7 WILD-TYPE" "OR51A7 WILD-TYPE"   "OR51A7 MUTATED" 
      TCGA-55-1592       TCGA-55-1594       TCGA-55-1595       TCGA-55-1596 
"OR51A7 WILD-TYPE" "OR51A7 WILD-TYPE" "OR51A7 WILD-TYPE" "OR51A7 WILD-TYPE" 
      TCGA-55-5899       TCGA-55-6543       TCGA-55-6642       TCGA-55-6712 
"OR51A7 WILD-TYPE" "OR51A7 WILD-TYPE" "OR51A7 WILD-TYPE" "OR51A7 WILD-TYPE" 
      TCGA-64-1676       TCGA-64-1677       TCGA-64-1678       TCGA-64-1680 
"OR51A7 WILD-TYPE" "OR51A7 WILD-TYPE" "OR51A7 WILD-TYPE" "OR51A7 WILD-TYPE" 
      TCGA-64-5774       TCGA-64-5775       TCGA-64-5778       TCGA-64-5779 
"OR51A7 WILD-TYPE" "OR51A7 WILD-TYPE" "OR51A7 WILD-TYPE" "OR51A7 WILD-TYPE" 
      TCGA-64-5781       TCGA-64-5815       TCGA-67-3770       TCGA-67-3771 
"OR51A7 WILD-TYPE" "OR51A7 WILD-TYPE" "OR51A7 WILD-TYPE" "OR51A7 WILD-TYPE" 
      TCGA-67-3772       TCGA-67-3773       TCGA-67-3774       TCGA-67-6215 
"OR51A7 WILD-TYPE" "OR51A7 WILD-TYPE" "OR51A7 WILD-TYPE" "OR51A7 WILD-TYPE" 
      TCGA-67-6216       TCGA-67-6217       TCGA-71-6725       TCGA-73-4658 
"OR51A7 WILD-TYPE"   "OR51A7 MUTATED" "OR51A7 WILD-TYPE" "OR51A7 WILD-TYPE" 
      TCGA-73-4659       TCGA-73-4662       TCGA-73-4666       TCGA-73-4668 
"OR51A7 WILD-TYPE"   "OR51A7 MUTATED" "OR51A7 WILD-TYPE" "OR51A7 WILD-TYPE" 
      TCGA-73-4670       TCGA-73-4675       TCGA-73-4676       TCGA-73-4677 
"OR51A7 WILD-TYPE" "OR51A7 WILD-TYPE" "OR51A7 WILD-TYPE" "OR51A7 WILD-TYPE" 
      TCGA-91-6828       TCGA-91-6829       TCGA-91-6831       TCGA-91-6835 
"OR51A7 WILD-TYPE" "OR51A7 WILD-TYPE" "OR51A7 WILD-TYPE" "OR51A7 WILD-TYPE" 
      TCGA-91-6836 
"OR51A7 WILD-TYPE" 
      TCGA-05-4249       TCGA-05-4250       TCGA-05-4382       TCGA-05-4384 
"OR51A7 WILD-TYPE" "OR51A7 WILD-TYPE"   "OR51A7 MUTATED" "OR51A7 WILD-TYPE" 
      TCGA-05-4390       TCGA-05-4396       TCGA-05-4397       TCGA-05-4398 
"OR51A7 WILD-TYPE" "OR51A7 WILD-TYPE" "OR51A7 WILD-TYPE" "OR51A7 WILD-TYPE" 
      TCGA-05-4402       TCGA-05-4405       TCGA-05-4415       TCGA-05-4417 
"OR51A7 WILD-TYPE" "OR51A7 WILD-TYPE" "OR51A7 WILD-TYPE" "OR51A7 WILD-TYPE" 
      TCGA-05-4418       TCGA-05-4420       TCGA-05-4424       TCGA-05-4426 
"OR51A7 WILD-TYPE" "OR51A7 WILD-TYPE" "OR51A7 WILD-TYPE" "OR51A7 WILD-TYPE" 
      TCGA-05-4427       TCGA-05-4430       TCGA-05-4432       TCGA-05-4433 
"OR51A7 WILD-TYPE" "OR51A7 WILD-TYPE" "OR51A7 WILD-TYPE" "OR51A7 WILD-TYPE" 
      TCGA-05-4434       TCGA-05-5420       TCGA-05-5423       TCGA-05-5425 
"OR51A7 WILD-TYPE" "OR51A7 WILD-TYPE" "OR51A7 WILD-TYPE" "OR51A7 WILD-TYPE" 
      TCGA-05-5429       TCGA-05-5715       TCGA-35-3615       TCGA-35-4122 
"OR51A7 WILD-TYPE" "OR51A7 WILD-TYPE" "OR51A7 WILD-TYPE" "OR51A7 WILD-TYPE" 
      TCGA-35-4123       TCGA-35-5375       TCGA-38-4625       TCGA-38-4626 
"OR51A7 WILD-TYPE" "OR51A7 WILD-TYPE" "OR51A7 WILD-TYPE" "OR51A7 WILD-TYPE" 
      TCGA-38-4627       TCGA-38-4628       TCGA-38-4629       TCGA-38-4630 
"OR51A7 WILD-TYPE" "OR51A7 WILD-TYPE" "OR51A7 WILD-TYPE" "OR51A7 WILD-TYPE" 
      TCGA-38-4631       TCGA-38-4632       TCGA-38-6178       TCGA-44-2655 
"OR51A7 WILD-TYPE" "OR51A7 WILD-TYPE" "OR51A7 WILD-TYPE" "OR51A7 WILD-TYPE" 
      TCGA-44-2656       TCGA-44-2657       TCGA-44-2659       TCGA-44-2661 
"OR51A7 WILD-TYPE" "OR51A7 WILD-TYPE" "OR51A7 WILD-TYPE" "OR51A7 WILD-TYPE" 
      TCGA-44-2662       TCGA-44-2665       TCGA-44-2666       TCGA-44-2668 
"OR51A7 WILD-TYPE" "OR51A7 WILD-TYPE" "OR51A7 WILD-TYPE" "OR51A7 WILD-TYPE" 
      TCGA-44-3396       TCGA-44-3398       TCGA-44-3918       TCGA-44-3919 
"OR51A7 WILD-TYPE" "OR51A7 WILD-TYPE"   "OR51A7 MUTATED" "OR51A7 WILD-TYPE" 
      TCGA-44-4112       TCGA-44-5643       TCGA-44-5645       TCGA-44-6144 
"OR51A7 WILD-TYPE" "OR51A7 WILD-TYPE" "OR51A7 WILD-TYPE" "OR51A7 WILD-TYPE" 
      TCGA-44-6145       TCGA-44-6146       TCGA-44-6147       TCGA-44-6148 
"OR51A7 WILD-TYPE" "OR51A7 WILD-TYPE" "OR51A7 WILD-TYPE" "OR51A7 WILD-TYPE" 
      TCGA-44-6774       TCGA-44-6775       TCGA-44-6776       TCGA-44-6777 
"OR51A7 WILD-TYPE" "OR51A7 WILD-TYPE" "OR51A7 WILD-TYPE" "OR51A7 WILD-TYPE" 
      TCGA-44-6778       TCGA-44-6779       TCGA-49-4486       TCGA-49-4487 
"OR51A7 WILD-TYPE" "OR51A7 WILD-TYPE" "OR51A7 WILD-TYPE" "OR51A7 WILD-TYPE" 
      TCGA-49-4488       TCGA-49-4490       TCGA-49-4494       TCGA-49-4501 
"OR51A7 WILD-TYPE" "OR51A7 WILD-TYPE" "OR51A7 WILD-TYPE" "OR51A7 WILD-TYPE" 
      TCGA-49-4505       TCGA-49-4506       TCGA-49-4507       TCGA-49-4510 
"OR51A7 WILD-TYPE" "OR51A7 WILD-TYPE" "OR51A7 WILD-TYPE" "OR51A7 WILD-TYPE" 
      TCGA-49-4512       TCGA-49-4514       TCGA-49-6742       TCGA-49-6743 
"OR51A7 WILD-TYPE" "OR51A7 WILD-TYPE" "OR51A7 WILD-TYPE" "OR51A7 WILD-TYPE" 
      TCGA-49-6744       TCGA-49-6745       TCGA-50-5044       TCGA-50-5045 
"OR51A7 WILD-TYPE" "OR51A7 WILD-TYPE" "OR51A7 WILD-TYPE" "OR51A7 WILD-TYPE" 
      TCGA-50-5049       TCGA-50-5051       TCGA-50-5055       TCGA-50-5066 
"OR51A7 WILD-TYPE" "OR51A7 WILD-TYPE" "OR51A7 WILD-TYPE" "OR51A7 WILD-TYPE" 
      TCGA-50-5068       TCGA-50-5072       TCGA-50-5930       TCGA-50-5931 
"OR51A7 WILD-TYPE" "OR51A7 WILD-TYPE" "OR51A7 WILD-TYPE" "OR51A7 WILD-TYPE" 
      TCGA-50-5932       TCGA-50-5933       TCGA-50-5935       TCGA-50-5936 
"OR51A7 WILD-TYPE"   "OR51A7 MUTATED" "OR51A7 WILD-TYPE" "OR51A7 WILD-TYPE" 
      TCGA-50-5939       TCGA-50-5941       TCGA-50-5942       TCGA-50-5944 
"OR51A7 WILD-TYPE" "OR51A7 WILD-TYPE" "OR51A7 WILD-TYPE" "OR51A7 WILD-TYPE" 
      TCGA-50-5946       TCGA-50-6590       TCGA-50-6591       TCGA-50-6592 
"OR51A7 WILD-TYPE" "OR51A7 WILD-TYPE" "OR51A7 WILD-TYPE" "OR51A7 WILD-TYPE" 
      TCGA-50-6593       TCGA-50-6594       TCGA-50-6595       TCGA-50-6597 
"OR51A7 WILD-TYPE" "OR51A7 WILD-TYPE" "OR51A7 WILD-TYPE"   "OR51A7 MUTATED" 
      TCGA-55-1592       TCGA-55-1594       TCGA-55-1595       TCGA-55-1596 
"OR51A7 WILD-TYPE" "OR51A7 WILD-TYPE" "OR51A7 WILD-TYPE" "OR51A7 WILD-TYPE" 
      TCGA-55-5899       TCGA-55-6543       TCGA-55-6642       TCGA-55-6712 
"OR51A7 WILD-TYPE" "OR51A7 WILD-TYPE" "OR51A7 WILD-TYPE" "OR51A7 WILD-TYPE" 
      TCGA-64-1676       TCGA-64-1677       TCGA-64-1678       TCGA-64-1680 
"OR51A7 WILD-TYPE" "OR51A7 WILD-TYPE" "OR51A7 WILD-TYPE" "OR51A7 WILD-TYPE" 
      TCGA-64-5774       TCGA-64-5775       TCGA-64-5778       TCGA-64-5779 
"OR51A7 WILD-TYPE" "OR51A7 WILD-TYPE" "OR51A7 WILD-TYPE" "OR51A7 WILD-TYPE" 
      TCGA-64-5781       TCGA-64-5815       TCGA-67-3770       TCGA-67-3771 
"OR51A7 WILD-TYPE" "OR51A7 WILD-TYPE" "OR51A7 WILD-TYPE" "OR51A7 WILD-TYPE" 
      TCGA-67-3772       TCGA-67-3773       TCGA-67-3774       TCGA-67-6215 
"OR51A7 WILD-TYPE" "OR51A7 WILD-TYPE" "OR51A7 WILD-TYPE" "OR51A7 WILD-TYPE" 
      TCGA-67-6216       TCGA-67-6217       TCGA-71-6725       TCGA-73-4658 
"OR51A7 WILD-TYPE"   "OR51A7 MUTATED" "OR51A7 WILD-TYPE" "OR51A7 WILD-TYPE" 
      TCGA-73-4659       TCGA-73-4662       TCGA-73-4666       TCGA-73-4668 
"OR51A7 WILD-TYPE"   "OR51A7 MUTATED" "OR51A7 WILD-TYPE" "OR51A7 WILD-TYPE" 
      TCGA-73-4670       TCGA-73-4675       TCGA-73-4676       TCGA-73-4677 
"OR51A7 WILD-TYPE" "OR51A7 WILD-TYPE" "OR51A7 WILD-TYPE" "OR51A7 WILD-TYPE" 
      TCGA-91-6828       TCGA-91-6829       TCGA-91-6831       TCGA-91-6835 
"OR51A7 WILD-TYPE" "OR51A7 WILD-TYPE" "OR51A7 WILD-TYPE" "OR51A7 WILD-TYPE" 
      TCGA-91-6836 
"OR51A7 WILD-TYPE" 
      TCGA-05-4249       TCGA-05-4250       TCGA-05-4382       TCGA-05-4384 
"OR51A7 WILD-TYPE" "OR51A7 WILD-TYPE"   "OR51A7 MUTATED" "OR51A7 WILD-TYPE" 
      TCGA-05-4390       TCGA-05-4396       TCGA-05-4397       TCGA-05-4398 
"OR51A7 WILD-TYPE" "OR51A7 WILD-TYPE" "OR51A7 WILD-TYPE" "OR51A7 WILD-TYPE" 
      TCGA-05-4402       TCGA-05-4405       TCGA-05-4415       TCGA-05-4417 
"OR51A7 WILD-TYPE" "OR51A7 WILD-TYPE" "OR51A7 WILD-TYPE" "OR51A7 WILD-TYPE" 
      TCGA-05-4418       TCGA-05-4420       TCGA-05-4424       TCGA-05-4426 
"OR51A7 WILD-TYPE" "OR51A7 WILD-TYPE" "OR51A7 WILD-TYPE" "OR51A7 WILD-TYPE" 
      TCGA-05-4427       TCGA-05-4430       TCGA-05-4432       TCGA-05-4433 
"OR51A7 WILD-TYPE" "OR51A7 WILD-TYPE" "OR51A7 WILD-TYPE" "OR51A7 WILD-TYPE" 
      TCGA-05-4434       TCGA-05-5420       TCGA-05-5423       TCGA-05-5425 
"OR51A7 WILD-TYPE" "OR51A7 WILD-TYPE" "OR51A7 WILD-TYPE" "OR51A7 WILD-TYPE" 
      TCGA-05-5429       TCGA-05-5715       TCGA-35-3615       TCGA-35-4122 
"OR51A7 WILD-TYPE" "OR51A7 WILD-TYPE" "OR51A7 WILD-TYPE" "OR51A7 WILD-TYPE" 
      TCGA-35-4123       TCGA-35-5375       TCGA-38-4625       TCGA-38-4626 
"OR51A7 WILD-TYPE" "OR51A7 WILD-TYPE" "OR51A7 WILD-TYPE" "OR51A7 WILD-TYPE" 
      TCGA-38-4627       TCGA-38-4628       TCGA-38-4629       TCGA-38-4630 
"OR51A7 WILD-TYPE" "OR51A7 WILD-TYPE" "OR51A7 WILD-TYPE" "OR51A7 WILD-TYPE" 
      TCGA-38-4631       TCGA-38-4632       TCGA-38-6178       TCGA-44-2655 
"OR51A7 WILD-TYPE" "OR51A7 WILD-TYPE" "OR51A7 WILD-TYPE" "OR51A7 WILD-TYPE" 
      TCGA-44-2656       TCGA-44-2657       TCGA-44-2659       TCGA-44-2661 
"OR51A7 WILD-TYPE" "OR51A7 WILD-TYPE" "OR51A7 WILD-TYPE" "OR51A7 WILD-TYPE" 
      TCGA-44-2662       TCGA-44-2665       TCGA-44-2666       TCGA-44-2668 
"OR51A7 WILD-TYPE" "OR51A7 WILD-TYPE" "OR51A7 WILD-TYPE" "OR51A7 WILD-TYPE" 
      TCGA-44-3396       TCGA-44-3398       TCGA-44-3918       TCGA-44-3919 
"OR51A7 WILD-TYPE" "OR51A7 WILD-TYPE"   "OR51A7 MUTATED" "OR51A7 WILD-TYPE" 
      TCGA-44-4112       TCGA-44-5643       TCGA-44-5645       TCGA-44-6144 
"OR51A7 WILD-TYPE" "OR51A7 WILD-TYPE" "OR51A7 WILD-TYPE" "OR51A7 WILD-TYPE" 
      TCGA-44-6145       TCGA-44-6146       TCGA-44-6147       TCGA-44-6148 
"OR51A7 WILD-TYPE" "OR51A7 WILD-TYPE" "OR51A7 WILD-TYPE" "OR51A7 WILD-TYPE" 
      TCGA-44-6774       TCGA-44-6775       TCGA-44-6776       TCGA-44-6777 
"OR51A7 WILD-TYPE" "OR51A7 WILD-TYPE" "OR51A7 WILD-TYPE" "OR51A7 WILD-TYPE" 
      TCGA-44-6778       TCGA-44-6779       TCGA-49-4486       TCGA-49-4487 
"OR51A7 WILD-TYPE" "OR51A7 WILD-TYPE" "OR51A7 WILD-TYPE" "OR51A7 WILD-TYPE" 
      TCGA-49-4488       TCGA-49-4490       TCGA-49-4494       TCGA-49-4501 
"OR51A7 WILD-TYPE" "OR51A7 WILD-TYPE" "OR51A7 WILD-TYPE" "OR51A7 WILD-TYPE" 
      TCGA-49-4505       TCGA-49-4506       TCGA-49-4507       TCGA-49-4510 
"OR51A7 WILD-TYPE" "OR51A7 WILD-TYPE" "OR51A7 WILD-TYPE" "OR51A7 WILD-TYPE" 
      TCGA-49-4512       TCGA-49-4514       TCGA-49-6742       TCGA-49-6743 
"OR51A7 WILD-TYPE" "OR51A7 WILD-TYPE" "OR51A7 WILD-TYPE" "OR51A7 WILD-TYPE" 
      TCGA-49-6744       TCGA-49-6745       TCGA-50-5044       TCGA-50-5045 
"OR51A7 WILD-TYPE" "OR51A7 WILD-TYPE" "OR51A7 WILD-TYPE" "OR51A7 WILD-TYPE" 
      TCGA-50-5049       TCGA-50-5051       TCGA-50-5055       TCGA-50-5066 
"OR51A7 WILD-TYPE" "OR51A7 WILD-TYPE" "OR51A7 WILD-TYPE" "OR51A7 WILD-TYPE" 
      TCGA-50-5068       TCGA-50-5072       TCGA-50-5930       TCGA-50-5931 
"OR51A7 WILD-TYPE" "OR51A7 WILD-TYPE" "OR51A7 WILD-TYPE" "OR51A7 WILD-TYPE" 
      TCGA-50-5932       TCGA-50-5933       TCGA-50-5935       TCGA-50-5936 
"OR51A7 WILD-TYPE"   "OR51A7 MUTATED" "OR51A7 WILD-TYPE" "OR51A7 WILD-TYPE" 
      TCGA-50-5939       TCGA-50-5941       TCGA-50-5942       TCGA-50-5944 
"OR51A7 WILD-TYPE" "OR51A7 WILD-TYPE" "OR51A7 WILD-TYPE" "OR51A7 WILD-TYPE" 
      TCGA-50-5946       TCGA-50-6590       TCGA-50-6591       TCGA-50-6592 
"OR51A7 WILD-TYPE" "OR51A7 WILD-TYPE" "OR51A7 WILD-TYPE" "OR51A7 WILD-TYPE" 
      TCGA-50-6593       TCGA-50-6594       TCGA-50-6595       TCGA-50-6597 
"OR51A7 WILD-TYPE" "OR51A7 WILD-TYPE" "OR51A7 WILD-TYPE"   "OR51A7 MUTATED" 
      TCGA-55-1592       TCGA-55-1594       TCGA-55-1595       TCGA-55-1596 
"OR51A7 WILD-TYPE" "OR51A7 WILD-TYPE" "OR51A7 WILD-TYPE" "OR51A7 WILD-TYPE" 
      TCGA-55-5899       TCGA-55-6543       TCGA-55-6642       TCGA-55-6712 
"OR51A7 WILD-TYPE" "OR51A7 WILD-TYPE" "OR51A7 WILD-TYPE" "OR51A7 WILD-TYPE" 
      TCGA-64-1676       TCGA-64-1677       TCGA-64-1678       TCGA-64-1680 
"OR51A7 WILD-TYPE" "OR51A7 WILD-TYPE" "OR51A7 WILD-TYPE" "OR51A7 WILD-TYPE" 
      TCGA-64-5774       TCGA-64-5775       TCGA-64-5778       TCGA-64-5779 
"OR51A7 WILD-TYPE" "OR51A7 WILD-TYPE" "OR51A7 WILD-TYPE" "OR51A7 WILD-TYPE" 
      TCGA-64-5781       TCGA-64-5815       TCGA-67-3770       TCGA-67-3771 
"OR51A7 WILD-TYPE" "OR51A7 WILD-TYPE" "OR51A7 WILD-TYPE" "OR51A7 WILD-TYPE" 
      TCGA-67-3772       TCGA-67-3773       TCGA-67-3774       TCGA-67-6215 
"OR51A7 WILD-TYPE" "OR51A7 WILD-TYPE" "OR51A7 WILD-TYPE" "OR51A7 WILD-TYPE" 
      TCGA-67-6216       TCGA-67-6217       TCGA-71-6725       TCGA-73-4658 
"OR51A7 WILD-TYPE"   "OR51A7 MUTATED" "OR51A7 WILD-TYPE" "OR51A7 WILD-TYPE" 
      TCGA-73-4659       TCGA-73-4662       TCGA-73-4666       TCGA-73-4668 
"OR51A7 WILD-TYPE"   "OR51A7 MUTATED" "OR51A7 WILD-TYPE" "OR51A7 WILD-TYPE" 
      TCGA-73-4670       TCGA-73-4675       TCGA-73-4676       TCGA-73-4677 
"OR51A7 WILD-TYPE" "OR51A7 WILD-TYPE" "OR51A7 WILD-TYPE" "OR51A7 WILD-TYPE" 
      TCGA-91-6828       TCGA-91-6829       TCGA-91-6831       TCGA-91-6835 
"OR51A7 WILD-TYPE" "OR51A7 WILD-TYPE" "OR51A7 WILD-TYPE" "OR51A7 WILD-TYPE" 
      TCGA-91-6836 
"OR51A7 WILD-TYPE" 
[1] "hr=" "3.9"
D160V2, continuous
D160V3, binary
[1] "tbl2"
                  cls
clus               [,1] [,2]
  OR51A7 MUTATED      5    2
  OR51A7 WILD-TYPE   88   77
        clus
vv       OR51A7 MUTATED OR51A7 WILD-TYPE
  FEMALE              5               88
  MALE                2               77
D160V4, continuous
[1] "Remove cluster labels:" "OR51A7 MUTATED"        
clus
  OR51A7 MUTATED OR51A7 WILD-TYPE 
               1               11 
      TCGA-35-4122       TCGA-35-4123       TCGA-35-5375       TCGA-64-1677 
"OR51A7 WILD-TYPE" "OR51A7 WILD-TYPE" "OR51A7 WILD-TYPE" "OR51A7 WILD-TYPE" 
      TCGA-64-5778       TCGA-71-6725       TCGA-73-4659       TCGA-73-4666 
"OR51A7 WILD-TYPE" "OR51A7 WILD-TYPE" "OR51A7 WILD-TYPE" "OR51A7 WILD-TYPE" 
      TCGA-73-4668       TCGA-73-4676       TCGA-75-5122 
"OR51A7 WILD-TYPE" "OR51A7 WILD-TYPE" "OR51A7 WILD-TYPE" 
D160V5, multiclass
D160V6, multiclass
    clus
vv   OR51A7 MUTATED OR51A7 WILD-TYPE
  T1              2               39
  T2              4              104
  T3              0               14
  T4              1                7
D160V7, multiclass
       clus
vv      OR51A7 MUTATED OR51A7 WILD-TYPE
  N0                 5               90
  N1                 1               36
  N2+N3              1               34
D160V8, multiclass
    clus
vv   OR51A7 MUTATED OR51A7 WILD-TYPE
  M0              7              130
  M1              0                9
  MX              0               22
D160V9, multiclass
     clus
vv    OR51A7 MUTATED OR51A7 WILD-TYPE
  I                5               83
  II               1               32
  III              1               38
  IV               0                9
D160V10, binary
[1] "tbl2"
                  cls
clus               [,1] [,2]
  OR51A7 MUTATED      2    5
  OR51A7 WILD-TYPE   14  151
     clus
vv    OR51A7 MUTATED OR51A7 WILD-TYPE
  NO               2               14
  YES              5              151
D160V11, continuous
D160V12, continuous
D160V13, multiclass
                                             clus
vv                                            OR51A7 MUTATED OR51A7 WILD-TYPE
  CURRENT REFORMED SMOKER FOR < OR = 15 YEARS              1               61
  CURRENT REFORMED SMOKER FOR > 15 YEARS                   3               43
  CURRENT SMOKER                                           0               28
  LIFELONG NON-SMOKER                                      2               22
D160V14, continuous
[1] "Remove cluster labels:" "OR51A7 MUTATED"        
clus
  OR51A7 MUTATED OR51A7 WILD-TYPE 
               2               66 
      TCGA-05-4384       TCGA-05-4390       TCGA-05-4396       TCGA-05-4405 
"OR51A7 WILD-TYPE" "OR51A7 WILD-TYPE" "OR51A7 WILD-TYPE" "OR51A7 WILD-TYPE" 
      TCGA-05-4410       TCGA-05-4415       TCGA-05-4417       TCGA-05-4424 
"OR51A7 WILD-TYPE" "OR51A7 WILD-TYPE" "OR51A7 WILD-TYPE" "OR51A7 WILD-TYPE" 
      TCGA-05-4427       TCGA-05-4433       TCGA-05-5420       TCGA-05-5423 
"OR51A7 WILD-TYPE" "OR51A7 WILD-TYPE" "OR51A7 WILD-TYPE" "OR51A7 WILD-TYPE" 
      TCGA-05-5425       TCGA-05-5428       TCGA-35-4122       TCGA-35-4123 
"OR51A7 WILD-TYPE" "OR51A7 WILD-TYPE" "OR51A7 WILD-TYPE" "OR51A7 WILD-TYPE" 
      TCGA-35-5375       TCGA-38-4625       TCGA-38-4626       TCGA-44-2655 
"OR51A7 WILD-TYPE" "OR51A7 WILD-TYPE" "OR51A7 WILD-TYPE" "OR51A7 WILD-TYPE" 
      TCGA-44-2656       TCGA-44-2657       TCGA-44-2659       TCGA-44-2662 
"OR51A7 WILD-TYPE" "OR51A7 WILD-TYPE" "OR51A7 WILD-TYPE" "OR51A7 WILD-TYPE" 
      TCGA-44-2666       TCGA-44-2668       TCGA-44-3396       TCGA-44-3398 
"OR51A7 WILD-TYPE" "OR51A7 WILD-TYPE" "OR51A7 WILD-TYPE" "OR51A7 WILD-TYPE" 
      TCGA-44-4112       TCGA-44-5645       TCGA-44-6144       TCGA-44-6145 
"OR51A7 WILD-TYPE" "OR51A7 WILD-TYPE" "OR51A7 WILD-TYPE" "OR51A7 WILD-TYPE" 
      TCGA-44-6147       TCGA-44-6148       TCGA-44-6774       TCGA-44-6775 
"OR51A7 WILD-TYPE" "OR51A7 WILD-TYPE" "OR51A7 WILD-TYPE" "OR51A7 WILD-TYPE" 
      TCGA-44-6776       TCGA-44-6777       TCGA-44-6778       TCGA-44-6779 
"OR51A7 WILD-TYPE" "OR51A7 WILD-TYPE" "OR51A7 WILD-TYPE" "OR51A7 WILD-TYPE" 
      TCGA-49-4486       TCGA-49-4494       TCGA-49-4505       TCGA-55-1592 
"OR51A7 WILD-TYPE" "OR51A7 WILD-TYPE" "OR51A7 WILD-TYPE" "OR51A7 WILD-TYPE" 
      TCGA-55-1594       TCGA-55-1595       TCGA-55-1596       TCGA-55-5899 
"OR51A7 WILD-TYPE" "OR51A7 WILD-TYPE" "OR51A7 WILD-TYPE" "OR51A7 WILD-TYPE" 
      TCGA-55-6642       TCGA-55-6712       TCGA-64-1677       TCGA-64-1678 
"OR51A7 WILD-TYPE" "OR51A7 WILD-TYPE" "OR51A7 WILD-TYPE" "OR51A7 WILD-TYPE" 
      TCGA-64-1680       TCGA-64-5774       TCGA-64-5775       TCGA-64-5778 
"OR51A7 WILD-TYPE" "OR51A7 WILD-TYPE" "OR51A7 WILD-TYPE" "OR51A7 WILD-TYPE" 
      TCGA-64-5779       TCGA-64-5781       TCGA-73-4659       TCGA-73-4666 
"OR51A7 WILD-TYPE" "OR51A7 WILD-TYPE" "OR51A7 WILD-TYPE" "OR51A7 WILD-TYPE" 
      TCGA-73-4668       TCGA-73-4670       TCGA-73-4675       TCGA-73-4676 
"OR51A7 WILD-TYPE" "OR51A7 WILD-TYPE" "OR51A7 WILD-TYPE" "OR51A7 WILD-TYPE" 
      TCGA-91-6829       TCGA-91-6836 
"OR51A7 WILD-TYPE" "OR51A7 WILD-TYPE" 

Clustering(161) Variable = CRISP1 MUTATION ANALYSIS
D161V1, survival
                  sevent
clus2               0  1
  CRISP1 MUTATED    4  0
  CRISP1 WILD-TYPE 95 50
  CRISP1 MUTATED CRISP1 WILD-TYPE 
               4              145 
  CRISP1 MUTATED CRISP1 WILD-TYPE 
               0               50 
$`CRISP1 MUTATED`
TCGA-44-3918 TCGA-44-6144 TCGA-55-1595 TCGA-64-1676 
        6.44         0.30        48.62        56.81 

$`CRISP1 WILD-TYPE`
TCGA-05-4249 TCGA-05-4250 TCGA-05-4382 TCGA-05-4384 TCGA-05-4390 TCGA-05-4396 
       38.07         3.98        19.92        14.01        37.02         9.96 
TCGA-05-4397 TCGA-05-4398 TCGA-05-4402 TCGA-05-4405 TCGA-05-4415 TCGA-05-4417 
       24.03        47.05         8.02        20.05         2.96        14.93 
TCGA-05-4418 TCGA-05-4420 TCGA-05-4424 TCGA-05-4426 TCGA-05-4427 TCGA-05-4430 
        8.98        29.95        30.02        26.01        26.01        25.02 
TCGA-05-4432 TCGA-05-4433 TCGA-05-4434 TCGA-05-5420 TCGA-05-5423 TCGA-05-5425 
       25.02        24.00        15.02         1.02         4.96         2.96 
TCGA-05-5429 TCGA-05-5715 TCGA-35-3615 TCGA-35-4122 TCGA-35-4123 TCGA-35-5375 
        0.99         2.04         0.46         7.36         5.95         8.68 
TCGA-38-4625 TCGA-38-4626 TCGA-38-4627 TCGA-38-4628 TCGA-38-4629 TCGA-38-4630 
       47.61        85.32        37.71        49.02        28.37        35.28 
TCGA-38-4631 TCGA-38-4632 TCGA-38-6178 TCGA-44-2655 TCGA-44-2656 TCGA-44-2657 
       11.64        44.61         5.19        18.87        19.10        13.15 
TCGA-44-2659 TCGA-44-2661 TCGA-44-2662 TCGA-44-2665 TCGA-44-2666 TCGA-44-2668 
       17.39         3.39        15.78        13.15         3.19         8.09 
TCGA-44-3396 TCGA-44-3398 TCGA-44-3919 TCGA-44-4112 TCGA-44-5643 TCGA-44-5645 
       10.22         8.32         6.21         4.60         3.48         6.84 
TCGA-44-6145 TCGA-44-6146 TCGA-44-6147 TCGA-44-6148 TCGA-44-6774 TCGA-44-6775 
        3.35         9.93         7.76         3.12         5.42         2.70 
TCGA-44-6776 TCGA-44-6777 TCGA-44-6778 TCGA-44-6779 TCGA-49-4486 TCGA-49-4487 
       63.72        32.45        36.49        16.41        76.21        28.11 
TCGA-49-4488 TCGA-49-4490 TCGA-49-4494 TCGA-49-4501 TCGA-49-4505 TCGA-49-4506 
       28.57        12.66        35.54        46.72        14.07        32.84 
TCGA-49-4507 TCGA-49-4510 TCGA-49-4512 TCGA-49-4514 TCGA-49-6742 TCGA-49-6743 
        8.81        29.46        29.75        43.20        15.02        12.13 
TCGA-49-6744 TCGA-49-6745 TCGA-50-5044 TCGA-50-5045 TCGA-50-5049 TCGA-50-5051 
       12.99         4.93        20.48        71.47        48.82        14.96 
TCGA-50-5055 TCGA-50-5066 TCGA-50-5068 TCGA-50-5072 TCGA-50-5930 TCGA-50-5931 
       25.81         9.76        49.28         8.05         9.27         8.78 
TCGA-50-5932 TCGA-50-5933 TCGA-50-5935 TCGA-50-5936 TCGA-50-5939 TCGA-50-5941 
       35.87        77.88        21.47         8.45        15.12         9.37 
TCGA-50-5942 TCGA-50-5944 TCGA-50-5946 TCGA-50-6590 TCGA-50-6591 TCGA-50-6592 
        4.44        12.26        11.47        42.31         3.88        25.51 
TCGA-50-6593 TCGA-50-6594 TCGA-50-6595 TCGA-50-6597 TCGA-55-1592 TCGA-55-1594 
       11.05        12.16         6.21        33.37        23.05        38.73 
TCGA-55-1596 TCGA-55-5899 TCGA-55-6543 TCGA-55-6642 TCGA-55-6712 TCGA-64-1677 
       45.17         2.86         0.07        32.61         0.79        20.65 
TCGA-64-1678 TCGA-64-1680 TCGA-64-5774 TCGA-64-5775 TCGA-64-5778 TCGA-64-5779 
       39.09        37.02        83.84         0.10        30.44        16.67 
TCGA-64-5781 TCGA-64-5815 TCGA-67-3770 TCGA-67-3771 TCGA-67-3772 TCGA-67-3773 
       39.52         7.33         0.99         1.97         0.59         2.04 
TCGA-67-3774 TCGA-67-6215 TCGA-67-6216 TCGA-67-6217 TCGA-71-6725 TCGA-73-4658 
        0.59         0.89         0.69        13.87         2.01        52.57 
TCGA-73-4659 TCGA-73-4662 TCGA-73-4666 TCGA-73-4668 TCGA-73-4670 TCGA-73-4675 
       23.38        29.95        20.28        15.35         0.46         1.32 
TCGA-73-4676 TCGA-73-4677 TCGA-91-6828 TCGA-91-6829 TCGA-91-6831 TCGA-91-6835 
        4.01         1.25         1.22        41.33         1.28         1.15 
TCGA-91-6836 
        0.36 

  CRISP1 MUTATED CRISP1 WILD-TYPE 
            0.30             0.07 
  CRISP1 MUTATED CRISP1 WILD-TYPE 
           56.81            85.32 
  CRISP1 MUTATED CRISP1 WILD-TYPE 
           27.53            13.87 
[1] "0.3 - 56.8 (27.5)" "0.1 - 85.3 (13.9)"
      TCGA-05-4249       TCGA-05-4250       TCGA-05-4382       TCGA-05-4384 
"CRISP1 WILD-TYPE" "CRISP1 WILD-TYPE" "CRISP1 WILD-TYPE" "CRISP1 WILD-TYPE" 
      TCGA-05-4390       TCGA-05-4396       TCGA-05-4397       TCGA-05-4398 
"CRISP1 WILD-TYPE" "CRISP1 WILD-TYPE" "CRISP1 WILD-TYPE" "CRISP1 WILD-TYPE" 
      TCGA-05-4402       TCGA-05-4405       TCGA-05-4415       TCGA-05-4417 
"CRISP1 WILD-TYPE" "CRISP1 WILD-TYPE" "CRISP1 WILD-TYPE" "CRISP1 WILD-TYPE" 
      TCGA-05-4418       TCGA-05-4420       TCGA-05-4424       TCGA-05-4426 
"CRISP1 WILD-TYPE" "CRISP1 WILD-TYPE" "CRISP1 WILD-TYPE" "CRISP1 WILD-TYPE" 
      TCGA-05-4427       TCGA-05-4430       TCGA-05-4432       TCGA-05-4433 
"CRISP1 WILD-TYPE" "CRISP1 WILD-TYPE" "CRISP1 WILD-TYPE" "CRISP1 WILD-TYPE" 
      TCGA-05-4434       TCGA-05-5420       TCGA-05-5423       TCGA-05-5425 
"CRISP1 WILD-TYPE" "CRISP1 WILD-TYPE" "CRISP1 WILD-TYPE" "CRISP1 WILD-TYPE" 
      TCGA-05-5429       TCGA-05-5715       TCGA-35-3615       TCGA-35-4122 
"CRISP1 WILD-TYPE" "CRISP1 WILD-TYPE" "CRISP1 WILD-TYPE" "CRISP1 WILD-TYPE" 
      TCGA-35-4123       TCGA-35-5375       TCGA-38-4625       TCGA-38-4626 
"CRISP1 WILD-TYPE" "CRISP1 WILD-TYPE" "CRISP1 WILD-TYPE" "CRISP1 WILD-TYPE" 
      TCGA-38-4627       TCGA-38-4628       TCGA-38-4629       TCGA-38-4630 
"CRISP1 WILD-TYPE" "CRISP1 WILD-TYPE" "CRISP1 WILD-TYPE" "CRISP1 WILD-TYPE" 
      TCGA-38-4631       TCGA-38-4632       TCGA-38-6178       TCGA-44-2655 
"CRISP1 WILD-TYPE" "CRISP1 WILD-TYPE" "CRISP1 WILD-TYPE" "CRISP1 WILD-TYPE" 
      TCGA-44-2656       TCGA-44-2657       TCGA-44-2659       TCGA-44-2661 
"CRISP1 WILD-TYPE" "CRISP1 WILD-TYPE" "CRISP1 WILD-TYPE" "CRISP1 WILD-TYPE" 
      TCGA-44-2662       TCGA-44-2665       TCGA-44-2666       TCGA-44-2668 
"CRISP1 WILD-TYPE" "CRISP1 WILD-TYPE" "CRISP1 WILD-TYPE" "CRISP1 WILD-TYPE" 
      TCGA-44-3396       TCGA-44-3398       TCGA-44-3918       TCGA-44-3919 
"CRISP1 WILD-TYPE" "CRISP1 WILD-TYPE"   "CRISP1 MUTATED" "CRISP1 WILD-TYPE" 
      TCGA-44-4112       TCGA-44-5643       TCGA-44-5645       TCGA-44-6144 
"CRISP1 WILD-TYPE" "CRISP1 WILD-TYPE" "CRISP1 WILD-TYPE"   "CRISP1 MUTATED" 
      TCGA-44-6145       TCGA-44-6146       TCGA-44-6147       TCGA-44-6148 
"CRISP1 WILD-TYPE" "CRISP1 WILD-TYPE" "CRISP1 WILD-TYPE" "CRISP1 WILD-TYPE" 
      TCGA-44-6774       TCGA-44-6775       TCGA-44-6776       TCGA-44-6777 
"CRISP1 WILD-TYPE" "CRISP1 WILD-TYPE" "CRISP1 WILD-TYPE" "CRISP1 WILD-TYPE" 
      TCGA-44-6778       TCGA-44-6779       TCGA-49-4486       TCGA-49-4487 
"CRISP1 WILD-TYPE" "CRISP1 WILD-TYPE" "CRISP1 WILD-TYPE" "CRISP1 WILD-TYPE" 
      TCGA-49-4488       TCGA-49-4490       TCGA-49-4494       TCGA-49-4501 
"CRISP1 WILD-TYPE" "CRISP1 WILD-TYPE" "CRISP1 WILD-TYPE" "CRISP1 WILD-TYPE" 
      TCGA-49-4505       TCGA-49-4506       TCGA-49-4507       TCGA-49-4510 
"CRISP1 WILD-TYPE" "CRISP1 WILD-TYPE" "CRISP1 WILD-TYPE" "CRISP1 WILD-TYPE" 
      TCGA-49-4512       TCGA-49-4514       TCGA-49-6742       TCGA-49-6743 
"CRISP1 WILD-TYPE" "CRISP1 WILD-TYPE" "CRISP1 WILD-TYPE" "CRISP1 WILD-TYPE" 
      TCGA-49-6744       TCGA-49-6745       TCGA-50-5044       TCGA-50-5045 
"CRISP1 WILD-TYPE" "CRISP1 WILD-TYPE" "CRISP1 WILD-TYPE" "CRISP1 WILD-TYPE" 
      TCGA-50-5049       TCGA-50-5051       TCGA-50-5055       TCGA-50-5066 
"CRISP1 WILD-TYPE" "CRISP1 WILD-TYPE" "CRISP1 WILD-TYPE" "CRISP1 WILD-TYPE" 
      TCGA-50-5068       TCGA-50-5072       TCGA-50-5930       TCGA-50-5931 
"CRISP1 WILD-TYPE" "CRISP1 WILD-TYPE" "CRISP1 WILD-TYPE" "CRISP1 WILD-TYPE" 
      TCGA-50-5932       TCGA-50-5933       TCGA-50-5935       TCGA-50-5936 
"CRISP1 WILD-TYPE" "CRISP1 WILD-TYPE" "CRISP1 WILD-TYPE" "CRISP1 WILD-TYPE" 
      TCGA-50-5939       TCGA-50-5941       TCGA-50-5942       TCGA-50-5944 
"CRISP1 WILD-TYPE" "CRISP1 WILD-TYPE" "CRISP1 WILD-TYPE" "CRISP1 WILD-TYPE" 
      TCGA-50-5946       TCGA-50-6590       TCGA-50-6591       TCGA-50-6592 
"CRISP1 WILD-TYPE" "CRISP1 WILD-TYPE" "CRISP1 WILD-TYPE" "CRISP1 WILD-TYPE" 
      TCGA-50-6593       TCGA-50-6594       TCGA-50-6595       TCGA-50-6597 
"CRISP1 WILD-TYPE" "CRISP1 WILD-TYPE" "CRISP1 WILD-TYPE" "CRISP1 WILD-TYPE" 
      TCGA-55-1592       TCGA-55-1594       TCGA-55-1595       TCGA-55-1596 
"CRISP1 WILD-TYPE" "CRISP1 WILD-TYPE"   "CRISP1 MUTATED" "CRISP1 WILD-TYPE" 
      TCGA-55-5899       TCGA-55-6543       TCGA-55-6642       TCGA-55-6712 
"CRISP1 WILD-TYPE" "CRISP1 WILD-TYPE" "CRISP1 WILD-TYPE" "CRISP1 WILD-TYPE" 
      TCGA-64-1676       TCGA-64-1677       TCGA-64-1678       TCGA-64-1680 
  "CRISP1 MUTATED" "CRISP1 WILD-TYPE" "CRISP1 WILD-TYPE" "CRISP1 WILD-TYPE" 
      TCGA-64-5774       TCGA-64-5775       TCGA-64-5778       TCGA-64-5779 
"CRISP1 WILD-TYPE" "CRISP1 WILD-TYPE" "CRISP1 WILD-TYPE" "CRISP1 WILD-TYPE" 
      TCGA-64-5781       TCGA-64-5815       TCGA-67-3770       TCGA-67-3771 
"CRISP1 WILD-TYPE" "CRISP1 WILD-TYPE" "CRISP1 WILD-TYPE" "CRISP1 WILD-TYPE" 
      TCGA-67-3772       TCGA-67-3773       TCGA-67-3774       TCGA-67-6215 
"CRISP1 WILD-TYPE" "CRISP1 WILD-TYPE" "CRISP1 WILD-TYPE" "CRISP1 WILD-TYPE" 
      TCGA-67-6216       TCGA-67-6217       TCGA-71-6725       TCGA-73-4658 
"CRISP1 WILD-TYPE" "CRISP1 WILD-TYPE" "CRISP1 WILD-TYPE" "CRISP1 WILD-TYPE" 
      TCGA-73-4659       TCGA-73-4662       TCGA-73-4666       TCGA-73-4668 
"CRISP1 WILD-TYPE" "CRISP1 WILD-TYPE" "CRISP1 WILD-TYPE" "CRISP1 WILD-TYPE" 
      TCGA-73-4670       TCGA-73-4675       TCGA-73-4676       TCGA-73-4677 
"CRISP1 WILD-TYPE" "CRISP1 WILD-TYPE" "CRISP1 WILD-TYPE" "CRISP1 WILD-TYPE" 
      TCGA-91-6828       TCGA-91-6829       TCGA-91-6831       TCGA-91-6835 
"CRISP1 WILD-TYPE" "CRISP1 WILD-TYPE" "CRISP1 WILD-TYPE" "CRISP1 WILD-TYPE" 
      TCGA-91-6836 
"CRISP1 WILD-TYPE" 
      TCGA-05-4249       TCGA-05-4250       TCGA-05-4382       TCGA-05-4384 
"CRISP1 WILD-TYPE" "CRISP1 WILD-TYPE" "CRISP1 WILD-TYPE" "CRISP1 WILD-TYPE" 
      TCGA-05-4390       TCGA-05-4396       TCGA-05-4397       TCGA-05-4398 
"CRISP1 WILD-TYPE" "CRISP1 WILD-TYPE" "CRISP1 WILD-TYPE" "CRISP1 WILD-TYPE" 
      TCGA-05-4402       TCGA-05-4405       TCGA-05-4415       TCGA-05-4417 
"CRISP1 WILD-TYPE" "CRISP1 WILD-TYPE" "CRISP1 WILD-TYPE" "CRISP1 WILD-TYPE" 
      TCGA-05-4418       TCGA-05-4420       TCGA-05-4424       TCGA-05-4426 
"CRISP1 WILD-TYPE" "CRISP1 WILD-TYPE" "CRISP1 WILD-TYPE" "CRISP1 WILD-TYPE" 
      TCGA-05-4427       TCGA-05-4430       TCGA-05-4432       TCGA-05-4433 
"CRISP1 WILD-TYPE" "CRISP1 WILD-TYPE" "CRISP1 WILD-TYPE" "CRISP1 WILD-TYPE" 
      TCGA-05-4434       TCGA-05-5420       TCGA-05-5423       TCGA-05-5425 
"CRISP1 WILD-TYPE" "CRISP1 WILD-TYPE" "CRISP1 WILD-TYPE" "CRISP1 WILD-TYPE" 
      TCGA-05-5429       TCGA-05-5715       TCGA-35-3615       TCGA-35-4122 
"CRISP1 WILD-TYPE" "CRISP1 WILD-TYPE" "CRISP1 WILD-TYPE" "CRISP1 WILD-TYPE" 
      TCGA-35-4123       TCGA-35-5375       TCGA-38-4625       TCGA-38-4626 
"CRISP1 WILD-TYPE" "CRISP1 WILD-TYPE" "CRISP1 WILD-TYPE" "CRISP1 WILD-TYPE" 
      TCGA-38-4627       TCGA-38-4628       TCGA-38-4629       TCGA-38-4630 
"CRISP1 WILD-TYPE" "CRISP1 WILD-TYPE" "CRISP1 WILD-TYPE" "CRISP1 WILD-TYPE" 
      TCGA-38-4631       TCGA-38-4632       TCGA-38-6178       TCGA-44-2655 
"CRISP1 WILD-TYPE" "CRISP1 WILD-TYPE" "CRISP1 WILD-TYPE" "CRISP1 WILD-TYPE" 
      TCGA-44-2656       TCGA-44-2657       TCGA-44-2659       TCGA-44-2661 
"CRISP1 WILD-TYPE" "CRISP1 WILD-TYPE" "CRISP1 WILD-TYPE" "CRISP1 WILD-TYPE" 
      TCGA-44-2662       TCGA-44-2665       TCGA-44-2666       TCGA-44-2668 
"CRISP1 WILD-TYPE" "CRISP1 WILD-TYPE" "CRISP1 WILD-TYPE" "CRISP1 WILD-TYPE" 
      TCGA-44-3396       TCGA-44-3398       TCGA-44-3918       TCGA-44-3919 
"CRISP1 WILD-TYPE" "CRISP1 WILD-TYPE"   "CRISP1 MUTATED" "CRISP1 WILD-TYPE" 
      TCGA-44-4112       TCGA-44-5643       TCGA-44-5645       TCGA-44-6144 
"CRISP1 WILD-TYPE" "CRISP1 WILD-TYPE" "CRISP1 WILD-TYPE"   "CRISP1 MUTATED" 
      TCGA-44-6145       TCGA-44-6146       TCGA-44-6147       TCGA-44-6148 
"CRISP1 WILD-TYPE" "CRISP1 WILD-TYPE" "CRISP1 WILD-TYPE" "CRISP1 WILD-TYPE" 
      TCGA-44-6774       TCGA-44-6775       TCGA-44-6776       TCGA-44-6777 
"CRISP1 WILD-TYPE" "CRISP1 WILD-TYPE" "CRISP1 WILD-TYPE" "CRISP1 WILD-TYPE" 
      TCGA-44-6778       TCGA-44-6779       TCGA-49-4486       TCGA-49-4487 
"CRISP1 WILD-TYPE" "CRISP1 WILD-TYPE" "CRISP1 WILD-TYPE" "CRISP1 WILD-TYPE" 
      TCGA-49-4488       TCGA-49-4490       TCGA-49-4494       TCGA-49-4501 
"CRISP1 WILD-TYPE" "CRISP1 WILD-TYPE" "CRISP1 WILD-TYPE" "CRISP1 WILD-TYPE" 
      TCGA-49-4505       TCGA-49-4506       TCGA-49-4507       TCGA-49-4510 
"CRISP1 WILD-TYPE" "CRISP1 WILD-TYPE" "CRISP1 WILD-TYPE" "CRISP1 WILD-TYPE" 
      TCGA-49-4512       TCGA-49-4514       TCGA-49-6742       TCGA-49-6743 
"CRISP1 WILD-TYPE" "CRISP1 WILD-TYPE" "CRISP1 WILD-TYPE" "CRISP1 WILD-TYPE" 
      TCGA-49-6744       TCGA-49-6745       TCGA-50-5044       TCGA-50-5045 
"CRISP1 WILD-TYPE" "CRISP1 WILD-TYPE" "CRISP1 WILD-TYPE" "CRISP1 WILD-TYPE" 
      TCGA-50-5049       TCGA-50-5051       TCGA-50-5055       TCGA-50-5066 
"CRISP1 WILD-TYPE" "CRISP1 WILD-TYPE" "CRISP1 WILD-TYPE" "CRISP1 WILD-TYPE" 
      TCGA-50-5068       TCGA-50-5072       TCGA-50-5930       TCGA-50-5931 
"CRISP1 WILD-TYPE" "CRISP1 WILD-TYPE" "CRISP1 WILD-TYPE" "CRISP1 WILD-TYPE" 
      TCGA-50-5932       TCGA-50-5933       TCGA-50-5935       TCGA-50-5936 
"CRISP1 WILD-TYPE" "CRISP1 WILD-TYPE" "CRISP1 WILD-TYPE" "CRISP1 WILD-TYPE" 
      TCGA-50-5939       TCGA-50-5941       TCGA-50-5942       TCGA-50-5944 
"CRISP1 WILD-TYPE" "CRISP1 WILD-TYPE" "CRISP1 WILD-TYPE" "CRISP1 WILD-TYPE" 
      TCGA-50-5946       TCGA-50-6590       TCGA-50-6591       TCGA-50-6592 
"CRISP1 WILD-TYPE" "CRISP1 WILD-TYPE" "CRISP1 WILD-TYPE" "CRISP1 WILD-TYPE" 
      TCGA-50-6593       TCGA-50-6594       TCGA-50-6595       TCGA-50-6597 
"CRISP1 WILD-TYPE" "CRISP1 WILD-TYPE" "CRISP1 WILD-TYPE" "CRISP1 WILD-TYPE" 
      TCGA-55-1592       TCGA-55-1594       TCGA-55-1595       TCGA-55-1596 
"CRISP1 WILD-TYPE" "CRISP1 WILD-TYPE"   "CRISP1 MUTATED" "CRISP1 WILD-TYPE" 
      TCGA-55-5899       TCGA-55-6543       TCGA-55-6642       TCGA-55-6712 
"CRISP1 WILD-TYPE" "CRISP1 WILD-TYPE" "CRISP1 WILD-TYPE" "CRISP1 WILD-TYPE" 
      TCGA-64-1676       TCGA-64-1677       TCGA-64-1678       TCGA-64-1680 
  "CRISP1 MUTATED" "CRISP1 WILD-TYPE" "CRISP1 WILD-TYPE" "CRISP1 WILD-TYPE" 
      TCGA-64-5774       TCGA-64-5775       TCGA-64-5778       TCGA-64-5779 
"CRISP1 WILD-TYPE" "CRISP1 WILD-TYPE" "CRISP1 WILD-TYPE" "CRISP1 WILD-TYPE" 
      TCGA-64-5781       TCGA-64-5815       TCGA-67-3770       TCGA-67-3771 
"CRISP1 WILD-TYPE" "CRISP1 WILD-TYPE" "CRISP1 WILD-TYPE" "CRISP1 WILD-TYPE" 
      TCGA-67-3772       TCGA-67-3773       TCGA-67-3774       TCGA-67-6215 
"CRISP1 WILD-TYPE" "CRISP1 WILD-TYPE" "CRISP1 WILD-TYPE" "CRISP1 WILD-TYPE" 
      TCGA-67-6216       TCGA-67-6217       TCGA-71-6725       TCGA-73-4658 
"CRISP1 WILD-TYPE" "CRISP1 WILD-TYPE" "CRISP1 WILD-TYPE" "CRISP1 WILD-TYPE" 
      TCGA-73-4659       TCGA-73-4662       TCGA-73-4666       TCGA-73-4668 
"CRISP1 WILD-TYPE" "CRISP1 WILD-TYPE" "CRISP1 WILD-TYPE" "CRISP1 WILD-TYPE" 
      TCGA-73-4670       TCGA-73-4675       TCGA-73-4676       TCGA-73-4677 
"CRISP1 WILD-TYPE" "CRISP1 WILD-TYPE" "CRISP1 WILD-TYPE" "CRISP1 WILD-TYPE" 
      TCGA-91-6828       TCGA-91-6829       TCGA-91-6831       TCGA-91-6835 
"CRISP1 WILD-TYPE" "CRISP1 WILD-TYPE" "CRISP1 WILD-TYPE" "CRISP1 WILD-TYPE" 
      TCGA-91-6836 
"CRISP1 WILD-TYPE" 
      TCGA-05-4249       TCGA-05-4250       TCGA-05-4382       TCGA-05-4384 
"CRISP1 WILD-TYPE" "CRISP1 WILD-TYPE" "CRISP1 WILD-TYPE" "CRISP1 WILD-TYPE" 
      TCGA-05-4390       TCGA-05-4396       TCGA-05-4397       TCGA-05-4398 
"CRISP1 WILD-TYPE" "CRISP1 WILD-TYPE" "CRISP1 WILD-TYPE" "CRISP1 WILD-TYPE" 
      TCGA-05-4402       TCGA-05-4405       TCGA-05-4415       TCGA-05-4417 
"CRISP1 WILD-TYPE" "CRISP1 WILD-TYPE" "CRISP1 WILD-TYPE" "CRISP1 WILD-TYPE" 
      TCGA-05-4418       TCGA-05-4420       TCGA-05-4424       TCGA-05-4426 
"CRISP1 WILD-TYPE" "CRISP1 WILD-TYPE" "CRISP1 WILD-TYPE" "CRISP1 WILD-TYPE" 
      TCGA-05-4427       TCGA-05-4430       TCGA-05-4432       TCGA-05-4433 
"CRISP1 WILD-TYPE" "CRISP1 WILD-TYPE" "CRISP1 WILD-TYPE" "CRISP1 WILD-TYPE" 
      TCGA-05-4434       TCGA-05-5420       TCGA-05-5423       TCGA-05-5425 
"CRISP1 WILD-TYPE" "CRISP1 WILD-TYPE" "CRISP1 WILD-TYPE" "CRISP1 WILD-TYPE" 
      TCGA-05-5429       TCGA-05-5715       TCGA-35-3615       TCGA-35-4122 
"CRISP1 WILD-TYPE" "CRISP1 WILD-TYPE" "CRISP1 WILD-TYPE" "CRISP1 WILD-TYPE" 
      TCGA-35-4123       TCGA-35-5375       TCGA-38-4625       TCGA-38-4626 
"CRISP1 WILD-TYPE" "CRISP1 WILD-TYPE" "CRISP1 WILD-TYPE" "CRISP1 WILD-TYPE" 
      TCGA-38-4627       TCGA-38-4628       TCGA-38-4629       TCGA-38-4630 
"CRISP1 WILD-TYPE" "CRISP1 WILD-TYPE" "CRISP1 WILD-TYPE" "CRISP1 WILD-TYPE" 
      TCGA-38-4631       TCGA-38-4632       TCGA-38-6178       TCGA-44-2655 
"CRISP1 WILD-TYPE" "CRISP1 WILD-TYPE" "CRISP1 WILD-TYPE" "CRISP1 WILD-TYPE" 
      TCGA-44-2656       TCGA-44-2657       TCGA-44-2659       TCGA-44-2661 
"CRISP1 WILD-TYPE" "CRISP1 WILD-TYPE" "CRISP1 WILD-TYPE" "CRISP1 WILD-TYPE" 
      TCGA-44-2662       TCGA-44-2665       TCGA-44-2666       TCGA-44-2668 
"CRISP1 WILD-TYPE" "CRISP1 WILD-TYPE" "CRISP1 WILD-TYPE" "CRISP1 WILD-TYPE" 
      TCGA-44-3396       TCGA-44-3398       TCGA-44-3918       TCGA-44-3919 
"CRISP1 WILD-TYPE" "CRISP1 WILD-TYPE"   "CRISP1 MUTATED" "CRISP1 WILD-TYPE" 
      TCGA-44-4112       TCGA-44-5643       TCGA-44-5645       TCGA-44-6144 
"CRISP1 WILD-TYPE" "CRISP1 WILD-TYPE" "CRISP1 WILD-TYPE"   "CRISP1 MUTATED" 
      TCGA-44-6145       TCGA-44-6146       TCGA-44-6147       TCGA-44-6148 
"CRISP1 WILD-TYPE" "CRISP1 WILD-TYPE" "CRISP1 WILD-TYPE" "CRISP1 WILD-TYPE" 
      TCGA-44-6774       TCGA-44-6775       TCGA-44-6776       TCGA-44-6777 
"CRISP1 WILD-TYPE" "CRISP1 WILD-TYPE" "CRISP1 WILD-TYPE" "CRISP1 WILD-TYPE" 
      TCGA-44-6778       TCGA-44-6779       TCGA-49-4486       TCGA-49-4487 
"CRISP1 WILD-TYPE" "CRISP1 WILD-TYPE" "CRISP1 WILD-TYPE" "CRISP1 WILD-TYPE" 
      TCGA-49-4488       TCGA-49-4490       TCGA-49-4494       TCGA-49-4501 
"CRISP1 WILD-TYPE" "CRISP1 WILD-TYPE" "CRISP1 WILD-TYPE" "CRISP1 WILD-TYPE" 
      TCGA-49-4505       TCGA-49-4506       TCGA-49-4507       TCGA-49-4510 
"CRISP1 WILD-TYPE" "CRISP1 WILD-TYPE" "CRISP1 WILD-TYPE" "CRISP1 WILD-TYPE" 
      TCGA-49-4512       TCGA-49-4514       TCGA-49-6742       TCGA-49-6743 
"CRISP1 WILD-TYPE" "CRISP1 WILD-TYPE" "CRISP1 WILD-TYPE" "CRISP1 WILD-TYPE" 
      TCGA-49-6744       TCGA-49-6745       TCGA-50-5044       TCGA-50-5045 
"CRISP1 WILD-TYPE" "CRISP1 WILD-TYPE" "CRISP1 WILD-TYPE" "CRISP1 WILD-TYPE" 
      TCGA-50-5049       TCGA-50-5051       TCGA-50-5055       TCGA-50-5066 
"CRISP1 WILD-TYPE" "CRISP1 WILD-TYPE" "CRISP1 WILD-TYPE" "CRISP1 WILD-TYPE" 
      TCGA-50-5068       TCGA-50-5072       TCGA-50-5930       TCGA-50-5931 
"CRISP1 WILD-TYPE" "CRISP1 WILD-TYPE" "CRISP1 WILD-TYPE" "CRISP1 WILD-TYPE" 
      TCGA-50-5932       TCGA-50-5933       TCGA-50-5935       TCGA-50-5936 
"CRISP1 WILD-TYPE" "CRISP1 WILD-TYPE" "CRISP1 WILD-TYPE" "CRISP1 WILD-TYPE" 
      TCGA-50-5939       TCGA-50-5941       TCGA-50-5942       TCGA-50-5944 
"CRISP1 WILD-TYPE" "CRISP1 WILD-TYPE" "CRISP1 WILD-TYPE" "CRISP1 WILD-TYPE" 
      TCGA-50-5946       TCGA-50-6590       TCGA-50-6591       TCGA-50-6592 
"CRISP1 WILD-TYPE" "CRISP1 WILD-TYPE" "CRISP1 WILD-TYPE" "CRISP1 WILD-TYPE" 
      TCGA-50-6593       TCGA-50-6594       TCGA-50-6595       TCGA-50-6597 
"CRISP1 WILD-TYPE" "CRISP1 WILD-TYPE" "CRISP1 WILD-TYPE" "CRISP1 WILD-TYPE" 
      TCGA-55-1592       TCGA-55-1594       TCGA-55-1595       TCGA-55-1596 
"CRISP1 WILD-TYPE" "CRISP1 WILD-TYPE"   "CRISP1 MUTATED" "CRISP1 WILD-TYPE" 
      TCGA-55-5899       TCGA-55-6543       TCGA-55-6642       TCGA-55-6712 
"CRISP1 WILD-TYPE" "CRISP1 WILD-TYPE" "CRISP1 WILD-TYPE" "CRISP1 WILD-TYPE" 
      TCGA-64-1676       TCGA-64-1677       TCGA-64-1678       TCGA-64-1680 
  "CRISP1 MUTATED" "CRISP1 WILD-TYPE" "CRISP1 WILD-TYPE" "CRISP1 WILD-TYPE" 
      TCGA-64-5774       TCGA-64-5775       TCGA-64-5778       TCGA-64-5779 
"CRISP1 WILD-TYPE" "CRISP1 WILD-TYPE" "CRISP1 WILD-TYPE" "CRISP1 WILD-TYPE" 
      TCGA-64-5781       TCGA-64-5815       TCGA-67-3770       TCGA-67-3771 
"CRISP1 WILD-TYPE" "CRISP1 WILD-TYPE" "CRISP1 WILD-TYPE" "CRISP1 WILD-TYPE" 
      TCGA-67-3772       TCGA-67-3773       TCGA-67-3774       TCGA-67-6215 
"CRISP1 WILD-TYPE" "CRISP1 WILD-TYPE" "CRISP1 WILD-TYPE" "CRISP1 WILD-TYPE" 
      TCGA-67-6216       TCGA-67-6217       TCGA-71-6725       TCGA-73-4658 
"CRISP1 WILD-TYPE" "CRISP1 WILD-TYPE" "CRISP1 WILD-TYPE" "CRISP1 WILD-TYPE" 
      TCGA-73-4659       TCGA-73-4662       TCGA-73-4666       TCGA-73-4668 
"CRISP1 WILD-TYPE" "CRISP1 WILD-TYPE" "CRISP1 WILD-TYPE" "CRISP1 WILD-TYPE" 
      TCGA-73-4670       TCGA-73-4675       TCGA-73-4676       TCGA-73-4677 
"CRISP1 WILD-TYPE" "CRISP1 WILD-TYPE" "CRISP1 WILD-TYPE" "CRISP1 WILD-TYPE" 
      TCGA-91-6828       TCGA-91-6829       TCGA-91-6831       TCGA-91-6835 
"CRISP1 WILD-TYPE" "CRISP1 WILD-TYPE" "CRISP1 WILD-TYPE" "CRISP1 WILD-TYPE" 
      TCGA-91-6836 
"CRISP1 WILD-TYPE" 
[1] "hr="     "2.7e+07"
D161V2, continuous
D161V3, binary
[1] "tbl2"
                  cls
clus               [,1] [,2]
  CRISP1 MUTATED      2    2
  CRISP1 WILD-TYPE   91   77
        clus
vv       CRISP1 MUTATED CRISP1 WILD-TYPE
  FEMALE              2               91
  MALE                2               77
D161V4, continuous
D161V5, multiclass
D161V6, multiclass
    clus
vv   CRISP1 MUTATED CRISP1 WILD-TYPE
  T1              4               37
  T2              0              108
  T3              0               14
  T4              0                8
D161V7, multiclass
       clus
vv      CRISP1 MUTATED CRISP1 WILD-TYPE
  N0                 4               91
  N1                 0               37
  N2+N3              0               35
D161V8, multiclass
    clus
vv   CRISP1 MUTATED CRISP1 WILD-TYPE
  M0              4              133
  M1              0                9
  MX              0               22
D161V9, multiclass
     clus
vv    CRISP1 MUTATED CRISP1 WILD-TYPE
  I                4               84
  II               0               33
  III              0               39
  IV               0                9
D161V10, binary
[1] "tbl2"
                  cls
clus               [,1] [,2]
  CRISP1 MUTATED      0    4
  CRISP1 WILD-TYPE   16  152
     clus
vv    CRISP1 MUTATED CRISP1 WILD-TYPE
  NO               0               16
  YES              4              152
D161V11, continuous
D161V12, continuous
[1] "Remove cluster labels:" "CRISP1 MUTATED"        
clus
  CRISP1 MUTATED CRISP1 WILD-TYPE 
               2               80 
      TCGA-05-4384       TCGA-05-4390       TCGA-05-4396       TCGA-05-4403 
"CRISP1 WILD-TYPE" "CRISP1 WILD-TYPE" "CRISP1 WILD-TYPE" "CRISP1 WILD-TYPE" 
      TCGA-05-4405       TCGA-05-4410       TCGA-05-4415       TCGA-05-4417 
"CRISP1 WILD-TYPE" "CRISP1 WILD-TYPE" "CRISP1 WILD-TYPE" "CRISP1 WILD-TYPE" 
      TCGA-05-4424       TCGA-05-4427       TCGA-05-4433       TCGA-05-5420 
"CRISP1 WILD-TYPE" "CRISP1 WILD-TYPE" "CRISP1 WILD-TYPE" "CRISP1 WILD-TYPE" 
      TCGA-05-5423       TCGA-05-5425       TCGA-05-5428       TCGA-35-4122 
"CRISP1 WILD-TYPE" "CRISP1 WILD-TYPE" "CRISP1 WILD-TYPE" "CRISP1 WILD-TYPE" 
      TCGA-35-4123       TCGA-35-5375       TCGA-38-4629       TCGA-38-4632 
"CRISP1 WILD-TYPE" "CRISP1 WILD-TYPE" "CRISP1 WILD-TYPE" "CRISP1 WILD-TYPE" 
      TCGA-44-2655       TCGA-44-2656       TCGA-44-2657       TCGA-44-2659 
"CRISP1 WILD-TYPE" "CRISP1 WILD-TYPE" "CRISP1 WILD-TYPE" "CRISP1 WILD-TYPE" 
      TCGA-44-2662       TCGA-44-2668       TCGA-44-3398       TCGA-44-4112 
"CRISP1 WILD-TYPE" "CRISP1 WILD-TYPE" "CRISP1 WILD-TYPE" "CRISP1 WILD-TYPE" 
      TCGA-44-5645       TCGA-44-6145       TCGA-44-6146       TCGA-44-6147 
"CRISP1 WILD-TYPE" "CRISP1 WILD-TYPE" "CRISP1 WILD-TYPE" "CRISP1 WILD-TYPE" 
      TCGA-44-6148       TCGA-44-6775       TCGA-44-6776       TCGA-44-6777 
"CRISP1 WILD-TYPE" "CRISP1 WILD-TYPE" "CRISP1 WILD-TYPE" "CRISP1 WILD-TYPE" 
      TCGA-44-6778       TCGA-44-6779       TCGA-49-4486       TCGA-49-4488 
"CRISP1 WILD-TYPE" "CRISP1 WILD-TYPE" "CRISP1 WILD-TYPE" "CRISP1 WILD-TYPE" 
      TCGA-49-4494       TCGA-49-4505       TCGA-49-4507       TCGA-50-5051 
"CRISP1 WILD-TYPE" "CRISP1 WILD-TYPE" "CRISP1 WILD-TYPE" "CRISP1 WILD-TYPE" 
      TCGA-50-5072       TCGA-50-5939       TCGA-50-5942       TCGA-50-5946 
"CRISP1 WILD-TYPE" "CRISP1 WILD-TYPE" "CRISP1 WILD-TYPE" "CRISP1 WILD-TYPE" 
      TCGA-50-6590       TCGA-50-6594       TCGA-50-6595       TCGA-55-1592 
"CRISP1 WILD-TYPE" "CRISP1 WILD-TYPE" "CRISP1 WILD-TYPE" "CRISP1 WILD-TYPE" 
      TCGA-55-6543       TCGA-55-6712       TCGA-64-1678       TCGA-64-1680 
"CRISP1 WILD-TYPE" "CRISP1 WILD-TYPE" "CRISP1 WILD-TYPE" "CRISP1 WILD-TYPE" 
      TCGA-64-5774       TCGA-64-5778       TCGA-64-5779       TCGA-64-5781 
"CRISP1 WILD-TYPE" "CRISP1 WILD-TYPE" "CRISP1 WILD-TYPE" "CRISP1 WILD-TYPE" 
      TCGA-64-5815       TCGA-67-6217       TCGA-73-4659       TCGA-73-4662 
"CRISP1 WILD-TYPE" "CRISP1 WILD-TYPE" "CRISP1 WILD-TYPE" "CRISP1 WILD-TYPE" 
      TCGA-73-4666       TCGA-73-4668       TCGA-73-4670       TCGA-73-4675 
"CRISP1 WILD-TYPE" "CRISP1 WILD-TYPE" "CRISP1 WILD-TYPE" "CRISP1 WILD-TYPE" 
      TCGA-73-4676       TCGA-73-4677       TCGA-75-5122       TCGA-75-5125 
"CRISP1 WILD-TYPE" "CRISP1 WILD-TYPE" "CRISP1 WILD-TYPE" "CRISP1 WILD-TYPE" 
      TCGA-75-5126       TCGA-75-5146       TCGA-75-6206       TCGA-75-6207 
"CRISP1 WILD-TYPE" "CRISP1 WILD-TYPE" "CRISP1 WILD-TYPE" "CRISP1 WILD-TYPE" 
      TCGA-80-5611       TCGA-91-6828       TCGA-91-6829       TCGA-91-6835 
"CRISP1 WILD-TYPE" "CRISP1 WILD-TYPE" "CRISP1 WILD-TYPE" "CRISP1 WILD-TYPE" 
D161V13, multiclass
                                             clus
vv                                            CRISP1 MUTATED CRISP1 WILD-TYPE
  CURRENT REFORMED SMOKER FOR < OR = 15 YEARS              1               61
  CURRENT REFORMED SMOKER FOR > 15 YEARS                   1               45
  CURRENT SMOKER                                           2               26
  LIFELONG NON-SMOKER                                      0               24
D161V14, continuous

Clustering(162) Variable = MARCO MUTATION ANALYSIS
D162V1, survival
                 sevent
clus2              0  1
  MARCO MUTATED    9  4
  MARCO WILD-TYPE 90 46
  MARCO MUTATED MARCO WILD-TYPE 
             13             136 
  MARCO MUTATED MARCO WILD-TYPE 
              4              46 
$`MARCO MUTATED`
TCGA-05-4382 TCGA-05-5429 TCGA-38-4632 TCGA-44-3918 TCGA-50-6594 TCGA-55-1594 
       19.92         0.99        44.61         6.44        12.16        38.73 
TCGA-55-5899 TCGA-64-1676 TCGA-64-5775 TCGA-64-5778 TCGA-64-5781 TCGA-67-3770 
        2.86        56.81         0.10        30.44        39.52         0.99 
TCGA-91-6829 
       41.33 

$`MARCO WILD-TYPE`
TCGA-05-4249 TCGA-05-4250 TCGA-05-4384 TCGA-05-4390 TCGA-05-4396 TCGA-05-4397 
       38.07         3.98        14.01        37.02         9.96        24.03 
TCGA-05-4398 TCGA-05-4402 TCGA-05-4405 TCGA-05-4415 TCGA-05-4417 TCGA-05-4418 
       47.05         8.02        20.05         2.96        14.93         8.98 
TCGA-05-4420 TCGA-05-4424 TCGA-05-4426 TCGA-05-4427 TCGA-05-4430 TCGA-05-4432 
       29.95        30.02        26.01        26.01        25.02        25.02 
TCGA-05-4433 TCGA-05-4434 TCGA-05-5420 TCGA-05-5423 TCGA-05-5425 TCGA-05-5715 
       24.00        15.02         1.02         4.96         2.96         2.04 
TCGA-35-3615 TCGA-35-4122 TCGA-35-4123 TCGA-35-5375 TCGA-38-4625 TCGA-38-4626 
        0.46         7.36         5.95         8.68        47.61        85.32 
TCGA-38-4627 TCGA-38-4628 TCGA-38-4629 TCGA-38-4630 TCGA-38-4631 TCGA-38-6178 
       37.71        49.02        28.37        35.28        11.64         5.19 
TCGA-44-2655 TCGA-44-2656 TCGA-44-2657 TCGA-44-2659 TCGA-44-2661 TCGA-44-2662 
       18.87        19.10        13.15        17.39         3.39        15.78 
TCGA-44-2665 TCGA-44-2666 TCGA-44-2668 TCGA-44-3396 TCGA-44-3398 TCGA-44-3919 
       13.15         3.19         8.09        10.22         8.32         6.21 
TCGA-44-4112 TCGA-44-5643 TCGA-44-5645 TCGA-44-6144 TCGA-44-6145 TCGA-44-6146 
        4.60         3.48         6.84         0.30         3.35         9.93 
TCGA-44-6147 TCGA-44-6148 TCGA-44-6774 TCGA-44-6775 TCGA-44-6776 TCGA-44-6777 
        7.76         3.12         5.42         2.70        63.72        32.45 
TCGA-44-6778 TCGA-44-6779 TCGA-49-4486 TCGA-49-4487 TCGA-49-4488 TCGA-49-4490 
       36.49        16.41        76.21        28.11        28.57        12.66 
TCGA-49-4494 TCGA-49-4501 TCGA-49-4505 TCGA-49-4506 TCGA-49-4507 TCGA-49-4510 
       35.54        46.72        14.07        32.84         8.81        29.46 
TCGA-49-4512 TCGA-49-4514 TCGA-49-6742 TCGA-49-6743 TCGA-49-6744 TCGA-49-6745 
       29.75        43.20        15.02        12.13        12.99         4.93 
TCGA-50-5044 TCGA-50-5045 TCGA-50-5049 TCGA-50-5051 TCGA-50-5055 TCGA-50-5066 
       20.48        71.47        48.82        14.96        25.81         9.76 
TCGA-50-5068 TCGA-50-5072 TCGA-50-5930 TCGA-50-5931 TCGA-50-5932 TCGA-50-5933 
       49.28         8.05         9.27         8.78        35.87        77.88 
TCGA-50-5935 TCGA-50-5936 TCGA-50-5939 TCGA-50-5941 TCGA-50-5942 TCGA-50-5944 
       21.47         8.45        15.12         9.37         4.44        12.26 
TCGA-50-5946 TCGA-50-6590 TCGA-50-6591 TCGA-50-6592 TCGA-50-6593 TCGA-50-6595 
       11.47        42.31         3.88        25.51        11.05         6.21 
TCGA-50-6597 TCGA-55-1592 TCGA-55-1595 TCGA-55-1596 TCGA-55-6543 TCGA-55-6642 
       33.37        23.05        48.62        45.17         0.07        32.61 
TCGA-55-6712 TCGA-64-1677 TCGA-64-1678 TCGA-64-1680 TCGA-64-5774 TCGA-64-5779 
        0.79        20.65        39.09        37.02        83.84        16.67 
TCGA-64-5815 TCGA-67-3771 TCGA-67-3772 TCGA-67-3773 TCGA-67-3774 TCGA-67-6215 
        7.33         1.97         0.59         2.04         0.59         0.89 
TCGA-67-6216 TCGA-67-6217 TCGA-71-6725 TCGA-73-4658 TCGA-73-4659 TCGA-73-4662 
        0.69        13.87         2.01        52.57        23.38        29.95 
TCGA-73-4666 TCGA-73-4668 TCGA-73-4670 TCGA-73-4675 TCGA-73-4676 TCGA-73-4677 
       20.28        15.35         0.46         1.32         4.01         1.25 
TCGA-91-6828 TCGA-91-6831 TCGA-91-6835 TCGA-91-6836 
        1.22         1.28         1.15         0.36 

  MARCO MUTATED MARCO WILD-TYPE 
           0.10            0.07 
  MARCO MUTATED MARCO WILD-TYPE 
          56.81           85.32 
  MARCO MUTATED MARCO WILD-TYPE 
          19.92           13.51 
[1] "0.1 - 56.8 (19.9)" "0.1 - 85.3 (13.5)"
     TCGA-05-4249      TCGA-05-4250      TCGA-05-4382      TCGA-05-4384 
"MARCO WILD-TYPE" "MARCO WILD-TYPE"   "MARCO MUTATED" "MARCO WILD-TYPE" 
     TCGA-05-4390      TCGA-05-4396      TCGA-05-4397      TCGA-05-4398 
"MARCO WILD-TYPE" "MARCO WILD-TYPE" "MARCO WILD-TYPE" "MARCO WILD-TYPE" 
     TCGA-05-4402      TCGA-05-4405      TCGA-05-4415      TCGA-05-4417 
"MARCO WILD-TYPE" "MARCO WILD-TYPE" "MARCO WILD-TYPE" "MARCO WILD-TYPE" 
     TCGA-05-4418      TCGA-05-4420      TCGA-05-4424      TCGA-05-4426 
"MARCO WILD-TYPE" "MARCO WILD-TYPE" "MARCO WILD-TYPE" "MARCO WILD-TYPE" 
     TCGA-05-4427      TCGA-05-4430      TCGA-05-4432      TCGA-05-4433 
"MARCO WILD-TYPE" "MARCO WILD-TYPE" "MARCO WILD-TYPE" "MARCO WILD-TYPE" 
     TCGA-05-4434      TCGA-05-5420      TCGA-05-5423      TCGA-05-5425 
"MARCO WILD-TYPE" "MARCO WILD-TYPE" "MARCO WILD-TYPE" "MARCO WILD-TYPE" 
     TCGA-05-5429      TCGA-05-5715      TCGA-35-3615      TCGA-35-4122 
  "MARCO MUTATED" "MARCO WILD-TYPE" "MARCO WILD-TYPE" "MARCO WILD-TYPE" 
     TCGA-35-4123      TCGA-35-5375      TCGA-38-4625      TCGA-38-4626 
"MARCO WILD-TYPE" "MARCO WILD-TYPE" "MARCO WILD-TYPE" "MARCO WILD-TYPE" 
     TCGA-38-4627      TCGA-38-4628      TCGA-38-4629      TCGA-38-4630 
"MARCO WILD-TYPE" "MARCO WILD-TYPE" "MARCO WILD-TYPE" "MARCO WILD-TYPE" 
     TCGA-38-4631      TCGA-38-4632      TCGA-38-6178      TCGA-44-2655 
"MARCO WILD-TYPE"   "MARCO MUTATED" "MARCO WILD-TYPE" "MARCO WILD-TYPE" 
     TCGA-44-2656      TCGA-44-2657      TCGA-44-2659      TCGA-44-2661 
"MARCO WILD-TYPE" "MARCO WILD-TYPE" "MARCO WILD-TYPE" "MARCO WILD-TYPE" 
     TCGA-44-2662      TCGA-44-2665      TCGA-44-2666      TCGA-44-2668 
"MARCO WILD-TYPE" "MARCO WILD-TYPE" "MARCO WILD-TYPE" "MARCO WILD-TYPE" 
     TCGA-44-3396      TCGA-44-3398      TCGA-44-3918      TCGA-44-3919 
"MARCO WILD-TYPE" "MARCO WILD-TYPE"   "MARCO MUTATED" "MARCO WILD-TYPE" 
     TCGA-44-4112      TCGA-44-5643      TCGA-44-5645      TCGA-44-6144 
"MARCO WILD-TYPE" "MARCO WILD-TYPE" "MARCO WILD-TYPE" "MARCO WILD-TYPE" 
     TCGA-44-6145      TCGA-44-6146      TCGA-44-6147      TCGA-44-6148 
"MARCO WILD-TYPE" "MARCO WILD-TYPE" "MARCO WILD-TYPE" "MARCO WILD-TYPE" 
     TCGA-44-6774      TCGA-44-6775      TCGA-44-6776      TCGA-44-6777 
"MARCO WILD-TYPE" "MARCO WILD-TYPE" "MARCO WILD-TYPE" "MARCO WILD-TYPE" 
     TCGA-44-6778      TCGA-44-6779      TCGA-49-4486      TCGA-49-4487 
"MARCO WILD-TYPE" "MARCO WILD-TYPE" "MARCO WILD-TYPE" "MARCO WILD-TYPE" 
     TCGA-49-4488      TCGA-49-4490      TCGA-49-4494      TCGA-49-4501 
"MARCO WILD-TYPE" "MARCO WILD-TYPE" "MARCO WILD-TYPE" "MARCO WILD-TYPE" 
     TCGA-49-4505      TCGA-49-4506      TCGA-49-4507      TCGA-49-4510 
"MARCO WILD-TYPE" "MARCO WILD-TYPE" "MARCO WILD-TYPE" "MARCO WILD-TYPE" 
     TCGA-49-4512      TCGA-49-4514      TCGA-49-6742      TCGA-49-6743 
"MARCO WILD-TYPE" "MARCO WILD-TYPE" "MARCO WILD-TYPE" "MARCO WILD-TYPE" 
     TCGA-49-6744      TCGA-49-6745      TCGA-50-5044      TCGA-50-5045 
"MARCO WILD-TYPE" "MARCO WILD-TYPE" "MARCO WILD-TYPE" "MARCO WILD-TYPE" 
     TCGA-50-5049      TCGA-50-5051      TCGA-50-5055      TCGA-50-5066 
"MARCO WILD-TYPE" "MARCO WILD-TYPE" "MARCO WILD-TYPE" "MARCO WILD-TYPE" 
     TCGA-50-5068      TCGA-50-5072      TCGA-50-5930      TCGA-50-5931 
"MARCO WILD-TYPE" "MARCO WILD-TYPE" "MARCO WILD-TYPE" "MARCO WILD-TYPE" 
     TCGA-50-5932      TCGA-50-5933      TCGA-50-5935      TCGA-50-5936 
"MARCO WILD-TYPE" "MARCO WILD-TYPE" "MARCO WILD-TYPE" "MARCO WILD-TYPE" 
     TCGA-50-5939      TCGA-50-5941      TCGA-50-5942      TCGA-50-5944 
"MARCO WILD-TYPE" "MARCO WILD-TYPE" "MARCO WILD-TYPE" "MARCO WILD-TYPE" 
     TCGA-50-5946      TCGA-50-6590      TCGA-50-6591      TCGA-50-6592 
"MARCO WILD-TYPE" "MARCO WILD-TYPE" "MARCO WILD-TYPE" "MARCO WILD-TYPE" 
     TCGA-50-6593      TCGA-50-6594      TCGA-50-6595      TCGA-50-6597 
"MARCO WILD-TYPE"   "MARCO MUTATED" "MARCO WILD-TYPE" "MARCO WILD-TYPE" 
     TCGA-55-1592      TCGA-55-1594      TCGA-55-1595      TCGA-55-1596 
"MARCO WILD-TYPE"   "MARCO MUTATED" "MARCO WILD-TYPE" "MARCO WILD-TYPE" 
     TCGA-55-5899      TCGA-55-6543      TCGA-55-6642      TCGA-55-6712 
  "MARCO MUTATED" "MARCO WILD-TYPE" "MARCO WILD-TYPE" "MARCO WILD-TYPE" 
     TCGA-64-1676      TCGA-64-1677      TCGA-64-1678      TCGA-64-1680 
  "MARCO MUTATED" "MARCO WILD-TYPE" "MARCO WILD-TYPE" "MARCO WILD-TYPE" 
     TCGA-64-5774      TCGA-64-5775      TCGA-64-5778      TCGA-64-5779 
"MARCO WILD-TYPE"   "MARCO MUTATED"   "MARCO MUTATED" "MARCO WILD-TYPE" 
     TCGA-64-5781      TCGA-64-5815      TCGA-67-3770      TCGA-67-3771 
  "MARCO MUTATED" "MARCO WILD-TYPE"   "MARCO MUTATED" "MARCO WILD-TYPE" 
     TCGA-67-3772      TCGA-67-3773      TCGA-67-3774      TCGA-67-6215 
"MARCO WILD-TYPE" "MARCO WILD-TYPE" "MARCO WILD-TYPE" "MARCO WILD-TYPE" 
     TCGA-67-6216      TCGA-67-6217      TCGA-71-6725      TCGA-73-4658 
"MARCO WILD-TYPE" "MARCO WILD-TYPE" "MARCO WILD-TYPE" "MARCO WILD-TYPE" 
     TCGA-73-4659      TCGA-73-4662      TCGA-73-4666      TCGA-73-4668 
"MARCO WILD-TYPE" "MARCO WILD-TYPE" "MARCO WILD-TYPE" "MARCO WILD-TYPE" 
     TCGA-73-4670      TCGA-73-4675      TCGA-73-4676      TCGA-73-4677 
"MARCO WILD-TYPE" "MARCO WILD-TYPE" "MARCO WILD-TYPE" "MARCO WILD-TYPE" 
     TCGA-91-6828      TCGA-91-6829      TCGA-91-6831      TCGA-91-6835 
"MARCO WILD-TYPE"   "MARCO MUTATED" "MARCO WILD-TYPE" "MARCO WILD-TYPE" 
     TCGA-91-6836 
"MARCO WILD-TYPE" 
     TCGA-05-4249      TCGA-05-4250      TCGA-05-4382      TCGA-05-4384 
"MARCO WILD-TYPE" "MARCO WILD-TYPE"   "MARCO MUTATED" "MARCO WILD-TYPE" 
     TCGA-05-4390      TCGA-05-4396      TCGA-05-4397      TCGA-05-4398 
"MARCO WILD-TYPE" "MARCO WILD-TYPE" "MARCO WILD-TYPE" "MARCO WILD-TYPE" 
     TCGA-05-4402      TCGA-05-4405      TCGA-05-4415      TCGA-05-4417 
"MARCO WILD-TYPE" "MARCO WILD-TYPE" "MARCO WILD-TYPE" "MARCO WILD-TYPE" 
     TCGA-05-4418      TCGA-05-4420      TCGA-05-4424      TCGA-05-4426 
"MARCO WILD-TYPE" "MARCO WILD-TYPE" "MARCO WILD-TYPE" "MARCO WILD-TYPE" 
     TCGA-05-4427      TCGA-05-4430      TCGA-05-4432      TCGA-05-4433 
"MARCO WILD-TYPE" "MARCO WILD-TYPE" "MARCO WILD-TYPE" "MARCO WILD-TYPE" 
     TCGA-05-4434      TCGA-05-5420      TCGA-05-5423      TCGA-05-5425 
"MARCO WILD-TYPE" "MARCO WILD-TYPE" "MARCO WILD-TYPE" "MARCO WILD-TYPE" 
     TCGA-05-5429      TCGA-05-5715      TCGA-35-3615      TCGA-35-4122 
  "MARCO MUTATED" "MARCO WILD-TYPE" "MARCO WILD-TYPE" "MARCO WILD-TYPE" 
     TCGA-35-4123      TCGA-35-5375      TCGA-38-4625      TCGA-38-4626 
"MARCO WILD-TYPE" "MARCO WILD-TYPE" "MARCO WILD-TYPE" "MARCO WILD-TYPE" 
     TCGA-38-4627      TCGA-38-4628      TCGA-38-4629      TCGA-38-4630 
"MARCO WILD-TYPE" "MARCO WILD-TYPE" "MARCO WILD-TYPE" "MARCO WILD-TYPE" 
     TCGA-38-4631      TCGA-38-4632      TCGA-38-6178      TCGA-44-2655 
"MARCO WILD-TYPE"   "MARCO MUTATED" "MARCO WILD-TYPE" "MARCO WILD-TYPE" 
     TCGA-44-2656      TCGA-44-2657      TCGA-44-2659      TCGA-44-2661 
"MARCO WILD-TYPE" "MARCO WILD-TYPE" "MARCO WILD-TYPE" "MARCO WILD-TYPE" 
     TCGA-44-2662      TCGA-44-2665      TCGA-44-2666      TCGA-44-2668 
"MARCO WILD-TYPE" "MARCO WILD-TYPE" "MARCO WILD-TYPE" "MARCO WILD-TYPE" 
     TCGA-44-3396      TCGA-44-3398      TCGA-44-3918      TCGA-44-3919 
"MARCO WILD-TYPE" "MARCO WILD-TYPE"   "MARCO MUTATED" "MARCO WILD-TYPE" 
     TCGA-44-4112      TCGA-44-5643      TCGA-44-5645      TCGA-44-6144 
"MARCO WILD-TYPE" "MARCO WILD-TYPE" "MARCO WILD-TYPE" "MARCO WILD-TYPE" 
     TCGA-44-6145      TCGA-44-6146      TCGA-44-6147      TCGA-44-6148 
"MARCO WILD-TYPE" "MARCO WILD-TYPE" "MARCO WILD-TYPE" "MARCO WILD-TYPE" 
     TCGA-44-6774      TCGA-44-6775      TCGA-44-6776      TCGA-44-6777 
"MARCO WILD-TYPE" "MARCO WILD-TYPE" "MARCO WILD-TYPE" "MARCO WILD-TYPE" 
     TCGA-44-6778      TCGA-44-6779      TCGA-49-4486      TCGA-49-4487 
"MARCO WILD-TYPE" "MARCO WILD-TYPE" "MARCO WILD-TYPE" "MARCO WILD-TYPE" 
     TCGA-49-4488      TCGA-49-4490      TCGA-49-4494      TCGA-49-4501 
"MARCO WILD-TYPE" "MARCO WILD-TYPE" "MARCO WILD-TYPE" "MARCO WILD-TYPE" 
     TCGA-49-4505      TCGA-49-4506      TCGA-49-4507      TCGA-49-4510 
"MARCO WILD-TYPE" "MARCO WILD-TYPE" "MARCO WILD-TYPE" "MARCO WILD-TYPE" 
     TCGA-49-4512      TCGA-49-4514      TCGA-49-6742      TCGA-49-6743 
"MARCO WILD-TYPE" "MARCO WILD-TYPE" "MARCO WILD-TYPE" "MARCO WILD-TYPE" 
     TCGA-49-6744      TCGA-49-6745      TCGA-50-5044      TCGA-50-5045 
"MARCO WILD-TYPE" "MARCO WILD-TYPE" "MARCO WILD-TYPE" "MARCO WILD-TYPE" 
     TCGA-50-5049      TCGA-50-5051      TCGA-50-5055      TCGA-50-5066 
"MARCO WILD-TYPE" "MARCO WILD-TYPE" "MARCO WILD-TYPE" "MARCO WILD-TYPE" 
     TCGA-50-5068      TCGA-50-5072      TCGA-50-5930      TCGA-50-5931 
"MARCO WILD-TYPE" "MARCO WILD-TYPE" "MARCO WILD-TYPE" "MARCO WILD-TYPE" 
     TCGA-50-5932      TCGA-50-5933      TCGA-50-5935      TCGA-50-5936 
"MARCO WILD-TYPE" "MARCO WILD-TYPE" "MARCO WILD-TYPE" "MARCO WILD-TYPE" 
     TCGA-50-5939      TCGA-50-5941      TCGA-50-5942      TCGA-50-5944 
"MARCO WILD-TYPE" "MARCO WILD-TYPE" "MARCO WILD-TYPE" "MARCO WILD-TYPE" 
     TCGA-50-5946      TCGA-50-6590      TCGA-50-6591      TCGA-50-6592 
"MARCO WILD-TYPE" "MARCO WILD-TYPE" "MARCO WILD-TYPE" "MARCO WILD-TYPE" 
     TCGA-50-6593      TCGA-50-6594      TCGA-50-6595      TCGA-50-6597 
"MARCO WILD-TYPE"   "MARCO MUTATED" "MARCO WILD-TYPE" "MARCO WILD-TYPE" 
     TCGA-55-1592      TCGA-55-1594      TCGA-55-1595      TCGA-55-1596 
"MARCO WILD-TYPE"   "MARCO MUTATED" "MARCO WILD-TYPE" "MARCO WILD-TYPE" 
     TCGA-55-5899      TCGA-55-6543      TCGA-55-6642      TCGA-55-6712 
  "MARCO MUTATED" "MARCO WILD-TYPE" "MARCO WILD-TYPE" "MARCO WILD-TYPE" 
     TCGA-64-1676      TCGA-64-1677      TCGA-64-1678      TCGA-64-1680 
  "MARCO MUTATED" "MARCO WILD-TYPE" "MARCO WILD-TYPE" "MARCO WILD-TYPE" 
     TCGA-64-5774      TCGA-64-5775      TCGA-64-5778      TCGA-64-5779 
"MARCO WILD-TYPE"   "MARCO MUTATED"   "MARCO MUTATED" "MARCO WILD-TYPE" 
     TCGA-64-5781      TCGA-64-5815      TCGA-67-3770      TCGA-67-3771 
  "MARCO MUTATED" "MARCO WILD-TYPE"   "MARCO MUTATED" "MARCO WILD-TYPE" 
     TCGA-67-3772      TCGA-67-3773      TCGA-67-3774      TCGA-67-6215 
"MARCO WILD-TYPE" "MARCO WILD-TYPE" "MARCO WILD-TYPE" "MARCO WILD-TYPE" 
     TCGA-67-6216      TCGA-67-6217      TCGA-71-6725      TCGA-73-4658 
"MARCO WILD-TYPE" "MARCO WILD-TYPE" "MARCO WILD-TYPE" "MARCO WILD-TYPE" 
     TCGA-73-4659      TCGA-73-4662      TCGA-73-4666      TCGA-73-4668 
"MARCO WILD-TYPE" "MARCO WILD-TYPE" "MARCO WILD-TYPE" "MARCO WILD-TYPE" 
     TCGA-73-4670      TCGA-73-4675      TCGA-73-4676      TCGA-73-4677 
"MARCO WILD-TYPE" "MARCO WILD-TYPE" "MARCO WILD-TYPE" "MARCO WILD-TYPE" 
     TCGA-91-6828      TCGA-91-6829      TCGA-91-6831      TCGA-91-6835 
"MARCO WILD-TYPE"   "MARCO MUTATED" "MARCO WILD-TYPE" "MARCO WILD-TYPE" 
     TCGA-91-6836 
"MARCO WILD-TYPE" 
     TCGA-05-4249      TCGA-05-4250      TCGA-05-4382      TCGA-05-4384 
"MARCO WILD-TYPE" "MARCO WILD-TYPE"   "MARCO MUTATED" "MARCO WILD-TYPE" 
     TCGA-05-4390      TCGA-05-4396      TCGA-05-4397      TCGA-05-4398 
"MARCO WILD-TYPE" "MARCO WILD-TYPE" "MARCO WILD-TYPE" "MARCO WILD-TYPE" 
     TCGA-05-4402      TCGA-05-4405      TCGA-05-4415      TCGA-05-4417 
"MARCO WILD-TYPE" "MARCO WILD-TYPE" "MARCO WILD-TYPE" "MARCO WILD-TYPE" 
     TCGA-05-4418      TCGA-05-4420      TCGA-05-4424      TCGA-05-4426 
"MARCO WILD-TYPE" "MARCO WILD-TYPE" "MARCO WILD-TYPE" "MARCO WILD-TYPE" 
     TCGA-05-4427      TCGA-05-4430      TCGA-05-4432      TCGA-05-4433 
"MARCO WILD-TYPE" "MARCO WILD-TYPE" "MARCO WILD-TYPE" "MARCO WILD-TYPE" 
     TCGA-05-4434      TCGA-05-5420      TCGA-05-5423      TCGA-05-5425 
"MARCO WILD-TYPE" "MARCO WILD-TYPE" "MARCO WILD-TYPE" "MARCO WILD-TYPE" 
     TCGA-05-5429      TCGA-05-5715      TCGA-35-3615      TCGA-35-4122 
  "MARCO MUTATED" "MARCO WILD-TYPE" "MARCO WILD-TYPE" "MARCO WILD-TYPE" 
     TCGA-35-4123      TCGA-35-5375      TCGA-38-4625      TCGA-38-4626 
"MARCO WILD-TYPE" "MARCO WILD-TYPE" "MARCO WILD-TYPE" "MARCO WILD-TYPE" 
     TCGA-38-4627      TCGA-38-4628      TCGA-38-4629      TCGA-38-4630 
"MARCO WILD-TYPE" "MARCO WILD-TYPE" "MARCO WILD-TYPE" "MARCO WILD-TYPE" 
     TCGA-38-4631      TCGA-38-4632      TCGA-38-6178      TCGA-44-2655 
"MARCO WILD-TYPE"   "MARCO MUTATED" "MARCO WILD-TYPE" "MARCO WILD-TYPE" 
     TCGA-44-2656      TCGA-44-2657      TCGA-44-2659      TCGA-44-2661 
"MARCO WILD-TYPE" "MARCO WILD-TYPE" "MARCO WILD-TYPE" "MARCO WILD-TYPE" 
     TCGA-44-2662      TCGA-44-2665      TCGA-44-2666      TCGA-44-2668 
"MARCO WILD-TYPE" "MARCO WILD-TYPE" "MARCO WILD-TYPE" "MARCO WILD-TYPE" 
     TCGA-44-3396      TCGA-44-3398      TCGA-44-3918      TCGA-44-3919 
"MARCO WILD-TYPE" "MARCO WILD-TYPE"   "MARCO MUTATED" "MARCO WILD-TYPE" 
     TCGA-44-4112      TCGA-44-5643      TCGA-44-5645      TCGA-44-6144 
"MARCO WILD-TYPE" "MARCO WILD-TYPE" "MARCO WILD-TYPE" "MARCO WILD-TYPE" 
     TCGA-44-6145      TCGA-44-6146      TCGA-44-6147      TCGA-44-6148 
"MARCO WILD-TYPE" "MARCO WILD-TYPE" "MARCO WILD-TYPE" "MARCO WILD-TYPE" 
     TCGA-44-6774      TCGA-44-6775      TCGA-44-6776      TCGA-44-6777 
"MARCO WILD-TYPE" "MARCO WILD-TYPE" "MARCO WILD-TYPE" "MARCO WILD-TYPE" 
     TCGA-44-6778      TCGA-44-6779      TCGA-49-4486      TCGA-49-4487 
"MARCO WILD-TYPE" "MARCO WILD-TYPE" "MARCO WILD-TYPE" "MARCO WILD-TYPE" 
     TCGA-49-4488      TCGA-49-4490      TCGA-49-4494      TCGA-49-4501 
"MARCO WILD-TYPE" "MARCO WILD-TYPE" "MARCO WILD-TYPE" "MARCO WILD-TYPE" 
     TCGA-49-4505      TCGA-49-4506      TCGA-49-4507      TCGA-49-4510 
"MARCO WILD-TYPE" "MARCO WILD-TYPE" "MARCO WILD-TYPE" "MARCO WILD-TYPE" 
     TCGA-49-4512      TCGA-49-4514      TCGA-49-6742      TCGA-49-6743 
"MARCO WILD-TYPE" "MARCO WILD-TYPE" "MARCO WILD-TYPE" "MARCO WILD-TYPE" 
     TCGA-49-6744      TCGA-49-6745      TCGA-50-5044      TCGA-50-5045 
"MARCO WILD-TYPE" "MARCO WILD-TYPE" "MARCO WILD-TYPE" "MARCO WILD-TYPE" 
     TCGA-50-5049      TCGA-50-5051      TCGA-50-5055      TCGA-50-5066 
"MARCO WILD-TYPE" "MARCO WILD-TYPE" "MARCO WILD-TYPE" "MARCO WILD-TYPE" 
     TCGA-50-5068      TCGA-50-5072      TCGA-50-5930      TCGA-50-5931 
"MARCO WILD-TYPE" "MARCO WILD-TYPE" "MARCO WILD-TYPE" "MARCO WILD-TYPE" 
     TCGA-50-5932      TCGA-50-5933      TCGA-50-5935      TCGA-50-5936 
"MARCO WILD-TYPE" "MARCO WILD-TYPE" "MARCO WILD-TYPE" "MARCO WILD-TYPE" 
     TCGA-50-5939      TCGA-50-5941      TCGA-50-5942      TCGA-50-5944 
"MARCO WILD-TYPE" "MARCO WILD-TYPE" "MARCO WILD-TYPE" "MARCO WILD-TYPE" 
     TCGA-50-5946      TCGA-50-6590      TCGA-50-6591      TCGA-50-6592 
"MARCO WILD-TYPE" "MARCO WILD-TYPE" "MARCO WILD-TYPE" "MARCO WILD-TYPE" 
     TCGA-50-6593      TCGA-50-6594      TCGA-50-6595      TCGA-50-6597 
"MARCO WILD-TYPE"   "MARCO MUTATED" "MARCO WILD-TYPE" "MARCO WILD-TYPE" 
     TCGA-55-1592      TCGA-55-1594      TCGA-55-1595      TCGA-55-1596 
"MARCO WILD-TYPE"   "MARCO MUTATED" "MARCO WILD-TYPE" "MARCO WILD-TYPE" 
     TCGA-55-5899      TCGA-55-6543      TCGA-55-6642      TCGA-55-6712 
  "MARCO MUTATED" "MARCO WILD-TYPE" "MARCO WILD-TYPE" "MARCO WILD-TYPE" 
     TCGA-64-1676      TCGA-64-1677      TCGA-64-1678      TCGA-64-1680 
  "MARCO MUTATED" "MARCO WILD-TYPE" "MARCO WILD-TYPE" "MARCO WILD-TYPE" 
     TCGA-64-5774      TCGA-64-5775      TCGA-64-5778      TCGA-64-5779 
"MARCO WILD-TYPE"   "MARCO MUTATED"   "MARCO MUTATED" "MARCO WILD-TYPE" 
     TCGA-64-5781      TCGA-64-5815      TCGA-67-3770      TCGA-67-3771 
  "MARCO MUTATED" "MARCO WILD-TYPE"   "MARCO MUTATED" "MARCO WILD-TYPE" 
     TCGA-67-3772      TCGA-67-3773      TCGA-67-3774      TCGA-67-6215 
"MARCO WILD-TYPE" "MARCO WILD-TYPE" "MARCO WILD-TYPE" "MARCO WILD-TYPE" 
     TCGA-67-6216      TCGA-67-6217      TCGA-71-6725      TCGA-73-4658 
"MARCO WILD-TYPE" "MARCO WILD-TYPE" "MARCO WILD-TYPE" "MARCO WILD-TYPE" 
     TCGA-73-4659      TCGA-73-4662      TCGA-73-4666      TCGA-73-4668 
"MARCO WILD-TYPE" "MARCO WILD-TYPE" "MARCO WILD-TYPE" "MARCO WILD-TYPE" 
     TCGA-73-4670      TCGA-73-4675      TCGA-73-4676      TCGA-73-4677 
"MARCO WILD-TYPE" "MARCO WILD-TYPE" "MARCO WILD-TYPE" "MARCO WILD-TYPE" 
     TCGA-91-6828      TCGA-91-6829      TCGA-91-6831      TCGA-91-6835 
"MARCO WILD-TYPE"   "MARCO MUTATED" "MARCO WILD-TYPE" "MARCO WILD-TYPE" 
     TCGA-91-6836 
"MARCO WILD-TYPE" 
[1] "hr=" "1.3"
D162V2, continuous
D162V3, binary
[1] "tbl2"
                 cls
clus              [,1] [,2]
  MARCO MUTATED      4    9
  MARCO WILD-TYPE   89   70
        clus
vv       MARCO MUTATED MARCO WILD-TYPE
  FEMALE             4              89
  MALE               9              70
D162V4, continuous
[1] "Remove cluster labels:" "MARCO MUTATED"         
clus
  MARCO MUTATED MARCO WILD-TYPE 
              1              11 
     TCGA-35-4122      TCGA-35-4123      TCGA-35-5375      TCGA-64-1677 
"MARCO WILD-TYPE" "MARCO WILD-TYPE" "MARCO WILD-TYPE" "MARCO WILD-TYPE" 
     TCGA-71-6725      TCGA-73-4659      TCGA-73-4662      TCGA-73-4666 
"MARCO WILD-TYPE" "MARCO WILD-TYPE" "MARCO WILD-TYPE" "MARCO WILD-TYPE" 
     TCGA-73-4668      TCGA-73-4676      TCGA-75-5122 
"MARCO WILD-TYPE" "MARCO WILD-TYPE" "MARCO WILD-TYPE" 
D162V5, multiclass
D162V6, multiclass
    clus
vv   MARCO MUTATED MARCO WILD-TYPE
  T1             4              37
  T2             6             102
  T3             2              12
  T4             1               7
D162V7, multiclass
       clus
vv      MARCO MUTATED MARCO WILD-TYPE
  N0                8              87
  N1                2              35
  N2+N3             3              32
D162V8, multiclass
    clus
vv   MARCO MUTATED MARCO WILD-TYPE
  M0            11             126
  M1             1               8
  MX             1              21
D162V9, multiclass
     clus
vv    MARCO MUTATED MARCO WILD-TYPE
  I               8              80
  II              0              33
  III             4              35
  IV              1               8
D162V10, binary
[1] "tbl2"
                 cls
clus              [,1] [,2]
  MARCO MUTATED      0   13
  MARCO WILD-TYPE   16  143
     clus
vv    MARCO MUTATED MARCO WILD-TYPE
  NO              0              16
  YES            13             143
D162V11, continuous
D162V12, continuous
D162V13, multiclass
                                             clus
vv                                            MARCO MUTATED MARCO WILD-TYPE
  CURRENT REFORMED SMOKER FOR < OR = 15 YEARS             6              56
  CURRENT REFORMED SMOKER FOR > 15 YEARS                  2              44
  CURRENT SMOKER                                          4              24
  LIFELONG NON-SMOKER                                     1              23
D162V14, continuous

Clustering(163) Variable = POT1 MUTATION ANALYSIS
D163V1, survival
                sevent
clus2             0  1
  POT1 MUTATED    6  2
  POT1 WILD-TYPE 93 48
  POT1 MUTATED POT1 WILD-TYPE 
             8            141 
  POT1 MUTATED POT1 WILD-TYPE 
             2             48 
$`POT1 MUTATED`
TCGA-05-4382 TCGA-05-4396 TCGA-38-4629 TCGA-44-2668 TCGA-44-6145 TCGA-44-6774 
       19.92         9.96        28.37         8.09         3.35         5.42 
TCGA-64-1678 TCGA-67-3771 
       39.09         1.97 

$`POT1 WILD-TYPE`
TCGA-05-4249 TCGA-05-4250 TCGA-05-4384 TCGA-05-4390 TCGA-05-4397 TCGA-05-4398 
       38.07         3.98        14.01        37.02        24.03        47.05 
TCGA-05-4402 TCGA-05-4405 TCGA-05-4415 TCGA-05-4417 TCGA-05-4418 TCGA-05-4420 
        8.02        20.05         2.96        14.93         8.98        29.95 
TCGA-05-4424 TCGA-05-4426 TCGA-05-4427 TCGA-05-4430 TCGA-05-4432 TCGA-05-4433 
       30.02        26.01        26.01        25.02        25.02        24.00 
TCGA-05-4434 TCGA-05-5420 TCGA-05-5423 TCGA-05-5425 TCGA-05-5429 TCGA-05-5715 
       15.02         1.02         4.96         2.96         0.99         2.04 
TCGA-35-3615 TCGA-35-4122 TCGA-35-4123 TCGA-35-5375 TCGA-38-4625 TCGA-38-4626 
        0.46         7.36         5.95         8.68        47.61        85.32 
TCGA-38-4627 TCGA-38-4628 TCGA-38-4630 TCGA-38-4631 TCGA-38-4632 TCGA-38-6178 
       37.71        49.02        35.28        11.64        44.61         5.19 
TCGA-44-2655 TCGA-44-2656 TCGA-44-2657 TCGA-44-2659 TCGA-44-2661 TCGA-44-2662 
       18.87        19.10        13.15        17.39         3.39        15.78 
TCGA-44-2665 TCGA-44-2666 TCGA-44-3396 TCGA-44-3398 TCGA-44-3918 TCGA-44-3919 
       13.15         3.19        10.22         8.32         6.44         6.21 
TCGA-44-4112 TCGA-44-5643 TCGA-44-5645 TCGA-44-6144 TCGA-44-6146 TCGA-44-6147 
        4.60         3.48         6.84         0.30         9.93         7.76 
TCGA-44-6148 TCGA-44-6775 TCGA-44-6776 TCGA-44-6777 TCGA-44-6778 TCGA-44-6779 
        3.12         2.70        63.72        32.45        36.49        16.41 
TCGA-49-4486 TCGA-49-4487 TCGA-49-4488 TCGA-49-4490 TCGA-49-4494 TCGA-49-4501 
       76.21        28.11        28.57        12.66        35.54        46.72 
TCGA-49-4505 TCGA-49-4506 TCGA-49-4507 TCGA-49-4510 TCGA-49-4512 TCGA-49-4514 
       14.07        32.84         8.81        29.46        29.75        43.20 
TCGA-49-6742 TCGA-49-6743 TCGA-49-6744 TCGA-49-6745 TCGA-50-5044 TCGA-50-5045 
       15.02        12.13        12.99         4.93        20.48        71.47 
TCGA-50-5049 TCGA-50-5051 TCGA-50-5055 TCGA-50-5066 TCGA-50-5068 TCGA-50-5072 
       48.82        14.96        25.81         9.76        49.28         8.05 
TCGA-50-5930 TCGA-50-5931 TCGA-50-5932 TCGA-50-5933 TCGA-50-5935 TCGA-50-5936 
        9.27         8.78        35.87        77.88        21.47         8.45 
TCGA-50-5939 TCGA-50-5941 TCGA-50-5942 TCGA-50-5944 TCGA-50-5946 TCGA-50-6590 
       15.12         9.37         4.44        12.26        11.47        42.31 
TCGA-50-6591 TCGA-50-6592 TCGA-50-6593 TCGA-50-6594 TCGA-50-6595 TCGA-50-6597 
        3.88        25.51        11.05        12.16         6.21        33.37 
TCGA-55-1592 TCGA-55-1594 TCGA-55-1595 TCGA-55-1596 TCGA-55-5899 TCGA-55-6543 
       23.05        38.73        48.62        45.17         2.86         0.07 
TCGA-55-6642 TCGA-55-6712 TCGA-64-1676 TCGA-64-1677 TCGA-64-1680 TCGA-64-5774 
       32.61         0.79        56.81        20.65        37.02        83.84 
TCGA-64-5775 TCGA-64-5778 TCGA-64-5779 TCGA-64-5781 TCGA-64-5815 TCGA-67-3770 
        0.10        30.44        16.67        39.52         7.33         0.99 
TCGA-67-3772 TCGA-67-3773 TCGA-67-3774 TCGA-67-6215 TCGA-67-6216 TCGA-67-6217 
        0.59         2.04         0.59         0.89         0.69        13.87 
TCGA-71-6725 TCGA-73-4658 TCGA-73-4659 TCGA-73-4662 TCGA-73-4666 TCGA-73-4668 
        2.01        52.57        23.38        29.95        20.28        15.35 
TCGA-73-4670 TCGA-73-4675 TCGA-73-4676 TCGA-73-4677 TCGA-91-6828 TCGA-91-6829 
        0.46         1.32         4.01         1.25         1.22        41.33 
TCGA-91-6831 TCGA-91-6835 TCGA-91-6836 
        1.28         1.15         0.36 

  POT1 MUTATED POT1 WILD-TYPE 
          1.97           0.07 
  POT1 MUTATED POT1 WILD-TYPE 
         39.09          85.32 
  POT1 MUTATED POT1 WILD-TYPE 
         9.025         14.010 
[1] "2.0 - 39.1 (9.0)"  "0.1 - 85.3 (14.0)"
    TCGA-05-4249     TCGA-05-4250     TCGA-05-4382     TCGA-05-4384 
"POT1 WILD-TYPE" "POT1 WILD-TYPE"   "POT1 MUTATED" "POT1 WILD-TYPE" 
    TCGA-05-4390     TCGA-05-4396     TCGA-05-4397     TCGA-05-4398 
"POT1 WILD-TYPE"   "POT1 MUTATED" "POT1 WILD-TYPE" "POT1 WILD-TYPE" 
    TCGA-05-4402     TCGA-05-4405     TCGA-05-4415     TCGA-05-4417 
"POT1 WILD-TYPE" "POT1 WILD-TYPE" "POT1 WILD-TYPE" "POT1 WILD-TYPE" 
    TCGA-05-4418     TCGA-05-4420     TCGA-05-4424     TCGA-05-4426 
"POT1 WILD-TYPE" "POT1 WILD-TYPE" "POT1 WILD-TYPE" "POT1 WILD-TYPE" 
    TCGA-05-4427     TCGA-05-4430     TCGA-05-4432     TCGA-05-4433 
"POT1 WILD-TYPE" "POT1 WILD-TYPE" "POT1 WILD-TYPE" "POT1 WILD-TYPE" 
    TCGA-05-4434     TCGA-05-5420     TCGA-05-5423     TCGA-05-5425 
"POT1 WILD-TYPE" "POT1 WILD-TYPE" "POT1 WILD-TYPE" "POT1 WILD-TYPE" 
    TCGA-05-5429     TCGA-05-5715     TCGA-35-3615     TCGA-35-4122 
"POT1 WILD-TYPE" "POT1 WILD-TYPE" "POT1 WILD-TYPE" "POT1 WILD-TYPE" 
    TCGA-35-4123     TCGA-35-5375     TCGA-38-4625     TCGA-38-4626 
"POT1 WILD-TYPE" "POT1 WILD-TYPE" "POT1 WILD-TYPE" "POT1 WILD-TYPE" 
    TCGA-38-4627     TCGA-38-4628     TCGA-38-4629     TCGA-38-4630 
"POT1 WILD-TYPE" "POT1 WILD-TYPE"   "POT1 MUTATED" "POT1 WILD-TYPE" 
    TCGA-38-4631     TCGA-38-4632     TCGA-38-6178     TCGA-44-2655 
"POT1 WILD-TYPE" "POT1 WILD-TYPE" "POT1 WILD-TYPE" "POT1 WILD-TYPE" 
    TCGA-44-2656     TCGA-44-2657     TCGA-44-2659     TCGA-44-2661 
"POT1 WILD-TYPE" "POT1 WILD-TYPE" "POT1 WILD-TYPE" "POT1 WILD-TYPE" 
    TCGA-44-2662     TCGA-44-2665     TCGA-44-2666     TCGA-44-2668 
"POT1 WILD-TYPE" "POT1 WILD-TYPE" "POT1 WILD-TYPE"   "POT1 MUTATED" 
    TCGA-44-3396     TCGA-44-3398     TCGA-44-3918     TCGA-44-3919 
"POT1 WILD-TYPE" "POT1 WILD-TYPE" "POT1 WILD-TYPE" "POT1 WILD-TYPE" 
    TCGA-44-4112     TCGA-44-5643     TCGA-44-5645     TCGA-44-6144 
"POT1 WILD-TYPE" "POT1 WILD-TYPE" "POT1 WILD-TYPE" "POT1 WILD-TYPE" 
    TCGA-44-6145     TCGA-44-6146     TCGA-44-6147     TCGA-44-6148 
  "POT1 MUTATED" "POT1 WILD-TYPE" "POT1 WILD-TYPE" "POT1 WILD-TYPE" 
    TCGA-44-6774     TCGA-44-6775     TCGA-44-6776     TCGA-44-6777 
  "POT1 MUTATED" "POT1 WILD-TYPE" "POT1 WILD-TYPE" "POT1 WILD-TYPE" 
    TCGA-44-6778     TCGA-44-6779     TCGA-49-4486     TCGA-49-4487 
"POT1 WILD-TYPE" "POT1 WILD-TYPE" "POT1 WILD-TYPE" "POT1 WILD-TYPE" 
    TCGA-49-4488     TCGA-49-4490     TCGA-49-4494     TCGA-49-4501 
"POT1 WILD-TYPE" "POT1 WILD-TYPE" "POT1 WILD-TYPE" "POT1 WILD-TYPE" 
    TCGA-49-4505     TCGA-49-4506     TCGA-49-4507     TCGA-49-4510 
"POT1 WILD-TYPE" "POT1 WILD-TYPE" "POT1 WILD-TYPE" "POT1 WILD-TYPE" 
    TCGA-49-4512     TCGA-49-4514     TCGA-49-6742     TCGA-49-6743 
"POT1 WILD-TYPE" "POT1 WILD-TYPE" "POT1 WILD-TYPE" "POT1 WILD-TYPE" 
    TCGA-49-6744     TCGA-49-6745     TCGA-50-5044     TCGA-50-5045 
"POT1 WILD-TYPE" "POT1 WILD-TYPE" "POT1 WILD-TYPE" "POT1 WILD-TYPE" 
    TCGA-50-5049     TCGA-50-5051     TCGA-50-5055     TCGA-50-5066 
"POT1 WILD-TYPE" "POT1 WILD-TYPE" "POT1 WILD-TYPE" "POT1 WILD-TYPE" 
    TCGA-50-5068     TCGA-50-5072     TCGA-50-5930     TCGA-50-5931 
"POT1 WILD-TYPE" "POT1 WILD-TYPE" "POT1 WILD-TYPE" "POT1 WILD-TYPE" 
    TCGA-50-5932     TCGA-50-5933     TCGA-50-5935     TCGA-50-5936 
"POT1 WILD-TYPE" "POT1 WILD-TYPE" "POT1 WILD-TYPE" "POT1 WILD-TYPE" 
    TCGA-50-5939     TCGA-50-5941     TCGA-50-5942     TCGA-50-5944 
"POT1 WILD-TYPE" "POT1 WILD-TYPE" "POT1 WILD-TYPE" "POT1 WILD-TYPE" 
    TCGA-50-5946     TCGA-50-6590     TCGA-50-6591     TCGA-50-6592 
"POT1 WILD-TYPE" "POT1 WILD-TYPE" "POT1 WILD-TYPE" "POT1 WILD-TYPE" 
    TCGA-50-6593     TCGA-50-6594     TCGA-50-6595     TCGA-50-6597 
"POT1 WILD-TYPE" "POT1 WILD-TYPE" "POT1 WILD-TYPE" "POT1 WILD-TYPE" 
    TCGA-55-1592     TCGA-55-1594     TCGA-55-1595     TCGA-55-1596 
"POT1 WILD-TYPE" "POT1 WILD-TYPE" "POT1 WILD-TYPE" "POT1 WILD-TYPE" 
    TCGA-55-5899     TCGA-55-6543     TCGA-55-6642     TCGA-55-6712 
"POT1 WILD-TYPE" "POT1 WILD-TYPE" "POT1 WILD-TYPE" "POT1 WILD-TYPE" 
    TCGA-64-1676     TCGA-64-1677     TCGA-64-1678     TCGA-64-1680 
"POT1 WILD-TYPE" "POT1 WILD-TYPE"   "POT1 MUTATED" "POT1 WILD-TYPE" 
    TCGA-64-5774     TCGA-64-5775     TCGA-64-5778     TCGA-64-5779 
"POT1 WILD-TYPE" "POT1 WILD-TYPE" "POT1 WILD-TYPE" "POT1 WILD-TYPE" 
    TCGA-64-5781     TCGA-64-5815     TCGA-67-3770     TCGA-67-3771 
"POT1 WILD-TYPE" "POT1 WILD-TYPE" "POT1 WILD-TYPE"   "POT1 MUTATED" 
    TCGA-67-3772     TCGA-67-3773     TCGA-67-3774     TCGA-67-6215 
"POT1 WILD-TYPE" "POT1 WILD-TYPE" "POT1 WILD-TYPE" "POT1 WILD-TYPE" 
    TCGA-67-6216     TCGA-67-6217     TCGA-71-6725     TCGA-73-4658 
"POT1 WILD-TYPE" "POT1 WILD-TYPE" "POT1 WILD-TYPE" "POT1 WILD-TYPE" 
    TCGA-73-4659     TCGA-73-4662     TCGA-73-4666     TCGA-73-4668 
"POT1 WILD-TYPE" "POT1 WILD-TYPE" "POT1 WILD-TYPE" "POT1 WILD-TYPE" 
    TCGA-73-4670     TCGA-73-4675     TCGA-73-4676     TCGA-73-4677 
"POT1 WILD-TYPE" "POT1 WILD-TYPE" "POT1 WILD-TYPE" "POT1 WILD-TYPE" 
    TCGA-91-6828     TCGA-91-6829     TCGA-91-6831     TCGA-91-6835 
"POT1 WILD-TYPE" "POT1 WILD-TYPE" "POT1 WILD-TYPE" "POT1 WILD-TYPE" 
    TCGA-91-6836 
"POT1 WILD-TYPE" 
    TCGA-05-4249     TCGA-05-4250     TCGA-05-4382     TCGA-05-4384 
"POT1 WILD-TYPE" "POT1 WILD-TYPE"   "POT1 MUTATED" "POT1 WILD-TYPE" 
    TCGA-05-4390     TCGA-05-4396     TCGA-05-4397     TCGA-05-4398 
"POT1 WILD-TYPE"   "POT1 MUTATED" "POT1 WILD-TYPE" "POT1 WILD-TYPE" 
    TCGA-05-4402     TCGA-05-4405     TCGA-05-4415     TCGA-05-4417 
"POT1 WILD-TYPE" "POT1 WILD-TYPE" "POT1 WILD-TYPE" "POT1 WILD-TYPE" 
    TCGA-05-4418     TCGA-05-4420     TCGA-05-4424     TCGA-05-4426 
"POT1 WILD-TYPE" "POT1 WILD-TYPE" "POT1 WILD-TYPE" "POT1 WILD-TYPE" 
    TCGA-05-4427     TCGA-05-4430     TCGA-05-4432     TCGA-05-4433 
"POT1 WILD-TYPE" "POT1 WILD-TYPE" "POT1 WILD-TYPE" "POT1 WILD-TYPE" 
    TCGA-05-4434     TCGA-05-5420     TCGA-05-5423     TCGA-05-5425 
"POT1 WILD-TYPE" "POT1 WILD-TYPE" "POT1 WILD-TYPE" "POT1 WILD-TYPE" 
    TCGA-05-5429     TCGA-05-5715     TCGA-35-3615     TCGA-35-4122 
"POT1 WILD-TYPE" "POT1 WILD-TYPE" "POT1 WILD-TYPE" "POT1 WILD-TYPE" 
    TCGA-35-4123     TCGA-35-5375     TCGA-38-4625     TCGA-38-4626 
"POT1 WILD-TYPE" "POT1 WILD-TYPE" "POT1 WILD-TYPE" "POT1 WILD-TYPE" 
    TCGA-38-4627     TCGA-38-4628     TCGA-38-4629     TCGA-38-4630 
"POT1 WILD-TYPE" "POT1 WILD-TYPE"   "POT1 MUTATED" "POT1 WILD-TYPE" 
    TCGA-38-4631     TCGA-38-4632     TCGA-38-6178     TCGA-44-2655 
"POT1 WILD-TYPE" "POT1 WILD-TYPE" "POT1 WILD-TYPE" "POT1 WILD-TYPE" 
    TCGA-44-2656     TCGA-44-2657     TCGA-44-2659     TCGA-44-2661 
"POT1 WILD-TYPE" "POT1 WILD-TYPE" "POT1 WILD-TYPE" "POT1 WILD-TYPE" 
    TCGA-44-2662     TCGA-44-2665     TCGA-44-2666     TCGA-44-2668 
"POT1 WILD-TYPE" "POT1 WILD-TYPE" "POT1 WILD-TYPE"   "POT1 MUTATED" 
    TCGA-44-3396     TCGA-44-3398     TCGA-44-3918     TCGA-44-3919 
"POT1 WILD-TYPE" "POT1 WILD-TYPE" "POT1 WILD-TYPE" "POT1 WILD-TYPE" 
    TCGA-44-4112     TCGA-44-5643     TCGA-44-5645     TCGA-44-6144 
"POT1 WILD-TYPE" "POT1 WILD-TYPE" "POT1 WILD-TYPE" "POT1 WILD-TYPE" 
    TCGA-44-6145     TCGA-44-6146     TCGA-44-6147     TCGA-44-6148 
  "POT1 MUTATED" "POT1 WILD-TYPE" "POT1 WILD-TYPE" "POT1 WILD-TYPE" 
    TCGA-44-6774     TCGA-44-6775     TCGA-44-6776     TCGA-44-6777 
  "POT1 MUTATED" "POT1 WILD-TYPE" "POT1 WILD-TYPE" "POT1 WILD-TYPE" 
    TCGA-44-6778     TCGA-44-6779     TCGA-49-4486     TCGA-49-4487 
"POT1 WILD-TYPE" "POT1 WILD-TYPE" "POT1 WILD-TYPE" "POT1 WILD-TYPE" 
    TCGA-49-4488     TCGA-49-4490     TCGA-49-4494     TCGA-49-4501 
"POT1 WILD-TYPE" "POT1 WILD-TYPE" "POT1 WILD-TYPE" "POT1 WILD-TYPE" 
    TCGA-49-4505     TCGA-49-4506     TCGA-49-4507     TCGA-49-4510 
"POT1 WILD-TYPE" "POT1 WILD-TYPE" "POT1 WILD-TYPE" "POT1 WILD-TYPE" 
    TCGA-49-4512     TCGA-49-4514     TCGA-49-6742     TCGA-49-6743 
"POT1 WILD-TYPE" "POT1 WILD-TYPE" "POT1 WILD-TYPE" "POT1 WILD-TYPE" 
    TCGA-49-6744     TCGA-49-6745     TCGA-50-5044     TCGA-50-5045 
"POT1 WILD-TYPE" "POT1 WILD-TYPE" "POT1 WILD-TYPE" "POT1 WILD-TYPE" 
    TCGA-50-5049     TCGA-50-5051     TCGA-50-5055     TCGA-50-5066 
"POT1 WILD-TYPE" "POT1 WILD-TYPE" "POT1 WILD-TYPE" "POT1 WILD-TYPE" 
    TCGA-50-5068     TCGA-50-5072     TCGA-50-5930     TCGA-50-5931 
"POT1 WILD-TYPE" "POT1 WILD-TYPE" "POT1 WILD-TYPE" "POT1 WILD-TYPE" 
    TCGA-50-5932     TCGA-50-5933     TCGA-50-5935     TCGA-50-5936 
"POT1 WILD-TYPE" "POT1 WILD-TYPE" "POT1 WILD-TYPE" "POT1 WILD-TYPE" 
    TCGA-50-5939     TCGA-50-5941     TCGA-50-5942     TCGA-50-5944 
"POT1 WILD-TYPE" "POT1 WILD-TYPE" "POT1 WILD-TYPE" "POT1 WILD-TYPE" 
    TCGA-50-5946     TCGA-50-6590     TCGA-50-6591     TCGA-50-6592 
"POT1 WILD-TYPE" "POT1 WILD-TYPE" "POT1 WILD-TYPE" "POT1 WILD-TYPE" 
    TCGA-50-6593     TCGA-50-6594     TCGA-50-6595     TCGA-50-6597 
"POT1 WILD-TYPE" "POT1 WILD-TYPE" "POT1 WILD-TYPE" "POT1 WILD-TYPE" 
    TCGA-55-1592     TCGA-55-1594     TCGA-55-1595     TCGA-55-1596 
"POT1 WILD-TYPE" "POT1 WILD-TYPE" "POT1 WILD-TYPE" "POT1 WILD-TYPE" 
    TCGA-55-5899     TCGA-55-6543     TCGA-55-6642     TCGA-55-6712 
"POT1 WILD-TYPE" "POT1 WILD-TYPE" "POT1 WILD-TYPE" "POT1 WILD-TYPE" 
    TCGA-64-1676     TCGA-64-1677     TCGA-64-1678     TCGA-64-1680 
"POT1 WILD-TYPE" "POT1 WILD-TYPE"   "POT1 MUTATED" "POT1 WILD-TYPE" 
    TCGA-64-5774     TCGA-64-5775     TCGA-64-5778     TCGA-64-5779 
"POT1 WILD-TYPE" "POT1 WILD-TYPE" "POT1 WILD-TYPE" "POT1 WILD-TYPE" 
    TCGA-64-5781     TCGA-64-5815     TCGA-67-3770     TCGA-67-3771 
"POT1 WILD-TYPE" "POT1 WILD-TYPE" "POT1 WILD-TYPE"   "POT1 MUTATED" 
    TCGA-67-3772     TCGA-67-3773     TCGA-67-3774     TCGA-67-6215 
"POT1 WILD-TYPE" "POT1 WILD-TYPE" "POT1 WILD-TYPE" "POT1 WILD-TYPE" 
    TCGA-67-6216     TCGA-67-6217     TCGA-71-6725     TCGA-73-4658 
"POT1 WILD-TYPE" "POT1 WILD-TYPE" "POT1 WILD-TYPE" "POT1 WILD-TYPE" 
    TCGA-73-4659     TCGA-73-4662     TCGA-73-4666     TCGA-73-4668 
"POT1 WILD-TYPE" "POT1 WILD-TYPE" "POT1 WILD-TYPE" "POT1 WILD-TYPE" 
    TCGA-73-4670     TCGA-73-4675     TCGA-73-4676     TCGA-73-4677 
"POT1 WILD-TYPE" "POT1 WILD-TYPE" "POT1 WILD-TYPE" "POT1 WILD-TYPE" 
    TCGA-91-6828     TCGA-91-6829     TCGA-91-6831     TCGA-91-6835 
"POT1 WILD-TYPE" "POT1 WILD-TYPE" "POT1 WILD-TYPE" "POT1 WILD-TYPE" 
    TCGA-91-6836 
"POT1 WILD-TYPE" 
    TCGA-05-4249     TCGA-05-4250     TCGA-05-4382     TCGA-05-4384 
"POT1 WILD-TYPE" "POT1 WILD-TYPE"   "POT1 MUTATED" "POT1 WILD-TYPE" 
    TCGA-05-4390     TCGA-05-4396     TCGA-05-4397     TCGA-05-4398 
"POT1 WILD-TYPE"   "POT1 MUTATED" "POT1 WILD-TYPE" "POT1 WILD-TYPE" 
    TCGA-05-4402     TCGA-05-4405     TCGA-05-4415     TCGA-05-4417 
"POT1 WILD-TYPE" "POT1 WILD-TYPE" "POT1 WILD-TYPE" "POT1 WILD-TYPE" 
    TCGA-05-4418     TCGA-05-4420     TCGA-05-4424     TCGA-05-4426 
"POT1 WILD-TYPE" "POT1 WILD-TYPE" "POT1 WILD-TYPE" "POT1 WILD-TYPE" 
    TCGA-05-4427     TCGA-05-4430     TCGA-05-4432     TCGA-05-4433 
"POT1 WILD-TYPE" "POT1 WILD-TYPE" "POT1 WILD-TYPE" "POT1 WILD-TYPE" 
    TCGA-05-4434     TCGA-05-5420     TCGA-05-5423     TCGA-05-5425 
"POT1 WILD-TYPE" "POT1 WILD-TYPE" "POT1 WILD-TYPE" "POT1 WILD-TYPE" 
    TCGA-05-5429     TCGA-05-5715     TCGA-35-3615     TCGA-35-4122 
"POT1 WILD-TYPE" "POT1 WILD-TYPE" "POT1 WILD-TYPE" "POT1 WILD-TYPE" 
    TCGA-35-4123     TCGA-35-5375     TCGA-38-4625     TCGA-38-4626 
"POT1 WILD-TYPE" "POT1 WILD-TYPE" "POT1 WILD-TYPE" "POT1 WILD-TYPE" 
    TCGA-38-4627     TCGA-38-4628     TCGA-38-4629     TCGA-38-4630 
"POT1 WILD-TYPE" "POT1 WILD-TYPE"   "POT1 MUTATED" "POT1 WILD-TYPE" 
    TCGA-38-4631     TCGA-38-4632     TCGA-38-6178     TCGA-44-2655 
"POT1 WILD-TYPE" "POT1 WILD-TYPE" "POT1 WILD-TYPE" "POT1 WILD-TYPE" 
    TCGA-44-2656     TCGA-44-2657     TCGA-44-2659     TCGA-44-2661 
"POT1 WILD-TYPE" "POT1 WILD-TYPE" "POT1 WILD-TYPE" "POT1 WILD-TYPE" 
    TCGA-44-2662     TCGA-44-2665     TCGA-44-2666     TCGA-44-2668 
"POT1 WILD-TYPE" "POT1 WILD-TYPE" "POT1 WILD-TYPE"   "POT1 MUTATED" 
    TCGA-44-3396     TCGA-44-3398     TCGA-44-3918     TCGA-44-3919 
"POT1 WILD-TYPE" "POT1 WILD-TYPE" "POT1 WILD-TYPE" "POT1 WILD-TYPE" 
    TCGA-44-4112     TCGA-44-5643     TCGA-44-5645     TCGA-44-6144 
"POT1 WILD-TYPE" "POT1 WILD-TYPE" "POT1 WILD-TYPE" "POT1 WILD-TYPE" 
    TCGA-44-6145     TCGA-44-6146     TCGA-44-6147     TCGA-44-6148 
  "POT1 MUTATED" "POT1 WILD-TYPE" "POT1 WILD-TYPE" "POT1 WILD-TYPE" 
    TCGA-44-6774     TCGA-44-6775     TCGA-44-6776     TCGA-44-6777 
  "POT1 MUTATED" "POT1 WILD-TYPE" "POT1 WILD-TYPE" "POT1 WILD-TYPE" 
    TCGA-44-6778     TCGA-44-6779     TCGA-49-4486     TCGA-49-4487 
"POT1 WILD-TYPE" "POT1 WILD-TYPE" "POT1 WILD-TYPE" "POT1 WILD-TYPE" 
    TCGA-49-4488     TCGA-49-4490     TCGA-49-4494     TCGA-49-4501 
"POT1 WILD-TYPE" "POT1 WILD-TYPE" "POT1 WILD-TYPE" "POT1 WILD-TYPE" 
    TCGA-49-4505     TCGA-49-4506     TCGA-49-4507     TCGA-49-4510 
"POT1 WILD-TYPE" "POT1 WILD-TYPE" "POT1 WILD-TYPE" "POT1 WILD-TYPE" 
    TCGA-49-4512     TCGA-49-4514     TCGA-49-6742     TCGA-49-6743 
"POT1 WILD-TYPE" "POT1 WILD-TYPE" "POT1 WILD-TYPE" "POT1 WILD-TYPE" 
    TCGA-49-6744     TCGA-49-6745     TCGA-50-5044     TCGA-50-5045 
"POT1 WILD-TYPE" "POT1 WILD-TYPE" "POT1 WILD-TYPE" "POT1 WILD-TYPE" 
    TCGA-50-5049     TCGA-50-5051     TCGA-50-5055     TCGA-50-5066 
"POT1 WILD-TYPE" "POT1 WILD-TYPE" "POT1 WILD-TYPE" "POT1 WILD-TYPE" 
    TCGA-50-5068     TCGA-50-5072     TCGA-50-5930     TCGA-50-5931 
"POT1 WILD-TYPE" "POT1 WILD-TYPE" "POT1 WILD-TYPE" "POT1 WILD-TYPE" 
    TCGA-50-5932     TCGA-50-5933     TCGA-50-5935     TCGA-50-5936 
"POT1 WILD-TYPE" "POT1 WILD-TYPE" "POT1 WILD-TYPE" "POT1 WILD-TYPE" 
    TCGA-50-5939     TCGA-50-5941     TCGA-50-5942     TCGA-50-5944 
"POT1 WILD-TYPE" "POT1 WILD-TYPE" "POT1 WILD-TYPE" "POT1 WILD-TYPE" 
    TCGA-50-5946     TCGA-50-6590     TCGA-50-6591     TCGA-50-6592 
"POT1 WILD-TYPE" "POT1 WILD-TYPE" "POT1 WILD-TYPE" "POT1 WILD-TYPE" 
    TCGA-50-6593     TCGA-50-6594     TCGA-50-6595     TCGA-50-6597 
"POT1 WILD-TYPE" "POT1 WILD-TYPE" "POT1 WILD-TYPE" "POT1 WILD-TYPE" 
    TCGA-55-1592     TCGA-55-1594     TCGA-55-1595     TCGA-55-1596 
"POT1 WILD-TYPE" "POT1 WILD-TYPE" "POT1 WILD-TYPE" "POT1 WILD-TYPE" 
    TCGA-55-5899     TCGA-55-6543     TCGA-55-6642     TCGA-55-6712 
"POT1 WILD-TYPE" "POT1 WILD-TYPE" "POT1 WILD-TYPE" "POT1 WILD-TYPE" 
    TCGA-64-1676     TCGA-64-1677     TCGA-64-1678     TCGA-64-1680 
"POT1 WILD-TYPE" "POT1 WILD-TYPE"   "POT1 MUTATED" "POT1 WILD-TYPE" 
    TCGA-64-5774     TCGA-64-5775     TCGA-64-5778     TCGA-64-5779 
"POT1 WILD-TYPE" "POT1 WILD-TYPE" "POT1 WILD-TYPE" "POT1 WILD-TYPE" 
    TCGA-64-5781     TCGA-64-5815     TCGA-67-3770     TCGA-67-3771 
"POT1 WILD-TYPE" "POT1 WILD-TYPE" "POT1 WILD-TYPE"   "POT1 MUTATED" 
    TCGA-67-3772     TCGA-67-3773     TCGA-67-3774     TCGA-67-6215 
"POT1 WILD-TYPE" "POT1 WILD-TYPE" "POT1 WILD-TYPE" "POT1 WILD-TYPE" 
    TCGA-67-6216     TCGA-67-6217     TCGA-71-6725     TCGA-73-4658 
"POT1 WILD-TYPE" "POT1 WILD-TYPE" "POT1 WILD-TYPE" "POT1 WILD-TYPE" 
    TCGA-73-4659     TCGA-73-4662     TCGA-73-4666     TCGA-73-4668 
"POT1 WILD-TYPE" "POT1 WILD-TYPE" "POT1 WILD-TYPE" "POT1 WILD-TYPE" 
    TCGA-73-4670     TCGA-73-4675     TCGA-73-4676     TCGA-73-4677 
"POT1 WILD-TYPE" "POT1 WILD-TYPE" "POT1 WILD-TYPE" "POT1 WILD-TYPE" 
    TCGA-91-6828     TCGA-91-6829     TCGA-91-6831     TCGA-91-6835 
"POT1 WILD-TYPE" "POT1 WILD-TYPE" "POT1 WILD-TYPE" "POT1 WILD-TYPE" 
    TCGA-91-6836 
"POT1 WILD-TYPE" 
[1] "hr=" "1.2"
D163V2, continuous
D163V3, binary
[1] "tbl2"
                cls
clus             [,1] [,2]
  POT1 MUTATED      4    4
  POT1 WILD-TYPE   89   75
        clus
vv       POT1 MUTATED POT1 WILD-TYPE
  FEMALE            4             89
  MALE              4             75
D163V4, continuous
D163V5, multiclass
D163V6, multiclass
    clus
vv   POT1 MUTATED POT1 WILD-TYPE
  T1            3             38
  T2            3            105
  T3            1             13
  T4            1              7
D163V7, multiclass
       clus
vv      POT1 MUTATED POT1 WILD-TYPE
  N0               6             89
  N1               1             36
  N2+N3            1             34
D163V8, multiclass
    clus
vv   POT1 MUTATED POT1 WILD-TYPE
  M0            8            129
  M1            0              9
  MX            0             22
D163V9, multiclass
     clus
vv    POT1 MUTATED POT1 WILD-TYPE
  I              4             84
  II             2             31
  III            2             37
  IV             0              9
D163V10, binary
[1] "tbl2"
                cls
clus             [,1] [,2]
  POT1 MUTATED      0    8
  POT1 WILD-TYPE   16  148
     clus
vv    POT1 MUTATED POT1 WILD-TYPE
  NO             0             16
  YES            8            148
D163V11, continuous
D163V12, continuous
D163V13, multiclass
                                             clus
vv                                            POT1 MUTATED POT1 WILD-TYPE
  CURRENT REFORMED SMOKER FOR < OR = 15 YEARS            5             57
  CURRENT REFORMED SMOKER FOR > 15 YEARS                 2             44
  CURRENT SMOKER                                         1             27
  LIFELONG NON-SMOKER                                    0             24
D163V14, continuous

Clustering(164) Variable = ANKRD7 MUTATION ANALYSIS
D164V1, survival
                  sevent
clus2               0  1
  ANKRD7 MUTATED    3  3
  ANKRD7 WILD-TYPE 96 47
  ANKRD7 MUTATED ANKRD7 WILD-TYPE 
               6              143 
  ANKRD7 MUTATED ANKRD7 WILD-TYPE 
               3               47 
$`ANKRD7 MUTATED`
TCGA-05-4424 TCGA-44-3396 TCGA-50-6592 TCGA-73-4658 TCGA-73-4670 TCGA-91-6829 
       30.02        10.22        25.51        52.57         0.46        41.33 

$`ANKRD7 WILD-TYPE`
TCGA-05-4249 TCGA-05-4250 TCGA-05-4382 TCGA-05-4384 TCGA-05-4390 TCGA-05-4396 
       38.07         3.98        19.92        14.01        37.02         9.96 
TCGA-05-4397 TCGA-05-4398 TCGA-05-4402 TCGA-05-4405 TCGA-05-4415 TCGA-05-4417 
       24.03        47.05         8.02        20.05         2.96        14.93 
TCGA-05-4418 TCGA-05-4420 TCGA-05-4426 TCGA-05-4427 TCGA-05-4430 TCGA-05-4432 
        8.98        29.95        26.01        26.01        25.02        25.02 
TCGA-05-4433 TCGA-05-4434 TCGA-05-5420 TCGA-05-5423 TCGA-05-5425 TCGA-05-5429 
       24.00        15.02         1.02         4.96         2.96         0.99 
TCGA-05-5715 TCGA-35-3615 TCGA-35-4122 TCGA-35-4123 TCGA-35-5375 TCGA-38-4625 
        2.04         0.46         7.36         5.95         8.68        47.61 
TCGA-38-4626 TCGA-38-4627 TCGA-38-4628 TCGA-38-4629 TCGA-38-4630 TCGA-38-4631 
       85.32        37.71        49.02        28.37        35.28        11.64 
TCGA-38-4632 TCGA-38-6178 TCGA-44-2655 TCGA-44-2656 TCGA-44-2657 TCGA-44-2659 
       44.61         5.19        18.87        19.10        13.15        17.39 
TCGA-44-2661 TCGA-44-2662 TCGA-44-2665 TCGA-44-2666 TCGA-44-2668 TCGA-44-3398 
        3.39        15.78        13.15         3.19         8.09         8.32 
TCGA-44-3918 TCGA-44-3919 TCGA-44-4112 TCGA-44-5643 TCGA-44-5645 TCGA-44-6144 
        6.44         6.21         4.60         3.48         6.84         0.30 
TCGA-44-6145 TCGA-44-6146 TCGA-44-6147 TCGA-44-6148 TCGA-44-6774 TCGA-44-6775 
        3.35         9.93         7.76         3.12         5.42         2.70 
TCGA-44-6776 TCGA-44-6777 TCGA-44-6778 TCGA-44-6779 TCGA-49-4486 TCGA-49-4487 
       63.72        32.45        36.49        16.41        76.21        28.11 
TCGA-49-4488 TCGA-49-4490 TCGA-49-4494 TCGA-49-4501 TCGA-49-4505 TCGA-49-4506 
       28.57        12.66        35.54        46.72        14.07        32.84 
TCGA-49-4507 TCGA-49-4510 TCGA-49-4512 TCGA-49-4514 TCGA-49-6742 TCGA-49-6743 
        8.81        29.46        29.75        43.20        15.02        12.13 
TCGA-49-6744 TCGA-49-6745 TCGA-50-5044 TCGA-50-5045 TCGA-50-5049 TCGA-50-5051 
       12.99         4.93        20.48        71.47        48.82        14.96 
TCGA-50-5055 TCGA-50-5066 TCGA-50-5068 TCGA-50-5072 TCGA-50-5930 TCGA-50-5931 
       25.81         9.76        49.28         8.05         9.27         8.78 
TCGA-50-5932 TCGA-50-5933 TCGA-50-5935 TCGA-50-5936 TCGA-50-5939 TCGA-50-5941 
       35.87        77.88        21.47         8.45        15.12         9.37 
TCGA-50-5942 TCGA-50-5944 TCGA-50-5946 TCGA-50-6590 TCGA-50-6591 TCGA-50-6593 
        4.44        12.26        11.47        42.31         3.88        11.05 
TCGA-50-6594 TCGA-50-6595 TCGA-50-6597 TCGA-55-1592 TCGA-55-1594 TCGA-55-1595 
       12.16         6.21        33.37        23.05        38.73        48.62 
TCGA-55-1596 TCGA-55-5899 TCGA-55-6543 TCGA-55-6642 TCGA-55-6712 TCGA-64-1676 
       45.17         2.86         0.07        32.61         0.79        56.81 
TCGA-64-1677 TCGA-64-1678 TCGA-64-1680 TCGA-64-5774 TCGA-64-5775 TCGA-64-5778 
       20.65        39.09        37.02        83.84         0.10        30.44 
TCGA-64-5779 TCGA-64-5781 TCGA-64-5815 TCGA-67-3770 TCGA-67-3771 TCGA-67-3772 
       16.67        39.52         7.33         0.99         1.97         0.59 
TCGA-67-3773 TCGA-67-3774 TCGA-67-6215 TCGA-67-6216 TCGA-67-6217 TCGA-71-6725 
        2.04         0.59         0.89         0.69        13.87         2.01 
TCGA-73-4659 TCGA-73-4662 TCGA-73-4666 TCGA-73-4668 TCGA-73-4675 TCGA-73-4676 
       23.38        29.95        20.28        15.35         1.32         4.01 
TCGA-73-4677 TCGA-91-6828 TCGA-91-6831 TCGA-91-6835 TCGA-91-6836 
        1.25         1.22         1.28         1.15         0.36 

  ANKRD7 MUTATED ANKRD7 WILD-TYPE 
            0.46             0.07 
  ANKRD7 MUTATED ANKRD7 WILD-TYPE 
           52.57            85.32 
  ANKRD7 MUTATED ANKRD7 WILD-TYPE 
          27.765           13.150 
[1] "0.5 - 52.6 (27.8)" "0.1 - 85.3 (13.2)"
      TCGA-05-4249       TCGA-05-4250       TCGA-05-4382       TCGA-05-4384 
"ANKRD7 WILD-TYPE" "ANKRD7 WILD-TYPE" "ANKRD7 WILD-TYPE" "ANKRD7 WILD-TYPE" 
      TCGA-05-4390       TCGA-05-4396       TCGA-05-4397       TCGA-05-4398 
"ANKRD7 WILD-TYPE" "ANKRD7 WILD-TYPE" "ANKRD7 WILD-TYPE" "ANKRD7 WILD-TYPE" 
      TCGA-05-4402       TCGA-05-4405       TCGA-05-4415       TCGA-05-4417 
"ANKRD7 WILD-TYPE" "ANKRD7 WILD-TYPE" "ANKRD7 WILD-TYPE" "ANKRD7 WILD-TYPE" 
      TCGA-05-4418       TCGA-05-4420       TCGA-05-4424       TCGA-05-4426 
"ANKRD7 WILD-TYPE" "ANKRD7 WILD-TYPE"   "ANKRD7 MUTATED" "ANKRD7 WILD-TYPE" 
      TCGA-05-4427       TCGA-05-4430       TCGA-05-4432       TCGA-05-4433 
"ANKRD7 WILD-TYPE" "ANKRD7 WILD-TYPE" "ANKRD7 WILD-TYPE" "ANKRD7 WILD-TYPE" 
      TCGA-05-4434       TCGA-05-5420       TCGA-05-5423       TCGA-05-5425 
"ANKRD7 WILD-TYPE" "ANKRD7 WILD-TYPE" "ANKRD7 WILD-TYPE" "ANKRD7 WILD-TYPE" 
      TCGA-05-5429       TCGA-05-5715       TCGA-35-3615       TCGA-35-4122 
"ANKRD7 WILD-TYPE" "ANKRD7 WILD-TYPE" "ANKRD7 WILD-TYPE" "ANKRD7 WILD-TYPE" 
      TCGA-35-4123       TCGA-35-5375       TCGA-38-4625       TCGA-38-4626 
"ANKRD7 WILD-TYPE" "ANKRD7 WILD-TYPE" "ANKRD7 WILD-TYPE" "ANKRD7 WILD-TYPE" 
      TCGA-38-4627       TCGA-38-4628       TCGA-38-4629       TCGA-38-4630 
"ANKRD7 WILD-TYPE" "ANKRD7 WILD-TYPE" "ANKRD7 WILD-TYPE" "ANKRD7 WILD-TYPE" 
      TCGA-38-4631       TCGA-38-4632       TCGA-38-6178       TCGA-44-2655 
"ANKRD7 WILD-TYPE" "ANKRD7 WILD-TYPE" "ANKRD7 WILD-TYPE" "ANKRD7 WILD-TYPE" 
      TCGA-44-2656       TCGA-44-2657       TCGA-44-2659       TCGA-44-2661 
"ANKRD7 WILD-TYPE" "ANKRD7 WILD-TYPE" "ANKRD7 WILD-TYPE" "ANKRD7 WILD-TYPE" 
      TCGA-44-2662       TCGA-44-2665       TCGA-44-2666       TCGA-44-2668 
"ANKRD7 WILD-TYPE" "ANKRD7 WILD-TYPE" "ANKRD7 WILD-TYPE" "ANKRD7 WILD-TYPE" 
      TCGA-44-3396       TCGA-44-3398       TCGA-44-3918       TCGA-44-3919 
  "ANKRD7 MUTATED" "ANKRD7 WILD-TYPE" "ANKRD7 WILD-TYPE" "ANKRD7 WILD-TYPE" 
      TCGA-44-4112       TCGA-44-5643       TCGA-44-5645       TCGA-44-6144 
"ANKRD7 WILD-TYPE" "ANKRD7 WILD-TYPE" "ANKRD7 WILD-TYPE" "ANKRD7 WILD-TYPE" 
      TCGA-44-6145       TCGA-44-6146       TCGA-44-6147       TCGA-44-6148 
"ANKRD7 WILD-TYPE" "ANKRD7 WILD-TYPE" "ANKRD7 WILD-TYPE" "ANKRD7 WILD-TYPE" 
      TCGA-44-6774       TCGA-44-6775       TCGA-44-6776       TCGA-44-6777 
"ANKRD7 WILD-TYPE" "ANKRD7 WILD-TYPE" "ANKRD7 WILD-TYPE" "ANKRD7 WILD-TYPE" 
      TCGA-44-6778       TCGA-44-6779       TCGA-49-4486       TCGA-49-4487 
"ANKRD7 WILD-TYPE" "ANKRD7 WILD-TYPE" "ANKRD7 WILD-TYPE" "ANKRD7 WILD-TYPE" 
      TCGA-49-4488       TCGA-49-4490       TCGA-49-4494       TCGA-49-4501 
"ANKRD7 WILD-TYPE" "ANKRD7 WILD-TYPE" "ANKRD7 WILD-TYPE" "ANKRD7 WILD-TYPE" 
      TCGA-49-4505       TCGA-49-4506       TCGA-49-4507       TCGA-49-4510 
"ANKRD7 WILD-TYPE" "ANKRD7 WILD-TYPE" "ANKRD7 WILD-TYPE" "ANKRD7 WILD-TYPE" 
      TCGA-49-4512       TCGA-49-4514       TCGA-49-6742       TCGA-49-6743 
"ANKRD7 WILD-TYPE" "ANKRD7 WILD-TYPE" "ANKRD7 WILD-TYPE" "ANKRD7 WILD-TYPE" 
      TCGA-49-6744       TCGA-49-6745       TCGA-50-5044       TCGA-50-5045 
"ANKRD7 WILD-TYPE" "ANKRD7 WILD-TYPE" "ANKRD7 WILD-TYPE" "ANKRD7 WILD-TYPE" 
      TCGA-50-5049       TCGA-50-5051       TCGA-50-5055       TCGA-50-5066 
"ANKRD7 WILD-TYPE" "ANKRD7 WILD-TYPE" "ANKRD7 WILD-TYPE" "ANKRD7 WILD-TYPE" 
      TCGA-50-5068       TCGA-50-5072       TCGA-50-5930       TCGA-50-5931 
"ANKRD7 WILD-TYPE" "ANKRD7 WILD-TYPE" "ANKRD7 WILD-TYPE" "ANKRD7 WILD-TYPE" 
      TCGA-50-5932       TCGA-50-5933       TCGA-50-5935       TCGA-50-5936 
"ANKRD7 WILD-TYPE" "ANKRD7 WILD-TYPE" "ANKRD7 WILD-TYPE" "ANKRD7 WILD-TYPE" 
      TCGA-50-5939       TCGA-50-5941       TCGA-50-5942       TCGA-50-5944 
"ANKRD7 WILD-TYPE" "ANKRD7 WILD-TYPE" "ANKRD7 WILD-TYPE" "ANKRD7 WILD-TYPE" 
      TCGA-50-5946       TCGA-50-6590       TCGA-50-6591       TCGA-50-6592 
"ANKRD7 WILD-TYPE" "ANKRD7 WILD-TYPE" "ANKRD7 WILD-TYPE"   "ANKRD7 MUTATED" 
      TCGA-50-6593       TCGA-50-6594       TCGA-50-6595       TCGA-50-6597 
"ANKRD7 WILD-TYPE" "ANKRD7 WILD-TYPE" "ANKRD7 WILD-TYPE" "ANKRD7 WILD-TYPE" 
      TCGA-55-1592       TCGA-55-1594       TCGA-55-1595       TCGA-55-1596 
"ANKRD7 WILD-TYPE" "ANKRD7 WILD-TYPE" "ANKRD7 WILD-TYPE" "ANKRD7 WILD-TYPE" 
      TCGA-55-5899       TCGA-55-6543       TCGA-55-6642       TCGA-55-6712 
"ANKRD7 WILD-TYPE" "ANKRD7 WILD-TYPE" "ANKRD7 WILD-TYPE" "ANKRD7 WILD-TYPE" 
      TCGA-64-1676       TCGA-64-1677       TCGA-64-1678       TCGA-64-1680 
"ANKRD7 WILD-TYPE" "ANKRD7 WILD-TYPE" "ANKRD7 WILD-TYPE" "ANKRD7 WILD-TYPE" 
      TCGA-64-5774       TCGA-64-5775       TCGA-64-5778       TCGA-64-5779 
"ANKRD7 WILD-TYPE" "ANKRD7 WILD-TYPE" "ANKRD7 WILD-TYPE" "ANKRD7 WILD-TYPE" 
      TCGA-64-5781       TCGA-64-5815       TCGA-67-3770       TCGA-67-3771 
"ANKRD7 WILD-TYPE" "ANKRD7 WILD-TYPE" "ANKRD7 WILD-TYPE" "ANKRD7 WILD-TYPE" 
      TCGA-67-3772       TCGA-67-3773       TCGA-67-3774       TCGA-67-6215 
"ANKRD7 WILD-TYPE" "ANKRD7 WILD-TYPE" "ANKRD7 WILD-TYPE" "ANKRD7 WILD-TYPE" 
      TCGA-67-6216       TCGA-67-6217       TCGA-71-6725       TCGA-73-4658 
"ANKRD7 WILD-TYPE" "ANKRD7 WILD-TYPE" "ANKRD7 WILD-TYPE"   "ANKRD7 MUTATED" 
      TCGA-73-4659       TCGA-73-4662       TCGA-73-4666       TCGA-73-4668 
"ANKRD7 WILD-TYPE" "ANKRD7 WILD-TYPE" "ANKRD7 WILD-TYPE" "ANKRD7 WILD-TYPE" 
      TCGA-73-4670       TCGA-73-4675       TCGA-73-4676       TCGA-73-4677 
  "ANKRD7 MUTATED" "ANKRD7 WILD-TYPE" "ANKRD7 WILD-TYPE" "ANKRD7 WILD-TYPE" 
      TCGA-91-6828       TCGA-91-6829       TCGA-91-6831       TCGA-91-6835 
"ANKRD7 WILD-TYPE"   "ANKRD7 MUTATED" "ANKRD7 WILD-TYPE" "ANKRD7 WILD-TYPE" 
      TCGA-91-6836 
"ANKRD7 WILD-TYPE" 
      TCGA-05-4249       TCGA-05-4250       TCGA-05-4382       TCGA-05-4384 
"ANKRD7 WILD-TYPE" "ANKRD7 WILD-TYPE" "ANKRD7 WILD-TYPE" "ANKRD7 WILD-TYPE" 
      TCGA-05-4390       TCGA-05-4396       TCGA-05-4397       TCGA-05-4398 
"ANKRD7 WILD-TYPE" "ANKRD7 WILD-TYPE" "ANKRD7 WILD-TYPE" "ANKRD7 WILD-TYPE" 
      TCGA-05-4402       TCGA-05-4405       TCGA-05-4415       TCGA-05-4417 
"ANKRD7 WILD-TYPE" "ANKRD7 WILD-TYPE" "ANKRD7 WILD-TYPE" "ANKRD7 WILD-TYPE" 
      TCGA-05-4418       TCGA-05-4420       TCGA-05-4424       TCGA-05-4426 
"ANKRD7 WILD-TYPE" "ANKRD7 WILD-TYPE"   "ANKRD7 MUTATED" "ANKRD7 WILD-TYPE" 
      TCGA-05-4427       TCGA-05-4430       TCGA-05-4432       TCGA-05-4433 
"ANKRD7 WILD-TYPE" "ANKRD7 WILD-TYPE" "ANKRD7 WILD-TYPE" "ANKRD7 WILD-TYPE" 
      TCGA-05-4434       TCGA-05-5420       TCGA-05-5423       TCGA-05-5425 
"ANKRD7 WILD-TYPE" "ANKRD7 WILD-TYPE" "ANKRD7 WILD-TYPE" "ANKRD7 WILD-TYPE" 
      TCGA-05-5429       TCGA-05-5715       TCGA-35-3615       TCGA-35-4122 
"ANKRD7 WILD-TYPE" "ANKRD7 WILD-TYPE" "ANKRD7 WILD-TYPE" "ANKRD7 WILD-TYPE" 
      TCGA-35-4123       TCGA-35-5375       TCGA-38-4625       TCGA-38-4626 
"ANKRD7 WILD-TYPE" "ANKRD7 WILD-TYPE" "ANKRD7 WILD-TYPE" "ANKRD7 WILD-TYPE" 
      TCGA-38-4627       TCGA-38-4628       TCGA-38-4629       TCGA-38-4630 
"ANKRD7 WILD-TYPE" "ANKRD7 WILD-TYPE" "ANKRD7 WILD-TYPE" "ANKRD7 WILD-TYPE" 
      TCGA-38-4631       TCGA-38-4632       TCGA-38-6178       TCGA-44-2655 
"ANKRD7 WILD-TYPE" "ANKRD7 WILD-TYPE" "ANKRD7 WILD-TYPE" "ANKRD7 WILD-TYPE" 
      TCGA-44-2656       TCGA-44-2657       TCGA-44-2659       TCGA-44-2661 
"ANKRD7 WILD-TYPE" "ANKRD7 WILD-TYPE" "ANKRD7 WILD-TYPE" "ANKRD7 WILD-TYPE" 
      TCGA-44-2662       TCGA-44-2665       TCGA-44-2666       TCGA-44-2668 
"ANKRD7 WILD-TYPE" "ANKRD7 WILD-TYPE" "ANKRD7 WILD-TYPE" "ANKRD7 WILD-TYPE" 
      TCGA-44-3396       TCGA-44-3398       TCGA-44-3918       TCGA-44-3919 
  "ANKRD7 MUTATED" "ANKRD7 WILD-TYPE" "ANKRD7 WILD-TYPE" "ANKRD7 WILD-TYPE" 
      TCGA-44-4112       TCGA-44-5643       TCGA-44-5645       TCGA-44-6144 
"ANKRD7 WILD-TYPE" "ANKRD7 WILD-TYPE" "ANKRD7 WILD-TYPE" "ANKRD7 WILD-TYPE" 
      TCGA-44-6145       TCGA-44-6146       TCGA-44-6147       TCGA-44-6148 
"ANKRD7 WILD-TYPE" "ANKRD7 WILD-TYPE" "ANKRD7 WILD-TYPE" "ANKRD7 WILD-TYPE" 
      TCGA-44-6774       TCGA-44-6775       TCGA-44-6776       TCGA-44-6777 
"ANKRD7 WILD-TYPE" "ANKRD7 WILD-TYPE" "ANKRD7 WILD-TYPE" "ANKRD7 WILD-TYPE" 
      TCGA-44-6778       TCGA-44-6779       TCGA-49-4486       TCGA-49-4487 
"ANKRD7 WILD-TYPE" "ANKRD7 WILD-TYPE" "ANKRD7 WILD-TYPE" "ANKRD7 WILD-TYPE" 
      TCGA-49-4488       TCGA-49-4490       TCGA-49-4494       TCGA-49-4501 
"ANKRD7 WILD-TYPE" "ANKRD7 WILD-TYPE" "ANKRD7 WILD-TYPE" "ANKRD7 WILD-TYPE" 
      TCGA-49-4505       TCGA-49-4506       TCGA-49-4507       TCGA-49-4510 
"ANKRD7 WILD-TYPE" "ANKRD7 WILD-TYPE" "ANKRD7 WILD-TYPE" "ANKRD7 WILD-TYPE" 
      TCGA-49-4512       TCGA-49-4514       TCGA-49-6742       TCGA-49-6743 
"ANKRD7 WILD-TYPE" "ANKRD7 WILD-TYPE" "ANKRD7 WILD-TYPE" "ANKRD7 WILD-TYPE" 
      TCGA-49-6744       TCGA-49-6745       TCGA-50-5044       TCGA-50-5045 
"ANKRD7 WILD-TYPE" "ANKRD7 WILD-TYPE" "ANKRD7 WILD-TYPE" "ANKRD7 WILD-TYPE" 
      TCGA-50-5049       TCGA-50-5051       TCGA-50-5055       TCGA-50-5066 
"ANKRD7 WILD-TYPE" "ANKRD7 WILD-TYPE" "ANKRD7 WILD-TYPE" "ANKRD7 WILD-TYPE" 
      TCGA-50-5068       TCGA-50-5072       TCGA-50-5930       TCGA-50-5931 
"ANKRD7 WILD-TYPE" "ANKRD7 WILD-TYPE" "ANKRD7 WILD-TYPE" "ANKRD7 WILD-TYPE" 
      TCGA-50-5932       TCGA-50-5933       TCGA-50-5935       TCGA-50-5936 
"ANKRD7 WILD-TYPE" "ANKRD7 WILD-TYPE" "ANKRD7 WILD-TYPE" "ANKRD7 WILD-TYPE" 
      TCGA-50-5939       TCGA-50-5941       TCGA-50-5942       TCGA-50-5944 
"ANKRD7 WILD-TYPE" "ANKRD7 WILD-TYPE" "ANKRD7 WILD-TYPE" "ANKRD7 WILD-TYPE" 
      TCGA-50-5946       TCGA-50-6590       TCGA-50-6591       TCGA-50-6592 
"ANKRD7 WILD-TYPE" "ANKRD7 WILD-TYPE" "ANKRD7 WILD-TYPE"   "ANKRD7 MUTATED" 
      TCGA-50-6593       TCGA-50-6594       TCGA-50-6595       TCGA-50-6597 
"ANKRD7 WILD-TYPE" "ANKRD7 WILD-TYPE" "ANKRD7 WILD-TYPE" "ANKRD7 WILD-TYPE" 
      TCGA-55-1592       TCGA-55-1594       TCGA-55-1595       TCGA-55-1596 
"ANKRD7 WILD-TYPE" "ANKRD7 WILD-TYPE" "ANKRD7 WILD-TYPE" "ANKRD7 WILD-TYPE" 
      TCGA-55-5899       TCGA-55-6543       TCGA-55-6642       TCGA-55-6712 
"ANKRD7 WILD-TYPE" "ANKRD7 WILD-TYPE" "ANKRD7 WILD-TYPE" "ANKRD7 WILD-TYPE" 
      TCGA-64-1676       TCGA-64-1677       TCGA-64-1678       TCGA-64-1680 
"ANKRD7 WILD-TYPE" "ANKRD7 WILD-TYPE" "ANKRD7 WILD-TYPE" "ANKRD7 WILD-TYPE" 
      TCGA-64-5774       TCGA-64-5775       TCGA-64-5778       TCGA-64-5779 
"ANKRD7 WILD-TYPE" "ANKRD7 WILD-TYPE" "ANKRD7 WILD-TYPE" "ANKRD7 WILD-TYPE" 
      TCGA-64-5781       TCGA-64-5815       TCGA-67-3770       TCGA-67-3771 
"ANKRD7 WILD-TYPE" "ANKRD7 WILD-TYPE" "ANKRD7 WILD-TYPE" "ANKRD7 WILD-TYPE" 
      TCGA-67-3772       TCGA-67-3773       TCGA-67-3774       TCGA-67-6215 
"ANKRD7 WILD-TYPE" "ANKRD7 WILD-TYPE" "ANKRD7 WILD-TYPE" "ANKRD7 WILD-TYPE" 
      TCGA-67-6216       TCGA-67-6217       TCGA-71-6725       TCGA-73-4658 
"ANKRD7 WILD-TYPE" "ANKRD7 WILD-TYPE" "ANKRD7 WILD-TYPE"   "ANKRD7 MUTATED" 
      TCGA-73-4659       TCGA-73-4662       TCGA-73-4666       TCGA-73-4668 
"ANKRD7 WILD-TYPE" "ANKRD7 WILD-TYPE" "ANKRD7 WILD-TYPE" "ANKRD7 WILD-TYPE" 
      TCGA-73-4670       TCGA-73-4675       TCGA-73-4676       TCGA-73-4677 
  "ANKRD7 MUTATED" "ANKRD7 WILD-TYPE" "ANKRD7 WILD-TYPE" "ANKRD7 WILD-TYPE" 
      TCGA-91-6828       TCGA-91-6829       TCGA-91-6831       TCGA-91-6835 
"ANKRD7 WILD-TYPE"   "ANKRD7 MUTATED" "ANKRD7 WILD-TYPE" "ANKRD7 WILD-TYPE" 
      TCGA-91-6836 
"ANKRD7 WILD-TYPE" 
      TCGA-05-4249       TCGA-05-4250       TCGA-05-4382       TCGA-05-4384 
"ANKRD7 WILD-TYPE" "ANKRD7 WILD-TYPE" "ANKRD7 WILD-TYPE" "ANKRD7 WILD-TYPE" 
      TCGA-05-4390       TCGA-05-4396       TCGA-05-4397       TCGA-05-4398 
"ANKRD7 WILD-TYPE" "ANKRD7 WILD-TYPE" "ANKRD7 WILD-TYPE" "ANKRD7 WILD-TYPE" 
      TCGA-05-4402       TCGA-05-4405       TCGA-05-4415       TCGA-05-4417 
"ANKRD7 WILD-TYPE" "ANKRD7 WILD-TYPE" "ANKRD7 WILD-TYPE" "ANKRD7 WILD-TYPE" 
      TCGA-05-4418       TCGA-05-4420       TCGA-05-4424       TCGA-05-4426 
"ANKRD7 WILD-TYPE" "ANKRD7 WILD-TYPE"   "ANKRD7 MUTATED" "ANKRD7 WILD-TYPE" 
      TCGA-05-4427       TCGA-05-4430       TCGA-05-4432       TCGA-05-4433 
"ANKRD7 WILD-TYPE" "ANKRD7 WILD-TYPE" "ANKRD7 WILD-TYPE" "ANKRD7 WILD-TYPE" 
      TCGA-05-4434       TCGA-05-5420       TCGA-05-5423       TCGA-05-5425 
"ANKRD7 WILD-TYPE" "ANKRD7 WILD-TYPE" "ANKRD7 WILD-TYPE" "ANKRD7 WILD-TYPE" 
      TCGA-05-5429       TCGA-05-5715       TCGA-35-3615       TCGA-35-4122 
"ANKRD7 WILD-TYPE" "ANKRD7 WILD-TYPE" "ANKRD7 WILD-TYPE" "ANKRD7 WILD-TYPE" 
      TCGA-35-4123       TCGA-35-5375       TCGA-38-4625       TCGA-38-4626 
"ANKRD7 WILD-TYPE" "ANKRD7 WILD-TYPE" "ANKRD7 WILD-TYPE" "ANKRD7 WILD-TYPE" 
      TCGA-38-4627       TCGA-38-4628       TCGA-38-4629       TCGA-38-4630 
"ANKRD7 WILD-TYPE" "ANKRD7 WILD-TYPE" "ANKRD7 WILD-TYPE" "ANKRD7 WILD-TYPE" 
      TCGA-38-4631       TCGA-38-4632       TCGA-38-6178       TCGA-44-2655 
"ANKRD7 WILD-TYPE" "ANKRD7 WILD-TYPE" "ANKRD7 WILD-TYPE" "ANKRD7 WILD-TYPE" 
      TCGA-44-2656       TCGA-44-2657       TCGA-44-2659       TCGA-44-2661 
"ANKRD7 WILD-TYPE" "ANKRD7 WILD-TYPE" "ANKRD7 WILD-TYPE" "ANKRD7 WILD-TYPE" 
      TCGA-44-2662       TCGA-44-2665       TCGA-44-2666       TCGA-44-2668 
"ANKRD7 WILD-TYPE" "ANKRD7 WILD-TYPE" "ANKRD7 WILD-TYPE" "ANKRD7 WILD-TYPE" 
      TCGA-44-3396       TCGA-44-3398       TCGA-44-3918       TCGA-44-3919 
  "ANKRD7 MUTATED" "ANKRD7 WILD-TYPE" "ANKRD7 WILD-TYPE" "ANKRD7 WILD-TYPE" 
      TCGA-44-4112       TCGA-44-5643       TCGA-44-5645       TCGA-44-6144 
"ANKRD7 WILD-TYPE" "ANKRD7 WILD-TYPE" "ANKRD7 WILD-TYPE" "ANKRD7 WILD-TYPE" 
      TCGA-44-6145       TCGA-44-6146       TCGA-44-6147       TCGA-44-6148 
"ANKRD7 WILD-TYPE" "ANKRD7 WILD-TYPE" "ANKRD7 WILD-TYPE" "ANKRD7 WILD-TYPE" 
      TCGA-44-6774       TCGA-44-6775       TCGA-44-6776       TCGA-44-6777 
"ANKRD7 WILD-TYPE" "ANKRD7 WILD-TYPE" "ANKRD7 WILD-TYPE" "ANKRD7 WILD-TYPE" 
      TCGA-44-6778       TCGA-44-6779       TCGA-49-4486       TCGA-49-4487 
"ANKRD7 WILD-TYPE" "ANKRD7 WILD-TYPE" "ANKRD7 WILD-TYPE" "ANKRD7 WILD-TYPE" 
      TCGA-49-4488       TCGA-49-4490       TCGA-49-4494       TCGA-49-4501 
"ANKRD7 WILD-TYPE" "ANKRD7 WILD-TYPE" "ANKRD7 WILD-TYPE" "ANKRD7 WILD-TYPE" 
      TCGA-49-4505       TCGA-49-4506       TCGA-49-4507       TCGA-49-4510 
"ANKRD7 WILD-TYPE" "ANKRD7 WILD-TYPE" "ANKRD7 WILD-TYPE" "ANKRD7 WILD-TYPE" 
      TCGA-49-4512       TCGA-49-4514       TCGA-49-6742       TCGA-49-6743 
"ANKRD7 WILD-TYPE" "ANKRD7 WILD-TYPE" "ANKRD7 WILD-TYPE" "ANKRD7 WILD-TYPE" 
      TCGA-49-6744       TCGA-49-6745       TCGA-50-5044       TCGA-50-5045 
"ANKRD7 WILD-TYPE" "ANKRD7 WILD-TYPE" "ANKRD7 WILD-TYPE" "ANKRD7 WILD-TYPE" 
      TCGA-50-5049       TCGA-50-5051       TCGA-50-5055       TCGA-50-5066 
"ANKRD7 WILD-TYPE" "ANKRD7 WILD-TYPE" "ANKRD7 WILD-TYPE" "ANKRD7 WILD-TYPE" 
      TCGA-50-5068       TCGA-50-5072       TCGA-50-5930       TCGA-50-5931 
"ANKRD7 WILD-TYPE" "ANKRD7 WILD-TYPE" "ANKRD7 WILD-TYPE" "ANKRD7 WILD-TYPE" 
      TCGA-50-5932       TCGA-50-5933       TCGA-50-5935       TCGA-50-5936 
"ANKRD7 WILD-TYPE" "ANKRD7 WILD-TYPE" "ANKRD7 WILD-TYPE" "ANKRD7 WILD-TYPE" 
      TCGA-50-5939       TCGA-50-5941       TCGA-50-5942       TCGA-50-5944 
"ANKRD7 WILD-TYPE" "ANKRD7 WILD-TYPE" "ANKRD7 WILD-TYPE" "ANKRD7 WILD-TYPE" 
      TCGA-50-5946       TCGA-50-6590       TCGA-50-6591       TCGA-50-6592 
"ANKRD7 WILD-TYPE" "ANKRD7 WILD-TYPE" "ANKRD7 WILD-TYPE"   "ANKRD7 MUTATED" 
      TCGA-50-6593       TCGA-50-6594       TCGA-50-6595       TCGA-50-6597 
"ANKRD7 WILD-TYPE" "ANKRD7 WILD-TYPE" "ANKRD7 WILD-TYPE" "ANKRD7 WILD-TYPE" 
      TCGA-55-1592       TCGA-55-1594       TCGA-55-1595       TCGA-55-1596 
"ANKRD7 WILD-TYPE" "ANKRD7 WILD-TYPE" "ANKRD7 WILD-TYPE" "ANKRD7 WILD-TYPE" 
      TCGA-55-5899       TCGA-55-6543       TCGA-55-6642       TCGA-55-6712 
"ANKRD7 WILD-TYPE" "ANKRD7 WILD-TYPE" "ANKRD7 WILD-TYPE" "ANKRD7 WILD-TYPE" 
      TCGA-64-1676       TCGA-64-1677       TCGA-64-1678       TCGA-64-1680 
"ANKRD7 WILD-TYPE" "ANKRD7 WILD-TYPE" "ANKRD7 WILD-TYPE" "ANKRD7 WILD-TYPE" 
      TCGA-64-5774       TCGA-64-5775       TCGA-64-5778       TCGA-64-5779 
"ANKRD7 WILD-TYPE" "ANKRD7 WILD-TYPE" "ANKRD7 WILD-TYPE" "ANKRD7 WILD-TYPE" 
      TCGA-64-5781       TCGA-64-5815       TCGA-67-3770       TCGA-67-3771 
"ANKRD7 WILD-TYPE" "ANKRD7 WILD-TYPE" "ANKRD7 WILD-TYPE" "ANKRD7 WILD-TYPE" 
      TCGA-67-3772       TCGA-67-3773       TCGA-67-3774       TCGA-67-6215 
"ANKRD7 WILD-TYPE" "ANKRD7 WILD-TYPE" "ANKRD7 WILD-TYPE" "ANKRD7 WILD-TYPE" 
      TCGA-67-6216       TCGA-67-6217       TCGA-71-6725       TCGA-73-4658 
"ANKRD7 WILD-TYPE" "ANKRD7 WILD-TYPE" "ANKRD7 WILD-TYPE"   "ANKRD7 MUTATED" 
      TCGA-73-4659       TCGA-73-4662       TCGA-73-4666       TCGA-73-4668 
"ANKRD7 WILD-TYPE" "ANKRD7 WILD-TYPE" "ANKRD7 WILD-TYPE" "ANKRD7 WILD-TYPE" 
      TCGA-73-4670       TCGA-73-4675       TCGA-73-4676       TCGA-73-4677 
  "ANKRD7 MUTATED" "ANKRD7 WILD-TYPE" "ANKRD7 WILD-TYPE" "ANKRD7 WILD-TYPE" 
      TCGA-91-6828       TCGA-91-6829       TCGA-91-6831       TCGA-91-6835 
"ANKRD7 WILD-TYPE"   "ANKRD7 MUTATED" "ANKRD7 WILD-TYPE" "ANKRD7 WILD-TYPE" 
      TCGA-91-6836 
"ANKRD7 WILD-TYPE" 
[1] "hr=" "1"  
D164V2, continuous
D164V3, binary
[1] "tbl2"
                  cls
clus               [,1] [,2]
  ANKRD7 MUTATED      4    2
  ANKRD7 WILD-TYPE   89   77
        clus
vv       ANKRD7 MUTATED ANKRD7 WILD-TYPE
  FEMALE              4               89
  MALE                2               77
D164V4, continuous
D164V5, multiclass
D164V6, multiclass
    clus
vv   ANKRD7 MUTATED ANKRD7 WILD-TYPE
  T1              0               41
  T2              5              103
  T3              1               13
  T4              0                8
D164V7, multiclass
       clus
vv      ANKRD7 MUTATED ANKRD7 WILD-TYPE
  N0                 5               90
  N1                 0               37
  N2+N3              1               34
D164V8, multiclass
    clus
vv   ANKRD7 MUTATED ANKRD7 WILD-TYPE
  M0              4              133
  M1              1                8
  MX              1               21
D164V9, multiclass
     clus
vv    ANKRD7 MUTATED ANKRD7 WILD-TYPE
  I                3               85
  II               1               32
  III              1               38
  IV               1                8
D164V10, binary
[1] "tbl2"
                  cls
clus               [,1] [,2]
  ANKRD7 MUTATED      0    6
  ANKRD7 WILD-TYPE   16  150
     clus
vv    ANKRD7 MUTATED ANKRD7 WILD-TYPE
  NO               0               16
  YES              6              150
D164V11, continuous
D164V12, continuous
D164V13, multiclass
                                             clus
vv                                            ANKRD7 MUTATED ANKRD7 WILD-TYPE
  CURRENT REFORMED SMOKER FOR < OR = 15 YEARS              4               58
  CURRENT REFORMED SMOKER FOR > 15 YEARS                   1               45
  CURRENT SMOKER                                           1               27
  LIFELONG NON-SMOKER                                      0               24
D164V14, continuous

Clustering(165) Variable = CDH12 MUTATION ANALYSIS
D165V1, survival
                 sevent
clus2              0  1
  CDH12 MUTATED   12  3
  CDH12 WILD-TYPE 87 47
  CDH12 MUTATED CDH12 WILD-TYPE 
             15             134 
  CDH12 MUTATED CDH12 WILD-TYPE 
              3              47 
$`CDH12 MUTATED`
TCGA-05-4382 TCGA-05-4396 TCGA-05-4424 TCGA-44-2656 TCGA-44-6777 TCGA-44-6778 
       19.92         9.96        30.02        19.10        32.45        36.49 
TCGA-49-4507 TCGA-50-5049 TCGA-50-5066 TCGA-67-3770 TCGA-67-3771 TCGA-67-6217 
        8.81        48.82         9.76         0.99         1.97        13.87 
TCGA-73-4670 TCGA-91-6828 TCGA-91-6831 
        0.46         1.22         1.28 

$`CDH12 WILD-TYPE`
TCGA-05-4249 TCGA-05-4250 TCGA-05-4384 TCGA-05-4390 TCGA-05-4397 TCGA-05-4398 
       38.07         3.98        14.01        37.02        24.03        47.05 
TCGA-05-4402 TCGA-05-4405 TCGA-05-4415 TCGA-05-4417 TCGA-05-4418 TCGA-05-4420 
        8.02        20.05         2.96        14.93         8.98        29.95 
TCGA-05-4426 TCGA-05-4427 TCGA-05-4430 TCGA-05-4432 TCGA-05-4433 TCGA-05-4434 
       26.01        26.01        25.02        25.02        24.00        15.02 
TCGA-05-5420 TCGA-05-5423 TCGA-05-5425 TCGA-05-5429 TCGA-05-5715 TCGA-35-3615 
        1.02         4.96         2.96         0.99         2.04         0.46 
TCGA-35-4122 TCGA-35-4123 TCGA-35-5375 TCGA-38-4625 TCGA-38-4626 TCGA-38-4627 
        7.36         5.95         8.68        47.61        85.32        37.71 
TCGA-38-4628 TCGA-38-4629 TCGA-38-4630 TCGA-38-4631 TCGA-38-4632 TCGA-38-6178 
       49.02        28.37        35.28        11.64        44.61         5.19 
TCGA-44-2655 TCGA-44-2657 TCGA-44-2659 TCGA-44-2661 TCGA-44-2662 TCGA-44-2665 
       18.87        13.15        17.39         3.39        15.78        13.15 
TCGA-44-2666 TCGA-44-2668 TCGA-44-3396 TCGA-44-3398 TCGA-44-3918 TCGA-44-3919 
        3.19         8.09        10.22         8.32         6.44         6.21 
TCGA-44-4112 TCGA-44-5643 TCGA-44-5645 TCGA-44-6144 TCGA-44-6145 TCGA-44-6146 
        4.60         3.48         6.84         0.30         3.35         9.93 
TCGA-44-6147 TCGA-44-6148 TCGA-44-6774 TCGA-44-6775 TCGA-44-6776 TCGA-44-6779 
        7.76         3.12         5.42         2.70        63.72        16.41 
TCGA-49-4486 TCGA-49-4487 TCGA-49-4488 TCGA-49-4490 TCGA-49-4494 TCGA-49-4501 
       76.21        28.11        28.57        12.66        35.54        46.72 
TCGA-49-4505 TCGA-49-4506 TCGA-49-4510 TCGA-49-4512 TCGA-49-4514 TCGA-49-6742 
       14.07        32.84        29.46        29.75        43.20        15.02 
TCGA-49-6743 TCGA-49-6744 TCGA-49-6745 TCGA-50-5044 TCGA-50-5045 TCGA-50-5051 
       12.13        12.99         4.93        20.48        71.47        14.96 
TCGA-50-5055 TCGA-50-5068 TCGA-50-5072 TCGA-50-5930 TCGA-50-5931 TCGA-50-5932 
       25.81        49.28         8.05         9.27         8.78        35.87 
TCGA-50-5933 TCGA-50-5935 TCGA-50-5936 TCGA-50-5939 TCGA-50-5941 TCGA-50-5942 
       77.88        21.47         8.45        15.12         9.37         4.44 
TCGA-50-5944 TCGA-50-5946 TCGA-50-6590 TCGA-50-6591 TCGA-50-6592 TCGA-50-6593 
       12.26        11.47        42.31         3.88        25.51        11.05 
TCGA-50-6594 TCGA-50-6595 TCGA-50-6597 TCGA-55-1592 TCGA-55-1594 TCGA-55-1595 
       12.16         6.21        33.37        23.05        38.73        48.62 
TCGA-55-1596 TCGA-55-5899 TCGA-55-6543 TCGA-55-6642 TCGA-55-6712 TCGA-64-1676 
       45.17         2.86         0.07        32.61         0.79        56.81 
TCGA-64-1677 TCGA-64-1678 TCGA-64-1680 TCGA-64-5774 TCGA-64-5775 TCGA-64-5778 
       20.65        39.09        37.02        83.84         0.10        30.44 
TCGA-64-5779 TCGA-64-5781 TCGA-64-5815 TCGA-67-3772 TCGA-67-3773 TCGA-67-3774 
       16.67        39.52         7.33         0.59         2.04         0.59 
TCGA-67-6215 TCGA-67-6216 TCGA-71-6725 TCGA-73-4658 TCGA-73-4659 TCGA-73-4662 
        0.89         0.69         2.01        52.57        23.38        29.95 
TCGA-73-4666 TCGA-73-4668 TCGA-73-4675 TCGA-73-4676 TCGA-73-4677 TCGA-91-6829 
       20.28        15.35         1.32         4.01         1.25        41.33 
TCGA-91-6835 TCGA-91-6836 
        1.15         0.36 

  CDH12 MUTATED CDH12 WILD-TYPE 
           0.46            0.07 
  CDH12 MUTATED CDH12 WILD-TYPE 
          48.82           85.32 
  CDH12 MUTATED CDH12 WILD-TYPE 
           9.96           14.04 
[1] "0.5 - 48.8 (10.0)" "0.1 - 85.3 (14.0)"
     TCGA-05-4249      TCGA-05-4250      TCGA-05-4382      TCGA-05-4384 
"CDH12 WILD-TYPE" "CDH12 WILD-TYPE"   "CDH12 MUTATED" "CDH12 WILD-TYPE" 
     TCGA-05-4390      TCGA-05-4396      TCGA-05-4397      TCGA-05-4398 
"CDH12 WILD-TYPE"   "CDH12 MUTATED" "CDH12 WILD-TYPE" "CDH12 WILD-TYPE" 
     TCGA-05-4402      TCGA-05-4405      TCGA-05-4415      TCGA-05-4417 
"CDH12 WILD-TYPE" "CDH12 WILD-TYPE" "CDH12 WILD-TYPE" "CDH12 WILD-TYPE" 
     TCGA-05-4418      TCGA-05-4420      TCGA-05-4424      TCGA-05-4426 
"CDH12 WILD-TYPE" "CDH12 WILD-TYPE"   "CDH12 MUTATED" "CDH12 WILD-TYPE" 
     TCGA-05-4427      TCGA-05-4430      TCGA-05-4432      TCGA-05-4433 
"CDH12 WILD-TYPE" "CDH12 WILD-TYPE" "CDH12 WILD-TYPE" "CDH12 WILD-TYPE" 
     TCGA-05-4434      TCGA-05-5420      TCGA-05-5423      TCGA-05-5425 
"CDH12 WILD-TYPE" "CDH12 WILD-TYPE" "CDH12 WILD-TYPE" "CDH12 WILD-TYPE" 
     TCGA-05-5429      TCGA-05-5715      TCGA-35-3615      TCGA-35-4122 
"CDH12 WILD-TYPE" "CDH12 WILD-TYPE" "CDH12 WILD-TYPE" "CDH12 WILD-TYPE" 
     TCGA-35-4123      TCGA-35-5375      TCGA-38-4625      TCGA-38-4626 
"CDH12 WILD-TYPE" "CDH12 WILD-TYPE" "CDH12 WILD-TYPE" "CDH12 WILD-TYPE" 
     TCGA-38-4627      TCGA-38-4628      TCGA-38-4629      TCGA-38-4630 
"CDH12 WILD-TYPE" "CDH12 WILD-TYPE" "CDH12 WILD-TYPE" "CDH12 WILD-TYPE" 
     TCGA-38-4631      TCGA-38-4632      TCGA-38-6178      TCGA-44-2655 
"CDH12 WILD-TYPE" "CDH12 WILD-TYPE" "CDH12 WILD-TYPE" "CDH12 WILD-TYPE" 
     TCGA-44-2656      TCGA-44-2657      TCGA-44-2659      TCGA-44-2661 
  "CDH12 MUTATED" "CDH12 WILD-TYPE" "CDH12 WILD-TYPE" "CDH12 WILD-TYPE" 
     TCGA-44-2662      TCGA-44-2665      TCGA-44-2666      TCGA-44-2668 
"CDH12 WILD-TYPE" "CDH12 WILD-TYPE" "CDH12 WILD-TYPE" "CDH12 WILD-TYPE" 
     TCGA-44-3396      TCGA-44-3398      TCGA-44-3918      TCGA-44-3919 
"CDH12 WILD-TYPE" "CDH12 WILD-TYPE" "CDH12 WILD-TYPE" "CDH12 WILD-TYPE" 
     TCGA-44-4112      TCGA-44-5643      TCGA-44-5645      TCGA-44-6144 
"CDH12 WILD-TYPE" "CDH12 WILD-TYPE" "CDH12 WILD-TYPE" "CDH12 WILD-TYPE" 
     TCGA-44-6145      TCGA-44-6146      TCGA-44-6147      TCGA-44-6148 
"CDH12 WILD-TYPE" "CDH12 WILD-TYPE" "CDH12 WILD-TYPE" "CDH12 WILD-TYPE" 
     TCGA-44-6774      TCGA-44-6775      TCGA-44-6776      TCGA-44-6777 
"CDH12 WILD-TYPE" "CDH12 WILD-TYPE" "CDH12 WILD-TYPE"   "CDH12 MUTATED" 
     TCGA-44-6778      TCGA-44-6779      TCGA-49-4486      TCGA-49-4487 
  "CDH12 MUTATED" "CDH12 WILD-TYPE" "CDH12 WILD-TYPE" "CDH12 WILD-TYPE" 
     TCGA-49-4488      TCGA-49-4490      TCGA-49-4494      TCGA-49-4501 
"CDH12 WILD-TYPE" "CDH12 WILD-TYPE" "CDH12 WILD-TYPE" "CDH12 WILD-TYPE" 
     TCGA-49-4505      TCGA-49-4506      TCGA-49-4507      TCGA-49-4510 
"CDH12 WILD-TYPE" "CDH12 WILD-TYPE"   "CDH12 MUTATED" "CDH12 WILD-TYPE" 
     TCGA-49-4512      TCGA-49-4514      TCGA-49-6742      TCGA-49-6743 
"CDH12 WILD-TYPE" "CDH12 WILD-TYPE" "CDH12 WILD-TYPE" "CDH12 WILD-TYPE" 
     TCGA-49-6744      TCGA-49-6745      TCGA-50-5044      TCGA-50-5045 
"CDH12 WILD-TYPE" "CDH12 WILD-TYPE" "CDH12 WILD-TYPE" "CDH12 WILD-TYPE" 
     TCGA-50-5049      TCGA-50-5051      TCGA-50-5055      TCGA-50-5066 
  "CDH12 MUTATED" "CDH12 WILD-TYPE" "CDH12 WILD-TYPE"   "CDH12 MUTATED" 
     TCGA-50-5068      TCGA-50-5072      TCGA-50-5930      TCGA-50-5931 
"CDH12 WILD-TYPE" "CDH12 WILD-TYPE" "CDH12 WILD-TYPE" "CDH12 WILD-TYPE" 
     TCGA-50-5932      TCGA-50-5933      TCGA-50-5935      TCGA-50-5936 
"CDH12 WILD-TYPE" "CDH12 WILD-TYPE" "CDH12 WILD-TYPE" "CDH12 WILD-TYPE" 
     TCGA-50-5939      TCGA-50-5941      TCGA-50-5942      TCGA-50-5944 
"CDH12 WILD-TYPE" "CDH12 WILD-TYPE" "CDH12 WILD-TYPE" "CDH12 WILD-TYPE" 
     TCGA-50-5946      TCGA-50-6590      TCGA-50-6591      TCGA-50-6592 
"CDH12 WILD-TYPE" "CDH12 WILD-TYPE" "CDH12 WILD-TYPE" "CDH12 WILD-TYPE" 
     TCGA-50-6593      TCGA-50-6594      TCGA-50-6595      TCGA-50-6597 
"CDH12 WILD-TYPE" "CDH12 WILD-TYPE" "CDH12 WILD-TYPE" "CDH12 WILD-TYPE" 
     TCGA-55-1592      TCGA-55-1594      TCGA-55-1595      TCGA-55-1596 
"CDH12 WILD-TYPE" "CDH12 WILD-TYPE" "CDH12 WILD-TYPE" "CDH12 WILD-TYPE" 
     TCGA-55-5899      TCGA-55-6543      TCGA-55-6642      TCGA-55-6712 
"CDH12 WILD-TYPE" "CDH12 WILD-TYPE" "CDH12 WILD-TYPE" "CDH12 WILD-TYPE" 
     TCGA-64-1676      TCGA-64-1677      TCGA-64-1678      TCGA-64-1680 
"CDH12 WILD-TYPE" "CDH12 WILD-TYPE" "CDH12 WILD-TYPE" "CDH12 WILD-TYPE" 
     TCGA-64-5774      TCGA-64-5775      TCGA-64-5778      TCGA-64-5779 
"CDH12 WILD-TYPE" "CDH12 WILD-TYPE" "CDH12 WILD-TYPE" "CDH12 WILD-TYPE" 
     TCGA-64-5781      TCGA-64-5815      TCGA-67-3770      TCGA-67-3771 
"CDH12 WILD-TYPE" "CDH12 WILD-TYPE"   "CDH12 MUTATED"   "CDH12 MUTATED" 
     TCGA-67-3772      TCGA-67-3773      TCGA-67-3774      TCGA-67-6215 
"CDH12 WILD-TYPE" "CDH12 WILD-TYPE" "CDH12 WILD-TYPE" "CDH12 WILD-TYPE" 
     TCGA-67-6216      TCGA-67-6217      TCGA-71-6725      TCGA-73-4658 
"CDH12 WILD-TYPE"   "CDH12 MUTATED" "CDH12 WILD-TYPE" "CDH12 WILD-TYPE" 
     TCGA-73-4659      TCGA-73-4662      TCGA-73-4666      TCGA-73-4668 
"CDH12 WILD-TYPE" "CDH12 WILD-TYPE" "CDH12 WILD-TYPE" "CDH12 WILD-TYPE" 
     TCGA-73-4670      TCGA-73-4675      TCGA-73-4676      TCGA-73-4677 
  "CDH12 MUTATED" "CDH12 WILD-TYPE" "CDH12 WILD-TYPE" "CDH12 WILD-TYPE" 
     TCGA-91-6828      TCGA-91-6829      TCGA-91-6831      TCGA-91-6835 
  "CDH12 MUTATED" "CDH12 WILD-TYPE"   "CDH12 MUTATED" "CDH12 WILD-TYPE" 
     TCGA-91-6836 
"CDH12 WILD-TYPE" 
     TCGA-05-4249      TCGA-05-4250      TCGA-05-4382      TCGA-05-4384 
"CDH12 WILD-TYPE" "CDH12 WILD-TYPE"   "CDH12 MUTATED" "CDH12 WILD-TYPE" 
     TCGA-05-4390      TCGA-05-4396      TCGA-05-4397      TCGA-05-4398 
"CDH12 WILD-TYPE"   "CDH12 MUTATED" "CDH12 WILD-TYPE" "CDH12 WILD-TYPE" 
     TCGA-05-4402      TCGA-05-4405      TCGA-05-4415      TCGA-05-4417 
"CDH12 WILD-TYPE" "CDH12 WILD-TYPE" "CDH12 WILD-TYPE" "CDH12 WILD-TYPE" 
     TCGA-05-4418      TCGA-05-4420      TCGA-05-4424      TCGA-05-4426 
"CDH12 WILD-TYPE" "CDH12 WILD-TYPE"   "CDH12 MUTATED" "CDH12 WILD-TYPE" 
     TCGA-05-4427      TCGA-05-4430      TCGA-05-4432      TCGA-05-4433 
"CDH12 WILD-TYPE" "CDH12 WILD-TYPE" "CDH12 WILD-TYPE" "CDH12 WILD-TYPE" 
     TCGA-05-4434      TCGA-05-5420      TCGA-05-5423      TCGA-05-5425 
"CDH12 WILD-TYPE" "CDH12 WILD-TYPE" "CDH12 WILD-TYPE" "CDH12 WILD-TYPE" 
     TCGA-05-5429      TCGA-05-5715      TCGA-35-3615      TCGA-35-4122 
"CDH12 WILD-TYPE" "CDH12 WILD-TYPE" "CDH12 WILD-TYPE" "CDH12 WILD-TYPE" 
     TCGA-35-4123      TCGA-35-5375      TCGA-38-4625      TCGA-38-4626 
"CDH12 WILD-TYPE" "CDH12 WILD-TYPE" "CDH12 WILD-TYPE" "CDH12 WILD-TYPE" 
     TCGA-38-4627      TCGA-38-4628      TCGA-38-4629      TCGA-38-4630 
"CDH12 WILD-TYPE" "CDH12 WILD-TYPE" "CDH12 WILD-TYPE" "CDH12 WILD-TYPE" 
     TCGA-38-4631      TCGA-38-4632      TCGA-38-6178      TCGA-44-2655 
"CDH12 WILD-TYPE" "CDH12 WILD-TYPE" "CDH12 WILD-TYPE" "CDH12 WILD-TYPE" 
     TCGA-44-2656      TCGA-44-2657      TCGA-44-2659      TCGA-44-2661 
  "CDH12 MUTATED" "CDH12 WILD-TYPE" "CDH12 WILD-TYPE" "CDH12 WILD-TYPE" 
     TCGA-44-2662      TCGA-44-2665      TCGA-44-2666      TCGA-44-2668 
"CDH12 WILD-TYPE" "CDH12 WILD-TYPE" "CDH12 WILD-TYPE" "CDH12 WILD-TYPE" 
     TCGA-44-3396      TCGA-44-3398      TCGA-44-3918      TCGA-44-3919 
"CDH12 WILD-TYPE" "CDH12 WILD-TYPE" "CDH12 WILD-TYPE" "CDH12 WILD-TYPE" 
     TCGA-44-4112      TCGA-44-5643      TCGA-44-5645      TCGA-44-6144 
"CDH12 WILD-TYPE" "CDH12 WILD-TYPE" "CDH12 WILD-TYPE" "CDH12 WILD-TYPE" 
     TCGA-44-6145      TCGA-44-6146      TCGA-44-6147      TCGA-44-6148 
"CDH12 WILD-TYPE" "CDH12 WILD-TYPE" "CDH12 WILD-TYPE" "CDH12 WILD-TYPE" 
     TCGA-44-6774      TCGA-44-6775      TCGA-44-6776      TCGA-44-6777 
"CDH12 WILD-TYPE" "CDH12 WILD-TYPE" "CDH12 WILD-TYPE"   "CDH12 MUTATED" 
     TCGA-44-6778      TCGA-44-6779      TCGA-49-4486      TCGA-49-4487 
  "CDH12 MUTATED" "CDH12 WILD-TYPE" "CDH12 WILD-TYPE" "CDH12 WILD-TYPE" 
     TCGA-49-4488      TCGA-49-4490      TCGA-49-4494      TCGA-49-4501 
"CDH12 WILD-TYPE" "CDH12 WILD-TYPE" "CDH12 WILD-TYPE" "CDH12 WILD-TYPE" 
     TCGA-49-4505      TCGA-49-4506      TCGA-49-4507      TCGA-49-4510 
"CDH12 WILD-TYPE" "CDH12 WILD-TYPE"   "CDH12 MUTATED" "CDH12 WILD-TYPE" 
     TCGA-49-4512      TCGA-49-4514      TCGA-49-6742      TCGA-49-6743 
"CDH12 WILD-TYPE" "CDH12 WILD-TYPE" "CDH12 WILD-TYPE" "CDH12 WILD-TYPE" 
     TCGA-49-6744      TCGA-49-6745      TCGA-50-5044      TCGA-50-5045 
"CDH12 WILD-TYPE" "CDH12 WILD-TYPE" "CDH12 WILD-TYPE" "CDH12 WILD-TYPE" 
     TCGA-50-5049      TCGA-50-5051      TCGA-50-5055      TCGA-50-5066 
  "CDH12 MUTATED" "CDH12 WILD-TYPE" "CDH12 WILD-TYPE"   "CDH12 MUTATED" 
     TCGA-50-5068      TCGA-50-5072      TCGA-50-5930      TCGA-50-5931 
"CDH12 WILD-TYPE" "CDH12 WILD-TYPE" "CDH12 WILD-TYPE" "CDH12 WILD-TYPE" 
     TCGA-50-5932      TCGA-50-5933      TCGA-50-5935      TCGA-50-5936 
"CDH12 WILD-TYPE" "CDH12 WILD-TYPE" "CDH12 WILD-TYPE" "CDH12 WILD-TYPE" 
     TCGA-50-5939      TCGA-50-5941      TCGA-50-5942      TCGA-50-5944 
"CDH12 WILD-TYPE" "CDH12 WILD-TYPE" "CDH12 WILD-TYPE" "CDH12 WILD-TYPE" 
     TCGA-50-5946      TCGA-50-6590      TCGA-50-6591      TCGA-50-6592 
"CDH12 WILD-TYPE" "CDH12 WILD-TYPE" "CDH12 WILD-TYPE" "CDH12 WILD-TYPE" 
     TCGA-50-6593      TCGA-50-6594      TCGA-50-6595      TCGA-50-6597 
"CDH12 WILD-TYPE" "CDH12 WILD-TYPE" "CDH12 WILD-TYPE" "CDH12 WILD-TYPE" 
     TCGA-55-1592      TCGA-55-1594      TCGA-55-1595      TCGA-55-1596 
"CDH12 WILD-TYPE" "CDH12 WILD-TYPE" "CDH12 WILD-TYPE" "CDH12 WILD-TYPE" 
     TCGA-55-5899      TCGA-55-6543      TCGA-55-6642      TCGA-55-6712 
"CDH12 WILD-TYPE" "CDH12 WILD-TYPE" "CDH12 WILD-TYPE" "CDH12 WILD-TYPE" 
     TCGA-64-1676      TCGA-64-1677      TCGA-64-1678      TCGA-64-1680 
"CDH12 WILD-TYPE" "CDH12 WILD-TYPE" "CDH12 WILD-TYPE" "CDH12 WILD-TYPE" 
     TCGA-64-5774      TCGA-64-5775      TCGA-64-5778      TCGA-64-5779 
"CDH12 WILD-TYPE" "CDH12 WILD-TYPE" "CDH12 WILD-TYPE" "CDH12 WILD-TYPE" 
     TCGA-64-5781      TCGA-64-5815      TCGA-67-3770      TCGA-67-3771 
"CDH12 WILD-TYPE" "CDH12 WILD-TYPE"   "CDH12 MUTATED"   "CDH12 MUTATED" 
     TCGA-67-3772      TCGA-67-3773      TCGA-67-3774      TCGA-67-6215 
"CDH12 WILD-TYPE" "CDH12 WILD-TYPE" "CDH12 WILD-TYPE" "CDH12 WILD-TYPE" 
     TCGA-67-6216      TCGA-67-6217      TCGA-71-6725      TCGA-73-4658 
"CDH12 WILD-TYPE"   "CDH12 MUTATED" "CDH12 WILD-TYPE" "CDH12 WILD-TYPE" 
     TCGA-73-4659      TCGA-73-4662      TCGA-73-4666      TCGA-73-4668 
"CDH12 WILD-TYPE" "CDH12 WILD-TYPE" "CDH12 WILD-TYPE" "CDH12 WILD-TYPE" 
     TCGA-73-4670      TCGA-73-4675      TCGA-73-4676      TCGA-73-4677 
  "CDH12 MUTATED" "CDH12 WILD-TYPE" "CDH12 WILD-TYPE" "CDH12 WILD-TYPE" 
     TCGA-91-6828      TCGA-91-6829      TCGA-91-6831      TCGA-91-6835 
  "CDH12 MUTATED" "CDH12 WILD-TYPE"   "CDH12 MUTATED" "CDH12 WILD-TYPE" 
     TCGA-91-6836 
"CDH12 WILD-TYPE" 
     TCGA-05-4249      TCGA-05-4250      TCGA-05-4382      TCGA-05-4384 
"CDH12 WILD-TYPE" "CDH12 WILD-TYPE"   "CDH12 MUTATED" "CDH12 WILD-TYPE" 
     TCGA-05-4390      TCGA-05-4396      TCGA-05-4397      TCGA-05-4398 
"CDH12 WILD-TYPE"   "CDH12 MUTATED" "CDH12 WILD-TYPE" "CDH12 WILD-TYPE" 
     TCGA-05-4402      TCGA-05-4405      TCGA-05-4415      TCGA-05-4417 
"CDH12 WILD-TYPE" "CDH12 WILD-TYPE" "CDH12 WILD-TYPE" "CDH12 WILD-TYPE" 
     TCGA-05-4418      TCGA-05-4420      TCGA-05-4424      TCGA-05-4426 
"CDH12 WILD-TYPE" "CDH12 WILD-TYPE"   "CDH12 MUTATED" "CDH12 WILD-TYPE" 
     TCGA-05-4427      TCGA-05-4430      TCGA-05-4432      TCGA-05-4433 
"CDH12 WILD-TYPE" "CDH12 WILD-TYPE" "CDH12 WILD-TYPE" "CDH12 WILD-TYPE" 
     TCGA-05-4434      TCGA-05-5420      TCGA-05-5423      TCGA-05-5425 
"CDH12 WILD-TYPE" "CDH12 WILD-TYPE" "CDH12 WILD-TYPE" "CDH12 WILD-TYPE" 
     TCGA-05-5429      TCGA-05-5715      TCGA-35-3615      TCGA-35-4122 
"CDH12 WILD-TYPE" "CDH12 WILD-TYPE" "CDH12 WILD-TYPE" "CDH12 WILD-TYPE" 
     TCGA-35-4123      TCGA-35-5375      TCGA-38-4625      TCGA-38-4626 
"CDH12 WILD-TYPE" "CDH12 WILD-TYPE" "CDH12 WILD-TYPE" "CDH12 WILD-TYPE" 
     TCGA-38-4627      TCGA-38-4628      TCGA-38-4629      TCGA-38-4630 
"CDH12 WILD-TYPE" "CDH12 WILD-TYPE" "CDH12 WILD-TYPE" "CDH12 WILD-TYPE" 
     TCGA-38-4631      TCGA-38-4632      TCGA-38-6178      TCGA-44-2655 
"CDH12 WILD-TYPE" "CDH12 WILD-TYPE" "CDH12 WILD-TYPE" "CDH12 WILD-TYPE" 
     TCGA-44-2656      TCGA-44-2657      TCGA-44-2659      TCGA-44-2661 
  "CDH12 MUTATED" "CDH12 WILD-TYPE" "CDH12 WILD-TYPE" "CDH12 WILD-TYPE" 
     TCGA-44-2662      TCGA-44-2665      TCGA-44-2666      TCGA-44-2668 
"CDH12 WILD-TYPE" "CDH12 WILD-TYPE" "CDH12 WILD-TYPE" "CDH12 WILD-TYPE" 
     TCGA-44-3396      TCGA-44-3398      TCGA-44-3918      TCGA-44-3919 
"CDH12 WILD-TYPE" "CDH12 WILD-TYPE" "CDH12 WILD-TYPE" "CDH12 WILD-TYPE" 
     TCGA-44-4112      TCGA-44-5643      TCGA-44-5645      TCGA-44-6144 
"CDH12 WILD-TYPE" "CDH12 WILD-TYPE" "CDH12 WILD-TYPE" "CDH12 WILD-TYPE" 
     TCGA-44-6145      TCGA-44-6146      TCGA-44-6147      TCGA-44-6148 
"CDH12 WILD-TYPE" "CDH12 WILD-TYPE" "CDH12 WILD-TYPE" "CDH12 WILD-TYPE" 
     TCGA-44-6774      TCGA-44-6775      TCGA-44-6776      TCGA-44-6777 
"CDH12 WILD-TYPE" "CDH12 WILD-TYPE" "CDH12 WILD-TYPE"   "CDH12 MUTATED" 
     TCGA-44-6778      TCGA-44-6779      TCGA-49-4486      TCGA-49-4487 
  "CDH12 MUTATED" "CDH12 WILD-TYPE" "CDH12 WILD-TYPE" "CDH12 WILD-TYPE" 
     TCGA-49-4488      TCGA-49-4490      TCGA-49-4494      TCGA-49-4501 
"CDH12 WILD-TYPE" "CDH12 WILD-TYPE" "CDH12 WILD-TYPE" "CDH12 WILD-TYPE" 
     TCGA-49-4505      TCGA-49-4506      TCGA-49-4507      TCGA-49-4510 
"CDH12 WILD-TYPE" "CDH12 WILD-TYPE"   "CDH12 MUTATED" "CDH12 WILD-TYPE" 
     TCGA-49-4512      TCGA-49-4514      TCGA-49-6742      TCGA-49-6743 
"CDH12 WILD-TYPE" "CDH12 WILD-TYPE" "CDH12 WILD-TYPE" "CDH12 WILD-TYPE" 
     TCGA-49-6744      TCGA-49-6745      TCGA-50-5044      TCGA-50-5045 
"CDH12 WILD-TYPE" "CDH12 WILD-TYPE" "CDH12 WILD-TYPE" "CDH12 WILD-TYPE" 
     TCGA-50-5049      TCGA-50-5051      TCGA-50-5055      TCGA-50-5066 
  "CDH12 MUTATED" "CDH12 WILD-TYPE" "CDH12 WILD-TYPE"   "CDH12 MUTATED" 
     TCGA-50-5068      TCGA-50-5072      TCGA-50-5930      TCGA-50-5931 
"CDH12 WILD-TYPE" "CDH12 WILD-TYPE" "CDH12 WILD-TYPE" "CDH12 WILD-TYPE" 
     TCGA-50-5932      TCGA-50-5933      TCGA-50-5935      TCGA-50-5936 
"CDH12 WILD-TYPE" "CDH12 WILD-TYPE" "CDH12 WILD-TYPE" "CDH12 WILD-TYPE" 
     TCGA-50-5939      TCGA-50-5941      TCGA-50-5942      TCGA-50-5944 
"CDH12 WILD-TYPE" "CDH12 WILD-TYPE" "CDH12 WILD-TYPE" "CDH12 WILD-TYPE" 
     TCGA-50-5946      TCGA-50-6590      TCGA-50-6591      TCGA-50-6592 
"CDH12 WILD-TYPE" "CDH12 WILD-TYPE" "CDH12 WILD-TYPE" "CDH12 WILD-TYPE" 
     TCGA-50-6593      TCGA-50-6594      TCGA-50-6595      TCGA-50-6597 
"CDH12 WILD-TYPE" "CDH12 WILD-TYPE" "CDH12 WILD-TYPE" "CDH12 WILD-TYPE" 
     TCGA-55-1592      TCGA-55-1594      TCGA-55-1595      TCGA-55-1596 
"CDH12 WILD-TYPE" "CDH12 WILD-TYPE" "CDH12 WILD-TYPE" "CDH12 WILD-TYPE" 
     TCGA-55-5899      TCGA-55-6543      TCGA-55-6642      TCGA-55-6712 
"CDH12 WILD-TYPE" "CDH12 WILD-TYPE" "CDH12 WILD-TYPE" "CDH12 WILD-TYPE" 
     TCGA-64-1676      TCGA-64-1677      TCGA-64-1678      TCGA-64-1680 
"CDH12 WILD-TYPE" "CDH12 WILD-TYPE" "CDH12 WILD-TYPE" "CDH12 WILD-TYPE" 
     TCGA-64-5774      TCGA-64-5775      TCGA-64-5778      TCGA-64-5779 
"CDH12 WILD-TYPE" "CDH12 WILD-TYPE" "CDH12 WILD-TYPE" "CDH12 WILD-TYPE" 
     TCGA-64-5781      TCGA-64-5815      TCGA-67-3770      TCGA-67-3771 
"CDH12 WILD-TYPE" "CDH12 WILD-TYPE"   "CDH12 MUTATED"   "CDH12 MUTATED" 
     TCGA-67-3772      TCGA-67-3773      TCGA-67-3774      TCGA-67-6215 
"CDH12 WILD-TYPE" "CDH12 WILD-TYPE" "CDH12 WILD-TYPE" "CDH12 WILD-TYPE" 
     TCGA-67-6216      TCGA-67-6217      TCGA-71-6725      TCGA-73-4658 
"CDH12 WILD-TYPE"   "CDH12 MUTATED" "CDH12 WILD-TYPE" "CDH12 WILD-TYPE" 
     TCGA-73-4659      TCGA-73-4662      TCGA-73-4666      TCGA-73-4668 
"CDH12 WILD-TYPE" "CDH12 WILD-TYPE" "CDH12 WILD-TYPE" "CDH12 WILD-TYPE" 
     TCGA-73-4670      TCGA-73-4675      TCGA-73-4676      TCGA-73-4677 
  "CDH12 MUTATED" "CDH12 WILD-TYPE" "CDH12 WILD-TYPE" "CDH12 WILD-TYPE" 
     TCGA-91-6828      TCGA-91-6829      TCGA-91-6831      TCGA-91-6835 
  "CDH12 MUTATED" "CDH12 WILD-TYPE"   "CDH12 MUTATED" "CDH12 WILD-TYPE" 
     TCGA-91-6836 
"CDH12 WILD-TYPE" 
[1] "hr=" "1.2"
D165V2, continuous
D165V3, binary
[1] "tbl2"
                 cls
clus              [,1] [,2]
  CDH12 MUTATED      7   10
  CDH12 WILD-TYPE   86   69
        clus
vv       CDH12 MUTATED CDH12 WILD-TYPE
  FEMALE             7              86
  MALE              10              69
D165V4, continuous
D165V5, multiclass
D165V6, multiclass
    clus
vv   CDH12 MUTATED CDH12 WILD-TYPE
  T1             4              37
  T2             9              99
  T3             3              11
  T4             1               7
D165V7, multiclass
       clus
vv      CDH12 MUTATED CDH12 WILD-TYPE
  N0               13              82
  N1                3              34
  N2+N3             0              35
D165V8, multiclass
    clus
vv   CDH12 MUTATED CDH12 WILD-TYPE
  M0            11             126
  M1             1               8
  MX             5              17
D165V9, multiclass
     clus
vv    CDH12 MUTATED CDH12 WILD-TYPE
  I              11              77
  II              3              30
  III             2              37
  IV              1               8
D165V10, binary
[1] "tbl2"
                 cls
clus              [,1] [,2]
  CDH12 MUTATED      3   14
  CDH12 WILD-TYPE   13  142
     clus
vv    CDH12 MUTATED CDH12 WILD-TYPE
  NO              3              13
  YES            14             142
D165V11, continuous
D165V12, continuous
D165V13, multiclass
                                             clus
vv                                            CDH12 MUTATED CDH12 WILD-TYPE
  CURRENT REFORMED SMOKER FOR < OR = 15 YEARS             9              53
  CURRENT REFORMED SMOKER FOR > 15 YEARS                  4              42
  CURRENT SMOKER                                          2              26
  LIFELONG NON-SMOKER                                     1              23
D165V14, continuous

Clustering(166) Variable = GPR65 MUTATION ANALYSIS
D166V1, survival
                 sevent
clus2              0  1
  GPR65 MUTATED    1  1
  GPR65 WILD-TYPE 98 49
  GPR65 MUTATED GPR65 WILD-TYPE 
              2             147 
  GPR65 MUTATED GPR65 WILD-TYPE 
              1              49 
$`GPR65 MUTATED`
TCGA-50-6590 TCGA-67-3771 
       42.31         1.97 

$`GPR65 WILD-TYPE`
TCGA-05-4249 TCGA-05-4250 TCGA-05-4382 TCGA-05-4384 TCGA-05-4390 TCGA-05-4396 
       38.07         3.98        19.92        14.01        37.02         9.96 
TCGA-05-4397 TCGA-05-4398 TCGA-05-4402 TCGA-05-4405 TCGA-05-4415 TCGA-05-4417 
       24.03        47.05         8.02        20.05         2.96        14.93 
TCGA-05-4418 TCGA-05-4420 TCGA-05-4424 TCGA-05-4426 TCGA-05-4427 TCGA-05-4430 
        8.98        29.95        30.02        26.01        26.01        25.02 
TCGA-05-4432 TCGA-05-4433 TCGA-05-4434 TCGA-05-5420 TCGA-05-5423 TCGA-05-5425 
       25.02        24.00        15.02         1.02         4.96         2.96 
TCGA-05-5429 TCGA-05-5715 TCGA-35-3615 TCGA-35-4122 TCGA-35-4123 TCGA-35-5375 
        0.99         2.04         0.46         7.36         5.95         8.68 
TCGA-38-4625 TCGA-38-4626 TCGA-38-4627 TCGA-38-4628 TCGA-38-4629 TCGA-38-4630 
       47.61        85.32        37.71        49.02        28.37        35.28 
TCGA-38-4631 TCGA-38-4632 TCGA-38-6178 TCGA-44-2655 TCGA-44-2656 TCGA-44-2657 
       11.64        44.61         5.19        18.87        19.10        13.15 
TCGA-44-2659 TCGA-44-2661 TCGA-44-2662 TCGA-44-2665 TCGA-44-2666 TCGA-44-2668 
       17.39         3.39        15.78        13.15         3.19         8.09 
TCGA-44-3396 TCGA-44-3398 TCGA-44-3918 TCGA-44-3919 TCGA-44-4112 TCGA-44-5643 
       10.22         8.32         6.44         6.21         4.60         3.48 
TCGA-44-5645 TCGA-44-6144 TCGA-44-6145 TCGA-44-6146 TCGA-44-6147 TCGA-44-6148 
        6.84         0.30         3.35         9.93         7.76         3.12 
TCGA-44-6774 TCGA-44-6775 TCGA-44-6776 TCGA-44-6777 TCGA-44-6778 TCGA-44-6779 
        5.42         2.70        63.72        32.45        36.49        16.41 
TCGA-49-4486 TCGA-49-4487 TCGA-49-4488 TCGA-49-4490 TCGA-49-4494 TCGA-49-4501 
       76.21        28.11        28.57        12.66        35.54        46.72 
TCGA-49-4505 TCGA-49-4506 TCGA-49-4507 TCGA-49-4510 TCGA-49-4512 TCGA-49-4514 
       14.07        32.84         8.81        29.46        29.75        43.20 
TCGA-49-6742 TCGA-49-6743 TCGA-49-6744 TCGA-49-6745 TCGA-50-5044 TCGA-50-5045 
       15.02        12.13        12.99         4.93        20.48        71.47 
TCGA-50-5049 TCGA-50-5051 TCGA-50-5055 TCGA-50-5066 TCGA-50-5068 TCGA-50-5072 
       48.82        14.96        25.81         9.76        49.28         8.05 
TCGA-50-5930 TCGA-50-5931 TCGA-50-5932 TCGA-50-5933 TCGA-50-5935 TCGA-50-5936 
        9.27         8.78        35.87        77.88        21.47         8.45 
TCGA-50-5939 TCGA-50-5941 TCGA-50-5942 TCGA-50-5944 TCGA-50-5946 TCGA-50-6591 
       15.12         9.37         4.44        12.26        11.47         3.88 
TCGA-50-6592 TCGA-50-6593 TCGA-50-6594 TCGA-50-6595 TCGA-50-6597 TCGA-55-1592 
       25.51        11.05        12.16         6.21        33.37        23.05 
TCGA-55-1594 TCGA-55-1595 TCGA-55-1596 TCGA-55-5899 TCGA-55-6543 TCGA-55-6642 
       38.73        48.62        45.17         2.86         0.07        32.61 
TCGA-55-6712 TCGA-64-1676 TCGA-64-1677 TCGA-64-1678 TCGA-64-1680 TCGA-64-5774 
        0.79        56.81        20.65        39.09        37.02        83.84 
TCGA-64-5775 TCGA-64-5778 TCGA-64-5779 TCGA-64-5781 TCGA-64-5815 TCGA-67-3770 
        0.10        30.44        16.67        39.52         7.33         0.99 
TCGA-67-3772 TCGA-67-3773 TCGA-67-3774 TCGA-67-6215 TCGA-67-6216 TCGA-67-6217 
        0.59         2.04         0.59         0.89         0.69        13.87 
TCGA-71-6725 TCGA-73-4658 TCGA-73-4659 TCGA-73-4662 TCGA-73-4666 TCGA-73-4668 
        2.01        52.57        23.38        29.95        20.28        15.35 
TCGA-73-4670 TCGA-73-4675 TCGA-73-4676 TCGA-73-4677 TCGA-91-6828 TCGA-91-6829 
        0.46         1.32         4.01         1.25         1.22        41.33 
TCGA-91-6831 TCGA-91-6835 TCGA-91-6836 
        1.28         1.15         0.36 

  GPR65 MUTATED GPR65 WILD-TYPE 
           1.97            0.07 
  GPR65 MUTATED GPR65 WILD-TYPE 
          42.31           85.32 
  GPR65 MUTATED GPR65 WILD-TYPE 
          22.14           13.87 
[1] "2.0 - 42.3 (22.1)" "0.1 - 85.3 (13.9)"
     TCGA-05-4249      TCGA-05-4250      TCGA-05-4382      TCGA-05-4384 
"GPR65 WILD-TYPE" "GPR65 WILD-TYPE" "GPR65 WILD-TYPE" "GPR65 WILD-TYPE" 
     TCGA-05-4390      TCGA-05-4396      TCGA-05-4397      TCGA-05-4398 
"GPR65 WILD-TYPE" "GPR65 WILD-TYPE" "GPR65 WILD-TYPE" "GPR65 WILD-TYPE" 
     TCGA-05-4402      TCGA-05-4405      TCGA-05-4415      TCGA-05-4417 
"GPR65 WILD-TYPE" "GPR65 WILD-TYPE" "GPR65 WILD-TYPE" "GPR65 WILD-TYPE" 
     TCGA-05-4418      TCGA-05-4420      TCGA-05-4424      TCGA-05-4426 
"GPR65 WILD-TYPE" "GPR65 WILD-TYPE" "GPR65 WILD-TYPE" "GPR65 WILD-TYPE" 
     TCGA-05-4427      TCGA-05-4430      TCGA-05-4432      TCGA-05-4433 
"GPR65 WILD-TYPE" "GPR65 WILD-TYPE" "GPR65 WILD-TYPE" "GPR65 WILD-TYPE" 
     TCGA-05-4434      TCGA-05-5420      TCGA-05-5423      TCGA-05-5425 
"GPR65 WILD-TYPE" "GPR65 WILD-TYPE" "GPR65 WILD-TYPE" "GPR65 WILD-TYPE" 
     TCGA-05-5429      TCGA-05-5715      TCGA-35-3615      TCGA-35-4122 
"GPR65 WILD-TYPE" "GPR65 WILD-TYPE" "GPR65 WILD-TYPE" "GPR65 WILD-TYPE" 
     TCGA-35-4123      TCGA-35-5375      TCGA-38-4625      TCGA-38-4626 
"GPR65 WILD-TYPE" "GPR65 WILD-TYPE" "GPR65 WILD-TYPE" "GPR65 WILD-TYPE" 
     TCGA-38-4627      TCGA-38-4628      TCGA-38-4629      TCGA-38-4630 
"GPR65 WILD-TYPE" "GPR65 WILD-TYPE" "GPR65 WILD-TYPE" "GPR65 WILD-TYPE" 
     TCGA-38-4631      TCGA-38-4632      TCGA-38-6178      TCGA-44-2655 
"GPR65 WILD-TYPE" "GPR65 WILD-TYPE" "GPR65 WILD-TYPE" "GPR65 WILD-TYPE" 
     TCGA-44-2656      TCGA-44-2657      TCGA-44-2659      TCGA-44-2661 
"GPR65 WILD-TYPE" "GPR65 WILD-TYPE" "GPR65 WILD-TYPE" "GPR65 WILD-TYPE" 
     TCGA-44-2662      TCGA-44-2665      TCGA-44-2666      TCGA-44-2668 
"GPR65 WILD-TYPE" "GPR65 WILD-TYPE" "GPR65 WILD-TYPE" "GPR65 WILD-TYPE" 
     TCGA-44-3396      TCGA-44-3398      TCGA-44-3918      TCGA-44-3919 
"GPR65 WILD-TYPE" "GPR65 WILD-TYPE" "GPR65 WILD-TYPE" "GPR65 WILD-TYPE" 
     TCGA-44-4112      TCGA-44-5643      TCGA-44-5645      TCGA-44-6144 
"GPR65 WILD-TYPE" "GPR65 WILD-TYPE" "GPR65 WILD-TYPE" "GPR65 WILD-TYPE" 
     TCGA-44-6145      TCGA-44-6146      TCGA-44-6147      TCGA-44-6148 
"GPR65 WILD-TYPE" "GPR65 WILD-TYPE" "GPR65 WILD-TYPE" "GPR65 WILD-TYPE" 
     TCGA-44-6774      TCGA-44-6775      TCGA-44-6776      TCGA-44-6777 
"GPR65 WILD-TYPE" "GPR65 WILD-TYPE" "GPR65 WILD-TYPE" "GPR65 WILD-TYPE" 
     TCGA-44-6778      TCGA-44-6779      TCGA-49-4486      TCGA-49-4487 
"GPR65 WILD-TYPE" "GPR65 WILD-TYPE" "GPR65 WILD-TYPE" "GPR65 WILD-TYPE" 
     TCGA-49-4488      TCGA-49-4490      TCGA-49-4494      TCGA-49-4501 
"GPR65 WILD-TYPE" "GPR65 WILD-TYPE" "GPR65 WILD-TYPE" "GPR65 WILD-TYPE" 
     TCGA-49-4505      TCGA-49-4506      TCGA-49-4507      TCGA-49-4510 
"GPR65 WILD-TYPE" "GPR65 WILD-TYPE" "GPR65 WILD-TYPE" "GPR65 WILD-TYPE" 
     TCGA-49-4512      TCGA-49-4514      TCGA-49-6742      TCGA-49-6743 
"GPR65 WILD-TYPE" "GPR65 WILD-TYPE" "GPR65 WILD-TYPE" "GPR65 WILD-TYPE" 
     TCGA-49-6744      TCGA-49-6745      TCGA-50-5044      TCGA-50-5045 
"GPR65 WILD-TYPE" "GPR65 WILD-TYPE" "GPR65 WILD-TYPE" "GPR65 WILD-TYPE" 
     TCGA-50-5049      TCGA-50-5051      TCGA-50-5055      TCGA-50-5066 
"GPR65 WILD-TYPE" "GPR65 WILD-TYPE" "GPR65 WILD-TYPE" "GPR65 WILD-TYPE" 
     TCGA-50-5068      TCGA-50-5072      TCGA-50-5930      TCGA-50-5931 
"GPR65 WILD-TYPE" "GPR65 WILD-TYPE" "GPR65 WILD-TYPE" "GPR65 WILD-TYPE" 
     TCGA-50-5932      TCGA-50-5933      TCGA-50-5935      TCGA-50-5936 
"GPR65 WILD-TYPE" "GPR65 WILD-TYPE" "GPR65 WILD-TYPE" "GPR65 WILD-TYPE" 
     TCGA-50-5939      TCGA-50-5941      TCGA-50-5942      TCGA-50-5944 
"GPR65 WILD-TYPE" "GPR65 WILD-TYPE" "GPR65 WILD-TYPE" "GPR65 WILD-TYPE" 
     TCGA-50-5946      TCGA-50-6590      TCGA-50-6591      TCGA-50-6592 
"GPR65 WILD-TYPE"   "GPR65 MUTATED" "GPR65 WILD-TYPE" "GPR65 WILD-TYPE" 
     TCGA-50-6593      TCGA-50-6594      TCGA-50-6595      TCGA-50-6597 
"GPR65 WILD-TYPE" "GPR65 WILD-TYPE" "GPR65 WILD-TYPE" "GPR65 WILD-TYPE" 
     TCGA-55-1592      TCGA-55-1594      TCGA-55-1595      TCGA-55-1596 
"GPR65 WILD-TYPE" "GPR65 WILD-TYPE" "GPR65 WILD-TYPE" "GPR65 WILD-TYPE" 
     TCGA-55-5899      TCGA-55-6543      TCGA-55-6642      TCGA-55-6712 
"GPR65 WILD-TYPE" "GPR65 WILD-TYPE" "GPR65 WILD-TYPE" "GPR65 WILD-TYPE" 
     TCGA-64-1676      TCGA-64-1677      TCGA-64-1678      TCGA-64-1680 
"GPR65 WILD-TYPE" "GPR65 WILD-TYPE" "GPR65 WILD-TYPE" "GPR65 WILD-TYPE" 
     TCGA-64-5774      TCGA-64-5775      TCGA-64-5778      TCGA-64-5779 
"GPR65 WILD-TYPE" "GPR65 WILD-TYPE" "GPR65 WILD-TYPE" "GPR65 WILD-TYPE" 
     TCGA-64-5781      TCGA-64-5815      TCGA-67-3770      TCGA-67-3771 
"GPR65 WILD-TYPE" "GPR65 WILD-TYPE" "GPR65 WILD-TYPE"   "GPR65 MUTATED" 
     TCGA-67-3772      TCGA-67-3773      TCGA-67-3774      TCGA-67-6215 
"GPR65 WILD-TYPE" "GPR65 WILD-TYPE" "GPR65 WILD-TYPE" "GPR65 WILD-TYPE" 
     TCGA-67-6216      TCGA-67-6217      TCGA-71-6725      TCGA-73-4658 
"GPR65 WILD-TYPE" "GPR65 WILD-TYPE" "GPR65 WILD-TYPE" "GPR65 WILD-TYPE" 
     TCGA-73-4659      TCGA-73-4662      TCGA-73-4666      TCGA-73-4668 
"GPR65 WILD-TYPE" "GPR65 WILD-TYPE" "GPR65 WILD-TYPE" "GPR65 WILD-TYPE" 
     TCGA-73-4670      TCGA-73-4675      TCGA-73-4676      TCGA-73-4677 
"GPR65 WILD-TYPE" "GPR65 WILD-TYPE" "GPR65 WILD-TYPE" "GPR65 WILD-TYPE" 
     TCGA-91-6828      TCGA-91-6829      TCGA-91-6831      TCGA-91-6835 
"GPR65 WILD-TYPE" "GPR65 WILD-TYPE" "GPR65 WILD-TYPE" "GPR65 WILD-TYPE" 
     TCGA-91-6836 
"GPR65 WILD-TYPE" 
     TCGA-05-4249      TCGA-05-4250      TCGA-05-4382      TCGA-05-4384 
"GPR65 WILD-TYPE" "GPR65 WILD-TYPE" "GPR65 WILD-TYPE" "GPR65 WILD-TYPE" 
     TCGA-05-4390      TCGA-05-4396      TCGA-05-4397      TCGA-05-4398 
"GPR65 WILD-TYPE" "GPR65 WILD-TYPE" "GPR65 WILD-TYPE" "GPR65 WILD-TYPE" 
     TCGA-05-4402      TCGA-05-4405      TCGA-05-4415      TCGA-05-4417 
"GPR65 WILD-TYPE" "GPR65 WILD-TYPE" "GPR65 WILD-TYPE" "GPR65 WILD-TYPE" 
     TCGA-05-4418      TCGA-05-4420      TCGA-05-4424      TCGA-05-4426 
"GPR65 WILD-TYPE" "GPR65 WILD-TYPE" "GPR65 WILD-TYPE" "GPR65 WILD-TYPE" 
     TCGA-05-4427      TCGA-05-4430      TCGA-05-4432      TCGA-05-4433 
"GPR65 WILD-TYPE" "GPR65 WILD-TYPE" "GPR65 WILD-TYPE" "GPR65 WILD-TYPE" 
     TCGA-05-4434      TCGA-05-5420      TCGA-05-5423      TCGA-05-5425 
"GPR65 WILD-TYPE" "GPR65 WILD-TYPE" "GPR65 WILD-TYPE" "GPR65 WILD-TYPE" 
     TCGA-05-5429      TCGA-05-5715      TCGA-35-3615      TCGA-35-4122 
"GPR65 WILD-TYPE" "GPR65 WILD-TYPE" "GPR65 WILD-TYPE" "GPR65 WILD-TYPE" 
     TCGA-35-4123      TCGA-35-5375      TCGA-38-4625      TCGA-38-4626 
"GPR65 WILD-TYPE" "GPR65 WILD-TYPE" "GPR65 WILD-TYPE" "GPR65 WILD-TYPE" 
     TCGA-38-4627      TCGA-38-4628      TCGA-38-4629      TCGA-38-4630 
"GPR65 WILD-TYPE" "GPR65 WILD-TYPE" "GPR65 WILD-TYPE" "GPR65 WILD-TYPE" 
     TCGA-38-4631      TCGA-38-4632      TCGA-38-6178      TCGA-44-2655 
"GPR65 WILD-TYPE" "GPR65 WILD-TYPE" "GPR65 WILD-TYPE" "GPR65 WILD-TYPE" 
     TCGA-44-2656      TCGA-44-2657      TCGA-44-2659      TCGA-44-2661 
"GPR65 WILD-TYPE" "GPR65 WILD-TYPE" "GPR65 WILD-TYPE" "GPR65 WILD-TYPE" 
     TCGA-44-2662      TCGA-44-2665      TCGA-44-2666      TCGA-44-2668 
"GPR65 WILD-TYPE" "GPR65 WILD-TYPE" "GPR65 WILD-TYPE" "GPR65 WILD-TYPE" 
     TCGA-44-3396      TCGA-44-3398      TCGA-44-3918      TCGA-44-3919 
"GPR65 WILD-TYPE" "GPR65 WILD-TYPE" "GPR65 WILD-TYPE" "GPR65 WILD-TYPE" 
     TCGA-44-4112      TCGA-44-5643      TCGA-44-5645      TCGA-44-6144 
"GPR65 WILD-TYPE" "GPR65 WILD-TYPE" "GPR65 WILD-TYPE" "GPR65 WILD-TYPE" 
     TCGA-44-6145      TCGA-44-6146      TCGA-44-6147      TCGA-44-6148 
"GPR65 WILD-TYPE" "GPR65 WILD-TYPE" "GPR65 WILD-TYPE" "GPR65 WILD-TYPE" 
     TCGA-44-6774      TCGA-44-6775      TCGA-44-6776      TCGA-44-6777 
"GPR65 WILD-TYPE" "GPR65 WILD-TYPE" "GPR65 WILD-TYPE" "GPR65 WILD-TYPE" 
     TCGA-44-6778      TCGA-44-6779      TCGA-49-4486      TCGA-49-4487 
"GPR65 WILD-TYPE" "GPR65 WILD-TYPE" "GPR65 WILD-TYPE" "GPR65 WILD-TYPE" 
     TCGA-49-4488      TCGA-49-4490      TCGA-49-4494      TCGA-49-4501 
"GPR65 WILD-TYPE" "GPR65 WILD-TYPE" "GPR65 WILD-TYPE" "GPR65 WILD-TYPE" 
     TCGA-49-4505      TCGA-49-4506      TCGA-49-4507      TCGA-49-4510 
"GPR65 WILD-TYPE" "GPR65 WILD-TYPE" "GPR65 WILD-TYPE" "GPR65 WILD-TYPE" 
     TCGA-49-4512      TCGA-49-4514      TCGA-49-6742      TCGA-49-6743 
"GPR65 WILD-TYPE" "GPR65 WILD-TYPE" "GPR65 WILD-TYPE" "GPR65 WILD-TYPE" 
     TCGA-49-6744      TCGA-49-6745      TCGA-50-5044      TCGA-50-5045 
"GPR65 WILD-TYPE" "GPR65 WILD-TYPE" "GPR65 WILD-TYPE" "GPR65 WILD-TYPE" 
     TCGA-50-5049      TCGA-50-5051      TCGA-50-5055      TCGA-50-5066 
"GPR65 WILD-TYPE" "GPR65 WILD-TYPE" "GPR65 WILD-TYPE" "GPR65 WILD-TYPE" 
     TCGA-50-5068      TCGA-50-5072      TCGA-50-5930      TCGA-50-5931 
"GPR65 WILD-TYPE" "GPR65 WILD-TYPE" "GPR65 WILD-TYPE" "GPR65 WILD-TYPE" 
     TCGA-50-5932      TCGA-50-5933      TCGA-50-5935      TCGA-50-5936 
"GPR65 WILD-TYPE" "GPR65 WILD-TYPE" "GPR65 WILD-TYPE" "GPR65 WILD-TYPE" 
     TCGA-50-5939      TCGA-50-5941      TCGA-50-5942      TCGA-50-5944 
"GPR65 WILD-TYPE" "GPR65 WILD-TYPE" "GPR65 WILD-TYPE" "GPR65 WILD-TYPE" 
     TCGA-50-5946      TCGA-50-6590      TCGA-50-6591      TCGA-50-6592 
"GPR65 WILD-TYPE"   "GPR65 MUTATED" "GPR65 WILD-TYPE" "GPR65 WILD-TYPE" 
     TCGA-50-6593      TCGA-50-6594      TCGA-50-6595      TCGA-50-6597 
"GPR65 WILD-TYPE" "GPR65 WILD-TYPE" "GPR65 WILD-TYPE" "GPR65 WILD-TYPE" 
     TCGA-55-1592      TCGA-55-1594      TCGA-55-1595      TCGA-55-1596 
"GPR65 WILD-TYPE" "GPR65 WILD-TYPE" "GPR65 WILD-TYPE" "GPR65 WILD-TYPE" 
     TCGA-55-5899      TCGA-55-6543      TCGA-55-6642      TCGA-55-6712 
"GPR65 WILD-TYPE" "GPR65 WILD-TYPE" "GPR65 WILD-TYPE" "GPR65 WILD-TYPE" 
     TCGA-64-1676      TCGA-64-1677      TCGA-64-1678      TCGA-64-1680 
"GPR65 WILD-TYPE" "GPR65 WILD-TYPE" "GPR65 WILD-TYPE" "GPR65 WILD-TYPE" 
     TCGA-64-5774      TCGA-64-5775      TCGA-64-5778      TCGA-64-5779 
"GPR65 WILD-TYPE" "GPR65 WILD-TYPE" "GPR65 WILD-TYPE" "GPR65 WILD-TYPE" 
     TCGA-64-5781      TCGA-64-5815      TCGA-67-3770      TCGA-67-3771 
"GPR65 WILD-TYPE" "GPR65 WILD-TYPE" "GPR65 WILD-TYPE"   "GPR65 MUTATED" 
     TCGA-67-3772      TCGA-67-3773      TCGA-67-3774      TCGA-67-6215 
"GPR65 WILD-TYPE" "GPR65 WILD-TYPE" "GPR65 WILD-TYPE" "GPR65 WILD-TYPE" 
     TCGA-67-6216      TCGA-67-6217      TCGA-71-6725      TCGA-73-4658 
"GPR65 WILD-TYPE" "GPR65 WILD-TYPE" "GPR65 WILD-TYPE" "GPR65 WILD-TYPE" 
     TCGA-73-4659      TCGA-73-4662      TCGA-73-4666      TCGA-73-4668 
"GPR65 WILD-TYPE" "GPR65 WILD-TYPE" "GPR65 WILD-TYPE" "GPR65 WILD-TYPE" 
     TCGA-73-4670      TCGA-73-4675      TCGA-73-4676      TCGA-73-4677 
"GPR65 WILD-TYPE" "GPR65 WILD-TYPE" "GPR65 WILD-TYPE" "GPR65 WILD-TYPE" 
     TCGA-91-6828      TCGA-91-6829      TCGA-91-6831      TCGA-91-6835 
"GPR65 WILD-TYPE" "GPR65 WILD-TYPE" "GPR65 WILD-TYPE" "GPR65 WILD-TYPE" 
     TCGA-91-6836 
"GPR65 WILD-TYPE" 
     TCGA-05-4249      TCGA-05-4250      TCGA-05-4382      TCGA-05-4384 
"GPR65 WILD-TYPE" "GPR65 WILD-TYPE" "GPR65 WILD-TYPE" "GPR65 WILD-TYPE" 
     TCGA-05-4390      TCGA-05-4396      TCGA-05-4397      TCGA-05-4398 
"GPR65 WILD-TYPE" "GPR65 WILD-TYPE" "GPR65 WILD-TYPE" "GPR65 WILD-TYPE" 
     TCGA-05-4402      TCGA-05-4405      TCGA-05-4415      TCGA-05-4417 
"GPR65 WILD-TYPE" "GPR65 WILD-TYPE" "GPR65 WILD-TYPE" "GPR65 WILD-TYPE" 
     TCGA-05-4418      TCGA-05-4420      TCGA-05-4424      TCGA-05-4426 
"GPR65 WILD-TYPE" "GPR65 WILD-TYPE" "GPR65 WILD-TYPE" "GPR65 WILD-TYPE" 
     TCGA-05-4427      TCGA-05-4430      TCGA-05-4432      TCGA-05-4433 
"GPR65 WILD-TYPE" "GPR65 WILD-TYPE" "GPR65 WILD-TYPE" "GPR65 WILD-TYPE" 
     TCGA-05-4434      TCGA-05-5420      TCGA-05-5423      TCGA-05-5425 
"GPR65 WILD-TYPE" "GPR65 WILD-TYPE" "GPR65 WILD-TYPE" "GPR65 WILD-TYPE" 
     TCGA-05-5429      TCGA-05-5715      TCGA-35-3615      TCGA-35-4122 
"GPR65 WILD-TYPE" "GPR65 WILD-TYPE" "GPR65 WILD-TYPE" "GPR65 WILD-TYPE" 
     TCGA-35-4123      TCGA-35-5375      TCGA-38-4625      TCGA-38-4626 
"GPR65 WILD-TYPE" "GPR65 WILD-TYPE" "GPR65 WILD-TYPE" "GPR65 WILD-TYPE" 
     TCGA-38-4627      TCGA-38-4628      TCGA-38-4629      TCGA-38-4630 
"GPR65 WILD-TYPE" "GPR65 WILD-TYPE" "GPR65 WILD-TYPE" "GPR65 WILD-TYPE" 
     TCGA-38-4631      TCGA-38-4632      TCGA-38-6178      TCGA-44-2655 
"GPR65 WILD-TYPE" "GPR65 WILD-TYPE" "GPR65 WILD-TYPE" "GPR65 WILD-TYPE" 
     TCGA-44-2656      TCGA-44-2657      TCGA-44-2659      TCGA-44-2661 
"GPR65 WILD-TYPE" "GPR65 WILD-TYPE" "GPR65 WILD-TYPE" "GPR65 WILD-TYPE" 
     TCGA-44-2662      TCGA-44-2665      TCGA-44-2666      TCGA-44-2668 
"GPR65 WILD-TYPE" "GPR65 WILD-TYPE" "GPR65 WILD-TYPE" "GPR65 WILD-TYPE" 
     TCGA-44-3396      TCGA-44-3398      TCGA-44-3918      TCGA-44-3919 
"GPR65 WILD-TYPE" "GPR65 WILD-TYPE" "GPR65 WILD-TYPE" "GPR65 WILD-TYPE" 
     TCGA-44-4112      TCGA-44-5643      TCGA-44-5645      TCGA-44-6144 
"GPR65 WILD-TYPE" "GPR65 WILD-TYPE" "GPR65 WILD-TYPE" "GPR65 WILD-TYPE" 
     TCGA-44-6145      TCGA-44-6146      TCGA-44-6147      TCGA-44-6148 
"GPR65 WILD-TYPE" "GPR65 WILD-TYPE" "GPR65 WILD-TYPE" "GPR65 WILD-TYPE" 
     TCGA-44-6774      TCGA-44-6775      TCGA-44-6776      TCGA-44-6777 
"GPR65 WILD-TYPE" "GPR65 WILD-TYPE" "GPR65 WILD-TYPE" "GPR65 WILD-TYPE" 
     TCGA-44-6778      TCGA-44-6779      TCGA-49-4486      TCGA-49-4487 
"GPR65 WILD-TYPE" "GPR65 WILD-TYPE" "GPR65 WILD-TYPE" "GPR65 WILD-TYPE" 
     TCGA-49-4488      TCGA-49-4490      TCGA-49-4494      TCGA-49-4501 
"GPR65 WILD-TYPE" "GPR65 WILD-TYPE" "GPR65 WILD-TYPE" "GPR65 WILD-TYPE" 
     TCGA-49-4505      TCGA-49-4506      TCGA-49-4507      TCGA-49-4510 
"GPR65 WILD-TYPE" "GPR65 WILD-TYPE" "GPR65 WILD-TYPE" "GPR65 WILD-TYPE" 
     TCGA-49-4512      TCGA-49-4514      TCGA-49-6742      TCGA-49-6743 
"GPR65 WILD-TYPE" "GPR65 WILD-TYPE" "GPR65 WILD-TYPE" "GPR65 WILD-TYPE" 
     TCGA-49-6744      TCGA-49-6745      TCGA-50-5044      TCGA-50-5045 
"GPR65 WILD-TYPE" "GPR65 WILD-TYPE" "GPR65 WILD-TYPE" "GPR65 WILD-TYPE" 
     TCGA-50-5049      TCGA-50-5051      TCGA-50-5055      TCGA-50-5066 
"GPR65 WILD-TYPE" "GPR65 WILD-TYPE" "GPR65 WILD-TYPE" "GPR65 WILD-TYPE" 
     TCGA-50-5068      TCGA-50-5072      TCGA-50-5930      TCGA-50-5931 
"GPR65 WILD-TYPE" "GPR65 WILD-TYPE" "GPR65 WILD-TYPE" "GPR65 WILD-TYPE" 
     TCGA-50-5932      TCGA-50-5933      TCGA-50-5935      TCGA-50-5936 
"GPR65 WILD-TYPE" "GPR65 WILD-TYPE" "GPR65 WILD-TYPE" "GPR65 WILD-TYPE" 
     TCGA-50-5939      TCGA-50-5941      TCGA-50-5942      TCGA-50-5944 
"GPR65 WILD-TYPE" "GPR65 WILD-TYPE" "GPR65 WILD-TYPE" "GPR65 WILD-TYPE" 
     TCGA-50-5946      TCGA-50-6590      TCGA-50-6591      TCGA-50-6592 
"GPR65 WILD-TYPE"   "GPR65 MUTATED" "GPR65 WILD-TYPE" "GPR65 WILD-TYPE" 
     TCGA-50-6593      TCGA-50-6594      TCGA-50-6595      TCGA-50-6597 
"GPR65 WILD-TYPE" "GPR65 WILD-TYPE" "GPR65 WILD-TYPE" "GPR65 WILD-TYPE" 
     TCGA-55-1592      TCGA-55-1594      TCGA-55-1595      TCGA-55-1596 
"GPR65 WILD-TYPE" "GPR65 WILD-TYPE" "GPR65 WILD-TYPE" "GPR65 WILD-TYPE" 
     TCGA-55-5899      TCGA-55-6543      TCGA-55-6642      TCGA-55-6712 
"GPR65 WILD-TYPE" "GPR65 WILD-TYPE" "GPR65 WILD-TYPE" "GPR65 WILD-TYPE" 
     TCGA-64-1676      TCGA-64-1677      TCGA-64-1678      TCGA-64-1680 
"GPR65 WILD-TYPE" "GPR65 WILD-TYPE" "GPR65 WILD-TYPE" "GPR65 WILD-TYPE" 
     TCGA-64-5774      TCGA-64-5775      TCGA-64-5778      TCGA-64-5779 
"GPR65 WILD-TYPE" "GPR65 WILD-TYPE" "GPR65 WILD-TYPE" "GPR65 WILD-TYPE" 
     TCGA-64-5781      TCGA-64-5815      TCGA-67-3770      TCGA-67-3771 
"GPR65 WILD-TYPE" "GPR65 WILD-TYPE" "GPR65 WILD-TYPE"   "GPR65 MUTATED" 
     TCGA-67-3772      TCGA-67-3773      TCGA-67-3774      TCGA-67-6215 
"GPR65 WILD-TYPE" "GPR65 WILD-TYPE" "GPR65 WILD-TYPE" "GPR65 WILD-TYPE" 
     TCGA-67-6216      TCGA-67-6217      TCGA-71-6725      TCGA-73-4658 
"GPR65 WILD-TYPE" "GPR65 WILD-TYPE" "GPR65 WILD-TYPE" "GPR65 WILD-TYPE" 
     TCGA-73-4659      TCGA-73-4662      TCGA-73-4666      TCGA-73-4668 
"GPR65 WILD-TYPE" "GPR65 WILD-TYPE" "GPR65 WILD-TYPE" "GPR65 WILD-TYPE" 
     TCGA-73-4670      TCGA-73-4675      TCGA-73-4676      TCGA-73-4677 
"GPR65 WILD-TYPE" "GPR65 WILD-TYPE" "GPR65 WILD-TYPE" "GPR65 WILD-TYPE" 
     TCGA-91-6828      TCGA-91-6829      TCGA-91-6831      TCGA-91-6835 
"GPR65 WILD-TYPE" "GPR65 WILD-TYPE" "GPR65 WILD-TYPE" "GPR65 WILD-TYPE" 
     TCGA-91-6836 
"GPR65 WILD-TYPE" 
[1] "Remove cluster labels:" "GPR65 MUTATED"         
clus
  GPR65 MUTATED GPR65 WILD-TYPE 
              2             147 
     TCGA-05-4249      TCGA-05-4250      TCGA-05-4382      TCGA-05-4384 
"GPR65 WILD-TYPE" "GPR65 WILD-TYPE" "GPR65 WILD-TYPE" "GPR65 WILD-TYPE" 
     TCGA-05-4390      TCGA-05-4396      TCGA-05-4397      TCGA-05-4398 
"GPR65 WILD-TYPE" "GPR65 WILD-TYPE" "GPR65 WILD-TYPE" "GPR65 WILD-TYPE" 
     TCGA-05-4402      TCGA-05-4405      TCGA-05-4415      TCGA-05-4417 
"GPR65 WILD-TYPE" "GPR65 WILD-TYPE" "GPR65 WILD-TYPE" "GPR65 WILD-TYPE" 
     TCGA-05-4418      TCGA-05-4420      TCGA-05-4424      TCGA-05-4426 
"GPR65 WILD-TYPE" "GPR65 WILD-TYPE" "GPR65 WILD-TYPE" "GPR65 WILD-TYPE" 
     TCGA-05-4427      TCGA-05-4430      TCGA-05-4432      TCGA-05-4433 
"GPR65 WILD-TYPE" "GPR65 WILD-TYPE" "GPR65 WILD-TYPE" "GPR65 WILD-TYPE" 
     TCGA-05-4434      TCGA-05-5420      TCGA-05-5423      TCGA-05-5425 
"GPR65 WILD-TYPE" "GPR65 WILD-TYPE" "GPR65 WILD-TYPE" "GPR65 WILD-TYPE" 
     TCGA-05-5429      TCGA-05-5715      TCGA-35-3615      TCGA-35-4122 
"GPR65 WILD-TYPE" "GPR65 WILD-TYPE" "GPR65 WILD-TYPE" "GPR65 WILD-TYPE" 
     TCGA-35-4123      TCGA-35-5375      TCGA-38-4625      TCGA-38-4626 
"GPR65 WILD-TYPE" "GPR65 WILD-TYPE" "GPR65 WILD-TYPE" "GPR65 WILD-TYPE" 
     TCGA-38-4627      TCGA-38-4628      TCGA-38-4629      TCGA-38-4630 
"GPR65 WILD-TYPE" "GPR65 WILD-TYPE" "GPR65 WILD-TYPE" "GPR65 WILD-TYPE" 
     TCGA-38-4631      TCGA-38-4632      TCGA-38-6178      TCGA-44-2655 
"GPR65 WILD-TYPE" "GPR65 WILD-TYPE" "GPR65 WILD-TYPE" "GPR65 WILD-TYPE" 
     TCGA-44-2656      TCGA-44-2657      TCGA-44-2659      TCGA-44-2661 
"GPR65 WILD-TYPE" "GPR65 WILD-TYPE" "GPR65 WILD-TYPE" "GPR65 WILD-TYPE" 
     TCGA-44-2662      TCGA-44-2665      TCGA-44-2666      TCGA-44-2668 
"GPR65 WILD-TYPE" "GPR65 WILD-TYPE" "GPR65 WILD-TYPE" "GPR65 WILD-TYPE" 
     TCGA-44-3396      TCGA-44-3398      TCGA-44-3918      TCGA-44-3919 
"GPR65 WILD-TYPE" "GPR65 WILD-TYPE" "GPR65 WILD-TYPE" "GPR65 WILD-TYPE" 
     TCGA-44-4112      TCGA-44-5643      TCGA-44-5645      TCGA-44-6144 
"GPR65 WILD-TYPE" "GPR65 WILD-TYPE" "GPR65 WILD-TYPE" "GPR65 WILD-TYPE" 
     TCGA-44-6145      TCGA-44-6146      TCGA-44-6147      TCGA-44-6148 
"GPR65 WILD-TYPE" "GPR65 WILD-TYPE" "GPR65 WILD-TYPE" "GPR65 WILD-TYPE" 
     TCGA-44-6774      TCGA-44-6775      TCGA-44-6776      TCGA-44-6777 
"GPR65 WILD-TYPE" "GPR65 WILD-TYPE" "GPR65 WILD-TYPE" "GPR65 WILD-TYPE" 
     TCGA-44-6778      TCGA-44-6779      TCGA-49-4486      TCGA-49-4487 
"GPR65 WILD-TYPE" "GPR65 WILD-TYPE" "GPR65 WILD-TYPE" "GPR65 WILD-TYPE" 
     TCGA-49-4488      TCGA-49-4490      TCGA-49-4494      TCGA-49-4501 
"GPR65 WILD-TYPE" "GPR65 WILD-TYPE" "GPR65 WILD-TYPE" "GPR65 WILD-TYPE" 
     TCGA-49-4505      TCGA-49-4506      TCGA-49-4507      TCGA-49-4510 
"GPR65 WILD-TYPE" "GPR65 WILD-TYPE" "GPR65 WILD-TYPE" "GPR65 WILD-TYPE" 
     TCGA-49-4512      TCGA-49-4514      TCGA-49-6742      TCGA-49-6743 
"GPR65 WILD-TYPE" "GPR65 WILD-TYPE" "GPR65 WILD-TYPE" "GPR65 WILD-TYPE" 
     TCGA-49-6744      TCGA-49-6745      TCGA-50-5044      TCGA-50-5045 
"GPR65 WILD-TYPE" "GPR65 WILD-TYPE" "GPR65 WILD-TYPE" "GPR65 WILD-TYPE" 
     TCGA-50-5049      TCGA-50-5051      TCGA-50-5055      TCGA-50-5066 
"GPR65 WILD-TYPE" "GPR65 WILD-TYPE" "GPR65 WILD-TYPE" "GPR65 WILD-TYPE" 
     TCGA-50-5068      TCGA-50-5072      TCGA-50-5930      TCGA-50-5931 
"GPR65 WILD-TYPE" "GPR65 WILD-TYPE" "GPR65 WILD-TYPE" "GPR65 WILD-TYPE" 
     TCGA-50-5932      TCGA-50-5933      TCGA-50-5935      TCGA-50-5936 
"GPR65 WILD-TYPE" "GPR65 WILD-TYPE" "GPR65 WILD-TYPE" "GPR65 WILD-TYPE" 
     TCGA-50-5939      TCGA-50-5941      TCGA-50-5942      TCGA-50-5944 
"GPR65 WILD-TYPE" "GPR65 WILD-TYPE" "GPR65 WILD-TYPE" "GPR65 WILD-TYPE" 
     TCGA-50-5946      TCGA-50-6591      TCGA-50-6592      TCGA-50-6593 
"GPR65 WILD-TYPE" "GPR65 WILD-TYPE" "GPR65 WILD-TYPE" "GPR65 WILD-TYPE" 
     TCGA-50-6594      TCGA-50-6595      TCGA-50-6597      TCGA-55-1592 
"GPR65 WILD-TYPE" "GPR65 WILD-TYPE" "GPR65 WILD-TYPE" "GPR65 WILD-TYPE" 
     TCGA-55-1594      TCGA-55-1595      TCGA-55-1596      TCGA-55-5899 
"GPR65 WILD-TYPE" "GPR65 WILD-TYPE" "GPR65 WILD-TYPE" "GPR65 WILD-TYPE" 
     TCGA-55-6543      TCGA-55-6642      TCGA-55-6712      TCGA-64-1676 
"GPR65 WILD-TYPE" "GPR65 WILD-TYPE" "GPR65 WILD-TYPE" "GPR65 WILD-TYPE" 
     TCGA-64-1677      TCGA-64-1678      TCGA-64-1680      TCGA-64-5774 
"GPR65 WILD-TYPE" "GPR65 WILD-TYPE" "GPR65 WILD-TYPE" "GPR65 WILD-TYPE" 
     TCGA-64-5775      TCGA-64-5778      TCGA-64-5779      TCGA-64-5781 
"GPR65 WILD-TYPE" "GPR65 WILD-TYPE" "GPR65 WILD-TYPE" "GPR65 WILD-TYPE" 
     TCGA-64-5815      TCGA-67-3770      TCGA-67-3772      TCGA-67-3773 
"GPR65 WILD-TYPE" "GPR65 WILD-TYPE" "GPR65 WILD-TYPE" "GPR65 WILD-TYPE" 
     TCGA-67-3774      TCGA-67-6215      TCGA-67-6216      TCGA-67-6217 
"GPR65 WILD-TYPE" "GPR65 WILD-TYPE" "GPR65 WILD-TYPE" "GPR65 WILD-TYPE" 
     TCGA-71-6725      TCGA-73-4658      TCGA-73-4659      TCGA-73-4662 
"GPR65 WILD-TYPE" "GPR65 WILD-TYPE" "GPR65 WILD-TYPE" "GPR65 WILD-TYPE" 
     TCGA-73-4666      TCGA-73-4668      TCGA-73-4670      TCGA-73-4675 
"GPR65 WILD-TYPE" "GPR65 WILD-TYPE" "GPR65 WILD-TYPE" "GPR65 WILD-TYPE" 
     TCGA-73-4676      TCGA-73-4677      TCGA-91-6828      TCGA-91-6829 
"GPR65 WILD-TYPE" "GPR65 WILD-TYPE" "GPR65 WILD-TYPE" "GPR65 WILD-TYPE" 
     TCGA-91-6831      TCGA-91-6835      TCGA-91-6836 
"GPR65 WILD-TYPE" "GPR65 WILD-TYPE" "GPR65 WILD-TYPE" 
D166V2, continuous
D166V3, binary
[1] "tbl2"
                 cls
clus              [,1] [,2]
  GPR65 MUTATED      2    1
  GPR65 WILD-TYPE   91   78
        clus
vv       GPR65 MUTATED GPR65 WILD-TYPE
  FEMALE             2              91
  MALE               1              78
D166V4, continuous
D166V5, multiclass
D166V6, multiclass
    clus
vv   GPR65 MUTATED GPR65 WILD-TYPE
  T1             1              40
  T2             2             106
  T3             0              14
  T4             0               8
D166V7, multiclass
       clus
vv      GPR65 MUTATED GPR65 WILD-TYPE
  N0                3              92
  N1                0              37
  N2+N3             0              35
D166V8, multiclass
    clus
vv   GPR65 MUTATED GPR65 WILD-TYPE
  M0             3             134
  M1             0               9
  MX             0              22
D166V9, multiclass
     clus
vv    GPR65 MUTATED GPR65 WILD-TYPE
  I               3              85
  II              0              33
  III             0              39
  IV              0               9
D166V10, binary
[1] "tbl2"
                 cls
clus              [,1] [,2]
  GPR65 MUTATED      0    3
  GPR65 WILD-TYPE   16  153
     clus
vv    GPR65 MUTATED GPR65 WILD-TYPE
  NO              0              16
  YES             3             153
D166V11, continuous
[1] "Remove cluster labels:" "GPR65 MUTATED"         
clus
  GPR65 MUTATED GPR65 WILD-TYPE 
              2             112 
     TCGA-05-4244      TCGA-05-4249      TCGA-05-4250      TCGA-05-4382 
"GPR65 WILD-TYPE" "GPR65 WILD-TYPE" "GPR65 WILD-TYPE" "GPR65 WILD-TYPE" 
     TCGA-05-4384      TCGA-05-4389      TCGA-05-4390      TCGA-05-4395 
"GPR65 WILD-TYPE" "GPR65 WILD-TYPE" "GPR65 WILD-TYPE" "GPR65 WILD-TYPE" 
     TCGA-05-4396      TCGA-05-4397      TCGA-05-4398      TCGA-05-4402 
"GPR65 WILD-TYPE" "GPR65 WILD-TYPE" "GPR65 WILD-TYPE" "GPR65 WILD-TYPE" 
     TCGA-05-4405      TCGA-05-4415      TCGA-05-4417      TCGA-05-4418 
"GPR65 WILD-TYPE" "GPR65 WILD-TYPE" "GPR65 WILD-TYPE" "GPR65 WILD-TYPE" 
     TCGA-05-4420      TCGA-05-4422      TCGA-05-4424      TCGA-05-4425 
"GPR65 WILD-TYPE" "GPR65 WILD-TYPE" "GPR65 WILD-TYPE" "GPR65 WILD-TYPE" 
     TCGA-05-4426      TCGA-05-4427      TCGA-05-4430      TCGA-05-4432 
"GPR65 WILD-TYPE" "GPR65 WILD-TYPE" "GPR65 WILD-TYPE" "GPR65 WILD-TYPE" 
     TCGA-05-4433      TCGA-05-4434      TCGA-05-5420      TCGA-05-5423 
"GPR65 WILD-TYPE" "GPR65 WILD-TYPE" "GPR65 WILD-TYPE" "GPR65 WILD-TYPE" 
     TCGA-05-5425      TCGA-05-5428      TCGA-35-4122      TCGA-35-4123 
"GPR65 WILD-TYPE" "GPR65 WILD-TYPE" "GPR65 WILD-TYPE" "GPR65 WILD-TYPE" 
     TCGA-35-5375      TCGA-38-4625      TCGA-38-4626      TCGA-38-4629 
"GPR65 WILD-TYPE" "GPR65 WILD-TYPE" "GPR65 WILD-TYPE" "GPR65 WILD-TYPE" 
     TCGA-38-4631      TCGA-38-4632      TCGA-44-2655      TCGA-44-2656 
"GPR65 WILD-TYPE" "GPR65 WILD-TYPE" "GPR65 WILD-TYPE" "GPR65 WILD-TYPE" 
     TCGA-44-2657      TCGA-44-2659      TCGA-44-2662      TCGA-44-2666 
"GPR65 WILD-TYPE" "GPR65 WILD-TYPE" "GPR65 WILD-TYPE" "GPR65 WILD-TYPE" 
     TCGA-44-2668      TCGA-44-3396      TCGA-44-3398      TCGA-44-3918 
"GPR65 WILD-TYPE" "GPR65 WILD-TYPE" "GPR65 WILD-TYPE" "GPR65 WILD-TYPE" 
     TCGA-44-4112      TCGA-44-5643      TCGA-44-5645      TCGA-44-6144 
"GPR65 WILD-TYPE" "GPR65 WILD-TYPE" "GPR65 WILD-TYPE" "GPR65 WILD-TYPE" 
     TCGA-44-6145      TCGA-44-6146      TCGA-44-6148      TCGA-44-6774 
"GPR65 WILD-TYPE" "GPR65 WILD-TYPE" "GPR65 WILD-TYPE" "GPR65 WILD-TYPE" 
     TCGA-44-6775      TCGA-44-6776      TCGA-44-6777      TCGA-44-6778 
"GPR65 WILD-TYPE" "GPR65 WILD-TYPE" "GPR65 WILD-TYPE" "GPR65 WILD-TYPE" 
     TCGA-44-6779      TCGA-49-4486      TCGA-49-4487      TCGA-49-4490 
"GPR65 WILD-TYPE" "GPR65 WILD-TYPE" "GPR65 WILD-TYPE" "GPR65 WILD-TYPE" 
     TCGA-49-4494      TCGA-49-4505      TCGA-49-4506      TCGA-49-4507 
"GPR65 WILD-TYPE" "GPR65 WILD-TYPE" "GPR65 WILD-TYPE" "GPR65 WILD-TYPE" 
     TCGA-49-4510      TCGA-49-4514      TCGA-49-6742      TCGA-49-6743 
"GPR65 WILD-TYPE" "GPR65 WILD-TYPE" "GPR65 WILD-TYPE" "GPR65 WILD-TYPE" 
     TCGA-49-6744      TCGA-49-6745      TCGA-49-6767      TCGA-50-5051 
"GPR65 WILD-TYPE" "GPR65 WILD-TYPE" "GPR65 WILD-TYPE" "GPR65 WILD-TYPE" 
     TCGA-50-5072      TCGA-50-5931      TCGA-50-5939      TCGA-50-5941 
"GPR65 WILD-TYPE" "GPR65 WILD-TYPE" "GPR65 WILD-TYPE" "GPR65 WILD-TYPE" 
     TCGA-50-5942      TCGA-55-1596      TCGA-55-6543      TCGA-64-1676 
"GPR65 WILD-TYPE" "GPR65 WILD-TYPE" "GPR65 WILD-TYPE" "GPR65 WILD-TYPE" 
     TCGA-64-1677      TCGA-64-1678      TCGA-64-1680      TCGA-64-5774 
"GPR65 WILD-TYPE" "GPR65 WILD-TYPE" "GPR65 WILD-TYPE" "GPR65 WILD-TYPE" 
     TCGA-64-5775      TCGA-64-5778      TCGA-64-5779      TCGA-64-5781 
"GPR65 WILD-TYPE" "GPR65 WILD-TYPE" "GPR65 WILD-TYPE" "GPR65 WILD-TYPE" 
     TCGA-64-5815      TCGA-73-4658      TCGA-73-4659      TCGA-73-4662 
"GPR65 WILD-TYPE" "GPR65 WILD-TYPE" "GPR65 WILD-TYPE" "GPR65 WILD-TYPE" 
     TCGA-73-4666      TCGA-73-4668      TCGA-73-4670      TCGA-73-4675 
"GPR65 WILD-TYPE" "GPR65 WILD-TYPE" "GPR65 WILD-TYPE" "GPR65 WILD-TYPE" 
     TCGA-73-4676      TCGA-75-5122      TCGA-75-5125      TCGA-75-5126 
"GPR65 WILD-TYPE" "GPR65 WILD-TYPE" "GPR65 WILD-TYPE" "GPR65 WILD-TYPE" 
     TCGA-75-6203      TCGA-75-6206      TCGA-75-6207      TCGA-75-6211 
"GPR65 WILD-TYPE" "GPR65 WILD-TYPE" "GPR65 WILD-TYPE" "GPR65 WILD-TYPE" 
     TCGA-80-5611      TCGA-91-6829      TCGA-91-6835      TCGA-91-6836 
"GPR65 WILD-TYPE" "GPR65 WILD-TYPE" "GPR65 WILD-TYPE" "GPR65 WILD-TYPE" 
D166V12, continuous
[1] "Remove cluster labels:" "GPR65 MUTATED"         
clus
  GPR65 MUTATED GPR65 WILD-TYPE 
              2              80 
     TCGA-05-4384      TCGA-05-4390      TCGA-05-4396      TCGA-05-4403 
"GPR65 WILD-TYPE" "GPR65 WILD-TYPE" "GPR65 WILD-TYPE" "GPR65 WILD-TYPE" 
     TCGA-05-4405      TCGA-05-4415      TCGA-05-4417      TCGA-05-4424 
"GPR65 WILD-TYPE" "GPR65 WILD-TYPE" "GPR65 WILD-TYPE" "GPR65 WILD-TYPE" 
     TCGA-05-4427      TCGA-05-4433      TCGA-05-5420      TCGA-05-5423 
"GPR65 WILD-TYPE" "GPR65 WILD-TYPE" "GPR65 WILD-TYPE" "GPR65 WILD-TYPE" 
     TCGA-05-5425      TCGA-05-5428      TCGA-35-4122      TCGA-35-4123 
"GPR65 WILD-TYPE" "GPR65 WILD-TYPE" "GPR65 WILD-TYPE" "GPR65 WILD-TYPE" 
     TCGA-35-5375      TCGA-38-4629      TCGA-38-4632      TCGA-44-2655 
"GPR65 WILD-TYPE" "GPR65 WILD-TYPE" "GPR65 WILD-TYPE" "GPR65 WILD-TYPE" 
     TCGA-44-2656      TCGA-44-2657      TCGA-44-2659      TCGA-44-2662 
"GPR65 WILD-TYPE" "GPR65 WILD-TYPE" "GPR65 WILD-TYPE" "GPR65 WILD-TYPE" 
     TCGA-44-2668      TCGA-44-3398      TCGA-44-3918      TCGA-44-4112 
"GPR65 WILD-TYPE" "GPR65 WILD-TYPE" "GPR65 WILD-TYPE" "GPR65 WILD-TYPE" 
     TCGA-44-5645      TCGA-44-6145      TCGA-44-6146      TCGA-44-6147 
"GPR65 WILD-TYPE" "GPR65 WILD-TYPE" "GPR65 WILD-TYPE" "GPR65 WILD-TYPE" 
     TCGA-44-6148      TCGA-44-6775      TCGA-44-6776      TCGA-44-6777 
"GPR65 WILD-TYPE" "GPR65 WILD-TYPE" "GPR65 WILD-TYPE" "GPR65 WILD-TYPE" 
     TCGA-44-6778      TCGA-44-6779      TCGA-49-4486      TCGA-49-4488 
"GPR65 WILD-TYPE" "GPR65 WILD-TYPE" "GPR65 WILD-TYPE" "GPR65 WILD-TYPE" 
     TCGA-49-4494      TCGA-49-4505      TCGA-49-4507      TCGA-50-5051 
"GPR65 WILD-TYPE" "GPR65 WILD-TYPE" "GPR65 WILD-TYPE" "GPR65 WILD-TYPE" 
     TCGA-50-5072      TCGA-50-5939      TCGA-50-5942      TCGA-50-5946 
"GPR65 WILD-TYPE" "GPR65 WILD-TYPE" "GPR65 WILD-TYPE" "GPR65 WILD-TYPE" 
     TCGA-50-6594      TCGA-50-6595      TCGA-55-1592      TCGA-55-1595 
"GPR65 WILD-TYPE" "GPR65 WILD-TYPE" "GPR65 WILD-TYPE" "GPR65 WILD-TYPE" 
     TCGA-55-6543      TCGA-55-6712      TCGA-64-1678      TCGA-64-1680 
"GPR65 WILD-TYPE" "GPR65 WILD-TYPE" "GPR65 WILD-TYPE" "GPR65 WILD-TYPE" 
     TCGA-64-5774      TCGA-64-5778      TCGA-64-5779      TCGA-64-5781 
"GPR65 WILD-TYPE" "GPR65 WILD-TYPE" "GPR65 WILD-TYPE" "GPR65 WILD-TYPE" 
     TCGA-64-5815      TCGA-67-6217      TCGA-73-4659      TCGA-73-4662 
"GPR65 WILD-TYPE" "GPR65 WILD-TYPE" "GPR65 WILD-TYPE" "GPR65 WILD-TYPE" 
     TCGA-73-4666      TCGA-73-4668      TCGA-73-4670      TCGA-73-4675 
"GPR65 WILD-TYPE" "GPR65 WILD-TYPE" "GPR65 WILD-TYPE" "GPR65 WILD-TYPE" 
     TCGA-73-4676      TCGA-73-4677      TCGA-75-5122      TCGA-75-5125 
"GPR65 WILD-TYPE" "GPR65 WILD-TYPE" "GPR65 WILD-TYPE" "GPR65 WILD-TYPE" 
     TCGA-75-5126      TCGA-75-5146      TCGA-75-6206      TCGA-75-6207 
"GPR65 WILD-TYPE" "GPR65 WILD-TYPE" "GPR65 WILD-TYPE" "GPR65 WILD-TYPE" 
     TCGA-80-5611      TCGA-91-6828      TCGA-91-6829      TCGA-91-6835 
"GPR65 WILD-TYPE" "GPR65 WILD-TYPE" "GPR65 WILD-TYPE" "GPR65 WILD-TYPE" 
D166V13, multiclass
                                             clus
vv                                            GPR65 MUTATED GPR65 WILD-TYPE
  CURRENT REFORMED SMOKER FOR < OR = 15 YEARS             3              59
  CURRENT REFORMED SMOKER FOR > 15 YEARS                  0              46
  CURRENT SMOKER                                          0              28
  LIFELONG NON-SMOKER                                     0              24
D166V14, continuous
[1] "Remove cluster labels:" "GPR65 MUTATED"         
clus
  GPR65 MUTATED GPR65 WILD-TYPE 
              1              67 
     TCGA-05-4384      TCGA-05-4390      TCGA-05-4396      TCGA-05-4405 
"GPR65 WILD-TYPE" "GPR65 WILD-TYPE" "GPR65 WILD-TYPE" "GPR65 WILD-TYPE" 
     TCGA-05-4415      TCGA-05-4417      TCGA-05-4424      TCGA-05-4427 
"GPR65 WILD-TYPE" "GPR65 WILD-TYPE" "GPR65 WILD-TYPE" "GPR65 WILD-TYPE" 
     TCGA-05-4433      TCGA-05-5420      TCGA-05-5423      TCGA-05-5425 
"GPR65 WILD-TYPE" "GPR65 WILD-TYPE" "GPR65 WILD-TYPE" "GPR65 WILD-TYPE" 
     TCGA-05-5428      TCGA-35-4122      TCGA-35-4123      TCGA-35-5375 
"GPR65 WILD-TYPE" "GPR65 WILD-TYPE" "GPR65 WILD-TYPE" "GPR65 WILD-TYPE" 
     TCGA-38-4625      TCGA-38-4626      TCGA-44-2655      TCGA-44-2656 
"GPR65 WILD-TYPE" "GPR65 WILD-TYPE" "GPR65 WILD-TYPE" "GPR65 WILD-TYPE" 
     TCGA-44-2657      TCGA-44-2659      TCGA-44-2662      TCGA-44-2666 
"GPR65 WILD-TYPE" "GPR65 WILD-TYPE" "GPR65 WILD-TYPE" "GPR65 WILD-TYPE" 
     TCGA-44-2668      TCGA-44-3396      TCGA-44-3398      TCGA-44-3918 
"GPR65 WILD-TYPE" "GPR65 WILD-TYPE" "GPR65 WILD-TYPE" "GPR65 WILD-TYPE" 
     TCGA-44-4112      TCGA-44-5645      TCGA-44-6144      TCGA-44-6145 
"GPR65 WILD-TYPE" "GPR65 WILD-TYPE" "GPR65 WILD-TYPE" "GPR65 WILD-TYPE" 
     TCGA-44-6147      TCGA-44-6148      TCGA-44-6774      TCGA-44-6775 
"GPR65 WILD-TYPE" "GPR65 WILD-TYPE" "GPR65 WILD-TYPE" "GPR65 WILD-TYPE" 
     TCGA-44-6776      TCGA-44-6777      TCGA-44-6778      TCGA-44-6779 
"GPR65 WILD-TYPE" "GPR65 WILD-TYPE" "GPR65 WILD-TYPE" "GPR65 WILD-TYPE" 
     TCGA-49-4486      TCGA-49-4494      TCGA-49-4505      TCGA-55-1592 
"GPR65 WILD-TYPE" "GPR65 WILD-TYPE" "GPR65 WILD-TYPE" "GPR65 WILD-TYPE" 
     TCGA-55-1594      TCGA-55-1595      TCGA-55-1596      TCGA-55-5899 
"GPR65 WILD-TYPE" "GPR65 WILD-TYPE" "GPR65 WILD-TYPE" "GPR65 WILD-TYPE" 
     TCGA-55-6642      TCGA-55-6712      TCGA-64-1677      TCGA-64-1678 
"GPR65 WILD-TYPE" "GPR65 WILD-TYPE" "GPR65 WILD-TYPE" "GPR65 WILD-TYPE" 
     TCGA-64-1680      TCGA-64-5774      TCGA-64-5775      TCGA-64-5778 
"GPR65 WILD-TYPE" "GPR65 WILD-TYPE" "GPR65 WILD-TYPE" "GPR65 WILD-TYPE" 
     TCGA-64-5779      TCGA-64-5781      TCGA-73-4659      TCGA-73-4662 
"GPR65 WILD-TYPE" "GPR65 WILD-TYPE" "GPR65 WILD-TYPE" "GPR65 WILD-TYPE" 
     TCGA-73-4666      TCGA-73-4668      TCGA-73-4670      TCGA-73-4675 
"GPR65 WILD-TYPE" "GPR65 WILD-TYPE" "GPR65 WILD-TYPE" "GPR65 WILD-TYPE" 
     TCGA-73-4676      TCGA-91-6829      TCGA-91-6836 
"GPR65 WILD-TYPE" "GPR65 WILD-TYPE" "GPR65 WILD-TYPE" 

Clustering(167) Variable = RIMS4 MUTATION ANALYSIS
D167V1, survival
                 sevent
clus2              0  1
  RIMS4 MUTATED    5  1
  RIMS4 WILD-TYPE 94 49
  RIMS4 MUTATED RIMS4 WILD-TYPE 
              6             143 
  RIMS4 MUTATED RIMS4 WILD-TYPE 
              1              49 
$`RIMS4 MUTATED`
TCGA-05-4382 TCGA-44-3918 TCGA-49-4494 TCGA-50-5066 TCGA-64-5815 TCGA-73-4666 
       19.92         6.44        35.54         9.76         7.33        20.28 

$`RIMS4 WILD-TYPE`
TCGA-05-4249 TCGA-05-4250 TCGA-05-4384 TCGA-05-4390 TCGA-05-4396 TCGA-05-4397 
       38.07         3.98        14.01        37.02         9.96        24.03 
TCGA-05-4398 TCGA-05-4402 TCGA-05-4405 TCGA-05-4415 TCGA-05-4417 TCGA-05-4418 
       47.05         8.02        20.05         2.96        14.93         8.98 
TCGA-05-4420 TCGA-05-4424 TCGA-05-4426 TCGA-05-4427 TCGA-05-4430 TCGA-05-4432 
       29.95        30.02        26.01        26.01        25.02        25.02 
TCGA-05-4433 TCGA-05-4434 TCGA-05-5420 TCGA-05-5423 TCGA-05-5425 TCGA-05-5429 
       24.00        15.02         1.02         4.96         2.96         0.99 
TCGA-05-5715 TCGA-35-3615 TCGA-35-4122 TCGA-35-4123 TCGA-35-5375 TCGA-38-4625 
        2.04         0.46         7.36         5.95         8.68        47.61 
TCGA-38-4626 TCGA-38-4627 TCGA-38-4628 TCGA-38-4629 TCGA-38-4630 TCGA-38-4631 
       85.32        37.71        49.02        28.37        35.28        11.64 
TCGA-38-4632 TCGA-38-6178 TCGA-44-2655 TCGA-44-2656 TCGA-44-2657 TCGA-44-2659 
       44.61         5.19        18.87        19.10        13.15        17.39 
TCGA-44-2661 TCGA-44-2662 TCGA-44-2665 TCGA-44-2666 TCGA-44-2668 TCGA-44-3396 
        3.39        15.78        13.15         3.19         8.09        10.22 
TCGA-44-3398 TCGA-44-3919 TCGA-44-4112 TCGA-44-5643 TCGA-44-5645 TCGA-44-6144 
        8.32         6.21         4.60         3.48         6.84         0.30 
TCGA-44-6145 TCGA-44-6146 TCGA-44-6147 TCGA-44-6148 TCGA-44-6774 TCGA-44-6775 
        3.35         9.93         7.76         3.12         5.42         2.70 
TCGA-44-6776 TCGA-44-6777 TCGA-44-6778 TCGA-44-6779 TCGA-49-4486 TCGA-49-4487 
       63.72        32.45        36.49        16.41        76.21        28.11 
TCGA-49-4488 TCGA-49-4490 TCGA-49-4501 TCGA-49-4505 TCGA-49-4506 TCGA-49-4507 
       28.57        12.66        46.72        14.07        32.84         8.81 
TCGA-49-4510 TCGA-49-4512 TCGA-49-4514 TCGA-49-6742 TCGA-49-6743 TCGA-49-6744 
       29.46        29.75        43.20        15.02        12.13        12.99 
TCGA-49-6745 TCGA-50-5044 TCGA-50-5045 TCGA-50-5049 TCGA-50-5051 TCGA-50-5055 
        4.93        20.48        71.47        48.82        14.96        25.81 
TCGA-50-5068 TCGA-50-5072 TCGA-50-5930 TCGA-50-5931 TCGA-50-5932 TCGA-50-5933 
       49.28         8.05         9.27         8.78        35.87        77.88 
TCGA-50-5935 TCGA-50-5936 TCGA-50-5939 TCGA-50-5941 TCGA-50-5942 TCGA-50-5944 
       21.47         8.45        15.12         9.37         4.44        12.26 
TCGA-50-5946 TCGA-50-6590 TCGA-50-6591 TCGA-50-6592 TCGA-50-6593 TCGA-50-6594 
       11.47        42.31         3.88        25.51        11.05        12.16 
TCGA-50-6595 TCGA-50-6597 TCGA-55-1592 TCGA-55-1594 TCGA-55-1595 TCGA-55-1596 
        6.21        33.37        23.05        38.73        48.62        45.17 
TCGA-55-5899 TCGA-55-6543 TCGA-55-6642 TCGA-55-6712 TCGA-64-1676 TCGA-64-1677 
        2.86         0.07        32.61         0.79        56.81        20.65 
TCGA-64-1678 TCGA-64-1680 TCGA-64-5774 TCGA-64-5775 TCGA-64-5778 TCGA-64-5779 
       39.09        37.02        83.84         0.10        30.44        16.67 
TCGA-64-5781 TCGA-67-3770 TCGA-67-3771 TCGA-67-3772 TCGA-67-3773 TCGA-67-3774 
       39.52         0.99         1.97         0.59         2.04         0.59 
TCGA-67-6215 TCGA-67-6216 TCGA-67-6217 TCGA-71-6725 TCGA-73-4658 TCGA-73-4659 
        0.89         0.69        13.87         2.01        52.57        23.38 
TCGA-73-4662 TCGA-73-4668 TCGA-73-4670 TCGA-73-4675 TCGA-73-4676 TCGA-73-4677 
       29.95        15.35         0.46         1.32         4.01         1.25 
TCGA-91-6828 TCGA-91-6829 TCGA-91-6831 TCGA-91-6835 TCGA-91-6836 
        1.22        41.33         1.28         1.15         0.36 

  RIMS4 MUTATED RIMS4 WILD-TYPE 
           6.44            0.07 
  RIMS4 MUTATED RIMS4 WILD-TYPE 
          35.54           85.32 
  RIMS4 MUTATED RIMS4 WILD-TYPE 
          14.84           13.87 
[1] "6.4 - 35.5 (14.8)" "0.1 - 85.3 (13.9)"
     TCGA-05-4249      TCGA-05-4250      TCGA-05-4382      TCGA-05-4384 
"RIMS4 WILD-TYPE" "RIMS4 WILD-TYPE"   "RIMS4 MUTATED" "RIMS4 WILD-TYPE" 
     TCGA-05-4390      TCGA-05-4396      TCGA-05-4397      TCGA-05-4398 
"RIMS4 WILD-TYPE" "RIMS4 WILD-TYPE" "RIMS4 WILD-TYPE" "RIMS4 WILD-TYPE" 
     TCGA-05-4402      TCGA-05-4405      TCGA-05-4415      TCGA-05-4417 
"RIMS4 WILD-TYPE" "RIMS4 WILD-TYPE" "RIMS4 WILD-TYPE" "RIMS4 WILD-TYPE" 
     TCGA-05-4418      TCGA-05-4420      TCGA-05-4424      TCGA-05-4426 
"RIMS4 WILD-TYPE" "RIMS4 WILD-TYPE" "RIMS4 WILD-TYPE" "RIMS4 WILD-TYPE" 
     TCGA-05-4427      TCGA-05-4430      TCGA-05-4432      TCGA-05-4433 
"RIMS4 WILD-TYPE" "RIMS4 WILD-TYPE" "RIMS4 WILD-TYPE" "RIMS4 WILD-TYPE" 
     TCGA-05-4434      TCGA-05-5420      TCGA-05-5423      TCGA-05-5425 
"RIMS4 WILD-TYPE" "RIMS4 WILD-TYPE" "RIMS4 WILD-TYPE" "RIMS4 WILD-TYPE" 
     TCGA-05-5429      TCGA-05-5715      TCGA-35-3615      TCGA-35-4122 
"RIMS4 WILD-TYPE" "RIMS4 WILD-TYPE" "RIMS4 WILD-TYPE" "RIMS4 WILD-TYPE" 
     TCGA-35-4123      TCGA-35-5375      TCGA-38-4625      TCGA-38-4626 
"RIMS4 WILD-TYPE" "RIMS4 WILD-TYPE" "RIMS4 WILD-TYPE" "RIMS4 WILD-TYPE" 
     TCGA-38-4627      TCGA-38-4628      TCGA-38-4629      TCGA-38-4630 
"RIMS4 WILD-TYPE" "RIMS4 WILD-TYPE" "RIMS4 WILD-TYPE" "RIMS4 WILD-TYPE" 
     TCGA-38-4631      TCGA-38-4632      TCGA-38-6178      TCGA-44-2655 
"RIMS4 WILD-TYPE" "RIMS4 WILD-TYPE" "RIMS4 WILD-TYPE" "RIMS4 WILD-TYPE" 
     TCGA-44-2656      TCGA-44-2657      TCGA-44-2659      TCGA-44-2661 
"RIMS4 WILD-TYPE" "RIMS4 WILD-TYPE" "RIMS4 WILD-TYPE" "RIMS4 WILD-TYPE" 
     TCGA-44-2662      TCGA-44-2665      TCGA-44-2666      TCGA-44-2668 
"RIMS4 WILD-TYPE" "RIMS4 WILD-TYPE" "RIMS4 WILD-TYPE" "RIMS4 WILD-TYPE" 
     TCGA-44-3396      TCGA-44-3398      TCGA-44-3918      TCGA-44-3919 
"RIMS4 WILD-TYPE" "RIMS4 WILD-TYPE"   "RIMS4 MUTATED" "RIMS4 WILD-TYPE" 
     TCGA-44-4112      TCGA-44-5643      TCGA-44-5645      TCGA-44-6144 
"RIMS4 WILD-TYPE" "RIMS4 WILD-TYPE" "RIMS4 WILD-TYPE" "RIMS4 WILD-TYPE" 
     TCGA-44-6145      TCGA-44-6146      TCGA-44-6147      TCGA-44-6148 
"RIMS4 WILD-TYPE" "RIMS4 WILD-TYPE" "RIMS4 WILD-TYPE" "RIMS4 WILD-TYPE" 
     TCGA-44-6774      TCGA-44-6775      TCGA-44-6776      TCGA-44-6777 
"RIMS4 WILD-TYPE" "RIMS4 WILD-TYPE" "RIMS4 WILD-TYPE" "RIMS4 WILD-TYPE" 
     TCGA-44-6778      TCGA-44-6779      TCGA-49-4486      TCGA-49-4487 
"RIMS4 WILD-TYPE" "RIMS4 WILD-TYPE" "RIMS4 WILD-TYPE" "RIMS4 WILD-TYPE" 
     TCGA-49-4488      TCGA-49-4490      TCGA-49-4494      TCGA-49-4501 
"RIMS4 WILD-TYPE" "RIMS4 WILD-TYPE"   "RIMS4 MUTATED" "RIMS4 WILD-TYPE" 
     TCGA-49-4505      TCGA-49-4506      TCGA-49-4507      TCGA-49-4510 
"RIMS4 WILD-TYPE" "RIMS4 WILD-TYPE" "RIMS4 WILD-TYPE" "RIMS4 WILD-TYPE" 
     TCGA-49-4512      TCGA-49-4514      TCGA-49-6742      TCGA-49-6743 
"RIMS4 WILD-TYPE" "RIMS4 WILD-TYPE" "RIMS4 WILD-TYPE" "RIMS4 WILD-TYPE" 
     TCGA-49-6744      TCGA-49-6745      TCGA-50-5044      TCGA-50-5045 
"RIMS4 WILD-TYPE" "RIMS4 WILD-TYPE" "RIMS4 WILD-TYPE" "RIMS4 WILD-TYPE" 
     TCGA-50-5049      TCGA-50-5051      TCGA-50-5055      TCGA-50-5066 
"RIMS4 WILD-TYPE" "RIMS4 WILD-TYPE" "RIMS4 WILD-TYPE"   "RIMS4 MUTATED" 
     TCGA-50-5068      TCGA-50-5072      TCGA-50-5930      TCGA-50-5931 
"RIMS4 WILD-TYPE" "RIMS4 WILD-TYPE" "RIMS4 WILD-TYPE" "RIMS4 WILD-TYPE" 
     TCGA-50-5932      TCGA-50-5933      TCGA-50-5935      TCGA-50-5936 
"RIMS4 WILD-TYPE" "RIMS4 WILD-TYPE" "RIMS4 WILD-TYPE" "RIMS4 WILD-TYPE" 
     TCGA-50-5939      TCGA-50-5941      TCGA-50-5942      TCGA-50-5944 
"RIMS4 WILD-TYPE" "RIMS4 WILD-TYPE" "RIMS4 WILD-TYPE" "RIMS4 WILD-TYPE" 
     TCGA-50-5946      TCGA-50-6590      TCGA-50-6591      TCGA-50-6592 
"RIMS4 WILD-TYPE" "RIMS4 WILD-TYPE" "RIMS4 WILD-TYPE" "RIMS4 WILD-TYPE" 
     TCGA-50-6593      TCGA-50-6594      TCGA-50-6595      TCGA-50-6597 
"RIMS4 WILD-TYPE" "RIMS4 WILD-TYPE" "RIMS4 WILD-TYPE" "RIMS4 WILD-TYPE" 
     TCGA-55-1592      TCGA-55-1594      TCGA-55-1595      TCGA-55-1596 
"RIMS4 WILD-TYPE" "RIMS4 WILD-TYPE" "RIMS4 WILD-TYPE" "RIMS4 WILD-TYPE" 
     TCGA-55-5899      TCGA-55-6543      TCGA-55-6642      TCGA-55-6712 
"RIMS4 WILD-TYPE" "RIMS4 WILD-TYPE" "RIMS4 WILD-TYPE" "RIMS4 WILD-TYPE" 
     TCGA-64-1676      TCGA-64-1677      TCGA-64-1678      TCGA-64-1680 
"RIMS4 WILD-TYPE" "RIMS4 WILD-TYPE" "RIMS4 WILD-TYPE" "RIMS4 WILD-TYPE" 
     TCGA-64-5774      TCGA-64-5775      TCGA-64-5778      TCGA-64-5779 
"RIMS4 WILD-TYPE" "RIMS4 WILD-TYPE" "RIMS4 WILD-TYPE" "RIMS4 WILD-TYPE" 
     TCGA-64-5781      TCGA-64-5815      TCGA-67-3770      TCGA-67-3771 
"RIMS4 WILD-TYPE"   "RIMS4 MUTATED" "RIMS4 WILD-TYPE" "RIMS4 WILD-TYPE" 
     TCGA-67-3772      TCGA-67-3773      TCGA-67-3774      TCGA-67-6215 
"RIMS4 WILD-TYPE" "RIMS4 WILD-TYPE" "RIMS4 WILD-TYPE" "RIMS4 WILD-TYPE" 
     TCGA-67-6216      TCGA-67-6217      TCGA-71-6725      TCGA-73-4658 
"RIMS4 WILD-TYPE" "RIMS4 WILD-TYPE" "RIMS4 WILD-TYPE" "RIMS4 WILD-TYPE" 
     TCGA-73-4659      TCGA-73-4662      TCGA-73-4666      TCGA-73-4668 
"RIMS4 WILD-TYPE" "RIMS4 WILD-TYPE"   "RIMS4 MUTATED" "RIMS4 WILD-TYPE" 
     TCGA-73-4670      TCGA-73-4675      TCGA-73-4676      TCGA-73-4677 
"RIMS4 WILD-TYPE" "RIMS4 WILD-TYPE" "RIMS4 WILD-TYPE" "RIMS4 WILD-TYPE" 
     TCGA-91-6828      TCGA-91-6829      TCGA-91-6831      TCGA-91-6835 
"RIMS4 WILD-TYPE" "RIMS4 WILD-TYPE" "RIMS4 WILD-TYPE" "RIMS4 WILD-TYPE" 
     TCGA-91-6836 
"RIMS4 WILD-TYPE" 
     TCGA-05-4249      TCGA-05-4250      TCGA-05-4382      TCGA-05-4384 
"RIMS4 WILD-TYPE" "RIMS4 WILD-TYPE"   "RIMS4 MUTATED" "RIMS4 WILD-TYPE" 
     TCGA-05-4390      TCGA-05-4396      TCGA-05-4397      TCGA-05-4398 
"RIMS4 WILD-TYPE" "RIMS4 WILD-TYPE" "RIMS4 WILD-TYPE" "RIMS4 WILD-TYPE" 
     TCGA-05-4402      TCGA-05-4405      TCGA-05-4415      TCGA-05-4417 
"RIMS4 WILD-TYPE" "RIMS4 WILD-TYPE" "RIMS4 WILD-TYPE" "RIMS4 WILD-TYPE" 
     TCGA-05-4418      TCGA-05-4420      TCGA-05-4424      TCGA-05-4426 
"RIMS4 WILD-TYPE" "RIMS4 WILD-TYPE" "RIMS4 WILD-TYPE" "RIMS4 WILD-TYPE" 
     TCGA-05-4427      TCGA-05-4430      TCGA-05-4432      TCGA-05-4433 
"RIMS4 WILD-TYPE" "RIMS4 WILD-TYPE" "RIMS4 WILD-TYPE" "RIMS4 WILD-TYPE" 
     TCGA-05-4434      TCGA-05-5420      TCGA-05-5423      TCGA-05-5425 
"RIMS4 WILD-TYPE" "RIMS4 WILD-TYPE" "RIMS4 WILD-TYPE" "RIMS4 WILD-TYPE" 
     TCGA-05-5429      TCGA-05-5715      TCGA-35-3615      TCGA-35-4122 
"RIMS4 WILD-TYPE" "RIMS4 WILD-TYPE" "RIMS4 WILD-TYPE" "RIMS4 WILD-TYPE" 
     TCGA-35-4123      TCGA-35-5375      TCGA-38-4625      TCGA-38-4626 
"RIMS4 WILD-TYPE" "RIMS4 WILD-TYPE" "RIMS4 WILD-TYPE" "RIMS4 WILD-TYPE" 
     TCGA-38-4627      TCGA-38-4628      TCGA-38-4629      TCGA-38-4630 
"RIMS4 WILD-TYPE" "RIMS4 WILD-TYPE" "RIMS4 WILD-TYPE" "RIMS4 WILD-TYPE" 
     TCGA-38-4631      TCGA-38-4632      TCGA-38-6178      TCGA-44-2655 
"RIMS4 WILD-TYPE" "RIMS4 WILD-TYPE" "RIMS4 WILD-TYPE" "RIMS4 WILD-TYPE" 
     TCGA-44-2656      TCGA-44-2657      TCGA-44-2659      TCGA-44-2661 
"RIMS4 WILD-TYPE" "RIMS4 WILD-TYPE" "RIMS4 WILD-TYPE" "RIMS4 WILD-TYPE" 
     TCGA-44-2662      TCGA-44-2665      TCGA-44-2666      TCGA-44-2668 
"RIMS4 WILD-TYPE" "RIMS4 WILD-TYPE" "RIMS4 WILD-TYPE" "RIMS4 WILD-TYPE" 
     TCGA-44-3396      TCGA-44-3398      TCGA-44-3918      TCGA-44-3919 
"RIMS4 WILD-TYPE" "RIMS4 WILD-TYPE"   "RIMS4 MUTATED" "RIMS4 WILD-TYPE" 
     TCGA-44-4112      TCGA-44-5643      TCGA-44-5645      TCGA-44-6144 
"RIMS4 WILD-TYPE" "RIMS4 WILD-TYPE" "RIMS4 WILD-TYPE" "RIMS4 WILD-TYPE" 
     TCGA-44-6145      TCGA-44-6146      TCGA-44-6147      TCGA-44-6148 
"RIMS4 WILD-TYPE" "RIMS4 WILD-TYPE" "RIMS4 WILD-TYPE" "RIMS4 WILD-TYPE" 
     TCGA-44-6774      TCGA-44-6775      TCGA-44-6776      TCGA-44-6777 
"RIMS4 WILD-TYPE" "RIMS4 WILD-TYPE" "RIMS4 WILD-TYPE" "RIMS4 WILD-TYPE" 
     TCGA-44-6778      TCGA-44-6779      TCGA-49-4486      TCGA-49-4487 
"RIMS4 WILD-TYPE" "RIMS4 WILD-TYPE" "RIMS4 WILD-TYPE" "RIMS4 WILD-TYPE" 
     TCGA-49-4488      TCGA-49-4490      TCGA-49-4494      TCGA-49-4501 
"RIMS4 WILD-TYPE" "RIMS4 WILD-TYPE"   "RIMS4 MUTATED" "RIMS4 WILD-TYPE" 
     TCGA-49-4505      TCGA-49-4506      TCGA-49-4507      TCGA-49-4510 
"RIMS4 WILD-TYPE" "RIMS4 WILD-TYPE" "RIMS4 WILD-TYPE" "RIMS4 WILD-TYPE" 
     TCGA-49-4512      TCGA-49-4514      TCGA-49-6742      TCGA-49-6743 
"RIMS4 WILD-TYPE" "RIMS4 WILD-TYPE" "RIMS4 WILD-TYPE" "RIMS4 WILD-TYPE" 
     TCGA-49-6744      TCGA-49-6745      TCGA-50-5044      TCGA-50-5045 
"RIMS4 WILD-TYPE" "RIMS4 WILD-TYPE" "RIMS4 WILD-TYPE" "RIMS4 WILD-TYPE" 
     TCGA-50-5049      TCGA-50-5051      TCGA-50-5055      TCGA-50-5066 
"RIMS4 WILD-TYPE" "RIMS4 WILD-TYPE" "RIMS4 WILD-TYPE"   "RIMS4 MUTATED" 
     TCGA-50-5068      TCGA-50-5072      TCGA-50-5930      TCGA-50-5931 
"RIMS4 WILD-TYPE" "RIMS4 WILD-TYPE" "RIMS4 WILD-TYPE" "RIMS4 WILD-TYPE" 
     TCGA-50-5932      TCGA-50-5933      TCGA-50-5935      TCGA-50-5936 
"RIMS4 WILD-TYPE" "RIMS4 WILD-TYPE" "RIMS4 WILD-TYPE" "RIMS4 WILD-TYPE" 
     TCGA-50-5939      TCGA-50-5941      TCGA-50-5942      TCGA-50-5944 
"RIMS4 WILD-TYPE" "RIMS4 WILD-TYPE" "RIMS4 WILD-TYPE" "RIMS4 WILD-TYPE" 
     TCGA-50-5946      TCGA-50-6590      TCGA-50-6591      TCGA-50-6592 
"RIMS4 WILD-TYPE" "RIMS4 WILD-TYPE" "RIMS4 WILD-TYPE" "RIMS4 WILD-TYPE" 
     TCGA-50-6593      TCGA-50-6594      TCGA-50-6595      TCGA-50-6597 
"RIMS4 WILD-TYPE" "RIMS4 WILD-TYPE" "RIMS4 WILD-TYPE" "RIMS4 WILD-TYPE" 
     TCGA-55-1592      TCGA-55-1594      TCGA-55-1595      TCGA-55-1596 
"RIMS4 WILD-TYPE" "RIMS4 WILD-TYPE" "RIMS4 WILD-TYPE" "RIMS4 WILD-TYPE" 
     TCGA-55-5899      TCGA-55-6543      TCGA-55-6642      TCGA-55-6712 
"RIMS4 WILD-TYPE" "RIMS4 WILD-TYPE" "RIMS4 WILD-TYPE" "RIMS4 WILD-TYPE" 
     TCGA-64-1676      TCGA-64-1677      TCGA-64-1678      TCGA-64-1680 
"RIMS4 WILD-TYPE" "RIMS4 WILD-TYPE" "RIMS4 WILD-TYPE" "RIMS4 WILD-TYPE" 
     TCGA-64-5774      TCGA-64-5775      TCGA-64-5778      TCGA-64-5779 
"RIMS4 WILD-TYPE" "RIMS4 WILD-TYPE" "RIMS4 WILD-TYPE" "RIMS4 WILD-TYPE" 
     TCGA-64-5781      TCGA-64-5815      TCGA-67-3770      TCGA-67-3771 
"RIMS4 WILD-TYPE"   "RIMS4 MUTATED" "RIMS4 WILD-TYPE" "RIMS4 WILD-TYPE" 
     TCGA-67-3772      TCGA-67-3773      TCGA-67-3774      TCGA-67-6215 
"RIMS4 WILD-TYPE" "RIMS4 WILD-TYPE" "RIMS4 WILD-TYPE" "RIMS4 WILD-TYPE" 
     TCGA-67-6216      TCGA-67-6217      TCGA-71-6725      TCGA-73-4658 
"RIMS4 WILD-TYPE" "RIMS4 WILD-TYPE" "RIMS4 WILD-TYPE" "RIMS4 WILD-TYPE" 
     TCGA-73-4659      TCGA-73-4662      TCGA-73-4666      TCGA-73-4668 
"RIMS4 WILD-TYPE" "RIMS4 WILD-TYPE"   "RIMS4 MUTATED" "RIMS4 WILD-TYPE" 
     TCGA-73-4670      TCGA-73-4675      TCGA-73-4676      TCGA-73-4677 
"RIMS4 WILD-TYPE" "RIMS4 WILD-TYPE" "RIMS4 WILD-TYPE" "RIMS4 WILD-TYPE" 
     TCGA-91-6828      TCGA-91-6829      TCGA-91-6831      TCGA-91-6835 
"RIMS4 WILD-TYPE" "RIMS4 WILD-TYPE" "RIMS4 WILD-TYPE" "RIMS4 WILD-TYPE" 
     TCGA-91-6836 
"RIMS4 WILD-TYPE" 
     TCGA-05-4249      TCGA-05-4250      TCGA-05-4382      TCGA-05-4384 
"RIMS4 WILD-TYPE" "RIMS4 WILD-TYPE"   "RIMS4 MUTATED" "RIMS4 WILD-TYPE" 
     TCGA-05-4390      TCGA-05-4396      TCGA-05-4397      TCGA-05-4398 
"RIMS4 WILD-TYPE" "RIMS4 WILD-TYPE" "RIMS4 WILD-TYPE" "RIMS4 WILD-TYPE" 
     TCGA-05-4402      TCGA-05-4405      TCGA-05-4415      TCGA-05-4417 
"RIMS4 WILD-TYPE" "RIMS4 WILD-TYPE" "RIMS4 WILD-TYPE" "RIMS4 WILD-TYPE" 
     TCGA-05-4418      TCGA-05-4420      TCGA-05-4424      TCGA-05-4426 
"RIMS4 WILD-TYPE" "RIMS4 WILD-TYPE" "RIMS4 WILD-TYPE" "RIMS4 WILD-TYPE" 
     TCGA-05-4427      TCGA-05-4430      TCGA-05-4432      TCGA-05-4433 
"RIMS4 WILD-TYPE" "RIMS4 WILD-TYPE" "RIMS4 WILD-TYPE" "RIMS4 WILD-TYPE" 
     TCGA-05-4434      TCGA-05-5420      TCGA-05-5423      TCGA-05-5425 
"RIMS4 WILD-TYPE" "RIMS4 WILD-TYPE" "RIMS4 WILD-TYPE" "RIMS4 WILD-TYPE" 
     TCGA-05-5429      TCGA-05-5715      TCGA-35-3615      TCGA-35-4122 
"RIMS4 WILD-TYPE" "RIMS4 WILD-TYPE" "RIMS4 WILD-TYPE" "RIMS4 WILD-TYPE" 
     TCGA-35-4123      TCGA-35-5375      TCGA-38-4625      TCGA-38-4626 
"RIMS4 WILD-TYPE" "RIMS4 WILD-TYPE" "RIMS4 WILD-TYPE" "RIMS4 WILD-TYPE" 
     TCGA-38-4627      TCGA-38-4628      TCGA-38-4629      TCGA-38-4630 
"RIMS4 WILD-TYPE" "RIMS4 WILD-TYPE" "RIMS4 WILD-TYPE" "RIMS4 WILD-TYPE" 
     TCGA-38-4631      TCGA-38-4632      TCGA-38-6178      TCGA-44-2655 
"RIMS4 WILD-TYPE" "RIMS4 WILD-TYPE" "RIMS4 WILD-TYPE" "RIMS4 WILD-TYPE" 
     TCGA-44-2656      TCGA-44-2657      TCGA-44-2659      TCGA-44-2661 
"RIMS4 WILD-TYPE" "RIMS4 WILD-TYPE" "RIMS4 WILD-TYPE" "RIMS4 WILD-TYPE" 
     TCGA-44-2662      TCGA-44-2665      TCGA-44-2666      TCGA-44-2668 
"RIMS4 WILD-TYPE" "RIMS4 WILD-TYPE" "RIMS4 WILD-TYPE" "RIMS4 WILD-TYPE" 
     TCGA-44-3396      TCGA-44-3398      TCGA-44-3918      TCGA-44-3919 
"RIMS4 WILD-TYPE" "RIMS4 WILD-TYPE"   "RIMS4 MUTATED" "RIMS4 WILD-TYPE" 
     TCGA-44-4112      TCGA-44-5643      TCGA-44-5645      TCGA-44-6144 
"RIMS4 WILD-TYPE" "RIMS4 WILD-TYPE" "RIMS4 WILD-TYPE" "RIMS4 WILD-TYPE" 
     TCGA-44-6145      TCGA-44-6146      TCGA-44-6147      TCGA-44-6148 
"RIMS4 WILD-TYPE" "RIMS4 WILD-TYPE" "RIMS4 WILD-TYPE" "RIMS4 WILD-TYPE" 
     TCGA-44-6774      TCGA-44-6775      TCGA-44-6776      TCGA-44-6777 
"RIMS4 WILD-TYPE" "RIMS4 WILD-TYPE" "RIMS4 WILD-TYPE" "RIMS4 WILD-TYPE" 
     TCGA-44-6778      TCGA-44-6779      TCGA-49-4486      TCGA-49-4487 
"RIMS4 WILD-TYPE" "RIMS4 WILD-TYPE" "RIMS4 WILD-TYPE" "RIMS4 WILD-TYPE" 
     TCGA-49-4488      TCGA-49-4490      TCGA-49-4494      TCGA-49-4501 
"RIMS4 WILD-TYPE" "RIMS4 WILD-TYPE"   "RIMS4 MUTATED" "RIMS4 WILD-TYPE" 
     TCGA-49-4505      TCGA-49-4506      TCGA-49-4507      TCGA-49-4510 
"RIMS4 WILD-TYPE" "RIMS4 WILD-TYPE" "RIMS4 WILD-TYPE" "RIMS4 WILD-TYPE" 
     TCGA-49-4512      TCGA-49-4514      TCGA-49-6742      TCGA-49-6743 
"RIMS4 WILD-TYPE" "RIMS4 WILD-TYPE" "RIMS4 WILD-TYPE" "RIMS4 WILD-TYPE" 
     TCGA-49-6744      TCGA-49-6745      TCGA-50-5044      TCGA-50-5045 
"RIMS4 WILD-TYPE" "RIMS4 WILD-TYPE" "RIMS4 WILD-TYPE" "RIMS4 WILD-TYPE" 
     TCGA-50-5049      TCGA-50-5051      TCGA-50-5055      TCGA-50-5066 
"RIMS4 WILD-TYPE" "RIMS4 WILD-TYPE" "RIMS4 WILD-TYPE"   "RIMS4 MUTATED" 
     TCGA-50-5068      TCGA-50-5072      TCGA-50-5930      TCGA-50-5931 
"RIMS4 WILD-TYPE" "RIMS4 WILD-TYPE" "RIMS4 WILD-TYPE" "RIMS4 WILD-TYPE" 
     TCGA-50-5932      TCGA-50-5933      TCGA-50-5935      TCGA-50-5936 
"RIMS4 WILD-TYPE" "RIMS4 WILD-TYPE" "RIMS4 WILD-TYPE" "RIMS4 WILD-TYPE" 
     TCGA-50-5939      TCGA-50-5941      TCGA-50-5942      TCGA-50-5944 
"RIMS4 WILD-TYPE" "RIMS4 WILD-TYPE" "RIMS4 WILD-TYPE" "RIMS4 WILD-TYPE" 
     TCGA-50-5946      TCGA-50-6590      TCGA-50-6591      TCGA-50-6592 
"RIMS4 WILD-TYPE" "RIMS4 WILD-TYPE" "RIMS4 WILD-TYPE" "RIMS4 WILD-TYPE" 
     TCGA-50-6593      TCGA-50-6594      TCGA-50-6595      TCGA-50-6597 
"RIMS4 WILD-TYPE" "RIMS4 WILD-TYPE" "RIMS4 WILD-TYPE" "RIMS4 WILD-TYPE" 
     TCGA-55-1592      TCGA-55-1594      TCGA-55-1595      TCGA-55-1596 
"RIMS4 WILD-TYPE" "RIMS4 WILD-TYPE" "RIMS4 WILD-TYPE" "RIMS4 WILD-TYPE" 
     TCGA-55-5899      TCGA-55-6543      TCGA-55-6642      TCGA-55-6712 
"RIMS4 WILD-TYPE" "RIMS4 WILD-TYPE" "RIMS4 WILD-TYPE" "RIMS4 WILD-TYPE" 
     TCGA-64-1676      TCGA-64-1677      TCGA-64-1678      TCGA-64-1680 
"RIMS4 WILD-TYPE" "RIMS4 WILD-TYPE" "RIMS4 WILD-TYPE" "RIMS4 WILD-TYPE" 
     TCGA-64-5774      TCGA-64-5775      TCGA-64-5778      TCGA-64-5779 
"RIMS4 WILD-TYPE" "RIMS4 WILD-TYPE" "RIMS4 WILD-TYPE" "RIMS4 WILD-TYPE" 
     TCGA-64-5781      TCGA-64-5815      TCGA-67-3770      TCGA-67-3771 
"RIMS4 WILD-TYPE"   "RIMS4 MUTATED" "RIMS4 WILD-TYPE" "RIMS4 WILD-TYPE" 
     TCGA-67-3772      TCGA-67-3773      TCGA-67-3774      TCGA-67-6215 
"RIMS4 WILD-TYPE" "RIMS4 WILD-TYPE" "RIMS4 WILD-TYPE" "RIMS4 WILD-TYPE" 
     TCGA-67-6216      TCGA-67-6217      TCGA-71-6725      TCGA-73-4658 
"RIMS4 WILD-TYPE" "RIMS4 WILD-TYPE" "RIMS4 WILD-TYPE" "RIMS4 WILD-TYPE" 
     TCGA-73-4659      TCGA-73-4662      TCGA-73-4666      TCGA-73-4668 
"RIMS4 WILD-TYPE" "RIMS4 WILD-TYPE"   "RIMS4 MUTATED" "RIMS4 WILD-TYPE" 
     TCGA-73-4670      TCGA-73-4675      TCGA-73-4676      TCGA-73-4677 
"RIMS4 WILD-TYPE" "RIMS4 WILD-TYPE" "RIMS4 WILD-TYPE" "RIMS4 WILD-TYPE" 
     TCGA-91-6828      TCGA-91-6829      TCGA-91-6831      TCGA-91-6835 
"RIMS4 WILD-TYPE" "RIMS4 WILD-TYPE" "RIMS4 WILD-TYPE" "RIMS4 WILD-TYPE" 
     TCGA-91-6836 
"RIMS4 WILD-TYPE" 
[1] "hr=" "1.3"
D167V2, continuous
D167V3, binary
[1] "tbl2"
                 cls
clus              [,1] [,2]
  RIMS4 MUTATED      2    5
  RIMS4 WILD-TYPE   91   74
        clus
vv       RIMS4 MUTATED RIMS4 WILD-TYPE
  FEMALE             2              91
  MALE               5              74
D167V4, continuous
[1] "Remove cluster labels:" "RIMS4 MUTATED"         
clus
  RIMS4 MUTATED RIMS4 WILD-TYPE 
              1              11 
     TCGA-35-4122      TCGA-35-4123      TCGA-35-5375      TCGA-64-1677 
"RIMS4 WILD-TYPE" "RIMS4 WILD-TYPE" "RIMS4 WILD-TYPE" "RIMS4 WILD-TYPE" 
     TCGA-64-5778      TCGA-71-6725      TCGA-73-4659      TCGA-73-4662 
"RIMS4 WILD-TYPE" "RIMS4 WILD-TYPE" "RIMS4 WILD-TYPE" "RIMS4 WILD-TYPE" 
     TCGA-73-4668      TCGA-73-4676      TCGA-75-5122 
"RIMS4 WILD-TYPE" "RIMS4 WILD-TYPE" "RIMS4 WILD-TYPE" 
D167V5, multiclass
D167V6, multiclass
    clus
vv   RIMS4 MUTATED RIMS4 WILD-TYPE
  T1             2              39
  T2             4             104
  T3             1              13
  T4             0               8
D167V7, multiclass
       clus
vv      RIMS4 MUTATED RIMS4 WILD-TYPE
  N0                5              90
  N1                1              36
  N2+N3             1              34
D167V8, multiclass
    clus
vv   RIMS4 MUTATED RIMS4 WILD-TYPE
  M0             6             131
  M1             1               8
  MX             0              22
D167V9, multiclass
     clus
vv    RIMS4 MUTATED RIMS4 WILD-TYPE
  I               4              84
  II              1              32
  III             1              38
  IV              1               8
D167V10, binary
[1] "tbl2"
                 cls
clus              [,1] [,2]
  RIMS4 MUTATED      1    6
  RIMS4 WILD-TYPE   15  150
     clus
vv    RIMS4 MUTATED RIMS4 WILD-TYPE
  NO              1              15
  YES             6             150
D167V11, continuous
D167V12, continuous
D167V13, multiclass
                                             clus
vv                                            RIMS4 MUTATED RIMS4 WILD-TYPE
  CURRENT REFORMED SMOKER FOR < OR = 15 YEARS             3              59
  CURRENT REFORMED SMOKER FOR > 15 YEARS                  3              43
  CURRENT SMOKER                                          0              28
  LIFELONG NON-SMOKER                                     1              23
D167V14, continuous

Clustering(168) Variable = TCTEX1D1 MUTATION ANALYSIS
D168V1, survival
                    sevent
clus2                 0  1
  TCTEX1D1 MUTATED    3  2
  TCTEX1D1 WILD-TYPE 96 48
  TCTEX1D1 MUTATED TCTEX1D1 WILD-TYPE 
                 5                144 
  TCTEX1D1 MUTATED TCTEX1D1 WILD-TYPE 
                 2                 48 
$`TCTEX1D1 MUTATED`
TCGA-05-4249 TCGA-44-3918 TCGA-64-1676 TCGA-64-5775 TCGA-91-6829 
       38.07         6.44        56.81         0.10        41.33 

$`TCTEX1D1 WILD-TYPE`
TCGA-05-4250 TCGA-05-4382 TCGA-05-4384 TCGA-05-4390 TCGA-05-4396 TCGA-05-4397 
        3.98        19.92        14.01        37.02         9.96        24.03 
TCGA-05-4398 TCGA-05-4402 TCGA-05-4405 TCGA-05-4415 TCGA-05-4417 TCGA-05-4418 
       47.05         8.02        20.05         2.96        14.93         8.98 
TCGA-05-4420 TCGA-05-4424 TCGA-05-4426 TCGA-05-4427 TCGA-05-4430 TCGA-05-4432 
       29.95        30.02        26.01        26.01        25.02        25.02 
TCGA-05-4433 TCGA-05-4434 TCGA-05-5420 TCGA-05-5423 TCGA-05-5425 TCGA-05-5429 
       24.00        15.02         1.02         4.96         2.96         0.99 
TCGA-05-5715 TCGA-35-3615 TCGA-35-4122 TCGA-35-4123 TCGA-35-5375 TCGA-38-4625 
        2.04         0.46         7.36         5.95         8.68        47.61 
TCGA-38-4626 TCGA-38-4627 TCGA-38-4628 TCGA-38-4629 TCGA-38-4630 TCGA-38-4631 
       85.32        37.71        49.02        28.37        35.28        11.64 
TCGA-38-4632 TCGA-38-6178 TCGA-44-2655 TCGA-44-2656 TCGA-44-2657 TCGA-44-2659 
       44.61         5.19        18.87        19.10        13.15        17.39 
TCGA-44-2661 TCGA-44-2662 TCGA-44-2665 TCGA-44-2666 TCGA-44-2668 TCGA-44-3396 
        3.39        15.78        13.15         3.19         8.09        10.22 
TCGA-44-3398 TCGA-44-3919 TCGA-44-4112 TCGA-44-5643 TCGA-44-5645 TCGA-44-6144 
        8.32         6.21         4.60         3.48         6.84         0.30 
TCGA-44-6145 TCGA-44-6146 TCGA-44-6147 TCGA-44-6148 TCGA-44-6774 TCGA-44-6775 
        3.35         9.93         7.76         3.12         5.42         2.70 
TCGA-44-6776 TCGA-44-6777 TCGA-44-6778 TCGA-44-6779 TCGA-49-4486 TCGA-49-4487 
       63.72        32.45        36.49        16.41        76.21        28.11 
TCGA-49-4488 TCGA-49-4490 TCGA-49-4494 TCGA-49-4501 TCGA-49-4505 TCGA-49-4506 
       28.57        12.66        35.54        46.72        14.07        32.84 
TCGA-49-4507 TCGA-49-4510 TCGA-49-4512 TCGA-49-4514 TCGA-49-6742 TCGA-49-6743 
        8.81        29.46        29.75        43.20        15.02        12.13 
TCGA-49-6744 TCGA-49-6745 TCGA-50-5044 TCGA-50-5045 TCGA-50-5049 TCGA-50-5051 
       12.99         4.93        20.48        71.47        48.82        14.96 
TCGA-50-5055 TCGA-50-5066 TCGA-50-5068 TCGA-50-5072 TCGA-50-5930 TCGA-50-5931 
       25.81         9.76        49.28         8.05         9.27         8.78 
TCGA-50-5932 TCGA-50-5933 TCGA-50-5935 TCGA-50-5936 TCGA-50-5939 TCGA-50-5941 
       35.87        77.88        21.47         8.45        15.12         9.37 
TCGA-50-5942 TCGA-50-5944 TCGA-50-5946 TCGA-50-6590 TCGA-50-6591 TCGA-50-6592 
        4.44        12.26        11.47        42.31         3.88        25.51 
TCGA-50-6593 TCGA-50-6594 TCGA-50-6595 TCGA-50-6597 TCGA-55-1592 TCGA-55-1594 
       11.05        12.16         6.21        33.37        23.05        38.73 
TCGA-55-1595 TCGA-55-1596 TCGA-55-5899 TCGA-55-6543 TCGA-55-6642 TCGA-55-6712 
       48.62        45.17         2.86         0.07        32.61         0.79 
TCGA-64-1677 TCGA-64-1678 TCGA-64-1680 TCGA-64-5774 TCGA-64-5778 TCGA-64-5779 
       20.65        39.09        37.02        83.84        30.44        16.67 
TCGA-64-5781 TCGA-64-5815 TCGA-67-3770 TCGA-67-3771 TCGA-67-3772 TCGA-67-3773 
       39.52         7.33         0.99         1.97         0.59         2.04 
TCGA-67-3774 TCGA-67-6215 TCGA-67-6216 TCGA-67-6217 TCGA-71-6725 TCGA-73-4658 
        0.59         0.89         0.69        13.87         2.01        52.57 
TCGA-73-4659 TCGA-73-4662 TCGA-73-4666 TCGA-73-4668 TCGA-73-4670 TCGA-73-4675 
       23.38        29.95        20.28        15.35         0.46         1.32 
TCGA-73-4676 TCGA-73-4677 TCGA-91-6828 TCGA-91-6831 TCGA-91-6835 TCGA-91-6836 
        4.01         1.25         1.22         1.28         1.15         0.36 

  TCTEX1D1 MUTATED TCTEX1D1 WILD-TYPE 
              0.10               0.07 
  TCTEX1D1 MUTATED TCTEX1D1 WILD-TYPE 
             56.81              85.32 
  TCTEX1D1 MUTATED TCTEX1D1 WILD-TYPE 
             38.07              13.51 
[1] "0.1 - 56.8 (38.1)" "0.1 - 85.3 (13.5)"
        TCGA-05-4249         TCGA-05-4250         TCGA-05-4382 
  "TCTEX1D1 MUTATED" "TCTEX1D1 WILD-TYPE" "TCTEX1D1 WILD-TYPE" 
        TCGA-05-4384         TCGA-05-4390         TCGA-05-4396 
"TCTEX1D1 WILD-TYPE" "TCTEX1D1 WILD-TYPE" "TCTEX1D1 WILD-TYPE" 
        TCGA-05-4397         TCGA-05-4398         TCGA-05-4402 
"TCTEX1D1 WILD-TYPE" "TCTEX1D1 WILD-TYPE" "TCTEX1D1 WILD-TYPE" 
        TCGA-05-4405         TCGA-05-4415         TCGA-05-4417 
"TCTEX1D1 WILD-TYPE" "TCTEX1D1 WILD-TYPE" "TCTEX1D1 WILD-TYPE" 
        TCGA-05-4418         TCGA-05-4420         TCGA-05-4424 
"TCTEX1D1 WILD-TYPE" "TCTEX1D1 WILD-TYPE" "TCTEX1D1 WILD-TYPE" 
        TCGA-05-4426         TCGA-05-4427         TCGA-05-4430 
"TCTEX1D1 WILD-TYPE" "TCTEX1D1 WILD-TYPE" "TCTEX1D1 WILD-TYPE" 
        TCGA-05-4432         TCGA-05-4433         TCGA-05-4434 
"TCTEX1D1 WILD-TYPE" "TCTEX1D1 WILD-TYPE" "TCTEX1D1 WILD-TYPE" 
        TCGA-05-5420         TCGA-05-5423         TCGA-05-5425 
"TCTEX1D1 WILD-TYPE" "TCTEX1D1 WILD-TYPE" "TCTEX1D1 WILD-TYPE" 
        TCGA-05-5429         TCGA-05-5715         TCGA-35-3615 
"TCTEX1D1 WILD-TYPE" "TCTEX1D1 WILD-TYPE" "TCTEX1D1 WILD-TYPE" 
        TCGA-35-4122         TCGA-35-4123         TCGA-35-5375 
"TCTEX1D1 WILD-TYPE" "TCTEX1D1 WILD-TYPE" "TCTEX1D1 WILD-TYPE" 
        TCGA-38-4625         TCGA-38-4626         TCGA-38-4627 
"TCTEX1D1 WILD-TYPE" "TCTEX1D1 WILD-TYPE" "TCTEX1D1 WILD-TYPE" 
        TCGA-38-4628         TCGA-38-4629         TCGA-38-4630 
"TCTEX1D1 WILD-TYPE" "TCTEX1D1 WILD-TYPE" "TCTEX1D1 WILD-TYPE" 
        TCGA-38-4631         TCGA-38-4632         TCGA-38-6178 
"TCTEX1D1 WILD-TYPE" "TCTEX1D1 WILD-TYPE" "TCTEX1D1 WILD-TYPE" 
        TCGA-44-2655         TCGA-44-2656         TCGA-44-2657 
"TCTEX1D1 WILD-TYPE" "TCTEX1D1 WILD-TYPE" "TCTEX1D1 WILD-TYPE" 
        TCGA-44-2659         TCGA-44-2661         TCGA-44-2662 
"TCTEX1D1 WILD-TYPE" "TCTEX1D1 WILD-TYPE" "TCTEX1D1 WILD-TYPE" 
        TCGA-44-2665         TCGA-44-2666         TCGA-44-2668 
"TCTEX1D1 WILD-TYPE" "TCTEX1D1 WILD-TYPE" "TCTEX1D1 WILD-TYPE" 
        TCGA-44-3396         TCGA-44-3398         TCGA-44-3918 
"TCTEX1D1 WILD-TYPE" "TCTEX1D1 WILD-TYPE"   "TCTEX1D1 MUTATED" 
        TCGA-44-3919         TCGA-44-4112         TCGA-44-5643 
"TCTEX1D1 WILD-TYPE" "TCTEX1D1 WILD-TYPE" "TCTEX1D1 WILD-TYPE" 
        TCGA-44-5645         TCGA-44-6144         TCGA-44-6145 
"TCTEX1D1 WILD-TYPE" "TCTEX1D1 WILD-TYPE" "TCTEX1D1 WILD-TYPE" 
        TCGA-44-6146         TCGA-44-6147         TCGA-44-6148 
"TCTEX1D1 WILD-TYPE" "TCTEX1D1 WILD-TYPE" "TCTEX1D1 WILD-TYPE" 
        TCGA-44-6774         TCGA-44-6775         TCGA-44-6776 
"TCTEX1D1 WILD-TYPE" "TCTEX1D1 WILD-TYPE" "TCTEX1D1 WILD-TYPE" 
        TCGA-44-6777         TCGA-44-6778         TCGA-44-6779 
"TCTEX1D1 WILD-TYPE" "TCTEX1D1 WILD-TYPE" "TCTEX1D1 WILD-TYPE" 
        TCGA-49-4486         TCGA-49-4487         TCGA-49-4488 
"TCTEX1D1 WILD-TYPE" "TCTEX1D1 WILD-TYPE" "TCTEX1D1 WILD-TYPE" 
        TCGA-49-4490         TCGA-49-4494         TCGA-49-4501 
"TCTEX1D1 WILD-TYPE" "TCTEX1D1 WILD-TYPE" "TCTEX1D1 WILD-TYPE" 
        TCGA-49-4505         TCGA-49-4506         TCGA-49-4507 
"TCTEX1D1 WILD-TYPE" "TCTEX1D1 WILD-TYPE" "TCTEX1D1 WILD-TYPE" 
        TCGA-49-4510         TCGA-49-4512         TCGA-49-4514 
"TCTEX1D1 WILD-TYPE" "TCTEX1D1 WILD-TYPE" "TCTEX1D1 WILD-TYPE" 
        TCGA-49-6742         TCGA-49-6743         TCGA-49-6744 
"TCTEX1D1 WILD-TYPE" "TCTEX1D1 WILD-TYPE" "TCTEX1D1 WILD-TYPE" 
        TCGA-49-6745         TCGA-50-5044         TCGA-50-5045 
"TCTEX1D1 WILD-TYPE" "TCTEX1D1 WILD-TYPE" "TCTEX1D1 WILD-TYPE" 
        TCGA-50-5049         TCGA-50-5051         TCGA-50-5055 
"TCTEX1D1 WILD-TYPE" "TCTEX1D1 WILD-TYPE" "TCTEX1D1 WILD-TYPE" 
        TCGA-50-5066         TCGA-50-5068         TCGA-50-5072 
"TCTEX1D1 WILD-TYPE" "TCTEX1D1 WILD-TYPE" "TCTEX1D1 WILD-TYPE" 
        TCGA-50-5930         TCGA-50-5931         TCGA-50-5932 
"TCTEX1D1 WILD-TYPE" "TCTEX1D1 WILD-TYPE" "TCTEX1D1 WILD-TYPE" 
        TCGA-50-5933         TCGA-50-5935         TCGA-50-5936 
"TCTEX1D1 WILD-TYPE" "TCTEX1D1 WILD-TYPE" "TCTEX1D1 WILD-TYPE" 
        TCGA-50-5939         TCGA-50-5941         TCGA-50-5942 
"TCTEX1D1 WILD-TYPE" "TCTEX1D1 WILD-TYPE" "TCTEX1D1 WILD-TYPE" 
        TCGA-50-5944         TCGA-50-5946         TCGA-50-6590 
"TCTEX1D1 WILD-TYPE" "TCTEX1D1 WILD-TYPE" "TCTEX1D1 WILD-TYPE" 
        TCGA-50-6591         TCGA-50-6592         TCGA-50-6593 
"TCTEX1D1 WILD-TYPE" "TCTEX1D1 WILD-TYPE" "TCTEX1D1 WILD-TYPE" 
        TCGA-50-6594         TCGA-50-6595         TCGA-50-6597 
"TCTEX1D1 WILD-TYPE" "TCTEX1D1 WILD-TYPE" "TCTEX1D1 WILD-TYPE" 
        TCGA-55-1592         TCGA-55-1594         TCGA-55-1595 
"TCTEX1D1 WILD-TYPE" "TCTEX1D1 WILD-TYPE" "TCTEX1D1 WILD-TYPE" 
        TCGA-55-1596         TCGA-55-5899         TCGA-55-6543 
"TCTEX1D1 WILD-TYPE" "TCTEX1D1 WILD-TYPE" "TCTEX1D1 WILD-TYPE" 
        TCGA-55-6642         TCGA-55-6712         TCGA-64-1676 
"TCTEX1D1 WILD-TYPE" "TCTEX1D1 WILD-TYPE"   "TCTEX1D1 MUTATED" 
        TCGA-64-1677         TCGA-64-1678         TCGA-64-1680 
"TCTEX1D1 WILD-TYPE" "TCTEX1D1 WILD-TYPE" "TCTEX1D1 WILD-TYPE" 
        TCGA-64-5774         TCGA-64-5775         TCGA-64-5778 
"TCTEX1D1 WILD-TYPE"   "TCTEX1D1 MUTATED" "TCTEX1D1 WILD-TYPE" 
        TCGA-64-5779         TCGA-64-5781         TCGA-64-5815 
"TCTEX1D1 WILD-TYPE" "TCTEX1D1 WILD-TYPE" "TCTEX1D1 WILD-TYPE" 
        TCGA-67-3770         TCGA-67-3771         TCGA-67-3772 
"TCTEX1D1 WILD-TYPE" "TCTEX1D1 WILD-TYPE" "TCTEX1D1 WILD-TYPE" 
        TCGA-67-3773         TCGA-67-3774         TCGA-67-6215 
"TCTEX1D1 WILD-TYPE" "TCTEX1D1 WILD-TYPE" "TCTEX1D1 WILD-TYPE" 
        TCGA-67-6216         TCGA-67-6217         TCGA-71-6725 
"TCTEX1D1 WILD-TYPE" "TCTEX1D1 WILD-TYPE" "TCTEX1D1 WILD-TYPE" 
        TCGA-73-4658         TCGA-73-4659         TCGA-73-4662 
"TCTEX1D1 WILD-TYPE" "TCTEX1D1 WILD-TYPE" "TCTEX1D1 WILD-TYPE" 
        TCGA-73-4666         TCGA-73-4668         TCGA-73-4670 
"TCTEX1D1 WILD-TYPE" "TCTEX1D1 WILD-TYPE" "TCTEX1D1 WILD-TYPE" 
        TCGA-73-4675         TCGA-73-4676         TCGA-73-4677 
"TCTEX1D1 WILD-TYPE" "TCTEX1D1 WILD-TYPE" "TCTEX1D1 WILD-TYPE" 
        TCGA-91-6828         TCGA-91-6829         TCGA-91-6831 
"TCTEX1D1 WILD-TYPE"   "TCTEX1D1 MUTATED" "TCTEX1D1 WILD-TYPE" 
        TCGA-91-6835         TCGA-91-6836 
"TCTEX1D1 WILD-TYPE" "TCTEX1D1 WILD-TYPE" 
        TCGA-05-4249         TCGA-05-4250         TCGA-05-4382 
  "TCTEX1D1 MUTATED" "TCTEX1D1 WILD-TYPE" "TCTEX1D1 WILD-TYPE" 
        TCGA-05-4384         TCGA-05-4390         TCGA-05-4396 
"TCTEX1D1 WILD-TYPE" "TCTEX1D1 WILD-TYPE" "TCTEX1D1 WILD-TYPE" 
        TCGA-05-4397         TCGA-05-4398         TCGA-05-4402 
"TCTEX1D1 WILD-TYPE" "TCTEX1D1 WILD-TYPE" "TCTEX1D1 WILD-TYPE" 
        TCGA-05-4405         TCGA-05-4415         TCGA-05-4417 
"TCTEX1D1 WILD-TYPE" "TCTEX1D1 WILD-TYPE" "TCTEX1D1 WILD-TYPE" 
        TCGA-05-4418         TCGA-05-4420         TCGA-05-4424 
"TCTEX1D1 WILD-TYPE" "TCTEX1D1 WILD-TYPE" "TCTEX1D1 WILD-TYPE" 
        TCGA-05-4426         TCGA-05-4427         TCGA-05-4430 
"TCTEX1D1 WILD-TYPE" "TCTEX1D1 WILD-TYPE" "TCTEX1D1 WILD-TYPE" 
        TCGA-05-4432         TCGA-05-4433         TCGA-05-4434 
"TCTEX1D1 WILD-TYPE" "TCTEX1D1 WILD-TYPE" "TCTEX1D1 WILD-TYPE" 
        TCGA-05-5420         TCGA-05-5423         TCGA-05-5425 
"TCTEX1D1 WILD-TYPE" "TCTEX1D1 WILD-TYPE" "TCTEX1D1 WILD-TYPE" 
        TCGA-05-5429         TCGA-05-5715         TCGA-35-3615 
"TCTEX1D1 WILD-TYPE" "TCTEX1D1 WILD-TYPE" "TCTEX1D1 WILD-TYPE" 
        TCGA-35-4122         TCGA-35-4123         TCGA-35-5375 
"TCTEX1D1 WILD-TYPE" "TCTEX1D1 WILD-TYPE" "TCTEX1D1 WILD-TYPE" 
        TCGA-38-4625         TCGA-38-4626         TCGA-38-4627 
"TCTEX1D1 WILD-TYPE" "TCTEX1D1 WILD-TYPE" "TCTEX1D1 WILD-TYPE" 
        TCGA-38-4628         TCGA-38-4629         TCGA-38-4630 
"TCTEX1D1 WILD-TYPE" "TCTEX1D1 WILD-TYPE" "TCTEX1D1 WILD-TYPE" 
        TCGA-38-4631         TCGA-38-4632         TCGA-38-6178 
"TCTEX1D1 WILD-TYPE" "TCTEX1D1 WILD-TYPE" "TCTEX1D1 WILD-TYPE" 
        TCGA-44-2655         TCGA-44-2656         TCGA-44-2657 
"TCTEX1D1 WILD-TYPE" "TCTEX1D1 WILD-TYPE" "TCTEX1D1 WILD-TYPE" 
        TCGA-44-2659         TCGA-44-2661         TCGA-44-2662 
"TCTEX1D1 WILD-TYPE" "TCTEX1D1 WILD-TYPE" "TCTEX1D1 WILD-TYPE" 
        TCGA-44-2665         TCGA-44-2666         TCGA-44-2668 
"TCTEX1D1 WILD-TYPE" "TCTEX1D1 WILD-TYPE" "TCTEX1D1 WILD-TYPE" 
        TCGA-44-3396         TCGA-44-3398         TCGA-44-3918 
"TCTEX1D1 WILD-TYPE" "TCTEX1D1 WILD-TYPE"   "TCTEX1D1 MUTATED" 
        TCGA-44-3919         TCGA-44-4112         TCGA-44-5643 
"TCTEX1D1 WILD-TYPE" "TCTEX1D1 WILD-TYPE" "TCTEX1D1 WILD-TYPE" 
        TCGA-44-5645         TCGA-44-6144         TCGA-44-6145 
"TCTEX1D1 WILD-TYPE" "TCTEX1D1 WILD-TYPE" "TCTEX1D1 WILD-TYPE" 
        TCGA-44-6146         TCGA-44-6147         TCGA-44-6148 
"TCTEX1D1 WILD-TYPE" "TCTEX1D1 WILD-TYPE" "TCTEX1D1 WILD-TYPE" 
        TCGA-44-6774         TCGA-44-6775         TCGA-44-6776 
"TCTEX1D1 WILD-TYPE" "TCTEX1D1 WILD-TYPE" "TCTEX1D1 WILD-TYPE" 
        TCGA-44-6777         TCGA-44-6778         TCGA-44-6779 
"TCTEX1D1 WILD-TYPE" "TCTEX1D1 WILD-TYPE" "TCTEX1D1 WILD-TYPE" 
        TCGA-49-4486         TCGA-49-4487         TCGA-49-4488 
"TCTEX1D1 WILD-TYPE" "TCTEX1D1 WILD-TYPE" "TCTEX1D1 WILD-TYPE" 
        TCGA-49-4490         TCGA-49-4494         TCGA-49-4501 
"TCTEX1D1 WILD-TYPE" "TCTEX1D1 WILD-TYPE" "TCTEX1D1 WILD-TYPE" 
        TCGA-49-4505         TCGA-49-4506         TCGA-49-4507 
"TCTEX1D1 WILD-TYPE" "TCTEX1D1 WILD-TYPE" "TCTEX1D1 WILD-TYPE" 
        TCGA-49-4510         TCGA-49-4512         TCGA-49-4514 
"TCTEX1D1 WILD-TYPE" "TCTEX1D1 WILD-TYPE" "TCTEX1D1 WILD-TYPE" 
        TCGA-49-6742         TCGA-49-6743         TCGA-49-6744 
"TCTEX1D1 WILD-TYPE" "TCTEX1D1 WILD-TYPE" "TCTEX1D1 WILD-TYPE" 
        TCGA-49-6745         TCGA-50-5044         TCGA-50-5045 
"TCTEX1D1 WILD-TYPE" "TCTEX1D1 WILD-TYPE" "TCTEX1D1 WILD-TYPE" 
        TCGA-50-5049         TCGA-50-5051         TCGA-50-5055 
"TCTEX1D1 WILD-TYPE" "TCTEX1D1 WILD-TYPE" "TCTEX1D1 WILD-TYPE" 
        TCGA-50-5066         TCGA-50-5068         TCGA-50-5072 
"TCTEX1D1 WILD-TYPE" "TCTEX1D1 WILD-TYPE" "TCTEX1D1 WILD-TYPE" 
        TCGA-50-5930         TCGA-50-5931         TCGA-50-5932 
"TCTEX1D1 WILD-TYPE" "TCTEX1D1 WILD-TYPE" "TCTEX1D1 WILD-TYPE" 
        TCGA-50-5933         TCGA-50-5935         TCGA-50-5936 
"TCTEX1D1 WILD-TYPE" "TCTEX1D1 WILD-TYPE" "TCTEX1D1 WILD-TYPE" 
        TCGA-50-5939         TCGA-50-5941         TCGA-50-5942 
"TCTEX1D1 WILD-TYPE" "TCTEX1D1 WILD-TYPE" "TCTEX1D1 WILD-TYPE" 
        TCGA-50-5944         TCGA-50-5946         TCGA-50-6590 
"TCTEX1D1 WILD-TYPE" "TCTEX1D1 WILD-TYPE" "TCTEX1D1 WILD-TYPE" 
        TCGA-50-6591         TCGA-50-6592         TCGA-50-6593 
"TCTEX1D1 WILD-TYPE" "TCTEX1D1 WILD-TYPE" "TCTEX1D1 WILD-TYPE" 
        TCGA-50-6594         TCGA-50-6595         TCGA-50-6597 
"TCTEX1D1 WILD-TYPE" "TCTEX1D1 WILD-TYPE" "TCTEX1D1 WILD-TYPE" 
        TCGA-55-1592         TCGA-55-1594         TCGA-55-1595 
"TCTEX1D1 WILD-TYPE" "TCTEX1D1 WILD-TYPE" "TCTEX1D1 WILD-TYPE" 
        TCGA-55-1596         TCGA-55-5899         TCGA-55-6543 
"TCTEX1D1 WILD-TYPE" "TCTEX1D1 WILD-TYPE" "TCTEX1D1 WILD-TYPE" 
        TCGA-55-6642         TCGA-55-6712         TCGA-64-1676 
"TCTEX1D1 WILD-TYPE" "TCTEX1D1 WILD-TYPE"   "TCTEX1D1 MUTATED" 
        TCGA-64-1677         TCGA-64-1678         TCGA-64-1680 
"TCTEX1D1 WILD-TYPE" "TCTEX1D1 WILD-TYPE" "TCTEX1D1 WILD-TYPE" 
        TCGA-64-5774         TCGA-64-5775         TCGA-64-5778 
"TCTEX1D1 WILD-TYPE"   "TCTEX1D1 MUTATED" "TCTEX1D1 WILD-TYPE" 
        TCGA-64-5779         TCGA-64-5781         TCGA-64-5815 
"TCTEX1D1 WILD-TYPE" "TCTEX1D1 WILD-TYPE" "TCTEX1D1 WILD-TYPE" 
        TCGA-67-3770         TCGA-67-3771         TCGA-67-3772 
"TCTEX1D1 WILD-TYPE" "TCTEX1D1 WILD-TYPE" "TCTEX1D1 WILD-TYPE" 
        TCGA-67-3773         TCGA-67-3774         TCGA-67-6215 
"TCTEX1D1 WILD-TYPE" "TCTEX1D1 WILD-TYPE" "TCTEX1D1 WILD-TYPE" 
        TCGA-67-6216         TCGA-67-6217         TCGA-71-6725 
"TCTEX1D1 WILD-TYPE" "TCTEX1D1 WILD-TYPE" "TCTEX1D1 WILD-TYPE" 
        TCGA-73-4658         TCGA-73-4659         TCGA-73-4662 
"TCTEX1D1 WILD-TYPE" "TCTEX1D1 WILD-TYPE" "TCTEX1D1 WILD-TYPE" 
        TCGA-73-4666         TCGA-73-4668         TCGA-73-4670 
"TCTEX1D1 WILD-TYPE" "TCTEX1D1 WILD-TYPE" "TCTEX1D1 WILD-TYPE" 
        TCGA-73-4675         TCGA-73-4676         TCGA-73-4677 
"TCTEX1D1 WILD-TYPE" "TCTEX1D1 WILD-TYPE" "TCTEX1D1 WILD-TYPE" 
        TCGA-91-6828         TCGA-91-6829         TCGA-91-6831 
"TCTEX1D1 WILD-TYPE"   "TCTEX1D1 MUTATED" "TCTEX1D1 WILD-TYPE" 
        TCGA-91-6835         TCGA-91-6836 
"TCTEX1D1 WILD-TYPE" "TCTEX1D1 WILD-TYPE" 
        TCGA-05-4249         TCGA-05-4250         TCGA-05-4382 
  "TCTEX1D1 MUTATED" "TCTEX1D1 WILD-TYPE" "TCTEX1D1 WILD-TYPE" 
        TCGA-05-4384         TCGA-05-4390         TCGA-05-4396 
"TCTEX1D1 WILD-TYPE" "TCTEX1D1 WILD-TYPE" "TCTEX1D1 WILD-TYPE" 
        TCGA-05-4397         TCGA-05-4398         TCGA-05-4402 
"TCTEX1D1 WILD-TYPE" "TCTEX1D1 WILD-TYPE" "TCTEX1D1 WILD-TYPE" 
        TCGA-05-4405         TCGA-05-4415         TCGA-05-4417 
"TCTEX1D1 WILD-TYPE" "TCTEX1D1 WILD-TYPE" "TCTEX1D1 WILD-TYPE" 
        TCGA-05-4418         TCGA-05-4420         TCGA-05-4424 
"TCTEX1D1 WILD-TYPE" "TCTEX1D1 WILD-TYPE" "TCTEX1D1 WILD-TYPE" 
        TCGA-05-4426         TCGA-05-4427         TCGA-05-4430 
"TCTEX1D1 WILD-TYPE" "TCTEX1D1 WILD-TYPE" "TCTEX1D1 WILD-TYPE" 
        TCGA-05-4432         TCGA-05-4433         TCGA-05-4434 
"TCTEX1D1 WILD-TYPE" "TCTEX1D1 WILD-TYPE" "TCTEX1D1 WILD-TYPE" 
        TCGA-05-5420         TCGA-05-5423         TCGA-05-5425 
"TCTEX1D1 WILD-TYPE" "TCTEX1D1 WILD-TYPE" "TCTEX1D1 WILD-TYPE" 
        TCGA-05-5429         TCGA-05-5715         TCGA-35-3615 
"TCTEX1D1 WILD-TYPE" "TCTEX1D1 WILD-TYPE" "TCTEX1D1 WILD-TYPE" 
        TCGA-35-4122         TCGA-35-4123         TCGA-35-5375 
"TCTEX1D1 WILD-TYPE" "TCTEX1D1 WILD-TYPE" "TCTEX1D1 WILD-TYPE" 
        TCGA-38-4625         TCGA-38-4626         TCGA-38-4627 
"TCTEX1D1 WILD-TYPE" "TCTEX1D1 WILD-TYPE" "TCTEX1D1 WILD-TYPE" 
        TCGA-38-4628         TCGA-38-4629         TCGA-38-4630 
"TCTEX1D1 WILD-TYPE" "TCTEX1D1 WILD-TYPE" "TCTEX1D1 WILD-TYPE" 
        TCGA-38-4631         TCGA-38-4632         TCGA-38-6178 
"TCTEX1D1 WILD-TYPE" "TCTEX1D1 WILD-TYPE" "TCTEX1D1 WILD-TYPE" 
        TCGA-44-2655         TCGA-44-2656         TCGA-44-2657 
"TCTEX1D1 WILD-TYPE" "TCTEX1D1 WILD-TYPE" "TCTEX1D1 WILD-TYPE" 
        TCGA-44-2659         TCGA-44-2661         TCGA-44-2662 
"TCTEX1D1 WILD-TYPE" "TCTEX1D1 WILD-TYPE" "TCTEX1D1 WILD-TYPE" 
        TCGA-44-2665         TCGA-44-2666         TCGA-44-2668 
"TCTEX1D1 WILD-TYPE" "TCTEX1D1 WILD-TYPE" "TCTEX1D1 WILD-TYPE" 
        TCGA-44-3396         TCGA-44-3398         TCGA-44-3918 
"TCTEX1D1 WILD-TYPE" "TCTEX1D1 WILD-TYPE"   "TCTEX1D1 MUTATED" 
        TCGA-44-3919         TCGA-44-4112         TCGA-44-5643 
"TCTEX1D1 WILD-TYPE" "TCTEX1D1 WILD-TYPE" "TCTEX1D1 WILD-TYPE" 
        TCGA-44-5645         TCGA-44-6144         TCGA-44-6145 
"TCTEX1D1 WILD-TYPE" "TCTEX1D1 WILD-TYPE" "TCTEX1D1 WILD-TYPE" 
        TCGA-44-6146         TCGA-44-6147         TCGA-44-6148 
"TCTEX1D1 WILD-TYPE" "TCTEX1D1 WILD-TYPE" "TCTEX1D1 WILD-TYPE" 
        TCGA-44-6774         TCGA-44-6775         TCGA-44-6776 
"TCTEX1D1 WILD-TYPE" "TCTEX1D1 WILD-TYPE" "TCTEX1D1 WILD-TYPE" 
        TCGA-44-6777         TCGA-44-6778         TCGA-44-6779 
"TCTEX1D1 WILD-TYPE" "TCTEX1D1 WILD-TYPE" "TCTEX1D1 WILD-TYPE" 
        TCGA-49-4486         TCGA-49-4487         TCGA-49-4488 
"TCTEX1D1 WILD-TYPE" "TCTEX1D1 WILD-TYPE" "TCTEX1D1 WILD-TYPE" 
        TCGA-49-4490         TCGA-49-4494         TCGA-49-4501 
"TCTEX1D1 WILD-TYPE" "TCTEX1D1 WILD-TYPE" "TCTEX1D1 WILD-TYPE" 
        TCGA-49-4505         TCGA-49-4506         TCGA-49-4507 
"TCTEX1D1 WILD-TYPE" "TCTEX1D1 WILD-TYPE" "TCTEX1D1 WILD-TYPE" 
        TCGA-49-4510         TCGA-49-4512         TCGA-49-4514 
"TCTEX1D1 WILD-TYPE" "TCTEX1D1 WILD-TYPE" "TCTEX1D1 WILD-TYPE" 
        TCGA-49-6742         TCGA-49-6743         TCGA-49-6744 
"TCTEX1D1 WILD-TYPE" "TCTEX1D1 WILD-TYPE" "TCTEX1D1 WILD-TYPE" 
        TCGA-49-6745         TCGA-50-5044         TCGA-50-5045 
"TCTEX1D1 WILD-TYPE" "TCTEX1D1 WILD-TYPE" "TCTEX1D1 WILD-TYPE" 
        TCGA-50-5049         TCGA-50-5051         TCGA-50-5055 
"TCTEX1D1 WILD-TYPE" "TCTEX1D1 WILD-TYPE" "TCTEX1D1 WILD-TYPE" 
        TCGA-50-5066         TCGA-50-5068         TCGA-50-5072 
"TCTEX1D1 WILD-TYPE" "TCTEX1D1 WILD-TYPE" "TCTEX1D1 WILD-TYPE" 
        TCGA-50-5930         TCGA-50-5931         TCGA-50-5932 
"TCTEX1D1 WILD-TYPE" "TCTEX1D1 WILD-TYPE" "TCTEX1D1 WILD-TYPE" 
        TCGA-50-5933         TCGA-50-5935         TCGA-50-5936 
"TCTEX1D1 WILD-TYPE" "TCTEX1D1 WILD-TYPE" "TCTEX1D1 WILD-TYPE" 
        TCGA-50-5939         TCGA-50-5941         TCGA-50-5942 
"TCTEX1D1 WILD-TYPE" "TCTEX1D1 WILD-TYPE" "TCTEX1D1 WILD-TYPE" 
        TCGA-50-5944         TCGA-50-5946         TCGA-50-6590 
"TCTEX1D1 WILD-TYPE" "TCTEX1D1 WILD-TYPE" "TCTEX1D1 WILD-TYPE" 
        TCGA-50-6591         TCGA-50-6592         TCGA-50-6593 
"TCTEX1D1 WILD-TYPE" "TCTEX1D1 WILD-TYPE" "TCTEX1D1 WILD-TYPE" 
        TCGA-50-6594         TCGA-50-6595         TCGA-50-6597 
"TCTEX1D1 WILD-TYPE" "TCTEX1D1 WILD-TYPE" "TCTEX1D1 WILD-TYPE" 
        TCGA-55-1592         TCGA-55-1594         TCGA-55-1595 
"TCTEX1D1 WILD-TYPE" "TCTEX1D1 WILD-TYPE" "TCTEX1D1 WILD-TYPE" 
        TCGA-55-1596         TCGA-55-5899         TCGA-55-6543 
"TCTEX1D1 WILD-TYPE" "TCTEX1D1 WILD-TYPE" "TCTEX1D1 WILD-TYPE" 
        TCGA-55-6642         TCGA-55-6712         TCGA-64-1676 
"TCTEX1D1 WILD-TYPE" "TCTEX1D1 WILD-TYPE"   "TCTEX1D1 MUTATED" 
        TCGA-64-1677         TCGA-64-1678         TCGA-64-1680 
"TCTEX1D1 WILD-TYPE" "TCTEX1D1 WILD-TYPE" "TCTEX1D1 WILD-TYPE" 
        TCGA-64-5774         TCGA-64-5775         TCGA-64-5778 
"TCTEX1D1 WILD-TYPE"   "TCTEX1D1 MUTATED" "TCTEX1D1 WILD-TYPE" 
        TCGA-64-5779         TCGA-64-5781         TCGA-64-5815 
"TCTEX1D1 WILD-TYPE" "TCTEX1D1 WILD-TYPE" "TCTEX1D1 WILD-TYPE" 
        TCGA-67-3770         TCGA-67-3771         TCGA-67-3772 
"TCTEX1D1 WILD-TYPE" "TCTEX1D1 WILD-TYPE" "TCTEX1D1 WILD-TYPE" 
        TCGA-67-3773         TCGA-67-3774         TCGA-67-6215 
"TCTEX1D1 WILD-TYPE" "TCTEX1D1 WILD-TYPE" "TCTEX1D1 WILD-TYPE" 
        TCGA-67-6216         TCGA-67-6217         TCGA-71-6725 
"TCTEX1D1 WILD-TYPE" "TCTEX1D1 WILD-TYPE" "TCTEX1D1 WILD-TYPE" 
        TCGA-73-4658         TCGA-73-4659         TCGA-73-4662 
"TCTEX1D1 WILD-TYPE" "TCTEX1D1 WILD-TYPE" "TCTEX1D1 WILD-TYPE" 
        TCGA-73-4666         TCGA-73-4668         TCGA-73-4670 
"TCTEX1D1 WILD-TYPE" "TCTEX1D1 WILD-TYPE" "TCTEX1D1 WILD-TYPE" 
        TCGA-73-4675         TCGA-73-4676         TCGA-73-4677 
"TCTEX1D1 WILD-TYPE" "TCTEX1D1 WILD-TYPE" "TCTEX1D1 WILD-TYPE" 
        TCGA-91-6828         TCGA-91-6829         TCGA-91-6831 
"TCTEX1D1 WILD-TYPE"   "TCTEX1D1 MUTATED" "TCTEX1D1 WILD-TYPE" 
        TCGA-91-6835         TCGA-91-6836 
"TCTEX1D1 WILD-TYPE" "TCTEX1D1 WILD-TYPE" 
[1] "hr=" "1.4"
D168V2, continuous
D168V3, binary
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  TCTEX1D1 MUTATED      1    4
  TCTEX1D1 WILD-TYPE   92   75
        clus
vv       TCTEX1D1 MUTATED TCTEX1D1 WILD-TYPE
  FEMALE                1                 92
  MALE                  4                 75
D168V4, continuous
D168V5, multiclass
D168V6, multiclass
    clus
vv   TCTEX1D1 MUTATED TCTEX1D1 WILD-TYPE
  T1                2                 39
  T2                2                106
  T3                0                 14
  T4                1                  7
D168V7, multiclass
       clus
vv      TCTEX1D1 MUTATED TCTEX1D1 WILD-TYPE
  N0                   5                 90
  N1                   0                 37
  N2+N3                0                 35
D168V8, multiclass
    clus
vv   TCTEX1D1 MUTATED TCTEX1D1 WILD-TYPE
  M0                4                133
  M1                0                  9
  MX                1                 21
D168V9, multiclass
     clus
vv    TCTEX1D1 MUTATED TCTEX1D1 WILD-TYPE
  I                  4                 84
  II                 0                 33
  III                1                 38
  IV                 0                  9
D168V10, binary
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  TCTEX1D1 MUTATED      0    5
  TCTEX1D1 WILD-TYPE   16  151
     clus
vv    TCTEX1D1 MUTATED TCTEX1D1 WILD-TYPE
  NO                 0                 16
  YES                5                151
D168V11, continuous
D168V12, continuous
[1] "Remove cluster labels:" "TCTEX1D1 MUTATED"      
clus
  TCTEX1D1 MUTATED TCTEX1D1 WILD-TYPE 
                 2                 80 
        TCGA-05-4384         TCGA-05-4390         TCGA-05-4396 
"TCTEX1D1 WILD-TYPE" "TCTEX1D1 WILD-TYPE" "TCTEX1D1 WILD-TYPE" 
        TCGA-05-4403         TCGA-05-4405         TCGA-05-4410 
"TCTEX1D1 WILD-TYPE" "TCTEX1D1 WILD-TYPE" "TCTEX1D1 WILD-TYPE" 
        TCGA-05-4415         TCGA-05-4417         TCGA-05-4424 
"TCTEX1D1 WILD-TYPE" "TCTEX1D1 WILD-TYPE" "TCTEX1D1 WILD-TYPE" 
        TCGA-05-4427         TCGA-05-4433         TCGA-05-5420 
"TCTEX1D1 WILD-TYPE" "TCTEX1D1 WILD-TYPE" "TCTEX1D1 WILD-TYPE" 
        TCGA-05-5423         TCGA-05-5425         TCGA-05-5428 
"TCTEX1D1 WILD-TYPE" "TCTEX1D1 WILD-TYPE" "TCTEX1D1 WILD-TYPE" 
        TCGA-35-4122         TCGA-35-4123         TCGA-35-5375 
"TCTEX1D1 WILD-TYPE" "TCTEX1D1 WILD-TYPE" "TCTEX1D1 WILD-TYPE" 
        TCGA-38-4629         TCGA-38-4632         TCGA-44-2655 
"TCTEX1D1 WILD-TYPE" "TCTEX1D1 WILD-TYPE" "TCTEX1D1 WILD-TYPE" 
        TCGA-44-2656         TCGA-44-2657         TCGA-44-2659 
"TCTEX1D1 WILD-TYPE" "TCTEX1D1 WILD-TYPE" "TCTEX1D1 WILD-TYPE" 
        TCGA-44-2662         TCGA-44-2668         TCGA-44-3398 
"TCTEX1D1 WILD-TYPE" "TCTEX1D1 WILD-TYPE" "TCTEX1D1 WILD-TYPE" 
        TCGA-44-4112         TCGA-44-5645         TCGA-44-6145 
"TCTEX1D1 WILD-TYPE" "TCTEX1D1 WILD-TYPE" "TCTEX1D1 WILD-TYPE" 
        TCGA-44-6146         TCGA-44-6147         TCGA-44-6148 
"TCTEX1D1 WILD-TYPE" "TCTEX1D1 WILD-TYPE" "TCTEX1D1 WILD-TYPE" 
        TCGA-44-6775         TCGA-44-6776         TCGA-44-6777 
"TCTEX1D1 WILD-TYPE" "TCTEX1D1 WILD-TYPE" "TCTEX1D1 WILD-TYPE" 
        TCGA-44-6778         TCGA-44-6779         TCGA-49-4486 
"TCTEX1D1 WILD-TYPE" "TCTEX1D1 WILD-TYPE" "TCTEX1D1 WILD-TYPE" 
        TCGA-49-4488         TCGA-49-4494         TCGA-49-4505 
"TCTEX1D1 WILD-TYPE" "TCTEX1D1 WILD-TYPE" "TCTEX1D1 WILD-TYPE" 
        TCGA-49-4507         TCGA-50-5051         TCGA-50-5072 
"TCTEX1D1 WILD-TYPE" "TCTEX1D1 WILD-TYPE" "TCTEX1D1 WILD-TYPE" 
        TCGA-50-5939         TCGA-50-5942         TCGA-50-5946 
"TCTEX1D1 WILD-TYPE" "TCTEX1D1 WILD-TYPE" "TCTEX1D1 WILD-TYPE" 
        TCGA-50-6590         TCGA-50-6594         TCGA-50-6595 
"TCTEX1D1 WILD-TYPE" "TCTEX1D1 WILD-TYPE" "TCTEX1D1 WILD-TYPE" 
        TCGA-55-1592         TCGA-55-1595         TCGA-55-6543 
"TCTEX1D1 WILD-TYPE" "TCTEX1D1 WILD-TYPE" "TCTEX1D1 WILD-TYPE" 
        TCGA-55-6712         TCGA-64-1678         TCGA-64-1680 
"TCTEX1D1 WILD-TYPE" "TCTEX1D1 WILD-TYPE" "TCTEX1D1 WILD-TYPE" 
        TCGA-64-5774         TCGA-64-5778         TCGA-64-5779 
"TCTEX1D1 WILD-TYPE" "TCTEX1D1 WILD-TYPE" "TCTEX1D1 WILD-TYPE" 
        TCGA-64-5781         TCGA-64-5815         TCGA-67-6217 
"TCTEX1D1 WILD-TYPE" "TCTEX1D1 WILD-TYPE" "TCTEX1D1 WILD-TYPE" 
        TCGA-73-4659         TCGA-73-4662         TCGA-73-4666 
"TCTEX1D1 WILD-TYPE" "TCTEX1D1 WILD-TYPE" "TCTEX1D1 WILD-TYPE" 
        TCGA-73-4668         TCGA-73-4670         TCGA-73-4675 
"TCTEX1D1 WILD-TYPE" "TCTEX1D1 WILD-TYPE" "TCTEX1D1 WILD-TYPE" 
        TCGA-73-4676         TCGA-73-4677         TCGA-75-5122 
"TCTEX1D1 WILD-TYPE" "TCTEX1D1 WILD-TYPE" "TCTEX1D1 WILD-TYPE" 
        TCGA-75-5125         TCGA-75-5126         TCGA-75-5146 
"TCTEX1D1 WILD-TYPE" "TCTEX1D1 WILD-TYPE" "TCTEX1D1 WILD-TYPE" 
        TCGA-75-6206         TCGA-75-6207         TCGA-80-5611 
"TCTEX1D1 WILD-TYPE" "TCTEX1D1 WILD-TYPE" "TCTEX1D1 WILD-TYPE" 
        TCGA-91-6828         TCGA-91-6835 
"TCTEX1D1 WILD-TYPE" "TCTEX1D1 WILD-TYPE" 
D168V13, multiclass
                                             clus
vv                                            TCTEX1D1 MUTATED
  CURRENT REFORMED SMOKER FOR < OR = 15 YEARS                1
  CURRENT REFORMED SMOKER FOR > 15 YEARS                     2
  CURRENT SMOKER                                             2
  LIFELONG NON-SMOKER                                        0
                                             clus
vv                                            TCTEX1D1 WILD-TYPE
  CURRENT REFORMED SMOKER FOR < OR = 15 YEARS                 61
  CURRENT REFORMED SMOKER FOR > 15 YEARS                      44
  CURRENT SMOKER                                              26
  LIFELONG NON-SMOKER                                         24
D168V14, continuous

Clustering(169) Variable = DCLK3 MUTATION ANALYSIS
D169V1, survival
                 sevent
clus2              0  1
  DCLK3 MUTATED    7  2
  DCLK3 WILD-TYPE 92 48
  DCLK3 MUTATED DCLK3 WILD-TYPE 
              9             140 
  DCLK3 MUTATED DCLK3 WILD-TYPE 
              2              48 
$`DCLK3 MUTATED`
TCGA-05-4382 TCGA-05-4430 TCGA-05-4432 TCGA-38-4625 TCGA-44-2657 TCGA-44-6147 
       19.92        25.02        25.02        47.61        13.15         7.76 
TCGA-44-6777 TCGA-50-5066 TCGA-91-6829 
       32.45         9.76        41.33 

$`DCLK3 WILD-TYPE`
TCGA-05-4249 TCGA-05-4250 TCGA-05-4384 TCGA-05-4390 TCGA-05-4396 TCGA-05-4397 
       38.07         3.98        14.01        37.02         9.96        24.03 
TCGA-05-4398 TCGA-05-4402 TCGA-05-4405 TCGA-05-4415 TCGA-05-4417 TCGA-05-4418 
       47.05         8.02        20.05         2.96        14.93         8.98 
TCGA-05-4420 TCGA-05-4424 TCGA-05-4426 TCGA-05-4427 TCGA-05-4433 TCGA-05-4434 
       29.95        30.02        26.01        26.01        24.00        15.02 
TCGA-05-5420 TCGA-05-5423 TCGA-05-5425 TCGA-05-5429 TCGA-05-5715 TCGA-35-3615 
        1.02         4.96         2.96         0.99         2.04         0.46 
TCGA-35-4122 TCGA-35-4123 TCGA-35-5375 TCGA-38-4626 TCGA-38-4627 TCGA-38-4628 
        7.36         5.95         8.68        85.32        37.71        49.02 
TCGA-38-4629 TCGA-38-4630 TCGA-38-4631 TCGA-38-4632 TCGA-38-6178 TCGA-44-2655 
       28.37        35.28        11.64        44.61         5.19        18.87 
TCGA-44-2656 TCGA-44-2659 TCGA-44-2661 TCGA-44-2662 TCGA-44-2665 TCGA-44-2666 
       19.10        17.39         3.39        15.78        13.15         3.19 
TCGA-44-2668 TCGA-44-3396 TCGA-44-3398 TCGA-44-3918 TCGA-44-3919 TCGA-44-4112 
        8.09        10.22         8.32         6.44         6.21         4.60 
TCGA-44-5643 TCGA-44-5645 TCGA-44-6144 TCGA-44-6145 TCGA-44-6146 TCGA-44-6148 
        3.48         6.84         0.30         3.35         9.93         3.12 
TCGA-44-6774 TCGA-44-6775 TCGA-44-6776 TCGA-44-6778 TCGA-44-6779 TCGA-49-4486 
        5.42         2.70        63.72        36.49        16.41        76.21 
TCGA-49-4487 TCGA-49-4488 TCGA-49-4490 TCGA-49-4494 TCGA-49-4501 TCGA-49-4505 
       28.11        28.57        12.66        35.54        46.72        14.07 
TCGA-49-4506 TCGA-49-4507 TCGA-49-4510 TCGA-49-4512 TCGA-49-4514 TCGA-49-6742 
       32.84         8.81        29.46        29.75        43.20        15.02 
TCGA-49-6743 TCGA-49-6744 TCGA-49-6745 TCGA-50-5044 TCGA-50-5045 TCGA-50-5049 
       12.13        12.99         4.93        20.48        71.47        48.82 
TCGA-50-5051 TCGA-50-5055 TCGA-50-5068 TCGA-50-5072 TCGA-50-5930 TCGA-50-5931 
       14.96        25.81        49.28         8.05         9.27         8.78 
TCGA-50-5932 TCGA-50-5933 TCGA-50-5935 TCGA-50-5936 TCGA-50-5939 TCGA-50-5941 
       35.87        77.88        21.47         8.45        15.12         9.37 
TCGA-50-5942 TCGA-50-5944 TCGA-50-5946 TCGA-50-6590 TCGA-50-6591 TCGA-50-6592 
        4.44        12.26        11.47        42.31         3.88        25.51 
TCGA-50-6593 TCGA-50-6594 TCGA-50-6595 TCGA-50-6597 TCGA-55-1592 TCGA-55-1594 
       11.05        12.16         6.21        33.37        23.05        38.73 
TCGA-55-1595 TCGA-55-1596 TCGA-55-5899 TCGA-55-6543 TCGA-55-6642 TCGA-55-6712 
       48.62        45.17         2.86         0.07        32.61         0.79 
TCGA-64-1676 TCGA-64-1677 TCGA-64-1678 TCGA-64-1680 TCGA-64-5774 TCGA-64-5775 
       56.81        20.65        39.09        37.02        83.84         0.10 
TCGA-64-5778 TCGA-64-5779 TCGA-64-5781 TCGA-64-5815 TCGA-67-3770 TCGA-67-3771 
       30.44        16.67        39.52         7.33         0.99         1.97 
TCGA-67-3772 TCGA-67-3773 TCGA-67-3774 TCGA-67-6215 TCGA-67-6216 TCGA-67-6217 
        0.59         2.04         0.59         0.89         0.69        13.87 
TCGA-71-6725 TCGA-73-4658 TCGA-73-4659 TCGA-73-4662 TCGA-73-4666 TCGA-73-4668 
        2.01        52.57        23.38        29.95        20.28        15.35 
TCGA-73-4670 TCGA-73-4675 TCGA-73-4676 TCGA-73-4677 TCGA-91-6828 TCGA-91-6831 
        0.46         1.32         4.01         1.25         1.22         1.28 
TCGA-91-6835 TCGA-91-6836 
        1.15         0.36 

  DCLK3 MUTATED DCLK3 WILD-TYPE 
           7.76            0.07 
  DCLK3 MUTATED DCLK3 WILD-TYPE 
          47.61           85.32 
  DCLK3 MUTATED DCLK3 WILD-TYPE 
          25.02           13.07 
[1] "7.8 - 47.6 (25.0)" "0.1 - 85.3 (13.1)"
     TCGA-05-4249      TCGA-05-4250      TCGA-05-4382      TCGA-05-4384 
"DCLK3 WILD-TYPE" "DCLK3 WILD-TYPE"   "DCLK3 MUTATED" "DCLK3 WILD-TYPE" 
     TCGA-05-4390      TCGA-05-4396      TCGA-05-4397      TCGA-05-4398 
"DCLK3 WILD-TYPE" "DCLK3 WILD-TYPE" "DCLK3 WILD-TYPE" "DCLK3 WILD-TYPE" 
     TCGA-05-4402      TCGA-05-4405      TCGA-05-4415      TCGA-05-4417 
"DCLK3 WILD-TYPE" "DCLK3 WILD-TYPE" "DCLK3 WILD-TYPE" "DCLK3 WILD-TYPE" 
     TCGA-05-4418      TCGA-05-4420      TCGA-05-4424      TCGA-05-4426 
"DCLK3 WILD-TYPE" "DCLK3 WILD-TYPE" "DCLK3 WILD-TYPE" "DCLK3 WILD-TYPE" 
     TCGA-05-4427      TCGA-05-4430      TCGA-05-4432      TCGA-05-4433 
"DCLK3 WILD-TYPE"   "DCLK3 MUTATED"   "DCLK3 MUTATED" "DCLK3 WILD-TYPE" 
     TCGA-05-4434      TCGA-05-5420      TCGA-05-5423      TCGA-05-5425 
"DCLK3 WILD-TYPE" "DCLK3 WILD-TYPE" "DCLK3 WILD-TYPE" "DCLK3 WILD-TYPE" 
     TCGA-05-5429      TCGA-05-5715      TCGA-35-3615      TCGA-35-4122 
"DCLK3 WILD-TYPE" "DCLK3 WILD-TYPE" "DCLK3 WILD-TYPE" "DCLK3 WILD-TYPE" 
     TCGA-35-4123      TCGA-35-5375      TCGA-38-4625      TCGA-38-4626 
"DCLK3 WILD-TYPE" "DCLK3 WILD-TYPE"   "DCLK3 MUTATED" "DCLK3 WILD-TYPE" 
     TCGA-38-4627      TCGA-38-4628      TCGA-38-4629      TCGA-38-4630 
"DCLK3 WILD-TYPE" "DCLK3 WILD-TYPE" "DCLK3 WILD-TYPE" "DCLK3 WILD-TYPE" 
     TCGA-38-4631      TCGA-38-4632      TCGA-38-6178      TCGA-44-2655 
"DCLK3 WILD-TYPE" "DCLK3 WILD-TYPE" "DCLK3 WILD-TYPE" "DCLK3 WILD-TYPE" 
     TCGA-44-2656      TCGA-44-2657      TCGA-44-2659      TCGA-44-2661 
"DCLK3 WILD-TYPE"   "DCLK3 MUTATED" "DCLK3 WILD-TYPE" "DCLK3 WILD-TYPE" 
     TCGA-44-2662      TCGA-44-2665      TCGA-44-2666      TCGA-44-2668 
"DCLK3 WILD-TYPE" "DCLK3 WILD-TYPE" "DCLK3 WILD-TYPE" "DCLK3 WILD-TYPE" 
     TCGA-44-3396      TCGA-44-3398      TCGA-44-3918      TCGA-44-3919 
"DCLK3 WILD-TYPE" "DCLK3 WILD-TYPE" "DCLK3 WILD-TYPE" "DCLK3 WILD-TYPE" 
     TCGA-44-4112      TCGA-44-5643      TCGA-44-5645      TCGA-44-6144 
"DCLK3 WILD-TYPE" "DCLK3 WILD-TYPE" "DCLK3 WILD-TYPE" "DCLK3 WILD-TYPE" 
     TCGA-44-6145      TCGA-44-6146      TCGA-44-6147      TCGA-44-6148 
"DCLK3 WILD-TYPE" "DCLK3 WILD-TYPE"   "DCLK3 MUTATED" "DCLK3 WILD-TYPE" 
     TCGA-44-6774      TCGA-44-6775      TCGA-44-6776      TCGA-44-6777 
"DCLK3 WILD-TYPE" "DCLK3 WILD-TYPE" "DCLK3 WILD-TYPE"   "DCLK3 MUTATED" 
     TCGA-44-6778      TCGA-44-6779      TCGA-49-4486      TCGA-49-4487 
"DCLK3 WILD-TYPE" "DCLK3 WILD-TYPE" "DCLK3 WILD-TYPE" "DCLK3 WILD-TYPE" 
     TCGA-49-4488      TCGA-49-4490      TCGA-49-4494      TCGA-49-4501 
"DCLK3 WILD-TYPE" "DCLK3 WILD-TYPE" "DCLK3 WILD-TYPE" "DCLK3 WILD-TYPE" 
     TCGA-49-4505      TCGA-49-4506      TCGA-49-4507      TCGA-49-4510 
"DCLK3 WILD-TYPE" "DCLK3 WILD-TYPE" "DCLK3 WILD-TYPE" "DCLK3 WILD-TYPE" 
     TCGA-49-4512      TCGA-49-4514      TCGA-49-6742      TCGA-49-6743 
"DCLK3 WILD-TYPE" "DCLK3 WILD-TYPE" "DCLK3 WILD-TYPE" "DCLK3 WILD-TYPE" 
     TCGA-49-6744      TCGA-49-6745      TCGA-50-5044      TCGA-50-5045 
"DCLK3 WILD-TYPE" "DCLK3 WILD-TYPE" "DCLK3 WILD-TYPE" "DCLK3 WILD-TYPE" 
     TCGA-50-5049      TCGA-50-5051      TCGA-50-5055      TCGA-50-5066 
"DCLK3 WILD-TYPE" "DCLK3 WILD-TYPE" "DCLK3 WILD-TYPE"   "DCLK3 MUTATED" 
     TCGA-50-5068      TCGA-50-5072      TCGA-50-5930      TCGA-50-5931 
"DCLK3 WILD-TYPE" "DCLK3 WILD-TYPE" "DCLK3 WILD-TYPE" "DCLK3 WILD-TYPE" 
     TCGA-50-5932      TCGA-50-5933      TCGA-50-5935      TCGA-50-5936 
"DCLK3 WILD-TYPE" "DCLK3 WILD-TYPE" "DCLK3 WILD-TYPE" "DCLK3 WILD-TYPE" 
     TCGA-50-5939      TCGA-50-5941      TCGA-50-5942      TCGA-50-5944 
"DCLK3 WILD-TYPE" "DCLK3 WILD-TYPE" "DCLK3 WILD-TYPE" "DCLK3 WILD-TYPE" 
     TCGA-50-5946      TCGA-50-6590      TCGA-50-6591      TCGA-50-6592 
"DCLK3 WILD-TYPE" "DCLK3 WILD-TYPE" "DCLK3 WILD-TYPE" "DCLK3 WILD-TYPE" 
     TCGA-50-6593      TCGA-50-6594      TCGA-50-6595      TCGA-50-6597 
"DCLK3 WILD-TYPE" "DCLK3 WILD-TYPE" "DCLK3 WILD-TYPE" "DCLK3 WILD-TYPE" 
     TCGA-55-1592      TCGA-55-1594      TCGA-55-1595      TCGA-55-1596 
"DCLK3 WILD-TYPE" "DCLK3 WILD-TYPE" "DCLK3 WILD-TYPE" "DCLK3 WILD-TYPE" 
     TCGA-55-5899      TCGA-55-6543      TCGA-55-6642      TCGA-55-6712 
"DCLK3 WILD-TYPE" "DCLK3 WILD-TYPE" "DCLK3 WILD-TYPE" "DCLK3 WILD-TYPE" 
     TCGA-64-1676      TCGA-64-1677      TCGA-64-1678      TCGA-64-1680 
"DCLK3 WILD-TYPE" "DCLK3 WILD-TYPE" "DCLK3 WILD-TYPE" "DCLK3 WILD-TYPE" 
     TCGA-64-5774      TCGA-64-5775      TCGA-64-5778      TCGA-64-5779 
"DCLK3 WILD-TYPE" "DCLK3 WILD-TYPE" "DCLK3 WILD-TYPE" "DCLK3 WILD-TYPE" 
     TCGA-64-5781      TCGA-64-5815      TCGA-67-3770      TCGA-67-3771 
"DCLK3 WILD-TYPE" "DCLK3 WILD-TYPE" "DCLK3 WILD-TYPE" "DCLK3 WILD-TYPE" 
     TCGA-67-3772      TCGA-67-3773      TCGA-67-3774      TCGA-67-6215 
"DCLK3 WILD-TYPE" "DCLK3 WILD-TYPE" "DCLK3 WILD-TYPE" "DCLK3 WILD-TYPE" 
     TCGA-67-6216      TCGA-67-6217      TCGA-71-6725      TCGA-73-4658 
"DCLK3 WILD-TYPE" "DCLK3 WILD-TYPE" "DCLK3 WILD-TYPE" "DCLK3 WILD-TYPE" 
     TCGA-73-4659      TCGA-73-4662      TCGA-73-4666      TCGA-73-4668 
"DCLK3 WILD-TYPE" "DCLK3 WILD-TYPE" "DCLK3 WILD-TYPE" "DCLK3 WILD-TYPE" 
     TCGA-73-4670      TCGA-73-4675      TCGA-73-4676      TCGA-73-4677 
"DCLK3 WILD-TYPE" "DCLK3 WILD-TYPE" "DCLK3 WILD-TYPE" "DCLK3 WILD-TYPE" 
     TCGA-91-6828      TCGA-91-6829      TCGA-91-6831      TCGA-91-6835 
"DCLK3 WILD-TYPE"   "DCLK3 MUTATED" "DCLK3 WILD-TYPE" "DCLK3 WILD-TYPE" 
     TCGA-91-6836 
"DCLK3 WILD-TYPE" 
     TCGA-05-4249      TCGA-05-4250      TCGA-05-4382      TCGA-05-4384 
"DCLK3 WILD-TYPE" "DCLK3 WILD-TYPE"   "DCLK3 MUTATED" "DCLK3 WILD-TYPE" 
     TCGA-05-4390      TCGA-05-4396      TCGA-05-4397      TCGA-05-4398 
"DCLK3 WILD-TYPE" "DCLK3 WILD-TYPE" "DCLK3 WILD-TYPE" "DCLK3 WILD-TYPE" 
     TCGA-05-4402      TCGA-05-4405      TCGA-05-4415      TCGA-05-4417 
"DCLK3 WILD-TYPE" "DCLK3 WILD-TYPE" "DCLK3 WILD-TYPE" "DCLK3 WILD-TYPE" 
     TCGA-05-4418      TCGA-05-4420      TCGA-05-4424      TCGA-05-4426 
"DCLK3 WILD-TYPE" "DCLK3 WILD-TYPE" "DCLK3 WILD-TYPE" "DCLK3 WILD-TYPE" 
     TCGA-05-4427      TCGA-05-4430      TCGA-05-4432      TCGA-05-4433 
"DCLK3 WILD-TYPE"   "DCLK3 MUTATED"   "DCLK3 MUTATED" "DCLK3 WILD-TYPE" 
     TCGA-05-4434      TCGA-05-5420      TCGA-05-5423      TCGA-05-5425 
"DCLK3 WILD-TYPE" "DCLK3 WILD-TYPE" "DCLK3 WILD-TYPE" "DCLK3 WILD-TYPE" 
     TCGA-05-5429      TCGA-05-5715      TCGA-35-3615      TCGA-35-4122 
"DCLK3 WILD-TYPE" "DCLK3 WILD-TYPE" "DCLK3 WILD-TYPE" "DCLK3 WILD-TYPE" 
     TCGA-35-4123      TCGA-35-5375      TCGA-38-4625      TCGA-38-4626 
"DCLK3 WILD-TYPE" "DCLK3 WILD-TYPE"   "DCLK3 MUTATED" "DCLK3 WILD-TYPE" 
     TCGA-38-4627      TCGA-38-4628      TCGA-38-4629      TCGA-38-4630 
"DCLK3 WILD-TYPE" "DCLK3 WILD-TYPE" "DCLK3 WILD-TYPE" "DCLK3 WILD-TYPE" 
     TCGA-38-4631      TCGA-38-4632      TCGA-38-6178      TCGA-44-2655 
"DCLK3 WILD-TYPE" "DCLK3 WILD-TYPE" "DCLK3 WILD-TYPE" "DCLK3 WILD-TYPE" 
     TCGA-44-2656      TCGA-44-2657      TCGA-44-2659      TCGA-44-2661 
"DCLK3 WILD-TYPE"   "DCLK3 MUTATED" "DCLK3 WILD-TYPE" "DCLK3 WILD-TYPE" 
     TCGA-44-2662      TCGA-44-2665      TCGA-44-2666      TCGA-44-2668 
"DCLK3 WILD-TYPE" "DCLK3 WILD-TYPE" "DCLK3 WILD-TYPE" "DCLK3 WILD-TYPE" 
     TCGA-44-3396      TCGA-44-3398      TCGA-44-3918      TCGA-44-3919 
"DCLK3 WILD-TYPE" "DCLK3 WILD-TYPE" "DCLK3 WILD-TYPE" "DCLK3 WILD-TYPE" 
     TCGA-44-4112      TCGA-44-5643      TCGA-44-5645      TCGA-44-6144 
"DCLK3 WILD-TYPE" "DCLK3 WILD-TYPE" "DCLK3 WILD-TYPE" "DCLK3 WILD-TYPE" 
     TCGA-44-6145      TCGA-44-6146      TCGA-44-6147      TCGA-44-6148 
"DCLK3 WILD-TYPE" "DCLK3 WILD-TYPE"   "DCLK3 MUTATED" "DCLK3 WILD-TYPE" 
     TCGA-44-6774      TCGA-44-6775      TCGA-44-6776      TCGA-44-6777 
"DCLK3 WILD-TYPE" "DCLK3 WILD-TYPE" "DCLK3 WILD-TYPE"   "DCLK3 MUTATED" 
     TCGA-44-6778      TCGA-44-6779      TCGA-49-4486      TCGA-49-4487 
"DCLK3 WILD-TYPE" "DCLK3 WILD-TYPE" "DCLK3 WILD-TYPE" "DCLK3 WILD-TYPE" 
     TCGA-49-4488      TCGA-49-4490      TCGA-49-4494      TCGA-49-4501 
"DCLK3 WILD-TYPE" "DCLK3 WILD-TYPE" "DCLK3 WILD-TYPE" "DCLK3 WILD-TYPE" 
     TCGA-49-4505      TCGA-49-4506      TCGA-49-4507      TCGA-49-4510 
"DCLK3 WILD-TYPE" "DCLK3 WILD-TYPE" "DCLK3 WILD-TYPE" "DCLK3 WILD-TYPE" 
     TCGA-49-4512      TCGA-49-4514      TCGA-49-6742      TCGA-49-6743 
"DCLK3 WILD-TYPE" "DCLK3 WILD-TYPE" "DCLK3 WILD-TYPE" "DCLK3 WILD-TYPE" 
     TCGA-49-6744      TCGA-49-6745      TCGA-50-5044      TCGA-50-5045 
"DCLK3 WILD-TYPE" "DCLK3 WILD-TYPE" "DCLK3 WILD-TYPE" "DCLK3 WILD-TYPE" 
     TCGA-50-5049      TCGA-50-5051      TCGA-50-5055      TCGA-50-5066 
"DCLK3 WILD-TYPE" "DCLK3 WILD-TYPE" "DCLK3 WILD-TYPE"   "DCLK3 MUTATED" 
     TCGA-50-5068      TCGA-50-5072      TCGA-50-5930      TCGA-50-5931 
"DCLK3 WILD-TYPE" "DCLK3 WILD-TYPE" "DCLK3 WILD-TYPE" "DCLK3 WILD-TYPE" 
     TCGA-50-5932      TCGA-50-5933      TCGA-50-5935      TCGA-50-5936 
"DCLK3 WILD-TYPE" "DCLK3 WILD-TYPE" "DCLK3 WILD-TYPE" "DCLK3 WILD-TYPE" 
     TCGA-50-5939      TCGA-50-5941      TCGA-50-5942      TCGA-50-5944 
"DCLK3 WILD-TYPE" "DCLK3 WILD-TYPE" "DCLK3 WILD-TYPE" "DCLK3 WILD-TYPE" 
     TCGA-50-5946      TCGA-50-6590      TCGA-50-6591      TCGA-50-6592 
"DCLK3 WILD-TYPE" "DCLK3 WILD-TYPE" "DCLK3 WILD-TYPE" "DCLK3 WILD-TYPE" 
     TCGA-50-6593      TCGA-50-6594      TCGA-50-6595      TCGA-50-6597 
"DCLK3 WILD-TYPE" "DCLK3 WILD-TYPE" "DCLK3 WILD-TYPE" "DCLK3 WILD-TYPE" 
     TCGA-55-1592      TCGA-55-1594      TCGA-55-1595      TCGA-55-1596 
"DCLK3 WILD-TYPE" "DCLK3 WILD-TYPE" "DCLK3 WILD-TYPE" "DCLK3 WILD-TYPE" 
     TCGA-55-5899      TCGA-55-6543      TCGA-55-6642      TCGA-55-6712 
"DCLK3 WILD-TYPE" "DCLK3 WILD-TYPE" "DCLK3 WILD-TYPE" "DCLK3 WILD-TYPE" 
     TCGA-64-1676      TCGA-64-1677      TCGA-64-1678      TCGA-64-1680 
"DCLK3 WILD-TYPE" "DCLK3 WILD-TYPE" "DCLK3 WILD-TYPE" "DCLK3 WILD-TYPE" 
     TCGA-64-5774      TCGA-64-5775      TCGA-64-5778      TCGA-64-5779 
"DCLK3 WILD-TYPE" "DCLK3 WILD-TYPE" "DCLK3 WILD-TYPE" "DCLK3 WILD-TYPE" 
     TCGA-64-5781      TCGA-64-5815      TCGA-67-3770      TCGA-67-3771 
"DCLK3 WILD-TYPE" "DCLK3 WILD-TYPE" "DCLK3 WILD-TYPE" "DCLK3 WILD-TYPE" 
     TCGA-67-3772      TCGA-67-3773      TCGA-67-3774      TCGA-67-6215 
"DCLK3 WILD-TYPE" "DCLK3 WILD-TYPE" "DCLK3 WILD-TYPE" "DCLK3 WILD-TYPE" 
     TCGA-67-6216      TCGA-67-6217      TCGA-71-6725      TCGA-73-4658 
"DCLK3 WILD-TYPE" "DCLK3 WILD-TYPE" "DCLK3 WILD-TYPE" "DCLK3 WILD-TYPE" 
     TCGA-73-4659      TCGA-73-4662      TCGA-73-4666      TCGA-73-4668 
"DCLK3 WILD-TYPE" "DCLK3 WILD-TYPE" "DCLK3 WILD-TYPE" "DCLK3 WILD-TYPE" 
     TCGA-73-4670      TCGA-73-4675      TCGA-73-4676      TCGA-73-4677 
"DCLK3 WILD-TYPE" "DCLK3 WILD-TYPE" "DCLK3 WILD-TYPE" "DCLK3 WILD-TYPE" 
     TCGA-91-6828      TCGA-91-6829      TCGA-91-6831      TCGA-91-6835 
"DCLK3 WILD-TYPE"   "DCLK3 MUTATED" "DCLK3 WILD-TYPE" "DCLK3 WILD-TYPE" 
     TCGA-91-6836 
"DCLK3 WILD-TYPE" 
     TCGA-05-4249      TCGA-05-4250      TCGA-05-4382      TCGA-05-4384 
"DCLK3 WILD-TYPE" "DCLK3 WILD-TYPE"   "DCLK3 MUTATED" "DCLK3 WILD-TYPE" 
     TCGA-05-4390      TCGA-05-4396      TCGA-05-4397      TCGA-05-4398 
"DCLK3 WILD-TYPE" "DCLK3 WILD-TYPE" "DCLK3 WILD-TYPE" "DCLK3 WILD-TYPE" 
     TCGA-05-4402      TCGA-05-4405      TCGA-05-4415      TCGA-05-4417 
"DCLK3 WILD-TYPE" "DCLK3 WILD-TYPE" "DCLK3 WILD-TYPE" "DCLK3 WILD-TYPE" 
     TCGA-05-4418      TCGA-05-4420      TCGA-05-4424      TCGA-05-4426 
"DCLK3 WILD-TYPE" "DCLK3 WILD-TYPE" "DCLK3 WILD-TYPE" "DCLK3 WILD-TYPE" 
     TCGA-05-4427      TCGA-05-4430      TCGA-05-4432      TCGA-05-4433 
"DCLK3 WILD-TYPE"   "DCLK3 MUTATED"   "DCLK3 MUTATED" "DCLK3 WILD-TYPE" 
     TCGA-05-4434      TCGA-05-5420      TCGA-05-5423      TCGA-05-5425 
"DCLK3 WILD-TYPE" "DCLK3 WILD-TYPE" "DCLK3 WILD-TYPE" "DCLK3 WILD-TYPE" 
     TCGA-05-5429      TCGA-05-5715      TCGA-35-3615      TCGA-35-4122 
"DCLK3 WILD-TYPE" "DCLK3 WILD-TYPE" "DCLK3 WILD-TYPE" "DCLK3 WILD-TYPE" 
     TCGA-35-4123      TCGA-35-5375      TCGA-38-4625      TCGA-38-4626 
"DCLK3 WILD-TYPE" "DCLK3 WILD-TYPE"   "DCLK3 MUTATED" "DCLK3 WILD-TYPE" 
     TCGA-38-4627      TCGA-38-4628      TCGA-38-4629      TCGA-38-4630 
"DCLK3 WILD-TYPE" "DCLK3 WILD-TYPE" "DCLK3 WILD-TYPE" "DCLK3 WILD-TYPE" 
     TCGA-38-4631      TCGA-38-4632      TCGA-38-6178      TCGA-44-2655 
"DCLK3 WILD-TYPE" "DCLK3 WILD-TYPE" "DCLK3 WILD-TYPE" "DCLK3 WILD-TYPE" 
     TCGA-44-2656      TCGA-44-2657      TCGA-44-2659      TCGA-44-2661 
"DCLK3 WILD-TYPE"   "DCLK3 MUTATED" "DCLK3 WILD-TYPE" "DCLK3 WILD-TYPE" 
     TCGA-44-2662      TCGA-44-2665      TCGA-44-2666      TCGA-44-2668 
"DCLK3 WILD-TYPE" "DCLK3 WILD-TYPE" "DCLK3 WILD-TYPE" "DCLK3 WILD-TYPE" 
     TCGA-44-3396      TCGA-44-3398      TCGA-44-3918      TCGA-44-3919 
"DCLK3 WILD-TYPE" "DCLK3 WILD-TYPE" "DCLK3 WILD-TYPE" "DCLK3 WILD-TYPE" 
     TCGA-44-4112      TCGA-44-5643      TCGA-44-5645      TCGA-44-6144 
"DCLK3 WILD-TYPE" "DCLK3 WILD-TYPE" "DCLK3 WILD-TYPE" "DCLK3 WILD-TYPE" 
     TCGA-44-6145      TCGA-44-6146      TCGA-44-6147      TCGA-44-6148 
"DCLK3 WILD-TYPE" "DCLK3 WILD-TYPE"   "DCLK3 MUTATED" "DCLK3 WILD-TYPE" 
     TCGA-44-6774      TCGA-44-6775      TCGA-44-6776      TCGA-44-6777 
"DCLK3 WILD-TYPE" "DCLK3 WILD-TYPE" "DCLK3 WILD-TYPE"   "DCLK3 MUTATED" 
     TCGA-44-6778      TCGA-44-6779      TCGA-49-4486      TCGA-49-4487 
"DCLK3 WILD-TYPE" "DCLK3 WILD-TYPE" "DCLK3 WILD-TYPE" "DCLK3 WILD-TYPE" 
     TCGA-49-4488      TCGA-49-4490      TCGA-49-4494      TCGA-49-4501 
"DCLK3 WILD-TYPE" "DCLK3 WILD-TYPE" "DCLK3 WILD-TYPE" "DCLK3 WILD-TYPE" 
     TCGA-49-4505      TCGA-49-4506      TCGA-49-4507      TCGA-49-4510 
"DCLK3 WILD-TYPE" "DCLK3 WILD-TYPE" "DCLK3 WILD-TYPE" "DCLK3 WILD-TYPE" 
     TCGA-49-4512      TCGA-49-4514      TCGA-49-6742      TCGA-49-6743 
"DCLK3 WILD-TYPE" "DCLK3 WILD-TYPE" "DCLK3 WILD-TYPE" "DCLK3 WILD-TYPE" 
     TCGA-49-6744      TCGA-49-6745      TCGA-50-5044      TCGA-50-5045 
"DCLK3 WILD-TYPE" "DCLK3 WILD-TYPE" "DCLK3 WILD-TYPE" "DCLK3 WILD-TYPE" 
     TCGA-50-5049      TCGA-50-5051      TCGA-50-5055      TCGA-50-5066 
"DCLK3 WILD-TYPE" "DCLK3 WILD-TYPE" "DCLK3 WILD-TYPE"   "DCLK3 MUTATED" 
     TCGA-50-5068      TCGA-50-5072      TCGA-50-5930      TCGA-50-5931 
"DCLK3 WILD-TYPE" "DCLK3 WILD-TYPE" "DCLK3 WILD-TYPE" "DCLK3 WILD-TYPE" 
     TCGA-50-5932      TCGA-50-5933      TCGA-50-5935      TCGA-50-5936 
"DCLK3 WILD-TYPE" "DCLK3 WILD-TYPE" "DCLK3 WILD-TYPE" "DCLK3 WILD-TYPE" 
     TCGA-50-5939      TCGA-50-5941      TCGA-50-5942      TCGA-50-5944 
"DCLK3 WILD-TYPE" "DCLK3 WILD-TYPE" "DCLK3 WILD-TYPE" "DCLK3 WILD-TYPE" 
     TCGA-50-5946      TCGA-50-6590      TCGA-50-6591      TCGA-50-6592 
"DCLK3 WILD-TYPE" "DCLK3 WILD-TYPE" "DCLK3 WILD-TYPE" "DCLK3 WILD-TYPE" 
     TCGA-50-6593      TCGA-50-6594      TCGA-50-6595      TCGA-50-6597 
"DCLK3 WILD-TYPE" "DCLK3 WILD-TYPE" "DCLK3 WILD-TYPE" "DCLK3 WILD-TYPE" 
     TCGA-55-1592      TCGA-55-1594      TCGA-55-1595      TCGA-55-1596 
"DCLK3 WILD-TYPE" "DCLK3 WILD-TYPE" "DCLK3 WILD-TYPE" "DCLK3 WILD-TYPE" 
     TCGA-55-5899      TCGA-55-6543      TCGA-55-6642      TCGA-55-6712 
"DCLK3 WILD-TYPE" "DCLK3 WILD-TYPE" "DCLK3 WILD-TYPE" "DCLK3 WILD-TYPE" 
     TCGA-64-1676      TCGA-64-1677      TCGA-64-1678      TCGA-64-1680 
"DCLK3 WILD-TYPE" "DCLK3 WILD-TYPE" "DCLK3 WILD-TYPE" "DCLK3 WILD-TYPE" 
     TCGA-64-5774      TCGA-64-5775      TCGA-64-5778      TCGA-64-5779 
"DCLK3 WILD-TYPE" "DCLK3 WILD-TYPE" "DCLK3 WILD-TYPE" "DCLK3 WILD-TYPE" 
     TCGA-64-5781      TCGA-64-5815      TCGA-67-3770      TCGA-67-3771 
"DCLK3 WILD-TYPE" "DCLK3 WILD-TYPE" "DCLK3 WILD-TYPE" "DCLK3 WILD-TYPE" 
     TCGA-67-3772      TCGA-67-3773      TCGA-67-3774      TCGA-67-6215 
"DCLK3 WILD-TYPE" "DCLK3 WILD-TYPE" "DCLK3 WILD-TYPE" "DCLK3 WILD-TYPE" 
     TCGA-67-6216      TCGA-67-6217      TCGA-71-6725      TCGA-73-4658 
"DCLK3 WILD-TYPE" "DCLK3 WILD-TYPE" "DCLK3 WILD-TYPE" "DCLK3 WILD-TYPE" 
     TCGA-73-4659      TCGA-73-4662      TCGA-73-4666      TCGA-73-4668 
"DCLK3 WILD-TYPE" "DCLK3 WILD-TYPE" "DCLK3 WILD-TYPE" "DCLK3 WILD-TYPE" 
     TCGA-73-4670      TCGA-73-4675      TCGA-73-4676      TCGA-73-4677 
"DCLK3 WILD-TYPE" "DCLK3 WILD-TYPE" "DCLK3 WILD-TYPE" "DCLK3 WILD-TYPE" 
     TCGA-91-6828      TCGA-91-6829      TCGA-91-6831      TCGA-91-6835 
"DCLK3 WILD-TYPE"   "DCLK3 MUTATED" "DCLK3 WILD-TYPE" "DCLK3 WILD-TYPE" 
     TCGA-91-6836 
"DCLK3 WILD-TYPE" 
[1] "hr=" "1.8"
D169V2, continuous
D169V3, binary
[1] "tbl2"
                 cls
clus              [,1] [,2]
  DCLK3 MUTATED      5    5
  DCLK3 WILD-TYPE   88   74
        clus
vv       DCLK3 MUTATED DCLK3 WILD-TYPE
  FEMALE             5              88
  MALE               5              74
D169V4, continuous
D169V5, multiclass
D169V6, multiclass
    clus
vv   DCLK3 MUTATED DCLK3 WILD-TYPE
  T1             2              39
  T2             8             100
  T3             0              14
  T4             0               8
D169V7, multiclass
       clus
vv      DCLK3 MUTATED DCLK3 WILD-TYPE
  N0                5              90
  N1                2              35
  N2+N3             0              35
D169V8, multiclass
    clus
vv   DCLK3 MUTATED DCLK3 WILD-TYPE
  M0             8             129
  M1             0               9
  MX             2              20
D169V9, multiclass
     clus
vv    DCLK3 MUTATED DCLK3 WILD-TYPE
  I               8              80
  II              2              31
  III             0              39
  IV              0               9
D169V10, binary
[1] "tbl2"
                 cls
clus              [,1] [,2]
  DCLK3 MUTATED      1    9
  DCLK3 WILD-TYPE   15  147
     clus
vv    DCLK3 MUTATED DCLK3 WILD-TYPE
  NO              1              15
  YES             9             147
D169V11, continuous
D169V12, continuous
D169V13, multiclass
                                             clus
vv                                            DCLK3 MUTATED DCLK3 WILD-TYPE
  CURRENT REFORMED SMOKER FOR < OR = 15 YEARS             5              57
  CURRENT REFORMED SMOKER FOR > 15 YEARS                  2              44
  CURRENT SMOKER                                          2              26
  LIFELONG NON-SMOKER                                     1              23
D169V14, continuous

Clustering(170) Variable = FGF14 MUTATION ANALYSIS
D170V1, survival
                 sevent
clus2              0  1
  FGF14 MUTATED    2  4
  FGF14 WILD-TYPE 97 46
  FGF14 MUTATED FGF14 WILD-TYPE 
              6             143 
  FGF14 MUTATED FGF14 WILD-TYPE 
              4              46 
$`FGF14 MUTATED`
TCGA-05-4382 TCGA-05-4396 TCGA-44-3918 TCGA-49-4494 TCGA-50-5930 TCGA-64-5775 
       19.92         9.96         6.44        35.54         9.27         0.10 

$`FGF14 WILD-TYPE`
TCGA-05-4249 TCGA-05-4250 TCGA-05-4384 TCGA-05-4390 TCGA-05-4397 TCGA-05-4398 
       38.07         3.98        14.01        37.02        24.03        47.05 
TCGA-05-4402 TCGA-05-4405 TCGA-05-4415 TCGA-05-4417 TCGA-05-4418 TCGA-05-4420 
        8.02        20.05         2.96        14.93         8.98        29.95 
TCGA-05-4424 TCGA-05-4426 TCGA-05-4427 TCGA-05-4430 TCGA-05-4432 TCGA-05-4433 
       30.02        26.01        26.01        25.02        25.02        24.00 
TCGA-05-4434 TCGA-05-5420 TCGA-05-5423 TCGA-05-5425 TCGA-05-5429 TCGA-05-5715 
       15.02         1.02         4.96         2.96         0.99         2.04 
TCGA-35-3615 TCGA-35-4122 TCGA-35-4123 TCGA-35-5375 TCGA-38-4625 TCGA-38-4626 
        0.46         7.36         5.95         8.68        47.61        85.32 
TCGA-38-4627 TCGA-38-4628 TCGA-38-4629 TCGA-38-4630 TCGA-38-4631 TCGA-38-4632 
       37.71        49.02        28.37        35.28        11.64        44.61 
TCGA-38-6178 TCGA-44-2655 TCGA-44-2656 TCGA-44-2657 TCGA-44-2659 TCGA-44-2661 
        5.19        18.87        19.10        13.15        17.39         3.39 
TCGA-44-2662 TCGA-44-2665 TCGA-44-2666 TCGA-44-2668 TCGA-44-3396 TCGA-44-3398 
       15.78        13.15         3.19         8.09        10.22         8.32 
TCGA-44-3919 TCGA-44-4112 TCGA-44-5643 TCGA-44-5645 TCGA-44-6144 TCGA-44-6145 
        6.21         4.60         3.48         6.84         0.30         3.35 
TCGA-44-6146 TCGA-44-6147 TCGA-44-6148 TCGA-44-6774 TCGA-44-6775 TCGA-44-6776 
        9.93         7.76         3.12         5.42         2.70        63.72 
TCGA-44-6777 TCGA-44-6778 TCGA-44-6779 TCGA-49-4486 TCGA-49-4487 TCGA-49-4488 
       32.45        36.49        16.41        76.21        28.11        28.57 
TCGA-49-4490 TCGA-49-4501 TCGA-49-4505 TCGA-49-4506 TCGA-49-4507 TCGA-49-4510 
       12.66        46.72        14.07        32.84         8.81        29.46 
TCGA-49-4512 TCGA-49-4514 TCGA-49-6742 TCGA-49-6743 TCGA-49-6744 TCGA-49-6745 
       29.75        43.20        15.02        12.13        12.99         4.93 
TCGA-50-5044 TCGA-50-5045 TCGA-50-5049 TCGA-50-5051 TCGA-50-5055 TCGA-50-5066 
       20.48        71.47        48.82        14.96        25.81         9.76 
TCGA-50-5068 TCGA-50-5072 TCGA-50-5931 TCGA-50-5932 TCGA-50-5933 TCGA-50-5935 
       49.28         8.05         8.78        35.87        77.88        21.47 
TCGA-50-5936 TCGA-50-5939 TCGA-50-5941 TCGA-50-5942 TCGA-50-5944 TCGA-50-5946 
        8.45        15.12         9.37         4.44        12.26        11.47 
TCGA-50-6590 TCGA-50-6591 TCGA-50-6592 TCGA-50-6593 TCGA-50-6594 TCGA-50-6595 
       42.31         3.88        25.51        11.05        12.16         6.21 
TCGA-50-6597 TCGA-55-1592 TCGA-55-1594 TCGA-55-1595 TCGA-55-1596 TCGA-55-5899 
       33.37        23.05        38.73        48.62        45.17         2.86 
TCGA-55-6543 TCGA-55-6642 TCGA-55-6712 TCGA-64-1676 TCGA-64-1677 TCGA-64-1678 
        0.07        32.61         0.79        56.81        20.65        39.09 
TCGA-64-1680 TCGA-64-5774 TCGA-64-5778 TCGA-64-5779 TCGA-64-5781 TCGA-64-5815 
       37.02        83.84        30.44        16.67        39.52         7.33 
TCGA-67-3770 TCGA-67-3771 TCGA-67-3772 TCGA-67-3773 TCGA-67-3774 TCGA-67-6215 
        0.99         1.97         0.59         2.04         0.59         0.89 
TCGA-67-6216 TCGA-67-6217 TCGA-71-6725 TCGA-73-4658 TCGA-73-4659 TCGA-73-4662 
        0.69        13.87         2.01        52.57        23.38        29.95 
TCGA-73-4666 TCGA-73-4668 TCGA-73-4670 TCGA-73-4675 TCGA-73-4676 TCGA-73-4677 
       20.28        15.35         0.46         1.32         4.01         1.25 
TCGA-91-6828 TCGA-91-6829 TCGA-91-6831 TCGA-91-6835 TCGA-91-6836 
        1.22        41.33         1.28         1.15         0.36 

  FGF14 MUTATED FGF14 WILD-TYPE 
           0.10            0.07 
  FGF14 MUTATED FGF14 WILD-TYPE 
          35.54           85.32 
  FGF14 MUTATED FGF14 WILD-TYPE 
          9.615          14.010 
[1] "0.1 - 35.5 (9.6)"  "0.1 - 85.3 (14.0)"
     TCGA-05-4249      TCGA-05-4250      TCGA-05-4382      TCGA-05-4384 
"FGF14 WILD-TYPE" "FGF14 WILD-TYPE"   "FGF14 MUTATED" "FGF14 WILD-TYPE" 
     TCGA-05-4390      TCGA-05-4396      TCGA-05-4397      TCGA-05-4398 
"FGF14 WILD-TYPE"   "FGF14 MUTATED" "FGF14 WILD-TYPE" "FGF14 WILD-TYPE" 
     TCGA-05-4402      TCGA-05-4405      TCGA-05-4415      TCGA-05-4417 
"FGF14 WILD-TYPE" "FGF14 WILD-TYPE" "FGF14 WILD-TYPE" "FGF14 WILD-TYPE" 
     TCGA-05-4418      TCGA-05-4420      TCGA-05-4424      TCGA-05-4426 
"FGF14 WILD-TYPE" "FGF14 WILD-TYPE" "FGF14 WILD-TYPE" "FGF14 WILD-TYPE" 
     TCGA-05-4427      TCGA-05-4430      TCGA-05-4432      TCGA-05-4433 
"FGF14 WILD-TYPE" "FGF14 WILD-TYPE" "FGF14 WILD-TYPE" "FGF14 WILD-TYPE" 
     TCGA-05-4434      TCGA-05-5420      TCGA-05-5423      TCGA-05-5425 
"FGF14 WILD-TYPE" "FGF14 WILD-TYPE" "FGF14 WILD-TYPE" "FGF14 WILD-TYPE" 
     TCGA-05-5429      TCGA-05-5715      TCGA-35-3615      TCGA-35-4122 
"FGF14 WILD-TYPE" "FGF14 WILD-TYPE" "FGF14 WILD-TYPE" "FGF14 WILD-TYPE" 
     TCGA-35-4123      TCGA-35-5375      TCGA-38-4625      TCGA-38-4626 
"FGF14 WILD-TYPE" "FGF14 WILD-TYPE" "FGF14 WILD-TYPE" "FGF14 WILD-TYPE" 
     TCGA-38-4627      TCGA-38-4628      TCGA-38-4629      TCGA-38-4630 
"FGF14 WILD-TYPE" "FGF14 WILD-TYPE" "FGF14 WILD-TYPE" "FGF14 WILD-TYPE" 
     TCGA-38-4631      TCGA-38-4632      TCGA-38-6178      TCGA-44-2655 
"FGF14 WILD-TYPE" "FGF14 WILD-TYPE" "FGF14 WILD-TYPE" "FGF14 WILD-TYPE" 
     TCGA-44-2656      TCGA-44-2657      TCGA-44-2659      TCGA-44-2661 
"FGF14 WILD-TYPE" "FGF14 WILD-TYPE" "FGF14 WILD-TYPE" "FGF14 WILD-TYPE" 
     TCGA-44-2662      TCGA-44-2665      TCGA-44-2666      TCGA-44-2668 
"FGF14 WILD-TYPE" "FGF14 WILD-TYPE" "FGF14 WILD-TYPE" "FGF14 WILD-TYPE" 
     TCGA-44-3396      TCGA-44-3398      TCGA-44-3918      TCGA-44-3919 
"FGF14 WILD-TYPE" "FGF14 WILD-TYPE"   "FGF14 MUTATED" "FGF14 WILD-TYPE" 
     TCGA-44-4112      TCGA-44-5643      TCGA-44-5645      TCGA-44-6144 
"FGF14 WILD-TYPE" "FGF14 WILD-TYPE" "FGF14 WILD-TYPE" "FGF14 WILD-TYPE" 
     TCGA-44-6145      TCGA-44-6146      TCGA-44-6147      TCGA-44-6148 
"FGF14 WILD-TYPE" "FGF14 WILD-TYPE" "FGF14 WILD-TYPE" "FGF14 WILD-TYPE" 
     TCGA-44-6774      TCGA-44-6775      TCGA-44-6776      TCGA-44-6777 
"FGF14 WILD-TYPE" "FGF14 WILD-TYPE" "FGF14 WILD-TYPE" "FGF14 WILD-TYPE" 
     TCGA-44-6778      TCGA-44-6779      TCGA-49-4486      TCGA-49-4487 
"FGF14 WILD-TYPE" "FGF14 WILD-TYPE" "FGF14 WILD-TYPE" "FGF14 WILD-TYPE" 
     TCGA-49-4488      TCGA-49-4490      TCGA-49-4494      TCGA-49-4501 
"FGF14 WILD-TYPE" "FGF14 WILD-TYPE"   "FGF14 MUTATED" "FGF14 WILD-TYPE" 
     TCGA-49-4505      TCGA-49-4506      TCGA-49-4507      TCGA-49-4510 
"FGF14 WILD-TYPE" "FGF14 WILD-TYPE" "FGF14 WILD-TYPE" "FGF14 WILD-TYPE" 
     TCGA-49-4512      TCGA-49-4514      TCGA-49-6742      TCGA-49-6743 
"FGF14 WILD-TYPE" "FGF14 WILD-TYPE" "FGF14 WILD-TYPE" "FGF14 WILD-TYPE" 
     TCGA-49-6744      TCGA-49-6745      TCGA-50-5044      TCGA-50-5045 
"FGF14 WILD-TYPE" "FGF14 WILD-TYPE" "FGF14 WILD-TYPE" "FGF14 WILD-TYPE" 
     TCGA-50-5049      TCGA-50-5051      TCGA-50-5055      TCGA-50-5066 
"FGF14 WILD-TYPE" "FGF14 WILD-TYPE" "FGF14 WILD-TYPE" "FGF14 WILD-TYPE" 
     TCGA-50-5068      TCGA-50-5072      TCGA-50-5930      TCGA-50-5931 
"FGF14 WILD-TYPE" "FGF14 WILD-TYPE"   "FGF14 MUTATED" "FGF14 WILD-TYPE" 
     TCGA-50-5932      TCGA-50-5933      TCGA-50-5935      TCGA-50-5936 
"FGF14 WILD-TYPE" "FGF14 WILD-TYPE" "FGF14 WILD-TYPE" "FGF14 WILD-TYPE" 
     TCGA-50-5939      TCGA-50-5941      TCGA-50-5942      TCGA-50-5944 
"FGF14 WILD-TYPE" "FGF14 WILD-TYPE" "FGF14 WILD-TYPE" "FGF14 WILD-TYPE" 
     TCGA-50-5946      TCGA-50-6590      TCGA-50-6591      TCGA-50-6592 
"FGF14 WILD-TYPE" "FGF14 WILD-TYPE" "FGF14 WILD-TYPE" "FGF14 WILD-TYPE" 
     TCGA-50-6593      TCGA-50-6594      TCGA-50-6595      TCGA-50-6597 
"FGF14 WILD-TYPE" "FGF14 WILD-TYPE" "FGF14 WILD-TYPE" "FGF14 WILD-TYPE" 
     TCGA-55-1592      TCGA-55-1594      TCGA-55-1595      TCGA-55-1596 
"FGF14 WILD-TYPE" "FGF14 WILD-TYPE" "FGF14 WILD-TYPE" "FGF14 WILD-TYPE" 
     TCGA-55-5899      TCGA-55-6543      TCGA-55-6642      TCGA-55-6712 
"FGF14 WILD-TYPE" "FGF14 WILD-TYPE" "FGF14 WILD-TYPE" "FGF14 WILD-TYPE" 
     TCGA-64-1676      TCGA-64-1677      TCGA-64-1678      TCGA-64-1680 
"FGF14 WILD-TYPE" "FGF14 WILD-TYPE" "FGF14 WILD-TYPE" "FGF14 WILD-TYPE" 
     TCGA-64-5774      TCGA-64-5775      TCGA-64-5778      TCGA-64-5779 
"FGF14 WILD-TYPE"   "FGF14 MUTATED" "FGF14 WILD-TYPE" "FGF14 WILD-TYPE" 
     TCGA-64-5781      TCGA-64-5815      TCGA-67-3770      TCGA-67-3771 
"FGF14 WILD-TYPE" "FGF14 WILD-TYPE" "FGF14 WILD-TYPE" "FGF14 WILD-TYPE" 
     TCGA-67-3772      TCGA-67-3773      TCGA-67-3774      TCGA-67-6215 
"FGF14 WILD-TYPE" "FGF14 WILD-TYPE" "FGF14 WILD-TYPE" "FGF14 WILD-TYPE" 
     TCGA-67-6216      TCGA-67-6217      TCGA-71-6725      TCGA-73-4658 
"FGF14 WILD-TYPE" "FGF14 WILD-TYPE" "FGF14 WILD-TYPE" "FGF14 WILD-TYPE" 
     TCGA-73-4659      TCGA-73-4662      TCGA-73-4666      TCGA-73-4668 
"FGF14 WILD-TYPE" "FGF14 WILD-TYPE" "FGF14 WILD-TYPE" "FGF14 WILD-TYPE" 
     TCGA-73-4670      TCGA-73-4675      TCGA-73-4676      TCGA-73-4677 
"FGF14 WILD-TYPE" "FGF14 WILD-TYPE" "FGF14 WILD-TYPE" "FGF14 WILD-TYPE" 
     TCGA-91-6828      TCGA-91-6829      TCGA-91-6831      TCGA-91-6835 
"FGF14 WILD-TYPE" "FGF14 WILD-TYPE" "FGF14 WILD-TYPE" "FGF14 WILD-TYPE" 
     TCGA-91-6836 
"FGF14 WILD-TYPE" 
     TCGA-05-4249      TCGA-05-4250      TCGA-05-4382      TCGA-05-4384 
"FGF14 WILD-TYPE" "FGF14 WILD-TYPE"   "FGF14 MUTATED" "FGF14 WILD-TYPE" 
     TCGA-05-4390      TCGA-05-4396      TCGA-05-4397      TCGA-05-4398 
"FGF14 WILD-TYPE"   "FGF14 MUTATED" "FGF14 WILD-TYPE" "FGF14 WILD-TYPE" 
     TCGA-05-4402      TCGA-05-4405      TCGA-05-4415      TCGA-05-4417 
"FGF14 WILD-TYPE" "FGF14 WILD-TYPE" "FGF14 WILD-TYPE" "FGF14 WILD-TYPE" 
     TCGA-05-4418      TCGA-05-4420      TCGA-05-4424      TCGA-05-4426 
"FGF14 WILD-TYPE" "FGF14 WILD-TYPE" "FGF14 WILD-TYPE" "FGF14 WILD-TYPE" 
     TCGA-05-4427      TCGA-05-4430      TCGA-05-4432      TCGA-05-4433 
"FGF14 WILD-TYPE" "FGF14 WILD-TYPE" "FGF14 WILD-TYPE" "FGF14 WILD-TYPE" 
     TCGA-05-4434      TCGA-05-5420      TCGA-05-5423      TCGA-05-5425 
"FGF14 WILD-TYPE" "FGF14 WILD-TYPE" "FGF14 WILD-TYPE" "FGF14 WILD-TYPE" 
     TCGA-05-5429      TCGA-05-5715      TCGA-35-3615      TCGA-35-4122 
"FGF14 WILD-TYPE" "FGF14 WILD-TYPE" "FGF14 WILD-TYPE" "FGF14 WILD-TYPE" 
     TCGA-35-4123      TCGA-35-5375      TCGA-38-4625      TCGA-38-4626 
"FGF14 WILD-TYPE" "FGF14 WILD-TYPE" "FGF14 WILD-TYPE" "FGF14 WILD-TYPE" 
     TCGA-38-4627      TCGA-38-4628      TCGA-38-4629      TCGA-38-4630 
"FGF14 WILD-TYPE" "FGF14 WILD-TYPE" "FGF14 WILD-TYPE" "FGF14 WILD-TYPE" 
     TCGA-38-4631      TCGA-38-4632      TCGA-38-6178      TCGA-44-2655 
"FGF14 WILD-TYPE" "FGF14 WILD-TYPE" "FGF14 WILD-TYPE" "FGF14 WILD-TYPE" 
     TCGA-44-2656      TCGA-44-2657      TCGA-44-2659      TCGA-44-2661 
"FGF14 WILD-TYPE" "FGF14 WILD-TYPE" "FGF14 WILD-TYPE" "FGF14 WILD-TYPE" 
     TCGA-44-2662      TCGA-44-2665      TCGA-44-2666      TCGA-44-2668 
"FGF14 WILD-TYPE" "FGF14 WILD-TYPE" "FGF14 WILD-TYPE" "FGF14 WILD-TYPE" 
     TCGA-44-3396      TCGA-44-3398      TCGA-44-3918      TCGA-44-3919 
"FGF14 WILD-TYPE" "FGF14 WILD-TYPE"   "FGF14 MUTATED" "FGF14 WILD-TYPE" 
     TCGA-44-4112      TCGA-44-5643      TCGA-44-5645      TCGA-44-6144 
"FGF14 WILD-TYPE" "FGF14 WILD-TYPE" "FGF14 WILD-TYPE" "FGF14 WILD-TYPE" 
     TCGA-44-6145      TCGA-44-6146      TCGA-44-6147      TCGA-44-6148 
"FGF14 WILD-TYPE" "FGF14 WILD-TYPE" "FGF14 WILD-TYPE" "FGF14 WILD-TYPE" 
     TCGA-44-6774      TCGA-44-6775      TCGA-44-6776      TCGA-44-6777 
"FGF14 WILD-TYPE" "FGF14 WILD-TYPE" "FGF14 WILD-TYPE" "FGF14 WILD-TYPE" 
     TCGA-44-6778      TCGA-44-6779      TCGA-49-4486      TCGA-49-4487 
"FGF14 WILD-TYPE" "FGF14 WILD-TYPE" "FGF14 WILD-TYPE" "FGF14 WILD-TYPE" 
     TCGA-49-4488      TCGA-49-4490      TCGA-49-4494      TCGA-49-4501 
"FGF14 WILD-TYPE" "FGF14 WILD-TYPE"   "FGF14 MUTATED" "FGF14 WILD-TYPE" 
     TCGA-49-4505      TCGA-49-4506      TCGA-49-4507      TCGA-49-4510 
"FGF14 WILD-TYPE" "FGF14 WILD-TYPE" "FGF14 WILD-TYPE" "FGF14 WILD-TYPE" 
     TCGA-49-4512      TCGA-49-4514      TCGA-49-6742      TCGA-49-6743 
"FGF14 WILD-TYPE" "FGF14 WILD-TYPE" "FGF14 WILD-TYPE" "FGF14 WILD-TYPE" 
     TCGA-49-6744      TCGA-49-6745      TCGA-50-5044      TCGA-50-5045 
"FGF14 WILD-TYPE" "FGF14 WILD-TYPE" "FGF14 WILD-TYPE" "FGF14 WILD-TYPE" 
     TCGA-50-5049      TCGA-50-5051      TCGA-50-5055      TCGA-50-5066 
"FGF14 WILD-TYPE" "FGF14 WILD-TYPE" "FGF14 WILD-TYPE" "FGF14 WILD-TYPE" 
     TCGA-50-5068      TCGA-50-5072      TCGA-50-5930      TCGA-50-5931 
"FGF14 WILD-TYPE" "FGF14 WILD-TYPE"   "FGF14 MUTATED" "FGF14 WILD-TYPE" 
     TCGA-50-5932      TCGA-50-5933      TCGA-50-5935      TCGA-50-5936 
"FGF14 WILD-TYPE" "FGF14 WILD-TYPE" "FGF14 WILD-TYPE" "FGF14 WILD-TYPE" 
     TCGA-50-5939      TCGA-50-5941      TCGA-50-5942      TCGA-50-5944 
"FGF14 WILD-TYPE" "FGF14 WILD-TYPE" "FGF14 WILD-TYPE" "FGF14 WILD-TYPE" 
     TCGA-50-5946      TCGA-50-6590      TCGA-50-6591      TCGA-50-6592 
"FGF14 WILD-TYPE" "FGF14 WILD-TYPE" "FGF14 WILD-TYPE" "FGF14 WILD-TYPE" 
     TCGA-50-6593      TCGA-50-6594      TCGA-50-6595      TCGA-50-6597 
"FGF14 WILD-TYPE" "FGF14 WILD-TYPE" "FGF14 WILD-TYPE" "FGF14 WILD-TYPE" 
     TCGA-55-1592      TCGA-55-1594      TCGA-55-1595      TCGA-55-1596 
"FGF14 WILD-TYPE" "FGF14 WILD-TYPE" "FGF14 WILD-TYPE" "FGF14 WILD-TYPE" 
     TCGA-55-5899      TCGA-55-6543      TCGA-55-6642      TCGA-55-6712 
"FGF14 WILD-TYPE" "FGF14 WILD-TYPE" "FGF14 WILD-TYPE" "FGF14 WILD-TYPE" 
     TCGA-64-1676      TCGA-64-1677      TCGA-64-1678      TCGA-64-1680 
"FGF14 WILD-TYPE" "FGF14 WILD-TYPE" "FGF14 WILD-TYPE" "FGF14 WILD-TYPE" 
     TCGA-64-5774      TCGA-64-5775      TCGA-64-5778      TCGA-64-5779 
"FGF14 WILD-TYPE"   "FGF14 MUTATED" "FGF14 WILD-TYPE" "FGF14 WILD-TYPE" 
     TCGA-64-5781      TCGA-64-5815      TCGA-67-3770      TCGA-67-3771 
"FGF14 WILD-TYPE" "FGF14 WILD-TYPE" "FGF14 WILD-TYPE" "FGF14 WILD-TYPE" 
     TCGA-67-3772      TCGA-67-3773      TCGA-67-3774      TCGA-67-6215 
"FGF14 WILD-TYPE" "FGF14 WILD-TYPE" "FGF14 WILD-TYPE" "FGF14 WILD-TYPE" 
     TCGA-67-6216      TCGA-67-6217      TCGA-71-6725      TCGA-73-4658 
"FGF14 WILD-TYPE" "FGF14 WILD-TYPE" "FGF14 WILD-TYPE" "FGF14 WILD-TYPE" 
     TCGA-73-4659      TCGA-73-4662      TCGA-73-4666      TCGA-73-4668 
"FGF14 WILD-TYPE" "FGF14 WILD-TYPE" "FGF14 WILD-TYPE" "FGF14 WILD-TYPE" 
     TCGA-73-4670      TCGA-73-4675      TCGA-73-4676      TCGA-73-4677 
"FGF14 WILD-TYPE" "FGF14 WILD-TYPE" "FGF14 WILD-TYPE" "FGF14 WILD-TYPE" 
     TCGA-91-6828      TCGA-91-6829      TCGA-91-6831      TCGA-91-6835 
"FGF14 WILD-TYPE" "FGF14 WILD-TYPE" "FGF14 WILD-TYPE" "FGF14 WILD-TYPE" 
     TCGA-91-6836 
"FGF14 WILD-TYPE" 
     TCGA-05-4249      TCGA-05-4250      TCGA-05-4382      TCGA-05-4384 
"FGF14 WILD-TYPE" "FGF14 WILD-TYPE"   "FGF14 MUTATED" "FGF14 WILD-TYPE" 
     TCGA-05-4390      TCGA-05-4396      TCGA-05-4397      TCGA-05-4398 
"FGF14 WILD-TYPE"   "FGF14 MUTATED" "FGF14 WILD-TYPE" "FGF14 WILD-TYPE" 
     TCGA-05-4402      TCGA-05-4405      TCGA-05-4415      TCGA-05-4417 
"FGF14 WILD-TYPE" "FGF14 WILD-TYPE" "FGF14 WILD-TYPE" "FGF14 WILD-TYPE" 
     TCGA-05-4418      TCGA-05-4420      TCGA-05-4424      TCGA-05-4426 
"FGF14 WILD-TYPE" "FGF14 WILD-TYPE" "FGF14 WILD-TYPE" "FGF14 WILD-TYPE" 
     TCGA-05-4427      TCGA-05-4430      TCGA-05-4432      TCGA-05-4433 
"FGF14 WILD-TYPE" "FGF14 WILD-TYPE" "FGF14 WILD-TYPE" "FGF14 WILD-TYPE" 
     TCGA-05-4434      TCGA-05-5420      TCGA-05-5423      TCGA-05-5425 
"FGF14 WILD-TYPE" "FGF14 WILD-TYPE" "FGF14 WILD-TYPE" "FGF14 WILD-TYPE" 
     TCGA-05-5429      TCGA-05-5715      TCGA-35-3615      TCGA-35-4122 
"FGF14 WILD-TYPE" "FGF14 WILD-TYPE" "FGF14 WILD-TYPE" "FGF14 WILD-TYPE" 
     TCGA-35-4123      TCGA-35-5375      TCGA-38-4625      TCGA-38-4626 
"FGF14 WILD-TYPE" "FGF14 WILD-TYPE" "FGF14 WILD-TYPE" "FGF14 WILD-TYPE" 
     TCGA-38-4627      TCGA-38-4628      TCGA-38-4629      TCGA-38-4630 
"FGF14 WILD-TYPE" "FGF14 WILD-TYPE" "FGF14 WILD-TYPE" "FGF14 WILD-TYPE" 
     TCGA-38-4631      TCGA-38-4632      TCGA-38-6178      TCGA-44-2655 
"FGF14 WILD-TYPE" "FGF14 WILD-TYPE" "FGF14 WILD-TYPE" "FGF14 WILD-TYPE" 
     TCGA-44-2656      TCGA-44-2657      TCGA-44-2659      TCGA-44-2661 
"FGF14 WILD-TYPE" "FGF14 WILD-TYPE" "FGF14 WILD-TYPE" "FGF14 WILD-TYPE" 
     TCGA-44-2662      TCGA-44-2665      TCGA-44-2666      TCGA-44-2668 
"FGF14 WILD-TYPE" "FGF14 WILD-TYPE" "FGF14 WILD-TYPE" "FGF14 WILD-TYPE" 
     TCGA-44-3396      TCGA-44-3398      TCGA-44-3918      TCGA-44-3919 
"FGF14 WILD-TYPE" "FGF14 WILD-TYPE"   "FGF14 MUTATED" "FGF14 WILD-TYPE" 
     TCGA-44-4112      TCGA-44-5643      TCGA-44-5645      TCGA-44-6144 
"FGF14 WILD-TYPE" "FGF14 WILD-TYPE" "FGF14 WILD-TYPE" "FGF14 WILD-TYPE" 
     TCGA-44-6145      TCGA-44-6146      TCGA-44-6147      TCGA-44-6148 
"FGF14 WILD-TYPE" "FGF14 WILD-TYPE" "FGF14 WILD-TYPE" "FGF14 WILD-TYPE" 
     TCGA-44-6774      TCGA-44-6775      TCGA-44-6776      TCGA-44-6777 
"FGF14 WILD-TYPE" "FGF14 WILD-TYPE" "FGF14 WILD-TYPE" "FGF14 WILD-TYPE" 
     TCGA-44-6778      TCGA-44-6779      TCGA-49-4486      TCGA-49-4487 
"FGF14 WILD-TYPE" "FGF14 WILD-TYPE" "FGF14 WILD-TYPE" "FGF14 WILD-TYPE" 
     TCGA-49-4488      TCGA-49-4490      TCGA-49-4494      TCGA-49-4501 
"FGF14 WILD-TYPE" "FGF14 WILD-TYPE"   "FGF14 MUTATED" "FGF14 WILD-TYPE" 
     TCGA-49-4505      TCGA-49-4506      TCGA-49-4507      TCGA-49-4510 
"FGF14 WILD-TYPE" "FGF14 WILD-TYPE" "FGF14 WILD-TYPE" "FGF14 WILD-TYPE" 
     TCGA-49-4512      TCGA-49-4514      TCGA-49-6742      TCGA-49-6743 
"FGF14 WILD-TYPE" "FGF14 WILD-TYPE" "FGF14 WILD-TYPE" "FGF14 WILD-TYPE" 
     TCGA-49-6744      TCGA-49-6745      TCGA-50-5044      TCGA-50-5045 
"FGF14 WILD-TYPE" "FGF14 WILD-TYPE" "FGF14 WILD-TYPE" "FGF14 WILD-TYPE" 
     TCGA-50-5049      TCGA-50-5051      TCGA-50-5055      TCGA-50-5066 
"FGF14 WILD-TYPE" "FGF14 WILD-TYPE" "FGF14 WILD-TYPE" "FGF14 WILD-TYPE" 
     TCGA-50-5068      TCGA-50-5072      TCGA-50-5930      TCGA-50-5931 
"FGF14 WILD-TYPE" "FGF14 WILD-TYPE"   "FGF14 MUTATED" "FGF14 WILD-TYPE" 
     TCGA-50-5932      TCGA-50-5933      TCGA-50-5935      TCGA-50-5936 
"FGF14 WILD-TYPE" "FGF14 WILD-TYPE" "FGF14 WILD-TYPE" "FGF14 WILD-TYPE" 
     TCGA-50-5939      TCGA-50-5941      TCGA-50-5942      TCGA-50-5944 
"FGF14 WILD-TYPE" "FGF14 WILD-TYPE" "FGF14 WILD-TYPE" "FGF14 WILD-TYPE" 
     TCGA-50-5946      TCGA-50-6590      TCGA-50-6591      TCGA-50-6592 
"FGF14 WILD-TYPE" "FGF14 WILD-TYPE" "FGF14 WILD-TYPE" "FGF14 WILD-TYPE" 
     TCGA-50-6593      TCGA-50-6594      TCGA-50-6595      TCGA-50-6597 
"FGF14 WILD-TYPE" "FGF14 WILD-TYPE" "FGF14 WILD-TYPE" "FGF14 WILD-TYPE" 
     TCGA-55-1592      TCGA-55-1594      TCGA-55-1595      TCGA-55-1596 
"FGF14 WILD-TYPE" "FGF14 WILD-TYPE" "FGF14 WILD-TYPE" "FGF14 WILD-TYPE" 
     TCGA-55-5899      TCGA-55-6543      TCGA-55-6642      TCGA-55-6712 
"FGF14 WILD-TYPE" "FGF14 WILD-TYPE" "FGF14 WILD-TYPE" "FGF14 WILD-TYPE" 
     TCGA-64-1676      TCGA-64-1677      TCGA-64-1678      TCGA-64-1680 
"FGF14 WILD-TYPE" "FGF14 WILD-TYPE" "FGF14 WILD-TYPE" "FGF14 WILD-TYPE" 
     TCGA-64-5774      TCGA-64-5775      TCGA-64-5778      TCGA-64-5779 
"FGF14 WILD-TYPE"   "FGF14 MUTATED" "FGF14 WILD-TYPE" "FGF14 WILD-TYPE" 
     TCGA-64-5781      TCGA-64-5815      TCGA-67-3770      TCGA-67-3771 
"FGF14 WILD-TYPE" "FGF14 WILD-TYPE" "FGF14 WILD-TYPE" "FGF14 WILD-TYPE" 
     TCGA-67-3772      TCGA-67-3773      TCGA-67-3774      TCGA-67-6215 
"FGF14 WILD-TYPE" "FGF14 WILD-TYPE" "FGF14 WILD-TYPE" "FGF14 WILD-TYPE" 
     TCGA-67-6216      TCGA-67-6217      TCGA-71-6725      TCGA-73-4658 
"FGF14 WILD-TYPE" "FGF14 WILD-TYPE" "FGF14 WILD-TYPE" "FGF14 WILD-TYPE" 
     TCGA-73-4659      TCGA-73-4662      TCGA-73-4666      TCGA-73-4668 
"FGF14 WILD-TYPE" "FGF14 WILD-TYPE" "FGF14 WILD-TYPE" "FGF14 WILD-TYPE" 
     TCGA-73-4670      TCGA-73-4675      TCGA-73-4676      TCGA-73-4677 
"FGF14 WILD-TYPE" "FGF14 WILD-TYPE" "FGF14 WILD-TYPE" "FGF14 WILD-TYPE" 
     TCGA-91-6828      TCGA-91-6829      TCGA-91-6831      TCGA-91-6835 
"FGF14 WILD-TYPE" "FGF14 WILD-TYPE" "FGF14 WILD-TYPE" "FGF14 WILD-TYPE" 
     TCGA-91-6836 
"FGF14 WILD-TYPE" 
[1] "hr=" "3.7"
D170V2, continuous
D170V3, binary
[1] "tbl2"
                 cls
clus              [,1] [,2]
  FGF14 MUTATED      1    6
  FGF14 WILD-TYPE   92   73
        clus
vv       FGF14 MUTATED FGF14 WILD-TYPE
  FEMALE             1              92
  MALE               6              73
D170V4, continuous
D170V5, multiclass
D170V6, multiclass
    clus
vv   FGF14 MUTATED FGF14 WILD-TYPE
  T1             1              40
  T2             3             105
  T3             1              13
  T4             2               6
D170V7, multiclass
       clus
vv      FGF14 MUTATED FGF14 WILD-TYPE
  N0                4              91
  N1                1              36
  N2+N3             2              33
D170V8, multiclass
    clus
vv   FGF14 MUTATED FGF14 WILD-TYPE
  M0             7             130
  M1             0               9
  MX             0              22
D170V9, multiclass
     clus
vv    FGF14 MUTATED FGF14 WILD-TYPE
  I               3              85
  II              0              33
  III             4              35
  IV              0               9
D170V10, binary
[1] "tbl2"
                 cls
clus              [,1] [,2]
  FGF14 MUTATED      1    6
  FGF14 WILD-TYPE   15  150
     clus
vv    FGF14 MUTATED FGF14 WILD-TYPE
  NO              1              15
  YES             6             150
D170V11, continuous
D170V12, continuous
D170V13, multiclass
                                             clus
vv                                            FGF14 MUTATED FGF14 WILD-TYPE
  CURRENT REFORMED SMOKER FOR < OR = 15 YEARS             2              60
  CURRENT REFORMED SMOKER FOR > 15 YEARS                  3              43
  CURRENT SMOKER                                          1              27
  LIFELONG NON-SMOKER                                     0              24
D170V14, continuous

Clustering(171) Variable = P2RY10 MUTATION ANALYSIS
D171V1, survival
                  sevent
clus2               0  1
  P2RY10 MUTATED    2  4
  P2RY10 WILD-TYPE 97 46
  P2RY10 MUTATED P2RY10 WILD-TYPE 
               6              143 
  P2RY10 MUTATED P2RY10 WILD-TYPE 
               4               46 
$`P2RY10 MUTATED`
TCGA-05-4432 TCGA-50-5931 TCGA-50-5933 TCGA-50-6592 TCGA-55-1592 TCGA-73-4666 
       25.02         8.78        77.88        25.51        23.05        20.28 

$`P2RY10 WILD-TYPE`
TCGA-05-4249 TCGA-05-4250 TCGA-05-4382 TCGA-05-4384 TCGA-05-4390 TCGA-05-4396 
       38.07         3.98        19.92        14.01        37.02         9.96 
TCGA-05-4397 TCGA-05-4398 TCGA-05-4402 TCGA-05-4405 TCGA-05-4415 TCGA-05-4417 
       24.03        47.05         8.02        20.05         2.96        14.93 
TCGA-05-4418 TCGA-05-4420 TCGA-05-4424 TCGA-05-4426 TCGA-05-4427 TCGA-05-4430 
        8.98        29.95        30.02        26.01        26.01        25.02 
TCGA-05-4433 TCGA-05-4434 TCGA-05-5420 TCGA-05-5423 TCGA-05-5425 TCGA-05-5429 
       24.00        15.02         1.02         4.96         2.96         0.99 
TCGA-05-5715 TCGA-35-3615 TCGA-35-4122 TCGA-35-4123 TCGA-35-5375 TCGA-38-4625 
        2.04         0.46         7.36         5.95         8.68        47.61 
TCGA-38-4626 TCGA-38-4627 TCGA-38-4628 TCGA-38-4629 TCGA-38-4630 TCGA-38-4631 
       85.32        37.71        49.02        28.37        35.28        11.64 
TCGA-38-4632 TCGA-38-6178 TCGA-44-2655 TCGA-44-2656 TCGA-44-2657 TCGA-44-2659 
       44.61         5.19        18.87        19.10        13.15        17.39 
TCGA-44-2661 TCGA-44-2662 TCGA-44-2665 TCGA-44-2666 TCGA-44-2668 TCGA-44-3396 
        3.39        15.78        13.15         3.19         8.09        10.22 
TCGA-44-3398 TCGA-44-3918 TCGA-44-3919 TCGA-44-4112 TCGA-44-5643 TCGA-44-5645 
        8.32         6.44         6.21         4.60         3.48         6.84 
TCGA-44-6144 TCGA-44-6145 TCGA-44-6146 TCGA-44-6147 TCGA-44-6148 TCGA-44-6774 
        0.30         3.35         9.93         7.76         3.12         5.42 
TCGA-44-6775 TCGA-44-6776 TCGA-44-6777 TCGA-44-6778 TCGA-44-6779 TCGA-49-4486 
        2.70        63.72        32.45        36.49        16.41        76.21 
TCGA-49-4487 TCGA-49-4488 TCGA-49-4490 TCGA-49-4494 TCGA-49-4501 TCGA-49-4505 
       28.11        28.57        12.66        35.54        46.72        14.07 
TCGA-49-4506 TCGA-49-4507 TCGA-49-4510 TCGA-49-4512 TCGA-49-4514 TCGA-49-6742 
       32.84         8.81        29.46        29.75        43.20        15.02 
TCGA-49-6743 TCGA-49-6744 TCGA-49-6745 TCGA-50-5044 TCGA-50-5045 TCGA-50-5049 
       12.13        12.99         4.93        20.48        71.47        48.82 
TCGA-50-5051 TCGA-50-5055 TCGA-50-5066 TCGA-50-5068 TCGA-50-5072 TCGA-50-5930 
       14.96        25.81         9.76        49.28         8.05         9.27 
TCGA-50-5932 TCGA-50-5935 TCGA-50-5936 TCGA-50-5939 TCGA-50-5941 TCGA-50-5942 
       35.87        21.47         8.45        15.12         9.37         4.44 
TCGA-50-5944 TCGA-50-5946 TCGA-50-6590 TCGA-50-6591 TCGA-50-6593 TCGA-50-6594 
       12.26        11.47        42.31         3.88        11.05        12.16 
TCGA-50-6595 TCGA-50-6597 TCGA-55-1594 TCGA-55-1595 TCGA-55-1596 TCGA-55-5899 
        6.21        33.37        38.73        48.62        45.17         2.86 
TCGA-55-6543 TCGA-55-6642 TCGA-55-6712 TCGA-64-1676 TCGA-64-1677 TCGA-64-1678 
        0.07        32.61         0.79        56.81        20.65        39.09 
TCGA-64-1680 TCGA-64-5774 TCGA-64-5775 TCGA-64-5778 TCGA-64-5779 TCGA-64-5781 
       37.02        83.84         0.10        30.44        16.67        39.52 
TCGA-64-5815 TCGA-67-3770 TCGA-67-3771 TCGA-67-3772 TCGA-67-3773 TCGA-67-3774 
        7.33         0.99         1.97         0.59         2.04         0.59 
TCGA-67-6215 TCGA-67-6216 TCGA-67-6217 TCGA-71-6725 TCGA-73-4658 TCGA-73-4659 
        0.89         0.69        13.87         2.01        52.57        23.38 
TCGA-73-4662 TCGA-73-4668 TCGA-73-4670 TCGA-73-4675 TCGA-73-4676 TCGA-73-4677 
       29.95        15.35         0.46         1.32         4.01         1.25 
TCGA-91-6828 TCGA-91-6829 TCGA-91-6831 TCGA-91-6835 TCGA-91-6836 
        1.22        41.33         1.28         1.15         0.36 

  P2RY10 MUTATED P2RY10 WILD-TYPE 
            8.78             0.07 
  P2RY10 MUTATED P2RY10 WILD-TYPE 
           77.88            85.32 
  P2RY10 MUTATED P2RY10 WILD-TYPE 
          24.035           13.150 
[1] "8.8 - 77.9 (24.0)" "0.1 - 85.3 (13.2)"
      TCGA-05-4249       TCGA-05-4250       TCGA-05-4382       TCGA-05-4384 
"P2RY10 WILD-TYPE" "P2RY10 WILD-TYPE" "P2RY10 WILD-TYPE" "P2RY10 WILD-TYPE" 
      TCGA-05-4390       TCGA-05-4396       TCGA-05-4397       TCGA-05-4398 
"P2RY10 WILD-TYPE" "P2RY10 WILD-TYPE" "P2RY10 WILD-TYPE" "P2RY10 WILD-TYPE" 
      TCGA-05-4402       TCGA-05-4405       TCGA-05-4415       TCGA-05-4417 
"P2RY10 WILD-TYPE" "P2RY10 WILD-TYPE" "P2RY10 WILD-TYPE" "P2RY10 WILD-TYPE" 
      TCGA-05-4418       TCGA-05-4420       TCGA-05-4424       TCGA-05-4426 
"P2RY10 WILD-TYPE" "P2RY10 WILD-TYPE" "P2RY10 WILD-TYPE" "P2RY10 WILD-TYPE" 
      TCGA-05-4427       TCGA-05-4430       TCGA-05-4432       TCGA-05-4433 
"P2RY10 WILD-TYPE" "P2RY10 WILD-TYPE"   "P2RY10 MUTATED" "P2RY10 WILD-TYPE" 
      TCGA-05-4434       TCGA-05-5420       TCGA-05-5423       TCGA-05-5425 
"P2RY10 WILD-TYPE" "P2RY10 WILD-TYPE" "P2RY10 WILD-TYPE" "P2RY10 WILD-TYPE" 
      TCGA-05-5429       TCGA-05-5715       TCGA-35-3615       TCGA-35-4122 
"P2RY10 WILD-TYPE" "P2RY10 WILD-TYPE" "P2RY10 WILD-TYPE" "P2RY10 WILD-TYPE" 
      TCGA-35-4123       TCGA-35-5375       TCGA-38-4625       TCGA-38-4626 
"P2RY10 WILD-TYPE" "P2RY10 WILD-TYPE" "P2RY10 WILD-TYPE" "P2RY10 WILD-TYPE" 
      TCGA-38-4627       TCGA-38-4628       TCGA-38-4629       TCGA-38-4630 
"P2RY10 WILD-TYPE" "P2RY10 WILD-TYPE" "P2RY10 WILD-TYPE" "P2RY10 WILD-TYPE" 
      TCGA-38-4631       TCGA-38-4632       TCGA-38-6178       TCGA-44-2655 
"P2RY10 WILD-TYPE" "P2RY10 WILD-TYPE" "P2RY10 WILD-TYPE" "P2RY10 WILD-TYPE" 
      TCGA-44-2656       TCGA-44-2657       TCGA-44-2659       TCGA-44-2661 
"P2RY10 WILD-TYPE" "P2RY10 WILD-TYPE" "P2RY10 WILD-TYPE" "P2RY10 WILD-TYPE" 
      TCGA-44-2662       TCGA-44-2665       TCGA-44-2666       TCGA-44-2668 
"P2RY10 WILD-TYPE" "P2RY10 WILD-TYPE" "P2RY10 WILD-TYPE" "P2RY10 WILD-TYPE" 
      TCGA-44-3396       TCGA-44-3398       TCGA-44-3918       TCGA-44-3919 
"P2RY10 WILD-TYPE" "P2RY10 WILD-TYPE" "P2RY10 WILD-TYPE" "P2RY10 WILD-TYPE" 
      TCGA-44-4112       TCGA-44-5643       TCGA-44-5645       TCGA-44-6144 
"P2RY10 WILD-TYPE" "P2RY10 WILD-TYPE" "P2RY10 WILD-TYPE" "P2RY10 WILD-TYPE" 
      TCGA-44-6145       TCGA-44-6146       TCGA-44-6147       TCGA-44-6148 
"P2RY10 WILD-TYPE" "P2RY10 WILD-TYPE" "P2RY10 WILD-TYPE" "P2RY10 WILD-TYPE" 
      TCGA-44-6774       TCGA-44-6775       TCGA-44-6776       TCGA-44-6777 
"P2RY10 WILD-TYPE" "P2RY10 WILD-TYPE" "P2RY10 WILD-TYPE" "P2RY10 WILD-TYPE" 
      TCGA-44-6778       TCGA-44-6779       TCGA-49-4486       TCGA-49-4487 
"P2RY10 WILD-TYPE" "P2RY10 WILD-TYPE" "P2RY10 WILD-TYPE" "P2RY10 WILD-TYPE" 
      TCGA-49-4488       TCGA-49-4490       TCGA-49-4494       TCGA-49-4501 
"P2RY10 WILD-TYPE" "P2RY10 WILD-TYPE" "P2RY10 WILD-TYPE" "P2RY10 WILD-TYPE" 
      TCGA-49-4505       TCGA-49-4506       TCGA-49-4507       TCGA-49-4510 
"P2RY10 WILD-TYPE" "P2RY10 WILD-TYPE" "P2RY10 WILD-TYPE" "P2RY10 WILD-TYPE" 
      TCGA-49-4512       TCGA-49-4514       TCGA-49-6742       TCGA-49-6743 
"P2RY10 WILD-TYPE" "P2RY10 WILD-TYPE" "P2RY10 WILD-TYPE" "P2RY10 WILD-TYPE" 
      TCGA-49-6744       TCGA-49-6745       TCGA-50-5044       TCGA-50-5045 
"P2RY10 WILD-TYPE" "P2RY10 WILD-TYPE" "P2RY10 WILD-TYPE" "P2RY10 WILD-TYPE" 
      TCGA-50-5049       TCGA-50-5051       TCGA-50-5055       TCGA-50-5066 
"P2RY10 WILD-TYPE" "P2RY10 WILD-TYPE" "P2RY10 WILD-TYPE" "P2RY10 WILD-TYPE" 
      TCGA-50-5068       TCGA-50-5072       TCGA-50-5930       TCGA-50-5931 
"P2RY10 WILD-TYPE" "P2RY10 WILD-TYPE" "P2RY10 WILD-TYPE"   "P2RY10 MUTATED" 
      TCGA-50-5932       TCGA-50-5933       TCGA-50-5935       TCGA-50-5936 
"P2RY10 WILD-TYPE"   "P2RY10 MUTATED" "P2RY10 WILD-TYPE" "P2RY10 WILD-TYPE" 
      TCGA-50-5939       TCGA-50-5941       TCGA-50-5942       TCGA-50-5944 
"P2RY10 WILD-TYPE" "P2RY10 WILD-TYPE" "P2RY10 WILD-TYPE" "P2RY10 WILD-TYPE" 
      TCGA-50-5946       TCGA-50-6590       TCGA-50-6591       TCGA-50-6592 
"P2RY10 WILD-TYPE" "P2RY10 WILD-TYPE" "P2RY10 WILD-TYPE"   "P2RY10 MUTATED" 
      TCGA-50-6593       TCGA-50-6594       TCGA-50-6595       TCGA-50-6597 
"P2RY10 WILD-TYPE" "P2RY10 WILD-TYPE" "P2RY10 WILD-TYPE" "P2RY10 WILD-TYPE" 
      TCGA-55-1592       TCGA-55-1594       TCGA-55-1595       TCGA-55-1596 
  "P2RY10 MUTATED" "P2RY10 WILD-TYPE" "P2RY10 WILD-TYPE" "P2RY10 WILD-TYPE" 
      TCGA-55-5899       TCGA-55-6543       TCGA-55-6642       TCGA-55-6712 
"P2RY10 WILD-TYPE" "P2RY10 WILD-TYPE" "P2RY10 WILD-TYPE" "P2RY10 WILD-TYPE" 
      TCGA-64-1676       TCGA-64-1677       TCGA-64-1678       TCGA-64-1680 
"P2RY10 WILD-TYPE" "P2RY10 WILD-TYPE" "P2RY10 WILD-TYPE" "P2RY10 WILD-TYPE" 
      TCGA-64-5774       TCGA-64-5775       TCGA-64-5778       TCGA-64-5779 
"P2RY10 WILD-TYPE" "P2RY10 WILD-TYPE" "P2RY10 WILD-TYPE" "P2RY10 WILD-TYPE" 
      TCGA-64-5781       TCGA-64-5815       TCGA-67-3770       TCGA-67-3771 
"P2RY10 WILD-TYPE" "P2RY10 WILD-TYPE" "P2RY10 WILD-TYPE" "P2RY10 WILD-TYPE" 
      TCGA-67-3772       TCGA-67-3773       TCGA-67-3774       TCGA-67-6215 
"P2RY10 WILD-TYPE" "P2RY10 WILD-TYPE" "P2RY10 WILD-TYPE" "P2RY10 WILD-TYPE" 
      TCGA-67-6216       TCGA-67-6217       TCGA-71-6725       TCGA-73-4658 
"P2RY10 WILD-TYPE" "P2RY10 WILD-TYPE" "P2RY10 WILD-TYPE" "P2RY10 WILD-TYPE" 
      TCGA-73-4659       TCGA-73-4662       TCGA-73-4666       TCGA-73-4668 
"P2RY10 WILD-TYPE" "P2RY10 WILD-TYPE"   "P2RY10 MUTATED" "P2RY10 WILD-TYPE" 
      TCGA-73-4670       TCGA-73-4675       TCGA-73-4676       TCGA-73-4677 
"P2RY10 WILD-TYPE" "P2RY10 WILD-TYPE" "P2RY10 WILD-TYPE" "P2RY10 WILD-TYPE" 
      TCGA-91-6828       TCGA-91-6829       TCGA-91-6831       TCGA-91-6835 
"P2RY10 WILD-TYPE" "P2RY10 WILD-TYPE" "P2RY10 WILD-TYPE" "P2RY10 WILD-TYPE" 
      TCGA-91-6836 
"P2RY10 WILD-TYPE" 
      TCGA-05-4249       TCGA-05-4250       TCGA-05-4382       TCGA-05-4384 
"P2RY10 WILD-TYPE" "P2RY10 WILD-TYPE" "P2RY10 WILD-TYPE" "P2RY10 WILD-TYPE" 
      TCGA-05-4390       TCGA-05-4396       TCGA-05-4397       TCGA-05-4398 
"P2RY10 WILD-TYPE" "P2RY10 WILD-TYPE" "P2RY10 WILD-TYPE" "P2RY10 WILD-TYPE" 
      TCGA-05-4402       TCGA-05-4405       TCGA-05-4415       TCGA-05-4417 
"P2RY10 WILD-TYPE" "P2RY10 WILD-TYPE" "P2RY10 WILD-TYPE" "P2RY10 WILD-TYPE" 
      TCGA-05-4418       TCGA-05-4420       TCGA-05-4424       TCGA-05-4426 
"P2RY10 WILD-TYPE" "P2RY10 WILD-TYPE" "P2RY10 WILD-TYPE" "P2RY10 WILD-TYPE" 
      TCGA-05-4427       TCGA-05-4430       TCGA-05-4432       TCGA-05-4433 
"P2RY10 WILD-TYPE" "P2RY10 WILD-TYPE"   "P2RY10 MUTATED" "P2RY10 WILD-TYPE" 
      TCGA-05-4434       TCGA-05-5420       TCGA-05-5423       TCGA-05-5425 
"P2RY10 WILD-TYPE" "P2RY10 WILD-TYPE" "P2RY10 WILD-TYPE" "P2RY10 WILD-TYPE" 
      TCGA-05-5429       TCGA-05-5715       TCGA-35-3615       TCGA-35-4122 
"P2RY10 WILD-TYPE" "P2RY10 WILD-TYPE" "P2RY10 WILD-TYPE" "P2RY10 WILD-TYPE" 
      TCGA-35-4123       TCGA-35-5375       TCGA-38-4625       TCGA-38-4626 
"P2RY10 WILD-TYPE" "P2RY10 WILD-TYPE" "P2RY10 WILD-TYPE" "P2RY10 WILD-TYPE" 
      TCGA-38-4627       TCGA-38-4628       TCGA-38-4629       TCGA-38-4630 
"P2RY10 WILD-TYPE" "P2RY10 WILD-TYPE" "P2RY10 WILD-TYPE" "P2RY10 WILD-TYPE" 
      TCGA-38-4631       TCGA-38-4632       TCGA-38-6178       TCGA-44-2655 
"P2RY10 WILD-TYPE" "P2RY10 WILD-TYPE" "P2RY10 WILD-TYPE" "P2RY10 WILD-TYPE" 
      TCGA-44-2656       TCGA-44-2657       TCGA-44-2659       TCGA-44-2661 
"P2RY10 WILD-TYPE" "P2RY10 WILD-TYPE" "P2RY10 WILD-TYPE" "P2RY10 WILD-TYPE" 
      TCGA-44-2662       TCGA-44-2665       TCGA-44-2666       TCGA-44-2668 
"P2RY10 WILD-TYPE" "P2RY10 WILD-TYPE" "P2RY10 WILD-TYPE" "P2RY10 WILD-TYPE" 
      TCGA-44-3396       TCGA-44-3398       TCGA-44-3918       TCGA-44-3919 
"P2RY10 WILD-TYPE" "P2RY10 WILD-TYPE" "P2RY10 WILD-TYPE" "P2RY10 WILD-TYPE" 
      TCGA-44-4112       TCGA-44-5643       TCGA-44-5645       TCGA-44-6144 
"P2RY10 WILD-TYPE" "P2RY10 WILD-TYPE" "P2RY10 WILD-TYPE" "P2RY10 WILD-TYPE" 
      TCGA-44-6145       TCGA-44-6146       TCGA-44-6147       TCGA-44-6148 
"P2RY10 WILD-TYPE" "P2RY10 WILD-TYPE" "P2RY10 WILD-TYPE" "P2RY10 WILD-TYPE" 
      TCGA-44-6774       TCGA-44-6775       TCGA-44-6776       TCGA-44-6777 
"P2RY10 WILD-TYPE" "P2RY10 WILD-TYPE" "P2RY10 WILD-TYPE" "P2RY10 WILD-TYPE" 
      TCGA-44-6778       TCGA-44-6779       TCGA-49-4486       TCGA-49-4487 
"P2RY10 WILD-TYPE" "P2RY10 WILD-TYPE" "P2RY10 WILD-TYPE" "P2RY10 WILD-TYPE" 
      TCGA-49-4488       TCGA-49-4490       TCGA-49-4494       TCGA-49-4501 
"P2RY10 WILD-TYPE" "P2RY10 WILD-TYPE" "P2RY10 WILD-TYPE" "P2RY10 WILD-TYPE" 
      TCGA-49-4505       TCGA-49-4506       TCGA-49-4507       TCGA-49-4510 
"P2RY10 WILD-TYPE" "P2RY10 WILD-TYPE" "P2RY10 WILD-TYPE" "P2RY10 WILD-TYPE" 
      TCGA-49-4512       TCGA-49-4514       TCGA-49-6742       TCGA-49-6743 
"P2RY10 WILD-TYPE" "P2RY10 WILD-TYPE" "P2RY10 WILD-TYPE" "P2RY10 WILD-TYPE" 
      TCGA-49-6744       TCGA-49-6745       TCGA-50-5044       TCGA-50-5045 
"P2RY10 WILD-TYPE" "P2RY10 WILD-TYPE" "P2RY10 WILD-TYPE" "P2RY10 WILD-TYPE" 
      TCGA-50-5049       TCGA-50-5051       TCGA-50-5055       TCGA-50-5066 
"P2RY10 WILD-TYPE" "P2RY10 WILD-TYPE" "P2RY10 WILD-TYPE" "P2RY10 WILD-TYPE" 
      TCGA-50-5068       TCGA-50-5072       TCGA-50-5930       TCGA-50-5931 
"P2RY10 WILD-TYPE" "P2RY10 WILD-TYPE" "P2RY10 WILD-TYPE"   "P2RY10 MUTATED" 
      TCGA-50-5932       TCGA-50-5933       TCGA-50-5935       TCGA-50-5936 
"P2RY10 WILD-TYPE"   "P2RY10 MUTATED" "P2RY10 WILD-TYPE" "P2RY10 WILD-TYPE" 
      TCGA-50-5939       TCGA-50-5941       TCGA-50-5942       TCGA-50-5944 
"P2RY10 WILD-TYPE" "P2RY10 WILD-TYPE" "P2RY10 WILD-TYPE" "P2RY10 WILD-TYPE" 
      TCGA-50-5946       TCGA-50-6590       TCGA-50-6591       TCGA-50-6592 
"P2RY10 WILD-TYPE" "P2RY10 WILD-TYPE" "P2RY10 WILD-TYPE"   "P2RY10 MUTATED" 
      TCGA-50-6593       TCGA-50-6594       TCGA-50-6595       TCGA-50-6597 
"P2RY10 WILD-TYPE" "P2RY10 WILD-TYPE" "P2RY10 WILD-TYPE" "P2RY10 WILD-TYPE" 
      TCGA-55-1592       TCGA-55-1594       TCGA-55-1595       TCGA-55-1596 
  "P2RY10 MUTATED" "P2RY10 WILD-TYPE" "P2RY10 WILD-TYPE" "P2RY10 WILD-TYPE" 
      TCGA-55-5899       TCGA-55-6543       TCGA-55-6642       TCGA-55-6712 
"P2RY10 WILD-TYPE" "P2RY10 WILD-TYPE" "P2RY10 WILD-TYPE" "P2RY10 WILD-TYPE" 
      TCGA-64-1676       TCGA-64-1677       TCGA-64-1678       TCGA-64-1680 
"P2RY10 WILD-TYPE" "P2RY10 WILD-TYPE" "P2RY10 WILD-TYPE" "P2RY10 WILD-TYPE" 
      TCGA-64-5774       TCGA-64-5775       TCGA-64-5778       TCGA-64-5779 
"P2RY10 WILD-TYPE" "P2RY10 WILD-TYPE" "P2RY10 WILD-TYPE" "P2RY10 WILD-TYPE" 
      TCGA-64-5781       TCGA-64-5815       TCGA-67-3770       TCGA-67-3771 
"P2RY10 WILD-TYPE" "P2RY10 WILD-TYPE" "P2RY10 WILD-TYPE" "P2RY10 WILD-TYPE" 
      TCGA-67-3772       TCGA-67-3773       TCGA-67-3774       TCGA-67-6215 
"P2RY10 WILD-TYPE" "P2RY10 WILD-TYPE" "P2RY10 WILD-TYPE" "P2RY10 WILD-TYPE" 
      TCGA-67-6216       TCGA-67-6217       TCGA-71-6725       TCGA-73-4658 
"P2RY10 WILD-TYPE" "P2RY10 WILD-TYPE" "P2RY10 WILD-TYPE" "P2RY10 WILD-TYPE" 
      TCGA-73-4659       TCGA-73-4662       TCGA-73-4666       TCGA-73-4668 
"P2RY10 WILD-TYPE" "P2RY10 WILD-TYPE"   "P2RY10 MUTATED" "P2RY10 WILD-TYPE" 
      TCGA-73-4670       TCGA-73-4675       TCGA-73-4676       TCGA-73-4677 
"P2RY10 WILD-TYPE" "P2RY10 WILD-TYPE" "P2RY10 WILD-TYPE" "P2RY10 WILD-TYPE" 
      TCGA-91-6828       TCGA-91-6829       TCGA-91-6831       TCGA-91-6835 
"P2RY10 WILD-TYPE" "P2RY10 WILD-TYPE" "P2RY10 WILD-TYPE" "P2RY10 WILD-TYPE" 
      TCGA-91-6836 
"P2RY10 WILD-TYPE" 
      TCGA-05-4249       TCGA-05-4250       TCGA-05-4382       TCGA-05-4384 
"P2RY10 WILD-TYPE" "P2RY10 WILD-TYPE" "P2RY10 WILD-TYPE" "P2RY10 WILD-TYPE" 
      TCGA-05-4390       TCGA-05-4396       TCGA-05-4397       TCGA-05-4398 
"P2RY10 WILD-TYPE" "P2RY10 WILD-TYPE" "P2RY10 WILD-TYPE" "P2RY10 WILD-TYPE" 
      TCGA-05-4402       TCGA-05-4405       TCGA-05-4415       TCGA-05-4417 
"P2RY10 WILD-TYPE" "P2RY10 WILD-TYPE" "P2RY10 WILD-TYPE" "P2RY10 WILD-TYPE" 
      TCGA-05-4418       TCGA-05-4420       TCGA-05-4424       TCGA-05-4426 
"P2RY10 WILD-TYPE" "P2RY10 WILD-TYPE" "P2RY10 WILD-TYPE" "P2RY10 WILD-TYPE" 
      TCGA-05-4427       TCGA-05-4430       TCGA-05-4432       TCGA-05-4433 
"P2RY10 WILD-TYPE" "P2RY10 WILD-TYPE"   "P2RY10 MUTATED" "P2RY10 WILD-TYPE" 
      TCGA-05-4434       TCGA-05-5420       TCGA-05-5423       TCGA-05-5425 
"P2RY10 WILD-TYPE" "P2RY10 WILD-TYPE" "P2RY10 WILD-TYPE" "P2RY10 WILD-TYPE" 
      TCGA-05-5429       TCGA-05-5715       TCGA-35-3615       TCGA-35-4122 
"P2RY10 WILD-TYPE" "P2RY10 WILD-TYPE" "P2RY10 WILD-TYPE" "P2RY10 WILD-TYPE" 
      TCGA-35-4123       TCGA-35-5375       TCGA-38-4625       TCGA-38-4626 
"P2RY10 WILD-TYPE" "P2RY10 WILD-TYPE" "P2RY10 WILD-TYPE" "P2RY10 WILD-TYPE" 
      TCGA-38-4627       TCGA-38-4628       TCGA-38-4629       TCGA-38-4630 
"P2RY10 WILD-TYPE" "P2RY10 WILD-TYPE" "P2RY10 WILD-TYPE" "P2RY10 WILD-TYPE" 
      TCGA-38-4631       TCGA-38-4632       TCGA-38-6178       TCGA-44-2655 
"P2RY10 WILD-TYPE" "P2RY10 WILD-TYPE" "P2RY10 WILD-TYPE" "P2RY10 WILD-TYPE" 
      TCGA-44-2656       TCGA-44-2657       TCGA-44-2659       TCGA-44-2661 
"P2RY10 WILD-TYPE" "P2RY10 WILD-TYPE" "P2RY10 WILD-TYPE" "P2RY10 WILD-TYPE" 
      TCGA-44-2662       TCGA-44-2665       TCGA-44-2666       TCGA-44-2668 
"P2RY10 WILD-TYPE" "P2RY10 WILD-TYPE" "P2RY10 WILD-TYPE" "P2RY10 WILD-TYPE" 
      TCGA-44-3396       TCGA-44-3398       TCGA-44-3918       TCGA-44-3919 
"P2RY10 WILD-TYPE" "P2RY10 WILD-TYPE" "P2RY10 WILD-TYPE" "P2RY10 WILD-TYPE" 
      TCGA-44-4112       TCGA-44-5643       TCGA-44-5645       TCGA-44-6144 
"P2RY10 WILD-TYPE" "P2RY10 WILD-TYPE" "P2RY10 WILD-TYPE" "P2RY10 WILD-TYPE" 
      TCGA-44-6145       TCGA-44-6146       TCGA-44-6147       TCGA-44-6148 
"P2RY10 WILD-TYPE" "P2RY10 WILD-TYPE" "P2RY10 WILD-TYPE" "P2RY10 WILD-TYPE" 
      TCGA-44-6774       TCGA-44-6775       TCGA-44-6776       TCGA-44-6777 
"P2RY10 WILD-TYPE" "P2RY10 WILD-TYPE" "P2RY10 WILD-TYPE" "P2RY10 WILD-TYPE" 
      TCGA-44-6778       TCGA-44-6779       TCGA-49-4486       TCGA-49-4487 
"P2RY10 WILD-TYPE" "P2RY10 WILD-TYPE" "P2RY10 WILD-TYPE" "P2RY10 WILD-TYPE" 
      TCGA-49-4488       TCGA-49-4490       TCGA-49-4494       TCGA-49-4501 
"P2RY10 WILD-TYPE" "P2RY10 WILD-TYPE" "P2RY10 WILD-TYPE" "P2RY10 WILD-TYPE" 
      TCGA-49-4505       TCGA-49-4506       TCGA-49-4507       TCGA-49-4510 
"P2RY10 WILD-TYPE" "P2RY10 WILD-TYPE" "P2RY10 WILD-TYPE" "P2RY10 WILD-TYPE" 
      TCGA-49-4512       TCGA-49-4514       TCGA-49-6742       TCGA-49-6743 
"P2RY10 WILD-TYPE" "P2RY10 WILD-TYPE" "P2RY10 WILD-TYPE" "P2RY10 WILD-TYPE" 
      TCGA-49-6744       TCGA-49-6745       TCGA-50-5044       TCGA-50-5045 
"P2RY10 WILD-TYPE" "P2RY10 WILD-TYPE" "P2RY10 WILD-TYPE" "P2RY10 WILD-TYPE" 
      TCGA-50-5049       TCGA-50-5051       TCGA-50-5055       TCGA-50-5066 
"P2RY10 WILD-TYPE" "P2RY10 WILD-TYPE" "P2RY10 WILD-TYPE" "P2RY10 WILD-TYPE" 
      TCGA-50-5068       TCGA-50-5072       TCGA-50-5930       TCGA-50-5931 
"P2RY10 WILD-TYPE" "P2RY10 WILD-TYPE" "P2RY10 WILD-TYPE"   "P2RY10 MUTATED" 
      TCGA-50-5932       TCGA-50-5933       TCGA-50-5935       TCGA-50-5936 
"P2RY10 WILD-TYPE"   "P2RY10 MUTATED" "P2RY10 WILD-TYPE" "P2RY10 WILD-TYPE" 
      TCGA-50-5939       TCGA-50-5941       TCGA-50-5942       TCGA-50-5944 
"P2RY10 WILD-TYPE" "P2RY10 WILD-TYPE" "P2RY10 WILD-TYPE" "P2RY10 WILD-TYPE" 
      TCGA-50-5946       TCGA-50-6590       TCGA-50-6591       TCGA-50-6592 
"P2RY10 WILD-TYPE" "P2RY10 WILD-TYPE" "P2RY10 WILD-TYPE"   "P2RY10 MUTATED" 
      TCGA-50-6593       TCGA-50-6594       TCGA-50-6595       TCGA-50-6597 
"P2RY10 WILD-TYPE" "P2RY10 WILD-TYPE" "P2RY10 WILD-TYPE" "P2RY10 WILD-TYPE" 
      TCGA-55-1592       TCGA-55-1594       TCGA-55-1595       TCGA-55-1596 
  "P2RY10 MUTATED" "P2RY10 WILD-TYPE" "P2RY10 WILD-TYPE" "P2RY10 WILD-TYPE" 
      TCGA-55-5899       TCGA-55-6543       TCGA-55-6642       TCGA-55-6712 
"P2RY10 WILD-TYPE" "P2RY10 WILD-TYPE" "P2RY10 WILD-TYPE" "P2RY10 WILD-TYPE" 
      TCGA-64-1676       TCGA-64-1677       TCGA-64-1678       TCGA-64-1680 
"P2RY10 WILD-TYPE" "P2RY10 WILD-TYPE" "P2RY10 WILD-TYPE" "P2RY10 WILD-TYPE" 
      TCGA-64-5774       TCGA-64-5775       TCGA-64-5778       TCGA-64-5779 
"P2RY10 WILD-TYPE" "P2RY10 WILD-TYPE" "P2RY10 WILD-TYPE" "P2RY10 WILD-TYPE" 
      TCGA-64-5781       TCGA-64-5815       TCGA-67-3770       TCGA-67-3771 
"P2RY10 WILD-TYPE" "P2RY10 WILD-TYPE" "P2RY10 WILD-TYPE" "P2RY10 WILD-TYPE" 
      TCGA-67-3772       TCGA-67-3773       TCGA-67-3774       TCGA-67-6215 
"P2RY10 WILD-TYPE" "P2RY10 WILD-TYPE" "P2RY10 WILD-TYPE" "P2RY10 WILD-TYPE" 
      TCGA-67-6216       TCGA-67-6217       TCGA-71-6725       TCGA-73-4658 
"P2RY10 WILD-TYPE" "P2RY10 WILD-TYPE" "P2RY10 WILD-TYPE" "P2RY10 WILD-TYPE" 
      TCGA-73-4659       TCGA-73-4662       TCGA-73-4666       TCGA-73-4668 
"P2RY10 WILD-TYPE" "P2RY10 WILD-TYPE"   "P2RY10 MUTATED" "P2RY10 WILD-TYPE" 
      TCGA-73-4670       TCGA-73-4675       TCGA-73-4676       TCGA-73-4677 
"P2RY10 WILD-TYPE" "P2RY10 WILD-TYPE" "P2RY10 WILD-TYPE" "P2RY10 WILD-TYPE" 
      TCGA-91-6828       TCGA-91-6829       TCGA-91-6831       TCGA-91-6835 
"P2RY10 WILD-TYPE" "P2RY10 WILD-TYPE" "P2RY10 WILD-TYPE" "P2RY10 WILD-TYPE" 
      TCGA-91-6836 
"P2RY10 WILD-TYPE" 
[1] "hr=" "1.2"
D171V2, continuous
D171V3, binary
[1] "tbl2"
                  cls
clus               [,1] [,2]
  P2RY10 MUTATED      3    4
  P2RY10 WILD-TYPE   90   75
        clus
vv       P2RY10 MUTATED P2RY10 WILD-TYPE
  FEMALE              3               90
  MALE                4               75
D171V4, continuous
[1] "Remove cluster labels:" "P2RY10 MUTATED"        
clus
  P2RY10 MUTATED P2RY10 WILD-TYPE 
               1               11 
      TCGA-35-4122       TCGA-35-4123       TCGA-35-5375       TCGA-64-1677 
"P2RY10 WILD-TYPE" "P2RY10 WILD-TYPE" "P2RY10 WILD-TYPE" "P2RY10 WILD-TYPE" 
      TCGA-64-5778       TCGA-71-6725       TCGA-73-4659       TCGA-73-4662 
"P2RY10 WILD-TYPE" "P2RY10 WILD-TYPE" "P2RY10 WILD-TYPE" "P2RY10 WILD-TYPE" 
      TCGA-73-4668       TCGA-73-4676       TCGA-75-5122 
"P2RY10 WILD-TYPE" "P2RY10 WILD-TYPE" "P2RY10 WILD-TYPE" 
D171V5, multiclass
D171V6, multiclass
    clus
vv   P2RY10 MUTATED P2RY10 WILD-TYPE
  T1              1               40
  T2              5              103
  T3              0               14
  T4              1                7
D171V7, multiclass
       clus
vv      P2RY10 MUTATED P2RY10 WILD-TYPE
  N0                 5               90
  N1                 1               36
  N2+N3              1               34
D171V8, multiclass
    clus
vv   P2RY10 MUTATED P2RY10 WILD-TYPE
  M0              6              131
  M1              1                8
  MX              0               22
D171V9, multiclass
     clus
vv    P2RY10 MUTATED P2RY10 WILD-TYPE
  I                4               84
  II               1               32
  III              1               38
  IV               1                8
D171V10, binary
[1] "tbl2"
                  cls
clus               [,1] [,2]
  P2RY10 MUTATED      2    5
  P2RY10 WILD-TYPE   14  151
     clus
vv    P2RY10 MUTATED P2RY10 WILD-TYPE
  NO               2               14
  YES              5              151
D171V11, continuous
D171V12, continuous
D171V13, multiclass
                                             clus
vv                                            P2RY10 MUTATED P2RY10 WILD-TYPE
  CURRENT REFORMED SMOKER FOR < OR = 15 YEARS              4               58
  CURRENT REFORMED SMOKER FOR > 15 YEARS                   0               46
  CURRENT SMOKER                                           1               27
  LIFELONG NON-SMOKER                                      0               24
D171V14, continuous

Clustering(172) Variable = RIT2 MUTATION ANALYSIS
D172V1, survival
                sevent
clus2             0  1
  RIT2 MUTATED    2  1
  RIT2 WILD-TYPE 97 49
  RIT2 MUTATED RIT2 WILD-TYPE 
             3            146 
  RIT2 MUTATED RIT2 WILD-TYPE 
             1             49 
$`RIT2 MUTATED`
TCGA-05-4396 TCGA-05-4427 TCGA-49-6742 
        9.96        26.01        15.02 

$`RIT2 WILD-TYPE`
TCGA-05-4249 TCGA-05-4250 TCGA-05-4382 TCGA-05-4384 TCGA-05-4390 TCGA-05-4397 
       38.07         3.98        19.92        14.01        37.02        24.03 
TCGA-05-4398 TCGA-05-4402 TCGA-05-4405 TCGA-05-4415 TCGA-05-4417 TCGA-05-4418 
       47.05         8.02        20.05         2.96        14.93         8.98 
TCGA-05-4420 TCGA-05-4424 TCGA-05-4426 TCGA-05-4430 TCGA-05-4432 TCGA-05-4433 
       29.95        30.02        26.01        25.02        25.02        24.00 
TCGA-05-4434 TCGA-05-5420 TCGA-05-5423 TCGA-05-5425 TCGA-05-5429 TCGA-05-5715 
       15.02         1.02         4.96         2.96         0.99         2.04 
TCGA-35-3615 TCGA-35-4122 TCGA-35-4123 TCGA-35-5375 TCGA-38-4625 TCGA-38-4626 
        0.46         7.36         5.95         8.68        47.61        85.32 
TCGA-38-4627 TCGA-38-4628 TCGA-38-4629 TCGA-38-4630 TCGA-38-4631 TCGA-38-4632 
       37.71        49.02        28.37        35.28        11.64        44.61 
TCGA-38-6178 TCGA-44-2655 TCGA-44-2656 TCGA-44-2657 TCGA-44-2659 TCGA-44-2661 
        5.19        18.87        19.10        13.15        17.39         3.39 
TCGA-44-2662 TCGA-44-2665 TCGA-44-2666 TCGA-44-2668 TCGA-44-3396 TCGA-44-3398 
       15.78        13.15         3.19         8.09        10.22         8.32 
TCGA-44-3918 TCGA-44-3919 TCGA-44-4112 TCGA-44-5643 TCGA-44-5645 TCGA-44-6144 
        6.44         6.21         4.60         3.48         6.84         0.30 
TCGA-44-6145 TCGA-44-6146 TCGA-44-6147 TCGA-44-6148 TCGA-44-6774 TCGA-44-6775 
        3.35         9.93         7.76         3.12         5.42         2.70 
TCGA-44-6776 TCGA-44-6777 TCGA-44-6778 TCGA-44-6779 TCGA-49-4486 TCGA-49-4487 
       63.72        32.45        36.49        16.41        76.21        28.11 
TCGA-49-4488 TCGA-49-4490 TCGA-49-4494 TCGA-49-4501 TCGA-49-4505 TCGA-49-4506 
       28.57        12.66        35.54        46.72        14.07        32.84 
TCGA-49-4507 TCGA-49-4510 TCGA-49-4512 TCGA-49-4514 TCGA-49-6743 TCGA-49-6744 
        8.81        29.46        29.75        43.20        12.13        12.99 
TCGA-49-6745 TCGA-50-5044 TCGA-50-5045 TCGA-50-5049 TCGA-50-5051 TCGA-50-5055 
        4.93        20.48        71.47        48.82        14.96        25.81 
TCGA-50-5066 TCGA-50-5068 TCGA-50-5072 TCGA-50-5930 TCGA-50-5931 TCGA-50-5932 
        9.76        49.28         8.05         9.27         8.78        35.87 
TCGA-50-5933 TCGA-50-5935 TCGA-50-5936 TCGA-50-5939 TCGA-50-5941 TCGA-50-5942 
       77.88        21.47         8.45        15.12         9.37         4.44 
TCGA-50-5944 TCGA-50-5946 TCGA-50-6590 TCGA-50-6591 TCGA-50-6592 TCGA-50-6593 
       12.26        11.47        42.31         3.88        25.51        11.05 
TCGA-50-6594 TCGA-50-6595 TCGA-50-6597 TCGA-55-1592 TCGA-55-1594 TCGA-55-1595 
       12.16         6.21        33.37        23.05        38.73        48.62 
TCGA-55-1596 TCGA-55-5899 TCGA-55-6543 TCGA-55-6642 TCGA-55-6712 TCGA-64-1676 
       45.17         2.86         0.07        32.61         0.79        56.81 
TCGA-64-1677 TCGA-64-1678 TCGA-64-1680 TCGA-64-5774 TCGA-64-5775 TCGA-64-5778 
       20.65        39.09        37.02        83.84         0.10        30.44 
TCGA-64-5779 TCGA-64-5781 TCGA-64-5815 TCGA-67-3770 TCGA-67-3771 TCGA-67-3772 
       16.67        39.52         7.33         0.99         1.97         0.59 
TCGA-67-3773 TCGA-67-3774 TCGA-67-6215 TCGA-67-6216 TCGA-67-6217 TCGA-71-6725 
        2.04         0.59         0.89         0.69        13.87         2.01 
TCGA-73-4658 TCGA-73-4659 TCGA-73-4662 TCGA-73-4666 TCGA-73-4668 TCGA-73-4670 
       52.57        23.38        29.95        20.28        15.35         0.46 
TCGA-73-4675 TCGA-73-4676 TCGA-73-4677 TCGA-91-6828 TCGA-91-6829 TCGA-91-6831 
        1.32         4.01         1.25         1.22        41.33         1.28 
TCGA-91-6835 TCGA-91-6836 
        1.15         0.36 

  RIT2 MUTATED RIT2 WILD-TYPE 
          9.96           0.07 
  RIT2 MUTATED RIT2 WILD-TYPE 
         26.01          85.32 
  RIT2 MUTATED RIT2 WILD-TYPE 
         15.02          13.51 
[1] "10.0 - 26.0 (15.0)" "0.1 - 85.3 (13.5)" 
    TCGA-05-4249     TCGA-05-4250     TCGA-05-4382     TCGA-05-4384 
"RIT2 WILD-TYPE" "RIT2 WILD-TYPE" "RIT2 WILD-TYPE" "RIT2 WILD-TYPE" 
    TCGA-05-4390     TCGA-05-4396     TCGA-05-4397     TCGA-05-4398 
"RIT2 WILD-TYPE"   "RIT2 MUTATED" "RIT2 WILD-TYPE" "RIT2 WILD-TYPE" 
    TCGA-05-4402     TCGA-05-4405     TCGA-05-4415     TCGA-05-4417 
"RIT2 WILD-TYPE" "RIT2 WILD-TYPE" "RIT2 WILD-TYPE" "RIT2 WILD-TYPE" 
    TCGA-05-4418     TCGA-05-4420     TCGA-05-4424     TCGA-05-4426 
"RIT2 WILD-TYPE" "RIT2 WILD-TYPE" "RIT2 WILD-TYPE" "RIT2 WILD-TYPE" 
    TCGA-05-4427     TCGA-05-4430     TCGA-05-4432     TCGA-05-4433 
  "RIT2 MUTATED" "RIT2 WILD-TYPE" "RIT2 WILD-TYPE" "RIT2 WILD-TYPE" 
    TCGA-05-4434     TCGA-05-5420     TCGA-05-5423     TCGA-05-5425 
"RIT2 WILD-TYPE" "RIT2 WILD-TYPE" "RIT2 WILD-TYPE" "RIT2 WILD-TYPE" 
    TCGA-05-5429     TCGA-05-5715     TCGA-35-3615     TCGA-35-4122 
"RIT2 WILD-TYPE" "RIT2 WILD-TYPE" "RIT2 WILD-TYPE" "RIT2 WILD-TYPE" 
    TCGA-35-4123     TCGA-35-5375     TCGA-38-4625     TCGA-38-4626 
"RIT2 WILD-TYPE" "RIT2 WILD-TYPE" "RIT2 WILD-TYPE" "RIT2 WILD-TYPE" 
    TCGA-38-4627     TCGA-38-4628     TCGA-38-4629     TCGA-38-4630 
"RIT2 WILD-TYPE" "RIT2 WILD-TYPE" "RIT2 WILD-TYPE" "RIT2 WILD-TYPE" 
    TCGA-38-4631     TCGA-38-4632     TCGA-38-6178     TCGA-44-2655 
"RIT2 WILD-TYPE" "RIT2 WILD-TYPE" "RIT2 WILD-TYPE" "RIT2 WILD-TYPE" 
    TCGA-44-2656     TCGA-44-2657     TCGA-44-2659     TCGA-44-2661 
"RIT2 WILD-TYPE" "RIT2 WILD-TYPE" "RIT2 WILD-TYPE" "RIT2 WILD-TYPE" 
    TCGA-44-2662     TCGA-44-2665     TCGA-44-2666     TCGA-44-2668 
"RIT2 WILD-TYPE" "RIT2 WILD-TYPE" "RIT2 WILD-TYPE" "RIT2 WILD-TYPE" 
    TCGA-44-3396     TCGA-44-3398     TCGA-44-3918     TCGA-44-3919 
"RIT2 WILD-TYPE" "RIT2 WILD-TYPE" "RIT2 WILD-TYPE" "RIT2 WILD-TYPE" 
    TCGA-44-4112     TCGA-44-5643     TCGA-44-5645     TCGA-44-6144 
"RIT2 WILD-TYPE" "RIT2 WILD-TYPE" "RIT2 WILD-TYPE" "RIT2 WILD-TYPE" 
    TCGA-44-6145     TCGA-44-6146     TCGA-44-6147     TCGA-44-6148 
"RIT2 WILD-TYPE" "RIT2 WILD-TYPE" "RIT2 WILD-TYPE" "RIT2 WILD-TYPE" 
    TCGA-44-6774     TCGA-44-6775     TCGA-44-6776     TCGA-44-6777 
"RIT2 WILD-TYPE" "RIT2 WILD-TYPE" "RIT2 WILD-TYPE" "RIT2 WILD-TYPE" 
    TCGA-44-6778     TCGA-44-6779     TCGA-49-4486     TCGA-49-4487 
"RIT2 WILD-TYPE" "RIT2 WILD-TYPE" "RIT2 WILD-TYPE" "RIT2 WILD-TYPE" 
    TCGA-49-4488     TCGA-49-4490     TCGA-49-4494     TCGA-49-4501 
"RIT2 WILD-TYPE" "RIT2 WILD-TYPE" "RIT2 WILD-TYPE" "RIT2 WILD-TYPE" 
    TCGA-49-4505     TCGA-49-4506     TCGA-49-4507     TCGA-49-4510 
"RIT2 WILD-TYPE" "RIT2 WILD-TYPE" "RIT2 WILD-TYPE" "RIT2 WILD-TYPE" 
    TCGA-49-4512     TCGA-49-4514     TCGA-49-6742     TCGA-49-6743 
"RIT2 WILD-TYPE" "RIT2 WILD-TYPE"   "RIT2 MUTATED" "RIT2 WILD-TYPE" 
    TCGA-49-6744     TCGA-49-6745     TCGA-50-5044     TCGA-50-5045 
"RIT2 WILD-TYPE" "RIT2 WILD-TYPE" "RIT2 WILD-TYPE" "RIT2 WILD-TYPE" 
    TCGA-50-5049     TCGA-50-5051     TCGA-50-5055     TCGA-50-5066 
"RIT2 WILD-TYPE" "RIT2 WILD-TYPE" "RIT2 WILD-TYPE" "RIT2 WILD-TYPE" 
    TCGA-50-5068     TCGA-50-5072     TCGA-50-5930     TCGA-50-5931 
"RIT2 WILD-TYPE" "RIT2 WILD-TYPE" "RIT2 WILD-TYPE" "RIT2 WILD-TYPE" 
    TCGA-50-5932     TCGA-50-5933     TCGA-50-5935     TCGA-50-5936 
"RIT2 WILD-TYPE" "RIT2 WILD-TYPE" "RIT2 WILD-TYPE" "RIT2 WILD-TYPE" 
    TCGA-50-5939     TCGA-50-5941     TCGA-50-5942     TCGA-50-5944 
"RIT2 WILD-TYPE" "RIT2 WILD-TYPE" "RIT2 WILD-TYPE" "RIT2 WILD-TYPE" 
    TCGA-50-5946     TCGA-50-6590     TCGA-50-6591     TCGA-50-6592 
"RIT2 WILD-TYPE" "RIT2 WILD-TYPE" "RIT2 WILD-TYPE" "RIT2 WILD-TYPE" 
    TCGA-50-6593     TCGA-50-6594     TCGA-50-6595     TCGA-50-6597 
"RIT2 WILD-TYPE" "RIT2 WILD-TYPE" "RIT2 WILD-TYPE" "RIT2 WILD-TYPE" 
    TCGA-55-1592     TCGA-55-1594     TCGA-55-1595     TCGA-55-1596 
"RIT2 WILD-TYPE" "RIT2 WILD-TYPE" "RIT2 WILD-TYPE" "RIT2 WILD-TYPE" 
    TCGA-55-5899     TCGA-55-6543     TCGA-55-6642     TCGA-55-6712 
"RIT2 WILD-TYPE" "RIT2 WILD-TYPE" "RIT2 WILD-TYPE" "RIT2 WILD-TYPE" 
    TCGA-64-1676     TCGA-64-1677     TCGA-64-1678     TCGA-64-1680 
"RIT2 WILD-TYPE" "RIT2 WILD-TYPE" "RIT2 WILD-TYPE" "RIT2 WILD-TYPE" 
    TCGA-64-5774     TCGA-64-5775     TCGA-64-5778     TCGA-64-5779 
"RIT2 WILD-TYPE" "RIT2 WILD-TYPE" "RIT2 WILD-TYPE" "RIT2 WILD-TYPE" 
    TCGA-64-5781     TCGA-64-5815     TCGA-67-3770     TCGA-67-3771 
"RIT2 WILD-TYPE" "RIT2 WILD-TYPE" "RIT2 WILD-TYPE" "RIT2 WILD-TYPE" 
    TCGA-67-3772     TCGA-67-3773     TCGA-67-3774     TCGA-67-6215 
"RIT2 WILD-TYPE" "RIT2 WILD-TYPE" "RIT2 WILD-TYPE" "RIT2 WILD-TYPE" 
    TCGA-67-6216     TCGA-67-6217     TCGA-71-6725     TCGA-73-4658 
"RIT2 WILD-TYPE" "RIT2 WILD-TYPE" "RIT2 WILD-TYPE" "RIT2 WILD-TYPE" 
    TCGA-73-4659     TCGA-73-4662     TCGA-73-4666     TCGA-73-4668 
"RIT2 WILD-TYPE" "RIT2 WILD-TYPE" "RIT2 WILD-TYPE" "RIT2 WILD-TYPE" 
    TCGA-73-4670     TCGA-73-4675     TCGA-73-4676     TCGA-73-4677 
"RIT2 WILD-TYPE" "RIT2 WILD-TYPE" "RIT2 WILD-TYPE" "RIT2 WILD-TYPE" 
    TCGA-91-6828     TCGA-91-6829     TCGA-91-6831     TCGA-91-6835 
"RIT2 WILD-TYPE" "RIT2 WILD-TYPE" "RIT2 WILD-TYPE" "RIT2 WILD-TYPE" 
    TCGA-91-6836 
"RIT2 WILD-TYPE" 
    TCGA-05-4249     TCGA-05-4250     TCGA-05-4382     TCGA-05-4384 
"RIT2 WILD-TYPE" "RIT2 WILD-TYPE" "RIT2 WILD-TYPE" "RIT2 WILD-TYPE" 
    TCGA-05-4390     TCGA-05-4396     TCGA-05-4397     TCGA-05-4398 
"RIT2 WILD-TYPE"   "RIT2 MUTATED" "RIT2 WILD-TYPE" "RIT2 WILD-TYPE" 
    TCGA-05-4402     TCGA-05-4405     TCGA-05-4415     TCGA-05-4417 
"RIT2 WILD-TYPE" "RIT2 WILD-TYPE" "RIT2 WILD-TYPE" "RIT2 WILD-TYPE" 
    TCGA-05-4418     TCGA-05-4420     TCGA-05-4424     TCGA-05-4426 
"RIT2 WILD-TYPE" "RIT2 WILD-TYPE" "RIT2 WILD-TYPE" "RIT2 WILD-TYPE" 
    TCGA-05-4427     TCGA-05-4430     TCGA-05-4432     TCGA-05-4433 
  "RIT2 MUTATED" "RIT2 WILD-TYPE" "RIT2 WILD-TYPE" "RIT2 WILD-TYPE" 
    TCGA-05-4434     TCGA-05-5420     TCGA-05-5423     TCGA-05-5425 
"RIT2 WILD-TYPE" "RIT2 WILD-TYPE" "RIT2 WILD-TYPE" "RIT2 WILD-TYPE" 
    TCGA-05-5429     TCGA-05-5715     TCGA-35-3615     TCGA-35-4122 
"RIT2 WILD-TYPE" "RIT2 WILD-TYPE" "RIT2 WILD-TYPE" "RIT2 WILD-TYPE" 
    TCGA-35-4123     TCGA-35-5375     TCGA-38-4625     TCGA-38-4626 
"RIT2 WILD-TYPE" "RIT2 WILD-TYPE" "RIT2 WILD-TYPE" "RIT2 WILD-TYPE" 
    TCGA-38-4627     TCGA-38-4628     TCGA-38-4629     TCGA-38-4630 
"RIT2 WILD-TYPE" "RIT2 WILD-TYPE" "RIT2 WILD-TYPE" "RIT2 WILD-TYPE" 
    TCGA-38-4631     TCGA-38-4632     TCGA-38-6178     TCGA-44-2655 
"RIT2 WILD-TYPE" "RIT2 WILD-TYPE" "RIT2 WILD-TYPE" "RIT2 WILD-TYPE" 
    TCGA-44-2656     TCGA-44-2657     TCGA-44-2659     TCGA-44-2661 
"RIT2 WILD-TYPE" "RIT2 WILD-TYPE" "RIT2 WILD-TYPE" "RIT2 WILD-TYPE" 
    TCGA-44-2662     TCGA-44-2665     TCGA-44-2666     TCGA-44-2668 
"RIT2 WILD-TYPE" "RIT2 WILD-TYPE" "RIT2 WILD-TYPE" "RIT2 WILD-TYPE" 
    TCGA-44-3396     TCGA-44-3398     TCGA-44-3918     TCGA-44-3919 
"RIT2 WILD-TYPE" "RIT2 WILD-TYPE" "RIT2 WILD-TYPE" "RIT2 WILD-TYPE" 
    TCGA-44-4112     TCGA-44-5643     TCGA-44-5645     TCGA-44-6144 
"RIT2 WILD-TYPE" "RIT2 WILD-TYPE" "RIT2 WILD-TYPE" "RIT2 WILD-TYPE" 
    TCGA-44-6145     TCGA-44-6146     TCGA-44-6147     TCGA-44-6148 
"RIT2 WILD-TYPE" "RIT2 WILD-TYPE" "RIT2 WILD-TYPE" "RIT2 WILD-TYPE" 
    TCGA-44-6774     TCGA-44-6775     TCGA-44-6776     TCGA-44-6777 
"RIT2 WILD-TYPE" "RIT2 WILD-TYPE" "RIT2 WILD-TYPE" "RIT2 WILD-TYPE" 
    TCGA-44-6778     TCGA-44-6779     TCGA-49-4486     TCGA-49-4487 
"RIT2 WILD-TYPE" "RIT2 WILD-TYPE" "RIT2 WILD-TYPE" "RIT2 WILD-TYPE" 
    TCGA-49-4488     TCGA-49-4490     TCGA-49-4494     TCGA-49-4501 
"RIT2 WILD-TYPE" "RIT2 WILD-TYPE" "RIT2 WILD-TYPE" "RIT2 WILD-TYPE" 
    TCGA-49-4505     TCGA-49-4506     TCGA-49-4507     TCGA-49-4510 
"RIT2 WILD-TYPE" "RIT2 WILD-TYPE" "RIT2 WILD-TYPE" "RIT2 WILD-TYPE" 
    TCGA-49-4512     TCGA-49-4514     TCGA-49-6742     TCGA-49-6743 
"RIT2 WILD-TYPE" "RIT2 WILD-TYPE"   "RIT2 MUTATED" "RIT2 WILD-TYPE" 
    TCGA-49-6744     TCGA-49-6745     TCGA-50-5044     TCGA-50-5045 
"RIT2 WILD-TYPE" "RIT2 WILD-TYPE" "RIT2 WILD-TYPE" "RIT2 WILD-TYPE" 
    TCGA-50-5049     TCGA-50-5051     TCGA-50-5055     TCGA-50-5066 
"RIT2 WILD-TYPE" "RIT2 WILD-TYPE" "RIT2 WILD-TYPE" "RIT2 WILD-TYPE" 
    TCGA-50-5068     TCGA-50-5072     TCGA-50-5930     TCGA-50-5931 
"RIT2 WILD-TYPE" "RIT2 WILD-TYPE" "RIT2 WILD-TYPE" "RIT2 WILD-TYPE" 
    TCGA-50-5932     TCGA-50-5933     TCGA-50-5935     TCGA-50-5936 
"RIT2 WILD-TYPE" "RIT2 WILD-TYPE" "RIT2 WILD-TYPE" "RIT2 WILD-TYPE" 
    TCGA-50-5939     TCGA-50-5941     TCGA-50-5942     TCGA-50-5944 
"RIT2 WILD-TYPE" "RIT2 WILD-TYPE" "RIT2 WILD-TYPE" "RIT2 WILD-TYPE" 
    TCGA-50-5946     TCGA-50-6590     TCGA-50-6591     TCGA-50-6592 
"RIT2 WILD-TYPE" "RIT2 WILD-TYPE" "RIT2 WILD-TYPE" "RIT2 WILD-TYPE" 
    TCGA-50-6593     TCGA-50-6594     TCGA-50-6595     TCGA-50-6597 
"RIT2 WILD-TYPE" "RIT2 WILD-TYPE" "RIT2 WILD-TYPE" "RIT2 WILD-TYPE" 
    TCGA-55-1592     TCGA-55-1594     TCGA-55-1595     TCGA-55-1596 
"RIT2 WILD-TYPE" "RIT2 WILD-TYPE" "RIT2 WILD-TYPE" "RIT2 WILD-TYPE" 
    TCGA-55-5899     TCGA-55-6543     TCGA-55-6642     TCGA-55-6712 
"RIT2 WILD-TYPE" "RIT2 WILD-TYPE" "RIT2 WILD-TYPE" "RIT2 WILD-TYPE" 
    TCGA-64-1676     TCGA-64-1677     TCGA-64-1678     TCGA-64-1680 
"RIT2 WILD-TYPE" "RIT2 WILD-TYPE" "RIT2 WILD-TYPE" "RIT2 WILD-TYPE" 
    TCGA-64-5774     TCGA-64-5775     TCGA-64-5778     TCGA-64-5779 
"RIT2 WILD-TYPE" "RIT2 WILD-TYPE" "RIT2 WILD-TYPE" "RIT2 WILD-TYPE" 
    TCGA-64-5781     TCGA-64-5815     TCGA-67-3770     TCGA-67-3771 
"RIT2 WILD-TYPE" "RIT2 WILD-TYPE" "RIT2 WILD-TYPE" "RIT2 WILD-TYPE" 
    TCGA-67-3772     TCGA-67-3773     TCGA-67-3774     TCGA-67-6215 
"RIT2 WILD-TYPE" "RIT2 WILD-TYPE" "RIT2 WILD-TYPE" "RIT2 WILD-TYPE" 
    TCGA-67-6216     TCGA-67-6217     TCGA-71-6725     TCGA-73-4658 
"RIT2 WILD-TYPE" "RIT2 WILD-TYPE" "RIT2 WILD-TYPE" "RIT2 WILD-TYPE" 
    TCGA-73-4659     TCGA-73-4662     TCGA-73-4666     TCGA-73-4668 
"RIT2 WILD-TYPE" "RIT2 WILD-TYPE" "RIT2 WILD-TYPE" "RIT2 WILD-TYPE" 
    TCGA-73-4670     TCGA-73-4675     TCGA-73-4676     TCGA-73-4677 
"RIT2 WILD-TYPE" "RIT2 WILD-TYPE" "RIT2 WILD-TYPE" "RIT2 WILD-TYPE" 
    TCGA-91-6828     TCGA-91-6829     TCGA-91-6831     TCGA-91-6835 
"RIT2 WILD-TYPE" "RIT2 WILD-TYPE" "RIT2 WILD-TYPE" "RIT2 WILD-TYPE" 
    TCGA-91-6836 
"RIT2 WILD-TYPE" 
    TCGA-05-4249     TCGA-05-4250     TCGA-05-4382     TCGA-05-4384 
"RIT2 WILD-TYPE" "RIT2 WILD-TYPE" "RIT2 WILD-TYPE" "RIT2 WILD-TYPE" 
    TCGA-05-4390     TCGA-05-4396     TCGA-05-4397     TCGA-05-4398 
"RIT2 WILD-TYPE"   "RIT2 MUTATED" "RIT2 WILD-TYPE" "RIT2 WILD-TYPE" 
    TCGA-05-4402     TCGA-05-4405     TCGA-05-4415     TCGA-05-4417 
"RIT2 WILD-TYPE" "RIT2 WILD-TYPE" "RIT2 WILD-TYPE" "RIT2 WILD-TYPE" 
    TCGA-05-4418     TCGA-05-4420     TCGA-05-4424     TCGA-05-4426 
"RIT2 WILD-TYPE" "RIT2 WILD-TYPE" "RIT2 WILD-TYPE" "RIT2 WILD-TYPE" 
    TCGA-05-4427     TCGA-05-4430     TCGA-05-4432     TCGA-05-4433 
  "RIT2 MUTATED" "RIT2 WILD-TYPE" "RIT2 WILD-TYPE" "RIT2 WILD-TYPE" 
    TCGA-05-4434     TCGA-05-5420     TCGA-05-5423     TCGA-05-5425 
"RIT2 WILD-TYPE" "RIT2 WILD-TYPE" "RIT2 WILD-TYPE" "RIT2 WILD-TYPE" 
    TCGA-05-5429     TCGA-05-5715     TCGA-35-3615     TCGA-35-4122 
"RIT2 WILD-TYPE" "RIT2 WILD-TYPE" "RIT2 WILD-TYPE" "RIT2 WILD-TYPE" 
    TCGA-35-4123     TCGA-35-5375     TCGA-38-4625     TCGA-38-4626 
"RIT2 WILD-TYPE" "RIT2 WILD-TYPE" "RIT2 WILD-TYPE" "RIT2 WILD-TYPE" 
    TCGA-38-4627     TCGA-38-4628     TCGA-38-4629     TCGA-38-4630 
"RIT2 WILD-TYPE" "RIT2 WILD-TYPE" "RIT2 WILD-TYPE" "RIT2 WILD-TYPE" 
    TCGA-38-4631     TCGA-38-4632     TCGA-38-6178     TCGA-44-2655 
"RIT2 WILD-TYPE" "RIT2 WILD-TYPE" "RIT2 WILD-TYPE" "RIT2 WILD-TYPE" 
    TCGA-44-2656     TCGA-44-2657     TCGA-44-2659     TCGA-44-2661 
"RIT2 WILD-TYPE" "RIT2 WILD-TYPE" "RIT2 WILD-TYPE" "RIT2 WILD-TYPE" 
    TCGA-44-2662     TCGA-44-2665     TCGA-44-2666     TCGA-44-2668 
"RIT2 WILD-TYPE" "RIT2 WILD-TYPE" "RIT2 WILD-TYPE" "RIT2 WILD-TYPE" 
    TCGA-44-3396     TCGA-44-3398     TCGA-44-3918     TCGA-44-3919 
"RIT2 WILD-TYPE" "RIT2 WILD-TYPE" "RIT2 WILD-TYPE" "RIT2 WILD-TYPE" 
    TCGA-44-4112     TCGA-44-5643     TCGA-44-5645     TCGA-44-6144 
"RIT2 WILD-TYPE" "RIT2 WILD-TYPE" "RIT2 WILD-TYPE" "RIT2 WILD-TYPE" 
    TCGA-44-6145     TCGA-44-6146     TCGA-44-6147     TCGA-44-6148 
"RIT2 WILD-TYPE" "RIT2 WILD-TYPE" "RIT2 WILD-TYPE" "RIT2 WILD-TYPE" 
    TCGA-44-6774     TCGA-44-6775     TCGA-44-6776     TCGA-44-6777 
"RIT2 WILD-TYPE" "RIT2 WILD-TYPE" "RIT2 WILD-TYPE" "RIT2 WILD-TYPE" 
    TCGA-44-6778     TCGA-44-6779     TCGA-49-4486     TCGA-49-4487 
"RIT2 WILD-TYPE" "RIT2 WILD-TYPE" "RIT2 WILD-TYPE" "RIT2 WILD-TYPE" 
    TCGA-49-4488     TCGA-49-4490     TCGA-49-4494     TCGA-49-4501 
"RIT2 WILD-TYPE" "RIT2 WILD-TYPE" "RIT2 WILD-TYPE" "RIT2 WILD-TYPE" 
    TCGA-49-4505     TCGA-49-4506     TCGA-49-4507     TCGA-49-4510 
"RIT2 WILD-TYPE" "RIT2 WILD-TYPE" "RIT2 WILD-TYPE" "RIT2 WILD-TYPE" 
    TCGA-49-4512     TCGA-49-4514     TCGA-49-6742     TCGA-49-6743 
"RIT2 WILD-TYPE" "RIT2 WILD-TYPE"   "RIT2 MUTATED" "RIT2 WILD-TYPE" 
    TCGA-49-6744     TCGA-49-6745     TCGA-50-5044     TCGA-50-5045 
"RIT2 WILD-TYPE" "RIT2 WILD-TYPE" "RIT2 WILD-TYPE" "RIT2 WILD-TYPE" 
    TCGA-50-5049     TCGA-50-5051     TCGA-50-5055     TCGA-50-5066 
"RIT2 WILD-TYPE" "RIT2 WILD-TYPE" "RIT2 WILD-TYPE" "RIT2 WILD-TYPE" 
    TCGA-50-5068     TCGA-50-5072     TCGA-50-5930     TCGA-50-5931 
"RIT2 WILD-TYPE" "RIT2 WILD-TYPE" "RIT2 WILD-TYPE" "RIT2 WILD-TYPE" 
    TCGA-50-5932     TCGA-50-5933     TCGA-50-5935     TCGA-50-5936 
"RIT2 WILD-TYPE" "RIT2 WILD-TYPE" "RIT2 WILD-TYPE" "RIT2 WILD-TYPE" 
    TCGA-50-5939     TCGA-50-5941     TCGA-50-5942     TCGA-50-5944 
"RIT2 WILD-TYPE" "RIT2 WILD-TYPE" "RIT2 WILD-TYPE" "RIT2 WILD-TYPE" 
    TCGA-50-5946     TCGA-50-6590     TCGA-50-6591     TCGA-50-6592 
"RIT2 WILD-TYPE" "RIT2 WILD-TYPE" "RIT2 WILD-TYPE" "RIT2 WILD-TYPE" 
    TCGA-50-6593     TCGA-50-6594     TCGA-50-6595     TCGA-50-6597 
"RIT2 WILD-TYPE" "RIT2 WILD-TYPE" "RIT2 WILD-TYPE" "RIT2 WILD-TYPE" 
    TCGA-55-1592     TCGA-55-1594     TCGA-55-1595     TCGA-55-1596 
"RIT2 WILD-TYPE" "RIT2 WILD-TYPE" "RIT2 WILD-TYPE" "RIT2 WILD-TYPE" 
    TCGA-55-5899     TCGA-55-6543     TCGA-55-6642     TCGA-55-6712 
"RIT2 WILD-TYPE" "RIT2 WILD-TYPE" "RIT2 WILD-TYPE" "RIT2 WILD-TYPE" 
    TCGA-64-1676     TCGA-64-1677     TCGA-64-1678     TCGA-64-1680 
"RIT2 WILD-TYPE" "RIT2 WILD-TYPE" "RIT2 WILD-TYPE" "RIT2 WILD-TYPE" 
    TCGA-64-5774     TCGA-64-5775     TCGA-64-5778     TCGA-64-5779 
"RIT2 WILD-TYPE" "RIT2 WILD-TYPE" "RIT2 WILD-TYPE" "RIT2 WILD-TYPE" 
    TCGA-64-5781     TCGA-64-5815     TCGA-67-3770     TCGA-67-3771 
"RIT2 WILD-TYPE" "RIT2 WILD-TYPE" "RIT2 WILD-TYPE" "RIT2 WILD-TYPE" 
    TCGA-67-3772     TCGA-67-3773     TCGA-67-3774     TCGA-67-6215 
"RIT2 WILD-TYPE" "RIT2 WILD-TYPE" "RIT2 WILD-TYPE" "RIT2 WILD-TYPE" 
    TCGA-67-6216     TCGA-67-6217     TCGA-71-6725     TCGA-73-4658 
"RIT2 WILD-TYPE" "RIT2 WILD-TYPE" "RIT2 WILD-TYPE" "RIT2 WILD-TYPE" 
    TCGA-73-4659     TCGA-73-4662     TCGA-73-4666     TCGA-73-4668 
"RIT2 WILD-TYPE" "RIT2 WILD-TYPE" "RIT2 WILD-TYPE" "RIT2 WILD-TYPE" 
    TCGA-73-4670     TCGA-73-4675     TCGA-73-4676     TCGA-73-4677 
"RIT2 WILD-TYPE" "RIT2 WILD-TYPE" "RIT2 WILD-TYPE" "RIT2 WILD-TYPE" 
    TCGA-91-6828     TCGA-91-6829     TCGA-91-6831     TCGA-91-6835 
"RIT2 WILD-TYPE" "RIT2 WILD-TYPE" "RIT2 WILD-TYPE" "RIT2 WILD-TYPE" 
    TCGA-91-6836 
"RIT2 WILD-TYPE" 
[1] "hr=" "1.4"
D172V2, continuous
D172V3, binary
[1] "tbl2"
                cls
clus             [,1] [,2]
  RIT2 MUTATED      1    2
  RIT2 WILD-TYPE   92   77
        clus
vv       RIT2 MUTATED RIT2 WILD-TYPE
  FEMALE            1             92
  MALE              2             77
D172V4, continuous
D172V5, multiclass
D172V6, multiclass
    clus
vv   RIT2 MUTATED RIT2 WILD-TYPE
  T1            0             41
  T2            2            106
  T3            0             14
  T4            1              7
D172V7, multiclass
       clus
vv      RIT2 MUTATED RIT2 WILD-TYPE
  N0               0             95
  N1               3             34
  N2+N3            0             35
D172V8, multiclass
    clus
vv   RIT2 MUTATED RIT2 WILD-TYPE
  M0            2            135
  M1            0              9
  MX            1             21
D172V9, multiclass
     clus
vv    RIT2 MUTATED RIT2 WILD-TYPE
  I              0             88
  II             2             31
  III            1             38
  IV             0              9
D172V10, binary
[1] "tbl2"
                cls
clus             [,1] [,2]
  RIT2 MUTATED      0    3
  RIT2 WILD-TYPE   16  153
     clus
vv    RIT2 MUTATED RIT2 WILD-TYPE
  NO             0             16
  YES            3            153
D172V11, continuous
D172V12, continuous
[1] "Remove cluster labels:" "RIT2 MUTATED"          
clus
  RIT2 MUTATED RIT2 WILD-TYPE 
             2             80 
    TCGA-05-4384     TCGA-05-4390     TCGA-05-4403     TCGA-05-4405 
"RIT2 WILD-TYPE" "RIT2 WILD-TYPE" "RIT2 WILD-TYPE" "RIT2 WILD-TYPE" 
    TCGA-05-4410     TCGA-05-4415     TCGA-05-4417     TCGA-05-4424 
"RIT2 WILD-TYPE" "RIT2 WILD-TYPE" "RIT2 WILD-TYPE" "RIT2 WILD-TYPE" 
    TCGA-05-4433     TCGA-05-5420     TCGA-05-5423     TCGA-05-5425 
"RIT2 WILD-TYPE" "RIT2 WILD-TYPE" "RIT2 WILD-TYPE" "RIT2 WILD-TYPE" 
    TCGA-05-5428     TCGA-35-4122     TCGA-35-4123     TCGA-35-5375 
"RIT2 WILD-TYPE" "RIT2 WILD-TYPE" "RIT2 WILD-TYPE" "RIT2 WILD-TYPE" 
    TCGA-38-4629     TCGA-38-4632     TCGA-44-2655     TCGA-44-2656 
"RIT2 WILD-TYPE" "RIT2 WILD-TYPE" "RIT2 WILD-TYPE" "RIT2 WILD-TYPE" 
    TCGA-44-2657     TCGA-44-2659     TCGA-44-2662     TCGA-44-2668 
"RIT2 WILD-TYPE" "RIT2 WILD-TYPE" "RIT2 WILD-TYPE" "RIT2 WILD-TYPE" 
    TCGA-44-3398     TCGA-44-3918     TCGA-44-4112     TCGA-44-5645 
"RIT2 WILD-TYPE" "RIT2 WILD-TYPE" "RIT2 WILD-TYPE" "RIT2 WILD-TYPE" 
    TCGA-44-6145     TCGA-44-6146     TCGA-44-6147     TCGA-44-6148 
"RIT2 WILD-TYPE" "RIT2 WILD-TYPE" "RIT2 WILD-TYPE" "RIT2 WILD-TYPE" 
    TCGA-44-6775     TCGA-44-6776     TCGA-44-6777     TCGA-44-6778 
"RIT2 WILD-TYPE" "RIT2 WILD-TYPE" "RIT2 WILD-TYPE" "RIT2 WILD-TYPE" 
    TCGA-44-6779     TCGA-49-4486     TCGA-49-4488     TCGA-49-4494 
"RIT2 WILD-TYPE" "RIT2 WILD-TYPE" "RIT2 WILD-TYPE" "RIT2 WILD-TYPE" 
    TCGA-49-4505     TCGA-49-4507     TCGA-50-5051     TCGA-50-5072 
"RIT2 WILD-TYPE" "RIT2 WILD-TYPE" "RIT2 WILD-TYPE" "RIT2 WILD-TYPE" 
    TCGA-50-5939     TCGA-50-5942     TCGA-50-5946     TCGA-50-6590 
"RIT2 WILD-TYPE" "RIT2 WILD-TYPE" "RIT2 WILD-TYPE" "RIT2 WILD-TYPE" 
    TCGA-50-6594     TCGA-50-6595     TCGA-55-1592     TCGA-55-1595 
"RIT2 WILD-TYPE" "RIT2 WILD-TYPE" "RIT2 WILD-TYPE" "RIT2 WILD-TYPE" 
    TCGA-55-6543     TCGA-55-6712     TCGA-64-1678     TCGA-64-1680 
"RIT2 WILD-TYPE" "RIT2 WILD-TYPE" "RIT2 WILD-TYPE" "RIT2 WILD-TYPE" 
    TCGA-64-5774     TCGA-64-5778     TCGA-64-5779     TCGA-64-5781 
"RIT2 WILD-TYPE" "RIT2 WILD-TYPE" "RIT2 WILD-TYPE" "RIT2 WILD-TYPE" 
    TCGA-64-5815     TCGA-67-6217     TCGA-73-4659     TCGA-73-4662 
"RIT2 WILD-TYPE" "RIT2 WILD-TYPE" "RIT2 WILD-TYPE" "RIT2 WILD-TYPE" 
    TCGA-73-4666     TCGA-73-4668     TCGA-73-4670     TCGA-73-4675 
"RIT2 WILD-TYPE" "RIT2 WILD-TYPE" "RIT2 WILD-TYPE" "RIT2 WILD-TYPE" 
    TCGA-73-4676     TCGA-73-4677     TCGA-75-5122     TCGA-75-5125 
"RIT2 WILD-TYPE" "RIT2 WILD-TYPE" "RIT2 WILD-TYPE" "RIT2 WILD-TYPE" 
    TCGA-75-5126     TCGA-75-5146     TCGA-75-6206     TCGA-75-6207 
"RIT2 WILD-TYPE" "RIT2 WILD-TYPE" "RIT2 WILD-TYPE" "RIT2 WILD-TYPE" 
    TCGA-80-5611     TCGA-91-6828     TCGA-91-6829     TCGA-91-6835 
"RIT2 WILD-TYPE" "RIT2 WILD-TYPE" "RIT2 WILD-TYPE" "RIT2 WILD-TYPE" 
D172V13, multiclass
                                             clus
vv                                            RIT2 MUTATED RIT2 WILD-TYPE
  CURRENT REFORMED SMOKER FOR < OR = 15 YEARS            1             61
  CURRENT REFORMED SMOKER FOR > 15 YEARS                 2             44
  CURRENT SMOKER                                         0             28
  LIFELONG NON-SMOKER                                    0             24
D172V14, continuous
[1] "Remove cluster labels:" "RIT2 MUTATED"          
clus
  RIT2 MUTATED RIT2 WILD-TYPE 
             2             66 
    TCGA-05-4384     TCGA-05-4390     TCGA-05-4405     TCGA-05-4410 
"RIT2 WILD-TYPE" "RIT2 WILD-TYPE" "RIT2 WILD-TYPE" "RIT2 WILD-TYPE" 
    TCGA-05-4415     TCGA-05-4417     TCGA-05-4424     TCGA-05-4433 
"RIT2 WILD-TYPE" "RIT2 WILD-TYPE" "RIT2 WILD-TYPE" "RIT2 WILD-TYPE" 
    TCGA-05-5420     TCGA-05-5423     TCGA-05-5425     TCGA-05-5428 
"RIT2 WILD-TYPE" "RIT2 WILD-TYPE" "RIT2 WILD-TYPE" "RIT2 WILD-TYPE" 
    TCGA-35-4122     TCGA-35-4123     TCGA-35-5375     TCGA-38-4625 
"RIT2 WILD-TYPE" "RIT2 WILD-TYPE" "RIT2 WILD-TYPE" "RIT2 WILD-TYPE" 
    TCGA-38-4626     TCGA-44-2655     TCGA-44-2656     TCGA-44-2657 
"RIT2 WILD-TYPE" "RIT2 WILD-TYPE" "RIT2 WILD-TYPE" "RIT2 WILD-TYPE" 
    TCGA-44-2659     TCGA-44-2662     TCGA-44-2666     TCGA-44-2668 
"RIT2 WILD-TYPE" "RIT2 WILD-TYPE" "RIT2 WILD-TYPE" "RIT2 WILD-TYPE" 
    TCGA-44-3396     TCGA-44-3398     TCGA-44-3918     TCGA-44-4112 
"RIT2 WILD-TYPE" "RIT2 WILD-TYPE" "RIT2 WILD-TYPE" "RIT2 WILD-TYPE" 
    TCGA-44-5645     TCGA-44-6144     TCGA-44-6145     TCGA-44-6147 
"RIT2 WILD-TYPE" "RIT2 WILD-TYPE" "RIT2 WILD-TYPE" "RIT2 WILD-TYPE" 
    TCGA-44-6148     TCGA-44-6774     TCGA-44-6775     TCGA-44-6776 
"RIT2 WILD-TYPE" "RIT2 WILD-TYPE" "RIT2 WILD-TYPE" "RIT2 WILD-TYPE" 
    TCGA-44-6777     TCGA-44-6778     TCGA-44-6779     TCGA-49-4486 
"RIT2 WILD-TYPE" "RIT2 WILD-TYPE" "RIT2 WILD-TYPE" "RIT2 WILD-TYPE" 
    TCGA-49-4494     TCGA-49-4505     TCGA-55-1592     TCGA-55-1594 
"RIT2 WILD-TYPE" "RIT2 WILD-TYPE" "RIT2 WILD-TYPE" "RIT2 WILD-TYPE" 
    TCGA-55-1595     TCGA-55-1596     TCGA-55-5899     TCGA-55-6642 
"RIT2 WILD-TYPE" "RIT2 WILD-TYPE" "RIT2 WILD-TYPE" "RIT2 WILD-TYPE" 
    TCGA-55-6712     TCGA-64-1677     TCGA-64-1678     TCGA-64-1680 
"RIT2 WILD-TYPE" "RIT2 WILD-TYPE" "RIT2 WILD-TYPE" "RIT2 WILD-TYPE" 
    TCGA-64-5774     TCGA-64-5775     TCGA-64-5778     TCGA-64-5779 
"RIT2 WILD-TYPE" "RIT2 WILD-TYPE" "RIT2 WILD-TYPE" "RIT2 WILD-TYPE" 
    TCGA-64-5781     TCGA-73-4659     TCGA-73-4662     TCGA-73-4666 
"RIT2 WILD-TYPE" "RIT2 WILD-TYPE" "RIT2 WILD-TYPE" "RIT2 WILD-TYPE" 
    TCGA-73-4668     TCGA-73-4670     TCGA-73-4675     TCGA-73-4676 
"RIT2 WILD-TYPE" "RIT2 WILD-TYPE" "RIT2 WILD-TYPE" "RIT2 WILD-TYPE" 
    TCGA-91-6829     TCGA-91-6836 
"RIT2 WILD-TYPE" "RIT2 WILD-TYPE" 

Clustering(173) Variable = FCGR3A MUTATION ANALYSIS
D173V1, survival
                  sevent
clus2               0  1
  FCGR3A MUTATED    2  2
  FCGR3A WILD-TYPE 97 48
  FCGR3A MUTATED FCGR3A WILD-TYPE 
               4              145 
  FCGR3A MUTATED FCGR3A WILD-TYPE 
               2               48 
$`FCGR3A MUTATED`
TCGA-05-4424 TCGA-38-4632 TCGA-49-4507 TCGA-91-6836 
       30.02        44.61         8.81         0.36 

$`FCGR3A WILD-TYPE`
TCGA-05-4249 TCGA-05-4250 TCGA-05-4382 TCGA-05-4384 TCGA-05-4390 TCGA-05-4396 
       38.07         3.98        19.92        14.01        37.02         9.96 
TCGA-05-4397 TCGA-05-4398 TCGA-05-4402 TCGA-05-4405 TCGA-05-4415 TCGA-05-4417 
       24.03        47.05         8.02        20.05         2.96        14.93 
TCGA-05-4418 TCGA-05-4420 TCGA-05-4426 TCGA-05-4427 TCGA-05-4430 TCGA-05-4432 
        8.98        29.95        26.01        26.01        25.02        25.02 
TCGA-05-4433 TCGA-05-4434 TCGA-05-5420 TCGA-05-5423 TCGA-05-5425 TCGA-05-5429 
       24.00        15.02         1.02         4.96         2.96         0.99 
TCGA-05-5715 TCGA-35-3615 TCGA-35-4122 TCGA-35-4123 TCGA-35-5375 TCGA-38-4625 
        2.04         0.46         7.36         5.95         8.68        47.61 
TCGA-38-4626 TCGA-38-4627 TCGA-38-4628 TCGA-38-4629 TCGA-38-4630 TCGA-38-4631 
       85.32        37.71        49.02        28.37        35.28        11.64 
TCGA-38-6178 TCGA-44-2655 TCGA-44-2656 TCGA-44-2657 TCGA-44-2659 TCGA-44-2661 
        5.19        18.87        19.10        13.15        17.39         3.39 
TCGA-44-2662 TCGA-44-2665 TCGA-44-2666 TCGA-44-2668 TCGA-44-3396 TCGA-44-3398 
       15.78        13.15         3.19         8.09        10.22         8.32 
TCGA-44-3918 TCGA-44-3919 TCGA-44-4112 TCGA-44-5643 TCGA-44-5645 TCGA-44-6144 
        6.44         6.21         4.60         3.48         6.84         0.30 
TCGA-44-6145 TCGA-44-6146 TCGA-44-6147 TCGA-44-6148 TCGA-44-6774 TCGA-44-6775 
        3.35         9.93         7.76         3.12         5.42         2.70 
TCGA-44-6776 TCGA-44-6777 TCGA-44-6778 TCGA-44-6779 TCGA-49-4486 TCGA-49-4487 
       63.72        32.45        36.49        16.41        76.21        28.11 
TCGA-49-4488 TCGA-49-4490 TCGA-49-4494 TCGA-49-4501 TCGA-49-4505 TCGA-49-4506 
       28.57        12.66        35.54        46.72        14.07        32.84 
TCGA-49-4510 TCGA-49-4512 TCGA-49-4514 TCGA-49-6742 TCGA-49-6743 TCGA-49-6744 
       29.46        29.75        43.20        15.02        12.13        12.99 
TCGA-49-6745 TCGA-50-5044 TCGA-50-5045 TCGA-50-5049 TCGA-50-5051 TCGA-50-5055 
        4.93        20.48        71.47        48.82        14.96        25.81 
TCGA-50-5066 TCGA-50-5068 TCGA-50-5072 TCGA-50-5930 TCGA-50-5931 TCGA-50-5932 
        9.76        49.28         8.05         9.27         8.78        35.87 
TCGA-50-5933 TCGA-50-5935 TCGA-50-5936 TCGA-50-5939 TCGA-50-5941 TCGA-50-5942 
       77.88        21.47         8.45        15.12         9.37         4.44 
TCGA-50-5944 TCGA-50-5946 TCGA-50-6590 TCGA-50-6591 TCGA-50-6592 TCGA-50-6593 
       12.26        11.47        42.31         3.88        25.51        11.05 
TCGA-50-6594 TCGA-50-6595 TCGA-50-6597 TCGA-55-1592 TCGA-55-1594 TCGA-55-1595 
       12.16         6.21        33.37        23.05        38.73        48.62 
TCGA-55-1596 TCGA-55-5899 TCGA-55-6543 TCGA-55-6642 TCGA-55-6712 TCGA-64-1676 
       45.17         2.86         0.07        32.61         0.79        56.81 
TCGA-64-1677 TCGA-64-1678 TCGA-64-1680 TCGA-64-5774 TCGA-64-5775 TCGA-64-5778 
       20.65        39.09        37.02        83.84         0.10        30.44 
TCGA-64-5779 TCGA-64-5781 TCGA-64-5815 TCGA-67-3770 TCGA-67-3771 TCGA-67-3772 
       16.67        39.52         7.33         0.99         1.97         0.59 
TCGA-67-3773 TCGA-67-3774 TCGA-67-6215 TCGA-67-6216 TCGA-67-6217 TCGA-71-6725 
        2.04         0.59         0.89         0.69        13.87         2.01 
TCGA-73-4658 TCGA-73-4659 TCGA-73-4662 TCGA-73-4666 TCGA-73-4668 TCGA-73-4670 
       52.57        23.38        29.95        20.28        15.35         0.46 
TCGA-73-4675 TCGA-73-4676 TCGA-73-4677 TCGA-91-6828 TCGA-91-6829 TCGA-91-6831 
        1.32         4.01         1.25         1.22        41.33         1.28 
TCGA-91-6835 
        1.15 

  FCGR3A MUTATED FCGR3A WILD-TYPE 
            0.36             0.07 
  FCGR3A MUTATED FCGR3A WILD-TYPE 
           44.61            85.32 
  FCGR3A MUTATED FCGR3A WILD-TYPE 
          19.415           13.870 
[1] "0.4 - 44.6 (19.4)" "0.1 - 85.3 (13.9)"
      TCGA-05-4249       TCGA-05-4250       TCGA-05-4382       TCGA-05-4384 
"FCGR3A WILD-TYPE" "FCGR3A WILD-TYPE" "FCGR3A WILD-TYPE" "FCGR3A WILD-TYPE" 
      TCGA-05-4390       TCGA-05-4396       TCGA-05-4397       TCGA-05-4398 
"FCGR3A WILD-TYPE" "FCGR3A WILD-TYPE" "FCGR3A WILD-TYPE" "FCGR3A WILD-TYPE" 
      TCGA-05-4402       TCGA-05-4405       TCGA-05-4415       TCGA-05-4417 
"FCGR3A WILD-TYPE" "FCGR3A WILD-TYPE" "FCGR3A WILD-TYPE" "FCGR3A WILD-TYPE" 
      TCGA-05-4418       TCGA-05-4420       TCGA-05-4424       TCGA-05-4426 
"FCGR3A WILD-TYPE" "FCGR3A WILD-TYPE"   "FCGR3A MUTATED" "FCGR3A WILD-TYPE" 
      TCGA-05-4427       TCGA-05-4430       TCGA-05-4432       TCGA-05-4433 
"FCGR3A WILD-TYPE" "FCGR3A WILD-TYPE" "FCGR3A WILD-TYPE" "FCGR3A WILD-TYPE" 
      TCGA-05-4434       TCGA-05-5420       TCGA-05-5423       TCGA-05-5425 
"FCGR3A WILD-TYPE" "FCGR3A WILD-TYPE" "FCGR3A WILD-TYPE" "FCGR3A WILD-TYPE" 
      TCGA-05-5429       TCGA-05-5715       TCGA-35-3615       TCGA-35-4122 
"FCGR3A WILD-TYPE" "FCGR3A WILD-TYPE" "FCGR3A WILD-TYPE" "FCGR3A WILD-TYPE" 
      TCGA-35-4123       TCGA-35-5375       TCGA-38-4625       TCGA-38-4626 
"FCGR3A WILD-TYPE" "FCGR3A WILD-TYPE" "FCGR3A WILD-TYPE" "FCGR3A WILD-TYPE" 
      TCGA-38-4627       TCGA-38-4628       TCGA-38-4629       TCGA-38-4630 
"FCGR3A WILD-TYPE" "FCGR3A WILD-TYPE" "FCGR3A WILD-TYPE" "FCGR3A WILD-TYPE" 
      TCGA-38-4631       TCGA-38-4632       TCGA-38-6178       TCGA-44-2655 
"FCGR3A WILD-TYPE"   "FCGR3A MUTATED" "FCGR3A WILD-TYPE" "FCGR3A WILD-TYPE" 
      TCGA-44-2656       TCGA-44-2657       TCGA-44-2659       TCGA-44-2661 
"FCGR3A WILD-TYPE" "FCGR3A WILD-TYPE" "FCGR3A WILD-TYPE" "FCGR3A WILD-TYPE" 
      TCGA-44-2662       TCGA-44-2665       TCGA-44-2666       TCGA-44-2668 
"FCGR3A WILD-TYPE" "FCGR3A WILD-TYPE" "FCGR3A WILD-TYPE" "FCGR3A WILD-TYPE" 
      TCGA-44-3396       TCGA-44-3398       TCGA-44-3918       TCGA-44-3919 
"FCGR3A WILD-TYPE" "FCGR3A WILD-TYPE" "FCGR3A WILD-TYPE" "FCGR3A WILD-TYPE" 
      TCGA-44-4112       TCGA-44-5643       TCGA-44-5645       TCGA-44-6144 
"FCGR3A WILD-TYPE" "FCGR3A WILD-TYPE" "FCGR3A WILD-TYPE" "FCGR3A WILD-TYPE" 
      TCGA-44-6145       TCGA-44-6146       TCGA-44-6147       TCGA-44-6148 
"FCGR3A WILD-TYPE" "FCGR3A WILD-TYPE" "FCGR3A WILD-TYPE" "FCGR3A WILD-TYPE" 
      TCGA-44-6774       TCGA-44-6775       TCGA-44-6776       TCGA-44-6777 
"FCGR3A WILD-TYPE" "FCGR3A WILD-TYPE" "FCGR3A WILD-TYPE" "FCGR3A WILD-TYPE" 
      TCGA-44-6778       TCGA-44-6779       TCGA-49-4486       TCGA-49-4487 
"FCGR3A WILD-TYPE" "FCGR3A WILD-TYPE" "FCGR3A WILD-TYPE" "FCGR3A WILD-TYPE" 
      TCGA-49-4488       TCGA-49-4490       TCGA-49-4494       TCGA-49-4501 
"FCGR3A WILD-TYPE" "FCGR3A WILD-TYPE" "FCGR3A WILD-TYPE" "FCGR3A WILD-TYPE" 
      TCGA-49-4505       TCGA-49-4506       TCGA-49-4507       TCGA-49-4510 
"FCGR3A WILD-TYPE" "FCGR3A WILD-TYPE"   "FCGR3A MUTATED" "FCGR3A WILD-TYPE" 
      TCGA-49-4512       TCGA-49-4514       TCGA-49-6742       TCGA-49-6743 
"FCGR3A WILD-TYPE" "FCGR3A WILD-TYPE" "FCGR3A WILD-TYPE" "FCGR3A WILD-TYPE" 
      TCGA-49-6744       TCGA-49-6745       TCGA-50-5044       TCGA-50-5045 
"FCGR3A WILD-TYPE" "FCGR3A WILD-TYPE" "FCGR3A WILD-TYPE" "FCGR3A WILD-TYPE" 
      TCGA-50-5049       TCGA-50-5051       TCGA-50-5055       TCGA-50-5066 
"FCGR3A WILD-TYPE" "FCGR3A WILD-TYPE" "FCGR3A WILD-TYPE" "FCGR3A WILD-TYPE" 
      TCGA-50-5068       TCGA-50-5072       TCGA-50-5930       TCGA-50-5931 
"FCGR3A WILD-TYPE" "FCGR3A WILD-TYPE" "FCGR3A WILD-TYPE" "FCGR3A WILD-TYPE" 
      TCGA-50-5932       TCGA-50-5933       TCGA-50-5935       TCGA-50-5936 
"FCGR3A WILD-TYPE" "FCGR3A WILD-TYPE" "FCGR3A WILD-TYPE" "FCGR3A WILD-TYPE" 
      TCGA-50-5939       TCGA-50-5941       TCGA-50-5942       TCGA-50-5944 
"FCGR3A WILD-TYPE" "FCGR3A WILD-TYPE" "FCGR3A WILD-TYPE" "FCGR3A WILD-TYPE" 
      TCGA-50-5946       TCGA-50-6590       TCGA-50-6591       TCGA-50-6592 
"FCGR3A WILD-TYPE" "FCGR3A WILD-TYPE" "FCGR3A WILD-TYPE" "FCGR3A WILD-TYPE" 
      TCGA-50-6593       TCGA-50-6594       TCGA-50-6595       TCGA-50-6597 
"FCGR3A WILD-TYPE" "FCGR3A WILD-TYPE" "FCGR3A WILD-TYPE" "FCGR3A WILD-TYPE" 
      TCGA-55-1592       TCGA-55-1594       TCGA-55-1595       TCGA-55-1596 
"FCGR3A WILD-TYPE" "FCGR3A WILD-TYPE" "FCGR3A WILD-TYPE" "FCGR3A WILD-TYPE" 
      TCGA-55-5899       TCGA-55-6543       TCGA-55-6642       TCGA-55-6712 
"FCGR3A WILD-TYPE" "FCGR3A WILD-TYPE" "FCGR3A WILD-TYPE" "FCGR3A WILD-TYPE" 
      TCGA-64-1676       TCGA-64-1677       TCGA-64-1678       TCGA-64-1680 
"FCGR3A WILD-TYPE" "FCGR3A WILD-TYPE" "FCGR3A WILD-TYPE" "FCGR3A WILD-TYPE" 
      TCGA-64-5774       TCGA-64-5775       TCGA-64-5778       TCGA-64-5779 
"FCGR3A WILD-TYPE" "FCGR3A WILD-TYPE" "FCGR3A WILD-TYPE" "FCGR3A WILD-TYPE" 
      TCGA-64-5781       TCGA-64-5815       TCGA-67-3770       TCGA-67-3771 
"FCGR3A WILD-TYPE" "FCGR3A WILD-TYPE" "FCGR3A WILD-TYPE" "FCGR3A WILD-TYPE" 
      TCGA-67-3772       TCGA-67-3773       TCGA-67-3774       TCGA-67-6215 
"FCGR3A WILD-TYPE" "FCGR3A WILD-TYPE" "FCGR3A WILD-TYPE" "FCGR3A WILD-TYPE" 
      TCGA-67-6216       TCGA-67-6217       TCGA-71-6725       TCGA-73-4658 
"FCGR3A WILD-TYPE" "FCGR3A WILD-TYPE" "FCGR3A WILD-TYPE" "FCGR3A WILD-TYPE" 
      TCGA-73-4659       TCGA-73-4662       TCGA-73-4666       TCGA-73-4668 
"FCGR3A WILD-TYPE" "FCGR3A WILD-TYPE" "FCGR3A WILD-TYPE" "FCGR3A WILD-TYPE" 
      TCGA-73-4670       TCGA-73-4675       TCGA-73-4676       TCGA-73-4677 
"FCGR3A WILD-TYPE" "FCGR3A WILD-TYPE" "FCGR3A WILD-TYPE" "FCGR3A WILD-TYPE" 
      TCGA-91-6828       TCGA-91-6829       TCGA-91-6831       TCGA-91-6835 
"FCGR3A WILD-TYPE" "FCGR3A WILD-TYPE" "FCGR3A WILD-TYPE" "FCGR3A WILD-TYPE" 
      TCGA-91-6836 
  "FCGR3A MUTATED" 
      TCGA-05-4249       TCGA-05-4250       TCGA-05-4382       TCGA-05-4384 
"FCGR3A WILD-TYPE" "FCGR3A WILD-TYPE" "FCGR3A WILD-TYPE" "FCGR3A WILD-TYPE" 
      TCGA-05-4390       TCGA-05-4396       TCGA-05-4397       TCGA-05-4398 
"FCGR3A WILD-TYPE" "FCGR3A WILD-TYPE" "FCGR3A WILD-TYPE" "FCGR3A WILD-TYPE" 
      TCGA-05-4402       TCGA-05-4405       TCGA-05-4415       TCGA-05-4417 
"FCGR3A WILD-TYPE" "FCGR3A WILD-TYPE" "FCGR3A WILD-TYPE" "FCGR3A WILD-TYPE" 
      TCGA-05-4418       TCGA-05-4420       TCGA-05-4424       TCGA-05-4426 
"FCGR3A WILD-TYPE" "FCGR3A WILD-TYPE"   "FCGR3A MUTATED" "FCGR3A WILD-TYPE" 
      TCGA-05-4427       TCGA-05-4430       TCGA-05-4432       TCGA-05-4433 
"FCGR3A WILD-TYPE" "FCGR3A WILD-TYPE" "FCGR3A WILD-TYPE" "FCGR3A WILD-TYPE" 
      TCGA-05-4434       TCGA-05-5420       TCGA-05-5423       TCGA-05-5425 
"FCGR3A WILD-TYPE" "FCGR3A WILD-TYPE" "FCGR3A WILD-TYPE" "FCGR3A WILD-TYPE" 
      TCGA-05-5429       TCGA-05-5715       TCGA-35-3615       TCGA-35-4122 
"FCGR3A WILD-TYPE" "FCGR3A WILD-TYPE" "FCGR3A WILD-TYPE" "FCGR3A WILD-TYPE" 
      TCGA-35-4123       TCGA-35-5375       TCGA-38-4625       TCGA-38-4626 
"FCGR3A WILD-TYPE" "FCGR3A WILD-TYPE" "FCGR3A WILD-TYPE" "FCGR3A WILD-TYPE" 
      TCGA-38-4627       TCGA-38-4628       TCGA-38-4629       TCGA-38-4630 
"FCGR3A WILD-TYPE" "FCGR3A WILD-TYPE" "FCGR3A WILD-TYPE" "FCGR3A WILD-TYPE" 
      TCGA-38-4631       TCGA-38-4632       TCGA-38-6178       TCGA-44-2655 
"FCGR3A WILD-TYPE"   "FCGR3A MUTATED" "FCGR3A WILD-TYPE" "FCGR3A WILD-TYPE" 
      TCGA-44-2656       TCGA-44-2657       TCGA-44-2659       TCGA-44-2661 
"FCGR3A WILD-TYPE" "FCGR3A WILD-TYPE" "FCGR3A WILD-TYPE" "FCGR3A WILD-TYPE" 
      TCGA-44-2662       TCGA-44-2665       TCGA-44-2666       TCGA-44-2668 
"FCGR3A WILD-TYPE" "FCGR3A WILD-TYPE" "FCGR3A WILD-TYPE" "FCGR3A WILD-TYPE" 
      TCGA-44-3396       TCGA-44-3398       TCGA-44-3918       TCGA-44-3919 
"FCGR3A WILD-TYPE" "FCGR3A WILD-TYPE" "FCGR3A WILD-TYPE" "FCGR3A WILD-TYPE" 
      TCGA-44-4112       TCGA-44-5643       TCGA-44-5645       TCGA-44-6144 
"FCGR3A WILD-TYPE" "FCGR3A WILD-TYPE" "FCGR3A WILD-TYPE" "FCGR3A WILD-TYPE" 
      TCGA-44-6145       TCGA-44-6146       TCGA-44-6147       TCGA-44-6148 
"FCGR3A WILD-TYPE" "FCGR3A WILD-TYPE" "FCGR3A WILD-TYPE" "FCGR3A WILD-TYPE" 
      TCGA-44-6774       TCGA-44-6775       TCGA-44-6776       TCGA-44-6777 
"FCGR3A WILD-TYPE" "FCGR3A WILD-TYPE" "FCGR3A WILD-TYPE" "FCGR3A WILD-TYPE" 
      TCGA-44-6778       TCGA-44-6779       TCGA-49-4486       TCGA-49-4487 
"FCGR3A WILD-TYPE" "FCGR3A WILD-TYPE" "FCGR3A WILD-TYPE" "FCGR3A WILD-TYPE" 
      TCGA-49-4488       TCGA-49-4490       TCGA-49-4494       TCGA-49-4501 
"FCGR3A WILD-TYPE" "FCGR3A WILD-TYPE" "FCGR3A WILD-TYPE" "FCGR3A WILD-TYPE" 
      TCGA-49-4505       TCGA-49-4506       TCGA-49-4507       TCGA-49-4510 
"FCGR3A WILD-TYPE" "FCGR3A WILD-TYPE"   "FCGR3A MUTATED" "FCGR3A WILD-TYPE" 
      TCGA-49-4512       TCGA-49-4514       TCGA-49-6742       TCGA-49-6743 
"FCGR3A WILD-TYPE" "FCGR3A WILD-TYPE" "FCGR3A WILD-TYPE" "FCGR3A WILD-TYPE" 
      TCGA-49-6744       TCGA-49-6745       TCGA-50-5044       TCGA-50-5045 
"FCGR3A WILD-TYPE" "FCGR3A WILD-TYPE" "FCGR3A WILD-TYPE" "FCGR3A WILD-TYPE" 
      TCGA-50-5049       TCGA-50-5051       TCGA-50-5055       TCGA-50-5066 
"FCGR3A WILD-TYPE" "FCGR3A WILD-TYPE" "FCGR3A WILD-TYPE" "FCGR3A WILD-TYPE" 
      TCGA-50-5068       TCGA-50-5072       TCGA-50-5930       TCGA-50-5931 
"FCGR3A WILD-TYPE" "FCGR3A WILD-TYPE" "FCGR3A WILD-TYPE" "FCGR3A WILD-TYPE" 
      TCGA-50-5932       TCGA-50-5933       TCGA-50-5935       TCGA-50-5936 
"FCGR3A WILD-TYPE" "FCGR3A WILD-TYPE" "FCGR3A WILD-TYPE" "FCGR3A WILD-TYPE" 
      TCGA-50-5939       TCGA-50-5941       TCGA-50-5942       TCGA-50-5944 
"FCGR3A WILD-TYPE" "FCGR3A WILD-TYPE" "FCGR3A WILD-TYPE" "FCGR3A WILD-TYPE" 
      TCGA-50-5946       TCGA-50-6590       TCGA-50-6591       TCGA-50-6592 
"FCGR3A WILD-TYPE" "FCGR3A WILD-TYPE" "FCGR3A WILD-TYPE" "FCGR3A WILD-TYPE" 
      TCGA-50-6593       TCGA-50-6594       TCGA-50-6595       TCGA-50-6597 
"FCGR3A WILD-TYPE" "FCGR3A WILD-TYPE" "FCGR3A WILD-TYPE" "FCGR3A WILD-TYPE" 
      TCGA-55-1592       TCGA-55-1594       TCGA-55-1595       TCGA-55-1596 
"FCGR3A WILD-TYPE" "FCGR3A WILD-TYPE" "FCGR3A WILD-TYPE" "FCGR3A WILD-TYPE" 
      TCGA-55-5899       TCGA-55-6543       TCGA-55-6642       TCGA-55-6712 
"FCGR3A WILD-TYPE" "FCGR3A WILD-TYPE" "FCGR3A WILD-TYPE" "FCGR3A WILD-TYPE" 
      TCGA-64-1676       TCGA-64-1677       TCGA-64-1678       TCGA-64-1680 
"FCGR3A WILD-TYPE" "FCGR3A WILD-TYPE" "FCGR3A WILD-TYPE" "FCGR3A WILD-TYPE" 
      TCGA-64-5774       TCGA-64-5775       TCGA-64-5778       TCGA-64-5779 
"FCGR3A WILD-TYPE" "FCGR3A WILD-TYPE" "FCGR3A WILD-TYPE" "FCGR3A WILD-TYPE" 
      TCGA-64-5781       TCGA-64-5815       TCGA-67-3770       TCGA-67-3771 
"FCGR3A WILD-TYPE" "FCGR3A WILD-TYPE" "FCGR3A WILD-TYPE" "FCGR3A WILD-TYPE" 
      TCGA-67-3772       TCGA-67-3773       TCGA-67-3774       TCGA-67-6215 
"FCGR3A WILD-TYPE" "FCGR3A WILD-TYPE" "FCGR3A WILD-TYPE" "FCGR3A WILD-TYPE" 
      TCGA-67-6216       TCGA-67-6217       TCGA-71-6725       TCGA-73-4658 
"FCGR3A WILD-TYPE" "FCGR3A WILD-TYPE" "FCGR3A WILD-TYPE" "FCGR3A WILD-TYPE" 
      TCGA-73-4659       TCGA-73-4662       TCGA-73-4666       TCGA-73-4668 
"FCGR3A WILD-TYPE" "FCGR3A WILD-TYPE" "FCGR3A WILD-TYPE" "FCGR3A WILD-TYPE" 
      TCGA-73-4670       TCGA-73-4675       TCGA-73-4676       TCGA-73-4677 
"FCGR3A WILD-TYPE" "FCGR3A WILD-TYPE" "FCGR3A WILD-TYPE" "FCGR3A WILD-TYPE" 
      TCGA-91-6828       TCGA-91-6829       TCGA-91-6831       TCGA-91-6835 
"FCGR3A WILD-TYPE" "FCGR3A WILD-TYPE" "FCGR3A WILD-TYPE" "FCGR3A WILD-TYPE" 
      TCGA-91-6836 
  "FCGR3A MUTATED" 
      TCGA-05-4249       TCGA-05-4250       TCGA-05-4382       TCGA-05-4384 
"FCGR3A WILD-TYPE" "FCGR3A WILD-TYPE" "FCGR3A WILD-TYPE" "FCGR3A WILD-TYPE" 
      TCGA-05-4390       TCGA-05-4396       TCGA-05-4397       TCGA-05-4398 
"FCGR3A WILD-TYPE" "FCGR3A WILD-TYPE" "FCGR3A WILD-TYPE" "FCGR3A WILD-TYPE" 
      TCGA-05-4402       TCGA-05-4405       TCGA-05-4415       TCGA-05-4417 
"FCGR3A WILD-TYPE" "FCGR3A WILD-TYPE" "FCGR3A WILD-TYPE" "FCGR3A WILD-TYPE" 
      TCGA-05-4418       TCGA-05-4420       TCGA-05-4424       TCGA-05-4426 
"FCGR3A WILD-TYPE" "FCGR3A WILD-TYPE"   "FCGR3A MUTATED" "FCGR3A WILD-TYPE" 
      TCGA-05-4427       TCGA-05-4430       TCGA-05-4432       TCGA-05-4433 
"FCGR3A WILD-TYPE" "FCGR3A WILD-TYPE" "FCGR3A WILD-TYPE" "FCGR3A WILD-TYPE" 
      TCGA-05-4434       TCGA-05-5420       TCGA-05-5423       TCGA-05-5425 
"FCGR3A WILD-TYPE" "FCGR3A WILD-TYPE" "FCGR3A WILD-TYPE" "FCGR3A WILD-TYPE" 
      TCGA-05-5429       TCGA-05-5715       TCGA-35-3615       TCGA-35-4122 
"FCGR3A WILD-TYPE" "FCGR3A WILD-TYPE" "FCGR3A WILD-TYPE" "FCGR3A WILD-TYPE" 
      TCGA-35-4123       TCGA-35-5375       TCGA-38-4625       TCGA-38-4626 
"FCGR3A WILD-TYPE" "FCGR3A WILD-TYPE" "FCGR3A WILD-TYPE" "FCGR3A WILD-TYPE" 
      TCGA-38-4627       TCGA-38-4628       TCGA-38-4629       TCGA-38-4630 
"FCGR3A WILD-TYPE" "FCGR3A WILD-TYPE" "FCGR3A WILD-TYPE" "FCGR3A WILD-TYPE" 
      TCGA-38-4631       TCGA-38-4632       TCGA-38-6178       TCGA-44-2655 
"FCGR3A WILD-TYPE"   "FCGR3A MUTATED" "FCGR3A WILD-TYPE" "FCGR3A WILD-TYPE" 
      TCGA-44-2656       TCGA-44-2657       TCGA-44-2659       TCGA-44-2661 
"FCGR3A WILD-TYPE" "FCGR3A WILD-TYPE" "FCGR3A WILD-TYPE" "FCGR3A WILD-TYPE" 
      TCGA-44-2662       TCGA-44-2665       TCGA-44-2666       TCGA-44-2668 
"FCGR3A WILD-TYPE" "FCGR3A WILD-TYPE" "FCGR3A WILD-TYPE" "FCGR3A WILD-TYPE" 
      TCGA-44-3396       TCGA-44-3398       TCGA-44-3918       TCGA-44-3919 
"FCGR3A WILD-TYPE" "FCGR3A WILD-TYPE" "FCGR3A WILD-TYPE" "FCGR3A WILD-TYPE" 
      TCGA-44-4112       TCGA-44-5643       TCGA-44-5645       TCGA-44-6144 
"FCGR3A WILD-TYPE" "FCGR3A WILD-TYPE" "FCGR3A WILD-TYPE" "FCGR3A WILD-TYPE" 
      TCGA-44-6145       TCGA-44-6146       TCGA-44-6147       TCGA-44-6148 
"FCGR3A WILD-TYPE" "FCGR3A WILD-TYPE" "FCGR3A WILD-TYPE" "FCGR3A WILD-TYPE" 
      TCGA-44-6774       TCGA-44-6775       TCGA-44-6776       TCGA-44-6777 
"FCGR3A WILD-TYPE" "FCGR3A WILD-TYPE" "FCGR3A WILD-TYPE" "FCGR3A WILD-TYPE" 
      TCGA-44-6778       TCGA-44-6779       TCGA-49-4486       TCGA-49-4487 
"FCGR3A WILD-TYPE" "FCGR3A WILD-TYPE" "FCGR3A WILD-TYPE" "FCGR3A WILD-TYPE" 
      TCGA-49-4488       TCGA-49-4490       TCGA-49-4494       TCGA-49-4501 
"FCGR3A WILD-TYPE" "FCGR3A WILD-TYPE" "FCGR3A WILD-TYPE" "FCGR3A WILD-TYPE" 
      TCGA-49-4505       TCGA-49-4506       TCGA-49-4507       TCGA-49-4510 
"FCGR3A WILD-TYPE" "FCGR3A WILD-TYPE"   "FCGR3A MUTATED" "FCGR3A WILD-TYPE" 
      TCGA-49-4512       TCGA-49-4514       TCGA-49-6742       TCGA-49-6743 
"FCGR3A WILD-TYPE" "FCGR3A WILD-TYPE" "FCGR3A WILD-TYPE" "FCGR3A WILD-TYPE" 
      TCGA-49-6744       TCGA-49-6745       TCGA-50-5044       TCGA-50-5045 
"FCGR3A WILD-TYPE" "FCGR3A WILD-TYPE" "FCGR3A WILD-TYPE" "FCGR3A WILD-TYPE" 
      TCGA-50-5049       TCGA-50-5051       TCGA-50-5055       TCGA-50-5066 
"FCGR3A WILD-TYPE" "FCGR3A WILD-TYPE" "FCGR3A WILD-TYPE" "FCGR3A WILD-TYPE" 
      TCGA-50-5068       TCGA-50-5072       TCGA-50-5930       TCGA-50-5931 
"FCGR3A WILD-TYPE" "FCGR3A WILD-TYPE" "FCGR3A WILD-TYPE" "FCGR3A WILD-TYPE" 
      TCGA-50-5932       TCGA-50-5933       TCGA-50-5935       TCGA-50-5936 
"FCGR3A WILD-TYPE" "FCGR3A WILD-TYPE" "FCGR3A WILD-TYPE" "FCGR3A WILD-TYPE" 
      TCGA-50-5939       TCGA-50-5941       TCGA-50-5942       TCGA-50-5944 
"FCGR3A WILD-TYPE" "FCGR3A WILD-TYPE" "FCGR3A WILD-TYPE" "FCGR3A WILD-TYPE" 
      TCGA-50-5946       TCGA-50-6590       TCGA-50-6591       TCGA-50-6592 
"FCGR3A WILD-TYPE" "FCGR3A WILD-TYPE" "FCGR3A WILD-TYPE" "FCGR3A WILD-TYPE" 
      TCGA-50-6593       TCGA-50-6594       TCGA-50-6595       TCGA-50-6597 
"FCGR3A WILD-TYPE" "FCGR3A WILD-TYPE" "FCGR3A WILD-TYPE" "FCGR3A WILD-TYPE" 
      TCGA-55-1592       TCGA-55-1594       TCGA-55-1595       TCGA-55-1596 
"FCGR3A WILD-TYPE" "FCGR3A WILD-TYPE" "FCGR3A WILD-TYPE" "FCGR3A WILD-TYPE" 
      TCGA-55-5899       TCGA-55-6543       TCGA-55-6642       TCGA-55-6712 
"FCGR3A WILD-TYPE" "FCGR3A WILD-TYPE" "FCGR3A WILD-TYPE" "FCGR3A WILD-TYPE" 
      TCGA-64-1676       TCGA-64-1677       TCGA-64-1678       TCGA-64-1680 
"FCGR3A WILD-TYPE" "FCGR3A WILD-TYPE" "FCGR3A WILD-TYPE" "FCGR3A WILD-TYPE" 
      TCGA-64-5774       TCGA-64-5775       TCGA-64-5778       TCGA-64-5779 
"FCGR3A WILD-TYPE" "FCGR3A WILD-TYPE" "FCGR3A WILD-TYPE" "FCGR3A WILD-TYPE" 
      TCGA-64-5781       TCGA-64-5815       TCGA-67-3770       TCGA-67-3771 
"FCGR3A WILD-TYPE" "FCGR3A WILD-TYPE" "FCGR3A WILD-TYPE" "FCGR3A WILD-TYPE" 
      TCGA-67-3772       TCGA-67-3773       TCGA-67-3774       TCGA-67-6215 
"FCGR3A WILD-TYPE" "FCGR3A WILD-TYPE" "FCGR3A WILD-TYPE" "FCGR3A WILD-TYPE" 
      TCGA-67-6216       TCGA-67-6217       TCGA-71-6725       TCGA-73-4658 
"FCGR3A WILD-TYPE" "FCGR3A WILD-TYPE" "FCGR3A WILD-TYPE" "FCGR3A WILD-TYPE" 
      TCGA-73-4659       TCGA-73-4662       TCGA-73-4666       TCGA-73-4668 
"FCGR3A WILD-TYPE" "FCGR3A WILD-TYPE" "FCGR3A WILD-TYPE" "FCGR3A WILD-TYPE" 
      TCGA-73-4670       TCGA-73-4675       TCGA-73-4676       TCGA-73-4677 
"FCGR3A WILD-TYPE" "FCGR3A WILD-TYPE" "FCGR3A WILD-TYPE" "FCGR3A WILD-TYPE" 
      TCGA-91-6828       TCGA-91-6829       TCGA-91-6831       TCGA-91-6835 
"FCGR3A WILD-TYPE" "FCGR3A WILD-TYPE" "FCGR3A WILD-TYPE" "FCGR3A WILD-TYPE" 
      TCGA-91-6836 
  "FCGR3A MUTATED" 
[1] "hr=" "1.4"
D173V2, continuous
D173V3, binary
[1] "tbl2"
                  cls
clus               [,1] [,2]
  FCGR3A MUTATED      3    3
  FCGR3A WILD-TYPE   90   76
        clus
vv       FCGR3A MUTATED FCGR3A WILD-TYPE
  FEMALE              3               90
  MALE                3               76
D173V4, continuous
D173V5, multiclass
D173V6, multiclass
    clus
vv   FCGR3A MUTATED FCGR3A WILD-TYPE
  T1              0               41
  T2              3              105
  T3              3               11
  T4              0                8
D173V7, multiclass
       clus
vv      FCGR3A MUTATED FCGR3A WILD-TYPE
  N0                 3               92
  N1                 3               34
  N2+N3              0               35
D173V8, multiclass
    clus
vv   FCGR3A MUTATED FCGR3A WILD-TYPE
  M0              3              134
  M1              1                8
  MX              2               20
D173V9, multiclass
     clus
vv    FCGR3A MUTATED FCGR3A WILD-TYPE
  I                1               87
  II               3               30
  III              1               38
  IV               1                8
D173V10, binary
[1] "tbl2"
                  cls
clus               [,1] [,2]
  FCGR3A MUTATED      1    5
  FCGR3A WILD-TYPE   15  151
     clus
vv    FCGR3A MUTATED FCGR3A WILD-TYPE
  NO               1               15
  YES              5              151
D173V11, continuous
D173V12, continuous
D173V13, multiclass
                                             clus
vv                                            FCGR3A MUTATED FCGR3A WILD-TYPE
  CURRENT REFORMED SMOKER FOR < OR = 15 YEARS              3               59
  CURRENT REFORMED SMOKER FOR > 15 YEARS                   0               46
  CURRENT SMOKER                                           2               26
  LIFELONG NON-SMOKER                                      1               23
D173V14, continuous
[1] "Remove cluster labels:" "FCGR3A MUTATED"        
clus
  FCGR3A MUTATED FCGR3A WILD-TYPE 
               2               66 
      TCGA-05-4384       TCGA-05-4390       TCGA-05-4396       TCGA-05-4405 
"FCGR3A WILD-TYPE" "FCGR3A WILD-TYPE" "FCGR3A WILD-TYPE" "FCGR3A WILD-TYPE" 
      TCGA-05-4410       TCGA-05-4415       TCGA-05-4417       TCGA-05-4427 
"FCGR3A WILD-TYPE" "FCGR3A WILD-TYPE" "FCGR3A WILD-TYPE" "FCGR3A WILD-TYPE" 
      TCGA-05-4433       TCGA-05-5420       TCGA-05-5423       TCGA-05-5425 
"FCGR3A WILD-TYPE" "FCGR3A WILD-TYPE" "FCGR3A WILD-TYPE" "FCGR3A WILD-TYPE" 
      TCGA-05-5428       TCGA-35-4122       TCGA-35-4123       TCGA-35-5375 
"FCGR3A WILD-TYPE" "FCGR3A WILD-TYPE" "FCGR3A WILD-TYPE" "FCGR3A WILD-TYPE" 
      TCGA-38-4625       TCGA-38-4626       TCGA-44-2655       TCGA-44-2656 
"FCGR3A WILD-TYPE" "FCGR3A WILD-TYPE" "FCGR3A WILD-TYPE" "FCGR3A WILD-TYPE" 
      TCGA-44-2657       TCGA-44-2659       TCGA-44-2662       TCGA-44-2666 
"FCGR3A WILD-TYPE" "FCGR3A WILD-TYPE" "FCGR3A WILD-TYPE" "FCGR3A WILD-TYPE" 
      TCGA-44-2668       TCGA-44-3396       TCGA-44-3398       TCGA-44-3918 
"FCGR3A WILD-TYPE" "FCGR3A WILD-TYPE" "FCGR3A WILD-TYPE" "FCGR3A WILD-TYPE" 
      TCGA-44-4112       TCGA-44-5645       TCGA-44-6144       TCGA-44-6145 
"FCGR3A WILD-TYPE" "FCGR3A WILD-TYPE" "FCGR3A WILD-TYPE" "FCGR3A WILD-TYPE" 
      TCGA-44-6147       TCGA-44-6148       TCGA-44-6774       TCGA-44-6775 
"FCGR3A WILD-TYPE" "FCGR3A WILD-TYPE" "FCGR3A WILD-TYPE" "FCGR3A WILD-TYPE" 
      TCGA-44-6776       TCGA-44-6777       TCGA-44-6778       TCGA-44-6779 
"FCGR3A WILD-TYPE" "FCGR3A WILD-TYPE" "FCGR3A WILD-TYPE" "FCGR3A WILD-TYPE" 
      TCGA-49-4486       TCGA-49-4494       TCGA-49-4505       TCGA-55-1592 
"FCGR3A WILD-TYPE" "FCGR3A WILD-TYPE" "FCGR3A WILD-TYPE" "FCGR3A WILD-TYPE" 
      TCGA-55-1594       TCGA-55-1595       TCGA-55-1596       TCGA-55-5899 
"FCGR3A WILD-TYPE" "FCGR3A WILD-TYPE" "FCGR3A WILD-TYPE" "FCGR3A WILD-TYPE" 
      TCGA-55-6642       TCGA-55-6712       TCGA-64-1677       TCGA-64-1678 
"FCGR3A WILD-TYPE" "FCGR3A WILD-TYPE" "FCGR3A WILD-TYPE" "FCGR3A WILD-TYPE" 
      TCGA-64-1680       TCGA-64-5774       TCGA-64-5775       TCGA-64-5778 
"FCGR3A WILD-TYPE" "FCGR3A WILD-TYPE" "FCGR3A WILD-TYPE" "FCGR3A WILD-TYPE" 
      TCGA-64-5779       TCGA-64-5781       TCGA-73-4659       TCGA-73-4662 
"FCGR3A WILD-TYPE" "FCGR3A WILD-TYPE" "FCGR3A WILD-TYPE" "FCGR3A WILD-TYPE" 
      TCGA-73-4666       TCGA-73-4668       TCGA-73-4670       TCGA-73-4675 
"FCGR3A WILD-TYPE" "FCGR3A WILD-TYPE" "FCGR3A WILD-TYPE" "FCGR3A WILD-TYPE" 
      TCGA-73-4676       TCGA-91-6829 
"FCGR3A WILD-TYPE" "FCGR3A WILD-TYPE" 

Clustering(174) Variable = ENPP3 MUTATION ANALYSIS
D174V1, survival
                 sevent
clus2              0  1
  ENPP3 MUTATED    4  5
  ENPP3 WILD-TYPE 95 45
  ENPP3 MUTATED ENPP3 WILD-TYPE 
              9             140 
  ENPP3 MUTATED ENPP3 WILD-TYPE 
              5              45 
$`ENPP3 MUTATED`
TCGA-38-4630 TCGA-38-4632 TCGA-44-2656 TCGA-49-4488 TCGA-50-5045 TCGA-50-6594 
       35.28        44.61        19.10        28.57        71.47        12.16 
TCGA-55-5899 TCGA-55-6712 TCGA-73-4670 
        2.86         0.79         0.46 

$`ENPP3 WILD-TYPE`
TCGA-05-4249 TCGA-05-4250 TCGA-05-4382 TCGA-05-4384 TCGA-05-4390 TCGA-05-4396 
       38.07         3.98        19.92        14.01        37.02         9.96 
TCGA-05-4397 TCGA-05-4398 TCGA-05-4402 TCGA-05-4405 TCGA-05-4415 TCGA-05-4417 
       24.03        47.05         8.02        20.05         2.96        14.93 
TCGA-05-4418 TCGA-05-4420 TCGA-05-4424 TCGA-05-4426 TCGA-05-4427 TCGA-05-4430 
        8.98        29.95        30.02        26.01        26.01        25.02 
TCGA-05-4432 TCGA-05-4433 TCGA-05-4434 TCGA-05-5420 TCGA-05-5423 TCGA-05-5425 
       25.02        24.00        15.02         1.02         4.96         2.96 
TCGA-05-5429 TCGA-05-5715 TCGA-35-3615 TCGA-35-4122 TCGA-35-4123 TCGA-35-5375 
        0.99         2.04         0.46         7.36         5.95         8.68 
TCGA-38-4625 TCGA-38-4626 TCGA-38-4627 TCGA-38-4628 TCGA-38-4629 TCGA-38-4631 
       47.61        85.32        37.71        49.02        28.37        11.64 
TCGA-38-6178 TCGA-44-2655 TCGA-44-2657 TCGA-44-2659 TCGA-44-2661 TCGA-44-2662 
        5.19        18.87        13.15        17.39         3.39        15.78 
TCGA-44-2665 TCGA-44-2666 TCGA-44-2668 TCGA-44-3396 TCGA-44-3398 TCGA-44-3918 
       13.15         3.19         8.09        10.22         8.32         6.44 
TCGA-44-3919 TCGA-44-4112 TCGA-44-5643 TCGA-44-5645 TCGA-44-6144 TCGA-44-6145 
        6.21         4.60         3.48         6.84         0.30         3.35 
TCGA-44-6146 TCGA-44-6147 TCGA-44-6148 TCGA-44-6774 TCGA-44-6775 TCGA-44-6776 
        9.93         7.76         3.12         5.42         2.70        63.72 
TCGA-44-6777 TCGA-44-6778 TCGA-44-6779 TCGA-49-4486 TCGA-49-4487 TCGA-49-4490 
       32.45        36.49        16.41        76.21        28.11        12.66 
TCGA-49-4494 TCGA-49-4501 TCGA-49-4505 TCGA-49-4506 TCGA-49-4507 TCGA-49-4510 
       35.54        46.72        14.07        32.84         8.81        29.46 
TCGA-49-4512 TCGA-49-4514 TCGA-49-6742 TCGA-49-6743 TCGA-49-6744 TCGA-49-6745 
       29.75        43.20        15.02        12.13        12.99         4.93 
TCGA-50-5044 TCGA-50-5049 TCGA-50-5051 TCGA-50-5055 TCGA-50-5066 TCGA-50-5068 
       20.48        48.82        14.96        25.81         9.76        49.28 
TCGA-50-5072 TCGA-50-5930 TCGA-50-5931 TCGA-50-5932 TCGA-50-5933 TCGA-50-5935 
        8.05         9.27         8.78        35.87        77.88        21.47 
TCGA-50-5936 TCGA-50-5939 TCGA-50-5941 TCGA-50-5942 TCGA-50-5944 TCGA-50-5946 
        8.45        15.12         9.37         4.44        12.26        11.47 
TCGA-50-6590 TCGA-50-6591 TCGA-50-6592 TCGA-50-6593 TCGA-50-6595 TCGA-50-6597 
       42.31         3.88        25.51        11.05         6.21        33.37 
TCGA-55-1592 TCGA-55-1594 TCGA-55-1595 TCGA-55-1596 TCGA-55-6543 TCGA-55-6642 
       23.05        38.73        48.62        45.17         0.07        32.61 
TCGA-64-1676 TCGA-64-1677 TCGA-64-1678 TCGA-64-1680 TCGA-64-5774 TCGA-64-5775 
       56.81        20.65        39.09        37.02        83.84         0.10 
TCGA-64-5778 TCGA-64-5779 TCGA-64-5781 TCGA-64-5815 TCGA-67-3770 TCGA-67-3771 
       30.44        16.67        39.52         7.33         0.99         1.97 
TCGA-67-3772 TCGA-67-3773 TCGA-67-3774 TCGA-67-6215 TCGA-67-6216 TCGA-67-6217 
        0.59         2.04         0.59         0.89         0.69        13.87 
TCGA-71-6725 TCGA-73-4658 TCGA-73-4659 TCGA-73-4662 TCGA-73-4666 TCGA-73-4668 
        2.01        52.57        23.38        29.95        20.28        15.35 
TCGA-73-4675 TCGA-73-4676 TCGA-73-4677 TCGA-91-6828 TCGA-91-6829 TCGA-91-6831 
        1.32         4.01         1.25         1.22        41.33         1.28 
TCGA-91-6835 TCGA-91-6836 
        1.15         0.36 

  ENPP3 MUTATED ENPP3 WILD-TYPE 
           0.46            0.07 
  ENPP3 MUTATED ENPP3 WILD-TYPE 
          71.47           85.32 
  ENPP3 MUTATED ENPP3 WILD-TYPE 
          19.10           13.51 
[1] "0.5 - 71.5 (19.1)" "0.1 - 85.3 (13.5)"
     TCGA-05-4249      TCGA-05-4250      TCGA-05-4382      TCGA-05-4384 
"ENPP3 WILD-TYPE" "ENPP3 WILD-TYPE" "ENPP3 WILD-TYPE" "ENPP3 WILD-TYPE" 
     TCGA-05-4390      TCGA-05-4396      TCGA-05-4397      TCGA-05-4398 
"ENPP3 WILD-TYPE" "ENPP3 WILD-TYPE" "ENPP3 WILD-TYPE" "ENPP3 WILD-TYPE" 
     TCGA-05-4402      TCGA-05-4405      TCGA-05-4415      TCGA-05-4417 
"ENPP3 WILD-TYPE" "ENPP3 WILD-TYPE" "ENPP3 WILD-TYPE" "ENPP3 WILD-TYPE" 
     TCGA-05-4418      TCGA-05-4420      TCGA-05-4424      TCGA-05-4426 
"ENPP3 WILD-TYPE" "ENPP3 WILD-TYPE" "ENPP3 WILD-TYPE" "ENPP3 WILD-TYPE" 
     TCGA-05-4427      TCGA-05-4430      TCGA-05-4432      TCGA-05-4433 
"ENPP3 WILD-TYPE" "ENPP3 WILD-TYPE" "ENPP3 WILD-TYPE" "ENPP3 WILD-TYPE" 
     TCGA-05-4434      TCGA-05-5420      TCGA-05-5423      TCGA-05-5425 
"ENPP3 WILD-TYPE" "ENPP3 WILD-TYPE" "ENPP3 WILD-TYPE" "ENPP3 WILD-TYPE" 
     TCGA-05-5429      TCGA-05-5715      TCGA-35-3615      TCGA-35-4122 
"ENPP3 WILD-TYPE" "ENPP3 WILD-TYPE" "ENPP3 WILD-TYPE" "ENPP3 WILD-TYPE" 
     TCGA-35-4123      TCGA-35-5375      TCGA-38-4625      TCGA-38-4626 
"ENPP3 WILD-TYPE" "ENPP3 WILD-TYPE" "ENPP3 WILD-TYPE" "ENPP3 WILD-TYPE" 
     TCGA-38-4627      TCGA-38-4628      TCGA-38-4629      TCGA-38-4630 
"ENPP3 WILD-TYPE" "ENPP3 WILD-TYPE" "ENPP3 WILD-TYPE"   "ENPP3 MUTATED" 
     TCGA-38-4631      TCGA-38-4632      TCGA-38-6178      TCGA-44-2655 
"ENPP3 WILD-TYPE"   "ENPP3 MUTATED" "ENPP3 WILD-TYPE" "ENPP3 WILD-TYPE" 
     TCGA-44-2656      TCGA-44-2657      TCGA-44-2659      TCGA-44-2661 
  "ENPP3 MUTATED" "ENPP3 WILD-TYPE" "ENPP3 WILD-TYPE" "ENPP3 WILD-TYPE" 
     TCGA-44-2662      TCGA-44-2665      TCGA-44-2666      TCGA-44-2668 
"ENPP3 WILD-TYPE" "ENPP3 WILD-TYPE" "ENPP3 WILD-TYPE" "ENPP3 WILD-TYPE" 
     TCGA-44-3396      TCGA-44-3398      TCGA-44-3918      TCGA-44-3919 
"ENPP3 WILD-TYPE" "ENPP3 WILD-TYPE" "ENPP3 WILD-TYPE" "ENPP3 WILD-TYPE" 
     TCGA-44-4112      TCGA-44-5643      TCGA-44-5645      TCGA-44-6144 
"ENPP3 WILD-TYPE" "ENPP3 WILD-TYPE" "ENPP3 WILD-TYPE" "ENPP3 WILD-TYPE" 
     TCGA-44-6145      TCGA-44-6146      TCGA-44-6147      TCGA-44-6148 
"ENPP3 WILD-TYPE" "ENPP3 WILD-TYPE" "ENPP3 WILD-TYPE" "ENPP3 WILD-TYPE" 
     TCGA-44-6774      TCGA-44-6775      TCGA-44-6776      TCGA-44-6777 
"ENPP3 WILD-TYPE" "ENPP3 WILD-TYPE" "ENPP3 WILD-TYPE" "ENPP3 WILD-TYPE" 
     TCGA-44-6778      TCGA-44-6779      TCGA-49-4486      TCGA-49-4487 
"ENPP3 WILD-TYPE" "ENPP3 WILD-TYPE" "ENPP3 WILD-TYPE" "ENPP3 WILD-TYPE" 
     TCGA-49-4488      TCGA-49-4490      TCGA-49-4494      TCGA-49-4501 
  "ENPP3 MUTATED" "ENPP3 WILD-TYPE" "ENPP3 WILD-TYPE" "ENPP3 WILD-TYPE" 
     TCGA-49-4505      TCGA-49-4506      TCGA-49-4507      TCGA-49-4510 
"ENPP3 WILD-TYPE" "ENPP3 WILD-TYPE" "ENPP3 WILD-TYPE" "ENPP3 WILD-TYPE" 
     TCGA-49-4512      TCGA-49-4514      TCGA-49-6742      TCGA-49-6743 
"ENPP3 WILD-TYPE" "ENPP3 WILD-TYPE" "ENPP3 WILD-TYPE" "ENPP3 WILD-TYPE" 
     TCGA-49-6744      TCGA-49-6745      TCGA-50-5044      TCGA-50-5045 
"ENPP3 WILD-TYPE" "ENPP3 WILD-TYPE" "ENPP3 WILD-TYPE"   "ENPP3 MUTATED" 
     TCGA-50-5049      TCGA-50-5051      TCGA-50-5055      TCGA-50-5066 
"ENPP3 WILD-TYPE" "ENPP3 WILD-TYPE" "ENPP3 WILD-TYPE" "ENPP3 WILD-TYPE" 
     TCGA-50-5068      TCGA-50-5072      TCGA-50-5930      TCGA-50-5931 
"ENPP3 WILD-TYPE" "ENPP3 WILD-TYPE" "ENPP3 WILD-TYPE" "ENPP3 WILD-TYPE" 
     TCGA-50-5932      TCGA-50-5933      TCGA-50-5935      TCGA-50-5936 
"ENPP3 WILD-TYPE" "ENPP3 WILD-TYPE" "ENPP3 WILD-TYPE" "ENPP3 WILD-TYPE" 
     TCGA-50-5939      TCGA-50-5941      TCGA-50-5942      TCGA-50-5944 
"ENPP3 WILD-TYPE" "ENPP3 WILD-TYPE" "ENPP3 WILD-TYPE" "ENPP3 WILD-TYPE" 
     TCGA-50-5946      TCGA-50-6590      TCGA-50-6591      TCGA-50-6592 
"ENPP3 WILD-TYPE" "ENPP3 WILD-TYPE" "ENPP3 WILD-TYPE" "ENPP3 WILD-TYPE" 
     TCGA-50-6593      TCGA-50-6594      TCGA-50-6595      TCGA-50-6597 
"ENPP3 WILD-TYPE"   "ENPP3 MUTATED" "ENPP3 WILD-TYPE" "ENPP3 WILD-TYPE" 
     TCGA-55-1592      TCGA-55-1594      TCGA-55-1595      TCGA-55-1596 
"ENPP3 WILD-TYPE" "ENPP3 WILD-TYPE" "ENPP3 WILD-TYPE" "ENPP3 WILD-TYPE" 
     TCGA-55-5899      TCGA-55-6543      TCGA-55-6642      TCGA-55-6712 
  "ENPP3 MUTATED" "ENPP3 WILD-TYPE" "ENPP3 WILD-TYPE"   "ENPP3 MUTATED" 
     TCGA-64-1676      TCGA-64-1677      TCGA-64-1678      TCGA-64-1680 
"ENPP3 WILD-TYPE" "ENPP3 WILD-TYPE" "ENPP3 WILD-TYPE" "ENPP3 WILD-TYPE" 
     TCGA-64-5774      TCGA-64-5775      TCGA-64-5778      TCGA-64-5779 
"ENPP3 WILD-TYPE" "ENPP3 WILD-TYPE" "ENPP3 WILD-TYPE" "ENPP3 WILD-TYPE" 
     TCGA-64-5781      TCGA-64-5815      TCGA-67-3770      TCGA-67-3771 
"ENPP3 WILD-TYPE" "ENPP3 WILD-TYPE" "ENPP3 WILD-TYPE" "ENPP3 WILD-TYPE" 
     TCGA-67-3772      TCGA-67-3773      TCGA-67-3774      TCGA-67-6215 
"ENPP3 WILD-TYPE" "ENPP3 WILD-TYPE" "ENPP3 WILD-TYPE" "ENPP3 WILD-TYPE" 
     TCGA-67-6216      TCGA-67-6217      TCGA-71-6725      TCGA-73-4658 
"ENPP3 WILD-TYPE" "ENPP3 WILD-TYPE" "ENPP3 WILD-TYPE" "ENPP3 WILD-TYPE" 
     TCGA-73-4659      TCGA-73-4662      TCGA-73-4666      TCGA-73-4668 
"ENPP3 WILD-TYPE" "ENPP3 WILD-TYPE" "ENPP3 WILD-TYPE" "ENPP3 WILD-TYPE" 
     TCGA-73-4670      TCGA-73-4675      TCGA-73-4676      TCGA-73-4677 
  "ENPP3 MUTATED" "ENPP3 WILD-TYPE" "ENPP3 WILD-TYPE" "ENPP3 WILD-TYPE" 
     TCGA-91-6828      TCGA-91-6829      TCGA-91-6831      TCGA-91-6835 
"ENPP3 WILD-TYPE" "ENPP3 WILD-TYPE" "ENPP3 WILD-TYPE" "ENPP3 WILD-TYPE" 
     TCGA-91-6836 
"ENPP3 WILD-TYPE" 
     TCGA-05-4249      TCGA-05-4250      TCGA-05-4382      TCGA-05-4384 
"ENPP3 WILD-TYPE" "ENPP3 WILD-TYPE" "ENPP3 WILD-TYPE" "ENPP3 WILD-TYPE" 
     TCGA-05-4390      TCGA-05-4396      TCGA-05-4397      TCGA-05-4398 
"ENPP3 WILD-TYPE" "ENPP3 WILD-TYPE" "ENPP3 WILD-TYPE" "ENPP3 WILD-TYPE" 
     TCGA-05-4402      TCGA-05-4405      TCGA-05-4415      TCGA-05-4417 
"ENPP3 WILD-TYPE" "ENPP3 WILD-TYPE" "ENPP3 WILD-TYPE" "ENPP3 WILD-TYPE" 
     TCGA-05-4418      TCGA-05-4420      TCGA-05-4424      TCGA-05-4426 
"ENPP3 WILD-TYPE" "ENPP3 WILD-TYPE" "ENPP3 WILD-TYPE" "ENPP3 WILD-TYPE" 
     TCGA-05-4427      TCGA-05-4430      TCGA-05-4432      TCGA-05-4433 
"ENPP3 WILD-TYPE" "ENPP3 WILD-TYPE" "ENPP3 WILD-TYPE" "ENPP3 WILD-TYPE" 
     TCGA-05-4434      TCGA-05-5420      TCGA-05-5423      TCGA-05-5425 
"ENPP3 WILD-TYPE" "ENPP3 WILD-TYPE" "ENPP3 WILD-TYPE" "ENPP3 WILD-TYPE" 
     TCGA-05-5429      TCGA-05-5715      TCGA-35-3615      TCGA-35-4122 
"ENPP3 WILD-TYPE" "ENPP3 WILD-TYPE" "ENPP3 WILD-TYPE" "ENPP3 WILD-TYPE" 
     TCGA-35-4123      TCGA-35-5375      TCGA-38-4625      TCGA-38-4626 
"ENPP3 WILD-TYPE" "ENPP3 WILD-TYPE" "ENPP3 WILD-TYPE" "ENPP3 WILD-TYPE" 
     TCGA-38-4627      TCGA-38-4628      TCGA-38-4629      TCGA-38-4630 
"ENPP3 WILD-TYPE" "ENPP3 WILD-TYPE" "ENPP3 WILD-TYPE"   "ENPP3 MUTATED" 
     TCGA-38-4631      TCGA-38-4632      TCGA-38-6178      TCGA-44-2655 
"ENPP3 WILD-TYPE"   "ENPP3 MUTATED" "ENPP3 WILD-TYPE" "ENPP3 WILD-TYPE" 
     TCGA-44-2656      TCGA-44-2657      TCGA-44-2659      TCGA-44-2661 
  "ENPP3 MUTATED" "ENPP3 WILD-TYPE" "ENPP3 WILD-TYPE" "ENPP3 WILD-TYPE" 
     TCGA-44-2662      TCGA-44-2665      TCGA-44-2666      TCGA-44-2668 
"ENPP3 WILD-TYPE" "ENPP3 WILD-TYPE" "ENPP3 WILD-TYPE" "ENPP3 WILD-TYPE" 
     TCGA-44-3396      TCGA-44-3398      TCGA-44-3918      TCGA-44-3919 
"ENPP3 WILD-TYPE" "ENPP3 WILD-TYPE" "ENPP3 WILD-TYPE" "ENPP3 WILD-TYPE" 
     TCGA-44-4112      TCGA-44-5643      TCGA-44-5645      TCGA-44-6144 
"ENPP3 WILD-TYPE" "ENPP3 WILD-TYPE" "ENPP3 WILD-TYPE" "ENPP3 WILD-TYPE" 
     TCGA-44-6145      TCGA-44-6146      TCGA-44-6147      TCGA-44-6148 
"ENPP3 WILD-TYPE" "ENPP3 WILD-TYPE" "ENPP3 WILD-TYPE" "ENPP3 WILD-TYPE" 
     TCGA-44-6774      TCGA-44-6775      TCGA-44-6776      TCGA-44-6777 
"ENPP3 WILD-TYPE" "ENPP3 WILD-TYPE" "ENPP3 WILD-TYPE" "ENPP3 WILD-TYPE" 
     TCGA-44-6778      TCGA-44-6779      TCGA-49-4486      TCGA-49-4487 
"ENPP3 WILD-TYPE" "ENPP3 WILD-TYPE" "ENPP3 WILD-TYPE" "ENPP3 WILD-TYPE" 
     TCGA-49-4488      TCGA-49-4490      TCGA-49-4494      TCGA-49-4501 
  "ENPP3 MUTATED" "ENPP3 WILD-TYPE" "ENPP3 WILD-TYPE" "ENPP3 WILD-TYPE" 
     TCGA-49-4505      TCGA-49-4506      TCGA-49-4507      TCGA-49-4510 
"ENPP3 WILD-TYPE" "ENPP3 WILD-TYPE" "ENPP3 WILD-TYPE" "ENPP3 WILD-TYPE" 
     TCGA-49-4512      TCGA-49-4514      TCGA-49-6742      TCGA-49-6743 
"ENPP3 WILD-TYPE" "ENPP3 WILD-TYPE" "ENPP3 WILD-TYPE" "ENPP3 WILD-TYPE" 
     TCGA-49-6744      TCGA-49-6745      TCGA-50-5044      TCGA-50-5045 
"ENPP3 WILD-TYPE" "ENPP3 WILD-TYPE" "ENPP3 WILD-TYPE"   "ENPP3 MUTATED" 
     TCGA-50-5049      TCGA-50-5051      TCGA-50-5055      TCGA-50-5066 
"ENPP3 WILD-TYPE" "ENPP3 WILD-TYPE" "ENPP3 WILD-TYPE" "ENPP3 WILD-TYPE" 
     TCGA-50-5068      TCGA-50-5072      TCGA-50-5930      TCGA-50-5931 
"ENPP3 WILD-TYPE" "ENPP3 WILD-TYPE" "ENPP3 WILD-TYPE" "ENPP3 WILD-TYPE" 
     TCGA-50-5932      TCGA-50-5933      TCGA-50-5935      TCGA-50-5936 
"ENPP3 WILD-TYPE" "ENPP3 WILD-TYPE" "ENPP3 WILD-TYPE" "ENPP3 WILD-TYPE" 
     TCGA-50-5939      TCGA-50-5941      TCGA-50-5942      TCGA-50-5944 
"ENPP3 WILD-TYPE" "ENPP3 WILD-TYPE" "ENPP3 WILD-TYPE" "ENPP3 WILD-TYPE" 
     TCGA-50-5946      TCGA-50-6590      TCGA-50-6591      TCGA-50-6592 
"ENPP3 WILD-TYPE" "ENPP3 WILD-TYPE" "ENPP3 WILD-TYPE" "ENPP3 WILD-TYPE" 
     TCGA-50-6593      TCGA-50-6594      TCGA-50-6595      TCGA-50-6597 
"ENPP3 WILD-TYPE"   "ENPP3 MUTATED" "ENPP3 WILD-TYPE" "ENPP3 WILD-TYPE" 
     TCGA-55-1592      TCGA-55-1594      TCGA-55-1595      TCGA-55-1596 
"ENPP3 WILD-TYPE" "ENPP3 WILD-TYPE" "ENPP3 WILD-TYPE" "ENPP3 WILD-TYPE" 
     TCGA-55-5899      TCGA-55-6543      TCGA-55-6642      TCGA-55-6712 
  "ENPP3 MUTATED" "ENPP3 WILD-TYPE" "ENPP3 WILD-TYPE"   "ENPP3 MUTATED" 
     TCGA-64-1676      TCGA-64-1677      TCGA-64-1678      TCGA-64-1680 
"ENPP3 WILD-TYPE" "ENPP3 WILD-TYPE" "ENPP3 WILD-TYPE" "ENPP3 WILD-TYPE" 
     TCGA-64-5774      TCGA-64-5775      TCGA-64-5778      TCGA-64-5779 
"ENPP3 WILD-TYPE" "ENPP3 WILD-TYPE" "ENPP3 WILD-TYPE" "ENPP3 WILD-TYPE" 
     TCGA-64-5781      TCGA-64-5815      TCGA-67-3770      TCGA-67-3771 
"ENPP3 WILD-TYPE" "ENPP3 WILD-TYPE" "ENPP3 WILD-TYPE" "ENPP3 WILD-TYPE" 
     TCGA-67-3772      TCGA-67-3773      TCGA-67-3774      TCGA-67-6215 
"ENPP3 WILD-TYPE" "ENPP3 WILD-TYPE" "ENPP3 WILD-TYPE" "ENPP3 WILD-TYPE" 
     TCGA-67-6216      TCGA-67-6217      TCGA-71-6725      TCGA-73-4658 
"ENPP3 WILD-TYPE" "ENPP3 WILD-TYPE" "ENPP3 WILD-TYPE" "ENPP3 WILD-TYPE" 
     TCGA-73-4659      TCGA-73-4662      TCGA-73-4666      TCGA-73-4668 
"ENPP3 WILD-TYPE" "ENPP3 WILD-TYPE" "ENPP3 WILD-TYPE" "ENPP3 WILD-TYPE" 
     TCGA-73-4670      TCGA-73-4675      TCGA-73-4676      TCGA-73-4677 
  "ENPP3 MUTATED" "ENPP3 WILD-TYPE" "ENPP3 WILD-TYPE" "ENPP3 WILD-TYPE" 
     TCGA-91-6828      TCGA-91-6829      TCGA-91-6831      TCGA-91-6835 
"ENPP3 WILD-TYPE" "ENPP3 WILD-TYPE" "ENPP3 WILD-TYPE" "ENPP3 WILD-TYPE" 
     TCGA-91-6836 
"ENPP3 WILD-TYPE" 
     TCGA-05-4249      TCGA-05-4250      TCGA-05-4382      TCGA-05-4384 
"ENPP3 WILD-TYPE" "ENPP3 WILD-TYPE" "ENPP3 WILD-TYPE" "ENPP3 WILD-TYPE" 
     TCGA-05-4390      TCGA-05-4396      TCGA-05-4397      TCGA-05-4398 
"ENPP3 WILD-TYPE" "ENPP3 WILD-TYPE" "ENPP3 WILD-TYPE" "ENPP3 WILD-TYPE" 
     TCGA-05-4402      TCGA-05-4405      TCGA-05-4415      TCGA-05-4417 
"ENPP3 WILD-TYPE" "ENPP3 WILD-TYPE" "ENPP3 WILD-TYPE" "ENPP3 WILD-TYPE" 
     TCGA-05-4418      TCGA-05-4420      TCGA-05-4424      TCGA-05-4426 
"ENPP3 WILD-TYPE" "ENPP3 WILD-TYPE" "ENPP3 WILD-TYPE" "ENPP3 WILD-TYPE" 
     TCGA-05-4427      TCGA-05-4430      TCGA-05-4432      TCGA-05-4433 
"ENPP3 WILD-TYPE" "ENPP3 WILD-TYPE" "ENPP3 WILD-TYPE" "ENPP3 WILD-TYPE" 
     TCGA-05-4434      TCGA-05-5420      TCGA-05-5423      TCGA-05-5425 
"ENPP3 WILD-TYPE" "ENPP3 WILD-TYPE" "ENPP3 WILD-TYPE" "ENPP3 WILD-TYPE" 
     TCGA-05-5429      TCGA-05-5715      TCGA-35-3615      TCGA-35-4122 
"ENPP3 WILD-TYPE" "ENPP3 WILD-TYPE" "ENPP3 WILD-TYPE" "ENPP3 WILD-TYPE" 
     TCGA-35-4123      TCGA-35-5375      TCGA-38-4625      TCGA-38-4626 
"ENPP3 WILD-TYPE" "ENPP3 WILD-TYPE" "ENPP3 WILD-TYPE" "ENPP3 WILD-TYPE" 
     TCGA-38-4627      TCGA-38-4628      TCGA-38-4629      TCGA-38-4630 
"ENPP3 WILD-TYPE" "ENPP3 WILD-TYPE" "ENPP3 WILD-TYPE"   "ENPP3 MUTATED" 
     TCGA-38-4631      TCGA-38-4632      TCGA-38-6178      TCGA-44-2655 
"ENPP3 WILD-TYPE"   "ENPP3 MUTATED" "ENPP3 WILD-TYPE" "ENPP3 WILD-TYPE" 
     TCGA-44-2656      TCGA-44-2657      TCGA-44-2659      TCGA-44-2661 
  "ENPP3 MUTATED" "ENPP3 WILD-TYPE" "ENPP3 WILD-TYPE" "ENPP3 WILD-TYPE" 
     TCGA-44-2662      TCGA-44-2665      TCGA-44-2666      TCGA-44-2668 
"ENPP3 WILD-TYPE" "ENPP3 WILD-TYPE" "ENPP3 WILD-TYPE" "ENPP3 WILD-TYPE" 
     TCGA-44-3396      TCGA-44-3398      TCGA-44-3918      TCGA-44-3919 
"ENPP3 WILD-TYPE" "ENPP3 WILD-TYPE" "ENPP3 WILD-TYPE" "ENPP3 WILD-TYPE" 
     TCGA-44-4112      TCGA-44-5643      TCGA-44-5645      TCGA-44-6144 
"ENPP3 WILD-TYPE" "ENPP3 WILD-TYPE" "ENPP3 WILD-TYPE" "ENPP3 WILD-TYPE" 
     TCGA-44-6145      TCGA-44-6146      TCGA-44-6147      TCGA-44-6148 
"ENPP3 WILD-TYPE" "ENPP3 WILD-TYPE" "ENPP3 WILD-TYPE" "ENPP3 WILD-TYPE" 
     TCGA-44-6774      TCGA-44-6775      TCGA-44-6776      TCGA-44-6777 
"ENPP3 WILD-TYPE" "ENPP3 WILD-TYPE" "ENPP3 WILD-TYPE" "ENPP3 WILD-TYPE" 
     TCGA-44-6778      TCGA-44-6779      TCGA-49-4486      TCGA-49-4487 
"ENPP3 WILD-TYPE" "ENPP3 WILD-TYPE" "ENPP3 WILD-TYPE" "ENPP3 WILD-TYPE" 
     TCGA-49-4488      TCGA-49-4490      TCGA-49-4494      TCGA-49-4501 
  "ENPP3 MUTATED" "ENPP3 WILD-TYPE" "ENPP3 WILD-TYPE" "ENPP3 WILD-TYPE" 
     TCGA-49-4505      TCGA-49-4506      TCGA-49-4507      TCGA-49-4510 
"ENPP3 WILD-TYPE" "ENPP3 WILD-TYPE" "ENPP3 WILD-TYPE" "ENPP3 WILD-TYPE" 
     TCGA-49-4512      TCGA-49-4514      TCGA-49-6742      TCGA-49-6743 
"ENPP3 WILD-TYPE" "ENPP3 WILD-TYPE" "ENPP3 WILD-TYPE" "ENPP3 WILD-TYPE" 
     TCGA-49-6744      TCGA-49-6745      TCGA-50-5044      TCGA-50-5045 
"ENPP3 WILD-TYPE" "ENPP3 WILD-TYPE" "ENPP3 WILD-TYPE"   "ENPP3 MUTATED" 
     TCGA-50-5049      TCGA-50-5051      TCGA-50-5055      TCGA-50-5066 
"ENPP3 WILD-TYPE" "ENPP3 WILD-TYPE" "ENPP3 WILD-TYPE" "ENPP3 WILD-TYPE" 
     TCGA-50-5068      TCGA-50-5072      TCGA-50-5930      TCGA-50-5931 
"ENPP3 WILD-TYPE" "ENPP3 WILD-TYPE" "ENPP3 WILD-TYPE" "ENPP3 WILD-TYPE" 
     TCGA-50-5932      TCGA-50-5933      TCGA-50-5935      TCGA-50-5936 
"ENPP3 WILD-TYPE" "ENPP3 WILD-TYPE" "ENPP3 WILD-TYPE" "ENPP3 WILD-TYPE" 
     TCGA-50-5939      TCGA-50-5941      TCGA-50-5942      TCGA-50-5944 
"ENPP3 WILD-TYPE" "ENPP3 WILD-TYPE" "ENPP3 WILD-TYPE" "ENPP3 WILD-TYPE" 
     TCGA-50-5946      TCGA-50-6590      TCGA-50-6591      TCGA-50-6592 
"ENPP3 WILD-TYPE" "ENPP3 WILD-TYPE" "ENPP3 WILD-TYPE" "ENPP3 WILD-TYPE" 
     TCGA-50-6593      TCGA-50-6594      TCGA-50-6595      TCGA-50-6597 
"ENPP3 WILD-TYPE"   "ENPP3 MUTATED" "ENPP3 WILD-TYPE" "ENPP3 WILD-TYPE" 
     TCGA-55-1592      TCGA-55-1594      TCGA-55-1595      TCGA-55-1596 
"ENPP3 WILD-TYPE" "ENPP3 WILD-TYPE" "ENPP3 WILD-TYPE" "ENPP3 WILD-TYPE" 
     TCGA-55-5899      TCGA-55-6543      TCGA-55-6642      TCGA-55-6712 
  "ENPP3 MUTATED" "ENPP3 WILD-TYPE" "ENPP3 WILD-TYPE"   "ENPP3 MUTATED" 
     TCGA-64-1676      TCGA-64-1677      TCGA-64-1678      TCGA-64-1680 
"ENPP3 WILD-TYPE" "ENPP3 WILD-TYPE" "ENPP3 WILD-TYPE" "ENPP3 WILD-TYPE" 
     TCGA-64-5774      TCGA-64-5775      TCGA-64-5778      TCGA-64-5779 
"ENPP3 WILD-TYPE" "ENPP3 WILD-TYPE" "ENPP3 WILD-TYPE" "ENPP3 WILD-TYPE" 
     TCGA-64-5781      TCGA-64-5815      TCGA-67-3770      TCGA-67-3771 
"ENPP3 WILD-TYPE" "ENPP3 WILD-TYPE" "ENPP3 WILD-TYPE" "ENPP3 WILD-TYPE" 
     TCGA-67-3772      TCGA-67-3773      TCGA-67-3774      TCGA-67-6215 
"ENPP3 WILD-TYPE" "ENPP3 WILD-TYPE" "ENPP3 WILD-TYPE" "ENPP3 WILD-TYPE" 
     TCGA-67-6216      TCGA-67-6217      TCGA-71-6725      TCGA-73-4658 
"ENPP3 WILD-TYPE" "ENPP3 WILD-TYPE" "ENPP3 WILD-TYPE" "ENPP3 WILD-TYPE" 
     TCGA-73-4659      TCGA-73-4662      TCGA-73-4666      TCGA-73-4668 
"ENPP3 WILD-TYPE" "ENPP3 WILD-TYPE" "ENPP3 WILD-TYPE" "ENPP3 WILD-TYPE" 
     TCGA-73-4670      TCGA-73-4675      TCGA-73-4676      TCGA-73-4677 
  "ENPP3 MUTATED" "ENPP3 WILD-TYPE" "ENPP3 WILD-TYPE" "ENPP3 WILD-TYPE" 
     TCGA-91-6828      TCGA-91-6829      TCGA-91-6831      TCGA-91-6835 
"ENPP3 WILD-TYPE" "ENPP3 WILD-TYPE" "ENPP3 WILD-TYPE" "ENPP3 WILD-TYPE" 
     TCGA-91-6836 
"ENPP3 WILD-TYPE" 
[1] "hr=" "1.4"
D174V2, continuous
D174V3, binary
[1] "tbl2"
                 cls
clus              [,1] [,2]
  ENPP3 MUTATED      5    5
  ENPP3 WILD-TYPE   88   74
        clus
vv       ENPP3 MUTATED ENPP3 WILD-TYPE
  FEMALE             5              88
  MALE               5              74
D174V4, continuous
D174V5, multiclass
D174V6, multiclass
    clus
vv   ENPP3 MUTATED ENPP3 WILD-TYPE
  T1             2              39
  T2             7             101
  T3             1              13
  T4             0               8
D174V7, multiclass
       clus
vv      ENPP3 MUTATED ENPP3 WILD-TYPE
  N0                5              90
  N1                4              33
  N2+N3             1              34
D174V8, multiclass
    clus
vv   ENPP3 MUTATED ENPP3 WILD-TYPE
  M0             5             132
  M1             2               7
  MX             2              20
D174V9, multiclass
     clus
vv    ENPP3 MUTATED ENPP3 WILD-TYPE
  I               6              82
  II              0              33
  III             1              38
  IV              2               7
D174V10, binary
[1] "tbl2"
                 cls
clus              [,1] [,2]
  ENPP3 MUTATED      1    9
  ENPP3 WILD-TYPE   15  147
     clus
vv    ENPP3 MUTATED ENPP3 WILD-TYPE
  NO              1              15
  YES             9             147
D174V11, continuous
D174V12, continuous
D174V13, multiclass
                                             clus
vv                                            ENPP3 MUTATED ENPP3 WILD-TYPE
  CURRENT REFORMED SMOKER FOR < OR = 15 YEARS             5              57
  CURRENT REFORMED SMOKER FOR > 15 YEARS                  2              44
  CURRENT SMOKER                                          1              27
  LIFELONG NON-SMOKER                                     1              23
D174V14, continuous

Clustering(175) Variable = STXBP5L MUTATION ANALYSIS
D175V1, survival
                   sevent
clus2                0  1
  STXBP5L MUTATED    9  2
  STXBP5L WILD-TYPE 90 48
  STXBP5L MUTATED STXBP5L WILD-TYPE 
               11               138 
  STXBP5L MUTATED STXBP5L WILD-TYPE 
                2                48 
$`STXBP5L MUTATED`
TCGA-05-4396 TCGA-38-4625 TCGA-38-4626 TCGA-44-2659 TCGA-44-4112 TCGA-44-6778 
        9.96        47.61        85.32        17.39         4.60        36.49 
TCGA-49-4505 TCGA-49-6744 TCGA-50-5941 TCGA-67-6217 TCGA-91-6836 
       14.07        12.99         9.37        13.87         0.36 

$`STXBP5L WILD-TYPE`
TCGA-05-4249 TCGA-05-4250 TCGA-05-4382 TCGA-05-4384 TCGA-05-4390 TCGA-05-4397 
       38.07         3.98        19.92        14.01        37.02        24.03 
TCGA-05-4398 TCGA-05-4402 TCGA-05-4405 TCGA-05-4415 TCGA-05-4417 TCGA-05-4418 
       47.05         8.02        20.05         2.96        14.93         8.98 
TCGA-05-4420 TCGA-05-4424 TCGA-05-4426 TCGA-05-4427 TCGA-05-4430 TCGA-05-4432 
       29.95        30.02        26.01        26.01        25.02        25.02 
TCGA-05-4433 TCGA-05-4434 TCGA-05-5420 TCGA-05-5423 TCGA-05-5425 TCGA-05-5429 
       24.00        15.02         1.02         4.96         2.96         0.99 
TCGA-05-5715 TCGA-35-3615 TCGA-35-4122 TCGA-35-4123 TCGA-35-5375 TCGA-38-4627 
        2.04         0.46         7.36         5.95         8.68        37.71 
TCGA-38-4628 TCGA-38-4629 TCGA-38-4630 TCGA-38-4631 TCGA-38-4632 TCGA-38-6178 
       49.02        28.37        35.28        11.64        44.61         5.19 
TCGA-44-2655 TCGA-44-2656 TCGA-44-2657 TCGA-44-2661 TCGA-44-2662 TCGA-44-2665 
       18.87        19.10        13.15         3.39        15.78        13.15 
TCGA-44-2666 TCGA-44-2668 TCGA-44-3396 TCGA-44-3398 TCGA-44-3918 TCGA-44-3919 
        3.19         8.09        10.22         8.32         6.44         6.21 
TCGA-44-5643 TCGA-44-5645 TCGA-44-6144 TCGA-44-6145 TCGA-44-6146 TCGA-44-6147 
        3.48         6.84         0.30         3.35         9.93         7.76 
TCGA-44-6148 TCGA-44-6774 TCGA-44-6775 TCGA-44-6776 TCGA-44-6777 TCGA-44-6779 
        3.12         5.42         2.70        63.72        32.45        16.41 
TCGA-49-4486 TCGA-49-4487 TCGA-49-4488 TCGA-49-4490 TCGA-49-4494 TCGA-49-4501 
       76.21        28.11        28.57        12.66        35.54        46.72 
TCGA-49-4506 TCGA-49-4507 TCGA-49-4510 TCGA-49-4512 TCGA-49-4514 TCGA-49-6742 
       32.84         8.81        29.46        29.75        43.20        15.02 
TCGA-49-6743 TCGA-49-6745 TCGA-50-5044 TCGA-50-5045 TCGA-50-5049 TCGA-50-5051 
       12.13         4.93        20.48        71.47        48.82        14.96 
TCGA-50-5055 TCGA-50-5066 TCGA-50-5068 TCGA-50-5072 TCGA-50-5930 TCGA-50-5931 
       25.81         9.76        49.28         8.05         9.27         8.78 
TCGA-50-5932 TCGA-50-5933 TCGA-50-5935 TCGA-50-5936 TCGA-50-5939 TCGA-50-5942 
       35.87        77.88        21.47         8.45        15.12         4.44 
TCGA-50-5944 TCGA-50-5946 TCGA-50-6590 TCGA-50-6591 TCGA-50-6592 TCGA-50-6593 
       12.26        11.47        42.31         3.88        25.51        11.05 
TCGA-50-6594 TCGA-50-6595 TCGA-50-6597 TCGA-55-1592 TCGA-55-1594 TCGA-55-1595 
       12.16         6.21        33.37        23.05        38.73        48.62 
TCGA-55-1596 TCGA-55-5899 TCGA-55-6543 TCGA-55-6642 TCGA-55-6712 TCGA-64-1676 
       45.17         2.86         0.07        32.61         0.79        56.81 
TCGA-64-1677 TCGA-64-1678 TCGA-64-1680 TCGA-64-5774 TCGA-64-5775 TCGA-64-5778 
       20.65        39.09        37.02        83.84         0.10        30.44 
TCGA-64-5779 TCGA-64-5781 TCGA-64-5815 TCGA-67-3770 TCGA-67-3771 TCGA-67-3772 
       16.67        39.52         7.33         0.99         1.97         0.59 
TCGA-67-3773 TCGA-67-3774 TCGA-67-6215 TCGA-67-6216 TCGA-71-6725 TCGA-73-4658 
        2.04         0.59         0.89         0.69         2.01        52.57 
TCGA-73-4659 TCGA-73-4662 TCGA-73-4666 TCGA-73-4668 TCGA-73-4670 TCGA-73-4675 
       23.38        29.95        20.28        15.35         0.46         1.32 
TCGA-73-4676 TCGA-73-4677 TCGA-91-6828 TCGA-91-6829 TCGA-91-6831 TCGA-91-6835 
        4.01         1.25         1.22        41.33         1.28         1.15 

  STXBP5L MUTATED STXBP5L WILD-TYPE 
             0.36              0.07 
  STXBP5L MUTATED STXBP5L WILD-TYPE 
            85.32             83.84 
  STXBP5L MUTATED STXBP5L WILD-TYPE 
            13.87             13.58 
[1] "0.4 - 85.3 (13.9)" "0.1 - 83.8 (13.6)"
       TCGA-05-4249        TCGA-05-4250        TCGA-05-4382        TCGA-05-4384 
"STXBP5L WILD-TYPE" "STXBP5L WILD-TYPE" "STXBP5L WILD-TYPE" "STXBP5L WILD-TYPE" 
       TCGA-05-4390        TCGA-05-4396        TCGA-05-4397        TCGA-05-4398 
"STXBP5L WILD-TYPE"   "STXBP5L MUTATED" "STXBP5L WILD-TYPE" "STXBP5L WILD-TYPE" 
       TCGA-05-4402        TCGA-05-4405        TCGA-05-4415        TCGA-05-4417 
"STXBP5L WILD-TYPE" "STXBP5L WILD-TYPE" "STXBP5L WILD-TYPE" "STXBP5L WILD-TYPE" 
       TCGA-05-4418        TCGA-05-4420        TCGA-05-4424        TCGA-05-4426 
"STXBP5L WILD-TYPE" "STXBP5L WILD-TYPE" "STXBP5L WILD-TYPE" "STXBP5L WILD-TYPE" 
       TCGA-05-4427        TCGA-05-4430        TCGA-05-4432        TCGA-05-4433 
"STXBP5L WILD-TYPE" "STXBP5L WILD-TYPE" "STXBP5L WILD-TYPE" "STXBP5L WILD-TYPE" 
       TCGA-05-4434        TCGA-05-5420        TCGA-05-5423        TCGA-05-5425 
"STXBP5L WILD-TYPE" "STXBP5L WILD-TYPE" "STXBP5L WILD-TYPE" "STXBP5L WILD-TYPE" 
       TCGA-05-5429        TCGA-05-5715        TCGA-35-3615        TCGA-35-4122 
"STXBP5L WILD-TYPE" "STXBP5L WILD-TYPE" "STXBP5L WILD-TYPE" "STXBP5L WILD-TYPE" 
       TCGA-35-4123        TCGA-35-5375        TCGA-38-4625        TCGA-38-4626 
"STXBP5L WILD-TYPE" "STXBP5L WILD-TYPE"   "STXBP5L MUTATED"   "STXBP5L MUTATED" 
       TCGA-38-4627        TCGA-38-4628        TCGA-38-4629        TCGA-38-4630 
"STXBP5L WILD-TYPE" "STXBP5L WILD-TYPE" "STXBP5L WILD-TYPE" "STXBP5L WILD-TYPE" 
       TCGA-38-4631        TCGA-38-4632        TCGA-38-6178        TCGA-44-2655 
"STXBP5L WILD-TYPE" "STXBP5L WILD-TYPE" "STXBP5L WILD-TYPE" "STXBP5L WILD-TYPE" 
       TCGA-44-2656        TCGA-44-2657        TCGA-44-2659        TCGA-44-2661 
"STXBP5L WILD-TYPE" "STXBP5L WILD-TYPE"   "STXBP5L MUTATED" "STXBP5L WILD-TYPE" 
       TCGA-44-2662        TCGA-44-2665        TCGA-44-2666        TCGA-44-2668 
"STXBP5L WILD-TYPE" "STXBP5L WILD-TYPE" "STXBP5L WILD-TYPE" "STXBP5L WILD-TYPE" 
       TCGA-44-3396        TCGA-44-3398        TCGA-44-3918        TCGA-44-3919 
"STXBP5L WILD-TYPE" "STXBP5L WILD-TYPE" "STXBP5L WILD-TYPE" "STXBP5L WILD-TYPE" 
       TCGA-44-4112        TCGA-44-5643        TCGA-44-5645        TCGA-44-6144 
  "STXBP5L MUTATED" "STXBP5L WILD-TYPE" "STXBP5L WILD-TYPE" "STXBP5L WILD-TYPE" 
       TCGA-44-6145        TCGA-44-6146        TCGA-44-6147        TCGA-44-6148 
"STXBP5L WILD-TYPE" "STXBP5L WILD-TYPE" "STXBP5L WILD-TYPE" "STXBP5L WILD-TYPE" 
       TCGA-44-6774        TCGA-44-6775        TCGA-44-6776        TCGA-44-6777 
"STXBP5L WILD-TYPE" "STXBP5L WILD-TYPE" "STXBP5L WILD-TYPE" "STXBP5L WILD-TYPE" 
       TCGA-44-6778        TCGA-44-6779        TCGA-49-4486        TCGA-49-4487 
  "STXBP5L MUTATED" "STXBP5L WILD-TYPE" "STXBP5L WILD-TYPE" "STXBP5L WILD-TYPE" 
       TCGA-49-4488        TCGA-49-4490        TCGA-49-4494        TCGA-49-4501 
"STXBP5L WILD-TYPE" "STXBP5L WILD-TYPE" "STXBP5L WILD-TYPE" "STXBP5L WILD-TYPE" 
       TCGA-49-4505        TCGA-49-4506        TCGA-49-4507        TCGA-49-4510 
  "STXBP5L MUTATED" "STXBP5L WILD-TYPE" "STXBP5L WILD-TYPE" "STXBP5L WILD-TYPE" 
       TCGA-49-4512        TCGA-49-4514        TCGA-49-6742        TCGA-49-6743 
"STXBP5L WILD-TYPE" "STXBP5L WILD-TYPE" "STXBP5L WILD-TYPE" "STXBP5L WILD-TYPE" 
       TCGA-49-6744        TCGA-49-6745        TCGA-50-5044        TCGA-50-5045 
  "STXBP5L MUTATED" "STXBP5L WILD-TYPE" "STXBP5L WILD-TYPE" "STXBP5L WILD-TYPE" 
       TCGA-50-5049        TCGA-50-5051        TCGA-50-5055        TCGA-50-5066 
"STXBP5L WILD-TYPE" "STXBP5L WILD-TYPE" "STXBP5L WILD-TYPE" "STXBP5L WILD-TYPE" 
       TCGA-50-5068        TCGA-50-5072        TCGA-50-5930        TCGA-50-5931 
"STXBP5L WILD-TYPE" "STXBP5L WILD-TYPE" "STXBP5L WILD-TYPE" "STXBP5L WILD-TYPE" 
       TCGA-50-5932        TCGA-50-5933        TCGA-50-5935        TCGA-50-5936 
"STXBP5L WILD-TYPE" "STXBP5L WILD-TYPE" "STXBP5L WILD-TYPE" "STXBP5L WILD-TYPE" 
       TCGA-50-5939        TCGA-50-5941        TCGA-50-5942        TCGA-50-5944 
"STXBP5L WILD-TYPE"   "STXBP5L MUTATED" "STXBP5L WILD-TYPE" "STXBP5L WILD-TYPE" 
       TCGA-50-5946        TCGA-50-6590        TCGA-50-6591        TCGA-50-6592 
"STXBP5L WILD-TYPE" "STXBP5L WILD-TYPE" "STXBP5L WILD-TYPE" "STXBP5L WILD-TYPE" 
       TCGA-50-6593        TCGA-50-6594        TCGA-50-6595        TCGA-50-6597 
"STXBP5L WILD-TYPE" "STXBP5L WILD-TYPE" "STXBP5L WILD-TYPE" "STXBP5L WILD-TYPE" 
       TCGA-55-1592        TCGA-55-1594        TCGA-55-1595        TCGA-55-1596 
"STXBP5L WILD-TYPE" "STXBP5L WILD-TYPE" "STXBP5L WILD-TYPE" "STXBP5L WILD-TYPE" 
       TCGA-55-5899        TCGA-55-6543        TCGA-55-6642        TCGA-55-6712 
"STXBP5L WILD-TYPE" "STXBP5L WILD-TYPE" "STXBP5L WILD-TYPE" "STXBP5L WILD-TYPE" 
       TCGA-64-1676        TCGA-64-1677        TCGA-64-1678        TCGA-64-1680 
"STXBP5L WILD-TYPE" "STXBP5L WILD-TYPE" "STXBP5L WILD-TYPE" "STXBP5L WILD-TYPE" 
       TCGA-64-5774        TCGA-64-5775        TCGA-64-5778        TCGA-64-5779 
"STXBP5L WILD-TYPE" "STXBP5L WILD-TYPE" "STXBP5L WILD-TYPE" "STXBP5L WILD-TYPE" 
       TCGA-64-5781        TCGA-64-5815        TCGA-67-3770        TCGA-67-3771 
"STXBP5L WILD-TYPE" "STXBP5L WILD-TYPE" "STXBP5L WILD-TYPE" "STXBP5L WILD-TYPE" 
       TCGA-67-3772        TCGA-67-3773        TCGA-67-3774        TCGA-67-6215 
"STXBP5L WILD-TYPE" "STXBP5L WILD-TYPE" "STXBP5L WILD-TYPE" "STXBP5L WILD-TYPE" 
       TCGA-67-6216        TCGA-67-6217        TCGA-71-6725        TCGA-73-4658 
"STXBP5L WILD-TYPE"   "STXBP5L MUTATED" "STXBP5L WILD-TYPE" "STXBP5L WILD-TYPE" 
       TCGA-73-4659        TCGA-73-4662        TCGA-73-4666        TCGA-73-4668 
"STXBP5L WILD-TYPE" "STXBP5L WILD-TYPE" "STXBP5L WILD-TYPE" "STXBP5L WILD-TYPE" 
       TCGA-73-4670        TCGA-73-4675        TCGA-73-4676        TCGA-73-4677 
"STXBP5L WILD-TYPE" "STXBP5L WILD-TYPE" "STXBP5L WILD-TYPE" "STXBP5L WILD-TYPE" 
       TCGA-91-6828        TCGA-91-6829        TCGA-91-6831        TCGA-91-6835 
"STXBP5L WILD-TYPE" "STXBP5L WILD-TYPE" "STXBP5L WILD-TYPE" "STXBP5L WILD-TYPE" 
       TCGA-91-6836 
  "STXBP5L MUTATED" 
       TCGA-05-4249        TCGA-05-4250        TCGA-05-4382        TCGA-05-4384 
"STXBP5L WILD-TYPE" "STXBP5L WILD-TYPE" "STXBP5L WILD-TYPE" "STXBP5L WILD-TYPE" 
       TCGA-05-4390        TCGA-05-4396        TCGA-05-4397        TCGA-05-4398 
"STXBP5L WILD-TYPE"   "STXBP5L MUTATED" "STXBP5L WILD-TYPE" "STXBP5L WILD-TYPE" 
       TCGA-05-4402        TCGA-05-4405        TCGA-05-4415        TCGA-05-4417 
"STXBP5L WILD-TYPE" "STXBP5L WILD-TYPE" "STXBP5L WILD-TYPE" "STXBP5L WILD-TYPE" 
       TCGA-05-4418        TCGA-05-4420        TCGA-05-4424        TCGA-05-4426 
"STXBP5L WILD-TYPE" "STXBP5L WILD-TYPE" "STXBP5L WILD-TYPE" "STXBP5L WILD-TYPE" 
       TCGA-05-4427        TCGA-05-4430        TCGA-05-4432        TCGA-05-4433 
"STXBP5L WILD-TYPE" "STXBP5L WILD-TYPE" "STXBP5L WILD-TYPE" "STXBP5L WILD-TYPE" 
       TCGA-05-4434        TCGA-05-5420        TCGA-05-5423        TCGA-05-5425 
"STXBP5L WILD-TYPE" "STXBP5L WILD-TYPE" "STXBP5L WILD-TYPE" "STXBP5L WILD-TYPE" 
       TCGA-05-5429        TCGA-05-5715        TCGA-35-3615        TCGA-35-4122 
"STXBP5L WILD-TYPE" "STXBP5L WILD-TYPE" "STXBP5L WILD-TYPE" "STXBP5L WILD-TYPE" 
       TCGA-35-4123        TCGA-35-5375        TCGA-38-4625        TCGA-38-4626 
"STXBP5L WILD-TYPE" "STXBP5L WILD-TYPE"   "STXBP5L MUTATED"   "STXBP5L MUTATED" 
       TCGA-38-4627        TCGA-38-4628        TCGA-38-4629        TCGA-38-4630 
"STXBP5L WILD-TYPE" "STXBP5L WILD-TYPE" "STXBP5L WILD-TYPE" "STXBP5L WILD-TYPE" 
       TCGA-38-4631        TCGA-38-4632        TCGA-38-6178        TCGA-44-2655 
"STXBP5L WILD-TYPE" "STXBP5L WILD-TYPE" "STXBP5L WILD-TYPE" "STXBP5L WILD-TYPE" 
       TCGA-44-2656        TCGA-44-2657        TCGA-44-2659        TCGA-44-2661 
"STXBP5L WILD-TYPE" "STXBP5L WILD-TYPE"   "STXBP5L MUTATED" "STXBP5L WILD-TYPE" 
       TCGA-44-2662        TCGA-44-2665        TCGA-44-2666        TCGA-44-2668 
"STXBP5L WILD-TYPE" "STXBP5L WILD-TYPE" "STXBP5L WILD-TYPE" "STXBP5L WILD-TYPE" 
       TCGA-44-3396        TCGA-44-3398        TCGA-44-3918        TCGA-44-3919 
"STXBP5L WILD-TYPE" "STXBP5L WILD-TYPE" "STXBP5L WILD-TYPE" "STXBP5L WILD-TYPE" 
       TCGA-44-4112        TCGA-44-5643        TCGA-44-5645        TCGA-44-6144 
  "STXBP5L MUTATED" "STXBP5L WILD-TYPE" "STXBP5L WILD-TYPE" "STXBP5L WILD-TYPE" 
       TCGA-44-6145        TCGA-44-6146        TCGA-44-6147        TCGA-44-6148 
"STXBP5L WILD-TYPE" "STXBP5L WILD-TYPE" "STXBP5L WILD-TYPE" "STXBP5L WILD-TYPE" 
       TCGA-44-6774        TCGA-44-6775        TCGA-44-6776        TCGA-44-6777 
"STXBP5L WILD-TYPE" "STXBP5L WILD-TYPE" "STXBP5L WILD-TYPE" "STXBP5L WILD-TYPE" 
       TCGA-44-6778        TCGA-44-6779        TCGA-49-4486        TCGA-49-4487 
  "STXBP5L MUTATED" "STXBP5L WILD-TYPE" "STXBP5L WILD-TYPE" "STXBP5L WILD-TYPE" 
       TCGA-49-4488        TCGA-49-4490        TCGA-49-4494        TCGA-49-4501 
"STXBP5L WILD-TYPE" "STXBP5L WILD-TYPE" "STXBP5L WILD-TYPE" "STXBP5L WILD-TYPE" 
       TCGA-49-4505        TCGA-49-4506        TCGA-49-4507        TCGA-49-4510 
  "STXBP5L MUTATED" "STXBP5L WILD-TYPE" "STXBP5L WILD-TYPE" "STXBP5L WILD-TYPE" 
       TCGA-49-4512        TCGA-49-4514        TCGA-49-6742        TCGA-49-6743 
"STXBP5L WILD-TYPE" "STXBP5L WILD-TYPE" "STXBP5L WILD-TYPE" "STXBP5L WILD-TYPE" 
       TCGA-49-6744        TCGA-49-6745        TCGA-50-5044        TCGA-50-5045 
  "STXBP5L MUTATED" "STXBP5L WILD-TYPE" "STXBP5L WILD-TYPE" "STXBP5L WILD-TYPE" 
       TCGA-50-5049        TCGA-50-5051        TCGA-50-5055        TCGA-50-5066 
"STXBP5L WILD-TYPE" "STXBP5L WILD-TYPE" "STXBP5L WILD-TYPE" "STXBP5L WILD-TYPE" 
       TCGA-50-5068        TCGA-50-5072        TCGA-50-5930        TCGA-50-5931 
"STXBP5L WILD-TYPE" "STXBP5L WILD-TYPE" "STXBP5L WILD-TYPE" "STXBP5L WILD-TYPE" 
       TCGA-50-5932        TCGA-50-5933        TCGA-50-5935        TCGA-50-5936 
"STXBP5L WILD-TYPE" "STXBP5L WILD-TYPE" "STXBP5L WILD-TYPE" "STXBP5L WILD-TYPE" 
       TCGA-50-5939        TCGA-50-5941        TCGA-50-5942        TCGA-50-5944 
"STXBP5L WILD-TYPE"   "STXBP5L MUTATED" "STXBP5L WILD-TYPE" "STXBP5L WILD-TYPE" 
       TCGA-50-5946        TCGA-50-6590        TCGA-50-6591        TCGA-50-6592 
"STXBP5L WILD-TYPE" "STXBP5L WILD-TYPE" "STXBP5L WILD-TYPE" "STXBP5L WILD-TYPE" 
       TCGA-50-6593        TCGA-50-6594        TCGA-50-6595        TCGA-50-6597 
"STXBP5L WILD-TYPE" "STXBP5L WILD-TYPE" "STXBP5L WILD-TYPE" "STXBP5L WILD-TYPE" 
       TCGA-55-1592        TCGA-55-1594        TCGA-55-1595        TCGA-55-1596 
"STXBP5L WILD-TYPE" "STXBP5L WILD-TYPE" "STXBP5L WILD-TYPE" "STXBP5L WILD-TYPE" 
       TCGA-55-5899        TCGA-55-6543        TCGA-55-6642        TCGA-55-6712 
"STXBP5L WILD-TYPE" "STXBP5L WILD-TYPE" "STXBP5L WILD-TYPE" "STXBP5L WILD-TYPE" 
       TCGA-64-1676        TCGA-64-1677        TCGA-64-1678        TCGA-64-1680 
"STXBP5L WILD-TYPE" "STXBP5L WILD-TYPE" "STXBP5L WILD-TYPE" "STXBP5L WILD-TYPE" 
       TCGA-64-5774        TCGA-64-5775        TCGA-64-5778        TCGA-64-5779 
"STXBP5L WILD-TYPE" "STXBP5L WILD-TYPE" "STXBP5L WILD-TYPE" "STXBP5L WILD-TYPE" 
       TCGA-64-5781        TCGA-64-5815        TCGA-67-3770        TCGA-67-3771 
"STXBP5L WILD-TYPE" "STXBP5L WILD-TYPE" "STXBP5L WILD-TYPE" "STXBP5L WILD-TYPE" 
       TCGA-67-3772        TCGA-67-3773        TCGA-67-3774        TCGA-67-6215 
"STXBP5L WILD-TYPE" "STXBP5L WILD-TYPE" "STXBP5L WILD-TYPE" "STXBP5L WILD-TYPE" 
       TCGA-67-6216        TCGA-67-6217        TCGA-71-6725        TCGA-73-4658 
"STXBP5L WILD-TYPE"   "STXBP5L MUTATED" "STXBP5L WILD-TYPE" "STXBP5L WILD-TYPE" 
       TCGA-73-4659        TCGA-73-4662        TCGA-73-4666        TCGA-73-4668 
"STXBP5L WILD-TYPE" "STXBP5L WILD-TYPE" "STXBP5L WILD-TYPE" "STXBP5L WILD-TYPE" 
       TCGA-73-4670        TCGA-73-4675        TCGA-73-4676        TCGA-73-4677 
"STXBP5L WILD-TYPE" "STXBP5L WILD-TYPE" "STXBP5L WILD-TYPE" "STXBP5L WILD-TYPE" 
       TCGA-91-6828        TCGA-91-6829        TCGA-91-6831        TCGA-91-6835 
"STXBP5L WILD-TYPE" "STXBP5L WILD-TYPE" "STXBP5L WILD-TYPE" "STXBP5L WILD-TYPE" 
       TCGA-91-6836 
  "STXBP5L MUTATED" 
       TCGA-05-4249        TCGA-05-4250        TCGA-05-4382        TCGA-05-4384 
"STXBP5L WILD-TYPE" "STXBP5L WILD-TYPE" "STXBP5L WILD-TYPE" "STXBP5L WILD-TYPE" 
       TCGA-05-4390        TCGA-05-4396        TCGA-05-4397        TCGA-05-4398 
"STXBP5L WILD-TYPE"   "STXBP5L MUTATED" "STXBP5L WILD-TYPE" "STXBP5L WILD-TYPE" 
       TCGA-05-4402        TCGA-05-4405        TCGA-05-4415        TCGA-05-4417 
"STXBP5L WILD-TYPE" "STXBP5L WILD-TYPE" "STXBP5L WILD-TYPE" "STXBP5L WILD-TYPE" 
       TCGA-05-4418        TCGA-05-4420        TCGA-05-4424        TCGA-05-4426 
"STXBP5L WILD-TYPE" "STXBP5L WILD-TYPE" "STXBP5L WILD-TYPE" "STXBP5L WILD-TYPE" 
       TCGA-05-4427        TCGA-05-4430        TCGA-05-4432        TCGA-05-4433 
"STXBP5L WILD-TYPE" "STXBP5L WILD-TYPE" "STXBP5L WILD-TYPE" "STXBP5L WILD-TYPE" 
       TCGA-05-4434        TCGA-05-5420        TCGA-05-5423        TCGA-05-5425 
"STXBP5L WILD-TYPE" "STXBP5L WILD-TYPE" "STXBP5L WILD-TYPE" "STXBP5L WILD-TYPE" 
       TCGA-05-5429        TCGA-05-5715        TCGA-35-3615        TCGA-35-4122 
"STXBP5L WILD-TYPE" "STXBP5L WILD-TYPE" "STXBP5L WILD-TYPE" "STXBP5L WILD-TYPE" 
       TCGA-35-4123        TCGA-35-5375        TCGA-38-4625        TCGA-38-4626 
"STXBP5L WILD-TYPE" "STXBP5L WILD-TYPE"   "STXBP5L MUTATED"   "STXBP5L MUTATED" 
       TCGA-38-4627        TCGA-38-4628        TCGA-38-4629        TCGA-38-4630 
"STXBP5L WILD-TYPE" "STXBP5L WILD-TYPE" "STXBP5L WILD-TYPE" "STXBP5L WILD-TYPE" 
       TCGA-38-4631        TCGA-38-4632        TCGA-38-6178        TCGA-44-2655 
"STXBP5L WILD-TYPE" "STXBP5L WILD-TYPE" "STXBP5L WILD-TYPE" "STXBP5L WILD-TYPE" 
       TCGA-44-2656        TCGA-44-2657        TCGA-44-2659        TCGA-44-2661 
"STXBP5L WILD-TYPE" "STXBP5L WILD-TYPE"   "STXBP5L MUTATED" "STXBP5L WILD-TYPE" 
       TCGA-44-2662        TCGA-44-2665        TCGA-44-2666        TCGA-44-2668 
"STXBP5L WILD-TYPE" "STXBP5L WILD-TYPE" "STXBP5L WILD-TYPE" "STXBP5L WILD-TYPE" 
       TCGA-44-3396        TCGA-44-3398        TCGA-44-3918        TCGA-44-3919 
"STXBP5L WILD-TYPE" "STXBP5L WILD-TYPE" "STXBP5L WILD-TYPE" "STXBP5L WILD-TYPE" 
       TCGA-44-4112        TCGA-44-5643        TCGA-44-5645        TCGA-44-6144 
  "STXBP5L MUTATED" "STXBP5L WILD-TYPE" "STXBP5L WILD-TYPE" "STXBP5L WILD-TYPE" 
       TCGA-44-6145        TCGA-44-6146        TCGA-44-6147        TCGA-44-6148 
"STXBP5L WILD-TYPE" "STXBP5L WILD-TYPE" "STXBP5L WILD-TYPE" "STXBP5L WILD-TYPE" 
       TCGA-44-6774        TCGA-44-6775        TCGA-44-6776        TCGA-44-6777 
"STXBP5L WILD-TYPE" "STXBP5L WILD-TYPE" "STXBP5L WILD-TYPE" "STXBP5L WILD-TYPE" 
       TCGA-44-6778        TCGA-44-6779        TCGA-49-4486        TCGA-49-4487 
  "STXBP5L MUTATED" "STXBP5L WILD-TYPE" "STXBP5L WILD-TYPE" "STXBP5L WILD-TYPE" 
       TCGA-49-4488        TCGA-49-4490        TCGA-49-4494        TCGA-49-4501 
"STXBP5L WILD-TYPE" "STXBP5L WILD-TYPE" "STXBP5L WILD-TYPE" "STXBP5L WILD-TYPE" 
       TCGA-49-4505        TCGA-49-4506        TCGA-49-4507        TCGA-49-4510 
  "STXBP5L MUTATED" "STXBP5L WILD-TYPE" "STXBP5L WILD-TYPE" "STXBP5L WILD-TYPE" 
       TCGA-49-4512        TCGA-49-4514        TCGA-49-6742        TCGA-49-6743 
"STXBP5L WILD-TYPE" "STXBP5L WILD-TYPE" "STXBP5L WILD-TYPE" "STXBP5L WILD-TYPE" 
       TCGA-49-6744        TCGA-49-6745        TCGA-50-5044        TCGA-50-5045 
  "STXBP5L MUTATED" "STXBP5L WILD-TYPE" "STXBP5L WILD-TYPE" "STXBP5L WILD-TYPE" 
       TCGA-50-5049        TCGA-50-5051        TCGA-50-5055        TCGA-50-5066 
"STXBP5L WILD-TYPE" "STXBP5L WILD-TYPE" "STXBP5L WILD-TYPE" "STXBP5L WILD-TYPE" 
       TCGA-50-5068        TCGA-50-5072        TCGA-50-5930        TCGA-50-5931 
"STXBP5L WILD-TYPE" "STXBP5L WILD-TYPE" "STXBP5L WILD-TYPE" "STXBP5L WILD-TYPE" 
       TCGA-50-5932        TCGA-50-5933        TCGA-50-5935        TCGA-50-5936 
"STXBP5L WILD-TYPE" "STXBP5L WILD-TYPE" "STXBP5L WILD-TYPE" "STXBP5L WILD-TYPE" 
       TCGA-50-5939        TCGA-50-5941        TCGA-50-5942        TCGA-50-5944 
"STXBP5L WILD-TYPE"   "STXBP5L MUTATED" "STXBP5L WILD-TYPE" "STXBP5L WILD-TYPE" 
       TCGA-50-5946        TCGA-50-6590        TCGA-50-6591        TCGA-50-6592 
"STXBP5L WILD-TYPE" "STXBP5L WILD-TYPE" "STXBP5L WILD-TYPE" "STXBP5L WILD-TYPE" 
       TCGA-50-6593        TCGA-50-6594        TCGA-50-6595        TCGA-50-6597 
"STXBP5L WILD-TYPE" "STXBP5L WILD-TYPE" "STXBP5L WILD-TYPE" "STXBP5L WILD-TYPE" 
       TCGA-55-1592        TCGA-55-1594        TCGA-55-1595        TCGA-55-1596 
"STXBP5L WILD-TYPE" "STXBP5L WILD-TYPE" "STXBP5L WILD-TYPE" "STXBP5L WILD-TYPE" 
       TCGA-55-5899        TCGA-55-6543        TCGA-55-6642        TCGA-55-6712 
"STXBP5L WILD-TYPE" "STXBP5L WILD-TYPE" "STXBP5L WILD-TYPE" "STXBP5L WILD-TYPE" 
       TCGA-64-1676        TCGA-64-1677        TCGA-64-1678        TCGA-64-1680 
"STXBP5L WILD-TYPE" "STXBP5L WILD-TYPE" "STXBP5L WILD-TYPE" "STXBP5L WILD-TYPE" 
       TCGA-64-5774        TCGA-64-5775        TCGA-64-5778        TCGA-64-5779 
"STXBP5L WILD-TYPE" "STXBP5L WILD-TYPE" "STXBP5L WILD-TYPE" "STXBP5L WILD-TYPE" 
       TCGA-64-5781        TCGA-64-5815        TCGA-67-3770        TCGA-67-3771 
"STXBP5L WILD-TYPE" "STXBP5L WILD-TYPE" "STXBP5L WILD-TYPE" "STXBP5L WILD-TYPE" 
       TCGA-67-3772        TCGA-67-3773        TCGA-67-3774        TCGA-67-6215 
"STXBP5L WILD-TYPE" "STXBP5L WILD-TYPE" "STXBP5L WILD-TYPE" "STXBP5L WILD-TYPE" 
       TCGA-67-6216        TCGA-67-6217        TCGA-71-6725        TCGA-73-4658 
"STXBP5L WILD-TYPE"   "STXBP5L MUTATED" "STXBP5L WILD-TYPE" "STXBP5L WILD-TYPE" 
       TCGA-73-4659        TCGA-73-4662        TCGA-73-4666        TCGA-73-4668 
"STXBP5L WILD-TYPE" "STXBP5L WILD-TYPE" "STXBP5L WILD-TYPE" "STXBP5L WILD-TYPE" 
       TCGA-73-4670        TCGA-73-4675        TCGA-73-4676        TCGA-73-4677 
"STXBP5L WILD-TYPE" "STXBP5L WILD-TYPE" "STXBP5L WILD-TYPE" "STXBP5L WILD-TYPE" 
       TCGA-91-6828        TCGA-91-6829        TCGA-91-6831        TCGA-91-6835 
"STXBP5L WILD-TYPE" "STXBP5L WILD-TYPE" "STXBP5L WILD-TYPE" "STXBP5L WILD-TYPE" 
       TCGA-91-6836 
  "STXBP5L MUTATED" 
[1] "hr=" "2.5"
D175V2, continuous
D175V3, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  STXBP5L MUTATED      9    3
  STXBP5L WILD-TYPE   84   76
        clus
vv       STXBP5L MUTATED STXBP5L WILD-TYPE
  FEMALE               9                84
  MALE                 3                76
D175V4, continuous
D175V5, multiclass
D175V6, multiclass
    clus
vv   STXBP5L MUTATED STXBP5L WILD-TYPE
  T1               2                39
  T2               9                99
  T3               0                14
  T4               1                 7
D175V7, multiclass
       clus
vv      STXBP5L MUTATED STXBP5L WILD-TYPE
  N0                  6                89
  N1                  5                32
  N2+N3               1                34
D175V8, multiclass
    clus
vv   STXBP5L MUTATED STXBP5L WILD-TYPE
  M0               9               128
  M1               0                 9
  MX               3                19
D175V9, multiclass
     clus
vv    STXBP5L MUTATED STXBP5L WILD-TYPE
  I                 5                83
  II                5                28
  III               2                37
  IV                0                 9
D175V10, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  STXBP5L MUTATED      0   12
  STXBP5L WILD-TYPE   16  144
     clus
vv    STXBP5L MUTATED STXBP5L WILD-TYPE
  NO                0                16
  YES              12               144
D175V11, continuous
D175V12, continuous
D175V13, multiclass
                                             clus
vv                                            STXBP5L MUTATED STXBP5L WILD-TYPE
  CURRENT REFORMED SMOKER FOR < OR = 15 YEARS               5                57
  CURRENT REFORMED SMOKER FOR > 15 YEARS                    3                43
  CURRENT SMOKER                                            4                24
  LIFELONG NON-SMOKER                                       0                24
D175V14, continuous

Clustering(176) Variable = CCDC73 MUTATION ANALYSIS
D176V1, survival
                  sevent
clus2               0  1
  CCDC73 MUTATED    7  3
  CCDC73 WILD-TYPE 92 47
  CCDC73 MUTATED CCDC73 WILD-TYPE 
              10              139 
  CCDC73 MUTATED CCDC73 WILD-TYPE 
               3               47 
$`CCDC73 MUTATED`
TCGA-05-5423 TCGA-38-4625 TCGA-44-6147 TCGA-49-4488 TCGA-50-5049 TCGA-50-5051 
        4.96        47.61         7.76        28.57        48.82        14.96 
TCGA-50-6594 TCGA-55-1595 TCGA-55-5899 TCGA-91-6829 
       12.16        48.62         2.86        41.33 

$`CCDC73 WILD-TYPE`
TCGA-05-4249 TCGA-05-4250 TCGA-05-4382 TCGA-05-4384 TCGA-05-4390 TCGA-05-4396 
       38.07         3.98        19.92        14.01        37.02         9.96 
TCGA-05-4397 TCGA-05-4398 TCGA-05-4402 TCGA-05-4405 TCGA-05-4415 TCGA-05-4417 
       24.03        47.05         8.02        20.05         2.96        14.93 
TCGA-05-4418 TCGA-05-4420 TCGA-05-4424 TCGA-05-4426 TCGA-05-4427 TCGA-05-4430 
        8.98        29.95        30.02        26.01        26.01        25.02 
TCGA-05-4432 TCGA-05-4433 TCGA-05-4434 TCGA-05-5420 TCGA-05-5425 TCGA-05-5429 
       25.02        24.00        15.02         1.02         2.96         0.99 
TCGA-05-5715 TCGA-35-3615 TCGA-35-4122 TCGA-35-4123 TCGA-35-5375 TCGA-38-4626 
        2.04         0.46         7.36         5.95         8.68        85.32 
TCGA-38-4627 TCGA-38-4628 TCGA-38-4629 TCGA-38-4630 TCGA-38-4631 TCGA-38-4632 
       37.71        49.02        28.37        35.28        11.64        44.61 
TCGA-38-6178 TCGA-44-2655 TCGA-44-2656 TCGA-44-2657 TCGA-44-2659 TCGA-44-2661 
        5.19        18.87        19.10        13.15        17.39         3.39 
TCGA-44-2662 TCGA-44-2665 TCGA-44-2666 TCGA-44-2668 TCGA-44-3396 TCGA-44-3398 
       15.78        13.15         3.19         8.09        10.22         8.32 
TCGA-44-3918 TCGA-44-3919 TCGA-44-4112 TCGA-44-5643 TCGA-44-5645 TCGA-44-6144 
        6.44         6.21         4.60         3.48         6.84         0.30 
TCGA-44-6145 TCGA-44-6146 TCGA-44-6148 TCGA-44-6774 TCGA-44-6775 TCGA-44-6776 
        3.35         9.93         3.12         5.42         2.70        63.72 
TCGA-44-6777 TCGA-44-6778 TCGA-44-6779 TCGA-49-4486 TCGA-49-4487 TCGA-49-4490 
       32.45        36.49        16.41        76.21        28.11        12.66 
TCGA-49-4494 TCGA-49-4501 TCGA-49-4505 TCGA-49-4506 TCGA-49-4507 TCGA-49-4510 
       35.54        46.72        14.07        32.84         8.81        29.46 
TCGA-49-4512 TCGA-49-4514 TCGA-49-6742 TCGA-49-6743 TCGA-49-6744 TCGA-49-6745 
       29.75        43.20        15.02        12.13        12.99         4.93 
TCGA-50-5044 TCGA-50-5045 TCGA-50-5055 TCGA-50-5066 TCGA-50-5068 TCGA-50-5072 
       20.48        71.47        25.81         9.76        49.28         8.05 
TCGA-50-5930 TCGA-50-5931 TCGA-50-5932 TCGA-50-5933 TCGA-50-5935 TCGA-50-5936 
        9.27         8.78        35.87        77.88        21.47         8.45 
TCGA-50-5939 TCGA-50-5941 TCGA-50-5942 TCGA-50-5944 TCGA-50-5946 TCGA-50-6590 
       15.12         9.37         4.44        12.26        11.47        42.31 
TCGA-50-6591 TCGA-50-6592 TCGA-50-6593 TCGA-50-6595 TCGA-50-6597 TCGA-55-1592 
        3.88        25.51        11.05         6.21        33.37        23.05 
TCGA-55-1594 TCGA-55-1596 TCGA-55-6543 TCGA-55-6642 TCGA-55-6712 TCGA-64-1676 
       38.73        45.17         0.07        32.61         0.79        56.81 
TCGA-64-1677 TCGA-64-1678 TCGA-64-1680 TCGA-64-5774 TCGA-64-5775 TCGA-64-5778 
       20.65        39.09        37.02        83.84         0.10        30.44 
TCGA-64-5779 TCGA-64-5781 TCGA-64-5815 TCGA-67-3770 TCGA-67-3771 TCGA-67-3772 
       16.67        39.52         7.33         0.99         1.97         0.59 
TCGA-67-3773 TCGA-67-3774 TCGA-67-6215 TCGA-67-6216 TCGA-67-6217 TCGA-71-6725 
        2.04         0.59         0.89         0.69        13.87         2.01 
TCGA-73-4658 TCGA-73-4659 TCGA-73-4662 TCGA-73-4666 TCGA-73-4668 TCGA-73-4670 
       52.57        23.38        29.95        20.28        15.35         0.46 
TCGA-73-4675 TCGA-73-4676 TCGA-73-4677 TCGA-91-6828 TCGA-91-6831 TCGA-91-6835 
        1.32         4.01         1.25         1.22         1.28         1.15 
TCGA-91-6836 
        0.36 

  CCDC73 MUTATED CCDC73 WILD-TYPE 
            2.86             0.07 
  CCDC73 MUTATED CCDC73 WILD-TYPE 
           48.82            85.32 
  CCDC73 MUTATED CCDC73 WILD-TYPE 
          21.765           13.150 
[1] "2.9 - 48.8 (21.8)" "0.1 - 85.3 (13.2)"
      TCGA-05-4249       TCGA-05-4250       TCGA-05-4382       TCGA-05-4384 
"CCDC73 WILD-TYPE" "CCDC73 WILD-TYPE" "CCDC73 WILD-TYPE" "CCDC73 WILD-TYPE" 
      TCGA-05-4390       TCGA-05-4396       TCGA-05-4397       TCGA-05-4398 
"CCDC73 WILD-TYPE" "CCDC73 WILD-TYPE" "CCDC73 WILD-TYPE" "CCDC73 WILD-TYPE" 
      TCGA-05-4402       TCGA-05-4405       TCGA-05-4415       TCGA-05-4417 
"CCDC73 WILD-TYPE" "CCDC73 WILD-TYPE" "CCDC73 WILD-TYPE" "CCDC73 WILD-TYPE" 
      TCGA-05-4418       TCGA-05-4420       TCGA-05-4424       TCGA-05-4426 
"CCDC73 WILD-TYPE" "CCDC73 WILD-TYPE" "CCDC73 WILD-TYPE" "CCDC73 WILD-TYPE" 
      TCGA-05-4427       TCGA-05-4430       TCGA-05-4432       TCGA-05-4433 
"CCDC73 WILD-TYPE" "CCDC73 WILD-TYPE" "CCDC73 WILD-TYPE" "CCDC73 WILD-TYPE" 
      TCGA-05-4434       TCGA-05-5420       TCGA-05-5423       TCGA-05-5425 
"CCDC73 WILD-TYPE" "CCDC73 WILD-TYPE"   "CCDC73 MUTATED" "CCDC73 WILD-TYPE" 
      TCGA-05-5429       TCGA-05-5715       TCGA-35-3615       TCGA-35-4122 
"CCDC73 WILD-TYPE" "CCDC73 WILD-TYPE" "CCDC73 WILD-TYPE" "CCDC73 WILD-TYPE" 
      TCGA-35-4123       TCGA-35-5375       TCGA-38-4625       TCGA-38-4626 
"CCDC73 WILD-TYPE" "CCDC73 WILD-TYPE"   "CCDC73 MUTATED" "CCDC73 WILD-TYPE" 
      TCGA-38-4627       TCGA-38-4628       TCGA-38-4629       TCGA-38-4630 
"CCDC73 WILD-TYPE" "CCDC73 WILD-TYPE" "CCDC73 WILD-TYPE" "CCDC73 WILD-TYPE" 
      TCGA-38-4631       TCGA-38-4632       TCGA-38-6178       TCGA-44-2655 
"CCDC73 WILD-TYPE" "CCDC73 WILD-TYPE" "CCDC73 WILD-TYPE" "CCDC73 WILD-TYPE" 
      TCGA-44-2656       TCGA-44-2657       TCGA-44-2659       TCGA-44-2661 
"CCDC73 WILD-TYPE" "CCDC73 WILD-TYPE" "CCDC73 WILD-TYPE" "CCDC73 WILD-TYPE" 
      TCGA-44-2662       TCGA-44-2665       TCGA-44-2666       TCGA-44-2668 
"CCDC73 WILD-TYPE" "CCDC73 WILD-TYPE" "CCDC73 WILD-TYPE" "CCDC73 WILD-TYPE" 
      TCGA-44-3396       TCGA-44-3398       TCGA-44-3918       TCGA-44-3919 
"CCDC73 WILD-TYPE" "CCDC73 WILD-TYPE" "CCDC73 WILD-TYPE" "CCDC73 WILD-TYPE" 
      TCGA-44-4112       TCGA-44-5643       TCGA-44-5645       TCGA-44-6144 
"CCDC73 WILD-TYPE" "CCDC73 WILD-TYPE" "CCDC73 WILD-TYPE" "CCDC73 WILD-TYPE" 
      TCGA-44-6145       TCGA-44-6146       TCGA-44-6147       TCGA-44-6148 
"CCDC73 WILD-TYPE" "CCDC73 WILD-TYPE"   "CCDC73 MUTATED" "CCDC73 WILD-TYPE" 
      TCGA-44-6774       TCGA-44-6775       TCGA-44-6776       TCGA-44-6777 
"CCDC73 WILD-TYPE" "CCDC73 WILD-TYPE" "CCDC73 WILD-TYPE" "CCDC73 WILD-TYPE" 
      TCGA-44-6778       TCGA-44-6779       TCGA-49-4486       TCGA-49-4487 
"CCDC73 WILD-TYPE" "CCDC73 WILD-TYPE" "CCDC73 WILD-TYPE" "CCDC73 WILD-TYPE" 
      TCGA-49-4488       TCGA-49-4490       TCGA-49-4494       TCGA-49-4501 
  "CCDC73 MUTATED" "CCDC73 WILD-TYPE" "CCDC73 WILD-TYPE" "CCDC73 WILD-TYPE" 
      TCGA-49-4505       TCGA-49-4506       TCGA-49-4507       TCGA-49-4510 
"CCDC73 WILD-TYPE" "CCDC73 WILD-TYPE" "CCDC73 WILD-TYPE" "CCDC73 WILD-TYPE" 
      TCGA-49-4512       TCGA-49-4514       TCGA-49-6742       TCGA-49-6743 
"CCDC73 WILD-TYPE" "CCDC73 WILD-TYPE" "CCDC73 WILD-TYPE" "CCDC73 WILD-TYPE" 
      TCGA-49-6744       TCGA-49-6745       TCGA-50-5044       TCGA-50-5045 
"CCDC73 WILD-TYPE" "CCDC73 WILD-TYPE" "CCDC73 WILD-TYPE" "CCDC73 WILD-TYPE" 
      TCGA-50-5049       TCGA-50-5051       TCGA-50-5055       TCGA-50-5066 
  "CCDC73 MUTATED"   "CCDC73 MUTATED" "CCDC73 WILD-TYPE" "CCDC73 WILD-TYPE" 
      TCGA-50-5068       TCGA-50-5072       TCGA-50-5930       TCGA-50-5931 
"CCDC73 WILD-TYPE" "CCDC73 WILD-TYPE" "CCDC73 WILD-TYPE" "CCDC73 WILD-TYPE" 
      TCGA-50-5932       TCGA-50-5933       TCGA-50-5935       TCGA-50-5936 
"CCDC73 WILD-TYPE" "CCDC73 WILD-TYPE" "CCDC73 WILD-TYPE" "CCDC73 WILD-TYPE" 
      TCGA-50-5939       TCGA-50-5941       TCGA-50-5942       TCGA-50-5944 
"CCDC73 WILD-TYPE" "CCDC73 WILD-TYPE" "CCDC73 WILD-TYPE" "CCDC73 WILD-TYPE" 
      TCGA-50-5946       TCGA-50-6590       TCGA-50-6591       TCGA-50-6592 
"CCDC73 WILD-TYPE" "CCDC73 WILD-TYPE" "CCDC73 WILD-TYPE" "CCDC73 WILD-TYPE" 
      TCGA-50-6593       TCGA-50-6594       TCGA-50-6595       TCGA-50-6597 
"CCDC73 WILD-TYPE"   "CCDC73 MUTATED" "CCDC73 WILD-TYPE" "CCDC73 WILD-TYPE" 
      TCGA-55-1592       TCGA-55-1594       TCGA-55-1595       TCGA-55-1596 
"CCDC73 WILD-TYPE" "CCDC73 WILD-TYPE"   "CCDC73 MUTATED" "CCDC73 WILD-TYPE" 
      TCGA-55-5899       TCGA-55-6543       TCGA-55-6642       TCGA-55-6712 
  "CCDC73 MUTATED" "CCDC73 WILD-TYPE" "CCDC73 WILD-TYPE" "CCDC73 WILD-TYPE" 
      TCGA-64-1676       TCGA-64-1677       TCGA-64-1678       TCGA-64-1680 
"CCDC73 WILD-TYPE" "CCDC73 WILD-TYPE" "CCDC73 WILD-TYPE" "CCDC73 WILD-TYPE" 
      TCGA-64-5774       TCGA-64-5775       TCGA-64-5778       TCGA-64-5779 
"CCDC73 WILD-TYPE" "CCDC73 WILD-TYPE" "CCDC73 WILD-TYPE" "CCDC73 WILD-TYPE" 
      TCGA-64-5781       TCGA-64-5815       TCGA-67-3770       TCGA-67-3771 
"CCDC73 WILD-TYPE" "CCDC73 WILD-TYPE" "CCDC73 WILD-TYPE" "CCDC73 WILD-TYPE" 
      TCGA-67-3772       TCGA-67-3773       TCGA-67-3774       TCGA-67-6215 
"CCDC73 WILD-TYPE" "CCDC73 WILD-TYPE" "CCDC73 WILD-TYPE" "CCDC73 WILD-TYPE" 
      TCGA-67-6216       TCGA-67-6217       TCGA-71-6725       TCGA-73-4658 
"CCDC73 WILD-TYPE" "CCDC73 WILD-TYPE" "CCDC73 WILD-TYPE" "CCDC73 WILD-TYPE" 
      TCGA-73-4659       TCGA-73-4662       TCGA-73-4666       TCGA-73-4668 
"CCDC73 WILD-TYPE" "CCDC73 WILD-TYPE" "CCDC73 WILD-TYPE" "CCDC73 WILD-TYPE" 
      TCGA-73-4670       TCGA-73-4675       TCGA-73-4676       TCGA-73-4677 
"CCDC73 WILD-TYPE" "CCDC73 WILD-TYPE" "CCDC73 WILD-TYPE" "CCDC73 WILD-TYPE" 
      TCGA-91-6828       TCGA-91-6829       TCGA-91-6831       TCGA-91-6835 
"CCDC73 WILD-TYPE"   "CCDC73 MUTATED" "CCDC73 WILD-TYPE" "CCDC73 WILD-TYPE" 
      TCGA-91-6836 
"CCDC73 WILD-TYPE" 
      TCGA-05-4249       TCGA-05-4250       TCGA-05-4382       TCGA-05-4384 
"CCDC73 WILD-TYPE" "CCDC73 WILD-TYPE" "CCDC73 WILD-TYPE" "CCDC73 WILD-TYPE" 
      TCGA-05-4390       TCGA-05-4396       TCGA-05-4397       TCGA-05-4398 
"CCDC73 WILD-TYPE" "CCDC73 WILD-TYPE" "CCDC73 WILD-TYPE" "CCDC73 WILD-TYPE" 
      TCGA-05-4402       TCGA-05-4405       TCGA-05-4415       TCGA-05-4417 
"CCDC73 WILD-TYPE" "CCDC73 WILD-TYPE" "CCDC73 WILD-TYPE" "CCDC73 WILD-TYPE" 
      TCGA-05-4418       TCGA-05-4420       TCGA-05-4424       TCGA-05-4426 
"CCDC73 WILD-TYPE" "CCDC73 WILD-TYPE" "CCDC73 WILD-TYPE" "CCDC73 WILD-TYPE" 
      TCGA-05-4427       TCGA-05-4430       TCGA-05-4432       TCGA-05-4433 
"CCDC73 WILD-TYPE" "CCDC73 WILD-TYPE" "CCDC73 WILD-TYPE" "CCDC73 WILD-TYPE" 
      TCGA-05-4434       TCGA-05-5420       TCGA-05-5423       TCGA-05-5425 
"CCDC73 WILD-TYPE" "CCDC73 WILD-TYPE"   "CCDC73 MUTATED" "CCDC73 WILD-TYPE" 
      TCGA-05-5429       TCGA-05-5715       TCGA-35-3615       TCGA-35-4122 
"CCDC73 WILD-TYPE" "CCDC73 WILD-TYPE" "CCDC73 WILD-TYPE" "CCDC73 WILD-TYPE" 
      TCGA-35-4123       TCGA-35-5375       TCGA-38-4625       TCGA-38-4626 
"CCDC73 WILD-TYPE" "CCDC73 WILD-TYPE"   "CCDC73 MUTATED" "CCDC73 WILD-TYPE" 
      TCGA-38-4627       TCGA-38-4628       TCGA-38-4629       TCGA-38-4630 
"CCDC73 WILD-TYPE" "CCDC73 WILD-TYPE" "CCDC73 WILD-TYPE" "CCDC73 WILD-TYPE" 
      TCGA-38-4631       TCGA-38-4632       TCGA-38-6178       TCGA-44-2655 
"CCDC73 WILD-TYPE" "CCDC73 WILD-TYPE" "CCDC73 WILD-TYPE" "CCDC73 WILD-TYPE" 
      TCGA-44-2656       TCGA-44-2657       TCGA-44-2659       TCGA-44-2661 
"CCDC73 WILD-TYPE" "CCDC73 WILD-TYPE" "CCDC73 WILD-TYPE" "CCDC73 WILD-TYPE" 
      TCGA-44-2662       TCGA-44-2665       TCGA-44-2666       TCGA-44-2668 
"CCDC73 WILD-TYPE" "CCDC73 WILD-TYPE" "CCDC73 WILD-TYPE" "CCDC73 WILD-TYPE" 
      TCGA-44-3396       TCGA-44-3398       TCGA-44-3918       TCGA-44-3919 
"CCDC73 WILD-TYPE" "CCDC73 WILD-TYPE" "CCDC73 WILD-TYPE" "CCDC73 WILD-TYPE" 
      TCGA-44-4112       TCGA-44-5643       TCGA-44-5645       TCGA-44-6144 
"CCDC73 WILD-TYPE" "CCDC73 WILD-TYPE" "CCDC73 WILD-TYPE" "CCDC73 WILD-TYPE" 
      TCGA-44-6145       TCGA-44-6146       TCGA-44-6147       TCGA-44-6148 
"CCDC73 WILD-TYPE" "CCDC73 WILD-TYPE"   "CCDC73 MUTATED" "CCDC73 WILD-TYPE" 
      TCGA-44-6774       TCGA-44-6775       TCGA-44-6776       TCGA-44-6777 
"CCDC73 WILD-TYPE" "CCDC73 WILD-TYPE" "CCDC73 WILD-TYPE" "CCDC73 WILD-TYPE" 
      TCGA-44-6778       TCGA-44-6779       TCGA-49-4486       TCGA-49-4487 
"CCDC73 WILD-TYPE" "CCDC73 WILD-TYPE" "CCDC73 WILD-TYPE" "CCDC73 WILD-TYPE" 
      TCGA-49-4488       TCGA-49-4490       TCGA-49-4494       TCGA-49-4501 
  "CCDC73 MUTATED" "CCDC73 WILD-TYPE" "CCDC73 WILD-TYPE" "CCDC73 WILD-TYPE" 
      TCGA-49-4505       TCGA-49-4506       TCGA-49-4507       TCGA-49-4510 
"CCDC73 WILD-TYPE" "CCDC73 WILD-TYPE" "CCDC73 WILD-TYPE" "CCDC73 WILD-TYPE" 
      TCGA-49-4512       TCGA-49-4514       TCGA-49-6742       TCGA-49-6743 
"CCDC73 WILD-TYPE" "CCDC73 WILD-TYPE" "CCDC73 WILD-TYPE" "CCDC73 WILD-TYPE" 
      TCGA-49-6744       TCGA-49-6745       TCGA-50-5044       TCGA-50-5045 
"CCDC73 WILD-TYPE" "CCDC73 WILD-TYPE" "CCDC73 WILD-TYPE" "CCDC73 WILD-TYPE" 
      TCGA-50-5049       TCGA-50-5051       TCGA-50-5055       TCGA-50-5066 
  "CCDC73 MUTATED"   "CCDC73 MUTATED" "CCDC73 WILD-TYPE" "CCDC73 WILD-TYPE" 
      TCGA-50-5068       TCGA-50-5072       TCGA-50-5930       TCGA-50-5931 
"CCDC73 WILD-TYPE" "CCDC73 WILD-TYPE" "CCDC73 WILD-TYPE" "CCDC73 WILD-TYPE" 
      TCGA-50-5932       TCGA-50-5933       TCGA-50-5935       TCGA-50-5936 
"CCDC73 WILD-TYPE" "CCDC73 WILD-TYPE" "CCDC73 WILD-TYPE" "CCDC73 WILD-TYPE" 
      TCGA-50-5939       TCGA-50-5941       TCGA-50-5942       TCGA-50-5944 
"CCDC73 WILD-TYPE" "CCDC73 WILD-TYPE" "CCDC73 WILD-TYPE" "CCDC73 WILD-TYPE" 
      TCGA-50-5946       TCGA-50-6590       TCGA-50-6591       TCGA-50-6592 
"CCDC73 WILD-TYPE" "CCDC73 WILD-TYPE" "CCDC73 WILD-TYPE" "CCDC73 WILD-TYPE" 
      TCGA-50-6593       TCGA-50-6594       TCGA-50-6595       TCGA-50-6597 
"CCDC73 WILD-TYPE"   "CCDC73 MUTATED" "CCDC73 WILD-TYPE" "CCDC73 WILD-TYPE" 
      TCGA-55-1592       TCGA-55-1594       TCGA-55-1595       TCGA-55-1596 
"CCDC73 WILD-TYPE" "CCDC73 WILD-TYPE"   "CCDC73 MUTATED" "CCDC73 WILD-TYPE" 
      TCGA-55-5899       TCGA-55-6543       TCGA-55-6642       TCGA-55-6712 
  "CCDC73 MUTATED" "CCDC73 WILD-TYPE" "CCDC73 WILD-TYPE" "CCDC73 WILD-TYPE" 
      TCGA-64-1676       TCGA-64-1677       TCGA-64-1678       TCGA-64-1680 
"CCDC73 WILD-TYPE" "CCDC73 WILD-TYPE" "CCDC73 WILD-TYPE" "CCDC73 WILD-TYPE" 
      TCGA-64-5774       TCGA-64-5775       TCGA-64-5778       TCGA-64-5779 
"CCDC73 WILD-TYPE" "CCDC73 WILD-TYPE" "CCDC73 WILD-TYPE" "CCDC73 WILD-TYPE" 
      TCGA-64-5781       TCGA-64-5815       TCGA-67-3770       TCGA-67-3771 
"CCDC73 WILD-TYPE" "CCDC73 WILD-TYPE" "CCDC73 WILD-TYPE" "CCDC73 WILD-TYPE" 
      TCGA-67-3772       TCGA-67-3773       TCGA-67-3774       TCGA-67-6215 
"CCDC73 WILD-TYPE" "CCDC73 WILD-TYPE" "CCDC73 WILD-TYPE" "CCDC73 WILD-TYPE" 
      TCGA-67-6216       TCGA-67-6217       TCGA-71-6725       TCGA-73-4658 
"CCDC73 WILD-TYPE" "CCDC73 WILD-TYPE" "CCDC73 WILD-TYPE" "CCDC73 WILD-TYPE" 
      TCGA-73-4659       TCGA-73-4662       TCGA-73-4666       TCGA-73-4668 
"CCDC73 WILD-TYPE" "CCDC73 WILD-TYPE" "CCDC73 WILD-TYPE" "CCDC73 WILD-TYPE" 
      TCGA-73-4670       TCGA-73-4675       TCGA-73-4676       TCGA-73-4677 
"CCDC73 WILD-TYPE" "CCDC73 WILD-TYPE" "CCDC73 WILD-TYPE" "CCDC73 WILD-TYPE" 
      TCGA-91-6828       TCGA-91-6829       TCGA-91-6831       TCGA-91-6835 
"CCDC73 WILD-TYPE"   "CCDC73 MUTATED" "CCDC73 WILD-TYPE" "CCDC73 WILD-TYPE" 
      TCGA-91-6836 
"CCDC73 WILD-TYPE" 
      TCGA-05-4249       TCGA-05-4250       TCGA-05-4382       TCGA-05-4384 
"CCDC73 WILD-TYPE" "CCDC73 WILD-TYPE" "CCDC73 WILD-TYPE" "CCDC73 WILD-TYPE" 
      TCGA-05-4390       TCGA-05-4396       TCGA-05-4397       TCGA-05-4398 
"CCDC73 WILD-TYPE" "CCDC73 WILD-TYPE" "CCDC73 WILD-TYPE" "CCDC73 WILD-TYPE" 
      TCGA-05-4402       TCGA-05-4405       TCGA-05-4415       TCGA-05-4417 
"CCDC73 WILD-TYPE" "CCDC73 WILD-TYPE" "CCDC73 WILD-TYPE" "CCDC73 WILD-TYPE" 
      TCGA-05-4418       TCGA-05-4420       TCGA-05-4424       TCGA-05-4426 
"CCDC73 WILD-TYPE" "CCDC73 WILD-TYPE" "CCDC73 WILD-TYPE" "CCDC73 WILD-TYPE" 
      TCGA-05-4427       TCGA-05-4430       TCGA-05-4432       TCGA-05-4433 
"CCDC73 WILD-TYPE" "CCDC73 WILD-TYPE" "CCDC73 WILD-TYPE" "CCDC73 WILD-TYPE" 
      TCGA-05-4434       TCGA-05-5420       TCGA-05-5423       TCGA-05-5425 
"CCDC73 WILD-TYPE" "CCDC73 WILD-TYPE"   "CCDC73 MUTATED" "CCDC73 WILD-TYPE" 
      TCGA-05-5429       TCGA-05-5715       TCGA-35-3615       TCGA-35-4122 
"CCDC73 WILD-TYPE" "CCDC73 WILD-TYPE" "CCDC73 WILD-TYPE" "CCDC73 WILD-TYPE" 
      TCGA-35-4123       TCGA-35-5375       TCGA-38-4625       TCGA-38-4626 
"CCDC73 WILD-TYPE" "CCDC73 WILD-TYPE"   "CCDC73 MUTATED" "CCDC73 WILD-TYPE" 
      TCGA-38-4627       TCGA-38-4628       TCGA-38-4629       TCGA-38-4630 
"CCDC73 WILD-TYPE" "CCDC73 WILD-TYPE" "CCDC73 WILD-TYPE" "CCDC73 WILD-TYPE" 
      TCGA-38-4631       TCGA-38-4632       TCGA-38-6178       TCGA-44-2655 
"CCDC73 WILD-TYPE" "CCDC73 WILD-TYPE" "CCDC73 WILD-TYPE" "CCDC73 WILD-TYPE" 
      TCGA-44-2656       TCGA-44-2657       TCGA-44-2659       TCGA-44-2661 
"CCDC73 WILD-TYPE" "CCDC73 WILD-TYPE" "CCDC73 WILD-TYPE" "CCDC73 WILD-TYPE" 
      TCGA-44-2662       TCGA-44-2665       TCGA-44-2666       TCGA-44-2668 
"CCDC73 WILD-TYPE" "CCDC73 WILD-TYPE" "CCDC73 WILD-TYPE" "CCDC73 WILD-TYPE" 
      TCGA-44-3396       TCGA-44-3398       TCGA-44-3918       TCGA-44-3919 
"CCDC73 WILD-TYPE" "CCDC73 WILD-TYPE" "CCDC73 WILD-TYPE" "CCDC73 WILD-TYPE" 
      TCGA-44-4112       TCGA-44-5643       TCGA-44-5645       TCGA-44-6144 
"CCDC73 WILD-TYPE" "CCDC73 WILD-TYPE" "CCDC73 WILD-TYPE" "CCDC73 WILD-TYPE" 
      TCGA-44-6145       TCGA-44-6146       TCGA-44-6147       TCGA-44-6148 
"CCDC73 WILD-TYPE" "CCDC73 WILD-TYPE"   "CCDC73 MUTATED" "CCDC73 WILD-TYPE" 
      TCGA-44-6774       TCGA-44-6775       TCGA-44-6776       TCGA-44-6777 
"CCDC73 WILD-TYPE" "CCDC73 WILD-TYPE" "CCDC73 WILD-TYPE" "CCDC73 WILD-TYPE" 
      TCGA-44-6778       TCGA-44-6779       TCGA-49-4486       TCGA-49-4487 
"CCDC73 WILD-TYPE" "CCDC73 WILD-TYPE" "CCDC73 WILD-TYPE" "CCDC73 WILD-TYPE" 
      TCGA-49-4488       TCGA-49-4490       TCGA-49-4494       TCGA-49-4501 
  "CCDC73 MUTATED" "CCDC73 WILD-TYPE" "CCDC73 WILD-TYPE" "CCDC73 WILD-TYPE" 
      TCGA-49-4505       TCGA-49-4506       TCGA-49-4507       TCGA-49-4510 
"CCDC73 WILD-TYPE" "CCDC73 WILD-TYPE" "CCDC73 WILD-TYPE" "CCDC73 WILD-TYPE" 
      TCGA-49-4512       TCGA-49-4514       TCGA-49-6742       TCGA-49-6743 
"CCDC73 WILD-TYPE" "CCDC73 WILD-TYPE" "CCDC73 WILD-TYPE" "CCDC73 WILD-TYPE" 
      TCGA-49-6744       TCGA-49-6745       TCGA-50-5044       TCGA-50-5045 
"CCDC73 WILD-TYPE" "CCDC73 WILD-TYPE" "CCDC73 WILD-TYPE" "CCDC73 WILD-TYPE" 
      TCGA-50-5049       TCGA-50-5051       TCGA-50-5055       TCGA-50-5066 
  "CCDC73 MUTATED"   "CCDC73 MUTATED" "CCDC73 WILD-TYPE" "CCDC73 WILD-TYPE" 
      TCGA-50-5068       TCGA-50-5072       TCGA-50-5930       TCGA-50-5931 
"CCDC73 WILD-TYPE" "CCDC73 WILD-TYPE" "CCDC73 WILD-TYPE" "CCDC73 WILD-TYPE" 
      TCGA-50-5932       TCGA-50-5933       TCGA-50-5935       TCGA-50-5936 
"CCDC73 WILD-TYPE" "CCDC73 WILD-TYPE" "CCDC73 WILD-TYPE" "CCDC73 WILD-TYPE" 
      TCGA-50-5939       TCGA-50-5941       TCGA-50-5942       TCGA-50-5944 
"CCDC73 WILD-TYPE" "CCDC73 WILD-TYPE" "CCDC73 WILD-TYPE" "CCDC73 WILD-TYPE" 
      TCGA-50-5946       TCGA-50-6590       TCGA-50-6591       TCGA-50-6592 
"CCDC73 WILD-TYPE" "CCDC73 WILD-TYPE" "CCDC73 WILD-TYPE" "CCDC73 WILD-TYPE" 
      TCGA-50-6593       TCGA-50-6594       TCGA-50-6595       TCGA-50-6597 
"CCDC73 WILD-TYPE"   "CCDC73 MUTATED" "CCDC73 WILD-TYPE" "CCDC73 WILD-TYPE" 
      TCGA-55-1592       TCGA-55-1594       TCGA-55-1595       TCGA-55-1596 
"CCDC73 WILD-TYPE" "CCDC73 WILD-TYPE"   "CCDC73 MUTATED" "CCDC73 WILD-TYPE" 
      TCGA-55-5899       TCGA-55-6543       TCGA-55-6642       TCGA-55-6712 
  "CCDC73 MUTATED" "CCDC73 WILD-TYPE" "CCDC73 WILD-TYPE" "CCDC73 WILD-TYPE" 
      TCGA-64-1676       TCGA-64-1677       TCGA-64-1678       TCGA-64-1680 
"CCDC73 WILD-TYPE" "CCDC73 WILD-TYPE" "CCDC73 WILD-TYPE" "CCDC73 WILD-TYPE" 
      TCGA-64-5774       TCGA-64-5775       TCGA-64-5778       TCGA-64-5779 
"CCDC73 WILD-TYPE" "CCDC73 WILD-TYPE" "CCDC73 WILD-TYPE" "CCDC73 WILD-TYPE" 
      TCGA-64-5781       TCGA-64-5815       TCGA-67-3770       TCGA-67-3771 
"CCDC73 WILD-TYPE" "CCDC73 WILD-TYPE" "CCDC73 WILD-TYPE" "CCDC73 WILD-TYPE" 
      TCGA-67-3772       TCGA-67-3773       TCGA-67-3774       TCGA-67-6215 
"CCDC73 WILD-TYPE" "CCDC73 WILD-TYPE" "CCDC73 WILD-TYPE" "CCDC73 WILD-TYPE" 
      TCGA-67-6216       TCGA-67-6217       TCGA-71-6725       TCGA-73-4658 
"CCDC73 WILD-TYPE" "CCDC73 WILD-TYPE" "CCDC73 WILD-TYPE" "CCDC73 WILD-TYPE" 
      TCGA-73-4659       TCGA-73-4662       TCGA-73-4666       TCGA-73-4668 
"CCDC73 WILD-TYPE" "CCDC73 WILD-TYPE" "CCDC73 WILD-TYPE" "CCDC73 WILD-TYPE" 
      TCGA-73-4670       TCGA-73-4675       TCGA-73-4676       TCGA-73-4677 
"CCDC73 WILD-TYPE" "CCDC73 WILD-TYPE" "CCDC73 WILD-TYPE" "CCDC73 WILD-TYPE" 
      TCGA-91-6828       TCGA-91-6829       TCGA-91-6831       TCGA-91-6835 
"CCDC73 WILD-TYPE"   "CCDC73 MUTATED" "CCDC73 WILD-TYPE" "CCDC73 WILD-TYPE" 
      TCGA-91-6836 
"CCDC73 WILD-TYPE" 
[1] "hr=" "1.5"
D176V2, continuous
D176V3, binary
[1] "tbl2"
                  cls
clus               [,1] [,2]
  CCDC73 MUTATED      7    4
  CCDC73 WILD-TYPE   86   75
        clus
vv       CCDC73 MUTATED CCDC73 WILD-TYPE
  FEMALE              7               86
  MALE                4               75
D176V4, continuous
D176V5, multiclass
D176V6, multiclass
    clus
vv   CCDC73 MUTATED CCDC73 WILD-TYPE
  T1              4               37
  T2              5              103
  T3              2               12
  T4              0                8
D176V7, multiclass
       clus
vv      CCDC73 MUTATED CCDC73 WILD-TYPE
  N0                 5               90
  N1                 2               35
  N2+N3              3               32
D176V8, multiclass
    clus
vv   CCDC73 MUTATED CCDC73 WILD-TYPE
  M0              9              128
  M1              0                9
  MX              2               20
D176V9, multiclass
     clus
vv    CCDC73 MUTATED CCDC73 WILD-TYPE
  I                7               81
  II               1               32
  III              3               36
  IV               0                9
D176V10, binary
[1] "tbl2"
                  cls
clus               [,1] [,2]
  CCDC73 MUTATED      2    9
  CCDC73 WILD-TYPE   14  147
     clus
vv    CCDC73 MUTATED CCDC73 WILD-TYPE
  NO               2               14
  YES              9              147
D176V11, continuous
D176V12, continuous
D176V13, multiclass
                                             clus
vv                                            CCDC73 MUTATED CCDC73 WILD-TYPE
  CURRENT REFORMED SMOKER FOR < OR = 15 YEARS              5               57
  CURRENT REFORMED SMOKER FOR > 15 YEARS                   3               43
  CURRENT SMOKER                                           2               26
  LIFELONG NON-SMOKER                                      0               24
D176V14, continuous

Clustering(177) Variable = OR4M1 MUTATION ANALYSIS
D177V1, survival
                 sevent
clus2              0  1
  OR4M1 MUTATED    5  3
  OR4M1 WILD-TYPE 94 47
  OR4M1 MUTATED OR4M1 WILD-TYPE 
              8             141 
  OR4M1 MUTATED OR4M1 WILD-TYPE 
              3              47 
$`OR4M1 MUTATED`
TCGA-05-4396 TCGA-05-4427 TCGA-38-4629 TCGA-44-6774 TCGA-49-6743 TCGA-50-5045 
        9.96        26.01        28.37         5.42        12.13        71.47 
TCGA-50-5051 TCGA-55-5899 
       14.96         2.86 

$`OR4M1 WILD-TYPE`
TCGA-05-4249 TCGA-05-4250 TCGA-05-4382 TCGA-05-4384 TCGA-05-4390 TCGA-05-4397 
       38.07         3.98        19.92        14.01        37.02        24.03 
TCGA-05-4398 TCGA-05-4402 TCGA-05-4405 TCGA-05-4415 TCGA-05-4417 TCGA-05-4418 
       47.05         8.02        20.05         2.96        14.93         8.98 
TCGA-05-4420 TCGA-05-4424 TCGA-05-4426 TCGA-05-4430 TCGA-05-4432 TCGA-05-4433 
       29.95        30.02        26.01        25.02        25.02        24.00 
TCGA-05-4434 TCGA-05-5420 TCGA-05-5423 TCGA-05-5425 TCGA-05-5429 TCGA-05-5715 
       15.02         1.02         4.96         2.96         0.99         2.04 
TCGA-35-3615 TCGA-35-4122 TCGA-35-4123 TCGA-35-5375 TCGA-38-4625 TCGA-38-4626 
        0.46         7.36         5.95         8.68        47.61        85.32 
TCGA-38-4627 TCGA-38-4628 TCGA-38-4630 TCGA-38-4631 TCGA-38-4632 TCGA-38-6178 
       37.71        49.02        35.28        11.64        44.61         5.19 
TCGA-44-2655 TCGA-44-2656 TCGA-44-2657 TCGA-44-2659 TCGA-44-2661 TCGA-44-2662 
       18.87        19.10        13.15        17.39         3.39        15.78 
TCGA-44-2665 TCGA-44-2666 TCGA-44-2668 TCGA-44-3396 TCGA-44-3398 TCGA-44-3918 
       13.15         3.19         8.09        10.22         8.32         6.44 
TCGA-44-3919 TCGA-44-4112 TCGA-44-5643 TCGA-44-5645 TCGA-44-6144 TCGA-44-6145 
        6.21         4.60         3.48         6.84         0.30         3.35 
TCGA-44-6146 TCGA-44-6147 TCGA-44-6148 TCGA-44-6775 TCGA-44-6776 TCGA-44-6777 
        9.93         7.76         3.12         2.70        63.72        32.45 
TCGA-44-6778 TCGA-44-6779 TCGA-49-4486 TCGA-49-4487 TCGA-49-4488 TCGA-49-4490 
       36.49        16.41        76.21        28.11        28.57        12.66 
TCGA-49-4494 TCGA-49-4501 TCGA-49-4505 TCGA-49-4506 TCGA-49-4507 TCGA-49-4510 
       35.54        46.72        14.07        32.84         8.81        29.46 
TCGA-49-4512 TCGA-49-4514 TCGA-49-6742 TCGA-49-6744 TCGA-49-6745 TCGA-50-5044 
       29.75        43.20        15.02        12.99         4.93        20.48 
TCGA-50-5049 TCGA-50-5055 TCGA-50-5066 TCGA-50-5068 TCGA-50-5072 TCGA-50-5930 
       48.82        25.81         9.76        49.28         8.05         9.27 
TCGA-50-5931 TCGA-50-5932 TCGA-50-5933 TCGA-50-5935 TCGA-50-5936 TCGA-50-5939 
        8.78        35.87        77.88        21.47         8.45        15.12 
TCGA-50-5941 TCGA-50-5942 TCGA-50-5944 TCGA-50-5946 TCGA-50-6590 TCGA-50-6591 
        9.37         4.44        12.26        11.47        42.31         3.88 
TCGA-50-6592 TCGA-50-6593 TCGA-50-6594 TCGA-50-6595 TCGA-50-6597 TCGA-55-1592 
       25.51        11.05        12.16         6.21        33.37        23.05 
TCGA-55-1594 TCGA-55-1595 TCGA-55-1596 TCGA-55-6543 TCGA-55-6642 TCGA-55-6712 
       38.73        48.62        45.17         0.07        32.61         0.79 
TCGA-64-1676 TCGA-64-1677 TCGA-64-1678 TCGA-64-1680 TCGA-64-5774 TCGA-64-5775 
       56.81        20.65        39.09        37.02        83.84         0.10 
TCGA-64-5778 TCGA-64-5779 TCGA-64-5781 TCGA-64-5815 TCGA-67-3770 TCGA-67-3771 
       30.44        16.67        39.52         7.33         0.99         1.97 
TCGA-67-3772 TCGA-67-3773 TCGA-67-3774 TCGA-67-6215 TCGA-67-6216 TCGA-67-6217 
        0.59         2.04         0.59         0.89         0.69        13.87 
TCGA-71-6725 TCGA-73-4658 TCGA-73-4659 TCGA-73-4662 TCGA-73-4666 TCGA-73-4668 
        2.01        52.57        23.38        29.95        20.28        15.35 
TCGA-73-4670 TCGA-73-4675 TCGA-73-4676 TCGA-73-4677 TCGA-91-6828 TCGA-91-6829 
        0.46         1.32         4.01         1.25         1.22        41.33 
TCGA-91-6831 TCGA-91-6835 TCGA-91-6836 
        1.28         1.15         0.36 

  OR4M1 MUTATED OR4M1 WILD-TYPE 
           2.86            0.07 
  OR4M1 MUTATED OR4M1 WILD-TYPE 
          71.47           85.32 
  OR4M1 MUTATED OR4M1 WILD-TYPE 
         13.545          13.870 
[1] "2.9 - 71.5 (13.5)" "0.1 - 85.3 (13.9)"
     TCGA-05-4249      TCGA-05-4250      TCGA-05-4382      TCGA-05-4384 
"OR4M1 WILD-TYPE" "OR4M1 WILD-TYPE" "OR4M1 WILD-TYPE" "OR4M1 WILD-TYPE" 
     TCGA-05-4390      TCGA-05-4396      TCGA-05-4397      TCGA-05-4398 
"OR4M1 WILD-TYPE"   "OR4M1 MUTATED" "OR4M1 WILD-TYPE" "OR4M1 WILD-TYPE" 
     TCGA-05-4402      TCGA-05-4405      TCGA-05-4415      TCGA-05-4417 
"OR4M1 WILD-TYPE" "OR4M1 WILD-TYPE" "OR4M1 WILD-TYPE" "OR4M1 WILD-TYPE" 
     TCGA-05-4418      TCGA-05-4420      TCGA-05-4424      TCGA-05-4426 
"OR4M1 WILD-TYPE" "OR4M1 WILD-TYPE" "OR4M1 WILD-TYPE" "OR4M1 WILD-TYPE" 
     TCGA-05-4427      TCGA-05-4430      TCGA-05-4432      TCGA-05-4433 
  "OR4M1 MUTATED" "OR4M1 WILD-TYPE" "OR4M1 WILD-TYPE" "OR4M1 WILD-TYPE" 
     TCGA-05-4434      TCGA-05-5420      TCGA-05-5423      TCGA-05-5425 
"OR4M1 WILD-TYPE" "OR4M1 WILD-TYPE" "OR4M1 WILD-TYPE" "OR4M1 WILD-TYPE" 
     TCGA-05-5429      TCGA-05-5715      TCGA-35-3615      TCGA-35-4122 
"OR4M1 WILD-TYPE" "OR4M1 WILD-TYPE" "OR4M1 WILD-TYPE" "OR4M1 WILD-TYPE" 
     TCGA-35-4123      TCGA-35-5375      TCGA-38-4625      TCGA-38-4626 
"OR4M1 WILD-TYPE" "OR4M1 WILD-TYPE" "OR4M1 WILD-TYPE" "OR4M1 WILD-TYPE" 
     TCGA-38-4627      TCGA-38-4628      TCGA-38-4629      TCGA-38-4630 
"OR4M1 WILD-TYPE" "OR4M1 WILD-TYPE"   "OR4M1 MUTATED" "OR4M1 WILD-TYPE" 
     TCGA-38-4631      TCGA-38-4632      TCGA-38-6178      TCGA-44-2655 
"OR4M1 WILD-TYPE" "OR4M1 WILD-TYPE" "OR4M1 WILD-TYPE" "OR4M1 WILD-TYPE" 
     TCGA-44-2656      TCGA-44-2657      TCGA-44-2659      TCGA-44-2661 
"OR4M1 WILD-TYPE" "OR4M1 WILD-TYPE" "OR4M1 WILD-TYPE" "OR4M1 WILD-TYPE" 
     TCGA-44-2662      TCGA-44-2665      TCGA-44-2666      TCGA-44-2668 
"OR4M1 WILD-TYPE" "OR4M1 WILD-TYPE" "OR4M1 WILD-TYPE" "OR4M1 WILD-TYPE" 
     TCGA-44-3396      TCGA-44-3398      TCGA-44-3918      TCGA-44-3919 
"OR4M1 WILD-TYPE" "OR4M1 WILD-TYPE" "OR4M1 WILD-TYPE" "OR4M1 WILD-TYPE" 
     TCGA-44-4112      TCGA-44-5643      TCGA-44-5645      TCGA-44-6144 
"OR4M1 WILD-TYPE" "OR4M1 WILD-TYPE" "OR4M1 WILD-TYPE" "OR4M1 WILD-TYPE" 
     TCGA-44-6145      TCGA-44-6146      TCGA-44-6147      TCGA-44-6148 
"OR4M1 WILD-TYPE" "OR4M1 WILD-TYPE" "OR4M1 WILD-TYPE" "OR4M1 WILD-TYPE" 
     TCGA-44-6774      TCGA-44-6775      TCGA-44-6776      TCGA-44-6777 
  "OR4M1 MUTATED" "OR4M1 WILD-TYPE" "OR4M1 WILD-TYPE" "OR4M1 WILD-TYPE" 
     TCGA-44-6778      TCGA-44-6779      TCGA-49-4486      TCGA-49-4487 
"OR4M1 WILD-TYPE" "OR4M1 WILD-TYPE" "OR4M1 WILD-TYPE" "OR4M1 WILD-TYPE" 
     TCGA-49-4488      TCGA-49-4490      TCGA-49-4494      TCGA-49-4501 
"OR4M1 WILD-TYPE" "OR4M1 WILD-TYPE" "OR4M1 WILD-TYPE" "OR4M1 WILD-TYPE" 
     TCGA-49-4505      TCGA-49-4506      TCGA-49-4507      TCGA-49-4510 
"OR4M1 WILD-TYPE" "OR4M1 WILD-TYPE" "OR4M1 WILD-TYPE" "OR4M1 WILD-TYPE" 
     TCGA-49-4512      TCGA-49-4514      TCGA-49-6742      TCGA-49-6743 
"OR4M1 WILD-TYPE" "OR4M1 WILD-TYPE" "OR4M1 WILD-TYPE"   "OR4M1 MUTATED" 
     TCGA-49-6744      TCGA-49-6745      TCGA-50-5044      TCGA-50-5045 
"OR4M1 WILD-TYPE" "OR4M1 WILD-TYPE" "OR4M1 WILD-TYPE"   "OR4M1 MUTATED" 
     TCGA-50-5049      TCGA-50-5051      TCGA-50-5055      TCGA-50-5066 
"OR4M1 WILD-TYPE"   "OR4M1 MUTATED" "OR4M1 WILD-TYPE" "OR4M1 WILD-TYPE" 
     TCGA-50-5068      TCGA-50-5072      TCGA-50-5930      TCGA-50-5931 
"OR4M1 WILD-TYPE" "OR4M1 WILD-TYPE" "OR4M1 WILD-TYPE" "OR4M1 WILD-TYPE" 
     TCGA-50-5932      TCGA-50-5933      TCGA-50-5935      TCGA-50-5936 
"OR4M1 WILD-TYPE" "OR4M1 WILD-TYPE" "OR4M1 WILD-TYPE" "OR4M1 WILD-TYPE" 
     TCGA-50-5939      TCGA-50-5941      TCGA-50-5942      TCGA-50-5944 
"OR4M1 WILD-TYPE" "OR4M1 WILD-TYPE" "OR4M1 WILD-TYPE" "OR4M1 WILD-TYPE" 
     TCGA-50-5946      TCGA-50-6590      TCGA-50-6591      TCGA-50-6592 
"OR4M1 WILD-TYPE" "OR4M1 WILD-TYPE" "OR4M1 WILD-TYPE" "OR4M1 WILD-TYPE" 
     TCGA-50-6593      TCGA-50-6594      TCGA-50-6595      TCGA-50-6597 
"OR4M1 WILD-TYPE" "OR4M1 WILD-TYPE" "OR4M1 WILD-TYPE" "OR4M1 WILD-TYPE" 
     TCGA-55-1592      TCGA-55-1594      TCGA-55-1595      TCGA-55-1596 
"OR4M1 WILD-TYPE" "OR4M1 WILD-TYPE" "OR4M1 WILD-TYPE" "OR4M1 WILD-TYPE" 
     TCGA-55-5899      TCGA-55-6543      TCGA-55-6642      TCGA-55-6712 
  "OR4M1 MUTATED" "OR4M1 WILD-TYPE" "OR4M1 WILD-TYPE" "OR4M1 WILD-TYPE" 
     TCGA-64-1676      TCGA-64-1677      TCGA-64-1678      TCGA-64-1680 
"OR4M1 WILD-TYPE" "OR4M1 WILD-TYPE" "OR4M1 WILD-TYPE" "OR4M1 WILD-TYPE" 
     TCGA-64-5774      TCGA-64-5775      TCGA-64-5778      TCGA-64-5779 
"OR4M1 WILD-TYPE" "OR4M1 WILD-TYPE" "OR4M1 WILD-TYPE" "OR4M1 WILD-TYPE" 
     TCGA-64-5781      TCGA-64-5815      TCGA-67-3770      TCGA-67-3771 
"OR4M1 WILD-TYPE" "OR4M1 WILD-TYPE" "OR4M1 WILD-TYPE" "OR4M1 WILD-TYPE" 
     TCGA-67-3772      TCGA-67-3773      TCGA-67-3774      TCGA-67-6215 
"OR4M1 WILD-TYPE" "OR4M1 WILD-TYPE" "OR4M1 WILD-TYPE" "OR4M1 WILD-TYPE" 
     TCGA-67-6216      TCGA-67-6217      TCGA-71-6725      TCGA-73-4658 
"OR4M1 WILD-TYPE" "OR4M1 WILD-TYPE" "OR4M1 WILD-TYPE" "OR4M1 WILD-TYPE" 
     TCGA-73-4659      TCGA-73-4662      TCGA-73-4666      TCGA-73-4668 
"OR4M1 WILD-TYPE" "OR4M1 WILD-TYPE" "OR4M1 WILD-TYPE" "OR4M1 WILD-TYPE" 
     TCGA-73-4670      TCGA-73-4675      TCGA-73-4676      TCGA-73-4677 
"OR4M1 WILD-TYPE" "OR4M1 WILD-TYPE" "OR4M1 WILD-TYPE" "OR4M1 WILD-TYPE" 
     TCGA-91-6828      TCGA-91-6829      TCGA-91-6831      TCGA-91-6835 
"OR4M1 WILD-TYPE" "OR4M1 WILD-TYPE" "OR4M1 WILD-TYPE" "OR4M1 WILD-TYPE" 
     TCGA-91-6836 
"OR4M1 WILD-TYPE" 
     TCGA-05-4249      TCGA-05-4250      TCGA-05-4382      TCGA-05-4384 
"OR4M1 WILD-TYPE" "OR4M1 WILD-TYPE" "OR4M1 WILD-TYPE" "OR4M1 WILD-TYPE" 
     TCGA-05-4390      TCGA-05-4396      TCGA-05-4397      TCGA-05-4398 
"OR4M1 WILD-TYPE"   "OR4M1 MUTATED" "OR4M1 WILD-TYPE" "OR4M1 WILD-TYPE" 
     TCGA-05-4402      TCGA-05-4405      TCGA-05-4415      TCGA-05-4417 
"OR4M1 WILD-TYPE" "OR4M1 WILD-TYPE" "OR4M1 WILD-TYPE" "OR4M1 WILD-TYPE" 
     TCGA-05-4418      TCGA-05-4420      TCGA-05-4424      TCGA-05-4426 
"OR4M1 WILD-TYPE" "OR4M1 WILD-TYPE" "OR4M1 WILD-TYPE" "OR4M1 WILD-TYPE" 
     TCGA-05-4427      TCGA-05-4430      TCGA-05-4432      TCGA-05-4433 
  "OR4M1 MUTATED" "OR4M1 WILD-TYPE" "OR4M1 WILD-TYPE" "OR4M1 WILD-TYPE" 
     TCGA-05-4434      TCGA-05-5420      TCGA-05-5423      TCGA-05-5425 
"OR4M1 WILD-TYPE" "OR4M1 WILD-TYPE" "OR4M1 WILD-TYPE" "OR4M1 WILD-TYPE" 
     TCGA-05-5429      TCGA-05-5715      TCGA-35-3615      TCGA-35-4122 
"OR4M1 WILD-TYPE" "OR4M1 WILD-TYPE" "OR4M1 WILD-TYPE" "OR4M1 WILD-TYPE" 
     TCGA-35-4123      TCGA-35-5375      TCGA-38-4625      TCGA-38-4626 
"OR4M1 WILD-TYPE" "OR4M1 WILD-TYPE" "OR4M1 WILD-TYPE" "OR4M1 WILD-TYPE" 
     TCGA-38-4627      TCGA-38-4628      TCGA-38-4629      TCGA-38-4630 
"OR4M1 WILD-TYPE" "OR4M1 WILD-TYPE"   "OR4M1 MUTATED" "OR4M1 WILD-TYPE" 
     TCGA-38-4631      TCGA-38-4632      TCGA-38-6178      TCGA-44-2655 
"OR4M1 WILD-TYPE" "OR4M1 WILD-TYPE" "OR4M1 WILD-TYPE" "OR4M1 WILD-TYPE" 
     TCGA-44-2656      TCGA-44-2657      TCGA-44-2659      TCGA-44-2661 
"OR4M1 WILD-TYPE" "OR4M1 WILD-TYPE" "OR4M1 WILD-TYPE" "OR4M1 WILD-TYPE" 
     TCGA-44-2662      TCGA-44-2665      TCGA-44-2666      TCGA-44-2668 
"OR4M1 WILD-TYPE" "OR4M1 WILD-TYPE" "OR4M1 WILD-TYPE" "OR4M1 WILD-TYPE" 
     TCGA-44-3396      TCGA-44-3398      TCGA-44-3918      TCGA-44-3919 
"OR4M1 WILD-TYPE" "OR4M1 WILD-TYPE" "OR4M1 WILD-TYPE" "OR4M1 WILD-TYPE" 
     TCGA-44-4112      TCGA-44-5643      TCGA-44-5645      TCGA-44-6144 
"OR4M1 WILD-TYPE" "OR4M1 WILD-TYPE" "OR4M1 WILD-TYPE" "OR4M1 WILD-TYPE" 
     TCGA-44-6145      TCGA-44-6146      TCGA-44-6147      TCGA-44-6148 
"OR4M1 WILD-TYPE" "OR4M1 WILD-TYPE" "OR4M1 WILD-TYPE" "OR4M1 WILD-TYPE" 
     TCGA-44-6774      TCGA-44-6775      TCGA-44-6776      TCGA-44-6777 
  "OR4M1 MUTATED" "OR4M1 WILD-TYPE" "OR4M1 WILD-TYPE" "OR4M1 WILD-TYPE" 
     TCGA-44-6778      TCGA-44-6779      TCGA-49-4486      TCGA-49-4487 
"OR4M1 WILD-TYPE" "OR4M1 WILD-TYPE" "OR4M1 WILD-TYPE" "OR4M1 WILD-TYPE" 
     TCGA-49-4488      TCGA-49-4490      TCGA-49-4494      TCGA-49-4501 
"OR4M1 WILD-TYPE" "OR4M1 WILD-TYPE" "OR4M1 WILD-TYPE" "OR4M1 WILD-TYPE" 
     TCGA-49-4505      TCGA-49-4506      TCGA-49-4507      TCGA-49-4510 
"OR4M1 WILD-TYPE" "OR4M1 WILD-TYPE" "OR4M1 WILD-TYPE" "OR4M1 WILD-TYPE" 
     TCGA-49-4512      TCGA-49-4514      TCGA-49-6742      TCGA-49-6743 
"OR4M1 WILD-TYPE" "OR4M1 WILD-TYPE" "OR4M1 WILD-TYPE"   "OR4M1 MUTATED" 
     TCGA-49-6744      TCGA-49-6745      TCGA-50-5044      TCGA-50-5045 
"OR4M1 WILD-TYPE" "OR4M1 WILD-TYPE" "OR4M1 WILD-TYPE"   "OR4M1 MUTATED" 
     TCGA-50-5049      TCGA-50-5051      TCGA-50-5055      TCGA-50-5066 
"OR4M1 WILD-TYPE"   "OR4M1 MUTATED" "OR4M1 WILD-TYPE" "OR4M1 WILD-TYPE" 
     TCGA-50-5068      TCGA-50-5072      TCGA-50-5930      TCGA-50-5931 
"OR4M1 WILD-TYPE" "OR4M1 WILD-TYPE" "OR4M1 WILD-TYPE" "OR4M1 WILD-TYPE" 
     TCGA-50-5932      TCGA-50-5933      TCGA-50-5935      TCGA-50-5936 
"OR4M1 WILD-TYPE" "OR4M1 WILD-TYPE" "OR4M1 WILD-TYPE" "OR4M1 WILD-TYPE" 
     TCGA-50-5939      TCGA-50-5941      TCGA-50-5942      TCGA-50-5944 
"OR4M1 WILD-TYPE" "OR4M1 WILD-TYPE" "OR4M1 WILD-TYPE" "OR4M1 WILD-TYPE" 
     TCGA-50-5946      TCGA-50-6590      TCGA-50-6591      TCGA-50-6592 
"OR4M1 WILD-TYPE" "OR4M1 WILD-TYPE" "OR4M1 WILD-TYPE" "OR4M1 WILD-TYPE" 
     TCGA-50-6593      TCGA-50-6594      TCGA-50-6595      TCGA-50-6597 
"OR4M1 WILD-TYPE" "OR4M1 WILD-TYPE" "OR4M1 WILD-TYPE" "OR4M1 WILD-TYPE" 
     TCGA-55-1592      TCGA-55-1594      TCGA-55-1595      TCGA-55-1596 
"OR4M1 WILD-TYPE" "OR4M1 WILD-TYPE" "OR4M1 WILD-TYPE" "OR4M1 WILD-TYPE" 
     TCGA-55-5899      TCGA-55-6543      TCGA-55-6642      TCGA-55-6712 
  "OR4M1 MUTATED" "OR4M1 WILD-TYPE" "OR4M1 WILD-TYPE" "OR4M1 WILD-TYPE" 
     TCGA-64-1676      TCGA-64-1677      TCGA-64-1678      TCGA-64-1680 
"OR4M1 WILD-TYPE" "OR4M1 WILD-TYPE" "OR4M1 WILD-TYPE" "OR4M1 WILD-TYPE" 
     TCGA-64-5774      TCGA-64-5775      TCGA-64-5778      TCGA-64-5779 
"OR4M1 WILD-TYPE" "OR4M1 WILD-TYPE" "OR4M1 WILD-TYPE" "OR4M1 WILD-TYPE" 
     TCGA-64-5781      TCGA-64-5815      TCGA-67-3770      TCGA-67-3771 
"OR4M1 WILD-TYPE" "OR4M1 WILD-TYPE" "OR4M1 WILD-TYPE" "OR4M1 WILD-TYPE" 
     TCGA-67-3772      TCGA-67-3773      TCGA-67-3774      TCGA-67-6215 
"OR4M1 WILD-TYPE" "OR4M1 WILD-TYPE" "OR4M1 WILD-TYPE" "OR4M1 WILD-TYPE" 
     TCGA-67-6216      TCGA-67-6217      TCGA-71-6725      TCGA-73-4658 
"OR4M1 WILD-TYPE" "OR4M1 WILD-TYPE" "OR4M1 WILD-TYPE" "OR4M1 WILD-TYPE" 
     TCGA-73-4659      TCGA-73-4662      TCGA-73-4666      TCGA-73-4668 
"OR4M1 WILD-TYPE" "OR4M1 WILD-TYPE" "OR4M1 WILD-TYPE" "OR4M1 WILD-TYPE" 
     TCGA-73-4670      TCGA-73-4675      TCGA-73-4676      TCGA-73-4677 
"OR4M1 WILD-TYPE" "OR4M1 WILD-TYPE" "OR4M1 WILD-TYPE" "OR4M1 WILD-TYPE" 
     TCGA-91-6828      TCGA-91-6829      TCGA-91-6831      TCGA-91-6835 
"OR4M1 WILD-TYPE" "OR4M1 WILD-TYPE" "OR4M1 WILD-TYPE" "OR4M1 WILD-TYPE" 
     TCGA-91-6836 
"OR4M1 WILD-TYPE" 
     TCGA-05-4249      TCGA-05-4250      TCGA-05-4382      TCGA-05-4384 
"OR4M1 WILD-TYPE" "OR4M1 WILD-TYPE" "OR4M1 WILD-TYPE" "OR4M1 WILD-TYPE" 
     TCGA-05-4390      TCGA-05-4396      TCGA-05-4397      TCGA-05-4398 
"OR4M1 WILD-TYPE"   "OR4M1 MUTATED" "OR4M1 WILD-TYPE" "OR4M1 WILD-TYPE" 
     TCGA-05-4402      TCGA-05-4405      TCGA-05-4415      TCGA-05-4417 
"OR4M1 WILD-TYPE" "OR4M1 WILD-TYPE" "OR4M1 WILD-TYPE" "OR4M1 WILD-TYPE" 
     TCGA-05-4418      TCGA-05-4420      TCGA-05-4424      TCGA-05-4426 
"OR4M1 WILD-TYPE" "OR4M1 WILD-TYPE" "OR4M1 WILD-TYPE" "OR4M1 WILD-TYPE" 
     TCGA-05-4427      TCGA-05-4430      TCGA-05-4432      TCGA-05-4433 
  "OR4M1 MUTATED" "OR4M1 WILD-TYPE" "OR4M1 WILD-TYPE" "OR4M1 WILD-TYPE" 
     TCGA-05-4434      TCGA-05-5420      TCGA-05-5423      TCGA-05-5425 
"OR4M1 WILD-TYPE" "OR4M1 WILD-TYPE" "OR4M1 WILD-TYPE" "OR4M1 WILD-TYPE" 
     TCGA-05-5429      TCGA-05-5715      TCGA-35-3615      TCGA-35-4122 
"OR4M1 WILD-TYPE" "OR4M1 WILD-TYPE" "OR4M1 WILD-TYPE" "OR4M1 WILD-TYPE" 
     TCGA-35-4123      TCGA-35-5375      TCGA-38-4625      TCGA-38-4626 
"OR4M1 WILD-TYPE" "OR4M1 WILD-TYPE" "OR4M1 WILD-TYPE" "OR4M1 WILD-TYPE" 
     TCGA-38-4627      TCGA-38-4628      TCGA-38-4629      TCGA-38-4630 
"OR4M1 WILD-TYPE" "OR4M1 WILD-TYPE"   "OR4M1 MUTATED" "OR4M1 WILD-TYPE" 
     TCGA-38-4631      TCGA-38-4632      TCGA-38-6178      TCGA-44-2655 
"OR4M1 WILD-TYPE" "OR4M1 WILD-TYPE" "OR4M1 WILD-TYPE" "OR4M1 WILD-TYPE" 
     TCGA-44-2656      TCGA-44-2657      TCGA-44-2659      TCGA-44-2661 
"OR4M1 WILD-TYPE" "OR4M1 WILD-TYPE" "OR4M1 WILD-TYPE" "OR4M1 WILD-TYPE" 
     TCGA-44-2662      TCGA-44-2665      TCGA-44-2666      TCGA-44-2668 
"OR4M1 WILD-TYPE" "OR4M1 WILD-TYPE" "OR4M1 WILD-TYPE" "OR4M1 WILD-TYPE" 
     TCGA-44-3396      TCGA-44-3398      TCGA-44-3918      TCGA-44-3919 
"OR4M1 WILD-TYPE" "OR4M1 WILD-TYPE" "OR4M1 WILD-TYPE" "OR4M1 WILD-TYPE" 
     TCGA-44-4112      TCGA-44-5643      TCGA-44-5645      TCGA-44-6144 
"OR4M1 WILD-TYPE" "OR4M1 WILD-TYPE" "OR4M1 WILD-TYPE" "OR4M1 WILD-TYPE" 
     TCGA-44-6145      TCGA-44-6146      TCGA-44-6147      TCGA-44-6148 
"OR4M1 WILD-TYPE" "OR4M1 WILD-TYPE" "OR4M1 WILD-TYPE" "OR4M1 WILD-TYPE" 
     TCGA-44-6774      TCGA-44-6775      TCGA-44-6776      TCGA-44-6777 
  "OR4M1 MUTATED" "OR4M1 WILD-TYPE" "OR4M1 WILD-TYPE" "OR4M1 WILD-TYPE" 
     TCGA-44-6778      TCGA-44-6779      TCGA-49-4486      TCGA-49-4487 
"OR4M1 WILD-TYPE" "OR4M1 WILD-TYPE" "OR4M1 WILD-TYPE" "OR4M1 WILD-TYPE" 
     TCGA-49-4488      TCGA-49-4490      TCGA-49-4494      TCGA-49-4501 
"OR4M1 WILD-TYPE" "OR4M1 WILD-TYPE" "OR4M1 WILD-TYPE" "OR4M1 WILD-TYPE" 
     TCGA-49-4505      TCGA-49-4506      TCGA-49-4507      TCGA-49-4510 
"OR4M1 WILD-TYPE" "OR4M1 WILD-TYPE" "OR4M1 WILD-TYPE" "OR4M1 WILD-TYPE" 
     TCGA-49-4512      TCGA-49-4514      TCGA-49-6742      TCGA-49-6743 
"OR4M1 WILD-TYPE" "OR4M1 WILD-TYPE" "OR4M1 WILD-TYPE"   "OR4M1 MUTATED" 
     TCGA-49-6744      TCGA-49-6745      TCGA-50-5044      TCGA-50-5045 
"OR4M1 WILD-TYPE" "OR4M1 WILD-TYPE" "OR4M1 WILD-TYPE"   "OR4M1 MUTATED" 
     TCGA-50-5049      TCGA-50-5051      TCGA-50-5055      TCGA-50-5066 
"OR4M1 WILD-TYPE"   "OR4M1 MUTATED" "OR4M1 WILD-TYPE" "OR4M1 WILD-TYPE" 
     TCGA-50-5068      TCGA-50-5072      TCGA-50-5930      TCGA-50-5931 
"OR4M1 WILD-TYPE" "OR4M1 WILD-TYPE" "OR4M1 WILD-TYPE" "OR4M1 WILD-TYPE" 
     TCGA-50-5932      TCGA-50-5933      TCGA-50-5935      TCGA-50-5936 
"OR4M1 WILD-TYPE" "OR4M1 WILD-TYPE" "OR4M1 WILD-TYPE" "OR4M1 WILD-TYPE" 
     TCGA-50-5939      TCGA-50-5941      TCGA-50-5942      TCGA-50-5944 
"OR4M1 WILD-TYPE" "OR4M1 WILD-TYPE" "OR4M1 WILD-TYPE" "OR4M1 WILD-TYPE" 
     TCGA-50-5946      TCGA-50-6590      TCGA-50-6591      TCGA-50-6592 
"OR4M1 WILD-TYPE" "OR4M1 WILD-TYPE" "OR4M1 WILD-TYPE" "OR4M1 WILD-TYPE" 
     TCGA-50-6593      TCGA-50-6594      TCGA-50-6595      TCGA-50-6597 
"OR4M1 WILD-TYPE" "OR4M1 WILD-TYPE" "OR4M1 WILD-TYPE" "OR4M1 WILD-TYPE" 
     TCGA-55-1592      TCGA-55-1594      TCGA-55-1595      TCGA-55-1596 
"OR4M1 WILD-TYPE" "OR4M1 WILD-TYPE" "OR4M1 WILD-TYPE" "OR4M1 WILD-TYPE" 
     TCGA-55-5899      TCGA-55-6543      TCGA-55-6642      TCGA-55-6712 
  "OR4M1 MUTATED" "OR4M1 WILD-TYPE" "OR4M1 WILD-TYPE" "OR4M1 WILD-TYPE" 
     TCGA-64-1676      TCGA-64-1677      TCGA-64-1678      TCGA-64-1680 
"OR4M1 WILD-TYPE" "OR4M1 WILD-TYPE" "OR4M1 WILD-TYPE" "OR4M1 WILD-TYPE" 
     TCGA-64-5774      TCGA-64-5775      TCGA-64-5778      TCGA-64-5779 
"OR4M1 WILD-TYPE" "OR4M1 WILD-TYPE" "OR4M1 WILD-TYPE" "OR4M1 WILD-TYPE" 
     TCGA-64-5781      TCGA-64-5815      TCGA-67-3770      TCGA-67-3771 
"OR4M1 WILD-TYPE" "OR4M1 WILD-TYPE" "OR4M1 WILD-TYPE" "OR4M1 WILD-TYPE" 
     TCGA-67-3772      TCGA-67-3773      TCGA-67-3774      TCGA-67-6215 
"OR4M1 WILD-TYPE" "OR4M1 WILD-TYPE" "OR4M1 WILD-TYPE" "OR4M1 WILD-TYPE" 
     TCGA-67-6216      TCGA-67-6217      TCGA-71-6725      TCGA-73-4658 
"OR4M1 WILD-TYPE" "OR4M1 WILD-TYPE" "OR4M1 WILD-TYPE" "OR4M1 WILD-TYPE" 
     TCGA-73-4659      TCGA-73-4662      TCGA-73-4666      TCGA-73-4668 
"OR4M1 WILD-TYPE" "OR4M1 WILD-TYPE" "OR4M1 WILD-TYPE" "OR4M1 WILD-TYPE" 
     TCGA-73-4670      TCGA-73-4675      TCGA-73-4676      TCGA-73-4677 
"OR4M1 WILD-TYPE" "OR4M1 WILD-TYPE" "OR4M1 WILD-TYPE" "OR4M1 WILD-TYPE" 
     TCGA-91-6828      TCGA-91-6829      TCGA-91-6831      TCGA-91-6835 
"OR4M1 WILD-TYPE" "OR4M1 WILD-TYPE" "OR4M1 WILD-TYPE" "OR4M1 WILD-TYPE" 
     TCGA-91-6836 
"OR4M1 WILD-TYPE" 
[1] "hr=" "1.1"
D177V2, continuous
D177V3, binary
[1] "tbl2"
                 cls
clus              [,1] [,2]
  OR4M1 MUTATED      5    3
  OR4M1 WILD-TYPE   88   76
        clus
vv       OR4M1 MUTATED OR4M1 WILD-TYPE
  FEMALE             5              88
  MALE               3              76
D177V4, continuous
D177V5, multiclass
D177V6, multiclass
    clus
vv   OR4M1 MUTATED OR4M1 WILD-TYPE
  T1             3              38
  T2             3             105
  T3             1              13
  T4             1               7
D177V7, multiclass
       clus
vv      OR4M1 MUTATED OR4M1 WILD-TYPE
  N0                1              94
  N1                4              33
  N2+N3             3              32
D177V8, multiclass
    clus
vv   OR4M1 MUTATED OR4M1 WILD-TYPE
  M0             7             130
  M1             0               9
  MX             1              21
D177V9, multiclass
     clus
vv    OR4M1 MUTATED OR4M1 WILD-TYPE
  I               2              86
  II              2              31
  III             4              35
  IV              0               9
D177V10, binary
[1] "tbl2"
                 cls
clus              [,1] [,2]
  OR4M1 MUTATED      2    6
  OR4M1 WILD-TYPE   14  150
     clus
vv    OR4M1 MUTATED OR4M1 WILD-TYPE
  NO              2              14
  YES             6             150
D177V11, continuous
D177V12, continuous
D177V13, multiclass
                                             clus
vv                                            OR4M1 MUTATED OR4M1 WILD-TYPE
  CURRENT REFORMED SMOKER FOR < OR = 15 YEARS             4              58
  CURRENT REFORMED SMOKER FOR > 15 YEARS                  1              45
  CURRENT SMOKER                                          2              26
  LIFELONG NON-SMOKER                                     0              24
D177V14, continuous

Clustering(178) Variable = ZBBX MUTATION ANALYSIS
D178V1, survival
                sevent
clus2             0  1
  ZBBX MUTATED    5  4
  ZBBX WILD-TYPE 94 46
  ZBBX MUTATED ZBBX WILD-TYPE 
             9            140 
  ZBBX MUTATED ZBBX WILD-TYPE 
             4             46 
$`ZBBX MUTATED`
TCGA-05-4249 TCGA-05-4382 TCGA-38-4632 TCGA-44-2657 TCGA-44-2662 TCGA-49-4488 
       38.07        19.92        44.61        13.15        15.78        28.57 
TCGA-49-4507 TCGA-55-1592 TCGA-64-1676 
        8.81        23.05        56.81 

$`ZBBX WILD-TYPE`
TCGA-05-4250 TCGA-05-4384 TCGA-05-4390 TCGA-05-4396 TCGA-05-4397 TCGA-05-4398 
        3.98        14.01        37.02         9.96        24.03        47.05 
TCGA-05-4402 TCGA-05-4405 TCGA-05-4415 TCGA-05-4417 TCGA-05-4418 TCGA-05-4420 
        8.02        20.05         2.96        14.93         8.98        29.95 
TCGA-05-4424 TCGA-05-4426 TCGA-05-4427 TCGA-05-4430 TCGA-05-4432 TCGA-05-4433 
       30.02        26.01        26.01        25.02        25.02        24.00 
TCGA-05-4434 TCGA-05-5420 TCGA-05-5423 TCGA-05-5425 TCGA-05-5429 TCGA-05-5715 
       15.02         1.02         4.96         2.96         0.99         2.04 
TCGA-35-3615 TCGA-35-4122 TCGA-35-4123 TCGA-35-5375 TCGA-38-4625 TCGA-38-4626 
        0.46         7.36         5.95         8.68        47.61        85.32 
TCGA-38-4627 TCGA-38-4628 TCGA-38-4629 TCGA-38-4630 TCGA-38-4631 TCGA-38-6178 
       37.71        49.02        28.37        35.28        11.64         5.19 
TCGA-44-2655 TCGA-44-2656 TCGA-44-2659 TCGA-44-2661 TCGA-44-2665 TCGA-44-2666 
       18.87        19.10        17.39         3.39        13.15         3.19 
TCGA-44-2668 TCGA-44-3396 TCGA-44-3398 TCGA-44-3918 TCGA-44-3919 TCGA-44-4112 
        8.09        10.22         8.32         6.44         6.21         4.60 
TCGA-44-5643 TCGA-44-5645 TCGA-44-6144 TCGA-44-6145 TCGA-44-6146 TCGA-44-6147 
        3.48         6.84         0.30         3.35         9.93         7.76 
TCGA-44-6148 TCGA-44-6774 TCGA-44-6775 TCGA-44-6776 TCGA-44-6777 TCGA-44-6778 
        3.12         5.42         2.70        63.72        32.45        36.49 
TCGA-44-6779 TCGA-49-4486 TCGA-49-4487 TCGA-49-4490 TCGA-49-4494 TCGA-49-4501 
       16.41        76.21        28.11        12.66        35.54        46.72 
TCGA-49-4505 TCGA-49-4506 TCGA-49-4510 TCGA-49-4512 TCGA-49-4514 TCGA-49-6742 
       14.07        32.84        29.46        29.75        43.20        15.02 
TCGA-49-6743 TCGA-49-6744 TCGA-49-6745 TCGA-50-5044 TCGA-50-5045 TCGA-50-5049 
       12.13        12.99         4.93        20.48        71.47        48.82 
TCGA-50-5051 TCGA-50-5055 TCGA-50-5066 TCGA-50-5068 TCGA-50-5072 TCGA-50-5930 
       14.96        25.81         9.76        49.28         8.05         9.27 
TCGA-50-5931 TCGA-50-5932 TCGA-50-5933 TCGA-50-5935 TCGA-50-5936 TCGA-50-5939 
        8.78        35.87        77.88        21.47         8.45        15.12 
TCGA-50-5941 TCGA-50-5942 TCGA-50-5944 TCGA-50-5946 TCGA-50-6590 TCGA-50-6591 
        9.37         4.44        12.26        11.47        42.31         3.88 
TCGA-50-6592 TCGA-50-6593 TCGA-50-6594 TCGA-50-6595 TCGA-50-6597 TCGA-55-1594 
       25.51        11.05        12.16         6.21        33.37        38.73 
TCGA-55-1595 TCGA-55-1596 TCGA-55-5899 TCGA-55-6543 TCGA-55-6642 TCGA-55-6712 
       48.62        45.17         2.86         0.07        32.61         0.79 
TCGA-64-1677 TCGA-64-1678 TCGA-64-1680 TCGA-64-5774 TCGA-64-5775 TCGA-64-5778 
       20.65        39.09        37.02        83.84         0.10        30.44 
TCGA-64-5779 TCGA-64-5781 TCGA-64-5815 TCGA-67-3770 TCGA-67-3771 TCGA-67-3772 
       16.67        39.52         7.33         0.99         1.97         0.59 
TCGA-67-3773 TCGA-67-3774 TCGA-67-6215 TCGA-67-6216 TCGA-67-6217 TCGA-71-6725 
        2.04         0.59         0.89         0.69        13.87         2.01 
TCGA-73-4658 TCGA-73-4659 TCGA-73-4662 TCGA-73-4666 TCGA-73-4668 TCGA-73-4670 
       52.57        23.38        29.95        20.28        15.35         0.46 
TCGA-73-4675 TCGA-73-4676 TCGA-73-4677 TCGA-91-6828 TCGA-91-6829 TCGA-91-6831 
        1.32         4.01         1.25         1.22        41.33         1.28 
TCGA-91-6835 TCGA-91-6836 
        1.15         0.36 

  ZBBX MUTATED ZBBX WILD-TYPE 
          8.81           0.07 
  ZBBX MUTATED ZBBX WILD-TYPE 
         56.81          85.32 
  ZBBX MUTATED ZBBX WILD-TYPE 
        23.050         12.825 
[1] "8.8 - 56.8 (23.1)" "0.1 - 85.3 (12.8)"
    TCGA-05-4249     TCGA-05-4250     TCGA-05-4382     TCGA-05-4384 
  "ZBBX MUTATED" "ZBBX WILD-TYPE"   "ZBBX MUTATED" "ZBBX WILD-TYPE" 
    TCGA-05-4390     TCGA-05-4396     TCGA-05-4397     TCGA-05-4398 
"ZBBX WILD-TYPE" "ZBBX WILD-TYPE" "ZBBX WILD-TYPE" "ZBBX WILD-TYPE" 
    TCGA-05-4402     TCGA-05-4405     TCGA-05-4415     TCGA-05-4417 
"ZBBX WILD-TYPE" "ZBBX WILD-TYPE" "ZBBX WILD-TYPE" "ZBBX WILD-TYPE" 
    TCGA-05-4418     TCGA-05-4420     TCGA-05-4424     TCGA-05-4426 
"ZBBX WILD-TYPE" "ZBBX WILD-TYPE" "ZBBX WILD-TYPE" "ZBBX WILD-TYPE" 
    TCGA-05-4427     TCGA-05-4430     TCGA-05-4432     TCGA-05-4433 
"ZBBX WILD-TYPE" "ZBBX WILD-TYPE" "ZBBX WILD-TYPE" "ZBBX WILD-TYPE" 
    TCGA-05-4434     TCGA-05-5420     TCGA-05-5423     TCGA-05-5425 
"ZBBX WILD-TYPE" "ZBBX WILD-TYPE" "ZBBX WILD-TYPE" "ZBBX WILD-TYPE" 
    TCGA-05-5429     TCGA-05-5715     TCGA-35-3615     TCGA-35-4122 
"ZBBX WILD-TYPE" "ZBBX WILD-TYPE" "ZBBX WILD-TYPE" "ZBBX WILD-TYPE" 
    TCGA-35-4123     TCGA-35-5375     TCGA-38-4625     TCGA-38-4626 
"ZBBX WILD-TYPE" "ZBBX WILD-TYPE" "ZBBX WILD-TYPE" "ZBBX WILD-TYPE" 
    TCGA-38-4627     TCGA-38-4628     TCGA-38-4629     TCGA-38-4630 
"ZBBX WILD-TYPE" "ZBBX WILD-TYPE" "ZBBX WILD-TYPE" "ZBBX WILD-TYPE" 
    TCGA-38-4631     TCGA-38-4632     TCGA-38-6178     TCGA-44-2655 
"ZBBX WILD-TYPE"   "ZBBX MUTATED" "ZBBX WILD-TYPE" "ZBBX WILD-TYPE" 
    TCGA-44-2656     TCGA-44-2657     TCGA-44-2659     TCGA-44-2661 
"ZBBX WILD-TYPE"   "ZBBX MUTATED" "ZBBX WILD-TYPE" "ZBBX WILD-TYPE" 
    TCGA-44-2662     TCGA-44-2665     TCGA-44-2666     TCGA-44-2668 
  "ZBBX MUTATED" "ZBBX WILD-TYPE" "ZBBX WILD-TYPE" "ZBBX WILD-TYPE" 
    TCGA-44-3396     TCGA-44-3398     TCGA-44-3918     TCGA-44-3919 
"ZBBX WILD-TYPE" "ZBBX WILD-TYPE" "ZBBX WILD-TYPE" "ZBBX WILD-TYPE" 
    TCGA-44-4112     TCGA-44-5643     TCGA-44-5645     TCGA-44-6144 
"ZBBX WILD-TYPE" "ZBBX WILD-TYPE" "ZBBX WILD-TYPE" "ZBBX WILD-TYPE" 
    TCGA-44-6145     TCGA-44-6146     TCGA-44-6147     TCGA-44-6148 
"ZBBX WILD-TYPE" "ZBBX WILD-TYPE" "ZBBX WILD-TYPE" "ZBBX WILD-TYPE" 
    TCGA-44-6774     TCGA-44-6775     TCGA-44-6776     TCGA-44-6777 
"ZBBX WILD-TYPE" "ZBBX WILD-TYPE" "ZBBX WILD-TYPE" "ZBBX WILD-TYPE" 
    TCGA-44-6778     TCGA-44-6779     TCGA-49-4486     TCGA-49-4487 
"ZBBX WILD-TYPE" "ZBBX WILD-TYPE" "ZBBX WILD-TYPE" "ZBBX WILD-TYPE" 
    TCGA-49-4488     TCGA-49-4490     TCGA-49-4494     TCGA-49-4501 
  "ZBBX MUTATED" "ZBBX WILD-TYPE" "ZBBX WILD-TYPE" "ZBBX WILD-TYPE" 
    TCGA-49-4505     TCGA-49-4506     TCGA-49-4507     TCGA-49-4510 
"ZBBX WILD-TYPE" "ZBBX WILD-TYPE"   "ZBBX MUTATED" "ZBBX WILD-TYPE" 
    TCGA-49-4512     TCGA-49-4514     TCGA-49-6742     TCGA-49-6743 
"ZBBX WILD-TYPE" "ZBBX WILD-TYPE" "ZBBX WILD-TYPE" "ZBBX WILD-TYPE" 
    TCGA-49-6744     TCGA-49-6745     TCGA-50-5044     TCGA-50-5045 
"ZBBX WILD-TYPE" "ZBBX WILD-TYPE" "ZBBX WILD-TYPE" "ZBBX WILD-TYPE" 
    TCGA-50-5049     TCGA-50-5051     TCGA-50-5055     TCGA-50-5066 
"ZBBX WILD-TYPE" "ZBBX WILD-TYPE" "ZBBX WILD-TYPE" "ZBBX WILD-TYPE" 
    TCGA-50-5068     TCGA-50-5072     TCGA-50-5930     TCGA-50-5931 
"ZBBX WILD-TYPE" "ZBBX WILD-TYPE" "ZBBX WILD-TYPE" "ZBBX WILD-TYPE" 
    TCGA-50-5932     TCGA-50-5933     TCGA-50-5935     TCGA-50-5936 
"ZBBX WILD-TYPE" "ZBBX WILD-TYPE" "ZBBX WILD-TYPE" "ZBBX WILD-TYPE" 
    TCGA-50-5939     TCGA-50-5941     TCGA-50-5942     TCGA-50-5944 
"ZBBX WILD-TYPE" "ZBBX WILD-TYPE" "ZBBX WILD-TYPE" "ZBBX WILD-TYPE" 
    TCGA-50-5946     TCGA-50-6590     TCGA-50-6591     TCGA-50-6592 
"ZBBX WILD-TYPE" "ZBBX WILD-TYPE" "ZBBX WILD-TYPE" "ZBBX WILD-TYPE" 
    TCGA-50-6593     TCGA-50-6594     TCGA-50-6595     TCGA-50-6597 
"ZBBX WILD-TYPE" "ZBBX WILD-TYPE" "ZBBX WILD-TYPE" "ZBBX WILD-TYPE" 
    TCGA-55-1592     TCGA-55-1594     TCGA-55-1595     TCGA-55-1596 
  "ZBBX MUTATED" "ZBBX WILD-TYPE" "ZBBX WILD-TYPE" "ZBBX WILD-TYPE" 
    TCGA-55-5899     TCGA-55-6543     TCGA-55-6642     TCGA-55-6712 
"ZBBX WILD-TYPE" "ZBBX WILD-TYPE" "ZBBX WILD-TYPE" "ZBBX WILD-TYPE" 
    TCGA-64-1676     TCGA-64-1677     TCGA-64-1678     TCGA-64-1680 
  "ZBBX MUTATED" "ZBBX WILD-TYPE" "ZBBX WILD-TYPE" "ZBBX WILD-TYPE" 
    TCGA-64-5774     TCGA-64-5775     TCGA-64-5778     TCGA-64-5779 
"ZBBX WILD-TYPE" "ZBBX WILD-TYPE" "ZBBX WILD-TYPE" "ZBBX WILD-TYPE" 
    TCGA-64-5781     TCGA-64-5815     TCGA-67-3770     TCGA-67-3771 
"ZBBX WILD-TYPE" "ZBBX WILD-TYPE" "ZBBX WILD-TYPE" "ZBBX WILD-TYPE" 
    TCGA-67-3772     TCGA-67-3773     TCGA-67-3774     TCGA-67-6215 
"ZBBX WILD-TYPE" "ZBBX WILD-TYPE" "ZBBX WILD-TYPE" "ZBBX WILD-TYPE" 
    TCGA-67-6216     TCGA-67-6217     TCGA-71-6725     TCGA-73-4658 
"ZBBX WILD-TYPE" "ZBBX WILD-TYPE" "ZBBX WILD-TYPE" "ZBBX WILD-TYPE" 
    TCGA-73-4659     TCGA-73-4662     TCGA-73-4666     TCGA-73-4668 
"ZBBX WILD-TYPE" "ZBBX WILD-TYPE" "ZBBX WILD-TYPE" "ZBBX WILD-TYPE" 
    TCGA-73-4670     TCGA-73-4675     TCGA-73-4676     TCGA-73-4677 
"ZBBX WILD-TYPE" "ZBBX WILD-TYPE" "ZBBX WILD-TYPE" "ZBBX WILD-TYPE" 
    TCGA-91-6828     TCGA-91-6829     TCGA-91-6831     TCGA-91-6835 
"ZBBX WILD-TYPE" "ZBBX WILD-TYPE" "ZBBX WILD-TYPE" "ZBBX WILD-TYPE" 
    TCGA-91-6836 
"ZBBX WILD-TYPE" 
    TCGA-05-4249     TCGA-05-4250     TCGA-05-4382     TCGA-05-4384 
  "ZBBX MUTATED" "ZBBX WILD-TYPE"   "ZBBX MUTATED" "ZBBX WILD-TYPE" 
    TCGA-05-4390     TCGA-05-4396     TCGA-05-4397     TCGA-05-4398 
"ZBBX WILD-TYPE" "ZBBX WILD-TYPE" "ZBBX WILD-TYPE" "ZBBX WILD-TYPE" 
    TCGA-05-4402     TCGA-05-4405     TCGA-05-4415     TCGA-05-4417 
"ZBBX WILD-TYPE" "ZBBX WILD-TYPE" "ZBBX WILD-TYPE" "ZBBX WILD-TYPE" 
    TCGA-05-4418     TCGA-05-4420     TCGA-05-4424     TCGA-05-4426 
"ZBBX WILD-TYPE" "ZBBX WILD-TYPE" "ZBBX WILD-TYPE" "ZBBX WILD-TYPE" 
    TCGA-05-4427     TCGA-05-4430     TCGA-05-4432     TCGA-05-4433 
"ZBBX WILD-TYPE" "ZBBX WILD-TYPE" "ZBBX WILD-TYPE" "ZBBX WILD-TYPE" 
    TCGA-05-4434     TCGA-05-5420     TCGA-05-5423     TCGA-05-5425 
"ZBBX WILD-TYPE" "ZBBX WILD-TYPE" "ZBBX WILD-TYPE" "ZBBX WILD-TYPE" 
    TCGA-05-5429     TCGA-05-5715     TCGA-35-3615     TCGA-35-4122 
"ZBBX WILD-TYPE" "ZBBX WILD-TYPE" "ZBBX WILD-TYPE" "ZBBX WILD-TYPE" 
    TCGA-35-4123     TCGA-35-5375     TCGA-38-4625     TCGA-38-4626 
"ZBBX WILD-TYPE" "ZBBX WILD-TYPE" "ZBBX WILD-TYPE" "ZBBX WILD-TYPE" 
    TCGA-38-4627     TCGA-38-4628     TCGA-38-4629     TCGA-38-4630 
"ZBBX WILD-TYPE" "ZBBX WILD-TYPE" "ZBBX WILD-TYPE" "ZBBX WILD-TYPE" 
    TCGA-38-4631     TCGA-38-4632     TCGA-38-6178     TCGA-44-2655 
"ZBBX WILD-TYPE"   "ZBBX MUTATED" "ZBBX WILD-TYPE" "ZBBX WILD-TYPE" 
    TCGA-44-2656     TCGA-44-2657     TCGA-44-2659     TCGA-44-2661 
"ZBBX WILD-TYPE"   "ZBBX MUTATED" "ZBBX WILD-TYPE" "ZBBX WILD-TYPE" 
    TCGA-44-2662     TCGA-44-2665     TCGA-44-2666     TCGA-44-2668 
  "ZBBX MUTATED" "ZBBX WILD-TYPE" "ZBBX WILD-TYPE" "ZBBX WILD-TYPE" 
    TCGA-44-3396     TCGA-44-3398     TCGA-44-3918     TCGA-44-3919 
"ZBBX WILD-TYPE" "ZBBX WILD-TYPE" "ZBBX WILD-TYPE" "ZBBX WILD-TYPE" 
    TCGA-44-4112     TCGA-44-5643     TCGA-44-5645     TCGA-44-6144 
"ZBBX WILD-TYPE" "ZBBX WILD-TYPE" "ZBBX WILD-TYPE" "ZBBX WILD-TYPE" 
    TCGA-44-6145     TCGA-44-6146     TCGA-44-6147     TCGA-44-6148 
"ZBBX WILD-TYPE" "ZBBX WILD-TYPE" "ZBBX WILD-TYPE" "ZBBX WILD-TYPE" 
    TCGA-44-6774     TCGA-44-6775     TCGA-44-6776     TCGA-44-6777 
"ZBBX WILD-TYPE" "ZBBX WILD-TYPE" "ZBBX WILD-TYPE" "ZBBX WILD-TYPE" 
    TCGA-44-6778     TCGA-44-6779     TCGA-49-4486     TCGA-49-4487 
"ZBBX WILD-TYPE" "ZBBX WILD-TYPE" "ZBBX WILD-TYPE" "ZBBX WILD-TYPE" 
    TCGA-49-4488     TCGA-49-4490     TCGA-49-4494     TCGA-49-4501 
  "ZBBX MUTATED" "ZBBX WILD-TYPE" "ZBBX WILD-TYPE" "ZBBX WILD-TYPE" 
    TCGA-49-4505     TCGA-49-4506     TCGA-49-4507     TCGA-49-4510 
"ZBBX WILD-TYPE" "ZBBX WILD-TYPE"   "ZBBX MUTATED" "ZBBX WILD-TYPE" 
    TCGA-49-4512     TCGA-49-4514     TCGA-49-6742     TCGA-49-6743 
"ZBBX WILD-TYPE" "ZBBX WILD-TYPE" "ZBBX WILD-TYPE" "ZBBX WILD-TYPE" 
    TCGA-49-6744     TCGA-49-6745     TCGA-50-5044     TCGA-50-5045 
"ZBBX WILD-TYPE" "ZBBX WILD-TYPE" "ZBBX WILD-TYPE" "ZBBX WILD-TYPE" 
    TCGA-50-5049     TCGA-50-5051     TCGA-50-5055     TCGA-50-5066 
"ZBBX WILD-TYPE" "ZBBX WILD-TYPE" "ZBBX WILD-TYPE" "ZBBX WILD-TYPE" 
    TCGA-50-5068     TCGA-50-5072     TCGA-50-5930     TCGA-50-5931 
"ZBBX WILD-TYPE" "ZBBX WILD-TYPE" "ZBBX WILD-TYPE" "ZBBX WILD-TYPE" 
    TCGA-50-5932     TCGA-50-5933     TCGA-50-5935     TCGA-50-5936 
"ZBBX WILD-TYPE" "ZBBX WILD-TYPE" "ZBBX WILD-TYPE" "ZBBX WILD-TYPE" 
    TCGA-50-5939     TCGA-50-5941     TCGA-50-5942     TCGA-50-5944 
"ZBBX WILD-TYPE" "ZBBX WILD-TYPE" "ZBBX WILD-TYPE" "ZBBX WILD-TYPE" 
    TCGA-50-5946     TCGA-50-6590     TCGA-50-6591     TCGA-50-6592 
"ZBBX WILD-TYPE" "ZBBX WILD-TYPE" "ZBBX WILD-TYPE" "ZBBX WILD-TYPE" 
    TCGA-50-6593     TCGA-50-6594     TCGA-50-6595     TCGA-50-6597 
"ZBBX WILD-TYPE" "ZBBX WILD-TYPE" "ZBBX WILD-TYPE" "ZBBX WILD-TYPE" 
    TCGA-55-1592     TCGA-55-1594     TCGA-55-1595     TCGA-55-1596 
  "ZBBX MUTATED" "ZBBX WILD-TYPE" "ZBBX WILD-TYPE" "ZBBX WILD-TYPE" 
    TCGA-55-5899     TCGA-55-6543     TCGA-55-6642     TCGA-55-6712 
"ZBBX WILD-TYPE" "ZBBX WILD-TYPE" "ZBBX WILD-TYPE" "ZBBX WILD-TYPE" 
    TCGA-64-1676     TCGA-64-1677     TCGA-64-1678     TCGA-64-1680 
  "ZBBX MUTATED" "ZBBX WILD-TYPE" "ZBBX WILD-TYPE" "ZBBX WILD-TYPE" 
    TCGA-64-5774     TCGA-64-5775     TCGA-64-5778     TCGA-64-5779 
"ZBBX WILD-TYPE" "ZBBX WILD-TYPE" "ZBBX WILD-TYPE" "ZBBX WILD-TYPE" 
    TCGA-64-5781     TCGA-64-5815     TCGA-67-3770     TCGA-67-3771 
"ZBBX WILD-TYPE" "ZBBX WILD-TYPE" "ZBBX WILD-TYPE" "ZBBX WILD-TYPE" 
    TCGA-67-3772     TCGA-67-3773     TCGA-67-3774     TCGA-67-6215 
"ZBBX WILD-TYPE" "ZBBX WILD-TYPE" "ZBBX WILD-TYPE" "ZBBX WILD-TYPE" 
    TCGA-67-6216     TCGA-67-6217     TCGA-71-6725     TCGA-73-4658 
"ZBBX WILD-TYPE" "ZBBX WILD-TYPE" "ZBBX WILD-TYPE" "ZBBX WILD-TYPE" 
    TCGA-73-4659     TCGA-73-4662     TCGA-73-4666     TCGA-73-4668 
"ZBBX WILD-TYPE" "ZBBX WILD-TYPE" "ZBBX WILD-TYPE" "ZBBX WILD-TYPE" 
    TCGA-73-4670     TCGA-73-4675     TCGA-73-4676     TCGA-73-4677 
"ZBBX WILD-TYPE" "ZBBX WILD-TYPE" "ZBBX WILD-TYPE" "ZBBX WILD-TYPE" 
    TCGA-91-6828     TCGA-91-6829     TCGA-91-6831     TCGA-91-6835 
"ZBBX WILD-TYPE" "ZBBX WILD-TYPE" "ZBBX WILD-TYPE" "ZBBX WILD-TYPE" 
    TCGA-91-6836 
"ZBBX WILD-TYPE" 
    TCGA-05-4249     TCGA-05-4250     TCGA-05-4382     TCGA-05-4384 
  "ZBBX MUTATED" "ZBBX WILD-TYPE"   "ZBBX MUTATED" "ZBBX WILD-TYPE" 
    TCGA-05-4390     TCGA-05-4396     TCGA-05-4397     TCGA-05-4398 
"ZBBX WILD-TYPE" "ZBBX WILD-TYPE" "ZBBX WILD-TYPE" "ZBBX WILD-TYPE" 
    TCGA-05-4402     TCGA-05-4405     TCGA-05-4415     TCGA-05-4417 
"ZBBX WILD-TYPE" "ZBBX WILD-TYPE" "ZBBX WILD-TYPE" "ZBBX WILD-TYPE" 
    TCGA-05-4418     TCGA-05-4420     TCGA-05-4424     TCGA-05-4426 
"ZBBX WILD-TYPE" "ZBBX WILD-TYPE" "ZBBX WILD-TYPE" "ZBBX WILD-TYPE" 
    TCGA-05-4427     TCGA-05-4430     TCGA-05-4432     TCGA-05-4433 
"ZBBX WILD-TYPE" "ZBBX WILD-TYPE" "ZBBX WILD-TYPE" "ZBBX WILD-TYPE" 
    TCGA-05-4434     TCGA-05-5420     TCGA-05-5423     TCGA-05-5425 
"ZBBX WILD-TYPE" "ZBBX WILD-TYPE" "ZBBX WILD-TYPE" "ZBBX WILD-TYPE" 
    TCGA-05-5429     TCGA-05-5715     TCGA-35-3615     TCGA-35-4122 
"ZBBX WILD-TYPE" "ZBBX WILD-TYPE" "ZBBX WILD-TYPE" "ZBBX WILD-TYPE" 
    TCGA-35-4123     TCGA-35-5375     TCGA-38-4625     TCGA-38-4626 
"ZBBX WILD-TYPE" "ZBBX WILD-TYPE" "ZBBX WILD-TYPE" "ZBBX WILD-TYPE" 
    TCGA-38-4627     TCGA-38-4628     TCGA-38-4629     TCGA-38-4630 
"ZBBX WILD-TYPE" "ZBBX WILD-TYPE" "ZBBX WILD-TYPE" "ZBBX WILD-TYPE" 
    TCGA-38-4631     TCGA-38-4632     TCGA-38-6178     TCGA-44-2655 
"ZBBX WILD-TYPE"   "ZBBX MUTATED" "ZBBX WILD-TYPE" "ZBBX WILD-TYPE" 
    TCGA-44-2656     TCGA-44-2657     TCGA-44-2659     TCGA-44-2661 
"ZBBX WILD-TYPE"   "ZBBX MUTATED" "ZBBX WILD-TYPE" "ZBBX WILD-TYPE" 
    TCGA-44-2662     TCGA-44-2665     TCGA-44-2666     TCGA-44-2668 
  "ZBBX MUTATED" "ZBBX WILD-TYPE" "ZBBX WILD-TYPE" "ZBBX WILD-TYPE" 
    TCGA-44-3396     TCGA-44-3398     TCGA-44-3918     TCGA-44-3919 
"ZBBX WILD-TYPE" "ZBBX WILD-TYPE" "ZBBX WILD-TYPE" "ZBBX WILD-TYPE" 
    TCGA-44-4112     TCGA-44-5643     TCGA-44-5645     TCGA-44-6144 
"ZBBX WILD-TYPE" "ZBBX WILD-TYPE" "ZBBX WILD-TYPE" "ZBBX WILD-TYPE" 
    TCGA-44-6145     TCGA-44-6146     TCGA-44-6147     TCGA-44-6148 
"ZBBX WILD-TYPE" "ZBBX WILD-TYPE" "ZBBX WILD-TYPE" "ZBBX WILD-TYPE" 
    TCGA-44-6774     TCGA-44-6775     TCGA-44-6776     TCGA-44-6777 
"ZBBX WILD-TYPE" "ZBBX WILD-TYPE" "ZBBX WILD-TYPE" "ZBBX WILD-TYPE" 
    TCGA-44-6778     TCGA-44-6779     TCGA-49-4486     TCGA-49-4487 
"ZBBX WILD-TYPE" "ZBBX WILD-TYPE" "ZBBX WILD-TYPE" "ZBBX WILD-TYPE" 
    TCGA-49-4488     TCGA-49-4490     TCGA-49-4494     TCGA-49-4501 
  "ZBBX MUTATED" "ZBBX WILD-TYPE" "ZBBX WILD-TYPE" "ZBBX WILD-TYPE" 
    TCGA-49-4505     TCGA-49-4506     TCGA-49-4507     TCGA-49-4510 
"ZBBX WILD-TYPE" "ZBBX WILD-TYPE"   "ZBBX MUTATED" "ZBBX WILD-TYPE" 
    TCGA-49-4512     TCGA-49-4514     TCGA-49-6742     TCGA-49-6743 
"ZBBX WILD-TYPE" "ZBBX WILD-TYPE" "ZBBX WILD-TYPE" "ZBBX WILD-TYPE" 
    TCGA-49-6744     TCGA-49-6745     TCGA-50-5044     TCGA-50-5045 
"ZBBX WILD-TYPE" "ZBBX WILD-TYPE" "ZBBX WILD-TYPE" "ZBBX WILD-TYPE" 
    TCGA-50-5049     TCGA-50-5051     TCGA-50-5055     TCGA-50-5066 
"ZBBX WILD-TYPE" "ZBBX WILD-TYPE" "ZBBX WILD-TYPE" "ZBBX WILD-TYPE" 
    TCGA-50-5068     TCGA-50-5072     TCGA-50-5930     TCGA-50-5931 
"ZBBX WILD-TYPE" "ZBBX WILD-TYPE" "ZBBX WILD-TYPE" "ZBBX WILD-TYPE" 
    TCGA-50-5932     TCGA-50-5933     TCGA-50-5935     TCGA-50-5936 
"ZBBX WILD-TYPE" "ZBBX WILD-TYPE" "ZBBX WILD-TYPE" "ZBBX WILD-TYPE" 
    TCGA-50-5939     TCGA-50-5941     TCGA-50-5942     TCGA-50-5944 
"ZBBX WILD-TYPE" "ZBBX WILD-TYPE" "ZBBX WILD-TYPE" "ZBBX WILD-TYPE" 
    TCGA-50-5946     TCGA-50-6590     TCGA-50-6591     TCGA-50-6592 
"ZBBX WILD-TYPE" "ZBBX WILD-TYPE" "ZBBX WILD-TYPE" "ZBBX WILD-TYPE" 
    TCGA-50-6593     TCGA-50-6594     TCGA-50-6595     TCGA-50-6597 
"ZBBX WILD-TYPE" "ZBBX WILD-TYPE" "ZBBX WILD-TYPE" "ZBBX WILD-TYPE" 
    TCGA-55-1592     TCGA-55-1594     TCGA-55-1595     TCGA-55-1596 
  "ZBBX MUTATED" "ZBBX WILD-TYPE" "ZBBX WILD-TYPE" "ZBBX WILD-TYPE" 
    TCGA-55-5899     TCGA-55-6543     TCGA-55-6642     TCGA-55-6712 
"ZBBX WILD-TYPE" "ZBBX WILD-TYPE" "ZBBX WILD-TYPE" "ZBBX WILD-TYPE" 
    TCGA-64-1676     TCGA-64-1677     TCGA-64-1678     TCGA-64-1680 
  "ZBBX MUTATED" "ZBBX WILD-TYPE" "ZBBX WILD-TYPE" "ZBBX WILD-TYPE" 
    TCGA-64-5774     TCGA-64-5775     TCGA-64-5778     TCGA-64-5779 
"ZBBX WILD-TYPE" "ZBBX WILD-TYPE" "ZBBX WILD-TYPE" "ZBBX WILD-TYPE" 
    TCGA-64-5781     TCGA-64-5815     TCGA-67-3770     TCGA-67-3771 
"ZBBX WILD-TYPE" "ZBBX WILD-TYPE" "ZBBX WILD-TYPE" "ZBBX WILD-TYPE" 
    TCGA-67-3772     TCGA-67-3773     TCGA-67-3774     TCGA-67-6215 
"ZBBX WILD-TYPE" "ZBBX WILD-TYPE" "ZBBX WILD-TYPE" "ZBBX WILD-TYPE" 
    TCGA-67-6216     TCGA-67-6217     TCGA-71-6725     TCGA-73-4658 
"ZBBX WILD-TYPE" "ZBBX WILD-TYPE" "ZBBX WILD-TYPE" "ZBBX WILD-TYPE" 
    TCGA-73-4659     TCGA-73-4662     TCGA-73-4666     TCGA-73-4668 
"ZBBX WILD-TYPE" "ZBBX WILD-TYPE" "ZBBX WILD-TYPE" "ZBBX WILD-TYPE" 
    TCGA-73-4670     TCGA-73-4675     TCGA-73-4676     TCGA-73-4677 
"ZBBX WILD-TYPE" "ZBBX WILD-TYPE" "ZBBX WILD-TYPE" "ZBBX WILD-TYPE" 
    TCGA-91-6828     TCGA-91-6829     TCGA-91-6831     TCGA-91-6835 
"ZBBX WILD-TYPE" "ZBBX WILD-TYPE" "ZBBX WILD-TYPE" "ZBBX WILD-TYPE" 
    TCGA-91-6836 
"ZBBX WILD-TYPE" 
[1] "hr=" "1.1"
D178V2, continuous
D178V3, binary
[1] "tbl2"
                cls
clus             [,1] [,2]
  ZBBX MUTATED      4    6
  ZBBX WILD-TYPE   89   73
        clus
vv       ZBBX MUTATED ZBBX WILD-TYPE
  FEMALE            4             89
  MALE              6             73
D178V4, continuous
D178V5, multiclass
D178V6, multiclass
    clus
vv   ZBBX MUTATED ZBBX WILD-TYPE
  T1            2             39
  T2            6            102
  T3            2             12
  T4            0              8
D178V7, multiclass
       clus
vv      ZBBX MUTATED ZBBX WILD-TYPE
  N0               6             89
  N1               2             35
  N2+N3            1             34
D178V8, multiclass
    clus
vv   ZBBX MUTATED ZBBX WILD-TYPE
  M0            8            129
  M1            1              8
  MX            1             21
D178V9, multiclass
     clus
vv    ZBBX MUTATED ZBBX WILD-TYPE
  I              7             81
  II             0             33
  III            2             37
  IV             1              8
D178V10, binary
[1] "tbl2"
                cls
clus             [,1] [,2]
  ZBBX MUTATED      1    9
  ZBBX WILD-TYPE   15  147
     clus
vv    ZBBX MUTATED ZBBX WILD-TYPE
  NO             1             15
  YES            9            147
D178V11, continuous
D178V12, continuous
D178V13, multiclass
                                             clus
vv                                            ZBBX MUTATED ZBBX WILD-TYPE
  CURRENT REFORMED SMOKER FOR < OR = 15 YEARS            6             56
  CURRENT REFORMED SMOKER FOR > 15 YEARS                 3             43
  CURRENT SMOKER                                         1             27
  LIFELONG NON-SMOKER                                    0             24
D178V14, continuous

Clustering(179) Variable = OR4C12 MUTATION ANALYSIS
D179V1, survival
                  sevent
clus2               0  1
  OR4C12 MUTATED    3  1
  OR4C12 WILD-TYPE 96 49
  OR4C12 MUTATED OR4C12 WILD-TYPE 
               4              145 
  OR4C12 MUTATED OR4C12 WILD-TYPE 
               1               49 
$`OR4C12 MUTATED`
TCGA-05-4396 TCGA-05-4417 TCGA-05-4420 TCGA-73-4668 
        9.96        14.93        29.95        15.35 

$`OR4C12 WILD-TYPE`
TCGA-05-4249 TCGA-05-4250 TCGA-05-4382 TCGA-05-4384 TCGA-05-4390 TCGA-05-4397 
       38.07         3.98        19.92        14.01        37.02        24.03 
TCGA-05-4398 TCGA-05-4402 TCGA-05-4405 TCGA-05-4415 TCGA-05-4418 TCGA-05-4424 
       47.05         8.02        20.05         2.96         8.98        30.02 
TCGA-05-4426 TCGA-05-4427 TCGA-05-4430 TCGA-05-4432 TCGA-05-4433 TCGA-05-4434 
       26.01        26.01        25.02        25.02        24.00        15.02 
TCGA-05-5420 TCGA-05-5423 TCGA-05-5425 TCGA-05-5429 TCGA-05-5715 TCGA-35-3615 
        1.02         4.96         2.96         0.99         2.04         0.46 
TCGA-35-4122 TCGA-35-4123 TCGA-35-5375 TCGA-38-4625 TCGA-38-4626 TCGA-38-4627 
        7.36         5.95         8.68        47.61        85.32        37.71 
TCGA-38-4628 TCGA-38-4629 TCGA-38-4630 TCGA-38-4631 TCGA-38-4632 TCGA-38-6178 
       49.02        28.37        35.28        11.64        44.61         5.19 
TCGA-44-2655 TCGA-44-2656 TCGA-44-2657 TCGA-44-2659 TCGA-44-2661 TCGA-44-2662 
       18.87        19.10        13.15        17.39         3.39        15.78 
TCGA-44-2665 TCGA-44-2666 TCGA-44-2668 TCGA-44-3396 TCGA-44-3398 TCGA-44-3918 
       13.15         3.19         8.09        10.22         8.32         6.44 
TCGA-44-3919 TCGA-44-4112 TCGA-44-5643 TCGA-44-5645 TCGA-44-6144 TCGA-44-6145 
        6.21         4.60         3.48         6.84         0.30         3.35 
TCGA-44-6146 TCGA-44-6147 TCGA-44-6148 TCGA-44-6774 TCGA-44-6775 TCGA-44-6776 
        9.93         7.76         3.12         5.42         2.70        63.72 
TCGA-44-6777 TCGA-44-6778 TCGA-44-6779 TCGA-49-4486 TCGA-49-4487 TCGA-49-4488 
       32.45        36.49        16.41        76.21        28.11        28.57 
TCGA-49-4490 TCGA-49-4494 TCGA-49-4501 TCGA-49-4505 TCGA-49-4506 TCGA-49-4507 
       12.66        35.54        46.72        14.07        32.84         8.81 
TCGA-49-4510 TCGA-49-4512 TCGA-49-4514 TCGA-49-6742 TCGA-49-6743 TCGA-49-6744 
       29.46        29.75        43.20        15.02        12.13        12.99 
TCGA-49-6745 TCGA-50-5044 TCGA-50-5045 TCGA-50-5049 TCGA-50-5051 TCGA-50-5055 
        4.93        20.48        71.47        48.82        14.96        25.81 
TCGA-50-5066 TCGA-50-5068 TCGA-50-5072 TCGA-50-5930 TCGA-50-5931 TCGA-50-5932 
        9.76        49.28         8.05         9.27         8.78        35.87 
TCGA-50-5933 TCGA-50-5935 TCGA-50-5936 TCGA-50-5939 TCGA-50-5941 TCGA-50-5942 
       77.88        21.47         8.45        15.12         9.37         4.44 
TCGA-50-5944 TCGA-50-5946 TCGA-50-6590 TCGA-50-6591 TCGA-50-6592 TCGA-50-6593 
       12.26        11.47        42.31         3.88        25.51        11.05 
TCGA-50-6594 TCGA-50-6595 TCGA-50-6597 TCGA-55-1592 TCGA-55-1594 TCGA-55-1595 
       12.16         6.21        33.37        23.05        38.73        48.62 
TCGA-55-1596 TCGA-55-5899 TCGA-55-6543 TCGA-55-6642 TCGA-55-6712 TCGA-64-1676 
       45.17         2.86         0.07        32.61         0.79        56.81 
TCGA-64-1677 TCGA-64-1678 TCGA-64-1680 TCGA-64-5774 TCGA-64-5775 TCGA-64-5778 
       20.65        39.09        37.02        83.84         0.10        30.44 
TCGA-64-5779 TCGA-64-5781 TCGA-64-5815 TCGA-67-3770 TCGA-67-3771 TCGA-67-3772 
       16.67        39.52         7.33         0.99         1.97         0.59 
TCGA-67-3773 TCGA-67-3774 TCGA-67-6215 TCGA-67-6216 TCGA-67-6217 TCGA-71-6725 
        2.04         0.59         0.89         0.69        13.87         2.01 
TCGA-73-4658 TCGA-73-4659 TCGA-73-4662 TCGA-73-4666 TCGA-73-4670 TCGA-73-4675 
       52.57        23.38        29.95        20.28         0.46         1.32 
TCGA-73-4676 TCGA-73-4677 TCGA-91-6828 TCGA-91-6829 TCGA-91-6831 TCGA-91-6835 
        4.01         1.25         1.22        41.33         1.28         1.15 
TCGA-91-6836 
        0.36 

  OR4C12 MUTATED OR4C12 WILD-TYPE 
            9.96             0.07 
  OR4C12 MUTATED OR4C12 WILD-TYPE 
           29.95            85.32 
  OR4C12 MUTATED OR4C12 WILD-TYPE 
           15.14            13.15 
[1] "10.0 - 29.9 (15.1)" "0.1 - 85.3 (13.2)" 
      TCGA-05-4249       TCGA-05-4250       TCGA-05-4382       TCGA-05-4384 
"OR4C12 WILD-TYPE" "OR4C12 WILD-TYPE" "OR4C12 WILD-TYPE" "OR4C12 WILD-TYPE" 
      TCGA-05-4390       TCGA-05-4396       TCGA-05-4397       TCGA-05-4398 
"OR4C12 WILD-TYPE"   "OR4C12 MUTATED" "OR4C12 WILD-TYPE" "OR4C12 WILD-TYPE" 
      TCGA-05-4402       TCGA-05-4405       TCGA-05-4415       TCGA-05-4417 
"OR4C12 WILD-TYPE" "OR4C12 WILD-TYPE" "OR4C12 WILD-TYPE"   "OR4C12 MUTATED" 
      TCGA-05-4418       TCGA-05-4420       TCGA-05-4424       TCGA-05-4426 
"OR4C12 WILD-TYPE"   "OR4C12 MUTATED" "OR4C12 WILD-TYPE" "OR4C12 WILD-TYPE" 
      TCGA-05-4427       TCGA-05-4430       TCGA-05-4432       TCGA-05-4433 
"OR4C12 WILD-TYPE" "OR4C12 WILD-TYPE" "OR4C12 WILD-TYPE" "OR4C12 WILD-TYPE" 
      TCGA-05-4434       TCGA-05-5420       TCGA-05-5423       TCGA-05-5425 
"OR4C12 WILD-TYPE" "OR4C12 WILD-TYPE" "OR4C12 WILD-TYPE" "OR4C12 WILD-TYPE" 
      TCGA-05-5429       TCGA-05-5715       TCGA-35-3615       TCGA-35-4122 
"OR4C12 WILD-TYPE" "OR4C12 WILD-TYPE" "OR4C12 WILD-TYPE" "OR4C12 WILD-TYPE" 
      TCGA-35-4123       TCGA-35-5375       TCGA-38-4625       TCGA-38-4626 
"OR4C12 WILD-TYPE" "OR4C12 WILD-TYPE" "OR4C12 WILD-TYPE" "OR4C12 WILD-TYPE" 
      TCGA-38-4627       TCGA-38-4628       TCGA-38-4629       TCGA-38-4630 
"OR4C12 WILD-TYPE" "OR4C12 WILD-TYPE" "OR4C12 WILD-TYPE" "OR4C12 WILD-TYPE" 
      TCGA-38-4631       TCGA-38-4632       TCGA-38-6178       TCGA-44-2655 
"OR4C12 WILD-TYPE" "OR4C12 WILD-TYPE" "OR4C12 WILD-TYPE" "OR4C12 WILD-TYPE" 
      TCGA-44-2656       TCGA-44-2657       TCGA-44-2659       TCGA-44-2661 
"OR4C12 WILD-TYPE" "OR4C12 WILD-TYPE" "OR4C12 WILD-TYPE" "OR4C12 WILD-TYPE" 
      TCGA-44-2662       TCGA-44-2665       TCGA-44-2666       TCGA-44-2668 
"OR4C12 WILD-TYPE" "OR4C12 WILD-TYPE" "OR4C12 WILD-TYPE" "OR4C12 WILD-TYPE" 
      TCGA-44-3396       TCGA-44-3398       TCGA-44-3918       TCGA-44-3919 
"OR4C12 WILD-TYPE" "OR4C12 WILD-TYPE" "OR4C12 WILD-TYPE" "OR4C12 WILD-TYPE" 
      TCGA-44-4112       TCGA-44-5643       TCGA-44-5645       TCGA-44-6144 
"OR4C12 WILD-TYPE" "OR4C12 WILD-TYPE" "OR4C12 WILD-TYPE" "OR4C12 WILD-TYPE" 
      TCGA-44-6145       TCGA-44-6146       TCGA-44-6147       TCGA-44-6148 
"OR4C12 WILD-TYPE" "OR4C12 WILD-TYPE" "OR4C12 WILD-TYPE" "OR4C12 WILD-TYPE" 
      TCGA-44-6774       TCGA-44-6775       TCGA-44-6776       TCGA-44-6777 
"OR4C12 WILD-TYPE" "OR4C12 WILD-TYPE" "OR4C12 WILD-TYPE" "OR4C12 WILD-TYPE" 
      TCGA-44-6778       TCGA-44-6779       TCGA-49-4486       TCGA-49-4487 
"OR4C12 WILD-TYPE" "OR4C12 WILD-TYPE" "OR4C12 WILD-TYPE" "OR4C12 WILD-TYPE" 
      TCGA-49-4488       TCGA-49-4490       TCGA-49-4494       TCGA-49-4501 
"OR4C12 WILD-TYPE" "OR4C12 WILD-TYPE" "OR4C12 WILD-TYPE" "OR4C12 WILD-TYPE" 
      TCGA-49-4505       TCGA-49-4506       TCGA-49-4507       TCGA-49-4510 
"OR4C12 WILD-TYPE" "OR4C12 WILD-TYPE" "OR4C12 WILD-TYPE" "OR4C12 WILD-TYPE" 
      TCGA-49-4512       TCGA-49-4514       TCGA-49-6742       TCGA-49-6743 
"OR4C12 WILD-TYPE" "OR4C12 WILD-TYPE" "OR4C12 WILD-TYPE" "OR4C12 WILD-TYPE" 
      TCGA-49-6744       TCGA-49-6745       TCGA-50-5044       TCGA-50-5045 
"OR4C12 WILD-TYPE" "OR4C12 WILD-TYPE" "OR4C12 WILD-TYPE" "OR4C12 WILD-TYPE" 
      TCGA-50-5049       TCGA-50-5051       TCGA-50-5055       TCGA-50-5066 
"OR4C12 WILD-TYPE" "OR4C12 WILD-TYPE" "OR4C12 WILD-TYPE" "OR4C12 WILD-TYPE" 
      TCGA-50-5068       TCGA-50-5072       TCGA-50-5930       TCGA-50-5931 
"OR4C12 WILD-TYPE" "OR4C12 WILD-TYPE" "OR4C12 WILD-TYPE" "OR4C12 WILD-TYPE" 
      TCGA-50-5932       TCGA-50-5933       TCGA-50-5935       TCGA-50-5936 
"OR4C12 WILD-TYPE" "OR4C12 WILD-TYPE" "OR4C12 WILD-TYPE" "OR4C12 WILD-TYPE" 
      TCGA-50-5939       TCGA-50-5941       TCGA-50-5942       TCGA-50-5944 
"OR4C12 WILD-TYPE" "OR4C12 WILD-TYPE" "OR4C12 WILD-TYPE" "OR4C12 WILD-TYPE" 
      TCGA-50-5946       TCGA-50-6590       TCGA-50-6591       TCGA-50-6592 
"OR4C12 WILD-TYPE" "OR4C12 WILD-TYPE" "OR4C12 WILD-TYPE" "OR4C12 WILD-TYPE" 
      TCGA-50-6593       TCGA-50-6594       TCGA-50-6595       TCGA-50-6597 
"OR4C12 WILD-TYPE" "OR4C12 WILD-TYPE" "OR4C12 WILD-TYPE" "OR4C12 WILD-TYPE" 
      TCGA-55-1592       TCGA-55-1594       TCGA-55-1595       TCGA-55-1596 
"OR4C12 WILD-TYPE" "OR4C12 WILD-TYPE" "OR4C12 WILD-TYPE" "OR4C12 WILD-TYPE" 
      TCGA-55-5899       TCGA-55-6543       TCGA-55-6642       TCGA-55-6712 
"OR4C12 WILD-TYPE" "OR4C12 WILD-TYPE" "OR4C12 WILD-TYPE" "OR4C12 WILD-TYPE" 
      TCGA-64-1676       TCGA-64-1677       TCGA-64-1678       TCGA-64-1680 
"OR4C12 WILD-TYPE" "OR4C12 WILD-TYPE" "OR4C12 WILD-TYPE" "OR4C12 WILD-TYPE" 
      TCGA-64-5774       TCGA-64-5775       TCGA-64-5778       TCGA-64-5779 
"OR4C12 WILD-TYPE" "OR4C12 WILD-TYPE" "OR4C12 WILD-TYPE" "OR4C12 WILD-TYPE" 
      TCGA-64-5781       TCGA-64-5815       TCGA-67-3770       TCGA-67-3771 
"OR4C12 WILD-TYPE" "OR4C12 WILD-TYPE" "OR4C12 WILD-TYPE" "OR4C12 WILD-TYPE" 
      TCGA-67-3772       TCGA-67-3773       TCGA-67-3774       TCGA-67-6215 
"OR4C12 WILD-TYPE" "OR4C12 WILD-TYPE" "OR4C12 WILD-TYPE" "OR4C12 WILD-TYPE" 
      TCGA-67-6216       TCGA-67-6217       TCGA-71-6725       TCGA-73-4658 
"OR4C12 WILD-TYPE" "OR4C12 WILD-TYPE" "OR4C12 WILD-TYPE" "OR4C12 WILD-TYPE" 
      TCGA-73-4659       TCGA-73-4662       TCGA-73-4666       TCGA-73-4668 
"OR4C12 WILD-TYPE" "OR4C12 WILD-TYPE" "OR4C12 WILD-TYPE"   "OR4C12 MUTATED" 
      TCGA-73-4670       TCGA-73-4675       TCGA-73-4676       TCGA-73-4677 
"OR4C12 WILD-TYPE" "OR4C12 WILD-TYPE" "OR4C12 WILD-TYPE" "OR4C12 WILD-TYPE" 
      TCGA-91-6828       TCGA-91-6829       TCGA-91-6831       TCGA-91-6835 
"OR4C12 WILD-TYPE" "OR4C12 WILD-TYPE" "OR4C12 WILD-TYPE" "OR4C12 WILD-TYPE" 
      TCGA-91-6836 
"OR4C12 WILD-TYPE" 
      TCGA-05-4249       TCGA-05-4250       TCGA-05-4382       TCGA-05-4384 
"OR4C12 WILD-TYPE" "OR4C12 WILD-TYPE" "OR4C12 WILD-TYPE" "OR4C12 WILD-TYPE" 
      TCGA-05-4390       TCGA-05-4396       TCGA-05-4397       TCGA-05-4398 
"OR4C12 WILD-TYPE"   "OR4C12 MUTATED" "OR4C12 WILD-TYPE" "OR4C12 WILD-TYPE" 
      TCGA-05-4402       TCGA-05-4405       TCGA-05-4415       TCGA-05-4417 
"OR4C12 WILD-TYPE" "OR4C12 WILD-TYPE" "OR4C12 WILD-TYPE"   "OR4C12 MUTATED" 
      TCGA-05-4418       TCGA-05-4420       TCGA-05-4424       TCGA-05-4426 
"OR4C12 WILD-TYPE"   "OR4C12 MUTATED" "OR4C12 WILD-TYPE" "OR4C12 WILD-TYPE" 
      TCGA-05-4427       TCGA-05-4430       TCGA-05-4432       TCGA-05-4433 
"OR4C12 WILD-TYPE" "OR4C12 WILD-TYPE" "OR4C12 WILD-TYPE" "OR4C12 WILD-TYPE" 
      TCGA-05-4434       TCGA-05-5420       TCGA-05-5423       TCGA-05-5425 
"OR4C12 WILD-TYPE" "OR4C12 WILD-TYPE" "OR4C12 WILD-TYPE" "OR4C12 WILD-TYPE" 
      TCGA-05-5429       TCGA-05-5715       TCGA-35-3615       TCGA-35-4122 
"OR4C12 WILD-TYPE" "OR4C12 WILD-TYPE" "OR4C12 WILD-TYPE" "OR4C12 WILD-TYPE" 
      TCGA-35-4123       TCGA-35-5375       TCGA-38-4625       TCGA-38-4626 
"OR4C12 WILD-TYPE" "OR4C12 WILD-TYPE" "OR4C12 WILD-TYPE" "OR4C12 WILD-TYPE" 
      TCGA-38-4627       TCGA-38-4628       TCGA-38-4629       TCGA-38-4630 
"OR4C12 WILD-TYPE" "OR4C12 WILD-TYPE" "OR4C12 WILD-TYPE" "OR4C12 WILD-TYPE" 
      TCGA-38-4631       TCGA-38-4632       TCGA-38-6178       TCGA-44-2655 
"OR4C12 WILD-TYPE" "OR4C12 WILD-TYPE" "OR4C12 WILD-TYPE" "OR4C12 WILD-TYPE" 
      TCGA-44-2656       TCGA-44-2657       TCGA-44-2659       TCGA-44-2661 
"OR4C12 WILD-TYPE" "OR4C12 WILD-TYPE" "OR4C12 WILD-TYPE" "OR4C12 WILD-TYPE" 
      TCGA-44-2662       TCGA-44-2665       TCGA-44-2666       TCGA-44-2668 
"OR4C12 WILD-TYPE" "OR4C12 WILD-TYPE" "OR4C12 WILD-TYPE" "OR4C12 WILD-TYPE" 
      TCGA-44-3396       TCGA-44-3398       TCGA-44-3918       TCGA-44-3919 
"OR4C12 WILD-TYPE" "OR4C12 WILD-TYPE" "OR4C12 WILD-TYPE" "OR4C12 WILD-TYPE" 
      TCGA-44-4112       TCGA-44-5643       TCGA-44-5645       TCGA-44-6144 
"OR4C12 WILD-TYPE" "OR4C12 WILD-TYPE" "OR4C12 WILD-TYPE" "OR4C12 WILD-TYPE" 
      TCGA-44-6145       TCGA-44-6146       TCGA-44-6147       TCGA-44-6148 
"OR4C12 WILD-TYPE" "OR4C12 WILD-TYPE" "OR4C12 WILD-TYPE" "OR4C12 WILD-TYPE" 
      TCGA-44-6774       TCGA-44-6775       TCGA-44-6776       TCGA-44-6777 
"OR4C12 WILD-TYPE" "OR4C12 WILD-TYPE" "OR4C12 WILD-TYPE" "OR4C12 WILD-TYPE" 
      TCGA-44-6778       TCGA-44-6779       TCGA-49-4486       TCGA-49-4487 
"OR4C12 WILD-TYPE" "OR4C12 WILD-TYPE" "OR4C12 WILD-TYPE" "OR4C12 WILD-TYPE" 
      TCGA-49-4488       TCGA-49-4490       TCGA-49-4494       TCGA-49-4501 
"OR4C12 WILD-TYPE" "OR4C12 WILD-TYPE" "OR4C12 WILD-TYPE" "OR4C12 WILD-TYPE" 
      TCGA-49-4505       TCGA-49-4506       TCGA-49-4507       TCGA-49-4510 
"OR4C12 WILD-TYPE" "OR4C12 WILD-TYPE" "OR4C12 WILD-TYPE" "OR4C12 WILD-TYPE" 
      TCGA-49-4512       TCGA-49-4514       TCGA-49-6742       TCGA-49-6743 
"OR4C12 WILD-TYPE" "OR4C12 WILD-TYPE" "OR4C12 WILD-TYPE" "OR4C12 WILD-TYPE" 
      TCGA-49-6744       TCGA-49-6745       TCGA-50-5044       TCGA-50-5045 
"OR4C12 WILD-TYPE" "OR4C12 WILD-TYPE" "OR4C12 WILD-TYPE" "OR4C12 WILD-TYPE" 
      TCGA-50-5049       TCGA-50-5051       TCGA-50-5055       TCGA-50-5066 
"OR4C12 WILD-TYPE" "OR4C12 WILD-TYPE" "OR4C12 WILD-TYPE" "OR4C12 WILD-TYPE" 
      TCGA-50-5068       TCGA-50-5072       TCGA-50-5930       TCGA-50-5931 
"OR4C12 WILD-TYPE" "OR4C12 WILD-TYPE" "OR4C12 WILD-TYPE" "OR4C12 WILD-TYPE" 
      TCGA-50-5932       TCGA-50-5933       TCGA-50-5935       TCGA-50-5936 
"OR4C12 WILD-TYPE" "OR4C12 WILD-TYPE" "OR4C12 WILD-TYPE" "OR4C12 WILD-TYPE" 
      TCGA-50-5939       TCGA-50-5941       TCGA-50-5942       TCGA-50-5944 
"OR4C12 WILD-TYPE" "OR4C12 WILD-TYPE" "OR4C12 WILD-TYPE" "OR4C12 WILD-TYPE" 
      TCGA-50-5946       TCGA-50-6590       TCGA-50-6591       TCGA-50-6592 
"OR4C12 WILD-TYPE" "OR4C12 WILD-TYPE" "OR4C12 WILD-TYPE" "OR4C12 WILD-TYPE" 
      TCGA-50-6593       TCGA-50-6594       TCGA-50-6595       TCGA-50-6597 
"OR4C12 WILD-TYPE" "OR4C12 WILD-TYPE" "OR4C12 WILD-TYPE" "OR4C12 WILD-TYPE" 
      TCGA-55-1592       TCGA-55-1594       TCGA-55-1595       TCGA-55-1596 
"OR4C12 WILD-TYPE" "OR4C12 WILD-TYPE" "OR4C12 WILD-TYPE" "OR4C12 WILD-TYPE" 
      TCGA-55-5899       TCGA-55-6543       TCGA-55-6642       TCGA-55-6712 
"OR4C12 WILD-TYPE" "OR4C12 WILD-TYPE" "OR4C12 WILD-TYPE" "OR4C12 WILD-TYPE" 
      TCGA-64-1676       TCGA-64-1677       TCGA-64-1678       TCGA-64-1680 
"OR4C12 WILD-TYPE" "OR4C12 WILD-TYPE" "OR4C12 WILD-TYPE" "OR4C12 WILD-TYPE" 
      TCGA-64-5774       TCGA-64-5775       TCGA-64-5778       TCGA-64-5779 
"OR4C12 WILD-TYPE" "OR4C12 WILD-TYPE" "OR4C12 WILD-TYPE" "OR4C12 WILD-TYPE" 
      TCGA-64-5781       TCGA-64-5815       TCGA-67-3770       TCGA-67-3771 
"OR4C12 WILD-TYPE" "OR4C12 WILD-TYPE" "OR4C12 WILD-TYPE" "OR4C12 WILD-TYPE" 
      TCGA-67-3772       TCGA-67-3773       TCGA-67-3774       TCGA-67-6215 
"OR4C12 WILD-TYPE" "OR4C12 WILD-TYPE" "OR4C12 WILD-TYPE" "OR4C12 WILD-TYPE" 
      TCGA-67-6216       TCGA-67-6217       TCGA-71-6725       TCGA-73-4658 
"OR4C12 WILD-TYPE" "OR4C12 WILD-TYPE" "OR4C12 WILD-TYPE" "OR4C12 WILD-TYPE" 
      TCGA-73-4659       TCGA-73-4662       TCGA-73-4666       TCGA-73-4668 
"OR4C12 WILD-TYPE" "OR4C12 WILD-TYPE" "OR4C12 WILD-TYPE"   "OR4C12 MUTATED" 
      TCGA-73-4670       TCGA-73-4675       TCGA-73-4676       TCGA-73-4677 
"OR4C12 WILD-TYPE" "OR4C12 WILD-TYPE" "OR4C12 WILD-TYPE" "OR4C12 WILD-TYPE" 
      TCGA-91-6828       TCGA-91-6829       TCGA-91-6831       TCGA-91-6835 
"OR4C12 WILD-TYPE" "OR4C12 WILD-TYPE" "OR4C12 WILD-TYPE" "OR4C12 WILD-TYPE" 
      TCGA-91-6836 
"OR4C12 WILD-TYPE" 
      TCGA-05-4249       TCGA-05-4250       TCGA-05-4382       TCGA-05-4384 
"OR4C12 WILD-TYPE" "OR4C12 WILD-TYPE" "OR4C12 WILD-TYPE" "OR4C12 WILD-TYPE" 
      TCGA-05-4390       TCGA-05-4396       TCGA-05-4397       TCGA-05-4398 
"OR4C12 WILD-TYPE"   "OR4C12 MUTATED" "OR4C12 WILD-TYPE" "OR4C12 WILD-TYPE" 
      TCGA-05-4402       TCGA-05-4405       TCGA-05-4415       TCGA-05-4417 
"OR4C12 WILD-TYPE" "OR4C12 WILD-TYPE" "OR4C12 WILD-TYPE"   "OR4C12 MUTATED" 
      TCGA-05-4418       TCGA-05-4420       TCGA-05-4424       TCGA-05-4426 
"OR4C12 WILD-TYPE"   "OR4C12 MUTATED" "OR4C12 WILD-TYPE" "OR4C12 WILD-TYPE" 
      TCGA-05-4427       TCGA-05-4430       TCGA-05-4432       TCGA-05-4433 
"OR4C12 WILD-TYPE" "OR4C12 WILD-TYPE" "OR4C12 WILD-TYPE" "OR4C12 WILD-TYPE" 
      TCGA-05-4434       TCGA-05-5420       TCGA-05-5423       TCGA-05-5425 
"OR4C12 WILD-TYPE" "OR4C12 WILD-TYPE" "OR4C12 WILD-TYPE" "OR4C12 WILD-TYPE" 
      TCGA-05-5429       TCGA-05-5715       TCGA-35-3615       TCGA-35-4122 
"OR4C12 WILD-TYPE" "OR4C12 WILD-TYPE" "OR4C12 WILD-TYPE" "OR4C12 WILD-TYPE" 
      TCGA-35-4123       TCGA-35-5375       TCGA-38-4625       TCGA-38-4626 
"OR4C12 WILD-TYPE" "OR4C12 WILD-TYPE" "OR4C12 WILD-TYPE" "OR4C12 WILD-TYPE" 
      TCGA-38-4627       TCGA-38-4628       TCGA-38-4629       TCGA-38-4630 
"OR4C12 WILD-TYPE" "OR4C12 WILD-TYPE" "OR4C12 WILD-TYPE" "OR4C12 WILD-TYPE" 
      TCGA-38-4631       TCGA-38-4632       TCGA-38-6178       TCGA-44-2655 
"OR4C12 WILD-TYPE" "OR4C12 WILD-TYPE" "OR4C12 WILD-TYPE" "OR4C12 WILD-TYPE" 
      TCGA-44-2656       TCGA-44-2657       TCGA-44-2659       TCGA-44-2661 
"OR4C12 WILD-TYPE" "OR4C12 WILD-TYPE" "OR4C12 WILD-TYPE" "OR4C12 WILD-TYPE" 
      TCGA-44-2662       TCGA-44-2665       TCGA-44-2666       TCGA-44-2668 
"OR4C12 WILD-TYPE" "OR4C12 WILD-TYPE" "OR4C12 WILD-TYPE" "OR4C12 WILD-TYPE" 
      TCGA-44-3396       TCGA-44-3398       TCGA-44-3918       TCGA-44-3919 
"OR4C12 WILD-TYPE" "OR4C12 WILD-TYPE" "OR4C12 WILD-TYPE" "OR4C12 WILD-TYPE" 
      TCGA-44-4112       TCGA-44-5643       TCGA-44-5645       TCGA-44-6144 
"OR4C12 WILD-TYPE" "OR4C12 WILD-TYPE" "OR4C12 WILD-TYPE" "OR4C12 WILD-TYPE" 
      TCGA-44-6145       TCGA-44-6146       TCGA-44-6147       TCGA-44-6148 
"OR4C12 WILD-TYPE" "OR4C12 WILD-TYPE" "OR4C12 WILD-TYPE" "OR4C12 WILD-TYPE" 
      TCGA-44-6774       TCGA-44-6775       TCGA-44-6776       TCGA-44-6777 
"OR4C12 WILD-TYPE" "OR4C12 WILD-TYPE" "OR4C12 WILD-TYPE" "OR4C12 WILD-TYPE" 
      TCGA-44-6778       TCGA-44-6779       TCGA-49-4486       TCGA-49-4487 
"OR4C12 WILD-TYPE" "OR4C12 WILD-TYPE" "OR4C12 WILD-TYPE" "OR4C12 WILD-TYPE" 
      TCGA-49-4488       TCGA-49-4490       TCGA-49-4494       TCGA-49-4501 
"OR4C12 WILD-TYPE" "OR4C12 WILD-TYPE" "OR4C12 WILD-TYPE" "OR4C12 WILD-TYPE" 
      TCGA-49-4505       TCGA-49-4506       TCGA-49-4507       TCGA-49-4510 
"OR4C12 WILD-TYPE" "OR4C12 WILD-TYPE" "OR4C12 WILD-TYPE" "OR4C12 WILD-TYPE" 
      TCGA-49-4512       TCGA-49-4514       TCGA-49-6742       TCGA-49-6743 
"OR4C12 WILD-TYPE" "OR4C12 WILD-TYPE" "OR4C12 WILD-TYPE" "OR4C12 WILD-TYPE" 
      TCGA-49-6744       TCGA-49-6745       TCGA-50-5044       TCGA-50-5045 
"OR4C12 WILD-TYPE" "OR4C12 WILD-TYPE" "OR4C12 WILD-TYPE" "OR4C12 WILD-TYPE" 
      TCGA-50-5049       TCGA-50-5051       TCGA-50-5055       TCGA-50-5066 
"OR4C12 WILD-TYPE" "OR4C12 WILD-TYPE" "OR4C12 WILD-TYPE" "OR4C12 WILD-TYPE" 
      TCGA-50-5068       TCGA-50-5072       TCGA-50-5930       TCGA-50-5931 
"OR4C12 WILD-TYPE" "OR4C12 WILD-TYPE" "OR4C12 WILD-TYPE" "OR4C12 WILD-TYPE" 
      TCGA-50-5932       TCGA-50-5933       TCGA-50-5935       TCGA-50-5936 
"OR4C12 WILD-TYPE" "OR4C12 WILD-TYPE" "OR4C12 WILD-TYPE" "OR4C12 WILD-TYPE" 
      TCGA-50-5939       TCGA-50-5941       TCGA-50-5942       TCGA-50-5944 
"OR4C12 WILD-TYPE" "OR4C12 WILD-TYPE" "OR4C12 WILD-TYPE" "OR4C12 WILD-TYPE" 
      TCGA-50-5946       TCGA-50-6590       TCGA-50-6591       TCGA-50-6592 
"OR4C12 WILD-TYPE" "OR4C12 WILD-TYPE" "OR4C12 WILD-TYPE" "OR4C12 WILD-TYPE" 
      TCGA-50-6593       TCGA-50-6594       TCGA-50-6595       TCGA-50-6597 
"OR4C12 WILD-TYPE" "OR4C12 WILD-TYPE" "OR4C12 WILD-TYPE" "OR4C12 WILD-TYPE" 
      TCGA-55-1592       TCGA-55-1594       TCGA-55-1595       TCGA-55-1596 
"OR4C12 WILD-TYPE" "OR4C12 WILD-TYPE" "OR4C12 WILD-TYPE" "OR4C12 WILD-TYPE" 
      TCGA-55-5899       TCGA-55-6543       TCGA-55-6642       TCGA-55-6712 
"OR4C12 WILD-TYPE" "OR4C12 WILD-TYPE" "OR4C12 WILD-TYPE" "OR4C12 WILD-TYPE" 
      TCGA-64-1676       TCGA-64-1677       TCGA-64-1678       TCGA-64-1680 
"OR4C12 WILD-TYPE" "OR4C12 WILD-TYPE" "OR4C12 WILD-TYPE" "OR4C12 WILD-TYPE" 
      TCGA-64-5774       TCGA-64-5775       TCGA-64-5778       TCGA-64-5779 
"OR4C12 WILD-TYPE" "OR4C12 WILD-TYPE" "OR4C12 WILD-TYPE" "OR4C12 WILD-TYPE" 
      TCGA-64-5781       TCGA-64-5815       TCGA-67-3770       TCGA-67-3771 
"OR4C12 WILD-TYPE" "OR4C12 WILD-TYPE" "OR4C12 WILD-TYPE" "OR4C12 WILD-TYPE" 
      TCGA-67-3772       TCGA-67-3773       TCGA-67-3774       TCGA-67-6215 
"OR4C12 WILD-TYPE" "OR4C12 WILD-TYPE" "OR4C12 WILD-TYPE" "OR4C12 WILD-TYPE" 
      TCGA-67-6216       TCGA-67-6217       TCGA-71-6725       TCGA-73-4658 
"OR4C12 WILD-TYPE" "OR4C12 WILD-TYPE" "OR4C12 WILD-TYPE" "OR4C12 WILD-TYPE" 
      TCGA-73-4659       TCGA-73-4662       TCGA-73-4666       TCGA-73-4668 
"OR4C12 WILD-TYPE" "OR4C12 WILD-TYPE" "OR4C12 WILD-TYPE"   "OR4C12 MUTATED" 
      TCGA-73-4670       TCGA-73-4675       TCGA-73-4676       TCGA-73-4677 
"OR4C12 WILD-TYPE" "OR4C12 WILD-TYPE" "OR4C12 WILD-TYPE" "OR4C12 WILD-TYPE" 
      TCGA-91-6828       TCGA-91-6829       TCGA-91-6831       TCGA-91-6835 
"OR4C12 WILD-TYPE" "OR4C12 WILD-TYPE" "OR4C12 WILD-TYPE" "OR4C12 WILD-TYPE" 
      TCGA-91-6836 
"OR4C12 WILD-TYPE" 
[1] "hr=" "1"  
D179V2, continuous
D179V3, binary
[1] "tbl2"
                  cls
clus               [,1] [,2]
  OR4C12 MUTATED      2    3
  OR4C12 WILD-TYPE   91   76
        clus
vv       OR4C12 MUTATED OR4C12 WILD-TYPE
  FEMALE              2               91
  MALE                3               76
D179V4, continuous
[1] "Remove cluster labels:" "OR4C12 MUTATED"        
clus
  OR4C12 MUTATED OR4C12 WILD-TYPE 
               1               11 
      TCGA-35-4122       TCGA-35-4123       TCGA-35-5375       TCGA-64-1677 
"OR4C12 WILD-TYPE" "OR4C12 WILD-TYPE" "OR4C12 WILD-TYPE" "OR4C12 WILD-TYPE" 
      TCGA-64-5778       TCGA-71-6725       TCGA-73-4659       TCGA-73-4662 
"OR4C12 WILD-TYPE" "OR4C12 WILD-TYPE" "OR4C12 WILD-TYPE" "OR4C12 WILD-TYPE" 
      TCGA-73-4666       TCGA-73-4676       TCGA-75-5122 
"OR4C12 WILD-TYPE" "OR4C12 WILD-TYPE" "OR4C12 WILD-TYPE" 
D179V5, multiclass
D179V6, multiclass
    clus
vv   OR4C12 MUTATED OR4C12 WILD-TYPE
  T1              0               41
  T2              4              104
  T3              0               14
  T4              1                7
D179V7, multiclass
       clus
vv      OR4C12 MUTATED OR4C12 WILD-TYPE
  N0                 2               93
  N1                 3               34
  N2+N3              0               35
D179V8, multiclass
    clus
vv   OR4C12 MUTATED OR4C12 WILD-TYPE
  M0              5              132
  M1              0                9
  MX              0               22
D179V9, multiclass
     clus
vv    OR4C12 MUTATED OR4C12 WILD-TYPE
  I                2               86
  II               2               31
  III              1               38
  IV               0                9
D179V10, binary
[1] "tbl2"
                  cls
clus               [,1] [,2]
  OR4C12 MUTATED      0    5
  OR4C12 WILD-TYPE   16  151
     clus
vv    OR4C12 MUTATED OR4C12 WILD-TYPE
  NO               0               16
  YES              5              151
D179V11, continuous
D179V12, continuous
D179V13, multiclass
                                             clus
vv                                            OR4C12 MUTATED OR4C12 WILD-TYPE
  CURRENT REFORMED SMOKER FOR < OR = 15 YEARS              2               60
  CURRENT REFORMED SMOKER FOR > 15 YEARS                   2               44
  CURRENT SMOKER                                           1               27
  LIFELONG NON-SMOKER                                      0               24
D179V14, continuous

Clustering(180) Variable = CNGA2 MUTATION ANALYSIS
D180V1, survival
                 sevent
clus2              0  1
  CNGA2 MUTATED    6  3
  CNGA2 WILD-TYPE 93 47
  CNGA2 MUTATED CNGA2 WILD-TYPE 
              9             140 
  CNGA2 MUTATED CNGA2 WILD-TYPE 
              3              47 
$`CNGA2 MUTATED`
TCGA-05-4396 TCGA-05-4420 TCGA-05-4427 TCGA-05-4430 TCGA-49-6742 TCGA-50-5045 
        9.96        29.95        26.01        25.02        15.02        71.47 
TCGA-55-1592 TCGA-64-1676 TCGA-67-3771 
       23.05        56.81         1.97 

$`CNGA2 WILD-TYPE`
TCGA-05-4249 TCGA-05-4250 TCGA-05-4382 TCGA-05-4384 TCGA-05-4390 TCGA-05-4397 
       38.07         3.98        19.92        14.01        37.02        24.03 
TCGA-05-4398 TCGA-05-4402 TCGA-05-4405 TCGA-05-4415 TCGA-05-4417 TCGA-05-4418 
       47.05         8.02        20.05         2.96        14.93         8.98 
TCGA-05-4424 TCGA-05-4426 TCGA-05-4432 TCGA-05-4433 TCGA-05-4434 TCGA-05-5420 
       30.02        26.01        25.02        24.00        15.02         1.02 
TCGA-05-5423 TCGA-05-5425 TCGA-05-5429 TCGA-05-5715 TCGA-35-3615 TCGA-35-4122 
        4.96         2.96         0.99         2.04         0.46         7.36 
TCGA-35-4123 TCGA-35-5375 TCGA-38-4625 TCGA-38-4626 TCGA-38-4627 TCGA-38-4628 
        5.95         8.68        47.61        85.32        37.71        49.02 
TCGA-38-4629 TCGA-38-4630 TCGA-38-4631 TCGA-38-4632 TCGA-38-6178 TCGA-44-2655 
       28.37        35.28        11.64        44.61         5.19        18.87 
TCGA-44-2656 TCGA-44-2657 TCGA-44-2659 TCGA-44-2661 TCGA-44-2662 TCGA-44-2665 
       19.10        13.15        17.39         3.39        15.78        13.15 
TCGA-44-2666 TCGA-44-2668 TCGA-44-3396 TCGA-44-3398 TCGA-44-3918 TCGA-44-3919 
        3.19         8.09        10.22         8.32         6.44         6.21 
TCGA-44-4112 TCGA-44-5643 TCGA-44-5645 TCGA-44-6144 TCGA-44-6145 TCGA-44-6146 
        4.60         3.48         6.84         0.30         3.35         9.93 
TCGA-44-6147 TCGA-44-6148 TCGA-44-6774 TCGA-44-6775 TCGA-44-6776 TCGA-44-6777 
        7.76         3.12         5.42         2.70        63.72        32.45 
TCGA-44-6778 TCGA-44-6779 TCGA-49-4486 TCGA-49-4487 TCGA-49-4488 TCGA-49-4490 
       36.49        16.41        76.21        28.11        28.57        12.66 
TCGA-49-4494 TCGA-49-4501 TCGA-49-4505 TCGA-49-4506 TCGA-49-4507 TCGA-49-4510 
       35.54        46.72        14.07        32.84         8.81        29.46 
TCGA-49-4512 TCGA-49-4514 TCGA-49-6743 TCGA-49-6744 TCGA-49-6745 TCGA-50-5044 
       29.75        43.20        12.13        12.99         4.93        20.48 
TCGA-50-5049 TCGA-50-5051 TCGA-50-5055 TCGA-50-5066 TCGA-50-5068 TCGA-50-5072 
       48.82        14.96        25.81         9.76        49.28         8.05 
TCGA-50-5930 TCGA-50-5931 TCGA-50-5932 TCGA-50-5933 TCGA-50-5935 TCGA-50-5936 
        9.27         8.78        35.87        77.88        21.47         8.45 
TCGA-50-5939 TCGA-50-5941 TCGA-50-5942 TCGA-50-5944 TCGA-50-5946 TCGA-50-6590 
       15.12         9.37         4.44        12.26        11.47        42.31 
TCGA-50-6591 TCGA-50-6592 TCGA-50-6593 TCGA-50-6594 TCGA-50-6595 TCGA-50-6597 
        3.88        25.51        11.05        12.16         6.21        33.37 
TCGA-55-1594 TCGA-55-1595 TCGA-55-1596 TCGA-55-5899 TCGA-55-6543 TCGA-55-6642 
       38.73        48.62        45.17         2.86         0.07        32.61 
TCGA-55-6712 TCGA-64-1677 TCGA-64-1678 TCGA-64-1680 TCGA-64-5774 TCGA-64-5775 
        0.79        20.65        39.09        37.02        83.84         0.10 
TCGA-64-5778 TCGA-64-5779 TCGA-64-5781 TCGA-64-5815 TCGA-67-3770 TCGA-67-3772 
       30.44        16.67        39.52         7.33         0.99         0.59 
TCGA-67-3773 TCGA-67-3774 TCGA-67-6215 TCGA-67-6216 TCGA-67-6217 TCGA-71-6725 
        2.04         0.59         0.89         0.69        13.87         2.01 
TCGA-73-4658 TCGA-73-4659 TCGA-73-4662 TCGA-73-4666 TCGA-73-4668 TCGA-73-4670 
       52.57        23.38        29.95        20.28        15.35         0.46 
TCGA-73-4675 TCGA-73-4676 TCGA-73-4677 TCGA-91-6828 TCGA-91-6829 TCGA-91-6831 
        1.32         4.01         1.25         1.22        41.33         1.28 
TCGA-91-6835 TCGA-91-6836 
        1.15         0.36 

  CNGA2 MUTATED CNGA2 WILD-TYPE 
           1.97            0.07 
  CNGA2 MUTATED CNGA2 WILD-TYPE 
          71.47           85.32 
  CNGA2 MUTATED CNGA2 WILD-TYPE 
          25.02           13.07 
[1] "2.0 - 71.5 (25.0)" "0.1 - 85.3 (13.1)"
     TCGA-05-4249      TCGA-05-4250      TCGA-05-4382      TCGA-05-4384 
"CNGA2 WILD-TYPE" "CNGA2 WILD-TYPE" "CNGA2 WILD-TYPE" "CNGA2 WILD-TYPE" 
     TCGA-05-4390      TCGA-05-4396      TCGA-05-4397      TCGA-05-4398 
"CNGA2 WILD-TYPE"   "CNGA2 MUTATED" "CNGA2 WILD-TYPE" "CNGA2 WILD-TYPE" 
     TCGA-05-4402      TCGA-05-4405      TCGA-05-4415      TCGA-05-4417 
"CNGA2 WILD-TYPE" "CNGA2 WILD-TYPE" "CNGA2 WILD-TYPE" "CNGA2 WILD-TYPE" 
     TCGA-05-4418      TCGA-05-4420      TCGA-05-4424      TCGA-05-4426 
"CNGA2 WILD-TYPE"   "CNGA2 MUTATED" "CNGA2 WILD-TYPE" "CNGA2 WILD-TYPE" 
     TCGA-05-4427      TCGA-05-4430      TCGA-05-4432      TCGA-05-4433 
  "CNGA2 MUTATED"   "CNGA2 MUTATED" "CNGA2 WILD-TYPE" "CNGA2 WILD-TYPE" 
     TCGA-05-4434      TCGA-05-5420      TCGA-05-5423      TCGA-05-5425 
"CNGA2 WILD-TYPE" "CNGA2 WILD-TYPE" "CNGA2 WILD-TYPE" "CNGA2 WILD-TYPE" 
     TCGA-05-5429      TCGA-05-5715      TCGA-35-3615      TCGA-35-4122 
"CNGA2 WILD-TYPE" "CNGA2 WILD-TYPE" "CNGA2 WILD-TYPE" "CNGA2 WILD-TYPE" 
     TCGA-35-4123      TCGA-35-5375      TCGA-38-4625      TCGA-38-4626 
"CNGA2 WILD-TYPE" "CNGA2 WILD-TYPE" "CNGA2 WILD-TYPE" "CNGA2 WILD-TYPE" 
     TCGA-38-4627      TCGA-38-4628      TCGA-38-4629      TCGA-38-4630 
"CNGA2 WILD-TYPE" "CNGA2 WILD-TYPE" "CNGA2 WILD-TYPE" "CNGA2 WILD-TYPE" 
     TCGA-38-4631      TCGA-38-4632      TCGA-38-6178      TCGA-44-2655 
"CNGA2 WILD-TYPE" "CNGA2 WILD-TYPE" "CNGA2 WILD-TYPE" "CNGA2 WILD-TYPE" 
     TCGA-44-2656      TCGA-44-2657      TCGA-44-2659      TCGA-44-2661 
"CNGA2 WILD-TYPE" "CNGA2 WILD-TYPE" "CNGA2 WILD-TYPE" "CNGA2 WILD-TYPE" 
     TCGA-44-2662      TCGA-44-2665      TCGA-44-2666      TCGA-44-2668 
"CNGA2 WILD-TYPE" "CNGA2 WILD-TYPE" "CNGA2 WILD-TYPE" "CNGA2 WILD-TYPE" 
     TCGA-44-3396      TCGA-44-3398      TCGA-44-3918      TCGA-44-3919 
"CNGA2 WILD-TYPE" "CNGA2 WILD-TYPE" "CNGA2 WILD-TYPE" "CNGA2 WILD-TYPE" 
     TCGA-44-4112      TCGA-44-5643      TCGA-44-5645      TCGA-44-6144 
"CNGA2 WILD-TYPE" "CNGA2 WILD-TYPE" "CNGA2 WILD-TYPE" "CNGA2 WILD-TYPE" 
     TCGA-44-6145      TCGA-44-6146      TCGA-44-6147      TCGA-44-6148 
"CNGA2 WILD-TYPE" "CNGA2 WILD-TYPE" "CNGA2 WILD-TYPE" "CNGA2 WILD-TYPE" 
     TCGA-44-6774      TCGA-44-6775      TCGA-44-6776      TCGA-44-6777 
"CNGA2 WILD-TYPE" "CNGA2 WILD-TYPE" "CNGA2 WILD-TYPE" "CNGA2 WILD-TYPE" 
     TCGA-44-6778      TCGA-44-6779      TCGA-49-4486      TCGA-49-4487 
"CNGA2 WILD-TYPE" "CNGA2 WILD-TYPE" "CNGA2 WILD-TYPE" "CNGA2 WILD-TYPE" 
     TCGA-49-4488      TCGA-49-4490      TCGA-49-4494      TCGA-49-4501 
"CNGA2 WILD-TYPE" "CNGA2 WILD-TYPE" "CNGA2 WILD-TYPE" "CNGA2 WILD-TYPE" 
     TCGA-49-4505      TCGA-49-4506      TCGA-49-4507      TCGA-49-4510 
"CNGA2 WILD-TYPE" "CNGA2 WILD-TYPE" "CNGA2 WILD-TYPE" "CNGA2 WILD-TYPE" 
     TCGA-49-4512      TCGA-49-4514      TCGA-49-6742      TCGA-49-6743 
"CNGA2 WILD-TYPE" "CNGA2 WILD-TYPE"   "CNGA2 MUTATED" "CNGA2 WILD-TYPE" 
     TCGA-49-6744      TCGA-49-6745      TCGA-50-5044      TCGA-50-5045 
"CNGA2 WILD-TYPE" "CNGA2 WILD-TYPE" "CNGA2 WILD-TYPE"   "CNGA2 MUTATED" 
     TCGA-50-5049      TCGA-50-5051      TCGA-50-5055      TCGA-50-5066 
"CNGA2 WILD-TYPE" "CNGA2 WILD-TYPE" "CNGA2 WILD-TYPE" "CNGA2 WILD-TYPE" 
     TCGA-50-5068      TCGA-50-5072      TCGA-50-5930      TCGA-50-5931 
"CNGA2 WILD-TYPE" "CNGA2 WILD-TYPE" "CNGA2 WILD-TYPE" "CNGA2 WILD-TYPE" 
     TCGA-50-5932      TCGA-50-5933      TCGA-50-5935      TCGA-50-5936 
"CNGA2 WILD-TYPE" "CNGA2 WILD-TYPE" "CNGA2 WILD-TYPE" "CNGA2 WILD-TYPE" 
     TCGA-50-5939      TCGA-50-5941      TCGA-50-5942      TCGA-50-5944 
"CNGA2 WILD-TYPE" "CNGA2 WILD-TYPE" "CNGA2 WILD-TYPE" "CNGA2 WILD-TYPE" 
     TCGA-50-5946      TCGA-50-6590      TCGA-50-6591      TCGA-50-6592 
"CNGA2 WILD-TYPE" "CNGA2 WILD-TYPE" "CNGA2 WILD-TYPE" "CNGA2 WILD-TYPE" 
     TCGA-50-6593      TCGA-50-6594      TCGA-50-6595      TCGA-50-6597 
"CNGA2 WILD-TYPE" "CNGA2 WILD-TYPE" "CNGA2 WILD-TYPE" "CNGA2 WILD-TYPE" 
     TCGA-55-1592      TCGA-55-1594      TCGA-55-1595      TCGA-55-1596 
  "CNGA2 MUTATED" "CNGA2 WILD-TYPE" "CNGA2 WILD-TYPE" "CNGA2 WILD-TYPE" 
     TCGA-55-5899      TCGA-55-6543      TCGA-55-6642      TCGA-55-6712 
"CNGA2 WILD-TYPE" "CNGA2 WILD-TYPE" "CNGA2 WILD-TYPE" "CNGA2 WILD-TYPE" 
     TCGA-64-1676      TCGA-64-1677      TCGA-64-1678      TCGA-64-1680 
  "CNGA2 MUTATED" "CNGA2 WILD-TYPE" "CNGA2 WILD-TYPE" "CNGA2 WILD-TYPE" 
     TCGA-64-5774      TCGA-64-5775      TCGA-64-5778      TCGA-64-5779 
"CNGA2 WILD-TYPE" "CNGA2 WILD-TYPE" "CNGA2 WILD-TYPE" "CNGA2 WILD-TYPE" 
     TCGA-64-5781      TCGA-64-5815      TCGA-67-3770      TCGA-67-3771 
"CNGA2 WILD-TYPE" "CNGA2 WILD-TYPE" "CNGA2 WILD-TYPE"   "CNGA2 MUTATED" 
     TCGA-67-3772      TCGA-67-3773      TCGA-67-3774      TCGA-67-6215 
"CNGA2 WILD-TYPE" "CNGA2 WILD-TYPE" "CNGA2 WILD-TYPE" "CNGA2 WILD-TYPE" 
     TCGA-67-6216      TCGA-67-6217      TCGA-71-6725      TCGA-73-4658 
"CNGA2 WILD-TYPE" "CNGA2 WILD-TYPE" "CNGA2 WILD-TYPE" "CNGA2 WILD-TYPE" 
     TCGA-73-4659      TCGA-73-4662      TCGA-73-4666      TCGA-73-4668 
"CNGA2 WILD-TYPE" "CNGA2 WILD-TYPE" "CNGA2 WILD-TYPE" "CNGA2 WILD-TYPE" 
     TCGA-73-4670      TCGA-73-4675      TCGA-73-4676      TCGA-73-4677 
"CNGA2 WILD-TYPE" "CNGA2 WILD-TYPE" "CNGA2 WILD-TYPE" "CNGA2 WILD-TYPE" 
     TCGA-91-6828      TCGA-91-6829      TCGA-91-6831      TCGA-91-6835 
"CNGA2 WILD-TYPE" "CNGA2 WILD-TYPE" "CNGA2 WILD-TYPE" "CNGA2 WILD-TYPE" 
     TCGA-91-6836 
"CNGA2 WILD-TYPE" 
     TCGA-05-4249      TCGA-05-4250      TCGA-05-4382      TCGA-05-4384 
"CNGA2 WILD-TYPE" "CNGA2 WILD-TYPE" "CNGA2 WILD-TYPE" "CNGA2 WILD-TYPE" 
     TCGA-05-4390      TCGA-05-4396      TCGA-05-4397      TCGA-05-4398 
"CNGA2 WILD-TYPE"   "CNGA2 MUTATED" "CNGA2 WILD-TYPE" "CNGA2 WILD-TYPE" 
     TCGA-05-4402      TCGA-05-4405      TCGA-05-4415      TCGA-05-4417 
"CNGA2 WILD-TYPE" "CNGA2 WILD-TYPE" "CNGA2 WILD-TYPE" "CNGA2 WILD-TYPE" 
     TCGA-05-4418      TCGA-05-4420      TCGA-05-4424      TCGA-05-4426 
"CNGA2 WILD-TYPE"   "CNGA2 MUTATED" "CNGA2 WILD-TYPE" "CNGA2 WILD-TYPE" 
     TCGA-05-4427      TCGA-05-4430      TCGA-05-4432      TCGA-05-4433 
  "CNGA2 MUTATED"   "CNGA2 MUTATED" "CNGA2 WILD-TYPE" "CNGA2 WILD-TYPE" 
     TCGA-05-4434      TCGA-05-5420      TCGA-05-5423      TCGA-05-5425 
"CNGA2 WILD-TYPE" "CNGA2 WILD-TYPE" "CNGA2 WILD-TYPE" "CNGA2 WILD-TYPE" 
     TCGA-05-5429      TCGA-05-5715      TCGA-35-3615      TCGA-35-4122 
"CNGA2 WILD-TYPE" "CNGA2 WILD-TYPE" "CNGA2 WILD-TYPE" "CNGA2 WILD-TYPE" 
     TCGA-35-4123      TCGA-35-5375      TCGA-38-4625      TCGA-38-4626 
"CNGA2 WILD-TYPE" "CNGA2 WILD-TYPE" "CNGA2 WILD-TYPE" "CNGA2 WILD-TYPE" 
     TCGA-38-4627      TCGA-38-4628      TCGA-38-4629      TCGA-38-4630 
"CNGA2 WILD-TYPE" "CNGA2 WILD-TYPE" "CNGA2 WILD-TYPE" "CNGA2 WILD-TYPE" 
     TCGA-38-4631      TCGA-38-4632      TCGA-38-6178      TCGA-44-2655 
"CNGA2 WILD-TYPE" "CNGA2 WILD-TYPE" "CNGA2 WILD-TYPE" "CNGA2 WILD-TYPE" 
     TCGA-44-2656      TCGA-44-2657      TCGA-44-2659      TCGA-44-2661 
"CNGA2 WILD-TYPE" "CNGA2 WILD-TYPE" "CNGA2 WILD-TYPE" "CNGA2 WILD-TYPE" 
     TCGA-44-2662      TCGA-44-2665      TCGA-44-2666      TCGA-44-2668 
"CNGA2 WILD-TYPE" "CNGA2 WILD-TYPE" "CNGA2 WILD-TYPE" "CNGA2 WILD-TYPE" 
     TCGA-44-3396      TCGA-44-3398      TCGA-44-3918      TCGA-44-3919 
"CNGA2 WILD-TYPE" "CNGA2 WILD-TYPE" "CNGA2 WILD-TYPE" "CNGA2 WILD-TYPE" 
     TCGA-44-4112      TCGA-44-5643      TCGA-44-5645      TCGA-44-6144 
"CNGA2 WILD-TYPE" "CNGA2 WILD-TYPE" "CNGA2 WILD-TYPE" "CNGA2 WILD-TYPE" 
     TCGA-44-6145      TCGA-44-6146      TCGA-44-6147      TCGA-44-6148 
"CNGA2 WILD-TYPE" "CNGA2 WILD-TYPE" "CNGA2 WILD-TYPE" "CNGA2 WILD-TYPE" 
     TCGA-44-6774      TCGA-44-6775      TCGA-44-6776      TCGA-44-6777 
"CNGA2 WILD-TYPE" "CNGA2 WILD-TYPE" "CNGA2 WILD-TYPE" "CNGA2 WILD-TYPE" 
     TCGA-44-6778      TCGA-44-6779      TCGA-49-4486      TCGA-49-4487 
"CNGA2 WILD-TYPE" "CNGA2 WILD-TYPE" "CNGA2 WILD-TYPE" "CNGA2 WILD-TYPE" 
     TCGA-49-4488      TCGA-49-4490      TCGA-49-4494      TCGA-49-4501 
"CNGA2 WILD-TYPE" "CNGA2 WILD-TYPE" "CNGA2 WILD-TYPE" "CNGA2 WILD-TYPE" 
     TCGA-49-4505      TCGA-49-4506      TCGA-49-4507      TCGA-49-4510 
"CNGA2 WILD-TYPE" "CNGA2 WILD-TYPE" "CNGA2 WILD-TYPE" "CNGA2 WILD-TYPE" 
     TCGA-49-4512      TCGA-49-4514      TCGA-49-6742      TCGA-49-6743 
"CNGA2 WILD-TYPE" "CNGA2 WILD-TYPE"   "CNGA2 MUTATED" "CNGA2 WILD-TYPE" 
     TCGA-49-6744      TCGA-49-6745      TCGA-50-5044      TCGA-50-5045 
"CNGA2 WILD-TYPE" "CNGA2 WILD-TYPE" "CNGA2 WILD-TYPE"   "CNGA2 MUTATED" 
     TCGA-50-5049      TCGA-50-5051      TCGA-50-5055      TCGA-50-5066 
"CNGA2 WILD-TYPE" "CNGA2 WILD-TYPE" "CNGA2 WILD-TYPE" "CNGA2 WILD-TYPE" 
     TCGA-50-5068      TCGA-50-5072      TCGA-50-5930      TCGA-50-5931 
"CNGA2 WILD-TYPE" "CNGA2 WILD-TYPE" "CNGA2 WILD-TYPE" "CNGA2 WILD-TYPE" 
     TCGA-50-5932      TCGA-50-5933      TCGA-50-5935      TCGA-50-5936 
"CNGA2 WILD-TYPE" "CNGA2 WILD-TYPE" "CNGA2 WILD-TYPE" "CNGA2 WILD-TYPE" 
     TCGA-50-5939      TCGA-50-5941      TCGA-50-5942      TCGA-50-5944 
"CNGA2 WILD-TYPE" "CNGA2 WILD-TYPE" "CNGA2 WILD-TYPE" "CNGA2 WILD-TYPE" 
     TCGA-50-5946      TCGA-50-6590      TCGA-50-6591      TCGA-50-6592 
"CNGA2 WILD-TYPE" "CNGA2 WILD-TYPE" "CNGA2 WILD-TYPE" "CNGA2 WILD-TYPE" 
     TCGA-50-6593      TCGA-50-6594      TCGA-50-6595      TCGA-50-6597 
"CNGA2 WILD-TYPE" "CNGA2 WILD-TYPE" "CNGA2 WILD-TYPE" "CNGA2 WILD-TYPE" 
     TCGA-55-1592      TCGA-55-1594      TCGA-55-1595      TCGA-55-1596 
  "CNGA2 MUTATED" "CNGA2 WILD-TYPE" "CNGA2 WILD-TYPE" "CNGA2 WILD-TYPE" 
     TCGA-55-5899      TCGA-55-6543      TCGA-55-6642      TCGA-55-6712 
"CNGA2 WILD-TYPE" "CNGA2 WILD-TYPE" "CNGA2 WILD-TYPE" "CNGA2 WILD-TYPE" 
     TCGA-64-1676      TCGA-64-1677      TCGA-64-1678      TCGA-64-1680 
  "CNGA2 MUTATED" "CNGA2 WILD-TYPE" "CNGA2 WILD-TYPE" "CNGA2 WILD-TYPE" 
     TCGA-64-5774      TCGA-64-5775      TCGA-64-5778      TCGA-64-5779 
"CNGA2 WILD-TYPE" "CNGA2 WILD-TYPE" "CNGA2 WILD-TYPE" "CNGA2 WILD-TYPE" 
     TCGA-64-5781      TCGA-64-5815      TCGA-67-3770      TCGA-67-3771 
"CNGA2 WILD-TYPE" "CNGA2 WILD-TYPE" "CNGA2 WILD-TYPE"   "CNGA2 MUTATED" 
     TCGA-67-3772      TCGA-67-3773      TCGA-67-3774      TCGA-67-6215 
"CNGA2 WILD-TYPE" "CNGA2 WILD-TYPE" "CNGA2 WILD-TYPE" "CNGA2 WILD-TYPE" 
     TCGA-67-6216      TCGA-67-6217      TCGA-71-6725      TCGA-73-4658 
"CNGA2 WILD-TYPE" "CNGA2 WILD-TYPE" "CNGA2 WILD-TYPE" "CNGA2 WILD-TYPE" 
     TCGA-73-4659      TCGA-73-4662      TCGA-73-4666      TCGA-73-4668 
"CNGA2 WILD-TYPE" "CNGA2 WILD-TYPE" "CNGA2 WILD-TYPE" "CNGA2 WILD-TYPE" 
     TCGA-73-4670      TCGA-73-4675      TCGA-73-4676      TCGA-73-4677 
"CNGA2 WILD-TYPE" "CNGA2 WILD-TYPE" "CNGA2 WILD-TYPE" "CNGA2 WILD-TYPE" 
     TCGA-91-6828      TCGA-91-6829      TCGA-91-6831      TCGA-91-6835 
"CNGA2 WILD-TYPE" "CNGA2 WILD-TYPE" "CNGA2 WILD-TYPE" "CNGA2 WILD-TYPE" 
     TCGA-91-6836 
"CNGA2 WILD-TYPE" 
     TCGA-05-4249      TCGA-05-4250      TCGA-05-4382      TCGA-05-4384 
"CNGA2 WILD-TYPE" "CNGA2 WILD-TYPE" "CNGA2 WILD-TYPE" "CNGA2 WILD-TYPE" 
     TCGA-05-4390      TCGA-05-4396      TCGA-05-4397      TCGA-05-4398 
"CNGA2 WILD-TYPE"   "CNGA2 MUTATED" "CNGA2 WILD-TYPE" "CNGA2 WILD-TYPE" 
     TCGA-05-4402      TCGA-05-4405      TCGA-05-4415      TCGA-05-4417 
"CNGA2 WILD-TYPE" "CNGA2 WILD-TYPE" "CNGA2 WILD-TYPE" "CNGA2 WILD-TYPE" 
     TCGA-05-4418      TCGA-05-4420      TCGA-05-4424      TCGA-05-4426 
"CNGA2 WILD-TYPE"   "CNGA2 MUTATED" "CNGA2 WILD-TYPE" "CNGA2 WILD-TYPE" 
     TCGA-05-4427      TCGA-05-4430      TCGA-05-4432      TCGA-05-4433 
  "CNGA2 MUTATED"   "CNGA2 MUTATED" "CNGA2 WILD-TYPE" "CNGA2 WILD-TYPE" 
     TCGA-05-4434      TCGA-05-5420      TCGA-05-5423      TCGA-05-5425 
"CNGA2 WILD-TYPE" "CNGA2 WILD-TYPE" "CNGA2 WILD-TYPE" "CNGA2 WILD-TYPE" 
     TCGA-05-5429      TCGA-05-5715      TCGA-35-3615      TCGA-35-4122 
"CNGA2 WILD-TYPE" "CNGA2 WILD-TYPE" "CNGA2 WILD-TYPE" "CNGA2 WILD-TYPE" 
     TCGA-35-4123      TCGA-35-5375      TCGA-38-4625      TCGA-38-4626 
"CNGA2 WILD-TYPE" "CNGA2 WILD-TYPE" "CNGA2 WILD-TYPE" "CNGA2 WILD-TYPE" 
     TCGA-38-4627      TCGA-38-4628      TCGA-38-4629      TCGA-38-4630 
"CNGA2 WILD-TYPE" "CNGA2 WILD-TYPE" "CNGA2 WILD-TYPE" "CNGA2 WILD-TYPE" 
     TCGA-38-4631      TCGA-38-4632      TCGA-38-6178      TCGA-44-2655 
"CNGA2 WILD-TYPE" "CNGA2 WILD-TYPE" "CNGA2 WILD-TYPE" "CNGA2 WILD-TYPE" 
     TCGA-44-2656      TCGA-44-2657      TCGA-44-2659      TCGA-44-2661 
"CNGA2 WILD-TYPE" "CNGA2 WILD-TYPE" "CNGA2 WILD-TYPE" "CNGA2 WILD-TYPE" 
     TCGA-44-2662      TCGA-44-2665      TCGA-44-2666      TCGA-44-2668 
"CNGA2 WILD-TYPE" "CNGA2 WILD-TYPE" "CNGA2 WILD-TYPE" "CNGA2 WILD-TYPE" 
     TCGA-44-3396      TCGA-44-3398      TCGA-44-3918      TCGA-44-3919 
"CNGA2 WILD-TYPE" "CNGA2 WILD-TYPE" "CNGA2 WILD-TYPE" "CNGA2 WILD-TYPE" 
     TCGA-44-4112      TCGA-44-5643      TCGA-44-5645      TCGA-44-6144 
"CNGA2 WILD-TYPE" "CNGA2 WILD-TYPE" "CNGA2 WILD-TYPE" "CNGA2 WILD-TYPE" 
     TCGA-44-6145      TCGA-44-6146      TCGA-44-6147      TCGA-44-6148 
"CNGA2 WILD-TYPE" "CNGA2 WILD-TYPE" "CNGA2 WILD-TYPE" "CNGA2 WILD-TYPE" 
     TCGA-44-6774      TCGA-44-6775      TCGA-44-6776      TCGA-44-6777 
"CNGA2 WILD-TYPE" "CNGA2 WILD-TYPE" "CNGA2 WILD-TYPE" "CNGA2 WILD-TYPE" 
     TCGA-44-6778      TCGA-44-6779      TCGA-49-4486      TCGA-49-4487 
"CNGA2 WILD-TYPE" "CNGA2 WILD-TYPE" "CNGA2 WILD-TYPE" "CNGA2 WILD-TYPE" 
     TCGA-49-4488      TCGA-49-4490      TCGA-49-4494      TCGA-49-4501 
"CNGA2 WILD-TYPE" "CNGA2 WILD-TYPE" "CNGA2 WILD-TYPE" "CNGA2 WILD-TYPE" 
     TCGA-49-4505      TCGA-49-4506      TCGA-49-4507      TCGA-49-4510 
"CNGA2 WILD-TYPE" "CNGA2 WILD-TYPE" "CNGA2 WILD-TYPE" "CNGA2 WILD-TYPE" 
     TCGA-49-4512      TCGA-49-4514      TCGA-49-6742      TCGA-49-6743 
"CNGA2 WILD-TYPE" "CNGA2 WILD-TYPE"   "CNGA2 MUTATED" "CNGA2 WILD-TYPE" 
     TCGA-49-6744      TCGA-49-6745      TCGA-50-5044      TCGA-50-5045 
"CNGA2 WILD-TYPE" "CNGA2 WILD-TYPE" "CNGA2 WILD-TYPE"   "CNGA2 MUTATED" 
     TCGA-50-5049      TCGA-50-5051      TCGA-50-5055      TCGA-50-5066 
"CNGA2 WILD-TYPE" "CNGA2 WILD-TYPE" "CNGA2 WILD-TYPE" "CNGA2 WILD-TYPE" 
     TCGA-50-5068      TCGA-50-5072      TCGA-50-5930      TCGA-50-5931 
"CNGA2 WILD-TYPE" "CNGA2 WILD-TYPE" "CNGA2 WILD-TYPE" "CNGA2 WILD-TYPE" 
     TCGA-50-5932      TCGA-50-5933      TCGA-50-5935      TCGA-50-5936 
"CNGA2 WILD-TYPE" "CNGA2 WILD-TYPE" "CNGA2 WILD-TYPE" "CNGA2 WILD-TYPE" 
     TCGA-50-5939      TCGA-50-5941      TCGA-50-5942      TCGA-50-5944 
"CNGA2 WILD-TYPE" "CNGA2 WILD-TYPE" "CNGA2 WILD-TYPE" "CNGA2 WILD-TYPE" 
     TCGA-50-5946      TCGA-50-6590      TCGA-50-6591      TCGA-50-6592 
"CNGA2 WILD-TYPE" "CNGA2 WILD-TYPE" "CNGA2 WILD-TYPE" "CNGA2 WILD-TYPE" 
     TCGA-50-6593      TCGA-50-6594      TCGA-50-6595      TCGA-50-6597 
"CNGA2 WILD-TYPE" "CNGA2 WILD-TYPE" "CNGA2 WILD-TYPE" "CNGA2 WILD-TYPE" 
     TCGA-55-1592      TCGA-55-1594      TCGA-55-1595      TCGA-55-1596 
  "CNGA2 MUTATED" "CNGA2 WILD-TYPE" "CNGA2 WILD-TYPE" "CNGA2 WILD-TYPE" 
     TCGA-55-5899      TCGA-55-6543      TCGA-55-6642      TCGA-55-6712 
"CNGA2 WILD-TYPE" "CNGA2 WILD-TYPE" "CNGA2 WILD-TYPE" "CNGA2 WILD-TYPE" 
     TCGA-64-1676      TCGA-64-1677      TCGA-64-1678      TCGA-64-1680 
  "CNGA2 MUTATED" "CNGA2 WILD-TYPE" "CNGA2 WILD-TYPE" "CNGA2 WILD-TYPE" 
     TCGA-64-5774      TCGA-64-5775      TCGA-64-5778      TCGA-64-5779 
"CNGA2 WILD-TYPE" "CNGA2 WILD-TYPE" "CNGA2 WILD-TYPE" "CNGA2 WILD-TYPE" 
     TCGA-64-5781      TCGA-64-5815      TCGA-67-3770      TCGA-67-3771 
"CNGA2 WILD-TYPE" "CNGA2 WILD-TYPE" "CNGA2 WILD-TYPE"   "CNGA2 MUTATED" 
     TCGA-67-3772      TCGA-67-3773      TCGA-67-3774      TCGA-67-6215 
"CNGA2 WILD-TYPE" "CNGA2 WILD-TYPE" "CNGA2 WILD-TYPE" "CNGA2 WILD-TYPE" 
     TCGA-67-6216      TCGA-67-6217      TCGA-71-6725      TCGA-73-4658 
"CNGA2 WILD-TYPE" "CNGA2 WILD-TYPE" "CNGA2 WILD-TYPE" "CNGA2 WILD-TYPE" 
     TCGA-73-4659      TCGA-73-4662      TCGA-73-4666      TCGA-73-4668 
"CNGA2 WILD-TYPE" "CNGA2 WILD-TYPE" "CNGA2 WILD-TYPE" "CNGA2 WILD-TYPE" 
     TCGA-73-4670      TCGA-73-4675      TCGA-73-4676      TCGA-73-4677 
"CNGA2 WILD-TYPE" "CNGA2 WILD-TYPE" "CNGA2 WILD-TYPE" "CNGA2 WILD-TYPE" 
     TCGA-91-6828      TCGA-91-6829      TCGA-91-6831      TCGA-91-6835 
"CNGA2 WILD-TYPE" "CNGA2 WILD-TYPE" "CNGA2 WILD-TYPE" "CNGA2 WILD-TYPE" 
     TCGA-91-6836 
"CNGA2 WILD-TYPE" 
[1] "hr=" "1.6"
D180V2, continuous
D180V3, binary
[1] "tbl2"
                 cls
clus              [,1] [,2]
  CNGA2 MUTATED      4    7
  CNGA2 WILD-TYPE   89   72
        clus
vv       CNGA2 MUTATED CNGA2 WILD-TYPE
  FEMALE             4              89
  MALE               7              72
D180V4, continuous
D180V5, multiclass
D180V6, multiclass
    clus
vv   CNGA2 MUTATED CNGA2 WILD-TYPE
  T1             3              38
  T2             7             101
  T3             0              14
  T4             1               7
D180V7, multiclass
       clus
vv      CNGA2 MUTATED CNGA2 WILD-TYPE
  N0                6              89
  N1                5              32
  N2+N3             0              35
D180V8, multiclass
    clus
vv   CNGA2 MUTATED CNGA2 WILD-TYPE
  M0            10             127
  M1             0               9
  MX             1              21
D180V9, multiclass
     clus
vv    CNGA2 MUTATED CNGA2 WILD-TYPE
  I               7              81
  II              3              30
  III             1              38
  IV              0               9
D180V10, binary
[1] "tbl2"
                 cls
clus              [,1] [,2]
  CNGA2 MUTATED      1   10
  CNGA2 WILD-TYPE   15  146
     clus
vv    CNGA2 MUTATED CNGA2 WILD-TYPE
  NO              1              15
  YES            10             146
D180V11, continuous
D180V12, continuous
D180V13, multiclass
                                             clus
vv                                            CNGA2 MUTATED CNGA2 WILD-TYPE
  CURRENT REFORMED SMOKER FOR < OR = 15 YEARS             5              57
  CURRENT REFORMED SMOKER FOR > 15 YEARS                  3              43
  CURRENT SMOKER                                          2              26
  LIFELONG NON-SMOKER                                     0              24
D180V14, continuous

Clustering(181) Variable = CDH18 MUTATION ANALYSIS
D181V1, survival
                 sevent
clus2              0  1
  CDH18 MUTATED   12  5
  CDH18 WILD-TYPE 87 45
  CDH18 MUTATED CDH18 WILD-TYPE 
             17             132 
  CDH18 MUTATED CDH18 WILD-TYPE 
              5              45 
$`CDH18 MUTATED`
TCGA-05-4398 TCGA-05-4424 TCGA-05-4427 TCGA-35-5375 TCGA-38-4625 TCGA-38-4631 
       47.05        30.02        26.01         8.68        47.61        11.64 
TCGA-44-3918 TCGA-44-6775 TCGA-44-6777 TCGA-49-4514 TCGA-49-6743 TCGA-50-5066 
        6.44         2.70        32.45        43.20        12.13         9.76 
TCGA-50-5931 TCGA-50-5933 TCGA-50-6592 TCGA-64-5781 TCGA-73-4668 
        8.78        77.88        25.51        39.52        15.35 

$`CDH18 WILD-TYPE`
TCGA-05-4249 TCGA-05-4250 TCGA-05-4382 TCGA-05-4384 TCGA-05-4390 TCGA-05-4396 
       38.07         3.98        19.92        14.01        37.02         9.96 
TCGA-05-4397 TCGA-05-4402 TCGA-05-4405 TCGA-05-4415 TCGA-05-4417 TCGA-05-4418 
       24.03         8.02        20.05         2.96        14.93         8.98 
TCGA-05-4420 TCGA-05-4426 TCGA-05-4430 TCGA-05-4432 TCGA-05-4433 TCGA-05-4434 
       29.95        26.01        25.02        25.02        24.00        15.02 
TCGA-05-5420 TCGA-05-5423 TCGA-05-5425 TCGA-05-5429 TCGA-05-5715 TCGA-35-3615 
        1.02         4.96         2.96         0.99         2.04         0.46 
TCGA-35-4122 TCGA-35-4123 TCGA-38-4626 TCGA-38-4627 TCGA-38-4628 TCGA-38-4629 
        7.36         5.95        85.32        37.71        49.02        28.37 
TCGA-38-4630 TCGA-38-4632 TCGA-38-6178 TCGA-44-2655 TCGA-44-2656 TCGA-44-2657 
       35.28        44.61         5.19        18.87        19.10        13.15 
TCGA-44-2659 TCGA-44-2661 TCGA-44-2662 TCGA-44-2665 TCGA-44-2666 TCGA-44-2668 
       17.39         3.39        15.78        13.15         3.19         8.09 
TCGA-44-3396 TCGA-44-3398 TCGA-44-3919 TCGA-44-4112 TCGA-44-5643 TCGA-44-5645 
       10.22         8.32         6.21         4.60         3.48         6.84 
TCGA-44-6144 TCGA-44-6145 TCGA-44-6146 TCGA-44-6147 TCGA-44-6148 TCGA-44-6774 
        0.30         3.35         9.93         7.76         3.12         5.42 
TCGA-44-6776 TCGA-44-6778 TCGA-44-6779 TCGA-49-4486 TCGA-49-4487 TCGA-49-4488 
       63.72        36.49        16.41        76.21        28.11        28.57 
TCGA-49-4490 TCGA-49-4494 TCGA-49-4501 TCGA-49-4505 TCGA-49-4506 TCGA-49-4507 
       12.66        35.54        46.72        14.07        32.84         8.81 
TCGA-49-4510 TCGA-49-4512 TCGA-49-6742 TCGA-49-6744 TCGA-49-6745 TCGA-50-5044 
       29.46        29.75        15.02        12.99         4.93        20.48 
TCGA-50-5045 TCGA-50-5049 TCGA-50-5051 TCGA-50-5055 TCGA-50-5068 TCGA-50-5072 
       71.47        48.82        14.96        25.81        49.28         8.05 
TCGA-50-5930 TCGA-50-5932 TCGA-50-5935 TCGA-50-5936 TCGA-50-5939 TCGA-50-5941 
        9.27        35.87        21.47         8.45        15.12         9.37 
TCGA-50-5942 TCGA-50-5944 TCGA-50-5946 TCGA-50-6590 TCGA-50-6591 TCGA-50-6593 
        4.44        12.26        11.47        42.31         3.88        11.05 
TCGA-50-6594 TCGA-50-6595 TCGA-50-6597 TCGA-55-1592 TCGA-55-1594 TCGA-55-1595 
       12.16         6.21        33.37        23.05        38.73        48.62 
TCGA-55-1596 TCGA-55-5899 TCGA-55-6543 TCGA-55-6642 TCGA-55-6712 TCGA-64-1676 
       45.17         2.86         0.07        32.61         0.79        56.81 
TCGA-64-1677 TCGA-64-1678 TCGA-64-1680 TCGA-64-5774 TCGA-64-5775 TCGA-64-5778 
       20.65        39.09        37.02        83.84         0.10        30.44 
TCGA-64-5779 TCGA-64-5815 TCGA-67-3770 TCGA-67-3771 TCGA-67-3772 TCGA-67-3773 
       16.67         7.33         0.99         1.97         0.59         2.04 
TCGA-67-3774 TCGA-67-6215 TCGA-67-6216 TCGA-67-6217 TCGA-71-6725 TCGA-73-4658 
        0.59         0.89         0.69        13.87         2.01        52.57 
TCGA-73-4659 TCGA-73-4662 TCGA-73-4666 TCGA-73-4670 TCGA-73-4675 TCGA-73-4676 
       23.38        29.95        20.28         0.46         1.32         4.01 
TCGA-73-4677 TCGA-91-6828 TCGA-91-6829 TCGA-91-6831 TCGA-91-6835 TCGA-91-6836 
        1.25         1.22        41.33         1.28         1.15         0.36 

  CDH18 MUTATED CDH18 WILD-TYPE 
           2.70            0.07 
  CDH18 MUTATED CDH18 WILD-TYPE 
          77.88           85.32 
  CDH18 MUTATED CDH18 WILD-TYPE 
          25.51           13.15 
[1] "2.7 - 77.9 (25.5)" "0.1 - 85.3 (13.2)"
     TCGA-05-4249      TCGA-05-4250      TCGA-05-4382      TCGA-05-4384 
"CDH18 WILD-TYPE" "CDH18 WILD-TYPE" "CDH18 WILD-TYPE" "CDH18 WILD-TYPE" 
     TCGA-05-4390      TCGA-05-4396      TCGA-05-4397      TCGA-05-4398 
"CDH18 WILD-TYPE" "CDH18 WILD-TYPE" "CDH18 WILD-TYPE"   "CDH18 MUTATED" 
     TCGA-05-4402      TCGA-05-4405      TCGA-05-4415      TCGA-05-4417 
"CDH18 WILD-TYPE" "CDH18 WILD-TYPE" "CDH18 WILD-TYPE" "CDH18 WILD-TYPE" 
     TCGA-05-4418      TCGA-05-4420      TCGA-05-4424      TCGA-05-4426 
"CDH18 WILD-TYPE" "CDH18 WILD-TYPE"   "CDH18 MUTATED" "CDH18 WILD-TYPE" 
     TCGA-05-4427      TCGA-05-4430      TCGA-05-4432      TCGA-05-4433 
  "CDH18 MUTATED" "CDH18 WILD-TYPE" "CDH18 WILD-TYPE" "CDH18 WILD-TYPE" 
     TCGA-05-4434      TCGA-05-5420      TCGA-05-5423      TCGA-05-5425 
"CDH18 WILD-TYPE" "CDH18 WILD-TYPE" "CDH18 WILD-TYPE" "CDH18 WILD-TYPE" 
     TCGA-05-5429      TCGA-05-5715      TCGA-35-3615      TCGA-35-4122 
"CDH18 WILD-TYPE" "CDH18 WILD-TYPE" "CDH18 WILD-TYPE" "CDH18 WILD-TYPE" 
     TCGA-35-4123      TCGA-35-5375      TCGA-38-4625      TCGA-38-4626 
"CDH18 WILD-TYPE"   "CDH18 MUTATED"   "CDH18 MUTATED" "CDH18 WILD-TYPE" 
     TCGA-38-4627      TCGA-38-4628      TCGA-38-4629      TCGA-38-4630 
"CDH18 WILD-TYPE" "CDH18 WILD-TYPE" "CDH18 WILD-TYPE" "CDH18 WILD-TYPE" 
     TCGA-38-4631      TCGA-38-4632      TCGA-38-6178      TCGA-44-2655 
  "CDH18 MUTATED" "CDH18 WILD-TYPE" "CDH18 WILD-TYPE" "CDH18 WILD-TYPE" 
     TCGA-44-2656      TCGA-44-2657      TCGA-44-2659      TCGA-44-2661 
"CDH18 WILD-TYPE" "CDH18 WILD-TYPE" "CDH18 WILD-TYPE" "CDH18 WILD-TYPE" 
     TCGA-44-2662      TCGA-44-2665      TCGA-44-2666      TCGA-44-2668 
"CDH18 WILD-TYPE" "CDH18 WILD-TYPE" "CDH18 WILD-TYPE" "CDH18 WILD-TYPE" 
     TCGA-44-3396      TCGA-44-3398      TCGA-44-3918      TCGA-44-3919 
"CDH18 WILD-TYPE" "CDH18 WILD-TYPE"   "CDH18 MUTATED" "CDH18 WILD-TYPE" 
     TCGA-44-4112      TCGA-44-5643      TCGA-44-5645      TCGA-44-6144 
"CDH18 WILD-TYPE" "CDH18 WILD-TYPE" "CDH18 WILD-TYPE" "CDH18 WILD-TYPE" 
     TCGA-44-6145      TCGA-44-6146      TCGA-44-6147      TCGA-44-6148 
"CDH18 WILD-TYPE" "CDH18 WILD-TYPE" "CDH18 WILD-TYPE" "CDH18 WILD-TYPE" 
     TCGA-44-6774      TCGA-44-6775      TCGA-44-6776      TCGA-44-6777 
"CDH18 WILD-TYPE"   "CDH18 MUTATED" "CDH18 WILD-TYPE"   "CDH18 MUTATED" 
     TCGA-44-6778      TCGA-44-6779      TCGA-49-4486      TCGA-49-4487 
"CDH18 WILD-TYPE" "CDH18 WILD-TYPE" "CDH18 WILD-TYPE" "CDH18 WILD-TYPE" 
     TCGA-49-4488      TCGA-49-4490      TCGA-49-4494      TCGA-49-4501 
"CDH18 WILD-TYPE" "CDH18 WILD-TYPE" "CDH18 WILD-TYPE" "CDH18 WILD-TYPE" 
     TCGA-49-4505      TCGA-49-4506      TCGA-49-4507      TCGA-49-4510 
"CDH18 WILD-TYPE" "CDH18 WILD-TYPE" "CDH18 WILD-TYPE" "CDH18 WILD-TYPE" 
     TCGA-49-4512      TCGA-49-4514      TCGA-49-6742      TCGA-49-6743 
"CDH18 WILD-TYPE"   "CDH18 MUTATED" "CDH18 WILD-TYPE"   "CDH18 MUTATED" 
     TCGA-49-6744      TCGA-49-6745      TCGA-50-5044      TCGA-50-5045 
"CDH18 WILD-TYPE" "CDH18 WILD-TYPE" "CDH18 WILD-TYPE" "CDH18 WILD-TYPE" 
     TCGA-50-5049      TCGA-50-5051      TCGA-50-5055      TCGA-50-5066 
"CDH18 WILD-TYPE" "CDH18 WILD-TYPE" "CDH18 WILD-TYPE"   "CDH18 MUTATED" 
     TCGA-50-5068      TCGA-50-5072      TCGA-50-5930      TCGA-50-5931 
"CDH18 WILD-TYPE" "CDH18 WILD-TYPE" "CDH18 WILD-TYPE"   "CDH18 MUTATED" 
     TCGA-50-5932      TCGA-50-5933      TCGA-50-5935      TCGA-50-5936 
"CDH18 WILD-TYPE"   "CDH18 MUTATED" "CDH18 WILD-TYPE" "CDH18 WILD-TYPE" 
     TCGA-50-5939      TCGA-50-5941      TCGA-50-5942      TCGA-50-5944 
"CDH18 WILD-TYPE" "CDH18 WILD-TYPE" "CDH18 WILD-TYPE" "CDH18 WILD-TYPE" 
     TCGA-50-5946      TCGA-50-6590      TCGA-50-6591      TCGA-50-6592 
"CDH18 WILD-TYPE" "CDH18 WILD-TYPE" "CDH18 WILD-TYPE"   "CDH18 MUTATED" 
     TCGA-50-6593      TCGA-50-6594      TCGA-50-6595      TCGA-50-6597 
"CDH18 WILD-TYPE" "CDH18 WILD-TYPE" "CDH18 WILD-TYPE" "CDH18 WILD-TYPE" 
     TCGA-55-1592      TCGA-55-1594      TCGA-55-1595      TCGA-55-1596 
"CDH18 WILD-TYPE" "CDH18 WILD-TYPE" "CDH18 WILD-TYPE" "CDH18 WILD-TYPE" 
     TCGA-55-5899      TCGA-55-6543      TCGA-55-6642      TCGA-55-6712 
"CDH18 WILD-TYPE" "CDH18 WILD-TYPE" "CDH18 WILD-TYPE" "CDH18 WILD-TYPE" 
     TCGA-64-1676      TCGA-64-1677      TCGA-64-1678      TCGA-64-1680 
"CDH18 WILD-TYPE" "CDH18 WILD-TYPE" "CDH18 WILD-TYPE" "CDH18 WILD-TYPE" 
     TCGA-64-5774      TCGA-64-5775      TCGA-64-5778      TCGA-64-5779 
"CDH18 WILD-TYPE" "CDH18 WILD-TYPE" "CDH18 WILD-TYPE" "CDH18 WILD-TYPE" 
     TCGA-64-5781      TCGA-64-5815      TCGA-67-3770      TCGA-67-3771 
  "CDH18 MUTATED" "CDH18 WILD-TYPE" "CDH18 WILD-TYPE" "CDH18 WILD-TYPE" 
     TCGA-67-3772      TCGA-67-3773      TCGA-67-3774      TCGA-67-6215 
"CDH18 WILD-TYPE" "CDH18 WILD-TYPE" "CDH18 WILD-TYPE" "CDH18 WILD-TYPE" 
     TCGA-67-6216      TCGA-67-6217      TCGA-71-6725      TCGA-73-4658 
"CDH18 WILD-TYPE" "CDH18 WILD-TYPE" "CDH18 WILD-TYPE" "CDH18 WILD-TYPE" 
     TCGA-73-4659      TCGA-73-4662      TCGA-73-4666      TCGA-73-4668 
"CDH18 WILD-TYPE" "CDH18 WILD-TYPE" "CDH18 WILD-TYPE"   "CDH18 MUTATED" 
     TCGA-73-4670      TCGA-73-4675      TCGA-73-4676      TCGA-73-4677 
"CDH18 WILD-TYPE" "CDH18 WILD-TYPE" "CDH18 WILD-TYPE" "CDH18 WILD-TYPE" 
     TCGA-91-6828      TCGA-91-6829      TCGA-91-6831      TCGA-91-6835 
"CDH18 WILD-TYPE" "CDH18 WILD-TYPE" "CDH18 WILD-TYPE" "CDH18 WILD-TYPE" 
     TCGA-91-6836 
"CDH18 WILD-TYPE" 
     TCGA-05-4249      TCGA-05-4250      TCGA-05-4382      TCGA-05-4384 
"CDH18 WILD-TYPE" "CDH18 WILD-TYPE" "CDH18 WILD-TYPE" "CDH18 WILD-TYPE" 
     TCGA-05-4390      TCGA-05-4396      TCGA-05-4397      TCGA-05-4398 
"CDH18 WILD-TYPE" "CDH18 WILD-TYPE" "CDH18 WILD-TYPE"   "CDH18 MUTATED" 
     TCGA-05-4402      TCGA-05-4405      TCGA-05-4415      TCGA-05-4417 
"CDH18 WILD-TYPE" "CDH18 WILD-TYPE" "CDH18 WILD-TYPE" "CDH18 WILD-TYPE" 
     TCGA-05-4418      TCGA-05-4420      TCGA-05-4424      TCGA-05-4426 
"CDH18 WILD-TYPE" "CDH18 WILD-TYPE"   "CDH18 MUTATED" "CDH18 WILD-TYPE" 
     TCGA-05-4427      TCGA-05-4430      TCGA-05-4432      TCGA-05-4433 
  "CDH18 MUTATED" "CDH18 WILD-TYPE" "CDH18 WILD-TYPE" "CDH18 WILD-TYPE" 
     TCGA-05-4434      TCGA-05-5420      TCGA-05-5423      TCGA-05-5425 
"CDH18 WILD-TYPE" "CDH18 WILD-TYPE" "CDH18 WILD-TYPE" "CDH18 WILD-TYPE" 
     TCGA-05-5429      TCGA-05-5715      TCGA-35-3615      TCGA-35-4122 
"CDH18 WILD-TYPE" "CDH18 WILD-TYPE" "CDH18 WILD-TYPE" "CDH18 WILD-TYPE" 
     TCGA-35-4123      TCGA-35-5375      TCGA-38-4625      TCGA-38-4626 
"CDH18 WILD-TYPE"   "CDH18 MUTATED"   "CDH18 MUTATED" "CDH18 WILD-TYPE" 
     TCGA-38-4627      TCGA-38-4628      TCGA-38-4629      TCGA-38-4630 
"CDH18 WILD-TYPE" "CDH18 WILD-TYPE" "CDH18 WILD-TYPE" "CDH18 WILD-TYPE" 
     TCGA-38-4631      TCGA-38-4632      TCGA-38-6178      TCGA-44-2655 
  "CDH18 MUTATED" "CDH18 WILD-TYPE" "CDH18 WILD-TYPE" "CDH18 WILD-TYPE" 
     TCGA-44-2656      TCGA-44-2657      TCGA-44-2659      TCGA-44-2661 
"CDH18 WILD-TYPE" "CDH18 WILD-TYPE" "CDH18 WILD-TYPE" "CDH18 WILD-TYPE" 
     TCGA-44-2662      TCGA-44-2665      TCGA-44-2666      TCGA-44-2668 
"CDH18 WILD-TYPE" "CDH18 WILD-TYPE" "CDH18 WILD-TYPE" "CDH18 WILD-TYPE" 
     TCGA-44-3396      TCGA-44-3398      TCGA-44-3918      TCGA-44-3919 
"CDH18 WILD-TYPE" "CDH18 WILD-TYPE"   "CDH18 MUTATED" "CDH18 WILD-TYPE" 
     TCGA-44-4112      TCGA-44-5643      TCGA-44-5645      TCGA-44-6144 
"CDH18 WILD-TYPE" "CDH18 WILD-TYPE" "CDH18 WILD-TYPE" "CDH18 WILD-TYPE" 
     TCGA-44-6145      TCGA-44-6146      TCGA-44-6147      TCGA-44-6148 
"CDH18 WILD-TYPE" "CDH18 WILD-TYPE" "CDH18 WILD-TYPE" "CDH18 WILD-TYPE" 
     TCGA-44-6774      TCGA-44-6775      TCGA-44-6776      TCGA-44-6777 
"CDH18 WILD-TYPE"   "CDH18 MUTATED" "CDH18 WILD-TYPE"   "CDH18 MUTATED" 
     TCGA-44-6778      TCGA-44-6779      TCGA-49-4486      TCGA-49-4487 
"CDH18 WILD-TYPE" "CDH18 WILD-TYPE" "CDH18 WILD-TYPE" "CDH18 WILD-TYPE" 
     TCGA-49-4488      TCGA-49-4490      TCGA-49-4494      TCGA-49-4501 
"CDH18 WILD-TYPE" "CDH18 WILD-TYPE" "CDH18 WILD-TYPE" "CDH18 WILD-TYPE" 
     TCGA-49-4505      TCGA-49-4506      TCGA-49-4507      TCGA-49-4510 
"CDH18 WILD-TYPE" "CDH18 WILD-TYPE" "CDH18 WILD-TYPE" "CDH18 WILD-TYPE" 
     TCGA-49-4512      TCGA-49-4514      TCGA-49-6742      TCGA-49-6743 
"CDH18 WILD-TYPE"   "CDH18 MUTATED" "CDH18 WILD-TYPE"   "CDH18 MUTATED" 
     TCGA-49-6744      TCGA-49-6745      TCGA-50-5044      TCGA-50-5045 
"CDH18 WILD-TYPE" "CDH18 WILD-TYPE" "CDH18 WILD-TYPE" "CDH18 WILD-TYPE" 
     TCGA-50-5049      TCGA-50-5051      TCGA-50-5055      TCGA-50-5066 
"CDH18 WILD-TYPE" "CDH18 WILD-TYPE" "CDH18 WILD-TYPE"   "CDH18 MUTATED" 
     TCGA-50-5068      TCGA-50-5072      TCGA-50-5930      TCGA-50-5931 
"CDH18 WILD-TYPE" "CDH18 WILD-TYPE" "CDH18 WILD-TYPE"   "CDH18 MUTATED" 
     TCGA-50-5932      TCGA-50-5933      TCGA-50-5935      TCGA-50-5936 
"CDH18 WILD-TYPE"   "CDH18 MUTATED" "CDH18 WILD-TYPE" "CDH18 WILD-TYPE" 
     TCGA-50-5939      TCGA-50-5941      TCGA-50-5942      TCGA-50-5944 
"CDH18 WILD-TYPE" "CDH18 WILD-TYPE" "CDH18 WILD-TYPE" "CDH18 WILD-TYPE" 
     TCGA-50-5946      TCGA-50-6590      TCGA-50-6591      TCGA-50-6592 
"CDH18 WILD-TYPE" "CDH18 WILD-TYPE" "CDH18 WILD-TYPE"   "CDH18 MUTATED" 
     TCGA-50-6593      TCGA-50-6594      TCGA-50-6595      TCGA-50-6597 
"CDH18 WILD-TYPE" "CDH18 WILD-TYPE" "CDH18 WILD-TYPE" "CDH18 WILD-TYPE" 
     TCGA-55-1592      TCGA-55-1594      TCGA-55-1595      TCGA-55-1596 
"CDH18 WILD-TYPE" "CDH18 WILD-TYPE" "CDH18 WILD-TYPE" "CDH18 WILD-TYPE" 
     TCGA-55-5899      TCGA-55-6543      TCGA-55-6642      TCGA-55-6712 
"CDH18 WILD-TYPE" "CDH18 WILD-TYPE" "CDH18 WILD-TYPE" "CDH18 WILD-TYPE" 
     TCGA-64-1676      TCGA-64-1677      TCGA-64-1678      TCGA-64-1680 
"CDH18 WILD-TYPE" "CDH18 WILD-TYPE" "CDH18 WILD-TYPE" "CDH18 WILD-TYPE" 
     TCGA-64-5774      TCGA-64-5775      TCGA-64-5778      TCGA-64-5779 
"CDH18 WILD-TYPE" "CDH18 WILD-TYPE" "CDH18 WILD-TYPE" "CDH18 WILD-TYPE" 
     TCGA-64-5781      TCGA-64-5815      TCGA-67-3770      TCGA-67-3771 
  "CDH18 MUTATED" "CDH18 WILD-TYPE" "CDH18 WILD-TYPE" "CDH18 WILD-TYPE" 
     TCGA-67-3772      TCGA-67-3773      TCGA-67-3774      TCGA-67-6215 
"CDH18 WILD-TYPE" "CDH18 WILD-TYPE" "CDH18 WILD-TYPE" "CDH18 WILD-TYPE" 
     TCGA-67-6216      TCGA-67-6217      TCGA-71-6725      TCGA-73-4658 
"CDH18 WILD-TYPE" "CDH18 WILD-TYPE" "CDH18 WILD-TYPE" "CDH18 WILD-TYPE" 
     TCGA-73-4659      TCGA-73-4662      TCGA-73-4666      TCGA-73-4668 
"CDH18 WILD-TYPE" "CDH18 WILD-TYPE" "CDH18 WILD-TYPE"   "CDH18 MUTATED" 
     TCGA-73-4670      TCGA-73-4675      TCGA-73-4676      TCGA-73-4677 
"CDH18 WILD-TYPE" "CDH18 WILD-TYPE" "CDH18 WILD-TYPE" "CDH18 WILD-TYPE" 
     TCGA-91-6828      TCGA-91-6829      TCGA-91-6831      TCGA-91-6835 
"CDH18 WILD-TYPE" "CDH18 WILD-TYPE" "CDH18 WILD-TYPE" "CDH18 WILD-TYPE" 
     TCGA-91-6836 
"CDH18 WILD-TYPE" 
     TCGA-05-4249      TCGA-05-4250      TCGA-05-4382      TCGA-05-4384 
"CDH18 WILD-TYPE" "CDH18 WILD-TYPE" "CDH18 WILD-TYPE" "CDH18 WILD-TYPE" 
     TCGA-05-4390      TCGA-05-4396      TCGA-05-4397      TCGA-05-4398 
"CDH18 WILD-TYPE" "CDH18 WILD-TYPE" "CDH18 WILD-TYPE"   "CDH18 MUTATED" 
     TCGA-05-4402      TCGA-05-4405      TCGA-05-4415      TCGA-05-4417 
"CDH18 WILD-TYPE" "CDH18 WILD-TYPE" "CDH18 WILD-TYPE" "CDH18 WILD-TYPE" 
     TCGA-05-4418      TCGA-05-4420      TCGA-05-4424      TCGA-05-4426 
"CDH18 WILD-TYPE" "CDH18 WILD-TYPE"   "CDH18 MUTATED" "CDH18 WILD-TYPE" 
     TCGA-05-4427      TCGA-05-4430      TCGA-05-4432      TCGA-05-4433 
  "CDH18 MUTATED" "CDH18 WILD-TYPE" "CDH18 WILD-TYPE" "CDH18 WILD-TYPE" 
     TCGA-05-4434      TCGA-05-5420      TCGA-05-5423      TCGA-05-5425 
"CDH18 WILD-TYPE" "CDH18 WILD-TYPE" "CDH18 WILD-TYPE" "CDH18 WILD-TYPE" 
     TCGA-05-5429      TCGA-05-5715      TCGA-35-3615      TCGA-35-4122 
"CDH18 WILD-TYPE" "CDH18 WILD-TYPE" "CDH18 WILD-TYPE" "CDH18 WILD-TYPE" 
     TCGA-35-4123      TCGA-35-5375      TCGA-38-4625      TCGA-38-4626 
"CDH18 WILD-TYPE"   "CDH18 MUTATED"   "CDH18 MUTATED" "CDH18 WILD-TYPE" 
     TCGA-38-4627      TCGA-38-4628      TCGA-38-4629      TCGA-38-4630 
"CDH18 WILD-TYPE" "CDH18 WILD-TYPE" "CDH18 WILD-TYPE" "CDH18 WILD-TYPE" 
     TCGA-38-4631      TCGA-38-4632      TCGA-38-6178      TCGA-44-2655 
  "CDH18 MUTATED" "CDH18 WILD-TYPE" "CDH18 WILD-TYPE" "CDH18 WILD-TYPE" 
     TCGA-44-2656      TCGA-44-2657      TCGA-44-2659      TCGA-44-2661 
"CDH18 WILD-TYPE" "CDH18 WILD-TYPE" "CDH18 WILD-TYPE" "CDH18 WILD-TYPE" 
     TCGA-44-2662      TCGA-44-2665      TCGA-44-2666      TCGA-44-2668 
"CDH18 WILD-TYPE" "CDH18 WILD-TYPE" "CDH18 WILD-TYPE" "CDH18 WILD-TYPE" 
     TCGA-44-3396      TCGA-44-3398      TCGA-44-3918      TCGA-44-3919 
"CDH18 WILD-TYPE" "CDH18 WILD-TYPE"   "CDH18 MUTATED" "CDH18 WILD-TYPE" 
     TCGA-44-4112      TCGA-44-5643      TCGA-44-5645      TCGA-44-6144 
"CDH18 WILD-TYPE" "CDH18 WILD-TYPE" "CDH18 WILD-TYPE" "CDH18 WILD-TYPE" 
     TCGA-44-6145      TCGA-44-6146      TCGA-44-6147      TCGA-44-6148 
"CDH18 WILD-TYPE" "CDH18 WILD-TYPE" "CDH18 WILD-TYPE" "CDH18 WILD-TYPE" 
     TCGA-44-6774      TCGA-44-6775      TCGA-44-6776      TCGA-44-6777 
"CDH18 WILD-TYPE"   "CDH18 MUTATED" "CDH18 WILD-TYPE"   "CDH18 MUTATED" 
     TCGA-44-6778      TCGA-44-6779      TCGA-49-4486      TCGA-49-4487 
"CDH18 WILD-TYPE" "CDH18 WILD-TYPE" "CDH18 WILD-TYPE" "CDH18 WILD-TYPE" 
     TCGA-49-4488      TCGA-49-4490      TCGA-49-4494      TCGA-49-4501 
"CDH18 WILD-TYPE" "CDH18 WILD-TYPE" "CDH18 WILD-TYPE" "CDH18 WILD-TYPE" 
     TCGA-49-4505      TCGA-49-4506      TCGA-49-4507      TCGA-49-4510 
"CDH18 WILD-TYPE" "CDH18 WILD-TYPE" "CDH18 WILD-TYPE" "CDH18 WILD-TYPE" 
     TCGA-49-4512      TCGA-49-4514      TCGA-49-6742      TCGA-49-6743 
"CDH18 WILD-TYPE"   "CDH18 MUTATED" "CDH18 WILD-TYPE"   "CDH18 MUTATED" 
     TCGA-49-6744      TCGA-49-6745      TCGA-50-5044      TCGA-50-5045 
"CDH18 WILD-TYPE" "CDH18 WILD-TYPE" "CDH18 WILD-TYPE" "CDH18 WILD-TYPE" 
     TCGA-50-5049      TCGA-50-5051      TCGA-50-5055      TCGA-50-5066 
"CDH18 WILD-TYPE" "CDH18 WILD-TYPE" "CDH18 WILD-TYPE"   "CDH18 MUTATED" 
     TCGA-50-5068      TCGA-50-5072      TCGA-50-5930      TCGA-50-5931 
"CDH18 WILD-TYPE" "CDH18 WILD-TYPE" "CDH18 WILD-TYPE"   "CDH18 MUTATED" 
     TCGA-50-5932      TCGA-50-5933      TCGA-50-5935      TCGA-50-5936 
"CDH18 WILD-TYPE"   "CDH18 MUTATED" "CDH18 WILD-TYPE" "CDH18 WILD-TYPE" 
     TCGA-50-5939      TCGA-50-5941      TCGA-50-5942      TCGA-50-5944 
"CDH18 WILD-TYPE" "CDH18 WILD-TYPE" "CDH18 WILD-TYPE" "CDH18 WILD-TYPE" 
     TCGA-50-5946      TCGA-50-6590      TCGA-50-6591      TCGA-50-6592 
"CDH18 WILD-TYPE" "CDH18 WILD-TYPE" "CDH18 WILD-TYPE"   "CDH18 MUTATED" 
     TCGA-50-6593      TCGA-50-6594      TCGA-50-6595      TCGA-50-6597 
"CDH18 WILD-TYPE" "CDH18 WILD-TYPE" "CDH18 WILD-TYPE" "CDH18 WILD-TYPE" 
     TCGA-55-1592      TCGA-55-1594      TCGA-55-1595      TCGA-55-1596 
"CDH18 WILD-TYPE" "CDH18 WILD-TYPE" "CDH18 WILD-TYPE" "CDH18 WILD-TYPE" 
     TCGA-55-5899      TCGA-55-6543      TCGA-55-6642      TCGA-55-6712 
"CDH18 WILD-TYPE" "CDH18 WILD-TYPE" "CDH18 WILD-TYPE" "CDH18 WILD-TYPE" 
     TCGA-64-1676      TCGA-64-1677      TCGA-64-1678      TCGA-64-1680 
"CDH18 WILD-TYPE" "CDH18 WILD-TYPE" "CDH18 WILD-TYPE" "CDH18 WILD-TYPE" 
     TCGA-64-5774      TCGA-64-5775      TCGA-64-5778      TCGA-64-5779 
"CDH18 WILD-TYPE" "CDH18 WILD-TYPE" "CDH18 WILD-TYPE" "CDH18 WILD-TYPE" 
     TCGA-64-5781      TCGA-64-5815      TCGA-67-3770      TCGA-67-3771 
  "CDH18 MUTATED" "CDH18 WILD-TYPE" "CDH18 WILD-TYPE" "CDH18 WILD-TYPE" 
     TCGA-67-3772      TCGA-67-3773      TCGA-67-3774      TCGA-67-6215 
"CDH18 WILD-TYPE" "CDH18 WILD-TYPE" "CDH18 WILD-TYPE" "CDH18 WILD-TYPE" 
     TCGA-67-6216      TCGA-67-6217      TCGA-71-6725      TCGA-73-4658 
"CDH18 WILD-TYPE" "CDH18 WILD-TYPE" "CDH18 WILD-TYPE" "CDH18 WILD-TYPE" 
     TCGA-73-4659      TCGA-73-4662      TCGA-73-4666      TCGA-73-4668 
"CDH18 WILD-TYPE" "CDH18 WILD-TYPE" "CDH18 WILD-TYPE"   "CDH18 MUTATED" 
     TCGA-73-4670      TCGA-73-4675      TCGA-73-4676      TCGA-73-4677 
"CDH18 WILD-TYPE" "CDH18 WILD-TYPE" "CDH18 WILD-TYPE" "CDH18 WILD-TYPE" 
     TCGA-91-6828      TCGA-91-6829      TCGA-91-6831      TCGA-91-6835 
"CDH18 WILD-TYPE" "CDH18 WILD-TYPE" "CDH18 WILD-TYPE" "CDH18 WILD-TYPE" 
     TCGA-91-6836 
"CDH18 WILD-TYPE" 
[1] "hr=" "1.7"
D181V2, continuous
D181V3, binary
[1] "tbl2"
                 cls
clus              [,1] [,2]
  CDH18 MUTATED     14    7
  CDH18 WILD-TYPE   79   72
        clus
vv       CDH18 MUTATED CDH18 WILD-TYPE
  FEMALE            14              79
  MALE               7              72
D181V4, continuous
D181V5, multiclass
D181V6, multiclass
    clus
vv   CDH18 MUTATED CDH18 WILD-TYPE
  T1             4              37
  T2            13              95
  T3             2              12
  T4             2               6
D181V7, multiclass
       clus
vv      CDH18 MUTATED CDH18 WILD-TYPE
  N0               12              83
  N1                3              34
  N2+N3             5              30
D181V8, multiclass
    clus
vv   CDH18 MUTATED CDH18 WILD-TYPE
  M0            18             119
  M1             0               9
  MX             3              19
D181V9, multiclass
     clus
vv    CDH18 MUTATED CDH18 WILD-TYPE
  I              12              76
  II              4              29
  III             5              34
  IV              0               9
D181V10, binary
[1] "tbl2"
                 cls
clus              [,1] [,2]
  CDH18 MUTATED      2   19
  CDH18 WILD-TYPE   14  137
     clus
vv    CDH18 MUTATED CDH18 WILD-TYPE
  NO              2              14
  YES            19             137
D181V11, continuous
D181V12, continuous
D181V13, multiclass
                                             clus
vv                                            CDH18 MUTATED CDH18 WILD-TYPE
  CURRENT REFORMED SMOKER FOR < OR = 15 YEARS            12              50
  CURRENT REFORMED SMOKER FOR > 15 YEARS                  4              42
  CURRENT SMOKER                                          2              26
  LIFELONG NON-SMOKER                                     1              23
D181V14, continuous

Clustering(182) Variable = ST6GALNAC3 MUTATION ANALYSIS
D182V1, survival
                      sevent
clus2                   0  1
  ST6GALNAC3 MUTATED    7  1
  ST6GALNAC3 WILD-TYPE 92 49
  ST6GALNAC3 MUTATED ST6GALNAC3 WILD-TYPE 
                   8                  141 
  ST6GALNAC3 MUTATED ST6GALNAC3 WILD-TYPE 
                   1                   49 
$`ST6GALNAC3 MUTATED`
TCGA-05-4382 TCGA-05-4390 TCGA-05-4396 TCGA-05-4417 TCGA-44-2662 TCGA-44-3396 
       19.92        37.02         9.96        14.93        15.78        10.22 
TCGA-64-5781 TCGA-67-6217 
       39.52        13.87 

$`ST6GALNAC3 WILD-TYPE`
TCGA-05-4249 TCGA-05-4250 TCGA-05-4384 TCGA-05-4397 TCGA-05-4398 TCGA-05-4402 
       38.07         3.98        14.01        24.03        47.05         8.02 
TCGA-05-4405 TCGA-05-4415 TCGA-05-4418 TCGA-05-4420 TCGA-05-4424 TCGA-05-4426 
       20.05         2.96         8.98        29.95        30.02        26.01 
TCGA-05-4427 TCGA-05-4430 TCGA-05-4432 TCGA-05-4433 TCGA-05-4434 TCGA-05-5420 
       26.01        25.02        25.02        24.00        15.02         1.02 
TCGA-05-5423 TCGA-05-5425 TCGA-05-5429 TCGA-05-5715 TCGA-35-3615 TCGA-35-4122 
        4.96         2.96         0.99         2.04         0.46         7.36 
TCGA-35-4123 TCGA-35-5375 TCGA-38-4625 TCGA-38-4626 TCGA-38-4627 TCGA-38-4628 
        5.95         8.68        47.61        85.32        37.71        49.02 
TCGA-38-4629 TCGA-38-4630 TCGA-38-4631 TCGA-38-4632 TCGA-38-6178 TCGA-44-2655 
       28.37        35.28        11.64        44.61         5.19        18.87 
TCGA-44-2656 TCGA-44-2657 TCGA-44-2659 TCGA-44-2661 TCGA-44-2665 TCGA-44-2666 
       19.10        13.15        17.39         3.39        13.15         3.19 
TCGA-44-2668 TCGA-44-3398 TCGA-44-3918 TCGA-44-3919 TCGA-44-4112 TCGA-44-5643 
        8.09         8.32         6.44         6.21         4.60         3.48 
TCGA-44-5645 TCGA-44-6144 TCGA-44-6145 TCGA-44-6146 TCGA-44-6147 TCGA-44-6148 
        6.84         0.30         3.35         9.93         7.76         3.12 
TCGA-44-6774 TCGA-44-6775 TCGA-44-6776 TCGA-44-6777 TCGA-44-6778 TCGA-44-6779 
        5.42         2.70        63.72        32.45        36.49        16.41 
TCGA-49-4486 TCGA-49-4487 TCGA-49-4488 TCGA-49-4490 TCGA-49-4494 TCGA-49-4501 
       76.21        28.11        28.57        12.66        35.54        46.72 
TCGA-49-4505 TCGA-49-4506 TCGA-49-4507 TCGA-49-4510 TCGA-49-4512 TCGA-49-4514 
       14.07        32.84         8.81        29.46        29.75        43.20 
TCGA-49-6742 TCGA-49-6743 TCGA-49-6744 TCGA-49-6745 TCGA-50-5044 TCGA-50-5045 
       15.02        12.13        12.99         4.93        20.48        71.47 
TCGA-50-5049 TCGA-50-5051 TCGA-50-5055 TCGA-50-5066 TCGA-50-5068 TCGA-50-5072 
       48.82        14.96        25.81         9.76        49.28         8.05 
TCGA-50-5930 TCGA-50-5931 TCGA-50-5932 TCGA-50-5933 TCGA-50-5935 TCGA-50-5936 
        9.27         8.78        35.87        77.88        21.47         8.45 
TCGA-50-5939 TCGA-50-5941 TCGA-50-5942 TCGA-50-5944 TCGA-50-5946 TCGA-50-6590 
       15.12         9.37         4.44        12.26        11.47        42.31 
TCGA-50-6591 TCGA-50-6592 TCGA-50-6593 TCGA-50-6594 TCGA-50-6595 TCGA-50-6597 
        3.88        25.51        11.05        12.16         6.21        33.37 
TCGA-55-1592 TCGA-55-1594 TCGA-55-1595 TCGA-55-1596 TCGA-55-5899 TCGA-55-6543 
       23.05        38.73        48.62        45.17         2.86         0.07 
TCGA-55-6642 TCGA-55-6712 TCGA-64-1676 TCGA-64-1677 TCGA-64-1678 TCGA-64-1680 
       32.61         0.79        56.81        20.65        39.09        37.02 
TCGA-64-5774 TCGA-64-5775 TCGA-64-5778 TCGA-64-5779 TCGA-64-5815 TCGA-67-3770 
       83.84         0.10        30.44        16.67         7.33         0.99 
TCGA-67-3771 TCGA-67-3772 TCGA-67-3773 TCGA-67-3774 TCGA-67-6215 TCGA-67-6216 
        1.97         0.59         2.04         0.59         0.89         0.69 
TCGA-71-6725 TCGA-73-4658 TCGA-73-4659 TCGA-73-4662 TCGA-73-4666 TCGA-73-4668 
        2.01        52.57        23.38        29.95        20.28        15.35 
TCGA-73-4670 TCGA-73-4675 TCGA-73-4676 TCGA-73-4677 TCGA-91-6828 TCGA-91-6829 
        0.46         1.32         4.01         1.25         1.22        41.33 
TCGA-91-6831 TCGA-91-6835 TCGA-91-6836 
        1.28         1.15         0.36 

  ST6GALNAC3 MUTATED ST6GALNAC3 WILD-TYPE 
                9.96                 0.07 
  ST6GALNAC3 MUTATED ST6GALNAC3 WILD-TYPE 
               39.52                85.32 
  ST6GALNAC3 MUTATED ST6GALNAC3 WILD-TYPE 
              15.355               13.150 
[1] "10.0 - 39.5 (15.4)" "0.1 - 85.3 (13.2)" 
          TCGA-05-4249           TCGA-05-4250           TCGA-05-4382 
"ST6GALNAC3 WILD-TYPE" "ST6GALNAC3 WILD-TYPE"   "ST6GALNAC3 MUTATED" 
          TCGA-05-4384           TCGA-05-4390           TCGA-05-4396 
"ST6GALNAC3 WILD-TYPE"   "ST6GALNAC3 MUTATED"   "ST6GALNAC3 MUTATED" 
          TCGA-05-4397           TCGA-05-4398           TCGA-05-4402 
"ST6GALNAC3 WILD-TYPE" "ST6GALNAC3 WILD-TYPE" "ST6GALNAC3 WILD-TYPE" 
          TCGA-05-4405           TCGA-05-4415           TCGA-05-4417 
"ST6GALNAC3 WILD-TYPE" "ST6GALNAC3 WILD-TYPE"   "ST6GALNAC3 MUTATED" 
          TCGA-05-4418           TCGA-05-4420           TCGA-05-4424 
"ST6GALNAC3 WILD-TYPE" "ST6GALNAC3 WILD-TYPE" "ST6GALNAC3 WILD-TYPE" 
          TCGA-05-4426           TCGA-05-4427           TCGA-05-4430 
"ST6GALNAC3 WILD-TYPE" "ST6GALNAC3 WILD-TYPE" "ST6GALNAC3 WILD-TYPE" 
          TCGA-05-4432           TCGA-05-4433           TCGA-05-4434 
"ST6GALNAC3 WILD-TYPE" "ST6GALNAC3 WILD-TYPE" "ST6GALNAC3 WILD-TYPE" 
          TCGA-05-5420           TCGA-05-5423           TCGA-05-5425 
"ST6GALNAC3 WILD-TYPE" "ST6GALNAC3 WILD-TYPE" "ST6GALNAC3 WILD-TYPE" 
          TCGA-05-5429           TCGA-05-5715           TCGA-35-3615 
"ST6GALNAC3 WILD-TYPE" "ST6GALNAC3 WILD-TYPE" "ST6GALNAC3 WILD-TYPE" 
          TCGA-35-4122           TCGA-35-4123           TCGA-35-5375 
"ST6GALNAC3 WILD-TYPE" "ST6GALNAC3 WILD-TYPE" "ST6GALNAC3 WILD-TYPE" 
          TCGA-38-4625           TCGA-38-4626           TCGA-38-4627 
"ST6GALNAC3 WILD-TYPE" "ST6GALNAC3 WILD-TYPE" "ST6GALNAC3 WILD-TYPE" 
          TCGA-38-4628           TCGA-38-4629           TCGA-38-4630 
"ST6GALNAC3 WILD-TYPE" "ST6GALNAC3 WILD-TYPE" "ST6GALNAC3 WILD-TYPE" 
          TCGA-38-4631           TCGA-38-4632           TCGA-38-6178 
"ST6GALNAC3 WILD-TYPE" "ST6GALNAC3 WILD-TYPE" "ST6GALNAC3 WILD-TYPE" 
          TCGA-44-2655           TCGA-44-2656           TCGA-44-2657 
"ST6GALNAC3 WILD-TYPE" "ST6GALNAC3 WILD-TYPE" "ST6GALNAC3 WILD-TYPE" 
          TCGA-44-2659           TCGA-44-2661           TCGA-44-2662 
"ST6GALNAC3 WILD-TYPE" "ST6GALNAC3 WILD-TYPE"   "ST6GALNAC3 MUTATED" 
          TCGA-44-2665           TCGA-44-2666           TCGA-44-2668 
"ST6GALNAC3 WILD-TYPE" "ST6GALNAC3 WILD-TYPE" "ST6GALNAC3 WILD-TYPE" 
          TCGA-44-3396           TCGA-44-3398           TCGA-44-3918 
  "ST6GALNAC3 MUTATED" "ST6GALNAC3 WILD-TYPE" "ST6GALNAC3 WILD-TYPE" 
          TCGA-44-3919           TCGA-44-4112           TCGA-44-5643 
"ST6GALNAC3 WILD-TYPE" "ST6GALNAC3 WILD-TYPE" "ST6GALNAC3 WILD-TYPE" 
          TCGA-44-5645           TCGA-44-6144           TCGA-44-6145 
"ST6GALNAC3 WILD-TYPE" "ST6GALNAC3 WILD-TYPE" "ST6GALNAC3 WILD-TYPE" 
          TCGA-44-6146           TCGA-44-6147           TCGA-44-6148 
"ST6GALNAC3 WILD-TYPE" "ST6GALNAC3 WILD-TYPE" "ST6GALNAC3 WILD-TYPE" 
          TCGA-44-6774           TCGA-44-6775           TCGA-44-6776 
"ST6GALNAC3 WILD-TYPE" "ST6GALNAC3 WILD-TYPE" "ST6GALNAC3 WILD-TYPE" 
          TCGA-44-6777           TCGA-44-6778           TCGA-44-6779 
"ST6GALNAC3 WILD-TYPE" "ST6GALNAC3 WILD-TYPE" "ST6GALNAC3 WILD-TYPE" 
          TCGA-49-4486           TCGA-49-4487           TCGA-49-4488 
"ST6GALNAC3 WILD-TYPE" "ST6GALNAC3 WILD-TYPE" "ST6GALNAC3 WILD-TYPE" 
          TCGA-49-4490           TCGA-49-4494           TCGA-49-4501 
"ST6GALNAC3 WILD-TYPE" "ST6GALNAC3 WILD-TYPE" "ST6GALNAC3 WILD-TYPE" 
          TCGA-49-4505           TCGA-49-4506           TCGA-49-4507 
"ST6GALNAC3 WILD-TYPE" "ST6GALNAC3 WILD-TYPE" "ST6GALNAC3 WILD-TYPE" 
          TCGA-49-4510           TCGA-49-4512           TCGA-49-4514 
"ST6GALNAC3 WILD-TYPE" "ST6GALNAC3 WILD-TYPE" "ST6GALNAC3 WILD-TYPE" 
          TCGA-49-6742           TCGA-49-6743           TCGA-49-6744 
"ST6GALNAC3 WILD-TYPE" "ST6GALNAC3 WILD-TYPE" "ST6GALNAC3 WILD-TYPE" 
          TCGA-49-6745           TCGA-50-5044           TCGA-50-5045 
"ST6GALNAC3 WILD-TYPE" "ST6GALNAC3 WILD-TYPE" "ST6GALNAC3 WILD-TYPE" 
          TCGA-50-5049           TCGA-50-5051           TCGA-50-5055 
"ST6GALNAC3 WILD-TYPE" "ST6GALNAC3 WILD-TYPE" "ST6GALNAC3 WILD-TYPE" 
          TCGA-50-5066           TCGA-50-5068           TCGA-50-5072 
"ST6GALNAC3 WILD-TYPE" "ST6GALNAC3 WILD-TYPE" "ST6GALNAC3 WILD-TYPE" 
          TCGA-50-5930           TCGA-50-5931           TCGA-50-5932 
"ST6GALNAC3 WILD-TYPE" "ST6GALNAC3 WILD-TYPE" "ST6GALNAC3 WILD-TYPE" 
          TCGA-50-5933           TCGA-50-5935           TCGA-50-5936 
"ST6GALNAC3 WILD-TYPE" "ST6GALNAC3 WILD-TYPE" "ST6GALNAC3 WILD-TYPE" 
          TCGA-50-5939           TCGA-50-5941           TCGA-50-5942 
"ST6GALNAC3 WILD-TYPE" "ST6GALNAC3 WILD-TYPE" "ST6GALNAC3 WILD-TYPE" 
          TCGA-50-5944           TCGA-50-5946           TCGA-50-6590 
"ST6GALNAC3 WILD-TYPE" "ST6GALNAC3 WILD-TYPE" "ST6GALNAC3 WILD-TYPE" 
          TCGA-50-6591           TCGA-50-6592           TCGA-50-6593 
"ST6GALNAC3 WILD-TYPE" "ST6GALNAC3 WILD-TYPE" "ST6GALNAC3 WILD-TYPE" 
          TCGA-50-6594           TCGA-50-6595           TCGA-50-6597 
"ST6GALNAC3 WILD-TYPE" "ST6GALNAC3 WILD-TYPE" "ST6GALNAC3 WILD-TYPE" 
          TCGA-55-1592           TCGA-55-1594           TCGA-55-1595 
"ST6GALNAC3 WILD-TYPE" "ST6GALNAC3 WILD-TYPE" "ST6GALNAC3 WILD-TYPE" 
          TCGA-55-1596           TCGA-55-5899           TCGA-55-6543 
"ST6GALNAC3 WILD-TYPE" "ST6GALNAC3 WILD-TYPE" "ST6GALNAC3 WILD-TYPE" 
          TCGA-55-6642           TCGA-55-6712           TCGA-64-1676 
"ST6GALNAC3 WILD-TYPE" "ST6GALNAC3 WILD-TYPE" "ST6GALNAC3 WILD-TYPE" 
          TCGA-64-1677           TCGA-64-1678           TCGA-64-1680 
"ST6GALNAC3 WILD-TYPE" "ST6GALNAC3 WILD-TYPE" "ST6GALNAC3 WILD-TYPE" 
          TCGA-64-5774           TCGA-64-5775           TCGA-64-5778 
"ST6GALNAC3 WILD-TYPE" "ST6GALNAC3 WILD-TYPE" "ST6GALNAC3 WILD-TYPE" 
          TCGA-64-5779           TCGA-64-5781           TCGA-64-5815 
"ST6GALNAC3 WILD-TYPE"   "ST6GALNAC3 MUTATED" "ST6GALNAC3 WILD-TYPE" 
          TCGA-67-3770           TCGA-67-3771           TCGA-67-3772 
"ST6GALNAC3 WILD-TYPE" "ST6GALNAC3 WILD-TYPE" "ST6GALNAC3 WILD-TYPE" 
          TCGA-67-3773           TCGA-67-3774           TCGA-67-6215 
"ST6GALNAC3 WILD-TYPE" "ST6GALNAC3 WILD-TYPE" "ST6GALNAC3 WILD-TYPE" 
          TCGA-67-6216           TCGA-67-6217           TCGA-71-6725 
"ST6GALNAC3 WILD-TYPE"   "ST6GALNAC3 MUTATED" "ST6GALNAC3 WILD-TYPE" 
          TCGA-73-4658           TCGA-73-4659           TCGA-73-4662 
"ST6GALNAC3 WILD-TYPE" "ST6GALNAC3 WILD-TYPE" "ST6GALNAC3 WILD-TYPE" 
          TCGA-73-4666           TCGA-73-4668           TCGA-73-4670 
"ST6GALNAC3 WILD-TYPE" "ST6GALNAC3 WILD-TYPE" "ST6GALNAC3 WILD-TYPE" 
          TCGA-73-4675           TCGA-73-4676           TCGA-73-4677 
"ST6GALNAC3 WILD-TYPE" "ST6GALNAC3 WILD-TYPE" "ST6GALNAC3 WILD-TYPE" 
          TCGA-91-6828           TCGA-91-6829           TCGA-91-6831 
"ST6GALNAC3 WILD-TYPE" "ST6GALNAC3 WILD-TYPE" "ST6GALNAC3 WILD-TYPE" 
          TCGA-91-6835           TCGA-91-6836 
"ST6GALNAC3 WILD-TYPE" "ST6GALNAC3 WILD-TYPE" 
          TCGA-05-4249           TCGA-05-4250           TCGA-05-4382 
"ST6GALNAC3 WILD-TYPE" "ST6GALNAC3 WILD-TYPE"   "ST6GALNAC3 MUTATED" 
          TCGA-05-4384           TCGA-05-4390           TCGA-05-4396 
"ST6GALNAC3 WILD-TYPE"   "ST6GALNAC3 MUTATED"   "ST6GALNAC3 MUTATED" 
          TCGA-05-4397           TCGA-05-4398           TCGA-05-4402 
"ST6GALNAC3 WILD-TYPE" "ST6GALNAC3 WILD-TYPE" "ST6GALNAC3 WILD-TYPE" 
          TCGA-05-4405           TCGA-05-4415           TCGA-05-4417 
"ST6GALNAC3 WILD-TYPE" "ST6GALNAC3 WILD-TYPE"   "ST6GALNAC3 MUTATED" 
          TCGA-05-4418           TCGA-05-4420           TCGA-05-4424 
"ST6GALNAC3 WILD-TYPE" "ST6GALNAC3 WILD-TYPE" "ST6GALNAC3 WILD-TYPE" 
          TCGA-05-4426           TCGA-05-4427           TCGA-05-4430 
"ST6GALNAC3 WILD-TYPE" "ST6GALNAC3 WILD-TYPE" "ST6GALNAC3 WILD-TYPE" 
          TCGA-05-4432           TCGA-05-4433           TCGA-05-4434 
"ST6GALNAC3 WILD-TYPE" "ST6GALNAC3 WILD-TYPE" "ST6GALNAC3 WILD-TYPE" 
          TCGA-05-5420           TCGA-05-5423           TCGA-05-5425 
"ST6GALNAC3 WILD-TYPE" "ST6GALNAC3 WILD-TYPE" "ST6GALNAC3 WILD-TYPE" 
          TCGA-05-5429           TCGA-05-5715           TCGA-35-3615 
"ST6GALNAC3 WILD-TYPE" "ST6GALNAC3 WILD-TYPE" "ST6GALNAC3 WILD-TYPE" 
          TCGA-35-4122           TCGA-35-4123           TCGA-35-5375 
"ST6GALNAC3 WILD-TYPE" "ST6GALNAC3 WILD-TYPE" "ST6GALNAC3 WILD-TYPE" 
          TCGA-38-4625           TCGA-38-4626           TCGA-38-4627 
"ST6GALNAC3 WILD-TYPE" "ST6GALNAC3 WILD-TYPE" "ST6GALNAC3 WILD-TYPE" 
          TCGA-38-4628           TCGA-38-4629           TCGA-38-4630 
"ST6GALNAC3 WILD-TYPE" "ST6GALNAC3 WILD-TYPE" "ST6GALNAC3 WILD-TYPE" 
          TCGA-38-4631           TCGA-38-4632           TCGA-38-6178 
"ST6GALNAC3 WILD-TYPE" "ST6GALNAC3 WILD-TYPE" "ST6GALNAC3 WILD-TYPE" 
          TCGA-44-2655           TCGA-44-2656           TCGA-44-2657 
"ST6GALNAC3 WILD-TYPE" "ST6GALNAC3 WILD-TYPE" "ST6GALNAC3 WILD-TYPE" 
          TCGA-44-2659           TCGA-44-2661           TCGA-44-2662 
"ST6GALNAC3 WILD-TYPE" "ST6GALNAC3 WILD-TYPE"   "ST6GALNAC3 MUTATED" 
          TCGA-44-2665           TCGA-44-2666           TCGA-44-2668 
"ST6GALNAC3 WILD-TYPE" "ST6GALNAC3 WILD-TYPE" "ST6GALNAC3 WILD-TYPE" 
          TCGA-44-3396           TCGA-44-3398           TCGA-44-3918 
  "ST6GALNAC3 MUTATED" "ST6GALNAC3 WILD-TYPE" "ST6GALNAC3 WILD-TYPE" 
          TCGA-44-3919           TCGA-44-4112           TCGA-44-5643 
"ST6GALNAC3 WILD-TYPE" "ST6GALNAC3 WILD-TYPE" "ST6GALNAC3 WILD-TYPE" 
          TCGA-44-5645           TCGA-44-6144           TCGA-44-6145 
"ST6GALNAC3 WILD-TYPE" "ST6GALNAC3 WILD-TYPE" "ST6GALNAC3 WILD-TYPE" 
          TCGA-44-6146           TCGA-44-6147           TCGA-44-6148 
"ST6GALNAC3 WILD-TYPE" "ST6GALNAC3 WILD-TYPE" "ST6GALNAC3 WILD-TYPE" 
          TCGA-44-6774           TCGA-44-6775           TCGA-44-6776 
"ST6GALNAC3 WILD-TYPE" "ST6GALNAC3 WILD-TYPE" "ST6GALNAC3 WILD-TYPE" 
          TCGA-44-6777           TCGA-44-6778           TCGA-44-6779 
"ST6GALNAC3 WILD-TYPE" "ST6GALNAC3 WILD-TYPE" "ST6GALNAC3 WILD-TYPE" 
          TCGA-49-4486           TCGA-49-4487           TCGA-49-4488 
"ST6GALNAC3 WILD-TYPE" "ST6GALNAC3 WILD-TYPE" "ST6GALNAC3 WILD-TYPE" 
          TCGA-49-4490           TCGA-49-4494           TCGA-49-4501 
"ST6GALNAC3 WILD-TYPE" "ST6GALNAC3 WILD-TYPE" "ST6GALNAC3 WILD-TYPE" 
          TCGA-49-4505           TCGA-49-4506           TCGA-49-4507 
"ST6GALNAC3 WILD-TYPE" "ST6GALNAC3 WILD-TYPE" "ST6GALNAC3 WILD-TYPE" 
          TCGA-49-4510           TCGA-49-4512           TCGA-49-4514 
"ST6GALNAC3 WILD-TYPE" "ST6GALNAC3 WILD-TYPE" "ST6GALNAC3 WILD-TYPE" 
          TCGA-49-6742           TCGA-49-6743           TCGA-49-6744 
"ST6GALNAC3 WILD-TYPE" "ST6GALNAC3 WILD-TYPE" "ST6GALNAC3 WILD-TYPE" 
          TCGA-49-6745           TCGA-50-5044           TCGA-50-5045 
"ST6GALNAC3 WILD-TYPE" "ST6GALNAC3 WILD-TYPE" "ST6GALNAC3 WILD-TYPE" 
          TCGA-50-5049           TCGA-50-5051           TCGA-50-5055 
"ST6GALNAC3 WILD-TYPE" "ST6GALNAC3 WILD-TYPE" "ST6GALNAC3 WILD-TYPE" 
          TCGA-50-5066           TCGA-50-5068           TCGA-50-5072 
"ST6GALNAC3 WILD-TYPE" "ST6GALNAC3 WILD-TYPE" "ST6GALNAC3 WILD-TYPE" 
          TCGA-50-5930           TCGA-50-5931           TCGA-50-5932 
"ST6GALNAC3 WILD-TYPE" "ST6GALNAC3 WILD-TYPE" "ST6GALNAC3 WILD-TYPE" 
          TCGA-50-5933           TCGA-50-5935           TCGA-50-5936 
"ST6GALNAC3 WILD-TYPE" "ST6GALNAC3 WILD-TYPE" "ST6GALNAC3 WILD-TYPE" 
          TCGA-50-5939           TCGA-50-5941           TCGA-50-5942 
"ST6GALNAC3 WILD-TYPE" "ST6GALNAC3 WILD-TYPE" "ST6GALNAC3 WILD-TYPE" 
          TCGA-50-5944           TCGA-50-5946           TCGA-50-6590 
"ST6GALNAC3 WILD-TYPE" "ST6GALNAC3 WILD-TYPE" "ST6GALNAC3 WILD-TYPE" 
          TCGA-50-6591           TCGA-50-6592           TCGA-50-6593 
"ST6GALNAC3 WILD-TYPE" "ST6GALNAC3 WILD-TYPE" "ST6GALNAC3 WILD-TYPE" 
          TCGA-50-6594           TCGA-50-6595           TCGA-50-6597 
"ST6GALNAC3 WILD-TYPE" "ST6GALNAC3 WILD-TYPE" "ST6GALNAC3 WILD-TYPE" 
          TCGA-55-1592           TCGA-55-1594           TCGA-55-1595 
"ST6GALNAC3 WILD-TYPE" "ST6GALNAC3 WILD-TYPE" "ST6GALNAC3 WILD-TYPE" 
          TCGA-55-1596           TCGA-55-5899           TCGA-55-6543 
"ST6GALNAC3 WILD-TYPE" "ST6GALNAC3 WILD-TYPE" "ST6GALNAC3 WILD-TYPE" 
          TCGA-55-6642           TCGA-55-6712           TCGA-64-1676 
"ST6GALNAC3 WILD-TYPE" "ST6GALNAC3 WILD-TYPE" "ST6GALNAC3 WILD-TYPE" 
          TCGA-64-1677           TCGA-64-1678           TCGA-64-1680 
"ST6GALNAC3 WILD-TYPE" "ST6GALNAC3 WILD-TYPE" "ST6GALNAC3 WILD-TYPE" 
          TCGA-64-5774           TCGA-64-5775           TCGA-64-5778 
"ST6GALNAC3 WILD-TYPE" "ST6GALNAC3 WILD-TYPE" "ST6GALNAC3 WILD-TYPE" 
          TCGA-64-5779           TCGA-64-5781           TCGA-64-5815 
"ST6GALNAC3 WILD-TYPE"   "ST6GALNAC3 MUTATED" "ST6GALNAC3 WILD-TYPE" 
          TCGA-67-3770           TCGA-67-3771           TCGA-67-3772 
"ST6GALNAC3 WILD-TYPE" "ST6GALNAC3 WILD-TYPE" "ST6GALNAC3 WILD-TYPE" 
          TCGA-67-3773           TCGA-67-3774           TCGA-67-6215 
"ST6GALNAC3 WILD-TYPE" "ST6GALNAC3 WILD-TYPE" "ST6GALNAC3 WILD-TYPE" 
          TCGA-67-6216           TCGA-67-6217           TCGA-71-6725 
"ST6GALNAC3 WILD-TYPE"   "ST6GALNAC3 MUTATED" "ST6GALNAC3 WILD-TYPE" 
          TCGA-73-4658           TCGA-73-4659           TCGA-73-4662 
"ST6GALNAC3 WILD-TYPE" "ST6GALNAC3 WILD-TYPE" "ST6GALNAC3 WILD-TYPE" 
          TCGA-73-4666           TCGA-73-4668           TCGA-73-4670 
"ST6GALNAC3 WILD-TYPE" "ST6GALNAC3 WILD-TYPE" "ST6GALNAC3 WILD-TYPE" 
          TCGA-73-4675           TCGA-73-4676           TCGA-73-4677 
"ST6GALNAC3 WILD-TYPE" "ST6GALNAC3 WILD-TYPE" "ST6GALNAC3 WILD-TYPE" 
          TCGA-91-6828           TCGA-91-6829           TCGA-91-6831 
"ST6GALNAC3 WILD-TYPE" "ST6GALNAC3 WILD-TYPE" "ST6GALNAC3 WILD-TYPE" 
          TCGA-91-6835           TCGA-91-6836 
"ST6GALNAC3 WILD-TYPE" "ST6GALNAC3 WILD-TYPE" 
          TCGA-05-4249           TCGA-05-4250           TCGA-05-4382 
"ST6GALNAC3 WILD-TYPE" "ST6GALNAC3 WILD-TYPE"   "ST6GALNAC3 MUTATED" 
          TCGA-05-4384           TCGA-05-4390           TCGA-05-4396 
"ST6GALNAC3 WILD-TYPE"   "ST6GALNAC3 MUTATED"   "ST6GALNAC3 MUTATED" 
          TCGA-05-4397           TCGA-05-4398           TCGA-05-4402 
"ST6GALNAC3 WILD-TYPE" "ST6GALNAC3 WILD-TYPE" "ST6GALNAC3 WILD-TYPE" 
          TCGA-05-4405           TCGA-05-4415           TCGA-05-4417 
"ST6GALNAC3 WILD-TYPE" "ST6GALNAC3 WILD-TYPE"   "ST6GALNAC3 MUTATED" 
          TCGA-05-4418           TCGA-05-4420           TCGA-05-4424 
"ST6GALNAC3 WILD-TYPE" "ST6GALNAC3 WILD-TYPE" "ST6GALNAC3 WILD-TYPE" 
          TCGA-05-4426           TCGA-05-4427           TCGA-05-4430 
"ST6GALNAC3 WILD-TYPE" "ST6GALNAC3 WILD-TYPE" "ST6GALNAC3 WILD-TYPE" 
          TCGA-05-4432           TCGA-05-4433           TCGA-05-4434 
"ST6GALNAC3 WILD-TYPE" "ST6GALNAC3 WILD-TYPE" "ST6GALNAC3 WILD-TYPE" 
          TCGA-05-5420           TCGA-05-5423           TCGA-05-5425 
"ST6GALNAC3 WILD-TYPE" "ST6GALNAC3 WILD-TYPE" "ST6GALNAC3 WILD-TYPE" 
          TCGA-05-5429           TCGA-05-5715           TCGA-35-3615 
"ST6GALNAC3 WILD-TYPE" "ST6GALNAC3 WILD-TYPE" "ST6GALNAC3 WILD-TYPE" 
          TCGA-35-4122           TCGA-35-4123           TCGA-35-5375 
"ST6GALNAC3 WILD-TYPE" "ST6GALNAC3 WILD-TYPE" "ST6GALNAC3 WILD-TYPE" 
          TCGA-38-4625           TCGA-38-4626           TCGA-38-4627 
"ST6GALNAC3 WILD-TYPE" "ST6GALNAC3 WILD-TYPE" "ST6GALNAC3 WILD-TYPE" 
          TCGA-38-4628           TCGA-38-4629           TCGA-38-4630 
"ST6GALNAC3 WILD-TYPE" "ST6GALNAC3 WILD-TYPE" "ST6GALNAC3 WILD-TYPE" 
          TCGA-38-4631           TCGA-38-4632           TCGA-38-6178 
"ST6GALNAC3 WILD-TYPE" "ST6GALNAC3 WILD-TYPE" "ST6GALNAC3 WILD-TYPE" 
          TCGA-44-2655           TCGA-44-2656           TCGA-44-2657 
"ST6GALNAC3 WILD-TYPE" "ST6GALNAC3 WILD-TYPE" "ST6GALNAC3 WILD-TYPE" 
          TCGA-44-2659           TCGA-44-2661           TCGA-44-2662 
"ST6GALNAC3 WILD-TYPE" "ST6GALNAC3 WILD-TYPE"   "ST6GALNAC3 MUTATED" 
          TCGA-44-2665           TCGA-44-2666           TCGA-44-2668 
"ST6GALNAC3 WILD-TYPE" "ST6GALNAC3 WILD-TYPE" "ST6GALNAC3 WILD-TYPE" 
          TCGA-44-3396           TCGA-44-3398           TCGA-44-3918 
  "ST6GALNAC3 MUTATED" "ST6GALNAC3 WILD-TYPE" "ST6GALNAC3 WILD-TYPE" 
          TCGA-44-3919           TCGA-44-4112           TCGA-44-5643 
"ST6GALNAC3 WILD-TYPE" "ST6GALNAC3 WILD-TYPE" "ST6GALNAC3 WILD-TYPE" 
          TCGA-44-5645           TCGA-44-6144           TCGA-44-6145 
"ST6GALNAC3 WILD-TYPE" "ST6GALNAC3 WILD-TYPE" "ST6GALNAC3 WILD-TYPE" 
          TCGA-44-6146           TCGA-44-6147           TCGA-44-6148 
"ST6GALNAC3 WILD-TYPE" "ST6GALNAC3 WILD-TYPE" "ST6GALNAC3 WILD-TYPE" 
          TCGA-44-6774           TCGA-44-6775           TCGA-44-6776 
"ST6GALNAC3 WILD-TYPE" "ST6GALNAC3 WILD-TYPE" "ST6GALNAC3 WILD-TYPE" 
          TCGA-44-6777           TCGA-44-6778           TCGA-44-6779 
"ST6GALNAC3 WILD-TYPE" "ST6GALNAC3 WILD-TYPE" "ST6GALNAC3 WILD-TYPE" 
          TCGA-49-4486           TCGA-49-4487           TCGA-49-4488 
"ST6GALNAC3 WILD-TYPE" "ST6GALNAC3 WILD-TYPE" "ST6GALNAC3 WILD-TYPE" 
          TCGA-49-4490           TCGA-49-4494           TCGA-49-4501 
"ST6GALNAC3 WILD-TYPE" "ST6GALNAC3 WILD-TYPE" "ST6GALNAC3 WILD-TYPE" 
          TCGA-49-4505           TCGA-49-4506           TCGA-49-4507 
"ST6GALNAC3 WILD-TYPE" "ST6GALNAC3 WILD-TYPE" "ST6GALNAC3 WILD-TYPE" 
          TCGA-49-4510           TCGA-49-4512           TCGA-49-4514 
"ST6GALNAC3 WILD-TYPE" "ST6GALNAC3 WILD-TYPE" "ST6GALNAC3 WILD-TYPE" 
          TCGA-49-6742           TCGA-49-6743           TCGA-49-6744 
"ST6GALNAC3 WILD-TYPE" "ST6GALNAC3 WILD-TYPE" "ST6GALNAC3 WILD-TYPE" 
          TCGA-49-6745           TCGA-50-5044           TCGA-50-5045 
"ST6GALNAC3 WILD-TYPE" "ST6GALNAC3 WILD-TYPE" "ST6GALNAC3 WILD-TYPE" 
          TCGA-50-5049           TCGA-50-5051           TCGA-50-5055 
"ST6GALNAC3 WILD-TYPE" "ST6GALNAC3 WILD-TYPE" "ST6GALNAC3 WILD-TYPE" 
          TCGA-50-5066           TCGA-50-5068           TCGA-50-5072 
"ST6GALNAC3 WILD-TYPE" "ST6GALNAC3 WILD-TYPE" "ST6GALNAC3 WILD-TYPE" 
          TCGA-50-5930           TCGA-50-5931           TCGA-50-5932 
"ST6GALNAC3 WILD-TYPE" "ST6GALNAC3 WILD-TYPE" "ST6GALNAC3 WILD-TYPE" 
          TCGA-50-5933           TCGA-50-5935           TCGA-50-5936 
"ST6GALNAC3 WILD-TYPE" "ST6GALNAC3 WILD-TYPE" "ST6GALNAC3 WILD-TYPE" 
          TCGA-50-5939           TCGA-50-5941           TCGA-50-5942 
"ST6GALNAC3 WILD-TYPE" "ST6GALNAC3 WILD-TYPE" "ST6GALNAC3 WILD-TYPE" 
          TCGA-50-5944           TCGA-50-5946           TCGA-50-6590 
"ST6GALNAC3 WILD-TYPE" "ST6GALNAC3 WILD-TYPE" "ST6GALNAC3 WILD-TYPE" 
          TCGA-50-6591           TCGA-50-6592           TCGA-50-6593 
"ST6GALNAC3 WILD-TYPE" "ST6GALNAC3 WILD-TYPE" "ST6GALNAC3 WILD-TYPE" 
          TCGA-50-6594           TCGA-50-6595           TCGA-50-6597 
"ST6GALNAC3 WILD-TYPE" "ST6GALNAC3 WILD-TYPE" "ST6GALNAC3 WILD-TYPE" 
          TCGA-55-1592           TCGA-55-1594           TCGA-55-1595 
"ST6GALNAC3 WILD-TYPE" "ST6GALNAC3 WILD-TYPE" "ST6GALNAC3 WILD-TYPE" 
          TCGA-55-1596           TCGA-55-5899           TCGA-55-6543 
"ST6GALNAC3 WILD-TYPE" "ST6GALNAC3 WILD-TYPE" "ST6GALNAC3 WILD-TYPE" 
          TCGA-55-6642           TCGA-55-6712           TCGA-64-1676 
"ST6GALNAC3 WILD-TYPE" "ST6GALNAC3 WILD-TYPE" "ST6GALNAC3 WILD-TYPE" 
          TCGA-64-1677           TCGA-64-1678           TCGA-64-1680 
"ST6GALNAC3 WILD-TYPE" "ST6GALNAC3 WILD-TYPE" "ST6GALNAC3 WILD-TYPE" 
          TCGA-64-5774           TCGA-64-5775           TCGA-64-5778 
"ST6GALNAC3 WILD-TYPE" "ST6GALNAC3 WILD-TYPE" "ST6GALNAC3 WILD-TYPE" 
          TCGA-64-5779           TCGA-64-5781           TCGA-64-5815 
"ST6GALNAC3 WILD-TYPE"   "ST6GALNAC3 MUTATED" "ST6GALNAC3 WILD-TYPE" 
          TCGA-67-3770           TCGA-67-3771           TCGA-67-3772 
"ST6GALNAC3 WILD-TYPE" "ST6GALNAC3 WILD-TYPE" "ST6GALNAC3 WILD-TYPE" 
          TCGA-67-3773           TCGA-67-3774           TCGA-67-6215 
"ST6GALNAC3 WILD-TYPE" "ST6GALNAC3 WILD-TYPE" "ST6GALNAC3 WILD-TYPE" 
          TCGA-67-6216           TCGA-67-6217           TCGA-71-6725 
"ST6GALNAC3 WILD-TYPE"   "ST6GALNAC3 MUTATED" "ST6GALNAC3 WILD-TYPE" 
          TCGA-73-4658           TCGA-73-4659           TCGA-73-4662 
"ST6GALNAC3 WILD-TYPE" "ST6GALNAC3 WILD-TYPE" "ST6GALNAC3 WILD-TYPE" 
          TCGA-73-4666           TCGA-73-4668           TCGA-73-4670 
"ST6GALNAC3 WILD-TYPE" "ST6GALNAC3 WILD-TYPE" "ST6GALNAC3 WILD-TYPE" 
          TCGA-73-4675           TCGA-73-4676           TCGA-73-4677 
"ST6GALNAC3 WILD-TYPE" "ST6GALNAC3 WILD-TYPE" "ST6GALNAC3 WILD-TYPE" 
          TCGA-91-6828           TCGA-91-6829           TCGA-91-6831 
"ST6GALNAC3 WILD-TYPE" "ST6GALNAC3 WILD-TYPE" "ST6GALNAC3 WILD-TYPE" 
          TCGA-91-6835           TCGA-91-6836 
"ST6GALNAC3 WILD-TYPE" "ST6GALNAC3 WILD-TYPE" 
[1] "hr=" "2.5"
D182V2, continuous
D182V3, binary
[1] "tbl2"
                      cls
clus                   [,1] [,2]
  ST6GALNAC3 MUTATED      5    3
  ST6GALNAC3 WILD-TYPE   88   76
        clus
vv       ST6GALNAC3 MUTATED ST6GALNAC3 WILD-TYPE
  FEMALE                  5                   88
  MALE                    3                   76
D182V4, continuous
D182V5, multiclass
D182V6, multiclass
    clus
vv   ST6GALNAC3 MUTATED ST6GALNAC3 WILD-TYPE
  T1                  0                   41
  T2                  7                  101
  T3                  0                   14
  T4                  1                    7
D182V7, multiclass
       clus
vv      ST6GALNAC3 MUTATED ST6GALNAC3 WILD-TYPE
  N0                     5                   90
  N1                     2                   35
  N2+N3                  1                   34
D182V8, multiclass
    clus
vv   ST6GALNAC3 MUTATED ST6GALNAC3 WILD-TYPE
  M0                  8                  129
  M1                  0                    9
  MX                  0                   22
D182V9, multiclass
     clus
vv    ST6GALNAC3 MUTATED ST6GALNAC3 WILD-TYPE
  I                    5                   83
  II                   1                   32
  III                  2                   37
  IV                   0                    9
D182V10, binary
[1] "tbl2"
                      cls
clus                   [,1] [,2]
  ST6GALNAC3 MUTATED      0    8
  ST6GALNAC3 WILD-TYPE   16  148
     clus
vv    ST6GALNAC3 MUTATED ST6GALNAC3 WILD-TYPE
  NO                   0                   16
  YES                  8                  148
D182V11, continuous
D182V12, continuous
D182V13, multiclass
                                             clus
vv                                            ST6GALNAC3 MUTATED
  CURRENT REFORMED SMOKER FOR < OR = 15 YEARS                  4
  CURRENT REFORMED SMOKER FOR > 15 YEARS                       3
  CURRENT SMOKER                                               1
  LIFELONG NON-SMOKER                                          0
                                             clus
vv                                            ST6GALNAC3 WILD-TYPE
  CURRENT REFORMED SMOKER FOR < OR = 15 YEARS                   58
  CURRENT REFORMED SMOKER FOR > 15 YEARS                        43
  CURRENT SMOKER                                                27
  LIFELONG NON-SMOKER                                           24
D182V14, continuous

Clustering(183) Variable = TKTL2 MUTATION ANALYSIS
D183V1, survival
                 sevent
clus2              0  1
  TKTL2 MUTATED    5  3
  TKTL2 WILD-TYPE 94 47
  TKTL2 MUTATED TKTL2 WILD-TYPE 
              8             141 
  TKTL2 MUTATED TKTL2 WILD-TYPE 
              3              47 
$`TKTL2 MUTATED`
TCGA-05-4427 TCGA-38-4625 TCGA-38-4629 TCGA-44-2656 TCGA-44-2659 TCGA-44-4112 
       26.01        47.61        28.37        19.10        17.39         4.60 
TCGA-50-5933 TCGA-50-6594 
       77.88        12.16 

$`TKTL2 WILD-TYPE`
TCGA-05-4249 TCGA-05-4250 TCGA-05-4382 TCGA-05-4384 TCGA-05-4390 TCGA-05-4396 
       38.07         3.98        19.92        14.01        37.02         9.96 
TCGA-05-4397 TCGA-05-4398 TCGA-05-4402 TCGA-05-4405 TCGA-05-4415 TCGA-05-4417 
       24.03        47.05         8.02        20.05         2.96        14.93 
TCGA-05-4418 TCGA-05-4420 TCGA-05-4424 TCGA-05-4426 TCGA-05-4430 TCGA-05-4432 
        8.98        29.95        30.02        26.01        25.02        25.02 
TCGA-05-4433 TCGA-05-4434 TCGA-05-5420 TCGA-05-5423 TCGA-05-5425 TCGA-05-5429 
       24.00        15.02         1.02         4.96         2.96         0.99 
TCGA-05-5715 TCGA-35-3615 TCGA-35-4122 TCGA-35-4123 TCGA-35-5375 TCGA-38-4626 
        2.04         0.46         7.36         5.95         8.68        85.32 
TCGA-38-4627 TCGA-38-4628 TCGA-38-4630 TCGA-38-4631 TCGA-38-4632 TCGA-38-6178 
       37.71        49.02        35.28        11.64        44.61         5.19 
TCGA-44-2655 TCGA-44-2657 TCGA-44-2661 TCGA-44-2662 TCGA-44-2665 TCGA-44-2666 
       18.87        13.15         3.39        15.78        13.15         3.19 
TCGA-44-2668 TCGA-44-3396 TCGA-44-3398 TCGA-44-3918 TCGA-44-3919 TCGA-44-5643 
        8.09        10.22         8.32         6.44         6.21         3.48 
TCGA-44-5645 TCGA-44-6144 TCGA-44-6145 TCGA-44-6146 TCGA-44-6147 TCGA-44-6148 
        6.84         0.30         3.35         9.93         7.76         3.12 
TCGA-44-6774 TCGA-44-6775 TCGA-44-6776 TCGA-44-6777 TCGA-44-6778 TCGA-44-6779 
        5.42         2.70        63.72        32.45        36.49        16.41 
TCGA-49-4486 TCGA-49-4487 TCGA-49-4488 TCGA-49-4490 TCGA-49-4494 TCGA-49-4501 
       76.21        28.11        28.57        12.66        35.54        46.72 
TCGA-49-4505 TCGA-49-4506 TCGA-49-4507 TCGA-49-4510 TCGA-49-4512 TCGA-49-4514 
       14.07        32.84         8.81        29.46        29.75        43.20 
TCGA-49-6742 TCGA-49-6743 TCGA-49-6744 TCGA-49-6745 TCGA-50-5044 TCGA-50-5045 
       15.02        12.13        12.99         4.93        20.48        71.47 
TCGA-50-5049 TCGA-50-5051 TCGA-50-5055 TCGA-50-5066 TCGA-50-5068 TCGA-50-5072 
       48.82        14.96        25.81         9.76        49.28         8.05 
TCGA-50-5930 TCGA-50-5931 TCGA-50-5932 TCGA-50-5935 TCGA-50-5936 TCGA-50-5939 
        9.27         8.78        35.87        21.47         8.45        15.12 
TCGA-50-5941 TCGA-50-5942 TCGA-50-5944 TCGA-50-5946 TCGA-50-6590 TCGA-50-6591 
        9.37         4.44        12.26        11.47        42.31         3.88 
TCGA-50-6592 TCGA-50-6593 TCGA-50-6595 TCGA-50-6597 TCGA-55-1592 TCGA-55-1594 
       25.51        11.05         6.21        33.37        23.05        38.73 
TCGA-55-1595 TCGA-55-1596 TCGA-55-5899 TCGA-55-6543 TCGA-55-6642 TCGA-55-6712 
       48.62        45.17         2.86         0.07        32.61         0.79 
TCGA-64-1676 TCGA-64-1677 TCGA-64-1678 TCGA-64-1680 TCGA-64-5774 TCGA-64-5775 
       56.81        20.65        39.09        37.02        83.84         0.10 
TCGA-64-5778 TCGA-64-5779 TCGA-64-5781 TCGA-64-5815 TCGA-67-3770 TCGA-67-3771 
       30.44        16.67        39.52         7.33         0.99         1.97 
TCGA-67-3772 TCGA-67-3773 TCGA-67-3774 TCGA-67-6215 TCGA-67-6216 TCGA-67-6217 
        0.59         2.04         0.59         0.89         0.69        13.87 
TCGA-71-6725 TCGA-73-4658 TCGA-73-4659 TCGA-73-4662 TCGA-73-4666 TCGA-73-4668 
        2.01        52.57        23.38        29.95        20.28        15.35 
TCGA-73-4670 TCGA-73-4675 TCGA-73-4676 TCGA-73-4677 TCGA-91-6828 TCGA-91-6829 
        0.46         1.32         4.01         1.25         1.22        41.33 
TCGA-91-6831 TCGA-91-6835 TCGA-91-6836 
        1.28         1.15         0.36 

  TKTL2 MUTATED TKTL2 WILD-TYPE 
           4.60            0.07 
  TKTL2 MUTATED TKTL2 WILD-TYPE 
          77.88           85.32 
  TKTL2 MUTATED TKTL2 WILD-TYPE 
         22.555          13.150 
[1] "4.6 - 77.9 (22.6)" "0.1 - 85.3 (13.2)"
     TCGA-05-4249      TCGA-05-4250      TCGA-05-4382      TCGA-05-4384 
"TKTL2 WILD-TYPE" "TKTL2 WILD-TYPE" "TKTL2 WILD-TYPE" "TKTL2 WILD-TYPE" 
     TCGA-05-4390      TCGA-05-4396      TCGA-05-4397      TCGA-05-4398 
"TKTL2 WILD-TYPE" "TKTL2 WILD-TYPE" "TKTL2 WILD-TYPE" "TKTL2 WILD-TYPE" 
     TCGA-05-4402      TCGA-05-4405      TCGA-05-4415      TCGA-05-4417 
"TKTL2 WILD-TYPE" "TKTL2 WILD-TYPE" "TKTL2 WILD-TYPE" "TKTL2 WILD-TYPE" 
     TCGA-05-4418      TCGA-05-4420      TCGA-05-4424      TCGA-05-4426 
"TKTL2 WILD-TYPE" "TKTL2 WILD-TYPE" "TKTL2 WILD-TYPE" "TKTL2 WILD-TYPE" 
     TCGA-05-4427      TCGA-05-4430      TCGA-05-4432      TCGA-05-4433 
  "TKTL2 MUTATED" "TKTL2 WILD-TYPE" "TKTL2 WILD-TYPE" "TKTL2 WILD-TYPE" 
     TCGA-05-4434      TCGA-05-5420      TCGA-05-5423      TCGA-05-5425 
"TKTL2 WILD-TYPE" "TKTL2 WILD-TYPE" "TKTL2 WILD-TYPE" "TKTL2 WILD-TYPE" 
     TCGA-05-5429      TCGA-05-5715      TCGA-35-3615      TCGA-35-4122 
"TKTL2 WILD-TYPE" "TKTL2 WILD-TYPE" "TKTL2 WILD-TYPE" "TKTL2 WILD-TYPE" 
     TCGA-35-4123      TCGA-35-5375      TCGA-38-4625      TCGA-38-4626 
"TKTL2 WILD-TYPE" "TKTL2 WILD-TYPE"   "TKTL2 MUTATED" "TKTL2 WILD-TYPE" 
     TCGA-38-4627      TCGA-38-4628      TCGA-38-4629      TCGA-38-4630 
"TKTL2 WILD-TYPE" "TKTL2 WILD-TYPE"   "TKTL2 MUTATED" "TKTL2 WILD-TYPE" 
     TCGA-38-4631      TCGA-38-4632      TCGA-38-6178      TCGA-44-2655 
"TKTL2 WILD-TYPE" "TKTL2 WILD-TYPE" "TKTL2 WILD-TYPE" "TKTL2 WILD-TYPE" 
     TCGA-44-2656      TCGA-44-2657      TCGA-44-2659      TCGA-44-2661 
  "TKTL2 MUTATED" "TKTL2 WILD-TYPE"   "TKTL2 MUTATED" "TKTL2 WILD-TYPE" 
     TCGA-44-2662      TCGA-44-2665      TCGA-44-2666      TCGA-44-2668 
"TKTL2 WILD-TYPE" "TKTL2 WILD-TYPE" "TKTL2 WILD-TYPE" "TKTL2 WILD-TYPE" 
     TCGA-44-3396      TCGA-44-3398      TCGA-44-3918      TCGA-44-3919 
"TKTL2 WILD-TYPE" "TKTL2 WILD-TYPE" "TKTL2 WILD-TYPE" "TKTL2 WILD-TYPE" 
     TCGA-44-4112      TCGA-44-5643      TCGA-44-5645      TCGA-44-6144 
  "TKTL2 MUTATED" "TKTL2 WILD-TYPE" "TKTL2 WILD-TYPE" "TKTL2 WILD-TYPE" 
     TCGA-44-6145      TCGA-44-6146      TCGA-44-6147      TCGA-44-6148 
"TKTL2 WILD-TYPE" "TKTL2 WILD-TYPE" "TKTL2 WILD-TYPE" "TKTL2 WILD-TYPE" 
     TCGA-44-6774      TCGA-44-6775      TCGA-44-6776      TCGA-44-6777 
"TKTL2 WILD-TYPE" "TKTL2 WILD-TYPE" "TKTL2 WILD-TYPE" "TKTL2 WILD-TYPE" 
     TCGA-44-6778      TCGA-44-6779      TCGA-49-4486      TCGA-49-4487 
"TKTL2 WILD-TYPE" "TKTL2 WILD-TYPE" "TKTL2 WILD-TYPE" "TKTL2 WILD-TYPE" 
     TCGA-49-4488      TCGA-49-4490      TCGA-49-4494      TCGA-49-4501 
"TKTL2 WILD-TYPE" "TKTL2 WILD-TYPE" "TKTL2 WILD-TYPE" "TKTL2 WILD-TYPE" 
     TCGA-49-4505      TCGA-49-4506      TCGA-49-4507      TCGA-49-4510 
"TKTL2 WILD-TYPE" "TKTL2 WILD-TYPE" "TKTL2 WILD-TYPE" "TKTL2 WILD-TYPE" 
     TCGA-49-4512      TCGA-49-4514      TCGA-49-6742      TCGA-49-6743 
"TKTL2 WILD-TYPE" "TKTL2 WILD-TYPE" "TKTL2 WILD-TYPE" "TKTL2 WILD-TYPE" 
     TCGA-49-6744      TCGA-49-6745      TCGA-50-5044      TCGA-50-5045 
"TKTL2 WILD-TYPE" "TKTL2 WILD-TYPE" "TKTL2 WILD-TYPE" "TKTL2 WILD-TYPE" 
     TCGA-50-5049      TCGA-50-5051      TCGA-50-5055      TCGA-50-5066 
"TKTL2 WILD-TYPE" "TKTL2 WILD-TYPE" "TKTL2 WILD-TYPE" "TKTL2 WILD-TYPE" 
     TCGA-50-5068      TCGA-50-5072      TCGA-50-5930      TCGA-50-5931 
"TKTL2 WILD-TYPE" "TKTL2 WILD-TYPE" "TKTL2 WILD-TYPE" "TKTL2 WILD-TYPE" 
     TCGA-50-5932      TCGA-50-5933      TCGA-50-5935      TCGA-50-5936 
"TKTL2 WILD-TYPE"   "TKTL2 MUTATED" "TKTL2 WILD-TYPE" "TKTL2 WILD-TYPE" 
     TCGA-50-5939      TCGA-50-5941      TCGA-50-5942      TCGA-50-5944 
"TKTL2 WILD-TYPE" "TKTL2 WILD-TYPE" "TKTL2 WILD-TYPE" "TKTL2 WILD-TYPE" 
     TCGA-50-5946      TCGA-50-6590      TCGA-50-6591      TCGA-50-6592 
"TKTL2 WILD-TYPE" "TKTL2 WILD-TYPE" "TKTL2 WILD-TYPE" "TKTL2 WILD-TYPE" 
     TCGA-50-6593      TCGA-50-6594      TCGA-50-6595      TCGA-50-6597 
"TKTL2 WILD-TYPE"   "TKTL2 MUTATED" "TKTL2 WILD-TYPE" "TKTL2 WILD-TYPE" 
     TCGA-55-1592      TCGA-55-1594      TCGA-55-1595      TCGA-55-1596 
"TKTL2 WILD-TYPE" "TKTL2 WILD-TYPE" "TKTL2 WILD-TYPE" "TKTL2 WILD-TYPE" 
     TCGA-55-5899      TCGA-55-6543      TCGA-55-6642      TCGA-55-6712 
"TKTL2 WILD-TYPE" "TKTL2 WILD-TYPE" "TKTL2 WILD-TYPE" "TKTL2 WILD-TYPE" 
     TCGA-64-1676      TCGA-64-1677      TCGA-64-1678      TCGA-64-1680 
"TKTL2 WILD-TYPE" "TKTL2 WILD-TYPE" "TKTL2 WILD-TYPE" "TKTL2 WILD-TYPE" 
     TCGA-64-5774      TCGA-64-5775      TCGA-64-5778      TCGA-64-5779 
"TKTL2 WILD-TYPE" "TKTL2 WILD-TYPE" "TKTL2 WILD-TYPE" "TKTL2 WILD-TYPE" 
     TCGA-64-5781      TCGA-64-5815      TCGA-67-3770      TCGA-67-3771 
"TKTL2 WILD-TYPE" "TKTL2 WILD-TYPE" "TKTL2 WILD-TYPE" "TKTL2 WILD-TYPE" 
     TCGA-67-3772      TCGA-67-3773      TCGA-67-3774      TCGA-67-6215 
"TKTL2 WILD-TYPE" "TKTL2 WILD-TYPE" "TKTL2 WILD-TYPE" "TKTL2 WILD-TYPE" 
     TCGA-67-6216      TCGA-67-6217      TCGA-71-6725      TCGA-73-4658 
"TKTL2 WILD-TYPE" "TKTL2 WILD-TYPE" "TKTL2 WILD-TYPE" "TKTL2 WILD-TYPE" 
     TCGA-73-4659      TCGA-73-4662      TCGA-73-4666      TCGA-73-4668 
"TKTL2 WILD-TYPE" "TKTL2 WILD-TYPE" "TKTL2 WILD-TYPE" "TKTL2 WILD-TYPE" 
     TCGA-73-4670      TCGA-73-4675      TCGA-73-4676      TCGA-73-4677 
"TKTL2 WILD-TYPE" "TKTL2 WILD-TYPE" "TKTL2 WILD-TYPE" "TKTL2 WILD-TYPE" 
     TCGA-91-6828      TCGA-91-6829      TCGA-91-6831      TCGA-91-6835 
"TKTL2 WILD-TYPE" "TKTL2 WILD-TYPE" "TKTL2 WILD-TYPE" "TKTL2 WILD-TYPE" 
     TCGA-91-6836 
"TKTL2 WILD-TYPE" 
     TCGA-05-4249      TCGA-05-4250      TCGA-05-4382      TCGA-05-4384 
"TKTL2 WILD-TYPE" "TKTL2 WILD-TYPE" "TKTL2 WILD-TYPE" "TKTL2 WILD-TYPE" 
     TCGA-05-4390      TCGA-05-4396      TCGA-05-4397      TCGA-05-4398 
"TKTL2 WILD-TYPE" "TKTL2 WILD-TYPE" "TKTL2 WILD-TYPE" "TKTL2 WILD-TYPE" 
     TCGA-05-4402      TCGA-05-4405      TCGA-05-4415      TCGA-05-4417 
"TKTL2 WILD-TYPE" "TKTL2 WILD-TYPE" "TKTL2 WILD-TYPE" "TKTL2 WILD-TYPE" 
     TCGA-05-4418      TCGA-05-4420      TCGA-05-4424      TCGA-05-4426 
"TKTL2 WILD-TYPE" "TKTL2 WILD-TYPE" "TKTL2 WILD-TYPE" "TKTL2 WILD-TYPE" 
     TCGA-05-4427      TCGA-05-4430      TCGA-05-4432      TCGA-05-4433 
  "TKTL2 MUTATED" "TKTL2 WILD-TYPE" "TKTL2 WILD-TYPE" "TKTL2 WILD-TYPE" 
     TCGA-05-4434      TCGA-05-5420      TCGA-05-5423      TCGA-05-5425 
"TKTL2 WILD-TYPE" "TKTL2 WILD-TYPE" "TKTL2 WILD-TYPE" "TKTL2 WILD-TYPE" 
     TCGA-05-5429      TCGA-05-5715      TCGA-35-3615      TCGA-35-4122 
"TKTL2 WILD-TYPE" "TKTL2 WILD-TYPE" "TKTL2 WILD-TYPE" "TKTL2 WILD-TYPE" 
     TCGA-35-4123      TCGA-35-5375      TCGA-38-4625      TCGA-38-4626 
"TKTL2 WILD-TYPE" "TKTL2 WILD-TYPE"   "TKTL2 MUTATED" "TKTL2 WILD-TYPE" 
     TCGA-38-4627      TCGA-38-4628      TCGA-38-4629      TCGA-38-4630 
"TKTL2 WILD-TYPE" "TKTL2 WILD-TYPE"   "TKTL2 MUTATED" "TKTL2 WILD-TYPE" 
     TCGA-38-4631      TCGA-38-4632      TCGA-38-6178      TCGA-44-2655 
"TKTL2 WILD-TYPE" "TKTL2 WILD-TYPE" "TKTL2 WILD-TYPE" "TKTL2 WILD-TYPE" 
     TCGA-44-2656      TCGA-44-2657      TCGA-44-2659      TCGA-44-2661 
  "TKTL2 MUTATED" "TKTL2 WILD-TYPE"   "TKTL2 MUTATED" "TKTL2 WILD-TYPE" 
     TCGA-44-2662      TCGA-44-2665      TCGA-44-2666      TCGA-44-2668 
"TKTL2 WILD-TYPE" "TKTL2 WILD-TYPE" "TKTL2 WILD-TYPE" "TKTL2 WILD-TYPE" 
     TCGA-44-3396      TCGA-44-3398      TCGA-44-3918      TCGA-44-3919 
"TKTL2 WILD-TYPE" "TKTL2 WILD-TYPE" "TKTL2 WILD-TYPE" "TKTL2 WILD-TYPE" 
     TCGA-44-4112      TCGA-44-5643      TCGA-44-5645      TCGA-44-6144 
  "TKTL2 MUTATED" "TKTL2 WILD-TYPE" "TKTL2 WILD-TYPE" "TKTL2 WILD-TYPE" 
     TCGA-44-6145      TCGA-44-6146      TCGA-44-6147      TCGA-44-6148 
"TKTL2 WILD-TYPE" "TKTL2 WILD-TYPE" "TKTL2 WILD-TYPE" "TKTL2 WILD-TYPE" 
     TCGA-44-6774      TCGA-44-6775      TCGA-44-6776      TCGA-44-6777 
"TKTL2 WILD-TYPE" "TKTL2 WILD-TYPE" "TKTL2 WILD-TYPE" "TKTL2 WILD-TYPE" 
     TCGA-44-6778      TCGA-44-6779      TCGA-49-4486      TCGA-49-4487 
"TKTL2 WILD-TYPE" "TKTL2 WILD-TYPE" "TKTL2 WILD-TYPE" "TKTL2 WILD-TYPE" 
     TCGA-49-4488      TCGA-49-4490      TCGA-49-4494      TCGA-49-4501 
"TKTL2 WILD-TYPE" "TKTL2 WILD-TYPE" "TKTL2 WILD-TYPE" "TKTL2 WILD-TYPE" 
     TCGA-49-4505      TCGA-49-4506      TCGA-49-4507      TCGA-49-4510 
"TKTL2 WILD-TYPE" "TKTL2 WILD-TYPE" "TKTL2 WILD-TYPE" "TKTL2 WILD-TYPE" 
     TCGA-49-4512      TCGA-49-4514      TCGA-49-6742      TCGA-49-6743 
"TKTL2 WILD-TYPE" "TKTL2 WILD-TYPE" "TKTL2 WILD-TYPE" "TKTL2 WILD-TYPE" 
     TCGA-49-6744      TCGA-49-6745      TCGA-50-5044      TCGA-50-5045 
"TKTL2 WILD-TYPE" "TKTL2 WILD-TYPE" "TKTL2 WILD-TYPE" "TKTL2 WILD-TYPE" 
     TCGA-50-5049      TCGA-50-5051      TCGA-50-5055      TCGA-50-5066 
"TKTL2 WILD-TYPE" "TKTL2 WILD-TYPE" "TKTL2 WILD-TYPE" "TKTL2 WILD-TYPE" 
     TCGA-50-5068      TCGA-50-5072      TCGA-50-5930      TCGA-50-5931 
"TKTL2 WILD-TYPE" "TKTL2 WILD-TYPE" "TKTL2 WILD-TYPE" "TKTL2 WILD-TYPE" 
     TCGA-50-5932      TCGA-50-5933      TCGA-50-5935      TCGA-50-5936 
"TKTL2 WILD-TYPE"   "TKTL2 MUTATED" "TKTL2 WILD-TYPE" "TKTL2 WILD-TYPE" 
     TCGA-50-5939      TCGA-50-5941      TCGA-50-5942      TCGA-50-5944 
"TKTL2 WILD-TYPE" "TKTL2 WILD-TYPE" "TKTL2 WILD-TYPE" "TKTL2 WILD-TYPE" 
     TCGA-50-5946      TCGA-50-6590      TCGA-50-6591      TCGA-50-6592 
"TKTL2 WILD-TYPE" "TKTL2 WILD-TYPE" "TKTL2 WILD-TYPE" "TKTL2 WILD-TYPE" 
     TCGA-50-6593      TCGA-50-6594      TCGA-50-6595      TCGA-50-6597 
"TKTL2 WILD-TYPE"   "TKTL2 MUTATED" "TKTL2 WILD-TYPE" "TKTL2 WILD-TYPE" 
     TCGA-55-1592      TCGA-55-1594      TCGA-55-1595      TCGA-55-1596 
"TKTL2 WILD-TYPE" "TKTL2 WILD-TYPE" "TKTL2 WILD-TYPE" "TKTL2 WILD-TYPE" 
     TCGA-55-5899      TCGA-55-6543      TCGA-55-6642      TCGA-55-6712 
"TKTL2 WILD-TYPE" "TKTL2 WILD-TYPE" "TKTL2 WILD-TYPE" "TKTL2 WILD-TYPE" 
     TCGA-64-1676      TCGA-64-1677      TCGA-64-1678      TCGA-64-1680 
"TKTL2 WILD-TYPE" "TKTL2 WILD-TYPE" "TKTL2 WILD-TYPE" "TKTL2 WILD-TYPE" 
     TCGA-64-5774      TCGA-64-5775      TCGA-64-5778      TCGA-64-5779 
"TKTL2 WILD-TYPE" "TKTL2 WILD-TYPE" "TKTL2 WILD-TYPE" "TKTL2 WILD-TYPE" 
     TCGA-64-5781      TCGA-64-5815      TCGA-67-3770      TCGA-67-3771 
"TKTL2 WILD-TYPE" "TKTL2 WILD-TYPE" "TKTL2 WILD-TYPE" "TKTL2 WILD-TYPE" 
     TCGA-67-3772      TCGA-67-3773      TCGA-67-3774      TCGA-67-6215 
"TKTL2 WILD-TYPE" "TKTL2 WILD-TYPE" "TKTL2 WILD-TYPE" "TKTL2 WILD-TYPE" 
     TCGA-67-6216      TCGA-67-6217      TCGA-71-6725      TCGA-73-4658 
"TKTL2 WILD-TYPE" "TKTL2 WILD-TYPE" "TKTL2 WILD-TYPE" "TKTL2 WILD-TYPE" 
     TCGA-73-4659      TCGA-73-4662      TCGA-73-4666      TCGA-73-4668 
"TKTL2 WILD-TYPE" "TKTL2 WILD-TYPE" "TKTL2 WILD-TYPE" "TKTL2 WILD-TYPE" 
     TCGA-73-4670      TCGA-73-4675      TCGA-73-4676      TCGA-73-4677 
"TKTL2 WILD-TYPE" "TKTL2 WILD-TYPE" "TKTL2 WILD-TYPE" "TKTL2 WILD-TYPE" 
     TCGA-91-6828      TCGA-91-6829      TCGA-91-6831      TCGA-91-6835 
"TKTL2 WILD-TYPE" "TKTL2 WILD-TYPE" "TKTL2 WILD-TYPE" "TKTL2 WILD-TYPE" 
     TCGA-91-6836 
"TKTL2 WILD-TYPE" 
     TCGA-05-4249      TCGA-05-4250      TCGA-05-4382      TCGA-05-4384 
"TKTL2 WILD-TYPE" "TKTL2 WILD-TYPE" "TKTL2 WILD-TYPE" "TKTL2 WILD-TYPE" 
     TCGA-05-4390      TCGA-05-4396      TCGA-05-4397      TCGA-05-4398 
"TKTL2 WILD-TYPE" "TKTL2 WILD-TYPE" "TKTL2 WILD-TYPE" "TKTL2 WILD-TYPE" 
     TCGA-05-4402      TCGA-05-4405      TCGA-05-4415      TCGA-05-4417 
"TKTL2 WILD-TYPE" "TKTL2 WILD-TYPE" "TKTL2 WILD-TYPE" "TKTL2 WILD-TYPE" 
     TCGA-05-4418      TCGA-05-4420      TCGA-05-4424      TCGA-05-4426 
"TKTL2 WILD-TYPE" "TKTL2 WILD-TYPE" "TKTL2 WILD-TYPE" "TKTL2 WILD-TYPE" 
     TCGA-05-4427      TCGA-05-4430      TCGA-05-4432      TCGA-05-4433 
  "TKTL2 MUTATED" "TKTL2 WILD-TYPE" "TKTL2 WILD-TYPE" "TKTL2 WILD-TYPE" 
     TCGA-05-4434      TCGA-05-5420      TCGA-05-5423      TCGA-05-5425 
"TKTL2 WILD-TYPE" "TKTL2 WILD-TYPE" "TKTL2 WILD-TYPE" "TKTL2 WILD-TYPE" 
     TCGA-05-5429      TCGA-05-5715      TCGA-35-3615      TCGA-35-4122 
"TKTL2 WILD-TYPE" "TKTL2 WILD-TYPE" "TKTL2 WILD-TYPE" "TKTL2 WILD-TYPE" 
     TCGA-35-4123      TCGA-35-5375      TCGA-38-4625      TCGA-38-4626 
"TKTL2 WILD-TYPE" "TKTL2 WILD-TYPE"   "TKTL2 MUTATED" "TKTL2 WILD-TYPE" 
     TCGA-38-4627      TCGA-38-4628      TCGA-38-4629      TCGA-38-4630 
"TKTL2 WILD-TYPE" "TKTL2 WILD-TYPE"   "TKTL2 MUTATED" "TKTL2 WILD-TYPE" 
     TCGA-38-4631      TCGA-38-4632      TCGA-38-6178      TCGA-44-2655 
"TKTL2 WILD-TYPE" "TKTL2 WILD-TYPE" "TKTL2 WILD-TYPE" "TKTL2 WILD-TYPE" 
     TCGA-44-2656      TCGA-44-2657      TCGA-44-2659      TCGA-44-2661 
  "TKTL2 MUTATED" "TKTL2 WILD-TYPE"   "TKTL2 MUTATED" "TKTL2 WILD-TYPE" 
     TCGA-44-2662      TCGA-44-2665      TCGA-44-2666      TCGA-44-2668 
"TKTL2 WILD-TYPE" "TKTL2 WILD-TYPE" "TKTL2 WILD-TYPE" "TKTL2 WILD-TYPE" 
     TCGA-44-3396      TCGA-44-3398      TCGA-44-3918      TCGA-44-3919 
"TKTL2 WILD-TYPE" "TKTL2 WILD-TYPE" "TKTL2 WILD-TYPE" "TKTL2 WILD-TYPE" 
     TCGA-44-4112      TCGA-44-5643      TCGA-44-5645      TCGA-44-6144 
  "TKTL2 MUTATED" "TKTL2 WILD-TYPE" "TKTL2 WILD-TYPE" "TKTL2 WILD-TYPE" 
     TCGA-44-6145      TCGA-44-6146      TCGA-44-6147      TCGA-44-6148 
"TKTL2 WILD-TYPE" "TKTL2 WILD-TYPE" "TKTL2 WILD-TYPE" "TKTL2 WILD-TYPE" 
     TCGA-44-6774      TCGA-44-6775      TCGA-44-6776      TCGA-44-6777 
"TKTL2 WILD-TYPE" "TKTL2 WILD-TYPE" "TKTL2 WILD-TYPE" "TKTL2 WILD-TYPE" 
     TCGA-44-6778      TCGA-44-6779      TCGA-49-4486      TCGA-49-4487 
"TKTL2 WILD-TYPE" "TKTL2 WILD-TYPE" "TKTL2 WILD-TYPE" "TKTL2 WILD-TYPE" 
     TCGA-49-4488      TCGA-49-4490      TCGA-49-4494      TCGA-49-4501 
"TKTL2 WILD-TYPE" "TKTL2 WILD-TYPE" "TKTL2 WILD-TYPE" "TKTL2 WILD-TYPE" 
     TCGA-49-4505      TCGA-49-4506      TCGA-49-4507      TCGA-49-4510 
"TKTL2 WILD-TYPE" "TKTL2 WILD-TYPE" "TKTL2 WILD-TYPE" "TKTL2 WILD-TYPE" 
     TCGA-49-4512      TCGA-49-4514      TCGA-49-6742      TCGA-49-6743 
"TKTL2 WILD-TYPE" "TKTL2 WILD-TYPE" "TKTL2 WILD-TYPE" "TKTL2 WILD-TYPE" 
     TCGA-49-6744      TCGA-49-6745      TCGA-50-5044      TCGA-50-5045 
"TKTL2 WILD-TYPE" "TKTL2 WILD-TYPE" "TKTL2 WILD-TYPE" "TKTL2 WILD-TYPE" 
     TCGA-50-5049      TCGA-50-5051      TCGA-50-5055      TCGA-50-5066 
"TKTL2 WILD-TYPE" "TKTL2 WILD-TYPE" "TKTL2 WILD-TYPE" "TKTL2 WILD-TYPE" 
     TCGA-50-5068      TCGA-50-5072      TCGA-50-5930      TCGA-50-5931 
"TKTL2 WILD-TYPE" "TKTL2 WILD-TYPE" "TKTL2 WILD-TYPE" "TKTL2 WILD-TYPE" 
     TCGA-50-5932      TCGA-50-5933      TCGA-50-5935      TCGA-50-5936 
"TKTL2 WILD-TYPE"   "TKTL2 MUTATED" "TKTL2 WILD-TYPE" "TKTL2 WILD-TYPE" 
     TCGA-50-5939      TCGA-50-5941      TCGA-50-5942      TCGA-50-5944 
"TKTL2 WILD-TYPE" "TKTL2 WILD-TYPE" "TKTL2 WILD-TYPE" "TKTL2 WILD-TYPE" 
     TCGA-50-5946      TCGA-50-6590      TCGA-50-6591      TCGA-50-6592 
"TKTL2 WILD-TYPE" "TKTL2 WILD-TYPE" "TKTL2 WILD-TYPE" "TKTL2 WILD-TYPE" 
     TCGA-50-6593      TCGA-50-6594      TCGA-50-6595      TCGA-50-6597 
"TKTL2 WILD-TYPE"   "TKTL2 MUTATED" "TKTL2 WILD-TYPE" "TKTL2 WILD-TYPE" 
     TCGA-55-1592      TCGA-55-1594      TCGA-55-1595      TCGA-55-1596 
"TKTL2 WILD-TYPE" "TKTL2 WILD-TYPE" "TKTL2 WILD-TYPE" "TKTL2 WILD-TYPE" 
     TCGA-55-5899      TCGA-55-6543      TCGA-55-6642      TCGA-55-6712 
"TKTL2 WILD-TYPE" "TKTL2 WILD-TYPE" "TKTL2 WILD-TYPE" "TKTL2 WILD-TYPE" 
     TCGA-64-1676      TCGA-64-1677      TCGA-64-1678      TCGA-64-1680 
"TKTL2 WILD-TYPE" "TKTL2 WILD-TYPE" "TKTL2 WILD-TYPE" "TKTL2 WILD-TYPE" 
     TCGA-64-5774      TCGA-64-5775      TCGA-64-5778      TCGA-64-5779 
"TKTL2 WILD-TYPE" "TKTL2 WILD-TYPE" "TKTL2 WILD-TYPE" "TKTL2 WILD-TYPE" 
     TCGA-64-5781      TCGA-64-5815      TCGA-67-3770      TCGA-67-3771 
"TKTL2 WILD-TYPE" "TKTL2 WILD-TYPE" "TKTL2 WILD-TYPE" "TKTL2 WILD-TYPE" 
     TCGA-67-3772      TCGA-67-3773      TCGA-67-3774      TCGA-67-6215 
"TKTL2 WILD-TYPE" "TKTL2 WILD-TYPE" "TKTL2 WILD-TYPE" "TKTL2 WILD-TYPE" 
     TCGA-67-6216      TCGA-67-6217      TCGA-71-6725      TCGA-73-4658 
"TKTL2 WILD-TYPE" "TKTL2 WILD-TYPE" "TKTL2 WILD-TYPE" "TKTL2 WILD-TYPE" 
     TCGA-73-4659      TCGA-73-4662      TCGA-73-4666      TCGA-73-4668 
"TKTL2 WILD-TYPE" "TKTL2 WILD-TYPE" "TKTL2 WILD-TYPE" "TKTL2 WILD-TYPE" 
     TCGA-73-4670      TCGA-73-4675      TCGA-73-4676      TCGA-73-4677 
"TKTL2 WILD-TYPE" "TKTL2 WILD-TYPE" "TKTL2 WILD-TYPE" "TKTL2 WILD-TYPE" 
     TCGA-91-6828      TCGA-91-6829      TCGA-91-6831      TCGA-91-6835 
"TKTL2 WILD-TYPE" "TKTL2 WILD-TYPE" "TKTL2 WILD-TYPE" "TKTL2 WILD-TYPE" 
     TCGA-91-6836 
"TKTL2 WILD-TYPE" 
[1] "hr=" "1.5"
D183V2, continuous
D183V3, binary
[1] "tbl2"
                 cls
clus              [,1] [,2]
  TKTL2 MUTATED      5    5
  TKTL2 WILD-TYPE   88   74
        clus
vv       TKTL2 MUTATED TKTL2 WILD-TYPE
  FEMALE             5              88
  MALE               5              74
D183V4, continuous
[1] "Remove cluster labels:" "TKTL2 MUTATED"         
clus
  TKTL2 MUTATED TKTL2 WILD-TYPE 
              1              11 
     TCGA-35-4122      TCGA-35-4123      TCGA-35-5375      TCGA-64-1677 
"TKTL2 WILD-TYPE" "TKTL2 WILD-TYPE" "TKTL2 WILD-TYPE" "TKTL2 WILD-TYPE" 
     TCGA-64-5778      TCGA-71-6725      TCGA-73-4659      TCGA-73-4662 
"TKTL2 WILD-TYPE" "TKTL2 WILD-TYPE" "TKTL2 WILD-TYPE" "TKTL2 WILD-TYPE" 
     TCGA-73-4666      TCGA-73-4668      TCGA-73-4676 
"TKTL2 WILD-TYPE" "TKTL2 WILD-TYPE" "TKTL2 WILD-TYPE" 
D183V5, multiclass
D183V6, multiclass
    clus
vv   TKTL2 MUTATED TKTL2 WILD-TYPE
  T1             2              39
  T2             5             103
  T3             2              12
  T4             1               7
D183V7, multiclass
       clus
vv      TKTL2 MUTATED TKTL2 WILD-TYPE
  N0                5              90
  N1                3              34
  N2+N3             2              33
D183V8, multiclass
    clus
vv   TKTL2 MUTATED TKTL2 WILD-TYPE
  M0            10             127
  M1             0               9
  MX             0              22
D183V9, multiclass
     clus
vv    TKTL2 MUTATED TKTL2 WILD-TYPE
  I               4              84
  II              4              29
  III             2              37
  IV              0               9
D183V10, binary
[1] "tbl2"
                 cls
clus              [,1] [,2]
  TKTL2 MUTATED      1    9
  TKTL2 WILD-TYPE   15  147
     clus
vv    TKTL2 MUTATED TKTL2 WILD-TYPE
  NO              1              15
  YES             9             147
D183V11, continuous
D183V12, continuous
D183V13, multiclass
                                             clus
vv                                            TKTL2 MUTATED TKTL2 WILD-TYPE
  CURRENT REFORMED SMOKER FOR < OR = 15 YEARS             5              57
  CURRENT REFORMED SMOKER FOR > 15 YEARS                  3              43
  CURRENT SMOKER                                          1              27
  LIFELONG NON-SMOKER                                     0              24
D183V14, continuous

Clustering(184) Variable = AKR1B10 MUTATION ANALYSIS
D184V1, survival
                   sevent
clus2                0  1
  AKR1B10 MUTATED    1  2
  AKR1B10 WILD-TYPE 98 48
  AKR1B10 MUTATED AKR1B10 WILD-TYPE 
                3               146 
  AKR1B10 MUTATED AKR1B10 WILD-TYPE 
                2                48 
$`AKR1B10 MUTATED`
TCGA-44-6777 TCGA-49-6743 TCGA-91-6829 
       32.45        12.13        41.33 

$`AKR1B10 WILD-TYPE`
TCGA-05-4249 TCGA-05-4250 TCGA-05-4382 TCGA-05-4384 TCGA-05-4390 TCGA-05-4396 
       38.07         3.98        19.92        14.01        37.02         9.96 
TCGA-05-4397 TCGA-05-4398 TCGA-05-4402 TCGA-05-4405 TCGA-05-4415 TCGA-05-4417 
       24.03        47.05         8.02        20.05         2.96        14.93 
TCGA-05-4418 TCGA-05-4420 TCGA-05-4424 TCGA-05-4426 TCGA-05-4427 TCGA-05-4430 
        8.98        29.95        30.02        26.01        26.01        25.02 
TCGA-05-4432 TCGA-05-4433 TCGA-05-4434 TCGA-05-5420 TCGA-05-5423 TCGA-05-5425 
       25.02        24.00        15.02         1.02         4.96         2.96 
TCGA-05-5429 TCGA-05-5715 TCGA-35-3615 TCGA-35-4122 TCGA-35-4123 TCGA-35-5375 
        0.99         2.04         0.46         7.36         5.95         8.68 
TCGA-38-4625 TCGA-38-4626 TCGA-38-4627 TCGA-38-4628 TCGA-38-4629 TCGA-38-4630 
       47.61        85.32        37.71        49.02        28.37        35.28 
TCGA-38-4631 TCGA-38-4632 TCGA-38-6178 TCGA-44-2655 TCGA-44-2656 TCGA-44-2657 
       11.64        44.61         5.19        18.87        19.10        13.15 
TCGA-44-2659 TCGA-44-2661 TCGA-44-2662 TCGA-44-2665 TCGA-44-2666 TCGA-44-2668 
       17.39         3.39        15.78        13.15         3.19         8.09 
TCGA-44-3396 TCGA-44-3398 TCGA-44-3918 TCGA-44-3919 TCGA-44-4112 TCGA-44-5643 
       10.22         8.32         6.44         6.21         4.60         3.48 
TCGA-44-5645 TCGA-44-6144 TCGA-44-6145 TCGA-44-6146 TCGA-44-6147 TCGA-44-6148 
        6.84         0.30         3.35         9.93         7.76         3.12 
TCGA-44-6774 TCGA-44-6775 TCGA-44-6776 TCGA-44-6778 TCGA-44-6779 TCGA-49-4486 
        5.42         2.70        63.72        36.49        16.41        76.21 
TCGA-49-4487 TCGA-49-4488 TCGA-49-4490 TCGA-49-4494 TCGA-49-4501 TCGA-49-4505 
       28.11        28.57        12.66        35.54        46.72        14.07 
TCGA-49-4506 TCGA-49-4507 TCGA-49-4510 TCGA-49-4512 TCGA-49-4514 TCGA-49-6742 
       32.84         8.81        29.46        29.75        43.20        15.02 
TCGA-49-6744 TCGA-49-6745 TCGA-50-5044 TCGA-50-5045 TCGA-50-5049 TCGA-50-5051 
       12.99         4.93        20.48        71.47        48.82        14.96 
TCGA-50-5055 TCGA-50-5066 TCGA-50-5068 TCGA-50-5072 TCGA-50-5930 TCGA-50-5931 
       25.81         9.76        49.28         8.05         9.27         8.78 
TCGA-50-5932 TCGA-50-5933 TCGA-50-5935 TCGA-50-5936 TCGA-50-5939 TCGA-50-5941 
       35.87        77.88        21.47         8.45        15.12         9.37 
TCGA-50-5942 TCGA-50-5944 TCGA-50-5946 TCGA-50-6590 TCGA-50-6591 TCGA-50-6592 
        4.44        12.26        11.47        42.31         3.88        25.51 
TCGA-50-6593 TCGA-50-6594 TCGA-50-6595 TCGA-50-6597 TCGA-55-1592 TCGA-55-1594 
       11.05        12.16         6.21        33.37        23.05        38.73 
TCGA-55-1595 TCGA-55-1596 TCGA-55-5899 TCGA-55-6543 TCGA-55-6642 TCGA-55-6712 
       48.62        45.17         2.86         0.07        32.61         0.79 
TCGA-64-1676 TCGA-64-1677 TCGA-64-1678 TCGA-64-1680 TCGA-64-5774 TCGA-64-5775 
       56.81        20.65        39.09        37.02        83.84         0.10 
TCGA-64-5778 TCGA-64-5779 TCGA-64-5781 TCGA-64-5815 TCGA-67-3770 TCGA-67-3771 
       30.44        16.67        39.52         7.33         0.99         1.97 
TCGA-67-3772 TCGA-67-3773 TCGA-67-3774 TCGA-67-6215 TCGA-67-6216 TCGA-67-6217 
        0.59         2.04         0.59         0.89         0.69        13.87 
TCGA-71-6725 TCGA-73-4658 TCGA-73-4659 TCGA-73-4662 TCGA-73-4666 TCGA-73-4668 
        2.01        52.57        23.38        29.95        20.28        15.35 
TCGA-73-4670 TCGA-73-4675 TCGA-73-4676 TCGA-73-4677 TCGA-91-6828 TCGA-91-6831 
        0.46         1.32         4.01         1.25         1.22         1.28 
TCGA-91-6835 TCGA-91-6836 
        1.15         0.36 

  AKR1B10 MUTATED AKR1B10 WILD-TYPE 
            12.13              0.07 
  AKR1B10 MUTATED AKR1B10 WILD-TYPE 
            41.33             85.32 
  AKR1B10 MUTATED AKR1B10 WILD-TYPE 
            32.45             13.51 
[1] "12.1 - 41.3 (32.5)" "0.1 - 85.3 (13.5)" 
       TCGA-05-4249        TCGA-05-4250        TCGA-05-4382        TCGA-05-4384 
"AKR1B10 WILD-TYPE" "AKR1B10 WILD-TYPE" "AKR1B10 WILD-TYPE" "AKR1B10 WILD-TYPE" 
       TCGA-05-4390        TCGA-05-4396        TCGA-05-4397        TCGA-05-4398 
"AKR1B10 WILD-TYPE" "AKR1B10 WILD-TYPE" "AKR1B10 WILD-TYPE" "AKR1B10 WILD-TYPE" 
       TCGA-05-4402        TCGA-05-4405        TCGA-05-4415        TCGA-05-4417 
"AKR1B10 WILD-TYPE" "AKR1B10 WILD-TYPE" "AKR1B10 WILD-TYPE" "AKR1B10 WILD-TYPE" 
       TCGA-05-4418        TCGA-05-4420        TCGA-05-4424        TCGA-05-4426 
"AKR1B10 WILD-TYPE" "AKR1B10 WILD-TYPE" "AKR1B10 WILD-TYPE" "AKR1B10 WILD-TYPE" 
       TCGA-05-4427        TCGA-05-4430        TCGA-05-4432        TCGA-05-4433 
"AKR1B10 WILD-TYPE" "AKR1B10 WILD-TYPE" "AKR1B10 WILD-TYPE" "AKR1B10 WILD-TYPE" 
       TCGA-05-4434        TCGA-05-5420        TCGA-05-5423        TCGA-05-5425 
"AKR1B10 WILD-TYPE" "AKR1B10 WILD-TYPE" "AKR1B10 WILD-TYPE" "AKR1B10 WILD-TYPE" 
       TCGA-05-5429        TCGA-05-5715        TCGA-35-3615        TCGA-35-4122 
"AKR1B10 WILD-TYPE" "AKR1B10 WILD-TYPE" "AKR1B10 WILD-TYPE" "AKR1B10 WILD-TYPE" 
       TCGA-35-4123        TCGA-35-5375        TCGA-38-4625        TCGA-38-4626 
"AKR1B10 WILD-TYPE" "AKR1B10 WILD-TYPE" "AKR1B10 WILD-TYPE" "AKR1B10 WILD-TYPE" 
       TCGA-38-4627        TCGA-38-4628        TCGA-38-4629        TCGA-38-4630 
"AKR1B10 WILD-TYPE" "AKR1B10 WILD-TYPE" "AKR1B10 WILD-TYPE" "AKR1B10 WILD-TYPE" 
       TCGA-38-4631        TCGA-38-4632        TCGA-38-6178        TCGA-44-2655 
"AKR1B10 WILD-TYPE" "AKR1B10 WILD-TYPE" "AKR1B10 WILD-TYPE" "AKR1B10 WILD-TYPE" 
       TCGA-44-2656        TCGA-44-2657        TCGA-44-2659        TCGA-44-2661 
"AKR1B10 WILD-TYPE" "AKR1B10 WILD-TYPE" "AKR1B10 WILD-TYPE" "AKR1B10 WILD-TYPE" 
       TCGA-44-2662        TCGA-44-2665        TCGA-44-2666        TCGA-44-2668 
"AKR1B10 WILD-TYPE" "AKR1B10 WILD-TYPE" "AKR1B10 WILD-TYPE" "AKR1B10 WILD-TYPE" 
       TCGA-44-3396        TCGA-44-3398        TCGA-44-3918        TCGA-44-3919 
"AKR1B10 WILD-TYPE" "AKR1B10 WILD-TYPE" "AKR1B10 WILD-TYPE" "AKR1B10 WILD-TYPE" 
       TCGA-44-4112        TCGA-44-5643        TCGA-44-5645        TCGA-44-6144 
"AKR1B10 WILD-TYPE" "AKR1B10 WILD-TYPE" "AKR1B10 WILD-TYPE" "AKR1B10 WILD-TYPE" 
       TCGA-44-6145        TCGA-44-6146        TCGA-44-6147        TCGA-44-6148 
"AKR1B10 WILD-TYPE" "AKR1B10 WILD-TYPE" "AKR1B10 WILD-TYPE" "AKR1B10 WILD-TYPE" 
       TCGA-44-6774        TCGA-44-6775        TCGA-44-6776        TCGA-44-6777 
"AKR1B10 WILD-TYPE" "AKR1B10 WILD-TYPE" "AKR1B10 WILD-TYPE"   "AKR1B10 MUTATED" 
       TCGA-44-6778        TCGA-44-6779        TCGA-49-4486        TCGA-49-4487 
"AKR1B10 WILD-TYPE" "AKR1B10 WILD-TYPE" "AKR1B10 WILD-TYPE" "AKR1B10 WILD-TYPE" 
       TCGA-49-4488        TCGA-49-4490        TCGA-49-4494        TCGA-49-4501 
"AKR1B10 WILD-TYPE" "AKR1B10 WILD-TYPE" "AKR1B10 WILD-TYPE" "AKR1B10 WILD-TYPE" 
       TCGA-49-4505        TCGA-49-4506        TCGA-49-4507        TCGA-49-4510 
"AKR1B10 WILD-TYPE" "AKR1B10 WILD-TYPE" "AKR1B10 WILD-TYPE" "AKR1B10 WILD-TYPE" 
       TCGA-49-4512        TCGA-49-4514        TCGA-49-6742        TCGA-49-6743 
"AKR1B10 WILD-TYPE" "AKR1B10 WILD-TYPE" "AKR1B10 WILD-TYPE"   "AKR1B10 MUTATED" 
       TCGA-49-6744        TCGA-49-6745        TCGA-50-5044        TCGA-50-5045 
"AKR1B10 WILD-TYPE" "AKR1B10 WILD-TYPE" "AKR1B10 WILD-TYPE" "AKR1B10 WILD-TYPE" 
       TCGA-50-5049        TCGA-50-5051        TCGA-50-5055        TCGA-50-5066 
"AKR1B10 WILD-TYPE" "AKR1B10 WILD-TYPE" "AKR1B10 WILD-TYPE" "AKR1B10 WILD-TYPE" 
       TCGA-50-5068        TCGA-50-5072        TCGA-50-5930        TCGA-50-5931 
"AKR1B10 WILD-TYPE" "AKR1B10 WILD-TYPE" "AKR1B10 WILD-TYPE" "AKR1B10 WILD-TYPE" 
       TCGA-50-5932        TCGA-50-5933        TCGA-50-5935        TCGA-50-5936 
"AKR1B10 WILD-TYPE" "AKR1B10 WILD-TYPE" "AKR1B10 WILD-TYPE" "AKR1B10 WILD-TYPE" 
       TCGA-50-5939        TCGA-50-5941        TCGA-50-5942        TCGA-50-5944 
"AKR1B10 WILD-TYPE" "AKR1B10 WILD-TYPE" "AKR1B10 WILD-TYPE" "AKR1B10 WILD-TYPE" 
       TCGA-50-5946        TCGA-50-6590        TCGA-50-6591        TCGA-50-6592 
"AKR1B10 WILD-TYPE" "AKR1B10 WILD-TYPE" "AKR1B10 WILD-TYPE" "AKR1B10 WILD-TYPE" 
       TCGA-50-6593        TCGA-50-6594        TCGA-50-6595        TCGA-50-6597 
"AKR1B10 WILD-TYPE" "AKR1B10 WILD-TYPE" "AKR1B10 WILD-TYPE" "AKR1B10 WILD-TYPE" 
       TCGA-55-1592        TCGA-55-1594        TCGA-55-1595        TCGA-55-1596 
"AKR1B10 WILD-TYPE" "AKR1B10 WILD-TYPE" "AKR1B10 WILD-TYPE" "AKR1B10 WILD-TYPE" 
       TCGA-55-5899        TCGA-55-6543        TCGA-55-6642        TCGA-55-6712 
"AKR1B10 WILD-TYPE" "AKR1B10 WILD-TYPE" "AKR1B10 WILD-TYPE" "AKR1B10 WILD-TYPE" 
       TCGA-64-1676        TCGA-64-1677        TCGA-64-1678        TCGA-64-1680 
"AKR1B10 WILD-TYPE" "AKR1B10 WILD-TYPE" "AKR1B10 WILD-TYPE" "AKR1B10 WILD-TYPE" 
       TCGA-64-5774        TCGA-64-5775        TCGA-64-5778        TCGA-64-5779 
"AKR1B10 WILD-TYPE" "AKR1B10 WILD-TYPE" "AKR1B10 WILD-TYPE" "AKR1B10 WILD-TYPE" 
       TCGA-64-5781        TCGA-64-5815        TCGA-67-3770        TCGA-67-3771 
"AKR1B10 WILD-TYPE" "AKR1B10 WILD-TYPE" "AKR1B10 WILD-TYPE" "AKR1B10 WILD-TYPE" 
       TCGA-67-3772        TCGA-67-3773        TCGA-67-3774        TCGA-67-6215 
"AKR1B10 WILD-TYPE" "AKR1B10 WILD-TYPE" "AKR1B10 WILD-TYPE" "AKR1B10 WILD-TYPE" 
       TCGA-67-6216        TCGA-67-6217        TCGA-71-6725        TCGA-73-4658 
"AKR1B10 WILD-TYPE" "AKR1B10 WILD-TYPE" "AKR1B10 WILD-TYPE" "AKR1B10 WILD-TYPE" 
       TCGA-73-4659        TCGA-73-4662        TCGA-73-4666        TCGA-73-4668 
"AKR1B10 WILD-TYPE" "AKR1B10 WILD-TYPE" "AKR1B10 WILD-TYPE" "AKR1B10 WILD-TYPE" 
       TCGA-73-4670        TCGA-73-4675        TCGA-73-4676        TCGA-73-4677 
"AKR1B10 WILD-TYPE" "AKR1B10 WILD-TYPE" "AKR1B10 WILD-TYPE" "AKR1B10 WILD-TYPE" 
       TCGA-91-6828        TCGA-91-6829        TCGA-91-6831        TCGA-91-6835 
"AKR1B10 WILD-TYPE"   "AKR1B10 MUTATED" "AKR1B10 WILD-TYPE" "AKR1B10 WILD-TYPE" 
       TCGA-91-6836 
"AKR1B10 WILD-TYPE" 
       TCGA-05-4249        TCGA-05-4250        TCGA-05-4382        TCGA-05-4384 
"AKR1B10 WILD-TYPE" "AKR1B10 WILD-TYPE" "AKR1B10 WILD-TYPE" "AKR1B10 WILD-TYPE" 
       TCGA-05-4390        TCGA-05-4396        TCGA-05-4397        TCGA-05-4398 
"AKR1B10 WILD-TYPE" "AKR1B10 WILD-TYPE" "AKR1B10 WILD-TYPE" "AKR1B10 WILD-TYPE" 
       TCGA-05-4402        TCGA-05-4405        TCGA-05-4415        TCGA-05-4417 
"AKR1B10 WILD-TYPE" "AKR1B10 WILD-TYPE" "AKR1B10 WILD-TYPE" "AKR1B10 WILD-TYPE" 
       TCGA-05-4418        TCGA-05-4420        TCGA-05-4424        TCGA-05-4426 
"AKR1B10 WILD-TYPE" "AKR1B10 WILD-TYPE" "AKR1B10 WILD-TYPE" "AKR1B10 WILD-TYPE" 
       TCGA-05-4427        TCGA-05-4430        TCGA-05-4432        TCGA-05-4433 
"AKR1B10 WILD-TYPE" "AKR1B10 WILD-TYPE" "AKR1B10 WILD-TYPE" "AKR1B10 WILD-TYPE" 
       TCGA-05-4434        TCGA-05-5420        TCGA-05-5423        TCGA-05-5425 
"AKR1B10 WILD-TYPE" "AKR1B10 WILD-TYPE" "AKR1B10 WILD-TYPE" "AKR1B10 WILD-TYPE" 
       TCGA-05-5429        TCGA-05-5715        TCGA-35-3615        TCGA-35-4122 
"AKR1B10 WILD-TYPE" "AKR1B10 WILD-TYPE" "AKR1B10 WILD-TYPE" "AKR1B10 WILD-TYPE" 
       TCGA-35-4123        TCGA-35-5375        TCGA-38-4625        TCGA-38-4626 
"AKR1B10 WILD-TYPE" "AKR1B10 WILD-TYPE" "AKR1B10 WILD-TYPE" "AKR1B10 WILD-TYPE" 
       TCGA-38-4627        TCGA-38-4628        TCGA-38-4629        TCGA-38-4630 
"AKR1B10 WILD-TYPE" "AKR1B10 WILD-TYPE" "AKR1B10 WILD-TYPE" "AKR1B10 WILD-TYPE" 
       TCGA-38-4631        TCGA-38-4632        TCGA-38-6178        TCGA-44-2655 
"AKR1B10 WILD-TYPE" "AKR1B10 WILD-TYPE" "AKR1B10 WILD-TYPE" "AKR1B10 WILD-TYPE" 
       TCGA-44-2656        TCGA-44-2657        TCGA-44-2659        TCGA-44-2661 
"AKR1B10 WILD-TYPE" "AKR1B10 WILD-TYPE" "AKR1B10 WILD-TYPE" "AKR1B10 WILD-TYPE" 
       TCGA-44-2662        TCGA-44-2665        TCGA-44-2666        TCGA-44-2668 
"AKR1B10 WILD-TYPE" "AKR1B10 WILD-TYPE" "AKR1B10 WILD-TYPE" "AKR1B10 WILD-TYPE" 
       TCGA-44-3396        TCGA-44-3398        TCGA-44-3918        TCGA-44-3919 
"AKR1B10 WILD-TYPE" "AKR1B10 WILD-TYPE" "AKR1B10 WILD-TYPE" "AKR1B10 WILD-TYPE" 
       TCGA-44-4112        TCGA-44-5643        TCGA-44-5645        TCGA-44-6144 
"AKR1B10 WILD-TYPE" "AKR1B10 WILD-TYPE" "AKR1B10 WILD-TYPE" "AKR1B10 WILD-TYPE" 
       TCGA-44-6145        TCGA-44-6146        TCGA-44-6147        TCGA-44-6148 
"AKR1B10 WILD-TYPE" "AKR1B10 WILD-TYPE" "AKR1B10 WILD-TYPE" "AKR1B10 WILD-TYPE" 
       TCGA-44-6774        TCGA-44-6775        TCGA-44-6776        TCGA-44-6777 
"AKR1B10 WILD-TYPE" "AKR1B10 WILD-TYPE" "AKR1B10 WILD-TYPE"   "AKR1B10 MUTATED" 
       TCGA-44-6778        TCGA-44-6779        TCGA-49-4486        TCGA-49-4487 
"AKR1B10 WILD-TYPE" "AKR1B10 WILD-TYPE" "AKR1B10 WILD-TYPE" "AKR1B10 WILD-TYPE" 
       TCGA-49-4488        TCGA-49-4490        TCGA-49-4494        TCGA-49-4501 
"AKR1B10 WILD-TYPE" "AKR1B10 WILD-TYPE" "AKR1B10 WILD-TYPE" "AKR1B10 WILD-TYPE" 
       TCGA-49-4505        TCGA-49-4506        TCGA-49-4507        TCGA-49-4510 
"AKR1B10 WILD-TYPE" "AKR1B10 WILD-TYPE" "AKR1B10 WILD-TYPE" "AKR1B10 WILD-TYPE" 
       TCGA-49-4512        TCGA-49-4514        TCGA-49-6742        TCGA-49-6743 
"AKR1B10 WILD-TYPE" "AKR1B10 WILD-TYPE" "AKR1B10 WILD-TYPE"   "AKR1B10 MUTATED" 
       TCGA-49-6744        TCGA-49-6745        TCGA-50-5044        TCGA-50-5045 
"AKR1B10 WILD-TYPE" "AKR1B10 WILD-TYPE" "AKR1B10 WILD-TYPE" "AKR1B10 WILD-TYPE" 
       TCGA-50-5049        TCGA-50-5051        TCGA-50-5055        TCGA-50-5066 
"AKR1B10 WILD-TYPE" "AKR1B10 WILD-TYPE" "AKR1B10 WILD-TYPE" "AKR1B10 WILD-TYPE" 
       TCGA-50-5068        TCGA-50-5072        TCGA-50-5930        TCGA-50-5931 
"AKR1B10 WILD-TYPE" "AKR1B10 WILD-TYPE" "AKR1B10 WILD-TYPE" "AKR1B10 WILD-TYPE" 
       TCGA-50-5932        TCGA-50-5933        TCGA-50-5935        TCGA-50-5936 
"AKR1B10 WILD-TYPE" "AKR1B10 WILD-TYPE" "AKR1B10 WILD-TYPE" "AKR1B10 WILD-TYPE" 
       TCGA-50-5939        TCGA-50-5941        TCGA-50-5942        TCGA-50-5944 
"AKR1B10 WILD-TYPE" "AKR1B10 WILD-TYPE" "AKR1B10 WILD-TYPE" "AKR1B10 WILD-TYPE" 
       TCGA-50-5946        TCGA-50-6590        TCGA-50-6591        TCGA-50-6592 
"AKR1B10 WILD-TYPE" "AKR1B10 WILD-TYPE" "AKR1B10 WILD-TYPE" "AKR1B10 WILD-TYPE" 
       TCGA-50-6593        TCGA-50-6594        TCGA-50-6595        TCGA-50-6597 
"AKR1B10 WILD-TYPE" "AKR1B10 WILD-TYPE" "AKR1B10 WILD-TYPE" "AKR1B10 WILD-TYPE" 
       TCGA-55-1592        TCGA-55-1594        TCGA-55-1595        TCGA-55-1596 
"AKR1B10 WILD-TYPE" "AKR1B10 WILD-TYPE" "AKR1B10 WILD-TYPE" "AKR1B10 WILD-TYPE" 
       TCGA-55-5899        TCGA-55-6543        TCGA-55-6642        TCGA-55-6712 
"AKR1B10 WILD-TYPE" "AKR1B10 WILD-TYPE" "AKR1B10 WILD-TYPE" "AKR1B10 WILD-TYPE" 
       TCGA-64-1676        TCGA-64-1677        TCGA-64-1678        TCGA-64-1680 
"AKR1B10 WILD-TYPE" "AKR1B10 WILD-TYPE" "AKR1B10 WILD-TYPE" "AKR1B10 WILD-TYPE" 
       TCGA-64-5774        TCGA-64-5775        TCGA-64-5778        TCGA-64-5779 
"AKR1B10 WILD-TYPE" "AKR1B10 WILD-TYPE" "AKR1B10 WILD-TYPE" "AKR1B10 WILD-TYPE" 
       TCGA-64-5781        TCGA-64-5815        TCGA-67-3770        TCGA-67-3771 
"AKR1B10 WILD-TYPE" "AKR1B10 WILD-TYPE" "AKR1B10 WILD-TYPE" "AKR1B10 WILD-TYPE" 
       TCGA-67-3772        TCGA-67-3773        TCGA-67-3774        TCGA-67-6215 
"AKR1B10 WILD-TYPE" "AKR1B10 WILD-TYPE" "AKR1B10 WILD-TYPE" "AKR1B10 WILD-TYPE" 
       TCGA-67-6216        TCGA-67-6217        TCGA-71-6725        TCGA-73-4658 
"AKR1B10 WILD-TYPE" "AKR1B10 WILD-TYPE" "AKR1B10 WILD-TYPE" "AKR1B10 WILD-TYPE" 
       TCGA-73-4659        TCGA-73-4662        TCGA-73-4666        TCGA-73-4668 
"AKR1B10 WILD-TYPE" "AKR1B10 WILD-TYPE" "AKR1B10 WILD-TYPE" "AKR1B10 WILD-TYPE" 
       TCGA-73-4670        TCGA-73-4675        TCGA-73-4676        TCGA-73-4677 
"AKR1B10 WILD-TYPE" "AKR1B10 WILD-TYPE" "AKR1B10 WILD-TYPE" "AKR1B10 WILD-TYPE" 
       TCGA-91-6828        TCGA-91-6829        TCGA-91-6831        TCGA-91-6835 
"AKR1B10 WILD-TYPE"   "AKR1B10 MUTATED" "AKR1B10 WILD-TYPE" "AKR1B10 WILD-TYPE" 
       TCGA-91-6836 
"AKR1B10 WILD-TYPE" 
       TCGA-05-4249        TCGA-05-4250        TCGA-05-4382        TCGA-05-4384 
"AKR1B10 WILD-TYPE" "AKR1B10 WILD-TYPE" "AKR1B10 WILD-TYPE" "AKR1B10 WILD-TYPE" 
       TCGA-05-4390        TCGA-05-4396        TCGA-05-4397        TCGA-05-4398 
"AKR1B10 WILD-TYPE" "AKR1B10 WILD-TYPE" "AKR1B10 WILD-TYPE" "AKR1B10 WILD-TYPE" 
       TCGA-05-4402        TCGA-05-4405        TCGA-05-4415        TCGA-05-4417 
"AKR1B10 WILD-TYPE" "AKR1B10 WILD-TYPE" "AKR1B10 WILD-TYPE" "AKR1B10 WILD-TYPE" 
       TCGA-05-4418        TCGA-05-4420        TCGA-05-4424        TCGA-05-4426 
"AKR1B10 WILD-TYPE" "AKR1B10 WILD-TYPE" "AKR1B10 WILD-TYPE" "AKR1B10 WILD-TYPE" 
       TCGA-05-4427        TCGA-05-4430        TCGA-05-4432        TCGA-05-4433 
"AKR1B10 WILD-TYPE" "AKR1B10 WILD-TYPE" "AKR1B10 WILD-TYPE" "AKR1B10 WILD-TYPE" 
       TCGA-05-4434        TCGA-05-5420        TCGA-05-5423        TCGA-05-5425 
"AKR1B10 WILD-TYPE" "AKR1B10 WILD-TYPE" "AKR1B10 WILD-TYPE" "AKR1B10 WILD-TYPE" 
       TCGA-05-5429        TCGA-05-5715        TCGA-35-3615        TCGA-35-4122 
"AKR1B10 WILD-TYPE" "AKR1B10 WILD-TYPE" "AKR1B10 WILD-TYPE" "AKR1B10 WILD-TYPE" 
       TCGA-35-4123        TCGA-35-5375        TCGA-38-4625        TCGA-38-4626 
"AKR1B10 WILD-TYPE" "AKR1B10 WILD-TYPE" "AKR1B10 WILD-TYPE" "AKR1B10 WILD-TYPE" 
       TCGA-38-4627        TCGA-38-4628        TCGA-38-4629        TCGA-38-4630 
"AKR1B10 WILD-TYPE" "AKR1B10 WILD-TYPE" "AKR1B10 WILD-TYPE" "AKR1B10 WILD-TYPE" 
       TCGA-38-4631        TCGA-38-4632        TCGA-38-6178        TCGA-44-2655 
"AKR1B10 WILD-TYPE" "AKR1B10 WILD-TYPE" "AKR1B10 WILD-TYPE" "AKR1B10 WILD-TYPE" 
       TCGA-44-2656        TCGA-44-2657        TCGA-44-2659        TCGA-44-2661 
"AKR1B10 WILD-TYPE" "AKR1B10 WILD-TYPE" "AKR1B10 WILD-TYPE" "AKR1B10 WILD-TYPE" 
       TCGA-44-2662        TCGA-44-2665        TCGA-44-2666        TCGA-44-2668 
"AKR1B10 WILD-TYPE" "AKR1B10 WILD-TYPE" "AKR1B10 WILD-TYPE" "AKR1B10 WILD-TYPE" 
       TCGA-44-3396        TCGA-44-3398        TCGA-44-3918        TCGA-44-3919 
"AKR1B10 WILD-TYPE" "AKR1B10 WILD-TYPE" "AKR1B10 WILD-TYPE" "AKR1B10 WILD-TYPE" 
       TCGA-44-4112        TCGA-44-5643        TCGA-44-5645        TCGA-44-6144 
"AKR1B10 WILD-TYPE" "AKR1B10 WILD-TYPE" "AKR1B10 WILD-TYPE" "AKR1B10 WILD-TYPE" 
       TCGA-44-6145        TCGA-44-6146        TCGA-44-6147        TCGA-44-6148 
"AKR1B10 WILD-TYPE" "AKR1B10 WILD-TYPE" "AKR1B10 WILD-TYPE" "AKR1B10 WILD-TYPE" 
       TCGA-44-6774        TCGA-44-6775        TCGA-44-6776        TCGA-44-6777 
"AKR1B10 WILD-TYPE" "AKR1B10 WILD-TYPE" "AKR1B10 WILD-TYPE"   "AKR1B10 MUTATED" 
       TCGA-44-6778        TCGA-44-6779        TCGA-49-4486        TCGA-49-4487 
"AKR1B10 WILD-TYPE" "AKR1B10 WILD-TYPE" "AKR1B10 WILD-TYPE" "AKR1B10 WILD-TYPE" 
       TCGA-49-4488        TCGA-49-4490        TCGA-49-4494        TCGA-49-4501 
"AKR1B10 WILD-TYPE" "AKR1B10 WILD-TYPE" "AKR1B10 WILD-TYPE" "AKR1B10 WILD-TYPE" 
       TCGA-49-4505        TCGA-49-4506        TCGA-49-4507        TCGA-49-4510 
"AKR1B10 WILD-TYPE" "AKR1B10 WILD-TYPE" "AKR1B10 WILD-TYPE" "AKR1B10 WILD-TYPE" 
       TCGA-49-4512        TCGA-49-4514        TCGA-49-6742        TCGA-49-6743 
"AKR1B10 WILD-TYPE" "AKR1B10 WILD-TYPE" "AKR1B10 WILD-TYPE"   "AKR1B10 MUTATED" 
       TCGA-49-6744        TCGA-49-6745        TCGA-50-5044        TCGA-50-5045 
"AKR1B10 WILD-TYPE" "AKR1B10 WILD-TYPE" "AKR1B10 WILD-TYPE" "AKR1B10 WILD-TYPE" 
       TCGA-50-5049        TCGA-50-5051        TCGA-50-5055        TCGA-50-5066 
"AKR1B10 WILD-TYPE" "AKR1B10 WILD-TYPE" "AKR1B10 WILD-TYPE" "AKR1B10 WILD-TYPE" 
       TCGA-50-5068        TCGA-50-5072        TCGA-50-5930        TCGA-50-5931 
"AKR1B10 WILD-TYPE" "AKR1B10 WILD-TYPE" "AKR1B10 WILD-TYPE" "AKR1B10 WILD-TYPE" 
       TCGA-50-5932        TCGA-50-5933        TCGA-50-5935        TCGA-50-5936 
"AKR1B10 WILD-TYPE" "AKR1B10 WILD-TYPE" "AKR1B10 WILD-TYPE" "AKR1B10 WILD-TYPE" 
       TCGA-50-5939        TCGA-50-5941        TCGA-50-5942        TCGA-50-5944 
"AKR1B10 WILD-TYPE" "AKR1B10 WILD-TYPE" "AKR1B10 WILD-TYPE" "AKR1B10 WILD-TYPE" 
       TCGA-50-5946        TCGA-50-6590        TCGA-50-6591        TCGA-50-6592 
"AKR1B10 WILD-TYPE" "AKR1B10 WILD-TYPE" "AKR1B10 WILD-TYPE" "AKR1B10 WILD-TYPE" 
       TCGA-50-6593        TCGA-50-6594        TCGA-50-6595        TCGA-50-6597 
"AKR1B10 WILD-TYPE" "AKR1B10 WILD-TYPE" "AKR1B10 WILD-TYPE" "AKR1B10 WILD-TYPE" 
       TCGA-55-1592        TCGA-55-1594        TCGA-55-1595        TCGA-55-1596 
"AKR1B10 WILD-TYPE" "AKR1B10 WILD-TYPE" "AKR1B10 WILD-TYPE" "AKR1B10 WILD-TYPE" 
       TCGA-55-5899        TCGA-55-6543        TCGA-55-6642        TCGA-55-6712 
"AKR1B10 WILD-TYPE" "AKR1B10 WILD-TYPE" "AKR1B10 WILD-TYPE" "AKR1B10 WILD-TYPE" 
       TCGA-64-1676        TCGA-64-1677        TCGA-64-1678        TCGA-64-1680 
"AKR1B10 WILD-TYPE" "AKR1B10 WILD-TYPE" "AKR1B10 WILD-TYPE" "AKR1B10 WILD-TYPE" 
       TCGA-64-5774        TCGA-64-5775        TCGA-64-5778        TCGA-64-5779 
"AKR1B10 WILD-TYPE" "AKR1B10 WILD-TYPE" "AKR1B10 WILD-TYPE" "AKR1B10 WILD-TYPE" 
       TCGA-64-5781        TCGA-64-5815        TCGA-67-3770        TCGA-67-3771 
"AKR1B10 WILD-TYPE" "AKR1B10 WILD-TYPE" "AKR1B10 WILD-TYPE" "AKR1B10 WILD-TYPE" 
       TCGA-67-3772        TCGA-67-3773        TCGA-67-3774        TCGA-67-6215 
"AKR1B10 WILD-TYPE" "AKR1B10 WILD-TYPE" "AKR1B10 WILD-TYPE" "AKR1B10 WILD-TYPE" 
       TCGA-67-6216        TCGA-67-6217        TCGA-71-6725        TCGA-73-4658 
"AKR1B10 WILD-TYPE" "AKR1B10 WILD-TYPE" "AKR1B10 WILD-TYPE" "AKR1B10 WILD-TYPE" 
       TCGA-73-4659        TCGA-73-4662        TCGA-73-4666        TCGA-73-4668 
"AKR1B10 WILD-TYPE" "AKR1B10 WILD-TYPE" "AKR1B10 WILD-TYPE" "AKR1B10 WILD-TYPE" 
       TCGA-73-4670        TCGA-73-4675        TCGA-73-4676        TCGA-73-4677 
"AKR1B10 WILD-TYPE" "AKR1B10 WILD-TYPE" "AKR1B10 WILD-TYPE" "AKR1B10 WILD-TYPE" 
       TCGA-91-6828        TCGA-91-6829        TCGA-91-6831        TCGA-91-6835 
"AKR1B10 WILD-TYPE"   "AKR1B10 MUTATED" "AKR1B10 WILD-TYPE" "AKR1B10 WILD-TYPE" 
       TCGA-91-6836 
"AKR1B10 WILD-TYPE" 
[1] "hr=" "1.4"
D184V2, continuous
D184V3, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  AKR1B10 MUTATED      2    2
  AKR1B10 WILD-TYPE   91   77
        clus
vv       AKR1B10 MUTATED AKR1B10 WILD-TYPE
  FEMALE               2                91
  MALE                 2                77
D184V4, continuous
[1] "Remove cluster labels:" "AKR1B10 MUTATED"       
clus
  AKR1B10 MUTATED AKR1B10 WILD-TYPE 
                1                11 
       TCGA-35-4122        TCGA-35-4123        TCGA-35-5375        TCGA-64-1677 
"AKR1B10 WILD-TYPE" "AKR1B10 WILD-TYPE" "AKR1B10 WILD-TYPE" "AKR1B10 WILD-TYPE" 
       TCGA-64-5778        TCGA-71-6725        TCGA-73-4659        TCGA-73-4662 
"AKR1B10 WILD-TYPE" "AKR1B10 WILD-TYPE" "AKR1B10 WILD-TYPE" "AKR1B10 WILD-TYPE" 
       TCGA-73-4666        TCGA-73-4668        TCGA-73-4676 
"AKR1B10 WILD-TYPE" "AKR1B10 WILD-TYPE" "AKR1B10 WILD-TYPE" 
D184V5, multiclass
D184V6, multiclass
    clus
vv   AKR1B10 MUTATED AKR1B10 WILD-TYPE
  T1               1                40
  T2               3               105
  T3               0                14
  T4               0                 8
D184V7, multiclass
       clus
vv      AKR1B10 MUTATED AKR1B10 WILD-TYPE
  N0                  2                93
  N1                  0                37
  N2+N3               1                34
D184V8, multiclass
    clus
vv   AKR1B10 MUTATED AKR1B10 WILD-TYPE
  M0               1               136
  M1               0                 9
  MX               3                19
D184V9, multiclass
     clus
vv    AKR1B10 MUTATED AKR1B10 WILD-TYPE
  I                 3                85
  II                0                33
  III               1                38
  IV                0                 9
D184V10, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  AKR1B10 MUTATED      1    3
  AKR1B10 WILD-TYPE   15  153
     clus
vv    AKR1B10 MUTATED AKR1B10 WILD-TYPE
  NO                1                15
  YES               3               153
D184V11, continuous
D184V12, continuous
D184V13, multiclass
                                             clus
vv                                            AKR1B10 MUTATED AKR1B10 WILD-TYPE
  CURRENT REFORMED SMOKER FOR < OR = 15 YEARS               3                59
  CURRENT REFORMED SMOKER FOR > 15 YEARS                    1                45
  CURRENT SMOKER                                            0                28
  LIFELONG NON-SMOKER                                       0                24
D184V14, continuous
[1] "Remove cluster labels:" "AKR1B10 MUTATED"       
clus
  AKR1B10 MUTATED AKR1B10 WILD-TYPE 
                2                66 
       TCGA-05-4384        TCGA-05-4390        TCGA-05-4396        TCGA-05-4405 
"AKR1B10 WILD-TYPE" "AKR1B10 WILD-TYPE" "AKR1B10 WILD-TYPE" "AKR1B10 WILD-TYPE" 
       TCGA-05-4410        TCGA-05-4415        TCGA-05-4417        TCGA-05-4424 
"AKR1B10 WILD-TYPE" "AKR1B10 WILD-TYPE" "AKR1B10 WILD-TYPE" "AKR1B10 WILD-TYPE" 
       TCGA-05-4427        TCGA-05-4433        TCGA-05-5420        TCGA-05-5423 
"AKR1B10 WILD-TYPE" "AKR1B10 WILD-TYPE" "AKR1B10 WILD-TYPE" "AKR1B10 WILD-TYPE" 
       TCGA-05-5425        TCGA-05-5428        TCGA-35-4122        TCGA-35-4123 
"AKR1B10 WILD-TYPE" "AKR1B10 WILD-TYPE" "AKR1B10 WILD-TYPE" "AKR1B10 WILD-TYPE" 
       TCGA-35-5375        TCGA-38-4625        TCGA-38-4626        TCGA-44-2655 
"AKR1B10 WILD-TYPE" "AKR1B10 WILD-TYPE" "AKR1B10 WILD-TYPE" "AKR1B10 WILD-TYPE" 
       TCGA-44-2656        TCGA-44-2657        TCGA-44-2659        TCGA-44-2662 
"AKR1B10 WILD-TYPE" "AKR1B10 WILD-TYPE" "AKR1B10 WILD-TYPE" "AKR1B10 WILD-TYPE" 
       TCGA-44-2666        TCGA-44-2668        TCGA-44-3396        TCGA-44-3398 
"AKR1B10 WILD-TYPE" "AKR1B10 WILD-TYPE" "AKR1B10 WILD-TYPE" "AKR1B10 WILD-TYPE" 
       TCGA-44-3918        TCGA-44-4112        TCGA-44-5645        TCGA-44-6144 
"AKR1B10 WILD-TYPE" "AKR1B10 WILD-TYPE" "AKR1B10 WILD-TYPE" "AKR1B10 WILD-TYPE" 
       TCGA-44-6145        TCGA-44-6147        TCGA-44-6148        TCGA-44-6774 
"AKR1B10 WILD-TYPE" "AKR1B10 WILD-TYPE" "AKR1B10 WILD-TYPE" "AKR1B10 WILD-TYPE" 
       TCGA-44-6775        TCGA-44-6776        TCGA-44-6778        TCGA-44-6779 
"AKR1B10 WILD-TYPE" "AKR1B10 WILD-TYPE" "AKR1B10 WILD-TYPE" "AKR1B10 WILD-TYPE" 
       TCGA-49-4486        TCGA-49-4494        TCGA-49-4505        TCGA-55-1592 
"AKR1B10 WILD-TYPE" "AKR1B10 WILD-TYPE" "AKR1B10 WILD-TYPE" "AKR1B10 WILD-TYPE" 
       TCGA-55-1594        TCGA-55-1595        TCGA-55-1596        TCGA-55-5899 
"AKR1B10 WILD-TYPE" "AKR1B10 WILD-TYPE" "AKR1B10 WILD-TYPE" "AKR1B10 WILD-TYPE" 
       TCGA-55-6642        TCGA-55-6712        TCGA-64-1677        TCGA-64-1678 
"AKR1B10 WILD-TYPE" "AKR1B10 WILD-TYPE" "AKR1B10 WILD-TYPE" "AKR1B10 WILD-TYPE" 
       TCGA-64-1680        TCGA-64-5774        TCGA-64-5775        TCGA-64-5778 
"AKR1B10 WILD-TYPE" "AKR1B10 WILD-TYPE" "AKR1B10 WILD-TYPE" "AKR1B10 WILD-TYPE" 
       TCGA-64-5779        TCGA-64-5781        TCGA-73-4659        TCGA-73-4662 
"AKR1B10 WILD-TYPE" "AKR1B10 WILD-TYPE" "AKR1B10 WILD-TYPE" "AKR1B10 WILD-TYPE" 
       TCGA-73-4666        TCGA-73-4668        TCGA-73-4670        TCGA-73-4675 
"AKR1B10 WILD-TYPE" "AKR1B10 WILD-TYPE" "AKR1B10 WILD-TYPE" "AKR1B10 WILD-TYPE" 
       TCGA-73-4676        TCGA-91-6836 
"AKR1B10 WILD-TYPE" "AKR1B10 WILD-TYPE" 

Clustering(185) Variable = TCEAL5 MUTATION ANALYSIS
D185V1, survival
                  sevent
clus2               0  1
  TCEAL5 MUTATED    3  0
  TCEAL5 WILD-TYPE 96 50
  TCEAL5 MUTATED TCEAL5 WILD-TYPE 
               3              146 
  TCEAL5 MUTATED TCEAL5 WILD-TYPE 
               0               50 
$`TCEAL5 MUTATED`
TCGA-44-6144 TCGA-44-6776 TCGA-73-4662 
        0.30        63.72        29.95 

$`TCEAL5 WILD-TYPE`
TCGA-05-4249 TCGA-05-4250 TCGA-05-4382 TCGA-05-4384 TCGA-05-4390 TCGA-05-4396 
       38.07         3.98        19.92        14.01        37.02         9.96 
TCGA-05-4397 TCGA-05-4398 TCGA-05-4402 TCGA-05-4405 TCGA-05-4415 TCGA-05-4417 
       24.03        47.05         8.02        20.05         2.96        14.93 
TCGA-05-4418 TCGA-05-4420 TCGA-05-4424 TCGA-05-4426 TCGA-05-4427 TCGA-05-4430 
        8.98        29.95        30.02        26.01        26.01        25.02 
TCGA-05-4432 TCGA-05-4433 TCGA-05-4434 TCGA-05-5420 TCGA-05-5423 TCGA-05-5425 
       25.02        24.00        15.02         1.02         4.96         2.96 
TCGA-05-5429 TCGA-05-5715 TCGA-35-3615 TCGA-35-4122 TCGA-35-4123 TCGA-35-5375 
        0.99         2.04         0.46         7.36         5.95         8.68 
TCGA-38-4625 TCGA-38-4626 TCGA-38-4627 TCGA-38-4628 TCGA-38-4629 TCGA-38-4630 
       47.61        85.32        37.71        49.02        28.37        35.28 
TCGA-38-4631 TCGA-38-4632 TCGA-38-6178 TCGA-44-2655 TCGA-44-2656 TCGA-44-2657 
       11.64        44.61         5.19        18.87        19.10        13.15 
TCGA-44-2659 TCGA-44-2661 TCGA-44-2662 TCGA-44-2665 TCGA-44-2666 TCGA-44-2668 
       17.39         3.39        15.78        13.15         3.19         8.09 
TCGA-44-3396 TCGA-44-3398 TCGA-44-3918 TCGA-44-3919 TCGA-44-4112 TCGA-44-5643 
       10.22         8.32         6.44         6.21         4.60         3.48 
TCGA-44-5645 TCGA-44-6145 TCGA-44-6146 TCGA-44-6147 TCGA-44-6148 TCGA-44-6774 
        6.84         3.35         9.93         7.76         3.12         5.42 
TCGA-44-6775 TCGA-44-6777 TCGA-44-6778 TCGA-44-6779 TCGA-49-4486 TCGA-49-4487 
        2.70        32.45        36.49        16.41        76.21        28.11 
TCGA-49-4488 TCGA-49-4490 TCGA-49-4494 TCGA-49-4501 TCGA-49-4505 TCGA-49-4506 
       28.57        12.66        35.54        46.72        14.07        32.84 
TCGA-49-4507 TCGA-49-4510 TCGA-49-4512 TCGA-49-4514 TCGA-49-6742 TCGA-49-6743 
        8.81        29.46        29.75        43.20        15.02        12.13 
TCGA-49-6744 TCGA-49-6745 TCGA-50-5044 TCGA-50-5045 TCGA-50-5049 TCGA-50-5051 
       12.99         4.93        20.48        71.47        48.82        14.96 
TCGA-50-5055 TCGA-50-5066 TCGA-50-5068 TCGA-50-5072 TCGA-50-5930 TCGA-50-5931 
       25.81         9.76        49.28         8.05         9.27         8.78 
TCGA-50-5932 TCGA-50-5933 TCGA-50-5935 TCGA-50-5936 TCGA-50-5939 TCGA-50-5941 
       35.87        77.88        21.47         8.45        15.12         9.37 
TCGA-50-5942 TCGA-50-5944 TCGA-50-5946 TCGA-50-6590 TCGA-50-6591 TCGA-50-6592 
        4.44        12.26        11.47        42.31         3.88        25.51 
TCGA-50-6593 TCGA-50-6594 TCGA-50-6595 TCGA-50-6597 TCGA-55-1592 TCGA-55-1594 
       11.05        12.16         6.21        33.37        23.05        38.73 
TCGA-55-1595 TCGA-55-1596 TCGA-55-5899 TCGA-55-6543 TCGA-55-6642 TCGA-55-6712 
       48.62        45.17         2.86         0.07        32.61         0.79 
TCGA-64-1676 TCGA-64-1677 TCGA-64-1678 TCGA-64-1680 TCGA-64-5774 TCGA-64-5775 
       56.81        20.65        39.09        37.02        83.84         0.10 
TCGA-64-5778 TCGA-64-5779 TCGA-64-5781 TCGA-64-5815 TCGA-67-3770 TCGA-67-3771 
       30.44        16.67        39.52         7.33         0.99         1.97 
TCGA-67-3772 TCGA-67-3773 TCGA-67-3774 TCGA-67-6215 TCGA-67-6216 TCGA-67-6217 
        0.59         2.04         0.59         0.89         0.69        13.87 
TCGA-71-6725 TCGA-73-4658 TCGA-73-4659 TCGA-73-4666 TCGA-73-4668 TCGA-73-4670 
        2.01        52.57        23.38        20.28        15.35         0.46 
TCGA-73-4675 TCGA-73-4676 TCGA-73-4677 TCGA-91-6828 TCGA-91-6829 TCGA-91-6831 
        1.32         4.01         1.25         1.22        41.33         1.28 
TCGA-91-6835 TCGA-91-6836 
        1.15         0.36 

  TCEAL5 MUTATED TCEAL5 WILD-TYPE 
            0.30             0.07 
  TCEAL5 MUTATED TCEAL5 WILD-TYPE 
           63.72            85.32 
  TCEAL5 MUTATED TCEAL5 WILD-TYPE 
           29.95            13.51 
[1] "0.3 - 63.7 (29.9)" "0.1 - 85.3 (13.5)"
      TCGA-05-4249       TCGA-05-4250       TCGA-05-4382       TCGA-05-4384 
"TCEAL5 WILD-TYPE" "TCEAL5 WILD-TYPE" "TCEAL5 WILD-TYPE" "TCEAL5 WILD-TYPE" 
      TCGA-05-4390       TCGA-05-4396       TCGA-05-4397       TCGA-05-4398 
"TCEAL5 WILD-TYPE" "TCEAL5 WILD-TYPE" "TCEAL5 WILD-TYPE" "TCEAL5 WILD-TYPE" 
      TCGA-05-4402       TCGA-05-4405       TCGA-05-4415       TCGA-05-4417 
"TCEAL5 WILD-TYPE" "TCEAL5 WILD-TYPE" "TCEAL5 WILD-TYPE" "TCEAL5 WILD-TYPE" 
      TCGA-05-4418       TCGA-05-4420       TCGA-05-4424       TCGA-05-4426 
"TCEAL5 WILD-TYPE" "TCEAL5 WILD-TYPE" "TCEAL5 WILD-TYPE" "TCEAL5 WILD-TYPE" 
      TCGA-05-4427       TCGA-05-4430       TCGA-05-4432       TCGA-05-4433 
"TCEAL5 WILD-TYPE" "TCEAL5 WILD-TYPE" "TCEAL5 WILD-TYPE" "TCEAL5 WILD-TYPE" 
      TCGA-05-4434       TCGA-05-5420       TCGA-05-5423       TCGA-05-5425 
"TCEAL5 WILD-TYPE" "TCEAL5 WILD-TYPE" "TCEAL5 WILD-TYPE" "TCEAL5 WILD-TYPE" 
      TCGA-05-5429       TCGA-05-5715       TCGA-35-3615       TCGA-35-4122 
"TCEAL5 WILD-TYPE" "TCEAL5 WILD-TYPE" "TCEAL5 WILD-TYPE" "TCEAL5 WILD-TYPE" 
      TCGA-35-4123       TCGA-35-5375       TCGA-38-4625       TCGA-38-4626 
"TCEAL5 WILD-TYPE" "TCEAL5 WILD-TYPE" "TCEAL5 WILD-TYPE" "TCEAL5 WILD-TYPE" 
      TCGA-38-4627       TCGA-38-4628       TCGA-38-4629       TCGA-38-4630 
"TCEAL5 WILD-TYPE" "TCEAL5 WILD-TYPE" "TCEAL5 WILD-TYPE" "TCEAL5 WILD-TYPE" 
      TCGA-38-4631       TCGA-38-4632       TCGA-38-6178       TCGA-44-2655 
"TCEAL5 WILD-TYPE" "TCEAL5 WILD-TYPE" "TCEAL5 WILD-TYPE" "TCEAL5 WILD-TYPE" 
      TCGA-44-2656       TCGA-44-2657       TCGA-44-2659       TCGA-44-2661 
"TCEAL5 WILD-TYPE" "TCEAL5 WILD-TYPE" "TCEAL5 WILD-TYPE" "TCEAL5 WILD-TYPE" 
      TCGA-44-2662       TCGA-44-2665       TCGA-44-2666       TCGA-44-2668 
"TCEAL5 WILD-TYPE" "TCEAL5 WILD-TYPE" "TCEAL5 WILD-TYPE" "TCEAL5 WILD-TYPE" 
      TCGA-44-3396       TCGA-44-3398       TCGA-44-3918       TCGA-44-3919 
"TCEAL5 WILD-TYPE" "TCEAL5 WILD-TYPE" "TCEAL5 WILD-TYPE" "TCEAL5 WILD-TYPE" 
      TCGA-44-4112       TCGA-44-5643       TCGA-44-5645       TCGA-44-6144 
"TCEAL5 WILD-TYPE" "TCEAL5 WILD-TYPE" "TCEAL5 WILD-TYPE"   "TCEAL5 MUTATED" 
      TCGA-44-6145       TCGA-44-6146       TCGA-44-6147       TCGA-44-6148 
"TCEAL5 WILD-TYPE" "TCEAL5 WILD-TYPE" "TCEAL5 WILD-TYPE" "TCEAL5 WILD-TYPE" 
      TCGA-44-6774       TCGA-44-6775       TCGA-44-6776       TCGA-44-6777 
"TCEAL5 WILD-TYPE" "TCEAL5 WILD-TYPE"   "TCEAL5 MUTATED" "TCEAL5 WILD-TYPE" 
      TCGA-44-6778       TCGA-44-6779       TCGA-49-4486       TCGA-49-4487 
"TCEAL5 WILD-TYPE" "TCEAL5 WILD-TYPE" "TCEAL5 WILD-TYPE" "TCEAL5 WILD-TYPE" 
      TCGA-49-4488       TCGA-49-4490       TCGA-49-4494       TCGA-49-4501 
"TCEAL5 WILD-TYPE" "TCEAL5 WILD-TYPE" "TCEAL5 WILD-TYPE" "TCEAL5 WILD-TYPE" 
      TCGA-49-4505       TCGA-49-4506       TCGA-49-4507       TCGA-49-4510 
"TCEAL5 WILD-TYPE" "TCEAL5 WILD-TYPE" "TCEAL5 WILD-TYPE" "TCEAL5 WILD-TYPE" 
      TCGA-49-4512       TCGA-49-4514       TCGA-49-6742       TCGA-49-6743 
"TCEAL5 WILD-TYPE" "TCEAL5 WILD-TYPE" "TCEAL5 WILD-TYPE" "TCEAL5 WILD-TYPE" 
      TCGA-49-6744       TCGA-49-6745       TCGA-50-5044       TCGA-50-5045 
"TCEAL5 WILD-TYPE" "TCEAL5 WILD-TYPE" "TCEAL5 WILD-TYPE" "TCEAL5 WILD-TYPE" 
      TCGA-50-5049       TCGA-50-5051       TCGA-50-5055       TCGA-50-5066 
"TCEAL5 WILD-TYPE" "TCEAL5 WILD-TYPE" "TCEAL5 WILD-TYPE" "TCEAL5 WILD-TYPE" 
      TCGA-50-5068       TCGA-50-5072       TCGA-50-5930       TCGA-50-5931 
"TCEAL5 WILD-TYPE" "TCEAL5 WILD-TYPE" "TCEAL5 WILD-TYPE" "TCEAL5 WILD-TYPE" 
      TCGA-50-5932       TCGA-50-5933       TCGA-50-5935       TCGA-50-5936 
"TCEAL5 WILD-TYPE" "TCEAL5 WILD-TYPE" "TCEAL5 WILD-TYPE" "TCEAL5 WILD-TYPE" 
      TCGA-50-5939       TCGA-50-5941       TCGA-50-5942       TCGA-50-5944 
"TCEAL5 WILD-TYPE" "TCEAL5 WILD-TYPE" "TCEAL5 WILD-TYPE" "TCEAL5 WILD-TYPE" 
      TCGA-50-5946       TCGA-50-6590       TCGA-50-6591       TCGA-50-6592 
"TCEAL5 WILD-TYPE" "TCEAL5 WILD-TYPE" "TCEAL5 WILD-TYPE" "TCEAL5 WILD-TYPE" 
      TCGA-50-6593       TCGA-50-6594       TCGA-50-6595       TCGA-50-6597 
"TCEAL5 WILD-TYPE" "TCEAL5 WILD-TYPE" "TCEAL5 WILD-TYPE" "TCEAL5 WILD-TYPE" 
      TCGA-55-1592       TCGA-55-1594       TCGA-55-1595       TCGA-55-1596 
"TCEAL5 WILD-TYPE" "TCEAL5 WILD-TYPE" "TCEAL5 WILD-TYPE" "TCEAL5 WILD-TYPE" 
      TCGA-55-5899       TCGA-55-6543       TCGA-55-6642       TCGA-55-6712 
"TCEAL5 WILD-TYPE" "TCEAL5 WILD-TYPE" "TCEAL5 WILD-TYPE" "TCEAL5 WILD-TYPE" 
      TCGA-64-1676       TCGA-64-1677       TCGA-64-1678       TCGA-64-1680 
"TCEAL5 WILD-TYPE" "TCEAL5 WILD-TYPE" "TCEAL5 WILD-TYPE" "TCEAL5 WILD-TYPE" 
      TCGA-64-5774       TCGA-64-5775       TCGA-64-5778       TCGA-64-5779 
"TCEAL5 WILD-TYPE" "TCEAL5 WILD-TYPE" "TCEAL5 WILD-TYPE" "TCEAL5 WILD-TYPE" 
      TCGA-64-5781       TCGA-64-5815       TCGA-67-3770       TCGA-67-3771 
"TCEAL5 WILD-TYPE" "TCEAL5 WILD-TYPE" "TCEAL5 WILD-TYPE" "TCEAL5 WILD-TYPE" 
      TCGA-67-3772       TCGA-67-3773       TCGA-67-3774       TCGA-67-6215 
"TCEAL5 WILD-TYPE" "TCEAL5 WILD-TYPE" "TCEAL5 WILD-TYPE" "TCEAL5 WILD-TYPE" 
      TCGA-67-6216       TCGA-67-6217       TCGA-71-6725       TCGA-73-4658 
"TCEAL5 WILD-TYPE" "TCEAL5 WILD-TYPE" "TCEAL5 WILD-TYPE" "TCEAL5 WILD-TYPE" 
      TCGA-73-4659       TCGA-73-4662       TCGA-73-4666       TCGA-73-4668 
"TCEAL5 WILD-TYPE"   "TCEAL5 MUTATED" "TCEAL5 WILD-TYPE" "TCEAL5 WILD-TYPE" 
      TCGA-73-4670       TCGA-73-4675       TCGA-73-4676       TCGA-73-4677 
"TCEAL5 WILD-TYPE" "TCEAL5 WILD-TYPE" "TCEAL5 WILD-TYPE" "TCEAL5 WILD-TYPE" 
      TCGA-91-6828       TCGA-91-6829       TCGA-91-6831       TCGA-91-6835 
"TCEAL5 WILD-TYPE" "TCEAL5 WILD-TYPE" "TCEAL5 WILD-TYPE" "TCEAL5 WILD-TYPE" 
      TCGA-91-6836 
"TCEAL5 WILD-TYPE" 
      TCGA-05-4249       TCGA-05-4250       TCGA-05-4382       TCGA-05-4384 
"TCEAL5 WILD-TYPE" "TCEAL5 WILD-TYPE" "TCEAL5 WILD-TYPE" "TCEAL5 WILD-TYPE" 
      TCGA-05-4390       TCGA-05-4396       TCGA-05-4397       TCGA-05-4398 
"TCEAL5 WILD-TYPE" "TCEAL5 WILD-TYPE" "TCEAL5 WILD-TYPE" "TCEAL5 WILD-TYPE" 
      TCGA-05-4402       TCGA-05-4405       TCGA-05-4415       TCGA-05-4417 
"TCEAL5 WILD-TYPE" "TCEAL5 WILD-TYPE" "TCEAL5 WILD-TYPE" "TCEAL5 WILD-TYPE" 
      TCGA-05-4418       TCGA-05-4420       TCGA-05-4424       TCGA-05-4426 
"TCEAL5 WILD-TYPE" "TCEAL5 WILD-TYPE" "TCEAL5 WILD-TYPE" "TCEAL5 WILD-TYPE" 
      TCGA-05-4427       TCGA-05-4430       TCGA-05-4432       TCGA-05-4433 
"TCEAL5 WILD-TYPE" "TCEAL5 WILD-TYPE" "TCEAL5 WILD-TYPE" "TCEAL5 WILD-TYPE" 
      TCGA-05-4434       TCGA-05-5420       TCGA-05-5423       TCGA-05-5425 
"TCEAL5 WILD-TYPE" "TCEAL5 WILD-TYPE" "TCEAL5 WILD-TYPE" "TCEAL5 WILD-TYPE" 
      TCGA-05-5429       TCGA-05-5715       TCGA-35-3615       TCGA-35-4122 
"TCEAL5 WILD-TYPE" "TCEAL5 WILD-TYPE" "TCEAL5 WILD-TYPE" "TCEAL5 WILD-TYPE" 
      TCGA-35-4123       TCGA-35-5375       TCGA-38-4625       TCGA-38-4626 
"TCEAL5 WILD-TYPE" "TCEAL5 WILD-TYPE" "TCEAL5 WILD-TYPE" "TCEAL5 WILD-TYPE" 
      TCGA-38-4627       TCGA-38-4628       TCGA-38-4629       TCGA-38-4630 
"TCEAL5 WILD-TYPE" "TCEAL5 WILD-TYPE" "TCEAL5 WILD-TYPE" "TCEAL5 WILD-TYPE" 
      TCGA-38-4631       TCGA-38-4632       TCGA-38-6178       TCGA-44-2655 
"TCEAL5 WILD-TYPE" "TCEAL5 WILD-TYPE" "TCEAL5 WILD-TYPE" "TCEAL5 WILD-TYPE" 
      TCGA-44-2656       TCGA-44-2657       TCGA-44-2659       TCGA-44-2661 
"TCEAL5 WILD-TYPE" "TCEAL5 WILD-TYPE" "TCEAL5 WILD-TYPE" "TCEAL5 WILD-TYPE" 
      TCGA-44-2662       TCGA-44-2665       TCGA-44-2666       TCGA-44-2668 
"TCEAL5 WILD-TYPE" "TCEAL5 WILD-TYPE" "TCEAL5 WILD-TYPE" "TCEAL5 WILD-TYPE" 
      TCGA-44-3396       TCGA-44-3398       TCGA-44-3918       TCGA-44-3919 
"TCEAL5 WILD-TYPE" "TCEAL5 WILD-TYPE" "TCEAL5 WILD-TYPE" "TCEAL5 WILD-TYPE" 
      TCGA-44-4112       TCGA-44-5643       TCGA-44-5645       TCGA-44-6144 
"TCEAL5 WILD-TYPE" "TCEAL5 WILD-TYPE" "TCEAL5 WILD-TYPE"   "TCEAL5 MUTATED" 
      TCGA-44-6145       TCGA-44-6146       TCGA-44-6147       TCGA-44-6148 
"TCEAL5 WILD-TYPE" "TCEAL5 WILD-TYPE" "TCEAL5 WILD-TYPE" "TCEAL5 WILD-TYPE" 
      TCGA-44-6774       TCGA-44-6775       TCGA-44-6776       TCGA-44-6777 
"TCEAL5 WILD-TYPE" "TCEAL5 WILD-TYPE"   "TCEAL5 MUTATED" "TCEAL5 WILD-TYPE" 
      TCGA-44-6778       TCGA-44-6779       TCGA-49-4486       TCGA-49-4487 
"TCEAL5 WILD-TYPE" "TCEAL5 WILD-TYPE" "TCEAL5 WILD-TYPE" "TCEAL5 WILD-TYPE" 
      TCGA-49-4488       TCGA-49-4490       TCGA-49-4494       TCGA-49-4501 
"TCEAL5 WILD-TYPE" "TCEAL5 WILD-TYPE" "TCEAL5 WILD-TYPE" "TCEAL5 WILD-TYPE" 
      TCGA-49-4505       TCGA-49-4506       TCGA-49-4507       TCGA-49-4510 
"TCEAL5 WILD-TYPE" "TCEAL5 WILD-TYPE" "TCEAL5 WILD-TYPE" "TCEAL5 WILD-TYPE" 
      TCGA-49-4512       TCGA-49-4514       TCGA-49-6742       TCGA-49-6743 
"TCEAL5 WILD-TYPE" "TCEAL5 WILD-TYPE" "TCEAL5 WILD-TYPE" "TCEAL5 WILD-TYPE" 
      TCGA-49-6744       TCGA-49-6745       TCGA-50-5044       TCGA-50-5045 
"TCEAL5 WILD-TYPE" "TCEAL5 WILD-TYPE" "TCEAL5 WILD-TYPE" "TCEAL5 WILD-TYPE" 
      TCGA-50-5049       TCGA-50-5051       TCGA-50-5055       TCGA-50-5066 
"TCEAL5 WILD-TYPE" "TCEAL5 WILD-TYPE" "TCEAL5 WILD-TYPE" "TCEAL5 WILD-TYPE" 
      TCGA-50-5068       TCGA-50-5072       TCGA-50-5930       TCGA-50-5931 
"TCEAL5 WILD-TYPE" "TCEAL5 WILD-TYPE" "TCEAL5 WILD-TYPE" "TCEAL5 WILD-TYPE" 
      TCGA-50-5932       TCGA-50-5933       TCGA-50-5935       TCGA-50-5936 
"TCEAL5 WILD-TYPE" "TCEAL5 WILD-TYPE" "TCEAL5 WILD-TYPE" "TCEAL5 WILD-TYPE" 
      TCGA-50-5939       TCGA-50-5941       TCGA-50-5942       TCGA-50-5944 
"TCEAL5 WILD-TYPE" "TCEAL5 WILD-TYPE" "TCEAL5 WILD-TYPE" "TCEAL5 WILD-TYPE" 
      TCGA-50-5946       TCGA-50-6590       TCGA-50-6591       TCGA-50-6592 
"TCEAL5 WILD-TYPE" "TCEAL5 WILD-TYPE" "TCEAL5 WILD-TYPE" "TCEAL5 WILD-TYPE" 
      TCGA-50-6593       TCGA-50-6594       TCGA-50-6595       TCGA-50-6597 
"TCEAL5 WILD-TYPE" "TCEAL5 WILD-TYPE" "TCEAL5 WILD-TYPE" "TCEAL5 WILD-TYPE" 
      TCGA-55-1592       TCGA-55-1594       TCGA-55-1595       TCGA-55-1596 
"TCEAL5 WILD-TYPE" "TCEAL5 WILD-TYPE" "TCEAL5 WILD-TYPE" "TCEAL5 WILD-TYPE" 
      TCGA-55-5899       TCGA-55-6543       TCGA-55-6642       TCGA-55-6712 
"TCEAL5 WILD-TYPE" "TCEAL5 WILD-TYPE" "TCEAL5 WILD-TYPE" "TCEAL5 WILD-TYPE" 
      TCGA-64-1676       TCGA-64-1677       TCGA-64-1678       TCGA-64-1680 
"TCEAL5 WILD-TYPE" "TCEAL5 WILD-TYPE" "TCEAL5 WILD-TYPE" "TCEAL5 WILD-TYPE" 
      TCGA-64-5774       TCGA-64-5775       TCGA-64-5778       TCGA-64-5779 
"TCEAL5 WILD-TYPE" "TCEAL5 WILD-TYPE" "TCEAL5 WILD-TYPE" "TCEAL5 WILD-TYPE" 
      TCGA-64-5781       TCGA-64-5815       TCGA-67-3770       TCGA-67-3771 
"TCEAL5 WILD-TYPE" "TCEAL5 WILD-TYPE" "TCEAL5 WILD-TYPE" "TCEAL5 WILD-TYPE" 
      TCGA-67-3772       TCGA-67-3773       TCGA-67-3774       TCGA-67-6215 
"TCEAL5 WILD-TYPE" "TCEAL5 WILD-TYPE" "TCEAL5 WILD-TYPE" "TCEAL5 WILD-TYPE" 
      TCGA-67-6216       TCGA-67-6217       TCGA-71-6725       TCGA-73-4658 
"TCEAL5 WILD-TYPE" "TCEAL5 WILD-TYPE" "TCEAL5 WILD-TYPE" "TCEAL5 WILD-TYPE" 
      TCGA-73-4659       TCGA-73-4662       TCGA-73-4666       TCGA-73-4668 
"TCEAL5 WILD-TYPE"   "TCEAL5 MUTATED" "TCEAL5 WILD-TYPE" "TCEAL5 WILD-TYPE" 
      TCGA-73-4670       TCGA-73-4675       TCGA-73-4676       TCGA-73-4677 
"TCEAL5 WILD-TYPE" "TCEAL5 WILD-TYPE" "TCEAL5 WILD-TYPE" "TCEAL5 WILD-TYPE" 
      TCGA-91-6828       TCGA-91-6829       TCGA-91-6831       TCGA-91-6835 
"TCEAL5 WILD-TYPE" "TCEAL5 WILD-TYPE" "TCEAL5 WILD-TYPE" "TCEAL5 WILD-TYPE" 
      TCGA-91-6836 
"TCEAL5 WILD-TYPE" 
      TCGA-05-4249       TCGA-05-4250       TCGA-05-4382       TCGA-05-4384 
"TCEAL5 WILD-TYPE" "TCEAL5 WILD-TYPE" "TCEAL5 WILD-TYPE" "TCEAL5 WILD-TYPE" 
      TCGA-05-4390       TCGA-05-4396       TCGA-05-4397       TCGA-05-4398 
"TCEAL5 WILD-TYPE" "TCEAL5 WILD-TYPE" "TCEAL5 WILD-TYPE" "TCEAL5 WILD-TYPE" 
      TCGA-05-4402       TCGA-05-4405       TCGA-05-4415       TCGA-05-4417 
"TCEAL5 WILD-TYPE" "TCEAL5 WILD-TYPE" "TCEAL5 WILD-TYPE" "TCEAL5 WILD-TYPE" 
      TCGA-05-4418       TCGA-05-4420       TCGA-05-4424       TCGA-05-4426 
"TCEAL5 WILD-TYPE" "TCEAL5 WILD-TYPE" "TCEAL5 WILD-TYPE" "TCEAL5 WILD-TYPE" 
      TCGA-05-4427       TCGA-05-4430       TCGA-05-4432       TCGA-05-4433 
"TCEAL5 WILD-TYPE" "TCEAL5 WILD-TYPE" "TCEAL5 WILD-TYPE" "TCEAL5 WILD-TYPE" 
      TCGA-05-4434       TCGA-05-5420       TCGA-05-5423       TCGA-05-5425 
"TCEAL5 WILD-TYPE" "TCEAL5 WILD-TYPE" "TCEAL5 WILD-TYPE" "TCEAL5 WILD-TYPE" 
      TCGA-05-5429       TCGA-05-5715       TCGA-35-3615       TCGA-35-4122 
"TCEAL5 WILD-TYPE" "TCEAL5 WILD-TYPE" "TCEAL5 WILD-TYPE" "TCEAL5 WILD-TYPE" 
      TCGA-35-4123       TCGA-35-5375       TCGA-38-4625       TCGA-38-4626 
"TCEAL5 WILD-TYPE" "TCEAL5 WILD-TYPE" "TCEAL5 WILD-TYPE" "TCEAL5 WILD-TYPE" 
      TCGA-38-4627       TCGA-38-4628       TCGA-38-4629       TCGA-38-4630 
"TCEAL5 WILD-TYPE" "TCEAL5 WILD-TYPE" "TCEAL5 WILD-TYPE" "TCEAL5 WILD-TYPE" 
      TCGA-38-4631       TCGA-38-4632       TCGA-38-6178       TCGA-44-2655 
"TCEAL5 WILD-TYPE" "TCEAL5 WILD-TYPE" "TCEAL5 WILD-TYPE" "TCEAL5 WILD-TYPE" 
      TCGA-44-2656       TCGA-44-2657       TCGA-44-2659       TCGA-44-2661 
"TCEAL5 WILD-TYPE" "TCEAL5 WILD-TYPE" "TCEAL5 WILD-TYPE" "TCEAL5 WILD-TYPE" 
      TCGA-44-2662       TCGA-44-2665       TCGA-44-2666       TCGA-44-2668 
"TCEAL5 WILD-TYPE" "TCEAL5 WILD-TYPE" "TCEAL5 WILD-TYPE" "TCEAL5 WILD-TYPE" 
      TCGA-44-3396       TCGA-44-3398       TCGA-44-3918       TCGA-44-3919 
"TCEAL5 WILD-TYPE" "TCEAL5 WILD-TYPE" "TCEAL5 WILD-TYPE" "TCEAL5 WILD-TYPE" 
      TCGA-44-4112       TCGA-44-5643       TCGA-44-5645       TCGA-44-6144 
"TCEAL5 WILD-TYPE" "TCEAL5 WILD-TYPE" "TCEAL5 WILD-TYPE"   "TCEAL5 MUTATED" 
      TCGA-44-6145       TCGA-44-6146       TCGA-44-6147       TCGA-44-6148 
"TCEAL5 WILD-TYPE" "TCEAL5 WILD-TYPE" "TCEAL5 WILD-TYPE" "TCEAL5 WILD-TYPE" 
      TCGA-44-6774       TCGA-44-6775       TCGA-44-6776       TCGA-44-6777 
"TCEAL5 WILD-TYPE" "TCEAL5 WILD-TYPE"   "TCEAL5 MUTATED" "TCEAL5 WILD-TYPE" 
      TCGA-44-6778       TCGA-44-6779       TCGA-49-4486       TCGA-49-4487 
"TCEAL5 WILD-TYPE" "TCEAL5 WILD-TYPE" "TCEAL5 WILD-TYPE" "TCEAL5 WILD-TYPE" 
      TCGA-49-4488       TCGA-49-4490       TCGA-49-4494       TCGA-49-4501 
"TCEAL5 WILD-TYPE" "TCEAL5 WILD-TYPE" "TCEAL5 WILD-TYPE" "TCEAL5 WILD-TYPE" 
      TCGA-49-4505       TCGA-49-4506       TCGA-49-4507       TCGA-49-4510 
"TCEAL5 WILD-TYPE" "TCEAL5 WILD-TYPE" "TCEAL5 WILD-TYPE" "TCEAL5 WILD-TYPE" 
      TCGA-49-4512       TCGA-49-4514       TCGA-49-6742       TCGA-49-6743 
"TCEAL5 WILD-TYPE" "TCEAL5 WILD-TYPE" "TCEAL5 WILD-TYPE" "TCEAL5 WILD-TYPE" 
      TCGA-49-6744       TCGA-49-6745       TCGA-50-5044       TCGA-50-5045 
"TCEAL5 WILD-TYPE" "TCEAL5 WILD-TYPE" "TCEAL5 WILD-TYPE" "TCEAL5 WILD-TYPE" 
      TCGA-50-5049       TCGA-50-5051       TCGA-50-5055       TCGA-50-5066 
"TCEAL5 WILD-TYPE" "TCEAL5 WILD-TYPE" "TCEAL5 WILD-TYPE" "TCEAL5 WILD-TYPE" 
      TCGA-50-5068       TCGA-50-5072       TCGA-50-5930       TCGA-50-5931 
"TCEAL5 WILD-TYPE" "TCEAL5 WILD-TYPE" "TCEAL5 WILD-TYPE" "TCEAL5 WILD-TYPE" 
      TCGA-50-5932       TCGA-50-5933       TCGA-50-5935       TCGA-50-5936 
"TCEAL5 WILD-TYPE" "TCEAL5 WILD-TYPE" "TCEAL5 WILD-TYPE" "TCEAL5 WILD-TYPE" 
      TCGA-50-5939       TCGA-50-5941       TCGA-50-5942       TCGA-50-5944 
"TCEAL5 WILD-TYPE" "TCEAL5 WILD-TYPE" "TCEAL5 WILD-TYPE" "TCEAL5 WILD-TYPE" 
      TCGA-50-5946       TCGA-50-6590       TCGA-50-6591       TCGA-50-6592 
"TCEAL5 WILD-TYPE" "TCEAL5 WILD-TYPE" "TCEAL5 WILD-TYPE" "TCEAL5 WILD-TYPE" 
      TCGA-50-6593       TCGA-50-6594       TCGA-50-6595       TCGA-50-6597 
"TCEAL5 WILD-TYPE" "TCEAL5 WILD-TYPE" "TCEAL5 WILD-TYPE" "TCEAL5 WILD-TYPE" 
      TCGA-55-1592       TCGA-55-1594       TCGA-55-1595       TCGA-55-1596 
"TCEAL5 WILD-TYPE" "TCEAL5 WILD-TYPE" "TCEAL5 WILD-TYPE" "TCEAL5 WILD-TYPE" 
      TCGA-55-5899       TCGA-55-6543       TCGA-55-6642       TCGA-55-6712 
"TCEAL5 WILD-TYPE" "TCEAL5 WILD-TYPE" "TCEAL5 WILD-TYPE" "TCEAL5 WILD-TYPE" 
      TCGA-64-1676       TCGA-64-1677       TCGA-64-1678       TCGA-64-1680 
"TCEAL5 WILD-TYPE" "TCEAL5 WILD-TYPE" "TCEAL5 WILD-TYPE" "TCEAL5 WILD-TYPE" 
      TCGA-64-5774       TCGA-64-5775       TCGA-64-5778       TCGA-64-5779 
"TCEAL5 WILD-TYPE" "TCEAL5 WILD-TYPE" "TCEAL5 WILD-TYPE" "TCEAL5 WILD-TYPE" 
      TCGA-64-5781       TCGA-64-5815       TCGA-67-3770       TCGA-67-3771 
"TCEAL5 WILD-TYPE" "TCEAL5 WILD-TYPE" "TCEAL5 WILD-TYPE" "TCEAL5 WILD-TYPE" 
      TCGA-67-3772       TCGA-67-3773       TCGA-67-3774       TCGA-67-6215 
"TCEAL5 WILD-TYPE" "TCEAL5 WILD-TYPE" "TCEAL5 WILD-TYPE" "TCEAL5 WILD-TYPE" 
      TCGA-67-6216       TCGA-67-6217       TCGA-71-6725       TCGA-73-4658 
"TCEAL5 WILD-TYPE" "TCEAL5 WILD-TYPE" "TCEAL5 WILD-TYPE" "TCEAL5 WILD-TYPE" 
      TCGA-73-4659       TCGA-73-4662       TCGA-73-4666       TCGA-73-4668 
"TCEAL5 WILD-TYPE"   "TCEAL5 MUTATED" "TCEAL5 WILD-TYPE" "TCEAL5 WILD-TYPE" 
      TCGA-73-4670       TCGA-73-4675       TCGA-73-4676       TCGA-73-4677 
"TCEAL5 WILD-TYPE" "TCEAL5 WILD-TYPE" "TCEAL5 WILD-TYPE" "TCEAL5 WILD-TYPE" 
      TCGA-91-6828       TCGA-91-6829       TCGA-91-6831       TCGA-91-6835 
"TCEAL5 WILD-TYPE" "TCEAL5 WILD-TYPE" "TCEAL5 WILD-TYPE" "TCEAL5 WILD-TYPE" 
      TCGA-91-6836 
"TCEAL5 WILD-TYPE" 
[1] "hr="     "2.6e+07"
D185V2, continuous
D185V3, binary
[1] "tbl2"
                  cls
clus               [,1] [,2]
  TCEAL5 MUTATED      3    2
  TCEAL5 WILD-TYPE   90   77
        clus
vv       TCEAL5 MUTATED TCEAL5 WILD-TYPE
  FEMALE              3               90
  MALE                2               77
D185V4, continuous
[1] "Remove cluster labels:" "TCEAL5 MUTATED"        
clus
  TCEAL5 MUTATED TCEAL5 WILD-TYPE 
               1               11 
      TCGA-35-4122       TCGA-35-4123       TCGA-35-5375       TCGA-64-1677 
"TCEAL5 WILD-TYPE" "TCEAL5 WILD-TYPE" "TCEAL5 WILD-TYPE" "TCEAL5 WILD-TYPE" 
      TCGA-64-5778       TCGA-71-6725       TCGA-73-4659       TCGA-73-4666 
"TCEAL5 WILD-TYPE" "TCEAL5 WILD-TYPE" "TCEAL5 WILD-TYPE" "TCEAL5 WILD-TYPE" 
      TCGA-73-4668       TCGA-73-4676       TCGA-75-5122 
"TCEAL5 WILD-TYPE" "TCEAL5 WILD-TYPE" "TCEAL5 WILD-TYPE" 
D185V5, multiclass
D185V6, multiclass
    clus
vv   TCEAL5 MUTATED TCEAL5 WILD-TYPE
  T1              3               38
  T2              1              107
  T3              1               13
  T4              0                8
D185V7, multiclass
       clus
vv      TCEAL5 MUTATED TCEAL5 WILD-TYPE
  N0                 4               91
  N1                 1               36
  N2+N3              0               35
D185V8, multiclass
    clus
vv   TCEAL5 MUTATED TCEAL5 WILD-TYPE
  M0              3              134
  M1              0                9
  MX              2               20
D185V9, multiclass
     clus
vv    TCEAL5 MUTATED TCEAL5 WILD-TYPE
  I                3               85
  II               2               31
  III              0               39
  IV               0                9
D185V10, binary
[1] "tbl2"
                  cls
clus               [,1] [,2]
  TCEAL5 MUTATED      1    4
  TCEAL5 WILD-TYPE   15  152
     clus
vv    TCEAL5 MUTATED TCEAL5 WILD-TYPE
  NO               1               15
  YES              4              152
D185V11, continuous
D185V12, continuous
D185V13, multiclass
                                             clus
vv                                            TCEAL5 MUTATED TCEAL5 WILD-TYPE
  CURRENT REFORMED SMOKER FOR < OR = 15 YEARS              1               61
  CURRENT REFORMED SMOKER FOR > 15 YEARS                   2               44
  CURRENT SMOKER                                           2               26
  LIFELONG NON-SMOKER                                      0               24
D185V14, continuous

Clustering(186) Variable = KCNS2 MUTATION ANALYSIS
D186V1, survival
                 sevent
clus2              0  1
  KCNS2 MUTATED    0  4
  KCNS2 WILD-TYPE 99 46
  KCNS2 MUTATED KCNS2 WILD-TYPE 
              4             145 
  KCNS2 MUTATED KCNS2 WILD-TYPE 
              4              46 
$`KCNS2 MUTATED`
TCGA-05-4396 TCGA-38-4629 TCGA-49-4487 TCGA-50-5933 
        9.96        28.37        28.11        77.88 

$`KCNS2 WILD-TYPE`
TCGA-05-4249 TCGA-05-4250 TCGA-05-4382 TCGA-05-4384 TCGA-05-4390 TCGA-05-4397 
       38.07         3.98        19.92        14.01        37.02        24.03 
TCGA-05-4398 TCGA-05-4402 TCGA-05-4405 TCGA-05-4415 TCGA-05-4417 TCGA-05-4418 
       47.05         8.02        20.05         2.96        14.93         8.98 
TCGA-05-4420 TCGA-05-4424 TCGA-05-4426 TCGA-05-4427 TCGA-05-4430 TCGA-05-4432 
       29.95        30.02        26.01        26.01        25.02        25.02 
TCGA-05-4433 TCGA-05-4434 TCGA-05-5420 TCGA-05-5423 TCGA-05-5425 TCGA-05-5429 
       24.00        15.02         1.02         4.96         2.96         0.99 
TCGA-05-5715 TCGA-35-3615 TCGA-35-4122 TCGA-35-4123 TCGA-35-5375 TCGA-38-4625 
        2.04         0.46         7.36         5.95         8.68        47.61 
TCGA-38-4626 TCGA-38-4627 TCGA-38-4628 TCGA-38-4630 TCGA-38-4631 TCGA-38-4632 
       85.32        37.71        49.02        35.28        11.64        44.61 
TCGA-38-6178 TCGA-44-2655 TCGA-44-2656 TCGA-44-2657 TCGA-44-2659 TCGA-44-2661 
        5.19        18.87        19.10        13.15        17.39         3.39 
TCGA-44-2662 TCGA-44-2665 TCGA-44-2666 TCGA-44-2668 TCGA-44-3396 TCGA-44-3398 
       15.78        13.15         3.19         8.09        10.22         8.32 
TCGA-44-3918 TCGA-44-3919 TCGA-44-4112 TCGA-44-5643 TCGA-44-5645 TCGA-44-6144 
        6.44         6.21         4.60         3.48         6.84         0.30 
TCGA-44-6145 TCGA-44-6146 TCGA-44-6147 TCGA-44-6148 TCGA-44-6774 TCGA-44-6775 
        3.35         9.93         7.76         3.12         5.42         2.70 
TCGA-44-6776 TCGA-44-6777 TCGA-44-6778 TCGA-44-6779 TCGA-49-4486 TCGA-49-4488 
       63.72        32.45        36.49        16.41        76.21        28.57 
TCGA-49-4490 TCGA-49-4494 TCGA-49-4501 TCGA-49-4505 TCGA-49-4506 TCGA-49-4507 
       12.66        35.54        46.72        14.07        32.84         8.81 
TCGA-49-4510 TCGA-49-4512 TCGA-49-4514 TCGA-49-6742 TCGA-49-6743 TCGA-49-6744 
       29.46        29.75        43.20        15.02        12.13        12.99 
TCGA-49-6745 TCGA-50-5044 TCGA-50-5045 TCGA-50-5049 TCGA-50-5051 TCGA-50-5055 
        4.93        20.48        71.47        48.82        14.96        25.81 
TCGA-50-5066 TCGA-50-5068 TCGA-50-5072 TCGA-50-5930 TCGA-50-5931 TCGA-50-5932 
        9.76        49.28         8.05         9.27         8.78        35.87 
TCGA-50-5935 TCGA-50-5936 TCGA-50-5939 TCGA-50-5941 TCGA-50-5942 TCGA-50-5944 
       21.47         8.45        15.12         9.37         4.44        12.26 
TCGA-50-5946 TCGA-50-6590 TCGA-50-6591 TCGA-50-6592 TCGA-50-6593 TCGA-50-6594 
       11.47        42.31         3.88        25.51        11.05        12.16 
TCGA-50-6595 TCGA-50-6597 TCGA-55-1592 TCGA-55-1594 TCGA-55-1595 TCGA-55-1596 
        6.21        33.37        23.05        38.73        48.62        45.17 
TCGA-55-5899 TCGA-55-6543 TCGA-55-6642 TCGA-55-6712 TCGA-64-1676 TCGA-64-1677 
        2.86         0.07        32.61         0.79        56.81        20.65 
TCGA-64-1678 TCGA-64-1680 TCGA-64-5774 TCGA-64-5775 TCGA-64-5778 TCGA-64-5779 
       39.09        37.02        83.84         0.10        30.44        16.67 
TCGA-64-5781 TCGA-64-5815 TCGA-67-3770 TCGA-67-3771 TCGA-67-3772 TCGA-67-3773 
       39.52         7.33         0.99         1.97         0.59         2.04 
TCGA-67-3774 TCGA-67-6215 TCGA-67-6216 TCGA-67-6217 TCGA-71-6725 TCGA-73-4658 
        0.59         0.89         0.69        13.87         2.01        52.57 
TCGA-73-4659 TCGA-73-4662 TCGA-73-4666 TCGA-73-4668 TCGA-73-4670 TCGA-73-4675 
       23.38        29.95        20.28        15.35         0.46         1.32 
TCGA-73-4676 TCGA-73-4677 TCGA-91-6828 TCGA-91-6829 TCGA-91-6831 TCGA-91-6835 
        4.01         1.25         1.22        41.33         1.28         1.15 
TCGA-91-6836 
        0.36 

  KCNS2 MUTATED KCNS2 WILD-TYPE 
           9.96            0.07 
  KCNS2 MUTATED KCNS2 WILD-TYPE 
          77.88           85.32 
  KCNS2 MUTATED KCNS2 WILD-TYPE 
          28.24           13.15 
[1] "10.0 - 77.9 (28.2)" "0.1 - 85.3 (13.2)" 
     TCGA-05-4249      TCGA-05-4250      TCGA-05-4382      TCGA-05-4384 
"KCNS2 WILD-TYPE" "KCNS2 WILD-TYPE" "KCNS2 WILD-TYPE" "KCNS2 WILD-TYPE" 
     TCGA-05-4390      TCGA-05-4396      TCGA-05-4397      TCGA-05-4398 
"KCNS2 WILD-TYPE"   "KCNS2 MUTATED" "KCNS2 WILD-TYPE" "KCNS2 WILD-TYPE" 
     TCGA-05-4402      TCGA-05-4405      TCGA-05-4415      TCGA-05-4417 
"KCNS2 WILD-TYPE" "KCNS2 WILD-TYPE" "KCNS2 WILD-TYPE" "KCNS2 WILD-TYPE" 
     TCGA-05-4418      TCGA-05-4420      TCGA-05-4424      TCGA-05-4426 
"KCNS2 WILD-TYPE" "KCNS2 WILD-TYPE" "KCNS2 WILD-TYPE" "KCNS2 WILD-TYPE" 
     TCGA-05-4427      TCGA-05-4430      TCGA-05-4432      TCGA-05-4433 
"KCNS2 WILD-TYPE" "KCNS2 WILD-TYPE" "KCNS2 WILD-TYPE" "KCNS2 WILD-TYPE" 
     TCGA-05-4434      TCGA-05-5420      TCGA-05-5423      TCGA-05-5425 
"KCNS2 WILD-TYPE" "KCNS2 WILD-TYPE" "KCNS2 WILD-TYPE" "KCNS2 WILD-TYPE" 
     TCGA-05-5429      TCGA-05-5715      TCGA-35-3615      TCGA-35-4122 
"KCNS2 WILD-TYPE" "KCNS2 WILD-TYPE" "KCNS2 WILD-TYPE" "KCNS2 WILD-TYPE" 
     TCGA-35-4123      TCGA-35-5375      TCGA-38-4625      TCGA-38-4626 
"KCNS2 WILD-TYPE" "KCNS2 WILD-TYPE" "KCNS2 WILD-TYPE" "KCNS2 WILD-TYPE" 
     TCGA-38-4627      TCGA-38-4628      TCGA-38-4629      TCGA-38-4630 
"KCNS2 WILD-TYPE" "KCNS2 WILD-TYPE"   "KCNS2 MUTATED" "KCNS2 WILD-TYPE" 
     TCGA-38-4631      TCGA-38-4632      TCGA-38-6178      TCGA-44-2655 
"KCNS2 WILD-TYPE" "KCNS2 WILD-TYPE" "KCNS2 WILD-TYPE" "KCNS2 WILD-TYPE" 
     TCGA-44-2656      TCGA-44-2657      TCGA-44-2659      TCGA-44-2661 
"KCNS2 WILD-TYPE" "KCNS2 WILD-TYPE" "KCNS2 WILD-TYPE" "KCNS2 WILD-TYPE" 
     TCGA-44-2662      TCGA-44-2665      TCGA-44-2666      TCGA-44-2668 
"KCNS2 WILD-TYPE" "KCNS2 WILD-TYPE" "KCNS2 WILD-TYPE" "KCNS2 WILD-TYPE" 
     TCGA-44-3396      TCGA-44-3398      TCGA-44-3918      TCGA-44-3919 
"KCNS2 WILD-TYPE" "KCNS2 WILD-TYPE" "KCNS2 WILD-TYPE" "KCNS2 WILD-TYPE" 
     TCGA-44-4112      TCGA-44-5643      TCGA-44-5645      TCGA-44-6144 
"KCNS2 WILD-TYPE" "KCNS2 WILD-TYPE" "KCNS2 WILD-TYPE" "KCNS2 WILD-TYPE" 
     TCGA-44-6145      TCGA-44-6146      TCGA-44-6147      TCGA-44-6148 
"KCNS2 WILD-TYPE" "KCNS2 WILD-TYPE" "KCNS2 WILD-TYPE" "KCNS2 WILD-TYPE" 
     TCGA-44-6774      TCGA-44-6775      TCGA-44-6776      TCGA-44-6777 
"KCNS2 WILD-TYPE" "KCNS2 WILD-TYPE" "KCNS2 WILD-TYPE" "KCNS2 WILD-TYPE" 
     TCGA-44-6778      TCGA-44-6779      TCGA-49-4486      TCGA-49-4487 
"KCNS2 WILD-TYPE" "KCNS2 WILD-TYPE" "KCNS2 WILD-TYPE"   "KCNS2 MUTATED" 
     TCGA-49-4488      TCGA-49-4490      TCGA-49-4494      TCGA-49-4501 
"KCNS2 WILD-TYPE" "KCNS2 WILD-TYPE" "KCNS2 WILD-TYPE" "KCNS2 WILD-TYPE" 
     TCGA-49-4505      TCGA-49-4506      TCGA-49-4507      TCGA-49-4510 
"KCNS2 WILD-TYPE" "KCNS2 WILD-TYPE" "KCNS2 WILD-TYPE" "KCNS2 WILD-TYPE" 
     TCGA-49-4512      TCGA-49-4514      TCGA-49-6742      TCGA-49-6743 
"KCNS2 WILD-TYPE" "KCNS2 WILD-TYPE" "KCNS2 WILD-TYPE" "KCNS2 WILD-TYPE" 
     TCGA-49-6744      TCGA-49-6745      TCGA-50-5044      TCGA-50-5045 
"KCNS2 WILD-TYPE" "KCNS2 WILD-TYPE" "KCNS2 WILD-TYPE" "KCNS2 WILD-TYPE" 
     TCGA-50-5049      TCGA-50-5051      TCGA-50-5055      TCGA-50-5066 
"KCNS2 WILD-TYPE" "KCNS2 WILD-TYPE" "KCNS2 WILD-TYPE" "KCNS2 WILD-TYPE" 
     TCGA-50-5068      TCGA-50-5072      TCGA-50-5930      TCGA-50-5931 
"KCNS2 WILD-TYPE" "KCNS2 WILD-TYPE" "KCNS2 WILD-TYPE" "KCNS2 WILD-TYPE" 
     TCGA-50-5932      TCGA-50-5933      TCGA-50-5935      TCGA-50-5936 
"KCNS2 WILD-TYPE"   "KCNS2 MUTATED" "KCNS2 WILD-TYPE" "KCNS2 WILD-TYPE" 
     TCGA-50-5939      TCGA-50-5941      TCGA-50-5942      TCGA-50-5944 
"KCNS2 WILD-TYPE" "KCNS2 WILD-TYPE" "KCNS2 WILD-TYPE" "KCNS2 WILD-TYPE" 
     TCGA-50-5946      TCGA-50-6590      TCGA-50-6591      TCGA-50-6592 
"KCNS2 WILD-TYPE" "KCNS2 WILD-TYPE" "KCNS2 WILD-TYPE" "KCNS2 WILD-TYPE" 
     TCGA-50-6593      TCGA-50-6594      TCGA-50-6595      TCGA-50-6597 
"KCNS2 WILD-TYPE" "KCNS2 WILD-TYPE" "KCNS2 WILD-TYPE" "KCNS2 WILD-TYPE" 
     TCGA-55-1592      TCGA-55-1594      TCGA-55-1595      TCGA-55-1596 
"KCNS2 WILD-TYPE" "KCNS2 WILD-TYPE" "KCNS2 WILD-TYPE" "KCNS2 WILD-TYPE" 
     TCGA-55-5899      TCGA-55-6543      TCGA-55-6642      TCGA-55-6712 
"KCNS2 WILD-TYPE" "KCNS2 WILD-TYPE" "KCNS2 WILD-TYPE" "KCNS2 WILD-TYPE" 
     TCGA-64-1676      TCGA-64-1677      TCGA-64-1678      TCGA-64-1680 
"KCNS2 WILD-TYPE" "KCNS2 WILD-TYPE" "KCNS2 WILD-TYPE" "KCNS2 WILD-TYPE" 
     TCGA-64-5774      TCGA-64-5775      TCGA-64-5778      TCGA-64-5779 
"KCNS2 WILD-TYPE" "KCNS2 WILD-TYPE" "KCNS2 WILD-TYPE" "KCNS2 WILD-TYPE" 
     TCGA-64-5781      TCGA-64-5815      TCGA-67-3770      TCGA-67-3771 
"KCNS2 WILD-TYPE" "KCNS2 WILD-TYPE" "KCNS2 WILD-TYPE" "KCNS2 WILD-TYPE" 
     TCGA-67-3772      TCGA-67-3773      TCGA-67-3774      TCGA-67-6215 
"KCNS2 WILD-TYPE" "KCNS2 WILD-TYPE" "KCNS2 WILD-TYPE" "KCNS2 WILD-TYPE" 
     TCGA-67-6216      TCGA-67-6217      TCGA-71-6725      TCGA-73-4658 
"KCNS2 WILD-TYPE" "KCNS2 WILD-TYPE" "KCNS2 WILD-TYPE" "KCNS2 WILD-TYPE" 
     TCGA-73-4659      TCGA-73-4662      TCGA-73-4666      TCGA-73-4668 
"KCNS2 WILD-TYPE" "KCNS2 WILD-TYPE" "KCNS2 WILD-TYPE" "KCNS2 WILD-TYPE" 
     TCGA-73-4670      TCGA-73-4675      TCGA-73-4676      TCGA-73-4677 
"KCNS2 WILD-TYPE" "KCNS2 WILD-TYPE" "KCNS2 WILD-TYPE" "KCNS2 WILD-TYPE" 
     TCGA-91-6828      TCGA-91-6829      TCGA-91-6831      TCGA-91-6835 
"KCNS2 WILD-TYPE" "KCNS2 WILD-TYPE" "KCNS2 WILD-TYPE" "KCNS2 WILD-TYPE" 
     TCGA-91-6836 
"KCNS2 WILD-TYPE" 
     TCGA-05-4249      TCGA-05-4250      TCGA-05-4382      TCGA-05-4384 
"KCNS2 WILD-TYPE" "KCNS2 WILD-TYPE" "KCNS2 WILD-TYPE" "KCNS2 WILD-TYPE" 
     TCGA-05-4390      TCGA-05-4396      TCGA-05-4397      TCGA-05-4398 
"KCNS2 WILD-TYPE"   "KCNS2 MUTATED" "KCNS2 WILD-TYPE" "KCNS2 WILD-TYPE" 
     TCGA-05-4402      TCGA-05-4405      TCGA-05-4415      TCGA-05-4417 
"KCNS2 WILD-TYPE" "KCNS2 WILD-TYPE" "KCNS2 WILD-TYPE" "KCNS2 WILD-TYPE" 
     TCGA-05-4418      TCGA-05-4420      TCGA-05-4424      TCGA-05-4426 
"KCNS2 WILD-TYPE" "KCNS2 WILD-TYPE" "KCNS2 WILD-TYPE" "KCNS2 WILD-TYPE" 
     TCGA-05-4427      TCGA-05-4430      TCGA-05-4432      TCGA-05-4433 
"KCNS2 WILD-TYPE" "KCNS2 WILD-TYPE" "KCNS2 WILD-TYPE" "KCNS2 WILD-TYPE" 
     TCGA-05-4434      TCGA-05-5420      TCGA-05-5423      TCGA-05-5425 
"KCNS2 WILD-TYPE" "KCNS2 WILD-TYPE" "KCNS2 WILD-TYPE" "KCNS2 WILD-TYPE" 
     TCGA-05-5429      TCGA-05-5715      TCGA-35-3615      TCGA-35-4122 
"KCNS2 WILD-TYPE" "KCNS2 WILD-TYPE" "KCNS2 WILD-TYPE" "KCNS2 WILD-TYPE" 
     TCGA-35-4123      TCGA-35-5375      TCGA-38-4625      TCGA-38-4626 
"KCNS2 WILD-TYPE" "KCNS2 WILD-TYPE" "KCNS2 WILD-TYPE" "KCNS2 WILD-TYPE" 
     TCGA-38-4627      TCGA-38-4628      TCGA-38-4629      TCGA-38-4630 
"KCNS2 WILD-TYPE" "KCNS2 WILD-TYPE"   "KCNS2 MUTATED" "KCNS2 WILD-TYPE" 
     TCGA-38-4631      TCGA-38-4632      TCGA-38-6178      TCGA-44-2655 
"KCNS2 WILD-TYPE" "KCNS2 WILD-TYPE" "KCNS2 WILD-TYPE" "KCNS2 WILD-TYPE" 
     TCGA-44-2656      TCGA-44-2657      TCGA-44-2659      TCGA-44-2661 
"KCNS2 WILD-TYPE" "KCNS2 WILD-TYPE" "KCNS2 WILD-TYPE" "KCNS2 WILD-TYPE" 
     TCGA-44-2662      TCGA-44-2665      TCGA-44-2666      TCGA-44-2668 
"KCNS2 WILD-TYPE" "KCNS2 WILD-TYPE" "KCNS2 WILD-TYPE" "KCNS2 WILD-TYPE" 
     TCGA-44-3396      TCGA-44-3398      TCGA-44-3918      TCGA-44-3919 
"KCNS2 WILD-TYPE" "KCNS2 WILD-TYPE" "KCNS2 WILD-TYPE" "KCNS2 WILD-TYPE" 
     TCGA-44-4112      TCGA-44-5643      TCGA-44-5645      TCGA-44-6144 
"KCNS2 WILD-TYPE" "KCNS2 WILD-TYPE" "KCNS2 WILD-TYPE" "KCNS2 WILD-TYPE" 
     TCGA-44-6145      TCGA-44-6146      TCGA-44-6147      TCGA-44-6148 
"KCNS2 WILD-TYPE" "KCNS2 WILD-TYPE" "KCNS2 WILD-TYPE" "KCNS2 WILD-TYPE" 
     TCGA-44-6774      TCGA-44-6775      TCGA-44-6776      TCGA-44-6777 
"KCNS2 WILD-TYPE" "KCNS2 WILD-TYPE" "KCNS2 WILD-TYPE" "KCNS2 WILD-TYPE" 
     TCGA-44-6778      TCGA-44-6779      TCGA-49-4486      TCGA-49-4487 
"KCNS2 WILD-TYPE" "KCNS2 WILD-TYPE" "KCNS2 WILD-TYPE"   "KCNS2 MUTATED" 
     TCGA-49-4488      TCGA-49-4490      TCGA-49-4494      TCGA-49-4501 
"KCNS2 WILD-TYPE" "KCNS2 WILD-TYPE" "KCNS2 WILD-TYPE" "KCNS2 WILD-TYPE" 
     TCGA-49-4505      TCGA-49-4506      TCGA-49-4507      TCGA-49-4510 
"KCNS2 WILD-TYPE" "KCNS2 WILD-TYPE" "KCNS2 WILD-TYPE" "KCNS2 WILD-TYPE" 
     TCGA-49-4512      TCGA-49-4514      TCGA-49-6742      TCGA-49-6743 
"KCNS2 WILD-TYPE" "KCNS2 WILD-TYPE" "KCNS2 WILD-TYPE" "KCNS2 WILD-TYPE" 
     TCGA-49-6744      TCGA-49-6745      TCGA-50-5044      TCGA-50-5045 
"KCNS2 WILD-TYPE" "KCNS2 WILD-TYPE" "KCNS2 WILD-TYPE" "KCNS2 WILD-TYPE" 
     TCGA-50-5049      TCGA-50-5051      TCGA-50-5055      TCGA-50-5066 
"KCNS2 WILD-TYPE" "KCNS2 WILD-TYPE" "KCNS2 WILD-TYPE" "KCNS2 WILD-TYPE" 
     TCGA-50-5068      TCGA-50-5072      TCGA-50-5930      TCGA-50-5931 
"KCNS2 WILD-TYPE" "KCNS2 WILD-TYPE" "KCNS2 WILD-TYPE" "KCNS2 WILD-TYPE" 
     TCGA-50-5932      TCGA-50-5933      TCGA-50-5935      TCGA-50-5936 
"KCNS2 WILD-TYPE"   "KCNS2 MUTATED" "KCNS2 WILD-TYPE" "KCNS2 WILD-TYPE" 
     TCGA-50-5939      TCGA-50-5941      TCGA-50-5942      TCGA-50-5944 
"KCNS2 WILD-TYPE" "KCNS2 WILD-TYPE" "KCNS2 WILD-TYPE" "KCNS2 WILD-TYPE" 
     TCGA-50-5946      TCGA-50-6590      TCGA-50-6591      TCGA-50-6592 
"KCNS2 WILD-TYPE" "KCNS2 WILD-TYPE" "KCNS2 WILD-TYPE" "KCNS2 WILD-TYPE" 
     TCGA-50-6593      TCGA-50-6594      TCGA-50-6595      TCGA-50-6597 
"KCNS2 WILD-TYPE" "KCNS2 WILD-TYPE" "KCNS2 WILD-TYPE" "KCNS2 WILD-TYPE" 
     TCGA-55-1592      TCGA-55-1594      TCGA-55-1595      TCGA-55-1596 
"KCNS2 WILD-TYPE" "KCNS2 WILD-TYPE" "KCNS2 WILD-TYPE" "KCNS2 WILD-TYPE" 
     TCGA-55-5899      TCGA-55-6543      TCGA-55-6642      TCGA-55-6712 
"KCNS2 WILD-TYPE" "KCNS2 WILD-TYPE" "KCNS2 WILD-TYPE" "KCNS2 WILD-TYPE" 
     TCGA-64-1676      TCGA-64-1677      TCGA-64-1678      TCGA-64-1680 
"KCNS2 WILD-TYPE" "KCNS2 WILD-TYPE" "KCNS2 WILD-TYPE" "KCNS2 WILD-TYPE" 
     TCGA-64-5774      TCGA-64-5775      TCGA-64-5778      TCGA-64-5779 
"KCNS2 WILD-TYPE" "KCNS2 WILD-TYPE" "KCNS2 WILD-TYPE" "KCNS2 WILD-TYPE" 
     TCGA-64-5781      TCGA-64-5815      TCGA-67-3770      TCGA-67-3771 
"KCNS2 WILD-TYPE" "KCNS2 WILD-TYPE" "KCNS2 WILD-TYPE" "KCNS2 WILD-TYPE" 
     TCGA-67-3772      TCGA-67-3773      TCGA-67-3774      TCGA-67-6215 
"KCNS2 WILD-TYPE" "KCNS2 WILD-TYPE" "KCNS2 WILD-TYPE" "KCNS2 WILD-TYPE" 
     TCGA-67-6216      TCGA-67-6217      TCGA-71-6725      TCGA-73-4658 
"KCNS2 WILD-TYPE" "KCNS2 WILD-TYPE" "KCNS2 WILD-TYPE" "KCNS2 WILD-TYPE" 
     TCGA-73-4659      TCGA-73-4662      TCGA-73-4666      TCGA-73-4668 
"KCNS2 WILD-TYPE" "KCNS2 WILD-TYPE" "KCNS2 WILD-TYPE" "KCNS2 WILD-TYPE" 
     TCGA-73-4670      TCGA-73-4675      TCGA-73-4676      TCGA-73-4677 
"KCNS2 WILD-TYPE" "KCNS2 WILD-TYPE" "KCNS2 WILD-TYPE" "KCNS2 WILD-TYPE" 
     TCGA-91-6828      TCGA-91-6829      TCGA-91-6831      TCGA-91-6835 
"KCNS2 WILD-TYPE" "KCNS2 WILD-TYPE" "KCNS2 WILD-TYPE" "KCNS2 WILD-TYPE" 
     TCGA-91-6836 
"KCNS2 WILD-TYPE" 
     TCGA-05-4249      TCGA-05-4250      TCGA-05-4382      TCGA-05-4384 
"KCNS2 WILD-TYPE" "KCNS2 WILD-TYPE" "KCNS2 WILD-TYPE" "KCNS2 WILD-TYPE" 
     TCGA-05-4390      TCGA-05-4396      TCGA-05-4397      TCGA-05-4398 
"KCNS2 WILD-TYPE"   "KCNS2 MUTATED" "KCNS2 WILD-TYPE" "KCNS2 WILD-TYPE" 
     TCGA-05-4402      TCGA-05-4405      TCGA-05-4415      TCGA-05-4417 
"KCNS2 WILD-TYPE" "KCNS2 WILD-TYPE" "KCNS2 WILD-TYPE" "KCNS2 WILD-TYPE" 
     TCGA-05-4418      TCGA-05-4420      TCGA-05-4424      TCGA-05-4426 
"KCNS2 WILD-TYPE" "KCNS2 WILD-TYPE" "KCNS2 WILD-TYPE" "KCNS2 WILD-TYPE" 
     TCGA-05-4427      TCGA-05-4430      TCGA-05-4432      TCGA-05-4433 
"KCNS2 WILD-TYPE" "KCNS2 WILD-TYPE" "KCNS2 WILD-TYPE" "KCNS2 WILD-TYPE" 
     TCGA-05-4434      TCGA-05-5420      TCGA-05-5423      TCGA-05-5425 
"KCNS2 WILD-TYPE" "KCNS2 WILD-TYPE" "KCNS2 WILD-TYPE" "KCNS2 WILD-TYPE" 
     TCGA-05-5429      TCGA-05-5715      TCGA-35-3615      TCGA-35-4122 
"KCNS2 WILD-TYPE" "KCNS2 WILD-TYPE" "KCNS2 WILD-TYPE" "KCNS2 WILD-TYPE" 
     TCGA-35-4123      TCGA-35-5375      TCGA-38-4625      TCGA-38-4626 
"KCNS2 WILD-TYPE" "KCNS2 WILD-TYPE" "KCNS2 WILD-TYPE" "KCNS2 WILD-TYPE" 
     TCGA-38-4627      TCGA-38-4628      TCGA-38-4629      TCGA-38-4630 
"KCNS2 WILD-TYPE" "KCNS2 WILD-TYPE"   "KCNS2 MUTATED" "KCNS2 WILD-TYPE" 
     TCGA-38-4631      TCGA-38-4632      TCGA-38-6178      TCGA-44-2655 
"KCNS2 WILD-TYPE" "KCNS2 WILD-TYPE" "KCNS2 WILD-TYPE" "KCNS2 WILD-TYPE" 
     TCGA-44-2656      TCGA-44-2657      TCGA-44-2659      TCGA-44-2661 
"KCNS2 WILD-TYPE" "KCNS2 WILD-TYPE" "KCNS2 WILD-TYPE" "KCNS2 WILD-TYPE" 
     TCGA-44-2662      TCGA-44-2665      TCGA-44-2666      TCGA-44-2668 
"KCNS2 WILD-TYPE" "KCNS2 WILD-TYPE" "KCNS2 WILD-TYPE" "KCNS2 WILD-TYPE" 
     TCGA-44-3396      TCGA-44-3398      TCGA-44-3918      TCGA-44-3919 
"KCNS2 WILD-TYPE" "KCNS2 WILD-TYPE" "KCNS2 WILD-TYPE" "KCNS2 WILD-TYPE" 
     TCGA-44-4112      TCGA-44-5643      TCGA-44-5645      TCGA-44-6144 
"KCNS2 WILD-TYPE" "KCNS2 WILD-TYPE" "KCNS2 WILD-TYPE" "KCNS2 WILD-TYPE" 
     TCGA-44-6145      TCGA-44-6146      TCGA-44-6147      TCGA-44-6148 
"KCNS2 WILD-TYPE" "KCNS2 WILD-TYPE" "KCNS2 WILD-TYPE" "KCNS2 WILD-TYPE" 
     TCGA-44-6774      TCGA-44-6775      TCGA-44-6776      TCGA-44-6777 
"KCNS2 WILD-TYPE" "KCNS2 WILD-TYPE" "KCNS2 WILD-TYPE" "KCNS2 WILD-TYPE" 
     TCGA-44-6778      TCGA-44-6779      TCGA-49-4486      TCGA-49-4487 
"KCNS2 WILD-TYPE" "KCNS2 WILD-TYPE" "KCNS2 WILD-TYPE"   "KCNS2 MUTATED" 
     TCGA-49-4488      TCGA-49-4490      TCGA-49-4494      TCGA-49-4501 
"KCNS2 WILD-TYPE" "KCNS2 WILD-TYPE" "KCNS2 WILD-TYPE" "KCNS2 WILD-TYPE" 
     TCGA-49-4505      TCGA-49-4506      TCGA-49-4507      TCGA-49-4510 
"KCNS2 WILD-TYPE" "KCNS2 WILD-TYPE" "KCNS2 WILD-TYPE" "KCNS2 WILD-TYPE" 
     TCGA-49-4512      TCGA-49-4514      TCGA-49-6742      TCGA-49-6743 
"KCNS2 WILD-TYPE" "KCNS2 WILD-TYPE" "KCNS2 WILD-TYPE" "KCNS2 WILD-TYPE" 
     TCGA-49-6744      TCGA-49-6745      TCGA-50-5044      TCGA-50-5045 
"KCNS2 WILD-TYPE" "KCNS2 WILD-TYPE" "KCNS2 WILD-TYPE" "KCNS2 WILD-TYPE" 
     TCGA-50-5049      TCGA-50-5051      TCGA-50-5055      TCGA-50-5066 
"KCNS2 WILD-TYPE" "KCNS2 WILD-TYPE" "KCNS2 WILD-TYPE" "KCNS2 WILD-TYPE" 
     TCGA-50-5068      TCGA-50-5072      TCGA-50-5930      TCGA-50-5931 
"KCNS2 WILD-TYPE" "KCNS2 WILD-TYPE" "KCNS2 WILD-TYPE" "KCNS2 WILD-TYPE" 
     TCGA-50-5932      TCGA-50-5933      TCGA-50-5935      TCGA-50-5936 
"KCNS2 WILD-TYPE"   "KCNS2 MUTATED" "KCNS2 WILD-TYPE" "KCNS2 WILD-TYPE" 
     TCGA-50-5939      TCGA-50-5941      TCGA-50-5942      TCGA-50-5944 
"KCNS2 WILD-TYPE" "KCNS2 WILD-TYPE" "KCNS2 WILD-TYPE" "KCNS2 WILD-TYPE" 
     TCGA-50-5946      TCGA-50-6590      TCGA-50-6591      TCGA-50-6592 
"KCNS2 WILD-TYPE" "KCNS2 WILD-TYPE" "KCNS2 WILD-TYPE" "KCNS2 WILD-TYPE" 
     TCGA-50-6593      TCGA-50-6594      TCGA-50-6595      TCGA-50-6597 
"KCNS2 WILD-TYPE" "KCNS2 WILD-TYPE" "KCNS2 WILD-TYPE" "KCNS2 WILD-TYPE" 
     TCGA-55-1592      TCGA-55-1594      TCGA-55-1595      TCGA-55-1596 
"KCNS2 WILD-TYPE" "KCNS2 WILD-TYPE" "KCNS2 WILD-TYPE" "KCNS2 WILD-TYPE" 
     TCGA-55-5899      TCGA-55-6543      TCGA-55-6642      TCGA-55-6712 
"KCNS2 WILD-TYPE" "KCNS2 WILD-TYPE" "KCNS2 WILD-TYPE" "KCNS2 WILD-TYPE" 
     TCGA-64-1676      TCGA-64-1677      TCGA-64-1678      TCGA-64-1680 
"KCNS2 WILD-TYPE" "KCNS2 WILD-TYPE" "KCNS2 WILD-TYPE" "KCNS2 WILD-TYPE" 
     TCGA-64-5774      TCGA-64-5775      TCGA-64-5778      TCGA-64-5779 
"KCNS2 WILD-TYPE" "KCNS2 WILD-TYPE" "KCNS2 WILD-TYPE" "KCNS2 WILD-TYPE" 
     TCGA-64-5781      TCGA-64-5815      TCGA-67-3770      TCGA-67-3771 
"KCNS2 WILD-TYPE" "KCNS2 WILD-TYPE" "KCNS2 WILD-TYPE" "KCNS2 WILD-TYPE" 
     TCGA-67-3772      TCGA-67-3773      TCGA-67-3774      TCGA-67-6215 
"KCNS2 WILD-TYPE" "KCNS2 WILD-TYPE" "KCNS2 WILD-TYPE" "KCNS2 WILD-TYPE" 
     TCGA-67-6216      TCGA-67-6217      TCGA-71-6725      TCGA-73-4658 
"KCNS2 WILD-TYPE" "KCNS2 WILD-TYPE" "KCNS2 WILD-TYPE" "KCNS2 WILD-TYPE" 
     TCGA-73-4659      TCGA-73-4662      TCGA-73-4666      TCGA-73-4668 
"KCNS2 WILD-TYPE" "KCNS2 WILD-TYPE" "KCNS2 WILD-TYPE" "KCNS2 WILD-TYPE" 
     TCGA-73-4670      TCGA-73-4675      TCGA-73-4676      TCGA-73-4677 
"KCNS2 WILD-TYPE" "KCNS2 WILD-TYPE" "KCNS2 WILD-TYPE" "KCNS2 WILD-TYPE" 
     TCGA-91-6828      TCGA-91-6829      TCGA-91-6831      TCGA-91-6835 
"KCNS2 WILD-TYPE" "KCNS2 WILD-TYPE" "KCNS2 WILD-TYPE" "KCNS2 WILD-TYPE" 
     TCGA-91-6836 
"KCNS2 WILD-TYPE" 
[1] "hr=" "1.4"
D186V2, continuous
D186V3, binary
[1] "tbl2"
                 cls
clus              [,1] [,2]
  KCNS2 MUTATED      2    5
  KCNS2 WILD-TYPE   91   74
        clus
vv       KCNS2 MUTATED KCNS2 WILD-TYPE
  FEMALE             2              91
  MALE               5              74
D186V4, continuous
D186V5, multiclass
D186V6, multiclass
    clus
vv   KCNS2 MUTATED KCNS2 WILD-TYPE
  T1             2              39
  T2             1             107
  T3             2              12
  T4             2               6
D186V7, multiclass
       clus
vv      KCNS2 MUTATED KCNS2 WILD-TYPE
  N0                3              92
  N1                1              36
  N2+N3             3              32
D186V8, multiclass
    clus
vv   KCNS2 MUTATED KCNS2 WILD-TYPE
  M0             6             131
  M1             1               8
  MX             0              22
D186V9, multiclass
     clus
vv    KCNS2 MUTATED KCNS2 WILD-TYPE
  I               2              86
  II              1              32
  III             3              36
  IV              1               8
D186V10, binary
[1] "tbl2"
                 cls
clus              [,1] [,2]
  KCNS2 MUTATED      1    6
  KCNS2 WILD-TYPE   15  150
     clus
vv    KCNS2 MUTATED KCNS2 WILD-TYPE
  NO              1              15
  YES             6             150
D186V11, continuous
D186V12, continuous
D186V13, multiclass
                                             clus
vv                                            KCNS2 MUTATED KCNS2 WILD-TYPE
  CURRENT REFORMED SMOKER FOR < OR = 15 YEARS             4              58
  CURRENT REFORMED SMOKER FOR > 15 YEARS                  2              44
  CURRENT SMOKER                                          0              28
  LIFELONG NON-SMOKER                                     0              24
D186V14, continuous
[1] "Remove cluster labels:" "KCNS2 MUTATED"         
clus
  KCNS2 MUTATED KCNS2 WILD-TYPE 
              1              67 
     TCGA-05-4384      TCGA-05-4390      TCGA-05-4405      TCGA-05-4410 
"KCNS2 WILD-TYPE" "KCNS2 WILD-TYPE" "KCNS2 WILD-TYPE" "KCNS2 WILD-TYPE" 
     TCGA-05-4415      TCGA-05-4417      TCGA-05-4424      TCGA-05-4427 
"KCNS2 WILD-TYPE" "KCNS2 WILD-TYPE" "KCNS2 WILD-TYPE" "KCNS2 WILD-TYPE" 
     TCGA-05-4433      TCGA-05-5420      TCGA-05-5423      TCGA-05-5425 
"KCNS2 WILD-TYPE" "KCNS2 WILD-TYPE" "KCNS2 WILD-TYPE" "KCNS2 WILD-TYPE" 
     TCGA-05-5428      TCGA-35-4122      TCGA-35-4123      TCGA-35-5375 
"KCNS2 WILD-TYPE" "KCNS2 WILD-TYPE" "KCNS2 WILD-TYPE" "KCNS2 WILD-TYPE" 
     TCGA-38-4625      TCGA-38-4626      TCGA-44-2655      TCGA-44-2656 
"KCNS2 WILD-TYPE" "KCNS2 WILD-TYPE" "KCNS2 WILD-TYPE" "KCNS2 WILD-TYPE" 
     TCGA-44-2657      TCGA-44-2659      TCGA-44-2662      TCGA-44-2666 
"KCNS2 WILD-TYPE" "KCNS2 WILD-TYPE" "KCNS2 WILD-TYPE" "KCNS2 WILD-TYPE" 
     TCGA-44-2668      TCGA-44-3396      TCGA-44-3398      TCGA-44-3918 
"KCNS2 WILD-TYPE" "KCNS2 WILD-TYPE" "KCNS2 WILD-TYPE" "KCNS2 WILD-TYPE" 
     TCGA-44-4112      TCGA-44-5645      TCGA-44-6144      TCGA-44-6145 
"KCNS2 WILD-TYPE" "KCNS2 WILD-TYPE" "KCNS2 WILD-TYPE" "KCNS2 WILD-TYPE" 
     TCGA-44-6147      TCGA-44-6148      TCGA-44-6774      TCGA-44-6775 
"KCNS2 WILD-TYPE" "KCNS2 WILD-TYPE" "KCNS2 WILD-TYPE" "KCNS2 WILD-TYPE" 
     TCGA-44-6776      TCGA-44-6777      TCGA-44-6778      TCGA-44-6779 
"KCNS2 WILD-TYPE" "KCNS2 WILD-TYPE" "KCNS2 WILD-TYPE" "KCNS2 WILD-TYPE" 
     TCGA-49-4486      TCGA-49-4494      TCGA-49-4505      TCGA-55-1592 
"KCNS2 WILD-TYPE" "KCNS2 WILD-TYPE" "KCNS2 WILD-TYPE" "KCNS2 WILD-TYPE" 
     TCGA-55-1594      TCGA-55-1595      TCGA-55-1596      TCGA-55-5899 
"KCNS2 WILD-TYPE" "KCNS2 WILD-TYPE" "KCNS2 WILD-TYPE" "KCNS2 WILD-TYPE" 
     TCGA-55-6642      TCGA-55-6712      TCGA-64-1677      TCGA-64-1678 
"KCNS2 WILD-TYPE" "KCNS2 WILD-TYPE" "KCNS2 WILD-TYPE" "KCNS2 WILD-TYPE" 
     TCGA-64-1680      TCGA-64-5774      TCGA-64-5775      TCGA-64-5778 
"KCNS2 WILD-TYPE" "KCNS2 WILD-TYPE" "KCNS2 WILD-TYPE" "KCNS2 WILD-TYPE" 
     TCGA-64-5779      TCGA-64-5781      TCGA-73-4659      TCGA-73-4662 
"KCNS2 WILD-TYPE" "KCNS2 WILD-TYPE" "KCNS2 WILD-TYPE" "KCNS2 WILD-TYPE" 
     TCGA-73-4666      TCGA-73-4668      TCGA-73-4670      TCGA-73-4675 
"KCNS2 WILD-TYPE" "KCNS2 WILD-TYPE" "KCNS2 WILD-TYPE" "KCNS2 WILD-TYPE" 
     TCGA-73-4676      TCGA-91-6829      TCGA-91-6836 
"KCNS2 WILD-TYPE" "KCNS2 WILD-TYPE" "KCNS2 WILD-TYPE" 

Clustering(187) Variable = KRTAP8-1 MUTATION ANALYSIS
D187V1, survival
                    sevent
clus2                 0  1
  KRTAP8-1 MUTATED    2  1
  KRTAP8-1 WILD-TYPE 97 49
  KRTAP8-1 MUTATED KRTAP8-1 WILD-TYPE 
                 3                146 
  KRTAP8-1 MUTATED KRTAP8-1 WILD-TYPE 
                 1                 49 
$`KRTAP8-1 MUTATED`
TCGA-44-2668 TCGA-44-6145 TCGA-49-4487 
        8.09         3.35        28.11 

$`KRTAP8-1 WILD-TYPE`
TCGA-05-4249 TCGA-05-4250 TCGA-05-4382 TCGA-05-4384 TCGA-05-4390 TCGA-05-4396 
       38.07         3.98        19.92        14.01        37.02         9.96 
TCGA-05-4397 TCGA-05-4398 TCGA-05-4402 TCGA-05-4405 TCGA-05-4415 TCGA-05-4417 
       24.03        47.05         8.02        20.05         2.96        14.93 
TCGA-05-4418 TCGA-05-4420 TCGA-05-4424 TCGA-05-4426 TCGA-05-4427 TCGA-05-4430 
        8.98        29.95        30.02        26.01        26.01        25.02 
TCGA-05-4432 TCGA-05-4433 TCGA-05-4434 TCGA-05-5420 TCGA-05-5423 TCGA-05-5425 
       25.02        24.00        15.02         1.02         4.96         2.96 
TCGA-05-5429 TCGA-05-5715 TCGA-35-3615 TCGA-35-4122 TCGA-35-4123 TCGA-35-5375 
        0.99         2.04         0.46         7.36         5.95         8.68 
TCGA-38-4625 TCGA-38-4626 TCGA-38-4627 TCGA-38-4628 TCGA-38-4629 TCGA-38-4630 
       47.61        85.32        37.71        49.02        28.37        35.28 
TCGA-38-4631 TCGA-38-4632 TCGA-38-6178 TCGA-44-2655 TCGA-44-2656 TCGA-44-2657 
       11.64        44.61         5.19        18.87        19.10        13.15 
TCGA-44-2659 TCGA-44-2661 TCGA-44-2662 TCGA-44-2665 TCGA-44-2666 TCGA-44-3396 
       17.39         3.39        15.78        13.15         3.19        10.22 
TCGA-44-3398 TCGA-44-3918 TCGA-44-3919 TCGA-44-4112 TCGA-44-5643 TCGA-44-5645 
        8.32         6.44         6.21         4.60         3.48         6.84 
TCGA-44-6144 TCGA-44-6146 TCGA-44-6147 TCGA-44-6148 TCGA-44-6774 TCGA-44-6775 
        0.30         9.93         7.76         3.12         5.42         2.70 
TCGA-44-6776 TCGA-44-6777 TCGA-44-6778 TCGA-44-6779 TCGA-49-4486 TCGA-49-4488 
       63.72        32.45        36.49        16.41        76.21        28.57 
TCGA-49-4490 TCGA-49-4494 TCGA-49-4501 TCGA-49-4505 TCGA-49-4506 TCGA-49-4507 
       12.66        35.54        46.72        14.07        32.84         8.81 
TCGA-49-4510 TCGA-49-4512 TCGA-49-4514 TCGA-49-6742 TCGA-49-6743 TCGA-49-6744 
       29.46        29.75        43.20        15.02        12.13        12.99 
TCGA-49-6745 TCGA-50-5044 TCGA-50-5045 TCGA-50-5049 TCGA-50-5051 TCGA-50-5055 
        4.93        20.48        71.47        48.82        14.96        25.81 
TCGA-50-5066 TCGA-50-5068 TCGA-50-5072 TCGA-50-5930 TCGA-50-5931 TCGA-50-5932 
        9.76        49.28         8.05         9.27         8.78        35.87 
TCGA-50-5933 TCGA-50-5935 TCGA-50-5936 TCGA-50-5939 TCGA-50-5941 TCGA-50-5942 
       77.88        21.47         8.45        15.12         9.37         4.44 
TCGA-50-5944 TCGA-50-5946 TCGA-50-6590 TCGA-50-6591 TCGA-50-6592 TCGA-50-6593 
       12.26        11.47        42.31         3.88        25.51        11.05 
TCGA-50-6594 TCGA-50-6595 TCGA-50-6597 TCGA-55-1592 TCGA-55-1594 TCGA-55-1595 
       12.16         6.21        33.37        23.05        38.73        48.62 
TCGA-55-1596 TCGA-55-5899 TCGA-55-6543 TCGA-55-6642 TCGA-55-6712 TCGA-64-1676 
       45.17         2.86         0.07        32.61         0.79        56.81 
TCGA-64-1677 TCGA-64-1678 TCGA-64-1680 TCGA-64-5774 TCGA-64-5775 TCGA-64-5778 
       20.65        39.09        37.02        83.84         0.10        30.44 
TCGA-64-5779 TCGA-64-5781 TCGA-64-5815 TCGA-67-3770 TCGA-67-3771 TCGA-67-3772 
       16.67        39.52         7.33         0.99         1.97         0.59 
TCGA-67-3773 TCGA-67-3774 TCGA-67-6215 TCGA-67-6216 TCGA-67-6217 TCGA-71-6725 
        2.04         0.59         0.89         0.69        13.87         2.01 
TCGA-73-4658 TCGA-73-4659 TCGA-73-4662 TCGA-73-4666 TCGA-73-4668 TCGA-73-4670 
       52.57        23.38        29.95        20.28        15.35         0.46 
TCGA-73-4675 TCGA-73-4676 TCGA-73-4677 TCGA-91-6828 TCGA-91-6829 TCGA-91-6831 
        1.32         4.01         1.25         1.22        41.33         1.28 
TCGA-91-6835 TCGA-91-6836 
        1.15         0.36 

  KRTAP8-1 MUTATED KRTAP8-1 WILD-TYPE 
              3.35               0.07 
  KRTAP8-1 MUTATED KRTAP8-1 WILD-TYPE 
             28.11              85.32 
  KRTAP8-1 MUTATED KRTAP8-1 WILD-TYPE 
              8.09              13.94 
[1] "3.4 - 28.1 (8.1)"  "0.1 - 85.3 (13.9)"
        TCGA-05-4249         TCGA-05-4250         TCGA-05-4382 
"KRTAP8-1 WILD-TYPE" "KRTAP8-1 WILD-TYPE" "KRTAP8-1 WILD-TYPE" 
        TCGA-05-4384         TCGA-05-4390         TCGA-05-4396 
"KRTAP8-1 WILD-TYPE" "KRTAP8-1 WILD-TYPE" "KRTAP8-1 WILD-TYPE" 
        TCGA-05-4397         TCGA-05-4398         TCGA-05-4402 
"KRTAP8-1 WILD-TYPE" "KRTAP8-1 WILD-TYPE" "KRTAP8-1 WILD-TYPE" 
        TCGA-05-4405         TCGA-05-4415         TCGA-05-4417 
"KRTAP8-1 WILD-TYPE" "KRTAP8-1 WILD-TYPE" "KRTAP8-1 WILD-TYPE" 
        TCGA-05-4418         TCGA-05-4420         TCGA-05-4424 
"KRTAP8-1 WILD-TYPE" "KRTAP8-1 WILD-TYPE" "KRTAP8-1 WILD-TYPE" 
        TCGA-05-4426         TCGA-05-4427         TCGA-05-4430 
"KRTAP8-1 WILD-TYPE" "KRTAP8-1 WILD-TYPE" "KRTAP8-1 WILD-TYPE" 
        TCGA-05-4432         TCGA-05-4433         TCGA-05-4434 
"KRTAP8-1 WILD-TYPE" "KRTAP8-1 WILD-TYPE" "KRTAP8-1 WILD-TYPE" 
        TCGA-05-5420         TCGA-05-5423         TCGA-05-5425 
"KRTAP8-1 WILD-TYPE" "KRTAP8-1 WILD-TYPE" "KRTAP8-1 WILD-TYPE" 
        TCGA-05-5429         TCGA-05-5715         TCGA-35-3615 
"KRTAP8-1 WILD-TYPE" "KRTAP8-1 WILD-TYPE" "KRTAP8-1 WILD-TYPE" 
        TCGA-35-4122         TCGA-35-4123         TCGA-35-5375 
"KRTAP8-1 WILD-TYPE" "KRTAP8-1 WILD-TYPE" "KRTAP8-1 WILD-TYPE" 
        TCGA-38-4625         TCGA-38-4626         TCGA-38-4627 
"KRTAP8-1 WILD-TYPE" "KRTAP8-1 WILD-TYPE" "KRTAP8-1 WILD-TYPE" 
        TCGA-38-4628         TCGA-38-4629         TCGA-38-4630 
"KRTAP8-1 WILD-TYPE" "KRTAP8-1 WILD-TYPE" "KRTAP8-1 WILD-TYPE" 
        TCGA-38-4631         TCGA-38-4632         TCGA-38-6178 
"KRTAP8-1 WILD-TYPE" "KRTAP8-1 WILD-TYPE" "KRTAP8-1 WILD-TYPE" 
        TCGA-44-2655         TCGA-44-2656         TCGA-44-2657 
"KRTAP8-1 WILD-TYPE" "KRTAP8-1 WILD-TYPE" "KRTAP8-1 WILD-TYPE" 
        TCGA-44-2659         TCGA-44-2661         TCGA-44-2662 
"KRTAP8-1 WILD-TYPE" "KRTAP8-1 WILD-TYPE" "KRTAP8-1 WILD-TYPE" 
        TCGA-44-2665         TCGA-44-2666         TCGA-44-2668 
"KRTAP8-1 WILD-TYPE" "KRTAP8-1 WILD-TYPE"   "KRTAP8-1 MUTATED" 
        TCGA-44-3396         TCGA-44-3398         TCGA-44-3918 
"KRTAP8-1 WILD-TYPE" "KRTAP8-1 WILD-TYPE" "KRTAP8-1 WILD-TYPE" 
        TCGA-44-3919         TCGA-44-4112         TCGA-44-5643 
"KRTAP8-1 WILD-TYPE" "KRTAP8-1 WILD-TYPE" "KRTAP8-1 WILD-TYPE" 
        TCGA-44-5645         TCGA-44-6144         TCGA-44-6145 
"KRTAP8-1 WILD-TYPE" "KRTAP8-1 WILD-TYPE"   "KRTAP8-1 MUTATED" 
        TCGA-44-6146         TCGA-44-6147         TCGA-44-6148 
"KRTAP8-1 WILD-TYPE" "KRTAP8-1 WILD-TYPE" "KRTAP8-1 WILD-TYPE" 
        TCGA-44-6774         TCGA-44-6775         TCGA-44-6776 
"KRTAP8-1 WILD-TYPE" "KRTAP8-1 WILD-TYPE" "KRTAP8-1 WILD-TYPE" 
        TCGA-44-6777         TCGA-44-6778         TCGA-44-6779 
"KRTAP8-1 WILD-TYPE" "KRTAP8-1 WILD-TYPE" "KRTAP8-1 WILD-TYPE" 
        TCGA-49-4486         TCGA-49-4487         TCGA-49-4488 
"KRTAP8-1 WILD-TYPE"   "KRTAP8-1 MUTATED" "KRTAP8-1 WILD-TYPE" 
        TCGA-49-4490         TCGA-49-4494         TCGA-49-4501 
"KRTAP8-1 WILD-TYPE" "KRTAP8-1 WILD-TYPE" "KRTAP8-1 WILD-TYPE" 
        TCGA-49-4505         TCGA-49-4506         TCGA-49-4507 
"KRTAP8-1 WILD-TYPE" "KRTAP8-1 WILD-TYPE" "KRTAP8-1 WILD-TYPE" 
        TCGA-49-4510         TCGA-49-4512         TCGA-49-4514 
"KRTAP8-1 WILD-TYPE" "KRTAP8-1 WILD-TYPE" "KRTAP8-1 WILD-TYPE" 
        TCGA-49-6742         TCGA-49-6743         TCGA-49-6744 
"KRTAP8-1 WILD-TYPE" "KRTAP8-1 WILD-TYPE" "KRTAP8-1 WILD-TYPE" 
        TCGA-49-6745         TCGA-50-5044         TCGA-50-5045 
"KRTAP8-1 WILD-TYPE" "KRTAP8-1 WILD-TYPE" "KRTAP8-1 WILD-TYPE" 
        TCGA-50-5049         TCGA-50-5051         TCGA-50-5055 
"KRTAP8-1 WILD-TYPE" "KRTAP8-1 WILD-TYPE" "KRTAP8-1 WILD-TYPE" 
        TCGA-50-5066         TCGA-50-5068         TCGA-50-5072 
"KRTAP8-1 WILD-TYPE" "KRTAP8-1 WILD-TYPE" "KRTAP8-1 WILD-TYPE" 
        TCGA-50-5930         TCGA-50-5931         TCGA-50-5932 
"KRTAP8-1 WILD-TYPE" "KRTAP8-1 WILD-TYPE" "KRTAP8-1 WILD-TYPE" 
        TCGA-50-5933         TCGA-50-5935         TCGA-50-5936 
"KRTAP8-1 WILD-TYPE" "KRTAP8-1 WILD-TYPE" "KRTAP8-1 WILD-TYPE" 
        TCGA-50-5939         TCGA-50-5941         TCGA-50-5942 
"KRTAP8-1 WILD-TYPE" "KRTAP8-1 WILD-TYPE" "KRTAP8-1 WILD-TYPE" 
        TCGA-50-5944         TCGA-50-5946         TCGA-50-6590 
"KRTAP8-1 WILD-TYPE" "KRTAP8-1 WILD-TYPE" "KRTAP8-1 WILD-TYPE" 
        TCGA-50-6591         TCGA-50-6592         TCGA-50-6593 
"KRTAP8-1 WILD-TYPE" "KRTAP8-1 WILD-TYPE" "KRTAP8-1 WILD-TYPE" 
        TCGA-50-6594         TCGA-50-6595         TCGA-50-6597 
"KRTAP8-1 WILD-TYPE" "KRTAP8-1 WILD-TYPE" "KRTAP8-1 WILD-TYPE" 
        TCGA-55-1592         TCGA-55-1594         TCGA-55-1595 
"KRTAP8-1 WILD-TYPE" "KRTAP8-1 WILD-TYPE" "KRTAP8-1 WILD-TYPE" 
        TCGA-55-1596         TCGA-55-5899         TCGA-55-6543 
"KRTAP8-1 WILD-TYPE" "KRTAP8-1 WILD-TYPE" "KRTAP8-1 WILD-TYPE" 
        TCGA-55-6642         TCGA-55-6712         TCGA-64-1676 
"KRTAP8-1 WILD-TYPE" "KRTAP8-1 WILD-TYPE" "KRTAP8-1 WILD-TYPE" 
        TCGA-64-1677         TCGA-64-1678         TCGA-64-1680 
"KRTAP8-1 WILD-TYPE" "KRTAP8-1 WILD-TYPE" "KRTAP8-1 WILD-TYPE" 
        TCGA-64-5774         TCGA-64-5775         TCGA-64-5778 
"KRTAP8-1 WILD-TYPE" "KRTAP8-1 WILD-TYPE" "KRTAP8-1 WILD-TYPE" 
        TCGA-64-5779         TCGA-64-5781         TCGA-64-5815 
"KRTAP8-1 WILD-TYPE" "KRTAP8-1 WILD-TYPE" "KRTAP8-1 WILD-TYPE" 
        TCGA-67-3770         TCGA-67-3771         TCGA-67-3772 
"KRTAP8-1 WILD-TYPE" "KRTAP8-1 WILD-TYPE" "KRTAP8-1 WILD-TYPE" 
        TCGA-67-3773         TCGA-67-3774         TCGA-67-6215 
"KRTAP8-1 WILD-TYPE" "KRTAP8-1 WILD-TYPE" "KRTAP8-1 WILD-TYPE" 
        TCGA-67-6216         TCGA-67-6217         TCGA-71-6725 
"KRTAP8-1 WILD-TYPE" "KRTAP8-1 WILD-TYPE" "KRTAP8-1 WILD-TYPE" 
        TCGA-73-4658         TCGA-73-4659         TCGA-73-4662 
"KRTAP8-1 WILD-TYPE" "KRTAP8-1 WILD-TYPE" "KRTAP8-1 WILD-TYPE" 
        TCGA-73-4666         TCGA-73-4668         TCGA-73-4670 
"KRTAP8-1 WILD-TYPE" "KRTAP8-1 WILD-TYPE" "KRTAP8-1 WILD-TYPE" 
        TCGA-73-4675         TCGA-73-4676         TCGA-73-4677 
"KRTAP8-1 WILD-TYPE" "KRTAP8-1 WILD-TYPE" "KRTAP8-1 WILD-TYPE" 
        TCGA-91-6828         TCGA-91-6829         TCGA-91-6831 
"KRTAP8-1 WILD-TYPE" "KRTAP8-1 WILD-TYPE" "KRTAP8-1 WILD-TYPE" 
        TCGA-91-6835         TCGA-91-6836 
"KRTAP8-1 WILD-TYPE" "KRTAP8-1 WILD-TYPE" 
        TCGA-05-4249         TCGA-05-4250         TCGA-05-4382 
"KRTAP8-1 WILD-TYPE" "KRTAP8-1 WILD-TYPE" "KRTAP8-1 WILD-TYPE" 
        TCGA-05-4384         TCGA-05-4390         TCGA-05-4396 
"KRTAP8-1 WILD-TYPE" "KRTAP8-1 WILD-TYPE" "KRTAP8-1 WILD-TYPE" 
        TCGA-05-4397         TCGA-05-4398         TCGA-05-4402 
"KRTAP8-1 WILD-TYPE" "KRTAP8-1 WILD-TYPE" "KRTAP8-1 WILD-TYPE" 
        TCGA-05-4405         TCGA-05-4415         TCGA-05-4417 
"KRTAP8-1 WILD-TYPE" "KRTAP8-1 WILD-TYPE" "KRTAP8-1 WILD-TYPE" 
        TCGA-05-4418         TCGA-05-4420         TCGA-05-4424 
"KRTAP8-1 WILD-TYPE" "KRTAP8-1 WILD-TYPE" "KRTAP8-1 WILD-TYPE" 
        TCGA-05-4426         TCGA-05-4427         TCGA-05-4430 
"KRTAP8-1 WILD-TYPE" "KRTAP8-1 WILD-TYPE" "KRTAP8-1 WILD-TYPE" 
        TCGA-05-4432         TCGA-05-4433         TCGA-05-4434 
"KRTAP8-1 WILD-TYPE" "KRTAP8-1 WILD-TYPE" "KRTAP8-1 WILD-TYPE" 
        TCGA-05-5420         TCGA-05-5423         TCGA-05-5425 
"KRTAP8-1 WILD-TYPE" "KRTAP8-1 WILD-TYPE" "KRTAP8-1 WILD-TYPE" 
        TCGA-05-5429         TCGA-05-5715         TCGA-35-3615 
"KRTAP8-1 WILD-TYPE" "KRTAP8-1 WILD-TYPE" "KRTAP8-1 WILD-TYPE" 
        TCGA-35-4122         TCGA-35-4123         TCGA-35-5375 
"KRTAP8-1 WILD-TYPE" "KRTAP8-1 WILD-TYPE" "KRTAP8-1 WILD-TYPE" 
        TCGA-38-4625         TCGA-38-4626         TCGA-38-4627 
"KRTAP8-1 WILD-TYPE" "KRTAP8-1 WILD-TYPE" "KRTAP8-1 WILD-TYPE" 
        TCGA-38-4628         TCGA-38-4629         TCGA-38-4630 
"KRTAP8-1 WILD-TYPE" "KRTAP8-1 WILD-TYPE" "KRTAP8-1 WILD-TYPE" 
        TCGA-38-4631         TCGA-38-4632         TCGA-38-6178 
"KRTAP8-1 WILD-TYPE" "KRTAP8-1 WILD-TYPE" "KRTAP8-1 WILD-TYPE" 
        TCGA-44-2655         TCGA-44-2656         TCGA-44-2657 
"KRTAP8-1 WILD-TYPE" "KRTAP8-1 WILD-TYPE" "KRTAP8-1 WILD-TYPE" 
        TCGA-44-2659         TCGA-44-2661         TCGA-44-2662 
"KRTAP8-1 WILD-TYPE" "KRTAP8-1 WILD-TYPE" "KRTAP8-1 WILD-TYPE" 
        TCGA-44-2665         TCGA-44-2666         TCGA-44-2668 
"KRTAP8-1 WILD-TYPE" "KRTAP8-1 WILD-TYPE"   "KRTAP8-1 MUTATED" 
        TCGA-44-3396         TCGA-44-3398         TCGA-44-3918 
"KRTAP8-1 WILD-TYPE" "KRTAP8-1 WILD-TYPE" "KRTAP8-1 WILD-TYPE" 
        TCGA-44-3919         TCGA-44-4112         TCGA-44-5643 
"KRTAP8-1 WILD-TYPE" "KRTAP8-1 WILD-TYPE" "KRTAP8-1 WILD-TYPE" 
        TCGA-44-5645         TCGA-44-6144         TCGA-44-6145 
"KRTAP8-1 WILD-TYPE" "KRTAP8-1 WILD-TYPE"   "KRTAP8-1 MUTATED" 
        TCGA-44-6146         TCGA-44-6147         TCGA-44-6148 
"KRTAP8-1 WILD-TYPE" "KRTAP8-1 WILD-TYPE" "KRTAP8-1 WILD-TYPE" 
        TCGA-44-6774         TCGA-44-6775         TCGA-44-6776 
"KRTAP8-1 WILD-TYPE" "KRTAP8-1 WILD-TYPE" "KRTAP8-1 WILD-TYPE" 
        TCGA-44-6777         TCGA-44-6778         TCGA-44-6779 
"KRTAP8-1 WILD-TYPE" "KRTAP8-1 WILD-TYPE" "KRTAP8-1 WILD-TYPE" 
        TCGA-49-4486         TCGA-49-4487         TCGA-49-4488 
"KRTAP8-1 WILD-TYPE"   "KRTAP8-1 MUTATED" "KRTAP8-1 WILD-TYPE" 
        TCGA-49-4490         TCGA-49-4494         TCGA-49-4501 
"KRTAP8-1 WILD-TYPE" "KRTAP8-1 WILD-TYPE" "KRTAP8-1 WILD-TYPE" 
        TCGA-49-4505         TCGA-49-4506         TCGA-49-4507 
"KRTAP8-1 WILD-TYPE" "KRTAP8-1 WILD-TYPE" "KRTAP8-1 WILD-TYPE" 
        TCGA-49-4510         TCGA-49-4512         TCGA-49-4514 
"KRTAP8-1 WILD-TYPE" "KRTAP8-1 WILD-TYPE" "KRTAP8-1 WILD-TYPE" 
        TCGA-49-6742         TCGA-49-6743         TCGA-49-6744 
"KRTAP8-1 WILD-TYPE" "KRTAP8-1 WILD-TYPE" "KRTAP8-1 WILD-TYPE" 
        TCGA-49-6745         TCGA-50-5044         TCGA-50-5045 
"KRTAP8-1 WILD-TYPE" "KRTAP8-1 WILD-TYPE" "KRTAP8-1 WILD-TYPE" 
        TCGA-50-5049         TCGA-50-5051         TCGA-50-5055 
"KRTAP8-1 WILD-TYPE" "KRTAP8-1 WILD-TYPE" "KRTAP8-1 WILD-TYPE" 
        TCGA-50-5066         TCGA-50-5068         TCGA-50-5072 
"KRTAP8-1 WILD-TYPE" "KRTAP8-1 WILD-TYPE" "KRTAP8-1 WILD-TYPE" 
        TCGA-50-5930         TCGA-50-5931         TCGA-50-5932 
"KRTAP8-1 WILD-TYPE" "KRTAP8-1 WILD-TYPE" "KRTAP8-1 WILD-TYPE" 
        TCGA-50-5933         TCGA-50-5935         TCGA-50-5936 
"KRTAP8-1 WILD-TYPE" "KRTAP8-1 WILD-TYPE" "KRTAP8-1 WILD-TYPE" 
        TCGA-50-5939         TCGA-50-5941         TCGA-50-5942 
"KRTAP8-1 WILD-TYPE" "KRTAP8-1 WILD-TYPE" "KRTAP8-1 WILD-TYPE" 
        TCGA-50-5944         TCGA-50-5946         TCGA-50-6590 
"KRTAP8-1 WILD-TYPE" "KRTAP8-1 WILD-TYPE" "KRTAP8-1 WILD-TYPE" 
        TCGA-50-6591         TCGA-50-6592         TCGA-50-6593 
"KRTAP8-1 WILD-TYPE" "KRTAP8-1 WILD-TYPE" "KRTAP8-1 WILD-TYPE" 
        TCGA-50-6594         TCGA-50-6595         TCGA-50-6597 
"KRTAP8-1 WILD-TYPE" "KRTAP8-1 WILD-TYPE" "KRTAP8-1 WILD-TYPE" 
        TCGA-55-1592         TCGA-55-1594         TCGA-55-1595 
"KRTAP8-1 WILD-TYPE" "KRTAP8-1 WILD-TYPE" "KRTAP8-1 WILD-TYPE" 
        TCGA-55-1596         TCGA-55-5899         TCGA-55-6543 
"KRTAP8-1 WILD-TYPE" "KRTAP8-1 WILD-TYPE" "KRTAP8-1 WILD-TYPE" 
        TCGA-55-6642         TCGA-55-6712         TCGA-64-1676 
"KRTAP8-1 WILD-TYPE" "KRTAP8-1 WILD-TYPE" "KRTAP8-1 WILD-TYPE" 
        TCGA-64-1677         TCGA-64-1678         TCGA-64-1680 
"KRTAP8-1 WILD-TYPE" "KRTAP8-1 WILD-TYPE" "KRTAP8-1 WILD-TYPE" 
        TCGA-64-5774         TCGA-64-5775         TCGA-64-5778 
"KRTAP8-1 WILD-TYPE" "KRTAP8-1 WILD-TYPE" "KRTAP8-1 WILD-TYPE" 
        TCGA-64-5779         TCGA-64-5781         TCGA-64-5815 
"KRTAP8-1 WILD-TYPE" "KRTAP8-1 WILD-TYPE" "KRTAP8-1 WILD-TYPE" 
        TCGA-67-3770         TCGA-67-3771         TCGA-67-3772 
"KRTAP8-1 WILD-TYPE" "KRTAP8-1 WILD-TYPE" "KRTAP8-1 WILD-TYPE" 
        TCGA-67-3773         TCGA-67-3774         TCGA-67-6215 
"KRTAP8-1 WILD-TYPE" "KRTAP8-1 WILD-TYPE" "KRTAP8-1 WILD-TYPE" 
        TCGA-67-6216         TCGA-67-6217         TCGA-71-6725 
"KRTAP8-1 WILD-TYPE" "KRTAP8-1 WILD-TYPE" "KRTAP8-1 WILD-TYPE" 
        TCGA-73-4658         TCGA-73-4659         TCGA-73-4662 
"KRTAP8-1 WILD-TYPE" "KRTAP8-1 WILD-TYPE" "KRTAP8-1 WILD-TYPE" 
        TCGA-73-4666         TCGA-73-4668         TCGA-73-4670 
"KRTAP8-1 WILD-TYPE" "KRTAP8-1 WILD-TYPE" "KRTAP8-1 WILD-TYPE" 
        TCGA-73-4675         TCGA-73-4676         TCGA-73-4677 
"KRTAP8-1 WILD-TYPE" "KRTAP8-1 WILD-TYPE" "KRTAP8-1 WILD-TYPE" 
        TCGA-91-6828         TCGA-91-6829         TCGA-91-6831 
"KRTAP8-1 WILD-TYPE" "KRTAP8-1 WILD-TYPE" "KRTAP8-1 WILD-TYPE" 
        TCGA-91-6835         TCGA-91-6836 
"KRTAP8-1 WILD-TYPE" "KRTAP8-1 WILD-TYPE" 
        TCGA-05-4249         TCGA-05-4250         TCGA-05-4382 
"KRTAP8-1 WILD-TYPE" "KRTAP8-1 WILD-TYPE" "KRTAP8-1 WILD-TYPE" 
        TCGA-05-4384         TCGA-05-4390         TCGA-05-4396 
"KRTAP8-1 WILD-TYPE" "KRTAP8-1 WILD-TYPE" "KRTAP8-1 WILD-TYPE" 
        TCGA-05-4397         TCGA-05-4398         TCGA-05-4402 
"KRTAP8-1 WILD-TYPE" "KRTAP8-1 WILD-TYPE" "KRTAP8-1 WILD-TYPE" 
        TCGA-05-4405         TCGA-05-4415         TCGA-05-4417 
"KRTAP8-1 WILD-TYPE" "KRTAP8-1 WILD-TYPE" "KRTAP8-1 WILD-TYPE" 
        TCGA-05-4418         TCGA-05-4420         TCGA-05-4424 
"KRTAP8-1 WILD-TYPE" "KRTAP8-1 WILD-TYPE" "KRTAP8-1 WILD-TYPE" 
        TCGA-05-4426         TCGA-05-4427         TCGA-05-4430 
"KRTAP8-1 WILD-TYPE" "KRTAP8-1 WILD-TYPE" "KRTAP8-1 WILD-TYPE" 
        TCGA-05-4432         TCGA-05-4433         TCGA-05-4434 
"KRTAP8-1 WILD-TYPE" "KRTAP8-1 WILD-TYPE" "KRTAP8-1 WILD-TYPE" 
        TCGA-05-5420         TCGA-05-5423         TCGA-05-5425 
"KRTAP8-1 WILD-TYPE" "KRTAP8-1 WILD-TYPE" "KRTAP8-1 WILD-TYPE" 
        TCGA-05-5429         TCGA-05-5715         TCGA-35-3615 
"KRTAP8-1 WILD-TYPE" "KRTAP8-1 WILD-TYPE" "KRTAP8-1 WILD-TYPE" 
        TCGA-35-4122         TCGA-35-4123         TCGA-35-5375 
"KRTAP8-1 WILD-TYPE" "KRTAP8-1 WILD-TYPE" "KRTAP8-1 WILD-TYPE" 
        TCGA-38-4625         TCGA-38-4626         TCGA-38-4627 
"KRTAP8-1 WILD-TYPE" "KRTAP8-1 WILD-TYPE" "KRTAP8-1 WILD-TYPE" 
        TCGA-38-4628         TCGA-38-4629         TCGA-38-4630 
"KRTAP8-1 WILD-TYPE" "KRTAP8-1 WILD-TYPE" "KRTAP8-1 WILD-TYPE" 
        TCGA-38-4631         TCGA-38-4632         TCGA-38-6178 
"KRTAP8-1 WILD-TYPE" "KRTAP8-1 WILD-TYPE" "KRTAP8-1 WILD-TYPE" 
        TCGA-44-2655         TCGA-44-2656         TCGA-44-2657 
"KRTAP8-1 WILD-TYPE" "KRTAP8-1 WILD-TYPE" "KRTAP8-1 WILD-TYPE" 
        TCGA-44-2659         TCGA-44-2661         TCGA-44-2662 
"KRTAP8-1 WILD-TYPE" "KRTAP8-1 WILD-TYPE" "KRTAP8-1 WILD-TYPE" 
        TCGA-44-2665         TCGA-44-2666         TCGA-44-2668 
"KRTAP8-1 WILD-TYPE" "KRTAP8-1 WILD-TYPE"   "KRTAP8-1 MUTATED" 
        TCGA-44-3396         TCGA-44-3398         TCGA-44-3918 
"KRTAP8-1 WILD-TYPE" "KRTAP8-1 WILD-TYPE" "KRTAP8-1 WILD-TYPE" 
        TCGA-44-3919         TCGA-44-4112         TCGA-44-5643 
"KRTAP8-1 WILD-TYPE" "KRTAP8-1 WILD-TYPE" "KRTAP8-1 WILD-TYPE" 
        TCGA-44-5645         TCGA-44-6144         TCGA-44-6145 
"KRTAP8-1 WILD-TYPE" "KRTAP8-1 WILD-TYPE"   "KRTAP8-1 MUTATED" 
        TCGA-44-6146         TCGA-44-6147         TCGA-44-6148 
"KRTAP8-1 WILD-TYPE" "KRTAP8-1 WILD-TYPE" "KRTAP8-1 WILD-TYPE" 
        TCGA-44-6774         TCGA-44-6775         TCGA-44-6776 
"KRTAP8-1 WILD-TYPE" "KRTAP8-1 WILD-TYPE" "KRTAP8-1 WILD-TYPE" 
        TCGA-44-6777         TCGA-44-6778         TCGA-44-6779 
"KRTAP8-1 WILD-TYPE" "KRTAP8-1 WILD-TYPE" "KRTAP8-1 WILD-TYPE" 
        TCGA-49-4486         TCGA-49-4487         TCGA-49-4488 
"KRTAP8-1 WILD-TYPE"   "KRTAP8-1 MUTATED" "KRTAP8-1 WILD-TYPE" 
        TCGA-49-4490         TCGA-49-4494         TCGA-49-4501 
"KRTAP8-1 WILD-TYPE" "KRTAP8-1 WILD-TYPE" "KRTAP8-1 WILD-TYPE" 
        TCGA-49-4505         TCGA-49-4506         TCGA-49-4507 
"KRTAP8-1 WILD-TYPE" "KRTAP8-1 WILD-TYPE" "KRTAP8-1 WILD-TYPE" 
        TCGA-49-4510         TCGA-49-4512         TCGA-49-4514 
"KRTAP8-1 WILD-TYPE" "KRTAP8-1 WILD-TYPE" "KRTAP8-1 WILD-TYPE" 
        TCGA-49-6742         TCGA-49-6743         TCGA-49-6744 
"KRTAP8-1 WILD-TYPE" "KRTAP8-1 WILD-TYPE" "KRTAP8-1 WILD-TYPE" 
        TCGA-49-6745         TCGA-50-5044         TCGA-50-5045 
"KRTAP8-1 WILD-TYPE" "KRTAP8-1 WILD-TYPE" "KRTAP8-1 WILD-TYPE" 
        TCGA-50-5049         TCGA-50-5051         TCGA-50-5055 
"KRTAP8-1 WILD-TYPE" "KRTAP8-1 WILD-TYPE" "KRTAP8-1 WILD-TYPE" 
        TCGA-50-5066         TCGA-50-5068         TCGA-50-5072 
"KRTAP8-1 WILD-TYPE" "KRTAP8-1 WILD-TYPE" "KRTAP8-1 WILD-TYPE" 
        TCGA-50-5930         TCGA-50-5931         TCGA-50-5932 
"KRTAP8-1 WILD-TYPE" "KRTAP8-1 WILD-TYPE" "KRTAP8-1 WILD-TYPE" 
        TCGA-50-5933         TCGA-50-5935         TCGA-50-5936 
"KRTAP8-1 WILD-TYPE" "KRTAP8-1 WILD-TYPE" "KRTAP8-1 WILD-TYPE" 
        TCGA-50-5939         TCGA-50-5941         TCGA-50-5942 
"KRTAP8-1 WILD-TYPE" "KRTAP8-1 WILD-TYPE" "KRTAP8-1 WILD-TYPE" 
        TCGA-50-5944         TCGA-50-5946         TCGA-50-6590 
"KRTAP8-1 WILD-TYPE" "KRTAP8-1 WILD-TYPE" "KRTAP8-1 WILD-TYPE" 
        TCGA-50-6591         TCGA-50-6592         TCGA-50-6593 
"KRTAP8-1 WILD-TYPE" "KRTAP8-1 WILD-TYPE" "KRTAP8-1 WILD-TYPE" 
        TCGA-50-6594         TCGA-50-6595         TCGA-50-6597 
"KRTAP8-1 WILD-TYPE" "KRTAP8-1 WILD-TYPE" "KRTAP8-1 WILD-TYPE" 
        TCGA-55-1592         TCGA-55-1594         TCGA-55-1595 
"KRTAP8-1 WILD-TYPE" "KRTAP8-1 WILD-TYPE" "KRTAP8-1 WILD-TYPE" 
        TCGA-55-1596         TCGA-55-5899         TCGA-55-6543 
"KRTAP8-1 WILD-TYPE" "KRTAP8-1 WILD-TYPE" "KRTAP8-1 WILD-TYPE" 
        TCGA-55-6642         TCGA-55-6712         TCGA-64-1676 
"KRTAP8-1 WILD-TYPE" "KRTAP8-1 WILD-TYPE" "KRTAP8-1 WILD-TYPE" 
        TCGA-64-1677         TCGA-64-1678         TCGA-64-1680 
"KRTAP8-1 WILD-TYPE" "KRTAP8-1 WILD-TYPE" "KRTAP8-1 WILD-TYPE" 
        TCGA-64-5774         TCGA-64-5775         TCGA-64-5778 
"KRTAP8-1 WILD-TYPE" "KRTAP8-1 WILD-TYPE" "KRTAP8-1 WILD-TYPE" 
        TCGA-64-5779         TCGA-64-5781         TCGA-64-5815 
"KRTAP8-1 WILD-TYPE" "KRTAP8-1 WILD-TYPE" "KRTAP8-1 WILD-TYPE" 
        TCGA-67-3770         TCGA-67-3771         TCGA-67-3772 
"KRTAP8-1 WILD-TYPE" "KRTAP8-1 WILD-TYPE" "KRTAP8-1 WILD-TYPE" 
        TCGA-67-3773         TCGA-67-3774         TCGA-67-6215 
"KRTAP8-1 WILD-TYPE" "KRTAP8-1 WILD-TYPE" "KRTAP8-1 WILD-TYPE" 
        TCGA-67-6216         TCGA-67-6217         TCGA-71-6725 
"KRTAP8-1 WILD-TYPE" "KRTAP8-1 WILD-TYPE" "KRTAP8-1 WILD-TYPE" 
        TCGA-73-4658         TCGA-73-4659         TCGA-73-4662 
"KRTAP8-1 WILD-TYPE" "KRTAP8-1 WILD-TYPE" "KRTAP8-1 WILD-TYPE" 
        TCGA-73-4666         TCGA-73-4668         TCGA-73-4670 
"KRTAP8-1 WILD-TYPE" "KRTAP8-1 WILD-TYPE" "KRTAP8-1 WILD-TYPE" 
        TCGA-73-4675         TCGA-73-4676         TCGA-73-4677 
"KRTAP8-1 WILD-TYPE" "KRTAP8-1 WILD-TYPE" "KRTAP8-1 WILD-TYPE" 
        TCGA-91-6828         TCGA-91-6829         TCGA-91-6831 
"KRTAP8-1 WILD-TYPE" "KRTAP8-1 WILD-TYPE" "KRTAP8-1 WILD-TYPE" 
        TCGA-91-6835         TCGA-91-6836 
"KRTAP8-1 WILD-TYPE" "KRTAP8-1 WILD-TYPE" 
[1] "hr=" "2.1"
D187V2, continuous
D187V3, binary
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  KRTAP8-1 MUTATED      2    1
  KRTAP8-1 WILD-TYPE   91   78
        clus
vv       KRTAP8-1 MUTATED KRTAP8-1 WILD-TYPE
  FEMALE                2                 91
  MALE                  1                 78
D187V4, continuous
D187V5, multiclass
D187V6, multiclass
    clus
vv   KRTAP8-1 MUTATED KRTAP8-1 WILD-TYPE
  T1                2                 39
  T2                1                107
  T3                0                 14
  T4                0                  8
D187V7, multiclass
       clus
vv      KRTAP8-1 MUTATED KRTAP8-1 WILD-TYPE
  N0                   3                 92
  N1                   0                 37
  N2+N3                0                 35
D187V8, multiclass
    clus
vv   KRTAP8-1 MUTATED KRTAP8-1 WILD-TYPE
  M0                3                134
  M1                0                  9
  MX                0                 22
D187V9, multiclass
     clus
vv    KRTAP8-1 MUTATED KRTAP8-1 WILD-TYPE
  I                  3                 85
  II                 0                 33
  III                0                 39
  IV                 0                  9
D187V10, binary
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  KRTAP8-1 MUTATED      0    3
  KRTAP8-1 WILD-TYPE   16  153
     clus
vv    KRTAP8-1 MUTATED KRTAP8-1 WILD-TYPE
  NO                 0                 16
  YES                3                153
D187V11, continuous
D187V12, continuous
[1] "Remove cluster labels:" "KRTAP8-1 MUTATED"      
clus
  KRTAP8-1 MUTATED KRTAP8-1 WILD-TYPE 
                 2                 80 
        TCGA-05-4384         TCGA-05-4390         TCGA-05-4396 
"KRTAP8-1 WILD-TYPE" "KRTAP8-1 WILD-TYPE" "KRTAP8-1 WILD-TYPE" 
        TCGA-05-4403         TCGA-05-4405         TCGA-05-4410 
"KRTAP8-1 WILD-TYPE" "KRTAP8-1 WILD-TYPE" "KRTAP8-1 WILD-TYPE" 
        TCGA-05-4415         TCGA-05-4417         TCGA-05-4424 
"KRTAP8-1 WILD-TYPE" "KRTAP8-1 WILD-TYPE" "KRTAP8-1 WILD-TYPE" 
        TCGA-05-4427         TCGA-05-4433         TCGA-05-5420 
"KRTAP8-1 WILD-TYPE" "KRTAP8-1 WILD-TYPE" "KRTAP8-1 WILD-TYPE" 
        TCGA-05-5423         TCGA-05-5425         TCGA-05-5428 
"KRTAP8-1 WILD-TYPE" "KRTAP8-1 WILD-TYPE" "KRTAP8-1 WILD-TYPE" 
        TCGA-35-4122         TCGA-35-4123         TCGA-35-5375 
"KRTAP8-1 WILD-TYPE" "KRTAP8-1 WILD-TYPE" "KRTAP8-1 WILD-TYPE" 
        TCGA-38-4629         TCGA-38-4632         TCGA-44-2655 
"KRTAP8-1 WILD-TYPE" "KRTAP8-1 WILD-TYPE" "KRTAP8-1 WILD-TYPE" 
        TCGA-44-2656         TCGA-44-2657         TCGA-44-2659 
"KRTAP8-1 WILD-TYPE" "KRTAP8-1 WILD-TYPE" "KRTAP8-1 WILD-TYPE" 
        TCGA-44-2662         TCGA-44-3398         TCGA-44-3918 
"KRTAP8-1 WILD-TYPE" "KRTAP8-1 WILD-TYPE" "KRTAP8-1 WILD-TYPE" 
        TCGA-44-4112         TCGA-44-5645         TCGA-44-6146 
"KRTAP8-1 WILD-TYPE" "KRTAP8-1 WILD-TYPE" "KRTAP8-1 WILD-TYPE" 
        TCGA-44-6147         TCGA-44-6148         TCGA-44-6775 
"KRTAP8-1 WILD-TYPE" "KRTAP8-1 WILD-TYPE" "KRTAP8-1 WILD-TYPE" 
        TCGA-44-6776         TCGA-44-6777         TCGA-44-6778 
"KRTAP8-1 WILD-TYPE" "KRTAP8-1 WILD-TYPE" "KRTAP8-1 WILD-TYPE" 
        TCGA-44-6779         TCGA-49-4486         TCGA-49-4488 
"KRTAP8-1 WILD-TYPE" "KRTAP8-1 WILD-TYPE" "KRTAP8-1 WILD-TYPE" 
        TCGA-49-4494         TCGA-49-4505         TCGA-49-4507 
"KRTAP8-1 WILD-TYPE" "KRTAP8-1 WILD-TYPE" "KRTAP8-1 WILD-TYPE" 
        TCGA-50-5051         TCGA-50-5072         TCGA-50-5939 
"KRTAP8-1 WILD-TYPE" "KRTAP8-1 WILD-TYPE" "KRTAP8-1 WILD-TYPE" 
        TCGA-50-5942         TCGA-50-5946         TCGA-50-6590 
"KRTAP8-1 WILD-TYPE" "KRTAP8-1 WILD-TYPE" "KRTAP8-1 WILD-TYPE" 
        TCGA-50-6594         TCGA-50-6595         TCGA-55-1592 
"KRTAP8-1 WILD-TYPE" "KRTAP8-1 WILD-TYPE" "KRTAP8-1 WILD-TYPE" 
        TCGA-55-1595         TCGA-55-6543         TCGA-55-6712 
"KRTAP8-1 WILD-TYPE" "KRTAP8-1 WILD-TYPE" "KRTAP8-1 WILD-TYPE" 
        TCGA-64-1678         TCGA-64-1680         TCGA-64-5774 
"KRTAP8-1 WILD-TYPE" "KRTAP8-1 WILD-TYPE" "KRTAP8-1 WILD-TYPE" 
        TCGA-64-5778         TCGA-64-5779         TCGA-64-5781 
"KRTAP8-1 WILD-TYPE" "KRTAP8-1 WILD-TYPE" "KRTAP8-1 WILD-TYPE" 
        TCGA-64-5815         TCGA-67-6217         TCGA-73-4659 
"KRTAP8-1 WILD-TYPE" "KRTAP8-1 WILD-TYPE" "KRTAP8-1 WILD-TYPE" 
        TCGA-73-4662         TCGA-73-4666         TCGA-73-4668 
"KRTAP8-1 WILD-TYPE" "KRTAP8-1 WILD-TYPE" "KRTAP8-1 WILD-TYPE" 
        TCGA-73-4670         TCGA-73-4675         TCGA-73-4676 
"KRTAP8-1 WILD-TYPE" "KRTAP8-1 WILD-TYPE" "KRTAP8-1 WILD-TYPE" 
        TCGA-73-4677         TCGA-75-5122         TCGA-75-5125 
"KRTAP8-1 WILD-TYPE" "KRTAP8-1 WILD-TYPE" "KRTAP8-1 WILD-TYPE" 
        TCGA-75-5126         TCGA-75-5146         TCGA-75-6206 
"KRTAP8-1 WILD-TYPE" "KRTAP8-1 WILD-TYPE" "KRTAP8-1 WILD-TYPE" 
        TCGA-75-6207         TCGA-80-5611         TCGA-91-6828 
"KRTAP8-1 WILD-TYPE" "KRTAP8-1 WILD-TYPE" "KRTAP8-1 WILD-TYPE" 
        TCGA-91-6829         TCGA-91-6835 
"KRTAP8-1 WILD-TYPE" "KRTAP8-1 WILD-TYPE" 
D187V13, multiclass
                                             clus
vv                                            KRTAP8-1 MUTATED
  CURRENT REFORMED SMOKER FOR < OR = 15 YEARS                3
  CURRENT REFORMED SMOKER FOR > 15 YEARS                     0
  CURRENT SMOKER                                             0
  LIFELONG NON-SMOKER                                        0
                                             clus
vv                                            KRTAP8-1 WILD-TYPE
  CURRENT REFORMED SMOKER FOR < OR = 15 YEARS                 59
  CURRENT REFORMED SMOKER FOR > 15 YEARS                      46
  CURRENT SMOKER                                              28
  LIFELONG NON-SMOKER                                         24
D187V14, continuous
[1] "Remove cluster labels:" "KRTAP8-1 MUTATED"      
clus
  KRTAP8-1 MUTATED KRTAP8-1 WILD-TYPE 
                 2                 66 
        TCGA-05-4384         TCGA-05-4390         TCGA-05-4396 
"KRTAP8-1 WILD-TYPE" "KRTAP8-1 WILD-TYPE" "KRTAP8-1 WILD-TYPE" 
        TCGA-05-4405         TCGA-05-4410         TCGA-05-4415 
"KRTAP8-1 WILD-TYPE" "KRTAP8-1 WILD-TYPE" "KRTAP8-1 WILD-TYPE" 
        TCGA-05-4417         TCGA-05-4424         TCGA-05-4427 
"KRTAP8-1 WILD-TYPE" "KRTAP8-1 WILD-TYPE" "KRTAP8-1 WILD-TYPE" 
        TCGA-05-4433         TCGA-05-5420         TCGA-05-5423 
"KRTAP8-1 WILD-TYPE" "KRTAP8-1 WILD-TYPE" "KRTAP8-1 WILD-TYPE" 
        TCGA-05-5425         TCGA-05-5428         TCGA-35-4122 
"KRTAP8-1 WILD-TYPE" "KRTAP8-1 WILD-TYPE" "KRTAP8-1 WILD-TYPE" 
        TCGA-35-4123         TCGA-35-5375         TCGA-38-4625 
"KRTAP8-1 WILD-TYPE" "KRTAP8-1 WILD-TYPE" "KRTAP8-1 WILD-TYPE" 
        TCGA-38-4626         TCGA-44-2655         TCGA-44-2656 
"KRTAP8-1 WILD-TYPE" "KRTAP8-1 WILD-TYPE" "KRTAP8-1 WILD-TYPE" 
        TCGA-44-2657         TCGA-44-2659         TCGA-44-2662 
"KRTAP8-1 WILD-TYPE" "KRTAP8-1 WILD-TYPE" "KRTAP8-1 WILD-TYPE" 
        TCGA-44-2666         TCGA-44-3396         TCGA-44-3398 
"KRTAP8-1 WILD-TYPE" "KRTAP8-1 WILD-TYPE" "KRTAP8-1 WILD-TYPE" 
        TCGA-44-3918         TCGA-44-4112         TCGA-44-5645 
"KRTAP8-1 WILD-TYPE" "KRTAP8-1 WILD-TYPE" "KRTAP8-1 WILD-TYPE" 
        TCGA-44-6144         TCGA-44-6147         TCGA-44-6148 
"KRTAP8-1 WILD-TYPE" "KRTAP8-1 WILD-TYPE" "KRTAP8-1 WILD-TYPE" 
        TCGA-44-6774         TCGA-44-6775         TCGA-44-6776 
"KRTAP8-1 WILD-TYPE" "KRTAP8-1 WILD-TYPE" "KRTAP8-1 WILD-TYPE" 
        TCGA-44-6777         TCGA-44-6778         TCGA-44-6779 
"KRTAP8-1 WILD-TYPE" "KRTAP8-1 WILD-TYPE" "KRTAP8-1 WILD-TYPE" 
        TCGA-49-4486         TCGA-49-4494         TCGA-49-4505 
"KRTAP8-1 WILD-TYPE" "KRTAP8-1 WILD-TYPE" "KRTAP8-1 WILD-TYPE" 
        TCGA-55-1592         TCGA-55-1594         TCGA-55-1595 
"KRTAP8-1 WILD-TYPE" "KRTAP8-1 WILD-TYPE" "KRTAP8-1 WILD-TYPE" 
        TCGA-55-1596         TCGA-55-5899         TCGA-55-6642 
"KRTAP8-1 WILD-TYPE" "KRTAP8-1 WILD-TYPE" "KRTAP8-1 WILD-TYPE" 
        TCGA-55-6712         TCGA-64-1677         TCGA-64-1678 
"KRTAP8-1 WILD-TYPE" "KRTAP8-1 WILD-TYPE" "KRTAP8-1 WILD-TYPE" 
        TCGA-64-1680         TCGA-64-5774         TCGA-64-5775 
"KRTAP8-1 WILD-TYPE" "KRTAP8-1 WILD-TYPE" "KRTAP8-1 WILD-TYPE" 
        TCGA-64-5778         TCGA-64-5779         TCGA-64-5781 
"KRTAP8-1 WILD-TYPE" "KRTAP8-1 WILD-TYPE" "KRTAP8-1 WILD-TYPE" 
        TCGA-73-4659         TCGA-73-4662         TCGA-73-4666 
"KRTAP8-1 WILD-TYPE" "KRTAP8-1 WILD-TYPE" "KRTAP8-1 WILD-TYPE" 
        TCGA-73-4668         TCGA-73-4670         TCGA-73-4675 
"KRTAP8-1 WILD-TYPE" "KRTAP8-1 WILD-TYPE" "KRTAP8-1 WILD-TYPE" 
        TCGA-73-4676         TCGA-91-6829         TCGA-91-6836 
"KRTAP8-1 WILD-TYPE" "KRTAP8-1 WILD-TYPE" "KRTAP8-1 WILD-TYPE" 

Clustering(188) Variable = LIPI MUTATION ANALYSIS
D188V1, survival
                sevent
clus2             0  1
  LIPI MUTATED    6  1
  LIPI WILD-TYPE 93 49
  LIPI MUTATED LIPI WILD-TYPE 
             7            142 
  LIPI MUTATED LIPI WILD-TYPE 
             1             49 
$`LIPI MUTATED`
TCGA-05-5423 TCGA-38-4626 TCGA-44-6774 TCGA-44-6777 TCGA-55-1594 TCGA-55-1596 
        4.96        85.32         5.42        32.45        38.73        45.17 
TCGA-67-3771 
        1.97 

$`LIPI WILD-TYPE`
TCGA-05-4249 TCGA-05-4250 TCGA-05-4382 TCGA-05-4384 TCGA-05-4390 TCGA-05-4396 
       38.07         3.98        19.92        14.01        37.02         9.96 
TCGA-05-4397 TCGA-05-4398 TCGA-05-4402 TCGA-05-4405 TCGA-05-4415 TCGA-05-4417 
       24.03        47.05         8.02        20.05         2.96        14.93 
TCGA-05-4418 TCGA-05-4420 TCGA-05-4424 TCGA-05-4426 TCGA-05-4427 TCGA-05-4430 
        8.98        29.95        30.02        26.01        26.01        25.02 
TCGA-05-4432 TCGA-05-4433 TCGA-05-4434 TCGA-05-5420 TCGA-05-5425 TCGA-05-5429 
       25.02        24.00        15.02         1.02         2.96         0.99 
TCGA-05-5715 TCGA-35-3615 TCGA-35-4122 TCGA-35-4123 TCGA-35-5375 TCGA-38-4625 
        2.04         0.46         7.36         5.95         8.68        47.61 
TCGA-38-4627 TCGA-38-4628 TCGA-38-4629 TCGA-38-4630 TCGA-38-4631 TCGA-38-4632 
       37.71        49.02        28.37        35.28        11.64        44.61 
TCGA-38-6178 TCGA-44-2655 TCGA-44-2656 TCGA-44-2657 TCGA-44-2659 TCGA-44-2661 
        5.19        18.87        19.10        13.15        17.39         3.39 
TCGA-44-2662 TCGA-44-2665 TCGA-44-2666 TCGA-44-2668 TCGA-44-3396 TCGA-44-3398 
       15.78        13.15         3.19         8.09        10.22         8.32 
TCGA-44-3918 TCGA-44-3919 TCGA-44-4112 TCGA-44-5643 TCGA-44-5645 TCGA-44-6144 
        6.44         6.21         4.60         3.48         6.84         0.30 
TCGA-44-6145 TCGA-44-6146 TCGA-44-6147 TCGA-44-6148 TCGA-44-6775 TCGA-44-6776 
        3.35         9.93         7.76         3.12         2.70        63.72 
TCGA-44-6778 TCGA-44-6779 TCGA-49-4486 TCGA-49-4487 TCGA-49-4488 TCGA-49-4490 
       36.49        16.41        76.21        28.11        28.57        12.66 
TCGA-49-4494 TCGA-49-4501 TCGA-49-4505 TCGA-49-4506 TCGA-49-4507 TCGA-49-4510 
       35.54        46.72        14.07        32.84         8.81        29.46 
TCGA-49-4512 TCGA-49-4514 TCGA-49-6742 TCGA-49-6743 TCGA-49-6744 TCGA-49-6745 
       29.75        43.20        15.02        12.13        12.99         4.93 
TCGA-50-5044 TCGA-50-5045 TCGA-50-5049 TCGA-50-5051 TCGA-50-5055 TCGA-50-5066 
       20.48        71.47        48.82        14.96        25.81         9.76 
TCGA-50-5068 TCGA-50-5072 TCGA-50-5930 TCGA-50-5931 TCGA-50-5932 TCGA-50-5933 
       49.28         8.05         9.27         8.78        35.87        77.88 
TCGA-50-5935 TCGA-50-5936 TCGA-50-5939 TCGA-50-5941 TCGA-50-5942 TCGA-50-5944 
       21.47         8.45        15.12         9.37         4.44        12.26 
TCGA-50-5946 TCGA-50-6590 TCGA-50-6591 TCGA-50-6592 TCGA-50-6593 TCGA-50-6594 
       11.47        42.31         3.88        25.51        11.05        12.16 
TCGA-50-6595 TCGA-50-6597 TCGA-55-1592 TCGA-55-1595 TCGA-55-5899 TCGA-55-6543 
        6.21        33.37        23.05        48.62         2.86         0.07 
TCGA-55-6642 TCGA-55-6712 TCGA-64-1676 TCGA-64-1677 TCGA-64-1678 TCGA-64-1680 
       32.61         0.79        56.81        20.65        39.09        37.02 
TCGA-64-5774 TCGA-64-5775 TCGA-64-5778 TCGA-64-5779 TCGA-64-5781 TCGA-64-5815 
       83.84         0.10        30.44        16.67        39.52         7.33 
TCGA-67-3770 TCGA-67-3772 TCGA-67-3773 TCGA-67-3774 TCGA-67-6215 TCGA-67-6216 
        0.99         0.59         2.04         0.59         0.89         0.69 
TCGA-67-6217 TCGA-71-6725 TCGA-73-4658 TCGA-73-4659 TCGA-73-4662 TCGA-73-4666 
       13.87         2.01        52.57        23.38        29.95        20.28 
TCGA-73-4668 TCGA-73-4670 TCGA-73-4675 TCGA-73-4676 TCGA-73-4677 TCGA-91-6828 
       15.35         0.46         1.32         4.01         1.25         1.22 
TCGA-91-6829 TCGA-91-6831 TCGA-91-6835 TCGA-91-6836 
       41.33         1.28         1.15         0.36 

  LIPI MUTATED LIPI WILD-TYPE 
          1.97           0.07 
  LIPI MUTATED LIPI WILD-TYPE 
         85.32          83.84 
  LIPI MUTATED LIPI WILD-TYPE 
         32.45          13.51 
[1] "2.0 - 85.3 (32.5)" "0.1 - 83.8 (13.5)"
    TCGA-05-4249     TCGA-05-4250     TCGA-05-4382     TCGA-05-4384 
"LIPI WILD-TYPE" "LIPI WILD-TYPE" "LIPI WILD-TYPE" "LIPI WILD-TYPE" 
    TCGA-05-4390     TCGA-05-4396     TCGA-05-4397     TCGA-05-4398 
"LIPI WILD-TYPE" "LIPI WILD-TYPE" "LIPI WILD-TYPE" "LIPI WILD-TYPE" 
    TCGA-05-4402     TCGA-05-4405     TCGA-05-4415     TCGA-05-4417 
"LIPI WILD-TYPE" "LIPI WILD-TYPE" "LIPI WILD-TYPE" "LIPI WILD-TYPE" 
    TCGA-05-4418     TCGA-05-4420     TCGA-05-4424     TCGA-05-4426 
"LIPI WILD-TYPE" "LIPI WILD-TYPE" "LIPI WILD-TYPE" "LIPI WILD-TYPE" 
    TCGA-05-4427     TCGA-05-4430     TCGA-05-4432     TCGA-05-4433 
"LIPI WILD-TYPE" "LIPI WILD-TYPE" "LIPI WILD-TYPE" "LIPI WILD-TYPE" 
    TCGA-05-4434     TCGA-05-5420     TCGA-05-5423     TCGA-05-5425 
"LIPI WILD-TYPE" "LIPI WILD-TYPE"   "LIPI MUTATED" "LIPI WILD-TYPE" 
    TCGA-05-5429     TCGA-05-5715     TCGA-35-3615     TCGA-35-4122 
"LIPI WILD-TYPE" "LIPI WILD-TYPE" "LIPI WILD-TYPE" "LIPI WILD-TYPE" 
    TCGA-35-4123     TCGA-35-5375     TCGA-38-4625     TCGA-38-4626 
"LIPI WILD-TYPE" "LIPI WILD-TYPE" "LIPI WILD-TYPE"   "LIPI MUTATED" 
    TCGA-38-4627     TCGA-38-4628     TCGA-38-4629     TCGA-38-4630 
"LIPI WILD-TYPE" "LIPI WILD-TYPE" "LIPI WILD-TYPE" "LIPI WILD-TYPE" 
    TCGA-38-4631     TCGA-38-4632     TCGA-38-6178     TCGA-44-2655 
"LIPI WILD-TYPE" "LIPI WILD-TYPE" "LIPI WILD-TYPE" "LIPI WILD-TYPE" 
    TCGA-44-2656     TCGA-44-2657     TCGA-44-2659     TCGA-44-2661 
"LIPI WILD-TYPE" "LIPI WILD-TYPE" "LIPI WILD-TYPE" "LIPI WILD-TYPE" 
    TCGA-44-2662     TCGA-44-2665     TCGA-44-2666     TCGA-44-2668 
"LIPI WILD-TYPE" "LIPI WILD-TYPE" "LIPI WILD-TYPE" "LIPI WILD-TYPE" 
    TCGA-44-3396     TCGA-44-3398     TCGA-44-3918     TCGA-44-3919 
"LIPI WILD-TYPE" "LIPI WILD-TYPE" "LIPI WILD-TYPE" "LIPI WILD-TYPE" 
    TCGA-44-4112     TCGA-44-5643     TCGA-44-5645     TCGA-44-6144 
"LIPI WILD-TYPE" "LIPI WILD-TYPE" "LIPI WILD-TYPE" "LIPI WILD-TYPE" 
    TCGA-44-6145     TCGA-44-6146     TCGA-44-6147     TCGA-44-6148 
"LIPI WILD-TYPE" "LIPI WILD-TYPE" "LIPI WILD-TYPE" "LIPI WILD-TYPE" 
    TCGA-44-6774     TCGA-44-6775     TCGA-44-6776     TCGA-44-6777 
  "LIPI MUTATED" "LIPI WILD-TYPE" "LIPI WILD-TYPE"   "LIPI MUTATED" 
    TCGA-44-6778     TCGA-44-6779     TCGA-49-4486     TCGA-49-4487 
"LIPI WILD-TYPE" "LIPI WILD-TYPE" "LIPI WILD-TYPE" "LIPI WILD-TYPE" 
    TCGA-49-4488     TCGA-49-4490     TCGA-49-4494     TCGA-49-4501 
"LIPI WILD-TYPE" "LIPI WILD-TYPE" "LIPI WILD-TYPE" "LIPI WILD-TYPE" 
    TCGA-49-4505     TCGA-49-4506     TCGA-49-4507     TCGA-49-4510 
"LIPI WILD-TYPE" "LIPI WILD-TYPE" "LIPI WILD-TYPE" "LIPI WILD-TYPE" 
    TCGA-49-4512     TCGA-49-4514     TCGA-49-6742     TCGA-49-6743 
"LIPI WILD-TYPE" "LIPI WILD-TYPE" "LIPI WILD-TYPE" "LIPI WILD-TYPE" 
    TCGA-49-6744     TCGA-49-6745     TCGA-50-5044     TCGA-50-5045 
"LIPI WILD-TYPE" "LIPI WILD-TYPE" "LIPI WILD-TYPE" "LIPI WILD-TYPE" 
    TCGA-50-5049     TCGA-50-5051     TCGA-50-5055     TCGA-50-5066 
"LIPI WILD-TYPE" "LIPI WILD-TYPE" "LIPI WILD-TYPE" "LIPI WILD-TYPE" 
    TCGA-50-5068     TCGA-50-5072     TCGA-50-5930     TCGA-50-5931 
"LIPI WILD-TYPE" "LIPI WILD-TYPE" "LIPI WILD-TYPE" "LIPI WILD-TYPE" 
    TCGA-50-5932     TCGA-50-5933     TCGA-50-5935     TCGA-50-5936 
"LIPI WILD-TYPE" "LIPI WILD-TYPE" "LIPI WILD-TYPE" "LIPI WILD-TYPE" 
    TCGA-50-5939     TCGA-50-5941     TCGA-50-5942     TCGA-50-5944 
"LIPI WILD-TYPE" "LIPI WILD-TYPE" "LIPI WILD-TYPE" "LIPI WILD-TYPE" 
    TCGA-50-5946     TCGA-50-6590     TCGA-50-6591     TCGA-50-6592 
"LIPI WILD-TYPE" "LIPI WILD-TYPE" "LIPI WILD-TYPE" "LIPI WILD-TYPE" 
    TCGA-50-6593     TCGA-50-6594     TCGA-50-6595     TCGA-50-6597 
"LIPI WILD-TYPE" "LIPI WILD-TYPE" "LIPI WILD-TYPE" "LIPI WILD-TYPE" 
    TCGA-55-1592     TCGA-55-1594     TCGA-55-1595     TCGA-55-1596 
"LIPI WILD-TYPE"   "LIPI MUTATED" "LIPI WILD-TYPE"   "LIPI MUTATED" 
    TCGA-55-5899     TCGA-55-6543     TCGA-55-6642     TCGA-55-6712 
"LIPI WILD-TYPE" "LIPI WILD-TYPE" "LIPI WILD-TYPE" "LIPI WILD-TYPE" 
    TCGA-64-1676     TCGA-64-1677     TCGA-64-1678     TCGA-64-1680 
"LIPI WILD-TYPE" "LIPI WILD-TYPE" "LIPI WILD-TYPE" "LIPI WILD-TYPE" 
    TCGA-64-5774     TCGA-64-5775     TCGA-64-5778     TCGA-64-5779 
"LIPI WILD-TYPE" "LIPI WILD-TYPE" "LIPI WILD-TYPE" "LIPI WILD-TYPE" 
    TCGA-64-5781     TCGA-64-5815     TCGA-67-3770     TCGA-67-3771 
"LIPI WILD-TYPE" "LIPI WILD-TYPE" "LIPI WILD-TYPE"   "LIPI MUTATED" 
    TCGA-67-3772     TCGA-67-3773     TCGA-67-3774     TCGA-67-6215 
"LIPI WILD-TYPE" "LIPI WILD-TYPE" "LIPI WILD-TYPE" "LIPI WILD-TYPE" 
    TCGA-67-6216     TCGA-67-6217     TCGA-71-6725     TCGA-73-4658 
"LIPI WILD-TYPE" "LIPI WILD-TYPE" "LIPI WILD-TYPE" "LIPI WILD-TYPE" 
    TCGA-73-4659     TCGA-73-4662     TCGA-73-4666     TCGA-73-4668 
"LIPI WILD-TYPE" "LIPI WILD-TYPE" "LIPI WILD-TYPE" "LIPI WILD-TYPE" 
    TCGA-73-4670     TCGA-73-4675     TCGA-73-4676     TCGA-73-4677 
"LIPI WILD-TYPE" "LIPI WILD-TYPE" "LIPI WILD-TYPE" "LIPI WILD-TYPE" 
    TCGA-91-6828     TCGA-91-6829     TCGA-91-6831     TCGA-91-6835 
"LIPI WILD-TYPE" "LIPI WILD-TYPE" "LIPI WILD-TYPE" "LIPI WILD-TYPE" 
    TCGA-91-6836 
"LIPI WILD-TYPE" 
    TCGA-05-4249     TCGA-05-4250     TCGA-05-4382     TCGA-05-4384 
"LIPI WILD-TYPE" "LIPI WILD-TYPE" "LIPI WILD-TYPE" "LIPI WILD-TYPE" 
    TCGA-05-4390     TCGA-05-4396     TCGA-05-4397     TCGA-05-4398 
"LIPI WILD-TYPE" "LIPI WILD-TYPE" "LIPI WILD-TYPE" "LIPI WILD-TYPE" 
    TCGA-05-4402     TCGA-05-4405     TCGA-05-4415     TCGA-05-4417 
"LIPI WILD-TYPE" "LIPI WILD-TYPE" "LIPI WILD-TYPE" "LIPI WILD-TYPE" 
    TCGA-05-4418     TCGA-05-4420     TCGA-05-4424     TCGA-05-4426 
"LIPI WILD-TYPE" "LIPI WILD-TYPE" "LIPI WILD-TYPE" "LIPI WILD-TYPE" 
    TCGA-05-4427     TCGA-05-4430     TCGA-05-4432     TCGA-05-4433 
"LIPI WILD-TYPE" "LIPI WILD-TYPE" "LIPI WILD-TYPE" "LIPI WILD-TYPE" 
    TCGA-05-4434     TCGA-05-5420     TCGA-05-5423     TCGA-05-5425 
"LIPI WILD-TYPE" "LIPI WILD-TYPE"   "LIPI MUTATED" "LIPI WILD-TYPE" 
    TCGA-05-5429     TCGA-05-5715     TCGA-35-3615     TCGA-35-4122 
"LIPI WILD-TYPE" "LIPI WILD-TYPE" "LIPI WILD-TYPE" "LIPI WILD-TYPE" 
    TCGA-35-4123     TCGA-35-5375     TCGA-38-4625     TCGA-38-4626 
"LIPI WILD-TYPE" "LIPI WILD-TYPE" "LIPI WILD-TYPE"   "LIPI MUTATED" 
    TCGA-38-4627     TCGA-38-4628     TCGA-38-4629     TCGA-38-4630 
"LIPI WILD-TYPE" "LIPI WILD-TYPE" "LIPI WILD-TYPE" "LIPI WILD-TYPE" 
    TCGA-38-4631     TCGA-38-4632     TCGA-38-6178     TCGA-44-2655 
"LIPI WILD-TYPE" "LIPI WILD-TYPE" "LIPI WILD-TYPE" "LIPI WILD-TYPE" 
    TCGA-44-2656     TCGA-44-2657     TCGA-44-2659     TCGA-44-2661 
"LIPI WILD-TYPE" "LIPI WILD-TYPE" "LIPI WILD-TYPE" "LIPI WILD-TYPE" 
    TCGA-44-2662     TCGA-44-2665     TCGA-44-2666     TCGA-44-2668 
"LIPI WILD-TYPE" "LIPI WILD-TYPE" "LIPI WILD-TYPE" "LIPI WILD-TYPE" 
    TCGA-44-3396     TCGA-44-3398     TCGA-44-3918     TCGA-44-3919 
"LIPI WILD-TYPE" "LIPI WILD-TYPE" "LIPI WILD-TYPE" "LIPI WILD-TYPE" 
    TCGA-44-4112     TCGA-44-5643     TCGA-44-5645     TCGA-44-6144 
"LIPI WILD-TYPE" "LIPI WILD-TYPE" "LIPI WILD-TYPE" "LIPI WILD-TYPE" 
    TCGA-44-6145     TCGA-44-6146     TCGA-44-6147     TCGA-44-6148 
"LIPI WILD-TYPE" "LIPI WILD-TYPE" "LIPI WILD-TYPE" "LIPI WILD-TYPE" 
    TCGA-44-6774     TCGA-44-6775     TCGA-44-6776     TCGA-44-6777 
  "LIPI MUTATED" "LIPI WILD-TYPE" "LIPI WILD-TYPE"   "LIPI MUTATED" 
    TCGA-44-6778     TCGA-44-6779     TCGA-49-4486     TCGA-49-4487 
"LIPI WILD-TYPE" "LIPI WILD-TYPE" "LIPI WILD-TYPE" "LIPI WILD-TYPE" 
    TCGA-49-4488     TCGA-49-4490     TCGA-49-4494     TCGA-49-4501 
"LIPI WILD-TYPE" "LIPI WILD-TYPE" "LIPI WILD-TYPE" "LIPI WILD-TYPE" 
    TCGA-49-4505     TCGA-49-4506     TCGA-49-4507     TCGA-49-4510 
"LIPI WILD-TYPE" "LIPI WILD-TYPE" "LIPI WILD-TYPE" "LIPI WILD-TYPE" 
    TCGA-49-4512     TCGA-49-4514     TCGA-49-6742     TCGA-49-6743 
"LIPI WILD-TYPE" "LIPI WILD-TYPE" "LIPI WILD-TYPE" "LIPI WILD-TYPE" 
    TCGA-49-6744     TCGA-49-6745     TCGA-50-5044     TCGA-50-5045 
"LIPI WILD-TYPE" "LIPI WILD-TYPE" "LIPI WILD-TYPE" "LIPI WILD-TYPE" 
    TCGA-50-5049     TCGA-50-5051     TCGA-50-5055     TCGA-50-5066 
"LIPI WILD-TYPE" "LIPI WILD-TYPE" "LIPI WILD-TYPE" "LIPI WILD-TYPE" 
    TCGA-50-5068     TCGA-50-5072     TCGA-50-5930     TCGA-50-5931 
"LIPI WILD-TYPE" "LIPI WILD-TYPE" "LIPI WILD-TYPE" "LIPI WILD-TYPE" 
    TCGA-50-5932     TCGA-50-5933     TCGA-50-5935     TCGA-50-5936 
"LIPI WILD-TYPE" "LIPI WILD-TYPE" "LIPI WILD-TYPE" "LIPI WILD-TYPE" 
    TCGA-50-5939     TCGA-50-5941     TCGA-50-5942     TCGA-50-5944 
"LIPI WILD-TYPE" "LIPI WILD-TYPE" "LIPI WILD-TYPE" "LIPI WILD-TYPE" 
    TCGA-50-5946     TCGA-50-6590     TCGA-50-6591     TCGA-50-6592 
"LIPI WILD-TYPE" "LIPI WILD-TYPE" "LIPI WILD-TYPE" "LIPI WILD-TYPE" 
    TCGA-50-6593     TCGA-50-6594     TCGA-50-6595     TCGA-50-6597 
"LIPI WILD-TYPE" "LIPI WILD-TYPE" "LIPI WILD-TYPE" "LIPI WILD-TYPE" 
    TCGA-55-1592     TCGA-55-1594     TCGA-55-1595     TCGA-55-1596 
"LIPI WILD-TYPE"   "LIPI MUTATED" "LIPI WILD-TYPE"   "LIPI MUTATED" 
    TCGA-55-5899     TCGA-55-6543     TCGA-55-6642     TCGA-55-6712 
"LIPI WILD-TYPE" "LIPI WILD-TYPE" "LIPI WILD-TYPE" "LIPI WILD-TYPE" 
    TCGA-64-1676     TCGA-64-1677     TCGA-64-1678     TCGA-64-1680 
"LIPI WILD-TYPE" "LIPI WILD-TYPE" "LIPI WILD-TYPE" "LIPI WILD-TYPE" 
    TCGA-64-5774     TCGA-64-5775     TCGA-64-5778     TCGA-64-5779 
"LIPI WILD-TYPE" "LIPI WILD-TYPE" "LIPI WILD-TYPE" "LIPI WILD-TYPE" 
    TCGA-64-5781     TCGA-64-5815     TCGA-67-3770     TCGA-67-3771 
"LIPI WILD-TYPE" "LIPI WILD-TYPE" "LIPI WILD-TYPE"   "LIPI MUTATED" 
    TCGA-67-3772     TCGA-67-3773     TCGA-67-3774     TCGA-67-6215 
"LIPI WILD-TYPE" "LIPI WILD-TYPE" "LIPI WILD-TYPE" "LIPI WILD-TYPE" 
    TCGA-67-6216     TCGA-67-6217     TCGA-71-6725     TCGA-73-4658 
"LIPI WILD-TYPE" "LIPI WILD-TYPE" "LIPI WILD-TYPE" "LIPI WILD-TYPE" 
    TCGA-73-4659     TCGA-73-4662     TCGA-73-4666     TCGA-73-4668 
"LIPI WILD-TYPE" "LIPI WILD-TYPE" "LIPI WILD-TYPE" "LIPI WILD-TYPE" 
    TCGA-73-4670     TCGA-73-4675     TCGA-73-4676     TCGA-73-4677 
"LIPI WILD-TYPE" "LIPI WILD-TYPE" "LIPI WILD-TYPE" "LIPI WILD-TYPE" 
    TCGA-91-6828     TCGA-91-6829     TCGA-91-6831     TCGA-91-6835 
"LIPI WILD-TYPE" "LIPI WILD-TYPE" "LIPI WILD-TYPE" "LIPI WILD-TYPE" 
    TCGA-91-6836 
"LIPI WILD-TYPE" 
    TCGA-05-4249     TCGA-05-4250     TCGA-05-4382     TCGA-05-4384 
"LIPI WILD-TYPE" "LIPI WILD-TYPE" "LIPI WILD-TYPE" "LIPI WILD-TYPE" 
    TCGA-05-4390     TCGA-05-4396     TCGA-05-4397     TCGA-05-4398 
"LIPI WILD-TYPE" "LIPI WILD-TYPE" "LIPI WILD-TYPE" "LIPI WILD-TYPE" 
    TCGA-05-4402     TCGA-05-4405     TCGA-05-4415     TCGA-05-4417 
"LIPI WILD-TYPE" "LIPI WILD-TYPE" "LIPI WILD-TYPE" "LIPI WILD-TYPE" 
    TCGA-05-4418     TCGA-05-4420     TCGA-05-4424     TCGA-05-4426 
"LIPI WILD-TYPE" "LIPI WILD-TYPE" "LIPI WILD-TYPE" "LIPI WILD-TYPE" 
    TCGA-05-4427     TCGA-05-4430     TCGA-05-4432     TCGA-05-4433 
"LIPI WILD-TYPE" "LIPI WILD-TYPE" "LIPI WILD-TYPE" "LIPI WILD-TYPE" 
    TCGA-05-4434     TCGA-05-5420     TCGA-05-5423     TCGA-05-5425 
"LIPI WILD-TYPE" "LIPI WILD-TYPE"   "LIPI MUTATED" "LIPI WILD-TYPE" 
    TCGA-05-5429     TCGA-05-5715     TCGA-35-3615     TCGA-35-4122 
"LIPI WILD-TYPE" "LIPI WILD-TYPE" "LIPI WILD-TYPE" "LIPI WILD-TYPE" 
    TCGA-35-4123     TCGA-35-5375     TCGA-38-4625     TCGA-38-4626 
"LIPI WILD-TYPE" "LIPI WILD-TYPE" "LIPI WILD-TYPE"   "LIPI MUTATED" 
    TCGA-38-4627     TCGA-38-4628     TCGA-38-4629     TCGA-38-4630 
"LIPI WILD-TYPE" "LIPI WILD-TYPE" "LIPI WILD-TYPE" "LIPI WILD-TYPE" 
    TCGA-38-4631     TCGA-38-4632     TCGA-38-6178     TCGA-44-2655 
"LIPI WILD-TYPE" "LIPI WILD-TYPE" "LIPI WILD-TYPE" "LIPI WILD-TYPE" 
    TCGA-44-2656     TCGA-44-2657     TCGA-44-2659     TCGA-44-2661 
"LIPI WILD-TYPE" "LIPI WILD-TYPE" "LIPI WILD-TYPE" "LIPI WILD-TYPE" 
    TCGA-44-2662     TCGA-44-2665     TCGA-44-2666     TCGA-44-2668 
"LIPI WILD-TYPE" "LIPI WILD-TYPE" "LIPI WILD-TYPE" "LIPI WILD-TYPE" 
    TCGA-44-3396     TCGA-44-3398     TCGA-44-3918     TCGA-44-3919 
"LIPI WILD-TYPE" "LIPI WILD-TYPE" "LIPI WILD-TYPE" "LIPI WILD-TYPE" 
    TCGA-44-4112     TCGA-44-5643     TCGA-44-5645     TCGA-44-6144 
"LIPI WILD-TYPE" "LIPI WILD-TYPE" "LIPI WILD-TYPE" "LIPI WILD-TYPE" 
    TCGA-44-6145     TCGA-44-6146     TCGA-44-6147     TCGA-44-6148 
"LIPI WILD-TYPE" "LIPI WILD-TYPE" "LIPI WILD-TYPE" "LIPI WILD-TYPE" 
    TCGA-44-6774     TCGA-44-6775     TCGA-44-6776     TCGA-44-6777 
  "LIPI MUTATED" "LIPI WILD-TYPE" "LIPI WILD-TYPE"   "LIPI MUTATED" 
    TCGA-44-6778     TCGA-44-6779     TCGA-49-4486     TCGA-49-4487 
"LIPI WILD-TYPE" "LIPI WILD-TYPE" "LIPI WILD-TYPE" "LIPI WILD-TYPE" 
    TCGA-49-4488     TCGA-49-4490     TCGA-49-4494     TCGA-49-4501 
"LIPI WILD-TYPE" "LIPI WILD-TYPE" "LIPI WILD-TYPE" "LIPI WILD-TYPE" 
    TCGA-49-4505     TCGA-49-4506     TCGA-49-4507     TCGA-49-4510 
"LIPI WILD-TYPE" "LIPI WILD-TYPE" "LIPI WILD-TYPE" "LIPI WILD-TYPE" 
    TCGA-49-4512     TCGA-49-4514     TCGA-49-6742     TCGA-49-6743 
"LIPI WILD-TYPE" "LIPI WILD-TYPE" "LIPI WILD-TYPE" "LIPI WILD-TYPE" 
    TCGA-49-6744     TCGA-49-6745     TCGA-50-5044     TCGA-50-5045 
"LIPI WILD-TYPE" "LIPI WILD-TYPE" "LIPI WILD-TYPE" "LIPI WILD-TYPE" 
    TCGA-50-5049     TCGA-50-5051     TCGA-50-5055     TCGA-50-5066 
"LIPI WILD-TYPE" "LIPI WILD-TYPE" "LIPI WILD-TYPE" "LIPI WILD-TYPE" 
    TCGA-50-5068     TCGA-50-5072     TCGA-50-5930     TCGA-50-5931 
"LIPI WILD-TYPE" "LIPI WILD-TYPE" "LIPI WILD-TYPE" "LIPI WILD-TYPE" 
    TCGA-50-5932     TCGA-50-5933     TCGA-50-5935     TCGA-50-5936 
"LIPI WILD-TYPE" "LIPI WILD-TYPE" "LIPI WILD-TYPE" "LIPI WILD-TYPE" 
    TCGA-50-5939     TCGA-50-5941     TCGA-50-5942     TCGA-50-5944 
"LIPI WILD-TYPE" "LIPI WILD-TYPE" "LIPI WILD-TYPE" "LIPI WILD-TYPE" 
    TCGA-50-5946     TCGA-50-6590     TCGA-50-6591     TCGA-50-6592 
"LIPI WILD-TYPE" "LIPI WILD-TYPE" "LIPI WILD-TYPE" "LIPI WILD-TYPE" 
    TCGA-50-6593     TCGA-50-6594     TCGA-50-6595     TCGA-50-6597 
"LIPI WILD-TYPE" "LIPI WILD-TYPE" "LIPI WILD-TYPE" "LIPI WILD-TYPE" 
    TCGA-55-1592     TCGA-55-1594     TCGA-55-1595     TCGA-55-1596 
"LIPI WILD-TYPE"   "LIPI MUTATED" "LIPI WILD-TYPE"   "LIPI MUTATED" 
    TCGA-55-5899     TCGA-55-6543     TCGA-55-6642     TCGA-55-6712 
"LIPI WILD-TYPE" "LIPI WILD-TYPE" "LIPI WILD-TYPE" "LIPI WILD-TYPE" 
    TCGA-64-1676     TCGA-64-1677     TCGA-64-1678     TCGA-64-1680 
"LIPI WILD-TYPE" "LIPI WILD-TYPE" "LIPI WILD-TYPE" "LIPI WILD-TYPE" 
    TCGA-64-5774     TCGA-64-5775     TCGA-64-5778     TCGA-64-5779 
"LIPI WILD-TYPE" "LIPI WILD-TYPE" "LIPI WILD-TYPE" "LIPI WILD-TYPE" 
    TCGA-64-5781     TCGA-64-5815     TCGA-67-3770     TCGA-67-3771 
"LIPI WILD-TYPE" "LIPI WILD-TYPE" "LIPI WILD-TYPE"   "LIPI MUTATED" 
    TCGA-67-3772     TCGA-67-3773     TCGA-67-3774     TCGA-67-6215 
"LIPI WILD-TYPE" "LIPI WILD-TYPE" "LIPI WILD-TYPE" "LIPI WILD-TYPE" 
    TCGA-67-6216     TCGA-67-6217     TCGA-71-6725     TCGA-73-4658 
"LIPI WILD-TYPE" "LIPI WILD-TYPE" "LIPI WILD-TYPE" "LIPI WILD-TYPE" 
    TCGA-73-4659     TCGA-73-4662     TCGA-73-4666     TCGA-73-4668 
"LIPI WILD-TYPE" "LIPI WILD-TYPE" "LIPI WILD-TYPE" "LIPI WILD-TYPE" 
    TCGA-73-4670     TCGA-73-4675     TCGA-73-4676     TCGA-73-4677 
"LIPI WILD-TYPE" "LIPI WILD-TYPE" "LIPI WILD-TYPE" "LIPI WILD-TYPE" 
    TCGA-91-6828     TCGA-91-6829     TCGA-91-6831     TCGA-91-6835 
"LIPI WILD-TYPE" "LIPI WILD-TYPE" "LIPI WILD-TYPE" "LIPI WILD-TYPE" 
    TCGA-91-6836 
"LIPI WILD-TYPE" 
[1] "hr=" "4.7"
D188V2, continuous
D188V3, binary
[1] "tbl2"
                cls
clus             [,1] [,2]
  LIPI MUTATED      4    3
  LIPI WILD-TYPE   89   76
        clus
vv       LIPI MUTATED LIPI WILD-TYPE
  FEMALE            4             89
  MALE              3             76
D188V4, continuous
D188V5, multiclass
D188V6, multiclass
    clus
vv   LIPI MUTATED LIPI WILD-TYPE
  T1            2             39
  T2            5            103
  T3            0             14
  T4            0              8
D188V7, multiclass
       clus
vv      LIPI MUTATED LIPI WILD-TYPE
  N0               2             93
  N1               2             35
  N2+N3            2             33
D188V8, multiclass
    clus
vv   LIPI MUTATED LIPI WILD-TYPE
  M0            6            131
  M1            0              9
  MX            1             21
D188V9, multiclass
     clus
vv    LIPI MUTATED LIPI WILD-TYPE
  I              2             86
  II             3             30
  III            2             37
  IV             0              9
D188V10, binary
[1] "tbl2"
                cls
clus             [,1] [,2]
  LIPI MUTATED      1    6
  LIPI WILD-TYPE   15  150
     clus
vv    LIPI MUTATED LIPI WILD-TYPE
  NO             1             15
  YES            6            150
D188V11, continuous
D188V12, continuous
[1] "Remove cluster labels:" "LIPI MUTATED"          
clus
  LIPI MUTATED LIPI WILD-TYPE 
             2             80 
    TCGA-05-4384     TCGA-05-4390     TCGA-05-4396     TCGA-05-4403 
"LIPI WILD-TYPE" "LIPI WILD-TYPE" "LIPI WILD-TYPE" "LIPI WILD-TYPE" 
    TCGA-05-4405     TCGA-05-4410     TCGA-05-4415     TCGA-05-4417 
"LIPI WILD-TYPE" "LIPI WILD-TYPE" "LIPI WILD-TYPE" "LIPI WILD-TYPE" 
    TCGA-05-4424     TCGA-05-4427     TCGA-05-4433     TCGA-05-5420 
"LIPI WILD-TYPE" "LIPI WILD-TYPE" "LIPI WILD-TYPE" "LIPI WILD-TYPE" 
    TCGA-05-5425     TCGA-05-5428     TCGA-35-4122     TCGA-35-4123 
"LIPI WILD-TYPE" "LIPI WILD-TYPE" "LIPI WILD-TYPE" "LIPI WILD-TYPE" 
    TCGA-35-5375     TCGA-38-4629     TCGA-38-4632     TCGA-44-2655 
"LIPI WILD-TYPE" "LIPI WILD-TYPE" "LIPI WILD-TYPE" "LIPI WILD-TYPE" 
    TCGA-44-2656     TCGA-44-2657     TCGA-44-2659     TCGA-44-2662 
"LIPI WILD-TYPE" "LIPI WILD-TYPE" "LIPI WILD-TYPE" "LIPI WILD-TYPE" 
    TCGA-44-2668     TCGA-44-3398     TCGA-44-3918     TCGA-44-4112 
"LIPI WILD-TYPE" "LIPI WILD-TYPE" "LIPI WILD-TYPE" "LIPI WILD-TYPE" 
    TCGA-44-5645     TCGA-44-6145     TCGA-44-6146     TCGA-44-6147 
"LIPI WILD-TYPE" "LIPI WILD-TYPE" "LIPI WILD-TYPE" "LIPI WILD-TYPE" 
    TCGA-44-6148     TCGA-44-6775     TCGA-44-6776     TCGA-44-6778 
"LIPI WILD-TYPE" "LIPI WILD-TYPE" "LIPI WILD-TYPE" "LIPI WILD-TYPE" 
    TCGA-44-6779     TCGA-49-4486     TCGA-49-4488     TCGA-49-4494 
"LIPI WILD-TYPE" "LIPI WILD-TYPE" "LIPI WILD-TYPE" "LIPI WILD-TYPE" 
    TCGA-49-4505     TCGA-49-4507     TCGA-50-5051     TCGA-50-5072 
"LIPI WILD-TYPE" "LIPI WILD-TYPE" "LIPI WILD-TYPE" "LIPI WILD-TYPE" 
    TCGA-50-5939     TCGA-50-5942     TCGA-50-5946     TCGA-50-6590 
"LIPI WILD-TYPE" "LIPI WILD-TYPE" "LIPI WILD-TYPE" "LIPI WILD-TYPE" 
    TCGA-50-6594     TCGA-50-6595     TCGA-55-1592     TCGA-55-1595 
"LIPI WILD-TYPE" "LIPI WILD-TYPE" "LIPI WILD-TYPE" "LIPI WILD-TYPE" 
    TCGA-55-6543     TCGA-55-6712     TCGA-64-1678     TCGA-64-1680 
"LIPI WILD-TYPE" "LIPI WILD-TYPE" "LIPI WILD-TYPE" "LIPI WILD-TYPE" 
    TCGA-64-5774     TCGA-64-5778     TCGA-64-5779     TCGA-64-5781 
"LIPI WILD-TYPE" "LIPI WILD-TYPE" "LIPI WILD-TYPE" "LIPI WILD-TYPE" 
    TCGA-64-5815     TCGA-67-6217     TCGA-73-4659     TCGA-73-4662 
"LIPI WILD-TYPE" "LIPI WILD-TYPE" "LIPI WILD-TYPE" "LIPI WILD-TYPE" 
    TCGA-73-4666     TCGA-73-4668     TCGA-73-4670     TCGA-73-4675 
"LIPI WILD-TYPE" "LIPI WILD-TYPE" "LIPI WILD-TYPE" "LIPI WILD-TYPE" 
    TCGA-73-4676     TCGA-73-4677     TCGA-75-5122     TCGA-75-5125 
"LIPI WILD-TYPE" "LIPI WILD-TYPE" "LIPI WILD-TYPE" "LIPI WILD-TYPE" 
    TCGA-75-5126     TCGA-75-5146     TCGA-75-6206     TCGA-75-6207 
"LIPI WILD-TYPE" "LIPI WILD-TYPE" "LIPI WILD-TYPE" "LIPI WILD-TYPE" 
    TCGA-80-5611     TCGA-91-6828     TCGA-91-6829     TCGA-91-6835 
"LIPI WILD-TYPE" "LIPI WILD-TYPE" "LIPI WILD-TYPE" "LIPI WILD-TYPE" 
D188V13, multiclass
                                             clus
vv                                            LIPI MUTATED LIPI WILD-TYPE
  CURRENT REFORMED SMOKER FOR < OR = 15 YEARS            2             60
  CURRENT REFORMED SMOKER FOR > 15 YEARS                 1             45
  CURRENT SMOKER                                         4             24
  LIFELONG NON-SMOKER                                    0             24
D188V14, continuous

Clustering(189) Variable = OR4D10 MUTATION ANALYSIS
D189V1, survival
                  sevent
clus2               0  1
  OR4D10 MUTATED    3  1
  OR4D10 WILD-TYPE 96 49
  OR4D10 MUTATED OR4D10 WILD-TYPE 
               4              145 
  OR4D10 MUTATED OR4D10 WILD-TYPE 
               1               49 
$`OR4D10 MUTATED`
TCGA-05-4396 TCGA-05-4430 TCGA-50-5066 TCGA-91-6836 
        9.96        25.02         9.76         0.36 

$`OR4D10 WILD-TYPE`
TCGA-05-4249 TCGA-05-4250 TCGA-05-4382 TCGA-05-4384 TCGA-05-4390 TCGA-05-4397 
       38.07         3.98        19.92        14.01        37.02        24.03 
TCGA-05-4398 TCGA-05-4402 TCGA-05-4405 TCGA-05-4415 TCGA-05-4417 TCGA-05-4418 
       47.05         8.02        20.05         2.96        14.93         8.98 
TCGA-05-4420 TCGA-05-4424 TCGA-05-4426 TCGA-05-4427 TCGA-05-4432 TCGA-05-4433 
       29.95        30.02        26.01        26.01        25.02        24.00 
TCGA-05-4434 TCGA-05-5420 TCGA-05-5423 TCGA-05-5425 TCGA-05-5429 TCGA-05-5715 
       15.02         1.02         4.96         2.96         0.99         2.04 
TCGA-35-3615 TCGA-35-4122 TCGA-35-4123 TCGA-35-5375 TCGA-38-4625 TCGA-38-4626 
        0.46         7.36         5.95         8.68        47.61        85.32 
TCGA-38-4627 TCGA-38-4628 TCGA-38-4629 TCGA-38-4630 TCGA-38-4631 TCGA-38-4632 
       37.71        49.02        28.37        35.28        11.64        44.61 
TCGA-38-6178 TCGA-44-2655 TCGA-44-2656 TCGA-44-2657 TCGA-44-2659 TCGA-44-2661 
        5.19        18.87        19.10        13.15        17.39         3.39 
TCGA-44-2662 TCGA-44-2665 TCGA-44-2666 TCGA-44-2668 TCGA-44-3396 TCGA-44-3398 
       15.78        13.15         3.19         8.09        10.22         8.32 
TCGA-44-3918 TCGA-44-3919 TCGA-44-4112 TCGA-44-5643 TCGA-44-5645 TCGA-44-6144 
        6.44         6.21         4.60         3.48         6.84         0.30 
TCGA-44-6145 TCGA-44-6146 TCGA-44-6147 TCGA-44-6148 TCGA-44-6774 TCGA-44-6775 
        3.35         9.93         7.76         3.12         5.42         2.70 
TCGA-44-6776 TCGA-44-6777 TCGA-44-6778 TCGA-44-6779 TCGA-49-4486 TCGA-49-4487 
       63.72        32.45        36.49        16.41        76.21        28.11 
TCGA-49-4488 TCGA-49-4490 TCGA-49-4494 TCGA-49-4501 TCGA-49-4505 TCGA-49-4506 
       28.57        12.66        35.54        46.72        14.07        32.84 
TCGA-49-4507 TCGA-49-4510 TCGA-49-4512 TCGA-49-4514 TCGA-49-6742 TCGA-49-6743 
        8.81        29.46        29.75        43.20        15.02        12.13 
TCGA-49-6744 TCGA-49-6745 TCGA-50-5044 TCGA-50-5045 TCGA-50-5049 TCGA-50-5051 
       12.99         4.93        20.48        71.47        48.82        14.96 
TCGA-50-5055 TCGA-50-5068 TCGA-50-5072 TCGA-50-5930 TCGA-50-5931 TCGA-50-5932 
       25.81        49.28         8.05         9.27         8.78        35.87 
TCGA-50-5933 TCGA-50-5935 TCGA-50-5936 TCGA-50-5939 TCGA-50-5941 TCGA-50-5942 
       77.88        21.47         8.45        15.12         9.37         4.44 
TCGA-50-5944 TCGA-50-5946 TCGA-50-6590 TCGA-50-6591 TCGA-50-6592 TCGA-50-6593 
       12.26        11.47        42.31         3.88        25.51        11.05 
TCGA-50-6594 TCGA-50-6595 TCGA-50-6597 TCGA-55-1592 TCGA-55-1594 TCGA-55-1595 
       12.16         6.21        33.37        23.05        38.73        48.62 
TCGA-55-1596 TCGA-55-5899 TCGA-55-6543 TCGA-55-6642 TCGA-55-6712 TCGA-64-1676 
       45.17         2.86         0.07        32.61         0.79        56.81 
TCGA-64-1677 TCGA-64-1678 TCGA-64-1680 TCGA-64-5774 TCGA-64-5775 TCGA-64-5778 
       20.65        39.09        37.02        83.84         0.10        30.44 
TCGA-64-5779 TCGA-64-5781 TCGA-64-5815 TCGA-67-3770 TCGA-67-3771 TCGA-67-3772 
       16.67        39.52         7.33         0.99         1.97         0.59 
TCGA-67-3773 TCGA-67-3774 TCGA-67-6215 TCGA-67-6216 TCGA-67-6217 TCGA-71-6725 
        2.04         0.59         0.89         0.69        13.87         2.01 
TCGA-73-4658 TCGA-73-4659 TCGA-73-4662 TCGA-73-4666 TCGA-73-4668 TCGA-73-4670 
       52.57        23.38        29.95        20.28        15.35         0.46 
TCGA-73-4675 TCGA-73-4676 TCGA-73-4677 TCGA-91-6828 TCGA-91-6829 TCGA-91-6831 
        1.32         4.01         1.25         1.22        41.33         1.28 
TCGA-91-6835 
        1.15 

  OR4D10 MUTATED OR4D10 WILD-TYPE 
            0.36             0.07 
  OR4D10 MUTATED OR4D10 WILD-TYPE 
           25.02            85.32 
  OR4D10 MUTATED OR4D10 WILD-TYPE 
            9.86            14.01 
[1] "0.4 - 25.0 (9.9)"  "0.1 - 85.3 (14.0)"
      TCGA-05-4249       TCGA-05-4250       TCGA-05-4382       TCGA-05-4384 
"OR4D10 WILD-TYPE" "OR4D10 WILD-TYPE" "OR4D10 WILD-TYPE" "OR4D10 WILD-TYPE" 
      TCGA-05-4390       TCGA-05-4396       TCGA-05-4397       TCGA-05-4398 
"OR4D10 WILD-TYPE"   "OR4D10 MUTATED" "OR4D10 WILD-TYPE" "OR4D10 WILD-TYPE" 
      TCGA-05-4402       TCGA-05-4405       TCGA-05-4415       TCGA-05-4417 
"OR4D10 WILD-TYPE" "OR4D10 WILD-TYPE" "OR4D10 WILD-TYPE" "OR4D10 WILD-TYPE" 
      TCGA-05-4418       TCGA-05-4420       TCGA-05-4424       TCGA-05-4426 
"OR4D10 WILD-TYPE" "OR4D10 WILD-TYPE" "OR4D10 WILD-TYPE" "OR4D10 WILD-TYPE" 
      TCGA-05-4427       TCGA-05-4430       TCGA-05-4432       TCGA-05-4433 
"OR4D10 WILD-TYPE"   "OR4D10 MUTATED" "OR4D10 WILD-TYPE" "OR4D10 WILD-TYPE" 
      TCGA-05-4434       TCGA-05-5420       TCGA-05-5423       TCGA-05-5425 
"OR4D10 WILD-TYPE" "OR4D10 WILD-TYPE" "OR4D10 WILD-TYPE" "OR4D10 WILD-TYPE" 
      TCGA-05-5429       TCGA-05-5715       TCGA-35-3615       TCGA-35-4122 
"OR4D10 WILD-TYPE" "OR4D10 WILD-TYPE" "OR4D10 WILD-TYPE" "OR4D10 WILD-TYPE" 
      TCGA-35-4123       TCGA-35-5375       TCGA-38-4625       TCGA-38-4626 
"OR4D10 WILD-TYPE" "OR4D10 WILD-TYPE" "OR4D10 WILD-TYPE" "OR4D10 WILD-TYPE" 
      TCGA-38-4627       TCGA-38-4628       TCGA-38-4629       TCGA-38-4630 
"OR4D10 WILD-TYPE" "OR4D10 WILD-TYPE" "OR4D10 WILD-TYPE" "OR4D10 WILD-TYPE" 
      TCGA-38-4631       TCGA-38-4632       TCGA-38-6178       TCGA-44-2655 
"OR4D10 WILD-TYPE" "OR4D10 WILD-TYPE" "OR4D10 WILD-TYPE" "OR4D10 WILD-TYPE" 
      TCGA-44-2656       TCGA-44-2657       TCGA-44-2659       TCGA-44-2661 
"OR4D10 WILD-TYPE" "OR4D10 WILD-TYPE" "OR4D10 WILD-TYPE" "OR4D10 WILD-TYPE" 
      TCGA-44-2662       TCGA-44-2665       TCGA-44-2666       TCGA-44-2668 
"OR4D10 WILD-TYPE" "OR4D10 WILD-TYPE" "OR4D10 WILD-TYPE" "OR4D10 WILD-TYPE" 
      TCGA-44-3396       TCGA-44-3398       TCGA-44-3918       TCGA-44-3919 
"OR4D10 WILD-TYPE" "OR4D10 WILD-TYPE" "OR4D10 WILD-TYPE" "OR4D10 WILD-TYPE" 
      TCGA-44-4112       TCGA-44-5643       TCGA-44-5645       TCGA-44-6144 
"OR4D10 WILD-TYPE" "OR4D10 WILD-TYPE" "OR4D10 WILD-TYPE" "OR4D10 WILD-TYPE" 
      TCGA-44-6145       TCGA-44-6146       TCGA-44-6147       TCGA-44-6148 
"OR4D10 WILD-TYPE" "OR4D10 WILD-TYPE" "OR4D10 WILD-TYPE" "OR4D10 WILD-TYPE" 
      TCGA-44-6774       TCGA-44-6775       TCGA-44-6776       TCGA-44-6777 
"OR4D10 WILD-TYPE" "OR4D10 WILD-TYPE" "OR4D10 WILD-TYPE" "OR4D10 WILD-TYPE" 
      TCGA-44-6778       TCGA-44-6779       TCGA-49-4486       TCGA-49-4487 
"OR4D10 WILD-TYPE" "OR4D10 WILD-TYPE" "OR4D10 WILD-TYPE" "OR4D10 WILD-TYPE" 
      TCGA-49-4488       TCGA-49-4490       TCGA-49-4494       TCGA-49-4501 
"OR4D10 WILD-TYPE" "OR4D10 WILD-TYPE" "OR4D10 WILD-TYPE" "OR4D10 WILD-TYPE" 
      TCGA-49-4505       TCGA-49-4506       TCGA-49-4507       TCGA-49-4510 
"OR4D10 WILD-TYPE" "OR4D10 WILD-TYPE" "OR4D10 WILD-TYPE" "OR4D10 WILD-TYPE" 
      TCGA-49-4512       TCGA-49-4514       TCGA-49-6742       TCGA-49-6743 
"OR4D10 WILD-TYPE" "OR4D10 WILD-TYPE" "OR4D10 WILD-TYPE" "OR4D10 WILD-TYPE" 
      TCGA-49-6744       TCGA-49-6745       TCGA-50-5044       TCGA-50-5045 
"OR4D10 WILD-TYPE" "OR4D10 WILD-TYPE" "OR4D10 WILD-TYPE" "OR4D10 WILD-TYPE" 
      TCGA-50-5049       TCGA-50-5051       TCGA-50-5055       TCGA-50-5066 
"OR4D10 WILD-TYPE" "OR4D10 WILD-TYPE" "OR4D10 WILD-TYPE"   "OR4D10 MUTATED" 
      TCGA-50-5068       TCGA-50-5072       TCGA-50-5930       TCGA-50-5931 
"OR4D10 WILD-TYPE" "OR4D10 WILD-TYPE" "OR4D10 WILD-TYPE" "OR4D10 WILD-TYPE" 
      TCGA-50-5932       TCGA-50-5933       TCGA-50-5935       TCGA-50-5936 
"OR4D10 WILD-TYPE" "OR4D10 WILD-TYPE" "OR4D10 WILD-TYPE" "OR4D10 WILD-TYPE" 
      TCGA-50-5939       TCGA-50-5941       TCGA-50-5942       TCGA-50-5944 
"OR4D10 WILD-TYPE" "OR4D10 WILD-TYPE" "OR4D10 WILD-TYPE" "OR4D10 WILD-TYPE" 
      TCGA-50-5946       TCGA-50-6590       TCGA-50-6591       TCGA-50-6592 
"OR4D10 WILD-TYPE" "OR4D10 WILD-TYPE" "OR4D10 WILD-TYPE" "OR4D10 WILD-TYPE" 
      TCGA-50-6593       TCGA-50-6594       TCGA-50-6595       TCGA-50-6597 
"OR4D10 WILD-TYPE" "OR4D10 WILD-TYPE" "OR4D10 WILD-TYPE" "OR4D10 WILD-TYPE" 
      TCGA-55-1592       TCGA-55-1594       TCGA-55-1595       TCGA-55-1596 
"OR4D10 WILD-TYPE" "OR4D10 WILD-TYPE" "OR4D10 WILD-TYPE" "OR4D10 WILD-TYPE" 
      TCGA-55-5899       TCGA-55-6543       TCGA-55-6642       TCGA-55-6712 
"OR4D10 WILD-TYPE" "OR4D10 WILD-TYPE" "OR4D10 WILD-TYPE" "OR4D10 WILD-TYPE" 
      TCGA-64-1676       TCGA-64-1677       TCGA-64-1678       TCGA-64-1680 
"OR4D10 WILD-TYPE" "OR4D10 WILD-TYPE" "OR4D10 WILD-TYPE" "OR4D10 WILD-TYPE" 
      TCGA-64-5774       TCGA-64-5775       TCGA-64-5778       TCGA-64-5779 
"OR4D10 WILD-TYPE" "OR4D10 WILD-TYPE" "OR4D10 WILD-TYPE" "OR4D10 WILD-TYPE" 
      TCGA-64-5781       TCGA-64-5815       TCGA-67-3770       TCGA-67-3771 
"OR4D10 WILD-TYPE" "OR4D10 WILD-TYPE" "OR4D10 WILD-TYPE" "OR4D10 WILD-TYPE" 
      TCGA-67-3772       TCGA-67-3773       TCGA-67-3774       TCGA-67-6215 
"OR4D10 WILD-TYPE" "OR4D10 WILD-TYPE" "OR4D10 WILD-TYPE" "OR4D10 WILD-TYPE" 
      TCGA-67-6216       TCGA-67-6217       TCGA-71-6725       TCGA-73-4658 
"OR4D10 WILD-TYPE" "OR4D10 WILD-TYPE" "OR4D10 WILD-TYPE" "OR4D10 WILD-TYPE" 
      TCGA-73-4659       TCGA-73-4662       TCGA-73-4666       TCGA-73-4668 
"OR4D10 WILD-TYPE" "OR4D10 WILD-TYPE" "OR4D10 WILD-TYPE" "OR4D10 WILD-TYPE" 
      TCGA-73-4670       TCGA-73-4675       TCGA-73-4676       TCGA-73-4677 
"OR4D10 WILD-TYPE" "OR4D10 WILD-TYPE" "OR4D10 WILD-TYPE" "OR4D10 WILD-TYPE" 
      TCGA-91-6828       TCGA-91-6829       TCGA-91-6831       TCGA-91-6835 
"OR4D10 WILD-TYPE" "OR4D10 WILD-TYPE" "OR4D10 WILD-TYPE" "OR4D10 WILD-TYPE" 
      TCGA-91-6836 
  "OR4D10 MUTATED" 
      TCGA-05-4249       TCGA-05-4250       TCGA-05-4382       TCGA-05-4384 
"OR4D10 WILD-TYPE" "OR4D10 WILD-TYPE" "OR4D10 WILD-TYPE" "OR4D10 WILD-TYPE" 
      TCGA-05-4390       TCGA-05-4396       TCGA-05-4397       TCGA-05-4398 
"OR4D10 WILD-TYPE"   "OR4D10 MUTATED" "OR4D10 WILD-TYPE" "OR4D10 WILD-TYPE" 
      TCGA-05-4402       TCGA-05-4405       TCGA-05-4415       TCGA-05-4417 
"OR4D10 WILD-TYPE" "OR4D10 WILD-TYPE" "OR4D10 WILD-TYPE" "OR4D10 WILD-TYPE" 
      TCGA-05-4418       TCGA-05-4420       TCGA-05-4424       TCGA-05-4426 
"OR4D10 WILD-TYPE" "OR4D10 WILD-TYPE" "OR4D10 WILD-TYPE" "OR4D10 WILD-TYPE" 
      TCGA-05-4427       TCGA-05-4430       TCGA-05-4432       TCGA-05-4433 
"OR4D10 WILD-TYPE"   "OR4D10 MUTATED" "OR4D10 WILD-TYPE" "OR4D10 WILD-TYPE" 
      TCGA-05-4434       TCGA-05-5420       TCGA-05-5423       TCGA-05-5425 
"OR4D10 WILD-TYPE" "OR4D10 WILD-TYPE" "OR4D10 WILD-TYPE" "OR4D10 WILD-TYPE" 
      TCGA-05-5429       TCGA-05-5715       TCGA-35-3615       TCGA-35-4122 
"OR4D10 WILD-TYPE" "OR4D10 WILD-TYPE" "OR4D10 WILD-TYPE" "OR4D10 WILD-TYPE" 
      TCGA-35-4123       TCGA-35-5375       TCGA-38-4625       TCGA-38-4626 
"OR4D10 WILD-TYPE" "OR4D10 WILD-TYPE" "OR4D10 WILD-TYPE" "OR4D10 WILD-TYPE" 
      TCGA-38-4627       TCGA-38-4628       TCGA-38-4629       TCGA-38-4630 
"OR4D10 WILD-TYPE" "OR4D10 WILD-TYPE" "OR4D10 WILD-TYPE" "OR4D10 WILD-TYPE" 
      TCGA-38-4631       TCGA-38-4632       TCGA-38-6178       TCGA-44-2655 
"OR4D10 WILD-TYPE" "OR4D10 WILD-TYPE" "OR4D10 WILD-TYPE" "OR4D10 WILD-TYPE" 
      TCGA-44-2656       TCGA-44-2657       TCGA-44-2659       TCGA-44-2661 
"OR4D10 WILD-TYPE" "OR4D10 WILD-TYPE" "OR4D10 WILD-TYPE" "OR4D10 WILD-TYPE" 
      TCGA-44-2662       TCGA-44-2665       TCGA-44-2666       TCGA-44-2668 
"OR4D10 WILD-TYPE" "OR4D10 WILD-TYPE" "OR4D10 WILD-TYPE" "OR4D10 WILD-TYPE" 
      TCGA-44-3396       TCGA-44-3398       TCGA-44-3918       TCGA-44-3919 
"OR4D10 WILD-TYPE" "OR4D10 WILD-TYPE" "OR4D10 WILD-TYPE" "OR4D10 WILD-TYPE" 
      TCGA-44-4112       TCGA-44-5643       TCGA-44-5645       TCGA-44-6144 
"OR4D10 WILD-TYPE" "OR4D10 WILD-TYPE" "OR4D10 WILD-TYPE" "OR4D10 WILD-TYPE" 
      TCGA-44-6145       TCGA-44-6146       TCGA-44-6147       TCGA-44-6148 
"OR4D10 WILD-TYPE" "OR4D10 WILD-TYPE" "OR4D10 WILD-TYPE" "OR4D10 WILD-TYPE" 
      TCGA-44-6774       TCGA-44-6775       TCGA-44-6776       TCGA-44-6777 
"OR4D10 WILD-TYPE" "OR4D10 WILD-TYPE" "OR4D10 WILD-TYPE" "OR4D10 WILD-TYPE" 
      TCGA-44-6778       TCGA-44-6779       TCGA-49-4486       TCGA-49-4487 
"OR4D10 WILD-TYPE" "OR4D10 WILD-TYPE" "OR4D10 WILD-TYPE" "OR4D10 WILD-TYPE" 
      TCGA-49-4488       TCGA-49-4490       TCGA-49-4494       TCGA-49-4501 
"OR4D10 WILD-TYPE" "OR4D10 WILD-TYPE" "OR4D10 WILD-TYPE" "OR4D10 WILD-TYPE" 
      TCGA-49-4505       TCGA-49-4506       TCGA-49-4507       TCGA-49-4510 
"OR4D10 WILD-TYPE" "OR4D10 WILD-TYPE" "OR4D10 WILD-TYPE" "OR4D10 WILD-TYPE" 
      TCGA-49-4512       TCGA-49-4514       TCGA-49-6742       TCGA-49-6743 
"OR4D10 WILD-TYPE" "OR4D10 WILD-TYPE" "OR4D10 WILD-TYPE" "OR4D10 WILD-TYPE" 
      TCGA-49-6744       TCGA-49-6745       TCGA-50-5044       TCGA-50-5045 
"OR4D10 WILD-TYPE" "OR4D10 WILD-TYPE" "OR4D10 WILD-TYPE" "OR4D10 WILD-TYPE" 
      TCGA-50-5049       TCGA-50-5051       TCGA-50-5055       TCGA-50-5066 
"OR4D10 WILD-TYPE" "OR4D10 WILD-TYPE" "OR4D10 WILD-TYPE"   "OR4D10 MUTATED" 
      TCGA-50-5068       TCGA-50-5072       TCGA-50-5930       TCGA-50-5931 
"OR4D10 WILD-TYPE" "OR4D10 WILD-TYPE" "OR4D10 WILD-TYPE" "OR4D10 WILD-TYPE" 
      TCGA-50-5932       TCGA-50-5933       TCGA-50-5935       TCGA-50-5936 
"OR4D10 WILD-TYPE" "OR4D10 WILD-TYPE" "OR4D10 WILD-TYPE" "OR4D10 WILD-TYPE" 
      TCGA-50-5939       TCGA-50-5941       TCGA-50-5942       TCGA-50-5944 
"OR4D10 WILD-TYPE" "OR4D10 WILD-TYPE" "OR4D10 WILD-TYPE" "OR4D10 WILD-TYPE" 
      TCGA-50-5946       TCGA-50-6590       TCGA-50-6591       TCGA-50-6592 
"OR4D10 WILD-TYPE" "OR4D10 WILD-TYPE" "OR4D10 WILD-TYPE" "OR4D10 WILD-TYPE" 
      TCGA-50-6593       TCGA-50-6594       TCGA-50-6595       TCGA-50-6597 
"OR4D10 WILD-TYPE" "OR4D10 WILD-TYPE" "OR4D10 WILD-TYPE" "OR4D10 WILD-TYPE" 
      TCGA-55-1592       TCGA-55-1594       TCGA-55-1595       TCGA-55-1596 
"OR4D10 WILD-TYPE" "OR4D10 WILD-TYPE" "OR4D10 WILD-TYPE" "OR4D10 WILD-TYPE" 
      TCGA-55-5899       TCGA-55-6543       TCGA-55-6642       TCGA-55-6712 
"OR4D10 WILD-TYPE" "OR4D10 WILD-TYPE" "OR4D10 WILD-TYPE" "OR4D10 WILD-TYPE" 
      TCGA-64-1676       TCGA-64-1677       TCGA-64-1678       TCGA-64-1680 
"OR4D10 WILD-TYPE" "OR4D10 WILD-TYPE" "OR4D10 WILD-TYPE" "OR4D10 WILD-TYPE" 
      TCGA-64-5774       TCGA-64-5775       TCGA-64-5778       TCGA-64-5779 
"OR4D10 WILD-TYPE" "OR4D10 WILD-TYPE" "OR4D10 WILD-TYPE" "OR4D10 WILD-TYPE" 
      TCGA-64-5781       TCGA-64-5815       TCGA-67-3770       TCGA-67-3771 
"OR4D10 WILD-TYPE" "OR4D10 WILD-TYPE" "OR4D10 WILD-TYPE" "OR4D10 WILD-TYPE" 
      TCGA-67-3772       TCGA-67-3773       TCGA-67-3774       TCGA-67-6215 
"OR4D10 WILD-TYPE" "OR4D10 WILD-TYPE" "OR4D10 WILD-TYPE" "OR4D10 WILD-TYPE" 
      TCGA-67-6216       TCGA-67-6217       TCGA-71-6725       TCGA-73-4658 
"OR4D10 WILD-TYPE" "OR4D10 WILD-TYPE" "OR4D10 WILD-TYPE" "OR4D10 WILD-TYPE" 
      TCGA-73-4659       TCGA-73-4662       TCGA-73-4666       TCGA-73-4668 
"OR4D10 WILD-TYPE" "OR4D10 WILD-TYPE" "OR4D10 WILD-TYPE" "OR4D10 WILD-TYPE" 
      TCGA-73-4670       TCGA-73-4675       TCGA-73-4676       TCGA-73-4677 
"OR4D10 WILD-TYPE" "OR4D10 WILD-TYPE" "OR4D10 WILD-TYPE" "OR4D10 WILD-TYPE" 
      TCGA-91-6828       TCGA-91-6829       TCGA-91-6831       TCGA-91-6835 
"OR4D10 WILD-TYPE" "OR4D10 WILD-TYPE" "OR4D10 WILD-TYPE" "OR4D10 WILD-TYPE" 
      TCGA-91-6836 
  "OR4D10 MUTATED" 
      TCGA-05-4249       TCGA-05-4250       TCGA-05-4382       TCGA-05-4384 
"OR4D10 WILD-TYPE" "OR4D10 WILD-TYPE" "OR4D10 WILD-TYPE" "OR4D10 WILD-TYPE" 
      TCGA-05-4390       TCGA-05-4396       TCGA-05-4397       TCGA-05-4398 
"OR4D10 WILD-TYPE"   "OR4D10 MUTATED" "OR4D10 WILD-TYPE" "OR4D10 WILD-TYPE" 
      TCGA-05-4402       TCGA-05-4405       TCGA-05-4415       TCGA-05-4417 
"OR4D10 WILD-TYPE" "OR4D10 WILD-TYPE" "OR4D10 WILD-TYPE" "OR4D10 WILD-TYPE" 
      TCGA-05-4418       TCGA-05-4420       TCGA-05-4424       TCGA-05-4426 
"OR4D10 WILD-TYPE" "OR4D10 WILD-TYPE" "OR4D10 WILD-TYPE" "OR4D10 WILD-TYPE" 
      TCGA-05-4427       TCGA-05-4430       TCGA-05-4432       TCGA-05-4433 
"OR4D10 WILD-TYPE"   "OR4D10 MUTATED" "OR4D10 WILD-TYPE" "OR4D10 WILD-TYPE" 
      TCGA-05-4434       TCGA-05-5420       TCGA-05-5423       TCGA-05-5425 
"OR4D10 WILD-TYPE" "OR4D10 WILD-TYPE" "OR4D10 WILD-TYPE" "OR4D10 WILD-TYPE" 
      TCGA-05-5429       TCGA-05-5715       TCGA-35-3615       TCGA-35-4122 
"OR4D10 WILD-TYPE" "OR4D10 WILD-TYPE" "OR4D10 WILD-TYPE" "OR4D10 WILD-TYPE" 
      TCGA-35-4123       TCGA-35-5375       TCGA-38-4625       TCGA-38-4626 
"OR4D10 WILD-TYPE" "OR4D10 WILD-TYPE" "OR4D10 WILD-TYPE" "OR4D10 WILD-TYPE" 
      TCGA-38-4627       TCGA-38-4628       TCGA-38-4629       TCGA-38-4630 
"OR4D10 WILD-TYPE" "OR4D10 WILD-TYPE" "OR4D10 WILD-TYPE" "OR4D10 WILD-TYPE" 
      TCGA-38-4631       TCGA-38-4632       TCGA-38-6178       TCGA-44-2655 
"OR4D10 WILD-TYPE" "OR4D10 WILD-TYPE" "OR4D10 WILD-TYPE" "OR4D10 WILD-TYPE" 
      TCGA-44-2656       TCGA-44-2657       TCGA-44-2659       TCGA-44-2661 
"OR4D10 WILD-TYPE" "OR4D10 WILD-TYPE" "OR4D10 WILD-TYPE" "OR4D10 WILD-TYPE" 
      TCGA-44-2662       TCGA-44-2665       TCGA-44-2666       TCGA-44-2668 
"OR4D10 WILD-TYPE" "OR4D10 WILD-TYPE" "OR4D10 WILD-TYPE" "OR4D10 WILD-TYPE" 
      TCGA-44-3396       TCGA-44-3398       TCGA-44-3918       TCGA-44-3919 
"OR4D10 WILD-TYPE" "OR4D10 WILD-TYPE" "OR4D10 WILD-TYPE" "OR4D10 WILD-TYPE" 
      TCGA-44-4112       TCGA-44-5643       TCGA-44-5645       TCGA-44-6144 
"OR4D10 WILD-TYPE" "OR4D10 WILD-TYPE" "OR4D10 WILD-TYPE" "OR4D10 WILD-TYPE" 
      TCGA-44-6145       TCGA-44-6146       TCGA-44-6147       TCGA-44-6148 
"OR4D10 WILD-TYPE" "OR4D10 WILD-TYPE" "OR4D10 WILD-TYPE" "OR4D10 WILD-TYPE" 
      TCGA-44-6774       TCGA-44-6775       TCGA-44-6776       TCGA-44-6777 
"OR4D10 WILD-TYPE" "OR4D10 WILD-TYPE" "OR4D10 WILD-TYPE" "OR4D10 WILD-TYPE" 
      TCGA-44-6778       TCGA-44-6779       TCGA-49-4486       TCGA-49-4487 
"OR4D10 WILD-TYPE" "OR4D10 WILD-TYPE" "OR4D10 WILD-TYPE" "OR4D10 WILD-TYPE" 
      TCGA-49-4488       TCGA-49-4490       TCGA-49-4494       TCGA-49-4501 
"OR4D10 WILD-TYPE" "OR4D10 WILD-TYPE" "OR4D10 WILD-TYPE" "OR4D10 WILD-TYPE" 
      TCGA-49-4505       TCGA-49-4506       TCGA-49-4507       TCGA-49-4510 
"OR4D10 WILD-TYPE" "OR4D10 WILD-TYPE" "OR4D10 WILD-TYPE" "OR4D10 WILD-TYPE" 
      TCGA-49-4512       TCGA-49-4514       TCGA-49-6742       TCGA-49-6743 
"OR4D10 WILD-TYPE" "OR4D10 WILD-TYPE" "OR4D10 WILD-TYPE" "OR4D10 WILD-TYPE" 
      TCGA-49-6744       TCGA-49-6745       TCGA-50-5044       TCGA-50-5045 
"OR4D10 WILD-TYPE" "OR4D10 WILD-TYPE" "OR4D10 WILD-TYPE" "OR4D10 WILD-TYPE" 
      TCGA-50-5049       TCGA-50-5051       TCGA-50-5055       TCGA-50-5066 
"OR4D10 WILD-TYPE" "OR4D10 WILD-TYPE" "OR4D10 WILD-TYPE"   "OR4D10 MUTATED" 
      TCGA-50-5068       TCGA-50-5072       TCGA-50-5930       TCGA-50-5931 
"OR4D10 WILD-TYPE" "OR4D10 WILD-TYPE" "OR4D10 WILD-TYPE" "OR4D10 WILD-TYPE" 
      TCGA-50-5932       TCGA-50-5933       TCGA-50-5935       TCGA-50-5936 
"OR4D10 WILD-TYPE" "OR4D10 WILD-TYPE" "OR4D10 WILD-TYPE" "OR4D10 WILD-TYPE" 
      TCGA-50-5939       TCGA-50-5941       TCGA-50-5942       TCGA-50-5944 
"OR4D10 WILD-TYPE" "OR4D10 WILD-TYPE" "OR4D10 WILD-TYPE" "OR4D10 WILD-TYPE" 
      TCGA-50-5946       TCGA-50-6590       TCGA-50-6591       TCGA-50-6592 
"OR4D10 WILD-TYPE" "OR4D10 WILD-TYPE" "OR4D10 WILD-TYPE" "OR4D10 WILD-TYPE" 
      TCGA-50-6593       TCGA-50-6594       TCGA-50-6595       TCGA-50-6597 
"OR4D10 WILD-TYPE" "OR4D10 WILD-TYPE" "OR4D10 WILD-TYPE" "OR4D10 WILD-TYPE" 
      TCGA-55-1592       TCGA-55-1594       TCGA-55-1595       TCGA-55-1596 
"OR4D10 WILD-TYPE" "OR4D10 WILD-TYPE" "OR4D10 WILD-TYPE" "OR4D10 WILD-TYPE" 
      TCGA-55-5899       TCGA-55-6543       TCGA-55-6642       TCGA-55-6712 
"OR4D10 WILD-TYPE" "OR4D10 WILD-TYPE" "OR4D10 WILD-TYPE" "OR4D10 WILD-TYPE" 
      TCGA-64-1676       TCGA-64-1677       TCGA-64-1678       TCGA-64-1680 
"OR4D10 WILD-TYPE" "OR4D10 WILD-TYPE" "OR4D10 WILD-TYPE" "OR4D10 WILD-TYPE" 
      TCGA-64-5774       TCGA-64-5775       TCGA-64-5778       TCGA-64-5779 
"OR4D10 WILD-TYPE" "OR4D10 WILD-TYPE" "OR4D10 WILD-TYPE" "OR4D10 WILD-TYPE" 
      TCGA-64-5781       TCGA-64-5815       TCGA-67-3770       TCGA-67-3771 
"OR4D10 WILD-TYPE" "OR4D10 WILD-TYPE" "OR4D10 WILD-TYPE" "OR4D10 WILD-TYPE" 
      TCGA-67-3772       TCGA-67-3773       TCGA-67-3774       TCGA-67-6215 
"OR4D10 WILD-TYPE" "OR4D10 WILD-TYPE" "OR4D10 WILD-TYPE" "OR4D10 WILD-TYPE" 
      TCGA-67-6216       TCGA-67-6217       TCGA-71-6725       TCGA-73-4658 
"OR4D10 WILD-TYPE" "OR4D10 WILD-TYPE" "OR4D10 WILD-TYPE" "OR4D10 WILD-TYPE" 
      TCGA-73-4659       TCGA-73-4662       TCGA-73-4666       TCGA-73-4668 
"OR4D10 WILD-TYPE" "OR4D10 WILD-TYPE" "OR4D10 WILD-TYPE" "OR4D10 WILD-TYPE" 
      TCGA-73-4670       TCGA-73-4675       TCGA-73-4676       TCGA-73-4677 
"OR4D10 WILD-TYPE" "OR4D10 WILD-TYPE" "OR4D10 WILD-TYPE" "OR4D10 WILD-TYPE" 
      TCGA-91-6828       TCGA-91-6829       TCGA-91-6831       TCGA-91-6835 
"OR4D10 WILD-TYPE" "OR4D10 WILD-TYPE" "OR4D10 WILD-TYPE" "OR4D10 WILD-TYPE" 
      TCGA-91-6836 
  "OR4D10 MUTATED" 
[1] "hr=" "1.7"
D189V2, continuous
D189V3, binary
[1] "tbl2"
                  cls
clus               [,1] [,2]
  OR4D10 MUTATED      2    3
  OR4D10 WILD-TYPE   91   76
        clus
vv       OR4D10 MUTATED OR4D10 WILD-TYPE
  FEMALE              2               91
  MALE                3               76
D189V4, continuous
D189V5, multiclass
D189V6, multiclass
    clus
vv   OR4D10 MUTATED OR4D10 WILD-TYPE
  T1              0               41
  T2              4              104
  T3              0               14
  T4              1                7
D189V7, multiclass
       clus
vv      OR4D10 MUTATED OR4D10 WILD-TYPE
  N0                 4               91
  N1                 1               36
  N2+N3              0               35
D189V8, multiclass
    clus
vv   OR4D10 MUTATED OR4D10 WILD-TYPE
  M0              4              133
  M1              0                9
  MX              1               21
D189V9, multiclass
     clus
vv    OR4D10 MUTATED OR4D10 WILD-TYPE
  I                4               84
  II               0               33
  III              1               38
  IV               0                9
D189V10, binary
[1] "tbl2"
                  cls
clus               [,1] [,2]
  OR4D10 MUTATED      0    5
  OR4D10 WILD-TYPE   16  151
     clus
vv    OR4D10 MUTATED OR4D10 WILD-TYPE
  NO               0               16
  YES              5              151
D189V11, continuous
D189V12, continuous
[1] "Remove cluster labels:" "OR4D10 MUTATED"        
clus
  OR4D10 MUTATED OR4D10 WILD-TYPE 
               2               80 
      TCGA-05-4384       TCGA-05-4390       TCGA-05-4403       TCGA-05-4405 
"OR4D10 WILD-TYPE" "OR4D10 WILD-TYPE" "OR4D10 WILD-TYPE" "OR4D10 WILD-TYPE" 
      TCGA-05-4415       TCGA-05-4417       TCGA-05-4424       TCGA-05-4427 
"OR4D10 WILD-TYPE" "OR4D10 WILD-TYPE" "OR4D10 WILD-TYPE" "OR4D10 WILD-TYPE" 
      TCGA-05-4433       TCGA-05-5420       TCGA-05-5423       TCGA-05-5425 
"OR4D10 WILD-TYPE" "OR4D10 WILD-TYPE" "OR4D10 WILD-TYPE" "OR4D10 WILD-TYPE" 
      TCGA-05-5428       TCGA-35-4122       TCGA-35-4123       TCGA-35-5375 
"OR4D10 WILD-TYPE" "OR4D10 WILD-TYPE" "OR4D10 WILD-TYPE" "OR4D10 WILD-TYPE" 
      TCGA-38-4629       TCGA-38-4632       TCGA-44-2655       TCGA-44-2656 
"OR4D10 WILD-TYPE" "OR4D10 WILD-TYPE" "OR4D10 WILD-TYPE" "OR4D10 WILD-TYPE" 
      TCGA-44-2657       TCGA-44-2659       TCGA-44-2662       TCGA-44-2668 
"OR4D10 WILD-TYPE" "OR4D10 WILD-TYPE" "OR4D10 WILD-TYPE" "OR4D10 WILD-TYPE" 
      TCGA-44-3398       TCGA-44-3918       TCGA-44-4112       TCGA-44-5645 
"OR4D10 WILD-TYPE" "OR4D10 WILD-TYPE" "OR4D10 WILD-TYPE" "OR4D10 WILD-TYPE" 
      TCGA-44-6145       TCGA-44-6146       TCGA-44-6147       TCGA-44-6148 
"OR4D10 WILD-TYPE" "OR4D10 WILD-TYPE" "OR4D10 WILD-TYPE" "OR4D10 WILD-TYPE" 
      TCGA-44-6775       TCGA-44-6776       TCGA-44-6777       TCGA-44-6778 
"OR4D10 WILD-TYPE" "OR4D10 WILD-TYPE" "OR4D10 WILD-TYPE" "OR4D10 WILD-TYPE" 
      TCGA-44-6779       TCGA-49-4486       TCGA-49-4488       TCGA-49-4494 
"OR4D10 WILD-TYPE" "OR4D10 WILD-TYPE" "OR4D10 WILD-TYPE" "OR4D10 WILD-TYPE" 
      TCGA-49-4505       TCGA-49-4507       TCGA-50-5051       TCGA-50-5072 
"OR4D10 WILD-TYPE" "OR4D10 WILD-TYPE" "OR4D10 WILD-TYPE" "OR4D10 WILD-TYPE" 
      TCGA-50-5939       TCGA-50-5942       TCGA-50-5946       TCGA-50-6590 
"OR4D10 WILD-TYPE" "OR4D10 WILD-TYPE" "OR4D10 WILD-TYPE" "OR4D10 WILD-TYPE" 
      TCGA-50-6594       TCGA-50-6595       TCGA-55-1592       TCGA-55-1595 
"OR4D10 WILD-TYPE" "OR4D10 WILD-TYPE" "OR4D10 WILD-TYPE" "OR4D10 WILD-TYPE" 
      TCGA-55-6543       TCGA-55-6712       TCGA-64-1678       TCGA-64-1680 
"OR4D10 WILD-TYPE" "OR4D10 WILD-TYPE" "OR4D10 WILD-TYPE" "OR4D10 WILD-TYPE" 
      TCGA-64-5774       TCGA-64-5778       TCGA-64-5779       TCGA-64-5781 
"OR4D10 WILD-TYPE" "OR4D10 WILD-TYPE" "OR4D10 WILD-TYPE" "OR4D10 WILD-TYPE" 
      TCGA-64-5815       TCGA-67-6217       TCGA-73-4659       TCGA-73-4662 
"OR4D10 WILD-TYPE" "OR4D10 WILD-TYPE" "OR4D10 WILD-TYPE" "OR4D10 WILD-TYPE" 
      TCGA-73-4666       TCGA-73-4668       TCGA-73-4670       TCGA-73-4675 
"OR4D10 WILD-TYPE" "OR4D10 WILD-TYPE" "OR4D10 WILD-TYPE" "OR4D10 WILD-TYPE" 
      TCGA-73-4676       TCGA-73-4677       TCGA-75-5122       TCGA-75-5125 
"OR4D10 WILD-TYPE" "OR4D10 WILD-TYPE" "OR4D10 WILD-TYPE" "OR4D10 WILD-TYPE" 
      TCGA-75-5126       TCGA-75-5146       TCGA-75-6206       TCGA-75-6207 
"OR4D10 WILD-TYPE" "OR4D10 WILD-TYPE" "OR4D10 WILD-TYPE" "OR4D10 WILD-TYPE" 
      TCGA-80-5611       TCGA-91-6828       TCGA-91-6829       TCGA-91-6835 
"OR4D10 WILD-TYPE" "OR4D10 WILD-TYPE" "OR4D10 WILD-TYPE" "OR4D10 WILD-TYPE" 
D189V13, multiclass
                                             clus
vv                                            OR4D10 MUTATED OR4D10 WILD-TYPE
  CURRENT REFORMED SMOKER FOR < OR = 15 YEARS              2               60
  CURRENT REFORMED SMOKER FOR > 15 YEARS                   1               45
  CURRENT SMOKER                                           1               27
  LIFELONG NON-SMOKER                                      1               23
D189V14, continuous

Clustering(190) Variable = OLFM3 MUTATION ANALYSIS
D190V1, survival
                 sevent
clus2              0  1
  OLFM3 MUTATED    3  4
  OLFM3 WILD-TYPE 96 46
  OLFM3 MUTATED OLFM3 WILD-TYPE 
              7             142 
  OLFM3 MUTATED OLFM3 WILD-TYPE 
              4              46 
$`OLFM3 MUTATED`
TCGA-05-4396 TCGA-05-4397 TCGA-05-4427 TCGA-50-5045 TCGA-50-5049 TCGA-55-1592 
        9.96        24.03        26.01        71.47        48.82        23.05 
TCGA-73-4666 
       20.28 

$`OLFM3 WILD-TYPE`
TCGA-05-4249 TCGA-05-4250 TCGA-05-4382 TCGA-05-4384 TCGA-05-4390 TCGA-05-4398 
       38.07         3.98        19.92        14.01        37.02        47.05 
TCGA-05-4402 TCGA-05-4405 TCGA-05-4415 TCGA-05-4417 TCGA-05-4418 TCGA-05-4420 
        8.02        20.05         2.96        14.93         8.98        29.95 
TCGA-05-4424 TCGA-05-4426 TCGA-05-4430 TCGA-05-4432 TCGA-05-4433 TCGA-05-4434 
       30.02        26.01        25.02        25.02        24.00        15.02 
TCGA-05-5420 TCGA-05-5423 TCGA-05-5425 TCGA-05-5429 TCGA-05-5715 TCGA-35-3615 
        1.02         4.96         2.96         0.99         2.04         0.46 
TCGA-35-4122 TCGA-35-4123 TCGA-35-5375 TCGA-38-4625 TCGA-38-4626 TCGA-38-4627 
        7.36         5.95         8.68        47.61        85.32        37.71 
TCGA-38-4628 TCGA-38-4629 TCGA-38-4630 TCGA-38-4631 TCGA-38-4632 TCGA-38-6178 
       49.02        28.37        35.28        11.64        44.61         5.19 
TCGA-44-2655 TCGA-44-2656 TCGA-44-2657 TCGA-44-2659 TCGA-44-2661 TCGA-44-2662 
       18.87        19.10        13.15        17.39         3.39        15.78 
TCGA-44-2665 TCGA-44-2666 TCGA-44-2668 TCGA-44-3396 TCGA-44-3398 TCGA-44-3918 
       13.15         3.19         8.09        10.22         8.32         6.44 
TCGA-44-3919 TCGA-44-4112 TCGA-44-5643 TCGA-44-5645 TCGA-44-6144 TCGA-44-6145 
        6.21         4.60         3.48         6.84         0.30         3.35 
TCGA-44-6146 TCGA-44-6147 TCGA-44-6148 TCGA-44-6774 TCGA-44-6775 TCGA-44-6776 
        9.93         7.76         3.12         5.42         2.70        63.72 
TCGA-44-6777 TCGA-44-6778 TCGA-44-6779 TCGA-49-4486 TCGA-49-4487 TCGA-49-4488 
       32.45        36.49        16.41        76.21        28.11        28.57 
TCGA-49-4490 TCGA-49-4494 TCGA-49-4501 TCGA-49-4505 TCGA-49-4506 TCGA-49-4507 
       12.66        35.54        46.72        14.07        32.84         8.81 
TCGA-49-4510 TCGA-49-4512 TCGA-49-4514 TCGA-49-6742 TCGA-49-6743 TCGA-49-6744 
       29.46        29.75        43.20        15.02        12.13        12.99 
TCGA-49-6745 TCGA-50-5044 TCGA-50-5051 TCGA-50-5055 TCGA-50-5066 TCGA-50-5068 
        4.93        20.48        14.96        25.81         9.76        49.28 
TCGA-50-5072 TCGA-50-5930 TCGA-50-5931 TCGA-50-5932 TCGA-50-5933 TCGA-50-5935 
        8.05         9.27         8.78        35.87        77.88        21.47 
TCGA-50-5936 TCGA-50-5939 TCGA-50-5941 TCGA-50-5942 TCGA-50-5944 TCGA-50-5946 
        8.45        15.12         9.37         4.44        12.26        11.47 
TCGA-50-6590 TCGA-50-6591 TCGA-50-6592 TCGA-50-6593 TCGA-50-6594 TCGA-50-6595 
       42.31         3.88        25.51        11.05        12.16         6.21 
TCGA-50-6597 TCGA-55-1594 TCGA-55-1595 TCGA-55-1596 TCGA-55-5899 TCGA-55-6543 
       33.37        38.73        48.62        45.17         2.86         0.07 
TCGA-55-6642 TCGA-55-6712 TCGA-64-1676 TCGA-64-1677 TCGA-64-1678 TCGA-64-1680 
       32.61         0.79        56.81        20.65        39.09        37.02 
TCGA-64-5774 TCGA-64-5775 TCGA-64-5778 TCGA-64-5779 TCGA-64-5781 TCGA-64-5815 
       83.84         0.10        30.44        16.67        39.52         7.33 
TCGA-67-3770 TCGA-67-3771 TCGA-67-3772 TCGA-67-3773 TCGA-67-3774 TCGA-67-6215 
        0.99         1.97         0.59         2.04         0.59         0.89 
TCGA-67-6216 TCGA-67-6217 TCGA-71-6725 TCGA-73-4658 TCGA-73-4659 TCGA-73-4662 
        0.69        13.87         2.01        52.57        23.38        29.95 
TCGA-73-4668 TCGA-73-4670 TCGA-73-4675 TCGA-73-4676 TCGA-73-4677 TCGA-91-6828 
       15.35         0.46         1.32         4.01         1.25         1.22 
TCGA-91-6829 TCGA-91-6831 TCGA-91-6835 TCGA-91-6836 
       41.33         1.28         1.15         0.36 

  OLFM3 MUTATED OLFM3 WILD-TYPE 
           9.96            0.07 
  OLFM3 MUTATED OLFM3 WILD-TYPE 
          71.47           85.32 
  OLFM3 MUTATED OLFM3 WILD-TYPE 
          24.03           13.07 
[1] "10.0 - 71.5 (24.0)" "0.1 - 85.3 (13.1)" 
     TCGA-05-4249      TCGA-05-4250      TCGA-05-4382      TCGA-05-4384 
"OLFM3 WILD-TYPE" "OLFM3 WILD-TYPE" "OLFM3 WILD-TYPE" "OLFM3 WILD-TYPE" 
     TCGA-05-4390      TCGA-05-4396      TCGA-05-4397      TCGA-05-4398 
"OLFM3 WILD-TYPE"   "OLFM3 MUTATED"   "OLFM3 MUTATED" "OLFM3 WILD-TYPE" 
     TCGA-05-4402      TCGA-05-4405      TCGA-05-4415      TCGA-05-4417 
"OLFM3 WILD-TYPE" "OLFM3 WILD-TYPE" "OLFM3 WILD-TYPE" "OLFM3 WILD-TYPE" 
     TCGA-05-4418      TCGA-05-4420      TCGA-05-4424      TCGA-05-4426 
"OLFM3 WILD-TYPE" "OLFM3 WILD-TYPE" "OLFM3 WILD-TYPE" "OLFM3 WILD-TYPE" 
     TCGA-05-4427      TCGA-05-4430      TCGA-05-4432      TCGA-05-4433 
  "OLFM3 MUTATED" "OLFM3 WILD-TYPE" "OLFM3 WILD-TYPE" "OLFM3 WILD-TYPE" 
     TCGA-05-4434      TCGA-05-5420      TCGA-05-5423      TCGA-05-5425 
"OLFM3 WILD-TYPE" "OLFM3 WILD-TYPE" "OLFM3 WILD-TYPE" "OLFM3 WILD-TYPE" 
     TCGA-05-5429      TCGA-05-5715      TCGA-35-3615      TCGA-35-4122 
"OLFM3 WILD-TYPE" "OLFM3 WILD-TYPE" "OLFM3 WILD-TYPE" "OLFM3 WILD-TYPE" 
     TCGA-35-4123      TCGA-35-5375      TCGA-38-4625      TCGA-38-4626 
"OLFM3 WILD-TYPE" "OLFM3 WILD-TYPE" "OLFM3 WILD-TYPE" "OLFM3 WILD-TYPE" 
     TCGA-38-4627      TCGA-38-4628      TCGA-38-4629      TCGA-38-4630 
"OLFM3 WILD-TYPE" "OLFM3 WILD-TYPE" "OLFM3 WILD-TYPE" "OLFM3 WILD-TYPE" 
     TCGA-38-4631      TCGA-38-4632      TCGA-38-6178      TCGA-44-2655 
"OLFM3 WILD-TYPE" "OLFM3 WILD-TYPE" "OLFM3 WILD-TYPE" "OLFM3 WILD-TYPE" 
     TCGA-44-2656      TCGA-44-2657      TCGA-44-2659      TCGA-44-2661 
"OLFM3 WILD-TYPE" "OLFM3 WILD-TYPE" "OLFM3 WILD-TYPE" "OLFM3 WILD-TYPE" 
     TCGA-44-2662      TCGA-44-2665      TCGA-44-2666      TCGA-44-2668 
"OLFM3 WILD-TYPE" "OLFM3 WILD-TYPE" "OLFM3 WILD-TYPE" "OLFM3 WILD-TYPE" 
     TCGA-44-3396      TCGA-44-3398      TCGA-44-3918      TCGA-44-3919 
"OLFM3 WILD-TYPE" "OLFM3 WILD-TYPE" "OLFM3 WILD-TYPE" "OLFM3 WILD-TYPE" 
     TCGA-44-4112      TCGA-44-5643      TCGA-44-5645      TCGA-44-6144 
"OLFM3 WILD-TYPE" "OLFM3 WILD-TYPE" "OLFM3 WILD-TYPE" "OLFM3 WILD-TYPE" 
     TCGA-44-6145      TCGA-44-6146      TCGA-44-6147      TCGA-44-6148 
"OLFM3 WILD-TYPE" "OLFM3 WILD-TYPE" "OLFM3 WILD-TYPE" "OLFM3 WILD-TYPE" 
     TCGA-44-6774      TCGA-44-6775      TCGA-44-6776      TCGA-44-6777 
"OLFM3 WILD-TYPE" "OLFM3 WILD-TYPE" "OLFM3 WILD-TYPE" "OLFM3 WILD-TYPE" 
     TCGA-44-6778      TCGA-44-6779      TCGA-49-4486      TCGA-49-4487 
"OLFM3 WILD-TYPE" "OLFM3 WILD-TYPE" "OLFM3 WILD-TYPE" "OLFM3 WILD-TYPE" 
     TCGA-49-4488      TCGA-49-4490      TCGA-49-4494      TCGA-49-4501 
"OLFM3 WILD-TYPE" "OLFM3 WILD-TYPE" "OLFM3 WILD-TYPE" "OLFM3 WILD-TYPE" 
     TCGA-49-4505      TCGA-49-4506      TCGA-49-4507      TCGA-49-4510 
"OLFM3 WILD-TYPE" "OLFM3 WILD-TYPE" "OLFM3 WILD-TYPE" "OLFM3 WILD-TYPE" 
     TCGA-49-4512      TCGA-49-4514      TCGA-49-6742      TCGA-49-6743 
"OLFM3 WILD-TYPE" "OLFM3 WILD-TYPE" "OLFM3 WILD-TYPE" "OLFM3 WILD-TYPE" 
     TCGA-49-6744      TCGA-49-6745      TCGA-50-5044      TCGA-50-5045 
"OLFM3 WILD-TYPE" "OLFM3 WILD-TYPE" "OLFM3 WILD-TYPE"   "OLFM3 MUTATED" 
     TCGA-50-5049      TCGA-50-5051      TCGA-50-5055      TCGA-50-5066 
  "OLFM3 MUTATED" "OLFM3 WILD-TYPE" "OLFM3 WILD-TYPE" "OLFM3 WILD-TYPE" 
     TCGA-50-5068      TCGA-50-5072      TCGA-50-5930      TCGA-50-5931 
"OLFM3 WILD-TYPE" "OLFM3 WILD-TYPE" "OLFM3 WILD-TYPE" "OLFM3 WILD-TYPE" 
     TCGA-50-5932      TCGA-50-5933      TCGA-50-5935      TCGA-50-5936 
"OLFM3 WILD-TYPE" "OLFM3 WILD-TYPE" "OLFM3 WILD-TYPE" "OLFM3 WILD-TYPE" 
     TCGA-50-5939      TCGA-50-5941      TCGA-50-5942      TCGA-50-5944 
"OLFM3 WILD-TYPE" "OLFM3 WILD-TYPE" "OLFM3 WILD-TYPE" "OLFM3 WILD-TYPE" 
     TCGA-50-5946      TCGA-50-6590      TCGA-50-6591      TCGA-50-6592 
"OLFM3 WILD-TYPE" "OLFM3 WILD-TYPE" "OLFM3 WILD-TYPE" "OLFM3 WILD-TYPE" 
     TCGA-50-6593      TCGA-50-6594      TCGA-50-6595      TCGA-50-6597 
"OLFM3 WILD-TYPE" "OLFM3 WILD-TYPE" "OLFM3 WILD-TYPE" "OLFM3 WILD-TYPE" 
     TCGA-55-1592      TCGA-55-1594      TCGA-55-1595      TCGA-55-1596 
  "OLFM3 MUTATED" "OLFM3 WILD-TYPE" "OLFM3 WILD-TYPE" "OLFM3 WILD-TYPE" 
     TCGA-55-5899      TCGA-55-6543      TCGA-55-6642      TCGA-55-6712 
"OLFM3 WILD-TYPE" "OLFM3 WILD-TYPE" "OLFM3 WILD-TYPE" "OLFM3 WILD-TYPE" 
     TCGA-64-1676      TCGA-64-1677      TCGA-64-1678      TCGA-64-1680 
"OLFM3 WILD-TYPE" "OLFM3 WILD-TYPE" "OLFM3 WILD-TYPE" "OLFM3 WILD-TYPE" 
     TCGA-64-5774      TCGA-64-5775      TCGA-64-5778      TCGA-64-5779 
"OLFM3 WILD-TYPE" "OLFM3 WILD-TYPE" "OLFM3 WILD-TYPE" "OLFM3 WILD-TYPE" 
     TCGA-64-5781      TCGA-64-5815      TCGA-67-3770      TCGA-67-3771 
"OLFM3 WILD-TYPE" "OLFM3 WILD-TYPE" "OLFM3 WILD-TYPE" "OLFM3 WILD-TYPE" 
     TCGA-67-3772      TCGA-67-3773      TCGA-67-3774      TCGA-67-6215 
"OLFM3 WILD-TYPE" "OLFM3 WILD-TYPE" "OLFM3 WILD-TYPE" "OLFM3 WILD-TYPE" 
     TCGA-67-6216      TCGA-67-6217      TCGA-71-6725      TCGA-73-4658 
"OLFM3 WILD-TYPE" "OLFM3 WILD-TYPE" "OLFM3 WILD-TYPE" "OLFM3 WILD-TYPE" 
     TCGA-73-4659      TCGA-73-4662      TCGA-73-4666      TCGA-73-4668 
"OLFM3 WILD-TYPE" "OLFM3 WILD-TYPE"   "OLFM3 MUTATED" "OLFM3 WILD-TYPE" 
     TCGA-73-4670      TCGA-73-4675      TCGA-73-4676      TCGA-73-4677 
"OLFM3 WILD-TYPE" "OLFM3 WILD-TYPE" "OLFM3 WILD-TYPE" "OLFM3 WILD-TYPE" 
     TCGA-91-6828      TCGA-91-6829      TCGA-91-6831      TCGA-91-6835 
"OLFM3 WILD-TYPE" "OLFM3 WILD-TYPE" "OLFM3 WILD-TYPE" "OLFM3 WILD-TYPE" 
     TCGA-91-6836 
"OLFM3 WILD-TYPE" 
     TCGA-05-4249      TCGA-05-4250      TCGA-05-4382      TCGA-05-4384 
"OLFM3 WILD-TYPE" "OLFM3 WILD-TYPE" "OLFM3 WILD-TYPE" "OLFM3 WILD-TYPE" 
     TCGA-05-4390      TCGA-05-4396      TCGA-05-4397      TCGA-05-4398 
"OLFM3 WILD-TYPE"   "OLFM3 MUTATED"   "OLFM3 MUTATED" "OLFM3 WILD-TYPE" 
     TCGA-05-4402      TCGA-05-4405      TCGA-05-4415      TCGA-05-4417 
"OLFM3 WILD-TYPE" "OLFM3 WILD-TYPE" "OLFM3 WILD-TYPE" "OLFM3 WILD-TYPE" 
     TCGA-05-4418      TCGA-05-4420      TCGA-05-4424      TCGA-05-4426 
"OLFM3 WILD-TYPE" "OLFM3 WILD-TYPE" "OLFM3 WILD-TYPE" "OLFM3 WILD-TYPE" 
     TCGA-05-4427      TCGA-05-4430      TCGA-05-4432      TCGA-05-4433 
  "OLFM3 MUTATED" "OLFM3 WILD-TYPE" "OLFM3 WILD-TYPE" "OLFM3 WILD-TYPE" 
     TCGA-05-4434      TCGA-05-5420      TCGA-05-5423      TCGA-05-5425 
"OLFM3 WILD-TYPE" "OLFM3 WILD-TYPE" "OLFM3 WILD-TYPE" "OLFM3 WILD-TYPE" 
     TCGA-05-5429      TCGA-05-5715      TCGA-35-3615      TCGA-35-4122 
"OLFM3 WILD-TYPE" "OLFM3 WILD-TYPE" "OLFM3 WILD-TYPE" "OLFM3 WILD-TYPE" 
     TCGA-35-4123      TCGA-35-5375      TCGA-38-4625      TCGA-38-4626 
"OLFM3 WILD-TYPE" "OLFM3 WILD-TYPE" "OLFM3 WILD-TYPE" "OLFM3 WILD-TYPE" 
     TCGA-38-4627      TCGA-38-4628      TCGA-38-4629      TCGA-38-4630 
"OLFM3 WILD-TYPE" "OLFM3 WILD-TYPE" "OLFM3 WILD-TYPE" "OLFM3 WILD-TYPE" 
     TCGA-38-4631      TCGA-38-4632      TCGA-38-6178      TCGA-44-2655 
"OLFM3 WILD-TYPE" "OLFM3 WILD-TYPE" "OLFM3 WILD-TYPE" "OLFM3 WILD-TYPE" 
     TCGA-44-2656      TCGA-44-2657      TCGA-44-2659      TCGA-44-2661 
"OLFM3 WILD-TYPE" "OLFM3 WILD-TYPE" "OLFM3 WILD-TYPE" "OLFM3 WILD-TYPE" 
     TCGA-44-2662      TCGA-44-2665      TCGA-44-2666      TCGA-44-2668 
"OLFM3 WILD-TYPE" "OLFM3 WILD-TYPE" "OLFM3 WILD-TYPE" "OLFM3 WILD-TYPE" 
     TCGA-44-3396      TCGA-44-3398      TCGA-44-3918      TCGA-44-3919 
"OLFM3 WILD-TYPE" "OLFM3 WILD-TYPE" "OLFM3 WILD-TYPE" "OLFM3 WILD-TYPE" 
     TCGA-44-4112      TCGA-44-5643      TCGA-44-5645      TCGA-44-6144 
"OLFM3 WILD-TYPE" "OLFM3 WILD-TYPE" "OLFM3 WILD-TYPE" "OLFM3 WILD-TYPE" 
     TCGA-44-6145      TCGA-44-6146      TCGA-44-6147      TCGA-44-6148 
"OLFM3 WILD-TYPE" "OLFM3 WILD-TYPE" "OLFM3 WILD-TYPE" "OLFM3 WILD-TYPE" 
     TCGA-44-6774      TCGA-44-6775      TCGA-44-6776      TCGA-44-6777 
"OLFM3 WILD-TYPE" "OLFM3 WILD-TYPE" "OLFM3 WILD-TYPE" "OLFM3 WILD-TYPE" 
     TCGA-44-6778      TCGA-44-6779      TCGA-49-4486      TCGA-49-4487 
"OLFM3 WILD-TYPE" "OLFM3 WILD-TYPE" "OLFM3 WILD-TYPE" "OLFM3 WILD-TYPE" 
     TCGA-49-4488      TCGA-49-4490      TCGA-49-4494      TCGA-49-4501 
"OLFM3 WILD-TYPE" "OLFM3 WILD-TYPE" "OLFM3 WILD-TYPE" "OLFM3 WILD-TYPE" 
     TCGA-49-4505      TCGA-49-4506      TCGA-49-4507      TCGA-49-4510 
"OLFM3 WILD-TYPE" "OLFM3 WILD-TYPE" "OLFM3 WILD-TYPE" "OLFM3 WILD-TYPE" 
     TCGA-49-4512      TCGA-49-4514      TCGA-49-6742      TCGA-49-6743 
"OLFM3 WILD-TYPE" "OLFM3 WILD-TYPE" "OLFM3 WILD-TYPE" "OLFM3 WILD-TYPE" 
     TCGA-49-6744      TCGA-49-6745      TCGA-50-5044      TCGA-50-5045 
"OLFM3 WILD-TYPE" "OLFM3 WILD-TYPE" "OLFM3 WILD-TYPE"   "OLFM3 MUTATED" 
     TCGA-50-5049      TCGA-50-5051      TCGA-50-5055      TCGA-50-5066 
  "OLFM3 MUTATED" "OLFM3 WILD-TYPE" "OLFM3 WILD-TYPE" "OLFM3 WILD-TYPE" 
     TCGA-50-5068      TCGA-50-5072      TCGA-50-5930      TCGA-50-5931 
"OLFM3 WILD-TYPE" "OLFM3 WILD-TYPE" "OLFM3 WILD-TYPE" "OLFM3 WILD-TYPE" 
     TCGA-50-5932      TCGA-50-5933      TCGA-50-5935      TCGA-50-5936 
"OLFM3 WILD-TYPE" "OLFM3 WILD-TYPE" "OLFM3 WILD-TYPE" "OLFM3 WILD-TYPE" 
     TCGA-50-5939      TCGA-50-5941      TCGA-50-5942      TCGA-50-5944 
"OLFM3 WILD-TYPE" "OLFM3 WILD-TYPE" "OLFM3 WILD-TYPE" "OLFM3 WILD-TYPE" 
     TCGA-50-5946      TCGA-50-6590      TCGA-50-6591      TCGA-50-6592 
"OLFM3 WILD-TYPE" "OLFM3 WILD-TYPE" "OLFM3 WILD-TYPE" "OLFM3 WILD-TYPE" 
     TCGA-50-6593      TCGA-50-6594      TCGA-50-6595      TCGA-50-6597 
"OLFM3 WILD-TYPE" "OLFM3 WILD-TYPE" "OLFM3 WILD-TYPE" "OLFM3 WILD-TYPE" 
     TCGA-55-1592      TCGA-55-1594      TCGA-55-1595      TCGA-55-1596 
  "OLFM3 MUTATED" "OLFM3 WILD-TYPE" "OLFM3 WILD-TYPE" "OLFM3 WILD-TYPE" 
     TCGA-55-5899      TCGA-55-6543      TCGA-55-6642      TCGA-55-6712 
"OLFM3 WILD-TYPE" "OLFM3 WILD-TYPE" "OLFM3 WILD-TYPE" "OLFM3 WILD-TYPE" 
     TCGA-64-1676      TCGA-64-1677      TCGA-64-1678      TCGA-64-1680 
"OLFM3 WILD-TYPE" "OLFM3 WILD-TYPE" "OLFM3 WILD-TYPE" "OLFM3 WILD-TYPE" 
     TCGA-64-5774      TCGA-64-5775      TCGA-64-5778      TCGA-64-5779 
"OLFM3 WILD-TYPE" "OLFM3 WILD-TYPE" "OLFM3 WILD-TYPE" "OLFM3 WILD-TYPE" 
     TCGA-64-5781      TCGA-64-5815      TCGA-67-3770      TCGA-67-3771 
"OLFM3 WILD-TYPE" "OLFM3 WILD-TYPE" "OLFM3 WILD-TYPE" "OLFM3 WILD-TYPE" 
     TCGA-67-3772      TCGA-67-3773      TCGA-67-3774      TCGA-67-6215 
"OLFM3 WILD-TYPE" "OLFM3 WILD-TYPE" "OLFM3 WILD-TYPE" "OLFM3 WILD-TYPE" 
     TCGA-67-6216      TCGA-67-6217      TCGA-71-6725      TCGA-73-4658 
"OLFM3 WILD-TYPE" "OLFM3 WILD-TYPE" "OLFM3 WILD-TYPE" "OLFM3 WILD-TYPE" 
     TCGA-73-4659      TCGA-73-4662      TCGA-73-4666      TCGA-73-4668 
"OLFM3 WILD-TYPE" "OLFM3 WILD-TYPE"   "OLFM3 MUTATED" "OLFM3 WILD-TYPE" 
     TCGA-73-4670      TCGA-73-4675      TCGA-73-4676      TCGA-73-4677 
"OLFM3 WILD-TYPE" "OLFM3 WILD-TYPE" "OLFM3 WILD-TYPE" "OLFM3 WILD-TYPE" 
     TCGA-91-6828      TCGA-91-6829      TCGA-91-6831      TCGA-91-6835 
"OLFM3 WILD-TYPE" "OLFM3 WILD-TYPE" "OLFM3 WILD-TYPE" "OLFM3 WILD-TYPE" 
     TCGA-91-6836 
"OLFM3 WILD-TYPE" 
     TCGA-05-4249      TCGA-05-4250      TCGA-05-4382      TCGA-05-4384 
"OLFM3 WILD-TYPE" "OLFM3 WILD-TYPE" "OLFM3 WILD-TYPE" "OLFM3 WILD-TYPE" 
     TCGA-05-4390      TCGA-05-4396      TCGA-05-4397      TCGA-05-4398 
"OLFM3 WILD-TYPE"   "OLFM3 MUTATED"   "OLFM3 MUTATED" "OLFM3 WILD-TYPE" 
     TCGA-05-4402      TCGA-05-4405      TCGA-05-4415      TCGA-05-4417 
"OLFM3 WILD-TYPE" "OLFM3 WILD-TYPE" "OLFM3 WILD-TYPE" "OLFM3 WILD-TYPE" 
     TCGA-05-4418      TCGA-05-4420      TCGA-05-4424      TCGA-05-4426 
"OLFM3 WILD-TYPE" "OLFM3 WILD-TYPE" "OLFM3 WILD-TYPE" "OLFM3 WILD-TYPE" 
     TCGA-05-4427      TCGA-05-4430      TCGA-05-4432      TCGA-05-4433 
  "OLFM3 MUTATED" "OLFM3 WILD-TYPE" "OLFM3 WILD-TYPE" "OLFM3 WILD-TYPE" 
     TCGA-05-4434      TCGA-05-5420      TCGA-05-5423      TCGA-05-5425 
"OLFM3 WILD-TYPE" "OLFM3 WILD-TYPE" "OLFM3 WILD-TYPE" "OLFM3 WILD-TYPE" 
     TCGA-05-5429      TCGA-05-5715      TCGA-35-3615      TCGA-35-4122 
"OLFM3 WILD-TYPE" "OLFM3 WILD-TYPE" "OLFM3 WILD-TYPE" "OLFM3 WILD-TYPE" 
     TCGA-35-4123      TCGA-35-5375      TCGA-38-4625      TCGA-38-4626 
"OLFM3 WILD-TYPE" "OLFM3 WILD-TYPE" "OLFM3 WILD-TYPE" "OLFM3 WILD-TYPE" 
     TCGA-38-4627      TCGA-38-4628      TCGA-38-4629      TCGA-38-4630 
"OLFM3 WILD-TYPE" "OLFM3 WILD-TYPE" "OLFM3 WILD-TYPE" "OLFM3 WILD-TYPE" 
     TCGA-38-4631      TCGA-38-4632      TCGA-38-6178      TCGA-44-2655 
"OLFM3 WILD-TYPE" "OLFM3 WILD-TYPE" "OLFM3 WILD-TYPE" "OLFM3 WILD-TYPE" 
     TCGA-44-2656      TCGA-44-2657      TCGA-44-2659      TCGA-44-2661 
"OLFM3 WILD-TYPE" "OLFM3 WILD-TYPE" "OLFM3 WILD-TYPE" "OLFM3 WILD-TYPE" 
     TCGA-44-2662      TCGA-44-2665      TCGA-44-2666      TCGA-44-2668 
"OLFM3 WILD-TYPE" "OLFM3 WILD-TYPE" "OLFM3 WILD-TYPE" "OLFM3 WILD-TYPE" 
     TCGA-44-3396      TCGA-44-3398      TCGA-44-3918      TCGA-44-3919 
"OLFM3 WILD-TYPE" "OLFM3 WILD-TYPE" "OLFM3 WILD-TYPE" "OLFM3 WILD-TYPE" 
     TCGA-44-4112      TCGA-44-5643      TCGA-44-5645      TCGA-44-6144 
"OLFM3 WILD-TYPE" "OLFM3 WILD-TYPE" "OLFM3 WILD-TYPE" "OLFM3 WILD-TYPE" 
     TCGA-44-6145      TCGA-44-6146      TCGA-44-6147      TCGA-44-6148 
"OLFM3 WILD-TYPE" "OLFM3 WILD-TYPE" "OLFM3 WILD-TYPE" "OLFM3 WILD-TYPE" 
     TCGA-44-6774      TCGA-44-6775      TCGA-44-6776      TCGA-44-6777 
"OLFM3 WILD-TYPE" "OLFM3 WILD-TYPE" "OLFM3 WILD-TYPE" "OLFM3 WILD-TYPE" 
     TCGA-44-6778      TCGA-44-6779      TCGA-49-4486      TCGA-49-4487 
"OLFM3 WILD-TYPE" "OLFM3 WILD-TYPE" "OLFM3 WILD-TYPE" "OLFM3 WILD-TYPE" 
     TCGA-49-4488      TCGA-49-4490      TCGA-49-4494      TCGA-49-4501 
"OLFM3 WILD-TYPE" "OLFM3 WILD-TYPE" "OLFM3 WILD-TYPE" "OLFM3 WILD-TYPE" 
     TCGA-49-4505      TCGA-49-4506      TCGA-49-4507      TCGA-49-4510 
"OLFM3 WILD-TYPE" "OLFM3 WILD-TYPE" "OLFM3 WILD-TYPE" "OLFM3 WILD-TYPE" 
     TCGA-49-4512      TCGA-49-4514      TCGA-49-6742      TCGA-49-6743 
"OLFM3 WILD-TYPE" "OLFM3 WILD-TYPE" "OLFM3 WILD-TYPE" "OLFM3 WILD-TYPE" 
     TCGA-49-6744      TCGA-49-6745      TCGA-50-5044      TCGA-50-5045 
"OLFM3 WILD-TYPE" "OLFM3 WILD-TYPE" "OLFM3 WILD-TYPE"   "OLFM3 MUTATED" 
     TCGA-50-5049      TCGA-50-5051      TCGA-50-5055      TCGA-50-5066 
  "OLFM3 MUTATED" "OLFM3 WILD-TYPE" "OLFM3 WILD-TYPE" "OLFM3 WILD-TYPE" 
     TCGA-50-5068      TCGA-50-5072      TCGA-50-5930      TCGA-50-5931 
"OLFM3 WILD-TYPE" "OLFM3 WILD-TYPE" "OLFM3 WILD-TYPE" "OLFM3 WILD-TYPE" 
     TCGA-50-5932      TCGA-50-5933      TCGA-50-5935      TCGA-50-5936 
"OLFM3 WILD-TYPE" "OLFM3 WILD-TYPE" "OLFM3 WILD-TYPE" "OLFM3 WILD-TYPE" 
     TCGA-50-5939      TCGA-50-5941      TCGA-50-5942      TCGA-50-5944 
"OLFM3 WILD-TYPE" "OLFM3 WILD-TYPE" "OLFM3 WILD-TYPE" "OLFM3 WILD-TYPE" 
     TCGA-50-5946      TCGA-50-6590      TCGA-50-6591      TCGA-50-6592 
"OLFM3 WILD-TYPE" "OLFM3 WILD-TYPE" "OLFM3 WILD-TYPE" "OLFM3 WILD-TYPE" 
     TCGA-50-6593      TCGA-50-6594      TCGA-50-6595      TCGA-50-6597 
"OLFM3 WILD-TYPE" "OLFM3 WILD-TYPE" "OLFM3 WILD-TYPE" "OLFM3 WILD-TYPE" 
     TCGA-55-1592      TCGA-55-1594      TCGA-55-1595      TCGA-55-1596 
  "OLFM3 MUTATED" "OLFM3 WILD-TYPE" "OLFM3 WILD-TYPE" "OLFM3 WILD-TYPE" 
     TCGA-55-5899      TCGA-55-6543      TCGA-55-6642      TCGA-55-6712 
"OLFM3 WILD-TYPE" "OLFM3 WILD-TYPE" "OLFM3 WILD-TYPE" "OLFM3 WILD-TYPE" 
     TCGA-64-1676      TCGA-64-1677      TCGA-64-1678      TCGA-64-1680 
"OLFM3 WILD-TYPE" "OLFM3 WILD-TYPE" "OLFM3 WILD-TYPE" "OLFM3 WILD-TYPE" 
     TCGA-64-5774      TCGA-64-5775      TCGA-64-5778      TCGA-64-5779 
"OLFM3 WILD-TYPE" "OLFM3 WILD-TYPE" "OLFM3 WILD-TYPE" "OLFM3 WILD-TYPE" 
     TCGA-64-5781      TCGA-64-5815      TCGA-67-3770      TCGA-67-3771 
"OLFM3 WILD-TYPE" "OLFM3 WILD-TYPE" "OLFM3 WILD-TYPE" "OLFM3 WILD-TYPE" 
     TCGA-67-3772      TCGA-67-3773      TCGA-67-3774      TCGA-67-6215 
"OLFM3 WILD-TYPE" "OLFM3 WILD-TYPE" "OLFM3 WILD-TYPE" "OLFM3 WILD-TYPE" 
     TCGA-67-6216      TCGA-67-6217      TCGA-71-6725      TCGA-73-4658 
"OLFM3 WILD-TYPE" "OLFM3 WILD-TYPE" "OLFM3 WILD-TYPE" "OLFM3 WILD-TYPE" 
     TCGA-73-4659      TCGA-73-4662      TCGA-73-4666      TCGA-73-4668 
"OLFM3 WILD-TYPE" "OLFM3 WILD-TYPE"   "OLFM3 MUTATED" "OLFM3 WILD-TYPE" 
     TCGA-73-4670      TCGA-73-4675      TCGA-73-4676      TCGA-73-4677 
"OLFM3 WILD-TYPE" "OLFM3 WILD-TYPE" "OLFM3 WILD-TYPE" "OLFM3 WILD-TYPE" 
     TCGA-91-6828      TCGA-91-6829      TCGA-91-6831      TCGA-91-6835 
"OLFM3 WILD-TYPE" "OLFM3 WILD-TYPE" "OLFM3 WILD-TYPE" "OLFM3 WILD-TYPE" 
     TCGA-91-6836 
"OLFM3 WILD-TYPE" 
[1] "hr=" "1.1"
D190V2, continuous
D190V3, binary
[1] "tbl2"
                 cls
clus              [,1] [,2]
  OLFM3 MUTATED      3    4
  OLFM3 WILD-TYPE   90   75
        clus
vv       OLFM3 MUTATED OLFM3 WILD-TYPE
  FEMALE             3              90
  MALE               4              75
D190V4, continuous
[1] "Remove cluster labels:" "OLFM3 MUTATED"         
clus
  OLFM3 MUTATED OLFM3 WILD-TYPE 
              1              11 
     TCGA-35-4122      TCGA-35-4123      TCGA-35-5375      TCGA-64-1677 
"OLFM3 WILD-TYPE" "OLFM3 WILD-TYPE" "OLFM3 WILD-TYPE" "OLFM3 WILD-TYPE" 
     TCGA-64-5778      TCGA-71-6725      TCGA-73-4659      TCGA-73-4662 
"OLFM3 WILD-TYPE" "OLFM3 WILD-TYPE" "OLFM3 WILD-TYPE" "OLFM3 WILD-TYPE" 
     TCGA-73-4668      TCGA-73-4676      TCGA-75-5122 
"OLFM3 WILD-TYPE" "OLFM3 WILD-TYPE" "OLFM3 WILD-TYPE" 
D190V5, multiclass
D190V6, multiclass
    clus
vv   OLFM3 MUTATED OLFM3 WILD-TYPE
  T1             1              40
  T2             5             103
  T3             0              14
  T4             1               7
D190V7, multiclass
       clus
vv      OLFM3 MUTATED OLFM3 WILD-TYPE
  N0                3              92
  N1                4              33
  N2+N3             0              35
D190V8, multiclass
    clus
vv   OLFM3 MUTATED OLFM3 WILD-TYPE
  M0             6             131
  M1             1               8
  MX             0              22
D190V9, multiclass
     clus
vv    OLFM3 MUTATED OLFM3 WILD-TYPE
  I               3              85
  II              2              31
  III             1              38
  IV              1               8
D190V10, binary
[1] "tbl2"
                 cls
clus              [,1] [,2]
  OLFM3 MUTATED      3    4
  OLFM3 WILD-TYPE   13  152
     clus
vv    OLFM3 MUTATED OLFM3 WILD-TYPE
  NO              3              13
  YES             4             152
D190V11, continuous
D190V12, continuous
D190V13, multiclass
                                             clus
vv                                            OLFM3 MUTATED OLFM3 WILD-TYPE
  CURRENT REFORMED SMOKER FOR < OR = 15 YEARS             3              59
  CURRENT REFORMED SMOKER FOR > 15 YEARS                  1              45
  CURRENT SMOKER                                          1              27
  LIFELONG NON-SMOKER                                     0              24
D190V14, continuous

Clustering(191) Variable = SAGE1 MUTATION ANALYSIS
D191V1, survival
                 sevent
clus2              0  1
  SAGE1 MUTATED    8  2
  SAGE1 WILD-TYPE 91 48
  SAGE1 MUTATED SAGE1 WILD-TYPE 
             10             139 
  SAGE1 MUTATED SAGE1 WILD-TYPE 
              2              48 
$`SAGE1 MUTATED`
TCGA-05-4396 TCGA-05-5423 TCGA-38-4625 TCGA-44-2659 TCGA-44-5645 TCGA-44-6774 
        9.96         4.96        47.61        17.39         6.84         5.42 
TCGA-44-6775 TCGA-50-6590 TCGA-64-5781 TCGA-73-4676 
        2.70        42.31        39.52         4.01 

$`SAGE1 WILD-TYPE`
TCGA-05-4249 TCGA-05-4250 TCGA-05-4382 TCGA-05-4384 TCGA-05-4390 TCGA-05-4397 
       38.07         3.98        19.92        14.01        37.02        24.03 
TCGA-05-4398 TCGA-05-4402 TCGA-05-4405 TCGA-05-4415 TCGA-05-4417 TCGA-05-4418 
       47.05         8.02        20.05         2.96        14.93         8.98 
TCGA-05-4420 TCGA-05-4424 TCGA-05-4426 TCGA-05-4427 TCGA-05-4430 TCGA-05-4432 
       29.95        30.02        26.01        26.01        25.02        25.02 
TCGA-05-4433 TCGA-05-4434 TCGA-05-5420 TCGA-05-5425 TCGA-05-5429 TCGA-05-5715 
       24.00        15.02         1.02         2.96         0.99         2.04 
TCGA-35-3615 TCGA-35-4122 TCGA-35-4123 TCGA-35-5375 TCGA-38-4626 TCGA-38-4627 
        0.46         7.36         5.95         8.68        85.32        37.71 
TCGA-38-4628 TCGA-38-4629 TCGA-38-4630 TCGA-38-4631 TCGA-38-4632 TCGA-38-6178 
       49.02        28.37        35.28        11.64        44.61         5.19 
TCGA-44-2655 TCGA-44-2656 TCGA-44-2657 TCGA-44-2661 TCGA-44-2662 TCGA-44-2665 
       18.87        19.10        13.15         3.39        15.78        13.15 
TCGA-44-2666 TCGA-44-2668 TCGA-44-3396 TCGA-44-3398 TCGA-44-3918 TCGA-44-3919 
        3.19         8.09        10.22         8.32         6.44         6.21 
TCGA-44-4112 TCGA-44-5643 TCGA-44-6144 TCGA-44-6145 TCGA-44-6146 TCGA-44-6147 
        4.60         3.48         0.30         3.35         9.93         7.76 
TCGA-44-6148 TCGA-44-6776 TCGA-44-6777 TCGA-44-6778 TCGA-44-6779 TCGA-49-4486 
        3.12        63.72        32.45        36.49        16.41        76.21 
TCGA-49-4487 TCGA-49-4488 TCGA-49-4490 TCGA-49-4494 TCGA-49-4501 TCGA-49-4505 
       28.11        28.57        12.66        35.54        46.72        14.07 
TCGA-49-4506 TCGA-49-4507 TCGA-49-4510 TCGA-49-4512 TCGA-49-4514 TCGA-49-6742 
       32.84         8.81        29.46        29.75        43.20        15.02 
TCGA-49-6743 TCGA-49-6744 TCGA-49-6745 TCGA-50-5044 TCGA-50-5045 TCGA-50-5049 
       12.13        12.99         4.93        20.48        71.47        48.82 
TCGA-50-5051 TCGA-50-5055 TCGA-50-5066 TCGA-50-5068 TCGA-50-5072 TCGA-50-5930 
       14.96        25.81         9.76        49.28         8.05         9.27 
TCGA-50-5931 TCGA-50-5932 TCGA-50-5933 TCGA-50-5935 TCGA-50-5936 TCGA-50-5939 
        8.78        35.87        77.88        21.47         8.45        15.12 
TCGA-50-5941 TCGA-50-5942 TCGA-50-5944 TCGA-50-5946 TCGA-50-6591 TCGA-50-6592 
        9.37         4.44        12.26        11.47         3.88        25.51 
TCGA-50-6593 TCGA-50-6594 TCGA-50-6595 TCGA-50-6597 TCGA-55-1592 TCGA-55-1594 
       11.05        12.16         6.21        33.37        23.05        38.73 
TCGA-55-1595 TCGA-55-1596 TCGA-55-5899 TCGA-55-6543 TCGA-55-6642 TCGA-55-6712 
       48.62        45.17         2.86         0.07        32.61         0.79 
TCGA-64-1676 TCGA-64-1677 TCGA-64-1678 TCGA-64-1680 TCGA-64-5774 TCGA-64-5775 
       56.81        20.65        39.09        37.02        83.84         0.10 
TCGA-64-5778 TCGA-64-5779 TCGA-64-5815 TCGA-67-3770 TCGA-67-3771 TCGA-67-3772 
       30.44        16.67         7.33         0.99         1.97         0.59 
TCGA-67-3773 TCGA-67-3774 TCGA-67-6215 TCGA-67-6216 TCGA-67-6217 TCGA-71-6725 
        2.04         0.59         0.89         0.69        13.87         2.01 
TCGA-73-4658 TCGA-73-4659 TCGA-73-4662 TCGA-73-4666 TCGA-73-4668 TCGA-73-4670 
       52.57        23.38        29.95        20.28        15.35         0.46 
TCGA-73-4675 TCGA-73-4677 TCGA-91-6828 TCGA-91-6829 TCGA-91-6831 TCGA-91-6835 
        1.32         1.25         1.22        41.33         1.28         1.15 
TCGA-91-6836 
        0.36 

  SAGE1 MUTATED SAGE1 WILD-TYPE 
           2.70            0.07 
  SAGE1 MUTATED SAGE1 WILD-TYPE 
          47.61           85.32 
  SAGE1 MUTATED SAGE1 WILD-TYPE 
           8.40           14.01 
[1] "2.7 - 47.6 (8.4)"  "0.1 - 85.3 (14.0)"
     TCGA-05-4249      TCGA-05-4250      TCGA-05-4382      TCGA-05-4384 
"SAGE1 WILD-TYPE" "SAGE1 WILD-TYPE" "SAGE1 WILD-TYPE" "SAGE1 WILD-TYPE" 
     TCGA-05-4390      TCGA-05-4396      TCGA-05-4397      TCGA-05-4398 
"SAGE1 WILD-TYPE"   "SAGE1 MUTATED" "SAGE1 WILD-TYPE" "SAGE1 WILD-TYPE" 
     TCGA-05-4402      TCGA-05-4405      TCGA-05-4415      TCGA-05-4417 
"SAGE1 WILD-TYPE" "SAGE1 WILD-TYPE" "SAGE1 WILD-TYPE" "SAGE1 WILD-TYPE" 
     TCGA-05-4418      TCGA-05-4420      TCGA-05-4424      TCGA-05-4426 
"SAGE1 WILD-TYPE" "SAGE1 WILD-TYPE" "SAGE1 WILD-TYPE" "SAGE1 WILD-TYPE" 
     TCGA-05-4427      TCGA-05-4430      TCGA-05-4432      TCGA-05-4433 
"SAGE1 WILD-TYPE" "SAGE1 WILD-TYPE" "SAGE1 WILD-TYPE" "SAGE1 WILD-TYPE" 
     TCGA-05-4434      TCGA-05-5420      TCGA-05-5423      TCGA-05-5425 
"SAGE1 WILD-TYPE" "SAGE1 WILD-TYPE"   "SAGE1 MUTATED" "SAGE1 WILD-TYPE" 
     TCGA-05-5429      TCGA-05-5715      TCGA-35-3615      TCGA-35-4122 
"SAGE1 WILD-TYPE" "SAGE1 WILD-TYPE" "SAGE1 WILD-TYPE" "SAGE1 WILD-TYPE" 
     TCGA-35-4123      TCGA-35-5375      TCGA-38-4625      TCGA-38-4626 
"SAGE1 WILD-TYPE" "SAGE1 WILD-TYPE"   "SAGE1 MUTATED" "SAGE1 WILD-TYPE" 
     TCGA-38-4627      TCGA-38-4628      TCGA-38-4629      TCGA-38-4630 
"SAGE1 WILD-TYPE" "SAGE1 WILD-TYPE" "SAGE1 WILD-TYPE" "SAGE1 WILD-TYPE" 
     TCGA-38-4631      TCGA-38-4632      TCGA-38-6178      TCGA-44-2655 
"SAGE1 WILD-TYPE" "SAGE1 WILD-TYPE" "SAGE1 WILD-TYPE" "SAGE1 WILD-TYPE" 
     TCGA-44-2656      TCGA-44-2657      TCGA-44-2659      TCGA-44-2661 
"SAGE1 WILD-TYPE" "SAGE1 WILD-TYPE"   "SAGE1 MUTATED" "SAGE1 WILD-TYPE" 
     TCGA-44-2662      TCGA-44-2665      TCGA-44-2666      TCGA-44-2668 
"SAGE1 WILD-TYPE" "SAGE1 WILD-TYPE" "SAGE1 WILD-TYPE" "SAGE1 WILD-TYPE" 
     TCGA-44-3396      TCGA-44-3398      TCGA-44-3918      TCGA-44-3919 
"SAGE1 WILD-TYPE" "SAGE1 WILD-TYPE" "SAGE1 WILD-TYPE" "SAGE1 WILD-TYPE" 
     TCGA-44-4112      TCGA-44-5643      TCGA-44-5645      TCGA-44-6144 
"SAGE1 WILD-TYPE" "SAGE1 WILD-TYPE"   "SAGE1 MUTATED" "SAGE1 WILD-TYPE" 
     TCGA-44-6145      TCGA-44-6146      TCGA-44-6147      TCGA-44-6148 
"SAGE1 WILD-TYPE" "SAGE1 WILD-TYPE" "SAGE1 WILD-TYPE" "SAGE1 WILD-TYPE" 
     TCGA-44-6774      TCGA-44-6775      TCGA-44-6776      TCGA-44-6777 
  "SAGE1 MUTATED"   "SAGE1 MUTATED" "SAGE1 WILD-TYPE" "SAGE1 WILD-TYPE" 
     TCGA-44-6778      TCGA-44-6779      TCGA-49-4486      TCGA-49-4487 
"SAGE1 WILD-TYPE" "SAGE1 WILD-TYPE" "SAGE1 WILD-TYPE" "SAGE1 WILD-TYPE" 
     TCGA-49-4488      TCGA-49-4490      TCGA-49-4494      TCGA-49-4501 
"SAGE1 WILD-TYPE" "SAGE1 WILD-TYPE" "SAGE1 WILD-TYPE" "SAGE1 WILD-TYPE" 
     TCGA-49-4505      TCGA-49-4506      TCGA-49-4507      TCGA-49-4510 
"SAGE1 WILD-TYPE" "SAGE1 WILD-TYPE" "SAGE1 WILD-TYPE" "SAGE1 WILD-TYPE" 
     TCGA-49-4512      TCGA-49-4514      TCGA-49-6742      TCGA-49-6743 
"SAGE1 WILD-TYPE" "SAGE1 WILD-TYPE" "SAGE1 WILD-TYPE" "SAGE1 WILD-TYPE" 
     TCGA-49-6744      TCGA-49-6745      TCGA-50-5044      TCGA-50-5045 
"SAGE1 WILD-TYPE" "SAGE1 WILD-TYPE" "SAGE1 WILD-TYPE" "SAGE1 WILD-TYPE" 
     TCGA-50-5049      TCGA-50-5051      TCGA-50-5055      TCGA-50-5066 
"SAGE1 WILD-TYPE" "SAGE1 WILD-TYPE" "SAGE1 WILD-TYPE" "SAGE1 WILD-TYPE" 
     TCGA-50-5068      TCGA-50-5072      TCGA-50-5930      TCGA-50-5931 
"SAGE1 WILD-TYPE" "SAGE1 WILD-TYPE" "SAGE1 WILD-TYPE" "SAGE1 WILD-TYPE" 
     TCGA-50-5932      TCGA-50-5933      TCGA-50-5935      TCGA-50-5936 
"SAGE1 WILD-TYPE" "SAGE1 WILD-TYPE" "SAGE1 WILD-TYPE" "SAGE1 WILD-TYPE" 
     TCGA-50-5939      TCGA-50-5941      TCGA-50-5942      TCGA-50-5944 
"SAGE1 WILD-TYPE" "SAGE1 WILD-TYPE" "SAGE1 WILD-TYPE" "SAGE1 WILD-TYPE" 
     TCGA-50-5946      TCGA-50-6590      TCGA-50-6591      TCGA-50-6592 
"SAGE1 WILD-TYPE"   "SAGE1 MUTATED" "SAGE1 WILD-TYPE" "SAGE1 WILD-TYPE" 
     TCGA-50-6593      TCGA-50-6594      TCGA-50-6595      TCGA-50-6597 
"SAGE1 WILD-TYPE" "SAGE1 WILD-TYPE" "SAGE1 WILD-TYPE" "SAGE1 WILD-TYPE" 
     TCGA-55-1592      TCGA-55-1594      TCGA-55-1595      TCGA-55-1596 
"SAGE1 WILD-TYPE" "SAGE1 WILD-TYPE" "SAGE1 WILD-TYPE" "SAGE1 WILD-TYPE" 
     TCGA-55-5899      TCGA-55-6543      TCGA-55-6642      TCGA-55-6712 
"SAGE1 WILD-TYPE" "SAGE1 WILD-TYPE" "SAGE1 WILD-TYPE" "SAGE1 WILD-TYPE" 
     TCGA-64-1676      TCGA-64-1677      TCGA-64-1678      TCGA-64-1680 
"SAGE1 WILD-TYPE" "SAGE1 WILD-TYPE" "SAGE1 WILD-TYPE" "SAGE1 WILD-TYPE" 
     TCGA-64-5774      TCGA-64-5775      TCGA-64-5778      TCGA-64-5779 
"SAGE1 WILD-TYPE" "SAGE1 WILD-TYPE" "SAGE1 WILD-TYPE" "SAGE1 WILD-TYPE" 
     TCGA-64-5781      TCGA-64-5815      TCGA-67-3770      TCGA-67-3771 
  "SAGE1 MUTATED" "SAGE1 WILD-TYPE" "SAGE1 WILD-TYPE" "SAGE1 WILD-TYPE" 
     TCGA-67-3772      TCGA-67-3773      TCGA-67-3774      TCGA-67-6215 
"SAGE1 WILD-TYPE" "SAGE1 WILD-TYPE" "SAGE1 WILD-TYPE" "SAGE1 WILD-TYPE" 
     TCGA-67-6216      TCGA-67-6217      TCGA-71-6725      TCGA-73-4658 
"SAGE1 WILD-TYPE" "SAGE1 WILD-TYPE" "SAGE1 WILD-TYPE" "SAGE1 WILD-TYPE" 
     TCGA-73-4659      TCGA-73-4662      TCGA-73-4666      TCGA-73-4668 
"SAGE1 WILD-TYPE" "SAGE1 WILD-TYPE" "SAGE1 WILD-TYPE" "SAGE1 WILD-TYPE" 
     TCGA-73-4670      TCGA-73-4675      TCGA-73-4676      TCGA-73-4677 
"SAGE1 WILD-TYPE" "SAGE1 WILD-TYPE"   "SAGE1 MUTATED" "SAGE1 WILD-TYPE" 
     TCGA-91-6828      TCGA-91-6829      TCGA-91-6831      TCGA-91-6835 
"SAGE1 WILD-TYPE" "SAGE1 WILD-TYPE" "SAGE1 WILD-TYPE" "SAGE1 WILD-TYPE" 
     TCGA-91-6836 
"SAGE1 WILD-TYPE" 
     TCGA-05-4249      TCGA-05-4250      TCGA-05-4382      TCGA-05-4384 
"SAGE1 WILD-TYPE" "SAGE1 WILD-TYPE" "SAGE1 WILD-TYPE" "SAGE1 WILD-TYPE" 
     TCGA-05-4390      TCGA-05-4396      TCGA-05-4397      TCGA-05-4398 
"SAGE1 WILD-TYPE"   "SAGE1 MUTATED" "SAGE1 WILD-TYPE" "SAGE1 WILD-TYPE" 
     TCGA-05-4402      TCGA-05-4405      TCGA-05-4415      TCGA-05-4417 
"SAGE1 WILD-TYPE" "SAGE1 WILD-TYPE" "SAGE1 WILD-TYPE" "SAGE1 WILD-TYPE" 
     TCGA-05-4418      TCGA-05-4420      TCGA-05-4424      TCGA-05-4426 
"SAGE1 WILD-TYPE" "SAGE1 WILD-TYPE" "SAGE1 WILD-TYPE" "SAGE1 WILD-TYPE" 
     TCGA-05-4427      TCGA-05-4430      TCGA-05-4432      TCGA-05-4433 
"SAGE1 WILD-TYPE" "SAGE1 WILD-TYPE" "SAGE1 WILD-TYPE" "SAGE1 WILD-TYPE" 
     TCGA-05-4434      TCGA-05-5420      TCGA-05-5423      TCGA-05-5425 
"SAGE1 WILD-TYPE" "SAGE1 WILD-TYPE"   "SAGE1 MUTATED" "SAGE1 WILD-TYPE" 
     TCGA-05-5429      TCGA-05-5715      TCGA-35-3615      TCGA-35-4122 
"SAGE1 WILD-TYPE" "SAGE1 WILD-TYPE" "SAGE1 WILD-TYPE" "SAGE1 WILD-TYPE" 
     TCGA-35-4123      TCGA-35-5375      TCGA-38-4625      TCGA-38-4626 
"SAGE1 WILD-TYPE" "SAGE1 WILD-TYPE"   "SAGE1 MUTATED" "SAGE1 WILD-TYPE" 
     TCGA-38-4627      TCGA-38-4628      TCGA-38-4629      TCGA-38-4630 
"SAGE1 WILD-TYPE" "SAGE1 WILD-TYPE" "SAGE1 WILD-TYPE" "SAGE1 WILD-TYPE" 
     TCGA-38-4631      TCGA-38-4632      TCGA-38-6178      TCGA-44-2655 
"SAGE1 WILD-TYPE" "SAGE1 WILD-TYPE" "SAGE1 WILD-TYPE" "SAGE1 WILD-TYPE" 
     TCGA-44-2656      TCGA-44-2657      TCGA-44-2659      TCGA-44-2661 
"SAGE1 WILD-TYPE" "SAGE1 WILD-TYPE"   "SAGE1 MUTATED" "SAGE1 WILD-TYPE" 
     TCGA-44-2662      TCGA-44-2665      TCGA-44-2666      TCGA-44-2668 
"SAGE1 WILD-TYPE" "SAGE1 WILD-TYPE" "SAGE1 WILD-TYPE" "SAGE1 WILD-TYPE" 
     TCGA-44-3396      TCGA-44-3398      TCGA-44-3918      TCGA-44-3919 
"SAGE1 WILD-TYPE" "SAGE1 WILD-TYPE" "SAGE1 WILD-TYPE" "SAGE1 WILD-TYPE" 
     TCGA-44-4112      TCGA-44-5643      TCGA-44-5645      TCGA-44-6144 
"SAGE1 WILD-TYPE" "SAGE1 WILD-TYPE"   "SAGE1 MUTATED" "SAGE1 WILD-TYPE" 
     TCGA-44-6145      TCGA-44-6146      TCGA-44-6147      TCGA-44-6148 
"SAGE1 WILD-TYPE" "SAGE1 WILD-TYPE" "SAGE1 WILD-TYPE" "SAGE1 WILD-TYPE" 
     TCGA-44-6774      TCGA-44-6775      TCGA-44-6776      TCGA-44-6777 
  "SAGE1 MUTATED"   "SAGE1 MUTATED" "SAGE1 WILD-TYPE" "SAGE1 WILD-TYPE" 
     TCGA-44-6778      TCGA-44-6779      TCGA-49-4486      TCGA-49-4487 
"SAGE1 WILD-TYPE" "SAGE1 WILD-TYPE" "SAGE1 WILD-TYPE" "SAGE1 WILD-TYPE" 
     TCGA-49-4488      TCGA-49-4490      TCGA-49-4494      TCGA-49-4501 
"SAGE1 WILD-TYPE" "SAGE1 WILD-TYPE" "SAGE1 WILD-TYPE" "SAGE1 WILD-TYPE" 
     TCGA-49-4505      TCGA-49-4506      TCGA-49-4507      TCGA-49-4510 
"SAGE1 WILD-TYPE" "SAGE1 WILD-TYPE" "SAGE1 WILD-TYPE" "SAGE1 WILD-TYPE" 
     TCGA-49-4512      TCGA-49-4514      TCGA-49-6742      TCGA-49-6743 
"SAGE1 WILD-TYPE" "SAGE1 WILD-TYPE" "SAGE1 WILD-TYPE" "SAGE1 WILD-TYPE" 
     TCGA-49-6744      TCGA-49-6745      TCGA-50-5044      TCGA-50-5045 
"SAGE1 WILD-TYPE" "SAGE1 WILD-TYPE" "SAGE1 WILD-TYPE" "SAGE1 WILD-TYPE" 
     TCGA-50-5049      TCGA-50-5051      TCGA-50-5055      TCGA-50-5066 
"SAGE1 WILD-TYPE" "SAGE1 WILD-TYPE" "SAGE1 WILD-TYPE" "SAGE1 WILD-TYPE" 
     TCGA-50-5068      TCGA-50-5072      TCGA-50-5930      TCGA-50-5931 
"SAGE1 WILD-TYPE" "SAGE1 WILD-TYPE" "SAGE1 WILD-TYPE" "SAGE1 WILD-TYPE" 
     TCGA-50-5932      TCGA-50-5933      TCGA-50-5935      TCGA-50-5936 
"SAGE1 WILD-TYPE" "SAGE1 WILD-TYPE" "SAGE1 WILD-TYPE" "SAGE1 WILD-TYPE" 
     TCGA-50-5939      TCGA-50-5941      TCGA-50-5942      TCGA-50-5944 
"SAGE1 WILD-TYPE" "SAGE1 WILD-TYPE" "SAGE1 WILD-TYPE" "SAGE1 WILD-TYPE" 
     TCGA-50-5946      TCGA-50-6590      TCGA-50-6591      TCGA-50-6592 
"SAGE1 WILD-TYPE"   "SAGE1 MUTATED" "SAGE1 WILD-TYPE" "SAGE1 WILD-TYPE" 
     TCGA-50-6593      TCGA-50-6594      TCGA-50-6595      TCGA-50-6597 
"SAGE1 WILD-TYPE" "SAGE1 WILD-TYPE" "SAGE1 WILD-TYPE" "SAGE1 WILD-TYPE" 
     TCGA-55-1592      TCGA-55-1594      TCGA-55-1595      TCGA-55-1596 
"SAGE1 WILD-TYPE" "SAGE1 WILD-TYPE" "SAGE1 WILD-TYPE" "SAGE1 WILD-TYPE" 
     TCGA-55-5899      TCGA-55-6543      TCGA-55-6642      TCGA-55-6712 
"SAGE1 WILD-TYPE" "SAGE1 WILD-TYPE" "SAGE1 WILD-TYPE" "SAGE1 WILD-TYPE" 
     TCGA-64-1676      TCGA-64-1677      TCGA-64-1678      TCGA-64-1680 
"SAGE1 WILD-TYPE" "SAGE1 WILD-TYPE" "SAGE1 WILD-TYPE" "SAGE1 WILD-TYPE" 
     TCGA-64-5774      TCGA-64-5775      TCGA-64-5778      TCGA-64-5779 
"SAGE1 WILD-TYPE" "SAGE1 WILD-TYPE" "SAGE1 WILD-TYPE" "SAGE1 WILD-TYPE" 
     TCGA-64-5781      TCGA-64-5815      TCGA-67-3770      TCGA-67-3771 
  "SAGE1 MUTATED" "SAGE1 WILD-TYPE" "SAGE1 WILD-TYPE" "SAGE1 WILD-TYPE" 
     TCGA-67-3772      TCGA-67-3773      TCGA-67-3774      TCGA-67-6215 
"SAGE1 WILD-TYPE" "SAGE1 WILD-TYPE" "SAGE1 WILD-TYPE" "SAGE1 WILD-TYPE" 
     TCGA-67-6216      TCGA-67-6217      TCGA-71-6725      TCGA-73-4658 
"SAGE1 WILD-TYPE" "SAGE1 WILD-TYPE" "SAGE1 WILD-TYPE" "SAGE1 WILD-TYPE" 
     TCGA-73-4659      TCGA-73-4662      TCGA-73-4666      TCGA-73-4668 
"SAGE1 WILD-TYPE" "SAGE1 WILD-TYPE" "SAGE1 WILD-TYPE" "SAGE1 WILD-TYPE" 
     TCGA-73-4670      TCGA-73-4675      TCGA-73-4676      TCGA-73-4677 
"SAGE1 WILD-TYPE" "SAGE1 WILD-TYPE"   "SAGE1 MUTATED" "SAGE1 WILD-TYPE" 
     TCGA-91-6828      TCGA-91-6829      TCGA-91-6831      TCGA-91-6835 
"SAGE1 WILD-TYPE" "SAGE1 WILD-TYPE" "SAGE1 WILD-TYPE" "SAGE1 WILD-TYPE" 
     TCGA-91-6836 
"SAGE1 WILD-TYPE" 
     TCGA-05-4249      TCGA-05-4250      TCGA-05-4382      TCGA-05-4384 
"SAGE1 WILD-TYPE" "SAGE1 WILD-TYPE" "SAGE1 WILD-TYPE" "SAGE1 WILD-TYPE" 
     TCGA-05-4390      TCGA-05-4396      TCGA-05-4397      TCGA-05-4398 
"SAGE1 WILD-TYPE"   "SAGE1 MUTATED" "SAGE1 WILD-TYPE" "SAGE1 WILD-TYPE" 
     TCGA-05-4402      TCGA-05-4405      TCGA-05-4415      TCGA-05-4417 
"SAGE1 WILD-TYPE" "SAGE1 WILD-TYPE" "SAGE1 WILD-TYPE" "SAGE1 WILD-TYPE" 
     TCGA-05-4418      TCGA-05-4420      TCGA-05-4424      TCGA-05-4426 
"SAGE1 WILD-TYPE" "SAGE1 WILD-TYPE" "SAGE1 WILD-TYPE" "SAGE1 WILD-TYPE" 
     TCGA-05-4427      TCGA-05-4430      TCGA-05-4432      TCGA-05-4433 
"SAGE1 WILD-TYPE" "SAGE1 WILD-TYPE" "SAGE1 WILD-TYPE" "SAGE1 WILD-TYPE" 
     TCGA-05-4434      TCGA-05-5420      TCGA-05-5423      TCGA-05-5425 
"SAGE1 WILD-TYPE" "SAGE1 WILD-TYPE"   "SAGE1 MUTATED" "SAGE1 WILD-TYPE" 
     TCGA-05-5429      TCGA-05-5715      TCGA-35-3615      TCGA-35-4122 
"SAGE1 WILD-TYPE" "SAGE1 WILD-TYPE" "SAGE1 WILD-TYPE" "SAGE1 WILD-TYPE" 
     TCGA-35-4123      TCGA-35-5375      TCGA-38-4625      TCGA-38-4626 
"SAGE1 WILD-TYPE" "SAGE1 WILD-TYPE"   "SAGE1 MUTATED" "SAGE1 WILD-TYPE" 
     TCGA-38-4627      TCGA-38-4628      TCGA-38-4629      TCGA-38-4630 
"SAGE1 WILD-TYPE" "SAGE1 WILD-TYPE" "SAGE1 WILD-TYPE" "SAGE1 WILD-TYPE" 
     TCGA-38-4631      TCGA-38-4632      TCGA-38-6178      TCGA-44-2655 
"SAGE1 WILD-TYPE" "SAGE1 WILD-TYPE" "SAGE1 WILD-TYPE" "SAGE1 WILD-TYPE" 
     TCGA-44-2656      TCGA-44-2657      TCGA-44-2659      TCGA-44-2661 
"SAGE1 WILD-TYPE" "SAGE1 WILD-TYPE"   "SAGE1 MUTATED" "SAGE1 WILD-TYPE" 
     TCGA-44-2662      TCGA-44-2665      TCGA-44-2666      TCGA-44-2668 
"SAGE1 WILD-TYPE" "SAGE1 WILD-TYPE" "SAGE1 WILD-TYPE" "SAGE1 WILD-TYPE" 
     TCGA-44-3396      TCGA-44-3398      TCGA-44-3918      TCGA-44-3919 
"SAGE1 WILD-TYPE" "SAGE1 WILD-TYPE" "SAGE1 WILD-TYPE" "SAGE1 WILD-TYPE" 
     TCGA-44-4112      TCGA-44-5643      TCGA-44-5645      TCGA-44-6144 
"SAGE1 WILD-TYPE" "SAGE1 WILD-TYPE"   "SAGE1 MUTATED" "SAGE1 WILD-TYPE" 
     TCGA-44-6145      TCGA-44-6146      TCGA-44-6147      TCGA-44-6148 
"SAGE1 WILD-TYPE" "SAGE1 WILD-TYPE" "SAGE1 WILD-TYPE" "SAGE1 WILD-TYPE" 
     TCGA-44-6774      TCGA-44-6775      TCGA-44-6776      TCGA-44-6777 
  "SAGE1 MUTATED"   "SAGE1 MUTATED" "SAGE1 WILD-TYPE" "SAGE1 WILD-TYPE" 
     TCGA-44-6778      TCGA-44-6779      TCGA-49-4486      TCGA-49-4487 
"SAGE1 WILD-TYPE" "SAGE1 WILD-TYPE" "SAGE1 WILD-TYPE" "SAGE1 WILD-TYPE" 
     TCGA-49-4488      TCGA-49-4490      TCGA-49-4494      TCGA-49-4501 
"SAGE1 WILD-TYPE" "SAGE1 WILD-TYPE" "SAGE1 WILD-TYPE" "SAGE1 WILD-TYPE" 
     TCGA-49-4505      TCGA-49-4506      TCGA-49-4507      TCGA-49-4510 
"SAGE1 WILD-TYPE" "SAGE1 WILD-TYPE" "SAGE1 WILD-TYPE" "SAGE1 WILD-TYPE" 
     TCGA-49-4512      TCGA-49-4514      TCGA-49-6742      TCGA-49-6743 
"SAGE1 WILD-TYPE" "SAGE1 WILD-TYPE" "SAGE1 WILD-TYPE" "SAGE1 WILD-TYPE" 
     TCGA-49-6744      TCGA-49-6745      TCGA-50-5044      TCGA-50-5045 
"SAGE1 WILD-TYPE" "SAGE1 WILD-TYPE" "SAGE1 WILD-TYPE" "SAGE1 WILD-TYPE" 
     TCGA-50-5049      TCGA-50-5051      TCGA-50-5055      TCGA-50-5066 
"SAGE1 WILD-TYPE" "SAGE1 WILD-TYPE" "SAGE1 WILD-TYPE" "SAGE1 WILD-TYPE" 
     TCGA-50-5068      TCGA-50-5072      TCGA-50-5930      TCGA-50-5931 
"SAGE1 WILD-TYPE" "SAGE1 WILD-TYPE" "SAGE1 WILD-TYPE" "SAGE1 WILD-TYPE" 
     TCGA-50-5932      TCGA-50-5933      TCGA-50-5935      TCGA-50-5936 
"SAGE1 WILD-TYPE" "SAGE1 WILD-TYPE" "SAGE1 WILD-TYPE" "SAGE1 WILD-TYPE" 
     TCGA-50-5939      TCGA-50-5941      TCGA-50-5942      TCGA-50-5944 
"SAGE1 WILD-TYPE" "SAGE1 WILD-TYPE" "SAGE1 WILD-TYPE" "SAGE1 WILD-TYPE" 
     TCGA-50-5946      TCGA-50-6590      TCGA-50-6591      TCGA-50-6592 
"SAGE1 WILD-TYPE"   "SAGE1 MUTATED" "SAGE1 WILD-TYPE" "SAGE1 WILD-TYPE" 
     TCGA-50-6593      TCGA-50-6594      TCGA-50-6595      TCGA-50-6597 
"SAGE1 WILD-TYPE" "SAGE1 WILD-TYPE" "SAGE1 WILD-TYPE" "SAGE1 WILD-TYPE" 
     TCGA-55-1592      TCGA-55-1594      TCGA-55-1595      TCGA-55-1596 
"SAGE1 WILD-TYPE" "SAGE1 WILD-TYPE" "SAGE1 WILD-TYPE" "SAGE1 WILD-TYPE" 
     TCGA-55-5899      TCGA-55-6543      TCGA-55-6642      TCGA-55-6712 
"SAGE1 WILD-TYPE" "SAGE1 WILD-TYPE" "SAGE1 WILD-TYPE" "SAGE1 WILD-TYPE" 
     TCGA-64-1676      TCGA-64-1677      TCGA-64-1678      TCGA-64-1680 
"SAGE1 WILD-TYPE" "SAGE1 WILD-TYPE" "SAGE1 WILD-TYPE" "SAGE1 WILD-TYPE" 
     TCGA-64-5774      TCGA-64-5775      TCGA-64-5778      TCGA-64-5779 
"SAGE1 WILD-TYPE" "SAGE1 WILD-TYPE" "SAGE1 WILD-TYPE" "SAGE1 WILD-TYPE" 
     TCGA-64-5781      TCGA-64-5815      TCGA-67-3770      TCGA-67-3771 
  "SAGE1 MUTATED" "SAGE1 WILD-TYPE" "SAGE1 WILD-TYPE" "SAGE1 WILD-TYPE" 
     TCGA-67-3772      TCGA-67-3773      TCGA-67-3774      TCGA-67-6215 
"SAGE1 WILD-TYPE" "SAGE1 WILD-TYPE" "SAGE1 WILD-TYPE" "SAGE1 WILD-TYPE" 
     TCGA-67-6216      TCGA-67-6217      TCGA-71-6725      TCGA-73-4658 
"SAGE1 WILD-TYPE" "SAGE1 WILD-TYPE" "SAGE1 WILD-TYPE" "SAGE1 WILD-TYPE" 
     TCGA-73-4659      TCGA-73-4662      TCGA-73-4666      TCGA-73-4668 
"SAGE1 WILD-TYPE" "SAGE1 WILD-TYPE" "SAGE1 WILD-TYPE" "SAGE1 WILD-TYPE" 
     TCGA-73-4670      TCGA-73-4675      TCGA-73-4676      TCGA-73-4677 
"SAGE1 WILD-TYPE" "SAGE1 WILD-TYPE"   "SAGE1 MUTATED" "SAGE1 WILD-TYPE" 
     TCGA-91-6828      TCGA-91-6829      TCGA-91-6831      TCGA-91-6835 
"SAGE1 WILD-TYPE" "SAGE1 WILD-TYPE" "SAGE1 WILD-TYPE" "SAGE1 WILD-TYPE" 
     TCGA-91-6836 
"SAGE1 WILD-TYPE" 
[1] "hr=" "1.5"
D191V2, continuous
D191V3, binary
[1] "tbl2"
                 cls
clus              [,1] [,2]
  SAGE1 MUTATED      7    3
  SAGE1 WILD-TYPE   86   76
        clus
vv       SAGE1 MUTATED SAGE1 WILD-TYPE
  FEMALE             7              86
  MALE               3              76
D191V4, continuous
[1] "Remove cluster labels:" "SAGE1 MUTATED"         
clus
  SAGE1 MUTATED SAGE1 WILD-TYPE 
              1              11 
     TCGA-35-4122      TCGA-35-4123      TCGA-35-5375      TCGA-64-1677 
"SAGE1 WILD-TYPE" "SAGE1 WILD-TYPE" "SAGE1 WILD-TYPE" "SAGE1 WILD-TYPE" 
     TCGA-64-5778      TCGA-71-6725      TCGA-73-4659      TCGA-73-4662 
"SAGE1 WILD-TYPE" "SAGE1 WILD-TYPE" "SAGE1 WILD-TYPE" "SAGE1 WILD-TYPE" 
     TCGA-73-4666      TCGA-73-4668      TCGA-75-5122 
"SAGE1 WILD-TYPE" "SAGE1 WILD-TYPE" "SAGE1 WILD-TYPE" 
D191V5, multiclass
D191V6, multiclass
    clus
vv   SAGE1 MUTATED SAGE1 WILD-TYPE
  T1             2              39
  T2             6             102
  T3             0              14
  T4             1               7
D191V7, multiclass
       clus
vv      SAGE1 MUTATED SAGE1 WILD-TYPE
  N0                4              91
  N1                4              33
  N2+N3             1              34
D191V8, multiclass
    clus
vv   SAGE1 MUTATED SAGE1 WILD-TYPE
  M0             8             129
  M1             0               9
  MX             1              21
D191V9, multiclass
     clus
vv    SAGE1 MUTATED SAGE1 WILD-TYPE
  I               5              83
  II              3              30
  III             2              37
  IV              0               9
D191V10, binary
[1] "tbl2"
                 cls
clus              [,1] [,2]
  SAGE1 MUTATED      1    9
  SAGE1 WILD-TYPE   15  147
     clus
vv    SAGE1 MUTATED SAGE1 WILD-TYPE
  NO              1              15
  YES             9             147
D191V11, continuous
D191V12, continuous
D191V13, multiclass
                                             clus
vv                                            SAGE1 MUTATED SAGE1 WILD-TYPE
  CURRENT REFORMED SMOKER FOR < OR = 15 YEARS             5              57
  CURRENT REFORMED SMOKER FOR > 15 YEARS                  3              43
  CURRENT SMOKER                                          2              26
  LIFELONG NON-SMOKER                                     0              24
D191V14, continuous

Clustering(192) Variable = OR2T8 MUTATION ANALYSIS
D192V1, survival
                 sevent
clus2              0  1
  OR2T8 MUTATED    4  4
  OR2T8 WILD-TYPE 95 46
  OR2T8 MUTATED OR2T8 WILD-TYPE 
              8             141 
  OR2T8 MUTATED OR2T8 WILD-TYPE 
              4              46 
$`OR2T8 MUTATED`
TCGA-05-4430 TCGA-38-4629 TCGA-44-2656 TCGA-49-4488 TCGA-49-4506 TCGA-50-5045 
       25.02        28.37        19.10        28.57        32.84        71.47 
TCGA-50-5049 TCGA-73-4668 
       48.82        15.35 

$`OR2T8 WILD-TYPE`
TCGA-05-4249 TCGA-05-4250 TCGA-05-4382 TCGA-05-4384 TCGA-05-4390 TCGA-05-4396 
       38.07         3.98        19.92        14.01        37.02         9.96 
TCGA-05-4397 TCGA-05-4398 TCGA-05-4402 TCGA-05-4405 TCGA-05-4415 TCGA-05-4417 
       24.03        47.05         8.02        20.05         2.96        14.93 
TCGA-05-4418 TCGA-05-4420 TCGA-05-4424 TCGA-05-4426 TCGA-05-4427 TCGA-05-4432 
        8.98        29.95        30.02        26.01        26.01        25.02 
TCGA-05-4433 TCGA-05-4434 TCGA-05-5420 TCGA-05-5423 TCGA-05-5425 TCGA-05-5429 
       24.00        15.02         1.02         4.96         2.96         0.99 
TCGA-05-5715 TCGA-35-3615 TCGA-35-4122 TCGA-35-4123 TCGA-35-5375 TCGA-38-4625 
        2.04         0.46         7.36         5.95         8.68        47.61 
TCGA-38-4626 TCGA-38-4627 TCGA-38-4628 TCGA-38-4630 TCGA-38-4631 TCGA-38-4632 
       85.32        37.71        49.02        35.28        11.64        44.61 
TCGA-38-6178 TCGA-44-2655 TCGA-44-2657 TCGA-44-2659 TCGA-44-2661 TCGA-44-2662 
        5.19        18.87        13.15        17.39         3.39        15.78 
TCGA-44-2665 TCGA-44-2666 TCGA-44-2668 TCGA-44-3396 TCGA-44-3398 TCGA-44-3918 
       13.15         3.19         8.09        10.22         8.32         6.44 
TCGA-44-3919 TCGA-44-4112 TCGA-44-5643 TCGA-44-5645 TCGA-44-6144 TCGA-44-6145 
        6.21         4.60         3.48         6.84         0.30         3.35 
TCGA-44-6146 TCGA-44-6147 TCGA-44-6148 TCGA-44-6774 TCGA-44-6775 TCGA-44-6776 
        9.93         7.76         3.12         5.42         2.70        63.72 
TCGA-44-6777 TCGA-44-6778 TCGA-44-6779 TCGA-49-4486 TCGA-49-4487 TCGA-49-4490 
       32.45        36.49        16.41        76.21        28.11        12.66 
TCGA-49-4494 TCGA-49-4501 TCGA-49-4505 TCGA-49-4507 TCGA-49-4510 TCGA-49-4512 
       35.54        46.72        14.07         8.81        29.46        29.75 
TCGA-49-4514 TCGA-49-6742 TCGA-49-6743 TCGA-49-6744 TCGA-49-6745 TCGA-50-5044 
       43.20        15.02        12.13        12.99         4.93        20.48 
TCGA-50-5051 TCGA-50-5055 TCGA-50-5066 TCGA-50-5068 TCGA-50-5072 TCGA-50-5930 
       14.96        25.81         9.76        49.28         8.05         9.27 
TCGA-50-5931 TCGA-50-5932 TCGA-50-5933 TCGA-50-5935 TCGA-50-5936 TCGA-50-5939 
        8.78        35.87        77.88        21.47         8.45        15.12 
TCGA-50-5941 TCGA-50-5942 TCGA-50-5944 TCGA-50-5946 TCGA-50-6590 TCGA-50-6591 
        9.37         4.44        12.26        11.47        42.31         3.88 
TCGA-50-6592 TCGA-50-6593 TCGA-50-6594 TCGA-50-6595 TCGA-50-6597 TCGA-55-1592 
       25.51        11.05        12.16         6.21        33.37        23.05 
TCGA-55-1594 TCGA-55-1595 TCGA-55-1596 TCGA-55-5899 TCGA-55-6543 TCGA-55-6642 
       38.73        48.62        45.17         2.86         0.07        32.61 
TCGA-55-6712 TCGA-64-1676 TCGA-64-1677 TCGA-64-1678 TCGA-64-1680 TCGA-64-5774 
        0.79        56.81        20.65        39.09        37.02        83.84 
TCGA-64-5775 TCGA-64-5778 TCGA-64-5779 TCGA-64-5781 TCGA-64-5815 TCGA-67-3770 
        0.10        30.44        16.67        39.52         7.33         0.99 
TCGA-67-3771 TCGA-67-3772 TCGA-67-3773 TCGA-67-3774 TCGA-67-6215 TCGA-67-6216 
        1.97         0.59         2.04         0.59         0.89         0.69 
TCGA-67-6217 TCGA-71-6725 TCGA-73-4658 TCGA-73-4659 TCGA-73-4662 TCGA-73-4666 
       13.87         2.01        52.57        23.38        29.95        20.28 
TCGA-73-4670 TCGA-73-4675 TCGA-73-4676 TCGA-73-4677 TCGA-91-6828 TCGA-91-6829 
        0.46         1.32         4.01         1.25         1.22        41.33 
TCGA-91-6831 TCGA-91-6835 TCGA-91-6836 
        1.28         1.15         0.36 

  OR2T8 MUTATED OR2T8 WILD-TYPE 
          15.35            0.07 
  OR2T8 MUTATED OR2T8 WILD-TYPE 
          71.47           85.32 
  OR2T8 MUTATED OR2T8 WILD-TYPE 
          28.47           12.66 
[1] "15.3 - 71.5 (28.5)" "0.1 - 85.3 (12.7)" 
     TCGA-05-4249      TCGA-05-4250      TCGA-05-4382      TCGA-05-4384 
"OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" 
     TCGA-05-4390      TCGA-05-4396      TCGA-05-4397      TCGA-05-4398 
"OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" 
     TCGA-05-4402      TCGA-05-4405      TCGA-05-4415      TCGA-05-4417 
"OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" 
     TCGA-05-4418      TCGA-05-4420      TCGA-05-4424      TCGA-05-4426 
"OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" 
     TCGA-05-4427      TCGA-05-4430      TCGA-05-4432      TCGA-05-4433 
"OR2T8 WILD-TYPE"   "OR2T8 MUTATED" "OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" 
     TCGA-05-4434      TCGA-05-5420      TCGA-05-5423      TCGA-05-5425 
"OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" 
     TCGA-05-5429      TCGA-05-5715      TCGA-35-3615      TCGA-35-4122 
"OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" 
     TCGA-35-4123      TCGA-35-5375      TCGA-38-4625      TCGA-38-4626 
"OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" 
     TCGA-38-4627      TCGA-38-4628      TCGA-38-4629      TCGA-38-4630 
"OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE"   "OR2T8 MUTATED" "OR2T8 WILD-TYPE" 
     TCGA-38-4631      TCGA-38-4632      TCGA-38-6178      TCGA-44-2655 
"OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" 
     TCGA-44-2656      TCGA-44-2657      TCGA-44-2659      TCGA-44-2661 
  "OR2T8 MUTATED" "OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" 
     TCGA-44-2662      TCGA-44-2665      TCGA-44-2666      TCGA-44-2668 
"OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" 
     TCGA-44-3396      TCGA-44-3398      TCGA-44-3918      TCGA-44-3919 
"OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" 
     TCGA-44-4112      TCGA-44-5643      TCGA-44-5645      TCGA-44-6144 
"OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" 
     TCGA-44-6145      TCGA-44-6146      TCGA-44-6147      TCGA-44-6148 
"OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" 
     TCGA-44-6774      TCGA-44-6775      TCGA-44-6776      TCGA-44-6777 
"OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" 
     TCGA-44-6778      TCGA-44-6779      TCGA-49-4486      TCGA-49-4487 
"OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" 
     TCGA-49-4488      TCGA-49-4490      TCGA-49-4494      TCGA-49-4501 
  "OR2T8 MUTATED" "OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" 
     TCGA-49-4505      TCGA-49-4506      TCGA-49-4507      TCGA-49-4510 
"OR2T8 WILD-TYPE"   "OR2T8 MUTATED" "OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" 
     TCGA-49-4512      TCGA-49-4514      TCGA-49-6742      TCGA-49-6743 
"OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" 
     TCGA-49-6744      TCGA-49-6745      TCGA-50-5044      TCGA-50-5045 
"OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE"   "OR2T8 MUTATED" 
     TCGA-50-5049      TCGA-50-5051      TCGA-50-5055      TCGA-50-5066 
  "OR2T8 MUTATED" "OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" 
     TCGA-50-5068      TCGA-50-5072      TCGA-50-5930      TCGA-50-5931 
"OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" 
     TCGA-50-5932      TCGA-50-5933      TCGA-50-5935      TCGA-50-5936 
"OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" 
     TCGA-50-5939      TCGA-50-5941      TCGA-50-5942      TCGA-50-5944 
"OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" 
     TCGA-50-5946      TCGA-50-6590      TCGA-50-6591      TCGA-50-6592 
"OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" 
     TCGA-50-6593      TCGA-50-6594      TCGA-50-6595      TCGA-50-6597 
"OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" 
     TCGA-55-1592      TCGA-55-1594      TCGA-55-1595      TCGA-55-1596 
"OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" 
     TCGA-55-5899      TCGA-55-6543      TCGA-55-6642      TCGA-55-6712 
"OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" 
     TCGA-64-1676      TCGA-64-1677      TCGA-64-1678      TCGA-64-1680 
"OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" 
     TCGA-64-5774      TCGA-64-5775      TCGA-64-5778      TCGA-64-5779 
"OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" 
     TCGA-64-5781      TCGA-64-5815      TCGA-67-3770      TCGA-67-3771 
"OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" 
     TCGA-67-3772      TCGA-67-3773      TCGA-67-3774      TCGA-67-6215 
"OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" 
     TCGA-67-6216      TCGA-67-6217      TCGA-71-6725      TCGA-73-4658 
"OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" 
     TCGA-73-4659      TCGA-73-4662      TCGA-73-4666      TCGA-73-4668 
"OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE"   "OR2T8 MUTATED" 
     TCGA-73-4670      TCGA-73-4675      TCGA-73-4676      TCGA-73-4677 
"OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" 
     TCGA-91-6828      TCGA-91-6829      TCGA-91-6831      TCGA-91-6835 
"OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" 
     TCGA-91-6836 
"OR2T8 WILD-TYPE" 
     TCGA-05-4249      TCGA-05-4250      TCGA-05-4382      TCGA-05-4384 
"OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" 
     TCGA-05-4390      TCGA-05-4396      TCGA-05-4397      TCGA-05-4398 
"OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" 
     TCGA-05-4402      TCGA-05-4405      TCGA-05-4415      TCGA-05-4417 
"OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" 
     TCGA-05-4418      TCGA-05-4420      TCGA-05-4424      TCGA-05-4426 
"OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" 
     TCGA-05-4427      TCGA-05-4430      TCGA-05-4432      TCGA-05-4433 
"OR2T8 WILD-TYPE"   "OR2T8 MUTATED" "OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" 
     TCGA-05-4434      TCGA-05-5420      TCGA-05-5423      TCGA-05-5425 
"OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" 
     TCGA-05-5429      TCGA-05-5715      TCGA-35-3615      TCGA-35-4122 
"OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" 
     TCGA-35-4123      TCGA-35-5375      TCGA-38-4625      TCGA-38-4626 
"OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" 
     TCGA-38-4627      TCGA-38-4628      TCGA-38-4629      TCGA-38-4630 
"OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE"   "OR2T8 MUTATED" "OR2T8 WILD-TYPE" 
     TCGA-38-4631      TCGA-38-4632      TCGA-38-6178      TCGA-44-2655 
"OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" 
     TCGA-44-2656      TCGA-44-2657      TCGA-44-2659      TCGA-44-2661 
  "OR2T8 MUTATED" "OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" 
     TCGA-44-2662      TCGA-44-2665      TCGA-44-2666      TCGA-44-2668 
"OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" 
     TCGA-44-3396      TCGA-44-3398      TCGA-44-3918      TCGA-44-3919 
"OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" 
     TCGA-44-4112      TCGA-44-5643      TCGA-44-5645      TCGA-44-6144 
"OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" 
     TCGA-44-6145      TCGA-44-6146      TCGA-44-6147      TCGA-44-6148 
"OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" 
     TCGA-44-6774      TCGA-44-6775      TCGA-44-6776      TCGA-44-6777 
"OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" 
     TCGA-44-6778      TCGA-44-6779      TCGA-49-4486      TCGA-49-4487 
"OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" 
     TCGA-49-4488      TCGA-49-4490      TCGA-49-4494      TCGA-49-4501 
  "OR2T8 MUTATED" "OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" 
     TCGA-49-4505      TCGA-49-4506      TCGA-49-4507      TCGA-49-4510 
"OR2T8 WILD-TYPE"   "OR2T8 MUTATED" "OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" 
     TCGA-49-4512      TCGA-49-4514      TCGA-49-6742      TCGA-49-6743 
"OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" 
     TCGA-49-6744      TCGA-49-6745      TCGA-50-5044      TCGA-50-5045 
"OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE"   "OR2T8 MUTATED" 
     TCGA-50-5049      TCGA-50-5051      TCGA-50-5055      TCGA-50-5066 
  "OR2T8 MUTATED" "OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" 
     TCGA-50-5068      TCGA-50-5072      TCGA-50-5930      TCGA-50-5931 
"OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" 
     TCGA-50-5932      TCGA-50-5933      TCGA-50-5935      TCGA-50-5936 
"OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" 
     TCGA-50-5939      TCGA-50-5941      TCGA-50-5942      TCGA-50-5944 
"OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" 
     TCGA-50-5946      TCGA-50-6590      TCGA-50-6591      TCGA-50-6592 
"OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" 
     TCGA-50-6593      TCGA-50-6594      TCGA-50-6595      TCGA-50-6597 
"OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" 
     TCGA-55-1592      TCGA-55-1594      TCGA-55-1595      TCGA-55-1596 
"OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" 
     TCGA-55-5899      TCGA-55-6543      TCGA-55-6642      TCGA-55-6712 
"OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" 
     TCGA-64-1676      TCGA-64-1677      TCGA-64-1678      TCGA-64-1680 
"OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" 
     TCGA-64-5774      TCGA-64-5775      TCGA-64-5778      TCGA-64-5779 
"OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" 
     TCGA-64-5781      TCGA-64-5815      TCGA-67-3770      TCGA-67-3771 
"OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" 
     TCGA-67-3772      TCGA-67-3773      TCGA-67-3774      TCGA-67-6215 
"OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" 
     TCGA-67-6216      TCGA-67-6217      TCGA-71-6725      TCGA-73-4658 
"OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" 
     TCGA-73-4659      TCGA-73-4662      TCGA-73-4666      TCGA-73-4668 
"OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE"   "OR2T8 MUTATED" 
     TCGA-73-4670      TCGA-73-4675      TCGA-73-4676      TCGA-73-4677 
"OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" 
     TCGA-91-6828      TCGA-91-6829      TCGA-91-6831      TCGA-91-6835 
"OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" 
     TCGA-91-6836 
"OR2T8 WILD-TYPE" 
     TCGA-05-4249      TCGA-05-4250      TCGA-05-4382      TCGA-05-4384 
"OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" 
     TCGA-05-4390      TCGA-05-4396      TCGA-05-4397      TCGA-05-4398 
"OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" 
     TCGA-05-4402      TCGA-05-4405      TCGA-05-4415      TCGA-05-4417 
"OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" 
     TCGA-05-4418      TCGA-05-4420      TCGA-05-4424      TCGA-05-4426 
"OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" 
     TCGA-05-4427      TCGA-05-4430      TCGA-05-4432      TCGA-05-4433 
"OR2T8 WILD-TYPE"   "OR2T8 MUTATED" "OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" 
     TCGA-05-4434      TCGA-05-5420      TCGA-05-5423      TCGA-05-5425 
"OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" 
     TCGA-05-5429      TCGA-05-5715      TCGA-35-3615      TCGA-35-4122 
"OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" 
     TCGA-35-4123      TCGA-35-5375      TCGA-38-4625      TCGA-38-4626 
"OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" 
     TCGA-38-4627      TCGA-38-4628      TCGA-38-4629      TCGA-38-4630 
"OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE"   "OR2T8 MUTATED" "OR2T8 WILD-TYPE" 
     TCGA-38-4631      TCGA-38-4632      TCGA-38-6178      TCGA-44-2655 
"OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" 
     TCGA-44-2656      TCGA-44-2657      TCGA-44-2659      TCGA-44-2661 
  "OR2T8 MUTATED" "OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" 
     TCGA-44-2662      TCGA-44-2665      TCGA-44-2666      TCGA-44-2668 
"OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" 
     TCGA-44-3396      TCGA-44-3398      TCGA-44-3918      TCGA-44-3919 
"OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" 
     TCGA-44-4112      TCGA-44-5643      TCGA-44-5645      TCGA-44-6144 
"OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" 
     TCGA-44-6145      TCGA-44-6146      TCGA-44-6147      TCGA-44-6148 
"OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" 
     TCGA-44-6774      TCGA-44-6775      TCGA-44-6776      TCGA-44-6777 
"OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" 
     TCGA-44-6778      TCGA-44-6779      TCGA-49-4486      TCGA-49-4487 
"OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" 
     TCGA-49-4488      TCGA-49-4490      TCGA-49-4494      TCGA-49-4501 
  "OR2T8 MUTATED" "OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" 
     TCGA-49-4505      TCGA-49-4506      TCGA-49-4507      TCGA-49-4510 
"OR2T8 WILD-TYPE"   "OR2T8 MUTATED" "OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" 
     TCGA-49-4512      TCGA-49-4514      TCGA-49-6742      TCGA-49-6743 
"OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" 
     TCGA-49-6744      TCGA-49-6745      TCGA-50-5044      TCGA-50-5045 
"OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE"   "OR2T8 MUTATED" 
     TCGA-50-5049      TCGA-50-5051      TCGA-50-5055      TCGA-50-5066 
  "OR2T8 MUTATED" "OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" 
     TCGA-50-5068      TCGA-50-5072      TCGA-50-5930      TCGA-50-5931 
"OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" 
     TCGA-50-5932      TCGA-50-5933      TCGA-50-5935      TCGA-50-5936 
"OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" 
     TCGA-50-5939      TCGA-50-5941      TCGA-50-5942      TCGA-50-5944 
"OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" 
     TCGA-50-5946      TCGA-50-6590      TCGA-50-6591      TCGA-50-6592 
"OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" 
     TCGA-50-6593      TCGA-50-6594      TCGA-50-6595      TCGA-50-6597 
"OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" 
     TCGA-55-1592      TCGA-55-1594      TCGA-55-1595      TCGA-55-1596 
"OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" 
     TCGA-55-5899      TCGA-55-6543      TCGA-55-6642      TCGA-55-6712 
"OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" 
     TCGA-64-1676      TCGA-64-1677      TCGA-64-1678      TCGA-64-1680 
"OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" 
     TCGA-64-5774      TCGA-64-5775      TCGA-64-5778      TCGA-64-5779 
"OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" 
     TCGA-64-5781      TCGA-64-5815      TCGA-67-3770      TCGA-67-3771 
"OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" 
     TCGA-67-3772      TCGA-67-3773      TCGA-67-3774      TCGA-67-6215 
"OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" 
     TCGA-67-6216      TCGA-67-6217      TCGA-71-6725      TCGA-73-4658 
"OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" 
     TCGA-73-4659      TCGA-73-4662      TCGA-73-4666      TCGA-73-4668 
"OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE"   "OR2T8 MUTATED" 
     TCGA-73-4670      TCGA-73-4675      TCGA-73-4676      TCGA-73-4677 
"OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" 
     TCGA-91-6828      TCGA-91-6829      TCGA-91-6831      TCGA-91-6835 
"OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" 
     TCGA-91-6836 
"OR2T8 WILD-TYPE" 
[1] "hr=" "1.2"
D192V2, continuous
D192V3, binary
[1] "tbl2"
                 cls
clus              [,1] [,2]
  OR2T8 MUTATED      5    3
  OR2T8 WILD-TYPE   88   76
        clus
vv       OR2T8 MUTATED OR2T8 WILD-TYPE
  FEMALE             5              88
  MALE               3              76
D192V4, continuous
[1] "Remove cluster labels:" "OR2T8 MUTATED"         
clus
  OR2T8 MUTATED OR2T8 WILD-TYPE 
              1              11 
     TCGA-35-4122      TCGA-35-4123      TCGA-35-5375      TCGA-64-1677 
"OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" 
     TCGA-64-5778      TCGA-71-6725      TCGA-73-4659      TCGA-73-4662 
"OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" 
     TCGA-73-4666      TCGA-73-4676      TCGA-75-5122 
"OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" 
D192V5, multiclass
D192V6, multiclass
    clus
vv   OR2T8 MUTATED OR2T8 WILD-TYPE
  T1             1              40
  T2             6             102
  T3             1              13
  T4             0               8
D192V7, multiclass
       clus
vv      OR2T8 MUTATED OR2T8 WILD-TYPE
  N0                5              90
  N1                3              34
  N2+N3             0              35
D192V8, multiclass
    clus
vv   OR2T8 MUTATED OR2T8 WILD-TYPE
  M0             7             130
  M1             0               9
  MX             1              21
D192V9, multiclass
     clus
vv    OR2T8 MUTATED OR2T8 WILD-TYPE
  I               5              83
  II              3              30
  III             0              39
  IV              0               9
D192V10, binary
[1] "tbl2"
                 cls
clus              [,1] [,2]
  OR2T8 MUTATED      2    6
  OR2T8 WILD-TYPE   14  150
     clus
vv    OR2T8 MUTATED OR2T8 WILD-TYPE
  NO              2              14
  YES             6             150
D192V11, continuous
D192V12, continuous
D192V13, multiclass
                                             clus
vv                                            OR2T8 MUTATED OR2T8 WILD-TYPE
  CURRENT REFORMED SMOKER FOR < OR = 15 YEARS             4              58
  CURRENT REFORMED SMOKER FOR > 15 YEARS                  1              45
  CURRENT SMOKER                                          1              27
  LIFELONG NON-SMOKER                                     0              24
D192V14, continuous
[1] "Remove cluster labels:" "OR2T8 MUTATED"         
clus
  OR2T8 MUTATED OR2T8 WILD-TYPE 
              2              66 
     TCGA-05-4384      TCGA-05-4390      TCGA-05-4396      TCGA-05-4405 
"OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" 
     TCGA-05-4410      TCGA-05-4415      TCGA-05-4417      TCGA-05-4424 
"OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" 
     TCGA-05-4427      TCGA-05-4433      TCGA-05-5420      TCGA-05-5423 
"OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" 
     TCGA-05-5425      TCGA-05-5428      TCGA-35-4122      TCGA-35-4123 
"OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" 
     TCGA-35-5375      TCGA-38-4625      TCGA-38-4626      TCGA-44-2655 
"OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" 
     TCGA-44-2657      TCGA-44-2659      TCGA-44-2662      TCGA-44-2666 
"OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" 
     TCGA-44-2668      TCGA-44-3396      TCGA-44-3398      TCGA-44-3918 
"OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" 
     TCGA-44-4112      TCGA-44-5645      TCGA-44-6144      TCGA-44-6145 
"OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" 
     TCGA-44-6147      TCGA-44-6148      TCGA-44-6774      TCGA-44-6775 
"OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" 
     TCGA-44-6776      TCGA-44-6777      TCGA-44-6778      TCGA-44-6779 
"OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" 
     TCGA-49-4486      TCGA-49-4494      TCGA-49-4505      TCGA-55-1592 
"OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" 
     TCGA-55-1594      TCGA-55-1595      TCGA-55-1596      TCGA-55-5899 
"OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" 
     TCGA-55-6642      TCGA-55-6712      TCGA-64-1677      TCGA-64-1678 
"OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" 
     TCGA-64-1680      TCGA-64-5774      TCGA-64-5775      TCGA-64-5778 
"OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" 
     TCGA-64-5779      TCGA-64-5781      TCGA-73-4659      TCGA-73-4662 
"OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" 
     TCGA-73-4666      TCGA-73-4670      TCGA-73-4675      TCGA-73-4676 
"OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" 
     TCGA-91-6829      TCGA-91-6836 
"OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" 

Clustering(193) Variable = FOXI1 MUTATION ANALYSIS
D193V1, survival
                 sevent
clus2              0  1
  FOXI1 MUTATED    4  3
  FOXI1 WILD-TYPE 95 47
  FOXI1 MUTATED FOXI1 WILD-TYPE 
              7             142 
  FOXI1 MUTATED FOXI1 WILD-TYPE 
              3              47 
$`FOXI1 MUTATED`
TCGA-05-4382 TCGA-05-4426 TCGA-05-4430 TCGA-38-4629 TCGA-44-2657 TCGA-50-6590 
       19.92        26.01        25.02        28.37        13.15        42.31 
TCGA-50-6592 
       25.51 

$`FOXI1 WILD-TYPE`
TCGA-05-4249 TCGA-05-4250 TCGA-05-4384 TCGA-05-4390 TCGA-05-4396 TCGA-05-4397 
       38.07         3.98        14.01        37.02         9.96        24.03 
TCGA-05-4398 TCGA-05-4402 TCGA-05-4405 TCGA-05-4415 TCGA-05-4417 TCGA-05-4418 
       47.05         8.02        20.05         2.96        14.93         8.98 
TCGA-05-4420 TCGA-05-4424 TCGA-05-4427 TCGA-05-4432 TCGA-05-4433 TCGA-05-4434 
       29.95        30.02        26.01        25.02        24.00        15.02 
TCGA-05-5420 TCGA-05-5423 TCGA-05-5425 TCGA-05-5429 TCGA-05-5715 TCGA-35-3615 
        1.02         4.96         2.96         0.99         2.04         0.46 
TCGA-35-4122 TCGA-35-4123 TCGA-35-5375 TCGA-38-4625 TCGA-38-4626 TCGA-38-4627 
        7.36         5.95         8.68        47.61        85.32        37.71 
TCGA-38-4628 TCGA-38-4630 TCGA-38-4631 TCGA-38-4632 TCGA-38-6178 TCGA-44-2655 
       49.02        35.28        11.64        44.61         5.19        18.87 
TCGA-44-2656 TCGA-44-2659 TCGA-44-2661 TCGA-44-2662 TCGA-44-2665 TCGA-44-2666 
       19.10        17.39         3.39        15.78        13.15         3.19 
TCGA-44-2668 TCGA-44-3396 TCGA-44-3398 TCGA-44-3918 TCGA-44-3919 TCGA-44-4112 
        8.09        10.22         8.32         6.44         6.21         4.60 
TCGA-44-5643 TCGA-44-5645 TCGA-44-6144 TCGA-44-6145 TCGA-44-6146 TCGA-44-6147 
        3.48         6.84         0.30         3.35         9.93         7.76 
TCGA-44-6148 TCGA-44-6774 TCGA-44-6775 TCGA-44-6776 TCGA-44-6777 TCGA-44-6778 
        3.12         5.42         2.70        63.72        32.45        36.49 
TCGA-44-6779 TCGA-49-4486 TCGA-49-4487 TCGA-49-4488 TCGA-49-4490 TCGA-49-4494 
       16.41        76.21        28.11        28.57        12.66        35.54 
TCGA-49-4501 TCGA-49-4505 TCGA-49-4506 TCGA-49-4507 TCGA-49-4510 TCGA-49-4512 
       46.72        14.07        32.84         8.81        29.46        29.75 
TCGA-49-4514 TCGA-49-6742 TCGA-49-6743 TCGA-49-6744 TCGA-49-6745 TCGA-50-5044 
       43.20        15.02        12.13        12.99         4.93        20.48 
TCGA-50-5045 TCGA-50-5049 TCGA-50-5051 TCGA-50-5055 TCGA-50-5066 TCGA-50-5068 
       71.47        48.82        14.96        25.81         9.76        49.28 
TCGA-50-5072 TCGA-50-5930 TCGA-50-5931 TCGA-50-5932 TCGA-50-5933 TCGA-50-5935 
        8.05         9.27         8.78        35.87        77.88        21.47 
TCGA-50-5936 TCGA-50-5939 TCGA-50-5941 TCGA-50-5942 TCGA-50-5944 TCGA-50-5946 
        8.45        15.12         9.37         4.44        12.26        11.47 
TCGA-50-6591 TCGA-50-6593 TCGA-50-6594 TCGA-50-6595 TCGA-50-6597 TCGA-55-1592 
        3.88        11.05        12.16         6.21        33.37        23.05 
TCGA-55-1594 TCGA-55-1595 TCGA-55-1596 TCGA-55-5899 TCGA-55-6543 TCGA-55-6642 
       38.73        48.62        45.17         2.86         0.07        32.61 
TCGA-55-6712 TCGA-64-1676 TCGA-64-1677 TCGA-64-1678 TCGA-64-1680 TCGA-64-5774 
        0.79        56.81        20.65        39.09        37.02        83.84 
TCGA-64-5775 TCGA-64-5778 TCGA-64-5779 TCGA-64-5781 TCGA-64-5815 TCGA-67-3770 
        0.10        30.44        16.67        39.52         7.33         0.99 
TCGA-67-3771 TCGA-67-3772 TCGA-67-3773 TCGA-67-3774 TCGA-67-6215 TCGA-67-6216 
        1.97         0.59         2.04         0.59         0.89         0.69 
TCGA-67-6217 TCGA-71-6725 TCGA-73-4658 TCGA-73-4659 TCGA-73-4662 TCGA-73-4666 
       13.87         2.01        52.57        23.38        29.95        20.28 
TCGA-73-4668 TCGA-73-4670 TCGA-73-4675 TCGA-73-4676 TCGA-73-4677 TCGA-91-6828 
       15.35         0.46         1.32         4.01         1.25         1.22 
TCGA-91-6829 TCGA-91-6831 TCGA-91-6835 TCGA-91-6836 
       41.33         1.28         1.15         0.36 

  FOXI1 MUTATED FOXI1 WILD-TYPE 
          13.15            0.07 
  FOXI1 MUTATED FOXI1 WILD-TYPE 
          42.31           85.32 
  FOXI1 MUTATED FOXI1 WILD-TYPE 
         25.510          12.825 
[1] "13.2 - 42.3 (25.5)" "0.1 - 85.3 (12.8)" 
     TCGA-05-4249      TCGA-05-4250      TCGA-05-4382      TCGA-05-4384 
"FOXI1 WILD-TYPE" "FOXI1 WILD-TYPE"   "FOXI1 MUTATED" "FOXI1 WILD-TYPE" 
     TCGA-05-4390      TCGA-05-4396      TCGA-05-4397      TCGA-05-4398 
"FOXI1 WILD-TYPE" "FOXI1 WILD-TYPE" "FOXI1 WILD-TYPE" "FOXI1 WILD-TYPE" 
     TCGA-05-4402      TCGA-05-4405      TCGA-05-4415      TCGA-05-4417 
"FOXI1 WILD-TYPE" "FOXI1 WILD-TYPE" "FOXI1 WILD-TYPE" "FOXI1 WILD-TYPE" 
     TCGA-05-4418      TCGA-05-4420      TCGA-05-4424      TCGA-05-4426 
"FOXI1 WILD-TYPE" "FOXI1 WILD-TYPE" "FOXI1 WILD-TYPE"   "FOXI1 MUTATED" 
     TCGA-05-4427      TCGA-05-4430      TCGA-05-4432      TCGA-05-4433 
"FOXI1 WILD-TYPE"   "FOXI1 MUTATED" "FOXI1 WILD-TYPE" "FOXI1 WILD-TYPE" 
     TCGA-05-4434      TCGA-05-5420      TCGA-05-5423      TCGA-05-5425 
"FOXI1 WILD-TYPE" "FOXI1 WILD-TYPE" "FOXI1 WILD-TYPE" "FOXI1 WILD-TYPE" 
     TCGA-05-5429      TCGA-05-5715      TCGA-35-3615      TCGA-35-4122 
"FOXI1 WILD-TYPE" "FOXI1 WILD-TYPE" "FOXI1 WILD-TYPE" "FOXI1 WILD-TYPE" 
     TCGA-35-4123      TCGA-35-5375      TCGA-38-4625      TCGA-38-4626 
"FOXI1 WILD-TYPE" "FOXI1 WILD-TYPE" "FOXI1 WILD-TYPE" "FOXI1 WILD-TYPE" 
     TCGA-38-4627      TCGA-38-4628      TCGA-38-4629      TCGA-38-4630 
"FOXI1 WILD-TYPE" "FOXI1 WILD-TYPE"   "FOXI1 MUTATED" "FOXI1 WILD-TYPE" 
     TCGA-38-4631      TCGA-38-4632      TCGA-38-6178      TCGA-44-2655 
"FOXI1 WILD-TYPE" "FOXI1 WILD-TYPE" "FOXI1 WILD-TYPE" "FOXI1 WILD-TYPE" 
     TCGA-44-2656      TCGA-44-2657      TCGA-44-2659      TCGA-44-2661 
"FOXI1 WILD-TYPE"   "FOXI1 MUTATED" "FOXI1 WILD-TYPE" "FOXI1 WILD-TYPE" 
     TCGA-44-2662      TCGA-44-2665      TCGA-44-2666      TCGA-44-2668 
"FOXI1 WILD-TYPE" "FOXI1 WILD-TYPE" "FOXI1 WILD-TYPE" "FOXI1 WILD-TYPE" 
     TCGA-44-3396      TCGA-44-3398      TCGA-44-3918      TCGA-44-3919 
"FOXI1 WILD-TYPE" "FOXI1 WILD-TYPE" "FOXI1 WILD-TYPE" "FOXI1 WILD-TYPE" 
     TCGA-44-4112      TCGA-44-5643      TCGA-44-5645      TCGA-44-6144 
"FOXI1 WILD-TYPE" "FOXI1 WILD-TYPE" "FOXI1 WILD-TYPE" "FOXI1 WILD-TYPE" 
     TCGA-44-6145      TCGA-44-6146      TCGA-44-6147      TCGA-44-6148 
"FOXI1 WILD-TYPE" "FOXI1 WILD-TYPE" "FOXI1 WILD-TYPE" "FOXI1 WILD-TYPE" 
     TCGA-44-6774      TCGA-44-6775      TCGA-44-6776      TCGA-44-6777 
"FOXI1 WILD-TYPE" "FOXI1 WILD-TYPE" "FOXI1 WILD-TYPE" "FOXI1 WILD-TYPE" 
     TCGA-44-6778      TCGA-44-6779      TCGA-49-4486      TCGA-49-4487 
"FOXI1 WILD-TYPE" "FOXI1 WILD-TYPE" "FOXI1 WILD-TYPE" "FOXI1 WILD-TYPE" 
     TCGA-49-4488      TCGA-49-4490      TCGA-49-4494      TCGA-49-4501 
"FOXI1 WILD-TYPE" "FOXI1 WILD-TYPE" "FOXI1 WILD-TYPE" "FOXI1 WILD-TYPE" 
     TCGA-49-4505      TCGA-49-4506      TCGA-49-4507      TCGA-49-4510 
"FOXI1 WILD-TYPE" "FOXI1 WILD-TYPE" "FOXI1 WILD-TYPE" "FOXI1 WILD-TYPE" 
     TCGA-49-4512      TCGA-49-4514      TCGA-49-6742      TCGA-49-6743 
"FOXI1 WILD-TYPE" "FOXI1 WILD-TYPE" "FOXI1 WILD-TYPE" "FOXI1 WILD-TYPE" 
     TCGA-49-6744      TCGA-49-6745      TCGA-50-5044      TCGA-50-5045 
"FOXI1 WILD-TYPE" "FOXI1 WILD-TYPE" "FOXI1 WILD-TYPE" "FOXI1 WILD-TYPE" 
     TCGA-50-5049      TCGA-50-5051      TCGA-50-5055      TCGA-50-5066 
"FOXI1 WILD-TYPE" "FOXI1 WILD-TYPE" "FOXI1 WILD-TYPE" "FOXI1 WILD-TYPE" 
     TCGA-50-5068      TCGA-50-5072      TCGA-50-5930      TCGA-50-5931 
"FOXI1 WILD-TYPE" "FOXI1 WILD-TYPE" "FOXI1 WILD-TYPE" "FOXI1 WILD-TYPE" 
     TCGA-50-5932      TCGA-50-5933      TCGA-50-5935      TCGA-50-5936 
"FOXI1 WILD-TYPE" "FOXI1 WILD-TYPE" "FOXI1 WILD-TYPE" "FOXI1 WILD-TYPE" 
     TCGA-50-5939      TCGA-50-5941      TCGA-50-5942      TCGA-50-5944 
"FOXI1 WILD-TYPE" "FOXI1 WILD-TYPE" "FOXI1 WILD-TYPE" "FOXI1 WILD-TYPE" 
     TCGA-50-5946      TCGA-50-6590      TCGA-50-6591      TCGA-50-6592 
"FOXI1 WILD-TYPE"   "FOXI1 MUTATED" "FOXI1 WILD-TYPE"   "FOXI1 MUTATED" 
     TCGA-50-6593      TCGA-50-6594      TCGA-50-6595      TCGA-50-6597 
"FOXI1 WILD-TYPE" "FOXI1 WILD-TYPE" "FOXI1 WILD-TYPE" "FOXI1 WILD-TYPE" 
     TCGA-55-1592      TCGA-55-1594      TCGA-55-1595      TCGA-55-1596 
"FOXI1 WILD-TYPE" "FOXI1 WILD-TYPE" "FOXI1 WILD-TYPE" "FOXI1 WILD-TYPE" 
     TCGA-55-5899      TCGA-55-6543      TCGA-55-6642      TCGA-55-6712 
"FOXI1 WILD-TYPE" "FOXI1 WILD-TYPE" "FOXI1 WILD-TYPE" "FOXI1 WILD-TYPE" 
     TCGA-64-1676      TCGA-64-1677      TCGA-64-1678      TCGA-64-1680 
"FOXI1 WILD-TYPE" "FOXI1 WILD-TYPE" "FOXI1 WILD-TYPE" "FOXI1 WILD-TYPE" 
     TCGA-64-5774      TCGA-64-5775      TCGA-64-5778      TCGA-64-5779 
"FOXI1 WILD-TYPE" "FOXI1 WILD-TYPE" "FOXI1 WILD-TYPE" "FOXI1 WILD-TYPE" 
     TCGA-64-5781      TCGA-64-5815      TCGA-67-3770      TCGA-67-3771 
"FOXI1 WILD-TYPE" "FOXI1 WILD-TYPE" "FOXI1 WILD-TYPE" "FOXI1 WILD-TYPE" 
     TCGA-67-3772      TCGA-67-3773      TCGA-67-3774      TCGA-67-6215 
"FOXI1 WILD-TYPE" "FOXI1 WILD-TYPE" "FOXI1 WILD-TYPE" "FOXI1 WILD-TYPE" 
     TCGA-67-6216      TCGA-67-6217      TCGA-71-6725      TCGA-73-4658 
"FOXI1 WILD-TYPE" "FOXI1 WILD-TYPE" "FOXI1 WILD-TYPE" "FOXI1 WILD-TYPE" 
     TCGA-73-4659      TCGA-73-4662      TCGA-73-4666      TCGA-73-4668 
"FOXI1 WILD-TYPE" "FOXI1 WILD-TYPE" "FOXI1 WILD-TYPE" "FOXI1 WILD-TYPE" 
     TCGA-73-4670      TCGA-73-4675      TCGA-73-4676      TCGA-73-4677 
"FOXI1 WILD-TYPE" "FOXI1 WILD-TYPE" "FOXI1 WILD-TYPE" "FOXI1 WILD-TYPE" 
     TCGA-91-6828      TCGA-91-6829      TCGA-91-6831      TCGA-91-6835 
"FOXI1 WILD-TYPE" "FOXI1 WILD-TYPE" "FOXI1 WILD-TYPE" "FOXI1 WILD-TYPE" 
     TCGA-91-6836 
"FOXI1 WILD-TYPE" 
     TCGA-05-4249      TCGA-05-4250      TCGA-05-4382      TCGA-05-4384 
"FOXI1 WILD-TYPE" "FOXI1 WILD-TYPE"   "FOXI1 MUTATED" "FOXI1 WILD-TYPE" 
     TCGA-05-4390      TCGA-05-4396      TCGA-05-4397      TCGA-05-4398 
"FOXI1 WILD-TYPE" "FOXI1 WILD-TYPE" "FOXI1 WILD-TYPE" "FOXI1 WILD-TYPE" 
     TCGA-05-4402      TCGA-05-4405      TCGA-05-4415      TCGA-05-4417 
"FOXI1 WILD-TYPE" "FOXI1 WILD-TYPE" "FOXI1 WILD-TYPE" "FOXI1 WILD-TYPE" 
     TCGA-05-4418      TCGA-05-4420      TCGA-05-4424      TCGA-05-4426 
"FOXI1 WILD-TYPE" "FOXI1 WILD-TYPE" "FOXI1 WILD-TYPE"   "FOXI1 MUTATED" 
     TCGA-05-4427      TCGA-05-4430      TCGA-05-4432      TCGA-05-4433 
"FOXI1 WILD-TYPE"   "FOXI1 MUTATED" "FOXI1 WILD-TYPE" "FOXI1 WILD-TYPE" 
     TCGA-05-4434      TCGA-05-5420      TCGA-05-5423      TCGA-05-5425 
"FOXI1 WILD-TYPE" "FOXI1 WILD-TYPE" "FOXI1 WILD-TYPE" "FOXI1 WILD-TYPE" 
     TCGA-05-5429      TCGA-05-5715      TCGA-35-3615      TCGA-35-4122 
"FOXI1 WILD-TYPE" "FOXI1 WILD-TYPE" "FOXI1 WILD-TYPE" "FOXI1 WILD-TYPE" 
     TCGA-35-4123      TCGA-35-5375      TCGA-38-4625      TCGA-38-4626 
"FOXI1 WILD-TYPE" "FOXI1 WILD-TYPE" "FOXI1 WILD-TYPE" "FOXI1 WILD-TYPE" 
     TCGA-38-4627      TCGA-38-4628      TCGA-38-4629      TCGA-38-4630 
"FOXI1 WILD-TYPE" "FOXI1 WILD-TYPE"   "FOXI1 MUTATED" "FOXI1 WILD-TYPE" 
     TCGA-38-4631      TCGA-38-4632      TCGA-38-6178      TCGA-44-2655 
"FOXI1 WILD-TYPE" "FOXI1 WILD-TYPE" "FOXI1 WILD-TYPE" "FOXI1 WILD-TYPE" 
     TCGA-44-2656      TCGA-44-2657      TCGA-44-2659      TCGA-44-2661 
"FOXI1 WILD-TYPE"   "FOXI1 MUTATED" "FOXI1 WILD-TYPE" "FOXI1 WILD-TYPE" 
     TCGA-44-2662      TCGA-44-2665      TCGA-44-2666      TCGA-44-2668 
"FOXI1 WILD-TYPE" "FOXI1 WILD-TYPE" "FOXI1 WILD-TYPE" "FOXI1 WILD-TYPE" 
     TCGA-44-3396      TCGA-44-3398      TCGA-44-3918      TCGA-44-3919 
"FOXI1 WILD-TYPE" "FOXI1 WILD-TYPE" "FOXI1 WILD-TYPE" "FOXI1 WILD-TYPE" 
     TCGA-44-4112      TCGA-44-5643      TCGA-44-5645      TCGA-44-6144 
"FOXI1 WILD-TYPE" "FOXI1 WILD-TYPE" "FOXI1 WILD-TYPE" "FOXI1 WILD-TYPE" 
     TCGA-44-6145      TCGA-44-6146      TCGA-44-6147      TCGA-44-6148 
"FOXI1 WILD-TYPE" "FOXI1 WILD-TYPE" "FOXI1 WILD-TYPE" "FOXI1 WILD-TYPE" 
     TCGA-44-6774      TCGA-44-6775      TCGA-44-6776      TCGA-44-6777 
"FOXI1 WILD-TYPE" "FOXI1 WILD-TYPE" "FOXI1 WILD-TYPE" "FOXI1 WILD-TYPE" 
     TCGA-44-6778      TCGA-44-6779      TCGA-49-4486      TCGA-49-4487 
"FOXI1 WILD-TYPE" "FOXI1 WILD-TYPE" "FOXI1 WILD-TYPE" "FOXI1 WILD-TYPE" 
     TCGA-49-4488      TCGA-49-4490      TCGA-49-4494      TCGA-49-4501 
"FOXI1 WILD-TYPE" "FOXI1 WILD-TYPE" "FOXI1 WILD-TYPE" "FOXI1 WILD-TYPE" 
     TCGA-49-4505      TCGA-49-4506      TCGA-49-4507      TCGA-49-4510 
"FOXI1 WILD-TYPE" "FOXI1 WILD-TYPE" "FOXI1 WILD-TYPE" "FOXI1 WILD-TYPE" 
     TCGA-49-4512      TCGA-49-4514      TCGA-49-6742      TCGA-49-6743 
"FOXI1 WILD-TYPE" "FOXI1 WILD-TYPE" "FOXI1 WILD-TYPE" "FOXI1 WILD-TYPE" 
     TCGA-49-6744      TCGA-49-6745      TCGA-50-5044      TCGA-50-5045 
"FOXI1 WILD-TYPE" "FOXI1 WILD-TYPE" "FOXI1 WILD-TYPE" "FOXI1 WILD-TYPE" 
     TCGA-50-5049      TCGA-50-5051      TCGA-50-5055      TCGA-50-5066 
"FOXI1 WILD-TYPE" "FOXI1 WILD-TYPE" "FOXI1 WILD-TYPE" "FOXI1 WILD-TYPE" 
     TCGA-50-5068      TCGA-50-5072      TCGA-50-5930      TCGA-50-5931 
"FOXI1 WILD-TYPE" "FOXI1 WILD-TYPE" "FOXI1 WILD-TYPE" "FOXI1 WILD-TYPE" 
     TCGA-50-5932      TCGA-50-5933      TCGA-50-5935      TCGA-50-5936 
"FOXI1 WILD-TYPE" "FOXI1 WILD-TYPE" "FOXI1 WILD-TYPE" "FOXI1 WILD-TYPE" 
     TCGA-50-5939      TCGA-50-5941      TCGA-50-5942      TCGA-50-5944 
"FOXI1 WILD-TYPE" "FOXI1 WILD-TYPE" "FOXI1 WILD-TYPE" "FOXI1 WILD-TYPE" 
     TCGA-50-5946      TCGA-50-6590      TCGA-50-6591      TCGA-50-6592 
"FOXI1 WILD-TYPE"   "FOXI1 MUTATED" "FOXI1 WILD-TYPE"   "FOXI1 MUTATED" 
     TCGA-50-6593      TCGA-50-6594      TCGA-50-6595      TCGA-50-6597 
"FOXI1 WILD-TYPE" "FOXI1 WILD-TYPE" "FOXI1 WILD-TYPE" "FOXI1 WILD-TYPE" 
     TCGA-55-1592      TCGA-55-1594      TCGA-55-1595      TCGA-55-1596 
"FOXI1 WILD-TYPE" "FOXI1 WILD-TYPE" "FOXI1 WILD-TYPE" "FOXI1 WILD-TYPE" 
     TCGA-55-5899      TCGA-55-6543      TCGA-55-6642      TCGA-55-6712 
"FOXI1 WILD-TYPE" "FOXI1 WILD-TYPE" "FOXI1 WILD-TYPE" "FOXI1 WILD-TYPE" 
     TCGA-64-1676      TCGA-64-1677      TCGA-64-1678      TCGA-64-1680 
"FOXI1 WILD-TYPE" "FOXI1 WILD-TYPE" "FOXI1 WILD-TYPE" "FOXI1 WILD-TYPE" 
     TCGA-64-5774      TCGA-64-5775      TCGA-64-5778      TCGA-64-5779 
"FOXI1 WILD-TYPE" "FOXI1 WILD-TYPE" "FOXI1 WILD-TYPE" "FOXI1 WILD-TYPE" 
     TCGA-64-5781      TCGA-64-5815      TCGA-67-3770      TCGA-67-3771 
"FOXI1 WILD-TYPE" "FOXI1 WILD-TYPE" "FOXI1 WILD-TYPE" "FOXI1 WILD-TYPE" 
     TCGA-67-3772      TCGA-67-3773      TCGA-67-3774      TCGA-67-6215 
"FOXI1 WILD-TYPE" "FOXI1 WILD-TYPE" "FOXI1 WILD-TYPE" "FOXI1 WILD-TYPE" 
     TCGA-67-6216      TCGA-67-6217      TCGA-71-6725      TCGA-73-4658 
"FOXI1 WILD-TYPE" "FOXI1 WILD-TYPE" "FOXI1 WILD-TYPE" "FOXI1 WILD-TYPE" 
     TCGA-73-4659      TCGA-73-4662      TCGA-73-4666      TCGA-73-4668 
"FOXI1 WILD-TYPE" "FOXI1 WILD-TYPE" "FOXI1 WILD-TYPE" "FOXI1 WILD-TYPE" 
     TCGA-73-4670      TCGA-73-4675      TCGA-73-4676      TCGA-73-4677 
"FOXI1 WILD-TYPE" "FOXI1 WILD-TYPE" "FOXI1 WILD-TYPE" "FOXI1 WILD-TYPE" 
     TCGA-91-6828      TCGA-91-6829      TCGA-91-6831      TCGA-91-6835 
"FOXI1 WILD-TYPE" "FOXI1 WILD-TYPE" "FOXI1 WILD-TYPE" "FOXI1 WILD-TYPE" 
     TCGA-91-6836 
"FOXI1 WILD-TYPE" 
     TCGA-05-4249      TCGA-05-4250      TCGA-05-4382      TCGA-05-4384 
"FOXI1 WILD-TYPE" "FOXI1 WILD-TYPE"   "FOXI1 MUTATED" "FOXI1 WILD-TYPE" 
     TCGA-05-4390      TCGA-05-4396      TCGA-05-4397      TCGA-05-4398 
"FOXI1 WILD-TYPE" "FOXI1 WILD-TYPE" "FOXI1 WILD-TYPE" "FOXI1 WILD-TYPE" 
     TCGA-05-4402      TCGA-05-4405      TCGA-05-4415      TCGA-05-4417 
"FOXI1 WILD-TYPE" "FOXI1 WILD-TYPE" "FOXI1 WILD-TYPE" "FOXI1 WILD-TYPE" 
     TCGA-05-4418      TCGA-05-4420      TCGA-05-4424      TCGA-05-4426 
"FOXI1 WILD-TYPE" "FOXI1 WILD-TYPE" "FOXI1 WILD-TYPE"   "FOXI1 MUTATED" 
     TCGA-05-4427      TCGA-05-4430      TCGA-05-4432      TCGA-05-4433 
"FOXI1 WILD-TYPE"   "FOXI1 MUTATED" "FOXI1 WILD-TYPE" "FOXI1 WILD-TYPE" 
     TCGA-05-4434      TCGA-05-5420      TCGA-05-5423      TCGA-05-5425 
"FOXI1 WILD-TYPE" "FOXI1 WILD-TYPE" "FOXI1 WILD-TYPE" "FOXI1 WILD-TYPE" 
     TCGA-05-5429      TCGA-05-5715      TCGA-35-3615      TCGA-35-4122 
"FOXI1 WILD-TYPE" "FOXI1 WILD-TYPE" "FOXI1 WILD-TYPE" "FOXI1 WILD-TYPE" 
     TCGA-35-4123      TCGA-35-5375      TCGA-38-4625      TCGA-38-4626 
"FOXI1 WILD-TYPE" "FOXI1 WILD-TYPE" "FOXI1 WILD-TYPE" "FOXI1 WILD-TYPE" 
     TCGA-38-4627      TCGA-38-4628      TCGA-38-4629      TCGA-38-4630 
"FOXI1 WILD-TYPE" "FOXI1 WILD-TYPE"   "FOXI1 MUTATED" "FOXI1 WILD-TYPE" 
     TCGA-38-4631      TCGA-38-4632      TCGA-38-6178      TCGA-44-2655 
"FOXI1 WILD-TYPE" "FOXI1 WILD-TYPE" "FOXI1 WILD-TYPE" "FOXI1 WILD-TYPE" 
     TCGA-44-2656      TCGA-44-2657      TCGA-44-2659      TCGA-44-2661 
"FOXI1 WILD-TYPE"   "FOXI1 MUTATED" "FOXI1 WILD-TYPE" "FOXI1 WILD-TYPE" 
     TCGA-44-2662      TCGA-44-2665      TCGA-44-2666      TCGA-44-2668 
"FOXI1 WILD-TYPE" "FOXI1 WILD-TYPE" "FOXI1 WILD-TYPE" "FOXI1 WILD-TYPE" 
     TCGA-44-3396      TCGA-44-3398      TCGA-44-3918      TCGA-44-3919 
"FOXI1 WILD-TYPE" "FOXI1 WILD-TYPE" "FOXI1 WILD-TYPE" "FOXI1 WILD-TYPE" 
     TCGA-44-4112      TCGA-44-5643      TCGA-44-5645      TCGA-44-6144 
"FOXI1 WILD-TYPE" "FOXI1 WILD-TYPE" "FOXI1 WILD-TYPE" "FOXI1 WILD-TYPE" 
     TCGA-44-6145      TCGA-44-6146      TCGA-44-6147      TCGA-44-6148 
"FOXI1 WILD-TYPE" "FOXI1 WILD-TYPE" "FOXI1 WILD-TYPE" "FOXI1 WILD-TYPE" 
     TCGA-44-6774      TCGA-44-6775      TCGA-44-6776      TCGA-44-6777 
"FOXI1 WILD-TYPE" "FOXI1 WILD-TYPE" "FOXI1 WILD-TYPE" "FOXI1 WILD-TYPE" 
     TCGA-44-6778      TCGA-44-6779      TCGA-49-4486      TCGA-49-4487 
"FOXI1 WILD-TYPE" "FOXI1 WILD-TYPE" "FOXI1 WILD-TYPE" "FOXI1 WILD-TYPE" 
     TCGA-49-4488      TCGA-49-4490      TCGA-49-4494      TCGA-49-4501 
"FOXI1 WILD-TYPE" "FOXI1 WILD-TYPE" "FOXI1 WILD-TYPE" "FOXI1 WILD-TYPE" 
     TCGA-49-4505      TCGA-49-4506      TCGA-49-4507      TCGA-49-4510 
"FOXI1 WILD-TYPE" "FOXI1 WILD-TYPE" "FOXI1 WILD-TYPE" "FOXI1 WILD-TYPE" 
     TCGA-49-4512      TCGA-49-4514      TCGA-49-6742      TCGA-49-6743 
"FOXI1 WILD-TYPE" "FOXI1 WILD-TYPE" "FOXI1 WILD-TYPE" "FOXI1 WILD-TYPE" 
     TCGA-49-6744      TCGA-49-6745      TCGA-50-5044      TCGA-50-5045 
"FOXI1 WILD-TYPE" "FOXI1 WILD-TYPE" "FOXI1 WILD-TYPE" "FOXI1 WILD-TYPE" 
     TCGA-50-5049      TCGA-50-5051      TCGA-50-5055      TCGA-50-5066 
"FOXI1 WILD-TYPE" "FOXI1 WILD-TYPE" "FOXI1 WILD-TYPE" "FOXI1 WILD-TYPE" 
     TCGA-50-5068      TCGA-50-5072      TCGA-50-5930      TCGA-50-5931 
"FOXI1 WILD-TYPE" "FOXI1 WILD-TYPE" "FOXI1 WILD-TYPE" "FOXI1 WILD-TYPE" 
     TCGA-50-5932      TCGA-50-5933      TCGA-50-5935      TCGA-50-5936 
"FOXI1 WILD-TYPE" "FOXI1 WILD-TYPE" "FOXI1 WILD-TYPE" "FOXI1 WILD-TYPE" 
     TCGA-50-5939      TCGA-50-5941      TCGA-50-5942      TCGA-50-5944 
"FOXI1 WILD-TYPE" "FOXI1 WILD-TYPE" "FOXI1 WILD-TYPE" "FOXI1 WILD-TYPE" 
     TCGA-50-5946      TCGA-50-6590      TCGA-50-6591      TCGA-50-6592 
"FOXI1 WILD-TYPE"   "FOXI1 MUTATED" "FOXI1 WILD-TYPE"   "FOXI1 MUTATED" 
     TCGA-50-6593      TCGA-50-6594      TCGA-50-6595      TCGA-50-6597 
"FOXI1 WILD-TYPE" "FOXI1 WILD-TYPE" "FOXI1 WILD-TYPE" "FOXI1 WILD-TYPE" 
     TCGA-55-1592      TCGA-55-1594      TCGA-55-1595      TCGA-55-1596 
"FOXI1 WILD-TYPE" "FOXI1 WILD-TYPE" "FOXI1 WILD-TYPE" "FOXI1 WILD-TYPE" 
     TCGA-55-5899      TCGA-55-6543      TCGA-55-6642      TCGA-55-6712 
"FOXI1 WILD-TYPE" "FOXI1 WILD-TYPE" "FOXI1 WILD-TYPE" "FOXI1 WILD-TYPE" 
     TCGA-64-1676      TCGA-64-1677      TCGA-64-1678      TCGA-64-1680 
"FOXI1 WILD-TYPE" "FOXI1 WILD-TYPE" "FOXI1 WILD-TYPE" "FOXI1 WILD-TYPE" 
     TCGA-64-5774      TCGA-64-5775      TCGA-64-5778      TCGA-64-5779 
"FOXI1 WILD-TYPE" "FOXI1 WILD-TYPE" "FOXI1 WILD-TYPE" "FOXI1 WILD-TYPE" 
     TCGA-64-5781      TCGA-64-5815      TCGA-67-3770      TCGA-67-3771 
"FOXI1 WILD-TYPE" "FOXI1 WILD-TYPE" "FOXI1 WILD-TYPE" "FOXI1 WILD-TYPE" 
     TCGA-67-3772      TCGA-67-3773      TCGA-67-3774      TCGA-67-6215 
"FOXI1 WILD-TYPE" "FOXI1 WILD-TYPE" "FOXI1 WILD-TYPE" "FOXI1 WILD-TYPE" 
     TCGA-67-6216      TCGA-67-6217      TCGA-71-6725      TCGA-73-4658 
"FOXI1 WILD-TYPE" "FOXI1 WILD-TYPE" "FOXI1 WILD-TYPE" "FOXI1 WILD-TYPE" 
     TCGA-73-4659      TCGA-73-4662      TCGA-73-4666      TCGA-73-4668 
"FOXI1 WILD-TYPE" "FOXI1 WILD-TYPE" "FOXI1 WILD-TYPE" "FOXI1 WILD-TYPE" 
     TCGA-73-4670      TCGA-73-4675      TCGA-73-4676      TCGA-73-4677 
"FOXI1 WILD-TYPE" "FOXI1 WILD-TYPE" "FOXI1 WILD-TYPE" "FOXI1 WILD-TYPE" 
     TCGA-91-6828      TCGA-91-6829      TCGA-91-6831      TCGA-91-6835 
"FOXI1 WILD-TYPE" "FOXI1 WILD-TYPE" "FOXI1 WILD-TYPE" "FOXI1 WILD-TYPE" 
     TCGA-91-6836 
"FOXI1 WILD-TYPE" 
[1] "hr=" "1.1"
D193V2, continuous
D193V3, binary
[1] "tbl2"
                 cls
clus              [,1] [,2]
  FOXI1 MUTATED      4    4
  FOXI1 WILD-TYPE   89   75
        clus
vv       FOXI1 MUTATED FOXI1 WILD-TYPE
  FEMALE             4              89
  MALE               4              75
D193V4, continuous
D193V5, multiclass
D193V6, multiclass
    clus
vv   FOXI1 MUTATED FOXI1 WILD-TYPE
  T1             0              41
  T2             7             101
  T3             1              13
  T4             0               8
D193V7, multiclass
       clus
vv      FOXI1 MUTATED FOXI1 WILD-TYPE
  N0                7              88
  N1                0              37
  N2+N3             0              35
D193V8, multiclass
    clus
vv   FOXI1 MUTATED FOXI1 WILD-TYPE
  M0             8             129
  M1             0               9
  MX             0              22
D193V9, multiclass
     clus
vv    FOXI1 MUTATED FOXI1 WILD-TYPE
  I               7              81
  II              1              32
  III             0              39
  IV              0               9
D193V10, binary
[1] "tbl2"
                 cls
clus              [,1] [,2]
  FOXI1 MUTATED      0    8
  FOXI1 WILD-TYPE   16  148
     clus
vv    FOXI1 MUTATED FOXI1 WILD-TYPE
  NO              0              16
  YES             8             148
D193V11, continuous
D193V12, continuous
D193V13, multiclass
                                             clus
vv                                            FOXI1 MUTATED FOXI1 WILD-TYPE
  CURRENT REFORMED SMOKER FOR < OR = 15 YEARS             7              55
  CURRENT REFORMED SMOKER FOR > 15 YEARS                  1              45
  CURRENT SMOKER                                          0              28
  LIFELONG NON-SMOKER                                     0              24
D193V14, continuous
[1] "Remove cluster labels:" "FOXI1 MUTATED"         
clus
  FOXI1 MUTATED FOXI1 WILD-TYPE 
              1              67 
     TCGA-05-4384      TCGA-05-4390      TCGA-05-4396      TCGA-05-4405 
"FOXI1 WILD-TYPE" "FOXI1 WILD-TYPE" "FOXI1 WILD-TYPE" "FOXI1 WILD-TYPE" 
     TCGA-05-4410      TCGA-05-4415      TCGA-05-4417      TCGA-05-4424 
"FOXI1 WILD-TYPE" "FOXI1 WILD-TYPE" "FOXI1 WILD-TYPE" "FOXI1 WILD-TYPE" 
     TCGA-05-4427      TCGA-05-4433      TCGA-05-5420      TCGA-05-5423 
"FOXI1 WILD-TYPE" "FOXI1 WILD-TYPE" "FOXI1 WILD-TYPE" "FOXI1 WILD-TYPE" 
     TCGA-05-5425      TCGA-05-5428      TCGA-35-4122      TCGA-35-4123 
"FOXI1 WILD-TYPE" "FOXI1 WILD-TYPE" "FOXI1 WILD-TYPE" "FOXI1 WILD-TYPE" 
     TCGA-35-5375      TCGA-38-4625      TCGA-38-4626      TCGA-44-2655 
"FOXI1 WILD-TYPE" "FOXI1 WILD-TYPE" "FOXI1 WILD-TYPE" "FOXI1 WILD-TYPE" 
     TCGA-44-2656      TCGA-44-2659      TCGA-44-2662      TCGA-44-2666 
"FOXI1 WILD-TYPE" "FOXI1 WILD-TYPE" "FOXI1 WILD-TYPE" "FOXI1 WILD-TYPE" 
     TCGA-44-2668      TCGA-44-3396      TCGA-44-3398      TCGA-44-3918 
"FOXI1 WILD-TYPE" "FOXI1 WILD-TYPE" "FOXI1 WILD-TYPE" "FOXI1 WILD-TYPE" 
     TCGA-44-4112      TCGA-44-5645      TCGA-44-6144      TCGA-44-6145 
"FOXI1 WILD-TYPE" "FOXI1 WILD-TYPE" "FOXI1 WILD-TYPE" "FOXI1 WILD-TYPE" 
     TCGA-44-6147      TCGA-44-6148      TCGA-44-6774      TCGA-44-6775 
"FOXI1 WILD-TYPE" "FOXI1 WILD-TYPE" "FOXI1 WILD-TYPE" "FOXI1 WILD-TYPE" 
     TCGA-44-6776      TCGA-44-6777      TCGA-44-6778      TCGA-44-6779 
"FOXI1 WILD-TYPE" "FOXI1 WILD-TYPE" "FOXI1 WILD-TYPE" "FOXI1 WILD-TYPE" 
     TCGA-49-4486      TCGA-49-4494      TCGA-49-4505      TCGA-55-1592 
"FOXI1 WILD-TYPE" "FOXI1 WILD-TYPE" "FOXI1 WILD-TYPE" "FOXI1 WILD-TYPE" 
     TCGA-55-1594      TCGA-55-1595      TCGA-55-1596      TCGA-55-5899 
"FOXI1 WILD-TYPE" "FOXI1 WILD-TYPE" "FOXI1 WILD-TYPE" "FOXI1 WILD-TYPE" 
     TCGA-55-6642      TCGA-55-6712      TCGA-64-1677      TCGA-64-1678 
"FOXI1 WILD-TYPE" "FOXI1 WILD-TYPE" "FOXI1 WILD-TYPE" "FOXI1 WILD-TYPE" 
     TCGA-64-1680      TCGA-64-5774      TCGA-64-5775      TCGA-64-5778 
"FOXI1 WILD-TYPE" "FOXI1 WILD-TYPE" "FOXI1 WILD-TYPE" "FOXI1 WILD-TYPE" 
     TCGA-64-5779      TCGA-64-5781      TCGA-73-4659      TCGA-73-4662 
"FOXI1 WILD-TYPE" "FOXI1 WILD-TYPE" "FOXI1 WILD-TYPE" "FOXI1 WILD-TYPE" 
     TCGA-73-4666      TCGA-73-4668      TCGA-73-4670      TCGA-73-4675 
"FOXI1 WILD-TYPE" "FOXI1 WILD-TYPE" "FOXI1 WILD-TYPE" "FOXI1 WILD-TYPE" 
     TCGA-73-4676      TCGA-91-6829      TCGA-91-6836 
"FOXI1 WILD-TYPE" "FOXI1 WILD-TYPE" "FOXI1 WILD-TYPE" 

Clustering(194) Variable = HOXB1 MUTATION ANALYSIS
D194V1, survival
                 sevent
clus2              0  1
  HOXB1 MUTATED    5  1
  HOXB1 WILD-TYPE 94 49
  HOXB1 MUTATED HOXB1 WILD-TYPE 
              6             143 
  HOXB1 MUTATED HOXB1 WILD-TYPE 
              1              49 
$`HOXB1 MUTATED`
TCGA-38-4625 TCGA-44-2662 TCGA-55-1592 TCGA-64-5781 TCGA-67-3774 TCGA-73-4666 
       47.61        15.78        23.05        39.52         0.59        20.28 

$`HOXB1 WILD-TYPE`
TCGA-05-4249 TCGA-05-4250 TCGA-05-4382 TCGA-05-4384 TCGA-05-4390 TCGA-05-4396 
       38.07         3.98        19.92        14.01        37.02         9.96 
TCGA-05-4397 TCGA-05-4398 TCGA-05-4402 TCGA-05-4405 TCGA-05-4415 TCGA-05-4417 
       24.03        47.05         8.02        20.05         2.96        14.93 
TCGA-05-4418 TCGA-05-4420 TCGA-05-4424 TCGA-05-4426 TCGA-05-4427 TCGA-05-4430 
        8.98        29.95        30.02        26.01        26.01        25.02 
TCGA-05-4432 TCGA-05-4433 TCGA-05-4434 TCGA-05-5420 TCGA-05-5423 TCGA-05-5425 
       25.02        24.00        15.02         1.02         4.96         2.96 
TCGA-05-5429 TCGA-05-5715 TCGA-35-3615 TCGA-35-4122 TCGA-35-4123 TCGA-35-5375 
        0.99         2.04         0.46         7.36         5.95         8.68 
TCGA-38-4626 TCGA-38-4627 TCGA-38-4628 TCGA-38-4629 TCGA-38-4630 TCGA-38-4631 
       85.32        37.71        49.02        28.37        35.28        11.64 
TCGA-38-4632 TCGA-38-6178 TCGA-44-2655 TCGA-44-2656 TCGA-44-2657 TCGA-44-2659 
       44.61         5.19        18.87        19.10        13.15        17.39 
TCGA-44-2661 TCGA-44-2665 TCGA-44-2666 TCGA-44-2668 TCGA-44-3396 TCGA-44-3398 
        3.39        13.15         3.19         8.09        10.22         8.32 
TCGA-44-3918 TCGA-44-3919 TCGA-44-4112 TCGA-44-5643 TCGA-44-5645 TCGA-44-6144 
        6.44         6.21         4.60         3.48         6.84         0.30 
TCGA-44-6145 TCGA-44-6146 TCGA-44-6147 TCGA-44-6148 TCGA-44-6774 TCGA-44-6775 
        3.35         9.93         7.76         3.12         5.42         2.70 
TCGA-44-6776 TCGA-44-6777 TCGA-44-6778 TCGA-44-6779 TCGA-49-4486 TCGA-49-4487 
       63.72        32.45        36.49        16.41        76.21        28.11 
TCGA-49-4488 TCGA-49-4490 TCGA-49-4494 TCGA-49-4501 TCGA-49-4505 TCGA-49-4506 
       28.57        12.66        35.54        46.72        14.07        32.84 
TCGA-49-4507 TCGA-49-4510 TCGA-49-4512 TCGA-49-4514 TCGA-49-6742 TCGA-49-6743 
        8.81        29.46        29.75        43.20        15.02        12.13 
TCGA-49-6744 TCGA-49-6745 TCGA-50-5044 TCGA-50-5045 TCGA-50-5049 TCGA-50-5051 
       12.99         4.93        20.48        71.47        48.82        14.96 
TCGA-50-5055 TCGA-50-5066 TCGA-50-5068 TCGA-50-5072 TCGA-50-5930 TCGA-50-5931 
       25.81         9.76        49.28         8.05         9.27         8.78 
TCGA-50-5932 TCGA-50-5933 TCGA-50-5935 TCGA-50-5936 TCGA-50-5939 TCGA-50-5941 
       35.87        77.88        21.47         8.45        15.12         9.37 
TCGA-50-5942 TCGA-50-5944 TCGA-50-5946 TCGA-50-6590 TCGA-50-6591 TCGA-50-6592 
        4.44        12.26        11.47        42.31         3.88        25.51 
TCGA-50-6593 TCGA-50-6594 TCGA-50-6595 TCGA-50-6597 TCGA-55-1594 TCGA-55-1595 
       11.05        12.16         6.21        33.37        38.73        48.62 
TCGA-55-1596 TCGA-55-5899 TCGA-55-6543 TCGA-55-6642 TCGA-55-6712 TCGA-64-1676 
       45.17         2.86         0.07        32.61         0.79        56.81 
TCGA-64-1677 TCGA-64-1678 TCGA-64-1680 TCGA-64-5774 TCGA-64-5775 TCGA-64-5778 
       20.65        39.09        37.02        83.84         0.10        30.44 
TCGA-64-5779 TCGA-64-5815 TCGA-67-3770 TCGA-67-3771 TCGA-67-3772 TCGA-67-3773 
       16.67         7.33         0.99         1.97         0.59         2.04 
TCGA-67-6215 TCGA-67-6216 TCGA-67-6217 TCGA-71-6725 TCGA-73-4658 TCGA-73-4659 
        0.89         0.69        13.87         2.01        52.57        23.38 
TCGA-73-4662 TCGA-73-4668 TCGA-73-4670 TCGA-73-4675 TCGA-73-4676 TCGA-73-4677 
       29.95        15.35         0.46         1.32         4.01         1.25 
TCGA-91-6828 TCGA-91-6829 TCGA-91-6831 TCGA-91-6835 TCGA-91-6836 
        1.22        41.33         1.28         1.15         0.36 

  HOXB1 MUTATED HOXB1 WILD-TYPE 
           0.59            0.07 
  HOXB1 MUTATED HOXB1 WILD-TYPE 
          47.61           85.32 
  HOXB1 MUTATED HOXB1 WILD-TYPE 
         21.665          13.150 
[1] "0.6 - 47.6 (21.7)" "0.1 - 85.3 (13.2)"
     TCGA-05-4249      TCGA-05-4250      TCGA-05-4382      TCGA-05-4384 
"HOXB1 WILD-TYPE" "HOXB1 WILD-TYPE" "HOXB1 WILD-TYPE" "HOXB1 WILD-TYPE" 
     TCGA-05-4390      TCGA-05-4396      TCGA-05-4397      TCGA-05-4398 
"HOXB1 WILD-TYPE" "HOXB1 WILD-TYPE" "HOXB1 WILD-TYPE" "HOXB1 WILD-TYPE" 
     TCGA-05-4402      TCGA-05-4405      TCGA-05-4415      TCGA-05-4417 
"HOXB1 WILD-TYPE" "HOXB1 WILD-TYPE" "HOXB1 WILD-TYPE" "HOXB1 WILD-TYPE" 
     TCGA-05-4418      TCGA-05-4420      TCGA-05-4424      TCGA-05-4426 
"HOXB1 WILD-TYPE" "HOXB1 WILD-TYPE" "HOXB1 WILD-TYPE" "HOXB1 WILD-TYPE" 
     TCGA-05-4427      TCGA-05-4430      TCGA-05-4432      TCGA-05-4433 
"HOXB1 WILD-TYPE" "HOXB1 WILD-TYPE" "HOXB1 WILD-TYPE" "HOXB1 WILD-TYPE" 
     TCGA-05-4434      TCGA-05-5420      TCGA-05-5423      TCGA-05-5425 
"HOXB1 WILD-TYPE" "HOXB1 WILD-TYPE" "HOXB1 WILD-TYPE" "HOXB1 WILD-TYPE" 
     TCGA-05-5429      TCGA-05-5715      TCGA-35-3615      TCGA-35-4122 
"HOXB1 WILD-TYPE" "HOXB1 WILD-TYPE" "HOXB1 WILD-TYPE" "HOXB1 WILD-TYPE" 
     TCGA-35-4123      TCGA-35-5375      TCGA-38-4625      TCGA-38-4626 
"HOXB1 WILD-TYPE" "HOXB1 WILD-TYPE"   "HOXB1 MUTATED" "HOXB1 WILD-TYPE" 
     TCGA-38-4627      TCGA-38-4628      TCGA-38-4629      TCGA-38-4630 
"HOXB1 WILD-TYPE" "HOXB1 WILD-TYPE" "HOXB1 WILD-TYPE" "HOXB1 WILD-TYPE" 
     TCGA-38-4631      TCGA-38-4632      TCGA-38-6178      TCGA-44-2655 
"HOXB1 WILD-TYPE" "HOXB1 WILD-TYPE" "HOXB1 WILD-TYPE" "HOXB1 WILD-TYPE" 
     TCGA-44-2656      TCGA-44-2657      TCGA-44-2659      TCGA-44-2661 
"HOXB1 WILD-TYPE" "HOXB1 WILD-TYPE" "HOXB1 WILD-TYPE" "HOXB1 WILD-TYPE" 
     TCGA-44-2662      TCGA-44-2665      TCGA-44-2666      TCGA-44-2668 
  "HOXB1 MUTATED" "HOXB1 WILD-TYPE" "HOXB1 WILD-TYPE" "HOXB1 WILD-TYPE" 
     TCGA-44-3396      TCGA-44-3398      TCGA-44-3918      TCGA-44-3919 
"HOXB1 WILD-TYPE" "HOXB1 WILD-TYPE" "HOXB1 WILD-TYPE" "HOXB1 WILD-TYPE" 
     TCGA-44-4112      TCGA-44-5643      TCGA-44-5645      TCGA-44-6144 
"HOXB1 WILD-TYPE" "HOXB1 WILD-TYPE" "HOXB1 WILD-TYPE" "HOXB1 WILD-TYPE" 
     TCGA-44-6145      TCGA-44-6146      TCGA-44-6147      TCGA-44-6148 
"HOXB1 WILD-TYPE" "HOXB1 WILD-TYPE" "HOXB1 WILD-TYPE" "HOXB1 WILD-TYPE" 
     TCGA-44-6774      TCGA-44-6775      TCGA-44-6776      TCGA-44-6777 
"HOXB1 WILD-TYPE" "HOXB1 WILD-TYPE" "HOXB1 WILD-TYPE" "HOXB1 WILD-TYPE" 
     TCGA-44-6778      TCGA-44-6779      TCGA-49-4486      TCGA-49-4487 
"HOXB1 WILD-TYPE" "HOXB1 WILD-TYPE" "HOXB1 WILD-TYPE" "HOXB1 WILD-TYPE" 
     TCGA-49-4488      TCGA-49-4490      TCGA-49-4494      TCGA-49-4501 
"HOXB1 WILD-TYPE" "HOXB1 WILD-TYPE" "HOXB1 WILD-TYPE" "HOXB1 WILD-TYPE" 
     TCGA-49-4505      TCGA-49-4506      TCGA-49-4507      TCGA-49-4510 
"HOXB1 WILD-TYPE" "HOXB1 WILD-TYPE" "HOXB1 WILD-TYPE" "HOXB1 WILD-TYPE" 
     TCGA-49-4512      TCGA-49-4514      TCGA-49-6742      TCGA-49-6743 
"HOXB1 WILD-TYPE" "HOXB1 WILD-TYPE" "HOXB1 WILD-TYPE" "HOXB1 WILD-TYPE" 
     TCGA-49-6744      TCGA-49-6745      TCGA-50-5044      TCGA-50-5045 
"HOXB1 WILD-TYPE" "HOXB1 WILD-TYPE" "HOXB1 WILD-TYPE" "HOXB1 WILD-TYPE" 
     TCGA-50-5049      TCGA-50-5051      TCGA-50-5055      TCGA-50-5066 
"HOXB1 WILD-TYPE" "HOXB1 WILD-TYPE" "HOXB1 WILD-TYPE" "HOXB1 WILD-TYPE" 
     TCGA-50-5068      TCGA-50-5072      TCGA-50-5930      TCGA-50-5931 
"HOXB1 WILD-TYPE" "HOXB1 WILD-TYPE" "HOXB1 WILD-TYPE" "HOXB1 WILD-TYPE" 
     TCGA-50-5932      TCGA-50-5933      TCGA-50-5935      TCGA-50-5936 
"HOXB1 WILD-TYPE" "HOXB1 WILD-TYPE" "HOXB1 WILD-TYPE" "HOXB1 WILD-TYPE" 
     TCGA-50-5939      TCGA-50-5941      TCGA-50-5942      TCGA-50-5944 
"HOXB1 WILD-TYPE" "HOXB1 WILD-TYPE" "HOXB1 WILD-TYPE" "HOXB1 WILD-TYPE" 
     TCGA-50-5946      TCGA-50-6590      TCGA-50-6591      TCGA-50-6592 
"HOXB1 WILD-TYPE" "HOXB1 WILD-TYPE" "HOXB1 WILD-TYPE" "HOXB1 WILD-TYPE" 
     TCGA-50-6593      TCGA-50-6594      TCGA-50-6595      TCGA-50-6597 
"HOXB1 WILD-TYPE" "HOXB1 WILD-TYPE" "HOXB1 WILD-TYPE" "HOXB1 WILD-TYPE" 
     TCGA-55-1592      TCGA-55-1594      TCGA-55-1595      TCGA-55-1596 
  "HOXB1 MUTATED" "HOXB1 WILD-TYPE" "HOXB1 WILD-TYPE" "HOXB1 WILD-TYPE" 
     TCGA-55-5899      TCGA-55-6543      TCGA-55-6642      TCGA-55-6712 
"HOXB1 WILD-TYPE" "HOXB1 WILD-TYPE" "HOXB1 WILD-TYPE" "HOXB1 WILD-TYPE" 
     TCGA-64-1676      TCGA-64-1677      TCGA-64-1678      TCGA-64-1680 
"HOXB1 WILD-TYPE" "HOXB1 WILD-TYPE" "HOXB1 WILD-TYPE" "HOXB1 WILD-TYPE" 
     TCGA-64-5774      TCGA-64-5775      TCGA-64-5778      TCGA-64-5779 
"HOXB1 WILD-TYPE" "HOXB1 WILD-TYPE" "HOXB1 WILD-TYPE" "HOXB1 WILD-TYPE" 
     TCGA-64-5781      TCGA-64-5815      TCGA-67-3770      TCGA-67-3771 
  "HOXB1 MUTATED" "HOXB1 WILD-TYPE" "HOXB1 WILD-TYPE" "HOXB1 WILD-TYPE" 
     TCGA-67-3772      TCGA-67-3773      TCGA-67-3774      TCGA-67-6215 
"HOXB1 WILD-TYPE" "HOXB1 WILD-TYPE"   "HOXB1 MUTATED" "HOXB1 WILD-TYPE" 
     TCGA-67-6216      TCGA-67-6217      TCGA-71-6725      TCGA-73-4658 
"HOXB1 WILD-TYPE" "HOXB1 WILD-TYPE" "HOXB1 WILD-TYPE" "HOXB1 WILD-TYPE" 
     TCGA-73-4659      TCGA-73-4662      TCGA-73-4666      TCGA-73-4668 
"HOXB1 WILD-TYPE" "HOXB1 WILD-TYPE"   "HOXB1 MUTATED" "HOXB1 WILD-TYPE" 
     TCGA-73-4670      TCGA-73-4675      TCGA-73-4676      TCGA-73-4677 
"HOXB1 WILD-TYPE" "HOXB1 WILD-TYPE" "HOXB1 WILD-TYPE" "HOXB1 WILD-TYPE" 
     TCGA-91-6828      TCGA-91-6829      TCGA-91-6831      TCGA-91-6835 
"HOXB1 WILD-TYPE" "HOXB1 WILD-TYPE" "HOXB1 WILD-TYPE" "HOXB1 WILD-TYPE" 
     TCGA-91-6836 
"HOXB1 WILD-TYPE" 
     TCGA-05-4249      TCGA-05-4250      TCGA-05-4382      TCGA-05-4384 
"HOXB1 WILD-TYPE" "HOXB1 WILD-TYPE" "HOXB1 WILD-TYPE" "HOXB1 WILD-TYPE" 
     TCGA-05-4390      TCGA-05-4396      TCGA-05-4397      TCGA-05-4398 
"HOXB1 WILD-TYPE" "HOXB1 WILD-TYPE" "HOXB1 WILD-TYPE" "HOXB1 WILD-TYPE" 
     TCGA-05-4402      TCGA-05-4405      TCGA-05-4415      TCGA-05-4417 
"HOXB1 WILD-TYPE" "HOXB1 WILD-TYPE" "HOXB1 WILD-TYPE" "HOXB1 WILD-TYPE" 
     TCGA-05-4418      TCGA-05-4420      TCGA-05-4424      TCGA-05-4426 
"HOXB1 WILD-TYPE" "HOXB1 WILD-TYPE" "HOXB1 WILD-TYPE" "HOXB1 WILD-TYPE" 
     TCGA-05-4427      TCGA-05-4430      TCGA-05-4432      TCGA-05-4433 
"HOXB1 WILD-TYPE" "HOXB1 WILD-TYPE" "HOXB1 WILD-TYPE" "HOXB1 WILD-TYPE" 
     TCGA-05-4434      TCGA-05-5420      TCGA-05-5423      TCGA-05-5425 
"HOXB1 WILD-TYPE" "HOXB1 WILD-TYPE" "HOXB1 WILD-TYPE" "HOXB1 WILD-TYPE" 
     TCGA-05-5429      TCGA-05-5715      TCGA-35-3615      TCGA-35-4122 
"HOXB1 WILD-TYPE" "HOXB1 WILD-TYPE" "HOXB1 WILD-TYPE" "HOXB1 WILD-TYPE" 
     TCGA-35-4123      TCGA-35-5375      TCGA-38-4625      TCGA-38-4626 
"HOXB1 WILD-TYPE" "HOXB1 WILD-TYPE"   "HOXB1 MUTATED" "HOXB1 WILD-TYPE" 
     TCGA-38-4627      TCGA-38-4628      TCGA-38-4629      TCGA-38-4630 
"HOXB1 WILD-TYPE" "HOXB1 WILD-TYPE" "HOXB1 WILD-TYPE" "HOXB1 WILD-TYPE" 
     TCGA-38-4631      TCGA-38-4632      TCGA-38-6178      TCGA-44-2655 
"HOXB1 WILD-TYPE" "HOXB1 WILD-TYPE" "HOXB1 WILD-TYPE" "HOXB1 WILD-TYPE" 
     TCGA-44-2656      TCGA-44-2657      TCGA-44-2659      TCGA-44-2661 
"HOXB1 WILD-TYPE" "HOXB1 WILD-TYPE" "HOXB1 WILD-TYPE" "HOXB1 WILD-TYPE" 
     TCGA-44-2662      TCGA-44-2665      TCGA-44-2666      TCGA-44-2668 
  "HOXB1 MUTATED" "HOXB1 WILD-TYPE" "HOXB1 WILD-TYPE" "HOXB1 WILD-TYPE" 
     TCGA-44-3396      TCGA-44-3398      TCGA-44-3918      TCGA-44-3919 
"HOXB1 WILD-TYPE" "HOXB1 WILD-TYPE" "HOXB1 WILD-TYPE" "HOXB1 WILD-TYPE" 
     TCGA-44-4112      TCGA-44-5643      TCGA-44-5645      TCGA-44-6144 
"HOXB1 WILD-TYPE" "HOXB1 WILD-TYPE" "HOXB1 WILD-TYPE" "HOXB1 WILD-TYPE" 
     TCGA-44-6145      TCGA-44-6146      TCGA-44-6147      TCGA-44-6148 
"HOXB1 WILD-TYPE" "HOXB1 WILD-TYPE" "HOXB1 WILD-TYPE" "HOXB1 WILD-TYPE" 
     TCGA-44-6774      TCGA-44-6775      TCGA-44-6776      TCGA-44-6777 
"HOXB1 WILD-TYPE" "HOXB1 WILD-TYPE" "HOXB1 WILD-TYPE" "HOXB1 WILD-TYPE" 
     TCGA-44-6778      TCGA-44-6779      TCGA-49-4486      TCGA-49-4487 
"HOXB1 WILD-TYPE" "HOXB1 WILD-TYPE" "HOXB1 WILD-TYPE" "HOXB1 WILD-TYPE" 
     TCGA-49-4488      TCGA-49-4490      TCGA-49-4494      TCGA-49-4501 
"HOXB1 WILD-TYPE" "HOXB1 WILD-TYPE" "HOXB1 WILD-TYPE" "HOXB1 WILD-TYPE" 
     TCGA-49-4505      TCGA-49-4506      TCGA-49-4507      TCGA-49-4510 
"HOXB1 WILD-TYPE" "HOXB1 WILD-TYPE" "HOXB1 WILD-TYPE" "HOXB1 WILD-TYPE" 
     TCGA-49-4512      TCGA-49-4514      TCGA-49-6742      TCGA-49-6743 
"HOXB1 WILD-TYPE" "HOXB1 WILD-TYPE" "HOXB1 WILD-TYPE" "HOXB1 WILD-TYPE" 
     TCGA-49-6744      TCGA-49-6745      TCGA-50-5044      TCGA-50-5045 
"HOXB1 WILD-TYPE" "HOXB1 WILD-TYPE" "HOXB1 WILD-TYPE" "HOXB1 WILD-TYPE" 
     TCGA-50-5049      TCGA-50-5051      TCGA-50-5055      TCGA-50-5066 
"HOXB1 WILD-TYPE" "HOXB1 WILD-TYPE" "HOXB1 WILD-TYPE" "HOXB1 WILD-TYPE" 
     TCGA-50-5068      TCGA-50-5072      TCGA-50-5930      TCGA-50-5931 
"HOXB1 WILD-TYPE" "HOXB1 WILD-TYPE" "HOXB1 WILD-TYPE" "HOXB1 WILD-TYPE" 
     TCGA-50-5932      TCGA-50-5933      TCGA-50-5935      TCGA-50-5936 
"HOXB1 WILD-TYPE" "HOXB1 WILD-TYPE" "HOXB1 WILD-TYPE" "HOXB1 WILD-TYPE" 
     TCGA-50-5939      TCGA-50-5941      TCGA-50-5942      TCGA-50-5944 
"HOXB1 WILD-TYPE" "HOXB1 WILD-TYPE" "HOXB1 WILD-TYPE" "HOXB1 WILD-TYPE" 
     TCGA-50-5946      TCGA-50-6590      TCGA-50-6591      TCGA-50-6592 
"HOXB1 WILD-TYPE" "HOXB1 WILD-TYPE" "HOXB1 WILD-TYPE" "HOXB1 WILD-TYPE" 
     TCGA-50-6593      TCGA-50-6594      TCGA-50-6595      TCGA-50-6597 
"HOXB1 WILD-TYPE" "HOXB1 WILD-TYPE" "HOXB1 WILD-TYPE" "HOXB1 WILD-TYPE" 
     TCGA-55-1592      TCGA-55-1594      TCGA-55-1595      TCGA-55-1596 
  "HOXB1 MUTATED" "HOXB1 WILD-TYPE" "HOXB1 WILD-TYPE" "HOXB1 WILD-TYPE" 
     TCGA-55-5899      TCGA-55-6543      TCGA-55-6642      TCGA-55-6712 
"HOXB1 WILD-TYPE" "HOXB1 WILD-TYPE" "HOXB1 WILD-TYPE" "HOXB1 WILD-TYPE" 
     TCGA-64-1676      TCGA-64-1677      TCGA-64-1678      TCGA-64-1680 
"HOXB1 WILD-TYPE" "HOXB1 WILD-TYPE" "HOXB1 WILD-TYPE" "HOXB1 WILD-TYPE" 
     TCGA-64-5774      TCGA-64-5775      TCGA-64-5778      TCGA-64-5779 
"HOXB1 WILD-TYPE" "HOXB1 WILD-TYPE" "HOXB1 WILD-TYPE" "HOXB1 WILD-TYPE" 
     TCGA-64-5781      TCGA-64-5815      TCGA-67-3770      TCGA-67-3771 
  "HOXB1 MUTATED" "HOXB1 WILD-TYPE" "HOXB1 WILD-TYPE" "HOXB1 WILD-TYPE" 
     TCGA-67-3772      TCGA-67-3773      TCGA-67-3774      TCGA-67-6215 
"HOXB1 WILD-TYPE" "HOXB1 WILD-TYPE"   "HOXB1 MUTATED" "HOXB1 WILD-TYPE" 
     TCGA-67-6216      TCGA-67-6217      TCGA-71-6725      TCGA-73-4658 
"HOXB1 WILD-TYPE" "HOXB1 WILD-TYPE" "HOXB1 WILD-TYPE" "HOXB1 WILD-TYPE" 
     TCGA-73-4659      TCGA-73-4662      TCGA-73-4666      TCGA-73-4668 
"HOXB1 WILD-TYPE" "HOXB1 WILD-TYPE"   "HOXB1 MUTATED" "HOXB1 WILD-TYPE" 
     TCGA-73-4670      TCGA-73-4675      TCGA-73-4676      TCGA-73-4677 
"HOXB1 WILD-TYPE" "HOXB1 WILD-TYPE" "HOXB1 WILD-TYPE" "HOXB1 WILD-TYPE" 
     TCGA-91-6828      TCGA-91-6829      TCGA-91-6831      TCGA-91-6835 
"HOXB1 WILD-TYPE" "HOXB1 WILD-TYPE" "HOXB1 WILD-TYPE" "HOXB1 WILD-TYPE" 
     TCGA-91-6836 
"HOXB1 WILD-TYPE" 
     TCGA-05-4249      TCGA-05-4250      TCGA-05-4382      TCGA-05-4384 
"HOXB1 WILD-TYPE" "HOXB1 WILD-TYPE" "HOXB1 WILD-TYPE" "HOXB1 WILD-TYPE" 
     TCGA-05-4390      TCGA-05-4396      TCGA-05-4397      TCGA-05-4398 
"HOXB1 WILD-TYPE" "HOXB1 WILD-TYPE" "HOXB1 WILD-TYPE" "HOXB1 WILD-TYPE" 
     TCGA-05-4402      TCGA-05-4405      TCGA-05-4415      TCGA-05-4417 
"HOXB1 WILD-TYPE" "HOXB1 WILD-TYPE" "HOXB1 WILD-TYPE" "HOXB1 WILD-TYPE" 
     TCGA-05-4418      TCGA-05-4420      TCGA-05-4424      TCGA-05-4426 
"HOXB1 WILD-TYPE" "HOXB1 WILD-TYPE" "HOXB1 WILD-TYPE" "HOXB1 WILD-TYPE" 
     TCGA-05-4427      TCGA-05-4430      TCGA-05-4432      TCGA-05-4433 
"HOXB1 WILD-TYPE" "HOXB1 WILD-TYPE" "HOXB1 WILD-TYPE" "HOXB1 WILD-TYPE" 
     TCGA-05-4434      TCGA-05-5420      TCGA-05-5423      TCGA-05-5425 
"HOXB1 WILD-TYPE" "HOXB1 WILD-TYPE" "HOXB1 WILD-TYPE" "HOXB1 WILD-TYPE" 
     TCGA-05-5429      TCGA-05-5715      TCGA-35-3615      TCGA-35-4122 
"HOXB1 WILD-TYPE" "HOXB1 WILD-TYPE" "HOXB1 WILD-TYPE" "HOXB1 WILD-TYPE" 
     TCGA-35-4123      TCGA-35-5375      TCGA-38-4625      TCGA-38-4626 
"HOXB1 WILD-TYPE" "HOXB1 WILD-TYPE"   "HOXB1 MUTATED" "HOXB1 WILD-TYPE" 
     TCGA-38-4627      TCGA-38-4628      TCGA-38-4629      TCGA-38-4630 
"HOXB1 WILD-TYPE" "HOXB1 WILD-TYPE" "HOXB1 WILD-TYPE" "HOXB1 WILD-TYPE" 
     TCGA-38-4631      TCGA-38-4632      TCGA-38-6178      TCGA-44-2655 
"HOXB1 WILD-TYPE" "HOXB1 WILD-TYPE" "HOXB1 WILD-TYPE" "HOXB1 WILD-TYPE" 
     TCGA-44-2656      TCGA-44-2657      TCGA-44-2659      TCGA-44-2661 
"HOXB1 WILD-TYPE" "HOXB1 WILD-TYPE" "HOXB1 WILD-TYPE" "HOXB1 WILD-TYPE" 
     TCGA-44-2662      TCGA-44-2665      TCGA-44-2666      TCGA-44-2668 
  "HOXB1 MUTATED" "HOXB1 WILD-TYPE" "HOXB1 WILD-TYPE" "HOXB1 WILD-TYPE" 
     TCGA-44-3396      TCGA-44-3398      TCGA-44-3918      TCGA-44-3919 
"HOXB1 WILD-TYPE" "HOXB1 WILD-TYPE" "HOXB1 WILD-TYPE" "HOXB1 WILD-TYPE" 
     TCGA-44-4112      TCGA-44-5643      TCGA-44-5645      TCGA-44-6144 
"HOXB1 WILD-TYPE" "HOXB1 WILD-TYPE" "HOXB1 WILD-TYPE" "HOXB1 WILD-TYPE" 
     TCGA-44-6145      TCGA-44-6146      TCGA-44-6147      TCGA-44-6148 
"HOXB1 WILD-TYPE" "HOXB1 WILD-TYPE" "HOXB1 WILD-TYPE" "HOXB1 WILD-TYPE" 
     TCGA-44-6774      TCGA-44-6775      TCGA-44-6776      TCGA-44-6777 
"HOXB1 WILD-TYPE" "HOXB1 WILD-TYPE" "HOXB1 WILD-TYPE" "HOXB1 WILD-TYPE" 
     TCGA-44-6778      TCGA-44-6779      TCGA-49-4486      TCGA-49-4487 
"HOXB1 WILD-TYPE" "HOXB1 WILD-TYPE" "HOXB1 WILD-TYPE" "HOXB1 WILD-TYPE" 
     TCGA-49-4488      TCGA-49-4490      TCGA-49-4494      TCGA-49-4501 
"HOXB1 WILD-TYPE" "HOXB1 WILD-TYPE" "HOXB1 WILD-TYPE" "HOXB1 WILD-TYPE" 
     TCGA-49-4505      TCGA-49-4506      TCGA-49-4507      TCGA-49-4510 
"HOXB1 WILD-TYPE" "HOXB1 WILD-TYPE" "HOXB1 WILD-TYPE" "HOXB1 WILD-TYPE" 
     TCGA-49-4512      TCGA-49-4514      TCGA-49-6742      TCGA-49-6743 
"HOXB1 WILD-TYPE" "HOXB1 WILD-TYPE" "HOXB1 WILD-TYPE" "HOXB1 WILD-TYPE" 
     TCGA-49-6744      TCGA-49-6745      TCGA-50-5044      TCGA-50-5045 
"HOXB1 WILD-TYPE" "HOXB1 WILD-TYPE" "HOXB1 WILD-TYPE" "HOXB1 WILD-TYPE" 
     TCGA-50-5049      TCGA-50-5051      TCGA-50-5055      TCGA-50-5066 
"HOXB1 WILD-TYPE" "HOXB1 WILD-TYPE" "HOXB1 WILD-TYPE" "HOXB1 WILD-TYPE" 
     TCGA-50-5068      TCGA-50-5072      TCGA-50-5930      TCGA-50-5931 
"HOXB1 WILD-TYPE" "HOXB1 WILD-TYPE" "HOXB1 WILD-TYPE" "HOXB1 WILD-TYPE" 
     TCGA-50-5932      TCGA-50-5933      TCGA-50-5935      TCGA-50-5936 
"HOXB1 WILD-TYPE" "HOXB1 WILD-TYPE" "HOXB1 WILD-TYPE" "HOXB1 WILD-TYPE" 
     TCGA-50-5939      TCGA-50-5941      TCGA-50-5942      TCGA-50-5944 
"HOXB1 WILD-TYPE" "HOXB1 WILD-TYPE" "HOXB1 WILD-TYPE" "HOXB1 WILD-TYPE" 
     TCGA-50-5946      TCGA-50-6590      TCGA-50-6591      TCGA-50-6592 
"HOXB1 WILD-TYPE" "HOXB1 WILD-TYPE" "HOXB1 WILD-TYPE" "HOXB1 WILD-TYPE" 
     TCGA-50-6593      TCGA-50-6594      TCGA-50-6595      TCGA-50-6597 
"HOXB1 WILD-TYPE" "HOXB1 WILD-TYPE" "HOXB1 WILD-TYPE" "HOXB1 WILD-TYPE" 
     TCGA-55-1592      TCGA-55-1594      TCGA-55-1595      TCGA-55-1596 
  "HOXB1 MUTATED" "HOXB1 WILD-TYPE" "HOXB1 WILD-TYPE" "HOXB1 WILD-TYPE" 
     TCGA-55-5899      TCGA-55-6543      TCGA-55-6642      TCGA-55-6712 
"HOXB1 WILD-TYPE" "HOXB1 WILD-TYPE" "HOXB1 WILD-TYPE" "HOXB1 WILD-TYPE" 
     TCGA-64-1676      TCGA-64-1677      TCGA-64-1678      TCGA-64-1680 
"HOXB1 WILD-TYPE" "HOXB1 WILD-TYPE" "HOXB1 WILD-TYPE" "HOXB1 WILD-TYPE" 
     TCGA-64-5774      TCGA-64-5775      TCGA-64-5778      TCGA-64-5779 
"HOXB1 WILD-TYPE" "HOXB1 WILD-TYPE" "HOXB1 WILD-TYPE" "HOXB1 WILD-TYPE" 
     TCGA-64-5781      TCGA-64-5815      TCGA-67-3770      TCGA-67-3771 
  "HOXB1 MUTATED" "HOXB1 WILD-TYPE" "HOXB1 WILD-TYPE" "HOXB1 WILD-TYPE" 
     TCGA-67-3772      TCGA-67-3773      TCGA-67-3774      TCGA-67-6215 
"HOXB1 WILD-TYPE" "HOXB1 WILD-TYPE"   "HOXB1 MUTATED" "HOXB1 WILD-TYPE" 
     TCGA-67-6216      TCGA-67-6217      TCGA-71-6725      TCGA-73-4658 
"HOXB1 WILD-TYPE" "HOXB1 WILD-TYPE" "HOXB1 WILD-TYPE" "HOXB1 WILD-TYPE" 
     TCGA-73-4659      TCGA-73-4662      TCGA-73-4666      TCGA-73-4668 
"HOXB1 WILD-TYPE" "HOXB1 WILD-TYPE"   "HOXB1 MUTATED" "HOXB1 WILD-TYPE" 
     TCGA-73-4670      TCGA-73-4675      TCGA-73-4676      TCGA-73-4677 
"HOXB1 WILD-TYPE" "HOXB1 WILD-TYPE" "HOXB1 WILD-TYPE" "HOXB1 WILD-TYPE" 
     TCGA-91-6828      TCGA-91-6829      TCGA-91-6831      TCGA-91-6835 
"HOXB1 WILD-TYPE" "HOXB1 WILD-TYPE" "HOXB1 WILD-TYPE" "HOXB1 WILD-TYPE" 
     TCGA-91-6836 
"HOXB1 WILD-TYPE" 
[1] "hr=" "2.5"
D194V2, continuous
D194V3, binary
[1] "tbl2"
                 cls
clus              [,1] [,2]
  HOXB1 MUTATED      4    3
  HOXB1 WILD-TYPE   89   76
        clus
vv       HOXB1 MUTATED HOXB1 WILD-TYPE
  FEMALE             4              89
  MALE               3              76
D194V4, continuous
[1] "Remove cluster labels:" "HOXB1 MUTATED"         
clus
  HOXB1 MUTATED HOXB1 WILD-TYPE 
              1              11 
     TCGA-35-4122      TCGA-35-4123      TCGA-35-5375      TCGA-64-1677 
"HOXB1 WILD-TYPE" "HOXB1 WILD-TYPE" "HOXB1 WILD-TYPE" "HOXB1 WILD-TYPE" 
     TCGA-64-5778      TCGA-71-6725      TCGA-73-4659      TCGA-73-4662 
"HOXB1 WILD-TYPE" "HOXB1 WILD-TYPE" "HOXB1 WILD-TYPE" "HOXB1 WILD-TYPE" 
     TCGA-73-4668      TCGA-73-4676      TCGA-75-5122 
"HOXB1 WILD-TYPE" "HOXB1 WILD-TYPE" "HOXB1 WILD-TYPE" 
D194V5, multiclass
D194V6, multiclass
    clus
vv   HOXB1 MUTATED HOXB1 WILD-TYPE
  T1             1              40
  T2             5             103
  T3             1              13
  T4             0               8
D194V7, multiclass
       clus
vv      HOXB1 MUTATED HOXB1 WILD-TYPE
  N0                7              88
  N1                0              37
  N2+N3             0              35
D194V8, multiclass
    clus
vv   HOXB1 MUTATED HOXB1 WILD-TYPE
  M0             6             131
  M1             1               8
  MX             0              22
D194V9, multiclass
     clus
vv    HOXB1 MUTATED HOXB1 WILD-TYPE
  I               6              82
  II              0              33
  III             0              39
  IV              1               8
D194V10, binary
[1] "tbl2"
                 cls
clus              [,1] [,2]
  HOXB1 MUTATED      1    6
  HOXB1 WILD-TYPE   15  150
     clus
vv    HOXB1 MUTATED HOXB1 WILD-TYPE
  NO              1              15
  YES             6             150
D194V11, continuous
D194V12, continuous
D194V13, multiclass
                                             clus
vv                                            HOXB1 MUTATED HOXB1 WILD-TYPE
  CURRENT REFORMED SMOKER FOR < OR = 15 YEARS             4              58
  CURRENT REFORMED SMOKER FOR > 15 YEARS                  2              44
  CURRENT SMOKER                                          1              27
  LIFELONG NON-SMOKER                                     0              24
D194V14, continuous

Clustering(195) Variable = NPSR1 MUTATION ANALYSIS
D195V1, survival
                 sevent
clus2              0  1
  NPSR1 MUTATED    3  2
  NPSR1 WILD-TYPE 96 48
  NPSR1 MUTATED NPSR1 WILD-TYPE 
              5             144 
  NPSR1 MUTATED NPSR1 WILD-TYPE 
              2              48 
$`NPSR1 MUTATED`
TCGA-05-4398 TCGA-44-4112 TCGA-50-5045 TCGA-50-5933 TCGA-67-3771 
       47.05         4.60        71.47        77.88         1.97 

$`NPSR1 WILD-TYPE`
TCGA-05-4249 TCGA-05-4250 TCGA-05-4382 TCGA-05-4384 TCGA-05-4390 TCGA-05-4396 
       38.07         3.98        19.92        14.01        37.02         9.96 
TCGA-05-4397 TCGA-05-4402 TCGA-05-4405 TCGA-05-4415 TCGA-05-4417 TCGA-05-4418 
       24.03         8.02        20.05         2.96        14.93         8.98 
TCGA-05-4420 TCGA-05-4424 TCGA-05-4426 TCGA-05-4427 TCGA-05-4430 TCGA-05-4432 
       29.95        30.02        26.01        26.01        25.02        25.02 
TCGA-05-4433 TCGA-05-4434 TCGA-05-5420 TCGA-05-5423 TCGA-05-5425 TCGA-05-5429 
       24.00        15.02         1.02         4.96         2.96         0.99 
TCGA-05-5715 TCGA-35-3615 TCGA-35-4122 TCGA-35-4123 TCGA-35-5375 TCGA-38-4625 
        2.04         0.46         7.36         5.95         8.68        47.61 
TCGA-38-4626 TCGA-38-4627 TCGA-38-4628 TCGA-38-4629 TCGA-38-4630 TCGA-38-4631 
       85.32        37.71        49.02        28.37        35.28        11.64 
TCGA-38-4632 TCGA-38-6178 TCGA-44-2655 TCGA-44-2656 TCGA-44-2657 TCGA-44-2659 
       44.61         5.19        18.87        19.10        13.15        17.39 
TCGA-44-2661 TCGA-44-2662 TCGA-44-2665 TCGA-44-2666 TCGA-44-2668 TCGA-44-3396 
        3.39        15.78        13.15         3.19         8.09        10.22 
TCGA-44-3398 TCGA-44-3918 TCGA-44-3919 TCGA-44-5643 TCGA-44-5645 TCGA-44-6144 
        8.32         6.44         6.21         3.48         6.84         0.30 
TCGA-44-6145 TCGA-44-6146 TCGA-44-6147 TCGA-44-6148 TCGA-44-6774 TCGA-44-6775 
        3.35         9.93         7.76         3.12         5.42         2.70 
TCGA-44-6776 TCGA-44-6777 TCGA-44-6778 TCGA-44-6779 TCGA-49-4486 TCGA-49-4487 
       63.72        32.45        36.49        16.41        76.21        28.11 
TCGA-49-4488 TCGA-49-4490 TCGA-49-4494 TCGA-49-4501 TCGA-49-4505 TCGA-49-4506 
       28.57        12.66        35.54        46.72        14.07        32.84 
TCGA-49-4507 TCGA-49-4510 TCGA-49-4512 TCGA-49-4514 TCGA-49-6742 TCGA-49-6743 
        8.81        29.46        29.75        43.20        15.02        12.13 
TCGA-49-6744 TCGA-49-6745 TCGA-50-5044 TCGA-50-5049 TCGA-50-5051 TCGA-50-5055 
       12.99         4.93        20.48        48.82        14.96        25.81 
TCGA-50-5066 TCGA-50-5068 TCGA-50-5072 TCGA-50-5930 TCGA-50-5931 TCGA-50-5932 
        9.76        49.28         8.05         9.27         8.78        35.87 
TCGA-50-5935 TCGA-50-5936 TCGA-50-5939 TCGA-50-5941 TCGA-50-5942 TCGA-50-5944 
       21.47         8.45        15.12         9.37         4.44        12.26 
TCGA-50-5946 TCGA-50-6590 TCGA-50-6591 TCGA-50-6592 TCGA-50-6593 TCGA-50-6594 
       11.47        42.31         3.88        25.51        11.05        12.16 
TCGA-50-6595 TCGA-50-6597 TCGA-55-1592 TCGA-55-1594 TCGA-55-1595 TCGA-55-1596 
        6.21        33.37        23.05        38.73        48.62        45.17 
TCGA-55-5899 TCGA-55-6543 TCGA-55-6642 TCGA-55-6712 TCGA-64-1676 TCGA-64-1677 
        2.86         0.07        32.61         0.79        56.81        20.65 
TCGA-64-1678 TCGA-64-1680 TCGA-64-5774 TCGA-64-5775 TCGA-64-5778 TCGA-64-5779 
       39.09        37.02        83.84         0.10        30.44        16.67 
TCGA-64-5781 TCGA-64-5815 TCGA-67-3770 TCGA-67-3772 TCGA-67-3773 TCGA-67-3774 
       39.52         7.33         0.99         0.59         2.04         0.59 
TCGA-67-6215 TCGA-67-6216 TCGA-67-6217 TCGA-71-6725 TCGA-73-4658 TCGA-73-4659 
        0.89         0.69        13.87         2.01        52.57        23.38 
TCGA-73-4662 TCGA-73-4666 TCGA-73-4668 TCGA-73-4670 TCGA-73-4675 TCGA-73-4676 
       29.95        20.28        15.35         0.46         1.32         4.01 
TCGA-73-4677 TCGA-91-6828 TCGA-91-6829 TCGA-91-6831 TCGA-91-6835 TCGA-91-6836 
        1.25         1.22        41.33         1.28         1.15         0.36 

  NPSR1 MUTATED NPSR1 WILD-TYPE 
           1.97            0.07 
  NPSR1 MUTATED NPSR1 WILD-TYPE 
          77.88           85.32 
  NPSR1 MUTATED NPSR1 WILD-TYPE 
          47.05           13.51 
[1] "2.0 - 77.9 (47.0)" "0.1 - 85.3 (13.5)"
     TCGA-05-4249      TCGA-05-4250      TCGA-05-4382      TCGA-05-4384 
"NPSR1 WILD-TYPE" "NPSR1 WILD-TYPE" "NPSR1 WILD-TYPE" "NPSR1 WILD-TYPE" 
     TCGA-05-4390      TCGA-05-4396      TCGA-05-4397      TCGA-05-4398 
"NPSR1 WILD-TYPE" "NPSR1 WILD-TYPE" "NPSR1 WILD-TYPE"   "NPSR1 MUTATED" 
     TCGA-05-4402      TCGA-05-4405      TCGA-05-4415      TCGA-05-4417 
"NPSR1 WILD-TYPE" "NPSR1 WILD-TYPE" "NPSR1 WILD-TYPE" "NPSR1 WILD-TYPE" 
     TCGA-05-4418      TCGA-05-4420      TCGA-05-4424      TCGA-05-4426 
"NPSR1 WILD-TYPE" "NPSR1 WILD-TYPE" "NPSR1 WILD-TYPE" "NPSR1 WILD-TYPE" 
     TCGA-05-4427      TCGA-05-4430      TCGA-05-4432      TCGA-05-4433 
"NPSR1 WILD-TYPE" "NPSR1 WILD-TYPE" "NPSR1 WILD-TYPE" "NPSR1 WILD-TYPE" 
     TCGA-05-4434      TCGA-05-5420      TCGA-05-5423      TCGA-05-5425 
"NPSR1 WILD-TYPE" "NPSR1 WILD-TYPE" "NPSR1 WILD-TYPE" "NPSR1 WILD-TYPE" 
     TCGA-05-5429      TCGA-05-5715      TCGA-35-3615      TCGA-35-4122 
"NPSR1 WILD-TYPE" "NPSR1 WILD-TYPE" "NPSR1 WILD-TYPE" "NPSR1 WILD-TYPE" 
     TCGA-35-4123      TCGA-35-5375      TCGA-38-4625      TCGA-38-4626 
"NPSR1 WILD-TYPE" "NPSR1 WILD-TYPE" "NPSR1 WILD-TYPE" "NPSR1 WILD-TYPE" 
     TCGA-38-4627      TCGA-38-4628      TCGA-38-4629      TCGA-38-4630 
"NPSR1 WILD-TYPE" "NPSR1 WILD-TYPE" "NPSR1 WILD-TYPE" "NPSR1 WILD-TYPE" 
     TCGA-38-4631      TCGA-38-4632      TCGA-38-6178      TCGA-44-2655 
"NPSR1 WILD-TYPE" "NPSR1 WILD-TYPE" "NPSR1 WILD-TYPE" "NPSR1 WILD-TYPE" 
     TCGA-44-2656      TCGA-44-2657      TCGA-44-2659      TCGA-44-2661 
"NPSR1 WILD-TYPE" "NPSR1 WILD-TYPE" "NPSR1 WILD-TYPE" "NPSR1 WILD-TYPE" 
     TCGA-44-2662      TCGA-44-2665      TCGA-44-2666      TCGA-44-2668 
"NPSR1 WILD-TYPE" "NPSR1 WILD-TYPE" "NPSR1 WILD-TYPE" "NPSR1 WILD-TYPE" 
     TCGA-44-3396      TCGA-44-3398      TCGA-44-3918      TCGA-44-3919 
"NPSR1 WILD-TYPE" "NPSR1 WILD-TYPE" "NPSR1 WILD-TYPE" "NPSR1 WILD-TYPE" 
     TCGA-44-4112      TCGA-44-5643      TCGA-44-5645      TCGA-44-6144 
  "NPSR1 MUTATED" "NPSR1 WILD-TYPE" "NPSR1 WILD-TYPE" "NPSR1 WILD-TYPE" 
     TCGA-44-6145      TCGA-44-6146      TCGA-44-6147      TCGA-44-6148 
"NPSR1 WILD-TYPE" "NPSR1 WILD-TYPE" "NPSR1 WILD-TYPE" "NPSR1 WILD-TYPE" 
     TCGA-44-6774      TCGA-44-6775      TCGA-44-6776      TCGA-44-6777 
"NPSR1 WILD-TYPE" "NPSR1 WILD-TYPE" "NPSR1 WILD-TYPE" "NPSR1 WILD-TYPE" 
     TCGA-44-6778      TCGA-44-6779      TCGA-49-4486      TCGA-49-4487 
"NPSR1 WILD-TYPE" "NPSR1 WILD-TYPE" "NPSR1 WILD-TYPE" "NPSR1 WILD-TYPE" 
     TCGA-49-4488      TCGA-49-4490      TCGA-49-4494      TCGA-49-4501 
"NPSR1 WILD-TYPE" "NPSR1 WILD-TYPE" "NPSR1 WILD-TYPE" "NPSR1 WILD-TYPE" 
     TCGA-49-4505      TCGA-49-4506      TCGA-49-4507      TCGA-49-4510 
"NPSR1 WILD-TYPE" "NPSR1 WILD-TYPE" "NPSR1 WILD-TYPE" "NPSR1 WILD-TYPE" 
     TCGA-49-4512      TCGA-49-4514      TCGA-49-6742      TCGA-49-6743 
"NPSR1 WILD-TYPE" "NPSR1 WILD-TYPE" "NPSR1 WILD-TYPE" "NPSR1 WILD-TYPE" 
     TCGA-49-6744      TCGA-49-6745      TCGA-50-5044      TCGA-50-5045 
"NPSR1 WILD-TYPE" "NPSR1 WILD-TYPE" "NPSR1 WILD-TYPE"   "NPSR1 MUTATED" 
     TCGA-50-5049      TCGA-50-5051      TCGA-50-5055      TCGA-50-5066 
"NPSR1 WILD-TYPE" "NPSR1 WILD-TYPE" "NPSR1 WILD-TYPE" "NPSR1 WILD-TYPE" 
     TCGA-50-5068      TCGA-50-5072      TCGA-50-5930      TCGA-50-5931 
"NPSR1 WILD-TYPE" "NPSR1 WILD-TYPE" "NPSR1 WILD-TYPE" "NPSR1 WILD-TYPE" 
     TCGA-50-5932      TCGA-50-5933      TCGA-50-5935      TCGA-50-5936 
"NPSR1 WILD-TYPE"   "NPSR1 MUTATED" "NPSR1 WILD-TYPE" "NPSR1 WILD-TYPE" 
     TCGA-50-5939      TCGA-50-5941      TCGA-50-5942      TCGA-50-5944 
"NPSR1 WILD-TYPE" "NPSR1 WILD-TYPE" "NPSR1 WILD-TYPE" "NPSR1 WILD-TYPE" 
     TCGA-50-5946      TCGA-50-6590      TCGA-50-6591      TCGA-50-6592 
"NPSR1 WILD-TYPE" "NPSR1 WILD-TYPE" "NPSR1 WILD-TYPE" "NPSR1 WILD-TYPE" 
     TCGA-50-6593      TCGA-50-6594      TCGA-50-6595      TCGA-50-6597 
"NPSR1 WILD-TYPE" "NPSR1 WILD-TYPE" "NPSR1 WILD-TYPE" "NPSR1 WILD-TYPE" 
     TCGA-55-1592      TCGA-55-1594      TCGA-55-1595      TCGA-55-1596 
"NPSR1 WILD-TYPE" "NPSR1 WILD-TYPE" "NPSR1 WILD-TYPE" "NPSR1 WILD-TYPE" 
     TCGA-55-5899      TCGA-55-6543      TCGA-55-6642      TCGA-55-6712 
"NPSR1 WILD-TYPE" "NPSR1 WILD-TYPE" "NPSR1 WILD-TYPE" "NPSR1 WILD-TYPE" 
     TCGA-64-1676      TCGA-64-1677      TCGA-64-1678      TCGA-64-1680 
"NPSR1 WILD-TYPE" "NPSR1 WILD-TYPE" "NPSR1 WILD-TYPE" "NPSR1 WILD-TYPE" 
     TCGA-64-5774      TCGA-64-5775      TCGA-64-5778      TCGA-64-5779 
"NPSR1 WILD-TYPE" "NPSR1 WILD-TYPE" "NPSR1 WILD-TYPE" "NPSR1 WILD-TYPE" 
     TCGA-64-5781      TCGA-64-5815      TCGA-67-3770      TCGA-67-3771 
"NPSR1 WILD-TYPE" "NPSR1 WILD-TYPE" "NPSR1 WILD-TYPE"   "NPSR1 MUTATED" 
     TCGA-67-3772      TCGA-67-3773      TCGA-67-3774      TCGA-67-6215 
"NPSR1 WILD-TYPE" "NPSR1 WILD-TYPE" "NPSR1 WILD-TYPE" "NPSR1 WILD-TYPE" 
     TCGA-67-6216      TCGA-67-6217      TCGA-71-6725      TCGA-73-4658 
"NPSR1 WILD-TYPE" "NPSR1 WILD-TYPE" "NPSR1 WILD-TYPE" "NPSR1 WILD-TYPE" 
     TCGA-73-4659      TCGA-73-4662      TCGA-73-4666      TCGA-73-4668 
"NPSR1 WILD-TYPE" "NPSR1 WILD-TYPE" "NPSR1 WILD-TYPE" "NPSR1 WILD-TYPE" 
     TCGA-73-4670      TCGA-73-4675      TCGA-73-4676      TCGA-73-4677 
"NPSR1 WILD-TYPE" "NPSR1 WILD-TYPE" "NPSR1 WILD-TYPE" "NPSR1 WILD-TYPE" 
     TCGA-91-6828      TCGA-91-6829      TCGA-91-6831      TCGA-91-6835 
"NPSR1 WILD-TYPE" "NPSR1 WILD-TYPE" "NPSR1 WILD-TYPE" "NPSR1 WILD-TYPE" 
     TCGA-91-6836 
"NPSR1 WILD-TYPE" 
     TCGA-05-4249      TCGA-05-4250      TCGA-05-4382      TCGA-05-4384 
"NPSR1 WILD-TYPE" "NPSR1 WILD-TYPE" "NPSR1 WILD-TYPE" "NPSR1 WILD-TYPE" 
     TCGA-05-4390      TCGA-05-4396      TCGA-05-4397      TCGA-05-4398 
"NPSR1 WILD-TYPE" "NPSR1 WILD-TYPE" "NPSR1 WILD-TYPE"   "NPSR1 MUTATED" 
     TCGA-05-4402      TCGA-05-4405      TCGA-05-4415      TCGA-05-4417 
"NPSR1 WILD-TYPE" "NPSR1 WILD-TYPE" "NPSR1 WILD-TYPE" "NPSR1 WILD-TYPE" 
     TCGA-05-4418      TCGA-05-4420      TCGA-05-4424      TCGA-05-4426 
"NPSR1 WILD-TYPE" "NPSR1 WILD-TYPE" "NPSR1 WILD-TYPE" "NPSR1 WILD-TYPE" 
     TCGA-05-4427      TCGA-05-4430      TCGA-05-4432      TCGA-05-4433 
"NPSR1 WILD-TYPE" "NPSR1 WILD-TYPE" "NPSR1 WILD-TYPE" "NPSR1 WILD-TYPE" 
     TCGA-05-4434      TCGA-05-5420      TCGA-05-5423      TCGA-05-5425 
"NPSR1 WILD-TYPE" "NPSR1 WILD-TYPE" "NPSR1 WILD-TYPE" "NPSR1 WILD-TYPE" 
     TCGA-05-5429      TCGA-05-5715      TCGA-35-3615      TCGA-35-4122 
"NPSR1 WILD-TYPE" "NPSR1 WILD-TYPE" "NPSR1 WILD-TYPE" "NPSR1 WILD-TYPE" 
     TCGA-35-4123      TCGA-35-5375      TCGA-38-4625      TCGA-38-4626 
"NPSR1 WILD-TYPE" "NPSR1 WILD-TYPE" "NPSR1 WILD-TYPE" "NPSR1 WILD-TYPE" 
     TCGA-38-4627      TCGA-38-4628      TCGA-38-4629      TCGA-38-4630 
"NPSR1 WILD-TYPE" "NPSR1 WILD-TYPE" "NPSR1 WILD-TYPE" "NPSR1 WILD-TYPE" 
     TCGA-38-4631      TCGA-38-4632      TCGA-38-6178      TCGA-44-2655 
"NPSR1 WILD-TYPE" "NPSR1 WILD-TYPE" "NPSR1 WILD-TYPE" "NPSR1 WILD-TYPE" 
     TCGA-44-2656      TCGA-44-2657      TCGA-44-2659      TCGA-44-2661 
"NPSR1 WILD-TYPE" "NPSR1 WILD-TYPE" "NPSR1 WILD-TYPE" "NPSR1 WILD-TYPE" 
     TCGA-44-2662      TCGA-44-2665      TCGA-44-2666      TCGA-44-2668 
"NPSR1 WILD-TYPE" "NPSR1 WILD-TYPE" "NPSR1 WILD-TYPE" "NPSR1 WILD-TYPE" 
     TCGA-44-3396      TCGA-44-3398      TCGA-44-3918      TCGA-44-3919 
"NPSR1 WILD-TYPE" "NPSR1 WILD-TYPE" "NPSR1 WILD-TYPE" "NPSR1 WILD-TYPE" 
     TCGA-44-4112      TCGA-44-5643      TCGA-44-5645      TCGA-44-6144 
  "NPSR1 MUTATED" "NPSR1 WILD-TYPE" "NPSR1 WILD-TYPE" "NPSR1 WILD-TYPE" 
     TCGA-44-6145      TCGA-44-6146      TCGA-44-6147      TCGA-44-6148 
"NPSR1 WILD-TYPE" "NPSR1 WILD-TYPE" "NPSR1 WILD-TYPE" "NPSR1 WILD-TYPE" 
     TCGA-44-6774      TCGA-44-6775      TCGA-44-6776      TCGA-44-6777 
"NPSR1 WILD-TYPE" "NPSR1 WILD-TYPE" "NPSR1 WILD-TYPE" "NPSR1 WILD-TYPE" 
     TCGA-44-6778      TCGA-44-6779      TCGA-49-4486      TCGA-49-4487 
"NPSR1 WILD-TYPE" "NPSR1 WILD-TYPE" "NPSR1 WILD-TYPE" "NPSR1 WILD-TYPE" 
     TCGA-49-4488      TCGA-49-4490      TCGA-49-4494      TCGA-49-4501 
"NPSR1 WILD-TYPE" "NPSR1 WILD-TYPE" "NPSR1 WILD-TYPE" "NPSR1 WILD-TYPE" 
     TCGA-49-4505      TCGA-49-4506      TCGA-49-4507      TCGA-49-4510 
"NPSR1 WILD-TYPE" "NPSR1 WILD-TYPE" "NPSR1 WILD-TYPE" "NPSR1 WILD-TYPE" 
     TCGA-49-4512      TCGA-49-4514      TCGA-49-6742      TCGA-49-6743 
"NPSR1 WILD-TYPE" "NPSR1 WILD-TYPE" "NPSR1 WILD-TYPE" "NPSR1 WILD-TYPE" 
     TCGA-49-6744      TCGA-49-6745      TCGA-50-5044      TCGA-50-5045 
"NPSR1 WILD-TYPE" "NPSR1 WILD-TYPE" "NPSR1 WILD-TYPE"   "NPSR1 MUTATED" 
     TCGA-50-5049      TCGA-50-5051      TCGA-50-5055      TCGA-50-5066 
"NPSR1 WILD-TYPE" "NPSR1 WILD-TYPE" "NPSR1 WILD-TYPE" "NPSR1 WILD-TYPE" 
     TCGA-50-5068      TCGA-50-5072      TCGA-50-5930      TCGA-50-5931 
"NPSR1 WILD-TYPE" "NPSR1 WILD-TYPE" "NPSR1 WILD-TYPE" "NPSR1 WILD-TYPE" 
     TCGA-50-5932      TCGA-50-5933      TCGA-50-5935      TCGA-50-5936 
"NPSR1 WILD-TYPE"   "NPSR1 MUTATED" "NPSR1 WILD-TYPE" "NPSR1 WILD-TYPE" 
     TCGA-50-5939      TCGA-50-5941      TCGA-50-5942      TCGA-50-5944 
"NPSR1 WILD-TYPE" "NPSR1 WILD-TYPE" "NPSR1 WILD-TYPE" "NPSR1 WILD-TYPE" 
     TCGA-50-5946      TCGA-50-6590      TCGA-50-6591      TCGA-50-6592 
"NPSR1 WILD-TYPE" "NPSR1 WILD-TYPE" "NPSR1 WILD-TYPE" "NPSR1 WILD-TYPE" 
     TCGA-50-6593      TCGA-50-6594      TCGA-50-6595      TCGA-50-6597 
"NPSR1 WILD-TYPE" "NPSR1 WILD-TYPE" "NPSR1 WILD-TYPE" "NPSR1 WILD-TYPE" 
     TCGA-55-1592      TCGA-55-1594      TCGA-55-1595      TCGA-55-1596 
"NPSR1 WILD-TYPE" "NPSR1 WILD-TYPE" "NPSR1 WILD-TYPE" "NPSR1 WILD-TYPE" 
     TCGA-55-5899      TCGA-55-6543      TCGA-55-6642      TCGA-55-6712 
"NPSR1 WILD-TYPE" "NPSR1 WILD-TYPE" "NPSR1 WILD-TYPE" "NPSR1 WILD-TYPE" 
     TCGA-64-1676      TCGA-64-1677      TCGA-64-1678      TCGA-64-1680 
"NPSR1 WILD-TYPE" "NPSR1 WILD-TYPE" "NPSR1 WILD-TYPE" "NPSR1 WILD-TYPE" 
     TCGA-64-5774      TCGA-64-5775      TCGA-64-5778      TCGA-64-5779 
"NPSR1 WILD-TYPE" "NPSR1 WILD-TYPE" "NPSR1 WILD-TYPE" "NPSR1 WILD-TYPE" 
     TCGA-64-5781      TCGA-64-5815      TCGA-67-3770      TCGA-67-3771 
"NPSR1 WILD-TYPE" "NPSR1 WILD-TYPE" "NPSR1 WILD-TYPE"   "NPSR1 MUTATED" 
     TCGA-67-3772      TCGA-67-3773      TCGA-67-3774      TCGA-67-6215 
"NPSR1 WILD-TYPE" "NPSR1 WILD-TYPE" "NPSR1 WILD-TYPE" "NPSR1 WILD-TYPE" 
     TCGA-67-6216      TCGA-67-6217      TCGA-71-6725      TCGA-73-4658 
"NPSR1 WILD-TYPE" "NPSR1 WILD-TYPE" "NPSR1 WILD-TYPE" "NPSR1 WILD-TYPE" 
     TCGA-73-4659      TCGA-73-4662      TCGA-73-4666      TCGA-73-4668 
"NPSR1 WILD-TYPE" "NPSR1 WILD-TYPE" "NPSR1 WILD-TYPE" "NPSR1 WILD-TYPE" 
     TCGA-73-4670      TCGA-73-4675      TCGA-73-4676      TCGA-73-4677 
"NPSR1 WILD-TYPE" "NPSR1 WILD-TYPE" "NPSR1 WILD-TYPE" "NPSR1 WILD-TYPE" 
     TCGA-91-6828      TCGA-91-6829      TCGA-91-6831      TCGA-91-6835 
"NPSR1 WILD-TYPE" "NPSR1 WILD-TYPE" "NPSR1 WILD-TYPE" "NPSR1 WILD-TYPE" 
     TCGA-91-6836 
"NPSR1 WILD-TYPE" 
     TCGA-05-4249      TCGA-05-4250      TCGA-05-4382      TCGA-05-4384 
"NPSR1 WILD-TYPE" "NPSR1 WILD-TYPE" "NPSR1 WILD-TYPE" "NPSR1 WILD-TYPE" 
     TCGA-05-4390      TCGA-05-4396      TCGA-05-4397      TCGA-05-4398 
"NPSR1 WILD-TYPE" "NPSR1 WILD-TYPE" "NPSR1 WILD-TYPE"   "NPSR1 MUTATED" 
     TCGA-05-4402      TCGA-05-4405      TCGA-05-4415      TCGA-05-4417 
"NPSR1 WILD-TYPE" "NPSR1 WILD-TYPE" "NPSR1 WILD-TYPE" "NPSR1 WILD-TYPE" 
     TCGA-05-4418      TCGA-05-4420      TCGA-05-4424      TCGA-05-4426 
"NPSR1 WILD-TYPE" "NPSR1 WILD-TYPE" "NPSR1 WILD-TYPE" "NPSR1 WILD-TYPE" 
     TCGA-05-4427      TCGA-05-4430      TCGA-05-4432      TCGA-05-4433 
"NPSR1 WILD-TYPE" "NPSR1 WILD-TYPE" "NPSR1 WILD-TYPE" "NPSR1 WILD-TYPE" 
     TCGA-05-4434      TCGA-05-5420      TCGA-05-5423      TCGA-05-5425 
"NPSR1 WILD-TYPE" "NPSR1 WILD-TYPE" "NPSR1 WILD-TYPE" "NPSR1 WILD-TYPE" 
     TCGA-05-5429      TCGA-05-5715      TCGA-35-3615      TCGA-35-4122 
"NPSR1 WILD-TYPE" "NPSR1 WILD-TYPE" "NPSR1 WILD-TYPE" "NPSR1 WILD-TYPE" 
     TCGA-35-4123      TCGA-35-5375      TCGA-38-4625      TCGA-38-4626 
"NPSR1 WILD-TYPE" "NPSR1 WILD-TYPE" "NPSR1 WILD-TYPE" "NPSR1 WILD-TYPE" 
     TCGA-38-4627      TCGA-38-4628      TCGA-38-4629      TCGA-38-4630 
"NPSR1 WILD-TYPE" "NPSR1 WILD-TYPE" "NPSR1 WILD-TYPE" "NPSR1 WILD-TYPE" 
     TCGA-38-4631      TCGA-38-4632      TCGA-38-6178      TCGA-44-2655 
"NPSR1 WILD-TYPE" "NPSR1 WILD-TYPE" "NPSR1 WILD-TYPE" "NPSR1 WILD-TYPE" 
     TCGA-44-2656      TCGA-44-2657      TCGA-44-2659      TCGA-44-2661 
"NPSR1 WILD-TYPE" "NPSR1 WILD-TYPE" "NPSR1 WILD-TYPE" "NPSR1 WILD-TYPE" 
     TCGA-44-2662      TCGA-44-2665      TCGA-44-2666      TCGA-44-2668 
"NPSR1 WILD-TYPE" "NPSR1 WILD-TYPE" "NPSR1 WILD-TYPE" "NPSR1 WILD-TYPE" 
     TCGA-44-3396      TCGA-44-3398      TCGA-44-3918      TCGA-44-3919 
"NPSR1 WILD-TYPE" "NPSR1 WILD-TYPE" "NPSR1 WILD-TYPE" "NPSR1 WILD-TYPE" 
     TCGA-44-4112      TCGA-44-5643      TCGA-44-5645      TCGA-44-6144 
  "NPSR1 MUTATED" "NPSR1 WILD-TYPE" "NPSR1 WILD-TYPE" "NPSR1 WILD-TYPE" 
     TCGA-44-6145      TCGA-44-6146      TCGA-44-6147      TCGA-44-6148 
"NPSR1 WILD-TYPE" "NPSR1 WILD-TYPE" "NPSR1 WILD-TYPE" "NPSR1 WILD-TYPE" 
     TCGA-44-6774      TCGA-44-6775      TCGA-44-6776      TCGA-44-6777 
"NPSR1 WILD-TYPE" "NPSR1 WILD-TYPE" "NPSR1 WILD-TYPE" "NPSR1 WILD-TYPE" 
     TCGA-44-6778      TCGA-44-6779      TCGA-49-4486      TCGA-49-4487 
"NPSR1 WILD-TYPE" "NPSR1 WILD-TYPE" "NPSR1 WILD-TYPE" "NPSR1 WILD-TYPE" 
     TCGA-49-4488      TCGA-49-4490      TCGA-49-4494      TCGA-49-4501 
"NPSR1 WILD-TYPE" "NPSR1 WILD-TYPE" "NPSR1 WILD-TYPE" "NPSR1 WILD-TYPE" 
     TCGA-49-4505      TCGA-49-4506      TCGA-49-4507      TCGA-49-4510 
"NPSR1 WILD-TYPE" "NPSR1 WILD-TYPE" "NPSR1 WILD-TYPE" "NPSR1 WILD-TYPE" 
     TCGA-49-4512      TCGA-49-4514      TCGA-49-6742      TCGA-49-6743 
"NPSR1 WILD-TYPE" "NPSR1 WILD-TYPE" "NPSR1 WILD-TYPE" "NPSR1 WILD-TYPE" 
     TCGA-49-6744      TCGA-49-6745      TCGA-50-5044      TCGA-50-5045 
"NPSR1 WILD-TYPE" "NPSR1 WILD-TYPE" "NPSR1 WILD-TYPE"   "NPSR1 MUTATED" 
     TCGA-50-5049      TCGA-50-5051      TCGA-50-5055      TCGA-50-5066 
"NPSR1 WILD-TYPE" "NPSR1 WILD-TYPE" "NPSR1 WILD-TYPE" "NPSR1 WILD-TYPE" 
     TCGA-50-5068      TCGA-50-5072      TCGA-50-5930      TCGA-50-5931 
"NPSR1 WILD-TYPE" "NPSR1 WILD-TYPE" "NPSR1 WILD-TYPE" "NPSR1 WILD-TYPE" 
     TCGA-50-5932      TCGA-50-5933      TCGA-50-5935      TCGA-50-5936 
"NPSR1 WILD-TYPE"   "NPSR1 MUTATED" "NPSR1 WILD-TYPE" "NPSR1 WILD-TYPE" 
     TCGA-50-5939      TCGA-50-5941      TCGA-50-5942      TCGA-50-5944 
"NPSR1 WILD-TYPE" "NPSR1 WILD-TYPE" "NPSR1 WILD-TYPE" "NPSR1 WILD-TYPE" 
     TCGA-50-5946      TCGA-50-6590      TCGA-50-6591      TCGA-50-6592 
"NPSR1 WILD-TYPE" "NPSR1 WILD-TYPE" "NPSR1 WILD-TYPE" "NPSR1 WILD-TYPE" 
     TCGA-50-6593      TCGA-50-6594      TCGA-50-6595      TCGA-50-6597 
"NPSR1 WILD-TYPE" "NPSR1 WILD-TYPE" "NPSR1 WILD-TYPE" "NPSR1 WILD-TYPE" 
     TCGA-55-1592      TCGA-55-1594      TCGA-55-1595      TCGA-55-1596 
"NPSR1 WILD-TYPE" "NPSR1 WILD-TYPE" "NPSR1 WILD-TYPE" "NPSR1 WILD-TYPE" 
     TCGA-55-5899      TCGA-55-6543      TCGA-55-6642      TCGA-55-6712 
"NPSR1 WILD-TYPE" "NPSR1 WILD-TYPE" "NPSR1 WILD-TYPE" "NPSR1 WILD-TYPE" 
     TCGA-64-1676      TCGA-64-1677      TCGA-64-1678      TCGA-64-1680 
"NPSR1 WILD-TYPE" "NPSR1 WILD-TYPE" "NPSR1 WILD-TYPE" "NPSR1 WILD-TYPE" 
     TCGA-64-5774      TCGA-64-5775      TCGA-64-5778      TCGA-64-5779 
"NPSR1 WILD-TYPE" "NPSR1 WILD-TYPE" "NPSR1 WILD-TYPE" "NPSR1 WILD-TYPE" 
     TCGA-64-5781      TCGA-64-5815      TCGA-67-3770      TCGA-67-3771 
"NPSR1 WILD-TYPE" "NPSR1 WILD-TYPE" "NPSR1 WILD-TYPE"   "NPSR1 MUTATED" 
     TCGA-67-3772      TCGA-67-3773      TCGA-67-3774      TCGA-67-6215 
"NPSR1 WILD-TYPE" "NPSR1 WILD-TYPE" "NPSR1 WILD-TYPE" "NPSR1 WILD-TYPE" 
     TCGA-67-6216      TCGA-67-6217      TCGA-71-6725      TCGA-73-4658 
"NPSR1 WILD-TYPE" "NPSR1 WILD-TYPE" "NPSR1 WILD-TYPE" "NPSR1 WILD-TYPE" 
     TCGA-73-4659      TCGA-73-4662      TCGA-73-4666      TCGA-73-4668 
"NPSR1 WILD-TYPE" "NPSR1 WILD-TYPE" "NPSR1 WILD-TYPE" "NPSR1 WILD-TYPE" 
     TCGA-73-4670      TCGA-73-4675      TCGA-73-4676      TCGA-73-4677 
"NPSR1 WILD-TYPE" "NPSR1 WILD-TYPE" "NPSR1 WILD-TYPE" "NPSR1 WILD-TYPE" 
     TCGA-91-6828      TCGA-91-6829      TCGA-91-6831      TCGA-91-6835 
"NPSR1 WILD-TYPE" "NPSR1 WILD-TYPE" "NPSR1 WILD-TYPE" "NPSR1 WILD-TYPE" 
     TCGA-91-6836 
"NPSR1 WILD-TYPE" 
[1] "hr=" "2.5"
D195V2, continuous
D195V3, binary
[1] "tbl2"
                 cls
clus              [,1] [,2]
  NPSR1 MUTATED      4    2
  NPSR1 WILD-TYPE   89   77
        clus
vv       NPSR1 MUTATED NPSR1 WILD-TYPE
  FEMALE             4              89
  MALE               2              77
D195V4, continuous
D195V5, multiclass
D195V6, multiclass
    clus
vv   NPSR1 MUTATED NPSR1 WILD-TYPE
  T1             1              40
  T2             3             105
  T3             0              14
  T4             2               6
D195V7, multiclass
       clus
vv      NPSR1 MUTATED NPSR1 WILD-TYPE
  N0                3              92
  N1                1              36
  N2+N3             2              33
D195V8, multiclass
    clus
vv   NPSR1 MUTATED NPSR1 WILD-TYPE
  M0             6             131
  M1             0               9
  MX             0              22
D195V9, multiclass
     clus
vv    NPSR1 MUTATED NPSR1 WILD-TYPE
  I               4              84
  II              0              33
  III             2              37
  IV              0               9
D195V10, binary
[1] "tbl2"
                 cls
clus              [,1] [,2]
  NPSR1 MUTATED      2    4
  NPSR1 WILD-TYPE   14  152
     clus
vv    NPSR1 MUTATED NPSR1 WILD-TYPE
  NO              2              14
  YES             4             152
D195V11, continuous
D195V12, continuous
[1] "Remove cluster labels:" "NPSR1 MUTATED"         
clus
  NPSR1 MUTATED NPSR1 WILD-TYPE 
              2              80 
     TCGA-05-4384      TCGA-05-4390      TCGA-05-4396      TCGA-05-4403 
"NPSR1 WILD-TYPE" "NPSR1 WILD-TYPE" "NPSR1 WILD-TYPE" "NPSR1 WILD-TYPE" 
     TCGA-05-4405      TCGA-05-4415      TCGA-05-4417      TCGA-05-4424 
"NPSR1 WILD-TYPE" "NPSR1 WILD-TYPE" "NPSR1 WILD-TYPE" "NPSR1 WILD-TYPE" 
     TCGA-05-4427      TCGA-05-4433      TCGA-05-5420      TCGA-05-5423 
"NPSR1 WILD-TYPE" "NPSR1 WILD-TYPE" "NPSR1 WILD-TYPE" "NPSR1 WILD-TYPE" 
     TCGA-05-5425      TCGA-05-5428      TCGA-35-4122      TCGA-35-4123 
"NPSR1 WILD-TYPE" "NPSR1 WILD-TYPE" "NPSR1 WILD-TYPE" "NPSR1 WILD-TYPE" 
     TCGA-35-5375      TCGA-38-4629      TCGA-38-4632      TCGA-44-2655 
"NPSR1 WILD-TYPE" "NPSR1 WILD-TYPE" "NPSR1 WILD-TYPE" "NPSR1 WILD-TYPE" 
     TCGA-44-2656      TCGA-44-2657      TCGA-44-2659      TCGA-44-2662 
"NPSR1 WILD-TYPE" "NPSR1 WILD-TYPE" "NPSR1 WILD-TYPE" "NPSR1 WILD-TYPE" 
     TCGA-44-2668      TCGA-44-3398      TCGA-44-3918      TCGA-44-5645 
"NPSR1 WILD-TYPE" "NPSR1 WILD-TYPE" "NPSR1 WILD-TYPE" "NPSR1 WILD-TYPE" 
     TCGA-44-6145      TCGA-44-6146      TCGA-44-6147      TCGA-44-6148 
"NPSR1 WILD-TYPE" "NPSR1 WILD-TYPE" "NPSR1 WILD-TYPE" "NPSR1 WILD-TYPE" 
     TCGA-44-6775      TCGA-44-6776      TCGA-44-6777      TCGA-44-6778 
"NPSR1 WILD-TYPE" "NPSR1 WILD-TYPE" "NPSR1 WILD-TYPE" "NPSR1 WILD-TYPE" 
     TCGA-44-6779      TCGA-49-4486      TCGA-49-4488      TCGA-49-4494 
"NPSR1 WILD-TYPE" "NPSR1 WILD-TYPE" "NPSR1 WILD-TYPE" "NPSR1 WILD-TYPE" 
     TCGA-49-4505      TCGA-49-4507      TCGA-50-5051      TCGA-50-5072 
"NPSR1 WILD-TYPE" "NPSR1 WILD-TYPE" "NPSR1 WILD-TYPE" "NPSR1 WILD-TYPE" 
     TCGA-50-5939      TCGA-50-5942      TCGA-50-5946      TCGA-50-6590 
"NPSR1 WILD-TYPE" "NPSR1 WILD-TYPE" "NPSR1 WILD-TYPE" "NPSR1 WILD-TYPE" 
     TCGA-50-6594      TCGA-50-6595      TCGA-55-1592      TCGA-55-1595 
"NPSR1 WILD-TYPE" "NPSR1 WILD-TYPE" "NPSR1 WILD-TYPE" "NPSR1 WILD-TYPE" 
     TCGA-55-6543      TCGA-55-6712      TCGA-64-1678      TCGA-64-1680 
"NPSR1 WILD-TYPE" "NPSR1 WILD-TYPE" "NPSR1 WILD-TYPE" "NPSR1 WILD-TYPE" 
     TCGA-64-5774      TCGA-64-5778      TCGA-64-5779      TCGA-64-5781 
"NPSR1 WILD-TYPE" "NPSR1 WILD-TYPE" "NPSR1 WILD-TYPE" "NPSR1 WILD-TYPE" 
     TCGA-64-5815      TCGA-67-6217      TCGA-73-4659      TCGA-73-4662 
"NPSR1 WILD-TYPE" "NPSR1 WILD-TYPE" "NPSR1 WILD-TYPE" "NPSR1 WILD-TYPE" 
     TCGA-73-4666      TCGA-73-4668      TCGA-73-4670      TCGA-73-4675 
"NPSR1 WILD-TYPE" "NPSR1 WILD-TYPE" "NPSR1 WILD-TYPE" "NPSR1 WILD-TYPE" 
     TCGA-73-4676      TCGA-73-4677      TCGA-75-5122      TCGA-75-5125 
"NPSR1 WILD-TYPE" "NPSR1 WILD-TYPE" "NPSR1 WILD-TYPE" "NPSR1 WILD-TYPE" 
     TCGA-75-5126      TCGA-75-5146      TCGA-75-6206      TCGA-75-6207 
"NPSR1 WILD-TYPE" "NPSR1 WILD-TYPE" "NPSR1 WILD-TYPE" "NPSR1 WILD-TYPE" 
     TCGA-80-5611      TCGA-91-6828      TCGA-91-6829      TCGA-91-6835 
"NPSR1 WILD-TYPE" "NPSR1 WILD-TYPE" "NPSR1 WILD-TYPE" "NPSR1 WILD-TYPE" 
D195V13, multiclass
                                             clus
vv                                            NPSR1 MUTATED NPSR1 WILD-TYPE
  CURRENT REFORMED SMOKER FOR < OR = 15 YEARS             2              60
  CURRENT REFORMED SMOKER FOR > 15 YEARS                  1              45
  CURRENT SMOKER                                          1              27
  LIFELONG NON-SMOKER                                     0              24
D195V14, continuous
[1] "Remove cluster labels:" "NPSR1 MUTATED"         
clus
  NPSR1 MUTATED NPSR1 WILD-TYPE 
              2              66 
     TCGA-05-4384      TCGA-05-4390      TCGA-05-4396      TCGA-05-4405 
"NPSR1 WILD-TYPE" "NPSR1 WILD-TYPE" "NPSR1 WILD-TYPE" "NPSR1 WILD-TYPE" 
     TCGA-05-4415      TCGA-05-4417      TCGA-05-4424      TCGA-05-4427 
"NPSR1 WILD-TYPE" "NPSR1 WILD-TYPE" "NPSR1 WILD-TYPE" "NPSR1 WILD-TYPE" 
     TCGA-05-4433      TCGA-05-5420      TCGA-05-5423      TCGA-05-5425 
"NPSR1 WILD-TYPE" "NPSR1 WILD-TYPE" "NPSR1 WILD-TYPE" "NPSR1 WILD-TYPE" 
     TCGA-05-5428      TCGA-35-4122      TCGA-35-4123      TCGA-35-5375 
"NPSR1 WILD-TYPE" "NPSR1 WILD-TYPE" "NPSR1 WILD-TYPE" "NPSR1 WILD-TYPE" 
     TCGA-38-4625      TCGA-38-4626      TCGA-44-2655      TCGA-44-2656 
"NPSR1 WILD-TYPE" "NPSR1 WILD-TYPE" "NPSR1 WILD-TYPE" "NPSR1 WILD-TYPE" 
     TCGA-44-2657      TCGA-44-2659      TCGA-44-2662      TCGA-44-2666 
"NPSR1 WILD-TYPE" "NPSR1 WILD-TYPE" "NPSR1 WILD-TYPE" "NPSR1 WILD-TYPE" 
     TCGA-44-2668      TCGA-44-3396      TCGA-44-3398      TCGA-44-3918 
"NPSR1 WILD-TYPE" "NPSR1 WILD-TYPE" "NPSR1 WILD-TYPE" "NPSR1 WILD-TYPE" 
     TCGA-44-5645      TCGA-44-6144      TCGA-44-6145      TCGA-44-6147 
"NPSR1 WILD-TYPE" "NPSR1 WILD-TYPE" "NPSR1 WILD-TYPE" "NPSR1 WILD-TYPE" 
     TCGA-44-6148      TCGA-44-6774      TCGA-44-6775      TCGA-44-6776 
"NPSR1 WILD-TYPE" "NPSR1 WILD-TYPE" "NPSR1 WILD-TYPE" "NPSR1 WILD-TYPE" 
     TCGA-44-6777      TCGA-44-6778      TCGA-44-6779      TCGA-49-4486 
"NPSR1 WILD-TYPE" "NPSR1 WILD-TYPE" "NPSR1 WILD-TYPE" "NPSR1 WILD-TYPE" 
     TCGA-49-4494      TCGA-49-4505      TCGA-55-1592      TCGA-55-1594 
"NPSR1 WILD-TYPE" "NPSR1 WILD-TYPE" "NPSR1 WILD-TYPE" "NPSR1 WILD-TYPE" 
     TCGA-55-1595      TCGA-55-1596      TCGA-55-5899      TCGA-55-6642 
"NPSR1 WILD-TYPE" "NPSR1 WILD-TYPE" "NPSR1 WILD-TYPE" "NPSR1 WILD-TYPE" 
     TCGA-55-6712      TCGA-64-1677      TCGA-64-1678      TCGA-64-1680 
"NPSR1 WILD-TYPE" "NPSR1 WILD-TYPE" "NPSR1 WILD-TYPE" "NPSR1 WILD-TYPE" 
     TCGA-64-5774      TCGA-64-5775      TCGA-64-5778      TCGA-64-5779 
"NPSR1 WILD-TYPE" "NPSR1 WILD-TYPE" "NPSR1 WILD-TYPE" "NPSR1 WILD-TYPE" 
     TCGA-64-5781      TCGA-73-4659      TCGA-73-4662      TCGA-73-4666 
"NPSR1 WILD-TYPE" "NPSR1 WILD-TYPE" "NPSR1 WILD-TYPE" "NPSR1 WILD-TYPE" 
     TCGA-73-4668      TCGA-73-4670      TCGA-73-4675      TCGA-73-4676 
"NPSR1 WILD-TYPE" "NPSR1 WILD-TYPE" "NPSR1 WILD-TYPE" "NPSR1 WILD-TYPE" 
     TCGA-91-6829      TCGA-91-6836 
"NPSR1 WILD-TYPE" "NPSR1 WILD-TYPE" 

Clustering(196) Variable = LOC440563 MUTATION ANALYSIS
D196V1, survival
                     sevent
clus2                  0  1
  LOC440563 MUTATED    5  1
  LOC440563 WILD-TYPE 94 49
  LOC440563 MUTATED LOC440563 WILD-TYPE 
                  6                 143 
  LOC440563 MUTATED LOC440563 WILD-TYPE 
                  1                  49 
$`LOC440563 MUTATED`
TCGA-05-4402 TCGA-35-4122 TCGA-44-6147 TCGA-64-5781 TCGA-67-6216 TCGA-91-6828 
        8.02         7.36         7.76        39.52         0.69         1.22 

$`LOC440563 WILD-TYPE`
TCGA-05-4249 TCGA-05-4250 TCGA-05-4382 TCGA-05-4384 TCGA-05-4390 TCGA-05-4396 
       38.07         3.98        19.92        14.01        37.02         9.96 
TCGA-05-4397 TCGA-05-4398 TCGA-05-4405 TCGA-05-4415 TCGA-05-4417 TCGA-05-4418 
       24.03        47.05        20.05         2.96        14.93         8.98 
TCGA-05-4420 TCGA-05-4424 TCGA-05-4426 TCGA-05-4427 TCGA-05-4430 TCGA-05-4432 
       29.95        30.02        26.01        26.01        25.02        25.02 
TCGA-05-4433 TCGA-05-4434 TCGA-05-5420 TCGA-05-5423 TCGA-05-5425 TCGA-05-5429 
       24.00        15.02         1.02         4.96         2.96         0.99 
TCGA-05-5715 TCGA-35-3615 TCGA-35-4123 TCGA-35-5375 TCGA-38-4625 TCGA-38-4626 
        2.04         0.46         5.95         8.68        47.61        85.32 
TCGA-38-4627 TCGA-38-4628 TCGA-38-4629 TCGA-38-4630 TCGA-38-4631 TCGA-38-4632 
       37.71        49.02        28.37        35.28        11.64        44.61 
TCGA-38-6178 TCGA-44-2655 TCGA-44-2656 TCGA-44-2657 TCGA-44-2659 TCGA-44-2661 
        5.19        18.87        19.10        13.15        17.39         3.39 
TCGA-44-2662 TCGA-44-2665 TCGA-44-2666 TCGA-44-2668 TCGA-44-3396 TCGA-44-3398 
       15.78        13.15         3.19         8.09        10.22         8.32 
TCGA-44-3918 TCGA-44-3919 TCGA-44-4112 TCGA-44-5643 TCGA-44-5645 TCGA-44-6144 
        6.44         6.21         4.60         3.48         6.84         0.30 
TCGA-44-6145 TCGA-44-6146 TCGA-44-6148 TCGA-44-6774 TCGA-44-6775 TCGA-44-6776 
        3.35         9.93         3.12         5.42         2.70        63.72 
TCGA-44-6777 TCGA-44-6778 TCGA-44-6779 TCGA-49-4486 TCGA-49-4487 TCGA-49-4488 
       32.45        36.49        16.41        76.21        28.11        28.57 
TCGA-49-4490 TCGA-49-4494 TCGA-49-4501 TCGA-49-4505 TCGA-49-4506 TCGA-49-4507 
       12.66        35.54        46.72        14.07        32.84         8.81 
TCGA-49-4510 TCGA-49-4512 TCGA-49-4514 TCGA-49-6742 TCGA-49-6743 TCGA-49-6744 
       29.46        29.75        43.20        15.02        12.13        12.99 
TCGA-49-6745 TCGA-50-5044 TCGA-50-5045 TCGA-50-5049 TCGA-50-5051 TCGA-50-5055 
        4.93        20.48        71.47        48.82        14.96        25.81 
TCGA-50-5066 TCGA-50-5068 TCGA-50-5072 TCGA-50-5930 TCGA-50-5931 TCGA-50-5932 
        9.76        49.28         8.05         9.27         8.78        35.87 
TCGA-50-5933 TCGA-50-5935 TCGA-50-5936 TCGA-50-5939 TCGA-50-5941 TCGA-50-5942 
       77.88        21.47         8.45        15.12         9.37         4.44 
TCGA-50-5944 TCGA-50-5946 TCGA-50-6590 TCGA-50-6591 TCGA-50-6592 TCGA-50-6593 
       12.26        11.47        42.31         3.88        25.51        11.05 
TCGA-50-6594 TCGA-50-6595 TCGA-50-6597 TCGA-55-1592 TCGA-55-1594 TCGA-55-1595 
       12.16         6.21        33.37        23.05        38.73        48.62 
TCGA-55-1596 TCGA-55-5899 TCGA-55-6543 TCGA-55-6642 TCGA-55-6712 TCGA-64-1676 
       45.17         2.86         0.07        32.61         0.79        56.81 
TCGA-64-1677 TCGA-64-1678 TCGA-64-1680 TCGA-64-5774 TCGA-64-5775 TCGA-64-5778 
       20.65        39.09        37.02        83.84         0.10        30.44 
TCGA-64-5779 TCGA-64-5815 TCGA-67-3770 TCGA-67-3771 TCGA-67-3772 TCGA-67-3773 
       16.67         7.33         0.99         1.97         0.59         2.04 
TCGA-67-3774 TCGA-67-6215 TCGA-67-6217 TCGA-71-6725 TCGA-73-4658 TCGA-73-4659 
        0.59         0.89        13.87         2.01        52.57        23.38 
TCGA-73-4662 TCGA-73-4666 TCGA-73-4668 TCGA-73-4670 TCGA-73-4675 TCGA-73-4676 
       29.95        20.28        15.35         0.46         1.32         4.01 
TCGA-73-4677 TCGA-91-6829 TCGA-91-6831 TCGA-91-6835 TCGA-91-6836 
        1.25        41.33         1.28         1.15         0.36 

  LOC440563 MUTATED LOC440563 WILD-TYPE 
               0.69                0.07 
  LOC440563 MUTATED LOC440563 WILD-TYPE 
              39.52               85.32 
  LOC440563 MUTATED LOC440563 WILD-TYPE 
               7.56               14.07 
[1] "0.7 - 39.5 (7.6)"  "0.1 - 85.3 (14.1)"
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"LOC440563 WILD-TYPE" "LOC440563 WILD-TYPE" "LOC440563 WILD-TYPE" 
         TCGA-44-6777          TCGA-44-6778          TCGA-44-6779 
"LOC440563 WILD-TYPE" "LOC440563 WILD-TYPE" "LOC440563 WILD-TYPE" 
         TCGA-49-4486          TCGA-49-4487          TCGA-49-4488 
"LOC440563 WILD-TYPE" "LOC440563 WILD-TYPE" "LOC440563 WILD-TYPE" 
         TCGA-49-4490          TCGA-49-4494          TCGA-49-4501 
"LOC440563 WILD-TYPE" "LOC440563 WILD-TYPE" "LOC440563 WILD-TYPE" 
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"LOC440563 WILD-TYPE" "LOC440563 WILD-TYPE" "LOC440563 WILD-TYPE" 
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"LOC440563 WILD-TYPE" "LOC440563 WILD-TYPE" "LOC440563 WILD-TYPE" 
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"LOC440563 WILD-TYPE" "LOC440563 WILD-TYPE" "LOC440563 WILD-TYPE" 
         TCGA-49-6745          TCGA-50-5044          TCGA-50-5045 
"LOC440563 WILD-TYPE" "LOC440563 WILD-TYPE" "LOC440563 WILD-TYPE" 
         TCGA-50-5049          TCGA-50-5051          TCGA-50-5055 
"LOC440563 WILD-TYPE" "LOC440563 WILD-TYPE" "LOC440563 WILD-TYPE" 
         TCGA-50-5066          TCGA-50-5068          TCGA-50-5072 
"LOC440563 WILD-TYPE" "LOC440563 WILD-TYPE" "LOC440563 WILD-TYPE" 
         TCGA-50-5930          TCGA-50-5931          TCGA-50-5932 
"LOC440563 WILD-TYPE" "LOC440563 WILD-TYPE" "LOC440563 WILD-TYPE" 
         TCGA-50-5933          TCGA-50-5935          TCGA-50-5936 
"LOC440563 WILD-TYPE" "LOC440563 WILD-TYPE" "LOC440563 WILD-TYPE" 
         TCGA-50-5939          TCGA-50-5941          TCGA-50-5942 
"LOC440563 WILD-TYPE" "LOC440563 WILD-TYPE" "LOC440563 WILD-TYPE" 
         TCGA-50-5944          TCGA-50-5946          TCGA-50-6590 
"LOC440563 WILD-TYPE" "LOC440563 WILD-TYPE" "LOC440563 WILD-TYPE" 
         TCGA-50-6591          TCGA-50-6592          TCGA-50-6593 
"LOC440563 WILD-TYPE" "LOC440563 WILD-TYPE" "LOC440563 WILD-TYPE" 
         TCGA-50-6594          TCGA-50-6595          TCGA-50-6597 
"LOC440563 WILD-TYPE" "LOC440563 WILD-TYPE" "LOC440563 WILD-TYPE" 
         TCGA-55-1592          TCGA-55-1594          TCGA-55-1595 
"LOC440563 WILD-TYPE" "LOC440563 WILD-TYPE" "LOC440563 WILD-TYPE" 
         TCGA-55-1596          TCGA-55-5899          TCGA-55-6543 
"LOC440563 WILD-TYPE" "LOC440563 WILD-TYPE" "LOC440563 WILD-TYPE" 
         TCGA-55-6642          TCGA-55-6712          TCGA-64-1676 
"LOC440563 WILD-TYPE" "LOC440563 WILD-TYPE" "LOC440563 WILD-TYPE" 
         TCGA-64-1677          TCGA-64-1678          TCGA-64-1680 
"LOC440563 WILD-TYPE" "LOC440563 WILD-TYPE" "LOC440563 WILD-TYPE" 
         TCGA-64-5774          TCGA-64-5775          TCGA-64-5778 
"LOC440563 WILD-TYPE" "LOC440563 WILD-TYPE" "LOC440563 WILD-TYPE" 
         TCGA-64-5779          TCGA-64-5781          TCGA-64-5815 
"LOC440563 WILD-TYPE"   "LOC440563 MUTATED" "LOC440563 WILD-TYPE" 
         TCGA-67-3770          TCGA-67-3771          TCGA-67-3772 
"LOC440563 WILD-TYPE" "LOC440563 WILD-TYPE" "LOC440563 WILD-TYPE" 
         TCGA-67-3773          TCGA-67-3774          TCGA-67-6215 
"LOC440563 WILD-TYPE" "LOC440563 WILD-TYPE" "LOC440563 WILD-TYPE" 
         TCGA-67-6216          TCGA-67-6217          TCGA-71-6725 
  "LOC440563 MUTATED" "LOC440563 WILD-TYPE" "LOC440563 WILD-TYPE" 
         TCGA-73-4658          TCGA-73-4659          TCGA-73-4662 
"LOC440563 WILD-TYPE" "LOC440563 WILD-TYPE" "LOC440563 WILD-TYPE" 
         TCGA-73-4666          TCGA-73-4668          TCGA-73-4670 
"LOC440563 WILD-TYPE" "LOC440563 WILD-TYPE" "LOC440563 WILD-TYPE" 
         TCGA-73-4675          TCGA-73-4676          TCGA-73-4677 
"LOC440563 WILD-TYPE" "LOC440563 WILD-TYPE" "LOC440563 WILD-TYPE" 
         TCGA-91-6828          TCGA-91-6829          TCGA-91-6831 
  "LOC440563 MUTATED" "LOC440563 WILD-TYPE" "LOC440563 WILD-TYPE" 
         TCGA-91-6835          TCGA-91-6836 
"LOC440563 WILD-TYPE" "LOC440563 WILD-TYPE" 
         TCGA-05-4249          TCGA-05-4250          TCGA-05-4382 
"LOC440563 WILD-TYPE" "LOC440563 WILD-TYPE" "LOC440563 WILD-TYPE" 
         TCGA-05-4384          TCGA-05-4390          TCGA-05-4396 
"LOC440563 WILD-TYPE" "LOC440563 WILD-TYPE" "LOC440563 WILD-TYPE" 
         TCGA-05-4397          TCGA-05-4398          TCGA-05-4402 
"LOC440563 WILD-TYPE" "LOC440563 WILD-TYPE"   "LOC440563 MUTATED" 
         TCGA-05-4405          TCGA-05-4415          TCGA-05-4417 
"LOC440563 WILD-TYPE" "LOC440563 WILD-TYPE" "LOC440563 WILD-TYPE" 
         TCGA-05-4418          TCGA-05-4420          TCGA-05-4424 
"LOC440563 WILD-TYPE" "LOC440563 WILD-TYPE" "LOC440563 WILD-TYPE" 
         TCGA-05-4426          TCGA-05-4427          TCGA-05-4430 
"LOC440563 WILD-TYPE" "LOC440563 WILD-TYPE" "LOC440563 WILD-TYPE" 
         TCGA-05-4432          TCGA-05-4433          TCGA-05-4434 
"LOC440563 WILD-TYPE" "LOC440563 WILD-TYPE" "LOC440563 WILD-TYPE" 
         TCGA-05-5420          TCGA-05-5423          TCGA-05-5425 
"LOC440563 WILD-TYPE" "LOC440563 WILD-TYPE" "LOC440563 WILD-TYPE" 
         TCGA-05-5429          TCGA-05-5715          TCGA-35-3615 
"LOC440563 WILD-TYPE" "LOC440563 WILD-TYPE" "LOC440563 WILD-TYPE" 
         TCGA-35-4122          TCGA-35-4123          TCGA-35-5375 
  "LOC440563 MUTATED" "LOC440563 WILD-TYPE" "LOC440563 WILD-TYPE" 
         TCGA-38-4625          TCGA-38-4626          TCGA-38-4627 
"LOC440563 WILD-TYPE" "LOC440563 WILD-TYPE" "LOC440563 WILD-TYPE" 
         TCGA-38-4628          TCGA-38-4629          TCGA-38-4630 
"LOC440563 WILD-TYPE" "LOC440563 WILD-TYPE" "LOC440563 WILD-TYPE" 
         TCGA-38-4631          TCGA-38-4632          TCGA-38-6178 
"LOC440563 WILD-TYPE" "LOC440563 WILD-TYPE" "LOC440563 WILD-TYPE" 
         TCGA-44-2655          TCGA-44-2656          TCGA-44-2657 
"LOC440563 WILD-TYPE" "LOC440563 WILD-TYPE" "LOC440563 WILD-TYPE" 
         TCGA-44-2659          TCGA-44-2661          TCGA-44-2662 
"LOC440563 WILD-TYPE" "LOC440563 WILD-TYPE" "LOC440563 WILD-TYPE" 
         TCGA-44-2665          TCGA-44-2666          TCGA-44-2668 
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         TCGA-44-3396          TCGA-44-3398          TCGA-44-3918 
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         TCGA-44-3919          TCGA-44-4112          TCGA-44-5643 
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         TCGA-44-6774          TCGA-44-6775          TCGA-44-6776 
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         TCGA-44-6777          TCGA-44-6778          TCGA-44-6779 
"LOC440563 WILD-TYPE" "LOC440563 WILD-TYPE" "LOC440563 WILD-TYPE" 
         TCGA-49-4486          TCGA-49-4487          TCGA-49-4488 
"LOC440563 WILD-TYPE" "LOC440563 WILD-TYPE" "LOC440563 WILD-TYPE" 
         TCGA-49-4490          TCGA-49-4494          TCGA-49-4501 
"LOC440563 WILD-TYPE" "LOC440563 WILD-TYPE" "LOC440563 WILD-TYPE" 
         TCGA-49-4505          TCGA-49-4506          TCGA-49-4507 
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         TCGA-49-4510          TCGA-49-4512          TCGA-49-4514 
"LOC440563 WILD-TYPE" "LOC440563 WILD-TYPE" "LOC440563 WILD-TYPE" 
         TCGA-49-6742          TCGA-49-6743          TCGA-49-6744 
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         TCGA-49-6745          TCGA-50-5044          TCGA-50-5045 
"LOC440563 WILD-TYPE" "LOC440563 WILD-TYPE" "LOC440563 WILD-TYPE" 
         TCGA-50-5049          TCGA-50-5051          TCGA-50-5055 
"LOC440563 WILD-TYPE" "LOC440563 WILD-TYPE" "LOC440563 WILD-TYPE" 
         TCGA-50-5066          TCGA-50-5068          TCGA-50-5072 
"LOC440563 WILD-TYPE" "LOC440563 WILD-TYPE" "LOC440563 WILD-TYPE" 
         TCGA-50-5930          TCGA-50-5931          TCGA-50-5932 
"LOC440563 WILD-TYPE" "LOC440563 WILD-TYPE" "LOC440563 WILD-TYPE" 
         TCGA-50-5933          TCGA-50-5935          TCGA-50-5936 
"LOC440563 WILD-TYPE" "LOC440563 WILD-TYPE" "LOC440563 WILD-TYPE" 
         TCGA-50-5939          TCGA-50-5941          TCGA-50-5942 
"LOC440563 WILD-TYPE" "LOC440563 WILD-TYPE" "LOC440563 WILD-TYPE" 
         TCGA-50-5944          TCGA-50-5946          TCGA-50-6590 
"LOC440563 WILD-TYPE" "LOC440563 WILD-TYPE" "LOC440563 WILD-TYPE" 
         TCGA-50-6591          TCGA-50-6592          TCGA-50-6593 
"LOC440563 WILD-TYPE" "LOC440563 WILD-TYPE" "LOC440563 WILD-TYPE" 
         TCGA-50-6594          TCGA-50-6595          TCGA-50-6597 
"LOC440563 WILD-TYPE" "LOC440563 WILD-TYPE" "LOC440563 WILD-TYPE" 
         TCGA-55-1592          TCGA-55-1594          TCGA-55-1595 
"LOC440563 WILD-TYPE" "LOC440563 WILD-TYPE" "LOC440563 WILD-TYPE" 
         TCGA-55-1596          TCGA-55-5899          TCGA-55-6543 
"LOC440563 WILD-TYPE" "LOC440563 WILD-TYPE" "LOC440563 WILD-TYPE" 
         TCGA-55-6642          TCGA-55-6712          TCGA-64-1676 
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         TCGA-64-1677          TCGA-64-1678          TCGA-64-1680 
"LOC440563 WILD-TYPE" "LOC440563 WILD-TYPE" "LOC440563 WILD-TYPE" 
         TCGA-64-5774          TCGA-64-5775          TCGA-64-5778 
"LOC440563 WILD-TYPE" "LOC440563 WILD-TYPE" "LOC440563 WILD-TYPE" 
         TCGA-64-5779          TCGA-64-5781          TCGA-64-5815 
"LOC440563 WILD-TYPE"   "LOC440563 MUTATED" "LOC440563 WILD-TYPE" 
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  "LOC440563 MUTATED" "LOC440563 WILD-TYPE" "LOC440563 WILD-TYPE" 
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"LOC440563 WILD-TYPE" "LOC440563 WILD-TYPE" "LOC440563 WILD-TYPE" 
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"LOC440563 WILD-TYPE" "LOC440563 WILD-TYPE" "LOC440563 WILD-TYPE" 
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"LOC440563 WILD-TYPE" "LOC440563 WILD-TYPE" 
         TCGA-05-4249          TCGA-05-4250          TCGA-05-4382 
"LOC440563 WILD-TYPE" "LOC440563 WILD-TYPE" "LOC440563 WILD-TYPE" 
         TCGA-05-4384          TCGA-05-4390          TCGA-05-4396 
"LOC440563 WILD-TYPE" "LOC440563 WILD-TYPE" "LOC440563 WILD-TYPE" 
         TCGA-05-4397          TCGA-05-4398          TCGA-05-4402 
"LOC440563 WILD-TYPE" "LOC440563 WILD-TYPE"   "LOC440563 MUTATED" 
         TCGA-05-4405          TCGA-05-4415          TCGA-05-4417 
"LOC440563 WILD-TYPE" "LOC440563 WILD-TYPE" "LOC440563 WILD-TYPE" 
         TCGA-05-4418          TCGA-05-4420          TCGA-05-4424 
"LOC440563 WILD-TYPE" "LOC440563 WILD-TYPE" "LOC440563 WILD-TYPE" 
         TCGA-05-4426          TCGA-05-4427          TCGA-05-4430 
"LOC440563 WILD-TYPE" "LOC440563 WILD-TYPE" "LOC440563 WILD-TYPE" 
         TCGA-05-4432          TCGA-05-4433          TCGA-05-4434 
"LOC440563 WILD-TYPE" "LOC440563 WILD-TYPE" "LOC440563 WILD-TYPE" 
         TCGA-05-5420          TCGA-05-5423          TCGA-05-5425 
"LOC440563 WILD-TYPE" "LOC440563 WILD-TYPE" "LOC440563 WILD-TYPE" 
         TCGA-05-5429          TCGA-05-5715          TCGA-35-3615 
"LOC440563 WILD-TYPE" "LOC440563 WILD-TYPE" "LOC440563 WILD-TYPE" 
         TCGA-35-4122          TCGA-35-4123          TCGA-35-5375 
  "LOC440563 MUTATED" "LOC440563 WILD-TYPE" "LOC440563 WILD-TYPE" 
         TCGA-38-4625          TCGA-38-4626          TCGA-38-4627 
"LOC440563 WILD-TYPE" "LOC440563 WILD-TYPE" "LOC440563 WILD-TYPE" 
         TCGA-38-4628          TCGA-38-4629          TCGA-38-4630 
"LOC440563 WILD-TYPE" "LOC440563 WILD-TYPE" "LOC440563 WILD-TYPE" 
         TCGA-38-4631          TCGA-38-4632          TCGA-38-6178 
"LOC440563 WILD-TYPE" "LOC440563 WILD-TYPE" "LOC440563 WILD-TYPE" 
         TCGA-44-2655          TCGA-44-2656          TCGA-44-2657 
"LOC440563 WILD-TYPE" "LOC440563 WILD-TYPE" "LOC440563 WILD-TYPE" 
         TCGA-44-2659          TCGA-44-2661          TCGA-44-2662 
"LOC440563 WILD-TYPE" "LOC440563 WILD-TYPE" "LOC440563 WILD-TYPE" 
         TCGA-44-2665          TCGA-44-2666          TCGA-44-2668 
"LOC440563 WILD-TYPE" "LOC440563 WILD-TYPE" "LOC440563 WILD-TYPE" 
         TCGA-44-3396          TCGA-44-3398          TCGA-44-3918 
"LOC440563 WILD-TYPE" "LOC440563 WILD-TYPE" "LOC440563 WILD-TYPE" 
         TCGA-44-3919          TCGA-44-4112          TCGA-44-5643 
"LOC440563 WILD-TYPE" "LOC440563 WILD-TYPE" "LOC440563 WILD-TYPE" 
         TCGA-44-5645          TCGA-44-6144          TCGA-44-6145 
"LOC440563 WILD-TYPE" "LOC440563 WILD-TYPE" "LOC440563 WILD-TYPE" 
         TCGA-44-6146          TCGA-44-6147          TCGA-44-6148 
"LOC440563 WILD-TYPE"   "LOC440563 MUTATED" "LOC440563 WILD-TYPE" 
         TCGA-44-6774          TCGA-44-6775          TCGA-44-6776 
"LOC440563 WILD-TYPE" "LOC440563 WILD-TYPE" "LOC440563 WILD-TYPE" 
         TCGA-44-6777          TCGA-44-6778          TCGA-44-6779 
"LOC440563 WILD-TYPE" "LOC440563 WILD-TYPE" "LOC440563 WILD-TYPE" 
         TCGA-49-4486          TCGA-49-4487          TCGA-49-4488 
"LOC440563 WILD-TYPE" "LOC440563 WILD-TYPE" "LOC440563 WILD-TYPE" 
         TCGA-49-4490          TCGA-49-4494          TCGA-49-4501 
"LOC440563 WILD-TYPE" "LOC440563 WILD-TYPE" "LOC440563 WILD-TYPE" 
         TCGA-49-4505          TCGA-49-4506          TCGA-49-4507 
"LOC440563 WILD-TYPE" "LOC440563 WILD-TYPE" "LOC440563 WILD-TYPE" 
         TCGA-49-4510          TCGA-49-4512          TCGA-49-4514 
"LOC440563 WILD-TYPE" "LOC440563 WILD-TYPE" "LOC440563 WILD-TYPE" 
         TCGA-49-6742          TCGA-49-6743          TCGA-49-6744 
"LOC440563 WILD-TYPE" "LOC440563 WILD-TYPE" "LOC440563 WILD-TYPE" 
         TCGA-49-6745          TCGA-50-5044          TCGA-50-5045 
"LOC440563 WILD-TYPE" "LOC440563 WILD-TYPE" "LOC440563 WILD-TYPE" 
         TCGA-50-5049          TCGA-50-5051          TCGA-50-5055 
"LOC440563 WILD-TYPE" "LOC440563 WILD-TYPE" "LOC440563 WILD-TYPE" 
         TCGA-50-5066          TCGA-50-5068          TCGA-50-5072 
"LOC440563 WILD-TYPE" "LOC440563 WILD-TYPE" "LOC440563 WILD-TYPE" 
         TCGA-50-5930          TCGA-50-5931          TCGA-50-5932 
"LOC440563 WILD-TYPE" "LOC440563 WILD-TYPE" "LOC440563 WILD-TYPE" 
         TCGA-50-5933          TCGA-50-5935          TCGA-50-5936 
"LOC440563 WILD-TYPE" "LOC440563 WILD-TYPE" "LOC440563 WILD-TYPE" 
         TCGA-50-5939          TCGA-50-5941          TCGA-50-5942 
"LOC440563 WILD-TYPE" "LOC440563 WILD-TYPE" "LOC440563 WILD-TYPE" 
         TCGA-50-5944          TCGA-50-5946          TCGA-50-6590 
"LOC440563 WILD-TYPE" "LOC440563 WILD-TYPE" "LOC440563 WILD-TYPE" 
         TCGA-50-6591          TCGA-50-6592          TCGA-50-6593 
"LOC440563 WILD-TYPE" "LOC440563 WILD-TYPE" "LOC440563 WILD-TYPE" 
         TCGA-50-6594          TCGA-50-6595          TCGA-50-6597 
"LOC440563 WILD-TYPE" "LOC440563 WILD-TYPE" "LOC440563 WILD-TYPE" 
         TCGA-55-1592          TCGA-55-1594          TCGA-55-1595 
"LOC440563 WILD-TYPE" "LOC440563 WILD-TYPE" "LOC440563 WILD-TYPE" 
         TCGA-55-1596          TCGA-55-5899          TCGA-55-6543 
"LOC440563 WILD-TYPE" "LOC440563 WILD-TYPE" "LOC440563 WILD-TYPE" 
         TCGA-55-6642          TCGA-55-6712          TCGA-64-1676 
"LOC440563 WILD-TYPE" "LOC440563 WILD-TYPE" "LOC440563 WILD-TYPE" 
         TCGA-64-1677          TCGA-64-1678          TCGA-64-1680 
"LOC440563 WILD-TYPE" "LOC440563 WILD-TYPE" "LOC440563 WILD-TYPE" 
         TCGA-64-5774          TCGA-64-5775          TCGA-64-5778 
"LOC440563 WILD-TYPE" "LOC440563 WILD-TYPE" "LOC440563 WILD-TYPE" 
         TCGA-64-5779          TCGA-64-5781          TCGA-64-5815 
"LOC440563 WILD-TYPE"   "LOC440563 MUTATED" "LOC440563 WILD-TYPE" 
         TCGA-67-3770          TCGA-67-3771          TCGA-67-3772 
"LOC440563 WILD-TYPE" "LOC440563 WILD-TYPE" "LOC440563 WILD-TYPE" 
         TCGA-67-3773          TCGA-67-3774          TCGA-67-6215 
"LOC440563 WILD-TYPE" "LOC440563 WILD-TYPE" "LOC440563 WILD-TYPE" 
         TCGA-67-6216          TCGA-67-6217          TCGA-71-6725 
  "LOC440563 MUTATED" "LOC440563 WILD-TYPE" "LOC440563 WILD-TYPE" 
         TCGA-73-4658          TCGA-73-4659          TCGA-73-4662 
"LOC440563 WILD-TYPE" "LOC440563 WILD-TYPE" "LOC440563 WILD-TYPE" 
         TCGA-73-4666          TCGA-73-4668          TCGA-73-4670 
"LOC440563 WILD-TYPE" "LOC440563 WILD-TYPE" "LOC440563 WILD-TYPE" 
         TCGA-73-4675          TCGA-73-4676          TCGA-73-4677 
"LOC440563 WILD-TYPE" "LOC440563 WILD-TYPE" "LOC440563 WILD-TYPE" 
         TCGA-91-6828          TCGA-91-6829          TCGA-91-6831 
  "LOC440563 MUTATED" "LOC440563 WILD-TYPE" "LOC440563 WILD-TYPE" 
         TCGA-91-6835          TCGA-91-6836 
"LOC440563 WILD-TYPE" "LOC440563 WILD-TYPE" 
[1] "hr=" "1.1"
D196V2, continuous
D196V3, binary
[1] "tbl2"
                     cls
clus                  [,1] [,2]
  LOC440563 MUTATED      5    2
  LOC440563 WILD-TYPE   88   77
        clus
vv       LOC440563 MUTATED LOC440563 WILD-TYPE
  FEMALE                 5                  88
  MALE                   2                  77
D196V4, continuous
[1] "Remove cluster labels:" "LOC440563 MUTATED"     
clus
  LOC440563 MUTATED LOC440563 WILD-TYPE 
                  1                  11 
         TCGA-35-4123          TCGA-35-5375          TCGA-64-1677 
"LOC440563 WILD-TYPE" "LOC440563 WILD-TYPE" "LOC440563 WILD-TYPE" 
         TCGA-64-5778          TCGA-71-6725          TCGA-73-4659 
"LOC440563 WILD-TYPE" "LOC440563 WILD-TYPE" "LOC440563 WILD-TYPE" 
         TCGA-73-4662          TCGA-73-4666          TCGA-73-4668 
"LOC440563 WILD-TYPE" "LOC440563 WILD-TYPE" "LOC440563 WILD-TYPE" 
         TCGA-73-4676          TCGA-75-5122 
"LOC440563 WILD-TYPE" "LOC440563 WILD-TYPE" 
D196V5, multiclass
D196V6, multiclass
    clus
vv   LOC440563 MUTATED LOC440563 WILD-TYPE
  T1                 4                  37
  T2                 2                 106
  T3                 1                  13
  T4                 0                   8
D196V7, multiclass
       clus
vv      LOC440563 MUTATED LOC440563 WILD-TYPE
  N0                    4                  91
  N1                    0                  37
  N2+N3                 1                  34
D196V8, multiclass
    clus
vv   LOC440563 MUTATED LOC440563 WILD-TYPE
  M0                 5                 132
  M1                 1                   8
  MX                 1                  21
D196V9, multiclass
     clus
vv    LOC440563 MUTATED LOC440563 WILD-TYPE
  I                   5                  83
  II                  0                  33
  III                 1                  38
  IV                  1                   8
D196V10, binary
[1] "tbl2"
                     cls
clus                  [,1] [,2]
  LOC440563 MUTATED      0    7
  LOC440563 WILD-TYPE   16  149
     clus
vv    LOC440563 MUTATED LOC440563 WILD-TYPE
  NO                  0                  16
  YES                 7                 149
D196V11, continuous
D196V12, continuous
D196V13, multiclass
                                             clus
vv                                            LOC440563 MUTATED
  CURRENT REFORMED SMOKER FOR < OR = 15 YEARS                 3
  CURRENT REFORMED SMOKER FOR > 15 YEARS                      2
  CURRENT SMOKER                                              0
  LIFELONG NON-SMOKER                                         2
                                             clus
vv                                            LOC440563 WILD-TYPE
  CURRENT REFORMED SMOKER FOR < OR = 15 YEARS                  59
  CURRENT REFORMED SMOKER FOR > 15 YEARS                       44
  CURRENT SMOKER                                               28
  LIFELONG NON-SMOKER                                          22
D196V14, continuous

Clustering(197) Variable = COL25A1 MUTATION ANALYSIS
D197V1, survival
                   sevent
clus2                0  1
  COL25A1 MUTATED    5  3
  COL25A1 WILD-TYPE 94 47
  COL25A1 MUTATED COL25A1 WILD-TYPE 
                8               141 
  COL25A1 MUTATED COL25A1 WILD-TYPE 
                3                47 
$`COL25A1 MUTATED`
TCGA-05-4382 TCGA-05-4396 TCGA-05-5715 TCGA-38-4631 TCGA-44-2656 TCGA-44-2665 
       19.92         9.96         2.04        11.64        19.10        13.15 
TCGA-44-3398 TCGA-49-4510 
        8.32        29.46 

$`COL25A1 WILD-TYPE`
TCGA-05-4249 TCGA-05-4250 TCGA-05-4384 TCGA-05-4390 TCGA-05-4397 TCGA-05-4398 
       38.07         3.98        14.01        37.02        24.03        47.05 
TCGA-05-4402 TCGA-05-4405 TCGA-05-4415 TCGA-05-4417 TCGA-05-4418 TCGA-05-4420 
        8.02        20.05         2.96        14.93         8.98        29.95 
TCGA-05-4424 TCGA-05-4426 TCGA-05-4427 TCGA-05-4430 TCGA-05-4432 TCGA-05-4433 
       30.02        26.01        26.01        25.02        25.02        24.00 
TCGA-05-4434 TCGA-05-5420 TCGA-05-5423 TCGA-05-5425 TCGA-05-5429 TCGA-35-3615 
       15.02         1.02         4.96         2.96         0.99         0.46 
TCGA-35-4122 TCGA-35-4123 TCGA-35-5375 TCGA-38-4625 TCGA-38-4626 TCGA-38-4627 
        7.36         5.95         8.68        47.61        85.32        37.71 
TCGA-38-4628 TCGA-38-4629 TCGA-38-4630 TCGA-38-4632 TCGA-38-6178 TCGA-44-2655 
       49.02        28.37        35.28        44.61         5.19        18.87 
TCGA-44-2657 TCGA-44-2659 TCGA-44-2661 TCGA-44-2662 TCGA-44-2666 TCGA-44-2668 
       13.15        17.39         3.39        15.78         3.19         8.09 
TCGA-44-3396 TCGA-44-3918 TCGA-44-3919 TCGA-44-4112 TCGA-44-5643 TCGA-44-5645 
       10.22         6.44         6.21         4.60         3.48         6.84 
TCGA-44-6144 TCGA-44-6145 TCGA-44-6146 TCGA-44-6147 TCGA-44-6148 TCGA-44-6774 
        0.30         3.35         9.93         7.76         3.12         5.42 
TCGA-44-6775 TCGA-44-6776 TCGA-44-6777 TCGA-44-6778 TCGA-44-6779 TCGA-49-4486 
        2.70        63.72        32.45        36.49        16.41        76.21 
TCGA-49-4487 TCGA-49-4488 TCGA-49-4490 TCGA-49-4494 TCGA-49-4501 TCGA-49-4505 
       28.11        28.57        12.66        35.54        46.72        14.07 
TCGA-49-4506 TCGA-49-4507 TCGA-49-4512 TCGA-49-4514 TCGA-49-6742 TCGA-49-6743 
       32.84         8.81        29.75        43.20        15.02        12.13 
TCGA-49-6744 TCGA-49-6745 TCGA-50-5044 TCGA-50-5045 TCGA-50-5049 TCGA-50-5051 
       12.99         4.93        20.48        71.47        48.82        14.96 
TCGA-50-5055 TCGA-50-5066 TCGA-50-5068 TCGA-50-5072 TCGA-50-5930 TCGA-50-5931 
       25.81         9.76        49.28         8.05         9.27         8.78 
TCGA-50-5932 TCGA-50-5933 TCGA-50-5935 TCGA-50-5936 TCGA-50-5939 TCGA-50-5941 
       35.87        77.88        21.47         8.45        15.12         9.37 
TCGA-50-5942 TCGA-50-5944 TCGA-50-5946 TCGA-50-6590 TCGA-50-6591 TCGA-50-6592 
        4.44        12.26        11.47        42.31         3.88        25.51 
TCGA-50-6593 TCGA-50-6594 TCGA-50-6595 TCGA-50-6597 TCGA-55-1592 TCGA-55-1594 
       11.05        12.16         6.21        33.37        23.05        38.73 
TCGA-55-1595 TCGA-55-1596 TCGA-55-5899 TCGA-55-6543 TCGA-55-6642 TCGA-55-6712 
       48.62        45.17         2.86         0.07        32.61         0.79 
TCGA-64-1676 TCGA-64-1677 TCGA-64-1678 TCGA-64-1680 TCGA-64-5774 TCGA-64-5775 
       56.81        20.65        39.09        37.02        83.84         0.10 
TCGA-64-5778 TCGA-64-5779 TCGA-64-5781 TCGA-64-5815 TCGA-67-3770 TCGA-67-3771 
       30.44        16.67        39.52         7.33         0.99         1.97 
TCGA-67-3772 TCGA-67-3773 TCGA-67-3774 TCGA-67-6215 TCGA-67-6216 TCGA-67-6217 
        0.59         2.04         0.59         0.89         0.69        13.87 
TCGA-71-6725 TCGA-73-4658 TCGA-73-4659 TCGA-73-4662 TCGA-73-4666 TCGA-73-4668 
        2.01        52.57        23.38        29.95        20.28        15.35 
TCGA-73-4670 TCGA-73-4675 TCGA-73-4676 TCGA-73-4677 TCGA-91-6828 TCGA-91-6829 
        0.46         1.32         4.01         1.25         1.22        41.33 
TCGA-91-6831 TCGA-91-6835 TCGA-91-6836 
        1.28         1.15         0.36 

  COL25A1 MUTATED COL25A1 WILD-TYPE 
             2.04              0.07 
  COL25A1 MUTATED COL25A1 WILD-TYPE 
            29.46             85.32 
  COL25A1 MUTATED COL25A1 WILD-TYPE 
           12.395            14.010 
[1] "2.0 - 29.5 (12.4)" "0.1 - 85.3 (14.0)"
       TCGA-05-4249        TCGA-05-4250        TCGA-05-4382        TCGA-05-4384 
"COL25A1 WILD-TYPE" "COL25A1 WILD-TYPE"   "COL25A1 MUTATED" "COL25A1 WILD-TYPE" 
       TCGA-05-4390        TCGA-05-4396        TCGA-05-4397        TCGA-05-4398 
"COL25A1 WILD-TYPE"   "COL25A1 MUTATED" "COL25A1 WILD-TYPE" "COL25A1 WILD-TYPE" 
       TCGA-05-4402        TCGA-05-4405        TCGA-05-4415        TCGA-05-4417 
"COL25A1 WILD-TYPE" "COL25A1 WILD-TYPE" "COL25A1 WILD-TYPE" "COL25A1 WILD-TYPE" 
       TCGA-05-4418        TCGA-05-4420        TCGA-05-4424        TCGA-05-4426 
"COL25A1 WILD-TYPE" "COL25A1 WILD-TYPE" "COL25A1 WILD-TYPE" "COL25A1 WILD-TYPE" 
       TCGA-05-4427        TCGA-05-4430        TCGA-05-4432        TCGA-05-4433 
"COL25A1 WILD-TYPE" "COL25A1 WILD-TYPE" "COL25A1 WILD-TYPE" "COL25A1 WILD-TYPE" 
       TCGA-05-4434        TCGA-05-5420        TCGA-05-5423        TCGA-05-5425 
"COL25A1 WILD-TYPE" "COL25A1 WILD-TYPE" "COL25A1 WILD-TYPE" "COL25A1 WILD-TYPE" 
       TCGA-05-5429        TCGA-05-5715        TCGA-35-3615        TCGA-35-4122 
"COL25A1 WILD-TYPE"   "COL25A1 MUTATED" "COL25A1 WILD-TYPE" "COL25A1 WILD-TYPE" 
       TCGA-35-4123        TCGA-35-5375        TCGA-38-4625        TCGA-38-4626 
"COL25A1 WILD-TYPE" "COL25A1 WILD-TYPE" "COL25A1 WILD-TYPE" "COL25A1 WILD-TYPE" 
       TCGA-38-4627        TCGA-38-4628        TCGA-38-4629        TCGA-38-4630 
"COL25A1 WILD-TYPE" "COL25A1 WILD-TYPE" "COL25A1 WILD-TYPE" "COL25A1 WILD-TYPE" 
       TCGA-38-4631        TCGA-38-4632        TCGA-38-6178        TCGA-44-2655 
  "COL25A1 MUTATED" "COL25A1 WILD-TYPE" "COL25A1 WILD-TYPE" "COL25A1 WILD-TYPE" 
       TCGA-44-2656        TCGA-44-2657        TCGA-44-2659        TCGA-44-2661 
  "COL25A1 MUTATED" "COL25A1 WILD-TYPE" "COL25A1 WILD-TYPE" "COL25A1 WILD-TYPE" 
       TCGA-44-2662        TCGA-44-2665        TCGA-44-2666        TCGA-44-2668 
"COL25A1 WILD-TYPE"   "COL25A1 MUTATED" "COL25A1 WILD-TYPE" "COL25A1 WILD-TYPE" 
       TCGA-44-3396        TCGA-44-3398        TCGA-44-3918        TCGA-44-3919 
"COL25A1 WILD-TYPE"   "COL25A1 MUTATED" "COL25A1 WILD-TYPE" "COL25A1 WILD-TYPE" 
       TCGA-44-4112        TCGA-44-5643        TCGA-44-5645        TCGA-44-6144 
"COL25A1 WILD-TYPE" "COL25A1 WILD-TYPE" "COL25A1 WILD-TYPE" "COL25A1 WILD-TYPE" 
       TCGA-44-6145        TCGA-44-6146        TCGA-44-6147        TCGA-44-6148 
"COL25A1 WILD-TYPE" "COL25A1 WILD-TYPE" "COL25A1 WILD-TYPE" "COL25A1 WILD-TYPE" 
       TCGA-44-6774        TCGA-44-6775        TCGA-44-6776        TCGA-44-6777 
"COL25A1 WILD-TYPE" "COL25A1 WILD-TYPE" "COL25A1 WILD-TYPE" "COL25A1 WILD-TYPE" 
       TCGA-44-6778        TCGA-44-6779        TCGA-49-4486        TCGA-49-4487 
"COL25A1 WILD-TYPE" "COL25A1 WILD-TYPE" "COL25A1 WILD-TYPE" "COL25A1 WILD-TYPE" 
       TCGA-49-4488        TCGA-49-4490        TCGA-49-4494        TCGA-49-4501 
"COL25A1 WILD-TYPE" "COL25A1 WILD-TYPE" "COL25A1 WILD-TYPE" "COL25A1 WILD-TYPE" 
       TCGA-49-4505        TCGA-49-4506        TCGA-49-4507        TCGA-49-4510 
"COL25A1 WILD-TYPE" "COL25A1 WILD-TYPE" "COL25A1 WILD-TYPE"   "COL25A1 MUTATED" 
       TCGA-49-4512        TCGA-49-4514        TCGA-49-6742        TCGA-49-6743 
"COL25A1 WILD-TYPE" "COL25A1 WILD-TYPE" "COL25A1 WILD-TYPE" "COL25A1 WILD-TYPE" 
       TCGA-49-6744        TCGA-49-6745        TCGA-50-5044        TCGA-50-5045 
"COL25A1 WILD-TYPE" "COL25A1 WILD-TYPE" "COL25A1 WILD-TYPE" "COL25A1 WILD-TYPE" 
       TCGA-50-5049        TCGA-50-5051        TCGA-50-5055        TCGA-50-5066 
"COL25A1 WILD-TYPE" "COL25A1 WILD-TYPE" "COL25A1 WILD-TYPE" "COL25A1 WILD-TYPE" 
       TCGA-50-5068        TCGA-50-5072        TCGA-50-5930        TCGA-50-5931 
"COL25A1 WILD-TYPE" "COL25A1 WILD-TYPE" "COL25A1 WILD-TYPE" "COL25A1 WILD-TYPE" 
       TCGA-50-5932        TCGA-50-5933        TCGA-50-5935        TCGA-50-5936 
"COL25A1 WILD-TYPE" "COL25A1 WILD-TYPE" "COL25A1 WILD-TYPE" "COL25A1 WILD-TYPE" 
       TCGA-50-5939        TCGA-50-5941        TCGA-50-5942        TCGA-50-5944 
"COL25A1 WILD-TYPE" "COL25A1 WILD-TYPE" "COL25A1 WILD-TYPE" "COL25A1 WILD-TYPE" 
       TCGA-50-5946        TCGA-50-6590        TCGA-50-6591        TCGA-50-6592 
"COL25A1 WILD-TYPE" "COL25A1 WILD-TYPE" "COL25A1 WILD-TYPE" "COL25A1 WILD-TYPE" 
       TCGA-50-6593        TCGA-50-6594        TCGA-50-6595        TCGA-50-6597 
"COL25A1 WILD-TYPE" "COL25A1 WILD-TYPE" "COL25A1 WILD-TYPE" "COL25A1 WILD-TYPE" 
       TCGA-55-1592        TCGA-55-1594        TCGA-55-1595        TCGA-55-1596 
"COL25A1 WILD-TYPE" "COL25A1 WILD-TYPE" "COL25A1 WILD-TYPE" "COL25A1 WILD-TYPE" 
       TCGA-55-5899        TCGA-55-6543        TCGA-55-6642        TCGA-55-6712 
"COL25A1 WILD-TYPE" "COL25A1 WILD-TYPE" "COL25A1 WILD-TYPE" "COL25A1 WILD-TYPE" 
       TCGA-64-1676        TCGA-64-1677        TCGA-64-1678        TCGA-64-1680 
"COL25A1 WILD-TYPE" "COL25A1 WILD-TYPE" "COL25A1 WILD-TYPE" "COL25A1 WILD-TYPE" 
       TCGA-64-5774        TCGA-64-5775        TCGA-64-5778        TCGA-64-5779 
"COL25A1 WILD-TYPE" "COL25A1 WILD-TYPE" "COL25A1 WILD-TYPE" "COL25A1 WILD-TYPE" 
       TCGA-64-5781        TCGA-64-5815        TCGA-67-3770        TCGA-67-3771 
"COL25A1 WILD-TYPE" "COL25A1 WILD-TYPE" "COL25A1 WILD-TYPE" "COL25A1 WILD-TYPE" 
       TCGA-67-3772        TCGA-67-3773        TCGA-67-3774        TCGA-67-6215 
"COL25A1 WILD-TYPE" "COL25A1 WILD-TYPE" "COL25A1 WILD-TYPE" "COL25A1 WILD-TYPE" 
       TCGA-67-6216        TCGA-67-6217        TCGA-71-6725        TCGA-73-4658 
"COL25A1 WILD-TYPE" "COL25A1 WILD-TYPE" "COL25A1 WILD-TYPE" "COL25A1 WILD-TYPE" 
       TCGA-73-4659        TCGA-73-4662        TCGA-73-4666        TCGA-73-4668 
"COL25A1 WILD-TYPE" "COL25A1 WILD-TYPE" "COL25A1 WILD-TYPE" "COL25A1 WILD-TYPE" 
       TCGA-73-4670        TCGA-73-4675        TCGA-73-4676        TCGA-73-4677 
"COL25A1 WILD-TYPE" "COL25A1 WILD-TYPE" "COL25A1 WILD-TYPE" "COL25A1 WILD-TYPE" 
       TCGA-91-6828        TCGA-91-6829        TCGA-91-6831        TCGA-91-6835 
"COL25A1 WILD-TYPE" "COL25A1 WILD-TYPE" "COL25A1 WILD-TYPE" "COL25A1 WILD-TYPE" 
       TCGA-91-6836 
"COL25A1 WILD-TYPE" 
       TCGA-05-4249        TCGA-05-4250        TCGA-05-4382        TCGA-05-4384 
"COL25A1 WILD-TYPE" "COL25A1 WILD-TYPE"   "COL25A1 MUTATED" "COL25A1 WILD-TYPE" 
       TCGA-05-4390        TCGA-05-4396        TCGA-05-4397        TCGA-05-4398 
"COL25A1 WILD-TYPE"   "COL25A1 MUTATED" "COL25A1 WILD-TYPE" "COL25A1 WILD-TYPE" 
       TCGA-05-4402        TCGA-05-4405        TCGA-05-4415        TCGA-05-4417 
"COL25A1 WILD-TYPE" "COL25A1 WILD-TYPE" "COL25A1 WILD-TYPE" "COL25A1 WILD-TYPE" 
       TCGA-05-4418        TCGA-05-4420        TCGA-05-4424        TCGA-05-4426 
"COL25A1 WILD-TYPE" "COL25A1 WILD-TYPE" "COL25A1 WILD-TYPE" "COL25A1 WILD-TYPE" 
       TCGA-05-4427        TCGA-05-4430        TCGA-05-4432        TCGA-05-4433 
"COL25A1 WILD-TYPE" "COL25A1 WILD-TYPE" "COL25A1 WILD-TYPE" "COL25A1 WILD-TYPE" 
       TCGA-05-4434        TCGA-05-5420        TCGA-05-5423        TCGA-05-5425 
"COL25A1 WILD-TYPE" "COL25A1 WILD-TYPE" "COL25A1 WILD-TYPE" "COL25A1 WILD-TYPE" 
       TCGA-05-5429        TCGA-05-5715        TCGA-35-3615        TCGA-35-4122 
"COL25A1 WILD-TYPE"   "COL25A1 MUTATED" "COL25A1 WILD-TYPE" "COL25A1 WILD-TYPE" 
       TCGA-35-4123        TCGA-35-5375        TCGA-38-4625        TCGA-38-4626 
"COL25A1 WILD-TYPE" "COL25A1 WILD-TYPE" "COL25A1 WILD-TYPE" "COL25A1 WILD-TYPE" 
       TCGA-38-4627        TCGA-38-4628        TCGA-38-4629        TCGA-38-4630 
"COL25A1 WILD-TYPE" "COL25A1 WILD-TYPE" "COL25A1 WILD-TYPE" "COL25A1 WILD-TYPE" 
       TCGA-38-4631        TCGA-38-4632        TCGA-38-6178        TCGA-44-2655 
  "COL25A1 MUTATED" "COL25A1 WILD-TYPE" "COL25A1 WILD-TYPE" "COL25A1 WILD-TYPE" 
       TCGA-44-2656        TCGA-44-2657        TCGA-44-2659        TCGA-44-2661 
  "COL25A1 MUTATED" "COL25A1 WILD-TYPE" "COL25A1 WILD-TYPE" "COL25A1 WILD-TYPE" 
       TCGA-44-2662        TCGA-44-2665        TCGA-44-2666        TCGA-44-2668 
"COL25A1 WILD-TYPE"   "COL25A1 MUTATED" "COL25A1 WILD-TYPE" "COL25A1 WILD-TYPE" 
       TCGA-44-3396        TCGA-44-3398        TCGA-44-3918        TCGA-44-3919 
"COL25A1 WILD-TYPE"   "COL25A1 MUTATED" "COL25A1 WILD-TYPE" "COL25A1 WILD-TYPE" 
       TCGA-44-4112        TCGA-44-5643        TCGA-44-5645        TCGA-44-6144 
"COL25A1 WILD-TYPE" "COL25A1 WILD-TYPE" "COL25A1 WILD-TYPE" "COL25A1 WILD-TYPE" 
       TCGA-44-6145        TCGA-44-6146        TCGA-44-6147        TCGA-44-6148 
"COL25A1 WILD-TYPE" "COL25A1 WILD-TYPE" "COL25A1 WILD-TYPE" "COL25A1 WILD-TYPE" 
       TCGA-44-6774        TCGA-44-6775        TCGA-44-6776        TCGA-44-6777 
"COL25A1 WILD-TYPE" "COL25A1 WILD-TYPE" "COL25A1 WILD-TYPE" "COL25A1 WILD-TYPE" 
       TCGA-44-6778        TCGA-44-6779        TCGA-49-4486        TCGA-49-4487 
"COL25A1 WILD-TYPE" "COL25A1 WILD-TYPE" "COL25A1 WILD-TYPE" "COL25A1 WILD-TYPE" 
       TCGA-49-4488        TCGA-49-4490        TCGA-49-4494        TCGA-49-4501 
"COL25A1 WILD-TYPE" "COL25A1 WILD-TYPE" "COL25A1 WILD-TYPE" "COL25A1 WILD-TYPE" 
       TCGA-49-4505        TCGA-49-4506        TCGA-49-4507        TCGA-49-4510 
"COL25A1 WILD-TYPE" "COL25A1 WILD-TYPE" "COL25A1 WILD-TYPE"   "COL25A1 MUTATED" 
       TCGA-49-4512        TCGA-49-4514        TCGA-49-6742        TCGA-49-6743 
"COL25A1 WILD-TYPE" "COL25A1 WILD-TYPE" "COL25A1 WILD-TYPE" "COL25A1 WILD-TYPE" 
       TCGA-49-6744        TCGA-49-6745        TCGA-50-5044        TCGA-50-5045 
"COL25A1 WILD-TYPE" "COL25A1 WILD-TYPE" "COL25A1 WILD-TYPE" "COL25A1 WILD-TYPE" 
       TCGA-50-5049        TCGA-50-5051        TCGA-50-5055        TCGA-50-5066 
"COL25A1 WILD-TYPE" "COL25A1 WILD-TYPE" "COL25A1 WILD-TYPE" "COL25A1 WILD-TYPE" 
       TCGA-50-5068        TCGA-50-5072        TCGA-50-5930        TCGA-50-5931 
"COL25A1 WILD-TYPE" "COL25A1 WILD-TYPE" "COL25A1 WILD-TYPE" "COL25A1 WILD-TYPE" 
       TCGA-50-5932        TCGA-50-5933        TCGA-50-5935        TCGA-50-5936 
"COL25A1 WILD-TYPE" "COL25A1 WILD-TYPE" "COL25A1 WILD-TYPE" "COL25A1 WILD-TYPE" 
       TCGA-50-5939        TCGA-50-5941        TCGA-50-5942        TCGA-50-5944 
"COL25A1 WILD-TYPE" "COL25A1 WILD-TYPE" "COL25A1 WILD-TYPE" "COL25A1 WILD-TYPE" 
       TCGA-50-5946        TCGA-50-6590        TCGA-50-6591        TCGA-50-6592 
"COL25A1 WILD-TYPE" "COL25A1 WILD-TYPE" "COL25A1 WILD-TYPE" "COL25A1 WILD-TYPE" 
       TCGA-50-6593        TCGA-50-6594        TCGA-50-6595        TCGA-50-6597 
"COL25A1 WILD-TYPE" "COL25A1 WILD-TYPE" "COL25A1 WILD-TYPE" "COL25A1 WILD-TYPE" 
       TCGA-55-1592        TCGA-55-1594        TCGA-55-1595        TCGA-55-1596 
"COL25A1 WILD-TYPE" "COL25A1 WILD-TYPE" "COL25A1 WILD-TYPE" "COL25A1 WILD-TYPE" 
       TCGA-55-5899        TCGA-55-6543        TCGA-55-6642        TCGA-55-6712 
"COL25A1 WILD-TYPE" "COL25A1 WILD-TYPE" "COL25A1 WILD-TYPE" "COL25A1 WILD-TYPE" 
       TCGA-64-1676        TCGA-64-1677        TCGA-64-1678        TCGA-64-1680 
"COL25A1 WILD-TYPE" "COL25A1 WILD-TYPE" "COL25A1 WILD-TYPE" "COL25A1 WILD-TYPE" 
       TCGA-64-5774        TCGA-64-5775        TCGA-64-5778        TCGA-64-5779 
"COL25A1 WILD-TYPE" "COL25A1 WILD-TYPE" "COL25A1 WILD-TYPE" "COL25A1 WILD-TYPE" 
       TCGA-64-5781        TCGA-64-5815        TCGA-67-3770        TCGA-67-3771 
"COL25A1 WILD-TYPE" "COL25A1 WILD-TYPE" "COL25A1 WILD-TYPE" "COL25A1 WILD-TYPE" 
       TCGA-67-3772        TCGA-67-3773        TCGA-67-3774        TCGA-67-6215 
"COL25A1 WILD-TYPE" "COL25A1 WILD-TYPE" "COL25A1 WILD-TYPE" "COL25A1 WILD-TYPE" 
       TCGA-67-6216        TCGA-67-6217        TCGA-71-6725        TCGA-73-4658 
"COL25A1 WILD-TYPE" "COL25A1 WILD-TYPE" "COL25A1 WILD-TYPE" "COL25A1 WILD-TYPE" 
       TCGA-73-4659        TCGA-73-4662        TCGA-73-4666        TCGA-73-4668 
"COL25A1 WILD-TYPE" "COL25A1 WILD-TYPE" "COL25A1 WILD-TYPE" "COL25A1 WILD-TYPE" 
       TCGA-73-4670        TCGA-73-4675        TCGA-73-4676        TCGA-73-4677 
"COL25A1 WILD-TYPE" "COL25A1 WILD-TYPE" "COL25A1 WILD-TYPE" "COL25A1 WILD-TYPE" 
       TCGA-91-6828        TCGA-91-6829        TCGA-91-6831        TCGA-91-6835 
"COL25A1 WILD-TYPE" "COL25A1 WILD-TYPE" "COL25A1 WILD-TYPE" "COL25A1 WILD-TYPE" 
       TCGA-91-6836 
"COL25A1 WILD-TYPE" 
       TCGA-05-4249        TCGA-05-4250        TCGA-05-4382        TCGA-05-4384 
"COL25A1 WILD-TYPE" "COL25A1 WILD-TYPE"   "COL25A1 MUTATED" "COL25A1 WILD-TYPE" 
       TCGA-05-4390        TCGA-05-4396        TCGA-05-4397        TCGA-05-4398 
"COL25A1 WILD-TYPE"   "COL25A1 MUTATED" "COL25A1 WILD-TYPE" "COL25A1 WILD-TYPE" 
       TCGA-05-4402        TCGA-05-4405        TCGA-05-4415        TCGA-05-4417 
"COL25A1 WILD-TYPE" "COL25A1 WILD-TYPE" "COL25A1 WILD-TYPE" "COL25A1 WILD-TYPE" 
       TCGA-05-4418        TCGA-05-4420        TCGA-05-4424        TCGA-05-4426 
"COL25A1 WILD-TYPE" "COL25A1 WILD-TYPE" "COL25A1 WILD-TYPE" "COL25A1 WILD-TYPE" 
       TCGA-05-4427        TCGA-05-4430        TCGA-05-4432        TCGA-05-4433 
"COL25A1 WILD-TYPE" "COL25A1 WILD-TYPE" "COL25A1 WILD-TYPE" "COL25A1 WILD-TYPE" 
       TCGA-05-4434        TCGA-05-5420        TCGA-05-5423        TCGA-05-5425 
"COL25A1 WILD-TYPE" "COL25A1 WILD-TYPE" "COL25A1 WILD-TYPE" "COL25A1 WILD-TYPE" 
       TCGA-05-5429        TCGA-05-5715        TCGA-35-3615        TCGA-35-4122 
"COL25A1 WILD-TYPE"   "COL25A1 MUTATED" "COL25A1 WILD-TYPE" "COL25A1 WILD-TYPE" 
       TCGA-35-4123        TCGA-35-5375        TCGA-38-4625        TCGA-38-4626 
"COL25A1 WILD-TYPE" "COL25A1 WILD-TYPE" "COL25A1 WILD-TYPE" "COL25A1 WILD-TYPE" 
       TCGA-38-4627        TCGA-38-4628        TCGA-38-4629        TCGA-38-4630 
"COL25A1 WILD-TYPE" "COL25A1 WILD-TYPE" "COL25A1 WILD-TYPE" "COL25A1 WILD-TYPE" 
       TCGA-38-4631        TCGA-38-4632        TCGA-38-6178        TCGA-44-2655 
  "COL25A1 MUTATED" "COL25A1 WILD-TYPE" "COL25A1 WILD-TYPE" "COL25A1 WILD-TYPE" 
       TCGA-44-2656        TCGA-44-2657        TCGA-44-2659        TCGA-44-2661 
  "COL25A1 MUTATED" "COL25A1 WILD-TYPE" "COL25A1 WILD-TYPE" "COL25A1 WILD-TYPE" 
       TCGA-44-2662        TCGA-44-2665        TCGA-44-2666        TCGA-44-2668 
"COL25A1 WILD-TYPE"   "COL25A1 MUTATED" "COL25A1 WILD-TYPE" "COL25A1 WILD-TYPE" 
       TCGA-44-3396        TCGA-44-3398        TCGA-44-3918        TCGA-44-3919 
"COL25A1 WILD-TYPE"   "COL25A1 MUTATED" "COL25A1 WILD-TYPE" "COL25A1 WILD-TYPE" 
       TCGA-44-4112        TCGA-44-5643        TCGA-44-5645        TCGA-44-6144 
"COL25A1 WILD-TYPE" "COL25A1 WILD-TYPE" "COL25A1 WILD-TYPE" "COL25A1 WILD-TYPE" 
       TCGA-44-6145        TCGA-44-6146        TCGA-44-6147        TCGA-44-6148 
"COL25A1 WILD-TYPE" "COL25A1 WILD-TYPE" "COL25A1 WILD-TYPE" "COL25A1 WILD-TYPE" 
       TCGA-44-6774        TCGA-44-6775        TCGA-44-6776        TCGA-44-6777 
"COL25A1 WILD-TYPE" "COL25A1 WILD-TYPE" "COL25A1 WILD-TYPE" "COL25A1 WILD-TYPE" 
       TCGA-44-6778        TCGA-44-6779        TCGA-49-4486        TCGA-49-4487 
"COL25A1 WILD-TYPE" "COL25A1 WILD-TYPE" "COL25A1 WILD-TYPE" "COL25A1 WILD-TYPE" 
       TCGA-49-4488        TCGA-49-4490        TCGA-49-4494        TCGA-49-4501 
"COL25A1 WILD-TYPE" "COL25A1 WILD-TYPE" "COL25A1 WILD-TYPE" "COL25A1 WILD-TYPE" 
       TCGA-49-4505        TCGA-49-4506        TCGA-49-4507        TCGA-49-4510 
"COL25A1 WILD-TYPE" "COL25A1 WILD-TYPE" "COL25A1 WILD-TYPE"   "COL25A1 MUTATED" 
       TCGA-49-4512        TCGA-49-4514        TCGA-49-6742        TCGA-49-6743 
"COL25A1 WILD-TYPE" "COL25A1 WILD-TYPE" "COL25A1 WILD-TYPE" "COL25A1 WILD-TYPE" 
       TCGA-49-6744        TCGA-49-6745        TCGA-50-5044        TCGA-50-5045 
"COL25A1 WILD-TYPE" "COL25A1 WILD-TYPE" "COL25A1 WILD-TYPE" "COL25A1 WILD-TYPE" 
       TCGA-50-5049        TCGA-50-5051        TCGA-50-5055        TCGA-50-5066 
"COL25A1 WILD-TYPE" "COL25A1 WILD-TYPE" "COL25A1 WILD-TYPE" "COL25A1 WILD-TYPE" 
       TCGA-50-5068        TCGA-50-5072        TCGA-50-5930        TCGA-50-5931 
"COL25A1 WILD-TYPE" "COL25A1 WILD-TYPE" "COL25A1 WILD-TYPE" "COL25A1 WILD-TYPE" 
       TCGA-50-5932        TCGA-50-5933        TCGA-50-5935        TCGA-50-5936 
"COL25A1 WILD-TYPE" "COL25A1 WILD-TYPE" "COL25A1 WILD-TYPE" "COL25A1 WILD-TYPE" 
       TCGA-50-5939        TCGA-50-5941        TCGA-50-5942        TCGA-50-5944 
"COL25A1 WILD-TYPE" "COL25A1 WILD-TYPE" "COL25A1 WILD-TYPE" "COL25A1 WILD-TYPE" 
       TCGA-50-5946        TCGA-50-6590        TCGA-50-6591        TCGA-50-6592 
"COL25A1 WILD-TYPE" "COL25A1 WILD-TYPE" "COL25A1 WILD-TYPE" "COL25A1 WILD-TYPE" 
       TCGA-50-6593        TCGA-50-6594        TCGA-50-6595        TCGA-50-6597 
"COL25A1 WILD-TYPE" "COL25A1 WILD-TYPE" "COL25A1 WILD-TYPE" "COL25A1 WILD-TYPE" 
       TCGA-55-1592        TCGA-55-1594        TCGA-55-1595        TCGA-55-1596 
"COL25A1 WILD-TYPE" "COL25A1 WILD-TYPE" "COL25A1 WILD-TYPE" "COL25A1 WILD-TYPE" 
       TCGA-55-5899        TCGA-55-6543        TCGA-55-6642        TCGA-55-6712 
"COL25A1 WILD-TYPE" "COL25A1 WILD-TYPE" "COL25A1 WILD-TYPE" "COL25A1 WILD-TYPE" 
       TCGA-64-1676        TCGA-64-1677        TCGA-64-1678        TCGA-64-1680 
"COL25A1 WILD-TYPE" "COL25A1 WILD-TYPE" "COL25A1 WILD-TYPE" "COL25A1 WILD-TYPE" 
       TCGA-64-5774        TCGA-64-5775        TCGA-64-5778        TCGA-64-5779 
"COL25A1 WILD-TYPE" "COL25A1 WILD-TYPE" "COL25A1 WILD-TYPE" "COL25A1 WILD-TYPE" 
       TCGA-64-5781        TCGA-64-5815        TCGA-67-3770        TCGA-67-3771 
"COL25A1 WILD-TYPE" "COL25A1 WILD-TYPE" "COL25A1 WILD-TYPE" "COL25A1 WILD-TYPE" 
       TCGA-67-3772        TCGA-67-3773        TCGA-67-3774        TCGA-67-6215 
"COL25A1 WILD-TYPE" "COL25A1 WILD-TYPE" "COL25A1 WILD-TYPE" "COL25A1 WILD-TYPE" 
       TCGA-67-6216        TCGA-67-6217        TCGA-71-6725        TCGA-73-4658 
"COL25A1 WILD-TYPE" "COL25A1 WILD-TYPE" "COL25A1 WILD-TYPE" "COL25A1 WILD-TYPE" 
       TCGA-73-4659        TCGA-73-4662        TCGA-73-4666        TCGA-73-4668 
"COL25A1 WILD-TYPE" "COL25A1 WILD-TYPE" "COL25A1 WILD-TYPE" "COL25A1 WILD-TYPE" 
       TCGA-73-4670        TCGA-73-4675        TCGA-73-4676        TCGA-73-4677 
"COL25A1 WILD-TYPE" "COL25A1 WILD-TYPE" "COL25A1 WILD-TYPE" "COL25A1 WILD-TYPE" 
       TCGA-91-6828        TCGA-91-6829        TCGA-91-6831        TCGA-91-6835 
"COL25A1 WILD-TYPE" "COL25A1 WILD-TYPE" "COL25A1 WILD-TYPE" "COL25A1 WILD-TYPE" 
       TCGA-91-6836 
"COL25A1 WILD-TYPE" 
[1] "hr=" "2.1"
D197V2, continuous
D197V3, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  COL25A1 MUTATED      6    5
  COL25A1 WILD-TYPE   87   74
        clus
vv       COL25A1 MUTATED COL25A1 WILD-TYPE
  FEMALE               6                87
  MALE                 5                74
D197V4, continuous
D197V5, multiclass
D197V6, multiclass
    clus
vv   COL25A1 MUTATED COL25A1 WILD-TYPE
  T1               1                40
  T2               8               100
  T3               1                13
  T4               1                 7
D197V7, multiclass
       clus
vv      COL25A1 MUTATED COL25A1 WILD-TYPE
  N0                  7                88
  N1                  3                34
  N2+N3               1                34
D197V8, multiclass
    clus
vv   COL25A1 MUTATED COL25A1 WILD-TYPE
  M0              11               126
  M1               0                 9
  MX               0                22
D197V9, multiclass
     clus
vv    COL25A1 MUTATED COL25A1 WILD-TYPE
  I                 7                81
  II                2                31
  III               2                37
  IV                0                 9
D197V10, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  COL25A1 MUTATED      0   11
  COL25A1 WILD-TYPE   16  145
     clus
vv    COL25A1 MUTATED COL25A1 WILD-TYPE
  NO                0                16
  YES              11               145
D197V11, continuous
D197V12, continuous
D197V13, multiclass
                                             clus
vv                                            COL25A1 MUTATED COL25A1 WILD-TYPE
  CURRENT REFORMED SMOKER FOR < OR = 15 YEARS               7                55
  CURRENT REFORMED SMOKER FOR > 15 YEARS                    1                45
  CURRENT SMOKER                                            1                27
  LIFELONG NON-SMOKER                                       2                22
D197V14, continuous

Clustering(198) Variable = SGIP1 MUTATION ANALYSIS
D198V1, survival
                 sevent
clus2              0  1
  SGIP1 MUTATED    8  1
  SGIP1 WILD-TYPE 91 49
  SGIP1 MUTATED SGIP1 WILD-TYPE 
              9             140 
  SGIP1 MUTATED SGIP1 WILD-TYPE 
              1              49 
$`SGIP1 MUTATED`
TCGA-05-4396 TCGA-05-4398 TCGA-05-5423 TCGA-44-3918 TCGA-44-4112 TCGA-55-5899 
        9.96        47.05         4.96         6.44         4.60         2.86 
TCGA-64-1676 TCGA-64-5778 TCGA-91-6836 
       56.81        30.44         0.36 

$`SGIP1 WILD-TYPE`
TCGA-05-4249 TCGA-05-4250 TCGA-05-4382 TCGA-05-4384 TCGA-05-4390 TCGA-05-4397 
       38.07         3.98        19.92        14.01        37.02        24.03 
TCGA-05-4402 TCGA-05-4405 TCGA-05-4415 TCGA-05-4417 TCGA-05-4418 TCGA-05-4420 
        8.02        20.05         2.96        14.93         8.98        29.95 
TCGA-05-4424 TCGA-05-4426 TCGA-05-4427 TCGA-05-4430 TCGA-05-4432 TCGA-05-4433 
       30.02        26.01        26.01        25.02        25.02        24.00 
TCGA-05-4434 TCGA-05-5420 TCGA-05-5425 TCGA-05-5429 TCGA-05-5715 TCGA-35-3615 
       15.02         1.02         2.96         0.99         2.04         0.46 
TCGA-35-4122 TCGA-35-4123 TCGA-35-5375 TCGA-38-4625 TCGA-38-4626 TCGA-38-4627 
        7.36         5.95         8.68        47.61        85.32        37.71 
TCGA-38-4628 TCGA-38-4629 TCGA-38-4630 TCGA-38-4631 TCGA-38-4632 TCGA-38-6178 
       49.02        28.37        35.28        11.64        44.61         5.19 
TCGA-44-2655 TCGA-44-2656 TCGA-44-2657 TCGA-44-2659 TCGA-44-2661 TCGA-44-2662 
       18.87        19.10        13.15        17.39         3.39        15.78 
TCGA-44-2665 TCGA-44-2666 TCGA-44-2668 TCGA-44-3396 TCGA-44-3398 TCGA-44-3919 
       13.15         3.19         8.09        10.22         8.32         6.21 
TCGA-44-5643 TCGA-44-5645 TCGA-44-6144 TCGA-44-6145 TCGA-44-6146 TCGA-44-6147 
        3.48         6.84         0.30         3.35         9.93         7.76 
TCGA-44-6148 TCGA-44-6774 TCGA-44-6775 TCGA-44-6776 TCGA-44-6777 TCGA-44-6778 
        3.12         5.42         2.70        63.72        32.45        36.49 
TCGA-44-6779 TCGA-49-4486 TCGA-49-4487 TCGA-49-4488 TCGA-49-4490 TCGA-49-4494 
       16.41        76.21        28.11        28.57        12.66        35.54 
TCGA-49-4501 TCGA-49-4505 TCGA-49-4506 TCGA-49-4507 TCGA-49-4510 TCGA-49-4512 
       46.72        14.07        32.84         8.81        29.46        29.75 
TCGA-49-4514 TCGA-49-6742 TCGA-49-6743 TCGA-49-6744 TCGA-49-6745 TCGA-50-5044 
       43.20        15.02        12.13        12.99         4.93        20.48 
TCGA-50-5045 TCGA-50-5049 TCGA-50-5051 TCGA-50-5055 TCGA-50-5066 TCGA-50-5068 
       71.47        48.82        14.96        25.81         9.76        49.28 
TCGA-50-5072 TCGA-50-5930 TCGA-50-5931 TCGA-50-5932 TCGA-50-5933 TCGA-50-5935 
        8.05         9.27         8.78        35.87        77.88        21.47 
TCGA-50-5936 TCGA-50-5939 TCGA-50-5941 TCGA-50-5942 TCGA-50-5944 TCGA-50-5946 
        8.45        15.12         9.37         4.44        12.26        11.47 
TCGA-50-6590 TCGA-50-6591 TCGA-50-6592 TCGA-50-6593 TCGA-50-6594 TCGA-50-6595 
       42.31         3.88        25.51        11.05        12.16         6.21 
TCGA-50-6597 TCGA-55-1592 TCGA-55-1594 TCGA-55-1595 TCGA-55-1596 TCGA-55-6543 
       33.37        23.05        38.73        48.62        45.17         0.07 
TCGA-55-6642 TCGA-55-6712 TCGA-64-1677 TCGA-64-1678 TCGA-64-1680 TCGA-64-5774 
       32.61         0.79        20.65        39.09        37.02        83.84 
TCGA-64-5775 TCGA-64-5779 TCGA-64-5781 TCGA-64-5815 TCGA-67-3770 TCGA-67-3771 
        0.10        16.67        39.52         7.33         0.99         1.97 
TCGA-67-3772 TCGA-67-3773 TCGA-67-3774 TCGA-67-6215 TCGA-67-6216 TCGA-67-6217 
        0.59         2.04         0.59         0.89         0.69        13.87 
TCGA-71-6725 TCGA-73-4658 TCGA-73-4659 TCGA-73-4662 TCGA-73-4666 TCGA-73-4668 
        2.01        52.57        23.38        29.95        20.28        15.35 
TCGA-73-4670 TCGA-73-4675 TCGA-73-4676 TCGA-73-4677 TCGA-91-6828 TCGA-91-6829 
        0.46         1.32         4.01         1.25         1.22        41.33 
TCGA-91-6831 TCGA-91-6835 
        1.28         1.15 

  SGIP1 MUTATED SGIP1 WILD-TYPE 
           0.36            0.07 
  SGIP1 MUTATED SGIP1 WILD-TYPE 
          56.81           85.32 
  SGIP1 MUTATED SGIP1 WILD-TYPE 
           6.44           14.04 
[1] "0.4 - 56.8 (6.4)"  "0.1 - 85.3 (14.0)"
     TCGA-05-4249      TCGA-05-4250      TCGA-05-4382      TCGA-05-4384 
"SGIP1 WILD-TYPE" "SGIP1 WILD-TYPE" "SGIP1 WILD-TYPE" "SGIP1 WILD-TYPE" 
     TCGA-05-4390      TCGA-05-4396      TCGA-05-4397      TCGA-05-4398 
"SGIP1 WILD-TYPE"   "SGIP1 MUTATED" "SGIP1 WILD-TYPE"   "SGIP1 MUTATED" 
     TCGA-05-4402      TCGA-05-4405      TCGA-05-4415      TCGA-05-4417 
"SGIP1 WILD-TYPE" "SGIP1 WILD-TYPE" "SGIP1 WILD-TYPE" "SGIP1 WILD-TYPE" 
     TCGA-05-4418      TCGA-05-4420      TCGA-05-4424      TCGA-05-4426 
"SGIP1 WILD-TYPE" "SGIP1 WILD-TYPE" "SGIP1 WILD-TYPE" "SGIP1 WILD-TYPE" 
     TCGA-05-4427      TCGA-05-4430      TCGA-05-4432      TCGA-05-4433 
"SGIP1 WILD-TYPE" "SGIP1 WILD-TYPE" "SGIP1 WILD-TYPE" "SGIP1 WILD-TYPE" 
     TCGA-05-4434      TCGA-05-5420      TCGA-05-5423      TCGA-05-5425 
"SGIP1 WILD-TYPE" "SGIP1 WILD-TYPE"   "SGIP1 MUTATED" "SGIP1 WILD-TYPE" 
     TCGA-05-5429      TCGA-05-5715      TCGA-35-3615      TCGA-35-4122 
"SGIP1 WILD-TYPE" "SGIP1 WILD-TYPE" "SGIP1 WILD-TYPE" "SGIP1 WILD-TYPE" 
     TCGA-35-4123      TCGA-35-5375      TCGA-38-4625      TCGA-38-4626 
"SGIP1 WILD-TYPE" "SGIP1 WILD-TYPE" "SGIP1 WILD-TYPE" "SGIP1 WILD-TYPE" 
     TCGA-38-4627      TCGA-38-4628      TCGA-38-4629      TCGA-38-4630 
"SGIP1 WILD-TYPE" "SGIP1 WILD-TYPE" "SGIP1 WILD-TYPE" "SGIP1 WILD-TYPE" 
     TCGA-38-4631      TCGA-38-4632      TCGA-38-6178      TCGA-44-2655 
"SGIP1 WILD-TYPE" "SGIP1 WILD-TYPE" "SGIP1 WILD-TYPE" "SGIP1 WILD-TYPE" 
     TCGA-44-2656      TCGA-44-2657      TCGA-44-2659      TCGA-44-2661 
"SGIP1 WILD-TYPE" "SGIP1 WILD-TYPE" "SGIP1 WILD-TYPE" "SGIP1 WILD-TYPE" 
     TCGA-44-2662      TCGA-44-2665      TCGA-44-2666      TCGA-44-2668 
"SGIP1 WILD-TYPE" "SGIP1 WILD-TYPE" "SGIP1 WILD-TYPE" "SGIP1 WILD-TYPE" 
     TCGA-44-3396      TCGA-44-3398      TCGA-44-3918      TCGA-44-3919 
"SGIP1 WILD-TYPE" "SGIP1 WILD-TYPE"   "SGIP1 MUTATED" "SGIP1 WILD-TYPE" 
     TCGA-44-4112      TCGA-44-5643      TCGA-44-5645      TCGA-44-6144 
  "SGIP1 MUTATED" "SGIP1 WILD-TYPE" "SGIP1 WILD-TYPE" "SGIP1 WILD-TYPE" 
     TCGA-44-6145      TCGA-44-6146      TCGA-44-6147      TCGA-44-6148 
"SGIP1 WILD-TYPE" "SGIP1 WILD-TYPE" "SGIP1 WILD-TYPE" "SGIP1 WILD-TYPE" 
     TCGA-44-6774      TCGA-44-6775      TCGA-44-6776      TCGA-44-6777 
"SGIP1 WILD-TYPE" "SGIP1 WILD-TYPE" "SGIP1 WILD-TYPE" "SGIP1 WILD-TYPE" 
     TCGA-44-6778      TCGA-44-6779      TCGA-49-4486      TCGA-49-4487 
"SGIP1 WILD-TYPE" "SGIP1 WILD-TYPE" "SGIP1 WILD-TYPE" "SGIP1 WILD-TYPE" 
     TCGA-49-4488      TCGA-49-4490      TCGA-49-4494      TCGA-49-4501 
"SGIP1 WILD-TYPE" "SGIP1 WILD-TYPE" "SGIP1 WILD-TYPE" "SGIP1 WILD-TYPE" 
     TCGA-49-4505      TCGA-49-4506      TCGA-49-4507      TCGA-49-4510 
"SGIP1 WILD-TYPE" "SGIP1 WILD-TYPE" "SGIP1 WILD-TYPE" "SGIP1 WILD-TYPE" 
     TCGA-49-4512      TCGA-49-4514      TCGA-49-6742      TCGA-49-6743 
"SGIP1 WILD-TYPE" "SGIP1 WILD-TYPE" "SGIP1 WILD-TYPE" "SGIP1 WILD-TYPE" 
     TCGA-49-6744      TCGA-49-6745      TCGA-50-5044      TCGA-50-5045 
"SGIP1 WILD-TYPE" "SGIP1 WILD-TYPE" "SGIP1 WILD-TYPE" "SGIP1 WILD-TYPE" 
     TCGA-50-5049      TCGA-50-5051      TCGA-50-5055      TCGA-50-5066 
"SGIP1 WILD-TYPE" "SGIP1 WILD-TYPE" "SGIP1 WILD-TYPE" "SGIP1 WILD-TYPE" 
     TCGA-50-5068      TCGA-50-5072      TCGA-50-5930      TCGA-50-5931 
"SGIP1 WILD-TYPE" "SGIP1 WILD-TYPE" "SGIP1 WILD-TYPE" "SGIP1 WILD-TYPE" 
     TCGA-50-5932      TCGA-50-5933      TCGA-50-5935      TCGA-50-5936 
"SGIP1 WILD-TYPE" "SGIP1 WILD-TYPE" "SGIP1 WILD-TYPE" "SGIP1 WILD-TYPE" 
     TCGA-50-5939      TCGA-50-5941      TCGA-50-5942      TCGA-50-5944 
"SGIP1 WILD-TYPE" "SGIP1 WILD-TYPE" "SGIP1 WILD-TYPE" "SGIP1 WILD-TYPE" 
     TCGA-50-5946      TCGA-50-6590      TCGA-50-6591      TCGA-50-6592 
"SGIP1 WILD-TYPE" "SGIP1 WILD-TYPE" "SGIP1 WILD-TYPE" "SGIP1 WILD-TYPE" 
     TCGA-50-6593      TCGA-50-6594      TCGA-50-6595      TCGA-50-6597 
"SGIP1 WILD-TYPE" "SGIP1 WILD-TYPE" "SGIP1 WILD-TYPE" "SGIP1 WILD-TYPE" 
     TCGA-55-1592      TCGA-55-1594      TCGA-55-1595      TCGA-55-1596 
"SGIP1 WILD-TYPE" "SGIP1 WILD-TYPE" "SGIP1 WILD-TYPE" "SGIP1 WILD-TYPE" 
     TCGA-55-5899      TCGA-55-6543      TCGA-55-6642      TCGA-55-6712 
  "SGIP1 MUTATED" "SGIP1 WILD-TYPE" "SGIP1 WILD-TYPE" "SGIP1 WILD-TYPE" 
     TCGA-64-1676      TCGA-64-1677      TCGA-64-1678      TCGA-64-1680 
  "SGIP1 MUTATED" "SGIP1 WILD-TYPE" "SGIP1 WILD-TYPE" "SGIP1 WILD-TYPE" 
     TCGA-64-5774      TCGA-64-5775      TCGA-64-5778      TCGA-64-5779 
"SGIP1 WILD-TYPE" "SGIP1 WILD-TYPE"   "SGIP1 MUTATED" "SGIP1 WILD-TYPE" 
     TCGA-64-5781      TCGA-64-5815      TCGA-67-3770      TCGA-67-3771 
"SGIP1 WILD-TYPE" "SGIP1 WILD-TYPE" "SGIP1 WILD-TYPE" "SGIP1 WILD-TYPE" 
     TCGA-67-3772      TCGA-67-3773      TCGA-67-3774      TCGA-67-6215 
"SGIP1 WILD-TYPE" "SGIP1 WILD-TYPE" "SGIP1 WILD-TYPE" "SGIP1 WILD-TYPE" 
     TCGA-67-6216      TCGA-67-6217      TCGA-71-6725      TCGA-73-4658 
"SGIP1 WILD-TYPE" "SGIP1 WILD-TYPE" "SGIP1 WILD-TYPE" "SGIP1 WILD-TYPE" 
     TCGA-73-4659      TCGA-73-4662      TCGA-73-4666      TCGA-73-4668 
"SGIP1 WILD-TYPE" "SGIP1 WILD-TYPE" "SGIP1 WILD-TYPE" "SGIP1 WILD-TYPE" 
     TCGA-73-4670      TCGA-73-4675      TCGA-73-4676      TCGA-73-4677 
"SGIP1 WILD-TYPE" "SGIP1 WILD-TYPE" "SGIP1 WILD-TYPE" "SGIP1 WILD-TYPE" 
     TCGA-91-6828      TCGA-91-6829      TCGA-91-6831      TCGA-91-6835 
"SGIP1 WILD-TYPE" "SGIP1 WILD-TYPE" "SGIP1 WILD-TYPE" "SGIP1 WILD-TYPE" 
     TCGA-91-6836 
  "SGIP1 MUTATED" 
     TCGA-05-4249      TCGA-05-4250      TCGA-05-4382      TCGA-05-4384 
"SGIP1 WILD-TYPE" "SGIP1 WILD-TYPE" "SGIP1 WILD-TYPE" "SGIP1 WILD-TYPE" 
     TCGA-05-4390      TCGA-05-4396      TCGA-05-4397      TCGA-05-4398 
"SGIP1 WILD-TYPE"   "SGIP1 MUTATED" "SGIP1 WILD-TYPE"   "SGIP1 MUTATED" 
     TCGA-05-4402      TCGA-05-4405      TCGA-05-4415      TCGA-05-4417 
"SGIP1 WILD-TYPE" "SGIP1 WILD-TYPE" "SGIP1 WILD-TYPE" "SGIP1 WILD-TYPE" 
     TCGA-05-4418      TCGA-05-4420      TCGA-05-4424      TCGA-05-4426 
"SGIP1 WILD-TYPE" "SGIP1 WILD-TYPE" "SGIP1 WILD-TYPE" "SGIP1 WILD-TYPE" 
     TCGA-05-4427      TCGA-05-4430      TCGA-05-4432      TCGA-05-4433 
"SGIP1 WILD-TYPE" "SGIP1 WILD-TYPE" "SGIP1 WILD-TYPE" "SGIP1 WILD-TYPE" 
     TCGA-05-4434      TCGA-05-5420      TCGA-05-5423      TCGA-05-5425 
"SGIP1 WILD-TYPE" "SGIP1 WILD-TYPE"   "SGIP1 MUTATED" "SGIP1 WILD-TYPE" 
     TCGA-05-5429      TCGA-05-5715      TCGA-35-3615      TCGA-35-4122 
"SGIP1 WILD-TYPE" "SGIP1 WILD-TYPE" "SGIP1 WILD-TYPE" "SGIP1 WILD-TYPE" 
     TCGA-35-4123      TCGA-35-5375      TCGA-38-4625      TCGA-38-4626 
"SGIP1 WILD-TYPE" "SGIP1 WILD-TYPE" "SGIP1 WILD-TYPE" "SGIP1 WILD-TYPE" 
     TCGA-38-4627      TCGA-38-4628      TCGA-38-4629      TCGA-38-4630 
"SGIP1 WILD-TYPE" "SGIP1 WILD-TYPE" "SGIP1 WILD-TYPE" "SGIP1 WILD-TYPE" 
     TCGA-38-4631      TCGA-38-4632      TCGA-38-6178      TCGA-44-2655 
"SGIP1 WILD-TYPE" "SGIP1 WILD-TYPE" "SGIP1 WILD-TYPE" "SGIP1 WILD-TYPE" 
     TCGA-44-2656      TCGA-44-2657      TCGA-44-2659      TCGA-44-2661 
"SGIP1 WILD-TYPE" "SGIP1 WILD-TYPE" "SGIP1 WILD-TYPE" "SGIP1 WILD-TYPE" 
     TCGA-44-2662      TCGA-44-2665      TCGA-44-2666      TCGA-44-2668 
"SGIP1 WILD-TYPE" "SGIP1 WILD-TYPE" "SGIP1 WILD-TYPE" "SGIP1 WILD-TYPE" 
     TCGA-44-3396      TCGA-44-3398      TCGA-44-3918      TCGA-44-3919 
"SGIP1 WILD-TYPE" "SGIP1 WILD-TYPE"   "SGIP1 MUTATED" "SGIP1 WILD-TYPE" 
     TCGA-44-4112      TCGA-44-5643      TCGA-44-5645      TCGA-44-6144 
  "SGIP1 MUTATED" "SGIP1 WILD-TYPE" "SGIP1 WILD-TYPE" "SGIP1 WILD-TYPE" 
     TCGA-44-6145      TCGA-44-6146      TCGA-44-6147      TCGA-44-6148 
"SGIP1 WILD-TYPE" "SGIP1 WILD-TYPE" "SGIP1 WILD-TYPE" "SGIP1 WILD-TYPE" 
     TCGA-44-6774      TCGA-44-6775      TCGA-44-6776      TCGA-44-6777 
"SGIP1 WILD-TYPE" "SGIP1 WILD-TYPE" "SGIP1 WILD-TYPE" "SGIP1 WILD-TYPE" 
     TCGA-44-6778      TCGA-44-6779      TCGA-49-4486      TCGA-49-4487 
"SGIP1 WILD-TYPE" "SGIP1 WILD-TYPE" "SGIP1 WILD-TYPE" "SGIP1 WILD-TYPE" 
     TCGA-49-4488      TCGA-49-4490      TCGA-49-4494      TCGA-49-4501 
"SGIP1 WILD-TYPE" "SGIP1 WILD-TYPE" "SGIP1 WILD-TYPE" "SGIP1 WILD-TYPE" 
     TCGA-49-4505      TCGA-49-4506      TCGA-49-4507      TCGA-49-4510 
"SGIP1 WILD-TYPE" "SGIP1 WILD-TYPE" "SGIP1 WILD-TYPE" "SGIP1 WILD-TYPE" 
     TCGA-49-4512      TCGA-49-4514      TCGA-49-6742      TCGA-49-6743 
"SGIP1 WILD-TYPE" "SGIP1 WILD-TYPE" "SGIP1 WILD-TYPE" "SGIP1 WILD-TYPE" 
     TCGA-49-6744      TCGA-49-6745      TCGA-50-5044      TCGA-50-5045 
"SGIP1 WILD-TYPE" "SGIP1 WILD-TYPE" "SGIP1 WILD-TYPE" "SGIP1 WILD-TYPE" 
     TCGA-50-5049      TCGA-50-5051      TCGA-50-5055      TCGA-50-5066 
"SGIP1 WILD-TYPE" "SGIP1 WILD-TYPE" "SGIP1 WILD-TYPE" "SGIP1 WILD-TYPE" 
     TCGA-50-5068      TCGA-50-5072      TCGA-50-5930      TCGA-50-5931 
"SGIP1 WILD-TYPE" "SGIP1 WILD-TYPE" "SGIP1 WILD-TYPE" "SGIP1 WILD-TYPE" 
     TCGA-50-5932      TCGA-50-5933      TCGA-50-5935      TCGA-50-5936 
"SGIP1 WILD-TYPE" "SGIP1 WILD-TYPE" "SGIP1 WILD-TYPE" "SGIP1 WILD-TYPE" 
     TCGA-50-5939      TCGA-50-5941      TCGA-50-5942      TCGA-50-5944 
"SGIP1 WILD-TYPE" "SGIP1 WILD-TYPE" "SGIP1 WILD-TYPE" "SGIP1 WILD-TYPE" 
     TCGA-50-5946      TCGA-50-6590      TCGA-50-6591      TCGA-50-6592 
"SGIP1 WILD-TYPE" "SGIP1 WILD-TYPE" "SGIP1 WILD-TYPE" "SGIP1 WILD-TYPE" 
     TCGA-50-6593      TCGA-50-6594      TCGA-50-6595      TCGA-50-6597 
"SGIP1 WILD-TYPE" "SGIP1 WILD-TYPE" "SGIP1 WILD-TYPE" "SGIP1 WILD-TYPE" 
     TCGA-55-1592      TCGA-55-1594      TCGA-55-1595      TCGA-55-1596 
"SGIP1 WILD-TYPE" "SGIP1 WILD-TYPE" "SGIP1 WILD-TYPE" "SGIP1 WILD-TYPE" 
     TCGA-55-5899      TCGA-55-6543      TCGA-55-6642      TCGA-55-6712 
  "SGIP1 MUTATED" "SGIP1 WILD-TYPE" "SGIP1 WILD-TYPE" "SGIP1 WILD-TYPE" 
     TCGA-64-1676      TCGA-64-1677      TCGA-64-1678      TCGA-64-1680 
  "SGIP1 MUTATED" "SGIP1 WILD-TYPE" "SGIP1 WILD-TYPE" "SGIP1 WILD-TYPE" 
     TCGA-64-5774      TCGA-64-5775      TCGA-64-5778      TCGA-64-5779 
"SGIP1 WILD-TYPE" "SGIP1 WILD-TYPE"   "SGIP1 MUTATED" "SGIP1 WILD-TYPE" 
     TCGA-64-5781      TCGA-64-5815      TCGA-67-3770      TCGA-67-3771 
"SGIP1 WILD-TYPE" "SGIP1 WILD-TYPE" "SGIP1 WILD-TYPE" "SGIP1 WILD-TYPE" 
     TCGA-67-3772      TCGA-67-3773      TCGA-67-3774      TCGA-67-6215 
"SGIP1 WILD-TYPE" "SGIP1 WILD-TYPE" "SGIP1 WILD-TYPE" "SGIP1 WILD-TYPE" 
     TCGA-67-6216      TCGA-67-6217      TCGA-71-6725      TCGA-73-4658 
"SGIP1 WILD-TYPE" "SGIP1 WILD-TYPE" "SGIP1 WILD-TYPE" "SGIP1 WILD-TYPE" 
     TCGA-73-4659      TCGA-73-4662      TCGA-73-4666      TCGA-73-4668 
"SGIP1 WILD-TYPE" "SGIP1 WILD-TYPE" "SGIP1 WILD-TYPE" "SGIP1 WILD-TYPE" 
     TCGA-73-4670      TCGA-73-4675      TCGA-73-4676      TCGA-73-4677 
"SGIP1 WILD-TYPE" "SGIP1 WILD-TYPE" "SGIP1 WILD-TYPE" "SGIP1 WILD-TYPE" 
     TCGA-91-6828      TCGA-91-6829      TCGA-91-6831      TCGA-91-6835 
"SGIP1 WILD-TYPE" "SGIP1 WILD-TYPE" "SGIP1 WILD-TYPE" "SGIP1 WILD-TYPE" 
     TCGA-91-6836 
  "SGIP1 MUTATED" 
     TCGA-05-4249      TCGA-05-4250      TCGA-05-4382      TCGA-05-4384 
"SGIP1 WILD-TYPE" "SGIP1 WILD-TYPE" "SGIP1 WILD-TYPE" "SGIP1 WILD-TYPE" 
     TCGA-05-4390      TCGA-05-4396      TCGA-05-4397      TCGA-05-4398 
"SGIP1 WILD-TYPE"   "SGIP1 MUTATED" "SGIP1 WILD-TYPE"   "SGIP1 MUTATED" 
     TCGA-05-4402      TCGA-05-4405      TCGA-05-4415      TCGA-05-4417 
"SGIP1 WILD-TYPE" "SGIP1 WILD-TYPE" "SGIP1 WILD-TYPE" "SGIP1 WILD-TYPE" 
     TCGA-05-4418      TCGA-05-4420      TCGA-05-4424      TCGA-05-4426 
"SGIP1 WILD-TYPE" "SGIP1 WILD-TYPE" "SGIP1 WILD-TYPE" "SGIP1 WILD-TYPE" 
     TCGA-05-4427      TCGA-05-4430      TCGA-05-4432      TCGA-05-4433 
"SGIP1 WILD-TYPE" "SGIP1 WILD-TYPE" "SGIP1 WILD-TYPE" "SGIP1 WILD-TYPE" 
     TCGA-05-4434      TCGA-05-5420      TCGA-05-5423      TCGA-05-5425 
"SGIP1 WILD-TYPE" "SGIP1 WILD-TYPE"   "SGIP1 MUTATED" "SGIP1 WILD-TYPE" 
     TCGA-05-5429      TCGA-05-5715      TCGA-35-3615      TCGA-35-4122 
"SGIP1 WILD-TYPE" "SGIP1 WILD-TYPE" "SGIP1 WILD-TYPE" "SGIP1 WILD-TYPE" 
     TCGA-35-4123      TCGA-35-5375      TCGA-38-4625      TCGA-38-4626 
"SGIP1 WILD-TYPE" "SGIP1 WILD-TYPE" "SGIP1 WILD-TYPE" "SGIP1 WILD-TYPE" 
     TCGA-38-4627      TCGA-38-4628      TCGA-38-4629      TCGA-38-4630 
"SGIP1 WILD-TYPE" "SGIP1 WILD-TYPE" "SGIP1 WILD-TYPE" "SGIP1 WILD-TYPE" 
     TCGA-38-4631      TCGA-38-4632      TCGA-38-6178      TCGA-44-2655 
"SGIP1 WILD-TYPE" "SGIP1 WILD-TYPE" "SGIP1 WILD-TYPE" "SGIP1 WILD-TYPE" 
     TCGA-44-2656      TCGA-44-2657      TCGA-44-2659      TCGA-44-2661 
"SGIP1 WILD-TYPE" "SGIP1 WILD-TYPE" "SGIP1 WILD-TYPE" "SGIP1 WILD-TYPE" 
     TCGA-44-2662      TCGA-44-2665      TCGA-44-2666      TCGA-44-2668 
"SGIP1 WILD-TYPE" "SGIP1 WILD-TYPE" "SGIP1 WILD-TYPE" "SGIP1 WILD-TYPE" 
     TCGA-44-3396      TCGA-44-3398      TCGA-44-3918      TCGA-44-3919 
"SGIP1 WILD-TYPE" "SGIP1 WILD-TYPE"   "SGIP1 MUTATED" "SGIP1 WILD-TYPE" 
     TCGA-44-4112      TCGA-44-5643      TCGA-44-5645      TCGA-44-6144 
  "SGIP1 MUTATED" "SGIP1 WILD-TYPE" "SGIP1 WILD-TYPE" "SGIP1 WILD-TYPE" 
     TCGA-44-6145      TCGA-44-6146      TCGA-44-6147      TCGA-44-6148 
"SGIP1 WILD-TYPE" "SGIP1 WILD-TYPE" "SGIP1 WILD-TYPE" "SGIP1 WILD-TYPE" 
     TCGA-44-6774      TCGA-44-6775      TCGA-44-6776      TCGA-44-6777 
"SGIP1 WILD-TYPE" "SGIP1 WILD-TYPE" "SGIP1 WILD-TYPE" "SGIP1 WILD-TYPE" 
     TCGA-44-6778      TCGA-44-6779      TCGA-49-4486      TCGA-49-4487 
"SGIP1 WILD-TYPE" "SGIP1 WILD-TYPE" "SGIP1 WILD-TYPE" "SGIP1 WILD-TYPE" 
     TCGA-49-4488      TCGA-49-4490      TCGA-49-4494      TCGA-49-4501 
"SGIP1 WILD-TYPE" "SGIP1 WILD-TYPE" "SGIP1 WILD-TYPE" "SGIP1 WILD-TYPE" 
     TCGA-49-4505      TCGA-49-4506      TCGA-49-4507      TCGA-49-4510 
"SGIP1 WILD-TYPE" "SGIP1 WILD-TYPE" "SGIP1 WILD-TYPE" "SGIP1 WILD-TYPE" 
     TCGA-49-4512      TCGA-49-4514      TCGA-49-6742      TCGA-49-6743 
"SGIP1 WILD-TYPE" "SGIP1 WILD-TYPE" "SGIP1 WILD-TYPE" "SGIP1 WILD-TYPE" 
     TCGA-49-6744      TCGA-49-6745      TCGA-50-5044      TCGA-50-5045 
"SGIP1 WILD-TYPE" "SGIP1 WILD-TYPE" "SGIP1 WILD-TYPE" "SGIP1 WILD-TYPE" 
     TCGA-50-5049      TCGA-50-5051      TCGA-50-5055      TCGA-50-5066 
"SGIP1 WILD-TYPE" "SGIP1 WILD-TYPE" "SGIP1 WILD-TYPE" "SGIP1 WILD-TYPE" 
     TCGA-50-5068      TCGA-50-5072      TCGA-50-5930      TCGA-50-5931 
"SGIP1 WILD-TYPE" "SGIP1 WILD-TYPE" "SGIP1 WILD-TYPE" "SGIP1 WILD-TYPE" 
     TCGA-50-5932      TCGA-50-5933      TCGA-50-5935      TCGA-50-5936 
"SGIP1 WILD-TYPE" "SGIP1 WILD-TYPE" "SGIP1 WILD-TYPE" "SGIP1 WILD-TYPE" 
     TCGA-50-5939      TCGA-50-5941      TCGA-50-5942      TCGA-50-5944 
"SGIP1 WILD-TYPE" "SGIP1 WILD-TYPE" "SGIP1 WILD-TYPE" "SGIP1 WILD-TYPE" 
     TCGA-50-5946      TCGA-50-6590      TCGA-50-6591      TCGA-50-6592 
"SGIP1 WILD-TYPE" "SGIP1 WILD-TYPE" "SGIP1 WILD-TYPE" "SGIP1 WILD-TYPE" 
     TCGA-50-6593      TCGA-50-6594      TCGA-50-6595      TCGA-50-6597 
"SGIP1 WILD-TYPE" "SGIP1 WILD-TYPE" "SGIP1 WILD-TYPE" "SGIP1 WILD-TYPE" 
     TCGA-55-1592      TCGA-55-1594      TCGA-55-1595      TCGA-55-1596 
"SGIP1 WILD-TYPE" "SGIP1 WILD-TYPE" "SGIP1 WILD-TYPE" "SGIP1 WILD-TYPE" 
     TCGA-55-5899      TCGA-55-6543      TCGA-55-6642      TCGA-55-6712 
  "SGIP1 MUTATED" "SGIP1 WILD-TYPE" "SGIP1 WILD-TYPE" "SGIP1 WILD-TYPE" 
     TCGA-64-1676      TCGA-64-1677      TCGA-64-1678      TCGA-64-1680 
  "SGIP1 MUTATED" "SGIP1 WILD-TYPE" "SGIP1 WILD-TYPE" "SGIP1 WILD-TYPE" 
     TCGA-64-5774      TCGA-64-5775      TCGA-64-5778      TCGA-64-5779 
"SGIP1 WILD-TYPE" "SGIP1 WILD-TYPE"   "SGIP1 MUTATED" "SGIP1 WILD-TYPE" 
     TCGA-64-5781      TCGA-64-5815      TCGA-67-3770      TCGA-67-3771 
"SGIP1 WILD-TYPE" "SGIP1 WILD-TYPE" "SGIP1 WILD-TYPE" "SGIP1 WILD-TYPE" 
     TCGA-67-3772      TCGA-67-3773      TCGA-67-3774      TCGA-67-6215 
"SGIP1 WILD-TYPE" "SGIP1 WILD-TYPE" "SGIP1 WILD-TYPE" "SGIP1 WILD-TYPE" 
     TCGA-67-6216      TCGA-67-6217      TCGA-71-6725      TCGA-73-4658 
"SGIP1 WILD-TYPE" "SGIP1 WILD-TYPE" "SGIP1 WILD-TYPE" "SGIP1 WILD-TYPE" 
     TCGA-73-4659      TCGA-73-4662      TCGA-73-4666      TCGA-73-4668 
"SGIP1 WILD-TYPE" "SGIP1 WILD-TYPE" "SGIP1 WILD-TYPE" "SGIP1 WILD-TYPE" 
     TCGA-73-4670      TCGA-73-4675      TCGA-73-4676      TCGA-73-4677 
"SGIP1 WILD-TYPE" "SGIP1 WILD-TYPE" "SGIP1 WILD-TYPE" "SGIP1 WILD-TYPE" 
     TCGA-91-6828      TCGA-91-6829      TCGA-91-6831      TCGA-91-6835 
"SGIP1 WILD-TYPE" "SGIP1 WILD-TYPE" "SGIP1 WILD-TYPE" "SGIP1 WILD-TYPE" 
     TCGA-91-6836 
  "SGIP1 MUTATED" 
[1] "hr=" "3.1"
D198V2, continuous
D198V3, binary
[1] "tbl2"
                 cls
clus              [,1] [,2]
  SGIP1 MUTATED      6    5
  SGIP1 WILD-TYPE   87   74
        clus
vv       SGIP1 MUTATED SGIP1 WILD-TYPE
  FEMALE             6              87
  MALE               5              74
D198V4, continuous
[1] "Remove cluster labels:" "SGIP1 MUTATED"         
clus
  SGIP1 MUTATED SGIP1 WILD-TYPE 
              1              11 
     TCGA-35-4122      TCGA-35-4123      TCGA-35-5375      TCGA-64-1677 
"SGIP1 WILD-TYPE" "SGIP1 WILD-TYPE" "SGIP1 WILD-TYPE" "SGIP1 WILD-TYPE" 
     TCGA-71-6725      TCGA-73-4659      TCGA-73-4662      TCGA-73-4666 
"SGIP1 WILD-TYPE" "SGIP1 WILD-TYPE" "SGIP1 WILD-TYPE" "SGIP1 WILD-TYPE" 
     TCGA-73-4668      TCGA-73-4676      TCGA-75-5122 
"SGIP1 WILD-TYPE" "SGIP1 WILD-TYPE" "SGIP1 WILD-TYPE" 
D198V5, multiclass
D198V6, multiclass
    clus
vv   SGIP1 MUTATED SGIP1 WILD-TYPE
  T1             3              38
  T2             4             104
  T3             2              12
  T4             2               6
D198V7, multiclass
       clus
vv      SGIP1 MUTATED SGIP1 WILD-TYPE
  N0                6              89
  N1                3              34
  N2+N3             2              33
D198V8, multiclass
    clus
vv   SGIP1 MUTATED SGIP1 WILD-TYPE
  M0             9             128
  M1             0               9
  MX             2              20
D198V9, multiclass
     clus
vv    SGIP1 MUTATED SGIP1 WILD-TYPE
  I               6              82
  II              2              31
  III             3              36
  IV              0               9
D198V10, binary
[1] "tbl2"
                 cls
clus              [,1] [,2]
  SGIP1 MUTATED      0   11
  SGIP1 WILD-TYPE   16  145
     clus
vv    SGIP1 MUTATED SGIP1 WILD-TYPE
  NO              0              16
  YES            11             145
D198V11, continuous
D198V12, continuous
D198V13, multiclass
                                             clus
vv                                            SGIP1 MUTATED SGIP1 WILD-TYPE
  CURRENT REFORMED SMOKER FOR < OR = 15 YEARS             2              60
  CURRENT REFORMED SMOKER FOR > 15 YEARS                  4              42
  CURRENT SMOKER                                          5              23
  LIFELONG NON-SMOKER                                     0              24
D198V14, continuous

Clustering(199) Variable = OR5M10 MUTATION ANALYSIS
D199V1, survival
                  sevent
clus2               0  1
  OR5M10 MUTATED    5  1
  OR5M10 WILD-TYPE 94 49
  OR5M10 MUTATED OR5M10 WILD-TYPE 
               6              143 
  OR5M10 MUTATED OR5M10 WILD-TYPE 
               1               49 
$`OR5M10 MUTATED`
TCGA-05-4396 TCGA-38-4625 TCGA-44-3918 TCGA-44-4112 TCGA-44-5643 TCGA-44-6778 
        9.96        47.61         6.44         4.60         3.48        36.49 

$`OR5M10 WILD-TYPE`
TCGA-05-4249 TCGA-05-4250 TCGA-05-4382 TCGA-05-4384 TCGA-05-4390 TCGA-05-4397 
       38.07         3.98        19.92        14.01        37.02        24.03 
TCGA-05-4398 TCGA-05-4402 TCGA-05-4405 TCGA-05-4415 TCGA-05-4417 TCGA-05-4418 
       47.05         8.02        20.05         2.96        14.93         8.98 
TCGA-05-4420 TCGA-05-4424 TCGA-05-4426 TCGA-05-4427 TCGA-05-4430 TCGA-05-4432 
       29.95        30.02        26.01        26.01        25.02        25.02 
TCGA-05-4433 TCGA-05-4434 TCGA-05-5420 TCGA-05-5423 TCGA-05-5425 TCGA-05-5429 
       24.00        15.02         1.02         4.96         2.96         0.99 
TCGA-05-5715 TCGA-35-3615 TCGA-35-4122 TCGA-35-4123 TCGA-35-5375 TCGA-38-4626 
        2.04         0.46         7.36         5.95         8.68        85.32 
TCGA-38-4627 TCGA-38-4628 TCGA-38-4629 TCGA-38-4630 TCGA-38-4631 TCGA-38-4632 
       37.71        49.02        28.37        35.28        11.64        44.61 
TCGA-38-6178 TCGA-44-2655 TCGA-44-2656 TCGA-44-2657 TCGA-44-2659 TCGA-44-2661 
        5.19        18.87        19.10        13.15        17.39         3.39 
TCGA-44-2662 TCGA-44-2665 TCGA-44-2666 TCGA-44-2668 TCGA-44-3396 TCGA-44-3398 
       15.78        13.15         3.19         8.09        10.22         8.32 
TCGA-44-3919 TCGA-44-5645 TCGA-44-6144 TCGA-44-6145 TCGA-44-6146 TCGA-44-6147 
        6.21         6.84         0.30         3.35         9.93         7.76 
TCGA-44-6148 TCGA-44-6774 TCGA-44-6775 TCGA-44-6776 TCGA-44-6777 TCGA-44-6779 
        3.12         5.42         2.70        63.72        32.45        16.41 
TCGA-49-4486 TCGA-49-4487 TCGA-49-4488 TCGA-49-4490 TCGA-49-4494 TCGA-49-4501 
       76.21        28.11        28.57        12.66        35.54        46.72 
TCGA-49-4505 TCGA-49-4506 TCGA-49-4507 TCGA-49-4510 TCGA-49-4512 TCGA-49-4514 
       14.07        32.84         8.81        29.46        29.75        43.20 
TCGA-49-6742 TCGA-49-6743 TCGA-49-6744 TCGA-49-6745 TCGA-50-5044 TCGA-50-5045 
       15.02        12.13        12.99         4.93        20.48        71.47 
TCGA-50-5049 TCGA-50-5051 TCGA-50-5055 TCGA-50-5066 TCGA-50-5068 TCGA-50-5072 
       48.82        14.96        25.81         9.76        49.28         8.05 
TCGA-50-5930 TCGA-50-5931 TCGA-50-5932 TCGA-50-5933 TCGA-50-5935 TCGA-50-5936 
        9.27         8.78        35.87        77.88        21.47         8.45 
TCGA-50-5939 TCGA-50-5941 TCGA-50-5942 TCGA-50-5944 TCGA-50-5946 TCGA-50-6590 
       15.12         9.37         4.44        12.26        11.47        42.31 
TCGA-50-6591 TCGA-50-6592 TCGA-50-6593 TCGA-50-6594 TCGA-50-6595 TCGA-50-6597 
        3.88        25.51        11.05        12.16         6.21        33.37 
TCGA-55-1592 TCGA-55-1594 TCGA-55-1595 TCGA-55-1596 TCGA-55-5899 TCGA-55-6543 
       23.05        38.73        48.62        45.17         2.86         0.07 
TCGA-55-6642 TCGA-55-6712 TCGA-64-1676 TCGA-64-1677 TCGA-64-1678 TCGA-64-1680 
       32.61         0.79        56.81        20.65        39.09        37.02 
TCGA-64-5774 TCGA-64-5775 TCGA-64-5778 TCGA-64-5779 TCGA-64-5781 TCGA-64-5815 
       83.84         0.10        30.44        16.67        39.52         7.33 
TCGA-67-3770 TCGA-67-3771 TCGA-67-3772 TCGA-67-3773 TCGA-67-3774 TCGA-67-6215 
        0.99         1.97         0.59         2.04         0.59         0.89 
TCGA-67-6216 TCGA-67-6217 TCGA-71-6725 TCGA-73-4658 TCGA-73-4659 TCGA-73-4662 
        0.69        13.87         2.01        52.57        23.38        29.95 
TCGA-73-4666 TCGA-73-4668 TCGA-73-4670 TCGA-73-4675 TCGA-73-4676 TCGA-73-4677 
       20.28        15.35         0.46         1.32         4.01         1.25 
TCGA-91-6828 TCGA-91-6829 TCGA-91-6831 TCGA-91-6835 TCGA-91-6836 
        1.22        41.33         1.28         1.15         0.36 

  OR5M10 MUTATED OR5M10 WILD-TYPE 
            3.48             0.07 
  OR5M10 MUTATED OR5M10 WILD-TYPE 
           47.61            85.32 
  OR5M10 MUTATED OR5M10 WILD-TYPE 
            8.20            14.01 
[1] "3.5 - 47.6 (8.2)"  "0.1 - 85.3 (14.0)"
      TCGA-05-4249       TCGA-05-4250       TCGA-05-4382       TCGA-05-4384 
"OR5M10 WILD-TYPE" "OR5M10 WILD-TYPE" "OR5M10 WILD-TYPE" "OR5M10 WILD-TYPE" 
      TCGA-05-4390       TCGA-05-4396       TCGA-05-4397       TCGA-05-4398 
"OR5M10 WILD-TYPE"   "OR5M10 MUTATED" "OR5M10 WILD-TYPE" "OR5M10 WILD-TYPE" 
      TCGA-05-4402       TCGA-05-4405       TCGA-05-4415       TCGA-05-4417 
"OR5M10 WILD-TYPE" "OR5M10 WILD-TYPE" "OR5M10 WILD-TYPE" "OR5M10 WILD-TYPE" 
      TCGA-05-4418       TCGA-05-4420       TCGA-05-4424       TCGA-05-4426 
"OR5M10 WILD-TYPE" "OR5M10 WILD-TYPE" "OR5M10 WILD-TYPE" "OR5M10 WILD-TYPE" 
      TCGA-05-4427       TCGA-05-4430       TCGA-05-4432       TCGA-05-4433 
"OR5M10 WILD-TYPE" "OR5M10 WILD-TYPE" "OR5M10 WILD-TYPE" "OR5M10 WILD-TYPE" 
      TCGA-05-4434       TCGA-05-5420       TCGA-05-5423       TCGA-05-5425 
"OR5M10 WILD-TYPE" "OR5M10 WILD-TYPE" "OR5M10 WILD-TYPE" "OR5M10 WILD-TYPE" 
      TCGA-05-5429       TCGA-05-5715       TCGA-35-3615       TCGA-35-4122 
"OR5M10 WILD-TYPE" "OR5M10 WILD-TYPE" "OR5M10 WILD-TYPE" "OR5M10 WILD-TYPE" 
      TCGA-35-4123       TCGA-35-5375       TCGA-38-4625       TCGA-38-4626 
"OR5M10 WILD-TYPE" "OR5M10 WILD-TYPE"   "OR5M10 MUTATED" "OR5M10 WILD-TYPE" 
      TCGA-38-4627       TCGA-38-4628       TCGA-38-4629       TCGA-38-4630 
"OR5M10 WILD-TYPE" "OR5M10 WILD-TYPE" "OR5M10 WILD-TYPE" "OR5M10 WILD-TYPE" 
      TCGA-38-4631       TCGA-38-4632       TCGA-38-6178       TCGA-44-2655 
"OR5M10 WILD-TYPE" "OR5M10 WILD-TYPE" "OR5M10 WILD-TYPE" "OR5M10 WILD-TYPE" 
      TCGA-44-2656       TCGA-44-2657       TCGA-44-2659       TCGA-44-2661 
"OR5M10 WILD-TYPE" "OR5M10 WILD-TYPE" "OR5M10 WILD-TYPE" "OR5M10 WILD-TYPE" 
      TCGA-44-2662       TCGA-44-2665       TCGA-44-2666       TCGA-44-2668 
"OR5M10 WILD-TYPE" "OR5M10 WILD-TYPE" "OR5M10 WILD-TYPE" "OR5M10 WILD-TYPE" 
      TCGA-44-3396       TCGA-44-3398       TCGA-44-3918       TCGA-44-3919 
"OR5M10 WILD-TYPE" "OR5M10 WILD-TYPE"   "OR5M10 MUTATED" "OR5M10 WILD-TYPE" 
      TCGA-44-4112       TCGA-44-5643       TCGA-44-5645       TCGA-44-6144 
  "OR5M10 MUTATED"   "OR5M10 MUTATED" "OR5M10 WILD-TYPE" "OR5M10 WILD-TYPE" 
      TCGA-44-6145       TCGA-44-6146       TCGA-44-6147       TCGA-44-6148 
"OR5M10 WILD-TYPE" "OR5M10 WILD-TYPE" "OR5M10 WILD-TYPE" "OR5M10 WILD-TYPE" 
      TCGA-44-6774       TCGA-44-6775       TCGA-44-6776       TCGA-44-6777 
"OR5M10 WILD-TYPE" "OR5M10 WILD-TYPE" "OR5M10 WILD-TYPE" "OR5M10 WILD-TYPE" 
      TCGA-44-6778       TCGA-44-6779       TCGA-49-4486       TCGA-49-4487 
  "OR5M10 MUTATED" "OR5M10 WILD-TYPE" "OR5M10 WILD-TYPE" "OR5M10 WILD-TYPE" 
      TCGA-49-4488       TCGA-49-4490       TCGA-49-4494       TCGA-49-4501 
"OR5M10 WILD-TYPE" "OR5M10 WILD-TYPE" "OR5M10 WILD-TYPE" "OR5M10 WILD-TYPE" 
      TCGA-49-4505       TCGA-49-4506       TCGA-49-4507       TCGA-49-4510 
"OR5M10 WILD-TYPE" "OR5M10 WILD-TYPE" "OR5M10 WILD-TYPE" "OR5M10 WILD-TYPE" 
      TCGA-49-4512       TCGA-49-4514       TCGA-49-6742       TCGA-49-6743 
"OR5M10 WILD-TYPE" "OR5M10 WILD-TYPE" "OR5M10 WILD-TYPE" "OR5M10 WILD-TYPE" 
      TCGA-49-6744       TCGA-49-6745       TCGA-50-5044       TCGA-50-5045 
"OR5M10 WILD-TYPE" "OR5M10 WILD-TYPE" "OR5M10 WILD-TYPE" "OR5M10 WILD-TYPE" 
      TCGA-50-5049       TCGA-50-5051       TCGA-50-5055       TCGA-50-5066 
"OR5M10 WILD-TYPE" "OR5M10 WILD-TYPE" "OR5M10 WILD-TYPE" "OR5M10 WILD-TYPE" 
      TCGA-50-5068       TCGA-50-5072       TCGA-50-5930       TCGA-50-5931 
"OR5M10 WILD-TYPE" "OR5M10 WILD-TYPE" "OR5M10 WILD-TYPE" "OR5M10 WILD-TYPE" 
      TCGA-50-5932       TCGA-50-5933       TCGA-50-5935       TCGA-50-5936 
"OR5M10 WILD-TYPE" "OR5M10 WILD-TYPE" "OR5M10 WILD-TYPE" "OR5M10 WILD-TYPE" 
      TCGA-50-5939       TCGA-50-5941       TCGA-50-5942       TCGA-50-5944 
"OR5M10 WILD-TYPE" "OR5M10 WILD-TYPE" "OR5M10 WILD-TYPE" "OR5M10 WILD-TYPE" 
      TCGA-50-5946       TCGA-50-6590       TCGA-50-6591       TCGA-50-6592 
"OR5M10 WILD-TYPE" "OR5M10 WILD-TYPE" "OR5M10 WILD-TYPE" "OR5M10 WILD-TYPE" 
      TCGA-50-6593       TCGA-50-6594       TCGA-50-6595       TCGA-50-6597 
"OR5M10 WILD-TYPE" "OR5M10 WILD-TYPE" "OR5M10 WILD-TYPE" "OR5M10 WILD-TYPE" 
      TCGA-55-1592       TCGA-55-1594       TCGA-55-1595       TCGA-55-1596 
"OR5M10 WILD-TYPE" "OR5M10 WILD-TYPE" "OR5M10 WILD-TYPE" "OR5M10 WILD-TYPE" 
      TCGA-55-5899       TCGA-55-6543       TCGA-55-6642       TCGA-55-6712 
"OR5M10 WILD-TYPE" "OR5M10 WILD-TYPE" "OR5M10 WILD-TYPE" "OR5M10 WILD-TYPE" 
      TCGA-64-1676       TCGA-64-1677       TCGA-64-1678       TCGA-64-1680 
"OR5M10 WILD-TYPE" "OR5M10 WILD-TYPE" "OR5M10 WILD-TYPE" "OR5M10 WILD-TYPE" 
      TCGA-64-5774       TCGA-64-5775       TCGA-64-5778       TCGA-64-5779 
"OR5M10 WILD-TYPE" "OR5M10 WILD-TYPE" "OR5M10 WILD-TYPE" "OR5M10 WILD-TYPE" 
      TCGA-64-5781       TCGA-64-5815       TCGA-67-3770       TCGA-67-3771 
"OR5M10 WILD-TYPE" "OR5M10 WILD-TYPE" "OR5M10 WILD-TYPE" "OR5M10 WILD-TYPE" 
      TCGA-67-3772       TCGA-67-3773       TCGA-67-3774       TCGA-67-6215 
"OR5M10 WILD-TYPE" "OR5M10 WILD-TYPE" "OR5M10 WILD-TYPE" "OR5M10 WILD-TYPE" 
      TCGA-67-6216       TCGA-67-6217       TCGA-71-6725       TCGA-73-4658 
"OR5M10 WILD-TYPE" "OR5M10 WILD-TYPE" "OR5M10 WILD-TYPE" "OR5M10 WILD-TYPE" 
      TCGA-73-4659       TCGA-73-4662       TCGA-73-4666       TCGA-73-4668 
"OR5M10 WILD-TYPE" "OR5M10 WILD-TYPE" "OR5M10 WILD-TYPE" "OR5M10 WILD-TYPE" 
      TCGA-73-4670       TCGA-73-4675       TCGA-73-4676       TCGA-73-4677 
"OR5M10 WILD-TYPE" "OR5M10 WILD-TYPE" "OR5M10 WILD-TYPE" "OR5M10 WILD-TYPE" 
      TCGA-91-6828       TCGA-91-6829       TCGA-91-6831       TCGA-91-6835 
"OR5M10 WILD-TYPE" "OR5M10 WILD-TYPE" "OR5M10 WILD-TYPE" "OR5M10 WILD-TYPE" 
      TCGA-91-6836 
"OR5M10 WILD-TYPE" 
      TCGA-05-4249       TCGA-05-4250       TCGA-05-4382       TCGA-05-4384 
"OR5M10 WILD-TYPE" "OR5M10 WILD-TYPE" "OR5M10 WILD-TYPE" "OR5M10 WILD-TYPE" 
      TCGA-05-4390       TCGA-05-4396       TCGA-05-4397       TCGA-05-4398 
"OR5M10 WILD-TYPE"   "OR5M10 MUTATED" "OR5M10 WILD-TYPE" "OR5M10 WILD-TYPE" 
      TCGA-05-4402       TCGA-05-4405       TCGA-05-4415       TCGA-05-4417 
"OR5M10 WILD-TYPE" "OR5M10 WILD-TYPE" "OR5M10 WILD-TYPE" "OR5M10 WILD-TYPE" 
      TCGA-05-4418       TCGA-05-4420       TCGA-05-4424       TCGA-05-4426 
"OR5M10 WILD-TYPE" "OR5M10 WILD-TYPE" "OR5M10 WILD-TYPE" "OR5M10 WILD-TYPE" 
      TCGA-05-4427       TCGA-05-4430       TCGA-05-4432       TCGA-05-4433 
"OR5M10 WILD-TYPE" "OR5M10 WILD-TYPE" "OR5M10 WILD-TYPE" "OR5M10 WILD-TYPE" 
      TCGA-05-4434       TCGA-05-5420       TCGA-05-5423       TCGA-05-5425 
"OR5M10 WILD-TYPE" "OR5M10 WILD-TYPE" "OR5M10 WILD-TYPE" "OR5M10 WILD-TYPE" 
      TCGA-05-5429       TCGA-05-5715       TCGA-35-3615       TCGA-35-4122 
"OR5M10 WILD-TYPE" "OR5M10 WILD-TYPE" "OR5M10 WILD-TYPE" "OR5M10 WILD-TYPE" 
      TCGA-35-4123       TCGA-35-5375       TCGA-38-4625       TCGA-38-4626 
"OR5M10 WILD-TYPE" "OR5M10 WILD-TYPE"   "OR5M10 MUTATED" "OR5M10 WILD-TYPE" 
      TCGA-38-4627       TCGA-38-4628       TCGA-38-4629       TCGA-38-4630 
"OR5M10 WILD-TYPE" "OR5M10 WILD-TYPE" "OR5M10 WILD-TYPE" "OR5M10 WILD-TYPE" 
      TCGA-38-4631       TCGA-38-4632       TCGA-38-6178       TCGA-44-2655 
"OR5M10 WILD-TYPE" "OR5M10 WILD-TYPE" "OR5M10 WILD-TYPE" "OR5M10 WILD-TYPE" 
      TCGA-44-2656       TCGA-44-2657       TCGA-44-2659       TCGA-44-2661 
"OR5M10 WILD-TYPE" "OR5M10 WILD-TYPE" "OR5M10 WILD-TYPE" "OR5M10 WILD-TYPE" 
      TCGA-44-2662       TCGA-44-2665       TCGA-44-2666       TCGA-44-2668 
"OR5M10 WILD-TYPE" "OR5M10 WILD-TYPE" "OR5M10 WILD-TYPE" "OR5M10 WILD-TYPE" 
      TCGA-44-3396       TCGA-44-3398       TCGA-44-3918       TCGA-44-3919 
"OR5M10 WILD-TYPE" "OR5M10 WILD-TYPE"   "OR5M10 MUTATED" "OR5M10 WILD-TYPE" 
      TCGA-44-4112       TCGA-44-5643       TCGA-44-5645       TCGA-44-6144 
  "OR5M10 MUTATED"   "OR5M10 MUTATED" "OR5M10 WILD-TYPE" "OR5M10 WILD-TYPE" 
      TCGA-44-6145       TCGA-44-6146       TCGA-44-6147       TCGA-44-6148 
"OR5M10 WILD-TYPE" "OR5M10 WILD-TYPE" "OR5M10 WILD-TYPE" "OR5M10 WILD-TYPE" 
      TCGA-44-6774       TCGA-44-6775       TCGA-44-6776       TCGA-44-6777 
"OR5M10 WILD-TYPE" "OR5M10 WILD-TYPE" "OR5M10 WILD-TYPE" "OR5M10 WILD-TYPE" 
      TCGA-44-6778       TCGA-44-6779       TCGA-49-4486       TCGA-49-4487 
  "OR5M10 MUTATED" "OR5M10 WILD-TYPE" "OR5M10 WILD-TYPE" "OR5M10 WILD-TYPE" 
      TCGA-49-4488       TCGA-49-4490       TCGA-49-4494       TCGA-49-4501 
"OR5M10 WILD-TYPE" "OR5M10 WILD-TYPE" "OR5M10 WILD-TYPE" "OR5M10 WILD-TYPE" 
      TCGA-49-4505       TCGA-49-4506       TCGA-49-4507       TCGA-49-4510 
"OR5M10 WILD-TYPE" "OR5M10 WILD-TYPE" "OR5M10 WILD-TYPE" "OR5M10 WILD-TYPE" 
      TCGA-49-4512       TCGA-49-4514       TCGA-49-6742       TCGA-49-6743 
"OR5M10 WILD-TYPE" "OR5M10 WILD-TYPE" "OR5M10 WILD-TYPE" "OR5M10 WILD-TYPE" 
      TCGA-49-6744       TCGA-49-6745       TCGA-50-5044       TCGA-50-5045 
"OR5M10 WILD-TYPE" "OR5M10 WILD-TYPE" "OR5M10 WILD-TYPE" "OR5M10 WILD-TYPE" 
      TCGA-50-5049       TCGA-50-5051       TCGA-50-5055       TCGA-50-5066 
"OR5M10 WILD-TYPE" "OR5M10 WILD-TYPE" "OR5M10 WILD-TYPE" "OR5M10 WILD-TYPE" 
      TCGA-50-5068       TCGA-50-5072       TCGA-50-5930       TCGA-50-5931 
"OR5M10 WILD-TYPE" "OR5M10 WILD-TYPE" "OR5M10 WILD-TYPE" "OR5M10 WILD-TYPE" 
      TCGA-50-5932       TCGA-50-5933       TCGA-50-5935       TCGA-50-5936 
"OR5M10 WILD-TYPE" "OR5M10 WILD-TYPE" "OR5M10 WILD-TYPE" "OR5M10 WILD-TYPE" 
      TCGA-50-5939       TCGA-50-5941       TCGA-50-5942       TCGA-50-5944 
"OR5M10 WILD-TYPE" "OR5M10 WILD-TYPE" "OR5M10 WILD-TYPE" "OR5M10 WILD-TYPE" 
      TCGA-50-5946       TCGA-50-6590       TCGA-50-6591       TCGA-50-6592 
"OR5M10 WILD-TYPE" "OR5M10 WILD-TYPE" "OR5M10 WILD-TYPE" "OR5M10 WILD-TYPE" 
      TCGA-50-6593       TCGA-50-6594       TCGA-50-6595       TCGA-50-6597 
"OR5M10 WILD-TYPE" "OR5M10 WILD-TYPE" "OR5M10 WILD-TYPE" "OR5M10 WILD-TYPE" 
      TCGA-55-1592       TCGA-55-1594       TCGA-55-1595       TCGA-55-1596 
"OR5M10 WILD-TYPE" "OR5M10 WILD-TYPE" "OR5M10 WILD-TYPE" "OR5M10 WILD-TYPE" 
      TCGA-55-5899       TCGA-55-6543       TCGA-55-6642       TCGA-55-6712 
"OR5M10 WILD-TYPE" "OR5M10 WILD-TYPE" "OR5M10 WILD-TYPE" "OR5M10 WILD-TYPE" 
      TCGA-64-1676       TCGA-64-1677       TCGA-64-1678       TCGA-64-1680 
"OR5M10 WILD-TYPE" "OR5M10 WILD-TYPE" "OR5M10 WILD-TYPE" "OR5M10 WILD-TYPE" 
      TCGA-64-5774       TCGA-64-5775       TCGA-64-5778       TCGA-64-5779 
"OR5M10 WILD-TYPE" "OR5M10 WILD-TYPE" "OR5M10 WILD-TYPE" "OR5M10 WILD-TYPE" 
      TCGA-64-5781       TCGA-64-5815       TCGA-67-3770       TCGA-67-3771 
"OR5M10 WILD-TYPE" "OR5M10 WILD-TYPE" "OR5M10 WILD-TYPE" "OR5M10 WILD-TYPE" 
      TCGA-67-3772       TCGA-67-3773       TCGA-67-3774       TCGA-67-6215 
"OR5M10 WILD-TYPE" "OR5M10 WILD-TYPE" "OR5M10 WILD-TYPE" "OR5M10 WILD-TYPE" 
      TCGA-67-6216       TCGA-67-6217       TCGA-71-6725       TCGA-73-4658 
"OR5M10 WILD-TYPE" "OR5M10 WILD-TYPE" "OR5M10 WILD-TYPE" "OR5M10 WILD-TYPE" 
      TCGA-73-4659       TCGA-73-4662       TCGA-73-4666       TCGA-73-4668 
"OR5M10 WILD-TYPE" "OR5M10 WILD-TYPE" "OR5M10 WILD-TYPE" "OR5M10 WILD-TYPE" 
      TCGA-73-4670       TCGA-73-4675       TCGA-73-4676       TCGA-73-4677 
"OR5M10 WILD-TYPE" "OR5M10 WILD-TYPE" "OR5M10 WILD-TYPE" "OR5M10 WILD-TYPE" 
      TCGA-91-6828       TCGA-91-6829       TCGA-91-6831       TCGA-91-6835 
"OR5M10 WILD-TYPE" "OR5M10 WILD-TYPE" "OR5M10 WILD-TYPE" "OR5M10 WILD-TYPE" 
      TCGA-91-6836 
"OR5M10 WILD-TYPE" 
      TCGA-05-4249       TCGA-05-4250       TCGA-05-4382       TCGA-05-4384 
"OR5M10 WILD-TYPE" "OR5M10 WILD-TYPE" "OR5M10 WILD-TYPE" "OR5M10 WILD-TYPE" 
      TCGA-05-4390       TCGA-05-4396       TCGA-05-4397       TCGA-05-4398 
"OR5M10 WILD-TYPE"   "OR5M10 MUTATED" "OR5M10 WILD-TYPE" "OR5M10 WILD-TYPE" 
      TCGA-05-4402       TCGA-05-4405       TCGA-05-4415       TCGA-05-4417 
"OR5M10 WILD-TYPE" "OR5M10 WILD-TYPE" "OR5M10 WILD-TYPE" "OR5M10 WILD-TYPE" 
      TCGA-05-4418       TCGA-05-4420       TCGA-05-4424       TCGA-05-4426 
"OR5M10 WILD-TYPE" "OR5M10 WILD-TYPE" "OR5M10 WILD-TYPE" "OR5M10 WILD-TYPE" 
      TCGA-05-4427       TCGA-05-4430       TCGA-05-4432       TCGA-05-4433 
"OR5M10 WILD-TYPE" "OR5M10 WILD-TYPE" "OR5M10 WILD-TYPE" "OR5M10 WILD-TYPE" 
      TCGA-05-4434       TCGA-05-5420       TCGA-05-5423       TCGA-05-5425 
"OR5M10 WILD-TYPE" "OR5M10 WILD-TYPE" "OR5M10 WILD-TYPE" "OR5M10 WILD-TYPE" 
      TCGA-05-5429       TCGA-05-5715       TCGA-35-3615       TCGA-35-4122 
"OR5M10 WILD-TYPE" "OR5M10 WILD-TYPE" "OR5M10 WILD-TYPE" "OR5M10 WILD-TYPE" 
      TCGA-35-4123       TCGA-35-5375       TCGA-38-4625       TCGA-38-4626 
"OR5M10 WILD-TYPE" "OR5M10 WILD-TYPE"   "OR5M10 MUTATED" "OR5M10 WILD-TYPE" 
      TCGA-38-4627       TCGA-38-4628       TCGA-38-4629       TCGA-38-4630 
"OR5M10 WILD-TYPE" "OR5M10 WILD-TYPE" "OR5M10 WILD-TYPE" "OR5M10 WILD-TYPE" 
      TCGA-38-4631       TCGA-38-4632       TCGA-38-6178       TCGA-44-2655 
"OR5M10 WILD-TYPE" "OR5M10 WILD-TYPE" "OR5M10 WILD-TYPE" "OR5M10 WILD-TYPE" 
      TCGA-44-2656       TCGA-44-2657       TCGA-44-2659       TCGA-44-2661 
"OR5M10 WILD-TYPE" "OR5M10 WILD-TYPE" "OR5M10 WILD-TYPE" "OR5M10 WILD-TYPE" 
      TCGA-44-2662       TCGA-44-2665       TCGA-44-2666       TCGA-44-2668 
"OR5M10 WILD-TYPE" "OR5M10 WILD-TYPE" "OR5M10 WILD-TYPE" "OR5M10 WILD-TYPE" 
      TCGA-44-3396       TCGA-44-3398       TCGA-44-3918       TCGA-44-3919 
"OR5M10 WILD-TYPE" "OR5M10 WILD-TYPE"   "OR5M10 MUTATED" "OR5M10 WILD-TYPE" 
      TCGA-44-4112       TCGA-44-5643       TCGA-44-5645       TCGA-44-6144 
  "OR5M10 MUTATED"   "OR5M10 MUTATED" "OR5M10 WILD-TYPE" "OR5M10 WILD-TYPE" 
      TCGA-44-6145       TCGA-44-6146       TCGA-44-6147       TCGA-44-6148 
"OR5M10 WILD-TYPE" "OR5M10 WILD-TYPE" "OR5M10 WILD-TYPE" "OR5M10 WILD-TYPE" 
      TCGA-44-6774       TCGA-44-6775       TCGA-44-6776       TCGA-44-6777 
"OR5M10 WILD-TYPE" "OR5M10 WILD-TYPE" "OR5M10 WILD-TYPE" "OR5M10 WILD-TYPE" 
      TCGA-44-6778       TCGA-44-6779       TCGA-49-4486       TCGA-49-4487 
  "OR5M10 MUTATED" "OR5M10 WILD-TYPE" "OR5M10 WILD-TYPE" "OR5M10 WILD-TYPE" 
      TCGA-49-4488       TCGA-49-4490       TCGA-49-4494       TCGA-49-4501 
"OR5M10 WILD-TYPE" "OR5M10 WILD-TYPE" "OR5M10 WILD-TYPE" "OR5M10 WILD-TYPE" 
      TCGA-49-4505       TCGA-49-4506       TCGA-49-4507       TCGA-49-4510 
"OR5M10 WILD-TYPE" "OR5M10 WILD-TYPE" "OR5M10 WILD-TYPE" "OR5M10 WILD-TYPE" 
      TCGA-49-4512       TCGA-49-4514       TCGA-49-6742       TCGA-49-6743 
"OR5M10 WILD-TYPE" "OR5M10 WILD-TYPE" "OR5M10 WILD-TYPE" "OR5M10 WILD-TYPE" 
      TCGA-49-6744       TCGA-49-6745       TCGA-50-5044       TCGA-50-5045 
"OR5M10 WILD-TYPE" "OR5M10 WILD-TYPE" "OR5M10 WILD-TYPE" "OR5M10 WILD-TYPE" 
      TCGA-50-5049       TCGA-50-5051       TCGA-50-5055       TCGA-50-5066 
"OR5M10 WILD-TYPE" "OR5M10 WILD-TYPE" "OR5M10 WILD-TYPE" "OR5M10 WILD-TYPE" 
      TCGA-50-5068       TCGA-50-5072       TCGA-50-5930       TCGA-50-5931 
"OR5M10 WILD-TYPE" "OR5M10 WILD-TYPE" "OR5M10 WILD-TYPE" "OR5M10 WILD-TYPE" 
      TCGA-50-5932       TCGA-50-5933       TCGA-50-5935       TCGA-50-5936 
"OR5M10 WILD-TYPE" "OR5M10 WILD-TYPE" "OR5M10 WILD-TYPE" "OR5M10 WILD-TYPE" 
      TCGA-50-5939       TCGA-50-5941       TCGA-50-5942       TCGA-50-5944 
"OR5M10 WILD-TYPE" "OR5M10 WILD-TYPE" "OR5M10 WILD-TYPE" "OR5M10 WILD-TYPE" 
      TCGA-50-5946       TCGA-50-6590       TCGA-50-6591       TCGA-50-6592 
"OR5M10 WILD-TYPE" "OR5M10 WILD-TYPE" "OR5M10 WILD-TYPE" "OR5M10 WILD-TYPE" 
      TCGA-50-6593       TCGA-50-6594       TCGA-50-6595       TCGA-50-6597 
"OR5M10 WILD-TYPE" "OR5M10 WILD-TYPE" "OR5M10 WILD-TYPE" "OR5M10 WILD-TYPE" 
      TCGA-55-1592       TCGA-55-1594       TCGA-55-1595       TCGA-55-1596 
"OR5M10 WILD-TYPE" "OR5M10 WILD-TYPE" "OR5M10 WILD-TYPE" "OR5M10 WILD-TYPE" 
      TCGA-55-5899       TCGA-55-6543       TCGA-55-6642       TCGA-55-6712 
"OR5M10 WILD-TYPE" "OR5M10 WILD-TYPE" "OR5M10 WILD-TYPE" "OR5M10 WILD-TYPE" 
      TCGA-64-1676       TCGA-64-1677       TCGA-64-1678       TCGA-64-1680 
"OR5M10 WILD-TYPE" "OR5M10 WILD-TYPE" "OR5M10 WILD-TYPE" "OR5M10 WILD-TYPE" 
      TCGA-64-5774       TCGA-64-5775       TCGA-64-5778       TCGA-64-5779 
"OR5M10 WILD-TYPE" "OR5M10 WILD-TYPE" "OR5M10 WILD-TYPE" "OR5M10 WILD-TYPE" 
      TCGA-64-5781       TCGA-64-5815       TCGA-67-3770       TCGA-67-3771 
"OR5M10 WILD-TYPE" "OR5M10 WILD-TYPE" "OR5M10 WILD-TYPE" "OR5M10 WILD-TYPE" 
      TCGA-67-3772       TCGA-67-3773       TCGA-67-3774       TCGA-67-6215 
"OR5M10 WILD-TYPE" "OR5M10 WILD-TYPE" "OR5M10 WILD-TYPE" "OR5M10 WILD-TYPE" 
      TCGA-67-6216       TCGA-67-6217       TCGA-71-6725       TCGA-73-4658 
"OR5M10 WILD-TYPE" "OR5M10 WILD-TYPE" "OR5M10 WILD-TYPE" "OR5M10 WILD-TYPE" 
      TCGA-73-4659       TCGA-73-4662       TCGA-73-4666       TCGA-73-4668 
"OR5M10 WILD-TYPE" "OR5M10 WILD-TYPE" "OR5M10 WILD-TYPE" "OR5M10 WILD-TYPE" 
      TCGA-73-4670       TCGA-73-4675       TCGA-73-4676       TCGA-73-4677 
"OR5M10 WILD-TYPE" "OR5M10 WILD-TYPE" "OR5M10 WILD-TYPE" "OR5M10 WILD-TYPE" 
      TCGA-91-6828       TCGA-91-6829       TCGA-91-6831       TCGA-91-6835 
"OR5M10 WILD-TYPE" "OR5M10 WILD-TYPE" "OR5M10 WILD-TYPE" "OR5M10 WILD-TYPE" 
      TCGA-91-6836 
"OR5M10 WILD-TYPE" 
[1] "hr=" "1.9"
D199V2, continuous
D199V3, binary
[1] "tbl2"
                  cls
clus               [,1] [,2]
  OR5M10 MUTATED      3    3
  OR5M10 WILD-TYPE   90   76
        clus
vv       OR5M10 MUTATED OR5M10 WILD-TYPE
  FEMALE              3               90
  MALE                3               76
D199V4, continuous
D199V5, multiclass
D199V6, multiclass
    clus
vv   OR5M10 MUTATED OR5M10 WILD-TYPE
  T1              2               39
  T2              3              105
  T3              0               14
  T4              1                7
D199V7, multiclass
       clus
vv      OR5M10 MUTATED OR5M10 WILD-TYPE
  N0                 4               91
  N1                 1               36
  N2+N3              1               34
D199V8, multiclass
    clus
vv   OR5M10 MUTATED OR5M10 WILD-TYPE
  M0              5              132
  M1              0                9
  MX              1               21
D199V9, multiclass
     clus
vv    OR5M10 MUTATED OR5M10 WILD-TYPE
  I                4               84
  II               0               33
  III              2               37
  IV               0                9
D199V10, binary
[1] "tbl2"
                  cls
clus               [,1] [,2]
  OR5M10 MUTATED      1    5
  OR5M10 WILD-TYPE   15  151
     clus
vv    OR5M10 MUTATED OR5M10 WILD-TYPE
  NO               1               15
  YES              5              151
D199V11, continuous
D199V12, continuous
D199V13, multiclass
                                             clus
vv                                            OR5M10 MUTATED OR5M10 WILD-TYPE
  CURRENT REFORMED SMOKER FOR < OR = 15 YEARS              1               61
  CURRENT REFORMED SMOKER FOR > 15 YEARS                   3               43
  CURRENT SMOKER                                           2               26
  LIFELONG NON-SMOKER                                      0               24
D199V14, continuous

Clustering(200) Variable = RGS7 MUTATION ANALYSIS
D200V1, survival
                sevent
clus2             0  1
  RGS7 MUTATED    7  5
  RGS7 WILD-TYPE 92 45
  RGS7 MUTATED RGS7 WILD-TYPE 
            12            137 
  RGS7 MUTATED RGS7 WILD-TYPE 
             5             45 
$`RGS7 MUTATED`
TCGA-05-4250 TCGA-05-4382 TCGA-05-4396 TCGA-05-4424 TCGA-49-4488 TCGA-49-4514 
        3.98        19.92         9.96        30.02        28.57        43.20 
TCGA-50-5049 TCGA-50-5051 TCGA-50-6590 TCGA-50-6594 TCGA-55-5899 TCGA-91-6836 
       48.82        14.96        42.31        12.16         2.86         0.36 

$`RGS7 WILD-TYPE`
TCGA-05-4249 TCGA-05-4384 TCGA-05-4390 TCGA-05-4397 TCGA-05-4398 TCGA-05-4402 
       38.07        14.01        37.02        24.03        47.05         8.02 
TCGA-05-4405 TCGA-05-4415 TCGA-05-4417 TCGA-05-4418 TCGA-05-4420 TCGA-05-4426 
       20.05         2.96        14.93         8.98        29.95        26.01 
TCGA-05-4427 TCGA-05-4430 TCGA-05-4432 TCGA-05-4433 TCGA-05-4434 TCGA-05-5420 
       26.01        25.02        25.02        24.00        15.02         1.02 
TCGA-05-5423 TCGA-05-5425 TCGA-05-5429 TCGA-05-5715 TCGA-35-3615 TCGA-35-4122 
        4.96         2.96         0.99         2.04         0.46         7.36 
TCGA-35-4123 TCGA-35-5375 TCGA-38-4625 TCGA-38-4626 TCGA-38-4627 TCGA-38-4628 
        5.95         8.68        47.61        85.32        37.71        49.02 
TCGA-38-4629 TCGA-38-4630 TCGA-38-4631 TCGA-38-4632 TCGA-38-6178 TCGA-44-2655 
       28.37        35.28        11.64        44.61         5.19        18.87 
TCGA-44-2656 TCGA-44-2657 TCGA-44-2659 TCGA-44-2661 TCGA-44-2662 TCGA-44-2665 
       19.10        13.15        17.39         3.39        15.78        13.15 
TCGA-44-2666 TCGA-44-2668 TCGA-44-3396 TCGA-44-3398 TCGA-44-3918 TCGA-44-3919 
        3.19         8.09        10.22         8.32         6.44         6.21 
TCGA-44-4112 TCGA-44-5643 TCGA-44-5645 TCGA-44-6144 TCGA-44-6145 TCGA-44-6146 
        4.60         3.48         6.84         0.30         3.35         9.93 
TCGA-44-6147 TCGA-44-6148 TCGA-44-6774 TCGA-44-6775 TCGA-44-6776 TCGA-44-6777 
        7.76         3.12         5.42         2.70        63.72        32.45 
TCGA-44-6778 TCGA-44-6779 TCGA-49-4486 TCGA-49-4487 TCGA-49-4490 TCGA-49-4494 
       36.49        16.41        76.21        28.11        12.66        35.54 
TCGA-49-4501 TCGA-49-4505 TCGA-49-4506 TCGA-49-4507 TCGA-49-4510 TCGA-49-4512 
       46.72        14.07        32.84         8.81        29.46        29.75 
TCGA-49-6742 TCGA-49-6743 TCGA-49-6744 TCGA-49-6745 TCGA-50-5044 TCGA-50-5045 
       15.02        12.13        12.99         4.93        20.48        71.47 
TCGA-50-5055 TCGA-50-5066 TCGA-50-5068 TCGA-50-5072 TCGA-50-5930 TCGA-50-5931 
       25.81         9.76        49.28         8.05         9.27         8.78 
TCGA-50-5932 TCGA-50-5933 TCGA-50-5935 TCGA-50-5936 TCGA-50-5939 TCGA-50-5941 
       35.87        77.88        21.47         8.45        15.12         9.37 
TCGA-50-5942 TCGA-50-5944 TCGA-50-5946 TCGA-50-6591 TCGA-50-6592 TCGA-50-6593 
        4.44        12.26        11.47         3.88        25.51        11.05 
TCGA-50-6595 TCGA-50-6597 TCGA-55-1592 TCGA-55-1594 TCGA-55-1595 TCGA-55-1596 
        6.21        33.37        23.05        38.73        48.62        45.17 
TCGA-55-6543 TCGA-55-6642 TCGA-55-6712 TCGA-64-1676 TCGA-64-1677 TCGA-64-1678 
        0.07        32.61         0.79        56.81        20.65        39.09 
TCGA-64-1680 TCGA-64-5774 TCGA-64-5775 TCGA-64-5778 TCGA-64-5779 TCGA-64-5781 
       37.02        83.84         0.10        30.44        16.67        39.52 
TCGA-64-5815 TCGA-67-3770 TCGA-67-3771 TCGA-67-3772 TCGA-67-3773 TCGA-67-3774 
        7.33         0.99         1.97         0.59         2.04         0.59 
TCGA-67-6215 TCGA-67-6216 TCGA-67-6217 TCGA-71-6725 TCGA-73-4658 TCGA-73-4659 
        0.89         0.69        13.87         2.01        52.57        23.38 
TCGA-73-4662 TCGA-73-4666 TCGA-73-4668 TCGA-73-4670 TCGA-73-4675 TCGA-73-4676 
       29.95        20.28        15.35         0.46         1.32         4.01 
TCGA-73-4677 TCGA-91-6828 TCGA-91-6829 TCGA-91-6831 TCGA-91-6835 
        1.25         1.22        41.33         1.28         1.15 

  RGS7 MUTATED RGS7 WILD-TYPE 
          0.36           0.07 
  RGS7 MUTATED RGS7 WILD-TYPE 
         48.82          85.32 
  RGS7 MUTATED RGS7 WILD-TYPE 
         17.44          13.15 
[1] "0.4 - 48.8 (17.4)" "0.1 - 85.3 (13.2)"
    TCGA-05-4249     TCGA-05-4250     TCGA-05-4382     TCGA-05-4384 
"RGS7 WILD-TYPE"   "RGS7 MUTATED"   "RGS7 MUTATED" "RGS7 WILD-TYPE" 
    TCGA-05-4390     TCGA-05-4396     TCGA-05-4397     TCGA-05-4398 
"RGS7 WILD-TYPE"   "RGS7 MUTATED" "RGS7 WILD-TYPE" "RGS7 WILD-TYPE" 
    TCGA-05-4402     TCGA-05-4405     TCGA-05-4415     TCGA-05-4417 
"RGS7 WILD-TYPE" "RGS7 WILD-TYPE" "RGS7 WILD-TYPE" "RGS7 WILD-TYPE" 
    TCGA-05-4418     TCGA-05-4420     TCGA-05-4424     TCGA-05-4426 
"RGS7 WILD-TYPE" "RGS7 WILD-TYPE"   "RGS7 MUTATED" "RGS7 WILD-TYPE" 
    TCGA-05-4427     TCGA-05-4430     TCGA-05-4432     TCGA-05-4433 
"RGS7 WILD-TYPE" "RGS7 WILD-TYPE" "RGS7 WILD-TYPE" "RGS7 WILD-TYPE" 
    TCGA-05-4434     TCGA-05-5420     TCGA-05-5423     TCGA-05-5425 
"RGS7 WILD-TYPE" "RGS7 WILD-TYPE" "RGS7 WILD-TYPE" "RGS7 WILD-TYPE" 
    TCGA-05-5429     TCGA-05-5715     TCGA-35-3615     TCGA-35-4122 
"RGS7 WILD-TYPE" "RGS7 WILD-TYPE" "RGS7 WILD-TYPE" "RGS7 WILD-TYPE" 
    TCGA-35-4123     TCGA-35-5375     TCGA-38-4625     TCGA-38-4626 
"RGS7 WILD-TYPE" "RGS7 WILD-TYPE" "RGS7 WILD-TYPE" "RGS7 WILD-TYPE" 
    TCGA-38-4627     TCGA-38-4628     TCGA-38-4629     TCGA-38-4630 
"RGS7 WILD-TYPE" "RGS7 WILD-TYPE" "RGS7 WILD-TYPE" "RGS7 WILD-TYPE" 
    TCGA-38-4631     TCGA-38-4632     TCGA-38-6178     TCGA-44-2655 
"RGS7 WILD-TYPE" "RGS7 WILD-TYPE" "RGS7 WILD-TYPE" "RGS7 WILD-TYPE" 
    TCGA-44-2656     TCGA-44-2657     TCGA-44-2659     TCGA-44-2661 
"RGS7 WILD-TYPE" "RGS7 WILD-TYPE" "RGS7 WILD-TYPE" "RGS7 WILD-TYPE" 
    TCGA-44-2662     TCGA-44-2665     TCGA-44-2666     TCGA-44-2668 
"RGS7 WILD-TYPE" "RGS7 WILD-TYPE" "RGS7 WILD-TYPE" "RGS7 WILD-TYPE" 
    TCGA-44-3396     TCGA-44-3398     TCGA-44-3918     TCGA-44-3919 
"RGS7 WILD-TYPE" "RGS7 WILD-TYPE" "RGS7 WILD-TYPE" "RGS7 WILD-TYPE" 
    TCGA-44-4112     TCGA-44-5643     TCGA-44-5645     TCGA-44-6144 
"RGS7 WILD-TYPE" "RGS7 WILD-TYPE" "RGS7 WILD-TYPE" "RGS7 WILD-TYPE" 
    TCGA-44-6145     TCGA-44-6146     TCGA-44-6147     TCGA-44-6148 
"RGS7 WILD-TYPE" "RGS7 WILD-TYPE" "RGS7 WILD-TYPE" "RGS7 WILD-TYPE" 
    TCGA-44-6774     TCGA-44-6775     TCGA-44-6776     TCGA-44-6777 
"RGS7 WILD-TYPE" "RGS7 WILD-TYPE" "RGS7 WILD-TYPE" "RGS7 WILD-TYPE" 
    TCGA-44-6778     TCGA-44-6779     TCGA-49-4486     TCGA-49-4487 
"RGS7 WILD-TYPE" "RGS7 WILD-TYPE" "RGS7 WILD-TYPE" "RGS7 WILD-TYPE" 
    TCGA-49-4488     TCGA-49-4490     TCGA-49-4494     TCGA-49-4501 
  "RGS7 MUTATED" "RGS7 WILD-TYPE" "RGS7 WILD-TYPE" "RGS7 WILD-TYPE" 
    TCGA-49-4505     TCGA-49-4506     TCGA-49-4507     TCGA-49-4510 
"RGS7 WILD-TYPE" "RGS7 WILD-TYPE" "RGS7 WILD-TYPE" "RGS7 WILD-TYPE" 
    TCGA-49-4512     TCGA-49-4514     TCGA-49-6742     TCGA-49-6743 
"RGS7 WILD-TYPE"   "RGS7 MUTATED" "RGS7 WILD-TYPE" "RGS7 WILD-TYPE" 
    TCGA-49-6744     TCGA-49-6745     TCGA-50-5044     TCGA-50-5045 
"RGS7 WILD-TYPE" "RGS7 WILD-TYPE" "RGS7 WILD-TYPE" "RGS7 WILD-TYPE" 
    TCGA-50-5049     TCGA-50-5051     TCGA-50-5055     TCGA-50-5066 
  "RGS7 MUTATED"   "RGS7 MUTATED" "RGS7 WILD-TYPE" "RGS7 WILD-TYPE" 
    TCGA-50-5068     TCGA-50-5072     TCGA-50-5930     TCGA-50-5931 
"RGS7 WILD-TYPE" "RGS7 WILD-TYPE" "RGS7 WILD-TYPE" "RGS7 WILD-TYPE" 
    TCGA-50-5932     TCGA-50-5933     TCGA-50-5935     TCGA-50-5936 
"RGS7 WILD-TYPE" "RGS7 WILD-TYPE" "RGS7 WILD-TYPE" "RGS7 WILD-TYPE" 
    TCGA-50-5939     TCGA-50-5941     TCGA-50-5942     TCGA-50-5944 
"RGS7 WILD-TYPE" "RGS7 WILD-TYPE" "RGS7 WILD-TYPE" "RGS7 WILD-TYPE" 
    TCGA-50-5946     TCGA-50-6590     TCGA-50-6591     TCGA-50-6592 
"RGS7 WILD-TYPE"   "RGS7 MUTATED" "RGS7 WILD-TYPE" "RGS7 WILD-TYPE" 
    TCGA-50-6593     TCGA-50-6594     TCGA-50-6595     TCGA-50-6597 
"RGS7 WILD-TYPE"   "RGS7 MUTATED" "RGS7 WILD-TYPE" "RGS7 WILD-TYPE" 
    TCGA-55-1592     TCGA-55-1594     TCGA-55-1595     TCGA-55-1596 
"RGS7 WILD-TYPE" "RGS7 WILD-TYPE" "RGS7 WILD-TYPE" "RGS7 WILD-TYPE" 
    TCGA-55-5899     TCGA-55-6543     TCGA-55-6642     TCGA-55-6712 
  "RGS7 MUTATED" "RGS7 WILD-TYPE" "RGS7 WILD-TYPE" "RGS7 WILD-TYPE" 
    TCGA-64-1676     TCGA-64-1677     TCGA-64-1678     TCGA-64-1680 
"RGS7 WILD-TYPE" "RGS7 WILD-TYPE" "RGS7 WILD-TYPE" "RGS7 WILD-TYPE" 
    TCGA-64-5774     TCGA-64-5775     TCGA-64-5778     TCGA-64-5779 
"RGS7 WILD-TYPE" "RGS7 WILD-TYPE" "RGS7 WILD-TYPE" "RGS7 WILD-TYPE" 
    TCGA-64-5781     TCGA-64-5815     TCGA-67-3770     TCGA-67-3771 
"RGS7 WILD-TYPE" "RGS7 WILD-TYPE" "RGS7 WILD-TYPE" "RGS7 WILD-TYPE" 
    TCGA-67-3772     TCGA-67-3773     TCGA-67-3774     TCGA-67-6215 
"RGS7 WILD-TYPE" "RGS7 WILD-TYPE" "RGS7 WILD-TYPE" "RGS7 WILD-TYPE" 
    TCGA-67-6216     TCGA-67-6217     TCGA-71-6725     TCGA-73-4658 
"RGS7 WILD-TYPE" "RGS7 WILD-TYPE" "RGS7 WILD-TYPE" "RGS7 WILD-TYPE" 
    TCGA-73-4659     TCGA-73-4662     TCGA-73-4666     TCGA-73-4668 
"RGS7 WILD-TYPE" "RGS7 WILD-TYPE" "RGS7 WILD-TYPE" "RGS7 WILD-TYPE" 
    TCGA-73-4670     TCGA-73-4675     TCGA-73-4676     TCGA-73-4677 
"RGS7 WILD-TYPE" "RGS7 WILD-TYPE" "RGS7 WILD-TYPE" "RGS7 WILD-TYPE" 
    TCGA-91-6828     TCGA-91-6829     TCGA-91-6831     TCGA-91-6835 
"RGS7 WILD-TYPE" "RGS7 WILD-TYPE" "RGS7 WILD-TYPE" "RGS7 WILD-TYPE" 
    TCGA-91-6836 
  "RGS7 MUTATED" 
    TCGA-05-4249     TCGA-05-4250     TCGA-05-4382     TCGA-05-4384 
"RGS7 WILD-TYPE"   "RGS7 MUTATED"   "RGS7 MUTATED" "RGS7 WILD-TYPE" 
    TCGA-05-4390     TCGA-05-4396     TCGA-05-4397     TCGA-05-4398 
"RGS7 WILD-TYPE"   "RGS7 MUTATED" "RGS7 WILD-TYPE" "RGS7 WILD-TYPE" 
    TCGA-05-4402     TCGA-05-4405     TCGA-05-4415     TCGA-05-4417 
"RGS7 WILD-TYPE" "RGS7 WILD-TYPE" "RGS7 WILD-TYPE" "RGS7 WILD-TYPE" 
    TCGA-05-4418     TCGA-05-4420     TCGA-05-4424     TCGA-05-4426 
"RGS7 WILD-TYPE" "RGS7 WILD-TYPE"   "RGS7 MUTATED" "RGS7 WILD-TYPE" 
    TCGA-05-4427     TCGA-05-4430     TCGA-05-4432     TCGA-05-4433 
"RGS7 WILD-TYPE" "RGS7 WILD-TYPE" "RGS7 WILD-TYPE" "RGS7 WILD-TYPE" 
    TCGA-05-4434     TCGA-05-5420     TCGA-05-5423     TCGA-05-5425 
"RGS7 WILD-TYPE" "RGS7 WILD-TYPE" "RGS7 WILD-TYPE" "RGS7 WILD-TYPE" 
    TCGA-05-5429     TCGA-05-5715     TCGA-35-3615     TCGA-35-4122 
"RGS7 WILD-TYPE" "RGS7 WILD-TYPE" "RGS7 WILD-TYPE" "RGS7 WILD-TYPE" 
    TCGA-35-4123     TCGA-35-5375     TCGA-38-4625     TCGA-38-4626 
"RGS7 WILD-TYPE" "RGS7 WILD-TYPE" "RGS7 WILD-TYPE" "RGS7 WILD-TYPE" 
    TCGA-38-4627     TCGA-38-4628     TCGA-38-4629     TCGA-38-4630 
"RGS7 WILD-TYPE" "RGS7 WILD-TYPE" "RGS7 WILD-TYPE" "RGS7 WILD-TYPE" 
    TCGA-38-4631     TCGA-38-4632     TCGA-38-6178     TCGA-44-2655 
"RGS7 WILD-TYPE" "RGS7 WILD-TYPE" "RGS7 WILD-TYPE" "RGS7 WILD-TYPE" 
    TCGA-44-2656     TCGA-44-2657     TCGA-44-2659     TCGA-44-2661 
"RGS7 WILD-TYPE" "RGS7 WILD-TYPE" "RGS7 WILD-TYPE" "RGS7 WILD-TYPE" 
    TCGA-44-2662     TCGA-44-2665     TCGA-44-2666     TCGA-44-2668 
"RGS7 WILD-TYPE" "RGS7 WILD-TYPE" "RGS7 WILD-TYPE" "RGS7 WILD-TYPE" 
    TCGA-44-3396     TCGA-44-3398     TCGA-44-3918     TCGA-44-3919 
"RGS7 WILD-TYPE" "RGS7 WILD-TYPE" "RGS7 WILD-TYPE" "RGS7 WILD-TYPE" 
    TCGA-44-4112     TCGA-44-5643     TCGA-44-5645     TCGA-44-6144 
"RGS7 WILD-TYPE" "RGS7 WILD-TYPE" "RGS7 WILD-TYPE" "RGS7 WILD-TYPE" 
    TCGA-44-6145     TCGA-44-6146     TCGA-44-6147     TCGA-44-6148 
"RGS7 WILD-TYPE" "RGS7 WILD-TYPE" "RGS7 WILD-TYPE" "RGS7 WILD-TYPE" 
    TCGA-44-6774     TCGA-44-6775     TCGA-44-6776     TCGA-44-6777 
"RGS7 WILD-TYPE" "RGS7 WILD-TYPE" "RGS7 WILD-TYPE" "RGS7 WILD-TYPE" 
    TCGA-44-6778     TCGA-44-6779     TCGA-49-4486     TCGA-49-4487 
"RGS7 WILD-TYPE" "RGS7 WILD-TYPE" "RGS7 WILD-TYPE" "RGS7 WILD-TYPE" 
    TCGA-49-4488     TCGA-49-4490     TCGA-49-4494     TCGA-49-4501 
  "RGS7 MUTATED" "RGS7 WILD-TYPE" "RGS7 WILD-TYPE" "RGS7 WILD-TYPE" 
    TCGA-49-4505     TCGA-49-4506     TCGA-49-4507     TCGA-49-4510 
"RGS7 WILD-TYPE" "RGS7 WILD-TYPE" "RGS7 WILD-TYPE" "RGS7 WILD-TYPE" 
    TCGA-49-4512     TCGA-49-4514     TCGA-49-6742     TCGA-49-6743 
"RGS7 WILD-TYPE"   "RGS7 MUTATED" "RGS7 WILD-TYPE" "RGS7 WILD-TYPE" 
    TCGA-49-6744     TCGA-49-6745     TCGA-50-5044     TCGA-50-5045 
"RGS7 WILD-TYPE" "RGS7 WILD-TYPE" "RGS7 WILD-TYPE" "RGS7 WILD-TYPE" 
    TCGA-50-5049     TCGA-50-5051     TCGA-50-5055     TCGA-50-5066 
  "RGS7 MUTATED"   "RGS7 MUTATED" "RGS7 WILD-TYPE" "RGS7 WILD-TYPE" 
    TCGA-50-5068     TCGA-50-5072     TCGA-50-5930     TCGA-50-5931 
"RGS7 WILD-TYPE" "RGS7 WILD-TYPE" "RGS7 WILD-TYPE" "RGS7 WILD-TYPE" 
    TCGA-50-5932     TCGA-50-5933     TCGA-50-5935     TCGA-50-5936 
"RGS7 WILD-TYPE" "RGS7 WILD-TYPE" "RGS7 WILD-TYPE" "RGS7 WILD-TYPE" 
    TCGA-50-5939     TCGA-50-5941     TCGA-50-5942     TCGA-50-5944 
"RGS7 WILD-TYPE" "RGS7 WILD-TYPE" "RGS7 WILD-TYPE" "RGS7 WILD-TYPE" 
    TCGA-50-5946     TCGA-50-6590     TCGA-50-6591     TCGA-50-6592 
"RGS7 WILD-TYPE"   "RGS7 MUTATED" "RGS7 WILD-TYPE" "RGS7 WILD-TYPE" 
    TCGA-50-6593     TCGA-50-6594     TCGA-50-6595     TCGA-50-6597 
"RGS7 WILD-TYPE"   "RGS7 MUTATED" "RGS7 WILD-TYPE" "RGS7 WILD-TYPE" 
    TCGA-55-1592     TCGA-55-1594     TCGA-55-1595     TCGA-55-1596 
"RGS7 WILD-TYPE" "RGS7 WILD-TYPE" "RGS7 WILD-TYPE" "RGS7 WILD-TYPE" 
    TCGA-55-5899     TCGA-55-6543     TCGA-55-6642     TCGA-55-6712 
  "RGS7 MUTATED" "RGS7 WILD-TYPE" "RGS7 WILD-TYPE" "RGS7 WILD-TYPE" 
    TCGA-64-1676     TCGA-64-1677     TCGA-64-1678     TCGA-64-1680 
"RGS7 WILD-TYPE" "RGS7 WILD-TYPE" "RGS7 WILD-TYPE" "RGS7 WILD-TYPE" 
    TCGA-64-5774     TCGA-64-5775     TCGA-64-5778     TCGA-64-5779 
"RGS7 WILD-TYPE" "RGS7 WILD-TYPE" "RGS7 WILD-TYPE" "RGS7 WILD-TYPE" 
    TCGA-64-5781     TCGA-64-5815     TCGA-67-3770     TCGA-67-3771 
"RGS7 WILD-TYPE" "RGS7 WILD-TYPE" "RGS7 WILD-TYPE" "RGS7 WILD-TYPE" 
    TCGA-67-3772     TCGA-67-3773     TCGA-67-3774     TCGA-67-6215 
"RGS7 WILD-TYPE" "RGS7 WILD-TYPE" "RGS7 WILD-TYPE" "RGS7 WILD-TYPE" 
    TCGA-67-6216     TCGA-67-6217     TCGA-71-6725     TCGA-73-4658 
"RGS7 WILD-TYPE" "RGS7 WILD-TYPE" "RGS7 WILD-TYPE" "RGS7 WILD-TYPE" 
    TCGA-73-4659     TCGA-73-4662     TCGA-73-4666     TCGA-73-4668 
"RGS7 WILD-TYPE" "RGS7 WILD-TYPE" "RGS7 WILD-TYPE" "RGS7 WILD-TYPE" 
    TCGA-73-4670     TCGA-73-4675     TCGA-73-4676     TCGA-73-4677 
"RGS7 WILD-TYPE" "RGS7 WILD-TYPE" "RGS7 WILD-TYPE" "RGS7 WILD-TYPE" 
    TCGA-91-6828     TCGA-91-6829     TCGA-91-6831     TCGA-91-6835 
"RGS7 WILD-TYPE" "RGS7 WILD-TYPE" "RGS7 WILD-TYPE" "RGS7 WILD-TYPE" 
    TCGA-91-6836 
  "RGS7 MUTATED" 
    TCGA-05-4249     TCGA-05-4250     TCGA-05-4382     TCGA-05-4384 
"RGS7 WILD-TYPE"   "RGS7 MUTATED"   "RGS7 MUTATED" "RGS7 WILD-TYPE" 
    TCGA-05-4390     TCGA-05-4396     TCGA-05-4397     TCGA-05-4398 
"RGS7 WILD-TYPE"   "RGS7 MUTATED" "RGS7 WILD-TYPE" "RGS7 WILD-TYPE" 
    TCGA-05-4402     TCGA-05-4405     TCGA-05-4415     TCGA-05-4417 
"RGS7 WILD-TYPE" "RGS7 WILD-TYPE" "RGS7 WILD-TYPE" "RGS7 WILD-TYPE" 
    TCGA-05-4418     TCGA-05-4420     TCGA-05-4424     TCGA-05-4426 
"RGS7 WILD-TYPE" "RGS7 WILD-TYPE"   "RGS7 MUTATED" "RGS7 WILD-TYPE" 
    TCGA-05-4427     TCGA-05-4430     TCGA-05-4432     TCGA-05-4433 
"RGS7 WILD-TYPE" "RGS7 WILD-TYPE" "RGS7 WILD-TYPE" "RGS7 WILD-TYPE" 
    TCGA-05-4434     TCGA-05-5420     TCGA-05-5423     TCGA-05-5425 
"RGS7 WILD-TYPE" "RGS7 WILD-TYPE" "RGS7 WILD-TYPE" "RGS7 WILD-TYPE" 
    TCGA-05-5429     TCGA-05-5715     TCGA-35-3615     TCGA-35-4122 
"RGS7 WILD-TYPE" "RGS7 WILD-TYPE" "RGS7 WILD-TYPE" "RGS7 WILD-TYPE" 
    TCGA-35-4123     TCGA-35-5375     TCGA-38-4625     TCGA-38-4626 
"RGS7 WILD-TYPE" "RGS7 WILD-TYPE" "RGS7 WILD-TYPE" "RGS7 WILD-TYPE" 
    TCGA-38-4627     TCGA-38-4628     TCGA-38-4629     TCGA-38-4630 
"RGS7 WILD-TYPE" "RGS7 WILD-TYPE" "RGS7 WILD-TYPE" "RGS7 WILD-TYPE" 
    TCGA-38-4631     TCGA-38-4632     TCGA-38-6178     TCGA-44-2655 
"RGS7 WILD-TYPE" "RGS7 WILD-TYPE" "RGS7 WILD-TYPE" "RGS7 WILD-TYPE" 
    TCGA-44-2656     TCGA-44-2657     TCGA-44-2659     TCGA-44-2661 
"RGS7 WILD-TYPE" "RGS7 WILD-TYPE" "RGS7 WILD-TYPE" "RGS7 WILD-TYPE" 
    TCGA-44-2662     TCGA-44-2665     TCGA-44-2666     TCGA-44-2668 
"RGS7 WILD-TYPE" "RGS7 WILD-TYPE" "RGS7 WILD-TYPE" "RGS7 WILD-TYPE" 
    TCGA-44-3396     TCGA-44-3398     TCGA-44-3918     TCGA-44-3919 
"RGS7 WILD-TYPE" "RGS7 WILD-TYPE" "RGS7 WILD-TYPE" "RGS7 WILD-TYPE" 
    TCGA-44-4112     TCGA-44-5643     TCGA-44-5645     TCGA-44-6144 
"RGS7 WILD-TYPE" "RGS7 WILD-TYPE" "RGS7 WILD-TYPE" "RGS7 WILD-TYPE" 
    TCGA-44-6145     TCGA-44-6146     TCGA-44-6147     TCGA-44-6148 
"RGS7 WILD-TYPE" "RGS7 WILD-TYPE" "RGS7 WILD-TYPE" "RGS7 WILD-TYPE" 
    TCGA-44-6774     TCGA-44-6775     TCGA-44-6776     TCGA-44-6777 
"RGS7 WILD-TYPE" "RGS7 WILD-TYPE" "RGS7 WILD-TYPE" "RGS7 WILD-TYPE" 
    TCGA-44-6778     TCGA-44-6779     TCGA-49-4486     TCGA-49-4487 
"RGS7 WILD-TYPE" "RGS7 WILD-TYPE" "RGS7 WILD-TYPE" "RGS7 WILD-TYPE" 
    TCGA-49-4488     TCGA-49-4490     TCGA-49-4494     TCGA-49-4501 
  "RGS7 MUTATED" "RGS7 WILD-TYPE" "RGS7 WILD-TYPE" "RGS7 WILD-TYPE" 
    TCGA-49-4505     TCGA-49-4506     TCGA-49-4507     TCGA-49-4510 
"RGS7 WILD-TYPE" "RGS7 WILD-TYPE" "RGS7 WILD-TYPE" "RGS7 WILD-TYPE" 
    TCGA-49-4512     TCGA-49-4514     TCGA-49-6742     TCGA-49-6743 
"RGS7 WILD-TYPE"   "RGS7 MUTATED" "RGS7 WILD-TYPE" "RGS7 WILD-TYPE" 
    TCGA-49-6744     TCGA-49-6745     TCGA-50-5044     TCGA-50-5045 
"RGS7 WILD-TYPE" "RGS7 WILD-TYPE" "RGS7 WILD-TYPE" "RGS7 WILD-TYPE" 
    TCGA-50-5049     TCGA-50-5051     TCGA-50-5055     TCGA-50-5066 
  "RGS7 MUTATED"   "RGS7 MUTATED" "RGS7 WILD-TYPE" "RGS7 WILD-TYPE" 
    TCGA-50-5068     TCGA-50-5072     TCGA-50-5930     TCGA-50-5931 
"RGS7 WILD-TYPE" "RGS7 WILD-TYPE" "RGS7 WILD-TYPE" "RGS7 WILD-TYPE" 
    TCGA-50-5932     TCGA-50-5933     TCGA-50-5935     TCGA-50-5936 
"RGS7 WILD-TYPE" "RGS7 WILD-TYPE" "RGS7 WILD-TYPE" "RGS7 WILD-TYPE" 
    TCGA-50-5939     TCGA-50-5941     TCGA-50-5942     TCGA-50-5944 
"RGS7 WILD-TYPE" "RGS7 WILD-TYPE" "RGS7 WILD-TYPE" "RGS7 WILD-TYPE" 
    TCGA-50-5946     TCGA-50-6590     TCGA-50-6591     TCGA-50-6592 
"RGS7 WILD-TYPE"   "RGS7 MUTATED" "RGS7 WILD-TYPE" "RGS7 WILD-TYPE" 
    TCGA-50-6593     TCGA-50-6594     TCGA-50-6595     TCGA-50-6597 
"RGS7 WILD-TYPE"   "RGS7 MUTATED" "RGS7 WILD-TYPE" "RGS7 WILD-TYPE" 
    TCGA-55-1592     TCGA-55-1594     TCGA-55-1595     TCGA-55-1596 
"RGS7 WILD-TYPE" "RGS7 WILD-TYPE" "RGS7 WILD-TYPE" "RGS7 WILD-TYPE" 
    TCGA-55-5899     TCGA-55-6543     TCGA-55-6642     TCGA-55-6712 
  "RGS7 MUTATED" "RGS7 WILD-TYPE" "RGS7 WILD-TYPE" "RGS7 WILD-TYPE" 
    TCGA-64-1676     TCGA-64-1677     TCGA-64-1678     TCGA-64-1680 
"RGS7 WILD-TYPE" "RGS7 WILD-TYPE" "RGS7 WILD-TYPE" "RGS7 WILD-TYPE" 
    TCGA-64-5774     TCGA-64-5775     TCGA-64-5778     TCGA-64-5779 
"RGS7 WILD-TYPE" "RGS7 WILD-TYPE" "RGS7 WILD-TYPE" "RGS7 WILD-TYPE" 
    TCGA-64-5781     TCGA-64-5815     TCGA-67-3770     TCGA-67-3771 
"RGS7 WILD-TYPE" "RGS7 WILD-TYPE" "RGS7 WILD-TYPE" "RGS7 WILD-TYPE" 
    TCGA-67-3772     TCGA-67-3773     TCGA-67-3774     TCGA-67-6215 
"RGS7 WILD-TYPE" "RGS7 WILD-TYPE" "RGS7 WILD-TYPE" "RGS7 WILD-TYPE" 
    TCGA-67-6216     TCGA-67-6217     TCGA-71-6725     TCGA-73-4658 
"RGS7 WILD-TYPE" "RGS7 WILD-TYPE" "RGS7 WILD-TYPE" "RGS7 WILD-TYPE" 
    TCGA-73-4659     TCGA-73-4662     TCGA-73-4666     TCGA-73-4668 
"RGS7 WILD-TYPE" "RGS7 WILD-TYPE" "RGS7 WILD-TYPE" "RGS7 WILD-TYPE" 
    TCGA-73-4670     TCGA-73-4675     TCGA-73-4676     TCGA-73-4677 
"RGS7 WILD-TYPE" "RGS7 WILD-TYPE" "RGS7 WILD-TYPE" "RGS7 WILD-TYPE" 
    TCGA-91-6828     TCGA-91-6829     TCGA-91-6831     TCGA-91-6835 
"RGS7 WILD-TYPE" "RGS7 WILD-TYPE" "RGS7 WILD-TYPE" "RGS7 WILD-TYPE" 
    TCGA-91-6836 
  "RGS7 MUTATED" 
[1] "hr=" "1.2"
D200V2, continuous
D200V3, binary
[1] "tbl2"
                cls
clus             [,1] [,2]
  RGS7 MUTATED      7    5
  RGS7 WILD-TYPE   86   74
        clus
vv       RGS7 MUTATED RGS7 WILD-TYPE
  FEMALE            7             86
  MALE              5             74
D200V4, continuous
D200V5, multiclass
D200V6, multiclass
    clus
vv   RGS7 MUTATED RGS7 WILD-TYPE
  T1            3             38
  T2            5            103
  T3            3             11
  T4            1              7
D200V7, multiclass
       clus
vv      RGS7 MUTATED RGS7 WILD-TYPE
  N0               7             88
  N1               3             34
  N2+N3            2             33
D200V8, multiclass
    clus
vv   RGS7 MUTATED RGS7 WILD-TYPE
  M0           10            127
  M1            0              9
  MX            2             20
D200V9, multiclass
     clus
vv    RGS7 MUTATED RGS7 WILD-TYPE
  I              7             81
  II             1             32
  III            4             35
  IV             0              9
D200V10, binary
[1] "tbl2"
                cls
clus             [,1] [,2]
  RGS7 MUTATED      2   10
  RGS7 WILD-TYPE   14  146
     clus
vv    RGS7 MUTATED RGS7 WILD-TYPE
  NO             2             14
  YES           10            146
D200V11, continuous
D200V12, continuous
D200V13, multiclass
                                             clus
vv                                            RGS7 MUTATED RGS7 WILD-TYPE
  CURRENT REFORMED SMOKER FOR < OR = 15 YEARS            6             56
  CURRENT REFORMED SMOKER FOR > 15 YEARS                 3             43
  CURRENT SMOKER                                         2             26
  LIFELONG NON-SMOKER                                    0             24
D200V14, continuous

Clustering(201) Variable = SVOP MUTATION ANALYSIS
D201V1, survival
                sevent
clus2             0  1
  SVOP MUTATED    4  2
  SVOP WILD-TYPE 95 48
  SVOP MUTATED SVOP WILD-TYPE 
             6            143 
  SVOP MUTATED SVOP WILD-TYPE 
             2             48 
$`SVOP MUTATED`
TCGA-05-4398 TCGA-05-4418 TCGA-05-4427 TCGA-35-5375 TCGA-49-4487 TCGA-55-6712 
       47.05         8.98        26.01         8.68        28.11         0.79 

$`SVOP WILD-TYPE`
TCGA-05-4249 TCGA-05-4250 TCGA-05-4382 TCGA-05-4384 TCGA-05-4390 TCGA-05-4396 
       38.07         3.98        19.92        14.01        37.02         9.96 
TCGA-05-4397 TCGA-05-4402 TCGA-05-4405 TCGA-05-4415 TCGA-05-4417 TCGA-05-4420 
       24.03         8.02        20.05         2.96        14.93        29.95 
TCGA-05-4424 TCGA-05-4426 TCGA-05-4430 TCGA-05-4432 TCGA-05-4433 TCGA-05-4434 
       30.02        26.01        25.02        25.02        24.00        15.02 
TCGA-05-5420 TCGA-05-5423 TCGA-05-5425 TCGA-05-5429 TCGA-05-5715 TCGA-35-3615 
        1.02         4.96         2.96         0.99         2.04         0.46 
TCGA-35-4122 TCGA-35-4123 TCGA-38-4625 TCGA-38-4626 TCGA-38-4627 TCGA-38-4628 
        7.36         5.95        47.61        85.32        37.71        49.02 
TCGA-38-4629 TCGA-38-4630 TCGA-38-4631 TCGA-38-4632 TCGA-38-6178 TCGA-44-2655 
       28.37        35.28        11.64        44.61         5.19        18.87 
TCGA-44-2656 TCGA-44-2657 TCGA-44-2659 TCGA-44-2661 TCGA-44-2662 TCGA-44-2665 
       19.10        13.15        17.39         3.39        15.78        13.15 
TCGA-44-2666 TCGA-44-2668 TCGA-44-3396 TCGA-44-3398 TCGA-44-3918 TCGA-44-3919 
        3.19         8.09        10.22         8.32         6.44         6.21 
TCGA-44-4112 TCGA-44-5643 TCGA-44-5645 TCGA-44-6144 TCGA-44-6145 TCGA-44-6146 
        4.60         3.48         6.84         0.30         3.35         9.93 
TCGA-44-6147 TCGA-44-6148 TCGA-44-6774 TCGA-44-6775 TCGA-44-6776 TCGA-44-6777 
        7.76         3.12         5.42         2.70        63.72        32.45 
TCGA-44-6778 TCGA-44-6779 TCGA-49-4486 TCGA-49-4488 TCGA-49-4490 TCGA-49-4494 
       36.49        16.41        76.21        28.57        12.66        35.54 
TCGA-49-4501 TCGA-49-4505 TCGA-49-4506 TCGA-49-4507 TCGA-49-4510 TCGA-49-4512 
       46.72        14.07        32.84         8.81        29.46        29.75 
TCGA-49-4514 TCGA-49-6742 TCGA-49-6743 TCGA-49-6744 TCGA-49-6745 TCGA-50-5044 
       43.20        15.02        12.13        12.99         4.93        20.48 
TCGA-50-5045 TCGA-50-5049 TCGA-50-5051 TCGA-50-5055 TCGA-50-5066 TCGA-50-5068 
       71.47        48.82        14.96        25.81         9.76        49.28 
TCGA-50-5072 TCGA-50-5930 TCGA-50-5931 TCGA-50-5932 TCGA-50-5933 TCGA-50-5935 
        8.05         9.27         8.78        35.87        77.88        21.47 
TCGA-50-5936 TCGA-50-5939 TCGA-50-5941 TCGA-50-5942 TCGA-50-5944 TCGA-50-5946 
        8.45        15.12         9.37         4.44        12.26        11.47 
TCGA-50-6590 TCGA-50-6591 TCGA-50-6592 TCGA-50-6593 TCGA-50-6594 TCGA-50-6595 
       42.31         3.88        25.51        11.05        12.16         6.21 
TCGA-50-6597 TCGA-55-1592 TCGA-55-1594 TCGA-55-1595 TCGA-55-1596 TCGA-55-5899 
       33.37        23.05        38.73        48.62        45.17         2.86 
TCGA-55-6543 TCGA-55-6642 TCGA-64-1676 TCGA-64-1677 TCGA-64-1678 TCGA-64-1680 
        0.07        32.61        56.81        20.65        39.09        37.02 
TCGA-64-5774 TCGA-64-5775 TCGA-64-5778 TCGA-64-5779 TCGA-64-5781 TCGA-64-5815 
       83.84         0.10        30.44        16.67        39.52         7.33 
TCGA-67-3770 TCGA-67-3771 TCGA-67-3772 TCGA-67-3773 TCGA-67-3774 TCGA-67-6215 
        0.99         1.97         0.59         2.04         0.59         0.89 
TCGA-67-6216 TCGA-67-6217 TCGA-71-6725 TCGA-73-4658 TCGA-73-4659 TCGA-73-4662 
        0.69        13.87         2.01        52.57        23.38        29.95 
TCGA-73-4666 TCGA-73-4668 TCGA-73-4670 TCGA-73-4675 TCGA-73-4676 TCGA-73-4677 
       20.28        15.35         0.46         1.32         4.01         1.25 
TCGA-91-6828 TCGA-91-6829 TCGA-91-6831 TCGA-91-6835 TCGA-91-6836 
        1.22        41.33         1.28         1.15         0.36 

  SVOP MUTATED SVOP WILD-TYPE 
          0.79           0.07 
  SVOP MUTATED SVOP WILD-TYPE 
         47.05          85.32 
  SVOP MUTATED SVOP WILD-TYPE 
        17.495         13.870 
[1] "0.8 - 47.0 (17.5)" "0.1 - 85.3 (13.9)"
    TCGA-05-4249     TCGA-05-4250     TCGA-05-4382     TCGA-05-4384 
"SVOP WILD-TYPE" "SVOP WILD-TYPE" "SVOP WILD-TYPE" "SVOP WILD-TYPE" 
    TCGA-05-4390     TCGA-05-4396     TCGA-05-4397     TCGA-05-4398 
"SVOP WILD-TYPE" "SVOP WILD-TYPE" "SVOP WILD-TYPE"   "SVOP MUTATED" 
    TCGA-05-4402     TCGA-05-4405     TCGA-05-4415     TCGA-05-4417 
"SVOP WILD-TYPE" "SVOP WILD-TYPE" "SVOP WILD-TYPE" "SVOP WILD-TYPE" 
    TCGA-05-4418     TCGA-05-4420     TCGA-05-4424     TCGA-05-4426 
  "SVOP MUTATED" "SVOP WILD-TYPE" "SVOP WILD-TYPE" "SVOP WILD-TYPE" 
    TCGA-05-4427     TCGA-05-4430     TCGA-05-4432     TCGA-05-4433 
  "SVOP MUTATED" "SVOP WILD-TYPE" "SVOP WILD-TYPE" "SVOP WILD-TYPE" 
    TCGA-05-4434     TCGA-05-5420     TCGA-05-5423     TCGA-05-5425 
"SVOP WILD-TYPE" "SVOP WILD-TYPE" "SVOP WILD-TYPE" "SVOP WILD-TYPE" 
    TCGA-05-5429     TCGA-05-5715     TCGA-35-3615     TCGA-35-4122 
"SVOP WILD-TYPE" "SVOP WILD-TYPE" "SVOP WILD-TYPE" "SVOP WILD-TYPE" 
    TCGA-35-4123     TCGA-35-5375     TCGA-38-4625     TCGA-38-4626 
"SVOP WILD-TYPE"   "SVOP MUTATED" "SVOP WILD-TYPE" "SVOP WILD-TYPE" 
    TCGA-38-4627     TCGA-38-4628     TCGA-38-4629     TCGA-38-4630 
"SVOP WILD-TYPE" "SVOP WILD-TYPE" "SVOP WILD-TYPE" "SVOP WILD-TYPE" 
    TCGA-38-4631     TCGA-38-4632     TCGA-38-6178     TCGA-44-2655 
"SVOP WILD-TYPE" "SVOP WILD-TYPE" "SVOP WILD-TYPE" "SVOP WILD-TYPE" 
    TCGA-44-2656     TCGA-44-2657     TCGA-44-2659     TCGA-44-2661 
"SVOP WILD-TYPE" "SVOP WILD-TYPE" "SVOP WILD-TYPE" "SVOP WILD-TYPE" 
    TCGA-44-2662     TCGA-44-2665     TCGA-44-2666     TCGA-44-2668 
"SVOP WILD-TYPE" "SVOP WILD-TYPE" "SVOP WILD-TYPE" "SVOP WILD-TYPE" 
    TCGA-44-3396     TCGA-44-3398     TCGA-44-3918     TCGA-44-3919 
"SVOP WILD-TYPE" "SVOP WILD-TYPE" "SVOP WILD-TYPE" "SVOP WILD-TYPE" 
    TCGA-44-4112     TCGA-44-5643     TCGA-44-5645     TCGA-44-6144 
"SVOP WILD-TYPE" "SVOP WILD-TYPE" "SVOP WILD-TYPE" "SVOP WILD-TYPE" 
    TCGA-44-6145     TCGA-44-6146     TCGA-44-6147     TCGA-44-6148 
"SVOP WILD-TYPE" "SVOP WILD-TYPE" "SVOP WILD-TYPE" "SVOP WILD-TYPE" 
    TCGA-44-6774     TCGA-44-6775     TCGA-44-6776     TCGA-44-6777 
"SVOP WILD-TYPE" "SVOP WILD-TYPE" "SVOP WILD-TYPE" "SVOP WILD-TYPE" 
    TCGA-44-6778     TCGA-44-6779     TCGA-49-4486     TCGA-49-4487 
"SVOP WILD-TYPE" "SVOP WILD-TYPE" "SVOP WILD-TYPE"   "SVOP MUTATED" 
    TCGA-49-4488     TCGA-49-4490     TCGA-49-4494     TCGA-49-4501 
"SVOP WILD-TYPE" "SVOP WILD-TYPE" "SVOP WILD-TYPE" "SVOP WILD-TYPE" 
    TCGA-49-4505     TCGA-49-4506     TCGA-49-4507     TCGA-49-4510 
"SVOP WILD-TYPE" "SVOP WILD-TYPE" "SVOP WILD-TYPE" "SVOP WILD-TYPE" 
    TCGA-49-4512     TCGA-49-4514     TCGA-49-6742     TCGA-49-6743 
"SVOP WILD-TYPE" "SVOP WILD-TYPE" "SVOP WILD-TYPE" "SVOP WILD-TYPE" 
    TCGA-49-6744     TCGA-49-6745     TCGA-50-5044     TCGA-50-5045 
"SVOP WILD-TYPE" "SVOP WILD-TYPE" "SVOP WILD-TYPE" "SVOP WILD-TYPE" 
    TCGA-50-5049     TCGA-50-5051     TCGA-50-5055     TCGA-50-5066 
"SVOP WILD-TYPE" "SVOP WILD-TYPE" "SVOP WILD-TYPE" "SVOP WILD-TYPE" 
    TCGA-50-5068     TCGA-50-5072     TCGA-50-5930     TCGA-50-5931 
"SVOP WILD-TYPE" "SVOP WILD-TYPE" "SVOP WILD-TYPE" "SVOP WILD-TYPE" 
    TCGA-50-5932     TCGA-50-5933     TCGA-50-5935     TCGA-50-5936 
"SVOP WILD-TYPE" "SVOP WILD-TYPE" "SVOP WILD-TYPE" "SVOP WILD-TYPE" 
    TCGA-50-5939     TCGA-50-5941     TCGA-50-5942     TCGA-50-5944 
"SVOP WILD-TYPE" "SVOP WILD-TYPE" "SVOP WILD-TYPE" "SVOP WILD-TYPE" 
    TCGA-50-5946     TCGA-50-6590     TCGA-50-6591     TCGA-50-6592 
"SVOP WILD-TYPE" "SVOP WILD-TYPE" "SVOP WILD-TYPE" "SVOP WILD-TYPE" 
    TCGA-50-6593     TCGA-50-6594     TCGA-50-6595     TCGA-50-6597 
"SVOP WILD-TYPE" "SVOP WILD-TYPE" "SVOP WILD-TYPE" "SVOP WILD-TYPE" 
    TCGA-55-1592     TCGA-55-1594     TCGA-55-1595     TCGA-55-1596 
"SVOP WILD-TYPE" "SVOP WILD-TYPE" "SVOP WILD-TYPE" "SVOP WILD-TYPE" 
    TCGA-55-5899     TCGA-55-6543     TCGA-55-6642     TCGA-55-6712 
"SVOP WILD-TYPE" "SVOP WILD-TYPE" "SVOP WILD-TYPE"   "SVOP MUTATED" 
    TCGA-64-1676     TCGA-64-1677     TCGA-64-1678     TCGA-64-1680 
"SVOP WILD-TYPE" "SVOP WILD-TYPE" "SVOP WILD-TYPE" "SVOP WILD-TYPE" 
    TCGA-64-5774     TCGA-64-5775     TCGA-64-5778     TCGA-64-5779 
"SVOP WILD-TYPE" "SVOP WILD-TYPE" "SVOP WILD-TYPE" "SVOP WILD-TYPE" 
    TCGA-64-5781     TCGA-64-5815     TCGA-67-3770     TCGA-67-3771 
"SVOP WILD-TYPE" "SVOP WILD-TYPE" "SVOP WILD-TYPE" "SVOP WILD-TYPE" 
    TCGA-67-3772     TCGA-67-3773     TCGA-67-3774     TCGA-67-6215 
"SVOP WILD-TYPE" "SVOP WILD-TYPE" "SVOP WILD-TYPE" "SVOP WILD-TYPE" 
    TCGA-67-6216     TCGA-67-6217     TCGA-71-6725     TCGA-73-4658 
"SVOP WILD-TYPE" "SVOP WILD-TYPE" "SVOP WILD-TYPE" "SVOP WILD-TYPE" 
    TCGA-73-4659     TCGA-73-4662     TCGA-73-4666     TCGA-73-4668 
"SVOP WILD-TYPE" "SVOP WILD-TYPE" "SVOP WILD-TYPE" "SVOP WILD-TYPE" 
    TCGA-73-4670     TCGA-73-4675     TCGA-73-4676     TCGA-73-4677 
"SVOP WILD-TYPE" "SVOP WILD-TYPE" "SVOP WILD-TYPE" "SVOP WILD-TYPE" 
    TCGA-91-6828     TCGA-91-6829     TCGA-91-6831     TCGA-91-6835 
"SVOP WILD-TYPE" "SVOP WILD-TYPE" "SVOP WILD-TYPE" "SVOP WILD-TYPE" 
    TCGA-91-6836 
"SVOP WILD-TYPE" 
    TCGA-05-4249     TCGA-05-4250     TCGA-05-4382     TCGA-05-4384 
"SVOP WILD-TYPE" "SVOP WILD-TYPE" "SVOP WILD-TYPE" "SVOP WILD-TYPE" 
    TCGA-05-4390     TCGA-05-4396     TCGA-05-4397     TCGA-05-4398 
"SVOP WILD-TYPE" "SVOP WILD-TYPE" "SVOP WILD-TYPE"   "SVOP MUTATED" 
    TCGA-05-4402     TCGA-05-4405     TCGA-05-4415     TCGA-05-4417 
"SVOP WILD-TYPE" "SVOP WILD-TYPE" "SVOP WILD-TYPE" "SVOP WILD-TYPE" 
    TCGA-05-4418     TCGA-05-4420     TCGA-05-4424     TCGA-05-4426 
  "SVOP MUTATED" "SVOP WILD-TYPE" "SVOP WILD-TYPE" "SVOP WILD-TYPE" 
    TCGA-05-4427     TCGA-05-4430     TCGA-05-4432     TCGA-05-4433 
  "SVOP MUTATED" "SVOP WILD-TYPE" "SVOP WILD-TYPE" "SVOP WILD-TYPE" 
    TCGA-05-4434     TCGA-05-5420     TCGA-05-5423     TCGA-05-5425 
"SVOP WILD-TYPE" "SVOP WILD-TYPE" "SVOP WILD-TYPE" "SVOP WILD-TYPE" 
    TCGA-05-5429     TCGA-05-5715     TCGA-35-3615     TCGA-35-4122 
"SVOP WILD-TYPE" "SVOP WILD-TYPE" "SVOP WILD-TYPE" "SVOP WILD-TYPE" 
    TCGA-35-4123     TCGA-35-5375     TCGA-38-4625     TCGA-38-4626 
"SVOP WILD-TYPE"   "SVOP MUTATED" "SVOP WILD-TYPE" "SVOP WILD-TYPE" 
    TCGA-38-4627     TCGA-38-4628     TCGA-38-4629     TCGA-38-4630 
"SVOP WILD-TYPE" "SVOP WILD-TYPE" "SVOP WILD-TYPE" "SVOP WILD-TYPE" 
    TCGA-38-4631     TCGA-38-4632     TCGA-38-6178     TCGA-44-2655 
"SVOP WILD-TYPE" "SVOP WILD-TYPE" "SVOP WILD-TYPE" "SVOP WILD-TYPE" 
    TCGA-44-2656     TCGA-44-2657     TCGA-44-2659     TCGA-44-2661 
"SVOP WILD-TYPE" "SVOP WILD-TYPE" "SVOP WILD-TYPE" "SVOP WILD-TYPE" 
    TCGA-44-2662     TCGA-44-2665     TCGA-44-2666     TCGA-44-2668 
"SVOP WILD-TYPE" "SVOP WILD-TYPE" "SVOP WILD-TYPE" "SVOP WILD-TYPE" 
    TCGA-44-3396     TCGA-44-3398     TCGA-44-3918     TCGA-44-3919 
"SVOP WILD-TYPE" "SVOP WILD-TYPE" "SVOP WILD-TYPE" "SVOP WILD-TYPE" 
    TCGA-44-4112     TCGA-44-5643     TCGA-44-5645     TCGA-44-6144 
"SVOP WILD-TYPE" "SVOP WILD-TYPE" "SVOP WILD-TYPE" "SVOP WILD-TYPE" 
    TCGA-44-6145     TCGA-44-6146     TCGA-44-6147     TCGA-44-6148 
"SVOP WILD-TYPE" "SVOP WILD-TYPE" "SVOP WILD-TYPE" "SVOP WILD-TYPE" 
    TCGA-44-6774     TCGA-44-6775     TCGA-44-6776     TCGA-44-6777 
"SVOP WILD-TYPE" "SVOP WILD-TYPE" "SVOP WILD-TYPE" "SVOP WILD-TYPE" 
    TCGA-44-6778     TCGA-44-6779     TCGA-49-4486     TCGA-49-4487 
"SVOP WILD-TYPE" "SVOP WILD-TYPE" "SVOP WILD-TYPE"   "SVOP MUTATED" 
    TCGA-49-4488     TCGA-49-4490     TCGA-49-4494     TCGA-49-4501 
"SVOP WILD-TYPE" "SVOP WILD-TYPE" "SVOP WILD-TYPE" "SVOP WILD-TYPE" 
    TCGA-49-4505     TCGA-49-4506     TCGA-49-4507     TCGA-49-4510 
"SVOP WILD-TYPE" "SVOP WILD-TYPE" "SVOP WILD-TYPE" "SVOP WILD-TYPE" 
    TCGA-49-4512     TCGA-49-4514     TCGA-49-6742     TCGA-49-6743 
"SVOP WILD-TYPE" "SVOP WILD-TYPE" "SVOP WILD-TYPE" "SVOP WILD-TYPE" 
    TCGA-49-6744     TCGA-49-6745     TCGA-50-5044     TCGA-50-5045 
"SVOP WILD-TYPE" "SVOP WILD-TYPE" "SVOP WILD-TYPE" "SVOP WILD-TYPE" 
    TCGA-50-5049     TCGA-50-5051     TCGA-50-5055     TCGA-50-5066 
"SVOP WILD-TYPE" "SVOP WILD-TYPE" "SVOP WILD-TYPE" "SVOP WILD-TYPE" 
    TCGA-50-5068     TCGA-50-5072     TCGA-50-5930     TCGA-50-5931 
"SVOP WILD-TYPE" "SVOP WILD-TYPE" "SVOP WILD-TYPE" "SVOP WILD-TYPE" 
    TCGA-50-5932     TCGA-50-5933     TCGA-50-5935     TCGA-50-5936 
"SVOP WILD-TYPE" "SVOP WILD-TYPE" "SVOP WILD-TYPE" "SVOP WILD-TYPE" 
    TCGA-50-5939     TCGA-50-5941     TCGA-50-5942     TCGA-50-5944 
"SVOP WILD-TYPE" "SVOP WILD-TYPE" "SVOP WILD-TYPE" "SVOP WILD-TYPE" 
    TCGA-50-5946     TCGA-50-6590     TCGA-50-6591     TCGA-50-6592 
"SVOP WILD-TYPE" "SVOP WILD-TYPE" "SVOP WILD-TYPE" "SVOP WILD-TYPE" 
    TCGA-50-6593     TCGA-50-6594     TCGA-50-6595     TCGA-50-6597 
"SVOP WILD-TYPE" "SVOP WILD-TYPE" "SVOP WILD-TYPE" "SVOP WILD-TYPE" 
    TCGA-55-1592     TCGA-55-1594     TCGA-55-1595     TCGA-55-1596 
"SVOP WILD-TYPE" "SVOP WILD-TYPE" "SVOP WILD-TYPE" "SVOP WILD-TYPE" 
    TCGA-55-5899     TCGA-55-6543     TCGA-55-6642     TCGA-55-6712 
"SVOP WILD-TYPE" "SVOP WILD-TYPE" "SVOP WILD-TYPE"   "SVOP MUTATED" 
    TCGA-64-1676     TCGA-64-1677     TCGA-64-1678     TCGA-64-1680 
"SVOP WILD-TYPE" "SVOP WILD-TYPE" "SVOP WILD-TYPE" "SVOP WILD-TYPE" 
    TCGA-64-5774     TCGA-64-5775     TCGA-64-5778     TCGA-64-5779 
"SVOP WILD-TYPE" "SVOP WILD-TYPE" "SVOP WILD-TYPE" "SVOP WILD-TYPE" 
    TCGA-64-5781     TCGA-64-5815     TCGA-67-3770     TCGA-67-3771 
"SVOP WILD-TYPE" "SVOP WILD-TYPE" "SVOP WILD-TYPE" "SVOP WILD-TYPE" 
    TCGA-67-3772     TCGA-67-3773     TCGA-67-3774     TCGA-67-6215 
"SVOP WILD-TYPE" "SVOP WILD-TYPE" "SVOP WILD-TYPE" "SVOP WILD-TYPE" 
    TCGA-67-6216     TCGA-67-6217     TCGA-71-6725     TCGA-73-4658 
"SVOP WILD-TYPE" "SVOP WILD-TYPE" "SVOP WILD-TYPE" "SVOP WILD-TYPE" 
    TCGA-73-4659     TCGA-73-4662     TCGA-73-4666     TCGA-73-4668 
"SVOP WILD-TYPE" "SVOP WILD-TYPE" "SVOP WILD-TYPE" "SVOP WILD-TYPE" 
    TCGA-73-4670     TCGA-73-4675     TCGA-73-4676     TCGA-73-4677 
"SVOP WILD-TYPE" "SVOP WILD-TYPE" "SVOP WILD-TYPE" "SVOP WILD-TYPE" 
    TCGA-91-6828     TCGA-91-6829     TCGA-91-6831     TCGA-91-6835 
"SVOP WILD-TYPE" "SVOP WILD-TYPE" "SVOP WILD-TYPE" "SVOP WILD-TYPE" 
    TCGA-91-6836 
"SVOP WILD-TYPE" 
    TCGA-05-4249     TCGA-05-4250     TCGA-05-4382     TCGA-05-4384 
"SVOP WILD-TYPE" "SVOP WILD-TYPE" "SVOP WILD-TYPE" "SVOP WILD-TYPE" 
    TCGA-05-4390     TCGA-05-4396     TCGA-05-4397     TCGA-05-4398 
"SVOP WILD-TYPE" "SVOP WILD-TYPE" "SVOP WILD-TYPE"   "SVOP MUTATED" 
    TCGA-05-4402     TCGA-05-4405     TCGA-05-4415     TCGA-05-4417 
"SVOP WILD-TYPE" "SVOP WILD-TYPE" "SVOP WILD-TYPE" "SVOP WILD-TYPE" 
    TCGA-05-4418     TCGA-05-4420     TCGA-05-4424     TCGA-05-4426 
  "SVOP MUTATED" "SVOP WILD-TYPE" "SVOP WILD-TYPE" "SVOP WILD-TYPE" 
    TCGA-05-4427     TCGA-05-4430     TCGA-05-4432     TCGA-05-4433 
  "SVOP MUTATED" "SVOP WILD-TYPE" "SVOP WILD-TYPE" "SVOP WILD-TYPE" 
    TCGA-05-4434     TCGA-05-5420     TCGA-05-5423     TCGA-05-5425 
"SVOP WILD-TYPE" "SVOP WILD-TYPE" "SVOP WILD-TYPE" "SVOP WILD-TYPE" 
    TCGA-05-5429     TCGA-05-5715     TCGA-35-3615     TCGA-35-4122 
"SVOP WILD-TYPE" "SVOP WILD-TYPE" "SVOP WILD-TYPE" "SVOP WILD-TYPE" 
    TCGA-35-4123     TCGA-35-5375     TCGA-38-4625     TCGA-38-4626 
"SVOP WILD-TYPE"   "SVOP MUTATED" "SVOP WILD-TYPE" "SVOP WILD-TYPE" 
    TCGA-38-4627     TCGA-38-4628     TCGA-38-4629     TCGA-38-4630 
"SVOP WILD-TYPE" "SVOP WILD-TYPE" "SVOP WILD-TYPE" "SVOP WILD-TYPE" 
    TCGA-38-4631     TCGA-38-4632     TCGA-38-6178     TCGA-44-2655 
"SVOP WILD-TYPE" "SVOP WILD-TYPE" "SVOP WILD-TYPE" "SVOP WILD-TYPE" 
    TCGA-44-2656     TCGA-44-2657     TCGA-44-2659     TCGA-44-2661 
"SVOP WILD-TYPE" "SVOP WILD-TYPE" "SVOP WILD-TYPE" "SVOP WILD-TYPE" 
    TCGA-44-2662     TCGA-44-2665     TCGA-44-2666     TCGA-44-2668 
"SVOP WILD-TYPE" "SVOP WILD-TYPE" "SVOP WILD-TYPE" "SVOP WILD-TYPE" 
    TCGA-44-3396     TCGA-44-3398     TCGA-44-3918     TCGA-44-3919 
"SVOP WILD-TYPE" "SVOP WILD-TYPE" "SVOP WILD-TYPE" "SVOP WILD-TYPE" 
    TCGA-44-4112     TCGA-44-5643     TCGA-44-5645     TCGA-44-6144 
"SVOP WILD-TYPE" "SVOP WILD-TYPE" "SVOP WILD-TYPE" "SVOP WILD-TYPE" 
    TCGA-44-6145     TCGA-44-6146     TCGA-44-6147     TCGA-44-6148 
"SVOP WILD-TYPE" "SVOP WILD-TYPE" "SVOP WILD-TYPE" "SVOP WILD-TYPE" 
    TCGA-44-6774     TCGA-44-6775     TCGA-44-6776     TCGA-44-6777 
"SVOP WILD-TYPE" "SVOP WILD-TYPE" "SVOP WILD-TYPE" "SVOP WILD-TYPE" 
    TCGA-44-6778     TCGA-44-6779     TCGA-49-4486     TCGA-49-4487 
"SVOP WILD-TYPE" "SVOP WILD-TYPE" "SVOP WILD-TYPE"   "SVOP MUTATED" 
    TCGA-49-4488     TCGA-49-4490     TCGA-49-4494     TCGA-49-4501 
"SVOP WILD-TYPE" "SVOP WILD-TYPE" "SVOP WILD-TYPE" "SVOP WILD-TYPE" 
    TCGA-49-4505     TCGA-49-4506     TCGA-49-4507     TCGA-49-4510 
"SVOP WILD-TYPE" "SVOP WILD-TYPE" "SVOP WILD-TYPE" "SVOP WILD-TYPE" 
    TCGA-49-4512     TCGA-49-4514     TCGA-49-6742     TCGA-49-6743 
"SVOP WILD-TYPE" "SVOP WILD-TYPE" "SVOP WILD-TYPE" "SVOP WILD-TYPE" 
    TCGA-49-6744     TCGA-49-6745     TCGA-50-5044     TCGA-50-5045 
"SVOP WILD-TYPE" "SVOP WILD-TYPE" "SVOP WILD-TYPE" "SVOP WILD-TYPE" 
    TCGA-50-5049     TCGA-50-5051     TCGA-50-5055     TCGA-50-5066 
"SVOP WILD-TYPE" "SVOP WILD-TYPE" "SVOP WILD-TYPE" "SVOP WILD-TYPE" 
    TCGA-50-5068     TCGA-50-5072     TCGA-50-5930     TCGA-50-5931 
"SVOP WILD-TYPE" "SVOP WILD-TYPE" "SVOP WILD-TYPE" "SVOP WILD-TYPE" 
    TCGA-50-5932     TCGA-50-5933     TCGA-50-5935     TCGA-50-5936 
"SVOP WILD-TYPE" "SVOP WILD-TYPE" "SVOP WILD-TYPE" "SVOP WILD-TYPE" 
    TCGA-50-5939     TCGA-50-5941     TCGA-50-5942     TCGA-50-5944 
"SVOP WILD-TYPE" "SVOP WILD-TYPE" "SVOP WILD-TYPE" "SVOP WILD-TYPE" 
    TCGA-50-5946     TCGA-50-6590     TCGA-50-6591     TCGA-50-6592 
"SVOP WILD-TYPE" "SVOP WILD-TYPE" "SVOP WILD-TYPE" "SVOP WILD-TYPE" 
    TCGA-50-6593     TCGA-50-6594     TCGA-50-6595     TCGA-50-6597 
"SVOP WILD-TYPE" "SVOP WILD-TYPE" "SVOP WILD-TYPE" "SVOP WILD-TYPE" 
    TCGA-55-1592     TCGA-55-1594     TCGA-55-1595     TCGA-55-1596 
"SVOP WILD-TYPE" "SVOP WILD-TYPE" "SVOP WILD-TYPE" "SVOP WILD-TYPE" 
    TCGA-55-5899     TCGA-55-6543     TCGA-55-6642     TCGA-55-6712 
"SVOP WILD-TYPE" "SVOP WILD-TYPE" "SVOP WILD-TYPE"   "SVOP MUTATED" 
    TCGA-64-1676     TCGA-64-1677     TCGA-64-1678     TCGA-64-1680 
"SVOP WILD-TYPE" "SVOP WILD-TYPE" "SVOP WILD-TYPE" "SVOP WILD-TYPE" 
    TCGA-64-5774     TCGA-64-5775     TCGA-64-5778     TCGA-64-5779 
"SVOP WILD-TYPE" "SVOP WILD-TYPE" "SVOP WILD-TYPE" "SVOP WILD-TYPE" 
    TCGA-64-5781     TCGA-64-5815     TCGA-67-3770     TCGA-67-3771 
"SVOP WILD-TYPE" "SVOP WILD-TYPE" "SVOP WILD-TYPE" "SVOP WILD-TYPE" 
    TCGA-67-3772     TCGA-67-3773     TCGA-67-3774     TCGA-67-6215 
"SVOP WILD-TYPE" "SVOP WILD-TYPE" "SVOP WILD-TYPE" "SVOP WILD-TYPE" 
    TCGA-67-6216     TCGA-67-6217     TCGA-71-6725     TCGA-73-4658 
"SVOP WILD-TYPE" "SVOP WILD-TYPE" "SVOP WILD-TYPE" "SVOP WILD-TYPE" 
    TCGA-73-4659     TCGA-73-4662     TCGA-73-4666     TCGA-73-4668 
"SVOP WILD-TYPE" "SVOP WILD-TYPE" "SVOP WILD-TYPE" "SVOP WILD-TYPE" 
    TCGA-73-4670     TCGA-73-4675     TCGA-73-4676     TCGA-73-4677 
"SVOP WILD-TYPE" "SVOP WILD-TYPE" "SVOP WILD-TYPE" "SVOP WILD-TYPE" 
    TCGA-91-6828     TCGA-91-6829     TCGA-91-6831     TCGA-91-6835 
"SVOP WILD-TYPE" "SVOP WILD-TYPE" "SVOP WILD-TYPE" "SVOP WILD-TYPE" 
    TCGA-91-6836 
"SVOP WILD-TYPE" 
[1] "hr=" "1.1"
D201V2, continuous
D201V3, binary
[1] "tbl2"
                cls
clus             [,1] [,2]
  SVOP MUTATED      3    4
  SVOP WILD-TYPE   90   75
        clus
vv       SVOP MUTATED SVOP WILD-TYPE
  FEMALE            3             90
  MALE              4             75
D201V4, continuous
[1] "Remove cluster labels:" "SVOP MUTATED"          
clus
  SVOP MUTATED SVOP WILD-TYPE 
             1             11 
    TCGA-35-4122     TCGA-35-4123     TCGA-64-1677     TCGA-64-5778 
"SVOP WILD-TYPE" "SVOP WILD-TYPE" "SVOP WILD-TYPE" "SVOP WILD-TYPE" 
    TCGA-71-6725     TCGA-73-4659     TCGA-73-4662     TCGA-73-4666 
"SVOP WILD-TYPE" "SVOP WILD-TYPE" "SVOP WILD-TYPE" "SVOP WILD-TYPE" 
    TCGA-73-4668     TCGA-73-4676     TCGA-75-5122 
"SVOP WILD-TYPE" "SVOP WILD-TYPE" "SVOP WILD-TYPE" 
D201V5, multiclass
D201V6, multiclass
    clus
vv   SVOP MUTATED SVOP WILD-TYPE
  T1            1             40
  T2            4            104
  T3            1             13
  T4            1              7
D201V7, multiclass
       clus
vv      SVOP MUTATED SVOP WILD-TYPE
  N0               2             93
  N1               2             35
  N2+N3            3             32
D201V8, multiclass
    clus
vv   SVOP MUTATED SVOP WILD-TYPE
  M0            6            131
  M1            0              9
  MX            1             21
D201V9, multiclass
     clus
vv    SVOP MUTATED SVOP WILD-TYPE
  I              2             86
  II             1             32
  III            3             36
  IV             0              9
D201V10, binary
[1] "tbl2"
                cls
clus             [,1] [,2]
  SVOP MUTATED      0    7
  SVOP WILD-TYPE   16  149
     clus
vv    SVOP MUTATED SVOP WILD-TYPE
  NO             0             16
  YES            7            149
D201V11, continuous
D201V12, continuous
D201V13, multiclass
                                             clus
vv                                            SVOP MUTATED SVOP WILD-TYPE
  CURRENT REFORMED SMOKER FOR < OR = 15 YEARS            5             57
  CURRENT REFORMED SMOKER FOR > 15 YEARS                 0             46
  CURRENT SMOKER                                         2             26
  LIFELONG NON-SMOKER                                    0             24
D201V14, continuous

Clustering(202) Variable = NOVA1 MUTATION ANALYSIS
D202V1, survival
                 sevent
clus2              0  1
  NOVA1 MUTATED    4  5
  NOVA1 WILD-TYPE 95 45
  NOVA1 MUTATED NOVA1 WILD-TYPE 
              9             140 
  NOVA1 MUTATED NOVA1 WILD-TYPE 
              5              45 
$`NOVA1 MUTATED`
TCGA-05-4398 TCGA-38-4631 TCGA-44-2657 TCGA-50-5933 TCGA-50-6590 TCGA-50-6594 
       47.05        11.64        13.15        77.88        42.31        12.16 
TCGA-64-5781 TCGA-67-3771 TCGA-91-6829 
       39.52         1.97        41.33 

$`NOVA1 WILD-TYPE`
TCGA-05-4249 TCGA-05-4250 TCGA-05-4382 TCGA-05-4384 TCGA-05-4390 TCGA-05-4396 
       38.07         3.98        19.92        14.01        37.02         9.96 
TCGA-05-4397 TCGA-05-4402 TCGA-05-4405 TCGA-05-4415 TCGA-05-4417 TCGA-05-4418 
       24.03         8.02        20.05         2.96        14.93         8.98 
TCGA-05-4420 TCGA-05-4424 TCGA-05-4426 TCGA-05-4427 TCGA-05-4430 TCGA-05-4432 
       29.95        30.02        26.01        26.01        25.02        25.02 
TCGA-05-4433 TCGA-05-4434 TCGA-05-5420 TCGA-05-5423 TCGA-05-5425 TCGA-05-5429 
       24.00        15.02         1.02         4.96         2.96         0.99 
TCGA-05-5715 TCGA-35-3615 TCGA-35-4122 TCGA-35-4123 TCGA-35-5375 TCGA-38-4625 
        2.04         0.46         7.36         5.95         8.68        47.61 
TCGA-38-4626 TCGA-38-4627 TCGA-38-4628 TCGA-38-4629 TCGA-38-4630 TCGA-38-4632 
       85.32        37.71        49.02        28.37        35.28        44.61 
TCGA-38-6178 TCGA-44-2655 TCGA-44-2656 TCGA-44-2659 TCGA-44-2661 TCGA-44-2662 
        5.19        18.87        19.10        17.39         3.39        15.78 
TCGA-44-2665 TCGA-44-2666 TCGA-44-2668 TCGA-44-3396 TCGA-44-3398 TCGA-44-3918 
       13.15         3.19         8.09        10.22         8.32         6.44 
TCGA-44-3919 TCGA-44-4112 TCGA-44-5643 TCGA-44-5645 TCGA-44-6144 TCGA-44-6145 
        6.21         4.60         3.48         6.84         0.30         3.35 
TCGA-44-6146 TCGA-44-6147 TCGA-44-6148 TCGA-44-6774 TCGA-44-6775 TCGA-44-6776 
        9.93         7.76         3.12         5.42         2.70        63.72 
TCGA-44-6777 TCGA-44-6778 TCGA-44-6779 TCGA-49-4486 TCGA-49-4487 TCGA-49-4488 
       32.45        36.49        16.41        76.21        28.11        28.57 
TCGA-49-4490 TCGA-49-4494 TCGA-49-4501 TCGA-49-4505 TCGA-49-4506 TCGA-49-4507 
       12.66        35.54        46.72        14.07        32.84         8.81 
TCGA-49-4510 TCGA-49-4512 TCGA-49-4514 TCGA-49-6742 TCGA-49-6743 TCGA-49-6744 
       29.46        29.75        43.20        15.02        12.13        12.99 
TCGA-49-6745 TCGA-50-5044 TCGA-50-5045 TCGA-50-5049 TCGA-50-5051 TCGA-50-5055 
        4.93        20.48        71.47        48.82        14.96        25.81 
TCGA-50-5066 TCGA-50-5068 TCGA-50-5072 TCGA-50-5930 TCGA-50-5931 TCGA-50-5932 
        9.76        49.28         8.05         9.27         8.78        35.87 
TCGA-50-5935 TCGA-50-5936 TCGA-50-5939 TCGA-50-5941 TCGA-50-5942 TCGA-50-5944 
       21.47         8.45        15.12         9.37         4.44        12.26 
TCGA-50-5946 TCGA-50-6591 TCGA-50-6592 TCGA-50-6593 TCGA-50-6595 TCGA-50-6597 
       11.47         3.88        25.51        11.05         6.21        33.37 
TCGA-55-1592 TCGA-55-1594 TCGA-55-1595 TCGA-55-1596 TCGA-55-5899 TCGA-55-6543 
       23.05        38.73        48.62        45.17         2.86         0.07 
TCGA-55-6642 TCGA-55-6712 TCGA-64-1676 TCGA-64-1677 TCGA-64-1678 TCGA-64-1680 
       32.61         0.79        56.81        20.65        39.09        37.02 
TCGA-64-5774 TCGA-64-5775 TCGA-64-5778 TCGA-64-5779 TCGA-64-5815 TCGA-67-3770 
       83.84         0.10        30.44        16.67         7.33         0.99 
TCGA-67-3772 TCGA-67-3773 TCGA-67-3774 TCGA-67-6215 TCGA-67-6216 TCGA-67-6217 
        0.59         2.04         0.59         0.89         0.69        13.87 
TCGA-71-6725 TCGA-73-4658 TCGA-73-4659 TCGA-73-4662 TCGA-73-4666 TCGA-73-4668 
        2.01        52.57        23.38        29.95        20.28        15.35 
TCGA-73-4670 TCGA-73-4675 TCGA-73-4676 TCGA-73-4677 TCGA-91-6828 TCGA-91-6831 
        0.46         1.32         4.01         1.25         1.22         1.28 
TCGA-91-6835 TCGA-91-6836 
        1.15         0.36 

  NOVA1 MUTATED NOVA1 WILD-TYPE 
           1.97            0.07 
  NOVA1 MUTATED NOVA1 WILD-TYPE 
          77.88           85.32 
  NOVA1 MUTATED NOVA1 WILD-TYPE 
          39.52           13.51 
[1] "2.0 - 77.9 (39.5)" "0.1 - 85.3 (13.5)"
     TCGA-05-4249      TCGA-05-4250      TCGA-05-4382      TCGA-05-4384 
"NOVA1 WILD-TYPE" "NOVA1 WILD-TYPE" "NOVA1 WILD-TYPE" "NOVA1 WILD-TYPE" 
     TCGA-05-4390      TCGA-05-4396      TCGA-05-4397      TCGA-05-4398 
"NOVA1 WILD-TYPE" "NOVA1 WILD-TYPE" "NOVA1 WILD-TYPE"   "NOVA1 MUTATED" 
     TCGA-05-4402      TCGA-05-4405      TCGA-05-4415      TCGA-05-4417 
"NOVA1 WILD-TYPE" "NOVA1 WILD-TYPE" "NOVA1 WILD-TYPE" "NOVA1 WILD-TYPE" 
     TCGA-05-4418      TCGA-05-4420      TCGA-05-4424      TCGA-05-4426 
"NOVA1 WILD-TYPE" "NOVA1 WILD-TYPE" "NOVA1 WILD-TYPE" "NOVA1 WILD-TYPE" 
     TCGA-05-4427      TCGA-05-4430      TCGA-05-4432      TCGA-05-4433 
"NOVA1 WILD-TYPE" "NOVA1 WILD-TYPE" "NOVA1 WILD-TYPE" "NOVA1 WILD-TYPE" 
     TCGA-05-4434      TCGA-05-5420      TCGA-05-5423      TCGA-05-5425 
"NOVA1 WILD-TYPE" "NOVA1 WILD-TYPE" "NOVA1 WILD-TYPE" "NOVA1 WILD-TYPE" 
     TCGA-05-5429      TCGA-05-5715      TCGA-35-3615      TCGA-35-4122 
"NOVA1 WILD-TYPE" "NOVA1 WILD-TYPE" "NOVA1 WILD-TYPE" "NOVA1 WILD-TYPE" 
     TCGA-35-4123      TCGA-35-5375      TCGA-38-4625      TCGA-38-4626 
"NOVA1 WILD-TYPE" "NOVA1 WILD-TYPE" "NOVA1 WILD-TYPE" "NOVA1 WILD-TYPE" 
     TCGA-38-4627      TCGA-38-4628      TCGA-38-4629      TCGA-38-4630 
"NOVA1 WILD-TYPE" "NOVA1 WILD-TYPE" "NOVA1 WILD-TYPE" "NOVA1 WILD-TYPE" 
     TCGA-38-4631      TCGA-38-4632      TCGA-38-6178      TCGA-44-2655 
  "NOVA1 MUTATED" "NOVA1 WILD-TYPE" "NOVA1 WILD-TYPE" "NOVA1 WILD-TYPE" 
     TCGA-44-2656      TCGA-44-2657      TCGA-44-2659      TCGA-44-2661 
"NOVA1 WILD-TYPE"   "NOVA1 MUTATED" "NOVA1 WILD-TYPE" "NOVA1 WILD-TYPE" 
     TCGA-44-2662      TCGA-44-2665      TCGA-44-2666      TCGA-44-2668 
"NOVA1 WILD-TYPE" "NOVA1 WILD-TYPE" "NOVA1 WILD-TYPE" "NOVA1 WILD-TYPE" 
     TCGA-44-3396      TCGA-44-3398      TCGA-44-3918      TCGA-44-3919 
"NOVA1 WILD-TYPE" "NOVA1 WILD-TYPE" "NOVA1 WILD-TYPE" "NOVA1 WILD-TYPE" 
     TCGA-44-4112      TCGA-44-5643      TCGA-44-5645      TCGA-44-6144 
"NOVA1 WILD-TYPE" "NOVA1 WILD-TYPE" "NOVA1 WILD-TYPE" "NOVA1 WILD-TYPE" 
     TCGA-44-6145      TCGA-44-6146      TCGA-44-6147      TCGA-44-6148 
"NOVA1 WILD-TYPE" "NOVA1 WILD-TYPE" "NOVA1 WILD-TYPE" "NOVA1 WILD-TYPE" 
     TCGA-44-6774      TCGA-44-6775      TCGA-44-6776      TCGA-44-6777 
"NOVA1 WILD-TYPE" "NOVA1 WILD-TYPE" "NOVA1 WILD-TYPE" "NOVA1 WILD-TYPE" 
     TCGA-44-6778      TCGA-44-6779      TCGA-49-4486      TCGA-49-4487 
"NOVA1 WILD-TYPE" "NOVA1 WILD-TYPE" "NOVA1 WILD-TYPE" "NOVA1 WILD-TYPE" 
     TCGA-49-4488      TCGA-49-4490      TCGA-49-4494      TCGA-49-4501 
"NOVA1 WILD-TYPE" "NOVA1 WILD-TYPE" "NOVA1 WILD-TYPE" "NOVA1 WILD-TYPE" 
     TCGA-49-4505      TCGA-49-4506      TCGA-49-4507      TCGA-49-4510 
"NOVA1 WILD-TYPE" "NOVA1 WILD-TYPE" "NOVA1 WILD-TYPE" "NOVA1 WILD-TYPE" 
     TCGA-49-4512      TCGA-49-4514      TCGA-49-6742      TCGA-49-6743 
"NOVA1 WILD-TYPE" "NOVA1 WILD-TYPE" "NOVA1 WILD-TYPE" "NOVA1 WILD-TYPE" 
     TCGA-49-6744      TCGA-49-6745      TCGA-50-5044      TCGA-50-5045 
"NOVA1 WILD-TYPE" "NOVA1 WILD-TYPE" "NOVA1 WILD-TYPE" "NOVA1 WILD-TYPE" 
     TCGA-50-5049      TCGA-50-5051      TCGA-50-5055      TCGA-50-5066 
"NOVA1 WILD-TYPE" "NOVA1 WILD-TYPE" "NOVA1 WILD-TYPE" "NOVA1 WILD-TYPE" 
     TCGA-50-5068      TCGA-50-5072      TCGA-50-5930      TCGA-50-5931 
"NOVA1 WILD-TYPE" "NOVA1 WILD-TYPE" "NOVA1 WILD-TYPE" "NOVA1 WILD-TYPE" 
     TCGA-50-5932      TCGA-50-5933      TCGA-50-5935      TCGA-50-5936 
"NOVA1 WILD-TYPE"   "NOVA1 MUTATED" "NOVA1 WILD-TYPE" "NOVA1 WILD-TYPE" 
     TCGA-50-5939      TCGA-50-5941      TCGA-50-5942      TCGA-50-5944 
"NOVA1 WILD-TYPE" "NOVA1 WILD-TYPE" "NOVA1 WILD-TYPE" "NOVA1 WILD-TYPE" 
     TCGA-50-5946      TCGA-50-6590      TCGA-50-6591      TCGA-50-6592 
"NOVA1 WILD-TYPE"   "NOVA1 MUTATED" "NOVA1 WILD-TYPE" "NOVA1 WILD-TYPE" 
     TCGA-50-6593      TCGA-50-6594      TCGA-50-6595      TCGA-50-6597 
"NOVA1 WILD-TYPE"   "NOVA1 MUTATED" "NOVA1 WILD-TYPE" "NOVA1 WILD-TYPE" 
     TCGA-55-1592      TCGA-55-1594      TCGA-55-1595      TCGA-55-1596 
"NOVA1 WILD-TYPE" "NOVA1 WILD-TYPE" "NOVA1 WILD-TYPE" "NOVA1 WILD-TYPE" 
     TCGA-55-5899      TCGA-55-6543      TCGA-55-6642      TCGA-55-6712 
"NOVA1 WILD-TYPE" "NOVA1 WILD-TYPE" "NOVA1 WILD-TYPE" "NOVA1 WILD-TYPE" 
     TCGA-64-1676      TCGA-64-1677      TCGA-64-1678      TCGA-64-1680 
"NOVA1 WILD-TYPE" "NOVA1 WILD-TYPE" "NOVA1 WILD-TYPE" "NOVA1 WILD-TYPE" 
     TCGA-64-5774      TCGA-64-5775      TCGA-64-5778      TCGA-64-5779 
"NOVA1 WILD-TYPE" "NOVA1 WILD-TYPE" "NOVA1 WILD-TYPE" "NOVA1 WILD-TYPE" 
     TCGA-64-5781      TCGA-64-5815      TCGA-67-3770      TCGA-67-3771 
  "NOVA1 MUTATED" "NOVA1 WILD-TYPE" "NOVA1 WILD-TYPE"   "NOVA1 MUTATED" 
     TCGA-67-3772      TCGA-67-3773      TCGA-67-3774      TCGA-67-6215 
"NOVA1 WILD-TYPE" "NOVA1 WILD-TYPE" "NOVA1 WILD-TYPE" "NOVA1 WILD-TYPE" 
     TCGA-67-6216      TCGA-67-6217      TCGA-71-6725      TCGA-73-4658 
"NOVA1 WILD-TYPE" "NOVA1 WILD-TYPE" "NOVA1 WILD-TYPE" "NOVA1 WILD-TYPE" 
     TCGA-73-4659      TCGA-73-4662      TCGA-73-4666      TCGA-73-4668 
"NOVA1 WILD-TYPE" "NOVA1 WILD-TYPE" "NOVA1 WILD-TYPE" "NOVA1 WILD-TYPE" 
     TCGA-73-4670      TCGA-73-4675      TCGA-73-4676      TCGA-73-4677 
"NOVA1 WILD-TYPE" "NOVA1 WILD-TYPE" "NOVA1 WILD-TYPE" "NOVA1 WILD-TYPE" 
     TCGA-91-6828      TCGA-91-6829      TCGA-91-6831      TCGA-91-6835 
"NOVA1 WILD-TYPE"   "NOVA1 MUTATED" "NOVA1 WILD-TYPE" "NOVA1 WILD-TYPE" 
     TCGA-91-6836 
"NOVA1 WILD-TYPE" 
     TCGA-05-4249      TCGA-05-4250      TCGA-05-4382      TCGA-05-4384 
"NOVA1 WILD-TYPE" "NOVA1 WILD-TYPE" "NOVA1 WILD-TYPE" "NOVA1 WILD-TYPE" 
     TCGA-05-4390      TCGA-05-4396      TCGA-05-4397      TCGA-05-4398 
"NOVA1 WILD-TYPE" "NOVA1 WILD-TYPE" "NOVA1 WILD-TYPE"   "NOVA1 MUTATED" 
     TCGA-05-4402      TCGA-05-4405      TCGA-05-4415      TCGA-05-4417 
"NOVA1 WILD-TYPE" "NOVA1 WILD-TYPE" "NOVA1 WILD-TYPE" "NOVA1 WILD-TYPE" 
     TCGA-05-4418      TCGA-05-4420      TCGA-05-4424      TCGA-05-4426 
"NOVA1 WILD-TYPE" "NOVA1 WILD-TYPE" "NOVA1 WILD-TYPE" "NOVA1 WILD-TYPE" 
     TCGA-05-4427      TCGA-05-4430      TCGA-05-4432      TCGA-05-4433 
"NOVA1 WILD-TYPE" "NOVA1 WILD-TYPE" "NOVA1 WILD-TYPE" "NOVA1 WILD-TYPE" 
     TCGA-05-4434      TCGA-05-5420      TCGA-05-5423      TCGA-05-5425 
"NOVA1 WILD-TYPE" "NOVA1 WILD-TYPE" "NOVA1 WILD-TYPE" "NOVA1 WILD-TYPE" 
     TCGA-05-5429      TCGA-05-5715      TCGA-35-3615      TCGA-35-4122 
"NOVA1 WILD-TYPE" "NOVA1 WILD-TYPE" "NOVA1 WILD-TYPE" "NOVA1 WILD-TYPE" 
     TCGA-35-4123      TCGA-35-5375      TCGA-38-4625      TCGA-38-4626 
"NOVA1 WILD-TYPE" "NOVA1 WILD-TYPE" "NOVA1 WILD-TYPE" "NOVA1 WILD-TYPE" 
     TCGA-38-4627      TCGA-38-4628      TCGA-38-4629      TCGA-38-4630 
"NOVA1 WILD-TYPE" "NOVA1 WILD-TYPE" "NOVA1 WILD-TYPE" "NOVA1 WILD-TYPE" 
     TCGA-38-4631      TCGA-38-4632      TCGA-38-6178      TCGA-44-2655 
  "NOVA1 MUTATED" "NOVA1 WILD-TYPE" "NOVA1 WILD-TYPE" "NOVA1 WILD-TYPE" 
     TCGA-44-2656      TCGA-44-2657      TCGA-44-2659      TCGA-44-2661 
"NOVA1 WILD-TYPE"   "NOVA1 MUTATED" "NOVA1 WILD-TYPE" "NOVA1 WILD-TYPE" 
     TCGA-44-2662      TCGA-44-2665      TCGA-44-2666      TCGA-44-2668 
"NOVA1 WILD-TYPE" "NOVA1 WILD-TYPE" "NOVA1 WILD-TYPE" "NOVA1 WILD-TYPE" 
     TCGA-44-3396      TCGA-44-3398      TCGA-44-3918      TCGA-44-3919 
"NOVA1 WILD-TYPE" "NOVA1 WILD-TYPE" "NOVA1 WILD-TYPE" "NOVA1 WILD-TYPE" 
     TCGA-44-4112      TCGA-44-5643      TCGA-44-5645      TCGA-44-6144 
"NOVA1 WILD-TYPE" "NOVA1 WILD-TYPE" "NOVA1 WILD-TYPE" "NOVA1 WILD-TYPE" 
     TCGA-44-6145      TCGA-44-6146      TCGA-44-6147      TCGA-44-6148 
"NOVA1 WILD-TYPE" "NOVA1 WILD-TYPE" "NOVA1 WILD-TYPE" "NOVA1 WILD-TYPE" 
     TCGA-44-6774      TCGA-44-6775      TCGA-44-6776      TCGA-44-6777 
"NOVA1 WILD-TYPE" "NOVA1 WILD-TYPE" "NOVA1 WILD-TYPE" "NOVA1 WILD-TYPE" 
     TCGA-44-6778      TCGA-44-6779      TCGA-49-4486      TCGA-49-4487 
"NOVA1 WILD-TYPE" "NOVA1 WILD-TYPE" "NOVA1 WILD-TYPE" "NOVA1 WILD-TYPE" 
     TCGA-49-4488      TCGA-49-4490      TCGA-49-4494      TCGA-49-4501 
"NOVA1 WILD-TYPE" "NOVA1 WILD-TYPE" "NOVA1 WILD-TYPE" "NOVA1 WILD-TYPE" 
     TCGA-49-4505      TCGA-49-4506      TCGA-49-4507      TCGA-49-4510 
"NOVA1 WILD-TYPE" "NOVA1 WILD-TYPE" "NOVA1 WILD-TYPE" "NOVA1 WILD-TYPE" 
     TCGA-49-4512      TCGA-49-4514      TCGA-49-6742      TCGA-49-6743 
"NOVA1 WILD-TYPE" "NOVA1 WILD-TYPE" "NOVA1 WILD-TYPE" "NOVA1 WILD-TYPE" 
     TCGA-49-6744      TCGA-49-6745      TCGA-50-5044      TCGA-50-5045 
"NOVA1 WILD-TYPE" "NOVA1 WILD-TYPE" "NOVA1 WILD-TYPE" "NOVA1 WILD-TYPE" 
     TCGA-50-5049      TCGA-50-5051      TCGA-50-5055      TCGA-50-5066 
"NOVA1 WILD-TYPE" "NOVA1 WILD-TYPE" "NOVA1 WILD-TYPE" "NOVA1 WILD-TYPE" 
     TCGA-50-5068      TCGA-50-5072      TCGA-50-5930      TCGA-50-5931 
"NOVA1 WILD-TYPE" "NOVA1 WILD-TYPE" "NOVA1 WILD-TYPE" "NOVA1 WILD-TYPE" 
     TCGA-50-5932      TCGA-50-5933      TCGA-50-5935      TCGA-50-5936 
"NOVA1 WILD-TYPE"   "NOVA1 MUTATED" "NOVA1 WILD-TYPE" "NOVA1 WILD-TYPE" 
     TCGA-50-5939      TCGA-50-5941      TCGA-50-5942      TCGA-50-5944 
"NOVA1 WILD-TYPE" "NOVA1 WILD-TYPE" "NOVA1 WILD-TYPE" "NOVA1 WILD-TYPE" 
     TCGA-50-5946      TCGA-50-6590      TCGA-50-6591      TCGA-50-6592 
"NOVA1 WILD-TYPE"   "NOVA1 MUTATED" "NOVA1 WILD-TYPE" "NOVA1 WILD-TYPE" 
     TCGA-50-6593      TCGA-50-6594      TCGA-50-6595      TCGA-50-6597 
"NOVA1 WILD-TYPE"   "NOVA1 MUTATED" "NOVA1 WILD-TYPE" "NOVA1 WILD-TYPE" 
     TCGA-55-1592      TCGA-55-1594      TCGA-55-1595      TCGA-55-1596 
"NOVA1 WILD-TYPE" "NOVA1 WILD-TYPE" "NOVA1 WILD-TYPE" "NOVA1 WILD-TYPE" 
     TCGA-55-5899      TCGA-55-6543      TCGA-55-6642      TCGA-55-6712 
"NOVA1 WILD-TYPE" "NOVA1 WILD-TYPE" "NOVA1 WILD-TYPE" "NOVA1 WILD-TYPE" 
     TCGA-64-1676      TCGA-64-1677      TCGA-64-1678      TCGA-64-1680 
"NOVA1 WILD-TYPE" "NOVA1 WILD-TYPE" "NOVA1 WILD-TYPE" "NOVA1 WILD-TYPE" 
     TCGA-64-5774      TCGA-64-5775      TCGA-64-5778      TCGA-64-5779 
"NOVA1 WILD-TYPE" "NOVA1 WILD-TYPE" "NOVA1 WILD-TYPE" "NOVA1 WILD-TYPE" 
     TCGA-64-5781      TCGA-64-5815      TCGA-67-3770      TCGA-67-3771 
  "NOVA1 MUTATED" "NOVA1 WILD-TYPE" "NOVA1 WILD-TYPE"   "NOVA1 MUTATED" 
     TCGA-67-3772      TCGA-67-3773      TCGA-67-3774      TCGA-67-6215 
"NOVA1 WILD-TYPE" "NOVA1 WILD-TYPE" "NOVA1 WILD-TYPE" "NOVA1 WILD-TYPE" 
     TCGA-67-6216      TCGA-67-6217      TCGA-71-6725      TCGA-73-4658 
"NOVA1 WILD-TYPE" "NOVA1 WILD-TYPE" "NOVA1 WILD-TYPE" "NOVA1 WILD-TYPE" 
     TCGA-73-4659      TCGA-73-4662      TCGA-73-4666      TCGA-73-4668 
"NOVA1 WILD-TYPE" "NOVA1 WILD-TYPE" "NOVA1 WILD-TYPE" "NOVA1 WILD-TYPE" 
     TCGA-73-4670      TCGA-73-4675      TCGA-73-4676      TCGA-73-4677 
"NOVA1 WILD-TYPE" "NOVA1 WILD-TYPE" "NOVA1 WILD-TYPE" "NOVA1 WILD-TYPE" 
     TCGA-91-6828      TCGA-91-6829      TCGA-91-6831      TCGA-91-6835 
"NOVA1 WILD-TYPE"   "NOVA1 MUTATED" "NOVA1 WILD-TYPE" "NOVA1 WILD-TYPE" 
     TCGA-91-6836 
"NOVA1 WILD-TYPE" 
     TCGA-05-4249      TCGA-05-4250      TCGA-05-4382      TCGA-05-4384 
"NOVA1 WILD-TYPE" "NOVA1 WILD-TYPE" "NOVA1 WILD-TYPE" "NOVA1 WILD-TYPE" 
     TCGA-05-4390      TCGA-05-4396      TCGA-05-4397      TCGA-05-4398 
"NOVA1 WILD-TYPE" "NOVA1 WILD-TYPE" "NOVA1 WILD-TYPE"   "NOVA1 MUTATED" 
     TCGA-05-4402      TCGA-05-4405      TCGA-05-4415      TCGA-05-4417 
"NOVA1 WILD-TYPE" "NOVA1 WILD-TYPE" "NOVA1 WILD-TYPE" "NOVA1 WILD-TYPE" 
     TCGA-05-4418      TCGA-05-4420      TCGA-05-4424      TCGA-05-4426 
"NOVA1 WILD-TYPE" "NOVA1 WILD-TYPE" "NOVA1 WILD-TYPE" "NOVA1 WILD-TYPE" 
     TCGA-05-4427      TCGA-05-4430      TCGA-05-4432      TCGA-05-4433 
"NOVA1 WILD-TYPE" "NOVA1 WILD-TYPE" "NOVA1 WILD-TYPE" "NOVA1 WILD-TYPE" 
     TCGA-05-4434      TCGA-05-5420      TCGA-05-5423      TCGA-05-5425 
"NOVA1 WILD-TYPE" "NOVA1 WILD-TYPE" "NOVA1 WILD-TYPE" "NOVA1 WILD-TYPE" 
     TCGA-05-5429      TCGA-05-5715      TCGA-35-3615      TCGA-35-4122 
"NOVA1 WILD-TYPE" "NOVA1 WILD-TYPE" "NOVA1 WILD-TYPE" "NOVA1 WILD-TYPE" 
     TCGA-35-4123      TCGA-35-5375      TCGA-38-4625      TCGA-38-4626 
"NOVA1 WILD-TYPE" "NOVA1 WILD-TYPE" "NOVA1 WILD-TYPE" "NOVA1 WILD-TYPE" 
     TCGA-38-4627      TCGA-38-4628      TCGA-38-4629      TCGA-38-4630 
"NOVA1 WILD-TYPE" "NOVA1 WILD-TYPE" "NOVA1 WILD-TYPE" "NOVA1 WILD-TYPE" 
     TCGA-38-4631      TCGA-38-4632      TCGA-38-6178      TCGA-44-2655 
  "NOVA1 MUTATED" "NOVA1 WILD-TYPE" "NOVA1 WILD-TYPE" "NOVA1 WILD-TYPE" 
     TCGA-44-2656      TCGA-44-2657      TCGA-44-2659      TCGA-44-2661 
"NOVA1 WILD-TYPE"   "NOVA1 MUTATED" "NOVA1 WILD-TYPE" "NOVA1 WILD-TYPE" 
     TCGA-44-2662      TCGA-44-2665      TCGA-44-2666      TCGA-44-2668 
"NOVA1 WILD-TYPE" "NOVA1 WILD-TYPE" "NOVA1 WILD-TYPE" "NOVA1 WILD-TYPE" 
     TCGA-44-3396      TCGA-44-3398      TCGA-44-3918      TCGA-44-3919 
"NOVA1 WILD-TYPE" "NOVA1 WILD-TYPE" "NOVA1 WILD-TYPE" "NOVA1 WILD-TYPE" 
     TCGA-44-4112      TCGA-44-5643      TCGA-44-5645      TCGA-44-6144 
"NOVA1 WILD-TYPE" "NOVA1 WILD-TYPE" "NOVA1 WILD-TYPE" "NOVA1 WILD-TYPE" 
     TCGA-44-6145      TCGA-44-6146      TCGA-44-6147      TCGA-44-6148 
"NOVA1 WILD-TYPE" "NOVA1 WILD-TYPE" "NOVA1 WILD-TYPE" "NOVA1 WILD-TYPE" 
     TCGA-44-6774      TCGA-44-6775      TCGA-44-6776      TCGA-44-6777 
"NOVA1 WILD-TYPE" "NOVA1 WILD-TYPE" "NOVA1 WILD-TYPE" "NOVA1 WILD-TYPE" 
     TCGA-44-6778      TCGA-44-6779      TCGA-49-4486      TCGA-49-4487 
"NOVA1 WILD-TYPE" "NOVA1 WILD-TYPE" "NOVA1 WILD-TYPE" "NOVA1 WILD-TYPE" 
     TCGA-49-4488      TCGA-49-4490      TCGA-49-4494      TCGA-49-4501 
"NOVA1 WILD-TYPE" "NOVA1 WILD-TYPE" "NOVA1 WILD-TYPE" "NOVA1 WILD-TYPE" 
     TCGA-49-4505      TCGA-49-4506      TCGA-49-4507      TCGA-49-4510 
"NOVA1 WILD-TYPE" "NOVA1 WILD-TYPE" "NOVA1 WILD-TYPE" "NOVA1 WILD-TYPE" 
     TCGA-49-4512      TCGA-49-4514      TCGA-49-6742      TCGA-49-6743 
"NOVA1 WILD-TYPE" "NOVA1 WILD-TYPE" "NOVA1 WILD-TYPE" "NOVA1 WILD-TYPE" 
     TCGA-49-6744      TCGA-49-6745      TCGA-50-5044      TCGA-50-5045 
"NOVA1 WILD-TYPE" "NOVA1 WILD-TYPE" "NOVA1 WILD-TYPE" "NOVA1 WILD-TYPE" 
     TCGA-50-5049      TCGA-50-5051      TCGA-50-5055      TCGA-50-5066 
"NOVA1 WILD-TYPE" "NOVA1 WILD-TYPE" "NOVA1 WILD-TYPE" "NOVA1 WILD-TYPE" 
     TCGA-50-5068      TCGA-50-5072      TCGA-50-5930      TCGA-50-5931 
"NOVA1 WILD-TYPE" "NOVA1 WILD-TYPE" "NOVA1 WILD-TYPE" "NOVA1 WILD-TYPE" 
     TCGA-50-5932      TCGA-50-5933      TCGA-50-5935      TCGA-50-5936 
"NOVA1 WILD-TYPE"   "NOVA1 MUTATED" "NOVA1 WILD-TYPE" "NOVA1 WILD-TYPE" 
     TCGA-50-5939      TCGA-50-5941      TCGA-50-5942      TCGA-50-5944 
"NOVA1 WILD-TYPE" "NOVA1 WILD-TYPE" "NOVA1 WILD-TYPE" "NOVA1 WILD-TYPE" 
     TCGA-50-5946      TCGA-50-6590      TCGA-50-6591      TCGA-50-6592 
"NOVA1 WILD-TYPE"   "NOVA1 MUTATED" "NOVA1 WILD-TYPE" "NOVA1 WILD-TYPE" 
     TCGA-50-6593      TCGA-50-6594      TCGA-50-6595      TCGA-50-6597 
"NOVA1 WILD-TYPE"   "NOVA1 MUTATED" "NOVA1 WILD-TYPE" "NOVA1 WILD-TYPE" 
     TCGA-55-1592      TCGA-55-1594      TCGA-55-1595      TCGA-55-1596 
"NOVA1 WILD-TYPE" "NOVA1 WILD-TYPE" "NOVA1 WILD-TYPE" "NOVA1 WILD-TYPE" 
     TCGA-55-5899      TCGA-55-6543      TCGA-55-6642      TCGA-55-6712 
"NOVA1 WILD-TYPE" "NOVA1 WILD-TYPE" "NOVA1 WILD-TYPE" "NOVA1 WILD-TYPE" 
     TCGA-64-1676      TCGA-64-1677      TCGA-64-1678      TCGA-64-1680 
"NOVA1 WILD-TYPE" "NOVA1 WILD-TYPE" "NOVA1 WILD-TYPE" "NOVA1 WILD-TYPE" 
     TCGA-64-5774      TCGA-64-5775      TCGA-64-5778      TCGA-64-5779 
"NOVA1 WILD-TYPE" "NOVA1 WILD-TYPE" "NOVA1 WILD-TYPE" "NOVA1 WILD-TYPE" 
     TCGA-64-5781      TCGA-64-5815      TCGA-67-3770      TCGA-67-3771 
  "NOVA1 MUTATED" "NOVA1 WILD-TYPE" "NOVA1 WILD-TYPE"   "NOVA1 MUTATED" 
     TCGA-67-3772      TCGA-67-3773      TCGA-67-3774      TCGA-67-6215 
"NOVA1 WILD-TYPE" "NOVA1 WILD-TYPE" "NOVA1 WILD-TYPE" "NOVA1 WILD-TYPE" 
     TCGA-67-6216      TCGA-67-6217      TCGA-71-6725      TCGA-73-4658 
"NOVA1 WILD-TYPE" "NOVA1 WILD-TYPE" "NOVA1 WILD-TYPE" "NOVA1 WILD-TYPE" 
     TCGA-73-4659      TCGA-73-4662      TCGA-73-4666      TCGA-73-4668 
"NOVA1 WILD-TYPE" "NOVA1 WILD-TYPE" "NOVA1 WILD-TYPE" "NOVA1 WILD-TYPE" 
     TCGA-73-4670      TCGA-73-4675      TCGA-73-4676      TCGA-73-4677 
"NOVA1 WILD-TYPE" "NOVA1 WILD-TYPE" "NOVA1 WILD-TYPE" "NOVA1 WILD-TYPE" 
     TCGA-91-6828      TCGA-91-6829      TCGA-91-6831      TCGA-91-6835 
"NOVA1 WILD-TYPE"   "NOVA1 MUTATED" "NOVA1 WILD-TYPE" "NOVA1 WILD-TYPE" 
     TCGA-91-6836 
"NOVA1 WILD-TYPE" 
[1] "hr=" "1.2"
D202V2, continuous
D202V3, binary
[1] "tbl2"
                 cls
clus              [,1] [,2]
  NOVA1 MUTATED      7    3
  NOVA1 WILD-TYPE   86   76
        clus
vv       NOVA1 MUTATED NOVA1 WILD-TYPE
  FEMALE             7              86
  MALE               3              76
D202V4, continuous
D202V5, multiclass
D202V6, multiclass
    clus
vv   NOVA1 MUTATED NOVA1 WILD-TYPE
  T1             1              40
  T2             6             102
  T3             1              13
  T4             2               6
D202V7, multiclass
       clus
vv      NOVA1 MUTATED NOVA1 WILD-TYPE
  N0                6              89
  N1                0              37
  N2+N3             3              32
D202V8, multiclass
    clus
vv   NOVA1 MUTATED NOVA1 WILD-TYPE
  M0             9             128
  M1             0               9
  MX             1              21
D202V9, multiclass
     clus
vv    NOVA1 MUTATED NOVA1 WILD-TYPE
  I               7              81
  II              0              33
  III             3              36
  IV              0               9
D202V10, binary
[1] "tbl2"
                 cls
clus              [,1] [,2]
  NOVA1 MUTATED      1    9
  NOVA1 WILD-TYPE   15  147
     clus
vv    NOVA1 MUTATED NOVA1 WILD-TYPE
  NO              1              15
  YES             9             147
D202V11, continuous
D202V12, continuous
D202V13, multiclass
                                             clus
vv                                            NOVA1 MUTATED NOVA1 WILD-TYPE
  CURRENT REFORMED SMOKER FOR < OR = 15 YEARS             8              54
  CURRENT REFORMED SMOKER FOR > 15 YEARS                  0              46
  CURRENT SMOKER                                          1              27
  LIFELONG NON-SMOKER                                     0              24
D202V14, continuous

Clustering(203) Variable = SLC22A6 MUTATION ANALYSIS
D203V1, survival
                   sevent
clus2                0  1
  SLC22A6 MUTATED    6  2
  SLC22A6 WILD-TYPE 93 48
  SLC22A6 MUTATED SLC22A6 WILD-TYPE 
                8               141 
  SLC22A6 MUTATED SLC22A6 WILD-TYPE 
                2                48 
$`SLC22A6 MUTATED`
TCGA-05-4434 TCGA-35-4123 TCGA-44-2656 TCGA-44-2666 TCGA-44-6775 TCGA-55-5899 
       15.02         5.95        19.10         3.19         2.70         2.86 
TCGA-64-1676 TCGA-67-3771 
       56.81         1.97 

$`SLC22A6 WILD-TYPE`
TCGA-05-4249 TCGA-05-4250 TCGA-05-4382 TCGA-05-4384 TCGA-05-4390 TCGA-05-4396 
       38.07         3.98        19.92        14.01        37.02         9.96 
TCGA-05-4397 TCGA-05-4398 TCGA-05-4402 TCGA-05-4405 TCGA-05-4415 TCGA-05-4417 
       24.03        47.05         8.02        20.05         2.96        14.93 
TCGA-05-4418 TCGA-05-4420 TCGA-05-4424 TCGA-05-4426 TCGA-05-4427 TCGA-05-4430 
        8.98        29.95        30.02        26.01        26.01        25.02 
TCGA-05-4432 TCGA-05-4433 TCGA-05-5420 TCGA-05-5423 TCGA-05-5425 TCGA-05-5429 
       25.02        24.00         1.02         4.96         2.96         0.99 
TCGA-05-5715 TCGA-35-3615 TCGA-35-4122 TCGA-35-5375 TCGA-38-4625 TCGA-38-4626 
        2.04         0.46         7.36         8.68        47.61        85.32 
TCGA-38-4627 TCGA-38-4628 TCGA-38-4629 TCGA-38-4630 TCGA-38-4631 TCGA-38-4632 
       37.71        49.02        28.37        35.28        11.64        44.61 
TCGA-38-6178 TCGA-44-2655 TCGA-44-2657 TCGA-44-2659 TCGA-44-2661 TCGA-44-2662 
        5.19        18.87        13.15        17.39         3.39        15.78 
TCGA-44-2665 TCGA-44-2668 TCGA-44-3396 TCGA-44-3398 TCGA-44-3918 TCGA-44-3919 
       13.15         8.09        10.22         8.32         6.44         6.21 
TCGA-44-4112 TCGA-44-5643 TCGA-44-5645 TCGA-44-6144 TCGA-44-6145 TCGA-44-6146 
        4.60         3.48         6.84         0.30         3.35         9.93 
TCGA-44-6147 TCGA-44-6148 TCGA-44-6774 TCGA-44-6776 TCGA-44-6777 TCGA-44-6778 
        7.76         3.12         5.42        63.72        32.45        36.49 
TCGA-44-6779 TCGA-49-4486 TCGA-49-4487 TCGA-49-4488 TCGA-49-4490 TCGA-49-4494 
       16.41        76.21        28.11        28.57        12.66        35.54 
TCGA-49-4501 TCGA-49-4505 TCGA-49-4506 TCGA-49-4507 TCGA-49-4510 TCGA-49-4512 
       46.72        14.07        32.84         8.81        29.46        29.75 
TCGA-49-4514 TCGA-49-6742 TCGA-49-6743 TCGA-49-6744 TCGA-49-6745 TCGA-50-5044 
       43.20        15.02        12.13        12.99         4.93        20.48 
TCGA-50-5045 TCGA-50-5049 TCGA-50-5051 TCGA-50-5055 TCGA-50-5066 TCGA-50-5068 
       71.47        48.82        14.96        25.81         9.76        49.28 
TCGA-50-5072 TCGA-50-5930 TCGA-50-5931 TCGA-50-5932 TCGA-50-5933 TCGA-50-5935 
        8.05         9.27         8.78        35.87        77.88        21.47 
TCGA-50-5936 TCGA-50-5939 TCGA-50-5941 TCGA-50-5942 TCGA-50-5944 TCGA-50-5946 
        8.45        15.12         9.37         4.44        12.26        11.47 
TCGA-50-6590 TCGA-50-6591 TCGA-50-6592 TCGA-50-6593 TCGA-50-6594 TCGA-50-6595 
       42.31         3.88        25.51        11.05        12.16         6.21 
TCGA-50-6597 TCGA-55-1592 TCGA-55-1594 TCGA-55-1595 TCGA-55-1596 TCGA-55-6543 
       33.37        23.05        38.73        48.62        45.17         0.07 
TCGA-55-6642 TCGA-55-6712 TCGA-64-1677 TCGA-64-1678 TCGA-64-1680 TCGA-64-5774 
       32.61         0.79        20.65        39.09        37.02        83.84 
TCGA-64-5775 TCGA-64-5778 TCGA-64-5779 TCGA-64-5781 TCGA-64-5815 TCGA-67-3770 
        0.10        30.44        16.67        39.52         7.33         0.99 
TCGA-67-3772 TCGA-67-3773 TCGA-67-3774 TCGA-67-6215 TCGA-67-6216 TCGA-67-6217 
        0.59         2.04         0.59         0.89         0.69        13.87 
TCGA-71-6725 TCGA-73-4658 TCGA-73-4659 TCGA-73-4662 TCGA-73-4666 TCGA-73-4668 
        2.01        52.57        23.38        29.95        20.28        15.35 
TCGA-73-4670 TCGA-73-4675 TCGA-73-4676 TCGA-73-4677 TCGA-91-6828 TCGA-91-6829 
        0.46         1.32         4.01         1.25         1.22        41.33 
TCGA-91-6831 TCGA-91-6835 TCGA-91-6836 
        1.28         1.15         0.36 

  SLC22A6 MUTATED SLC22A6 WILD-TYPE 
             1.97              0.07 
  SLC22A6 MUTATED SLC22A6 WILD-TYPE 
            56.81             85.32 
  SLC22A6 MUTATED SLC22A6 WILD-TYPE 
             4.57             14.01 
[1] "2.0 - 56.8 (4.6)"  "0.1 - 85.3 (14.0)"
       TCGA-05-4249        TCGA-05-4250        TCGA-05-4382        TCGA-05-4384 
"SLC22A6 WILD-TYPE" "SLC22A6 WILD-TYPE" "SLC22A6 WILD-TYPE" "SLC22A6 WILD-TYPE" 
       TCGA-05-4390        TCGA-05-4396        TCGA-05-4397        TCGA-05-4398 
"SLC22A6 WILD-TYPE" "SLC22A6 WILD-TYPE" "SLC22A6 WILD-TYPE" "SLC22A6 WILD-TYPE" 
       TCGA-05-4402        TCGA-05-4405        TCGA-05-4415        TCGA-05-4417 
"SLC22A6 WILD-TYPE" "SLC22A6 WILD-TYPE" "SLC22A6 WILD-TYPE" "SLC22A6 WILD-TYPE" 
       TCGA-05-4418        TCGA-05-4420        TCGA-05-4424        TCGA-05-4426 
"SLC22A6 WILD-TYPE" "SLC22A6 WILD-TYPE" "SLC22A6 WILD-TYPE" "SLC22A6 WILD-TYPE" 
       TCGA-05-4427        TCGA-05-4430        TCGA-05-4432        TCGA-05-4433 
"SLC22A6 WILD-TYPE" "SLC22A6 WILD-TYPE" "SLC22A6 WILD-TYPE" "SLC22A6 WILD-TYPE" 
       TCGA-05-4434        TCGA-05-5420        TCGA-05-5423        TCGA-05-5425 
  "SLC22A6 MUTATED" "SLC22A6 WILD-TYPE" "SLC22A6 WILD-TYPE" "SLC22A6 WILD-TYPE" 
       TCGA-05-5429        TCGA-05-5715        TCGA-35-3615        TCGA-35-4122 
"SLC22A6 WILD-TYPE" "SLC22A6 WILD-TYPE" "SLC22A6 WILD-TYPE" "SLC22A6 WILD-TYPE" 
       TCGA-35-4123        TCGA-35-5375        TCGA-38-4625        TCGA-38-4626 
  "SLC22A6 MUTATED" "SLC22A6 WILD-TYPE" "SLC22A6 WILD-TYPE" "SLC22A6 WILD-TYPE" 
       TCGA-38-4627        TCGA-38-4628        TCGA-38-4629        TCGA-38-4630 
"SLC22A6 WILD-TYPE" "SLC22A6 WILD-TYPE" "SLC22A6 WILD-TYPE" "SLC22A6 WILD-TYPE" 
       TCGA-38-4631        TCGA-38-4632        TCGA-38-6178        TCGA-44-2655 
"SLC22A6 WILD-TYPE" "SLC22A6 WILD-TYPE" "SLC22A6 WILD-TYPE" "SLC22A6 WILD-TYPE" 
       TCGA-44-2656        TCGA-44-2657        TCGA-44-2659        TCGA-44-2661 
  "SLC22A6 MUTATED" "SLC22A6 WILD-TYPE" "SLC22A6 WILD-TYPE" "SLC22A6 WILD-TYPE" 
       TCGA-44-2662        TCGA-44-2665        TCGA-44-2666        TCGA-44-2668 
"SLC22A6 WILD-TYPE" "SLC22A6 WILD-TYPE"   "SLC22A6 MUTATED" "SLC22A6 WILD-TYPE" 
       TCGA-44-3396        TCGA-44-3398        TCGA-44-3918        TCGA-44-3919 
"SLC22A6 WILD-TYPE" "SLC22A6 WILD-TYPE" "SLC22A6 WILD-TYPE" "SLC22A6 WILD-TYPE" 
       TCGA-44-4112        TCGA-44-5643        TCGA-44-5645        TCGA-44-6144 
"SLC22A6 WILD-TYPE" "SLC22A6 WILD-TYPE" "SLC22A6 WILD-TYPE" "SLC22A6 WILD-TYPE" 
       TCGA-44-6145        TCGA-44-6146        TCGA-44-6147        TCGA-44-6148 
"SLC22A6 WILD-TYPE" "SLC22A6 WILD-TYPE" "SLC22A6 WILD-TYPE" "SLC22A6 WILD-TYPE" 
       TCGA-44-6774        TCGA-44-6775        TCGA-44-6776        TCGA-44-6777 
"SLC22A6 WILD-TYPE"   "SLC22A6 MUTATED" "SLC22A6 WILD-TYPE" "SLC22A6 WILD-TYPE" 
       TCGA-44-6778        TCGA-44-6779        TCGA-49-4486        TCGA-49-4487 
"SLC22A6 WILD-TYPE" "SLC22A6 WILD-TYPE" "SLC22A6 WILD-TYPE" "SLC22A6 WILD-TYPE" 
       TCGA-49-4488        TCGA-49-4490        TCGA-49-4494        TCGA-49-4501 
"SLC22A6 WILD-TYPE" "SLC22A6 WILD-TYPE" "SLC22A6 WILD-TYPE" "SLC22A6 WILD-TYPE" 
       TCGA-49-4505        TCGA-49-4506        TCGA-49-4507        TCGA-49-4510 
"SLC22A6 WILD-TYPE" "SLC22A6 WILD-TYPE" "SLC22A6 WILD-TYPE" "SLC22A6 WILD-TYPE" 
       TCGA-49-4512        TCGA-49-4514        TCGA-49-6742        TCGA-49-6743 
"SLC22A6 WILD-TYPE" "SLC22A6 WILD-TYPE" "SLC22A6 WILD-TYPE" "SLC22A6 WILD-TYPE" 
       TCGA-49-6744        TCGA-49-6745        TCGA-50-5044        TCGA-50-5045 
"SLC22A6 WILD-TYPE" "SLC22A6 WILD-TYPE" "SLC22A6 WILD-TYPE" "SLC22A6 WILD-TYPE" 
       TCGA-50-5049        TCGA-50-5051        TCGA-50-5055        TCGA-50-5066 
"SLC22A6 WILD-TYPE" "SLC22A6 WILD-TYPE" "SLC22A6 WILD-TYPE" "SLC22A6 WILD-TYPE" 
       TCGA-50-5068        TCGA-50-5072        TCGA-50-5930        TCGA-50-5931 
"SLC22A6 WILD-TYPE" "SLC22A6 WILD-TYPE" "SLC22A6 WILD-TYPE" "SLC22A6 WILD-TYPE" 
       TCGA-50-5932        TCGA-50-5933        TCGA-50-5935        TCGA-50-5936 
"SLC22A6 WILD-TYPE" "SLC22A6 WILD-TYPE" "SLC22A6 WILD-TYPE" "SLC22A6 WILD-TYPE" 
       TCGA-50-5939        TCGA-50-5941        TCGA-50-5942        TCGA-50-5944 
"SLC22A6 WILD-TYPE" "SLC22A6 WILD-TYPE" "SLC22A6 WILD-TYPE" "SLC22A6 WILD-TYPE" 
       TCGA-50-5946        TCGA-50-6590        TCGA-50-6591        TCGA-50-6592 
"SLC22A6 WILD-TYPE" "SLC22A6 WILD-TYPE" "SLC22A6 WILD-TYPE" "SLC22A6 WILD-TYPE" 
       TCGA-50-6593        TCGA-50-6594        TCGA-50-6595        TCGA-50-6597 
"SLC22A6 WILD-TYPE" "SLC22A6 WILD-TYPE" "SLC22A6 WILD-TYPE" "SLC22A6 WILD-TYPE" 
       TCGA-55-1592        TCGA-55-1594        TCGA-55-1595        TCGA-55-1596 
"SLC22A6 WILD-TYPE" "SLC22A6 WILD-TYPE" "SLC22A6 WILD-TYPE" "SLC22A6 WILD-TYPE" 
       TCGA-55-5899        TCGA-55-6543        TCGA-55-6642        TCGA-55-6712 
  "SLC22A6 MUTATED" "SLC22A6 WILD-TYPE" "SLC22A6 WILD-TYPE" "SLC22A6 WILD-TYPE" 
       TCGA-64-1676        TCGA-64-1677        TCGA-64-1678        TCGA-64-1680 
  "SLC22A6 MUTATED" "SLC22A6 WILD-TYPE" "SLC22A6 WILD-TYPE" "SLC22A6 WILD-TYPE" 
       TCGA-64-5774        TCGA-64-5775        TCGA-64-5778        TCGA-64-5779 
"SLC22A6 WILD-TYPE" "SLC22A6 WILD-TYPE" "SLC22A6 WILD-TYPE" "SLC22A6 WILD-TYPE" 
       TCGA-64-5781        TCGA-64-5815        TCGA-67-3770        TCGA-67-3771 
"SLC22A6 WILD-TYPE" "SLC22A6 WILD-TYPE" "SLC22A6 WILD-TYPE"   "SLC22A6 MUTATED" 
       TCGA-67-3772        TCGA-67-3773        TCGA-67-3774        TCGA-67-6215 
"SLC22A6 WILD-TYPE" "SLC22A6 WILD-TYPE" "SLC22A6 WILD-TYPE" "SLC22A6 WILD-TYPE" 
       TCGA-67-6216        TCGA-67-6217        TCGA-71-6725        TCGA-73-4658 
"SLC22A6 WILD-TYPE" "SLC22A6 WILD-TYPE" "SLC22A6 WILD-TYPE" "SLC22A6 WILD-TYPE" 
       TCGA-73-4659        TCGA-73-4662        TCGA-73-4666        TCGA-73-4668 
"SLC22A6 WILD-TYPE" "SLC22A6 WILD-TYPE" "SLC22A6 WILD-TYPE" "SLC22A6 WILD-TYPE" 
       TCGA-73-4670        TCGA-73-4675        TCGA-73-4676        TCGA-73-4677 
"SLC22A6 WILD-TYPE" "SLC22A6 WILD-TYPE" "SLC22A6 WILD-TYPE" "SLC22A6 WILD-TYPE" 
       TCGA-91-6828        TCGA-91-6829        TCGA-91-6831        TCGA-91-6835 
"SLC22A6 WILD-TYPE" "SLC22A6 WILD-TYPE" "SLC22A6 WILD-TYPE" "SLC22A6 WILD-TYPE" 
       TCGA-91-6836 
"SLC22A6 WILD-TYPE" 
       TCGA-05-4249        TCGA-05-4250        TCGA-05-4382        TCGA-05-4384 
"SLC22A6 WILD-TYPE" "SLC22A6 WILD-TYPE" "SLC22A6 WILD-TYPE" "SLC22A6 WILD-TYPE" 
       TCGA-05-4390        TCGA-05-4396        TCGA-05-4397        TCGA-05-4398 
"SLC22A6 WILD-TYPE" "SLC22A6 WILD-TYPE" "SLC22A6 WILD-TYPE" "SLC22A6 WILD-TYPE" 
       TCGA-05-4402        TCGA-05-4405        TCGA-05-4415        TCGA-05-4417 
"SLC22A6 WILD-TYPE" "SLC22A6 WILD-TYPE" "SLC22A6 WILD-TYPE" "SLC22A6 WILD-TYPE" 
       TCGA-05-4418        TCGA-05-4420        TCGA-05-4424        TCGA-05-4426 
"SLC22A6 WILD-TYPE" "SLC22A6 WILD-TYPE" "SLC22A6 WILD-TYPE" "SLC22A6 WILD-TYPE" 
       TCGA-05-4427        TCGA-05-4430        TCGA-05-4432        TCGA-05-4433 
"SLC22A6 WILD-TYPE" "SLC22A6 WILD-TYPE" "SLC22A6 WILD-TYPE" "SLC22A6 WILD-TYPE" 
       TCGA-05-4434        TCGA-05-5420        TCGA-05-5423        TCGA-05-5425 
  "SLC22A6 MUTATED" "SLC22A6 WILD-TYPE" "SLC22A6 WILD-TYPE" "SLC22A6 WILD-TYPE" 
       TCGA-05-5429        TCGA-05-5715        TCGA-35-3615        TCGA-35-4122 
"SLC22A6 WILD-TYPE" "SLC22A6 WILD-TYPE" "SLC22A6 WILD-TYPE" "SLC22A6 WILD-TYPE" 
       TCGA-35-4123        TCGA-35-5375        TCGA-38-4625        TCGA-38-4626 
  "SLC22A6 MUTATED" "SLC22A6 WILD-TYPE" "SLC22A6 WILD-TYPE" "SLC22A6 WILD-TYPE" 
       TCGA-38-4627        TCGA-38-4628        TCGA-38-4629        TCGA-38-4630 
"SLC22A6 WILD-TYPE" "SLC22A6 WILD-TYPE" "SLC22A6 WILD-TYPE" "SLC22A6 WILD-TYPE" 
       TCGA-38-4631        TCGA-38-4632        TCGA-38-6178        TCGA-44-2655 
"SLC22A6 WILD-TYPE" "SLC22A6 WILD-TYPE" "SLC22A6 WILD-TYPE" "SLC22A6 WILD-TYPE" 
       TCGA-44-2656        TCGA-44-2657        TCGA-44-2659        TCGA-44-2661 
  "SLC22A6 MUTATED" "SLC22A6 WILD-TYPE" "SLC22A6 WILD-TYPE" "SLC22A6 WILD-TYPE" 
       TCGA-44-2662        TCGA-44-2665        TCGA-44-2666        TCGA-44-2668 
"SLC22A6 WILD-TYPE" "SLC22A6 WILD-TYPE"   "SLC22A6 MUTATED" "SLC22A6 WILD-TYPE" 
       TCGA-44-3396        TCGA-44-3398        TCGA-44-3918        TCGA-44-3919 
"SLC22A6 WILD-TYPE" "SLC22A6 WILD-TYPE" "SLC22A6 WILD-TYPE" "SLC22A6 WILD-TYPE" 
       TCGA-44-4112        TCGA-44-5643        TCGA-44-5645        TCGA-44-6144 
"SLC22A6 WILD-TYPE" "SLC22A6 WILD-TYPE" "SLC22A6 WILD-TYPE" "SLC22A6 WILD-TYPE" 
       TCGA-44-6145        TCGA-44-6146        TCGA-44-6147        TCGA-44-6148 
"SLC22A6 WILD-TYPE" "SLC22A6 WILD-TYPE" "SLC22A6 WILD-TYPE" "SLC22A6 WILD-TYPE" 
       TCGA-44-6774        TCGA-44-6775        TCGA-44-6776        TCGA-44-6777 
"SLC22A6 WILD-TYPE"   "SLC22A6 MUTATED" "SLC22A6 WILD-TYPE" "SLC22A6 WILD-TYPE" 
       TCGA-44-6778        TCGA-44-6779        TCGA-49-4486        TCGA-49-4487 
"SLC22A6 WILD-TYPE" "SLC22A6 WILD-TYPE" "SLC22A6 WILD-TYPE" "SLC22A6 WILD-TYPE" 
       TCGA-49-4488        TCGA-49-4490        TCGA-49-4494        TCGA-49-4501 
"SLC22A6 WILD-TYPE" "SLC22A6 WILD-TYPE" "SLC22A6 WILD-TYPE" "SLC22A6 WILD-TYPE" 
       TCGA-49-4505        TCGA-49-4506        TCGA-49-4507        TCGA-49-4510 
"SLC22A6 WILD-TYPE" "SLC22A6 WILD-TYPE" "SLC22A6 WILD-TYPE" "SLC22A6 WILD-TYPE" 
       TCGA-49-4512        TCGA-49-4514        TCGA-49-6742        TCGA-49-6743 
"SLC22A6 WILD-TYPE" "SLC22A6 WILD-TYPE" "SLC22A6 WILD-TYPE" "SLC22A6 WILD-TYPE" 
       TCGA-49-6744        TCGA-49-6745        TCGA-50-5044        TCGA-50-5045 
"SLC22A6 WILD-TYPE" "SLC22A6 WILD-TYPE" "SLC22A6 WILD-TYPE" "SLC22A6 WILD-TYPE" 
       TCGA-50-5049        TCGA-50-5051        TCGA-50-5055        TCGA-50-5066 
"SLC22A6 WILD-TYPE" "SLC22A6 WILD-TYPE" "SLC22A6 WILD-TYPE" "SLC22A6 WILD-TYPE" 
       TCGA-50-5068        TCGA-50-5072        TCGA-50-5930        TCGA-50-5931 
"SLC22A6 WILD-TYPE" "SLC22A6 WILD-TYPE" "SLC22A6 WILD-TYPE" "SLC22A6 WILD-TYPE" 
       TCGA-50-5932        TCGA-50-5933        TCGA-50-5935        TCGA-50-5936 
"SLC22A6 WILD-TYPE" "SLC22A6 WILD-TYPE" "SLC22A6 WILD-TYPE" "SLC22A6 WILD-TYPE" 
       TCGA-50-5939        TCGA-50-5941        TCGA-50-5942        TCGA-50-5944 
"SLC22A6 WILD-TYPE" "SLC22A6 WILD-TYPE" "SLC22A6 WILD-TYPE" "SLC22A6 WILD-TYPE" 
       TCGA-50-5946        TCGA-50-6590        TCGA-50-6591        TCGA-50-6592 
"SLC22A6 WILD-TYPE" "SLC22A6 WILD-TYPE" "SLC22A6 WILD-TYPE" "SLC22A6 WILD-TYPE" 
       TCGA-50-6593        TCGA-50-6594        TCGA-50-6595        TCGA-50-6597 
"SLC22A6 WILD-TYPE" "SLC22A6 WILD-TYPE" "SLC22A6 WILD-TYPE" "SLC22A6 WILD-TYPE" 
       TCGA-55-1592        TCGA-55-1594        TCGA-55-1595        TCGA-55-1596 
"SLC22A6 WILD-TYPE" "SLC22A6 WILD-TYPE" "SLC22A6 WILD-TYPE" "SLC22A6 WILD-TYPE" 
       TCGA-55-5899        TCGA-55-6543        TCGA-55-6642        TCGA-55-6712 
  "SLC22A6 MUTATED" "SLC22A6 WILD-TYPE" "SLC22A6 WILD-TYPE" "SLC22A6 WILD-TYPE" 
       TCGA-64-1676        TCGA-64-1677        TCGA-64-1678        TCGA-64-1680 
  "SLC22A6 MUTATED" "SLC22A6 WILD-TYPE" "SLC22A6 WILD-TYPE" "SLC22A6 WILD-TYPE" 
       TCGA-64-5774        TCGA-64-5775        TCGA-64-5778        TCGA-64-5779 
"SLC22A6 WILD-TYPE" "SLC22A6 WILD-TYPE" "SLC22A6 WILD-TYPE" "SLC22A6 WILD-TYPE" 
       TCGA-64-5781        TCGA-64-5815        TCGA-67-3770        TCGA-67-3771 
"SLC22A6 WILD-TYPE" "SLC22A6 WILD-TYPE" "SLC22A6 WILD-TYPE"   "SLC22A6 MUTATED" 
       TCGA-67-3772        TCGA-67-3773        TCGA-67-3774        TCGA-67-6215 
"SLC22A6 WILD-TYPE" "SLC22A6 WILD-TYPE" "SLC22A6 WILD-TYPE" "SLC22A6 WILD-TYPE" 
       TCGA-67-6216        TCGA-67-6217        TCGA-71-6725        TCGA-73-4658 
"SLC22A6 WILD-TYPE" "SLC22A6 WILD-TYPE" "SLC22A6 WILD-TYPE" "SLC22A6 WILD-TYPE" 
       TCGA-73-4659        TCGA-73-4662        TCGA-73-4666        TCGA-73-4668 
"SLC22A6 WILD-TYPE" "SLC22A6 WILD-TYPE" "SLC22A6 WILD-TYPE" "SLC22A6 WILD-TYPE" 
       TCGA-73-4670        TCGA-73-4675        TCGA-73-4676        TCGA-73-4677 
"SLC22A6 WILD-TYPE" "SLC22A6 WILD-TYPE" "SLC22A6 WILD-TYPE" "SLC22A6 WILD-TYPE" 
       TCGA-91-6828        TCGA-91-6829        TCGA-91-6831        TCGA-91-6835 
"SLC22A6 WILD-TYPE" "SLC22A6 WILD-TYPE" "SLC22A6 WILD-TYPE" "SLC22A6 WILD-TYPE" 
       TCGA-91-6836 
"SLC22A6 WILD-TYPE" 
       TCGA-05-4249        TCGA-05-4250        TCGA-05-4382        TCGA-05-4384 
"SLC22A6 WILD-TYPE" "SLC22A6 WILD-TYPE" "SLC22A6 WILD-TYPE" "SLC22A6 WILD-TYPE" 
       TCGA-05-4390        TCGA-05-4396        TCGA-05-4397        TCGA-05-4398 
"SLC22A6 WILD-TYPE" "SLC22A6 WILD-TYPE" "SLC22A6 WILD-TYPE" "SLC22A6 WILD-TYPE" 
       TCGA-05-4402        TCGA-05-4405        TCGA-05-4415        TCGA-05-4417 
"SLC22A6 WILD-TYPE" "SLC22A6 WILD-TYPE" "SLC22A6 WILD-TYPE" "SLC22A6 WILD-TYPE" 
       TCGA-05-4418        TCGA-05-4420        TCGA-05-4424        TCGA-05-4426 
"SLC22A6 WILD-TYPE" "SLC22A6 WILD-TYPE" "SLC22A6 WILD-TYPE" "SLC22A6 WILD-TYPE" 
       TCGA-05-4427        TCGA-05-4430        TCGA-05-4432        TCGA-05-4433 
"SLC22A6 WILD-TYPE" "SLC22A6 WILD-TYPE" "SLC22A6 WILD-TYPE" "SLC22A6 WILD-TYPE" 
       TCGA-05-4434        TCGA-05-5420        TCGA-05-5423        TCGA-05-5425 
  "SLC22A6 MUTATED" "SLC22A6 WILD-TYPE" "SLC22A6 WILD-TYPE" "SLC22A6 WILD-TYPE" 
       TCGA-05-5429        TCGA-05-5715        TCGA-35-3615        TCGA-35-4122 
"SLC22A6 WILD-TYPE" "SLC22A6 WILD-TYPE" "SLC22A6 WILD-TYPE" "SLC22A6 WILD-TYPE" 
       TCGA-35-4123        TCGA-35-5375        TCGA-38-4625        TCGA-38-4626 
  "SLC22A6 MUTATED" "SLC22A6 WILD-TYPE" "SLC22A6 WILD-TYPE" "SLC22A6 WILD-TYPE" 
       TCGA-38-4627        TCGA-38-4628        TCGA-38-4629        TCGA-38-4630 
"SLC22A6 WILD-TYPE" "SLC22A6 WILD-TYPE" "SLC22A6 WILD-TYPE" "SLC22A6 WILD-TYPE" 
       TCGA-38-4631        TCGA-38-4632        TCGA-38-6178        TCGA-44-2655 
"SLC22A6 WILD-TYPE" "SLC22A6 WILD-TYPE" "SLC22A6 WILD-TYPE" "SLC22A6 WILD-TYPE" 
       TCGA-44-2656        TCGA-44-2657        TCGA-44-2659        TCGA-44-2661 
  "SLC22A6 MUTATED" "SLC22A6 WILD-TYPE" "SLC22A6 WILD-TYPE" "SLC22A6 WILD-TYPE" 
       TCGA-44-2662        TCGA-44-2665        TCGA-44-2666        TCGA-44-2668 
"SLC22A6 WILD-TYPE" "SLC22A6 WILD-TYPE"   "SLC22A6 MUTATED" "SLC22A6 WILD-TYPE" 
       TCGA-44-3396        TCGA-44-3398        TCGA-44-3918        TCGA-44-3919 
"SLC22A6 WILD-TYPE" "SLC22A6 WILD-TYPE" "SLC22A6 WILD-TYPE" "SLC22A6 WILD-TYPE" 
       TCGA-44-4112        TCGA-44-5643        TCGA-44-5645        TCGA-44-6144 
"SLC22A6 WILD-TYPE" "SLC22A6 WILD-TYPE" "SLC22A6 WILD-TYPE" "SLC22A6 WILD-TYPE" 
       TCGA-44-6145        TCGA-44-6146        TCGA-44-6147        TCGA-44-6148 
"SLC22A6 WILD-TYPE" "SLC22A6 WILD-TYPE" "SLC22A6 WILD-TYPE" "SLC22A6 WILD-TYPE" 
       TCGA-44-6774        TCGA-44-6775        TCGA-44-6776        TCGA-44-6777 
"SLC22A6 WILD-TYPE"   "SLC22A6 MUTATED" "SLC22A6 WILD-TYPE" "SLC22A6 WILD-TYPE" 
       TCGA-44-6778        TCGA-44-6779        TCGA-49-4486        TCGA-49-4487 
"SLC22A6 WILD-TYPE" "SLC22A6 WILD-TYPE" "SLC22A6 WILD-TYPE" "SLC22A6 WILD-TYPE" 
       TCGA-49-4488        TCGA-49-4490        TCGA-49-4494        TCGA-49-4501 
"SLC22A6 WILD-TYPE" "SLC22A6 WILD-TYPE" "SLC22A6 WILD-TYPE" "SLC22A6 WILD-TYPE" 
       TCGA-49-4505        TCGA-49-4506        TCGA-49-4507        TCGA-49-4510 
"SLC22A6 WILD-TYPE" "SLC22A6 WILD-TYPE" "SLC22A6 WILD-TYPE" "SLC22A6 WILD-TYPE" 
       TCGA-49-4512        TCGA-49-4514        TCGA-49-6742        TCGA-49-6743 
"SLC22A6 WILD-TYPE" "SLC22A6 WILD-TYPE" "SLC22A6 WILD-TYPE" "SLC22A6 WILD-TYPE" 
       TCGA-49-6744        TCGA-49-6745        TCGA-50-5044        TCGA-50-5045 
"SLC22A6 WILD-TYPE" "SLC22A6 WILD-TYPE" "SLC22A6 WILD-TYPE" "SLC22A6 WILD-TYPE" 
       TCGA-50-5049        TCGA-50-5051        TCGA-50-5055        TCGA-50-5066 
"SLC22A6 WILD-TYPE" "SLC22A6 WILD-TYPE" "SLC22A6 WILD-TYPE" "SLC22A6 WILD-TYPE" 
       TCGA-50-5068        TCGA-50-5072        TCGA-50-5930        TCGA-50-5931 
"SLC22A6 WILD-TYPE" "SLC22A6 WILD-TYPE" "SLC22A6 WILD-TYPE" "SLC22A6 WILD-TYPE" 
       TCGA-50-5932        TCGA-50-5933        TCGA-50-5935        TCGA-50-5936 
"SLC22A6 WILD-TYPE" "SLC22A6 WILD-TYPE" "SLC22A6 WILD-TYPE" "SLC22A6 WILD-TYPE" 
       TCGA-50-5939        TCGA-50-5941        TCGA-50-5942        TCGA-50-5944 
"SLC22A6 WILD-TYPE" "SLC22A6 WILD-TYPE" "SLC22A6 WILD-TYPE" "SLC22A6 WILD-TYPE" 
       TCGA-50-5946        TCGA-50-6590        TCGA-50-6591        TCGA-50-6592 
"SLC22A6 WILD-TYPE" "SLC22A6 WILD-TYPE" "SLC22A6 WILD-TYPE" "SLC22A6 WILD-TYPE" 
       TCGA-50-6593        TCGA-50-6594        TCGA-50-6595        TCGA-50-6597 
"SLC22A6 WILD-TYPE" "SLC22A6 WILD-TYPE" "SLC22A6 WILD-TYPE" "SLC22A6 WILD-TYPE" 
       TCGA-55-1592        TCGA-55-1594        TCGA-55-1595        TCGA-55-1596 
"SLC22A6 WILD-TYPE" "SLC22A6 WILD-TYPE" "SLC22A6 WILD-TYPE" "SLC22A6 WILD-TYPE" 
       TCGA-55-5899        TCGA-55-6543        TCGA-55-6642        TCGA-55-6712 
  "SLC22A6 MUTATED" "SLC22A6 WILD-TYPE" "SLC22A6 WILD-TYPE" "SLC22A6 WILD-TYPE" 
       TCGA-64-1676        TCGA-64-1677        TCGA-64-1678        TCGA-64-1680 
  "SLC22A6 MUTATED" "SLC22A6 WILD-TYPE" "SLC22A6 WILD-TYPE" "SLC22A6 WILD-TYPE" 
       TCGA-64-5774        TCGA-64-5775        TCGA-64-5778        TCGA-64-5779 
"SLC22A6 WILD-TYPE" "SLC22A6 WILD-TYPE" "SLC22A6 WILD-TYPE" "SLC22A6 WILD-TYPE" 
       TCGA-64-5781        TCGA-64-5815        TCGA-67-3770        TCGA-67-3771 
"SLC22A6 WILD-TYPE" "SLC22A6 WILD-TYPE" "SLC22A6 WILD-TYPE"   "SLC22A6 MUTATED" 
       TCGA-67-3772        TCGA-67-3773        TCGA-67-3774        TCGA-67-6215 
"SLC22A6 WILD-TYPE" "SLC22A6 WILD-TYPE" "SLC22A6 WILD-TYPE" "SLC22A6 WILD-TYPE" 
       TCGA-67-6216        TCGA-67-6217        TCGA-71-6725        TCGA-73-4658 
"SLC22A6 WILD-TYPE" "SLC22A6 WILD-TYPE" "SLC22A6 WILD-TYPE" "SLC22A6 WILD-TYPE" 
       TCGA-73-4659        TCGA-73-4662        TCGA-73-4666        TCGA-73-4668 
"SLC22A6 WILD-TYPE" "SLC22A6 WILD-TYPE" "SLC22A6 WILD-TYPE" "SLC22A6 WILD-TYPE" 
       TCGA-73-4670        TCGA-73-4675        TCGA-73-4676        TCGA-73-4677 
"SLC22A6 WILD-TYPE" "SLC22A6 WILD-TYPE" "SLC22A6 WILD-TYPE" "SLC22A6 WILD-TYPE" 
       TCGA-91-6828        TCGA-91-6829        TCGA-91-6831        TCGA-91-6835 
"SLC22A6 WILD-TYPE" "SLC22A6 WILD-TYPE" "SLC22A6 WILD-TYPE" "SLC22A6 WILD-TYPE" 
       TCGA-91-6836 
"SLC22A6 WILD-TYPE" 
[1] "hr=" "1.1"
D203V2, continuous
D203V3, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  SLC22A6 MUTATED      3    5
  SLC22A6 WILD-TYPE   90   74
        clus
vv       SLC22A6 MUTATED SLC22A6 WILD-TYPE
  FEMALE               3                90
  MALE                 5                74
D203V4, continuous
[1] "Remove cluster labels:" "SLC22A6 MUTATED"       
clus
  SLC22A6 MUTATED SLC22A6 WILD-TYPE 
                1                11 
       TCGA-35-4122        TCGA-35-5375        TCGA-64-1677        TCGA-64-5778 
"SLC22A6 WILD-TYPE" "SLC22A6 WILD-TYPE" "SLC22A6 WILD-TYPE" "SLC22A6 WILD-TYPE" 
       TCGA-71-6725        TCGA-73-4659        TCGA-73-4662        TCGA-73-4666 
"SLC22A6 WILD-TYPE" "SLC22A6 WILD-TYPE" "SLC22A6 WILD-TYPE" "SLC22A6 WILD-TYPE" 
       TCGA-73-4668        TCGA-73-4676        TCGA-75-5122 
"SLC22A6 WILD-TYPE" "SLC22A6 WILD-TYPE" "SLC22A6 WILD-TYPE" 
D203V5, multiclass
D203V6, multiclass
    clus
vv   SLC22A6 MUTATED SLC22A6 WILD-TYPE
  T1               4                37
  T2               3               105
  T3               0                14
  T4               1                 7
D203V7, multiclass
       clus
vv      SLC22A6 MUTATED SLC22A6 WILD-TYPE
  N0                  6                89
  N1                  2                35
  N2+N3               0                35
D203V8, multiclass
    clus
vv   SLC22A6 MUTATED SLC22A6 WILD-TYPE
  M0               6               131
  M1               1                 8
  MX               1                21
D203V9, multiclass
     clus
vv    SLC22A6 MUTATED SLC22A6 WILD-TYPE
  I                 7                81
  II                0                33
  III               0                39
  IV                1                 8
D203V10, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  SLC22A6 MUTATED      0    8
  SLC22A6 WILD-TYPE   16  148
     clus
vv    SLC22A6 MUTATED SLC22A6 WILD-TYPE
  NO                0                16
  YES               8               148
D203V11, continuous
D203V12, continuous
D203V13, multiclass
                                             clus
vv                                            SLC22A6 MUTATED SLC22A6 WILD-TYPE
  CURRENT REFORMED SMOKER FOR < OR = 15 YEARS               4                58
  CURRENT REFORMED SMOKER FOR > 15 YEARS                    0                46
  CURRENT SMOKER                                            4                24
  LIFELONG NON-SMOKER                                       0                24
D203V14, continuous

Clustering(204) Variable = C2ORF51 MUTATION ANALYSIS
D204V1, survival
                   sevent
clus2                0  1
  C2ORF51 MUTATED    3  1
  C2ORF51 WILD-TYPE 96 49
  C2ORF51 MUTATED C2ORF51 WILD-TYPE 
                4               145 
  C2ORF51 MUTATED C2ORF51 WILD-TYPE 
                1                49 
$`C2ORF51 MUTATED`
TCGA-05-4396 TCGA-35-5375 TCGA-38-4625 TCGA-67-6217 
        9.96         8.68        47.61        13.87 

$`C2ORF51 WILD-TYPE`
TCGA-05-4249 TCGA-05-4250 TCGA-05-4382 TCGA-05-4384 TCGA-05-4390 TCGA-05-4397 
       38.07         3.98        19.92        14.01        37.02        24.03 
TCGA-05-4398 TCGA-05-4402 TCGA-05-4405 TCGA-05-4415 TCGA-05-4417 TCGA-05-4418 
       47.05         8.02        20.05         2.96        14.93         8.98 
TCGA-05-4420 TCGA-05-4424 TCGA-05-4426 TCGA-05-4427 TCGA-05-4430 TCGA-05-4432 
       29.95        30.02        26.01        26.01        25.02        25.02 
TCGA-05-4433 TCGA-05-4434 TCGA-05-5420 TCGA-05-5423 TCGA-05-5425 TCGA-05-5429 
       24.00        15.02         1.02         4.96         2.96         0.99 
TCGA-05-5715 TCGA-35-3615 TCGA-35-4122 TCGA-35-4123 TCGA-38-4626 TCGA-38-4627 
        2.04         0.46         7.36         5.95        85.32        37.71 
TCGA-38-4628 TCGA-38-4629 TCGA-38-4630 TCGA-38-4631 TCGA-38-4632 TCGA-38-6178 
       49.02        28.37        35.28        11.64        44.61         5.19 
TCGA-44-2655 TCGA-44-2656 TCGA-44-2657 TCGA-44-2659 TCGA-44-2661 TCGA-44-2662 
       18.87        19.10        13.15        17.39         3.39        15.78 
TCGA-44-2665 TCGA-44-2666 TCGA-44-2668 TCGA-44-3396 TCGA-44-3398 TCGA-44-3918 
       13.15         3.19         8.09        10.22         8.32         6.44 
TCGA-44-3919 TCGA-44-4112 TCGA-44-5643 TCGA-44-5645 TCGA-44-6144 TCGA-44-6145 
        6.21         4.60         3.48         6.84         0.30         3.35 
TCGA-44-6146 TCGA-44-6147 TCGA-44-6148 TCGA-44-6774 TCGA-44-6775 TCGA-44-6776 
        9.93         7.76         3.12         5.42         2.70        63.72 
TCGA-44-6777 TCGA-44-6778 TCGA-44-6779 TCGA-49-4486 TCGA-49-4487 TCGA-49-4488 
       32.45        36.49        16.41        76.21        28.11        28.57 
TCGA-49-4490 TCGA-49-4494 TCGA-49-4501 TCGA-49-4505 TCGA-49-4506 TCGA-49-4507 
       12.66        35.54        46.72        14.07        32.84         8.81 
TCGA-49-4510 TCGA-49-4512 TCGA-49-4514 TCGA-49-6742 TCGA-49-6743 TCGA-49-6744 
       29.46        29.75        43.20        15.02        12.13        12.99 
TCGA-49-6745 TCGA-50-5044 TCGA-50-5045 TCGA-50-5049 TCGA-50-5051 TCGA-50-5055 
        4.93        20.48        71.47        48.82        14.96        25.81 
TCGA-50-5066 TCGA-50-5068 TCGA-50-5072 TCGA-50-5930 TCGA-50-5931 TCGA-50-5932 
        9.76        49.28         8.05         9.27         8.78        35.87 
TCGA-50-5933 TCGA-50-5935 TCGA-50-5936 TCGA-50-5939 TCGA-50-5941 TCGA-50-5942 
       77.88        21.47         8.45        15.12         9.37         4.44 
TCGA-50-5944 TCGA-50-5946 TCGA-50-6590 TCGA-50-6591 TCGA-50-6592 TCGA-50-6593 
       12.26        11.47        42.31         3.88        25.51        11.05 
TCGA-50-6594 TCGA-50-6595 TCGA-50-6597 TCGA-55-1592 TCGA-55-1594 TCGA-55-1595 
       12.16         6.21        33.37        23.05        38.73        48.62 
TCGA-55-1596 TCGA-55-5899 TCGA-55-6543 TCGA-55-6642 TCGA-55-6712 TCGA-64-1676 
       45.17         2.86         0.07        32.61         0.79        56.81 
TCGA-64-1677 TCGA-64-1678 TCGA-64-1680 TCGA-64-5774 TCGA-64-5775 TCGA-64-5778 
       20.65        39.09        37.02        83.84         0.10        30.44 
TCGA-64-5779 TCGA-64-5781 TCGA-64-5815 TCGA-67-3770 TCGA-67-3771 TCGA-67-3772 
       16.67        39.52         7.33         0.99         1.97         0.59 
TCGA-67-3773 TCGA-67-3774 TCGA-67-6215 TCGA-67-6216 TCGA-71-6725 TCGA-73-4658 
        2.04         0.59         0.89         0.69         2.01        52.57 
TCGA-73-4659 TCGA-73-4662 TCGA-73-4666 TCGA-73-4668 TCGA-73-4670 TCGA-73-4675 
       23.38        29.95        20.28        15.35         0.46         1.32 
TCGA-73-4676 TCGA-73-4677 TCGA-91-6828 TCGA-91-6829 TCGA-91-6831 TCGA-91-6835 
        4.01         1.25         1.22        41.33         1.28         1.15 
TCGA-91-6836 
        0.36 

  C2ORF51 MUTATED C2ORF51 WILD-TYPE 
             8.68              0.07 
  C2ORF51 MUTATED C2ORF51 WILD-TYPE 
            47.61             85.32 
  C2ORF51 MUTATED C2ORF51 WILD-TYPE 
           11.915            14.010 
[1] "8.7 - 47.6 (11.9)" "0.1 - 85.3 (14.0)"
       TCGA-05-4249        TCGA-05-4250        TCGA-05-4382        TCGA-05-4384 
"C2ORF51 WILD-TYPE" "C2ORF51 WILD-TYPE" "C2ORF51 WILD-TYPE" "C2ORF51 WILD-TYPE" 
       TCGA-05-4390        TCGA-05-4396        TCGA-05-4397        TCGA-05-4398 
"C2ORF51 WILD-TYPE"   "C2ORF51 MUTATED" "C2ORF51 WILD-TYPE" "C2ORF51 WILD-TYPE" 
       TCGA-05-4402        TCGA-05-4405        TCGA-05-4415        TCGA-05-4417 
"C2ORF51 WILD-TYPE" "C2ORF51 WILD-TYPE" "C2ORF51 WILD-TYPE" "C2ORF51 WILD-TYPE" 
       TCGA-05-4418        TCGA-05-4420        TCGA-05-4424        TCGA-05-4426 
"C2ORF51 WILD-TYPE" "C2ORF51 WILD-TYPE" "C2ORF51 WILD-TYPE" "C2ORF51 WILD-TYPE" 
       TCGA-05-4427        TCGA-05-4430        TCGA-05-4432        TCGA-05-4433 
"C2ORF51 WILD-TYPE" "C2ORF51 WILD-TYPE" "C2ORF51 WILD-TYPE" "C2ORF51 WILD-TYPE" 
       TCGA-05-4434        TCGA-05-5420        TCGA-05-5423        TCGA-05-5425 
"C2ORF51 WILD-TYPE" "C2ORF51 WILD-TYPE" "C2ORF51 WILD-TYPE" "C2ORF51 WILD-TYPE" 
       TCGA-05-5429        TCGA-05-5715        TCGA-35-3615        TCGA-35-4122 
"C2ORF51 WILD-TYPE" "C2ORF51 WILD-TYPE" "C2ORF51 WILD-TYPE" "C2ORF51 WILD-TYPE" 
       TCGA-35-4123        TCGA-35-5375        TCGA-38-4625        TCGA-38-4626 
"C2ORF51 WILD-TYPE"   "C2ORF51 MUTATED"   "C2ORF51 MUTATED" "C2ORF51 WILD-TYPE" 
       TCGA-38-4627        TCGA-38-4628        TCGA-38-4629        TCGA-38-4630 
"C2ORF51 WILD-TYPE" "C2ORF51 WILD-TYPE" "C2ORF51 WILD-TYPE" "C2ORF51 WILD-TYPE" 
       TCGA-38-4631        TCGA-38-4632        TCGA-38-6178        TCGA-44-2655 
"C2ORF51 WILD-TYPE" "C2ORF51 WILD-TYPE" "C2ORF51 WILD-TYPE" "C2ORF51 WILD-TYPE" 
       TCGA-44-2656        TCGA-44-2657        TCGA-44-2659        TCGA-44-2661 
"C2ORF51 WILD-TYPE" "C2ORF51 WILD-TYPE" "C2ORF51 WILD-TYPE" "C2ORF51 WILD-TYPE" 
       TCGA-44-2662        TCGA-44-2665        TCGA-44-2666        TCGA-44-2668 
"C2ORF51 WILD-TYPE" "C2ORF51 WILD-TYPE" "C2ORF51 WILD-TYPE" "C2ORF51 WILD-TYPE" 
       TCGA-44-3396        TCGA-44-3398        TCGA-44-3918        TCGA-44-3919 
"C2ORF51 WILD-TYPE" "C2ORF51 WILD-TYPE" "C2ORF51 WILD-TYPE" "C2ORF51 WILD-TYPE" 
       TCGA-44-4112        TCGA-44-5643        TCGA-44-5645        TCGA-44-6144 
"C2ORF51 WILD-TYPE" "C2ORF51 WILD-TYPE" "C2ORF51 WILD-TYPE" "C2ORF51 WILD-TYPE" 
       TCGA-44-6145        TCGA-44-6146        TCGA-44-6147        TCGA-44-6148 
"C2ORF51 WILD-TYPE" "C2ORF51 WILD-TYPE" "C2ORF51 WILD-TYPE" "C2ORF51 WILD-TYPE" 
       TCGA-44-6774        TCGA-44-6775        TCGA-44-6776        TCGA-44-6777 
"C2ORF51 WILD-TYPE" "C2ORF51 WILD-TYPE" "C2ORF51 WILD-TYPE" "C2ORF51 WILD-TYPE" 
       TCGA-44-6778        TCGA-44-6779        TCGA-49-4486        TCGA-49-4487 
"C2ORF51 WILD-TYPE" "C2ORF51 WILD-TYPE" "C2ORF51 WILD-TYPE" "C2ORF51 WILD-TYPE" 
       TCGA-49-4488        TCGA-49-4490        TCGA-49-4494        TCGA-49-4501 
"C2ORF51 WILD-TYPE" "C2ORF51 WILD-TYPE" "C2ORF51 WILD-TYPE" "C2ORF51 WILD-TYPE" 
       TCGA-49-4505        TCGA-49-4506        TCGA-49-4507        TCGA-49-4510 
"C2ORF51 WILD-TYPE" "C2ORF51 WILD-TYPE" "C2ORF51 WILD-TYPE" "C2ORF51 WILD-TYPE" 
       TCGA-49-4512        TCGA-49-4514        TCGA-49-6742        TCGA-49-6743 
"C2ORF51 WILD-TYPE" "C2ORF51 WILD-TYPE" "C2ORF51 WILD-TYPE" "C2ORF51 WILD-TYPE" 
       TCGA-49-6744        TCGA-49-6745        TCGA-50-5044        TCGA-50-5045 
"C2ORF51 WILD-TYPE" "C2ORF51 WILD-TYPE" "C2ORF51 WILD-TYPE" "C2ORF51 WILD-TYPE" 
       TCGA-50-5049        TCGA-50-5051        TCGA-50-5055        TCGA-50-5066 
"C2ORF51 WILD-TYPE" "C2ORF51 WILD-TYPE" "C2ORF51 WILD-TYPE" "C2ORF51 WILD-TYPE" 
       TCGA-50-5068        TCGA-50-5072        TCGA-50-5930        TCGA-50-5931 
"C2ORF51 WILD-TYPE" "C2ORF51 WILD-TYPE" "C2ORF51 WILD-TYPE" "C2ORF51 WILD-TYPE" 
       TCGA-50-5932        TCGA-50-5933        TCGA-50-5935        TCGA-50-5936 
"C2ORF51 WILD-TYPE" "C2ORF51 WILD-TYPE" "C2ORF51 WILD-TYPE" "C2ORF51 WILD-TYPE" 
       TCGA-50-5939        TCGA-50-5941        TCGA-50-5942        TCGA-50-5944 
"C2ORF51 WILD-TYPE" "C2ORF51 WILD-TYPE" "C2ORF51 WILD-TYPE" "C2ORF51 WILD-TYPE" 
       TCGA-50-5946        TCGA-50-6590        TCGA-50-6591        TCGA-50-6592 
"C2ORF51 WILD-TYPE" "C2ORF51 WILD-TYPE" "C2ORF51 WILD-TYPE" "C2ORF51 WILD-TYPE" 
       TCGA-50-6593        TCGA-50-6594        TCGA-50-6595        TCGA-50-6597 
"C2ORF51 WILD-TYPE" "C2ORF51 WILD-TYPE" "C2ORF51 WILD-TYPE" "C2ORF51 WILD-TYPE" 
       TCGA-55-1592        TCGA-55-1594        TCGA-55-1595        TCGA-55-1596 
"C2ORF51 WILD-TYPE" "C2ORF51 WILD-TYPE" "C2ORF51 WILD-TYPE" "C2ORF51 WILD-TYPE" 
       TCGA-55-5899        TCGA-55-6543        TCGA-55-6642        TCGA-55-6712 
"C2ORF51 WILD-TYPE" "C2ORF51 WILD-TYPE" "C2ORF51 WILD-TYPE" "C2ORF51 WILD-TYPE" 
       TCGA-64-1676        TCGA-64-1677        TCGA-64-1678        TCGA-64-1680 
"C2ORF51 WILD-TYPE" "C2ORF51 WILD-TYPE" "C2ORF51 WILD-TYPE" "C2ORF51 WILD-TYPE" 
       TCGA-64-5774        TCGA-64-5775        TCGA-64-5778        TCGA-64-5779 
"C2ORF51 WILD-TYPE" "C2ORF51 WILD-TYPE" "C2ORF51 WILD-TYPE" "C2ORF51 WILD-TYPE" 
       TCGA-64-5781        TCGA-64-5815        TCGA-67-3770        TCGA-67-3771 
"C2ORF51 WILD-TYPE" "C2ORF51 WILD-TYPE" "C2ORF51 WILD-TYPE" "C2ORF51 WILD-TYPE" 
       TCGA-67-3772        TCGA-67-3773        TCGA-67-3774        TCGA-67-6215 
"C2ORF51 WILD-TYPE" "C2ORF51 WILD-TYPE" "C2ORF51 WILD-TYPE" "C2ORF51 WILD-TYPE" 
       TCGA-67-6216        TCGA-67-6217        TCGA-71-6725        TCGA-73-4658 
"C2ORF51 WILD-TYPE"   "C2ORF51 MUTATED" "C2ORF51 WILD-TYPE" "C2ORF51 WILD-TYPE" 
       TCGA-73-4659        TCGA-73-4662        TCGA-73-4666        TCGA-73-4668 
"C2ORF51 WILD-TYPE" "C2ORF51 WILD-TYPE" "C2ORF51 WILD-TYPE" "C2ORF51 WILD-TYPE" 
       TCGA-73-4670        TCGA-73-4675        TCGA-73-4676        TCGA-73-4677 
"C2ORF51 WILD-TYPE" "C2ORF51 WILD-TYPE" "C2ORF51 WILD-TYPE" "C2ORF51 WILD-TYPE" 
       TCGA-91-6828        TCGA-91-6829        TCGA-91-6831        TCGA-91-6835 
"C2ORF51 WILD-TYPE" "C2ORF51 WILD-TYPE" "C2ORF51 WILD-TYPE" "C2ORF51 WILD-TYPE" 
       TCGA-91-6836 
"C2ORF51 WILD-TYPE" 
       TCGA-05-4249        TCGA-05-4250        TCGA-05-4382        TCGA-05-4384 
"C2ORF51 WILD-TYPE" "C2ORF51 WILD-TYPE" "C2ORF51 WILD-TYPE" "C2ORF51 WILD-TYPE" 
       TCGA-05-4390        TCGA-05-4396        TCGA-05-4397        TCGA-05-4398 
"C2ORF51 WILD-TYPE"   "C2ORF51 MUTATED" "C2ORF51 WILD-TYPE" "C2ORF51 WILD-TYPE" 
       TCGA-05-4402        TCGA-05-4405        TCGA-05-4415        TCGA-05-4417 
"C2ORF51 WILD-TYPE" "C2ORF51 WILD-TYPE" "C2ORF51 WILD-TYPE" "C2ORF51 WILD-TYPE" 
       TCGA-05-4418        TCGA-05-4420        TCGA-05-4424        TCGA-05-4426 
"C2ORF51 WILD-TYPE" "C2ORF51 WILD-TYPE" "C2ORF51 WILD-TYPE" "C2ORF51 WILD-TYPE" 
       TCGA-05-4427        TCGA-05-4430        TCGA-05-4432        TCGA-05-4433 
"C2ORF51 WILD-TYPE" "C2ORF51 WILD-TYPE" "C2ORF51 WILD-TYPE" "C2ORF51 WILD-TYPE" 
       TCGA-05-4434        TCGA-05-5420        TCGA-05-5423        TCGA-05-5425 
"C2ORF51 WILD-TYPE" "C2ORF51 WILD-TYPE" "C2ORF51 WILD-TYPE" "C2ORF51 WILD-TYPE" 
       TCGA-05-5429        TCGA-05-5715        TCGA-35-3615        TCGA-35-4122 
"C2ORF51 WILD-TYPE" "C2ORF51 WILD-TYPE" "C2ORF51 WILD-TYPE" "C2ORF51 WILD-TYPE" 
       TCGA-35-4123        TCGA-35-5375        TCGA-38-4625        TCGA-38-4626 
"C2ORF51 WILD-TYPE"   "C2ORF51 MUTATED"   "C2ORF51 MUTATED" "C2ORF51 WILD-TYPE" 
       TCGA-38-4627        TCGA-38-4628        TCGA-38-4629        TCGA-38-4630 
"C2ORF51 WILD-TYPE" "C2ORF51 WILD-TYPE" "C2ORF51 WILD-TYPE" "C2ORF51 WILD-TYPE" 
       TCGA-38-4631        TCGA-38-4632        TCGA-38-6178        TCGA-44-2655 
"C2ORF51 WILD-TYPE" "C2ORF51 WILD-TYPE" "C2ORF51 WILD-TYPE" "C2ORF51 WILD-TYPE" 
       TCGA-44-2656        TCGA-44-2657        TCGA-44-2659        TCGA-44-2661 
"C2ORF51 WILD-TYPE" "C2ORF51 WILD-TYPE" "C2ORF51 WILD-TYPE" "C2ORF51 WILD-TYPE" 
       TCGA-44-2662        TCGA-44-2665        TCGA-44-2666        TCGA-44-2668 
"C2ORF51 WILD-TYPE" "C2ORF51 WILD-TYPE" "C2ORF51 WILD-TYPE" "C2ORF51 WILD-TYPE" 
       TCGA-44-3396        TCGA-44-3398        TCGA-44-3918        TCGA-44-3919 
"C2ORF51 WILD-TYPE" "C2ORF51 WILD-TYPE" "C2ORF51 WILD-TYPE" "C2ORF51 WILD-TYPE" 
       TCGA-44-4112        TCGA-44-5643        TCGA-44-5645        TCGA-44-6144 
"C2ORF51 WILD-TYPE" "C2ORF51 WILD-TYPE" "C2ORF51 WILD-TYPE" "C2ORF51 WILD-TYPE" 
       TCGA-44-6145        TCGA-44-6146        TCGA-44-6147        TCGA-44-6148 
"C2ORF51 WILD-TYPE" "C2ORF51 WILD-TYPE" "C2ORF51 WILD-TYPE" "C2ORF51 WILD-TYPE" 
       TCGA-44-6774        TCGA-44-6775        TCGA-44-6776        TCGA-44-6777 
"C2ORF51 WILD-TYPE" "C2ORF51 WILD-TYPE" "C2ORF51 WILD-TYPE" "C2ORF51 WILD-TYPE" 
       TCGA-44-6778        TCGA-44-6779        TCGA-49-4486        TCGA-49-4487 
"C2ORF51 WILD-TYPE" "C2ORF51 WILD-TYPE" "C2ORF51 WILD-TYPE" "C2ORF51 WILD-TYPE" 
       TCGA-49-4488        TCGA-49-4490        TCGA-49-4494        TCGA-49-4501 
"C2ORF51 WILD-TYPE" "C2ORF51 WILD-TYPE" "C2ORF51 WILD-TYPE" "C2ORF51 WILD-TYPE" 
       TCGA-49-4505        TCGA-49-4506        TCGA-49-4507        TCGA-49-4510 
"C2ORF51 WILD-TYPE" "C2ORF51 WILD-TYPE" "C2ORF51 WILD-TYPE" "C2ORF51 WILD-TYPE" 
       TCGA-49-4512        TCGA-49-4514        TCGA-49-6742        TCGA-49-6743 
"C2ORF51 WILD-TYPE" "C2ORF51 WILD-TYPE" "C2ORF51 WILD-TYPE" "C2ORF51 WILD-TYPE" 
       TCGA-49-6744        TCGA-49-6745        TCGA-50-5044        TCGA-50-5045 
"C2ORF51 WILD-TYPE" "C2ORF51 WILD-TYPE" "C2ORF51 WILD-TYPE" "C2ORF51 WILD-TYPE" 
       TCGA-50-5049        TCGA-50-5051        TCGA-50-5055        TCGA-50-5066 
"C2ORF51 WILD-TYPE" "C2ORF51 WILD-TYPE" "C2ORF51 WILD-TYPE" "C2ORF51 WILD-TYPE" 
       TCGA-50-5068        TCGA-50-5072        TCGA-50-5930        TCGA-50-5931 
"C2ORF51 WILD-TYPE" "C2ORF51 WILD-TYPE" "C2ORF51 WILD-TYPE" "C2ORF51 WILD-TYPE" 
       TCGA-50-5932        TCGA-50-5933        TCGA-50-5935        TCGA-50-5936 
"C2ORF51 WILD-TYPE" "C2ORF51 WILD-TYPE" "C2ORF51 WILD-TYPE" "C2ORF51 WILD-TYPE" 
       TCGA-50-5939        TCGA-50-5941        TCGA-50-5942        TCGA-50-5944 
"C2ORF51 WILD-TYPE" "C2ORF51 WILD-TYPE" "C2ORF51 WILD-TYPE" "C2ORF51 WILD-TYPE" 
       TCGA-50-5946        TCGA-50-6590        TCGA-50-6591        TCGA-50-6592 
"C2ORF51 WILD-TYPE" "C2ORF51 WILD-TYPE" "C2ORF51 WILD-TYPE" "C2ORF51 WILD-TYPE" 
       TCGA-50-6593        TCGA-50-6594        TCGA-50-6595        TCGA-50-6597 
"C2ORF51 WILD-TYPE" "C2ORF51 WILD-TYPE" "C2ORF51 WILD-TYPE" "C2ORF51 WILD-TYPE" 
       TCGA-55-1592        TCGA-55-1594        TCGA-55-1595        TCGA-55-1596 
"C2ORF51 WILD-TYPE" "C2ORF51 WILD-TYPE" "C2ORF51 WILD-TYPE" "C2ORF51 WILD-TYPE" 
       TCGA-55-5899        TCGA-55-6543        TCGA-55-6642        TCGA-55-6712 
"C2ORF51 WILD-TYPE" "C2ORF51 WILD-TYPE" "C2ORF51 WILD-TYPE" "C2ORF51 WILD-TYPE" 
       TCGA-64-1676        TCGA-64-1677        TCGA-64-1678        TCGA-64-1680 
"C2ORF51 WILD-TYPE" "C2ORF51 WILD-TYPE" "C2ORF51 WILD-TYPE" "C2ORF51 WILD-TYPE" 
       TCGA-64-5774        TCGA-64-5775        TCGA-64-5778        TCGA-64-5779 
"C2ORF51 WILD-TYPE" "C2ORF51 WILD-TYPE" "C2ORF51 WILD-TYPE" "C2ORF51 WILD-TYPE" 
       TCGA-64-5781        TCGA-64-5815        TCGA-67-3770        TCGA-67-3771 
"C2ORF51 WILD-TYPE" "C2ORF51 WILD-TYPE" "C2ORF51 WILD-TYPE" "C2ORF51 WILD-TYPE" 
       TCGA-67-3772        TCGA-67-3773        TCGA-67-3774        TCGA-67-6215 
"C2ORF51 WILD-TYPE" "C2ORF51 WILD-TYPE" "C2ORF51 WILD-TYPE" "C2ORF51 WILD-TYPE" 
       TCGA-67-6216        TCGA-67-6217        TCGA-71-6725        TCGA-73-4658 
"C2ORF51 WILD-TYPE"   "C2ORF51 MUTATED" "C2ORF51 WILD-TYPE" "C2ORF51 WILD-TYPE" 
       TCGA-73-4659        TCGA-73-4662        TCGA-73-4666        TCGA-73-4668 
"C2ORF51 WILD-TYPE" "C2ORF51 WILD-TYPE" "C2ORF51 WILD-TYPE" "C2ORF51 WILD-TYPE" 
       TCGA-73-4670        TCGA-73-4675        TCGA-73-4676        TCGA-73-4677 
"C2ORF51 WILD-TYPE" "C2ORF51 WILD-TYPE" "C2ORF51 WILD-TYPE" "C2ORF51 WILD-TYPE" 
       TCGA-91-6828        TCGA-91-6829        TCGA-91-6831        TCGA-91-6835 
"C2ORF51 WILD-TYPE" "C2ORF51 WILD-TYPE" "C2ORF51 WILD-TYPE" "C2ORF51 WILD-TYPE" 
       TCGA-91-6836 
"C2ORF51 WILD-TYPE" 
       TCGA-05-4249        TCGA-05-4250        TCGA-05-4382        TCGA-05-4384 
"C2ORF51 WILD-TYPE" "C2ORF51 WILD-TYPE" "C2ORF51 WILD-TYPE" "C2ORF51 WILD-TYPE" 
       TCGA-05-4390        TCGA-05-4396        TCGA-05-4397        TCGA-05-4398 
"C2ORF51 WILD-TYPE"   "C2ORF51 MUTATED" "C2ORF51 WILD-TYPE" "C2ORF51 WILD-TYPE" 
       TCGA-05-4402        TCGA-05-4405        TCGA-05-4415        TCGA-05-4417 
"C2ORF51 WILD-TYPE" "C2ORF51 WILD-TYPE" "C2ORF51 WILD-TYPE" "C2ORF51 WILD-TYPE" 
       TCGA-05-4418        TCGA-05-4420        TCGA-05-4424        TCGA-05-4426 
"C2ORF51 WILD-TYPE" "C2ORF51 WILD-TYPE" "C2ORF51 WILD-TYPE" "C2ORF51 WILD-TYPE" 
       TCGA-05-4427        TCGA-05-4430        TCGA-05-4432        TCGA-05-4433 
"C2ORF51 WILD-TYPE" "C2ORF51 WILD-TYPE" "C2ORF51 WILD-TYPE" "C2ORF51 WILD-TYPE" 
       TCGA-05-4434        TCGA-05-5420        TCGA-05-5423        TCGA-05-5425 
"C2ORF51 WILD-TYPE" "C2ORF51 WILD-TYPE" "C2ORF51 WILD-TYPE" "C2ORF51 WILD-TYPE" 
       TCGA-05-5429        TCGA-05-5715        TCGA-35-3615        TCGA-35-4122 
"C2ORF51 WILD-TYPE" "C2ORF51 WILD-TYPE" "C2ORF51 WILD-TYPE" "C2ORF51 WILD-TYPE" 
       TCGA-35-4123        TCGA-35-5375        TCGA-38-4625        TCGA-38-4626 
"C2ORF51 WILD-TYPE"   "C2ORF51 MUTATED"   "C2ORF51 MUTATED" "C2ORF51 WILD-TYPE" 
       TCGA-38-4627        TCGA-38-4628        TCGA-38-4629        TCGA-38-4630 
"C2ORF51 WILD-TYPE" "C2ORF51 WILD-TYPE" "C2ORF51 WILD-TYPE" "C2ORF51 WILD-TYPE" 
       TCGA-38-4631        TCGA-38-4632        TCGA-38-6178        TCGA-44-2655 
"C2ORF51 WILD-TYPE" "C2ORF51 WILD-TYPE" "C2ORF51 WILD-TYPE" "C2ORF51 WILD-TYPE" 
       TCGA-44-2656        TCGA-44-2657        TCGA-44-2659        TCGA-44-2661 
"C2ORF51 WILD-TYPE" "C2ORF51 WILD-TYPE" "C2ORF51 WILD-TYPE" "C2ORF51 WILD-TYPE" 
       TCGA-44-2662        TCGA-44-2665        TCGA-44-2666        TCGA-44-2668 
"C2ORF51 WILD-TYPE" "C2ORF51 WILD-TYPE" "C2ORF51 WILD-TYPE" "C2ORF51 WILD-TYPE" 
       TCGA-44-3396        TCGA-44-3398        TCGA-44-3918        TCGA-44-3919 
"C2ORF51 WILD-TYPE" "C2ORF51 WILD-TYPE" "C2ORF51 WILD-TYPE" "C2ORF51 WILD-TYPE" 
       TCGA-44-4112        TCGA-44-5643        TCGA-44-5645        TCGA-44-6144 
"C2ORF51 WILD-TYPE" "C2ORF51 WILD-TYPE" "C2ORF51 WILD-TYPE" "C2ORF51 WILD-TYPE" 
       TCGA-44-6145        TCGA-44-6146        TCGA-44-6147        TCGA-44-6148 
"C2ORF51 WILD-TYPE" "C2ORF51 WILD-TYPE" "C2ORF51 WILD-TYPE" "C2ORF51 WILD-TYPE" 
       TCGA-44-6774        TCGA-44-6775        TCGA-44-6776        TCGA-44-6777 
"C2ORF51 WILD-TYPE" "C2ORF51 WILD-TYPE" "C2ORF51 WILD-TYPE" "C2ORF51 WILD-TYPE" 
       TCGA-44-6778        TCGA-44-6779        TCGA-49-4486        TCGA-49-4487 
"C2ORF51 WILD-TYPE" "C2ORF51 WILD-TYPE" "C2ORF51 WILD-TYPE" "C2ORF51 WILD-TYPE" 
       TCGA-49-4488        TCGA-49-4490        TCGA-49-4494        TCGA-49-4501 
"C2ORF51 WILD-TYPE" "C2ORF51 WILD-TYPE" "C2ORF51 WILD-TYPE" "C2ORF51 WILD-TYPE" 
       TCGA-49-4505        TCGA-49-4506        TCGA-49-4507        TCGA-49-4510 
"C2ORF51 WILD-TYPE" "C2ORF51 WILD-TYPE" "C2ORF51 WILD-TYPE" "C2ORF51 WILD-TYPE" 
       TCGA-49-4512        TCGA-49-4514        TCGA-49-6742        TCGA-49-6743 
"C2ORF51 WILD-TYPE" "C2ORF51 WILD-TYPE" "C2ORF51 WILD-TYPE" "C2ORF51 WILD-TYPE" 
       TCGA-49-6744        TCGA-49-6745        TCGA-50-5044        TCGA-50-5045 
"C2ORF51 WILD-TYPE" "C2ORF51 WILD-TYPE" "C2ORF51 WILD-TYPE" "C2ORF51 WILD-TYPE" 
       TCGA-50-5049        TCGA-50-5051        TCGA-50-5055        TCGA-50-5066 
"C2ORF51 WILD-TYPE" "C2ORF51 WILD-TYPE" "C2ORF51 WILD-TYPE" "C2ORF51 WILD-TYPE" 
       TCGA-50-5068        TCGA-50-5072        TCGA-50-5930        TCGA-50-5931 
"C2ORF51 WILD-TYPE" "C2ORF51 WILD-TYPE" "C2ORF51 WILD-TYPE" "C2ORF51 WILD-TYPE" 
       TCGA-50-5932        TCGA-50-5933        TCGA-50-5935        TCGA-50-5936 
"C2ORF51 WILD-TYPE" "C2ORF51 WILD-TYPE" "C2ORF51 WILD-TYPE" "C2ORF51 WILD-TYPE" 
       TCGA-50-5939        TCGA-50-5941        TCGA-50-5942        TCGA-50-5944 
"C2ORF51 WILD-TYPE" "C2ORF51 WILD-TYPE" "C2ORF51 WILD-TYPE" "C2ORF51 WILD-TYPE" 
       TCGA-50-5946        TCGA-50-6590        TCGA-50-6591        TCGA-50-6592 
"C2ORF51 WILD-TYPE" "C2ORF51 WILD-TYPE" "C2ORF51 WILD-TYPE" "C2ORF51 WILD-TYPE" 
       TCGA-50-6593        TCGA-50-6594        TCGA-50-6595        TCGA-50-6597 
"C2ORF51 WILD-TYPE" "C2ORF51 WILD-TYPE" "C2ORF51 WILD-TYPE" "C2ORF51 WILD-TYPE" 
       TCGA-55-1592        TCGA-55-1594        TCGA-55-1595        TCGA-55-1596 
"C2ORF51 WILD-TYPE" "C2ORF51 WILD-TYPE" "C2ORF51 WILD-TYPE" "C2ORF51 WILD-TYPE" 
       TCGA-55-5899        TCGA-55-6543        TCGA-55-6642        TCGA-55-6712 
"C2ORF51 WILD-TYPE" "C2ORF51 WILD-TYPE" "C2ORF51 WILD-TYPE" "C2ORF51 WILD-TYPE" 
       TCGA-64-1676        TCGA-64-1677        TCGA-64-1678        TCGA-64-1680 
"C2ORF51 WILD-TYPE" "C2ORF51 WILD-TYPE" "C2ORF51 WILD-TYPE" "C2ORF51 WILD-TYPE" 
       TCGA-64-5774        TCGA-64-5775        TCGA-64-5778        TCGA-64-5779 
"C2ORF51 WILD-TYPE" "C2ORF51 WILD-TYPE" "C2ORF51 WILD-TYPE" "C2ORF51 WILD-TYPE" 
       TCGA-64-5781        TCGA-64-5815        TCGA-67-3770        TCGA-67-3771 
"C2ORF51 WILD-TYPE" "C2ORF51 WILD-TYPE" "C2ORF51 WILD-TYPE" "C2ORF51 WILD-TYPE" 
       TCGA-67-3772        TCGA-67-3773        TCGA-67-3774        TCGA-67-6215 
"C2ORF51 WILD-TYPE" "C2ORF51 WILD-TYPE" "C2ORF51 WILD-TYPE" "C2ORF51 WILD-TYPE" 
       TCGA-67-6216        TCGA-67-6217        TCGA-71-6725        TCGA-73-4658 
"C2ORF51 WILD-TYPE"   "C2ORF51 MUTATED" "C2ORF51 WILD-TYPE" "C2ORF51 WILD-TYPE" 
       TCGA-73-4659        TCGA-73-4662        TCGA-73-4666        TCGA-73-4668 
"C2ORF51 WILD-TYPE" "C2ORF51 WILD-TYPE" "C2ORF51 WILD-TYPE" "C2ORF51 WILD-TYPE" 
       TCGA-73-4670        TCGA-73-4675        TCGA-73-4676        TCGA-73-4677 
"C2ORF51 WILD-TYPE" "C2ORF51 WILD-TYPE" "C2ORF51 WILD-TYPE" "C2ORF51 WILD-TYPE" 
       TCGA-91-6828        TCGA-91-6829        TCGA-91-6831        TCGA-91-6835 
"C2ORF51 WILD-TYPE" "C2ORF51 WILD-TYPE" "C2ORF51 WILD-TYPE" "C2ORF51 WILD-TYPE" 
       TCGA-91-6836 
"C2ORF51 WILD-TYPE" 
[1] "hr=" "1.3"
D204V2, continuous
D204V3, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  C2ORF51 MUTATED      2    3
  C2ORF51 WILD-TYPE   91   76
        clus
vv       C2ORF51 MUTATED C2ORF51 WILD-TYPE
  FEMALE               2                91
  MALE                 3                76
D204V4, continuous
[1] "Remove cluster labels:" "C2ORF51 MUTATED"       
clus
  C2ORF51 MUTATED C2ORF51 WILD-TYPE 
                1                11 
       TCGA-35-4122        TCGA-35-4123        TCGA-64-1677        TCGA-64-5778 
"C2ORF51 WILD-TYPE" "C2ORF51 WILD-TYPE" "C2ORF51 WILD-TYPE" "C2ORF51 WILD-TYPE" 
       TCGA-71-6725        TCGA-73-4659        TCGA-73-4662        TCGA-73-4666 
"C2ORF51 WILD-TYPE" "C2ORF51 WILD-TYPE" "C2ORF51 WILD-TYPE" "C2ORF51 WILD-TYPE" 
       TCGA-73-4668        TCGA-73-4676        TCGA-75-5122 
"C2ORF51 WILD-TYPE" "C2ORF51 WILD-TYPE" "C2ORF51 WILD-TYPE" 
D204V5, multiclass
D204V6, multiclass
    clus
vv   C2ORF51 MUTATED C2ORF51 WILD-TYPE
  T1               0                41
  T2               4               104
  T3               0                14
  T4               1                 7
D204V7, multiclass
       clus
vv      C2ORF51 MUTATED C2ORF51 WILD-TYPE
  N0                  2                93
  N1                  2                35
  N2+N3               1                34
D204V8, multiclass
    clus
vv   C2ORF51 MUTATED C2ORF51 WILD-TYPE
  M0               5               132
  M1               0                 9
  MX               0                22
D204V9, multiclass
     clus
vv    C2ORF51 MUTATED C2ORF51 WILD-TYPE
  I                 2                86
  II                1                32
  III               2                37
  IV                0                 9
D204V10, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  C2ORF51 MUTATED      0    5
  C2ORF51 WILD-TYPE   16  151
     clus
vv    C2ORF51 MUTATED C2ORF51 WILD-TYPE
  NO                0                16
  YES               5               151
D204V11, continuous
D204V12, continuous
D204V13, multiclass
                                             clus
vv                                            C2ORF51 MUTATED C2ORF51 WILD-TYPE
  CURRENT REFORMED SMOKER FOR < OR = 15 YEARS               2                60
  CURRENT REFORMED SMOKER FOR > 15 YEARS                    2                44
  CURRENT SMOKER                                            1                27
  LIFELONG NON-SMOKER                                       0                24
D204V14, continuous

Clustering(205) Variable = POTEA MUTATION ANALYSIS
D205V1, survival
                 sevent
clus2              0  1
  POTEA MUTATED    6  0
  POTEA WILD-TYPE 93 50
  POTEA MUTATED POTEA WILD-TYPE 
              6             143 
  POTEA MUTATED POTEA WILD-TYPE 
              0              50 
$`POTEA MUTATED`
TCGA-35-4123 TCGA-44-2668 TCGA-44-3918 TCGA-64-5774 TCGA-64-5781 TCGA-67-3772 
        5.95         8.09         6.44        83.84        39.52         0.59 

$`POTEA WILD-TYPE`
TCGA-05-4249 TCGA-05-4250 TCGA-05-4382 TCGA-05-4384 TCGA-05-4390 TCGA-05-4396 
       38.07         3.98        19.92        14.01        37.02         9.96 
TCGA-05-4397 TCGA-05-4398 TCGA-05-4402 TCGA-05-4405 TCGA-05-4415 TCGA-05-4417 
       24.03        47.05         8.02        20.05         2.96        14.93 
TCGA-05-4418 TCGA-05-4420 TCGA-05-4424 TCGA-05-4426 TCGA-05-4427 TCGA-05-4430 
        8.98        29.95        30.02        26.01        26.01        25.02 
TCGA-05-4432 TCGA-05-4433 TCGA-05-4434 TCGA-05-5420 TCGA-05-5423 TCGA-05-5425 
       25.02        24.00        15.02         1.02         4.96         2.96 
TCGA-05-5429 TCGA-05-5715 TCGA-35-3615 TCGA-35-4122 TCGA-35-5375 TCGA-38-4625 
        0.99         2.04         0.46         7.36         8.68        47.61 
TCGA-38-4626 TCGA-38-4627 TCGA-38-4628 TCGA-38-4629 TCGA-38-4630 TCGA-38-4631 
       85.32        37.71        49.02        28.37        35.28        11.64 
TCGA-38-4632 TCGA-38-6178 TCGA-44-2655 TCGA-44-2656 TCGA-44-2657 TCGA-44-2659 
       44.61         5.19        18.87        19.10        13.15        17.39 
TCGA-44-2661 TCGA-44-2662 TCGA-44-2665 TCGA-44-2666 TCGA-44-3396 TCGA-44-3398 
        3.39        15.78        13.15         3.19        10.22         8.32 
TCGA-44-3919 TCGA-44-4112 TCGA-44-5643 TCGA-44-5645 TCGA-44-6144 TCGA-44-6145 
        6.21         4.60         3.48         6.84         0.30         3.35 
TCGA-44-6146 TCGA-44-6147 TCGA-44-6148 TCGA-44-6774 TCGA-44-6775 TCGA-44-6776 
        9.93         7.76         3.12         5.42         2.70        63.72 
TCGA-44-6777 TCGA-44-6778 TCGA-44-6779 TCGA-49-4486 TCGA-49-4487 TCGA-49-4488 
       32.45        36.49        16.41        76.21        28.11        28.57 
TCGA-49-4490 TCGA-49-4494 TCGA-49-4501 TCGA-49-4505 TCGA-49-4506 TCGA-49-4507 
       12.66        35.54        46.72        14.07        32.84         8.81 
TCGA-49-4510 TCGA-49-4512 TCGA-49-4514 TCGA-49-6742 TCGA-49-6743 TCGA-49-6744 
       29.46        29.75        43.20        15.02        12.13        12.99 
TCGA-49-6745 TCGA-50-5044 TCGA-50-5045 TCGA-50-5049 TCGA-50-5051 TCGA-50-5055 
        4.93        20.48        71.47        48.82        14.96        25.81 
TCGA-50-5066 TCGA-50-5068 TCGA-50-5072 TCGA-50-5930 TCGA-50-5931 TCGA-50-5932 
        9.76        49.28         8.05         9.27         8.78        35.87 
TCGA-50-5933 TCGA-50-5935 TCGA-50-5936 TCGA-50-5939 TCGA-50-5941 TCGA-50-5942 
       77.88        21.47         8.45        15.12         9.37         4.44 
TCGA-50-5944 TCGA-50-5946 TCGA-50-6590 TCGA-50-6591 TCGA-50-6592 TCGA-50-6593 
       12.26        11.47        42.31         3.88        25.51        11.05 
TCGA-50-6594 TCGA-50-6595 TCGA-50-6597 TCGA-55-1592 TCGA-55-1594 TCGA-55-1595 
       12.16         6.21        33.37        23.05        38.73        48.62 
TCGA-55-1596 TCGA-55-5899 TCGA-55-6543 TCGA-55-6642 TCGA-55-6712 TCGA-64-1676 
       45.17         2.86         0.07        32.61         0.79        56.81 
TCGA-64-1677 TCGA-64-1678 TCGA-64-1680 TCGA-64-5775 TCGA-64-5778 TCGA-64-5779 
       20.65        39.09        37.02         0.10        30.44        16.67 
TCGA-64-5815 TCGA-67-3770 TCGA-67-3771 TCGA-67-3773 TCGA-67-3774 TCGA-67-6215 
        7.33         0.99         1.97         2.04         0.59         0.89 
TCGA-67-6216 TCGA-67-6217 TCGA-71-6725 TCGA-73-4658 TCGA-73-4659 TCGA-73-4662 
        0.69        13.87         2.01        52.57        23.38        29.95 
TCGA-73-4666 TCGA-73-4668 TCGA-73-4670 TCGA-73-4675 TCGA-73-4676 TCGA-73-4677 
       20.28        15.35         0.46         1.32         4.01         1.25 
TCGA-91-6828 TCGA-91-6829 TCGA-91-6831 TCGA-91-6835 TCGA-91-6836 
        1.22        41.33         1.28         1.15         0.36 

  POTEA MUTATED POTEA WILD-TYPE 
           0.59            0.07 
  POTEA MUTATED POTEA WILD-TYPE 
          83.84           85.32 
  POTEA MUTATED POTEA WILD-TYPE 
          7.265          14.010 
[1] "0.6 - 83.8 (7.3)"  "0.1 - 85.3 (14.0)"
     TCGA-05-4249      TCGA-05-4250      TCGA-05-4382      TCGA-05-4384 
"POTEA WILD-TYPE" "POTEA WILD-TYPE" "POTEA WILD-TYPE" "POTEA WILD-TYPE" 
     TCGA-05-4390      TCGA-05-4396      TCGA-05-4397      TCGA-05-4398 
"POTEA WILD-TYPE" "POTEA WILD-TYPE" "POTEA WILD-TYPE" "POTEA WILD-TYPE" 
     TCGA-05-4402      TCGA-05-4405      TCGA-05-4415      TCGA-05-4417 
"POTEA WILD-TYPE" "POTEA WILD-TYPE" "POTEA WILD-TYPE" "POTEA WILD-TYPE" 
     TCGA-05-4418      TCGA-05-4420      TCGA-05-4424      TCGA-05-4426 
"POTEA WILD-TYPE" "POTEA WILD-TYPE" "POTEA WILD-TYPE" "POTEA WILD-TYPE" 
     TCGA-05-4427      TCGA-05-4430      TCGA-05-4432      TCGA-05-4433 
"POTEA WILD-TYPE" "POTEA WILD-TYPE" "POTEA WILD-TYPE" "POTEA WILD-TYPE" 
     TCGA-05-4434      TCGA-05-5420      TCGA-05-5423      TCGA-05-5425 
"POTEA WILD-TYPE" "POTEA WILD-TYPE" "POTEA WILD-TYPE" "POTEA WILD-TYPE" 
     TCGA-05-5429      TCGA-05-5715      TCGA-35-3615      TCGA-35-4122 
"POTEA WILD-TYPE" "POTEA WILD-TYPE" "POTEA WILD-TYPE" "POTEA WILD-TYPE" 
     TCGA-35-4123      TCGA-35-5375      TCGA-38-4625      TCGA-38-4626 
  "POTEA MUTATED" "POTEA WILD-TYPE" "POTEA WILD-TYPE" "POTEA WILD-TYPE" 
     TCGA-38-4627      TCGA-38-4628      TCGA-38-4629      TCGA-38-4630 
"POTEA WILD-TYPE" "POTEA WILD-TYPE" "POTEA WILD-TYPE" "POTEA WILD-TYPE" 
     TCGA-38-4631      TCGA-38-4632      TCGA-38-6178      TCGA-44-2655 
"POTEA WILD-TYPE" "POTEA WILD-TYPE" "POTEA WILD-TYPE" "POTEA WILD-TYPE" 
     TCGA-44-2656      TCGA-44-2657      TCGA-44-2659      TCGA-44-2661 
"POTEA WILD-TYPE" "POTEA WILD-TYPE" "POTEA WILD-TYPE" "POTEA WILD-TYPE" 
     TCGA-44-2662      TCGA-44-2665      TCGA-44-2666      TCGA-44-2668 
"POTEA WILD-TYPE" "POTEA WILD-TYPE" "POTEA WILD-TYPE"   "POTEA MUTATED" 
     TCGA-44-3396      TCGA-44-3398      TCGA-44-3918      TCGA-44-3919 
"POTEA WILD-TYPE" "POTEA WILD-TYPE"   "POTEA MUTATED" "POTEA WILD-TYPE" 
     TCGA-44-4112      TCGA-44-5643      TCGA-44-5645      TCGA-44-6144 
"POTEA WILD-TYPE" "POTEA WILD-TYPE" "POTEA WILD-TYPE" "POTEA WILD-TYPE" 
     TCGA-44-6145      TCGA-44-6146      TCGA-44-6147      TCGA-44-6148 
"POTEA WILD-TYPE" "POTEA WILD-TYPE" "POTEA WILD-TYPE" "POTEA WILD-TYPE" 
     TCGA-44-6774      TCGA-44-6775      TCGA-44-6776      TCGA-44-6777 
"POTEA WILD-TYPE" "POTEA WILD-TYPE" "POTEA WILD-TYPE" "POTEA WILD-TYPE" 
     TCGA-44-6778      TCGA-44-6779      TCGA-49-4486      TCGA-49-4487 
"POTEA WILD-TYPE" "POTEA WILD-TYPE" "POTEA WILD-TYPE" "POTEA WILD-TYPE" 
     TCGA-49-4488      TCGA-49-4490      TCGA-49-4494      TCGA-49-4501 
"POTEA WILD-TYPE" "POTEA WILD-TYPE" "POTEA WILD-TYPE" "POTEA WILD-TYPE" 
     TCGA-49-4505      TCGA-49-4506      TCGA-49-4507      TCGA-49-4510 
"POTEA WILD-TYPE" "POTEA WILD-TYPE" "POTEA WILD-TYPE" "POTEA WILD-TYPE" 
     TCGA-49-4512      TCGA-49-4514      TCGA-49-6742      TCGA-49-6743 
"POTEA WILD-TYPE" "POTEA WILD-TYPE" "POTEA WILD-TYPE" "POTEA WILD-TYPE" 
     TCGA-49-6744      TCGA-49-6745      TCGA-50-5044      TCGA-50-5045 
"POTEA WILD-TYPE" "POTEA WILD-TYPE" "POTEA WILD-TYPE" "POTEA WILD-TYPE" 
     TCGA-50-5049      TCGA-50-5051      TCGA-50-5055      TCGA-50-5066 
"POTEA WILD-TYPE" "POTEA WILD-TYPE" "POTEA WILD-TYPE" "POTEA WILD-TYPE" 
     TCGA-50-5068      TCGA-50-5072      TCGA-50-5930      TCGA-50-5931 
"POTEA WILD-TYPE" "POTEA WILD-TYPE" "POTEA WILD-TYPE" "POTEA WILD-TYPE" 
     TCGA-50-5932      TCGA-50-5933      TCGA-50-5935      TCGA-50-5936 
"POTEA WILD-TYPE" "POTEA WILD-TYPE" "POTEA WILD-TYPE" "POTEA WILD-TYPE" 
     TCGA-50-5939      TCGA-50-5941      TCGA-50-5942      TCGA-50-5944 
"POTEA WILD-TYPE" "POTEA WILD-TYPE" "POTEA WILD-TYPE" "POTEA WILD-TYPE" 
     TCGA-50-5946      TCGA-50-6590      TCGA-50-6591      TCGA-50-6592 
"POTEA WILD-TYPE" "POTEA WILD-TYPE" "POTEA WILD-TYPE" "POTEA WILD-TYPE" 
     TCGA-50-6593      TCGA-50-6594      TCGA-50-6595      TCGA-50-6597 
"POTEA WILD-TYPE" "POTEA WILD-TYPE" "POTEA WILD-TYPE" "POTEA WILD-TYPE" 
     TCGA-55-1592      TCGA-55-1594      TCGA-55-1595      TCGA-55-1596 
"POTEA WILD-TYPE" "POTEA WILD-TYPE" "POTEA WILD-TYPE" "POTEA WILD-TYPE" 
     TCGA-55-5899      TCGA-55-6543      TCGA-55-6642      TCGA-55-6712 
"POTEA WILD-TYPE" "POTEA WILD-TYPE" "POTEA WILD-TYPE" "POTEA WILD-TYPE" 
     TCGA-64-1676      TCGA-64-1677      TCGA-64-1678      TCGA-64-1680 
"POTEA WILD-TYPE" "POTEA WILD-TYPE" "POTEA WILD-TYPE" "POTEA WILD-TYPE" 
     TCGA-64-5774      TCGA-64-5775      TCGA-64-5778      TCGA-64-5779 
  "POTEA MUTATED" "POTEA WILD-TYPE" "POTEA WILD-TYPE" "POTEA WILD-TYPE" 
     TCGA-64-5781      TCGA-64-5815      TCGA-67-3770      TCGA-67-3771 
  "POTEA MUTATED" "POTEA WILD-TYPE" "POTEA WILD-TYPE" "POTEA WILD-TYPE" 
     TCGA-67-3772      TCGA-67-3773      TCGA-67-3774      TCGA-67-6215 
  "POTEA MUTATED" "POTEA WILD-TYPE" "POTEA WILD-TYPE" "POTEA WILD-TYPE" 
     TCGA-67-6216      TCGA-67-6217      TCGA-71-6725      TCGA-73-4658 
"POTEA WILD-TYPE" "POTEA WILD-TYPE" "POTEA WILD-TYPE" "POTEA WILD-TYPE" 
     TCGA-73-4659      TCGA-73-4662      TCGA-73-4666      TCGA-73-4668 
"POTEA WILD-TYPE" "POTEA WILD-TYPE" "POTEA WILD-TYPE" "POTEA WILD-TYPE" 
     TCGA-73-4670      TCGA-73-4675      TCGA-73-4676      TCGA-73-4677 
"POTEA WILD-TYPE" "POTEA WILD-TYPE" "POTEA WILD-TYPE" "POTEA WILD-TYPE" 
     TCGA-91-6828      TCGA-91-6829      TCGA-91-6831      TCGA-91-6835 
"POTEA WILD-TYPE" "POTEA WILD-TYPE" "POTEA WILD-TYPE" "POTEA WILD-TYPE" 
     TCGA-91-6836 
"POTEA WILD-TYPE" 
     TCGA-05-4249      TCGA-05-4250      TCGA-05-4382      TCGA-05-4384 
"POTEA WILD-TYPE" "POTEA WILD-TYPE" "POTEA WILD-TYPE" "POTEA WILD-TYPE" 
     TCGA-05-4390      TCGA-05-4396      TCGA-05-4397      TCGA-05-4398 
"POTEA WILD-TYPE" "POTEA WILD-TYPE" "POTEA WILD-TYPE" "POTEA WILD-TYPE" 
     TCGA-05-4402      TCGA-05-4405      TCGA-05-4415      TCGA-05-4417 
"POTEA WILD-TYPE" "POTEA WILD-TYPE" "POTEA WILD-TYPE" "POTEA WILD-TYPE" 
     TCGA-05-4418      TCGA-05-4420      TCGA-05-4424      TCGA-05-4426 
"POTEA WILD-TYPE" "POTEA WILD-TYPE" "POTEA WILD-TYPE" "POTEA WILD-TYPE" 
     TCGA-05-4427      TCGA-05-4430      TCGA-05-4432      TCGA-05-4433 
"POTEA WILD-TYPE" "POTEA WILD-TYPE" "POTEA WILD-TYPE" "POTEA WILD-TYPE" 
     TCGA-05-4434      TCGA-05-5420      TCGA-05-5423      TCGA-05-5425 
"POTEA WILD-TYPE" "POTEA WILD-TYPE" "POTEA WILD-TYPE" "POTEA WILD-TYPE" 
     TCGA-05-5429      TCGA-05-5715      TCGA-35-3615      TCGA-35-4122 
"POTEA WILD-TYPE" "POTEA WILD-TYPE" "POTEA WILD-TYPE" "POTEA WILD-TYPE" 
     TCGA-35-4123      TCGA-35-5375      TCGA-38-4625      TCGA-38-4626 
  "POTEA MUTATED" "POTEA WILD-TYPE" "POTEA WILD-TYPE" "POTEA WILD-TYPE" 
     TCGA-38-4627      TCGA-38-4628      TCGA-38-4629      TCGA-38-4630 
"POTEA WILD-TYPE" "POTEA WILD-TYPE" "POTEA WILD-TYPE" "POTEA WILD-TYPE" 
     TCGA-38-4631      TCGA-38-4632      TCGA-38-6178      TCGA-44-2655 
"POTEA WILD-TYPE" "POTEA WILD-TYPE" "POTEA WILD-TYPE" "POTEA WILD-TYPE" 
     TCGA-44-2656      TCGA-44-2657      TCGA-44-2659      TCGA-44-2661 
"POTEA WILD-TYPE" "POTEA WILD-TYPE" "POTEA WILD-TYPE" "POTEA WILD-TYPE" 
     TCGA-44-2662      TCGA-44-2665      TCGA-44-2666      TCGA-44-2668 
"POTEA WILD-TYPE" "POTEA WILD-TYPE" "POTEA WILD-TYPE"   "POTEA MUTATED" 
     TCGA-44-3396      TCGA-44-3398      TCGA-44-3918      TCGA-44-3919 
"POTEA WILD-TYPE" "POTEA WILD-TYPE"   "POTEA MUTATED" "POTEA WILD-TYPE" 
     TCGA-44-4112      TCGA-44-5643      TCGA-44-5645      TCGA-44-6144 
"POTEA WILD-TYPE" "POTEA WILD-TYPE" "POTEA WILD-TYPE" "POTEA WILD-TYPE" 
     TCGA-44-6145      TCGA-44-6146      TCGA-44-6147      TCGA-44-6148 
"POTEA WILD-TYPE" "POTEA WILD-TYPE" "POTEA WILD-TYPE" "POTEA WILD-TYPE" 
     TCGA-44-6774      TCGA-44-6775      TCGA-44-6776      TCGA-44-6777 
"POTEA WILD-TYPE" "POTEA WILD-TYPE" "POTEA WILD-TYPE" "POTEA WILD-TYPE" 
     TCGA-44-6778      TCGA-44-6779      TCGA-49-4486      TCGA-49-4487 
"POTEA WILD-TYPE" "POTEA WILD-TYPE" "POTEA WILD-TYPE" "POTEA WILD-TYPE" 
     TCGA-49-4488      TCGA-49-4490      TCGA-49-4494      TCGA-49-4501 
"POTEA WILD-TYPE" "POTEA WILD-TYPE" "POTEA WILD-TYPE" "POTEA WILD-TYPE" 
     TCGA-49-4505      TCGA-49-4506      TCGA-49-4507      TCGA-49-4510 
"POTEA WILD-TYPE" "POTEA WILD-TYPE" "POTEA WILD-TYPE" "POTEA WILD-TYPE" 
     TCGA-49-4512      TCGA-49-4514      TCGA-49-6742      TCGA-49-6743 
"POTEA WILD-TYPE" "POTEA WILD-TYPE" "POTEA WILD-TYPE" "POTEA WILD-TYPE" 
     TCGA-49-6744      TCGA-49-6745      TCGA-50-5044      TCGA-50-5045 
"POTEA WILD-TYPE" "POTEA WILD-TYPE" "POTEA WILD-TYPE" "POTEA WILD-TYPE" 
     TCGA-50-5049      TCGA-50-5051      TCGA-50-5055      TCGA-50-5066 
"POTEA WILD-TYPE" "POTEA WILD-TYPE" "POTEA WILD-TYPE" "POTEA WILD-TYPE" 
     TCGA-50-5068      TCGA-50-5072      TCGA-50-5930      TCGA-50-5931 
"POTEA WILD-TYPE" "POTEA WILD-TYPE" "POTEA WILD-TYPE" "POTEA WILD-TYPE" 
     TCGA-50-5932      TCGA-50-5933      TCGA-50-5935      TCGA-50-5936 
"POTEA WILD-TYPE" "POTEA WILD-TYPE" "POTEA WILD-TYPE" "POTEA WILD-TYPE" 
     TCGA-50-5939      TCGA-50-5941      TCGA-50-5942      TCGA-50-5944 
"POTEA WILD-TYPE" "POTEA WILD-TYPE" "POTEA WILD-TYPE" "POTEA WILD-TYPE" 
     TCGA-50-5946      TCGA-50-6590      TCGA-50-6591      TCGA-50-6592 
"POTEA WILD-TYPE" "POTEA WILD-TYPE" "POTEA WILD-TYPE" "POTEA WILD-TYPE" 
     TCGA-50-6593      TCGA-50-6594      TCGA-50-6595      TCGA-50-6597 
"POTEA WILD-TYPE" "POTEA WILD-TYPE" "POTEA WILD-TYPE" "POTEA WILD-TYPE" 
     TCGA-55-1592      TCGA-55-1594      TCGA-55-1595      TCGA-55-1596 
"POTEA WILD-TYPE" "POTEA WILD-TYPE" "POTEA WILD-TYPE" "POTEA WILD-TYPE" 
     TCGA-55-5899      TCGA-55-6543      TCGA-55-6642      TCGA-55-6712 
"POTEA WILD-TYPE" "POTEA WILD-TYPE" "POTEA WILD-TYPE" "POTEA WILD-TYPE" 
     TCGA-64-1676      TCGA-64-1677      TCGA-64-1678      TCGA-64-1680 
"POTEA WILD-TYPE" "POTEA WILD-TYPE" "POTEA WILD-TYPE" "POTEA WILD-TYPE" 
     TCGA-64-5774      TCGA-64-5775      TCGA-64-5778      TCGA-64-5779 
  "POTEA MUTATED" "POTEA WILD-TYPE" "POTEA WILD-TYPE" "POTEA WILD-TYPE" 
     TCGA-64-5781      TCGA-64-5815      TCGA-67-3770      TCGA-67-3771 
  "POTEA MUTATED" "POTEA WILD-TYPE" "POTEA WILD-TYPE" "POTEA WILD-TYPE" 
     TCGA-67-3772      TCGA-67-3773      TCGA-67-3774      TCGA-67-6215 
  "POTEA MUTATED" "POTEA WILD-TYPE" "POTEA WILD-TYPE" "POTEA WILD-TYPE" 
     TCGA-67-6216      TCGA-67-6217      TCGA-71-6725      TCGA-73-4658 
"POTEA WILD-TYPE" "POTEA WILD-TYPE" "POTEA WILD-TYPE" "POTEA WILD-TYPE" 
     TCGA-73-4659      TCGA-73-4662      TCGA-73-4666      TCGA-73-4668 
"POTEA WILD-TYPE" "POTEA WILD-TYPE" "POTEA WILD-TYPE" "POTEA WILD-TYPE" 
     TCGA-73-4670      TCGA-73-4675      TCGA-73-4676      TCGA-73-4677 
"POTEA WILD-TYPE" "POTEA WILD-TYPE" "POTEA WILD-TYPE" "POTEA WILD-TYPE" 
     TCGA-91-6828      TCGA-91-6829      TCGA-91-6831      TCGA-91-6835 
"POTEA WILD-TYPE" "POTEA WILD-TYPE" "POTEA WILD-TYPE" "POTEA WILD-TYPE" 
     TCGA-91-6836 
"POTEA WILD-TYPE" 
     TCGA-05-4249      TCGA-05-4250      TCGA-05-4382      TCGA-05-4384 
"POTEA WILD-TYPE" "POTEA WILD-TYPE" "POTEA WILD-TYPE" "POTEA WILD-TYPE" 
     TCGA-05-4390      TCGA-05-4396      TCGA-05-4397      TCGA-05-4398 
"POTEA WILD-TYPE" "POTEA WILD-TYPE" "POTEA WILD-TYPE" "POTEA WILD-TYPE" 
     TCGA-05-4402      TCGA-05-4405      TCGA-05-4415      TCGA-05-4417 
"POTEA WILD-TYPE" "POTEA WILD-TYPE" "POTEA WILD-TYPE" "POTEA WILD-TYPE" 
     TCGA-05-4418      TCGA-05-4420      TCGA-05-4424      TCGA-05-4426 
"POTEA WILD-TYPE" "POTEA WILD-TYPE" "POTEA WILD-TYPE" "POTEA WILD-TYPE" 
     TCGA-05-4427      TCGA-05-4430      TCGA-05-4432      TCGA-05-4433 
"POTEA WILD-TYPE" "POTEA WILD-TYPE" "POTEA WILD-TYPE" "POTEA WILD-TYPE" 
     TCGA-05-4434      TCGA-05-5420      TCGA-05-5423      TCGA-05-5425 
"POTEA WILD-TYPE" "POTEA WILD-TYPE" "POTEA WILD-TYPE" "POTEA WILD-TYPE" 
     TCGA-05-5429      TCGA-05-5715      TCGA-35-3615      TCGA-35-4122 
"POTEA WILD-TYPE" "POTEA WILD-TYPE" "POTEA WILD-TYPE" "POTEA WILD-TYPE" 
     TCGA-35-4123      TCGA-35-5375      TCGA-38-4625      TCGA-38-4626 
  "POTEA MUTATED" "POTEA WILD-TYPE" "POTEA WILD-TYPE" "POTEA WILD-TYPE" 
     TCGA-38-4627      TCGA-38-4628      TCGA-38-4629      TCGA-38-4630 
"POTEA WILD-TYPE" "POTEA WILD-TYPE" "POTEA WILD-TYPE" "POTEA WILD-TYPE" 
     TCGA-38-4631      TCGA-38-4632      TCGA-38-6178      TCGA-44-2655 
"POTEA WILD-TYPE" "POTEA WILD-TYPE" "POTEA WILD-TYPE" "POTEA WILD-TYPE" 
     TCGA-44-2656      TCGA-44-2657      TCGA-44-2659      TCGA-44-2661 
"POTEA WILD-TYPE" "POTEA WILD-TYPE" "POTEA WILD-TYPE" "POTEA WILD-TYPE" 
     TCGA-44-2662      TCGA-44-2665      TCGA-44-2666      TCGA-44-2668 
"POTEA WILD-TYPE" "POTEA WILD-TYPE" "POTEA WILD-TYPE"   "POTEA MUTATED" 
     TCGA-44-3396      TCGA-44-3398      TCGA-44-3918      TCGA-44-3919 
"POTEA WILD-TYPE" "POTEA WILD-TYPE"   "POTEA MUTATED" "POTEA WILD-TYPE" 
     TCGA-44-4112      TCGA-44-5643      TCGA-44-5645      TCGA-44-6144 
"POTEA WILD-TYPE" "POTEA WILD-TYPE" "POTEA WILD-TYPE" "POTEA WILD-TYPE" 
     TCGA-44-6145      TCGA-44-6146      TCGA-44-6147      TCGA-44-6148 
"POTEA WILD-TYPE" "POTEA WILD-TYPE" "POTEA WILD-TYPE" "POTEA WILD-TYPE" 
     TCGA-44-6774      TCGA-44-6775      TCGA-44-6776      TCGA-44-6777 
"POTEA WILD-TYPE" "POTEA WILD-TYPE" "POTEA WILD-TYPE" "POTEA WILD-TYPE" 
     TCGA-44-6778      TCGA-44-6779      TCGA-49-4486      TCGA-49-4487 
"POTEA WILD-TYPE" "POTEA WILD-TYPE" "POTEA WILD-TYPE" "POTEA WILD-TYPE" 
     TCGA-49-4488      TCGA-49-4490      TCGA-49-4494      TCGA-49-4501 
"POTEA WILD-TYPE" "POTEA WILD-TYPE" "POTEA WILD-TYPE" "POTEA WILD-TYPE" 
     TCGA-49-4505      TCGA-49-4506      TCGA-49-4507      TCGA-49-4510 
"POTEA WILD-TYPE" "POTEA WILD-TYPE" "POTEA WILD-TYPE" "POTEA WILD-TYPE" 
     TCGA-49-4512      TCGA-49-4514      TCGA-49-6742      TCGA-49-6743 
"POTEA WILD-TYPE" "POTEA WILD-TYPE" "POTEA WILD-TYPE" "POTEA WILD-TYPE" 
     TCGA-49-6744      TCGA-49-6745      TCGA-50-5044      TCGA-50-5045 
"POTEA WILD-TYPE" "POTEA WILD-TYPE" "POTEA WILD-TYPE" "POTEA WILD-TYPE" 
     TCGA-50-5049      TCGA-50-5051      TCGA-50-5055      TCGA-50-5066 
"POTEA WILD-TYPE" "POTEA WILD-TYPE" "POTEA WILD-TYPE" "POTEA WILD-TYPE" 
     TCGA-50-5068      TCGA-50-5072      TCGA-50-5930      TCGA-50-5931 
"POTEA WILD-TYPE" "POTEA WILD-TYPE" "POTEA WILD-TYPE" "POTEA WILD-TYPE" 
     TCGA-50-5932      TCGA-50-5933      TCGA-50-5935      TCGA-50-5936 
"POTEA WILD-TYPE" "POTEA WILD-TYPE" "POTEA WILD-TYPE" "POTEA WILD-TYPE" 
     TCGA-50-5939      TCGA-50-5941      TCGA-50-5942      TCGA-50-5944 
"POTEA WILD-TYPE" "POTEA WILD-TYPE" "POTEA WILD-TYPE" "POTEA WILD-TYPE" 
     TCGA-50-5946      TCGA-50-6590      TCGA-50-6591      TCGA-50-6592 
"POTEA WILD-TYPE" "POTEA WILD-TYPE" "POTEA WILD-TYPE" "POTEA WILD-TYPE" 
     TCGA-50-6593      TCGA-50-6594      TCGA-50-6595      TCGA-50-6597 
"POTEA WILD-TYPE" "POTEA WILD-TYPE" "POTEA WILD-TYPE" "POTEA WILD-TYPE" 
     TCGA-55-1592      TCGA-55-1594      TCGA-55-1595      TCGA-55-1596 
"POTEA WILD-TYPE" "POTEA WILD-TYPE" "POTEA WILD-TYPE" "POTEA WILD-TYPE" 
     TCGA-55-5899      TCGA-55-6543      TCGA-55-6642      TCGA-55-6712 
"POTEA WILD-TYPE" "POTEA WILD-TYPE" "POTEA WILD-TYPE" "POTEA WILD-TYPE" 
     TCGA-64-1676      TCGA-64-1677      TCGA-64-1678      TCGA-64-1680 
"POTEA WILD-TYPE" "POTEA WILD-TYPE" "POTEA WILD-TYPE" "POTEA WILD-TYPE" 
     TCGA-64-5774      TCGA-64-5775      TCGA-64-5778      TCGA-64-5779 
  "POTEA MUTATED" "POTEA WILD-TYPE" "POTEA WILD-TYPE" "POTEA WILD-TYPE" 
     TCGA-64-5781      TCGA-64-5815      TCGA-67-3770      TCGA-67-3771 
  "POTEA MUTATED" "POTEA WILD-TYPE" "POTEA WILD-TYPE" "POTEA WILD-TYPE" 
     TCGA-67-3772      TCGA-67-3773      TCGA-67-3774      TCGA-67-6215 
  "POTEA MUTATED" "POTEA WILD-TYPE" "POTEA WILD-TYPE" "POTEA WILD-TYPE" 
     TCGA-67-6216      TCGA-67-6217      TCGA-71-6725      TCGA-73-4658 
"POTEA WILD-TYPE" "POTEA WILD-TYPE" "POTEA WILD-TYPE" "POTEA WILD-TYPE" 
     TCGA-73-4659      TCGA-73-4662      TCGA-73-4666      TCGA-73-4668 
"POTEA WILD-TYPE" "POTEA WILD-TYPE" "POTEA WILD-TYPE" "POTEA WILD-TYPE" 
     TCGA-73-4670      TCGA-73-4675      TCGA-73-4676      TCGA-73-4677 
"POTEA WILD-TYPE" "POTEA WILD-TYPE" "POTEA WILD-TYPE" "POTEA WILD-TYPE" 
     TCGA-91-6828      TCGA-91-6829      TCGA-91-6831      TCGA-91-6835 
"POTEA WILD-TYPE" "POTEA WILD-TYPE" "POTEA WILD-TYPE" "POTEA WILD-TYPE" 
     TCGA-91-6836 
"POTEA WILD-TYPE" 
[1] "hr="     "8.1e+07"
D205V2, continuous
D205V3, binary
[1] "tbl2"
                 cls
clus              [,1] [,2]
  POTEA MUTATED      3    4
  POTEA WILD-TYPE   90   75
        clus
vv       POTEA MUTATED POTEA WILD-TYPE
  FEMALE             3              90
  MALE               4              75
D205V4, continuous
[1] "Remove cluster labels:" "POTEA MUTATED"         
clus
  POTEA MUTATED POTEA WILD-TYPE 
              1              11 
     TCGA-35-4122      TCGA-35-5375      TCGA-64-1677      TCGA-64-5778 
"POTEA WILD-TYPE" "POTEA WILD-TYPE" "POTEA WILD-TYPE" "POTEA WILD-TYPE" 
     TCGA-71-6725      TCGA-73-4659      TCGA-73-4662      TCGA-73-4666 
"POTEA WILD-TYPE" "POTEA WILD-TYPE" "POTEA WILD-TYPE" "POTEA WILD-TYPE" 
     TCGA-73-4668      TCGA-73-4676      TCGA-75-5122 
"POTEA WILD-TYPE" "POTEA WILD-TYPE" "POTEA WILD-TYPE" 
D205V5, multiclass
D205V6, multiclass
    clus
vv   POTEA MUTATED POTEA WILD-TYPE
  T1             2              39
  T2             5             103
  T3             0              14
  T4             0               8
D205V7, multiclass
       clus
vv      POTEA MUTATED POTEA WILD-TYPE
  N0                7              88
  N1                0              37
  N2+N3             0              35
D205V8, multiclass
    clus
vv   POTEA MUTATED POTEA WILD-TYPE
  M0             7             130
  M1             0               9
  MX             0              22
D205V9, multiclass
     clus
vv    POTEA MUTATED POTEA WILD-TYPE
  I               7              81
  II              0              33
  III             0              39
  IV              0               9
D205V10, binary
[1] "tbl2"
                 cls
clus              [,1] [,2]
  POTEA MUTATED      0    7
  POTEA WILD-TYPE   16  149
     clus
vv    POTEA MUTATED POTEA WILD-TYPE
  NO              0              16
  YES             7             149
D205V11, continuous
D205V12, continuous
D205V13, multiclass
                                             clus
vv                                            POTEA MUTATED POTEA WILD-TYPE
  CURRENT REFORMED SMOKER FOR < OR = 15 YEARS             5              57
  CURRENT REFORMED SMOKER FOR > 15 YEARS                  1              45
  CURRENT SMOKER                                          0              28
  LIFELONG NON-SMOKER                                     1              23
D205V14, continuous

Clustering(206) Variable = CXCR7 MUTATION ANALYSIS
D206V1, survival
                 sevent
clus2              0  1
  CXCR7 MUTATED    1  0
  CXCR7 WILD-TYPE 98 50
  CXCR7 MUTATED CXCR7 WILD-TYPE 
              1             148 
  CXCR7 MUTATED CXCR7 WILD-TYPE 
              0              50 
$`CXCR7 MUTATED`
TCGA-91-6831 
        1.28 

$`CXCR7 WILD-TYPE`
TCGA-05-4249 TCGA-05-4250 TCGA-05-4382 TCGA-05-4384 TCGA-05-4390 TCGA-05-4396 
       38.07         3.98        19.92        14.01        37.02         9.96 
TCGA-05-4397 TCGA-05-4398 TCGA-05-4402 TCGA-05-4405 TCGA-05-4415 TCGA-05-4417 
       24.03        47.05         8.02        20.05         2.96        14.93 
TCGA-05-4418 TCGA-05-4420 TCGA-05-4424 TCGA-05-4426 TCGA-05-4427 TCGA-05-4430 
        8.98        29.95        30.02        26.01        26.01        25.02 
TCGA-05-4432 TCGA-05-4433 TCGA-05-4434 TCGA-05-5420 TCGA-05-5423 TCGA-05-5425 
       25.02        24.00        15.02         1.02         4.96         2.96 
TCGA-05-5429 TCGA-05-5715 TCGA-35-3615 TCGA-35-4122 TCGA-35-4123 TCGA-35-5375 
        0.99         2.04         0.46         7.36         5.95         8.68 
TCGA-38-4625 TCGA-38-4626 TCGA-38-4627 TCGA-38-4628 TCGA-38-4629 TCGA-38-4630 
       47.61        85.32        37.71        49.02        28.37        35.28 
TCGA-38-4631 TCGA-38-4632 TCGA-38-6178 TCGA-44-2655 TCGA-44-2656 TCGA-44-2657 
       11.64        44.61         5.19        18.87        19.10        13.15 
TCGA-44-2659 TCGA-44-2661 TCGA-44-2662 TCGA-44-2665 TCGA-44-2666 TCGA-44-2668 
       17.39         3.39        15.78        13.15         3.19         8.09 
TCGA-44-3396 TCGA-44-3398 TCGA-44-3918 TCGA-44-3919 TCGA-44-4112 TCGA-44-5643 
       10.22         8.32         6.44         6.21         4.60         3.48 
TCGA-44-5645 TCGA-44-6144 TCGA-44-6145 TCGA-44-6146 TCGA-44-6147 TCGA-44-6148 
        6.84         0.30         3.35         9.93         7.76         3.12 
TCGA-44-6774 TCGA-44-6775 TCGA-44-6776 TCGA-44-6777 TCGA-44-6778 TCGA-44-6779 
        5.42         2.70        63.72        32.45        36.49        16.41 
TCGA-49-4486 TCGA-49-4487 TCGA-49-4488 TCGA-49-4490 TCGA-49-4494 TCGA-49-4501 
       76.21        28.11        28.57        12.66        35.54        46.72 
TCGA-49-4505 TCGA-49-4506 TCGA-49-4507 TCGA-49-4510 TCGA-49-4512 TCGA-49-4514 
       14.07        32.84         8.81        29.46        29.75        43.20 
TCGA-49-6742 TCGA-49-6743 TCGA-49-6744 TCGA-49-6745 TCGA-50-5044 TCGA-50-5045 
       15.02        12.13        12.99         4.93        20.48        71.47 
TCGA-50-5049 TCGA-50-5051 TCGA-50-5055 TCGA-50-5066 TCGA-50-5068 TCGA-50-5072 
       48.82        14.96        25.81         9.76        49.28         8.05 
TCGA-50-5930 TCGA-50-5931 TCGA-50-5932 TCGA-50-5933 TCGA-50-5935 TCGA-50-5936 
        9.27         8.78        35.87        77.88        21.47         8.45 
TCGA-50-5939 TCGA-50-5941 TCGA-50-5942 TCGA-50-5944 TCGA-50-5946 TCGA-50-6590 
       15.12         9.37         4.44        12.26        11.47        42.31 
TCGA-50-6591 TCGA-50-6592 TCGA-50-6593 TCGA-50-6594 TCGA-50-6595 TCGA-50-6597 
        3.88        25.51        11.05        12.16         6.21        33.37 
TCGA-55-1592 TCGA-55-1594 TCGA-55-1595 TCGA-55-1596 TCGA-55-5899 TCGA-55-6543 
       23.05        38.73        48.62        45.17         2.86         0.07 
TCGA-55-6642 TCGA-55-6712 TCGA-64-1676 TCGA-64-1677 TCGA-64-1678 TCGA-64-1680 
       32.61         0.79        56.81        20.65        39.09        37.02 
TCGA-64-5774 TCGA-64-5775 TCGA-64-5778 TCGA-64-5779 TCGA-64-5781 TCGA-64-5815 
       83.84         0.10        30.44        16.67        39.52         7.33 
TCGA-67-3770 TCGA-67-3771 TCGA-67-3772 TCGA-67-3773 TCGA-67-3774 TCGA-67-6215 
        0.99         1.97         0.59         2.04         0.59         0.89 
TCGA-67-6216 TCGA-67-6217 TCGA-71-6725 TCGA-73-4658 TCGA-73-4659 TCGA-73-4662 
        0.69        13.87         2.01        52.57        23.38        29.95 
TCGA-73-4666 TCGA-73-4668 TCGA-73-4670 TCGA-73-4675 TCGA-73-4676 TCGA-73-4677 
       20.28        15.35         0.46         1.32         4.01         1.25 
TCGA-91-6828 TCGA-91-6829 TCGA-91-6835 TCGA-91-6836 
        1.22        41.33         1.15         0.36 

  CXCR7 MUTATED CXCR7 WILD-TYPE 
           1.28            0.07 
  CXCR7 MUTATED CXCR7 WILD-TYPE 
           1.28           85.32 
  CXCR7 MUTATED CXCR7 WILD-TYPE 
           1.28           13.94 
[1] "1.3 - 1.3 (1.3)"   "0.1 - 85.3 (13.9)"
     TCGA-05-4249      TCGA-05-4250      TCGA-05-4382      TCGA-05-4384 
"CXCR7 WILD-TYPE" "CXCR7 WILD-TYPE" "CXCR7 WILD-TYPE" "CXCR7 WILD-TYPE" 
     TCGA-05-4390      TCGA-05-4396      TCGA-05-4397      TCGA-05-4398 
"CXCR7 WILD-TYPE" "CXCR7 WILD-TYPE" "CXCR7 WILD-TYPE" "CXCR7 WILD-TYPE" 
     TCGA-05-4402      TCGA-05-4405      TCGA-05-4415      TCGA-05-4417 
"CXCR7 WILD-TYPE" "CXCR7 WILD-TYPE" "CXCR7 WILD-TYPE" "CXCR7 WILD-TYPE" 
     TCGA-05-4418      TCGA-05-4420      TCGA-05-4424      TCGA-05-4426 
"CXCR7 WILD-TYPE" "CXCR7 WILD-TYPE" "CXCR7 WILD-TYPE" "CXCR7 WILD-TYPE" 
     TCGA-05-4427      TCGA-05-4430      TCGA-05-4432      TCGA-05-4433 
"CXCR7 WILD-TYPE" "CXCR7 WILD-TYPE" "CXCR7 WILD-TYPE" "CXCR7 WILD-TYPE" 
     TCGA-05-4434      TCGA-05-5420      TCGA-05-5423      TCGA-05-5425 
"CXCR7 WILD-TYPE" "CXCR7 WILD-TYPE" "CXCR7 WILD-TYPE" "CXCR7 WILD-TYPE" 
     TCGA-05-5429      TCGA-05-5715      TCGA-35-3615      TCGA-35-4122 
"CXCR7 WILD-TYPE" "CXCR7 WILD-TYPE" "CXCR7 WILD-TYPE" "CXCR7 WILD-TYPE" 
     TCGA-35-4123      TCGA-35-5375      TCGA-38-4625      TCGA-38-4626 
"CXCR7 WILD-TYPE" "CXCR7 WILD-TYPE" "CXCR7 WILD-TYPE" "CXCR7 WILD-TYPE" 
     TCGA-38-4627      TCGA-38-4628      TCGA-38-4629      TCGA-38-4630 
"CXCR7 WILD-TYPE" "CXCR7 WILD-TYPE" "CXCR7 WILD-TYPE" "CXCR7 WILD-TYPE" 
     TCGA-38-4631      TCGA-38-4632      TCGA-38-6178      TCGA-44-2655 
"CXCR7 WILD-TYPE" "CXCR7 WILD-TYPE" "CXCR7 WILD-TYPE" "CXCR7 WILD-TYPE" 
     TCGA-44-2656      TCGA-44-2657      TCGA-44-2659      TCGA-44-2661 
"CXCR7 WILD-TYPE" "CXCR7 WILD-TYPE" "CXCR7 WILD-TYPE" "CXCR7 WILD-TYPE" 
     TCGA-44-2662      TCGA-44-2665      TCGA-44-2666      TCGA-44-2668 
"CXCR7 WILD-TYPE" "CXCR7 WILD-TYPE" "CXCR7 WILD-TYPE" "CXCR7 WILD-TYPE" 
     TCGA-44-3396      TCGA-44-3398      TCGA-44-3918      TCGA-44-3919 
"CXCR7 WILD-TYPE" "CXCR7 WILD-TYPE" "CXCR7 WILD-TYPE" "CXCR7 WILD-TYPE" 
     TCGA-44-4112      TCGA-44-5643      TCGA-44-5645      TCGA-44-6144 
"CXCR7 WILD-TYPE" "CXCR7 WILD-TYPE" "CXCR7 WILD-TYPE" "CXCR7 WILD-TYPE" 
     TCGA-44-6145      TCGA-44-6146      TCGA-44-6147      TCGA-44-6148 
"CXCR7 WILD-TYPE" "CXCR7 WILD-TYPE" "CXCR7 WILD-TYPE" "CXCR7 WILD-TYPE" 
     TCGA-44-6774      TCGA-44-6775      TCGA-44-6776      TCGA-44-6777 
"CXCR7 WILD-TYPE" "CXCR7 WILD-TYPE" "CXCR7 WILD-TYPE" "CXCR7 WILD-TYPE" 
     TCGA-44-6778      TCGA-44-6779      TCGA-49-4486      TCGA-49-4487 
"CXCR7 WILD-TYPE" "CXCR7 WILD-TYPE" "CXCR7 WILD-TYPE" "CXCR7 WILD-TYPE" 
     TCGA-49-4488      TCGA-49-4490      TCGA-49-4494      TCGA-49-4501 
"CXCR7 WILD-TYPE" "CXCR7 WILD-TYPE" "CXCR7 WILD-TYPE" "CXCR7 WILD-TYPE" 
     TCGA-49-4505      TCGA-49-4506      TCGA-49-4507      TCGA-49-4510 
"CXCR7 WILD-TYPE" "CXCR7 WILD-TYPE" "CXCR7 WILD-TYPE" "CXCR7 WILD-TYPE" 
     TCGA-49-4512      TCGA-49-4514      TCGA-49-6742      TCGA-49-6743 
"CXCR7 WILD-TYPE" "CXCR7 WILD-TYPE" "CXCR7 WILD-TYPE" "CXCR7 WILD-TYPE" 
     TCGA-49-6744      TCGA-49-6745      TCGA-50-5044      TCGA-50-5045 
"CXCR7 WILD-TYPE" "CXCR7 WILD-TYPE" "CXCR7 WILD-TYPE" "CXCR7 WILD-TYPE" 
     TCGA-50-5049      TCGA-50-5051      TCGA-50-5055      TCGA-50-5066 
"CXCR7 WILD-TYPE" "CXCR7 WILD-TYPE" "CXCR7 WILD-TYPE" "CXCR7 WILD-TYPE" 
     TCGA-50-5068      TCGA-50-5072      TCGA-50-5930      TCGA-50-5931 
"CXCR7 WILD-TYPE" "CXCR7 WILD-TYPE" "CXCR7 WILD-TYPE" "CXCR7 WILD-TYPE" 
     TCGA-50-5932      TCGA-50-5933      TCGA-50-5935      TCGA-50-5936 
"CXCR7 WILD-TYPE" "CXCR7 WILD-TYPE" "CXCR7 WILD-TYPE" "CXCR7 WILD-TYPE" 
     TCGA-50-5939      TCGA-50-5941      TCGA-50-5942      TCGA-50-5944 
"CXCR7 WILD-TYPE" "CXCR7 WILD-TYPE" "CXCR7 WILD-TYPE" "CXCR7 WILD-TYPE" 
     TCGA-50-5946      TCGA-50-6590      TCGA-50-6591      TCGA-50-6592 
"CXCR7 WILD-TYPE" "CXCR7 WILD-TYPE" "CXCR7 WILD-TYPE" "CXCR7 WILD-TYPE" 
     TCGA-50-6593      TCGA-50-6594      TCGA-50-6595      TCGA-50-6597 
"CXCR7 WILD-TYPE" "CXCR7 WILD-TYPE" "CXCR7 WILD-TYPE" "CXCR7 WILD-TYPE" 
     TCGA-55-1592      TCGA-55-1594      TCGA-55-1595      TCGA-55-1596 
"CXCR7 WILD-TYPE" "CXCR7 WILD-TYPE" "CXCR7 WILD-TYPE" "CXCR7 WILD-TYPE" 
     TCGA-55-5899      TCGA-55-6543      TCGA-55-6642      TCGA-55-6712 
"CXCR7 WILD-TYPE" "CXCR7 WILD-TYPE" "CXCR7 WILD-TYPE" "CXCR7 WILD-TYPE" 
     TCGA-64-1676      TCGA-64-1677      TCGA-64-1678      TCGA-64-1680 
"CXCR7 WILD-TYPE" "CXCR7 WILD-TYPE" "CXCR7 WILD-TYPE" "CXCR7 WILD-TYPE" 
     TCGA-64-5774      TCGA-64-5775      TCGA-64-5778      TCGA-64-5779 
"CXCR7 WILD-TYPE" "CXCR7 WILD-TYPE" "CXCR7 WILD-TYPE" "CXCR7 WILD-TYPE" 
     TCGA-64-5781      TCGA-64-5815      TCGA-67-3770      TCGA-67-3771 
"CXCR7 WILD-TYPE" "CXCR7 WILD-TYPE" "CXCR7 WILD-TYPE" "CXCR7 WILD-TYPE" 
     TCGA-67-3772      TCGA-67-3773      TCGA-67-3774      TCGA-67-6215 
"CXCR7 WILD-TYPE" "CXCR7 WILD-TYPE" "CXCR7 WILD-TYPE" "CXCR7 WILD-TYPE" 
     TCGA-67-6216      TCGA-67-6217      TCGA-71-6725      TCGA-73-4658 
"CXCR7 WILD-TYPE" "CXCR7 WILD-TYPE" "CXCR7 WILD-TYPE" "CXCR7 WILD-TYPE" 
     TCGA-73-4659      TCGA-73-4662      TCGA-73-4666      TCGA-73-4668 
"CXCR7 WILD-TYPE" "CXCR7 WILD-TYPE" "CXCR7 WILD-TYPE" "CXCR7 WILD-TYPE" 
     TCGA-73-4670      TCGA-73-4675      TCGA-73-4676      TCGA-73-4677 
"CXCR7 WILD-TYPE" "CXCR7 WILD-TYPE" "CXCR7 WILD-TYPE" "CXCR7 WILD-TYPE" 
     TCGA-91-6828      TCGA-91-6829      TCGA-91-6831      TCGA-91-6835 
"CXCR7 WILD-TYPE" "CXCR7 WILD-TYPE"   "CXCR7 MUTATED" "CXCR7 WILD-TYPE" 
     TCGA-91-6836 
"CXCR7 WILD-TYPE" 
     TCGA-05-4249      TCGA-05-4250      TCGA-05-4382      TCGA-05-4384 
"CXCR7 WILD-TYPE" "CXCR7 WILD-TYPE" "CXCR7 WILD-TYPE" "CXCR7 WILD-TYPE" 
     TCGA-05-4390      TCGA-05-4396      TCGA-05-4397      TCGA-05-4398 
"CXCR7 WILD-TYPE" "CXCR7 WILD-TYPE" "CXCR7 WILD-TYPE" "CXCR7 WILD-TYPE" 
     TCGA-05-4402      TCGA-05-4405      TCGA-05-4415      TCGA-05-4417 
"CXCR7 WILD-TYPE" "CXCR7 WILD-TYPE" "CXCR7 WILD-TYPE" "CXCR7 WILD-TYPE" 
     TCGA-05-4418      TCGA-05-4420      TCGA-05-4424      TCGA-05-4426 
"CXCR7 WILD-TYPE" "CXCR7 WILD-TYPE" "CXCR7 WILD-TYPE" "CXCR7 WILD-TYPE" 
     TCGA-05-4427      TCGA-05-4430      TCGA-05-4432      TCGA-05-4433 
"CXCR7 WILD-TYPE" "CXCR7 WILD-TYPE" "CXCR7 WILD-TYPE" "CXCR7 WILD-TYPE" 
     TCGA-05-4434      TCGA-05-5420      TCGA-05-5423      TCGA-05-5425 
"CXCR7 WILD-TYPE" "CXCR7 WILD-TYPE" "CXCR7 WILD-TYPE" "CXCR7 WILD-TYPE" 
     TCGA-05-5429      TCGA-05-5715      TCGA-35-3615      TCGA-35-4122 
"CXCR7 WILD-TYPE" "CXCR7 WILD-TYPE" "CXCR7 WILD-TYPE" "CXCR7 WILD-TYPE" 
     TCGA-35-4123      TCGA-35-5375      TCGA-38-4625      TCGA-38-4626 
"CXCR7 WILD-TYPE" "CXCR7 WILD-TYPE" "CXCR7 WILD-TYPE" "CXCR7 WILD-TYPE" 
     TCGA-38-4627      TCGA-38-4628      TCGA-38-4629      TCGA-38-4630 
"CXCR7 WILD-TYPE" "CXCR7 WILD-TYPE" "CXCR7 WILD-TYPE" "CXCR7 WILD-TYPE" 
     TCGA-38-4631      TCGA-38-4632      TCGA-38-6178      TCGA-44-2655 
"CXCR7 WILD-TYPE" "CXCR7 WILD-TYPE" "CXCR7 WILD-TYPE" "CXCR7 WILD-TYPE" 
     TCGA-44-2656      TCGA-44-2657      TCGA-44-2659      TCGA-44-2661 
"CXCR7 WILD-TYPE" "CXCR7 WILD-TYPE" "CXCR7 WILD-TYPE" "CXCR7 WILD-TYPE" 
     TCGA-44-2662      TCGA-44-2665      TCGA-44-2666      TCGA-44-2668 
"CXCR7 WILD-TYPE" "CXCR7 WILD-TYPE" "CXCR7 WILD-TYPE" "CXCR7 WILD-TYPE" 
     TCGA-44-3396      TCGA-44-3398      TCGA-44-3918      TCGA-44-3919 
"CXCR7 WILD-TYPE" "CXCR7 WILD-TYPE" "CXCR7 WILD-TYPE" "CXCR7 WILD-TYPE" 
     TCGA-44-4112      TCGA-44-5643      TCGA-44-5645      TCGA-44-6144 
"CXCR7 WILD-TYPE" "CXCR7 WILD-TYPE" "CXCR7 WILD-TYPE" "CXCR7 WILD-TYPE" 
     TCGA-44-6145      TCGA-44-6146      TCGA-44-6147      TCGA-44-6148 
"CXCR7 WILD-TYPE" "CXCR7 WILD-TYPE" "CXCR7 WILD-TYPE" "CXCR7 WILD-TYPE" 
     TCGA-44-6774      TCGA-44-6775      TCGA-44-6776      TCGA-44-6777 
"CXCR7 WILD-TYPE" "CXCR7 WILD-TYPE" "CXCR7 WILD-TYPE" "CXCR7 WILD-TYPE" 
     TCGA-44-6778      TCGA-44-6779      TCGA-49-4486      TCGA-49-4487 
"CXCR7 WILD-TYPE" "CXCR7 WILD-TYPE" "CXCR7 WILD-TYPE" "CXCR7 WILD-TYPE" 
     TCGA-49-4488      TCGA-49-4490      TCGA-49-4494      TCGA-49-4501 
"CXCR7 WILD-TYPE" "CXCR7 WILD-TYPE" "CXCR7 WILD-TYPE" "CXCR7 WILD-TYPE" 
     TCGA-49-4505      TCGA-49-4506      TCGA-49-4507      TCGA-49-4510 
"CXCR7 WILD-TYPE" "CXCR7 WILD-TYPE" "CXCR7 WILD-TYPE" "CXCR7 WILD-TYPE" 
     TCGA-49-4512      TCGA-49-4514      TCGA-49-6742      TCGA-49-6743 
"CXCR7 WILD-TYPE" "CXCR7 WILD-TYPE" "CXCR7 WILD-TYPE" "CXCR7 WILD-TYPE" 
     TCGA-49-6744      TCGA-49-6745      TCGA-50-5044      TCGA-50-5045 
"CXCR7 WILD-TYPE" "CXCR7 WILD-TYPE" "CXCR7 WILD-TYPE" "CXCR7 WILD-TYPE" 
     TCGA-50-5049      TCGA-50-5051      TCGA-50-5055      TCGA-50-5066 
"CXCR7 WILD-TYPE" "CXCR7 WILD-TYPE" "CXCR7 WILD-TYPE" "CXCR7 WILD-TYPE" 
     TCGA-50-5068      TCGA-50-5072      TCGA-50-5930      TCGA-50-5931 
"CXCR7 WILD-TYPE" "CXCR7 WILD-TYPE" "CXCR7 WILD-TYPE" "CXCR7 WILD-TYPE" 
     TCGA-50-5932      TCGA-50-5933      TCGA-50-5935      TCGA-50-5936 
"CXCR7 WILD-TYPE" "CXCR7 WILD-TYPE" "CXCR7 WILD-TYPE" "CXCR7 WILD-TYPE" 
     TCGA-50-5939      TCGA-50-5941      TCGA-50-5942      TCGA-50-5944 
"CXCR7 WILD-TYPE" "CXCR7 WILD-TYPE" "CXCR7 WILD-TYPE" "CXCR7 WILD-TYPE" 
     TCGA-50-5946      TCGA-50-6590      TCGA-50-6591      TCGA-50-6592 
"CXCR7 WILD-TYPE" "CXCR7 WILD-TYPE" "CXCR7 WILD-TYPE" "CXCR7 WILD-TYPE" 
     TCGA-50-6593      TCGA-50-6594      TCGA-50-6595      TCGA-50-6597 
"CXCR7 WILD-TYPE" "CXCR7 WILD-TYPE" "CXCR7 WILD-TYPE" "CXCR7 WILD-TYPE" 
     TCGA-55-1592      TCGA-55-1594      TCGA-55-1595      TCGA-55-1596 
"CXCR7 WILD-TYPE" "CXCR7 WILD-TYPE" "CXCR7 WILD-TYPE" "CXCR7 WILD-TYPE" 
     TCGA-55-5899      TCGA-55-6543      TCGA-55-6642      TCGA-55-6712 
"CXCR7 WILD-TYPE" "CXCR7 WILD-TYPE" "CXCR7 WILD-TYPE" "CXCR7 WILD-TYPE" 
     TCGA-64-1676      TCGA-64-1677      TCGA-64-1678      TCGA-64-1680 
"CXCR7 WILD-TYPE" "CXCR7 WILD-TYPE" "CXCR7 WILD-TYPE" "CXCR7 WILD-TYPE" 
     TCGA-64-5774      TCGA-64-5775      TCGA-64-5778      TCGA-64-5779 
"CXCR7 WILD-TYPE" "CXCR7 WILD-TYPE" "CXCR7 WILD-TYPE" "CXCR7 WILD-TYPE" 
     TCGA-64-5781      TCGA-64-5815      TCGA-67-3770      TCGA-67-3771 
"CXCR7 WILD-TYPE" "CXCR7 WILD-TYPE" "CXCR7 WILD-TYPE" "CXCR7 WILD-TYPE" 
     TCGA-67-3772      TCGA-67-3773      TCGA-67-3774      TCGA-67-6215 
"CXCR7 WILD-TYPE" "CXCR7 WILD-TYPE" "CXCR7 WILD-TYPE" "CXCR7 WILD-TYPE" 
     TCGA-67-6216      TCGA-67-6217      TCGA-71-6725      TCGA-73-4658 
"CXCR7 WILD-TYPE" "CXCR7 WILD-TYPE" "CXCR7 WILD-TYPE" "CXCR7 WILD-TYPE" 
     TCGA-73-4659      TCGA-73-4662      TCGA-73-4666      TCGA-73-4668 
"CXCR7 WILD-TYPE" "CXCR7 WILD-TYPE" "CXCR7 WILD-TYPE" "CXCR7 WILD-TYPE" 
     TCGA-73-4670      TCGA-73-4675      TCGA-73-4676      TCGA-73-4677 
"CXCR7 WILD-TYPE" "CXCR7 WILD-TYPE" "CXCR7 WILD-TYPE" "CXCR7 WILD-TYPE" 
     TCGA-91-6828      TCGA-91-6829      TCGA-91-6831      TCGA-91-6835 
"CXCR7 WILD-TYPE" "CXCR7 WILD-TYPE"   "CXCR7 MUTATED" "CXCR7 WILD-TYPE" 
     TCGA-91-6836 
"CXCR7 WILD-TYPE" 
     TCGA-05-4249      TCGA-05-4250      TCGA-05-4382      TCGA-05-4384 
"CXCR7 WILD-TYPE" "CXCR7 WILD-TYPE" "CXCR7 WILD-TYPE" "CXCR7 WILD-TYPE" 
     TCGA-05-4390      TCGA-05-4396      TCGA-05-4397      TCGA-05-4398 
"CXCR7 WILD-TYPE" "CXCR7 WILD-TYPE" "CXCR7 WILD-TYPE" "CXCR7 WILD-TYPE" 
     TCGA-05-4402      TCGA-05-4405      TCGA-05-4415      TCGA-05-4417 
"CXCR7 WILD-TYPE" "CXCR7 WILD-TYPE" "CXCR7 WILD-TYPE" "CXCR7 WILD-TYPE" 
     TCGA-05-4418      TCGA-05-4420      TCGA-05-4424      TCGA-05-4426 
"CXCR7 WILD-TYPE" "CXCR7 WILD-TYPE" "CXCR7 WILD-TYPE" "CXCR7 WILD-TYPE" 
     TCGA-05-4427      TCGA-05-4430      TCGA-05-4432      TCGA-05-4433 
"CXCR7 WILD-TYPE" "CXCR7 WILD-TYPE" "CXCR7 WILD-TYPE" "CXCR7 WILD-TYPE" 
     TCGA-05-4434      TCGA-05-5420      TCGA-05-5423      TCGA-05-5425 
"CXCR7 WILD-TYPE" "CXCR7 WILD-TYPE" "CXCR7 WILD-TYPE" "CXCR7 WILD-TYPE" 
     TCGA-05-5429      TCGA-05-5715      TCGA-35-3615      TCGA-35-4122 
"CXCR7 WILD-TYPE" "CXCR7 WILD-TYPE" "CXCR7 WILD-TYPE" "CXCR7 WILD-TYPE" 
     TCGA-35-4123      TCGA-35-5375      TCGA-38-4625      TCGA-38-4626 
"CXCR7 WILD-TYPE" "CXCR7 WILD-TYPE" "CXCR7 WILD-TYPE" "CXCR7 WILD-TYPE" 
     TCGA-38-4627      TCGA-38-4628      TCGA-38-4629      TCGA-38-4630 
"CXCR7 WILD-TYPE" "CXCR7 WILD-TYPE" "CXCR7 WILD-TYPE" "CXCR7 WILD-TYPE" 
     TCGA-38-4631      TCGA-38-4632      TCGA-38-6178      TCGA-44-2655 
"CXCR7 WILD-TYPE" "CXCR7 WILD-TYPE" "CXCR7 WILD-TYPE" "CXCR7 WILD-TYPE" 
     TCGA-44-2656      TCGA-44-2657      TCGA-44-2659      TCGA-44-2661 
"CXCR7 WILD-TYPE" "CXCR7 WILD-TYPE" "CXCR7 WILD-TYPE" "CXCR7 WILD-TYPE" 
     TCGA-44-2662      TCGA-44-2665      TCGA-44-2666      TCGA-44-2668 
"CXCR7 WILD-TYPE" "CXCR7 WILD-TYPE" "CXCR7 WILD-TYPE" "CXCR7 WILD-TYPE" 
     TCGA-44-3396      TCGA-44-3398      TCGA-44-3918      TCGA-44-3919 
"CXCR7 WILD-TYPE" "CXCR7 WILD-TYPE" "CXCR7 WILD-TYPE" "CXCR7 WILD-TYPE" 
     TCGA-44-4112      TCGA-44-5643      TCGA-44-5645      TCGA-44-6144 
"CXCR7 WILD-TYPE" "CXCR7 WILD-TYPE" "CXCR7 WILD-TYPE" "CXCR7 WILD-TYPE" 
     TCGA-44-6145      TCGA-44-6146      TCGA-44-6147      TCGA-44-6148 
"CXCR7 WILD-TYPE" "CXCR7 WILD-TYPE" "CXCR7 WILD-TYPE" "CXCR7 WILD-TYPE" 
     TCGA-44-6774      TCGA-44-6775      TCGA-44-6776      TCGA-44-6777 
"CXCR7 WILD-TYPE" "CXCR7 WILD-TYPE" "CXCR7 WILD-TYPE" "CXCR7 WILD-TYPE" 
     TCGA-44-6778      TCGA-44-6779      TCGA-49-4486      TCGA-49-4487 
"CXCR7 WILD-TYPE" "CXCR7 WILD-TYPE" "CXCR7 WILD-TYPE" "CXCR7 WILD-TYPE" 
     TCGA-49-4488      TCGA-49-4490      TCGA-49-4494      TCGA-49-4501 
"CXCR7 WILD-TYPE" "CXCR7 WILD-TYPE" "CXCR7 WILD-TYPE" "CXCR7 WILD-TYPE" 
     TCGA-49-4505      TCGA-49-4506      TCGA-49-4507      TCGA-49-4510 
"CXCR7 WILD-TYPE" "CXCR7 WILD-TYPE" "CXCR7 WILD-TYPE" "CXCR7 WILD-TYPE" 
     TCGA-49-4512      TCGA-49-4514      TCGA-49-6742      TCGA-49-6743 
"CXCR7 WILD-TYPE" "CXCR7 WILD-TYPE" "CXCR7 WILD-TYPE" "CXCR7 WILD-TYPE" 
     TCGA-49-6744      TCGA-49-6745      TCGA-50-5044      TCGA-50-5045 
"CXCR7 WILD-TYPE" "CXCR7 WILD-TYPE" "CXCR7 WILD-TYPE" "CXCR7 WILD-TYPE" 
     TCGA-50-5049      TCGA-50-5051      TCGA-50-5055      TCGA-50-5066 
"CXCR7 WILD-TYPE" "CXCR7 WILD-TYPE" "CXCR7 WILD-TYPE" "CXCR7 WILD-TYPE" 
     TCGA-50-5068      TCGA-50-5072      TCGA-50-5930      TCGA-50-5931 
"CXCR7 WILD-TYPE" "CXCR7 WILD-TYPE" "CXCR7 WILD-TYPE" "CXCR7 WILD-TYPE" 
     TCGA-50-5932      TCGA-50-5933      TCGA-50-5935      TCGA-50-5936 
"CXCR7 WILD-TYPE" "CXCR7 WILD-TYPE" "CXCR7 WILD-TYPE" "CXCR7 WILD-TYPE" 
     TCGA-50-5939      TCGA-50-5941      TCGA-50-5942      TCGA-50-5944 
"CXCR7 WILD-TYPE" "CXCR7 WILD-TYPE" "CXCR7 WILD-TYPE" "CXCR7 WILD-TYPE" 
     TCGA-50-5946      TCGA-50-6590      TCGA-50-6591      TCGA-50-6592 
"CXCR7 WILD-TYPE" "CXCR7 WILD-TYPE" "CXCR7 WILD-TYPE" "CXCR7 WILD-TYPE" 
     TCGA-50-6593      TCGA-50-6594      TCGA-50-6595      TCGA-50-6597 
"CXCR7 WILD-TYPE" "CXCR7 WILD-TYPE" "CXCR7 WILD-TYPE" "CXCR7 WILD-TYPE" 
     TCGA-55-1592      TCGA-55-1594      TCGA-55-1595      TCGA-55-1596 
"CXCR7 WILD-TYPE" "CXCR7 WILD-TYPE" "CXCR7 WILD-TYPE" "CXCR7 WILD-TYPE" 
     TCGA-55-5899      TCGA-55-6543      TCGA-55-6642      TCGA-55-6712 
"CXCR7 WILD-TYPE" "CXCR7 WILD-TYPE" "CXCR7 WILD-TYPE" "CXCR7 WILD-TYPE" 
     TCGA-64-1676      TCGA-64-1677      TCGA-64-1678      TCGA-64-1680 
"CXCR7 WILD-TYPE" "CXCR7 WILD-TYPE" "CXCR7 WILD-TYPE" "CXCR7 WILD-TYPE" 
     TCGA-64-5774      TCGA-64-5775      TCGA-64-5778      TCGA-64-5779 
"CXCR7 WILD-TYPE" "CXCR7 WILD-TYPE" "CXCR7 WILD-TYPE" "CXCR7 WILD-TYPE" 
     TCGA-64-5781      TCGA-64-5815      TCGA-67-3770      TCGA-67-3771 
"CXCR7 WILD-TYPE" "CXCR7 WILD-TYPE" "CXCR7 WILD-TYPE" "CXCR7 WILD-TYPE" 
     TCGA-67-3772      TCGA-67-3773      TCGA-67-3774      TCGA-67-6215 
"CXCR7 WILD-TYPE" "CXCR7 WILD-TYPE" "CXCR7 WILD-TYPE" "CXCR7 WILD-TYPE" 
     TCGA-67-6216      TCGA-67-6217      TCGA-71-6725      TCGA-73-4658 
"CXCR7 WILD-TYPE" "CXCR7 WILD-TYPE" "CXCR7 WILD-TYPE" "CXCR7 WILD-TYPE" 
     TCGA-73-4659      TCGA-73-4662      TCGA-73-4666      TCGA-73-4668 
"CXCR7 WILD-TYPE" "CXCR7 WILD-TYPE" "CXCR7 WILD-TYPE" "CXCR7 WILD-TYPE" 
     TCGA-73-4670      TCGA-73-4675      TCGA-73-4676      TCGA-73-4677 
"CXCR7 WILD-TYPE" "CXCR7 WILD-TYPE" "CXCR7 WILD-TYPE" "CXCR7 WILD-TYPE" 
     TCGA-91-6828      TCGA-91-6829      TCGA-91-6831      TCGA-91-6835 
"CXCR7 WILD-TYPE" "CXCR7 WILD-TYPE"   "CXCR7 MUTATED" "CXCR7 WILD-TYPE" 
     TCGA-91-6836 
"CXCR7 WILD-TYPE" 
[1] "Remove cluster labels:" "CXCR7 MUTATED"         
clus
  CXCR7 MUTATED CXCR7 WILD-TYPE 
              1             148 
     TCGA-05-4249      TCGA-05-4250      TCGA-05-4382      TCGA-05-4384 
"CXCR7 WILD-TYPE" "CXCR7 WILD-TYPE" "CXCR7 WILD-TYPE" "CXCR7 WILD-TYPE" 
     TCGA-05-4390      TCGA-05-4396      TCGA-05-4397      TCGA-05-4398 
"CXCR7 WILD-TYPE" "CXCR7 WILD-TYPE" "CXCR7 WILD-TYPE" "CXCR7 WILD-TYPE" 
     TCGA-05-4402      TCGA-05-4405      TCGA-05-4415      TCGA-05-4417 
"CXCR7 WILD-TYPE" "CXCR7 WILD-TYPE" "CXCR7 WILD-TYPE" "CXCR7 WILD-TYPE" 
     TCGA-05-4418      TCGA-05-4420      TCGA-05-4424      TCGA-05-4426 
"CXCR7 WILD-TYPE" "CXCR7 WILD-TYPE" "CXCR7 WILD-TYPE" "CXCR7 WILD-TYPE" 
     TCGA-05-4427      TCGA-05-4430      TCGA-05-4432      TCGA-05-4433 
"CXCR7 WILD-TYPE" "CXCR7 WILD-TYPE" "CXCR7 WILD-TYPE" "CXCR7 WILD-TYPE" 
     TCGA-05-4434      TCGA-05-5420      TCGA-05-5423      TCGA-05-5425 
"CXCR7 WILD-TYPE" "CXCR7 WILD-TYPE" "CXCR7 WILD-TYPE" "CXCR7 WILD-TYPE" 
     TCGA-05-5429      TCGA-05-5715      TCGA-35-3615      TCGA-35-4122 
"CXCR7 WILD-TYPE" "CXCR7 WILD-TYPE" "CXCR7 WILD-TYPE" "CXCR7 WILD-TYPE" 
     TCGA-35-4123      TCGA-35-5375      TCGA-38-4625      TCGA-38-4626 
"CXCR7 WILD-TYPE" "CXCR7 WILD-TYPE" "CXCR7 WILD-TYPE" "CXCR7 WILD-TYPE" 
     TCGA-38-4627      TCGA-38-4628      TCGA-38-4629      TCGA-38-4630 
"CXCR7 WILD-TYPE" "CXCR7 WILD-TYPE" "CXCR7 WILD-TYPE" "CXCR7 WILD-TYPE" 
     TCGA-38-4631      TCGA-38-4632      TCGA-38-6178      TCGA-44-2655 
"CXCR7 WILD-TYPE" "CXCR7 WILD-TYPE" "CXCR7 WILD-TYPE" "CXCR7 WILD-TYPE" 
     TCGA-44-2656      TCGA-44-2657      TCGA-44-2659      TCGA-44-2661 
"CXCR7 WILD-TYPE" "CXCR7 WILD-TYPE" "CXCR7 WILD-TYPE" "CXCR7 WILD-TYPE" 
     TCGA-44-2662      TCGA-44-2665      TCGA-44-2666      TCGA-44-2668 
"CXCR7 WILD-TYPE" "CXCR7 WILD-TYPE" "CXCR7 WILD-TYPE" "CXCR7 WILD-TYPE" 
     TCGA-44-3396      TCGA-44-3398      TCGA-44-3918      TCGA-44-3919 
"CXCR7 WILD-TYPE" "CXCR7 WILD-TYPE" "CXCR7 WILD-TYPE" "CXCR7 WILD-TYPE" 
     TCGA-44-4112      TCGA-44-5643      TCGA-44-5645      TCGA-44-6144 
"CXCR7 WILD-TYPE" "CXCR7 WILD-TYPE" "CXCR7 WILD-TYPE" "CXCR7 WILD-TYPE" 
     TCGA-44-6145      TCGA-44-6146      TCGA-44-6147      TCGA-44-6148 
"CXCR7 WILD-TYPE" "CXCR7 WILD-TYPE" "CXCR7 WILD-TYPE" "CXCR7 WILD-TYPE" 
     TCGA-44-6774      TCGA-44-6775      TCGA-44-6776      TCGA-44-6777 
"CXCR7 WILD-TYPE" "CXCR7 WILD-TYPE" "CXCR7 WILD-TYPE" "CXCR7 WILD-TYPE" 
     TCGA-44-6778      TCGA-44-6779      TCGA-49-4486      TCGA-49-4487 
"CXCR7 WILD-TYPE" "CXCR7 WILD-TYPE" "CXCR7 WILD-TYPE" "CXCR7 WILD-TYPE" 
     TCGA-49-4488      TCGA-49-4490      TCGA-49-4494      TCGA-49-4501 
"CXCR7 WILD-TYPE" "CXCR7 WILD-TYPE" "CXCR7 WILD-TYPE" "CXCR7 WILD-TYPE" 
     TCGA-49-4505      TCGA-49-4506      TCGA-49-4507      TCGA-49-4510 
"CXCR7 WILD-TYPE" "CXCR7 WILD-TYPE" "CXCR7 WILD-TYPE" "CXCR7 WILD-TYPE" 
     TCGA-49-4512      TCGA-49-4514      TCGA-49-6742      TCGA-49-6743 
"CXCR7 WILD-TYPE" "CXCR7 WILD-TYPE" "CXCR7 WILD-TYPE" "CXCR7 WILD-TYPE" 
     TCGA-49-6744      TCGA-49-6745      TCGA-50-5044      TCGA-50-5045 
"CXCR7 WILD-TYPE" "CXCR7 WILD-TYPE" "CXCR7 WILD-TYPE" "CXCR7 WILD-TYPE" 
     TCGA-50-5049      TCGA-50-5051      TCGA-50-5055      TCGA-50-5066 
"CXCR7 WILD-TYPE" "CXCR7 WILD-TYPE" "CXCR7 WILD-TYPE" "CXCR7 WILD-TYPE" 
     TCGA-50-5068      TCGA-50-5072      TCGA-50-5930      TCGA-50-5931 
"CXCR7 WILD-TYPE" "CXCR7 WILD-TYPE" "CXCR7 WILD-TYPE" "CXCR7 WILD-TYPE" 
     TCGA-50-5932      TCGA-50-5933      TCGA-50-5935      TCGA-50-5936 
"CXCR7 WILD-TYPE" "CXCR7 WILD-TYPE" "CXCR7 WILD-TYPE" "CXCR7 WILD-TYPE" 
     TCGA-50-5939      TCGA-50-5941      TCGA-50-5942      TCGA-50-5944 
"CXCR7 WILD-TYPE" "CXCR7 WILD-TYPE" "CXCR7 WILD-TYPE" "CXCR7 WILD-TYPE" 
     TCGA-50-5946      TCGA-50-6590      TCGA-50-6591      TCGA-50-6592 
"CXCR7 WILD-TYPE" "CXCR7 WILD-TYPE" "CXCR7 WILD-TYPE" "CXCR7 WILD-TYPE" 
     TCGA-50-6593      TCGA-50-6594      TCGA-50-6595      TCGA-50-6597 
"CXCR7 WILD-TYPE" "CXCR7 WILD-TYPE" "CXCR7 WILD-TYPE" "CXCR7 WILD-TYPE" 
     TCGA-55-1592      TCGA-55-1594      TCGA-55-1595      TCGA-55-1596 
"CXCR7 WILD-TYPE" "CXCR7 WILD-TYPE" "CXCR7 WILD-TYPE" "CXCR7 WILD-TYPE" 
     TCGA-55-5899      TCGA-55-6543      TCGA-55-6642      TCGA-55-6712 
"CXCR7 WILD-TYPE" "CXCR7 WILD-TYPE" "CXCR7 WILD-TYPE" "CXCR7 WILD-TYPE" 
     TCGA-64-1676      TCGA-64-1677      TCGA-64-1678      TCGA-64-1680 
"CXCR7 WILD-TYPE" "CXCR7 WILD-TYPE" "CXCR7 WILD-TYPE" "CXCR7 WILD-TYPE" 
     TCGA-64-5774      TCGA-64-5775      TCGA-64-5778      TCGA-64-5779 
"CXCR7 WILD-TYPE" "CXCR7 WILD-TYPE" "CXCR7 WILD-TYPE" "CXCR7 WILD-TYPE" 
     TCGA-64-5781      TCGA-64-5815      TCGA-67-3770      TCGA-67-3771 
"CXCR7 WILD-TYPE" "CXCR7 WILD-TYPE" "CXCR7 WILD-TYPE" "CXCR7 WILD-TYPE" 
     TCGA-67-3772      TCGA-67-3773      TCGA-67-3774      TCGA-67-6215 
"CXCR7 WILD-TYPE" "CXCR7 WILD-TYPE" "CXCR7 WILD-TYPE" "CXCR7 WILD-TYPE" 
     TCGA-67-6216      TCGA-67-6217      TCGA-71-6725      TCGA-73-4658 
"CXCR7 WILD-TYPE" "CXCR7 WILD-TYPE" "CXCR7 WILD-TYPE" "CXCR7 WILD-TYPE" 
     TCGA-73-4659      TCGA-73-4662      TCGA-73-4666      TCGA-73-4668 
"CXCR7 WILD-TYPE" "CXCR7 WILD-TYPE" "CXCR7 WILD-TYPE" "CXCR7 WILD-TYPE" 
     TCGA-73-4670      TCGA-73-4675      TCGA-73-4676      TCGA-73-4677 
"CXCR7 WILD-TYPE" "CXCR7 WILD-TYPE" "CXCR7 WILD-TYPE" "CXCR7 WILD-TYPE" 
     TCGA-91-6828      TCGA-91-6829      TCGA-91-6835      TCGA-91-6836 
"CXCR7 WILD-TYPE" "CXCR7 WILD-TYPE" "CXCR7 WILD-TYPE" "CXCR7 WILD-TYPE" 
D206V2, continuous
D206V3, binary
[1] "tbl2"
                 cls
clus              [,1] [,2]
  CXCR7 MUTATED      0    4
  CXCR7 WILD-TYPE   93   75
        clus
vv       CXCR7 MUTATED CXCR7 WILD-TYPE
  FEMALE             0              93
  MALE               4              75
D206V4, continuous
D206V5, multiclass
D206V6, multiclass
    clus
vv   CXCR7 MUTATED CXCR7 WILD-TYPE
  T1             0              41
  T2             3             105
  T3             1              13
  T4             0               8
D206V7, multiclass
       clus
vv      CXCR7 MUTATED CXCR7 WILD-TYPE
  N0                3              92
  N1                1              36
  N2+N3             0              35
D206V8, multiclass
    clus
vv   CXCR7 MUTATED CXCR7 WILD-TYPE
  M0             3             134
  M1             0               9
  MX             1              21
D206V9, multiclass
     clus
vv    CXCR7 MUTATED CXCR7 WILD-TYPE
  I               3              85
  II              1              32
  III             0              39
  IV              0               9
D206V10, binary
[1] "tbl2"
                 cls
clus              [,1] [,2]
  CXCR7 MUTATED      0    4
  CXCR7 WILD-TYPE   16  152
     clus
vv    CXCR7 MUTATED CXCR7 WILD-TYPE
  NO              0              16
  YES             4             152
D206V11, continuous
[1] "Remove cluster labels:" "CXCR7 MUTATED"         
clus
  CXCR7 MUTATED CXCR7 WILD-TYPE 
              2             112 
     TCGA-05-4244      TCGA-05-4249      TCGA-05-4250      TCGA-05-4382 
"CXCR7 WILD-TYPE" "CXCR7 WILD-TYPE" "CXCR7 WILD-TYPE" "CXCR7 WILD-TYPE" 
     TCGA-05-4384      TCGA-05-4389      TCGA-05-4390      TCGA-05-4395 
"CXCR7 WILD-TYPE" "CXCR7 WILD-TYPE" "CXCR7 WILD-TYPE" "CXCR7 WILD-TYPE" 
     TCGA-05-4396      TCGA-05-4397      TCGA-05-4398      TCGA-05-4402 
"CXCR7 WILD-TYPE" "CXCR7 WILD-TYPE" "CXCR7 WILD-TYPE" "CXCR7 WILD-TYPE" 
     TCGA-05-4405      TCGA-05-4415      TCGA-05-4417      TCGA-05-4418 
"CXCR7 WILD-TYPE" "CXCR7 WILD-TYPE" "CXCR7 WILD-TYPE" "CXCR7 WILD-TYPE" 
     TCGA-05-4420      TCGA-05-4422      TCGA-05-4424      TCGA-05-4425 
"CXCR7 WILD-TYPE" "CXCR7 WILD-TYPE" "CXCR7 WILD-TYPE" "CXCR7 WILD-TYPE" 
     TCGA-05-4426      TCGA-05-4427      TCGA-05-4430      TCGA-05-4432 
"CXCR7 WILD-TYPE" "CXCR7 WILD-TYPE" "CXCR7 WILD-TYPE" "CXCR7 WILD-TYPE" 
     TCGA-05-4433      TCGA-05-4434      TCGA-05-5420      TCGA-05-5423 
"CXCR7 WILD-TYPE" "CXCR7 WILD-TYPE" "CXCR7 WILD-TYPE" "CXCR7 WILD-TYPE" 
     TCGA-05-5425      TCGA-05-5428      TCGA-35-4122      TCGA-35-4123 
"CXCR7 WILD-TYPE" "CXCR7 WILD-TYPE" "CXCR7 WILD-TYPE" "CXCR7 WILD-TYPE" 
     TCGA-35-5375      TCGA-38-4625      TCGA-38-4626      TCGA-38-4629 
"CXCR7 WILD-TYPE" "CXCR7 WILD-TYPE" "CXCR7 WILD-TYPE" "CXCR7 WILD-TYPE" 
     TCGA-38-4631      TCGA-38-4632      TCGA-44-2655      TCGA-44-2656 
"CXCR7 WILD-TYPE" "CXCR7 WILD-TYPE" "CXCR7 WILD-TYPE" "CXCR7 WILD-TYPE" 
     TCGA-44-2657      TCGA-44-2659      TCGA-44-2662      TCGA-44-2666 
"CXCR7 WILD-TYPE" "CXCR7 WILD-TYPE" "CXCR7 WILD-TYPE" "CXCR7 WILD-TYPE" 
     TCGA-44-2668      TCGA-44-3396      TCGA-44-3398      TCGA-44-3918 
"CXCR7 WILD-TYPE" "CXCR7 WILD-TYPE" "CXCR7 WILD-TYPE" "CXCR7 WILD-TYPE" 
     TCGA-44-4112      TCGA-44-5643      TCGA-44-5645      TCGA-44-6144 
"CXCR7 WILD-TYPE" "CXCR7 WILD-TYPE" "CXCR7 WILD-TYPE" "CXCR7 WILD-TYPE" 
     TCGA-44-6145      TCGA-44-6146      TCGA-44-6148      TCGA-44-6774 
"CXCR7 WILD-TYPE" "CXCR7 WILD-TYPE" "CXCR7 WILD-TYPE" "CXCR7 WILD-TYPE" 
     TCGA-44-6775      TCGA-44-6776      TCGA-44-6777      TCGA-44-6778 
"CXCR7 WILD-TYPE" "CXCR7 WILD-TYPE" "CXCR7 WILD-TYPE" "CXCR7 WILD-TYPE" 
     TCGA-44-6779      TCGA-49-4486      TCGA-49-4487      TCGA-49-4490 
"CXCR7 WILD-TYPE" "CXCR7 WILD-TYPE" "CXCR7 WILD-TYPE" "CXCR7 WILD-TYPE" 
     TCGA-49-4494      TCGA-49-4505      TCGA-49-4506      TCGA-49-4507 
"CXCR7 WILD-TYPE" "CXCR7 WILD-TYPE" "CXCR7 WILD-TYPE" "CXCR7 WILD-TYPE" 
     TCGA-49-4510      TCGA-49-4514      TCGA-49-6742      TCGA-49-6743 
"CXCR7 WILD-TYPE" "CXCR7 WILD-TYPE" "CXCR7 WILD-TYPE" "CXCR7 WILD-TYPE" 
     TCGA-49-6744      TCGA-49-6745      TCGA-49-6767      TCGA-50-5051 
"CXCR7 WILD-TYPE" "CXCR7 WILD-TYPE" "CXCR7 WILD-TYPE" "CXCR7 WILD-TYPE" 
     TCGA-50-5072      TCGA-50-5931      TCGA-50-5939      TCGA-50-5941 
"CXCR7 WILD-TYPE" "CXCR7 WILD-TYPE" "CXCR7 WILD-TYPE" "CXCR7 WILD-TYPE" 
     TCGA-50-5942      TCGA-50-6590      TCGA-55-1596      TCGA-55-6543 
"CXCR7 WILD-TYPE" "CXCR7 WILD-TYPE" "CXCR7 WILD-TYPE" "CXCR7 WILD-TYPE" 
     TCGA-64-1676      TCGA-64-1677      TCGA-64-1678      TCGA-64-1680 
"CXCR7 WILD-TYPE" "CXCR7 WILD-TYPE" "CXCR7 WILD-TYPE" "CXCR7 WILD-TYPE" 
     TCGA-64-5774      TCGA-64-5775      TCGA-64-5778      TCGA-64-5779 
"CXCR7 WILD-TYPE" "CXCR7 WILD-TYPE" "CXCR7 WILD-TYPE" "CXCR7 WILD-TYPE" 
     TCGA-64-5781      TCGA-64-5815      TCGA-73-4658      TCGA-73-4659 
"CXCR7 WILD-TYPE" "CXCR7 WILD-TYPE" "CXCR7 WILD-TYPE" "CXCR7 WILD-TYPE" 
     TCGA-73-4662      TCGA-73-4666      TCGA-73-4668      TCGA-73-4670 
"CXCR7 WILD-TYPE" "CXCR7 WILD-TYPE" "CXCR7 WILD-TYPE" "CXCR7 WILD-TYPE" 
     TCGA-73-4675      TCGA-73-4676      TCGA-75-5122      TCGA-75-5126 
"CXCR7 WILD-TYPE" "CXCR7 WILD-TYPE" "CXCR7 WILD-TYPE" "CXCR7 WILD-TYPE" 
     TCGA-75-6203      TCGA-75-6206      TCGA-75-6207      TCGA-75-6211 
"CXCR7 WILD-TYPE" "CXCR7 WILD-TYPE" "CXCR7 WILD-TYPE" "CXCR7 WILD-TYPE" 
     TCGA-80-5611      TCGA-91-6829      TCGA-91-6835      TCGA-91-6836 
"CXCR7 WILD-TYPE" "CXCR7 WILD-TYPE" "CXCR7 WILD-TYPE" "CXCR7 WILD-TYPE" 
D206V12, continuous
[1] "Remove cluster labels:" "CXCR7 MUTATED"         
clus
  CXCR7 MUTATED CXCR7 WILD-TYPE 
              2              80 
     TCGA-05-4384      TCGA-05-4390      TCGA-05-4396      TCGA-05-4403 
"CXCR7 WILD-TYPE" "CXCR7 WILD-TYPE" "CXCR7 WILD-TYPE" "CXCR7 WILD-TYPE" 
     TCGA-05-4405      TCGA-05-4415      TCGA-05-4417      TCGA-05-4424 
"CXCR7 WILD-TYPE" "CXCR7 WILD-TYPE" "CXCR7 WILD-TYPE" "CXCR7 WILD-TYPE" 
     TCGA-05-4427      TCGA-05-4433      TCGA-05-5420      TCGA-05-5423 
"CXCR7 WILD-TYPE" "CXCR7 WILD-TYPE" "CXCR7 WILD-TYPE" "CXCR7 WILD-TYPE" 
     TCGA-05-5425      TCGA-05-5428      TCGA-35-4122      TCGA-35-4123 
"CXCR7 WILD-TYPE" "CXCR7 WILD-TYPE" "CXCR7 WILD-TYPE" "CXCR7 WILD-TYPE" 
     TCGA-35-5375      TCGA-38-4629      TCGA-38-4632      TCGA-44-2655 
"CXCR7 WILD-TYPE" "CXCR7 WILD-TYPE" "CXCR7 WILD-TYPE" "CXCR7 WILD-TYPE" 
     TCGA-44-2656      TCGA-44-2657      TCGA-44-2659      TCGA-44-2662 
"CXCR7 WILD-TYPE" "CXCR7 WILD-TYPE" "CXCR7 WILD-TYPE" "CXCR7 WILD-TYPE" 
     TCGA-44-2668      TCGA-44-3398      TCGA-44-3918      TCGA-44-4112 
"CXCR7 WILD-TYPE" "CXCR7 WILD-TYPE" "CXCR7 WILD-TYPE" "CXCR7 WILD-TYPE" 
     TCGA-44-5645      TCGA-44-6145      TCGA-44-6146      TCGA-44-6147 
"CXCR7 WILD-TYPE" "CXCR7 WILD-TYPE" "CXCR7 WILD-TYPE" "CXCR7 WILD-TYPE" 
     TCGA-44-6148      TCGA-44-6775      TCGA-44-6776      TCGA-44-6777 
"CXCR7 WILD-TYPE" "CXCR7 WILD-TYPE" "CXCR7 WILD-TYPE" "CXCR7 WILD-TYPE" 
     TCGA-44-6778      TCGA-44-6779      TCGA-49-4486      TCGA-49-4488 
"CXCR7 WILD-TYPE" "CXCR7 WILD-TYPE" "CXCR7 WILD-TYPE" "CXCR7 WILD-TYPE" 
     TCGA-49-4494      TCGA-49-4505      TCGA-49-4507      TCGA-50-5051 
"CXCR7 WILD-TYPE" "CXCR7 WILD-TYPE" "CXCR7 WILD-TYPE" "CXCR7 WILD-TYPE" 
     TCGA-50-5072      TCGA-50-5939      TCGA-50-5942      TCGA-50-5946 
"CXCR7 WILD-TYPE" "CXCR7 WILD-TYPE" "CXCR7 WILD-TYPE" "CXCR7 WILD-TYPE" 
     TCGA-50-6590      TCGA-50-6594      TCGA-50-6595      TCGA-55-1592 
"CXCR7 WILD-TYPE" "CXCR7 WILD-TYPE" "CXCR7 WILD-TYPE" "CXCR7 WILD-TYPE" 
     TCGA-55-1595      TCGA-55-6543      TCGA-55-6712      TCGA-64-1678 
"CXCR7 WILD-TYPE" "CXCR7 WILD-TYPE" "CXCR7 WILD-TYPE" "CXCR7 WILD-TYPE" 
     TCGA-64-1680      TCGA-64-5774      TCGA-64-5778      TCGA-64-5779 
"CXCR7 WILD-TYPE" "CXCR7 WILD-TYPE" "CXCR7 WILD-TYPE" "CXCR7 WILD-TYPE" 
     TCGA-64-5781      TCGA-64-5815      TCGA-67-6217      TCGA-73-4659 
"CXCR7 WILD-TYPE" "CXCR7 WILD-TYPE" "CXCR7 WILD-TYPE" "CXCR7 WILD-TYPE" 
     TCGA-73-4662      TCGA-73-4666      TCGA-73-4668      TCGA-73-4670 
"CXCR7 WILD-TYPE" "CXCR7 WILD-TYPE" "CXCR7 WILD-TYPE" "CXCR7 WILD-TYPE" 
     TCGA-73-4675      TCGA-73-4676      TCGA-73-4677      TCGA-75-5122 
"CXCR7 WILD-TYPE" "CXCR7 WILD-TYPE" "CXCR7 WILD-TYPE" "CXCR7 WILD-TYPE" 
     TCGA-75-5126      TCGA-75-5146      TCGA-75-6206      TCGA-75-6207 
"CXCR7 WILD-TYPE" "CXCR7 WILD-TYPE" "CXCR7 WILD-TYPE" "CXCR7 WILD-TYPE" 
     TCGA-80-5611      TCGA-91-6828      TCGA-91-6829      TCGA-91-6835 
"CXCR7 WILD-TYPE" "CXCR7 WILD-TYPE" "CXCR7 WILD-TYPE" "CXCR7 WILD-TYPE" 
D206V13, multiclass
                                             clus
vv                                            CXCR7 MUTATED CXCR7 WILD-TYPE
  CURRENT REFORMED SMOKER FOR < OR = 15 YEARS             2              60
  CURRENT REFORMED SMOKER FOR > 15 YEARS                  1              45
  CURRENT SMOKER                                          1              27
  LIFELONG NON-SMOKER                                     0              24
D206V14, continuous
[1] "Remove cluster labels:" "CXCR7 MUTATED"         
clus
  CXCR7 MUTATED CXCR7 WILD-TYPE 
              1              67 
     TCGA-05-4384      TCGA-05-4390      TCGA-05-4396      TCGA-05-4405 
"CXCR7 WILD-TYPE" "CXCR7 WILD-TYPE" "CXCR7 WILD-TYPE" "CXCR7 WILD-TYPE" 
     TCGA-05-4415      TCGA-05-4417      TCGA-05-4424      TCGA-05-4427 
"CXCR7 WILD-TYPE" "CXCR7 WILD-TYPE" "CXCR7 WILD-TYPE" "CXCR7 WILD-TYPE" 
     TCGA-05-4433      TCGA-05-5420      TCGA-05-5423      TCGA-05-5425 
"CXCR7 WILD-TYPE" "CXCR7 WILD-TYPE" "CXCR7 WILD-TYPE" "CXCR7 WILD-TYPE" 
     TCGA-05-5428      TCGA-35-4122      TCGA-35-4123      TCGA-35-5375 
"CXCR7 WILD-TYPE" "CXCR7 WILD-TYPE" "CXCR7 WILD-TYPE" "CXCR7 WILD-TYPE" 
     TCGA-38-4625      TCGA-38-4626      TCGA-44-2655      TCGA-44-2656 
"CXCR7 WILD-TYPE" "CXCR7 WILD-TYPE" "CXCR7 WILD-TYPE" "CXCR7 WILD-TYPE" 
     TCGA-44-2657      TCGA-44-2659      TCGA-44-2662      TCGA-44-2666 
"CXCR7 WILD-TYPE" "CXCR7 WILD-TYPE" "CXCR7 WILD-TYPE" "CXCR7 WILD-TYPE" 
     TCGA-44-2668      TCGA-44-3396      TCGA-44-3398      TCGA-44-3918 
"CXCR7 WILD-TYPE" "CXCR7 WILD-TYPE" "CXCR7 WILD-TYPE" "CXCR7 WILD-TYPE" 
     TCGA-44-4112      TCGA-44-5645      TCGA-44-6144      TCGA-44-6145 
"CXCR7 WILD-TYPE" "CXCR7 WILD-TYPE" "CXCR7 WILD-TYPE" "CXCR7 WILD-TYPE" 
     TCGA-44-6147      TCGA-44-6148      TCGA-44-6774      TCGA-44-6775 
"CXCR7 WILD-TYPE" "CXCR7 WILD-TYPE" "CXCR7 WILD-TYPE" "CXCR7 WILD-TYPE" 
     TCGA-44-6776      TCGA-44-6777      TCGA-44-6778      TCGA-44-6779 
"CXCR7 WILD-TYPE" "CXCR7 WILD-TYPE" "CXCR7 WILD-TYPE" "CXCR7 WILD-TYPE" 
     TCGA-49-4486      TCGA-49-4494      TCGA-49-4505      TCGA-55-1592 
"CXCR7 WILD-TYPE" "CXCR7 WILD-TYPE" "CXCR7 WILD-TYPE" "CXCR7 WILD-TYPE" 
     TCGA-55-1594      TCGA-55-1595      TCGA-55-1596      TCGA-55-5899 
"CXCR7 WILD-TYPE" "CXCR7 WILD-TYPE" "CXCR7 WILD-TYPE" "CXCR7 WILD-TYPE" 
     TCGA-55-6642      TCGA-55-6712      TCGA-64-1677      TCGA-64-1678 
"CXCR7 WILD-TYPE" "CXCR7 WILD-TYPE" "CXCR7 WILD-TYPE" "CXCR7 WILD-TYPE" 
     TCGA-64-1680      TCGA-64-5774      TCGA-64-5775      TCGA-64-5778 
"CXCR7 WILD-TYPE" "CXCR7 WILD-TYPE" "CXCR7 WILD-TYPE" "CXCR7 WILD-TYPE" 
     TCGA-64-5779      TCGA-64-5781      TCGA-73-4659      TCGA-73-4662 
"CXCR7 WILD-TYPE" "CXCR7 WILD-TYPE" "CXCR7 WILD-TYPE" "CXCR7 WILD-TYPE" 
     TCGA-73-4666      TCGA-73-4668      TCGA-73-4670      TCGA-73-4675 
"CXCR7 WILD-TYPE" "CXCR7 WILD-TYPE" "CXCR7 WILD-TYPE" "CXCR7 WILD-TYPE" 
     TCGA-73-4676      TCGA-91-6829      TCGA-91-6836 
"CXCR7 WILD-TYPE" "CXCR7 WILD-TYPE" "CXCR7 WILD-TYPE" 

Clustering(207) Variable = PTH MUTATION ANALYSIS
D207V1, survival
               sevent
clus2            0  1
  PTH MUTATED    1  2
  PTH WILD-TYPE 98 48
  PTH MUTATED PTH WILD-TYPE 
            3           146 
  PTH MUTATED PTH WILD-TYPE 
            2            48 
$`PTH MUTATED`
TCGA-05-4415 TCGA-44-2657 TCGA-49-4505 
        2.96        13.15        14.07 

$`PTH WILD-TYPE`
TCGA-05-4249 TCGA-05-4250 TCGA-05-4382 TCGA-05-4384 TCGA-05-4390 TCGA-05-4396 
       38.07         3.98        19.92        14.01        37.02         9.96 
TCGA-05-4397 TCGA-05-4398 TCGA-05-4402 TCGA-05-4405 TCGA-05-4417 TCGA-05-4418 
       24.03        47.05         8.02        20.05        14.93         8.98 
TCGA-05-4420 TCGA-05-4424 TCGA-05-4426 TCGA-05-4427 TCGA-05-4430 TCGA-05-4432 
       29.95        30.02        26.01        26.01        25.02        25.02 
TCGA-05-4433 TCGA-05-4434 TCGA-05-5420 TCGA-05-5423 TCGA-05-5425 TCGA-05-5429 
       24.00        15.02         1.02         4.96         2.96         0.99 
TCGA-05-5715 TCGA-35-3615 TCGA-35-4122 TCGA-35-4123 TCGA-35-5375 TCGA-38-4625 
        2.04         0.46         7.36         5.95         8.68        47.61 
TCGA-38-4626 TCGA-38-4627 TCGA-38-4628 TCGA-38-4629 TCGA-38-4630 TCGA-38-4631 
       85.32        37.71        49.02        28.37        35.28        11.64 
TCGA-38-4632 TCGA-38-6178 TCGA-44-2655 TCGA-44-2656 TCGA-44-2659 TCGA-44-2661 
       44.61         5.19        18.87        19.10        17.39         3.39 
TCGA-44-2662 TCGA-44-2665 TCGA-44-2666 TCGA-44-2668 TCGA-44-3396 TCGA-44-3398 
       15.78        13.15         3.19         8.09        10.22         8.32 
TCGA-44-3918 TCGA-44-3919 TCGA-44-4112 TCGA-44-5643 TCGA-44-5645 TCGA-44-6144 
        6.44         6.21         4.60         3.48         6.84         0.30 
TCGA-44-6145 TCGA-44-6146 TCGA-44-6147 TCGA-44-6148 TCGA-44-6774 TCGA-44-6775 
        3.35         9.93         7.76         3.12         5.42         2.70 
TCGA-44-6776 TCGA-44-6777 TCGA-44-6778 TCGA-44-6779 TCGA-49-4486 TCGA-49-4487 
       63.72        32.45        36.49        16.41        76.21        28.11 
TCGA-49-4488 TCGA-49-4490 TCGA-49-4494 TCGA-49-4501 TCGA-49-4506 TCGA-49-4507 
       28.57        12.66        35.54        46.72        32.84         8.81 
TCGA-49-4510 TCGA-49-4512 TCGA-49-4514 TCGA-49-6742 TCGA-49-6743 TCGA-49-6744 
       29.46        29.75        43.20        15.02        12.13        12.99 
TCGA-49-6745 TCGA-50-5044 TCGA-50-5045 TCGA-50-5049 TCGA-50-5051 TCGA-50-5055 
        4.93        20.48        71.47        48.82        14.96        25.81 
TCGA-50-5066 TCGA-50-5068 TCGA-50-5072 TCGA-50-5930 TCGA-50-5931 TCGA-50-5932 
        9.76        49.28         8.05         9.27         8.78        35.87 
TCGA-50-5933 TCGA-50-5935 TCGA-50-5936 TCGA-50-5939 TCGA-50-5941 TCGA-50-5942 
       77.88        21.47         8.45        15.12         9.37         4.44 
TCGA-50-5944 TCGA-50-5946 TCGA-50-6590 TCGA-50-6591 TCGA-50-6592 TCGA-50-6593 
       12.26        11.47        42.31         3.88        25.51        11.05 
TCGA-50-6594 TCGA-50-6595 TCGA-50-6597 TCGA-55-1592 TCGA-55-1594 TCGA-55-1595 
       12.16         6.21        33.37        23.05        38.73        48.62 
TCGA-55-1596 TCGA-55-5899 TCGA-55-6543 TCGA-55-6642 TCGA-55-6712 TCGA-64-1676 
       45.17         2.86         0.07        32.61         0.79        56.81 
TCGA-64-1677 TCGA-64-1678 TCGA-64-1680 TCGA-64-5774 TCGA-64-5775 TCGA-64-5778 
       20.65        39.09        37.02        83.84         0.10        30.44 
TCGA-64-5779 TCGA-64-5781 TCGA-64-5815 TCGA-67-3770 TCGA-67-3771 TCGA-67-3772 
       16.67        39.52         7.33         0.99         1.97         0.59 
TCGA-67-3773 TCGA-67-3774 TCGA-67-6215 TCGA-67-6216 TCGA-67-6217 TCGA-71-6725 
        2.04         0.59         0.89         0.69        13.87         2.01 
TCGA-73-4658 TCGA-73-4659 TCGA-73-4662 TCGA-73-4666 TCGA-73-4668 TCGA-73-4670 
       52.57        23.38        29.95        20.28        15.35         0.46 
TCGA-73-4675 TCGA-73-4676 TCGA-73-4677 TCGA-91-6828 TCGA-91-6829 TCGA-91-6831 
        1.32         4.01         1.25         1.22        41.33         1.28 
TCGA-91-6835 TCGA-91-6836 
        1.15         0.36 

  PTH MUTATED PTH WILD-TYPE 
         2.96          0.07 
  PTH MUTATED PTH WILD-TYPE 
        14.07         85.32 
  PTH MUTATED PTH WILD-TYPE 
        13.15         13.94 
[1] "3.0 - 14.1 (13.2)" "0.1 - 85.3 (13.9)"
   TCGA-05-4249    TCGA-05-4250    TCGA-05-4382    TCGA-05-4384    TCGA-05-4390 
"PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" 
   TCGA-05-4396    TCGA-05-4397    TCGA-05-4398    TCGA-05-4402    TCGA-05-4405 
"PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" 
   TCGA-05-4415    TCGA-05-4417    TCGA-05-4418    TCGA-05-4420    TCGA-05-4424 
  "PTH MUTATED" "PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" 
   TCGA-05-4426    TCGA-05-4427    TCGA-05-4430    TCGA-05-4432    TCGA-05-4433 
"PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" 
   TCGA-05-4434    TCGA-05-5420    TCGA-05-5423    TCGA-05-5425    TCGA-05-5429 
"PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" 
   TCGA-05-5715    TCGA-35-3615    TCGA-35-4122    TCGA-35-4123    TCGA-35-5375 
"PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" 
   TCGA-38-4625    TCGA-38-4626    TCGA-38-4627    TCGA-38-4628    TCGA-38-4629 
"PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" 
   TCGA-38-4630    TCGA-38-4631    TCGA-38-4632    TCGA-38-6178    TCGA-44-2655 
"PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" 
   TCGA-44-2656    TCGA-44-2657    TCGA-44-2659    TCGA-44-2661    TCGA-44-2662 
"PTH WILD-TYPE"   "PTH MUTATED" "PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" 
   TCGA-44-2665    TCGA-44-2666    TCGA-44-2668    TCGA-44-3396    TCGA-44-3398 
"PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" 
   TCGA-44-3918    TCGA-44-3919    TCGA-44-4112    TCGA-44-5643    TCGA-44-5645 
"PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" 
   TCGA-44-6144    TCGA-44-6145    TCGA-44-6146    TCGA-44-6147    TCGA-44-6148 
"PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" 
   TCGA-44-6774    TCGA-44-6775    TCGA-44-6776    TCGA-44-6777    TCGA-44-6778 
"PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" 
   TCGA-44-6779    TCGA-49-4486    TCGA-49-4487    TCGA-49-4488    TCGA-49-4490 
"PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" 
   TCGA-49-4494    TCGA-49-4501    TCGA-49-4505    TCGA-49-4506    TCGA-49-4507 
"PTH WILD-TYPE" "PTH WILD-TYPE"   "PTH MUTATED" "PTH WILD-TYPE" "PTH WILD-TYPE" 
   TCGA-49-4510    TCGA-49-4512    TCGA-49-4514    TCGA-49-6742    TCGA-49-6743 
"PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" 
   TCGA-49-6744    TCGA-49-6745    TCGA-50-5044    TCGA-50-5045    TCGA-50-5049 
"PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" 
   TCGA-50-5051    TCGA-50-5055    TCGA-50-5066    TCGA-50-5068    TCGA-50-5072 
"PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" 
   TCGA-50-5930    TCGA-50-5931    TCGA-50-5932    TCGA-50-5933    TCGA-50-5935 
"PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" 
   TCGA-50-5936    TCGA-50-5939    TCGA-50-5941    TCGA-50-5942    TCGA-50-5944 
"PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" 
   TCGA-50-5946    TCGA-50-6590    TCGA-50-6591    TCGA-50-6592    TCGA-50-6593 
"PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" 
   TCGA-50-6594    TCGA-50-6595    TCGA-50-6597    TCGA-55-1592    TCGA-55-1594 
"PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" 
   TCGA-55-1595    TCGA-55-1596    TCGA-55-5899    TCGA-55-6543    TCGA-55-6642 
"PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" 
   TCGA-55-6712    TCGA-64-1676    TCGA-64-1677    TCGA-64-1678    TCGA-64-1680 
"PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" 
   TCGA-64-5774    TCGA-64-5775    TCGA-64-5778    TCGA-64-5779    TCGA-64-5781 
"PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" 
   TCGA-64-5815    TCGA-67-3770    TCGA-67-3771    TCGA-67-3772    TCGA-67-3773 
"PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" 
   TCGA-67-3774    TCGA-67-6215    TCGA-67-6216    TCGA-67-6217    TCGA-71-6725 
"PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" 
   TCGA-73-4658    TCGA-73-4659    TCGA-73-4662    TCGA-73-4666    TCGA-73-4668 
"PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" 
   TCGA-73-4670    TCGA-73-4675    TCGA-73-4676    TCGA-73-4677    TCGA-91-6828 
"PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" 
   TCGA-91-6829    TCGA-91-6831    TCGA-91-6835    TCGA-91-6836 
"PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" 
   TCGA-05-4249    TCGA-05-4250    TCGA-05-4382    TCGA-05-4384    TCGA-05-4390 
"PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" 
   TCGA-05-4396    TCGA-05-4397    TCGA-05-4398    TCGA-05-4402    TCGA-05-4405 
"PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" 
   TCGA-05-4415    TCGA-05-4417    TCGA-05-4418    TCGA-05-4420    TCGA-05-4424 
  "PTH MUTATED" "PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" 
   TCGA-05-4426    TCGA-05-4427    TCGA-05-4430    TCGA-05-4432    TCGA-05-4433 
"PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" 
   TCGA-05-4434    TCGA-05-5420    TCGA-05-5423    TCGA-05-5425    TCGA-05-5429 
"PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" 
   TCGA-05-5715    TCGA-35-3615    TCGA-35-4122    TCGA-35-4123    TCGA-35-5375 
"PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" 
   TCGA-38-4625    TCGA-38-4626    TCGA-38-4627    TCGA-38-4628    TCGA-38-4629 
"PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" 
   TCGA-38-4630    TCGA-38-4631    TCGA-38-4632    TCGA-38-6178    TCGA-44-2655 
"PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" 
   TCGA-44-2656    TCGA-44-2657    TCGA-44-2659    TCGA-44-2661    TCGA-44-2662 
"PTH WILD-TYPE"   "PTH MUTATED" "PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" 
   TCGA-44-2665    TCGA-44-2666    TCGA-44-2668    TCGA-44-3396    TCGA-44-3398 
"PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" 
   TCGA-44-3918    TCGA-44-3919    TCGA-44-4112    TCGA-44-5643    TCGA-44-5645 
"PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" 
   TCGA-44-6144    TCGA-44-6145    TCGA-44-6146    TCGA-44-6147    TCGA-44-6148 
"PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" 
   TCGA-44-6774    TCGA-44-6775    TCGA-44-6776    TCGA-44-6777    TCGA-44-6778 
"PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" 
   TCGA-44-6779    TCGA-49-4486    TCGA-49-4487    TCGA-49-4488    TCGA-49-4490 
"PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" 
   TCGA-49-4494    TCGA-49-4501    TCGA-49-4505    TCGA-49-4506    TCGA-49-4507 
"PTH WILD-TYPE" "PTH WILD-TYPE"   "PTH MUTATED" "PTH WILD-TYPE" "PTH WILD-TYPE" 
   TCGA-49-4510    TCGA-49-4512    TCGA-49-4514    TCGA-49-6742    TCGA-49-6743 
"PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" 
   TCGA-49-6744    TCGA-49-6745    TCGA-50-5044    TCGA-50-5045    TCGA-50-5049 
"PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" 
   TCGA-50-5051    TCGA-50-5055    TCGA-50-5066    TCGA-50-5068    TCGA-50-5072 
"PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" 
   TCGA-50-5930    TCGA-50-5931    TCGA-50-5932    TCGA-50-5933    TCGA-50-5935 
"PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" 
   TCGA-50-5936    TCGA-50-5939    TCGA-50-5941    TCGA-50-5942    TCGA-50-5944 
"PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" 
   TCGA-50-5946    TCGA-50-6590    TCGA-50-6591    TCGA-50-6592    TCGA-50-6593 
"PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" 
   TCGA-50-6594    TCGA-50-6595    TCGA-50-6597    TCGA-55-1592    TCGA-55-1594 
"PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" 
   TCGA-55-1595    TCGA-55-1596    TCGA-55-5899    TCGA-55-6543    TCGA-55-6642 
"PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" 
   TCGA-55-6712    TCGA-64-1676    TCGA-64-1677    TCGA-64-1678    TCGA-64-1680 
"PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" 
   TCGA-64-5774    TCGA-64-5775    TCGA-64-5778    TCGA-64-5779    TCGA-64-5781 
"PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" 
   TCGA-64-5815    TCGA-67-3770    TCGA-67-3771    TCGA-67-3772    TCGA-67-3773 
"PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" 
   TCGA-67-3774    TCGA-67-6215    TCGA-67-6216    TCGA-67-6217    TCGA-71-6725 
"PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" 
   TCGA-73-4658    TCGA-73-4659    TCGA-73-4662    TCGA-73-4666    TCGA-73-4668 
"PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" 
   TCGA-73-4670    TCGA-73-4675    TCGA-73-4676    TCGA-73-4677    TCGA-91-6828 
"PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" 
   TCGA-91-6829    TCGA-91-6831    TCGA-91-6835    TCGA-91-6836 
"PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" 
   TCGA-05-4249    TCGA-05-4250    TCGA-05-4382    TCGA-05-4384    TCGA-05-4390 
"PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" 
   TCGA-05-4396    TCGA-05-4397    TCGA-05-4398    TCGA-05-4402    TCGA-05-4405 
"PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" 
   TCGA-05-4415    TCGA-05-4417    TCGA-05-4418    TCGA-05-4420    TCGA-05-4424 
  "PTH MUTATED" "PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" 
   TCGA-05-4426    TCGA-05-4427    TCGA-05-4430    TCGA-05-4432    TCGA-05-4433 
"PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" 
   TCGA-05-4434    TCGA-05-5420    TCGA-05-5423    TCGA-05-5425    TCGA-05-5429 
"PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" 
   TCGA-05-5715    TCGA-35-3615    TCGA-35-4122    TCGA-35-4123    TCGA-35-5375 
"PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" 
   TCGA-38-4625    TCGA-38-4626    TCGA-38-4627    TCGA-38-4628    TCGA-38-4629 
"PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" 
   TCGA-38-4630    TCGA-38-4631    TCGA-38-4632    TCGA-38-6178    TCGA-44-2655 
"PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" 
   TCGA-44-2656    TCGA-44-2657    TCGA-44-2659    TCGA-44-2661    TCGA-44-2662 
"PTH WILD-TYPE"   "PTH MUTATED" "PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" 
   TCGA-44-2665    TCGA-44-2666    TCGA-44-2668    TCGA-44-3396    TCGA-44-3398 
"PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" 
   TCGA-44-3918    TCGA-44-3919    TCGA-44-4112    TCGA-44-5643    TCGA-44-5645 
"PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" 
   TCGA-44-6144    TCGA-44-6145    TCGA-44-6146    TCGA-44-6147    TCGA-44-6148 
"PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" 
   TCGA-44-6774    TCGA-44-6775    TCGA-44-6776    TCGA-44-6777    TCGA-44-6778 
"PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" 
   TCGA-44-6779    TCGA-49-4486    TCGA-49-4487    TCGA-49-4488    TCGA-49-4490 
"PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" 
   TCGA-49-4494    TCGA-49-4501    TCGA-49-4505    TCGA-49-4506    TCGA-49-4507 
"PTH WILD-TYPE" "PTH WILD-TYPE"   "PTH MUTATED" "PTH WILD-TYPE" "PTH WILD-TYPE" 
   TCGA-49-4510    TCGA-49-4512    TCGA-49-4514    TCGA-49-6742    TCGA-49-6743 
"PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" 
   TCGA-49-6744    TCGA-49-6745    TCGA-50-5044    TCGA-50-5045    TCGA-50-5049 
"PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" 
   TCGA-50-5051    TCGA-50-5055    TCGA-50-5066    TCGA-50-5068    TCGA-50-5072 
"PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" 
   TCGA-50-5930    TCGA-50-5931    TCGA-50-5932    TCGA-50-5933    TCGA-50-5935 
"PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" 
   TCGA-50-5936    TCGA-50-5939    TCGA-50-5941    TCGA-50-5942    TCGA-50-5944 
"PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" 
   TCGA-50-5946    TCGA-50-6590    TCGA-50-6591    TCGA-50-6592    TCGA-50-6593 
"PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" 
   TCGA-50-6594    TCGA-50-6595    TCGA-50-6597    TCGA-55-1592    TCGA-55-1594 
"PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" 
   TCGA-55-1595    TCGA-55-1596    TCGA-55-5899    TCGA-55-6543    TCGA-55-6642 
"PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" 
   TCGA-55-6712    TCGA-64-1676    TCGA-64-1677    TCGA-64-1678    TCGA-64-1680 
"PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" 
   TCGA-64-5774    TCGA-64-5775    TCGA-64-5778    TCGA-64-5779    TCGA-64-5781 
"PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" 
   TCGA-64-5815    TCGA-67-3770    TCGA-67-3771    TCGA-67-3772    TCGA-67-3773 
"PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" 
   TCGA-67-3774    TCGA-67-6215    TCGA-67-6216    TCGA-67-6217    TCGA-71-6725 
"PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" 
   TCGA-73-4658    TCGA-73-4659    TCGA-73-4662    TCGA-73-4666    TCGA-73-4668 
"PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" 
   TCGA-73-4670    TCGA-73-4675    TCGA-73-4676    TCGA-73-4677    TCGA-91-6828 
"PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" 
   TCGA-91-6829    TCGA-91-6831    TCGA-91-6835    TCGA-91-6836 
"PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" 
[1] "hr=" "5.5"
D207V2, continuous
D207V3, binary
[1] "tbl2"
               cls
clus            [,1] [,2]
  PTH MUTATED      2    1
  PTH WILD-TYPE   91   78
        clus
vv       PTH MUTATED PTH WILD-TYPE
  FEMALE           2            91
  MALE             1            78
D207V4, continuous
D207V5, multiclass
D207V6, multiclass
    clus
vv   PTH MUTATED PTH WILD-TYPE
  T1           0            41
  T2           2           106
  T3           0            14
  T4           1             7
D207V7, multiclass
[1] "Remove cluster labels:" "PTH MUTATED"           
clus
  PTH MUTATED PTH WILD-TYPE 
            2           165 
   TCGA-05-4244    TCGA-05-4249    TCGA-05-4250    TCGA-05-4382    TCGA-05-4384 
"PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" 
   TCGA-05-4389    TCGA-05-4390    TCGA-05-4395    TCGA-05-4396    TCGA-05-4397 
"PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" 
   TCGA-05-4398    TCGA-05-4403    TCGA-05-4405    TCGA-05-4410    TCGA-05-4417 
"PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" 
   TCGA-05-4418    TCGA-05-4420    TCGA-05-4422    TCGA-05-4424    TCGA-05-4425 
"PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" 
   TCGA-05-4426    TCGA-05-4427    TCGA-05-4430    TCGA-05-4432    TCGA-05-4433 
"PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" 
   TCGA-05-4434    TCGA-05-5420    TCGA-05-5423    TCGA-05-5425    TCGA-05-5428 
"PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" 
   TCGA-05-5429    TCGA-05-5715    TCGA-35-3615    TCGA-35-4122    TCGA-35-4123 
"PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" 
   TCGA-35-5375    TCGA-38-4625    TCGA-38-4626    TCGA-38-4627    TCGA-38-4628 
"PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" 
   TCGA-38-4629    TCGA-38-4630    TCGA-38-4631    TCGA-38-4632    TCGA-38-6178 
"PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" 
   TCGA-44-2655    TCGA-44-2656    TCGA-44-2659    TCGA-44-2661    TCGA-44-2662 
"PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" 
   TCGA-44-2665    TCGA-44-2666    TCGA-44-2668    TCGA-44-3396    TCGA-44-3398 
"PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" 
   TCGA-44-3918    TCGA-44-3919    TCGA-44-4112    TCGA-44-5643    TCGA-44-6144 
"PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" 
   TCGA-44-6145    TCGA-44-6146    TCGA-44-6148    TCGA-44-6774    TCGA-44-6775 
"PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" 
   TCGA-44-6776    TCGA-44-6778    TCGA-44-6779    TCGA-49-4486    TCGA-49-4487 
"PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" 
   TCGA-49-4488    TCGA-49-4490    TCGA-49-4494    TCGA-49-4501    TCGA-49-4506 
"PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" 
   TCGA-49-4507    TCGA-49-4510    TCGA-49-4512    TCGA-49-4514    TCGA-49-6742 
"PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" 
   TCGA-49-6743    TCGA-49-6744    TCGA-49-6745    TCGA-49-6767    TCGA-50-5044 
"PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" 
   TCGA-50-5045    TCGA-50-5049    TCGA-50-5051    TCGA-50-5055    TCGA-50-5066 
"PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" 
   TCGA-50-5068    TCGA-50-5072    TCGA-50-5930    TCGA-50-5931    TCGA-50-5932 
"PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" 
   TCGA-50-5933    TCGA-50-5935    TCGA-50-5936    TCGA-50-5939    TCGA-50-5941 
"PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" 
   TCGA-50-5942    TCGA-50-5944    TCGA-50-5946    TCGA-50-6590    TCGA-50-6591 
"PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" 
   TCGA-50-6592    TCGA-50-6593    TCGA-50-6594    TCGA-50-6595    TCGA-50-6597 
"PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" 
   TCGA-55-1592    TCGA-55-1594    TCGA-55-1595    TCGA-55-1596    TCGA-55-5899 
"PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" 
   TCGA-55-6543    TCGA-55-6642    TCGA-55-6712    TCGA-64-1676    TCGA-64-1677 
"PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" 
   TCGA-64-1678    TCGA-64-1680    TCGA-64-5774    TCGA-64-5775    TCGA-64-5778 
"PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" 
   TCGA-64-5779    TCGA-64-5781    TCGA-64-5815    TCGA-67-3770    TCGA-67-3771 
"PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" 
   TCGA-67-3772    TCGA-67-3773    TCGA-67-3774    TCGA-67-4679    TCGA-67-6215 
"PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" 
   TCGA-67-6216    TCGA-67-6217    TCGA-71-6725    TCGA-73-4658    TCGA-73-4659 
"PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" 
   TCGA-73-4662    TCGA-73-4666    TCGA-73-4668    TCGA-73-4670    TCGA-73-4675 
"PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" 
   TCGA-73-4676    TCGA-73-4677    TCGA-75-5122    TCGA-75-5125    TCGA-75-5126 
"PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" 
   TCGA-75-5146    TCGA-75-5147    TCGA-75-6203    TCGA-75-6205    TCGA-75-6206 
"PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" 
   TCGA-75-6207    TCGA-75-6211    TCGA-75-6212    TCGA-80-5611    TCGA-86-6562 
"PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" 
   TCGA-91-6828    TCGA-91-6829    TCGA-91-6831    TCGA-91-6835    TCGA-91-6836 
"PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" 
D207V8, multiclass
    clus
vv   PTH MUTATED PTH WILD-TYPE
  M0           3           134
  M1           0             9
  MX           0            22
D207V9, multiclass
     clus
vv    PTH MUTATED PTH WILD-TYPE
  I             1            87
  II            1            32
  III           1            38
  IV            0             9
D207V10, binary
[1] "tbl2"
               cls
clus            [,1] [,2]
  PTH MUTATED      0    3
  PTH WILD-TYPE   16  153
     clus
vv    PTH MUTATED PTH WILD-TYPE
  NO            0            16
  YES           3           153
D207V11, continuous
D207V12, continuous
D207V13, multiclass
                                             clus
vv                                            PTH MUTATED PTH WILD-TYPE
  CURRENT REFORMED SMOKER FOR < OR = 15 YEARS           3            59
  CURRENT REFORMED SMOKER FOR > 15 YEARS                0            46
  CURRENT SMOKER                                        0            28
  LIFELONG NON-SMOKER                                   0            24
D207V14, continuous

Clustering(208) Variable = PLD5 MUTATION ANALYSIS
D208V1, survival
                sevent
clus2             0  1
  PLD5 MUTATED    4  3
  PLD5 WILD-TYPE 95 47
  PLD5 MUTATED PLD5 WILD-TYPE 
             7            142 
  PLD5 MUTATED PLD5 WILD-TYPE 
             3             47 
$`PLD5 MUTATED`
TCGA-05-4396 TCGA-05-4424 TCGA-44-2662 TCGA-49-4506 TCGA-50-5045 TCGA-50-5049 
        9.96        30.02        15.78        32.84        71.47        48.82 
TCGA-50-5941 
        9.37 

$`PLD5 WILD-TYPE`
TCGA-05-4249 TCGA-05-4250 TCGA-05-4382 TCGA-05-4384 TCGA-05-4390 TCGA-05-4397 
       38.07         3.98        19.92        14.01        37.02        24.03 
TCGA-05-4398 TCGA-05-4402 TCGA-05-4405 TCGA-05-4415 TCGA-05-4417 TCGA-05-4418 
       47.05         8.02        20.05         2.96        14.93         8.98 
TCGA-05-4420 TCGA-05-4426 TCGA-05-4427 TCGA-05-4430 TCGA-05-4432 TCGA-05-4433 
       29.95        26.01        26.01        25.02        25.02        24.00 
TCGA-05-4434 TCGA-05-5420 TCGA-05-5423 TCGA-05-5425 TCGA-05-5429 TCGA-05-5715 
       15.02         1.02         4.96         2.96         0.99         2.04 
TCGA-35-3615 TCGA-35-4122 TCGA-35-4123 TCGA-35-5375 TCGA-38-4625 TCGA-38-4626 
        0.46         7.36         5.95         8.68        47.61        85.32 
TCGA-38-4627 TCGA-38-4628 TCGA-38-4629 TCGA-38-4630 TCGA-38-4631 TCGA-38-4632 
       37.71        49.02        28.37        35.28        11.64        44.61 
TCGA-38-6178 TCGA-44-2655 TCGA-44-2656 TCGA-44-2657 TCGA-44-2659 TCGA-44-2661 
        5.19        18.87        19.10        13.15        17.39         3.39 
TCGA-44-2665 TCGA-44-2666 TCGA-44-2668 TCGA-44-3396 TCGA-44-3398 TCGA-44-3918 
       13.15         3.19         8.09        10.22         8.32         6.44 
TCGA-44-3919 TCGA-44-4112 TCGA-44-5643 TCGA-44-5645 TCGA-44-6144 TCGA-44-6145 
        6.21         4.60         3.48         6.84         0.30         3.35 
TCGA-44-6146 TCGA-44-6147 TCGA-44-6148 TCGA-44-6774 TCGA-44-6775 TCGA-44-6776 
        9.93         7.76         3.12         5.42         2.70        63.72 
TCGA-44-6777 TCGA-44-6778 TCGA-44-6779 TCGA-49-4486 TCGA-49-4487 TCGA-49-4488 
       32.45        36.49        16.41        76.21        28.11        28.57 
TCGA-49-4490 TCGA-49-4494 TCGA-49-4501 TCGA-49-4505 TCGA-49-4507 TCGA-49-4510 
       12.66        35.54        46.72        14.07         8.81        29.46 
TCGA-49-4512 TCGA-49-4514 TCGA-49-6742 TCGA-49-6743 TCGA-49-6744 TCGA-49-6745 
       29.75        43.20        15.02        12.13        12.99         4.93 
TCGA-50-5044 TCGA-50-5051 TCGA-50-5055 TCGA-50-5066 TCGA-50-5068 TCGA-50-5072 
       20.48        14.96        25.81         9.76        49.28         8.05 
TCGA-50-5930 TCGA-50-5931 TCGA-50-5932 TCGA-50-5933 TCGA-50-5935 TCGA-50-5936 
        9.27         8.78        35.87        77.88        21.47         8.45 
TCGA-50-5939 TCGA-50-5942 TCGA-50-5944 TCGA-50-5946 TCGA-50-6590 TCGA-50-6591 
       15.12         4.44        12.26        11.47        42.31         3.88 
TCGA-50-6592 TCGA-50-6593 TCGA-50-6594 TCGA-50-6595 TCGA-50-6597 TCGA-55-1592 
       25.51        11.05        12.16         6.21        33.37        23.05 
TCGA-55-1594 TCGA-55-1595 TCGA-55-1596 TCGA-55-5899 TCGA-55-6543 TCGA-55-6642 
       38.73        48.62        45.17         2.86         0.07        32.61 
TCGA-55-6712 TCGA-64-1676 TCGA-64-1677 TCGA-64-1678 TCGA-64-1680 TCGA-64-5774 
        0.79        56.81        20.65        39.09        37.02        83.84 
TCGA-64-5775 TCGA-64-5778 TCGA-64-5779 TCGA-64-5781 TCGA-64-5815 TCGA-67-3770 
        0.10        30.44        16.67        39.52         7.33         0.99 
TCGA-67-3771 TCGA-67-3772 TCGA-67-3773 TCGA-67-3774 TCGA-67-6215 TCGA-67-6216 
        1.97         0.59         2.04         0.59         0.89         0.69 
TCGA-67-6217 TCGA-71-6725 TCGA-73-4658 TCGA-73-4659 TCGA-73-4662 TCGA-73-4666 
       13.87         2.01        52.57        23.38        29.95        20.28 
TCGA-73-4668 TCGA-73-4670 TCGA-73-4675 TCGA-73-4676 TCGA-73-4677 TCGA-91-6828 
       15.35         0.46         1.32         4.01         1.25         1.22 
TCGA-91-6829 TCGA-91-6831 TCGA-91-6835 TCGA-91-6836 
       41.33         1.28         1.15         0.36 

  PLD5 MUTATED PLD5 WILD-TYPE 
          9.37           0.07 
  PLD5 MUTATED PLD5 WILD-TYPE 
         71.47          85.32 
  PLD5 MUTATED PLD5 WILD-TYPE 
         30.02          13.15 
[1] "9.4 - 71.5 (30.0)" "0.1 - 85.3 (13.2)"
    TCGA-05-4249     TCGA-05-4250     TCGA-05-4382     TCGA-05-4384 
"PLD5 WILD-TYPE" "PLD5 WILD-TYPE" "PLD5 WILD-TYPE" "PLD5 WILD-TYPE" 
    TCGA-05-4390     TCGA-05-4396     TCGA-05-4397     TCGA-05-4398 
"PLD5 WILD-TYPE"   "PLD5 MUTATED" "PLD5 WILD-TYPE" "PLD5 WILD-TYPE" 
    TCGA-05-4402     TCGA-05-4405     TCGA-05-4415     TCGA-05-4417 
"PLD5 WILD-TYPE" "PLD5 WILD-TYPE" "PLD5 WILD-TYPE" "PLD5 WILD-TYPE" 
    TCGA-05-4418     TCGA-05-4420     TCGA-05-4424     TCGA-05-4426 
"PLD5 WILD-TYPE" "PLD5 WILD-TYPE"   "PLD5 MUTATED" "PLD5 WILD-TYPE" 
    TCGA-05-4427     TCGA-05-4430     TCGA-05-4432     TCGA-05-4433 
"PLD5 WILD-TYPE" "PLD5 WILD-TYPE" "PLD5 WILD-TYPE" "PLD5 WILD-TYPE" 
    TCGA-05-4434     TCGA-05-5420     TCGA-05-5423     TCGA-05-5425 
"PLD5 WILD-TYPE" "PLD5 WILD-TYPE" "PLD5 WILD-TYPE" "PLD5 WILD-TYPE" 
    TCGA-05-5429     TCGA-05-5715     TCGA-35-3615     TCGA-35-4122 
"PLD5 WILD-TYPE" "PLD5 WILD-TYPE" "PLD5 WILD-TYPE" "PLD5 WILD-TYPE" 
    TCGA-35-4123     TCGA-35-5375     TCGA-38-4625     TCGA-38-4626 
"PLD5 WILD-TYPE" "PLD5 WILD-TYPE" "PLD5 WILD-TYPE" "PLD5 WILD-TYPE" 
    TCGA-38-4627     TCGA-38-4628     TCGA-38-4629     TCGA-38-4630 
"PLD5 WILD-TYPE" "PLD5 WILD-TYPE" "PLD5 WILD-TYPE" "PLD5 WILD-TYPE" 
    TCGA-38-4631     TCGA-38-4632     TCGA-38-6178     TCGA-44-2655 
"PLD5 WILD-TYPE" "PLD5 WILD-TYPE" "PLD5 WILD-TYPE" "PLD5 WILD-TYPE" 
    TCGA-44-2656     TCGA-44-2657     TCGA-44-2659     TCGA-44-2661 
"PLD5 WILD-TYPE" "PLD5 WILD-TYPE" "PLD5 WILD-TYPE" "PLD5 WILD-TYPE" 
    TCGA-44-2662     TCGA-44-2665     TCGA-44-2666     TCGA-44-2668 
  "PLD5 MUTATED" "PLD5 WILD-TYPE" "PLD5 WILD-TYPE" "PLD5 WILD-TYPE" 
    TCGA-44-3396     TCGA-44-3398     TCGA-44-3918     TCGA-44-3919 
"PLD5 WILD-TYPE" "PLD5 WILD-TYPE" "PLD5 WILD-TYPE" "PLD5 WILD-TYPE" 
    TCGA-44-4112     TCGA-44-5643     TCGA-44-5645     TCGA-44-6144 
"PLD5 WILD-TYPE" "PLD5 WILD-TYPE" "PLD5 WILD-TYPE" "PLD5 WILD-TYPE" 
    TCGA-44-6145     TCGA-44-6146     TCGA-44-6147     TCGA-44-6148 
"PLD5 WILD-TYPE" "PLD5 WILD-TYPE" "PLD5 WILD-TYPE" "PLD5 WILD-TYPE" 
    TCGA-44-6774     TCGA-44-6775     TCGA-44-6776     TCGA-44-6777 
"PLD5 WILD-TYPE" "PLD5 WILD-TYPE" "PLD5 WILD-TYPE" "PLD5 WILD-TYPE" 
    TCGA-44-6778     TCGA-44-6779     TCGA-49-4486     TCGA-49-4487 
"PLD5 WILD-TYPE" "PLD5 WILD-TYPE" "PLD5 WILD-TYPE" "PLD5 WILD-TYPE" 
    TCGA-49-4488     TCGA-49-4490     TCGA-49-4494     TCGA-49-4501 
"PLD5 WILD-TYPE" "PLD5 WILD-TYPE" "PLD5 WILD-TYPE" "PLD5 WILD-TYPE" 
    TCGA-49-4505     TCGA-49-4506     TCGA-49-4507     TCGA-49-4510 
"PLD5 WILD-TYPE"   "PLD5 MUTATED" "PLD5 WILD-TYPE" "PLD5 WILD-TYPE" 
    TCGA-49-4512     TCGA-49-4514     TCGA-49-6742     TCGA-49-6743 
"PLD5 WILD-TYPE" "PLD5 WILD-TYPE" "PLD5 WILD-TYPE" "PLD5 WILD-TYPE" 
    TCGA-49-6744     TCGA-49-6745     TCGA-50-5044     TCGA-50-5045 
"PLD5 WILD-TYPE" "PLD5 WILD-TYPE" "PLD5 WILD-TYPE"   "PLD5 MUTATED" 
    TCGA-50-5049     TCGA-50-5051     TCGA-50-5055     TCGA-50-5066 
  "PLD5 MUTATED" "PLD5 WILD-TYPE" "PLD5 WILD-TYPE" "PLD5 WILD-TYPE" 
    TCGA-50-5068     TCGA-50-5072     TCGA-50-5930     TCGA-50-5931 
"PLD5 WILD-TYPE" "PLD5 WILD-TYPE" "PLD5 WILD-TYPE" "PLD5 WILD-TYPE" 
    TCGA-50-5932     TCGA-50-5933     TCGA-50-5935     TCGA-50-5936 
"PLD5 WILD-TYPE" "PLD5 WILD-TYPE" "PLD5 WILD-TYPE" "PLD5 WILD-TYPE" 
    TCGA-50-5939     TCGA-50-5941     TCGA-50-5942     TCGA-50-5944 
"PLD5 WILD-TYPE"   "PLD5 MUTATED" "PLD5 WILD-TYPE" "PLD5 WILD-TYPE" 
    TCGA-50-5946     TCGA-50-6590     TCGA-50-6591     TCGA-50-6592 
"PLD5 WILD-TYPE" "PLD5 WILD-TYPE" "PLD5 WILD-TYPE" "PLD5 WILD-TYPE" 
    TCGA-50-6593     TCGA-50-6594     TCGA-50-6595     TCGA-50-6597 
"PLD5 WILD-TYPE" "PLD5 WILD-TYPE" "PLD5 WILD-TYPE" "PLD5 WILD-TYPE" 
    TCGA-55-1592     TCGA-55-1594     TCGA-55-1595     TCGA-55-1596 
"PLD5 WILD-TYPE" "PLD5 WILD-TYPE" "PLD5 WILD-TYPE" "PLD5 WILD-TYPE" 
    TCGA-55-5899     TCGA-55-6543     TCGA-55-6642     TCGA-55-6712 
"PLD5 WILD-TYPE" "PLD5 WILD-TYPE" "PLD5 WILD-TYPE" "PLD5 WILD-TYPE" 
    TCGA-64-1676     TCGA-64-1677     TCGA-64-1678     TCGA-64-1680 
"PLD5 WILD-TYPE" "PLD5 WILD-TYPE" "PLD5 WILD-TYPE" "PLD5 WILD-TYPE" 
    TCGA-64-5774     TCGA-64-5775     TCGA-64-5778     TCGA-64-5779 
"PLD5 WILD-TYPE" "PLD5 WILD-TYPE" "PLD5 WILD-TYPE" "PLD5 WILD-TYPE" 
    TCGA-64-5781     TCGA-64-5815     TCGA-67-3770     TCGA-67-3771 
"PLD5 WILD-TYPE" "PLD5 WILD-TYPE" "PLD5 WILD-TYPE" "PLD5 WILD-TYPE" 
    TCGA-67-3772     TCGA-67-3773     TCGA-67-3774     TCGA-67-6215 
"PLD5 WILD-TYPE" "PLD5 WILD-TYPE" "PLD5 WILD-TYPE" "PLD5 WILD-TYPE" 
    TCGA-67-6216     TCGA-67-6217     TCGA-71-6725     TCGA-73-4658 
"PLD5 WILD-TYPE" "PLD5 WILD-TYPE" "PLD5 WILD-TYPE" "PLD5 WILD-TYPE" 
    TCGA-73-4659     TCGA-73-4662     TCGA-73-4666     TCGA-73-4668 
"PLD5 WILD-TYPE" "PLD5 WILD-TYPE" "PLD5 WILD-TYPE" "PLD5 WILD-TYPE" 
    TCGA-73-4670     TCGA-73-4675     TCGA-73-4676     TCGA-73-4677 
"PLD5 WILD-TYPE" "PLD5 WILD-TYPE" "PLD5 WILD-TYPE" "PLD5 WILD-TYPE" 
    TCGA-91-6828     TCGA-91-6829     TCGA-91-6831     TCGA-91-6835 
"PLD5 WILD-TYPE" "PLD5 WILD-TYPE" "PLD5 WILD-TYPE" "PLD5 WILD-TYPE" 
    TCGA-91-6836 
"PLD5 WILD-TYPE" 
    TCGA-05-4249     TCGA-05-4250     TCGA-05-4382     TCGA-05-4384 
"PLD5 WILD-TYPE" "PLD5 WILD-TYPE" "PLD5 WILD-TYPE" "PLD5 WILD-TYPE" 
    TCGA-05-4390     TCGA-05-4396     TCGA-05-4397     TCGA-05-4398 
"PLD5 WILD-TYPE"   "PLD5 MUTATED" "PLD5 WILD-TYPE" "PLD5 WILD-TYPE" 
    TCGA-05-4402     TCGA-05-4405     TCGA-05-4415     TCGA-05-4417 
"PLD5 WILD-TYPE" "PLD5 WILD-TYPE" "PLD5 WILD-TYPE" "PLD5 WILD-TYPE" 
    TCGA-05-4418     TCGA-05-4420     TCGA-05-4424     TCGA-05-4426 
"PLD5 WILD-TYPE" "PLD5 WILD-TYPE"   "PLD5 MUTATED" "PLD5 WILD-TYPE" 
    TCGA-05-4427     TCGA-05-4430     TCGA-05-4432     TCGA-05-4433 
"PLD5 WILD-TYPE" "PLD5 WILD-TYPE" "PLD5 WILD-TYPE" "PLD5 WILD-TYPE" 
    TCGA-05-4434     TCGA-05-5420     TCGA-05-5423     TCGA-05-5425 
"PLD5 WILD-TYPE" "PLD5 WILD-TYPE" "PLD5 WILD-TYPE" "PLD5 WILD-TYPE" 
    TCGA-05-5429     TCGA-05-5715     TCGA-35-3615     TCGA-35-4122 
"PLD5 WILD-TYPE" "PLD5 WILD-TYPE" "PLD5 WILD-TYPE" "PLD5 WILD-TYPE" 
    TCGA-35-4123     TCGA-35-5375     TCGA-38-4625     TCGA-38-4626 
"PLD5 WILD-TYPE" "PLD5 WILD-TYPE" "PLD5 WILD-TYPE" "PLD5 WILD-TYPE" 
    TCGA-38-4627     TCGA-38-4628     TCGA-38-4629     TCGA-38-4630 
"PLD5 WILD-TYPE" "PLD5 WILD-TYPE" "PLD5 WILD-TYPE" "PLD5 WILD-TYPE" 
    TCGA-38-4631     TCGA-38-4632     TCGA-38-6178     TCGA-44-2655 
"PLD5 WILD-TYPE" "PLD5 WILD-TYPE" "PLD5 WILD-TYPE" "PLD5 WILD-TYPE" 
    TCGA-44-2656     TCGA-44-2657     TCGA-44-2659     TCGA-44-2661 
"PLD5 WILD-TYPE" "PLD5 WILD-TYPE" "PLD5 WILD-TYPE" "PLD5 WILD-TYPE" 
    TCGA-44-2662     TCGA-44-2665     TCGA-44-2666     TCGA-44-2668 
  "PLD5 MUTATED" "PLD5 WILD-TYPE" "PLD5 WILD-TYPE" "PLD5 WILD-TYPE" 
    TCGA-44-3396     TCGA-44-3398     TCGA-44-3918     TCGA-44-3919 
"PLD5 WILD-TYPE" "PLD5 WILD-TYPE" "PLD5 WILD-TYPE" "PLD5 WILD-TYPE" 
    TCGA-44-4112     TCGA-44-5643     TCGA-44-5645     TCGA-44-6144 
"PLD5 WILD-TYPE" "PLD5 WILD-TYPE" "PLD5 WILD-TYPE" "PLD5 WILD-TYPE" 
    TCGA-44-6145     TCGA-44-6146     TCGA-44-6147     TCGA-44-6148 
"PLD5 WILD-TYPE" "PLD5 WILD-TYPE" "PLD5 WILD-TYPE" "PLD5 WILD-TYPE" 
    TCGA-44-6774     TCGA-44-6775     TCGA-44-6776     TCGA-44-6777 
"PLD5 WILD-TYPE" "PLD5 WILD-TYPE" "PLD5 WILD-TYPE" "PLD5 WILD-TYPE" 
    TCGA-44-6778     TCGA-44-6779     TCGA-49-4486     TCGA-49-4487 
"PLD5 WILD-TYPE" "PLD5 WILD-TYPE" "PLD5 WILD-TYPE" "PLD5 WILD-TYPE" 
    TCGA-49-4488     TCGA-49-4490     TCGA-49-4494     TCGA-49-4501 
"PLD5 WILD-TYPE" "PLD5 WILD-TYPE" "PLD5 WILD-TYPE" "PLD5 WILD-TYPE" 
    TCGA-49-4505     TCGA-49-4506     TCGA-49-4507     TCGA-49-4510 
"PLD5 WILD-TYPE"   "PLD5 MUTATED" "PLD5 WILD-TYPE" "PLD5 WILD-TYPE" 
    TCGA-49-4512     TCGA-49-4514     TCGA-49-6742     TCGA-49-6743 
"PLD5 WILD-TYPE" "PLD5 WILD-TYPE" "PLD5 WILD-TYPE" "PLD5 WILD-TYPE" 
    TCGA-49-6744     TCGA-49-6745     TCGA-50-5044     TCGA-50-5045 
"PLD5 WILD-TYPE" "PLD5 WILD-TYPE" "PLD5 WILD-TYPE"   "PLD5 MUTATED" 
    TCGA-50-5049     TCGA-50-5051     TCGA-50-5055     TCGA-50-5066 
  "PLD5 MUTATED" "PLD5 WILD-TYPE" "PLD5 WILD-TYPE" "PLD5 WILD-TYPE" 
    TCGA-50-5068     TCGA-50-5072     TCGA-50-5930     TCGA-50-5931 
"PLD5 WILD-TYPE" "PLD5 WILD-TYPE" "PLD5 WILD-TYPE" "PLD5 WILD-TYPE" 
    TCGA-50-5932     TCGA-50-5933     TCGA-50-5935     TCGA-50-5936 
"PLD5 WILD-TYPE" "PLD5 WILD-TYPE" "PLD5 WILD-TYPE" "PLD5 WILD-TYPE" 
    TCGA-50-5939     TCGA-50-5941     TCGA-50-5942     TCGA-50-5944 
"PLD5 WILD-TYPE"   "PLD5 MUTATED" "PLD5 WILD-TYPE" "PLD5 WILD-TYPE" 
    TCGA-50-5946     TCGA-50-6590     TCGA-50-6591     TCGA-50-6592 
"PLD5 WILD-TYPE" "PLD5 WILD-TYPE" "PLD5 WILD-TYPE" "PLD5 WILD-TYPE" 
    TCGA-50-6593     TCGA-50-6594     TCGA-50-6595     TCGA-50-6597 
"PLD5 WILD-TYPE" "PLD5 WILD-TYPE" "PLD5 WILD-TYPE" "PLD5 WILD-TYPE" 
    TCGA-55-1592     TCGA-55-1594     TCGA-55-1595     TCGA-55-1596 
"PLD5 WILD-TYPE" "PLD5 WILD-TYPE" "PLD5 WILD-TYPE" "PLD5 WILD-TYPE" 
    TCGA-55-5899     TCGA-55-6543     TCGA-55-6642     TCGA-55-6712 
"PLD5 WILD-TYPE" "PLD5 WILD-TYPE" "PLD5 WILD-TYPE" "PLD5 WILD-TYPE" 
    TCGA-64-1676     TCGA-64-1677     TCGA-64-1678     TCGA-64-1680 
"PLD5 WILD-TYPE" "PLD5 WILD-TYPE" "PLD5 WILD-TYPE" "PLD5 WILD-TYPE" 
    TCGA-64-5774     TCGA-64-5775     TCGA-64-5778     TCGA-64-5779 
"PLD5 WILD-TYPE" "PLD5 WILD-TYPE" "PLD5 WILD-TYPE" "PLD5 WILD-TYPE" 
    TCGA-64-5781     TCGA-64-5815     TCGA-67-3770     TCGA-67-3771 
"PLD5 WILD-TYPE" "PLD5 WILD-TYPE" "PLD5 WILD-TYPE" "PLD5 WILD-TYPE" 
    TCGA-67-3772     TCGA-67-3773     TCGA-67-3774     TCGA-67-6215 
"PLD5 WILD-TYPE" "PLD5 WILD-TYPE" "PLD5 WILD-TYPE" "PLD5 WILD-TYPE" 
    TCGA-67-6216     TCGA-67-6217     TCGA-71-6725     TCGA-73-4658 
"PLD5 WILD-TYPE" "PLD5 WILD-TYPE" "PLD5 WILD-TYPE" "PLD5 WILD-TYPE" 
    TCGA-73-4659     TCGA-73-4662     TCGA-73-4666     TCGA-73-4668 
"PLD5 WILD-TYPE" "PLD5 WILD-TYPE" "PLD5 WILD-TYPE" "PLD5 WILD-TYPE" 
    TCGA-73-4670     TCGA-73-4675     TCGA-73-4676     TCGA-73-4677 
"PLD5 WILD-TYPE" "PLD5 WILD-TYPE" "PLD5 WILD-TYPE" "PLD5 WILD-TYPE" 
    TCGA-91-6828     TCGA-91-6829     TCGA-91-6831     TCGA-91-6835 
"PLD5 WILD-TYPE" "PLD5 WILD-TYPE" "PLD5 WILD-TYPE" "PLD5 WILD-TYPE" 
    TCGA-91-6836 
"PLD5 WILD-TYPE" 
    TCGA-05-4249     TCGA-05-4250     TCGA-05-4382     TCGA-05-4384 
"PLD5 WILD-TYPE" "PLD5 WILD-TYPE" "PLD5 WILD-TYPE" "PLD5 WILD-TYPE" 
    TCGA-05-4390     TCGA-05-4396     TCGA-05-4397     TCGA-05-4398 
"PLD5 WILD-TYPE"   "PLD5 MUTATED" "PLD5 WILD-TYPE" "PLD5 WILD-TYPE" 
    TCGA-05-4402     TCGA-05-4405     TCGA-05-4415     TCGA-05-4417 
"PLD5 WILD-TYPE" "PLD5 WILD-TYPE" "PLD5 WILD-TYPE" "PLD5 WILD-TYPE" 
    TCGA-05-4418     TCGA-05-4420     TCGA-05-4424     TCGA-05-4426 
"PLD5 WILD-TYPE" "PLD5 WILD-TYPE"   "PLD5 MUTATED" "PLD5 WILD-TYPE" 
    TCGA-05-4427     TCGA-05-4430     TCGA-05-4432     TCGA-05-4433 
"PLD5 WILD-TYPE" "PLD5 WILD-TYPE" "PLD5 WILD-TYPE" "PLD5 WILD-TYPE" 
    TCGA-05-4434     TCGA-05-5420     TCGA-05-5423     TCGA-05-5425 
"PLD5 WILD-TYPE" "PLD5 WILD-TYPE" "PLD5 WILD-TYPE" "PLD5 WILD-TYPE" 
    TCGA-05-5429     TCGA-05-5715     TCGA-35-3615     TCGA-35-4122 
"PLD5 WILD-TYPE" "PLD5 WILD-TYPE" "PLD5 WILD-TYPE" "PLD5 WILD-TYPE" 
    TCGA-35-4123     TCGA-35-5375     TCGA-38-4625     TCGA-38-4626 
"PLD5 WILD-TYPE" "PLD5 WILD-TYPE" "PLD5 WILD-TYPE" "PLD5 WILD-TYPE" 
    TCGA-38-4627     TCGA-38-4628     TCGA-38-4629     TCGA-38-4630 
"PLD5 WILD-TYPE" "PLD5 WILD-TYPE" "PLD5 WILD-TYPE" "PLD5 WILD-TYPE" 
    TCGA-38-4631     TCGA-38-4632     TCGA-38-6178     TCGA-44-2655 
"PLD5 WILD-TYPE" "PLD5 WILD-TYPE" "PLD5 WILD-TYPE" "PLD5 WILD-TYPE" 
    TCGA-44-2656     TCGA-44-2657     TCGA-44-2659     TCGA-44-2661 
"PLD5 WILD-TYPE" "PLD5 WILD-TYPE" "PLD5 WILD-TYPE" "PLD5 WILD-TYPE" 
    TCGA-44-2662     TCGA-44-2665     TCGA-44-2666     TCGA-44-2668 
  "PLD5 MUTATED" "PLD5 WILD-TYPE" "PLD5 WILD-TYPE" "PLD5 WILD-TYPE" 
    TCGA-44-3396     TCGA-44-3398     TCGA-44-3918     TCGA-44-3919 
"PLD5 WILD-TYPE" "PLD5 WILD-TYPE" "PLD5 WILD-TYPE" "PLD5 WILD-TYPE" 
    TCGA-44-4112     TCGA-44-5643     TCGA-44-5645     TCGA-44-6144 
"PLD5 WILD-TYPE" "PLD5 WILD-TYPE" "PLD5 WILD-TYPE" "PLD5 WILD-TYPE" 
    TCGA-44-6145     TCGA-44-6146     TCGA-44-6147     TCGA-44-6148 
"PLD5 WILD-TYPE" "PLD5 WILD-TYPE" "PLD5 WILD-TYPE" "PLD5 WILD-TYPE" 
    TCGA-44-6774     TCGA-44-6775     TCGA-44-6776     TCGA-44-6777 
"PLD5 WILD-TYPE" "PLD5 WILD-TYPE" "PLD5 WILD-TYPE" "PLD5 WILD-TYPE" 
    TCGA-44-6778     TCGA-44-6779     TCGA-49-4486     TCGA-49-4487 
"PLD5 WILD-TYPE" "PLD5 WILD-TYPE" "PLD5 WILD-TYPE" "PLD5 WILD-TYPE" 
    TCGA-49-4488     TCGA-49-4490     TCGA-49-4494     TCGA-49-4501 
"PLD5 WILD-TYPE" "PLD5 WILD-TYPE" "PLD5 WILD-TYPE" "PLD5 WILD-TYPE" 
    TCGA-49-4505     TCGA-49-4506     TCGA-49-4507     TCGA-49-4510 
"PLD5 WILD-TYPE"   "PLD5 MUTATED" "PLD5 WILD-TYPE" "PLD5 WILD-TYPE" 
    TCGA-49-4512     TCGA-49-4514     TCGA-49-6742     TCGA-49-6743 
"PLD5 WILD-TYPE" "PLD5 WILD-TYPE" "PLD5 WILD-TYPE" "PLD5 WILD-TYPE" 
    TCGA-49-6744     TCGA-49-6745     TCGA-50-5044     TCGA-50-5045 
"PLD5 WILD-TYPE" "PLD5 WILD-TYPE" "PLD5 WILD-TYPE"   "PLD5 MUTATED" 
    TCGA-50-5049     TCGA-50-5051     TCGA-50-5055     TCGA-50-5066 
  "PLD5 MUTATED" "PLD5 WILD-TYPE" "PLD5 WILD-TYPE" "PLD5 WILD-TYPE" 
    TCGA-50-5068     TCGA-50-5072     TCGA-50-5930     TCGA-50-5931 
"PLD5 WILD-TYPE" "PLD5 WILD-TYPE" "PLD5 WILD-TYPE" "PLD5 WILD-TYPE" 
    TCGA-50-5932     TCGA-50-5933     TCGA-50-5935     TCGA-50-5936 
"PLD5 WILD-TYPE" "PLD5 WILD-TYPE" "PLD5 WILD-TYPE" "PLD5 WILD-TYPE" 
    TCGA-50-5939     TCGA-50-5941     TCGA-50-5942     TCGA-50-5944 
"PLD5 WILD-TYPE"   "PLD5 MUTATED" "PLD5 WILD-TYPE" "PLD5 WILD-TYPE" 
    TCGA-50-5946     TCGA-50-6590     TCGA-50-6591     TCGA-50-6592 
"PLD5 WILD-TYPE" "PLD5 WILD-TYPE" "PLD5 WILD-TYPE" "PLD5 WILD-TYPE" 
    TCGA-50-6593     TCGA-50-6594     TCGA-50-6595     TCGA-50-6597 
"PLD5 WILD-TYPE" "PLD5 WILD-TYPE" "PLD5 WILD-TYPE" "PLD5 WILD-TYPE" 
    TCGA-55-1592     TCGA-55-1594     TCGA-55-1595     TCGA-55-1596 
"PLD5 WILD-TYPE" "PLD5 WILD-TYPE" "PLD5 WILD-TYPE" "PLD5 WILD-TYPE" 
    TCGA-55-5899     TCGA-55-6543     TCGA-55-6642     TCGA-55-6712 
"PLD5 WILD-TYPE" "PLD5 WILD-TYPE" "PLD5 WILD-TYPE" "PLD5 WILD-TYPE" 
    TCGA-64-1676     TCGA-64-1677     TCGA-64-1678     TCGA-64-1680 
"PLD5 WILD-TYPE" "PLD5 WILD-TYPE" "PLD5 WILD-TYPE" "PLD5 WILD-TYPE" 
    TCGA-64-5774     TCGA-64-5775     TCGA-64-5778     TCGA-64-5779 
"PLD5 WILD-TYPE" "PLD5 WILD-TYPE" "PLD5 WILD-TYPE" "PLD5 WILD-TYPE" 
    TCGA-64-5781     TCGA-64-5815     TCGA-67-3770     TCGA-67-3771 
"PLD5 WILD-TYPE" "PLD5 WILD-TYPE" "PLD5 WILD-TYPE" "PLD5 WILD-TYPE" 
    TCGA-67-3772     TCGA-67-3773     TCGA-67-3774     TCGA-67-6215 
"PLD5 WILD-TYPE" "PLD5 WILD-TYPE" "PLD5 WILD-TYPE" "PLD5 WILD-TYPE" 
    TCGA-67-6216     TCGA-67-6217     TCGA-71-6725     TCGA-73-4658 
"PLD5 WILD-TYPE" "PLD5 WILD-TYPE" "PLD5 WILD-TYPE" "PLD5 WILD-TYPE" 
    TCGA-73-4659     TCGA-73-4662     TCGA-73-4666     TCGA-73-4668 
"PLD5 WILD-TYPE" "PLD5 WILD-TYPE" "PLD5 WILD-TYPE" "PLD5 WILD-TYPE" 
    TCGA-73-4670     TCGA-73-4675     TCGA-73-4676     TCGA-73-4677 
"PLD5 WILD-TYPE" "PLD5 WILD-TYPE" "PLD5 WILD-TYPE" "PLD5 WILD-TYPE" 
    TCGA-91-6828     TCGA-91-6829     TCGA-91-6831     TCGA-91-6835 
"PLD5 WILD-TYPE" "PLD5 WILD-TYPE" "PLD5 WILD-TYPE" "PLD5 WILD-TYPE" 
    TCGA-91-6836 
"PLD5 WILD-TYPE" 
[1] "hr=" "1.3"
D208V2, continuous
D208V3, binary
[1] "tbl2"
                cls
clus             [,1] [,2]
  PLD5 MUTATED      3    5
  PLD5 WILD-TYPE   90   74
        clus
vv       PLD5 MUTATED PLD5 WILD-TYPE
  FEMALE            3             90
  MALE              5             74
D208V4, continuous
D208V5, multiclass
D208V6, multiclass
    clus
vv   PLD5 MUTATED PLD5 WILD-TYPE
  T1            0             41
  T2            6            102
  T3            1             13
  T4            1              7
D208V7, multiclass
       clus
vv      PLD5 MUTATED PLD5 WILD-TYPE
  N0               4             91
  N1               3             34
  N2+N3            1             34
D208V8, multiclass
    clus
vv   PLD5 MUTATED PLD5 WILD-TYPE
  M0            8            129
  M1            0              9
  MX            0             22
D208V9, multiclass
     clus
vv    PLD5 MUTATED PLD5 WILD-TYPE
  I              4             84
  II             2             31
  III            2             37
  IV             0              9
D208V10, binary
[1] "tbl2"
                cls
clus             [,1] [,2]
  PLD5 MUTATED      2    6
  PLD5 WILD-TYPE   14  150
     clus
vv    PLD5 MUTATED PLD5 WILD-TYPE
  NO             2             14
  YES            6            150
D208V11, continuous
D208V12, continuous
D208V13, multiclass
                                             clus
vv                                            PLD5 MUTATED PLD5 WILD-TYPE
  CURRENT REFORMED SMOKER FOR < OR = 15 YEARS            1             61
  CURRENT REFORMED SMOKER FOR > 15 YEARS                 3             43
  CURRENT SMOKER                                         2             26
  LIFELONG NON-SMOKER                                    0             24
D208V14, continuous

Clustering(209) Variable = PCDH11X MUTATION ANALYSIS
D209V1, survival
                   sevent
clus2                0  1
  PCDH11X MUTATED   13 10
  PCDH11X WILD-TYPE 86 40
  PCDH11X MUTATED PCDH11X WILD-TYPE 
               23               126 
  PCDH11X MUTATED PCDH11X WILD-TYPE 
               10                40 
$`PCDH11X MUTATED`
TCGA-05-4382 TCGA-05-4396 TCGA-05-4397 TCGA-05-4405 TCGA-05-4424 TCGA-05-4427 
       19.92         9.96        24.03        20.05        30.02        26.01 
TCGA-38-4631 TCGA-44-2655 TCGA-44-2657 TCGA-44-2668 TCGA-44-3918 TCGA-44-5643 
       11.64        18.87        13.15         8.09         6.44         3.48 
TCGA-44-6147 TCGA-49-4487 TCGA-49-4505 TCGA-50-5933 TCGA-50-6590 TCGA-50-6591 
        7.76        28.11        14.07        77.88        42.31         3.88 
TCGA-50-6592 TCGA-50-6594 TCGA-64-1676 TCGA-64-5778 TCGA-73-4670 
       25.51        12.16        56.81        30.44         0.46 

$`PCDH11X WILD-TYPE`
TCGA-05-4249 TCGA-05-4250 TCGA-05-4384 TCGA-05-4390 TCGA-05-4398 TCGA-05-4402 
       38.07         3.98        14.01        37.02        47.05         8.02 
TCGA-05-4415 TCGA-05-4417 TCGA-05-4418 TCGA-05-4420 TCGA-05-4426 TCGA-05-4430 
        2.96        14.93         8.98        29.95        26.01        25.02 
TCGA-05-4432 TCGA-05-4433 TCGA-05-4434 TCGA-05-5420 TCGA-05-5423 TCGA-05-5425 
       25.02        24.00        15.02         1.02         4.96         2.96 
TCGA-05-5429 TCGA-05-5715 TCGA-35-3615 TCGA-35-4122 TCGA-35-4123 TCGA-35-5375 
        0.99         2.04         0.46         7.36         5.95         8.68 
TCGA-38-4625 TCGA-38-4626 TCGA-38-4627 TCGA-38-4628 TCGA-38-4629 TCGA-38-4630 
       47.61        85.32        37.71        49.02        28.37        35.28 
TCGA-38-4632 TCGA-38-6178 TCGA-44-2656 TCGA-44-2659 TCGA-44-2661 TCGA-44-2662 
       44.61         5.19        19.10        17.39         3.39        15.78 
TCGA-44-2665 TCGA-44-2666 TCGA-44-3396 TCGA-44-3398 TCGA-44-3919 TCGA-44-4112 
       13.15         3.19        10.22         8.32         6.21         4.60 
TCGA-44-5645 TCGA-44-6144 TCGA-44-6145 TCGA-44-6146 TCGA-44-6148 TCGA-44-6774 
        6.84         0.30         3.35         9.93         3.12         5.42 
TCGA-44-6775 TCGA-44-6776 TCGA-44-6777 TCGA-44-6778 TCGA-44-6779 TCGA-49-4486 
        2.70        63.72        32.45        36.49        16.41        76.21 
TCGA-49-4488 TCGA-49-4490 TCGA-49-4494 TCGA-49-4501 TCGA-49-4506 TCGA-49-4507 
       28.57        12.66        35.54        46.72        32.84         8.81 
TCGA-49-4510 TCGA-49-4512 TCGA-49-4514 TCGA-49-6742 TCGA-49-6743 TCGA-49-6744 
       29.46        29.75        43.20        15.02        12.13        12.99 
TCGA-49-6745 TCGA-50-5044 TCGA-50-5045 TCGA-50-5049 TCGA-50-5051 TCGA-50-5055 
        4.93        20.48        71.47        48.82        14.96        25.81 
TCGA-50-5066 TCGA-50-5068 TCGA-50-5072 TCGA-50-5930 TCGA-50-5931 TCGA-50-5932 
        9.76        49.28         8.05         9.27         8.78        35.87 
TCGA-50-5935 TCGA-50-5936 TCGA-50-5939 TCGA-50-5941 TCGA-50-5942 TCGA-50-5944 
       21.47         8.45        15.12         9.37         4.44        12.26 
TCGA-50-5946 TCGA-50-6593 TCGA-50-6595 TCGA-50-6597 TCGA-55-1592 TCGA-55-1594 
       11.47        11.05         6.21        33.37        23.05        38.73 
TCGA-55-1595 TCGA-55-1596 TCGA-55-5899 TCGA-55-6543 TCGA-55-6642 TCGA-55-6712 
       48.62        45.17         2.86         0.07        32.61         0.79 
TCGA-64-1677 TCGA-64-1678 TCGA-64-1680 TCGA-64-5774 TCGA-64-5775 TCGA-64-5779 
       20.65        39.09        37.02        83.84         0.10        16.67 
TCGA-64-5781 TCGA-64-5815 TCGA-67-3770 TCGA-67-3771 TCGA-67-3772 TCGA-67-3773 
       39.52         7.33         0.99         1.97         0.59         2.04 
TCGA-67-3774 TCGA-67-6215 TCGA-67-6216 TCGA-67-6217 TCGA-71-6725 TCGA-73-4658 
        0.59         0.89         0.69        13.87         2.01        52.57 
TCGA-73-4659 TCGA-73-4662 TCGA-73-4666 TCGA-73-4668 TCGA-73-4675 TCGA-73-4676 
       23.38        29.95        20.28        15.35         1.32         4.01 
TCGA-73-4677 TCGA-91-6828 TCGA-91-6829 TCGA-91-6831 TCGA-91-6835 TCGA-91-6836 
        1.25         1.22        41.33         1.28         1.15         0.36 

  PCDH11X MUTATED PCDH11X WILD-TYPE 
             0.46              0.07 
  PCDH11X MUTATED PCDH11X WILD-TYPE 
            77.88             85.32 
  PCDH11X MUTATED PCDH11X WILD-TYPE 
            18.87             13.07 
[1] "0.5 - 77.9 (18.9)" "0.1 - 85.3 (13.1)"
       TCGA-05-4249        TCGA-05-4250        TCGA-05-4382        TCGA-05-4384 
"PCDH11X WILD-TYPE" "PCDH11X WILD-TYPE"   "PCDH11X MUTATED" "PCDH11X WILD-TYPE" 
       TCGA-05-4390        TCGA-05-4396        TCGA-05-4397        TCGA-05-4398 
"PCDH11X WILD-TYPE"   "PCDH11X MUTATED"   "PCDH11X MUTATED" "PCDH11X WILD-TYPE" 
       TCGA-05-4402        TCGA-05-4405        TCGA-05-4415        TCGA-05-4417 
"PCDH11X WILD-TYPE"   "PCDH11X MUTATED" "PCDH11X WILD-TYPE" "PCDH11X WILD-TYPE" 
       TCGA-05-4418        TCGA-05-4420        TCGA-05-4424        TCGA-05-4426 
"PCDH11X WILD-TYPE" "PCDH11X WILD-TYPE"   "PCDH11X MUTATED" "PCDH11X WILD-TYPE" 
       TCGA-05-4427        TCGA-05-4430        TCGA-05-4432        TCGA-05-4433 
  "PCDH11X MUTATED" "PCDH11X WILD-TYPE" "PCDH11X WILD-TYPE" "PCDH11X WILD-TYPE" 
       TCGA-05-4434        TCGA-05-5420        TCGA-05-5423        TCGA-05-5425 
"PCDH11X WILD-TYPE" "PCDH11X WILD-TYPE" "PCDH11X WILD-TYPE" "PCDH11X WILD-TYPE" 
       TCGA-05-5429        TCGA-05-5715        TCGA-35-3615        TCGA-35-4122 
"PCDH11X WILD-TYPE" "PCDH11X WILD-TYPE" "PCDH11X WILD-TYPE" "PCDH11X WILD-TYPE" 
       TCGA-35-4123        TCGA-35-5375        TCGA-38-4625        TCGA-38-4626 
"PCDH11X WILD-TYPE" "PCDH11X WILD-TYPE" "PCDH11X WILD-TYPE" "PCDH11X WILD-TYPE" 
       TCGA-38-4627        TCGA-38-4628        TCGA-38-4629        TCGA-38-4630 
"PCDH11X WILD-TYPE" "PCDH11X WILD-TYPE" "PCDH11X WILD-TYPE" "PCDH11X WILD-TYPE" 
       TCGA-38-4631        TCGA-38-4632        TCGA-38-6178        TCGA-44-2655 
  "PCDH11X MUTATED" "PCDH11X WILD-TYPE" "PCDH11X WILD-TYPE"   "PCDH11X MUTATED" 
       TCGA-44-2656        TCGA-44-2657        TCGA-44-2659        TCGA-44-2661 
"PCDH11X WILD-TYPE"   "PCDH11X MUTATED" "PCDH11X WILD-TYPE" "PCDH11X WILD-TYPE" 
       TCGA-44-2662        TCGA-44-2665        TCGA-44-2666        TCGA-44-2668 
"PCDH11X WILD-TYPE" "PCDH11X WILD-TYPE" "PCDH11X WILD-TYPE"   "PCDH11X MUTATED" 
       TCGA-44-3396        TCGA-44-3398        TCGA-44-3918        TCGA-44-3919 
"PCDH11X WILD-TYPE" "PCDH11X WILD-TYPE"   "PCDH11X MUTATED" "PCDH11X WILD-TYPE" 
       TCGA-44-4112        TCGA-44-5643        TCGA-44-5645        TCGA-44-6144 
"PCDH11X WILD-TYPE"   "PCDH11X MUTATED" "PCDH11X WILD-TYPE" "PCDH11X WILD-TYPE" 
       TCGA-44-6145        TCGA-44-6146        TCGA-44-6147        TCGA-44-6148 
"PCDH11X WILD-TYPE" "PCDH11X WILD-TYPE"   "PCDH11X MUTATED" "PCDH11X WILD-TYPE" 
       TCGA-44-6774        TCGA-44-6775        TCGA-44-6776        TCGA-44-6777 
"PCDH11X WILD-TYPE" "PCDH11X WILD-TYPE" "PCDH11X WILD-TYPE" "PCDH11X WILD-TYPE" 
       TCGA-44-6778        TCGA-44-6779        TCGA-49-4486        TCGA-49-4487 
"PCDH11X WILD-TYPE" "PCDH11X WILD-TYPE" "PCDH11X WILD-TYPE"   "PCDH11X MUTATED" 
       TCGA-49-4488        TCGA-49-4490        TCGA-49-4494        TCGA-49-4501 
"PCDH11X WILD-TYPE" "PCDH11X WILD-TYPE" "PCDH11X WILD-TYPE" "PCDH11X WILD-TYPE" 
       TCGA-49-4505        TCGA-49-4506        TCGA-49-4507        TCGA-49-4510 
  "PCDH11X MUTATED" "PCDH11X WILD-TYPE" "PCDH11X WILD-TYPE" "PCDH11X WILD-TYPE" 
       TCGA-49-4512        TCGA-49-4514        TCGA-49-6742        TCGA-49-6743 
"PCDH11X WILD-TYPE" "PCDH11X WILD-TYPE" "PCDH11X WILD-TYPE" "PCDH11X WILD-TYPE" 
       TCGA-49-6744        TCGA-49-6745        TCGA-50-5044        TCGA-50-5045 
"PCDH11X WILD-TYPE" "PCDH11X WILD-TYPE" "PCDH11X WILD-TYPE" "PCDH11X WILD-TYPE" 
       TCGA-50-5049        TCGA-50-5051        TCGA-50-5055        TCGA-50-5066 
"PCDH11X WILD-TYPE" "PCDH11X WILD-TYPE" "PCDH11X WILD-TYPE" "PCDH11X WILD-TYPE" 
       TCGA-50-5068        TCGA-50-5072        TCGA-50-5930        TCGA-50-5931 
"PCDH11X WILD-TYPE" "PCDH11X WILD-TYPE" "PCDH11X WILD-TYPE" "PCDH11X WILD-TYPE" 
       TCGA-50-5932        TCGA-50-5933        TCGA-50-5935        TCGA-50-5936 
"PCDH11X WILD-TYPE"   "PCDH11X MUTATED" "PCDH11X WILD-TYPE" "PCDH11X WILD-TYPE" 
       TCGA-50-5939        TCGA-50-5941        TCGA-50-5942        TCGA-50-5944 
"PCDH11X WILD-TYPE" "PCDH11X WILD-TYPE" "PCDH11X WILD-TYPE" "PCDH11X WILD-TYPE" 
       TCGA-50-5946        TCGA-50-6590        TCGA-50-6591        TCGA-50-6592 
"PCDH11X WILD-TYPE"   "PCDH11X MUTATED"   "PCDH11X MUTATED"   "PCDH11X MUTATED" 
       TCGA-50-6593        TCGA-50-6594        TCGA-50-6595        TCGA-50-6597 
"PCDH11X WILD-TYPE"   "PCDH11X MUTATED" "PCDH11X WILD-TYPE" "PCDH11X WILD-TYPE" 
       TCGA-55-1592        TCGA-55-1594        TCGA-55-1595        TCGA-55-1596 
"PCDH11X WILD-TYPE" "PCDH11X WILD-TYPE" "PCDH11X WILD-TYPE" "PCDH11X WILD-TYPE" 
       TCGA-55-5899        TCGA-55-6543        TCGA-55-6642        TCGA-55-6712 
"PCDH11X WILD-TYPE" "PCDH11X WILD-TYPE" "PCDH11X WILD-TYPE" "PCDH11X WILD-TYPE" 
       TCGA-64-1676        TCGA-64-1677        TCGA-64-1678        TCGA-64-1680 
  "PCDH11X MUTATED" "PCDH11X WILD-TYPE" "PCDH11X WILD-TYPE" "PCDH11X WILD-TYPE" 
       TCGA-64-5774        TCGA-64-5775        TCGA-64-5778        TCGA-64-5779 
"PCDH11X WILD-TYPE" "PCDH11X WILD-TYPE"   "PCDH11X MUTATED" "PCDH11X WILD-TYPE" 
       TCGA-64-5781        TCGA-64-5815        TCGA-67-3770        TCGA-67-3771 
"PCDH11X WILD-TYPE" "PCDH11X WILD-TYPE" "PCDH11X WILD-TYPE" "PCDH11X WILD-TYPE" 
       TCGA-67-3772        TCGA-67-3773        TCGA-67-3774        TCGA-67-6215 
"PCDH11X WILD-TYPE" "PCDH11X WILD-TYPE" "PCDH11X WILD-TYPE" "PCDH11X WILD-TYPE" 
       TCGA-67-6216        TCGA-67-6217        TCGA-71-6725        TCGA-73-4658 
"PCDH11X WILD-TYPE" "PCDH11X WILD-TYPE" "PCDH11X WILD-TYPE" "PCDH11X WILD-TYPE" 
       TCGA-73-4659        TCGA-73-4662        TCGA-73-4666        TCGA-73-4668 
"PCDH11X WILD-TYPE" "PCDH11X WILD-TYPE" "PCDH11X WILD-TYPE" "PCDH11X WILD-TYPE" 
       TCGA-73-4670        TCGA-73-4675        TCGA-73-4676        TCGA-73-4677 
  "PCDH11X MUTATED" "PCDH11X WILD-TYPE" "PCDH11X WILD-TYPE" "PCDH11X WILD-TYPE" 
       TCGA-91-6828        TCGA-91-6829        TCGA-91-6831        TCGA-91-6835 
"PCDH11X WILD-TYPE" "PCDH11X WILD-TYPE" "PCDH11X WILD-TYPE" "PCDH11X WILD-TYPE" 
       TCGA-91-6836 
"PCDH11X WILD-TYPE" 
       TCGA-05-4249        TCGA-05-4250        TCGA-05-4382        TCGA-05-4384 
"PCDH11X WILD-TYPE" "PCDH11X WILD-TYPE"   "PCDH11X MUTATED" "PCDH11X WILD-TYPE" 
       TCGA-05-4390        TCGA-05-4396        TCGA-05-4397        TCGA-05-4398 
"PCDH11X WILD-TYPE"   "PCDH11X MUTATED"   "PCDH11X MUTATED" "PCDH11X WILD-TYPE" 
       TCGA-05-4402        TCGA-05-4405        TCGA-05-4415        TCGA-05-4417 
"PCDH11X WILD-TYPE"   "PCDH11X MUTATED" "PCDH11X WILD-TYPE" "PCDH11X WILD-TYPE" 
       TCGA-05-4418        TCGA-05-4420        TCGA-05-4424        TCGA-05-4426 
"PCDH11X WILD-TYPE" "PCDH11X WILD-TYPE"   "PCDH11X MUTATED" "PCDH11X WILD-TYPE" 
       TCGA-05-4427        TCGA-05-4430        TCGA-05-4432        TCGA-05-4433 
  "PCDH11X MUTATED" "PCDH11X WILD-TYPE" "PCDH11X WILD-TYPE" "PCDH11X WILD-TYPE" 
       TCGA-05-4434        TCGA-05-5420        TCGA-05-5423        TCGA-05-5425 
"PCDH11X WILD-TYPE" "PCDH11X WILD-TYPE" "PCDH11X WILD-TYPE" "PCDH11X WILD-TYPE" 
       TCGA-05-5429        TCGA-05-5715        TCGA-35-3615        TCGA-35-4122 
"PCDH11X WILD-TYPE" "PCDH11X WILD-TYPE" "PCDH11X WILD-TYPE" "PCDH11X WILD-TYPE" 
       TCGA-35-4123        TCGA-35-5375        TCGA-38-4625        TCGA-38-4626 
"PCDH11X WILD-TYPE" "PCDH11X WILD-TYPE" "PCDH11X WILD-TYPE" "PCDH11X WILD-TYPE" 
       TCGA-38-4627        TCGA-38-4628        TCGA-38-4629        TCGA-38-4630 
"PCDH11X WILD-TYPE" "PCDH11X WILD-TYPE" "PCDH11X WILD-TYPE" "PCDH11X WILD-TYPE" 
       TCGA-38-4631        TCGA-38-4632        TCGA-38-6178        TCGA-44-2655 
  "PCDH11X MUTATED" "PCDH11X WILD-TYPE" "PCDH11X WILD-TYPE"   "PCDH11X MUTATED" 
       TCGA-44-2656        TCGA-44-2657        TCGA-44-2659        TCGA-44-2661 
"PCDH11X WILD-TYPE"   "PCDH11X MUTATED" "PCDH11X WILD-TYPE" "PCDH11X WILD-TYPE" 
       TCGA-44-2662        TCGA-44-2665        TCGA-44-2666        TCGA-44-2668 
"PCDH11X WILD-TYPE" "PCDH11X WILD-TYPE" "PCDH11X WILD-TYPE"   "PCDH11X MUTATED" 
       TCGA-44-3396        TCGA-44-3398        TCGA-44-3918        TCGA-44-3919 
"PCDH11X WILD-TYPE" "PCDH11X WILD-TYPE"   "PCDH11X MUTATED" "PCDH11X WILD-TYPE" 
       TCGA-44-4112        TCGA-44-5643        TCGA-44-5645        TCGA-44-6144 
"PCDH11X WILD-TYPE"   "PCDH11X MUTATED" "PCDH11X WILD-TYPE" "PCDH11X WILD-TYPE" 
       TCGA-44-6145        TCGA-44-6146        TCGA-44-6147        TCGA-44-6148 
"PCDH11X WILD-TYPE" "PCDH11X WILD-TYPE"   "PCDH11X MUTATED" "PCDH11X WILD-TYPE" 
       TCGA-44-6774        TCGA-44-6775        TCGA-44-6776        TCGA-44-6777 
"PCDH11X WILD-TYPE" "PCDH11X WILD-TYPE" "PCDH11X WILD-TYPE" "PCDH11X WILD-TYPE" 
       TCGA-44-6778        TCGA-44-6779        TCGA-49-4486        TCGA-49-4487 
"PCDH11X WILD-TYPE" "PCDH11X WILD-TYPE" "PCDH11X WILD-TYPE"   "PCDH11X MUTATED" 
       TCGA-49-4488        TCGA-49-4490        TCGA-49-4494        TCGA-49-4501 
"PCDH11X WILD-TYPE" "PCDH11X WILD-TYPE" "PCDH11X WILD-TYPE" "PCDH11X WILD-TYPE" 
       TCGA-49-4505        TCGA-49-4506        TCGA-49-4507        TCGA-49-4510 
  "PCDH11X MUTATED" "PCDH11X WILD-TYPE" "PCDH11X WILD-TYPE" "PCDH11X WILD-TYPE" 
       TCGA-49-4512        TCGA-49-4514        TCGA-49-6742        TCGA-49-6743 
"PCDH11X WILD-TYPE" "PCDH11X WILD-TYPE" "PCDH11X WILD-TYPE" "PCDH11X WILD-TYPE" 
       TCGA-49-6744        TCGA-49-6745        TCGA-50-5044        TCGA-50-5045 
"PCDH11X WILD-TYPE" "PCDH11X WILD-TYPE" "PCDH11X WILD-TYPE" "PCDH11X WILD-TYPE" 
       TCGA-50-5049        TCGA-50-5051        TCGA-50-5055        TCGA-50-5066 
"PCDH11X WILD-TYPE" "PCDH11X WILD-TYPE" "PCDH11X WILD-TYPE" "PCDH11X WILD-TYPE" 
       TCGA-50-5068        TCGA-50-5072        TCGA-50-5930        TCGA-50-5931 
"PCDH11X WILD-TYPE" "PCDH11X WILD-TYPE" "PCDH11X WILD-TYPE" "PCDH11X WILD-TYPE" 
       TCGA-50-5932        TCGA-50-5933        TCGA-50-5935        TCGA-50-5936 
"PCDH11X WILD-TYPE"   "PCDH11X MUTATED" "PCDH11X WILD-TYPE" "PCDH11X WILD-TYPE" 
       TCGA-50-5939        TCGA-50-5941        TCGA-50-5942        TCGA-50-5944 
"PCDH11X WILD-TYPE" "PCDH11X WILD-TYPE" "PCDH11X WILD-TYPE" "PCDH11X WILD-TYPE" 
       TCGA-50-5946        TCGA-50-6590        TCGA-50-6591        TCGA-50-6592 
"PCDH11X WILD-TYPE"   "PCDH11X MUTATED"   "PCDH11X MUTATED"   "PCDH11X MUTATED" 
       TCGA-50-6593        TCGA-50-6594        TCGA-50-6595        TCGA-50-6597 
"PCDH11X WILD-TYPE"   "PCDH11X MUTATED" "PCDH11X WILD-TYPE" "PCDH11X WILD-TYPE" 
       TCGA-55-1592        TCGA-55-1594        TCGA-55-1595        TCGA-55-1596 
"PCDH11X WILD-TYPE" "PCDH11X WILD-TYPE" "PCDH11X WILD-TYPE" "PCDH11X WILD-TYPE" 
       TCGA-55-5899        TCGA-55-6543        TCGA-55-6642        TCGA-55-6712 
"PCDH11X WILD-TYPE" "PCDH11X WILD-TYPE" "PCDH11X WILD-TYPE" "PCDH11X WILD-TYPE" 
       TCGA-64-1676        TCGA-64-1677        TCGA-64-1678        TCGA-64-1680 
  "PCDH11X MUTATED" "PCDH11X WILD-TYPE" "PCDH11X WILD-TYPE" "PCDH11X WILD-TYPE" 
       TCGA-64-5774        TCGA-64-5775        TCGA-64-5778        TCGA-64-5779 
"PCDH11X WILD-TYPE" "PCDH11X WILD-TYPE"   "PCDH11X MUTATED" "PCDH11X WILD-TYPE" 
       TCGA-64-5781        TCGA-64-5815        TCGA-67-3770        TCGA-67-3771 
"PCDH11X WILD-TYPE" "PCDH11X WILD-TYPE" "PCDH11X WILD-TYPE" "PCDH11X WILD-TYPE" 
       TCGA-67-3772        TCGA-67-3773        TCGA-67-3774        TCGA-67-6215 
"PCDH11X WILD-TYPE" "PCDH11X WILD-TYPE" "PCDH11X WILD-TYPE" "PCDH11X WILD-TYPE" 
       TCGA-67-6216        TCGA-67-6217        TCGA-71-6725        TCGA-73-4658 
"PCDH11X WILD-TYPE" "PCDH11X WILD-TYPE" "PCDH11X WILD-TYPE" "PCDH11X WILD-TYPE" 
       TCGA-73-4659        TCGA-73-4662        TCGA-73-4666        TCGA-73-4668 
"PCDH11X WILD-TYPE" "PCDH11X WILD-TYPE" "PCDH11X WILD-TYPE" "PCDH11X WILD-TYPE" 
       TCGA-73-4670        TCGA-73-4675        TCGA-73-4676        TCGA-73-4677 
  "PCDH11X MUTATED" "PCDH11X WILD-TYPE" "PCDH11X WILD-TYPE" "PCDH11X WILD-TYPE" 
       TCGA-91-6828        TCGA-91-6829        TCGA-91-6831        TCGA-91-6835 
"PCDH11X WILD-TYPE" "PCDH11X WILD-TYPE" "PCDH11X WILD-TYPE" "PCDH11X WILD-TYPE" 
       TCGA-91-6836 
"PCDH11X WILD-TYPE" 
       TCGA-05-4249        TCGA-05-4250        TCGA-05-4382        TCGA-05-4384 
"PCDH11X WILD-TYPE" "PCDH11X WILD-TYPE"   "PCDH11X MUTATED" "PCDH11X WILD-TYPE" 
       TCGA-05-4390        TCGA-05-4396        TCGA-05-4397        TCGA-05-4398 
"PCDH11X WILD-TYPE"   "PCDH11X MUTATED"   "PCDH11X MUTATED" "PCDH11X WILD-TYPE" 
       TCGA-05-4402        TCGA-05-4405        TCGA-05-4415        TCGA-05-4417 
"PCDH11X WILD-TYPE"   "PCDH11X MUTATED" "PCDH11X WILD-TYPE" "PCDH11X WILD-TYPE" 
       TCGA-05-4418        TCGA-05-4420        TCGA-05-4424        TCGA-05-4426 
"PCDH11X WILD-TYPE" "PCDH11X WILD-TYPE"   "PCDH11X MUTATED" "PCDH11X WILD-TYPE" 
       TCGA-05-4427        TCGA-05-4430        TCGA-05-4432        TCGA-05-4433 
  "PCDH11X MUTATED" "PCDH11X WILD-TYPE" "PCDH11X WILD-TYPE" "PCDH11X WILD-TYPE" 
       TCGA-05-4434        TCGA-05-5420        TCGA-05-5423        TCGA-05-5425 
"PCDH11X WILD-TYPE" "PCDH11X WILD-TYPE" "PCDH11X WILD-TYPE" "PCDH11X WILD-TYPE" 
       TCGA-05-5429        TCGA-05-5715        TCGA-35-3615        TCGA-35-4122 
"PCDH11X WILD-TYPE" "PCDH11X WILD-TYPE" "PCDH11X WILD-TYPE" "PCDH11X WILD-TYPE" 
       TCGA-35-4123        TCGA-35-5375        TCGA-38-4625        TCGA-38-4626 
"PCDH11X WILD-TYPE" "PCDH11X WILD-TYPE" "PCDH11X WILD-TYPE" "PCDH11X WILD-TYPE" 
       TCGA-38-4627        TCGA-38-4628        TCGA-38-4629        TCGA-38-4630 
"PCDH11X WILD-TYPE" "PCDH11X WILD-TYPE" "PCDH11X WILD-TYPE" "PCDH11X WILD-TYPE" 
       TCGA-38-4631        TCGA-38-4632        TCGA-38-6178        TCGA-44-2655 
  "PCDH11X MUTATED" "PCDH11X WILD-TYPE" "PCDH11X WILD-TYPE"   "PCDH11X MUTATED" 
       TCGA-44-2656        TCGA-44-2657        TCGA-44-2659        TCGA-44-2661 
"PCDH11X WILD-TYPE"   "PCDH11X MUTATED" "PCDH11X WILD-TYPE" "PCDH11X WILD-TYPE" 
       TCGA-44-2662        TCGA-44-2665        TCGA-44-2666        TCGA-44-2668 
"PCDH11X WILD-TYPE" "PCDH11X WILD-TYPE" "PCDH11X WILD-TYPE"   "PCDH11X MUTATED" 
       TCGA-44-3396        TCGA-44-3398        TCGA-44-3918        TCGA-44-3919 
"PCDH11X WILD-TYPE" "PCDH11X WILD-TYPE"   "PCDH11X MUTATED" "PCDH11X WILD-TYPE" 
       TCGA-44-4112        TCGA-44-5643        TCGA-44-5645        TCGA-44-6144 
"PCDH11X WILD-TYPE"   "PCDH11X MUTATED" "PCDH11X WILD-TYPE" "PCDH11X WILD-TYPE" 
       TCGA-44-6145        TCGA-44-6146        TCGA-44-6147        TCGA-44-6148 
"PCDH11X WILD-TYPE" "PCDH11X WILD-TYPE"   "PCDH11X MUTATED" "PCDH11X WILD-TYPE" 
       TCGA-44-6774        TCGA-44-6775        TCGA-44-6776        TCGA-44-6777 
"PCDH11X WILD-TYPE" "PCDH11X WILD-TYPE" "PCDH11X WILD-TYPE" "PCDH11X WILD-TYPE" 
       TCGA-44-6778        TCGA-44-6779        TCGA-49-4486        TCGA-49-4487 
"PCDH11X WILD-TYPE" "PCDH11X WILD-TYPE" "PCDH11X WILD-TYPE"   "PCDH11X MUTATED" 
       TCGA-49-4488        TCGA-49-4490        TCGA-49-4494        TCGA-49-4501 
"PCDH11X WILD-TYPE" "PCDH11X WILD-TYPE" "PCDH11X WILD-TYPE" "PCDH11X WILD-TYPE" 
       TCGA-49-4505        TCGA-49-4506        TCGA-49-4507        TCGA-49-4510 
  "PCDH11X MUTATED" "PCDH11X WILD-TYPE" "PCDH11X WILD-TYPE" "PCDH11X WILD-TYPE" 
       TCGA-49-4512        TCGA-49-4514        TCGA-49-6742        TCGA-49-6743 
"PCDH11X WILD-TYPE" "PCDH11X WILD-TYPE" "PCDH11X WILD-TYPE" "PCDH11X WILD-TYPE" 
       TCGA-49-6744        TCGA-49-6745        TCGA-50-5044        TCGA-50-5045 
"PCDH11X WILD-TYPE" "PCDH11X WILD-TYPE" "PCDH11X WILD-TYPE" "PCDH11X WILD-TYPE" 
       TCGA-50-5049        TCGA-50-5051        TCGA-50-5055        TCGA-50-5066 
"PCDH11X WILD-TYPE" "PCDH11X WILD-TYPE" "PCDH11X WILD-TYPE" "PCDH11X WILD-TYPE" 
       TCGA-50-5068        TCGA-50-5072        TCGA-50-5930        TCGA-50-5931 
"PCDH11X WILD-TYPE" "PCDH11X WILD-TYPE" "PCDH11X WILD-TYPE" "PCDH11X WILD-TYPE" 
       TCGA-50-5932        TCGA-50-5933        TCGA-50-5935        TCGA-50-5936 
"PCDH11X WILD-TYPE"   "PCDH11X MUTATED" "PCDH11X WILD-TYPE" "PCDH11X WILD-TYPE" 
       TCGA-50-5939        TCGA-50-5941        TCGA-50-5942        TCGA-50-5944 
"PCDH11X WILD-TYPE" "PCDH11X WILD-TYPE" "PCDH11X WILD-TYPE" "PCDH11X WILD-TYPE" 
       TCGA-50-5946        TCGA-50-6590        TCGA-50-6591        TCGA-50-6592 
"PCDH11X WILD-TYPE"   "PCDH11X MUTATED"   "PCDH11X MUTATED"   "PCDH11X MUTATED" 
       TCGA-50-6593        TCGA-50-6594        TCGA-50-6595        TCGA-50-6597 
"PCDH11X WILD-TYPE"   "PCDH11X MUTATED" "PCDH11X WILD-TYPE" "PCDH11X WILD-TYPE" 
       TCGA-55-1592        TCGA-55-1594        TCGA-55-1595        TCGA-55-1596 
"PCDH11X WILD-TYPE" "PCDH11X WILD-TYPE" "PCDH11X WILD-TYPE" "PCDH11X WILD-TYPE" 
       TCGA-55-5899        TCGA-55-6543        TCGA-55-6642        TCGA-55-6712 
"PCDH11X WILD-TYPE" "PCDH11X WILD-TYPE" "PCDH11X WILD-TYPE" "PCDH11X WILD-TYPE" 
       TCGA-64-1676        TCGA-64-1677        TCGA-64-1678        TCGA-64-1680 
  "PCDH11X MUTATED" "PCDH11X WILD-TYPE" "PCDH11X WILD-TYPE" "PCDH11X WILD-TYPE" 
       TCGA-64-5774        TCGA-64-5775        TCGA-64-5778        TCGA-64-5779 
"PCDH11X WILD-TYPE" "PCDH11X WILD-TYPE"   "PCDH11X MUTATED" "PCDH11X WILD-TYPE" 
       TCGA-64-5781        TCGA-64-5815        TCGA-67-3770        TCGA-67-3771 
"PCDH11X WILD-TYPE" "PCDH11X WILD-TYPE" "PCDH11X WILD-TYPE" "PCDH11X WILD-TYPE" 
       TCGA-67-3772        TCGA-67-3773        TCGA-67-3774        TCGA-67-6215 
"PCDH11X WILD-TYPE" "PCDH11X WILD-TYPE" "PCDH11X WILD-TYPE" "PCDH11X WILD-TYPE" 
       TCGA-67-6216        TCGA-67-6217        TCGA-71-6725        TCGA-73-4658 
"PCDH11X WILD-TYPE" "PCDH11X WILD-TYPE" "PCDH11X WILD-TYPE" "PCDH11X WILD-TYPE" 
       TCGA-73-4659        TCGA-73-4662        TCGA-73-4666        TCGA-73-4668 
"PCDH11X WILD-TYPE" "PCDH11X WILD-TYPE" "PCDH11X WILD-TYPE" "PCDH11X WILD-TYPE" 
       TCGA-73-4670        TCGA-73-4675        TCGA-73-4676        TCGA-73-4677 
  "PCDH11X MUTATED" "PCDH11X WILD-TYPE" "PCDH11X WILD-TYPE" "PCDH11X WILD-TYPE" 
       TCGA-91-6828        TCGA-91-6829        TCGA-91-6831        TCGA-91-6835 
"PCDH11X WILD-TYPE" "PCDH11X WILD-TYPE" "PCDH11X WILD-TYPE" "PCDH11X WILD-TYPE" 
       TCGA-91-6836 
"PCDH11X WILD-TYPE" 
[1] "hr=" "1.3"
D209V2, continuous
D209V3, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  PCDH11X MUTATED     15   11
  PCDH11X WILD-TYPE   78   68
        clus
vv       PCDH11X MUTATED PCDH11X WILD-TYPE
  FEMALE              15                78
  MALE                11                68
D209V4, continuous
[1] "Remove cluster labels:" "PCDH11X MUTATED"       
clus
  PCDH11X MUTATED PCDH11X WILD-TYPE 
                1                11 
       TCGA-35-4122        TCGA-35-4123        TCGA-35-5375        TCGA-64-1677 
"PCDH11X WILD-TYPE" "PCDH11X WILD-TYPE" "PCDH11X WILD-TYPE" "PCDH11X WILD-TYPE" 
       TCGA-71-6725        TCGA-73-4659        TCGA-73-4662        TCGA-73-4666 
"PCDH11X WILD-TYPE" "PCDH11X WILD-TYPE" "PCDH11X WILD-TYPE" "PCDH11X WILD-TYPE" 
       TCGA-73-4668        TCGA-73-4676        TCGA-75-5122 
"PCDH11X WILD-TYPE" "PCDH11X WILD-TYPE" "PCDH11X WILD-TYPE" 
D209V5, multiclass
D209V6, multiclass
    clus
vv   PCDH11X MUTATED PCDH11X WILD-TYPE
  T1               5                36
  T2              17                91
  T3               2                12
  T4               2                 6
D209V7, multiclass
       clus
vv      PCDH11X MUTATED PCDH11X WILD-TYPE
  N0                 16                79
  N1                  4                33
  N2+N3               4                31
D209V8, multiclass
    clus
vv   PCDH11X MUTATED PCDH11X WILD-TYPE
  M0              23               114
  M1               3                 6
  MX               0                22
D209V9, multiclass
     clus
vv    PCDH11X MUTATED PCDH11X WILD-TYPE
  I                15                73
  II                4                29
  III               4                35
  IV                3                 6
D209V10, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  PCDH11X MUTATED      2   24
  PCDH11X WILD-TYPE   14  132
     clus
vv    PCDH11X MUTATED PCDH11X WILD-TYPE
  NO                2                14
  YES              24               132
D209V11, continuous
D209V12, continuous
D209V13, multiclass
                                             clus
vv                                            PCDH11X MUTATED PCDH11X WILD-TYPE
  CURRENT REFORMED SMOKER FOR < OR = 15 YEARS              16                46
  CURRENT REFORMED SMOKER FOR > 15 YEARS                    4                42
  CURRENT SMOKER                                            4                24
  LIFELONG NON-SMOKER                                       1                23
D209V14, continuous

Clustering(210) Variable = ZNF257 MUTATION ANALYSIS
D210V1, survival
                  sevent
clus2               0  1
  ZNF257 MUTATED    6  2
  ZNF257 WILD-TYPE 93 48
  ZNF257 MUTATED ZNF257 WILD-TYPE 
               8              141 
  ZNF257 MUTATED ZNF257 WILD-TYPE 
               2               48 
$`ZNF257 MUTATED`
TCGA-05-4397 TCGA-05-4398 TCGA-38-4625 TCGA-44-3396 TCGA-50-5941 TCGA-50-6590 
       24.03        47.05        47.61        10.22         9.37        42.31 
TCGA-64-5778 TCGA-73-4668 
       30.44        15.35 

$`ZNF257 WILD-TYPE`
TCGA-05-4249 TCGA-05-4250 TCGA-05-4382 TCGA-05-4384 TCGA-05-4390 TCGA-05-4396 
       38.07         3.98        19.92        14.01        37.02         9.96 
TCGA-05-4402 TCGA-05-4405 TCGA-05-4415 TCGA-05-4417 TCGA-05-4418 TCGA-05-4420 
        8.02        20.05         2.96        14.93         8.98        29.95 
TCGA-05-4424 TCGA-05-4426 TCGA-05-4427 TCGA-05-4430 TCGA-05-4432 TCGA-05-4433 
       30.02        26.01        26.01        25.02        25.02        24.00 
TCGA-05-4434 TCGA-05-5420 TCGA-05-5423 TCGA-05-5425 TCGA-05-5429 TCGA-05-5715 
       15.02         1.02         4.96         2.96         0.99         2.04 
TCGA-35-3615 TCGA-35-4122 TCGA-35-4123 TCGA-35-5375 TCGA-38-4626 TCGA-38-4627 
        0.46         7.36         5.95         8.68        85.32        37.71 
TCGA-38-4628 TCGA-38-4629 TCGA-38-4630 TCGA-38-4631 TCGA-38-4632 TCGA-38-6178 
       49.02        28.37        35.28        11.64        44.61         5.19 
TCGA-44-2655 TCGA-44-2656 TCGA-44-2657 TCGA-44-2659 TCGA-44-2661 TCGA-44-2662 
       18.87        19.10        13.15        17.39         3.39        15.78 
TCGA-44-2665 TCGA-44-2666 TCGA-44-2668 TCGA-44-3398 TCGA-44-3918 TCGA-44-3919 
       13.15         3.19         8.09         8.32         6.44         6.21 
TCGA-44-4112 TCGA-44-5643 TCGA-44-5645 TCGA-44-6144 TCGA-44-6145 TCGA-44-6146 
        4.60         3.48         6.84         0.30         3.35         9.93 
TCGA-44-6147 TCGA-44-6148 TCGA-44-6774 TCGA-44-6775 TCGA-44-6776 TCGA-44-6777 
        7.76         3.12         5.42         2.70        63.72        32.45 
TCGA-44-6778 TCGA-44-6779 TCGA-49-4486 TCGA-49-4487 TCGA-49-4488 TCGA-49-4490 
       36.49        16.41        76.21        28.11        28.57        12.66 
TCGA-49-4494 TCGA-49-4501 TCGA-49-4505 TCGA-49-4506 TCGA-49-4507 TCGA-49-4510 
       35.54        46.72        14.07        32.84         8.81        29.46 
TCGA-49-4512 TCGA-49-4514 TCGA-49-6742 TCGA-49-6743 TCGA-49-6744 TCGA-49-6745 
       29.75        43.20        15.02        12.13        12.99         4.93 
TCGA-50-5044 TCGA-50-5045 TCGA-50-5049 TCGA-50-5051 TCGA-50-5055 TCGA-50-5066 
       20.48        71.47        48.82        14.96        25.81         9.76 
TCGA-50-5068 TCGA-50-5072 TCGA-50-5930 TCGA-50-5931 TCGA-50-5932 TCGA-50-5933 
       49.28         8.05         9.27         8.78        35.87        77.88 
TCGA-50-5935 TCGA-50-5936 TCGA-50-5939 TCGA-50-5942 TCGA-50-5944 TCGA-50-5946 
       21.47         8.45        15.12         4.44        12.26        11.47 
TCGA-50-6591 TCGA-50-6592 TCGA-50-6593 TCGA-50-6594 TCGA-50-6595 TCGA-50-6597 
        3.88        25.51        11.05        12.16         6.21        33.37 
TCGA-55-1592 TCGA-55-1594 TCGA-55-1595 TCGA-55-1596 TCGA-55-5899 TCGA-55-6543 
       23.05        38.73        48.62        45.17         2.86         0.07 
TCGA-55-6642 TCGA-55-6712 TCGA-64-1676 TCGA-64-1677 TCGA-64-1678 TCGA-64-1680 
       32.61         0.79        56.81        20.65        39.09        37.02 
TCGA-64-5774 TCGA-64-5775 TCGA-64-5779 TCGA-64-5781 TCGA-64-5815 TCGA-67-3770 
       83.84         0.10        16.67        39.52         7.33         0.99 
TCGA-67-3771 TCGA-67-3772 TCGA-67-3773 TCGA-67-3774 TCGA-67-6215 TCGA-67-6216 
        1.97         0.59         2.04         0.59         0.89         0.69 
TCGA-67-6217 TCGA-71-6725 TCGA-73-4658 TCGA-73-4659 TCGA-73-4662 TCGA-73-4666 
       13.87         2.01        52.57        23.38        29.95        20.28 
TCGA-73-4670 TCGA-73-4675 TCGA-73-4676 TCGA-73-4677 TCGA-91-6828 TCGA-91-6829 
        0.46         1.32         4.01         1.25         1.22        41.33 
TCGA-91-6831 TCGA-91-6835 TCGA-91-6836 
        1.28         1.15         0.36 

  ZNF257 MUTATED ZNF257 WILD-TYPE 
            9.37             0.07 
  ZNF257 MUTATED ZNF257 WILD-TYPE 
           47.61            85.32 
  ZNF257 MUTATED ZNF257 WILD-TYPE 
          27.235           13.150 
[1] "9.4 - 47.6 (27.2)" "0.1 - 85.3 (13.2)"
      TCGA-05-4249       TCGA-05-4250       TCGA-05-4382       TCGA-05-4384 
"ZNF257 WILD-TYPE" "ZNF257 WILD-TYPE" "ZNF257 WILD-TYPE" "ZNF257 WILD-TYPE" 
      TCGA-05-4390       TCGA-05-4396       TCGA-05-4397       TCGA-05-4398 
"ZNF257 WILD-TYPE" "ZNF257 WILD-TYPE"   "ZNF257 MUTATED"   "ZNF257 MUTATED" 
      TCGA-05-4402       TCGA-05-4405       TCGA-05-4415       TCGA-05-4417 
"ZNF257 WILD-TYPE" "ZNF257 WILD-TYPE" "ZNF257 WILD-TYPE" "ZNF257 WILD-TYPE" 
      TCGA-05-4418       TCGA-05-4420       TCGA-05-4424       TCGA-05-4426 
"ZNF257 WILD-TYPE" "ZNF257 WILD-TYPE" "ZNF257 WILD-TYPE" "ZNF257 WILD-TYPE" 
      TCGA-05-4427       TCGA-05-4430       TCGA-05-4432       TCGA-05-4433 
"ZNF257 WILD-TYPE" "ZNF257 WILD-TYPE" "ZNF257 WILD-TYPE" "ZNF257 WILD-TYPE" 
      TCGA-05-4434       TCGA-05-5420       TCGA-05-5423       TCGA-05-5425 
"ZNF257 WILD-TYPE" "ZNF257 WILD-TYPE" "ZNF257 WILD-TYPE" "ZNF257 WILD-TYPE" 
      TCGA-05-5429       TCGA-05-5715       TCGA-35-3615       TCGA-35-4122 
"ZNF257 WILD-TYPE" "ZNF257 WILD-TYPE" "ZNF257 WILD-TYPE" "ZNF257 WILD-TYPE" 
      TCGA-35-4123       TCGA-35-5375       TCGA-38-4625       TCGA-38-4626 
"ZNF257 WILD-TYPE" "ZNF257 WILD-TYPE"   "ZNF257 MUTATED" "ZNF257 WILD-TYPE" 
      TCGA-38-4627       TCGA-38-4628       TCGA-38-4629       TCGA-38-4630 
"ZNF257 WILD-TYPE" "ZNF257 WILD-TYPE" "ZNF257 WILD-TYPE" "ZNF257 WILD-TYPE" 
      TCGA-38-4631       TCGA-38-4632       TCGA-38-6178       TCGA-44-2655 
"ZNF257 WILD-TYPE" "ZNF257 WILD-TYPE" "ZNF257 WILD-TYPE" "ZNF257 WILD-TYPE" 
      TCGA-44-2656       TCGA-44-2657       TCGA-44-2659       TCGA-44-2661 
"ZNF257 WILD-TYPE" "ZNF257 WILD-TYPE" "ZNF257 WILD-TYPE" "ZNF257 WILD-TYPE" 
      TCGA-44-2662       TCGA-44-2665       TCGA-44-2666       TCGA-44-2668 
"ZNF257 WILD-TYPE" "ZNF257 WILD-TYPE" "ZNF257 WILD-TYPE" "ZNF257 WILD-TYPE" 
      TCGA-44-3396       TCGA-44-3398       TCGA-44-3918       TCGA-44-3919 
  "ZNF257 MUTATED" "ZNF257 WILD-TYPE" "ZNF257 WILD-TYPE" "ZNF257 WILD-TYPE" 
      TCGA-44-4112       TCGA-44-5643       TCGA-44-5645       TCGA-44-6144 
"ZNF257 WILD-TYPE" "ZNF257 WILD-TYPE" "ZNF257 WILD-TYPE" "ZNF257 WILD-TYPE" 
      TCGA-44-6145       TCGA-44-6146       TCGA-44-6147       TCGA-44-6148 
"ZNF257 WILD-TYPE" "ZNF257 WILD-TYPE" "ZNF257 WILD-TYPE" "ZNF257 WILD-TYPE" 
      TCGA-44-6774       TCGA-44-6775       TCGA-44-6776       TCGA-44-6777 
"ZNF257 WILD-TYPE" "ZNF257 WILD-TYPE" "ZNF257 WILD-TYPE" "ZNF257 WILD-TYPE" 
      TCGA-44-6778       TCGA-44-6779       TCGA-49-4486       TCGA-49-4487 
"ZNF257 WILD-TYPE" "ZNF257 WILD-TYPE" "ZNF257 WILD-TYPE" "ZNF257 WILD-TYPE" 
      TCGA-49-4488       TCGA-49-4490       TCGA-49-4494       TCGA-49-4501 
"ZNF257 WILD-TYPE" "ZNF257 WILD-TYPE" "ZNF257 WILD-TYPE" "ZNF257 WILD-TYPE" 
      TCGA-49-4505       TCGA-49-4506       TCGA-49-4507       TCGA-49-4510 
"ZNF257 WILD-TYPE" "ZNF257 WILD-TYPE" "ZNF257 WILD-TYPE" "ZNF257 WILD-TYPE" 
      TCGA-49-4512       TCGA-49-4514       TCGA-49-6742       TCGA-49-6743 
"ZNF257 WILD-TYPE" "ZNF257 WILD-TYPE" "ZNF257 WILD-TYPE" "ZNF257 WILD-TYPE" 
      TCGA-49-6744       TCGA-49-6745       TCGA-50-5044       TCGA-50-5045 
"ZNF257 WILD-TYPE" "ZNF257 WILD-TYPE" "ZNF257 WILD-TYPE" "ZNF257 WILD-TYPE" 
      TCGA-50-5049       TCGA-50-5051       TCGA-50-5055       TCGA-50-5066 
"ZNF257 WILD-TYPE" "ZNF257 WILD-TYPE" "ZNF257 WILD-TYPE" "ZNF257 WILD-TYPE" 
      TCGA-50-5068       TCGA-50-5072       TCGA-50-5930       TCGA-50-5931 
"ZNF257 WILD-TYPE" "ZNF257 WILD-TYPE" "ZNF257 WILD-TYPE" "ZNF257 WILD-TYPE" 
      TCGA-50-5932       TCGA-50-5933       TCGA-50-5935       TCGA-50-5936 
"ZNF257 WILD-TYPE" "ZNF257 WILD-TYPE" "ZNF257 WILD-TYPE" "ZNF257 WILD-TYPE" 
      TCGA-50-5939       TCGA-50-5941       TCGA-50-5942       TCGA-50-5944 
"ZNF257 WILD-TYPE"   "ZNF257 MUTATED" "ZNF257 WILD-TYPE" "ZNF257 WILD-TYPE" 
      TCGA-50-5946       TCGA-50-6590       TCGA-50-6591       TCGA-50-6592 
"ZNF257 WILD-TYPE"   "ZNF257 MUTATED" "ZNF257 WILD-TYPE" "ZNF257 WILD-TYPE" 
      TCGA-50-6593       TCGA-50-6594       TCGA-50-6595       TCGA-50-6597 
"ZNF257 WILD-TYPE" "ZNF257 WILD-TYPE" "ZNF257 WILD-TYPE" "ZNF257 WILD-TYPE" 
      TCGA-55-1592       TCGA-55-1594       TCGA-55-1595       TCGA-55-1596 
"ZNF257 WILD-TYPE" "ZNF257 WILD-TYPE" "ZNF257 WILD-TYPE" "ZNF257 WILD-TYPE" 
      TCGA-55-5899       TCGA-55-6543       TCGA-55-6642       TCGA-55-6712 
"ZNF257 WILD-TYPE" "ZNF257 WILD-TYPE" "ZNF257 WILD-TYPE" "ZNF257 WILD-TYPE" 
      TCGA-64-1676       TCGA-64-1677       TCGA-64-1678       TCGA-64-1680 
"ZNF257 WILD-TYPE" "ZNF257 WILD-TYPE" "ZNF257 WILD-TYPE" "ZNF257 WILD-TYPE" 
      TCGA-64-5774       TCGA-64-5775       TCGA-64-5778       TCGA-64-5779 
"ZNF257 WILD-TYPE" "ZNF257 WILD-TYPE"   "ZNF257 MUTATED" "ZNF257 WILD-TYPE" 
      TCGA-64-5781       TCGA-64-5815       TCGA-67-3770       TCGA-67-3771 
"ZNF257 WILD-TYPE" "ZNF257 WILD-TYPE" "ZNF257 WILD-TYPE" "ZNF257 WILD-TYPE" 
      TCGA-67-3772       TCGA-67-3773       TCGA-67-3774       TCGA-67-6215 
"ZNF257 WILD-TYPE" "ZNF257 WILD-TYPE" "ZNF257 WILD-TYPE" "ZNF257 WILD-TYPE" 
      TCGA-67-6216       TCGA-67-6217       TCGA-71-6725       TCGA-73-4658 
"ZNF257 WILD-TYPE" "ZNF257 WILD-TYPE" "ZNF257 WILD-TYPE" "ZNF257 WILD-TYPE" 
      TCGA-73-4659       TCGA-73-4662       TCGA-73-4666       TCGA-73-4668 
"ZNF257 WILD-TYPE" "ZNF257 WILD-TYPE" "ZNF257 WILD-TYPE"   "ZNF257 MUTATED" 
      TCGA-73-4670       TCGA-73-4675       TCGA-73-4676       TCGA-73-4677 
"ZNF257 WILD-TYPE" "ZNF257 WILD-TYPE" "ZNF257 WILD-TYPE" "ZNF257 WILD-TYPE" 
      TCGA-91-6828       TCGA-91-6829       TCGA-91-6831       TCGA-91-6835 
"ZNF257 WILD-TYPE" "ZNF257 WILD-TYPE" "ZNF257 WILD-TYPE" "ZNF257 WILD-TYPE" 
      TCGA-91-6836 
"ZNF257 WILD-TYPE" 
      TCGA-05-4249       TCGA-05-4250       TCGA-05-4382       TCGA-05-4384 
"ZNF257 WILD-TYPE" "ZNF257 WILD-TYPE" "ZNF257 WILD-TYPE" "ZNF257 WILD-TYPE" 
      TCGA-05-4390       TCGA-05-4396       TCGA-05-4397       TCGA-05-4398 
"ZNF257 WILD-TYPE" "ZNF257 WILD-TYPE"   "ZNF257 MUTATED"   "ZNF257 MUTATED" 
      TCGA-05-4402       TCGA-05-4405       TCGA-05-4415       TCGA-05-4417 
"ZNF257 WILD-TYPE" "ZNF257 WILD-TYPE" "ZNF257 WILD-TYPE" "ZNF257 WILD-TYPE" 
      TCGA-05-4418       TCGA-05-4420       TCGA-05-4424       TCGA-05-4426 
"ZNF257 WILD-TYPE" "ZNF257 WILD-TYPE" "ZNF257 WILD-TYPE" "ZNF257 WILD-TYPE" 
      TCGA-05-4427       TCGA-05-4430       TCGA-05-4432       TCGA-05-4433 
"ZNF257 WILD-TYPE" "ZNF257 WILD-TYPE" "ZNF257 WILD-TYPE" "ZNF257 WILD-TYPE" 
      TCGA-05-4434       TCGA-05-5420       TCGA-05-5423       TCGA-05-5425 
"ZNF257 WILD-TYPE" "ZNF257 WILD-TYPE" "ZNF257 WILD-TYPE" "ZNF257 WILD-TYPE" 
      TCGA-05-5429       TCGA-05-5715       TCGA-35-3615       TCGA-35-4122 
"ZNF257 WILD-TYPE" "ZNF257 WILD-TYPE" "ZNF257 WILD-TYPE" "ZNF257 WILD-TYPE" 
      TCGA-35-4123       TCGA-35-5375       TCGA-38-4625       TCGA-38-4626 
"ZNF257 WILD-TYPE" "ZNF257 WILD-TYPE"   "ZNF257 MUTATED" "ZNF257 WILD-TYPE" 
      TCGA-38-4627       TCGA-38-4628       TCGA-38-4629       TCGA-38-4630 
"ZNF257 WILD-TYPE" "ZNF257 WILD-TYPE" "ZNF257 WILD-TYPE" "ZNF257 WILD-TYPE" 
      TCGA-38-4631       TCGA-38-4632       TCGA-38-6178       TCGA-44-2655 
"ZNF257 WILD-TYPE" "ZNF257 WILD-TYPE" "ZNF257 WILD-TYPE" "ZNF257 WILD-TYPE" 
      TCGA-44-2656       TCGA-44-2657       TCGA-44-2659       TCGA-44-2661 
"ZNF257 WILD-TYPE" "ZNF257 WILD-TYPE" "ZNF257 WILD-TYPE" "ZNF257 WILD-TYPE" 
      TCGA-44-2662       TCGA-44-2665       TCGA-44-2666       TCGA-44-2668 
"ZNF257 WILD-TYPE" "ZNF257 WILD-TYPE" "ZNF257 WILD-TYPE" "ZNF257 WILD-TYPE" 
      TCGA-44-3396       TCGA-44-3398       TCGA-44-3918       TCGA-44-3919 
  "ZNF257 MUTATED" "ZNF257 WILD-TYPE" "ZNF257 WILD-TYPE" "ZNF257 WILD-TYPE" 
      TCGA-44-4112       TCGA-44-5643       TCGA-44-5645       TCGA-44-6144 
"ZNF257 WILD-TYPE" "ZNF257 WILD-TYPE" "ZNF257 WILD-TYPE" "ZNF257 WILD-TYPE" 
      TCGA-44-6145       TCGA-44-6146       TCGA-44-6147       TCGA-44-6148 
"ZNF257 WILD-TYPE" "ZNF257 WILD-TYPE" "ZNF257 WILD-TYPE" "ZNF257 WILD-TYPE" 
      TCGA-44-6774       TCGA-44-6775       TCGA-44-6776       TCGA-44-6777 
"ZNF257 WILD-TYPE" "ZNF257 WILD-TYPE" "ZNF257 WILD-TYPE" "ZNF257 WILD-TYPE" 
      TCGA-44-6778       TCGA-44-6779       TCGA-49-4486       TCGA-49-4487 
"ZNF257 WILD-TYPE" "ZNF257 WILD-TYPE" "ZNF257 WILD-TYPE" "ZNF257 WILD-TYPE" 
      TCGA-49-4488       TCGA-49-4490       TCGA-49-4494       TCGA-49-4501 
"ZNF257 WILD-TYPE" "ZNF257 WILD-TYPE" "ZNF257 WILD-TYPE" "ZNF257 WILD-TYPE" 
      TCGA-49-4505       TCGA-49-4506       TCGA-49-4507       TCGA-49-4510 
"ZNF257 WILD-TYPE" "ZNF257 WILD-TYPE" "ZNF257 WILD-TYPE" "ZNF257 WILD-TYPE" 
      TCGA-49-4512       TCGA-49-4514       TCGA-49-6742       TCGA-49-6743 
"ZNF257 WILD-TYPE" "ZNF257 WILD-TYPE" "ZNF257 WILD-TYPE" "ZNF257 WILD-TYPE" 
      TCGA-49-6744       TCGA-49-6745       TCGA-50-5044       TCGA-50-5045 
"ZNF257 WILD-TYPE" "ZNF257 WILD-TYPE" "ZNF257 WILD-TYPE" "ZNF257 WILD-TYPE" 
      TCGA-50-5049       TCGA-50-5051       TCGA-50-5055       TCGA-50-5066 
"ZNF257 WILD-TYPE" "ZNF257 WILD-TYPE" "ZNF257 WILD-TYPE" "ZNF257 WILD-TYPE" 
      TCGA-50-5068       TCGA-50-5072       TCGA-50-5930       TCGA-50-5931 
"ZNF257 WILD-TYPE" "ZNF257 WILD-TYPE" "ZNF257 WILD-TYPE" "ZNF257 WILD-TYPE" 
      TCGA-50-5932       TCGA-50-5933       TCGA-50-5935       TCGA-50-5936 
"ZNF257 WILD-TYPE" "ZNF257 WILD-TYPE" "ZNF257 WILD-TYPE" "ZNF257 WILD-TYPE" 
      TCGA-50-5939       TCGA-50-5941       TCGA-50-5942       TCGA-50-5944 
"ZNF257 WILD-TYPE"   "ZNF257 MUTATED" "ZNF257 WILD-TYPE" "ZNF257 WILD-TYPE" 
      TCGA-50-5946       TCGA-50-6590       TCGA-50-6591       TCGA-50-6592 
"ZNF257 WILD-TYPE"   "ZNF257 MUTATED" "ZNF257 WILD-TYPE" "ZNF257 WILD-TYPE" 
      TCGA-50-6593       TCGA-50-6594       TCGA-50-6595       TCGA-50-6597 
"ZNF257 WILD-TYPE" "ZNF257 WILD-TYPE" "ZNF257 WILD-TYPE" "ZNF257 WILD-TYPE" 
      TCGA-55-1592       TCGA-55-1594       TCGA-55-1595       TCGA-55-1596 
"ZNF257 WILD-TYPE" "ZNF257 WILD-TYPE" "ZNF257 WILD-TYPE" "ZNF257 WILD-TYPE" 
      TCGA-55-5899       TCGA-55-6543       TCGA-55-6642       TCGA-55-6712 
"ZNF257 WILD-TYPE" "ZNF257 WILD-TYPE" "ZNF257 WILD-TYPE" "ZNF257 WILD-TYPE" 
      TCGA-64-1676       TCGA-64-1677       TCGA-64-1678       TCGA-64-1680 
"ZNF257 WILD-TYPE" "ZNF257 WILD-TYPE" "ZNF257 WILD-TYPE" "ZNF257 WILD-TYPE" 
      TCGA-64-5774       TCGA-64-5775       TCGA-64-5778       TCGA-64-5779 
"ZNF257 WILD-TYPE" "ZNF257 WILD-TYPE"   "ZNF257 MUTATED" "ZNF257 WILD-TYPE" 
      TCGA-64-5781       TCGA-64-5815       TCGA-67-3770       TCGA-67-3771 
"ZNF257 WILD-TYPE" "ZNF257 WILD-TYPE" "ZNF257 WILD-TYPE" "ZNF257 WILD-TYPE" 
      TCGA-67-3772       TCGA-67-3773       TCGA-67-3774       TCGA-67-6215 
"ZNF257 WILD-TYPE" "ZNF257 WILD-TYPE" "ZNF257 WILD-TYPE" "ZNF257 WILD-TYPE" 
      TCGA-67-6216       TCGA-67-6217       TCGA-71-6725       TCGA-73-4658 
"ZNF257 WILD-TYPE" "ZNF257 WILD-TYPE" "ZNF257 WILD-TYPE" "ZNF257 WILD-TYPE" 
      TCGA-73-4659       TCGA-73-4662       TCGA-73-4666       TCGA-73-4668 
"ZNF257 WILD-TYPE" "ZNF257 WILD-TYPE" "ZNF257 WILD-TYPE"   "ZNF257 MUTATED" 
      TCGA-73-4670       TCGA-73-4675       TCGA-73-4676       TCGA-73-4677 
"ZNF257 WILD-TYPE" "ZNF257 WILD-TYPE" "ZNF257 WILD-TYPE" "ZNF257 WILD-TYPE" 
      TCGA-91-6828       TCGA-91-6829       TCGA-91-6831       TCGA-91-6835 
"ZNF257 WILD-TYPE" "ZNF257 WILD-TYPE" "ZNF257 WILD-TYPE" "ZNF257 WILD-TYPE" 
      TCGA-91-6836 
"ZNF257 WILD-TYPE" 
      TCGA-05-4249       TCGA-05-4250       TCGA-05-4382       TCGA-05-4384 
"ZNF257 WILD-TYPE" "ZNF257 WILD-TYPE" "ZNF257 WILD-TYPE" "ZNF257 WILD-TYPE" 
      TCGA-05-4390       TCGA-05-4396       TCGA-05-4397       TCGA-05-4398 
"ZNF257 WILD-TYPE" "ZNF257 WILD-TYPE"   "ZNF257 MUTATED"   "ZNF257 MUTATED" 
      TCGA-05-4402       TCGA-05-4405       TCGA-05-4415       TCGA-05-4417 
"ZNF257 WILD-TYPE" "ZNF257 WILD-TYPE" "ZNF257 WILD-TYPE" "ZNF257 WILD-TYPE" 
      TCGA-05-4418       TCGA-05-4420       TCGA-05-4424       TCGA-05-4426 
"ZNF257 WILD-TYPE" "ZNF257 WILD-TYPE" "ZNF257 WILD-TYPE" "ZNF257 WILD-TYPE" 
      TCGA-05-4427       TCGA-05-4430       TCGA-05-4432       TCGA-05-4433 
"ZNF257 WILD-TYPE" "ZNF257 WILD-TYPE" "ZNF257 WILD-TYPE" "ZNF257 WILD-TYPE" 
      TCGA-05-4434       TCGA-05-5420       TCGA-05-5423       TCGA-05-5425 
"ZNF257 WILD-TYPE" "ZNF257 WILD-TYPE" "ZNF257 WILD-TYPE" "ZNF257 WILD-TYPE" 
      TCGA-05-5429       TCGA-05-5715       TCGA-35-3615       TCGA-35-4122 
"ZNF257 WILD-TYPE" "ZNF257 WILD-TYPE" "ZNF257 WILD-TYPE" "ZNF257 WILD-TYPE" 
      TCGA-35-4123       TCGA-35-5375       TCGA-38-4625       TCGA-38-4626 
"ZNF257 WILD-TYPE" "ZNF257 WILD-TYPE"   "ZNF257 MUTATED" "ZNF257 WILD-TYPE" 
      TCGA-38-4627       TCGA-38-4628       TCGA-38-4629       TCGA-38-4630 
"ZNF257 WILD-TYPE" "ZNF257 WILD-TYPE" "ZNF257 WILD-TYPE" "ZNF257 WILD-TYPE" 
      TCGA-38-4631       TCGA-38-4632       TCGA-38-6178       TCGA-44-2655 
"ZNF257 WILD-TYPE" "ZNF257 WILD-TYPE" "ZNF257 WILD-TYPE" "ZNF257 WILD-TYPE" 
      TCGA-44-2656       TCGA-44-2657       TCGA-44-2659       TCGA-44-2661 
"ZNF257 WILD-TYPE" "ZNF257 WILD-TYPE" "ZNF257 WILD-TYPE" "ZNF257 WILD-TYPE" 
      TCGA-44-2662       TCGA-44-2665       TCGA-44-2666       TCGA-44-2668 
"ZNF257 WILD-TYPE" "ZNF257 WILD-TYPE" "ZNF257 WILD-TYPE" "ZNF257 WILD-TYPE" 
      TCGA-44-3396       TCGA-44-3398       TCGA-44-3918       TCGA-44-3919 
  "ZNF257 MUTATED" "ZNF257 WILD-TYPE" "ZNF257 WILD-TYPE" "ZNF257 WILD-TYPE" 
      TCGA-44-4112       TCGA-44-5643       TCGA-44-5645       TCGA-44-6144 
"ZNF257 WILD-TYPE" "ZNF257 WILD-TYPE" "ZNF257 WILD-TYPE" "ZNF257 WILD-TYPE" 
      TCGA-44-6145       TCGA-44-6146       TCGA-44-6147       TCGA-44-6148 
"ZNF257 WILD-TYPE" "ZNF257 WILD-TYPE" "ZNF257 WILD-TYPE" "ZNF257 WILD-TYPE" 
      TCGA-44-6774       TCGA-44-6775       TCGA-44-6776       TCGA-44-6777 
"ZNF257 WILD-TYPE" "ZNF257 WILD-TYPE" "ZNF257 WILD-TYPE" "ZNF257 WILD-TYPE" 
      TCGA-44-6778       TCGA-44-6779       TCGA-49-4486       TCGA-49-4487 
"ZNF257 WILD-TYPE" "ZNF257 WILD-TYPE" "ZNF257 WILD-TYPE" "ZNF257 WILD-TYPE" 
      TCGA-49-4488       TCGA-49-4490       TCGA-49-4494       TCGA-49-4501 
"ZNF257 WILD-TYPE" "ZNF257 WILD-TYPE" "ZNF257 WILD-TYPE" "ZNF257 WILD-TYPE" 
      TCGA-49-4505       TCGA-49-4506       TCGA-49-4507       TCGA-49-4510 
"ZNF257 WILD-TYPE" "ZNF257 WILD-TYPE" "ZNF257 WILD-TYPE" "ZNF257 WILD-TYPE" 
      TCGA-49-4512       TCGA-49-4514       TCGA-49-6742       TCGA-49-6743 
"ZNF257 WILD-TYPE" "ZNF257 WILD-TYPE" "ZNF257 WILD-TYPE" "ZNF257 WILD-TYPE" 
      TCGA-49-6744       TCGA-49-6745       TCGA-50-5044       TCGA-50-5045 
"ZNF257 WILD-TYPE" "ZNF257 WILD-TYPE" "ZNF257 WILD-TYPE" "ZNF257 WILD-TYPE" 
      TCGA-50-5049       TCGA-50-5051       TCGA-50-5055       TCGA-50-5066 
"ZNF257 WILD-TYPE" "ZNF257 WILD-TYPE" "ZNF257 WILD-TYPE" "ZNF257 WILD-TYPE" 
      TCGA-50-5068       TCGA-50-5072       TCGA-50-5930       TCGA-50-5931 
"ZNF257 WILD-TYPE" "ZNF257 WILD-TYPE" "ZNF257 WILD-TYPE" "ZNF257 WILD-TYPE" 
      TCGA-50-5932       TCGA-50-5933       TCGA-50-5935       TCGA-50-5936 
"ZNF257 WILD-TYPE" "ZNF257 WILD-TYPE" "ZNF257 WILD-TYPE" "ZNF257 WILD-TYPE" 
      TCGA-50-5939       TCGA-50-5941       TCGA-50-5942       TCGA-50-5944 
"ZNF257 WILD-TYPE"   "ZNF257 MUTATED" "ZNF257 WILD-TYPE" "ZNF257 WILD-TYPE" 
      TCGA-50-5946       TCGA-50-6590       TCGA-50-6591       TCGA-50-6592 
"ZNF257 WILD-TYPE"   "ZNF257 MUTATED" "ZNF257 WILD-TYPE" "ZNF257 WILD-TYPE" 
      TCGA-50-6593       TCGA-50-6594       TCGA-50-6595       TCGA-50-6597 
"ZNF257 WILD-TYPE" "ZNF257 WILD-TYPE" "ZNF257 WILD-TYPE" "ZNF257 WILD-TYPE" 
      TCGA-55-1592       TCGA-55-1594       TCGA-55-1595       TCGA-55-1596 
"ZNF257 WILD-TYPE" "ZNF257 WILD-TYPE" "ZNF257 WILD-TYPE" "ZNF257 WILD-TYPE" 
      TCGA-55-5899       TCGA-55-6543       TCGA-55-6642       TCGA-55-6712 
"ZNF257 WILD-TYPE" "ZNF257 WILD-TYPE" "ZNF257 WILD-TYPE" "ZNF257 WILD-TYPE" 
      TCGA-64-1676       TCGA-64-1677       TCGA-64-1678       TCGA-64-1680 
"ZNF257 WILD-TYPE" "ZNF257 WILD-TYPE" "ZNF257 WILD-TYPE" "ZNF257 WILD-TYPE" 
      TCGA-64-5774       TCGA-64-5775       TCGA-64-5778       TCGA-64-5779 
"ZNF257 WILD-TYPE" "ZNF257 WILD-TYPE"   "ZNF257 MUTATED" "ZNF257 WILD-TYPE" 
      TCGA-64-5781       TCGA-64-5815       TCGA-67-3770       TCGA-67-3771 
"ZNF257 WILD-TYPE" "ZNF257 WILD-TYPE" "ZNF257 WILD-TYPE" "ZNF257 WILD-TYPE" 
      TCGA-67-3772       TCGA-67-3773       TCGA-67-3774       TCGA-67-6215 
"ZNF257 WILD-TYPE" "ZNF257 WILD-TYPE" "ZNF257 WILD-TYPE" "ZNF257 WILD-TYPE" 
      TCGA-67-6216       TCGA-67-6217       TCGA-71-6725       TCGA-73-4658 
"ZNF257 WILD-TYPE" "ZNF257 WILD-TYPE" "ZNF257 WILD-TYPE" "ZNF257 WILD-TYPE" 
      TCGA-73-4659       TCGA-73-4662       TCGA-73-4666       TCGA-73-4668 
"ZNF257 WILD-TYPE" "ZNF257 WILD-TYPE" "ZNF257 WILD-TYPE"   "ZNF257 MUTATED" 
      TCGA-73-4670       TCGA-73-4675       TCGA-73-4676       TCGA-73-4677 
"ZNF257 WILD-TYPE" "ZNF257 WILD-TYPE" "ZNF257 WILD-TYPE" "ZNF257 WILD-TYPE" 
      TCGA-91-6828       TCGA-91-6829       TCGA-91-6831       TCGA-91-6835 
"ZNF257 WILD-TYPE" "ZNF257 WILD-TYPE" "ZNF257 WILD-TYPE" "ZNF257 WILD-TYPE" 
      TCGA-91-6836 
"ZNF257 WILD-TYPE" 
[1] "hr=" "2.1"
D210V2, continuous
D210V3, binary
[1] "tbl2"
                  cls
clus               [,1] [,2]
  ZNF257 MUTATED      6    2
  ZNF257 WILD-TYPE   87   77
        clus
vv       ZNF257 MUTATED ZNF257 WILD-TYPE
  FEMALE              6               87
  MALE                2               77
D210V4, continuous
[1] "Remove cluster labels:" "ZNF257 MUTATED"        
clus
  ZNF257 MUTATED ZNF257 WILD-TYPE 
               2               10 
      TCGA-35-4122       TCGA-35-4123       TCGA-35-5375       TCGA-64-1677 
"ZNF257 WILD-TYPE" "ZNF257 WILD-TYPE" "ZNF257 WILD-TYPE" "ZNF257 WILD-TYPE" 
      TCGA-71-6725       TCGA-73-4659       TCGA-73-4662       TCGA-73-4666 
"ZNF257 WILD-TYPE" "ZNF257 WILD-TYPE" "ZNF257 WILD-TYPE" "ZNF257 WILD-TYPE" 
      TCGA-73-4676       TCGA-75-5122 
"ZNF257 WILD-TYPE" "ZNF257 WILD-TYPE" 
D210V5, multiclass
D210V6, multiclass
    clus
vv   ZNF257 MUTATED ZNF257 WILD-TYPE
  T1              0               41
  T2              7              101
  T3              0               14
  T4              1                7
D210V7, multiclass
       clus
vv      ZNF257 MUTATED ZNF257 WILD-TYPE
  N0                 3               92
  N1                 2               35
  N2+N3              3               32
D210V8, multiclass
    clus
vv   ZNF257 MUTATED ZNF257 WILD-TYPE
  M0              8              129
  M1              0                9
  MX              0               22
D210V9, multiclass
     clus
vv    ZNF257 MUTATED ZNF257 WILD-TYPE
  I                3               85
  II               2               31
  III              3               36
  IV               0                9
D210V10, binary
[1] "tbl2"
                  cls
clus               [,1] [,2]
  ZNF257 MUTATED      0    8
  ZNF257 WILD-TYPE   16  148
     clus
vv    ZNF257 MUTATED ZNF257 WILD-TYPE
  NO               0               16
  YES              8              148
D210V11, continuous
D210V12, continuous
D210V13, multiclass
                                             clus
vv                                            ZNF257 MUTATED ZNF257 WILD-TYPE
  CURRENT REFORMED SMOKER FOR < OR = 15 YEARS              3               59
  CURRENT REFORMED SMOKER FOR > 15 YEARS                   0               46
  CURRENT SMOKER                                           5               23
  LIFELONG NON-SMOKER                                      0               24
D210V14, continuous

Clustering(211) Variable = C8ORF37 MUTATION ANALYSIS
D211V1, survival
                   sevent
clus2                0  1
  C8ORF37 MUTATED    3  2
  C8ORF37 WILD-TYPE 96 48
  C8ORF37 MUTATED C8ORF37 WILD-TYPE 
                5               144 
  C8ORF37 MUTATED C8ORF37 WILD-TYPE 
                2                48 
$`C8ORF37 MUTATED`
TCGA-05-4396 TCGA-05-4427 TCGA-38-4631 TCGA-50-5049 TCGA-50-6597 
        9.96        26.01        11.64        48.82        33.37 

$`C8ORF37 WILD-TYPE`
TCGA-05-4249 TCGA-05-4250 TCGA-05-4382 TCGA-05-4384 TCGA-05-4390 TCGA-05-4397 
       38.07         3.98        19.92        14.01        37.02        24.03 
TCGA-05-4398 TCGA-05-4402 TCGA-05-4405 TCGA-05-4415 TCGA-05-4417 TCGA-05-4418 
       47.05         8.02        20.05         2.96        14.93         8.98 
TCGA-05-4420 TCGA-05-4424 TCGA-05-4426 TCGA-05-4430 TCGA-05-4432 TCGA-05-4433 
       29.95        30.02        26.01        25.02        25.02        24.00 
TCGA-05-4434 TCGA-05-5420 TCGA-05-5423 TCGA-05-5425 TCGA-05-5429 TCGA-05-5715 
       15.02         1.02         4.96         2.96         0.99         2.04 
TCGA-35-3615 TCGA-35-4122 TCGA-35-4123 TCGA-35-5375 TCGA-38-4625 TCGA-38-4626 
        0.46         7.36         5.95         8.68        47.61        85.32 
TCGA-38-4627 TCGA-38-4628 TCGA-38-4629 TCGA-38-4630 TCGA-38-4632 TCGA-38-6178 
       37.71        49.02        28.37        35.28        44.61         5.19 
TCGA-44-2655 TCGA-44-2656 TCGA-44-2657 TCGA-44-2659 TCGA-44-2661 TCGA-44-2662 
       18.87        19.10        13.15        17.39         3.39        15.78 
TCGA-44-2665 TCGA-44-2666 TCGA-44-2668 TCGA-44-3396 TCGA-44-3398 TCGA-44-3918 
       13.15         3.19         8.09        10.22         8.32         6.44 
TCGA-44-3919 TCGA-44-4112 TCGA-44-5643 TCGA-44-5645 TCGA-44-6144 TCGA-44-6145 
        6.21         4.60         3.48         6.84         0.30         3.35 
TCGA-44-6146 TCGA-44-6147 TCGA-44-6148 TCGA-44-6774 TCGA-44-6775 TCGA-44-6776 
        9.93         7.76         3.12         5.42         2.70        63.72 
TCGA-44-6777 TCGA-44-6778 TCGA-44-6779 TCGA-49-4486 TCGA-49-4487 TCGA-49-4488 
       32.45        36.49        16.41        76.21        28.11        28.57 
TCGA-49-4490 TCGA-49-4494 TCGA-49-4501 TCGA-49-4505 TCGA-49-4506 TCGA-49-4507 
       12.66        35.54        46.72        14.07        32.84         8.81 
TCGA-49-4510 TCGA-49-4512 TCGA-49-4514 TCGA-49-6742 TCGA-49-6743 TCGA-49-6744 
       29.46        29.75        43.20        15.02        12.13        12.99 
TCGA-49-6745 TCGA-50-5044 TCGA-50-5045 TCGA-50-5051 TCGA-50-5055 TCGA-50-5066 
        4.93        20.48        71.47        14.96        25.81         9.76 
TCGA-50-5068 TCGA-50-5072 TCGA-50-5930 TCGA-50-5931 TCGA-50-5932 TCGA-50-5933 
       49.28         8.05         9.27         8.78        35.87        77.88 
TCGA-50-5935 TCGA-50-5936 TCGA-50-5939 TCGA-50-5941 TCGA-50-5942 TCGA-50-5944 
       21.47         8.45        15.12         9.37         4.44        12.26 
TCGA-50-5946 TCGA-50-6590 TCGA-50-6591 TCGA-50-6592 TCGA-50-6593 TCGA-50-6594 
       11.47        42.31         3.88        25.51        11.05        12.16 
TCGA-50-6595 TCGA-55-1592 TCGA-55-1594 TCGA-55-1595 TCGA-55-1596 TCGA-55-5899 
        6.21        23.05        38.73        48.62        45.17         2.86 
TCGA-55-6543 TCGA-55-6642 TCGA-55-6712 TCGA-64-1676 TCGA-64-1677 TCGA-64-1678 
        0.07        32.61         0.79        56.81        20.65        39.09 
TCGA-64-1680 TCGA-64-5774 TCGA-64-5775 TCGA-64-5778 TCGA-64-5779 TCGA-64-5781 
       37.02        83.84         0.10        30.44        16.67        39.52 
TCGA-64-5815 TCGA-67-3770 TCGA-67-3771 TCGA-67-3772 TCGA-67-3773 TCGA-67-3774 
        7.33         0.99         1.97         0.59         2.04         0.59 
TCGA-67-6215 TCGA-67-6216 TCGA-67-6217 TCGA-71-6725 TCGA-73-4658 TCGA-73-4659 
        0.89         0.69        13.87         2.01        52.57        23.38 
TCGA-73-4662 TCGA-73-4666 TCGA-73-4668 TCGA-73-4670 TCGA-73-4675 TCGA-73-4676 
       29.95        20.28        15.35         0.46         1.32         4.01 
TCGA-73-4677 TCGA-91-6828 TCGA-91-6829 TCGA-91-6831 TCGA-91-6835 TCGA-91-6836 
        1.25         1.22        41.33         1.28         1.15         0.36 

  C8ORF37 MUTATED C8ORF37 WILD-TYPE 
             9.96              0.07 
  C8ORF37 MUTATED C8ORF37 WILD-TYPE 
            48.82             85.32 
  C8ORF37 MUTATED C8ORF37 WILD-TYPE 
            26.01             13.51 
[1] "10.0 - 48.8 (26.0)" "0.1 - 85.3 (13.5)" 
       TCGA-05-4249        TCGA-05-4250        TCGA-05-4382        TCGA-05-4384 
"C8ORF37 WILD-TYPE" "C8ORF37 WILD-TYPE" "C8ORF37 WILD-TYPE" "C8ORF37 WILD-TYPE" 
       TCGA-05-4390        TCGA-05-4396        TCGA-05-4397        TCGA-05-4398 
"C8ORF37 WILD-TYPE"   "C8ORF37 MUTATED" "C8ORF37 WILD-TYPE" "C8ORF37 WILD-TYPE" 
       TCGA-05-4402        TCGA-05-4405        TCGA-05-4415        TCGA-05-4417 
"C8ORF37 WILD-TYPE" "C8ORF37 WILD-TYPE" "C8ORF37 WILD-TYPE" "C8ORF37 WILD-TYPE" 
       TCGA-05-4418        TCGA-05-4420        TCGA-05-4424        TCGA-05-4426 
"C8ORF37 WILD-TYPE" "C8ORF37 WILD-TYPE" "C8ORF37 WILD-TYPE" "C8ORF37 WILD-TYPE" 
       TCGA-05-4427        TCGA-05-4430        TCGA-05-4432        TCGA-05-4433 
  "C8ORF37 MUTATED" "C8ORF37 WILD-TYPE" "C8ORF37 WILD-TYPE" "C8ORF37 WILD-TYPE" 
       TCGA-05-4434        TCGA-05-5420        TCGA-05-5423        TCGA-05-5425 
"C8ORF37 WILD-TYPE" "C8ORF37 WILD-TYPE" "C8ORF37 WILD-TYPE" "C8ORF37 WILD-TYPE" 
       TCGA-05-5429        TCGA-05-5715        TCGA-35-3615        TCGA-35-4122 
"C8ORF37 WILD-TYPE" "C8ORF37 WILD-TYPE" "C8ORF37 WILD-TYPE" "C8ORF37 WILD-TYPE" 
       TCGA-35-4123        TCGA-35-5375        TCGA-38-4625        TCGA-38-4626 
"C8ORF37 WILD-TYPE" "C8ORF37 WILD-TYPE" "C8ORF37 WILD-TYPE" "C8ORF37 WILD-TYPE" 
       TCGA-38-4627        TCGA-38-4628        TCGA-38-4629        TCGA-38-4630 
"C8ORF37 WILD-TYPE" "C8ORF37 WILD-TYPE" "C8ORF37 WILD-TYPE" "C8ORF37 WILD-TYPE" 
       TCGA-38-4631        TCGA-38-4632        TCGA-38-6178        TCGA-44-2655 
  "C8ORF37 MUTATED" "C8ORF37 WILD-TYPE" "C8ORF37 WILD-TYPE" "C8ORF37 WILD-TYPE" 
       TCGA-44-2656        TCGA-44-2657        TCGA-44-2659        TCGA-44-2661 
"C8ORF37 WILD-TYPE" "C8ORF37 WILD-TYPE" "C8ORF37 WILD-TYPE" "C8ORF37 WILD-TYPE" 
       TCGA-44-2662        TCGA-44-2665        TCGA-44-2666        TCGA-44-2668 
"C8ORF37 WILD-TYPE" "C8ORF37 WILD-TYPE" "C8ORF37 WILD-TYPE" "C8ORF37 WILD-TYPE" 
       TCGA-44-3396        TCGA-44-3398        TCGA-44-3918        TCGA-44-3919 
"C8ORF37 WILD-TYPE" "C8ORF37 WILD-TYPE" "C8ORF37 WILD-TYPE" "C8ORF37 WILD-TYPE" 
       TCGA-44-4112        TCGA-44-5643        TCGA-44-5645        TCGA-44-6144 
"C8ORF37 WILD-TYPE" "C8ORF37 WILD-TYPE" "C8ORF37 WILD-TYPE" "C8ORF37 WILD-TYPE" 
       TCGA-44-6145        TCGA-44-6146        TCGA-44-6147        TCGA-44-6148 
"C8ORF37 WILD-TYPE" "C8ORF37 WILD-TYPE" "C8ORF37 WILD-TYPE" "C8ORF37 WILD-TYPE" 
       TCGA-44-6774        TCGA-44-6775        TCGA-44-6776        TCGA-44-6777 
"C8ORF37 WILD-TYPE" "C8ORF37 WILD-TYPE" "C8ORF37 WILD-TYPE" "C8ORF37 WILD-TYPE" 
       TCGA-44-6778        TCGA-44-6779        TCGA-49-4486        TCGA-49-4487 
"C8ORF37 WILD-TYPE" "C8ORF37 WILD-TYPE" "C8ORF37 WILD-TYPE" "C8ORF37 WILD-TYPE" 
       TCGA-49-4488        TCGA-49-4490        TCGA-49-4494        TCGA-49-4501 
"C8ORF37 WILD-TYPE" "C8ORF37 WILD-TYPE" "C8ORF37 WILD-TYPE" "C8ORF37 WILD-TYPE" 
       TCGA-49-4505        TCGA-49-4506        TCGA-49-4507        TCGA-49-4510 
"C8ORF37 WILD-TYPE" "C8ORF37 WILD-TYPE" "C8ORF37 WILD-TYPE" "C8ORF37 WILD-TYPE" 
       TCGA-49-4512        TCGA-49-4514        TCGA-49-6742        TCGA-49-6743 
"C8ORF37 WILD-TYPE" "C8ORF37 WILD-TYPE" "C8ORF37 WILD-TYPE" "C8ORF37 WILD-TYPE" 
       TCGA-49-6744        TCGA-49-6745        TCGA-50-5044        TCGA-50-5045 
"C8ORF37 WILD-TYPE" "C8ORF37 WILD-TYPE" "C8ORF37 WILD-TYPE" "C8ORF37 WILD-TYPE" 
       TCGA-50-5049        TCGA-50-5051        TCGA-50-5055        TCGA-50-5066 
  "C8ORF37 MUTATED" "C8ORF37 WILD-TYPE" "C8ORF37 WILD-TYPE" "C8ORF37 WILD-TYPE" 
       TCGA-50-5068        TCGA-50-5072        TCGA-50-5930        TCGA-50-5931 
"C8ORF37 WILD-TYPE" "C8ORF37 WILD-TYPE" "C8ORF37 WILD-TYPE" "C8ORF37 WILD-TYPE" 
       TCGA-50-5932        TCGA-50-5933        TCGA-50-5935        TCGA-50-5936 
"C8ORF37 WILD-TYPE" "C8ORF37 WILD-TYPE" "C8ORF37 WILD-TYPE" "C8ORF37 WILD-TYPE" 
       TCGA-50-5939        TCGA-50-5941        TCGA-50-5942        TCGA-50-5944 
"C8ORF37 WILD-TYPE" "C8ORF37 WILD-TYPE" "C8ORF37 WILD-TYPE" "C8ORF37 WILD-TYPE" 
       TCGA-50-5946        TCGA-50-6590        TCGA-50-6591        TCGA-50-6592 
"C8ORF37 WILD-TYPE" "C8ORF37 WILD-TYPE" "C8ORF37 WILD-TYPE" "C8ORF37 WILD-TYPE" 
       TCGA-50-6593        TCGA-50-6594        TCGA-50-6595        TCGA-50-6597 
"C8ORF37 WILD-TYPE" "C8ORF37 WILD-TYPE" "C8ORF37 WILD-TYPE"   "C8ORF37 MUTATED" 
       TCGA-55-1592        TCGA-55-1594        TCGA-55-1595        TCGA-55-1596 
"C8ORF37 WILD-TYPE" "C8ORF37 WILD-TYPE" "C8ORF37 WILD-TYPE" "C8ORF37 WILD-TYPE" 
       TCGA-55-5899        TCGA-55-6543        TCGA-55-6642        TCGA-55-6712 
"C8ORF37 WILD-TYPE" "C8ORF37 WILD-TYPE" "C8ORF37 WILD-TYPE" "C8ORF37 WILD-TYPE" 
       TCGA-64-1676        TCGA-64-1677        TCGA-64-1678        TCGA-64-1680 
"C8ORF37 WILD-TYPE" "C8ORF37 WILD-TYPE" "C8ORF37 WILD-TYPE" "C8ORF37 WILD-TYPE" 
       TCGA-64-5774        TCGA-64-5775        TCGA-64-5778        TCGA-64-5779 
"C8ORF37 WILD-TYPE" "C8ORF37 WILD-TYPE" "C8ORF37 WILD-TYPE" "C8ORF37 WILD-TYPE" 
       TCGA-64-5781        TCGA-64-5815        TCGA-67-3770        TCGA-67-3771 
"C8ORF37 WILD-TYPE" "C8ORF37 WILD-TYPE" "C8ORF37 WILD-TYPE" "C8ORF37 WILD-TYPE" 
       TCGA-67-3772        TCGA-67-3773        TCGA-67-3774        TCGA-67-6215 
"C8ORF37 WILD-TYPE" "C8ORF37 WILD-TYPE" "C8ORF37 WILD-TYPE" "C8ORF37 WILD-TYPE" 
       TCGA-67-6216        TCGA-67-6217        TCGA-71-6725        TCGA-73-4658 
"C8ORF37 WILD-TYPE" "C8ORF37 WILD-TYPE" "C8ORF37 WILD-TYPE" "C8ORF37 WILD-TYPE" 
       TCGA-73-4659        TCGA-73-4662        TCGA-73-4666        TCGA-73-4668 
"C8ORF37 WILD-TYPE" "C8ORF37 WILD-TYPE" "C8ORF37 WILD-TYPE" "C8ORF37 WILD-TYPE" 
       TCGA-73-4670        TCGA-73-4675        TCGA-73-4676        TCGA-73-4677 
"C8ORF37 WILD-TYPE" "C8ORF37 WILD-TYPE" "C8ORF37 WILD-TYPE" "C8ORF37 WILD-TYPE" 
       TCGA-91-6828        TCGA-91-6829        TCGA-91-6831        TCGA-91-6835 
"C8ORF37 WILD-TYPE" "C8ORF37 WILD-TYPE" "C8ORF37 WILD-TYPE" "C8ORF37 WILD-TYPE" 
       TCGA-91-6836 
"C8ORF37 WILD-TYPE" 
       TCGA-05-4249        TCGA-05-4250        TCGA-05-4382        TCGA-05-4384 
"C8ORF37 WILD-TYPE" "C8ORF37 WILD-TYPE" "C8ORF37 WILD-TYPE" "C8ORF37 WILD-TYPE" 
       TCGA-05-4390        TCGA-05-4396        TCGA-05-4397        TCGA-05-4398 
"C8ORF37 WILD-TYPE"   "C8ORF37 MUTATED" "C8ORF37 WILD-TYPE" "C8ORF37 WILD-TYPE" 
       TCGA-05-4402        TCGA-05-4405        TCGA-05-4415        TCGA-05-4417 
"C8ORF37 WILD-TYPE" "C8ORF37 WILD-TYPE" "C8ORF37 WILD-TYPE" "C8ORF37 WILD-TYPE" 
       TCGA-05-4418        TCGA-05-4420        TCGA-05-4424        TCGA-05-4426 
"C8ORF37 WILD-TYPE" "C8ORF37 WILD-TYPE" "C8ORF37 WILD-TYPE" "C8ORF37 WILD-TYPE" 
       TCGA-05-4427        TCGA-05-4430        TCGA-05-4432        TCGA-05-4433 
  "C8ORF37 MUTATED" "C8ORF37 WILD-TYPE" "C8ORF37 WILD-TYPE" "C8ORF37 WILD-TYPE" 
       TCGA-05-4434        TCGA-05-5420        TCGA-05-5423        TCGA-05-5425 
"C8ORF37 WILD-TYPE" "C8ORF37 WILD-TYPE" "C8ORF37 WILD-TYPE" "C8ORF37 WILD-TYPE" 
       TCGA-05-5429        TCGA-05-5715        TCGA-35-3615        TCGA-35-4122 
"C8ORF37 WILD-TYPE" "C8ORF37 WILD-TYPE" "C8ORF37 WILD-TYPE" "C8ORF37 WILD-TYPE" 
       TCGA-35-4123        TCGA-35-5375        TCGA-38-4625        TCGA-38-4626 
"C8ORF37 WILD-TYPE" "C8ORF37 WILD-TYPE" "C8ORF37 WILD-TYPE" "C8ORF37 WILD-TYPE" 
       TCGA-38-4627        TCGA-38-4628        TCGA-38-4629        TCGA-38-4630 
"C8ORF37 WILD-TYPE" "C8ORF37 WILD-TYPE" "C8ORF37 WILD-TYPE" "C8ORF37 WILD-TYPE" 
       TCGA-38-4631        TCGA-38-4632        TCGA-38-6178        TCGA-44-2655 
  "C8ORF37 MUTATED" "C8ORF37 WILD-TYPE" "C8ORF37 WILD-TYPE" "C8ORF37 WILD-TYPE" 
       TCGA-44-2656        TCGA-44-2657        TCGA-44-2659        TCGA-44-2661 
"C8ORF37 WILD-TYPE" "C8ORF37 WILD-TYPE" "C8ORF37 WILD-TYPE" "C8ORF37 WILD-TYPE" 
       TCGA-44-2662        TCGA-44-2665        TCGA-44-2666        TCGA-44-2668 
"C8ORF37 WILD-TYPE" "C8ORF37 WILD-TYPE" "C8ORF37 WILD-TYPE" "C8ORF37 WILD-TYPE" 
       TCGA-44-3396        TCGA-44-3398        TCGA-44-3918        TCGA-44-3919 
"C8ORF37 WILD-TYPE" "C8ORF37 WILD-TYPE" "C8ORF37 WILD-TYPE" "C8ORF37 WILD-TYPE" 
       TCGA-44-4112        TCGA-44-5643        TCGA-44-5645        TCGA-44-6144 
"C8ORF37 WILD-TYPE" "C8ORF37 WILD-TYPE" "C8ORF37 WILD-TYPE" "C8ORF37 WILD-TYPE" 
       TCGA-44-6145        TCGA-44-6146        TCGA-44-6147        TCGA-44-6148 
"C8ORF37 WILD-TYPE" "C8ORF37 WILD-TYPE" "C8ORF37 WILD-TYPE" "C8ORF37 WILD-TYPE" 
       TCGA-44-6774        TCGA-44-6775        TCGA-44-6776        TCGA-44-6777 
"C8ORF37 WILD-TYPE" "C8ORF37 WILD-TYPE" "C8ORF37 WILD-TYPE" "C8ORF37 WILD-TYPE" 
       TCGA-44-6778        TCGA-44-6779        TCGA-49-4486        TCGA-49-4487 
"C8ORF37 WILD-TYPE" "C8ORF37 WILD-TYPE" "C8ORF37 WILD-TYPE" "C8ORF37 WILD-TYPE" 
       TCGA-49-4488        TCGA-49-4490        TCGA-49-4494        TCGA-49-4501 
"C8ORF37 WILD-TYPE" "C8ORF37 WILD-TYPE" "C8ORF37 WILD-TYPE" "C8ORF37 WILD-TYPE" 
       TCGA-49-4505        TCGA-49-4506        TCGA-49-4507        TCGA-49-4510 
"C8ORF37 WILD-TYPE" "C8ORF37 WILD-TYPE" "C8ORF37 WILD-TYPE" "C8ORF37 WILD-TYPE" 
       TCGA-49-4512        TCGA-49-4514        TCGA-49-6742        TCGA-49-6743 
"C8ORF37 WILD-TYPE" "C8ORF37 WILD-TYPE" "C8ORF37 WILD-TYPE" "C8ORF37 WILD-TYPE" 
       TCGA-49-6744        TCGA-49-6745        TCGA-50-5044        TCGA-50-5045 
"C8ORF37 WILD-TYPE" "C8ORF37 WILD-TYPE" "C8ORF37 WILD-TYPE" "C8ORF37 WILD-TYPE" 
       TCGA-50-5049        TCGA-50-5051        TCGA-50-5055        TCGA-50-5066 
  "C8ORF37 MUTATED" "C8ORF37 WILD-TYPE" "C8ORF37 WILD-TYPE" "C8ORF37 WILD-TYPE" 
       TCGA-50-5068        TCGA-50-5072        TCGA-50-5930        TCGA-50-5931 
"C8ORF37 WILD-TYPE" "C8ORF37 WILD-TYPE" "C8ORF37 WILD-TYPE" "C8ORF37 WILD-TYPE" 
       TCGA-50-5932        TCGA-50-5933        TCGA-50-5935        TCGA-50-5936 
"C8ORF37 WILD-TYPE" "C8ORF37 WILD-TYPE" "C8ORF37 WILD-TYPE" "C8ORF37 WILD-TYPE" 
       TCGA-50-5939        TCGA-50-5941        TCGA-50-5942        TCGA-50-5944 
"C8ORF37 WILD-TYPE" "C8ORF37 WILD-TYPE" "C8ORF37 WILD-TYPE" "C8ORF37 WILD-TYPE" 
       TCGA-50-5946        TCGA-50-6590        TCGA-50-6591        TCGA-50-6592 
"C8ORF37 WILD-TYPE" "C8ORF37 WILD-TYPE" "C8ORF37 WILD-TYPE" "C8ORF37 WILD-TYPE" 
       TCGA-50-6593        TCGA-50-6594        TCGA-50-6595        TCGA-50-6597 
"C8ORF37 WILD-TYPE" "C8ORF37 WILD-TYPE" "C8ORF37 WILD-TYPE"   "C8ORF37 MUTATED" 
       TCGA-55-1592        TCGA-55-1594        TCGA-55-1595        TCGA-55-1596 
"C8ORF37 WILD-TYPE" "C8ORF37 WILD-TYPE" "C8ORF37 WILD-TYPE" "C8ORF37 WILD-TYPE" 
       TCGA-55-5899        TCGA-55-6543        TCGA-55-6642        TCGA-55-6712 
"C8ORF37 WILD-TYPE" "C8ORF37 WILD-TYPE" "C8ORF37 WILD-TYPE" "C8ORF37 WILD-TYPE" 
       TCGA-64-1676        TCGA-64-1677        TCGA-64-1678        TCGA-64-1680 
"C8ORF37 WILD-TYPE" "C8ORF37 WILD-TYPE" "C8ORF37 WILD-TYPE" "C8ORF37 WILD-TYPE" 
       TCGA-64-5774        TCGA-64-5775        TCGA-64-5778        TCGA-64-5779 
"C8ORF37 WILD-TYPE" "C8ORF37 WILD-TYPE" "C8ORF37 WILD-TYPE" "C8ORF37 WILD-TYPE" 
       TCGA-64-5781        TCGA-64-5815        TCGA-67-3770        TCGA-67-3771 
"C8ORF37 WILD-TYPE" "C8ORF37 WILD-TYPE" "C8ORF37 WILD-TYPE" "C8ORF37 WILD-TYPE" 
       TCGA-67-3772        TCGA-67-3773        TCGA-67-3774        TCGA-67-6215 
"C8ORF37 WILD-TYPE" "C8ORF37 WILD-TYPE" "C8ORF37 WILD-TYPE" "C8ORF37 WILD-TYPE" 
       TCGA-67-6216        TCGA-67-6217        TCGA-71-6725        TCGA-73-4658 
"C8ORF37 WILD-TYPE" "C8ORF37 WILD-TYPE" "C8ORF37 WILD-TYPE" "C8ORF37 WILD-TYPE" 
       TCGA-73-4659        TCGA-73-4662        TCGA-73-4666        TCGA-73-4668 
"C8ORF37 WILD-TYPE" "C8ORF37 WILD-TYPE" "C8ORF37 WILD-TYPE" "C8ORF37 WILD-TYPE" 
       TCGA-73-4670        TCGA-73-4675        TCGA-73-4676        TCGA-73-4677 
"C8ORF37 WILD-TYPE" "C8ORF37 WILD-TYPE" "C8ORF37 WILD-TYPE" "C8ORF37 WILD-TYPE" 
       TCGA-91-6828        TCGA-91-6829        TCGA-91-6831        TCGA-91-6835 
"C8ORF37 WILD-TYPE" "C8ORF37 WILD-TYPE" "C8ORF37 WILD-TYPE" "C8ORF37 WILD-TYPE" 
       TCGA-91-6836 
"C8ORF37 WILD-TYPE" 
       TCGA-05-4249        TCGA-05-4250        TCGA-05-4382        TCGA-05-4384 
"C8ORF37 WILD-TYPE" "C8ORF37 WILD-TYPE" "C8ORF37 WILD-TYPE" "C8ORF37 WILD-TYPE" 
       TCGA-05-4390        TCGA-05-4396        TCGA-05-4397        TCGA-05-4398 
"C8ORF37 WILD-TYPE"   "C8ORF37 MUTATED" "C8ORF37 WILD-TYPE" "C8ORF37 WILD-TYPE" 
       TCGA-05-4402        TCGA-05-4405        TCGA-05-4415        TCGA-05-4417 
"C8ORF37 WILD-TYPE" "C8ORF37 WILD-TYPE" "C8ORF37 WILD-TYPE" "C8ORF37 WILD-TYPE" 
       TCGA-05-4418        TCGA-05-4420        TCGA-05-4424        TCGA-05-4426 
"C8ORF37 WILD-TYPE" "C8ORF37 WILD-TYPE" "C8ORF37 WILD-TYPE" "C8ORF37 WILD-TYPE" 
       TCGA-05-4427        TCGA-05-4430        TCGA-05-4432        TCGA-05-4433 
  "C8ORF37 MUTATED" "C8ORF37 WILD-TYPE" "C8ORF37 WILD-TYPE" "C8ORF37 WILD-TYPE" 
       TCGA-05-4434        TCGA-05-5420        TCGA-05-5423        TCGA-05-5425 
"C8ORF37 WILD-TYPE" "C8ORF37 WILD-TYPE" "C8ORF37 WILD-TYPE" "C8ORF37 WILD-TYPE" 
       TCGA-05-5429        TCGA-05-5715        TCGA-35-3615        TCGA-35-4122 
"C8ORF37 WILD-TYPE" "C8ORF37 WILD-TYPE" "C8ORF37 WILD-TYPE" "C8ORF37 WILD-TYPE" 
       TCGA-35-4123        TCGA-35-5375        TCGA-38-4625        TCGA-38-4626 
"C8ORF37 WILD-TYPE" "C8ORF37 WILD-TYPE" "C8ORF37 WILD-TYPE" "C8ORF37 WILD-TYPE" 
       TCGA-38-4627        TCGA-38-4628        TCGA-38-4629        TCGA-38-4630 
"C8ORF37 WILD-TYPE" "C8ORF37 WILD-TYPE" "C8ORF37 WILD-TYPE" "C8ORF37 WILD-TYPE" 
       TCGA-38-4631        TCGA-38-4632        TCGA-38-6178        TCGA-44-2655 
  "C8ORF37 MUTATED" "C8ORF37 WILD-TYPE" "C8ORF37 WILD-TYPE" "C8ORF37 WILD-TYPE" 
       TCGA-44-2656        TCGA-44-2657        TCGA-44-2659        TCGA-44-2661 
"C8ORF37 WILD-TYPE" "C8ORF37 WILD-TYPE" "C8ORF37 WILD-TYPE" "C8ORF37 WILD-TYPE" 
       TCGA-44-2662        TCGA-44-2665        TCGA-44-2666        TCGA-44-2668 
"C8ORF37 WILD-TYPE" "C8ORF37 WILD-TYPE" "C8ORF37 WILD-TYPE" "C8ORF37 WILD-TYPE" 
       TCGA-44-3396        TCGA-44-3398        TCGA-44-3918        TCGA-44-3919 
"C8ORF37 WILD-TYPE" "C8ORF37 WILD-TYPE" "C8ORF37 WILD-TYPE" "C8ORF37 WILD-TYPE" 
       TCGA-44-4112        TCGA-44-5643        TCGA-44-5645        TCGA-44-6144 
"C8ORF37 WILD-TYPE" "C8ORF37 WILD-TYPE" "C8ORF37 WILD-TYPE" "C8ORF37 WILD-TYPE" 
       TCGA-44-6145        TCGA-44-6146        TCGA-44-6147        TCGA-44-6148 
"C8ORF37 WILD-TYPE" "C8ORF37 WILD-TYPE" "C8ORF37 WILD-TYPE" "C8ORF37 WILD-TYPE" 
       TCGA-44-6774        TCGA-44-6775        TCGA-44-6776        TCGA-44-6777 
"C8ORF37 WILD-TYPE" "C8ORF37 WILD-TYPE" "C8ORF37 WILD-TYPE" "C8ORF37 WILD-TYPE" 
       TCGA-44-6778        TCGA-44-6779        TCGA-49-4486        TCGA-49-4487 
"C8ORF37 WILD-TYPE" "C8ORF37 WILD-TYPE" "C8ORF37 WILD-TYPE" "C8ORF37 WILD-TYPE" 
       TCGA-49-4488        TCGA-49-4490        TCGA-49-4494        TCGA-49-4501 
"C8ORF37 WILD-TYPE" "C8ORF37 WILD-TYPE" "C8ORF37 WILD-TYPE" "C8ORF37 WILD-TYPE" 
       TCGA-49-4505        TCGA-49-4506        TCGA-49-4507        TCGA-49-4510 
"C8ORF37 WILD-TYPE" "C8ORF37 WILD-TYPE" "C8ORF37 WILD-TYPE" "C8ORF37 WILD-TYPE" 
       TCGA-49-4512        TCGA-49-4514        TCGA-49-6742        TCGA-49-6743 
"C8ORF37 WILD-TYPE" "C8ORF37 WILD-TYPE" "C8ORF37 WILD-TYPE" "C8ORF37 WILD-TYPE" 
       TCGA-49-6744        TCGA-49-6745        TCGA-50-5044        TCGA-50-5045 
"C8ORF37 WILD-TYPE" "C8ORF37 WILD-TYPE" "C8ORF37 WILD-TYPE" "C8ORF37 WILD-TYPE" 
       TCGA-50-5049        TCGA-50-5051        TCGA-50-5055        TCGA-50-5066 
  "C8ORF37 MUTATED" "C8ORF37 WILD-TYPE" "C8ORF37 WILD-TYPE" "C8ORF37 WILD-TYPE" 
       TCGA-50-5068        TCGA-50-5072        TCGA-50-5930        TCGA-50-5931 
"C8ORF37 WILD-TYPE" "C8ORF37 WILD-TYPE" "C8ORF37 WILD-TYPE" "C8ORF37 WILD-TYPE" 
       TCGA-50-5932        TCGA-50-5933        TCGA-50-5935        TCGA-50-5936 
"C8ORF37 WILD-TYPE" "C8ORF37 WILD-TYPE" "C8ORF37 WILD-TYPE" "C8ORF37 WILD-TYPE" 
       TCGA-50-5939        TCGA-50-5941        TCGA-50-5942        TCGA-50-5944 
"C8ORF37 WILD-TYPE" "C8ORF37 WILD-TYPE" "C8ORF37 WILD-TYPE" "C8ORF37 WILD-TYPE" 
       TCGA-50-5946        TCGA-50-6590        TCGA-50-6591        TCGA-50-6592 
"C8ORF37 WILD-TYPE" "C8ORF37 WILD-TYPE" "C8ORF37 WILD-TYPE" "C8ORF37 WILD-TYPE" 
       TCGA-50-6593        TCGA-50-6594        TCGA-50-6595        TCGA-50-6597 
"C8ORF37 WILD-TYPE" "C8ORF37 WILD-TYPE" "C8ORF37 WILD-TYPE"   "C8ORF37 MUTATED" 
       TCGA-55-1592        TCGA-55-1594        TCGA-55-1595        TCGA-55-1596 
"C8ORF37 WILD-TYPE" "C8ORF37 WILD-TYPE" "C8ORF37 WILD-TYPE" "C8ORF37 WILD-TYPE" 
       TCGA-55-5899        TCGA-55-6543        TCGA-55-6642        TCGA-55-6712 
"C8ORF37 WILD-TYPE" "C8ORF37 WILD-TYPE" "C8ORF37 WILD-TYPE" "C8ORF37 WILD-TYPE" 
       TCGA-64-1676        TCGA-64-1677        TCGA-64-1678        TCGA-64-1680 
"C8ORF37 WILD-TYPE" "C8ORF37 WILD-TYPE" "C8ORF37 WILD-TYPE" "C8ORF37 WILD-TYPE" 
       TCGA-64-5774        TCGA-64-5775        TCGA-64-5778        TCGA-64-5779 
"C8ORF37 WILD-TYPE" "C8ORF37 WILD-TYPE" "C8ORF37 WILD-TYPE" "C8ORF37 WILD-TYPE" 
       TCGA-64-5781        TCGA-64-5815        TCGA-67-3770        TCGA-67-3771 
"C8ORF37 WILD-TYPE" "C8ORF37 WILD-TYPE" "C8ORF37 WILD-TYPE" "C8ORF37 WILD-TYPE" 
       TCGA-67-3772        TCGA-67-3773        TCGA-67-3774        TCGA-67-6215 
"C8ORF37 WILD-TYPE" "C8ORF37 WILD-TYPE" "C8ORF37 WILD-TYPE" "C8ORF37 WILD-TYPE" 
       TCGA-67-6216        TCGA-67-6217        TCGA-71-6725        TCGA-73-4658 
"C8ORF37 WILD-TYPE" "C8ORF37 WILD-TYPE" "C8ORF37 WILD-TYPE" "C8ORF37 WILD-TYPE" 
       TCGA-73-4659        TCGA-73-4662        TCGA-73-4666        TCGA-73-4668 
"C8ORF37 WILD-TYPE" "C8ORF37 WILD-TYPE" "C8ORF37 WILD-TYPE" "C8ORF37 WILD-TYPE" 
       TCGA-73-4670        TCGA-73-4675        TCGA-73-4676        TCGA-73-4677 
"C8ORF37 WILD-TYPE" "C8ORF37 WILD-TYPE" "C8ORF37 WILD-TYPE" "C8ORF37 WILD-TYPE" 
       TCGA-91-6828        TCGA-91-6829        TCGA-91-6831        TCGA-91-6835 
"C8ORF37 WILD-TYPE" "C8ORF37 WILD-TYPE" "C8ORF37 WILD-TYPE" "C8ORF37 WILD-TYPE" 
       TCGA-91-6836 
"C8ORF37 WILD-TYPE" 
[1] "hr=" "1.1"
D211V2, continuous
D211V3, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  C8ORF37 MUTATED      3    3
  C8ORF37 WILD-TYPE   90   76
        clus
vv       C8ORF37 MUTATED C8ORF37 WILD-TYPE
  FEMALE               3                90
  MALE                 3                76
D211V4, continuous
D211V5, multiclass
D211V6, multiclass
    clus
vv   C8ORF37 MUTATED C8ORF37 WILD-TYPE
  T1               0                41
  T2               5               103
  T3               0                14
  T4               1                 7
D211V7, multiclass
       clus
vv      C8ORF37 MUTATED C8ORF37 WILD-TYPE
  N0                  4                91
  N1                  2                35
  N2+N3               0                35
D211V8, multiclass
    clus
vv   C8ORF37 MUTATED C8ORF37 WILD-TYPE
  M0               6               131
  M1               0                 9
  MX               0                22
D211V9, multiclass
     clus
vv    C8ORF37 MUTATED C8ORF37 WILD-TYPE
  I                 4                84
  II                1                32
  III               1                38
  IV                0                 9
D211V10, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  C8ORF37 MUTATED      1    5
  C8ORF37 WILD-TYPE   15  151
     clus
vv    C8ORF37 MUTATED C8ORF37 WILD-TYPE
  NO                1                15
  YES               5               151
D211V11, continuous
D211V12, continuous
D211V13, multiclass
                                             clus
vv                                            C8ORF37 MUTATED C8ORF37 WILD-TYPE
  CURRENT REFORMED SMOKER FOR < OR = 15 YEARS               3                59
  CURRENT REFORMED SMOKER FOR > 15 YEARS                    1                45
  CURRENT SMOKER                                            0                28
  LIFELONG NON-SMOKER                                       1                23
D211V14, continuous

Clustering(212) Variable = TINAG MUTATION ANALYSIS
D212V1, survival
                 sevent
clus2              0  1
  TINAG MUTATED    2  1
  TINAG WILD-TYPE 97 49
  TINAG MUTATED TINAG WILD-TYPE 
              3             146 
  TINAG MUTATED TINAG WILD-TYPE 
              1              49 
$`TINAG MUTATED`
TCGA-05-4249 TCGA-05-4432 TCGA-50-5936 
       38.07        25.02         8.45 

$`TINAG WILD-TYPE`
TCGA-05-4250 TCGA-05-4382 TCGA-05-4384 TCGA-05-4390 TCGA-05-4396 TCGA-05-4397 
        3.98        19.92        14.01        37.02         9.96        24.03 
TCGA-05-4398 TCGA-05-4402 TCGA-05-4405 TCGA-05-4415 TCGA-05-4417 TCGA-05-4418 
       47.05         8.02        20.05         2.96        14.93         8.98 
TCGA-05-4420 TCGA-05-4424 TCGA-05-4426 TCGA-05-4427 TCGA-05-4430 TCGA-05-4433 
       29.95        30.02        26.01        26.01        25.02        24.00 
TCGA-05-4434 TCGA-05-5420 TCGA-05-5423 TCGA-05-5425 TCGA-05-5429 TCGA-05-5715 
       15.02         1.02         4.96         2.96         0.99         2.04 
TCGA-35-3615 TCGA-35-4122 TCGA-35-4123 TCGA-35-5375 TCGA-38-4625 TCGA-38-4626 
        0.46         7.36         5.95         8.68        47.61        85.32 
TCGA-38-4627 TCGA-38-4628 TCGA-38-4629 TCGA-38-4630 TCGA-38-4631 TCGA-38-4632 
       37.71        49.02        28.37        35.28        11.64        44.61 
TCGA-38-6178 TCGA-44-2655 TCGA-44-2656 TCGA-44-2657 TCGA-44-2659 TCGA-44-2661 
        5.19        18.87        19.10        13.15        17.39         3.39 
TCGA-44-2662 TCGA-44-2665 TCGA-44-2666 TCGA-44-2668 TCGA-44-3396 TCGA-44-3398 
       15.78        13.15         3.19         8.09        10.22         8.32 
TCGA-44-3918 TCGA-44-3919 TCGA-44-4112 TCGA-44-5643 TCGA-44-5645 TCGA-44-6144 
        6.44         6.21         4.60         3.48         6.84         0.30 
TCGA-44-6145 TCGA-44-6146 TCGA-44-6147 TCGA-44-6148 TCGA-44-6774 TCGA-44-6775 
        3.35         9.93         7.76         3.12         5.42         2.70 
TCGA-44-6776 TCGA-44-6777 TCGA-44-6778 TCGA-44-6779 TCGA-49-4486 TCGA-49-4487 
       63.72        32.45        36.49        16.41        76.21        28.11 
TCGA-49-4488 TCGA-49-4490 TCGA-49-4494 TCGA-49-4501 TCGA-49-4505 TCGA-49-4506 
       28.57        12.66        35.54        46.72        14.07        32.84 
TCGA-49-4507 TCGA-49-4510 TCGA-49-4512 TCGA-49-4514 TCGA-49-6742 TCGA-49-6743 
        8.81        29.46        29.75        43.20        15.02        12.13 
TCGA-49-6744 TCGA-49-6745 TCGA-50-5044 TCGA-50-5045 TCGA-50-5049 TCGA-50-5051 
       12.99         4.93        20.48        71.47        48.82        14.96 
TCGA-50-5055 TCGA-50-5066 TCGA-50-5068 TCGA-50-5072 TCGA-50-5930 TCGA-50-5931 
       25.81         9.76        49.28         8.05         9.27         8.78 
TCGA-50-5932 TCGA-50-5933 TCGA-50-5935 TCGA-50-5939 TCGA-50-5941 TCGA-50-5942 
       35.87        77.88        21.47        15.12         9.37         4.44 
TCGA-50-5944 TCGA-50-5946 TCGA-50-6590 TCGA-50-6591 TCGA-50-6592 TCGA-50-6593 
       12.26        11.47        42.31         3.88        25.51        11.05 
TCGA-50-6594 TCGA-50-6595 TCGA-50-6597 TCGA-55-1592 TCGA-55-1594 TCGA-55-1595 
       12.16         6.21        33.37        23.05        38.73        48.62 
TCGA-55-1596 TCGA-55-5899 TCGA-55-6543 TCGA-55-6642 TCGA-55-6712 TCGA-64-1676 
       45.17         2.86         0.07        32.61         0.79        56.81 
TCGA-64-1677 TCGA-64-1678 TCGA-64-1680 TCGA-64-5774 TCGA-64-5775 TCGA-64-5778 
       20.65        39.09        37.02        83.84         0.10        30.44 
TCGA-64-5779 TCGA-64-5781 TCGA-64-5815 TCGA-67-3770 TCGA-67-3771 TCGA-67-3772 
       16.67        39.52         7.33         0.99         1.97         0.59 
TCGA-67-3773 TCGA-67-3774 TCGA-67-6215 TCGA-67-6216 TCGA-67-6217 TCGA-71-6725 
        2.04         0.59         0.89         0.69        13.87         2.01 
TCGA-73-4658 TCGA-73-4659 TCGA-73-4662 TCGA-73-4666 TCGA-73-4668 TCGA-73-4670 
       52.57        23.38        29.95        20.28        15.35         0.46 
TCGA-73-4675 TCGA-73-4676 TCGA-73-4677 TCGA-91-6828 TCGA-91-6829 TCGA-91-6831 
        1.32         4.01         1.25         1.22        41.33         1.28 
TCGA-91-6835 TCGA-91-6836 
        1.15         0.36 

  TINAG MUTATED TINAG WILD-TYPE 
           8.45            0.07 
  TINAG MUTATED TINAG WILD-TYPE 
          38.07           85.32 
  TINAG MUTATED TINAG WILD-TYPE 
          25.02           13.51 
[1] "8.4 - 38.1 (25.0)" "0.1 - 85.3 (13.5)"
     TCGA-05-4249      TCGA-05-4250      TCGA-05-4382      TCGA-05-4384 
  "TINAG MUTATED" "TINAG WILD-TYPE" "TINAG WILD-TYPE" "TINAG WILD-TYPE" 
     TCGA-05-4390      TCGA-05-4396      TCGA-05-4397      TCGA-05-4398 
"TINAG WILD-TYPE" "TINAG WILD-TYPE" "TINAG WILD-TYPE" "TINAG WILD-TYPE" 
     TCGA-05-4402      TCGA-05-4405      TCGA-05-4415      TCGA-05-4417 
"TINAG WILD-TYPE" "TINAG WILD-TYPE" "TINAG WILD-TYPE" "TINAG WILD-TYPE" 
     TCGA-05-4418      TCGA-05-4420      TCGA-05-4424      TCGA-05-4426 
"TINAG WILD-TYPE" "TINAG WILD-TYPE" "TINAG WILD-TYPE" "TINAG WILD-TYPE" 
     TCGA-05-4427      TCGA-05-4430      TCGA-05-4432      TCGA-05-4433 
"TINAG WILD-TYPE" "TINAG WILD-TYPE"   "TINAG MUTATED" "TINAG WILD-TYPE" 
     TCGA-05-4434      TCGA-05-5420      TCGA-05-5423      TCGA-05-5425 
"TINAG WILD-TYPE" "TINAG WILD-TYPE" "TINAG WILD-TYPE" "TINAG WILD-TYPE" 
     TCGA-05-5429      TCGA-05-5715      TCGA-35-3615      TCGA-35-4122 
"TINAG WILD-TYPE" "TINAG WILD-TYPE" "TINAG WILD-TYPE" "TINAG WILD-TYPE" 
     TCGA-35-4123      TCGA-35-5375      TCGA-38-4625      TCGA-38-4626 
"TINAG WILD-TYPE" "TINAG WILD-TYPE" "TINAG WILD-TYPE" "TINAG WILD-TYPE" 
     TCGA-38-4627      TCGA-38-4628      TCGA-38-4629      TCGA-38-4630 
"TINAG WILD-TYPE" "TINAG WILD-TYPE" "TINAG WILD-TYPE" "TINAG WILD-TYPE" 
     TCGA-38-4631      TCGA-38-4632      TCGA-38-6178      TCGA-44-2655 
"TINAG WILD-TYPE" "TINAG WILD-TYPE" "TINAG WILD-TYPE" "TINAG WILD-TYPE" 
     TCGA-44-2656      TCGA-44-2657      TCGA-44-2659      TCGA-44-2661 
"TINAG WILD-TYPE" "TINAG WILD-TYPE" "TINAG WILD-TYPE" "TINAG WILD-TYPE" 
     TCGA-44-2662      TCGA-44-2665      TCGA-44-2666      TCGA-44-2668 
"TINAG WILD-TYPE" "TINAG WILD-TYPE" "TINAG WILD-TYPE" "TINAG WILD-TYPE" 
     TCGA-44-3396      TCGA-44-3398      TCGA-44-3918      TCGA-44-3919 
"TINAG WILD-TYPE" "TINAG WILD-TYPE" "TINAG WILD-TYPE" "TINAG WILD-TYPE" 
     TCGA-44-4112      TCGA-44-5643      TCGA-44-5645      TCGA-44-6144 
"TINAG WILD-TYPE" "TINAG WILD-TYPE" "TINAG WILD-TYPE" "TINAG WILD-TYPE" 
     TCGA-44-6145      TCGA-44-6146      TCGA-44-6147      TCGA-44-6148 
"TINAG WILD-TYPE" "TINAG WILD-TYPE" "TINAG WILD-TYPE" "TINAG WILD-TYPE" 
     TCGA-44-6774      TCGA-44-6775      TCGA-44-6776      TCGA-44-6777 
"TINAG WILD-TYPE" "TINAG WILD-TYPE" "TINAG WILD-TYPE" "TINAG WILD-TYPE" 
     TCGA-44-6778      TCGA-44-6779      TCGA-49-4486      TCGA-49-4487 
"TINAG WILD-TYPE" "TINAG WILD-TYPE" "TINAG WILD-TYPE" "TINAG WILD-TYPE" 
     TCGA-49-4488      TCGA-49-4490      TCGA-49-4494      TCGA-49-4501 
"TINAG WILD-TYPE" "TINAG WILD-TYPE" "TINAG WILD-TYPE" "TINAG WILD-TYPE" 
     TCGA-49-4505      TCGA-49-4506      TCGA-49-4507      TCGA-49-4510 
"TINAG WILD-TYPE" "TINAG WILD-TYPE" "TINAG WILD-TYPE" "TINAG WILD-TYPE" 
     TCGA-49-4512      TCGA-49-4514      TCGA-49-6742      TCGA-49-6743 
"TINAG WILD-TYPE" "TINAG WILD-TYPE" "TINAG WILD-TYPE" "TINAG WILD-TYPE" 
     TCGA-49-6744      TCGA-49-6745      TCGA-50-5044      TCGA-50-5045 
"TINAG WILD-TYPE" "TINAG WILD-TYPE" "TINAG WILD-TYPE" "TINAG WILD-TYPE" 
     TCGA-50-5049      TCGA-50-5051      TCGA-50-5055      TCGA-50-5066 
"TINAG WILD-TYPE" "TINAG WILD-TYPE" "TINAG WILD-TYPE" "TINAG WILD-TYPE" 
     TCGA-50-5068      TCGA-50-5072      TCGA-50-5930      TCGA-50-5931 
"TINAG WILD-TYPE" "TINAG WILD-TYPE" "TINAG WILD-TYPE" "TINAG WILD-TYPE" 
     TCGA-50-5932      TCGA-50-5933      TCGA-50-5935      TCGA-50-5936 
"TINAG WILD-TYPE" "TINAG WILD-TYPE" "TINAG WILD-TYPE"   "TINAG MUTATED" 
     TCGA-50-5939      TCGA-50-5941      TCGA-50-5942      TCGA-50-5944 
"TINAG WILD-TYPE" "TINAG WILD-TYPE" "TINAG WILD-TYPE" "TINAG WILD-TYPE" 
     TCGA-50-5946      TCGA-50-6590      TCGA-50-6591      TCGA-50-6592 
"TINAG WILD-TYPE" "TINAG WILD-TYPE" "TINAG WILD-TYPE" "TINAG WILD-TYPE" 
     TCGA-50-6593      TCGA-50-6594      TCGA-50-6595      TCGA-50-6597 
"TINAG WILD-TYPE" "TINAG WILD-TYPE" "TINAG WILD-TYPE" "TINAG WILD-TYPE" 
     TCGA-55-1592      TCGA-55-1594      TCGA-55-1595      TCGA-55-1596 
"TINAG WILD-TYPE" "TINAG WILD-TYPE" "TINAG WILD-TYPE" "TINAG WILD-TYPE" 
     TCGA-55-5899      TCGA-55-6543      TCGA-55-6642      TCGA-55-6712 
"TINAG WILD-TYPE" "TINAG WILD-TYPE" "TINAG WILD-TYPE" "TINAG WILD-TYPE" 
     TCGA-64-1676      TCGA-64-1677      TCGA-64-1678      TCGA-64-1680 
"TINAG WILD-TYPE" "TINAG WILD-TYPE" "TINAG WILD-TYPE" "TINAG WILD-TYPE" 
     TCGA-64-5774      TCGA-64-5775      TCGA-64-5778      TCGA-64-5779 
"TINAG WILD-TYPE" "TINAG WILD-TYPE" "TINAG WILD-TYPE" "TINAG WILD-TYPE" 
     TCGA-64-5781      TCGA-64-5815      TCGA-67-3770      TCGA-67-3771 
"TINAG WILD-TYPE" "TINAG WILD-TYPE" "TINAG WILD-TYPE" "TINAG WILD-TYPE" 
     TCGA-67-3772      TCGA-67-3773      TCGA-67-3774      TCGA-67-6215 
"TINAG WILD-TYPE" "TINAG WILD-TYPE" "TINAG WILD-TYPE" "TINAG WILD-TYPE" 
     TCGA-67-6216      TCGA-67-6217      TCGA-71-6725      TCGA-73-4658 
"TINAG WILD-TYPE" "TINAG WILD-TYPE" "TINAG WILD-TYPE" "TINAG WILD-TYPE" 
     TCGA-73-4659      TCGA-73-4662      TCGA-73-4666      TCGA-73-4668 
"TINAG WILD-TYPE" "TINAG WILD-TYPE" "TINAG WILD-TYPE" "TINAG WILD-TYPE" 
     TCGA-73-4670      TCGA-73-4675      TCGA-73-4676      TCGA-73-4677 
"TINAG WILD-TYPE" "TINAG WILD-TYPE" "TINAG WILD-TYPE" "TINAG WILD-TYPE" 
     TCGA-91-6828      TCGA-91-6829      TCGA-91-6831      TCGA-91-6835 
"TINAG WILD-TYPE" "TINAG WILD-TYPE" "TINAG WILD-TYPE" "TINAG WILD-TYPE" 
     TCGA-91-6836 
"TINAG WILD-TYPE" 
     TCGA-05-4249      TCGA-05-4250      TCGA-05-4382      TCGA-05-4384 
  "TINAG MUTATED" "TINAG WILD-TYPE" "TINAG WILD-TYPE" "TINAG WILD-TYPE" 
     TCGA-05-4390      TCGA-05-4396      TCGA-05-4397      TCGA-05-4398 
"TINAG WILD-TYPE" "TINAG WILD-TYPE" "TINAG WILD-TYPE" "TINAG WILD-TYPE" 
     TCGA-05-4402      TCGA-05-4405      TCGA-05-4415      TCGA-05-4417 
"TINAG WILD-TYPE" "TINAG WILD-TYPE" "TINAG WILD-TYPE" "TINAG WILD-TYPE" 
     TCGA-05-4418      TCGA-05-4420      TCGA-05-4424      TCGA-05-4426 
"TINAG WILD-TYPE" "TINAG WILD-TYPE" "TINAG WILD-TYPE" "TINAG WILD-TYPE" 
     TCGA-05-4427      TCGA-05-4430      TCGA-05-4432      TCGA-05-4433 
"TINAG WILD-TYPE" "TINAG WILD-TYPE"   "TINAG MUTATED" "TINAG WILD-TYPE" 
     TCGA-05-4434      TCGA-05-5420      TCGA-05-5423      TCGA-05-5425 
"TINAG WILD-TYPE" "TINAG WILD-TYPE" "TINAG WILD-TYPE" "TINAG WILD-TYPE" 
     TCGA-05-5429      TCGA-05-5715      TCGA-35-3615      TCGA-35-4122 
"TINAG WILD-TYPE" "TINAG WILD-TYPE" "TINAG WILD-TYPE" "TINAG WILD-TYPE" 
     TCGA-35-4123      TCGA-35-5375      TCGA-38-4625      TCGA-38-4626 
"TINAG WILD-TYPE" "TINAG WILD-TYPE" "TINAG WILD-TYPE" "TINAG WILD-TYPE" 
     TCGA-38-4627      TCGA-38-4628      TCGA-38-4629      TCGA-38-4630 
"TINAG WILD-TYPE" "TINAG WILD-TYPE" "TINAG WILD-TYPE" "TINAG WILD-TYPE" 
     TCGA-38-4631      TCGA-38-4632      TCGA-38-6178      TCGA-44-2655 
"TINAG WILD-TYPE" "TINAG WILD-TYPE" "TINAG WILD-TYPE" "TINAG WILD-TYPE" 
     TCGA-44-2656      TCGA-44-2657      TCGA-44-2659      TCGA-44-2661 
"TINAG WILD-TYPE" "TINAG WILD-TYPE" "TINAG WILD-TYPE" "TINAG WILD-TYPE" 
     TCGA-44-2662      TCGA-44-2665      TCGA-44-2666      TCGA-44-2668 
"TINAG WILD-TYPE" "TINAG WILD-TYPE" "TINAG WILD-TYPE" "TINAG WILD-TYPE" 
     TCGA-44-3396      TCGA-44-3398      TCGA-44-3918      TCGA-44-3919 
"TINAG WILD-TYPE" "TINAG WILD-TYPE" "TINAG WILD-TYPE" "TINAG WILD-TYPE" 
     TCGA-44-4112      TCGA-44-5643      TCGA-44-5645      TCGA-44-6144 
"TINAG WILD-TYPE" "TINAG WILD-TYPE" "TINAG WILD-TYPE" "TINAG WILD-TYPE" 
     TCGA-44-6145      TCGA-44-6146      TCGA-44-6147      TCGA-44-6148 
"TINAG WILD-TYPE" "TINAG WILD-TYPE" "TINAG WILD-TYPE" "TINAG WILD-TYPE" 
     TCGA-44-6774      TCGA-44-6775      TCGA-44-6776      TCGA-44-6777 
"TINAG WILD-TYPE" "TINAG WILD-TYPE" "TINAG WILD-TYPE" "TINAG WILD-TYPE" 
     TCGA-44-6778      TCGA-44-6779      TCGA-49-4486      TCGA-49-4487 
"TINAG WILD-TYPE" "TINAG WILD-TYPE" "TINAG WILD-TYPE" "TINAG WILD-TYPE" 
     TCGA-49-4488      TCGA-49-4490      TCGA-49-4494      TCGA-49-4501 
"TINAG WILD-TYPE" "TINAG WILD-TYPE" "TINAG WILD-TYPE" "TINAG WILD-TYPE" 
     TCGA-49-4505      TCGA-49-4506      TCGA-49-4507      TCGA-49-4510 
"TINAG WILD-TYPE" "TINAG WILD-TYPE" "TINAG WILD-TYPE" "TINAG WILD-TYPE" 
     TCGA-49-4512      TCGA-49-4514      TCGA-49-6742      TCGA-49-6743 
"TINAG WILD-TYPE" "TINAG WILD-TYPE" "TINAG WILD-TYPE" "TINAG WILD-TYPE" 
     TCGA-49-6744      TCGA-49-6745      TCGA-50-5044      TCGA-50-5045 
"TINAG WILD-TYPE" "TINAG WILD-TYPE" "TINAG WILD-TYPE" "TINAG WILD-TYPE" 
     TCGA-50-5049      TCGA-50-5051      TCGA-50-5055      TCGA-50-5066 
"TINAG WILD-TYPE" "TINAG WILD-TYPE" "TINAG WILD-TYPE" "TINAG WILD-TYPE" 
     TCGA-50-5068      TCGA-50-5072      TCGA-50-5930      TCGA-50-5931 
"TINAG WILD-TYPE" "TINAG WILD-TYPE" "TINAG WILD-TYPE" "TINAG WILD-TYPE" 
     TCGA-50-5932      TCGA-50-5933      TCGA-50-5935      TCGA-50-5936 
"TINAG WILD-TYPE" "TINAG WILD-TYPE" "TINAG WILD-TYPE"   "TINAG MUTATED" 
     TCGA-50-5939      TCGA-50-5941      TCGA-50-5942      TCGA-50-5944 
"TINAG WILD-TYPE" "TINAG WILD-TYPE" "TINAG WILD-TYPE" "TINAG WILD-TYPE" 
     TCGA-50-5946      TCGA-50-6590      TCGA-50-6591      TCGA-50-6592 
"TINAG WILD-TYPE" "TINAG WILD-TYPE" "TINAG WILD-TYPE" "TINAG WILD-TYPE" 
     TCGA-50-6593      TCGA-50-6594      TCGA-50-6595      TCGA-50-6597 
"TINAG WILD-TYPE" "TINAG WILD-TYPE" "TINAG WILD-TYPE" "TINAG WILD-TYPE" 
     TCGA-55-1592      TCGA-55-1594      TCGA-55-1595      TCGA-55-1596 
"TINAG WILD-TYPE" "TINAG WILD-TYPE" "TINAG WILD-TYPE" "TINAG WILD-TYPE" 
     TCGA-55-5899      TCGA-55-6543      TCGA-55-6642      TCGA-55-6712 
"TINAG WILD-TYPE" "TINAG WILD-TYPE" "TINAG WILD-TYPE" "TINAG WILD-TYPE" 
     TCGA-64-1676      TCGA-64-1677      TCGA-64-1678      TCGA-64-1680 
"TINAG WILD-TYPE" "TINAG WILD-TYPE" "TINAG WILD-TYPE" "TINAG WILD-TYPE" 
     TCGA-64-5774      TCGA-64-5775      TCGA-64-5778      TCGA-64-5779 
"TINAG WILD-TYPE" "TINAG WILD-TYPE" "TINAG WILD-TYPE" "TINAG WILD-TYPE" 
     TCGA-64-5781      TCGA-64-5815      TCGA-67-3770      TCGA-67-3771 
"TINAG WILD-TYPE" "TINAG WILD-TYPE" "TINAG WILD-TYPE" "TINAG WILD-TYPE" 
     TCGA-67-3772      TCGA-67-3773      TCGA-67-3774      TCGA-67-6215 
"TINAG WILD-TYPE" "TINAG WILD-TYPE" "TINAG WILD-TYPE" "TINAG WILD-TYPE" 
     TCGA-67-6216      TCGA-67-6217      TCGA-71-6725      TCGA-73-4658 
"TINAG WILD-TYPE" "TINAG WILD-TYPE" "TINAG WILD-TYPE" "TINAG WILD-TYPE" 
     TCGA-73-4659      TCGA-73-4662      TCGA-73-4666      TCGA-73-4668 
"TINAG WILD-TYPE" "TINAG WILD-TYPE" "TINAG WILD-TYPE" "TINAG WILD-TYPE" 
     TCGA-73-4670      TCGA-73-4675      TCGA-73-4676      TCGA-73-4677 
"TINAG WILD-TYPE" "TINAG WILD-TYPE" "TINAG WILD-TYPE" "TINAG WILD-TYPE" 
     TCGA-91-6828      TCGA-91-6829      TCGA-91-6831      TCGA-91-6835 
"TINAG WILD-TYPE" "TINAG WILD-TYPE" "TINAG WILD-TYPE" "TINAG WILD-TYPE" 
     TCGA-91-6836 
"TINAG WILD-TYPE" 
     TCGA-05-4249      TCGA-05-4250      TCGA-05-4382      TCGA-05-4384 
  "TINAG MUTATED" "TINAG WILD-TYPE" "TINAG WILD-TYPE" "TINAG WILD-TYPE" 
     TCGA-05-4390      TCGA-05-4396      TCGA-05-4397      TCGA-05-4398 
"TINAG WILD-TYPE" "TINAG WILD-TYPE" "TINAG WILD-TYPE" "TINAG WILD-TYPE" 
     TCGA-05-4402      TCGA-05-4405      TCGA-05-4415      TCGA-05-4417 
"TINAG WILD-TYPE" "TINAG WILD-TYPE" "TINAG WILD-TYPE" "TINAG WILD-TYPE" 
     TCGA-05-4418      TCGA-05-4420      TCGA-05-4424      TCGA-05-4426 
"TINAG WILD-TYPE" "TINAG WILD-TYPE" "TINAG WILD-TYPE" "TINAG WILD-TYPE" 
     TCGA-05-4427      TCGA-05-4430      TCGA-05-4432      TCGA-05-4433 
"TINAG WILD-TYPE" "TINAG WILD-TYPE"   "TINAG MUTATED" "TINAG WILD-TYPE" 
     TCGA-05-4434      TCGA-05-5420      TCGA-05-5423      TCGA-05-5425 
"TINAG WILD-TYPE" "TINAG WILD-TYPE" "TINAG WILD-TYPE" "TINAG WILD-TYPE" 
     TCGA-05-5429      TCGA-05-5715      TCGA-35-3615      TCGA-35-4122 
"TINAG WILD-TYPE" "TINAG WILD-TYPE" "TINAG WILD-TYPE" "TINAG WILD-TYPE" 
     TCGA-35-4123      TCGA-35-5375      TCGA-38-4625      TCGA-38-4626 
"TINAG WILD-TYPE" "TINAG WILD-TYPE" "TINAG WILD-TYPE" "TINAG WILD-TYPE" 
     TCGA-38-4627      TCGA-38-4628      TCGA-38-4629      TCGA-38-4630 
"TINAG WILD-TYPE" "TINAG WILD-TYPE" "TINAG WILD-TYPE" "TINAG WILD-TYPE" 
     TCGA-38-4631      TCGA-38-4632      TCGA-38-6178      TCGA-44-2655 
"TINAG WILD-TYPE" "TINAG WILD-TYPE" "TINAG WILD-TYPE" "TINAG WILD-TYPE" 
     TCGA-44-2656      TCGA-44-2657      TCGA-44-2659      TCGA-44-2661 
"TINAG WILD-TYPE" "TINAG WILD-TYPE" "TINAG WILD-TYPE" "TINAG WILD-TYPE" 
     TCGA-44-2662      TCGA-44-2665      TCGA-44-2666      TCGA-44-2668 
"TINAG WILD-TYPE" "TINAG WILD-TYPE" "TINAG WILD-TYPE" "TINAG WILD-TYPE" 
     TCGA-44-3396      TCGA-44-3398      TCGA-44-3918      TCGA-44-3919 
"TINAG WILD-TYPE" "TINAG WILD-TYPE" "TINAG WILD-TYPE" "TINAG WILD-TYPE" 
     TCGA-44-4112      TCGA-44-5643      TCGA-44-5645      TCGA-44-6144 
"TINAG WILD-TYPE" "TINAG WILD-TYPE" "TINAG WILD-TYPE" "TINAG WILD-TYPE" 
     TCGA-44-6145      TCGA-44-6146      TCGA-44-6147      TCGA-44-6148 
"TINAG WILD-TYPE" "TINAG WILD-TYPE" "TINAG WILD-TYPE" "TINAG WILD-TYPE" 
     TCGA-44-6774      TCGA-44-6775      TCGA-44-6776      TCGA-44-6777 
"TINAG WILD-TYPE" "TINAG WILD-TYPE" "TINAG WILD-TYPE" "TINAG WILD-TYPE" 
     TCGA-44-6778      TCGA-44-6779      TCGA-49-4486      TCGA-49-4487 
"TINAG WILD-TYPE" "TINAG WILD-TYPE" "TINAG WILD-TYPE" "TINAG WILD-TYPE" 
     TCGA-49-4488      TCGA-49-4490      TCGA-49-4494      TCGA-49-4501 
"TINAG WILD-TYPE" "TINAG WILD-TYPE" "TINAG WILD-TYPE" "TINAG WILD-TYPE" 
     TCGA-49-4505      TCGA-49-4506      TCGA-49-4507      TCGA-49-4510 
"TINAG WILD-TYPE" "TINAG WILD-TYPE" "TINAG WILD-TYPE" "TINAG WILD-TYPE" 
     TCGA-49-4512      TCGA-49-4514      TCGA-49-6742      TCGA-49-6743 
"TINAG WILD-TYPE" "TINAG WILD-TYPE" "TINAG WILD-TYPE" "TINAG WILD-TYPE" 
     TCGA-49-6744      TCGA-49-6745      TCGA-50-5044      TCGA-50-5045 
"TINAG WILD-TYPE" "TINAG WILD-TYPE" "TINAG WILD-TYPE" "TINAG WILD-TYPE" 
     TCGA-50-5049      TCGA-50-5051      TCGA-50-5055      TCGA-50-5066 
"TINAG WILD-TYPE" "TINAG WILD-TYPE" "TINAG WILD-TYPE" "TINAG WILD-TYPE" 
     TCGA-50-5068      TCGA-50-5072      TCGA-50-5930      TCGA-50-5931 
"TINAG WILD-TYPE" "TINAG WILD-TYPE" "TINAG WILD-TYPE" "TINAG WILD-TYPE" 
     TCGA-50-5932      TCGA-50-5933      TCGA-50-5935      TCGA-50-5936 
"TINAG WILD-TYPE" "TINAG WILD-TYPE" "TINAG WILD-TYPE"   "TINAG MUTATED" 
     TCGA-50-5939      TCGA-50-5941      TCGA-50-5942      TCGA-50-5944 
"TINAG WILD-TYPE" "TINAG WILD-TYPE" "TINAG WILD-TYPE" "TINAG WILD-TYPE" 
     TCGA-50-5946      TCGA-50-6590      TCGA-50-6591      TCGA-50-6592 
"TINAG WILD-TYPE" "TINAG WILD-TYPE" "TINAG WILD-TYPE" "TINAG WILD-TYPE" 
     TCGA-50-6593      TCGA-50-6594      TCGA-50-6595      TCGA-50-6597 
"TINAG WILD-TYPE" "TINAG WILD-TYPE" "TINAG WILD-TYPE" "TINAG WILD-TYPE" 
     TCGA-55-1592      TCGA-55-1594      TCGA-55-1595      TCGA-55-1596 
"TINAG WILD-TYPE" "TINAG WILD-TYPE" "TINAG WILD-TYPE" "TINAG WILD-TYPE" 
     TCGA-55-5899      TCGA-55-6543      TCGA-55-6642      TCGA-55-6712 
"TINAG WILD-TYPE" "TINAG WILD-TYPE" "TINAG WILD-TYPE" "TINAG WILD-TYPE" 
     TCGA-64-1676      TCGA-64-1677      TCGA-64-1678      TCGA-64-1680 
"TINAG WILD-TYPE" "TINAG WILD-TYPE" "TINAG WILD-TYPE" "TINAG WILD-TYPE" 
     TCGA-64-5774      TCGA-64-5775      TCGA-64-5778      TCGA-64-5779 
"TINAG WILD-TYPE" "TINAG WILD-TYPE" "TINAG WILD-TYPE" "TINAG WILD-TYPE" 
     TCGA-64-5781      TCGA-64-5815      TCGA-67-3770      TCGA-67-3771 
"TINAG WILD-TYPE" "TINAG WILD-TYPE" "TINAG WILD-TYPE" "TINAG WILD-TYPE" 
     TCGA-67-3772      TCGA-67-3773      TCGA-67-3774      TCGA-67-6215 
"TINAG WILD-TYPE" "TINAG WILD-TYPE" "TINAG WILD-TYPE" "TINAG WILD-TYPE" 
     TCGA-67-6216      TCGA-67-6217      TCGA-71-6725      TCGA-73-4658 
"TINAG WILD-TYPE" "TINAG WILD-TYPE" "TINAG WILD-TYPE" "TINAG WILD-TYPE" 
     TCGA-73-4659      TCGA-73-4662      TCGA-73-4666      TCGA-73-4668 
"TINAG WILD-TYPE" "TINAG WILD-TYPE" "TINAG WILD-TYPE" "TINAG WILD-TYPE" 
     TCGA-73-4670      TCGA-73-4675      TCGA-73-4676      TCGA-73-4677 
"TINAG WILD-TYPE" "TINAG WILD-TYPE" "TINAG WILD-TYPE" "TINAG WILD-TYPE" 
     TCGA-91-6828      TCGA-91-6829      TCGA-91-6831      TCGA-91-6835 
"TINAG WILD-TYPE" "TINAG WILD-TYPE" "TINAG WILD-TYPE" "TINAG WILD-TYPE" 
     TCGA-91-6836 
"TINAG WILD-TYPE" 
[1] "hr=" "1.1"
D212V2, continuous
D212V3, binary
[1] "tbl2"
                 cls
clus              [,1] [,2]
  TINAG MUTATED      1    3
  TINAG WILD-TYPE   92   76
        clus
vv       TINAG MUTATED TINAG WILD-TYPE
  FEMALE             1              92
  MALE               3              76
D212V4, continuous
D212V5, multiclass
D212V6, multiclass
    clus
vv   TINAG MUTATED TINAG WILD-TYPE
  T1             0              41
  T2             3             105
  T3             1              13
  T4             0               8
D212V7, multiclass
       clus
vv      TINAG MUTATED TINAG WILD-TYPE
  N0                2              93
  N1                1              36
  N2+N3             1              34
D212V8, multiclass
    clus
vv   TINAG MUTATED TINAG WILD-TYPE
  M0             3             134
  M1             0               9
  MX             1              21
D212V9, multiclass
     clus
vv    TINAG MUTATED TINAG WILD-TYPE
  I               1              87
  II              2              31
  III             1              38
  IV              0               9
D212V10, binary
[1] "tbl2"
                 cls
clus              [,1] [,2]
  TINAG MUTATED      0    4
  TINAG WILD-TYPE   16  152
     clus
vv    TINAG MUTATED TINAG WILD-TYPE
  NO              0              16
  YES             4             152
D212V11, continuous
D212V12, continuous
D212V13, multiclass
                                             clus
vv                                            TINAG MUTATED TINAG WILD-TYPE
  CURRENT REFORMED SMOKER FOR < OR = 15 YEARS             0              62
  CURRENT REFORMED SMOKER FOR > 15 YEARS                  1              45
  CURRENT SMOKER                                          2              26
  LIFELONG NON-SMOKER                                     0              24
D212V14, continuous

Clustering(213) Variable = WDR64 MUTATION ANALYSIS
D213V1, survival
                 sevent
clus2              0  1
  WDR64 MUTATED    6  1
  WDR64 WILD-TYPE 93 49
  WDR64 MUTATED WDR64 WILD-TYPE 
              7             142 
  WDR64 MUTATED WDR64 WILD-TYPE 
              1              49 
$`WDR64 MUTATED`
TCGA-05-4396 TCGA-49-6743 TCGA-49-6744 TCGA-64-5779 TCGA-67-3771 TCGA-73-4675 
        9.96        12.13        12.99        16.67         1.97         1.32 
TCGA-91-6831 
        1.28 

$`WDR64 WILD-TYPE`
TCGA-05-4249 TCGA-05-4250 TCGA-05-4382 TCGA-05-4384 TCGA-05-4390 TCGA-05-4397 
       38.07         3.98        19.92        14.01        37.02        24.03 
TCGA-05-4398 TCGA-05-4402 TCGA-05-4405 TCGA-05-4415 TCGA-05-4417 TCGA-05-4418 
       47.05         8.02        20.05         2.96        14.93         8.98 
TCGA-05-4420 TCGA-05-4424 TCGA-05-4426 TCGA-05-4427 TCGA-05-4430 TCGA-05-4432 
       29.95        30.02        26.01        26.01        25.02        25.02 
TCGA-05-4433 TCGA-05-4434 TCGA-05-5420 TCGA-05-5423 TCGA-05-5425 TCGA-05-5429 
       24.00        15.02         1.02         4.96         2.96         0.99 
TCGA-05-5715 TCGA-35-3615 TCGA-35-4122 TCGA-35-4123 TCGA-35-5375 TCGA-38-4625 
        2.04         0.46         7.36         5.95         8.68        47.61 
TCGA-38-4626 TCGA-38-4627 TCGA-38-4628 TCGA-38-4629 TCGA-38-4630 TCGA-38-4631 
       85.32        37.71        49.02        28.37        35.28        11.64 
TCGA-38-4632 TCGA-38-6178 TCGA-44-2655 TCGA-44-2656 TCGA-44-2657 TCGA-44-2659 
       44.61         5.19        18.87        19.10        13.15        17.39 
TCGA-44-2661 TCGA-44-2662 TCGA-44-2665 TCGA-44-2666 TCGA-44-2668 TCGA-44-3396 
        3.39        15.78        13.15         3.19         8.09        10.22 
TCGA-44-3398 TCGA-44-3918 TCGA-44-3919 TCGA-44-4112 TCGA-44-5643 TCGA-44-5645 
        8.32         6.44         6.21         4.60         3.48         6.84 
TCGA-44-6144 TCGA-44-6145 TCGA-44-6146 TCGA-44-6147 TCGA-44-6148 TCGA-44-6774 
        0.30         3.35         9.93         7.76         3.12         5.42 
TCGA-44-6775 TCGA-44-6776 TCGA-44-6777 TCGA-44-6778 TCGA-44-6779 TCGA-49-4486 
        2.70        63.72        32.45        36.49        16.41        76.21 
TCGA-49-4487 TCGA-49-4488 TCGA-49-4490 TCGA-49-4494 TCGA-49-4501 TCGA-49-4505 
       28.11        28.57        12.66        35.54        46.72        14.07 
TCGA-49-4506 TCGA-49-4507 TCGA-49-4510 TCGA-49-4512 TCGA-49-4514 TCGA-49-6742 
       32.84         8.81        29.46        29.75        43.20        15.02 
TCGA-49-6745 TCGA-50-5044 TCGA-50-5045 TCGA-50-5049 TCGA-50-5051 TCGA-50-5055 
        4.93        20.48        71.47        48.82        14.96        25.81 
TCGA-50-5066 TCGA-50-5068 TCGA-50-5072 TCGA-50-5930 TCGA-50-5931 TCGA-50-5932 
        9.76        49.28         8.05         9.27         8.78        35.87 
TCGA-50-5933 TCGA-50-5935 TCGA-50-5936 TCGA-50-5939 TCGA-50-5941 TCGA-50-5942 
       77.88        21.47         8.45        15.12         9.37         4.44 
TCGA-50-5944 TCGA-50-5946 TCGA-50-6590 TCGA-50-6591 TCGA-50-6592 TCGA-50-6593 
       12.26        11.47        42.31         3.88        25.51        11.05 
TCGA-50-6594 TCGA-50-6595 TCGA-50-6597 TCGA-55-1592 TCGA-55-1594 TCGA-55-1595 
       12.16         6.21        33.37        23.05        38.73        48.62 
TCGA-55-1596 TCGA-55-5899 TCGA-55-6543 TCGA-55-6642 TCGA-55-6712 TCGA-64-1676 
       45.17         2.86         0.07        32.61         0.79        56.81 
TCGA-64-1677 TCGA-64-1678 TCGA-64-1680 TCGA-64-5774 TCGA-64-5775 TCGA-64-5778 
       20.65        39.09        37.02        83.84         0.10        30.44 
TCGA-64-5781 TCGA-64-5815 TCGA-67-3770 TCGA-67-3772 TCGA-67-3773 TCGA-67-3774 
       39.52         7.33         0.99         0.59         2.04         0.59 
TCGA-67-6215 TCGA-67-6216 TCGA-67-6217 TCGA-71-6725 TCGA-73-4658 TCGA-73-4659 
        0.89         0.69        13.87         2.01        52.57        23.38 
TCGA-73-4662 TCGA-73-4666 TCGA-73-4668 TCGA-73-4670 TCGA-73-4676 TCGA-73-4677 
       29.95        20.28        15.35         0.46         4.01         1.25 
TCGA-91-6828 TCGA-91-6829 TCGA-91-6835 TCGA-91-6836 
        1.22        41.33         1.15         0.36 

  WDR64 MUTATED WDR64 WILD-TYPE 
           1.28            0.07 
  WDR64 MUTATED WDR64 WILD-TYPE 
          16.67           85.32 
  WDR64 MUTATED WDR64 WILD-TYPE 
           9.96           14.50 
[1] "1.3 - 16.7 (10.0)" "0.1 - 85.3 (14.5)"
     TCGA-05-4249      TCGA-05-4250      TCGA-05-4382      TCGA-05-4384 
"WDR64 WILD-TYPE" "WDR64 WILD-TYPE" "WDR64 WILD-TYPE" "WDR64 WILD-TYPE" 
     TCGA-05-4390      TCGA-05-4396      TCGA-05-4397      TCGA-05-4398 
"WDR64 WILD-TYPE"   "WDR64 MUTATED" "WDR64 WILD-TYPE" "WDR64 WILD-TYPE" 
     TCGA-05-4402      TCGA-05-4405      TCGA-05-4415      TCGA-05-4417 
"WDR64 WILD-TYPE" "WDR64 WILD-TYPE" "WDR64 WILD-TYPE" "WDR64 WILD-TYPE" 
     TCGA-05-4418      TCGA-05-4420      TCGA-05-4424      TCGA-05-4426 
"WDR64 WILD-TYPE" "WDR64 WILD-TYPE" "WDR64 WILD-TYPE" "WDR64 WILD-TYPE" 
     TCGA-05-4427      TCGA-05-4430      TCGA-05-4432      TCGA-05-4433 
"WDR64 WILD-TYPE" "WDR64 WILD-TYPE" "WDR64 WILD-TYPE" "WDR64 WILD-TYPE" 
     TCGA-05-4434      TCGA-05-5420      TCGA-05-5423      TCGA-05-5425 
"WDR64 WILD-TYPE" "WDR64 WILD-TYPE" "WDR64 WILD-TYPE" "WDR64 WILD-TYPE" 
     TCGA-05-5429      TCGA-05-5715      TCGA-35-3615      TCGA-35-4122 
"WDR64 WILD-TYPE" "WDR64 WILD-TYPE" "WDR64 WILD-TYPE" "WDR64 WILD-TYPE" 
     TCGA-35-4123      TCGA-35-5375      TCGA-38-4625      TCGA-38-4626 
"WDR64 WILD-TYPE" "WDR64 WILD-TYPE" "WDR64 WILD-TYPE" "WDR64 WILD-TYPE" 
     TCGA-38-4627      TCGA-38-4628      TCGA-38-4629      TCGA-38-4630 
"WDR64 WILD-TYPE" "WDR64 WILD-TYPE" "WDR64 WILD-TYPE" "WDR64 WILD-TYPE" 
     TCGA-38-4631      TCGA-38-4632      TCGA-38-6178      TCGA-44-2655 
"WDR64 WILD-TYPE" "WDR64 WILD-TYPE" "WDR64 WILD-TYPE" "WDR64 WILD-TYPE" 
     TCGA-44-2656      TCGA-44-2657      TCGA-44-2659      TCGA-44-2661 
"WDR64 WILD-TYPE" "WDR64 WILD-TYPE" "WDR64 WILD-TYPE" "WDR64 WILD-TYPE" 
     TCGA-44-2662      TCGA-44-2665      TCGA-44-2666      TCGA-44-2668 
"WDR64 WILD-TYPE" "WDR64 WILD-TYPE" "WDR64 WILD-TYPE" "WDR64 WILD-TYPE" 
     TCGA-44-3396      TCGA-44-3398      TCGA-44-3918      TCGA-44-3919 
"WDR64 WILD-TYPE" "WDR64 WILD-TYPE" "WDR64 WILD-TYPE" "WDR64 WILD-TYPE" 
     TCGA-44-4112      TCGA-44-5643      TCGA-44-5645      TCGA-44-6144 
"WDR64 WILD-TYPE" "WDR64 WILD-TYPE" "WDR64 WILD-TYPE" "WDR64 WILD-TYPE" 
     TCGA-44-6145      TCGA-44-6146      TCGA-44-6147      TCGA-44-6148 
"WDR64 WILD-TYPE" "WDR64 WILD-TYPE" "WDR64 WILD-TYPE" "WDR64 WILD-TYPE" 
     TCGA-44-6774      TCGA-44-6775      TCGA-44-6776      TCGA-44-6777 
"WDR64 WILD-TYPE" "WDR64 WILD-TYPE" "WDR64 WILD-TYPE" "WDR64 WILD-TYPE" 
     TCGA-44-6778      TCGA-44-6779      TCGA-49-4486      TCGA-49-4487 
"WDR64 WILD-TYPE" "WDR64 WILD-TYPE" "WDR64 WILD-TYPE" "WDR64 WILD-TYPE" 
     TCGA-49-4488      TCGA-49-4490      TCGA-49-4494      TCGA-49-4501 
"WDR64 WILD-TYPE" "WDR64 WILD-TYPE" "WDR64 WILD-TYPE" "WDR64 WILD-TYPE" 
     TCGA-49-4505      TCGA-49-4506      TCGA-49-4507      TCGA-49-4510 
"WDR64 WILD-TYPE" "WDR64 WILD-TYPE" "WDR64 WILD-TYPE" "WDR64 WILD-TYPE" 
     TCGA-49-4512      TCGA-49-4514      TCGA-49-6742      TCGA-49-6743 
"WDR64 WILD-TYPE" "WDR64 WILD-TYPE" "WDR64 WILD-TYPE"   "WDR64 MUTATED" 
     TCGA-49-6744      TCGA-49-6745      TCGA-50-5044      TCGA-50-5045 
  "WDR64 MUTATED" "WDR64 WILD-TYPE" "WDR64 WILD-TYPE" "WDR64 WILD-TYPE" 
     TCGA-50-5049      TCGA-50-5051      TCGA-50-5055      TCGA-50-5066 
"WDR64 WILD-TYPE" "WDR64 WILD-TYPE" "WDR64 WILD-TYPE" "WDR64 WILD-TYPE" 
     TCGA-50-5068      TCGA-50-5072      TCGA-50-5930      TCGA-50-5931 
"WDR64 WILD-TYPE" "WDR64 WILD-TYPE" "WDR64 WILD-TYPE" "WDR64 WILD-TYPE" 
     TCGA-50-5932      TCGA-50-5933      TCGA-50-5935      TCGA-50-5936 
"WDR64 WILD-TYPE" "WDR64 WILD-TYPE" "WDR64 WILD-TYPE" "WDR64 WILD-TYPE" 
     TCGA-50-5939      TCGA-50-5941      TCGA-50-5942      TCGA-50-5944 
"WDR64 WILD-TYPE" "WDR64 WILD-TYPE" "WDR64 WILD-TYPE" "WDR64 WILD-TYPE" 
     TCGA-50-5946      TCGA-50-6590      TCGA-50-6591      TCGA-50-6592 
"WDR64 WILD-TYPE" "WDR64 WILD-TYPE" "WDR64 WILD-TYPE" "WDR64 WILD-TYPE" 
     TCGA-50-6593      TCGA-50-6594      TCGA-50-6595      TCGA-50-6597 
"WDR64 WILD-TYPE" "WDR64 WILD-TYPE" "WDR64 WILD-TYPE" "WDR64 WILD-TYPE" 
     TCGA-55-1592      TCGA-55-1594      TCGA-55-1595      TCGA-55-1596 
"WDR64 WILD-TYPE" "WDR64 WILD-TYPE" "WDR64 WILD-TYPE" "WDR64 WILD-TYPE" 
     TCGA-55-5899      TCGA-55-6543      TCGA-55-6642      TCGA-55-6712 
"WDR64 WILD-TYPE" "WDR64 WILD-TYPE" "WDR64 WILD-TYPE" "WDR64 WILD-TYPE" 
     TCGA-64-1676      TCGA-64-1677      TCGA-64-1678      TCGA-64-1680 
"WDR64 WILD-TYPE" "WDR64 WILD-TYPE" "WDR64 WILD-TYPE" "WDR64 WILD-TYPE" 
     TCGA-64-5774      TCGA-64-5775      TCGA-64-5778      TCGA-64-5779 
"WDR64 WILD-TYPE" "WDR64 WILD-TYPE" "WDR64 WILD-TYPE"   "WDR64 MUTATED" 
     TCGA-64-5781      TCGA-64-5815      TCGA-67-3770      TCGA-67-3771 
"WDR64 WILD-TYPE" "WDR64 WILD-TYPE" "WDR64 WILD-TYPE"   "WDR64 MUTATED" 
     TCGA-67-3772      TCGA-67-3773      TCGA-67-3774      TCGA-67-6215 
"WDR64 WILD-TYPE" "WDR64 WILD-TYPE" "WDR64 WILD-TYPE" "WDR64 WILD-TYPE" 
     TCGA-67-6216      TCGA-67-6217      TCGA-71-6725      TCGA-73-4658 
"WDR64 WILD-TYPE" "WDR64 WILD-TYPE" "WDR64 WILD-TYPE" "WDR64 WILD-TYPE" 
     TCGA-73-4659      TCGA-73-4662      TCGA-73-4666      TCGA-73-4668 
"WDR64 WILD-TYPE" "WDR64 WILD-TYPE" "WDR64 WILD-TYPE" "WDR64 WILD-TYPE" 
     TCGA-73-4670      TCGA-73-4675      TCGA-73-4676      TCGA-73-4677 
"WDR64 WILD-TYPE"   "WDR64 MUTATED" "WDR64 WILD-TYPE" "WDR64 WILD-TYPE" 
     TCGA-91-6828      TCGA-91-6829      TCGA-91-6831      TCGA-91-6835 
"WDR64 WILD-TYPE" "WDR64 WILD-TYPE"   "WDR64 MUTATED" "WDR64 WILD-TYPE" 
     TCGA-91-6836 
"WDR64 WILD-TYPE" 
     TCGA-05-4249      TCGA-05-4250      TCGA-05-4382      TCGA-05-4384 
"WDR64 WILD-TYPE" "WDR64 WILD-TYPE" "WDR64 WILD-TYPE" "WDR64 WILD-TYPE" 
     TCGA-05-4390      TCGA-05-4396      TCGA-05-4397      TCGA-05-4398 
"WDR64 WILD-TYPE"   "WDR64 MUTATED" "WDR64 WILD-TYPE" "WDR64 WILD-TYPE" 
     TCGA-05-4402      TCGA-05-4405      TCGA-05-4415      TCGA-05-4417 
"WDR64 WILD-TYPE" "WDR64 WILD-TYPE" "WDR64 WILD-TYPE" "WDR64 WILD-TYPE" 
     TCGA-05-4418      TCGA-05-4420      TCGA-05-4424      TCGA-05-4426 
"WDR64 WILD-TYPE" "WDR64 WILD-TYPE" "WDR64 WILD-TYPE" "WDR64 WILD-TYPE" 
     TCGA-05-4427      TCGA-05-4430      TCGA-05-4432      TCGA-05-4433 
"WDR64 WILD-TYPE" "WDR64 WILD-TYPE" "WDR64 WILD-TYPE" "WDR64 WILD-TYPE" 
     TCGA-05-4434      TCGA-05-5420      TCGA-05-5423      TCGA-05-5425 
"WDR64 WILD-TYPE" "WDR64 WILD-TYPE" "WDR64 WILD-TYPE" "WDR64 WILD-TYPE" 
     TCGA-05-5429      TCGA-05-5715      TCGA-35-3615      TCGA-35-4122 
"WDR64 WILD-TYPE" "WDR64 WILD-TYPE" "WDR64 WILD-TYPE" "WDR64 WILD-TYPE" 
     TCGA-35-4123      TCGA-35-5375      TCGA-38-4625      TCGA-38-4626 
"WDR64 WILD-TYPE" "WDR64 WILD-TYPE" "WDR64 WILD-TYPE" "WDR64 WILD-TYPE" 
     TCGA-38-4627      TCGA-38-4628      TCGA-38-4629      TCGA-38-4630 
"WDR64 WILD-TYPE" "WDR64 WILD-TYPE" "WDR64 WILD-TYPE" "WDR64 WILD-TYPE" 
     TCGA-38-4631      TCGA-38-4632      TCGA-38-6178      TCGA-44-2655 
"WDR64 WILD-TYPE" "WDR64 WILD-TYPE" "WDR64 WILD-TYPE" "WDR64 WILD-TYPE" 
     TCGA-44-2656      TCGA-44-2657      TCGA-44-2659      TCGA-44-2661 
"WDR64 WILD-TYPE" "WDR64 WILD-TYPE" "WDR64 WILD-TYPE" "WDR64 WILD-TYPE" 
     TCGA-44-2662      TCGA-44-2665      TCGA-44-2666      TCGA-44-2668 
"WDR64 WILD-TYPE" "WDR64 WILD-TYPE" "WDR64 WILD-TYPE" "WDR64 WILD-TYPE" 
     TCGA-44-3396      TCGA-44-3398      TCGA-44-3918      TCGA-44-3919 
"WDR64 WILD-TYPE" "WDR64 WILD-TYPE" "WDR64 WILD-TYPE" "WDR64 WILD-TYPE" 
     TCGA-44-4112      TCGA-44-5643      TCGA-44-5645      TCGA-44-6144 
"WDR64 WILD-TYPE" "WDR64 WILD-TYPE" "WDR64 WILD-TYPE" "WDR64 WILD-TYPE" 
     TCGA-44-6145      TCGA-44-6146      TCGA-44-6147      TCGA-44-6148 
"WDR64 WILD-TYPE" "WDR64 WILD-TYPE" "WDR64 WILD-TYPE" "WDR64 WILD-TYPE" 
     TCGA-44-6774      TCGA-44-6775      TCGA-44-6776      TCGA-44-6777 
"WDR64 WILD-TYPE" "WDR64 WILD-TYPE" "WDR64 WILD-TYPE" "WDR64 WILD-TYPE" 
     TCGA-44-6778      TCGA-44-6779      TCGA-49-4486      TCGA-49-4487 
"WDR64 WILD-TYPE" "WDR64 WILD-TYPE" "WDR64 WILD-TYPE" "WDR64 WILD-TYPE" 
     TCGA-49-4488      TCGA-49-4490      TCGA-49-4494      TCGA-49-4501 
"WDR64 WILD-TYPE" "WDR64 WILD-TYPE" "WDR64 WILD-TYPE" "WDR64 WILD-TYPE" 
     TCGA-49-4505      TCGA-49-4506      TCGA-49-4507      TCGA-49-4510 
"WDR64 WILD-TYPE" "WDR64 WILD-TYPE" "WDR64 WILD-TYPE" "WDR64 WILD-TYPE" 
     TCGA-49-4512      TCGA-49-4514      TCGA-49-6742      TCGA-49-6743 
"WDR64 WILD-TYPE" "WDR64 WILD-TYPE" "WDR64 WILD-TYPE"   "WDR64 MUTATED" 
     TCGA-49-6744      TCGA-49-6745      TCGA-50-5044      TCGA-50-5045 
  "WDR64 MUTATED" "WDR64 WILD-TYPE" "WDR64 WILD-TYPE" "WDR64 WILD-TYPE" 
     TCGA-50-5049      TCGA-50-5051      TCGA-50-5055      TCGA-50-5066 
"WDR64 WILD-TYPE" "WDR64 WILD-TYPE" "WDR64 WILD-TYPE" "WDR64 WILD-TYPE" 
     TCGA-50-5068      TCGA-50-5072      TCGA-50-5930      TCGA-50-5931 
"WDR64 WILD-TYPE" "WDR64 WILD-TYPE" "WDR64 WILD-TYPE" "WDR64 WILD-TYPE" 
     TCGA-50-5932      TCGA-50-5933      TCGA-50-5935      TCGA-50-5936 
"WDR64 WILD-TYPE" "WDR64 WILD-TYPE" "WDR64 WILD-TYPE" "WDR64 WILD-TYPE" 
     TCGA-50-5939      TCGA-50-5941      TCGA-50-5942      TCGA-50-5944 
"WDR64 WILD-TYPE" "WDR64 WILD-TYPE" "WDR64 WILD-TYPE" "WDR64 WILD-TYPE" 
     TCGA-50-5946      TCGA-50-6590      TCGA-50-6591      TCGA-50-6592 
"WDR64 WILD-TYPE" "WDR64 WILD-TYPE" "WDR64 WILD-TYPE" "WDR64 WILD-TYPE" 
     TCGA-50-6593      TCGA-50-6594      TCGA-50-6595      TCGA-50-6597 
"WDR64 WILD-TYPE" "WDR64 WILD-TYPE" "WDR64 WILD-TYPE" "WDR64 WILD-TYPE" 
     TCGA-55-1592      TCGA-55-1594      TCGA-55-1595      TCGA-55-1596 
"WDR64 WILD-TYPE" "WDR64 WILD-TYPE" "WDR64 WILD-TYPE" "WDR64 WILD-TYPE" 
     TCGA-55-5899      TCGA-55-6543      TCGA-55-6642      TCGA-55-6712 
"WDR64 WILD-TYPE" "WDR64 WILD-TYPE" "WDR64 WILD-TYPE" "WDR64 WILD-TYPE" 
     TCGA-64-1676      TCGA-64-1677      TCGA-64-1678      TCGA-64-1680 
"WDR64 WILD-TYPE" "WDR64 WILD-TYPE" "WDR64 WILD-TYPE" "WDR64 WILD-TYPE" 
     TCGA-64-5774      TCGA-64-5775      TCGA-64-5778      TCGA-64-5779 
"WDR64 WILD-TYPE" "WDR64 WILD-TYPE" "WDR64 WILD-TYPE"   "WDR64 MUTATED" 
     TCGA-64-5781      TCGA-64-5815      TCGA-67-3770      TCGA-67-3771 
"WDR64 WILD-TYPE" "WDR64 WILD-TYPE" "WDR64 WILD-TYPE"   "WDR64 MUTATED" 
     TCGA-67-3772      TCGA-67-3773      TCGA-67-3774      TCGA-67-6215 
"WDR64 WILD-TYPE" "WDR64 WILD-TYPE" "WDR64 WILD-TYPE" "WDR64 WILD-TYPE" 
     TCGA-67-6216      TCGA-67-6217      TCGA-71-6725      TCGA-73-4658 
"WDR64 WILD-TYPE" "WDR64 WILD-TYPE" "WDR64 WILD-TYPE" "WDR64 WILD-TYPE" 
     TCGA-73-4659      TCGA-73-4662      TCGA-73-4666      TCGA-73-4668 
"WDR64 WILD-TYPE" "WDR64 WILD-TYPE" "WDR64 WILD-TYPE" "WDR64 WILD-TYPE" 
     TCGA-73-4670      TCGA-73-4675      TCGA-73-4676      TCGA-73-4677 
"WDR64 WILD-TYPE"   "WDR64 MUTATED" "WDR64 WILD-TYPE" "WDR64 WILD-TYPE" 
     TCGA-91-6828      TCGA-91-6829      TCGA-91-6831      TCGA-91-6835 
"WDR64 WILD-TYPE" "WDR64 WILD-TYPE"   "WDR64 MUTATED" "WDR64 WILD-TYPE" 
     TCGA-91-6836 
"WDR64 WILD-TYPE" 
     TCGA-05-4249      TCGA-05-4250      TCGA-05-4382      TCGA-05-4384 
"WDR64 WILD-TYPE" "WDR64 WILD-TYPE" "WDR64 WILD-TYPE" "WDR64 WILD-TYPE" 
     TCGA-05-4390      TCGA-05-4396      TCGA-05-4397      TCGA-05-4398 
"WDR64 WILD-TYPE"   "WDR64 MUTATED" "WDR64 WILD-TYPE" "WDR64 WILD-TYPE" 
     TCGA-05-4402      TCGA-05-4405      TCGA-05-4415      TCGA-05-4417 
"WDR64 WILD-TYPE" "WDR64 WILD-TYPE" "WDR64 WILD-TYPE" "WDR64 WILD-TYPE" 
     TCGA-05-4418      TCGA-05-4420      TCGA-05-4424      TCGA-05-4426 
"WDR64 WILD-TYPE" "WDR64 WILD-TYPE" "WDR64 WILD-TYPE" "WDR64 WILD-TYPE" 
     TCGA-05-4427      TCGA-05-4430      TCGA-05-4432      TCGA-05-4433 
"WDR64 WILD-TYPE" "WDR64 WILD-TYPE" "WDR64 WILD-TYPE" "WDR64 WILD-TYPE" 
     TCGA-05-4434      TCGA-05-5420      TCGA-05-5423      TCGA-05-5425 
"WDR64 WILD-TYPE" "WDR64 WILD-TYPE" "WDR64 WILD-TYPE" "WDR64 WILD-TYPE" 
     TCGA-05-5429      TCGA-05-5715      TCGA-35-3615      TCGA-35-4122 
"WDR64 WILD-TYPE" "WDR64 WILD-TYPE" "WDR64 WILD-TYPE" "WDR64 WILD-TYPE" 
     TCGA-35-4123      TCGA-35-5375      TCGA-38-4625      TCGA-38-4626 
"WDR64 WILD-TYPE" "WDR64 WILD-TYPE" "WDR64 WILD-TYPE" "WDR64 WILD-TYPE" 
     TCGA-38-4627      TCGA-38-4628      TCGA-38-4629      TCGA-38-4630 
"WDR64 WILD-TYPE" "WDR64 WILD-TYPE" "WDR64 WILD-TYPE" "WDR64 WILD-TYPE" 
     TCGA-38-4631      TCGA-38-4632      TCGA-38-6178      TCGA-44-2655 
"WDR64 WILD-TYPE" "WDR64 WILD-TYPE" "WDR64 WILD-TYPE" "WDR64 WILD-TYPE" 
     TCGA-44-2656      TCGA-44-2657      TCGA-44-2659      TCGA-44-2661 
"WDR64 WILD-TYPE" "WDR64 WILD-TYPE" "WDR64 WILD-TYPE" "WDR64 WILD-TYPE" 
     TCGA-44-2662      TCGA-44-2665      TCGA-44-2666      TCGA-44-2668 
"WDR64 WILD-TYPE" "WDR64 WILD-TYPE" "WDR64 WILD-TYPE" "WDR64 WILD-TYPE" 
     TCGA-44-3396      TCGA-44-3398      TCGA-44-3918      TCGA-44-3919 
"WDR64 WILD-TYPE" "WDR64 WILD-TYPE" "WDR64 WILD-TYPE" "WDR64 WILD-TYPE" 
     TCGA-44-4112      TCGA-44-5643      TCGA-44-5645      TCGA-44-6144 
"WDR64 WILD-TYPE" "WDR64 WILD-TYPE" "WDR64 WILD-TYPE" "WDR64 WILD-TYPE" 
     TCGA-44-6145      TCGA-44-6146      TCGA-44-6147      TCGA-44-6148 
"WDR64 WILD-TYPE" "WDR64 WILD-TYPE" "WDR64 WILD-TYPE" "WDR64 WILD-TYPE" 
     TCGA-44-6774      TCGA-44-6775      TCGA-44-6776      TCGA-44-6777 
"WDR64 WILD-TYPE" "WDR64 WILD-TYPE" "WDR64 WILD-TYPE" "WDR64 WILD-TYPE" 
     TCGA-44-6778      TCGA-44-6779      TCGA-49-4486      TCGA-49-4487 
"WDR64 WILD-TYPE" "WDR64 WILD-TYPE" "WDR64 WILD-TYPE" "WDR64 WILD-TYPE" 
     TCGA-49-4488      TCGA-49-4490      TCGA-49-4494      TCGA-49-4501 
"WDR64 WILD-TYPE" "WDR64 WILD-TYPE" "WDR64 WILD-TYPE" "WDR64 WILD-TYPE" 
     TCGA-49-4505      TCGA-49-4506      TCGA-49-4507      TCGA-49-4510 
"WDR64 WILD-TYPE" "WDR64 WILD-TYPE" "WDR64 WILD-TYPE" "WDR64 WILD-TYPE" 
     TCGA-49-4512      TCGA-49-4514      TCGA-49-6742      TCGA-49-6743 
"WDR64 WILD-TYPE" "WDR64 WILD-TYPE" "WDR64 WILD-TYPE"   "WDR64 MUTATED" 
     TCGA-49-6744      TCGA-49-6745      TCGA-50-5044      TCGA-50-5045 
  "WDR64 MUTATED" "WDR64 WILD-TYPE" "WDR64 WILD-TYPE" "WDR64 WILD-TYPE" 
     TCGA-50-5049      TCGA-50-5051      TCGA-50-5055      TCGA-50-5066 
"WDR64 WILD-TYPE" "WDR64 WILD-TYPE" "WDR64 WILD-TYPE" "WDR64 WILD-TYPE" 
     TCGA-50-5068      TCGA-50-5072      TCGA-50-5930      TCGA-50-5931 
"WDR64 WILD-TYPE" "WDR64 WILD-TYPE" "WDR64 WILD-TYPE" "WDR64 WILD-TYPE" 
     TCGA-50-5932      TCGA-50-5933      TCGA-50-5935      TCGA-50-5936 
"WDR64 WILD-TYPE" "WDR64 WILD-TYPE" "WDR64 WILD-TYPE" "WDR64 WILD-TYPE" 
     TCGA-50-5939      TCGA-50-5941      TCGA-50-5942      TCGA-50-5944 
"WDR64 WILD-TYPE" "WDR64 WILD-TYPE" "WDR64 WILD-TYPE" "WDR64 WILD-TYPE" 
     TCGA-50-5946      TCGA-50-6590      TCGA-50-6591      TCGA-50-6592 
"WDR64 WILD-TYPE" "WDR64 WILD-TYPE" "WDR64 WILD-TYPE" "WDR64 WILD-TYPE" 
     TCGA-50-6593      TCGA-50-6594      TCGA-50-6595      TCGA-50-6597 
"WDR64 WILD-TYPE" "WDR64 WILD-TYPE" "WDR64 WILD-TYPE" "WDR64 WILD-TYPE" 
     TCGA-55-1592      TCGA-55-1594      TCGA-55-1595      TCGA-55-1596 
"WDR64 WILD-TYPE" "WDR64 WILD-TYPE" "WDR64 WILD-TYPE" "WDR64 WILD-TYPE" 
     TCGA-55-5899      TCGA-55-6543      TCGA-55-6642      TCGA-55-6712 
"WDR64 WILD-TYPE" "WDR64 WILD-TYPE" "WDR64 WILD-TYPE" "WDR64 WILD-TYPE" 
     TCGA-64-1676      TCGA-64-1677      TCGA-64-1678      TCGA-64-1680 
"WDR64 WILD-TYPE" "WDR64 WILD-TYPE" "WDR64 WILD-TYPE" "WDR64 WILD-TYPE" 
     TCGA-64-5774      TCGA-64-5775      TCGA-64-5778      TCGA-64-5779 
"WDR64 WILD-TYPE" "WDR64 WILD-TYPE" "WDR64 WILD-TYPE"   "WDR64 MUTATED" 
     TCGA-64-5781      TCGA-64-5815      TCGA-67-3770      TCGA-67-3771 
"WDR64 WILD-TYPE" "WDR64 WILD-TYPE" "WDR64 WILD-TYPE"   "WDR64 MUTATED" 
     TCGA-67-3772      TCGA-67-3773      TCGA-67-3774      TCGA-67-6215 
"WDR64 WILD-TYPE" "WDR64 WILD-TYPE" "WDR64 WILD-TYPE" "WDR64 WILD-TYPE" 
     TCGA-67-6216      TCGA-67-6217      TCGA-71-6725      TCGA-73-4658 
"WDR64 WILD-TYPE" "WDR64 WILD-TYPE" "WDR64 WILD-TYPE" "WDR64 WILD-TYPE" 
     TCGA-73-4659      TCGA-73-4662      TCGA-73-4666      TCGA-73-4668 
"WDR64 WILD-TYPE" "WDR64 WILD-TYPE" "WDR64 WILD-TYPE" "WDR64 WILD-TYPE" 
     TCGA-73-4670      TCGA-73-4675      TCGA-73-4676      TCGA-73-4677 
"WDR64 WILD-TYPE"   "WDR64 MUTATED" "WDR64 WILD-TYPE" "WDR64 WILD-TYPE" 
     TCGA-91-6828      TCGA-91-6829      TCGA-91-6831      TCGA-91-6835 
"WDR64 WILD-TYPE" "WDR64 WILD-TYPE"   "WDR64 MUTATED" "WDR64 WILD-TYPE" 
     TCGA-91-6836 
"WDR64 WILD-TYPE" 
[1] "hr=" "1.3"
D213V2, continuous
D213V3, binary
[1] "tbl2"
                 cls
clus              [,1] [,2]
  WDR64 MUTATED      3    4
  WDR64 WILD-TYPE   90   75
        clus
vv       WDR64 MUTATED WDR64 WILD-TYPE
  FEMALE             3              90
  MALE               4              75
D213V4, continuous
D213V5, multiclass
D213V6, multiclass
    clus
vv   WDR64 MUTATED WDR64 WILD-TYPE
  T1             2              39
  T2             3             105
  T3             1              13
  T4             1               7
D213V7, multiclass
       clus
vv      WDR64 MUTATED WDR64 WILD-TYPE
  N0                2              93
  N1                3              34
  N2+N3             2              33
D213V8, multiclass
    clus
vv   WDR64 MUTATED WDR64 WILD-TYPE
  M0             4             133
  M1             0               9
  MX             3              19
D213V9, multiclass
     clus
vv    WDR64 MUTATED WDR64 WILD-TYPE
  I               2              86
  II              1              32
  III             4              35
  IV              0               9
D213V10, binary
[1] "tbl2"
                 cls
clus              [,1] [,2]
  WDR64 MUTATED      0    7
  WDR64 WILD-TYPE   16  149
     clus
vv    WDR64 MUTATED WDR64 WILD-TYPE
  NO              0              16
  YES             7             149
D213V11, continuous
D213V12, continuous
D213V13, multiclass
                                             clus
vv                                            WDR64 MUTATED WDR64 WILD-TYPE
  CURRENT REFORMED SMOKER FOR < OR = 15 YEARS             5              57
  CURRENT REFORMED SMOKER FOR > 15 YEARS                  1              45
  CURRENT SMOKER                                          1              27
  LIFELONG NON-SMOKER                                     0              24
D213V14, continuous

Clustering(214) Variable = OR4P4 MUTATION ANALYSIS
D214V1, survival
                 sevent
clus2              0  1
  OR4P4 MUTATED    5  1
  OR4P4 WILD-TYPE 94 49
  OR4P4 MUTATED OR4P4 WILD-TYPE 
              6             143 
  OR4P4 MUTATED OR4P4 WILD-TYPE 
              1              49 
$`OR4P4 MUTATED`
TCGA-05-4382 TCGA-05-4417 TCGA-44-2655 TCGA-44-2668 TCGA-49-6744 TCGA-50-6594 
       19.92        14.93        18.87         8.09        12.99        12.16 

$`OR4P4 WILD-TYPE`
TCGA-05-4249 TCGA-05-4250 TCGA-05-4384 TCGA-05-4390 TCGA-05-4396 TCGA-05-4397 
       38.07         3.98        14.01        37.02         9.96        24.03 
TCGA-05-4398 TCGA-05-4402 TCGA-05-4405 TCGA-05-4415 TCGA-05-4418 TCGA-05-4420 
       47.05         8.02        20.05         2.96         8.98        29.95 
TCGA-05-4424 TCGA-05-4426 TCGA-05-4427 TCGA-05-4430 TCGA-05-4432 TCGA-05-4433 
       30.02        26.01        26.01        25.02        25.02        24.00 
TCGA-05-4434 TCGA-05-5420 TCGA-05-5423 TCGA-05-5425 TCGA-05-5429 TCGA-05-5715 
       15.02         1.02         4.96         2.96         0.99         2.04 
TCGA-35-3615 TCGA-35-4122 TCGA-35-4123 TCGA-35-5375 TCGA-38-4625 TCGA-38-4626 
        0.46         7.36         5.95         8.68        47.61        85.32 
TCGA-38-4627 TCGA-38-4628 TCGA-38-4629 TCGA-38-4630 TCGA-38-4631 TCGA-38-4632 
       37.71        49.02        28.37        35.28        11.64        44.61 
TCGA-38-6178 TCGA-44-2656 TCGA-44-2657 TCGA-44-2659 TCGA-44-2661 TCGA-44-2662 
        5.19        19.10        13.15        17.39         3.39        15.78 
TCGA-44-2665 TCGA-44-2666 TCGA-44-3396 TCGA-44-3398 TCGA-44-3918 TCGA-44-3919 
       13.15         3.19        10.22         8.32         6.44         6.21 
TCGA-44-4112 TCGA-44-5643 TCGA-44-5645 TCGA-44-6144 TCGA-44-6145 TCGA-44-6146 
        4.60         3.48         6.84         0.30         3.35         9.93 
TCGA-44-6147 TCGA-44-6148 TCGA-44-6774 TCGA-44-6775 TCGA-44-6776 TCGA-44-6777 
        7.76         3.12         5.42         2.70        63.72        32.45 
TCGA-44-6778 TCGA-44-6779 TCGA-49-4486 TCGA-49-4487 TCGA-49-4488 TCGA-49-4490 
       36.49        16.41        76.21        28.11        28.57        12.66 
TCGA-49-4494 TCGA-49-4501 TCGA-49-4505 TCGA-49-4506 TCGA-49-4507 TCGA-49-4510 
       35.54        46.72        14.07        32.84         8.81        29.46 
TCGA-49-4512 TCGA-49-4514 TCGA-49-6742 TCGA-49-6743 TCGA-49-6745 TCGA-50-5044 
       29.75        43.20        15.02        12.13         4.93        20.48 
TCGA-50-5045 TCGA-50-5049 TCGA-50-5051 TCGA-50-5055 TCGA-50-5066 TCGA-50-5068 
       71.47        48.82        14.96        25.81         9.76        49.28 
TCGA-50-5072 TCGA-50-5930 TCGA-50-5931 TCGA-50-5932 TCGA-50-5933 TCGA-50-5935 
        8.05         9.27         8.78        35.87        77.88        21.47 
TCGA-50-5936 TCGA-50-5939 TCGA-50-5941 TCGA-50-5942 TCGA-50-5944 TCGA-50-5946 
        8.45        15.12         9.37         4.44        12.26        11.47 
TCGA-50-6590 TCGA-50-6591 TCGA-50-6592 TCGA-50-6593 TCGA-50-6595 TCGA-50-6597 
       42.31         3.88        25.51        11.05         6.21        33.37 
TCGA-55-1592 TCGA-55-1594 TCGA-55-1595 TCGA-55-1596 TCGA-55-5899 TCGA-55-6543 
       23.05        38.73        48.62        45.17         2.86         0.07 
TCGA-55-6642 TCGA-55-6712 TCGA-64-1676 TCGA-64-1677 TCGA-64-1678 TCGA-64-1680 
       32.61         0.79        56.81        20.65        39.09        37.02 
TCGA-64-5774 TCGA-64-5775 TCGA-64-5778 TCGA-64-5779 TCGA-64-5781 TCGA-64-5815 
       83.84         0.10        30.44        16.67        39.52         7.33 
TCGA-67-3770 TCGA-67-3771 TCGA-67-3772 TCGA-67-3773 TCGA-67-3774 TCGA-67-6215 
        0.99         1.97         0.59         2.04         0.59         0.89 
TCGA-67-6216 TCGA-67-6217 TCGA-71-6725 TCGA-73-4658 TCGA-73-4659 TCGA-73-4662 
        0.69        13.87         2.01        52.57        23.38        29.95 
TCGA-73-4666 TCGA-73-4668 TCGA-73-4670 TCGA-73-4675 TCGA-73-4676 TCGA-73-4677 
       20.28        15.35         0.46         1.32         4.01         1.25 
TCGA-91-6828 TCGA-91-6829 TCGA-91-6831 TCGA-91-6835 TCGA-91-6836 
        1.22        41.33         1.28         1.15         0.36 

  OR4P4 MUTATED OR4P4 WILD-TYPE 
           8.09            0.07 
  OR4P4 MUTATED OR4P4 WILD-TYPE 
          19.92           85.32 
  OR4P4 MUTATED OR4P4 WILD-TYPE 
          13.96           13.87 
[1] "8.1 - 19.9 (14.0)" "0.1 - 85.3 (13.9)"
     TCGA-05-4249      TCGA-05-4250      TCGA-05-4382      TCGA-05-4384 
"OR4P4 WILD-TYPE" "OR4P4 WILD-TYPE"   "OR4P4 MUTATED" "OR4P4 WILD-TYPE" 
     TCGA-05-4390      TCGA-05-4396      TCGA-05-4397      TCGA-05-4398 
"OR4P4 WILD-TYPE" "OR4P4 WILD-TYPE" "OR4P4 WILD-TYPE" "OR4P4 WILD-TYPE" 
     TCGA-05-4402      TCGA-05-4405      TCGA-05-4415      TCGA-05-4417 
"OR4P4 WILD-TYPE" "OR4P4 WILD-TYPE" "OR4P4 WILD-TYPE"   "OR4P4 MUTATED" 
     TCGA-05-4418      TCGA-05-4420      TCGA-05-4424      TCGA-05-4426 
"OR4P4 WILD-TYPE" "OR4P4 WILD-TYPE" "OR4P4 WILD-TYPE" "OR4P4 WILD-TYPE" 
     TCGA-05-4427      TCGA-05-4430      TCGA-05-4432      TCGA-05-4433 
"OR4P4 WILD-TYPE" "OR4P4 WILD-TYPE" "OR4P4 WILD-TYPE" "OR4P4 WILD-TYPE" 
     TCGA-05-4434      TCGA-05-5420      TCGA-05-5423      TCGA-05-5425 
"OR4P4 WILD-TYPE" "OR4P4 WILD-TYPE" "OR4P4 WILD-TYPE" "OR4P4 WILD-TYPE" 
     TCGA-05-5429      TCGA-05-5715      TCGA-35-3615      TCGA-35-4122 
"OR4P4 WILD-TYPE" "OR4P4 WILD-TYPE" "OR4P4 WILD-TYPE" "OR4P4 WILD-TYPE" 
     TCGA-35-4123      TCGA-35-5375      TCGA-38-4625      TCGA-38-4626 
"OR4P4 WILD-TYPE" "OR4P4 WILD-TYPE" "OR4P4 WILD-TYPE" "OR4P4 WILD-TYPE" 
     TCGA-38-4627      TCGA-38-4628      TCGA-38-4629      TCGA-38-4630 
"OR4P4 WILD-TYPE" "OR4P4 WILD-TYPE" "OR4P4 WILD-TYPE" "OR4P4 WILD-TYPE" 
     TCGA-38-4631      TCGA-38-4632      TCGA-38-6178      TCGA-44-2655 
"OR4P4 WILD-TYPE" "OR4P4 WILD-TYPE" "OR4P4 WILD-TYPE"   "OR4P4 MUTATED" 
     TCGA-44-2656      TCGA-44-2657      TCGA-44-2659      TCGA-44-2661 
"OR4P4 WILD-TYPE" "OR4P4 WILD-TYPE" "OR4P4 WILD-TYPE" "OR4P4 WILD-TYPE" 
     TCGA-44-2662      TCGA-44-2665      TCGA-44-2666      TCGA-44-2668 
"OR4P4 WILD-TYPE" "OR4P4 WILD-TYPE" "OR4P4 WILD-TYPE"   "OR4P4 MUTATED" 
     TCGA-44-3396      TCGA-44-3398      TCGA-44-3918      TCGA-44-3919 
"OR4P4 WILD-TYPE" "OR4P4 WILD-TYPE" "OR4P4 WILD-TYPE" "OR4P4 WILD-TYPE" 
     TCGA-44-4112      TCGA-44-5643      TCGA-44-5645      TCGA-44-6144 
"OR4P4 WILD-TYPE" "OR4P4 WILD-TYPE" "OR4P4 WILD-TYPE" "OR4P4 WILD-TYPE" 
     TCGA-44-6145      TCGA-44-6146      TCGA-44-6147      TCGA-44-6148 
"OR4P4 WILD-TYPE" "OR4P4 WILD-TYPE" "OR4P4 WILD-TYPE" "OR4P4 WILD-TYPE" 
     TCGA-44-6774      TCGA-44-6775      TCGA-44-6776      TCGA-44-6777 
"OR4P4 WILD-TYPE" "OR4P4 WILD-TYPE" "OR4P4 WILD-TYPE" "OR4P4 WILD-TYPE" 
     TCGA-44-6778      TCGA-44-6779      TCGA-49-4486      TCGA-49-4487 
"OR4P4 WILD-TYPE" "OR4P4 WILD-TYPE" "OR4P4 WILD-TYPE" "OR4P4 WILD-TYPE" 
     TCGA-49-4488      TCGA-49-4490      TCGA-49-4494      TCGA-49-4501 
"OR4P4 WILD-TYPE" "OR4P4 WILD-TYPE" "OR4P4 WILD-TYPE" "OR4P4 WILD-TYPE" 
     TCGA-49-4505      TCGA-49-4506      TCGA-49-4507      TCGA-49-4510 
"OR4P4 WILD-TYPE" "OR4P4 WILD-TYPE" "OR4P4 WILD-TYPE" "OR4P4 WILD-TYPE" 
     TCGA-49-4512      TCGA-49-4514      TCGA-49-6742      TCGA-49-6743 
"OR4P4 WILD-TYPE" "OR4P4 WILD-TYPE" "OR4P4 WILD-TYPE" "OR4P4 WILD-TYPE" 
     TCGA-49-6744      TCGA-49-6745      TCGA-50-5044      TCGA-50-5045 
  "OR4P4 MUTATED" "OR4P4 WILD-TYPE" "OR4P4 WILD-TYPE" "OR4P4 WILD-TYPE" 
     TCGA-50-5049      TCGA-50-5051      TCGA-50-5055      TCGA-50-5066 
"OR4P4 WILD-TYPE" "OR4P4 WILD-TYPE" "OR4P4 WILD-TYPE" "OR4P4 WILD-TYPE" 
     TCGA-50-5068      TCGA-50-5072      TCGA-50-5930      TCGA-50-5931 
"OR4P4 WILD-TYPE" "OR4P4 WILD-TYPE" "OR4P4 WILD-TYPE" "OR4P4 WILD-TYPE" 
     TCGA-50-5932      TCGA-50-5933      TCGA-50-5935      TCGA-50-5936 
"OR4P4 WILD-TYPE" "OR4P4 WILD-TYPE" "OR4P4 WILD-TYPE" "OR4P4 WILD-TYPE" 
     TCGA-50-5939      TCGA-50-5941      TCGA-50-5942      TCGA-50-5944 
"OR4P4 WILD-TYPE" "OR4P4 WILD-TYPE" "OR4P4 WILD-TYPE" "OR4P4 WILD-TYPE" 
     TCGA-50-5946      TCGA-50-6590      TCGA-50-6591      TCGA-50-6592 
"OR4P4 WILD-TYPE" "OR4P4 WILD-TYPE" "OR4P4 WILD-TYPE" "OR4P4 WILD-TYPE" 
     TCGA-50-6593      TCGA-50-6594      TCGA-50-6595      TCGA-50-6597 
"OR4P4 WILD-TYPE"   "OR4P4 MUTATED" "OR4P4 WILD-TYPE" "OR4P4 WILD-TYPE" 
     TCGA-55-1592      TCGA-55-1594      TCGA-55-1595      TCGA-55-1596 
"OR4P4 WILD-TYPE" "OR4P4 WILD-TYPE" "OR4P4 WILD-TYPE" "OR4P4 WILD-TYPE" 
     TCGA-55-5899      TCGA-55-6543      TCGA-55-6642      TCGA-55-6712 
"OR4P4 WILD-TYPE" "OR4P4 WILD-TYPE" "OR4P4 WILD-TYPE" "OR4P4 WILD-TYPE" 
     TCGA-64-1676      TCGA-64-1677      TCGA-64-1678      TCGA-64-1680 
"OR4P4 WILD-TYPE" "OR4P4 WILD-TYPE" "OR4P4 WILD-TYPE" "OR4P4 WILD-TYPE" 
     TCGA-64-5774      TCGA-64-5775      TCGA-64-5778      TCGA-64-5779 
"OR4P4 WILD-TYPE" "OR4P4 WILD-TYPE" "OR4P4 WILD-TYPE" "OR4P4 WILD-TYPE" 
     TCGA-64-5781      TCGA-64-5815      TCGA-67-3770      TCGA-67-3771 
"OR4P4 WILD-TYPE" "OR4P4 WILD-TYPE" "OR4P4 WILD-TYPE" "OR4P4 WILD-TYPE" 
     TCGA-67-3772      TCGA-67-3773      TCGA-67-3774      TCGA-67-6215 
"OR4P4 WILD-TYPE" "OR4P4 WILD-TYPE" "OR4P4 WILD-TYPE" "OR4P4 WILD-TYPE" 
     TCGA-67-6216      TCGA-67-6217      TCGA-71-6725      TCGA-73-4658 
"OR4P4 WILD-TYPE" "OR4P4 WILD-TYPE" "OR4P4 WILD-TYPE" "OR4P4 WILD-TYPE" 
     TCGA-73-4659      TCGA-73-4662      TCGA-73-4666      TCGA-73-4668 
"OR4P4 WILD-TYPE" "OR4P4 WILD-TYPE" "OR4P4 WILD-TYPE" "OR4P4 WILD-TYPE" 
     TCGA-73-4670      TCGA-73-4675      TCGA-73-4676      TCGA-73-4677 
"OR4P4 WILD-TYPE" "OR4P4 WILD-TYPE" "OR4P4 WILD-TYPE" "OR4P4 WILD-TYPE" 
     TCGA-91-6828      TCGA-91-6829      TCGA-91-6831      TCGA-91-6835 
"OR4P4 WILD-TYPE" "OR4P4 WILD-TYPE" "OR4P4 WILD-TYPE" "OR4P4 WILD-TYPE" 
     TCGA-91-6836 
"OR4P4 WILD-TYPE" 
     TCGA-05-4249      TCGA-05-4250      TCGA-05-4382      TCGA-05-4384 
"OR4P4 WILD-TYPE" "OR4P4 WILD-TYPE"   "OR4P4 MUTATED" "OR4P4 WILD-TYPE" 
     TCGA-05-4390      TCGA-05-4396      TCGA-05-4397      TCGA-05-4398 
"OR4P4 WILD-TYPE" "OR4P4 WILD-TYPE" "OR4P4 WILD-TYPE" "OR4P4 WILD-TYPE" 
     TCGA-05-4402      TCGA-05-4405      TCGA-05-4415      TCGA-05-4417 
"OR4P4 WILD-TYPE" "OR4P4 WILD-TYPE" "OR4P4 WILD-TYPE"   "OR4P4 MUTATED" 
     TCGA-05-4418      TCGA-05-4420      TCGA-05-4424      TCGA-05-4426 
"OR4P4 WILD-TYPE" "OR4P4 WILD-TYPE" "OR4P4 WILD-TYPE" "OR4P4 WILD-TYPE" 
     TCGA-05-4427      TCGA-05-4430      TCGA-05-4432      TCGA-05-4433 
"OR4P4 WILD-TYPE" "OR4P4 WILD-TYPE" "OR4P4 WILD-TYPE" "OR4P4 WILD-TYPE" 
     TCGA-05-4434      TCGA-05-5420      TCGA-05-5423      TCGA-05-5425 
"OR4P4 WILD-TYPE" "OR4P4 WILD-TYPE" "OR4P4 WILD-TYPE" "OR4P4 WILD-TYPE" 
     TCGA-05-5429      TCGA-05-5715      TCGA-35-3615      TCGA-35-4122 
"OR4P4 WILD-TYPE" "OR4P4 WILD-TYPE" "OR4P4 WILD-TYPE" "OR4P4 WILD-TYPE" 
     TCGA-35-4123      TCGA-35-5375      TCGA-38-4625      TCGA-38-4626 
"OR4P4 WILD-TYPE" "OR4P4 WILD-TYPE" "OR4P4 WILD-TYPE" "OR4P4 WILD-TYPE" 
     TCGA-38-4627      TCGA-38-4628      TCGA-38-4629      TCGA-38-4630 
"OR4P4 WILD-TYPE" "OR4P4 WILD-TYPE" "OR4P4 WILD-TYPE" "OR4P4 WILD-TYPE" 
     TCGA-38-4631      TCGA-38-4632      TCGA-38-6178      TCGA-44-2655 
"OR4P4 WILD-TYPE" "OR4P4 WILD-TYPE" "OR4P4 WILD-TYPE"   "OR4P4 MUTATED" 
     TCGA-44-2656      TCGA-44-2657      TCGA-44-2659      TCGA-44-2661 
"OR4P4 WILD-TYPE" "OR4P4 WILD-TYPE" "OR4P4 WILD-TYPE" "OR4P4 WILD-TYPE" 
     TCGA-44-2662      TCGA-44-2665      TCGA-44-2666      TCGA-44-2668 
"OR4P4 WILD-TYPE" "OR4P4 WILD-TYPE" "OR4P4 WILD-TYPE"   "OR4P4 MUTATED" 
     TCGA-44-3396      TCGA-44-3398      TCGA-44-3918      TCGA-44-3919 
"OR4P4 WILD-TYPE" "OR4P4 WILD-TYPE" "OR4P4 WILD-TYPE" "OR4P4 WILD-TYPE" 
     TCGA-44-4112      TCGA-44-5643      TCGA-44-5645      TCGA-44-6144 
"OR4P4 WILD-TYPE" "OR4P4 WILD-TYPE" "OR4P4 WILD-TYPE" "OR4P4 WILD-TYPE" 
     TCGA-44-6145      TCGA-44-6146      TCGA-44-6147      TCGA-44-6148 
"OR4P4 WILD-TYPE" "OR4P4 WILD-TYPE" "OR4P4 WILD-TYPE" "OR4P4 WILD-TYPE" 
     TCGA-44-6774      TCGA-44-6775      TCGA-44-6776      TCGA-44-6777 
"OR4P4 WILD-TYPE" "OR4P4 WILD-TYPE" "OR4P4 WILD-TYPE" "OR4P4 WILD-TYPE" 
     TCGA-44-6778      TCGA-44-6779      TCGA-49-4486      TCGA-49-4487 
"OR4P4 WILD-TYPE" "OR4P4 WILD-TYPE" "OR4P4 WILD-TYPE" "OR4P4 WILD-TYPE" 
     TCGA-49-4488      TCGA-49-4490      TCGA-49-4494      TCGA-49-4501 
"OR4P4 WILD-TYPE" "OR4P4 WILD-TYPE" "OR4P4 WILD-TYPE" "OR4P4 WILD-TYPE" 
     TCGA-49-4505      TCGA-49-4506      TCGA-49-4507      TCGA-49-4510 
"OR4P4 WILD-TYPE" "OR4P4 WILD-TYPE" "OR4P4 WILD-TYPE" "OR4P4 WILD-TYPE" 
     TCGA-49-4512      TCGA-49-4514      TCGA-49-6742      TCGA-49-6743 
"OR4P4 WILD-TYPE" "OR4P4 WILD-TYPE" "OR4P4 WILD-TYPE" "OR4P4 WILD-TYPE" 
     TCGA-49-6744      TCGA-49-6745      TCGA-50-5044      TCGA-50-5045 
  "OR4P4 MUTATED" "OR4P4 WILD-TYPE" "OR4P4 WILD-TYPE" "OR4P4 WILD-TYPE" 
     TCGA-50-5049      TCGA-50-5051      TCGA-50-5055      TCGA-50-5066 
"OR4P4 WILD-TYPE" "OR4P4 WILD-TYPE" "OR4P4 WILD-TYPE" "OR4P4 WILD-TYPE" 
     TCGA-50-5068      TCGA-50-5072      TCGA-50-5930      TCGA-50-5931 
"OR4P4 WILD-TYPE" "OR4P4 WILD-TYPE" "OR4P4 WILD-TYPE" "OR4P4 WILD-TYPE" 
     TCGA-50-5932      TCGA-50-5933      TCGA-50-5935      TCGA-50-5936 
"OR4P4 WILD-TYPE" "OR4P4 WILD-TYPE" "OR4P4 WILD-TYPE" "OR4P4 WILD-TYPE" 
     TCGA-50-5939      TCGA-50-5941      TCGA-50-5942      TCGA-50-5944 
"OR4P4 WILD-TYPE" "OR4P4 WILD-TYPE" "OR4P4 WILD-TYPE" "OR4P4 WILD-TYPE" 
     TCGA-50-5946      TCGA-50-6590      TCGA-50-6591      TCGA-50-6592 
"OR4P4 WILD-TYPE" "OR4P4 WILD-TYPE" "OR4P4 WILD-TYPE" "OR4P4 WILD-TYPE" 
     TCGA-50-6593      TCGA-50-6594      TCGA-50-6595      TCGA-50-6597 
"OR4P4 WILD-TYPE"   "OR4P4 MUTATED" "OR4P4 WILD-TYPE" "OR4P4 WILD-TYPE" 
     TCGA-55-1592      TCGA-55-1594      TCGA-55-1595      TCGA-55-1596 
"OR4P4 WILD-TYPE" "OR4P4 WILD-TYPE" "OR4P4 WILD-TYPE" "OR4P4 WILD-TYPE" 
     TCGA-55-5899      TCGA-55-6543      TCGA-55-6642      TCGA-55-6712 
"OR4P4 WILD-TYPE" "OR4P4 WILD-TYPE" "OR4P4 WILD-TYPE" "OR4P4 WILD-TYPE" 
     TCGA-64-1676      TCGA-64-1677      TCGA-64-1678      TCGA-64-1680 
"OR4P4 WILD-TYPE" "OR4P4 WILD-TYPE" "OR4P4 WILD-TYPE" "OR4P4 WILD-TYPE" 
     TCGA-64-5774      TCGA-64-5775      TCGA-64-5778      TCGA-64-5779 
"OR4P4 WILD-TYPE" "OR4P4 WILD-TYPE" "OR4P4 WILD-TYPE" "OR4P4 WILD-TYPE" 
     TCGA-64-5781      TCGA-64-5815      TCGA-67-3770      TCGA-67-3771 
"OR4P4 WILD-TYPE" "OR4P4 WILD-TYPE" "OR4P4 WILD-TYPE" "OR4P4 WILD-TYPE" 
     TCGA-67-3772      TCGA-67-3773      TCGA-67-3774      TCGA-67-6215 
"OR4P4 WILD-TYPE" "OR4P4 WILD-TYPE" "OR4P4 WILD-TYPE" "OR4P4 WILD-TYPE" 
     TCGA-67-6216      TCGA-67-6217      TCGA-71-6725      TCGA-73-4658 
"OR4P4 WILD-TYPE" "OR4P4 WILD-TYPE" "OR4P4 WILD-TYPE" "OR4P4 WILD-TYPE" 
     TCGA-73-4659      TCGA-73-4662      TCGA-73-4666      TCGA-73-4668 
"OR4P4 WILD-TYPE" "OR4P4 WILD-TYPE" "OR4P4 WILD-TYPE" "OR4P4 WILD-TYPE" 
     TCGA-73-4670      TCGA-73-4675      TCGA-73-4676      TCGA-73-4677 
"OR4P4 WILD-TYPE" "OR4P4 WILD-TYPE" "OR4P4 WILD-TYPE" "OR4P4 WILD-TYPE" 
     TCGA-91-6828      TCGA-91-6829      TCGA-91-6831      TCGA-91-6835 
"OR4P4 WILD-TYPE" "OR4P4 WILD-TYPE" "OR4P4 WILD-TYPE" "OR4P4 WILD-TYPE" 
     TCGA-91-6836 
"OR4P4 WILD-TYPE" 
     TCGA-05-4249      TCGA-05-4250      TCGA-05-4382      TCGA-05-4384 
"OR4P4 WILD-TYPE" "OR4P4 WILD-TYPE"   "OR4P4 MUTATED" "OR4P4 WILD-TYPE" 
     TCGA-05-4390      TCGA-05-4396      TCGA-05-4397      TCGA-05-4398 
"OR4P4 WILD-TYPE" "OR4P4 WILD-TYPE" "OR4P4 WILD-TYPE" "OR4P4 WILD-TYPE" 
     TCGA-05-4402      TCGA-05-4405      TCGA-05-4415      TCGA-05-4417 
"OR4P4 WILD-TYPE" "OR4P4 WILD-TYPE" "OR4P4 WILD-TYPE"   "OR4P4 MUTATED" 
     TCGA-05-4418      TCGA-05-4420      TCGA-05-4424      TCGA-05-4426 
"OR4P4 WILD-TYPE" "OR4P4 WILD-TYPE" "OR4P4 WILD-TYPE" "OR4P4 WILD-TYPE" 
     TCGA-05-4427      TCGA-05-4430      TCGA-05-4432      TCGA-05-4433 
"OR4P4 WILD-TYPE" "OR4P4 WILD-TYPE" "OR4P4 WILD-TYPE" "OR4P4 WILD-TYPE" 
     TCGA-05-4434      TCGA-05-5420      TCGA-05-5423      TCGA-05-5425 
"OR4P4 WILD-TYPE" "OR4P4 WILD-TYPE" "OR4P4 WILD-TYPE" "OR4P4 WILD-TYPE" 
     TCGA-05-5429      TCGA-05-5715      TCGA-35-3615      TCGA-35-4122 
"OR4P4 WILD-TYPE" "OR4P4 WILD-TYPE" "OR4P4 WILD-TYPE" "OR4P4 WILD-TYPE" 
     TCGA-35-4123      TCGA-35-5375      TCGA-38-4625      TCGA-38-4626 
"OR4P4 WILD-TYPE" "OR4P4 WILD-TYPE" "OR4P4 WILD-TYPE" "OR4P4 WILD-TYPE" 
     TCGA-38-4627      TCGA-38-4628      TCGA-38-4629      TCGA-38-4630 
"OR4P4 WILD-TYPE" "OR4P4 WILD-TYPE" "OR4P4 WILD-TYPE" "OR4P4 WILD-TYPE" 
     TCGA-38-4631      TCGA-38-4632      TCGA-38-6178      TCGA-44-2655 
"OR4P4 WILD-TYPE" "OR4P4 WILD-TYPE" "OR4P4 WILD-TYPE"   "OR4P4 MUTATED" 
     TCGA-44-2656      TCGA-44-2657      TCGA-44-2659      TCGA-44-2661 
"OR4P4 WILD-TYPE" "OR4P4 WILD-TYPE" "OR4P4 WILD-TYPE" "OR4P4 WILD-TYPE" 
     TCGA-44-2662      TCGA-44-2665      TCGA-44-2666      TCGA-44-2668 
"OR4P4 WILD-TYPE" "OR4P4 WILD-TYPE" "OR4P4 WILD-TYPE"   "OR4P4 MUTATED" 
     TCGA-44-3396      TCGA-44-3398      TCGA-44-3918      TCGA-44-3919 
"OR4P4 WILD-TYPE" "OR4P4 WILD-TYPE" "OR4P4 WILD-TYPE" "OR4P4 WILD-TYPE" 
     TCGA-44-4112      TCGA-44-5643      TCGA-44-5645      TCGA-44-6144 
"OR4P4 WILD-TYPE" "OR4P4 WILD-TYPE" "OR4P4 WILD-TYPE" "OR4P4 WILD-TYPE" 
     TCGA-44-6145      TCGA-44-6146      TCGA-44-6147      TCGA-44-6148 
"OR4P4 WILD-TYPE" "OR4P4 WILD-TYPE" "OR4P4 WILD-TYPE" "OR4P4 WILD-TYPE" 
     TCGA-44-6774      TCGA-44-6775      TCGA-44-6776      TCGA-44-6777 
"OR4P4 WILD-TYPE" "OR4P4 WILD-TYPE" "OR4P4 WILD-TYPE" "OR4P4 WILD-TYPE" 
     TCGA-44-6778      TCGA-44-6779      TCGA-49-4486      TCGA-49-4487 
"OR4P4 WILD-TYPE" "OR4P4 WILD-TYPE" "OR4P4 WILD-TYPE" "OR4P4 WILD-TYPE" 
     TCGA-49-4488      TCGA-49-4490      TCGA-49-4494      TCGA-49-4501 
"OR4P4 WILD-TYPE" "OR4P4 WILD-TYPE" "OR4P4 WILD-TYPE" "OR4P4 WILD-TYPE" 
     TCGA-49-4505      TCGA-49-4506      TCGA-49-4507      TCGA-49-4510 
"OR4P4 WILD-TYPE" "OR4P4 WILD-TYPE" "OR4P4 WILD-TYPE" "OR4P4 WILD-TYPE" 
     TCGA-49-4512      TCGA-49-4514      TCGA-49-6742      TCGA-49-6743 
"OR4P4 WILD-TYPE" "OR4P4 WILD-TYPE" "OR4P4 WILD-TYPE" "OR4P4 WILD-TYPE" 
     TCGA-49-6744      TCGA-49-6745      TCGA-50-5044      TCGA-50-5045 
  "OR4P4 MUTATED" "OR4P4 WILD-TYPE" "OR4P4 WILD-TYPE" "OR4P4 WILD-TYPE" 
     TCGA-50-5049      TCGA-50-5051      TCGA-50-5055      TCGA-50-5066 
"OR4P4 WILD-TYPE" "OR4P4 WILD-TYPE" "OR4P4 WILD-TYPE" "OR4P4 WILD-TYPE" 
     TCGA-50-5068      TCGA-50-5072      TCGA-50-5930      TCGA-50-5931 
"OR4P4 WILD-TYPE" "OR4P4 WILD-TYPE" "OR4P4 WILD-TYPE" "OR4P4 WILD-TYPE" 
     TCGA-50-5932      TCGA-50-5933      TCGA-50-5935      TCGA-50-5936 
"OR4P4 WILD-TYPE" "OR4P4 WILD-TYPE" "OR4P4 WILD-TYPE" "OR4P4 WILD-TYPE" 
     TCGA-50-5939      TCGA-50-5941      TCGA-50-5942      TCGA-50-5944 
"OR4P4 WILD-TYPE" "OR4P4 WILD-TYPE" "OR4P4 WILD-TYPE" "OR4P4 WILD-TYPE" 
     TCGA-50-5946      TCGA-50-6590      TCGA-50-6591      TCGA-50-6592 
"OR4P4 WILD-TYPE" "OR4P4 WILD-TYPE" "OR4P4 WILD-TYPE" "OR4P4 WILD-TYPE" 
     TCGA-50-6593      TCGA-50-6594      TCGA-50-6595      TCGA-50-6597 
"OR4P4 WILD-TYPE"   "OR4P4 MUTATED" "OR4P4 WILD-TYPE" "OR4P4 WILD-TYPE" 
     TCGA-55-1592      TCGA-55-1594      TCGA-55-1595      TCGA-55-1596 
"OR4P4 WILD-TYPE" "OR4P4 WILD-TYPE" "OR4P4 WILD-TYPE" "OR4P4 WILD-TYPE" 
     TCGA-55-5899      TCGA-55-6543      TCGA-55-6642      TCGA-55-6712 
"OR4P4 WILD-TYPE" "OR4P4 WILD-TYPE" "OR4P4 WILD-TYPE" "OR4P4 WILD-TYPE" 
     TCGA-64-1676      TCGA-64-1677      TCGA-64-1678      TCGA-64-1680 
"OR4P4 WILD-TYPE" "OR4P4 WILD-TYPE" "OR4P4 WILD-TYPE" "OR4P4 WILD-TYPE" 
     TCGA-64-5774      TCGA-64-5775      TCGA-64-5778      TCGA-64-5779 
"OR4P4 WILD-TYPE" "OR4P4 WILD-TYPE" "OR4P4 WILD-TYPE" "OR4P4 WILD-TYPE" 
     TCGA-64-5781      TCGA-64-5815      TCGA-67-3770      TCGA-67-3771 
"OR4P4 WILD-TYPE" "OR4P4 WILD-TYPE" "OR4P4 WILD-TYPE" "OR4P4 WILD-TYPE" 
     TCGA-67-3772      TCGA-67-3773      TCGA-67-3774      TCGA-67-6215 
"OR4P4 WILD-TYPE" "OR4P4 WILD-TYPE" "OR4P4 WILD-TYPE" "OR4P4 WILD-TYPE" 
     TCGA-67-6216      TCGA-67-6217      TCGA-71-6725      TCGA-73-4658 
"OR4P4 WILD-TYPE" "OR4P4 WILD-TYPE" "OR4P4 WILD-TYPE" "OR4P4 WILD-TYPE" 
     TCGA-73-4659      TCGA-73-4662      TCGA-73-4666      TCGA-73-4668 
"OR4P4 WILD-TYPE" "OR4P4 WILD-TYPE" "OR4P4 WILD-TYPE" "OR4P4 WILD-TYPE" 
     TCGA-73-4670      TCGA-73-4675      TCGA-73-4676      TCGA-73-4677 
"OR4P4 WILD-TYPE" "OR4P4 WILD-TYPE" "OR4P4 WILD-TYPE" "OR4P4 WILD-TYPE" 
     TCGA-91-6828      TCGA-91-6829      TCGA-91-6831      TCGA-91-6835 
"OR4P4 WILD-TYPE" "OR4P4 WILD-TYPE" "OR4P4 WILD-TYPE" "OR4P4 WILD-TYPE" 
     TCGA-91-6836 
"OR4P4 WILD-TYPE" 
[1] "hr=" "1.1"
D214V2, continuous
D214V3, binary
[1] "tbl2"
                 cls
clus              [,1] [,2]
  OR4P4 MUTATED      4    2
  OR4P4 WILD-TYPE   89   77
        clus
vv       OR4P4 MUTATED OR4P4 WILD-TYPE
  FEMALE             4              89
  MALE               2              77
D214V4, continuous
D214V5, multiclass
D214V6, multiclass
    clus
vv   OR4P4 MUTATED OR4P4 WILD-TYPE
  T1             1              40
  T2             4             104
  T3             1              13
  T4             0               8
D214V7, multiclass
       clus
vv      OR4P4 MUTATED OR4P4 WILD-TYPE
  N0                4              91
  N1                1              36
  N2+N3             1              34
D214V8, multiclass
    clus
vv   OR4P4 MUTATED OR4P4 WILD-TYPE
  M0             5             132
  M1             0               9
  MX             1              21
D214V9, multiclass
     clus
vv    OR4P4 MUTATED OR4P4 WILD-TYPE
  I               4              84
  II              1              32
  III             1              38
  IV              0               9
D214V10, binary
[1] "tbl2"
                 cls
clus              [,1] [,2]
  OR4P4 MUTATED      0    6
  OR4P4 WILD-TYPE   16  150
     clus
vv    OR4P4 MUTATED OR4P4 WILD-TYPE
  NO              0              16
  YES             6             150
D214V11, continuous
D214V12, continuous
D214V13, multiclass
                                             clus
vv                                            OR4P4 MUTATED OR4P4 WILD-TYPE
  CURRENT REFORMED SMOKER FOR < OR = 15 YEARS             5              57
  CURRENT REFORMED SMOKER FOR > 15 YEARS                  1              45
  CURRENT SMOKER                                          0              28
  LIFELONG NON-SMOKER                                     0              24
D214V14, continuous

Clustering(215) Variable = CD226 MUTATION ANALYSIS
D215V1, survival
                 sevent
clus2              0  1
  CD226 MUTATED    4  3
  CD226 WILD-TYPE 95 47
  CD226 MUTATED CD226 WILD-TYPE 
              7             142 
  CD226 MUTATED CD226 WILD-TYPE 
              3              47 
$`CD226 MUTATED`
TCGA-05-4396 TCGA-05-4415 TCGA-35-4122 TCGA-44-6778 TCGA-49-6743 TCGA-50-5935 
        9.96         2.96         7.36        36.49        12.13        21.47 
TCGA-73-4666 
       20.28 

$`CD226 WILD-TYPE`
TCGA-05-4249 TCGA-05-4250 TCGA-05-4382 TCGA-05-4384 TCGA-05-4390 TCGA-05-4397 
       38.07         3.98        19.92        14.01        37.02        24.03 
TCGA-05-4398 TCGA-05-4402 TCGA-05-4405 TCGA-05-4417 TCGA-05-4418 TCGA-05-4420 
       47.05         8.02        20.05        14.93         8.98        29.95 
TCGA-05-4424 TCGA-05-4426 TCGA-05-4427 TCGA-05-4430 TCGA-05-4432 TCGA-05-4433 
       30.02        26.01        26.01        25.02        25.02        24.00 
TCGA-05-4434 TCGA-05-5420 TCGA-05-5423 TCGA-05-5425 TCGA-05-5429 TCGA-05-5715 
       15.02         1.02         4.96         2.96         0.99         2.04 
TCGA-35-3615 TCGA-35-4123 TCGA-35-5375 TCGA-38-4625 TCGA-38-4626 TCGA-38-4627 
        0.46         5.95         8.68        47.61        85.32        37.71 
TCGA-38-4628 TCGA-38-4629 TCGA-38-4630 TCGA-38-4631 TCGA-38-4632 TCGA-38-6178 
       49.02        28.37        35.28        11.64        44.61         5.19 
TCGA-44-2655 TCGA-44-2656 TCGA-44-2657 TCGA-44-2659 TCGA-44-2661 TCGA-44-2662 
       18.87        19.10        13.15        17.39         3.39        15.78 
TCGA-44-2665 TCGA-44-2666 TCGA-44-2668 TCGA-44-3396 TCGA-44-3398 TCGA-44-3918 
       13.15         3.19         8.09        10.22         8.32         6.44 
TCGA-44-3919 TCGA-44-4112 TCGA-44-5643 TCGA-44-5645 TCGA-44-6144 TCGA-44-6145 
        6.21         4.60         3.48         6.84         0.30         3.35 
TCGA-44-6146 TCGA-44-6147 TCGA-44-6148 TCGA-44-6774 TCGA-44-6775 TCGA-44-6776 
        9.93         7.76         3.12         5.42         2.70        63.72 
TCGA-44-6777 TCGA-44-6779 TCGA-49-4486 TCGA-49-4487 TCGA-49-4488 TCGA-49-4490 
       32.45        16.41        76.21        28.11        28.57        12.66 
TCGA-49-4494 TCGA-49-4501 TCGA-49-4505 TCGA-49-4506 TCGA-49-4507 TCGA-49-4510 
       35.54        46.72        14.07        32.84         8.81        29.46 
TCGA-49-4512 TCGA-49-4514 TCGA-49-6742 TCGA-49-6744 TCGA-49-6745 TCGA-50-5044 
       29.75        43.20        15.02        12.99         4.93        20.48 
TCGA-50-5045 TCGA-50-5049 TCGA-50-5051 TCGA-50-5055 TCGA-50-5066 TCGA-50-5068 
       71.47        48.82        14.96        25.81         9.76        49.28 
TCGA-50-5072 TCGA-50-5930 TCGA-50-5931 TCGA-50-5932 TCGA-50-5933 TCGA-50-5936 
        8.05         9.27         8.78        35.87        77.88         8.45 
TCGA-50-5939 TCGA-50-5941 TCGA-50-5942 TCGA-50-5944 TCGA-50-5946 TCGA-50-6590 
       15.12         9.37         4.44        12.26        11.47        42.31 
TCGA-50-6591 TCGA-50-6592 TCGA-50-6593 TCGA-50-6594 TCGA-50-6595 TCGA-50-6597 
        3.88        25.51        11.05        12.16         6.21        33.37 
TCGA-55-1592 TCGA-55-1594 TCGA-55-1595 TCGA-55-1596 TCGA-55-5899 TCGA-55-6543 
       23.05        38.73        48.62        45.17         2.86         0.07 
TCGA-55-6642 TCGA-55-6712 TCGA-64-1676 TCGA-64-1677 TCGA-64-1678 TCGA-64-1680 
       32.61         0.79        56.81        20.65        39.09        37.02 
TCGA-64-5774 TCGA-64-5775 TCGA-64-5778 TCGA-64-5779 TCGA-64-5781 TCGA-64-5815 
       83.84         0.10        30.44        16.67        39.52         7.33 
TCGA-67-3770 TCGA-67-3771 TCGA-67-3772 TCGA-67-3773 TCGA-67-3774 TCGA-67-6215 
        0.99         1.97         0.59         2.04         0.59         0.89 
TCGA-67-6216 TCGA-67-6217 TCGA-71-6725 TCGA-73-4658 TCGA-73-4659 TCGA-73-4662 
        0.69        13.87         2.01        52.57        23.38        29.95 
TCGA-73-4668 TCGA-73-4670 TCGA-73-4675 TCGA-73-4676 TCGA-73-4677 TCGA-91-6828 
       15.35         0.46         1.32         4.01         1.25         1.22 
TCGA-91-6829 TCGA-91-6831 TCGA-91-6835 TCGA-91-6836 
       41.33         1.28         1.15         0.36 

  CD226 MUTATED CD226 WILD-TYPE 
           2.96            0.07 
  CD226 MUTATED CD226 WILD-TYPE 
          36.49           85.32 
  CD226 MUTATED CD226 WILD-TYPE 
          12.13           13.94 
[1] "3.0 - 36.5 (12.1)" "0.1 - 85.3 (13.9)"
     TCGA-05-4249      TCGA-05-4250      TCGA-05-4382      TCGA-05-4384 
"CD226 WILD-TYPE" "CD226 WILD-TYPE" "CD226 WILD-TYPE" "CD226 WILD-TYPE" 
     TCGA-05-4390      TCGA-05-4396      TCGA-05-4397      TCGA-05-4398 
"CD226 WILD-TYPE"   "CD226 MUTATED" "CD226 WILD-TYPE" "CD226 WILD-TYPE" 
     TCGA-05-4402      TCGA-05-4405      TCGA-05-4415      TCGA-05-4417 
"CD226 WILD-TYPE" "CD226 WILD-TYPE"   "CD226 MUTATED" "CD226 WILD-TYPE" 
     TCGA-05-4418      TCGA-05-4420      TCGA-05-4424      TCGA-05-4426 
"CD226 WILD-TYPE" "CD226 WILD-TYPE" "CD226 WILD-TYPE" "CD226 WILD-TYPE" 
     TCGA-05-4427      TCGA-05-4430      TCGA-05-4432      TCGA-05-4433 
"CD226 WILD-TYPE" "CD226 WILD-TYPE" "CD226 WILD-TYPE" "CD226 WILD-TYPE" 
     TCGA-05-4434      TCGA-05-5420      TCGA-05-5423      TCGA-05-5425 
"CD226 WILD-TYPE" "CD226 WILD-TYPE" "CD226 WILD-TYPE" "CD226 WILD-TYPE" 
     TCGA-05-5429      TCGA-05-5715      TCGA-35-3615      TCGA-35-4122 
"CD226 WILD-TYPE" "CD226 WILD-TYPE" "CD226 WILD-TYPE"   "CD226 MUTATED" 
     TCGA-35-4123      TCGA-35-5375      TCGA-38-4625      TCGA-38-4626 
"CD226 WILD-TYPE" "CD226 WILD-TYPE" "CD226 WILD-TYPE" "CD226 WILD-TYPE" 
     TCGA-38-4627      TCGA-38-4628      TCGA-38-4629      TCGA-38-4630 
"CD226 WILD-TYPE" "CD226 WILD-TYPE" "CD226 WILD-TYPE" "CD226 WILD-TYPE" 
     TCGA-38-4631      TCGA-38-4632      TCGA-38-6178      TCGA-44-2655 
"CD226 WILD-TYPE" "CD226 WILD-TYPE" "CD226 WILD-TYPE" "CD226 WILD-TYPE" 
     TCGA-44-2656      TCGA-44-2657      TCGA-44-2659      TCGA-44-2661 
"CD226 WILD-TYPE" "CD226 WILD-TYPE" "CD226 WILD-TYPE" "CD226 WILD-TYPE" 
     TCGA-44-2662      TCGA-44-2665      TCGA-44-2666      TCGA-44-2668 
"CD226 WILD-TYPE" "CD226 WILD-TYPE" "CD226 WILD-TYPE" "CD226 WILD-TYPE" 
     TCGA-44-3396      TCGA-44-3398      TCGA-44-3918      TCGA-44-3919 
"CD226 WILD-TYPE" "CD226 WILD-TYPE" "CD226 WILD-TYPE" "CD226 WILD-TYPE" 
     TCGA-44-4112      TCGA-44-5643      TCGA-44-5645      TCGA-44-6144 
"CD226 WILD-TYPE" "CD226 WILD-TYPE" "CD226 WILD-TYPE" "CD226 WILD-TYPE" 
     TCGA-44-6145      TCGA-44-6146      TCGA-44-6147      TCGA-44-6148 
"CD226 WILD-TYPE" "CD226 WILD-TYPE" "CD226 WILD-TYPE" "CD226 WILD-TYPE" 
     TCGA-44-6774      TCGA-44-6775      TCGA-44-6776      TCGA-44-6777 
"CD226 WILD-TYPE" "CD226 WILD-TYPE" "CD226 WILD-TYPE" "CD226 WILD-TYPE" 
     TCGA-44-6778      TCGA-44-6779      TCGA-49-4486      TCGA-49-4487 
  "CD226 MUTATED" "CD226 WILD-TYPE" "CD226 WILD-TYPE" "CD226 WILD-TYPE" 
     TCGA-49-4488      TCGA-49-4490      TCGA-49-4494      TCGA-49-4501 
"CD226 WILD-TYPE" "CD226 WILD-TYPE" "CD226 WILD-TYPE" "CD226 WILD-TYPE" 
     TCGA-49-4505      TCGA-49-4506      TCGA-49-4507      TCGA-49-4510 
"CD226 WILD-TYPE" "CD226 WILD-TYPE" "CD226 WILD-TYPE" "CD226 WILD-TYPE" 
     TCGA-49-4512      TCGA-49-4514      TCGA-49-6742      TCGA-49-6743 
"CD226 WILD-TYPE" "CD226 WILD-TYPE" "CD226 WILD-TYPE"   "CD226 MUTATED" 
     TCGA-49-6744      TCGA-49-6745      TCGA-50-5044      TCGA-50-5045 
"CD226 WILD-TYPE" "CD226 WILD-TYPE" "CD226 WILD-TYPE" "CD226 WILD-TYPE" 
     TCGA-50-5049      TCGA-50-5051      TCGA-50-5055      TCGA-50-5066 
"CD226 WILD-TYPE" "CD226 WILD-TYPE" "CD226 WILD-TYPE" "CD226 WILD-TYPE" 
     TCGA-50-5068      TCGA-50-5072      TCGA-50-5930      TCGA-50-5931 
"CD226 WILD-TYPE" "CD226 WILD-TYPE" "CD226 WILD-TYPE" "CD226 WILD-TYPE" 
     TCGA-50-5932      TCGA-50-5933      TCGA-50-5935      TCGA-50-5936 
"CD226 WILD-TYPE" "CD226 WILD-TYPE"   "CD226 MUTATED" "CD226 WILD-TYPE" 
     TCGA-50-5939      TCGA-50-5941      TCGA-50-5942      TCGA-50-5944 
"CD226 WILD-TYPE" "CD226 WILD-TYPE" "CD226 WILD-TYPE" "CD226 WILD-TYPE" 
     TCGA-50-5946      TCGA-50-6590      TCGA-50-6591      TCGA-50-6592 
"CD226 WILD-TYPE" "CD226 WILD-TYPE" "CD226 WILD-TYPE" "CD226 WILD-TYPE" 
     TCGA-50-6593      TCGA-50-6594      TCGA-50-6595      TCGA-50-6597 
"CD226 WILD-TYPE" "CD226 WILD-TYPE" "CD226 WILD-TYPE" "CD226 WILD-TYPE" 
     TCGA-55-1592      TCGA-55-1594      TCGA-55-1595      TCGA-55-1596 
"CD226 WILD-TYPE" "CD226 WILD-TYPE" "CD226 WILD-TYPE" "CD226 WILD-TYPE" 
     TCGA-55-5899      TCGA-55-6543      TCGA-55-6642      TCGA-55-6712 
"CD226 WILD-TYPE" "CD226 WILD-TYPE" "CD226 WILD-TYPE" "CD226 WILD-TYPE" 
     TCGA-64-1676      TCGA-64-1677      TCGA-64-1678      TCGA-64-1680 
"CD226 WILD-TYPE" "CD226 WILD-TYPE" "CD226 WILD-TYPE" "CD226 WILD-TYPE" 
     TCGA-64-5774      TCGA-64-5775      TCGA-64-5778      TCGA-64-5779 
"CD226 WILD-TYPE" "CD226 WILD-TYPE" "CD226 WILD-TYPE" "CD226 WILD-TYPE" 
     TCGA-64-5781      TCGA-64-5815      TCGA-67-3770      TCGA-67-3771 
"CD226 WILD-TYPE" "CD226 WILD-TYPE" "CD226 WILD-TYPE" "CD226 WILD-TYPE" 
     TCGA-67-3772      TCGA-67-3773      TCGA-67-3774      TCGA-67-6215 
"CD226 WILD-TYPE" "CD226 WILD-TYPE" "CD226 WILD-TYPE" "CD226 WILD-TYPE" 
     TCGA-67-6216      TCGA-67-6217      TCGA-71-6725      TCGA-73-4658 
"CD226 WILD-TYPE" "CD226 WILD-TYPE" "CD226 WILD-TYPE" "CD226 WILD-TYPE" 
     TCGA-73-4659      TCGA-73-4662      TCGA-73-4666      TCGA-73-4668 
"CD226 WILD-TYPE" "CD226 WILD-TYPE"   "CD226 MUTATED" "CD226 WILD-TYPE" 
     TCGA-73-4670      TCGA-73-4675      TCGA-73-4676      TCGA-73-4677 
"CD226 WILD-TYPE" "CD226 WILD-TYPE" "CD226 WILD-TYPE" "CD226 WILD-TYPE" 
     TCGA-91-6828      TCGA-91-6829      TCGA-91-6831      TCGA-91-6835 
"CD226 WILD-TYPE" "CD226 WILD-TYPE" "CD226 WILD-TYPE" "CD226 WILD-TYPE" 
     TCGA-91-6836 
"CD226 WILD-TYPE" 
     TCGA-05-4249      TCGA-05-4250      TCGA-05-4382      TCGA-05-4384 
"CD226 WILD-TYPE" "CD226 WILD-TYPE" "CD226 WILD-TYPE" "CD226 WILD-TYPE" 
     TCGA-05-4390      TCGA-05-4396      TCGA-05-4397      TCGA-05-4398 
"CD226 WILD-TYPE"   "CD226 MUTATED" "CD226 WILD-TYPE" "CD226 WILD-TYPE" 
     TCGA-05-4402      TCGA-05-4405      TCGA-05-4415      TCGA-05-4417 
"CD226 WILD-TYPE" "CD226 WILD-TYPE"   "CD226 MUTATED" "CD226 WILD-TYPE" 
     TCGA-05-4418      TCGA-05-4420      TCGA-05-4424      TCGA-05-4426 
"CD226 WILD-TYPE" "CD226 WILD-TYPE" "CD226 WILD-TYPE" "CD226 WILD-TYPE" 
     TCGA-05-4427      TCGA-05-4430      TCGA-05-4432      TCGA-05-4433 
"CD226 WILD-TYPE" "CD226 WILD-TYPE" "CD226 WILD-TYPE" "CD226 WILD-TYPE" 
     TCGA-05-4434      TCGA-05-5420      TCGA-05-5423      TCGA-05-5425 
"CD226 WILD-TYPE" "CD226 WILD-TYPE" "CD226 WILD-TYPE" "CD226 WILD-TYPE" 
     TCGA-05-5429      TCGA-05-5715      TCGA-35-3615      TCGA-35-4122 
"CD226 WILD-TYPE" "CD226 WILD-TYPE" "CD226 WILD-TYPE"   "CD226 MUTATED" 
     TCGA-35-4123      TCGA-35-5375      TCGA-38-4625      TCGA-38-4626 
"CD226 WILD-TYPE" "CD226 WILD-TYPE" "CD226 WILD-TYPE" "CD226 WILD-TYPE" 
     TCGA-38-4627      TCGA-38-4628      TCGA-38-4629      TCGA-38-4630 
"CD226 WILD-TYPE" "CD226 WILD-TYPE" "CD226 WILD-TYPE" "CD226 WILD-TYPE" 
     TCGA-38-4631      TCGA-38-4632      TCGA-38-6178      TCGA-44-2655 
"CD226 WILD-TYPE" "CD226 WILD-TYPE" "CD226 WILD-TYPE" "CD226 WILD-TYPE" 
     TCGA-44-2656      TCGA-44-2657      TCGA-44-2659      TCGA-44-2661 
"CD226 WILD-TYPE" "CD226 WILD-TYPE" "CD226 WILD-TYPE" "CD226 WILD-TYPE" 
     TCGA-44-2662      TCGA-44-2665      TCGA-44-2666      TCGA-44-2668 
"CD226 WILD-TYPE" "CD226 WILD-TYPE" "CD226 WILD-TYPE" "CD226 WILD-TYPE" 
     TCGA-44-3396      TCGA-44-3398      TCGA-44-3918      TCGA-44-3919 
"CD226 WILD-TYPE" "CD226 WILD-TYPE" "CD226 WILD-TYPE" "CD226 WILD-TYPE" 
     TCGA-44-4112      TCGA-44-5643      TCGA-44-5645      TCGA-44-6144 
"CD226 WILD-TYPE" "CD226 WILD-TYPE" "CD226 WILD-TYPE" "CD226 WILD-TYPE" 
     TCGA-44-6145      TCGA-44-6146      TCGA-44-6147      TCGA-44-6148 
"CD226 WILD-TYPE" "CD226 WILD-TYPE" "CD226 WILD-TYPE" "CD226 WILD-TYPE" 
     TCGA-44-6774      TCGA-44-6775      TCGA-44-6776      TCGA-44-6777 
"CD226 WILD-TYPE" "CD226 WILD-TYPE" "CD226 WILD-TYPE" "CD226 WILD-TYPE" 
     TCGA-44-6778      TCGA-44-6779      TCGA-49-4486      TCGA-49-4487 
  "CD226 MUTATED" "CD226 WILD-TYPE" "CD226 WILD-TYPE" "CD226 WILD-TYPE" 
     TCGA-49-4488      TCGA-49-4490      TCGA-49-4494      TCGA-49-4501 
"CD226 WILD-TYPE" "CD226 WILD-TYPE" "CD226 WILD-TYPE" "CD226 WILD-TYPE" 
     TCGA-49-4505      TCGA-49-4506      TCGA-49-4507      TCGA-49-4510 
"CD226 WILD-TYPE" "CD226 WILD-TYPE" "CD226 WILD-TYPE" "CD226 WILD-TYPE" 
     TCGA-49-4512      TCGA-49-4514      TCGA-49-6742      TCGA-49-6743 
"CD226 WILD-TYPE" "CD226 WILD-TYPE" "CD226 WILD-TYPE"   "CD226 MUTATED" 
     TCGA-49-6744      TCGA-49-6745      TCGA-50-5044      TCGA-50-5045 
"CD226 WILD-TYPE" "CD226 WILD-TYPE" "CD226 WILD-TYPE" "CD226 WILD-TYPE" 
     TCGA-50-5049      TCGA-50-5051      TCGA-50-5055      TCGA-50-5066 
"CD226 WILD-TYPE" "CD226 WILD-TYPE" "CD226 WILD-TYPE" "CD226 WILD-TYPE" 
     TCGA-50-5068      TCGA-50-5072      TCGA-50-5930      TCGA-50-5931 
"CD226 WILD-TYPE" "CD226 WILD-TYPE" "CD226 WILD-TYPE" "CD226 WILD-TYPE" 
     TCGA-50-5932      TCGA-50-5933      TCGA-50-5935      TCGA-50-5936 
"CD226 WILD-TYPE" "CD226 WILD-TYPE"   "CD226 MUTATED" "CD226 WILD-TYPE" 
     TCGA-50-5939      TCGA-50-5941      TCGA-50-5942      TCGA-50-5944 
"CD226 WILD-TYPE" "CD226 WILD-TYPE" "CD226 WILD-TYPE" "CD226 WILD-TYPE" 
     TCGA-50-5946      TCGA-50-6590      TCGA-50-6591      TCGA-50-6592 
"CD226 WILD-TYPE" "CD226 WILD-TYPE" "CD226 WILD-TYPE" "CD226 WILD-TYPE" 
     TCGA-50-6593      TCGA-50-6594      TCGA-50-6595      TCGA-50-6597 
"CD226 WILD-TYPE" "CD226 WILD-TYPE" "CD226 WILD-TYPE" "CD226 WILD-TYPE" 
     TCGA-55-1592      TCGA-55-1594      TCGA-55-1595      TCGA-55-1596 
"CD226 WILD-TYPE" "CD226 WILD-TYPE" "CD226 WILD-TYPE" "CD226 WILD-TYPE" 
     TCGA-55-5899      TCGA-55-6543      TCGA-55-6642      TCGA-55-6712 
"CD226 WILD-TYPE" "CD226 WILD-TYPE" "CD226 WILD-TYPE" "CD226 WILD-TYPE" 
     TCGA-64-1676      TCGA-64-1677      TCGA-64-1678      TCGA-64-1680 
"CD226 WILD-TYPE" "CD226 WILD-TYPE" "CD226 WILD-TYPE" "CD226 WILD-TYPE" 
     TCGA-64-5774      TCGA-64-5775      TCGA-64-5778      TCGA-64-5779 
"CD226 WILD-TYPE" "CD226 WILD-TYPE" "CD226 WILD-TYPE" "CD226 WILD-TYPE" 
     TCGA-64-5781      TCGA-64-5815      TCGA-67-3770      TCGA-67-3771 
"CD226 WILD-TYPE" "CD226 WILD-TYPE" "CD226 WILD-TYPE" "CD226 WILD-TYPE" 
     TCGA-67-3772      TCGA-67-3773      TCGA-67-3774      TCGA-67-6215 
"CD226 WILD-TYPE" "CD226 WILD-TYPE" "CD226 WILD-TYPE" "CD226 WILD-TYPE" 
     TCGA-67-6216      TCGA-67-6217      TCGA-71-6725      TCGA-73-4658 
"CD226 WILD-TYPE" "CD226 WILD-TYPE" "CD226 WILD-TYPE" "CD226 WILD-TYPE" 
     TCGA-73-4659      TCGA-73-4662      TCGA-73-4666      TCGA-73-4668 
"CD226 WILD-TYPE" "CD226 WILD-TYPE"   "CD226 MUTATED" "CD226 WILD-TYPE" 
     TCGA-73-4670      TCGA-73-4675      TCGA-73-4676      TCGA-73-4677 
"CD226 WILD-TYPE" "CD226 WILD-TYPE" "CD226 WILD-TYPE" "CD226 WILD-TYPE" 
     TCGA-91-6828      TCGA-91-6829      TCGA-91-6831      TCGA-91-6835 
"CD226 WILD-TYPE" "CD226 WILD-TYPE" "CD226 WILD-TYPE" "CD226 WILD-TYPE" 
     TCGA-91-6836 
"CD226 WILD-TYPE" 
     TCGA-05-4249      TCGA-05-4250      TCGA-05-4382      TCGA-05-4384 
"CD226 WILD-TYPE" "CD226 WILD-TYPE" "CD226 WILD-TYPE" "CD226 WILD-TYPE" 
     TCGA-05-4390      TCGA-05-4396      TCGA-05-4397      TCGA-05-4398 
"CD226 WILD-TYPE"   "CD226 MUTATED" "CD226 WILD-TYPE" "CD226 WILD-TYPE" 
     TCGA-05-4402      TCGA-05-4405      TCGA-05-4415      TCGA-05-4417 
"CD226 WILD-TYPE" "CD226 WILD-TYPE"   "CD226 MUTATED" "CD226 WILD-TYPE" 
     TCGA-05-4418      TCGA-05-4420      TCGA-05-4424      TCGA-05-4426 
"CD226 WILD-TYPE" "CD226 WILD-TYPE" "CD226 WILD-TYPE" "CD226 WILD-TYPE" 
     TCGA-05-4427      TCGA-05-4430      TCGA-05-4432      TCGA-05-4433 
"CD226 WILD-TYPE" "CD226 WILD-TYPE" "CD226 WILD-TYPE" "CD226 WILD-TYPE" 
     TCGA-05-4434      TCGA-05-5420      TCGA-05-5423      TCGA-05-5425 
"CD226 WILD-TYPE" "CD226 WILD-TYPE" "CD226 WILD-TYPE" "CD226 WILD-TYPE" 
     TCGA-05-5429      TCGA-05-5715      TCGA-35-3615      TCGA-35-4122 
"CD226 WILD-TYPE" "CD226 WILD-TYPE" "CD226 WILD-TYPE"   "CD226 MUTATED" 
     TCGA-35-4123      TCGA-35-5375      TCGA-38-4625      TCGA-38-4626 
"CD226 WILD-TYPE" "CD226 WILD-TYPE" "CD226 WILD-TYPE" "CD226 WILD-TYPE" 
     TCGA-38-4627      TCGA-38-4628      TCGA-38-4629      TCGA-38-4630 
"CD226 WILD-TYPE" "CD226 WILD-TYPE" "CD226 WILD-TYPE" "CD226 WILD-TYPE" 
     TCGA-38-4631      TCGA-38-4632      TCGA-38-6178      TCGA-44-2655 
"CD226 WILD-TYPE" "CD226 WILD-TYPE" "CD226 WILD-TYPE" "CD226 WILD-TYPE" 
     TCGA-44-2656      TCGA-44-2657      TCGA-44-2659      TCGA-44-2661 
"CD226 WILD-TYPE" "CD226 WILD-TYPE" "CD226 WILD-TYPE" "CD226 WILD-TYPE" 
     TCGA-44-2662      TCGA-44-2665      TCGA-44-2666      TCGA-44-2668 
"CD226 WILD-TYPE" "CD226 WILD-TYPE" "CD226 WILD-TYPE" "CD226 WILD-TYPE" 
     TCGA-44-3396      TCGA-44-3398      TCGA-44-3918      TCGA-44-3919 
"CD226 WILD-TYPE" "CD226 WILD-TYPE" "CD226 WILD-TYPE" "CD226 WILD-TYPE" 
     TCGA-44-4112      TCGA-44-5643      TCGA-44-5645      TCGA-44-6144 
"CD226 WILD-TYPE" "CD226 WILD-TYPE" "CD226 WILD-TYPE" "CD226 WILD-TYPE" 
     TCGA-44-6145      TCGA-44-6146      TCGA-44-6147      TCGA-44-6148 
"CD226 WILD-TYPE" "CD226 WILD-TYPE" "CD226 WILD-TYPE" "CD226 WILD-TYPE" 
     TCGA-44-6774      TCGA-44-6775      TCGA-44-6776      TCGA-44-6777 
"CD226 WILD-TYPE" "CD226 WILD-TYPE" "CD226 WILD-TYPE" "CD226 WILD-TYPE" 
     TCGA-44-6778      TCGA-44-6779      TCGA-49-4486      TCGA-49-4487 
  "CD226 MUTATED" "CD226 WILD-TYPE" "CD226 WILD-TYPE" "CD226 WILD-TYPE" 
     TCGA-49-4488      TCGA-49-4490      TCGA-49-4494      TCGA-49-4501 
"CD226 WILD-TYPE" "CD226 WILD-TYPE" "CD226 WILD-TYPE" "CD226 WILD-TYPE" 
     TCGA-49-4505      TCGA-49-4506      TCGA-49-4507      TCGA-49-4510 
"CD226 WILD-TYPE" "CD226 WILD-TYPE" "CD226 WILD-TYPE" "CD226 WILD-TYPE" 
     TCGA-49-4512      TCGA-49-4514      TCGA-49-6742      TCGA-49-6743 
"CD226 WILD-TYPE" "CD226 WILD-TYPE" "CD226 WILD-TYPE"   "CD226 MUTATED" 
     TCGA-49-6744      TCGA-49-6745      TCGA-50-5044      TCGA-50-5045 
"CD226 WILD-TYPE" "CD226 WILD-TYPE" "CD226 WILD-TYPE" "CD226 WILD-TYPE" 
     TCGA-50-5049      TCGA-50-5051      TCGA-50-5055      TCGA-50-5066 
"CD226 WILD-TYPE" "CD226 WILD-TYPE" "CD226 WILD-TYPE" "CD226 WILD-TYPE" 
     TCGA-50-5068      TCGA-50-5072      TCGA-50-5930      TCGA-50-5931 
"CD226 WILD-TYPE" "CD226 WILD-TYPE" "CD226 WILD-TYPE" "CD226 WILD-TYPE" 
     TCGA-50-5932      TCGA-50-5933      TCGA-50-5935      TCGA-50-5936 
"CD226 WILD-TYPE" "CD226 WILD-TYPE"   "CD226 MUTATED" "CD226 WILD-TYPE" 
     TCGA-50-5939      TCGA-50-5941      TCGA-50-5942      TCGA-50-5944 
"CD226 WILD-TYPE" "CD226 WILD-TYPE" "CD226 WILD-TYPE" "CD226 WILD-TYPE" 
     TCGA-50-5946      TCGA-50-6590      TCGA-50-6591      TCGA-50-6592 
"CD226 WILD-TYPE" "CD226 WILD-TYPE" "CD226 WILD-TYPE" "CD226 WILD-TYPE" 
     TCGA-50-6593      TCGA-50-6594      TCGA-50-6595      TCGA-50-6597 
"CD226 WILD-TYPE" "CD226 WILD-TYPE" "CD226 WILD-TYPE" "CD226 WILD-TYPE" 
     TCGA-55-1592      TCGA-55-1594      TCGA-55-1595      TCGA-55-1596 
"CD226 WILD-TYPE" "CD226 WILD-TYPE" "CD226 WILD-TYPE" "CD226 WILD-TYPE" 
     TCGA-55-5899      TCGA-55-6543      TCGA-55-6642      TCGA-55-6712 
"CD226 WILD-TYPE" "CD226 WILD-TYPE" "CD226 WILD-TYPE" "CD226 WILD-TYPE" 
     TCGA-64-1676      TCGA-64-1677      TCGA-64-1678      TCGA-64-1680 
"CD226 WILD-TYPE" "CD226 WILD-TYPE" "CD226 WILD-TYPE" "CD226 WILD-TYPE" 
     TCGA-64-5774      TCGA-64-5775      TCGA-64-5778      TCGA-64-5779 
"CD226 WILD-TYPE" "CD226 WILD-TYPE" "CD226 WILD-TYPE" "CD226 WILD-TYPE" 
     TCGA-64-5781      TCGA-64-5815      TCGA-67-3770      TCGA-67-3771 
"CD226 WILD-TYPE" "CD226 WILD-TYPE" "CD226 WILD-TYPE" "CD226 WILD-TYPE" 
     TCGA-67-3772      TCGA-67-3773      TCGA-67-3774      TCGA-67-6215 
"CD226 WILD-TYPE" "CD226 WILD-TYPE" "CD226 WILD-TYPE" "CD226 WILD-TYPE" 
     TCGA-67-6216      TCGA-67-6217      TCGA-71-6725      TCGA-73-4658 
"CD226 WILD-TYPE" "CD226 WILD-TYPE" "CD226 WILD-TYPE" "CD226 WILD-TYPE" 
     TCGA-73-4659      TCGA-73-4662      TCGA-73-4666      TCGA-73-4668 
"CD226 WILD-TYPE" "CD226 WILD-TYPE"   "CD226 MUTATED" "CD226 WILD-TYPE" 
     TCGA-73-4670      TCGA-73-4675      TCGA-73-4676      TCGA-73-4677 
"CD226 WILD-TYPE" "CD226 WILD-TYPE" "CD226 WILD-TYPE" "CD226 WILD-TYPE" 
     TCGA-91-6828      TCGA-91-6829      TCGA-91-6831      TCGA-91-6835 
"CD226 WILD-TYPE" "CD226 WILD-TYPE" "CD226 WILD-TYPE" "CD226 WILD-TYPE" 
     TCGA-91-6836 
"CD226 WILD-TYPE" 
[1] "hr=" "2"  
D215V2, continuous
D215V3, binary
[1] "tbl2"
                 cls
clus              [,1] [,2]
  CD226 MUTATED      3    4
  CD226 WILD-TYPE   90   75
        clus
vv       CD226 MUTATED CD226 WILD-TYPE
  FEMALE             3              90
  MALE               4              75
D215V4, continuous
[1] "Remove cluster labels:" "CD226 MUTATED"         
clus
  CD226 MUTATED CD226 WILD-TYPE 
              2              10 
     TCGA-35-4123      TCGA-35-5375      TCGA-64-1677      TCGA-64-5778 
"CD226 WILD-TYPE" "CD226 WILD-TYPE" "CD226 WILD-TYPE" "CD226 WILD-TYPE" 
     TCGA-71-6725      TCGA-73-4659      TCGA-73-4662      TCGA-73-4668 
"CD226 WILD-TYPE" "CD226 WILD-TYPE" "CD226 WILD-TYPE" "CD226 WILD-TYPE" 
     TCGA-73-4676      TCGA-75-5122 
"CD226 WILD-TYPE" "CD226 WILD-TYPE" 
D215V5, multiclass
D215V6, multiclass
    clus
vv   CD226 MUTATED CD226 WILD-TYPE
  T1             5              36
  T2             0             108
  T3             0              14
  T4             2               6
D215V7, multiclass
       clus
vv      CD226 MUTATED CD226 WILD-TYPE
  N0                4              91
  N1                1              36
  N2+N3             2              33
D215V8, multiclass
    clus
vv   CD226 MUTATED CD226 WILD-TYPE
  M0             4             133
  M1             1               8
  MX             2              20
D215V9, multiclass
     clus
vv    CD226 MUTATED CD226 WILD-TYPE
  I               3              85
  II              0              33
  III             3              36
  IV              1               8
D215V10, binary
[1] "tbl2"
                 cls
clus              [,1] [,2]
  CD226 MUTATED      2    5
  CD226 WILD-TYPE   14  151
     clus
vv    CD226 MUTATED CD226 WILD-TYPE
  NO              2              14
  YES             5             151
D215V11, continuous
D215V12, continuous
D215V13, multiclass
                                             clus
vv                                            CD226 MUTATED CD226 WILD-TYPE
  CURRENT REFORMED SMOKER FOR < OR = 15 YEARS             5              57
  CURRENT REFORMED SMOKER FOR > 15 YEARS                  1              45
  CURRENT SMOKER                                          0              28
  LIFELONG NON-SMOKER                                     0              24
D215V14, continuous

Clustering(216) Variable = CRNN MUTATION ANALYSIS
D216V1, survival
                sevent
clus2             0  1
  CRNN MUTATED    4  4
  CRNN WILD-TYPE 95 46
  CRNN MUTATED CRNN WILD-TYPE 
             8            141 
  CRNN MUTATED CRNN WILD-TYPE 
             4             46 
$`CRNN MUTATED`
TCGA-05-4250 TCGA-05-4390 TCGA-05-4396 TCGA-05-4424 TCGA-49-4487 TCGA-49-4490 
        3.98        37.02         9.96        30.02        28.11        12.66 
TCGA-64-5781 TCGA-91-6836 
       39.52         0.36 

$`CRNN WILD-TYPE`
TCGA-05-4249 TCGA-05-4382 TCGA-05-4384 TCGA-05-4397 TCGA-05-4398 TCGA-05-4402 
       38.07        19.92        14.01        24.03        47.05         8.02 
TCGA-05-4405 TCGA-05-4415 TCGA-05-4417 TCGA-05-4418 TCGA-05-4420 TCGA-05-4426 
       20.05         2.96        14.93         8.98        29.95        26.01 
TCGA-05-4427 TCGA-05-4430 TCGA-05-4432 TCGA-05-4433 TCGA-05-4434 TCGA-05-5420 
       26.01        25.02        25.02        24.00        15.02         1.02 
TCGA-05-5423 TCGA-05-5425 TCGA-05-5429 TCGA-05-5715 TCGA-35-3615 TCGA-35-4122 
        4.96         2.96         0.99         2.04         0.46         7.36 
TCGA-35-4123 TCGA-35-5375 TCGA-38-4625 TCGA-38-4626 TCGA-38-4627 TCGA-38-4628 
        5.95         8.68        47.61        85.32        37.71        49.02 
TCGA-38-4629 TCGA-38-4630 TCGA-38-4631 TCGA-38-4632 TCGA-38-6178 TCGA-44-2655 
       28.37        35.28        11.64        44.61         5.19        18.87 
TCGA-44-2656 TCGA-44-2657 TCGA-44-2659 TCGA-44-2661 TCGA-44-2662 TCGA-44-2665 
       19.10        13.15        17.39         3.39        15.78        13.15 
TCGA-44-2666 TCGA-44-2668 TCGA-44-3396 TCGA-44-3398 TCGA-44-3918 TCGA-44-3919 
        3.19         8.09        10.22         8.32         6.44         6.21 
TCGA-44-4112 TCGA-44-5643 TCGA-44-5645 TCGA-44-6144 TCGA-44-6145 TCGA-44-6146 
        4.60         3.48         6.84         0.30         3.35         9.93 
TCGA-44-6147 TCGA-44-6148 TCGA-44-6774 TCGA-44-6775 TCGA-44-6776 TCGA-44-6777 
        7.76         3.12         5.42         2.70        63.72        32.45 
TCGA-44-6778 TCGA-44-6779 TCGA-49-4486 TCGA-49-4488 TCGA-49-4494 TCGA-49-4501 
       36.49        16.41        76.21        28.57        35.54        46.72 
TCGA-49-4505 TCGA-49-4506 TCGA-49-4507 TCGA-49-4510 TCGA-49-4512 TCGA-49-4514 
       14.07        32.84         8.81        29.46        29.75        43.20 
TCGA-49-6742 TCGA-49-6743 TCGA-49-6744 TCGA-49-6745 TCGA-50-5044 TCGA-50-5045 
       15.02        12.13        12.99         4.93        20.48        71.47 
TCGA-50-5049 TCGA-50-5051 TCGA-50-5055 TCGA-50-5066 TCGA-50-5068 TCGA-50-5072 
       48.82        14.96        25.81         9.76        49.28         8.05 
TCGA-50-5930 TCGA-50-5931 TCGA-50-5932 TCGA-50-5933 TCGA-50-5935 TCGA-50-5936 
        9.27         8.78        35.87        77.88        21.47         8.45 
TCGA-50-5939 TCGA-50-5941 TCGA-50-5942 TCGA-50-5944 TCGA-50-5946 TCGA-50-6590 
       15.12         9.37         4.44        12.26        11.47        42.31 
TCGA-50-6591 TCGA-50-6592 TCGA-50-6593 TCGA-50-6594 TCGA-50-6595 TCGA-50-6597 
        3.88        25.51        11.05        12.16         6.21        33.37 
TCGA-55-1592 TCGA-55-1594 TCGA-55-1595 TCGA-55-1596 TCGA-55-5899 TCGA-55-6543 
       23.05        38.73        48.62        45.17         2.86         0.07 
TCGA-55-6642 TCGA-55-6712 TCGA-64-1676 TCGA-64-1677 TCGA-64-1678 TCGA-64-1680 
       32.61         0.79        56.81        20.65        39.09        37.02 
TCGA-64-5774 TCGA-64-5775 TCGA-64-5778 TCGA-64-5779 TCGA-64-5815 TCGA-67-3770 
       83.84         0.10        30.44        16.67         7.33         0.99 
TCGA-67-3771 TCGA-67-3772 TCGA-67-3773 TCGA-67-3774 TCGA-67-6215 TCGA-67-6216 
        1.97         0.59         2.04         0.59         0.89         0.69 
TCGA-67-6217 TCGA-71-6725 TCGA-73-4658 TCGA-73-4659 TCGA-73-4662 TCGA-73-4666 
       13.87         2.01        52.57        23.38        29.95        20.28 
TCGA-73-4668 TCGA-73-4670 TCGA-73-4675 TCGA-73-4676 TCGA-73-4677 TCGA-91-6828 
       15.35         0.46         1.32         4.01         1.25         1.22 
TCGA-91-6829 TCGA-91-6831 TCGA-91-6835 
       41.33         1.28         1.15 

  CRNN MUTATED CRNN WILD-TYPE 
          0.36           0.07 
  CRNN MUTATED CRNN WILD-TYPE 
         39.52          85.32 
  CRNN MUTATED CRNN WILD-TYPE 
        20.385         13.870 
[1] "0.4 - 39.5 (20.4)" "0.1 - 85.3 (13.9)"
    TCGA-05-4249     TCGA-05-4250     TCGA-05-4382     TCGA-05-4384 
"CRNN WILD-TYPE"   "CRNN MUTATED" "CRNN WILD-TYPE" "CRNN WILD-TYPE" 
    TCGA-05-4390     TCGA-05-4396     TCGA-05-4397     TCGA-05-4398 
  "CRNN MUTATED"   "CRNN MUTATED" "CRNN WILD-TYPE" "CRNN WILD-TYPE" 
    TCGA-05-4402     TCGA-05-4405     TCGA-05-4415     TCGA-05-4417 
"CRNN WILD-TYPE" "CRNN WILD-TYPE" "CRNN WILD-TYPE" "CRNN WILD-TYPE" 
    TCGA-05-4418     TCGA-05-4420     TCGA-05-4424     TCGA-05-4426 
"CRNN WILD-TYPE" "CRNN WILD-TYPE"   "CRNN MUTATED" "CRNN WILD-TYPE" 
    TCGA-05-4427     TCGA-05-4430     TCGA-05-4432     TCGA-05-4433 
"CRNN WILD-TYPE" "CRNN WILD-TYPE" "CRNN WILD-TYPE" "CRNN WILD-TYPE" 
    TCGA-05-4434     TCGA-05-5420     TCGA-05-5423     TCGA-05-5425 
"CRNN WILD-TYPE" "CRNN WILD-TYPE" "CRNN WILD-TYPE" "CRNN WILD-TYPE" 
    TCGA-05-5429     TCGA-05-5715     TCGA-35-3615     TCGA-35-4122 
"CRNN WILD-TYPE" "CRNN WILD-TYPE" "CRNN WILD-TYPE" "CRNN WILD-TYPE" 
    TCGA-35-4123     TCGA-35-5375     TCGA-38-4625     TCGA-38-4626 
"CRNN WILD-TYPE" "CRNN WILD-TYPE" "CRNN WILD-TYPE" "CRNN WILD-TYPE" 
    TCGA-38-4627     TCGA-38-4628     TCGA-38-4629     TCGA-38-4630 
"CRNN WILD-TYPE" "CRNN WILD-TYPE" "CRNN WILD-TYPE" "CRNN WILD-TYPE" 
    TCGA-38-4631     TCGA-38-4632     TCGA-38-6178     TCGA-44-2655 
"CRNN WILD-TYPE" "CRNN WILD-TYPE" "CRNN WILD-TYPE" "CRNN WILD-TYPE" 
    TCGA-44-2656     TCGA-44-2657     TCGA-44-2659     TCGA-44-2661 
"CRNN WILD-TYPE" "CRNN WILD-TYPE" "CRNN WILD-TYPE" "CRNN WILD-TYPE" 
    TCGA-44-2662     TCGA-44-2665     TCGA-44-2666     TCGA-44-2668 
"CRNN WILD-TYPE" "CRNN WILD-TYPE" "CRNN WILD-TYPE" "CRNN WILD-TYPE" 
    TCGA-44-3396     TCGA-44-3398     TCGA-44-3918     TCGA-44-3919 
"CRNN WILD-TYPE" "CRNN WILD-TYPE" "CRNN WILD-TYPE" "CRNN WILD-TYPE" 
    TCGA-44-4112     TCGA-44-5643     TCGA-44-5645     TCGA-44-6144 
"CRNN WILD-TYPE" "CRNN WILD-TYPE" "CRNN WILD-TYPE" "CRNN WILD-TYPE" 
    TCGA-44-6145     TCGA-44-6146     TCGA-44-6147     TCGA-44-6148 
"CRNN WILD-TYPE" "CRNN WILD-TYPE" "CRNN WILD-TYPE" "CRNN WILD-TYPE" 
    TCGA-44-6774     TCGA-44-6775     TCGA-44-6776     TCGA-44-6777 
"CRNN WILD-TYPE" "CRNN WILD-TYPE" "CRNN WILD-TYPE" "CRNN WILD-TYPE" 
    TCGA-44-6778     TCGA-44-6779     TCGA-49-4486     TCGA-49-4487 
"CRNN WILD-TYPE" "CRNN WILD-TYPE" "CRNN WILD-TYPE"   "CRNN MUTATED" 
    TCGA-49-4488     TCGA-49-4490     TCGA-49-4494     TCGA-49-4501 
"CRNN WILD-TYPE"   "CRNN MUTATED" "CRNN WILD-TYPE" "CRNN WILD-TYPE" 
    TCGA-49-4505     TCGA-49-4506     TCGA-49-4507     TCGA-49-4510 
"CRNN WILD-TYPE" "CRNN WILD-TYPE" "CRNN WILD-TYPE" "CRNN WILD-TYPE" 
    TCGA-49-4512     TCGA-49-4514     TCGA-49-6742     TCGA-49-6743 
"CRNN WILD-TYPE" "CRNN WILD-TYPE" "CRNN WILD-TYPE" "CRNN WILD-TYPE" 
    TCGA-49-6744     TCGA-49-6745     TCGA-50-5044     TCGA-50-5045 
"CRNN WILD-TYPE" "CRNN WILD-TYPE" "CRNN WILD-TYPE" "CRNN WILD-TYPE" 
    TCGA-50-5049     TCGA-50-5051     TCGA-50-5055     TCGA-50-5066 
"CRNN WILD-TYPE" "CRNN WILD-TYPE" "CRNN WILD-TYPE" "CRNN WILD-TYPE" 
    TCGA-50-5068     TCGA-50-5072     TCGA-50-5930     TCGA-50-5931 
"CRNN WILD-TYPE" "CRNN WILD-TYPE" "CRNN WILD-TYPE" "CRNN WILD-TYPE" 
    TCGA-50-5932     TCGA-50-5933     TCGA-50-5935     TCGA-50-5936 
"CRNN WILD-TYPE" "CRNN WILD-TYPE" "CRNN WILD-TYPE" "CRNN WILD-TYPE" 
    TCGA-50-5939     TCGA-50-5941     TCGA-50-5942     TCGA-50-5944 
"CRNN WILD-TYPE" "CRNN WILD-TYPE" "CRNN WILD-TYPE" "CRNN WILD-TYPE" 
    TCGA-50-5946     TCGA-50-6590     TCGA-50-6591     TCGA-50-6592 
"CRNN WILD-TYPE" "CRNN WILD-TYPE" "CRNN WILD-TYPE" "CRNN WILD-TYPE" 
    TCGA-50-6593     TCGA-50-6594     TCGA-50-6595     TCGA-50-6597 
"CRNN WILD-TYPE" "CRNN WILD-TYPE" "CRNN WILD-TYPE" "CRNN WILD-TYPE" 
    TCGA-55-1592     TCGA-55-1594     TCGA-55-1595     TCGA-55-1596 
"CRNN WILD-TYPE" "CRNN WILD-TYPE" "CRNN WILD-TYPE" "CRNN WILD-TYPE" 
    TCGA-55-5899     TCGA-55-6543     TCGA-55-6642     TCGA-55-6712 
"CRNN WILD-TYPE" "CRNN WILD-TYPE" "CRNN WILD-TYPE" "CRNN WILD-TYPE" 
    TCGA-64-1676     TCGA-64-1677     TCGA-64-1678     TCGA-64-1680 
"CRNN WILD-TYPE" "CRNN WILD-TYPE" "CRNN WILD-TYPE" "CRNN WILD-TYPE" 
    TCGA-64-5774     TCGA-64-5775     TCGA-64-5778     TCGA-64-5779 
"CRNN WILD-TYPE" "CRNN WILD-TYPE" "CRNN WILD-TYPE" "CRNN WILD-TYPE" 
    TCGA-64-5781     TCGA-64-5815     TCGA-67-3770     TCGA-67-3771 
  "CRNN MUTATED" "CRNN WILD-TYPE" "CRNN WILD-TYPE" "CRNN WILD-TYPE" 
    TCGA-67-3772     TCGA-67-3773     TCGA-67-3774     TCGA-67-6215 
"CRNN WILD-TYPE" "CRNN WILD-TYPE" "CRNN WILD-TYPE" "CRNN WILD-TYPE" 
    TCGA-67-6216     TCGA-67-6217     TCGA-71-6725     TCGA-73-4658 
"CRNN WILD-TYPE" "CRNN WILD-TYPE" "CRNN WILD-TYPE" "CRNN WILD-TYPE" 
    TCGA-73-4659     TCGA-73-4662     TCGA-73-4666     TCGA-73-4668 
"CRNN WILD-TYPE" "CRNN WILD-TYPE" "CRNN WILD-TYPE" "CRNN WILD-TYPE" 
    TCGA-73-4670     TCGA-73-4675     TCGA-73-4676     TCGA-73-4677 
"CRNN WILD-TYPE" "CRNN WILD-TYPE" "CRNN WILD-TYPE" "CRNN WILD-TYPE" 
    TCGA-91-6828     TCGA-91-6829     TCGA-91-6831     TCGA-91-6835 
"CRNN WILD-TYPE" "CRNN WILD-TYPE" "CRNN WILD-TYPE" "CRNN WILD-TYPE" 
    TCGA-91-6836 
  "CRNN MUTATED" 
    TCGA-05-4249     TCGA-05-4250     TCGA-05-4382     TCGA-05-4384 
"CRNN WILD-TYPE"   "CRNN MUTATED" "CRNN WILD-TYPE" "CRNN WILD-TYPE" 
    TCGA-05-4390     TCGA-05-4396     TCGA-05-4397     TCGA-05-4398 
  "CRNN MUTATED"   "CRNN MUTATED" "CRNN WILD-TYPE" "CRNN WILD-TYPE" 
    TCGA-05-4402     TCGA-05-4405     TCGA-05-4415     TCGA-05-4417 
"CRNN WILD-TYPE" "CRNN WILD-TYPE" "CRNN WILD-TYPE" "CRNN WILD-TYPE" 
    TCGA-05-4418     TCGA-05-4420     TCGA-05-4424     TCGA-05-4426 
"CRNN WILD-TYPE" "CRNN WILD-TYPE"   "CRNN MUTATED" "CRNN WILD-TYPE" 
    TCGA-05-4427     TCGA-05-4430     TCGA-05-4432     TCGA-05-4433 
"CRNN WILD-TYPE" "CRNN WILD-TYPE" "CRNN WILD-TYPE" "CRNN WILD-TYPE" 
    TCGA-05-4434     TCGA-05-5420     TCGA-05-5423     TCGA-05-5425 
"CRNN WILD-TYPE" "CRNN WILD-TYPE" "CRNN WILD-TYPE" "CRNN WILD-TYPE" 
    TCGA-05-5429     TCGA-05-5715     TCGA-35-3615     TCGA-35-4122 
"CRNN WILD-TYPE" "CRNN WILD-TYPE" "CRNN WILD-TYPE" "CRNN WILD-TYPE" 
    TCGA-35-4123     TCGA-35-5375     TCGA-38-4625     TCGA-38-4626 
"CRNN WILD-TYPE" "CRNN WILD-TYPE" "CRNN WILD-TYPE" "CRNN WILD-TYPE" 
    TCGA-38-4627     TCGA-38-4628     TCGA-38-4629     TCGA-38-4630 
"CRNN WILD-TYPE" "CRNN WILD-TYPE" "CRNN WILD-TYPE" "CRNN WILD-TYPE" 
    TCGA-38-4631     TCGA-38-4632     TCGA-38-6178     TCGA-44-2655 
"CRNN WILD-TYPE" "CRNN WILD-TYPE" "CRNN WILD-TYPE" "CRNN WILD-TYPE" 
    TCGA-44-2656     TCGA-44-2657     TCGA-44-2659     TCGA-44-2661 
"CRNN WILD-TYPE" "CRNN WILD-TYPE" "CRNN WILD-TYPE" "CRNN WILD-TYPE" 
    TCGA-44-2662     TCGA-44-2665     TCGA-44-2666     TCGA-44-2668 
"CRNN WILD-TYPE" "CRNN WILD-TYPE" "CRNN WILD-TYPE" "CRNN WILD-TYPE" 
    TCGA-44-3396     TCGA-44-3398     TCGA-44-3918     TCGA-44-3919 
"CRNN WILD-TYPE" "CRNN WILD-TYPE" "CRNN WILD-TYPE" "CRNN WILD-TYPE" 
    TCGA-44-4112     TCGA-44-5643     TCGA-44-5645     TCGA-44-6144 
"CRNN WILD-TYPE" "CRNN WILD-TYPE" "CRNN WILD-TYPE" "CRNN WILD-TYPE" 
    TCGA-44-6145     TCGA-44-6146     TCGA-44-6147     TCGA-44-6148 
"CRNN WILD-TYPE" "CRNN WILD-TYPE" "CRNN WILD-TYPE" "CRNN WILD-TYPE" 
    TCGA-44-6774     TCGA-44-6775     TCGA-44-6776     TCGA-44-6777 
"CRNN WILD-TYPE" "CRNN WILD-TYPE" "CRNN WILD-TYPE" "CRNN WILD-TYPE" 
    TCGA-44-6778     TCGA-44-6779     TCGA-49-4486     TCGA-49-4487 
"CRNN WILD-TYPE" "CRNN WILD-TYPE" "CRNN WILD-TYPE"   "CRNN MUTATED" 
    TCGA-49-4488     TCGA-49-4490     TCGA-49-4494     TCGA-49-4501 
"CRNN WILD-TYPE"   "CRNN MUTATED" "CRNN WILD-TYPE" "CRNN WILD-TYPE" 
    TCGA-49-4505     TCGA-49-4506     TCGA-49-4507     TCGA-49-4510 
"CRNN WILD-TYPE" "CRNN WILD-TYPE" "CRNN WILD-TYPE" "CRNN WILD-TYPE" 
    TCGA-49-4512     TCGA-49-4514     TCGA-49-6742     TCGA-49-6743 
"CRNN WILD-TYPE" "CRNN WILD-TYPE" "CRNN WILD-TYPE" "CRNN WILD-TYPE" 
    TCGA-49-6744     TCGA-49-6745     TCGA-50-5044     TCGA-50-5045 
"CRNN WILD-TYPE" "CRNN WILD-TYPE" "CRNN WILD-TYPE" "CRNN WILD-TYPE" 
    TCGA-50-5049     TCGA-50-5051     TCGA-50-5055     TCGA-50-5066 
"CRNN WILD-TYPE" "CRNN WILD-TYPE" "CRNN WILD-TYPE" "CRNN WILD-TYPE" 
    TCGA-50-5068     TCGA-50-5072     TCGA-50-5930     TCGA-50-5931 
"CRNN WILD-TYPE" "CRNN WILD-TYPE" "CRNN WILD-TYPE" "CRNN WILD-TYPE" 
    TCGA-50-5932     TCGA-50-5933     TCGA-50-5935     TCGA-50-5936 
"CRNN WILD-TYPE" "CRNN WILD-TYPE" "CRNN WILD-TYPE" "CRNN WILD-TYPE" 
    TCGA-50-5939     TCGA-50-5941     TCGA-50-5942     TCGA-50-5944 
"CRNN WILD-TYPE" "CRNN WILD-TYPE" "CRNN WILD-TYPE" "CRNN WILD-TYPE" 
    TCGA-50-5946     TCGA-50-6590     TCGA-50-6591     TCGA-50-6592 
"CRNN WILD-TYPE" "CRNN WILD-TYPE" "CRNN WILD-TYPE" "CRNN WILD-TYPE" 
    TCGA-50-6593     TCGA-50-6594     TCGA-50-6595     TCGA-50-6597 
"CRNN WILD-TYPE" "CRNN WILD-TYPE" "CRNN WILD-TYPE" "CRNN WILD-TYPE" 
    TCGA-55-1592     TCGA-55-1594     TCGA-55-1595     TCGA-55-1596 
"CRNN WILD-TYPE" "CRNN WILD-TYPE" "CRNN WILD-TYPE" "CRNN WILD-TYPE" 
    TCGA-55-5899     TCGA-55-6543     TCGA-55-6642     TCGA-55-6712 
"CRNN WILD-TYPE" "CRNN WILD-TYPE" "CRNN WILD-TYPE" "CRNN WILD-TYPE" 
    TCGA-64-1676     TCGA-64-1677     TCGA-64-1678     TCGA-64-1680 
"CRNN WILD-TYPE" "CRNN WILD-TYPE" "CRNN WILD-TYPE" "CRNN WILD-TYPE" 
    TCGA-64-5774     TCGA-64-5775     TCGA-64-5778     TCGA-64-5779 
"CRNN WILD-TYPE" "CRNN WILD-TYPE" "CRNN WILD-TYPE" "CRNN WILD-TYPE" 
    TCGA-64-5781     TCGA-64-5815     TCGA-67-3770     TCGA-67-3771 
  "CRNN MUTATED" "CRNN WILD-TYPE" "CRNN WILD-TYPE" "CRNN WILD-TYPE" 
    TCGA-67-3772     TCGA-67-3773     TCGA-67-3774     TCGA-67-6215 
"CRNN WILD-TYPE" "CRNN WILD-TYPE" "CRNN WILD-TYPE" "CRNN WILD-TYPE" 
    TCGA-67-6216     TCGA-67-6217     TCGA-71-6725     TCGA-73-4658 
"CRNN WILD-TYPE" "CRNN WILD-TYPE" "CRNN WILD-TYPE" "CRNN WILD-TYPE" 
    TCGA-73-4659     TCGA-73-4662     TCGA-73-4666     TCGA-73-4668 
"CRNN WILD-TYPE" "CRNN WILD-TYPE" "CRNN WILD-TYPE" "CRNN WILD-TYPE" 
    TCGA-73-4670     TCGA-73-4675     TCGA-73-4676     TCGA-73-4677 
"CRNN WILD-TYPE" "CRNN WILD-TYPE" "CRNN WILD-TYPE" "CRNN WILD-TYPE" 
    TCGA-91-6828     TCGA-91-6829     TCGA-91-6831     TCGA-91-6835 
"CRNN WILD-TYPE" "CRNN WILD-TYPE" "CRNN WILD-TYPE" "CRNN WILD-TYPE" 
    TCGA-91-6836 
  "CRNN MUTATED" 
    TCGA-05-4249     TCGA-05-4250     TCGA-05-4382     TCGA-05-4384 
"CRNN WILD-TYPE"   "CRNN MUTATED" "CRNN WILD-TYPE" "CRNN WILD-TYPE" 
    TCGA-05-4390     TCGA-05-4396     TCGA-05-4397     TCGA-05-4398 
  "CRNN MUTATED"   "CRNN MUTATED" "CRNN WILD-TYPE" "CRNN WILD-TYPE" 
    TCGA-05-4402     TCGA-05-4405     TCGA-05-4415     TCGA-05-4417 
"CRNN WILD-TYPE" "CRNN WILD-TYPE" "CRNN WILD-TYPE" "CRNN WILD-TYPE" 
    TCGA-05-4418     TCGA-05-4420     TCGA-05-4424     TCGA-05-4426 
"CRNN WILD-TYPE" "CRNN WILD-TYPE"   "CRNN MUTATED" "CRNN WILD-TYPE" 
    TCGA-05-4427     TCGA-05-4430     TCGA-05-4432     TCGA-05-4433 
"CRNN WILD-TYPE" "CRNN WILD-TYPE" "CRNN WILD-TYPE" "CRNN WILD-TYPE" 
    TCGA-05-4434     TCGA-05-5420     TCGA-05-5423     TCGA-05-5425 
"CRNN WILD-TYPE" "CRNN WILD-TYPE" "CRNN WILD-TYPE" "CRNN WILD-TYPE" 
    TCGA-05-5429     TCGA-05-5715     TCGA-35-3615     TCGA-35-4122 
"CRNN WILD-TYPE" "CRNN WILD-TYPE" "CRNN WILD-TYPE" "CRNN WILD-TYPE" 
    TCGA-35-4123     TCGA-35-5375     TCGA-38-4625     TCGA-38-4626 
"CRNN WILD-TYPE" "CRNN WILD-TYPE" "CRNN WILD-TYPE" "CRNN WILD-TYPE" 
    TCGA-38-4627     TCGA-38-4628     TCGA-38-4629     TCGA-38-4630 
"CRNN WILD-TYPE" "CRNN WILD-TYPE" "CRNN WILD-TYPE" "CRNN WILD-TYPE" 
    TCGA-38-4631     TCGA-38-4632     TCGA-38-6178     TCGA-44-2655 
"CRNN WILD-TYPE" "CRNN WILD-TYPE" "CRNN WILD-TYPE" "CRNN WILD-TYPE" 
    TCGA-44-2656     TCGA-44-2657     TCGA-44-2659     TCGA-44-2661 
"CRNN WILD-TYPE" "CRNN WILD-TYPE" "CRNN WILD-TYPE" "CRNN WILD-TYPE" 
    TCGA-44-2662     TCGA-44-2665     TCGA-44-2666     TCGA-44-2668 
"CRNN WILD-TYPE" "CRNN WILD-TYPE" "CRNN WILD-TYPE" "CRNN WILD-TYPE" 
    TCGA-44-3396     TCGA-44-3398     TCGA-44-3918     TCGA-44-3919 
"CRNN WILD-TYPE" "CRNN WILD-TYPE" "CRNN WILD-TYPE" "CRNN WILD-TYPE" 
    TCGA-44-4112     TCGA-44-5643     TCGA-44-5645     TCGA-44-6144 
"CRNN WILD-TYPE" "CRNN WILD-TYPE" "CRNN WILD-TYPE" "CRNN WILD-TYPE" 
    TCGA-44-6145     TCGA-44-6146     TCGA-44-6147     TCGA-44-6148 
"CRNN WILD-TYPE" "CRNN WILD-TYPE" "CRNN WILD-TYPE" "CRNN WILD-TYPE" 
    TCGA-44-6774     TCGA-44-6775     TCGA-44-6776     TCGA-44-6777 
"CRNN WILD-TYPE" "CRNN WILD-TYPE" "CRNN WILD-TYPE" "CRNN WILD-TYPE" 
    TCGA-44-6778     TCGA-44-6779     TCGA-49-4486     TCGA-49-4487 
"CRNN WILD-TYPE" "CRNN WILD-TYPE" "CRNN WILD-TYPE"   "CRNN MUTATED" 
    TCGA-49-4488     TCGA-49-4490     TCGA-49-4494     TCGA-49-4501 
"CRNN WILD-TYPE"   "CRNN MUTATED" "CRNN WILD-TYPE" "CRNN WILD-TYPE" 
    TCGA-49-4505     TCGA-49-4506     TCGA-49-4507     TCGA-49-4510 
"CRNN WILD-TYPE" "CRNN WILD-TYPE" "CRNN WILD-TYPE" "CRNN WILD-TYPE" 
    TCGA-49-4512     TCGA-49-4514     TCGA-49-6742     TCGA-49-6743 
"CRNN WILD-TYPE" "CRNN WILD-TYPE" "CRNN WILD-TYPE" "CRNN WILD-TYPE" 
    TCGA-49-6744     TCGA-49-6745     TCGA-50-5044     TCGA-50-5045 
"CRNN WILD-TYPE" "CRNN WILD-TYPE" "CRNN WILD-TYPE" "CRNN WILD-TYPE" 
    TCGA-50-5049     TCGA-50-5051     TCGA-50-5055     TCGA-50-5066 
"CRNN WILD-TYPE" "CRNN WILD-TYPE" "CRNN WILD-TYPE" "CRNN WILD-TYPE" 
    TCGA-50-5068     TCGA-50-5072     TCGA-50-5930     TCGA-50-5931 
"CRNN WILD-TYPE" "CRNN WILD-TYPE" "CRNN WILD-TYPE" "CRNN WILD-TYPE" 
    TCGA-50-5932     TCGA-50-5933     TCGA-50-5935     TCGA-50-5936 
"CRNN WILD-TYPE" "CRNN WILD-TYPE" "CRNN WILD-TYPE" "CRNN WILD-TYPE" 
    TCGA-50-5939     TCGA-50-5941     TCGA-50-5942     TCGA-50-5944 
"CRNN WILD-TYPE" "CRNN WILD-TYPE" "CRNN WILD-TYPE" "CRNN WILD-TYPE" 
    TCGA-50-5946     TCGA-50-6590     TCGA-50-6591     TCGA-50-6592 
"CRNN WILD-TYPE" "CRNN WILD-TYPE" "CRNN WILD-TYPE" "CRNN WILD-TYPE" 
    TCGA-50-6593     TCGA-50-6594     TCGA-50-6595     TCGA-50-6597 
"CRNN WILD-TYPE" "CRNN WILD-TYPE" "CRNN WILD-TYPE" "CRNN WILD-TYPE" 
    TCGA-55-1592     TCGA-55-1594     TCGA-55-1595     TCGA-55-1596 
"CRNN WILD-TYPE" "CRNN WILD-TYPE" "CRNN WILD-TYPE" "CRNN WILD-TYPE" 
    TCGA-55-5899     TCGA-55-6543     TCGA-55-6642     TCGA-55-6712 
"CRNN WILD-TYPE" "CRNN WILD-TYPE" "CRNN WILD-TYPE" "CRNN WILD-TYPE" 
    TCGA-64-1676     TCGA-64-1677     TCGA-64-1678     TCGA-64-1680 
"CRNN WILD-TYPE" "CRNN WILD-TYPE" "CRNN WILD-TYPE" "CRNN WILD-TYPE" 
    TCGA-64-5774     TCGA-64-5775     TCGA-64-5778     TCGA-64-5779 
"CRNN WILD-TYPE" "CRNN WILD-TYPE" "CRNN WILD-TYPE" "CRNN WILD-TYPE" 
    TCGA-64-5781     TCGA-64-5815     TCGA-67-3770     TCGA-67-3771 
  "CRNN MUTATED" "CRNN WILD-TYPE" "CRNN WILD-TYPE" "CRNN WILD-TYPE" 
    TCGA-67-3772     TCGA-67-3773     TCGA-67-3774     TCGA-67-6215 
"CRNN WILD-TYPE" "CRNN WILD-TYPE" "CRNN WILD-TYPE" "CRNN WILD-TYPE" 
    TCGA-67-6216     TCGA-67-6217     TCGA-71-6725     TCGA-73-4658 
"CRNN WILD-TYPE" "CRNN WILD-TYPE" "CRNN WILD-TYPE" "CRNN WILD-TYPE" 
    TCGA-73-4659     TCGA-73-4662     TCGA-73-4666     TCGA-73-4668 
"CRNN WILD-TYPE" "CRNN WILD-TYPE" "CRNN WILD-TYPE" "CRNN WILD-TYPE" 
    TCGA-73-4670     TCGA-73-4675     TCGA-73-4676     TCGA-73-4677 
"CRNN WILD-TYPE" "CRNN WILD-TYPE" "CRNN WILD-TYPE" "CRNN WILD-TYPE" 
    TCGA-91-6828     TCGA-91-6829     TCGA-91-6831     TCGA-91-6835 
"CRNN WILD-TYPE" "CRNN WILD-TYPE" "CRNN WILD-TYPE" "CRNN WILD-TYPE" 
    TCGA-91-6836 
  "CRNN MUTATED" 
[1] "hr=" "1.6"
D216V2, continuous
D216V3, binary
[1] "tbl2"
                cls
clus             [,1] [,2]
  CRNN MUTATED      6    3
  CRNN WILD-TYPE   87   76
        clus
vv       CRNN MUTATED CRNN WILD-TYPE
  FEMALE            6             87
  MALE              3             76
D216V4, continuous
D216V5, multiclass
D216V6, multiclass
    clus
vv   CRNN MUTATED CRNN WILD-TYPE
  T1            1             40
  T2            4            104
  T3            3             11
  T4            1              7
D216V7, multiclass
       clus
vv      CRNN MUTATED CRNN WILD-TYPE
  N0               6             89
  N1               2             35
  N2+N3            1             34
D216V8, multiclass
    clus
vv   CRNN MUTATED CRNN WILD-TYPE
  M0            8            129
  M1            0              9
  MX            1             21
D216V9, multiclass
     clus
vv    CRNN MUTATED CRNN WILD-TYPE
  I              5             83
  II             1             32
  III            3             36
  IV             0              9
D216V10, binary
[1] "tbl2"
                cls
clus             [,1] [,2]
  CRNN MUTATED      1    8
  CRNN WILD-TYPE   15  148
     clus
vv    CRNN MUTATED CRNN WILD-TYPE
  NO             1             15
  YES            8            148
D216V11, continuous
D216V12, continuous
D216V13, multiclass
                                             clus
vv                                            CRNN MUTATED CRNN WILD-TYPE
  CURRENT REFORMED SMOKER FOR < OR = 15 YEARS            6             56
  CURRENT REFORMED SMOKER FOR > 15 YEARS                 2             44
  CURRENT SMOKER                                         1             27
  LIFELONG NON-SMOKER                                    0             24
D216V14, continuous

Clustering(217) Variable = NPY1R MUTATION ANALYSIS
D217V1, survival
                 sevent
clus2              0  1
  NPY1R MUTATED    3  3
  NPY1R WILD-TYPE 96 47
  NPY1R MUTATED NPY1R WILD-TYPE 
              6             143 
  NPY1R MUTATED NPY1R WILD-TYPE 
              3              47 
$`NPY1R MUTATED`
TCGA-05-4396 TCGA-44-2656 TCGA-49-4512 TCGA-50-5045 TCGA-64-5781 TCGA-73-4676 
        9.96        19.10        29.75        71.47        39.52         4.01 

$`NPY1R WILD-TYPE`
TCGA-05-4249 TCGA-05-4250 TCGA-05-4382 TCGA-05-4384 TCGA-05-4390 TCGA-05-4397 
       38.07         3.98        19.92        14.01        37.02        24.03 
TCGA-05-4398 TCGA-05-4402 TCGA-05-4405 TCGA-05-4415 TCGA-05-4417 TCGA-05-4418 
       47.05         8.02        20.05         2.96        14.93         8.98 
TCGA-05-4420 TCGA-05-4424 TCGA-05-4426 TCGA-05-4427 TCGA-05-4430 TCGA-05-4432 
       29.95        30.02        26.01        26.01        25.02        25.02 
TCGA-05-4433 TCGA-05-4434 TCGA-05-5420 TCGA-05-5423 TCGA-05-5425 TCGA-05-5429 
       24.00        15.02         1.02         4.96         2.96         0.99 
TCGA-05-5715 TCGA-35-3615 TCGA-35-4122 TCGA-35-4123 TCGA-35-5375 TCGA-38-4625 
        2.04         0.46         7.36         5.95         8.68        47.61 
TCGA-38-4626 TCGA-38-4627 TCGA-38-4628 TCGA-38-4629 TCGA-38-4630 TCGA-38-4631 
       85.32        37.71        49.02        28.37        35.28        11.64 
TCGA-38-4632 TCGA-38-6178 TCGA-44-2655 TCGA-44-2657 TCGA-44-2659 TCGA-44-2661 
       44.61         5.19        18.87        13.15        17.39         3.39 
TCGA-44-2662 TCGA-44-2665 TCGA-44-2666 TCGA-44-2668 TCGA-44-3396 TCGA-44-3398 
       15.78        13.15         3.19         8.09        10.22         8.32 
TCGA-44-3918 TCGA-44-3919 TCGA-44-4112 TCGA-44-5643 TCGA-44-5645 TCGA-44-6144 
        6.44         6.21         4.60         3.48         6.84         0.30 
TCGA-44-6145 TCGA-44-6146 TCGA-44-6147 TCGA-44-6148 TCGA-44-6774 TCGA-44-6775 
        3.35         9.93         7.76         3.12         5.42         2.70 
TCGA-44-6776 TCGA-44-6777 TCGA-44-6778 TCGA-44-6779 TCGA-49-4486 TCGA-49-4487 
       63.72        32.45        36.49        16.41        76.21        28.11 
TCGA-49-4488 TCGA-49-4490 TCGA-49-4494 TCGA-49-4501 TCGA-49-4505 TCGA-49-4506 
       28.57        12.66        35.54        46.72        14.07        32.84 
TCGA-49-4507 TCGA-49-4510 TCGA-49-4514 TCGA-49-6742 TCGA-49-6743 TCGA-49-6744 
        8.81        29.46        43.20        15.02        12.13        12.99 
TCGA-49-6745 TCGA-50-5044 TCGA-50-5049 TCGA-50-5051 TCGA-50-5055 TCGA-50-5066 
        4.93        20.48        48.82        14.96        25.81         9.76 
TCGA-50-5068 TCGA-50-5072 TCGA-50-5930 TCGA-50-5931 TCGA-50-5932 TCGA-50-5933 
       49.28         8.05         9.27         8.78        35.87        77.88 
TCGA-50-5935 TCGA-50-5936 TCGA-50-5939 TCGA-50-5941 TCGA-50-5942 TCGA-50-5944 
       21.47         8.45        15.12         9.37         4.44        12.26 
TCGA-50-5946 TCGA-50-6590 TCGA-50-6591 TCGA-50-6592 TCGA-50-6593 TCGA-50-6594 
       11.47        42.31         3.88        25.51        11.05        12.16 
TCGA-50-6595 TCGA-50-6597 TCGA-55-1592 TCGA-55-1594 TCGA-55-1595 TCGA-55-1596 
        6.21        33.37        23.05        38.73        48.62        45.17 
TCGA-55-5899 TCGA-55-6543 TCGA-55-6642 TCGA-55-6712 TCGA-64-1676 TCGA-64-1677 
        2.86         0.07        32.61         0.79        56.81        20.65 
TCGA-64-1678 TCGA-64-1680 TCGA-64-5774 TCGA-64-5775 TCGA-64-5778 TCGA-64-5779 
       39.09        37.02        83.84         0.10        30.44        16.67 
TCGA-64-5815 TCGA-67-3770 TCGA-67-3771 TCGA-67-3772 TCGA-67-3773 TCGA-67-3774 
        7.33         0.99         1.97         0.59         2.04         0.59 
TCGA-67-6215 TCGA-67-6216 TCGA-67-6217 TCGA-71-6725 TCGA-73-4658 TCGA-73-4659 
        0.89         0.69        13.87         2.01        52.57        23.38 
TCGA-73-4662 TCGA-73-4666 TCGA-73-4668 TCGA-73-4670 TCGA-73-4675 TCGA-73-4677 
       29.95        20.28        15.35         0.46         1.32         1.25 
TCGA-91-6828 TCGA-91-6829 TCGA-91-6831 TCGA-91-6835 TCGA-91-6836 
        1.22        41.33         1.28         1.15         0.36 

  NPY1R MUTATED NPY1R WILD-TYPE 
           4.01            0.07 
  NPY1R MUTATED NPY1R WILD-TYPE 
          71.47           85.32 
  NPY1R MUTATED NPY1R WILD-TYPE 
         24.425          13.150 
[1] "4.0 - 71.5 (24.4)" "0.1 - 85.3 (13.2)"
     TCGA-05-4249      TCGA-05-4250      TCGA-05-4382      TCGA-05-4384 
"NPY1R WILD-TYPE" "NPY1R WILD-TYPE" "NPY1R WILD-TYPE" "NPY1R WILD-TYPE" 
     TCGA-05-4390      TCGA-05-4396      TCGA-05-4397      TCGA-05-4398 
"NPY1R WILD-TYPE"   "NPY1R MUTATED" "NPY1R WILD-TYPE" "NPY1R WILD-TYPE" 
     TCGA-05-4402      TCGA-05-4405      TCGA-05-4415      TCGA-05-4417 
"NPY1R WILD-TYPE" "NPY1R WILD-TYPE" "NPY1R WILD-TYPE" "NPY1R WILD-TYPE" 
     TCGA-05-4418      TCGA-05-4420      TCGA-05-4424      TCGA-05-4426 
"NPY1R WILD-TYPE" "NPY1R WILD-TYPE" "NPY1R WILD-TYPE" "NPY1R WILD-TYPE" 
     TCGA-05-4427      TCGA-05-4430      TCGA-05-4432      TCGA-05-4433 
"NPY1R WILD-TYPE" "NPY1R WILD-TYPE" "NPY1R WILD-TYPE" "NPY1R WILD-TYPE" 
     TCGA-05-4434      TCGA-05-5420      TCGA-05-5423      TCGA-05-5425 
"NPY1R WILD-TYPE" "NPY1R WILD-TYPE" "NPY1R WILD-TYPE" "NPY1R WILD-TYPE" 
     TCGA-05-5429      TCGA-05-5715      TCGA-35-3615      TCGA-35-4122 
"NPY1R WILD-TYPE" "NPY1R WILD-TYPE" "NPY1R WILD-TYPE" "NPY1R WILD-TYPE" 
     TCGA-35-4123      TCGA-35-5375      TCGA-38-4625      TCGA-38-4626 
"NPY1R WILD-TYPE" "NPY1R WILD-TYPE" "NPY1R WILD-TYPE" "NPY1R WILD-TYPE" 
     TCGA-38-4627      TCGA-38-4628      TCGA-38-4629      TCGA-38-4630 
"NPY1R WILD-TYPE" "NPY1R WILD-TYPE" "NPY1R WILD-TYPE" "NPY1R WILD-TYPE" 
     TCGA-38-4631      TCGA-38-4632      TCGA-38-6178      TCGA-44-2655 
"NPY1R WILD-TYPE" "NPY1R WILD-TYPE" "NPY1R WILD-TYPE" "NPY1R WILD-TYPE" 
     TCGA-44-2656      TCGA-44-2657      TCGA-44-2659      TCGA-44-2661 
  "NPY1R MUTATED" "NPY1R WILD-TYPE" "NPY1R WILD-TYPE" "NPY1R WILD-TYPE" 
     TCGA-44-2662      TCGA-44-2665      TCGA-44-2666      TCGA-44-2668 
"NPY1R WILD-TYPE" "NPY1R WILD-TYPE" "NPY1R WILD-TYPE" "NPY1R WILD-TYPE" 
     TCGA-44-3396      TCGA-44-3398      TCGA-44-3918      TCGA-44-3919 
"NPY1R WILD-TYPE" "NPY1R WILD-TYPE" "NPY1R WILD-TYPE" "NPY1R WILD-TYPE" 
     TCGA-44-4112      TCGA-44-5643      TCGA-44-5645      TCGA-44-6144 
"NPY1R WILD-TYPE" "NPY1R WILD-TYPE" "NPY1R WILD-TYPE" "NPY1R WILD-TYPE" 
     TCGA-44-6145      TCGA-44-6146      TCGA-44-6147      TCGA-44-6148 
"NPY1R WILD-TYPE" "NPY1R WILD-TYPE" "NPY1R WILD-TYPE" "NPY1R WILD-TYPE" 
     TCGA-44-6774      TCGA-44-6775      TCGA-44-6776      TCGA-44-6777 
"NPY1R WILD-TYPE" "NPY1R WILD-TYPE" "NPY1R WILD-TYPE" "NPY1R WILD-TYPE" 
     TCGA-44-6778      TCGA-44-6779      TCGA-49-4486      TCGA-49-4487 
"NPY1R WILD-TYPE" "NPY1R WILD-TYPE" "NPY1R WILD-TYPE" "NPY1R WILD-TYPE" 
     TCGA-49-4488      TCGA-49-4490      TCGA-49-4494      TCGA-49-4501 
"NPY1R WILD-TYPE" "NPY1R WILD-TYPE" "NPY1R WILD-TYPE" "NPY1R WILD-TYPE" 
     TCGA-49-4505      TCGA-49-4506      TCGA-49-4507      TCGA-49-4510 
"NPY1R WILD-TYPE" "NPY1R WILD-TYPE" "NPY1R WILD-TYPE" "NPY1R WILD-TYPE" 
     TCGA-49-4512      TCGA-49-4514      TCGA-49-6742      TCGA-49-6743 
  "NPY1R MUTATED" "NPY1R WILD-TYPE" "NPY1R WILD-TYPE" "NPY1R WILD-TYPE" 
     TCGA-49-6744      TCGA-49-6745      TCGA-50-5044      TCGA-50-5045 
"NPY1R WILD-TYPE" "NPY1R WILD-TYPE" "NPY1R WILD-TYPE"   "NPY1R MUTATED" 
     TCGA-50-5049      TCGA-50-5051      TCGA-50-5055      TCGA-50-5066 
"NPY1R WILD-TYPE" "NPY1R WILD-TYPE" "NPY1R WILD-TYPE" "NPY1R WILD-TYPE" 
     TCGA-50-5068      TCGA-50-5072      TCGA-50-5930      TCGA-50-5931 
"NPY1R WILD-TYPE" "NPY1R WILD-TYPE" "NPY1R WILD-TYPE" "NPY1R WILD-TYPE" 
     TCGA-50-5932      TCGA-50-5933      TCGA-50-5935      TCGA-50-5936 
"NPY1R WILD-TYPE" "NPY1R WILD-TYPE" "NPY1R WILD-TYPE" "NPY1R WILD-TYPE" 
     TCGA-50-5939      TCGA-50-5941      TCGA-50-5942      TCGA-50-5944 
"NPY1R WILD-TYPE" "NPY1R WILD-TYPE" "NPY1R WILD-TYPE" "NPY1R WILD-TYPE" 
     TCGA-50-5946      TCGA-50-6590      TCGA-50-6591      TCGA-50-6592 
"NPY1R WILD-TYPE" "NPY1R WILD-TYPE" "NPY1R WILD-TYPE" "NPY1R WILD-TYPE" 
     TCGA-50-6593      TCGA-50-6594      TCGA-50-6595      TCGA-50-6597 
"NPY1R WILD-TYPE" "NPY1R WILD-TYPE" "NPY1R WILD-TYPE" "NPY1R WILD-TYPE" 
     TCGA-55-1592      TCGA-55-1594      TCGA-55-1595      TCGA-55-1596 
"NPY1R WILD-TYPE" "NPY1R WILD-TYPE" "NPY1R WILD-TYPE" "NPY1R WILD-TYPE" 
     TCGA-55-5899      TCGA-55-6543      TCGA-55-6642      TCGA-55-6712 
"NPY1R WILD-TYPE" "NPY1R WILD-TYPE" "NPY1R WILD-TYPE" "NPY1R WILD-TYPE" 
     TCGA-64-1676      TCGA-64-1677      TCGA-64-1678      TCGA-64-1680 
"NPY1R WILD-TYPE" "NPY1R WILD-TYPE" "NPY1R WILD-TYPE" "NPY1R WILD-TYPE" 
     TCGA-64-5774      TCGA-64-5775      TCGA-64-5778      TCGA-64-5779 
"NPY1R WILD-TYPE" "NPY1R WILD-TYPE" "NPY1R WILD-TYPE" "NPY1R WILD-TYPE" 
     TCGA-64-5781      TCGA-64-5815      TCGA-67-3770      TCGA-67-3771 
  "NPY1R MUTATED" "NPY1R WILD-TYPE" "NPY1R WILD-TYPE" "NPY1R WILD-TYPE" 
     TCGA-67-3772      TCGA-67-3773      TCGA-67-3774      TCGA-67-6215 
"NPY1R WILD-TYPE" "NPY1R WILD-TYPE" "NPY1R WILD-TYPE" "NPY1R WILD-TYPE" 
     TCGA-67-6216      TCGA-67-6217      TCGA-71-6725      TCGA-73-4658 
"NPY1R WILD-TYPE" "NPY1R WILD-TYPE" "NPY1R WILD-TYPE" "NPY1R WILD-TYPE" 
     TCGA-73-4659      TCGA-73-4662      TCGA-73-4666      TCGA-73-4668 
"NPY1R WILD-TYPE" "NPY1R WILD-TYPE" "NPY1R WILD-TYPE" "NPY1R WILD-TYPE" 
     TCGA-73-4670      TCGA-73-4675      TCGA-73-4676      TCGA-73-4677 
"NPY1R WILD-TYPE" "NPY1R WILD-TYPE"   "NPY1R MUTATED" "NPY1R WILD-TYPE" 
     TCGA-91-6828      TCGA-91-6829      TCGA-91-6831      TCGA-91-6835 
"NPY1R WILD-TYPE" "NPY1R WILD-TYPE" "NPY1R WILD-TYPE" "NPY1R WILD-TYPE" 
     TCGA-91-6836 
"NPY1R WILD-TYPE" 
     TCGA-05-4249      TCGA-05-4250      TCGA-05-4382      TCGA-05-4384 
"NPY1R WILD-TYPE" "NPY1R WILD-TYPE" "NPY1R WILD-TYPE" "NPY1R WILD-TYPE" 
     TCGA-05-4390      TCGA-05-4396      TCGA-05-4397      TCGA-05-4398 
"NPY1R WILD-TYPE"   "NPY1R MUTATED" "NPY1R WILD-TYPE" "NPY1R WILD-TYPE" 
     TCGA-05-4402      TCGA-05-4405      TCGA-05-4415      TCGA-05-4417 
"NPY1R WILD-TYPE" "NPY1R WILD-TYPE" "NPY1R WILD-TYPE" "NPY1R WILD-TYPE" 
     TCGA-05-4418      TCGA-05-4420      TCGA-05-4424      TCGA-05-4426 
"NPY1R WILD-TYPE" "NPY1R WILD-TYPE" "NPY1R WILD-TYPE" "NPY1R WILD-TYPE" 
     TCGA-05-4427      TCGA-05-4430      TCGA-05-4432      TCGA-05-4433 
"NPY1R WILD-TYPE" "NPY1R WILD-TYPE" "NPY1R WILD-TYPE" "NPY1R WILD-TYPE" 
     TCGA-05-4434      TCGA-05-5420      TCGA-05-5423      TCGA-05-5425 
"NPY1R WILD-TYPE" "NPY1R WILD-TYPE" "NPY1R WILD-TYPE" "NPY1R WILD-TYPE" 
     TCGA-05-5429      TCGA-05-5715      TCGA-35-3615      TCGA-35-4122 
"NPY1R WILD-TYPE" "NPY1R WILD-TYPE" "NPY1R WILD-TYPE" "NPY1R WILD-TYPE" 
     TCGA-35-4123      TCGA-35-5375      TCGA-38-4625      TCGA-38-4626 
"NPY1R WILD-TYPE" "NPY1R WILD-TYPE" "NPY1R WILD-TYPE" "NPY1R WILD-TYPE" 
     TCGA-38-4627      TCGA-38-4628      TCGA-38-4629      TCGA-38-4630 
"NPY1R WILD-TYPE" "NPY1R WILD-TYPE" "NPY1R WILD-TYPE" "NPY1R WILD-TYPE" 
     TCGA-38-4631      TCGA-38-4632      TCGA-38-6178      TCGA-44-2655 
"NPY1R WILD-TYPE" "NPY1R WILD-TYPE" "NPY1R WILD-TYPE" "NPY1R WILD-TYPE" 
     TCGA-44-2656      TCGA-44-2657      TCGA-44-2659      TCGA-44-2661 
  "NPY1R MUTATED" "NPY1R WILD-TYPE" "NPY1R WILD-TYPE" "NPY1R WILD-TYPE" 
     TCGA-44-2662      TCGA-44-2665      TCGA-44-2666      TCGA-44-2668 
"NPY1R WILD-TYPE" "NPY1R WILD-TYPE" "NPY1R WILD-TYPE" "NPY1R WILD-TYPE" 
     TCGA-44-3396      TCGA-44-3398      TCGA-44-3918      TCGA-44-3919 
"NPY1R WILD-TYPE" "NPY1R WILD-TYPE" "NPY1R WILD-TYPE" "NPY1R WILD-TYPE" 
     TCGA-44-4112      TCGA-44-5643      TCGA-44-5645      TCGA-44-6144 
"NPY1R WILD-TYPE" "NPY1R WILD-TYPE" "NPY1R WILD-TYPE" "NPY1R WILD-TYPE" 
     TCGA-44-6145      TCGA-44-6146      TCGA-44-6147      TCGA-44-6148 
"NPY1R WILD-TYPE" "NPY1R WILD-TYPE" "NPY1R WILD-TYPE" "NPY1R WILD-TYPE" 
     TCGA-44-6774      TCGA-44-6775      TCGA-44-6776      TCGA-44-6777 
"NPY1R WILD-TYPE" "NPY1R WILD-TYPE" "NPY1R WILD-TYPE" "NPY1R WILD-TYPE" 
     TCGA-44-6778      TCGA-44-6779      TCGA-49-4486      TCGA-49-4487 
"NPY1R WILD-TYPE" "NPY1R WILD-TYPE" "NPY1R WILD-TYPE" "NPY1R WILD-TYPE" 
     TCGA-49-4488      TCGA-49-4490      TCGA-49-4494      TCGA-49-4501 
"NPY1R WILD-TYPE" "NPY1R WILD-TYPE" "NPY1R WILD-TYPE" "NPY1R WILD-TYPE" 
     TCGA-49-4505      TCGA-49-4506      TCGA-49-4507      TCGA-49-4510 
"NPY1R WILD-TYPE" "NPY1R WILD-TYPE" "NPY1R WILD-TYPE" "NPY1R WILD-TYPE" 
     TCGA-49-4512      TCGA-49-4514      TCGA-49-6742      TCGA-49-6743 
  "NPY1R MUTATED" "NPY1R WILD-TYPE" "NPY1R WILD-TYPE" "NPY1R WILD-TYPE" 
     TCGA-49-6744      TCGA-49-6745      TCGA-50-5044      TCGA-50-5045 
"NPY1R WILD-TYPE" "NPY1R WILD-TYPE" "NPY1R WILD-TYPE"   "NPY1R MUTATED" 
     TCGA-50-5049      TCGA-50-5051      TCGA-50-5055      TCGA-50-5066 
"NPY1R WILD-TYPE" "NPY1R WILD-TYPE" "NPY1R WILD-TYPE" "NPY1R WILD-TYPE" 
     TCGA-50-5068      TCGA-50-5072      TCGA-50-5930      TCGA-50-5931 
"NPY1R WILD-TYPE" "NPY1R WILD-TYPE" "NPY1R WILD-TYPE" "NPY1R WILD-TYPE" 
     TCGA-50-5932      TCGA-50-5933      TCGA-50-5935      TCGA-50-5936 
"NPY1R WILD-TYPE" "NPY1R WILD-TYPE" "NPY1R WILD-TYPE" "NPY1R WILD-TYPE" 
     TCGA-50-5939      TCGA-50-5941      TCGA-50-5942      TCGA-50-5944 
"NPY1R WILD-TYPE" "NPY1R WILD-TYPE" "NPY1R WILD-TYPE" "NPY1R WILD-TYPE" 
     TCGA-50-5946      TCGA-50-6590      TCGA-50-6591      TCGA-50-6592 
"NPY1R WILD-TYPE" "NPY1R WILD-TYPE" "NPY1R WILD-TYPE" "NPY1R WILD-TYPE" 
     TCGA-50-6593      TCGA-50-6594      TCGA-50-6595      TCGA-50-6597 
"NPY1R WILD-TYPE" "NPY1R WILD-TYPE" "NPY1R WILD-TYPE" "NPY1R WILD-TYPE" 
     TCGA-55-1592      TCGA-55-1594      TCGA-55-1595      TCGA-55-1596 
"NPY1R WILD-TYPE" "NPY1R WILD-TYPE" "NPY1R WILD-TYPE" "NPY1R WILD-TYPE" 
     TCGA-55-5899      TCGA-55-6543      TCGA-55-6642      TCGA-55-6712 
"NPY1R WILD-TYPE" "NPY1R WILD-TYPE" "NPY1R WILD-TYPE" "NPY1R WILD-TYPE" 
     TCGA-64-1676      TCGA-64-1677      TCGA-64-1678      TCGA-64-1680 
"NPY1R WILD-TYPE" "NPY1R WILD-TYPE" "NPY1R WILD-TYPE" "NPY1R WILD-TYPE" 
     TCGA-64-5774      TCGA-64-5775      TCGA-64-5778      TCGA-64-5779 
"NPY1R WILD-TYPE" "NPY1R WILD-TYPE" "NPY1R WILD-TYPE" "NPY1R WILD-TYPE" 
     TCGA-64-5781      TCGA-64-5815      TCGA-67-3770      TCGA-67-3771 
  "NPY1R MUTATED" "NPY1R WILD-TYPE" "NPY1R WILD-TYPE" "NPY1R WILD-TYPE" 
     TCGA-67-3772      TCGA-67-3773      TCGA-67-3774      TCGA-67-6215 
"NPY1R WILD-TYPE" "NPY1R WILD-TYPE" "NPY1R WILD-TYPE" "NPY1R WILD-TYPE" 
     TCGA-67-6216      TCGA-67-6217      TCGA-71-6725      TCGA-73-4658 
"NPY1R WILD-TYPE" "NPY1R WILD-TYPE" "NPY1R WILD-TYPE" "NPY1R WILD-TYPE" 
     TCGA-73-4659      TCGA-73-4662      TCGA-73-4666      TCGA-73-4668 
"NPY1R WILD-TYPE" "NPY1R WILD-TYPE" "NPY1R WILD-TYPE" "NPY1R WILD-TYPE" 
     TCGA-73-4670      TCGA-73-4675      TCGA-73-4676      TCGA-73-4677 
"NPY1R WILD-TYPE" "NPY1R WILD-TYPE"   "NPY1R MUTATED" "NPY1R WILD-TYPE" 
     TCGA-91-6828      TCGA-91-6829      TCGA-91-6831      TCGA-91-6835 
"NPY1R WILD-TYPE" "NPY1R WILD-TYPE" "NPY1R WILD-TYPE" "NPY1R WILD-TYPE" 
     TCGA-91-6836 
"NPY1R WILD-TYPE" 
     TCGA-05-4249      TCGA-05-4250      TCGA-05-4382      TCGA-05-4384 
"NPY1R WILD-TYPE" "NPY1R WILD-TYPE" "NPY1R WILD-TYPE" "NPY1R WILD-TYPE" 
     TCGA-05-4390      TCGA-05-4396      TCGA-05-4397      TCGA-05-4398 
"NPY1R WILD-TYPE"   "NPY1R MUTATED" "NPY1R WILD-TYPE" "NPY1R WILD-TYPE" 
     TCGA-05-4402      TCGA-05-4405      TCGA-05-4415      TCGA-05-4417 
"NPY1R WILD-TYPE" "NPY1R WILD-TYPE" "NPY1R WILD-TYPE" "NPY1R WILD-TYPE" 
     TCGA-05-4418      TCGA-05-4420      TCGA-05-4424      TCGA-05-4426 
"NPY1R WILD-TYPE" "NPY1R WILD-TYPE" "NPY1R WILD-TYPE" "NPY1R WILD-TYPE" 
     TCGA-05-4427      TCGA-05-4430      TCGA-05-4432      TCGA-05-4433 
"NPY1R WILD-TYPE" "NPY1R WILD-TYPE" "NPY1R WILD-TYPE" "NPY1R WILD-TYPE" 
     TCGA-05-4434      TCGA-05-5420      TCGA-05-5423      TCGA-05-5425 
"NPY1R WILD-TYPE" "NPY1R WILD-TYPE" "NPY1R WILD-TYPE" "NPY1R WILD-TYPE" 
     TCGA-05-5429      TCGA-05-5715      TCGA-35-3615      TCGA-35-4122 
"NPY1R WILD-TYPE" "NPY1R WILD-TYPE" "NPY1R WILD-TYPE" "NPY1R WILD-TYPE" 
     TCGA-35-4123      TCGA-35-5375      TCGA-38-4625      TCGA-38-4626 
"NPY1R WILD-TYPE" "NPY1R WILD-TYPE" "NPY1R WILD-TYPE" "NPY1R WILD-TYPE" 
     TCGA-38-4627      TCGA-38-4628      TCGA-38-4629      TCGA-38-4630 
"NPY1R WILD-TYPE" "NPY1R WILD-TYPE" "NPY1R WILD-TYPE" "NPY1R WILD-TYPE" 
     TCGA-38-4631      TCGA-38-4632      TCGA-38-6178      TCGA-44-2655 
"NPY1R WILD-TYPE" "NPY1R WILD-TYPE" "NPY1R WILD-TYPE" "NPY1R WILD-TYPE" 
     TCGA-44-2656      TCGA-44-2657      TCGA-44-2659      TCGA-44-2661 
  "NPY1R MUTATED" "NPY1R WILD-TYPE" "NPY1R WILD-TYPE" "NPY1R WILD-TYPE" 
     TCGA-44-2662      TCGA-44-2665      TCGA-44-2666      TCGA-44-2668 
"NPY1R WILD-TYPE" "NPY1R WILD-TYPE" "NPY1R WILD-TYPE" "NPY1R WILD-TYPE" 
     TCGA-44-3396      TCGA-44-3398      TCGA-44-3918      TCGA-44-3919 
"NPY1R WILD-TYPE" "NPY1R WILD-TYPE" "NPY1R WILD-TYPE" "NPY1R WILD-TYPE" 
     TCGA-44-4112      TCGA-44-5643      TCGA-44-5645      TCGA-44-6144 
"NPY1R WILD-TYPE" "NPY1R WILD-TYPE" "NPY1R WILD-TYPE" "NPY1R WILD-TYPE" 
     TCGA-44-6145      TCGA-44-6146      TCGA-44-6147      TCGA-44-6148 
"NPY1R WILD-TYPE" "NPY1R WILD-TYPE" "NPY1R WILD-TYPE" "NPY1R WILD-TYPE" 
     TCGA-44-6774      TCGA-44-6775      TCGA-44-6776      TCGA-44-6777 
"NPY1R WILD-TYPE" "NPY1R WILD-TYPE" "NPY1R WILD-TYPE" "NPY1R WILD-TYPE" 
     TCGA-44-6778      TCGA-44-6779      TCGA-49-4486      TCGA-49-4487 
"NPY1R WILD-TYPE" "NPY1R WILD-TYPE" "NPY1R WILD-TYPE" "NPY1R WILD-TYPE" 
     TCGA-49-4488      TCGA-49-4490      TCGA-49-4494      TCGA-49-4501 
"NPY1R WILD-TYPE" "NPY1R WILD-TYPE" "NPY1R WILD-TYPE" "NPY1R WILD-TYPE" 
     TCGA-49-4505      TCGA-49-4506      TCGA-49-4507      TCGA-49-4510 
"NPY1R WILD-TYPE" "NPY1R WILD-TYPE" "NPY1R WILD-TYPE" "NPY1R WILD-TYPE" 
     TCGA-49-4512      TCGA-49-4514      TCGA-49-6742      TCGA-49-6743 
  "NPY1R MUTATED" "NPY1R WILD-TYPE" "NPY1R WILD-TYPE" "NPY1R WILD-TYPE" 
     TCGA-49-6744      TCGA-49-6745      TCGA-50-5044      TCGA-50-5045 
"NPY1R WILD-TYPE" "NPY1R WILD-TYPE" "NPY1R WILD-TYPE"   "NPY1R MUTATED" 
     TCGA-50-5049      TCGA-50-5051      TCGA-50-5055      TCGA-50-5066 
"NPY1R WILD-TYPE" "NPY1R WILD-TYPE" "NPY1R WILD-TYPE" "NPY1R WILD-TYPE" 
     TCGA-50-5068      TCGA-50-5072      TCGA-50-5930      TCGA-50-5931 
"NPY1R WILD-TYPE" "NPY1R WILD-TYPE" "NPY1R WILD-TYPE" "NPY1R WILD-TYPE" 
     TCGA-50-5932      TCGA-50-5933      TCGA-50-5935      TCGA-50-5936 
"NPY1R WILD-TYPE" "NPY1R WILD-TYPE" "NPY1R WILD-TYPE" "NPY1R WILD-TYPE" 
     TCGA-50-5939      TCGA-50-5941      TCGA-50-5942      TCGA-50-5944 
"NPY1R WILD-TYPE" "NPY1R WILD-TYPE" "NPY1R WILD-TYPE" "NPY1R WILD-TYPE" 
     TCGA-50-5946      TCGA-50-6590      TCGA-50-6591      TCGA-50-6592 
"NPY1R WILD-TYPE" "NPY1R WILD-TYPE" "NPY1R WILD-TYPE" "NPY1R WILD-TYPE" 
     TCGA-50-6593      TCGA-50-6594      TCGA-50-6595      TCGA-50-6597 
"NPY1R WILD-TYPE" "NPY1R WILD-TYPE" "NPY1R WILD-TYPE" "NPY1R WILD-TYPE" 
     TCGA-55-1592      TCGA-55-1594      TCGA-55-1595      TCGA-55-1596 
"NPY1R WILD-TYPE" "NPY1R WILD-TYPE" "NPY1R WILD-TYPE" "NPY1R WILD-TYPE" 
     TCGA-55-5899      TCGA-55-6543      TCGA-55-6642      TCGA-55-6712 
"NPY1R WILD-TYPE" "NPY1R WILD-TYPE" "NPY1R WILD-TYPE" "NPY1R WILD-TYPE" 
     TCGA-64-1676      TCGA-64-1677      TCGA-64-1678      TCGA-64-1680 
"NPY1R WILD-TYPE" "NPY1R WILD-TYPE" "NPY1R WILD-TYPE" "NPY1R WILD-TYPE" 
     TCGA-64-5774      TCGA-64-5775      TCGA-64-5778      TCGA-64-5779 
"NPY1R WILD-TYPE" "NPY1R WILD-TYPE" "NPY1R WILD-TYPE" "NPY1R WILD-TYPE" 
     TCGA-64-5781      TCGA-64-5815      TCGA-67-3770      TCGA-67-3771 
  "NPY1R MUTATED" "NPY1R WILD-TYPE" "NPY1R WILD-TYPE" "NPY1R WILD-TYPE" 
     TCGA-67-3772      TCGA-67-3773      TCGA-67-3774      TCGA-67-6215 
"NPY1R WILD-TYPE" "NPY1R WILD-TYPE" "NPY1R WILD-TYPE" "NPY1R WILD-TYPE" 
     TCGA-67-6216      TCGA-67-6217      TCGA-71-6725      TCGA-73-4658 
"NPY1R WILD-TYPE" "NPY1R WILD-TYPE" "NPY1R WILD-TYPE" "NPY1R WILD-TYPE" 
     TCGA-73-4659      TCGA-73-4662      TCGA-73-4666      TCGA-73-4668 
"NPY1R WILD-TYPE" "NPY1R WILD-TYPE" "NPY1R WILD-TYPE" "NPY1R WILD-TYPE" 
     TCGA-73-4670      TCGA-73-4675      TCGA-73-4676      TCGA-73-4677 
"NPY1R WILD-TYPE" "NPY1R WILD-TYPE"   "NPY1R MUTATED" "NPY1R WILD-TYPE" 
     TCGA-91-6828      TCGA-91-6829      TCGA-91-6831      TCGA-91-6835 
"NPY1R WILD-TYPE" "NPY1R WILD-TYPE" "NPY1R WILD-TYPE" "NPY1R WILD-TYPE" 
     TCGA-91-6836 
"NPY1R WILD-TYPE" 
[1] "hr=" "1"  
D217V2, continuous
D217V3, binary
[1] "tbl2"
                 cls
clus              [,1] [,2]
  NPY1R MUTATED      3    4
  NPY1R WILD-TYPE   90   75
        clus
vv       NPY1R MUTATED NPY1R WILD-TYPE
  FEMALE             3              90
  MALE               4              75
D217V4, continuous
[1] "Remove cluster labels:" "NPY1R MUTATED"         
clus
  NPY1R MUTATED NPY1R WILD-TYPE 
              1              11 
     TCGA-35-4122      TCGA-35-4123      TCGA-35-5375      TCGA-64-1677 
"NPY1R WILD-TYPE" "NPY1R WILD-TYPE" "NPY1R WILD-TYPE" "NPY1R WILD-TYPE" 
     TCGA-64-5778      TCGA-71-6725      TCGA-73-4659      TCGA-73-4662 
"NPY1R WILD-TYPE" "NPY1R WILD-TYPE" "NPY1R WILD-TYPE" "NPY1R WILD-TYPE" 
     TCGA-73-4666      TCGA-73-4668      TCGA-75-5122 
"NPY1R WILD-TYPE" "NPY1R WILD-TYPE" "NPY1R WILD-TYPE" 
D217V5, multiclass
D217V6, multiclass
    clus
vv   NPY1R MUTATED NPY1R WILD-TYPE
  T1             1              40
  T2             5             103
  T3             0              14
  T4             1               7
D217V7, multiclass
       clus
vv      NPY1R MUTATED NPY1R WILD-TYPE
  N0                2              93
  N1                4              33
  N2+N3             1              34
D217V8, multiclass
    clus
vv   NPY1R MUTATED NPY1R WILD-TYPE
  M0             6             131
  M1             0               9
  MX             1              21
D217V9, multiclass
     clus
vv    NPY1R MUTATED NPY1R WILD-TYPE
  I               3              85
  II              2              31
  III             2              37
  IV              0               9
D217V10, binary
[1] "tbl2"
                 cls
clus              [,1] [,2]
  NPY1R MUTATED      2    5
  NPY1R WILD-TYPE   14  151
     clus
vv    NPY1R MUTATED NPY1R WILD-TYPE
  NO              2              14
  YES             5             151
D217V11, continuous
D217V12, continuous
D217V13, multiclass
                                             clus
vv                                            NPY1R MUTATED NPY1R WILD-TYPE
  CURRENT REFORMED SMOKER FOR < OR = 15 YEARS             3              59
  CURRENT REFORMED SMOKER FOR > 15 YEARS                  2              44
  CURRENT SMOKER                                          0              28
  LIFELONG NON-SMOKER                                     1              23
D217V14, continuous

Clustering(218) Variable = TTK MUTATION ANALYSIS
D218V1, survival
               sevent
clus2            0  1
  TTK MUTATED    6  2
  TTK WILD-TYPE 93 48
  TTK MUTATED TTK WILD-TYPE 
            8           141 
  TTK MUTATED TTK WILD-TYPE 
            2            48 
$`TTK MUTATED`
TCGA-05-4382 TCGA-05-4398 TCGA-05-5420 TCGA-35-5375 TCGA-38-4625 TCGA-50-6590 
       19.92        47.05         1.02         8.68        47.61        42.31 
TCGA-67-6215 TCGA-73-4659 
        0.89        23.38 

$`TTK WILD-TYPE`
TCGA-05-4249 TCGA-05-4250 TCGA-05-4384 TCGA-05-4390 TCGA-05-4396 TCGA-05-4397 
       38.07         3.98        14.01        37.02         9.96        24.03 
TCGA-05-4402 TCGA-05-4405 TCGA-05-4415 TCGA-05-4417 TCGA-05-4418 TCGA-05-4420 
        8.02        20.05         2.96        14.93         8.98        29.95 
TCGA-05-4424 TCGA-05-4426 TCGA-05-4427 TCGA-05-4430 TCGA-05-4432 TCGA-05-4433 
       30.02        26.01        26.01        25.02        25.02        24.00 
TCGA-05-4434 TCGA-05-5423 TCGA-05-5425 TCGA-05-5429 TCGA-05-5715 TCGA-35-3615 
       15.02         4.96         2.96         0.99         2.04         0.46 
TCGA-35-4122 TCGA-35-4123 TCGA-38-4626 TCGA-38-4627 TCGA-38-4628 TCGA-38-4629 
        7.36         5.95        85.32        37.71        49.02        28.37 
TCGA-38-4630 TCGA-38-4631 TCGA-38-4632 TCGA-38-6178 TCGA-44-2655 TCGA-44-2656 
       35.28        11.64        44.61         5.19        18.87        19.10 
TCGA-44-2657 TCGA-44-2659 TCGA-44-2661 TCGA-44-2662 TCGA-44-2665 TCGA-44-2666 
       13.15        17.39         3.39        15.78        13.15         3.19 
TCGA-44-2668 TCGA-44-3396 TCGA-44-3398 TCGA-44-3918 TCGA-44-3919 TCGA-44-4112 
        8.09        10.22         8.32         6.44         6.21         4.60 
TCGA-44-5643 TCGA-44-5645 TCGA-44-6144 TCGA-44-6145 TCGA-44-6146 TCGA-44-6147 
        3.48         6.84         0.30         3.35         9.93         7.76 
TCGA-44-6148 TCGA-44-6774 TCGA-44-6775 TCGA-44-6776 TCGA-44-6777 TCGA-44-6778 
        3.12         5.42         2.70        63.72        32.45        36.49 
TCGA-44-6779 TCGA-49-4486 TCGA-49-4487 TCGA-49-4488 TCGA-49-4490 TCGA-49-4494 
       16.41        76.21        28.11        28.57        12.66        35.54 
TCGA-49-4501 TCGA-49-4505 TCGA-49-4506 TCGA-49-4507 TCGA-49-4510 TCGA-49-4512 
       46.72        14.07        32.84         8.81        29.46        29.75 
TCGA-49-4514 TCGA-49-6742 TCGA-49-6743 TCGA-49-6744 TCGA-49-6745 TCGA-50-5044 
       43.20        15.02        12.13        12.99         4.93        20.48 
TCGA-50-5045 TCGA-50-5049 TCGA-50-5051 TCGA-50-5055 TCGA-50-5066 TCGA-50-5068 
       71.47        48.82        14.96        25.81         9.76        49.28 
TCGA-50-5072 TCGA-50-5930 TCGA-50-5931 TCGA-50-5932 TCGA-50-5933 TCGA-50-5935 
        8.05         9.27         8.78        35.87        77.88        21.47 
TCGA-50-5936 TCGA-50-5939 TCGA-50-5941 TCGA-50-5942 TCGA-50-5944 TCGA-50-5946 
        8.45        15.12         9.37         4.44        12.26        11.47 
TCGA-50-6591 TCGA-50-6592 TCGA-50-6593 TCGA-50-6594 TCGA-50-6595 TCGA-50-6597 
        3.88        25.51        11.05        12.16         6.21        33.37 
TCGA-55-1592 TCGA-55-1594 TCGA-55-1595 TCGA-55-1596 TCGA-55-5899 TCGA-55-6543 
       23.05        38.73        48.62        45.17         2.86         0.07 
TCGA-55-6642 TCGA-55-6712 TCGA-64-1676 TCGA-64-1677 TCGA-64-1678 TCGA-64-1680 
       32.61         0.79        56.81        20.65        39.09        37.02 
TCGA-64-5774 TCGA-64-5775 TCGA-64-5778 TCGA-64-5779 TCGA-64-5781 TCGA-64-5815 
       83.84         0.10        30.44        16.67        39.52         7.33 
TCGA-67-3770 TCGA-67-3771 TCGA-67-3772 TCGA-67-3773 TCGA-67-3774 TCGA-67-6216 
        0.99         1.97         0.59         2.04         0.59         0.69 
TCGA-67-6217 TCGA-71-6725 TCGA-73-4658 TCGA-73-4662 TCGA-73-4666 TCGA-73-4668 
       13.87         2.01        52.57        29.95        20.28        15.35 
TCGA-73-4670 TCGA-73-4675 TCGA-73-4676 TCGA-73-4677 TCGA-91-6828 TCGA-91-6829 
        0.46         1.32         4.01         1.25         1.22        41.33 
TCGA-91-6831 TCGA-91-6835 TCGA-91-6836 
        1.28         1.15         0.36 

  TTK MUTATED TTK WILD-TYPE 
         0.89          0.07 
  TTK MUTATED TTK WILD-TYPE 
        47.61         85.32 
  TTK MUTATED TTK WILD-TYPE 
        21.65         13.15 
[1] "0.9 - 47.6 (21.6)" "0.1 - 85.3 (13.2)"
   TCGA-05-4249    TCGA-05-4250    TCGA-05-4382    TCGA-05-4384    TCGA-05-4390 
"TTK WILD-TYPE" "TTK WILD-TYPE"   "TTK MUTATED" "TTK WILD-TYPE" "TTK WILD-TYPE" 
   TCGA-05-4396    TCGA-05-4397    TCGA-05-4398    TCGA-05-4402    TCGA-05-4405 
"TTK WILD-TYPE" "TTK WILD-TYPE"   "TTK MUTATED" "TTK WILD-TYPE" "TTK WILD-TYPE" 
   TCGA-05-4415    TCGA-05-4417    TCGA-05-4418    TCGA-05-4420    TCGA-05-4424 
"TTK WILD-TYPE" "TTK WILD-TYPE" "TTK WILD-TYPE" "TTK WILD-TYPE" "TTK WILD-TYPE" 
   TCGA-05-4426    TCGA-05-4427    TCGA-05-4430    TCGA-05-4432    TCGA-05-4433 
"TTK WILD-TYPE" "TTK WILD-TYPE" "TTK WILD-TYPE" "TTK WILD-TYPE" "TTK WILD-TYPE" 
   TCGA-05-4434    TCGA-05-5420    TCGA-05-5423    TCGA-05-5425    TCGA-05-5429 
"TTK WILD-TYPE"   "TTK MUTATED" "TTK WILD-TYPE" "TTK WILD-TYPE" "TTK WILD-TYPE" 
   TCGA-05-5715    TCGA-35-3615    TCGA-35-4122    TCGA-35-4123    TCGA-35-5375 
"TTK WILD-TYPE" "TTK WILD-TYPE" "TTK WILD-TYPE" "TTK WILD-TYPE"   "TTK MUTATED" 
   TCGA-38-4625    TCGA-38-4626    TCGA-38-4627    TCGA-38-4628    TCGA-38-4629 
  "TTK MUTATED" "TTK WILD-TYPE" "TTK WILD-TYPE" "TTK WILD-TYPE" "TTK WILD-TYPE" 
   TCGA-38-4630    TCGA-38-4631    TCGA-38-4632    TCGA-38-6178    TCGA-44-2655 
"TTK WILD-TYPE" "TTK WILD-TYPE" "TTK WILD-TYPE" "TTK WILD-TYPE" "TTK WILD-TYPE" 
   TCGA-44-2656    TCGA-44-2657    TCGA-44-2659    TCGA-44-2661    TCGA-44-2662 
"TTK WILD-TYPE" "TTK WILD-TYPE" "TTK WILD-TYPE" "TTK WILD-TYPE" "TTK WILD-TYPE" 
   TCGA-44-2665    TCGA-44-2666    TCGA-44-2668    TCGA-44-3396    TCGA-44-3398 
"TTK WILD-TYPE" "TTK WILD-TYPE" "TTK WILD-TYPE" "TTK WILD-TYPE" "TTK WILD-TYPE" 
   TCGA-44-3918    TCGA-44-3919    TCGA-44-4112    TCGA-44-5643    TCGA-44-5645 
"TTK WILD-TYPE" "TTK WILD-TYPE" "TTK WILD-TYPE" "TTK WILD-TYPE" "TTK WILD-TYPE" 
   TCGA-44-6144    TCGA-44-6145    TCGA-44-6146    TCGA-44-6147    TCGA-44-6148 
"TTK WILD-TYPE" "TTK WILD-TYPE" "TTK WILD-TYPE" "TTK WILD-TYPE" "TTK WILD-TYPE" 
   TCGA-44-6774    TCGA-44-6775    TCGA-44-6776    TCGA-44-6777    TCGA-44-6778 
"TTK WILD-TYPE" "TTK WILD-TYPE" "TTK WILD-TYPE" "TTK WILD-TYPE" "TTK WILD-TYPE" 
   TCGA-44-6779    TCGA-49-4486    TCGA-49-4487    TCGA-49-4488    TCGA-49-4490 
"TTK WILD-TYPE" "TTK WILD-TYPE" "TTK WILD-TYPE" "TTK WILD-TYPE" "TTK WILD-TYPE" 
   TCGA-49-4494    TCGA-49-4501    TCGA-49-4505    TCGA-49-4506    TCGA-49-4507 
"TTK WILD-TYPE" "TTK WILD-TYPE" "TTK WILD-TYPE" "TTK WILD-TYPE" "TTK WILD-TYPE" 
   TCGA-49-4510    TCGA-49-4512    TCGA-49-4514    TCGA-49-6742    TCGA-49-6743 
"TTK WILD-TYPE" "TTK WILD-TYPE" "TTK WILD-TYPE" "TTK WILD-TYPE" "TTK WILD-TYPE" 
   TCGA-49-6744    TCGA-49-6745    TCGA-50-5044    TCGA-50-5045    TCGA-50-5049 
"TTK WILD-TYPE" "TTK WILD-TYPE" "TTK WILD-TYPE" "TTK WILD-TYPE" "TTK WILD-TYPE" 
   TCGA-50-5051    TCGA-50-5055    TCGA-50-5066    TCGA-50-5068    TCGA-50-5072 
"TTK WILD-TYPE" "TTK WILD-TYPE" "TTK WILD-TYPE" "TTK WILD-TYPE" "TTK WILD-TYPE" 
   TCGA-50-5930    TCGA-50-5931    TCGA-50-5932    TCGA-50-5933    TCGA-50-5935 
"TTK WILD-TYPE" "TTK WILD-TYPE" "TTK WILD-TYPE" "TTK WILD-TYPE" "TTK WILD-TYPE" 
   TCGA-50-5936    TCGA-50-5939    TCGA-50-5941    TCGA-50-5942    TCGA-50-5944 
"TTK WILD-TYPE" "TTK WILD-TYPE" "TTK WILD-TYPE" "TTK WILD-TYPE" "TTK WILD-TYPE" 
   TCGA-50-5946    TCGA-50-6590    TCGA-50-6591    TCGA-50-6592    TCGA-50-6593 
"TTK WILD-TYPE"   "TTK MUTATED" "TTK WILD-TYPE" "TTK WILD-TYPE" "TTK WILD-TYPE" 
   TCGA-50-6594    TCGA-50-6595    TCGA-50-6597    TCGA-55-1592    TCGA-55-1594 
"TTK WILD-TYPE" "TTK WILD-TYPE" "TTK WILD-TYPE" "TTK WILD-TYPE" "TTK WILD-TYPE" 
   TCGA-55-1595    TCGA-55-1596    TCGA-55-5899    TCGA-55-6543    TCGA-55-6642 
"TTK WILD-TYPE" "TTK WILD-TYPE" "TTK WILD-TYPE" "TTK WILD-TYPE" "TTK WILD-TYPE" 
   TCGA-55-6712    TCGA-64-1676    TCGA-64-1677    TCGA-64-1678    TCGA-64-1680 
"TTK WILD-TYPE" "TTK WILD-TYPE" "TTK WILD-TYPE" "TTK WILD-TYPE" "TTK WILD-TYPE" 
   TCGA-64-5774    TCGA-64-5775    TCGA-64-5778    TCGA-64-5779    TCGA-64-5781 
"TTK WILD-TYPE" "TTK WILD-TYPE" "TTK WILD-TYPE" "TTK WILD-TYPE" "TTK WILD-TYPE" 
   TCGA-64-5815    TCGA-67-3770    TCGA-67-3771    TCGA-67-3772    TCGA-67-3773 
"TTK WILD-TYPE" "TTK WILD-TYPE" "TTK WILD-TYPE" "TTK WILD-TYPE" "TTK WILD-TYPE" 
   TCGA-67-3774    TCGA-67-6215    TCGA-67-6216    TCGA-67-6217    TCGA-71-6725 
"TTK WILD-TYPE"   "TTK MUTATED" "TTK WILD-TYPE" "TTK WILD-TYPE" "TTK WILD-TYPE" 
   TCGA-73-4658    TCGA-73-4659    TCGA-73-4662    TCGA-73-4666    TCGA-73-4668 
"TTK WILD-TYPE"   "TTK MUTATED" "TTK WILD-TYPE" "TTK WILD-TYPE" "TTK WILD-TYPE" 
   TCGA-73-4670    TCGA-73-4675    TCGA-73-4676    TCGA-73-4677    TCGA-91-6828 
"TTK WILD-TYPE" "TTK WILD-TYPE" "TTK WILD-TYPE" "TTK WILD-TYPE" "TTK WILD-TYPE" 
   TCGA-91-6829    TCGA-91-6831    TCGA-91-6835    TCGA-91-6836 
"TTK WILD-TYPE" "TTK WILD-TYPE" "TTK WILD-TYPE" "TTK WILD-TYPE" 
   TCGA-05-4249    TCGA-05-4250    TCGA-05-4382    TCGA-05-4384    TCGA-05-4390 
"TTK WILD-TYPE" "TTK WILD-TYPE"   "TTK MUTATED" "TTK WILD-TYPE" "TTK WILD-TYPE" 
   TCGA-05-4396    TCGA-05-4397    TCGA-05-4398    TCGA-05-4402    TCGA-05-4405 
"TTK WILD-TYPE" "TTK WILD-TYPE"   "TTK MUTATED" "TTK WILD-TYPE" "TTK WILD-TYPE" 
   TCGA-05-4415    TCGA-05-4417    TCGA-05-4418    TCGA-05-4420    TCGA-05-4424 
"TTK WILD-TYPE" "TTK WILD-TYPE" "TTK WILD-TYPE" "TTK WILD-TYPE" "TTK WILD-TYPE" 
   TCGA-05-4426    TCGA-05-4427    TCGA-05-4430    TCGA-05-4432    TCGA-05-4433 
"TTK WILD-TYPE" "TTK WILD-TYPE" "TTK WILD-TYPE" "TTK WILD-TYPE" "TTK WILD-TYPE" 
   TCGA-05-4434    TCGA-05-5420    TCGA-05-5423    TCGA-05-5425    TCGA-05-5429 
"TTK WILD-TYPE"   "TTK MUTATED" "TTK WILD-TYPE" "TTK WILD-TYPE" "TTK WILD-TYPE" 
   TCGA-05-5715    TCGA-35-3615    TCGA-35-4122    TCGA-35-4123    TCGA-35-5375 
"TTK WILD-TYPE" "TTK WILD-TYPE" "TTK WILD-TYPE" "TTK WILD-TYPE"   "TTK MUTATED" 
   TCGA-38-4625    TCGA-38-4626    TCGA-38-4627    TCGA-38-4628    TCGA-38-4629 
  "TTK MUTATED" "TTK WILD-TYPE" "TTK WILD-TYPE" "TTK WILD-TYPE" "TTK WILD-TYPE" 
   TCGA-38-4630    TCGA-38-4631    TCGA-38-4632    TCGA-38-6178    TCGA-44-2655 
"TTK WILD-TYPE" "TTK WILD-TYPE" "TTK WILD-TYPE" "TTK WILD-TYPE" "TTK WILD-TYPE" 
   TCGA-44-2656    TCGA-44-2657    TCGA-44-2659    TCGA-44-2661    TCGA-44-2662 
"TTK WILD-TYPE" "TTK WILD-TYPE" "TTK WILD-TYPE" "TTK WILD-TYPE" "TTK WILD-TYPE" 
   TCGA-44-2665    TCGA-44-2666    TCGA-44-2668    TCGA-44-3396    TCGA-44-3398 
"TTK WILD-TYPE" "TTK WILD-TYPE" "TTK WILD-TYPE" "TTK WILD-TYPE" "TTK WILD-TYPE" 
   TCGA-44-3918    TCGA-44-3919    TCGA-44-4112    TCGA-44-5643    TCGA-44-5645 
"TTK WILD-TYPE" "TTK WILD-TYPE" "TTK WILD-TYPE" "TTK WILD-TYPE" "TTK WILD-TYPE" 
   TCGA-44-6144    TCGA-44-6145    TCGA-44-6146    TCGA-44-6147    TCGA-44-6148 
"TTK WILD-TYPE" "TTK WILD-TYPE" "TTK WILD-TYPE" "TTK WILD-TYPE" "TTK WILD-TYPE" 
   TCGA-44-6774    TCGA-44-6775    TCGA-44-6776    TCGA-44-6777    TCGA-44-6778 
"TTK WILD-TYPE" "TTK WILD-TYPE" "TTK WILD-TYPE" "TTK WILD-TYPE" "TTK WILD-TYPE" 
   TCGA-44-6779    TCGA-49-4486    TCGA-49-4487    TCGA-49-4488    TCGA-49-4490 
"TTK WILD-TYPE" "TTK WILD-TYPE" "TTK WILD-TYPE" "TTK WILD-TYPE" "TTK WILD-TYPE" 
   TCGA-49-4494    TCGA-49-4501    TCGA-49-4505    TCGA-49-4506    TCGA-49-4507 
"TTK WILD-TYPE" "TTK WILD-TYPE" "TTK WILD-TYPE" "TTK WILD-TYPE" "TTK WILD-TYPE" 
   TCGA-49-4510    TCGA-49-4512    TCGA-49-4514    TCGA-49-6742    TCGA-49-6743 
"TTK WILD-TYPE" "TTK WILD-TYPE" "TTK WILD-TYPE" "TTK WILD-TYPE" "TTK WILD-TYPE" 
   TCGA-49-6744    TCGA-49-6745    TCGA-50-5044    TCGA-50-5045    TCGA-50-5049 
"TTK WILD-TYPE" "TTK WILD-TYPE" "TTK WILD-TYPE" "TTK WILD-TYPE" "TTK WILD-TYPE" 
   TCGA-50-5051    TCGA-50-5055    TCGA-50-5066    TCGA-50-5068    TCGA-50-5072 
"TTK WILD-TYPE" "TTK WILD-TYPE" "TTK WILD-TYPE" "TTK WILD-TYPE" "TTK WILD-TYPE" 
   TCGA-50-5930    TCGA-50-5931    TCGA-50-5932    TCGA-50-5933    TCGA-50-5935 
"TTK WILD-TYPE" "TTK WILD-TYPE" "TTK WILD-TYPE" "TTK WILD-TYPE" "TTK WILD-TYPE" 
   TCGA-50-5936    TCGA-50-5939    TCGA-50-5941    TCGA-50-5942    TCGA-50-5944 
"TTK WILD-TYPE" "TTK WILD-TYPE" "TTK WILD-TYPE" "TTK WILD-TYPE" "TTK WILD-TYPE" 
   TCGA-50-5946    TCGA-50-6590    TCGA-50-6591    TCGA-50-6592    TCGA-50-6593 
"TTK WILD-TYPE"   "TTK MUTATED" "TTK WILD-TYPE" "TTK WILD-TYPE" "TTK WILD-TYPE" 
   TCGA-50-6594    TCGA-50-6595    TCGA-50-6597    TCGA-55-1592    TCGA-55-1594 
"TTK WILD-TYPE" "TTK WILD-TYPE" "TTK WILD-TYPE" "TTK WILD-TYPE" "TTK WILD-TYPE" 
   TCGA-55-1595    TCGA-55-1596    TCGA-55-5899    TCGA-55-6543    TCGA-55-6642 
"TTK WILD-TYPE" "TTK WILD-TYPE" "TTK WILD-TYPE" "TTK WILD-TYPE" "TTK WILD-TYPE" 
   TCGA-55-6712    TCGA-64-1676    TCGA-64-1677    TCGA-64-1678    TCGA-64-1680 
"TTK WILD-TYPE" "TTK WILD-TYPE" "TTK WILD-TYPE" "TTK WILD-TYPE" "TTK WILD-TYPE" 
   TCGA-64-5774    TCGA-64-5775    TCGA-64-5778    TCGA-64-5779    TCGA-64-5781 
"TTK WILD-TYPE" "TTK WILD-TYPE" "TTK WILD-TYPE" "TTK WILD-TYPE" "TTK WILD-TYPE" 
   TCGA-64-5815    TCGA-67-3770    TCGA-67-3771    TCGA-67-3772    TCGA-67-3773 
"TTK WILD-TYPE" "TTK WILD-TYPE" "TTK WILD-TYPE" "TTK WILD-TYPE" "TTK WILD-TYPE" 
   TCGA-67-3774    TCGA-67-6215    TCGA-67-6216    TCGA-67-6217    TCGA-71-6725 
"TTK WILD-TYPE"   "TTK MUTATED" "TTK WILD-TYPE" "TTK WILD-TYPE" "TTK WILD-TYPE" 
   TCGA-73-4658    TCGA-73-4659    TCGA-73-4662    TCGA-73-4666    TCGA-73-4668 
"TTK WILD-TYPE"   "TTK MUTATED" "TTK WILD-TYPE" "TTK WILD-TYPE" "TTK WILD-TYPE" 
   TCGA-73-4670    TCGA-73-4675    TCGA-73-4676    TCGA-73-4677    TCGA-91-6828 
"TTK WILD-TYPE" "TTK WILD-TYPE" "TTK WILD-TYPE" "TTK WILD-TYPE" "TTK WILD-TYPE" 
   TCGA-91-6829    TCGA-91-6831    TCGA-91-6835    TCGA-91-6836 
"TTK WILD-TYPE" "TTK WILD-TYPE" "TTK WILD-TYPE" "TTK WILD-TYPE" 
   TCGA-05-4249    TCGA-05-4250    TCGA-05-4382    TCGA-05-4384    TCGA-05-4390 
"TTK WILD-TYPE" "TTK WILD-TYPE"   "TTK MUTATED" "TTK WILD-TYPE" "TTK WILD-TYPE" 
   TCGA-05-4396    TCGA-05-4397    TCGA-05-4398    TCGA-05-4402    TCGA-05-4405 
"TTK WILD-TYPE" "TTK WILD-TYPE"   "TTK MUTATED" "TTK WILD-TYPE" "TTK WILD-TYPE" 
   TCGA-05-4415    TCGA-05-4417    TCGA-05-4418    TCGA-05-4420    TCGA-05-4424 
"TTK WILD-TYPE" "TTK WILD-TYPE" "TTK WILD-TYPE" "TTK WILD-TYPE" "TTK WILD-TYPE" 
   TCGA-05-4426    TCGA-05-4427    TCGA-05-4430    TCGA-05-4432    TCGA-05-4433 
"TTK WILD-TYPE" "TTK WILD-TYPE" "TTK WILD-TYPE" "TTK WILD-TYPE" "TTK WILD-TYPE" 
   TCGA-05-4434    TCGA-05-5420    TCGA-05-5423    TCGA-05-5425    TCGA-05-5429 
"TTK WILD-TYPE"   "TTK MUTATED" "TTK WILD-TYPE" "TTK WILD-TYPE" "TTK WILD-TYPE" 
   TCGA-05-5715    TCGA-35-3615    TCGA-35-4122    TCGA-35-4123    TCGA-35-5375 
"TTK WILD-TYPE" "TTK WILD-TYPE" "TTK WILD-TYPE" "TTK WILD-TYPE"   "TTK MUTATED" 
   TCGA-38-4625    TCGA-38-4626    TCGA-38-4627    TCGA-38-4628    TCGA-38-4629 
  "TTK MUTATED" "TTK WILD-TYPE" "TTK WILD-TYPE" "TTK WILD-TYPE" "TTK WILD-TYPE" 
   TCGA-38-4630    TCGA-38-4631    TCGA-38-4632    TCGA-38-6178    TCGA-44-2655 
"TTK WILD-TYPE" "TTK WILD-TYPE" "TTK WILD-TYPE" "TTK WILD-TYPE" "TTK WILD-TYPE" 
   TCGA-44-2656    TCGA-44-2657    TCGA-44-2659    TCGA-44-2661    TCGA-44-2662 
"TTK WILD-TYPE" "TTK WILD-TYPE" "TTK WILD-TYPE" "TTK WILD-TYPE" "TTK WILD-TYPE" 
   TCGA-44-2665    TCGA-44-2666    TCGA-44-2668    TCGA-44-3396    TCGA-44-3398 
"TTK WILD-TYPE" "TTK WILD-TYPE" "TTK WILD-TYPE" "TTK WILD-TYPE" "TTK WILD-TYPE" 
   TCGA-44-3918    TCGA-44-3919    TCGA-44-4112    TCGA-44-5643    TCGA-44-5645 
"TTK WILD-TYPE" "TTK WILD-TYPE" "TTK WILD-TYPE" "TTK WILD-TYPE" "TTK WILD-TYPE" 
   TCGA-44-6144    TCGA-44-6145    TCGA-44-6146    TCGA-44-6147    TCGA-44-6148 
"TTK WILD-TYPE" "TTK WILD-TYPE" "TTK WILD-TYPE" "TTK WILD-TYPE" "TTK WILD-TYPE" 
   TCGA-44-6774    TCGA-44-6775    TCGA-44-6776    TCGA-44-6777    TCGA-44-6778 
"TTK WILD-TYPE" "TTK WILD-TYPE" "TTK WILD-TYPE" "TTK WILD-TYPE" "TTK WILD-TYPE" 
   TCGA-44-6779    TCGA-49-4486    TCGA-49-4487    TCGA-49-4488    TCGA-49-4490 
"TTK WILD-TYPE" "TTK WILD-TYPE" "TTK WILD-TYPE" "TTK WILD-TYPE" "TTK WILD-TYPE" 
   TCGA-49-4494    TCGA-49-4501    TCGA-49-4505    TCGA-49-4506    TCGA-49-4507 
"TTK WILD-TYPE" "TTK WILD-TYPE" "TTK WILD-TYPE" "TTK WILD-TYPE" "TTK WILD-TYPE" 
   TCGA-49-4510    TCGA-49-4512    TCGA-49-4514    TCGA-49-6742    TCGA-49-6743 
"TTK WILD-TYPE" "TTK WILD-TYPE" "TTK WILD-TYPE" "TTK WILD-TYPE" "TTK WILD-TYPE" 
   TCGA-49-6744    TCGA-49-6745    TCGA-50-5044    TCGA-50-5045    TCGA-50-5049 
"TTK WILD-TYPE" "TTK WILD-TYPE" "TTK WILD-TYPE" "TTK WILD-TYPE" "TTK WILD-TYPE" 
   TCGA-50-5051    TCGA-50-5055    TCGA-50-5066    TCGA-50-5068    TCGA-50-5072 
"TTK WILD-TYPE" "TTK WILD-TYPE" "TTK WILD-TYPE" "TTK WILD-TYPE" "TTK WILD-TYPE" 
   TCGA-50-5930    TCGA-50-5931    TCGA-50-5932    TCGA-50-5933    TCGA-50-5935 
"TTK WILD-TYPE" "TTK WILD-TYPE" "TTK WILD-TYPE" "TTK WILD-TYPE" "TTK WILD-TYPE" 
   TCGA-50-5936    TCGA-50-5939    TCGA-50-5941    TCGA-50-5942    TCGA-50-5944 
"TTK WILD-TYPE" "TTK WILD-TYPE" "TTK WILD-TYPE" "TTK WILD-TYPE" "TTK WILD-TYPE" 
   TCGA-50-5946    TCGA-50-6590    TCGA-50-6591    TCGA-50-6592    TCGA-50-6593 
"TTK WILD-TYPE"   "TTK MUTATED" "TTK WILD-TYPE" "TTK WILD-TYPE" "TTK WILD-TYPE" 
   TCGA-50-6594    TCGA-50-6595    TCGA-50-6597    TCGA-55-1592    TCGA-55-1594 
"TTK WILD-TYPE" "TTK WILD-TYPE" "TTK WILD-TYPE" "TTK WILD-TYPE" "TTK WILD-TYPE" 
   TCGA-55-1595    TCGA-55-1596    TCGA-55-5899    TCGA-55-6543    TCGA-55-6642 
"TTK WILD-TYPE" "TTK WILD-TYPE" "TTK WILD-TYPE" "TTK WILD-TYPE" "TTK WILD-TYPE" 
   TCGA-55-6712    TCGA-64-1676    TCGA-64-1677    TCGA-64-1678    TCGA-64-1680 
"TTK WILD-TYPE" "TTK WILD-TYPE" "TTK WILD-TYPE" "TTK WILD-TYPE" "TTK WILD-TYPE" 
   TCGA-64-5774    TCGA-64-5775    TCGA-64-5778    TCGA-64-5779    TCGA-64-5781 
"TTK WILD-TYPE" "TTK WILD-TYPE" "TTK WILD-TYPE" "TTK WILD-TYPE" "TTK WILD-TYPE" 
   TCGA-64-5815    TCGA-67-3770    TCGA-67-3771    TCGA-67-3772    TCGA-67-3773 
"TTK WILD-TYPE" "TTK WILD-TYPE" "TTK WILD-TYPE" "TTK WILD-TYPE" "TTK WILD-TYPE" 
   TCGA-67-3774    TCGA-67-6215    TCGA-67-6216    TCGA-67-6217    TCGA-71-6725 
"TTK WILD-TYPE"   "TTK MUTATED" "TTK WILD-TYPE" "TTK WILD-TYPE" "TTK WILD-TYPE" 
   TCGA-73-4658    TCGA-73-4659    TCGA-73-4662    TCGA-73-4666    TCGA-73-4668 
"TTK WILD-TYPE"   "TTK MUTATED" "TTK WILD-TYPE" "TTK WILD-TYPE" "TTK WILD-TYPE" 
   TCGA-73-4670    TCGA-73-4675    TCGA-73-4676    TCGA-73-4677    TCGA-91-6828 
"TTK WILD-TYPE" "TTK WILD-TYPE" "TTK WILD-TYPE" "TTK WILD-TYPE" "TTK WILD-TYPE" 
   TCGA-91-6829    TCGA-91-6831    TCGA-91-6835    TCGA-91-6836 
"TTK WILD-TYPE" "TTK WILD-TYPE" "TTK WILD-TYPE" "TTK WILD-TYPE" 
[1] "hr=" "1.7"
D218V2, continuous
D218V3, binary
[1] "tbl2"
               cls
clus            [,1] [,2]
  TTK MUTATED      4    4
  TTK WILD-TYPE   89   75
        clus
vv       TTK MUTATED TTK WILD-TYPE
  FEMALE           4            89
  MALE             4            75
D218V4, continuous
[1] "Remove cluster labels:" "TTK MUTATED"           
clus
  TTK MUTATED TTK WILD-TYPE 
            2            10 
   TCGA-35-4122    TCGA-35-4123    TCGA-64-1677    TCGA-64-5778    TCGA-71-6725 
"TTK WILD-TYPE" "TTK WILD-TYPE" "TTK WILD-TYPE" "TTK WILD-TYPE" "TTK WILD-TYPE" 
   TCGA-73-4662    TCGA-73-4666    TCGA-73-4668    TCGA-73-4676    TCGA-75-5122 
"TTK WILD-TYPE" "TTK WILD-TYPE" "TTK WILD-TYPE" "TTK WILD-TYPE" "TTK WILD-TYPE" 
D218V5, multiclass
D218V6, multiclass
    clus
vv   TTK MUTATED TTK WILD-TYPE
  T1           0            41
  T2           7           101
  T3           0            14
  T4           1             7
D218V7, multiclass
       clus
vv      TTK MUTATED TTK WILD-TYPE
  N0              4            91
  N1              0            37
  N2+N3           4            31
D218V8, multiclass
    clus
vv   TTK MUTATED TTK WILD-TYPE
  M0           8           129
  M1           0             9
  MX           0            22
D218V9, multiclass
     clus
vv    TTK MUTATED TTK WILD-TYPE
  I             4            84
  II            0            33
  III           4            35
  IV            0             9
D218V10, binary
[1] "tbl2"
               cls
clus            [,1] [,2]
  TTK MUTATED      0    8
  TTK WILD-TYPE   16  148
     clus
vv    TTK MUTATED TTK WILD-TYPE
  NO            0            16
  YES           8           148
D218V11, continuous
D218V12, continuous
D218V13, multiclass
                                             clus
vv                                            TTK MUTATED TTK WILD-TYPE
  CURRENT REFORMED SMOKER FOR < OR = 15 YEARS           4            58
  CURRENT REFORMED SMOKER FOR > 15 YEARS                1            45
  CURRENT SMOKER                                        2            26
  LIFELONG NON-SMOKER                                   1            23
D218V14, continuous

Clustering(219) Variable = TLR4 MUTATION ANALYSIS
D219V1, survival
                sevent
clus2             0  1
  TLR4 MUTATED    9 11
  TLR4 WILD-TYPE 90 39
  TLR4 MUTATED TLR4 WILD-TYPE 
            20            129 
  TLR4 MUTATED TLR4 WILD-TYPE 
            11             39 
$`TLR4 MUTATED`
TCGA-05-4250 TCGA-05-4382 TCGA-05-4396 TCGA-05-4398 TCGA-05-4424 TCGA-05-4427 
        3.98        19.92         9.96        47.05        30.02        26.01 
TCGA-38-4626 TCGA-38-4632 TCGA-44-6147 TCGA-44-6777 TCGA-49-6742 TCGA-50-5049 
       85.32        44.61         7.76        32.45        15.02        48.82 
TCGA-50-5068 TCGA-50-5933 TCGA-50-6590 TCGA-50-6595 TCGA-64-5781 TCGA-73-4659 
       49.28        77.88        42.31         6.21        39.52        23.38 
TCGA-73-4677 TCGA-91-6829 
        1.25        41.33 

$`TLR4 WILD-TYPE`
TCGA-05-4249 TCGA-05-4384 TCGA-05-4390 TCGA-05-4397 TCGA-05-4402 TCGA-05-4405 
       38.07        14.01        37.02        24.03         8.02        20.05 
TCGA-05-4415 TCGA-05-4417 TCGA-05-4418 TCGA-05-4420 TCGA-05-4426 TCGA-05-4430 
        2.96        14.93         8.98        29.95        26.01        25.02 
TCGA-05-4432 TCGA-05-4433 TCGA-05-4434 TCGA-05-5420 TCGA-05-5423 TCGA-05-5425 
       25.02        24.00        15.02         1.02         4.96         2.96 
TCGA-05-5429 TCGA-05-5715 TCGA-35-3615 TCGA-35-4122 TCGA-35-4123 TCGA-35-5375 
        0.99         2.04         0.46         7.36         5.95         8.68 
TCGA-38-4625 TCGA-38-4627 TCGA-38-4628 TCGA-38-4629 TCGA-38-4630 TCGA-38-4631 
       47.61        37.71        49.02        28.37        35.28        11.64 
TCGA-38-6178 TCGA-44-2655 TCGA-44-2656 TCGA-44-2657 TCGA-44-2659 TCGA-44-2661 
        5.19        18.87        19.10        13.15        17.39         3.39 
TCGA-44-2662 TCGA-44-2665 TCGA-44-2666 TCGA-44-2668 TCGA-44-3396 TCGA-44-3398 
       15.78        13.15         3.19         8.09        10.22         8.32 
TCGA-44-3918 TCGA-44-3919 TCGA-44-4112 TCGA-44-5643 TCGA-44-5645 TCGA-44-6144 
        6.44         6.21         4.60         3.48         6.84         0.30 
TCGA-44-6145 TCGA-44-6146 TCGA-44-6148 TCGA-44-6774 TCGA-44-6775 TCGA-44-6776 
        3.35         9.93         3.12         5.42         2.70        63.72 
TCGA-44-6778 TCGA-44-6779 TCGA-49-4486 TCGA-49-4487 TCGA-49-4488 TCGA-49-4490 
       36.49        16.41        76.21        28.11        28.57        12.66 
TCGA-49-4494 TCGA-49-4501 TCGA-49-4505 TCGA-49-4506 TCGA-49-4507 TCGA-49-4510 
       35.54        46.72        14.07        32.84         8.81        29.46 
TCGA-49-4512 TCGA-49-4514 TCGA-49-6743 TCGA-49-6744 TCGA-49-6745 TCGA-50-5044 
       29.75        43.20        12.13        12.99         4.93        20.48 
TCGA-50-5045 TCGA-50-5051 TCGA-50-5055 TCGA-50-5066 TCGA-50-5072 TCGA-50-5930 
       71.47        14.96        25.81         9.76         8.05         9.27 
TCGA-50-5931 TCGA-50-5932 TCGA-50-5935 TCGA-50-5936 TCGA-50-5939 TCGA-50-5941 
        8.78        35.87        21.47         8.45        15.12         9.37 
TCGA-50-5942 TCGA-50-5944 TCGA-50-5946 TCGA-50-6591 TCGA-50-6592 TCGA-50-6593 
        4.44        12.26        11.47         3.88        25.51        11.05 
TCGA-50-6594 TCGA-50-6597 TCGA-55-1592 TCGA-55-1594 TCGA-55-1595 TCGA-55-1596 
       12.16        33.37        23.05        38.73        48.62        45.17 
TCGA-55-5899 TCGA-55-6543 TCGA-55-6642 TCGA-55-6712 TCGA-64-1676 TCGA-64-1677 
        2.86         0.07        32.61         0.79        56.81        20.65 
TCGA-64-1678 TCGA-64-1680 TCGA-64-5774 TCGA-64-5775 TCGA-64-5778 TCGA-64-5779 
       39.09        37.02        83.84         0.10        30.44        16.67 
TCGA-64-5815 TCGA-67-3770 TCGA-67-3771 TCGA-67-3772 TCGA-67-3773 TCGA-67-3774 
        7.33         0.99         1.97         0.59         2.04         0.59 
TCGA-67-6215 TCGA-67-6216 TCGA-67-6217 TCGA-71-6725 TCGA-73-4658 TCGA-73-4662 
        0.89         0.69        13.87         2.01        52.57        29.95 
TCGA-73-4666 TCGA-73-4668 TCGA-73-4670 TCGA-73-4675 TCGA-73-4676 TCGA-91-6828 
       20.28        15.35         0.46         1.32         4.01         1.22 
TCGA-91-6831 TCGA-91-6835 TCGA-91-6836 
        1.28         1.15         0.36 

  TLR4 MUTATED TLR4 WILD-TYPE 
          1.25           0.07 
  TLR4 MUTATED TLR4 WILD-TYPE 
         85.32          83.84 
  TLR4 MUTATED TLR4 WILD-TYPE 
        31.235         12.260 
[1] "1.2 - 85.3 (31.2)" "0.1 - 83.8 (12.3)"
    TCGA-05-4249     TCGA-05-4250     TCGA-05-4382     TCGA-05-4384 
"TLR4 WILD-TYPE"   "TLR4 MUTATED"   "TLR4 MUTATED" "TLR4 WILD-TYPE" 
    TCGA-05-4390     TCGA-05-4396     TCGA-05-4397     TCGA-05-4398 
"TLR4 WILD-TYPE"   "TLR4 MUTATED" "TLR4 WILD-TYPE"   "TLR4 MUTATED" 
    TCGA-05-4402     TCGA-05-4405     TCGA-05-4415     TCGA-05-4417 
"TLR4 WILD-TYPE" "TLR4 WILD-TYPE" "TLR4 WILD-TYPE" "TLR4 WILD-TYPE" 
    TCGA-05-4418     TCGA-05-4420     TCGA-05-4424     TCGA-05-4426 
"TLR4 WILD-TYPE" "TLR4 WILD-TYPE"   "TLR4 MUTATED" "TLR4 WILD-TYPE" 
    TCGA-05-4427     TCGA-05-4430     TCGA-05-4432     TCGA-05-4433 
  "TLR4 MUTATED" "TLR4 WILD-TYPE" "TLR4 WILD-TYPE" "TLR4 WILD-TYPE" 
    TCGA-05-4434     TCGA-05-5420     TCGA-05-5423     TCGA-05-5425 
"TLR4 WILD-TYPE" "TLR4 WILD-TYPE" "TLR4 WILD-TYPE" "TLR4 WILD-TYPE" 
    TCGA-05-5429     TCGA-05-5715     TCGA-35-3615     TCGA-35-4122 
"TLR4 WILD-TYPE" "TLR4 WILD-TYPE" "TLR4 WILD-TYPE" "TLR4 WILD-TYPE" 
    TCGA-35-4123     TCGA-35-5375     TCGA-38-4625     TCGA-38-4626 
"TLR4 WILD-TYPE" "TLR4 WILD-TYPE" "TLR4 WILD-TYPE"   "TLR4 MUTATED" 
    TCGA-38-4627     TCGA-38-4628     TCGA-38-4629     TCGA-38-4630 
"TLR4 WILD-TYPE" "TLR4 WILD-TYPE" "TLR4 WILD-TYPE" "TLR4 WILD-TYPE" 
    TCGA-38-4631     TCGA-38-4632     TCGA-38-6178     TCGA-44-2655 
"TLR4 WILD-TYPE"   "TLR4 MUTATED" "TLR4 WILD-TYPE" "TLR4 WILD-TYPE" 
    TCGA-44-2656     TCGA-44-2657     TCGA-44-2659     TCGA-44-2661 
"TLR4 WILD-TYPE" "TLR4 WILD-TYPE" "TLR4 WILD-TYPE" "TLR4 WILD-TYPE" 
    TCGA-44-2662     TCGA-44-2665     TCGA-44-2666     TCGA-44-2668 
"TLR4 WILD-TYPE" "TLR4 WILD-TYPE" "TLR4 WILD-TYPE" "TLR4 WILD-TYPE" 
    TCGA-44-3396     TCGA-44-3398     TCGA-44-3918     TCGA-44-3919 
"TLR4 WILD-TYPE" "TLR4 WILD-TYPE" "TLR4 WILD-TYPE" "TLR4 WILD-TYPE" 
    TCGA-44-4112     TCGA-44-5643     TCGA-44-5645     TCGA-44-6144 
"TLR4 WILD-TYPE" "TLR4 WILD-TYPE" "TLR4 WILD-TYPE" "TLR4 WILD-TYPE" 
    TCGA-44-6145     TCGA-44-6146     TCGA-44-6147     TCGA-44-6148 
"TLR4 WILD-TYPE" "TLR4 WILD-TYPE"   "TLR4 MUTATED" "TLR4 WILD-TYPE" 
    TCGA-44-6774     TCGA-44-6775     TCGA-44-6776     TCGA-44-6777 
"TLR4 WILD-TYPE" "TLR4 WILD-TYPE" "TLR4 WILD-TYPE"   "TLR4 MUTATED" 
    TCGA-44-6778     TCGA-44-6779     TCGA-49-4486     TCGA-49-4487 
"TLR4 WILD-TYPE" "TLR4 WILD-TYPE" "TLR4 WILD-TYPE" "TLR4 WILD-TYPE" 
    TCGA-49-4488     TCGA-49-4490     TCGA-49-4494     TCGA-49-4501 
"TLR4 WILD-TYPE" "TLR4 WILD-TYPE" "TLR4 WILD-TYPE" "TLR4 WILD-TYPE" 
    TCGA-49-4505     TCGA-49-4506     TCGA-49-4507     TCGA-49-4510 
"TLR4 WILD-TYPE" "TLR4 WILD-TYPE" "TLR4 WILD-TYPE" "TLR4 WILD-TYPE" 
    TCGA-49-4512     TCGA-49-4514     TCGA-49-6742     TCGA-49-6743 
"TLR4 WILD-TYPE" "TLR4 WILD-TYPE"   "TLR4 MUTATED" "TLR4 WILD-TYPE" 
    TCGA-49-6744     TCGA-49-6745     TCGA-50-5044     TCGA-50-5045 
"TLR4 WILD-TYPE" "TLR4 WILD-TYPE" "TLR4 WILD-TYPE" "TLR4 WILD-TYPE" 
    TCGA-50-5049     TCGA-50-5051     TCGA-50-5055     TCGA-50-5066 
  "TLR4 MUTATED" "TLR4 WILD-TYPE" "TLR4 WILD-TYPE" "TLR4 WILD-TYPE" 
    TCGA-50-5068     TCGA-50-5072     TCGA-50-5930     TCGA-50-5931 
  "TLR4 MUTATED" "TLR4 WILD-TYPE" "TLR4 WILD-TYPE" "TLR4 WILD-TYPE" 
    TCGA-50-5932     TCGA-50-5933     TCGA-50-5935     TCGA-50-5936 
"TLR4 WILD-TYPE"   "TLR4 MUTATED" "TLR4 WILD-TYPE" "TLR4 WILD-TYPE" 
    TCGA-50-5939     TCGA-50-5941     TCGA-50-5942     TCGA-50-5944 
"TLR4 WILD-TYPE" "TLR4 WILD-TYPE" "TLR4 WILD-TYPE" "TLR4 WILD-TYPE" 
    TCGA-50-5946     TCGA-50-6590     TCGA-50-6591     TCGA-50-6592 
"TLR4 WILD-TYPE"   "TLR4 MUTATED" "TLR4 WILD-TYPE" "TLR4 WILD-TYPE" 
    TCGA-50-6593     TCGA-50-6594     TCGA-50-6595     TCGA-50-6597 
"TLR4 WILD-TYPE" "TLR4 WILD-TYPE"   "TLR4 MUTATED" "TLR4 WILD-TYPE" 
    TCGA-55-1592     TCGA-55-1594     TCGA-55-1595     TCGA-55-1596 
"TLR4 WILD-TYPE" "TLR4 WILD-TYPE" "TLR4 WILD-TYPE" "TLR4 WILD-TYPE" 
    TCGA-55-5899     TCGA-55-6543     TCGA-55-6642     TCGA-55-6712 
"TLR4 WILD-TYPE" "TLR4 WILD-TYPE" "TLR4 WILD-TYPE" "TLR4 WILD-TYPE" 
    TCGA-64-1676     TCGA-64-1677     TCGA-64-1678     TCGA-64-1680 
"TLR4 WILD-TYPE" "TLR4 WILD-TYPE" "TLR4 WILD-TYPE" "TLR4 WILD-TYPE" 
    TCGA-64-5774     TCGA-64-5775     TCGA-64-5778     TCGA-64-5779 
"TLR4 WILD-TYPE" "TLR4 WILD-TYPE" "TLR4 WILD-TYPE" "TLR4 WILD-TYPE" 
    TCGA-64-5781     TCGA-64-5815     TCGA-67-3770     TCGA-67-3771 
  "TLR4 MUTATED" "TLR4 WILD-TYPE" "TLR4 WILD-TYPE" "TLR4 WILD-TYPE" 
    TCGA-67-3772     TCGA-67-3773     TCGA-67-3774     TCGA-67-6215 
"TLR4 WILD-TYPE" "TLR4 WILD-TYPE" "TLR4 WILD-TYPE" "TLR4 WILD-TYPE" 
    TCGA-67-6216     TCGA-67-6217     TCGA-71-6725     TCGA-73-4658 
"TLR4 WILD-TYPE" "TLR4 WILD-TYPE" "TLR4 WILD-TYPE" "TLR4 WILD-TYPE" 
    TCGA-73-4659     TCGA-73-4662     TCGA-73-4666     TCGA-73-4668 
  "TLR4 MUTATED" "TLR4 WILD-TYPE" "TLR4 WILD-TYPE" "TLR4 WILD-TYPE" 
    TCGA-73-4670     TCGA-73-4675     TCGA-73-4676     TCGA-73-4677 
"TLR4 WILD-TYPE" "TLR4 WILD-TYPE" "TLR4 WILD-TYPE"   "TLR4 MUTATED" 
    TCGA-91-6828     TCGA-91-6829     TCGA-91-6831     TCGA-91-6835 
"TLR4 WILD-TYPE"   "TLR4 MUTATED" "TLR4 WILD-TYPE" "TLR4 WILD-TYPE" 
    TCGA-91-6836 
"TLR4 WILD-TYPE" 
    TCGA-05-4249     TCGA-05-4250     TCGA-05-4382     TCGA-05-4384 
"TLR4 WILD-TYPE"   "TLR4 MUTATED"   "TLR4 MUTATED" "TLR4 WILD-TYPE" 
    TCGA-05-4390     TCGA-05-4396     TCGA-05-4397     TCGA-05-4398 
"TLR4 WILD-TYPE"   "TLR4 MUTATED" "TLR4 WILD-TYPE"   "TLR4 MUTATED" 
    TCGA-05-4402     TCGA-05-4405     TCGA-05-4415     TCGA-05-4417 
"TLR4 WILD-TYPE" "TLR4 WILD-TYPE" "TLR4 WILD-TYPE" "TLR4 WILD-TYPE" 
    TCGA-05-4418     TCGA-05-4420     TCGA-05-4424     TCGA-05-4426 
"TLR4 WILD-TYPE" "TLR4 WILD-TYPE"   "TLR4 MUTATED" "TLR4 WILD-TYPE" 
    TCGA-05-4427     TCGA-05-4430     TCGA-05-4432     TCGA-05-4433 
  "TLR4 MUTATED" "TLR4 WILD-TYPE" "TLR4 WILD-TYPE" "TLR4 WILD-TYPE" 
    TCGA-05-4434     TCGA-05-5420     TCGA-05-5423     TCGA-05-5425 
"TLR4 WILD-TYPE" "TLR4 WILD-TYPE" "TLR4 WILD-TYPE" "TLR4 WILD-TYPE" 
    TCGA-05-5429     TCGA-05-5715     TCGA-35-3615     TCGA-35-4122 
"TLR4 WILD-TYPE" "TLR4 WILD-TYPE" "TLR4 WILD-TYPE" "TLR4 WILD-TYPE" 
    TCGA-35-4123     TCGA-35-5375     TCGA-38-4625     TCGA-38-4626 
"TLR4 WILD-TYPE" "TLR4 WILD-TYPE" "TLR4 WILD-TYPE"   "TLR4 MUTATED" 
    TCGA-38-4627     TCGA-38-4628     TCGA-38-4629     TCGA-38-4630 
"TLR4 WILD-TYPE" "TLR4 WILD-TYPE" "TLR4 WILD-TYPE" "TLR4 WILD-TYPE" 
    TCGA-38-4631     TCGA-38-4632     TCGA-38-6178     TCGA-44-2655 
"TLR4 WILD-TYPE"   "TLR4 MUTATED" "TLR4 WILD-TYPE" "TLR4 WILD-TYPE" 
    TCGA-44-2656     TCGA-44-2657     TCGA-44-2659     TCGA-44-2661 
"TLR4 WILD-TYPE" "TLR4 WILD-TYPE" "TLR4 WILD-TYPE" "TLR4 WILD-TYPE" 
    TCGA-44-2662     TCGA-44-2665     TCGA-44-2666     TCGA-44-2668 
"TLR4 WILD-TYPE" "TLR4 WILD-TYPE" "TLR4 WILD-TYPE" "TLR4 WILD-TYPE" 
    TCGA-44-3396     TCGA-44-3398     TCGA-44-3918     TCGA-44-3919 
"TLR4 WILD-TYPE" "TLR4 WILD-TYPE" "TLR4 WILD-TYPE" "TLR4 WILD-TYPE" 
    TCGA-44-4112     TCGA-44-5643     TCGA-44-5645     TCGA-44-6144 
"TLR4 WILD-TYPE" "TLR4 WILD-TYPE" "TLR4 WILD-TYPE" "TLR4 WILD-TYPE" 
    TCGA-44-6145     TCGA-44-6146     TCGA-44-6147     TCGA-44-6148 
"TLR4 WILD-TYPE" "TLR4 WILD-TYPE"   "TLR4 MUTATED" "TLR4 WILD-TYPE" 
    TCGA-44-6774     TCGA-44-6775     TCGA-44-6776     TCGA-44-6777 
"TLR4 WILD-TYPE" "TLR4 WILD-TYPE" "TLR4 WILD-TYPE"   "TLR4 MUTATED" 
    TCGA-44-6778     TCGA-44-6779     TCGA-49-4486     TCGA-49-4487 
"TLR4 WILD-TYPE" "TLR4 WILD-TYPE" "TLR4 WILD-TYPE" "TLR4 WILD-TYPE" 
    TCGA-49-4488     TCGA-49-4490     TCGA-49-4494     TCGA-49-4501 
"TLR4 WILD-TYPE" "TLR4 WILD-TYPE" "TLR4 WILD-TYPE" "TLR4 WILD-TYPE" 
    TCGA-49-4505     TCGA-49-4506     TCGA-49-4507     TCGA-49-4510 
"TLR4 WILD-TYPE" "TLR4 WILD-TYPE" "TLR4 WILD-TYPE" "TLR4 WILD-TYPE" 
    TCGA-49-4512     TCGA-49-4514     TCGA-49-6742     TCGA-49-6743 
"TLR4 WILD-TYPE" "TLR4 WILD-TYPE"   "TLR4 MUTATED" "TLR4 WILD-TYPE" 
    TCGA-49-6744     TCGA-49-6745     TCGA-50-5044     TCGA-50-5045 
"TLR4 WILD-TYPE" "TLR4 WILD-TYPE" "TLR4 WILD-TYPE" "TLR4 WILD-TYPE" 
    TCGA-50-5049     TCGA-50-5051     TCGA-50-5055     TCGA-50-5066 
  "TLR4 MUTATED" "TLR4 WILD-TYPE" "TLR4 WILD-TYPE" "TLR4 WILD-TYPE" 
    TCGA-50-5068     TCGA-50-5072     TCGA-50-5930     TCGA-50-5931 
  "TLR4 MUTATED" "TLR4 WILD-TYPE" "TLR4 WILD-TYPE" "TLR4 WILD-TYPE" 
    TCGA-50-5932     TCGA-50-5933     TCGA-50-5935     TCGA-50-5936 
"TLR4 WILD-TYPE"   "TLR4 MUTATED" "TLR4 WILD-TYPE" "TLR4 WILD-TYPE" 
    TCGA-50-5939     TCGA-50-5941     TCGA-50-5942     TCGA-50-5944 
"TLR4 WILD-TYPE" "TLR4 WILD-TYPE" "TLR4 WILD-TYPE" "TLR4 WILD-TYPE" 
    TCGA-50-5946     TCGA-50-6590     TCGA-50-6591     TCGA-50-6592 
"TLR4 WILD-TYPE"   "TLR4 MUTATED" "TLR4 WILD-TYPE" "TLR4 WILD-TYPE" 
    TCGA-50-6593     TCGA-50-6594     TCGA-50-6595     TCGA-50-6597 
"TLR4 WILD-TYPE" "TLR4 WILD-TYPE"   "TLR4 MUTATED" "TLR4 WILD-TYPE" 
    TCGA-55-1592     TCGA-55-1594     TCGA-55-1595     TCGA-55-1596 
"TLR4 WILD-TYPE" "TLR4 WILD-TYPE" "TLR4 WILD-TYPE" "TLR4 WILD-TYPE" 
    TCGA-55-5899     TCGA-55-6543     TCGA-55-6642     TCGA-55-6712 
"TLR4 WILD-TYPE" "TLR4 WILD-TYPE" "TLR4 WILD-TYPE" "TLR4 WILD-TYPE" 
    TCGA-64-1676     TCGA-64-1677     TCGA-64-1678     TCGA-64-1680 
"TLR4 WILD-TYPE" "TLR4 WILD-TYPE" "TLR4 WILD-TYPE" "TLR4 WILD-TYPE" 
    TCGA-64-5774     TCGA-64-5775     TCGA-64-5778     TCGA-64-5779 
"TLR4 WILD-TYPE" "TLR4 WILD-TYPE" "TLR4 WILD-TYPE" "TLR4 WILD-TYPE" 
    TCGA-64-5781     TCGA-64-5815     TCGA-67-3770     TCGA-67-3771 
  "TLR4 MUTATED" "TLR4 WILD-TYPE" "TLR4 WILD-TYPE" "TLR4 WILD-TYPE" 
    TCGA-67-3772     TCGA-67-3773     TCGA-67-3774     TCGA-67-6215 
"TLR4 WILD-TYPE" "TLR4 WILD-TYPE" "TLR4 WILD-TYPE" "TLR4 WILD-TYPE" 
    TCGA-67-6216     TCGA-67-6217     TCGA-71-6725     TCGA-73-4658 
"TLR4 WILD-TYPE" "TLR4 WILD-TYPE" "TLR4 WILD-TYPE" "TLR4 WILD-TYPE" 
    TCGA-73-4659     TCGA-73-4662     TCGA-73-4666     TCGA-73-4668 
  "TLR4 MUTATED" "TLR4 WILD-TYPE" "TLR4 WILD-TYPE" "TLR4 WILD-TYPE" 
    TCGA-73-4670     TCGA-73-4675     TCGA-73-4676     TCGA-73-4677 
"TLR4 WILD-TYPE" "TLR4 WILD-TYPE" "TLR4 WILD-TYPE"   "TLR4 MUTATED" 
    TCGA-91-6828     TCGA-91-6829     TCGA-91-6831     TCGA-91-6835 
"TLR4 WILD-TYPE"   "TLR4 MUTATED" "TLR4 WILD-TYPE" "TLR4 WILD-TYPE" 
    TCGA-91-6836 
"TLR4 WILD-TYPE" 
    TCGA-05-4249     TCGA-05-4250     TCGA-05-4382     TCGA-05-4384 
"TLR4 WILD-TYPE"   "TLR4 MUTATED"   "TLR4 MUTATED" "TLR4 WILD-TYPE" 
    TCGA-05-4390     TCGA-05-4396     TCGA-05-4397     TCGA-05-4398 
"TLR4 WILD-TYPE"   "TLR4 MUTATED" "TLR4 WILD-TYPE"   "TLR4 MUTATED" 
    TCGA-05-4402     TCGA-05-4405     TCGA-05-4415     TCGA-05-4417 
"TLR4 WILD-TYPE" "TLR4 WILD-TYPE" "TLR4 WILD-TYPE" "TLR4 WILD-TYPE" 
    TCGA-05-4418     TCGA-05-4420     TCGA-05-4424     TCGA-05-4426 
"TLR4 WILD-TYPE" "TLR4 WILD-TYPE"   "TLR4 MUTATED" "TLR4 WILD-TYPE" 
    TCGA-05-4427     TCGA-05-4430     TCGA-05-4432     TCGA-05-4433 
  "TLR4 MUTATED" "TLR4 WILD-TYPE" "TLR4 WILD-TYPE" "TLR4 WILD-TYPE" 
    TCGA-05-4434     TCGA-05-5420     TCGA-05-5423     TCGA-05-5425 
"TLR4 WILD-TYPE" "TLR4 WILD-TYPE" "TLR4 WILD-TYPE" "TLR4 WILD-TYPE" 
    TCGA-05-5429     TCGA-05-5715     TCGA-35-3615     TCGA-35-4122 
"TLR4 WILD-TYPE" "TLR4 WILD-TYPE" "TLR4 WILD-TYPE" "TLR4 WILD-TYPE" 
    TCGA-35-4123     TCGA-35-5375     TCGA-38-4625     TCGA-38-4626 
"TLR4 WILD-TYPE" "TLR4 WILD-TYPE" "TLR4 WILD-TYPE"   "TLR4 MUTATED" 
    TCGA-38-4627     TCGA-38-4628     TCGA-38-4629     TCGA-38-4630 
"TLR4 WILD-TYPE" "TLR4 WILD-TYPE" "TLR4 WILD-TYPE" "TLR4 WILD-TYPE" 
    TCGA-38-4631     TCGA-38-4632     TCGA-38-6178     TCGA-44-2655 
"TLR4 WILD-TYPE"   "TLR4 MUTATED" "TLR4 WILD-TYPE" "TLR4 WILD-TYPE" 
    TCGA-44-2656     TCGA-44-2657     TCGA-44-2659     TCGA-44-2661 
"TLR4 WILD-TYPE" "TLR4 WILD-TYPE" "TLR4 WILD-TYPE" "TLR4 WILD-TYPE" 
    TCGA-44-2662     TCGA-44-2665     TCGA-44-2666     TCGA-44-2668 
"TLR4 WILD-TYPE" "TLR4 WILD-TYPE" "TLR4 WILD-TYPE" "TLR4 WILD-TYPE" 
    TCGA-44-3396     TCGA-44-3398     TCGA-44-3918     TCGA-44-3919 
"TLR4 WILD-TYPE" "TLR4 WILD-TYPE" "TLR4 WILD-TYPE" "TLR4 WILD-TYPE" 
    TCGA-44-4112     TCGA-44-5643     TCGA-44-5645     TCGA-44-6144 
"TLR4 WILD-TYPE" "TLR4 WILD-TYPE" "TLR4 WILD-TYPE" "TLR4 WILD-TYPE" 
    TCGA-44-6145     TCGA-44-6146     TCGA-44-6147     TCGA-44-6148 
"TLR4 WILD-TYPE" "TLR4 WILD-TYPE"   "TLR4 MUTATED" "TLR4 WILD-TYPE" 
    TCGA-44-6774     TCGA-44-6775     TCGA-44-6776     TCGA-44-6777 
"TLR4 WILD-TYPE" "TLR4 WILD-TYPE" "TLR4 WILD-TYPE"   "TLR4 MUTATED" 
    TCGA-44-6778     TCGA-44-6779     TCGA-49-4486     TCGA-49-4487 
"TLR4 WILD-TYPE" "TLR4 WILD-TYPE" "TLR4 WILD-TYPE" "TLR4 WILD-TYPE" 
    TCGA-49-4488     TCGA-49-4490     TCGA-49-4494     TCGA-49-4501 
"TLR4 WILD-TYPE" "TLR4 WILD-TYPE" "TLR4 WILD-TYPE" "TLR4 WILD-TYPE" 
    TCGA-49-4505     TCGA-49-4506     TCGA-49-4507     TCGA-49-4510 
"TLR4 WILD-TYPE" "TLR4 WILD-TYPE" "TLR4 WILD-TYPE" "TLR4 WILD-TYPE" 
    TCGA-49-4512     TCGA-49-4514     TCGA-49-6742     TCGA-49-6743 
"TLR4 WILD-TYPE" "TLR4 WILD-TYPE"   "TLR4 MUTATED" "TLR4 WILD-TYPE" 
    TCGA-49-6744     TCGA-49-6745     TCGA-50-5044     TCGA-50-5045 
"TLR4 WILD-TYPE" "TLR4 WILD-TYPE" "TLR4 WILD-TYPE" "TLR4 WILD-TYPE" 
    TCGA-50-5049     TCGA-50-5051     TCGA-50-5055     TCGA-50-5066 
  "TLR4 MUTATED" "TLR4 WILD-TYPE" "TLR4 WILD-TYPE" "TLR4 WILD-TYPE" 
    TCGA-50-5068     TCGA-50-5072     TCGA-50-5930     TCGA-50-5931 
  "TLR4 MUTATED" "TLR4 WILD-TYPE" "TLR4 WILD-TYPE" "TLR4 WILD-TYPE" 
    TCGA-50-5932     TCGA-50-5933     TCGA-50-5935     TCGA-50-5936 
"TLR4 WILD-TYPE"   "TLR4 MUTATED" "TLR4 WILD-TYPE" "TLR4 WILD-TYPE" 
    TCGA-50-5939     TCGA-50-5941     TCGA-50-5942     TCGA-50-5944 
"TLR4 WILD-TYPE" "TLR4 WILD-TYPE" "TLR4 WILD-TYPE" "TLR4 WILD-TYPE" 
    TCGA-50-5946     TCGA-50-6590     TCGA-50-6591     TCGA-50-6592 
"TLR4 WILD-TYPE"   "TLR4 MUTATED" "TLR4 WILD-TYPE" "TLR4 WILD-TYPE" 
    TCGA-50-6593     TCGA-50-6594     TCGA-50-6595     TCGA-50-6597 
"TLR4 WILD-TYPE" "TLR4 WILD-TYPE"   "TLR4 MUTATED" "TLR4 WILD-TYPE" 
    TCGA-55-1592     TCGA-55-1594     TCGA-55-1595     TCGA-55-1596 
"TLR4 WILD-TYPE" "TLR4 WILD-TYPE" "TLR4 WILD-TYPE" "TLR4 WILD-TYPE" 
    TCGA-55-5899     TCGA-55-6543     TCGA-55-6642     TCGA-55-6712 
"TLR4 WILD-TYPE" "TLR4 WILD-TYPE" "TLR4 WILD-TYPE" "TLR4 WILD-TYPE" 
    TCGA-64-1676     TCGA-64-1677     TCGA-64-1678     TCGA-64-1680 
"TLR4 WILD-TYPE" "TLR4 WILD-TYPE" "TLR4 WILD-TYPE" "TLR4 WILD-TYPE" 
    TCGA-64-5774     TCGA-64-5775     TCGA-64-5778     TCGA-64-5779 
"TLR4 WILD-TYPE" "TLR4 WILD-TYPE" "TLR4 WILD-TYPE" "TLR4 WILD-TYPE" 
    TCGA-64-5781     TCGA-64-5815     TCGA-67-3770     TCGA-67-3771 
  "TLR4 MUTATED" "TLR4 WILD-TYPE" "TLR4 WILD-TYPE" "TLR4 WILD-TYPE" 
    TCGA-67-3772     TCGA-67-3773     TCGA-67-3774     TCGA-67-6215 
"TLR4 WILD-TYPE" "TLR4 WILD-TYPE" "TLR4 WILD-TYPE" "TLR4 WILD-TYPE" 
    TCGA-67-6216     TCGA-67-6217     TCGA-71-6725     TCGA-73-4658 
"TLR4 WILD-TYPE" "TLR4 WILD-TYPE" "TLR4 WILD-TYPE" "TLR4 WILD-TYPE" 
    TCGA-73-4659     TCGA-73-4662     TCGA-73-4666     TCGA-73-4668 
  "TLR4 MUTATED" "TLR4 WILD-TYPE" "TLR4 WILD-TYPE" "TLR4 WILD-TYPE" 
    TCGA-73-4670     TCGA-73-4675     TCGA-73-4676     TCGA-73-4677 
"TLR4 WILD-TYPE" "TLR4 WILD-TYPE" "TLR4 WILD-TYPE"   "TLR4 MUTATED" 
    TCGA-91-6828     TCGA-91-6829     TCGA-91-6831     TCGA-91-6835 
"TLR4 WILD-TYPE"   "TLR4 MUTATED" "TLR4 WILD-TYPE" "TLR4 WILD-TYPE" 
    TCGA-91-6836 
"TLR4 WILD-TYPE" 
[1] "hr=" "1.2"
D219V2, continuous
D219V3, binary
[1] "tbl2"
                cls
clus             [,1] [,2]
  TLR4 MUTATED     12   11
  TLR4 WILD-TYPE   81   68
        clus
vv       TLR4 MUTATED TLR4 WILD-TYPE
  FEMALE           12             81
  MALE             11             68
D219V4, continuous
[1] "Remove cluster labels:" "TLR4 MUTATED"          
clus
  TLR4 MUTATED TLR4 WILD-TYPE 
             1             11 
    TCGA-35-4122     TCGA-35-4123     TCGA-35-5375     TCGA-64-1677 
"TLR4 WILD-TYPE" "TLR4 WILD-TYPE" "TLR4 WILD-TYPE" "TLR4 WILD-TYPE" 
    TCGA-64-5778     TCGA-71-6725     TCGA-73-4662     TCGA-73-4666 
"TLR4 WILD-TYPE" "TLR4 WILD-TYPE" "TLR4 WILD-TYPE" "TLR4 WILD-TYPE" 
    TCGA-73-4668     TCGA-73-4676     TCGA-75-5122 
"TLR4 WILD-TYPE" "TLR4 WILD-TYPE" "TLR4 WILD-TYPE" 
D219V5, multiclass
D219V6, multiclass
    clus
vv   TLR4 MUTATED TLR4 WILD-TYPE
  T1            2             39
  T2           15             93
  T3            3             11
  T4            3              5
D219V7, multiclass
       clus
vv      TLR4 MUTATED TLR4 WILD-TYPE
  N0              10             85
  N1               7             30
  N2+N3            4             31
D219V8, multiclass
    clus
vv   TLR4 MUTATED TLR4 WILD-TYPE
  M0           17            120
  M1            1              8
  MX            5             17
D219V9, multiclass
     clus
vv    TLR4 MUTATED TLR4 WILD-TYPE
  I              9             79
  II             7             26
  III            6             33
  IV             1              8
D219V10, binary
[1] "tbl2"
                cls
clus             [,1] [,2]
  TLR4 MUTATED      3   20
  TLR4 WILD-TYPE   13  136
     clus
vv    TLR4 MUTATED TLR4 WILD-TYPE
  NO             3             13
  YES           20            136
D219V11, continuous
D219V12, continuous
D219V13, multiclass
                                             clus
vv                                            TLR4 MUTATED TLR4 WILD-TYPE
  CURRENT REFORMED SMOKER FOR < OR = 15 YEARS            9             53
  CURRENT REFORMED SMOKER FOR > 15 YEARS                 7             39
  CURRENT SMOKER                                         4             24
  LIFELONG NON-SMOKER                                    0             24
D219V14, continuous

Clustering(220) Variable = CDH11 MUTATION ANALYSIS
D220V1, survival
                 sevent
clus2              0  1
  CDH11 MUTATED    7  7
  CDH11 WILD-TYPE 92 43
  CDH11 MUTATED CDH11 WILD-TYPE 
             14             135 
  CDH11 MUTATED CDH11 WILD-TYPE 
              7              43 
$`CDH11 MUTATED`
TCGA-05-4250 TCGA-05-4382 TCGA-05-4396 TCGA-05-4432 TCGA-35-5375 TCGA-38-4626 
        3.98        19.92         9.96        25.02         8.68        85.32 
TCGA-38-4631 TCGA-49-4486 TCGA-49-6743 TCGA-50-5049 TCGA-50-5933 TCGA-50-6590 
       11.64        76.21        12.13        48.82        77.88        42.31 
TCGA-55-1592 TCGA-64-5781 
       23.05        39.52 

$`CDH11 WILD-TYPE`
TCGA-05-4249 TCGA-05-4384 TCGA-05-4390 TCGA-05-4397 TCGA-05-4398 TCGA-05-4402 
       38.07        14.01        37.02        24.03        47.05         8.02 
TCGA-05-4405 TCGA-05-4415 TCGA-05-4417 TCGA-05-4418 TCGA-05-4420 TCGA-05-4424 
       20.05         2.96        14.93         8.98        29.95        30.02 
TCGA-05-4426 TCGA-05-4427 TCGA-05-4430 TCGA-05-4433 TCGA-05-4434 TCGA-05-5420 
       26.01        26.01        25.02        24.00        15.02         1.02 
TCGA-05-5423 TCGA-05-5425 TCGA-05-5429 TCGA-05-5715 TCGA-35-3615 TCGA-35-4122 
        4.96         2.96         0.99         2.04         0.46         7.36 
TCGA-35-4123 TCGA-38-4625 TCGA-38-4627 TCGA-38-4628 TCGA-38-4629 TCGA-38-4630 
        5.95        47.61        37.71        49.02        28.37        35.28 
TCGA-38-4632 TCGA-38-6178 TCGA-44-2655 TCGA-44-2656 TCGA-44-2657 TCGA-44-2659 
       44.61         5.19        18.87        19.10        13.15        17.39 
TCGA-44-2661 TCGA-44-2662 TCGA-44-2665 TCGA-44-2666 TCGA-44-2668 TCGA-44-3396 
        3.39        15.78        13.15         3.19         8.09        10.22 
TCGA-44-3398 TCGA-44-3918 TCGA-44-3919 TCGA-44-4112 TCGA-44-5643 TCGA-44-5645 
        8.32         6.44         6.21         4.60         3.48         6.84 
TCGA-44-6144 TCGA-44-6145 TCGA-44-6146 TCGA-44-6147 TCGA-44-6148 TCGA-44-6774 
        0.30         3.35         9.93         7.76         3.12         5.42 
TCGA-44-6775 TCGA-44-6776 TCGA-44-6777 TCGA-44-6778 TCGA-44-6779 TCGA-49-4487 
        2.70        63.72        32.45        36.49        16.41        28.11 
TCGA-49-4488 TCGA-49-4490 TCGA-49-4494 TCGA-49-4501 TCGA-49-4505 TCGA-49-4506 
       28.57        12.66        35.54        46.72        14.07        32.84 
TCGA-49-4507 TCGA-49-4510 TCGA-49-4512 TCGA-49-4514 TCGA-49-6742 TCGA-49-6744 
        8.81        29.46        29.75        43.20        15.02        12.99 
TCGA-49-6745 TCGA-50-5044 TCGA-50-5045 TCGA-50-5051 TCGA-50-5055 TCGA-50-5066 
        4.93        20.48        71.47        14.96        25.81         9.76 
TCGA-50-5068 TCGA-50-5072 TCGA-50-5930 TCGA-50-5931 TCGA-50-5932 TCGA-50-5935 
       49.28         8.05         9.27         8.78        35.87        21.47 
TCGA-50-5936 TCGA-50-5939 TCGA-50-5941 TCGA-50-5942 TCGA-50-5944 TCGA-50-5946 
        8.45        15.12         9.37         4.44        12.26        11.47 
TCGA-50-6591 TCGA-50-6592 TCGA-50-6593 TCGA-50-6594 TCGA-50-6595 TCGA-50-6597 
        3.88        25.51        11.05        12.16         6.21        33.37 
TCGA-55-1594 TCGA-55-1595 TCGA-55-1596 TCGA-55-5899 TCGA-55-6543 TCGA-55-6642 
       38.73        48.62        45.17         2.86         0.07        32.61 
TCGA-55-6712 TCGA-64-1676 TCGA-64-1677 TCGA-64-1678 TCGA-64-1680 TCGA-64-5774 
        0.79        56.81        20.65        39.09        37.02        83.84 
TCGA-64-5775 TCGA-64-5778 TCGA-64-5779 TCGA-64-5815 TCGA-67-3770 TCGA-67-3771 
        0.10        30.44        16.67         7.33         0.99         1.97 
TCGA-67-3772 TCGA-67-3773 TCGA-67-3774 TCGA-67-6215 TCGA-67-6216 TCGA-67-6217 
        0.59         2.04         0.59         0.89         0.69        13.87 
TCGA-71-6725 TCGA-73-4658 TCGA-73-4659 TCGA-73-4662 TCGA-73-4666 TCGA-73-4668 
        2.01        52.57        23.38        29.95        20.28        15.35 
TCGA-73-4670 TCGA-73-4675 TCGA-73-4676 TCGA-73-4677 TCGA-91-6828 TCGA-91-6829 
        0.46         1.32         4.01         1.25         1.22        41.33 
TCGA-91-6831 TCGA-91-6835 TCGA-91-6836 
        1.28         1.15         0.36 

  CDH11 MUTATED CDH11 WILD-TYPE 
           3.98            0.07 
  CDH11 MUTATED CDH11 WILD-TYPE 
          85.32           83.84 
  CDH11 MUTATED CDH11 WILD-TYPE 
         24.035          13.150 
[1] "4.0 - 85.3 (24.0)" "0.1 - 83.8 (13.2)"
     TCGA-05-4249      TCGA-05-4250      TCGA-05-4382      TCGA-05-4384 
"CDH11 WILD-TYPE"   "CDH11 MUTATED"   "CDH11 MUTATED" "CDH11 WILD-TYPE" 
     TCGA-05-4390      TCGA-05-4396      TCGA-05-4397      TCGA-05-4398 
"CDH11 WILD-TYPE"   "CDH11 MUTATED" "CDH11 WILD-TYPE" "CDH11 WILD-TYPE" 
     TCGA-05-4402      TCGA-05-4405      TCGA-05-4415      TCGA-05-4417 
"CDH11 WILD-TYPE" "CDH11 WILD-TYPE" "CDH11 WILD-TYPE" "CDH11 WILD-TYPE" 
     TCGA-05-4418      TCGA-05-4420      TCGA-05-4424      TCGA-05-4426 
"CDH11 WILD-TYPE" "CDH11 WILD-TYPE" "CDH11 WILD-TYPE" "CDH11 WILD-TYPE" 
     TCGA-05-4427      TCGA-05-4430      TCGA-05-4432      TCGA-05-4433 
"CDH11 WILD-TYPE" "CDH11 WILD-TYPE"   "CDH11 MUTATED" "CDH11 WILD-TYPE" 
     TCGA-05-4434      TCGA-05-5420      TCGA-05-5423      TCGA-05-5425 
"CDH11 WILD-TYPE" "CDH11 WILD-TYPE" "CDH11 WILD-TYPE" "CDH11 WILD-TYPE" 
     TCGA-05-5429      TCGA-05-5715      TCGA-35-3615      TCGA-35-4122 
"CDH11 WILD-TYPE" "CDH11 WILD-TYPE" "CDH11 WILD-TYPE" "CDH11 WILD-TYPE" 
     TCGA-35-4123      TCGA-35-5375      TCGA-38-4625      TCGA-38-4626 
"CDH11 WILD-TYPE"   "CDH11 MUTATED" "CDH11 WILD-TYPE"   "CDH11 MUTATED" 
     TCGA-38-4627      TCGA-38-4628      TCGA-38-4629      TCGA-38-4630 
"CDH11 WILD-TYPE" "CDH11 WILD-TYPE" "CDH11 WILD-TYPE" "CDH11 WILD-TYPE" 
     TCGA-38-4631      TCGA-38-4632      TCGA-38-6178      TCGA-44-2655 
  "CDH11 MUTATED" "CDH11 WILD-TYPE" "CDH11 WILD-TYPE" "CDH11 WILD-TYPE" 
     TCGA-44-2656      TCGA-44-2657      TCGA-44-2659      TCGA-44-2661 
"CDH11 WILD-TYPE" "CDH11 WILD-TYPE" "CDH11 WILD-TYPE" "CDH11 WILD-TYPE" 
     TCGA-44-2662      TCGA-44-2665      TCGA-44-2666      TCGA-44-2668 
"CDH11 WILD-TYPE" "CDH11 WILD-TYPE" "CDH11 WILD-TYPE" "CDH11 WILD-TYPE" 
     TCGA-44-3396      TCGA-44-3398      TCGA-44-3918      TCGA-44-3919 
"CDH11 WILD-TYPE" "CDH11 WILD-TYPE" "CDH11 WILD-TYPE" "CDH11 WILD-TYPE" 
     TCGA-44-4112      TCGA-44-5643      TCGA-44-5645      TCGA-44-6144 
"CDH11 WILD-TYPE" "CDH11 WILD-TYPE" "CDH11 WILD-TYPE" "CDH11 WILD-TYPE" 
     TCGA-44-6145      TCGA-44-6146      TCGA-44-6147      TCGA-44-6148 
"CDH11 WILD-TYPE" "CDH11 WILD-TYPE" "CDH11 WILD-TYPE" "CDH11 WILD-TYPE" 
     TCGA-44-6774      TCGA-44-6775      TCGA-44-6776      TCGA-44-6777 
"CDH11 WILD-TYPE" "CDH11 WILD-TYPE" "CDH11 WILD-TYPE" "CDH11 WILD-TYPE" 
     TCGA-44-6778      TCGA-44-6779      TCGA-49-4486      TCGA-49-4487 
"CDH11 WILD-TYPE" "CDH11 WILD-TYPE"   "CDH11 MUTATED" "CDH11 WILD-TYPE" 
     TCGA-49-4488      TCGA-49-4490      TCGA-49-4494      TCGA-49-4501 
"CDH11 WILD-TYPE" "CDH11 WILD-TYPE" "CDH11 WILD-TYPE" "CDH11 WILD-TYPE" 
     TCGA-49-4505      TCGA-49-4506      TCGA-49-4507      TCGA-49-4510 
"CDH11 WILD-TYPE" "CDH11 WILD-TYPE" "CDH11 WILD-TYPE" "CDH11 WILD-TYPE" 
     TCGA-49-4512      TCGA-49-4514      TCGA-49-6742      TCGA-49-6743 
"CDH11 WILD-TYPE" "CDH11 WILD-TYPE" "CDH11 WILD-TYPE"   "CDH11 MUTATED" 
     TCGA-49-6744      TCGA-49-6745      TCGA-50-5044      TCGA-50-5045 
"CDH11 WILD-TYPE" "CDH11 WILD-TYPE" "CDH11 WILD-TYPE" "CDH11 WILD-TYPE" 
     TCGA-50-5049      TCGA-50-5051      TCGA-50-5055      TCGA-50-5066 
  "CDH11 MUTATED" "CDH11 WILD-TYPE" "CDH11 WILD-TYPE" "CDH11 WILD-TYPE" 
     TCGA-50-5068      TCGA-50-5072      TCGA-50-5930      TCGA-50-5931 
"CDH11 WILD-TYPE" "CDH11 WILD-TYPE" "CDH11 WILD-TYPE" "CDH11 WILD-TYPE" 
     TCGA-50-5932      TCGA-50-5933      TCGA-50-5935      TCGA-50-5936 
"CDH11 WILD-TYPE"   "CDH11 MUTATED" "CDH11 WILD-TYPE" "CDH11 WILD-TYPE" 
     TCGA-50-5939      TCGA-50-5941      TCGA-50-5942      TCGA-50-5944 
"CDH11 WILD-TYPE" "CDH11 WILD-TYPE" "CDH11 WILD-TYPE" "CDH11 WILD-TYPE" 
     TCGA-50-5946      TCGA-50-6590      TCGA-50-6591      TCGA-50-6592 
"CDH11 WILD-TYPE"   "CDH11 MUTATED" "CDH11 WILD-TYPE" "CDH11 WILD-TYPE" 
     TCGA-50-6593      TCGA-50-6594      TCGA-50-6595      TCGA-50-6597 
"CDH11 WILD-TYPE" "CDH11 WILD-TYPE" "CDH11 WILD-TYPE" "CDH11 WILD-TYPE" 
     TCGA-55-1592      TCGA-55-1594      TCGA-55-1595      TCGA-55-1596 
  "CDH11 MUTATED" "CDH11 WILD-TYPE" "CDH11 WILD-TYPE" "CDH11 WILD-TYPE" 
     TCGA-55-5899      TCGA-55-6543      TCGA-55-6642      TCGA-55-6712 
"CDH11 WILD-TYPE" "CDH11 WILD-TYPE" "CDH11 WILD-TYPE" "CDH11 WILD-TYPE" 
     TCGA-64-1676      TCGA-64-1677      TCGA-64-1678      TCGA-64-1680 
"CDH11 WILD-TYPE" "CDH11 WILD-TYPE" "CDH11 WILD-TYPE" "CDH11 WILD-TYPE" 
     TCGA-64-5774      TCGA-64-5775      TCGA-64-5778      TCGA-64-5779 
"CDH11 WILD-TYPE" "CDH11 WILD-TYPE" "CDH11 WILD-TYPE" "CDH11 WILD-TYPE" 
     TCGA-64-5781      TCGA-64-5815      TCGA-67-3770      TCGA-67-3771 
  "CDH11 MUTATED" "CDH11 WILD-TYPE" "CDH11 WILD-TYPE" "CDH11 WILD-TYPE" 
     TCGA-67-3772      TCGA-67-3773      TCGA-67-3774      TCGA-67-6215 
"CDH11 WILD-TYPE" "CDH11 WILD-TYPE" "CDH11 WILD-TYPE" "CDH11 WILD-TYPE" 
     TCGA-67-6216      TCGA-67-6217      TCGA-71-6725      TCGA-73-4658 
"CDH11 WILD-TYPE" "CDH11 WILD-TYPE" "CDH11 WILD-TYPE" "CDH11 WILD-TYPE" 
     TCGA-73-4659      TCGA-73-4662      TCGA-73-4666      TCGA-73-4668 
"CDH11 WILD-TYPE" "CDH11 WILD-TYPE" "CDH11 WILD-TYPE" "CDH11 WILD-TYPE" 
     TCGA-73-4670      TCGA-73-4675      TCGA-73-4676      TCGA-73-4677 
"CDH11 WILD-TYPE" "CDH11 WILD-TYPE" "CDH11 WILD-TYPE" "CDH11 WILD-TYPE" 
     TCGA-91-6828      TCGA-91-6829      TCGA-91-6831      TCGA-91-6835 
"CDH11 WILD-TYPE" "CDH11 WILD-TYPE" "CDH11 WILD-TYPE" "CDH11 WILD-TYPE" 
     TCGA-91-6836 
"CDH11 WILD-TYPE" 
     TCGA-05-4249      TCGA-05-4250      TCGA-05-4382      TCGA-05-4384 
"CDH11 WILD-TYPE"   "CDH11 MUTATED"   "CDH11 MUTATED" "CDH11 WILD-TYPE" 
     TCGA-05-4390      TCGA-05-4396      TCGA-05-4397      TCGA-05-4398 
"CDH11 WILD-TYPE"   "CDH11 MUTATED" "CDH11 WILD-TYPE" "CDH11 WILD-TYPE" 
     TCGA-05-4402      TCGA-05-4405      TCGA-05-4415      TCGA-05-4417 
"CDH11 WILD-TYPE" "CDH11 WILD-TYPE" "CDH11 WILD-TYPE" "CDH11 WILD-TYPE" 
     TCGA-05-4418      TCGA-05-4420      TCGA-05-4424      TCGA-05-4426 
"CDH11 WILD-TYPE" "CDH11 WILD-TYPE" "CDH11 WILD-TYPE" "CDH11 WILD-TYPE" 
     TCGA-05-4427      TCGA-05-4430      TCGA-05-4432      TCGA-05-4433 
"CDH11 WILD-TYPE" "CDH11 WILD-TYPE"   "CDH11 MUTATED" "CDH11 WILD-TYPE" 
     TCGA-05-4434      TCGA-05-5420      TCGA-05-5423      TCGA-05-5425 
"CDH11 WILD-TYPE" "CDH11 WILD-TYPE" "CDH11 WILD-TYPE" "CDH11 WILD-TYPE" 
     TCGA-05-5429      TCGA-05-5715      TCGA-35-3615      TCGA-35-4122 
"CDH11 WILD-TYPE" "CDH11 WILD-TYPE" "CDH11 WILD-TYPE" "CDH11 WILD-TYPE" 
     TCGA-35-4123      TCGA-35-5375      TCGA-38-4625      TCGA-38-4626 
"CDH11 WILD-TYPE"   "CDH11 MUTATED" "CDH11 WILD-TYPE"   "CDH11 MUTATED" 
     TCGA-38-4627      TCGA-38-4628      TCGA-38-4629      TCGA-38-4630 
"CDH11 WILD-TYPE" "CDH11 WILD-TYPE" "CDH11 WILD-TYPE" "CDH11 WILD-TYPE" 
     TCGA-38-4631      TCGA-38-4632      TCGA-38-6178      TCGA-44-2655 
  "CDH11 MUTATED" "CDH11 WILD-TYPE" "CDH11 WILD-TYPE" "CDH11 WILD-TYPE" 
     TCGA-44-2656      TCGA-44-2657      TCGA-44-2659      TCGA-44-2661 
"CDH11 WILD-TYPE" "CDH11 WILD-TYPE" "CDH11 WILD-TYPE" "CDH11 WILD-TYPE" 
     TCGA-44-2662      TCGA-44-2665      TCGA-44-2666      TCGA-44-2668 
"CDH11 WILD-TYPE" "CDH11 WILD-TYPE" "CDH11 WILD-TYPE" "CDH11 WILD-TYPE" 
     TCGA-44-3396      TCGA-44-3398      TCGA-44-3918      TCGA-44-3919 
"CDH11 WILD-TYPE" "CDH11 WILD-TYPE" "CDH11 WILD-TYPE" "CDH11 WILD-TYPE" 
     TCGA-44-4112      TCGA-44-5643      TCGA-44-5645      TCGA-44-6144 
"CDH11 WILD-TYPE" "CDH11 WILD-TYPE" "CDH11 WILD-TYPE" "CDH11 WILD-TYPE" 
     TCGA-44-6145      TCGA-44-6146      TCGA-44-6147      TCGA-44-6148 
"CDH11 WILD-TYPE" "CDH11 WILD-TYPE" "CDH11 WILD-TYPE" "CDH11 WILD-TYPE" 
     TCGA-44-6774      TCGA-44-6775      TCGA-44-6776      TCGA-44-6777 
"CDH11 WILD-TYPE" "CDH11 WILD-TYPE" "CDH11 WILD-TYPE" "CDH11 WILD-TYPE" 
     TCGA-44-6778      TCGA-44-6779      TCGA-49-4486      TCGA-49-4487 
"CDH11 WILD-TYPE" "CDH11 WILD-TYPE"   "CDH11 MUTATED" "CDH11 WILD-TYPE" 
     TCGA-49-4488      TCGA-49-4490      TCGA-49-4494      TCGA-49-4501 
"CDH11 WILD-TYPE" "CDH11 WILD-TYPE" "CDH11 WILD-TYPE" "CDH11 WILD-TYPE" 
     TCGA-49-4505      TCGA-49-4506      TCGA-49-4507      TCGA-49-4510 
"CDH11 WILD-TYPE" "CDH11 WILD-TYPE" "CDH11 WILD-TYPE" "CDH11 WILD-TYPE" 
     TCGA-49-4512      TCGA-49-4514      TCGA-49-6742      TCGA-49-6743 
"CDH11 WILD-TYPE" "CDH11 WILD-TYPE" "CDH11 WILD-TYPE"   "CDH11 MUTATED" 
     TCGA-49-6744      TCGA-49-6745      TCGA-50-5044      TCGA-50-5045 
"CDH11 WILD-TYPE" "CDH11 WILD-TYPE" "CDH11 WILD-TYPE" "CDH11 WILD-TYPE" 
     TCGA-50-5049      TCGA-50-5051      TCGA-50-5055      TCGA-50-5066 
  "CDH11 MUTATED" "CDH11 WILD-TYPE" "CDH11 WILD-TYPE" "CDH11 WILD-TYPE" 
     TCGA-50-5068      TCGA-50-5072      TCGA-50-5930      TCGA-50-5931 
"CDH11 WILD-TYPE" "CDH11 WILD-TYPE" "CDH11 WILD-TYPE" "CDH11 WILD-TYPE" 
     TCGA-50-5932      TCGA-50-5933      TCGA-50-5935      TCGA-50-5936 
"CDH11 WILD-TYPE"   "CDH11 MUTATED" "CDH11 WILD-TYPE" "CDH11 WILD-TYPE" 
     TCGA-50-5939      TCGA-50-5941      TCGA-50-5942      TCGA-50-5944 
"CDH11 WILD-TYPE" "CDH11 WILD-TYPE" "CDH11 WILD-TYPE" "CDH11 WILD-TYPE" 
     TCGA-50-5946      TCGA-50-6590      TCGA-50-6591      TCGA-50-6592 
"CDH11 WILD-TYPE"   "CDH11 MUTATED" "CDH11 WILD-TYPE" "CDH11 WILD-TYPE" 
     TCGA-50-6593      TCGA-50-6594      TCGA-50-6595      TCGA-50-6597 
"CDH11 WILD-TYPE" "CDH11 WILD-TYPE" "CDH11 WILD-TYPE" "CDH11 WILD-TYPE" 
     TCGA-55-1592      TCGA-55-1594      TCGA-55-1595      TCGA-55-1596 
  "CDH11 MUTATED" "CDH11 WILD-TYPE" "CDH11 WILD-TYPE" "CDH11 WILD-TYPE" 
     TCGA-55-5899      TCGA-55-6543      TCGA-55-6642      TCGA-55-6712 
"CDH11 WILD-TYPE" "CDH11 WILD-TYPE" "CDH11 WILD-TYPE" "CDH11 WILD-TYPE" 
     TCGA-64-1676      TCGA-64-1677      TCGA-64-1678      TCGA-64-1680 
"CDH11 WILD-TYPE" "CDH11 WILD-TYPE" "CDH11 WILD-TYPE" "CDH11 WILD-TYPE" 
     TCGA-64-5774      TCGA-64-5775      TCGA-64-5778      TCGA-64-5779 
"CDH11 WILD-TYPE" "CDH11 WILD-TYPE" "CDH11 WILD-TYPE" "CDH11 WILD-TYPE" 
     TCGA-64-5781      TCGA-64-5815      TCGA-67-3770      TCGA-67-3771 
  "CDH11 MUTATED" "CDH11 WILD-TYPE" "CDH11 WILD-TYPE" "CDH11 WILD-TYPE" 
     TCGA-67-3772      TCGA-67-3773      TCGA-67-3774      TCGA-67-6215 
"CDH11 WILD-TYPE" "CDH11 WILD-TYPE" "CDH11 WILD-TYPE" "CDH11 WILD-TYPE" 
     TCGA-67-6216      TCGA-67-6217      TCGA-71-6725      TCGA-73-4658 
"CDH11 WILD-TYPE" "CDH11 WILD-TYPE" "CDH11 WILD-TYPE" "CDH11 WILD-TYPE" 
     TCGA-73-4659      TCGA-73-4662      TCGA-73-4666      TCGA-73-4668 
"CDH11 WILD-TYPE" "CDH11 WILD-TYPE" "CDH11 WILD-TYPE" "CDH11 WILD-TYPE" 
     TCGA-73-4670      TCGA-73-4675      TCGA-73-4676      TCGA-73-4677 
"CDH11 WILD-TYPE" "CDH11 WILD-TYPE" "CDH11 WILD-TYPE" "CDH11 WILD-TYPE" 
     TCGA-91-6828      TCGA-91-6829      TCGA-91-6831      TCGA-91-6835 
"CDH11 WILD-TYPE" "CDH11 WILD-TYPE" "CDH11 WILD-TYPE" "CDH11 WILD-TYPE" 
     TCGA-91-6836 
"CDH11 WILD-TYPE" 
     TCGA-05-4249      TCGA-05-4250      TCGA-05-4382      TCGA-05-4384 
"CDH11 WILD-TYPE"   "CDH11 MUTATED"   "CDH11 MUTATED" "CDH11 WILD-TYPE" 
     TCGA-05-4390      TCGA-05-4396      TCGA-05-4397      TCGA-05-4398 
"CDH11 WILD-TYPE"   "CDH11 MUTATED" "CDH11 WILD-TYPE" "CDH11 WILD-TYPE" 
     TCGA-05-4402      TCGA-05-4405      TCGA-05-4415      TCGA-05-4417 
"CDH11 WILD-TYPE" "CDH11 WILD-TYPE" "CDH11 WILD-TYPE" "CDH11 WILD-TYPE" 
     TCGA-05-4418      TCGA-05-4420      TCGA-05-4424      TCGA-05-4426 
"CDH11 WILD-TYPE" "CDH11 WILD-TYPE" "CDH11 WILD-TYPE" "CDH11 WILD-TYPE" 
     TCGA-05-4427      TCGA-05-4430      TCGA-05-4432      TCGA-05-4433 
"CDH11 WILD-TYPE" "CDH11 WILD-TYPE"   "CDH11 MUTATED" "CDH11 WILD-TYPE" 
     TCGA-05-4434      TCGA-05-5420      TCGA-05-5423      TCGA-05-5425 
"CDH11 WILD-TYPE" "CDH11 WILD-TYPE" "CDH11 WILD-TYPE" "CDH11 WILD-TYPE" 
     TCGA-05-5429      TCGA-05-5715      TCGA-35-3615      TCGA-35-4122 
"CDH11 WILD-TYPE" "CDH11 WILD-TYPE" "CDH11 WILD-TYPE" "CDH11 WILD-TYPE" 
     TCGA-35-4123      TCGA-35-5375      TCGA-38-4625      TCGA-38-4626 
"CDH11 WILD-TYPE"   "CDH11 MUTATED" "CDH11 WILD-TYPE"   "CDH11 MUTATED" 
     TCGA-38-4627      TCGA-38-4628      TCGA-38-4629      TCGA-38-4630 
"CDH11 WILD-TYPE" "CDH11 WILD-TYPE" "CDH11 WILD-TYPE" "CDH11 WILD-TYPE" 
     TCGA-38-4631      TCGA-38-4632      TCGA-38-6178      TCGA-44-2655 
  "CDH11 MUTATED" "CDH11 WILD-TYPE" "CDH11 WILD-TYPE" "CDH11 WILD-TYPE" 
     TCGA-44-2656      TCGA-44-2657      TCGA-44-2659      TCGA-44-2661 
"CDH11 WILD-TYPE" "CDH11 WILD-TYPE" "CDH11 WILD-TYPE" "CDH11 WILD-TYPE" 
     TCGA-44-2662      TCGA-44-2665      TCGA-44-2666      TCGA-44-2668 
"CDH11 WILD-TYPE" "CDH11 WILD-TYPE" "CDH11 WILD-TYPE" "CDH11 WILD-TYPE" 
     TCGA-44-3396      TCGA-44-3398      TCGA-44-3918      TCGA-44-3919 
"CDH11 WILD-TYPE" "CDH11 WILD-TYPE" "CDH11 WILD-TYPE" "CDH11 WILD-TYPE" 
     TCGA-44-4112      TCGA-44-5643      TCGA-44-5645      TCGA-44-6144 
"CDH11 WILD-TYPE" "CDH11 WILD-TYPE" "CDH11 WILD-TYPE" "CDH11 WILD-TYPE" 
     TCGA-44-6145      TCGA-44-6146      TCGA-44-6147      TCGA-44-6148 
"CDH11 WILD-TYPE" "CDH11 WILD-TYPE" "CDH11 WILD-TYPE" "CDH11 WILD-TYPE" 
     TCGA-44-6774      TCGA-44-6775      TCGA-44-6776      TCGA-44-6777 
"CDH11 WILD-TYPE" "CDH11 WILD-TYPE" "CDH11 WILD-TYPE" "CDH11 WILD-TYPE" 
     TCGA-44-6778      TCGA-44-6779      TCGA-49-4486      TCGA-49-4487 
"CDH11 WILD-TYPE" "CDH11 WILD-TYPE"   "CDH11 MUTATED" "CDH11 WILD-TYPE" 
     TCGA-49-4488      TCGA-49-4490      TCGA-49-4494      TCGA-49-4501 
"CDH11 WILD-TYPE" "CDH11 WILD-TYPE" "CDH11 WILD-TYPE" "CDH11 WILD-TYPE" 
     TCGA-49-4505      TCGA-49-4506      TCGA-49-4507      TCGA-49-4510 
"CDH11 WILD-TYPE" "CDH11 WILD-TYPE" "CDH11 WILD-TYPE" "CDH11 WILD-TYPE" 
     TCGA-49-4512      TCGA-49-4514      TCGA-49-6742      TCGA-49-6743 
"CDH11 WILD-TYPE" "CDH11 WILD-TYPE" "CDH11 WILD-TYPE"   "CDH11 MUTATED" 
     TCGA-49-6744      TCGA-49-6745      TCGA-50-5044      TCGA-50-5045 
"CDH11 WILD-TYPE" "CDH11 WILD-TYPE" "CDH11 WILD-TYPE" "CDH11 WILD-TYPE" 
     TCGA-50-5049      TCGA-50-5051      TCGA-50-5055      TCGA-50-5066 
  "CDH11 MUTATED" "CDH11 WILD-TYPE" "CDH11 WILD-TYPE" "CDH11 WILD-TYPE" 
     TCGA-50-5068      TCGA-50-5072      TCGA-50-5930      TCGA-50-5931 
"CDH11 WILD-TYPE" "CDH11 WILD-TYPE" "CDH11 WILD-TYPE" "CDH11 WILD-TYPE" 
     TCGA-50-5932      TCGA-50-5933      TCGA-50-5935      TCGA-50-5936 
"CDH11 WILD-TYPE"   "CDH11 MUTATED" "CDH11 WILD-TYPE" "CDH11 WILD-TYPE" 
     TCGA-50-5939      TCGA-50-5941      TCGA-50-5942      TCGA-50-5944 
"CDH11 WILD-TYPE" "CDH11 WILD-TYPE" "CDH11 WILD-TYPE" "CDH11 WILD-TYPE" 
     TCGA-50-5946      TCGA-50-6590      TCGA-50-6591      TCGA-50-6592 
"CDH11 WILD-TYPE"   "CDH11 MUTATED" "CDH11 WILD-TYPE" "CDH11 WILD-TYPE" 
     TCGA-50-6593      TCGA-50-6594      TCGA-50-6595      TCGA-50-6597 
"CDH11 WILD-TYPE" "CDH11 WILD-TYPE" "CDH11 WILD-TYPE" "CDH11 WILD-TYPE" 
     TCGA-55-1592      TCGA-55-1594      TCGA-55-1595      TCGA-55-1596 
  "CDH11 MUTATED" "CDH11 WILD-TYPE" "CDH11 WILD-TYPE" "CDH11 WILD-TYPE" 
     TCGA-55-5899      TCGA-55-6543      TCGA-55-6642      TCGA-55-6712 
"CDH11 WILD-TYPE" "CDH11 WILD-TYPE" "CDH11 WILD-TYPE" "CDH11 WILD-TYPE" 
     TCGA-64-1676      TCGA-64-1677      TCGA-64-1678      TCGA-64-1680 
"CDH11 WILD-TYPE" "CDH11 WILD-TYPE" "CDH11 WILD-TYPE" "CDH11 WILD-TYPE" 
     TCGA-64-5774      TCGA-64-5775      TCGA-64-5778      TCGA-64-5779 
"CDH11 WILD-TYPE" "CDH11 WILD-TYPE" "CDH11 WILD-TYPE" "CDH11 WILD-TYPE" 
     TCGA-64-5781      TCGA-64-5815      TCGA-67-3770      TCGA-67-3771 
  "CDH11 MUTATED" "CDH11 WILD-TYPE" "CDH11 WILD-TYPE" "CDH11 WILD-TYPE" 
     TCGA-67-3772      TCGA-67-3773      TCGA-67-3774      TCGA-67-6215 
"CDH11 WILD-TYPE" "CDH11 WILD-TYPE" "CDH11 WILD-TYPE" "CDH11 WILD-TYPE" 
     TCGA-67-6216      TCGA-67-6217      TCGA-71-6725      TCGA-73-4658 
"CDH11 WILD-TYPE" "CDH11 WILD-TYPE" "CDH11 WILD-TYPE" "CDH11 WILD-TYPE" 
     TCGA-73-4659      TCGA-73-4662      TCGA-73-4666      TCGA-73-4668 
"CDH11 WILD-TYPE" "CDH11 WILD-TYPE" "CDH11 WILD-TYPE" "CDH11 WILD-TYPE" 
     TCGA-73-4670      TCGA-73-4675      TCGA-73-4676      TCGA-73-4677 
"CDH11 WILD-TYPE" "CDH11 WILD-TYPE" "CDH11 WILD-TYPE" "CDH11 WILD-TYPE" 
     TCGA-91-6828      TCGA-91-6829      TCGA-91-6831      TCGA-91-6835 
"CDH11 WILD-TYPE" "CDH11 WILD-TYPE" "CDH11 WILD-TYPE" "CDH11 WILD-TYPE" 
     TCGA-91-6836 
"CDH11 WILD-TYPE" 
[1] "hr=" "1.5"
D220V2, continuous
D220V3, binary
[1] "tbl2"
                 cls
clus              [,1] [,2]
  CDH11 MUTATED      6    9
  CDH11 WILD-TYPE   87   70
        clus
vv       CDH11 MUTATED CDH11 WILD-TYPE
  FEMALE             6              87
  MALE               9              70
D220V4, continuous
[1] "Remove cluster labels:" "CDH11 MUTATED"         
clus
  CDH11 MUTATED CDH11 WILD-TYPE 
              1              11 
     TCGA-35-4122      TCGA-35-4123      TCGA-64-1677      TCGA-64-5778 
"CDH11 WILD-TYPE" "CDH11 WILD-TYPE" "CDH11 WILD-TYPE" "CDH11 WILD-TYPE" 
     TCGA-71-6725      TCGA-73-4659      TCGA-73-4662      TCGA-73-4666 
"CDH11 WILD-TYPE" "CDH11 WILD-TYPE" "CDH11 WILD-TYPE" "CDH11 WILD-TYPE" 
     TCGA-73-4668      TCGA-73-4676      TCGA-75-5122 
"CDH11 WILD-TYPE" "CDH11 WILD-TYPE" "CDH11 WILD-TYPE" 
D220V5, multiclass
D220V6, multiclass
    clus
vv   CDH11 MUTATED CDH11 WILD-TYPE
  T1             2              39
  T2            10              98
  T3             1              13
  T4             2               6
D220V7, multiclass
       clus
vv      CDH11 MUTATED CDH11 WILD-TYPE
  N0                9              86
  N1                3              34
  N2+N3             3              32
D220V8, multiclass
    clus
vv   CDH11 MUTATED CDH11 WILD-TYPE
  M0            14             123
  M1             0               9
  MX             1              21
D220V9, multiclass
     clus
vv    CDH11 MUTATED CDH11 WILD-TYPE
  I               8              80
  II              2              31
  III             5              34
  IV              0               9
D220V10, binary
[1] "tbl2"
                 cls
clus              [,1] [,2]
  CDH11 MUTATED      2   13
  CDH11 WILD-TYPE   14  143
     clus
vv    CDH11 MUTATED CDH11 WILD-TYPE
  NO              2              14
  YES            13             143
D220V11, continuous
D220V12, continuous
D220V13, multiclass
                                             clus
vv                                            CDH11 MUTATED CDH11 WILD-TYPE
  CURRENT REFORMED SMOKER FOR < OR = 15 YEARS             9              53
  CURRENT REFORMED SMOKER FOR > 15 YEARS                  2              44
  CURRENT SMOKER                                          2              26
  LIFELONG NON-SMOKER                                     0              24
D220V14, continuous

Clustering(221) Variable = EYA4 MUTATION ANALYSIS
D221V1, survival
                sevent
clus2             0  1
  EYA4 MUTATED    3  5
  EYA4 WILD-TYPE 96 45
  EYA4 MUTATED EYA4 WILD-TYPE 
             8            141 
  EYA4 MUTATED EYA4 WILD-TYPE 
             5             45 
$`EYA4 MUTATED`
TCGA-05-4396 TCGA-05-4398 TCGA-38-4632 TCGA-49-4488 TCGA-49-6743 TCGA-50-5051 
        9.96        47.05        44.61        28.57        12.13        14.96 
TCGA-50-5931 TCGA-50-5933 
        8.78        77.88 

$`EYA4 WILD-TYPE`
TCGA-05-4249 TCGA-05-4250 TCGA-05-4382 TCGA-05-4384 TCGA-05-4390 TCGA-05-4397 
       38.07         3.98        19.92        14.01        37.02        24.03 
TCGA-05-4402 TCGA-05-4405 TCGA-05-4415 TCGA-05-4417 TCGA-05-4418 TCGA-05-4420 
        8.02        20.05         2.96        14.93         8.98        29.95 
TCGA-05-4424 TCGA-05-4426 TCGA-05-4427 TCGA-05-4430 TCGA-05-4432 TCGA-05-4433 
       30.02        26.01        26.01        25.02        25.02        24.00 
TCGA-05-4434 TCGA-05-5420 TCGA-05-5423 TCGA-05-5425 TCGA-05-5429 TCGA-05-5715 
       15.02         1.02         4.96         2.96         0.99         2.04 
TCGA-35-3615 TCGA-35-4122 TCGA-35-4123 TCGA-35-5375 TCGA-38-4625 TCGA-38-4626 
        0.46         7.36         5.95         8.68        47.61        85.32 
TCGA-38-4627 TCGA-38-4628 TCGA-38-4629 TCGA-38-4630 TCGA-38-4631 TCGA-38-6178 
       37.71        49.02        28.37        35.28        11.64         5.19 
TCGA-44-2655 TCGA-44-2656 TCGA-44-2657 TCGA-44-2659 TCGA-44-2661 TCGA-44-2662 
       18.87        19.10        13.15        17.39         3.39        15.78 
TCGA-44-2665 TCGA-44-2666 TCGA-44-2668 TCGA-44-3396 TCGA-44-3398 TCGA-44-3918 
       13.15         3.19         8.09        10.22         8.32         6.44 
TCGA-44-3919 TCGA-44-4112 TCGA-44-5643 TCGA-44-5645 TCGA-44-6144 TCGA-44-6145 
        6.21         4.60         3.48         6.84         0.30         3.35 
TCGA-44-6146 TCGA-44-6147 TCGA-44-6148 TCGA-44-6774 TCGA-44-6775 TCGA-44-6776 
        9.93         7.76         3.12         5.42         2.70        63.72 
TCGA-44-6777 TCGA-44-6778 TCGA-44-6779 TCGA-49-4486 TCGA-49-4487 TCGA-49-4490 
       32.45        36.49        16.41        76.21        28.11        12.66 
TCGA-49-4494 TCGA-49-4501 TCGA-49-4505 TCGA-49-4506 TCGA-49-4507 TCGA-49-4510 
       35.54        46.72        14.07        32.84         8.81        29.46 
TCGA-49-4512 TCGA-49-4514 TCGA-49-6742 TCGA-49-6744 TCGA-49-6745 TCGA-50-5044 
       29.75        43.20        15.02        12.99         4.93        20.48 
TCGA-50-5045 TCGA-50-5049 TCGA-50-5055 TCGA-50-5066 TCGA-50-5068 TCGA-50-5072 
       71.47        48.82        25.81         9.76        49.28         8.05 
TCGA-50-5930 TCGA-50-5932 TCGA-50-5935 TCGA-50-5936 TCGA-50-5939 TCGA-50-5941 
        9.27        35.87        21.47         8.45        15.12         9.37 
TCGA-50-5942 TCGA-50-5944 TCGA-50-5946 TCGA-50-6590 TCGA-50-6591 TCGA-50-6592 
        4.44        12.26        11.47        42.31         3.88        25.51 
TCGA-50-6593 TCGA-50-6594 TCGA-50-6595 TCGA-50-6597 TCGA-55-1592 TCGA-55-1594 
       11.05        12.16         6.21        33.37        23.05        38.73 
TCGA-55-1595 TCGA-55-1596 TCGA-55-5899 TCGA-55-6543 TCGA-55-6642 TCGA-55-6712 
       48.62        45.17         2.86         0.07        32.61         0.79 
TCGA-64-1676 TCGA-64-1677 TCGA-64-1678 TCGA-64-1680 TCGA-64-5774 TCGA-64-5775 
       56.81        20.65        39.09        37.02        83.84         0.10 
TCGA-64-5778 TCGA-64-5779 TCGA-64-5781 TCGA-64-5815 TCGA-67-3770 TCGA-67-3771 
       30.44        16.67        39.52         7.33         0.99         1.97 
TCGA-67-3772 TCGA-67-3773 TCGA-67-3774 TCGA-67-6215 TCGA-67-6216 TCGA-67-6217 
        0.59         2.04         0.59         0.89         0.69        13.87 
TCGA-71-6725 TCGA-73-4658 TCGA-73-4659 TCGA-73-4662 TCGA-73-4666 TCGA-73-4668 
        2.01        52.57        23.38        29.95        20.28        15.35 
TCGA-73-4670 TCGA-73-4675 TCGA-73-4676 TCGA-73-4677 TCGA-91-6828 TCGA-91-6829 
        0.46         1.32         4.01         1.25         1.22        41.33 
TCGA-91-6831 TCGA-91-6835 TCGA-91-6836 
        1.28         1.15         0.36 

  EYA4 MUTATED EYA4 WILD-TYPE 
          8.78           0.07 
  EYA4 MUTATED EYA4 WILD-TYPE 
         77.88          85.32 
  EYA4 MUTATED EYA4 WILD-TYPE 
        21.765         13.150 
[1] "8.8 - 77.9 (21.8)" "0.1 - 85.3 (13.2)"
    TCGA-05-4249     TCGA-05-4250     TCGA-05-4382     TCGA-05-4384 
"EYA4 WILD-TYPE" "EYA4 WILD-TYPE" "EYA4 WILD-TYPE" "EYA4 WILD-TYPE" 
    TCGA-05-4390     TCGA-05-4396     TCGA-05-4397     TCGA-05-4398 
"EYA4 WILD-TYPE"   "EYA4 MUTATED" "EYA4 WILD-TYPE"   "EYA4 MUTATED" 
    TCGA-05-4402     TCGA-05-4405     TCGA-05-4415     TCGA-05-4417 
"EYA4 WILD-TYPE" "EYA4 WILD-TYPE" "EYA4 WILD-TYPE" "EYA4 WILD-TYPE" 
    TCGA-05-4418     TCGA-05-4420     TCGA-05-4424     TCGA-05-4426 
"EYA4 WILD-TYPE" "EYA4 WILD-TYPE" "EYA4 WILD-TYPE" "EYA4 WILD-TYPE" 
    TCGA-05-4427     TCGA-05-4430     TCGA-05-4432     TCGA-05-4433 
"EYA4 WILD-TYPE" "EYA4 WILD-TYPE" "EYA4 WILD-TYPE" "EYA4 WILD-TYPE" 
    TCGA-05-4434     TCGA-05-5420     TCGA-05-5423     TCGA-05-5425 
"EYA4 WILD-TYPE" "EYA4 WILD-TYPE" "EYA4 WILD-TYPE" "EYA4 WILD-TYPE" 
    TCGA-05-5429     TCGA-05-5715     TCGA-35-3615     TCGA-35-4122 
"EYA4 WILD-TYPE" "EYA4 WILD-TYPE" "EYA4 WILD-TYPE" "EYA4 WILD-TYPE" 
    TCGA-35-4123     TCGA-35-5375     TCGA-38-4625     TCGA-38-4626 
"EYA4 WILD-TYPE" "EYA4 WILD-TYPE" "EYA4 WILD-TYPE" "EYA4 WILD-TYPE" 
    TCGA-38-4627     TCGA-38-4628     TCGA-38-4629     TCGA-38-4630 
"EYA4 WILD-TYPE" "EYA4 WILD-TYPE" "EYA4 WILD-TYPE" "EYA4 WILD-TYPE" 
    TCGA-38-4631     TCGA-38-4632     TCGA-38-6178     TCGA-44-2655 
"EYA4 WILD-TYPE"   "EYA4 MUTATED" "EYA4 WILD-TYPE" "EYA4 WILD-TYPE" 
    TCGA-44-2656     TCGA-44-2657     TCGA-44-2659     TCGA-44-2661 
"EYA4 WILD-TYPE" "EYA4 WILD-TYPE" "EYA4 WILD-TYPE" "EYA4 WILD-TYPE" 
    TCGA-44-2662     TCGA-44-2665     TCGA-44-2666     TCGA-44-2668 
"EYA4 WILD-TYPE" "EYA4 WILD-TYPE" "EYA4 WILD-TYPE" "EYA4 WILD-TYPE" 
    TCGA-44-3396     TCGA-44-3398     TCGA-44-3918     TCGA-44-3919 
"EYA4 WILD-TYPE" "EYA4 WILD-TYPE" "EYA4 WILD-TYPE" "EYA4 WILD-TYPE" 
    TCGA-44-4112     TCGA-44-5643     TCGA-44-5645     TCGA-44-6144 
"EYA4 WILD-TYPE" "EYA4 WILD-TYPE" "EYA4 WILD-TYPE" "EYA4 WILD-TYPE" 
    TCGA-44-6145     TCGA-44-6146     TCGA-44-6147     TCGA-44-6148 
"EYA4 WILD-TYPE" "EYA4 WILD-TYPE" "EYA4 WILD-TYPE" "EYA4 WILD-TYPE" 
    TCGA-44-6774     TCGA-44-6775     TCGA-44-6776     TCGA-44-6777 
"EYA4 WILD-TYPE" "EYA4 WILD-TYPE" "EYA4 WILD-TYPE" "EYA4 WILD-TYPE" 
    TCGA-44-6778     TCGA-44-6779     TCGA-49-4486     TCGA-49-4487 
"EYA4 WILD-TYPE" "EYA4 WILD-TYPE" "EYA4 WILD-TYPE" "EYA4 WILD-TYPE" 
    TCGA-49-4488     TCGA-49-4490     TCGA-49-4494     TCGA-49-4501 
  "EYA4 MUTATED" "EYA4 WILD-TYPE" "EYA4 WILD-TYPE" "EYA4 WILD-TYPE" 
    TCGA-49-4505     TCGA-49-4506     TCGA-49-4507     TCGA-49-4510 
"EYA4 WILD-TYPE" "EYA4 WILD-TYPE" "EYA4 WILD-TYPE" "EYA4 WILD-TYPE" 
    TCGA-49-4512     TCGA-49-4514     TCGA-49-6742     TCGA-49-6743 
"EYA4 WILD-TYPE" "EYA4 WILD-TYPE" "EYA4 WILD-TYPE"   "EYA4 MUTATED" 
    TCGA-49-6744     TCGA-49-6745     TCGA-50-5044     TCGA-50-5045 
"EYA4 WILD-TYPE" "EYA4 WILD-TYPE" "EYA4 WILD-TYPE" "EYA4 WILD-TYPE" 
    TCGA-50-5049     TCGA-50-5051     TCGA-50-5055     TCGA-50-5066 
"EYA4 WILD-TYPE"   "EYA4 MUTATED" "EYA4 WILD-TYPE" "EYA4 WILD-TYPE" 
    TCGA-50-5068     TCGA-50-5072     TCGA-50-5930     TCGA-50-5931 
"EYA4 WILD-TYPE" "EYA4 WILD-TYPE" "EYA4 WILD-TYPE"   "EYA4 MUTATED" 
    TCGA-50-5932     TCGA-50-5933     TCGA-50-5935     TCGA-50-5936 
"EYA4 WILD-TYPE"   "EYA4 MUTATED" "EYA4 WILD-TYPE" "EYA4 WILD-TYPE" 
    TCGA-50-5939     TCGA-50-5941     TCGA-50-5942     TCGA-50-5944 
"EYA4 WILD-TYPE" "EYA4 WILD-TYPE" "EYA4 WILD-TYPE" "EYA4 WILD-TYPE" 
    TCGA-50-5946     TCGA-50-6590     TCGA-50-6591     TCGA-50-6592 
"EYA4 WILD-TYPE" "EYA4 WILD-TYPE" "EYA4 WILD-TYPE" "EYA4 WILD-TYPE" 
    TCGA-50-6593     TCGA-50-6594     TCGA-50-6595     TCGA-50-6597 
"EYA4 WILD-TYPE" "EYA4 WILD-TYPE" "EYA4 WILD-TYPE" "EYA4 WILD-TYPE" 
    TCGA-55-1592     TCGA-55-1594     TCGA-55-1595     TCGA-55-1596 
"EYA4 WILD-TYPE" "EYA4 WILD-TYPE" "EYA4 WILD-TYPE" "EYA4 WILD-TYPE" 
    TCGA-55-5899     TCGA-55-6543     TCGA-55-6642     TCGA-55-6712 
"EYA4 WILD-TYPE" "EYA4 WILD-TYPE" "EYA4 WILD-TYPE" "EYA4 WILD-TYPE" 
    TCGA-64-1676     TCGA-64-1677     TCGA-64-1678     TCGA-64-1680 
"EYA4 WILD-TYPE" "EYA4 WILD-TYPE" "EYA4 WILD-TYPE" "EYA4 WILD-TYPE" 
    TCGA-64-5774     TCGA-64-5775     TCGA-64-5778     TCGA-64-5779 
"EYA4 WILD-TYPE" "EYA4 WILD-TYPE" "EYA4 WILD-TYPE" "EYA4 WILD-TYPE" 
    TCGA-64-5781     TCGA-64-5815     TCGA-67-3770     TCGA-67-3771 
"EYA4 WILD-TYPE" "EYA4 WILD-TYPE" "EYA4 WILD-TYPE" "EYA4 WILD-TYPE" 
    TCGA-67-3772     TCGA-67-3773     TCGA-67-3774     TCGA-67-6215 
"EYA4 WILD-TYPE" "EYA4 WILD-TYPE" "EYA4 WILD-TYPE" "EYA4 WILD-TYPE" 
    TCGA-67-6216     TCGA-67-6217     TCGA-71-6725     TCGA-73-4658 
"EYA4 WILD-TYPE" "EYA4 WILD-TYPE" "EYA4 WILD-TYPE" "EYA4 WILD-TYPE" 
    TCGA-73-4659     TCGA-73-4662     TCGA-73-4666     TCGA-73-4668 
"EYA4 WILD-TYPE" "EYA4 WILD-TYPE" "EYA4 WILD-TYPE" "EYA4 WILD-TYPE" 
    TCGA-73-4670     TCGA-73-4675     TCGA-73-4676     TCGA-73-4677 
"EYA4 WILD-TYPE" "EYA4 WILD-TYPE" "EYA4 WILD-TYPE" "EYA4 WILD-TYPE" 
    TCGA-91-6828     TCGA-91-6829     TCGA-91-6831     TCGA-91-6835 
"EYA4 WILD-TYPE" "EYA4 WILD-TYPE" "EYA4 WILD-TYPE" "EYA4 WILD-TYPE" 
    TCGA-91-6836 
"EYA4 WILD-TYPE" 
    TCGA-05-4249     TCGA-05-4250     TCGA-05-4382     TCGA-05-4384 
"EYA4 WILD-TYPE" "EYA4 WILD-TYPE" "EYA4 WILD-TYPE" "EYA4 WILD-TYPE" 
    TCGA-05-4390     TCGA-05-4396     TCGA-05-4397     TCGA-05-4398 
"EYA4 WILD-TYPE"   "EYA4 MUTATED" "EYA4 WILD-TYPE"   "EYA4 MUTATED" 
    TCGA-05-4402     TCGA-05-4405     TCGA-05-4415     TCGA-05-4417 
"EYA4 WILD-TYPE" "EYA4 WILD-TYPE" "EYA4 WILD-TYPE" "EYA4 WILD-TYPE" 
    TCGA-05-4418     TCGA-05-4420     TCGA-05-4424     TCGA-05-4426 
"EYA4 WILD-TYPE" "EYA4 WILD-TYPE" "EYA4 WILD-TYPE" "EYA4 WILD-TYPE" 
    TCGA-05-4427     TCGA-05-4430     TCGA-05-4432     TCGA-05-4433 
"EYA4 WILD-TYPE" "EYA4 WILD-TYPE" "EYA4 WILD-TYPE" "EYA4 WILD-TYPE" 
    TCGA-05-4434     TCGA-05-5420     TCGA-05-5423     TCGA-05-5425 
"EYA4 WILD-TYPE" "EYA4 WILD-TYPE" "EYA4 WILD-TYPE" "EYA4 WILD-TYPE" 
    TCGA-05-5429     TCGA-05-5715     TCGA-35-3615     TCGA-35-4122 
"EYA4 WILD-TYPE" "EYA4 WILD-TYPE" "EYA4 WILD-TYPE" "EYA4 WILD-TYPE" 
    TCGA-35-4123     TCGA-35-5375     TCGA-38-4625     TCGA-38-4626 
"EYA4 WILD-TYPE" "EYA4 WILD-TYPE" "EYA4 WILD-TYPE" "EYA4 WILD-TYPE" 
    TCGA-38-4627     TCGA-38-4628     TCGA-38-4629     TCGA-38-4630 
"EYA4 WILD-TYPE" "EYA4 WILD-TYPE" "EYA4 WILD-TYPE" "EYA4 WILD-TYPE" 
    TCGA-38-4631     TCGA-38-4632     TCGA-38-6178     TCGA-44-2655 
"EYA4 WILD-TYPE"   "EYA4 MUTATED" "EYA4 WILD-TYPE" "EYA4 WILD-TYPE" 
    TCGA-44-2656     TCGA-44-2657     TCGA-44-2659     TCGA-44-2661 
"EYA4 WILD-TYPE" "EYA4 WILD-TYPE" "EYA4 WILD-TYPE" "EYA4 WILD-TYPE" 
    TCGA-44-2662     TCGA-44-2665     TCGA-44-2666     TCGA-44-2668 
"EYA4 WILD-TYPE" "EYA4 WILD-TYPE" "EYA4 WILD-TYPE" "EYA4 WILD-TYPE" 
    TCGA-44-3396     TCGA-44-3398     TCGA-44-3918     TCGA-44-3919 
"EYA4 WILD-TYPE" "EYA4 WILD-TYPE" "EYA4 WILD-TYPE" "EYA4 WILD-TYPE" 
    TCGA-44-4112     TCGA-44-5643     TCGA-44-5645     TCGA-44-6144 
"EYA4 WILD-TYPE" "EYA4 WILD-TYPE" "EYA4 WILD-TYPE" "EYA4 WILD-TYPE" 
    TCGA-44-6145     TCGA-44-6146     TCGA-44-6147     TCGA-44-6148 
"EYA4 WILD-TYPE" "EYA4 WILD-TYPE" "EYA4 WILD-TYPE" "EYA4 WILD-TYPE" 
    TCGA-44-6774     TCGA-44-6775     TCGA-44-6776     TCGA-44-6777 
"EYA4 WILD-TYPE" "EYA4 WILD-TYPE" "EYA4 WILD-TYPE" "EYA4 WILD-TYPE" 
    TCGA-44-6778     TCGA-44-6779     TCGA-49-4486     TCGA-49-4487 
"EYA4 WILD-TYPE" "EYA4 WILD-TYPE" "EYA4 WILD-TYPE" "EYA4 WILD-TYPE" 
    TCGA-49-4488     TCGA-49-4490     TCGA-49-4494     TCGA-49-4501 
  "EYA4 MUTATED" "EYA4 WILD-TYPE" "EYA4 WILD-TYPE" "EYA4 WILD-TYPE" 
    TCGA-49-4505     TCGA-49-4506     TCGA-49-4507     TCGA-49-4510 
"EYA4 WILD-TYPE" "EYA4 WILD-TYPE" "EYA4 WILD-TYPE" "EYA4 WILD-TYPE" 
    TCGA-49-4512     TCGA-49-4514     TCGA-49-6742     TCGA-49-6743 
"EYA4 WILD-TYPE" "EYA4 WILD-TYPE" "EYA4 WILD-TYPE"   "EYA4 MUTATED" 
    TCGA-49-6744     TCGA-49-6745     TCGA-50-5044     TCGA-50-5045 
"EYA4 WILD-TYPE" "EYA4 WILD-TYPE" "EYA4 WILD-TYPE" "EYA4 WILD-TYPE" 
    TCGA-50-5049     TCGA-50-5051     TCGA-50-5055     TCGA-50-5066 
"EYA4 WILD-TYPE"   "EYA4 MUTATED" "EYA4 WILD-TYPE" "EYA4 WILD-TYPE" 
    TCGA-50-5068     TCGA-50-5072     TCGA-50-5930     TCGA-50-5931 
"EYA4 WILD-TYPE" "EYA4 WILD-TYPE" "EYA4 WILD-TYPE"   "EYA4 MUTATED" 
    TCGA-50-5932     TCGA-50-5933     TCGA-50-5935     TCGA-50-5936 
"EYA4 WILD-TYPE"   "EYA4 MUTATED" "EYA4 WILD-TYPE" "EYA4 WILD-TYPE" 
    TCGA-50-5939     TCGA-50-5941     TCGA-50-5942     TCGA-50-5944 
"EYA4 WILD-TYPE" "EYA4 WILD-TYPE" "EYA4 WILD-TYPE" "EYA4 WILD-TYPE" 
    TCGA-50-5946     TCGA-50-6590     TCGA-50-6591     TCGA-50-6592 
"EYA4 WILD-TYPE" "EYA4 WILD-TYPE" "EYA4 WILD-TYPE" "EYA4 WILD-TYPE" 
    TCGA-50-6593     TCGA-50-6594     TCGA-50-6595     TCGA-50-6597 
"EYA4 WILD-TYPE" "EYA4 WILD-TYPE" "EYA4 WILD-TYPE" "EYA4 WILD-TYPE" 
    TCGA-55-1592     TCGA-55-1594     TCGA-55-1595     TCGA-55-1596 
"EYA4 WILD-TYPE" "EYA4 WILD-TYPE" "EYA4 WILD-TYPE" "EYA4 WILD-TYPE" 
    TCGA-55-5899     TCGA-55-6543     TCGA-55-6642     TCGA-55-6712 
"EYA4 WILD-TYPE" "EYA4 WILD-TYPE" "EYA4 WILD-TYPE" "EYA4 WILD-TYPE" 
    TCGA-64-1676     TCGA-64-1677     TCGA-64-1678     TCGA-64-1680 
"EYA4 WILD-TYPE" "EYA4 WILD-TYPE" "EYA4 WILD-TYPE" "EYA4 WILD-TYPE" 
    TCGA-64-5774     TCGA-64-5775     TCGA-64-5778     TCGA-64-5779 
"EYA4 WILD-TYPE" "EYA4 WILD-TYPE" "EYA4 WILD-TYPE" "EYA4 WILD-TYPE" 
    TCGA-64-5781     TCGA-64-5815     TCGA-67-3770     TCGA-67-3771 
"EYA4 WILD-TYPE" "EYA4 WILD-TYPE" "EYA4 WILD-TYPE" "EYA4 WILD-TYPE" 
    TCGA-67-3772     TCGA-67-3773     TCGA-67-3774     TCGA-67-6215 
"EYA4 WILD-TYPE" "EYA4 WILD-TYPE" "EYA4 WILD-TYPE" "EYA4 WILD-TYPE" 
    TCGA-67-6216     TCGA-67-6217     TCGA-71-6725     TCGA-73-4658 
"EYA4 WILD-TYPE" "EYA4 WILD-TYPE" "EYA4 WILD-TYPE" "EYA4 WILD-TYPE" 
    TCGA-73-4659     TCGA-73-4662     TCGA-73-4666     TCGA-73-4668 
"EYA4 WILD-TYPE" "EYA4 WILD-TYPE" "EYA4 WILD-TYPE" "EYA4 WILD-TYPE" 
    TCGA-73-4670     TCGA-73-4675     TCGA-73-4676     TCGA-73-4677 
"EYA4 WILD-TYPE" "EYA4 WILD-TYPE" "EYA4 WILD-TYPE" "EYA4 WILD-TYPE" 
    TCGA-91-6828     TCGA-91-6829     TCGA-91-6831     TCGA-91-6835 
"EYA4 WILD-TYPE" "EYA4 WILD-TYPE" "EYA4 WILD-TYPE" "EYA4 WILD-TYPE" 
    TCGA-91-6836 
"EYA4 WILD-TYPE" 
    TCGA-05-4249     TCGA-05-4250     TCGA-05-4382     TCGA-05-4384 
"EYA4 WILD-TYPE" "EYA4 WILD-TYPE" "EYA4 WILD-TYPE" "EYA4 WILD-TYPE" 
    TCGA-05-4390     TCGA-05-4396     TCGA-05-4397     TCGA-05-4398 
"EYA4 WILD-TYPE"   "EYA4 MUTATED" "EYA4 WILD-TYPE"   "EYA4 MUTATED" 
    TCGA-05-4402     TCGA-05-4405     TCGA-05-4415     TCGA-05-4417 
"EYA4 WILD-TYPE" "EYA4 WILD-TYPE" "EYA4 WILD-TYPE" "EYA4 WILD-TYPE" 
    TCGA-05-4418     TCGA-05-4420     TCGA-05-4424     TCGA-05-4426 
"EYA4 WILD-TYPE" "EYA4 WILD-TYPE" "EYA4 WILD-TYPE" "EYA4 WILD-TYPE" 
    TCGA-05-4427     TCGA-05-4430     TCGA-05-4432     TCGA-05-4433 
"EYA4 WILD-TYPE" "EYA4 WILD-TYPE" "EYA4 WILD-TYPE" "EYA4 WILD-TYPE" 
    TCGA-05-4434     TCGA-05-5420     TCGA-05-5423     TCGA-05-5425 
"EYA4 WILD-TYPE" "EYA4 WILD-TYPE" "EYA4 WILD-TYPE" "EYA4 WILD-TYPE" 
    TCGA-05-5429     TCGA-05-5715     TCGA-35-3615     TCGA-35-4122 
"EYA4 WILD-TYPE" "EYA4 WILD-TYPE" "EYA4 WILD-TYPE" "EYA4 WILD-TYPE" 
    TCGA-35-4123     TCGA-35-5375     TCGA-38-4625     TCGA-38-4626 
"EYA4 WILD-TYPE" "EYA4 WILD-TYPE" "EYA4 WILD-TYPE" "EYA4 WILD-TYPE" 
    TCGA-38-4627     TCGA-38-4628     TCGA-38-4629     TCGA-38-4630 
"EYA4 WILD-TYPE" "EYA4 WILD-TYPE" "EYA4 WILD-TYPE" "EYA4 WILD-TYPE" 
    TCGA-38-4631     TCGA-38-4632     TCGA-38-6178     TCGA-44-2655 
"EYA4 WILD-TYPE"   "EYA4 MUTATED" "EYA4 WILD-TYPE" "EYA4 WILD-TYPE" 
    TCGA-44-2656     TCGA-44-2657     TCGA-44-2659     TCGA-44-2661 
"EYA4 WILD-TYPE" "EYA4 WILD-TYPE" "EYA4 WILD-TYPE" "EYA4 WILD-TYPE" 
    TCGA-44-2662     TCGA-44-2665     TCGA-44-2666     TCGA-44-2668 
"EYA4 WILD-TYPE" "EYA4 WILD-TYPE" "EYA4 WILD-TYPE" "EYA4 WILD-TYPE" 
    TCGA-44-3396     TCGA-44-3398     TCGA-44-3918     TCGA-44-3919 
"EYA4 WILD-TYPE" "EYA4 WILD-TYPE" "EYA4 WILD-TYPE" "EYA4 WILD-TYPE" 
    TCGA-44-4112     TCGA-44-5643     TCGA-44-5645     TCGA-44-6144 
"EYA4 WILD-TYPE" "EYA4 WILD-TYPE" "EYA4 WILD-TYPE" "EYA4 WILD-TYPE" 
    TCGA-44-6145     TCGA-44-6146     TCGA-44-6147     TCGA-44-6148 
"EYA4 WILD-TYPE" "EYA4 WILD-TYPE" "EYA4 WILD-TYPE" "EYA4 WILD-TYPE" 
    TCGA-44-6774     TCGA-44-6775     TCGA-44-6776     TCGA-44-6777 
"EYA4 WILD-TYPE" "EYA4 WILD-TYPE" "EYA4 WILD-TYPE" "EYA4 WILD-TYPE" 
    TCGA-44-6778     TCGA-44-6779     TCGA-49-4486     TCGA-49-4487 
"EYA4 WILD-TYPE" "EYA4 WILD-TYPE" "EYA4 WILD-TYPE" "EYA4 WILD-TYPE" 
    TCGA-49-4488     TCGA-49-4490     TCGA-49-4494     TCGA-49-4501 
  "EYA4 MUTATED" "EYA4 WILD-TYPE" "EYA4 WILD-TYPE" "EYA4 WILD-TYPE" 
    TCGA-49-4505     TCGA-49-4506     TCGA-49-4507     TCGA-49-4510 
"EYA4 WILD-TYPE" "EYA4 WILD-TYPE" "EYA4 WILD-TYPE" "EYA4 WILD-TYPE" 
    TCGA-49-4512     TCGA-49-4514     TCGA-49-6742     TCGA-49-6743 
"EYA4 WILD-TYPE" "EYA4 WILD-TYPE" "EYA4 WILD-TYPE"   "EYA4 MUTATED" 
    TCGA-49-6744     TCGA-49-6745     TCGA-50-5044     TCGA-50-5045 
"EYA4 WILD-TYPE" "EYA4 WILD-TYPE" "EYA4 WILD-TYPE" "EYA4 WILD-TYPE" 
    TCGA-50-5049     TCGA-50-5051     TCGA-50-5055     TCGA-50-5066 
"EYA4 WILD-TYPE"   "EYA4 MUTATED" "EYA4 WILD-TYPE" "EYA4 WILD-TYPE" 
    TCGA-50-5068     TCGA-50-5072     TCGA-50-5930     TCGA-50-5931 
"EYA4 WILD-TYPE" "EYA4 WILD-TYPE" "EYA4 WILD-TYPE"   "EYA4 MUTATED" 
    TCGA-50-5932     TCGA-50-5933     TCGA-50-5935     TCGA-50-5936 
"EYA4 WILD-TYPE"   "EYA4 MUTATED" "EYA4 WILD-TYPE" "EYA4 WILD-TYPE" 
    TCGA-50-5939     TCGA-50-5941     TCGA-50-5942     TCGA-50-5944 
"EYA4 WILD-TYPE" "EYA4 WILD-TYPE" "EYA4 WILD-TYPE" "EYA4 WILD-TYPE" 
    TCGA-50-5946     TCGA-50-6590     TCGA-50-6591     TCGA-50-6592 
"EYA4 WILD-TYPE" "EYA4 WILD-TYPE" "EYA4 WILD-TYPE" "EYA4 WILD-TYPE" 
    TCGA-50-6593     TCGA-50-6594     TCGA-50-6595     TCGA-50-6597 
"EYA4 WILD-TYPE" "EYA4 WILD-TYPE" "EYA4 WILD-TYPE" "EYA4 WILD-TYPE" 
    TCGA-55-1592     TCGA-55-1594     TCGA-55-1595     TCGA-55-1596 
"EYA4 WILD-TYPE" "EYA4 WILD-TYPE" "EYA4 WILD-TYPE" "EYA4 WILD-TYPE" 
    TCGA-55-5899     TCGA-55-6543     TCGA-55-6642     TCGA-55-6712 
"EYA4 WILD-TYPE" "EYA4 WILD-TYPE" "EYA4 WILD-TYPE" "EYA4 WILD-TYPE" 
    TCGA-64-1676     TCGA-64-1677     TCGA-64-1678     TCGA-64-1680 
"EYA4 WILD-TYPE" "EYA4 WILD-TYPE" "EYA4 WILD-TYPE" "EYA4 WILD-TYPE" 
    TCGA-64-5774     TCGA-64-5775     TCGA-64-5778     TCGA-64-5779 
"EYA4 WILD-TYPE" "EYA4 WILD-TYPE" "EYA4 WILD-TYPE" "EYA4 WILD-TYPE" 
    TCGA-64-5781     TCGA-64-5815     TCGA-67-3770     TCGA-67-3771 
"EYA4 WILD-TYPE" "EYA4 WILD-TYPE" "EYA4 WILD-TYPE" "EYA4 WILD-TYPE" 
    TCGA-67-3772     TCGA-67-3773     TCGA-67-3774     TCGA-67-6215 
"EYA4 WILD-TYPE" "EYA4 WILD-TYPE" "EYA4 WILD-TYPE" "EYA4 WILD-TYPE" 
    TCGA-67-6216     TCGA-67-6217     TCGA-71-6725     TCGA-73-4658 
"EYA4 WILD-TYPE" "EYA4 WILD-TYPE" "EYA4 WILD-TYPE" "EYA4 WILD-TYPE" 
    TCGA-73-4659     TCGA-73-4662     TCGA-73-4666     TCGA-73-4668 
"EYA4 WILD-TYPE" "EYA4 WILD-TYPE" "EYA4 WILD-TYPE" "EYA4 WILD-TYPE" 
    TCGA-73-4670     TCGA-73-4675     TCGA-73-4676     TCGA-73-4677 
"EYA4 WILD-TYPE" "EYA4 WILD-TYPE" "EYA4 WILD-TYPE" "EYA4 WILD-TYPE" 
    TCGA-91-6828     TCGA-91-6829     TCGA-91-6831     TCGA-91-6835 
"EYA4 WILD-TYPE" "EYA4 WILD-TYPE" "EYA4 WILD-TYPE" "EYA4 WILD-TYPE" 
    TCGA-91-6836 
"EYA4 WILD-TYPE" 
[1] "hr=" "1"  
D221V2, continuous
D221V3, binary
[1] "tbl2"
                cls
clus             [,1] [,2]
  EYA4 MUTATED      6    4
  EYA4 WILD-TYPE   87   75
        clus
vv       EYA4 MUTATED EYA4 WILD-TYPE
  FEMALE            6             87
  MALE              4             75
D221V4, continuous
D221V5, multiclass
D221V6, multiclass
    clus
vv   EYA4 MUTATED EYA4 WILD-TYPE
  T1            2             39
  T2            4            104
  T3            1             13
  T4            3              5
D221V7, multiclass
       clus
vv      EYA4 MUTATED EYA4 WILD-TYPE
  N0               4             91
  N1               2             35
  N2+N3            4             31
D221V8, multiclass
    clus
vv   EYA4 MUTATED EYA4 WILD-TYPE
  M0            6            131
  M1            1              8
  MX            3             19
D221V9, multiclass
     clus
vv    EYA4 MUTATED EYA4 WILD-TYPE
  I              3             85
  II             1             32
  III            5             34
  IV             1              8
D221V10, binary
[1] "tbl2"
                cls
clus             [,1] [,2]
  EYA4 MUTATED      2    8
  EYA4 WILD-TYPE   14  148
     clus
vv    EYA4 MUTATED EYA4 WILD-TYPE
  NO             2             14
  YES            8            148
D221V11, continuous
D221V12, continuous
D221V13, multiclass
                                             clus
vv                                            EYA4 MUTATED EYA4 WILD-TYPE
  CURRENT REFORMED SMOKER FOR < OR = 15 YEARS            4             58
  CURRENT REFORMED SMOKER FOR > 15 YEARS                 2             44
  CURRENT SMOKER                                         2             26
  LIFELONG NON-SMOKER                                    0             24
D221V14, continuous
[1] "Remove cluster labels:" "EYA4 MUTATED"          
clus
  EYA4 MUTATED EYA4 WILD-TYPE 
             1             67 
    TCGA-05-4384     TCGA-05-4390     TCGA-05-4405     TCGA-05-4410 
"EYA4 WILD-TYPE" "EYA4 WILD-TYPE" "EYA4 WILD-TYPE" "EYA4 WILD-TYPE" 
    TCGA-05-4415     TCGA-05-4417     TCGA-05-4424     TCGA-05-4427 
"EYA4 WILD-TYPE" "EYA4 WILD-TYPE" "EYA4 WILD-TYPE" "EYA4 WILD-TYPE" 
    TCGA-05-4433     TCGA-05-5420     TCGA-05-5423     TCGA-05-5425 
"EYA4 WILD-TYPE" "EYA4 WILD-TYPE" "EYA4 WILD-TYPE" "EYA4 WILD-TYPE" 
    TCGA-05-5428     TCGA-35-4122     TCGA-35-4123     TCGA-35-5375 
"EYA4 WILD-TYPE" "EYA4 WILD-TYPE" "EYA4 WILD-TYPE" "EYA4 WILD-TYPE" 
    TCGA-38-4625     TCGA-38-4626     TCGA-44-2655     TCGA-44-2656 
"EYA4 WILD-TYPE" "EYA4 WILD-TYPE" "EYA4 WILD-TYPE" "EYA4 WILD-TYPE" 
    TCGA-44-2657     TCGA-44-2659     TCGA-44-2662     TCGA-44-2666 
"EYA4 WILD-TYPE" "EYA4 WILD-TYPE" "EYA4 WILD-TYPE" "EYA4 WILD-TYPE" 
    TCGA-44-2668     TCGA-44-3396     TCGA-44-3398     TCGA-44-3918 
"EYA4 WILD-TYPE" "EYA4 WILD-TYPE" "EYA4 WILD-TYPE" "EYA4 WILD-TYPE" 
    TCGA-44-4112     TCGA-44-5645     TCGA-44-6144     TCGA-44-6145 
"EYA4 WILD-TYPE" "EYA4 WILD-TYPE" "EYA4 WILD-TYPE" "EYA4 WILD-TYPE" 
    TCGA-44-6147     TCGA-44-6148     TCGA-44-6774     TCGA-44-6775 
"EYA4 WILD-TYPE" "EYA4 WILD-TYPE" "EYA4 WILD-TYPE" "EYA4 WILD-TYPE" 
    TCGA-44-6776     TCGA-44-6777     TCGA-44-6778     TCGA-44-6779 
"EYA4 WILD-TYPE" "EYA4 WILD-TYPE" "EYA4 WILD-TYPE" "EYA4 WILD-TYPE" 
    TCGA-49-4486     TCGA-49-4494     TCGA-49-4505     TCGA-55-1592 
"EYA4 WILD-TYPE" "EYA4 WILD-TYPE" "EYA4 WILD-TYPE" "EYA4 WILD-TYPE" 
    TCGA-55-1594     TCGA-55-1595     TCGA-55-1596     TCGA-55-5899 
"EYA4 WILD-TYPE" "EYA4 WILD-TYPE" "EYA4 WILD-TYPE" "EYA4 WILD-TYPE" 
    TCGA-55-6642     TCGA-55-6712     TCGA-64-1677     TCGA-64-1678 
"EYA4 WILD-TYPE" "EYA4 WILD-TYPE" "EYA4 WILD-TYPE" "EYA4 WILD-TYPE" 
    TCGA-64-1680     TCGA-64-5774     TCGA-64-5775     TCGA-64-5778 
"EYA4 WILD-TYPE" "EYA4 WILD-TYPE" "EYA4 WILD-TYPE" "EYA4 WILD-TYPE" 
    TCGA-64-5779     TCGA-64-5781     TCGA-73-4659     TCGA-73-4662 
"EYA4 WILD-TYPE" "EYA4 WILD-TYPE" "EYA4 WILD-TYPE" "EYA4 WILD-TYPE" 
    TCGA-73-4666     TCGA-73-4668     TCGA-73-4670     TCGA-73-4675 
"EYA4 WILD-TYPE" "EYA4 WILD-TYPE" "EYA4 WILD-TYPE" "EYA4 WILD-TYPE" 
    TCGA-73-4676     TCGA-91-6829     TCGA-91-6836 
"EYA4 WILD-TYPE" "EYA4 WILD-TYPE" "EYA4 WILD-TYPE" 

Clustering(222) Variable = FTSJD1 MUTATION ANALYSIS
D222V1, survival
                  sevent
clus2               0  1
  FTSJD1 MUTATED    4  2
  FTSJD1 WILD-TYPE 95 48
  FTSJD1 MUTATED FTSJD1 WILD-TYPE 
               6              143 
  FTSJD1 MUTATED FTSJD1 WILD-TYPE 
               2               48 
$`FTSJD1 MUTATED`
TCGA-05-4396 TCGA-05-4420 TCGA-38-4625 TCGA-44-3398 TCGA-44-4112 TCGA-73-4658 
        9.96        29.95        47.61         8.32         4.60        52.57 

$`FTSJD1 WILD-TYPE`
TCGA-05-4249 TCGA-05-4250 TCGA-05-4382 TCGA-05-4384 TCGA-05-4390 TCGA-05-4397 
       38.07         3.98        19.92        14.01        37.02        24.03 
TCGA-05-4398 TCGA-05-4402 TCGA-05-4405 TCGA-05-4415 TCGA-05-4417 TCGA-05-4418 
       47.05         8.02        20.05         2.96        14.93         8.98 
TCGA-05-4424 TCGA-05-4426 TCGA-05-4427 TCGA-05-4430 TCGA-05-4432 TCGA-05-4433 
       30.02        26.01        26.01        25.02        25.02        24.00 
TCGA-05-4434 TCGA-05-5420 TCGA-05-5423 TCGA-05-5425 TCGA-05-5429 TCGA-05-5715 
       15.02         1.02         4.96         2.96         0.99         2.04 
TCGA-35-3615 TCGA-35-4122 TCGA-35-4123 TCGA-35-5375 TCGA-38-4626 TCGA-38-4627 
        0.46         7.36         5.95         8.68        85.32        37.71 
TCGA-38-4628 TCGA-38-4629 TCGA-38-4630 TCGA-38-4631 TCGA-38-4632 TCGA-38-6178 
       49.02        28.37        35.28        11.64        44.61         5.19 
TCGA-44-2655 TCGA-44-2656 TCGA-44-2657 TCGA-44-2659 TCGA-44-2661 TCGA-44-2662 
       18.87        19.10        13.15        17.39         3.39        15.78 
TCGA-44-2665 TCGA-44-2666 TCGA-44-2668 TCGA-44-3396 TCGA-44-3918 TCGA-44-3919 
       13.15         3.19         8.09        10.22         6.44         6.21 
TCGA-44-5643 TCGA-44-5645 TCGA-44-6144 TCGA-44-6145 TCGA-44-6146 TCGA-44-6147 
        3.48         6.84         0.30         3.35         9.93         7.76 
TCGA-44-6148 TCGA-44-6774 TCGA-44-6775 TCGA-44-6776 TCGA-44-6777 TCGA-44-6778 
        3.12         5.42         2.70        63.72        32.45        36.49 
TCGA-44-6779 TCGA-49-4486 TCGA-49-4487 TCGA-49-4488 TCGA-49-4490 TCGA-49-4494 
       16.41        76.21        28.11        28.57        12.66        35.54 
TCGA-49-4501 TCGA-49-4505 TCGA-49-4506 TCGA-49-4507 TCGA-49-4510 TCGA-49-4512 
       46.72        14.07        32.84         8.81        29.46        29.75 
TCGA-49-4514 TCGA-49-6742 TCGA-49-6743 TCGA-49-6744 TCGA-49-6745 TCGA-50-5044 
       43.20        15.02        12.13        12.99         4.93        20.48 
TCGA-50-5045 TCGA-50-5049 TCGA-50-5051 TCGA-50-5055 TCGA-50-5066 TCGA-50-5068 
       71.47        48.82        14.96        25.81         9.76        49.28 
TCGA-50-5072 TCGA-50-5930 TCGA-50-5931 TCGA-50-5932 TCGA-50-5933 TCGA-50-5935 
        8.05         9.27         8.78        35.87        77.88        21.47 
TCGA-50-5936 TCGA-50-5939 TCGA-50-5941 TCGA-50-5942 TCGA-50-5944 TCGA-50-5946 
        8.45        15.12         9.37         4.44        12.26        11.47 
TCGA-50-6590 TCGA-50-6591 TCGA-50-6592 TCGA-50-6593 TCGA-50-6594 TCGA-50-6595 
       42.31         3.88        25.51        11.05        12.16         6.21 
TCGA-50-6597 TCGA-55-1592 TCGA-55-1594 TCGA-55-1595 TCGA-55-1596 TCGA-55-5899 
       33.37        23.05        38.73        48.62        45.17         2.86 
TCGA-55-6543 TCGA-55-6642 TCGA-55-6712 TCGA-64-1676 TCGA-64-1677 TCGA-64-1678 
        0.07        32.61         0.79        56.81        20.65        39.09 
TCGA-64-1680 TCGA-64-5774 TCGA-64-5775 TCGA-64-5778 TCGA-64-5779 TCGA-64-5781 
       37.02        83.84         0.10        30.44        16.67        39.52 
TCGA-64-5815 TCGA-67-3770 TCGA-67-3771 TCGA-67-3772 TCGA-67-3773 TCGA-67-3774 
        7.33         0.99         1.97         0.59         2.04         0.59 
TCGA-67-6215 TCGA-67-6216 TCGA-67-6217 TCGA-71-6725 TCGA-73-4659 TCGA-73-4662 
        0.89         0.69        13.87         2.01        23.38        29.95 
TCGA-73-4666 TCGA-73-4668 TCGA-73-4670 TCGA-73-4675 TCGA-73-4676 TCGA-73-4677 
       20.28        15.35         0.46         1.32         4.01         1.25 
TCGA-91-6828 TCGA-91-6829 TCGA-91-6831 TCGA-91-6835 TCGA-91-6836 
        1.22        41.33         1.28         1.15         0.36 

  FTSJD1 MUTATED FTSJD1 WILD-TYPE 
            4.60             0.07 
  FTSJD1 MUTATED FTSJD1 WILD-TYPE 
           52.57            85.32 
  FTSJD1 MUTATED FTSJD1 WILD-TYPE 
          19.955           13.870 
[1] "4.6 - 52.6 (20.0)" "0.1 - 85.3 (13.9)"
      TCGA-05-4249       TCGA-05-4250       TCGA-05-4382       TCGA-05-4384 
"FTSJD1 WILD-TYPE" "FTSJD1 WILD-TYPE" "FTSJD1 WILD-TYPE" "FTSJD1 WILD-TYPE" 
      TCGA-05-4390       TCGA-05-4396       TCGA-05-4397       TCGA-05-4398 
"FTSJD1 WILD-TYPE"   "FTSJD1 MUTATED" "FTSJD1 WILD-TYPE" "FTSJD1 WILD-TYPE" 
      TCGA-05-4402       TCGA-05-4405       TCGA-05-4415       TCGA-05-4417 
"FTSJD1 WILD-TYPE" "FTSJD1 WILD-TYPE" "FTSJD1 WILD-TYPE" "FTSJD1 WILD-TYPE" 
      TCGA-05-4418       TCGA-05-4420       TCGA-05-4424       TCGA-05-4426 
"FTSJD1 WILD-TYPE"   "FTSJD1 MUTATED" "FTSJD1 WILD-TYPE" "FTSJD1 WILD-TYPE" 
      TCGA-05-4427       TCGA-05-4430       TCGA-05-4432       TCGA-05-4433 
"FTSJD1 WILD-TYPE" "FTSJD1 WILD-TYPE" "FTSJD1 WILD-TYPE" "FTSJD1 WILD-TYPE" 
      TCGA-05-4434       TCGA-05-5420       TCGA-05-5423       TCGA-05-5425 
"FTSJD1 WILD-TYPE" "FTSJD1 WILD-TYPE" "FTSJD1 WILD-TYPE" "FTSJD1 WILD-TYPE" 
      TCGA-05-5429       TCGA-05-5715       TCGA-35-3615       TCGA-35-4122 
"FTSJD1 WILD-TYPE" "FTSJD1 WILD-TYPE" "FTSJD1 WILD-TYPE" "FTSJD1 WILD-TYPE" 
      TCGA-35-4123       TCGA-35-5375       TCGA-38-4625       TCGA-38-4626 
"FTSJD1 WILD-TYPE" "FTSJD1 WILD-TYPE"   "FTSJD1 MUTATED" "FTSJD1 WILD-TYPE" 
      TCGA-38-4627       TCGA-38-4628       TCGA-38-4629       TCGA-38-4630 
"FTSJD1 WILD-TYPE" "FTSJD1 WILD-TYPE" "FTSJD1 WILD-TYPE" "FTSJD1 WILD-TYPE" 
      TCGA-38-4631       TCGA-38-4632       TCGA-38-6178       TCGA-44-2655 
"FTSJD1 WILD-TYPE" "FTSJD1 WILD-TYPE" "FTSJD1 WILD-TYPE" "FTSJD1 WILD-TYPE" 
      TCGA-44-2656       TCGA-44-2657       TCGA-44-2659       TCGA-44-2661 
"FTSJD1 WILD-TYPE" "FTSJD1 WILD-TYPE" "FTSJD1 WILD-TYPE" "FTSJD1 WILD-TYPE" 
      TCGA-44-2662       TCGA-44-2665       TCGA-44-2666       TCGA-44-2668 
"FTSJD1 WILD-TYPE" "FTSJD1 WILD-TYPE" "FTSJD1 WILD-TYPE" "FTSJD1 WILD-TYPE" 
      TCGA-44-3396       TCGA-44-3398       TCGA-44-3918       TCGA-44-3919 
"FTSJD1 WILD-TYPE"   "FTSJD1 MUTATED" "FTSJD1 WILD-TYPE" "FTSJD1 WILD-TYPE" 
      TCGA-44-4112       TCGA-44-5643       TCGA-44-5645       TCGA-44-6144 
  "FTSJD1 MUTATED" "FTSJD1 WILD-TYPE" "FTSJD1 WILD-TYPE" "FTSJD1 WILD-TYPE" 
      TCGA-44-6145       TCGA-44-6146       TCGA-44-6147       TCGA-44-6148 
"FTSJD1 WILD-TYPE" "FTSJD1 WILD-TYPE" "FTSJD1 WILD-TYPE" "FTSJD1 WILD-TYPE" 
      TCGA-44-6774       TCGA-44-6775       TCGA-44-6776       TCGA-44-6777 
"FTSJD1 WILD-TYPE" "FTSJD1 WILD-TYPE" "FTSJD1 WILD-TYPE" "FTSJD1 WILD-TYPE" 
      TCGA-44-6778       TCGA-44-6779       TCGA-49-4486       TCGA-49-4487 
"FTSJD1 WILD-TYPE" "FTSJD1 WILD-TYPE" "FTSJD1 WILD-TYPE" "FTSJD1 WILD-TYPE" 
      TCGA-49-4488       TCGA-49-4490       TCGA-49-4494       TCGA-49-4501 
"FTSJD1 WILD-TYPE" "FTSJD1 WILD-TYPE" "FTSJD1 WILD-TYPE" "FTSJD1 WILD-TYPE" 
      TCGA-49-4505       TCGA-49-4506       TCGA-49-4507       TCGA-49-4510 
"FTSJD1 WILD-TYPE" "FTSJD1 WILD-TYPE" "FTSJD1 WILD-TYPE" "FTSJD1 WILD-TYPE" 
      TCGA-49-4512       TCGA-49-4514       TCGA-49-6742       TCGA-49-6743 
"FTSJD1 WILD-TYPE" "FTSJD1 WILD-TYPE" "FTSJD1 WILD-TYPE" "FTSJD1 WILD-TYPE" 
      TCGA-49-6744       TCGA-49-6745       TCGA-50-5044       TCGA-50-5045 
"FTSJD1 WILD-TYPE" "FTSJD1 WILD-TYPE" "FTSJD1 WILD-TYPE" "FTSJD1 WILD-TYPE" 
      TCGA-50-5049       TCGA-50-5051       TCGA-50-5055       TCGA-50-5066 
"FTSJD1 WILD-TYPE" "FTSJD1 WILD-TYPE" "FTSJD1 WILD-TYPE" "FTSJD1 WILD-TYPE" 
      TCGA-50-5068       TCGA-50-5072       TCGA-50-5930       TCGA-50-5931 
"FTSJD1 WILD-TYPE" "FTSJD1 WILD-TYPE" "FTSJD1 WILD-TYPE" "FTSJD1 WILD-TYPE" 
      TCGA-50-5932       TCGA-50-5933       TCGA-50-5935       TCGA-50-5936 
"FTSJD1 WILD-TYPE" "FTSJD1 WILD-TYPE" "FTSJD1 WILD-TYPE" "FTSJD1 WILD-TYPE" 
      TCGA-50-5939       TCGA-50-5941       TCGA-50-5942       TCGA-50-5944 
"FTSJD1 WILD-TYPE" "FTSJD1 WILD-TYPE" "FTSJD1 WILD-TYPE" "FTSJD1 WILD-TYPE" 
      TCGA-50-5946       TCGA-50-6590       TCGA-50-6591       TCGA-50-6592 
"FTSJD1 WILD-TYPE" "FTSJD1 WILD-TYPE" "FTSJD1 WILD-TYPE" "FTSJD1 WILD-TYPE" 
      TCGA-50-6593       TCGA-50-6594       TCGA-50-6595       TCGA-50-6597 
"FTSJD1 WILD-TYPE" "FTSJD1 WILD-TYPE" "FTSJD1 WILD-TYPE" "FTSJD1 WILD-TYPE" 
      TCGA-55-1592       TCGA-55-1594       TCGA-55-1595       TCGA-55-1596 
"FTSJD1 WILD-TYPE" "FTSJD1 WILD-TYPE" "FTSJD1 WILD-TYPE" "FTSJD1 WILD-TYPE" 
      TCGA-55-5899       TCGA-55-6543       TCGA-55-6642       TCGA-55-6712 
"FTSJD1 WILD-TYPE" "FTSJD1 WILD-TYPE" "FTSJD1 WILD-TYPE" "FTSJD1 WILD-TYPE" 
      TCGA-64-1676       TCGA-64-1677       TCGA-64-1678       TCGA-64-1680 
"FTSJD1 WILD-TYPE" "FTSJD1 WILD-TYPE" "FTSJD1 WILD-TYPE" "FTSJD1 WILD-TYPE" 
      TCGA-64-5774       TCGA-64-5775       TCGA-64-5778       TCGA-64-5779 
"FTSJD1 WILD-TYPE" "FTSJD1 WILD-TYPE" "FTSJD1 WILD-TYPE" "FTSJD1 WILD-TYPE" 
      TCGA-64-5781       TCGA-64-5815       TCGA-67-3770       TCGA-67-3771 
"FTSJD1 WILD-TYPE" "FTSJD1 WILD-TYPE" "FTSJD1 WILD-TYPE" "FTSJD1 WILD-TYPE" 
      TCGA-67-3772       TCGA-67-3773       TCGA-67-3774       TCGA-67-6215 
"FTSJD1 WILD-TYPE" "FTSJD1 WILD-TYPE" "FTSJD1 WILD-TYPE" "FTSJD1 WILD-TYPE" 
      TCGA-67-6216       TCGA-67-6217       TCGA-71-6725       TCGA-73-4658 
"FTSJD1 WILD-TYPE" "FTSJD1 WILD-TYPE" "FTSJD1 WILD-TYPE"   "FTSJD1 MUTATED" 
      TCGA-73-4659       TCGA-73-4662       TCGA-73-4666       TCGA-73-4668 
"FTSJD1 WILD-TYPE" "FTSJD1 WILD-TYPE" "FTSJD1 WILD-TYPE" "FTSJD1 WILD-TYPE" 
      TCGA-73-4670       TCGA-73-4675       TCGA-73-4676       TCGA-73-4677 
"FTSJD1 WILD-TYPE" "FTSJD1 WILD-TYPE" "FTSJD1 WILD-TYPE" "FTSJD1 WILD-TYPE" 
      TCGA-91-6828       TCGA-91-6829       TCGA-91-6831       TCGA-91-6835 
"FTSJD1 WILD-TYPE" "FTSJD1 WILD-TYPE" "FTSJD1 WILD-TYPE" "FTSJD1 WILD-TYPE" 
      TCGA-91-6836 
"FTSJD1 WILD-TYPE" 
      TCGA-05-4249       TCGA-05-4250       TCGA-05-4382       TCGA-05-4384 
"FTSJD1 WILD-TYPE" "FTSJD1 WILD-TYPE" "FTSJD1 WILD-TYPE" "FTSJD1 WILD-TYPE" 
      TCGA-05-4390       TCGA-05-4396       TCGA-05-4397       TCGA-05-4398 
"FTSJD1 WILD-TYPE"   "FTSJD1 MUTATED" "FTSJD1 WILD-TYPE" "FTSJD1 WILD-TYPE" 
      TCGA-05-4402       TCGA-05-4405       TCGA-05-4415       TCGA-05-4417 
"FTSJD1 WILD-TYPE" "FTSJD1 WILD-TYPE" "FTSJD1 WILD-TYPE" "FTSJD1 WILD-TYPE" 
      TCGA-05-4418       TCGA-05-4420       TCGA-05-4424       TCGA-05-4426 
"FTSJD1 WILD-TYPE"   "FTSJD1 MUTATED" "FTSJD1 WILD-TYPE" "FTSJD1 WILD-TYPE" 
      TCGA-05-4427       TCGA-05-4430       TCGA-05-4432       TCGA-05-4433 
"FTSJD1 WILD-TYPE" "FTSJD1 WILD-TYPE" "FTSJD1 WILD-TYPE" "FTSJD1 WILD-TYPE" 
      TCGA-05-4434       TCGA-05-5420       TCGA-05-5423       TCGA-05-5425 
"FTSJD1 WILD-TYPE" "FTSJD1 WILD-TYPE" "FTSJD1 WILD-TYPE" "FTSJD1 WILD-TYPE" 
      TCGA-05-5429       TCGA-05-5715       TCGA-35-3615       TCGA-35-4122 
"FTSJD1 WILD-TYPE" "FTSJD1 WILD-TYPE" "FTSJD1 WILD-TYPE" "FTSJD1 WILD-TYPE" 
      TCGA-35-4123       TCGA-35-5375       TCGA-38-4625       TCGA-38-4626 
"FTSJD1 WILD-TYPE" "FTSJD1 WILD-TYPE"   "FTSJD1 MUTATED" "FTSJD1 WILD-TYPE" 
      TCGA-38-4627       TCGA-38-4628       TCGA-38-4629       TCGA-38-4630 
"FTSJD1 WILD-TYPE" "FTSJD1 WILD-TYPE" "FTSJD1 WILD-TYPE" "FTSJD1 WILD-TYPE" 
      TCGA-38-4631       TCGA-38-4632       TCGA-38-6178       TCGA-44-2655 
"FTSJD1 WILD-TYPE" "FTSJD1 WILD-TYPE" "FTSJD1 WILD-TYPE" "FTSJD1 WILD-TYPE" 
      TCGA-44-2656       TCGA-44-2657       TCGA-44-2659       TCGA-44-2661 
"FTSJD1 WILD-TYPE" "FTSJD1 WILD-TYPE" "FTSJD1 WILD-TYPE" "FTSJD1 WILD-TYPE" 
      TCGA-44-2662       TCGA-44-2665       TCGA-44-2666       TCGA-44-2668 
"FTSJD1 WILD-TYPE" "FTSJD1 WILD-TYPE" "FTSJD1 WILD-TYPE" "FTSJD1 WILD-TYPE" 
      TCGA-44-3396       TCGA-44-3398       TCGA-44-3918       TCGA-44-3919 
"FTSJD1 WILD-TYPE"   "FTSJD1 MUTATED" "FTSJD1 WILD-TYPE" "FTSJD1 WILD-TYPE" 
      TCGA-44-4112       TCGA-44-5643       TCGA-44-5645       TCGA-44-6144 
  "FTSJD1 MUTATED" "FTSJD1 WILD-TYPE" "FTSJD1 WILD-TYPE" "FTSJD1 WILD-TYPE" 
      TCGA-44-6145       TCGA-44-6146       TCGA-44-6147       TCGA-44-6148 
"FTSJD1 WILD-TYPE" "FTSJD1 WILD-TYPE" "FTSJD1 WILD-TYPE" "FTSJD1 WILD-TYPE" 
      TCGA-44-6774       TCGA-44-6775       TCGA-44-6776       TCGA-44-6777 
"FTSJD1 WILD-TYPE" "FTSJD1 WILD-TYPE" "FTSJD1 WILD-TYPE" "FTSJD1 WILD-TYPE" 
      TCGA-44-6778       TCGA-44-6779       TCGA-49-4486       TCGA-49-4487 
"FTSJD1 WILD-TYPE" "FTSJD1 WILD-TYPE" "FTSJD1 WILD-TYPE" "FTSJD1 WILD-TYPE" 
      TCGA-49-4488       TCGA-49-4490       TCGA-49-4494       TCGA-49-4501 
"FTSJD1 WILD-TYPE" "FTSJD1 WILD-TYPE" "FTSJD1 WILD-TYPE" "FTSJD1 WILD-TYPE" 
      TCGA-49-4505       TCGA-49-4506       TCGA-49-4507       TCGA-49-4510 
"FTSJD1 WILD-TYPE" "FTSJD1 WILD-TYPE" "FTSJD1 WILD-TYPE" "FTSJD1 WILD-TYPE" 
      TCGA-49-4512       TCGA-49-4514       TCGA-49-6742       TCGA-49-6743 
"FTSJD1 WILD-TYPE" "FTSJD1 WILD-TYPE" "FTSJD1 WILD-TYPE" "FTSJD1 WILD-TYPE" 
      TCGA-49-6744       TCGA-49-6745       TCGA-50-5044       TCGA-50-5045 
"FTSJD1 WILD-TYPE" "FTSJD1 WILD-TYPE" "FTSJD1 WILD-TYPE" "FTSJD1 WILD-TYPE" 
      TCGA-50-5049       TCGA-50-5051       TCGA-50-5055       TCGA-50-5066 
"FTSJD1 WILD-TYPE" "FTSJD1 WILD-TYPE" "FTSJD1 WILD-TYPE" "FTSJD1 WILD-TYPE" 
      TCGA-50-5068       TCGA-50-5072       TCGA-50-5930       TCGA-50-5931 
"FTSJD1 WILD-TYPE" "FTSJD1 WILD-TYPE" "FTSJD1 WILD-TYPE" "FTSJD1 WILD-TYPE" 
      TCGA-50-5932       TCGA-50-5933       TCGA-50-5935       TCGA-50-5936 
"FTSJD1 WILD-TYPE" "FTSJD1 WILD-TYPE" "FTSJD1 WILD-TYPE" "FTSJD1 WILD-TYPE" 
      TCGA-50-5939       TCGA-50-5941       TCGA-50-5942       TCGA-50-5944 
"FTSJD1 WILD-TYPE" "FTSJD1 WILD-TYPE" "FTSJD1 WILD-TYPE" "FTSJD1 WILD-TYPE" 
      TCGA-50-5946       TCGA-50-6590       TCGA-50-6591       TCGA-50-6592 
"FTSJD1 WILD-TYPE" "FTSJD1 WILD-TYPE" "FTSJD1 WILD-TYPE" "FTSJD1 WILD-TYPE" 
      TCGA-50-6593       TCGA-50-6594       TCGA-50-6595       TCGA-50-6597 
"FTSJD1 WILD-TYPE" "FTSJD1 WILD-TYPE" "FTSJD1 WILD-TYPE" "FTSJD1 WILD-TYPE" 
      TCGA-55-1592       TCGA-55-1594       TCGA-55-1595       TCGA-55-1596 
"FTSJD1 WILD-TYPE" "FTSJD1 WILD-TYPE" "FTSJD1 WILD-TYPE" "FTSJD1 WILD-TYPE" 
      TCGA-55-5899       TCGA-55-6543       TCGA-55-6642       TCGA-55-6712 
"FTSJD1 WILD-TYPE" "FTSJD1 WILD-TYPE" "FTSJD1 WILD-TYPE" "FTSJD1 WILD-TYPE" 
      TCGA-64-1676       TCGA-64-1677       TCGA-64-1678       TCGA-64-1680 
"FTSJD1 WILD-TYPE" "FTSJD1 WILD-TYPE" "FTSJD1 WILD-TYPE" "FTSJD1 WILD-TYPE" 
      TCGA-64-5774       TCGA-64-5775       TCGA-64-5778       TCGA-64-5779 
"FTSJD1 WILD-TYPE" "FTSJD1 WILD-TYPE" "FTSJD1 WILD-TYPE" "FTSJD1 WILD-TYPE" 
      TCGA-64-5781       TCGA-64-5815       TCGA-67-3770       TCGA-67-3771 
"FTSJD1 WILD-TYPE" "FTSJD1 WILD-TYPE" "FTSJD1 WILD-TYPE" "FTSJD1 WILD-TYPE" 
      TCGA-67-3772       TCGA-67-3773       TCGA-67-3774       TCGA-67-6215 
"FTSJD1 WILD-TYPE" "FTSJD1 WILD-TYPE" "FTSJD1 WILD-TYPE" "FTSJD1 WILD-TYPE" 
      TCGA-67-6216       TCGA-67-6217       TCGA-71-6725       TCGA-73-4658 
"FTSJD1 WILD-TYPE" "FTSJD1 WILD-TYPE" "FTSJD1 WILD-TYPE"   "FTSJD1 MUTATED" 
      TCGA-73-4659       TCGA-73-4662       TCGA-73-4666       TCGA-73-4668 
"FTSJD1 WILD-TYPE" "FTSJD1 WILD-TYPE" "FTSJD1 WILD-TYPE" "FTSJD1 WILD-TYPE" 
      TCGA-73-4670       TCGA-73-4675       TCGA-73-4676       TCGA-73-4677 
"FTSJD1 WILD-TYPE" "FTSJD1 WILD-TYPE" "FTSJD1 WILD-TYPE" "FTSJD1 WILD-TYPE" 
      TCGA-91-6828       TCGA-91-6829       TCGA-91-6831       TCGA-91-6835 
"FTSJD1 WILD-TYPE" "FTSJD1 WILD-TYPE" "FTSJD1 WILD-TYPE" "FTSJD1 WILD-TYPE" 
      TCGA-91-6836 
"FTSJD1 WILD-TYPE" 
      TCGA-05-4249       TCGA-05-4250       TCGA-05-4382       TCGA-05-4384 
"FTSJD1 WILD-TYPE" "FTSJD1 WILD-TYPE" "FTSJD1 WILD-TYPE" "FTSJD1 WILD-TYPE" 
      TCGA-05-4390       TCGA-05-4396       TCGA-05-4397       TCGA-05-4398 
"FTSJD1 WILD-TYPE"   "FTSJD1 MUTATED" "FTSJD1 WILD-TYPE" "FTSJD1 WILD-TYPE" 
      TCGA-05-4402       TCGA-05-4405       TCGA-05-4415       TCGA-05-4417 
"FTSJD1 WILD-TYPE" "FTSJD1 WILD-TYPE" "FTSJD1 WILD-TYPE" "FTSJD1 WILD-TYPE" 
      TCGA-05-4418       TCGA-05-4420       TCGA-05-4424       TCGA-05-4426 
"FTSJD1 WILD-TYPE"   "FTSJD1 MUTATED" "FTSJD1 WILD-TYPE" "FTSJD1 WILD-TYPE" 
      TCGA-05-4427       TCGA-05-4430       TCGA-05-4432       TCGA-05-4433 
"FTSJD1 WILD-TYPE" "FTSJD1 WILD-TYPE" "FTSJD1 WILD-TYPE" "FTSJD1 WILD-TYPE" 
      TCGA-05-4434       TCGA-05-5420       TCGA-05-5423       TCGA-05-5425 
"FTSJD1 WILD-TYPE" "FTSJD1 WILD-TYPE" "FTSJD1 WILD-TYPE" "FTSJD1 WILD-TYPE" 
      TCGA-05-5429       TCGA-05-5715       TCGA-35-3615       TCGA-35-4122 
"FTSJD1 WILD-TYPE" "FTSJD1 WILD-TYPE" "FTSJD1 WILD-TYPE" "FTSJD1 WILD-TYPE" 
      TCGA-35-4123       TCGA-35-5375       TCGA-38-4625       TCGA-38-4626 
"FTSJD1 WILD-TYPE" "FTSJD1 WILD-TYPE"   "FTSJD1 MUTATED" "FTSJD1 WILD-TYPE" 
      TCGA-38-4627       TCGA-38-4628       TCGA-38-4629       TCGA-38-4630 
"FTSJD1 WILD-TYPE" "FTSJD1 WILD-TYPE" "FTSJD1 WILD-TYPE" "FTSJD1 WILD-TYPE" 
      TCGA-38-4631       TCGA-38-4632       TCGA-38-6178       TCGA-44-2655 
"FTSJD1 WILD-TYPE" "FTSJD1 WILD-TYPE" "FTSJD1 WILD-TYPE" "FTSJD1 WILD-TYPE" 
      TCGA-44-2656       TCGA-44-2657       TCGA-44-2659       TCGA-44-2661 
"FTSJD1 WILD-TYPE" "FTSJD1 WILD-TYPE" "FTSJD1 WILD-TYPE" "FTSJD1 WILD-TYPE" 
      TCGA-44-2662       TCGA-44-2665       TCGA-44-2666       TCGA-44-2668 
"FTSJD1 WILD-TYPE" "FTSJD1 WILD-TYPE" "FTSJD1 WILD-TYPE" "FTSJD1 WILD-TYPE" 
      TCGA-44-3396       TCGA-44-3398       TCGA-44-3918       TCGA-44-3919 
"FTSJD1 WILD-TYPE"   "FTSJD1 MUTATED" "FTSJD1 WILD-TYPE" "FTSJD1 WILD-TYPE" 
      TCGA-44-4112       TCGA-44-5643       TCGA-44-5645       TCGA-44-6144 
  "FTSJD1 MUTATED" "FTSJD1 WILD-TYPE" "FTSJD1 WILD-TYPE" "FTSJD1 WILD-TYPE" 
      TCGA-44-6145       TCGA-44-6146       TCGA-44-6147       TCGA-44-6148 
"FTSJD1 WILD-TYPE" "FTSJD1 WILD-TYPE" "FTSJD1 WILD-TYPE" "FTSJD1 WILD-TYPE" 
      TCGA-44-6774       TCGA-44-6775       TCGA-44-6776       TCGA-44-6777 
"FTSJD1 WILD-TYPE" "FTSJD1 WILD-TYPE" "FTSJD1 WILD-TYPE" "FTSJD1 WILD-TYPE" 
      TCGA-44-6778       TCGA-44-6779       TCGA-49-4486       TCGA-49-4487 
"FTSJD1 WILD-TYPE" "FTSJD1 WILD-TYPE" "FTSJD1 WILD-TYPE" "FTSJD1 WILD-TYPE" 
      TCGA-49-4488       TCGA-49-4490       TCGA-49-4494       TCGA-49-4501 
"FTSJD1 WILD-TYPE" "FTSJD1 WILD-TYPE" "FTSJD1 WILD-TYPE" "FTSJD1 WILD-TYPE" 
      TCGA-49-4505       TCGA-49-4506       TCGA-49-4507       TCGA-49-4510 
"FTSJD1 WILD-TYPE" "FTSJD1 WILD-TYPE" "FTSJD1 WILD-TYPE" "FTSJD1 WILD-TYPE" 
      TCGA-49-4512       TCGA-49-4514       TCGA-49-6742       TCGA-49-6743 
"FTSJD1 WILD-TYPE" "FTSJD1 WILD-TYPE" "FTSJD1 WILD-TYPE" "FTSJD1 WILD-TYPE" 
      TCGA-49-6744       TCGA-49-6745       TCGA-50-5044       TCGA-50-5045 
"FTSJD1 WILD-TYPE" "FTSJD1 WILD-TYPE" "FTSJD1 WILD-TYPE" "FTSJD1 WILD-TYPE" 
      TCGA-50-5049       TCGA-50-5051       TCGA-50-5055       TCGA-50-5066 
"FTSJD1 WILD-TYPE" "FTSJD1 WILD-TYPE" "FTSJD1 WILD-TYPE" "FTSJD1 WILD-TYPE" 
      TCGA-50-5068       TCGA-50-5072       TCGA-50-5930       TCGA-50-5931 
"FTSJD1 WILD-TYPE" "FTSJD1 WILD-TYPE" "FTSJD1 WILD-TYPE" "FTSJD1 WILD-TYPE" 
      TCGA-50-5932       TCGA-50-5933       TCGA-50-5935       TCGA-50-5936 
"FTSJD1 WILD-TYPE" "FTSJD1 WILD-TYPE" "FTSJD1 WILD-TYPE" "FTSJD1 WILD-TYPE" 
      TCGA-50-5939       TCGA-50-5941       TCGA-50-5942       TCGA-50-5944 
"FTSJD1 WILD-TYPE" "FTSJD1 WILD-TYPE" "FTSJD1 WILD-TYPE" "FTSJD1 WILD-TYPE" 
      TCGA-50-5946       TCGA-50-6590       TCGA-50-6591       TCGA-50-6592 
"FTSJD1 WILD-TYPE" "FTSJD1 WILD-TYPE" "FTSJD1 WILD-TYPE" "FTSJD1 WILD-TYPE" 
      TCGA-50-6593       TCGA-50-6594       TCGA-50-6595       TCGA-50-6597 
"FTSJD1 WILD-TYPE" "FTSJD1 WILD-TYPE" "FTSJD1 WILD-TYPE" "FTSJD1 WILD-TYPE" 
      TCGA-55-1592       TCGA-55-1594       TCGA-55-1595       TCGA-55-1596 
"FTSJD1 WILD-TYPE" "FTSJD1 WILD-TYPE" "FTSJD1 WILD-TYPE" "FTSJD1 WILD-TYPE" 
      TCGA-55-5899       TCGA-55-6543       TCGA-55-6642       TCGA-55-6712 
"FTSJD1 WILD-TYPE" "FTSJD1 WILD-TYPE" "FTSJD1 WILD-TYPE" "FTSJD1 WILD-TYPE" 
      TCGA-64-1676       TCGA-64-1677       TCGA-64-1678       TCGA-64-1680 
"FTSJD1 WILD-TYPE" "FTSJD1 WILD-TYPE" "FTSJD1 WILD-TYPE" "FTSJD1 WILD-TYPE" 
      TCGA-64-5774       TCGA-64-5775       TCGA-64-5778       TCGA-64-5779 
"FTSJD1 WILD-TYPE" "FTSJD1 WILD-TYPE" "FTSJD1 WILD-TYPE" "FTSJD1 WILD-TYPE" 
      TCGA-64-5781       TCGA-64-5815       TCGA-67-3770       TCGA-67-3771 
"FTSJD1 WILD-TYPE" "FTSJD1 WILD-TYPE" "FTSJD1 WILD-TYPE" "FTSJD1 WILD-TYPE" 
      TCGA-67-3772       TCGA-67-3773       TCGA-67-3774       TCGA-67-6215 
"FTSJD1 WILD-TYPE" "FTSJD1 WILD-TYPE" "FTSJD1 WILD-TYPE" "FTSJD1 WILD-TYPE" 
      TCGA-67-6216       TCGA-67-6217       TCGA-71-6725       TCGA-73-4658 
"FTSJD1 WILD-TYPE" "FTSJD1 WILD-TYPE" "FTSJD1 WILD-TYPE"   "FTSJD1 MUTATED" 
      TCGA-73-4659       TCGA-73-4662       TCGA-73-4666       TCGA-73-4668 
"FTSJD1 WILD-TYPE" "FTSJD1 WILD-TYPE" "FTSJD1 WILD-TYPE" "FTSJD1 WILD-TYPE" 
      TCGA-73-4670       TCGA-73-4675       TCGA-73-4676       TCGA-73-4677 
"FTSJD1 WILD-TYPE" "FTSJD1 WILD-TYPE" "FTSJD1 WILD-TYPE" "FTSJD1 WILD-TYPE" 
      TCGA-91-6828       TCGA-91-6829       TCGA-91-6831       TCGA-91-6835 
"FTSJD1 WILD-TYPE" "FTSJD1 WILD-TYPE" "FTSJD1 WILD-TYPE" "FTSJD1 WILD-TYPE" 
      TCGA-91-6836 
"FTSJD1 WILD-TYPE" 
[1] "hr=" "1.5"
D222V2, continuous
D222V3, binary
[1] "tbl2"
                  cls
clus               [,1] [,2]
  FTSJD1 MUTATED      4    2
  FTSJD1 WILD-TYPE   89   77
        clus
vv       FTSJD1 MUTATED FTSJD1 WILD-TYPE
  FEMALE              4               89
  MALE                2               77
D222V4, continuous
D222V5, multiclass
D222V6, multiclass
    clus
vv   FTSJD1 MUTATED FTSJD1 WILD-TYPE
  T1              1               40
  T2              4              104
  T3              0               14
  T4              1                7
D222V7, multiclass
       clus
vv      FTSJD1 MUTATED FTSJD1 WILD-TYPE
  N0                 5               90
  N1                 1               36
  N2+N3              0               35
D222V8, multiclass
    clus
vv   FTSJD1 MUTATED FTSJD1 WILD-TYPE
  M0              6              131
  M1              0                9
  MX              0               22
D222V9, multiclass
     clus
vv    FTSJD1 MUTATED FTSJD1 WILD-TYPE
  I                5               83
  II               0               33
  III              1               38
  IV               0                9
D222V10, binary
[1] "tbl2"
                  cls
clus               [,1] [,2]
  FTSJD1 MUTATED      0    6
  FTSJD1 WILD-TYPE   16  150
     clus
vv    FTSJD1 MUTATED FTSJD1 WILD-TYPE
  NO               0               16
  YES              6              150
D222V11, continuous
D222V12, continuous
D222V13, multiclass
                                             clus
vv                                            FTSJD1 MUTATED FTSJD1 WILD-TYPE
  CURRENT REFORMED SMOKER FOR < OR = 15 YEARS              1               61
  CURRENT REFORMED SMOKER FOR > 15 YEARS                   3               43
  CURRENT SMOKER                                           2               26
  LIFELONG NON-SMOKER                                      0               24
D222V14, continuous

Clustering(223) Variable = PTN MUTATION ANALYSIS
D223V1, survival
               sevent
clus2            0  1
  PTN MUTATED    3  0
  PTN WILD-TYPE 96 50
  PTN MUTATED PTN WILD-TYPE 
            3           146 
  PTN MUTATED PTN WILD-TYPE 
            0            50 
$`PTN MUTATED`
TCGA-35-4122 TCGA-44-3919 TCGA-91-6836 
        7.36         6.21         0.36 

$`PTN WILD-TYPE`
TCGA-05-4249 TCGA-05-4250 TCGA-05-4382 TCGA-05-4384 TCGA-05-4390 TCGA-05-4396 
       38.07         3.98        19.92        14.01        37.02         9.96 
TCGA-05-4397 TCGA-05-4398 TCGA-05-4402 TCGA-05-4405 TCGA-05-4415 TCGA-05-4417 
       24.03        47.05         8.02        20.05         2.96        14.93 
TCGA-05-4418 TCGA-05-4420 TCGA-05-4424 TCGA-05-4426 TCGA-05-4427 TCGA-05-4430 
        8.98        29.95        30.02        26.01        26.01        25.02 
TCGA-05-4432 TCGA-05-4433 TCGA-05-4434 TCGA-05-5420 TCGA-05-5423 TCGA-05-5425 
       25.02        24.00        15.02         1.02         4.96         2.96 
TCGA-05-5429 TCGA-05-5715 TCGA-35-3615 TCGA-35-4123 TCGA-35-5375 TCGA-38-4625 
        0.99         2.04         0.46         5.95         8.68        47.61 
TCGA-38-4626 TCGA-38-4627 TCGA-38-4628 TCGA-38-4629 TCGA-38-4630 TCGA-38-4631 
       85.32        37.71        49.02        28.37        35.28        11.64 
TCGA-38-4632 TCGA-38-6178 TCGA-44-2655 TCGA-44-2656 TCGA-44-2657 TCGA-44-2659 
       44.61         5.19        18.87        19.10        13.15        17.39 
TCGA-44-2661 TCGA-44-2662 TCGA-44-2665 TCGA-44-2666 TCGA-44-2668 TCGA-44-3396 
        3.39        15.78        13.15         3.19         8.09        10.22 
TCGA-44-3398 TCGA-44-3918 TCGA-44-4112 TCGA-44-5643 TCGA-44-5645 TCGA-44-6144 
        8.32         6.44         4.60         3.48         6.84         0.30 
TCGA-44-6145 TCGA-44-6146 TCGA-44-6147 TCGA-44-6148 TCGA-44-6774 TCGA-44-6775 
        3.35         9.93         7.76         3.12         5.42         2.70 
TCGA-44-6776 TCGA-44-6777 TCGA-44-6778 TCGA-44-6779 TCGA-49-4486 TCGA-49-4487 
       63.72        32.45        36.49        16.41        76.21        28.11 
TCGA-49-4488 TCGA-49-4490 TCGA-49-4494 TCGA-49-4501 TCGA-49-4505 TCGA-49-4506 
       28.57        12.66        35.54        46.72        14.07        32.84 
TCGA-49-4507 TCGA-49-4510 TCGA-49-4512 TCGA-49-4514 TCGA-49-6742 TCGA-49-6743 
        8.81        29.46        29.75        43.20        15.02        12.13 
TCGA-49-6744 TCGA-49-6745 TCGA-50-5044 TCGA-50-5045 TCGA-50-5049 TCGA-50-5051 
       12.99         4.93        20.48        71.47        48.82        14.96 
TCGA-50-5055 TCGA-50-5066 TCGA-50-5068 TCGA-50-5072 TCGA-50-5930 TCGA-50-5931 
       25.81         9.76        49.28         8.05         9.27         8.78 
TCGA-50-5932 TCGA-50-5933 TCGA-50-5935 TCGA-50-5936 TCGA-50-5939 TCGA-50-5941 
       35.87        77.88        21.47         8.45        15.12         9.37 
TCGA-50-5942 TCGA-50-5944 TCGA-50-5946 TCGA-50-6590 TCGA-50-6591 TCGA-50-6592 
        4.44        12.26        11.47        42.31         3.88        25.51 
TCGA-50-6593 TCGA-50-6594 TCGA-50-6595 TCGA-50-6597 TCGA-55-1592 TCGA-55-1594 
       11.05        12.16         6.21        33.37        23.05        38.73 
TCGA-55-1595 TCGA-55-1596 TCGA-55-5899 TCGA-55-6543 TCGA-55-6642 TCGA-55-6712 
       48.62        45.17         2.86         0.07        32.61         0.79 
TCGA-64-1676 TCGA-64-1677 TCGA-64-1678 TCGA-64-1680 TCGA-64-5774 TCGA-64-5775 
       56.81        20.65        39.09        37.02        83.84         0.10 
TCGA-64-5778 TCGA-64-5779 TCGA-64-5781 TCGA-64-5815 TCGA-67-3770 TCGA-67-3771 
       30.44        16.67        39.52         7.33         0.99         1.97 
TCGA-67-3772 TCGA-67-3773 TCGA-67-3774 TCGA-67-6215 TCGA-67-6216 TCGA-67-6217 
        0.59         2.04         0.59         0.89         0.69        13.87 
TCGA-71-6725 TCGA-73-4658 TCGA-73-4659 TCGA-73-4662 TCGA-73-4666 TCGA-73-4668 
        2.01        52.57        23.38        29.95        20.28        15.35 
TCGA-73-4670 TCGA-73-4675 TCGA-73-4676 TCGA-73-4677 TCGA-91-6828 TCGA-91-6829 
        0.46         1.32         4.01         1.25         1.22        41.33 
TCGA-91-6831 TCGA-91-6835 
        1.28         1.15 

  PTN MUTATED PTN WILD-TYPE 
         0.36          0.07 
  PTN MUTATED PTN WILD-TYPE 
         7.36         85.32 
  PTN MUTATED PTN WILD-TYPE 
         6.21         14.04 
[1] "0.4 - 7.4 (6.2)"   "0.1 - 85.3 (14.0)"
   TCGA-05-4249    TCGA-05-4250    TCGA-05-4382    TCGA-05-4384    TCGA-05-4390 
"PTN WILD-TYPE" "PTN WILD-TYPE" "PTN WILD-TYPE" "PTN WILD-TYPE" "PTN WILD-TYPE" 
   TCGA-05-4396    TCGA-05-4397    TCGA-05-4398    TCGA-05-4402    TCGA-05-4405 
"PTN WILD-TYPE" "PTN WILD-TYPE" "PTN WILD-TYPE" "PTN WILD-TYPE" "PTN WILD-TYPE" 
   TCGA-05-4415    TCGA-05-4417    TCGA-05-4418    TCGA-05-4420    TCGA-05-4424 
"PTN WILD-TYPE" "PTN WILD-TYPE" "PTN WILD-TYPE" "PTN WILD-TYPE" "PTN WILD-TYPE" 
   TCGA-05-4426    TCGA-05-4427    TCGA-05-4430    TCGA-05-4432    TCGA-05-4433 
"PTN WILD-TYPE" "PTN WILD-TYPE" "PTN WILD-TYPE" "PTN WILD-TYPE" "PTN WILD-TYPE" 
   TCGA-05-4434    TCGA-05-5420    TCGA-05-5423    TCGA-05-5425    TCGA-05-5429 
"PTN WILD-TYPE" "PTN WILD-TYPE" "PTN WILD-TYPE" "PTN WILD-TYPE" "PTN WILD-TYPE" 
   TCGA-05-5715    TCGA-35-3615    TCGA-35-4122    TCGA-35-4123    TCGA-35-5375 
"PTN WILD-TYPE" "PTN WILD-TYPE"   "PTN MUTATED" "PTN WILD-TYPE" "PTN WILD-TYPE" 
   TCGA-38-4625    TCGA-38-4626    TCGA-38-4627    TCGA-38-4628    TCGA-38-4629 
"PTN WILD-TYPE" "PTN WILD-TYPE" "PTN WILD-TYPE" "PTN WILD-TYPE" "PTN WILD-TYPE" 
   TCGA-38-4630    TCGA-38-4631    TCGA-38-4632    TCGA-38-6178    TCGA-44-2655 
"PTN WILD-TYPE" "PTN WILD-TYPE" "PTN WILD-TYPE" "PTN WILD-TYPE" "PTN WILD-TYPE" 
   TCGA-44-2656    TCGA-44-2657    TCGA-44-2659    TCGA-44-2661    TCGA-44-2662 
"PTN WILD-TYPE" "PTN WILD-TYPE" "PTN WILD-TYPE" "PTN WILD-TYPE" "PTN WILD-TYPE" 
   TCGA-44-2665    TCGA-44-2666    TCGA-44-2668    TCGA-44-3396    TCGA-44-3398 
"PTN WILD-TYPE" "PTN WILD-TYPE" "PTN WILD-TYPE" "PTN WILD-TYPE" "PTN WILD-TYPE" 
   TCGA-44-3918    TCGA-44-3919    TCGA-44-4112    TCGA-44-5643    TCGA-44-5645 
"PTN WILD-TYPE"   "PTN MUTATED" "PTN WILD-TYPE" "PTN WILD-TYPE" "PTN WILD-TYPE" 
   TCGA-44-6144    TCGA-44-6145    TCGA-44-6146    TCGA-44-6147    TCGA-44-6148 
"PTN WILD-TYPE" "PTN WILD-TYPE" "PTN WILD-TYPE" "PTN WILD-TYPE" "PTN WILD-TYPE" 
   TCGA-44-6774    TCGA-44-6775    TCGA-44-6776    TCGA-44-6777    TCGA-44-6778 
"PTN WILD-TYPE" "PTN WILD-TYPE" "PTN WILD-TYPE" "PTN WILD-TYPE" "PTN WILD-TYPE" 
   TCGA-44-6779    TCGA-49-4486    TCGA-49-4487    TCGA-49-4488    TCGA-49-4490 
"PTN WILD-TYPE" "PTN WILD-TYPE" "PTN WILD-TYPE" "PTN WILD-TYPE" "PTN WILD-TYPE" 
   TCGA-49-4494    TCGA-49-4501    TCGA-49-4505    TCGA-49-4506    TCGA-49-4507 
"PTN WILD-TYPE" "PTN WILD-TYPE" "PTN WILD-TYPE" "PTN WILD-TYPE" "PTN WILD-TYPE" 
   TCGA-49-4510    TCGA-49-4512    TCGA-49-4514    TCGA-49-6742    TCGA-49-6743 
"PTN WILD-TYPE" "PTN WILD-TYPE" "PTN WILD-TYPE" "PTN WILD-TYPE" "PTN WILD-TYPE" 
   TCGA-49-6744    TCGA-49-6745    TCGA-50-5044    TCGA-50-5045    TCGA-50-5049 
"PTN WILD-TYPE" "PTN WILD-TYPE" "PTN WILD-TYPE" "PTN WILD-TYPE" "PTN WILD-TYPE" 
   TCGA-50-5051    TCGA-50-5055    TCGA-50-5066    TCGA-50-5068    TCGA-50-5072 
"PTN WILD-TYPE" "PTN WILD-TYPE" "PTN WILD-TYPE" "PTN WILD-TYPE" "PTN WILD-TYPE" 
   TCGA-50-5930    TCGA-50-5931    TCGA-50-5932    TCGA-50-5933    TCGA-50-5935 
"PTN WILD-TYPE" "PTN WILD-TYPE" "PTN WILD-TYPE" "PTN WILD-TYPE" "PTN WILD-TYPE" 
   TCGA-50-5936    TCGA-50-5939    TCGA-50-5941    TCGA-50-5942    TCGA-50-5944 
"PTN WILD-TYPE" "PTN WILD-TYPE" "PTN WILD-TYPE" "PTN WILD-TYPE" "PTN WILD-TYPE" 
   TCGA-50-5946    TCGA-50-6590    TCGA-50-6591    TCGA-50-6592    TCGA-50-6593 
"PTN WILD-TYPE" "PTN WILD-TYPE" "PTN WILD-TYPE" "PTN WILD-TYPE" "PTN WILD-TYPE" 
   TCGA-50-6594    TCGA-50-6595    TCGA-50-6597    TCGA-55-1592    TCGA-55-1594 
"PTN WILD-TYPE" "PTN WILD-TYPE" "PTN WILD-TYPE" "PTN WILD-TYPE" "PTN WILD-TYPE" 
   TCGA-55-1595    TCGA-55-1596    TCGA-55-5899    TCGA-55-6543    TCGA-55-6642 
"PTN WILD-TYPE" "PTN WILD-TYPE" "PTN WILD-TYPE" "PTN WILD-TYPE" "PTN WILD-TYPE" 
   TCGA-55-6712    TCGA-64-1676    TCGA-64-1677    TCGA-64-1678    TCGA-64-1680 
"PTN WILD-TYPE" "PTN WILD-TYPE" "PTN WILD-TYPE" "PTN WILD-TYPE" "PTN WILD-TYPE" 
   TCGA-64-5774    TCGA-64-5775    TCGA-64-5778    TCGA-64-5779    TCGA-64-5781 
"PTN WILD-TYPE" "PTN WILD-TYPE" "PTN WILD-TYPE" "PTN WILD-TYPE" "PTN WILD-TYPE" 
   TCGA-64-5815    TCGA-67-3770    TCGA-67-3771    TCGA-67-3772    TCGA-67-3773 
"PTN WILD-TYPE" "PTN WILD-TYPE" "PTN WILD-TYPE" "PTN WILD-TYPE" "PTN WILD-TYPE" 
   TCGA-67-3774    TCGA-67-6215    TCGA-67-6216    TCGA-67-6217    TCGA-71-6725 
"PTN WILD-TYPE" "PTN WILD-TYPE" "PTN WILD-TYPE" "PTN WILD-TYPE" "PTN WILD-TYPE" 
   TCGA-73-4658    TCGA-73-4659    TCGA-73-4662    TCGA-73-4666    TCGA-73-4668 
"PTN WILD-TYPE" "PTN WILD-TYPE" "PTN WILD-TYPE" "PTN WILD-TYPE" "PTN WILD-TYPE" 
   TCGA-73-4670    TCGA-73-4675    TCGA-73-4676    TCGA-73-4677    TCGA-91-6828 
"PTN WILD-TYPE" "PTN WILD-TYPE" "PTN WILD-TYPE" "PTN WILD-TYPE" "PTN WILD-TYPE" 
   TCGA-91-6829    TCGA-91-6831    TCGA-91-6835    TCGA-91-6836 
"PTN WILD-TYPE" "PTN WILD-TYPE" "PTN WILD-TYPE"   "PTN MUTATED" 
   TCGA-05-4249    TCGA-05-4250    TCGA-05-4382    TCGA-05-4384    TCGA-05-4390 
"PTN WILD-TYPE" "PTN WILD-TYPE" "PTN WILD-TYPE" "PTN WILD-TYPE" "PTN WILD-TYPE" 
   TCGA-05-4396    TCGA-05-4397    TCGA-05-4398    TCGA-05-4402    TCGA-05-4405 
"PTN WILD-TYPE" "PTN WILD-TYPE" "PTN WILD-TYPE" "PTN WILD-TYPE" "PTN WILD-TYPE" 
   TCGA-05-4415    TCGA-05-4417    TCGA-05-4418    TCGA-05-4420    TCGA-05-4424 
"PTN WILD-TYPE" "PTN WILD-TYPE" "PTN WILD-TYPE" "PTN WILD-TYPE" "PTN WILD-TYPE" 
   TCGA-05-4426    TCGA-05-4427    TCGA-05-4430    TCGA-05-4432    TCGA-05-4433 
"PTN WILD-TYPE" "PTN WILD-TYPE" "PTN WILD-TYPE" "PTN WILD-TYPE" "PTN WILD-TYPE" 
   TCGA-05-4434    TCGA-05-5420    TCGA-05-5423    TCGA-05-5425    TCGA-05-5429 
"PTN WILD-TYPE" "PTN WILD-TYPE" "PTN WILD-TYPE" "PTN WILD-TYPE" "PTN WILD-TYPE" 
   TCGA-05-5715    TCGA-35-3615    TCGA-35-4122    TCGA-35-4123    TCGA-35-5375 
"PTN WILD-TYPE" "PTN WILD-TYPE"   "PTN MUTATED" "PTN WILD-TYPE" "PTN WILD-TYPE" 
   TCGA-38-4625    TCGA-38-4626    TCGA-38-4627    TCGA-38-4628    TCGA-38-4629 
"PTN WILD-TYPE" "PTN WILD-TYPE" "PTN WILD-TYPE" "PTN WILD-TYPE" "PTN WILD-TYPE" 
   TCGA-38-4630    TCGA-38-4631    TCGA-38-4632    TCGA-38-6178    TCGA-44-2655 
"PTN WILD-TYPE" "PTN WILD-TYPE" "PTN WILD-TYPE" "PTN WILD-TYPE" "PTN WILD-TYPE" 
   TCGA-44-2656    TCGA-44-2657    TCGA-44-2659    TCGA-44-2661    TCGA-44-2662 
"PTN WILD-TYPE" "PTN WILD-TYPE" "PTN WILD-TYPE" "PTN WILD-TYPE" "PTN WILD-TYPE" 
   TCGA-44-2665    TCGA-44-2666    TCGA-44-2668    TCGA-44-3396    TCGA-44-3398 
"PTN WILD-TYPE" "PTN WILD-TYPE" "PTN WILD-TYPE" "PTN WILD-TYPE" "PTN WILD-TYPE" 
   TCGA-44-3918    TCGA-44-3919    TCGA-44-4112    TCGA-44-5643    TCGA-44-5645 
"PTN WILD-TYPE"   "PTN MUTATED" "PTN WILD-TYPE" "PTN WILD-TYPE" "PTN WILD-TYPE" 
   TCGA-44-6144    TCGA-44-6145    TCGA-44-6146    TCGA-44-6147    TCGA-44-6148 
"PTN WILD-TYPE" "PTN WILD-TYPE" "PTN WILD-TYPE" "PTN WILD-TYPE" "PTN WILD-TYPE" 
   TCGA-44-6774    TCGA-44-6775    TCGA-44-6776    TCGA-44-6777    TCGA-44-6778 
"PTN WILD-TYPE" "PTN WILD-TYPE" "PTN WILD-TYPE" "PTN WILD-TYPE" "PTN WILD-TYPE" 
   TCGA-44-6779    TCGA-49-4486    TCGA-49-4487    TCGA-49-4488    TCGA-49-4490 
"PTN WILD-TYPE" "PTN WILD-TYPE" "PTN WILD-TYPE" "PTN WILD-TYPE" "PTN WILD-TYPE" 
   TCGA-49-4494    TCGA-49-4501    TCGA-49-4505    TCGA-49-4506    TCGA-49-4507 
"PTN WILD-TYPE" "PTN WILD-TYPE" "PTN WILD-TYPE" "PTN WILD-TYPE" "PTN WILD-TYPE" 
   TCGA-49-4510    TCGA-49-4512    TCGA-49-4514    TCGA-49-6742    TCGA-49-6743 
"PTN WILD-TYPE" "PTN WILD-TYPE" "PTN WILD-TYPE" "PTN WILD-TYPE" "PTN WILD-TYPE" 
   TCGA-49-6744    TCGA-49-6745    TCGA-50-5044    TCGA-50-5045    TCGA-50-5049 
"PTN WILD-TYPE" "PTN WILD-TYPE" "PTN WILD-TYPE" "PTN WILD-TYPE" "PTN WILD-TYPE" 
   TCGA-50-5051    TCGA-50-5055    TCGA-50-5066    TCGA-50-5068    TCGA-50-5072 
"PTN WILD-TYPE" "PTN WILD-TYPE" "PTN WILD-TYPE" "PTN WILD-TYPE" "PTN WILD-TYPE" 
   TCGA-50-5930    TCGA-50-5931    TCGA-50-5932    TCGA-50-5933    TCGA-50-5935 
"PTN WILD-TYPE" "PTN WILD-TYPE" "PTN WILD-TYPE" "PTN WILD-TYPE" "PTN WILD-TYPE" 
   TCGA-50-5936    TCGA-50-5939    TCGA-50-5941    TCGA-50-5942    TCGA-50-5944 
"PTN WILD-TYPE" "PTN WILD-TYPE" "PTN WILD-TYPE" "PTN WILD-TYPE" "PTN WILD-TYPE" 
   TCGA-50-5946    TCGA-50-6590    TCGA-50-6591    TCGA-50-6592    TCGA-50-6593 
"PTN WILD-TYPE" "PTN WILD-TYPE" "PTN WILD-TYPE" "PTN WILD-TYPE" "PTN WILD-TYPE" 
   TCGA-50-6594    TCGA-50-6595    TCGA-50-6597    TCGA-55-1592    TCGA-55-1594 
"PTN WILD-TYPE" "PTN WILD-TYPE" "PTN WILD-TYPE" "PTN WILD-TYPE" "PTN WILD-TYPE" 
   TCGA-55-1595    TCGA-55-1596    TCGA-55-5899    TCGA-55-6543    TCGA-55-6642 
"PTN WILD-TYPE" "PTN WILD-TYPE" "PTN WILD-TYPE" "PTN WILD-TYPE" "PTN WILD-TYPE" 
   TCGA-55-6712    TCGA-64-1676    TCGA-64-1677    TCGA-64-1678    TCGA-64-1680 
"PTN WILD-TYPE" "PTN WILD-TYPE" "PTN WILD-TYPE" "PTN WILD-TYPE" "PTN WILD-TYPE" 
   TCGA-64-5774    TCGA-64-5775    TCGA-64-5778    TCGA-64-5779    TCGA-64-5781 
"PTN WILD-TYPE" "PTN WILD-TYPE" "PTN WILD-TYPE" "PTN WILD-TYPE" "PTN WILD-TYPE" 
   TCGA-64-5815    TCGA-67-3770    TCGA-67-3771    TCGA-67-3772    TCGA-67-3773 
"PTN WILD-TYPE" "PTN WILD-TYPE" "PTN WILD-TYPE" "PTN WILD-TYPE" "PTN WILD-TYPE" 
   TCGA-67-3774    TCGA-67-6215    TCGA-67-6216    TCGA-67-6217    TCGA-71-6725 
"PTN WILD-TYPE" "PTN WILD-TYPE" "PTN WILD-TYPE" "PTN WILD-TYPE" "PTN WILD-TYPE" 
   TCGA-73-4658    TCGA-73-4659    TCGA-73-4662    TCGA-73-4666    TCGA-73-4668 
"PTN WILD-TYPE" "PTN WILD-TYPE" "PTN WILD-TYPE" "PTN WILD-TYPE" "PTN WILD-TYPE" 
   TCGA-73-4670    TCGA-73-4675    TCGA-73-4676    TCGA-73-4677    TCGA-91-6828 
"PTN WILD-TYPE" "PTN WILD-TYPE" "PTN WILD-TYPE" "PTN WILD-TYPE" "PTN WILD-TYPE" 
   TCGA-91-6829    TCGA-91-6831    TCGA-91-6835    TCGA-91-6836 
"PTN WILD-TYPE" "PTN WILD-TYPE" "PTN WILD-TYPE"   "PTN MUTATED" 
   TCGA-05-4249    TCGA-05-4250    TCGA-05-4382    TCGA-05-4384    TCGA-05-4390 
"PTN WILD-TYPE" "PTN WILD-TYPE" "PTN WILD-TYPE" "PTN WILD-TYPE" "PTN WILD-TYPE" 
   TCGA-05-4396    TCGA-05-4397    TCGA-05-4398    TCGA-05-4402    TCGA-05-4405 
"PTN WILD-TYPE" "PTN WILD-TYPE" "PTN WILD-TYPE" "PTN WILD-TYPE" "PTN WILD-TYPE" 
   TCGA-05-4415    TCGA-05-4417    TCGA-05-4418    TCGA-05-4420    TCGA-05-4424 
"PTN WILD-TYPE" "PTN WILD-TYPE" "PTN WILD-TYPE" "PTN WILD-TYPE" "PTN WILD-TYPE" 
   TCGA-05-4426    TCGA-05-4427    TCGA-05-4430    TCGA-05-4432    TCGA-05-4433 
"PTN WILD-TYPE" "PTN WILD-TYPE" "PTN WILD-TYPE" "PTN WILD-TYPE" "PTN WILD-TYPE" 
   TCGA-05-4434    TCGA-05-5420    TCGA-05-5423    TCGA-05-5425    TCGA-05-5429 
"PTN WILD-TYPE" "PTN WILD-TYPE" "PTN WILD-TYPE" "PTN WILD-TYPE" "PTN WILD-TYPE" 
   TCGA-05-5715    TCGA-35-3615    TCGA-35-4122    TCGA-35-4123    TCGA-35-5375 
"PTN WILD-TYPE" "PTN WILD-TYPE"   "PTN MUTATED" "PTN WILD-TYPE" "PTN WILD-TYPE" 
   TCGA-38-4625    TCGA-38-4626    TCGA-38-4627    TCGA-38-4628    TCGA-38-4629 
"PTN WILD-TYPE" "PTN WILD-TYPE" "PTN WILD-TYPE" "PTN WILD-TYPE" "PTN WILD-TYPE" 
   TCGA-38-4630    TCGA-38-4631    TCGA-38-4632    TCGA-38-6178    TCGA-44-2655 
"PTN WILD-TYPE" "PTN WILD-TYPE" "PTN WILD-TYPE" "PTN WILD-TYPE" "PTN WILD-TYPE" 
   TCGA-44-2656    TCGA-44-2657    TCGA-44-2659    TCGA-44-2661    TCGA-44-2662 
"PTN WILD-TYPE" "PTN WILD-TYPE" "PTN WILD-TYPE" "PTN WILD-TYPE" "PTN WILD-TYPE" 
   TCGA-44-2665    TCGA-44-2666    TCGA-44-2668    TCGA-44-3396    TCGA-44-3398 
"PTN WILD-TYPE" "PTN WILD-TYPE" "PTN WILD-TYPE" "PTN WILD-TYPE" "PTN WILD-TYPE" 
   TCGA-44-3918    TCGA-44-3919    TCGA-44-4112    TCGA-44-5643    TCGA-44-5645 
"PTN WILD-TYPE"   "PTN MUTATED" "PTN WILD-TYPE" "PTN WILD-TYPE" "PTN WILD-TYPE" 
   TCGA-44-6144    TCGA-44-6145    TCGA-44-6146    TCGA-44-6147    TCGA-44-6148 
"PTN WILD-TYPE" "PTN WILD-TYPE" "PTN WILD-TYPE" "PTN WILD-TYPE" "PTN WILD-TYPE" 
   TCGA-44-6774    TCGA-44-6775    TCGA-44-6776    TCGA-44-6777    TCGA-44-6778 
"PTN WILD-TYPE" "PTN WILD-TYPE" "PTN WILD-TYPE" "PTN WILD-TYPE" "PTN WILD-TYPE" 
   TCGA-44-6779    TCGA-49-4486    TCGA-49-4487    TCGA-49-4488    TCGA-49-4490 
"PTN WILD-TYPE" "PTN WILD-TYPE" "PTN WILD-TYPE" "PTN WILD-TYPE" "PTN WILD-TYPE" 
   TCGA-49-4494    TCGA-49-4501    TCGA-49-4505    TCGA-49-4506    TCGA-49-4507 
"PTN WILD-TYPE" "PTN WILD-TYPE" "PTN WILD-TYPE" "PTN WILD-TYPE" "PTN WILD-TYPE" 
   TCGA-49-4510    TCGA-49-4512    TCGA-49-4514    TCGA-49-6742    TCGA-49-6743 
"PTN WILD-TYPE" "PTN WILD-TYPE" "PTN WILD-TYPE" "PTN WILD-TYPE" "PTN WILD-TYPE" 
   TCGA-49-6744    TCGA-49-6745    TCGA-50-5044    TCGA-50-5045    TCGA-50-5049 
"PTN WILD-TYPE" "PTN WILD-TYPE" "PTN WILD-TYPE" "PTN WILD-TYPE" "PTN WILD-TYPE" 
   TCGA-50-5051    TCGA-50-5055    TCGA-50-5066    TCGA-50-5068    TCGA-50-5072 
"PTN WILD-TYPE" "PTN WILD-TYPE" "PTN WILD-TYPE" "PTN WILD-TYPE" "PTN WILD-TYPE" 
   TCGA-50-5930    TCGA-50-5931    TCGA-50-5932    TCGA-50-5933    TCGA-50-5935 
"PTN WILD-TYPE" "PTN WILD-TYPE" "PTN WILD-TYPE" "PTN WILD-TYPE" "PTN WILD-TYPE" 
   TCGA-50-5936    TCGA-50-5939    TCGA-50-5941    TCGA-50-5942    TCGA-50-5944 
"PTN WILD-TYPE" "PTN WILD-TYPE" "PTN WILD-TYPE" "PTN WILD-TYPE" "PTN WILD-TYPE" 
   TCGA-50-5946    TCGA-50-6590    TCGA-50-6591    TCGA-50-6592    TCGA-50-6593 
"PTN WILD-TYPE" "PTN WILD-TYPE" "PTN WILD-TYPE" "PTN WILD-TYPE" "PTN WILD-TYPE" 
   TCGA-50-6594    TCGA-50-6595    TCGA-50-6597    TCGA-55-1592    TCGA-55-1594 
"PTN WILD-TYPE" "PTN WILD-TYPE" "PTN WILD-TYPE" "PTN WILD-TYPE" "PTN WILD-TYPE" 
   TCGA-55-1595    TCGA-55-1596    TCGA-55-5899    TCGA-55-6543    TCGA-55-6642 
"PTN WILD-TYPE" "PTN WILD-TYPE" "PTN WILD-TYPE" "PTN WILD-TYPE" "PTN WILD-TYPE" 
   TCGA-55-6712    TCGA-64-1676    TCGA-64-1677    TCGA-64-1678    TCGA-64-1680 
"PTN WILD-TYPE" "PTN WILD-TYPE" "PTN WILD-TYPE" "PTN WILD-TYPE" "PTN WILD-TYPE" 
   TCGA-64-5774    TCGA-64-5775    TCGA-64-5778    TCGA-64-5779    TCGA-64-5781 
"PTN WILD-TYPE" "PTN WILD-TYPE" "PTN WILD-TYPE" "PTN WILD-TYPE" "PTN WILD-TYPE" 
   TCGA-64-5815    TCGA-67-3770    TCGA-67-3771    TCGA-67-3772    TCGA-67-3773 
"PTN WILD-TYPE" "PTN WILD-TYPE" "PTN WILD-TYPE" "PTN WILD-TYPE" "PTN WILD-TYPE" 
   TCGA-67-3774    TCGA-67-6215    TCGA-67-6216    TCGA-67-6217    TCGA-71-6725 
"PTN WILD-TYPE" "PTN WILD-TYPE" "PTN WILD-TYPE" "PTN WILD-TYPE" "PTN WILD-TYPE" 
   TCGA-73-4658    TCGA-73-4659    TCGA-73-4662    TCGA-73-4666    TCGA-73-4668 
"PTN WILD-TYPE" "PTN WILD-TYPE" "PTN WILD-TYPE" "PTN WILD-TYPE" "PTN WILD-TYPE" 
   TCGA-73-4670    TCGA-73-4675    TCGA-73-4676    TCGA-73-4677    TCGA-91-6828 
"PTN WILD-TYPE" "PTN WILD-TYPE" "PTN WILD-TYPE" "PTN WILD-TYPE" "PTN WILD-TYPE" 
   TCGA-91-6829    TCGA-91-6831    TCGA-91-6835    TCGA-91-6836 
"PTN WILD-TYPE" "PTN WILD-TYPE" "PTN WILD-TYPE"   "PTN MUTATED" 
[1] "hr="     "1200000"
D223V2, continuous
D223V3, binary
[1] "tbl2"
               cls
clus            [,1] [,2]
  PTN MUTATED      2    1
  PTN WILD-TYPE   91   78
        clus
vv       PTN MUTATED PTN WILD-TYPE
  FEMALE           2            91
  MALE             1            78
D223V4, continuous
[1] "Remove cluster labels:" "PTN MUTATED"           
clus
  PTN MUTATED PTN WILD-TYPE 
            1            11 
   TCGA-35-4123    TCGA-35-5375    TCGA-64-1677    TCGA-64-5778    TCGA-71-6725 
"PTN WILD-TYPE" "PTN WILD-TYPE" "PTN WILD-TYPE" "PTN WILD-TYPE" "PTN WILD-TYPE" 
   TCGA-73-4659    TCGA-73-4662    TCGA-73-4666    TCGA-73-4668    TCGA-73-4676 
"PTN WILD-TYPE" "PTN WILD-TYPE" "PTN WILD-TYPE" "PTN WILD-TYPE" "PTN WILD-TYPE" 
   TCGA-75-5122 
"PTN WILD-TYPE" 
D223V5, multiclass
D223V6, multiclass
    clus
vv   PTN MUTATED PTN WILD-TYPE
  T1           2            39
  T2           1           107
  T3           0            14
  T4           0             8
D223V7, multiclass
       clus
vv      PTN MUTATED PTN WILD-TYPE
  N0              3            92
  N1              0            37
  N2+N3           0            35
D223V8, multiclass
    clus
vv   PTN MUTATED PTN WILD-TYPE
  M0           2           135
  M1           0             9
  MX           1            21
D223V9, multiclass
     clus
vv    PTN MUTATED PTN WILD-TYPE
  I             3            85
  II            0            33
  III           0            39
  IV            0             9
D223V10, binary
[1] "tbl2"
               cls
clus            [,1] [,2]
  PTN MUTATED      0    3
  PTN WILD-TYPE   16  153
     clus
vv    PTN MUTATED PTN WILD-TYPE
  NO            0            16
  YES           3           153
D223V11, continuous
[1] "Remove cluster labels:" "PTN MUTATED"           
clus
  PTN MUTATED PTN WILD-TYPE 
            2           112 
   TCGA-05-4244    TCGA-05-4249    TCGA-05-4250    TCGA-05-4382    TCGA-05-4384 
"PTN WILD-TYPE" "PTN WILD-TYPE" "PTN WILD-TYPE" "PTN WILD-TYPE" "PTN WILD-TYPE" 
   TCGA-05-4389    TCGA-05-4390    TCGA-05-4395    TCGA-05-4396    TCGA-05-4397 
"PTN WILD-TYPE" "PTN WILD-TYPE" "PTN WILD-TYPE" "PTN WILD-TYPE" "PTN WILD-TYPE" 
   TCGA-05-4398    TCGA-05-4402    TCGA-05-4405    TCGA-05-4410    TCGA-05-4415 
"PTN WILD-TYPE" "PTN WILD-TYPE" "PTN WILD-TYPE" "PTN WILD-TYPE" "PTN WILD-TYPE" 
   TCGA-05-4417    TCGA-05-4418    TCGA-05-4420    TCGA-05-4422    TCGA-05-4424 
"PTN WILD-TYPE" "PTN WILD-TYPE" "PTN WILD-TYPE" "PTN WILD-TYPE" "PTN WILD-TYPE" 
   TCGA-05-4425    TCGA-05-4426    TCGA-05-4427    TCGA-05-4430    TCGA-05-4432 
"PTN WILD-TYPE" "PTN WILD-TYPE" "PTN WILD-TYPE" "PTN WILD-TYPE" "PTN WILD-TYPE" 
   TCGA-05-4433    TCGA-05-4434    TCGA-05-5420    TCGA-05-5423    TCGA-05-5425 
"PTN WILD-TYPE" "PTN WILD-TYPE" "PTN WILD-TYPE" "PTN WILD-TYPE" "PTN WILD-TYPE" 
   TCGA-05-5428    TCGA-35-4123    TCGA-35-5375    TCGA-38-4625    TCGA-38-4626 
"PTN WILD-TYPE" "PTN WILD-TYPE" "PTN WILD-TYPE" "PTN WILD-TYPE" "PTN WILD-TYPE" 
   TCGA-38-4629    TCGA-38-4631    TCGA-38-4632    TCGA-44-2655    TCGA-44-2656 
"PTN WILD-TYPE" "PTN WILD-TYPE" "PTN WILD-TYPE" "PTN WILD-TYPE" "PTN WILD-TYPE" 
   TCGA-44-2657    TCGA-44-2659    TCGA-44-2662    TCGA-44-2666    TCGA-44-2668 
"PTN WILD-TYPE" "PTN WILD-TYPE" "PTN WILD-TYPE" "PTN WILD-TYPE" "PTN WILD-TYPE" 
   TCGA-44-3396    TCGA-44-3398    TCGA-44-3918    TCGA-44-4112    TCGA-44-5643 
"PTN WILD-TYPE" "PTN WILD-TYPE" "PTN WILD-TYPE" "PTN WILD-TYPE" "PTN WILD-TYPE" 
   TCGA-44-5645    TCGA-44-6144    TCGA-44-6145    TCGA-44-6146    TCGA-44-6148 
"PTN WILD-TYPE" "PTN WILD-TYPE" "PTN WILD-TYPE" "PTN WILD-TYPE" "PTN WILD-TYPE" 
   TCGA-44-6774    TCGA-44-6775    TCGA-44-6776    TCGA-44-6777    TCGA-44-6778 
"PTN WILD-TYPE" "PTN WILD-TYPE" "PTN WILD-TYPE" "PTN WILD-TYPE" "PTN WILD-TYPE" 
   TCGA-44-6779    TCGA-49-4486    TCGA-49-4487    TCGA-49-4490    TCGA-49-4494 
"PTN WILD-TYPE" "PTN WILD-TYPE" "PTN WILD-TYPE" "PTN WILD-TYPE" "PTN WILD-TYPE" 
   TCGA-49-4505    TCGA-49-4506    TCGA-49-4507    TCGA-49-4510    TCGA-49-4514 
"PTN WILD-TYPE" "PTN WILD-TYPE" "PTN WILD-TYPE" "PTN WILD-TYPE" "PTN WILD-TYPE" 
   TCGA-49-6742    TCGA-49-6743    TCGA-49-6744    TCGA-49-6745    TCGA-49-6767 
"PTN WILD-TYPE" "PTN WILD-TYPE" "PTN WILD-TYPE" "PTN WILD-TYPE" "PTN WILD-TYPE" 
   TCGA-50-5051    TCGA-50-5072    TCGA-50-5931    TCGA-50-5939    TCGA-50-5941 
"PTN WILD-TYPE" "PTN WILD-TYPE" "PTN WILD-TYPE" "PTN WILD-TYPE" "PTN WILD-TYPE" 
   TCGA-50-5942    TCGA-50-6590    TCGA-55-1596    TCGA-55-6543    TCGA-64-1676 
"PTN WILD-TYPE" "PTN WILD-TYPE" "PTN WILD-TYPE" "PTN WILD-TYPE" "PTN WILD-TYPE" 
   TCGA-64-1677    TCGA-64-1678    TCGA-64-1680    TCGA-64-5774    TCGA-64-5775 
"PTN WILD-TYPE" "PTN WILD-TYPE" "PTN WILD-TYPE" "PTN WILD-TYPE" "PTN WILD-TYPE" 
   TCGA-64-5778    TCGA-64-5779    TCGA-64-5781    TCGA-64-5815    TCGA-73-4658 
"PTN WILD-TYPE" "PTN WILD-TYPE" "PTN WILD-TYPE" "PTN WILD-TYPE" "PTN WILD-TYPE" 
   TCGA-73-4659    TCGA-73-4662    TCGA-73-4666    TCGA-73-4668    TCGA-73-4670 
"PTN WILD-TYPE" "PTN WILD-TYPE" "PTN WILD-TYPE" "PTN WILD-TYPE" "PTN WILD-TYPE" 
   TCGA-73-4675    TCGA-73-4676    TCGA-75-5122    TCGA-75-5125    TCGA-75-5126 
"PTN WILD-TYPE" "PTN WILD-TYPE" "PTN WILD-TYPE" "PTN WILD-TYPE" "PTN WILD-TYPE" 
   TCGA-75-6203    TCGA-75-6206    TCGA-75-6207    TCGA-75-6211    TCGA-80-5611 
"PTN WILD-TYPE" "PTN WILD-TYPE" "PTN WILD-TYPE" "PTN WILD-TYPE" "PTN WILD-TYPE" 
   TCGA-91-6829    TCGA-91-6835 
"PTN WILD-TYPE" "PTN WILD-TYPE" 
D223V12, continuous
[1] "Remove cluster labels:" "PTN MUTATED"           
clus
  PTN MUTATED PTN WILD-TYPE 
            1            81 
   TCGA-05-4384    TCGA-05-4390    TCGA-05-4396    TCGA-05-4403    TCGA-05-4405 
"PTN WILD-TYPE" "PTN WILD-TYPE" "PTN WILD-TYPE" "PTN WILD-TYPE" "PTN WILD-TYPE" 
   TCGA-05-4410    TCGA-05-4415    TCGA-05-4417    TCGA-05-4424    TCGA-05-4427 
"PTN WILD-TYPE" "PTN WILD-TYPE" "PTN WILD-TYPE" "PTN WILD-TYPE" "PTN WILD-TYPE" 
   TCGA-05-4433    TCGA-05-5420    TCGA-05-5423    TCGA-05-5425    TCGA-05-5428 
"PTN WILD-TYPE" "PTN WILD-TYPE" "PTN WILD-TYPE" "PTN WILD-TYPE" "PTN WILD-TYPE" 
   TCGA-35-4123    TCGA-35-5375    TCGA-38-4629    TCGA-38-4632    TCGA-44-2655 
"PTN WILD-TYPE" "PTN WILD-TYPE" "PTN WILD-TYPE" "PTN WILD-TYPE" "PTN WILD-TYPE" 
   TCGA-44-2656    TCGA-44-2657    TCGA-44-2659    TCGA-44-2662    TCGA-44-2668 
"PTN WILD-TYPE" "PTN WILD-TYPE" "PTN WILD-TYPE" "PTN WILD-TYPE" "PTN WILD-TYPE" 
   TCGA-44-3398    TCGA-44-3918    TCGA-44-4112    TCGA-44-5645    TCGA-44-6145 
"PTN WILD-TYPE" "PTN WILD-TYPE" "PTN WILD-TYPE" "PTN WILD-TYPE" "PTN WILD-TYPE" 
   TCGA-44-6146    TCGA-44-6147    TCGA-44-6148    TCGA-44-6775    TCGA-44-6776 
"PTN WILD-TYPE" "PTN WILD-TYPE" "PTN WILD-TYPE" "PTN WILD-TYPE" "PTN WILD-TYPE" 
   TCGA-44-6777    TCGA-44-6778    TCGA-44-6779    TCGA-49-4486    TCGA-49-4488 
"PTN WILD-TYPE" "PTN WILD-TYPE" "PTN WILD-TYPE" "PTN WILD-TYPE" "PTN WILD-TYPE" 
   TCGA-49-4494    TCGA-49-4505    TCGA-49-4507    TCGA-50-5051    TCGA-50-5072 
"PTN WILD-TYPE" "PTN WILD-TYPE" "PTN WILD-TYPE" "PTN WILD-TYPE" "PTN WILD-TYPE" 
   TCGA-50-5939    TCGA-50-5942    TCGA-50-5946    TCGA-50-6590    TCGA-50-6594 
"PTN WILD-TYPE" "PTN WILD-TYPE" "PTN WILD-TYPE" "PTN WILD-TYPE" "PTN WILD-TYPE" 
   TCGA-50-6595    TCGA-55-1592    TCGA-55-1595    TCGA-55-6543    TCGA-55-6712 
"PTN WILD-TYPE" "PTN WILD-TYPE" "PTN WILD-TYPE" "PTN WILD-TYPE" "PTN WILD-TYPE" 
   TCGA-64-1678    TCGA-64-1680    TCGA-64-5774    TCGA-64-5778    TCGA-64-5779 
"PTN WILD-TYPE" "PTN WILD-TYPE" "PTN WILD-TYPE" "PTN WILD-TYPE" "PTN WILD-TYPE" 
   TCGA-64-5781    TCGA-64-5815    TCGA-67-6217    TCGA-73-4659    TCGA-73-4662 
"PTN WILD-TYPE" "PTN WILD-TYPE" "PTN WILD-TYPE" "PTN WILD-TYPE" "PTN WILD-TYPE" 
   TCGA-73-4666    TCGA-73-4668    TCGA-73-4670    TCGA-73-4675    TCGA-73-4676 
"PTN WILD-TYPE" "PTN WILD-TYPE" "PTN WILD-TYPE" "PTN WILD-TYPE" "PTN WILD-TYPE" 
   TCGA-73-4677    TCGA-75-5122    TCGA-75-5125    TCGA-75-5126    TCGA-75-5146 
"PTN WILD-TYPE" "PTN WILD-TYPE" "PTN WILD-TYPE" "PTN WILD-TYPE" "PTN WILD-TYPE" 
   TCGA-75-6206    TCGA-75-6207    TCGA-80-5611    TCGA-91-6828    TCGA-91-6829 
"PTN WILD-TYPE" "PTN WILD-TYPE" "PTN WILD-TYPE" "PTN WILD-TYPE" "PTN WILD-TYPE" 
   TCGA-91-6835 
"PTN WILD-TYPE" 
D223V13, multiclass
                                             clus
vv                                            PTN MUTATED PTN WILD-TYPE
  CURRENT REFORMED SMOKER FOR < OR = 15 YEARS           1            61
  CURRENT REFORMED SMOKER FOR > 15 YEARS                0            46
  CURRENT SMOKER                                        1            27
  LIFELONG NON-SMOKER                                   1            23
D223V14, continuous
[1] "Remove cluster labels:" "PTN MUTATED"           
clus
  PTN MUTATED PTN WILD-TYPE 
            2            66 
   TCGA-05-4384    TCGA-05-4390    TCGA-05-4396    TCGA-05-4405    TCGA-05-4410 
"PTN WILD-TYPE" "PTN WILD-TYPE" "PTN WILD-TYPE" "PTN WILD-TYPE" "PTN WILD-TYPE" 
   TCGA-05-4415    TCGA-05-4417    TCGA-05-4424    TCGA-05-4427    TCGA-05-4433 
"PTN WILD-TYPE" "PTN WILD-TYPE" "PTN WILD-TYPE" "PTN WILD-TYPE" "PTN WILD-TYPE" 
   TCGA-05-5420    TCGA-05-5423    TCGA-05-5425    TCGA-05-5428    TCGA-35-4123 
"PTN WILD-TYPE" "PTN WILD-TYPE" "PTN WILD-TYPE" "PTN WILD-TYPE" "PTN WILD-TYPE" 
   TCGA-35-5375    TCGA-38-4625    TCGA-38-4626    TCGA-44-2655    TCGA-44-2656 
"PTN WILD-TYPE" "PTN WILD-TYPE" "PTN WILD-TYPE" "PTN WILD-TYPE" "PTN WILD-TYPE" 
   TCGA-44-2657    TCGA-44-2659    TCGA-44-2662    TCGA-44-2666    TCGA-44-2668 
"PTN WILD-TYPE" "PTN WILD-TYPE" "PTN WILD-TYPE" "PTN WILD-TYPE" "PTN WILD-TYPE" 
   TCGA-44-3396    TCGA-44-3398    TCGA-44-3918    TCGA-44-4112    TCGA-44-5645 
"PTN WILD-TYPE" "PTN WILD-TYPE" "PTN WILD-TYPE" "PTN WILD-TYPE" "PTN WILD-TYPE" 
   TCGA-44-6144    TCGA-44-6145    TCGA-44-6147    TCGA-44-6148    TCGA-44-6774 
"PTN WILD-TYPE" "PTN WILD-TYPE" "PTN WILD-TYPE" "PTN WILD-TYPE" "PTN WILD-TYPE" 
   TCGA-44-6775    TCGA-44-6776    TCGA-44-6777    TCGA-44-6778    TCGA-44-6779 
"PTN WILD-TYPE" "PTN WILD-TYPE" "PTN WILD-TYPE" "PTN WILD-TYPE" "PTN WILD-TYPE" 
   TCGA-49-4486    TCGA-49-4494    TCGA-49-4505    TCGA-55-1592    TCGA-55-1594 
"PTN WILD-TYPE" "PTN WILD-TYPE" "PTN WILD-TYPE" "PTN WILD-TYPE" "PTN WILD-TYPE" 
   TCGA-55-1595    TCGA-55-1596    TCGA-55-5899    TCGA-55-6642    TCGA-55-6712 
"PTN WILD-TYPE" "PTN WILD-TYPE" "PTN WILD-TYPE" "PTN WILD-TYPE" "PTN WILD-TYPE" 
   TCGA-64-1677    TCGA-64-1678    TCGA-64-1680    TCGA-64-5774    TCGA-64-5775 
"PTN WILD-TYPE" "PTN WILD-TYPE" "PTN WILD-TYPE" "PTN WILD-TYPE" "PTN WILD-TYPE" 
   TCGA-64-5778    TCGA-64-5779    TCGA-64-5781    TCGA-73-4659    TCGA-73-4662 
"PTN WILD-TYPE" "PTN WILD-TYPE" "PTN WILD-TYPE" "PTN WILD-TYPE" "PTN WILD-TYPE" 
   TCGA-73-4666    TCGA-73-4668    TCGA-73-4670    TCGA-73-4675    TCGA-73-4676 
"PTN WILD-TYPE" "PTN WILD-TYPE" "PTN WILD-TYPE" "PTN WILD-TYPE" "PTN WILD-TYPE" 
   TCGA-91-6829 
"PTN WILD-TYPE" 

Clustering(224) Variable = EGFR MUTATION ANALYSIS
D224V1, survival
                sevent
clus2             0  1
  EGFR MUTATED    9 10
  EGFR WILD-TYPE 90 40
  EGFR MUTATED EGFR WILD-TYPE 
            19            130 
  EGFR MUTATED EGFR WILD-TYPE 
            10             40 
$`EGFR MUTATED`
TCGA-05-4382 TCGA-05-4396 TCGA-05-4402 TCGA-05-5423 TCGA-38-4627 TCGA-38-4628 
       19.92         9.96         8.02         4.96        37.71        49.02 
TCGA-38-4629 TCGA-38-6178 TCGA-44-6147 TCGA-49-4490 TCGA-49-4494 TCGA-49-4501 
       28.37         5.19         7.76        12.66        35.54        46.72 
TCGA-50-5944 TCGA-50-6591 TCGA-50-6595 TCGA-67-3770 TCGA-67-3772 TCGA-67-6217 
       12.26         3.88         6.21         0.99         0.59        13.87 
TCGA-91-6835 
        1.15 

$`EGFR WILD-TYPE`
TCGA-05-4249 TCGA-05-4250 TCGA-05-4384 TCGA-05-4390 TCGA-05-4397 TCGA-05-4398 
       38.07         3.98        14.01        37.02        24.03        47.05 
TCGA-05-4405 TCGA-05-4415 TCGA-05-4417 TCGA-05-4418 TCGA-05-4420 TCGA-05-4424 
       20.05         2.96        14.93         8.98        29.95        30.02 
TCGA-05-4426 TCGA-05-4427 TCGA-05-4430 TCGA-05-4432 TCGA-05-4433 TCGA-05-4434 
       26.01        26.01        25.02        25.02        24.00        15.02 
TCGA-05-5420 TCGA-05-5425 TCGA-05-5429 TCGA-05-5715 TCGA-35-3615 TCGA-35-4122 
        1.02         2.96         0.99         2.04         0.46         7.36 
TCGA-35-4123 TCGA-35-5375 TCGA-38-4625 TCGA-38-4626 TCGA-38-4630 TCGA-38-4631 
        5.95         8.68        47.61        85.32        35.28        11.64 
TCGA-38-4632 TCGA-44-2655 TCGA-44-2656 TCGA-44-2657 TCGA-44-2659 TCGA-44-2661 
       44.61        18.87        19.10        13.15        17.39         3.39 
TCGA-44-2662 TCGA-44-2665 TCGA-44-2666 TCGA-44-2668 TCGA-44-3396 TCGA-44-3398 
       15.78        13.15         3.19         8.09        10.22         8.32 
TCGA-44-3918 TCGA-44-3919 TCGA-44-4112 TCGA-44-5643 TCGA-44-5645 TCGA-44-6144 
        6.44         6.21         4.60         3.48         6.84         0.30 
TCGA-44-6145 TCGA-44-6146 TCGA-44-6148 TCGA-44-6774 TCGA-44-6775 TCGA-44-6776 
        3.35         9.93         3.12         5.42         2.70        63.72 
TCGA-44-6777 TCGA-44-6778 TCGA-44-6779 TCGA-49-4486 TCGA-49-4487 TCGA-49-4488 
       32.45        36.49        16.41        76.21        28.11        28.57 
TCGA-49-4505 TCGA-49-4506 TCGA-49-4507 TCGA-49-4510 TCGA-49-4512 TCGA-49-4514 
       14.07        32.84         8.81        29.46        29.75        43.20 
TCGA-49-6742 TCGA-49-6743 TCGA-49-6744 TCGA-49-6745 TCGA-50-5044 TCGA-50-5045 
       15.02        12.13        12.99         4.93        20.48        71.47 
TCGA-50-5049 TCGA-50-5051 TCGA-50-5055 TCGA-50-5066 TCGA-50-5068 TCGA-50-5072 
       48.82        14.96        25.81         9.76        49.28         8.05 
TCGA-50-5930 TCGA-50-5931 TCGA-50-5932 TCGA-50-5933 TCGA-50-5935 TCGA-50-5936 
        9.27         8.78        35.87        77.88        21.47         8.45 
TCGA-50-5939 TCGA-50-5941 TCGA-50-5942 TCGA-50-5946 TCGA-50-6590 TCGA-50-6592 
       15.12         9.37         4.44        11.47        42.31        25.51 
TCGA-50-6593 TCGA-50-6594 TCGA-50-6597 TCGA-55-1592 TCGA-55-1594 TCGA-55-1595 
       11.05        12.16        33.37        23.05        38.73        48.62 
TCGA-55-1596 TCGA-55-5899 TCGA-55-6543 TCGA-55-6642 TCGA-55-6712 TCGA-64-1676 
       45.17         2.86         0.07        32.61         0.79        56.81 
TCGA-64-1677 TCGA-64-1678 TCGA-64-1680 TCGA-64-5774 TCGA-64-5775 TCGA-64-5778 
       20.65        39.09        37.02        83.84         0.10        30.44 
TCGA-64-5779 TCGA-64-5781 TCGA-64-5815 TCGA-67-3771 TCGA-67-3773 TCGA-67-3774 
       16.67        39.52         7.33         1.97         2.04         0.59 
TCGA-67-6215 TCGA-67-6216 TCGA-71-6725 TCGA-73-4658 TCGA-73-4659 TCGA-73-4662 
        0.89         0.69         2.01        52.57        23.38        29.95 
TCGA-73-4666 TCGA-73-4668 TCGA-73-4670 TCGA-73-4675 TCGA-73-4676 TCGA-73-4677 
       20.28        15.35         0.46         1.32         4.01         1.25 
TCGA-91-6828 TCGA-91-6829 TCGA-91-6831 TCGA-91-6836 
        1.22        41.33         1.28         0.36 

  EGFR MUTATED EGFR WILD-TYPE 
          0.59           0.07 
  EGFR MUTATED EGFR WILD-TYPE 
         49.02          85.32 
  EGFR MUTATED EGFR WILD-TYPE 
         9.960         14.945 
[1] "0.6 - 49.0 (10.0)" "0.1 - 85.3 (14.9)"
    TCGA-05-4249     TCGA-05-4250     TCGA-05-4382     TCGA-05-4384 
"EGFR WILD-TYPE" "EGFR WILD-TYPE"   "EGFR MUTATED" "EGFR WILD-TYPE" 
    TCGA-05-4390     TCGA-05-4396     TCGA-05-4397     TCGA-05-4398 
"EGFR WILD-TYPE"   "EGFR MUTATED" "EGFR WILD-TYPE" "EGFR WILD-TYPE" 
    TCGA-05-4402     TCGA-05-4405     TCGA-05-4415     TCGA-05-4417 
  "EGFR MUTATED" "EGFR WILD-TYPE" "EGFR WILD-TYPE" "EGFR WILD-TYPE" 
    TCGA-05-4418     TCGA-05-4420     TCGA-05-4424     TCGA-05-4426 
"EGFR WILD-TYPE" "EGFR WILD-TYPE" "EGFR WILD-TYPE" "EGFR WILD-TYPE" 
    TCGA-05-4427     TCGA-05-4430     TCGA-05-4432     TCGA-05-4433 
"EGFR WILD-TYPE" "EGFR WILD-TYPE" "EGFR WILD-TYPE" "EGFR WILD-TYPE" 
    TCGA-05-4434     TCGA-05-5420     TCGA-05-5423     TCGA-05-5425 
"EGFR WILD-TYPE" "EGFR WILD-TYPE"   "EGFR MUTATED" "EGFR WILD-TYPE" 
    TCGA-05-5429     TCGA-05-5715     TCGA-35-3615     TCGA-35-4122 
"EGFR WILD-TYPE" "EGFR WILD-TYPE" "EGFR WILD-TYPE" "EGFR WILD-TYPE" 
    TCGA-35-4123     TCGA-35-5375     TCGA-38-4625     TCGA-38-4626 
"EGFR WILD-TYPE" "EGFR WILD-TYPE" "EGFR WILD-TYPE" "EGFR WILD-TYPE" 
    TCGA-38-4627     TCGA-38-4628     TCGA-38-4629     TCGA-38-4630 
  "EGFR MUTATED"   "EGFR MUTATED"   "EGFR MUTATED" "EGFR WILD-TYPE" 
    TCGA-38-4631     TCGA-38-4632     TCGA-38-6178     TCGA-44-2655 
"EGFR WILD-TYPE" "EGFR WILD-TYPE"   "EGFR MUTATED" "EGFR WILD-TYPE" 
    TCGA-44-2656     TCGA-44-2657     TCGA-44-2659     TCGA-44-2661 
"EGFR WILD-TYPE" "EGFR WILD-TYPE" "EGFR WILD-TYPE" "EGFR WILD-TYPE" 
    TCGA-44-2662     TCGA-44-2665     TCGA-44-2666     TCGA-44-2668 
"EGFR WILD-TYPE" "EGFR WILD-TYPE" "EGFR WILD-TYPE" "EGFR WILD-TYPE" 
    TCGA-44-3396     TCGA-44-3398     TCGA-44-3918     TCGA-44-3919 
"EGFR WILD-TYPE" "EGFR WILD-TYPE" "EGFR WILD-TYPE" "EGFR WILD-TYPE" 
    TCGA-44-4112     TCGA-44-5643     TCGA-44-5645     TCGA-44-6144 
"EGFR WILD-TYPE" "EGFR WILD-TYPE" "EGFR WILD-TYPE" "EGFR WILD-TYPE" 
    TCGA-44-6145     TCGA-44-6146     TCGA-44-6147     TCGA-44-6148 
"EGFR WILD-TYPE" "EGFR WILD-TYPE"   "EGFR MUTATED" "EGFR WILD-TYPE" 
    TCGA-44-6774     TCGA-44-6775     TCGA-44-6776     TCGA-44-6777 
"EGFR WILD-TYPE" "EGFR WILD-TYPE" "EGFR WILD-TYPE" "EGFR WILD-TYPE" 
    TCGA-44-6778     TCGA-44-6779     TCGA-49-4486     TCGA-49-4487 
"EGFR WILD-TYPE" "EGFR WILD-TYPE" "EGFR WILD-TYPE" "EGFR WILD-TYPE" 
    TCGA-49-4488     TCGA-49-4490     TCGA-49-4494     TCGA-49-4501 
"EGFR WILD-TYPE"   "EGFR MUTATED"   "EGFR MUTATED"   "EGFR MUTATED" 
    TCGA-49-4505     TCGA-49-4506     TCGA-49-4507     TCGA-49-4510 
"EGFR WILD-TYPE" "EGFR WILD-TYPE" "EGFR WILD-TYPE" "EGFR WILD-TYPE" 
    TCGA-49-4512     TCGA-49-4514     TCGA-49-6742     TCGA-49-6743 
"EGFR WILD-TYPE" "EGFR WILD-TYPE" "EGFR WILD-TYPE" "EGFR WILD-TYPE" 
    TCGA-49-6744     TCGA-49-6745     TCGA-50-5044     TCGA-50-5045 
"EGFR WILD-TYPE" "EGFR WILD-TYPE" "EGFR WILD-TYPE" "EGFR WILD-TYPE" 
    TCGA-50-5049     TCGA-50-5051     TCGA-50-5055     TCGA-50-5066 
"EGFR WILD-TYPE" "EGFR WILD-TYPE" "EGFR WILD-TYPE" "EGFR WILD-TYPE" 
    TCGA-50-5068     TCGA-50-5072     TCGA-50-5930     TCGA-50-5931 
"EGFR WILD-TYPE" "EGFR WILD-TYPE" "EGFR WILD-TYPE" "EGFR WILD-TYPE" 
    TCGA-50-5932     TCGA-50-5933     TCGA-50-5935     TCGA-50-5936 
"EGFR WILD-TYPE" "EGFR WILD-TYPE" "EGFR WILD-TYPE" "EGFR WILD-TYPE" 
    TCGA-50-5939     TCGA-50-5941     TCGA-50-5942     TCGA-50-5944 
"EGFR WILD-TYPE" "EGFR WILD-TYPE" "EGFR WILD-TYPE"   "EGFR MUTATED" 
    TCGA-50-5946     TCGA-50-6590     TCGA-50-6591     TCGA-50-6592 
"EGFR WILD-TYPE" "EGFR WILD-TYPE"   "EGFR MUTATED" "EGFR WILD-TYPE" 
    TCGA-50-6593     TCGA-50-6594     TCGA-50-6595     TCGA-50-6597 
"EGFR WILD-TYPE" "EGFR WILD-TYPE"   "EGFR MUTATED" "EGFR WILD-TYPE" 
    TCGA-55-1592     TCGA-55-1594     TCGA-55-1595     TCGA-55-1596 
"EGFR WILD-TYPE" "EGFR WILD-TYPE" "EGFR WILD-TYPE" "EGFR WILD-TYPE" 
    TCGA-55-5899     TCGA-55-6543     TCGA-55-6642     TCGA-55-6712 
"EGFR WILD-TYPE" "EGFR WILD-TYPE" "EGFR WILD-TYPE" "EGFR WILD-TYPE" 
    TCGA-64-1676     TCGA-64-1677     TCGA-64-1678     TCGA-64-1680 
"EGFR WILD-TYPE" "EGFR WILD-TYPE" "EGFR WILD-TYPE" "EGFR WILD-TYPE" 
    TCGA-64-5774     TCGA-64-5775     TCGA-64-5778     TCGA-64-5779 
"EGFR WILD-TYPE" "EGFR WILD-TYPE" "EGFR WILD-TYPE" "EGFR WILD-TYPE" 
    TCGA-64-5781     TCGA-64-5815     TCGA-67-3770     TCGA-67-3771 
"EGFR WILD-TYPE" "EGFR WILD-TYPE"   "EGFR MUTATED" "EGFR WILD-TYPE" 
    TCGA-67-3772     TCGA-67-3773     TCGA-67-3774     TCGA-67-6215 
  "EGFR MUTATED" "EGFR WILD-TYPE" "EGFR WILD-TYPE" "EGFR WILD-TYPE" 
    TCGA-67-6216     TCGA-67-6217     TCGA-71-6725     TCGA-73-4658 
"EGFR WILD-TYPE"   "EGFR MUTATED" "EGFR WILD-TYPE" "EGFR WILD-TYPE" 
    TCGA-73-4659     TCGA-73-4662     TCGA-73-4666     TCGA-73-4668 
"EGFR WILD-TYPE" "EGFR WILD-TYPE" "EGFR WILD-TYPE" "EGFR WILD-TYPE" 
    TCGA-73-4670     TCGA-73-4675     TCGA-73-4676     TCGA-73-4677 
"EGFR WILD-TYPE" "EGFR WILD-TYPE" "EGFR WILD-TYPE" "EGFR WILD-TYPE" 
    TCGA-91-6828     TCGA-91-6829     TCGA-91-6831     TCGA-91-6835 
"EGFR WILD-TYPE" "EGFR WILD-TYPE" "EGFR WILD-TYPE"   "EGFR MUTATED" 
    TCGA-91-6836 
"EGFR WILD-TYPE" 
    TCGA-05-4249     TCGA-05-4250     TCGA-05-4382     TCGA-05-4384 
"EGFR WILD-TYPE" "EGFR WILD-TYPE"   "EGFR MUTATED" "EGFR WILD-TYPE" 
    TCGA-05-4390     TCGA-05-4396     TCGA-05-4397     TCGA-05-4398 
"EGFR WILD-TYPE"   "EGFR MUTATED" "EGFR WILD-TYPE" "EGFR WILD-TYPE" 
    TCGA-05-4402     TCGA-05-4405     TCGA-05-4415     TCGA-05-4417 
  "EGFR MUTATED" "EGFR WILD-TYPE" "EGFR WILD-TYPE" "EGFR WILD-TYPE" 
    TCGA-05-4418     TCGA-05-4420     TCGA-05-4424     TCGA-05-4426 
"EGFR WILD-TYPE" "EGFR WILD-TYPE" "EGFR WILD-TYPE" "EGFR WILD-TYPE" 
    TCGA-05-4427     TCGA-05-4430     TCGA-05-4432     TCGA-05-4433 
"EGFR WILD-TYPE" "EGFR WILD-TYPE" "EGFR WILD-TYPE" "EGFR WILD-TYPE" 
    TCGA-05-4434     TCGA-05-5420     TCGA-05-5423     TCGA-05-5425 
"EGFR WILD-TYPE" "EGFR WILD-TYPE"   "EGFR MUTATED" "EGFR WILD-TYPE" 
    TCGA-05-5429     TCGA-05-5715     TCGA-35-3615     TCGA-35-4122 
"EGFR WILD-TYPE" "EGFR WILD-TYPE" "EGFR WILD-TYPE" "EGFR WILD-TYPE" 
    TCGA-35-4123     TCGA-35-5375     TCGA-38-4625     TCGA-38-4626 
"EGFR WILD-TYPE" "EGFR WILD-TYPE" "EGFR WILD-TYPE" "EGFR WILD-TYPE" 
    TCGA-38-4627     TCGA-38-4628     TCGA-38-4629     TCGA-38-4630 
  "EGFR MUTATED"   "EGFR MUTATED"   "EGFR MUTATED" "EGFR WILD-TYPE" 
    TCGA-38-4631     TCGA-38-4632     TCGA-38-6178     TCGA-44-2655 
"EGFR WILD-TYPE" "EGFR WILD-TYPE"   "EGFR MUTATED" "EGFR WILD-TYPE" 
    TCGA-44-2656     TCGA-44-2657     TCGA-44-2659     TCGA-44-2661 
"EGFR WILD-TYPE" "EGFR WILD-TYPE" "EGFR WILD-TYPE" "EGFR WILD-TYPE" 
    TCGA-44-2662     TCGA-44-2665     TCGA-44-2666     TCGA-44-2668 
"EGFR WILD-TYPE" "EGFR WILD-TYPE" "EGFR WILD-TYPE" "EGFR WILD-TYPE" 
    TCGA-44-3396     TCGA-44-3398     TCGA-44-3918     TCGA-44-3919 
"EGFR WILD-TYPE" "EGFR WILD-TYPE" "EGFR WILD-TYPE" "EGFR WILD-TYPE" 
    TCGA-44-4112     TCGA-44-5643     TCGA-44-5645     TCGA-44-6144 
"EGFR WILD-TYPE" "EGFR WILD-TYPE" "EGFR WILD-TYPE" "EGFR WILD-TYPE" 
    TCGA-44-6145     TCGA-44-6146     TCGA-44-6147     TCGA-44-6148 
"EGFR WILD-TYPE" "EGFR WILD-TYPE"   "EGFR MUTATED" "EGFR WILD-TYPE" 
    TCGA-44-6774     TCGA-44-6775     TCGA-44-6776     TCGA-44-6777 
"EGFR WILD-TYPE" "EGFR WILD-TYPE" "EGFR WILD-TYPE" "EGFR WILD-TYPE" 
    TCGA-44-6778     TCGA-44-6779     TCGA-49-4486     TCGA-49-4487 
"EGFR WILD-TYPE" "EGFR WILD-TYPE" "EGFR WILD-TYPE" "EGFR WILD-TYPE" 
    TCGA-49-4488     TCGA-49-4490     TCGA-49-4494     TCGA-49-4501 
"EGFR WILD-TYPE"   "EGFR MUTATED"   "EGFR MUTATED"   "EGFR MUTATED" 
    TCGA-49-4505     TCGA-49-4506     TCGA-49-4507     TCGA-49-4510 
"EGFR WILD-TYPE" "EGFR WILD-TYPE" "EGFR WILD-TYPE" "EGFR WILD-TYPE" 
    TCGA-49-4512     TCGA-49-4514     TCGA-49-6742     TCGA-49-6743 
"EGFR WILD-TYPE" "EGFR WILD-TYPE" "EGFR WILD-TYPE" "EGFR WILD-TYPE" 
    TCGA-49-6744     TCGA-49-6745     TCGA-50-5044     TCGA-50-5045 
"EGFR WILD-TYPE" "EGFR WILD-TYPE" "EGFR WILD-TYPE" "EGFR WILD-TYPE" 
    TCGA-50-5049     TCGA-50-5051     TCGA-50-5055     TCGA-50-5066 
"EGFR WILD-TYPE" "EGFR WILD-TYPE" "EGFR WILD-TYPE" "EGFR WILD-TYPE" 
    TCGA-50-5068     TCGA-50-5072     TCGA-50-5930     TCGA-50-5931 
"EGFR WILD-TYPE" "EGFR WILD-TYPE" "EGFR WILD-TYPE" "EGFR WILD-TYPE" 
    TCGA-50-5932     TCGA-50-5933     TCGA-50-5935     TCGA-50-5936 
"EGFR WILD-TYPE" "EGFR WILD-TYPE" "EGFR WILD-TYPE" "EGFR WILD-TYPE" 
    TCGA-50-5939     TCGA-50-5941     TCGA-50-5942     TCGA-50-5944 
"EGFR WILD-TYPE" "EGFR WILD-TYPE" "EGFR WILD-TYPE"   "EGFR MUTATED" 
    TCGA-50-5946     TCGA-50-6590     TCGA-50-6591     TCGA-50-6592 
"EGFR WILD-TYPE" "EGFR WILD-TYPE"   "EGFR MUTATED" "EGFR WILD-TYPE" 
    TCGA-50-6593     TCGA-50-6594     TCGA-50-6595     TCGA-50-6597 
"EGFR WILD-TYPE" "EGFR WILD-TYPE"   "EGFR MUTATED" "EGFR WILD-TYPE" 
    TCGA-55-1592     TCGA-55-1594     TCGA-55-1595     TCGA-55-1596 
"EGFR WILD-TYPE" "EGFR WILD-TYPE" "EGFR WILD-TYPE" "EGFR WILD-TYPE" 
    TCGA-55-5899     TCGA-55-6543     TCGA-55-6642     TCGA-55-6712 
"EGFR WILD-TYPE" "EGFR WILD-TYPE" "EGFR WILD-TYPE" "EGFR WILD-TYPE" 
    TCGA-64-1676     TCGA-64-1677     TCGA-64-1678     TCGA-64-1680 
"EGFR WILD-TYPE" "EGFR WILD-TYPE" "EGFR WILD-TYPE" "EGFR WILD-TYPE" 
    TCGA-64-5774     TCGA-64-5775     TCGA-64-5778     TCGA-64-5779 
"EGFR WILD-TYPE" "EGFR WILD-TYPE" "EGFR WILD-TYPE" "EGFR WILD-TYPE" 
    TCGA-64-5781     TCGA-64-5815     TCGA-67-3770     TCGA-67-3771 
"EGFR WILD-TYPE" "EGFR WILD-TYPE"   "EGFR MUTATED" "EGFR WILD-TYPE" 
    TCGA-67-3772     TCGA-67-3773     TCGA-67-3774     TCGA-67-6215 
  "EGFR MUTATED" "EGFR WILD-TYPE" "EGFR WILD-TYPE" "EGFR WILD-TYPE" 
    TCGA-67-6216     TCGA-67-6217     TCGA-71-6725     TCGA-73-4658 
"EGFR WILD-TYPE"   "EGFR MUTATED" "EGFR WILD-TYPE" "EGFR WILD-TYPE" 
    TCGA-73-4659     TCGA-73-4662     TCGA-73-4666     TCGA-73-4668 
"EGFR WILD-TYPE" "EGFR WILD-TYPE" "EGFR WILD-TYPE" "EGFR WILD-TYPE" 
    TCGA-73-4670     TCGA-73-4675     TCGA-73-4676     TCGA-73-4677 
"EGFR WILD-TYPE" "EGFR WILD-TYPE" "EGFR WILD-TYPE" "EGFR WILD-TYPE" 
    TCGA-91-6828     TCGA-91-6829     TCGA-91-6831     TCGA-91-6835 
"EGFR WILD-TYPE" "EGFR WILD-TYPE" "EGFR WILD-TYPE"   "EGFR MUTATED" 
    TCGA-91-6836 
"EGFR WILD-TYPE" 
    TCGA-05-4249     TCGA-05-4250     TCGA-05-4382     TCGA-05-4384 
"EGFR WILD-TYPE" "EGFR WILD-TYPE"   "EGFR MUTATED" "EGFR WILD-TYPE" 
    TCGA-05-4390     TCGA-05-4396     TCGA-05-4397     TCGA-05-4398 
"EGFR WILD-TYPE"   "EGFR MUTATED" "EGFR WILD-TYPE" "EGFR WILD-TYPE" 
    TCGA-05-4402     TCGA-05-4405     TCGA-05-4415     TCGA-05-4417 
  "EGFR MUTATED" "EGFR WILD-TYPE" "EGFR WILD-TYPE" "EGFR WILD-TYPE" 
    TCGA-05-4418     TCGA-05-4420     TCGA-05-4424     TCGA-05-4426 
"EGFR WILD-TYPE" "EGFR WILD-TYPE" "EGFR WILD-TYPE" "EGFR WILD-TYPE" 
    TCGA-05-4427     TCGA-05-4430     TCGA-05-4432     TCGA-05-4433 
"EGFR WILD-TYPE" "EGFR WILD-TYPE" "EGFR WILD-TYPE" "EGFR WILD-TYPE" 
    TCGA-05-4434     TCGA-05-5420     TCGA-05-5423     TCGA-05-5425 
"EGFR WILD-TYPE" "EGFR WILD-TYPE"   "EGFR MUTATED" "EGFR WILD-TYPE" 
    TCGA-05-5429     TCGA-05-5715     TCGA-35-3615     TCGA-35-4122 
"EGFR WILD-TYPE" "EGFR WILD-TYPE" "EGFR WILD-TYPE" "EGFR WILD-TYPE" 
    TCGA-35-4123     TCGA-35-5375     TCGA-38-4625     TCGA-38-4626 
"EGFR WILD-TYPE" "EGFR WILD-TYPE" "EGFR WILD-TYPE" "EGFR WILD-TYPE" 
    TCGA-38-4627     TCGA-38-4628     TCGA-38-4629     TCGA-38-4630 
  "EGFR MUTATED"   "EGFR MUTATED"   "EGFR MUTATED" "EGFR WILD-TYPE" 
    TCGA-38-4631     TCGA-38-4632     TCGA-38-6178     TCGA-44-2655 
"EGFR WILD-TYPE" "EGFR WILD-TYPE"   "EGFR MUTATED" "EGFR WILD-TYPE" 
    TCGA-44-2656     TCGA-44-2657     TCGA-44-2659     TCGA-44-2661 
"EGFR WILD-TYPE" "EGFR WILD-TYPE" "EGFR WILD-TYPE" "EGFR WILD-TYPE" 
    TCGA-44-2662     TCGA-44-2665     TCGA-44-2666     TCGA-44-2668 
"EGFR WILD-TYPE" "EGFR WILD-TYPE" "EGFR WILD-TYPE" "EGFR WILD-TYPE" 
    TCGA-44-3396     TCGA-44-3398     TCGA-44-3918     TCGA-44-3919 
"EGFR WILD-TYPE" "EGFR WILD-TYPE" "EGFR WILD-TYPE" "EGFR WILD-TYPE" 
    TCGA-44-4112     TCGA-44-5643     TCGA-44-5645     TCGA-44-6144 
"EGFR WILD-TYPE" "EGFR WILD-TYPE" "EGFR WILD-TYPE" "EGFR WILD-TYPE" 
    TCGA-44-6145     TCGA-44-6146     TCGA-44-6147     TCGA-44-6148 
"EGFR WILD-TYPE" "EGFR WILD-TYPE"   "EGFR MUTATED" "EGFR WILD-TYPE" 
    TCGA-44-6774     TCGA-44-6775     TCGA-44-6776     TCGA-44-6777 
"EGFR WILD-TYPE" "EGFR WILD-TYPE" "EGFR WILD-TYPE" "EGFR WILD-TYPE" 
    TCGA-44-6778     TCGA-44-6779     TCGA-49-4486     TCGA-49-4487 
"EGFR WILD-TYPE" "EGFR WILD-TYPE" "EGFR WILD-TYPE" "EGFR WILD-TYPE" 
    TCGA-49-4488     TCGA-49-4490     TCGA-49-4494     TCGA-49-4501 
"EGFR WILD-TYPE"   "EGFR MUTATED"   "EGFR MUTATED"   "EGFR MUTATED" 
    TCGA-49-4505     TCGA-49-4506     TCGA-49-4507     TCGA-49-4510 
"EGFR WILD-TYPE" "EGFR WILD-TYPE" "EGFR WILD-TYPE" "EGFR WILD-TYPE" 
    TCGA-49-4512     TCGA-49-4514     TCGA-49-6742     TCGA-49-6743 
"EGFR WILD-TYPE" "EGFR WILD-TYPE" "EGFR WILD-TYPE" "EGFR WILD-TYPE" 
    TCGA-49-6744     TCGA-49-6745     TCGA-50-5044     TCGA-50-5045 
"EGFR WILD-TYPE" "EGFR WILD-TYPE" "EGFR WILD-TYPE" "EGFR WILD-TYPE" 
    TCGA-50-5049     TCGA-50-5051     TCGA-50-5055     TCGA-50-5066 
"EGFR WILD-TYPE" "EGFR WILD-TYPE" "EGFR WILD-TYPE" "EGFR WILD-TYPE" 
    TCGA-50-5068     TCGA-50-5072     TCGA-50-5930     TCGA-50-5931 
"EGFR WILD-TYPE" "EGFR WILD-TYPE" "EGFR WILD-TYPE" "EGFR WILD-TYPE" 
    TCGA-50-5932     TCGA-50-5933     TCGA-50-5935     TCGA-50-5936 
"EGFR WILD-TYPE" "EGFR WILD-TYPE" "EGFR WILD-TYPE" "EGFR WILD-TYPE" 
    TCGA-50-5939     TCGA-50-5941     TCGA-50-5942     TCGA-50-5944 
"EGFR WILD-TYPE" "EGFR WILD-TYPE" "EGFR WILD-TYPE"   "EGFR MUTATED" 
    TCGA-50-5946     TCGA-50-6590     TCGA-50-6591     TCGA-50-6592 
"EGFR WILD-TYPE" "EGFR WILD-TYPE"   "EGFR MUTATED" "EGFR WILD-TYPE" 
    TCGA-50-6593     TCGA-50-6594     TCGA-50-6595     TCGA-50-6597 
"EGFR WILD-TYPE" "EGFR WILD-TYPE"   "EGFR MUTATED" "EGFR WILD-TYPE" 
    TCGA-55-1592     TCGA-55-1594     TCGA-55-1595     TCGA-55-1596 
"EGFR WILD-TYPE" "EGFR WILD-TYPE" "EGFR WILD-TYPE" "EGFR WILD-TYPE" 
    TCGA-55-5899     TCGA-55-6543     TCGA-55-6642     TCGA-55-6712 
"EGFR WILD-TYPE" "EGFR WILD-TYPE" "EGFR WILD-TYPE" "EGFR WILD-TYPE" 
    TCGA-64-1676     TCGA-64-1677     TCGA-64-1678     TCGA-64-1680 
"EGFR WILD-TYPE" "EGFR WILD-TYPE" "EGFR WILD-TYPE" "EGFR WILD-TYPE" 
    TCGA-64-5774     TCGA-64-5775     TCGA-64-5778     TCGA-64-5779 
"EGFR WILD-TYPE" "EGFR WILD-TYPE" "EGFR WILD-TYPE" "EGFR WILD-TYPE" 
    TCGA-64-5781     TCGA-64-5815     TCGA-67-3770     TCGA-67-3771 
"EGFR WILD-TYPE" "EGFR WILD-TYPE"   "EGFR MUTATED" "EGFR WILD-TYPE" 
    TCGA-67-3772     TCGA-67-3773     TCGA-67-3774     TCGA-67-6215 
  "EGFR MUTATED" "EGFR WILD-TYPE" "EGFR WILD-TYPE" "EGFR WILD-TYPE" 
    TCGA-67-6216     TCGA-67-6217     TCGA-71-6725     TCGA-73-4658 
"EGFR WILD-TYPE"   "EGFR MUTATED" "EGFR WILD-TYPE" "EGFR WILD-TYPE" 
    TCGA-73-4659     TCGA-73-4662     TCGA-73-4666     TCGA-73-4668 
"EGFR WILD-TYPE" "EGFR WILD-TYPE" "EGFR WILD-TYPE" "EGFR WILD-TYPE" 
    TCGA-73-4670     TCGA-73-4675     TCGA-73-4676     TCGA-73-4677 
"EGFR WILD-TYPE" "EGFR WILD-TYPE" "EGFR WILD-TYPE" "EGFR WILD-TYPE" 
    TCGA-91-6828     TCGA-91-6829     TCGA-91-6831     TCGA-91-6835 
"EGFR WILD-TYPE" "EGFR WILD-TYPE" "EGFR WILD-TYPE"   "EGFR MUTATED" 
    TCGA-91-6836 
"EGFR WILD-TYPE" 
[1] "hr=" "2.3"
D224V2, continuous
D224V3, binary
[1] "tbl2"
                cls
clus             [,1] [,2]
  EGFR MUTATED     15    7
  EGFR WILD-TYPE   78   72
        clus
vv       EGFR MUTATED EGFR WILD-TYPE
  FEMALE           15             78
  MALE              7             72
D224V4, continuous
D224V5, multiclass
D224V6, multiclass
    clus
vv   EGFR MUTATED EGFR WILD-TYPE
  T1            5             36
  T2           13             95
  T3            3             11
  T4            1              7
D224V7, multiclass
       clus
vv      EGFR MUTATED EGFR WILD-TYPE
  N0               9             86
  N1               6             31
  N2+N3            5             30
D224V8, multiclass
    clus
vv   EGFR MUTATED EGFR WILD-TYPE
  M0           17            120
  M1            2              7
  MX            2             20
D224V9, multiclass
     clus
vv    EGFR MUTATED EGFR WILD-TYPE
  I              8             80
  II             6             27
  III            6             33
  IV             2              7
D224V10, binary
[1] "tbl2"
                cls
clus             [,1] [,2]
  EGFR MUTATED      1   21
  EGFR WILD-TYPE   15  135
     clus
vv    EGFR MUTATED EGFR WILD-TYPE
  NO             1             15
  YES           21            135
D224V11, continuous
D224V12, continuous
D224V13, multiclass
                                             clus
vv                                            EGFR MUTATED EGFR WILD-TYPE
  CURRENT REFORMED SMOKER FOR < OR = 15 YEARS            4             58
  CURRENT REFORMED SMOKER FOR > 15 YEARS                10             36
  CURRENT SMOKER                                         0             28
  LIFELONG NON-SMOKER                                    7             17
D224V14, continuous

Clustering(225) Variable = HOXA5 MUTATION ANALYSIS
D225V1, survival
                 sevent
clus2              0  1
  HOXA5 MUTATED    5  1
  HOXA5 WILD-TYPE 94 49
  HOXA5 MUTATED HOXA5 WILD-TYPE 
              6             143 
  HOXA5 MUTATED HOXA5 WILD-TYPE 
              1              49 
$`HOXA5 MUTATED`
TCGA-38-4625 TCGA-38-4629 TCGA-44-6144 TCGA-55-5899 TCGA-55-6642 TCGA-64-1676 
       47.61        28.37         0.30         2.86        32.61        56.81 

$`HOXA5 WILD-TYPE`
TCGA-05-4249 TCGA-05-4250 TCGA-05-4382 TCGA-05-4384 TCGA-05-4390 TCGA-05-4396 
       38.07         3.98        19.92        14.01        37.02         9.96 
TCGA-05-4397 TCGA-05-4398 TCGA-05-4402 TCGA-05-4405 TCGA-05-4415 TCGA-05-4417 
       24.03        47.05         8.02        20.05         2.96        14.93 
TCGA-05-4418 TCGA-05-4420 TCGA-05-4424 TCGA-05-4426 TCGA-05-4427 TCGA-05-4430 
        8.98        29.95        30.02        26.01        26.01        25.02 
TCGA-05-4432 TCGA-05-4433 TCGA-05-4434 TCGA-05-5420 TCGA-05-5423 TCGA-05-5425 
       25.02        24.00        15.02         1.02         4.96         2.96 
TCGA-05-5429 TCGA-05-5715 TCGA-35-3615 TCGA-35-4122 TCGA-35-4123 TCGA-35-5375 
        0.99         2.04         0.46         7.36         5.95         8.68 
TCGA-38-4626 TCGA-38-4627 TCGA-38-4628 TCGA-38-4630 TCGA-38-4631 TCGA-38-4632 
       85.32        37.71        49.02        35.28        11.64        44.61 
TCGA-38-6178 TCGA-44-2655 TCGA-44-2656 TCGA-44-2657 TCGA-44-2659 TCGA-44-2661 
        5.19        18.87        19.10        13.15        17.39         3.39 
TCGA-44-2662 TCGA-44-2665 TCGA-44-2666 TCGA-44-2668 TCGA-44-3396 TCGA-44-3398 
       15.78        13.15         3.19         8.09        10.22         8.32 
TCGA-44-3918 TCGA-44-3919 TCGA-44-4112 TCGA-44-5643 TCGA-44-5645 TCGA-44-6145 
        6.44         6.21         4.60         3.48         6.84         3.35 
TCGA-44-6146 TCGA-44-6147 TCGA-44-6148 TCGA-44-6774 TCGA-44-6775 TCGA-44-6776 
        9.93         7.76         3.12         5.42         2.70        63.72 
TCGA-44-6777 TCGA-44-6778 TCGA-44-6779 TCGA-49-4486 TCGA-49-4487 TCGA-49-4488 
       32.45        36.49        16.41        76.21        28.11        28.57 
TCGA-49-4490 TCGA-49-4494 TCGA-49-4501 TCGA-49-4505 TCGA-49-4506 TCGA-49-4507 
       12.66        35.54        46.72        14.07        32.84         8.81 
TCGA-49-4510 TCGA-49-4512 TCGA-49-4514 TCGA-49-6742 TCGA-49-6743 TCGA-49-6744 
       29.46        29.75        43.20        15.02        12.13        12.99 
TCGA-49-6745 TCGA-50-5044 TCGA-50-5045 TCGA-50-5049 TCGA-50-5051 TCGA-50-5055 
        4.93        20.48        71.47        48.82        14.96        25.81 
TCGA-50-5066 TCGA-50-5068 TCGA-50-5072 TCGA-50-5930 TCGA-50-5931 TCGA-50-5932 
        9.76        49.28         8.05         9.27         8.78        35.87 
TCGA-50-5933 TCGA-50-5935 TCGA-50-5936 TCGA-50-5939 TCGA-50-5941 TCGA-50-5942 
       77.88        21.47         8.45        15.12         9.37         4.44 
TCGA-50-5944 TCGA-50-5946 TCGA-50-6590 TCGA-50-6591 TCGA-50-6592 TCGA-50-6593 
       12.26        11.47        42.31         3.88        25.51        11.05 
TCGA-50-6594 TCGA-50-6595 TCGA-50-6597 TCGA-55-1592 TCGA-55-1594 TCGA-55-1595 
       12.16         6.21        33.37        23.05        38.73        48.62 
TCGA-55-1596 TCGA-55-6543 TCGA-55-6712 TCGA-64-1677 TCGA-64-1678 TCGA-64-1680 
       45.17         0.07         0.79        20.65        39.09        37.02 
TCGA-64-5774 TCGA-64-5775 TCGA-64-5778 TCGA-64-5779 TCGA-64-5781 TCGA-64-5815 
       83.84         0.10        30.44        16.67        39.52         7.33 
TCGA-67-3770 TCGA-67-3771 TCGA-67-3772 TCGA-67-3773 TCGA-67-3774 TCGA-67-6215 
        0.99         1.97         0.59         2.04         0.59         0.89 
TCGA-67-6216 TCGA-67-6217 TCGA-71-6725 TCGA-73-4658 TCGA-73-4659 TCGA-73-4662 
        0.69        13.87         2.01        52.57        23.38        29.95 
TCGA-73-4666 TCGA-73-4668 TCGA-73-4670 TCGA-73-4675 TCGA-73-4676 TCGA-73-4677 
       20.28        15.35         0.46         1.32         4.01         1.25 
TCGA-91-6828 TCGA-91-6829 TCGA-91-6831 TCGA-91-6835 TCGA-91-6836 
        1.22        41.33         1.28         1.15         0.36 

  HOXA5 MUTATED HOXA5 WILD-TYPE 
           0.30            0.07 
  HOXA5 MUTATED HOXA5 WILD-TYPE 
          56.81           85.32 
  HOXA5 MUTATED HOXA5 WILD-TYPE 
          30.49           13.15 
[1] "0.3 - 56.8 (30.5)" "0.1 - 85.3 (13.2)"
     TCGA-05-4249      TCGA-05-4250      TCGA-05-4382      TCGA-05-4384 
"HOXA5 WILD-TYPE" "HOXA5 WILD-TYPE" "HOXA5 WILD-TYPE" "HOXA5 WILD-TYPE" 
     TCGA-05-4390      TCGA-05-4396      TCGA-05-4397      TCGA-05-4398 
"HOXA5 WILD-TYPE" "HOXA5 WILD-TYPE" "HOXA5 WILD-TYPE" "HOXA5 WILD-TYPE" 
     TCGA-05-4402      TCGA-05-4405      TCGA-05-4415      TCGA-05-4417 
"HOXA5 WILD-TYPE" "HOXA5 WILD-TYPE" "HOXA5 WILD-TYPE" "HOXA5 WILD-TYPE" 
     TCGA-05-4418      TCGA-05-4420      TCGA-05-4424      TCGA-05-4426 
"HOXA5 WILD-TYPE" "HOXA5 WILD-TYPE" "HOXA5 WILD-TYPE" "HOXA5 WILD-TYPE" 
     TCGA-05-4427      TCGA-05-4430      TCGA-05-4432      TCGA-05-4433 
"HOXA5 WILD-TYPE" "HOXA5 WILD-TYPE" "HOXA5 WILD-TYPE" "HOXA5 WILD-TYPE" 
     TCGA-05-4434      TCGA-05-5420      TCGA-05-5423      TCGA-05-5425 
"HOXA5 WILD-TYPE" "HOXA5 WILD-TYPE" "HOXA5 WILD-TYPE" "HOXA5 WILD-TYPE" 
     TCGA-05-5429      TCGA-05-5715      TCGA-35-3615      TCGA-35-4122 
"HOXA5 WILD-TYPE" "HOXA5 WILD-TYPE" "HOXA5 WILD-TYPE" "HOXA5 WILD-TYPE" 
     TCGA-35-4123      TCGA-35-5375      TCGA-38-4625      TCGA-38-4626 
"HOXA5 WILD-TYPE" "HOXA5 WILD-TYPE"   "HOXA5 MUTATED" "HOXA5 WILD-TYPE" 
     TCGA-38-4627      TCGA-38-4628      TCGA-38-4629      TCGA-38-4630 
"HOXA5 WILD-TYPE" "HOXA5 WILD-TYPE"   "HOXA5 MUTATED" "HOXA5 WILD-TYPE" 
     TCGA-38-4631      TCGA-38-4632      TCGA-38-6178      TCGA-44-2655 
"HOXA5 WILD-TYPE" "HOXA5 WILD-TYPE" "HOXA5 WILD-TYPE" "HOXA5 WILD-TYPE" 
     TCGA-44-2656      TCGA-44-2657      TCGA-44-2659      TCGA-44-2661 
"HOXA5 WILD-TYPE" "HOXA5 WILD-TYPE" "HOXA5 WILD-TYPE" "HOXA5 WILD-TYPE" 
     TCGA-44-2662      TCGA-44-2665      TCGA-44-2666      TCGA-44-2668 
"HOXA5 WILD-TYPE" "HOXA5 WILD-TYPE" "HOXA5 WILD-TYPE" "HOXA5 WILD-TYPE" 
     TCGA-44-3396      TCGA-44-3398      TCGA-44-3918      TCGA-44-3919 
"HOXA5 WILD-TYPE" "HOXA5 WILD-TYPE" "HOXA5 WILD-TYPE" "HOXA5 WILD-TYPE" 
     TCGA-44-4112      TCGA-44-5643      TCGA-44-5645      TCGA-44-6144 
"HOXA5 WILD-TYPE" "HOXA5 WILD-TYPE" "HOXA5 WILD-TYPE"   "HOXA5 MUTATED" 
     TCGA-44-6145      TCGA-44-6146      TCGA-44-6147      TCGA-44-6148 
"HOXA5 WILD-TYPE" "HOXA5 WILD-TYPE" "HOXA5 WILD-TYPE" "HOXA5 WILD-TYPE" 
     TCGA-44-6774      TCGA-44-6775      TCGA-44-6776      TCGA-44-6777 
"HOXA5 WILD-TYPE" "HOXA5 WILD-TYPE" "HOXA5 WILD-TYPE" "HOXA5 WILD-TYPE" 
     TCGA-44-6778      TCGA-44-6779      TCGA-49-4486      TCGA-49-4487 
"HOXA5 WILD-TYPE" "HOXA5 WILD-TYPE" "HOXA5 WILD-TYPE" "HOXA5 WILD-TYPE" 
     TCGA-49-4488      TCGA-49-4490      TCGA-49-4494      TCGA-49-4501 
"HOXA5 WILD-TYPE" "HOXA5 WILD-TYPE" "HOXA5 WILD-TYPE" "HOXA5 WILD-TYPE" 
     TCGA-49-4505      TCGA-49-4506      TCGA-49-4507      TCGA-49-4510 
"HOXA5 WILD-TYPE" "HOXA5 WILD-TYPE" "HOXA5 WILD-TYPE" "HOXA5 WILD-TYPE" 
     TCGA-49-4512      TCGA-49-4514      TCGA-49-6742      TCGA-49-6743 
"HOXA5 WILD-TYPE" "HOXA5 WILD-TYPE" "HOXA5 WILD-TYPE" "HOXA5 WILD-TYPE" 
     TCGA-49-6744      TCGA-49-6745      TCGA-50-5044      TCGA-50-5045 
"HOXA5 WILD-TYPE" "HOXA5 WILD-TYPE" "HOXA5 WILD-TYPE" "HOXA5 WILD-TYPE" 
     TCGA-50-5049      TCGA-50-5051      TCGA-50-5055      TCGA-50-5066 
"HOXA5 WILD-TYPE" "HOXA5 WILD-TYPE" "HOXA5 WILD-TYPE" "HOXA5 WILD-TYPE" 
     TCGA-50-5068      TCGA-50-5072      TCGA-50-5930      TCGA-50-5931 
"HOXA5 WILD-TYPE" "HOXA5 WILD-TYPE" "HOXA5 WILD-TYPE" "HOXA5 WILD-TYPE" 
     TCGA-50-5932      TCGA-50-5933      TCGA-50-5935      TCGA-50-5936 
"HOXA5 WILD-TYPE" "HOXA5 WILD-TYPE" "HOXA5 WILD-TYPE" "HOXA5 WILD-TYPE" 
     TCGA-50-5939      TCGA-50-5941      TCGA-50-5942      TCGA-50-5944 
"HOXA5 WILD-TYPE" "HOXA5 WILD-TYPE" "HOXA5 WILD-TYPE" "HOXA5 WILD-TYPE" 
     TCGA-50-5946      TCGA-50-6590      TCGA-50-6591      TCGA-50-6592 
"HOXA5 WILD-TYPE" "HOXA5 WILD-TYPE" "HOXA5 WILD-TYPE" "HOXA5 WILD-TYPE" 
     TCGA-50-6593      TCGA-50-6594      TCGA-50-6595      TCGA-50-6597 
"HOXA5 WILD-TYPE" "HOXA5 WILD-TYPE" "HOXA5 WILD-TYPE" "HOXA5 WILD-TYPE" 
     TCGA-55-1592      TCGA-55-1594      TCGA-55-1595      TCGA-55-1596 
"HOXA5 WILD-TYPE" "HOXA5 WILD-TYPE" "HOXA5 WILD-TYPE" "HOXA5 WILD-TYPE" 
     TCGA-55-5899      TCGA-55-6543      TCGA-55-6642      TCGA-55-6712 
  "HOXA5 MUTATED" "HOXA5 WILD-TYPE"   "HOXA5 MUTATED" "HOXA5 WILD-TYPE" 
     TCGA-64-1676      TCGA-64-1677      TCGA-64-1678      TCGA-64-1680 
  "HOXA5 MUTATED" "HOXA5 WILD-TYPE" "HOXA5 WILD-TYPE" "HOXA5 WILD-TYPE" 
     TCGA-64-5774      TCGA-64-5775      TCGA-64-5778      TCGA-64-5779 
"HOXA5 WILD-TYPE" "HOXA5 WILD-TYPE" "HOXA5 WILD-TYPE" "HOXA5 WILD-TYPE" 
     TCGA-64-5781      TCGA-64-5815      TCGA-67-3770      TCGA-67-3771 
"HOXA5 WILD-TYPE" "HOXA5 WILD-TYPE" "HOXA5 WILD-TYPE" "HOXA5 WILD-TYPE" 
     TCGA-67-3772      TCGA-67-3773      TCGA-67-3774      TCGA-67-6215 
"HOXA5 WILD-TYPE" "HOXA5 WILD-TYPE" "HOXA5 WILD-TYPE" "HOXA5 WILD-TYPE" 
     TCGA-67-6216      TCGA-67-6217      TCGA-71-6725      TCGA-73-4658 
"HOXA5 WILD-TYPE" "HOXA5 WILD-TYPE" "HOXA5 WILD-TYPE" "HOXA5 WILD-TYPE" 
     TCGA-73-4659      TCGA-73-4662      TCGA-73-4666      TCGA-73-4668 
"HOXA5 WILD-TYPE" "HOXA5 WILD-TYPE" "HOXA5 WILD-TYPE" "HOXA5 WILD-TYPE" 
     TCGA-73-4670      TCGA-73-4675      TCGA-73-4676      TCGA-73-4677 
"HOXA5 WILD-TYPE" "HOXA5 WILD-TYPE" "HOXA5 WILD-TYPE" "HOXA5 WILD-TYPE" 
     TCGA-91-6828      TCGA-91-6829      TCGA-91-6831      TCGA-91-6835 
"HOXA5 WILD-TYPE" "HOXA5 WILD-TYPE" "HOXA5 WILD-TYPE" "HOXA5 WILD-TYPE" 
     TCGA-91-6836 
"HOXA5 WILD-TYPE" 
     TCGA-05-4249      TCGA-05-4250      TCGA-05-4382      TCGA-05-4384 
"HOXA5 WILD-TYPE" "HOXA5 WILD-TYPE" "HOXA5 WILD-TYPE" "HOXA5 WILD-TYPE" 
     TCGA-05-4390      TCGA-05-4396      TCGA-05-4397      TCGA-05-4398 
"HOXA5 WILD-TYPE" "HOXA5 WILD-TYPE" "HOXA5 WILD-TYPE" "HOXA5 WILD-TYPE" 
     TCGA-05-4402      TCGA-05-4405      TCGA-05-4415      TCGA-05-4417 
"HOXA5 WILD-TYPE" "HOXA5 WILD-TYPE" "HOXA5 WILD-TYPE" "HOXA5 WILD-TYPE" 
     TCGA-05-4418      TCGA-05-4420      TCGA-05-4424      TCGA-05-4426 
"HOXA5 WILD-TYPE" "HOXA5 WILD-TYPE" "HOXA5 WILD-TYPE" "HOXA5 WILD-TYPE" 
     TCGA-05-4427      TCGA-05-4430      TCGA-05-4432      TCGA-05-4433 
"HOXA5 WILD-TYPE" "HOXA5 WILD-TYPE" "HOXA5 WILD-TYPE" "HOXA5 WILD-TYPE" 
     TCGA-05-4434      TCGA-05-5420      TCGA-05-5423      TCGA-05-5425 
"HOXA5 WILD-TYPE" "HOXA5 WILD-TYPE" "HOXA5 WILD-TYPE" "HOXA5 WILD-TYPE" 
     TCGA-05-5429      TCGA-05-5715      TCGA-35-3615      TCGA-35-4122 
"HOXA5 WILD-TYPE" "HOXA5 WILD-TYPE" "HOXA5 WILD-TYPE" "HOXA5 WILD-TYPE" 
     TCGA-35-4123      TCGA-35-5375      TCGA-38-4625      TCGA-38-4626 
"HOXA5 WILD-TYPE" "HOXA5 WILD-TYPE"   "HOXA5 MUTATED" "HOXA5 WILD-TYPE" 
     TCGA-38-4627      TCGA-38-4628      TCGA-38-4629      TCGA-38-4630 
"HOXA5 WILD-TYPE" "HOXA5 WILD-TYPE"   "HOXA5 MUTATED" "HOXA5 WILD-TYPE" 
     TCGA-38-4631      TCGA-38-4632      TCGA-38-6178      TCGA-44-2655 
"HOXA5 WILD-TYPE" "HOXA5 WILD-TYPE" "HOXA5 WILD-TYPE" "HOXA5 WILD-TYPE" 
     TCGA-44-2656      TCGA-44-2657      TCGA-44-2659      TCGA-44-2661 
"HOXA5 WILD-TYPE" "HOXA5 WILD-TYPE" "HOXA5 WILD-TYPE" "HOXA5 WILD-TYPE" 
     TCGA-44-2662      TCGA-44-2665      TCGA-44-2666      TCGA-44-2668 
"HOXA5 WILD-TYPE" "HOXA5 WILD-TYPE" "HOXA5 WILD-TYPE" "HOXA5 WILD-TYPE" 
     TCGA-44-3396      TCGA-44-3398      TCGA-44-3918      TCGA-44-3919 
"HOXA5 WILD-TYPE" "HOXA5 WILD-TYPE" "HOXA5 WILD-TYPE" "HOXA5 WILD-TYPE" 
     TCGA-44-4112      TCGA-44-5643      TCGA-44-5645      TCGA-44-6144 
"HOXA5 WILD-TYPE" "HOXA5 WILD-TYPE" "HOXA5 WILD-TYPE"   "HOXA5 MUTATED" 
     TCGA-44-6145      TCGA-44-6146      TCGA-44-6147      TCGA-44-6148 
"HOXA5 WILD-TYPE" "HOXA5 WILD-TYPE" "HOXA5 WILD-TYPE" "HOXA5 WILD-TYPE" 
     TCGA-44-6774      TCGA-44-6775      TCGA-44-6776      TCGA-44-6777 
"HOXA5 WILD-TYPE" "HOXA5 WILD-TYPE" "HOXA5 WILD-TYPE" "HOXA5 WILD-TYPE" 
     TCGA-44-6778      TCGA-44-6779      TCGA-49-4486      TCGA-49-4487 
"HOXA5 WILD-TYPE" "HOXA5 WILD-TYPE" "HOXA5 WILD-TYPE" "HOXA5 WILD-TYPE" 
     TCGA-49-4488      TCGA-49-4490      TCGA-49-4494      TCGA-49-4501 
"HOXA5 WILD-TYPE" "HOXA5 WILD-TYPE" "HOXA5 WILD-TYPE" "HOXA5 WILD-TYPE" 
     TCGA-49-4505      TCGA-49-4506      TCGA-49-4507      TCGA-49-4510 
"HOXA5 WILD-TYPE" "HOXA5 WILD-TYPE" "HOXA5 WILD-TYPE" "HOXA5 WILD-TYPE" 
     TCGA-49-4512      TCGA-49-4514      TCGA-49-6742      TCGA-49-6743 
"HOXA5 WILD-TYPE" "HOXA5 WILD-TYPE" "HOXA5 WILD-TYPE" "HOXA5 WILD-TYPE" 
     TCGA-49-6744      TCGA-49-6745      TCGA-50-5044      TCGA-50-5045 
"HOXA5 WILD-TYPE" "HOXA5 WILD-TYPE" "HOXA5 WILD-TYPE" "HOXA5 WILD-TYPE" 
     TCGA-50-5049      TCGA-50-5051      TCGA-50-5055      TCGA-50-5066 
"HOXA5 WILD-TYPE" "HOXA5 WILD-TYPE" "HOXA5 WILD-TYPE" "HOXA5 WILD-TYPE" 
     TCGA-50-5068      TCGA-50-5072      TCGA-50-5930      TCGA-50-5931 
"HOXA5 WILD-TYPE" "HOXA5 WILD-TYPE" "HOXA5 WILD-TYPE" "HOXA5 WILD-TYPE" 
     TCGA-50-5932      TCGA-50-5933      TCGA-50-5935      TCGA-50-5936 
"HOXA5 WILD-TYPE" "HOXA5 WILD-TYPE" "HOXA5 WILD-TYPE" "HOXA5 WILD-TYPE" 
     TCGA-50-5939      TCGA-50-5941      TCGA-50-5942      TCGA-50-5944 
"HOXA5 WILD-TYPE" "HOXA5 WILD-TYPE" "HOXA5 WILD-TYPE" "HOXA5 WILD-TYPE" 
     TCGA-50-5946      TCGA-50-6590      TCGA-50-6591      TCGA-50-6592 
"HOXA5 WILD-TYPE" "HOXA5 WILD-TYPE" "HOXA5 WILD-TYPE" "HOXA5 WILD-TYPE" 
     TCGA-50-6593      TCGA-50-6594      TCGA-50-6595      TCGA-50-6597 
"HOXA5 WILD-TYPE" "HOXA5 WILD-TYPE" "HOXA5 WILD-TYPE" "HOXA5 WILD-TYPE" 
     TCGA-55-1592      TCGA-55-1594      TCGA-55-1595      TCGA-55-1596 
"HOXA5 WILD-TYPE" "HOXA5 WILD-TYPE" "HOXA5 WILD-TYPE" "HOXA5 WILD-TYPE" 
     TCGA-55-5899      TCGA-55-6543      TCGA-55-6642      TCGA-55-6712 
  "HOXA5 MUTATED" "HOXA5 WILD-TYPE"   "HOXA5 MUTATED" "HOXA5 WILD-TYPE" 
     TCGA-64-1676      TCGA-64-1677      TCGA-64-1678      TCGA-64-1680 
  "HOXA5 MUTATED" "HOXA5 WILD-TYPE" "HOXA5 WILD-TYPE" "HOXA5 WILD-TYPE" 
     TCGA-64-5774      TCGA-64-5775      TCGA-64-5778      TCGA-64-5779 
"HOXA5 WILD-TYPE" "HOXA5 WILD-TYPE" "HOXA5 WILD-TYPE" "HOXA5 WILD-TYPE" 
     TCGA-64-5781      TCGA-64-5815      TCGA-67-3770      TCGA-67-3771 
"HOXA5 WILD-TYPE" "HOXA5 WILD-TYPE" "HOXA5 WILD-TYPE" "HOXA5 WILD-TYPE" 
     TCGA-67-3772      TCGA-67-3773      TCGA-67-3774      TCGA-67-6215 
"HOXA5 WILD-TYPE" "HOXA5 WILD-TYPE" "HOXA5 WILD-TYPE" "HOXA5 WILD-TYPE" 
     TCGA-67-6216      TCGA-67-6217      TCGA-71-6725      TCGA-73-4658 
"HOXA5 WILD-TYPE" "HOXA5 WILD-TYPE" "HOXA5 WILD-TYPE" "HOXA5 WILD-TYPE" 
     TCGA-73-4659      TCGA-73-4662      TCGA-73-4666      TCGA-73-4668 
"HOXA5 WILD-TYPE" "HOXA5 WILD-TYPE" "HOXA5 WILD-TYPE" "HOXA5 WILD-TYPE" 
     TCGA-73-4670      TCGA-73-4675      TCGA-73-4676      TCGA-73-4677 
"HOXA5 WILD-TYPE" "HOXA5 WILD-TYPE" "HOXA5 WILD-TYPE" "HOXA5 WILD-TYPE" 
     TCGA-91-6828      TCGA-91-6829      TCGA-91-6831      TCGA-91-6835 
"HOXA5 WILD-TYPE" "HOXA5 WILD-TYPE" "HOXA5 WILD-TYPE" "HOXA5 WILD-TYPE" 
     TCGA-91-6836 
"HOXA5 WILD-TYPE" 
     TCGA-05-4249      TCGA-05-4250      TCGA-05-4382      TCGA-05-4384 
"HOXA5 WILD-TYPE" "HOXA5 WILD-TYPE" "HOXA5 WILD-TYPE" "HOXA5 WILD-TYPE" 
     TCGA-05-4390      TCGA-05-4396      TCGA-05-4397      TCGA-05-4398 
"HOXA5 WILD-TYPE" "HOXA5 WILD-TYPE" "HOXA5 WILD-TYPE" "HOXA5 WILD-TYPE" 
     TCGA-05-4402      TCGA-05-4405      TCGA-05-4415      TCGA-05-4417 
"HOXA5 WILD-TYPE" "HOXA5 WILD-TYPE" "HOXA5 WILD-TYPE" "HOXA5 WILD-TYPE" 
     TCGA-05-4418      TCGA-05-4420      TCGA-05-4424      TCGA-05-4426 
"HOXA5 WILD-TYPE" "HOXA5 WILD-TYPE" "HOXA5 WILD-TYPE" "HOXA5 WILD-TYPE" 
     TCGA-05-4427      TCGA-05-4430      TCGA-05-4432      TCGA-05-4433 
"HOXA5 WILD-TYPE" "HOXA5 WILD-TYPE" "HOXA5 WILD-TYPE" "HOXA5 WILD-TYPE" 
     TCGA-05-4434      TCGA-05-5420      TCGA-05-5423      TCGA-05-5425 
"HOXA5 WILD-TYPE" "HOXA5 WILD-TYPE" "HOXA5 WILD-TYPE" "HOXA5 WILD-TYPE" 
     TCGA-05-5429      TCGA-05-5715      TCGA-35-3615      TCGA-35-4122 
"HOXA5 WILD-TYPE" "HOXA5 WILD-TYPE" "HOXA5 WILD-TYPE" "HOXA5 WILD-TYPE" 
     TCGA-35-4123      TCGA-35-5375      TCGA-38-4625      TCGA-38-4626 
"HOXA5 WILD-TYPE" "HOXA5 WILD-TYPE"   "HOXA5 MUTATED" "HOXA5 WILD-TYPE" 
     TCGA-38-4627      TCGA-38-4628      TCGA-38-4629      TCGA-38-4630 
"HOXA5 WILD-TYPE" "HOXA5 WILD-TYPE"   "HOXA5 MUTATED" "HOXA5 WILD-TYPE" 
     TCGA-38-4631      TCGA-38-4632      TCGA-38-6178      TCGA-44-2655 
"HOXA5 WILD-TYPE" "HOXA5 WILD-TYPE" "HOXA5 WILD-TYPE" "HOXA5 WILD-TYPE" 
     TCGA-44-2656      TCGA-44-2657      TCGA-44-2659      TCGA-44-2661 
"HOXA5 WILD-TYPE" "HOXA5 WILD-TYPE" "HOXA5 WILD-TYPE" "HOXA5 WILD-TYPE" 
     TCGA-44-2662      TCGA-44-2665      TCGA-44-2666      TCGA-44-2668 
"HOXA5 WILD-TYPE" "HOXA5 WILD-TYPE" "HOXA5 WILD-TYPE" "HOXA5 WILD-TYPE" 
     TCGA-44-3396      TCGA-44-3398      TCGA-44-3918      TCGA-44-3919 
"HOXA5 WILD-TYPE" "HOXA5 WILD-TYPE" "HOXA5 WILD-TYPE" "HOXA5 WILD-TYPE" 
     TCGA-44-4112      TCGA-44-5643      TCGA-44-5645      TCGA-44-6144 
"HOXA5 WILD-TYPE" "HOXA5 WILD-TYPE" "HOXA5 WILD-TYPE"   "HOXA5 MUTATED" 
     TCGA-44-6145      TCGA-44-6146      TCGA-44-6147      TCGA-44-6148 
"HOXA5 WILD-TYPE" "HOXA5 WILD-TYPE" "HOXA5 WILD-TYPE" "HOXA5 WILD-TYPE" 
     TCGA-44-6774      TCGA-44-6775      TCGA-44-6776      TCGA-44-6777 
"HOXA5 WILD-TYPE" "HOXA5 WILD-TYPE" "HOXA5 WILD-TYPE" "HOXA5 WILD-TYPE" 
     TCGA-44-6778      TCGA-44-6779      TCGA-49-4486      TCGA-49-4487 
"HOXA5 WILD-TYPE" "HOXA5 WILD-TYPE" "HOXA5 WILD-TYPE" "HOXA5 WILD-TYPE" 
     TCGA-49-4488      TCGA-49-4490      TCGA-49-4494      TCGA-49-4501 
"HOXA5 WILD-TYPE" "HOXA5 WILD-TYPE" "HOXA5 WILD-TYPE" "HOXA5 WILD-TYPE" 
     TCGA-49-4505      TCGA-49-4506      TCGA-49-4507      TCGA-49-4510 
"HOXA5 WILD-TYPE" "HOXA5 WILD-TYPE" "HOXA5 WILD-TYPE" "HOXA5 WILD-TYPE" 
     TCGA-49-4512      TCGA-49-4514      TCGA-49-6742      TCGA-49-6743 
"HOXA5 WILD-TYPE" "HOXA5 WILD-TYPE" "HOXA5 WILD-TYPE" "HOXA5 WILD-TYPE" 
     TCGA-49-6744      TCGA-49-6745      TCGA-50-5044      TCGA-50-5045 
"HOXA5 WILD-TYPE" "HOXA5 WILD-TYPE" "HOXA5 WILD-TYPE" "HOXA5 WILD-TYPE" 
     TCGA-50-5049      TCGA-50-5051      TCGA-50-5055      TCGA-50-5066 
"HOXA5 WILD-TYPE" "HOXA5 WILD-TYPE" "HOXA5 WILD-TYPE" "HOXA5 WILD-TYPE" 
     TCGA-50-5068      TCGA-50-5072      TCGA-50-5930      TCGA-50-5931 
"HOXA5 WILD-TYPE" "HOXA5 WILD-TYPE" "HOXA5 WILD-TYPE" "HOXA5 WILD-TYPE" 
     TCGA-50-5932      TCGA-50-5933      TCGA-50-5935      TCGA-50-5936 
"HOXA5 WILD-TYPE" "HOXA5 WILD-TYPE" "HOXA5 WILD-TYPE" "HOXA5 WILD-TYPE" 
     TCGA-50-5939      TCGA-50-5941      TCGA-50-5942      TCGA-50-5944 
"HOXA5 WILD-TYPE" "HOXA5 WILD-TYPE" "HOXA5 WILD-TYPE" "HOXA5 WILD-TYPE" 
     TCGA-50-5946      TCGA-50-6590      TCGA-50-6591      TCGA-50-6592 
"HOXA5 WILD-TYPE" "HOXA5 WILD-TYPE" "HOXA5 WILD-TYPE" "HOXA5 WILD-TYPE" 
     TCGA-50-6593      TCGA-50-6594      TCGA-50-6595      TCGA-50-6597 
"HOXA5 WILD-TYPE" "HOXA5 WILD-TYPE" "HOXA5 WILD-TYPE" "HOXA5 WILD-TYPE" 
     TCGA-55-1592      TCGA-55-1594      TCGA-55-1595      TCGA-55-1596 
"HOXA5 WILD-TYPE" "HOXA5 WILD-TYPE" "HOXA5 WILD-TYPE" "HOXA5 WILD-TYPE" 
     TCGA-55-5899      TCGA-55-6543      TCGA-55-6642      TCGA-55-6712 
  "HOXA5 MUTATED" "HOXA5 WILD-TYPE"   "HOXA5 MUTATED" "HOXA5 WILD-TYPE" 
     TCGA-64-1676      TCGA-64-1677      TCGA-64-1678      TCGA-64-1680 
  "HOXA5 MUTATED" "HOXA5 WILD-TYPE" "HOXA5 WILD-TYPE" "HOXA5 WILD-TYPE" 
     TCGA-64-5774      TCGA-64-5775      TCGA-64-5778      TCGA-64-5779 
"HOXA5 WILD-TYPE" "HOXA5 WILD-TYPE" "HOXA5 WILD-TYPE" "HOXA5 WILD-TYPE" 
     TCGA-64-5781      TCGA-64-5815      TCGA-67-3770      TCGA-67-3771 
"HOXA5 WILD-TYPE" "HOXA5 WILD-TYPE" "HOXA5 WILD-TYPE" "HOXA5 WILD-TYPE" 
     TCGA-67-3772      TCGA-67-3773      TCGA-67-3774      TCGA-67-6215 
"HOXA5 WILD-TYPE" "HOXA5 WILD-TYPE" "HOXA5 WILD-TYPE" "HOXA5 WILD-TYPE" 
     TCGA-67-6216      TCGA-67-6217      TCGA-71-6725      TCGA-73-4658 
"HOXA5 WILD-TYPE" "HOXA5 WILD-TYPE" "HOXA5 WILD-TYPE" "HOXA5 WILD-TYPE" 
     TCGA-73-4659      TCGA-73-4662      TCGA-73-4666      TCGA-73-4668 
"HOXA5 WILD-TYPE" "HOXA5 WILD-TYPE" "HOXA5 WILD-TYPE" "HOXA5 WILD-TYPE" 
     TCGA-73-4670      TCGA-73-4675      TCGA-73-4676      TCGA-73-4677 
"HOXA5 WILD-TYPE" "HOXA5 WILD-TYPE" "HOXA5 WILD-TYPE" "HOXA5 WILD-TYPE" 
     TCGA-91-6828      TCGA-91-6829      TCGA-91-6831      TCGA-91-6835 
"HOXA5 WILD-TYPE" "HOXA5 WILD-TYPE" "HOXA5 WILD-TYPE" "HOXA5 WILD-TYPE" 
     TCGA-91-6836 
"HOXA5 WILD-TYPE" 
[1] "hr=" "3.3"
D225V2, continuous
D225V3, binary
[1] "tbl2"
                 cls
clus              [,1] [,2]
  HOXA5 MUTATED      1    5
  HOXA5 WILD-TYPE   92   74
        clus
vv       HOXA5 MUTATED HOXA5 WILD-TYPE
  FEMALE             1              92
  MALE               5              74
D225V4, continuous
D225V5, multiclass
D225V6, multiclass
    clus
vv   HOXA5 MUTATED HOXA5 WILD-TYPE
  T1             3              38
  T2             2             106
  T3             1              13
  T4             0               8
D225V7, multiclass
       clus
vv      HOXA5 MUTATED HOXA5 WILD-TYPE
  N0                5              90
  N1                1              36
  N2+N3             0              35
D225V8, multiclass
    clus
vv   HOXA5 MUTATED HOXA5 WILD-TYPE
  M0             5             132
  M1             0               9
  MX             1              21
D225V9, multiclass
     clus
vv    HOXA5 MUTATED HOXA5 WILD-TYPE
  I               5              83
  II              1              32
  III             0              39
  IV              0               9
D225V10, binary
[1] "tbl2"
                 cls
clus              [,1] [,2]
  HOXA5 MUTATED      0    6
  HOXA5 WILD-TYPE   16  150
     clus
vv    HOXA5 MUTATED HOXA5 WILD-TYPE
  NO              0              16
  YES             6             150
D225V11, continuous
D225V12, continuous
[1] "Remove cluster labels:" "HOXA5 MUTATED"         
clus
  HOXA5 MUTATED HOXA5 WILD-TYPE 
              1              81 
     TCGA-05-4384      TCGA-05-4390      TCGA-05-4396      TCGA-05-4403 
"HOXA5 WILD-TYPE" "HOXA5 WILD-TYPE" "HOXA5 WILD-TYPE" "HOXA5 WILD-TYPE" 
     TCGA-05-4405      TCGA-05-4410      TCGA-05-4415      TCGA-05-4417 
"HOXA5 WILD-TYPE" "HOXA5 WILD-TYPE" "HOXA5 WILD-TYPE" "HOXA5 WILD-TYPE" 
     TCGA-05-4424      TCGA-05-4427      TCGA-05-4433      TCGA-05-5420 
"HOXA5 WILD-TYPE" "HOXA5 WILD-TYPE" "HOXA5 WILD-TYPE" "HOXA5 WILD-TYPE" 
     TCGA-05-5423      TCGA-05-5425      TCGA-05-5428      TCGA-35-4122 
"HOXA5 WILD-TYPE" "HOXA5 WILD-TYPE" "HOXA5 WILD-TYPE" "HOXA5 WILD-TYPE" 
     TCGA-35-4123      TCGA-35-5375      TCGA-38-4632      TCGA-44-2655 
"HOXA5 WILD-TYPE" "HOXA5 WILD-TYPE" "HOXA5 WILD-TYPE" "HOXA5 WILD-TYPE" 
     TCGA-44-2656      TCGA-44-2657      TCGA-44-2659      TCGA-44-2662 
"HOXA5 WILD-TYPE" "HOXA5 WILD-TYPE" "HOXA5 WILD-TYPE" "HOXA5 WILD-TYPE" 
     TCGA-44-2668      TCGA-44-3398      TCGA-44-3918      TCGA-44-4112 
"HOXA5 WILD-TYPE" "HOXA5 WILD-TYPE" "HOXA5 WILD-TYPE" "HOXA5 WILD-TYPE" 
     TCGA-44-5645      TCGA-44-6145      TCGA-44-6146      TCGA-44-6147 
"HOXA5 WILD-TYPE" "HOXA5 WILD-TYPE" "HOXA5 WILD-TYPE" "HOXA5 WILD-TYPE" 
     TCGA-44-6148      TCGA-44-6775      TCGA-44-6776      TCGA-44-6777 
"HOXA5 WILD-TYPE" "HOXA5 WILD-TYPE" "HOXA5 WILD-TYPE" "HOXA5 WILD-TYPE" 
     TCGA-44-6778      TCGA-44-6779      TCGA-49-4486      TCGA-49-4488 
"HOXA5 WILD-TYPE" "HOXA5 WILD-TYPE" "HOXA5 WILD-TYPE" "HOXA5 WILD-TYPE" 
     TCGA-49-4494      TCGA-49-4505      TCGA-49-4507      TCGA-50-5051 
"HOXA5 WILD-TYPE" "HOXA5 WILD-TYPE" "HOXA5 WILD-TYPE" "HOXA5 WILD-TYPE" 
     TCGA-50-5072      TCGA-50-5939      TCGA-50-5942      TCGA-50-5946 
"HOXA5 WILD-TYPE" "HOXA5 WILD-TYPE" "HOXA5 WILD-TYPE" "HOXA5 WILD-TYPE" 
     TCGA-50-6590      TCGA-50-6594      TCGA-50-6595      TCGA-55-1592 
"HOXA5 WILD-TYPE" "HOXA5 WILD-TYPE" "HOXA5 WILD-TYPE" "HOXA5 WILD-TYPE" 
     TCGA-55-1595      TCGA-55-6543      TCGA-55-6712      TCGA-64-1678 
"HOXA5 WILD-TYPE" "HOXA5 WILD-TYPE" "HOXA5 WILD-TYPE" "HOXA5 WILD-TYPE" 
     TCGA-64-1680      TCGA-64-5774      TCGA-64-5778      TCGA-64-5779 
"HOXA5 WILD-TYPE" "HOXA5 WILD-TYPE" "HOXA5 WILD-TYPE" "HOXA5 WILD-TYPE" 
     TCGA-64-5781      TCGA-64-5815      TCGA-67-6217      TCGA-73-4659 
"HOXA5 WILD-TYPE" "HOXA5 WILD-TYPE" "HOXA5 WILD-TYPE" "HOXA5 WILD-TYPE" 
     TCGA-73-4662      TCGA-73-4666      TCGA-73-4668      TCGA-73-4670 
"HOXA5 WILD-TYPE" "HOXA5 WILD-TYPE" "HOXA5 WILD-TYPE" "HOXA5 WILD-TYPE" 
     TCGA-73-4675      TCGA-73-4676      TCGA-73-4677      TCGA-75-5122 
"HOXA5 WILD-TYPE" "HOXA5 WILD-TYPE" "HOXA5 WILD-TYPE" "HOXA5 WILD-TYPE" 
     TCGA-75-5125      TCGA-75-5126      TCGA-75-5146      TCGA-75-6206 
"HOXA5 WILD-TYPE" "HOXA5 WILD-TYPE" "HOXA5 WILD-TYPE" "HOXA5 WILD-TYPE" 
     TCGA-75-6207      TCGA-80-5611      TCGA-91-6828      TCGA-91-6829 
"HOXA5 WILD-TYPE" "HOXA5 WILD-TYPE" "HOXA5 WILD-TYPE" "HOXA5 WILD-TYPE" 
     TCGA-91-6835 
"HOXA5 WILD-TYPE" 
D225V13, multiclass
                                             clus
vv                                            HOXA5 MUTATED HOXA5 WILD-TYPE
  CURRENT REFORMED SMOKER FOR < OR = 15 YEARS             1              61
  CURRENT REFORMED SMOKER FOR > 15 YEARS                  0              46
  CURRENT SMOKER                                          5              23
  LIFELONG NON-SMOKER                                     0              24
D225V14, continuous

Clustering(226) Variable = SERPINB7 MUTATION ANALYSIS
D226V1, survival
                    sevent
clus2                 0  1
  SERPINB7 MUTATED    3  2
  SERPINB7 WILD-TYPE 96 48
  SERPINB7 MUTATED SERPINB7 WILD-TYPE 
                 5                144 
  SERPINB7 MUTATED SERPINB7 WILD-TYPE 
                 2                 48 
$`SERPINB7 MUTATED`
TCGA-05-4382 TCGA-05-4420 TCGA-49-4506 TCGA-50-6590 TCGA-64-1678 
       19.92        29.95        32.84        42.31        39.09 

$`SERPINB7 WILD-TYPE`
TCGA-05-4249 TCGA-05-4250 TCGA-05-4384 TCGA-05-4390 TCGA-05-4396 TCGA-05-4397 
       38.07         3.98        14.01        37.02         9.96        24.03 
TCGA-05-4398 TCGA-05-4402 TCGA-05-4405 TCGA-05-4415 TCGA-05-4417 TCGA-05-4418 
       47.05         8.02        20.05         2.96        14.93         8.98 
TCGA-05-4424 TCGA-05-4426 TCGA-05-4427 TCGA-05-4430 TCGA-05-4432 TCGA-05-4433 
       30.02        26.01        26.01        25.02        25.02        24.00 
TCGA-05-4434 TCGA-05-5420 TCGA-05-5423 TCGA-05-5425 TCGA-05-5429 TCGA-05-5715 
       15.02         1.02         4.96         2.96         0.99         2.04 
TCGA-35-3615 TCGA-35-4122 TCGA-35-4123 TCGA-35-5375 TCGA-38-4625 TCGA-38-4626 
        0.46         7.36         5.95         8.68        47.61        85.32 
TCGA-38-4627 TCGA-38-4628 TCGA-38-4629 TCGA-38-4630 TCGA-38-4631 TCGA-38-4632 
       37.71        49.02        28.37        35.28        11.64        44.61 
TCGA-38-6178 TCGA-44-2655 TCGA-44-2656 TCGA-44-2657 TCGA-44-2659 TCGA-44-2661 
        5.19        18.87        19.10        13.15        17.39         3.39 
TCGA-44-2662 TCGA-44-2665 TCGA-44-2666 TCGA-44-2668 TCGA-44-3396 TCGA-44-3398 
       15.78        13.15         3.19         8.09        10.22         8.32 
TCGA-44-3918 TCGA-44-3919 TCGA-44-4112 TCGA-44-5643 TCGA-44-5645 TCGA-44-6144 
        6.44         6.21         4.60         3.48         6.84         0.30 
TCGA-44-6145 TCGA-44-6146 TCGA-44-6147 TCGA-44-6148 TCGA-44-6774 TCGA-44-6775 
        3.35         9.93         7.76         3.12         5.42         2.70 
TCGA-44-6776 TCGA-44-6777 TCGA-44-6778 TCGA-44-6779 TCGA-49-4486 TCGA-49-4487 
       63.72        32.45        36.49        16.41        76.21        28.11 
TCGA-49-4488 TCGA-49-4490 TCGA-49-4494 TCGA-49-4501 TCGA-49-4505 TCGA-49-4507 
       28.57        12.66        35.54        46.72        14.07         8.81 
TCGA-49-4510 TCGA-49-4512 TCGA-49-4514 TCGA-49-6742 TCGA-49-6743 TCGA-49-6744 
       29.46        29.75        43.20        15.02        12.13        12.99 
TCGA-49-6745 TCGA-50-5044 TCGA-50-5045 TCGA-50-5049 TCGA-50-5051 TCGA-50-5055 
        4.93        20.48        71.47        48.82        14.96        25.81 
TCGA-50-5066 TCGA-50-5068 TCGA-50-5072 TCGA-50-5930 TCGA-50-5931 TCGA-50-5932 
        9.76        49.28         8.05         9.27         8.78        35.87 
TCGA-50-5933 TCGA-50-5935 TCGA-50-5936 TCGA-50-5939 TCGA-50-5941 TCGA-50-5942 
       77.88        21.47         8.45        15.12         9.37         4.44 
TCGA-50-5944 TCGA-50-5946 TCGA-50-6591 TCGA-50-6592 TCGA-50-6593 TCGA-50-6594 
       12.26        11.47         3.88        25.51        11.05        12.16 
TCGA-50-6595 TCGA-50-6597 TCGA-55-1592 TCGA-55-1594 TCGA-55-1595 TCGA-55-1596 
        6.21        33.37        23.05        38.73        48.62        45.17 
TCGA-55-5899 TCGA-55-6543 TCGA-55-6642 TCGA-55-6712 TCGA-64-1676 TCGA-64-1677 
        2.86         0.07        32.61         0.79        56.81        20.65 
TCGA-64-1680 TCGA-64-5774 TCGA-64-5775 TCGA-64-5778 TCGA-64-5779 TCGA-64-5781 
       37.02        83.84         0.10        30.44        16.67        39.52 
TCGA-64-5815 TCGA-67-3770 TCGA-67-3771 TCGA-67-3772 TCGA-67-3773 TCGA-67-3774 
        7.33         0.99         1.97         0.59         2.04         0.59 
TCGA-67-6215 TCGA-67-6216 TCGA-67-6217 TCGA-71-6725 TCGA-73-4658 TCGA-73-4659 
        0.89         0.69        13.87         2.01        52.57        23.38 
TCGA-73-4662 TCGA-73-4666 TCGA-73-4668 TCGA-73-4670 TCGA-73-4675 TCGA-73-4676 
       29.95        20.28        15.35         0.46         1.32         4.01 
TCGA-73-4677 TCGA-91-6828 TCGA-91-6829 TCGA-91-6831 TCGA-91-6835 TCGA-91-6836 
        1.25         1.22        41.33         1.28         1.15         0.36 

  SERPINB7 MUTATED SERPINB7 WILD-TYPE 
             19.92               0.07 
  SERPINB7 MUTATED SERPINB7 WILD-TYPE 
             42.31              85.32 
  SERPINB7 MUTATED SERPINB7 WILD-TYPE 
             32.84              13.07 
[1] "19.9 - 42.3 (32.8)" "0.1 - 85.3 (13.1)" 
        TCGA-05-4249         TCGA-05-4250         TCGA-05-4382 
"SERPINB7 WILD-TYPE" "SERPINB7 WILD-TYPE"   "SERPINB7 MUTATED" 
        TCGA-05-4384         TCGA-05-4390         TCGA-05-4396 
"SERPINB7 WILD-TYPE" "SERPINB7 WILD-TYPE" "SERPINB7 WILD-TYPE" 
        TCGA-05-4397         TCGA-05-4398         TCGA-05-4402 
"SERPINB7 WILD-TYPE" "SERPINB7 WILD-TYPE" "SERPINB7 WILD-TYPE" 
        TCGA-05-4405         TCGA-05-4415         TCGA-05-4417 
"SERPINB7 WILD-TYPE" "SERPINB7 WILD-TYPE" "SERPINB7 WILD-TYPE" 
        TCGA-05-4418         TCGA-05-4420         TCGA-05-4424 
"SERPINB7 WILD-TYPE"   "SERPINB7 MUTATED" "SERPINB7 WILD-TYPE" 
        TCGA-05-4426         TCGA-05-4427         TCGA-05-4430 
"SERPINB7 WILD-TYPE" "SERPINB7 WILD-TYPE" "SERPINB7 WILD-TYPE" 
        TCGA-05-4432         TCGA-05-4433         TCGA-05-4434 
"SERPINB7 WILD-TYPE" "SERPINB7 WILD-TYPE" "SERPINB7 WILD-TYPE" 
        TCGA-05-5420         TCGA-05-5423         TCGA-05-5425 
"SERPINB7 WILD-TYPE" "SERPINB7 WILD-TYPE" "SERPINB7 WILD-TYPE" 
        TCGA-05-5429         TCGA-05-5715         TCGA-35-3615 
"SERPINB7 WILD-TYPE" "SERPINB7 WILD-TYPE" "SERPINB7 WILD-TYPE" 
        TCGA-35-4122         TCGA-35-4123         TCGA-35-5375 
"SERPINB7 WILD-TYPE" "SERPINB7 WILD-TYPE" "SERPINB7 WILD-TYPE" 
        TCGA-38-4625         TCGA-38-4626         TCGA-38-4627 
"SERPINB7 WILD-TYPE" "SERPINB7 WILD-TYPE" "SERPINB7 WILD-TYPE" 
        TCGA-38-4628         TCGA-38-4629         TCGA-38-4630 
"SERPINB7 WILD-TYPE" "SERPINB7 WILD-TYPE" "SERPINB7 WILD-TYPE" 
        TCGA-38-4631         TCGA-38-4632         TCGA-38-6178 
"SERPINB7 WILD-TYPE" "SERPINB7 WILD-TYPE" "SERPINB7 WILD-TYPE" 
        TCGA-44-2655         TCGA-44-2656         TCGA-44-2657 
"SERPINB7 WILD-TYPE" "SERPINB7 WILD-TYPE" "SERPINB7 WILD-TYPE" 
        TCGA-44-2659         TCGA-44-2661         TCGA-44-2662 
"SERPINB7 WILD-TYPE" "SERPINB7 WILD-TYPE" "SERPINB7 WILD-TYPE" 
        TCGA-44-2665         TCGA-44-2666         TCGA-44-2668 
"SERPINB7 WILD-TYPE" "SERPINB7 WILD-TYPE" "SERPINB7 WILD-TYPE" 
        TCGA-44-3396         TCGA-44-3398         TCGA-44-3918 
"SERPINB7 WILD-TYPE" "SERPINB7 WILD-TYPE" "SERPINB7 WILD-TYPE" 
        TCGA-44-3919         TCGA-44-4112         TCGA-44-5643 
"SERPINB7 WILD-TYPE" "SERPINB7 WILD-TYPE" "SERPINB7 WILD-TYPE" 
        TCGA-44-5645         TCGA-44-6144         TCGA-44-6145 
"SERPINB7 WILD-TYPE" "SERPINB7 WILD-TYPE" "SERPINB7 WILD-TYPE" 
        TCGA-44-6146         TCGA-44-6147         TCGA-44-6148 
"SERPINB7 WILD-TYPE" "SERPINB7 WILD-TYPE" "SERPINB7 WILD-TYPE" 
        TCGA-44-6774         TCGA-44-6775         TCGA-44-6776 
"SERPINB7 WILD-TYPE" "SERPINB7 WILD-TYPE" "SERPINB7 WILD-TYPE" 
        TCGA-44-6777         TCGA-44-6778         TCGA-44-6779 
"SERPINB7 WILD-TYPE" "SERPINB7 WILD-TYPE" "SERPINB7 WILD-TYPE" 
        TCGA-49-4486         TCGA-49-4487         TCGA-49-4488 
"SERPINB7 WILD-TYPE" "SERPINB7 WILD-TYPE" "SERPINB7 WILD-TYPE" 
        TCGA-49-4490         TCGA-49-4494         TCGA-49-4501 
"SERPINB7 WILD-TYPE" "SERPINB7 WILD-TYPE" "SERPINB7 WILD-TYPE" 
        TCGA-49-4505         TCGA-49-4506         TCGA-49-4507 
"SERPINB7 WILD-TYPE"   "SERPINB7 MUTATED" "SERPINB7 WILD-TYPE" 
        TCGA-49-4510         TCGA-49-4512         TCGA-49-4514 
"SERPINB7 WILD-TYPE" "SERPINB7 WILD-TYPE" "SERPINB7 WILD-TYPE" 
        TCGA-49-6742         TCGA-49-6743         TCGA-49-6744 
"SERPINB7 WILD-TYPE" "SERPINB7 WILD-TYPE" "SERPINB7 WILD-TYPE" 
        TCGA-49-6745         TCGA-50-5044         TCGA-50-5045 
"SERPINB7 WILD-TYPE" "SERPINB7 WILD-TYPE" "SERPINB7 WILD-TYPE" 
        TCGA-50-5049         TCGA-50-5051         TCGA-50-5055 
"SERPINB7 WILD-TYPE" "SERPINB7 WILD-TYPE" "SERPINB7 WILD-TYPE" 
        TCGA-50-5066         TCGA-50-5068         TCGA-50-5072 
"SERPINB7 WILD-TYPE" "SERPINB7 WILD-TYPE" "SERPINB7 WILD-TYPE" 
        TCGA-50-5930         TCGA-50-5931         TCGA-50-5932 
"SERPINB7 WILD-TYPE" "SERPINB7 WILD-TYPE" "SERPINB7 WILD-TYPE" 
        TCGA-50-5933         TCGA-50-5935         TCGA-50-5936 
"SERPINB7 WILD-TYPE" "SERPINB7 WILD-TYPE" "SERPINB7 WILD-TYPE" 
        TCGA-50-5939         TCGA-50-5941         TCGA-50-5942 
"SERPINB7 WILD-TYPE" "SERPINB7 WILD-TYPE" "SERPINB7 WILD-TYPE" 
        TCGA-50-5944         TCGA-50-5946         TCGA-50-6590 
"SERPINB7 WILD-TYPE" "SERPINB7 WILD-TYPE"   "SERPINB7 MUTATED" 
        TCGA-50-6591         TCGA-50-6592         TCGA-50-6593 
"SERPINB7 WILD-TYPE" "SERPINB7 WILD-TYPE" "SERPINB7 WILD-TYPE" 
        TCGA-50-6594         TCGA-50-6595         TCGA-50-6597 
"SERPINB7 WILD-TYPE" "SERPINB7 WILD-TYPE" "SERPINB7 WILD-TYPE" 
        TCGA-55-1592         TCGA-55-1594         TCGA-55-1595 
"SERPINB7 WILD-TYPE" "SERPINB7 WILD-TYPE" "SERPINB7 WILD-TYPE" 
        TCGA-55-1596         TCGA-55-5899         TCGA-55-6543 
"SERPINB7 WILD-TYPE" "SERPINB7 WILD-TYPE" "SERPINB7 WILD-TYPE" 
        TCGA-55-6642         TCGA-55-6712         TCGA-64-1676 
"SERPINB7 WILD-TYPE" "SERPINB7 WILD-TYPE" "SERPINB7 WILD-TYPE" 
        TCGA-64-1677         TCGA-64-1678         TCGA-64-1680 
"SERPINB7 WILD-TYPE"   "SERPINB7 MUTATED" "SERPINB7 WILD-TYPE" 
        TCGA-64-5774         TCGA-64-5775         TCGA-64-5778 
"SERPINB7 WILD-TYPE" "SERPINB7 WILD-TYPE" "SERPINB7 WILD-TYPE" 
        TCGA-64-5779         TCGA-64-5781         TCGA-64-5815 
"SERPINB7 WILD-TYPE" "SERPINB7 WILD-TYPE" "SERPINB7 WILD-TYPE" 
        TCGA-67-3770         TCGA-67-3771         TCGA-67-3772 
"SERPINB7 WILD-TYPE" "SERPINB7 WILD-TYPE" "SERPINB7 WILD-TYPE" 
        TCGA-67-3773         TCGA-67-3774         TCGA-67-6215 
"SERPINB7 WILD-TYPE" "SERPINB7 WILD-TYPE" "SERPINB7 WILD-TYPE" 
        TCGA-67-6216         TCGA-67-6217         TCGA-71-6725 
"SERPINB7 WILD-TYPE" "SERPINB7 WILD-TYPE" "SERPINB7 WILD-TYPE" 
        TCGA-73-4658         TCGA-73-4659         TCGA-73-4662 
"SERPINB7 WILD-TYPE" "SERPINB7 WILD-TYPE" "SERPINB7 WILD-TYPE" 
        TCGA-73-4666         TCGA-73-4668         TCGA-73-4670 
"SERPINB7 WILD-TYPE" "SERPINB7 WILD-TYPE" "SERPINB7 WILD-TYPE" 
        TCGA-73-4675         TCGA-73-4676         TCGA-73-4677 
"SERPINB7 WILD-TYPE" "SERPINB7 WILD-TYPE" "SERPINB7 WILD-TYPE" 
        TCGA-91-6828         TCGA-91-6829         TCGA-91-6831 
"SERPINB7 WILD-TYPE" "SERPINB7 WILD-TYPE" "SERPINB7 WILD-TYPE" 
        TCGA-91-6835         TCGA-91-6836 
"SERPINB7 WILD-TYPE" "SERPINB7 WILD-TYPE" 
        TCGA-05-4249         TCGA-05-4250         TCGA-05-4382 
"SERPINB7 WILD-TYPE" "SERPINB7 WILD-TYPE"   "SERPINB7 MUTATED" 
        TCGA-05-4384         TCGA-05-4390         TCGA-05-4396 
"SERPINB7 WILD-TYPE" "SERPINB7 WILD-TYPE" "SERPINB7 WILD-TYPE" 
        TCGA-05-4397         TCGA-05-4398         TCGA-05-4402 
"SERPINB7 WILD-TYPE" "SERPINB7 WILD-TYPE" "SERPINB7 WILD-TYPE" 
        TCGA-05-4405         TCGA-05-4415         TCGA-05-4417 
"SERPINB7 WILD-TYPE" "SERPINB7 WILD-TYPE" "SERPINB7 WILD-TYPE" 
        TCGA-05-4418         TCGA-05-4420         TCGA-05-4424 
"SERPINB7 WILD-TYPE"   "SERPINB7 MUTATED" "SERPINB7 WILD-TYPE" 
        TCGA-05-4426         TCGA-05-4427         TCGA-05-4430 
"SERPINB7 WILD-TYPE" "SERPINB7 WILD-TYPE" "SERPINB7 WILD-TYPE" 
        TCGA-05-4432         TCGA-05-4433         TCGA-05-4434 
"SERPINB7 WILD-TYPE" "SERPINB7 WILD-TYPE" "SERPINB7 WILD-TYPE" 
        TCGA-05-5420         TCGA-05-5423         TCGA-05-5425 
"SERPINB7 WILD-TYPE" "SERPINB7 WILD-TYPE" "SERPINB7 WILD-TYPE" 
        TCGA-05-5429         TCGA-05-5715         TCGA-35-3615 
"SERPINB7 WILD-TYPE" "SERPINB7 WILD-TYPE" "SERPINB7 WILD-TYPE" 
        TCGA-35-4122         TCGA-35-4123         TCGA-35-5375 
"SERPINB7 WILD-TYPE" "SERPINB7 WILD-TYPE" "SERPINB7 WILD-TYPE" 
        TCGA-38-4625         TCGA-38-4626         TCGA-38-4627 
"SERPINB7 WILD-TYPE" "SERPINB7 WILD-TYPE" "SERPINB7 WILD-TYPE" 
        TCGA-38-4628         TCGA-38-4629         TCGA-38-4630 
"SERPINB7 WILD-TYPE" "SERPINB7 WILD-TYPE" "SERPINB7 WILD-TYPE" 
        TCGA-38-4631         TCGA-38-4632         TCGA-38-6178 
"SERPINB7 WILD-TYPE" "SERPINB7 WILD-TYPE" "SERPINB7 WILD-TYPE" 
        TCGA-44-2655         TCGA-44-2656         TCGA-44-2657 
"SERPINB7 WILD-TYPE" "SERPINB7 WILD-TYPE" "SERPINB7 WILD-TYPE" 
        TCGA-44-2659         TCGA-44-2661         TCGA-44-2662 
"SERPINB7 WILD-TYPE" "SERPINB7 WILD-TYPE" "SERPINB7 WILD-TYPE" 
        TCGA-44-2665         TCGA-44-2666         TCGA-44-2668 
"SERPINB7 WILD-TYPE" "SERPINB7 WILD-TYPE" "SERPINB7 WILD-TYPE" 
        TCGA-44-3396         TCGA-44-3398         TCGA-44-3918 
"SERPINB7 WILD-TYPE" "SERPINB7 WILD-TYPE" "SERPINB7 WILD-TYPE" 
        TCGA-44-3919         TCGA-44-4112         TCGA-44-5643 
"SERPINB7 WILD-TYPE" "SERPINB7 WILD-TYPE" "SERPINB7 WILD-TYPE" 
        TCGA-44-5645         TCGA-44-6144         TCGA-44-6145 
"SERPINB7 WILD-TYPE" "SERPINB7 WILD-TYPE" "SERPINB7 WILD-TYPE" 
        TCGA-44-6146         TCGA-44-6147         TCGA-44-6148 
"SERPINB7 WILD-TYPE" "SERPINB7 WILD-TYPE" "SERPINB7 WILD-TYPE" 
        TCGA-44-6774         TCGA-44-6775         TCGA-44-6776 
"SERPINB7 WILD-TYPE" "SERPINB7 WILD-TYPE" "SERPINB7 WILD-TYPE" 
        TCGA-44-6777         TCGA-44-6778         TCGA-44-6779 
"SERPINB7 WILD-TYPE" "SERPINB7 WILD-TYPE" "SERPINB7 WILD-TYPE" 
        TCGA-49-4486         TCGA-49-4487         TCGA-49-4488 
"SERPINB7 WILD-TYPE" "SERPINB7 WILD-TYPE" "SERPINB7 WILD-TYPE" 
        TCGA-49-4490         TCGA-49-4494         TCGA-49-4501 
"SERPINB7 WILD-TYPE" "SERPINB7 WILD-TYPE" "SERPINB7 WILD-TYPE" 
        TCGA-49-4505         TCGA-49-4506         TCGA-49-4507 
"SERPINB7 WILD-TYPE"   "SERPINB7 MUTATED" "SERPINB7 WILD-TYPE" 
        TCGA-49-4510         TCGA-49-4512         TCGA-49-4514 
"SERPINB7 WILD-TYPE" "SERPINB7 WILD-TYPE" "SERPINB7 WILD-TYPE" 
        TCGA-49-6742         TCGA-49-6743         TCGA-49-6744 
"SERPINB7 WILD-TYPE" "SERPINB7 WILD-TYPE" "SERPINB7 WILD-TYPE" 
        TCGA-49-6745         TCGA-50-5044         TCGA-50-5045 
"SERPINB7 WILD-TYPE" "SERPINB7 WILD-TYPE" "SERPINB7 WILD-TYPE" 
        TCGA-50-5049         TCGA-50-5051         TCGA-50-5055 
"SERPINB7 WILD-TYPE" "SERPINB7 WILD-TYPE" "SERPINB7 WILD-TYPE" 
        TCGA-50-5066         TCGA-50-5068         TCGA-50-5072 
"SERPINB7 WILD-TYPE" "SERPINB7 WILD-TYPE" "SERPINB7 WILD-TYPE" 
        TCGA-50-5930         TCGA-50-5931         TCGA-50-5932 
"SERPINB7 WILD-TYPE" "SERPINB7 WILD-TYPE" "SERPINB7 WILD-TYPE" 
        TCGA-50-5933         TCGA-50-5935         TCGA-50-5936 
"SERPINB7 WILD-TYPE" "SERPINB7 WILD-TYPE" "SERPINB7 WILD-TYPE" 
        TCGA-50-5939         TCGA-50-5941         TCGA-50-5942 
"SERPINB7 WILD-TYPE" "SERPINB7 WILD-TYPE" "SERPINB7 WILD-TYPE" 
        TCGA-50-5944         TCGA-50-5946         TCGA-50-6590 
"SERPINB7 WILD-TYPE" "SERPINB7 WILD-TYPE"   "SERPINB7 MUTATED" 
        TCGA-50-6591         TCGA-50-6592         TCGA-50-6593 
"SERPINB7 WILD-TYPE" "SERPINB7 WILD-TYPE" "SERPINB7 WILD-TYPE" 
        TCGA-50-6594         TCGA-50-6595         TCGA-50-6597 
"SERPINB7 WILD-TYPE" "SERPINB7 WILD-TYPE" "SERPINB7 WILD-TYPE" 
        TCGA-55-1592         TCGA-55-1594         TCGA-55-1595 
"SERPINB7 WILD-TYPE" "SERPINB7 WILD-TYPE" "SERPINB7 WILD-TYPE" 
        TCGA-55-1596         TCGA-55-5899         TCGA-55-6543 
"SERPINB7 WILD-TYPE" "SERPINB7 WILD-TYPE" "SERPINB7 WILD-TYPE" 
        TCGA-55-6642         TCGA-55-6712         TCGA-64-1676 
"SERPINB7 WILD-TYPE" "SERPINB7 WILD-TYPE" "SERPINB7 WILD-TYPE" 
        TCGA-64-1677         TCGA-64-1678         TCGA-64-1680 
"SERPINB7 WILD-TYPE"   "SERPINB7 MUTATED" "SERPINB7 WILD-TYPE" 
        TCGA-64-5774         TCGA-64-5775         TCGA-64-5778 
"SERPINB7 WILD-TYPE" "SERPINB7 WILD-TYPE" "SERPINB7 WILD-TYPE" 
        TCGA-64-5779         TCGA-64-5781         TCGA-64-5815 
"SERPINB7 WILD-TYPE" "SERPINB7 WILD-TYPE" "SERPINB7 WILD-TYPE" 
        TCGA-67-3770         TCGA-67-3771         TCGA-67-3772 
"SERPINB7 WILD-TYPE" "SERPINB7 WILD-TYPE" "SERPINB7 WILD-TYPE" 
        TCGA-67-3773         TCGA-67-3774         TCGA-67-6215 
"SERPINB7 WILD-TYPE" "SERPINB7 WILD-TYPE" "SERPINB7 WILD-TYPE" 
        TCGA-67-6216         TCGA-67-6217         TCGA-71-6725 
"SERPINB7 WILD-TYPE" "SERPINB7 WILD-TYPE" "SERPINB7 WILD-TYPE" 
        TCGA-73-4658         TCGA-73-4659         TCGA-73-4662 
"SERPINB7 WILD-TYPE" "SERPINB7 WILD-TYPE" "SERPINB7 WILD-TYPE" 
        TCGA-73-4666         TCGA-73-4668         TCGA-73-4670 
"SERPINB7 WILD-TYPE" "SERPINB7 WILD-TYPE" "SERPINB7 WILD-TYPE" 
        TCGA-73-4675         TCGA-73-4676         TCGA-73-4677 
"SERPINB7 WILD-TYPE" "SERPINB7 WILD-TYPE" "SERPINB7 WILD-TYPE" 
        TCGA-91-6828         TCGA-91-6829         TCGA-91-6831 
"SERPINB7 WILD-TYPE" "SERPINB7 WILD-TYPE" "SERPINB7 WILD-TYPE" 
        TCGA-91-6835         TCGA-91-6836 
"SERPINB7 WILD-TYPE" "SERPINB7 WILD-TYPE" 
        TCGA-05-4249         TCGA-05-4250         TCGA-05-4382 
"SERPINB7 WILD-TYPE" "SERPINB7 WILD-TYPE"   "SERPINB7 MUTATED" 
        TCGA-05-4384         TCGA-05-4390         TCGA-05-4396 
"SERPINB7 WILD-TYPE" "SERPINB7 WILD-TYPE" "SERPINB7 WILD-TYPE" 
        TCGA-05-4397         TCGA-05-4398         TCGA-05-4402 
"SERPINB7 WILD-TYPE" "SERPINB7 WILD-TYPE" "SERPINB7 WILD-TYPE" 
        TCGA-05-4405         TCGA-05-4415         TCGA-05-4417 
"SERPINB7 WILD-TYPE" "SERPINB7 WILD-TYPE" "SERPINB7 WILD-TYPE" 
        TCGA-05-4418         TCGA-05-4420         TCGA-05-4424 
"SERPINB7 WILD-TYPE"   "SERPINB7 MUTATED" "SERPINB7 WILD-TYPE" 
        TCGA-05-4426         TCGA-05-4427         TCGA-05-4430 
"SERPINB7 WILD-TYPE" "SERPINB7 WILD-TYPE" "SERPINB7 WILD-TYPE" 
        TCGA-05-4432         TCGA-05-4433         TCGA-05-4434 
"SERPINB7 WILD-TYPE" "SERPINB7 WILD-TYPE" "SERPINB7 WILD-TYPE" 
        TCGA-05-5420         TCGA-05-5423         TCGA-05-5425 
"SERPINB7 WILD-TYPE" "SERPINB7 WILD-TYPE" "SERPINB7 WILD-TYPE" 
        TCGA-05-5429         TCGA-05-5715         TCGA-35-3615 
"SERPINB7 WILD-TYPE" "SERPINB7 WILD-TYPE" "SERPINB7 WILD-TYPE" 
        TCGA-35-4122         TCGA-35-4123         TCGA-35-5375 
"SERPINB7 WILD-TYPE" "SERPINB7 WILD-TYPE" "SERPINB7 WILD-TYPE" 
        TCGA-38-4625         TCGA-38-4626         TCGA-38-4627 
"SERPINB7 WILD-TYPE" "SERPINB7 WILD-TYPE" "SERPINB7 WILD-TYPE" 
        TCGA-38-4628         TCGA-38-4629         TCGA-38-4630 
"SERPINB7 WILD-TYPE" "SERPINB7 WILD-TYPE" "SERPINB7 WILD-TYPE" 
        TCGA-38-4631         TCGA-38-4632         TCGA-38-6178 
"SERPINB7 WILD-TYPE" "SERPINB7 WILD-TYPE" "SERPINB7 WILD-TYPE" 
        TCGA-44-2655         TCGA-44-2656         TCGA-44-2657 
"SERPINB7 WILD-TYPE" "SERPINB7 WILD-TYPE" "SERPINB7 WILD-TYPE" 
        TCGA-44-2659         TCGA-44-2661         TCGA-44-2662 
"SERPINB7 WILD-TYPE" "SERPINB7 WILD-TYPE" "SERPINB7 WILD-TYPE" 
        TCGA-44-2665         TCGA-44-2666         TCGA-44-2668 
"SERPINB7 WILD-TYPE" "SERPINB7 WILD-TYPE" "SERPINB7 WILD-TYPE" 
        TCGA-44-3396         TCGA-44-3398         TCGA-44-3918 
"SERPINB7 WILD-TYPE" "SERPINB7 WILD-TYPE" "SERPINB7 WILD-TYPE" 
        TCGA-44-3919         TCGA-44-4112         TCGA-44-5643 
"SERPINB7 WILD-TYPE" "SERPINB7 WILD-TYPE" "SERPINB7 WILD-TYPE" 
        TCGA-44-5645         TCGA-44-6144         TCGA-44-6145 
"SERPINB7 WILD-TYPE" "SERPINB7 WILD-TYPE" "SERPINB7 WILD-TYPE" 
        TCGA-44-6146         TCGA-44-6147         TCGA-44-6148 
"SERPINB7 WILD-TYPE" "SERPINB7 WILD-TYPE" "SERPINB7 WILD-TYPE" 
        TCGA-44-6774         TCGA-44-6775         TCGA-44-6776 
"SERPINB7 WILD-TYPE" "SERPINB7 WILD-TYPE" "SERPINB7 WILD-TYPE" 
        TCGA-44-6777         TCGA-44-6778         TCGA-44-6779 
"SERPINB7 WILD-TYPE" "SERPINB7 WILD-TYPE" "SERPINB7 WILD-TYPE" 
        TCGA-49-4486         TCGA-49-4487         TCGA-49-4488 
"SERPINB7 WILD-TYPE" "SERPINB7 WILD-TYPE" "SERPINB7 WILD-TYPE" 
        TCGA-49-4490         TCGA-49-4494         TCGA-49-4501 
"SERPINB7 WILD-TYPE" "SERPINB7 WILD-TYPE" "SERPINB7 WILD-TYPE" 
        TCGA-49-4505         TCGA-49-4506         TCGA-49-4507 
"SERPINB7 WILD-TYPE"   "SERPINB7 MUTATED" "SERPINB7 WILD-TYPE" 
        TCGA-49-4510         TCGA-49-4512         TCGA-49-4514 
"SERPINB7 WILD-TYPE" "SERPINB7 WILD-TYPE" "SERPINB7 WILD-TYPE" 
        TCGA-49-6742         TCGA-49-6743         TCGA-49-6744 
"SERPINB7 WILD-TYPE" "SERPINB7 WILD-TYPE" "SERPINB7 WILD-TYPE" 
        TCGA-49-6745         TCGA-50-5044         TCGA-50-5045 
"SERPINB7 WILD-TYPE" "SERPINB7 WILD-TYPE" "SERPINB7 WILD-TYPE" 
        TCGA-50-5049         TCGA-50-5051         TCGA-50-5055 
"SERPINB7 WILD-TYPE" "SERPINB7 WILD-TYPE" "SERPINB7 WILD-TYPE" 
        TCGA-50-5066         TCGA-50-5068         TCGA-50-5072 
"SERPINB7 WILD-TYPE" "SERPINB7 WILD-TYPE" "SERPINB7 WILD-TYPE" 
        TCGA-50-5930         TCGA-50-5931         TCGA-50-5932 
"SERPINB7 WILD-TYPE" "SERPINB7 WILD-TYPE" "SERPINB7 WILD-TYPE" 
        TCGA-50-5933         TCGA-50-5935         TCGA-50-5936 
"SERPINB7 WILD-TYPE" "SERPINB7 WILD-TYPE" "SERPINB7 WILD-TYPE" 
        TCGA-50-5939         TCGA-50-5941         TCGA-50-5942 
"SERPINB7 WILD-TYPE" "SERPINB7 WILD-TYPE" "SERPINB7 WILD-TYPE" 
        TCGA-50-5944         TCGA-50-5946         TCGA-50-6590 
"SERPINB7 WILD-TYPE" "SERPINB7 WILD-TYPE"   "SERPINB7 MUTATED" 
        TCGA-50-6591         TCGA-50-6592         TCGA-50-6593 
"SERPINB7 WILD-TYPE" "SERPINB7 WILD-TYPE" "SERPINB7 WILD-TYPE" 
        TCGA-50-6594         TCGA-50-6595         TCGA-50-6597 
"SERPINB7 WILD-TYPE" "SERPINB7 WILD-TYPE" "SERPINB7 WILD-TYPE" 
        TCGA-55-1592         TCGA-55-1594         TCGA-55-1595 
"SERPINB7 WILD-TYPE" "SERPINB7 WILD-TYPE" "SERPINB7 WILD-TYPE" 
        TCGA-55-1596         TCGA-55-5899         TCGA-55-6543 
"SERPINB7 WILD-TYPE" "SERPINB7 WILD-TYPE" "SERPINB7 WILD-TYPE" 
        TCGA-55-6642         TCGA-55-6712         TCGA-64-1676 
"SERPINB7 WILD-TYPE" "SERPINB7 WILD-TYPE" "SERPINB7 WILD-TYPE" 
        TCGA-64-1677         TCGA-64-1678         TCGA-64-1680 
"SERPINB7 WILD-TYPE"   "SERPINB7 MUTATED" "SERPINB7 WILD-TYPE" 
        TCGA-64-5774         TCGA-64-5775         TCGA-64-5778 
"SERPINB7 WILD-TYPE" "SERPINB7 WILD-TYPE" "SERPINB7 WILD-TYPE" 
        TCGA-64-5779         TCGA-64-5781         TCGA-64-5815 
"SERPINB7 WILD-TYPE" "SERPINB7 WILD-TYPE" "SERPINB7 WILD-TYPE" 
        TCGA-67-3770         TCGA-67-3771         TCGA-67-3772 
"SERPINB7 WILD-TYPE" "SERPINB7 WILD-TYPE" "SERPINB7 WILD-TYPE" 
        TCGA-67-3773         TCGA-67-3774         TCGA-67-6215 
"SERPINB7 WILD-TYPE" "SERPINB7 WILD-TYPE" "SERPINB7 WILD-TYPE" 
        TCGA-67-6216         TCGA-67-6217         TCGA-71-6725 
"SERPINB7 WILD-TYPE" "SERPINB7 WILD-TYPE" "SERPINB7 WILD-TYPE" 
        TCGA-73-4658         TCGA-73-4659         TCGA-73-4662 
"SERPINB7 WILD-TYPE" "SERPINB7 WILD-TYPE" "SERPINB7 WILD-TYPE" 
        TCGA-73-4666         TCGA-73-4668         TCGA-73-4670 
"SERPINB7 WILD-TYPE" "SERPINB7 WILD-TYPE" "SERPINB7 WILD-TYPE" 
        TCGA-73-4675         TCGA-73-4676         TCGA-73-4677 
"SERPINB7 WILD-TYPE" "SERPINB7 WILD-TYPE" "SERPINB7 WILD-TYPE" 
        TCGA-91-6828         TCGA-91-6829         TCGA-91-6831 
"SERPINB7 WILD-TYPE" "SERPINB7 WILD-TYPE" "SERPINB7 WILD-TYPE" 
        TCGA-91-6835         TCGA-91-6836 
"SERPINB7 WILD-TYPE" "SERPINB7 WILD-TYPE" 
[1] "hr=" "1.4"
D226V2, continuous
D226V3, binary
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  SERPINB7 MUTATED      3    3
  SERPINB7 WILD-TYPE   90   76
        clus
vv       SERPINB7 MUTATED SERPINB7 WILD-TYPE
  FEMALE                3                 90
  MALE                  3                 76
D226V4, continuous
D226V5, multiclass
D226V6, multiclass
    clus
vv   SERPINB7 MUTATED SERPINB7 WILD-TYPE
  T1                0                 41
  T2                6                102
  T3                0                 14
  T4                0                  8
D226V7, multiclass
       clus
vv      SERPINB7 MUTATED SERPINB7 WILD-TYPE
  N0                   4                 91
  N1                   2                 35
  N2+N3                0                 35
D226V8, multiclass
    clus
vv   SERPINB7 MUTATED SERPINB7 WILD-TYPE
  M0                6                131
  M1                0                  9
  MX                0                 22
D226V9, multiclass
     clus
vv    SERPINB7 MUTATED SERPINB7 WILD-TYPE
  I                  3                 85
  II                 3                 30
  III                0                 39
  IV                 0                  9
D226V10, binary
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  SERPINB7 MUTATED      0    6
  SERPINB7 WILD-TYPE   16  150
     clus
vv    SERPINB7 MUTATED SERPINB7 WILD-TYPE
  NO                 0                 16
  YES                6                150
D226V11, continuous
D226V12, continuous
[1] "Remove cluster labels:" "SERPINB7 MUTATED"      
clus
  SERPINB7 MUTATED SERPINB7 WILD-TYPE 
                 2                 80 
        TCGA-05-4384         TCGA-05-4390         TCGA-05-4396 
"SERPINB7 WILD-TYPE" "SERPINB7 WILD-TYPE" "SERPINB7 WILD-TYPE" 
        TCGA-05-4403         TCGA-05-4405         TCGA-05-4410 
"SERPINB7 WILD-TYPE" "SERPINB7 WILD-TYPE" "SERPINB7 WILD-TYPE" 
        TCGA-05-4415         TCGA-05-4417         TCGA-05-4424 
"SERPINB7 WILD-TYPE" "SERPINB7 WILD-TYPE" "SERPINB7 WILD-TYPE" 
        TCGA-05-4427         TCGA-05-4433         TCGA-05-5420 
"SERPINB7 WILD-TYPE" "SERPINB7 WILD-TYPE" "SERPINB7 WILD-TYPE" 
        TCGA-05-5423         TCGA-05-5425         TCGA-05-5428 
"SERPINB7 WILD-TYPE" "SERPINB7 WILD-TYPE" "SERPINB7 WILD-TYPE" 
        TCGA-35-4122         TCGA-35-4123         TCGA-35-5375 
"SERPINB7 WILD-TYPE" "SERPINB7 WILD-TYPE" "SERPINB7 WILD-TYPE" 
        TCGA-38-4629         TCGA-38-4632         TCGA-44-2655 
"SERPINB7 WILD-TYPE" "SERPINB7 WILD-TYPE" "SERPINB7 WILD-TYPE" 
        TCGA-44-2656         TCGA-44-2657         TCGA-44-2659 
"SERPINB7 WILD-TYPE" "SERPINB7 WILD-TYPE" "SERPINB7 WILD-TYPE" 
        TCGA-44-2662         TCGA-44-2668         TCGA-44-3398 
"SERPINB7 WILD-TYPE" "SERPINB7 WILD-TYPE" "SERPINB7 WILD-TYPE" 
        TCGA-44-3918         TCGA-44-4112         TCGA-44-5645 
"SERPINB7 WILD-TYPE" "SERPINB7 WILD-TYPE" "SERPINB7 WILD-TYPE" 
        TCGA-44-6145         TCGA-44-6146         TCGA-44-6147 
"SERPINB7 WILD-TYPE" "SERPINB7 WILD-TYPE" "SERPINB7 WILD-TYPE" 
        TCGA-44-6148         TCGA-44-6775         TCGA-44-6776 
"SERPINB7 WILD-TYPE" "SERPINB7 WILD-TYPE" "SERPINB7 WILD-TYPE" 
        TCGA-44-6777         TCGA-44-6778         TCGA-44-6779 
"SERPINB7 WILD-TYPE" "SERPINB7 WILD-TYPE" "SERPINB7 WILD-TYPE" 
        TCGA-49-4486         TCGA-49-4488         TCGA-49-4494 
"SERPINB7 WILD-TYPE" "SERPINB7 WILD-TYPE" "SERPINB7 WILD-TYPE" 
        TCGA-49-4505         TCGA-49-4507         TCGA-50-5051 
"SERPINB7 WILD-TYPE" "SERPINB7 WILD-TYPE" "SERPINB7 WILD-TYPE" 
        TCGA-50-5072         TCGA-50-5939         TCGA-50-5942 
"SERPINB7 WILD-TYPE" "SERPINB7 WILD-TYPE" "SERPINB7 WILD-TYPE" 
        TCGA-50-5946         TCGA-50-6594         TCGA-50-6595 
"SERPINB7 WILD-TYPE" "SERPINB7 WILD-TYPE" "SERPINB7 WILD-TYPE" 
        TCGA-55-1592         TCGA-55-1595         TCGA-55-6543 
"SERPINB7 WILD-TYPE" "SERPINB7 WILD-TYPE" "SERPINB7 WILD-TYPE" 
        TCGA-55-6712         TCGA-64-1680         TCGA-64-5774 
"SERPINB7 WILD-TYPE" "SERPINB7 WILD-TYPE" "SERPINB7 WILD-TYPE" 
        TCGA-64-5778         TCGA-64-5779         TCGA-64-5781 
"SERPINB7 WILD-TYPE" "SERPINB7 WILD-TYPE" "SERPINB7 WILD-TYPE" 
        TCGA-64-5815         TCGA-67-6217         TCGA-73-4659 
"SERPINB7 WILD-TYPE" "SERPINB7 WILD-TYPE" "SERPINB7 WILD-TYPE" 
        TCGA-73-4662         TCGA-73-4666         TCGA-73-4668 
"SERPINB7 WILD-TYPE" "SERPINB7 WILD-TYPE" "SERPINB7 WILD-TYPE" 
        TCGA-73-4670         TCGA-73-4675         TCGA-73-4676 
"SERPINB7 WILD-TYPE" "SERPINB7 WILD-TYPE" "SERPINB7 WILD-TYPE" 
        TCGA-73-4677         TCGA-75-5122         TCGA-75-5125 
"SERPINB7 WILD-TYPE" "SERPINB7 WILD-TYPE" "SERPINB7 WILD-TYPE" 
        TCGA-75-5126         TCGA-75-5146         TCGA-75-6206 
"SERPINB7 WILD-TYPE" "SERPINB7 WILD-TYPE" "SERPINB7 WILD-TYPE" 
        TCGA-75-6207         TCGA-80-5611         TCGA-91-6828 
"SERPINB7 WILD-TYPE" "SERPINB7 WILD-TYPE" "SERPINB7 WILD-TYPE" 
        TCGA-91-6829         TCGA-91-6835 
"SERPINB7 WILD-TYPE" "SERPINB7 WILD-TYPE" 
D226V13, multiclass
                                             clus
vv                                            SERPINB7 MUTATED
  CURRENT REFORMED SMOKER FOR < OR = 15 YEARS                2
  CURRENT REFORMED SMOKER FOR > 15 YEARS                     1
  CURRENT SMOKER                                             2
  LIFELONG NON-SMOKER                                        1
                                             clus
vv                                            SERPINB7 WILD-TYPE
  CURRENT REFORMED SMOKER FOR < OR = 15 YEARS                 60
  CURRENT REFORMED SMOKER FOR > 15 YEARS                      45
  CURRENT SMOKER                                              26
  LIFELONG NON-SMOKER                                         23
D226V14, continuous
[1] "Remove cluster labels:" "SERPINB7 MUTATED"      
clus
  SERPINB7 MUTATED SERPINB7 WILD-TYPE 
                 1                 67 
        TCGA-05-4384         TCGA-05-4390         TCGA-05-4396 
"SERPINB7 WILD-TYPE" "SERPINB7 WILD-TYPE" "SERPINB7 WILD-TYPE" 
        TCGA-05-4405         TCGA-05-4410         TCGA-05-4415 
"SERPINB7 WILD-TYPE" "SERPINB7 WILD-TYPE" "SERPINB7 WILD-TYPE" 
        TCGA-05-4417         TCGA-05-4424         TCGA-05-4427 
"SERPINB7 WILD-TYPE" "SERPINB7 WILD-TYPE" "SERPINB7 WILD-TYPE" 
        TCGA-05-4433         TCGA-05-5420         TCGA-05-5423 
"SERPINB7 WILD-TYPE" "SERPINB7 WILD-TYPE" "SERPINB7 WILD-TYPE" 
        TCGA-05-5425         TCGA-05-5428         TCGA-35-4122 
"SERPINB7 WILD-TYPE" "SERPINB7 WILD-TYPE" "SERPINB7 WILD-TYPE" 
        TCGA-35-4123         TCGA-35-5375         TCGA-38-4625 
"SERPINB7 WILD-TYPE" "SERPINB7 WILD-TYPE" "SERPINB7 WILD-TYPE" 
        TCGA-38-4626         TCGA-44-2655         TCGA-44-2656 
"SERPINB7 WILD-TYPE" "SERPINB7 WILD-TYPE" "SERPINB7 WILD-TYPE" 
        TCGA-44-2657         TCGA-44-2659         TCGA-44-2662 
"SERPINB7 WILD-TYPE" "SERPINB7 WILD-TYPE" "SERPINB7 WILD-TYPE" 
        TCGA-44-2666         TCGA-44-2668         TCGA-44-3396 
"SERPINB7 WILD-TYPE" "SERPINB7 WILD-TYPE" "SERPINB7 WILD-TYPE" 
        TCGA-44-3398         TCGA-44-3918         TCGA-44-4112 
"SERPINB7 WILD-TYPE" "SERPINB7 WILD-TYPE" "SERPINB7 WILD-TYPE" 
        TCGA-44-5645         TCGA-44-6144         TCGA-44-6145 
"SERPINB7 WILD-TYPE" "SERPINB7 WILD-TYPE" "SERPINB7 WILD-TYPE" 
        TCGA-44-6147         TCGA-44-6148         TCGA-44-6774 
"SERPINB7 WILD-TYPE" "SERPINB7 WILD-TYPE" "SERPINB7 WILD-TYPE" 
        TCGA-44-6775         TCGA-44-6776         TCGA-44-6777 
"SERPINB7 WILD-TYPE" "SERPINB7 WILD-TYPE" "SERPINB7 WILD-TYPE" 
        TCGA-44-6778         TCGA-44-6779         TCGA-49-4486 
"SERPINB7 WILD-TYPE" "SERPINB7 WILD-TYPE" "SERPINB7 WILD-TYPE" 
        TCGA-49-4494         TCGA-49-4505         TCGA-55-1592 
"SERPINB7 WILD-TYPE" "SERPINB7 WILD-TYPE" "SERPINB7 WILD-TYPE" 
        TCGA-55-1594         TCGA-55-1595         TCGA-55-1596 
"SERPINB7 WILD-TYPE" "SERPINB7 WILD-TYPE" "SERPINB7 WILD-TYPE" 
        TCGA-55-5899         TCGA-55-6642         TCGA-55-6712 
"SERPINB7 WILD-TYPE" "SERPINB7 WILD-TYPE" "SERPINB7 WILD-TYPE" 
        TCGA-64-1677         TCGA-64-1680         TCGA-64-5774 
"SERPINB7 WILD-TYPE" "SERPINB7 WILD-TYPE" "SERPINB7 WILD-TYPE" 
        TCGA-64-5775         TCGA-64-5778         TCGA-64-5779 
"SERPINB7 WILD-TYPE" "SERPINB7 WILD-TYPE" "SERPINB7 WILD-TYPE" 
        TCGA-64-5781         TCGA-73-4659         TCGA-73-4662 
"SERPINB7 WILD-TYPE" "SERPINB7 WILD-TYPE" "SERPINB7 WILD-TYPE" 
        TCGA-73-4666         TCGA-73-4668         TCGA-73-4670 
"SERPINB7 WILD-TYPE" "SERPINB7 WILD-TYPE" "SERPINB7 WILD-TYPE" 
        TCGA-73-4675         TCGA-73-4676         TCGA-91-6829 
"SERPINB7 WILD-TYPE" "SERPINB7 WILD-TYPE" "SERPINB7 WILD-TYPE" 
        TCGA-91-6836 
"SERPINB7 WILD-TYPE" 

Clustering(227) Variable = GPM6A MUTATION ANALYSIS
D227V1, survival
                 sevent
clus2              0  1
  GPM6A MUTATED    3  1
  GPM6A WILD-TYPE 96 49
  GPM6A MUTATED GPM6A WILD-TYPE 
              4             145 
  GPM6A MUTATED GPM6A WILD-TYPE 
              1              49 
$`GPM6A MUTATED`
TCGA-44-4112 TCGA-64-1676 TCGA-73-4668 TCGA-91-6829 
        4.60        56.81        15.35        41.33 

$`GPM6A WILD-TYPE`
TCGA-05-4249 TCGA-05-4250 TCGA-05-4382 TCGA-05-4384 TCGA-05-4390 TCGA-05-4396 
       38.07         3.98        19.92        14.01        37.02         9.96 
TCGA-05-4397 TCGA-05-4398 TCGA-05-4402 TCGA-05-4405 TCGA-05-4415 TCGA-05-4417 
       24.03        47.05         8.02        20.05         2.96        14.93 
TCGA-05-4418 TCGA-05-4420 TCGA-05-4424 TCGA-05-4426 TCGA-05-4427 TCGA-05-4430 
        8.98        29.95        30.02        26.01        26.01        25.02 
TCGA-05-4432 TCGA-05-4433 TCGA-05-4434 TCGA-05-5420 TCGA-05-5423 TCGA-05-5425 
       25.02        24.00        15.02         1.02         4.96         2.96 
TCGA-05-5429 TCGA-05-5715 TCGA-35-3615 TCGA-35-4122 TCGA-35-4123 TCGA-35-5375 
        0.99         2.04         0.46         7.36         5.95         8.68 
TCGA-38-4625 TCGA-38-4626 TCGA-38-4627 TCGA-38-4628 TCGA-38-4629 TCGA-38-4630 
       47.61        85.32        37.71        49.02        28.37        35.28 
TCGA-38-4631 TCGA-38-4632 TCGA-38-6178 TCGA-44-2655 TCGA-44-2656 TCGA-44-2657 
       11.64        44.61         5.19        18.87        19.10        13.15 
TCGA-44-2659 TCGA-44-2661 TCGA-44-2662 TCGA-44-2665 TCGA-44-2666 TCGA-44-2668 
       17.39         3.39        15.78        13.15         3.19         8.09 
TCGA-44-3396 TCGA-44-3398 TCGA-44-3918 TCGA-44-3919 TCGA-44-5643 TCGA-44-5645 
       10.22         8.32         6.44         6.21         3.48         6.84 
TCGA-44-6144 TCGA-44-6145 TCGA-44-6146 TCGA-44-6147 TCGA-44-6148 TCGA-44-6774 
        0.30         3.35         9.93         7.76         3.12         5.42 
TCGA-44-6775 TCGA-44-6776 TCGA-44-6777 TCGA-44-6778 TCGA-44-6779 TCGA-49-4486 
        2.70        63.72        32.45        36.49        16.41        76.21 
TCGA-49-4487 TCGA-49-4488 TCGA-49-4490 TCGA-49-4494 TCGA-49-4501 TCGA-49-4505 
       28.11        28.57        12.66        35.54        46.72        14.07 
TCGA-49-4506 TCGA-49-4507 TCGA-49-4510 TCGA-49-4512 TCGA-49-4514 TCGA-49-6742 
       32.84         8.81        29.46        29.75        43.20        15.02 
TCGA-49-6743 TCGA-49-6744 TCGA-49-6745 TCGA-50-5044 TCGA-50-5045 TCGA-50-5049 
       12.13        12.99         4.93        20.48        71.47        48.82 
TCGA-50-5051 TCGA-50-5055 TCGA-50-5066 TCGA-50-5068 TCGA-50-5072 TCGA-50-5930 
       14.96        25.81         9.76        49.28         8.05         9.27 
TCGA-50-5931 TCGA-50-5932 TCGA-50-5933 TCGA-50-5935 TCGA-50-5936 TCGA-50-5939 
        8.78        35.87        77.88        21.47         8.45        15.12 
TCGA-50-5941 TCGA-50-5942 TCGA-50-5944 TCGA-50-5946 TCGA-50-6590 TCGA-50-6591 
        9.37         4.44        12.26        11.47        42.31         3.88 
TCGA-50-6592 TCGA-50-6593 TCGA-50-6594 TCGA-50-6595 TCGA-50-6597 TCGA-55-1592 
       25.51        11.05        12.16         6.21        33.37        23.05 
TCGA-55-1594 TCGA-55-1595 TCGA-55-1596 TCGA-55-5899 TCGA-55-6543 TCGA-55-6642 
       38.73        48.62        45.17         2.86         0.07        32.61 
TCGA-55-6712 TCGA-64-1677 TCGA-64-1678 TCGA-64-1680 TCGA-64-5774 TCGA-64-5775 
        0.79        20.65        39.09        37.02        83.84         0.10 
TCGA-64-5778 TCGA-64-5779 TCGA-64-5781 TCGA-64-5815 TCGA-67-3770 TCGA-67-3771 
       30.44        16.67        39.52         7.33         0.99         1.97 
TCGA-67-3772 TCGA-67-3773 TCGA-67-3774 TCGA-67-6215 TCGA-67-6216 TCGA-67-6217 
        0.59         2.04         0.59         0.89         0.69        13.87 
TCGA-71-6725 TCGA-73-4658 TCGA-73-4659 TCGA-73-4662 TCGA-73-4666 TCGA-73-4670 
        2.01        52.57        23.38        29.95        20.28         0.46 
TCGA-73-4675 TCGA-73-4676 TCGA-73-4677 TCGA-91-6828 TCGA-91-6831 TCGA-91-6835 
        1.32         4.01         1.25         1.22         1.28         1.15 
TCGA-91-6836 
        0.36 

  GPM6A MUTATED GPM6A WILD-TYPE 
           4.60            0.07 
  GPM6A MUTATED GPM6A WILD-TYPE 
          56.81           85.32 
  GPM6A MUTATED GPM6A WILD-TYPE 
          28.34           13.15 
[1] "4.6 - 56.8 (28.3)" "0.1 - 85.3 (13.2)"
     TCGA-05-4249      TCGA-05-4250      TCGA-05-4382      TCGA-05-4384 
"GPM6A WILD-TYPE" "GPM6A WILD-TYPE" "GPM6A WILD-TYPE" "GPM6A WILD-TYPE" 
     TCGA-05-4390      TCGA-05-4396      TCGA-05-4397      TCGA-05-4398 
"GPM6A WILD-TYPE" "GPM6A WILD-TYPE" "GPM6A WILD-TYPE" "GPM6A WILD-TYPE" 
     TCGA-05-4402      TCGA-05-4405      TCGA-05-4415      TCGA-05-4417 
"GPM6A WILD-TYPE" "GPM6A WILD-TYPE" "GPM6A WILD-TYPE" "GPM6A WILD-TYPE" 
     TCGA-05-4418      TCGA-05-4420      TCGA-05-4424      TCGA-05-4426 
"GPM6A WILD-TYPE" "GPM6A WILD-TYPE" "GPM6A WILD-TYPE" "GPM6A WILD-TYPE" 
     TCGA-05-4427      TCGA-05-4430      TCGA-05-4432      TCGA-05-4433 
"GPM6A WILD-TYPE" "GPM6A WILD-TYPE" "GPM6A WILD-TYPE" "GPM6A WILD-TYPE" 
     TCGA-05-4434      TCGA-05-5420      TCGA-05-5423      TCGA-05-5425 
"GPM6A WILD-TYPE" "GPM6A WILD-TYPE" "GPM6A WILD-TYPE" "GPM6A WILD-TYPE" 
     TCGA-05-5429      TCGA-05-5715      TCGA-35-3615      TCGA-35-4122 
"GPM6A WILD-TYPE" "GPM6A WILD-TYPE" "GPM6A WILD-TYPE" "GPM6A WILD-TYPE" 
     TCGA-35-4123      TCGA-35-5375      TCGA-38-4625      TCGA-38-4626 
"GPM6A WILD-TYPE" "GPM6A WILD-TYPE" "GPM6A WILD-TYPE" "GPM6A WILD-TYPE" 
     TCGA-38-4627      TCGA-38-4628      TCGA-38-4629      TCGA-38-4630 
"GPM6A WILD-TYPE" "GPM6A WILD-TYPE" "GPM6A WILD-TYPE" "GPM6A WILD-TYPE" 
     TCGA-38-4631      TCGA-38-4632      TCGA-38-6178      TCGA-44-2655 
"GPM6A WILD-TYPE" "GPM6A WILD-TYPE" "GPM6A WILD-TYPE" "GPM6A WILD-TYPE" 
     TCGA-44-2656      TCGA-44-2657      TCGA-44-2659      TCGA-44-2661 
"GPM6A WILD-TYPE" "GPM6A WILD-TYPE" "GPM6A WILD-TYPE" "GPM6A WILD-TYPE" 
     TCGA-44-2662      TCGA-44-2665      TCGA-44-2666      TCGA-44-2668 
"GPM6A WILD-TYPE" "GPM6A WILD-TYPE" "GPM6A WILD-TYPE" "GPM6A WILD-TYPE" 
     TCGA-44-3396      TCGA-44-3398      TCGA-44-3918      TCGA-44-3919 
"GPM6A WILD-TYPE" "GPM6A WILD-TYPE" "GPM6A WILD-TYPE" "GPM6A WILD-TYPE" 
     TCGA-44-4112      TCGA-44-5643      TCGA-44-5645      TCGA-44-6144 
  "GPM6A MUTATED" "GPM6A WILD-TYPE" "GPM6A WILD-TYPE" "GPM6A WILD-TYPE" 
     TCGA-44-6145      TCGA-44-6146      TCGA-44-6147      TCGA-44-6148 
"GPM6A WILD-TYPE" "GPM6A WILD-TYPE" "GPM6A WILD-TYPE" "GPM6A WILD-TYPE" 
     TCGA-44-6774      TCGA-44-6775      TCGA-44-6776      TCGA-44-6777 
"GPM6A WILD-TYPE" "GPM6A WILD-TYPE" "GPM6A WILD-TYPE" "GPM6A WILD-TYPE" 
     TCGA-44-6778      TCGA-44-6779      TCGA-49-4486      TCGA-49-4487 
"GPM6A WILD-TYPE" "GPM6A WILD-TYPE" "GPM6A WILD-TYPE" "GPM6A WILD-TYPE" 
     TCGA-49-4488      TCGA-49-4490      TCGA-49-4494      TCGA-49-4501 
"GPM6A WILD-TYPE" "GPM6A WILD-TYPE" "GPM6A WILD-TYPE" "GPM6A WILD-TYPE" 
     TCGA-49-4505      TCGA-49-4506      TCGA-49-4507      TCGA-49-4510 
"GPM6A WILD-TYPE" "GPM6A WILD-TYPE" "GPM6A WILD-TYPE" "GPM6A WILD-TYPE" 
     TCGA-49-4512      TCGA-49-4514      TCGA-49-6742      TCGA-49-6743 
"GPM6A WILD-TYPE" "GPM6A WILD-TYPE" "GPM6A WILD-TYPE" "GPM6A WILD-TYPE" 
     TCGA-49-6744      TCGA-49-6745      TCGA-50-5044      TCGA-50-5045 
"GPM6A WILD-TYPE" "GPM6A WILD-TYPE" "GPM6A WILD-TYPE" "GPM6A WILD-TYPE" 
     TCGA-50-5049      TCGA-50-5051      TCGA-50-5055      TCGA-50-5066 
"GPM6A WILD-TYPE" "GPM6A WILD-TYPE" "GPM6A WILD-TYPE" "GPM6A WILD-TYPE" 
     TCGA-50-5068      TCGA-50-5072      TCGA-50-5930      TCGA-50-5931 
"GPM6A WILD-TYPE" "GPM6A WILD-TYPE" "GPM6A WILD-TYPE" "GPM6A WILD-TYPE" 
     TCGA-50-5932      TCGA-50-5933      TCGA-50-5935      TCGA-50-5936 
"GPM6A WILD-TYPE" "GPM6A WILD-TYPE" "GPM6A WILD-TYPE" "GPM6A WILD-TYPE" 
     TCGA-50-5939      TCGA-50-5941      TCGA-50-5942      TCGA-50-5944 
"GPM6A WILD-TYPE" "GPM6A WILD-TYPE" "GPM6A WILD-TYPE" "GPM6A WILD-TYPE" 
     TCGA-50-5946      TCGA-50-6590      TCGA-50-6591      TCGA-50-6592 
"GPM6A WILD-TYPE" "GPM6A WILD-TYPE" "GPM6A WILD-TYPE" "GPM6A WILD-TYPE" 
     TCGA-50-6593      TCGA-50-6594      TCGA-50-6595      TCGA-50-6597 
"GPM6A WILD-TYPE" "GPM6A WILD-TYPE" "GPM6A WILD-TYPE" "GPM6A WILD-TYPE" 
     TCGA-55-1592      TCGA-55-1594      TCGA-55-1595      TCGA-55-1596 
"GPM6A WILD-TYPE" "GPM6A WILD-TYPE" "GPM6A WILD-TYPE" "GPM6A WILD-TYPE" 
     TCGA-55-5899      TCGA-55-6543      TCGA-55-6642      TCGA-55-6712 
"GPM6A WILD-TYPE" "GPM6A WILD-TYPE" "GPM6A WILD-TYPE" "GPM6A WILD-TYPE" 
     TCGA-64-1676      TCGA-64-1677      TCGA-64-1678      TCGA-64-1680 
  "GPM6A MUTATED" "GPM6A WILD-TYPE" "GPM6A WILD-TYPE" "GPM6A WILD-TYPE" 
     TCGA-64-5774      TCGA-64-5775      TCGA-64-5778      TCGA-64-5779 
"GPM6A WILD-TYPE" "GPM6A WILD-TYPE" "GPM6A WILD-TYPE" "GPM6A WILD-TYPE" 
     TCGA-64-5781      TCGA-64-5815      TCGA-67-3770      TCGA-67-3771 
"GPM6A WILD-TYPE" "GPM6A WILD-TYPE" "GPM6A WILD-TYPE" "GPM6A WILD-TYPE" 
     TCGA-67-3772      TCGA-67-3773      TCGA-67-3774      TCGA-67-6215 
"GPM6A WILD-TYPE" "GPM6A WILD-TYPE" "GPM6A WILD-TYPE" "GPM6A WILD-TYPE" 
     TCGA-67-6216      TCGA-67-6217      TCGA-71-6725      TCGA-73-4658 
"GPM6A WILD-TYPE" "GPM6A WILD-TYPE" "GPM6A WILD-TYPE" "GPM6A WILD-TYPE" 
     TCGA-73-4659      TCGA-73-4662      TCGA-73-4666      TCGA-73-4668 
"GPM6A WILD-TYPE" "GPM6A WILD-TYPE" "GPM6A WILD-TYPE"   "GPM6A MUTATED" 
     TCGA-73-4670      TCGA-73-4675      TCGA-73-4676      TCGA-73-4677 
"GPM6A WILD-TYPE" "GPM6A WILD-TYPE" "GPM6A WILD-TYPE" "GPM6A WILD-TYPE" 
     TCGA-91-6828      TCGA-91-6829      TCGA-91-6831      TCGA-91-6835 
"GPM6A WILD-TYPE"   "GPM6A MUTATED" "GPM6A WILD-TYPE" "GPM6A WILD-TYPE" 
     TCGA-91-6836 
"GPM6A WILD-TYPE" 
     TCGA-05-4249      TCGA-05-4250      TCGA-05-4382      TCGA-05-4384 
"GPM6A WILD-TYPE" "GPM6A WILD-TYPE" "GPM6A WILD-TYPE" "GPM6A WILD-TYPE" 
     TCGA-05-4390      TCGA-05-4396      TCGA-05-4397      TCGA-05-4398 
"GPM6A WILD-TYPE" "GPM6A WILD-TYPE" "GPM6A WILD-TYPE" "GPM6A WILD-TYPE" 
     TCGA-05-4402      TCGA-05-4405      TCGA-05-4415      TCGA-05-4417 
"GPM6A WILD-TYPE" "GPM6A WILD-TYPE" "GPM6A WILD-TYPE" "GPM6A WILD-TYPE" 
     TCGA-05-4418      TCGA-05-4420      TCGA-05-4424      TCGA-05-4426 
"GPM6A WILD-TYPE" "GPM6A WILD-TYPE" "GPM6A WILD-TYPE" "GPM6A WILD-TYPE" 
     TCGA-05-4427      TCGA-05-4430      TCGA-05-4432      TCGA-05-4433 
"GPM6A WILD-TYPE" "GPM6A WILD-TYPE" "GPM6A WILD-TYPE" "GPM6A WILD-TYPE" 
     TCGA-05-4434      TCGA-05-5420      TCGA-05-5423      TCGA-05-5425 
"GPM6A WILD-TYPE" "GPM6A WILD-TYPE" "GPM6A WILD-TYPE" "GPM6A WILD-TYPE" 
     TCGA-05-5429      TCGA-05-5715      TCGA-35-3615      TCGA-35-4122 
"GPM6A WILD-TYPE" "GPM6A WILD-TYPE" "GPM6A WILD-TYPE" "GPM6A WILD-TYPE" 
     TCGA-35-4123      TCGA-35-5375      TCGA-38-4625      TCGA-38-4626 
"GPM6A WILD-TYPE" "GPM6A WILD-TYPE" "GPM6A WILD-TYPE" "GPM6A WILD-TYPE" 
     TCGA-38-4627      TCGA-38-4628      TCGA-38-4629      TCGA-38-4630 
"GPM6A WILD-TYPE" "GPM6A WILD-TYPE" "GPM6A WILD-TYPE" "GPM6A WILD-TYPE" 
     TCGA-38-4631      TCGA-38-4632      TCGA-38-6178      TCGA-44-2655 
"GPM6A WILD-TYPE" "GPM6A WILD-TYPE" "GPM6A WILD-TYPE" "GPM6A WILD-TYPE" 
     TCGA-44-2656      TCGA-44-2657      TCGA-44-2659      TCGA-44-2661 
"GPM6A WILD-TYPE" "GPM6A WILD-TYPE" "GPM6A WILD-TYPE" "GPM6A WILD-TYPE" 
     TCGA-44-2662      TCGA-44-2665      TCGA-44-2666      TCGA-44-2668 
"GPM6A WILD-TYPE" "GPM6A WILD-TYPE" "GPM6A WILD-TYPE" "GPM6A WILD-TYPE" 
     TCGA-44-3396      TCGA-44-3398      TCGA-44-3918      TCGA-44-3919 
"GPM6A WILD-TYPE" "GPM6A WILD-TYPE" "GPM6A WILD-TYPE" "GPM6A WILD-TYPE" 
     TCGA-44-4112      TCGA-44-5643      TCGA-44-5645      TCGA-44-6144 
  "GPM6A MUTATED" "GPM6A WILD-TYPE" "GPM6A WILD-TYPE" "GPM6A WILD-TYPE" 
     TCGA-44-6145      TCGA-44-6146      TCGA-44-6147      TCGA-44-6148 
"GPM6A WILD-TYPE" "GPM6A WILD-TYPE" "GPM6A WILD-TYPE" "GPM6A WILD-TYPE" 
     TCGA-44-6774      TCGA-44-6775      TCGA-44-6776      TCGA-44-6777 
"GPM6A WILD-TYPE" "GPM6A WILD-TYPE" "GPM6A WILD-TYPE" "GPM6A WILD-TYPE" 
     TCGA-44-6778      TCGA-44-6779      TCGA-49-4486      TCGA-49-4487 
"GPM6A WILD-TYPE" "GPM6A WILD-TYPE" "GPM6A WILD-TYPE" "GPM6A WILD-TYPE" 
     TCGA-49-4488      TCGA-49-4490      TCGA-49-4494      TCGA-49-4501 
"GPM6A WILD-TYPE" "GPM6A WILD-TYPE" "GPM6A WILD-TYPE" "GPM6A WILD-TYPE" 
     TCGA-49-4505      TCGA-49-4506      TCGA-49-4507      TCGA-49-4510 
"GPM6A WILD-TYPE" "GPM6A WILD-TYPE" "GPM6A WILD-TYPE" "GPM6A WILD-TYPE" 
     TCGA-49-4512      TCGA-49-4514      TCGA-49-6742      TCGA-49-6743 
"GPM6A WILD-TYPE" "GPM6A WILD-TYPE" "GPM6A WILD-TYPE" "GPM6A WILD-TYPE" 
     TCGA-49-6744      TCGA-49-6745      TCGA-50-5044      TCGA-50-5045 
"GPM6A WILD-TYPE" "GPM6A WILD-TYPE" "GPM6A WILD-TYPE" "GPM6A WILD-TYPE" 
     TCGA-50-5049      TCGA-50-5051      TCGA-50-5055      TCGA-50-5066 
"GPM6A WILD-TYPE" "GPM6A WILD-TYPE" "GPM6A WILD-TYPE" "GPM6A WILD-TYPE" 
     TCGA-50-5068      TCGA-50-5072      TCGA-50-5930      TCGA-50-5931 
"GPM6A WILD-TYPE" "GPM6A WILD-TYPE" "GPM6A WILD-TYPE" "GPM6A WILD-TYPE" 
     TCGA-50-5932      TCGA-50-5933      TCGA-50-5935      TCGA-50-5936 
"GPM6A WILD-TYPE" "GPM6A WILD-TYPE" "GPM6A WILD-TYPE" "GPM6A WILD-TYPE" 
     TCGA-50-5939      TCGA-50-5941      TCGA-50-5942      TCGA-50-5944 
"GPM6A WILD-TYPE" "GPM6A WILD-TYPE" "GPM6A WILD-TYPE" "GPM6A WILD-TYPE" 
     TCGA-50-5946      TCGA-50-6590      TCGA-50-6591      TCGA-50-6592 
"GPM6A WILD-TYPE" "GPM6A WILD-TYPE" "GPM6A WILD-TYPE" "GPM6A WILD-TYPE" 
     TCGA-50-6593      TCGA-50-6594      TCGA-50-6595      TCGA-50-6597 
"GPM6A WILD-TYPE" "GPM6A WILD-TYPE" "GPM6A WILD-TYPE" "GPM6A WILD-TYPE" 
     TCGA-55-1592      TCGA-55-1594      TCGA-55-1595      TCGA-55-1596 
"GPM6A WILD-TYPE" "GPM6A WILD-TYPE" "GPM6A WILD-TYPE" "GPM6A WILD-TYPE" 
     TCGA-55-5899      TCGA-55-6543      TCGA-55-6642      TCGA-55-6712 
"GPM6A WILD-TYPE" "GPM6A WILD-TYPE" "GPM6A WILD-TYPE" "GPM6A WILD-TYPE" 
     TCGA-64-1676      TCGA-64-1677      TCGA-64-1678      TCGA-64-1680 
  "GPM6A MUTATED" "GPM6A WILD-TYPE" "GPM6A WILD-TYPE" "GPM6A WILD-TYPE" 
     TCGA-64-5774      TCGA-64-5775      TCGA-64-5778      TCGA-64-5779 
"GPM6A WILD-TYPE" "GPM6A WILD-TYPE" "GPM6A WILD-TYPE" "GPM6A WILD-TYPE" 
     TCGA-64-5781      TCGA-64-5815      TCGA-67-3770      TCGA-67-3771 
"GPM6A WILD-TYPE" "GPM6A WILD-TYPE" "GPM6A WILD-TYPE" "GPM6A WILD-TYPE" 
     TCGA-67-3772      TCGA-67-3773      TCGA-67-3774      TCGA-67-6215 
"GPM6A WILD-TYPE" "GPM6A WILD-TYPE" "GPM6A WILD-TYPE" "GPM6A WILD-TYPE" 
     TCGA-67-6216      TCGA-67-6217      TCGA-71-6725      TCGA-73-4658 
"GPM6A WILD-TYPE" "GPM6A WILD-TYPE" "GPM6A WILD-TYPE" "GPM6A WILD-TYPE" 
     TCGA-73-4659      TCGA-73-4662      TCGA-73-4666      TCGA-73-4668 
"GPM6A WILD-TYPE" "GPM6A WILD-TYPE" "GPM6A WILD-TYPE"   "GPM6A MUTATED" 
     TCGA-73-4670      TCGA-73-4675      TCGA-73-4676      TCGA-73-4677 
"GPM6A WILD-TYPE" "GPM6A WILD-TYPE" "GPM6A WILD-TYPE" "GPM6A WILD-TYPE" 
     TCGA-91-6828      TCGA-91-6829      TCGA-91-6831      TCGA-91-6835 
"GPM6A WILD-TYPE"   "GPM6A MUTATED" "GPM6A WILD-TYPE" "GPM6A WILD-TYPE" 
     TCGA-91-6836 
"GPM6A WILD-TYPE" 
     TCGA-05-4249      TCGA-05-4250      TCGA-05-4382      TCGA-05-4384 
"GPM6A WILD-TYPE" "GPM6A WILD-TYPE" "GPM6A WILD-TYPE" "GPM6A WILD-TYPE" 
     TCGA-05-4390      TCGA-05-4396      TCGA-05-4397      TCGA-05-4398 
"GPM6A WILD-TYPE" "GPM6A WILD-TYPE" "GPM6A WILD-TYPE" "GPM6A WILD-TYPE" 
     TCGA-05-4402      TCGA-05-4405      TCGA-05-4415      TCGA-05-4417 
"GPM6A WILD-TYPE" "GPM6A WILD-TYPE" "GPM6A WILD-TYPE" "GPM6A WILD-TYPE" 
     TCGA-05-4418      TCGA-05-4420      TCGA-05-4424      TCGA-05-4426 
"GPM6A WILD-TYPE" "GPM6A WILD-TYPE" "GPM6A WILD-TYPE" "GPM6A WILD-TYPE" 
     TCGA-05-4427      TCGA-05-4430      TCGA-05-4432      TCGA-05-4433 
"GPM6A WILD-TYPE" "GPM6A WILD-TYPE" "GPM6A WILD-TYPE" "GPM6A WILD-TYPE" 
     TCGA-05-4434      TCGA-05-5420      TCGA-05-5423      TCGA-05-5425 
"GPM6A WILD-TYPE" "GPM6A WILD-TYPE" "GPM6A WILD-TYPE" "GPM6A WILD-TYPE" 
     TCGA-05-5429      TCGA-05-5715      TCGA-35-3615      TCGA-35-4122 
"GPM6A WILD-TYPE" "GPM6A WILD-TYPE" "GPM6A WILD-TYPE" "GPM6A WILD-TYPE" 
     TCGA-35-4123      TCGA-35-5375      TCGA-38-4625      TCGA-38-4626 
"GPM6A WILD-TYPE" "GPM6A WILD-TYPE" "GPM6A WILD-TYPE" "GPM6A WILD-TYPE" 
     TCGA-38-4627      TCGA-38-4628      TCGA-38-4629      TCGA-38-4630 
"GPM6A WILD-TYPE" "GPM6A WILD-TYPE" "GPM6A WILD-TYPE" "GPM6A WILD-TYPE" 
     TCGA-38-4631      TCGA-38-4632      TCGA-38-6178      TCGA-44-2655 
"GPM6A WILD-TYPE" "GPM6A WILD-TYPE" "GPM6A WILD-TYPE" "GPM6A WILD-TYPE" 
     TCGA-44-2656      TCGA-44-2657      TCGA-44-2659      TCGA-44-2661 
"GPM6A WILD-TYPE" "GPM6A WILD-TYPE" "GPM6A WILD-TYPE" "GPM6A WILD-TYPE" 
     TCGA-44-2662      TCGA-44-2665      TCGA-44-2666      TCGA-44-2668 
"GPM6A WILD-TYPE" "GPM6A WILD-TYPE" "GPM6A WILD-TYPE" "GPM6A WILD-TYPE" 
     TCGA-44-3396      TCGA-44-3398      TCGA-44-3918      TCGA-44-3919 
"GPM6A WILD-TYPE" "GPM6A WILD-TYPE" "GPM6A WILD-TYPE" "GPM6A WILD-TYPE" 
     TCGA-44-4112      TCGA-44-5643      TCGA-44-5645      TCGA-44-6144 
  "GPM6A MUTATED" "GPM6A WILD-TYPE" "GPM6A WILD-TYPE" "GPM6A WILD-TYPE" 
     TCGA-44-6145      TCGA-44-6146      TCGA-44-6147      TCGA-44-6148 
"GPM6A WILD-TYPE" "GPM6A WILD-TYPE" "GPM6A WILD-TYPE" "GPM6A WILD-TYPE" 
     TCGA-44-6774      TCGA-44-6775      TCGA-44-6776      TCGA-44-6777 
"GPM6A WILD-TYPE" "GPM6A WILD-TYPE" "GPM6A WILD-TYPE" "GPM6A WILD-TYPE" 
     TCGA-44-6778      TCGA-44-6779      TCGA-49-4486      TCGA-49-4487 
"GPM6A WILD-TYPE" "GPM6A WILD-TYPE" "GPM6A WILD-TYPE" "GPM6A WILD-TYPE" 
     TCGA-49-4488      TCGA-49-4490      TCGA-49-4494      TCGA-49-4501 
"GPM6A WILD-TYPE" "GPM6A WILD-TYPE" "GPM6A WILD-TYPE" "GPM6A WILD-TYPE" 
     TCGA-49-4505      TCGA-49-4506      TCGA-49-4507      TCGA-49-4510 
"GPM6A WILD-TYPE" "GPM6A WILD-TYPE" "GPM6A WILD-TYPE" "GPM6A WILD-TYPE" 
     TCGA-49-4512      TCGA-49-4514      TCGA-49-6742      TCGA-49-6743 
"GPM6A WILD-TYPE" "GPM6A WILD-TYPE" "GPM6A WILD-TYPE" "GPM6A WILD-TYPE" 
     TCGA-49-6744      TCGA-49-6745      TCGA-50-5044      TCGA-50-5045 
"GPM6A WILD-TYPE" "GPM6A WILD-TYPE" "GPM6A WILD-TYPE" "GPM6A WILD-TYPE" 
     TCGA-50-5049      TCGA-50-5051      TCGA-50-5055      TCGA-50-5066 
"GPM6A WILD-TYPE" "GPM6A WILD-TYPE" "GPM6A WILD-TYPE" "GPM6A WILD-TYPE" 
     TCGA-50-5068      TCGA-50-5072      TCGA-50-5930      TCGA-50-5931 
"GPM6A WILD-TYPE" "GPM6A WILD-TYPE" "GPM6A WILD-TYPE" "GPM6A WILD-TYPE" 
     TCGA-50-5932      TCGA-50-5933      TCGA-50-5935      TCGA-50-5936 
"GPM6A WILD-TYPE" "GPM6A WILD-TYPE" "GPM6A WILD-TYPE" "GPM6A WILD-TYPE" 
     TCGA-50-5939      TCGA-50-5941      TCGA-50-5942      TCGA-50-5944 
"GPM6A WILD-TYPE" "GPM6A WILD-TYPE" "GPM6A WILD-TYPE" "GPM6A WILD-TYPE" 
     TCGA-50-5946      TCGA-50-6590      TCGA-50-6591      TCGA-50-6592 
"GPM6A WILD-TYPE" "GPM6A WILD-TYPE" "GPM6A WILD-TYPE" "GPM6A WILD-TYPE" 
     TCGA-50-6593      TCGA-50-6594      TCGA-50-6595      TCGA-50-6597 
"GPM6A WILD-TYPE" "GPM6A WILD-TYPE" "GPM6A WILD-TYPE" "GPM6A WILD-TYPE" 
     TCGA-55-1592      TCGA-55-1594      TCGA-55-1595      TCGA-55-1596 
"GPM6A WILD-TYPE" "GPM6A WILD-TYPE" "GPM6A WILD-TYPE" "GPM6A WILD-TYPE" 
     TCGA-55-5899      TCGA-55-6543      TCGA-55-6642      TCGA-55-6712 
"GPM6A WILD-TYPE" "GPM6A WILD-TYPE" "GPM6A WILD-TYPE" "GPM6A WILD-TYPE" 
     TCGA-64-1676      TCGA-64-1677      TCGA-64-1678      TCGA-64-1680 
  "GPM6A MUTATED" "GPM6A WILD-TYPE" "GPM6A WILD-TYPE" "GPM6A WILD-TYPE" 
     TCGA-64-5774      TCGA-64-5775      TCGA-64-5778      TCGA-64-5779 
"GPM6A WILD-TYPE" "GPM6A WILD-TYPE" "GPM6A WILD-TYPE" "GPM6A WILD-TYPE" 
     TCGA-64-5781      TCGA-64-5815      TCGA-67-3770      TCGA-67-3771 
"GPM6A WILD-TYPE" "GPM6A WILD-TYPE" "GPM6A WILD-TYPE" "GPM6A WILD-TYPE" 
     TCGA-67-3772      TCGA-67-3773      TCGA-67-3774      TCGA-67-6215 
"GPM6A WILD-TYPE" "GPM6A WILD-TYPE" "GPM6A WILD-TYPE" "GPM6A WILD-TYPE" 
     TCGA-67-6216      TCGA-67-6217      TCGA-71-6725      TCGA-73-4658 
"GPM6A WILD-TYPE" "GPM6A WILD-TYPE" "GPM6A WILD-TYPE" "GPM6A WILD-TYPE" 
     TCGA-73-4659      TCGA-73-4662      TCGA-73-4666      TCGA-73-4668 
"GPM6A WILD-TYPE" "GPM6A WILD-TYPE" "GPM6A WILD-TYPE"   "GPM6A MUTATED" 
     TCGA-73-4670      TCGA-73-4675      TCGA-73-4676      TCGA-73-4677 
"GPM6A WILD-TYPE" "GPM6A WILD-TYPE" "GPM6A WILD-TYPE" "GPM6A WILD-TYPE" 
     TCGA-91-6828      TCGA-91-6829      TCGA-91-6831      TCGA-91-6835 
"GPM6A WILD-TYPE"   "GPM6A MUTATED" "GPM6A WILD-TYPE" "GPM6A WILD-TYPE" 
     TCGA-91-6836 
"GPM6A WILD-TYPE" 
[1] "hr=" "2.3"
D227V2, continuous
D227V3, binary
[1] "tbl2"
                 cls
clus              [,1] [,2]
  GPM6A MUTATED      2    2
  GPM6A WILD-TYPE   91   77
        clus
vv       GPM6A MUTATED GPM6A WILD-TYPE
  FEMALE             2              91
  MALE               2              77
D227V4, continuous
[1] "Remove cluster labels:" "GPM6A MUTATED"         
clus
  GPM6A MUTATED GPM6A WILD-TYPE 
              1              11 
     TCGA-35-4122      TCGA-35-4123      TCGA-35-5375      TCGA-64-1677 
"GPM6A WILD-TYPE" "GPM6A WILD-TYPE" "GPM6A WILD-TYPE" "GPM6A WILD-TYPE" 
     TCGA-64-5778      TCGA-71-6725      TCGA-73-4659      TCGA-73-4662 
"GPM6A WILD-TYPE" "GPM6A WILD-TYPE" "GPM6A WILD-TYPE" "GPM6A WILD-TYPE" 
     TCGA-73-4666      TCGA-73-4676      TCGA-75-5122 
"GPM6A WILD-TYPE" "GPM6A WILD-TYPE" "GPM6A WILD-TYPE" 
D227V5, multiclass
D227V6, multiclass
    clus
vv   GPM6A MUTATED GPM6A WILD-TYPE
  T1             1              40
  T2             3             105
  T3             0              14
  T4             0               8
D227V7, multiclass
       clus
vv      GPM6A MUTATED GPM6A WILD-TYPE
  N0                3              92
  N1                1              36
  N2+N3             0              35
D227V8, multiclass
    clus
vv   GPM6A MUTATED GPM6A WILD-TYPE
  M0             3             134
  M1             0               9
  MX             1              21
D227V9, multiclass
     clus
vv    GPM6A MUTATED GPM6A WILD-TYPE
  I               3              85
  II              1              32
  III             0              39
  IV              0               9
D227V10, binary
[1] "tbl2"
                 cls
clus              [,1] [,2]
  GPM6A MUTATED      0    4
  GPM6A WILD-TYPE   16  152
     clus
vv    GPM6A MUTATED GPM6A WILD-TYPE
  NO              0              16
  YES             4             152
D227V11, continuous
D227V12, continuous
D227V13, multiclass
                                             clus
vv                                            GPM6A MUTATED GPM6A WILD-TYPE
  CURRENT REFORMED SMOKER FOR < OR = 15 YEARS             2              60
  CURRENT REFORMED SMOKER FOR > 15 YEARS                  1              45
  CURRENT SMOKER                                          1              27
  LIFELONG NON-SMOKER                                     0              24
D227V14, continuous

Clustering(228) Variable = HYAL4 MUTATION ANALYSIS
D228V1, survival
                 sevent
clus2              0  1
  HYAL4 MUTATED    2  2
  HYAL4 WILD-TYPE 97 48
  HYAL4 MUTATED HYAL4 WILD-TYPE 
              4             145 
  HYAL4 MUTATED HYAL4 WILD-TYPE 
              2              48 
$`HYAL4 MUTATED`
TCGA-44-6777 TCGA-50-5933 TCGA-64-1678 TCGA-64-5781 
       32.45        77.88        39.09        39.52 

$`HYAL4 WILD-TYPE`
TCGA-05-4249 TCGA-05-4250 TCGA-05-4382 TCGA-05-4384 TCGA-05-4390 TCGA-05-4396 
       38.07         3.98        19.92        14.01        37.02         9.96 
TCGA-05-4397 TCGA-05-4398 TCGA-05-4402 TCGA-05-4405 TCGA-05-4415 TCGA-05-4417 
       24.03        47.05         8.02        20.05         2.96        14.93 
TCGA-05-4418 TCGA-05-4420 TCGA-05-4424 TCGA-05-4426 TCGA-05-4427 TCGA-05-4430 
        8.98        29.95        30.02        26.01        26.01        25.02 
TCGA-05-4432 TCGA-05-4433 TCGA-05-4434 TCGA-05-5420 TCGA-05-5423 TCGA-05-5425 
       25.02        24.00        15.02         1.02         4.96         2.96 
TCGA-05-5429 TCGA-05-5715 TCGA-35-3615 TCGA-35-4122 TCGA-35-4123 TCGA-35-5375 
        0.99         2.04         0.46         7.36         5.95         8.68 
TCGA-38-4625 TCGA-38-4626 TCGA-38-4627 TCGA-38-4628 TCGA-38-4629 TCGA-38-4630 
       47.61        85.32        37.71        49.02        28.37        35.28 
TCGA-38-4631 TCGA-38-4632 TCGA-38-6178 TCGA-44-2655 TCGA-44-2656 TCGA-44-2657 
       11.64        44.61         5.19        18.87        19.10        13.15 
TCGA-44-2659 TCGA-44-2661 TCGA-44-2662 TCGA-44-2665 TCGA-44-2666 TCGA-44-2668 
       17.39         3.39        15.78        13.15         3.19         8.09 
TCGA-44-3396 TCGA-44-3398 TCGA-44-3918 TCGA-44-3919 TCGA-44-4112 TCGA-44-5643 
       10.22         8.32         6.44         6.21         4.60         3.48 
TCGA-44-5645 TCGA-44-6144 TCGA-44-6145 TCGA-44-6146 TCGA-44-6147 TCGA-44-6148 
        6.84         0.30         3.35         9.93         7.76         3.12 
TCGA-44-6774 TCGA-44-6775 TCGA-44-6776 TCGA-44-6778 TCGA-44-6779 TCGA-49-4486 
        5.42         2.70        63.72        36.49        16.41        76.21 
TCGA-49-4487 TCGA-49-4488 TCGA-49-4490 TCGA-49-4494 TCGA-49-4501 TCGA-49-4505 
       28.11        28.57        12.66        35.54        46.72        14.07 
TCGA-49-4506 TCGA-49-4507 TCGA-49-4510 TCGA-49-4512 TCGA-49-4514 TCGA-49-6742 
       32.84         8.81        29.46        29.75        43.20        15.02 
TCGA-49-6743 TCGA-49-6744 TCGA-49-6745 TCGA-50-5044 TCGA-50-5045 TCGA-50-5049 
       12.13        12.99         4.93        20.48        71.47        48.82 
TCGA-50-5051 TCGA-50-5055 TCGA-50-5066 TCGA-50-5068 TCGA-50-5072 TCGA-50-5930 
       14.96        25.81         9.76        49.28         8.05         9.27 
TCGA-50-5931 TCGA-50-5932 TCGA-50-5935 TCGA-50-5936 TCGA-50-5939 TCGA-50-5941 
        8.78        35.87        21.47         8.45        15.12         9.37 
TCGA-50-5942 TCGA-50-5944 TCGA-50-5946 TCGA-50-6590 TCGA-50-6591 TCGA-50-6592 
        4.44        12.26        11.47        42.31         3.88        25.51 
TCGA-50-6593 TCGA-50-6594 TCGA-50-6595 TCGA-50-6597 TCGA-55-1592 TCGA-55-1594 
       11.05        12.16         6.21        33.37        23.05        38.73 
TCGA-55-1595 TCGA-55-1596 TCGA-55-5899 TCGA-55-6543 TCGA-55-6642 TCGA-55-6712 
       48.62        45.17         2.86         0.07        32.61         0.79 
TCGA-64-1676 TCGA-64-1677 TCGA-64-1680 TCGA-64-5774 TCGA-64-5775 TCGA-64-5778 
       56.81        20.65        37.02        83.84         0.10        30.44 
TCGA-64-5779 TCGA-64-5815 TCGA-67-3770 TCGA-67-3771 TCGA-67-3772 TCGA-67-3773 
       16.67         7.33         0.99         1.97         0.59         2.04 
TCGA-67-3774 TCGA-67-6215 TCGA-67-6216 TCGA-67-6217 TCGA-71-6725 TCGA-73-4658 
        0.59         0.89         0.69        13.87         2.01        52.57 
TCGA-73-4659 TCGA-73-4662 TCGA-73-4666 TCGA-73-4668 TCGA-73-4670 TCGA-73-4675 
       23.38        29.95        20.28        15.35         0.46         1.32 
TCGA-73-4676 TCGA-73-4677 TCGA-91-6828 TCGA-91-6829 TCGA-91-6831 TCGA-91-6835 
        4.01         1.25         1.22        41.33         1.28         1.15 
TCGA-91-6836 
        0.36 

  HYAL4 MUTATED HYAL4 WILD-TYPE 
          32.45            0.07 
  HYAL4 MUTATED HYAL4 WILD-TYPE 
          77.88           85.32 
  HYAL4 MUTATED HYAL4 WILD-TYPE 
         39.305          13.150 
[1] "32.5 - 77.9 (39.3)" "0.1 - 85.3 (13.2)" 
     TCGA-05-4249      TCGA-05-4250      TCGA-05-4382      TCGA-05-4384 
"HYAL4 WILD-TYPE" "HYAL4 WILD-TYPE" "HYAL4 WILD-TYPE" "HYAL4 WILD-TYPE" 
     TCGA-05-4390      TCGA-05-4396      TCGA-05-4397      TCGA-05-4398 
"HYAL4 WILD-TYPE" "HYAL4 WILD-TYPE" "HYAL4 WILD-TYPE" "HYAL4 WILD-TYPE" 
     TCGA-05-4402      TCGA-05-4405      TCGA-05-4415      TCGA-05-4417 
"HYAL4 WILD-TYPE" "HYAL4 WILD-TYPE" "HYAL4 WILD-TYPE" "HYAL4 WILD-TYPE" 
     TCGA-05-4418      TCGA-05-4420      TCGA-05-4424      TCGA-05-4426 
"HYAL4 WILD-TYPE" "HYAL4 WILD-TYPE" "HYAL4 WILD-TYPE" "HYAL4 WILD-TYPE" 
     TCGA-05-4427      TCGA-05-4430      TCGA-05-4432      TCGA-05-4433 
"HYAL4 WILD-TYPE" "HYAL4 WILD-TYPE" "HYAL4 WILD-TYPE" "HYAL4 WILD-TYPE" 
     TCGA-05-4434      TCGA-05-5420      TCGA-05-5423      TCGA-05-5425 
"HYAL4 WILD-TYPE" "HYAL4 WILD-TYPE" "HYAL4 WILD-TYPE" "HYAL4 WILD-TYPE" 
     TCGA-05-5429      TCGA-05-5715      TCGA-35-3615      TCGA-35-4122 
"HYAL4 WILD-TYPE" "HYAL4 WILD-TYPE" "HYAL4 WILD-TYPE" "HYAL4 WILD-TYPE" 
     TCGA-35-4123      TCGA-35-5375      TCGA-38-4625      TCGA-38-4626 
"HYAL4 WILD-TYPE" "HYAL4 WILD-TYPE" "HYAL4 WILD-TYPE" "HYAL4 WILD-TYPE" 
     TCGA-38-4627      TCGA-38-4628      TCGA-38-4629      TCGA-38-4630 
"HYAL4 WILD-TYPE" "HYAL4 WILD-TYPE" "HYAL4 WILD-TYPE" "HYAL4 WILD-TYPE" 
     TCGA-38-4631      TCGA-38-4632      TCGA-38-6178      TCGA-44-2655 
"HYAL4 WILD-TYPE" "HYAL4 WILD-TYPE" "HYAL4 WILD-TYPE" "HYAL4 WILD-TYPE" 
     TCGA-44-2656      TCGA-44-2657      TCGA-44-2659      TCGA-44-2661 
"HYAL4 WILD-TYPE" "HYAL4 WILD-TYPE" "HYAL4 WILD-TYPE" "HYAL4 WILD-TYPE" 
     TCGA-44-2662      TCGA-44-2665      TCGA-44-2666      TCGA-44-2668 
"HYAL4 WILD-TYPE" "HYAL4 WILD-TYPE" "HYAL4 WILD-TYPE" "HYAL4 WILD-TYPE" 
     TCGA-44-3396      TCGA-44-3398      TCGA-44-3918      TCGA-44-3919 
"HYAL4 WILD-TYPE" "HYAL4 WILD-TYPE" "HYAL4 WILD-TYPE" "HYAL4 WILD-TYPE" 
     TCGA-44-4112      TCGA-44-5643      TCGA-44-5645      TCGA-44-6144 
"HYAL4 WILD-TYPE" "HYAL4 WILD-TYPE" "HYAL4 WILD-TYPE" "HYAL4 WILD-TYPE" 
     TCGA-44-6145      TCGA-44-6146      TCGA-44-6147      TCGA-44-6148 
"HYAL4 WILD-TYPE" "HYAL4 WILD-TYPE" "HYAL4 WILD-TYPE" "HYAL4 WILD-TYPE" 
     TCGA-44-6774      TCGA-44-6775      TCGA-44-6776      TCGA-44-6777 
"HYAL4 WILD-TYPE" "HYAL4 WILD-TYPE" "HYAL4 WILD-TYPE"   "HYAL4 MUTATED" 
     TCGA-44-6778      TCGA-44-6779      TCGA-49-4486      TCGA-49-4487 
"HYAL4 WILD-TYPE" "HYAL4 WILD-TYPE" "HYAL4 WILD-TYPE" "HYAL4 WILD-TYPE" 
     TCGA-49-4488      TCGA-49-4490      TCGA-49-4494      TCGA-49-4501 
"HYAL4 WILD-TYPE" "HYAL4 WILD-TYPE" "HYAL4 WILD-TYPE" "HYAL4 WILD-TYPE" 
     TCGA-49-4505      TCGA-49-4506      TCGA-49-4507      TCGA-49-4510 
"HYAL4 WILD-TYPE" "HYAL4 WILD-TYPE" "HYAL4 WILD-TYPE" "HYAL4 WILD-TYPE" 
     TCGA-49-4512      TCGA-49-4514      TCGA-49-6742      TCGA-49-6743 
"HYAL4 WILD-TYPE" "HYAL4 WILD-TYPE" "HYAL4 WILD-TYPE" "HYAL4 WILD-TYPE" 
     TCGA-49-6744      TCGA-49-6745      TCGA-50-5044      TCGA-50-5045 
"HYAL4 WILD-TYPE" "HYAL4 WILD-TYPE" "HYAL4 WILD-TYPE" "HYAL4 WILD-TYPE" 
     TCGA-50-5049      TCGA-50-5051      TCGA-50-5055      TCGA-50-5066 
"HYAL4 WILD-TYPE" "HYAL4 WILD-TYPE" "HYAL4 WILD-TYPE" "HYAL4 WILD-TYPE" 
     TCGA-50-5068      TCGA-50-5072      TCGA-50-5930      TCGA-50-5931 
"HYAL4 WILD-TYPE" "HYAL4 WILD-TYPE" "HYAL4 WILD-TYPE" "HYAL4 WILD-TYPE" 
     TCGA-50-5932      TCGA-50-5933      TCGA-50-5935      TCGA-50-5936 
"HYAL4 WILD-TYPE"   "HYAL4 MUTATED" "HYAL4 WILD-TYPE" "HYAL4 WILD-TYPE" 
     TCGA-50-5939      TCGA-50-5941      TCGA-50-5942      TCGA-50-5944 
"HYAL4 WILD-TYPE" "HYAL4 WILD-TYPE" "HYAL4 WILD-TYPE" "HYAL4 WILD-TYPE" 
     TCGA-50-5946      TCGA-50-6590      TCGA-50-6591      TCGA-50-6592 
"HYAL4 WILD-TYPE" "HYAL4 WILD-TYPE" "HYAL4 WILD-TYPE" "HYAL4 WILD-TYPE" 
     TCGA-50-6593      TCGA-50-6594      TCGA-50-6595      TCGA-50-6597 
"HYAL4 WILD-TYPE" "HYAL4 WILD-TYPE" "HYAL4 WILD-TYPE" "HYAL4 WILD-TYPE" 
     TCGA-55-1592      TCGA-55-1594      TCGA-55-1595      TCGA-55-1596 
"HYAL4 WILD-TYPE" "HYAL4 WILD-TYPE" "HYAL4 WILD-TYPE" "HYAL4 WILD-TYPE" 
     TCGA-55-5899      TCGA-55-6543      TCGA-55-6642      TCGA-55-6712 
"HYAL4 WILD-TYPE" "HYAL4 WILD-TYPE" "HYAL4 WILD-TYPE" "HYAL4 WILD-TYPE" 
     TCGA-64-1676      TCGA-64-1677      TCGA-64-1678      TCGA-64-1680 
"HYAL4 WILD-TYPE" "HYAL4 WILD-TYPE"   "HYAL4 MUTATED" "HYAL4 WILD-TYPE" 
     TCGA-64-5774      TCGA-64-5775      TCGA-64-5778      TCGA-64-5779 
"HYAL4 WILD-TYPE" "HYAL4 WILD-TYPE" "HYAL4 WILD-TYPE" "HYAL4 WILD-TYPE" 
     TCGA-64-5781      TCGA-64-5815      TCGA-67-3770      TCGA-67-3771 
  "HYAL4 MUTATED" "HYAL4 WILD-TYPE" "HYAL4 WILD-TYPE" "HYAL4 WILD-TYPE" 
     TCGA-67-3772      TCGA-67-3773      TCGA-67-3774      TCGA-67-6215 
"HYAL4 WILD-TYPE" "HYAL4 WILD-TYPE" "HYAL4 WILD-TYPE" "HYAL4 WILD-TYPE" 
     TCGA-67-6216      TCGA-67-6217      TCGA-71-6725      TCGA-73-4658 
"HYAL4 WILD-TYPE" "HYAL4 WILD-TYPE" "HYAL4 WILD-TYPE" "HYAL4 WILD-TYPE" 
     TCGA-73-4659      TCGA-73-4662      TCGA-73-4666      TCGA-73-4668 
"HYAL4 WILD-TYPE" "HYAL4 WILD-TYPE" "HYAL4 WILD-TYPE" "HYAL4 WILD-TYPE" 
     TCGA-73-4670      TCGA-73-4675      TCGA-73-4676      TCGA-73-4677 
"HYAL4 WILD-TYPE" "HYAL4 WILD-TYPE" "HYAL4 WILD-TYPE" "HYAL4 WILD-TYPE" 
     TCGA-91-6828      TCGA-91-6829      TCGA-91-6831      TCGA-91-6835 
"HYAL4 WILD-TYPE" "HYAL4 WILD-TYPE" "HYAL4 WILD-TYPE" "HYAL4 WILD-TYPE" 
     TCGA-91-6836 
"HYAL4 WILD-TYPE" 
     TCGA-05-4249      TCGA-05-4250      TCGA-05-4382      TCGA-05-4384 
"HYAL4 WILD-TYPE" "HYAL4 WILD-TYPE" "HYAL4 WILD-TYPE" "HYAL4 WILD-TYPE" 
     TCGA-05-4390      TCGA-05-4396      TCGA-05-4397      TCGA-05-4398 
"HYAL4 WILD-TYPE" "HYAL4 WILD-TYPE" "HYAL4 WILD-TYPE" "HYAL4 WILD-TYPE" 
     TCGA-05-4402      TCGA-05-4405      TCGA-05-4415      TCGA-05-4417 
"HYAL4 WILD-TYPE" "HYAL4 WILD-TYPE" "HYAL4 WILD-TYPE" "HYAL4 WILD-TYPE" 
     TCGA-05-4418      TCGA-05-4420      TCGA-05-4424      TCGA-05-4426 
"HYAL4 WILD-TYPE" "HYAL4 WILD-TYPE" "HYAL4 WILD-TYPE" "HYAL4 WILD-TYPE" 
     TCGA-05-4427      TCGA-05-4430      TCGA-05-4432      TCGA-05-4433 
"HYAL4 WILD-TYPE" "HYAL4 WILD-TYPE" "HYAL4 WILD-TYPE" "HYAL4 WILD-TYPE" 
     TCGA-05-4434      TCGA-05-5420      TCGA-05-5423      TCGA-05-5425 
"HYAL4 WILD-TYPE" "HYAL4 WILD-TYPE" "HYAL4 WILD-TYPE" "HYAL4 WILD-TYPE" 
     TCGA-05-5429      TCGA-05-5715      TCGA-35-3615      TCGA-35-4122 
"HYAL4 WILD-TYPE" "HYAL4 WILD-TYPE" "HYAL4 WILD-TYPE" "HYAL4 WILD-TYPE" 
     TCGA-35-4123      TCGA-35-5375      TCGA-38-4625      TCGA-38-4626 
"HYAL4 WILD-TYPE" "HYAL4 WILD-TYPE" "HYAL4 WILD-TYPE" "HYAL4 WILD-TYPE" 
     TCGA-38-4627      TCGA-38-4628      TCGA-38-4629      TCGA-38-4630 
"HYAL4 WILD-TYPE" "HYAL4 WILD-TYPE" "HYAL4 WILD-TYPE" "HYAL4 WILD-TYPE" 
     TCGA-38-4631      TCGA-38-4632      TCGA-38-6178      TCGA-44-2655 
"HYAL4 WILD-TYPE" "HYAL4 WILD-TYPE" "HYAL4 WILD-TYPE" "HYAL4 WILD-TYPE" 
     TCGA-44-2656      TCGA-44-2657      TCGA-44-2659      TCGA-44-2661 
"HYAL4 WILD-TYPE" "HYAL4 WILD-TYPE" "HYAL4 WILD-TYPE" "HYAL4 WILD-TYPE" 
     TCGA-44-2662      TCGA-44-2665      TCGA-44-2666      TCGA-44-2668 
"HYAL4 WILD-TYPE" "HYAL4 WILD-TYPE" "HYAL4 WILD-TYPE" "HYAL4 WILD-TYPE" 
     TCGA-44-3396      TCGA-44-3398      TCGA-44-3918      TCGA-44-3919 
"HYAL4 WILD-TYPE" "HYAL4 WILD-TYPE" "HYAL4 WILD-TYPE" "HYAL4 WILD-TYPE" 
     TCGA-44-4112      TCGA-44-5643      TCGA-44-5645      TCGA-44-6144 
"HYAL4 WILD-TYPE" "HYAL4 WILD-TYPE" "HYAL4 WILD-TYPE" "HYAL4 WILD-TYPE" 
     TCGA-44-6145      TCGA-44-6146      TCGA-44-6147      TCGA-44-6148 
"HYAL4 WILD-TYPE" "HYAL4 WILD-TYPE" "HYAL4 WILD-TYPE" "HYAL4 WILD-TYPE" 
     TCGA-44-6774      TCGA-44-6775      TCGA-44-6776      TCGA-44-6777 
"HYAL4 WILD-TYPE" "HYAL4 WILD-TYPE" "HYAL4 WILD-TYPE"   "HYAL4 MUTATED" 
     TCGA-44-6778      TCGA-44-6779      TCGA-49-4486      TCGA-49-4487 
"HYAL4 WILD-TYPE" "HYAL4 WILD-TYPE" "HYAL4 WILD-TYPE" "HYAL4 WILD-TYPE" 
     TCGA-49-4488      TCGA-49-4490      TCGA-49-4494      TCGA-49-4501 
"HYAL4 WILD-TYPE" "HYAL4 WILD-TYPE" "HYAL4 WILD-TYPE" "HYAL4 WILD-TYPE" 
     TCGA-49-4505      TCGA-49-4506      TCGA-49-4507      TCGA-49-4510 
"HYAL4 WILD-TYPE" "HYAL4 WILD-TYPE" "HYAL4 WILD-TYPE" "HYAL4 WILD-TYPE" 
     TCGA-49-4512      TCGA-49-4514      TCGA-49-6742      TCGA-49-6743 
"HYAL4 WILD-TYPE" "HYAL4 WILD-TYPE" "HYAL4 WILD-TYPE" "HYAL4 WILD-TYPE" 
     TCGA-49-6744      TCGA-49-6745      TCGA-50-5044      TCGA-50-5045 
"HYAL4 WILD-TYPE" "HYAL4 WILD-TYPE" "HYAL4 WILD-TYPE" "HYAL4 WILD-TYPE" 
     TCGA-50-5049      TCGA-50-5051      TCGA-50-5055      TCGA-50-5066 
"HYAL4 WILD-TYPE" "HYAL4 WILD-TYPE" "HYAL4 WILD-TYPE" "HYAL4 WILD-TYPE" 
     TCGA-50-5068      TCGA-50-5072      TCGA-50-5930      TCGA-50-5931 
"HYAL4 WILD-TYPE" "HYAL4 WILD-TYPE" "HYAL4 WILD-TYPE" "HYAL4 WILD-TYPE" 
     TCGA-50-5932      TCGA-50-5933      TCGA-50-5935      TCGA-50-5936 
"HYAL4 WILD-TYPE"   "HYAL4 MUTATED" "HYAL4 WILD-TYPE" "HYAL4 WILD-TYPE" 
     TCGA-50-5939      TCGA-50-5941      TCGA-50-5942      TCGA-50-5944 
"HYAL4 WILD-TYPE" "HYAL4 WILD-TYPE" "HYAL4 WILD-TYPE" "HYAL4 WILD-TYPE" 
     TCGA-50-5946      TCGA-50-6590      TCGA-50-6591      TCGA-50-6592 
"HYAL4 WILD-TYPE" "HYAL4 WILD-TYPE" "HYAL4 WILD-TYPE" "HYAL4 WILD-TYPE" 
     TCGA-50-6593      TCGA-50-6594      TCGA-50-6595      TCGA-50-6597 
"HYAL4 WILD-TYPE" "HYAL4 WILD-TYPE" "HYAL4 WILD-TYPE" "HYAL4 WILD-TYPE" 
     TCGA-55-1592      TCGA-55-1594      TCGA-55-1595      TCGA-55-1596 
"HYAL4 WILD-TYPE" "HYAL4 WILD-TYPE" "HYAL4 WILD-TYPE" "HYAL4 WILD-TYPE" 
     TCGA-55-5899      TCGA-55-6543      TCGA-55-6642      TCGA-55-6712 
"HYAL4 WILD-TYPE" "HYAL4 WILD-TYPE" "HYAL4 WILD-TYPE" "HYAL4 WILD-TYPE" 
     TCGA-64-1676      TCGA-64-1677      TCGA-64-1678      TCGA-64-1680 
"HYAL4 WILD-TYPE" "HYAL4 WILD-TYPE"   "HYAL4 MUTATED" "HYAL4 WILD-TYPE" 
     TCGA-64-5774      TCGA-64-5775      TCGA-64-5778      TCGA-64-5779 
"HYAL4 WILD-TYPE" "HYAL4 WILD-TYPE" "HYAL4 WILD-TYPE" "HYAL4 WILD-TYPE" 
     TCGA-64-5781      TCGA-64-5815      TCGA-67-3770      TCGA-67-3771 
  "HYAL4 MUTATED" "HYAL4 WILD-TYPE" "HYAL4 WILD-TYPE" "HYAL4 WILD-TYPE" 
     TCGA-67-3772      TCGA-67-3773      TCGA-67-3774      TCGA-67-6215 
"HYAL4 WILD-TYPE" "HYAL4 WILD-TYPE" "HYAL4 WILD-TYPE" "HYAL4 WILD-TYPE" 
     TCGA-67-6216      TCGA-67-6217      TCGA-71-6725      TCGA-73-4658 
"HYAL4 WILD-TYPE" "HYAL4 WILD-TYPE" "HYAL4 WILD-TYPE" "HYAL4 WILD-TYPE" 
     TCGA-73-4659      TCGA-73-4662      TCGA-73-4666      TCGA-73-4668 
"HYAL4 WILD-TYPE" "HYAL4 WILD-TYPE" "HYAL4 WILD-TYPE" "HYAL4 WILD-TYPE" 
     TCGA-73-4670      TCGA-73-4675      TCGA-73-4676      TCGA-73-4677 
"HYAL4 WILD-TYPE" "HYAL4 WILD-TYPE" "HYAL4 WILD-TYPE" "HYAL4 WILD-TYPE" 
     TCGA-91-6828      TCGA-91-6829      TCGA-91-6831      TCGA-91-6835 
"HYAL4 WILD-TYPE" "HYAL4 WILD-TYPE" "HYAL4 WILD-TYPE" "HYAL4 WILD-TYPE" 
     TCGA-91-6836 
"HYAL4 WILD-TYPE" 
     TCGA-05-4249      TCGA-05-4250      TCGA-05-4382      TCGA-05-4384 
"HYAL4 WILD-TYPE" "HYAL4 WILD-TYPE" "HYAL4 WILD-TYPE" "HYAL4 WILD-TYPE" 
     TCGA-05-4390      TCGA-05-4396      TCGA-05-4397      TCGA-05-4398 
"HYAL4 WILD-TYPE" "HYAL4 WILD-TYPE" "HYAL4 WILD-TYPE" "HYAL4 WILD-TYPE" 
     TCGA-05-4402      TCGA-05-4405      TCGA-05-4415      TCGA-05-4417 
"HYAL4 WILD-TYPE" "HYAL4 WILD-TYPE" "HYAL4 WILD-TYPE" "HYAL4 WILD-TYPE" 
     TCGA-05-4418      TCGA-05-4420      TCGA-05-4424      TCGA-05-4426 
"HYAL4 WILD-TYPE" "HYAL4 WILD-TYPE" "HYAL4 WILD-TYPE" "HYAL4 WILD-TYPE" 
     TCGA-05-4427      TCGA-05-4430      TCGA-05-4432      TCGA-05-4433 
"HYAL4 WILD-TYPE" "HYAL4 WILD-TYPE" "HYAL4 WILD-TYPE" "HYAL4 WILD-TYPE" 
     TCGA-05-4434      TCGA-05-5420      TCGA-05-5423      TCGA-05-5425 
"HYAL4 WILD-TYPE" "HYAL4 WILD-TYPE" "HYAL4 WILD-TYPE" "HYAL4 WILD-TYPE" 
     TCGA-05-5429      TCGA-05-5715      TCGA-35-3615      TCGA-35-4122 
"HYAL4 WILD-TYPE" "HYAL4 WILD-TYPE" "HYAL4 WILD-TYPE" "HYAL4 WILD-TYPE" 
     TCGA-35-4123      TCGA-35-5375      TCGA-38-4625      TCGA-38-4626 
"HYAL4 WILD-TYPE" "HYAL4 WILD-TYPE" "HYAL4 WILD-TYPE" "HYAL4 WILD-TYPE" 
     TCGA-38-4627      TCGA-38-4628      TCGA-38-4629      TCGA-38-4630 
"HYAL4 WILD-TYPE" "HYAL4 WILD-TYPE" "HYAL4 WILD-TYPE" "HYAL4 WILD-TYPE" 
     TCGA-38-4631      TCGA-38-4632      TCGA-38-6178      TCGA-44-2655 
"HYAL4 WILD-TYPE" "HYAL4 WILD-TYPE" "HYAL4 WILD-TYPE" "HYAL4 WILD-TYPE" 
     TCGA-44-2656      TCGA-44-2657      TCGA-44-2659      TCGA-44-2661 
"HYAL4 WILD-TYPE" "HYAL4 WILD-TYPE" "HYAL4 WILD-TYPE" "HYAL4 WILD-TYPE" 
     TCGA-44-2662      TCGA-44-2665      TCGA-44-2666      TCGA-44-2668 
"HYAL4 WILD-TYPE" "HYAL4 WILD-TYPE" "HYAL4 WILD-TYPE" "HYAL4 WILD-TYPE" 
     TCGA-44-3396      TCGA-44-3398      TCGA-44-3918      TCGA-44-3919 
"HYAL4 WILD-TYPE" "HYAL4 WILD-TYPE" "HYAL4 WILD-TYPE" "HYAL4 WILD-TYPE" 
     TCGA-44-4112      TCGA-44-5643      TCGA-44-5645      TCGA-44-6144 
"HYAL4 WILD-TYPE" "HYAL4 WILD-TYPE" "HYAL4 WILD-TYPE" "HYAL4 WILD-TYPE" 
     TCGA-44-6145      TCGA-44-6146      TCGA-44-6147      TCGA-44-6148 
"HYAL4 WILD-TYPE" "HYAL4 WILD-TYPE" "HYAL4 WILD-TYPE" "HYAL4 WILD-TYPE" 
     TCGA-44-6774      TCGA-44-6775      TCGA-44-6776      TCGA-44-6777 
"HYAL4 WILD-TYPE" "HYAL4 WILD-TYPE" "HYAL4 WILD-TYPE"   "HYAL4 MUTATED" 
     TCGA-44-6778      TCGA-44-6779      TCGA-49-4486      TCGA-49-4487 
"HYAL4 WILD-TYPE" "HYAL4 WILD-TYPE" "HYAL4 WILD-TYPE" "HYAL4 WILD-TYPE" 
     TCGA-49-4488      TCGA-49-4490      TCGA-49-4494      TCGA-49-4501 
"HYAL4 WILD-TYPE" "HYAL4 WILD-TYPE" "HYAL4 WILD-TYPE" "HYAL4 WILD-TYPE" 
     TCGA-49-4505      TCGA-49-4506      TCGA-49-4507      TCGA-49-4510 
"HYAL4 WILD-TYPE" "HYAL4 WILD-TYPE" "HYAL4 WILD-TYPE" "HYAL4 WILD-TYPE" 
     TCGA-49-4512      TCGA-49-4514      TCGA-49-6742      TCGA-49-6743 
"HYAL4 WILD-TYPE" "HYAL4 WILD-TYPE" "HYAL4 WILD-TYPE" "HYAL4 WILD-TYPE" 
     TCGA-49-6744      TCGA-49-6745      TCGA-50-5044      TCGA-50-5045 
"HYAL4 WILD-TYPE" "HYAL4 WILD-TYPE" "HYAL4 WILD-TYPE" "HYAL4 WILD-TYPE" 
     TCGA-50-5049      TCGA-50-5051      TCGA-50-5055      TCGA-50-5066 
"HYAL4 WILD-TYPE" "HYAL4 WILD-TYPE" "HYAL4 WILD-TYPE" "HYAL4 WILD-TYPE" 
     TCGA-50-5068      TCGA-50-5072      TCGA-50-5930      TCGA-50-5931 
"HYAL4 WILD-TYPE" "HYAL4 WILD-TYPE" "HYAL4 WILD-TYPE" "HYAL4 WILD-TYPE" 
     TCGA-50-5932      TCGA-50-5933      TCGA-50-5935      TCGA-50-5936 
"HYAL4 WILD-TYPE"   "HYAL4 MUTATED" "HYAL4 WILD-TYPE" "HYAL4 WILD-TYPE" 
     TCGA-50-5939      TCGA-50-5941      TCGA-50-5942      TCGA-50-5944 
"HYAL4 WILD-TYPE" "HYAL4 WILD-TYPE" "HYAL4 WILD-TYPE" "HYAL4 WILD-TYPE" 
     TCGA-50-5946      TCGA-50-6590      TCGA-50-6591      TCGA-50-6592 
"HYAL4 WILD-TYPE" "HYAL4 WILD-TYPE" "HYAL4 WILD-TYPE" "HYAL4 WILD-TYPE" 
     TCGA-50-6593      TCGA-50-6594      TCGA-50-6595      TCGA-50-6597 
"HYAL4 WILD-TYPE" "HYAL4 WILD-TYPE" "HYAL4 WILD-TYPE" "HYAL4 WILD-TYPE" 
     TCGA-55-1592      TCGA-55-1594      TCGA-55-1595      TCGA-55-1596 
"HYAL4 WILD-TYPE" "HYAL4 WILD-TYPE" "HYAL4 WILD-TYPE" "HYAL4 WILD-TYPE" 
     TCGA-55-5899      TCGA-55-6543      TCGA-55-6642      TCGA-55-6712 
"HYAL4 WILD-TYPE" "HYAL4 WILD-TYPE" "HYAL4 WILD-TYPE" "HYAL4 WILD-TYPE" 
     TCGA-64-1676      TCGA-64-1677      TCGA-64-1678      TCGA-64-1680 
"HYAL4 WILD-TYPE" "HYAL4 WILD-TYPE"   "HYAL4 MUTATED" "HYAL4 WILD-TYPE" 
     TCGA-64-5774      TCGA-64-5775      TCGA-64-5778      TCGA-64-5779 
"HYAL4 WILD-TYPE" "HYAL4 WILD-TYPE" "HYAL4 WILD-TYPE" "HYAL4 WILD-TYPE" 
     TCGA-64-5781      TCGA-64-5815      TCGA-67-3770      TCGA-67-3771 
  "HYAL4 MUTATED" "HYAL4 WILD-TYPE" "HYAL4 WILD-TYPE" "HYAL4 WILD-TYPE" 
     TCGA-67-3772      TCGA-67-3773      TCGA-67-3774      TCGA-67-6215 
"HYAL4 WILD-TYPE" "HYAL4 WILD-TYPE" "HYAL4 WILD-TYPE" "HYAL4 WILD-TYPE" 
     TCGA-67-6216      TCGA-67-6217      TCGA-71-6725      TCGA-73-4658 
"HYAL4 WILD-TYPE" "HYAL4 WILD-TYPE" "HYAL4 WILD-TYPE" "HYAL4 WILD-TYPE" 
     TCGA-73-4659      TCGA-73-4662      TCGA-73-4666      TCGA-73-4668 
"HYAL4 WILD-TYPE" "HYAL4 WILD-TYPE" "HYAL4 WILD-TYPE" "HYAL4 WILD-TYPE" 
     TCGA-73-4670      TCGA-73-4675      TCGA-73-4676      TCGA-73-4677 
"HYAL4 WILD-TYPE" "HYAL4 WILD-TYPE" "HYAL4 WILD-TYPE" "HYAL4 WILD-TYPE" 
     TCGA-91-6828      TCGA-91-6829      TCGA-91-6831      TCGA-91-6835 
"HYAL4 WILD-TYPE" "HYAL4 WILD-TYPE" "HYAL4 WILD-TYPE" "HYAL4 WILD-TYPE" 
     TCGA-91-6836 
"HYAL4 WILD-TYPE" 
[1] "hr=" "2.1"
D228V2, continuous
D228V3, binary
[1] "tbl2"
                 cls
clus              [,1] [,2]
  HYAL4 MUTATED      3    1
  HYAL4 WILD-TYPE   90   78
        clus
vv       HYAL4 MUTATED HYAL4 WILD-TYPE
  FEMALE             3              90
  MALE               1              78
D228V4, continuous
D228V5, multiclass
D228V6, multiclass
    clus
vv   HYAL4 MUTATED HYAL4 WILD-TYPE
  T1             0              41
  T2             3             105
  T3             0              14
  T4             1               7
D228V7, multiclass
       clus
vv      HYAL4 MUTATED HYAL4 WILD-TYPE
  N0                2              93
  N1                0              37
  N2+N3             1              34
D228V8, multiclass
    clus
vv   HYAL4 MUTATED HYAL4 WILD-TYPE
  M0             3             134
  M1             0               9
  MX             1              21
D228V9, multiclass
     clus
vv    HYAL4 MUTATED HYAL4 WILD-TYPE
  I               2              86
  II              1              32
  III             1              38
  IV              0               9
D228V10, binary
[1] "tbl2"
                 cls
clus              [,1] [,2]
  HYAL4 MUTATED      2    2
  HYAL4 WILD-TYPE   14  154
     clus
vv    HYAL4 MUTATED HYAL4 WILD-TYPE
  NO              2              14
  YES             2             154
D228V11, continuous
D228V12, continuous
D228V13, multiclass
                                             clus
vv                                            HYAL4 MUTATED HYAL4 WILD-TYPE
  CURRENT REFORMED SMOKER FOR < OR = 15 YEARS             2              60
  CURRENT REFORMED SMOKER FOR > 15 YEARS                  1              45
  CURRENT SMOKER                                          0              28
  LIFELONG NON-SMOKER                                     0              24
D228V14, continuous

Clustering(229) Variable = ZNF578 MUTATION ANALYSIS
D229V1, survival
                  sevent
clus2               0  1
  ZNF578 MUTATED    2  2
  ZNF578 WILD-TYPE 97 48
  ZNF578 MUTATED ZNF578 WILD-TYPE 
               4              145 
  ZNF578 MUTATED ZNF578 WILD-TYPE 
               2               48 
$`ZNF578 MUTATED`
TCGA-05-4405 TCGA-38-4629 TCGA-50-5049 TCGA-50-6590 
       20.05        28.37        48.82        42.31 

$`ZNF578 WILD-TYPE`
TCGA-05-4249 TCGA-05-4250 TCGA-05-4382 TCGA-05-4384 TCGA-05-4390 TCGA-05-4396 
       38.07         3.98        19.92        14.01        37.02         9.96 
TCGA-05-4397 TCGA-05-4398 TCGA-05-4402 TCGA-05-4415 TCGA-05-4417 TCGA-05-4418 
       24.03        47.05         8.02         2.96        14.93         8.98 
TCGA-05-4420 TCGA-05-4424 TCGA-05-4426 TCGA-05-4427 TCGA-05-4430 TCGA-05-4432 
       29.95        30.02        26.01        26.01        25.02        25.02 
TCGA-05-4433 TCGA-05-4434 TCGA-05-5420 TCGA-05-5423 TCGA-05-5425 TCGA-05-5429 
       24.00        15.02         1.02         4.96         2.96         0.99 
TCGA-05-5715 TCGA-35-3615 TCGA-35-4122 TCGA-35-4123 TCGA-35-5375 TCGA-38-4625 
        2.04         0.46         7.36         5.95         8.68        47.61 
TCGA-38-4626 TCGA-38-4627 TCGA-38-4628 TCGA-38-4630 TCGA-38-4631 TCGA-38-4632 
       85.32        37.71        49.02        35.28        11.64        44.61 
TCGA-38-6178 TCGA-44-2655 TCGA-44-2656 TCGA-44-2657 TCGA-44-2659 TCGA-44-2661 
        5.19        18.87        19.10        13.15        17.39         3.39 
TCGA-44-2662 TCGA-44-2665 TCGA-44-2666 TCGA-44-2668 TCGA-44-3396 TCGA-44-3398 
       15.78        13.15         3.19         8.09        10.22         8.32 
TCGA-44-3918 TCGA-44-3919 TCGA-44-4112 TCGA-44-5643 TCGA-44-5645 TCGA-44-6144 
        6.44         6.21         4.60         3.48         6.84         0.30 
TCGA-44-6145 TCGA-44-6146 TCGA-44-6147 TCGA-44-6148 TCGA-44-6774 TCGA-44-6775 
        3.35         9.93         7.76         3.12         5.42         2.70 
TCGA-44-6776 TCGA-44-6777 TCGA-44-6778 TCGA-44-6779 TCGA-49-4486 TCGA-49-4487 
       63.72        32.45        36.49        16.41        76.21        28.11 
TCGA-49-4488 TCGA-49-4490 TCGA-49-4494 TCGA-49-4501 TCGA-49-4505 TCGA-49-4506 
       28.57        12.66        35.54        46.72        14.07        32.84 
TCGA-49-4507 TCGA-49-4510 TCGA-49-4512 TCGA-49-4514 TCGA-49-6742 TCGA-49-6743 
        8.81        29.46        29.75        43.20        15.02        12.13 
TCGA-49-6744 TCGA-49-6745 TCGA-50-5044 TCGA-50-5045 TCGA-50-5051 TCGA-50-5055 
       12.99         4.93        20.48        71.47        14.96        25.81 
TCGA-50-5066 TCGA-50-5068 TCGA-50-5072 TCGA-50-5930 TCGA-50-5931 TCGA-50-5932 
        9.76        49.28         8.05         9.27         8.78        35.87 
TCGA-50-5933 TCGA-50-5935 TCGA-50-5936 TCGA-50-5939 TCGA-50-5941 TCGA-50-5942 
       77.88        21.47         8.45        15.12         9.37         4.44 
TCGA-50-5944 TCGA-50-5946 TCGA-50-6591 TCGA-50-6592 TCGA-50-6593 TCGA-50-6594 
       12.26        11.47         3.88        25.51        11.05        12.16 
TCGA-50-6595 TCGA-50-6597 TCGA-55-1592 TCGA-55-1594 TCGA-55-1595 TCGA-55-1596 
        6.21        33.37        23.05        38.73        48.62        45.17 
TCGA-55-5899 TCGA-55-6543 TCGA-55-6642 TCGA-55-6712 TCGA-64-1676 TCGA-64-1677 
        2.86         0.07        32.61         0.79        56.81        20.65 
TCGA-64-1678 TCGA-64-1680 TCGA-64-5774 TCGA-64-5775 TCGA-64-5778 TCGA-64-5779 
       39.09        37.02        83.84         0.10        30.44        16.67 
TCGA-64-5781 TCGA-64-5815 TCGA-67-3770 TCGA-67-3771 TCGA-67-3772 TCGA-67-3773 
       39.52         7.33         0.99         1.97         0.59         2.04 
TCGA-67-3774 TCGA-67-6215 TCGA-67-6216 TCGA-67-6217 TCGA-71-6725 TCGA-73-4658 
        0.59         0.89         0.69        13.87         2.01        52.57 
TCGA-73-4659 TCGA-73-4662 TCGA-73-4666 TCGA-73-4668 TCGA-73-4670 TCGA-73-4675 
       23.38        29.95        20.28        15.35         0.46         1.32 
TCGA-73-4676 TCGA-73-4677 TCGA-91-6828 TCGA-91-6829 TCGA-91-6831 TCGA-91-6835 
        4.01         1.25         1.22        41.33         1.28         1.15 
TCGA-91-6836 
        0.36 

  ZNF578 MUTATED ZNF578 WILD-TYPE 
           20.05             0.07 
  ZNF578 MUTATED ZNF578 WILD-TYPE 
           48.82            85.32 
  ZNF578 MUTATED ZNF578 WILD-TYPE 
           35.34            13.15 
[1] "20.1 - 48.8 (35.3)" "0.1 - 85.3 (13.2)" 
      TCGA-05-4249       TCGA-05-4250       TCGA-05-4382       TCGA-05-4384 
"ZNF578 WILD-TYPE" "ZNF578 WILD-TYPE" "ZNF578 WILD-TYPE" "ZNF578 WILD-TYPE" 
      TCGA-05-4390       TCGA-05-4396       TCGA-05-4397       TCGA-05-4398 
"ZNF578 WILD-TYPE" "ZNF578 WILD-TYPE" "ZNF578 WILD-TYPE" "ZNF578 WILD-TYPE" 
      TCGA-05-4402       TCGA-05-4405       TCGA-05-4415       TCGA-05-4417 
"ZNF578 WILD-TYPE"   "ZNF578 MUTATED" "ZNF578 WILD-TYPE" "ZNF578 WILD-TYPE" 
      TCGA-05-4418       TCGA-05-4420       TCGA-05-4424       TCGA-05-4426 
"ZNF578 WILD-TYPE" "ZNF578 WILD-TYPE" "ZNF578 WILD-TYPE" "ZNF578 WILD-TYPE" 
      TCGA-05-4427       TCGA-05-4430       TCGA-05-4432       TCGA-05-4433 
"ZNF578 WILD-TYPE" "ZNF578 WILD-TYPE" "ZNF578 WILD-TYPE" "ZNF578 WILD-TYPE" 
      TCGA-05-4434       TCGA-05-5420       TCGA-05-5423       TCGA-05-5425 
"ZNF578 WILD-TYPE" "ZNF578 WILD-TYPE" "ZNF578 WILD-TYPE" "ZNF578 WILD-TYPE" 
      TCGA-05-5429       TCGA-05-5715       TCGA-35-3615       TCGA-35-4122 
"ZNF578 WILD-TYPE" "ZNF578 WILD-TYPE" "ZNF578 WILD-TYPE" "ZNF578 WILD-TYPE" 
      TCGA-35-4123       TCGA-35-5375       TCGA-38-4625       TCGA-38-4626 
"ZNF578 WILD-TYPE" "ZNF578 WILD-TYPE" "ZNF578 WILD-TYPE" "ZNF578 WILD-TYPE" 
      TCGA-38-4627       TCGA-38-4628       TCGA-38-4629       TCGA-38-4630 
"ZNF578 WILD-TYPE" "ZNF578 WILD-TYPE"   "ZNF578 MUTATED" "ZNF578 WILD-TYPE" 
      TCGA-38-4631       TCGA-38-4632       TCGA-38-6178       TCGA-44-2655 
"ZNF578 WILD-TYPE" "ZNF578 WILD-TYPE" "ZNF578 WILD-TYPE" "ZNF578 WILD-TYPE" 
      TCGA-44-2656       TCGA-44-2657       TCGA-44-2659       TCGA-44-2661 
"ZNF578 WILD-TYPE" "ZNF578 WILD-TYPE" "ZNF578 WILD-TYPE" "ZNF578 WILD-TYPE" 
      TCGA-44-2662       TCGA-44-2665       TCGA-44-2666       TCGA-44-2668 
"ZNF578 WILD-TYPE" "ZNF578 WILD-TYPE" "ZNF578 WILD-TYPE" "ZNF578 WILD-TYPE" 
      TCGA-44-3396       TCGA-44-3398       TCGA-44-3918       TCGA-44-3919 
"ZNF578 WILD-TYPE" "ZNF578 WILD-TYPE" "ZNF578 WILD-TYPE" "ZNF578 WILD-TYPE" 
      TCGA-44-4112       TCGA-44-5643       TCGA-44-5645       TCGA-44-6144 
"ZNF578 WILD-TYPE" "ZNF578 WILD-TYPE" "ZNF578 WILD-TYPE" "ZNF578 WILD-TYPE" 
      TCGA-44-6145       TCGA-44-6146       TCGA-44-6147       TCGA-44-6148 
"ZNF578 WILD-TYPE" "ZNF578 WILD-TYPE" "ZNF578 WILD-TYPE" "ZNF578 WILD-TYPE" 
      TCGA-44-6774       TCGA-44-6775       TCGA-44-6776       TCGA-44-6777 
"ZNF578 WILD-TYPE" "ZNF578 WILD-TYPE" "ZNF578 WILD-TYPE" "ZNF578 WILD-TYPE" 
      TCGA-44-6778       TCGA-44-6779       TCGA-49-4486       TCGA-49-4487 
"ZNF578 WILD-TYPE" "ZNF578 WILD-TYPE" "ZNF578 WILD-TYPE" "ZNF578 WILD-TYPE" 
      TCGA-49-4488       TCGA-49-4490       TCGA-49-4494       TCGA-49-4501 
"ZNF578 WILD-TYPE" "ZNF578 WILD-TYPE" "ZNF578 WILD-TYPE" "ZNF578 WILD-TYPE" 
      TCGA-49-4505       TCGA-49-4506       TCGA-49-4507       TCGA-49-4510 
"ZNF578 WILD-TYPE" "ZNF578 WILD-TYPE" "ZNF578 WILD-TYPE" "ZNF578 WILD-TYPE" 
      TCGA-49-4512       TCGA-49-4514       TCGA-49-6742       TCGA-49-6743 
"ZNF578 WILD-TYPE" "ZNF578 WILD-TYPE" "ZNF578 WILD-TYPE" "ZNF578 WILD-TYPE" 
      TCGA-49-6744       TCGA-49-6745       TCGA-50-5044       TCGA-50-5045 
"ZNF578 WILD-TYPE" "ZNF578 WILD-TYPE" "ZNF578 WILD-TYPE" "ZNF578 WILD-TYPE" 
      TCGA-50-5049       TCGA-50-5051       TCGA-50-5055       TCGA-50-5066 
  "ZNF578 MUTATED" "ZNF578 WILD-TYPE" "ZNF578 WILD-TYPE" "ZNF578 WILD-TYPE" 
      TCGA-50-5068       TCGA-50-5072       TCGA-50-5930       TCGA-50-5931 
"ZNF578 WILD-TYPE" "ZNF578 WILD-TYPE" "ZNF578 WILD-TYPE" "ZNF578 WILD-TYPE" 
      TCGA-50-5932       TCGA-50-5933       TCGA-50-5935       TCGA-50-5936 
"ZNF578 WILD-TYPE" "ZNF578 WILD-TYPE" "ZNF578 WILD-TYPE" "ZNF578 WILD-TYPE" 
      TCGA-50-5939       TCGA-50-5941       TCGA-50-5942       TCGA-50-5944 
"ZNF578 WILD-TYPE" "ZNF578 WILD-TYPE" "ZNF578 WILD-TYPE" "ZNF578 WILD-TYPE" 
      TCGA-50-5946       TCGA-50-6590       TCGA-50-6591       TCGA-50-6592 
"ZNF578 WILD-TYPE"   "ZNF578 MUTATED" "ZNF578 WILD-TYPE" "ZNF578 WILD-TYPE" 
      TCGA-50-6593       TCGA-50-6594       TCGA-50-6595       TCGA-50-6597 
"ZNF578 WILD-TYPE" "ZNF578 WILD-TYPE" "ZNF578 WILD-TYPE" "ZNF578 WILD-TYPE" 
      TCGA-55-1592       TCGA-55-1594       TCGA-55-1595       TCGA-55-1596 
"ZNF578 WILD-TYPE" "ZNF578 WILD-TYPE" "ZNF578 WILD-TYPE" "ZNF578 WILD-TYPE" 
      TCGA-55-5899       TCGA-55-6543       TCGA-55-6642       TCGA-55-6712 
"ZNF578 WILD-TYPE" "ZNF578 WILD-TYPE" "ZNF578 WILD-TYPE" "ZNF578 WILD-TYPE" 
      TCGA-64-1676       TCGA-64-1677       TCGA-64-1678       TCGA-64-1680 
"ZNF578 WILD-TYPE" "ZNF578 WILD-TYPE" "ZNF578 WILD-TYPE" "ZNF578 WILD-TYPE" 
      TCGA-64-5774       TCGA-64-5775       TCGA-64-5778       TCGA-64-5779 
"ZNF578 WILD-TYPE" "ZNF578 WILD-TYPE" "ZNF578 WILD-TYPE" "ZNF578 WILD-TYPE" 
      TCGA-64-5781       TCGA-64-5815       TCGA-67-3770       TCGA-67-3771 
"ZNF578 WILD-TYPE" "ZNF578 WILD-TYPE" "ZNF578 WILD-TYPE" "ZNF578 WILD-TYPE" 
      TCGA-67-3772       TCGA-67-3773       TCGA-67-3774       TCGA-67-6215 
"ZNF578 WILD-TYPE" "ZNF578 WILD-TYPE" "ZNF578 WILD-TYPE" "ZNF578 WILD-TYPE" 
      TCGA-67-6216       TCGA-67-6217       TCGA-71-6725       TCGA-73-4658 
"ZNF578 WILD-TYPE" "ZNF578 WILD-TYPE" "ZNF578 WILD-TYPE" "ZNF578 WILD-TYPE" 
      TCGA-73-4659       TCGA-73-4662       TCGA-73-4666       TCGA-73-4668 
"ZNF578 WILD-TYPE" "ZNF578 WILD-TYPE" "ZNF578 WILD-TYPE" "ZNF578 WILD-TYPE" 
      TCGA-73-4670       TCGA-73-4675       TCGA-73-4676       TCGA-73-4677 
"ZNF578 WILD-TYPE" "ZNF578 WILD-TYPE" "ZNF578 WILD-TYPE" "ZNF578 WILD-TYPE" 
      TCGA-91-6828       TCGA-91-6829       TCGA-91-6831       TCGA-91-6835 
"ZNF578 WILD-TYPE" "ZNF578 WILD-TYPE" "ZNF578 WILD-TYPE" "ZNF578 WILD-TYPE" 
      TCGA-91-6836 
"ZNF578 WILD-TYPE" 
      TCGA-05-4249       TCGA-05-4250       TCGA-05-4382       TCGA-05-4384 
"ZNF578 WILD-TYPE" "ZNF578 WILD-TYPE" "ZNF578 WILD-TYPE" "ZNF578 WILD-TYPE" 
      TCGA-05-4390       TCGA-05-4396       TCGA-05-4397       TCGA-05-4398 
"ZNF578 WILD-TYPE" "ZNF578 WILD-TYPE" "ZNF578 WILD-TYPE" "ZNF578 WILD-TYPE" 
      TCGA-05-4402       TCGA-05-4405       TCGA-05-4415       TCGA-05-4417 
"ZNF578 WILD-TYPE"   "ZNF578 MUTATED" "ZNF578 WILD-TYPE" "ZNF578 WILD-TYPE" 
      TCGA-05-4418       TCGA-05-4420       TCGA-05-4424       TCGA-05-4426 
"ZNF578 WILD-TYPE" "ZNF578 WILD-TYPE" "ZNF578 WILD-TYPE" "ZNF578 WILD-TYPE" 
      TCGA-05-4427       TCGA-05-4430       TCGA-05-4432       TCGA-05-4433 
"ZNF578 WILD-TYPE" "ZNF578 WILD-TYPE" "ZNF578 WILD-TYPE" "ZNF578 WILD-TYPE" 
      TCGA-05-4434       TCGA-05-5420       TCGA-05-5423       TCGA-05-5425 
"ZNF578 WILD-TYPE" "ZNF578 WILD-TYPE" "ZNF578 WILD-TYPE" "ZNF578 WILD-TYPE" 
      TCGA-05-5429       TCGA-05-5715       TCGA-35-3615       TCGA-35-4122 
"ZNF578 WILD-TYPE" "ZNF578 WILD-TYPE" "ZNF578 WILD-TYPE" "ZNF578 WILD-TYPE" 
      TCGA-35-4123       TCGA-35-5375       TCGA-38-4625       TCGA-38-4626 
"ZNF578 WILD-TYPE" "ZNF578 WILD-TYPE" "ZNF578 WILD-TYPE" "ZNF578 WILD-TYPE" 
      TCGA-38-4627       TCGA-38-4628       TCGA-38-4629       TCGA-38-4630 
"ZNF578 WILD-TYPE" "ZNF578 WILD-TYPE"   "ZNF578 MUTATED" "ZNF578 WILD-TYPE" 
      TCGA-38-4631       TCGA-38-4632       TCGA-38-6178       TCGA-44-2655 
"ZNF578 WILD-TYPE" "ZNF578 WILD-TYPE" "ZNF578 WILD-TYPE" "ZNF578 WILD-TYPE" 
      TCGA-44-2656       TCGA-44-2657       TCGA-44-2659       TCGA-44-2661 
"ZNF578 WILD-TYPE" "ZNF578 WILD-TYPE" "ZNF578 WILD-TYPE" "ZNF578 WILD-TYPE" 
      TCGA-44-2662       TCGA-44-2665       TCGA-44-2666       TCGA-44-2668 
"ZNF578 WILD-TYPE" "ZNF578 WILD-TYPE" "ZNF578 WILD-TYPE" "ZNF578 WILD-TYPE" 
      TCGA-44-3396       TCGA-44-3398       TCGA-44-3918       TCGA-44-3919 
"ZNF578 WILD-TYPE" "ZNF578 WILD-TYPE" "ZNF578 WILD-TYPE" "ZNF578 WILD-TYPE" 
      TCGA-44-4112       TCGA-44-5643       TCGA-44-5645       TCGA-44-6144 
"ZNF578 WILD-TYPE" "ZNF578 WILD-TYPE" "ZNF578 WILD-TYPE" "ZNF578 WILD-TYPE" 
      TCGA-44-6145       TCGA-44-6146       TCGA-44-6147       TCGA-44-6148 
"ZNF578 WILD-TYPE" "ZNF578 WILD-TYPE" "ZNF578 WILD-TYPE" "ZNF578 WILD-TYPE" 
      TCGA-44-6774       TCGA-44-6775       TCGA-44-6776       TCGA-44-6777 
"ZNF578 WILD-TYPE" "ZNF578 WILD-TYPE" "ZNF578 WILD-TYPE" "ZNF578 WILD-TYPE" 
      TCGA-44-6778       TCGA-44-6779       TCGA-49-4486       TCGA-49-4487 
"ZNF578 WILD-TYPE" "ZNF578 WILD-TYPE" "ZNF578 WILD-TYPE" "ZNF578 WILD-TYPE" 
      TCGA-49-4488       TCGA-49-4490       TCGA-49-4494       TCGA-49-4501 
"ZNF578 WILD-TYPE" "ZNF578 WILD-TYPE" "ZNF578 WILD-TYPE" "ZNF578 WILD-TYPE" 
      TCGA-49-4505       TCGA-49-4506       TCGA-49-4507       TCGA-49-4510 
"ZNF578 WILD-TYPE" "ZNF578 WILD-TYPE" "ZNF578 WILD-TYPE" "ZNF578 WILD-TYPE" 
      TCGA-49-4512       TCGA-49-4514       TCGA-49-6742       TCGA-49-6743 
"ZNF578 WILD-TYPE" "ZNF578 WILD-TYPE" "ZNF578 WILD-TYPE" "ZNF578 WILD-TYPE" 
      TCGA-49-6744       TCGA-49-6745       TCGA-50-5044       TCGA-50-5045 
"ZNF578 WILD-TYPE" "ZNF578 WILD-TYPE" "ZNF578 WILD-TYPE" "ZNF578 WILD-TYPE" 
      TCGA-50-5049       TCGA-50-5051       TCGA-50-5055       TCGA-50-5066 
  "ZNF578 MUTATED" "ZNF578 WILD-TYPE" "ZNF578 WILD-TYPE" "ZNF578 WILD-TYPE" 
      TCGA-50-5068       TCGA-50-5072       TCGA-50-5930       TCGA-50-5931 
"ZNF578 WILD-TYPE" "ZNF578 WILD-TYPE" "ZNF578 WILD-TYPE" "ZNF578 WILD-TYPE" 
      TCGA-50-5932       TCGA-50-5933       TCGA-50-5935       TCGA-50-5936 
"ZNF578 WILD-TYPE" "ZNF578 WILD-TYPE" "ZNF578 WILD-TYPE" "ZNF578 WILD-TYPE" 
      TCGA-50-5939       TCGA-50-5941       TCGA-50-5942       TCGA-50-5944 
"ZNF578 WILD-TYPE" "ZNF578 WILD-TYPE" "ZNF578 WILD-TYPE" "ZNF578 WILD-TYPE" 
      TCGA-50-5946       TCGA-50-6590       TCGA-50-6591       TCGA-50-6592 
"ZNF578 WILD-TYPE"   "ZNF578 MUTATED" "ZNF578 WILD-TYPE" "ZNF578 WILD-TYPE" 
      TCGA-50-6593       TCGA-50-6594       TCGA-50-6595       TCGA-50-6597 
"ZNF578 WILD-TYPE" "ZNF578 WILD-TYPE" "ZNF578 WILD-TYPE" "ZNF578 WILD-TYPE" 
      TCGA-55-1592       TCGA-55-1594       TCGA-55-1595       TCGA-55-1596 
"ZNF578 WILD-TYPE" "ZNF578 WILD-TYPE" "ZNF578 WILD-TYPE" "ZNF578 WILD-TYPE" 
      TCGA-55-5899       TCGA-55-6543       TCGA-55-6642       TCGA-55-6712 
"ZNF578 WILD-TYPE" "ZNF578 WILD-TYPE" "ZNF578 WILD-TYPE" "ZNF578 WILD-TYPE" 
      TCGA-64-1676       TCGA-64-1677       TCGA-64-1678       TCGA-64-1680 
"ZNF578 WILD-TYPE" "ZNF578 WILD-TYPE" "ZNF578 WILD-TYPE" "ZNF578 WILD-TYPE" 
      TCGA-64-5774       TCGA-64-5775       TCGA-64-5778       TCGA-64-5779 
"ZNF578 WILD-TYPE" "ZNF578 WILD-TYPE" "ZNF578 WILD-TYPE" "ZNF578 WILD-TYPE" 
      TCGA-64-5781       TCGA-64-5815       TCGA-67-3770       TCGA-67-3771 
"ZNF578 WILD-TYPE" "ZNF578 WILD-TYPE" "ZNF578 WILD-TYPE" "ZNF578 WILD-TYPE" 
      TCGA-67-3772       TCGA-67-3773       TCGA-67-3774       TCGA-67-6215 
"ZNF578 WILD-TYPE" "ZNF578 WILD-TYPE" "ZNF578 WILD-TYPE" "ZNF578 WILD-TYPE" 
      TCGA-67-6216       TCGA-67-6217       TCGA-71-6725       TCGA-73-4658 
"ZNF578 WILD-TYPE" "ZNF578 WILD-TYPE" "ZNF578 WILD-TYPE" "ZNF578 WILD-TYPE" 
      TCGA-73-4659       TCGA-73-4662       TCGA-73-4666       TCGA-73-4668 
"ZNF578 WILD-TYPE" "ZNF578 WILD-TYPE" "ZNF578 WILD-TYPE" "ZNF578 WILD-TYPE" 
      TCGA-73-4670       TCGA-73-4675       TCGA-73-4676       TCGA-73-4677 
"ZNF578 WILD-TYPE" "ZNF578 WILD-TYPE" "ZNF578 WILD-TYPE" "ZNF578 WILD-TYPE" 
      TCGA-91-6828       TCGA-91-6829       TCGA-91-6831       TCGA-91-6835 
"ZNF578 WILD-TYPE" "ZNF578 WILD-TYPE" "ZNF578 WILD-TYPE" "ZNF578 WILD-TYPE" 
      TCGA-91-6836 
"ZNF578 WILD-TYPE" 
      TCGA-05-4249       TCGA-05-4250       TCGA-05-4382       TCGA-05-4384 
"ZNF578 WILD-TYPE" "ZNF578 WILD-TYPE" "ZNF578 WILD-TYPE" "ZNF578 WILD-TYPE" 
      TCGA-05-4390       TCGA-05-4396       TCGA-05-4397       TCGA-05-4398 
"ZNF578 WILD-TYPE" "ZNF578 WILD-TYPE" "ZNF578 WILD-TYPE" "ZNF578 WILD-TYPE" 
      TCGA-05-4402       TCGA-05-4405       TCGA-05-4415       TCGA-05-4417 
"ZNF578 WILD-TYPE"   "ZNF578 MUTATED" "ZNF578 WILD-TYPE" "ZNF578 WILD-TYPE" 
      TCGA-05-4418       TCGA-05-4420       TCGA-05-4424       TCGA-05-4426 
"ZNF578 WILD-TYPE" "ZNF578 WILD-TYPE" "ZNF578 WILD-TYPE" "ZNF578 WILD-TYPE" 
      TCGA-05-4427       TCGA-05-4430       TCGA-05-4432       TCGA-05-4433 
"ZNF578 WILD-TYPE" "ZNF578 WILD-TYPE" "ZNF578 WILD-TYPE" "ZNF578 WILD-TYPE" 
      TCGA-05-4434       TCGA-05-5420       TCGA-05-5423       TCGA-05-5425 
"ZNF578 WILD-TYPE" "ZNF578 WILD-TYPE" "ZNF578 WILD-TYPE" "ZNF578 WILD-TYPE" 
      TCGA-05-5429       TCGA-05-5715       TCGA-35-3615       TCGA-35-4122 
"ZNF578 WILD-TYPE" "ZNF578 WILD-TYPE" "ZNF578 WILD-TYPE" "ZNF578 WILD-TYPE" 
      TCGA-35-4123       TCGA-35-5375       TCGA-38-4625       TCGA-38-4626 
"ZNF578 WILD-TYPE" "ZNF578 WILD-TYPE" "ZNF578 WILD-TYPE" "ZNF578 WILD-TYPE" 
      TCGA-38-4627       TCGA-38-4628       TCGA-38-4629       TCGA-38-4630 
"ZNF578 WILD-TYPE" "ZNF578 WILD-TYPE"   "ZNF578 MUTATED" "ZNF578 WILD-TYPE" 
      TCGA-38-4631       TCGA-38-4632       TCGA-38-6178       TCGA-44-2655 
"ZNF578 WILD-TYPE" "ZNF578 WILD-TYPE" "ZNF578 WILD-TYPE" "ZNF578 WILD-TYPE" 
      TCGA-44-2656       TCGA-44-2657       TCGA-44-2659       TCGA-44-2661 
"ZNF578 WILD-TYPE" "ZNF578 WILD-TYPE" "ZNF578 WILD-TYPE" "ZNF578 WILD-TYPE" 
      TCGA-44-2662       TCGA-44-2665       TCGA-44-2666       TCGA-44-2668 
"ZNF578 WILD-TYPE" "ZNF578 WILD-TYPE" "ZNF578 WILD-TYPE" "ZNF578 WILD-TYPE" 
      TCGA-44-3396       TCGA-44-3398       TCGA-44-3918       TCGA-44-3919 
"ZNF578 WILD-TYPE" "ZNF578 WILD-TYPE" "ZNF578 WILD-TYPE" "ZNF578 WILD-TYPE" 
      TCGA-44-4112       TCGA-44-5643       TCGA-44-5645       TCGA-44-6144 
"ZNF578 WILD-TYPE" "ZNF578 WILD-TYPE" "ZNF578 WILD-TYPE" "ZNF578 WILD-TYPE" 
      TCGA-44-6145       TCGA-44-6146       TCGA-44-6147       TCGA-44-6148 
"ZNF578 WILD-TYPE" "ZNF578 WILD-TYPE" "ZNF578 WILD-TYPE" "ZNF578 WILD-TYPE" 
      TCGA-44-6774       TCGA-44-6775       TCGA-44-6776       TCGA-44-6777 
"ZNF578 WILD-TYPE" "ZNF578 WILD-TYPE" "ZNF578 WILD-TYPE" "ZNF578 WILD-TYPE" 
      TCGA-44-6778       TCGA-44-6779       TCGA-49-4486       TCGA-49-4487 
"ZNF578 WILD-TYPE" "ZNF578 WILD-TYPE" "ZNF578 WILD-TYPE" "ZNF578 WILD-TYPE" 
      TCGA-49-4488       TCGA-49-4490       TCGA-49-4494       TCGA-49-4501 
"ZNF578 WILD-TYPE" "ZNF578 WILD-TYPE" "ZNF578 WILD-TYPE" "ZNF578 WILD-TYPE" 
      TCGA-49-4505       TCGA-49-4506       TCGA-49-4507       TCGA-49-4510 
"ZNF578 WILD-TYPE" "ZNF578 WILD-TYPE" "ZNF578 WILD-TYPE" "ZNF578 WILD-TYPE" 
      TCGA-49-4512       TCGA-49-4514       TCGA-49-6742       TCGA-49-6743 
"ZNF578 WILD-TYPE" "ZNF578 WILD-TYPE" "ZNF578 WILD-TYPE" "ZNF578 WILD-TYPE" 
      TCGA-49-6744       TCGA-49-6745       TCGA-50-5044       TCGA-50-5045 
"ZNF578 WILD-TYPE" "ZNF578 WILD-TYPE" "ZNF578 WILD-TYPE" "ZNF578 WILD-TYPE" 
      TCGA-50-5049       TCGA-50-5051       TCGA-50-5055       TCGA-50-5066 
  "ZNF578 MUTATED" "ZNF578 WILD-TYPE" "ZNF578 WILD-TYPE" "ZNF578 WILD-TYPE" 
      TCGA-50-5068       TCGA-50-5072       TCGA-50-5930       TCGA-50-5931 
"ZNF578 WILD-TYPE" "ZNF578 WILD-TYPE" "ZNF578 WILD-TYPE" "ZNF578 WILD-TYPE" 
      TCGA-50-5932       TCGA-50-5933       TCGA-50-5935       TCGA-50-5936 
"ZNF578 WILD-TYPE" "ZNF578 WILD-TYPE" "ZNF578 WILD-TYPE" "ZNF578 WILD-TYPE" 
      TCGA-50-5939       TCGA-50-5941       TCGA-50-5942       TCGA-50-5944 
"ZNF578 WILD-TYPE" "ZNF578 WILD-TYPE" "ZNF578 WILD-TYPE" "ZNF578 WILD-TYPE" 
      TCGA-50-5946       TCGA-50-6590       TCGA-50-6591       TCGA-50-6592 
"ZNF578 WILD-TYPE"   "ZNF578 MUTATED" "ZNF578 WILD-TYPE" "ZNF578 WILD-TYPE" 
      TCGA-50-6593       TCGA-50-6594       TCGA-50-6595       TCGA-50-6597 
"ZNF578 WILD-TYPE" "ZNF578 WILD-TYPE" "ZNF578 WILD-TYPE" "ZNF578 WILD-TYPE" 
      TCGA-55-1592       TCGA-55-1594       TCGA-55-1595       TCGA-55-1596 
"ZNF578 WILD-TYPE" "ZNF578 WILD-TYPE" "ZNF578 WILD-TYPE" "ZNF578 WILD-TYPE" 
      TCGA-55-5899       TCGA-55-6543       TCGA-55-6642       TCGA-55-6712 
"ZNF578 WILD-TYPE" "ZNF578 WILD-TYPE" "ZNF578 WILD-TYPE" "ZNF578 WILD-TYPE" 
      TCGA-64-1676       TCGA-64-1677       TCGA-64-1678       TCGA-64-1680 
"ZNF578 WILD-TYPE" "ZNF578 WILD-TYPE" "ZNF578 WILD-TYPE" "ZNF578 WILD-TYPE" 
      TCGA-64-5774       TCGA-64-5775       TCGA-64-5778       TCGA-64-5779 
"ZNF578 WILD-TYPE" "ZNF578 WILD-TYPE" "ZNF578 WILD-TYPE" "ZNF578 WILD-TYPE" 
      TCGA-64-5781       TCGA-64-5815       TCGA-67-3770       TCGA-67-3771 
"ZNF578 WILD-TYPE" "ZNF578 WILD-TYPE" "ZNF578 WILD-TYPE" "ZNF578 WILD-TYPE" 
      TCGA-67-3772       TCGA-67-3773       TCGA-67-3774       TCGA-67-6215 
"ZNF578 WILD-TYPE" "ZNF578 WILD-TYPE" "ZNF578 WILD-TYPE" "ZNF578 WILD-TYPE" 
      TCGA-67-6216       TCGA-67-6217       TCGA-71-6725       TCGA-73-4658 
"ZNF578 WILD-TYPE" "ZNF578 WILD-TYPE" "ZNF578 WILD-TYPE" "ZNF578 WILD-TYPE" 
      TCGA-73-4659       TCGA-73-4662       TCGA-73-4666       TCGA-73-4668 
"ZNF578 WILD-TYPE" "ZNF578 WILD-TYPE" "ZNF578 WILD-TYPE" "ZNF578 WILD-TYPE" 
      TCGA-73-4670       TCGA-73-4675       TCGA-73-4676       TCGA-73-4677 
"ZNF578 WILD-TYPE" "ZNF578 WILD-TYPE" "ZNF578 WILD-TYPE" "ZNF578 WILD-TYPE" 
      TCGA-91-6828       TCGA-91-6829       TCGA-91-6831       TCGA-91-6835 
"ZNF578 WILD-TYPE" "ZNF578 WILD-TYPE" "ZNF578 WILD-TYPE" "ZNF578 WILD-TYPE" 
      TCGA-91-6836 
"ZNF578 WILD-TYPE" 
[1] "hr=" "1.2"
D229V2, continuous
D229V3, binary
[1] "tbl2"
                  cls
clus               [,1] [,2]
  ZNF578 MUTATED      3    2
  ZNF578 WILD-TYPE   90   77
        clus
vv       ZNF578 MUTATED ZNF578 WILD-TYPE
  FEMALE              3               90
  MALE                2               77
D229V4, continuous
D229V5, multiclass
D229V6, multiclass
    clus
vv   ZNF578 MUTATED ZNF578 WILD-TYPE
  T1              0               41
  T2              4              104
  T3              1               13
  T4              0                8
D229V7, multiclass
       clus
vv      ZNF578 MUTATED ZNF578 WILD-TYPE
  N0                 5               90
  N1                 0               37
  N2+N3              0               35
D229V8, multiclass
    clus
vv   ZNF578 MUTATED ZNF578 WILD-TYPE
  M0              5              132
  M1              0                9
  MX              0               22
D229V9, multiclass
     clus
vv    ZNF578 MUTATED ZNF578 WILD-TYPE
  I                4               84
  II               1               32
  III              0               39
  IV               0                9
D229V10, binary
[1] "tbl2"
                  cls
clus               [,1] [,2]
  ZNF578 MUTATED      1    4
  ZNF578 WILD-TYPE   15  152
     clus
vv    ZNF578 MUTATED ZNF578 WILD-TYPE
  NO               1               15
  YES              4              152
D229V11, continuous
D229V12, continuous
D229V13, multiclass
                                             clus
vv                                            ZNF578 MUTATED ZNF578 WILD-TYPE
  CURRENT REFORMED SMOKER FOR < OR = 15 YEARS              3               59
  CURRENT REFORMED SMOKER FOR > 15 YEARS                   0               46
  CURRENT SMOKER                                           1               27
  LIFELONG NON-SMOKER                                      0               24
D229V14, continuous
[1] "Remove cluster labels:" "ZNF578 MUTATED"        
clus
  ZNF578 MUTATED ZNF578 WILD-TYPE 
               1               67 
      TCGA-05-4384       TCGA-05-4390       TCGA-05-4396       TCGA-05-4410 
"ZNF578 WILD-TYPE" "ZNF578 WILD-TYPE" "ZNF578 WILD-TYPE" "ZNF578 WILD-TYPE" 
      TCGA-05-4415       TCGA-05-4417       TCGA-05-4424       TCGA-05-4427 
"ZNF578 WILD-TYPE" "ZNF578 WILD-TYPE" "ZNF578 WILD-TYPE" "ZNF578 WILD-TYPE" 
      TCGA-05-4433       TCGA-05-5420       TCGA-05-5423       TCGA-05-5425 
"ZNF578 WILD-TYPE" "ZNF578 WILD-TYPE" "ZNF578 WILD-TYPE" "ZNF578 WILD-TYPE" 
      TCGA-05-5428       TCGA-35-4122       TCGA-35-4123       TCGA-35-5375 
"ZNF578 WILD-TYPE" "ZNF578 WILD-TYPE" "ZNF578 WILD-TYPE" "ZNF578 WILD-TYPE" 
      TCGA-38-4625       TCGA-38-4626       TCGA-44-2655       TCGA-44-2656 
"ZNF578 WILD-TYPE" "ZNF578 WILD-TYPE" "ZNF578 WILD-TYPE" "ZNF578 WILD-TYPE" 
      TCGA-44-2657       TCGA-44-2659       TCGA-44-2662       TCGA-44-2666 
"ZNF578 WILD-TYPE" "ZNF578 WILD-TYPE" "ZNF578 WILD-TYPE" "ZNF578 WILD-TYPE" 
      TCGA-44-2668       TCGA-44-3396       TCGA-44-3398       TCGA-44-3918 
"ZNF578 WILD-TYPE" "ZNF578 WILD-TYPE" "ZNF578 WILD-TYPE" "ZNF578 WILD-TYPE" 
      TCGA-44-4112       TCGA-44-5645       TCGA-44-6144       TCGA-44-6145 
"ZNF578 WILD-TYPE" "ZNF578 WILD-TYPE" "ZNF578 WILD-TYPE" "ZNF578 WILD-TYPE" 
      TCGA-44-6147       TCGA-44-6148       TCGA-44-6774       TCGA-44-6775 
"ZNF578 WILD-TYPE" "ZNF578 WILD-TYPE" "ZNF578 WILD-TYPE" "ZNF578 WILD-TYPE" 
      TCGA-44-6776       TCGA-44-6777       TCGA-44-6778       TCGA-44-6779 
"ZNF578 WILD-TYPE" "ZNF578 WILD-TYPE" "ZNF578 WILD-TYPE" "ZNF578 WILD-TYPE" 
      TCGA-49-4486       TCGA-49-4494       TCGA-49-4505       TCGA-55-1592 
"ZNF578 WILD-TYPE" "ZNF578 WILD-TYPE" "ZNF578 WILD-TYPE" "ZNF578 WILD-TYPE" 
      TCGA-55-1594       TCGA-55-1595       TCGA-55-1596       TCGA-55-5899 
"ZNF578 WILD-TYPE" "ZNF578 WILD-TYPE" "ZNF578 WILD-TYPE" "ZNF578 WILD-TYPE" 
      TCGA-55-6642       TCGA-55-6712       TCGA-64-1677       TCGA-64-1678 
"ZNF578 WILD-TYPE" "ZNF578 WILD-TYPE" "ZNF578 WILD-TYPE" "ZNF578 WILD-TYPE" 
      TCGA-64-1680       TCGA-64-5774       TCGA-64-5775       TCGA-64-5778 
"ZNF578 WILD-TYPE" "ZNF578 WILD-TYPE" "ZNF578 WILD-TYPE" "ZNF578 WILD-TYPE" 
      TCGA-64-5779       TCGA-64-5781       TCGA-73-4659       TCGA-73-4662 
"ZNF578 WILD-TYPE" "ZNF578 WILD-TYPE" "ZNF578 WILD-TYPE" "ZNF578 WILD-TYPE" 
      TCGA-73-4666       TCGA-73-4668       TCGA-73-4670       TCGA-73-4675 
"ZNF578 WILD-TYPE" "ZNF578 WILD-TYPE" "ZNF578 WILD-TYPE" "ZNF578 WILD-TYPE" 
      TCGA-73-4676       TCGA-91-6829       TCGA-91-6836 
"ZNF578 WILD-TYPE" "ZNF578 WILD-TYPE" "ZNF578 WILD-TYPE" 

Clustering(230) Variable = LIN28B MUTATION ANALYSIS
D230V1, survival
                  sevent
clus2               0  1
  LIN28B MUTATED    2  1
  LIN28B WILD-TYPE 97 49
  LIN28B MUTATED LIN28B WILD-TYPE 
               3              146 
  LIN28B MUTATED LIN28B WILD-TYPE 
               1               49 
$`LIN28B MUTATED`
TCGA-05-4396 TCGA-05-4424 TCGA-44-6778 
        9.96        30.02        36.49 

$`LIN28B WILD-TYPE`
TCGA-05-4249 TCGA-05-4250 TCGA-05-4382 TCGA-05-4384 TCGA-05-4390 TCGA-05-4397 
       38.07         3.98        19.92        14.01        37.02        24.03 
TCGA-05-4398 TCGA-05-4402 TCGA-05-4405 TCGA-05-4415 TCGA-05-4417 TCGA-05-4418 
       47.05         8.02        20.05         2.96        14.93         8.98 
TCGA-05-4420 TCGA-05-4426 TCGA-05-4427 TCGA-05-4430 TCGA-05-4432 TCGA-05-4433 
       29.95        26.01        26.01        25.02        25.02        24.00 
TCGA-05-4434 TCGA-05-5420 TCGA-05-5423 TCGA-05-5425 TCGA-05-5429 TCGA-05-5715 
       15.02         1.02         4.96         2.96         0.99         2.04 
TCGA-35-3615 TCGA-35-4122 TCGA-35-4123 TCGA-35-5375 TCGA-38-4625 TCGA-38-4626 
        0.46         7.36         5.95         8.68        47.61        85.32 
TCGA-38-4627 TCGA-38-4628 TCGA-38-4629 TCGA-38-4630 TCGA-38-4631 TCGA-38-4632 
       37.71        49.02        28.37        35.28        11.64        44.61 
TCGA-38-6178 TCGA-44-2655 TCGA-44-2656 TCGA-44-2657 TCGA-44-2659 TCGA-44-2661 
        5.19        18.87        19.10        13.15        17.39         3.39 
TCGA-44-2662 TCGA-44-2665 TCGA-44-2666 TCGA-44-2668 TCGA-44-3396 TCGA-44-3398 
       15.78        13.15         3.19         8.09        10.22         8.32 
TCGA-44-3918 TCGA-44-3919 TCGA-44-4112 TCGA-44-5643 TCGA-44-5645 TCGA-44-6144 
        6.44         6.21         4.60         3.48         6.84         0.30 
TCGA-44-6145 TCGA-44-6146 TCGA-44-6147 TCGA-44-6148 TCGA-44-6774 TCGA-44-6775 
        3.35         9.93         7.76         3.12         5.42         2.70 
TCGA-44-6776 TCGA-44-6777 TCGA-44-6779 TCGA-49-4486 TCGA-49-4487 TCGA-49-4488 
       63.72        32.45        16.41        76.21        28.11        28.57 
TCGA-49-4490 TCGA-49-4494 TCGA-49-4501 TCGA-49-4505 TCGA-49-4506 TCGA-49-4507 
       12.66        35.54        46.72        14.07        32.84         8.81 
TCGA-49-4510 TCGA-49-4512 TCGA-49-4514 TCGA-49-6742 TCGA-49-6743 TCGA-49-6744 
       29.46        29.75        43.20        15.02        12.13        12.99 
TCGA-49-6745 TCGA-50-5044 TCGA-50-5045 TCGA-50-5049 TCGA-50-5051 TCGA-50-5055 
        4.93        20.48        71.47        48.82        14.96        25.81 
TCGA-50-5066 TCGA-50-5068 TCGA-50-5072 TCGA-50-5930 TCGA-50-5931 TCGA-50-5932 
        9.76        49.28         8.05         9.27         8.78        35.87 
TCGA-50-5933 TCGA-50-5935 TCGA-50-5936 TCGA-50-5939 TCGA-50-5941 TCGA-50-5942 
       77.88        21.47         8.45        15.12         9.37         4.44 
TCGA-50-5944 TCGA-50-5946 TCGA-50-6590 TCGA-50-6591 TCGA-50-6592 TCGA-50-6593 
       12.26        11.47        42.31         3.88        25.51        11.05 
TCGA-50-6594 TCGA-50-6595 TCGA-50-6597 TCGA-55-1592 TCGA-55-1594 TCGA-55-1595 
       12.16         6.21        33.37        23.05        38.73        48.62 
TCGA-55-1596 TCGA-55-5899 TCGA-55-6543 TCGA-55-6642 TCGA-55-6712 TCGA-64-1676 
       45.17         2.86         0.07        32.61         0.79        56.81 
TCGA-64-1677 TCGA-64-1678 TCGA-64-1680 TCGA-64-5774 TCGA-64-5775 TCGA-64-5778 
       20.65        39.09        37.02        83.84         0.10        30.44 
TCGA-64-5779 TCGA-64-5781 TCGA-64-5815 TCGA-67-3770 TCGA-67-3771 TCGA-67-3772 
       16.67        39.52         7.33         0.99         1.97         0.59 
TCGA-67-3773 TCGA-67-3774 TCGA-67-6215 TCGA-67-6216 TCGA-67-6217 TCGA-71-6725 
        2.04         0.59         0.89         0.69        13.87         2.01 
TCGA-73-4658 TCGA-73-4659 TCGA-73-4662 TCGA-73-4666 TCGA-73-4668 TCGA-73-4670 
       52.57        23.38        29.95        20.28        15.35         0.46 
TCGA-73-4675 TCGA-73-4676 TCGA-73-4677 TCGA-91-6828 TCGA-91-6829 TCGA-91-6831 
        1.32         4.01         1.25         1.22        41.33         1.28 
TCGA-91-6835 TCGA-91-6836 
        1.15         0.36 

  LIN28B MUTATED LIN28B WILD-TYPE 
            9.96             0.07 
  LIN28B MUTATED LIN28B WILD-TYPE 
           36.49            85.32 
  LIN28B MUTATED LIN28B WILD-TYPE 
           30.02            13.51 
[1] "10.0 - 36.5 (30.0)" "0.1 - 85.3 (13.5)" 
      TCGA-05-4249       TCGA-05-4250       TCGA-05-4382       TCGA-05-4384 
"LIN28B WILD-TYPE" "LIN28B WILD-TYPE" "LIN28B WILD-TYPE" "LIN28B WILD-TYPE" 
      TCGA-05-4390       TCGA-05-4396       TCGA-05-4397       TCGA-05-4398 
"LIN28B WILD-TYPE"   "LIN28B MUTATED" "LIN28B WILD-TYPE" "LIN28B WILD-TYPE" 
      TCGA-05-4402       TCGA-05-4405       TCGA-05-4415       TCGA-05-4417 
"LIN28B WILD-TYPE" "LIN28B WILD-TYPE" "LIN28B WILD-TYPE" "LIN28B WILD-TYPE" 
      TCGA-05-4418       TCGA-05-4420       TCGA-05-4424       TCGA-05-4426 
"LIN28B WILD-TYPE" "LIN28B WILD-TYPE"   "LIN28B MUTATED" "LIN28B WILD-TYPE" 
      TCGA-05-4427       TCGA-05-4430       TCGA-05-4432       TCGA-05-4433 
"LIN28B WILD-TYPE" "LIN28B WILD-TYPE" "LIN28B WILD-TYPE" "LIN28B WILD-TYPE" 
      TCGA-05-4434       TCGA-05-5420       TCGA-05-5423       TCGA-05-5425 
"LIN28B WILD-TYPE" "LIN28B WILD-TYPE" "LIN28B WILD-TYPE" "LIN28B WILD-TYPE" 
      TCGA-05-5429       TCGA-05-5715       TCGA-35-3615       TCGA-35-4122 
"LIN28B WILD-TYPE" "LIN28B WILD-TYPE" "LIN28B WILD-TYPE" "LIN28B WILD-TYPE" 
      TCGA-35-4123       TCGA-35-5375       TCGA-38-4625       TCGA-38-4626 
"LIN28B WILD-TYPE" "LIN28B WILD-TYPE" "LIN28B WILD-TYPE" "LIN28B WILD-TYPE" 
      TCGA-38-4627       TCGA-38-4628       TCGA-38-4629       TCGA-38-4630 
"LIN28B WILD-TYPE" "LIN28B WILD-TYPE" "LIN28B WILD-TYPE" "LIN28B WILD-TYPE" 
      TCGA-38-4631       TCGA-38-4632       TCGA-38-6178       TCGA-44-2655 
"LIN28B WILD-TYPE" "LIN28B WILD-TYPE" "LIN28B WILD-TYPE" "LIN28B WILD-TYPE" 
      TCGA-44-2656       TCGA-44-2657       TCGA-44-2659       TCGA-44-2661 
"LIN28B WILD-TYPE" "LIN28B WILD-TYPE" "LIN28B WILD-TYPE" "LIN28B WILD-TYPE" 
      TCGA-44-2662       TCGA-44-2665       TCGA-44-2666       TCGA-44-2668 
"LIN28B WILD-TYPE" "LIN28B WILD-TYPE" "LIN28B WILD-TYPE" "LIN28B WILD-TYPE" 
      TCGA-44-3396       TCGA-44-3398       TCGA-44-3918       TCGA-44-3919 
"LIN28B WILD-TYPE" "LIN28B WILD-TYPE" "LIN28B WILD-TYPE" "LIN28B WILD-TYPE" 
      TCGA-44-4112       TCGA-44-5643       TCGA-44-5645       TCGA-44-6144 
"LIN28B WILD-TYPE" "LIN28B WILD-TYPE" "LIN28B WILD-TYPE" "LIN28B WILD-TYPE" 
      TCGA-44-6145       TCGA-44-6146       TCGA-44-6147       TCGA-44-6148 
"LIN28B WILD-TYPE" "LIN28B WILD-TYPE" "LIN28B WILD-TYPE" "LIN28B WILD-TYPE" 
      TCGA-44-6774       TCGA-44-6775       TCGA-44-6776       TCGA-44-6777 
"LIN28B WILD-TYPE" "LIN28B WILD-TYPE" "LIN28B WILD-TYPE" "LIN28B WILD-TYPE" 
      TCGA-44-6778       TCGA-44-6779       TCGA-49-4486       TCGA-49-4487 
  "LIN28B MUTATED" "LIN28B WILD-TYPE" "LIN28B WILD-TYPE" "LIN28B WILD-TYPE" 
      TCGA-49-4488       TCGA-49-4490       TCGA-49-4494       TCGA-49-4501 
"LIN28B WILD-TYPE" "LIN28B WILD-TYPE" "LIN28B WILD-TYPE" "LIN28B WILD-TYPE" 
      TCGA-49-4505       TCGA-49-4506       TCGA-49-4507       TCGA-49-4510 
"LIN28B WILD-TYPE" "LIN28B WILD-TYPE" "LIN28B WILD-TYPE" "LIN28B WILD-TYPE" 
      TCGA-49-4512       TCGA-49-4514       TCGA-49-6742       TCGA-49-6743 
"LIN28B WILD-TYPE" "LIN28B WILD-TYPE" "LIN28B WILD-TYPE" "LIN28B WILD-TYPE" 
      TCGA-49-6744       TCGA-49-6745       TCGA-50-5044       TCGA-50-5045 
"LIN28B WILD-TYPE" "LIN28B WILD-TYPE" "LIN28B WILD-TYPE" "LIN28B WILD-TYPE" 
      TCGA-50-5049       TCGA-50-5051       TCGA-50-5055       TCGA-50-5066 
"LIN28B WILD-TYPE" "LIN28B WILD-TYPE" "LIN28B WILD-TYPE" "LIN28B WILD-TYPE" 
      TCGA-50-5068       TCGA-50-5072       TCGA-50-5930       TCGA-50-5931 
"LIN28B WILD-TYPE" "LIN28B WILD-TYPE" "LIN28B WILD-TYPE" "LIN28B WILD-TYPE" 
      TCGA-50-5932       TCGA-50-5933       TCGA-50-5935       TCGA-50-5936 
"LIN28B WILD-TYPE" "LIN28B WILD-TYPE" "LIN28B WILD-TYPE" "LIN28B WILD-TYPE" 
      TCGA-50-5939       TCGA-50-5941       TCGA-50-5942       TCGA-50-5944 
"LIN28B WILD-TYPE" "LIN28B WILD-TYPE" "LIN28B WILD-TYPE" "LIN28B WILD-TYPE" 
      TCGA-50-5946       TCGA-50-6590       TCGA-50-6591       TCGA-50-6592 
"LIN28B WILD-TYPE" "LIN28B WILD-TYPE" "LIN28B WILD-TYPE" "LIN28B WILD-TYPE" 
      TCGA-50-6593       TCGA-50-6594       TCGA-50-6595       TCGA-50-6597 
"LIN28B WILD-TYPE" "LIN28B WILD-TYPE" "LIN28B WILD-TYPE" "LIN28B WILD-TYPE" 
      TCGA-55-1592       TCGA-55-1594       TCGA-55-1595       TCGA-55-1596 
"LIN28B WILD-TYPE" "LIN28B WILD-TYPE" "LIN28B WILD-TYPE" "LIN28B WILD-TYPE" 
      TCGA-55-5899       TCGA-55-6543       TCGA-55-6642       TCGA-55-6712 
"LIN28B WILD-TYPE" "LIN28B WILD-TYPE" "LIN28B WILD-TYPE" "LIN28B WILD-TYPE" 
      TCGA-64-1676       TCGA-64-1677       TCGA-64-1678       TCGA-64-1680 
"LIN28B WILD-TYPE" "LIN28B WILD-TYPE" "LIN28B WILD-TYPE" "LIN28B WILD-TYPE" 
      TCGA-64-5774       TCGA-64-5775       TCGA-64-5778       TCGA-64-5779 
"LIN28B WILD-TYPE" "LIN28B WILD-TYPE" "LIN28B WILD-TYPE" "LIN28B WILD-TYPE" 
      TCGA-64-5781       TCGA-64-5815       TCGA-67-3770       TCGA-67-3771 
"LIN28B WILD-TYPE" "LIN28B WILD-TYPE" "LIN28B WILD-TYPE" "LIN28B WILD-TYPE" 
      TCGA-67-3772       TCGA-67-3773       TCGA-67-3774       TCGA-67-6215 
"LIN28B WILD-TYPE" "LIN28B WILD-TYPE" "LIN28B WILD-TYPE" "LIN28B WILD-TYPE" 
      TCGA-67-6216       TCGA-67-6217       TCGA-71-6725       TCGA-73-4658 
"LIN28B WILD-TYPE" "LIN28B WILD-TYPE" "LIN28B WILD-TYPE" "LIN28B WILD-TYPE" 
      TCGA-73-4659       TCGA-73-4662       TCGA-73-4666       TCGA-73-4668 
"LIN28B WILD-TYPE" "LIN28B WILD-TYPE" "LIN28B WILD-TYPE" "LIN28B WILD-TYPE" 
      TCGA-73-4670       TCGA-73-4675       TCGA-73-4676       TCGA-73-4677 
"LIN28B WILD-TYPE" "LIN28B WILD-TYPE" "LIN28B WILD-TYPE" "LIN28B WILD-TYPE" 
      TCGA-91-6828       TCGA-91-6829       TCGA-91-6831       TCGA-91-6835 
"LIN28B WILD-TYPE" "LIN28B WILD-TYPE" "LIN28B WILD-TYPE" "LIN28B WILD-TYPE" 
      TCGA-91-6836 
"LIN28B WILD-TYPE" 
      TCGA-05-4249       TCGA-05-4250       TCGA-05-4382       TCGA-05-4384 
"LIN28B WILD-TYPE" "LIN28B WILD-TYPE" "LIN28B WILD-TYPE" "LIN28B WILD-TYPE" 
      TCGA-05-4390       TCGA-05-4396       TCGA-05-4397       TCGA-05-4398 
"LIN28B WILD-TYPE"   "LIN28B MUTATED" "LIN28B WILD-TYPE" "LIN28B WILD-TYPE" 
      TCGA-05-4402       TCGA-05-4405       TCGA-05-4415       TCGA-05-4417 
"LIN28B WILD-TYPE" "LIN28B WILD-TYPE" "LIN28B WILD-TYPE" "LIN28B WILD-TYPE" 
      TCGA-05-4418       TCGA-05-4420       TCGA-05-4424       TCGA-05-4426 
"LIN28B WILD-TYPE" "LIN28B WILD-TYPE"   "LIN28B MUTATED" "LIN28B WILD-TYPE" 
      TCGA-05-4427       TCGA-05-4430       TCGA-05-4432       TCGA-05-4433 
"LIN28B WILD-TYPE" "LIN28B WILD-TYPE" "LIN28B WILD-TYPE" "LIN28B WILD-TYPE" 
      TCGA-05-4434       TCGA-05-5420       TCGA-05-5423       TCGA-05-5425 
"LIN28B WILD-TYPE" "LIN28B WILD-TYPE" "LIN28B WILD-TYPE" "LIN28B WILD-TYPE" 
      TCGA-05-5429       TCGA-05-5715       TCGA-35-3615       TCGA-35-4122 
"LIN28B WILD-TYPE" "LIN28B WILD-TYPE" "LIN28B WILD-TYPE" "LIN28B WILD-TYPE" 
      TCGA-35-4123       TCGA-35-5375       TCGA-38-4625       TCGA-38-4626 
"LIN28B WILD-TYPE" "LIN28B WILD-TYPE" "LIN28B WILD-TYPE" "LIN28B WILD-TYPE" 
      TCGA-38-4627       TCGA-38-4628       TCGA-38-4629       TCGA-38-4630 
"LIN28B WILD-TYPE" "LIN28B WILD-TYPE" "LIN28B WILD-TYPE" "LIN28B WILD-TYPE" 
      TCGA-38-4631       TCGA-38-4632       TCGA-38-6178       TCGA-44-2655 
"LIN28B WILD-TYPE" "LIN28B WILD-TYPE" "LIN28B WILD-TYPE" "LIN28B WILD-TYPE" 
      TCGA-44-2656       TCGA-44-2657       TCGA-44-2659       TCGA-44-2661 
"LIN28B WILD-TYPE" "LIN28B WILD-TYPE" "LIN28B WILD-TYPE" "LIN28B WILD-TYPE" 
      TCGA-44-2662       TCGA-44-2665       TCGA-44-2666       TCGA-44-2668 
"LIN28B WILD-TYPE" "LIN28B WILD-TYPE" "LIN28B WILD-TYPE" "LIN28B WILD-TYPE" 
      TCGA-44-3396       TCGA-44-3398       TCGA-44-3918       TCGA-44-3919 
"LIN28B WILD-TYPE" "LIN28B WILD-TYPE" "LIN28B WILD-TYPE" "LIN28B WILD-TYPE" 
      TCGA-44-4112       TCGA-44-5643       TCGA-44-5645       TCGA-44-6144 
"LIN28B WILD-TYPE" "LIN28B WILD-TYPE" "LIN28B WILD-TYPE" "LIN28B WILD-TYPE" 
      TCGA-44-6145       TCGA-44-6146       TCGA-44-6147       TCGA-44-6148 
"LIN28B WILD-TYPE" "LIN28B WILD-TYPE" "LIN28B WILD-TYPE" "LIN28B WILD-TYPE" 
      TCGA-44-6774       TCGA-44-6775       TCGA-44-6776       TCGA-44-6777 
"LIN28B WILD-TYPE" "LIN28B WILD-TYPE" "LIN28B WILD-TYPE" "LIN28B WILD-TYPE" 
      TCGA-44-6778       TCGA-44-6779       TCGA-49-4486       TCGA-49-4487 
  "LIN28B MUTATED" "LIN28B WILD-TYPE" "LIN28B WILD-TYPE" "LIN28B WILD-TYPE" 
      TCGA-49-4488       TCGA-49-4490       TCGA-49-4494       TCGA-49-4501 
"LIN28B WILD-TYPE" "LIN28B WILD-TYPE" "LIN28B WILD-TYPE" "LIN28B WILD-TYPE" 
      TCGA-49-4505       TCGA-49-4506       TCGA-49-4507       TCGA-49-4510 
"LIN28B WILD-TYPE" "LIN28B WILD-TYPE" "LIN28B WILD-TYPE" "LIN28B WILD-TYPE" 
      TCGA-49-4512       TCGA-49-4514       TCGA-49-6742       TCGA-49-6743 
"LIN28B WILD-TYPE" "LIN28B WILD-TYPE" "LIN28B WILD-TYPE" "LIN28B WILD-TYPE" 
      TCGA-49-6744       TCGA-49-6745       TCGA-50-5044       TCGA-50-5045 
"LIN28B WILD-TYPE" "LIN28B WILD-TYPE" "LIN28B WILD-TYPE" "LIN28B WILD-TYPE" 
      TCGA-50-5049       TCGA-50-5051       TCGA-50-5055       TCGA-50-5066 
"LIN28B WILD-TYPE" "LIN28B WILD-TYPE" "LIN28B WILD-TYPE" "LIN28B WILD-TYPE" 
      TCGA-50-5068       TCGA-50-5072       TCGA-50-5930       TCGA-50-5931 
"LIN28B WILD-TYPE" "LIN28B WILD-TYPE" "LIN28B WILD-TYPE" "LIN28B WILD-TYPE" 
      TCGA-50-5932       TCGA-50-5933       TCGA-50-5935       TCGA-50-5936 
"LIN28B WILD-TYPE" "LIN28B WILD-TYPE" "LIN28B WILD-TYPE" "LIN28B WILD-TYPE" 
      TCGA-50-5939       TCGA-50-5941       TCGA-50-5942       TCGA-50-5944 
"LIN28B WILD-TYPE" "LIN28B WILD-TYPE" "LIN28B WILD-TYPE" "LIN28B WILD-TYPE" 
      TCGA-50-5946       TCGA-50-6590       TCGA-50-6591       TCGA-50-6592 
"LIN28B WILD-TYPE" "LIN28B WILD-TYPE" "LIN28B WILD-TYPE" "LIN28B WILD-TYPE" 
      TCGA-50-6593       TCGA-50-6594       TCGA-50-6595       TCGA-50-6597 
"LIN28B WILD-TYPE" "LIN28B WILD-TYPE" "LIN28B WILD-TYPE" "LIN28B WILD-TYPE" 
      TCGA-55-1592       TCGA-55-1594       TCGA-55-1595       TCGA-55-1596 
"LIN28B WILD-TYPE" "LIN28B WILD-TYPE" "LIN28B WILD-TYPE" "LIN28B WILD-TYPE" 
      TCGA-55-5899       TCGA-55-6543       TCGA-55-6642       TCGA-55-6712 
"LIN28B WILD-TYPE" "LIN28B WILD-TYPE" "LIN28B WILD-TYPE" "LIN28B WILD-TYPE" 
      TCGA-64-1676       TCGA-64-1677       TCGA-64-1678       TCGA-64-1680 
"LIN28B WILD-TYPE" "LIN28B WILD-TYPE" "LIN28B WILD-TYPE" "LIN28B WILD-TYPE" 
      TCGA-64-5774       TCGA-64-5775       TCGA-64-5778       TCGA-64-5779 
"LIN28B WILD-TYPE" "LIN28B WILD-TYPE" "LIN28B WILD-TYPE" "LIN28B WILD-TYPE" 
      TCGA-64-5781       TCGA-64-5815       TCGA-67-3770       TCGA-67-3771 
"LIN28B WILD-TYPE" "LIN28B WILD-TYPE" "LIN28B WILD-TYPE" "LIN28B WILD-TYPE" 
      TCGA-67-3772       TCGA-67-3773       TCGA-67-3774       TCGA-67-6215 
"LIN28B WILD-TYPE" "LIN28B WILD-TYPE" "LIN28B WILD-TYPE" "LIN28B WILD-TYPE" 
      TCGA-67-6216       TCGA-67-6217       TCGA-71-6725       TCGA-73-4658 
"LIN28B WILD-TYPE" "LIN28B WILD-TYPE" "LIN28B WILD-TYPE" "LIN28B WILD-TYPE" 
      TCGA-73-4659       TCGA-73-4662       TCGA-73-4666       TCGA-73-4668 
"LIN28B WILD-TYPE" "LIN28B WILD-TYPE" "LIN28B WILD-TYPE" "LIN28B WILD-TYPE" 
      TCGA-73-4670       TCGA-73-4675       TCGA-73-4676       TCGA-73-4677 
"LIN28B WILD-TYPE" "LIN28B WILD-TYPE" "LIN28B WILD-TYPE" "LIN28B WILD-TYPE" 
      TCGA-91-6828       TCGA-91-6829       TCGA-91-6831       TCGA-91-6835 
"LIN28B WILD-TYPE" "LIN28B WILD-TYPE" "LIN28B WILD-TYPE" "LIN28B WILD-TYPE" 
      TCGA-91-6836 
"LIN28B WILD-TYPE" 
      TCGA-05-4249       TCGA-05-4250       TCGA-05-4382       TCGA-05-4384 
"LIN28B WILD-TYPE" "LIN28B WILD-TYPE" "LIN28B WILD-TYPE" "LIN28B WILD-TYPE" 
      TCGA-05-4390       TCGA-05-4396       TCGA-05-4397       TCGA-05-4398 
"LIN28B WILD-TYPE"   "LIN28B MUTATED" "LIN28B WILD-TYPE" "LIN28B WILD-TYPE" 
      TCGA-05-4402       TCGA-05-4405       TCGA-05-4415       TCGA-05-4417 
"LIN28B WILD-TYPE" "LIN28B WILD-TYPE" "LIN28B WILD-TYPE" "LIN28B WILD-TYPE" 
      TCGA-05-4418       TCGA-05-4420       TCGA-05-4424       TCGA-05-4426 
"LIN28B WILD-TYPE" "LIN28B WILD-TYPE"   "LIN28B MUTATED" "LIN28B WILD-TYPE" 
      TCGA-05-4427       TCGA-05-4430       TCGA-05-4432       TCGA-05-4433 
"LIN28B WILD-TYPE" "LIN28B WILD-TYPE" "LIN28B WILD-TYPE" "LIN28B WILD-TYPE" 
      TCGA-05-4434       TCGA-05-5420       TCGA-05-5423       TCGA-05-5425 
"LIN28B WILD-TYPE" "LIN28B WILD-TYPE" "LIN28B WILD-TYPE" "LIN28B WILD-TYPE" 
      TCGA-05-5429       TCGA-05-5715       TCGA-35-3615       TCGA-35-4122 
"LIN28B WILD-TYPE" "LIN28B WILD-TYPE" "LIN28B WILD-TYPE" "LIN28B WILD-TYPE" 
      TCGA-35-4123       TCGA-35-5375       TCGA-38-4625       TCGA-38-4626 
"LIN28B WILD-TYPE" "LIN28B WILD-TYPE" "LIN28B WILD-TYPE" "LIN28B WILD-TYPE" 
      TCGA-38-4627       TCGA-38-4628       TCGA-38-4629       TCGA-38-4630 
"LIN28B WILD-TYPE" "LIN28B WILD-TYPE" "LIN28B WILD-TYPE" "LIN28B WILD-TYPE" 
      TCGA-38-4631       TCGA-38-4632       TCGA-38-6178       TCGA-44-2655 
"LIN28B WILD-TYPE" "LIN28B WILD-TYPE" "LIN28B WILD-TYPE" "LIN28B WILD-TYPE" 
      TCGA-44-2656       TCGA-44-2657       TCGA-44-2659       TCGA-44-2661 
"LIN28B WILD-TYPE" "LIN28B WILD-TYPE" "LIN28B WILD-TYPE" "LIN28B WILD-TYPE" 
      TCGA-44-2662       TCGA-44-2665       TCGA-44-2666       TCGA-44-2668 
"LIN28B WILD-TYPE" "LIN28B WILD-TYPE" "LIN28B WILD-TYPE" "LIN28B WILD-TYPE" 
      TCGA-44-3396       TCGA-44-3398       TCGA-44-3918       TCGA-44-3919 
"LIN28B WILD-TYPE" "LIN28B WILD-TYPE" "LIN28B WILD-TYPE" "LIN28B WILD-TYPE" 
      TCGA-44-4112       TCGA-44-5643       TCGA-44-5645       TCGA-44-6144 
"LIN28B WILD-TYPE" "LIN28B WILD-TYPE" "LIN28B WILD-TYPE" "LIN28B WILD-TYPE" 
      TCGA-44-6145       TCGA-44-6146       TCGA-44-6147       TCGA-44-6148 
"LIN28B WILD-TYPE" "LIN28B WILD-TYPE" "LIN28B WILD-TYPE" "LIN28B WILD-TYPE" 
      TCGA-44-6774       TCGA-44-6775       TCGA-44-6776       TCGA-44-6777 
"LIN28B WILD-TYPE" "LIN28B WILD-TYPE" "LIN28B WILD-TYPE" "LIN28B WILD-TYPE" 
      TCGA-44-6778       TCGA-44-6779       TCGA-49-4486       TCGA-49-4487 
  "LIN28B MUTATED" "LIN28B WILD-TYPE" "LIN28B WILD-TYPE" "LIN28B WILD-TYPE" 
      TCGA-49-4488       TCGA-49-4490       TCGA-49-4494       TCGA-49-4501 
"LIN28B WILD-TYPE" "LIN28B WILD-TYPE" "LIN28B WILD-TYPE" "LIN28B WILD-TYPE" 
      TCGA-49-4505       TCGA-49-4506       TCGA-49-4507       TCGA-49-4510 
"LIN28B WILD-TYPE" "LIN28B WILD-TYPE" "LIN28B WILD-TYPE" "LIN28B WILD-TYPE" 
      TCGA-49-4512       TCGA-49-4514       TCGA-49-6742       TCGA-49-6743 
"LIN28B WILD-TYPE" "LIN28B WILD-TYPE" "LIN28B WILD-TYPE" "LIN28B WILD-TYPE" 
      TCGA-49-6744       TCGA-49-6745       TCGA-50-5044       TCGA-50-5045 
"LIN28B WILD-TYPE" "LIN28B WILD-TYPE" "LIN28B WILD-TYPE" "LIN28B WILD-TYPE" 
      TCGA-50-5049       TCGA-50-5051       TCGA-50-5055       TCGA-50-5066 
"LIN28B WILD-TYPE" "LIN28B WILD-TYPE" "LIN28B WILD-TYPE" "LIN28B WILD-TYPE" 
      TCGA-50-5068       TCGA-50-5072       TCGA-50-5930       TCGA-50-5931 
"LIN28B WILD-TYPE" "LIN28B WILD-TYPE" "LIN28B WILD-TYPE" "LIN28B WILD-TYPE" 
      TCGA-50-5932       TCGA-50-5933       TCGA-50-5935       TCGA-50-5936 
"LIN28B WILD-TYPE" "LIN28B WILD-TYPE" "LIN28B WILD-TYPE" "LIN28B WILD-TYPE" 
      TCGA-50-5939       TCGA-50-5941       TCGA-50-5942       TCGA-50-5944 
"LIN28B WILD-TYPE" "LIN28B WILD-TYPE" "LIN28B WILD-TYPE" "LIN28B WILD-TYPE" 
      TCGA-50-5946       TCGA-50-6590       TCGA-50-6591       TCGA-50-6592 
"LIN28B WILD-TYPE" "LIN28B WILD-TYPE" "LIN28B WILD-TYPE" "LIN28B WILD-TYPE" 
      TCGA-50-6593       TCGA-50-6594       TCGA-50-6595       TCGA-50-6597 
"LIN28B WILD-TYPE" "LIN28B WILD-TYPE" "LIN28B WILD-TYPE" "LIN28B WILD-TYPE" 
      TCGA-55-1592       TCGA-55-1594       TCGA-55-1595       TCGA-55-1596 
"LIN28B WILD-TYPE" "LIN28B WILD-TYPE" "LIN28B WILD-TYPE" "LIN28B WILD-TYPE" 
      TCGA-55-5899       TCGA-55-6543       TCGA-55-6642       TCGA-55-6712 
"LIN28B WILD-TYPE" "LIN28B WILD-TYPE" "LIN28B WILD-TYPE" "LIN28B WILD-TYPE" 
      TCGA-64-1676       TCGA-64-1677       TCGA-64-1678       TCGA-64-1680 
"LIN28B WILD-TYPE" "LIN28B WILD-TYPE" "LIN28B WILD-TYPE" "LIN28B WILD-TYPE" 
      TCGA-64-5774       TCGA-64-5775       TCGA-64-5778       TCGA-64-5779 
"LIN28B WILD-TYPE" "LIN28B WILD-TYPE" "LIN28B WILD-TYPE" "LIN28B WILD-TYPE" 
      TCGA-64-5781       TCGA-64-5815       TCGA-67-3770       TCGA-67-3771 
"LIN28B WILD-TYPE" "LIN28B WILD-TYPE" "LIN28B WILD-TYPE" "LIN28B WILD-TYPE" 
      TCGA-67-3772       TCGA-67-3773       TCGA-67-3774       TCGA-67-6215 
"LIN28B WILD-TYPE" "LIN28B WILD-TYPE" "LIN28B WILD-TYPE" "LIN28B WILD-TYPE" 
      TCGA-67-6216       TCGA-67-6217       TCGA-71-6725       TCGA-73-4658 
"LIN28B WILD-TYPE" "LIN28B WILD-TYPE" "LIN28B WILD-TYPE" "LIN28B WILD-TYPE" 
      TCGA-73-4659       TCGA-73-4662       TCGA-73-4666       TCGA-73-4668 
"LIN28B WILD-TYPE" "LIN28B WILD-TYPE" "LIN28B WILD-TYPE" "LIN28B WILD-TYPE" 
      TCGA-73-4670       TCGA-73-4675       TCGA-73-4676       TCGA-73-4677 
"LIN28B WILD-TYPE" "LIN28B WILD-TYPE" "LIN28B WILD-TYPE" "LIN28B WILD-TYPE" 
      TCGA-91-6828       TCGA-91-6829       TCGA-91-6831       TCGA-91-6835 
"LIN28B WILD-TYPE" "LIN28B WILD-TYPE" "LIN28B WILD-TYPE" "LIN28B WILD-TYPE" 
      TCGA-91-6836 
"LIN28B WILD-TYPE" 
[1] "hr=" "1.3"
D230V2, continuous
D230V3, binary
[1] "tbl2"
                  cls
clus               [,1] [,2]
  LIN28B MUTATED      1    4
  LIN28B WILD-TYPE   92   75
        clus
vv       LIN28B MUTATED LIN28B WILD-TYPE
  FEMALE              1               92
  MALE                4               75
D230V4, continuous
D230V5, multiclass
D230V6, multiclass
    clus
vv   LIN28B MUTATED LIN28B WILD-TYPE
  T1              2               39
  T2              0              108
  T3              2               12
  T4              1                7
D230V7, multiclass
       clus
vv      LIN28B MUTATED LIN28B WILD-TYPE
  N0                 2               93
  N1                 2               35
  N2+N3              1               34
D230V8, multiclass
    clus
vv   LIN28B MUTATED LIN28B WILD-TYPE
  M0              4              133
  M1              0                9
  MX              1               21
D230V9, multiclass
     clus
vv    LIN28B MUTATED LIN28B WILD-TYPE
  I                1               87
  II               2               31
  III              2               37
  IV               0                9
D230V10, binary
[1] "tbl2"
                  cls
clus               [,1] [,2]
  LIN28B MUTATED      0    5
  LIN28B WILD-TYPE   16  151
     clus
vv    LIN28B MUTATED LIN28B WILD-TYPE
  NO               0               16
  YES              5              151
D230V11, continuous
D230V12, continuous
D230V13, multiclass
                                             clus
vv                                            LIN28B MUTATED LIN28B WILD-TYPE
  CURRENT REFORMED SMOKER FOR < OR = 15 YEARS              3               59
  CURRENT REFORMED SMOKER FOR > 15 YEARS                   2               44
  CURRENT SMOKER                                           0               28
  LIFELONG NON-SMOKER                                      0               24
D230V14, continuous

Clustering(231) Variable = SPRR2E MUTATION ANALYSIS
D231V1, survival
                  sevent
clus2               0  1
  SPRR2E MUTATED    4  0
  SPRR2E WILD-TYPE 95 50
  SPRR2E MUTATED SPRR2E WILD-TYPE 
               4              145 
  SPRR2E MUTATED SPRR2E WILD-TYPE 
               0               50 
$`SPRR2E MUTATED`
TCGA-05-4427 TCGA-35-4122 TCGA-44-2656 TCGA-49-6743 
       26.01         7.36        19.10        12.13 

$`SPRR2E WILD-TYPE`
TCGA-05-4249 TCGA-05-4250 TCGA-05-4382 TCGA-05-4384 TCGA-05-4390 TCGA-05-4396 
       38.07         3.98        19.92        14.01        37.02         9.96 
TCGA-05-4397 TCGA-05-4398 TCGA-05-4402 TCGA-05-4405 TCGA-05-4415 TCGA-05-4417 
       24.03        47.05         8.02        20.05         2.96        14.93 
TCGA-05-4418 TCGA-05-4420 TCGA-05-4424 TCGA-05-4426 TCGA-05-4430 TCGA-05-4432 
        8.98        29.95        30.02        26.01        25.02        25.02 
TCGA-05-4433 TCGA-05-4434 TCGA-05-5420 TCGA-05-5423 TCGA-05-5425 TCGA-05-5429 
       24.00        15.02         1.02         4.96         2.96         0.99 
TCGA-05-5715 TCGA-35-3615 TCGA-35-4123 TCGA-35-5375 TCGA-38-4625 TCGA-38-4626 
        2.04         0.46         5.95         8.68        47.61        85.32 
TCGA-38-4627 TCGA-38-4628 TCGA-38-4629 TCGA-38-4630 TCGA-38-4631 TCGA-38-4632 
       37.71        49.02        28.37        35.28        11.64        44.61 
TCGA-38-6178 TCGA-44-2655 TCGA-44-2657 TCGA-44-2659 TCGA-44-2661 TCGA-44-2662 
        5.19        18.87        13.15        17.39         3.39        15.78 
TCGA-44-2665 TCGA-44-2666 TCGA-44-2668 TCGA-44-3396 TCGA-44-3398 TCGA-44-3918 
       13.15         3.19         8.09        10.22         8.32         6.44 
TCGA-44-3919 TCGA-44-4112 TCGA-44-5643 TCGA-44-5645 TCGA-44-6144 TCGA-44-6145 
        6.21         4.60         3.48         6.84         0.30         3.35 
TCGA-44-6146 TCGA-44-6147 TCGA-44-6148 TCGA-44-6774 TCGA-44-6775 TCGA-44-6776 
        9.93         7.76         3.12         5.42         2.70        63.72 
TCGA-44-6777 TCGA-44-6778 TCGA-44-6779 TCGA-49-4486 TCGA-49-4487 TCGA-49-4488 
       32.45        36.49        16.41        76.21        28.11        28.57 
TCGA-49-4490 TCGA-49-4494 TCGA-49-4501 TCGA-49-4505 TCGA-49-4506 TCGA-49-4507 
       12.66        35.54        46.72        14.07        32.84         8.81 
TCGA-49-4510 TCGA-49-4512 TCGA-49-4514 TCGA-49-6742 TCGA-49-6744 TCGA-49-6745 
       29.46        29.75        43.20        15.02        12.99         4.93 
TCGA-50-5044 TCGA-50-5045 TCGA-50-5049 TCGA-50-5051 TCGA-50-5055 TCGA-50-5066 
       20.48        71.47        48.82        14.96        25.81         9.76 
TCGA-50-5068 TCGA-50-5072 TCGA-50-5930 TCGA-50-5931 TCGA-50-5932 TCGA-50-5933 
       49.28         8.05         9.27         8.78        35.87        77.88 
TCGA-50-5935 TCGA-50-5936 TCGA-50-5939 TCGA-50-5941 TCGA-50-5942 TCGA-50-5944 
       21.47         8.45        15.12         9.37         4.44        12.26 
TCGA-50-5946 TCGA-50-6590 TCGA-50-6591 TCGA-50-6592 TCGA-50-6593 TCGA-50-6594 
       11.47        42.31         3.88        25.51        11.05        12.16 
TCGA-50-6595 TCGA-50-6597 TCGA-55-1592 TCGA-55-1594 TCGA-55-1595 TCGA-55-1596 
        6.21        33.37        23.05        38.73        48.62        45.17 
TCGA-55-5899 TCGA-55-6543 TCGA-55-6642 TCGA-55-6712 TCGA-64-1676 TCGA-64-1677 
        2.86         0.07        32.61         0.79        56.81        20.65 
TCGA-64-1678 TCGA-64-1680 TCGA-64-5774 TCGA-64-5775 TCGA-64-5778 TCGA-64-5779 
       39.09        37.02        83.84         0.10        30.44        16.67 
TCGA-64-5781 TCGA-64-5815 TCGA-67-3770 TCGA-67-3771 TCGA-67-3772 TCGA-67-3773 
       39.52         7.33         0.99         1.97         0.59         2.04 
TCGA-67-3774 TCGA-67-6215 TCGA-67-6216 TCGA-67-6217 TCGA-71-6725 TCGA-73-4658 
        0.59         0.89         0.69        13.87         2.01        52.57 
TCGA-73-4659 TCGA-73-4662 TCGA-73-4666 TCGA-73-4668 TCGA-73-4670 TCGA-73-4675 
       23.38        29.95        20.28        15.35         0.46         1.32 
TCGA-73-4676 TCGA-73-4677 TCGA-91-6828 TCGA-91-6829 TCGA-91-6831 TCGA-91-6835 
        4.01         1.25         1.22        41.33         1.28         1.15 
TCGA-91-6836 
        0.36 

  SPRR2E MUTATED SPRR2E WILD-TYPE 
            7.36             0.07 
  SPRR2E MUTATED SPRR2E WILD-TYPE 
           26.01            85.32 
  SPRR2E MUTATED SPRR2E WILD-TYPE 
          15.615           13.870 
[1] "7.4 - 26.0 (15.6)" "0.1 - 85.3 (13.9)"
      TCGA-05-4249       TCGA-05-4250       TCGA-05-4382       TCGA-05-4384 
"SPRR2E WILD-TYPE" "SPRR2E WILD-TYPE" "SPRR2E WILD-TYPE" "SPRR2E WILD-TYPE" 
      TCGA-05-4390       TCGA-05-4396       TCGA-05-4397       TCGA-05-4398 
"SPRR2E WILD-TYPE" "SPRR2E WILD-TYPE" "SPRR2E WILD-TYPE" "SPRR2E WILD-TYPE" 
      TCGA-05-4402       TCGA-05-4405       TCGA-05-4415       TCGA-05-4417 
"SPRR2E WILD-TYPE" "SPRR2E WILD-TYPE" "SPRR2E WILD-TYPE" "SPRR2E WILD-TYPE" 
      TCGA-05-4418       TCGA-05-4420       TCGA-05-4424       TCGA-05-4426 
"SPRR2E WILD-TYPE" "SPRR2E WILD-TYPE" "SPRR2E WILD-TYPE" "SPRR2E WILD-TYPE" 
      TCGA-05-4427       TCGA-05-4430       TCGA-05-4432       TCGA-05-4433 
  "SPRR2E MUTATED" "SPRR2E WILD-TYPE" "SPRR2E WILD-TYPE" "SPRR2E WILD-TYPE" 
      TCGA-05-4434       TCGA-05-5420       TCGA-05-5423       TCGA-05-5425 
"SPRR2E WILD-TYPE" "SPRR2E WILD-TYPE" "SPRR2E WILD-TYPE" "SPRR2E WILD-TYPE" 
      TCGA-05-5429       TCGA-05-5715       TCGA-35-3615       TCGA-35-4122 
"SPRR2E WILD-TYPE" "SPRR2E WILD-TYPE" "SPRR2E WILD-TYPE"   "SPRR2E MUTATED" 
      TCGA-35-4123       TCGA-35-5375       TCGA-38-4625       TCGA-38-4626 
"SPRR2E WILD-TYPE" "SPRR2E WILD-TYPE" "SPRR2E WILD-TYPE" "SPRR2E WILD-TYPE" 
      TCGA-38-4627       TCGA-38-4628       TCGA-38-4629       TCGA-38-4630 
"SPRR2E WILD-TYPE" "SPRR2E WILD-TYPE" "SPRR2E WILD-TYPE" "SPRR2E WILD-TYPE" 
      TCGA-38-4631       TCGA-38-4632       TCGA-38-6178       TCGA-44-2655 
"SPRR2E WILD-TYPE" "SPRR2E WILD-TYPE" "SPRR2E WILD-TYPE" "SPRR2E WILD-TYPE" 
      TCGA-44-2656       TCGA-44-2657       TCGA-44-2659       TCGA-44-2661 
  "SPRR2E MUTATED" "SPRR2E WILD-TYPE" "SPRR2E WILD-TYPE" "SPRR2E WILD-TYPE" 
      TCGA-44-2662       TCGA-44-2665       TCGA-44-2666       TCGA-44-2668 
"SPRR2E WILD-TYPE" "SPRR2E WILD-TYPE" "SPRR2E WILD-TYPE" "SPRR2E WILD-TYPE" 
      TCGA-44-3396       TCGA-44-3398       TCGA-44-3918       TCGA-44-3919 
"SPRR2E WILD-TYPE" "SPRR2E WILD-TYPE" "SPRR2E WILD-TYPE" "SPRR2E WILD-TYPE" 
      TCGA-44-4112       TCGA-44-5643       TCGA-44-5645       TCGA-44-6144 
"SPRR2E WILD-TYPE" "SPRR2E WILD-TYPE" "SPRR2E WILD-TYPE" "SPRR2E WILD-TYPE" 
      TCGA-44-6145       TCGA-44-6146       TCGA-44-6147       TCGA-44-6148 
"SPRR2E WILD-TYPE" "SPRR2E WILD-TYPE" "SPRR2E WILD-TYPE" "SPRR2E WILD-TYPE" 
      TCGA-44-6774       TCGA-44-6775       TCGA-44-6776       TCGA-44-6777 
"SPRR2E WILD-TYPE" "SPRR2E WILD-TYPE" "SPRR2E WILD-TYPE" "SPRR2E WILD-TYPE" 
      TCGA-44-6778       TCGA-44-6779       TCGA-49-4486       TCGA-49-4487 
"SPRR2E WILD-TYPE" "SPRR2E WILD-TYPE" "SPRR2E WILD-TYPE" "SPRR2E WILD-TYPE" 
      TCGA-49-4488       TCGA-49-4490       TCGA-49-4494       TCGA-49-4501 
"SPRR2E WILD-TYPE" "SPRR2E WILD-TYPE" "SPRR2E WILD-TYPE" "SPRR2E WILD-TYPE" 
      TCGA-49-4505       TCGA-49-4506       TCGA-49-4507       TCGA-49-4510 
"SPRR2E WILD-TYPE" "SPRR2E WILD-TYPE" "SPRR2E WILD-TYPE" "SPRR2E WILD-TYPE" 
      TCGA-49-4512       TCGA-49-4514       TCGA-49-6742       TCGA-49-6743 
"SPRR2E WILD-TYPE" "SPRR2E WILD-TYPE" "SPRR2E WILD-TYPE"   "SPRR2E MUTATED" 
      TCGA-49-6744       TCGA-49-6745       TCGA-50-5044       TCGA-50-5045 
"SPRR2E WILD-TYPE" "SPRR2E WILD-TYPE" "SPRR2E WILD-TYPE" "SPRR2E WILD-TYPE" 
      TCGA-50-5049       TCGA-50-5051       TCGA-50-5055       TCGA-50-5066 
"SPRR2E WILD-TYPE" "SPRR2E WILD-TYPE" "SPRR2E WILD-TYPE" "SPRR2E WILD-TYPE" 
      TCGA-50-5068       TCGA-50-5072       TCGA-50-5930       TCGA-50-5931 
"SPRR2E WILD-TYPE" "SPRR2E WILD-TYPE" "SPRR2E WILD-TYPE" "SPRR2E WILD-TYPE" 
      TCGA-50-5932       TCGA-50-5933       TCGA-50-5935       TCGA-50-5936 
"SPRR2E WILD-TYPE" "SPRR2E WILD-TYPE" "SPRR2E WILD-TYPE" "SPRR2E WILD-TYPE" 
      TCGA-50-5939       TCGA-50-5941       TCGA-50-5942       TCGA-50-5944 
"SPRR2E WILD-TYPE" "SPRR2E WILD-TYPE" "SPRR2E WILD-TYPE" "SPRR2E WILD-TYPE" 
      TCGA-50-5946       TCGA-50-6590       TCGA-50-6591       TCGA-50-6592 
"SPRR2E WILD-TYPE" "SPRR2E WILD-TYPE" "SPRR2E WILD-TYPE" "SPRR2E WILD-TYPE" 
      TCGA-50-6593       TCGA-50-6594       TCGA-50-6595       TCGA-50-6597 
"SPRR2E WILD-TYPE" "SPRR2E WILD-TYPE" "SPRR2E WILD-TYPE" "SPRR2E WILD-TYPE" 
      TCGA-55-1592       TCGA-55-1594       TCGA-55-1595       TCGA-55-1596 
"SPRR2E WILD-TYPE" "SPRR2E WILD-TYPE" "SPRR2E WILD-TYPE" "SPRR2E WILD-TYPE" 
      TCGA-55-5899       TCGA-55-6543       TCGA-55-6642       TCGA-55-6712 
"SPRR2E WILD-TYPE" "SPRR2E WILD-TYPE" "SPRR2E WILD-TYPE" "SPRR2E WILD-TYPE" 
      TCGA-64-1676       TCGA-64-1677       TCGA-64-1678       TCGA-64-1680 
"SPRR2E WILD-TYPE" "SPRR2E WILD-TYPE" "SPRR2E WILD-TYPE" "SPRR2E WILD-TYPE" 
      TCGA-64-5774       TCGA-64-5775       TCGA-64-5778       TCGA-64-5779 
"SPRR2E WILD-TYPE" "SPRR2E WILD-TYPE" "SPRR2E WILD-TYPE" "SPRR2E WILD-TYPE" 
      TCGA-64-5781       TCGA-64-5815       TCGA-67-3770       TCGA-67-3771 
"SPRR2E WILD-TYPE" "SPRR2E WILD-TYPE" "SPRR2E WILD-TYPE" "SPRR2E WILD-TYPE" 
      TCGA-67-3772       TCGA-67-3773       TCGA-67-3774       TCGA-67-6215 
"SPRR2E WILD-TYPE" "SPRR2E WILD-TYPE" "SPRR2E WILD-TYPE" "SPRR2E WILD-TYPE" 
      TCGA-67-6216       TCGA-67-6217       TCGA-71-6725       TCGA-73-4658 
"SPRR2E WILD-TYPE" "SPRR2E WILD-TYPE" "SPRR2E WILD-TYPE" "SPRR2E WILD-TYPE" 
      TCGA-73-4659       TCGA-73-4662       TCGA-73-4666       TCGA-73-4668 
"SPRR2E WILD-TYPE" "SPRR2E WILD-TYPE" "SPRR2E WILD-TYPE" "SPRR2E WILD-TYPE" 
      TCGA-73-4670       TCGA-73-4675       TCGA-73-4676       TCGA-73-4677 
"SPRR2E WILD-TYPE" "SPRR2E WILD-TYPE" "SPRR2E WILD-TYPE" "SPRR2E WILD-TYPE" 
      TCGA-91-6828       TCGA-91-6829       TCGA-91-6831       TCGA-91-6835 
"SPRR2E WILD-TYPE" "SPRR2E WILD-TYPE" "SPRR2E WILD-TYPE" "SPRR2E WILD-TYPE" 
      TCGA-91-6836 
"SPRR2E WILD-TYPE" 
      TCGA-05-4249       TCGA-05-4250       TCGA-05-4382       TCGA-05-4384 
"SPRR2E WILD-TYPE" "SPRR2E WILD-TYPE" "SPRR2E WILD-TYPE" "SPRR2E WILD-TYPE" 
      TCGA-05-4390       TCGA-05-4396       TCGA-05-4397       TCGA-05-4398 
"SPRR2E WILD-TYPE" "SPRR2E WILD-TYPE" "SPRR2E WILD-TYPE" "SPRR2E WILD-TYPE" 
      TCGA-05-4402       TCGA-05-4405       TCGA-05-4415       TCGA-05-4417 
"SPRR2E WILD-TYPE" "SPRR2E WILD-TYPE" "SPRR2E WILD-TYPE" "SPRR2E WILD-TYPE" 
      TCGA-05-4418       TCGA-05-4420       TCGA-05-4424       TCGA-05-4426 
"SPRR2E WILD-TYPE" "SPRR2E WILD-TYPE" "SPRR2E WILD-TYPE" "SPRR2E WILD-TYPE" 
      TCGA-05-4427       TCGA-05-4430       TCGA-05-4432       TCGA-05-4433 
  "SPRR2E MUTATED" "SPRR2E WILD-TYPE" "SPRR2E WILD-TYPE" "SPRR2E WILD-TYPE" 
      TCGA-05-4434       TCGA-05-5420       TCGA-05-5423       TCGA-05-5425 
"SPRR2E WILD-TYPE" "SPRR2E WILD-TYPE" "SPRR2E WILD-TYPE" "SPRR2E WILD-TYPE" 
      TCGA-05-5429       TCGA-05-5715       TCGA-35-3615       TCGA-35-4122 
"SPRR2E WILD-TYPE" "SPRR2E WILD-TYPE" "SPRR2E WILD-TYPE"   "SPRR2E MUTATED" 
      TCGA-35-4123       TCGA-35-5375       TCGA-38-4625       TCGA-38-4626 
"SPRR2E WILD-TYPE" "SPRR2E WILD-TYPE" "SPRR2E WILD-TYPE" "SPRR2E WILD-TYPE" 
      TCGA-38-4627       TCGA-38-4628       TCGA-38-4629       TCGA-38-4630 
"SPRR2E WILD-TYPE" "SPRR2E WILD-TYPE" "SPRR2E WILD-TYPE" "SPRR2E WILD-TYPE" 
      TCGA-38-4631       TCGA-38-4632       TCGA-38-6178       TCGA-44-2655 
"SPRR2E WILD-TYPE" "SPRR2E WILD-TYPE" "SPRR2E WILD-TYPE" "SPRR2E WILD-TYPE" 
      TCGA-44-2656       TCGA-44-2657       TCGA-44-2659       TCGA-44-2661 
  "SPRR2E MUTATED" "SPRR2E WILD-TYPE" "SPRR2E WILD-TYPE" "SPRR2E WILD-TYPE" 
      TCGA-44-2662       TCGA-44-2665       TCGA-44-2666       TCGA-44-2668 
"SPRR2E WILD-TYPE" "SPRR2E WILD-TYPE" "SPRR2E WILD-TYPE" "SPRR2E WILD-TYPE" 
      TCGA-44-3396       TCGA-44-3398       TCGA-44-3918       TCGA-44-3919 
"SPRR2E WILD-TYPE" "SPRR2E WILD-TYPE" "SPRR2E WILD-TYPE" "SPRR2E WILD-TYPE" 
      TCGA-44-4112       TCGA-44-5643       TCGA-44-5645       TCGA-44-6144 
"SPRR2E WILD-TYPE" "SPRR2E WILD-TYPE" "SPRR2E WILD-TYPE" "SPRR2E WILD-TYPE" 
      TCGA-44-6145       TCGA-44-6146       TCGA-44-6147       TCGA-44-6148 
"SPRR2E WILD-TYPE" "SPRR2E WILD-TYPE" "SPRR2E WILD-TYPE" "SPRR2E WILD-TYPE" 
      TCGA-44-6774       TCGA-44-6775       TCGA-44-6776       TCGA-44-6777 
"SPRR2E WILD-TYPE" "SPRR2E WILD-TYPE" "SPRR2E WILD-TYPE" "SPRR2E WILD-TYPE" 
      TCGA-44-6778       TCGA-44-6779       TCGA-49-4486       TCGA-49-4487 
"SPRR2E WILD-TYPE" "SPRR2E WILD-TYPE" "SPRR2E WILD-TYPE" "SPRR2E WILD-TYPE" 
      TCGA-49-4488       TCGA-49-4490       TCGA-49-4494       TCGA-49-4501 
"SPRR2E WILD-TYPE" "SPRR2E WILD-TYPE" "SPRR2E WILD-TYPE" "SPRR2E WILD-TYPE" 
      TCGA-49-4505       TCGA-49-4506       TCGA-49-4507       TCGA-49-4510 
"SPRR2E WILD-TYPE" "SPRR2E WILD-TYPE" "SPRR2E WILD-TYPE" "SPRR2E WILD-TYPE" 
      TCGA-49-4512       TCGA-49-4514       TCGA-49-6742       TCGA-49-6743 
"SPRR2E WILD-TYPE" "SPRR2E WILD-TYPE" "SPRR2E WILD-TYPE"   "SPRR2E MUTATED" 
      TCGA-49-6744       TCGA-49-6745       TCGA-50-5044       TCGA-50-5045 
"SPRR2E WILD-TYPE" "SPRR2E WILD-TYPE" "SPRR2E WILD-TYPE" "SPRR2E WILD-TYPE" 
      TCGA-50-5049       TCGA-50-5051       TCGA-50-5055       TCGA-50-5066 
"SPRR2E WILD-TYPE" "SPRR2E WILD-TYPE" "SPRR2E WILD-TYPE" "SPRR2E WILD-TYPE" 
      TCGA-50-5068       TCGA-50-5072       TCGA-50-5930       TCGA-50-5931 
"SPRR2E WILD-TYPE" "SPRR2E WILD-TYPE" "SPRR2E WILD-TYPE" "SPRR2E WILD-TYPE" 
      TCGA-50-5932       TCGA-50-5933       TCGA-50-5935       TCGA-50-5936 
"SPRR2E WILD-TYPE" "SPRR2E WILD-TYPE" "SPRR2E WILD-TYPE" "SPRR2E WILD-TYPE" 
      TCGA-50-5939       TCGA-50-5941       TCGA-50-5942       TCGA-50-5944 
"SPRR2E WILD-TYPE" "SPRR2E WILD-TYPE" "SPRR2E WILD-TYPE" "SPRR2E WILD-TYPE" 
      TCGA-50-5946       TCGA-50-6590       TCGA-50-6591       TCGA-50-6592 
"SPRR2E WILD-TYPE" "SPRR2E WILD-TYPE" "SPRR2E WILD-TYPE" "SPRR2E WILD-TYPE" 
      TCGA-50-6593       TCGA-50-6594       TCGA-50-6595       TCGA-50-6597 
"SPRR2E WILD-TYPE" "SPRR2E WILD-TYPE" "SPRR2E WILD-TYPE" "SPRR2E WILD-TYPE" 
      TCGA-55-1592       TCGA-55-1594       TCGA-55-1595       TCGA-55-1596 
"SPRR2E WILD-TYPE" "SPRR2E WILD-TYPE" "SPRR2E WILD-TYPE" "SPRR2E WILD-TYPE" 
      TCGA-55-5899       TCGA-55-6543       TCGA-55-6642       TCGA-55-6712 
"SPRR2E WILD-TYPE" "SPRR2E WILD-TYPE" "SPRR2E WILD-TYPE" "SPRR2E WILD-TYPE" 
      TCGA-64-1676       TCGA-64-1677       TCGA-64-1678       TCGA-64-1680 
"SPRR2E WILD-TYPE" "SPRR2E WILD-TYPE" "SPRR2E WILD-TYPE" "SPRR2E WILD-TYPE" 
      TCGA-64-5774       TCGA-64-5775       TCGA-64-5778       TCGA-64-5779 
"SPRR2E WILD-TYPE" "SPRR2E WILD-TYPE" "SPRR2E WILD-TYPE" "SPRR2E WILD-TYPE" 
      TCGA-64-5781       TCGA-64-5815       TCGA-67-3770       TCGA-67-3771 
"SPRR2E WILD-TYPE" "SPRR2E WILD-TYPE" "SPRR2E WILD-TYPE" "SPRR2E WILD-TYPE" 
      TCGA-67-3772       TCGA-67-3773       TCGA-67-3774       TCGA-67-6215 
"SPRR2E WILD-TYPE" "SPRR2E WILD-TYPE" "SPRR2E WILD-TYPE" "SPRR2E WILD-TYPE" 
      TCGA-67-6216       TCGA-67-6217       TCGA-71-6725       TCGA-73-4658 
"SPRR2E WILD-TYPE" "SPRR2E WILD-TYPE" "SPRR2E WILD-TYPE" "SPRR2E WILD-TYPE" 
      TCGA-73-4659       TCGA-73-4662       TCGA-73-4666       TCGA-73-4668 
"SPRR2E WILD-TYPE" "SPRR2E WILD-TYPE" "SPRR2E WILD-TYPE" "SPRR2E WILD-TYPE" 
      TCGA-73-4670       TCGA-73-4675       TCGA-73-4676       TCGA-73-4677 
"SPRR2E WILD-TYPE" "SPRR2E WILD-TYPE" "SPRR2E WILD-TYPE" "SPRR2E WILD-TYPE" 
      TCGA-91-6828       TCGA-91-6829       TCGA-91-6831       TCGA-91-6835 
"SPRR2E WILD-TYPE" "SPRR2E WILD-TYPE" "SPRR2E WILD-TYPE" "SPRR2E WILD-TYPE" 
      TCGA-91-6836 
"SPRR2E WILD-TYPE" 
      TCGA-05-4249       TCGA-05-4250       TCGA-05-4382       TCGA-05-4384 
"SPRR2E WILD-TYPE" "SPRR2E WILD-TYPE" "SPRR2E WILD-TYPE" "SPRR2E WILD-TYPE" 
      TCGA-05-4390       TCGA-05-4396       TCGA-05-4397       TCGA-05-4398 
"SPRR2E WILD-TYPE" "SPRR2E WILD-TYPE" "SPRR2E WILD-TYPE" "SPRR2E WILD-TYPE" 
      TCGA-05-4402       TCGA-05-4405       TCGA-05-4415       TCGA-05-4417 
"SPRR2E WILD-TYPE" "SPRR2E WILD-TYPE" "SPRR2E WILD-TYPE" "SPRR2E WILD-TYPE" 
      TCGA-05-4418       TCGA-05-4420       TCGA-05-4424       TCGA-05-4426 
"SPRR2E WILD-TYPE" "SPRR2E WILD-TYPE" "SPRR2E WILD-TYPE" "SPRR2E WILD-TYPE" 
      TCGA-05-4427       TCGA-05-4430       TCGA-05-4432       TCGA-05-4433 
  "SPRR2E MUTATED" "SPRR2E WILD-TYPE" "SPRR2E WILD-TYPE" "SPRR2E WILD-TYPE" 
      TCGA-05-4434       TCGA-05-5420       TCGA-05-5423       TCGA-05-5425 
"SPRR2E WILD-TYPE" "SPRR2E WILD-TYPE" "SPRR2E WILD-TYPE" "SPRR2E WILD-TYPE" 
      TCGA-05-5429       TCGA-05-5715       TCGA-35-3615       TCGA-35-4122 
"SPRR2E WILD-TYPE" "SPRR2E WILD-TYPE" "SPRR2E WILD-TYPE"   "SPRR2E MUTATED" 
      TCGA-35-4123       TCGA-35-5375       TCGA-38-4625       TCGA-38-4626 
"SPRR2E WILD-TYPE" "SPRR2E WILD-TYPE" "SPRR2E WILD-TYPE" "SPRR2E WILD-TYPE" 
      TCGA-38-4627       TCGA-38-4628       TCGA-38-4629       TCGA-38-4630 
"SPRR2E WILD-TYPE" "SPRR2E WILD-TYPE" "SPRR2E WILD-TYPE" "SPRR2E WILD-TYPE" 
      TCGA-38-4631       TCGA-38-4632       TCGA-38-6178       TCGA-44-2655 
"SPRR2E WILD-TYPE" "SPRR2E WILD-TYPE" "SPRR2E WILD-TYPE" "SPRR2E WILD-TYPE" 
      TCGA-44-2656       TCGA-44-2657       TCGA-44-2659       TCGA-44-2661 
  "SPRR2E MUTATED" "SPRR2E WILD-TYPE" "SPRR2E WILD-TYPE" "SPRR2E WILD-TYPE" 
      TCGA-44-2662       TCGA-44-2665       TCGA-44-2666       TCGA-44-2668 
"SPRR2E WILD-TYPE" "SPRR2E WILD-TYPE" "SPRR2E WILD-TYPE" "SPRR2E WILD-TYPE" 
      TCGA-44-3396       TCGA-44-3398       TCGA-44-3918       TCGA-44-3919 
"SPRR2E WILD-TYPE" "SPRR2E WILD-TYPE" "SPRR2E WILD-TYPE" "SPRR2E WILD-TYPE" 
      TCGA-44-4112       TCGA-44-5643       TCGA-44-5645       TCGA-44-6144 
"SPRR2E WILD-TYPE" "SPRR2E WILD-TYPE" "SPRR2E WILD-TYPE" "SPRR2E WILD-TYPE" 
      TCGA-44-6145       TCGA-44-6146       TCGA-44-6147       TCGA-44-6148 
"SPRR2E WILD-TYPE" "SPRR2E WILD-TYPE" "SPRR2E WILD-TYPE" "SPRR2E WILD-TYPE" 
      TCGA-44-6774       TCGA-44-6775       TCGA-44-6776       TCGA-44-6777 
"SPRR2E WILD-TYPE" "SPRR2E WILD-TYPE" "SPRR2E WILD-TYPE" "SPRR2E WILD-TYPE" 
      TCGA-44-6778       TCGA-44-6779       TCGA-49-4486       TCGA-49-4487 
"SPRR2E WILD-TYPE" "SPRR2E WILD-TYPE" "SPRR2E WILD-TYPE" "SPRR2E WILD-TYPE" 
      TCGA-49-4488       TCGA-49-4490       TCGA-49-4494       TCGA-49-4501 
"SPRR2E WILD-TYPE" "SPRR2E WILD-TYPE" "SPRR2E WILD-TYPE" "SPRR2E WILD-TYPE" 
      TCGA-49-4505       TCGA-49-4506       TCGA-49-4507       TCGA-49-4510 
"SPRR2E WILD-TYPE" "SPRR2E WILD-TYPE" "SPRR2E WILD-TYPE" "SPRR2E WILD-TYPE" 
      TCGA-49-4512       TCGA-49-4514       TCGA-49-6742       TCGA-49-6743 
"SPRR2E WILD-TYPE" "SPRR2E WILD-TYPE" "SPRR2E WILD-TYPE"   "SPRR2E MUTATED" 
      TCGA-49-6744       TCGA-49-6745       TCGA-50-5044       TCGA-50-5045 
"SPRR2E WILD-TYPE" "SPRR2E WILD-TYPE" "SPRR2E WILD-TYPE" "SPRR2E WILD-TYPE" 
      TCGA-50-5049       TCGA-50-5051       TCGA-50-5055       TCGA-50-5066 
"SPRR2E WILD-TYPE" "SPRR2E WILD-TYPE" "SPRR2E WILD-TYPE" "SPRR2E WILD-TYPE" 
      TCGA-50-5068       TCGA-50-5072       TCGA-50-5930       TCGA-50-5931 
"SPRR2E WILD-TYPE" "SPRR2E WILD-TYPE" "SPRR2E WILD-TYPE" "SPRR2E WILD-TYPE" 
      TCGA-50-5932       TCGA-50-5933       TCGA-50-5935       TCGA-50-5936 
"SPRR2E WILD-TYPE" "SPRR2E WILD-TYPE" "SPRR2E WILD-TYPE" "SPRR2E WILD-TYPE" 
      TCGA-50-5939       TCGA-50-5941       TCGA-50-5942       TCGA-50-5944 
"SPRR2E WILD-TYPE" "SPRR2E WILD-TYPE" "SPRR2E WILD-TYPE" "SPRR2E WILD-TYPE" 
      TCGA-50-5946       TCGA-50-6590       TCGA-50-6591       TCGA-50-6592 
"SPRR2E WILD-TYPE" "SPRR2E WILD-TYPE" "SPRR2E WILD-TYPE" "SPRR2E WILD-TYPE" 
      TCGA-50-6593       TCGA-50-6594       TCGA-50-6595       TCGA-50-6597 
"SPRR2E WILD-TYPE" "SPRR2E WILD-TYPE" "SPRR2E WILD-TYPE" "SPRR2E WILD-TYPE" 
      TCGA-55-1592       TCGA-55-1594       TCGA-55-1595       TCGA-55-1596 
"SPRR2E WILD-TYPE" "SPRR2E WILD-TYPE" "SPRR2E WILD-TYPE" "SPRR2E WILD-TYPE" 
      TCGA-55-5899       TCGA-55-6543       TCGA-55-6642       TCGA-55-6712 
"SPRR2E WILD-TYPE" "SPRR2E WILD-TYPE" "SPRR2E WILD-TYPE" "SPRR2E WILD-TYPE" 
      TCGA-64-1676       TCGA-64-1677       TCGA-64-1678       TCGA-64-1680 
"SPRR2E WILD-TYPE" "SPRR2E WILD-TYPE" "SPRR2E WILD-TYPE" "SPRR2E WILD-TYPE" 
      TCGA-64-5774       TCGA-64-5775       TCGA-64-5778       TCGA-64-5779 
"SPRR2E WILD-TYPE" "SPRR2E WILD-TYPE" "SPRR2E WILD-TYPE" "SPRR2E WILD-TYPE" 
      TCGA-64-5781       TCGA-64-5815       TCGA-67-3770       TCGA-67-3771 
"SPRR2E WILD-TYPE" "SPRR2E WILD-TYPE" "SPRR2E WILD-TYPE" "SPRR2E WILD-TYPE" 
      TCGA-67-3772       TCGA-67-3773       TCGA-67-3774       TCGA-67-6215 
"SPRR2E WILD-TYPE" "SPRR2E WILD-TYPE" "SPRR2E WILD-TYPE" "SPRR2E WILD-TYPE" 
      TCGA-67-6216       TCGA-67-6217       TCGA-71-6725       TCGA-73-4658 
"SPRR2E WILD-TYPE" "SPRR2E WILD-TYPE" "SPRR2E WILD-TYPE" "SPRR2E WILD-TYPE" 
      TCGA-73-4659       TCGA-73-4662       TCGA-73-4666       TCGA-73-4668 
"SPRR2E WILD-TYPE" "SPRR2E WILD-TYPE" "SPRR2E WILD-TYPE" "SPRR2E WILD-TYPE" 
      TCGA-73-4670       TCGA-73-4675       TCGA-73-4676       TCGA-73-4677 
"SPRR2E WILD-TYPE" "SPRR2E WILD-TYPE" "SPRR2E WILD-TYPE" "SPRR2E WILD-TYPE" 
      TCGA-91-6828       TCGA-91-6829       TCGA-91-6831       TCGA-91-6835 
"SPRR2E WILD-TYPE" "SPRR2E WILD-TYPE" "SPRR2E WILD-TYPE" "SPRR2E WILD-TYPE" 
      TCGA-91-6836 
"SPRR2E WILD-TYPE" 
[1] "hr="     "9300000"
D231V2, continuous
D231V3, binary
[1] "tbl2"
                  cls
clus               [,1] [,2]
  SPRR2E MUTATED      2    2
  SPRR2E WILD-TYPE   91   77
        clus
vv       SPRR2E MUTATED SPRR2E WILD-TYPE
  FEMALE              2               91
  MALE                2               77
D231V4, continuous
[1] "Remove cluster labels:" "SPRR2E MUTATED"        
clus
  SPRR2E MUTATED SPRR2E WILD-TYPE 
               1               11 
      TCGA-35-4123       TCGA-35-5375       TCGA-64-1677       TCGA-64-5778 
"SPRR2E WILD-TYPE" "SPRR2E WILD-TYPE" "SPRR2E WILD-TYPE" "SPRR2E WILD-TYPE" 
      TCGA-71-6725       TCGA-73-4659       TCGA-73-4662       TCGA-73-4666 
"SPRR2E WILD-TYPE" "SPRR2E WILD-TYPE" "SPRR2E WILD-TYPE" "SPRR2E WILD-TYPE" 
      TCGA-73-4668       TCGA-73-4676       TCGA-75-5122 
"SPRR2E WILD-TYPE" "SPRR2E WILD-TYPE" "SPRR2E WILD-TYPE" 
D231V5, multiclass
D231V6, multiclass
    clus
vv   SPRR2E MUTATED SPRR2E WILD-TYPE
  T1              2               39
  T2              2              106
  T3              0               14
  T4              0                8
D231V7, multiclass
       clus
vv      SPRR2E MUTATED SPRR2E WILD-TYPE
  N0                 2               93
  N1                 1               36
  N2+N3              1               34
D231V8, multiclass
    clus
vv   SPRR2E MUTATED SPRR2E WILD-TYPE
  M0              3              134
  M1              0                9
  MX              1               21
D231V9, multiclass
     clus
vv    SPRR2E MUTATED SPRR2E WILD-TYPE
  I                2               86
  II               1               32
  III              1               38
  IV               0                9
D231V10, binary
[1] "tbl2"
                  cls
clus               [,1] [,2]
  SPRR2E MUTATED      0    4
  SPRR2E WILD-TYPE   16  152
     clus
vv    SPRR2E MUTATED SPRR2E WILD-TYPE
  NO               0               16
  YES              4              152
D231V11, continuous
D231V12, continuous
D231V13, multiclass
                                             clus
vv                                            SPRR2E MUTATED SPRR2E WILD-TYPE
  CURRENT REFORMED SMOKER FOR < OR = 15 YEARS              4               58
  CURRENT REFORMED SMOKER FOR > 15 YEARS                   0               46
  CURRENT SMOKER                                           0               28
  LIFELONG NON-SMOKER                                      0               24
D231V14, continuous

Clustering(232) Variable = OR10AG1 MUTATION ANALYSIS
D232V1, survival
                   sevent
clus2                0  1
  OR10AG1 MUTATED    4  2
  OR10AG1 WILD-TYPE 95 48
  OR10AG1 MUTATED OR10AG1 WILD-TYPE 
                6               143 
  OR10AG1 MUTATED OR10AG1 WILD-TYPE 
                2                48 
$`OR10AG1 MUTATED`
TCGA-05-4384 TCGA-05-4397 TCGA-38-4625 TCGA-44-6145 TCGA-50-6590 TCGA-67-3771 
       14.01        24.03        47.61         3.35        42.31         1.97 

$`OR10AG1 WILD-TYPE`
TCGA-05-4249 TCGA-05-4250 TCGA-05-4382 TCGA-05-4390 TCGA-05-4396 TCGA-05-4398 
       38.07         3.98        19.92        37.02         9.96        47.05 
TCGA-05-4402 TCGA-05-4405 TCGA-05-4415 TCGA-05-4417 TCGA-05-4418 TCGA-05-4420 
        8.02        20.05         2.96        14.93         8.98        29.95 
TCGA-05-4424 TCGA-05-4426 TCGA-05-4427 TCGA-05-4430 TCGA-05-4432 TCGA-05-4433 
       30.02        26.01        26.01        25.02        25.02        24.00 
TCGA-05-4434 TCGA-05-5420 TCGA-05-5423 TCGA-05-5425 TCGA-05-5429 TCGA-05-5715 
       15.02         1.02         4.96         2.96         0.99         2.04 
TCGA-35-3615 TCGA-35-4122 TCGA-35-4123 TCGA-35-5375 TCGA-38-4626 TCGA-38-4627 
        0.46         7.36         5.95         8.68        85.32        37.71 
TCGA-38-4628 TCGA-38-4629 TCGA-38-4630 TCGA-38-4631 TCGA-38-4632 TCGA-38-6178 
       49.02        28.37        35.28        11.64        44.61         5.19 
TCGA-44-2655 TCGA-44-2656 TCGA-44-2657 TCGA-44-2659 TCGA-44-2661 TCGA-44-2662 
       18.87        19.10        13.15        17.39         3.39        15.78 
TCGA-44-2665 TCGA-44-2666 TCGA-44-2668 TCGA-44-3396 TCGA-44-3398 TCGA-44-3918 
       13.15         3.19         8.09        10.22         8.32         6.44 
TCGA-44-3919 TCGA-44-4112 TCGA-44-5643 TCGA-44-5645 TCGA-44-6144 TCGA-44-6146 
        6.21         4.60         3.48         6.84         0.30         9.93 
TCGA-44-6147 TCGA-44-6148 TCGA-44-6774 TCGA-44-6775 TCGA-44-6776 TCGA-44-6777 
        7.76         3.12         5.42         2.70        63.72        32.45 
TCGA-44-6778 TCGA-44-6779 TCGA-49-4486 TCGA-49-4487 TCGA-49-4488 TCGA-49-4490 
       36.49        16.41        76.21        28.11        28.57        12.66 
TCGA-49-4494 TCGA-49-4501 TCGA-49-4505 TCGA-49-4506 TCGA-49-4507 TCGA-49-4510 
       35.54        46.72        14.07        32.84         8.81        29.46 
TCGA-49-4512 TCGA-49-4514 TCGA-49-6742 TCGA-49-6743 TCGA-49-6744 TCGA-49-6745 
       29.75        43.20        15.02        12.13        12.99         4.93 
TCGA-50-5044 TCGA-50-5045 TCGA-50-5049 TCGA-50-5051 TCGA-50-5055 TCGA-50-5066 
       20.48        71.47        48.82        14.96        25.81         9.76 
TCGA-50-5068 TCGA-50-5072 TCGA-50-5930 TCGA-50-5931 TCGA-50-5932 TCGA-50-5933 
       49.28         8.05         9.27         8.78        35.87        77.88 
TCGA-50-5935 TCGA-50-5936 TCGA-50-5939 TCGA-50-5941 TCGA-50-5942 TCGA-50-5944 
       21.47         8.45        15.12         9.37         4.44        12.26 
TCGA-50-5946 TCGA-50-6591 TCGA-50-6592 TCGA-50-6593 TCGA-50-6594 TCGA-50-6595 
       11.47         3.88        25.51        11.05        12.16         6.21 
TCGA-50-6597 TCGA-55-1592 TCGA-55-1594 TCGA-55-1595 TCGA-55-1596 TCGA-55-5899 
       33.37        23.05        38.73        48.62        45.17         2.86 
TCGA-55-6543 TCGA-55-6642 TCGA-55-6712 TCGA-64-1676 TCGA-64-1677 TCGA-64-1678 
        0.07        32.61         0.79        56.81        20.65        39.09 
TCGA-64-1680 TCGA-64-5774 TCGA-64-5775 TCGA-64-5778 TCGA-64-5779 TCGA-64-5781 
       37.02        83.84         0.10        30.44        16.67        39.52 
TCGA-64-5815 TCGA-67-3770 TCGA-67-3772 TCGA-67-3773 TCGA-67-3774 TCGA-67-6215 
        7.33         0.99         0.59         2.04         0.59         0.89 
TCGA-67-6216 TCGA-67-6217 TCGA-71-6725 TCGA-73-4658 TCGA-73-4659 TCGA-73-4662 
        0.69        13.87         2.01        52.57        23.38        29.95 
TCGA-73-4666 TCGA-73-4668 TCGA-73-4670 TCGA-73-4675 TCGA-73-4676 TCGA-73-4677 
       20.28        15.35         0.46         1.32         4.01         1.25 
TCGA-91-6828 TCGA-91-6829 TCGA-91-6831 TCGA-91-6835 TCGA-91-6836 
        1.22        41.33         1.28         1.15         0.36 

  OR10AG1 MUTATED OR10AG1 WILD-TYPE 
             1.97              0.07 
  OR10AG1 MUTATED OR10AG1 WILD-TYPE 
            47.61             85.32 
  OR10AG1 MUTATED OR10AG1 WILD-TYPE 
            19.02             13.15 
[1] "2.0 - 47.6 (19.0)" "0.1 - 85.3 (13.2)"
       TCGA-05-4249        TCGA-05-4250        TCGA-05-4382        TCGA-05-4384 
"OR10AG1 WILD-TYPE" "OR10AG1 WILD-TYPE" "OR10AG1 WILD-TYPE"   "OR10AG1 MUTATED" 
       TCGA-05-4390        TCGA-05-4396        TCGA-05-4397        TCGA-05-4398 
"OR10AG1 WILD-TYPE" "OR10AG1 WILD-TYPE"   "OR10AG1 MUTATED" "OR10AG1 WILD-TYPE" 
       TCGA-05-4402        TCGA-05-4405        TCGA-05-4415        TCGA-05-4417 
"OR10AG1 WILD-TYPE" "OR10AG1 WILD-TYPE" "OR10AG1 WILD-TYPE" "OR10AG1 WILD-TYPE" 
       TCGA-05-4418        TCGA-05-4420        TCGA-05-4424        TCGA-05-4426 
"OR10AG1 WILD-TYPE" "OR10AG1 WILD-TYPE" "OR10AG1 WILD-TYPE" "OR10AG1 WILD-TYPE" 
       TCGA-05-4427        TCGA-05-4430        TCGA-05-4432        TCGA-05-4433 
"OR10AG1 WILD-TYPE" "OR10AG1 WILD-TYPE" "OR10AG1 WILD-TYPE" "OR10AG1 WILD-TYPE" 
       TCGA-05-4434        TCGA-05-5420        TCGA-05-5423        TCGA-05-5425 
"OR10AG1 WILD-TYPE" "OR10AG1 WILD-TYPE" "OR10AG1 WILD-TYPE" "OR10AG1 WILD-TYPE" 
       TCGA-05-5429        TCGA-05-5715        TCGA-35-3615        TCGA-35-4122 
"OR10AG1 WILD-TYPE" "OR10AG1 WILD-TYPE" "OR10AG1 WILD-TYPE" "OR10AG1 WILD-TYPE" 
       TCGA-35-4123        TCGA-35-5375        TCGA-38-4625        TCGA-38-4626 
"OR10AG1 WILD-TYPE" "OR10AG1 WILD-TYPE"   "OR10AG1 MUTATED" "OR10AG1 WILD-TYPE" 
       TCGA-38-4627        TCGA-38-4628        TCGA-38-4629        TCGA-38-4630 
"OR10AG1 WILD-TYPE" "OR10AG1 WILD-TYPE" "OR10AG1 WILD-TYPE" "OR10AG1 WILD-TYPE" 
       TCGA-38-4631        TCGA-38-4632        TCGA-38-6178        TCGA-44-2655 
"OR10AG1 WILD-TYPE" "OR10AG1 WILD-TYPE" "OR10AG1 WILD-TYPE" "OR10AG1 WILD-TYPE" 
       TCGA-44-2656        TCGA-44-2657        TCGA-44-2659        TCGA-44-2661 
"OR10AG1 WILD-TYPE" "OR10AG1 WILD-TYPE" "OR10AG1 WILD-TYPE" "OR10AG1 WILD-TYPE" 
       TCGA-44-2662        TCGA-44-2665        TCGA-44-2666        TCGA-44-2668 
"OR10AG1 WILD-TYPE" "OR10AG1 WILD-TYPE" "OR10AG1 WILD-TYPE" "OR10AG1 WILD-TYPE" 
       TCGA-44-3396        TCGA-44-3398        TCGA-44-3918        TCGA-44-3919 
"OR10AG1 WILD-TYPE" "OR10AG1 WILD-TYPE" "OR10AG1 WILD-TYPE" "OR10AG1 WILD-TYPE" 
       TCGA-44-4112        TCGA-44-5643        TCGA-44-5645        TCGA-44-6144 
"OR10AG1 WILD-TYPE" "OR10AG1 WILD-TYPE" "OR10AG1 WILD-TYPE" "OR10AG1 WILD-TYPE" 
       TCGA-44-6145        TCGA-44-6146        TCGA-44-6147        TCGA-44-6148 
  "OR10AG1 MUTATED" "OR10AG1 WILD-TYPE" "OR10AG1 WILD-TYPE" "OR10AG1 WILD-TYPE" 
       TCGA-44-6774        TCGA-44-6775        TCGA-44-6776        TCGA-44-6777 
"OR10AG1 WILD-TYPE" "OR10AG1 WILD-TYPE" "OR10AG1 WILD-TYPE" "OR10AG1 WILD-TYPE" 
       TCGA-44-6778        TCGA-44-6779        TCGA-49-4486        TCGA-49-4487 
"OR10AG1 WILD-TYPE" "OR10AG1 WILD-TYPE" "OR10AG1 WILD-TYPE" "OR10AG1 WILD-TYPE" 
       TCGA-49-4488        TCGA-49-4490        TCGA-49-4494        TCGA-49-4501 
"OR10AG1 WILD-TYPE" "OR10AG1 WILD-TYPE" "OR10AG1 WILD-TYPE" "OR10AG1 WILD-TYPE" 
       TCGA-49-4505        TCGA-49-4506        TCGA-49-4507        TCGA-49-4510 
"OR10AG1 WILD-TYPE" "OR10AG1 WILD-TYPE" "OR10AG1 WILD-TYPE" "OR10AG1 WILD-TYPE" 
       TCGA-49-4512        TCGA-49-4514        TCGA-49-6742        TCGA-49-6743 
"OR10AG1 WILD-TYPE" "OR10AG1 WILD-TYPE" "OR10AG1 WILD-TYPE" "OR10AG1 WILD-TYPE" 
       TCGA-49-6744        TCGA-49-6745        TCGA-50-5044        TCGA-50-5045 
"OR10AG1 WILD-TYPE" "OR10AG1 WILD-TYPE" "OR10AG1 WILD-TYPE" "OR10AG1 WILD-TYPE" 
       TCGA-50-5049        TCGA-50-5051        TCGA-50-5055        TCGA-50-5066 
"OR10AG1 WILD-TYPE" "OR10AG1 WILD-TYPE" "OR10AG1 WILD-TYPE" "OR10AG1 WILD-TYPE" 
       TCGA-50-5068        TCGA-50-5072        TCGA-50-5930        TCGA-50-5931 
"OR10AG1 WILD-TYPE" "OR10AG1 WILD-TYPE" "OR10AG1 WILD-TYPE" "OR10AG1 WILD-TYPE" 
       TCGA-50-5932        TCGA-50-5933        TCGA-50-5935        TCGA-50-5936 
"OR10AG1 WILD-TYPE" "OR10AG1 WILD-TYPE" "OR10AG1 WILD-TYPE" "OR10AG1 WILD-TYPE" 
       TCGA-50-5939        TCGA-50-5941        TCGA-50-5942        TCGA-50-5944 
"OR10AG1 WILD-TYPE" "OR10AG1 WILD-TYPE" "OR10AG1 WILD-TYPE" "OR10AG1 WILD-TYPE" 
       TCGA-50-5946        TCGA-50-6590        TCGA-50-6591        TCGA-50-6592 
"OR10AG1 WILD-TYPE"   "OR10AG1 MUTATED" "OR10AG1 WILD-TYPE" "OR10AG1 WILD-TYPE" 
       TCGA-50-6593        TCGA-50-6594        TCGA-50-6595        TCGA-50-6597 
"OR10AG1 WILD-TYPE" "OR10AG1 WILD-TYPE" "OR10AG1 WILD-TYPE" "OR10AG1 WILD-TYPE" 
       TCGA-55-1592        TCGA-55-1594        TCGA-55-1595        TCGA-55-1596 
"OR10AG1 WILD-TYPE" "OR10AG1 WILD-TYPE" "OR10AG1 WILD-TYPE" "OR10AG1 WILD-TYPE" 
       TCGA-55-5899        TCGA-55-6543        TCGA-55-6642        TCGA-55-6712 
"OR10AG1 WILD-TYPE" "OR10AG1 WILD-TYPE" "OR10AG1 WILD-TYPE" "OR10AG1 WILD-TYPE" 
       TCGA-64-1676        TCGA-64-1677        TCGA-64-1678        TCGA-64-1680 
"OR10AG1 WILD-TYPE" "OR10AG1 WILD-TYPE" "OR10AG1 WILD-TYPE" "OR10AG1 WILD-TYPE" 
       TCGA-64-5774        TCGA-64-5775        TCGA-64-5778        TCGA-64-5779 
"OR10AG1 WILD-TYPE" "OR10AG1 WILD-TYPE" "OR10AG1 WILD-TYPE" "OR10AG1 WILD-TYPE" 
       TCGA-64-5781        TCGA-64-5815        TCGA-67-3770        TCGA-67-3771 
"OR10AG1 WILD-TYPE" "OR10AG1 WILD-TYPE" "OR10AG1 WILD-TYPE"   "OR10AG1 MUTATED" 
       TCGA-67-3772        TCGA-67-3773        TCGA-67-3774        TCGA-67-6215 
"OR10AG1 WILD-TYPE" "OR10AG1 WILD-TYPE" "OR10AG1 WILD-TYPE" "OR10AG1 WILD-TYPE" 
       TCGA-67-6216        TCGA-67-6217        TCGA-71-6725        TCGA-73-4658 
"OR10AG1 WILD-TYPE" "OR10AG1 WILD-TYPE" "OR10AG1 WILD-TYPE" "OR10AG1 WILD-TYPE" 
       TCGA-73-4659        TCGA-73-4662        TCGA-73-4666        TCGA-73-4668 
"OR10AG1 WILD-TYPE" "OR10AG1 WILD-TYPE" "OR10AG1 WILD-TYPE" "OR10AG1 WILD-TYPE" 
       TCGA-73-4670        TCGA-73-4675        TCGA-73-4676        TCGA-73-4677 
"OR10AG1 WILD-TYPE" "OR10AG1 WILD-TYPE" "OR10AG1 WILD-TYPE" "OR10AG1 WILD-TYPE" 
       TCGA-91-6828        TCGA-91-6829        TCGA-91-6831        TCGA-91-6835 
"OR10AG1 WILD-TYPE" "OR10AG1 WILD-TYPE" "OR10AG1 WILD-TYPE" "OR10AG1 WILD-TYPE" 
       TCGA-91-6836 
"OR10AG1 WILD-TYPE" 
       TCGA-05-4249        TCGA-05-4250        TCGA-05-4382        TCGA-05-4384 
"OR10AG1 WILD-TYPE" "OR10AG1 WILD-TYPE" "OR10AG1 WILD-TYPE"   "OR10AG1 MUTATED" 
       TCGA-05-4390        TCGA-05-4396        TCGA-05-4397        TCGA-05-4398 
"OR10AG1 WILD-TYPE" "OR10AG1 WILD-TYPE"   "OR10AG1 MUTATED" "OR10AG1 WILD-TYPE" 
       TCGA-05-4402        TCGA-05-4405        TCGA-05-4415        TCGA-05-4417 
"OR10AG1 WILD-TYPE" "OR10AG1 WILD-TYPE" "OR10AG1 WILD-TYPE" "OR10AG1 WILD-TYPE" 
       TCGA-05-4418        TCGA-05-4420        TCGA-05-4424        TCGA-05-4426 
"OR10AG1 WILD-TYPE" "OR10AG1 WILD-TYPE" "OR10AG1 WILD-TYPE" "OR10AG1 WILD-TYPE" 
       TCGA-05-4427        TCGA-05-4430        TCGA-05-4432        TCGA-05-4433 
"OR10AG1 WILD-TYPE" "OR10AG1 WILD-TYPE" "OR10AG1 WILD-TYPE" "OR10AG1 WILD-TYPE" 
       TCGA-05-4434        TCGA-05-5420        TCGA-05-5423        TCGA-05-5425 
"OR10AG1 WILD-TYPE" "OR10AG1 WILD-TYPE" "OR10AG1 WILD-TYPE" "OR10AG1 WILD-TYPE" 
       TCGA-05-5429        TCGA-05-5715        TCGA-35-3615        TCGA-35-4122 
"OR10AG1 WILD-TYPE" "OR10AG1 WILD-TYPE" "OR10AG1 WILD-TYPE" "OR10AG1 WILD-TYPE" 
       TCGA-35-4123        TCGA-35-5375        TCGA-38-4625        TCGA-38-4626 
"OR10AG1 WILD-TYPE" "OR10AG1 WILD-TYPE"   "OR10AG1 MUTATED" "OR10AG1 WILD-TYPE" 
       TCGA-38-4627        TCGA-38-4628        TCGA-38-4629        TCGA-38-4630 
"OR10AG1 WILD-TYPE" "OR10AG1 WILD-TYPE" "OR10AG1 WILD-TYPE" "OR10AG1 WILD-TYPE" 
       TCGA-38-4631        TCGA-38-4632        TCGA-38-6178        TCGA-44-2655 
"OR10AG1 WILD-TYPE" "OR10AG1 WILD-TYPE" "OR10AG1 WILD-TYPE" "OR10AG1 WILD-TYPE" 
       TCGA-44-2656        TCGA-44-2657        TCGA-44-2659        TCGA-44-2661 
"OR10AG1 WILD-TYPE" "OR10AG1 WILD-TYPE" "OR10AG1 WILD-TYPE" "OR10AG1 WILD-TYPE" 
       TCGA-44-2662        TCGA-44-2665        TCGA-44-2666        TCGA-44-2668 
"OR10AG1 WILD-TYPE" "OR10AG1 WILD-TYPE" "OR10AG1 WILD-TYPE" "OR10AG1 WILD-TYPE" 
       TCGA-44-3396        TCGA-44-3398        TCGA-44-3918        TCGA-44-3919 
"OR10AG1 WILD-TYPE" "OR10AG1 WILD-TYPE" "OR10AG1 WILD-TYPE" "OR10AG1 WILD-TYPE" 
       TCGA-44-4112        TCGA-44-5643        TCGA-44-5645        TCGA-44-6144 
"OR10AG1 WILD-TYPE" "OR10AG1 WILD-TYPE" "OR10AG1 WILD-TYPE" "OR10AG1 WILD-TYPE" 
       TCGA-44-6145        TCGA-44-6146        TCGA-44-6147        TCGA-44-6148 
  "OR10AG1 MUTATED" "OR10AG1 WILD-TYPE" "OR10AG1 WILD-TYPE" "OR10AG1 WILD-TYPE" 
       TCGA-44-6774        TCGA-44-6775        TCGA-44-6776        TCGA-44-6777 
"OR10AG1 WILD-TYPE" "OR10AG1 WILD-TYPE" "OR10AG1 WILD-TYPE" "OR10AG1 WILD-TYPE" 
       TCGA-44-6778        TCGA-44-6779        TCGA-49-4486        TCGA-49-4487 
"OR10AG1 WILD-TYPE" "OR10AG1 WILD-TYPE" "OR10AG1 WILD-TYPE" "OR10AG1 WILD-TYPE" 
       TCGA-49-4488        TCGA-49-4490        TCGA-49-4494        TCGA-49-4501 
"OR10AG1 WILD-TYPE" "OR10AG1 WILD-TYPE" "OR10AG1 WILD-TYPE" "OR10AG1 WILD-TYPE" 
       TCGA-49-4505        TCGA-49-4506        TCGA-49-4507        TCGA-49-4510 
"OR10AG1 WILD-TYPE" "OR10AG1 WILD-TYPE" "OR10AG1 WILD-TYPE" "OR10AG1 WILD-TYPE" 
       TCGA-49-4512        TCGA-49-4514        TCGA-49-6742        TCGA-49-6743 
"OR10AG1 WILD-TYPE" "OR10AG1 WILD-TYPE" "OR10AG1 WILD-TYPE" "OR10AG1 WILD-TYPE" 
       TCGA-49-6744        TCGA-49-6745        TCGA-50-5044        TCGA-50-5045 
"OR10AG1 WILD-TYPE" "OR10AG1 WILD-TYPE" "OR10AG1 WILD-TYPE" "OR10AG1 WILD-TYPE" 
       TCGA-50-5049        TCGA-50-5051        TCGA-50-5055        TCGA-50-5066 
"OR10AG1 WILD-TYPE" "OR10AG1 WILD-TYPE" "OR10AG1 WILD-TYPE" "OR10AG1 WILD-TYPE" 
       TCGA-50-5068        TCGA-50-5072        TCGA-50-5930        TCGA-50-5931 
"OR10AG1 WILD-TYPE" "OR10AG1 WILD-TYPE" "OR10AG1 WILD-TYPE" "OR10AG1 WILD-TYPE" 
       TCGA-50-5932        TCGA-50-5933        TCGA-50-5935        TCGA-50-5936 
"OR10AG1 WILD-TYPE" "OR10AG1 WILD-TYPE" "OR10AG1 WILD-TYPE" "OR10AG1 WILD-TYPE" 
       TCGA-50-5939        TCGA-50-5941        TCGA-50-5942        TCGA-50-5944 
"OR10AG1 WILD-TYPE" "OR10AG1 WILD-TYPE" "OR10AG1 WILD-TYPE" "OR10AG1 WILD-TYPE" 
       TCGA-50-5946        TCGA-50-6590        TCGA-50-6591        TCGA-50-6592 
"OR10AG1 WILD-TYPE"   "OR10AG1 MUTATED" "OR10AG1 WILD-TYPE" "OR10AG1 WILD-TYPE" 
       TCGA-50-6593        TCGA-50-6594        TCGA-50-6595        TCGA-50-6597 
"OR10AG1 WILD-TYPE" "OR10AG1 WILD-TYPE" "OR10AG1 WILD-TYPE" "OR10AG1 WILD-TYPE" 
       TCGA-55-1592        TCGA-55-1594        TCGA-55-1595        TCGA-55-1596 
"OR10AG1 WILD-TYPE" "OR10AG1 WILD-TYPE" "OR10AG1 WILD-TYPE" "OR10AG1 WILD-TYPE" 
       TCGA-55-5899        TCGA-55-6543        TCGA-55-6642        TCGA-55-6712 
"OR10AG1 WILD-TYPE" "OR10AG1 WILD-TYPE" "OR10AG1 WILD-TYPE" "OR10AG1 WILD-TYPE" 
       TCGA-64-1676        TCGA-64-1677        TCGA-64-1678        TCGA-64-1680 
"OR10AG1 WILD-TYPE" "OR10AG1 WILD-TYPE" "OR10AG1 WILD-TYPE" "OR10AG1 WILD-TYPE" 
       TCGA-64-5774        TCGA-64-5775        TCGA-64-5778        TCGA-64-5779 
"OR10AG1 WILD-TYPE" "OR10AG1 WILD-TYPE" "OR10AG1 WILD-TYPE" "OR10AG1 WILD-TYPE" 
       TCGA-64-5781        TCGA-64-5815        TCGA-67-3770        TCGA-67-3771 
"OR10AG1 WILD-TYPE" "OR10AG1 WILD-TYPE" "OR10AG1 WILD-TYPE"   "OR10AG1 MUTATED" 
       TCGA-67-3772        TCGA-67-3773        TCGA-67-3774        TCGA-67-6215 
"OR10AG1 WILD-TYPE" "OR10AG1 WILD-TYPE" "OR10AG1 WILD-TYPE" "OR10AG1 WILD-TYPE" 
       TCGA-67-6216        TCGA-67-6217        TCGA-71-6725        TCGA-73-4658 
"OR10AG1 WILD-TYPE" "OR10AG1 WILD-TYPE" "OR10AG1 WILD-TYPE" "OR10AG1 WILD-TYPE" 
       TCGA-73-4659        TCGA-73-4662        TCGA-73-4666        TCGA-73-4668 
"OR10AG1 WILD-TYPE" "OR10AG1 WILD-TYPE" "OR10AG1 WILD-TYPE" "OR10AG1 WILD-TYPE" 
       TCGA-73-4670        TCGA-73-4675        TCGA-73-4676        TCGA-73-4677 
"OR10AG1 WILD-TYPE" "OR10AG1 WILD-TYPE" "OR10AG1 WILD-TYPE" "OR10AG1 WILD-TYPE" 
       TCGA-91-6828        TCGA-91-6829        TCGA-91-6831        TCGA-91-6835 
"OR10AG1 WILD-TYPE" "OR10AG1 WILD-TYPE" "OR10AG1 WILD-TYPE" "OR10AG1 WILD-TYPE" 
       TCGA-91-6836 
"OR10AG1 WILD-TYPE" 
       TCGA-05-4249        TCGA-05-4250        TCGA-05-4382        TCGA-05-4384 
"OR10AG1 WILD-TYPE" "OR10AG1 WILD-TYPE" "OR10AG1 WILD-TYPE"   "OR10AG1 MUTATED" 
       TCGA-05-4390        TCGA-05-4396        TCGA-05-4397        TCGA-05-4398 
"OR10AG1 WILD-TYPE" "OR10AG1 WILD-TYPE"   "OR10AG1 MUTATED" "OR10AG1 WILD-TYPE" 
       TCGA-05-4402        TCGA-05-4405        TCGA-05-4415        TCGA-05-4417 
"OR10AG1 WILD-TYPE" "OR10AG1 WILD-TYPE" "OR10AG1 WILD-TYPE" "OR10AG1 WILD-TYPE" 
       TCGA-05-4418        TCGA-05-4420        TCGA-05-4424        TCGA-05-4426 
"OR10AG1 WILD-TYPE" "OR10AG1 WILD-TYPE" "OR10AG1 WILD-TYPE" "OR10AG1 WILD-TYPE" 
       TCGA-05-4427        TCGA-05-4430        TCGA-05-4432        TCGA-05-4433 
"OR10AG1 WILD-TYPE" "OR10AG1 WILD-TYPE" "OR10AG1 WILD-TYPE" "OR10AG1 WILD-TYPE" 
       TCGA-05-4434        TCGA-05-5420        TCGA-05-5423        TCGA-05-5425 
"OR10AG1 WILD-TYPE" "OR10AG1 WILD-TYPE" "OR10AG1 WILD-TYPE" "OR10AG1 WILD-TYPE" 
       TCGA-05-5429        TCGA-05-5715        TCGA-35-3615        TCGA-35-4122 
"OR10AG1 WILD-TYPE" "OR10AG1 WILD-TYPE" "OR10AG1 WILD-TYPE" "OR10AG1 WILD-TYPE" 
       TCGA-35-4123        TCGA-35-5375        TCGA-38-4625        TCGA-38-4626 
"OR10AG1 WILD-TYPE" "OR10AG1 WILD-TYPE"   "OR10AG1 MUTATED" "OR10AG1 WILD-TYPE" 
       TCGA-38-4627        TCGA-38-4628        TCGA-38-4629        TCGA-38-4630 
"OR10AG1 WILD-TYPE" "OR10AG1 WILD-TYPE" "OR10AG1 WILD-TYPE" "OR10AG1 WILD-TYPE" 
       TCGA-38-4631        TCGA-38-4632        TCGA-38-6178        TCGA-44-2655 
"OR10AG1 WILD-TYPE" "OR10AG1 WILD-TYPE" "OR10AG1 WILD-TYPE" "OR10AG1 WILD-TYPE" 
       TCGA-44-2656        TCGA-44-2657        TCGA-44-2659        TCGA-44-2661 
"OR10AG1 WILD-TYPE" "OR10AG1 WILD-TYPE" "OR10AG1 WILD-TYPE" "OR10AG1 WILD-TYPE" 
       TCGA-44-2662        TCGA-44-2665        TCGA-44-2666        TCGA-44-2668 
"OR10AG1 WILD-TYPE" "OR10AG1 WILD-TYPE" "OR10AG1 WILD-TYPE" "OR10AG1 WILD-TYPE" 
       TCGA-44-3396        TCGA-44-3398        TCGA-44-3918        TCGA-44-3919 
"OR10AG1 WILD-TYPE" "OR10AG1 WILD-TYPE" "OR10AG1 WILD-TYPE" "OR10AG1 WILD-TYPE" 
       TCGA-44-4112        TCGA-44-5643        TCGA-44-5645        TCGA-44-6144 
"OR10AG1 WILD-TYPE" "OR10AG1 WILD-TYPE" "OR10AG1 WILD-TYPE" "OR10AG1 WILD-TYPE" 
       TCGA-44-6145        TCGA-44-6146        TCGA-44-6147        TCGA-44-6148 
  "OR10AG1 MUTATED" "OR10AG1 WILD-TYPE" "OR10AG1 WILD-TYPE" "OR10AG1 WILD-TYPE" 
       TCGA-44-6774        TCGA-44-6775        TCGA-44-6776        TCGA-44-6777 
"OR10AG1 WILD-TYPE" "OR10AG1 WILD-TYPE" "OR10AG1 WILD-TYPE" "OR10AG1 WILD-TYPE" 
       TCGA-44-6778        TCGA-44-6779        TCGA-49-4486        TCGA-49-4487 
"OR10AG1 WILD-TYPE" "OR10AG1 WILD-TYPE" "OR10AG1 WILD-TYPE" "OR10AG1 WILD-TYPE" 
       TCGA-49-4488        TCGA-49-4490        TCGA-49-4494        TCGA-49-4501 
"OR10AG1 WILD-TYPE" "OR10AG1 WILD-TYPE" "OR10AG1 WILD-TYPE" "OR10AG1 WILD-TYPE" 
       TCGA-49-4505        TCGA-49-4506        TCGA-49-4507        TCGA-49-4510 
"OR10AG1 WILD-TYPE" "OR10AG1 WILD-TYPE" "OR10AG1 WILD-TYPE" "OR10AG1 WILD-TYPE" 
       TCGA-49-4512        TCGA-49-4514        TCGA-49-6742        TCGA-49-6743 
"OR10AG1 WILD-TYPE" "OR10AG1 WILD-TYPE" "OR10AG1 WILD-TYPE" "OR10AG1 WILD-TYPE" 
       TCGA-49-6744        TCGA-49-6745        TCGA-50-5044        TCGA-50-5045 
"OR10AG1 WILD-TYPE" "OR10AG1 WILD-TYPE" "OR10AG1 WILD-TYPE" "OR10AG1 WILD-TYPE" 
       TCGA-50-5049        TCGA-50-5051        TCGA-50-5055        TCGA-50-5066 
"OR10AG1 WILD-TYPE" "OR10AG1 WILD-TYPE" "OR10AG1 WILD-TYPE" "OR10AG1 WILD-TYPE" 
       TCGA-50-5068        TCGA-50-5072        TCGA-50-5930        TCGA-50-5931 
"OR10AG1 WILD-TYPE" "OR10AG1 WILD-TYPE" "OR10AG1 WILD-TYPE" "OR10AG1 WILD-TYPE" 
       TCGA-50-5932        TCGA-50-5933        TCGA-50-5935        TCGA-50-5936 
"OR10AG1 WILD-TYPE" "OR10AG1 WILD-TYPE" "OR10AG1 WILD-TYPE" "OR10AG1 WILD-TYPE" 
       TCGA-50-5939        TCGA-50-5941        TCGA-50-5942        TCGA-50-5944 
"OR10AG1 WILD-TYPE" "OR10AG1 WILD-TYPE" "OR10AG1 WILD-TYPE" "OR10AG1 WILD-TYPE" 
       TCGA-50-5946        TCGA-50-6590        TCGA-50-6591        TCGA-50-6592 
"OR10AG1 WILD-TYPE"   "OR10AG1 MUTATED" "OR10AG1 WILD-TYPE" "OR10AG1 WILD-TYPE" 
       TCGA-50-6593        TCGA-50-6594        TCGA-50-6595        TCGA-50-6597 
"OR10AG1 WILD-TYPE" "OR10AG1 WILD-TYPE" "OR10AG1 WILD-TYPE" "OR10AG1 WILD-TYPE" 
       TCGA-55-1592        TCGA-55-1594        TCGA-55-1595        TCGA-55-1596 
"OR10AG1 WILD-TYPE" "OR10AG1 WILD-TYPE" "OR10AG1 WILD-TYPE" "OR10AG1 WILD-TYPE" 
       TCGA-55-5899        TCGA-55-6543        TCGA-55-6642        TCGA-55-6712 
"OR10AG1 WILD-TYPE" "OR10AG1 WILD-TYPE" "OR10AG1 WILD-TYPE" "OR10AG1 WILD-TYPE" 
       TCGA-64-1676        TCGA-64-1677        TCGA-64-1678        TCGA-64-1680 
"OR10AG1 WILD-TYPE" "OR10AG1 WILD-TYPE" "OR10AG1 WILD-TYPE" "OR10AG1 WILD-TYPE" 
       TCGA-64-5774        TCGA-64-5775        TCGA-64-5778        TCGA-64-5779 
"OR10AG1 WILD-TYPE" "OR10AG1 WILD-TYPE" "OR10AG1 WILD-TYPE" "OR10AG1 WILD-TYPE" 
       TCGA-64-5781        TCGA-64-5815        TCGA-67-3770        TCGA-67-3771 
"OR10AG1 WILD-TYPE" "OR10AG1 WILD-TYPE" "OR10AG1 WILD-TYPE"   "OR10AG1 MUTATED" 
       TCGA-67-3772        TCGA-67-3773        TCGA-67-3774        TCGA-67-6215 
"OR10AG1 WILD-TYPE" "OR10AG1 WILD-TYPE" "OR10AG1 WILD-TYPE" "OR10AG1 WILD-TYPE" 
       TCGA-67-6216        TCGA-67-6217        TCGA-71-6725        TCGA-73-4658 
"OR10AG1 WILD-TYPE" "OR10AG1 WILD-TYPE" "OR10AG1 WILD-TYPE" "OR10AG1 WILD-TYPE" 
       TCGA-73-4659        TCGA-73-4662        TCGA-73-4666        TCGA-73-4668 
"OR10AG1 WILD-TYPE" "OR10AG1 WILD-TYPE" "OR10AG1 WILD-TYPE" "OR10AG1 WILD-TYPE" 
       TCGA-73-4670        TCGA-73-4675        TCGA-73-4676        TCGA-73-4677 
"OR10AG1 WILD-TYPE" "OR10AG1 WILD-TYPE" "OR10AG1 WILD-TYPE" "OR10AG1 WILD-TYPE" 
       TCGA-91-6828        TCGA-91-6829        TCGA-91-6831        TCGA-91-6835 
"OR10AG1 WILD-TYPE" "OR10AG1 WILD-TYPE" "OR10AG1 WILD-TYPE" "OR10AG1 WILD-TYPE" 
       TCGA-91-6836 
"OR10AG1 WILD-TYPE" 
[1] "hr=" "1.2"
D232V2, continuous
D232V3, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  OR10AG1 MUTATED      4    2
  OR10AG1 WILD-TYPE   89   77
        clus
vv       OR10AG1 MUTATED OR10AG1 WILD-TYPE
  FEMALE               4                89
  MALE                 2                77
D232V4, continuous
D232V5, multiclass
D232V6, multiclass
    clus
vv   OR10AG1 MUTATED OR10AG1 WILD-TYPE
  T1               2                39
  T2               4               104
  T3               0                14
  T4               0                 8
D232V7, multiclass
       clus
vv      OR10AG1 MUTATED OR10AG1 WILD-TYPE
  N0                  4                91
  N1                  1                36
  N2+N3               1                34
D232V8, multiclass
    clus
vv   OR10AG1 MUTATED OR10AG1 WILD-TYPE
  M0               6               131
  M1               0                 9
  MX               0                22
D232V9, multiclass
     clus
vv    OR10AG1 MUTATED OR10AG1 WILD-TYPE
  I                 4                84
  II                1                32
  III               1                38
  IV                0                 9
D232V10, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  OR10AG1 MUTATED      0    6
  OR10AG1 WILD-TYPE   16  150
     clus
vv    OR10AG1 MUTATED OR10AG1 WILD-TYPE
  NO                0                16
  YES               6               150
D232V11, continuous
D232V12, continuous
D232V13, multiclass
                                             clus
vv                                            OR10AG1 MUTATED OR10AG1 WILD-TYPE
  CURRENT REFORMED SMOKER FOR < OR = 15 YEARS               3                59
  CURRENT REFORMED SMOKER FOR > 15 YEARS                    1                45
  CURRENT SMOKER                                            2                26
  LIFELONG NON-SMOKER                                       0                24
D232V14, continuous

Clustering(233) Variable = ZWINT MUTATION ANALYSIS
D233V1, survival
                 sevent
clus2              0  1
  ZWINT MUTATED    2  3
  ZWINT WILD-TYPE 97 47
  ZWINT MUTATED ZWINT WILD-TYPE 
              5             144 
  ZWINT MUTATED ZWINT WILD-TYPE 
              3              47 
$`ZWINT MUTATED`
TCGA-05-4397 TCGA-05-4427 TCGA-49-4506 TCGA-49-6744 TCGA-50-6593 
       24.03        26.01        32.84        12.99        11.05 

$`ZWINT WILD-TYPE`
TCGA-05-4249 TCGA-05-4250 TCGA-05-4382 TCGA-05-4384 TCGA-05-4390 TCGA-05-4396 
       38.07         3.98        19.92        14.01        37.02         9.96 
TCGA-05-4398 TCGA-05-4402 TCGA-05-4405 TCGA-05-4415 TCGA-05-4417 TCGA-05-4418 
       47.05         8.02        20.05         2.96        14.93         8.98 
TCGA-05-4420 TCGA-05-4424 TCGA-05-4426 TCGA-05-4430 TCGA-05-4432 TCGA-05-4433 
       29.95        30.02        26.01        25.02        25.02        24.00 
TCGA-05-4434 TCGA-05-5420 TCGA-05-5423 TCGA-05-5425 TCGA-05-5429 TCGA-05-5715 
       15.02         1.02         4.96         2.96         0.99         2.04 
TCGA-35-3615 TCGA-35-4122 TCGA-35-4123 TCGA-35-5375 TCGA-38-4625 TCGA-38-4626 
        0.46         7.36         5.95         8.68        47.61        85.32 
TCGA-38-4627 TCGA-38-4628 TCGA-38-4629 TCGA-38-4630 TCGA-38-4631 TCGA-38-4632 
       37.71        49.02        28.37        35.28        11.64        44.61 
TCGA-38-6178 TCGA-44-2655 TCGA-44-2656 TCGA-44-2657 TCGA-44-2659 TCGA-44-2661 
        5.19        18.87        19.10        13.15        17.39         3.39 
TCGA-44-2662 TCGA-44-2665 TCGA-44-2666 TCGA-44-2668 TCGA-44-3396 TCGA-44-3398 
       15.78        13.15         3.19         8.09        10.22         8.32 
TCGA-44-3918 TCGA-44-3919 TCGA-44-4112 TCGA-44-5643 TCGA-44-5645 TCGA-44-6144 
        6.44         6.21         4.60         3.48         6.84         0.30 
TCGA-44-6145 TCGA-44-6146 TCGA-44-6147 TCGA-44-6148 TCGA-44-6774 TCGA-44-6775 
        3.35         9.93         7.76         3.12         5.42         2.70 
TCGA-44-6776 TCGA-44-6777 TCGA-44-6778 TCGA-44-6779 TCGA-49-4486 TCGA-49-4487 
       63.72        32.45        36.49        16.41        76.21        28.11 
TCGA-49-4488 TCGA-49-4490 TCGA-49-4494 TCGA-49-4501 TCGA-49-4505 TCGA-49-4507 
       28.57        12.66        35.54        46.72        14.07         8.81 
TCGA-49-4510 TCGA-49-4512 TCGA-49-4514 TCGA-49-6742 TCGA-49-6743 TCGA-49-6745 
       29.46        29.75        43.20        15.02        12.13         4.93 
TCGA-50-5044 TCGA-50-5045 TCGA-50-5049 TCGA-50-5051 TCGA-50-5055 TCGA-50-5066 
       20.48        71.47        48.82        14.96        25.81         9.76 
TCGA-50-5068 TCGA-50-5072 TCGA-50-5930 TCGA-50-5931 TCGA-50-5932 TCGA-50-5933 
       49.28         8.05         9.27         8.78        35.87        77.88 
TCGA-50-5935 TCGA-50-5936 TCGA-50-5939 TCGA-50-5941 TCGA-50-5942 TCGA-50-5944 
       21.47         8.45        15.12         9.37         4.44        12.26 
TCGA-50-5946 TCGA-50-6590 TCGA-50-6591 TCGA-50-6592 TCGA-50-6594 TCGA-50-6595 
       11.47        42.31         3.88        25.51        12.16         6.21 
TCGA-50-6597 TCGA-55-1592 TCGA-55-1594 TCGA-55-1595 TCGA-55-1596 TCGA-55-5899 
       33.37        23.05        38.73        48.62        45.17         2.86 
TCGA-55-6543 TCGA-55-6642 TCGA-55-6712 TCGA-64-1676 TCGA-64-1677 TCGA-64-1678 
        0.07        32.61         0.79        56.81        20.65        39.09 
TCGA-64-1680 TCGA-64-5774 TCGA-64-5775 TCGA-64-5778 TCGA-64-5779 TCGA-64-5781 
       37.02        83.84         0.10        30.44        16.67        39.52 
TCGA-64-5815 TCGA-67-3770 TCGA-67-3771 TCGA-67-3772 TCGA-67-3773 TCGA-67-3774 
        7.33         0.99         1.97         0.59         2.04         0.59 
TCGA-67-6215 TCGA-67-6216 TCGA-67-6217 TCGA-71-6725 TCGA-73-4658 TCGA-73-4659 
        0.89         0.69        13.87         2.01        52.57        23.38 
TCGA-73-4662 TCGA-73-4666 TCGA-73-4668 TCGA-73-4670 TCGA-73-4675 TCGA-73-4676 
       29.95        20.28        15.35         0.46         1.32         4.01 
TCGA-73-4677 TCGA-91-6828 TCGA-91-6829 TCGA-91-6831 TCGA-91-6835 TCGA-91-6836 
        1.25         1.22        41.33         1.28         1.15         0.36 

  ZWINT MUTATED ZWINT WILD-TYPE 
          11.05            0.07 
  ZWINT MUTATED ZWINT WILD-TYPE 
          32.84           85.32 
  ZWINT MUTATED ZWINT WILD-TYPE 
          24.03           13.51 
[1] "11.1 - 32.8 (24.0)" "0.1 - 85.3 (13.5)" 
     TCGA-05-4249      TCGA-05-4250      TCGA-05-4382      TCGA-05-4384 
"ZWINT WILD-TYPE" "ZWINT WILD-TYPE" "ZWINT WILD-TYPE" "ZWINT WILD-TYPE" 
     TCGA-05-4390      TCGA-05-4396      TCGA-05-4397      TCGA-05-4398 
"ZWINT WILD-TYPE" "ZWINT WILD-TYPE"   "ZWINT MUTATED" "ZWINT WILD-TYPE" 
     TCGA-05-4402      TCGA-05-4405      TCGA-05-4415      TCGA-05-4417 
"ZWINT WILD-TYPE" "ZWINT WILD-TYPE" "ZWINT WILD-TYPE" "ZWINT WILD-TYPE" 
     TCGA-05-4418      TCGA-05-4420      TCGA-05-4424      TCGA-05-4426 
"ZWINT WILD-TYPE" "ZWINT WILD-TYPE" "ZWINT WILD-TYPE" "ZWINT WILD-TYPE" 
     TCGA-05-4427      TCGA-05-4430      TCGA-05-4432      TCGA-05-4433 
  "ZWINT MUTATED" "ZWINT WILD-TYPE" "ZWINT WILD-TYPE" "ZWINT WILD-TYPE" 
     TCGA-05-4434      TCGA-05-5420      TCGA-05-5423      TCGA-05-5425 
"ZWINT WILD-TYPE" "ZWINT WILD-TYPE" "ZWINT WILD-TYPE" "ZWINT WILD-TYPE" 
     TCGA-05-5429      TCGA-05-5715      TCGA-35-3615      TCGA-35-4122 
"ZWINT WILD-TYPE" "ZWINT WILD-TYPE" "ZWINT WILD-TYPE" "ZWINT WILD-TYPE" 
     TCGA-35-4123      TCGA-35-5375      TCGA-38-4625      TCGA-38-4626 
"ZWINT WILD-TYPE" "ZWINT WILD-TYPE" "ZWINT WILD-TYPE" "ZWINT WILD-TYPE" 
     TCGA-38-4627      TCGA-38-4628      TCGA-38-4629      TCGA-38-4630 
"ZWINT WILD-TYPE" "ZWINT WILD-TYPE" "ZWINT WILD-TYPE" "ZWINT WILD-TYPE" 
     TCGA-38-4631      TCGA-38-4632      TCGA-38-6178      TCGA-44-2655 
"ZWINT WILD-TYPE" "ZWINT WILD-TYPE" "ZWINT WILD-TYPE" "ZWINT WILD-TYPE" 
     TCGA-44-2656      TCGA-44-2657      TCGA-44-2659      TCGA-44-2661 
"ZWINT WILD-TYPE" "ZWINT WILD-TYPE" "ZWINT WILD-TYPE" "ZWINT WILD-TYPE" 
     TCGA-44-2662      TCGA-44-2665      TCGA-44-2666      TCGA-44-2668 
"ZWINT WILD-TYPE" "ZWINT WILD-TYPE" "ZWINT WILD-TYPE" "ZWINT WILD-TYPE" 
     TCGA-44-3396      TCGA-44-3398      TCGA-44-3918      TCGA-44-3919 
"ZWINT WILD-TYPE" "ZWINT WILD-TYPE" "ZWINT WILD-TYPE" "ZWINT WILD-TYPE" 
     TCGA-44-4112      TCGA-44-5643      TCGA-44-5645      TCGA-44-6144 
"ZWINT WILD-TYPE" "ZWINT WILD-TYPE" "ZWINT WILD-TYPE" "ZWINT WILD-TYPE" 
     TCGA-44-6145      TCGA-44-6146      TCGA-44-6147      TCGA-44-6148 
"ZWINT WILD-TYPE" "ZWINT WILD-TYPE" "ZWINT WILD-TYPE" "ZWINT WILD-TYPE" 
     TCGA-44-6774      TCGA-44-6775      TCGA-44-6776      TCGA-44-6777 
"ZWINT WILD-TYPE" "ZWINT WILD-TYPE" "ZWINT WILD-TYPE" "ZWINT WILD-TYPE" 
     TCGA-44-6778      TCGA-44-6779      TCGA-49-4486      TCGA-49-4487 
"ZWINT WILD-TYPE" "ZWINT WILD-TYPE" "ZWINT WILD-TYPE" "ZWINT WILD-TYPE" 
     TCGA-49-4488      TCGA-49-4490      TCGA-49-4494      TCGA-49-4501 
"ZWINT WILD-TYPE" "ZWINT WILD-TYPE" "ZWINT WILD-TYPE" "ZWINT WILD-TYPE" 
     TCGA-49-4505      TCGA-49-4506      TCGA-49-4507      TCGA-49-4510 
"ZWINT WILD-TYPE"   "ZWINT MUTATED" "ZWINT WILD-TYPE" "ZWINT WILD-TYPE" 
     TCGA-49-4512      TCGA-49-4514      TCGA-49-6742      TCGA-49-6743 
"ZWINT WILD-TYPE" "ZWINT WILD-TYPE" "ZWINT WILD-TYPE" "ZWINT WILD-TYPE" 
     TCGA-49-6744      TCGA-49-6745      TCGA-50-5044      TCGA-50-5045 
  "ZWINT MUTATED" "ZWINT WILD-TYPE" "ZWINT WILD-TYPE" "ZWINT WILD-TYPE" 
     TCGA-50-5049      TCGA-50-5051      TCGA-50-5055      TCGA-50-5066 
"ZWINT WILD-TYPE" "ZWINT WILD-TYPE" "ZWINT WILD-TYPE" "ZWINT WILD-TYPE" 
     TCGA-50-5068      TCGA-50-5072      TCGA-50-5930      TCGA-50-5931 
"ZWINT WILD-TYPE" "ZWINT WILD-TYPE" "ZWINT WILD-TYPE" "ZWINT WILD-TYPE" 
     TCGA-50-5932      TCGA-50-5933      TCGA-50-5935      TCGA-50-5936 
"ZWINT WILD-TYPE" "ZWINT WILD-TYPE" "ZWINT WILD-TYPE" "ZWINT WILD-TYPE" 
     TCGA-50-5939      TCGA-50-5941      TCGA-50-5942      TCGA-50-5944 
"ZWINT WILD-TYPE" "ZWINT WILD-TYPE" "ZWINT WILD-TYPE" "ZWINT WILD-TYPE" 
     TCGA-50-5946      TCGA-50-6590      TCGA-50-6591      TCGA-50-6592 
"ZWINT WILD-TYPE" "ZWINT WILD-TYPE" "ZWINT WILD-TYPE" "ZWINT WILD-TYPE" 
     TCGA-50-6593      TCGA-50-6594      TCGA-50-6595      TCGA-50-6597 
  "ZWINT MUTATED" "ZWINT WILD-TYPE" "ZWINT WILD-TYPE" "ZWINT WILD-TYPE" 
     TCGA-55-1592      TCGA-55-1594      TCGA-55-1595      TCGA-55-1596 
"ZWINT WILD-TYPE" "ZWINT WILD-TYPE" "ZWINT WILD-TYPE" "ZWINT WILD-TYPE" 
     TCGA-55-5899      TCGA-55-6543      TCGA-55-6642      TCGA-55-6712 
"ZWINT WILD-TYPE" "ZWINT WILD-TYPE" "ZWINT WILD-TYPE" "ZWINT WILD-TYPE" 
     TCGA-64-1676      TCGA-64-1677      TCGA-64-1678      TCGA-64-1680 
"ZWINT WILD-TYPE" "ZWINT WILD-TYPE" "ZWINT WILD-TYPE" "ZWINT WILD-TYPE" 
     TCGA-64-5774      TCGA-64-5775      TCGA-64-5778      TCGA-64-5779 
"ZWINT WILD-TYPE" "ZWINT WILD-TYPE" "ZWINT WILD-TYPE" "ZWINT WILD-TYPE" 
     TCGA-64-5781      TCGA-64-5815      TCGA-67-3770      TCGA-67-3771 
"ZWINT WILD-TYPE" "ZWINT WILD-TYPE" "ZWINT WILD-TYPE" "ZWINT WILD-TYPE" 
     TCGA-67-3772      TCGA-67-3773      TCGA-67-3774      TCGA-67-6215 
"ZWINT WILD-TYPE" "ZWINT WILD-TYPE" "ZWINT WILD-TYPE" "ZWINT WILD-TYPE" 
     TCGA-67-6216      TCGA-67-6217      TCGA-71-6725      TCGA-73-4658 
"ZWINT WILD-TYPE" "ZWINT WILD-TYPE" "ZWINT WILD-TYPE" "ZWINT WILD-TYPE" 
     TCGA-73-4659      TCGA-73-4662      TCGA-73-4666      TCGA-73-4668 
"ZWINT WILD-TYPE" "ZWINT WILD-TYPE" "ZWINT WILD-TYPE" "ZWINT WILD-TYPE" 
     TCGA-73-4670      TCGA-73-4675      TCGA-73-4676      TCGA-73-4677 
"ZWINT WILD-TYPE" "ZWINT WILD-TYPE" "ZWINT WILD-TYPE" "ZWINT WILD-TYPE" 
     TCGA-91-6828      TCGA-91-6829      TCGA-91-6831      TCGA-91-6835 
"ZWINT WILD-TYPE" "ZWINT WILD-TYPE" "ZWINT WILD-TYPE" "ZWINT WILD-TYPE" 
     TCGA-91-6836 
"ZWINT WILD-TYPE" 
     TCGA-05-4249      TCGA-05-4250      TCGA-05-4382      TCGA-05-4384 
"ZWINT WILD-TYPE" "ZWINT WILD-TYPE" "ZWINT WILD-TYPE" "ZWINT WILD-TYPE" 
     TCGA-05-4390      TCGA-05-4396      TCGA-05-4397      TCGA-05-4398 
"ZWINT WILD-TYPE" "ZWINT WILD-TYPE"   "ZWINT MUTATED" "ZWINT WILD-TYPE" 
     TCGA-05-4402      TCGA-05-4405      TCGA-05-4415      TCGA-05-4417 
"ZWINT WILD-TYPE" "ZWINT WILD-TYPE" "ZWINT WILD-TYPE" "ZWINT WILD-TYPE" 
     TCGA-05-4418      TCGA-05-4420      TCGA-05-4424      TCGA-05-4426 
"ZWINT WILD-TYPE" "ZWINT WILD-TYPE" "ZWINT WILD-TYPE" "ZWINT WILD-TYPE" 
     TCGA-05-4427      TCGA-05-4430      TCGA-05-4432      TCGA-05-4433 
  "ZWINT MUTATED" "ZWINT WILD-TYPE" "ZWINT WILD-TYPE" "ZWINT WILD-TYPE" 
     TCGA-05-4434      TCGA-05-5420      TCGA-05-5423      TCGA-05-5425 
"ZWINT WILD-TYPE" "ZWINT WILD-TYPE" "ZWINT WILD-TYPE" "ZWINT WILD-TYPE" 
     TCGA-05-5429      TCGA-05-5715      TCGA-35-3615      TCGA-35-4122 
"ZWINT WILD-TYPE" "ZWINT WILD-TYPE" "ZWINT WILD-TYPE" "ZWINT WILD-TYPE" 
     TCGA-35-4123      TCGA-35-5375      TCGA-38-4625      TCGA-38-4626 
"ZWINT WILD-TYPE" "ZWINT WILD-TYPE" "ZWINT WILD-TYPE" "ZWINT WILD-TYPE" 
     TCGA-38-4627      TCGA-38-4628      TCGA-38-4629      TCGA-38-4630 
"ZWINT WILD-TYPE" "ZWINT WILD-TYPE" "ZWINT WILD-TYPE" "ZWINT WILD-TYPE" 
     TCGA-38-4631      TCGA-38-4632      TCGA-38-6178      TCGA-44-2655 
"ZWINT WILD-TYPE" "ZWINT WILD-TYPE" "ZWINT WILD-TYPE" "ZWINT WILD-TYPE" 
     TCGA-44-2656      TCGA-44-2657      TCGA-44-2659      TCGA-44-2661 
"ZWINT WILD-TYPE" "ZWINT WILD-TYPE" "ZWINT WILD-TYPE" "ZWINT WILD-TYPE" 
     TCGA-44-2662      TCGA-44-2665      TCGA-44-2666      TCGA-44-2668 
"ZWINT WILD-TYPE" "ZWINT WILD-TYPE" "ZWINT WILD-TYPE" "ZWINT WILD-TYPE" 
     TCGA-44-3396      TCGA-44-3398      TCGA-44-3918      TCGA-44-3919 
"ZWINT WILD-TYPE" "ZWINT WILD-TYPE" "ZWINT WILD-TYPE" "ZWINT WILD-TYPE" 
     TCGA-44-4112      TCGA-44-5643      TCGA-44-5645      TCGA-44-6144 
"ZWINT WILD-TYPE" "ZWINT WILD-TYPE" "ZWINT WILD-TYPE" "ZWINT WILD-TYPE" 
     TCGA-44-6145      TCGA-44-6146      TCGA-44-6147      TCGA-44-6148 
"ZWINT WILD-TYPE" "ZWINT WILD-TYPE" "ZWINT WILD-TYPE" "ZWINT WILD-TYPE" 
     TCGA-44-6774      TCGA-44-6775      TCGA-44-6776      TCGA-44-6777 
"ZWINT WILD-TYPE" "ZWINT WILD-TYPE" "ZWINT WILD-TYPE" "ZWINT WILD-TYPE" 
     TCGA-44-6778      TCGA-44-6779      TCGA-49-4486      TCGA-49-4487 
"ZWINT WILD-TYPE" "ZWINT WILD-TYPE" "ZWINT WILD-TYPE" "ZWINT WILD-TYPE" 
     TCGA-49-4488      TCGA-49-4490      TCGA-49-4494      TCGA-49-4501 
"ZWINT WILD-TYPE" "ZWINT WILD-TYPE" "ZWINT WILD-TYPE" "ZWINT WILD-TYPE" 
     TCGA-49-4505      TCGA-49-4506      TCGA-49-4507      TCGA-49-4510 
"ZWINT WILD-TYPE"   "ZWINT MUTATED" "ZWINT WILD-TYPE" "ZWINT WILD-TYPE" 
     TCGA-49-4512      TCGA-49-4514      TCGA-49-6742      TCGA-49-6743 
"ZWINT WILD-TYPE" "ZWINT WILD-TYPE" "ZWINT WILD-TYPE" "ZWINT WILD-TYPE" 
     TCGA-49-6744      TCGA-49-6745      TCGA-50-5044      TCGA-50-5045 
  "ZWINT MUTATED" "ZWINT WILD-TYPE" "ZWINT WILD-TYPE" "ZWINT WILD-TYPE" 
     TCGA-50-5049      TCGA-50-5051      TCGA-50-5055      TCGA-50-5066 
"ZWINT WILD-TYPE" "ZWINT WILD-TYPE" "ZWINT WILD-TYPE" "ZWINT WILD-TYPE" 
     TCGA-50-5068      TCGA-50-5072      TCGA-50-5930      TCGA-50-5931 
"ZWINT WILD-TYPE" "ZWINT WILD-TYPE" "ZWINT WILD-TYPE" "ZWINT WILD-TYPE" 
     TCGA-50-5932      TCGA-50-5933      TCGA-50-5935      TCGA-50-5936 
"ZWINT WILD-TYPE" "ZWINT WILD-TYPE" "ZWINT WILD-TYPE" "ZWINT WILD-TYPE" 
     TCGA-50-5939      TCGA-50-5941      TCGA-50-5942      TCGA-50-5944 
"ZWINT WILD-TYPE" "ZWINT WILD-TYPE" "ZWINT WILD-TYPE" "ZWINT WILD-TYPE" 
     TCGA-50-5946      TCGA-50-6590      TCGA-50-6591      TCGA-50-6592 
"ZWINT WILD-TYPE" "ZWINT WILD-TYPE" "ZWINT WILD-TYPE" "ZWINT WILD-TYPE" 
     TCGA-50-6593      TCGA-50-6594      TCGA-50-6595      TCGA-50-6597 
  "ZWINT MUTATED" "ZWINT WILD-TYPE" "ZWINT WILD-TYPE" "ZWINT WILD-TYPE" 
     TCGA-55-1592      TCGA-55-1594      TCGA-55-1595      TCGA-55-1596 
"ZWINT WILD-TYPE" "ZWINT WILD-TYPE" "ZWINT WILD-TYPE" "ZWINT WILD-TYPE" 
     TCGA-55-5899      TCGA-55-6543      TCGA-55-6642      TCGA-55-6712 
"ZWINT WILD-TYPE" "ZWINT WILD-TYPE" "ZWINT WILD-TYPE" "ZWINT WILD-TYPE" 
     TCGA-64-1676      TCGA-64-1677      TCGA-64-1678      TCGA-64-1680 
"ZWINT WILD-TYPE" "ZWINT WILD-TYPE" "ZWINT WILD-TYPE" "ZWINT WILD-TYPE" 
     TCGA-64-5774      TCGA-64-5775      TCGA-64-5778      TCGA-64-5779 
"ZWINT WILD-TYPE" "ZWINT WILD-TYPE" "ZWINT WILD-TYPE" "ZWINT WILD-TYPE" 
     TCGA-64-5781      TCGA-64-5815      TCGA-67-3770      TCGA-67-3771 
"ZWINT WILD-TYPE" "ZWINT WILD-TYPE" "ZWINT WILD-TYPE" "ZWINT WILD-TYPE" 
     TCGA-67-3772      TCGA-67-3773      TCGA-67-3774      TCGA-67-6215 
"ZWINT WILD-TYPE" "ZWINT WILD-TYPE" "ZWINT WILD-TYPE" "ZWINT WILD-TYPE" 
     TCGA-67-6216      TCGA-67-6217      TCGA-71-6725      TCGA-73-4658 
"ZWINT WILD-TYPE" "ZWINT WILD-TYPE" "ZWINT WILD-TYPE" "ZWINT WILD-TYPE" 
     TCGA-73-4659      TCGA-73-4662      TCGA-73-4666      TCGA-73-4668 
"ZWINT WILD-TYPE" "ZWINT WILD-TYPE" "ZWINT WILD-TYPE" "ZWINT WILD-TYPE" 
     TCGA-73-4670      TCGA-73-4675      TCGA-73-4676      TCGA-73-4677 
"ZWINT WILD-TYPE" "ZWINT WILD-TYPE" "ZWINT WILD-TYPE" "ZWINT WILD-TYPE" 
     TCGA-91-6828      TCGA-91-6829      TCGA-91-6831      TCGA-91-6835 
"ZWINT WILD-TYPE" "ZWINT WILD-TYPE" "ZWINT WILD-TYPE" "ZWINT WILD-TYPE" 
     TCGA-91-6836 
"ZWINT WILD-TYPE" 
     TCGA-05-4249      TCGA-05-4250      TCGA-05-4382      TCGA-05-4384 
"ZWINT WILD-TYPE" "ZWINT WILD-TYPE" "ZWINT WILD-TYPE" "ZWINT WILD-TYPE" 
     TCGA-05-4390      TCGA-05-4396      TCGA-05-4397      TCGA-05-4398 
"ZWINT WILD-TYPE" "ZWINT WILD-TYPE"   "ZWINT MUTATED" "ZWINT WILD-TYPE" 
     TCGA-05-4402      TCGA-05-4405      TCGA-05-4415      TCGA-05-4417 
"ZWINT WILD-TYPE" "ZWINT WILD-TYPE" "ZWINT WILD-TYPE" "ZWINT WILD-TYPE" 
     TCGA-05-4418      TCGA-05-4420      TCGA-05-4424      TCGA-05-4426 
"ZWINT WILD-TYPE" "ZWINT WILD-TYPE" "ZWINT WILD-TYPE" "ZWINT WILD-TYPE" 
     TCGA-05-4427      TCGA-05-4430      TCGA-05-4432      TCGA-05-4433 
  "ZWINT MUTATED" "ZWINT WILD-TYPE" "ZWINT WILD-TYPE" "ZWINT WILD-TYPE" 
     TCGA-05-4434      TCGA-05-5420      TCGA-05-5423      TCGA-05-5425 
"ZWINT WILD-TYPE" "ZWINT WILD-TYPE" "ZWINT WILD-TYPE" "ZWINT WILD-TYPE" 
     TCGA-05-5429      TCGA-05-5715      TCGA-35-3615      TCGA-35-4122 
"ZWINT WILD-TYPE" "ZWINT WILD-TYPE" "ZWINT WILD-TYPE" "ZWINT WILD-TYPE" 
     TCGA-35-4123      TCGA-35-5375      TCGA-38-4625      TCGA-38-4626 
"ZWINT WILD-TYPE" "ZWINT WILD-TYPE" "ZWINT WILD-TYPE" "ZWINT WILD-TYPE" 
     TCGA-38-4627      TCGA-38-4628      TCGA-38-4629      TCGA-38-4630 
"ZWINT WILD-TYPE" "ZWINT WILD-TYPE" "ZWINT WILD-TYPE" "ZWINT WILD-TYPE" 
     TCGA-38-4631      TCGA-38-4632      TCGA-38-6178      TCGA-44-2655 
"ZWINT WILD-TYPE" "ZWINT WILD-TYPE" "ZWINT WILD-TYPE" "ZWINT WILD-TYPE" 
     TCGA-44-2656      TCGA-44-2657      TCGA-44-2659      TCGA-44-2661 
"ZWINT WILD-TYPE" "ZWINT WILD-TYPE" "ZWINT WILD-TYPE" "ZWINT WILD-TYPE" 
     TCGA-44-2662      TCGA-44-2665      TCGA-44-2666      TCGA-44-2668 
"ZWINT WILD-TYPE" "ZWINT WILD-TYPE" "ZWINT WILD-TYPE" "ZWINT WILD-TYPE" 
     TCGA-44-3396      TCGA-44-3398      TCGA-44-3918      TCGA-44-3919 
"ZWINT WILD-TYPE" "ZWINT WILD-TYPE" "ZWINT WILD-TYPE" "ZWINT WILD-TYPE" 
     TCGA-44-4112      TCGA-44-5643      TCGA-44-5645      TCGA-44-6144 
"ZWINT WILD-TYPE" "ZWINT WILD-TYPE" "ZWINT WILD-TYPE" "ZWINT WILD-TYPE" 
     TCGA-44-6145      TCGA-44-6146      TCGA-44-6147      TCGA-44-6148 
"ZWINT WILD-TYPE" "ZWINT WILD-TYPE" "ZWINT WILD-TYPE" "ZWINT WILD-TYPE" 
     TCGA-44-6774      TCGA-44-6775      TCGA-44-6776      TCGA-44-6777 
"ZWINT WILD-TYPE" "ZWINT WILD-TYPE" "ZWINT WILD-TYPE" "ZWINT WILD-TYPE" 
     TCGA-44-6778      TCGA-44-6779      TCGA-49-4486      TCGA-49-4487 
"ZWINT WILD-TYPE" "ZWINT WILD-TYPE" "ZWINT WILD-TYPE" "ZWINT WILD-TYPE" 
     TCGA-49-4488      TCGA-49-4490      TCGA-49-4494      TCGA-49-4501 
"ZWINT WILD-TYPE" "ZWINT WILD-TYPE" "ZWINT WILD-TYPE" "ZWINT WILD-TYPE" 
     TCGA-49-4505      TCGA-49-4506      TCGA-49-4507      TCGA-49-4510 
"ZWINT WILD-TYPE"   "ZWINT MUTATED" "ZWINT WILD-TYPE" "ZWINT WILD-TYPE" 
     TCGA-49-4512      TCGA-49-4514      TCGA-49-6742      TCGA-49-6743 
"ZWINT WILD-TYPE" "ZWINT WILD-TYPE" "ZWINT WILD-TYPE" "ZWINT WILD-TYPE" 
     TCGA-49-6744      TCGA-49-6745      TCGA-50-5044      TCGA-50-5045 
  "ZWINT MUTATED" "ZWINT WILD-TYPE" "ZWINT WILD-TYPE" "ZWINT WILD-TYPE" 
     TCGA-50-5049      TCGA-50-5051      TCGA-50-5055      TCGA-50-5066 
"ZWINT WILD-TYPE" "ZWINT WILD-TYPE" "ZWINT WILD-TYPE" "ZWINT WILD-TYPE" 
     TCGA-50-5068      TCGA-50-5072      TCGA-50-5930      TCGA-50-5931 
"ZWINT WILD-TYPE" "ZWINT WILD-TYPE" "ZWINT WILD-TYPE" "ZWINT WILD-TYPE" 
     TCGA-50-5932      TCGA-50-5933      TCGA-50-5935      TCGA-50-5936 
"ZWINT WILD-TYPE" "ZWINT WILD-TYPE" "ZWINT WILD-TYPE" "ZWINT WILD-TYPE" 
     TCGA-50-5939      TCGA-50-5941      TCGA-50-5942      TCGA-50-5944 
"ZWINT WILD-TYPE" "ZWINT WILD-TYPE" "ZWINT WILD-TYPE" "ZWINT WILD-TYPE" 
     TCGA-50-5946      TCGA-50-6590      TCGA-50-6591      TCGA-50-6592 
"ZWINT WILD-TYPE" "ZWINT WILD-TYPE" "ZWINT WILD-TYPE" "ZWINT WILD-TYPE" 
     TCGA-50-6593      TCGA-50-6594      TCGA-50-6595      TCGA-50-6597 
  "ZWINT MUTATED" "ZWINT WILD-TYPE" "ZWINT WILD-TYPE" "ZWINT WILD-TYPE" 
     TCGA-55-1592      TCGA-55-1594      TCGA-55-1595      TCGA-55-1596 
"ZWINT WILD-TYPE" "ZWINT WILD-TYPE" "ZWINT WILD-TYPE" "ZWINT WILD-TYPE" 
     TCGA-55-5899      TCGA-55-6543      TCGA-55-6642      TCGA-55-6712 
"ZWINT WILD-TYPE" "ZWINT WILD-TYPE" "ZWINT WILD-TYPE" "ZWINT WILD-TYPE" 
     TCGA-64-1676      TCGA-64-1677      TCGA-64-1678      TCGA-64-1680 
"ZWINT WILD-TYPE" "ZWINT WILD-TYPE" "ZWINT WILD-TYPE" "ZWINT WILD-TYPE" 
     TCGA-64-5774      TCGA-64-5775      TCGA-64-5778      TCGA-64-5779 
"ZWINT WILD-TYPE" "ZWINT WILD-TYPE" "ZWINT WILD-TYPE" "ZWINT WILD-TYPE" 
     TCGA-64-5781      TCGA-64-5815      TCGA-67-3770      TCGA-67-3771 
"ZWINT WILD-TYPE" "ZWINT WILD-TYPE" "ZWINT WILD-TYPE" "ZWINT WILD-TYPE" 
     TCGA-67-3772      TCGA-67-3773      TCGA-67-3774      TCGA-67-6215 
"ZWINT WILD-TYPE" "ZWINT WILD-TYPE" "ZWINT WILD-TYPE" "ZWINT WILD-TYPE" 
     TCGA-67-6216      TCGA-67-6217      TCGA-71-6725      TCGA-73-4658 
"ZWINT WILD-TYPE" "ZWINT WILD-TYPE" "ZWINT WILD-TYPE" "ZWINT WILD-TYPE" 
     TCGA-73-4659      TCGA-73-4662      TCGA-73-4666      TCGA-73-4668 
"ZWINT WILD-TYPE" "ZWINT WILD-TYPE" "ZWINT WILD-TYPE" "ZWINT WILD-TYPE" 
     TCGA-73-4670      TCGA-73-4675      TCGA-73-4676      TCGA-73-4677 
"ZWINT WILD-TYPE" "ZWINT WILD-TYPE" "ZWINT WILD-TYPE" "ZWINT WILD-TYPE" 
     TCGA-91-6828      TCGA-91-6829      TCGA-91-6831      TCGA-91-6835 
"ZWINT WILD-TYPE" "ZWINT WILD-TYPE" "ZWINT WILD-TYPE" "ZWINT WILD-TYPE" 
     TCGA-91-6836 
"ZWINT WILD-TYPE" 
[1] "hr=" "2"  
D233V2, continuous
D233V3, binary
[1] "tbl2"
                 cls
clus              [,1] [,2]
  ZWINT MUTATED      4    2
  ZWINT WILD-TYPE   89   77
        clus
vv       ZWINT MUTATED ZWINT WILD-TYPE
  FEMALE             4              89
  MALE               2              77
D233V4, continuous
D233V5, multiclass
D233V6, multiclass
    clus
vv   ZWINT MUTATED ZWINT WILD-TYPE
  T1             2              39
  T2             4             104
  T3             0              14
  T4             0               8
D233V7, multiclass
       clus
vv      ZWINT MUTATED ZWINT WILD-TYPE
  N0                0              95
  N1                5              32
  N2+N3             1              34
D233V8, multiclass
    clus
vv   ZWINT MUTATED ZWINT WILD-TYPE
  M0             5             132
  M1             0               9
  MX             1              21
D233V9, multiclass
     clus
vv    ZWINT MUTATED ZWINT WILD-TYPE
  I               0              88
  II              5              28
  III             1              38
  IV              0               9
D233V10, binary
[1] "tbl2"
                 cls
clus              [,1] [,2]
  ZWINT MUTATED      0    6
  ZWINT WILD-TYPE   16  150
     clus
vv    ZWINT MUTATED ZWINT WILD-TYPE
  NO              0              16
  YES             6             150
D233V11, continuous
D233V12, continuous
[1] "Remove cluster labels:" "ZWINT MUTATED"         
clus
  ZWINT MUTATED ZWINT WILD-TYPE 
              2              80 
     TCGA-05-4384      TCGA-05-4390      TCGA-05-4396      TCGA-05-4403 
"ZWINT WILD-TYPE" "ZWINT WILD-TYPE" "ZWINT WILD-TYPE" "ZWINT WILD-TYPE" 
     TCGA-05-4405      TCGA-05-4410      TCGA-05-4415      TCGA-05-4417 
"ZWINT WILD-TYPE" "ZWINT WILD-TYPE" "ZWINT WILD-TYPE" "ZWINT WILD-TYPE" 
     TCGA-05-4424      TCGA-05-4433      TCGA-05-5420      TCGA-05-5423 
"ZWINT WILD-TYPE" "ZWINT WILD-TYPE" "ZWINT WILD-TYPE" "ZWINT WILD-TYPE" 
     TCGA-05-5425      TCGA-35-4122      TCGA-35-4123      TCGA-35-5375 
"ZWINT WILD-TYPE" "ZWINT WILD-TYPE" "ZWINT WILD-TYPE" "ZWINT WILD-TYPE" 
     TCGA-38-4629      TCGA-38-4632      TCGA-44-2655      TCGA-44-2656 
"ZWINT WILD-TYPE" "ZWINT WILD-TYPE" "ZWINT WILD-TYPE" "ZWINT WILD-TYPE" 
     TCGA-44-2657      TCGA-44-2659      TCGA-44-2662      TCGA-44-2668 
"ZWINT WILD-TYPE" "ZWINT WILD-TYPE" "ZWINT WILD-TYPE" "ZWINT WILD-TYPE" 
     TCGA-44-3398      TCGA-44-3918      TCGA-44-4112      TCGA-44-5645 
"ZWINT WILD-TYPE" "ZWINT WILD-TYPE" "ZWINT WILD-TYPE" "ZWINT WILD-TYPE" 
     TCGA-44-6145      TCGA-44-6146      TCGA-44-6147      TCGA-44-6148 
"ZWINT WILD-TYPE" "ZWINT WILD-TYPE" "ZWINT WILD-TYPE" "ZWINT WILD-TYPE" 
     TCGA-44-6775      TCGA-44-6776      TCGA-44-6777      TCGA-44-6778 
"ZWINT WILD-TYPE" "ZWINT WILD-TYPE" "ZWINT WILD-TYPE" "ZWINT WILD-TYPE" 
     TCGA-44-6779      TCGA-49-4486      TCGA-49-4488      TCGA-49-4494 
"ZWINT WILD-TYPE" "ZWINT WILD-TYPE" "ZWINT WILD-TYPE" "ZWINT WILD-TYPE" 
     TCGA-49-4505      TCGA-49-4507      TCGA-50-5051      TCGA-50-5072 
"ZWINT WILD-TYPE" "ZWINT WILD-TYPE" "ZWINT WILD-TYPE" "ZWINT WILD-TYPE" 
     TCGA-50-5939      TCGA-50-5942      TCGA-50-5946      TCGA-50-6590 
"ZWINT WILD-TYPE" "ZWINT WILD-TYPE" "ZWINT WILD-TYPE" "ZWINT WILD-TYPE" 
     TCGA-50-6594      TCGA-50-6595      TCGA-55-1592      TCGA-55-1595 
"ZWINT WILD-TYPE" "ZWINT WILD-TYPE" "ZWINT WILD-TYPE" "ZWINT WILD-TYPE" 
     TCGA-55-6543      TCGA-55-6712      TCGA-64-1678      TCGA-64-1680 
"ZWINT WILD-TYPE" "ZWINT WILD-TYPE" "ZWINT WILD-TYPE" "ZWINT WILD-TYPE" 
     TCGA-64-5774      TCGA-64-5778      TCGA-64-5779      TCGA-64-5781 
"ZWINT WILD-TYPE" "ZWINT WILD-TYPE" "ZWINT WILD-TYPE" "ZWINT WILD-TYPE" 
     TCGA-64-5815      TCGA-67-6217      TCGA-73-4659      TCGA-73-4662 
"ZWINT WILD-TYPE" "ZWINT WILD-TYPE" "ZWINT WILD-TYPE" "ZWINT WILD-TYPE" 
     TCGA-73-4666      TCGA-73-4668      TCGA-73-4670      TCGA-73-4675 
"ZWINT WILD-TYPE" "ZWINT WILD-TYPE" "ZWINT WILD-TYPE" "ZWINT WILD-TYPE" 
     TCGA-73-4676      TCGA-73-4677      TCGA-75-5122      TCGA-75-5125 
"ZWINT WILD-TYPE" "ZWINT WILD-TYPE" "ZWINT WILD-TYPE" "ZWINT WILD-TYPE" 
     TCGA-75-5126      TCGA-75-5146      TCGA-75-6206      TCGA-75-6207 
"ZWINT WILD-TYPE" "ZWINT WILD-TYPE" "ZWINT WILD-TYPE" "ZWINT WILD-TYPE" 
     TCGA-80-5611      TCGA-91-6828      TCGA-91-6829      TCGA-91-6835 
"ZWINT WILD-TYPE" "ZWINT WILD-TYPE" "ZWINT WILD-TYPE" "ZWINT WILD-TYPE" 
D233V13, multiclass
                                             clus
vv                                            ZWINT MUTATED ZWINT WILD-TYPE
  CURRENT REFORMED SMOKER FOR < OR = 15 YEARS             3              59
  CURRENT REFORMED SMOKER FOR > 15 YEARS                  1              45
  CURRENT SMOKER                                          2              26
  LIFELONG NON-SMOKER                                     0              24
D233V14, continuous
[1] "Remove cluster labels:" "ZWINT MUTATED"         
clus
  ZWINT MUTATED ZWINT WILD-TYPE 
              2              66 
     TCGA-05-4384      TCGA-05-4390      TCGA-05-4396      TCGA-05-4405 
"ZWINT WILD-TYPE" "ZWINT WILD-TYPE" "ZWINT WILD-TYPE" "ZWINT WILD-TYPE" 
     TCGA-05-4410      TCGA-05-4415      TCGA-05-4417      TCGA-05-4424 
"ZWINT WILD-TYPE" "ZWINT WILD-TYPE" "ZWINT WILD-TYPE" "ZWINT WILD-TYPE" 
     TCGA-05-4433      TCGA-05-5420      TCGA-05-5423      TCGA-05-5425 
"ZWINT WILD-TYPE" "ZWINT WILD-TYPE" "ZWINT WILD-TYPE" "ZWINT WILD-TYPE" 
     TCGA-35-4122      TCGA-35-4123      TCGA-35-5375      TCGA-38-4625 
"ZWINT WILD-TYPE" "ZWINT WILD-TYPE" "ZWINT WILD-TYPE" "ZWINT WILD-TYPE" 
     TCGA-38-4626      TCGA-44-2655      TCGA-44-2656      TCGA-44-2657 
"ZWINT WILD-TYPE" "ZWINT WILD-TYPE" "ZWINT WILD-TYPE" "ZWINT WILD-TYPE" 
     TCGA-44-2659      TCGA-44-2662      TCGA-44-2666      TCGA-44-2668 
"ZWINT WILD-TYPE" "ZWINT WILD-TYPE" "ZWINT WILD-TYPE" "ZWINT WILD-TYPE" 
     TCGA-44-3396      TCGA-44-3398      TCGA-44-3918      TCGA-44-4112 
"ZWINT WILD-TYPE" "ZWINT WILD-TYPE" "ZWINT WILD-TYPE" "ZWINT WILD-TYPE" 
     TCGA-44-5645      TCGA-44-6144      TCGA-44-6145      TCGA-44-6147 
"ZWINT WILD-TYPE" "ZWINT WILD-TYPE" "ZWINT WILD-TYPE" "ZWINT WILD-TYPE" 
     TCGA-44-6148      TCGA-44-6774      TCGA-44-6775      TCGA-44-6776 
"ZWINT WILD-TYPE" "ZWINT WILD-TYPE" "ZWINT WILD-TYPE" "ZWINT WILD-TYPE" 
     TCGA-44-6777      TCGA-44-6778      TCGA-44-6779      TCGA-49-4486 
"ZWINT WILD-TYPE" "ZWINT WILD-TYPE" "ZWINT WILD-TYPE" "ZWINT WILD-TYPE" 
     TCGA-49-4494      TCGA-49-4505      TCGA-55-1592      TCGA-55-1594 
"ZWINT WILD-TYPE" "ZWINT WILD-TYPE" "ZWINT WILD-TYPE" "ZWINT WILD-TYPE" 
     TCGA-55-1595      TCGA-55-1596      TCGA-55-5899      TCGA-55-6642 
"ZWINT WILD-TYPE" "ZWINT WILD-TYPE" "ZWINT WILD-TYPE" "ZWINT WILD-TYPE" 
     TCGA-55-6712      TCGA-64-1677      TCGA-64-1678      TCGA-64-1680 
"ZWINT WILD-TYPE" "ZWINT WILD-TYPE" "ZWINT WILD-TYPE" "ZWINT WILD-TYPE" 
     TCGA-64-5774      TCGA-64-5775      TCGA-64-5778      TCGA-64-5779 
"ZWINT WILD-TYPE" "ZWINT WILD-TYPE" "ZWINT WILD-TYPE" "ZWINT WILD-TYPE" 
     TCGA-64-5781      TCGA-73-4659      TCGA-73-4662      TCGA-73-4666 
"ZWINT WILD-TYPE" "ZWINT WILD-TYPE" "ZWINT WILD-TYPE" "ZWINT WILD-TYPE" 
     TCGA-73-4668      TCGA-73-4670      TCGA-73-4675      TCGA-73-4676 
"ZWINT WILD-TYPE" "ZWINT WILD-TYPE" "ZWINT WILD-TYPE" "ZWINT WILD-TYPE" 
     TCGA-91-6829      TCGA-91-6836 
"ZWINT WILD-TYPE" "ZWINT WILD-TYPE" 

Clustering(234) Variable = CD33 MUTATION ANALYSIS
D234V1, survival
                sevent
clus2             0  1
  CD33 MUTATED    7  0
  CD33 WILD-TYPE 92 50
  CD33 MUTATED CD33 WILD-TYPE 
             7            142 
  CD33 MUTATED CD33 WILD-TYPE 
             0             50 
$`CD33 MUTATED`
TCGA-05-4398 TCGA-44-3398 TCGA-44-3918 TCGA-49-6743 TCGA-50-5049 TCGA-64-5815 
       47.05         8.32         6.44        12.13        48.82         7.33 
TCGA-67-3771 
        1.97 

$`CD33 WILD-TYPE`
TCGA-05-4249 TCGA-05-4250 TCGA-05-4382 TCGA-05-4384 TCGA-05-4390 TCGA-05-4396 
       38.07         3.98        19.92        14.01        37.02         9.96 
TCGA-05-4397 TCGA-05-4402 TCGA-05-4405 TCGA-05-4415 TCGA-05-4417 TCGA-05-4418 
       24.03         8.02        20.05         2.96        14.93         8.98 
TCGA-05-4420 TCGA-05-4424 TCGA-05-4426 TCGA-05-4427 TCGA-05-4430 TCGA-05-4432 
       29.95        30.02        26.01        26.01        25.02        25.02 
TCGA-05-4433 TCGA-05-4434 TCGA-05-5420 TCGA-05-5423 TCGA-05-5425 TCGA-05-5429 
       24.00        15.02         1.02         4.96         2.96         0.99 
TCGA-05-5715 TCGA-35-3615 TCGA-35-4122 TCGA-35-4123 TCGA-35-5375 TCGA-38-4625 
        2.04         0.46         7.36         5.95         8.68        47.61 
TCGA-38-4626 TCGA-38-4627 TCGA-38-4628 TCGA-38-4629 TCGA-38-4630 TCGA-38-4631 
       85.32        37.71        49.02        28.37        35.28        11.64 
TCGA-38-4632 TCGA-38-6178 TCGA-44-2655 TCGA-44-2656 TCGA-44-2657 TCGA-44-2659 
       44.61         5.19        18.87        19.10        13.15        17.39 
TCGA-44-2661 TCGA-44-2662 TCGA-44-2665 TCGA-44-2666 TCGA-44-2668 TCGA-44-3396 
        3.39        15.78        13.15         3.19         8.09        10.22 
TCGA-44-3919 TCGA-44-4112 TCGA-44-5643 TCGA-44-5645 TCGA-44-6144 TCGA-44-6145 
        6.21         4.60         3.48         6.84         0.30         3.35 
TCGA-44-6146 TCGA-44-6147 TCGA-44-6148 TCGA-44-6774 TCGA-44-6775 TCGA-44-6776 
        9.93         7.76         3.12         5.42         2.70        63.72 
TCGA-44-6777 TCGA-44-6778 TCGA-44-6779 TCGA-49-4486 TCGA-49-4487 TCGA-49-4488 
       32.45        36.49        16.41        76.21        28.11        28.57 
TCGA-49-4490 TCGA-49-4494 TCGA-49-4501 TCGA-49-4505 TCGA-49-4506 TCGA-49-4507 
       12.66        35.54        46.72        14.07        32.84         8.81 
TCGA-49-4510 TCGA-49-4512 TCGA-49-4514 TCGA-49-6742 TCGA-49-6744 TCGA-49-6745 
       29.46        29.75        43.20        15.02        12.99         4.93 
TCGA-50-5044 TCGA-50-5045 TCGA-50-5051 TCGA-50-5055 TCGA-50-5066 TCGA-50-5068 
       20.48        71.47        14.96        25.81         9.76        49.28 
TCGA-50-5072 TCGA-50-5930 TCGA-50-5931 TCGA-50-5932 TCGA-50-5933 TCGA-50-5935 
        8.05         9.27         8.78        35.87        77.88        21.47 
TCGA-50-5936 TCGA-50-5939 TCGA-50-5941 TCGA-50-5942 TCGA-50-5944 TCGA-50-5946 
        8.45        15.12         9.37         4.44        12.26        11.47 
TCGA-50-6590 TCGA-50-6591 TCGA-50-6592 TCGA-50-6593 TCGA-50-6594 TCGA-50-6595 
       42.31         3.88        25.51        11.05        12.16         6.21 
TCGA-50-6597 TCGA-55-1592 TCGA-55-1594 TCGA-55-1595 TCGA-55-1596 TCGA-55-5899 
       33.37        23.05        38.73        48.62        45.17         2.86 
TCGA-55-6543 TCGA-55-6642 TCGA-55-6712 TCGA-64-1676 TCGA-64-1677 TCGA-64-1678 
        0.07        32.61         0.79        56.81        20.65        39.09 
TCGA-64-1680 TCGA-64-5774 TCGA-64-5775 TCGA-64-5778 TCGA-64-5779 TCGA-64-5781 
       37.02        83.84         0.10        30.44        16.67        39.52 
TCGA-67-3770 TCGA-67-3772 TCGA-67-3773 TCGA-67-3774 TCGA-67-6215 TCGA-67-6216 
        0.99         0.59         2.04         0.59         0.89         0.69 
TCGA-67-6217 TCGA-71-6725 TCGA-73-4658 TCGA-73-4659 TCGA-73-4662 TCGA-73-4666 
       13.87         2.01        52.57        23.38        29.95        20.28 
TCGA-73-4668 TCGA-73-4670 TCGA-73-4675 TCGA-73-4676 TCGA-73-4677 TCGA-91-6828 
       15.35         0.46         1.32         4.01         1.25         1.22 
TCGA-91-6829 TCGA-91-6831 TCGA-91-6835 TCGA-91-6836 
       41.33         1.28         1.15         0.36 

  CD33 MUTATED CD33 WILD-TYPE 
          1.97           0.07 
  CD33 MUTATED CD33 WILD-TYPE 
         48.82          85.32 
  CD33 MUTATED CD33 WILD-TYPE 
          8.32          14.04 
[1] "2.0 - 48.8 (8.3)"  "0.1 - 85.3 (14.0)"
    TCGA-05-4249     TCGA-05-4250     TCGA-05-4382     TCGA-05-4384 
"CD33 WILD-TYPE" "CD33 WILD-TYPE" "CD33 WILD-TYPE" "CD33 WILD-TYPE" 
    TCGA-05-4390     TCGA-05-4396     TCGA-05-4397     TCGA-05-4398 
"CD33 WILD-TYPE" "CD33 WILD-TYPE" "CD33 WILD-TYPE"   "CD33 MUTATED" 
    TCGA-05-4402     TCGA-05-4405     TCGA-05-4415     TCGA-05-4417 
"CD33 WILD-TYPE" "CD33 WILD-TYPE" "CD33 WILD-TYPE" "CD33 WILD-TYPE" 
    TCGA-05-4418     TCGA-05-4420     TCGA-05-4424     TCGA-05-4426 
"CD33 WILD-TYPE" "CD33 WILD-TYPE" "CD33 WILD-TYPE" "CD33 WILD-TYPE" 
    TCGA-05-4427     TCGA-05-4430     TCGA-05-4432     TCGA-05-4433 
"CD33 WILD-TYPE" "CD33 WILD-TYPE" "CD33 WILD-TYPE" "CD33 WILD-TYPE" 
    TCGA-05-4434     TCGA-05-5420     TCGA-05-5423     TCGA-05-5425 
"CD33 WILD-TYPE" "CD33 WILD-TYPE" "CD33 WILD-TYPE" "CD33 WILD-TYPE" 
    TCGA-05-5429     TCGA-05-5715     TCGA-35-3615     TCGA-35-4122 
"CD33 WILD-TYPE" "CD33 WILD-TYPE" "CD33 WILD-TYPE" "CD33 WILD-TYPE" 
    TCGA-35-4123     TCGA-35-5375     TCGA-38-4625     TCGA-38-4626 
"CD33 WILD-TYPE" "CD33 WILD-TYPE" "CD33 WILD-TYPE" "CD33 WILD-TYPE" 
    TCGA-38-4627     TCGA-38-4628     TCGA-38-4629     TCGA-38-4630 
"CD33 WILD-TYPE" "CD33 WILD-TYPE" "CD33 WILD-TYPE" "CD33 WILD-TYPE" 
    TCGA-38-4631     TCGA-38-4632     TCGA-38-6178     TCGA-44-2655 
"CD33 WILD-TYPE" "CD33 WILD-TYPE" "CD33 WILD-TYPE" "CD33 WILD-TYPE" 
    TCGA-44-2656     TCGA-44-2657     TCGA-44-2659     TCGA-44-2661 
"CD33 WILD-TYPE" "CD33 WILD-TYPE" "CD33 WILD-TYPE" "CD33 WILD-TYPE" 
    TCGA-44-2662     TCGA-44-2665     TCGA-44-2666     TCGA-44-2668 
"CD33 WILD-TYPE" "CD33 WILD-TYPE" "CD33 WILD-TYPE" "CD33 WILD-TYPE" 
    TCGA-44-3396     TCGA-44-3398     TCGA-44-3918     TCGA-44-3919 
"CD33 WILD-TYPE"   "CD33 MUTATED"   "CD33 MUTATED" "CD33 WILD-TYPE" 
    TCGA-44-4112     TCGA-44-5643     TCGA-44-5645     TCGA-44-6144 
"CD33 WILD-TYPE" "CD33 WILD-TYPE" "CD33 WILD-TYPE" "CD33 WILD-TYPE" 
    TCGA-44-6145     TCGA-44-6146     TCGA-44-6147     TCGA-44-6148 
"CD33 WILD-TYPE" "CD33 WILD-TYPE" "CD33 WILD-TYPE" "CD33 WILD-TYPE" 
    TCGA-44-6774     TCGA-44-6775     TCGA-44-6776     TCGA-44-6777 
"CD33 WILD-TYPE" "CD33 WILD-TYPE" "CD33 WILD-TYPE" "CD33 WILD-TYPE" 
    TCGA-44-6778     TCGA-44-6779     TCGA-49-4486     TCGA-49-4487 
"CD33 WILD-TYPE" "CD33 WILD-TYPE" "CD33 WILD-TYPE" "CD33 WILD-TYPE" 
    TCGA-49-4488     TCGA-49-4490     TCGA-49-4494     TCGA-49-4501 
"CD33 WILD-TYPE" "CD33 WILD-TYPE" "CD33 WILD-TYPE" "CD33 WILD-TYPE" 
    TCGA-49-4505     TCGA-49-4506     TCGA-49-4507     TCGA-49-4510 
"CD33 WILD-TYPE" "CD33 WILD-TYPE" "CD33 WILD-TYPE" "CD33 WILD-TYPE" 
    TCGA-49-4512     TCGA-49-4514     TCGA-49-6742     TCGA-49-6743 
"CD33 WILD-TYPE" "CD33 WILD-TYPE" "CD33 WILD-TYPE"   "CD33 MUTATED" 
    TCGA-49-6744     TCGA-49-6745     TCGA-50-5044     TCGA-50-5045 
"CD33 WILD-TYPE" "CD33 WILD-TYPE" "CD33 WILD-TYPE" "CD33 WILD-TYPE" 
    TCGA-50-5049     TCGA-50-5051     TCGA-50-5055     TCGA-50-5066 
  "CD33 MUTATED" "CD33 WILD-TYPE" "CD33 WILD-TYPE" "CD33 WILD-TYPE" 
    TCGA-50-5068     TCGA-50-5072     TCGA-50-5930     TCGA-50-5931 
"CD33 WILD-TYPE" "CD33 WILD-TYPE" "CD33 WILD-TYPE" "CD33 WILD-TYPE" 
    TCGA-50-5932     TCGA-50-5933     TCGA-50-5935     TCGA-50-5936 
"CD33 WILD-TYPE" "CD33 WILD-TYPE" "CD33 WILD-TYPE" "CD33 WILD-TYPE" 
    TCGA-50-5939     TCGA-50-5941     TCGA-50-5942     TCGA-50-5944 
"CD33 WILD-TYPE" "CD33 WILD-TYPE" "CD33 WILD-TYPE" "CD33 WILD-TYPE" 
    TCGA-50-5946     TCGA-50-6590     TCGA-50-6591     TCGA-50-6592 
"CD33 WILD-TYPE" "CD33 WILD-TYPE" "CD33 WILD-TYPE" "CD33 WILD-TYPE" 
    TCGA-50-6593     TCGA-50-6594     TCGA-50-6595     TCGA-50-6597 
"CD33 WILD-TYPE" "CD33 WILD-TYPE" "CD33 WILD-TYPE" "CD33 WILD-TYPE" 
    TCGA-55-1592     TCGA-55-1594     TCGA-55-1595     TCGA-55-1596 
"CD33 WILD-TYPE" "CD33 WILD-TYPE" "CD33 WILD-TYPE" "CD33 WILD-TYPE" 
    TCGA-55-5899     TCGA-55-6543     TCGA-55-6642     TCGA-55-6712 
"CD33 WILD-TYPE" "CD33 WILD-TYPE" "CD33 WILD-TYPE" "CD33 WILD-TYPE" 
    TCGA-64-1676     TCGA-64-1677     TCGA-64-1678     TCGA-64-1680 
"CD33 WILD-TYPE" "CD33 WILD-TYPE" "CD33 WILD-TYPE" "CD33 WILD-TYPE" 
    TCGA-64-5774     TCGA-64-5775     TCGA-64-5778     TCGA-64-5779 
"CD33 WILD-TYPE" "CD33 WILD-TYPE" "CD33 WILD-TYPE" "CD33 WILD-TYPE" 
    TCGA-64-5781     TCGA-64-5815     TCGA-67-3770     TCGA-67-3771 
"CD33 WILD-TYPE"   "CD33 MUTATED" "CD33 WILD-TYPE"   "CD33 MUTATED" 
    TCGA-67-3772     TCGA-67-3773     TCGA-67-3774     TCGA-67-6215 
"CD33 WILD-TYPE" "CD33 WILD-TYPE" "CD33 WILD-TYPE" "CD33 WILD-TYPE" 
    TCGA-67-6216     TCGA-67-6217     TCGA-71-6725     TCGA-73-4658 
"CD33 WILD-TYPE" "CD33 WILD-TYPE" "CD33 WILD-TYPE" "CD33 WILD-TYPE" 
    TCGA-73-4659     TCGA-73-4662     TCGA-73-4666     TCGA-73-4668 
"CD33 WILD-TYPE" "CD33 WILD-TYPE" "CD33 WILD-TYPE" "CD33 WILD-TYPE" 
    TCGA-73-4670     TCGA-73-4675     TCGA-73-4676     TCGA-73-4677 
"CD33 WILD-TYPE" "CD33 WILD-TYPE" "CD33 WILD-TYPE" "CD33 WILD-TYPE" 
    TCGA-91-6828     TCGA-91-6829     TCGA-91-6831     TCGA-91-6835 
"CD33 WILD-TYPE" "CD33 WILD-TYPE" "CD33 WILD-TYPE" "CD33 WILD-TYPE" 
    TCGA-91-6836 
"CD33 WILD-TYPE" 
    TCGA-05-4249     TCGA-05-4250     TCGA-05-4382     TCGA-05-4384 
"CD33 WILD-TYPE" "CD33 WILD-TYPE" "CD33 WILD-TYPE" "CD33 WILD-TYPE" 
    TCGA-05-4390     TCGA-05-4396     TCGA-05-4397     TCGA-05-4398 
"CD33 WILD-TYPE" "CD33 WILD-TYPE" "CD33 WILD-TYPE"   "CD33 MUTATED" 
    TCGA-05-4402     TCGA-05-4405     TCGA-05-4415     TCGA-05-4417 
"CD33 WILD-TYPE" "CD33 WILD-TYPE" "CD33 WILD-TYPE" "CD33 WILD-TYPE" 
    TCGA-05-4418     TCGA-05-4420     TCGA-05-4424     TCGA-05-4426 
"CD33 WILD-TYPE" "CD33 WILD-TYPE" "CD33 WILD-TYPE" "CD33 WILD-TYPE" 
    TCGA-05-4427     TCGA-05-4430     TCGA-05-4432     TCGA-05-4433 
"CD33 WILD-TYPE" "CD33 WILD-TYPE" "CD33 WILD-TYPE" "CD33 WILD-TYPE" 
    TCGA-05-4434     TCGA-05-5420     TCGA-05-5423     TCGA-05-5425 
"CD33 WILD-TYPE" "CD33 WILD-TYPE" "CD33 WILD-TYPE" "CD33 WILD-TYPE" 
    TCGA-05-5429     TCGA-05-5715     TCGA-35-3615     TCGA-35-4122 
"CD33 WILD-TYPE" "CD33 WILD-TYPE" "CD33 WILD-TYPE" "CD33 WILD-TYPE" 
    TCGA-35-4123     TCGA-35-5375     TCGA-38-4625     TCGA-38-4626 
"CD33 WILD-TYPE" "CD33 WILD-TYPE" "CD33 WILD-TYPE" "CD33 WILD-TYPE" 
    TCGA-38-4627     TCGA-38-4628     TCGA-38-4629     TCGA-38-4630 
"CD33 WILD-TYPE" "CD33 WILD-TYPE" "CD33 WILD-TYPE" "CD33 WILD-TYPE" 
    TCGA-38-4631     TCGA-38-4632     TCGA-38-6178     TCGA-44-2655 
"CD33 WILD-TYPE" "CD33 WILD-TYPE" "CD33 WILD-TYPE" "CD33 WILD-TYPE" 
    TCGA-44-2656     TCGA-44-2657     TCGA-44-2659     TCGA-44-2661 
"CD33 WILD-TYPE" "CD33 WILD-TYPE" "CD33 WILD-TYPE" "CD33 WILD-TYPE" 
    TCGA-44-2662     TCGA-44-2665     TCGA-44-2666     TCGA-44-2668 
"CD33 WILD-TYPE" "CD33 WILD-TYPE" "CD33 WILD-TYPE" "CD33 WILD-TYPE" 
    TCGA-44-3396     TCGA-44-3398     TCGA-44-3918     TCGA-44-3919 
"CD33 WILD-TYPE"   "CD33 MUTATED"   "CD33 MUTATED" "CD33 WILD-TYPE" 
    TCGA-44-4112     TCGA-44-5643     TCGA-44-5645     TCGA-44-6144 
"CD33 WILD-TYPE" "CD33 WILD-TYPE" "CD33 WILD-TYPE" "CD33 WILD-TYPE" 
    TCGA-44-6145     TCGA-44-6146     TCGA-44-6147     TCGA-44-6148 
"CD33 WILD-TYPE" "CD33 WILD-TYPE" "CD33 WILD-TYPE" "CD33 WILD-TYPE" 
    TCGA-44-6774     TCGA-44-6775     TCGA-44-6776     TCGA-44-6777 
"CD33 WILD-TYPE" "CD33 WILD-TYPE" "CD33 WILD-TYPE" "CD33 WILD-TYPE" 
    TCGA-44-6778     TCGA-44-6779     TCGA-49-4486     TCGA-49-4487 
"CD33 WILD-TYPE" "CD33 WILD-TYPE" "CD33 WILD-TYPE" "CD33 WILD-TYPE" 
    TCGA-49-4488     TCGA-49-4490     TCGA-49-4494     TCGA-49-4501 
"CD33 WILD-TYPE" "CD33 WILD-TYPE" "CD33 WILD-TYPE" "CD33 WILD-TYPE" 
    TCGA-49-4505     TCGA-49-4506     TCGA-49-4507     TCGA-49-4510 
"CD33 WILD-TYPE" "CD33 WILD-TYPE" "CD33 WILD-TYPE" "CD33 WILD-TYPE" 
    TCGA-49-4512     TCGA-49-4514     TCGA-49-6742     TCGA-49-6743 
"CD33 WILD-TYPE" "CD33 WILD-TYPE" "CD33 WILD-TYPE"   "CD33 MUTATED" 
    TCGA-49-6744     TCGA-49-6745     TCGA-50-5044     TCGA-50-5045 
"CD33 WILD-TYPE" "CD33 WILD-TYPE" "CD33 WILD-TYPE" "CD33 WILD-TYPE" 
    TCGA-50-5049     TCGA-50-5051     TCGA-50-5055     TCGA-50-5066 
  "CD33 MUTATED" "CD33 WILD-TYPE" "CD33 WILD-TYPE" "CD33 WILD-TYPE" 
    TCGA-50-5068     TCGA-50-5072     TCGA-50-5930     TCGA-50-5931 
"CD33 WILD-TYPE" "CD33 WILD-TYPE" "CD33 WILD-TYPE" "CD33 WILD-TYPE" 
    TCGA-50-5932     TCGA-50-5933     TCGA-50-5935     TCGA-50-5936 
"CD33 WILD-TYPE" "CD33 WILD-TYPE" "CD33 WILD-TYPE" "CD33 WILD-TYPE" 
    TCGA-50-5939     TCGA-50-5941     TCGA-50-5942     TCGA-50-5944 
"CD33 WILD-TYPE" "CD33 WILD-TYPE" "CD33 WILD-TYPE" "CD33 WILD-TYPE" 
    TCGA-50-5946     TCGA-50-6590     TCGA-50-6591     TCGA-50-6592 
"CD33 WILD-TYPE" "CD33 WILD-TYPE" "CD33 WILD-TYPE" "CD33 WILD-TYPE" 
    TCGA-50-6593     TCGA-50-6594     TCGA-50-6595     TCGA-50-6597 
"CD33 WILD-TYPE" "CD33 WILD-TYPE" "CD33 WILD-TYPE" "CD33 WILD-TYPE" 
    TCGA-55-1592     TCGA-55-1594     TCGA-55-1595     TCGA-55-1596 
"CD33 WILD-TYPE" "CD33 WILD-TYPE" "CD33 WILD-TYPE" "CD33 WILD-TYPE" 
    TCGA-55-5899     TCGA-55-6543     TCGA-55-6642     TCGA-55-6712 
"CD33 WILD-TYPE" "CD33 WILD-TYPE" "CD33 WILD-TYPE" "CD33 WILD-TYPE" 
    TCGA-64-1676     TCGA-64-1677     TCGA-64-1678     TCGA-64-1680 
"CD33 WILD-TYPE" "CD33 WILD-TYPE" "CD33 WILD-TYPE" "CD33 WILD-TYPE" 
    TCGA-64-5774     TCGA-64-5775     TCGA-64-5778     TCGA-64-5779 
"CD33 WILD-TYPE" "CD33 WILD-TYPE" "CD33 WILD-TYPE" "CD33 WILD-TYPE" 
    TCGA-64-5781     TCGA-64-5815     TCGA-67-3770     TCGA-67-3771 
"CD33 WILD-TYPE"   "CD33 MUTATED" "CD33 WILD-TYPE"   "CD33 MUTATED" 
    TCGA-67-3772     TCGA-67-3773     TCGA-67-3774     TCGA-67-6215 
"CD33 WILD-TYPE" "CD33 WILD-TYPE" "CD33 WILD-TYPE" "CD33 WILD-TYPE" 
    TCGA-67-6216     TCGA-67-6217     TCGA-71-6725     TCGA-73-4658 
"CD33 WILD-TYPE" "CD33 WILD-TYPE" "CD33 WILD-TYPE" "CD33 WILD-TYPE" 
    TCGA-73-4659     TCGA-73-4662     TCGA-73-4666     TCGA-73-4668 
"CD33 WILD-TYPE" "CD33 WILD-TYPE" "CD33 WILD-TYPE" "CD33 WILD-TYPE" 
    TCGA-73-4670     TCGA-73-4675     TCGA-73-4676     TCGA-73-4677 
"CD33 WILD-TYPE" "CD33 WILD-TYPE" "CD33 WILD-TYPE" "CD33 WILD-TYPE" 
    TCGA-91-6828     TCGA-91-6829     TCGA-91-6831     TCGA-91-6835 
"CD33 WILD-TYPE" "CD33 WILD-TYPE" "CD33 WILD-TYPE" "CD33 WILD-TYPE" 
    TCGA-91-6836 
"CD33 WILD-TYPE" 
    TCGA-05-4249     TCGA-05-4250     TCGA-05-4382     TCGA-05-4384 
"CD33 WILD-TYPE" "CD33 WILD-TYPE" "CD33 WILD-TYPE" "CD33 WILD-TYPE" 
    TCGA-05-4390     TCGA-05-4396     TCGA-05-4397     TCGA-05-4398 
"CD33 WILD-TYPE" "CD33 WILD-TYPE" "CD33 WILD-TYPE"   "CD33 MUTATED" 
    TCGA-05-4402     TCGA-05-4405     TCGA-05-4415     TCGA-05-4417 
"CD33 WILD-TYPE" "CD33 WILD-TYPE" "CD33 WILD-TYPE" "CD33 WILD-TYPE" 
    TCGA-05-4418     TCGA-05-4420     TCGA-05-4424     TCGA-05-4426 
"CD33 WILD-TYPE" "CD33 WILD-TYPE" "CD33 WILD-TYPE" "CD33 WILD-TYPE" 
    TCGA-05-4427     TCGA-05-4430     TCGA-05-4432     TCGA-05-4433 
"CD33 WILD-TYPE" "CD33 WILD-TYPE" "CD33 WILD-TYPE" "CD33 WILD-TYPE" 
    TCGA-05-4434     TCGA-05-5420     TCGA-05-5423     TCGA-05-5425 
"CD33 WILD-TYPE" "CD33 WILD-TYPE" "CD33 WILD-TYPE" "CD33 WILD-TYPE" 
    TCGA-05-5429     TCGA-05-5715     TCGA-35-3615     TCGA-35-4122 
"CD33 WILD-TYPE" "CD33 WILD-TYPE" "CD33 WILD-TYPE" "CD33 WILD-TYPE" 
    TCGA-35-4123     TCGA-35-5375     TCGA-38-4625     TCGA-38-4626 
"CD33 WILD-TYPE" "CD33 WILD-TYPE" "CD33 WILD-TYPE" "CD33 WILD-TYPE" 
    TCGA-38-4627     TCGA-38-4628     TCGA-38-4629     TCGA-38-4630 
"CD33 WILD-TYPE" "CD33 WILD-TYPE" "CD33 WILD-TYPE" "CD33 WILD-TYPE" 
    TCGA-38-4631     TCGA-38-4632     TCGA-38-6178     TCGA-44-2655 
"CD33 WILD-TYPE" "CD33 WILD-TYPE" "CD33 WILD-TYPE" "CD33 WILD-TYPE" 
    TCGA-44-2656     TCGA-44-2657     TCGA-44-2659     TCGA-44-2661 
"CD33 WILD-TYPE" "CD33 WILD-TYPE" "CD33 WILD-TYPE" "CD33 WILD-TYPE" 
    TCGA-44-2662     TCGA-44-2665     TCGA-44-2666     TCGA-44-2668 
"CD33 WILD-TYPE" "CD33 WILD-TYPE" "CD33 WILD-TYPE" "CD33 WILD-TYPE" 
    TCGA-44-3396     TCGA-44-3398     TCGA-44-3918     TCGA-44-3919 
"CD33 WILD-TYPE"   "CD33 MUTATED"   "CD33 MUTATED" "CD33 WILD-TYPE" 
    TCGA-44-4112     TCGA-44-5643     TCGA-44-5645     TCGA-44-6144 
"CD33 WILD-TYPE" "CD33 WILD-TYPE" "CD33 WILD-TYPE" "CD33 WILD-TYPE" 
    TCGA-44-6145     TCGA-44-6146     TCGA-44-6147     TCGA-44-6148 
"CD33 WILD-TYPE" "CD33 WILD-TYPE" "CD33 WILD-TYPE" "CD33 WILD-TYPE" 
    TCGA-44-6774     TCGA-44-6775     TCGA-44-6776     TCGA-44-6777 
"CD33 WILD-TYPE" "CD33 WILD-TYPE" "CD33 WILD-TYPE" "CD33 WILD-TYPE" 
    TCGA-44-6778     TCGA-44-6779     TCGA-49-4486     TCGA-49-4487 
"CD33 WILD-TYPE" "CD33 WILD-TYPE" "CD33 WILD-TYPE" "CD33 WILD-TYPE" 
    TCGA-49-4488     TCGA-49-4490     TCGA-49-4494     TCGA-49-4501 
"CD33 WILD-TYPE" "CD33 WILD-TYPE" "CD33 WILD-TYPE" "CD33 WILD-TYPE" 
    TCGA-49-4505     TCGA-49-4506     TCGA-49-4507     TCGA-49-4510 
"CD33 WILD-TYPE" "CD33 WILD-TYPE" "CD33 WILD-TYPE" "CD33 WILD-TYPE" 
    TCGA-49-4512     TCGA-49-4514     TCGA-49-6742     TCGA-49-6743 
"CD33 WILD-TYPE" "CD33 WILD-TYPE" "CD33 WILD-TYPE"   "CD33 MUTATED" 
    TCGA-49-6744     TCGA-49-6745     TCGA-50-5044     TCGA-50-5045 
"CD33 WILD-TYPE" "CD33 WILD-TYPE" "CD33 WILD-TYPE" "CD33 WILD-TYPE" 
    TCGA-50-5049     TCGA-50-5051     TCGA-50-5055     TCGA-50-5066 
  "CD33 MUTATED" "CD33 WILD-TYPE" "CD33 WILD-TYPE" "CD33 WILD-TYPE" 
    TCGA-50-5068     TCGA-50-5072     TCGA-50-5930     TCGA-50-5931 
"CD33 WILD-TYPE" "CD33 WILD-TYPE" "CD33 WILD-TYPE" "CD33 WILD-TYPE" 
    TCGA-50-5932     TCGA-50-5933     TCGA-50-5935     TCGA-50-5936 
"CD33 WILD-TYPE" "CD33 WILD-TYPE" "CD33 WILD-TYPE" "CD33 WILD-TYPE" 
    TCGA-50-5939     TCGA-50-5941     TCGA-50-5942     TCGA-50-5944 
"CD33 WILD-TYPE" "CD33 WILD-TYPE" "CD33 WILD-TYPE" "CD33 WILD-TYPE" 
    TCGA-50-5946     TCGA-50-6590     TCGA-50-6591     TCGA-50-6592 
"CD33 WILD-TYPE" "CD33 WILD-TYPE" "CD33 WILD-TYPE" "CD33 WILD-TYPE" 
    TCGA-50-6593     TCGA-50-6594     TCGA-50-6595     TCGA-50-6597 
"CD33 WILD-TYPE" "CD33 WILD-TYPE" "CD33 WILD-TYPE" "CD33 WILD-TYPE" 
    TCGA-55-1592     TCGA-55-1594     TCGA-55-1595     TCGA-55-1596 
"CD33 WILD-TYPE" "CD33 WILD-TYPE" "CD33 WILD-TYPE" "CD33 WILD-TYPE" 
    TCGA-55-5899     TCGA-55-6543     TCGA-55-6642     TCGA-55-6712 
"CD33 WILD-TYPE" "CD33 WILD-TYPE" "CD33 WILD-TYPE" "CD33 WILD-TYPE" 
    TCGA-64-1676     TCGA-64-1677     TCGA-64-1678     TCGA-64-1680 
"CD33 WILD-TYPE" "CD33 WILD-TYPE" "CD33 WILD-TYPE" "CD33 WILD-TYPE" 
    TCGA-64-5774     TCGA-64-5775     TCGA-64-5778     TCGA-64-5779 
"CD33 WILD-TYPE" "CD33 WILD-TYPE" "CD33 WILD-TYPE" "CD33 WILD-TYPE" 
    TCGA-64-5781     TCGA-64-5815     TCGA-67-3770     TCGA-67-3771 
"CD33 WILD-TYPE"   "CD33 MUTATED" "CD33 WILD-TYPE"   "CD33 MUTATED" 
    TCGA-67-3772     TCGA-67-3773     TCGA-67-3774     TCGA-67-6215 
"CD33 WILD-TYPE" "CD33 WILD-TYPE" "CD33 WILD-TYPE" "CD33 WILD-TYPE" 
    TCGA-67-6216     TCGA-67-6217     TCGA-71-6725     TCGA-73-4658 
"CD33 WILD-TYPE" "CD33 WILD-TYPE" "CD33 WILD-TYPE" "CD33 WILD-TYPE" 
    TCGA-73-4659     TCGA-73-4662     TCGA-73-4666     TCGA-73-4668 
"CD33 WILD-TYPE" "CD33 WILD-TYPE" "CD33 WILD-TYPE" "CD33 WILD-TYPE" 
    TCGA-73-4670     TCGA-73-4675     TCGA-73-4676     TCGA-73-4677 
"CD33 WILD-TYPE" "CD33 WILD-TYPE" "CD33 WILD-TYPE" "CD33 WILD-TYPE" 
    TCGA-91-6828     TCGA-91-6829     TCGA-91-6831     TCGA-91-6835 
"CD33 WILD-TYPE" "CD33 WILD-TYPE" "CD33 WILD-TYPE" "CD33 WILD-TYPE" 
    TCGA-91-6836 
"CD33 WILD-TYPE" 
[1] "hr="     "2.7e+07"
D234V2, continuous
D234V3, binary
[1] "tbl2"
                cls
clus             [,1] [,2]
  CD33 MUTATED      5    2
  CD33 WILD-TYPE   88   77
        clus
vv       CD33 MUTATED CD33 WILD-TYPE
  FEMALE            5             88
  MALE              2             77
D234V4, continuous
D234V5, multiclass
D234V6, multiclass
    clus
vv   CD33 MUTATED CD33 WILD-TYPE
  T1            4             37
  T2            2            106
  T3            0             14
  T4            1              7
D234V7, multiclass
       clus
vv      CD33 MUTATED CD33 WILD-TYPE
  N0               4             91
  N1               1             36
  N2+N3            2             33
D234V8, multiclass
    clus
vv   CD33 MUTATED CD33 WILD-TYPE
  M0            6            131
  M1            0              9
  MX            1             21
D234V9, multiclass
     clus
vv    CD33 MUTATED CD33 WILD-TYPE
  I              4             84
  II             1             32
  III            2             37
  IV             0              9
D234V10, binary
[1] "tbl2"
                cls
clus             [,1] [,2]
  CD33 MUTATED      1    6
  CD33 WILD-TYPE   15  150
     clus
vv    CD33 MUTATED CD33 WILD-TYPE
  NO             1             15
  YES            6            150
D234V11, continuous
D234V12, continuous
D234V13, multiclass
                                             clus
vv                                            CD33 MUTATED CD33 WILD-TYPE
  CURRENT REFORMED SMOKER FOR < OR = 15 YEARS            3             59
  CURRENT REFORMED SMOKER FOR > 15 YEARS                 2             44
  CURRENT SMOKER                                         1             27
  LIFELONG NON-SMOKER                                    0             24
D234V14, continuous
[1] "Remove cluster labels:" "CD33 MUTATED"          
clus
  CD33 MUTATED CD33 WILD-TYPE 
             2             66 
    TCGA-05-4384     TCGA-05-4390     TCGA-05-4396     TCGA-05-4405 
"CD33 WILD-TYPE" "CD33 WILD-TYPE" "CD33 WILD-TYPE" "CD33 WILD-TYPE" 
    TCGA-05-4410     TCGA-05-4415     TCGA-05-4417     TCGA-05-4424 
"CD33 WILD-TYPE" "CD33 WILD-TYPE" "CD33 WILD-TYPE" "CD33 WILD-TYPE" 
    TCGA-05-4427     TCGA-05-4433     TCGA-05-5420     TCGA-05-5423 
"CD33 WILD-TYPE" "CD33 WILD-TYPE" "CD33 WILD-TYPE" "CD33 WILD-TYPE" 
    TCGA-05-5425     TCGA-05-5428     TCGA-35-4122     TCGA-35-4123 
"CD33 WILD-TYPE" "CD33 WILD-TYPE" "CD33 WILD-TYPE" "CD33 WILD-TYPE" 
    TCGA-35-5375     TCGA-38-4625     TCGA-38-4626     TCGA-44-2655 
"CD33 WILD-TYPE" "CD33 WILD-TYPE" "CD33 WILD-TYPE" "CD33 WILD-TYPE" 
    TCGA-44-2656     TCGA-44-2657     TCGA-44-2659     TCGA-44-2662 
"CD33 WILD-TYPE" "CD33 WILD-TYPE" "CD33 WILD-TYPE" "CD33 WILD-TYPE" 
    TCGA-44-2666     TCGA-44-2668     TCGA-44-3396     TCGA-44-4112 
"CD33 WILD-TYPE" "CD33 WILD-TYPE" "CD33 WILD-TYPE" "CD33 WILD-TYPE" 
    TCGA-44-5645     TCGA-44-6144     TCGA-44-6145     TCGA-44-6147 
"CD33 WILD-TYPE" "CD33 WILD-TYPE" "CD33 WILD-TYPE" "CD33 WILD-TYPE" 
    TCGA-44-6148     TCGA-44-6774     TCGA-44-6775     TCGA-44-6776 
"CD33 WILD-TYPE" "CD33 WILD-TYPE" "CD33 WILD-TYPE" "CD33 WILD-TYPE" 
    TCGA-44-6777     TCGA-44-6778     TCGA-44-6779     TCGA-49-4486 
"CD33 WILD-TYPE" "CD33 WILD-TYPE" "CD33 WILD-TYPE" "CD33 WILD-TYPE" 
    TCGA-49-4494     TCGA-49-4505     TCGA-55-1592     TCGA-55-1594 
"CD33 WILD-TYPE" "CD33 WILD-TYPE" "CD33 WILD-TYPE" "CD33 WILD-TYPE" 
    TCGA-55-1595     TCGA-55-1596     TCGA-55-5899     TCGA-55-6642 
"CD33 WILD-TYPE" "CD33 WILD-TYPE" "CD33 WILD-TYPE" "CD33 WILD-TYPE" 
    TCGA-55-6712     TCGA-64-1677     TCGA-64-1678     TCGA-64-1680 
"CD33 WILD-TYPE" "CD33 WILD-TYPE" "CD33 WILD-TYPE" "CD33 WILD-TYPE" 
    TCGA-64-5774     TCGA-64-5775     TCGA-64-5778     TCGA-64-5779 
"CD33 WILD-TYPE" "CD33 WILD-TYPE" "CD33 WILD-TYPE" "CD33 WILD-TYPE" 
    TCGA-64-5781     TCGA-73-4659     TCGA-73-4662     TCGA-73-4666 
"CD33 WILD-TYPE" "CD33 WILD-TYPE" "CD33 WILD-TYPE" "CD33 WILD-TYPE" 
    TCGA-73-4668     TCGA-73-4670     TCGA-73-4675     TCGA-73-4676 
"CD33 WILD-TYPE" "CD33 WILD-TYPE" "CD33 WILD-TYPE" "CD33 WILD-TYPE" 
    TCGA-91-6829     TCGA-91-6836 
"CD33 WILD-TYPE" "CD33 WILD-TYPE" 

Clustering(235) Variable = RERGL MUTATION ANALYSIS
D235V1, survival
                 sevent
clus2              0  1
  RERGL MUTATED    4  0
  RERGL WILD-TYPE 95 50
  RERGL MUTATED RERGL WILD-TYPE 
              4             145 
  RERGL MUTATED RERGL WILD-TYPE 
              0              50 
$`RERGL MUTATED`
TCGA-05-5425 TCGA-38-4626 TCGA-44-6776 TCGA-49-6745 
        2.96        85.32        63.72         4.93 

$`RERGL WILD-TYPE`
TCGA-05-4249 TCGA-05-4250 TCGA-05-4382 TCGA-05-4384 TCGA-05-4390 TCGA-05-4396 
       38.07         3.98        19.92        14.01        37.02         9.96 
TCGA-05-4397 TCGA-05-4398 TCGA-05-4402 TCGA-05-4405 TCGA-05-4415 TCGA-05-4417 
       24.03        47.05         8.02        20.05         2.96        14.93 
TCGA-05-4418 TCGA-05-4420 TCGA-05-4424 TCGA-05-4426 TCGA-05-4427 TCGA-05-4430 
        8.98        29.95        30.02        26.01        26.01        25.02 
TCGA-05-4432 TCGA-05-4433 TCGA-05-4434 TCGA-05-5420 TCGA-05-5423 TCGA-05-5429 
       25.02        24.00        15.02         1.02         4.96         0.99 
TCGA-05-5715 TCGA-35-3615 TCGA-35-4122 TCGA-35-4123 TCGA-35-5375 TCGA-38-4625 
        2.04         0.46         7.36         5.95         8.68        47.61 
TCGA-38-4627 TCGA-38-4628 TCGA-38-4629 TCGA-38-4630 TCGA-38-4631 TCGA-38-4632 
       37.71        49.02        28.37        35.28        11.64        44.61 
TCGA-38-6178 TCGA-44-2655 TCGA-44-2656 TCGA-44-2657 TCGA-44-2659 TCGA-44-2661 
        5.19        18.87        19.10        13.15        17.39         3.39 
TCGA-44-2662 TCGA-44-2665 TCGA-44-2666 TCGA-44-2668 TCGA-44-3396 TCGA-44-3398 
       15.78        13.15         3.19         8.09        10.22         8.32 
TCGA-44-3918 TCGA-44-3919 TCGA-44-4112 TCGA-44-5643 TCGA-44-5645 TCGA-44-6144 
        6.44         6.21         4.60         3.48         6.84         0.30 
TCGA-44-6145 TCGA-44-6146 TCGA-44-6147 TCGA-44-6148 TCGA-44-6774 TCGA-44-6775 
        3.35         9.93         7.76         3.12         5.42         2.70 
TCGA-44-6777 TCGA-44-6778 TCGA-44-6779 TCGA-49-4486 TCGA-49-4487 TCGA-49-4488 
       32.45        36.49        16.41        76.21        28.11        28.57 
TCGA-49-4490 TCGA-49-4494 TCGA-49-4501 TCGA-49-4505 TCGA-49-4506 TCGA-49-4507 
       12.66        35.54        46.72        14.07        32.84         8.81 
TCGA-49-4510 TCGA-49-4512 TCGA-49-4514 TCGA-49-6742 TCGA-49-6743 TCGA-49-6744 
       29.46        29.75        43.20        15.02        12.13        12.99 
TCGA-50-5044 TCGA-50-5045 TCGA-50-5049 TCGA-50-5051 TCGA-50-5055 TCGA-50-5066 
       20.48        71.47        48.82        14.96        25.81         9.76 
TCGA-50-5068 TCGA-50-5072 TCGA-50-5930 TCGA-50-5931 TCGA-50-5932 TCGA-50-5933 
       49.28         8.05         9.27         8.78        35.87        77.88 
TCGA-50-5935 TCGA-50-5936 TCGA-50-5939 TCGA-50-5941 TCGA-50-5942 TCGA-50-5944 
       21.47         8.45        15.12         9.37         4.44        12.26 
TCGA-50-5946 TCGA-50-6590 TCGA-50-6591 TCGA-50-6592 TCGA-50-6593 TCGA-50-6594 
       11.47        42.31         3.88        25.51        11.05        12.16 
TCGA-50-6595 TCGA-50-6597 TCGA-55-1592 TCGA-55-1594 TCGA-55-1595 TCGA-55-1596 
        6.21        33.37        23.05        38.73        48.62        45.17 
TCGA-55-5899 TCGA-55-6543 TCGA-55-6642 TCGA-55-6712 TCGA-64-1676 TCGA-64-1677 
        2.86         0.07        32.61         0.79        56.81        20.65 
TCGA-64-1678 TCGA-64-1680 TCGA-64-5774 TCGA-64-5775 TCGA-64-5778 TCGA-64-5779 
       39.09        37.02        83.84         0.10        30.44        16.67 
TCGA-64-5781 TCGA-64-5815 TCGA-67-3770 TCGA-67-3771 TCGA-67-3772 TCGA-67-3773 
       39.52         7.33         0.99         1.97         0.59         2.04 
TCGA-67-3774 TCGA-67-6215 TCGA-67-6216 TCGA-67-6217 TCGA-71-6725 TCGA-73-4658 
        0.59         0.89         0.69        13.87         2.01        52.57 
TCGA-73-4659 TCGA-73-4662 TCGA-73-4666 TCGA-73-4668 TCGA-73-4670 TCGA-73-4675 
       23.38        29.95        20.28        15.35         0.46         1.32 
TCGA-73-4676 TCGA-73-4677 TCGA-91-6828 TCGA-91-6829 TCGA-91-6831 TCGA-91-6835 
        4.01         1.25         1.22        41.33         1.28         1.15 
TCGA-91-6836 
        0.36 

  RERGL MUTATED RERGL WILD-TYPE 
           2.96            0.07 
  RERGL MUTATED RERGL WILD-TYPE 
          85.32           83.84 
  RERGL MUTATED RERGL WILD-TYPE 
         34.325          13.870 
[1] "3.0 - 85.3 (34.3)" "0.1 - 83.8 (13.9)"
     TCGA-05-4249      TCGA-05-4250      TCGA-05-4382      TCGA-05-4384 
"RERGL WILD-TYPE" "RERGL WILD-TYPE" "RERGL WILD-TYPE" "RERGL WILD-TYPE" 
     TCGA-05-4390      TCGA-05-4396      TCGA-05-4397      TCGA-05-4398 
"RERGL WILD-TYPE" "RERGL WILD-TYPE" "RERGL WILD-TYPE" "RERGL WILD-TYPE" 
     TCGA-05-4402      TCGA-05-4405      TCGA-05-4415      TCGA-05-4417 
"RERGL WILD-TYPE" "RERGL WILD-TYPE" "RERGL WILD-TYPE" "RERGL WILD-TYPE" 
     TCGA-05-4418      TCGA-05-4420      TCGA-05-4424      TCGA-05-4426 
"RERGL WILD-TYPE" "RERGL WILD-TYPE" "RERGL WILD-TYPE" "RERGL WILD-TYPE" 
     TCGA-05-4427      TCGA-05-4430      TCGA-05-4432      TCGA-05-4433 
"RERGL WILD-TYPE" "RERGL WILD-TYPE" "RERGL WILD-TYPE" "RERGL WILD-TYPE" 
     TCGA-05-4434      TCGA-05-5420      TCGA-05-5423      TCGA-05-5425 
"RERGL WILD-TYPE" "RERGL WILD-TYPE" "RERGL WILD-TYPE"   "RERGL MUTATED" 
     TCGA-05-5429      TCGA-05-5715      TCGA-35-3615      TCGA-35-4122 
"RERGL WILD-TYPE" "RERGL WILD-TYPE" "RERGL WILD-TYPE" "RERGL WILD-TYPE" 
     TCGA-35-4123      TCGA-35-5375      TCGA-38-4625      TCGA-38-4626 
"RERGL WILD-TYPE" "RERGL WILD-TYPE" "RERGL WILD-TYPE"   "RERGL MUTATED" 
     TCGA-38-4627      TCGA-38-4628      TCGA-38-4629      TCGA-38-4630 
"RERGL WILD-TYPE" "RERGL WILD-TYPE" "RERGL WILD-TYPE" "RERGL WILD-TYPE" 
     TCGA-38-4631      TCGA-38-4632      TCGA-38-6178      TCGA-44-2655 
"RERGL WILD-TYPE" "RERGL WILD-TYPE" "RERGL WILD-TYPE" "RERGL WILD-TYPE" 
     TCGA-44-2656      TCGA-44-2657      TCGA-44-2659      TCGA-44-2661 
"RERGL WILD-TYPE" "RERGL WILD-TYPE" "RERGL WILD-TYPE" "RERGL WILD-TYPE" 
     TCGA-44-2662      TCGA-44-2665      TCGA-44-2666      TCGA-44-2668 
"RERGL WILD-TYPE" "RERGL WILD-TYPE" "RERGL WILD-TYPE" "RERGL WILD-TYPE" 
     TCGA-44-3396      TCGA-44-3398      TCGA-44-3918      TCGA-44-3919 
"RERGL WILD-TYPE" "RERGL WILD-TYPE" "RERGL WILD-TYPE" "RERGL WILD-TYPE" 
     TCGA-44-4112      TCGA-44-5643      TCGA-44-5645      TCGA-44-6144 
"RERGL WILD-TYPE" "RERGL WILD-TYPE" "RERGL WILD-TYPE" "RERGL WILD-TYPE" 
     TCGA-44-6145      TCGA-44-6146      TCGA-44-6147      TCGA-44-6148 
"RERGL WILD-TYPE" "RERGL WILD-TYPE" "RERGL WILD-TYPE" "RERGL WILD-TYPE" 
     TCGA-44-6774      TCGA-44-6775      TCGA-44-6776      TCGA-44-6777 
"RERGL WILD-TYPE" "RERGL WILD-TYPE"   "RERGL MUTATED" "RERGL WILD-TYPE" 
     TCGA-44-6778      TCGA-44-6779      TCGA-49-4486      TCGA-49-4487 
"RERGL WILD-TYPE" "RERGL WILD-TYPE" "RERGL WILD-TYPE" "RERGL WILD-TYPE" 
     TCGA-49-4488      TCGA-49-4490      TCGA-49-4494      TCGA-49-4501 
"RERGL WILD-TYPE" "RERGL WILD-TYPE" "RERGL WILD-TYPE" "RERGL WILD-TYPE" 
     TCGA-49-4505      TCGA-49-4506      TCGA-49-4507      TCGA-49-4510 
"RERGL WILD-TYPE" "RERGL WILD-TYPE" "RERGL WILD-TYPE" "RERGL WILD-TYPE" 
     TCGA-49-4512      TCGA-49-4514      TCGA-49-6742      TCGA-49-6743 
"RERGL WILD-TYPE" "RERGL WILD-TYPE" "RERGL WILD-TYPE" "RERGL WILD-TYPE" 
     TCGA-49-6744      TCGA-49-6745      TCGA-50-5044      TCGA-50-5045 
"RERGL WILD-TYPE"   "RERGL MUTATED" "RERGL WILD-TYPE" "RERGL WILD-TYPE" 
     TCGA-50-5049      TCGA-50-5051      TCGA-50-5055      TCGA-50-5066 
"RERGL WILD-TYPE" "RERGL WILD-TYPE" "RERGL WILD-TYPE" "RERGL WILD-TYPE" 
     TCGA-50-5068      TCGA-50-5072      TCGA-50-5930      TCGA-50-5931 
"RERGL WILD-TYPE" "RERGL WILD-TYPE" "RERGL WILD-TYPE" "RERGL WILD-TYPE" 
     TCGA-50-5932      TCGA-50-5933      TCGA-50-5935      TCGA-50-5936 
"RERGL WILD-TYPE" "RERGL WILD-TYPE" "RERGL WILD-TYPE" "RERGL WILD-TYPE" 
     TCGA-50-5939      TCGA-50-5941      TCGA-50-5942      TCGA-50-5944 
"RERGL WILD-TYPE" "RERGL WILD-TYPE" "RERGL WILD-TYPE" "RERGL WILD-TYPE" 
     TCGA-50-5946      TCGA-50-6590      TCGA-50-6591      TCGA-50-6592 
"RERGL WILD-TYPE" "RERGL WILD-TYPE" "RERGL WILD-TYPE" "RERGL WILD-TYPE" 
     TCGA-50-6593      TCGA-50-6594      TCGA-50-6595      TCGA-50-6597 
"RERGL WILD-TYPE" "RERGL WILD-TYPE" "RERGL WILD-TYPE" "RERGL WILD-TYPE" 
     TCGA-55-1592      TCGA-55-1594      TCGA-55-1595      TCGA-55-1596 
"RERGL WILD-TYPE" "RERGL WILD-TYPE" "RERGL WILD-TYPE" "RERGL WILD-TYPE" 
     TCGA-55-5899      TCGA-55-6543      TCGA-55-6642      TCGA-55-6712 
"RERGL WILD-TYPE" "RERGL WILD-TYPE" "RERGL WILD-TYPE" "RERGL WILD-TYPE" 
     TCGA-64-1676      TCGA-64-1677      TCGA-64-1678      TCGA-64-1680 
"RERGL WILD-TYPE" "RERGL WILD-TYPE" "RERGL WILD-TYPE" "RERGL WILD-TYPE" 
     TCGA-64-5774      TCGA-64-5775      TCGA-64-5778      TCGA-64-5779 
"RERGL WILD-TYPE" "RERGL WILD-TYPE" "RERGL WILD-TYPE" "RERGL WILD-TYPE" 
     TCGA-64-5781      TCGA-64-5815      TCGA-67-3770      TCGA-67-3771 
"RERGL WILD-TYPE" "RERGL WILD-TYPE" "RERGL WILD-TYPE" "RERGL WILD-TYPE" 
     TCGA-67-3772      TCGA-67-3773      TCGA-67-3774      TCGA-67-6215 
"RERGL WILD-TYPE" "RERGL WILD-TYPE" "RERGL WILD-TYPE" "RERGL WILD-TYPE" 
     TCGA-67-6216      TCGA-67-6217      TCGA-71-6725      TCGA-73-4658 
"RERGL WILD-TYPE" "RERGL WILD-TYPE" "RERGL WILD-TYPE" "RERGL WILD-TYPE" 
     TCGA-73-4659      TCGA-73-4662      TCGA-73-4666      TCGA-73-4668 
"RERGL WILD-TYPE" "RERGL WILD-TYPE" "RERGL WILD-TYPE" "RERGL WILD-TYPE" 
     TCGA-73-4670      TCGA-73-4675      TCGA-73-4676      TCGA-73-4677 
"RERGL WILD-TYPE" "RERGL WILD-TYPE" "RERGL WILD-TYPE" "RERGL WILD-TYPE" 
     TCGA-91-6828      TCGA-91-6829      TCGA-91-6831      TCGA-91-6835 
"RERGL WILD-TYPE" "RERGL WILD-TYPE" "RERGL WILD-TYPE" "RERGL WILD-TYPE" 
     TCGA-91-6836 
"RERGL WILD-TYPE" 
     TCGA-05-4249      TCGA-05-4250      TCGA-05-4382      TCGA-05-4384 
"RERGL WILD-TYPE" "RERGL WILD-TYPE" "RERGL WILD-TYPE" "RERGL WILD-TYPE" 
     TCGA-05-4390      TCGA-05-4396      TCGA-05-4397      TCGA-05-4398 
"RERGL WILD-TYPE" "RERGL WILD-TYPE" "RERGL WILD-TYPE" "RERGL WILD-TYPE" 
     TCGA-05-4402      TCGA-05-4405      TCGA-05-4415      TCGA-05-4417 
"RERGL WILD-TYPE" "RERGL WILD-TYPE" "RERGL WILD-TYPE" "RERGL WILD-TYPE" 
     TCGA-05-4418      TCGA-05-4420      TCGA-05-4424      TCGA-05-4426 
"RERGL WILD-TYPE" "RERGL WILD-TYPE" "RERGL WILD-TYPE" "RERGL WILD-TYPE" 
     TCGA-05-4427      TCGA-05-4430      TCGA-05-4432      TCGA-05-4433 
"RERGL WILD-TYPE" "RERGL WILD-TYPE" "RERGL WILD-TYPE" "RERGL WILD-TYPE" 
     TCGA-05-4434      TCGA-05-5420      TCGA-05-5423      TCGA-05-5425 
"RERGL WILD-TYPE" "RERGL WILD-TYPE" "RERGL WILD-TYPE"   "RERGL MUTATED" 
     TCGA-05-5429      TCGA-05-5715      TCGA-35-3615      TCGA-35-4122 
"RERGL WILD-TYPE" "RERGL WILD-TYPE" "RERGL WILD-TYPE" "RERGL WILD-TYPE" 
     TCGA-35-4123      TCGA-35-5375      TCGA-38-4625      TCGA-38-4626 
"RERGL WILD-TYPE" "RERGL WILD-TYPE" "RERGL WILD-TYPE"   "RERGL MUTATED" 
     TCGA-38-4627      TCGA-38-4628      TCGA-38-4629      TCGA-38-4630 
"RERGL WILD-TYPE" "RERGL WILD-TYPE" "RERGL WILD-TYPE" "RERGL WILD-TYPE" 
     TCGA-38-4631      TCGA-38-4632      TCGA-38-6178      TCGA-44-2655 
"RERGL WILD-TYPE" "RERGL WILD-TYPE" "RERGL WILD-TYPE" "RERGL WILD-TYPE" 
     TCGA-44-2656      TCGA-44-2657      TCGA-44-2659      TCGA-44-2661 
"RERGL WILD-TYPE" "RERGL WILD-TYPE" "RERGL WILD-TYPE" "RERGL WILD-TYPE" 
     TCGA-44-2662      TCGA-44-2665      TCGA-44-2666      TCGA-44-2668 
"RERGL WILD-TYPE" "RERGL WILD-TYPE" "RERGL WILD-TYPE" "RERGL WILD-TYPE" 
     TCGA-44-3396      TCGA-44-3398      TCGA-44-3918      TCGA-44-3919 
"RERGL WILD-TYPE" "RERGL WILD-TYPE" "RERGL WILD-TYPE" "RERGL WILD-TYPE" 
     TCGA-44-4112      TCGA-44-5643      TCGA-44-5645      TCGA-44-6144 
"RERGL WILD-TYPE" "RERGL WILD-TYPE" "RERGL WILD-TYPE" "RERGL WILD-TYPE" 
     TCGA-44-6145      TCGA-44-6146      TCGA-44-6147      TCGA-44-6148 
"RERGL WILD-TYPE" "RERGL WILD-TYPE" "RERGL WILD-TYPE" "RERGL WILD-TYPE" 
     TCGA-44-6774      TCGA-44-6775      TCGA-44-6776      TCGA-44-6777 
"RERGL WILD-TYPE" "RERGL WILD-TYPE"   "RERGL MUTATED" "RERGL WILD-TYPE" 
     TCGA-44-6778      TCGA-44-6779      TCGA-49-4486      TCGA-49-4487 
"RERGL WILD-TYPE" "RERGL WILD-TYPE" "RERGL WILD-TYPE" "RERGL WILD-TYPE" 
     TCGA-49-4488      TCGA-49-4490      TCGA-49-4494      TCGA-49-4501 
"RERGL WILD-TYPE" "RERGL WILD-TYPE" "RERGL WILD-TYPE" "RERGL WILD-TYPE" 
     TCGA-49-4505      TCGA-49-4506      TCGA-49-4507      TCGA-49-4510 
"RERGL WILD-TYPE" "RERGL WILD-TYPE" "RERGL WILD-TYPE" "RERGL WILD-TYPE" 
     TCGA-49-4512      TCGA-49-4514      TCGA-49-6742      TCGA-49-6743 
"RERGL WILD-TYPE" "RERGL WILD-TYPE" "RERGL WILD-TYPE" "RERGL WILD-TYPE" 
     TCGA-49-6744      TCGA-49-6745      TCGA-50-5044      TCGA-50-5045 
"RERGL WILD-TYPE"   "RERGL MUTATED" "RERGL WILD-TYPE" "RERGL WILD-TYPE" 
     TCGA-50-5049      TCGA-50-5051      TCGA-50-5055      TCGA-50-5066 
"RERGL WILD-TYPE" "RERGL WILD-TYPE" "RERGL WILD-TYPE" "RERGL WILD-TYPE" 
     TCGA-50-5068      TCGA-50-5072      TCGA-50-5930      TCGA-50-5931 
"RERGL WILD-TYPE" "RERGL WILD-TYPE" "RERGL WILD-TYPE" "RERGL WILD-TYPE" 
     TCGA-50-5932      TCGA-50-5933      TCGA-50-5935      TCGA-50-5936 
"RERGL WILD-TYPE" "RERGL WILD-TYPE" "RERGL WILD-TYPE" "RERGL WILD-TYPE" 
     TCGA-50-5939      TCGA-50-5941      TCGA-50-5942      TCGA-50-5944 
"RERGL WILD-TYPE" "RERGL WILD-TYPE" "RERGL WILD-TYPE" "RERGL WILD-TYPE" 
     TCGA-50-5946      TCGA-50-6590      TCGA-50-6591      TCGA-50-6592 
"RERGL WILD-TYPE" "RERGL WILD-TYPE" "RERGL WILD-TYPE" "RERGL WILD-TYPE" 
     TCGA-50-6593      TCGA-50-6594      TCGA-50-6595      TCGA-50-6597 
"RERGL WILD-TYPE" "RERGL WILD-TYPE" "RERGL WILD-TYPE" "RERGL WILD-TYPE" 
     TCGA-55-1592      TCGA-55-1594      TCGA-55-1595      TCGA-55-1596 
"RERGL WILD-TYPE" "RERGL WILD-TYPE" "RERGL WILD-TYPE" "RERGL WILD-TYPE" 
     TCGA-55-5899      TCGA-55-6543      TCGA-55-6642      TCGA-55-6712 
"RERGL WILD-TYPE" "RERGL WILD-TYPE" "RERGL WILD-TYPE" "RERGL WILD-TYPE" 
     TCGA-64-1676      TCGA-64-1677      TCGA-64-1678      TCGA-64-1680 
"RERGL WILD-TYPE" "RERGL WILD-TYPE" "RERGL WILD-TYPE" "RERGL WILD-TYPE" 
     TCGA-64-5774      TCGA-64-5775      TCGA-64-5778      TCGA-64-5779 
"RERGL WILD-TYPE" "RERGL WILD-TYPE" "RERGL WILD-TYPE" "RERGL WILD-TYPE" 
     TCGA-64-5781      TCGA-64-5815      TCGA-67-3770      TCGA-67-3771 
"RERGL WILD-TYPE" "RERGL WILD-TYPE" "RERGL WILD-TYPE" "RERGL WILD-TYPE" 
     TCGA-67-3772      TCGA-67-3773      TCGA-67-3774      TCGA-67-6215 
"RERGL WILD-TYPE" "RERGL WILD-TYPE" "RERGL WILD-TYPE" "RERGL WILD-TYPE" 
     TCGA-67-6216      TCGA-67-6217      TCGA-71-6725      TCGA-73-4658 
"RERGL WILD-TYPE" "RERGL WILD-TYPE" "RERGL WILD-TYPE" "RERGL WILD-TYPE" 
     TCGA-73-4659      TCGA-73-4662      TCGA-73-4666      TCGA-73-4668 
"RERGL WILD-TYPE" "RERGL WILD-TYPE" "RERGL WILD-TYPE" "RERGL WILD-TYPE" 
     TCGA-73-4670      TCGA-73-4675      TCGA-73-4676      TCGA-73-4677 
"RERGL WILD-TYPE" "RERGL WILD-TYPE" "RERGL WILD-TYPE" "RERGL WILD-TYPE" 
     TCGA-91-6828      TCGA-91-6829      TCGA-91-6831      TCGA-91-6835 
"RERGL WILD-TYPE" "RERGL WILD-TYPE" "RERGL WILD-TYPE" "RERGL WILD-TYPE" 
     TCGA-91-6836 
"RERGL WILD-TYPE" 
     TCGA-05-4249      TCGA-05-4250      TCGA-05-4382      TCGA-05-4384 
"RERGL WILD-TYPE" "RERGL WILD-TYPE" "RERGL WILD-TYPE" "RERGL WILD-TYPE" 
     TCGA-05-4390      TCGA-05-4396      TCGA-05-4397      TCGA-05-4398 
"RERGL WILD-TYPE" "RERGL WILD-TYPE" "RERGL WILD-TYPE" "RERGL WILD-TYPE" 
     TCGA-05-4402      TCGA-05-4405      TCGA-05-4415      TCGA-05-4417 
"RERGL WILD-TYPE" "RERGL WILD-TYPE" "RERGL WILD-TYPE" "RERGL WILD-TYPE" 
     TCGA-05-4418      TCGA-05-4420      TCGA-05-4424      TCGA-05-4426 
"RERGL WILD-TYPE" "RERGL WILD-TYPE" "RERGL WILD-TYPE" "RERGL WILD-TYPE" 
     TCGA-05-4427      TCGA-05-4430      TCGA-05-4432      TCGA-05-4433 
"RERGL WILD-TYPE" "RERGL WILD-TYPE" "RERGL WILD-TYPE" "RERGL WILD-TYPE" 
     TCGA-05-4434      TCGA-05-5420      TCGA-05-5423      TCGA-05-5425 
"RERGL WILD-TYPE" "RERGL WILD-TYPE" "RERGL WILD-TYPE"   "RERGL MUTATED" 
     TCGA-05-5429      TCGA-05-5715      TCGA-35-3615      TCGA-35-4122 
"RERGL WILD-TYPE" "RERGL WILD-TYPE" "RERGL WILD-TYPE" "RERGL WILD-TYPE" 
     TCGA-35-4123      TCGA-35-5375      TCGA-38-4625      TCGA-38-4626 
"RERGL WILD-TYPE" "RERGL WILD-TYPE" "RERGL WILD-TYPE"   "RERGL MUTATED" 
     TCGA-38-4627      TCGA-38-4628      TCGA-38-4629      TCGA-38-4630 
"RERGL WILD-TYPE" "RERGL WILD-TYPE" "RERGL WILD-TYPE" "RERGL WILD-TYPE" 
     TCGA-38-4631      TCGA-38-4632      TCGA-38-6178      TCGA-44-2655 
"RERGL WILD-TYPE" "RERGL WILD-TYPE" "RERGL WILD-TYPE" "RERGL WILD-TYPE" 
     TCGA-44-2656      TCGA-44-2657      TCGA-44-2659      TCGA-44-2661 
"RERGL WILD-TYPE" "RERGL WILD-TYPE" "RERGL WILD-TYPE" "RERGL WILD-TYPE" 
     TCGA-44-2662      TCGA-44-2665      TCGA-44-2666      TCGA-44-2668 
"RERGL WILD-TYPE" "RERGL WILD-TYPE" "RERGL WILD-TYPE" "RERGL WILD-TYPE" 
     TCGA-44-3396      TCGA-44-3398      TCGA-44-3918      TCGA-44-3919 
"RERGL WILD-TYPE" "RERGL WILD-TYPE" "RERGL WILD-TYPE" "RERGL WILD-TYPE" 
     TCGA-44-4112      TCGA-44-5643      TCGA-44-5645      TCGA-44-6144 
"RERGL WILD-TYPE" "RERGL WILD-TYPE" "RERGL WILD-TYPE" "RERGL WILD-TYPE" 
     TCGA-44-6145      TCGA-44-6146      TCGA-44-6147      TCGA-44-6148 
"RERGL WILD-TYPE" "RERGL WILD-TYPE" "RERGL WILD-TYPE" "RERGL WILD-TYPE" 
     TCGA-44-6774      TCGA-44-6775      TCGA-44-6776      TCGA-44-6777 
"RERGL WILD-TYPE" "RERGL WILD-TYPE"   "RERGL MUTATED" "RERGL WILD-TYPE" 
     TCGA-44-6778      TCGA-44-6779      TCGA-49-4486      TCGA-49-4487 
"RERGL WILD-TYPE" "RERGL WILD-TYPE" "RERGL WILD-TYPE" "RERGL WILD-TYPE" 
     TCGA-49-4488      TCGA-49-4490      TCGA-49-4494      TCGA-49-4501 
"RERGL WILD-TYPE" "RERGL WILD-TYPE" "RERGL WILD-TYPE" "RERGL WILD-TYPE" 
     TCGA-49-4505      TCGA-49-4506      TCGA-49-4507      TCGA-49-4510 
"RERGL WILD-TYPE" "RERGL WILD-TYPE" "RERGL WILD-TYPE" "RERGL WILD-TYPE" 
     TCGA-49-4512      TCGA-49-4514      TCGA-49-6742      TCGA-49-6743 
"RERGL WILD-TYPE" "RERGL WILD-TYPE" "RERGL WILD-TYPE" "RERGL WILD-TYPE" 
     TCGA-49-6744      TCGA-49-6745      TCGA-50-5044      TCGA-50-5045 
"RERGL WILD-TYPE"   "RERGL MUTATED" "RERGL WILD-TYPE" "RERGL WILD-TYPE" 
     TCGA-50-5049      TCGA-50-5051      TCGA-50-5055      TCGA-50-5066 
"RERGL WILD-TYPE" "RERGL WILD-TYPE" "RERGL WILD-TYPE" "RERGL WILD-TYPE" 
     TCGA-50-5068      TCGA-50-5072      TCGA-50-5930      TCGA-50-5931 
"RERGL WILD-TYPE" "RERGL WILD-TYPE" "RERGL WILD-TYPE" "RERGL WILD-TYPE" 
     TCGA-50-5932      TCGA-50-5933      TCGA-50-5935      TCGA-50-5936 
"RERGL WILD-TYPE" "RERGL WILD-TYPE" "RERGL WILD-TYPE" "RERGL WILD-TYPE" 
     TCGA-50-5939      TCGA-50-5941      TCGA-50-5942      TCGA-50-5944 
"RERGL WILD-TYPE" "RERGL WILD-TYPE" "RERGL WILD-TYPE" "RERGL WILD-TYPE" 
     TCGA-50-5946      TCGA-50-6590      TCGA-50-6591      TCGA-50-6592 
"RERGL WILD-TYPE" "RERGL WILD-TYPE" "RERGL WILD-TYPE" "RERGL WILD-TYPE" 
     TCGA-50-6593      TCGA-50-6594      TCGA-50-6595      TCGA-50-6597 
"RERGL WILD-TYPE" "RERGL WILD-TYPE" "RERGL WILD-TYPE" "RERGL WILD-TYPE" 
     TCGA-55-1592      TCGA-55-1594      TCGA-55-1595      TCGA-55-1596 
"RERGL WILD-TYPE" "RERGL WILD-TYPE" "RERGL WILD-TYPE" "RERGL WILD-TYPE" 
     TCGA-55-5899      TCGA-55-6543      TCGA-55-6642      TCGA-55-6712 
"RERGL WILD-TYPE" "RERGL WILD-TYPE" "RERGL WILD-TYPE" "RERGL WILD-TYPE" 
     TCGA-64-1676      TCGA-64-1677      TCGA-64-1678      TCGA-64-1680 
"RERGL WILD-TYPE" "RERGL WILD-TYPE" "RERGL WILD-TYPE" "RERGL WILD-TYPE" 
     TCGA-64-5774      TCGA-64-5775      TCGA-64-5778      TCGA-64-5779 
"RERGL WILD-TYPE" "RERGL WILD-TYPE" "RERGL WILD-TYPE" "RERGL WILD-TYPE" 
     TCGA-64-5781      TCGA-64-5815      TCGA-67-3770      TCGA-67-3771 
"RERGL WILD-TYPE" "RERGL WILD-TYPE" "RERGL WILD-TYPE" "RERGL WILD-TYPE" 
     TCGA-67-3772      TCGA-67-3773      TCGA-67-3774      TCGA-67-6215 
"RERGL WILD-TYPE" "RERGL WILD-TYPE" "RERGL WILD-TYPE" "RERGL WILD-TYPE" 
     TCGA-67-6216      TCGA-67-6217      TCGA-71-6725      TCGA-73-4658 
"RERGL WILD-TYPE" "RERGL WILD-TYPE" "RERGL WILD-TYPE" "RERGL WILD-TYPE" 
     TCGA-73-4659      TCGA-73-4662      TCGA-73-4666      TCGA-73-4668 
"RERGL WILD-TYPE" "RERGL WILD-TYPE" "RERGL WILD-TYPE" "RERGL WILD-TYPE" 
     TCGA-73-4670      TCGA-73-4675      TCGA-73-4676      TCGA-73-4677 
"RERGL WILD-TYPE" "RERGL WILD-TYPE" "RERGL WILD-TYPE" "RERGL WILD-TYPE" 
     TCGA-91-6828      TCGA-91-6829      TCGA-91-6831      TCGA-91-6835 
"RERGL WILD-TYPE" "RERGL WILD-TYPE" "RERGL WILD-TYPE" "RERGL WILD-TYPE" 
     TCGA-91-6836 
"RERGL WILD-TYPE" 
[1] "hr="     "8.5e+07"
D235V2, continuous
D235V3, binary
[1] "tbl2"
                 cls
clus              [,1] [,2]
  RERGL MUTATED      3    2
  RERGL WILD-TYPE   90   77
        clus
vv       RERGL MUTATED RERGL WILD-TYPE
  FEMALE             3              90
  MALE               2              77
D235V4, continuous
D235V5, multiclass
D235V6, multiclass
    clus
vv   RERGL MUTATED RERGL WILD-TYPE
  T1             1              40
  T2             4             104
  T3             0              14
  T4             0               8
D235V7, multiclass
       clus
vv      RERGL MUTATED RERGL WILD-TYPE
  N0                3              92
  N1                1              36
  N2+N3             1              34
D235V8, multiclass
    clus
vv   RERGL MUTATED RERGL WILD-TYPE
  M0             3             134
  M1             0               9
  MX             2              20
D235V9, multiclass
     clus
vv    RERGL MUTATED RERGL WILD-TYPE
  I               2              86
  II              2              31
  III             1              38
  IV              0               9
D235V10, binary
[1] "tbl2"
                 cls
clus              [,1] [,2]
  RERGL MUTATED      0    5
  RERGL WILD-TYPE   16  151
     clus
vv    RERGL MUTATED RERGL WILD-TYPE
  NO              0              16
  YES             5             151
D235V11, continuous
D235V12, continuous
[1] "Remove cluster labels:" "RERGL MUTATED"         
clus
  RERGL MUTATED RERGL WILD-TYPE 
              2              80 
     TCGA-05-4384      TCGA-05-4390      TCGA-05-4396      TCGA-05-4403 
"RERGL WILD-TYPE" "RERGL WILD-TYPE" "RERGL WILD-TYPE" "RERGL WILD-TYPE" 
     TCGA-05-4405      TCGA-05-4410      TCGA-05-4415      TCGA-05-4417 
"RERGL WILD-TYPE" "RERGL WILD-TYPE" "RERGL WILD-TYPE" "RERGL WILD-TYPE" 
     TCGA-05-4424      TCGA-05-4427      TCGA-05-4433      TCGA-05-5420 
"RERGL WILD-TYPE" "RERGL WILD-TYPE" "RERGL WILD-TYPE" "RERGL WILD-TYPE" 
     TCGA-05-5423      TCGA-05-5428      TCGA-35-4122      TCGA-35-4123 
"RERGL WILD-TYPE" "RERGL WILD-TYPE" "RERGL WILD-TYPE" "RERGL WILD-TYPE" 
     TCGA-35-5375      TCGA-38-4629      TCGA-38-4632      TCGA-44-2655 
"RERGL WILD-TYPE" "RERGL WILD-TYPE" "RERGL WILD-TYPE" "RERGL WILD-TYPE" 
     TCGA-44-2656      TCGA-44-2657      TCGA-44-2659      TCGA-44-2662 
"RERGL WILD-TYPE" "RERGL WILD-TYPE" "RERGL WILD-TYPE" "RERGL WILD-TYPE" 
     TCGA-44-2668      TCGA-44-3398      TCGA-44-3918      TCGA-44-4112 
"RERGL WILD-TYPE" "RERGL WILD-TYPE" "RERGL WILD-TYPE" "RERGL WILD-TYPE" 
     TCGA-44-5645      TCGA-44-6145      TCGA-44-6146      TCGA-44-6147 
"RERGL WILD-TYPE" "RERGL WILD-TYPE" "RERGL WILD-TYPE" "RERGL WILD-TYPE" 
     TCGA-44-6148      TCGA-44-6775      TCGA-44-6777      TCGA-44-6778 
"RERGL WILD-TYPE" "RERGL WILD-TYPE" "RERGL WILD-TYPE" "RERGL WILD-TYPE" 
     TCGA-44-6779      TCGA-49-4486      TCGA-49-4488      TCGA-49-4494 
"RERGL WILD-TYPE" "RERGL WILD-TYPE" "RERGL WILD-TYPE" "RERGL WILD-TYPE" 
     TCGA-49-4505      TCGA-49-4507      TCGA-50-5051      TCGA-50-5072 
"RERGL WILD-TYPE" "RERGL WILD-TYPE" "RERGL WILD-TYPE" "RERGL WILD-TYPE" 
     TCGA-50-5939      TCGA-50-5942      TCGA-50-5946      TCGA-50-6590 
"RERGL WILD-TYPE" "RERGL WILD-TYPE" "RERGL WILD-TYPE" "RERGL WILD-TYPE" 
     TCGA-50-6594      TCGA-50-6595      TCGA-55-1592      TCGA-55-1595 
"RERGL WILD-TYPE" "RERGL WILD-TYPE" "RERGL WILD-TYPE" "RERGL WILD-TYPE" 
     TCGA-55-6543      TCGA-55-6712      TCGA-64-1678      TCGA-64-1680 
"RERGL WILD-TYPE" "RERGL WILD-TYPE" "RERGL WILD-TYPE" "RERGL WILD-TYPE" 
     TCGA-64-5774      TCGA-64-5778      TCGA-64-5779      TCGA-64-5781 
"RERGL WILD-TYPE" "RERGL WILD-TYPE" "RERGL WILD-TYPE" "RERGL WILD-TYPE" 
     TCGA-64-5815      TCGA-67-6217      TCGA-73-4659      TCGA-73-4662 
"RERGL WILD-TYPE" "RERGL WILD-TYPE" "RERGL WILD-TYPE" "RERGL WILD-TYPE" 
     TCGA-73-4666      TCGA-73-4668      TCGA-73-4670      TCGA-73-4675 
"RERGL WILD-TYPE" "RERGL WILD-TYPE" "RERGL WILD-TYPE" "RERGL WILD-TYPE" 
     TCGA-73-4676      TCGA-73-4677      TCGA-75-5122      TCGA-75-5125 
"RERGL WILD-TYPE" "RERGL WILD-TYPE" "RERGL WILD-TYPE" "RERGL WILD-TYPE" 
     TCGA-75-5126      TCGA-75-5146      TCGA-75-6206      TCGA-75-6207 
"RERGL WILD-TYPE" "RERGL WILD-TYPE" "RERGL WILD-TYPE" "RERGL WILD-TYPE" 
     TCGA-80-5611      TCGA-91-6828      TCGA-91-6829      TCGA-91-6835 
"RERGL WILD-TYPE" "RERGL WILD-TYPE" "RERGL WILD-TYPE" "RERGL WILD-TYPE" 
D235V13, multiclass
                                             clus
vv                                            RERGL MUTATED RERGL WILD-TYPE
  CURRENT REFORMED SMOKER FOR < OR = 15 YEARS             2              60
  CURRENT REFORMED SMOKER FOR > 15 YEARS                  1              45
  CURRENT SMOKER                                          2              26
  LIFELONG NON-SMOKER                                     0              24
D235V14, continuous

Clustering(236) Variable = KLHL4 MUTATION ANALYSIS
D236V1, survival
                 sevent
clus2              0  1
  KLHL4 MUTATED    6  2
  KLHL4 WILD-TYPE 93 48
  KLHL4 MUTATED KLHL4 WILD-TYPE 
              8             141 
  KLHL4 MUTATED KLHL4 WILD-TYPE 
              2              48 
$`KLHL4 MUTATED`
TCGA-05-4405 TCGA-05-5423 TCGA-38-4629 TCGA-44-6775 TCGA-50-5933 TCGA-55-6712 
       20.05         4.96        28.37         2.70        77.88         0.79 
TCGA-64-5815 TCGA-67-3771 
        7.33         1.97 

$`KLHL4 WILD-TYPE`
TCGA-05-4249 TCGA-05-4250 TCGA-05-4382 TCGA-05-4384 TCGA-05-4390 TCGA-05-4396 
       38.07         3.98        19.92        14.01        37.02         9.96 
TCGA-05-4397 TCGA-05-4398 TCGA-05-4402 TCGA-05-4415 TCGA-05-4417 TCGA-05-4418 
       24.03        47.05         8.02         2.96        14.93         8.98 
TCGA-05-4420 TCGA-05-4424 TCGA-05-4426 TCGA-05-4427 TCGA-05-4430 TCGA-05-4432 
       29.95        30.02        26.01        26.01        25.02        25.02 
TCGA-05-4433 TCGA-05-4434 TCGA-05-5420 TCGA-05-5425 TCGA-05-5429 TCGA-05-5715 
       24.00        15.02         1.02         2.96         0.99         2.04 
TCGA-35-3615 TCGA-35-4122 TCGA-35-4123 TCGA-35-5375 TCGA-38-4625 TCGA-38-4626 
        0.46         7.36         5.95         8.68        47.61        85.32 
TCGA-38-4627 TCGA-38-4628 TCGA-38-4630 TCGA-38-4631 TCGA-38-4632 TCGA-38-6178 
       37.71        49.02        35.28        11.64        44.61         5.19 
TCGA-44-2655 TCGA-44-2656 TCGA-44-2657 TCGA-44-2659 TCGA-44-2661 TCGA-44-2662 
       18.87        19.10        13.15        17.39         3.39        15.78 
TCGA-44-2665 TCGA-44-2666 TCGA-44-2668 TCGA-44-3396 TCGA-44-3398 TCGA-44-3918 
       13.15         3.19         8.09        10.22         8.32         6.44 
TCGA-44-3919 TCGA-44-4112 TCGA-44-5643 TCGA-44-5645 TCGA-44-6144 TCGA-44-6145 
        6.21         4.60         3.48         6.84         0.30         3.35 
TCGA-44-6146 TCGA-44-6147 TCGA-44-6148 TCGA-44-6774 TCGA-44-6776 TCGA-44-6777 
        9.93         7.76         3.12         5.42        63.72        32.45 
TCGA-44-6778 TCGA-44-6779 TCGA-49-4486 TCGA-49-4487 TCGA-49-4488 TCGA-49-4490 
       36.49        16.41        76.21        28.11        28.57        12.66 
TCGA-49-4494 TCGA-49-4501 TCGA-49-4505 TCGA-49-4506 TCGA-49-4507 TCGA-49-4510 
       35.54        46.72        14.07        32.84         8.81        29.46 
TCGA-49-4512 TCGA-49-4514 TCGA-49-6742 TCGA-49-6743 TCGA-49-6744 TCGA-49-6745 
       29.75        43.20        15.02        12.13        12.99         4.93 
TCGA-50-5044 TCGA-50-5045 TCGA-50-5049 TCGA-50-5051 TCGA-50-5055 TCGA-50-5066 
       20.48        71.47        48.82        14.96        25.81         9.76 
TCGA-50-5068 TCGA-50-5072 TCGA-50-5930 TCGA-50-5931 TCGA-50-5932 TCGA-50-5935 
       49.28         8.05         9.27         8.78        35.87        21.47 
TCGA-50-5936 TCGA-50-5939 TCGA-50-5941 TCGA-50-5942 TCGA-50-5944 TCGA-50-5946 
        8.45        15.12         9.37         4.44        12.26        11.47 
TCGA-50-6590 TCGA-50-6591 TCGA-50-6592 TCGA-50-6593 TCGA-50-6594 TCGA-50-6595 
       42.31         3.88        25.51        11.05        12.16         6.21 
TCGA-50-6597 TCGA-55-1592 TCGA-55-1594 TCGA-55-1595 TCGA-55-1596 TCGA-55-5899 
       33.37        23.05        38.73        48.62        45.17         2.86 
TCGA-55-6543 TCGA-55-6642 TCGA-64-1676 TCGA-64-1677 TCGA-64-1678 TCGA-64-1680 
        0.07        32.61        56.81        20.65        39.09        37.02 
TCGA-64-5774 TCGA-64-5775 TCGA-64-5778 TCGA-64-5779 TCGA-64-5781 TCGA-67-3770 
       83.84         0.10        30.44        16.67        39.52         0.99 
TCGA-67-3772 TCGA-67-3773 TCGA-67-3774 TCGA-67-6215 TCGA-67-6216 TCGA-67-6217 
        0.59         2.04         0.59         0.89         0.69        13.87 
TCGA-71-6725 TCGA-73-4658 TCGA-73-4659 TCGA-73-4662 TCGA-73-4666 TCGA-73-4668 
        2.01        52.57        23.38        29.95        20.28        15.35 
TCGA-73-4670 TCGA-73-4675 TCGA-73-4676 TCGA-73-4677 TCGA-91-6828 TCGA-91-6829 
        0.46         1.32         4.01         1.25         1.22        41.33 
TCGA-91-6831 TCGA-91-6835 TCGA-91-6836 
        1.28         1.15         0.36 

  KLHL4 MUTATED KLHL4 WILD-TYPE 
           0.79            0.07 
  KLHL4 MUTATED KLHL4 WILD-TYPE 
          77.88           85.32 
  KLHL4 MUTATED KLHL4 WILD-TYPE 
          6.145          14.010 
[1] "0.8 - 77.9 (6.1)"  "0.1 - 85.3 (14.0)"
     TCGA-05-4249      TCGA-05-4250      TCGA-05-4382      TCGA-05-4384 
"KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE" 
     TCGA-05-4390      TCGA-05-4396      TCGA-05-4397      TCGA-05-4398 
"KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE" 
     TCGA-05-4402      TCGA-05-4405      TCGA-05-4415      TCGA-05-4417 
"KLHL4 WILD-TYPE"   "KLHL4 MUTATED" "KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE" 
     TCGA-05-4418      TCGA-05-4420      TCGA-05-4424      TCGA-05-4426 
"KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE" 
     TCGA-05-4427      TCGA-05-4430      TCGA-05-4432      TCGA-05-4433 
"KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE" 
     TCGA-05-4434      TCGA-05-5420      TCGA-05-5423      TCGA-05-5425 
"KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE"   "KLHL4 MUTATED" "KLHL4 WILD-TYPE" 
     TCGA-05-5429      TCGA-05-5715      TCGA-35-3615      TCGA-35-4122 
"KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE" 
     TCGA-35-4123      TCGA-35-5375      TCGA-38-4625      TCGA-38-4626 
"KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE" 
     TCGA-38-4627      TCGA-38-4628      TCGA-38-4629      TCGA-38-4630 
"KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE"   "KLHL4 MUTATED" "KLHL4 WILD-TYPE" 
     TCGA-38-4631      TCGA-38-4632      TCGA-38-6178      TCGA-44-2655 
"KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE" 
     TCGA-44-2656      TCGA-44-2657      TCGA-44-2659      TCGA-44-2661 
"KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE" 
     TCGA-44-2662      TCGA-44-2665      TCGA-44-2666      TCGA-44-2668 
"KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE" 
     TCGA-44-3396      TCGA-44-3398      TCGA-44-3918      TCGA-44-3919 
"KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE" 
     TCGA-44-4112      TCGA-44-5643      TCGA-44-5645      TCGA-44-6144 
"KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE" 
     TCGA-44-6145      TCGA-44-6146      TCGA-44-6147      TCGA-44-6148 
"KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE" 
     TCGA-44-6774      TCGA-44-6775      TCGA-44-6776      TCGA-44-6777 
"KLHL4 WILD-TYPE"   "KLHL4 MUTATED" "KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE" 
     TCGA-44-6778      TCGA-44-6779      TCGA-49-4486      TCGA-49-4487 
"KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE" 
     TCGA-49-4488      TCGA-49-4490      TCGA-49-4494      TCGA-49-4501 
"KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE" 
     TCGA-49-4505      TCGA-49-4506      TCGA-49-4507      TCGA-49-4510 
"KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE" 
     TCGA-49-4512      TCGA-49-4514      TCGA-49-6742      TCGA-49-6743 
"KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE" 
     TCGA-49-6744      TCGA-49-6745      TCGA-50-5044      TCGA-50-5045 
"KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE" 
     TCGA-50-5049      TCGA-50-5051      TCGA-50-5055      TCGA-50-5066 
"KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE" 
     TCGA-50-5068      TCGA-50-5072      TCGA-50-5930      TCGA-50-5931 
"KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE" 
     TCGA-50-5932      TCGA-50-5933      TCGA-50-5935      TCGA-50-5936 
"KLHL4 WILD-TYPE"   "KLHL4 MUTATED" "KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE" 
     TCGA-50-5939      TCGA-50-5941      TCGA-50-5942      TCGA-50-5944 
"KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE" 
     TCGA-50-5946      TCGA-50-6590      TCGA-50-6591      TCGA-50-6592 
"KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE" 
     TCGA-50-6593      TCGA-50-6594      TCGA-50-6595      TCGA-50-6597 
"KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE" 
     TCGA-55-1592      TCGA-55-1594      TCGA-55-1595      TCGA-55-1596 
"KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE" 
     TCGA-55-5899      TCGA-55-6543      TCGA-55-6642      TCGA-55-6712 
"KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE"   "KLHL4 MUTATED" 
     TCGA-64-1676      TCGA-64-1677      TCGA-64-1678      TCGA-64-1680 
"KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE" 
     TCGA-64-5774      TCGA-64-5775      TCGA-64-5778      TCGA-64-5779 
"KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE" 
     TCGA-64-5781      TCGA-64-5815      TCGA-67-3770      TCGA-67-3771 
"KLHL4 WILD-TYPE"   "KLHL4 MUTATED" "KLHL4 WILD-TYPE"   "KLHL4 MUTATED" 
     TCGA-67-3772      TCGA-67-3773      TCGA-67-3774      TCGA-67-6215 
"KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE" 
     TCGA-67-6216      TCGA-67-6217      TCGA-71-6725      TCGA-73-4658 
"KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE" 
     TCGA-73-4659      TCGA-73-4662      TCGA-73-4666      TCGA-73-4668 
"KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE" 
     TCGA-73-4670      TCGA-73-4675      TCGA-73-4676      TCGA-73-4677 
"KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE" 
     TCGA-91-6828      TCGA-91-6829      TCGA-91-6831      TCGA-91-6835 
"KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE" 
     TCGA-91-6836 
"KLHL4 WILD-TYPE" 
     TCGA-05-4249      TCGA-05-4250      TCGA-05-4382      TCGA-05-4384 
"KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE" 
     TCGA-05-4390      TCGA-05-4396      TCGA-05-4397      TCGA-05-4398 
"KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE" 
     TCGA-05-4402      TCGA-05-4405      TCGA-05-4415      TCGA-05-4417 
"KLHL4 WILD-TYPE"   "KLHL4 MUTATED" "KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE" 
     TCGA-05-4418      TCGA-05-4420      TCGA-05-4424      TCGA-05-4426 
"KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE" 
     TCGA-05-4427      TCGA-05-4430      TCGA-05-4432      TCGA-05-4433 
"KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE" 
     TCGA-05-4434      TCGA-05-5420      TCGA-05-5423      TCGA-05-5425 
"KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE"   "KLHL4 MUTATED" "KLHL4 WILD-TYPE" 
     TCGA-05-5429      TCGA-05-5715      TCGA-35-3615      TCGA-35-4122 
"KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE" 
     TCGA-35-4123      TCGA-35-5375      TCGA-38-4625      TCGA-38-4626 
"KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE" 
     TCGA-38-4627      TCGA-38-4628      TCGA-38-4629      TCGA-38-4630 
"KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE"   "KLHL4 MUTATED" "KLHL4 WILD-TYPE" 
     TCGA-38-4631      TCGA-38-4632      TCGA-38-6178      TCGA-44-2655 
"KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE" 
     TCGA-44-2656      TCGA-44-2657      TCGA-44-2659      TCGA-44-2661 
"KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE" 
     TCGA-44-2662      TCGA-44-2665      TCGA-44-2666      TCGA-44-2668 
"KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE" 
     TCGA-44-3396      TCGA-44-3398      TCGA-44-3918      TCGA-44-3919 
"KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE" 
     TCGA-44-4112      TCGA-44-5643      TCGA-44-5645      TCGA-44-6144 
"KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE" 
     TCGA-44-6145      TCGA-44-6146      TCGA-44-6147      TCGA-44-6148 
"KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE" 
     TCGA-44-6774      TCGA-44-6775      TCGA-44-6776      TCGA-44-6777 
"KLHL4 WILD-TYPE"   "KLHL4 MUTATED" "KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE" 
     TCGA-44-6778      TCGA-44-6779      TCGA-49-4486      TCGA-49-4487 
"KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE" 
     TCGA-49-4488      TCGA-49-4490      TCGA-49-4494      TCGA-49-4501 
"KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE" 
     TCGA-49-4505      TCGA-49-4506      TCGA-49-4507      TCGA-49-4510 
"KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE" 
     TCGA-49-4512      TCGA-49-4514      TCGA-49-6742      TCGA-49-6743 
"KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE" 
     TCGA-49-6744      TCGA-49-6745      TCGA-50-5044      TCGA-50-5045 
"KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE" 
     TCGA-50-5049      TCGA-50-5051      TCGA-50-5055      TCGA-50-5066 
"KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE" 
     TCGA-50-5068      TCGA-50-5072      TCGA-50-5930      TCGA-50-5931 
"KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE" 
     TCGA-50-5932      TCGA-50-5933      TCGA-50-5935      TCGA-50-5936 
"KLHL4 WILD-TYPE"   "KLHL4 MUTATED" "KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE" 
     TCGA-50-5939      TCGA-50-5941      TCGA-50-5942      TCGA-50-5944 
"KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE" 
     TCGA-50-5946      TCGA-50-6590      TCGA-50-6591      TCGA-50-6592 
"KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE" 
     TCGA-50-6593      TCGA-50-6594      TCGA-50-6595      TCGA-50-6597 
"KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE" 
     TCGA-55-1592      TCGA-55-1594      TCGA-55-1595      TCGA-55-1596 
"KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE" 
     TCGA-55-5899      TCGA-55-6543      TCGA-55-6642      TCGA-55-6712 
"KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE"   "KLHL4 MUTATED" 
     TCGA-64-1676      TCGA-64-1677      TCGA-64-1678      TCGA-64-1680 
"KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE" 
     TCGA-64-5774      TCGA-64-5775      TCGA-64-5778      TCGA-64-5779 
"KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE" 
     TCGA-64-5781      TCGA-64-5815      TCGA-67-3770      TCGA-67-3771 
"KLHL4 WILD-TYPE"   "KLHL4 MUTATED" "KLHL4 WILD-TYPE"   "KLHL4 MUTATED" 
     TCGA-67-3772      TCGA-67-3773      TCGA-67-3774      TCGA-67-6215 
"KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE" 
     TCGA-67-6216      TCGA-67-6217      TCGA-71-6725      TCGA-73-4658 
"KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE" 
     TCGA-73-4659      TCGA-73-4662      TCGA-73-4666      TCGA-73-4668 
"KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE" 
     TCGA-73-4670      TCGA-73-4675      TCGA-73-4676      TCGA-73-4677 
"KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE" 
     TCGA-91-6828      TCGA-91-6829      TCGA-91-6831      TCGA-91-6835 
"KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE" 
     TCGA-91-6836 
"KLHL4 WILD-TYPE" 
     TCGA-05-4249      TCGA-05-4250      TCGA-05-4382      TCGA-05-4384 
"KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE" 
     TCGA-05-4390      TCGA-05-4396      TCGA-05-4397      TCGA-05-4398 
"KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE" 
     TCGA-05-4402      TCGA-05-4405      TCGA-05-4415      TCGA-05-4417 
"KLHL4 WILD-TYPE"   "KLHL4 MUTATED" "KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE" 
     TCGA-05-4418      TCGA-05-4420      TCGA-05-4424      TCGA-05-4426 
"KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE" 
     TCGA-05-4427      TCGA-05-4430      TCGA-05-4432      TCGA-05-4433 
"KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE" 
     TCGA-05-4434      TCGA-05-5420      TCGA-05-5423      TCGA-05-5425 
"KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE"   "KLHL4 MUTATED" "KLHL4 WILD-TYPE" 
     TCGA-05-5429      TCGA-05-5715      TCGA-35-3615      TCGA-35-4122 
"KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE" 
     TCGA-35-4123      TCGA-35-5375      TCGA-38-4625      TCGA-38-4626 
"KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE" 
     TCGA-38-4627      TCGA-38-4628      TCGA-38-4629      TCGA-38-4630 
"KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE"   "KLHL4 MUTATED" "KLHL4 WILD-TYPE" 
     TCGA-38-4631      TCGA-38-4632      TCGA-38-6178      TCGA-44-2655 
"KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE" 
     TCGA-44-2656      TCGA-44-2657      TCGA-44-2659      TCGA-44-2661 
"KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE" 
     TCGA-44-2662      TCGA-44-2665      TCGA-44-2666      TCGA-44-2668 
"KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE" 
     TCGA-44-3396      TCGA-44-3398      TCGA-44-3918      TCGA-44-3919 
"KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE" 
     TCGA-44-4112      TCGA-44-5643      TCGA-44-5645      TCGA-44-6144 
"KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE" 
     TCGA-44-6145      TCGA-44-6146      TCGA-44-6147      TCGA-44-6148 
"KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE" 
     TCGA-44-6774      TCGA-44-6775      TCGA-44-6776      TCGA-44-6777 
"KLHL4 WILD-TYPE"   "KLHL4 MUTATED" "KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE" 
     TCGA-44-6778      TCGA-44-6779      TCGA-49-4486      TCGA-49-4487 
"KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE" 
     TCGA-49-4488      TCGA-49-4490      TCGA-49-4494      TCGA-49-4501 
"KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE" 
     TCGA-49-4505      TCGA-49-4506      TCGA-49-4507      TCGA-49-4510 
"KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE" 
     TCGA-49-4512      TCGA-49-4514      TCGA-49-6742      TCGA-49-6743 
"KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE" 
     TCGA-49-6744      TCGA-49-6745      TCGA-50-5044      TCGA-50-5045 
"KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE" 
     TCGA-50-5049      TCGA-50-5051      TCGA-50-5055      TCGA-50-5066 
"KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE" 
     TCGA-50-5068      TCGA-50-5072      TCGA-50-5930      TCGA-50-5931 
"KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE" 
     TCGA-50-5932      TCGA-50-5933      TCGA-50-5935      TCGA-50-5936 
"KLHL4 WILD-TYPE"   "KLHL4 MUTATED" "KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE" 
     TCGA-50-5939      TCGA-50-5941      TCGA-50-5942      TCGA-50-5944 
"KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE" 
     TCGA-50-5946      TCGA-50-6590      TCGA-50-6591      TCGA-50-6592 
"KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE" 
     TCGA-50-6593      TCGA-50-6594      TCGA-50-6595      TCGA-50-6597 
"KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE" 
     TCGA-55-1592      TCGA-55-1594      TCGA-55-1595      TCGA-55-1596 
"KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE" 
     TCGA-55-5899      TCGA-55-6543      TCGA-55-6642      TCGA-55-6712 
"KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE"   "KLHL4 MUTATED" 
     TCGA-64-1676      TCGA-64-1677      TCGA-64-1678      TCGA-64-1680 
"KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE" 
     TCGA-64-5774      TCGA-64-5775      TCGA-64-5778      TCGA-64-5779 
"KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE" 
     TCGA-64-5781      TCGA-64-5815      TCGA-67-3770      TCGA-67-3771 
"KLHL4 WILD-TYPE"   "KLHL4 MUTATED" "KLHL4 WILD-TYPE"   "KLHL4 MUTATED" 
     TCGA-67-3772      TCGA-67-3773      TCGA-67-3774      TCGA-67-6215 
"KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE" 
     TCGA-67-6216      TCGA-67-6217      TCGA-71-6725      TCGA-73-4658 
"KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE" 
     TCGA-73-4659      TCGA-73-4662      TCGA-73-4666      TCGA-73-4668 
"KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE" 
     TCGA-73-4670      TCGA-73-4675      TCGA-73-4676      TCGA-73-4677 
"KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE" 
     TCGA-91-6828      TCGA-91-6829      TCGA-91-6831      TCGA-91-6835 
"KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE" 
     TCGA-91-6836 
"KLHL4 WILD-TYPE" 
[1] "hr=" "1.5"
D236V2, continuous
D236V3, binary
[1] "tbl2"
                 cls
clus              [,1] [,2]
  KLHL4 MUTATED      3    7
  KLHL4 WILD-TYPE   90   72
        clus
vv       KLHL4 MUTATED KLHL4 WILD-TYPE
  FEMALE             3              90
  MALE               7              72
D236V4, continuous
D236V5, multiclass
D236V6, multiclass
    clus
vv   KLHL4 MUTATED KLHL4 WILD-TYPE
  T1             1              40
  T2             7             101
  T3             1              13
  T4             1               7
D236V7, multiclass
       clus
vv      KLHL4 MUTATED KLHL4 WILD-TYPE
  N0                6              89
  N1                3              34
  N2+N3             1              34
D236V8, multiclass
    clus
vv   KLHL4 MUTATED KLHL4 WILD-TYPE
  M0             8             129
  M1             0               9
  MX             2              20
D236V9, multiclass
     clus
vv    KLHL4 MUTATED KLHL4 WILD-TYPE
  I               5              83
  II              3              30
  III             1              38
  IV              0               9
D236V10, binary
[1] "tbl2"
                 cls
clus              [,1] [,2]
  KLHL4 MUTATED      1    9
  KLHL4 WILD-TYPE   15  147
     clus
vv    KLHL4 MUTATED KLHL4 WILD-TYPE
  NO              1              15
  YES             9             147
D236V11, continuous
D236V12, continuous
D236V13, multiclass
                                             clus
vv                                            KLHL4 MUTATED KLHL4 WILD-TYPE
  CURRENT REFORMED SMOKER FOR < OR = 15 YEARS             6              56
  CURRENT REFORMED SMOKER FOR > 15 YEARS                  3              43
  CURRENT SMOKER                                          0              28
  LIFELONG NON-SMOKER                                     0              24
D236V14, continuous

Clustering(237) Variable = OLAH MUTATION ANALYSIS
D237V1, survival
                sevent
clus2             0  1
  OLAH MUTATED    5  1
  OLAH WILD-TYPE 94 49
  OLAH MUTATED OLAH WILD-TYPE 
             6            143 
  OLAH MUTATED OLAH WILD-TYPE 
             1             49 
$`OLAH MUTATED`
TCGA-05-4390 TCGA-05-4396 TCGA-55-5899 TCGA-64-1678 TCGA-64-5779 TCGA-67-3771 
       37.02         9.96         2.86        39.09        16.67         1.97 

$`OLAH WILD-TYPE`
TCGA-05-4249 TCGA-05-4250 TCGA-05-4382 TCGA-05-4384 TCGA-05-4397 TCGA-05-4398 
       38.07         3.98        19.92        14.01        24.03        47.05 
TCGA-05-4402 TCGA-05-4405 TCGA-05-4415 TCGA-05-4417 TCGA-05-4418 TCGA-05-4420 
        8.02        20.05         2.96        14.93         8.98        29.95 
TCGA-05-4424 TCGA-05-4426 TCGA-05-4427 TCGA-05-4430 TCGA-05-4432 TCGA-05-4433 
       30.02        26.01        26.01        25.02        25.02        24.00 
TCGA-05-4434 TCGA-05-5420 TCGA-05-5423 TCGA-05-5425 TCGA-05-5429 TCGA-05-5715 
       15.02         1.02         4.96         2.96         0.99         2.04 
TCGA-35-3615 TCGA-35-4122 TCGA-35-4123 TCGA-35-5375 TCGA-38-4625 TCGA-38-4626 
        0.46         7.36         5.95         8.68        47.61        85.32 
TCGA-38-4627 TCGA-38-4628 TCGA-38-4629 TCGA-38-4630 TCGA-38-4631 TCGA-38-4632 
       37.71        49.02        28.37        35.28        11.64        44.61 
TCGA-38-6178 TCGA-44-2655 TCGA-44-2656 TCGA-44-2657 TCGA-44-2659 TCGA-44-2661 
        5.19        18.87        19.10        13.15        17.39         3.39 
TCGA-44-2662 TCGA-44-2665 TCGA-44-2666 TCGA-44-2668 TCGA-44-3396 TCGA-44-3398 
       15.78        13.15         3.19         8.09        10.22         8.32 
TCGA-44-3918 TCGA-44-3919 TCGA-44-4112 TCGA-44-5643 TCGA-44-5645 TCGA-44-6144 
        6.44         6.21         4.60         3.48         6.84         0.30 
TCGA-44-6145 TCGA-44-6146 TCGA-44-6147 TCGA-44-6148 TCGA-44-6774 TCGA-44-6775 
        3.35         9.93         7.76         3.12         5.42         2.70 
TCGA-44-6776 TCGA-44-6777 TCGA-44-6778 TCGA-44-6779 TCGA-49-4486 TCGA-49-4487 
       63.72        32.45        36.49        16.41        76.21        28.11 
TCGA-49-4488 TCGA-49-4490 TCGA-49-4494 TCGA-49-4501 TCGA-49-4505 TCGA-49-4506 
       28.57        12.66        35.54        46.72        14.07        32.84 
TCGA-49-4507 TCGA-49-4510 TCGA-49-4512 TCGA-49-4514 TCGA-49-6742 TCGA-49-6743 
        8.81        29.46        29.75        43.20        15.02        12.13 
TCGA-49-6744 TCGA-49-6745 TCGA-50-5044 TCGA-50-5045 TCGA-50-5049 TCGA-50-5051 
       12.99         4.93        20.48        71.47        48.82        14.96 
TCGA-50-5055 TCGA-50-5066 TCGA-50-5068 TCGA-50-5072 TCGA-50-5930 TCGA-50-5931 
       25.81         9.76        49.28         8.05         9.27         8.78 
TCGA-50-5932 TCGA-50-5933 TCGA-50-5935 TCGA-50-5936 TCGA-50-5939 TCGA-50-5941 
       35.87        77.88        21.47         8.45        15.12         9.37 
TCGA-50-5942 TCGA-50-5944 TCGA-50-5946 TCGA-50-6590 TCGA-50-6591 TCGA-50-6592 
        4.44        12.26        11.47        42.31         3.88        25.51 
TCGA-50-6593 TCGA-50-6594 TCGA-50-6595 TCGA-50-6597 TCGA-55-1592 TCGA-55-1594 
       11.05        12.16         6.21        33.37        23.05        38.73 
TCGA-55-1595 TCGA-55-1596 TCGA-55-6543 TCGA-55-6642 TCGA-55-6712 TCGA-64-1676 
       48.62        45.17         0.07        32.61         0.79        56.81 
TCGA-64-1677 TCGA-64-1680 TCGA-64-5774 TCGA-64-5775 TCGA-64-5778 TCGA-64-5781 
       20.65        37.02        83.84         0.10        30.44        39.52 
TCGA-64-5815 TCGA-67-3770 TCGA-67-3772 TCGA-67-3773 TCGA-67-3774 TCGA-67-6215 
        7.33         0.99         0.59         2.04         0.59         0.89 
TCGA-67-6216 TCGA-67-6217 TCGA-71-6725 TCGA-73-4658 TCGA-73-4659 TCGA-73-4662 
        0.69        13.87         2.01        52.57        23.38        29.95 
TCGA-73-4666 TCGA-73-4668 TCGA-73-4670 TCGA-73-4675 TCGA-73-4676 TCGA-73-4677 
       20.28        15.35         0.46         1.32         4.01         1.25 
TCGA-91-6828 TCGA-91-6829 TCGA-91-6831 TCGA-91-6835 TCGA-91-6836 
        1.22        41.33         1.28         1.15         0.36 

  OLAH MUTATED OLAH WILD-TYPE 
          1.97           0.07 
  OLAH MUTATED OLAH WILD-TYPE 
         39.09          85.32 
  OLAH MUTATED OLAH WILD-TYPE 
        13.315         13.870 
[1] "2.0 - 39.1 (13.3)" "0.1 - 85.3 (13.9)"
    TCGA-05-4249     TCGA-05-4250     TCGA-05-4382     TCGA-05-4384 
"OLAH WILD-TYPE" "OLAH WILD-TYPE" "OLAH WILD-TYPE" "OLAH WILD-TYPE" 
    TCGA-05-4390     TCGA-05-4396     TCGA-05-4397     TCGA-05-4398 
  "OLAH MUTATED"   "OLAH MUTATED" "OLAH WILD-TYPE" "OLAH WILD-TYPE" 
    TCGA-05-4402     TCGA-05-4405     TCGA-05-4415     TCGA-05-4417 
"OLAH WILD-TYPE" "OLAH WILD-TYPE" "OLAH WILD-TYPE" "OLAH WILD-TYPE" 
    TCGA-05-4418     TCGA-05-4420     TCGA-05-4424     TCGA-05-4426 
"OLAH WILD-TYPE" "OLAH WILD-TYPE" "OLAH WILD-TYPE" "OLAH WILD-TYPE" 
    TCGA-05-4427     TCGA-05-4430     TCGA-05-4432     TCGA-05-4433 
"OLAH WILD-TYPE" "OLAH WILD-TYPE" "OLAH WILD-TYPE" "OLAH WILD-TYPE" 
    TCGA-05-4434     TCGA-05-5420     TCGA-05-5423     TCGA-05-5425 
"OLAH WILD-TYPE" "OLAH WILD-TYPE" "OLAH WILD-TYPE" "OLAH WILD-TYPE" 
    TCGA-05-5429     TCGA-05-5715     TCGA-35-3615     TCGA-35-4122 
"OLAH WILD-TYPE" "OLAH WILD-TYPE" "OLAH WILD-TYPE" "OLAH WILD-TYPE" 
    TCGA-35-4123     TCGA-35-5375     TCGA-38-4625     TCGA-38-4626 
"OLAH WILD-TYPE" "OLAH WILD-TYPE" "OLAH WILD-TYPE" "OLAH WILD-TYPE" 
    TCGA-38-4627     TCGA-38-4628     TCGA-38-4629     TCGA-38-4630 
"OLAH WILD-TYPE" "OLAH WILD-TYPE" "OLAH WILD-TYPE" "OLAH WILD-TYPE" 
    TCGA-38-4631     TCGA-38-4632     TCGA-38-6178     TCGA-44-2655 
"OLAH WILD-TYPE" "OLAH WILD-TYPE" "OLAH WILD-TYPE" "OLAH WILD-TYPE" 
    TCGA-44-2656     TCGA-44-2657     TCGA-44-2659     TCGA-44-2661 
"OLAH WILD-TYPE" "OLAH WILD-TYPE" "OLAH WILD-TYPE" "OLAH WILD-TYPE" 
    TCGA-44-2662     TCGA-44-2665     TCGA-44-2666     TCGA-44-2668 
"OLAH WILD-TYPE" "OLAH WILD-TYPE" "OLAH WILD-TYPE" "OLAH WILD-TYPE" 
    TCGA-44-3396     TCGA-44-3398     TCGA-44-3918     TCGA-44-3919 
"OLAH WILD-TYPE" "OLAH WILD-TYPE" "OLAH WILD-TYPE" "OLAH WILD-TYPE" 
    TCGA-44-4112     TCGA-44-5643     TCGA-44-5645     TCGA-44-6144 
"OLAH WILD-TYPE" "OLAH WILD-TYPE" "OLAH WILD-TYPE" "OLAH WILD-TYPE" 
    TCGA-44-6145     TCGA-44-6146     TCGA-44-6147     TCGA-44-6148 
"OLAH WILD-TYPE" "OLAH WILD-TYPE" "OLAH WILD-TYPE" "OLAH WILD-TYPE" 
    TCGA-44-6774     TCGA-44-6775     TCGA-44-6776     TCGA-44-6777 
"OLAH WILD-TYPE" "OLAH WILD-TYPE" "OLAH WILD-TYPE" "OLAH WILD-TYPE" 
    TCGA-44-6778     TCGA-44-6779     TCGA-49-4486     TCGA-49-4487 
"OLAH WILD-TYPE" "OLAH WILD-TYPE" "OLAH WILD-TYPE" "OLAH WILD-TYPE" 
    TCGA-49-4488     TCGA-49-4490     TCGA-49-4494     TCGA-49-4501 
"OLAH WILD-TYPE" "OLAH WILD-TYPE" "OLAH WILD-TYPE" "OLAH WILD-TYPE" 
    TCGA-49-4505     TCGA-49-4506     TCGA-49-4507     TCGA-49-4510 
"OLAH WILD-TYPE" "OLAH WILD-TYPE" "OLAH WILD-TYPE" "OLAH WILD-TYPE" 
    TCGA-49-4512     TCGA-49-4514     TCGA-49-6742     TCGA-49-6743 
"OLAH WILD-TYPE" "OLAH WILD-TYPE" "OLAH WILD-TYPE" "OLAH WILD-TYPE" 
    TCGA-49-6744     TCGA-49-6745     TCGA-50-5044     TCGA-50-5045 
"OLAH WILD-TYPE" "OLAH WILD-TYPE" "OLAH WILD-TYPE" "OLAH WILD-TYPE" 
    TCGA-50-5049     TCGA-50-5051     TCGA-50-5055     TCGA-50-5066 
"OLAH WILD-TYPE" "OLAH WILD-TYPE" "OLAH WILD-TYPE" "OLAH WILD-TYPE" 
    TCGA-50-5068     TCGA-50-5072     TCGA-50-5930     TCGA-50-5931 
"OLAH WILD-TYPE" "OLAH WILD-TYPE" "OLAH WILD-TYPE" "OLAH WILD-TYPE" 
    TCGA-50-5932     TCGA-50-5933     TCGA-50-5935     TCGA-50-5936 
"OLAH WILD-TYPE" "OLAH WILD-TYPE" "OLAH WILD-TYPE" "OLAH WILD-TYPE" 
    TCGA-50-5939     TCGA-50-5941     TCGA-50-5942     TCGA-50-5944 
"OLAH WILD-TYPE" "OLAH WILD-TYPE" "OLAH WILD-TYPE" "OLAH WILD-TYPE" 
    TCGA-50-5946     TCGA-50-6590     TCGA-50-6591     TCGA-50-6592 
"OLAH WILD-TYPE" "OLAH WILD-TYPE" "OLAH WILD-TYPE" "OLAH WILD-TYPE" 
    TCGA-50-6593     TCGA-50-6594     TCGA-50-6595     TCGA-50-6597 
"OLAH WILD-TYPE" "OLAH WILD-TYPE" "OLAH WILD-TYPE" "OLAH WILD-TYPE" 
    TCGA-55-1592     TCGA-55-1594     TCGA-55-1595     TCGA-55-1596 
"OLAH WILD-TYPE" "OLAH WILD-TYPE" "OLAH WILD-TYPE" "OLAH WILD-TYPE" 
    TCGA-55-5899     TCGA-55-6543     TCGA-55-6642     TCGA-55-6712 
  "OLAH MUTATED" "OLAH WILD-TYPE" "OLAH WILD-TYPE" "OLAH WILD-TYPE" 
    TCGA-64-1676     TCGA-64-1677     TCGA-64-1678     TCGA-64-1680 
"OLAH WILD-TYPE" "OLAH WILD-TYPE"   "OLAH MUTATED" "OLAH WILD-TYPE" 
    TCGA-64-5774     TCGA-64-5775     TCGA-64-5778     TCGA-64-5779 
"OLAH WILD-TYPE" "OLAH WILD-TYPE" "OLAH WILD-TYPE"   "OLAH MUTATED" 
    TCGA-64-5781     TCGA-64-5815     TCGA-67-3770     TCGA-67-3771 
"OLAH WILD-TYPE" "OLAH WILD-TYPE" "OLAH WILD-TYPE"   "OLAH MUTATED" 
    TCGA-67-3772     TCGA-67-3773     TCGA-67-3774     TCGA-67-6215 
"OLAH WILD-TYPE" "OLAH WILD-TYPE" "OLAH WILD-TYPE" "OLAH WILD-TYPE" 
    TCGA-67-6216     TCGA-67-6217     TCGA-71-6725     TCGA-73-4658 
"OLAH WILD-TYPE" "OLAH WILD-TYPE" "OLAH WILD-TYPE" "OLAH WILD-TYPE" 
    TCGA-73-4659     TCGA-73-4662     TCGA-73-4666     TCGA-73-4668 
"OLAH WILD-TYPE" "OLAH WILD-TYPE" "OLAH WILD-TYPE" "OLAH WILD-TYPE" 
    TCGA-73-4670     TCGA-73-4675     TCGA-73-4676     TCGA-73-4677 
"OLAH WILD-TYPE" "OLAH WILD-TYPE" "OLAH WILD-TYPE" "OLAH WILD-TYPE" 
    TCGA-91-6828     TCGA-91-6829     TCGA-91-6831     TCGA-91-6835 
"OLAH WILD-TYPE" "OLAH WILD-TYPE" "OLAH WILD-TYPE" "OLAH WILD-TYPE" 
    TCGA-91-6836 
"OLAH WILD-TYPE" 
    TCGA-05-4249     TCGA-05-4250     TCGA-05-4382     TCGA-05-4384 
"OLAH WILD-TYPE" "OLAH WILD-TYPE" "OLAH WILD-TYPE" "OLAH WILD-TYPE" 
    TCGA-05-4390     TCGA-05-4396     TCGA-05-4397     TCGA-05-4398 
  "OLAH MUTATED"   "OLAH MUTATED" "OLAH WILD-TYPE" "OLAH WILD-TYPE" 
    TCGA-05-4402     TCGA-05-4405     TCGA-05-4415     TCGA-05-4417 
"OLAH WILD-TYPE" "OLAH WILD-TYPE" "OLAH WILD-TYPE" "OLAH WILD-TYPE" 
    TCGA-05-4418     TCGA-05-4420     TCGA-05-4424     TCGA-05-4426 
"OLAH WILD-TYPE" "OLAH WILD-TYPE" "OLAH WILD-TYPE" "OLAH WILD-TYPE" 
    TCGA-05-4427     TCGA-05-4430     TCGA-05-4432     TCGA-05-4433 
"OLAH WILD-TYPE" "OLAH WILD-TYPE" "OLAH WILD-TYPE" "OLAH WILD-TYPE" 
    TCGA-05-4434     TCGA-05-5420     TCGA-05-5423     TCGA-05-5425 
"OLAH WILD-TYPE" "OLAH WILD-TYPE" "OLAH WILD-TYPE" "OLAH WILD-TYPE" 
    TCGA-05-5429     TCGA-05-5715     TCGA-35-3615     TCGA-35-4122 
"OLAH WILD-TYPE" "OLAH WILD-TYPE" "OLAH WILD-TYPE" "OLAH WILD-TYPE" 
    TCGA-35-4123     TCGA-35-5375     TCGA-38-4625     TCGA-38-4626 
"OLAH WILD-TYPE" "OLAH WILD-TYPE" "OLAH WILD-TYPE" "OLAH WILD-TYPE" 
    TCGA-38-4627     TCGA-38-4628     TCGA-38-4629     TCGA-38-4630 
"OLAH WILD-TYPE" "OLAH WILD-TYPE" "OLAH WILD-TYPE" "OLAH WILD-TYPE" 
    TCGA-38-4631     TCGA-38-4632     TCGA-38-6178     TCGA-44-2655 
"OLAH WILD-TYPE" "OLAH WILD-TYPE" "OLAH WILD-TYPE" "OLAH WILD-TYPE" 
    TCGA-44-2656     TCGA-44-2657     TCGA-44-2659     TCGA-44-2661 
"OLAH WILD-TYPE" "OLAH WILD-TYPE" "OLAH WILD-TYPE" "OLAH WILD-TYPE" 
    TCGA-44-2662     TCGA-44-2665     TCGA-44-2666     TCGA-44-2668 
"OLAH WILD-TYPE" "OLAH WILD-TYPE" "OLAH WILD-TYPE" "OLAH WILD-TYPE" 
    TCGA-44-3396     TCGA-44-3398     TCGA-44-3918     TCGA-44-3919 
"OLAH WILD-TYPE" "OLAH WILD-TYPE" "OLAH WILD-TYPE" "OLAH WILD-TYPE" 
    TCGA-44-4112     TCGA-44-5643     TCGA-44-5645     TCGA-44-6144 
"OLAH WILD-TYPE" "OLAH WILD-TYPE" "OLAH WILD-TYPE" "OLAH WILD-TYPE" 
    TCGA-44-6145     TCGA-44-6146     TCGA-44-6147     TCGA-44-6148 
"OLAH WILD-TYPE" "OLAH WILD-TYPE" "OLAH WILD-TYPE" "OLAH WILD-TYPE" 
    TCGA-44-6774     TCGA-44-6775     TCGA-44-6776     TCGA-44-6777 
"OLAH WILD-TYPE" "OLAH WILD-TYPE" "OLAH WILD-TYPE" "OLAH WILD-TYPE" 
    TCGA-44-6778     TCGA-44-6779     TCGA-49-4486     TCGA-49-4487 
"OLAH WILD-TYPE" "OLAH WILD-TYPE" "OLAH WILD-TYPE" "OLAH WILD-TYPE" 
    TCGA-49-4488     TCGA-49-4490     TCGA-49-4494     TCGA-49-4501 
"OLAH WILD-TYPE" "OLAH WILD-TYPE" "OLAH WILD-TYPE" "OLAH WILD-TYPE" 
    TCGA-49-4505     TCGA-49-4506     TCGA-49-4507     TCGA-49-4510 
"OLAH WILD-TYPE" "OLAH WILD-TYPE" "OLAH WILD-TYPE" "OLAH WILD-TYPE" 
    TCGA-49-4512     TCGA-49-4514     TCGA-49-6742     TCGA-49-6743 
"OLAH WILD-TYPE" "OLAH WILD-TYPE" "OLAH WILD-TYPE" "OLAH WILD-TYPE" 
    TCGA-49-6744     TCGA-49-6745     TCGA-50-5044     TCGA-50-5045 
"OLAH WILD-TYPE" "OLAH WILD-TYPE" "OLAH WILD-TYPE" "OLAH WILD-TYPE" 
    TCGA-50-5049     TCGA-50-5051     TCGA-50-5055     TCGA-50-5066 
"OLAH WILD-TYPE" "OLAH WILD-TYPE" "OLAH WILD-TYPE" "OLAH WILD-TYPE" 
    TCGA-50-5068     TCGA-50-5072     TCGA-50-5930     TCGA-50-5931 
"OLAH WILD-TYPE" "OLAH WILD-TYPE" "OLAH WILD-TYPE" "OLAH WILD-TYPE" 
    TCGA-50-5932     TCGA-50-5933     TCGA-50-5935     TCGA-50-5936 
"OLAH WILD-TYPE" "OLAH WILD-TYPE" "OLAH WILD-TYPE" "OLAH WILD-TYPE" 
    TCGA-50-5939     TCGA-50-5941     TCGA-50-5942     TCGA-50-5944 
"OLAH WILD-TYPE" "OLAH WILD-TYPE" "OLAH WILD-TYPE" "OLAH WILD-TYPE" 
    TCGA-50-5946     TCGA-50-6590     TCGA-50-6591     TCGA-50-6592 
"OLAH WILD-TYPE" "OLAH WILD-TYPE" "OLAH WILD-TYPE" "OLAH WILD-TYPE" 
    TCGA-50-6593     TCGA-50-6594     TCGA-50-6595     TCGA-50-6597 
"OLAH WILD-TYPE" "OLAH WILD-TYPE" "OLAH WILD-TYPE" "OLAH WILD-TYPE" 
    TCGA-55-1592     TCGA-55-1594     TCGA-55-1595     TCGA-55-1596 
"OLAH WILD-TYPE" "OLAH WILD-TYPE" "OLAH WILD-TYPE" "OLAH WILD-TYPE" 
    TCGA-55-5899     TCGA-55-6543     TCGA-55-6642     TCGA-55-6712 
  "OLAH MUTATED" "OLAH WILD-TYPE" "OLAH WILD-TYPE" "OLAH WILD-TYPE" 
    TCGA-64-1676     TCGA-64-1677     TCGA-64-1678     TCGA-64-1680 
"OLAH WILD-TYPE" "OLAH WILD-TYPE"   "OLAH MUTATED" "OLAH WILD-TYPE" 
    TCGA-64-5774     TCGA-64-5775     TCGA-64-5778     TCGA-64-5779 
"OLAH WILD-TYPE" "OLAH WILD-TYPE" "OLAH WILD-TYPE"   "OLAH MUTATED" 
    TCGA-64-5781     TCGA-64-5815     TCGA-67-3770     TCGA-67-3771 
"OLAH WILD-TYPE" "OLAH WILD-TYPE" "OLAH WILD-TYPE"   "OLAH MUTATED" 
    TCGA-67-3772     TCGA-67-3773     TCGA-67-3774     TCGA-67-6215 
"OLAH WILD-TYPE" "OLAH WILD-TYPE" "OLAH WILD-TYPE" "OLAH WILD-TYPE" 
    TCGA-67-6216     TCGA-67-6217     TCGA-71-6725     TCGA-73-4658 
"OLAH WILD-TYPE" "OLAH WILD-TYPE" "OLAH WILD-TYPE" "OLAH WILD-TYPE" 
    TCGA-73-4659     TCGA-73-4662     TCGA-73-4666     TCGA-73-4668 
"OLAH WILD-TYPE" "OLAH WILD-TYPE" "OLAH WILD-TYPE" "OLAH WILD-TYPE" 
    TCGA-73-4670     TCGA-73-4675     TCGA-73-4676     TCGA-73-4677 
"OLAH WILD-TYPE" "OLAH WILD-TYPE" "OLAH WILD-TYPE" "OLAH WILD-TYPE" 
    TCGA-91-6828     TCGA-91-6829     TCGA-91-6831     TCGA-91-6835 
"OLAH WILD-TYPE" "OLAH WILD-TYPE" "OLAH WILD-TYPE" "OLAH WILD-TYPE" 
    TCGA-91-6836 
"OLAH WILD-TYPE" 
    TCGA-05-4249     TCGA-05-4250     TCGA-05-4382     TCGA-05-4384 
"OLAH WILD-TYPE" "OLAH WILD-TYPE" "OLAH WILD-TYPE" "OLAH WILD-TYPE" 
    TCGA-05-4390     TCGA-05-4396     TCGA-05-4397     TCGA-05-4398 
  "OLAH MUTATED"   "OLAH MUTATED" "OLAH WILD-TYPE" "OLAH WILD-TYPE" 
    TCGA-05-4402     TCGA-05-4405     TCGA-05-4415     TCGA-05-4417 
"OLAH WILD-TYPE" "OLAH WILD-TYPE" "OLAH WILD-TYPE" "OLAH WILD-TYPE" 
    TCGA-05-4418     TCGA-05-4420     TCGA-05-4424     TCGA-05-4426 
"OLAH WILD-TYPE" "OLAH WILD-TYPE" "OLAH WILD-TYPE" "OLAH WILD-TYPE" 
    TCGA-05-4427     TCGA-05-4430     TCGA-05-4432     TCGA-05-4433 
"OLAH WILD-TYPE" "OLAH WILD-TYPE" "OLAH WILD-TYPE" "OLAH WILD-TYPE" 
    TCGA-05-4434     TCGA-05-5420     TCGA-05-5423     TCGA-05-5425 
"OLAH WILD-TYPE" "OLAH WILD-TYPE" "OLAH WILD-TYPE" "OLAH WILD-TYPE" 
    TCGA-05-5429     TCGA-05-5715     TCGA-35-3615     TCGA-35-4122 
"OLAH WILD-TYPE" "OLAH WILD-TYPE" "OLAH WILD-TYPE" "OLAH WILD-TYPE" 
    TCGA-35-4123     TCGA-35-5375     TCGA-38-4625     TCGA-38-4626 
"OLAH WILD-TYPE" "OLAH WILD-TYPE" "OLAH WILD-TYPE" "OLAH WILD-TYPE" 
    TCGA-38-4627     TCGA-38-4628     TCGA-38-4629     TCGA-38-4630 
"OLAH WILD-TYPE" "OLAH WILD-TYPE" "OLAH WILD-TYPE" "OLAH WILD-TYPE" 
    TCGA-38-4631     TCGA-38-4632     TCGA-38-6178     TCGA-44-2655 
"OLAH WILD-TYPE" "OLAH WILD-TYPE" "OLAH WILD-TYPE" "OLAH WILD-TYPE" 
    TCGA-44-2656     TCGA-44-2657     TCGA-44-2659     TCGA-44-2661 
"OLAH WILD-TYPE" "OLAH WILD-TYPE" "OLAH WILD-TYPE" "OLAH WILD-TYPE" 
    TCGA-44-2662     TCGA-44-2665     TCGA-44-2666     TCGA-44-2668 
"OLAH WILD-TYPE" "OLAH WILD-TYPE" "OLAH WILD-TYPE" "OLAH WILD-TYPE" 
    TCGA-44-3396     TCGA-44-3398     TCGA-44-3918     TCGA-44-3919 
"OLAH WILD-TYPE" "OLAH WILD-TYPE" "OLAH WILD-TYPE" "OLAH WILD-TYPE" 
    TCGA-44-4112     TCGA-44-5643     TCGA-44-5645     TCGA-44-6144 
"OLAH WILD-TYPE" "OLAH WILD-TYPE" "OLAH WILD-TYPE" "OLAH WILD-TYPE" 
    TCGA-44-6145     TCGA-44-6146     TCGA-44-6147     TCGA-44-6148 
"OLAH WILD-TYPE" "OLAH WILD-TYPE" "OLAH WILD-TYPE" "OLAH WILD-TYPE" 
    TCGA-44-6774     TCGA-44-6775     TCGA-44-6776     TCGA-44-6777 
"OLAH WILD-TYPE" "OLAH WILD-TYPE" "OLAH WILD-TYPE" "OLAH WILD-TYPE" 
    TCGA-44-6778     TCGA-44-6779     TCGA-49-4486     TCGA-49-4487 
"OLAH WILD-TYPE" "OLAH WILD-TYPE" "OLAH WILD-TYPE" "OLAH WILD-TYPE" 
    TCGA-49-4488     TCGA-49-4490     TCGA-49-4494     TCGA-49-4501 
"OLAH WILD-TYPE" "OLAH WILD-TYPE" "OLAH WILD-TYPE" "OLAH WILD-TYPE" 
    TCGA-49-4505     TCGA-49-4506     TCGA-49-4507     TCGA-49-4510 
"OLAH WILD-TYPE" "OLAH WILD-TYPE" "OLAH WILD-TYPE" "OLAH WILD-TYPE" 
    TCGA-49-4512     TCGA-49-4514     TCGA-49-6742     TCGA-49-6743 
"OLAH WILD-TYPE" "OLAH WILD-TYPE" "OLAH WILD-TYPE" "OLAH WILD-TYPE" 
    TCGA-49-6744     TCGA-49-6745     TCGA-50-5044     TCGA-50-5045 
"OLAH WILD-TYPE" "OLAH WILD-TYPE" "OLAH WILD-TYPE" "OLAH WILD-TYPE" 
    TCGA-50-5049     TCGA-50-5051     TCGA-50-5055     TCGA-50-5066 
"OLAH WILD-TYPE" "OLAH WILD-TYPE" "OLAH WILD-TYPE" "OLAH WILD-TYPE" 
    TCGA-50-5068     TCGA-50-5072     TCGA-50-5930     TCGA-50-5931 
"OLAH WILD-TYPE" "OLAH WILD-TYPE" "OLAH WILD-TYPE" "OLAH WILD-TYPE" 
    TCGA-50-5932     TCGA-50-5933     TCGA-50-5935     TCGA-50-5936 
"OLAH WILD-TYPE" "OLAH WILD-TYPE" "OLAH WILD-TYPE" "OLAH WILD-TYPE" 
    TCGA-50-5939     TCGA-50-5941     TCGA-50-5942     TCGA-50-5944 
"OLAH WILD-TYPE" "OLAH WILD-TYPE" "OLAH WILD-TYPE" "OLAH WILD-TYPE" 
    TCGA-50-5946     TCGA-50-6590     TCGA-50-6591     TCGA-50-6592 
"OLAH WILD-TYPE" "OLAH WILD-TYPE" "OLAH WILD-TYPE" "OLAH WILD-TYPE" 
    TCGA-50-6593     TCGA-50-6594     TCGA-50-6595     TCGA-50-6597 
"OLAH WILD-TYPE" "OLAH WILD-TYPE" "OLAH WILD-TYPE" "OLAH WILD-TYPE" 
    TCGA-55-1592     TCGA-55-1594     TCGA-55-1595     TCGA-55-1596 
"OLAH WILD-TYPE" "OLAH WILD-TYPE" "OLAH WILD-TYPE" "OLAH WILD-TYPE" 
    TCGA-55-5899     TCGA-55-6543     TCGA-55-6642     TCGA-55-6712 
  "OLAH MUTATED" "OLAH WILD-TYPE" "OLAH WILD-TYPE" "OLAH WILD-TYPE" 
    TCGA-64-1676     TCGA-64-1677     TCGA-64-1678     TCGA-64-1680 
"OLAH WILD-TYPE" "OLAH WILD-TYPE"   "OLAH MUTATED" "OLAH WILD-TYPE" 
    TCGA-64-5774     TCGA-64-5775     TCGA-64-5778     TCGA-64-5779 
"OLAH WILD-TYPE" "OLAH WILD-TYPE" "OLAH WILD-TYPE"   "OLAH MUTATED" 
    TCGA-64-5781     TCGA-64-5815     TCGA-67-3770     TCGA-67-3771 
"OLAH WILD-TYPE" "OLAH WILD-TYPE" "OLAH WILD-TYPE"   "OLAH MUTATED" 
    TCGA-67-3772     TCGA-67-3773     TCGA-67-3774     TCGA-67-6215 
"OLAH WILD-TYPE" "OLAH WILD-TYPE" "OLAH WILD-TYPE" "OLAH WILD-TYPE" 
    TCGA-67-6216     TCGA-67-6217     TCGA-71-6725     TCGA-73-4658 
"OLAH WILD-TYPE" "OLAH WILD-TYPE" "OLAH WILD-TYPE" "OLAH WILD-TYPE" 
    TCGA-73-4659     TCGA-73-4662     TCGA-73-4666     TCGA-73-4668 
"OLAH WILD-TYPE" "OLAH WILD-TYPE" "OLAH WILD-TYPE" "OLAH WILD-TYPE" 
    TCGA-73-4670     TCGA-73-4675     TCGA-73-4676     TCGA-73-4677 
"OLAH WILD-TYPE" "OLAH WILD-TYPE" "OLAH WILD-TYPE" "OLAH WILD-TYPE" 
    TCGA-91-6828     TCGA-91-6829     TCGA-91-6831     TCGA-91-6835 
"OLAH WILD-TYPE" "OLAH WILD-TYPE" "OLAH WILD-TYPE" "OLAH WILD-TYPE" 
    TCGA-91-6836 
"OLAH WILD-TYPE" 
[1] "hr=" "1.8"
D237V2, continuous
D237V3, binary
[1] "tbl2"
                cls
clus             [,1] [,2]
  OLAH MUTATED      3    4
  OLAH WILD-TYPE   90   75
        clus
vv       OLAH MUTATED OLAH WILD-TYPE
  FEMALE            3             90
  MALE              4             75
D237V4, continuous
D237V5, multiclass
D237V6, multiclass
    clus
vv   OLAH MUTATED OLAH WILD-TYPE
  T1            2             39
  T2            3            105
  T3            0             14
  T4            2              6
D237V7, multiclass
       clus
vv      OLAH MUTATED OLAH WILD-TYPE
  N0               3             92
  N1               2             35
  N2+N3            2             33
D237V8, multiclass
    clus
vv   OLAH MUTATED OLAH WILD-TYPE
  M0            7            130
  M1            0              9
  MX            0             22
D237V9, multiclass
     clus
vv    OLAH MUTATED OLAH WILD-TYPE
  I              3             85
  II             1             32
  III            3             36
  IV             0              9
D237V10, binary
[1] "tbl2"
                cls
clus             [,1] [,2]
  OLAH MUTATED      0    7
  OLAH WILD-TYPE   16  149
     clus
vv    OLAH MUTATED OLAH WILD-TYPE
  NO             0             16
  YES            7            149
D237V11, continuous
D237V12, continuous
D237V13, multiclass
                                             clus
vv                                            OLAH MUTATED OLAH WILD-TYPE
  CURRENT REFORMED SMOKER FOR < OR = 15 YEARS            3             59
  CURRENT REFORMED SMOKER FOR > 15 YEARS                 2             44
  CURRENT SMOKER                                         1             27
  LIFELONG NON-SMOKER                                    1             23
D237V14, continuous

Clustering(238) Variable = OR4A16 MUTATION ANALYSIS
D238V1, survival
                  sevent
clus2               0  1
  OR4A16 MUTATED    6  2
  OR4A16 WILD-TYPE 93 48
  OR4A16 MUTATED OR4A16 WILD-TYPE 
               8              141 
  OR4A16 MUTATED OR4A16 WILD-TYPE 
               2               48 
$`OR4A16 MUTATED`
TCGA-05-4382 TCGA-05-4424 TCGA-05-4432 TCGA-05-5420 TCGA-35-4123 TCGA-50-6593 
       19.92        30.02        25.02         1.02         5.95        11.05 
TCGA-50-6594 TCGA-64-5781 
       12.16        39.52 

$`OR4A16 WILD-TYPE`
TCGA-05-4249 TCGA-05-4250 TCGA-05-4384 TCGA-05-4390 TCGA-05-4396 TCGA-05-4397 
       38.07         3.98        14.01        37.02         9.96        24.03 
TCGA-05-4398 TCGA-05-4402 TCGA-05-4405 TCGA-05-4415 TCGA-05-4417 TCGA-05-4418 
       47.05         8.02        20.05         2.96        14.93         8.98 
TCGA-05-4420 TCGA-05-4426 TCGA-05-4427 TCGA-05-4430 TCGA-05-4433 TCGA-05-4434 
       29.95        26.01        26.01        25.02        24.00        15.02 
TCGA-05-5423 TCGA-05-5425 TCGA-05-5429 TCGA-05-5715 TCGA-35-3615 TCGA-35-4122 
        4.96         2.96         0.99         2.04         0.46         7.36 
TCGA-35-5375 TCGA-38-4625 TCGA-38-4626 TCGA-38-4627 TCGA-38-4628 TCGA-38-4629 
        8.68        47.61        85.32        37.71        49.02        28.37 
TCGA-38-4630 TCGA-38-4631 TCGA-38-4632 TCGA-38-6178 TCGA-44-2655 TCGA-44-2656 
       35.28        11.64        44.61         5.19        18.87        19.10 
TCGA-44-2657 TCGA-44-2659 TCGA-44-2661 TCGA-44-2662 TCGA-44-2665 TCGA-44-2666 
       13.15        17.39         3.39        15.78        13.15         3.19 
TCGA-44-2668 TCGA-44-3396 TCGA-44-3398 TCGA-44-3918 TCGA-44-3919 TCGA-44-4112 
        8.09        10.22         8.32         6.44         6.21         4.60 
TCGA-44-5643 TCGA-44-5645 TCGA-44-6144 TCGA-44-6145 TCGA-44-6146 TCGA-44-6147 
        3.48         6.84         0.30         3.35         9.93         7.76 
TCGA-44-6148 TCGA-44-6774 TCGA-44-6775 TCGA-44-6776 TCGA-44-6777 TCGA-44-6778 
        3.12         5.42         2.70        63.72        32.45        36.49 
TCGA-44-6779 TCGA-49-4486 TCGA-49-4487 TCGA-49-4488 TCGA-49-4490 TCGA-49-4494 
       16.41        76.21        28.11        28.57        12.66        35.54 
TCGA-49-4501 TCGA-49-4505 TCGA-49-4506 TCGA-49-4507 TCGA-49-4510 TCGA-49-4512 
       46.72        14.07        32.84         8.81        29.46        29.75 
TCGA-49-4514 TCGA-49-6742 TCGA-49-6743 TCGA-49-6744 TCGA-49-6745 TCGA-50-5044 
       43.20        15.02        12.13        12.99         4.93        20.48 
TCGA-50-5045 TCGA-50-5049 TCGA-50-5051 TCGA-50-5055 TCGA-50-5066 TCGA-50-5068 
       71.47        48.82        14.96        25.81         9.76        49.28 
TCGA-50-5072 TCGA-50-5930 TCGA-50-5931 TCGA-50-5932 TCGA-50-5933 TCGA-50-5935 
        8.05         9.27         8.78        35.87        77.88        21.47 
TCGA-50-5936 TCGA-50-5939 TCGA-50-5941 TCGA-50-5942 TCGA-50-5944 TCGA-50-5946 
        8.45        15.12         9.37         4.44        12.26        11.47 
TCGA-50-6590 TCGA-50-6591 TCGA-50-6592 TCGA-50-6595 TCGA-50-6597 TCGA-55-1592 
       42.31         3.88        25.51         6.21        33.37        23.05 
TCGA-55-1594 TCGA-55-1595 TCGA-55-1596 TCGA-55-5899 TCGA-55-6543 TCGA-55-6642 
       38.73        48.62        45.17         2.86         0.07        32.61 
TCGA-55-6712 TCGA-64-1676 TCGA-64-1677 TCGA-64-1678 TCGA-64-1680 TCGA-64-5774 
        0.79        56.81        20.65        39.09        37.02        83.84 
TCGA-64-5775 TCGA-64-5778 TCGA-64-5779 TCGA-64-5815 TCGA-67-3770 TCGA-67-3771 
        0.10        30.44        16.67         7.33         0.99         1.97 
TCGA-67-3772 TCGA-67-3773 TCGA-67-3774 TCGA-67-6215 TCGA-67-6216 TCGA-67-6217 
        0.59         2.04         0.59         0.89         0.69        13.87 
TCGA-71-6725 TCGA-73-4658 TCGA-73-4659 TCGA-73-4662 TCGA-73-4666 TCGA-73-4668 
        2.01        52.57        23.38        29.95        20.28        15.35 
TCGA-73-4670 TCGA-73-4675 TCGA-73-4676 TCGA-73-4677 TCGA-91-6828 TCGA-91-6829 
        0.46         1.32         4.01         1.25         1.22        41.33 
TCGA-91-6831 TCGA-91-6835 TCGA-91-6836 
        1.28         1.15         0.36 

  OR4A16 MUTATED OR4A16 WILD-TYPE 
            1.02             0.07 
  OR4A16 MUTATED OR4A16 WILD-TYPE 
           39.52            85.32 
  OR4A16 MUTATED OR4A16 WILD-TYPE 
           16.04            13.87 
[1] "1.0 - 39.5 (16.0)" "0.1 - 85.3 (13.9)"
      TCGA-05-4249       TCGA-05-4250       TCGA-05-4382       TCGA-05-4384 
"OR4A16 WILD-TYPE" "OR4A16 WILD-TYPE"   "OR4A16 MUTATED" "OR4A16 WILD-TYPE" 
      TCGA-05-4390       TCGA-05-4396       TCGA-05-4397       TCGA-05-4398 
"OR4A16 WILD-TYPE" "OR4A16 WILD-TYPE" "OR4A16 WILD-TYPE" "OR4A16 WILD-TYPE" 
      TCGA-05-4402       TCGA-05-4405       TCGA-05-4415       TCGA-05-4417 
"OR4A16 WILD-TYPE" "OR4A16 WILD-TYPE" "OR4A16 WILD-TYPE" "OR4A16 WILD-TYPE" 
      TCGA-05-4418       TCGA-05-4420       TCGA-05-4424       TCGA-05-4426 
"OR4A16 WILD-TYPE" "OR4A16 WILD-TYPE"   "OR4A16 MUTATED" "OR4A16 WILD-TYPE" 
      TCGA-05-4427       TCGA-05-4430       TCGA-05-4432       TCGA-05-4433 
"OR4A16 WILD-TYPE" "OR4A16 WILD-TYPE"   "OR4A16 MUTATED" "OR4A16 WILD-TYPE" 
      TCGA-05-4434       TCGA-05-5420       TCGA-05-5423       TCGA-05-5425 
"OR4A16 WILD-TYPE"   "OR4A16 MUTATED" "OR4A16 WILD-TYPE" "OR4A16 WILD-TYPE" 
      TCGA-05-5429       TCGA-05-5715       TCGA-35-3615       TCGA-35-4122 
"OR4A16 WILD-TYPE" "OR4A16 WILD-TYPE" "OR4A16 WILD-TYPE" "OR4A16 WILD-TYPE" 
      TCGA-35-4123       TCGA-35-5375       TCGA-38-4625       TCGA-38-4626 
  "OR4A16 MUTATED" "OR4A16 WILD-TYPE" "OR4A16 WILD-TYPE" "OR4A16 WILD-TYPE" 
      TCGA-38-4627       TCGA-38-4628       TCGA-38-4629       TCGA-38-4630 
"OR4A16 WILD-TYPE" "OR4A16 WILD-TYPE" "OR4A16 WILD-TYPE" "OR4A16 WILD-TYPE" 
      TCGA-38-4631       TCGA-38-4632       TCGA-38-6178       TCGA-44-2655 
"OR4A16 WILD-TYPE" "OR4A16 WILD-TYPE" "OR4A16 WILD-TYPE" "OR4A16 WILD-TYPE" 
      TCGA-44-2656       TCGA-44-2657       TCGA-44-2659       TCGA-44-2661 
"OR4A16 WILD-TYPE" "OR4A16 WILD-TYPE" "OR4A16 WILD-TYPE" "OR4A16 WILD-TYPE" 
      TCGA-44-2662       TCGA-44-2665       TCGA-44-2666       TCGA-44-2668 
"OR4A16 WILD-TYPE" "OR4A16 WILD-TYPE" "OR4A16 WILD-TYPE" "OR4A16 WILD-TYPE" 
      TCGA-44-3396       TCGA-44-3398       TCGA-44-3918       TCGA-44-3919 
"OR4A16 WILD-TYPE" "OR4A16 WILD-TYPE" "OR4A16 WILD-TYPE" "OR4A16 WILD-TYPE" 
      TCGA-44-4112       TCGA-44-5643       TCGA-44-5645       TCGA-44-6144 
"OR4A16 WILD-TYPE" "OR4A16 WILD-TYPE" "OR4A16 WILD-TYPE" "OR4A16 WILD-TYPE" 
      TCGA-44-6145       TCGA-44-6146       TCGA-44-6147       TCGA-44-6148 
"OR4A16 WILD-TYPE" "OR4A16 WILD-TYPE" "OR4A16 WILD-TYPE" "OR4A16 WILD-TYPE" 
      TCGA-44-6774       TCGA-44-6775       TCGA-44-6776       TCGA-44-6777 
"OR4A16 WILD-TYPE" "OR4A16 WILD-TYPE" "OR4A16 WILD-TYPE" "OR4A16 WILD-TYPE" 
      TCGA-44-6778       TCGA-44-6779       TCGA-49-4486       TCGA-49-4487 
"OR4A16 WILD-TYPE" "OR4A16 WILD-TYPE" "OR4A16 WILD-TYPE" "OR4A16 WILD-TYPE" 
      TCGA-49-4488       TCGA-49-4490       TCGA-49-4494       TCGA-49-4501 
"OR4A16 WILD-TYPE" "OR4A16 WILD-TYPE" "OR4A16 WILD-TYPE" "OR4A16 WILD-TYPE" 
      TCGA-49-4505       TCGA-49-4506       TCGA-49-4507       TCGA-49-4510 
"OR4A16 WILD-TYPE" "OR4A16 WILD-TYPE" "OR4A16 WILD-TYPE" "OR4A16 WILD-TYPE" 
      TCGA-49-4512       TCGA-49-4514       TCGA-49-6742       TCGA-49-6743 
"OR4A16 WILD-TYPE" "OR4A16 WILD-TYPE" "OR4A16 WILD-TYPE" "OR4A16 WILD-TYPE" 
      TCGA-49-6744       TCGA-49-6745       TCGA-50-5044       TCGA-50-5045 
"OR4A16 WILD-TYPE" "OR4A16 WILD-TYPE" "OR4A16 WILD-TYPE" "OR4A16 WILD-TYPE" 
      TCGA-50-5049       TCGA-50-5051       TCGA-50-5055       TCGA-50-5066 
"OR4A16 WILD-TYPE" "OR4A16 WILD-TYPE" "OR4A16 WILD-TYPE" "OR4A16 WILD-TYPE" 
      TCGA-50-5068       TCGA-50-5072       TCGA-50-5930       TCGA-50-5931 
"OR4A16 WILD-TYPE" "OR4A16 WILD-TYPE" "OR4A16 WILD-TYPE" "OR4A16 WILD-TYPE" 
      TCGA-50-5932       TCGA-50-5933       TCGA-50-5935       TCGA-50-5936 
"OR4A16 WILD-TYPE" "OR4A16 WILD-TYPE" "OR4A16 WILD-TYPE" "OR4A16 WILD-TYPE" 
      TCGA-50-5939       TCGA-50-5941       TCGA-50-5942       TCGA-50-5944 
"OR4A16 WILD-TYPE" "OR4A16 WILD-TYPE" "OR4A16 WILD-TYPE" "OR4A16 WILD-TYPE" 
      TCGA-50-5946       TCGA-50-6590       TCGA-50-6591       TCGA-50-6592 
"OR4A16 WILD-TYPE" "OR4A16 WILD-TYPE" "OR4A16 WILD-TYPE" "OR4A16 WILD-TYPE" 
      TCGA-50-6593       TCGA-50-6594       TCGA-50-6595       TCGA-50-6597 
  "OR4A16 MUTATED"   "OR4A16 MUTATED" "OR4A16 WILD-TYPE" "OR4A16 WILD-TYPE" 
      TCGA-55-1592       TCGA-55-1594       TCGA-55-1595       TCGA-55-1596 
"OR4A16 WILD-TYPE" "OR4A16 WILD-TYPE" "OR4A16 WILD-TYPE" "OR4A16 WILD-TYPE" 
      TCGA-55-5899       TCGA-55-6543       TCGA-55-6642       TCGA-55-6712 
"OR4A16 WILD-TYPE" "OR4A16 WILD-TYPE" "OR4A16 WILD-TYPE" "OR4A16 WILD-TYPE" 
      TCGA-64-1676       TCGA-64-1677       TCGA-64-1678       TCGA-64-1680 
"OR4A16 WILD-TYPE" "OR4A16 WILD-TYPE" "OR4A16 WILD-TYPE" "OR4A16 WILD-TYPE" 
      TCGA-64-5774       TCGA-64-5775       TCGA-64-5778       TCGA-64-5779 
"OR4A16 WILD-TYPE" "OR4A16 WILD-TYPE" "OR4A16 WILD-TYPE" "OR4A16 WILD-TYPE" 
      TCGA-64-5781       TCGA-64-5815       TCGA-67-3770       TCGA-67-3771 
  "OR4A16 MUTATED" "OR4A16 WILD-TYPE" "OR4A16 WILD-TYPE" "OR4A16 WILD-TYPE" 
      TCGA-67-3772       TCGA-67-3773       TCGA-67-3774       TCGA-67-6215 
"OR4A16 WILD-TYPE" "OR4A16 WILD-TYPE" "OR4A16 WILD-TYPE" "OR4A16 WILD-TYPE" 
      TCGA-67-6216       TCGA-67-6217       TCGA-71-6725       TCGA-73-4658 
"OR4A16 WILD-TYPE" "OR4A16 WILD-TYPE" "OR4A16 WILD-TYPE" "OR4A16 WILD-TYPE" 
      TCGA-73-4659       TCGA-73-4662       TCGA-73-4666       TCGA-73-4668 
"OR4A16 WILD-TYPE" "OR4A16 WILD-TYPE" "OR4A16 WILD-TYPE" "OR4A16 WILD-TYPE" 
      TCGA-73-4670       TCGA-73-4675       TCGA-73-4676       TCGA-73-4677 
"OR4A16 WILD-TYPE" "OR4A16 WILD-TYPE" "OR4A16 WILD-TYPE" "OR4A16 WILD-TYPE" 
      TCGA-91-6828       TCGA-91-6829       TCGA-91-6831       TCGA-91-6835 
"OR4A16 WILD-TYPE" "OR4A16 WILD-TYPE" "OR4A16 WILD-TYPE" "OR4A16 WILD-TYPE" 
      TCGA-91-6836 
"OR4A16 WILD-TYPE" 
      TCGA-05-4249       TCGA-05-4250       TCGA-05-4382       TCGA-05-4384 
"OR4A16 WILD-TYPE" "OR4A16 WILD-TYPE"   "OR4A16 MUTATED" "OR4A16 WILD-TYPE" 
      TCGA-05-4390       TCGA-05-4396       TCGA-05-4397       TCGA-05-4398 
"OR4A16 WILD-TYPE" "OR4A16 WILD-TYPE" "OR4A16 WILD-TYPE" "OR4A16 WILD-TYPE" 
      TCGA-05-4402       TCGA-05-4405       TCGA-05-4415       TCGA-05-4417 
"OR4A16 WILD-TYPE" "OR4A16 WILD-TYPE" "OR4A16 WILD-TYPE" "OR4A16 WILD-TYPE" 
      TCGA-05-4418       TCGA-05-4420       TCGA-05-4424       TCGA-05-4426 
"OR4A16 WILD-TYPE" "OR4A16 WILD-TYPE"   "OR4A16 MUTATED" "OR4A16 WILD-TYPE" 
      TCGA-05-4427       TCGA-05-4430       TCGA-05-4432       TCGA-05-4433 
"OR4A16 WILD-TYPE" "OR4A16 WILD-TYPE"   "OR4A16 MUTATED" "OR4A16 WILD-TYPE" 
      TCGA-05-4434       TCGA-05-5420       TCGA-05-5423       TCGA-05-5425 
"OR4A16 WILD-TYPE"   "OR4A16 MUTATED" "OR4A16 WILD-TYPE" "OR4A16 WILD-TYPE" 
      TCGA-05-5429       TCGA-05-5715       TCGA-35-3615       TCGA-35-4122 
"OR4A16 WILD-TYPE" "OR4A16 WILD-TYPE" "OR4A16 WILD-TYPE" "OR4A16 WILD-TYPE" 
      TCGA-35-4123       TCGA-35-5375       TCGA-38-4625       TCGA-38-4626 
  "OR4A16 MUTATED" "OR4A16 WILD-TYPE" "OR4A16 WILD-TYPE" "OR4A16 WILD-TYPE" 
      TCGA-38-4627       TCGA-38-4628       TCGA-38-4629       TCGA-38-4630 
"OR4A16 WILD-TYPE" "OR4A16 WILD-TYPE" "OR4A16 WILD-TYPE" "OR4A16 WILD-TYPE" 
      TCGA-38-4631       TCGA-38-4632       TCGA-38-6178       TCGA-44-2655 
"OR4A16 WILD-TYPE" "OR4A16 WILD-TYPE" "OR4A16 WILD-TYPE" "OR4A16 WILD-TYPE" 
      TCGA-44-2656       TCGA-44-2657       TCGA-44-2659       TCGA-44-2661 
"OR4A16 WILD-TYPE" "OR4A16 WILD-TYPE" "OR4A16 WILD-TYPE" "OR4A16 WILD-TYPE" 
      TCGA-44-2662       TCGA-44-2665       TCGA-44-2666       TCGA-44-2668 
"OR4A16 WILD-TYPE" "OR4A16 WILD-TYPE" "OR4A16 WILD-TYPE" "OR4A16 WILD-TYPE" 
      TCGA-44-3396       TCGA-44-3398       TCGA-44-3918       TCGA-44-3919 
"OR4A16 WILD-TYPE" "OR4A16 WILD-TYPE" "OR4A16 WILD-TYPE" "OR4A16 WILD-TYPE" 
      TCGA-44-4112       TCGA-44-5643       TCGA-44-5645       TCGA-44-6144 
"OR4A16 WILD-TYPE" "OR4A16 WILD-TYPE" "OR4A16 WILD-TYPE" "OR4A16 WILD-TYPE" 
      TCGA-44-6145       TCGA-44-6146       TCGA-44-6147       TCGA-44-6148 
"OR4A16 WILD-TYPE" "OR4A16 WILD-TYPE" "OR4A16 WILD-TYPE" "OR4A16 WILD-TYPE" 
      TCGA-44-6774       TCGA-44-6775       TCGA-44-6776       TCGA-44-6777 
"OR4A16 WILD-TYPE" "OR4A16 WILD-TYPE" "OR4A16 WILD-TYPE" "OR4A16 WILD-TYPE" 
      TCGA-44-6778       TCGA-44-6779       TCGA-49-4486       TCGA-49-4487 
"OR4A16 WILD-TYPE" "OR4A16 WILD-TYPE" "OR4A16 WILD-TYPE" "OR4A16 WILD-TYPE" 
      TCGA-49-4488       TCGA-49-4490       TCGA-49-4494       TCGA-49-4501 
"OR4A16 WILD-TYPE" "OR4A16 WILD-TYPE" "OR4A16 WILD-TYPE" "OR4A16 WILD-TYPE" 
      TCGA-49-4505       TCGA-49-4506       TCGA-49-4507       TCGA-49-4510 
"OR4A16 WILD-TYPE" "OR4A16 WILD-TYPE" "OR4A16 WILD-TYPE" "OR4A16 WILD-TYPE" 
      TCGA-49-4512       TCGA-49-4514       TCGA-49-6742       TCGA-49-6743 
"OR4A16 WILD-TYPE" "OR4A16 WILD-TYPE" "OR4A16 WILD-TYPE" "OR4A16 WILD-TYPE" 
      TCGA-49-6744       TCGA-49-6745       TCGA-50-5044       TCGA-50-5045 
"OR4A16 WILD-TYPE" "OR4A16 WILD-TYPE" "OR4A16 WILD-TYPE" "OR4A16 WILD-TYPE" 
      TCGA-50-5049       TCGA-50-5051       TCGA-50-5055       TCGA-50-5066 
"OR4A16 WILD-TYPE" "OR4A16 WILD-TYPE" "OR4A16 WILD-TYPE" "OR4A16 WILD-TYPE" 
      TCGA-50-5068       TCGA-50-5072       TCGA-50-5930       TCGA-50-5931 
"OR4A16 WILD-TYPE" "OR4A16 WILD-TYPE" "OR4A16 WILD-TYPE" "OR4A16 WILD-TYPE" 
      TCGA-50-5932       TCGA-50-5933       TCGA-50-5935       TCGA-50-5936 
"OR4A16 WILD-TYPE" "OR4A16 WILD-TYPE" "OR4A16 WILD-TYPE" "OR4A16 WILD-TYPE" 
      TCGA-50-5939       TCGA-50-5941       TCGA-50-5942       TCGA-50-5944 
"OR4A16 WILD-TYPE" "OR4A16 WILD-TYPE" "OR4A16 WILD-TYPE" "OR4A16 WILD-TYPE" 
      TCGA-50-5946       TCGA-50-6590       TCGA-50-6591       TCGA-50-6592 
"OR4A16 WILD-TYPE" "OR4A16 WILD-TYPE" "OR4A16 WILD-TYPE" "OR4A16 WILD-TYPE" 
      TCGA-50-6593       TCGA-50-6594       TCGA-50-6595       TCGA-50-6597 
  "OR4A16 MUTATED"   "OR4A16 MUTATED" "OR4A16 WILD-TYPE" "OR4A16 WILD-TYPE" 
      TCGA-55-1592       TCGA-55-1594       TCGA-55-1595       TCGA-55-1596 
"OR4A16 WILD-TYPE" "OR4A16 WILD-TYPE" "OR4A16 WILD-TYPE" "OR4A16 WILD-TYPE" 
      TCGA-55-5899       TCGA-55-6543       TCGA-55-6642       TCGA-55-6712 
"OR4A16 WILD-TYPE" "OR4A16 WILD-TYPE" "OR4A16 WILD-TYPE" "OR4A16 WILD-TYPE" 
      TCGA-64-1676       TCGA-64-1677       TCGA-64-1678       TCGA-64-1680 
"OR4A16 WILD-TYPE" "OR4A16 WILD-TYPE" "OR4A16 WILD-TYPE" "OR4A16 WILD-TYPE" 
      TCGA-64-5774       TCGA-64-5775       TCGA-64-5778       TCGA-64-5779 
"OR4A16 WILD-TYPE" "OR4A16 WILD-TYPE" "OR4A16 WILD-TYPE" "OR4A16 WILD-TYPE" 
      TCGA-64-5781       TCGA-64-5815       TCGA-67-3770       TCGA-67-3771 
  "OR4A16 MUTATED" "OR4A16 WILD-TYPE" "OR4A16 WILD-TYPE" "OR4A16 WILD-TYPE" 
      TCGA-67-3772       TCGA-67-3773       TCGA-67-3774       TCGA-67-6215 
"OR4A16 WILD-TYPE" "OR4A16 WILD-TYPE" "OR4A16 WILD-TYPE" "OR4A16 WILD-TYPE" 
      TCGA-67-6216       TCGA-67-6217       TCGA-71-6725       TCGA-73-4658 
"OR4A16 WILD-TYPE" "OR4A16 WILD-TYPE" "OR4A16 WILD-TYPE" "OR4A16 WILD-TYPE" 
      TCGA-73-4659       TCGA-73-4662       TCGA-73-4666       TCGA-73-4668 
"OR4A16 WILD-TYPE" "OR4A16 WILD-TYPE" "OR4A16 WILD-TYPE" "OR4A16 WILD-TYPE" 
      TCGA-73-4670       TCGA-73-4675       TCGA-73-4676       TCGA-73-4677 
"OR4A16 WILD-TYPE" "OR4A16 WILD-TYPE" "OR4A16 WILD-TYPE" "OR4A16 WILD-TYPE" 
      TCGA-91-6828       TCGA-91-6829       TCGA-91-6831       TCGA-91-6835 
"OR4A16 WILD-TYPE" "OR4A16 WILD-TYPE" "OR4A16 WILD-TYPE" "OR4A16 WILD-TYPE" 
      TCGA-91-6836 
"OR4A16 WILD-TYPE" 
      TCGA-05-4249       TCGA-05-4250       TCGA-05-4382       TCGA-05-4384 
"OR4A16 WILD-TYPE" "OR4A16 WILD-TYPE"   "OR4A16 MUTATED" "OR4A16 WILD-TYPE" 
      TCGA-05-4390       TCGA-05-4396       TCGA-05-4397       TCGA-05-4398 
"OR4A16 WILD-TYPE" "OR4A16 WILD-TYPE" "OR4A16 WILD-TYPE" "OR4A16 WILD-TYPE" 
      TCGA-05-4402       TCGA-05-4405       TCGA-05-4415       TCGA-05-4417 
"OR4A16 WILD-TYPE" "OR4A16 WILD-TYPE" "OR4A16 WILD-TYPE" "OR4A16 WILD-TYPE" 
      TCGA-05-4418       TCGA-05-4420       TCGA-05-4424       TCGA-05-4426 
"OR4A16 WILD-TYPE" "OR4A16 WILD-TYPE"   "OR4A16 MUTATED" "OR4A16 WILD-TYPE" 
      TCGA-05-4427       TCGA-05-4430       TCGA-05-4432       TCGA-05-4433 
"OR4A16 WILD-TYPE" "OR4A16 WILD-TYPE"   "OR4A16 MUTATED" "OR4A16 WILD-TYPE" 
      TCGA-05-4434       TCGA-05-5420       TCGA-05-5423       TCGA-05-5425 
"OR4A16 WILD-TYPE"   "OR4A16 MUTATED" "OR4A16 WILD-TYPE" "OR4A16 WILD-TYPE" 
      TCGA-05-5429       TCGA-05-5715       TCGA-35-3615       TCGA-35-4122 
"OR4A16 WILD-TYPE" "OR4A16 WILD-TYPE" "OR4A16 WILD-TYPE" "OR4A16 WILD-TYPE" 
      TCGA-35-4123       TCGA-35-5375       TCGA-38-4625       TCGA-38-4626 
  "OR4A16 MUTATED" "OR4A16 WILD-TYPE" "OR4A16 WILD-TYPE" "OR4A16 WILD-TYPE" 
      TCGA-38-4627       TCGA-38-4628       TCGA-38-4629       TCGA-38-4630 
"OR4A16 WILD-TYPE" "OR4A16 WILD-TYPE" "OR4A16 WILD-TYPE" "OR4A16 WILD-TYPE" 
      TCGA-38-4631       TCGA-38-4632       TCGA-38-6178       TCGA-44-2655 
"OR4A16 WILD-TYPE" "OR4A16 WILD-TYPE" "OR4A16 WILD-TYPE" "OR4A16 WILD-TYPE" 
      TCGA-44-2656       TCGA-44-2657       TCGA-44-2659       TCGA-44-2661 
"OR4A16 WILD-TYPE" "OR4A16 WILD-TYPE" "OR4A16 WILD-TYPE" "OR4A16 WILD-TYPE" 
      TCGA-44-2662       TCGA-44-2665       TCGA-44-2666       TCGA-44-2668 
"OR4A16 WILD-TYPE" "OR4A16 WILD-TYPE" "OR4A16 WILD-TYPE" "OR4A16 WILD-TYPE" 
      TCGA-44-3396       TCGA-44-3398       TCGA-44-3918       TCGA-44-3919 
"OR4A16 WILD-TYPE" "OR4A16 WILD-TYPE" "OR4A16 WILD-TYPE" "OR4A16 WILD-TYPE" 
      TCGA-44-4112       TCGA-44-5643       TCGA-44-5645       TCGA-44-6144 
"OR4A16 WILD-TYPE" "OR4A16 WILD-TYPE" "OR4A16 WILD-TYPE" "OR4A16 WILD-TYPE" 
      TCGA-44-6145       TCGA-44-6146       TCGA-44-6147       TCGA-44-6148 
"OR4A16 WILD-TYPE" "OR4A16 WILD-TYPE" "OR4A16 WILD-TYPE" "OR4A16 WILD-TYPE" 
      TCGA-44-6774       TCGA-44-6775       TCGA-44-6776       TCGA-44-6777 
"OR4A16 WILD-TYPE" "OR4A16 WILD-TYPE" "OR4A16 WILD-TYPE" "OR4A16 WILD-TYPE" 
      TCGA-44-6778       TCGA-44-6779       TCGA-49-4486       TCGA-49-4487 
"OR4A16 WILD-TYPE" "OR4A16 WILD-TYPE" "OR4A16 WILD-TYPE" "OR4A16 WILD-TYPE" 
      TCGA-49-4488       TCGA-49-4490       TCGA-49-4494       TCGA-49-4501 
"OR4A16 WILD-TYPE" "OR4A16 WILD-TYPE" "OR4A16 WILD-TYPE" "OR4A16 WILD-TYPE" 
      TCGA-49-4505       TCGA-49-4506       TCGA-49-4507       TCGA-49-4510 
"OR4A16 WILD-TYPE" "OR4A16 WILD-TYPE" "OR4A16 WILD-TYPE" "OR4A16 WILD-TYPE" 
      TCGA-49-4512       TCGA-49-4514       TCGA-49-6742       TCGA-49-6743 
"OR4A16 WILD-TYPE" "OR4A16 WILD-TYPE" "OR4A16 WILD-TYPE" "OR4A16 WILD-TYPE" 
      TCGA-49-6744       TCGA-49-6745       TCGA-50-5044       TCGA-50-5045 
"OR4A16 WILD-TYPE" "OR4A16 WILD-TYPE" "OR4A16 WILD-TYPE" "OR4A16 WILD-TYPE" 
      TCGA-50-5049       TCGA-50-5051       TCGA-50-5055       TCGA-50-5066 
"OR4A16 WILD-TYPE" "OR4A16 WILD-TYPE" "OR4A16 WILD-TYPE" "OR4A16 WILD-TYPE" 
      TCGA-50-5068       TCGA-50-5072       TCGA-50-5930       TCGA-50-5931 
"OR4A16 WILD-TYPE" "OR4A16 WILD-TYPE" "OR4A16 WILD-TYPE" "OR4A16 WILD-TYPE" 
      TCGA-50-5932       TCGA-50-5933       TCGA-50-5935       TCGA-50-5936 
"OR4A16 WILD-TYPE" "OR4A16 WILD-TYPE" "OR4A16 WILD-TYPE" "OR4A16 WILD-TYPE" 
      TCGA-50-5939       TCGA-50-5941       TCGA-50-5942       TCGA-50-5944 
"OR4A16 WILD-TYPE" "OR4A16 WILD-TYPE" "OR4A16 WILD-TYPE" "OR4A16 WILD-TYPE" 
      TCGA-50-5946       TCGA-50-6590       TCGA-50-6591       TCGA-50-6592 
"OR4A16 WILD-TYPE" "OR4A16 WILD-TYPE" "OR4A16 WILD-TYPE" "OR4A16 WILD-TYPE" 
      TCGA-50-6593       TCGA-50-6594       TCGA-50-6595       TCGA-50-6597 
  "OR4A16 MUTATED"   "OR4A16 MUTATED" "OR4A16 WILD-TYPE" "OR4A16 WILD-TYPE" 
      TCGA-55-1592       TCGA-55-1594       TCGA-55-1595       TCGA-55-1596 
"OR4A16 WILD-TYPE" "OR4A16 WILD-TYPE" "OR4A16 WILD-TYPE" "OR4A16 WILD-TYPE" 
      TCGA-55-5899       TCGA-55-6543       TCGA-55-6642       TCGA-55-6712 
"OR4A16 WILD-TYPE" "OR4A16 WILD-TYPE" "OR4A16 WILD-TYPE" "OR4A16 WILD-TYPE" 
      TCGA-64-1676       TCGA-64-1677       TCGA-64-1678       TCGA-64-1680 
"OR4A16 WILD-TYPE" "OR4A16 WILD-TYPE" "OR4A16 WILD-TYPE" "OR4A16 WILD-TYPE" 
      TCGA-64-5774       TCGA-64-5775       TCGA-64-5778       TCGA-64-5779 
"OR4A16 WILD-TYPE" "OR4A16 WILD-TYPE" "OR4A16 WILD-TYPE" "OR4A16 WILD-TYPE" 
      TCGA-64-5781       TCGA-64-5815       TCGA-67-3770       TCGA-67-3771 
  "OR4A16 MUTATED" "OR4A16 WILD-TYPE" "OR4A16 WILD-TYPE" "OR4A16 WILD-TYPE" 
      TCGA-67-3772       TCGA-67-3773       TCGA-67-3774       TCGA-67-6215 
"OR4A16 WILD-TYPE" "OR4A16 WILD-TYPE" "OR4A16 WILD-TYPE" "OR4A16 WILD-TYPE" 
      TCGA-67-6216       TCGA-67-6217       TCGA-71-6725       TCGA-73-4658 
"OR4A16 WILD-TYPE" "OR4A16 WILD-TYPE" "OR4A16 WILD-TYPE" "OR4A16 WILD-TYPE" 
      TCGA-73-4659       TCGA-73-4662       TCGA-73-4666       TCGA-73-4668 
"OR4A16 WILD-TYPE" "OR4A16 WILD-TYPE" "OR4A16 WILD-TYPE" "OR4A16 WILD-TYPE" 
      TCGA-73-4670       TCGA-73-4675       TCGA-73-4676       TCGA-73-4677 
"OR4A16 WILD-TYPE" "OR4A16 WILD-TYPE" "OR4A16 WILD-TYPE" "OR4A16 WILD-TYPE" 
      TCGA-91-6828       TCGA-91-6829       TCGA-91-6831       TCGA-91-6835 
"OR4A16 WILD-TYPE" "OR4A16 WILD-TYPE" "OR4A16 WILD-TYPE" "OR4A16 WILD-TYPE" 
      TCGA-91-6836 
"OR4A16 WILD-TYPE" 
[1] "hr=" "1.1"
D238V2, continuous
D238V3, binary
[1] "tbl2"
                  cls
clus               [,1] [,2]
  OR4A16 MUTATED      3    5
  OR4A16 WILD-TYPE   90   74
        clus
vv       OR4A16 MUTATED OR4A16 WILD-TYPE
  FEMALE              3               90
  MALE                5               74
D238V4, continuous
[1] "Remove cluster labels:" "OR4A16 MUTATED"        
clus
  OR4A16 MUTATED OR4A16 WILD-TYPE 
               1               11 
      TCGA-35-4122       TCGA-35-5375       TCGA-64-1677       TCGA-64-5778 
"OR4A16 WILD-TYPE" "OR4A16 WILD-TYPE" "OR4A16 WILD-TYPE" "OR4A16 WILD-TYPE" 
      TCGA-71-6725       TCGA-73-4659       TCGA-73-4662       TCGA-73-4666 
"OR4A16 WILD-TYPE" "OR4A16 WILD-TYPE" "OR4A16 WILD-TYPE" "OR4A16 WILD-TYPE" 
      TCGA-73-4668       TCGA-73-4676       TCGA-75-5122 
"OR4A16 WILD-TYPE" "OR4A16 WILD-TYPE" "OR4A16 WILD-TYPE" 
D238V5, multiclass
D238V6, multiclass
    clus
vv   OR4A16 MUTATED OR4A16 WILD-TYPE
  T1              2               39
  T2              4              104
  T3              2               12
  T4              0                8
D238V7, multiclass
       clus
vv      OR4A16 MUTATED OR4A16 WILD-TYPE
  N0                 4               91
  N1                 1               36
  N2+N3              3               32
D238V8, multiclass
    clus
vv   OR4A16 MUTATED OR4A16 WILD-TYPE
  M0              8              129
  M1              0                9
  MX              0               22
D238V9, multiclass
     clus
vv    OR4A16 MUTATED OR4A16 WILD-TYPE
  I                3               85
  II               2               31
  III              3               36
  IV               0                9
D238V10, binary
[1] "tbl2"
                  cls
clus               [,1] [,2]
  OR4A16 MUTATED      0    8
  OR4A16 WILD-TYPE   16  148
     clus
vv    OR4A16 MUTATED OR4A16 WILD-TYPE
  NO               0               16
  YES              8              148
D238V11, continuous
D238V12, continuous
D238V13, multiclass
                                             clus
vv                                            OR4A16 MUTATED OR4A16 WILD-TYPE
  CURRENT REFORMED SMOKER FOR < OR = 15 YEARS              7               55
  CURRENT REFORMED SMOKER FOR > 15 YEARS                   0               46
  CURRENT SMOKER                                           1               27
  LIFELONG NON-SMOKER                                      0               24
D238V14, continuous

Clustering(239) Variable = LILRB2 MUTATION ANALYSIS
D239V1, survival
                  sevent
clus2               0  1
  LILRB2 MUTATED    6  1
  LILRB2 WILD-TYPE 93 49
  LILRB2 MUTATED LILRB2 WILD-TYPE 
               7              142 
  LILRB2 MUTATED LILRB2 WILD-TYPE 
               1               49 
$`LILRB2 MUTATED`
TCGA-05-4249 TCGA-05-4390 TCGA-44-4112 TCGA-50-5066 TCGA-55-1592 TCGA-64-5815 
       38.07        37.02         4.60         9.76        23.05         7.33 
TCGA-73-4662 
       29.95 

$`LILRB2 WILD-TYPE`
TCGA-05-4250 TCGA-05-4382 TCGA-05-4384 TCGA-05-4396 TCGA-05-4397 TCGA-05-4398 
        3.98        19.92        14.01         9.96        24.03        47.05 
TCGA-05-4402 TCGA-05-4405 TCGA-05-4415 TCGA-05-4417 TCGA-05-4418 TCGA-05-4420 
        8.02        20.05         2.96        14.93         8.98        29.95 
TCGA-05-4424 TCGA-05-4426 TCGA-05-4427 TCGA-05-4430 TCGA-05-4432 TCGA-05-4433 
       30.02        26.01        26.01        25.02        25.02        24.00 
TCGA-05-4434 TCGA-05-5420 TCGA-05-5423 TCGA-05-5425 TCGA-05-5429 TCGA-05-5715 
       15.02         1.02         4.96         2.96         0.99         2.04 
TCGA-35-3615 TCGA-35-4122 TCGA-35-4123 TCGA-35-5375 TCGA-38-4625 TCGA-38-4626 
        0.46         7.36         5.95         8.68        47.61        85.32 
TCGA-38-4627 TCGA-38-4628 TCGA-38-4629 TCGA-38-4630 TCGA-38-4631 TCGA-38-4632 
       37.71        49.02        28.37        35.28        11.64        44.61 
TCGA-38-6178 TCGA-44-2655 TCGA-44-2656 TCGA-44-2657 TCGA-44-2659 TCGA-44-2661 
        5.19        18.87        19.10        13.15        17.39         3.39 
TCGA-44-2662 TCGA-44-2665 TCGA-44-2666 TCGA-44-2668 TCGA-44-3396 TCGA-44-3398 
       15.78        13.15         3.19         8.09        10.22         8.32 
TCGA-44-3918 TCGA-44-3919 TCGA-44-5643 TCGA-44-5645 TCGA-44-6144 TCGA-44-6145 
        6.44         6.21         3.48         6.84         0.30         3.35 
TCGA-44-6146 TCGA-44-6147 TCGA-44-6148 TCGA-44-6774 TCGA-44-6775 TCGA-44-6776 
        9.93         7.76         3.12         5.42         2.70        63.72 
TCGA-44-6777 TCGA-44-6778 TCGA-44-6779 TCGA-49-4486 TCGA-49-4487 TCGA-49-4488 
       32.45        36.49        16.41        76.21        28.11        28.57 
TCGA-49-4490 TCGA-49-4494 TCGA-49-4501 TCGA-49-4505 TCGA-49-4506 TCGA-49-4507 
       12.66        35.54        46.72        14.07        32.84         8.81 
TCGA-49-4510 TCGA-49-4512 TCGA-49-4514 TCGA-49-6742 TCGA-49-6743 TCGA-49-6744 
       29.46        29.75        43.20        15.02        12.13        12.99 
TCGA-49-6745 TCGA-50-5044 TCGA-50-5045 TCGA-50-5049 TCGA-50-5051 TCGA-50-5055 
        4.93        20.48        71.47        48.82        14.96        25.81 
TCGA-50-5068 TCGA-50-5072 TCGA-50-5930 TCGA-50-5931 TCGA-50-5932 TCGA-50-5933 
       49.28         8.05         9.27         8.78        35.87        77.88 
TCGA-50-5935 TCGA-50-5936 TCGA-50-5939 TCGA-50-5941 TCGA-50-5942 TCGA-50-5944 
       21.47         8.45        15.12         9.37         4.44        12.26 
TCGA-50-5946 TCGA-50-6590 TCGA-50-6591 TCGA-50-6592 TCGA-50-6593 TCGA-50-6594 
       11.47        42.31         3.88        25.51        11.05        12.16 
TCGA-50-6595 TCGA-50-6597 TCGA-55-1594 TCGA-55-1595 TCGA-55-1596 TCGA-55-5899 
        6.21        33.37        38.73        48.62        45.17         2.86 
TCGA-55-6543 TCGA-55-6642 TCGA-55-6712 TCGA-64-1676 TCGA-64-1677 TCGA-64-1678 
        0.07        32.61         0.79        56.81        20.65        39.09 
TCGA-64-1680 TCGA-64-5774 TCGA-64-5775 TCGA-64-5778 TCGA-64-5779 TCGA-64-5781 
       37.02        83.84         0.10        30.44        16.67        39.52 
TCGA-67-3770 TCGA-67-3771 TCGA-67-3772 TCGA-67-3773 TCGA-67-3774 TCGA-67-6215 
        0.99         1.97         0.59         2.04         0.59         0.89 
TCGA-67-6216 TCGA-67-6217 TCGA-71-6725 TCGA-73-4658 TCGA-73-4659 TCGA-73-4666 
        0.69        13.87         2.01        52.57        23.38        20.28 
TCGA-73-4668 TCGA-73-4670 TCGA-73-4675 TCGA-73-4676 TCGA-73-4677 TCGA-91-6828 
       15.35         0.46         1.32         4.01         1.25         1.22 
TCGA-91-6829 TCGA-91-6831 TCGA-91-6835 TCGA-91-6836 
       41.33         1.28         1.15         0.36 

  LILRB2 MUTATED LILRB2 WILD-TYPE 
            4.60             0.07 
  LILRB2 MUTATED LILRB2 WILD-TYPE 
           38.07            85.32 
  LILRB2 MUTATED LILRB2 WILD-TYPE 
           23.05            13.51 
[1] "4.6 - 38.1 (23.1)" "0.1 - 85.3 (13.5)"
      TCGA-05-4249       TCGA-05-4250       TCGA-05-4382       TCGA-05-4384 
  "LILRB2 MUTATED" "LILRB2 WILD-TYPE" "LILRB2 WILD-TYPE" "LILRB2 WILD-TYPE" 
      TCGA-05-4390       TCGA-05-4396       TCGA-05-4397       TCGA-05-4398 
  "LILRB2 MUTATED" "LILRB2 WILD-TYPE" "LILRB2 WILD-TYPE" "LILRB2 WILD-TYPE" 
      TCGA-05-4402       TCGA-05-4405       TCGA-05-4415       TCGA-05-4417 
"LILRB2 WILD-TYPE" "LILRB2 WILD-TYPE" "LILRB2 WILD-TYPE" "LILRB2 WILD-TYPE" 
      TCGA-05-4418       TCGA-05-4420       TCGA-05-4424       TCGA-05-4426 
"LILRB2 WILD-TYPE" "LILRB2 WILD-TYPE" "LILRB2 WILD-TYPE" "LILRB2 WILD-TYPE" 
      TCGA-05-4427       TCGA-05-4430       TCGA-05-4432       TCGA-05-4433 
"LILRB2 WILD-TYPE" "LILRB2 WILD-TYPE" "LILRB2 WILD-TYPE" "LILRB2 WILD-TYPE" 
      TCGA-05-4434       TCGA-05-5420       TCGA-05-5423       TCGA-05-5425 
"LILRB2 WILD-TYPE" "LILRB2 WILD-TYPE" "LILRB2 WILD-TYPE" "LILRB2 WILD-TYPE" 
      TCGA-05-5429       TCGA-05-5715       TCGA-35-3615       TCGA-35-4122 
"LILRB2 WILD-TYPE" "LILRB2 WILD-TYPE" "LILRB2 WILD-TYPE" "LILRB2 WILD-TYPE" 
      TCGA-35-4123       TCGA-35-5375       TCGA-38-4625       TCGA-38-4626 
"LILRB2 WILD-TYPE" "LILRB2 WILD-TYPE" "LILRB2 WILD-TYPE" "LILRB2 WILD-TYPE" 
      TCGA-38-4627       TCGA-38-4628       TCGA-38-4629       TCGA-38-4630 
"LILRB2 WILD-TYPE" "LILRB2 WILD-TYPE" "LILRB2 WILD-TYPE" "LILRB2 WILD-TYPE" 
      TCGA-38-4631       TCGA-38-4632       TCGA-38-6178       TCGA-44-2655 
"LILRB2 WILD-TYPE" "LILRB2 WILD-TYPE" "LILRB2 WILD-TYPE" "LILRB2 WILD-TYPE" 
      TCGA-44-2656       TCGA-44-2657       TCGA-44-2659       TCGA-44-2661 
"LILRB2 WILD-TYPE" "LILRB2 WILD-TYPE" "LILRB2 WILD-TYPE" "LILRB2 WILD-TYPE" 
      TCGA-44-2662       TCGA-44-2665       TCGA-44-2666       TCGA-44-2668 
"LILRB2 WILD-TYPE" "LILRB2 WILD-TYPE" "LILRB2 WILD-TYPE" "LILRB2 WILD-TYPE" 
      TCGA-44-3396       TCGA-44-3398       TCGA-44-3918       TCGA-44-3919 
"LILRB2 WILD-TYPE" "LILRB2 WILD-TYPE" "LILRB2 WILD-TYPE" "LILRB2 WILD-TYPE" 
      TCGA-44-4112       TCGA-44-5643       TCGA-44-5645       TCGA-44-6144 
  "LILRB2 MUTATED" "LILRB2 WILD-TYPE" "LILRB2 WILD-TYPE" "LILRB2 WILD-TYPE" 
      TCGA-44-6145       TCGA-44-6146       TCGA-44-6147       TCGA-44-6148 
"LILRB2 WILD-TYPE" "LILRB2 WILD-TYPE" "LILRB2 WILD-TYPE" "LILRB2 WILD-TYPE" 
      TCGA-44-6774       TCGA-44-6775       TCGA-44-6776       TCGA-44-6777 
"LILRB2 WILD-TYPE" "LILRB2 WILD-TYPE" "LILRB2 WILD-TYPE" "LILRB2 WILD-TYPE" 
      TCGA-44-6778       TCGA-44-6779       TCGA-49-4486       TCGA-49-4487 
"LILRB2 WILD-TYPE" "LILRB2 WILD-TYPE" "LILRB2 WILD-TYPE" "LILRB2 WILD-TYPE" 
      TCGA-49-4488       TCGA-49-4490       TCGA-49-4494       TCGA-49-4501 
"LILRB2 WILD-TYPE" "LILRB2 WILD-TYPE" "LILRB2 WILD-TYPE" "LILRB2 WILD-TYPE" 
      TCGA-49-4505       TCGA-49-4506       TCGA-49-4507       TCGA-49-4510 
"LILRB2 WILD-TYPE" "LILRB2 WILD-TYPE" "LILRB2 WILD-TYPE" "LILRB2 WILD-TYPE" 
      TCGA-49-4512       TCGA-49-4514       TCGA-49-6742       TCGA-49-6743 
"LILRB2 WILD-TYPE" "LILRB2 WILD-TYPE" "LILRB2 WILD-TYPE" "LILRB2 WILD-TYPE" 
      TCGA-49-6744       TCGA-49-6745       TCGA-50-5044       TCGA-50-5045 
"LILRB2 WILD-TYPE" "LILRB2 WILD-TYPE" "LILRB2 WILD-TYPE" "LILRB2 WILD-TYPE" 
      TCGA-50-5049       TCGA-50-5051       TCGA-50-5055       TCGA-50-5066 
"LILRB2 WILD-TYPE" "LILRB2 WILD-TYPE" "LILRB2 WILD-TYPE"   "LILRB2 MUTATED" 
      TCGA-50-5068       TCGA-50-5072       TCGA-50-5930       TCGA-50-5931 
"LILRB2 WILD-TYPE" "LILRB2 WILD-TYPE" "LILRB2 WILD-TYPE" "LILRB2 WILD-TYPE" 
      TCGA-50-5932       TCGA-50-5933       TCGA-50-5935       TCGA-50-5936 
"LILRB2 WILD-TYPE" "LILRB2 WILD-TYPE" "LILRB2 WILD-TYPE" "LILRB2 WILD-TYPE" 
      TCGA-50-5939       TCGA-50-5941       TCGA-50-5942       TCGA-50-5944 
"LILRB2 WILD-TYPE" "LILRB2 WILD-TYPE" "LILRB2 WILD-TYPE" "LILRB2 WILD-TYPE" 
      TCGA-50-5946       TCGA-50-6590       TCGA-50-6591       TCGA-50-6592 
"LILRB2 WILD-TYPE" "LILRB2 WILD-TYPE" "LILRB2 WILD-TYPE" "LILRB2 WILD-TYPE" 
      TCGA-50-6593       TCGA-50-6594       TCGA-50-6595       TCGA-50-6597 
"LILRB2 WILD-TYPE" "LILRB2 WILD-TYPE" "LILRB2 WILD-TYPE" "LILRB2 WILD-TYPE" 
      TCGA-55-1592       TCGA-55-1594       TCGA-55-1595       TCGA-55-1596 
  "LILRB2 MUTATED" "LILRB2 WILD-TYPE" "LILRB2 WILD-TYPE" "LILRB2 WILD-TYPE" 
      TCGA-55-5899       TCGA-55-6543       TCGA-55-6642       TCGA-55-6712 
"LILRB2 WILD-TYPE" "LILRB2 WILD-TYPE" "LILRB2 WILD-TYPE" "LILRB2 WILD-TYPE" 
      TCGA-64-1676       TCGA-64-1677       TCGA-64-1678       TCGA-64-1680 
"LILRB2 WILD-TYPE" "LILRB2 WILD-TYPE" "LILRB2 WILD-TYPE" "LILRB2 WILD-TYPE" 
      TCGA-64-5774       TCGA-64-5775       TCGA-64-5778       TCGA-64-5779 
"LILRB2 WILD-TYPE" "LILRB2 WILD-TYPE" "LILRB2 WILD-TYPE" "LILRB2 WILD-TYPE" 
      TCGA-64-5781       TCGA-64-5815       TCGA-67-3770       TCGA-67-3771 
"LILRB2 WILD-TYPE"   "LILRB2 MUTATED" "LILRB2 WILD-TYPE" "LILRB2 WILD-TYPE" 
      TCGA-67-3772       TCGA-67-3773       TCGA-67-3774       TCGA-67-6215 
"LILRB2 WILD-TYPE" "LILRB2 WILD-TYPE" "LILRB2 WILD-TYPE" "LILRB2 WILD-TYPE" 
      TCGA-67-6216       TCGA-67-6217       TCGA-71-6725       TCGA-73-4658 
"LILRB2 WILD-TYPE" "LILRB2 WILD-TYPE" "LILRB2 WILD-TYPE" "LILRB2 WILD-TYPE" 
      TCGA-73-4659       TCGA-73-4662       TCGA-73-4666       TCGA-73-4668 
"LILRB2 WILD-TYPE"   "LILRB2 MUTATED" "LILRB2 WILD-TYPE" "LILRB2 WILD-TYPE" 
      TCGA-73-4670       TCGA-73-4675       TCGA-73-4676       TCGA-73-4677 
"LILRB2 WILD-TYPE" "LILRB2 WILD-TYPE" "LILRB2 WILD-TYPE" "LILRB2 WILD-TYPE" 
      TCGA-91-6828       TCGA-91-6829       TCGA-91-6831       TCGA-91-6835 
"LILRB2 WILD-TYPE" "LILRB2 WILD-TYPE" "LILRB2 WILD-TYPE" "LILRB2 WILD-TYPE" 
      TCGA-91-6836 
"LILRB2 WILD-TYPE" 
      TCGA-05-4249       TCGA-05-4250       TCGA-05-4382       TCGA-05-4384 
  "LILRB2 MUTATED" "LILRB2 WILD-TYPE" "LILRB2 WILD-TYPE" "LILRB2 WILD-TYPE" 
      TCGA-05-4390       TCGA-05-4396       TCGA-05-4397       TCGA-05-4398 
  "LILRB2 MUTATED" "LILRB2 WILD-TYPE" "LILRB2 WILD-TYPE" "LILRB2 WILD-TYPE" 
      TCGA-05-4402       TCGA-05-4405       TCGA-05-4415       TCGA-05-4417 
"LILRB2 WILD-TYPE" "LILRB2 WILD-TYPE" "LILRB2 WILD-TYPE" "LILRB2 WILD-TYPE" 
      TCGA-05-4418       TCGA-05-4420       TCGA-05-4424       TCGA-05-4426 
"LILRB2 WILD-TYPE" "LILRB2 WILD-TYPE" "LILRB2 WILD-TYPE" "LILRB2 WILD-TYPE" 
      TCGA-05-4427       TCGA-05-4430       TCGA-05-4432       TCGA-05-4433 
"LILRB2 WILD-TYPE" "LILRB2 WILD-TYPE" "LILRB2 WILD-TYPE" "LILRB2 WILD-TYPE" 
      TCGA-05-4434       TCGA-05-5420       TCGA-05-5423       TCGA-05-5425 
"LILRB2 WILD-TYPE" "LILRB2 WILD-TYPE" "LILRB2 WILD-TYPE" "LILRB2 WILD-TYPE" 
      TCGA-05-5429       TCGA-05-5715       TCGA-35-3615       TCGA-35-4122 
"LILRB2 WILD-TYPE" "LILRB2 WILD-TYPE" "LILRB2 WILD-TYPE" "LILRB2 WILD-TYPE" 
      TCGA-35-4123       TCGA-35-5375       TCGA-38-4625       TCGA-38-4626 
"LILRB2 WILD-TYPE" "LILRB2 WILD-TYPE" "LILRB2 WILD-TYPE" "LILRB2 WILD-TYPE" 
      TCGA-38-4627       TCGA-38-4628       TCGA-38-4629       TCGA-38-4630 
"LILRB2 WILD-TYPE" "LILRB2 WILD-TYPE" "LILRB2 WILD-TYPE" "LILRB2 WILD-TYPE" 
      TCGA-38-4631       TCGA-38-4632       TCGA-38-6178       TCGA-44-2655 
"LILRB2 WILD-TYPE" "LILRB2 WILD-TYPE" "LILRB2 WILD-TYPE" "LILRB2 WILD-TYPE" 
      TCGA-44-2656       TCGA-44-2657       TCGA-44-2659       TCGA-44-2661 
"LILRB2 WILD-TYPE" "LILRB2 WILD-TYPE" "LILRB2 WILD-TYPE" "LILRB2 WILD-TYPE" 
      TCGA-44-2662       TCGA-44-2665       TCGA-44-2666       TCGA-44-2668 
"LILRB2 WILD-TYPE" "LILRB2 WILD-TYPE" "LILRB2 WILD-TYPE" "LILRB2 WILD-TYPE" 
      TCGA-44-3396       TCGA-44-3398       TCGA-44-3918       TCGA-44-3919 
"LILRB2 WILD-TYPE" "LILRB2 WILD-TYPE" "LILRB2 WILD-TYPE" "LILRB2 WILD-TYPE" 
      TCGA-44-4112       TCGA-44-5643       TCGA-44-5645       TCGA-44-6144 
  "LILRB2 MUTATED" "LILRB2 WILD-TYPE" "LILRB2 WILD-TYPE" "LILRB2 WILD-TYPE" 
      TCGA-44-6145       TCGA-44-6146       TCGA-44-6147       TCGA-44-6148 
"LILRB2 WILD-TYPE" "LILRB2 WILD-TYPE" "LILRB2 WILD-TYPE" "LILRB2 WILD-TYPE" 
      TCGA-44-6774       TCGA-44-6775       TCGA-44-6776       TCGA-44-6777 
"LILRB2 WILD-TYPE" "LILRB2 WILD-TYPE" "LILRB2 WILD-TYPE" "LILRB2 WILD-TYPE" 
      TCGA-44-6778       TCGA-44-6779       TCGA-49-4486       TCGA-49-4487 
"LILRB2 WILD-TYPE" "LILRB2 WILD-TYPE" "LILRB2 WILD-TYPE" "LILRB2 WILD-TYPE" 
      TCGA-49-4488       TCGA-49-4490       TCGA-49-4494       TCGA-49-4501 
"LILRB2 WILD-TYPE" "LILRB2 WILD-TYPE" "LILRB2 WILD-TYPE" "LILRB2 WILD-TYPE" 
      TCGA-49-4505       TCGA-49-4506       TCGA-49-4507       TCGA-49-4510 
"LILRB2 WILD-TYPE" "LILRB2 WILD-TYPE" "LILRB2 WILD-TYPE" "LILRB2 WILD-TYPE" 
      TCGA-49-4512       TCGA-49-4514       TCGA-49-6742       TCGA-49-6743 
"LILRB2 WILD-TYPE" "LILRB2 WILD-TYPE" "LILRB2 WILD-TYPE" "LILRB2 WILD-TYPE" 
      TCGA-49-6744       TCGA-49-6745       TCGA-50-5044       TCGA-50-5045 
"LILRB2 WILD-TYPE" "LILRB2 WILD-TYPE" "LILRB2 WILD-TYPE" "LILRB2 WILD-TYPE" 
      TCGA-50-5049       TCGA-50-5051       TCGA-50-5055       TCGA-50-5066 
"LILRB2 WILD-TYPE" "LILRB2 WILD-TYPE" "LILRB2 WILD-TYPE"   "LILRB2 MUTATED" 
      TCGA-50-5068       TCGA-50-5072       TCGA-50-5930       TCGA-50-5931 
"LILRB2 WILD-TYPE" "LILRB2 WILD-TYPE" "LILRB2 WILD-TYPE" "LILRB2 WILD-TYPE" 
      TCGA-50-5932       TCGA-50-5933       TCGA-50-5935       TCGA-50-5936 
"LILRB2 WILD-TYPE" "LILRB2 WILD-TYPE" "LILRB2 WILD-TYPE" "LILRB2 WILD-TYPE" 
      TCGA-50-5939       TCGA-50-5941       TCGA-50-5942       TCGA-50-5944 
"LILRB2 WILD-TYPE" "LILRB2 WILD-TYPE" "LILRB2 WILD-TYPE" "LILRB2 WILD-TYPE" 
      TCGA-50-5946       TCGA-50-6590       TCGA-50-6591       TCGA-50-6592 
"LILRB2 WILD-TYPE" "LILRB2 WILD-TYPE" "LILRB2 WILD-TYPE" "LILRB2 WILD-TYPE" 
      TCGA-50-6593       TCGA-50-6594       TCGA-50-6595       TCGA-50-6597 
"LILRB2 WILD-TYPE" "LILRB2 WILD-TYPE" "LILRB2 WILD-TYPE" "LILRB2 WILD-TYPE" 
      TCGA-55-1592       TCGA-55-1594       TCGA-55-1595       TCGA-55-1596 
  "LILRB2 MUTATED" "LILRB2 WILD-TYPE" "LILRB2 WILD-TYPE" "LILRB2 WILD-TYPE" 
      TCGA-55-5899       TCGA-55-6543       TCGA-55-6642       TCGA-55-6712 
"LILRB2 WILD-TYPE" "LILRB2 WILD-TYPE" "LILRB2 WILD-TYPE" "LILRB2 WILD-TYPE" 
      TCGA-64-1676       TCGA-64-1677       TCGA-64-1678       TCGA-64-1680 
"LILRB2 WILD-TYPE" "LILRB2 WILD-TYPE" "LILRB2 WILD-TYPE" "LILRB2 WILD-TYPE" 
      TCGA-64-5774       TCGA-64-5775       TCGA-64-5778       TCGA-64-5779 
"LILRB2 WILD-TYPE" "LILRB2 WILD-TYPE" "LILRB2 WILD-TYPE" "LILRB2 WILD-TYPE" 
      TCGA-64-5781       TCGA-64-5815       TCGA-67-3770       TCGA-67-3771 
"LILRB2 WILD-TYPE"   "LILRB2 MUTATED" "LILRB2 WILD-TYPE" "LILRB2 WILD-TYPE" 
      TCGA-67-3772       TCGA-67-3773       TCGA-67-3774       TCGA-67-6215 
"LILRB2 WILD-TYPE" "LILRB2 WILD-TYPE" "LILRB2 WILD-TYPE" "LILRB2 WILD-TYPE" 
      TCGA-67-6216       TCGA-67-6217       TCGA-71-6725       TCGA-73-4658 
"LILRB2 WILD-TYPE" "LILRB2 WILD-TYPE" "LILRB2 WILD-TYPE" "LILRB2 WILD-TYPE" 
      TCGA-73-4659       TCGA-73-4662       TCGA-73-4666       TCGA-73-4668 
"LILRB2 WILD-TYPE"   "LILRB2 MUTATED" "LILRB2 WILD-TYPE" "LILRB2 WILD-TYPE" 
      TCGA-73-4670       TCGA-73-4675       TCGA-73-4676       TCGA-73-4677 
"LILRB2 WILD-TYPE" "LILRB2 WILD-TYPE" "LILRB2 WILD-TYPE" "LILRB2 WILD-TYPE" 
      TCGA-91-6828       TCGA-91-6829       TCGA-91-6831       TCGA-91-6835 
"LILRB2 WILD-TYPE" "LILRB2 WILD-TYPE" "LILRB2 WILD-TYPE" "LILRB2 WILD-TYPE" 
      TCGA-91-6836 
"LILRB2 WILD-TYPE" 
      TCGA-05-4249       TCGA-05-4250       TCGA-05-4382       TCGA-05-4384 
  "LILRB2 MUTATED" "LILRB2 WILD-TYPE" "LILRB2 WILD-TYPE" "LILRB2 WILD-TYPE" 
      TCGA-05-4390       TCGA-05-4396       TCGA-05-4397       TCGA-05-4398 
  "LILRB2 MUTATED" "LILRB2 WILD-TYPE" "LILRB2 WILD-TYPE" "LILRB2 WILD-TYPE" 
      TCGA-05-4402       TCGA-05-4405       TCGA-05-4415       TCGA-05-4417 
"LILRB2 WILD-TYPE" "LILRB2 WILD-TYPE" "LILRB2 WILD-TYPE" "LILRB2 WILD-TYPE" 
      TCGA-05-4418       TCGA-05-4420       TCGA-05-4424       TCGA-05-4426 
"LILRB2 WILD-TYPE" "LILRB2 WILD-TYPE" "LILRB2 WILD-TYPE" "LILRB2 WILD-TYPE" 
      TCGA-05-4427       TCGA-05-4430       TCGA-05-4432       TCGA-05-4433 
"LILRB2 WILD-TYPE" "LILRB2 WILD-TYPE" "LILRB2 WILD-TYPE" "LILRB2 WILD-TYPE" 
      TCGA-05-4434       TCGA-05-5420       TCGA-05-5423       TCGA-05-5425 
"LILRB2 WILD-TYPE" "LILRB2 WILD-TYPE" "LILRB2 WILD-TYPE" "LILRB2 WILD-TYPE" 
      TCGA-05-5429       TCGA-05-5715       TCGA-35-3615       TCGA-35-4122 
"LILRB2 WILD-TYPE" "LILRB2 WILD-TYPE" "LILRB2 WILD-TYPE" "LILRB2 WILD-TYPE" 
      TCGA-35-4123       TCGA-35-5375       TCGA-38-4625       TCGA-38-4626 
"LILRB2 WILD-TYPE" "LILRB2 WILD-TYPE" "LILRB2 WILD-TYPE" "LILRB2 WILD-TYPE" 
      TCGA-38-4627       TCGA-38-4628       TCGA-38-4629       TCGA-38-4630 
"LILRB2 WILD-TYPE" "LILRB2 WILD-TYPE" "LILRB2 WILD-TYPE" "LILRB2 WILD-TYPE" 
      TCGA-38-4631       TCGA-38-4632       TCGA-38-6178       TCGA-44-2655 
"LILRB2 WILD-TYPE" "LILRB2 WILD-TYPE" "LILRB2 WILD-TYPE" "LILRB2 WILD-TYPE" 
      TCGA-44-2656       TCGA-44-2657       TCGA-44-2659       TCGA-44-2661 
"LILRB2 WILD-TYPE" "LILRB2 WILD-TYPE" "LILRB2 WILD-TYPE" "LILRB2 WILD-TYPE" 
      TCGA-44-2662       TCGA-44-2665       TCGA-44-2666       TCGA-44-2668 
"LILRB2 WILD-TYPE" "LILRB2 WILD-TYPE" "LILRB2 WILD-TYPE" "LILRB2 WILD-TYPE" 
      TCGA-44-3396       TCGA-44-3398       TCGA-44-3918       TCGA-44-3919 
"LILRB2 WILD-TYPE" "LILRB2 WILD-TYPE" "LILRB2 WILD-TYPE" "LILRB2 WILD-TYPE" 
      TCGA-44-4112       TCGA-44-5643       TCGA-44-5645       TCGA-44-6144 
  "LILRB2 MUTATED" "LILRB2 WILD-TYPE" "LILRB2 WILD-TYPE" "LILRB2 WILD-TYPE" 
      TCGA-44-6145       TCGA-44-6146       TCGA-44-6147       TCGA-44-6148 
"LILRB2 WILD-TYPE" "LILRB2 WILD-TYPE" "LILRB2 WILD-TYPE" "LILRB2 WILD-TYPE" 
      TCGA-44-6774       TCGA-44-6775       TCGA-44-6776       TCGA-44-6777 
"LILRB2 WILD-TYPE" "LILRB2 WILD-TYPE" "LILRB2 WILD-TYPE" "LILRB2 WILD-TYPE" 
      TCGA-44-6778       TCGA-44-6779       TCGA-49-4486       TCGA-49-4487 
"LILRB2 WILD-TYPE" "LILRB2 WILD-TYPE" "LILRB2 WILD-TYPE" "LILRB2 WILD-TYPE" 
      TCGA-49-4488       TCGA-49-4490       TCGA-49-4494       TCGA-49-4501 
"LILRB2 WILD-TYPE" "LILRB2 WILD-TYPE" "LILRB2 WILD-TYPE" "LILRB2 WILD-TYPE" 
      TCGA-49-4505       TCGA-49-4506       TCGA-49-4507       TCGA-49-4510 
"LILRB2 WILD-TYPE" "LILRB2 WILD-TYPE" "LILRB2 WILD-TYPE" "LILRB2 WILD-TYPE" 
      TCGA-49-4512       TCGA-49-4514       TCGA-49-6742       TCGA-49-6743 
"LILRB2 WILD-TYPE" "LILRB2 WILD-TYPE" "LILRB2 WILD-TYPE" "LILRB2 WILD-TYPE" 
      TCGA-49-6744       TCGA-49-6745       TCGA-50-5044       TCGA-50-5045 
"LILRB2 WILD-TYPE" "LILRB2 WILD-TYPE" "LILRB2 WILD-TYPE" "LILRB2 WILD-TYPE" 
      TCGA-50-5049       TCGA-50-5051       TCGA-50-5055       TCGA-50-5066 
"LILRB2 WILD-TYPE" "LILRB2 WILD-TYPE" "LILRB2 WILD-TYPE"   "LILRB2 MUTATED" 
      TCGA-50-5068       TCGA-50-5072       TCGA-50-5930       TCGA-50-5931 
"LILRB2 WILD-TYPE" "LILRB2 WILD-TYPE" "LILRB2 WILD-TYPE" "LILRB2 WILD-TYPE" 
      TCGA-50-5932       TCGA-50-5933       TCGA-50-5935       TCGA-50-5936 
"LILRB2 WILD-TYPE" "LILRB2 WILD-TYPE" "LILRB2 WILD-TYPE" "LILRB2 WILD-TYPE" 
      TCGA-50-5939       TCGA-50-5941       TCGA-50-5942       TCGA-50-5944 
"LILRB2 WILD-TYPE" "LILRB2 WILD-TYPE" "LILRB2 WILD-TYPE" "LILRB2 WILD-TYPE" 
      TCGA-50-5946       TCGA-50-6590       TCGA-50-6591       TCGA-50-6592 
"LILRB2 WILD-TYPE" "LILRB2 WILD-TYPE" "LILRB2 WILD-TYPE" "LILRB2 WILD-TYPE" 
      TCGA-50-6593       TCGA-50-6594       TCGA-50-6595       TCGA-50-6597 
"LILRB2 WILD-TYPE" "LILRB2 WILD-TYPE" "LILRB2 WILD-TYPE" "LILRB2 WILD-TYPE" 
      TCGA-55-1592       TCGA-55-1594       TCGA-55-1595       TCGA-55-1596 
  "LILRB2 MUTATED" "LILRB2 WILD-TYPE" "LILRB2 WILD-TYPE" "LILRB2 WILD-TYPE" 
      TCGA-55-5899       TCGA-55-6543       TCGA-55-6642       TCGA-55-6712 
"LILRB2 WILD-TYPE" "LILRB2 WILD-TYPE" "LILRB2 WILD-TYPE" "LILRB2 WILD-TYPE" 
      TCGA-64-1676       TCGA-64-1677       TCGA-64-1678       TCGA-64-1680 
"LILRB2 WILD-TYPE" "LILRB2 WILD-TYPE" "LILRB2 WILD-TYPE" "LILRB2 WILD-TYPE" 
      TCGA-64-5774       TCGA-64-5775       TCGA-64-5778       TCGA-64-5779 
"LILRB2 WILD-TYPE" "LILRB2 WILD-TYPE" "LILRB2 WILD-TYPE" "LILRB2 WILD-TYPE" 
      TCGA-64-5781       TCGA-64-5815       TCGA-67-3770       TCGA-67-3771 
"LILRB2 WILD-TYPE"   "LILRB2 MUTATED" "LILRB2 WILD-TYPE" "LILRB2 WILD-TYPE" 
      TCGA-67-3772       TCGA-67-3773       TCGA-67-3774       TCGA-67-6215 
"LILRB2 WILD-TYPE" "LILRB2 WILD-TYPE" "LILRB2 WILD-TYPE" "LILRB2 WILD-TYPE" 
      TCGA-67-6216       TCGA-67-6217       TCGA-71-6725       TCGA-73-4658 
"LILRB2 WILD-TYPE" "LILRB2 WILD-TYPE" "LILRB2 WILD-TYPE" "LILRB2 WILD-TYPE" 
      TCGA-73-4659       TCGA-73-4662       TCGA-73-4666       TCGA-73-4668 
"LILRB2 WILD-TYPE"   "LILRB2 MUTATED" "LILRB2 WILD-TYPE" "LILRB2 WILD-TYPE" 
      TCGA-73-4670       TCGA-73-4675       TCGA-73-4676       TCGA-73-4677 
"LILRB2 WILD-TYPE" "LILRB2 WILD-TYPE" "LILRB2 WILD-TYPE" "LILRB2 WILD-TYPE" 
      TCGA-91-6828       TCGA-91-6829       TCGA-91-6831       TCGA-91-6835 
"LILRB2 WILD-TYPE" "LILRB2 WILD-TYPE" "LILRB2 WILD-TYPE" "LILRB2 WILD-TYPE" 
      TCGA-91-6836 
"LILRB2 WILD-TYPE" 
[1] "hr=" "2.5"
D239V2, continuous
D239V3, binary
[1] "tbl2"
                  cls
clus               [,1] [,2]
  LILRB2 MUTATED      5    4
  LILRB2 WILD-TYPE   88   75
        clus
vv       LILRB2 MUTATED LILRB2 WILD-TYPE
  FEMALE              5               88
  MALE                4               75
D239V4, continuous
[1] "Remove cluster labels:" "LILRB2 MUTATED"        
clus
  LILRB2 MUTATED LILRB2 WILD-TYPE 
               1               11 
      TCGA-35-4122       TCGA-35-4123       TCGA-35-5375       TCGA-64-1677 
"LILRB2 WILD-TYPE" "LILRB2 WILD-TYPE" "LILRB2 WILD-TYPE" "LILRB2 WILD-TYPE" 
      TCGA-64-5778       TCGA-71-6725       TCGA-73-4659       TCGA-73-4666 
"LILRB2 WILD-TYPE" "LILRB2 WILD-TYPE" "LILRB2 WILD-TYPE" "LILRB2 WILD-TYPE" 
      TCGA-73-4668       TCGA-73-4676       TCGA-75-5122 
"LILRB2 WILD-TYPE" "LILRB2 WILD-TYPE" "LILRB2 WILD-TYPE" 
D239V5, multiclass
D239V6, multiclass
    clus
vv   LILRB2 MUTATED LILRB2 WILD-TYPE
  T1              1               40
  T2              6              102
  T3              2               12
  T4              0                8
D239V7, multiclass
       clus
vv      LILRB2 MUTATED LILRB2 WILD-TYPE
  N0                 7               88
  N1                 1               36
  N2+N3              1               34
D239V8, multiclass
    clus
vv   LILRB2 MUTATED LILRB2 WILD-TYPE
  M0              8              129
  M1              0                9
  MX              1               21
D239V9, multiclass
     clus
vv    LILRB2 MUTATED LILRB2 WILD-TYPE
  I                6               82
  II               2               31
  III              1               38
  IV               0                9
D239V10, binary
[1] "tbl2"
                  cls
clus               [,1] [,2]
  LILRB2 MUTATED      1    8
  LILRB2 WILD-TYPE   15  148
     clus
vv    LILRB2 MUTATED LILRB2 WILD-TYPE
  NO               1               15
  YES              8              148
D239V11, continuous
D239V12, continuous
D239V13, multiclass
                                             clus
vv                                            LILRB2 MUTATED LILRB2 WILD-TYPE
  CURRENT REFORMED SMOKER FOR < OR = 15 YEARS              3               59
  CURRENT REFORMED SMOKER FOR > 15 YEARS                   4               42
  CURRENT SMOKER                                           1               27
  LIFELONG NON-SMOKER                                      1               23
D239V14, continuous

Clustering(240) Variable = MS4A12 MUTATION ANALYSIS
D240V1, survival
                  sevent
clus2               0  1
  MS4A12 MUTATED    2  2
  MS4A12 WILD-TYPE 97 48
  MS4A12 MUTATED MS4A12 WILD-TYPE 
               4              145 
  MS4A12 MUTATED MS4A12 WILD-TYPE 
               2               48 
$`MS4A12 MUTATED`
TCGA-05-4396 TCGA-05-4420 TCGA-73-4659 TCGA-73-4666 
        9.96        29.95        23.38        20.28 

$`MS4A12 WILD-TYPE`
TCGA-05-4249 TCGA-05-4250 TCGA-05-4382 TCGA-05-4384 TCGA-05-4390 TCGA-05-4397 
       38.07         3.98        19.92        14.01        37.02        24.03 
TCGA-05-4398 TCGA-05-4402 TCGA-05-4405 TCGA-05-4415 TCGA-05-4417 TCGA-05-4418 
       47.05         8.02        20.05         2.96        14.93         8.98 
TCGA-05-4424 TCGA-05-4426 TCGA-05-4427 TCGA-05-4430 TCGA-05-4432 TCGA-05-4433 
       30.02        26.01        26.01        25.02        25.02        24.00 
TCGA-05-4434 TCGA-05-5420 TCGA-05-5423 TCGA-05-5425 TCGA-05-5429 TCGA-05-5715 
       15.02         1.02         4.96         2.96         0.99         2.04 
TCGA-35-3615 TCGA-35-4122 TCGA-35-4123 TCGA-35-5375 TCGA-38-4625 TCGA-38-4626 
        0.46         7.36         5.95         8.68        47.61        85.32 
TCGA-38-4627 TCGA-38-4628 TCGA-38-4629 TCGA-38-4630 TCGA-38-4631 TCGA-38-4632 
       37.71        49.02        28.37        35.28        11.64        44.61 
TCGA-38-6178 TCGA-44-2655 TCGA-44-2656 TCGA-44-2657 TCGA-44-2659 TCGA-44-2661 
        5.19        18.87        19.10        13.15        17.39         3.39 
TCGA-44-2662 TCGA-44-2665 TCGA-44-2666 TCGA-44-2668 TCGA-44-3396 TCGA-44-3398 
       15.78        13.15         3.19         8.09        10.22         8.32 
TCGA-44-3918 TCGA-44-3919 TCGA-44-4112 TCGA-44-5643 TCGA-44-5645 TCGA-44-6144 
        6.44         6.21         4.60         3.48         6.84         0.30 
TCGA-44-6145 TCGA-44-6146 TCGA-44-6147 TCGA-44-6148 TCGA-44-6774 TCGA-44-6775 
        3.35         9.93         7.76         3.12         5.42         2.70 
TCGA-44-6776 TCGA-44-6777 TCGA-44-6778 TCGA-44-6779 TCGA-49-4486 TCGA-49-4487 
       63.72        32.45        36.49        16.41        76.21        28.11 
TCGA-49-4488 TCGA-49-4490 TCGA-49-4494 TCGA-49-4501 TCGA-49-4505 TCGA-49-4506 
       28.57        12.66        35.54        46.72        14.07        32.84 
TCGA-49-4507 TCGA-49-4510 TCGA-49-4512 TCGA-49-4514 TCGA-49-6742 TCGA-49-6743 
        8.81        29.46        29.75        43.20        15.02        12.13 
TCGA-49-6744 TCGA-49-6745 TCGA-50-5044 TCGA-50-5045 TCGA-50-5049 TCGA-50-5051 
       12.99         4.93        20.48        71.47        48.82        14.96 
TCGA-50-5055 TCGA-50-5066 TCGA-50-5068 TCGA-50-5072 TCGA-50-5930 TCGA-50-5931 
       25.81         9.76        49.28         8.05         9.27         8.78 
TCGA-50-5932 TCGA-50-5933 TCGA-50-5935 TCGA-50-5936 TCGA-50-5939 TCGA-50-5941 
       35.87        77.88        21.47         8.45        15.12         9.37 
TCGA-50-5942 TCGA-50-5944 TCGA-50-5946 TCGA-50-6590 TCGA-50-6591 TCGA-50-6592 
        4.44        12.26        11.47        42.31         3.88        25.51 
TCGA-50-6593 TCGA-50-6594 TCGA-50-6595 TCGA-50-6597 TCGA-55-1592 TCGA-55-1594 
       11.05        12.16         6.21        33.37        23.05        38.73 
TCGA-55-1595 TCGA-55-1596 TCGA-55-5899 TCGA-55-6543 TCGA-55-6642 TCGA-55-6712 
       48.62        45.17         2.86         0.07        32.61         0.79 
TCGA-64-1676 TCGA-64-1677 TCGA-64-1678 TCGA-64-1680 TCGA-64-5774 TCGA-64-5775 
       56.81        20.65        39.09        37.02        83.84         0.10 
TCGA-64-5778 TCGA-64-5779 TCGA-64-5781 TCGA-64-5815 TCGA-67-3770 TCGA-67-3771 
       30.44        16.67        39.52         7.33         0.99         1.97 
TCGA-67-3772 TCGA-67-3773 TCGA-67-3774 TCGA-67-6215 TCGA-67-6216 TCGA-67-6217 
        0.59         2.04         0.59         0.89         0.69        13.87 
TCGA-71-6725 TCGA-73-4658 TCGA-73-4662 TCGA-73-4668 TCGA-73-4670 TCGA-73-4675 
        2.01        52.57        29.95        15.35         0.46         1.32 
TCGA-73-4676 TCGA-73-4677 TCGA-91-6828 TCGA-91-6829 TCGA-91-6831 TCGA-91-6835 
        4.01         1.25         1.22        41.33         1.28         1.15 
TCGA-91-6836 
        0.36 

  MS4A12 MUTATED MS4A12 WILD-TYPE 
            9.96             0.07 
  MS4A12 MUTATED MS4A12 WILD-TYPE 
           29.95            85.32 
  MS4A12 MUTATED MS4A12 WILD-TYPE 
           21.83            13.15 
[1] "10.0 - 29.9 (21.8)" "0.1 - 85.3 (13.2)" 
      TCGA-05-4249       TCGA-05-4250       TCGA-05-4382       TCGA-05-4384 
"MS4A12 WILD-TYPE" "MS4A12 WILD-TYPE" "MS4A12 WILD-TYPE" "MS4A12 WILD-TYPE" 
      TCGA-05-4390       TCGA-05-4396       TCGA-05-4397       TCGA-05-4398 
"MS4A12 WILD-TYPE"   "MS4A12 MUTATED" "MS4A12 WILD-TYPE" "MS4A12 WILD-TYPE" 
      TCGA-05-4402       TCGA-05-4405       TCGA-05-4415       TCGA-05-4417 
"MS4A12 WILD-TYPE" "MS4A12 WILD-TYPE" "MS4A12 WILD-TYPE" "MS4A12 WILD-TYPE" 
      TCGA-05-4418       TCGA-05-4420       TCGA-05-4424       TCGA-05-4426 
"MS4A12 WILD-TYPE"   "MS4A12 MUTATED" "MS4A12 WILD-TYPE" "MS4A12 WILD-TYPE" 
      TCGA-05-4427       TCGA-05-4430       TCGA-05-4432       TCGA-05-4433 
"MS4A12 WILD-TYPE" "MS4A12 WILD-TYPE" "MS4A12 WILD-TYPE" "MS4A12 WILD-TYPE" 
      TCGA-05-4434       TCGA-05-5420       TCGA-05-5423       TCGA-05-5425 
"MS4A12 WILD-TYPE" "MS4A12 WILD-TYPE" "MS4A12 WILD-TYPE" "MS4A12 WILD-TYPE" 
      TCGA-05-5429       TCGA-05-5715       TCGA-35-3615       TCGA-35-4122 
"MS4A12 WILD-TYPE" "MS4A12 WILD-TYPE" "MS4A12 WILD-TYPE" "MS4A12 WILD-TYPE" 
      TCGA-35-4123       TCGA-35-5375       TCGA-38-4625       TCGA-38-4626 
"MS4A12 WILD-TYPE" "MS4A12 WILD-TYPE" "MS4A12 WILD-TYPE" "MS4A12 WILD-TYPE" 
      TCGA-38-4627       TCGA-38-4628       TCGA-38-4629       TCGA-38-4630 
"MS4A12 WILD-TYPE" "MS4A12 WILD-TYPE" "MS4A12 WILD-TYPE" "MS4A12 WILD-TYPE" 
      TCGA-38-4631       TCGA-38-4632       TCGA-38-6178       TCGA-44-2655 
"MS4A12 WILD-TYPE" "MS4A12 WILD-TYPE" "MS4A12 WILD-TYPE" "MS4A12 WILD-TYPE" 
      TCGA-44-2656       TCGA-44-2657       TCGA-44-2659       TCGA-44-2661 
"MS4A12 WILD-TYPE" "MS4A12 WILD-TYPE" "MS4A12 WILD-TYPE" "MS4A12 WILD-TYPE" 
      TCGA-44-2662       TCGA-44-2665       TCGA-44-2666       TCGA-44-2668 
"MS4A12 WILD-TYPE" "MS4A12 WILD-TYPE" "MS4A12 WILD-TYPE" "MS4A12 WILD-TYPE" 
      TCGA-44-3396       TCGA-44-3398       TCGA-44-3918       TCGA-44-3919 
"MS4A12 WILD-TYPE" "MS4A12 WILD-TYPE" "MS4A12 WILD-TYPE" "MS4A12 WILD-TYPE" 
      TCGA-44-4112       TCGA-44-5643       TCGA-44-5645       TCGA-44-6144 
"MS4A12 WILD-TYPE" "MS4A12 WILD-TYPE" "MS4A12 WILD-TYPE" "MS4A12 WILD-TYPE" 
      TCGA-44-6145       TCGA-44-6146       TCGA-44-6147       TCGA-44-6148 
"MS4A12 WILD-TYPE" "MS4A12 WILD-TYPE" "MS4A12 WILD-TYPE" "MS4A12 WILD-TYPE" 
      TCGA-44-6774       TCGA-44-6775       TCGA-44-6776       TCGA-44-6777 
"MS4A12 WILD-TYPE" "MS4A12 WILD-TYPE" "MS4A12 WILD-TYPE" "MS4A12 WILD-TYPE" 
      TCGA-44-6778       TCGA-44-6779       TCGA-49-4486       TCGA-49-4487 
"MS4A12 WILD-TYPE" "MS4A12 WILD-TYPE" "MS4A12 WILD-TYPE" "MS4A12 WILD-TYPE" 
      TCGA-49-4488       TCGA-49-4490       TCGA-49-4494       TCGA-49-4501 
"MS4A12 WILD-TYPE" "MS4A12 WILD-TYPE" "MS4A12 WILD-TYPE" "MS4A12 WILD-TYPE" 
      TCGA-49-4505       TCGA-49-4506       TCGA-49-4507       TCGA-49-4510 
"MS4A12 WILD-TYPE" "MS4A12 WILD-TYPE" "MS4A12 WILD-TYPE" "MS4A12 WILD-TYPE" 
      TCGA-49-4512       TCGA-49-4514       TCGA-49-6742       TCGA-49-6743 
"MS4A12 WILD-TYPE" "MS4A12 WILD-TYPE" "MS4A12 WILD-TYPE" "MS4A12 WILD-TYPE" 
      TCGA-49-6744       TCGA-49-6745       TCGA-50-5044       TCGA-50-5045 
"MS4A12 WILD-TYPE" "MS4A12 WILD-TYPE" "MS4A12 WILD-TYPE" "MS4A12 WILD-TYPE" 
      TCGA-50-5049       TCGA-50-5051       TCGA-50-5055       TCGA-50-5066 
"MS4A12 WILD-TYPE" "MS4A12 WILD-TYPE" "MS4A12 WILD-TYPE" "MS4A12 WILD-TYPE" 
      TCGA-50-5068       TCGA-50-5072       TCGA-50-5930       TCGA-50-5931 
"MS4A12 WILD-TYPE" "MS4A12 WILD-TYPE" "MS4A12 WILD-TYPE" "MS4A12 WILD-TYPE" 
      TCGA-50-5932       TCGA-50-5933       TCGA-50-5935       TCGA-50-5936 
"MS4A12 WILD-TYPE" "MS4A12 WILD-TYPE" "MS4A12 WILD-TYPE" "MS4A12 WILD-TYPE" 
      TCGA-50-5939       TCGA-50-5941       TCGA-50-5942       TCGA-50-5944 
"MS4A12 WILD-TYPE" "MS4A12 WILD-TYPE" "MS4A12 WILD-TYPE" "MS4A12 WILD-TYPE" 
      TCGA-50-5946       TCGA-50-6590       TCGA-50-6591       TCGA-50-6592 
"MS4A12 WILD-TYPE" "MS4A12 WILD-TYPE" "MS4A12 WILD-TYPE" "MS4A12 WILD-TYPE" 
      TCGA-50-6593       TCGA-50-6594       TCGA-50-6595       TCGA-50-6597 
"MS4A12 WILD-TYPE" "MS4A12 WILD-TYPE" "MS4A12 WILD-TYPE" "MS4A12 WILD-TYPE" 
      TCGA-55-1592       TCGA-55-1594       TCGA-55-1595       TCGA-55-1596 
"MS4A12 WILD-TYPE" "MS4A12 WILD-TYPE" "MS4A12 WILD-TYPE" "MS4A12 WILD-TYPE" 
      TCGA-55-5899       TCGA-55-6543       TCGA-55-6642       TCGA-55-6712 
"MS4A12 WILD-TYPE" "MS4A12 WILD-TYPE" "MS4A12 WILD-TYPE" "MS4A12 WILD-TYPE" 
      TCGA-64-1676       TCGA-64-1677       TCGA-64-1678       TCGA-64-1680 
"MS4A12 WILD-TYPE" "MS4A12 WILD-TYPE" "MS4A12 WILD-TYPE" "MS4A12 WILD-TYPE" 
      TCGA-64-5774       TCGA-64-5775       TCGA-64-5778       TCGA-64-5779 
"MS4A12 WILD-TYPE" "MS4A12 WILD-TYPE" "MS4A12 WILD-TYPE" "MS4A12 WILD-TYPE" 
      TCGA-64-5781       TCGA-64-5815       TCGA-67-3770       TCGA-67-3771 
"MS4A12 WILD-TYPE" "MS4A12 WILD-TYPE" "MS4A12 WILD-TYPE" "MS4A12 WILD-TYPE" 
      TCGA-67-3772       TCGA-67-3773       TCGA-67-3774       TCGA-67-6215 
"MS4A12 WILD-TYPE" "MS4A12 WILD-TYPE" "MS4A12 WILD-TYPE" "MS4A12 WILD-TYPE" 
      TCGA-67-6216       TCGA-67-6217       TCGA-71-6725       TCGA-73-4658 
"MS4A12 WILD-TYPE" "MS4A12 WILD-TYPE" "MS4A12 WILD-TYPE" "MS4A12 WILD-TYPE" 
      TCGA-73-4659       TCGA-73-4662       TCGA-73-4666       TCGA-73-4668 
  "MS4A12 MUTATED" "MS4A12 WILD-TYPE"   "MS4A12 MUTATED" "MS4A12 WILD-TYPE" 
      TCGA-73-4670       TCGA-73-4675       TCGA-73-4676       TCGA-73-4677 
"MS4A12 WILD-TYPE" "MS4A12 WILD-TYPE" "MS4A12 WILD-TYPE" "MS4A12 WILD-TYPE" 
      TCGA-91-6828       TCGA-91-6829       TCGA-91-6831       TCGA-91-6835 
"MS4A12 WILD-TYPE" "MS4A12 WILD-TYPE" "MS4A12 WILD-TYPE" "MS4A12 WILD-TYPE" 
      TCGA-91-6836 
"MS4A12 WILD-TYPE" 
      TCGA-05-4249       TCGA-05-4250       TCGA-05-4382       TCGA-05-4384 
"MS4A12 WILD-TYPE" "MS4A12 WILD-TYPE" "MS4A12 WILD-TYPE" "MS4A12 WILD-TYPE" 
      TCGA-05-4390       TCGA-05-4396       TCGA-05-4397       TCGA-05-4398 
"MS4A12 WILD-TYPE"   "MS4A12 MUTATED" "MS4A12 WILD-TYPE" "MS4A12 WILD-TYPE" 
      TCGA-05-4402       TCGA-05-4405       TCGA-05-4415       TCGA-05-4417 
"MS4A12 WILD-TYPE" "MS4A12 WILD-TYPE" "MS4A12 WILD-TYPE" "MS4A12 WILD-TYPE" 
      TCGA-05-4418       TCGA-05-4420       TCGA-05-4424       TCGA-05-4426 
"MS4A12 WILD-TYPE"   "MS4A12 MUTATED" "MS4A12 WILD-TYPE" "MS4A12 WILD-TYPE" 
      TCGA-05-4427       TCGA-05-4430       TCGA-05-4432       TCGA-05-4433 
"MS4A12 WILD-TYPE" "MS4A12 WILD-TYPE" "MS4A12 WILD-TYPE" "MS4A12 WILD-TYPE" 
      TCGA-05-4434       TCGA-05-5420       TCGA-05-5423       TCGA-05-5425 
"MS4A12 WILD-TYPE" "MS4A12 WILD-TYPE" "MS4A12 WILD-TYPE" "MS4A12 WILD-TYPE" 
      TCGA-05-5429       TCGA-05-5715       TCGA-35-3615       TCGA-35-4122 
"MS4A12 WILD-TYPE" "MS4A12 WILD-TYPE" "MS4A12 WILD-TYPE" "MS4A12 WILD-TYPE" 
      TCGA-35-4123       TCGA-35-5375       TCGA-38-4625       TCGA-38-4626 
"MS4A12 WILD-TYPE" "MS4A12 WILD-TYPE" "MS4A12 WILD-TYPE" "MS4A12 WILD-TYPE" 
      TCGA-38-4627       TCGA-38-4628       TCGA-38-4629       TCGA-38-4630 
"MS4A12 WILD-TYPE" "MS4A12 WILD-TYPE" "MS4A12 WILD-TYPE" "MS4A12 WILD-TYPE" 
      TCGA-38-4631       TCGA-38-4632       TCGA-38-6178       TCGA-44-2655 
"MS4A12 WILD-TYPE" "MS4A12 WILD-TYPE" "MS4A12 WILD-TYPE" "MS4A12 WILD-TYPE" 
      TCGA-44-2656       TCGA-44-2657       TCGA-44-2659       TCGA-44-2661 
"MS4A12 WILD-TYPE" "MS4A12 WILD-TYPE" "MS4A12 WILD-TYPE" "MS4A12 WILD-TYPE" 
      TCGA-44-2662       TCGA-44-2665       TCGA-44-2666       TCGA-44-2668 
"MS4A12 WILD-TYPE" "MS4A12 WILD-TYPE" "MS4A12 WILD-TYPE" "MS4A12 WILD-TYPE" 
      TCGA-44-3396       TCGA-44-3398       TCGA-44-3918       TCGA-44-3919 
"MS4A12 WILD-TYPE" "MS4A12 WILD-TYPE" "MS4A12 WILD-TYPE" "MS4A12 WILD-TYPE" 
      TCGA-44-4112       TCGA-44-5643       TCGA-44-5645       TCGA-44-6144 
"MS4A12 WILD-TYPE" "MS4A12 WILD-TYPE" "MS4A12 WILD-TYPE" "MS4A12 WILD-TYPE" 
      TCGA-44-6145       TCGA-44-6146       TCGA-44-6147       TCGA-44-6148 
"MS4A12 WILD-TYPE" "MS4A12 WILD-TYPE" "MS4A12 WILD-TYPE" "MS4A12 WILD-TYPE" 
      TCGA-44-6774       TCGA-44-6775       TCGA-44-6776       TCGA-44-6777 
"MS4A12 WILD-TYPE" "MS4A12 WILD-TYPE" "MS4A12 WILD-TYPE" "MS4A12 WILD-TYPE" 
      TCGA-44-6778       TCGA-44-6779       TCGA-49-4486       TCGA-49-4487 
"MS4A12 WILD-TYPE" "MS4A12 WILD-TYPE" "MS4A12 WILD-TYPE" "MS4A12 WILD-TYPE" 
      TCGA-49-4488       TCGA-49-4490       TCGA-49-4494       TCGA-49-4501 
"MS4A12 WILD-TYPE" "MS4A12 WILD-TYPE" "MS4A12 WILD-TYPE" "MS4A12 WILD-TYPE" 
      TCGA-49-4505       TCGA-49-4506       TCGA-49-4507       TCGA-49-4510 
"MS4A12 WILD-TYPE" "MS4A12 WILD-TYPE" "MS4A12 WILD-TYPE" "MS4A12 WILD-TYPE" 
      TCGA-49-4512       TCGA-49-4514       TCGA-49-6742       TCGA-49-6743 
"MS4A12 WILD-TYPE" "MS4A12 WILD-TYPE" "MS4A12 WILD-TYPE" "MS4A12 WILD-TYPE" 
      TCGA-49-6744       TCGA-49-6745       TCGA-50-5044       TCGA-50-5045 
"MS4A12 WILD-TYPE" "MS4A12 WILD-TYPE" "MS4A12 WILD-TYPE" "MS4A12 WILD-TYPE" 
      TCGA-50-5049       TCGA-50-5051       TCGA-50-5055       TCGA-50-5066 
"MS4A12 WILD-TYPE" "MS4A12 WILD-TYPE" "MS4A12 WILD-TYPE" "MS4A12 WILD-TYPE" 
      TCGA-50-5068       TCGA-50-5072       TCGA-50-5930       TCGA-50-5931 
"MS4A12 WILD-TYPE" "MS4A12 WILD-TYPE" "MS4A12 WILD-TYPE" "MS4A12 WILD-TYPE" 
      TCGA-50-5932       TCGA-50-5933       TCGA-50-5935       TCGA-50-5936 
"MS4A12 WILD-TYPE" "MS4A12 WILD-TYPE" "MS4A12 WILD-TYPE" "MS4A12 WILD-TYPE" 
      TCGA-50-5939       TCGA-50-5941       TCGA-50-5942       TCGA-50-5944 
"MS4A12 WILD-TYPE" "MS4A12 WILD-TYPE" "MS4A12 WILD-TYPE" "MS4A12 WILD-TYPE" 
      TCGA-50-5946       TCGA-50-6590       TCGA-50-6591       TCGA-50-6592 
"MS4A12 WILD-TYPE" "MS4A12 WILD-TYPE" "MS4A12 WILD-TYPE" "MS4A12 WILD-TYPE" 
      TCGA-50-6593       TCGA-50-6594       TCGA-50-6595       TCGA-50-6597 
"MS4A12 WILD-TYPE" "MS4A12 WILD-TYPE" "MS4A12 WILD-TYPE" "MS4A12 WILD-TYPE" 
      TCGA-55-1592       TCGA-55-1594       TCGA-55-1595       TCGA-55-1596 
"MS4A12 WILD-TYPE" "MS4A12 WILD-TYPE" "MS4A12 WILD-TYPE" "MS4A12 WILD-TYPE" 
      TCGA-55-5899       TCGA-55-6543       TCGA-55-6642       TCGA-55-6712 
"MS4A12 WILD-TYPE" "MS4A12 WILD-TYPE" "MS4A12 WILD-TYPE" "MS4A12 WILD-TYPE" 
      TCGA-64-1676       TCGA-64-1677       TCGA-64-1678       TCGA-64-1680 
"MS4A12 WILD-TYPE" "MS4A12 WILD-TYPE" "MS4A12 WILD-TYPE" "MS4A12 WILD-TYPE" 
      TCGA-64-5774       TCGA-64-5775       TCGA-64-5778       TCGA-64-5779 
"MS4A12 WILD-TYPE" "MS4A12 WILD-TYPE" "MS4A12 WILD-TYPE" "MS4A12 WILD-TYPE" 
      TCGA-64-5781       TCGA-64-5815       TCGA-67-3770       TCGA-67-3771 
"MS4A12 WILD-TYPE" "MS4A12 WILD-TYPE" "MS4A12 WILD-TYPE" "MS4A12 WILD-TYPE" 
      TCGA-67-3772       TCGA-67-3773       TCGA-67-3774       TCGA-67-6215 
"MS4A12 WILD-TYPE" "MS4A12 WILD-TYPE" "MS4A12 WILD-TYPE" "MS4A12 WILD-TYPE" 
      TCGA-67-6216       TCGA-67-6217       TCGA-71-6725       TCGA-73-4658 
"MS4A12 WILD-TYPE" "MS4A12 WILD-TYPE" "MS4A12 WILD-TYPE" "MS4A12 WILD-TYPE" 
      TCGA-73-4659       TCGA-73-4662       TCGA-73-4666       TCGA-73-4668 
  "MS4A12 MUTATED" "MS4A12 WILD-TYPE"   "MS4A12 MUTATED" "MS4A12 WILD-TYPE" 
      TCGA-73-4670       TCGA-73-4675       TCGA-73-4676       TCGA-73-4677 
"MS4A12 WILD-TYPE" "MS4A12 WILD-TYPE" "MS4A12 WILD-TYPE" "MS4A12 WILD-TYPE" 
      TCGA-91-6828       TCGA-91-6829       TCGA-91-6831       TCGA-91-6835 
"MS4A12 WILD-TYPE" "MS4A12 WILD-TYPE" "MS4A12 WILD-TYPE" "MS4A12 WILD-TYPE" 
      TCGA-91-6836 
"MS4A12 WILD-TYPE" 
      TCGA-05-4249       TCGA-05-4250       TCGA-05-4382       TCGA-05-4384 
"MS4A12 WILD-TYPE" "MS4A12 WILD-TYPE" "MS4A12 WILD-TYPE" "MS4A12 WILD-TYPE" 
      TCGA-05-4390       TCGA-05-4396       TCGA-05-4397       TCGA-05-4398 
"MS4A12 WILD-TYPE"   "MS4A12 MUTATED" "MS4A12 WILD-TYPE" "MS4A12 WILD-TYPE" 
      TCGA-05-4402       TCGA-05-4405       TCGA-05-4415       TCGA-05-4417 
"MS4A12 WILD-TYPE" "MS4A12 WILD-TYPE" "MS4A12 WILD-TYPE" "MS4A12 WILD-TYPE" 
      TCGA-05-4418       TCGA-05-4420       TCGA-05-4424       TCGA-05-4426 
"MS4A12 WILD-TYPE"   "MS4A12 MUTATED" "MS4A12 WILD-TYPE" "MS4A12 WILD-TYPE" 
      TCGA-05-4427       TCGA-05-4430       TCGA-05-4432       TCGA-05-4433 
"MS4A12 WILD-TYPE" "MS4A12 WILD-TYPE" "MS4A12 WILD-TYPE" "MS4A12 WILD-TYPE" 
      TCGA-05-4434       TCGA-05-5420       TCGA-05-5423       TCGA-05-5425 
"MS4A12 WILD-TYPE" "MS4A12 WILD-TYPE" "MS4A12 WILD-TYPE" "MS4A12 WILD-TYPE" 
      TCGA-05-5429       TCGA-05-5715       TCGA-35-3615       TCGA-35-4122 
"MS4A12 WILD-TYPE" "MS4A12 WILD-TYPE" "MS4A12 WILD-TYPE" "MS4A12 WILD-TYPE" 
      TCGA-35-4123       TCGA-35-5375       TCGA-38-4625       TCGA-38-4626 
"MS4A12 WILD-TYPE" "MS4A12 WILD-TYPE" "MS4A12 WILD-TYPE" "MS4A12 WILD-TYPE" 
      TCGA-38-4627       TCGA-38-4628       TCGA-38-4629       TCGA-38-4630 
"MS4A12 WILD-TYPE" "MS4A12 WILD-TYPE" "MS4A12 WILD-TYPE" "MS4A12 WILD-TYPE" 
      TCGA-38-4631       TCGA-38-4632       TCGA-38-6178       TCGA-44-2655 
"MS4A12 WILD-TYPE" "MS4A12 WILD-TYPE" "MS4A12 WILD-TYPE" "MS4A12 WILD-TYPE" 
      TCGA-44-2656       TCGA-44-2657       TCGA-44-2659       TCGA-44-2661 
"MS4A12 WILD-TYPE" "MS4A12 WILD-TYPE" "MS4A12 WILD-TYPE" "MS4A12 WILD-TYPE" 
      TCGA-44-2662       TCGA-44-2665       TCGA-44-2666       TCGA-44-2668 
"MS4A12 WILD-TYPE" "MS4A12 WILD-TYPE" "MS4A12 WILD-TYPE" "MS4A12 WILD-TYPE" 
      TCGA-44-3396       TCGA-44-3398       TCGA-44-3918       TCGA-44-3919 
"MS4A12 WILD-TYPE" "MS4A12 WILD-TYPE" "MS4A12 WILD-TYPE" "MS4A12 WILD-TYPE" 
      TCGA-44-4112       TCGA-44-5643       TCGA-44-5645       TCGA-44-6144 
"MS4A12 WILD-TYPE" "MS4A12 WILD-TYPE" "MS4A12 WILD-TYPE" "MS4A12 WILD-TYPE" 
      TCGA-44-6145       TCGA-44-6146       TCGA-44-6147       TCGA-44-6148 
"MS4A12 WILD-TYPE" "MS4A12 WILD-TYPE" "MS4A12 WILD-TYPE" "MS4A12 WILD-TYPE" 
      TCGA-44-6774       TCGA-44-6775       TCGA-44-6776       TCGA-44-6777 
"MS4A12 WILD-TYPE" "MS4A12 WILD-TYPE" "MS4A12 WILD-TYPE" "MS4A12 WILD-TYPE" 
      TCGA-44-6778       TCGA-44-6779       TCGA-49-4486       TCGA-49-4487 
"MS4A12 WILD-TYPE" "MS4A12 WILD-TYPE" "MS4A12 WILD-TYPE" "MS4A12 WILD-TYPE" 
      TCGA-49-4488       TCGA-49-4490       TCGA-49-4494       TCGA-49-4501 
"MS4A12 WILD-TYPE" "MS4A12 WILD-TYPE" "MS4A12 WILD-TYPE" "MS4A12 WILD-TYPE" 
      TCGA-49-4505       TCGA-49-4506       TCGA-49-4507       TCGA-49-4510 
"MS4A12 WILD-TYPE" "MS4A12 WILD-TYPE" "MS4A12 WILD-TYPE" "MS4A12 WILD-TYPE" 
      TCGA-49-4512       TCGA-49-4514       TCGA-49-6742       TCGA-49-6743 
"MS4A12 WILD-TYPE" "MS4A12 WILD-TYPE" "MS4A12 WILD-TYPE" "MS4A12 WILD-TYPE" 
      TCGA-49-6744       TCGA-49-6745       TCGA-50-5044       TCGA-50-5045 
"MS4A12 WILD-TYPE" "MS4A12 WILD-TYPE" "MS4A12 WILD-TYPE" "MS4A12 WILD-TYPE" 
      TCGA-50-5049       TCGA-50-5051       TCGA-50-5055       TCGA-50-5066 
"MS4A12 WILD-TYPE" "MS4A12 WILD-TYPE" "MS4A12 WILD-TYPE" "MS4A12 WILD-TYPE" 
      TCGA-50-5068       TCGA-50-5072       TCGA-50-5930       TCGA-50-5931 
"MS4A12 WILD-TYPE" "MS4A12 WILD-TYPE" "MS4A12 WILD-TYPE" "MS4A12 WILD-TYPE" 
      TCGA-50-5932       TCGA-50-5933       TCGA-50-5935       TCGA-50-5936 
"MS4A12 WILD-TYPE" "MS4A12 WILD-TYPE" "MS4A12 WILD-TYPE" "MS4A12 WILD-TYPE" 
      TCGA-50-5939       TCGA-50-5941       TCGA-50-5942       TCGA-50-5944 
"MS4A12 WILD-TYPE" "MS4A12 WILD-TYPE" "MS4A12 WILD-TYPE" "MS4A12 WILD-TYPE" 
      TCGA-50-5946       TCGA-50-6590       TCGA-50-6591       TCGA-50-6592 
"MS4A12 WILD-TYPE" "MS4A12 WILD-TYPE" "MS4A12 WILD-TYPE" "MS4A12 WILD-TYPE" 
      TCGA-50-6593       TCGA-50-6594       TCGA-50-6595       TCGA-50-6597 
"MS4A12 WILD-TYPE" "MS4A12 WILD-TYPE" "MS4A12 WILD-TYPE" "MS4A12 WILD-TYPE" 
      TCGA-55-1592       TCGA-55-1594       TCGA-55-1595       TCGA-55-1596 
"MS4A12 WILD-TYPE" "MS4A12 WILD-TYPE" "MS4A12 WILD-TYPE" "MS4A12 WILD-TYPE" 
      TCGA-55-5899       TCGA-55-6543       TCGA-55-6642       TCGA-55-6712 
"MS4A12 WILD-TYPE" "MS4A12 WILD-TYPE" "MS4A12 WILD-TYPE" "MS4A12 WILD-TYPE" 
      TCGA-64-1676       TCGA-64-1677       TCGA-64-1678       TCGA-64-1680 
"MS4A12 WILD-TYPE" "MS4A12 WILD-TYPE" "MS4A12 WILD-TYPE" "MS4A12 WILD-TYPE" 
      TCGA-64-5774       TCGA-64-5775       TCGA-64-5778       TCGA-64-5779 
"MS4A12 WILD-TYPE" "MS4A12 WILD-TYPE" "MS4A12 WILD-TYPE" "MS4A12 WILD-TYPE" 
      TCGA-64-5781       TCGA-64-5815       TCGA-67-3770       TCGA-67-3771 
"MS4A12 WILD-TYPE" "MS4A12 WILD-TYPE" "MS4A12 WILD-TYPE" "MS4A12 WILD-TYPE" 
      TCGA-67-3772       TCGA-67-3773       TCGA-67-3774       TCGA-67-6215 
"MS4A12 WILD-TYPE" "MS4A12 WILD-TYPE" "MS4A12 WILD-TYPE" "MS4A12 WILD-TYPE" 
      TCGA-67-6216       TCGA-67-6217       TCGA-71-6725       TCGA-73-4658 
"MS4A12 WILD-TYPE" "MS4A12 WILD-TYPE" "MS4A12 WILD-TYPE" "MS4A12 WILD-TYPE" 
      TCGA-73-4659       TCGA-73-4662       TCGA-73-4666       TCGA-73-4668 
  "MS4A12 MUTATED" "MS4A12 WILD-TYPE"   "MS4A12 MUTATED" "MS4A12 WILD-TYPE" 
      TCGA-73-4670       TCGA-73-4675       TCGA-73-4676       TCGA-73-4677 
"MS4A12 WILD-TYPE" "MS4A12 WILD-TYPE" "MS4A12 WILD-TYPE" "MS4A12 WILD-TYPE" 
      TCGA-91-6828       TCGA-91-6829       TCGA-91-6831       TCGA-91-6835 
"MS4A12 WILD-TYPE" "MS4A12 WILD-TYPE" "MS4A12 WILD-TYPE" "MS4A12 WILD-TYPE" 
      TCGA-91-6836 
"MS4A12 WILD-TYPE" 
[1] "hr=" "1.7"
D240V2, continuous
D240V3, binary
[1] "tbl2"
                  cls
clus               [,1] [,2]
  MS4A12 MUTATED      1    4
  MS4A12 WILD-TYPE   92   75
        clus
vv       MS4A12 MUTATED MS4A12 WILD-TYPE
  FEMALE              1               92
  MALE                4               75
D240V4, continuous
[1] "Remove cluster labels:" "MS4A12 MUTATED"        
clus
  MS4A12 MUTATED MS4A12 WILD-TYPE 
               2               10 
      TCGA-35-4122       TCGA-35-4123       TCGA-35-5375       TCGA-64-1677 
"MS4A12 WILD-TYPE" "MS4A12 WILD-TYPE" "MS4A12 WILD-TYPE" "MS4A12 WILD-TYPE" 
      TCGA-64-5778       TCGA-71-6725       TCGA-73-4662       TCGA-73-4668 
"MS4A12 WILD-TYPE" "MS4A12 WILD-TYPE" "MS4A12 WILD-TYPE" "MS4A12 WILD-TYPE" 
      TCGA-73-4676       TCGA-75-5122 
"MS4A12 WILD-TYPE" "MS4A12 WILD-TYPE" 
D240V5, multiclass
D240V6, multiclass
    clus
vv   MS4A12 MUTATED MS4A12 WILD-TYPE
  T1              2               39
  T2              2              106
  T3              0               14
  T4              1                7
D240V7, multiclass
       clus
vv      MS4A12 MUTATED MS4A12 WILD-TYPE
  N0                 2               93
  N1                 2               35
  N2+N3              1               34
D240V8, multiclass
    clus
vv   MS4A12 MUTATED MS4A12 WILD-TYPE
  M0              4              133
  M1              1                8
  MX              0               22
D240V9, multiclass
     clus
vv    MS4A12 MUTATED MS4A12 WILD-TYPE
  I                1               87
  II               1               32
  III              2               37
  IV               1                8
D240V10, binary
[1] "tbl2"
                  cls
clus               [,1] [,2]
  MS4A12 MUTATED      1    4
  MS4A12 WILD-TYPE   15  152
     clus
vv    MS4A12 MUTATED MS4A12 WILD-TYPE
  NO               1               15
  YES              4              152
D240V11, continuous
D240V12, continuous
D240V13, multiclass
                                             clus
vv                                            MS4A12 MUTATED MS4A12 WILD-TYPE
  CURRENT REFORMED SMOKER FOR < OR = 15 YEARS              1               61
  CURRENT REFORMED SMOKER FOR > 15 YEARS                   3               43
  CURRENT SMOKER                                           1               27
  LIFELONG NON-SMOKER                                      0               24
D240V14, continuous

Clustering(241) Variable = DTNA MUTATION ANALYSIS
D241V1, survival
                sevent
clus2             0  1
  DTNA MUTATED    7  3
  DTNA WILD-TYPE 92 47
  DTNA MUTATED DTNA WILD-TYPE 
            10            139 
  DTNA MUTATED DTNA WILD-TYPE 
             3             47 
$`DTNA MUTATED`
TCGA-05-4382 TCGA-05-4396 TCGA-05-4397 TCGA-35-5375 TCGA-38-4625 TCGA-38-4631 
       19.92         9.96        24.03         8.68        47.61        11.64 
TCGA-44-6776 TCGA-50-5049 TCGA-50-5942 TCGA-67-3771 
       63.72        48.82         4.44         1.97 

$`DTNA WILD-TYPE`
TCGA-05-4249 TCGA-05-4250 TCGA-05-4384 TCGA-05-4390 TCGA-05-4398 TCGA-05-4402 
       38.07         3.98        14.01        37.02        47.05         8.02 
TCGA-05-4405 TCGA-05-4415 TCGA-05-4417 TCGA-05-4418 TCGA-05-4420 TCGA-05-4424 
       20.05         2.96        14.93         8.98        29.95        30.02 
TCGA-05-4426 TCGA-05-4427 TCGA-05-4430 TCGA-05-4432 TCGA-05-4433 TCGA-05-4434 
       26.01        26.01        25.02        25.02        24.00        15.02 
TCGA-05-5420 TCGA-05-5423 TCGA-05-5425 TCGA-05-5429 TCGA-05-5715 TCGA-35-3615 
        1.02         4.96         2.96         0.99         2.04         0.46 
TCGA-35-4122 TCGA-35-4123 TCGA-38-4626 TCGA-38-4627 TCGA-38-4628 TCGA-38-4629 
        7.36         5.95        85.32        37.71        49.02        28.37 
TCGA-38-4630 TCGA-38-4632 TCGA-38-6178 TCGA-44-2655 TCGA-44-2656 TCGA-44-2657 
       35.28        44.61         5.19        18.87        19.10        13.15 
TCGA-44-2659 TCGA-44-2661 TCGA-44-2662 TCGA-44-2665 TCGA-44-2666 TCGA-44-2668 
       17.39         3.39        15.78        13.15         3.19         8.09 
TCGA-44-3396 TCGA-44-3398 TCGA-44-3918 TCGA-44-3919 TCGA-44-4112 TCGA-44-5643 
       10.22         8.32         6.44         6.21         4.60         3.48 
TCGA-44-5645 TCGA-44-6144 TCGA-44-6145 TCGA-44-6146 TCGA-44-6147 TCGA-44-6148 
        6.84         0.30         3.35         9.93         7.76         3.12 
TCGA-44-6774 TCGA-44-6775 TCGA-44-6777 TCGA-44-6778 TCGA-44-6779 TCGA-49-4486 
        5.42         2.70        32.45        36.49        16.41        76.21 
TCGA-49-4487 TCGA-49-4488 TCGA-49-4490 TCGA-49-4494 TCGA-49-4501 TCGA-49-4505 
       28.11        28.57        12.66        35.54        46.72        14.07 
TCGA-49-4506 TCGA-49-4507 TCGA-49-4510 TCGA-49-4512 TCGA-49-4514 TCGA-49-6742 
       32.84         8.81        29.46        29.75        43.20        15.02 
TCGA-49-6743 TCGA-49-6744 TCGA-49-6745 TCGA-50-5044 TCGA-50-5045 TCGA-50-5051 
       12.13        12.99         4.93        20.48        71.47        14.96 
TCGA-50-5055 TCGA-50-5066 TCGA-50-5068 TCGA-50-5072 TCGA-50-5930 TCGA-50-5931 
       25.81         9.76        49.28         8.05         9.27         8.78 
TCGA-50-5932 TCGA-50-5933 TCGA-50-5935 TCGA-50-5936 TCGA-50-5939 TCGA-50-5941 
       35.87        77.88        21.47         8.45        15.12         9.37 
TCGA-50-5944 TCGA-50-5946 TCGA-50-6590 TCGA-50-6591 TCGA-50-6592 TCGA-50-6593 
       12.26        11.47        42.31         3.88        25.51        11.05 
TCGA-50-6594 TCGA-50-6595 TCGA-50-6597 TCGA-55-1592 TCGA-55-1594 TCGA-55-1595 
       12.16         6.21        33.37        23.05        38.73        48.62 
TCGA-55-1596 TCGA-55-5899 TCGA-55-6543 TCGA-55-6642 TCGA-55-6712 TCGA-64-1676 
       45.17         2.86         0.07        32.61         0.79        56.81 
TCGA-64-1677 TCGA-64-1678 TCGA-64-1680 TCGA-64-5774 TCGA-64-5775 TCGA-64-5778 
       20.65        39.09        37.02        83.84         0.10        30.44 
TCGA-64-5779 TCGA-64-5781 TCGA-64-5815 TCGA-67-3770 TCGA-67-3772 TCGA-67-3773 
       16.67        39.52         7.33         0.99         0.59         2.04 
TCGA-67-3774 TCGA-67-6215 TCGA-67-6216 TCGA-67-6217 TCGA-71-6725 TCGA-73-4658 
        0.59         0.89         0.69        13.87         2.01        52.57 
TCGA-73-4659 TCGA-73-4662 TCGA-73-4666 TCGA-73-4668 TCGA-73-4670 TCGA-73-4675 
       23.38        29.95        20.28        15.35         0.46         1.32 
TCGA-73-4676 TCGA-73-4677 TCGA-91-6828 TCGA-91-6829 TCGA-91-6831 TCGA-91-6835 
        4.01         1.25         1.22        41.33         1.28         1.15 
TCGA-91-6836 
        0.36 

  DTNA MUTATED DTNA WILD-TYPE 
          1.97           0.07 
  DTNA MUTATED DTNA WILD-TYPE 
         63.72          85.32 
  DTNA MUTATED DTNA WILD-TYPE 
         15.78          13.87 
[1] "2.0 - 63.7 (15.8)" "0.1 - 85.3 (13.9)"
    TCGA-05-4249     TCGA-05-4250     TCGA-05-4382     TCGA-05-4384 
"DTNA WILD-TYPE" "DTNA WILD-TYPE"   "DTNA MUTATED" "DTNA WILD-TYPE" 
    TCGA-05-4390     TCGA-05-4396     TCGA-05-4397     TCGA-05-4398 
"DTNA WILD-TYPE"   "DTNA MUTATED"   "DTNA MUTATED" "DTNA WILD-TYPE" 
    TCGA-05-4402     TCGA-05-4405     TCGA-05-4415     TCGA-05-4417 
"DTNA WILD-TYPE" "DTNA WILD-TYPE" "DTNA WILD-TYPE" "DTNA WILD-TYPE" 
    TCGA-05-4418     TCGA-05-4420     TCGA-05-4424     TCGA-05-4426 
"DTNA WILD-TYPE" "DTNA WILD-TYPE" "DTNA WILD-TYPE" "DTNA WILD-TYPE" 
    TCGA-05-4427     TCGA-05-4430     TCGA-05-4432     TCGA-05-4433 
"DTNA WILD-TYPE" "DTNA WILD-TYPE" "DTNA WILD-TYPE" "DTNA WILD-TYPE" 
    TCGA-05-4434     TCGA-05-5420     TCGA-05-5423     TCGA-05-5425 
"DTNA WILD-TYPE" "DTNA WILD-TYPE" "DTNA WILD-TYPE" "DTNA WILD-TYPE" 
    TCGA-05-5429     TCGA-05-5715     TCGA-35-3615     TCGA-35-4122 
"DTNA WILD-TYPE" "DTNA WILD-TYPE" "DTNA WILD-TYPE" "DTNA WILD-TYPE" 
    TCGA-35-4123     TCGA-35-5375     TCGA-38-4625     TCGA-38-4626 
"DTNA WILD-TYPE"   "DTNA MUTATED"   "DTNA MUTATED" "DTNA WILD-TYPE" 
    TCGA-38-4627     TCGA-38-4628     TCGA-38-4629     TCGA-38-4630 
"DTNA WILD-TYPE" "DTNA WILD-TYPE" "DTNA WILD-TYPE" "DTNA WILD-TYPE" 
    TCGA-38-4631     TCGA-38-4632     TCGA-38-6178     TCGA-44-2655 
  "DTNA MUTATED" "DTNA WILD-TYPE" "DTNA WILD-TYPE" "DTNA WILD-TYPE" 
    TCGA-44-2656     TCGA-44-2657     TCGA-44-2659     TCGA-44-2661 
"DTNA WILD-TYPE" "DTNA WILD-TYPE" "DTNA WILD-TYPE" "DTNA WILD-TYPE" 
    TCGA-44-2662     TCGA-44-2665     TCGA-44-2666     TCGA-44-2668 
"DTNA WILD-TYPE" "DTNA WILD-TYPE" "DTNA WILD-TYPE" "DTNA WILD-TYPE" 
    TCGA-44-3396     TCGA-44-3398     TCGA-44-3918     TCGA-44-3919 
"DTNA WILD-TYPE" "DTNA WILD-TYPE" "DTNA WILD-TYPE" "DTNA WILD-TYPE" 
    TCGA-44-4112     TCGA-44-5643     TCGA-44-5645     TCGA-44-6144 
"DTNA WILD-TYPE" "DTNA WILD-TYPE" "DTNA WILD-TYPE" "DTNA WILD-TYPE" 
    TCGA-44-6145     TCGA-44-6146     TCGA-44-6147     TCGA-44-6148 
"DTNA WILD-TYPE" "DTNA WILD-TYPE" "DTNA WILD-TYPE" "DTNA WILD-TYPE" 
    TCGA-44-6774     TCGA-44-6775     TCGA-44-6776     TCGA-44-6777 
"DTNA WILD-TYPE" "DTNA WILD-TYPE"   "DTNA MUTATED" "DTNA WILD-TYPE" 
    TCGA-44-6778     TCGA-44-6779     TCGA-49-4486     TCGA-49-4487 
"DTNA WILD-TYPE" "DTNA WILD-TYPE" "DTNA WILD-TYPE" "DTNA WILD-TYPE" 
    TCGA-49-4488     TCGA-49-4490     TCGA-49-4494     TCGA-49-4501 
"DTNA WILD-TYPE" "DTNA WILD-TYPE" "DTNA WILD-TYPE" "DTNA WILD-TYPE" 
    TCGA-49-4505     TCGA-49-4506     TCGA-49-4507     TCGA-49-4510 
"DTNA WILD-TYPE" "DTNA WILD-TYPE" "DTNA WILD-TYPE" "DTNA WILD-TYPE" 
    TCGA-49-4512     TCGA-49-4514     TCGA-49-6742     TCGA-49-6743 
"DTNA WILD-TYPE" "DTNA WILD-TYPE" "DTNA WILD-TYPE" "DTNA WILD-TYPE" 
    TCGA-49-6744     TCGA-49-6745     TCGA-50-5044     TCGA-50-5045 
"DTNA WILD-TYPE" "DTNA WILD-TYPE" "DTNA WILD-TYPE" "DTNA WILD-TYPE" 
    TCGA-50-5049     TCGA-50-5051     TCGA-50-5055     TCGA-50-5066 
  "DTNA MUTATED" "DTNA WILD-TYPE" "DTNA WILD-TYPE" "DTNA WILD-TYPE" 
    TCGA-50-5068     TCGA-50-5072     TCGA-50-5930     TCGA-50-5931 
"DTNA WILD-TYPE" "DTNA WILD-TYPE" "DTNA WILD-TYPE" "DTNA WILD-TYPE" 
    TCGA-50-5932     TCGA-50-5933     TCGA-50-5935     TCGA-50-5936 
"DTNA WILD-TYPE" "DTNA WILD-TYPE" "DTNA WILD-TYPE" "DTNA WILD-TYPE" 
    TCGA-50-5939     TCGA-50-5941     TCGA-50-5942     TCGA-50-5944 
"DTNA WILD-TYPE" "DTNA WILD-TYPE"   "DTNA MUTATED" "DTNA WILD-TYPE" 
    TCGA-50-5946     TCGA-50-6590     TCGA-50-6591     TCGA-50-6592 
"DTNA WILD-TYPE" "DTNA WILD-TYPE" "DTNA WILD-TYPE" "DTNA WILD-TYPE" 
    TCGA-50-6593     TCGA-50-6594     TCGA-50-6595     TCGA-50-6597 
"DTNA WILD-TYPE" "DTNA WILD-TYPE" "DTNA WILD-TYPE" "DTNA WILD-TYPE" 
    TCGA-55-1592     TCGA-55-1594     TCGA-55-1595     TCGA-55-1596 
"DTNA WILD-TYPE" "DTNA WILD-TYPE" "DTNA WILD-TYPE" "DTNA WILD-TYPE" 
    TCGA-55-5899     TCGA-55-6543     TCGA-55-6642     TCGA-55-6712 
"DTNA WILD-TYPE" "DTNA WILD-TYPE" "DTNA WILD-TYPE" "DTNA WILD-TYPE" 
    TCGA-64-1676     TCGA-64-1677     TCGA-64-1678     TCGA-64-1680 
"DTNA WILD-TYPE" "DTNA WILD-TYPE" "DTNA WILD-TYPE" "DTNA WILD-TYPE" 
    TCGA-64-5774     TCGA-64-5775     TCGA-64-5778     TCGA-64-5779 
"DTNA WILD-TYPE" "DTNA WILD-TYPE" "DTNA WILD-TYPE" "DTNA WILD-TYPE" 
    TCGA-64-5781     TCGA-64-5815     TCGA-67-3770     TCGA-67-3771 
"DTNA WILD-TYPE" "DTNA WILD-TYPE" "DTNA WILD-TYPE"   "DTNA MUTATED" 
    TCGA-67-3772     TCGA-67-3773     TCGA-67-3774     TCGA-67-6215 
"DTNA WILD-TYPE" "DTNA WILD-TYPE" "DTNA WILD-TYPE" "DTNA WILD-TYPE" 
    TCGA-67-6216     TCGA-67-6217     TCGA-71-6725     TCGA-73-4658 
"DTNA WILD-TYPE" "DTNA WILD-TYPE" "DTNA WILD-TYPE" "DTNA WILD-TYPE" 
    TCGA-73-4659     TCGA-73-4662     TCGA-73-4666     TCGA-73-4668 
"DTNA WILD-TYPE" "DTNA WILD-TYPE" "DTNA WILD-TYPE" "DTNA WILD-TYPE" 
    TCGA-73-4670     TCGA-73-4675     TCGA-73-4676     TCGA-73-4677 
"DTNA WILD-TYPE" "DTNA WILD-TYPE" "DTNA WILD-TYPE" "DTNA WILD-TYPE" 
    TCGA-91-6828     TCGA-91-6829     TCGA-91-6831     TCGA-91-6835 
"DTNA WILD-TYPE" "DTNA WILD-TYPE" "DTNA WILD-TYPE" "DTNA WILD-TYPE" 
    TCGA-91-6836 
"DTNA WILD-TYPE" 
    TCGA-05-4249     TCGA-05-4250     TCGA-05-4382     TCGA-05-4384 
"DTNA WILD-TYPE" "DTNA WILD-TYPE"   "DTNA MUTATED" "DTNA WILD-TYPE" 
    TCGA-05-4390     TCGA-05-4396     TCGA-05-4397     TCGA-05-4398 
"DTNA WILD-TYPE"   "DTNA MUTATED"   "DTNA MUTATED" "DTNA WILD-TYPE" 
    TCGA-05-4402     TCGA-05-4405     TCGA-05-4415     TCGA-05-4417 
"DTNA WILD-TYPE" "DTNA WILD-TYPE" "DTNA WILD-TYPE" "DTNA WILD-TYPE" 
    TCGA-05-4418     TCGA-05-4420     TCGA-05-4424     TCGA-05-4426 
"DTNA WILD-TYPE" "DTNA WILD-TYPE" "DTNA WILD-TYPE" "DTNA WILD-TYPE" 
    TCGA-05-4427     TCGA-05-4430     TCGA-05-4432     TCGA-05-4433 
"DTNA WILD-TYPE" "DTNA WILD-TYPE" "DTNA WILD-TYPE" "DTNA WILD-TYPE" 
    TCGA-05-4434     TCGA-05-5420     TCGA-05-5423     TCGA-05-5425 
"DTNA WILD-TYPE" "DTNA WILD-TYPE" "DTNA WILD-TYPE" "DTNA WILD-TYPE" 
    TCGA-05-5429     TCGA-05-5715     TCGA-35-3615     TCGA-35-4122 
"DTNA WILD-TYPE" "DTNA WILD-TYPE" "DTNA WILD-TYPE" "DTNA WILD-TYPE" 
    TCGA-35-4123     TCGA-35-5375     TCGA-38-4625     TCGA-38-4626 
"DTNA WILD-TYPE"   "DTNA MUTATED"   "DTNA MUTATED" "DTNA WILD-TYPE" 
    TCGA-38-4627     TCGA-38-4628     TCGA-38-4629     TCGA-38-4630 
"DTNA WILD-TYPE" "DTNA WILD-TYPE" "DTNA WILD-TYPE" "DTNA WILD-TYPE" 
    TCGA-38-4631     TCGA-38-4632     TCGA-38-6178     TCGA-44-2655 
  "DTNA MUTATED" "DTNA WILD-TYPE" "DTNA WILD-TYPE" "DTNA WILD-TYPE" 
    TCGA-44-2656     TCGA-44-2657     TCGA-44-2659     TCGA-44-2661 
"DTNA WILD-TYPE" "DTNA WILD-TYPE" "DTNA WILD-TYPE" "DTNA WILD-TYPE" 
    TCGA-44-2662     TCGA-44-2665     TCGA-44-2666     TCGA-44-2668 
"DTNA WILD-TYPE" "DTNA WILD-TYPE" "DTNA WILD-TYPE" "DTNA WILD-TYPE" 
    TCGA-44-3396     TCGA-44-3398     TCGA-44-3918     TCGA-44-3919 
"DTNA WILD-TYPE" "DTNA WILD-TYPE" "DTNA WILD-TYPE" "DTNA WILD-TYPE" 
    TCGA-44-4112     TCGA-44-5643     TCGA-44-5645     TCGA-44-6144 
"DTNA WILD-TYPE" "DTNA WILD-TYPE" "DTNA WILD-TYPE" "DTNA WILD-TYPE" 
    TCGA-44-6145     TCGA-44-6146     TCGA-44-6147     TCGA-44-6148 
"DTNA WILD-TYPE" "DTNA WILD-TYPE" "DTNA WILD-TYPE" "DTNA WILD-TYPE" 
    TCGA-44-6774     TCGA-44-6775     TCGA-44-6776     TCGA-44-6777 
"DTNA WILD-TYPE" "DTNA WILD-TYPE"   "DTNA MUTATED" "DTNA WILD-TYPE" 
    TCGA-44-6778     TCGA-44-6779     TCGA-49-4486     TCGA-49-4487 
"DTNA WILD-TYPE" "DTNA WILD-TYPE" "DTNA WILD-TYPE" "DTNA WILD-TYPE" 
    TCGA-49-4488     TCGA-49-4490     TCGA-49-4494     TCGA-49-4501 
"DTNA WILD-TYPE" "DTNA WILD-TYPE" "DTNA WILD-TYPE" "DTNA WILD-TYPE" 
    TCGA-49-4505     TCGA-49-4506     TCGA-49-4507     TCGA-49-4510 
"DTNA WILD-TYPE" "DTNA WILD-TYPE" "DTNA WILD-TYPE" "DTNA WILD-TYPE" 
    TCGA-49-4512     TCGA-49-4514     TCGA-49-6742     TCGA-49-6743 
"DTNA WILD-TYPE" "DTNA WILD-TYPE" "DTNA WILD-TYPE" "DTNA WILD-TYPE" 
    TCGA-49-6744     TCGA-49-6745     TCGA-50-5044     TCGA-50-5045 
"DTNA WILD-TYPE" "DTNA WILD-TYPE" "DTNA WILD-TYPE" "DTNA WILD-TYPE" 
    TCGA-50-5049     TCGA-50-5051     TCGA-50-5055     TCGA-50-5066 
  "DTNA MUTATED" "DTNA WILD-TYPE" "DTNA WILD-TYPE" "DTNA WILD-TYPE" 
    TCGA-50-5068     TCGA-50-5072     TCGA-50-5930     TCGA-50-5931 
"DTNA WILD-TYPE" "DTNA WILD-TYPE" "DTNA WILD-TYPE" "DTNA WILD-TYPE" 
    TCGA-50-5932     TCGA-50-5933     TCGA-50-5935     TCGA-50-5936 
"DTNA WILD-TYPE" "DTNA WILD-TYPE" "DTNA WILD-TYPE" "DTNA WILD-TYPE" 
    TCGA-50-5939     TCGA-50-5941     TCGA-50-5942     TCGA-50-5944 
"DTNA WILD-TYPE" "DTNA WILD-TYPE"   "DTNA MUTATED" "DTNA WILD-TYPE" 
    TCGA-50-5946     TCGA-50-6590     TCGA-50-6591     TCGA-50-6592 
"DTNA WILD-TYPE" "DTNA WILD-TYPE" "DTNA WILD-TYPE" "DTNA WILD-TYPE" 
    TCGA-50-6593     TCGA-50-6594     TCGA-50-6595     TCGA-50-6597 
"DTNA WILD-TYPE" "DTNA WILD-TYPE" "DTNA WILD-TYPE" "DTNA WILD-TYPE" 
    TCGA-55-1592     TCGA-55-1594     TCGA-55-1595     TCGA-55-1596 
"DTNA WILD-TYPE" "DTNA WILD-TYPE" "DTNA WILD-TYPE" "DTNA WILD-TYPE" 
    TCGA-55-5899     TCGA-55-6543     TCGA-55-6642     TCGA-55-6712 
"DTNA WILD-TYPE" "DTNA WILD-TYPE" "DTNA WILD-TYPE" "DTNA WILD-TYPE" 
    TCGA-64-1676     TCGA-64-1677     TCGA-64-1678     TCGA-64-1680 
"DTNA WILD-TYPE" "DTNA WILD-TYPE" "DTNA WILD-TYPE" "DTNA WILD-TYPE" 
    TCGA-64-5774     TCGA-64-5775     TCGA-64-5778     TCGA-64-5779 
"DTNA WILD-TYPE" "DTNA WILD-TYPE" "DTNA WILD-TYPE" "DTNA WILD-TYPE" 
    TCGA-64-5781     TCGA-64-5815     TCGA-67-3770     TCGA-67-3771 
"DTNA WILD-TYPE" "DTNA WILD-TYPE" "DTNA WILD-TYPE"   "DTNA MUTATED" 
    TCGA-67-3772     TCGA-67-3773     TCGA-67-3774     TCGA-67-6215 
"DTNA WILD-TYPE" "DTNA WILD-TYPE" "DTNA WILD-TYPE" "DTNA WILD-TYPE" 
    TCGA-67-6216     TCGA-67-6217     TCGA-71-6725     TCGA-73-4658 
"DTNA WILD-TYPE" "DTNA WILD-TYPE" "DTNA WILD-TYPE" "DTNA WILD-TYPE" 
    TCGA-73-4659     TCGA-73-4662     TCGA-73-4666     TCGA-73-4668 
"DTNA WILD-TYPE" "DTNA WILD-TYPE" "DTNA WILD-TYPE" "DTNA WILD-TYPE" 
    TCGA-73-4670     TCGA-73-4675     TCGA-73-4676     TCGA-73-4677 
"DTNA WILD-TYPE" "DTNA WILD-TYPE" "DTNA WILD-TYPE" "DTNA WILD-TYPE" 
    TCGA-91-6828     TCGA-91-6829     TCGA-91-6831     TCGA-91-6835 
"DTNA WILD-TYPE" "DTNA WILD-TYPE" "DTNA WILD-TYPE" "DTNA WILD-TYPE" 
    TCGA-91-6836 
"DTNA WILD-TYPE" 
    TCGA-05-4249     TCGA-05-4250     TCGA-05-4382     TCGA-05-4384 
"DTNA WILD-TYPE" "DTNA WILD-TYPE"   "DTNA MUTATED" "DTNA WILD-TYPE" 
    TCGA-05-4390     TCGA-05-4396     TCGA-05-4397     TCGA-05-4398 
"DTNA WILD-TYPE"   "DTNA MUTATED"   "DTNA MUTATED" "DTNA WILD-TYPE" 
    TCGA-05-4402     TCGA-05-4405     TCGA-05-4415     TCGA-05-4417 
"DTNA WILD-TYPE" "DTNA WILD-TYPE" "DTNA WILD-TYPE" "DTNA WILD-TYPE" 
    TCGA-05-4418     TCGA-05-4420     TCGA-05-4424     TCGA-05-4426 
"DTNA WILD-TYPE" "DTNA WILD-TYPE" "DTNA WILD-TYPE" "DTNA WILD-TYPE" 
    TCGA-05-4427     TCGA-05-4430     TCGA-05-4432     TCGA-05-4433 
"DTNA WILD-TYPE" "DTNA WILD-TYPE" "DTNA WILD-TYPE" "DTNA WILD-TYPE" 
    TCGA-05-4434     TCGA-05-5420     TCGA-05-5423     TCGA-05-5425 
"DTNA WILD-TYPE" "DTNA WILD-TYPE" "DTNA WILD-TYPE" "DTNA WILD-TYPE" 
    TCGA-05-5429     TCGA-05-5715     TCGA-35-3615     TCGA-35-4122 
"DTNA WILD-TYPE" "DTNA WILD-TYPE" "DTNA WILD-TYPE" "DTNA WILD-TYPE" 
    TCGA-35-4123     TCGA-35-5375     TCGA-38-4625     TCGA-38-4626 
"DTNA WILD-TYPE"   "DTNA MUTATED"   "DTNA MUTATED" "DTNA WILD-TYPE" 
    TCGA-38-4627     TCGA-38-4628     TCGA-38-4629     TCGA-38-4630 
"DTNA WILD-TYPE" "DTNA WILD-TYPE" "DTNA WILD-TYPE" "DTNA WILD-TYPE" 
    TCGA-38-4631     TCGA-38-4632     TCGA-38-6178     TCGA-44-2655 
  "DTNA MUTATED" "DTNA WILD-TYPE" "DTNA WILD-TYPE" "DTNA WILD-TYPE" 
    TCGA-44-2656     TCGA-44-2657     TCGA-44-2659     TCGA-44-2661 
"DTNA WILD-TYPE" "DTNA WILD-TYPE" "DTNA WILD-TYPE" "DTNA WILD-TYPE" 
    TCGA-44-2662     TCGA-44-2665     TCGA-44-2666     TCGA-44-2668 
"DTNA WILD-TYPE" "DTNA WILD-TYPE" "DTNA WILD-TYPE" "DTNA WILD-TYPE" 
    TCGA-44-3396     TCGA-44-3398     TCGA-44-3918     TCGA-44-3919 
"DTNA WILD-TYPE" "DTNA WILD-TYPE" "DTNA WILD-TYPE" "DTNA WILD-TYPE" 
    TCGA-44-4112     TCGA-44-5643     TCGA-44-5645     TCGA-44-6144 
"DTNA WILD-TYPE" "DTNA WILD-TYPE" "DTNA WILD-TYPE" "DTNA WILD-TYPE" 
    TCGA-44-6145     TCGA-44-6146     TCGA-44-6147     TCGA-44-6148 
"DTNA WILD-TYPE" "DTNA WILD-TYPE" "DTNA WILD-TYPE" "DTNA WILD-TYPE" 
    TCGA-44-6774     TCGA-44-6775     TCGA-44-6776     TCGA-44-6777 
"DTNA WILD-TYPE" "DTNA WILD-TYPE"   "DTNA MUTATED" "DTNA WILD-TYPE" 
    TCGA-44-6778     TCGA-44-6779     TCGA-49-4486     TCGA-49-4487 
"DTNA WILD-TYPE" "DTNA WILD-TYPE" "DTNA WILD-TYPE" "DTNA WILD-TYPE" 
    TCGA-49-4488     TCGA-49-4490     TCGA-49-4494     TCGA-49-4501 
"DTNA WILD-TYPE" "DTNA WILD-TYPE" "DTNA WILD-TYPE" "DTNA WILD-TYPE" 
    TCGA-49-4505     TCGA-49-4506     TCGA-49-4507     TCGA-49-4510 
"DTNA WILD-TYPE" "DTNA WILD-TYPE" "DTNA WILD-TYPE" "DTNA WILD-TYPE" 
    TCGA-49-4512     TCGA-49-4514     TCGA-49-6742     TCGA-49-6743 
"DTNA WILD-TYPE" "DTNA WILD-TYPE" "DTNA WILD-TYPE" "DTNA WILD-TYPE" 
    TCGA-49-6744     TCGA-49-6745     TCGA-50-5044     TCGA-50-5045 
"DTNA WILD-TYPE" "DTNA WILD-TYPE" "DTNA WILD-TYPE" "DTNA WILD-TYPE" 
    TCGA-50-5049     TCGA-50-5051     TCGA-50-5055     TCGA-50-5066 
  "DTNA MUTATED" "DTNA WILD-TYPE" "DTNA WILD-TYPE" "DTNA WILD-TYPE" 
    TCGA-50-5068     TCGA-50-5072     TCGA-50-5930     TCGA-50-5931 
"DTNA WILD-TYPE" "DTNA WILD-TYPE" "DTNA WILD-TYPE" "DTNA WILD-TYPE" 
    TCGA-50-5932     TCGA-50-5933     TCGA-50-5935     TCGA-50-5936 
"DTNA WILD-TYPE" "DTNA WILD-TYPE" "DTNA WILD-TYPE" "DTNA WILD-TYPE" 
    TCGA-50-5939     TCGA-50-5941     TCGA-50-5942     TCGA-50-5944 
"DTNA WILD-TYPE" "DTNA WILD-TYPE"   "DTNA MUTATED" "DTNA WILD-TYPE" 
    TCGA-50-5946     TCGA-50-6590     TCGA-50-6591     TCGA-50-6592 
"DTNA WILD-TYPE" "DTNA WILD-TYPE" "DTNA WILD-TYPE" "DTNA WILD-TYPE" 
    TCGA-50-6593     TCGA-50-6594     TCGA-50-6595     TCGA-50-6597 
"DTNA WILD-TYPE" "DTNA WILD-TYPE" "DTNA WILD-TYPE" "DTNA WILD-TYPE" 
    TCGA-55-1592     TCGA-55-1594     TCGA-55-1595     TCGA-55-1596 
"DTNA WILD-TYPE" "DTNA WILD-TYPE" "DTNA WILD-TYPE" "DTNA WILD-TYPE" 
    TCGA-55-5899     TCGA-55-6543     TCGA-55-6642     TCGA-55-6712 
"DTNA WILD-TYPE" "DTNA WILD-TYPE" "DTNA WILD-TYPE" "DTNA WILD-TYPE" 
    TCGA-64-1676     TCGA-64-1677     TCGA-64-1678     TCGA-64-1680 
"DTNA WILD-TYPE" "DTNA WILD-TYPE" "DTNA WILD-TYPE" "DTNA WILD-TYPE" 
    TCGA-64-5774     TCGA-64-5775     TCGA-64-5778     TCGA-64-5779 
"DTNA WILD-TYPE" "DTNA WILD-TYPE" "DTNA WILD-TYPE" "DTNA WILD-TYPE" 
    TCGA-64-5781     TCGA-64-5815     TCGA-67-3770     TCGA-67-3771 
"DTNA WILD-TYPE" "DTNA WILD-TYPE" "DTNA WILD-TYPE"   "DTNA MUTATED" 
    TCGA-67-3772     TCGA-67-3773     TCGA-67-3774     TCGA-67-6215 
"DTNA WILD-TYPE" "DTNA WILD-TYPE" "DTNA WILD-TYPE" "DTNA WILD-TYPE" 
    TCGA-67-6216     TCGA-67-6217     TCGA-71-6725     TCGA-73-4658 
"DTNA WILD-TYPE" "DTNA WILD-TYPE" "DTNA WILD-TYPE" "DTNA WILD-TYPE" 
    TCGA-73-4659     TCGA-73-4662     TCGA-73-4666     TCGA-73-4668 
"DTNA WILD-TYPE" "DTNA WILD-TYPE" "DTNA WILD-TYPE" "DTNA WILD-TYPE" 
    TCGA-73-4670     TCGA-73-4675     TCGA-73-4676     TCGA-73-4677 
"DTNA WILD-TYPE" "DTNA WILD-TYPE" "DTNA WILD-TYPE" "DTNA WILD-TYPE" 
    TCGA-91-6828     TCGA-91-6829     TCGA-91-6831     TCGA-91-6835 
"DTNA WILD-TYPE" "DTNA WILD-TYPE" "DTNA WILD-TYPE" "DTNA WILD-TYPE" 
    TCGA-91-6836 
"DTNA WILD-TYPE" 
[1] "hr=" "1.4"
D241V2, continuous
D241V3, binary
[1] "tbl2"
                cls
clus             [,1] [,2]
  DTNA MUTATED      5    6
  DTNA WILD-TYPE   88   73
        clus
vv       DTNA MUTATED DTNA WILD-TYPE
  FEMALE            5             88
  MALE              6             73
D241V4, continuous
[1] "Remove cluster labels:" "DTNA MUTATED"          
clus
  DTNA MUTATED DTNA WILD-TYPE 
             1             11 
    TCGA-35-4122     TCGA-35-4123     TCGA-64-1677     TCGA-64-5778 
"DTNA WILD-TYPE" "DTNA WILD-TYPE" "DTNA WILD-TYPE" "DTNA WILD-TYPE" 
    TCGA-71-6725     TCGA-73-4659     TCGA-73-4662     TCGA-73-4666 
"DTNA WILD-TYPE" "DTNA WILD-TYPE" "DTNA WILD-TYPE" "DTNA WILD-TYPE" 
    TCGA-73-4668     TCGA-73-4676     TCGA-75-5122 
"DTNA WILD-TYPE" "DTNA WILD-TYPE" "DTNA WILD-TYPE" 
D241V5, multiclass
D241V6, multiclass
    clus
vv   DTNA MUTATED DTNA WILD-TYPE
  T1            3             38
  T2            7            101
  T3            0             14
  T4            1              7
D241V7, multiclass
       clus
vv      DTNA MUTATED DTNA WILD-TYPE
  N0               8             87
  N1               2             35
  N2+N3            1             34
D241V8, multiclass
    clus
vv   DTNA MUTATED DTNA WILD-TYPE
  M0           10            127
  M1            0              9
  MX            1             21
D241V9, multiclass
     clus
vv    DTNA MUTATED DTNA WILD-TYPE
  I              7             81
  II             1             32
  III            2             37
  IV             0              9
D241V10, binary
[1] "tbl2"
                cls
clus             [,1] [,2]
  DTNA MUTATED      2    9
  DTNA WILD-TYPE   14  147
     clus
vv    DTNA MUTATED DTNA WILD-TYPE
  NO             2             14
  YES            9            147
D241V11, continuous
D241V12, continuous
D241V13, multiclass
                                             clus
vv                                            DTNA MUTATED DTNA WILD-TYPE
  CURRENT REFORMED SMOKER FOR < OR = 15 YEARS            7             55
  CURRENT REFORMED SMOKER FOR > 15 YEARS                 1             45
  CURRENT SMOKER                                         2             26
  LIFELONG NON-SMOKER                                    0             24
D241V14, continuous

Clustering(242) Variable = DBX2 MUTATION ANALYSIS
D242V1, survival
                sevent
clus2             0  1
  DBX2 MUTATED    2  2
  DBX2 WILD-TYPE 97 48
  DBX2 MUTATED DBX2 WILD-TYPE 
             4            145 
  DBX2 MUTATED DBX2 WILD-TYPE 
             2             48 
$`DBX2 MUTATED`
TCGA-05-4390 TCGA-44-6777 TCGA-55-1592 TCGA-67-3771 
       37.02        32.45        23.05         1.97 

$`DBX2 WILD-TYPE`
TCGA-05-4249 TCGA-05-4250 TCGA-05-4382 TCGA-05-4384 TCGA-05-4396 TCGA-05-4397 
       38.07         3.98        19.92        14.01         9.96        24.03 
TCGA-05-4398 TCGA-05-4402 TCGA-05-4405 TCGA-05-4415 TCGA-05-4417 TCGA-05-4418 
       47.05         8.02        20.05         2.96        14.93         8.98 
TCGA-05-4420 TCGA-05-4424 TCGA-05-4426 TCGA-05-4427 TCGA-05-4430 TCGA-05-4432 
       29.95        30.02        26.01        26.01        25.02        25.02 
TCGA-05-4433 TCGA-05-4434 TCGA-05-5420 TCGA-05-5423 TCGA-05-5425 TCGA-05-5429 
       24.00        15.02         1.02         4.96         2.96         0.99 
TCGA-05-5715 TCGA-35-3615 TCGA-35-4122 TCGA-35-4123 TCGA-35-5375 TCGA-38-4625 
        2.04         0.46         7.36         5.95         8.68        47.61 
TCGA-38-4626 TCGA-38-4627 TCGA-38-4628 TCGA-38-4629 TCGA-38-4630 TCGA-38-4631 
       85.32        37.71        49.02        28.37        35.28        11.64 
TCGA-38-4632 TCGA-38-6178 TCGA-44-2655 TCGA-44-2656 TCGA-44-2657 TCGA-44-2659 
       44.61         5.19        18.87        19.10        13.15        17.39 
TCGA-44-2661 TCGA-44-2662 TCGA-44-2665 TCGA-44-2666 TCGA-44-2668 TCGA-44-3396 
        3.39        15.78        13.15         3.19         8.09        10.22 
TCGA-44-3398 TCGA-44-3918 TCGA-44-3919 TCGA-44-4112 TCGA-44-5643 TCGA-44-5645 
        8.32         6.44         6.21         4.60         3.48         6.84 
TCGA-44-6144 TCGA-44-6145 TCGA-44-6146 TCGA-44-6147 TCGA-44-6148 TCGA-44-6774 
        0.30         3.35         9.93         7.76         3.12         5.42 
TCGA-44-6775 TCGA-44-6776 TCGA-44-6778 TCGA-44-6779 TCGA-49-4486 TCGA-49-4487 
        2.70        63.72        36.49        16.41        76.21        28.11 
TCGA-49-4488 TCGA-49-4490 TCGA-49-4494 TCGA-49-4501 TCGA-49-4505 TCGA-49-4506 
       28.57        12.66        35.54        46.72        14.07        32.84 
TCGA-49-4507 TCGA-49-4510 TCGA-49-4512 TCGA-49-4514 TCGA-49-6742 TCGA-49-6743 
        8.81        29.46        29.75        43.20        15.02        12.13 
TCGA-49-6744 TCGA-49-6745 TCGA-50-5044 TCGA-50-5045 TCGA-50-5049 TCGA-50-5051 
       12.99         4.93        20.48        71.47        48.82        14.96 
TCGA-50-5055 TCGA-50-5066 TCGA-50-5068 TCGA-50-5072 TCGA-50-5930 TCGA-50-5931 
       25.81         9.76        49.28         8.05         9.27         8.78 
TCGA-50-5932 TCGA-50-5933 TCGA-50-5935 TCGA-50-5936 TCGA-50-5939 TCGA-50-5941 
       35.87        77.88        21.47         8.45        15.12         9.37 
TCGA-50-5942 TCGA-50-5944 TCGA-50-5946 TCGA-50-6590 TCGA-50-6591 TCGA-50-6592 
        4.44        12.26        11.47        42.31         3.88        25.51 
TCGA-50-6593 TCGA-50-6594 TCGA-50-6595 TCGA-50-6597 TCGA-55-1594 TCGA-55-1595 
       11.05        12.16         6.21        33.37        38.73        48.62 
TCGA-55-1596 TCGA-55-5899 TCGA-55-6543 TCGA-55-6642 TCGA-55-6712 TCGA-64-1676 
       45.17         2.86         0.07        32.61         0.79        56.81 
TCGA-64-1677 TCGA-64-1678 TCGA-64-1680 TCGA-64-5774 TCGA-64-5775 TCGA-64-5778 
       20.65        39.09        37.02        83.84         0.10        30.44 
TCGA-64-5779 TCGA-64-5781 TCGA-64-5815 TCGA-67-3770 TCGA-67-3772 TCGA-67-3773 
       16.67        39.52         7.33         0.99         0.59         2.04 
TCGA-67-3774 TCGA-67-6215 TCGA-67-6216 TCGA-67-6217 TCGA-71-6725 TCGA-73-4658 
        0.59         0.89         0.69        13.87         2.01        52.57 
TCGA-73-4659 TCGA-73-4662 TCGA-73-4666 TCGA-73-4668 TCGA-73-4670 TCGA-73-4675 
       23.38        29.95        20.28        15.35         0.46         1.32 
TCGA-73-4676 TCGA-73-4677 TCGA-91-6828 TCGA-91-6829 TCGA-91-6831 TCGA-91-6835 
        4.01         1.25         1.22        41.33         1.28         1.15 
TCGA-91-6836 
        0.36 

  DBX2 MUTATED DBX2 WILD-TYPE 
          1.97           0.07 
  DBX2 MUTATED DBX2 WILD-TYPE 
         37.02          85.32 
  DBX2 MUTATED DBX2 WILD-TYPE 
         27.75          13.15 
[1] "2.0 - 37.0 (27.8)" "0.1 - 85.3 (13.2)"
    TCGA-05-4249     TCGA-05-4250     TCGA-05-4382     TCGA-05-4384 
"DBX2 WILD-TYPE" "DBX2 WILD-TYPE" "DBX2 WILD-TYPE" "DBX2 WILD-TYPE" 
    TCGA-05-4390     TCGA-05-4396     TCGA-05-4397     TCGA-05-4398 
  "DBX2 MUTATED" "DBX2 WILD-TYPE" "DBX2 WILD-TYPE" "DBX2 WILD-TYPE" 
    TCGA-05-4402     TCGA-05-4405     TCGA-05-4415     TCGA-05-4417 
"DBX2 WILD-TYPE" "DBX2 WILD-TYPE" "DBX2 WILD-TYPE" "DBX2 WILD-TYPE" 
    TCGA-05-4418     TCGA-05-4420     TCGA-05-4424     TCGA-05-4426 
"DBX2 WILD-TYPE" "DBX2 WILD-TYPE" "DBX2 WILD-TYPE" "DBX2 WILD-TYPE" 
    TCGA-05-4427     TCGA-05-4430     TCGA-05-4432     TCGA-05-4433 
"DBX2 WILD-TYPE" "DBX2 WILD-TYPE" "DBX2 WILD-TYPE" "DBX2 WILD-TYPE" 
    TCGA-05-4434     TCGA-05-5420     TCGA-05-5423     TCGA-05-5425 
"DBX2 WILD-TYPE" "DBX2 WILD-TYPE" "DBX2 WILD-TYPE" "DBX2 WILD-TYPE" 
    TCGA-05-5429     TCGA-05-5715     TCGA-35-3615     TCGA-35-4122 
"DBX2 WILD-TYPE" "DBX2 WILD-TYPE" "DBX2 WILD-TYPE" "DBX2 WILD-TYPE" 
    TCGA-35-4123     TCGA-35-5375     TCGA-38-4625     TCGA-38-4626 
"DBX2 WILD-TYPE" "DBX2 WILD-TYPE" "DBX2 WILD-TYPE" "DBX2 WILD-TYPE" 
    TCGA-38-4627     TCGA-38-4628     TCGA-38-4629     TCGA-38-4630 
"DBX2 WILD-TYPE" "DBX2 WILD-TYPE" "DBX2 WILD-TYPE" "DBX2 WILD-TYPE" 
    TCGA-38-4631     TCGA-38-4632     TCGA-38-6178     TCGA-44-2655 
"DBX2 WILD-TYPE" "DBX2 WILD-TYPE" "DBX2 WILD-TYPE" "DBX2 WILD-TYPE" 
    TCGA-44-2656     TCGA-44-2657     TCGA-44-2659     TCGA-44-2661 
"DBX2 WILD-TYPE" "DBX2 WILD-TYPE" "DBX2 WILD-TYPE" "DBX2 WILD-TYPE" 
    TCGA-44-2662     TCGA-44-2665     TCGA-44-2666     TCGA-44-2668 
"DBX2 WILD-TYPE" "DBX2 WILD-TYPE" "DBX2 WILD-TYPE" "DBX2 WILD-TYPE" 
    TCGA-44-3396     TCGA-44-3398     TCGA-44-3918     TCGA-44-3919 
"DBX2 WILD-TYPE" "DBX2 WILD-TYPE" "DBX2 WILD-TYPE" "DBX2 WILD-TYPE" 
    TCGA-44-4112     TCGA-44-5643     TCGA-44-5645     TCGA-44-6144 
"DBX2 WILD-TYPE" "DBX2 WILD-TYPE" "DBX2 WILD-TYPE" "DBX2 WILD-TYPE" 
    TCGA-44-6145     TCGA-44-6146     TCGA-44-6147     TCGA-44-6148 
"DBX2 WILD-TYPE" "DBX2 WILD-TYPE" "DBX2 WILD-TYPE" "DBX2 WILD-TYPE" 
    TCGA-44-6774     TCGA-44-6775     TCGA-44-6776     TCGA-44-6777 
"DBX2 WILD-TYPE" "DBX2 WILD-TYPE" "DBX2 WILD-TYPE"   "DBX2 MUTATED" 
    TCGA-44-6778     TCGA-44-6779     TCGA-49-4486     TCGA-49-4487 
"DBX2 WILD-TYPE" "DBX2 WILD-TYPE" "DBX2 WILD-TYPE" "DBX2 WILD-TYPE" 
    TCGA-49-4488     TCGA-49-4490     TCGA-49-4494     TCGA-49-4501 
"DBX2 WILD-TYPE" "DBX2 WILD-TYPE" "DBX2 WILD-TYPE" "DBX2 WILD-TYPE" 
    TCGA-49-4505     TCGA-49-4506     TCGA-49-4507     TCGA-49-4510 
"DBX2 WILD-TYPE" "DBX2 WILD-TYPE" "DBX2 WILD-TYPE" "DBX2 WILD-TYPE" 
    TCGA-49-4512     TCGA-49-4514     TCGA-49-6742     TCGA-49-6743 
"DBX2 WILD-TYPE" "DBX2 WILD-TYPE" "DBX2 WILD-TYPE" "DBX2 WILD-TYPE" 
    TCGA-49-6744     TCGA-49-6745     TCGA-50-5044     TCGA-50-5045 
"DBX2 WILD-TYPE" "DBX2 WILD-TYPE" "DBX2 WILD-TYPE" "DBX2 WILD-TYPE" 
    TCGA-50-5049     TCGA-50-5051     TCGA-50-5055     TCGA-50-5066 
"DBX2 WILD-TYPE" "DBX2 WILD-TYPE" "DBX2 WILD-TYPE" "DBX2 WILD-TYPE" 
    TCGA-50-5068     TCGA-50-5072     TCGA-50-5930     TCGA-50-5931 
"DBX2 WILD-TYPE" "DBX2 WILD-TYPE" "DBX2 WILD-TYPE" "DBX2 WILD-TYPE" 
    TCGA-50-5932     TCGA-50-5933     TCGA-50-5935     TCGA-50-5936 
"DBX2 WILD-TYPE" "DBX2 WILD-TYPE" "DBX2 WILD-TYPE" "DBX2 WILD-TYPE" 
    TCGA-50-5939     TCGA-50-5941     TCGA-50-5942     TCGA-50-5944 
"DBX2 WILD-TYPE" "DBX2 WILD-TYPE" "DBX2 WILD-TYPE" "DBX2 WILD-TYPE" 
    TCGA-50-5946     TCGA-50-6590     TCGA-50-6591     TCGA-50-6592 
"DBX2 WILD-TYPE" "DBX2 WILD-TYPE" "DBX2 WILD-TYPE" "DBX2 WILD-TYPE" 
    TCGA-50-6593     TCGA-50-6594     TCGA-50-6595     TCGA-50-6597 
"DBX2 WILD-TYPE" "DBX2 WILD-TYPE" "DBX2 WILD-TYPE" "DBX2 WILD-TYPE" 
    TCGA-55-1592     TCGA-55-1594     TCGA-55-1595     TCGA-55-1596 
  "DBX2 MUTATED" "DBX2 WILD-TYPE" "DBX2 WILD-TYPE" "DBX2 WILD-TYPE" 
    TCGA-55-5899     TCGA-55-6543     TCGA-55-6642     TCGA-55-6712 
"DBX2 WILD-TYPE" "DBX2 WILD-TYPE" "DBX2 WILD-TYPE" "DBX2 WILD-TYPE" 
    TCGA-64-1676     TCGA-64-1677     TCGA-64-1678     TCGA-64-1680 
"DBX2 WILD-TYPE" "DBX2 WILD-TYPE" "DBX2 WILD-TYPE" "DBX2 WILD-TYPE" 
    TCGA-64-5774     TCGA-64-5775     TCGA-64-5778     TCGA-64-5779 
"DBX2 WILD-TYPE" "DBX2 WILD-TYPE" "DBX2 WILD-TYPE" "DBX2 WILD-TYPE" 
    TCGA-64-5781     TCGA-64-5815     TCGA-67-3770     TCGA-67-3771 
"DBX2 WILD-TYPE" "DBX2 WILD-TYPE" "DBX2 WILD-TYPE"   "DBX2 MUTATED" 
    TCGA-67-3772     TCGA-67-3773     TCGA-67-3774     TCGA-67-6215 
"DBX2 WILD-TYPE" "DBX2 WILD-TYPE" "DBX2 WILD-TYPE" "DBX2 WILD-TYPE" 
    TCGA-67-6216     TCGA-67-6217     TCGA-71-6725     TCGA-73-4658 
"DBX2 WILD-TYPE" "DBX2 WILD-TYPE" "DBX2 WILD-TYPE" "DBX2 WILD-TYPE" 
    TCGA-73-4659     TCGA-73-4662     TCGA-73-4666     TCGA-73-4668 
"DBX2 WILD-TYPE" "DBX2 WILD-TYPE" "DBX2 WILD-TYPE" "DBX2 WILD-TYPE" 
    TCGA-73-4670     TCGA-73-4675     TCGA-73-4676     TCGA-73-4677 
"DBX2 WILD-TYPE" "DBX2 WILD-TYPE" "DBX2 WILD-TYPE" "DBX2 WILD-TYPE" 
    TCGA-91-6828     TCGA-91-6829     TCGA-91-6831     TCGA-91-6835 
"DBX2 WILD-TYPE" "DBX2 WILD-TYPE" "DBX2 WILD-TYPE" "DBX2 WILD-TYPE" 
    TCGA-91-6836 
"DBX2 WILD-TYPE" 
    TCGA-05-4249     TCGA-05-4250     TCGA-05-4382     TCGA-05-4384 
"DBX2 WILD-TYPE" "DBX2 WILD-TYPE" "DBX2 WILD-TYPE" "DBX2 WILD-TYPE" 
    TCGA-05-4390     TCGA-05-4396     TCGA-05-4397     TCGA-05-4398 
  "DBX2 MUTATED" "DBX2 WILD-TYPE" "DBX2 WILD-TYPE" "DBX2 WILD-TYPE" 
    TCGA-05-4402     TCGA-05-4405     TCGA-05-4415     TCGA-05-4417 
"DBX2 WILD-TYPE" "DBX2 WILD-TYPE" "DBX2 WILD-TYPE" "DBX2 WILD-TYPE" 
    TCGA-05-4418     TCGA-05-4420     TCGA-05-4424     TCGA-05-4426 
"DBX2 WILD-TYPE" "DBX2 WILD-TYPE" "DBX2 WILD-TYPE" "DBX2 WILD-TYPE" 
    TCGA-05-4427     TCGA-05-4430     TCGA-05-4432     TCGA-05-4433 
"DBX2 WILD-TYPE" "DBX2 WILD-TYPE" "DBX2 WILD-TYPE" "DBX2 WILD-TYPE" 
    TCGA-05-4434     TCGA-05-5420     TCGA-05-5423     TCGA-05-5425 
"DBX2 WILD-TYPE" "DBX2 WILD-TYPE" "DBX2 WILD-TYPE" "DBX2 WILD-TYPE" 
    TCGA-05-5429     TCGA-05-5715     TCGA-35-3615     TCGA-35-4122 
"DBX2 WILD-TYPE" "DBX2 WILD-TYPE" "DBX2 WILD-TYPE" "DBX2 WILD-TYPE" 
    TCGA-35-4123     TCGA-35-5375     TCGA-38-4625     TCGA-38-4626 
"DBX2 WILD-TYPE" "DBX2 WILD-TYPE" "DBX2 WILD-TYPE" "DBX2 WILD-TYPE" 
    TCGA-38-4627     TCGA-38-4628     TCGA-38-4629     TCGA-38-4630 
"DBX2 WILD-TYPE" "DBX2 WILD-TYPE" "DBX2 WILD-TYPE" "DBX2 WILD-TYPE" 
    TCGA-38-4631     TCGA-38-4632     TCGA-38-6178     TCGA-44-2655 
"DBX2 WILD-TYPE" "DBX2 WILD-TYPE" "DBX2 WILD-TYPE" "DBX2 WILD-TYPE" 
    TCGA-44-2656     TCGA-44-2657     TCGA-44-2659     TCGA-44-2661 
"DBX2 WILD-TYPE" "DBX2 WILD-TYPE" "DBX2 WILD-TYPE" "DBX2 WILD-TYPE" 
    TCGA-44-2662     TCGA-44-2665     TCGA-44-2666     TCGA-44-2668 
"DBX2 WILD-TYPE" "DBX2 WILD-TYPE" "DBX2 WILD-TYPE" "DBX2 WILD-TYPE" 
    TCGA-44-3396     TCGA-44-3398     TCGA-44-3918     TCGA-44-3919 
"DBX2 WILD-TYPE" "DBX2 WILD-TYPE" "DBX2 WILD-TYPE" "DBX2 WILD-TYPE" 
    TCGA-44-4112     TCGA-44-5643     TCGA-44-5645     TCGA-44-6144 
"DBX2 WILD-TYPE" "DBX2 WILD-TYPE" "DBX2 WILD-TYPE" "DBX2 WILD-TYPE" 
    TCGA-44-6145     TCGA-44-6146     TCGA-44-6147     TCGA-44-6148 
"DBX2 WILD-TYPE" "DBX2 WILD-TYPE" "DBX2 WILD-TYPE" "DBX2 WILD-TYPE" 
    TCGA-44-6774     TCGA-44-6775     TCGA-44-6776     TCGA-44-6777 
"DBX2 WILD-TYPE" "DBX2 WILD-TYPE" "DBX2 WILD-TYPE"   "DBX2 MUTATED" 
    TCGA-44-6778     TCGA-44-6779     TCGA-49-4486     TCGA-49-4487 
"DBX2 WILD-TYPE" "DBX2 WILD-TYPE" "DBX2 WILD-TYPE" "DBX2 WILD-TYPE" 
    TCGA-49-4488     TCGA-49-4490     TCGA-49-4494     TCGA-49-4501 
"DBX2 WILD-TYPE" "DBX2 WILD-TYPE" "DBX2 WILD-TYPE" "DBX2 WILD-TYPE" 
    TCGA-49-4505     TCGA-49-4506     TCGA-49-4507     TCGA-49-4510 
"DBX2 WILD-TYPE" "DBX2 WILD-TYPE" "DBX2 WILD-TYPE" "DBX2 WILD-TYPE" 
    TCGA-49-4512     TCGA-49-4514     TCGA-49-6742     TCGA-49-6743 
"DBX2 WILD-TYPE" "DBX2 WILD-TYPE" "DBX2 WILD-TYPE" "DBX2 WILD-TYPE" 
    TCGA-49-6744     TCGA-49-6745     TCGA-50-5044     TCGA-50-5045 
"DBX2 WILD-TYPE" "DBX2 WILD-TYPE" "DBX2 WILD-TYPE" "DBX2 WILD-TYPE" 
    TCGA-50-5049     TCGA-50-5051     TCGA-50-5055     TCGA-50-5066 
"DBX2 WILD-TYPE" "DBX2 WILD-TYPE" "DBX2 WILD-TYPE" "DBX2 WILD-TYPE" 
    TCGA-50-5068     TCGA-50-5072     TCGA-50-5930     TCGA-50-5931 
"DBX2 WILD-TYPE" "DBX2 WILD-TYPE" "DBX2 WILD-TYPE" "DBX2 WILD-TYPE" 
    TCGA-50-5932     TCGA-50-5933     TCGA-50-5935     TCGA-50-5936 
"DBX2 WILD-TYPE" "DBX2 WILD-TYPE" "DBX2 WILD-TYPE" "DBX2 WILD-TYPE" 
    TCGA-50-5939     TCGA-50-5941     TCGA-50-5942     TCGA-50-5944 
"DBX2 WILD-TYPE" "DBX2 WILD-TYPE" "DBX2 WILD-TYPE" "DBX2 WILD-TYPE" 
    TCGA-50-5946     TCGA-50-6590     TCGA-50-6591     TCGA-50-6592 
"DBX2 WILD-TYPE" "DBX2 WILD-TYPE" "DBX2 WILD-TYPE" "DBX2 WILD-TYPE" 
    TCGA-50-6593     TCGA-50-6594     TCGA-50-6595     TCGA-50-6597 
"DBX2 WILD-TYPE" "DBX2 WILD-TYPE" "DBX2 WILD-TYPE" "DBX2 WILD-TYPE" 
    TCGA-55-1592     TCGA-55-1594     TCGA-55-1595     TCGA-55-1596 
  "DBX2 MUTATED" "DBX2 WILD-TYPE" "DBX2 WILD-TYPE" "DBX2 WILD-TYPE" 
    TCGA-55-5899     TCGA-55-6543     TCGA-55-6642     TCGA-55-6712 
"DBX2 WILD-TYPE" "DBX2 WILD-TYPE" "DBX2 WILD-TYPE" "DBX2 WILD-TYPE" 
    TCGA-64-1676     TCGA-64-1677     TCGA-64-1678     TCGA-64-1680 
"DBX2 WILD-TYPE" "DBX2 WILD-TYPE" "DBX2 WILD-TYPE" "DBX2 WILD-TYPE" 
    TCGA-64-5774     TCGA-64-5775     TCGA-64-5778     TCGA-64-5779 
"DBX2 WILD-TYPE" "DBX2 WILD-TYPE" "DBX2 WILD-TYPE" "DBX2 WILD-TYPE" 
    TCGA-64-5781     TCGA-64-5815     TCGA-67-3770     TCGA-67-3771 
"DBX2 WILD-TYPE" "DBX2 WILD-TYPE" "DBX2 WILD-TYPE"   "DBX2 MUTATED" 
    TCGA-67-3772     TCGA-67-3773     TCGA-67-3774     TCGA-67-6215 
"DBX2 WILD-TYPE" "DBX2 WILD-TYPE" "DBX2 WILD-TYPE" "DBX2 WILD-TYPE" 
    TCGA-67-6216     TCGA-67-6217     TCGA-71-6725     TCGA-73-4658 
"DBX2 WILD-TYPE" "DBX2 WILD-TYPE" "DBX2 WILD-TYPE" "DBX2 WILD-TYPE" 
    TCGA-73-4659     TCGA-73-4662     TCGA-73-4666     TCGA-73-4668 
"DBX2 WILD-TYPE" "DBX2 WILD-TYPE" "DBX2 WILD-TYPE" "DBX2 WILD-TYPE" 
    TCGA-73-4670     TCGA-73-4675     TCGA-73-4676     TCGA-73-4677 
"DBX2 WILD-TYPE" "DBX2 WILD-TYPE" "DBX2 WILD-TYPE" "DBX2 WILD-TYPE" 
    TCGA-91-6828     TCGA-91-6829     TCGA-91-6831     TCGA-91-6835 
"DBX2 WILD-TYPE" "DBX2 WILD-TYPE" "DBX2 WILD-TYPE" "DBX2 WILD-TYPE" 
    TCGA-91-6836 
"DBX2 WILD-TYPE" 
    TCGA-05-4249     TCGA-05-4250     TCGA-05-4382     TCGA-05-4384 
"DBX2 WILD-TYPE" "DBX2 WILD-TYPE" "DBX2 WILD-TYPE" "DBX2 WILD-TYPE" 
    TCGA-05-4390     TCGA-05-4396     TCGA-05-4397     TCGA-05-4398 
  "DBX2 MUTATED" "DBX2 WILD-TYPE" "DBX2 WILD-TYPE" "DBX2 WILD-TYPE" 
    TCGA-05-4402     TCGA-05-4405     TCGA-05-4415     TCGA-05-4417 
"DBX2 WILD-TYPE" "DBX2 WILD-TYPE" "DBX2 WILD-TYPE" "DBX2 WILD-TYPE" 
    TCGA-05-4418     TCGA-05-4420     TCGA-05-4424     TCGA-05-4426 
"DBX2 WILD-TYPE" "DBX2 WILD-TYPE" "DBX2 WILD-TYPE" "DBX2 WILD-TYPE" 
    TCGA-05-4427     TCGA-05-4430     TCGA-05-4432     TCGA-05-4433 
"DBX2 WILD-TYPE" "DBX2 WILD-TYPE" "DBX2 WILD-TYPE" "DBX2 WILD-TYPE" 
    TCGA-05-4434     TCGA-05-5420     TCGA-05-5423     TCGA-05-5425 
"DBX2 WILD-TYPE" "DBX2 WILD-TYPE" "DBX2 WILD-TYPE" "DBX2 WILD-TYPE" 
    TCGA-05-5429     TCGA-05-5715     TCGA-35-3615     TCGA-35-4122 
"DBX2 WILD-TYPE" "DBX2 WILD-TYPE" "DBX2 WILD-TYPE" "DBX2 WILD-TYPE" 
    TCGA-35-4123     TCGA-35-5375     TCGA-38-4625     TCGA-38-4626 
"DBX2 WILD-TYPE" "DBX2 WILD-TYPE" "DBX2 WILD-TYPE" "DBX2 WILD-TYPE" 
    TCGA-38-4627     TCGA-38-4628     TCGA-38-4629     TCGA-38-4630 
"DBX2 WILD-TYPE" "DBX2 WILD-TYPE" "DBX2 WILD-TYPE" "DBX2 WILD-TYPE" 
    TCGA-38-4631     TCGA-38-4632     TCGA-38-6178     TCGA-44-2655 
"DBX2 WILD-TYPE" "DBX2 WILD-TYPE" "DBX2 WILD-TYPE" "DBX2 WILD-TYPE" 
    TCGA-44-2656     TCGA-44-2657     TCGA-44-2659     TCGA-44-2661 
"DBX2 WILD-TYPE" "DBX2 WILD-TYPE" "DBX2 WILD-TYPE" "DBX2 WILD-TYPE" 
    TCGA-44-2662     TCGA-44-2665     TCGA-44-2666     TCGA-44-2668 
"DBX2 WILD-TYPE" "DBX2 WILD-TYPE" "DBX2 WILD-TYPE" "DBX2 WILD-TYPE" 
    TCGA-44-3396     TCGA-44-3398     TCGA-44-3918     TCGA-44-3919 
"DBX2 WILD-TYPE" "DBX2 WILD-TYPE" "DBX2 WILD-TYPE" "DBX2 WILD-TYPE" 
    TCGA-44-4112     TCGA-44-5643     TCGA-44-5645     TCGA-44-6144 
"DBX2 WILD-TYPE" "DBX2 WILD-TYPE" "DBX2 WILD-TYPE" "DBX2 WILD-TYPE" 
    TCGA-44-6145     TCGA-44-6146     TCGA-44-6147     TCGA-44-6148 
"DBX2 WILD-TYPE" "DBX2 WILD-TYPE" "DBX2 WILD-TYPE" "DBX2 WILD-TYPE" 
    TCGA-44-6774     TCGA-44-6775     TCGA-44-6776     TCGA-44-6777 
"DBX2 WILD-TYPE" "DBX2 WILD-TYPE" "DBX2 WILD-TYPE"   "DBX2 MUTATED" 
    TCGA-44-6778     TCGA-44-6779     TCGA-49-4486     TCGA-49-4487 
"DBX2 WILD-TYPE" "DBX2 WILD-TYPE" "DBX2 WILD-TYPE" "DBX2 WILD-TYPE" 
    TCGA-49-4488     TCGA-49-4490     TCGA-49-4494     TCGA-49-4501 
"DBX2 WILD-TYPE" "DBX2 WILD-TYPE" "DBX2 WILD-TYPE" "DBX2 WILD-TYPE" 
    TCGA-49-4505     TCGA-49-4506     TCGA-49-4507     TCGA-49-4510 
"DBX2 WILD-TYPE" "DBX2 WILD-TYPE" "DBX2 WILD-TYPE" "DBX2 WILD-TYPE" 
    TCGA-49-4512     TCGA-49-4514     TCGA-49-6742     TCGA-49-6743 
"DBX2 WILD-TYPE" "DBX2 WILD-TYPE" "DBX2 WILD-TYPE" "DBX2 WILD-TYPE" 
    TCGA-49-6744     TCGA-49-6745     TCGA-50-5044     TCGA-50-5045 
"DBX2 WILD-TYPE" "DBX2 WILD-TYPE" "DBX2 WILD-TYPE" "DBX2 WILD-TYPE" 
    TCGA-50-5049     TCGA-50-5051     TCGA-50-5055     TCGA-50-5066 
"DBX2 WILD-TYPE" "DBX2 WILD-TYPE" "DBX2 WILD-TYPE" "DBX2 WILD-TYPE" 
    TCGA-50-5068     TCGA-50-5072     TCGA-50-5930     TCGA-50-5931 
"DBX2 WILD-TYPE" "DBX2 WILD-TYPE" "DBX2 WILD-TYPE" "DBX2 WILD-TYPE" 
    TCGA-50-5932     TCGA-50-5933     TCGA-50-5935     TCGA-50-5936 
"DBX2 WILD-TYPE" "DBX2 WILD-TYPE" "DBX2 WILD-TYPE" "DBX2 WILD-TYPE" 
    TCGA-50-5939     TCGA-50-5941     TCGA-50-5942     TCGA-50-5944 
"DBX2 WILD-TYPE" "DBX2 WILD-TYPE" "DBX2 WILD-TYPE" "DBX2 WILD-TYPE" 
    TCGA-50-5946     TCGA-50-6590     TCGA-50-6591     TCGA-50-6592 
"DBX2 WILD-TYPE" "DBX2 WILD-TYPE" "DBX2 WILD-TYPE" "DBX2 WILD-TYPE" 
    TCGA-50-6593     TCGA-50-6594     TCGA-50-6595     TCGA-50-6597 
"DBX2 WILD-TYPE" "DBX2 WILD-TYPE" "DBX2 WILD-TYPE" "DBX2 WILD-TYPE" 
    TCGA-55-1592     TCGA-55-1594     TCGA-55-1595     TCGA-55-1596 
  "DBX2 MUTATED" "DBX2 WILD-TYPE" "DBX2 WILD-TYPE" "DBX2 WILD-TYPE" 
    TCGA-55-5899     TCGA-55-6543     TCGA-55-6642     TCGA-55-6712 
"DBX2 WILD-TYPE" "DBX2 WILD-TYPE" "DBX2 WILD-TYPE" "DBX2 WILD-TYPE" 
    TCGA-64-1676     TCGA-64-1677     TCGA-64-1678     TCGA-64-1680 
"DBX2 WILD-TYPE" "DBX2 WILD-TYPE" "DBX2 WILD-TYPE" "DBX2 WILD-TYPE" 
    TCGA-64-5774     TCGA-64-5775     TCGA-64-5778     TCGA-64-5779 
"DBX2 WILD-TYPE" "DBX2 WILD-TYPE" "DBX2 WILD-TYPE" "DBX2 WILD-TYPE" 
    TCGA-64-5781     TCGA-64-5815     TCGA-67-3770     TCGA-67-3771 
"DBX2 WILD-TYPE" "DBX2 WILD-TYPE" "DBX2 WILD-TYPE"   "DBX2 MUTATED" 
    TCGA-67-3772     TCGA-67-3773     TCGA-67-3774     TCGA-67-6215 
"DBX2 WILD-TYPE" "DBX2 WILD-TYPE" "DBX2 WILD-TYPE" "DBX2 WILD-TYPE" 
    TCGA-67-6216     TCGA-67-6217     TCGA-71-6725     TCGA-73-4658 
"DBX2 WILD-TYPE" "DBX2 WILD-TYPE" "DBX2 WILD-TYPE" "DBX2 WILD-TYPE" 
    TCGA-73-4659     TCGA-73-4662     TCGA-73-4666     TCGA-73-4668 
"DBX2 WILD-TYPE" "DBX2 WILD-TYPE" "DBX2 WILD-TYPE" "DBX2 WILD-TYPE" 
    TCGA-73-4670     TCGA-73-4675     TCGA-73-4676     TCGA-73-4677 
"DBX2 WILD-TYPE" "DBX2 WILD-TYPE" "DBX2 WILD-TYPE" "DBX2 WILD-TYPE" 
    TCGA-91-6828     TCGA-91-6829     TCGA-91-6831     TCGA-91-6835 
"DBX2 WILD-TYPE" "DBX2 WILD-TYPE" "DBX2 WILD-TYPE" "DBX2 WILD-TYPE" 
    TCGA-91-6836 
"DBX2 WILD-TYPE" 
[1] "hr=" "1.4"
D242V2, continuous
D242V3, binary
[1] "tbl2"
                cls
clus             [,1] [,2]
  DBX2 MUTATED      3    1
  DBX2 WILD-TYPE   90   78
        clus
vv       DBX2 MUTATED DBX2 WILD-TYPE
  FEMALE            3             90
  MALE              1             78
D242V4, continuous
D242V5, multiclass
D242V6, multiclass
    clus
vv   DBX2 MUTATED DBX2 WILD-TYPE
  T1            1             40
  T2            3            105
  T3            0             14
  T4            0              8
D242V7, multiclass
       clus
vv      DBX2 MUTATED DBX2 WILD-TYPE
  N0               3             92
  N1               0             37
  N2+N3            0             35
D242V8, multiclass
    clus
vv   DBX2 MUTATED DBX2 WILD-TYPE
  M0            3            134
  M1            0              9
  MX            1             21
D242V9, multiclass
     clus
vv    DBX2 MUTATED DBX2 WILD-TYPE
  I              4             84
  II             0             33
  III            0             39
  IV             0              9
D242V10, binary
[1] "tbl2"
                cls
clus             [,1] [,2]
  DBX2 MUTATED      1    3
  DBX2 WILD-TYPE   15  153
     clus
vv    DBX2 MUTATED DBX2 WILD-TYPE
  NO             1             15
  YES            3            153
D242V11, continuous
[1] "Remove cluster labels:" "DBX2 MUTATED"          
clus
  DBX2 MUTATED DBX2 WILD-TYPE 
             2            112 
    TCGA-05-4244     TCGA-05-4249     TCGA-05-4250     TCGA-05-4382 
"DBX2 WILD-TYPE" "DBX2 WILD-TYPE" "DBX2 WILD-TYPE" "DBX2 WILD-TYPE" 
    TCGA-05-4384     TCGA-05-4389     TCGA-05-4395     TCGA-05-4396 
"DBX2 WILD-TYPE" "DBX2 WILD-TYPE" "DBX2 WILD-TYPE" "DBX2 WILD-TYPE" 
    TCGA-05-4397     TCGA-05-4398     TCGA-05-4402     TCGA-05-4405 
"DBX2 WILD-TYPE" "DBX2 WILD-TYPE" "DBX2 WILD-TYPE" "DBX2 WILD-TYPE" 
    TCGA-05-4410     TCGA-05-4415     TCGA-05-4417     TCGA-05-4418 
"DBX2 WILD-TYPE" "DBX2 WILD-TYPE" "DBX2 WILD-TYPE" "DBX2 WILD-TYPE" 
    TCGA-05-4420     TCGA-05-4422     TCGA-05-4424     TCGA-05-4425 
"DBX2 WILD-TYPE" "DBX2 WILD-TYPE" "DBX2 WILD-TYPE" "DBX2 WILD-TYPE" 
    TCGA-05-4426     TCGA-05-4427     TCGA-05-4430     TCGA-05-4432 
"DBX2 WILD-TYPE" "DBX2 WILD-TYPE" "DBX2 WILD-TYPE" "DBX2 WILD-TYPE" 
    TCGA-05-4433     TCGA-05-4434     TCGA-05-5420     TCGA-05-5423 
"DBX2 WILD-TYPE" "DBX2 WILD-TYPE" "DBX2 WILD-TYPE" "DBX2 WILD-TYPE" 
    TCGA-05-5425     TCGA-05-5428     TCGA-35-4122     TCGA-35-4123 
"DBX2 WILD-TYPE" "DBX2 WILD-TYPE" "DBX2 WILD-TYPE" "DBX2 WILD-TYPE" 
    TCGA-35-5375     TCGA-38-4625     TCGA-38-4626     TCGA-38-4629 
"DBX2 WILD-TYPE" "DBX2 WILD-TYPE" "DBX2 WILD-TYPE" "DBX2 WILD-TYPE" 
    TCGA-38-4631     TCGA-38-4632     TCGA-44-2655     TCGA-44-2656 
"DBX2 WILD-TYPE" "DBX2 WILD-TYPE" "DBX2 WILD-TYPE" "DBX2 WILD-TYPE" 
    TCGA-44-2657     TCGA-44-2659     TCGA-44-2662     TCGA-44-2666 
"DBX2 WILD-TYPE" "DBX2 WILD-TYPE" "DBX2 WILD-TYPE" "DBX2 WILD-TYPE" 
    TCGA-44-2668     TCGA-44-3396     TCGA-44-3398     TCGA-44-3918 
"DBX2 WILD-TYPE" "DBX2 WILD-TYPE" "DBX2 WILD-TYPE" "DBX2 WILD-TYPE" 
    TCGA-44-4112     TCGA-44-5643     TCGA-44-5645     TCGA-44-6144 
"DBX2 WILD-TYPE" "DBX2 WILD-TYPE" "DBX2 WILD-TYPE" "DBX2 WILD-TYPE" 
    TCGA-44-6145     TCGA-44-6146     TCGA-44-6148     TCGA-44-6774 
"DBX2 WILD-TYPE" "DBX2 WILD-TYPE" "DBX2 WILD-TYPE" "DBX2 WILD-TYPE" 
    TCGA-44-6775     TCGA-44-6776     TCGA-44-6778     TCGA-44-6779 
"DBX2 WILD-TYPE" "DBX2 WILD-TYPE" "DBX2 WILD-TYPE" "DBX2 WILD-TYPE" 
    TCGA-49-4486     TCGA-49-4487     TCGA-49-4490     TCGA-49-4494 
"DBX2 WILD-TYPE" "DBX2 WILD-TYPE" "DBX2 WILD-TYPE" "DBX2 WILD-TYPE" 
    TCGA-49-4505     TCGA-49-4506     TCGA-49-4507     TCGA-49-4510 
"DBX2 WILD-TYPE" "DBX2 WILD-TYPE" "DBX2 WILD-TYPE" "DBX2 WILD-TYPE" 
    TCGA-49-4514     TCGA-49-6742     TCGA-49-6743     TCGA-49-6744 
"DBX2 WILD-TYPE" "DBX2 WILD-TYPE" "DBX2 WILD-TYPE" "DBX2 WILD-TYPE" 
    TCGA-49-6745     TCGA-49-6767     TCGA-50-5051     TCGA-50-5072 
"DBX2 WILD-TYPE" "DBX2 WILD-TYPE" "DBX2 WILD-TYPE" "DBX2 WILD-TYPE" 
    TCGA-50-5931     TCGA-50-5939     TCGA-50-5941     TCGA-50-5942 
"DBX2 WILD-TYPE" "DBX2 WILD-TYPE" "DBX2 WILD-TYPE" "DBX2 WILD-TYPE" 
    TCGA-50-6590     TCGA-55-1596     TCGA-55-6543     TCGA-64-1676 
"DBX2 WILD-TYPE" "DBX2 WILD-TYPE" "DBX2 WILD-TYPE" "DBX2 WILD-TYPE" 
    TCGA-64-1677     TCGA-64-1678     TCGA-64-1680     TCGA-64-5774 
"DBX2 WILD-TYPE" "DBX2 WILD-TYPE" "DBX2 WILD-TYPE" "DBX2 WILD-TYPE" 
    TCGA-64-5775     TCGA-64-5778     TCGA-64-5779     TCGA-64-5781 
"DBX2 WILD-TYPE" "DBX2 WILD-TYPE" "DBX2 WILD-TYPE" "DBX2 WILD-TYPE" 
    TCGA-64-5815     TCGA-73-4658     TCGA-73-4659     TCGA-73-4662 
"DBX2 WILD-TYPE" "DBX2 WILD-TYPE" "DBX2 WILD-TYPE" "DBX2 WILD-TYPE" 
    TCGA-73-4666     TCGA-73-4668     TCGA-73-4670     TCGA-73-4675 
"DBX2 WILD-TYPE" "DBX2 WILD-TYPE" "DBX2 WILD-TYPE" "DBX2 WILD-TYPE" 
    TCGA-73-4676     TCGA-75-5122     TCGA-75-5125     TCGA-75-5126 
"DBX2 WILD-TYPE" "DBX2 WILD-TYPE" "DBX2 WILD-TYPE" "DBX2 WILD-TYPE" 
    TCGA-75-6203     TCGA-75-6206     TCGA-75-6207     TCGA-75-6211 
"DBX2 WILD-TYPE" "DBX2 WILD-TYPE" "DBX2 WILD-TYPE" "DBX2 WILD-TYPE" 
    TCGA-80-5611     TCGA-91-6829     TCGA-91-6835     TCGA-91-6836 
"DBX2 WILD-TYPE" "DBX2 WILD-TYPE" "DBX2 WILD-TYPE" "DBX2 WILD-TYPE" 
D242V12, continuous
D242V13, multiclass
                                             clus
vv                                            DBX2 MUTATED DBX2 WILD-TYPE
  CURRENT REFORMED SMOKER FOR < OR = 15 YEARS            4             58
  CURRENT REFORMED SMOKER FOR > 15 YEARS                 0             46
  CURRENT SMOKER                                         0             28
  LIFELONG NON-SMOKER                                    0             24
D242V14, continuous

Clustering(243) Variable = ZNF804B MUTATION ANALYSIS
D243V1, survival
                   sevent
clus2                0  1
  ZNF804B MUTATED   10  9
  ZNF804B WILD-TYPE 89 41
  ZNF804B MUTATED ZNF804B WILD-TYPE 
               19               130 
  ZNF804B MUTATED ZNF804B WILD-TYPE 
                9                41 
$`ZNF804B MUTATED`
TCGA-05-4250 TCGA-05-4396 TCGA-05-4415 TCGA-05-4427 TCGA-05-4432 TCGA-38-4628 
        3.98         9.96         2.96        26.01        25.02        49.02 
TCGA-38-4630 TCGA-44-2656 TCGA-44-3918 TCGA-44-5643 TCGA-49-4487 TCGA-49-4494 
       35.28        19.10         6.44         3.48        28.11        35.54 
TCGA-49-6742 TCGA-49-6743 TCGA-50-5049 TCGA-50-5936 TCGA-50-6590 TCGA-64-1676 
       15.02        12.13        48.82         8.45        42.31        56.81 
TCGA-73-4670 
        0.46 

$`ZNF804B WILD-TYPE`
TCGA-05-4249 TCGA-05-4382 TCGA-05-4384 TCGA-05-4390 TCGA-05-4397 TCGA-05-4398 
       38.07        19.92        14.01        37.02        24.03        47.05 
TCGA-05-4402 TCGA-05-4405 TCGA-05-4417 TCGA-05-4418 TCGA-05-4420 TCGA-05-4424 
        8.02        20.05        14.93         8.98        29.95        30.02 
TCGA-05-4426 TCGA-05-4430 TCGA-05-4433 TCGA-05-4434 TCGA-05-5420 TCGA-05-5423 
       26.01        25.02        24.00        15.02         1.02         4.96 
TCGA-05-5425 TCGA-05-5429 TCGA-05-5715 TCGA-35-3615 TCGA-35-4122 TCGA-35-4123 
        2.96         0.99         2.04         0.46         7.36         5.95 
TCGA-35-5375 TCGA-38-4625 TCGA-38-4626 TCGA-38-4627 TCGA-38-4629 TCGA-38-4631 
        8.68        47.61        85.32        37.71        28.37        11.64 
TCGA-38-4632 TCGA-38-6178 TCGA-44-2655 TCGA-44-2657 TCGA-44-2659 TCGA-44-2661 
       44.61         5.19        18.87        13.15        17.39         3.39 
TCGA-44-2662 TCGA-44-2665 TCGA-44-2666 TCGA-44-2668 TCGA-44-3396 TCGA-44-3398 
       15.78        13.15         3.19         8.09        10.22         8.32 
TCGA-44-3919 TCGA-44-4112 TCGA-44-5645 TCGA-44-6144 TCGA-44-6145 TCGA-44-6146 
        6.21         4.60         6.84         0.30         3.35         9.93 
TCGA-44-6147 TCGA-44-6148 TCGA-44-6774 TCGA-44-6775 TCGA-44-6776 TCGA-44-6777 
        7.76         3.12         5.42         2.70        63.72        32.45 
TCGA-44-6778 TCGA-44-6779 TCGA-49-4486 TCGA-49-4488 TCGA-49-4490 TCGA-49-4501 
       36.49        16.41        76.21        28.57        12.66        46.72 
TCGA-49-4505 TCGA-49-4506 TCGA-49-4507 TCGA-49-4510 TCGA-49-4512 TCGA-49-4514 
       14.07        32.84         8.81        29.46        29.75        43.20 
TCGA-49-6744 TCGA-49-6745 TCGA-50-5044 TCGA-50-5045 TCGA-50-5051 TCGA-50-5055 
       12.99         4.93        20.48        71.47        14.96        25.81 
TCGA-50-5066 TCGA-50-5068 TCGA-50-5072 TCGA-50-5930 TCGA-50-5931 TCGA-50-5932 
        9.76        49.28         8.05         9.27         8.78        35.87 
TCGA-50-5933 TCGA-50-5935 TCGA-50-5939 TCGA-50-5941 TCGA-50-5942 TCGA-50-5944 
       77.88        21.47        15.12         9.37         4.44        12.26 
TCGA-50-5946 TCGA-50-6591 TCGA-50-6592 TCGA-50-6593 TCGA-50-6594 TCGA-50-6595 
       11.47         3.88        25.51        11.05        12.16         6.21 
TCGA-50-6597 TCGA-55-1592 TCGA-55-1594 TCGA-55-1595 TCGA-55-1596 TCGA-55-5899 
       33.37        23.05        38.73        48.62        45.17         2.86 
TCGA-55-6543 TCGA-55-6642 TCGA-55-6712 TCGA-64-1677 TCGA-64-1678 TCGA-64-1680 
        0.07        32.61         0.79        20.65        39.09        37.02 
TCGA-64-5774 TCGA-64-5775 TCGA-64-5778 TCGA-64-5779 TCGA-64-5781 TCGA-64-5815 
       83.84         0.10        30.44        16.67        39.52         7.33 
TCGA-67-3770 TCGA-67-3771 TCGA-67-3772 TCGA-67-3773 TCGA-67-3774 TCGA-67-6215 
        0.99         1.97         0.59         2.04         0.59         0.89 
TCGA-67-6216 TCGA-67-6217 TCGA-71-6725 TCGA-73-4658 TCGA-73-4659 TCGA-73-4662 
        0.69        13.87         2.01        52.57        23.38        29.95 
TCGA-73-4666 TCGA-73-4668 TCGA-73-4675 TCGA-73-4676 TCGA-73-4677 TCGA-91-6828 
       20.28        15.35         1.32         4.01         1.25         1.22 
TCGA-91-6829 TCGA-91-6831 TCGA-91-6835 TCGA-91-6836 
       41.33         1.28         1.15         0.36 

  ZNF804B MUTATED ZNF804B WILD-TYPE 
             0.46              0.07 
  ZNF804B MUTATED ZNF804B WILD-TYPE 
            56.81             85.32 
  ZNF804B MUTATED ZNF804B WILD-TYPE 
            19.10             13.15 
[1] "0.5 - 56.8 (19.1)" "0.1 - 85.3 (13.2)"
       TCGA-05-4249        TCGA-05-4250        TCGA-05-4382        TCGA-05-4384 
"ZNF804B WILD-TYPE"   "ZNF804B MUTATED" "ZNF804B WILD-TYPE" "ZNF804B WILD-TYPE" 
       TCGA-05-4390        TCGA-05-4396        TCGA-05-4397        TCGA-05-4398 
"ZNF804B WILD-TYPE"   "ZNF804B MUTATED" "ZNF804B WILD-TYPE" "ZNF804B WILD-TYPE" 
       TCGA-05-4402        TCGA-05-4405        TCGA-05-4415        TCGA-05-4417 
"ZNF804B WILD-TYPE" "ZNF804B WILD-TYPE"   "ZNF804B MUTATED" "ZNF804B WILD-TYPE" 
       TCGA-05-4418        TCGA-05-4420        TCGA-05-4424        TCGA-05-4426 
"ZNF804B WILD-TYPE" "ZNF804B WILD-TYPE" "ZNF804B WILD-TYPE" "ZNF804B WILD-TYPE" 
       TCGA-05-4427        TCGA-05-4430        TCGA-05-4432        TCGA-05-4433 
  "ZNF804B MUTATED" "ZNF804B WILD-TYPE"   "ZNF804B MUTATED" "ZNF804B WILD-TYPE" 
       TCGA-05-4434        TCGA-05-5420        TCGA-05-5423        TCGA-05-5425 
"ZNF804B WILD-TYPE" "ZNF804B WILD-TYPE" "ZNF804B WILD-TYPE" "ZNF804B WILD-TYPE" 
       TCGA-05-5429        TCGA-05-5715        TCGA-35-3615        TCGA-35-4122 
"ZNF804B WILD-TYPE" "ZNF804B WILD-TYPE" "ZNF804B WILD-TYPE" "ZNF804B WILD-TYPE" 
       TCGA-35-4123        TCGA-35-5375        TCGA-38-4625        TCGA-38-4626 
"ZNF804B WILD-TYPE" "ZNF804B WILD-TYPE" "ZNF804B WILD-TYPE" "ZNF804B WILD-TYPE" 
       TCGA-38-4627        TCGA-38-4628        TCGA-38-4629        TCGA-38-4630 
"ZNF804B WILD-TYPE"   "ZNF804B MUTATED" "ZNF804B WILD-TYPE"   "ZNF804B MUTATED" 
       TCGA-38-4631        TCGA-38-4632        TCGA-38-6178        TCGA-44-2655 
"ZNF804B WILD-TYPE" "ZNF804B WILD-TYPE" "ZNF804B WILD-TYPE" "ZNF804B WILD-TYPE" 
       TCGA-44-2656        TCGA-44-2657        TCGA-44-2659        TCGA-44-2661 
  "ZNF804B MUTATED" "ZNF804B WILD-TYPE" "ZNF804B WILD-TYPE" "ZNF804B WILD-TYPE" 
       TCGA-44-2662        TCGA-44-2665        TCGA-44-2666        TCGA-44-2668 
"ZNF804B WILD-TYPE" "ZNF804B WILD-TYPE" "ZNF804B WILD-TYPE" "ZNF804B WILD-TYPE" 
       TCGA-44-3396        TCGA-44-3398        TCGA-44-3918        TCGA-44-3919 
"ZNF804B WILD-TYPE" "ZNF804B WILD-TYPE"   "ZNF804B MUTATED" "ZNF804B WILD-TYPE" 
       TCGA-44-4112        TCGA-44-5643        TCGA-44-5645        TCGA-44-6144 
"ZNF804B WILD-TYPE"   "ZNF804B MUTATED" "ZNF804B WILD-TYPE" "ZNF804B WILD-TYPE" 
       TCGA-44-6145        TCGA-44-6146        TCGA-44-6147        TCGA-44-6148 
"ZNF804B WILD-TYPE" "ZNF804B WILD-TYPE" "ZNF804B WILD-TYPE" "ZNF804B WILD-TYPE" 
       TCGA-44-6774        TCGA-44-6775        TCGA-44-6776        TCGA-44-6777 
"ZNF804B WILD-TYPE" "ZNF804B WILD-TYPE" "ZNF804B WILD-TYPE" "ZNF804B WILD-TYPE" 
       TCGA-44-6778        TCGA-44-6779        TCGA-49-4486        TCGA-49-4487 
"ZNF804B WILD-TYPE" "ZNF804B WILD-TYPE" "ZNF804B WILD-TYPE"   "ZNF804B MUTATED" 
       TCGA-49-4488        TCGA-49-4490        TCGA-49-4494        TCGA-49-4501 
"ZNF804B WILD-TYPE" "ZNF804B WILD-TYPE"   "ZNF804B MUTATED" "ZNF804B WILD-TYPE" 
       TCGA-49-4505        TCGA-49-4506        TCGA-49-4507        TCGA-49-4510 
"ZNF804B WILD-TYPE" "ZNF804B WILD-TYPE" "ZNF804B WILD-TYPE" "ZNF804B WILD-TYPE" 
       TCGA-49-4512        TCGA-49-4514        TCGA-49-6742        TCGA-49-6743 
"ZNF804B WILD-TYPE" "ZNF804B WILD-TYPE"   "ZNF804B MUTATED"   "ZNF804B MUTATED" 
       TCGA-49-6744        TCGA-49-6745        TCGA-50-5044        TCGA-50-5045 
"ZNF804B WILD-TYPE" "ZNF804B WILD-TYPE" "ZNF804B WILD-TYPE" "ZNF804B WILD-TYPE" 
       TCGA-50-5049        TCGA-50-5051        TCGA-50-5055        TCGA-50-5066 
  "ZNF804B MUTATED" "ZNF804B WILD-TYPE" "ZNF804B WILD-TYPE" "ZNF804B WILD-TYPE" 
       TCGA-50-5068        TCGA-50-5072        TCGA-50-5930        TCGA-50-5931 
"ZNF804B WILD-TYPE" "ZNF804B WILD-TYPE" "ZNF804B WILD-TYPE" "ZNF804B WILD-TYPE" 
       TCGA-50-5932        TCGA-50-5933        TCGA-50-5935        TCGA-50-5936 
"ZNF804B WILD-TYPE" "ZNF804B WILD-TYPE" "ZNF804B WILD-TYPE"   "ZNF804B MUTATED" 
       TCGA-50-5939        TCGA-50-5941        TCGA-50-5942        TCGA-50-5944 
"ZNF804B WILD-TYPE" "ZNF804B WILD-TYPE" "ZNF804B WILD-TYPE" "ZNF804B WILD-TYPE" 
       TCGA-50-5946        TCGA-50-6590        TCGA-50-6591        TCGA-50-6592 
"ZNF804B WILD-TYPE"   "ZNF804B MUTATED" "ZNF804B WILD-TYPE" "ZNF804B WILD-TYPE" 
       TCGA-50-6593        TCGA-50-6594        TCGA-50-6595        TCGA-50-6597 
"ZNF804B WILD-TYPE" "ZNF804B WILD-TYPE" "ZNF804B WILD-TYPE" "ZNF804B WILD-TYPE" 
       TCGA-55-1592        TCGA-55-1594        TCGA-55-1595        TCGA-55-1596 
"ZNF804B WILD-TYPE" "ZNF804B WILD-TYPE" "ZNF804B WILD-TYPE" "ZNF804B WILD-TYPE" 
       TCGA-55-5899        TCGA-55-6543        TCGA-55-6642        TCGA-55-6712 
"ZNF804B WILD-TYPE" "ZNF804B WILD-TYPE" "ZNF804B WILD-TYPE" "ZNF804B WILD-TYPE" 
       TCGA-64-1676        TCGA-64-1677        TCGA-64-1678        TCGA-64-1680 
  "ZNF804B MUTATED" "ZNF804B WILD-TYPE" "ZNF804B WILD-TYPE" "ZNF804B WILD-TYPE" 
       TCGA-64-5774        TCGA-64-5775        TCGA-64-5778        TCGA-64-5779 
"ZNF804B WILD-TYPE" "ZNF804B WILD-TYPE" "ZNF804B WILD-TYPE" "ZNF804B WILD-TYPE" 
       TCGA-64-5781        TCGA-64-5815        TCGA-67-3770        TCGA-67-3771 
"ZNF804B WILD-TYPE" "ZNF804B WILD-TYPE" "ZNF804B WILD-TYPE" "ZNF804B WILD-TYPE" 
       TCGA-67-3772        TCGA-67-3773        TCGA-67-3774        TCGA-67-6215 
"ZNF804B WILD-TYPE" "ZNF804B WILD-TYPE" "ZNF804B WILD-TYPE" "ZNF804B WILD-TYPE" 
       TCGA-67-6216        TCGA-67-6217        TCGA-71-6725        TCGA-73-4658 
"ZNF804B WILD-TYPE" "ZNF804B WILD-TYPE" "ZNF804B WILD-TYPE" "ZNF804B WILD-TYPE" 
       TCGA-73-4659        TCGA-73-4662        TCGA-73-4666        TCGA-73-4668 
"ZNF804B WILD-TYPE" "ZNF804B WILD-TYPE" "ZNF804B WILD-TYPE" "ZNF804B WILD-TYPE" 
       TCGA-73-4670        TCGA-73-4675        TCGA-73-4676        TCGA-73-4677 
  "ZNF804B MUTATED" "ZNF804B WILD-TYPE" "ZNF804B WILD-TYPE" "ZNF804B WILD-TYPE" 
       TCGA-91-6828        TCGA-91-6829        TCGA-91-6831        TCGA-91-6835 
"ZNF804B WILD-TYPE" "ZNF804B WILD-TYPE" "ZNF804B WILD-TYPE" "ZNF804B WILD-TYPE" 
       TCGA-91-6836 
"ZNF804B WILD-TYPE" 
       TCGA-05-4249        TCGA-05-4250        TCGA-05-4382        TCGA-05-4384 
"ZNF804B WILD-TYPE"   "ZNF804B MUTATED" "ZNF804B WILD-TYPE" "ZNF804B WILD-TYPE" 
       TCGA-05-4390        TCGA-05-4396        TCGA-05-4397        TCGA-05-4398 
"ZNF804B WILD-TYPE"   "ZNF804B MUTATED" "ZNF804B WILD-TYPE" "ZNF804B WILD-TYPE" 
       TCGA-05-4402        TCGA-05-4405        TCGA-05-4415        TCGA-05-4417 
"ZNF804B WILD-TYPE" "ZNF804B WILD-TYPE"   "ZNF804B MUTATED" "ZNF804B WILD-TYPE" 
       TCGA-05-4418        TCGA-05-4420        TCGA-05-4424        TCGA-05-4426 
"ZNF804B WILD-TYPE" "ZNF804B WILD-TYPE" "ZNF804B WILD-TYPE" "ZNF804B WILD-TYPE" 
       TCGA-05-4427        TCGA-05-4430        TCGA-05-4432        TCGA-05-4433 
  "ZNF804B MUTATED" "ZNF804B WILD-TYPE"   "ZNF804B MUTATED" "ZNF804B WILD-TYPE" 
       TCGA-05-4434        TCGA-05-5420        TCGA-05-5423        TCGA-05-5425 
"ZNF804B WILD-TYPE" "ZNF804B WILD-TYPE" "ZNF804B WILD-TYPE" "ZNF804B WILD-TYPE" 
       TCGA-05-5429        TCGA-05-5715        TCGA-35-3615        TCGA-35-4122 
"ZNF804B WILD-TYPE" "ZNF804B WILD-TYPE" "ZNF804B WILD-TYPE" "ZNF804B WILD-TYPE" 
       TCGA-35-4123        TCGA-35-5375        TCGA-38-4625        TCGA-38-4626 
"ZNF804B WILD-TYPE" "ZNF804B WILD-TYPE" "ZNF804B WILD-TYPE" "ZNF804B WILD-TYPE" 
       TCGA-38-4627        TCGA-38-4628        TCGA-38-4629        TCGA-38-4630 
"ZNF804B WILD-TYPE"   "ZNF804B MUTATED" "ZNF804B WILD-TYPE"   "ZNF804B MUTATED" 
       TCGA-38-4631        TCGA-38-4632        TCGA-38-6178        TCGA-44-2655 
"ZNF804B WILD-TYPE" "ZNF804B WILD-TYPE" "ZNF804B WILD-TYPE" "ZNF804B WILD-TYPE" 
       TCGA-44-2656        TCGA-44-2657        TCGA-44-2659        TCGA-44-2661 
  "ZNF804B MUTATED" "ZNF804B WILD-TYPE" "ZNF804B WILD-TYPE" "ZNF804B WILD-TYPE" 
       TCGA-44-2662        TCGA-44-2665        TCGA-44-2666        TCGA-44-2668 
"ZNF804B WILD-TYPE" "ZNF804B WILD-TYPE" "ZNF804B WILD-TYPE" "ZNF804B WILD-TYPE" 
       TCGA-44-3396        TCGA-44-3398        TCGA-44-3918        TCGA-44-3919 
"ZNF804B WILD-TYPE" "ZNF804B WILD-TYPE"   "ZNF804B MUTATED" "ZNF804B WILD-TYPE" 
       TCGA-44-4112        TCGA-44-5643        TCGA-44-5645        TCGA-44-6144 
"ZNF804B WILD-TYPE"   "ZNF804B MUTATED" "ZNF804B WILD-TYPE" "ZNF804B WILD-TYPE" 
       TCGA-44-6145        TCGA-44-6146        TCGA-44-6147        TCGA-44-6148 
"ZNF804B WILD-TYPE" "ZNF804B WILD-TYPE" "ZNF804B WILD-TYPE" "ZNF804B WILD-TYPE" 
       TCGA-44-6774        TCGA-44-6775        TCGA-44-6776        TCGA-44-6777 
"ZNF804B WILD-TYPE" "ZNF804B WILD-TYPE" "ZNF804B WILD-TYPE" "ZNF804B WILD-TYPE" 
       TCGA-44-6778        TCGA-44-6779        TCGA-49-4486        TCGA-49-4487 
"ZNF804B WILD-TYPE" "ZNF804B WILD-TYPE" "ZNF804B WILD-TYPE"   "ZNF804B MUTATED" 
       TCGA-49-4488        TCGA-49-4490        TCGA-49-4494        TCGA-49-4501 
"ZNF804B WILD-TYPE" "ZNF804B WILD-TYPE"   "ZNF804B MUTATED" "ZNF804B WILD-TYPE" 
       TCGA-49-4505        TCGA-49-4506        TCGA-49-4507        TCGA-49-4510 
"ZNF804B WILD-TYPE" "ZNF804B WILD-TYPE" "ZNF804B WILD-TYPE" "ZNF804B WILD-TYPE" 
       TCGA-49-4512        TCGA-49-4514        TCGA-49-6742        TCGA-49-6743 
"ZNF804B WILD-TYPE" "ZNF804B WILD-TYPE"   "ZNF804B MUTATED"   "ZNF804B MUTATED" 
       TCGA-49-6744        TCGA-49-6745        TCGA-50-5044        TCGA-50-5045 
"ZNF804B WILD-TYPE" "ZNF804B WILD-TYPE" "ZNF804B WILD-TYPE" "ZNF804B WILD-TYPE" 
       TCGA-50-5049        TCGA-50-5051        TCGA-50-5055        TCGA-50-5066 
  "ZNF804B MUTATED" "ZNF804B WILD-TYPE" "ZNF804B WILD-TYPE" "ZNF804B WILD-TYPE" 
       TCGA-50-5068        TCGA-50-5072        TCGA-50-5930        TCGA-50-5931 
"ZNF804B WILD-TYPE" "ZNF804B WILD-TYPE" "ZNF804B WILD-TYPE" "ZNF804B WILD-TYPE" 
       TCGA-50-5932        TCGA-50-5933        TCGA-50-5935        TCGA-50-5936 
"ZNF804B WILD-TYPE" "ZNF804B WILD-TYPE" "ZNF804B WILD-TYPE"   "ZNF804B MUTATED" 
       TCGA-50-5939        TCGA-50-5941        TCGA-50-5942        TCGA-50-5944 
"ZNF804B WILD-TYPE" "ZNF804B WILD-TYPE" "ZNF804B WILD-TYPE" "ZNF804B WILD-TYPE" 
       TCGA-50-5946        TCGA-50-6590        TCGA-50-6591        TCGA-50-6592 
"ZNF804B WILD-TYPE"   "ZNF804B MUTATED" "ZNF804B WILD-TYPE" "ZNF804B WILD-TYPE" 
       TCGA-50-6593        TCGA-50-6594        TCGA-50-6595        TCGA-50-6597 
"ZNF804B WILD-TYPE" "ZNF804B WILD-TYPE" "ZNF804B WILD-TYPE" "ZNF804B WILD-TYPE" 
       TCGA-55-1592        TCGA-55-1594        TCGA-55-1595        TCGA-55-1596 
"ZNF804B WILD-TYPE" "ZNF804B WILD-TYPE" "ZNF804B WILD-TYPE" "ZNF804B WILD-TYPE" 
       TCGA-55-5899        TCGA-55-6543        TCGA-55-6642        TCGA-55-6712 
"ZNF804B WILD-TYPE" "ZNF804B WILD-TYPE" "ZNF804B WILD-TYPE" "ZNF804B WILD-TYPE" 
       TCGA-64-1676        TCGA-64-1677        TCGA-64-1678        TCGA-64-1680 
  "ZNF804B MUTATED" "ZNF804B WILD-TYPE" "ZNF804B WILD-TYPE" "ZNF804B WILD-TYPE" 
       TCGA-64-5774        TCGA-64-5775        TCGA-64-5778        TCGA-64-5779 
"ZNF804B WILD-TYPE" "ZNF804B WILD-TYPE" "ZNF804B WILD-TYPE" "ZNF804B WILD-TYPE" 
       TCGA-64-5781        TCGA-64-5815        TCGA-67-3770        TCGA-67-3771 
"ZNF804B WILD-TYPE" "ZNF804B WILD-TYPE" "ZNF804B WILD-TYPE" "ZNF804B WILD-TYPE" 
       TCGA-67-3772        TCGA-67-3773        TCGA-67-3774        TCGA-67-6215 
"ZNF804B WILD-TYPE" "ZNF804B WILD-TYPE" "ZNF804B WILD-TYPE" "ZNF804B WILD-TYPE" 
       TCGA-67-6216        TCGA-67-6217        TCGA-71-6725        TCGA-73-4658 
"ZNF804B WILD-TYPE" "ZNF804B WILD-TYPE" "ZNF804B WILD-TYPE" "ZNF804B WILD-TYPE" 
       TCGA-73-4659        TCGA-73-4662        TCGA-73-4666        TCGA-73-4668 
"ZNF804B WILD-TYPE" "ZNF804B WILD-TYPE" "ZNF804B WILD-TYPE" "ZNF804B WILD-TYPE" 
       TCGA-73-4670        TCGA-73-4675        TCGA-73-4676        TCGA-73-4677 
  "ZNF804B MUTATED" "ZNF804B WILD-TYPE" "ZNF804B WILD-TYPE" "ZNF804B WILD-TYPE" 
       TCGA-91-6828        TCGA-91-6829        TCGA-91-6831        TCGA-91-6835 
"ZNF804B WILD-TYPE" "ZNF804B WILD-TYPE" "ZNF804B WILD-TYPE" "ZNF804B WILD-TYPE" 
       TCGA-91-6836 
"ZNF804B WILD-TYPE" 
       TCGA-05-4249        TCGA-05-4250        TCGA-05-4382        TCGA-05-4384 
"ZNF804B WILD-TYPE"   "ZNF804B MUTATED" "ZNF804B WILD-TYPE" "ZNF804B WILD-TYPE" 
       TCGA-05-4390        TCGA-05-4396        TCGA-05-4397        TCGA-05-4398 
"ZNF804B WILD-TYPE"   "ZNF804B MUTATED" "ZNF804B WILD-TYPE" "ZNF804B WILD-TYPE" 
       TCGA-05-4402        TCGA-05-4405        TCGA-05-4415        TCGA-05-4417 
"ZNF804B WILD-TYPE" "ZNF804B WILD-TYPE"   "ZNF804B MUTATED" "ZNF804B WILD-TYPE" 
       TCGA-05-4418        TCGA-05-4420        TCGA-05-4424        TCGA-05-4426 
"ZNF804B WILD-TYPE" "ZNF804B WILD-TYPE" "ZNF804B WILD-TYPE" "ZNF804B WILD-TYPE" 
       TCGA-05-4427        TCGA-05-4430        TCGA-05-4432        TCGA-05-4433 
  "ZNF804B MUTATED" "ZNF804B WILD-TYPE"   "ZNF804B MUTATED" "ZNF804B WILD-TYPE" 
       TCGA-05-4434        TCGA-05-5420        TCGA-05-5423        TCGA-05-5425 
"ZNF804B WILD-TYPE" "ZNF804B WILD-TYPE" "ZNF804B WILD-TYPE" "ZNF804B WILD-TYPE" 
       TCGA-05-5429        TCGA-05-5715        TCGA-35-3615        TCGA-35-4122 
"ZNF804B WILD-TYPE" "ZNF804B WILD-TYPE" "ZNF804B WILD-TYPE" "ZNF804B WILD-TYPE" 
       TCGA-35-4123        TCGA-35-5375        TCGA-38-4625        TCGA-38-4626 
"ZNF804B WILD-TYPE" "ZNF804B WILD-TYPE" "ZNF804B WILD-TYPE" "ZNF804B WILD-TYPE" 
       TCGA-38-4627        TCGA-38-4628        TCGA-38-4629        TCGA-38-4630 
"ZNF804B WILD-TYPE"   "ZNF804B MUTATED" "ZNF804B WILD-TYPE"   "ZNF804B MUTATED" 
       TCGA-38-4631        TCGA-38-4632        TCGA-38-6178        TCGA-44-2655 
"ZNF804B WILD-TYPE" "ZNF804B WILD-TYPE" "ZNF804B WILD-TYPE" "ZNF804B WILD-TYPE" 
       TCGA-44-2656        TCGA-44-2657        TCGA-44-2659        TCGA-44-2661 
  "ZNF804B MUTATED" "ZNF804B WILD-TYPE" "ZNF804B WILD-TYPE" "ZNF804B WILD-TYPE" 
       TCGA-44-2662        TCGA-44-2665        TCGA-44-2666        TCGA-44-2668 
"ZNF804B WILD-TYPE" "ZNF804B WILD-TYPE" "ZNF804B WILD-TYPE" "ZNF804B WILD-TYPE" 
       TCGA-44-3396        TCGA-44-3398        TCGA-44-3918        TCGA-44-3919 
"ZNF804B WILD-TYPE" "ZNF804B WILD-TYPE"   "ZNF804B MUTATED" "ZNF804B WILD-TYPE" 
       TCGA-44-4112        TCGA-44-5643        TCGA-44-5645        TCGA-44-6144 
"ZNF804B WILD-TYPE"   "ZNF804B MUTATED" "ZNF804B WILD-TYPE" "ZNF804B WILD-TYPE" 
       TCGA-44-6145        TCGA-44-6146        TCGA-44-6147        TCGA-44-6148 
"ZNF804B WILD-TYPE" "ZNF804B WILD-TYPE" "ZNF804B WILD-TYPE" "ZNF804B WILD-TYPE" 
       TCGA-44-6774        TCGA-44-6775        TCGA-44-6776        TCGA-44-6777 
"ZNF804B WILD-TYPE" "ZNF804B WILD-TYPE" "ZNF804B WILD-TYPE" "ZNF804B WILD-TYPE" 
       TCGA-44-6778        TCGA-44-6779        TCGA-49-4486        TCGA-49-4487 
"ZNF804B WILD-TYPE" "ZNF804B WILD-TYPE" "ZNF804B WILD-TYPE"   "ZNF804B MUTATED" 
       TCGA-49-4488        TCGA-49-4490        TCGA-49-4494        TCGA-49-4501 
"ZNF804B WILD-TYPE" "ZNF804B WILD-TYPE"   "ZNF804B MUTATED" "ZNF804B WILD-TYPE" 
       TCGA-49-4505        TCGA-49-4506        TCGA-49-4507        TCGA-49-4510 
"ZNF804B WILD-TYPE" "ZNF804B WILD-TYPE" "ZNF804B WILD-TYPE" "ZNF804B WILD-TYPE" 
       TCGA-49-4512        TCGA-49-4514        TCGA-49-6742        TCGA-49-6743 
"ZNF804B WILD-TYPE" "ZNF804B WILD-TYPE"   "ZNF804B MUTATED"   "ZNF804B MUTATED" 
       TCGA-49-6744        TCGA-49-6745        TCGA-50-5044        TCGA-50-5045 
"ZNF804B WILD-TYPE" "ZNF804B WILD-TYPE" "ZNF804B WILD-TYPE" "ZNF804B WILD-TYPE" 
       TCGA-50-5049        TCGA-50-5051        TCGA-50-5055        TCGA-50-5066 
  "ZNF804B MUTATED" "ZNF804B WILD-TYPE" "ZNF804B WILD-TYPE" "ZNF804B WILD-TYPE" 
       TCGA-50-5068        TCGA-50-5072        TCGA-50-5930        TCGA-50-5931 
"ZNF804B WILD-TYPE" "ZNF804B WILD-TYPE" "ZNF804B WILD-TYPE" "ZNF804B WILD-TYPE" 
       TCGA-50-5932        TCGA-50-5933        TCGA-50-5935        TCGA-50-5936 
"ZNF804B WILD-TYPE" "ZNF804B WILD-TYPE" "ZNF804B WILD-TYPE"   "ZNF804B MUTATED" 
       TCGA-50-5939        TCGA-50-5941        TCGA-50-5942        TCGA-50-5944 
"ZNF804B WILD-TYPE" "ZNF804B WILD-TYPE" "ZNF804B WILD-TYPE" "ZNF804B WILD-TYPE" 
       TCGA-50-5946        TCGA-50-6590        TCGA-50-6591        TCGA-50-6592 
"ZNF804B WILD-TYPE"   "ZNF804B MUTATED" "ZNF804B WILD-TYPE" "ZNF804B WILD-TYPE" 
       TCGA-50-6593        TCGA-50-6594        TCGA-50-6595        TCGA-50-6597 
"ZNF804B WILD-TYPE" "ZNF804B WILD-TYPE" "ZNF804B WILD-TYPE" "ZNF804B WILD-TYPE" 
       TCGA-55-1592        TCGA-55-1594        TCGA-55-1595        TCGA-55-1596 
"ZNF804B WILD-TYPE" "ZNF804B WILD-TYPE" "ZNF804B WILD-TYPE" "ZNF804B WILD-TYPE" 
       TCGA-55-5899        TCGA-55-6543        TCGA-55-6642        TCGA-55-6712 
"ZNF804B WILD-TYPE" "ZNF804B WILD-TYPE" "ZNF804B WILD-TYPE" "ZNF804B WILD-TYPE" 
       TCGA-64-1676        TCGA-64-1677        TCGA-64-1678        TCGA-64-1680 
  "ZNF804B MUTATED" "ZNF804B WILD-TYPE" "ZNF804B WILD-TYPE" "ZNF804B WILD-TYPE" 
       TCGA-64-5774        TCGA-64-5775        TCGA-64-5778        TCGA-64-5779 
"ZNF804B WILD-TYPE" "ZNF804B WILD-TYPE" "ZNF804B WILD-TYPE" "ZNF804B WILD-TYPE" 
       TCGA-64-5781        TCGA-64-5815        TCGA-67-3770        TCGA-67-3771 
"ZNF804B WILD-TYPE" "ZNF804B WILD-TYPE" "ZNF804B WILD-TYPE" "ZNF804B WILD-TYPE" 
       TCGA-67-3772        TCGA-67-3773        TCGA-67-3774        TCGA-67-6215 
"ZNF804B WILD-TYPE" "ZNF804B WILD-TYPE" "ZNF804B WILD-TYPE" "ZNF804B WILD-TYPE" 
       TCGA-67-6216        TCGA-67-6217        TCGA-71-6725        TCGA-73-4658 
"ZNF804B WILD-TYPE" "ZNF804B WILD-TYPE" "ZNF804B WILD-TYPE" "ZNF804B WILD-TYPE" 
       TCGA-73-4659        TCGA-73-4662        TCGA-73-4666        TCGA-73-4668 
"ZNF804B WILD-TYPE" "ZNF804B WILD-TYPE" "ZNF804B WILD-TYPE" "ZNF804B WILD-TYPE" 
       TCGA-73-4670        TCGA-73-4675        TCGA-73-4676        TCGA-73-4677 
  "ZNF804B MUTATED" "ZNF804B WILD-TYPE" "ZNF804B WILD-TYPE" "ZNF804B WILD-TYPE" 
       TCGA-91-6828        TCGA-91-6829        TCGA-91-6831        TCGA-91-6835 
"ZNF804B WILD-TYPE" "ZNF804B WILD-TYPE" "ZNF804B WILD-TYPE" "ZNF804B WILD-TYPE" 
       TCGA-91-6836 
"ZNF804B WILD-TYPE" 
[1] "hr=" "1.3"
D243V2, continuous
D243V3, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  ZNF804B MUTATED      9   11
  ZNF804B WILD-TYPE   84   68
        clus
vv       ZNF804B MUTATED ZNF804B WILD-TYPE
  FEMALE               9                84
  MALE                11                68
D243V4, continuous
D243V5, multiclass
D243V6, multiclass
    clus
vv   ZNF804B MUTATED ZNF804B WILD-TYPE
  T1               4                37
  T2              12                96
  T3               2                12
  T4               2                 6
D243V7, multiclass
       clus
vv      ZNF804B MUTATED ZNF804B WILD-TYPE
  N0                  9                86
  N1                  6                31
  N2+N3               5                30
D243V8, multiclass
    clus
vv   ZNF804B MUTATED ZNF804B WILD-TYPE
  M0              16               121
  M1               1                 8
  MX               2                20
D243V9, multiclass
     clus
vv    ZNF804B MUTATED ZNF804B WILD-TYPE
  I                 8                80
  II                4                29
  III               7                32
  IV                1                 8
D243V10, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  ZNF804B MUTATED      2   18
  ZNF804B WILD-TYPE   14  138
     clus
vv    ZNF804B MUTATED ZNF804B WILD-TYPE
  NO                2                14
  YES              18               138
D243V11, continuous
D243V12, continuous
D243V13, multiclass
                                             clus
vv                                            ZNF804B MUTATED ZNF804B WILD-TYPE
  CURRENT REFORMED SMOKER FOR < OR = 15 YEARS               9                53
  CURRENT REFORMED SMOKER FOR > 15 YEARS                    4                42
  CURRENT SMOKER                                            3                25
  LIFELONG NON-SMOKER                                       2                22
D243V14, continuous

Clustering(244) Variable = GLIPR1 MUTATION ANALYSIS
D244V1, survival
                  sevent
clus2               0  1
  GLIPR1 MUTATED    2  3
  GLIPR1 WILD-TYPE 97 47
  GLIPR1 MUTATED GLIPR1 WILD-TYPE 
               5              144 
  GLIPR1 MUTATED GLIPR1 WILD-TYPE 
               3               47 
$`GLIPR1 MUTATED`
TCGA-05-4396 TCGA-44-6145 TCGA-49-4505 TCGA-49-4512 TCGA-64-5815 
        9.96         3.35        14.07        29.75         7.33 

$`GLIPR1 WILD-TYPE`
TCGA-05-4249 TCGA-05-4250 TCGA-05-4382 TCGA-05-4384 TCGA-05-4390 TCGA-05-4397 
       38.07         3.98        19.92        14.01        37.02        24.03 
TCGA-05-4398 TCGA-05-4402 TCGA-05-4405 TCGA-05-4415 TCGA-05-4417 TCGA-05-4418 
       47.05         8.02        20.05         2.96        14.93         8.98 
TCGA-05-4420 TCGA-05-4424 TCGA-05-4426 TCGA-05-4427 TCGA-05-4430 TCGA-05-4432 
       29.95        30.02        26.01        26.01        25.02        25.02 
TCGA-05-4433 TCGA-05-4434 TCGA-05-5420 TCGA-05-5423 TCGA-05-5425 TCGA-05-5429 
       24.00        15.02         1.02         4.96         2.96         0.99 
TCGA-05-5715 TCGA-35-3615 TCGA-35-4122 TCGA-35-4123 TCGA-35-5375 TCGA-38-4625 
        2.04         0.46         7.36         5.95         8.68        47.61 
TCGA-38-4626 TCGA-38-4627 TCGA-38-4628 TCGA-38-4629 TCGA-38-4630 TCGA-38-4631 
       85.32        37.71        49.02        28.37        35.28        11.64 
TCGA-38-4632 TCGA-38-6178 TCGA-44-2655 TCGA-44-2656 TCGA-44-2657 TCGA-44-2659 
       44.61         5.19        18.87        19.10        13.15        17.39 
TCGA-44-2661 TCGA-44-2662 TCGA-44-2665 TCGA-44-2666 TCGA-44-2668 TCGA-44-3396 
        3.39        15.78        13.15         3.19         8.09        10.22 
TCGA-44-3398 TCGA-44-3918 TCGA-44-3919 TCGA-44-4112 TCGA-44-5643 TCGA-44-5645 
        8.32         6.44         6.21         4.60         3.48         6.84 
TCGA-44-6144 TCGA-44-6146 TCGA-44-6147 TCGA-44-6148 TCGA-44-6774 TCGA-44-6775 
        0.30         9.93         7.76         3.12         5.42         2.70 
TCGA-44-6776 TCGA-44-6777 TCGA-44-6778 TCGA-44-6779 TCGA-49-4486 TCGA-49-4487 
       63.72        32.45        36.49        16.41        76.21        28.11 
TCGA-49-4488 TCGA-49-4490 TCGA-49-4494 TCGA-49-4501 TCGA-49-4506 TCGA-49-4507 
       28.57        12.66        35.54        46.72        32.84         8.81 
TCGA-49-4510 TCGA-49-4514 TCGA-49-6742 TCGA-49-6743 TCGA-49-6744 TCGA-49-6745 
       29.46        43.20        15.02        12.13        12.99         4.93 
TCGA-50-5044 TCGA-50-5045 TCGA-50-5049 TCGA-50-5051 TCGA-50-5055 TCGA-50-5066 
       20.48        71.47        48.82        14.96        25.81         9.76 
TCGA-50-5068 TCGA-50-5072 TCGA-50-5930 TCGA-50-5931 TCGA-50-5932 TCGA-50-5933 
       49.28         8.05         9.27         8.78        35.87        77.88 
TCGA-50-5935 TCGA-50-5936 TCGA-50-5939 TCGA-50-5941 TCGA-50-5942 TCGA-50-5944 
       21.47         8.45        15.12         9.37         4.44        12.26 
TCGA-50-5946 TCGA-50-6590 TCGA-50-6591 TCGA-50-6592 TCGA-50-6593 TCGA-50-6594 
       11.47        42.31         3.88        25.51        11.05        12.16 
TCGA-50-6595 TCGA-50-6597 TCGA-55-1592 TCGA-55-1594 TCGA-55-1595 TCGA-55-1596 
        6.21        33.37        23.05        38.73        48.62        45.17 
TCGA-55-5899 TCGA-55-6543 TCGA-55-6642 TCGA-55-6712 TCGA-64-1676 TCGA-64-1677 
        2.86         0.07        32.61         0.79        56.81        20.65 
TCGA-64-1678 TCGA-64-1680 TCGA-64-5774 TCGA-64-5775 TCGA-64-5778 TCGA-64-5779 
       39.09        37.02        83.84         0.10        30.44        16.67 
TCGA-64-5781 TCGA-67-3770 TCGA-67-3771 TCGA-67-3772 TCGA-67-3773 TCGA-67-3774 
       39.52         0.99         1.97         0.59         2.04         0.59 
TCGA-67-6215 TCGA-67-6216 TCGA-67-6217 TCGA-71-6725 TCGA-73-4658 TCGA-73-4659 
        0.89         0.69        13.87         2.01        52.57        23.38 
TCGA-73-4662 TCGA-73-4666 TCGA-73-4668 TCGA-73-4670 TCGA-73-4675 TCGA-73-4676 
       29.95        20.28        15.35         0.46         1.32         4.01 
TCGA-73-4677 TCGA-91-6828 TCGA-91-6829 TCGA-91-6831 TCGA-91-6835 TCGA-91-6836 
        1.25         1.22        41.33         1.28         1.15         0.36 

  GLIPR1 MUTATED GLIPR1 WILD-TYPE 
            3.35             0.07 
  GLIPR1 MUTATED GLIPR1 WILD-TYPE 
           29.75            85.32 
  GLIPR1 MUTATED GLIPR1 WILD-TYPE 
            9.96            13.94 
[1] "3.4 - 29.8 (10.0)" "0.1 - 85.3 (13.9)"
      TCGA-05-4249       TCGA-05-4250       TCGA-05-4382       TCGA-05-4384 
"GLIPR1 WILD-TYPE" "GLIPR1 WILD-TYPE" "GLIPR1 WILD-TYPE" "GLIPR1 WILD-TYPE" 
      TCGA-05-4390       TCGA-05-4396       TCGA-05-4397       TCGA-05-4398 
"GLIPR1 WILD-TYPE"   "GLIPR1 MUTATED" "GLIPR1 WILD-TYPE" "GLIPR1 WILD-TYPE" 
      TCGA-05-4402       TCGA-05-4405       TCGA-05-4415       TCGA-05-4417 
"GLIPR1 WILD-TYPE" "GLIPR1 WILD-TYPE" "GLIPR1 WILD-TYPE" "GLIPR1 WILD-TYPE" 
      TCGA-05-4418       TCGA-05-4420       TCGA-05-4424       TCGA-05-4426 
"GLIPR1 WILD-TYPE" "GLIPR1 WILD-TYPE" "GLIPR1 WILD-TYPE" "GLIPR1 WILD-TYPE" 
      TCGA-05-4427       TCGA-05-4430       TCGA-05-4432       TCGA-05-4433 
"GLIPR1 WILD-TYPE" "GLIPR1 WILD-TYPE" "GLIPR1 WILD-TYPE" "GLIPR1 WILD-TYPE" 
      TCGA-05-4434       TCGA-05-5420       TCGA-05-5423       TCGA-05-5425 
"GLIPR1 WILD-TYPE" "GLIPR1 WILD-TYPE" "GLIPR1 WILD-TYPE" "GLIPR1 WILD-TYPE" 
      TCGA-05-5429       TCGA-05-5715       TCGA-35-3615       TCGA-35-4122 
"GLIPR1 WILD-TYPE" "GLIPR1 WILD-TYPE" "GLIPR1 WILD-TYPE" "GLIPR1 WILD-TYPE" 
      TCGA-35-4123       TCGA-35-5375       TCGA-38-4625       TCGA-38-4626 
"GLIPR1 WILD-TYPE" "GLIPR1 WILD-TYPE" "GLIPR1 WILD-TYPE" "GLIPR1 WILD-TYPE" 
      TCGA-38-4627       TCGA-38-4628       TCGA-38-4629       TCGA-38-4630 
"GLIPR1 WILD-TYPE" "GLIPR1 WILD-TYPE" "GLIPR1 WILD-TYPE" "GLIPR1 WILD-TYPE" 
      TCGA-38-4631       TCGA-38-4632       TCGA-38-6178       TCGA-44-2655 
"GLIPR1 WILD-TYPE" "GLIPR1 WILD-TYPE" "GLIPR1 WILD-TYPE" "GLIPR1 WILD-TYPE" 
      TCGA-44-2656       TCGA-44-2657       TCGA-44-2659       TCGA-44-2661 
"GLIPR1 WILD-TYPE" "GLIPR1 WILD-TYPE" "GLIPR1 WILD-TYPE" "GLIPR1 WILD-TYPE" 
      TCGA-44-2662       TCGA-44-2665       TCGA-44-2666       TCGA-44-2668 
"GLIPR1 WILD-TYPE" "GLIPR1 WILD-TYPE" "GLIPR1 WILD-TYPE" "GLIPR1 WILD-TYPE" 
      TCGA-44-3396       TCGA-44-3398       TCGA-44-3918       TCGA-44-3919 
"GLIPR1 WILD-TYPE" "GLIPR1 WILD-TYPE" "GLIPR1 WILD-TYPE" "GLIPR1 WILD-TYPE" 
      TCGA-44-4112       TCGA-44-5643       TCGA-44-5645       TCGA-44-6144 
"GLIPR1 WILD-TYPE" "GLIPR1 WILD-TYPE" "GLIPR1 WILD-TYPE" "GLIPR1 WILD-TYPE" 
      TCGA-44-6145       TCGA-44-6146       TCGA-44-6147       TCGA-44-6148 
  "GLIPR1 MUTATED" "GLIPR1 WILD-TYPE" "GLIPR1 WILD-TYPE" "GLIPR1 WILD-TYPE" 
      TCGA-44-6774       TCGA-44-6775       TCGA-44-6776       TCGA-44-6777 
"GLIPR1 WILD-TYPE" "GLIPR1 WILD-TYPE" "GLIPR1 WILD-TYPE" "GLIPR1 WILD-TYPE" 
      TCGA-44-6778       TCGA-44-6779       TCGA-49-4486       TCGA-49-4487 
"GLIPR1 WILD-TYPE" "GLIPR1 WILD-TYPE" "GLIPR1 WILD-TYPE" "GLIPR1 WILD-TYPE" 
      TCGA-49-4488       TCGA-49-4490       TCGA-49-4494       TCGA-49-4501 
"GLIPR1 WILD-TYPE" "GLIPR1 WILD-TYPE" "GLIPR1 WILD-TYPE" "GLIPR1 WILD-TYPE" 
      TCGA-49-4505       TCGA-49-4506       TCGA-49-4507       TCGA-49-4510 
  "GLIPR1 MUTATED" "GLIPR1 WILD-TYPE" "GLIPR1 WILD-TYPE" "GLIPR1 WILD-TYPE" 
      TCGA-49-4512       TCGA-49-4514       TCGA-49-6742       TCGA-49-6743 
  "GLIPR1 MUTATED" "GLIPR1 WILD-TYPE" "GLIPR1 WILD-TYPE" "GLIPR1 WILD-TYPE" 
      TCGA-49-6744       TCGA-49-6745       TCGA-50-5044       TCGA-50-5045 
"GLIPR1 WILD-TYPE" "GLIPR1 WILD-TYPE" "GLIPR1 WILD-TYPE" "GLIPR1 WILD-TYPE" 
      TCGA-50-5049       TCGA-50-5051       TCGA-50-5055       TCGA-50-5066 
"GLIPR1 WILD-TYPE" "GLIPR1 WILD-TYPE" "GLIPR1 WILD-TYPE" "GLIPR1 WILD-TYPE" 
      TCGA-50-5068       TCGA-50-5072       TCGA-50-5930       TCGA-50-5931 
"GLIPR1 WILD-TYPE" "GLIPR1 WILD-TYPE" "GLIPR1 WILD-TYPE" "GLIPR1 WILD-TYPE" 
      TCGA-50-5932       TCGA-50-5933       TCGA-50-5935       TCGA-50-5936 
"GLIPR1 WILD-TYPE" "GLIPR1 WILD-TYPE" "GLIPR1 WILD-TYPE" "GLIPR1 WILD-TYPE" 
      TCGA-50-5939       TCGA-50-5941       TCGA-50-5942       TCGA-50-5944 
"GLIPR1 WILD-TYPE" "GLIPR1 WILD-TYPE" "GLIPR1 WILD-TYPE" "GLIPR1 WILD-TYPE" 
      TCGA-50-5946       TCGA-50-6590       TCGA-50-6591       TCGA-50-6592 
"GLIPR1 WILD-TYPE" "GLIPR1 WILD-TYPE" "GLIPR1 WILD-TYPE" "GLIPR1 WILD-TYPE" 
      TCGA-50-6593       TCGA-50-6594       TCGA-50-6595       TCGA-50-6597 
"GLIPR1 WILD-TYPE" "GLIPR1 WILD-TYPE" "GLIPR1 WILD-TYPE" "GLIPR1 WILD-TYPE" 
      TCGA-55-1592       TCGA-55-1594       TCGA-55-1595       TCGA-55-1596 
"GLIPR1 WILD-TYPE" "GLIPR1 WILD-TYPE" "GLIPR1 WILD-TYPE" "GLIPR1 WILD-TYPE" 
      TCGA-55-5899       TCGA-55-6543       TCGA-55-6642       TCGA-55-6712 
"GLIPR1 WILD-TYPE" "GLIPR1 WILD-TYPE" "GLIPR1 WILD-TYPE" "GLIPR1 WILD-TYPE" 
      TCGA-64-1676       TCGA-64-1677       TCGA-64-1678       TCGA-64-1680 
"GLIPR1 WILD-TYPE" "GLIPR1 WILD-TYPE" "GLIPR1 WILD-TYPE" "GLIPR1 WILD-TYPE" 
      TCGA-64-5774       TCGA-64-5775       TCGA-64-5778       TCGA-64-5779 
"GLIPR1 WILD-TYPE" "GLIPR1 WILD-TYPE" "GLIPR1 WILD-TYPE" "GLIPR1 WILD-TYPE" 
      TCGA-64-5781       TCGA-64-5815       TCGA-67-3770       TCGA-67-3771 
"GLIPR1 WILD-TYPE"   "GLIPR1 MUTATED" "GLIPR1 WILD-TYPE" "GLIPR1 WILD-TYPE" 
      TCGA-67-3772       TCGA-67-3773       TCGA-67-3774       TCGA-67-6215 
"GLIPR1 WILD-TYPE" "GLIPR1 WILD-TYPE" "GLIPR1 WILD-TYPE" "GLIPR1 WILD-TYPE" 
      TCGA-67-6216       TCGA-67-6217       TCGA-71-6725       TCGA-73-4658 
"GLIPR1 WILD-TYPE" "GLIPR1 WILD-TYPE" "GLIPR1 WILD-TYPE" "GLIPR1 WILD-TYPE" 
      TCGA-73-4659       TCGA-73-4662       TCGA-73-4666       TCGA-73-4668 
"GLIPR1 WILD-TYPE" "GLIPR1 WILD-TYPE" "GLIPR1 WILD-TYPE" "GLIPR1 WILD-TYPE" 
      TCGA-73-4670       TCGA-73-4675       TCGA-73-4676       TCGA-73-4677 
"GLIPR1 WILD-TYPE" "GLIPR1 WILD-TYPE" "GLIPR1 WILD-TYPE" "GLIPR1 WILD-TYPE" 
      TCGA-91-6828       TCGA-91-6829       TCGA-91-6831       TCGA-91-6835 
"GLIPR1 WILD-TYPE" "GLIPR1 WILD-TYPE" "GLIPR1 WILD-TYPE" "GLIPR1 WILD-TYPE" 
      TCGA-91-6836 
"GLIPR1 WILD-TYPE" 
      TCGA-05-4249       TCGA-05-4250       TCGA-05-4382       TCGA-05-4384 
"GLIPR1 WILD-TYPE" "GLIPR1 WILD-TYPE" "GLIPR1 WILD-TYPE" "GLIPR1 WILD-TYPE" 
      TCGA-05-4390       TCGA-05-4396       TCGA-05-4397       TCGA-05-4398 
"GLIPR1 WILD-TYPE"   "GLIPR1 MUTATED" "GLIPR1 WILD-TYPE" "GLIPR1 WILD-TYPE" 
      TCGA-05-4402       TCGA-05-4405       TCGA-05-4415       TCGA-05-4417 
"GLIPR1 WILD-TYPE" "GLIPR1 WILD-TYPE" "GLIPR1 WILD-TYPE" "GLIPR1 WILD-TYPE" 
      TCGA-05-4418       TCGA-05-4420       TCGA-05-4424       TCGA-05-4426 
"GLIPR1 WILD-TYPE" "GLIPR1 WILD-TYPE" "GLIPR1 WILD-TYPE" "GLIPR1 WILD-TYPE" 
      TCGA-05-4427       TCGA-05-4430       TCGA-05-4432       TCGA-05-4433 
"GLIPR1 WILD-TYPE" "GLIPR1 WILD-TYPE" "GLIPR1 WILD-TYPE" "GLIPR1 WILD-TYPE" 
      TCGA-05-4434       TCGA-05-5420       TCGA-05-5423       TCGA-05-5425 
"GLIPR1 WILD-TYPE" "GLIPR1 WILD-TYPE" "GLIPR1 WILD-TYPE" "GLIPR1 WILD-TYPE" 
      TCGA-05-5429       TCGA-05-5715       TCGA-35-3615       TCGA-35-4122 
"GLIPR1 WILD-TYPE" "GLIPR1 WILD-TYPE" "GLIPR1 WILD-TYPE" "GLIPR1 WILD-TYPE" 
      TCGA-35-4123       TCGA-35-5375       TCGA-38-4625       TCGA-38-4626 
"GLIPR1 WILD-TYPE" "GLIPR1 WILD-TYPE" "GLIPR1 WILD-TYPE" "GLIPR1 WILD-TYPE" 
      TCGA-38-4627       TCGA-38-4628       TCGA-38-4629       TCGA-38-4630 
"GLIPR1 WILD-TYPE" "GLIPR1 WILD-TYPE" "GLIPR1 WILD-TYPE" "GLIPR1 WILD-TYPE" 
      TCGA-38-4631       TCGA-38-4632       TCGA-38-6178       TCGA-44-2655 
"GLIPR1 WILD-TYPE" "GLIPR1 WILD-TYPE" "GLIPR1 WILD-TYPE" "GLIPR1 WILD-TYPE" 
      TCGA-44-2656       TCGA-44-2657       TCGA-44-2659       TCGA-44-2661 
"GLIPR1 WILD-TYPE" "GLIPR1 WILD-TYPE" "GLIPR1 WILD-TYPE" "GLIPR1 WILD-TYPE" 
      TCGA-44-2662       TCGA-44-2665       TCGA-44-2666       TCGA-44-2668 
"GLIPR1 WILD-TYPE" "GLIPR1 WILD-TYPE" "GLIPR1 WILD-TYPE" "GLIPR1 WILD-TYPE" 
      TCGA-44-3396       TCGA-44-3398       TCGA-44-3918       TCGA-44-3919 
"GLIPR1 WILD-TYPE" "GLIPR1 WILD-TYPE" "GLIPR1 WILD-TYPE" "GLIPR1 WILD-TYPE" 
      TCGA-44-4112       TCGA-44-5643       TCGA-44-5645       TCGA-44-6144 
"GLIPR1 WILD-TYPE" "GLIPR1 WILD-TYPE" "GLIPR1 WILD-TYPE" "GLIPR1 WILD-TYPE" 
      TCGA-44-6145       TCGA-44-6146       TCGA-44-6147       TCGA-44-6148 
  "GLIPR1 MUTATED" "GLIPR1 WILD-TYPE" "GLIPR1 WILD-TYPE" "GLIPR1 WILD-TYPE" 
      TCGA-44-6774       TCGA-44-6775       TCGA-44-6776       TCGA-44-6777 
"GLIPR1 WILD-TYPE" "GLIPR1 WILD-TYPE" "GLIPR1 WILD-TYPE" "GLIPR1 WILD-TYPE" 
      TCGA-44-6778       TCGA-44-6779       TCGA-49-4486       TCGA-49-4487 
"GLIPR1 WILD-TYPE" "GLIPR1 WILD-TYPE" "GLIPR1 WILD-TYPE" "GLIPR1 WILD-TYPE" 
      TCGA-49-4488       TCGA-49-4490       TCGA-49-4494       TCGA-49-4501 
"GLIPR1 WILD-TYPE" "GLIPR1 WILD-TYPE" "GLIPR1 WILD-TYPE" "GLIPR1 WILD-TYPE" 
      TCGA-49-4505       TCGA-49-4506       TCGA-49-4507       TCGA-49-4510 
  "GLIPR1 MUTATED" "GLIPR1 WILD-TYPE" "GLIPR1 WILD-TYPE" "GLIPR1 WILD-TYPE" 
      TCGA-49-4512       TCGA-49-4514       TCGA-49-6742       TCGA-49-6743 
  "GLIPR1 MUTATED" "GLIPR1 WILD-TYPE" "GLIPR1 WILD-TYPE" "GLIPR1 WILD-TYPE" 
      TCGA-49-6744       TCGA-49-6745       TCGA-50-5044       TCGA-50-5045 
"GLIPR1 WILD-TYPE" "GLIPR1 WILD-TYPE" "GLIPR1 WILD-TYPE" "GLIPR1 WILD-TYPE" 
      TCGA-50-5049       TCGA-50-5051       TCGA-50-5055       TCGA-50-5066 
"GLIPR1 WILD-TYPE" "GLIPR1 WILD-TYPE" "GLIPR1 WILD-TYPE" "GLIPR1 WILD-TYPE" 
      TCGA-50-5068       TCGA-50-5072       TCGA-50-5930       TCGA-50-5931 
"GLIPR1 WILD-TYPE" "GLIPR1 WILD-TYPE" "GLIPR1 WILD-TYPE" "GLIPR1 WILD-TYPE" 
      TCGA-50-5932       TCGA-50-5933       TCGA-50-5935       TCGA-50-5936 
"GLIPR1 WILD-TYPE" "GLIPR1 WILD-TYPE" "GLIPR1 WILD-TYPE" "GLIPR1 WILD-TYPE" 
      TCGA-50-5939       TCGA-50-5941       TCGA-50-5942       TCGA-50-5944 
"GLIPR1 WILD-TYPE" "GLIPR1 WILD-TYPE" "GLIPR1 WILD-TYPE" "GLIPR1 WILD-TYPE" 
      TCGA-50-5946       TCGA-50-6590       TCGA-50-6591       TCGA-50-6592 
"GLIPR1 WILD-TYPE" "GLIPR1 WILD-TYPE" "GLIPR1 WILD-TYPE" "GLIPR1 WILD-TYPE" 
      TCGA-50-6593       TCGA-50-6594       TCGA-50-6595       TCGA-50-6597 
"GLIPR1 WILD-TYPE" "GLIPR1 WILD-TYPE" "GLIPR1 WILD-TYPE" "GLIPR1 WILD-TYPE" 
      TCGA-55-1592       TCGA-55-1594       TCGA-55-1595       TCGA-55-1596 
"GLIPR1 WILD-TYPE" "GLIPR1 WILD-TYPE" "GLIPR1 WILD-TYPE" "GLIPR1 WILD-TYPE" 
      TCGA-55-5899       TCGA-55-6543       TCGA-55-6642       TCGA-55-6712 
"GLIPR1 WILD-TYPE" "GLIPR1 WILD-TYPE" "GLIPR1 WILD-TYPE" "GLIPR1 WILD-TYPE" 
      TCGA-64-1676       TCGA-64-1677       TCGA-64-1678       TCGA-64-1680 
"GLIPR1 WILD-TYPE" "GLIPR1 WILD-TYPE" "GLIPR1 WILD-TYPE" "GLIPR1 WILD-TYPE" 
      TCGA-64-5774       TCGA-64-5775       TCGA-64-5778       TCGA-64-5779 
"GLIPR1 WILD-TYPE" "GLIPR1 WILD-TYPE" "GLIPR1 WILD-TYPE" "GLIPR1 WILD-TYPE" 
      TCGA-64-5781       TCGA-64-5815       TCGA-67-3770       TCGA-67-3771 
"GLIPR1 WILD-TYPE"   "GLIPR1 MUTATED" "GLIPR1 WILD-TYPE" "GLIPR1 WILD-TYPE" 
      TCGA-67-3772       TCGA-67-3773       TCGA-67-3774       TCGA-67-6215 
"GLIPR1 WILD-TYPE" "GLIPR1 WILD-TYPE" "GLIPR1 WILD-TYPE" "GLIPR1 WILD-TYPE" 
      TCGA-67-6216       TCGA-67-6217       TCGA-71-6725       TCGA-73-4658 
"GLIPR1 WILD-TYPE" "GLIPR1 WILD-TYPE" "GLIPR1 WILD-TYPE" "GLIPR1 WILD-TYPE" 
      TCGA-73-4659       TCGA-73-4662       TCGA-73-4666       TCGA-73-4668 
"GLIPR1 WILD-TYPE" "GLIPR1 WILD-TYPE" "GLIPR1 WILD-TYPE" "GLIPR1 WILD-TYPE" 
      TCGA-73-4670       TCGA-73-4675       TCGA-73-4676       TCGA-73-4677 
"GLIPR1 WILD-TYPE" "GLIPR1 WILD-TYPE" "GLIPR1 WILD-TYPE" "GLIPR1 WILD-TYPE" 
      TCGA-91-6828       TCGA-91-6829       TCGA-91-6831       TCGA-91-6835 
"GLIPR1 WILD-TYPE" "GLIPR1 WILD-TYPE" "GLIPR1 WILD-TYPE" "GLIPR1 WILD-TYPE" 
      TCGA-91-6836 
"GLIPR1 WILD-TYPE" 
      TCGA-05-4249       TCGA-05-4250       TCGA-05-4382       TCGA-05-4384 
"GLIPR1 WILD-TYPE" "GLIPR1 WILD-TYPE" "GLIPR1 WILD-TYPE" "GLIPR1 WILD-TYPE" 
      TCGA-05-4390       TCGA-05-4396       TCGA-05-4397       TCGA-05-4398 
"GLIPR1 WILD-TYPE"   "GLIPR1 MUTATED" "GLIPR1 WILD-TYPE" "GLIPR1 WILD-TYPE" 
      TCGA-05-4402       TCGA-05-4405       TCGA-05-4415       TCGA-05-4417 
"GLIPR1 WILD-TYPE" "GLIPR1 WILD-TYPE" "GLIPR1 WILD-TYPE" "GLIPR1 WILD-TYPE" 
      TCGA-05-4418       TCGA-05-4420       TCGA-05-4424       TCGA-05-4426 
"GLIPR1 WILD-TYPE" "GLIPR1 WILD-TYPE" "GLIPR1 WILD-TYPE" "GLIPR1 WILD-TYPE" 
      TCGA-05-4427       TCGA-05-4430       TCGA-05-4432       TCGA-05-4433 
"GLIPR1 WILD-TYPE" "GLIPR1 WILD-TYPE" "GLIPR1 WILD-TYPE" "GLIPR1 WILD-TYPE" 
      TCGA-05-4434       TCGA-05-5420       TCGA-05-5423       TCGA-05-5425 
"GLIPR1 WILD-TYPE" "GLIPR1 WILD-TYPE" "GLIPR1 WILD-TYPE" "GLIPR1 WILD-TYPE" 
      TCGA-05-5429       TCGA-05-5715       TCGA-35-3615       TCGA-35-4122 
"GLIPR1 WILD-TYPE" "GLIPR1 WILD-TYPE" "GLIPR1 WILD-TYPE" "GLIPR1 WILD-TYPE" 
      TCGA-35-4123       TCGA-35-5375       TCGA-38-4625       TCGA-38-4626 
"GLIPR1 WILD-TYPE" "GLIPR1 WILD-TYPE" "GLIPR1 WILD-TYPE" "GLIPR1 WILD-TYPE" 
      TCGA-38-4627       TCGA-38-4628       TCGA-38-4629       TCGA-38-4630 
"GLIPR1 WILD-TYPE" "GLIPR1 WILD-TYPE" "GLIPR1 WILD-TYPE" "GLIPR1 WILD-TYPE" 
      TCGA-38-4631       TCGA-38-4632       TCGA-38-6178       TCGA-44-2655 
"GLIPR1 WILD-TYPE" "GLIPR1 WILD-TYPE" "GLIPR1 WILD-TYPE" "GLIPR1 WILD-TYPE" 
      TCGA-44-2656       TCGA-44-2657       TCGA-44-2659       TCGA-44-2661 
"GLIPR1 WILD-TYPE" "GLIPR1 WILD-TYPE" "GLIPR1 WILD-TYPE" "GLIPR1 WILD-TYPE" 
      TCGA-44-2662       TCGA-44-2665       TCGA-44-2666       TCGA-44-2668 
"GLIPR1 WILD-TYPE" "GLIPR1 WILD-TYPE" "GLIPR1 WILD-TYPE" "GLIPR1 WILD-TYPE" 
      TCGA-44-3396       TCGA-44-3398       TCGA-44-3918       TCGA-44-3919 
"GLIPR1 WILD-TYPE" "GLIPR1 WILD-TYPE" "GLIPR1 WILD-TYPE" "GLIPR1 WILD-TYPE" 
      TCGA-44-4112       TCGA-44-5643       TCGA-44-5645       TCGA-44-6144 
"GLIPR1 WILD-TYPE" "GLIPR1 WILD-TYPE" "GLIPR1 WILD-TYPE" "GLIPR1 WILD-TYPE" 
      TCGA-44-6145       TCGA-44-6146       TCGA-44-6147       TCGA-44-6148 
  "GLIPR1 MUTATED" "GLIPR1 WILD-TYPE" "GLIPR1 WILD-TYPE" "GLIPR1 WILD-TYPE" 
      TCGA-44-6774       TCGA-44-6775       TCGA-44-6776       TCGA-44-6777 
"GLIPR1 WILD-TYPE" "GLIPR1 WILD-TYPE" "GLIPR1 WILD-TYPE" "GLIPR1 WILD-TYPE" 
      TCGA-44-6778       TCGA-44-6779       TCGA-49-4486       TCGA-49-4487 
"GLIPR1 WILD-TYPE" "GLIPR1 WILD-TYPE" "GLIPR1 WILD-TYPE" "GLIPR1 WILD-TYPE" 
      TCGA-49-4488       TCGA-49-4490       TCGA-49-4494       TCGA-49-4501 
"GLIPR1 WILD-TYPE" "GLIPR1 WILD-TYPE" "GLIPR1 WILD-TYPE" "GLIPR1 WILD-TYPE" 
      TCGA-49-4505       TCGA-49-4506       TCGA-49-4507       TCGA-49-4510 
  "GLIPR1 MUTATED" "GLIPR1 WILD-TYPE" "GLIPR1 WILD-TYPE" "GLIPR1 WILD-TYPE" 
      TCGA-49-4512       TCGA-49-4514       TCGA-49-6742       TCGA-49-6743 
  "GLIPR1 MUTATED" "GLIPR1 WILD-TYPE" "GLIPR1 WILD-TYPE" "GLIPR1 WILD-TYPE" 
      TCGA-49-6744       TCGA-49-6745       TCGA-50-5044       TCGA-50-5045 
"GLIPR1 WILD-TYPE" "GLIPR1 WILD-TYPE" "GLIPR1 WILD-TYPE" "GLIPR1 WILD-TYPE" 
      TCGA-50-5049       TCGA-50-5051       TCGA-50-5055       TCGA-50-5066 
"GLIPR1 WILD-TYPE" "GLIPR1 WILD-TYPE" "GLIPR1 WILD-TYPE" "GLIPR1 WILD-TYPE" 
      TCGA-50-5068       TCGA-50-5072       TCGA-50-5930       TCGA-50-5931 
"GLIPR1 WILD-TYPE" "GLIPR1 WILD-TYPE" "GLIPR1 WILD-TYPE" "GLIPR1 WILD-TYPE" 
      TCGA-50-5932       TCGA-50-5933       TCGA-50-5935       TCGA-50-5936 
"GLIPR1 WILD-TYPE" "GLIPR1 WILD-TYPE" "GLIPR1 WILD-TYPE" "GLIPR1 WILD-TYPE" 
      TCGA-50-5939       TCGA-50-5941       TCGA-50-5942       TCGA-50-5944 
"GLIPR1 WILD-TYPE" "GLIPR1 WILD-TYPE" "GLIPR1 WILD-TYPE" "GLIPR1 WILD-TYPE" 
      TCGA-50-5946       TCGA-50-6590       TCGA-50-6591       TCGA-50-6592 
"GLIPR1 WILD-TYPE" "GLIPR1 WILD-TYPE" "GLIPR1 WILD-TYPE" "GLIPR1 WILD-TYPE" 
      TCGA-50-6593       TCGA-50-6594       TCGA-50-6595       TCGA-50-6597 
"GLIPR1 WILD-TYPE" "GLIPR1 WILD-TYPE" "GLIPR1 WILD-TYPE" "GLIPR1 WILD-TYPE" 
      TCGA-55-1592       TCGA-55-1594       TCGA-55-1595       TCGA-55-1596 
"GLIPR1 WILD-TYPE" "GLIPR1 WILD-TYPE" "GLIPR1 WILD-TYPE" "GLIPR1 WILD-TYPE" 
      TCGA-55-5899       TCGA-55-6543       TCGA-55-6642       TCGA-55-6712 
"GLIPR1 WILD-TYPE" "GLIPR1 WILD-TYPE" "GLIPR1 WILD-TYPE" "GLIPR1 WILD-TYPE" 
      TCGA-64-1676       TCGA-64-1677       TCGA-64-1678       TCGA-64-1680 
"GLIPR1 WILD-TYPE" "GLIPR1 WILD-TYPE" "GLIPR1 WILD-TYPE" "GLIPR1 WILD-TYPE" 
      TCGA-64-5774       TCGA-64-5775       TCGA-64-5778       TCGA-64-5779 
"GLIPR1 WILD-TYPE" "GLIPR1 WILD-TYPE" "GLIPR1 WILD-TYPE" "GLIPR1 WILD-TYPE" 
      TCGA-64-5781       TCGA-64-5815       TCGA-67-3770       TCGA-67-3771 
"GLIPR1 WILD-TYPE"   "GLIPR1 MUTATED" "GLIPR1 WILD-TYPE" "GLIPR1 WILD-TYPE" 
      TCGA-67-3772       TCGA-67-3773       TCGA-67-3774       TCGA-67-6215 
"GLIPR1 WILD-TYPE" "GLIPR1 WILD-TYPE" "GLIPR1 WILD-TYPE" "GLIPR1 WILD-TYPE" 
      TCGA-67-6216       TCGA-67-6217       TCGA-71-6725       TCGA-73-4658 
"GLIPR1 WILD-TYPE" "GLIPR1 WILD-TYPE" "GLIPR1 WILD-TYPE" "GLIPR1 WILD-TYPE" 
      TCGA-73-4659       TCGA-73-4662       TCGA-73-4666       TCGA-73-4668 
"GLIPR1 WILD-TYPE" "GLIPR1 WILD-TYPE" "GLIPR1 WILD-TYPE" "GLIPR1 WILD-TYPE" 
      TCGA-73-4670       TCGA-73-4675       TCGA-73-4676       TCGA-73-4677 
"GLIPR1 WILD-TYPE" "GLIPR1 WILD-TYPE" "GLIPR1 WILD-TYPE" "GLIPR1 WILD-TYPE" 
      TCGA-91-6828       TCGA-91-6829       TCGA-91-6831       TCGA-91-6835 
"GLIPR1 WILD-TYPE" "GLIPR1 WILD-TYPE" "GLIPR1 WILD-TYPE" "GLIPR1 WILD-TYPE" 
      TCGA-91-6836 
"GLIPR1 WILD-TYPE" 
[1] "hr=" "3.6"
D244V2, continuous
D244V3, binary
[1] "tbl2"
                  cls
clus               [,1] [,2]
  GLIPR1 MUTATED      3    3
  GLIPR1 WILD-TYPE   90   76
        clus
vv       GLIPR1 MUTATED GLIPR1 WILD-TYPE
  FEMALE              3               90
  MALE                3               76
D244V4, continuous
D244V5, multiclass
D244V6, multiclass
    clus
vv   GLIPR1 MUTATED GLIPR1 WILD-TYPE
  T1              1               40
  T2              4              104
  T3              0               14
  T4              1                7
D244V7, multiclass
       clus
vv      GLIPR1 MUTATED GLIPR1 WILD-TYPE
  N0                 1               94
  N1                 3               34
  N2+N3              2               33
D244V8, multiclass
    clus
vv   GLIPR1 MUTATED GLIPR1 WILD-TYPE
  M0              4              133
  M1              1                8
  MX              1               21
D244V9, multiclass
     clus
vv    GLIPR1 MUTATED GLIPR1 WILD-TYPE
  I                1               87
  II               2               31
  III              2               37
  IV               1                8
D244V10, binary
[1] "tbl2"
                  cls
clus               [,1] [,2]
  GLIPR1 MUTATED      0    6
  GLIPR1 WILD-TYPE   16  150
     clus
vv    GLIPR1 MUTATED GLIPR1 WILD-TYPE
  NO               0               16
  YES              6              150
D244V11, continuous
D244V12, continuous
D244V13, multiclass
                                             clus
vv                                            GLIPR1 MUTATED GLIPR1 WILD-TYPE
  CURRENT REFORMED SMOKER FOR < OR = 15 YEARS              3               59
  CURRENT REFORMED SMOKER FOR > 15 YEARS                   2               44
  CURRENT SMOKER                                           0               28
  LIFELONG NON-SMOKER                                      1               23
D244V14, continuous

Clustering(245) Variable = CNKSR2 MUTATION ANALYSIS
D245V1, survival
                  sevent
clus2               0  1
  CNKSR2 MUTATED    4  3
  CNKSR2 WILD-TYPE 95 47
  CNKSR2 MUTATED CNKSR2 WILD-TYPE 
               7              142 
  CNKSR2 MUTATED CNKSR2 WILD-TYPE 
               3               47 
$`CNKSR2 MUTATED`
TCGA-05-4396 TCGA-38-4631 TCGA-49-4514 TCGA-49-6743 TCGA-49-6744 TCGA-91-6829 
        9.96        11.64        43.20        12.13        12.99        41.33 
TCGA-91-6831 
        1.28 

$`CNKSR2 WILD-TYPE`
TCGA-05-4249 TCGA-05-4250 TCGA-05-4382 TCGA-05-4384 TCGA-05-4390 TCGA-05-4397 
       38.07         3.98        19.92        14.01        37.02        24.03 
TCGA-05-4398 TCGA-05-4402 TCGA-05-4405 TCGA-05-4415 TCGA-05-4417 TCGA-05-4418 
       47.05         8.02        20.05         2.96        14.93         8.98 
TCGA-05-4420 TCGA-05-4424 TCGA-05-4426 TCGA-05-4427 TCGA-05-4430 TCGA-05-4432 
       29.95        30.02        26.01        26.01        25.02        25.02 
TCGA-05-4433 TCGA-05-4434 TCGA-05-5420 TCGA-05-5423 TCGA-05-5425 TCGA-05-5429 
       24.00        15.02         1.02         4.96         2.96         0.99 
TCGA-05-5715 TCGA-35-3615 TCGA-35-4122 TCGA-35-4123 TCGA-35-5375 TCGA-38-4625 
        2.04         0.46         7.36         5.95         8.68        47.61 
TCGA-38-4626 TCGA-38-4627 TCGA-38-4628 TCGA-38-4629 TCGA-38-4630 TCGA-38-4632 
       85.32        37.71        49.02        28.37        35.28        44.61 
TCGA-38-6178 TCGA-44-2655 TCGA-44-2656 TCGA-44-2657 TCGA-44-2659 TCGA-44-2661 
        5.19        18.87        19.10        13.15        17.39         3.39 
TCGA-44-2662 TCGA-44-2665 TCGA-44-2666 TCGA-44-2668 TCGA-44-3396 TCGA-44-3398 
       15.78        13.15         3.19         8.09        10.22         8.32 
TCGA-44-3918 TCGA-44-3919 TCGA-44-4112 TCGA-44-5643 TCGA-44-5645 TCGA-44-6144 
        6.44         6.21         4.60         3.48         6.84         0.30 
TCGA-44-6145 TCGA-44-6146 TCGA-44-6147 TCGA-44-6148 TCGA-44-6774 TCGA-44-6775 
        3.35         9.93         7.76         3.12         5.42         2.70 
TCGA-44-6776 TCGA-44-6777 TCGA-44-6778 TCGA-44-6779 TCGA-49-4486 TCGA-49-4487 
       63.72        32.45        36.49        16.41        76.21        28.11 
TCGA-49-4488 TCGA-49-4490 TCGA-49-4494 TCGA-49-4501 TCGA-49-4505 TCGA-49-4506 
       28.57        12.66        35.54        46.72        14.07        32.84 
TCGA-49-4507 TCGA-49-4510 TCGA-49-4512 TCGA-49-6742 TCGA-49-6745 TCGA-50-5044 
        8.81        29.46        29.75        15.02         4.93        20.48 
TCGA-50-5045 TCGA-50-5049 TCGA-50-5051 TCGA-50-5055 TCGA-50-5066 TCGA-50-5068 
       71.47        48.82        14.96        25.81         9.76        49.28 
TCGA-50-5072 TCGA-50-5930 TCGA-50-5931 TCGA-50-5932 TCGA-50-5933 TCGA-50-5935 
        8.05         9.27         8.78        35.87        77.88        21.47 
TCGA-50-5936 TCGA-50-5939 TCGA-50-5941 TCGA-50-5942 TCGA-50-5944 TCGA-50-5946 
        8.45        15.12         9.37         4.44        12.26        11.47 
TCGA-50-6590 TCGA-50-6591 TCGA-50-6592 TCGA-50-6593 TCGA-50-6594 TCGA-50-6595 
       42.31         3.88        25.51        11.05        12.16         6.21 
TCGA-50-6597 TCGA-55-1592 TCGA-55-1594 TCGA-55-1595 TCGA-55-1596 TCGA-55-5899 
       33.37        23.05        38.73        48.62        45.17         2.86 
TCGA-55-6543 TCGA-55-6642 TCGA-55-6712 TCGA-64-1676 TCGA-64-1677 TCGA-64-1678 
        0.07        32.61         0.79        56.81        20.65        39.09 
TCGA-64-1680 TCGA-64-5774 TCGA-64-5775 TCGA-64-5778 TCGA-64-5779 TCGA-64-5781 
       37.02        83.84         0.10        30.44        16.67        39.52 
TCGA-64-5815 TCGA-67-3770 TCGA-67-3771 TCGA-67-3772 TCGA-67-3773 TCGA-67-3774 
        7.33         0.99         1.97         0.59         2.04         0.59 
TCGA-67-6215 TCGA-67-6216 TCGA-67-6217 TCGA-71-6725 TCGA-73-4658 TCGA-73-4659 
        0.89         0.69        13.87         2.01        52.57        23.38 
TCGA-73-4662 TCGA-73-4666 TCGA-73-4668 TCGA-73-4670 TCGA-73-4675 TCGA-73-4676 
       29.95        20.28        15.35         0.46         1.32         4.01 
TCGA-73-4677 TCGA-91-6828 TCGA-91-6835 TCGA-91-6836 
        1.25         1.22         1.15         0.36 

  CNKSR2 MUTATED CNKSR2 WILD-TYPE 
            1.28             0.07 
  CNKSR2 MUTATED CNKSR2 WILD-TYPE 
           43.20            85.32 
  CNKSR2 MUTATED CNKSR2 WILD-TYPE 
           12.13            14.04 
[1] "1.3 - 43.2 (12.1)" "0.1 - 85.3 (14.0)"
      TCGA-05-4249       TCGA-05-4250       TCGA-05-4382       TCGA-05-4384 
"CNKSR2 WILD-TYPE" "CNKSR2 WILD-TYPE" "CNKSR2 WILD-TYPE" "CNKSR2 WILD-TYPE" 
      TCGA-05-4390       TCGA-05-4396       TCGA-05-4397       TCGA-05-4398 
"CNKSR2 WILD-TYPE"   "CNKSR2 MUTATED" "CNKSR2 WILD-TYPE" "CNKSR2 WILD-TYPE" 
      TCGA-05-4402       TCGA-05-4405       TCGA-05-4415       TCGA-05-4417 
"CNKSR2 WILD-TYPE" "CNKSR2 WILD-TYPE" "CNKSR2 WILD-TYPE" "CNKSR2 WILD-TYPE" 
      TCGA-05-4418       TCGA-05-4420       TCGA-05-4424       TCGA-05-4426 
"CNKSR2 WILD-TYPE" "CNKSR2 WILD-TYPE" "CNKSR2 WILD-TYPE" "CNKSR2 WILD-TYPE" 
      TCGA-05-4427       TCGA-05-4430       TCGA-05-4432       TCGA-05-4433 
"CNKSR2 WILD-TYPE" "CNKSR2 WILD-TYPE" "CNKSR2 WILD-TYPE" "CNKSR2 WILD-TYPE" 
      TCGA-05-4434       TCGA-05-5420       TCGA-05-5423       TCGA-05-5425 
"CNKSR2 WILD-TYPE" "CNKSR2 WILD-TYPE" "CNKSR2 WILD-TYPE" "CNKSR2 WILD-TYPE" 
      TCGA-05-5429       TCGA-05-5715       TCGA-35-3615       TCGA-35-4122 
"CNKSR2 WILD-TYPE" "CNKSR2 WILD-TYPE" "CNKSR2 WILD-TYPE" "CNKSR2 WILD-TYPE" 
      TCGA-35-4123       TCGA-35-5375       TCGA-38-4625       TCGA-38-4626 
"CNKSR2 WILD-TYPE" "CNKSR2 WILD-TYPE" "CNKSR2 WILD-TYPE" "CNKSR2 WILD-TYPE" 
      TCGA-38-4627       TCGA-38-4628       TCGA-38-4629       TCGA-38-4630 
"CNKSR2 WILD-TYPE" "CNKSR2 WILD-TYPE" "CNKSR2 WILD-TYPE" "CNKSR2 WILD-TYPE" 
      TCGA-38-4631       TCGA-38-4632       TCGA-38-6178       TCGA-44-2655 
  "CNKSR2 MUTATED" "CNKSR2 WILD-TYPE" "CNKSR2 WILD-TYPE" "CNKSR2 WILD-TYPE" 
      TCGA-44-2656       TCGA-44-2657       TCGA-44-2659       TCGA-44-2661 
"CNKSR2 WILD-TYPE" "CNKSR2 WILD-TYPE" "CNKSR2 WILD-TYPE" "CNKSR2 WILD-TYPE" 
      TCGA-44-2662       TCGA-44-2665       TCGA-44-2666       TCGA-44-2668 
"CNKSR2 WILD-TYPE" "CNKSR2 WILD-TYPE" "CNKSR2 WILD-TYPE" "CNKSR2 WILD-TYPE" 
      TCGA-44-3396       TCGA-44-3398       TCGA-44-3918       TCGA-44-3919 
"CNKSR2 WILD-TYPE" "CNKSR2 WILD-TYPE" "CNKSR2 WILD-TYPE" "CNKSR2 WILD-TYPE" 
      TCGA-44-4112       TCGA-44-5643       TCGA-44-5645       TCGA-44-6144 
"CNKSR2 WILD-TYPE" "CNKSR2 WILD-TYPE" "CNKSR2 WILD-TYPE" "CNKSR2 WILD-TYPE" 
      TCGA-44-6145       TCGA-44-6146       TCGA-44-6147       TCGA-44-6148 
"CNKSR2 WILD-TYPE" "CNKSR2 WILD-TYPE" "CNKSR2 WILD-TYPE" "CNKSR2 WILD-TYPE" 
      TCGA-44-6774       TCGA-44-6775       TCGA-44-6776       TCGA-44-6777 
"CNKSR2 WILD-TYPE" "CNKSR2 WILD-TYPE" "CNKSR2 WILD-TYPE" "CNKSR2 WILD-TYPE" 
      TCGA-44-6778       TCGA-44-6779       TCGA-49-4486       TCGA-49-4487 
"CNKSR2 WILD-TYPE" "CNKSR2 WILD-TYPE" "CNKSR2 WILD-TYPE" "CNKSR2 WILD-TYPE" 
      TCGA-49-4488       TCGA-49-4490       TCGA-49-4494       TCGA-49-4501 
"CNKSR2 WILD-TYPE" "CNKSR2 WILD-TYPE" "CNKSR2 WILD-TYPE" "CNKSR2 WILD-TYPE" 
      TCGA-49-4505       TCGA-49-4506       TCGA-49-4507       TCGA-49-4510 
"CNKSR2 WILD-TYPE" "CNKSR2 WILD-TYPE" "CNKSR2 WILD-TYPE" "CNKSR2 WILD-TYPE" 
      TCGA-49-4512       TCGA-49-4514       TCGA-49-6742       TCGA-49-6743 
"CNKSR2 WILD-TYPE"   "CNKSR2 MUTATED" "CNKSR2 WILD-TYPE"   "CNKSR2 MUTATED" 
      TCGA-49-6744       TCGA-49-6745       TCGA-50-5044       TCGA-50-5045 
  "CNKSR2 MUTATED" "CNKSR2 WILD-TYPE" "CNKSR2 WILD-TYPE" "CNKSR2 WILD-TYPE" 
      TCGA-50-5049       TCGA-50-5051       TCGA-50-5055       TCGA-50-5066 
"CNKSR2 WILD-TYPE" "CNKSR2 WILD-TYPE" "CNKSR2 WILD-TYPE" "CNKSR2 WILD-TYPE" 
      TCGA-50-5068       TCGA-50-5072       TCGA-50-5930       TCGA-50-5931 
"CNKSR2 WILD-TYPE" "CNKSR2 WILD-TYPE" "CNKSR2 WILD-TYPE" "CNKSR2 WILD-TYPE" 
      TCGA-50-5932       TCGA-50-5933       TCGA-50-5935       TCGA-50-5936 
"CNKSR2 WILD-TYPE" "CNKSR2 WILD-TYPE" "CNKSR2 WILD-TYPE" "CNKSR2 WILD-TYPE" 
      TCGA-50-5939       TCGA-50-5941       TCGA-50-5942       TCGA-50-5944 
"CNKSR2 WILD-TYPE" "CNKSR2 WILD-TYPE" "CNKSR2 WILD-TYPE" "CNKSR2 WILD-TYPE" 
      TCGA-50-5946       TCGA-50-6590       TCGA-50-6591       TCGA-50-6592 
"CNKSR2 WILD-TYPE" "CNKSR2 WILD-TYPE" "CNKSR2 WILD-TYPE" "CNKSR2 WILD-TYPE" 
      TCGA-50-6593       TCGA-50-6594       TCGA-50-6595       TCGA-50-6597 
"CNKSR2 WILD-TYPE" "CNKSR2 WILD-TYPE" "CNKSR2 WILD-TYPE" "CNKSR2 WILD-TYPE" 
      TCGA-55-1592       TCGA-55-1594       TCGA-55-1595       TCGA-55-1596 
"CNKSR2 WILD-TYPE" "CNKSR2 WILD-TYPE" "CNKSR2 WILD-TYPE" "CNKSR2 WILD-TYPE" 
      TCGA-55-5899       TCGA-55-6543       TCGA-55-6642       TCGA-55-6712 
"CNKSR2 WILD-TYPE" "CNKSR2 WILD-TYPE" "CNKSR2 WILD-TYPE" "CNKSR2 WILD-TYPE" 
      TCGA-64-1676       TCGA-64-1677       TCGA-64-1678       TCGA-64-1680 
"CNKSR2 WILD-TYPE" "CNKSR2 WILD-TYPE" "CNKSR2 WILD-TYPE" "CNKSR2 WILD-TYPE" 
      TCGA-64-5774       TCGA-64-5775       TCGA-64-5778       TCGA-64-5779 
"CNKSR2 WILD-TYPE" "CNKSR2 WILD-TYPE" "CNKSR2 WILD-TYPE" "CNKSR2 WILD-TYPE" 
      TCGA-64-5781       TCGA-64-5815       TCGA-67-3770       TCGA-67-3771 
"CNKSR2 WILD-TYPE" "CNKSR2 WILD-TYPE" "CNKSR2 WILD-TYPE" "CNKSR2 WILD-TYPE" 
      TCGA-67-3772       TCGA-67-3773       TCGA-67-3774       TCGA-67-6215 
"CNKSR2 WILD-TYPE" "CNKSR2 WILD-TYPE" "CNKSR2 WILD-TYPE" "CNKSR2 WILD-TYPE" 
      TCGA-67-6216       TCGA-67-6217       TCGA-71-6725       TCGA-73-4658 
"CNKSR2 WILD-TYPE" "CNKSR2 WILD-TYPE" "CNKSR2 WILD-TYPE" "CNKSR2 WILD-TYPE" 
      TCGA-73-4659       TCGA-73-4662       TCGA-73-4666       TCGA-73-4668 
"CNKSR2 WILD-TYPE" "CNKSR2 WILD-TYPE" "CNKSR2 WILD-TYPE" "CNKSR2 WILD-TYPE" 
      TCGA-73-4670       TCGA-73-4675       TCGA-73-4676       TCGA-73-4677 
"CNKSR2 WILD-TYPE" "CNKSR2 WILD-TYPE" "CNKSR2 WILD-TYPE" "CNKSR2 WILD-TYPE" 
      TCGA-91-6828       TCGA-91-6829       TCGA-91-6831       TCGA-91-6835 
"CNKSR2 WILD-TYPE"   "CNKSR2 MUTATED"   "CNKSR2 MUTATED" "CNKSR2 WILD-TYPE" 
      TCGA-91-6836 
"CNKSR2 WILD-TYPE" 
      TCGA-05-4249       TCGA-05-4250       TCGA-05-4382       TCGA-05-4384 
"CNKSR2 WILD-TYPE" "CNKSR2 WILD-TYPE" "CNKSR2 WILD-TYPE" "CNKSR2 WILD-TYPE" 
      TCGA-05-4390       TCGA-05-4396       TCGA-05-4397       TCGA-05-4398 
"CNKSR2 WILD-TYPE"   "CNKSR2 MUTATED" "CNKSR2 WILD-TYPE" "CNKSR2 WILD-TYPE" 
      TCGA-05-4402       TCGA-05-4405       TCGA-05-4415       TCGA-05-4417 
"CNKSR2 WILD-TYPE" "CNKSR2 WILD-TYPE" "CNKSR2 WILD-TYPE" "CNKSR2 WILD-TYPE" 
      TCGA-05-4418       TCGA-05-4420       TCGA-05-4424       TCGA-05-4426 
"CNKSR2 WILD-TYPE" "CNKSR2 WILD-TYPE" "CNKSR2 WILD-TYPE" "CNKSR2 WILD-TYPE" 
      TCGA-05-4427       TCGA-05-4430       TCGA-05-4432       TCGA-05-4433 
"CNKSR2 WILD-TYPE" "CNKSR2 WILD-TYPE" "CNKSR2 WILD-TYPE" "CNKSR2 WILD-TYPE" 
      TCGA-05-4434       TCGA-05-5420       TCGA-05-5423       TCGA-05-5425 
"CNKSR2 WILD-TYPE" "CNKSR2 WILD-TYPE" "CNKSR2 WILD-TYPE" "CNKSR2 WILD-TYPE" 
      TCGA-05-5429       TCGA-05-5715       TCGA-35-3615       TCGA-35-4122 
"CNKSR2 WILD-TYPE" "CNKSR2 WILD-TYPE" "CNKSR2 WILD-TYPE" "CNKSR2 WILD-TYPE" 
      TCGA-35-4123       TCGA-35-5375       TCGA-38-4625       TCGA-38-4626 
"CNKSR2 WILD-TYPE" "CNKSR2 WILD-TYPE" "CNKSR2 WILD-TYPE" "CNKSR2 WILD-TYPE" 
      TCGA-38-4627       TCGA-38-4628       TCGA-38-4629       TCGA-38-4630 
"CNKSR2 WILD-TYPE" "CNKSR2 WILD-TYPE" "CNKSR2 WILD-TYPE" "CNKSR2 WILD-TYPE" 
      TCGA-38-4631       TCGA-38-4632       TCGA-38-6178       TCGA-44-2655 
  "CNKSR2 MUTATED" "CNKSR2 WILD-TYPE" "CNKSR2 WILD-TYPE" "CNKSR2 WILD-TYPE" 
      TCGA-44-2656       TCGA-44-2657       TCGA-44-2659       TCGA-44-2661 
"CNKSR2 WILD-TYPE" "CNKSR2 WILD-TYPE" "CNKSR2 WILD-TYPE" "CNKSR2 WILD-TYPE" 
      TCGA-44-2662       TCGA-44-2665       TCGA-44-2666       TCGA-44-2668 
"CNKSR2 WILD-TYPE" "CNKSR2 WILD-TYPE" "CNKSR2 WILD-TYPE" "CNKSR2 WILD-TYPE" 
      TCGA-44-3396       TCGA-44-3398       TCGA-44-3918       TCGA-44-3919 
"CNKSR2 WILD-TYPE" "CNKSR2 WILD-TYPE" "CNKSR2 WILD-TYPE" "CNKSR2 WILD-TYPE" 
      TCGA-44-4112       TCGA-44-5643       TCGA-44-5645       TCGA-44-6144 
"CNKSR2 WILD-TYPE" "CNKSR2 WILD-TYPE" "CNKSR2 WILD-TYPE" "CNKSR2 WILD-TYPE" 
      TCGA-44-6145       TCGA-44-6146       TCGA-44-6147       TCGA-44-6148 
"CNKSR2 WILD-TYPE" "CNKSR2 WILD-TYPE" "CNKSR2 WILD-TYPE" "CNKSR2 WILD-TYPE" 
      TCGA-44-6774       TCGA-44-6775       TCGA-44-6776       TCGA-44-6777 
"CNKSR2 WILD-TYPE" "CNKSR2 WILD-TYPE" "CNKSR2 WILD-TYPE" "CNKSR2 WILD-TYPE" 
      TCGA-44-6778       TCGA-44-6779       TCGA-49-4486       TCGA-49-4487 
"CNKSR2 WILD-TYPE" "CNKSR2 WILD-TYPE" "CNKSR2 WILD-TYPE" "CNKSR2 WILD-TYPE" 
      TCGA-49-4488       TCGA-49-4490       TCGA-49-4494       TCGA-49-4501 
"CNKSR2 WILD-TYPE" "CNKSR2 WILD-TYPE" "CNKSR2 WILD-TYPE" "CNKSR2 WILD-TYPE" 
      TCGA-49-4505       TCGA-49-4506       TCGA-49-4507       TCGA-49-4510 
"CNKSR2 WILD-TYPE" "CNKSR2 WILD-TYPE" "CNKSR2 WILD-TYPE" "CNKSR2 WILD-TYPE" 
      TCGA-49-4512       TCGA-49-4514       TCGA-49-6742       TCGA-49-6743 
"CNKSR2 WILD-TYPE"   "CNKSR2 MUTATED" "CNKSR2 WILD-TYPE"   "CNKSR2 MUTATED" 
      TCGA-49-6744       TCGA-49-6745       TCGA-50-5044       TCGA-50-5045 
  "CNKSR2 MUTATED" "CNKSR2 WILD-TYPE" "CNKSR2 WILD-TYPE" "CNKSR2 WILD-TYPE" 
      TCGA-50-5049       TCGA-50-5051       TCGA-50-5055       TCGA-50-5066 
"CNKSR2 WILD-TYPE" "CNKSR2 WILD-TYPE" "CNKSR2 WILD-TYPE" "CNKSR2 WILD-TYPE" 
      TCGA-50-5068       TCGA-50-5072       TCGA-50-5930       TCGA-50-5931 
"CNKSR2 WILD-TYPE" "CNKSR2 WILD-TYPE" "CNKSR2 WILD-TYPE" "CNKSR2 WILD-TYPE" 
      TCGA-50-5932       TCGA-50-5933       TCGA-50-5935       TCGA-50-5936 
"CNKSR2 WILD-TYPE" "CNKSR2 WILD-TYPE" "CNKSR2 WILD-TYPE" "CNKSR2 WILD-TYPE" 
      TCGA-50-5939       TCGA-50-5941       TCGA-50-5942       TCGA-50-5944 
"CNKSR2 WILD-TYPE" "CNKSR2 WILD-TYPE" "CNKSR2 WILD-TYPE" "CNKSR2 WILD-TYPE" 
      TCGA-50-5946       TCGA-50-6590       TCGA-50-6591       TCGA-50-6592 
"CNKSR2 WILD-TYPE" "CNKSR2 WILD-TYPE" "CNKSR2 WILD-TYPE" "CNKSR2 WILD-TYPE" 
      TCGA-50-6593       TCGA-50-6594       TCGA-50-6595       TCGA-50-6597 
"CNKSR2 WILD-TYPE" "CNKSR2 WILD-TYPE" "CNKSR2 WILD-TYPE" "CNKSR2 WILD-TYPE" 
      TCGA-55-1592       TCGA-55-1594       TCGA-55-1595       TCGA-55-1596 
"CNKSR2 WILD-TYPE" "CNKSR2 WILD-TYPE" "CNKSR2 WILD-TYPE" "CNKSR2 WILD-TYPE" 
      TCGA-55-5899       TCGA-55-6543       TCGA-55-6642       TCGA-55-6712 
"CNKSR2 WILD-TYPE" "CNKSR2 WILD-TYPE" "CNKSR2 WILD-TYPE" "CNKSR2 WILD-TYPE" 
      TCGA-64-1676       TCGA-64-1677       TCGA-64-1678       TCGA-64-1680 
"CNKSR2 WILD-TYPE" "CNKSR2 WILD-TYPE" "CNKSR2 WILD-TYPE" "CNKSR2 WILD-TYPE" 
      TCGA-64-5774       TCGA-64-5775       TCGA-64-5778       TCGA-64-5779 
"CNKSR2 WILD-TYPE" "CNKSR2 WILD-TYPE" "CNKSR2 WILD-TYPE" "CNKSR2 WILD-TYPE" 
      TCGA-64-5781       TCGA-64-5815       TCGA-67-3770       TCGA-67-3771 
"CNKSR2 WILD-TYPE" "CNKSR2 WILD-TYPE" "CNKSR2 WILD-TYPE" "CNKSR2 WILD-TYPE" 
      TCGA-67-3772       TCGA-67-3773       TCGA-67-3774       TCGA-67-6215 
"CNKSR2 WILD-TYPE" "CNKSR2 WILD-TYPE" "CNKSR2 WILD-TYPE" "CNKSR2 WILD-TYPE" 
      TCGA-67-6216       TCGA-67-6217       TCGA-71-6725       TCGA-73-4658 
"CNKSR2 WILD-TYPE" "CNKSR2 WILD-TYPE" "CNKSR2 WILD-TYPE" "CNKSR2 WILD-TYPE" 
      TCGA-73-4659       TCGA-73-4662       TCGA-73-4666       TCGA-73-4668 
"CNKSR2 WILD-TYPE" "CNKSR2 WILD-TYPE" "CNKSR2 WILD-TYPE" "CNKSR2 WILD-TYPE" 
      TCGA-73-4670       TCGA-73-4675       TCGA-73-4676       TCGA-73-4677 
"CNKSR2 WILD-TYPE" "CNKSR2 WILD-TYPE" "CNKSR2 WILD-TYPE" "CNKSR2 WILD-TYPE" 
      TCGA-91-6828       TCGA-91-6829       TCGA-91-6831       TCGA-91-6835 
"CNKSR2 WILD-TYPE"   "CNKSR2 MUTATED"   "CNKSR2 MUTATED" "CNKSR2 WILD-TYPE" 
      TCGA-91-6836 
"CNKSR2 WILD-TYPE" 
      TCGA-05-4249       TCGA-05-4250       TCGA-05-4382       TCGA-05-4384 
"CNKSR2 WILD-TYPE" "CNKSR2 WILD-TYPE" "CNKSR2 WILD-TYPE" "CNKSR2 WILD-TYPE" 
      TCGA-05-4390       TCGA-05-4396       TCGA-05-4397       TCGA-05-4398 
"CNKSR2 WILD-TYPE"   "CNKSR2 MUTATED" "CNKSR2 WILD-TYPE" "CNKSR2 WILD-TYPE" 
      TCGA-05-4402       TCGA-05-4405       TCGA-05-4415       TCGA-05-4417 
"CNKSR2 WILD-TYPE" "CNKSR2 WILD-TYPE" "CNKSR2 WILD-TYPE" "CNKSR2 WILD-TYPE" 
      TCGA-05-4418       TCGA-05-4420       TCGA-05-4424       TCGA-05-4426 
"CNKSR2 WILD-TYPE" "CNKSR2 WILD-TYPE" "CNKSR2 WILD-TYPE" "CNKSR2 WILD-TYPE" 
      TCGA-05-4427       TCGA-05-4430       TCGA-05-4432       TCGA-05-4433 
"CNKSR2 WILD-TYPE" "CNKSR2 WILD-TYPE" "CNKSR2 WILD-TYPE" "CNKSR2 WILD-TYPE" 
      TCGA-05-4434       TCGA-05-5420       TCGA-05-5423       TCGA-05-5425 
"CNKSR2 WILD-TYPE" "CNKSR2 WILD-TYPE" "CNKSR2 WILD-TYPE" "CNKSR2 WILD-TYPE" 
      TCGA-05-5429       TCGA-05-5715       TCGA-35-3615       TCGA-35-4122 
"CNKSR2 WILD-TYPE" "CNKSR2 WILD-TYPE" "CNKSR2 WILD-TYPE" "CNKSR2 WILD-TYPE" 
      TCGA-35-4123       TCGA-35-5375       TCGA-38-4625       TCGA-38-4626 
"CNKSR2 WILD-TYPE" "CNKSR2 WILD-TYPE" "CNKSR2 WILD-TYPE" "CNKSR2 WILD-TYPE" 
      TCGA-38-4627       TCGA-38-4628       TCGA-38-4629       TCGA-38-4630 
"CNKSR2 WILD-TYPE" "CNKSR2 WILD-TYPE" "CNKSR2 WILD-TYPE" "CNKSR2 WILD-TYPE" 
      TCGA-38-4631       TCGA-38-4632       TCGA-38-6178       TCGA-44-2655 
  "CNKSR2 MUTATED" "CNKSR2 WILD-TYPE" "CNKSR2 WILD-TYPE" "CNKSR2 WILD-TYPE" 
      TCGA-44-2656       TCGA-44-2657       TCGA-44-2659       TCGA-44-2661 
"CNKSR2 WILD-TYPE" "CNKSR2 WILD-TYPE" "CNKSR2 WILD-TYPE" "CNKSR2 WILD-TYPE" 
      TCGA-44-2662       TCGA-44-2665       TCGA-44-2666       TCGA-44-2668 
"CNKSR2 WILD-TYPE" "CNKSR2 WILD-TYPE" "CNKSR2 WILD-TYPE" "CNKSR2 WILD-TYPE" 
      TCGA-44-3396       TCGA-44-3398       TCGA-44-3918       TCGA-44-3919 
"CNKSR2 WILD-TYPE" "CNKSR2 WILD-TYPE" "CNKSR2 WILD-TYPE" "CNKSR2 WILD-TYPE" 
      TCGA-44-4112       TCGA-44-5643       TCGA-44-5645       TCGA-44-6144 
"CNKSR2 WILD-TYPE" "CNKSR2 WILD-TYPE" "CNKSR2 WILD-TYPE" "CNKSR2 WILD-TYPE" 
      TCGA-44-6145       TCGA-44-6146       TCGA-44-6147       TCGA-44-6148 
"CNKSR2 WILD-TYPE" "CNKSR2 WILD-TYPE" "CNKSR2 WILD-TYPE" "CNKSR2 WILD-TYPE" 
      TCGA-44-6774       TCGA-44-6775       TCGA-44-6776       TCGA-44-6777 
"CNKSR2 WILD-TYPE" "CNKSR2 WILD-TYPE" "CNKSR2 WILD-TYPE" "CNKSR2 WILD-TYPE" 
      TCGA-44-6778       TCGA-44-6779       TCGA-49-4486       TCGA-49-4487 
"CNKSR2 WILD-TYPE" "CNKSR2 WILD-TYPE" "CNKSR2 WILD-TYPE" "CNKSR2 WILD-TYPE" 
      TCGA-49-4488       TCGA-49-4490       TCGA-49-4494       TCGA-49-4501 
"CNKSR2 WILD-TYPE" "CNKSR2 WILD-TYPE" "CNKSR2 WILD-TYPE" "CNKSR2 WILD-TYPE" 
      TCGA-49-4505       TCGA-49-4506       TCGA-49-4507       TCGA-49-4510 
"CNKSR2 WILD-TYPE" "CNKSR2 WILD-TYPE" "CNKSR2 WILD-TYPE" "CNKSR2 WILD-TYPE" 
      TCGA-49-4512       TCGA-49-4514       TCGA-49-6742       TCGA-49-6743 
"CNKSR2 WILD-TYPE"   "CNKSR2 MUTATED" "CNKSR2 WILD-TYPE"   "CNKSR2 MUTATED" 
      TCGA-49-6744       TCGA-49-6745       TCGA-50-5044       TCGA-50-5045 
  "CNKSR2 MUTATED" "CNKSR2 WILD-TYPE" "CNKSR2 WILD-TYPE" "CNKSR2 WILD-TYPE" 
      TCGA-50-5049       TCGA-50-5051       TCGA-50-5055       TCGA-50-5066 
"CNKSR2 WILD-TYPE" "CNKSR2 WILD-TYPE" "CNKSR2 WILD-TYPE" "CNKSR2 WILD-TYPE" 
      TCGA-50-5068       TCGA-50-5072       TCGA-50-5930       TCGA-50-5931 
"CNKSR2 WILD-TYPE" "CNKSR2 WILD-TYPE" "CNKSR2 WILD-TYPE" "CNKSR2 WILD-TYPE" 
      TCGA-50-5932       TCGA-50-5933       TCGA-50-5935       TCGA-50-5936 
"CNKSR2 WILD-TYPE" "CNKSR2 WILD-TYPE" "CNKSR2 WILD-TYPE" "CNKSR2 WILD-TYPE" 
      TCGA-50-5939       TCGA-50-5941       TCGA-50-5942       TCGA-50-5944 
"CNKSR2 WILD-TYPE" "CNKSR2 WILD-TYPE" "CNKSR2 WILD-TYPE" "CNKSR2 WILD-TYPE" 
      TCGA-50-5946       TCGA-50-6590       TCGA-50-6591       TCGA-50-6592 
"CNKSR2 WILD-TYPE" "CNKSR2 WILD-TYPE" "CNKSR2 WILD-TYPE" "CNKSR2 WILD-TYPE" 
      TCGA-50-6593       TCGA-50-6594       TCGA-50-6595       TCGA-50-6597 
"CNKSR2 WILD-TYPE" "CNKSR2 WILD-TYPE" "CNKSR2 WILD-TYPE" "CNKSR2 WILD-TYPE" 
      TCGA-55-1592       TCGA-55-1594       TCGA-55-1595       TCGA-55-1596 
"CNKSR2 WILD-TYPE" "CNKSR2 WILD-TYPE" "CNKSR2 WILD-TYPE" "CNKSR2 WILD-TYPE" 
      TCGA-55-5899       TCGA-55-6543       TCGA-55-6642       TCGA-55-6712 
"CNKSR2 WILD-TYPE" "CNKSR2 WILD-TYPE" "CNKSR2 WILD-TYPE" "CNKSR2 WILD-TYPE" 
      TCGA-64-1676       TCGA-64-1677       TCGA-64-1678       TCGA-64-1680 
"CNKSR2 WILD-TYPE" "CNKSR2 WILD-TYPE" "CNKSR2 WILD-TYPE" "CNKSR2 WILD-TYPE" 
      TCGA-64-5774       TCGA-64-5775       TCGA-64-5778       TCGA-64-5779 
"CNKSR2 WILD-TYPE" "CNKSR2 WILD-TYPE" "CNKSR2 WILD-TYPE" "CNKSR2 WILD-TYPE" 
      TCGA-64-5781       TCGA-64-5815       TCGA-67-3770       TCGA-67-3771 
"CNKSR2 WILD-TYPE" "CNKSR2 WILD-TYPE" "CNKSR2 WILD-TYPE" "CNKSR2 WILD-TYPE" 
      TCGA-67-3772       TCGA-67-3773       TCGA-67-3774       TCGA-67-6215 
"CNKSR2 WILD-TYPE" "CNKSR2 WILD-TYPE" "CNKSR2 WILD-TYPE" "CNKSR2 WILD-TYPE" 
      TCGA-67-6216       TCGA-67-6217       TCGA-71-6725       TCGA-73-4658 
"CNKSR2 WILD-TYPE" "CNKSR2 WILD-TYPE" "CNKSR2 WILD-TYPE" "CNKSR2 WILD-TYPE" 
      TCGA-73-4659       TCGA-73-4662       TCGA-73-4666       TCGA-73-4668 
"CNKSR2 WILD-TYPE" "CNKSR2 WILD-TYPE" "CNKSR2 WILD-TYPE" "CNKSR2 WILD-TYPE" 
      TCGA-73-4670       TCGA-73-4675       TCGA-73-4676       TCGA-73-4677 
"CNKSR2 WILD-TYPE" "CNKSR2 WILD-TYPE" "CNKSR2 WILD-TYPE" "CNKSR2 WILD-TYPE" 
      TCGA-91-6828       TCGA-91-6829       TCGA-91-6831       TCGA-91-6835 
"CNKSR2 WILD-TYPE"   "CNKSR2 MUTATED"   "CNKSR2 MUTATED" "CNKSR2 WILD-TYPE" 
      TCGA-91-6836 
"CNKSR2 WILD-TYPE" 
[1] "hr=" "1.4"
D245V2, continuous
D245V3, binary
[1] "tbl2"
                  cls
clus               [,1] [,2]
  CNKSR2 MUTATED      4    3
  CNKSR2 WILD-TYPE   89   76
        clus
vv       CNKSR2 MUTATED CNKSR2 WILD-TYPE
  FEMALE              4               89
  MALE                3               76
D245V4, continuous
D245V5, multiclass
D245V6, multiclass
    clus
vv   CNKSR2 MUTATED CNKSR2 WILD-TYPE
  T1              2               39
  T2              4              104
  T3              0               14
  T4              1                7
D245V7, multiclass
       clus
vv      CNKSR2 MUTATED CNKSR2 WILD-TYPE
  N0                 4               91
  N1                 2               35
  N2+N3              1               34
D245V8, multiclass
    clus
vv   CNKSR2 MUTATED CNKSR2 WILD-TYPE
  M0              3              134
  M1              0                9
  MX              4               18
D245V9, multiclass
     clus
vv    CNKSR2 MUTATED CNKSR2 WILD-TYPE
  I                4               84
  II               1               32
  III              2               37
  IV               0                9
D245V10, binary
[1] "tbl2"
                  cls
clus               [,1] [,2]
  CNKSR2 MUTATED      0    7
  CNKSR2 WILD-TYPE   16  149
     clus
vv    CNKSR2 MUTATED CNKSR2 WILD-TYPE
  NO               0               16
  YES              7              149
D245V11, continuous
D245V12, continuous
[1] "Remove cluster labels:" "CNKSR2 MUTATED"        
clus
  CNKSR2 MUTATED CNKSR2 WILD-TYPE 
               2               80 
      TCGA-05-4384       TCGA-05-4390       TCGA-05-4403       TCGA-05-4405 
"CNKSR2 WILD-TYPE" "CNKSR2 WILD-TYPE" "CNKSR2 WILD-TYPE" "CNKSR2 WILD-TYPE" 
      TCGA-05-4410       TCGA-05-4415       TCGA-05-4417       TCGA-05-4424 
"CNKSR2 WILD-TYPE" "CNKSR2 WILD-TYPE" "CNKSR2 WILD-TYPE" "CNKSR2 WILD-TYPE" 
      TCGA-05-4427       TCGA-05-4433       TCGA-05-5420       TCGA-05-5423 
"CNKSR2 WILD-TYPE" "CNKSR2 WILD-TYPE" "CNKSR2 WILD-TYPE" "CNKSR2 WILD-TYPE" 
      TCGA-05-5425       TCGA-05-5428       TCGA-35-4122       TCGA-35-4123 
"CNKSR2 WILD-TYPE" "CNKSR2 WILD-TYPE" "CNKSR2 WILD-TYPE" "CNKSR2 WILD-TYPE" 
      TCGA-35-5375       TCGA-38-4629       TCGA-38-4632       TCGA-44-2655 
"CNKSR2 WILD-TYPE" "CNKSR2 WILD-TYPE" "CNKSR2 WILD-TYPE" "CNKSR2 WILD-TYPE" 
      TCGA-44-2656       TCGA-44-2657       TCGA-44-2659       TCGA-44-2662 
"CNKSR2 WILD-TYPE" "CNKSR2 WILD-TYPE" "CNKSR2 WILD-TYPE" "CNKSR2 WILD-TYPE" 
      TCGA-44-2668       TCGA-44-3398       TCGA-44-3918       TCGA-44-4112 
"CNKSR2 WILD-TYPE" "CNKSR2 WILD-TYPE" "CNKSR2 WILD-TYPE" "CNKSR2 WILD-TYPE" 
      TCGA-44-5645       TCGA-44-6145       TCGA-44-6146       TCGA-44-6147 
"CNKSR2 WILD-TYPE" "CNKSR2 WILD-TYPE" "CNKSR2 WILD-TYPE" "CNKSR2 WILD-TYPE" 
      TCGA-44-6148       TCGA-44-6775       TCGA-44-6776       TCGA-44-6777 
"CNKSR2 WILD-TYPE" "CNKSR2 WILD-TYPE" "CNKSR2 WILD-TYPE" "CNKSR2 WILD-TYPE" 
      TCGA-44-6778       TCGA-44-6779       TCGA-49-4486       TCGA-49-4488 
"CNKSR2 WILD-TYPE" "CNKSR2 WILD-TYPE" "CNKSR2 WILD-TYPE" "CNKSR2 WILD-TYPE" 
      TCGA-49-4494       TCGA-49-4505       TCGA-49-4507       TCGA-50-5051 
"CNKSR2 WILD-TYPE" "CNKSR2 WILD-TYPE" "CNKSR2 WILD-TYPE" "CNKSR2 WILD-TYPE" 
      TCGA-50-5072       TCGA-50-5939       TCGA-50-5942       TCGA-50-5946 
"CNKSR2 WILD-TYPE" "CNKSR2 WILD-TYPE" "CNKSR2 WILD-TYPE" "CNKSR2 WILD-TYPE" 
      TCGA-50-6590       TCGA-50-6594       TCGA-50-6595       TCGA-55-1592 
"CNKSR2 WILD-TYPE" "CNKSR2 WILD-TYPE" "CNKSR2 WILD-TYPE" "CNKSR2 WILD-TYPE" 
      TCGA-55-1595       TCGA-55-6543       TCGA-55-6712       TCGA-64-1678 
"CNKSR2 WILD-TYPE" "CNKSR2 WILD-TYPE" "CNKSR2 WILD-TYPE" "CNKSR2 WILD-TYPE" 
      TCGA-64-1680       TCGA-64-5774       TCGA-64-5778       TCGA-64-5779 
"CNKSR2 WILD-TYPE" "CNKSR2 WILD-TYPE" "CNKSR2 WILD-TYPE" "CNKSR2 WILD-TYPE" 
      TCGA-64-5781       TCGA-64-5815       TCGA-67-6217       TCGA-73-4659 
"CNKSR2 WILD-TYPE" "CNKSR2 WILD-TYPE" "CNKSR2 WILD-TYPE" "CNKSR2 WILD-TYPE" 
      TCGA-73-4662       TCGA-73-4666       TCGA-73-4668       TCGA-73-4670 
"CNKSR2 WILD-TYPE" "CNKSR2 WILD-TYPE" "CNKSR2 WILD-TYPE" "CNKSR2 WILD-TYPE" 
      TCGA-73-4675       TCGA-73-4676       TCGA-73-4677       TCGA-75-5122 
"CNKSR2 WILD-TYPE" "CNKSR2 WILD-TYPE" "CNKSR2 WILD-TYPE" "CNKSR2 WILD-TYPE" 
      TCGA-75-5125       TCGA-75-5126       TCGA-75-5146       TCGA-75-6206 
"CNKSR2 WILD-TYPE" "CNKSR2 WILD-TYPE" "CNKSR2 WILD-TYPE" "CNKSR2 WILD-TYPE" 
      TCGA-75-6207       TCGA-80-5611       TCGA-91-6828       TCGA-91-6835 
"CNKSR2 WILD-TYPE" "CNKSR2 WILD-TYPE" "CNKSR2 WILD-TYPE" "CNKSR2 WILD-TYPE" 
D245V13, multiclass
                                             clus
vv                                            CNKSR2 MUTATED CNKSR2 WILD-TYPE
  CURRENT REFORMED SMOKER FOR < OR = 15 YEARS              4               58
  CURRENT REFORMED SMOKER FOR > 15 YEARS                   2               44
  CURRENT SMOKER                                           1               27
  LIFELONG NON-SMOKER                                      0               24
D245V14, continuous
[1] "Remove cluster labels:" "CNKSR2 MUTATED"        
clus
  CNKSR2 MUTATED CNKSR2 WILD-TYPE 
               2               66 
      TCGA-05-4384       TCGA-05-4390       TCGA-05-4405       TCGA-05-4410 
"CNKSR2 WILD-TYPE" "CNKSR2 WILD-TYPE" "CNKSR2 WILD-TYPE" "CNKSR2 WILD-TYPE" 
      TCGA-05-4415       TCGA-05-4417       TCGA-05-4424       TCGA-05-4427 
"CNKSR2 WILD-TYPE" "CNKSR2 WILD-TYPE" "CNKSR2 WILD-TYPE" "CNKSR2 WILD-TYPE" 
      TCGA-05-4433       TCGA-05-5420       TCGA-05-5423       TCGA-05-5425 
"CNKSR2 WILD-TYPE" "CNKSR2 WILD-TYPE" "CNKSR2 WILD-TYPE" "CNKSR2 WILD-TYPE" 
      TCGA-05-5428       TCGA-35-4122       TCGA-35-4123       TCGA-35-5375 
"CNKSR2 WILD-TYPE" "CNKSR2 WILD-TYPE" "CNKSR2 WILD-TYPE" "CNKSR2 WILD-TYPE" 
      TCGA-38-4625       TCGA-38-4626       TCGA-44-2655       TCGA-44-2656 
"CNKSR2 WILD-TYPE" "CNKSR2 WILD-TYPE" "CNKSR2 WILD-TYPE" "CNKSR2 WILD-TYPE" 
      TCGA-44-2657       TCGA-44-2659       TCGA-44-2662       TCGA-44-2666 
"CNKSR2 WILD-TYPE" "CNKSR2 WILD-TYPE" "CNKSR2 WILD-TYPE" "CNKSR2 WILD-TYPE" 
      TCGA-44-2668       TCGA-44-3396       TCGA-44-3398       TCGA-44-3918 
"CNKSR2 WILD-TYPE" "CNKSR2 WILD-TYPE" "CNKSR2 WILD-TYPE" "CNKSR2 WILD-TYPE" 
      TCGA-44-4112       TCGA-44-5645       TCGA-44-6144       TCGA-44-6145 
"CNKSR2 WILD-TYPE" "CNKSR2 WILD-TYPE" "CNKSR2 WILD-TYPE" "CNKSR2 WILD-TYPE" 
      TCGA-44-6147       TCGA-44-6148       TCGA-44-6774       TCGA-44-6775 
"CNKSR2 WILD-TYPE" "CNKSR2 WILD-TYPE" "CNKSR2 WILD-TYPE" "CNKSR2 WILD-TYPE" 
      TCGA-44-6776       TCGA-44-6777       TCGA-44-6778       TCGA-44-6779 
"CNKSR2 WILD-TYPE" "CNKSR2 WILD-TYPE" "CNKSR2 WILD-TYPE" "CNKSR2 WILD-TYPE" 
      TCGA-49-4486       TCGA-49-4494       TCGA-49-4505       TCGA-55-1592 
"CNKSR2 WILD-TYPE" "CNKSR2 WILD-TYPE" "CNKSR2 WILD-TYPE" "CNKSR2 WILD-TYPE" 
      TCGA-55-1594       TCGA-55-1595       TCGA-55-1596       TCGA-55-5899 
"CNKSR2 WILD-TYPE" "CNKSR2 WILD-TYPE" "CNKSR2 WILD-TYPE" "CNKSR2 WILD-TYPE" 
      TCGA-55-6642       TCGA-55-6712       TCGA-64-1677       TCGA-64-1678 
"CNKSR2 WILD-TYPE" "CNKSR2 WILD-TYPE" "CNKSR2 WILD-TYPE" "CNKSR2 WILD-TYPE" 
      TCGA-64-1680       TCGA-64-5774       TCGA-64-5775       TCGA-64-5778 
"CNKSR2 WILD-TYPE" "CNKSR2 WILD-TYPE" "CNKSR2 WILD-TYPE" "CNKSR2 WILD-TYPE" 
      TCGA-64-5779       TCGA-64-5781       TCGA-73-4659       TCGA-73-4662 
"CNKSR2 WILD-TYPE" "CNKSR2 WILD-TYPE" "CNKSR2 WILD-TYPE" "CNKSR2 WILD-TYPE" 
      TCGA-73-4666       TCGA-73-4668       TCGA-73-4670       TCGA-73-4675 
"CNKSR2 WILD-TYPE" "CNKSR2 WILD-TYPE" "CNKSR2 WILD-TYPE" "CNKSR2 WILD-TYPE" 
      TCGA-73-4676       TCGA-91-6836 
"CNKSR2 WILD-TYPE" "CNKSR2 WILD-TYPE" 

Clustering(246) Variable = HAS2 MUTATION ANALYSIS
D246V1, survival
                sevent
clus2             0  1
  HAS2 MUTATED    6  3
  HAS2 WILD-TYPE 93 47
  HAS2 MUTATED HAS2 WILD-TYPE 
             9            140 
  HAS2 MUTATED HAS2 WILD-TYPE 
             3             47 
$`HAS2 MUTATED`
TCGA-05-4250 TCGA-05-4417 TCGA-38-4625 TCGA-44-2656 TCGA-49-6743 TCGA-50-6594 
        3.98        14.93        47.61        19.10        12.13        12.16 
TCGA-55-1592 TCGA-55-6543 TCGA-91-6828 
       23.05         0.07         1.22 

$`HAS2 WILD-TYPE`
TCGA-05-4249 TCGA-05-4382 TCGA-05-4384 TCGA-05-4390 TCGA-05-4396 TCGA-05-4397 
       38.07        19.92        14.01        37.02         9.96        24.03 
TCGA-05-4398 TCGA-05-4402 TCGA-05-4405 TCGA-05-4415 TCGA-05-4418 TCGA-05-4420 
       47.05         8.02        20.05         2.96         8.98        29.95 
TCGA-05-4424 TCGA-05-4426 TCGA-05-4427 TCGA-05-4430 TCGA-05-4432 TCGA-05-4433 
       30.02        26.01        26.01        25.02        25.02        24.00 
TCGA-05-4434 TCGA-05-5420 TCGA-05-5423 TCGA-05-5425 TCGA-05-5429 TCGA-05-5715 
       15.02         1.02         4.96         2.96         0.99         2.04 
TCGA-35-3615 TCGA-35-4122 TCGA-35-4123 TCGA-35-5375 TCGA-38-4626 TCGA-38-4627 
        0.46         7.36         5.95         8.68        85.32        37.71 
TCGA-38-4628 TCGA-38-4629 TCGA-38-4630 TCGA-38-4631 TCGA-38-4632 TCGA-38-6178 
       49.02        28.37        35.28        11.64        44.61         5.19 
TCGA-44-2655 TCGA-44-2657 TCGA-44-2659 TCGA-44-2661 TCGA-44-2662 TCGA-44-2665 
       18.87        13.15        17.39         3.39        15.78        13.15 
TCGA-44-2666 TCGA-44-2668 TCGA-44-3396 TCGA-44-3398 TCGA-44-3918 TCGA-44-3919 
        3.19         8.09        10.22         8.32         6.44         6.21 
TCGA-44-4112 TCGA-44-5643 TCGA-44-5645 TCGA-44-6144 TCGA-44-6145 TCGA-44-6146 
        4.60         3.48         6.84         0.30         3.35         9.93 
TCGA-44-6147 TCGA-44-6148 TCGA-44-6774 TCGA-44-6775 TCGA-44-6776 TCGA-44-6777 
        7.76         3.12         5.42         2.70        63.72        32.45 
TCGA-44-6778 TCGA-44-6779 TCGA-49-4486 TCGA-49-4487 TCGA-49-4488 TCGA-49-4490 
       36.49        16.41        76.21        28.11        28.57        12.66 
TCGA-49-4494 TCGA-49-4501 TCGA-49-4505 TCGA-49-4506 TCGA-49-4507 TCGA-49-4510 
       35.54        46.72        14.07        32.84         8.81        29.46 
TCGA-49-4512 TCGA-49-4514 TCGA-49-6742 TCGA-49-6744 TCGA-49-6745 TCGA-50-5044 
       29.75        43.20        15.02        12.99         4.93        20.48 
TCGA-50-5045 TCGA-50-5049 TCGA-50-5051 TCGA-50-5055 TCGA-50-5066 TCGA-50-5068 
       71.47        48.82        14.96        25.81         9.76        49.28 
TCGA-50-5072 TCGA-50-5930 TCGA-50-5931 TCGA-50-5932 TCGA-50-5933 TCGA-50-5935 
        8.05         9.27         8.78        35.87        77.88        21.47 
TCGA-50-5936 TCGA-50-5939 TCGA-50-5941 TCGA-50-5942 TCGA-50-5944 TCGA-50-5946 
        8.45        15.12         9.37         4.44        12.26        11.47 
TCGA-50-6590 TCGA-50-6591 TCGA-50-6592 TCGA-50-6593 TCGA-50-6595 TCGA-50-6597 
       42.31         3.88        25.51        11.05         6.21        33.37 
TCGA-55-1594 TCGA-55-1595 TCGA-55-1596 TCGA-55-5899 TCGA-55-6642 TCGA-55-6712 
       38.73        48.62        45.17         2.86        32.61         0.79 
TCGA-64-1676 TCGA-64-1677 TCGA-64-1678 TCGA-64-1680 TCGA-64-5774 TCGA-64-5775 
       56.81        20.65        39.09        37.02        83.84         0.10 
TCGA-64-5778 TCGA-64-5779 TCGA-64-5781 TCGA-64-5815 TCGA-67-3770 TCGA-67-3771 
       30.44        16.67        39.52         7.33         0.99         1.97 
TCGA-67-3772 TCGA-67-3773 TCGA-67-3774 TCGA-67-6215 TCGA-67-6216 TCGA-67-6217 
        0.59         2.04         0.59         0.89         0.69        13.87 
TCGA-71-6725 TCGA-73-4658 TCGA-73-4659 TCGA-73-4662 TCGA-73-4666 TCGA-73-4668 
        2.01        52.57        23.38        29.95        20.28        15.35 
TCGA-73-4670 TCGA-73-4675 TCGA-73-4676 TCGA-73-4677 TCGA-91-6829 TCGA-91-6831 
        0.46         1.32         4.01         1.25        41.33         1.28 
TCGA-91-6835 TCGA-91-6836 
        1.15         0.36 

  HAS2 MUTATED HAS2 WILD-TYPE 
          0.07           0.10 
  HAS2 MUTATED HAS2 WILD-TYPE 
         47.61          85.32 
  HAS2 MUTATED HAS2 WILD-TYPE 
         12.16          13.94 
[1] "0.1 - 47.6 (12.2)" "0.1 - 85.3 (13.9)"
    TCGA-05-4249     TCGA-05-4250     TCGA-05-4382     TCGA-05-4384 
"HAS2 WILD-TYPE"   "HAS2 MUTATED" "HAS2 WILD-TYPE" "HAS2 WILD-TYPE" 
    TCGA-05-4390     TCGA-05-4396     TCGA-05-4397     TCGA-05-4398 
"HAS2 WILD-TYPE" "HAS2 WILD-TYPE" "HAS2 WILD-TYPE" "HAS2 WILD-TYPE" 
    TCGA-05-4402     TCGA-05-4405     TCGA-05-4415     TCGA-05-4417 
"HAS2 WILD-TYPE" "HAS2 WILD-TYPE" "HAS2 WILD-TYPE"   "HAS2 MUTATED" 
    TCGA-05-4418     TCGA-05-4420     TCGA-05-4424     TCGA-05-4426 
"HAS2 WILD-TYPE" "HAS2 WILD-TYPE" "HAS2 WILD-TYPE" "HAS2 WILD-TYPE" 
    TCGA-05-4427     TCGA-05-4430     TCGA-05-4432     TCGA-05-4433 
"HAS2 WILD-TYPE" "HAS2 WILD-TYPE" "HAS2 WILD-TYPE" "HAS2 WILD-TYPE" 
    TCGA-05-4434     TCGA-05-5420     TCGA-05-5423     TCGA-05-5425 
"HAS2 WILD-TYPE" "HAS2 WILD-TYPE" "HAS2 WILD-TYPE" "HAS2 WILD-TYPE" 
    TCGA-05-5429     TCGA-05-5715     TCGA-35-3615     TCGA-35-4122 
"HAS2 WILD-TYPE" "HAS2 WILD-TYPE" "HAS2 WILD-TYPE" "HAS2 WILD-TYPE" 
    TCGA-35-4123     TCGA-35-5375     TCGA-38-4625     TCGA-38-4626 
"HAS2 WILD-TYPE" "HAS2 WILD-TYPE"   "HAS2 MUTATED" "HAS2 WILD-TYPE" 
    TCGA-38-4627     TCGA-38-4628     TCGA-38-4629     TCGA-38-4630 
"HAS2 WILD-TYPE" "HAS2 WILD-TYPE" "HAS2 WILD-TYPE" "HAS2 WILD-TYPE" 
    TCGA-38-4631     TCGA-38-4632     TCGA-38-6178     TCGA-44-2655 
"HAS2 WILD-TYPE" "HAS2 WILD-TYPE" "HAS2 WILD-TYPE" "HAS2 WILD-TYPE" 
    TCGA-44-2656     TCGA-44-2657     TCGA-44-2659     TCGA-44-2661 
  "HAS2 MUTATED" "HAS2 WILD-TYPE" "HAS2 WILD-TYPE" "HAS2 WILD-TYPE" 
    TCGA-44-2662     TCGA-44-2665     TCGA-44-2666     TCGA-44-2668 
"HAS2 WILD-TYPE" "HAS2 WILD-TYPE" "HAS2 WILD-TYPE" "HAS2 WILD-TYPE" 
    TCGA-44-3396     TCGA-44-3398     TCGA-44-3918     TCGA-44-3919 
"HAS2 WILD-TYPE" "HAS2 WILD-TYPE" "HAS2 WILD-TYPE" "HAS2 WILD-TYPE" 
    TCGA-44-4112     TCGA-44-5643     TCGA-44-5645     TCGA-44-6144 
"HAS2 WILD-TYPE" "HAS2 WILD-TYPE" "HAS2 WILD-TYPE" "HAS2 WILD-TYPE" 
    TCGA-44-6145     TCGA-44-6146     TCGA-44-6147     TCGA-44-6148 
"HAS2 WILD-TYPE" "HAS2 WILD-TYPE" "HAS2 WILD-TYPE" "HAS2 WILD-TYPE" 
    TCGA-44-6774     TCGA-44-6775     TCGA-44-6776     TCGA-44-6777 
"HAS2 WILD-TYPE" "HAS2 WILD-TYPE" "HAS2 WILD-TYPE" "HAS2 WILD-TYPE" 
    TCGA-44-6778     TCGA-44-6779     TCGA-49-4486     TCGA-49-4487 
"HAS2 WILD-TYPE" "HAS2 WILD-TYPE" "HAS2 WILD-TYPE" "HAS2 WILD-TYPE" 
    TCGA-49-4488     TCGA-49-4490     TCGA-49-4494     TCGA-49-4501 
"HAS2 WILD-TYPE" "HAS2 WILD-TYPE" "HAS2 WILD-TYPE" "HAS2 WILD-TYPE" 
    TCGA-49-4505     TCGA-49-4506     TCGA-49-4507     TCGA-49-4510 
"HAS2 WILD-TYPE" "HAS2 WILD-TYPE" "HAS2 WILD-TYPE" "HAS2 WILD-TYPE" 
    TCGA-49-4512     TCGA-49-4514     TCGA-49-6742     TCGA-49-6743 
"HAS2 WILD-TYPE" "HAS2 WILD-TYPE" "HAS2 WILD-TYPE"   "HAS2 MUTATED" 
    TCGA-49-6744     TCGA-49-6745     TCGA-50-5044     TCGA-50-5045 
"HAS2 WILD-TYPE" "HAS2 WILD-TYPE" "HAS2 WILD-TYPE" "HAS2 WILD-TYPE" 
    TCGA-50-5049     TCGA-50-5051     TCGA-50-5055     TCGA-50-5066 
"HAS2 WILD-TYPE" "HAS2 WILD-TYPE" "HAS2 WILD-TYPE" "HAS2 WILD-TYPE" 
    TCGA-50-5068     TCGA-50-5072     TCGA-50-5930     TCGA-50-5931 
"HAS2 WILD-TYPE" "HAS2 WILD-TYPE" "HAS2 WILD-TYPE" "HAS2 WILD-TYPE" 
    TCGA-50-5932     TCGA-50-5933     TCGA-50-5935     TCGA-50-5936 
"HAS2 WILD-TYPE" "HAS2 WILD-TYPE" "HAS2 WILD-TYPE" "HAS2 WILD-TYPE" 
    TCGA-50-5939     TCGA-50-5941     TCGA-50-5942     TCGA-50-5944 
"HAS2 WILD-TYPE" "HAS2 WILD-TYPE" "HAS2 WILD-TYPE" "HAS2 WILD-TYPE" 
    TCGA-50-5946     TCGA-50-6590     TCGA-50-6591     TCGA-50-6592 
"HAS2 WILD-TYPE" "HAS2 WILD-TYPE" "HAS2 WILD-TYPE" "HAS2 WILD-TYPE" 
    TCGA-50-6593     TCGA-50-6594     TCGA-50-6595     TCGA-50-6597 
"HAS2 WILD-TYPE"   "HAS2 MUTATED" "HAS2 WILD-TYPE" "HAS2 WILD-TYPE" 
    TCGA-55-1592     TCGA-55-1594     TCGA-55-1595     TCGA-55-1596 
  "HAS2 MUTATED" "HAS2 WILD-TYPE" "HAS2 WILD-TYPE" "HAS2 WILD-TYPE" 
    TCGA-55-5899     TCGA-55-6543     TCGA-55-6642     TCGA-55-6712 
"HAS2 WILD-TYPE"   "HAS2 MUTATED" "HAS2 WILD-TYPE" "HAS2 WILD-TYPE" 
    TCGA-64-1676     TCGA-64-1677     TCGA-64-1678     TCGA-64-1680 
"HAS2 WILD-TYPE" "HAS2 WILD-TYPE" "HAS2 WILD-TYPE" "HAS2 WILD-TYPE" 
    TCGA-64-5774     TCGA-64-5775     TCGA-64-5778     TCGA-64-5779 
"HAS2 WILD-TYPE" "HAS2 WILD-TYPE" "HAS2 WILD-TYPE" "HAS2 WILD-TYPE" 
    TCGA-64-5781     TCGA-64-5815     TCGA-67-3770     TCGA-67-3771 
"HAS2 WILD-TYPE" "HAS2 WILD-TYPE" "HAS2 WILD-TYPE" "HAS2 WILD-TYPE" 
    TCGA-67-3772     TCGA-67-3773     TCGA-67-3774     TCGA-67-6215 
"HAS2 WILD-TYPE" "HAS2 WILD-TYPE" "HAS2 WILD-TYPE" "HAS2 WILD-TYPE" 
    TCGA-67-6216     TCGA-67-6217     TCGA-71-6725     TCGA-73-4658 
"HAS2 WILD-TYPE" "HAS2 WILD-TYPE" "HAS2 WILD-TYPE" "HAS2 WILD-TYPE" 
    TCGA-73-4659     TCGA-73-4662     TCGA-73-4666     TCGA-73-4668 
"HAS2 WILD-TYPE" "HAS2 WILD-TYPE" "HAS2 WILD-TYPE" "HAS2 WILD-TYPE" 
    TCGA-73-4670     TCGA-73-4675     TCGA-73-4676     TCGA-73-4677 
"HAS2 WILD-TYPE" "HAS2 WILD-TYPE" "HAS2 WILD-TYPE" "HAS2 WILD-TYPE" 
    TCGA-91-6828     TCGA-91-6829     TCGA-91-6831     TCGA-91-6835 
  "HAS2 MUTATED" "HAS2 WILD-TYPE" "HAS2 WILD-TYPE" "HAS2 WILD-TYPE" 
    TCGA-91-6836 
"HAS2 WILD-TYPE" 
    TCGA-05-4249     TCGA-05-4250     TCGA-05-4382     TCGA-05-4384 
"HAS2 WILD-TYPE"   "HAS2 MUTATED" "HAS2 WILD-TYPE" "HAS2 WILD-TYPE" 
    TCGA-05-4390     TCGA-05-4396     TCGA-05-4397     TCGA-05-4398 
"HAS2 WILD-TYPE" "HAS2 WILD-TYPE" "HAS2 WILD-TYPE" "HAS2 WILD-TYPE" 
    TCGA-05-4402     TCGA-05-4405     TCGA-05-4415     TCGA-05-4417 
"HAS2 WILD-TYPE" "HAS2 WILD-TYPE" "HAS2 WILD-TYPE"   "HAS2 MUTATED" 
    TCGA-05-4418     TCGA-05-4420     TCGA-05-4424     TCGA-05-4426 
"HAS2 WILD-TYPE" "HAS2 WILD-TYPE" "HAS2 WILD-TYPE" "HAS2 WILD-TYPE" 
    TCGA-05-4427     TCGA-05-4430     TCGA-05-4432     TCGA-05-4433 
"HAS2 WILD-TYPE" "HAS2 WILD-TYPE" "HAS2 WILD-TYPE" "HAS2 WILD-TYPE" 
    TCGA-05-4434     TCGA-05-5420     TCGA-05-5423     TCGA-05-5425 
"HAS2 WILD-TYPE" "HAS2 WILD-TYPE" "HAS2 WILD-TYPE" "HAS2 WILD-TYPE" 
    TCGA-05-5429     TCGA-05-5715     TCGA-35-3615     TCGA-35-4122 
"HAS2 WILD-TYPE" "HAS2 WILD-TYPE" "HAS2 WILD-TYPE" "HAS2 WILD-TYPE" 
    TCGA-35-4123     TCGA-35-5375     TCGA-38-4625     TCGA-38-4626 
"HAS2 WILD-TYPE" "HAS2 WILD-TYPE"   "HAS2 MUTATED" "HAS2 WILD-TYPE" 
    TCGA-38-4627     TCGA-38-4628     TCGA-38-4629     TCGA-38-4630 
"HAS2 WILD-TYPE" "HAS2 WILD-TYPE" "HAS2 WILD-TYPE" "HAS2 WILD-TYPE" 
    TCGA-38-4631     TCGA-38-4632     TCGA-38-6178     TCGA-44-2655 
"HAS2 WILD-TYPE" "HAS2 WILD-TYPE" "HAS2 WILD-TYPE" "HAS2 WILD-TYPE" 
    TCGA-44-2656     TCGA-44-2657     TCGA-44-2659     TCGA-44-2661 
  "HAS2 MUTATED" "HAS2 WILD-TYPE" "HAS2 WILD-TYPE" "HAS2 WILD-TYPE" 
    TCGA-44-2662     TCGA-44-2665     TCGA-44-2666     TCGA-44-2668 
"HAS2 WILD-TYPE" "HAS2 WILD-TYPE" "HAS2 WILD-TYPE" "HAS2 WILD-TYPE" 
    TCGA-44-3396     TCGA-44-3398     TCGA-44-3918     TCGA-44-3919 
"HAS2 WILD-TYPE" "HAS2 WILD-TYPE" "HAS2 WILD-TYPE" "HAS2 WILD-TYPE" 
    TCGA-44-4112     TCGA-44-5643     TCGA-44-5645     TCGA-44-6144 
"HAS2 WILD-TYPE" "HAS2 WILD-TYPE" "HAS2 WILD-TYPE" "HAS2 WILD-TYPE" 
    TCGA-44-6145     TCGA-44-6146     TCGA-44-6147     TCGA-44-6148 
"HAS2 WILD-TYPE" "HAS2 WILD-TYPE" "HAS2 WILD-TYPE" "HAS2 WILD-TYPE" 
    TCGA-44-6774     TCGA-44-6775     TCGA-44-6776     TCGA-44-6777 
"HAS2 WILD-TYPE" "HAS2 WILD-TYPE" "HAS2 WILD-TYPE" "HAS2 WILD-TYPE" 
    TCGA-44-6778     TCGA-44-6779     TCGA-49-4486     TCGA-49-4487 
"HAS2 WILD-TYPE" "HAS2 WILD-TYPE" "HAS2 WILD-TYPE" "HAS2 WILD-TYPE" 
    TCGA-49-4488     TCGA-49-4490     TCGA-49-4494     TCGA-49-4501 
"HAS2 WILD-TYPE" "HAS2 WILD-TYPE" "HAS2 WILD-TYPE" "HAS2 WILD-TYPE" 
    TCGA-49-4505     TCGA-49-4506     TCGA-49-4507     TCGA-49-4510 
"HAS2 WILD-TYPE" "HAS2 WILD-TYPE" "HAS2 WILD-TYPE" "HAS2 WILD-TYPE" 
    TCGA-49-4512     TCGA-49-4514     TCGA-49-6742     TCGA-49-6743 
"HAS2 WILD-TYPE" "HAS2 WILD-TYPE" "HAS2 WILD-TYPE"   "HAS2 MUTATED" 
    TCGA-49-6744     TCGA-49-6745     TCGA-50-5044     TCGA-50-5045 
"HAS2 WILD-TYPE" "HAS2 WILD-TYPE" "HAS2 WILD-TYPE" "HAS2 WILD-TYPE" 
    TCGA-50-5049     TCGA-50-5051     TCGA-50-5055     TCGA-50-5066 
"HAS2 WILD-TYPE" "HAS2 WILD-TYPE" "HAS2 WILD-TYPE" "HAS2 WILD-TYPE" 
    TCGA-50-5068     TCGA-50-5072     TCGA-50-5930     TCGA-50-5931 
"HAS2 WILD-TYPE" "HAS2 WILD-TYPE" "HAS2 WILD-TYPE" "HAS2 WILD-TYPE" 
    TCGA-50-5932     TCGA-50-5933     TCGA-50-5935     TCGA-50-5936 
"HAS2 WILD-TYPE" "HAS2 WILD-TYPE" "HAS2 WILD-TYPE" "HAS2 WILD-TYPE" 
    TCGA-50-5939     TCGA-50-5941     TCGA-50-5942     TCGA-50-5944 
"HAS2 WILD-TYPE" "HAS2 WILD-TYPE" "HAS2 WILD-TYPE" "HAS2 WILD-TYPE" 
    TCGA-50-5946     TCGA-50-6590     TCGA-50-6591     TCGA-50-6592 
"HAS2 WILD-TYPE" "HAS2 WILD-TYPE" "HAS2 WILD-TYPE" "HAS2 WILD-TYPE" 
    TCGA-50-6593     TCGA-50-6594     TCGA-50-6595     TCGA-50-6597 
"HAS2 WILD-TYPE"   "HAS2 MUTATED" "HAS2 WILD-TYPE" "HAS2 WILD-TYPE" 
    TCGA-55-1592     TCGA-55-1594     TCGA-55-1595     TCGA-55-1596 
  "HAS2 MUTATED" "HAS2 WILD-TYPE" "HAS2 WILD-TYPE" "HAS2 WILD-TYPE" 
    TCGA-55-5899     TCGA-55-6543     TCGA-55-6642     TCGA-55-6712 
"HAS2 WILD-TYPE"   "HAS2 MUTATED" "HAS2 WILD-TYPE" "HAS2 WILD-TYPE" 
    TCGA-64-1676     TCGA-64-1677     TCGA-64-1678     TCGA-64-1680 
"HAS2 WILD-TYPE" "HAS2 WILD-TYPE" "HAS2 WILD-TYPE" "HAS2 WILD-TYPE" 
    TCGA-64-5774     TCGA-64-5775     TCGA-64-5778     TCGA-64-5779 
"HAS2 WILD-TYPE" "HAS2 WILD-TYPE" "HAS2 WILD-TYPE" "HAS2 WILD-TYPE" 
    TCGA-64-5781     TCGA-64-5815     TCGA-67-3770     TCGA-67-3771 
"HAS2 WILD-TYPE" "HAS2 WILD-TYPE" "HAS2 WILD-TYPE" "HAS2 WILD-TYPE" 
    TCGA-67-3772     TCGA-67-3773     TCGA-67-3774     TCGA-67-6215 
"HAS2 WILD-TYPE" "HAS2 WILD-TYPE" "HAS2 WILD-TYPE" "HAS2 WILD-TYPE" 
    TCGA-67-6216     TCGA-67-6217     TCGA-71-6725     TCGA-73-4658 
"HAS2 WILD-TYPE" "HAS2 WILD-TYPE" "HAS2 WILD-TYPE" "HAS2 WILD-TYPE" 
    TCGA-73-4659     TCGA-73-4662     TCGA-73-4666     TCGA-73-4668 
"HAS2 WILD-TYPE" "HAS2 WILD-TYPE" "HAS2 WILD-TYPE" "HAS2 WILD-TYPE" 
    TCGA-73-4670     TCGA-73-4675     TCGA-73-4676     TCGA-73-4677 
"HAS2 WILD-TYPE" "HAS2 WILD-TYPE" "HAS2 WILD-TYPE" "HAS2 WILD-TYPE" 
    TCGA-91-6828     TCGA-91-6829     TCGA-91-6831     TCGA-91-6835 
  "HAS2 MUTATED" "HAS2 WILD-TYPE" "HAS2 WILD-TYPE" "HAS2 WILD-TYPE" 
    TCGA-91-6836 
"HAS2 WILD-TYPE" 
    TCGA-05-4249     TCGA-05-4250     TCGA-05-4382     TCGA-05-4384 
"HAS2 WILD-TYPE"   "HAS2 MUTATED" "HAS2 WILD-TYPE" "HAS2 WILD-TYPE" 
    TCGA-05-4390     TCGA-05-4396     TCGA-05-4397     TCGA-05-4398 
"HAS2 WILD-TYPE" "HAS2 WILD-TYPE" "HAS2 WILD-TYPE" "HAS2 WILD-TYPE" 
    TCGA-05-4402     TCGA-05-4405     TCGA-05-4415     TCGA-05-4417 
"HAS2 WILD-TYPE" "HAS2 WILD-TYPE" "HAS2 WILD-TYPE"   "HAS2 MUTATED" 
    TCGA-05-4418     TCGA-05-4420     TCGA-05-4424     TCGA-05-4426 
"HAS2 WILD-TYPE" "HAS2 WILD-TYPE" "HAS2 WILD-TYPE" "HAS2 WILD-TYPE" 
    TCGA-05-4427     TCGA-05-4430     TCGA-05-4432     TCGA-05-4433 
"HAS2 WILD-TYPE" "HAS2 WILD-TYPE" "HAS2 WILD-TYPE" "HAS2 WILD-TYPE" 
    TCGA-05-4434     TCGA-05-5420     TCGA-05-5423     TCGA-05-5425 
"HAS2 WILD-TYPE" "HAS2 WILD-TYPE" "HAS2 WILD-TYPE" "HAS2 WILD-TYPE" 
    TCGA-05-5429     TCGA-05-5715     TCGA-35-3615     TCGA-35-4122 
"HAS2 WILD-TYPE" "HAS2 WILD-TYPE" "HAS2 WILD-TYPE" "HAS2 WILD-TYPE" 
    TCGA-35-4123     TCGA-35-5375     TCGA-38-4625     TCGA-38-4626 
"HAS2 WILD-TYPE" "HAS2 WILD-TYPE"   "HAS2 MUTATED" "HAS2 WILD-TYPE" 
    TCGA-38-4627     TCGA-38-4628     TCGA-38-4629     TCGA-38-4630 
"HAS2 WILD-TYPE" "HAS2 WILD-TYPE" "HAS2 WILD-TYPE" "HAS2 WILD-TYPE" 
    TCGA-38-4631     TCGA-38-4632     TCGA-38-6178     TCGA-44-2655 
"HAS2 WILD-TYPE" "HAS2 WILD-TYPE" "HAS2 WILD-TYPE" "HAS2 WILD-TYPE" 
    TCGA-44-2656     TCGA-44-2657     TCGA-44-2659     TCGA-44-2661 
  "HAS2 MUTATED" "HAS2 WILD-TYPE" "HAS2 WILD-TYPE" "HAS2 WILD-TYPE" 
    TCGA-44-2662     TCGA-44-2665     TCGA-44-2666     TCGA-44-2668 
"HAS2 WILD-TYPE" "HAS2 WILD-TYPE" "HAS2 WILD-TYPE" "HAS2 WILD-TYPE" 
    TCGA-44-3396     TCGA-44-3398     TCGA-44-3918     TCGA-44-3919 
"HAS2 WILD-TYPE" "HAS2 WILD-TYPE" "HAS2 WILD-TYPE" "HAS2 WILD-TYPE" 
    TCGA-44-4112     TCGA-44-5643     TCGA-44-5645     TCGA-44-6144 
"HAS2 WILD-TYPE" "HAS2 WILD-TYPE" "HAS2 WILD-TYPE" "HAS2 WILD-TYPE" 
    TCGA-44-6145     TCGA-44-6146     TCGA-44-6147     TCGA-44-6148 
"HAS2 WILD-TYPE" "HAS2 WILD-TYPE" "HAS2 WILD-TYPE" "HAS2 WILD-TYPE" 
    TCGA-44-6774     TCGA-44-6775     TCGA-44-6776     TCGA-44-6777 
"HAS2 WILD-TYPE" "HAS2 WILD-TYPE" "HAS2 WILD-TYPE" "HAS2 WILD-TYPE" 
    TCGA-44-6778     TCGA-44-6779     TCGA-49-4486     TCGA-49-4487 
"HAS2 WILD-TYPE" "HAS2 WILD-TYPE" "HAS2 WILD-TYPE" "HAS2 WILD-TYPE" 
    TCGA-49-4488     TCGA-49-4490     TCGA-49-4494     TCGA-49-4501 
"HAS2 WILD-TYPE" "HAS2 WILD-TYPE" "HAS2 WILD-TYPE" "HAS2 WILD-TYPE" 
    TCGA-49-4505     TCGA-49-4506     TCGA-49-4507     TCGA-49-4510 
"HAS2 WILD-TYPE" "HAS2 WILD-TYPE" "HAS2 WILD-TYPE" "HAS2 WILD-TYPE" 
    TCGA-49-4512     TCGA-49-4514     TCGA-49-6742     TCGA-49-6743 
"HAS2 WILD-TYPE" "HAS2 WILD-TYPE" "HAS2 WILD-TYPE"   "HAS2 MUTATED" 
    TCGA-49-6744     TCGA-49-6745     TCGA-50-5044     TCGA-50-5045 
"HAS2 WILD-TYPE" "HAS2 WILD-TYPE" "HAS2 WILD-TYPE" "HAS2 WILD-TYPE" 
    TCGA-50-5049     TCGA-50-5051     TCGA-50-5055     TCGA-50-5066 
"HAS2 WILD-TYPE" "HAS2 WILD-TYPE" "HAS2 WILD-TYPE" "HAS2 WILD-TYPE" 
    TCGA-50-5068     TCGA-50-5072     TCGA-50-5930     TCGA-50-5931 
"HAS2 WILD-TYPE" "HAS2 WILD-TYPE" "HAS2 WILD-TYPE" "HAS2 WILD-TYPE" 
    TCGA-50-5932     TCGA-50-5933     TCGA-50-5935     TCGA-50-5936 
"HAS2 WILD-TYPE" "HAS2 WILD-TYPE" "HAS2 WILD-TYPE" "HAS2 WILD-TYPE" 
    TCGA-50-5939     TCGA-50-5941     TCGA-50-5942     TCGA-50-5944 
"HAS2 WILD-TYPE" "HAS2 WILD-TYPE" "HAS2 WILD-TYPE" "HAS2 WILD-TYPE" 
    TCGA-50-5946     TCGA-50-6590     TCGA-50-6591     TCGA-50-6592 
"HAS2 WILD-TYPE" "HAS2 WILD-TYPE" "HAS2 WILD-TYPE" "HAS2 WILD-TYPE" 
    TCGA-50-6593     TCGA-50-6594     TCGA-50-6595     TCGA-50-6597 
"HAS2 WILD-TYPE"   "HAS2 MUTATED" "HAS2 WILD-TYPE" "HAS2 WILD-TYPE" 
    TCGA-55-1592     TCGA-55-1594     TCGA-55-1595     TCGA-55-1596 
  "HAS2 MUTATED" "HAS2 WILD-TYPE" "HAS2 WILD-TYPE" "HAS2 WILD-TYPE" 
    TCGA-55-5899     TCGA-55-6543     TCGA-55-6642     TCGA-55-6712 
"HAS2 WILD-TYPE"   "HAS2 MUTATED" "HAS2 WILD-TYPE" "HAS2 WILD-TYPE" 
    TCGA-64-1676     TCGA-64-1677     TCGA-64-1678     TCGA-64-1680 
"HAS2 WILD-TYPE" "HAS2 WILD-TYPE" "HAS2 WILD-TYPE" "HAS2 WILD-TYPE" 
    TCGA-64-5774     TCGA-64-5775     TCGA-64-5778     TCGA-64-5779 
"HAS2 WILD-TYPE" "HAS2 WILD-TYPE" "HAS2 WILD-TYPE" "HAS2 WILD-TYPE" 
    TCGA-64-5781     TCGA-64-5815     TCGA-67-3770     TCGA-67-3771 
"HAS2 WILD-TYPE" "HAS2 WILD-TYPE" "HAS2 WILD-TYPE" "HAS2 WILD-TYPE" 
    TCGA-67-3772     TCGA-67-3773     TCGA-67-3774     TCGA-67-6215 
"HAS2 WILD-TYPE" "HAS2 WILD-TYPE" "HAS2 WILD-TYPE" "HAS2 WILD-TYPE" 
    TCGA-67-6216     TCGA-67-6217     TCGA-71-6725     TCGA-73-4658 
"HAS2 WILD-TYPE" "HAS2 WILD-TYPE" "HAS2 WILD-TYPE" "HAS2 WILD-TYPE" 
    TCGA-73-4659     TCGA-73-4662     TCGA-73-4666     TCGA-73-4668 
"HAS2 WILD-TYPE" "HAS2 WILD-TYPE" "HAS2 WILD-TYPE" "HAS2 WILD-TYPE" 
    TCGA-73-4670     TCGA-73-4675     TCGA-73-4676     TCGA-73-4677 
"HAS2 WILD-TYPE" "HAS2 WILD-TYPE" "HAS2 WILD-TYPE" "HAS2 WILD-TYPE" 
    TCGA-91-6828     TCGA-91-6829     TCGA-91-6831     TCGA-91-6835 
  "HAS2 MUTATED" "HAS2 WILD-TYPE" "HAS2 WILD-TYPE" "HAS2 WILD-TYPE" 
    TCGA-91-6836 
"HAS2 WILD-TYPE" 
[1] "hr=" "1.5"
D246V2, continuous
D246V3, binary
[1] "tbl2"
                cls
clus             [,1] [,2]
  HAS2 MUTATED      7    3
  HAS2 WILD-TYPE   86   76
        clus
vv       HAS2 MUTATED HAS2 WILD-TYPE
  FEMALE            7             86
  MALE              3             76
D246V4, continuous
D246V5, multiclass
D246V6, multiclass
    clus
vv   HAS2 MUTATED HAS2 WILD-TYPE
  T1            3             38
  T2            4            104
  T3            3             11
  T4            0              8
D246V7, multiclass
       clus
vv      HAS2 MUTATED HAS2 WILD-TYPE
  N0               7             88
  N1               1             36
  N2+N3            2             33
D246V8, multiclass
    clus
vv   HAS2 MUTATED HAS2 WILD-TYPE
  M0            6            131
  M1            0              9
  MX            3             19
D246V9, multiclass
     clus
vv    HAS2 MUTATED HAS2 WILD-TYPE
  I              5             83
  II             1             32
  III            3             36
  IV             0              9
D246V10, binary
[1] "tbl2"
                cls
clus             [,1] [,2]
  HAS2 MUTATED      0   10
  HAS2 WILD-TYPE   16  146
     clus
vv    HAS2 MUTATED HAS2 WILD-TYPE
  NO             0             16
  YES           10            146
D246V11, continuous
D246V12, continuous
D246V13, multiclass
                                             clus
vv                                            HAS2 MUTATED HAS2 WILD-TYPE
  CURRENT REFORMED SMOKER FOR < OR = 15 YEARS            7             55
  CURRENT REFORMED SMOKER FOR > 15 YEARS                 1             45
  CURRENT SMOKER                                         2             26
  LIFELONG NON-SMOKER                                    0             24
D246V14, continuous

Clustering(247) Variable = PJA1 MUTATION ANALYSIS
D247V1, survival
                sevent
clus2             0  1
  PJA1 MUTATED    5  1
  PJA1 WILD-TYPE 94 49
  PJA1 MUTATED PJA1 WILD-TYPE 
             6            143 
  PJA1 MUTATED PJA1 WILD-TYPE 
             1             49 
$`PJA1 MUTATED`
TCGA-05-4390 TCGA-44-3398 TCGA-49-4514 TCGA-50-6592 TCGA-64-1676 TCGA-73-4668 
       37.02         8.32        43.20        25.51        56.81        15.35 

$`PJA1 WILD-TYPE`
TCGA-05-4249 TCGA-05-4250 TCGA-05-4382 TCGA-05-4384 TCGA-05-4396 TCGA-05-4397 
       38.07         3.98        19.92        14.01         9.96        24.03 
TCGA-05-4398 TCGA-05-4402 TCGA-05-4405 TCGA-05-4415 TCGA-05-4417 TCGA-05-4418 
       47.05         8.02        20.05         2.96        14.93         8.98 
TCGA-05-4420 TCGA-05-4424 TCGA-05-4426 TCGA-05-4427 TCGA-05-4430 TCGA-05-4432 
       29.95        30.02        26.01        26.01        25.02        25.02 
TCGA-05-4433 TCGA-05-4434 TCGA-05-5420 TCGA-05-5423 TCGA-05-5425 TCGA-05-5429 
       24.00        15.02         1.02         4.96         2.96         0.99 
TCGA-05-5715 TCGA-35-3615 TCGA-35-4122 TCGA-35-4123 TCGA-35-5375 TCGA-38-4625 
        2.04         0.46         7.36         5.95         8.68        47.61 
TCGA-38-4626 TCGA-38-4627 TCGA-38-4628 TCGA-38-4629 TCGA-38-4630 TCGA-38-4631 
       85.32        37.71        49.02        28.37        35.28        11.64 
TCGA-38-4632 TCGA-38-6178 TCGA-44-2655 TCGA-44-2656 TCGA-44-2657 TCGA-44-2659 
       44.61         5.19        18.87        19.10        13.15        17.39 
TCGA-44-2661 TCGA-44-2662 TCGA-44-2665 TCGA-44-2666 TCGA-44-2668 TCGA-44-3396 
        3.39        15.78        13.15         3.19         8.09        10.22 
TCGA-44-3918 TCGA-44-3919 TCGA-44-4112 TCGA-44-5643 TCGA-44-5645 TCGA-44-6144 
        6.44         6.21         4.60         3.48         6.84         0.30 
TCGA-44-6145 TCGA-44-6146 TCGA-44-6147 TCGA-44-6148 TCGA-44-6774 TCGA-44-6775 
        3.35         9.93         7.76         3.12         5.42         2.70 
TCGA-44-6776 TCGA-44-6777 TCGA-44-6778 TCGA-44-6779 TCGA-49-4486 TCGA-49-4487 
       63.72        32.45        36.49        16.41        76.21        28.11 
TCGA-49-4488 TCGA-49-4490 TCGA-49-4494 TCGA-49-4501 TCGA-49-4505 TCGA-49-4506 
       28.57        12.66        35.54        46.72        14.07        32.84 
TCGA-49-4507 TCGA-49-4510 TCGA-49-4512 TCGA-49-6742 TCGA-49-6743 TCGA-49-6744 
        8.81        29.46        29.75        15.02        12.13        12.99 
TCGA-49-6745 TCGA-50-5044 TCGA-50-5045 TCGA-50-5049 TCGA-50-5051 TCGA-50-5055 
        4.93        20.48        71.47        48.82        14.96        25.81 
TCGA-50-5066 TCGA-50-5068 TCGA-50-5072 TCGA-50-5930 TCGA-50-5931 TCGA-50-5932 
        9.76        49.28         8.05         9.27         8.78        35.87 
TCGA-50-5933 TCGA-50-5935 TCGA-50-5936 TCGA-50-5939 TCGA-50-5941 TCGA-50-5942 
       77.88        21.47         8.45        15.12         9.37         4.44 
TCGA-50-5944 TCGA-50-5946 TCGA-50-6590 TCGA-50-6591 TCGA-50-6593 TCGA-50-6594 
       12.26        11.47        42.31         3.88        11.05        12.16 
TCGA-50-6595 TCGA-50-6597 TCGA-55-1592 TCGA-55-1594 TCGA-55-1595 TCGA-55-1596 
        6.21        33.37        23.05        38.73        48.62        45.17 
TCGA-55-5899 TCGA-55-6543 TCGA-55-6642 TCGA-55-6712 TCGA-64-1677 TCGA-64-1678 
        2.86         0.07        32.61         0.79        20.65        39.09 
TCGA-64-1680 TCGA-64-5774 TCGA-64-5775 TCGA-64-5778 TCGA-64-5779 TCGA-64-5781 
       37.02        83.84         0.10        30.44        16.67        39.52 
TCGA-64-5815 TCGA-67-3770 TCGA-67-3771 TCGA-67-3772 TCGA-67-3773 TCGA-67-3774 
        7.33         0.99         1.97         0.59         2.04         0.59 
TCGA-67-6215 TCGA-67-6216 TCGA-67-6217 TCGA-71-6725 TCGA-73-4658 TCGA-73-4659 
        0.89         0.69        13.87         2.01        52.57        23.38 
TCGA-73-4662 TCGA-73-4666 TCGA-73-4670 TCGA-73-4675 TCGA-73-4676 TCGA-73-4677 
       29.95        20.28         0.46         1.32         4.01         1.25 
TCGA-91-6828 TCGA-91-6829 TCGA-91-6831 TCGA-91-6835 TCGA-91-6836 
        1.22        41.33         1.28         1.15         0.36 

  PJA1 MUTATED PJA1 WILD-TYPE 
          8.32           0.07 
  PJA1 MUTATED PJA1 WILD-TYPE 
         56.81          85.32 
  PJA1 MUTATED PJA1 WILD-TYPE 
        31.265         13.150 
[1] "8.3 - 56.8 (31.3)" "0.1 - 85.3 (13.2)"
    TCGA-05-4249     TCGA-05-4250     TCGA-05-4382     TCGA-05-4384 
"PJA1 WILD-TYPE" "PJA1 WILD-TYPE" "PJA1 WILD-TYPE" "PJA1 WILD-TYPE" 
    TCGA-05-4390     TCGA-05-4396     TCGA-05-4397     TCGA-05-4398 
  "PJA1 MUTATED" "PJA1 WILD-TYPE" "PJA1 WILD-TYPE" "PJA1 WILD-TYPE" 
    TCGA-05-4402     TCGA-05-4405     TCGA-05-4415     TCGA-05-4417 
"PJA1 WILD-TYPE" "PJA1 WILD-TYPE" "PJA1 WILD-TYPE" "PJA1 WILD-TYPE" 
    TCGA-05-4418     TCGA-05-4420     TCGA-05-4424     TCGA-05-4426 
"PJA1 WILD-TYPE" "PJA1 WILD-TYPE" "PJA1 WILD-TYPE" "PJA1 WILD-TYPE" 
    TCGA-05-4427     TCGA-05-4430     TCGA-05-4432     TCGA-05-4433 
"PJA1 WILD-TYPE" "PJA1 WILD-TYPE" "PJA1 WILD-TYPE" "PJA1 WILD-TYPE" 
    TCGA-05-4434     TCGA-05-5420     TCGA-05-5423     TCGA-05-5425 
"PJA1 WILD-TYPE" "PJA1 WILD-TYPE" "PJA1 WILD-TYPE" "PJA1 WILD-TYPE" 
    TCGA-05-5429     TCGA-05-5715     TCGA-35-3615     TCGA-35-4122 
"PJA1 WILD-TYPE" "PJA1 WILD-TYPE" "PJA1 WILD-TYPE" "PJA1 WILD-TYPE" 
    TCGA-35-4123     TCGA-35-5375     TCGA-38-4625     TCGA-38-4626 
"PJA1 WILD-TYPE" "PJA1 WILD-TYPE" "PJA1 WILD-TYPE" "PJA1 WILD-TYPE" 
    TCGA-38-4627     TCGA-38-4628     TCGA-38-4629     TCGA-38-4630 
"PJA1 WILD-TYPE" "PJA1 WILD-TYPE" "PJA1 WILD-TYPE" "PJA1 WILD-TYPE" 
    TCGA-38-4631     TCGA-38-4632     TCGA-38-6178     TCGA-44-2655 
"PJA1 WILD-TYPE" "PJA1 WILD-TYPE" "PJA1 WILD-TYPE" "PJA1 WILD-TYPE" 
    TCGA-44-2656     TCGA-44-2657     TCGA-44-2659     TCGA-44-2661 
"PJA1 WILD-TYPE" "PJA1 WILD-TYPE" "PJA1 WILD-TYPE" "PJA1 WILD-TYPE" 
    TCGA-44-2662     TCGA-44-2665     TCGA-44-2666     TCGA-44-2668 
"PJA1 WILD-TYPE" "PJA1 WILD-TYPE" "PJA1 WILD-TYPE" "PJA1 WILD-TYPE" 
    TCGA-44-3396     TCGA-44-3398     TCGA-44-3918     TCGA-44-3919 
"PJA1 WILD-TYPE"   "PJA1 MUTATED" "PJA1 WILD-TYPE" "PJA1 WILD-TYPE" 
    TCGA-44-4112     TCGA-44-5643     TCGA-44-5645     TCGA-44-6144 
"PJA1 WILD-TYPE" "PJA1 WILD-TYPE" "PJA1 WILD-TYPE" "PJA1 WILD-TYPE" 
    TCGA-44-6145     TCGA-44-6146     TCGA-44-6147     TCGA-44-6148 
"PJA1 WILD-TYPE" "PJA1 WILD-TYPE" "PJA1 WILD-TYPE" "PJA1 WILD-TYPE" 
    TCGA-44-6774     TCGA-44-6775     TCGA-44-6776     TCGA-44-6777 
"PJA1 WILD-TYPE" "PJA1 WILD-TYPE" "PJA1 WILD-TYPE" "PJA1 WILD-TYPE" 
    TCGA-44-6778     TCGA-44-6779     TCGA-49-4486     TCGA-49-4487 
"PJA1 WILD-TYPE" "PJA1 WILD-TYPE" "PJA1 WILD-TYPE" "PJA1 WILD-TYPE" 
    TCGA-49-4488     TCGA-49-4490     TCGA-49-4494     TCGA-49-4501 
"PJA1 WILD-TYPE" "PJA1 WILD-TYPE" "PJA1 WILD-TYPE" "PJA1 WILD-TYPE" 
    TCGA-49-4505     TCGA-49-4506     TCGA-49-4507     TCGA-49-4510 
"PJA1 WILD-TYPE" "PJA1 WILD-TYPE" "PJA1 WILD-TYPE" "PJA1 WILD-TYPE" 
    TCGA-49-4512     TCGA-49-4514     TCGA-49-6742     TCGA-49-6743 
"PJA1 WILD-TYPE"   "PJA1 MUTATED" "PJA1 WILD-TYPE" "PJA1 WILD-TYPE" 
    TCGA-49-6744     TCGA-49-6745     TCGA-50-5044     TCGA-50-5045 
"PJA1 WILD-TYPE" "PJA1 WILD-TYPE" "PJA1 WILD-TYPE" "PJA1 WILD-TYPE" 
    TCGA-50-5049     TCGA-50-5051     TCGA-50-5055     TCGA-50-5066 
"PJA1 WILD-TYPE" "PJA1 WILD-TYPE" "PJA1 WILD-TYPE" "PJA1 WILD-TYPE" 
    TCGA-50-5068     TCGA-50-5072     TCGA-50-5930     TCGA-50-5931 
"PJA1 WILD-TYPE" "PJA1 WILD-TYPE" "PJA1 WILD-TYPE" "PJA1 WILD-TYPE" 
    TCGA-50-5932     TCGA-50-5933     TCGA-50-5935     TCGA-50-5936 
"PJA1 WILD-TYPE" "PJA1 WILD-TYPE" "PJA1 WILD-TYPE" "PJA1 WILD-TYPE" 
    TCGA-50-5939     TCGA-50-5941     TCGA-50-5942     TCGA-50-5944 
"PJA1 WILD-TYPE" "PJA1 WILD-TYPE" "PJA1 WILD-TYPE" "PJA1 WILD-TYPE" 
    TCGA-50-5946     TCGA-50-6590     TCGA-50-6591     TCGA-50-6592 
"PJA1 WILD-TYPE" "PJA1 WILD-TYPE" "PJA1 WILD-TYPE"   "PJA1 MUTATED" 
    TCGA-50-6593     TCGA-50-6594     TCGA-50-6595     TCGA-50-6597 
"PJA1 WILD-TYPE" "PJA1 WILD-TYPE" "PJA1 WILD-TYPE" "PJA1 WILD-TYPE" 
    TCGA-55-1592     TCGA-55-1594     TCGA-55-1595     TCGA-55-1596 
"PJA1 WILD-TYPE" "PJA1 WILD-TYPE" "PJA1 WILD-TYPE" "PJA1 WILD-TYPE" 
    TCGA-55-5899     TCGA-55-6543     TCGA-55-6642     TCGA-55-6712 
"PJA1 WILD-TYPE" "PJA1 WILD-TYPE" "PJA1 WILD-TYPE" "PJA1 WILD-TYPE" 
    TCGA-64-1676     TCGA-64-1677     TCGA-64-1678     TCGA-64-1680 
  "PJA1 MUTATED" "PJA1 WILD-TYPE" "PJA1 WILD-TYPE" "PJA1 WILD-TYPE" 
    TCGA-64-5774     TCGA-64-5775     TCGA-64-5778     TCGA-64-5779 
"PJA1 WILD-TYPE" "PJA1 WILD-TYPE" "PJA1 WILD-TYPE" "PJA1 WILD-TYPE" 
    TCGA-64-5781     TCGA-64-5815     TCGA-67-3770     TCGA-67-3771 
"PJA1 WILD-TYPE" "PJA1 WILD-TYPE" "PJA1 WILD-TYPE" "PJA1 WILD-TYPE" 
    TCGA-67-3772     TCGA-67-3773     TCGA-67-3774     TCGA-67-6215 
"PJA1 WILD-TYPE" "PJA1 WILD-TYPE" "PJA1 WILD-TYPE" "PJA1 WILD-TYPE" 
    TCGA-67-6216     TCGA-67-6217     TCGA-71-6725     TCGA-73-4658 
"PJA1 WILD-TYPE" "PJA1 WILD-TYPE" "PJA1 WILD-TYPE" "PJA1 WILD-TYPE" 
    TCGA-73-4659     TCGA-73-4662     TCGA-73-4666     TCGA-73-4668 
"PJA1 WILD-TYPE" "PJA1 WILD-TYPE" "PJA1 WILD-TYPE"   "PJA1 MUTATED" 
    TCGA-73-4670     TCGA-73-4675     TCGA-73-4676     TCGA-73-4677 
"PJA1 WILD-TYPE" "PJA1 WILD-TYPE" "PJA1 WILD-TYPE" "PJA1 WILD-TYPE" 
    TCGA-91-6828     TCGA-91-6829     TCGA-91-6831     TCGA-91-6835 
"PJA1 WILD-TYPE" "PJA1 WILD-TYPE" "PJA1 WILD-TYPE" "PJA1 WILD-TYPE" 
    TCGA-91-6836 
"PJA1 WILD-TYPE" 
    TCGA-05-4249     TCGA-05-4250     TCGA-05-4382     TCGA-05-4384 
"PJA1 WILD-TYPE" "PJA1 WILD-TYPE" "PJA1 WILD-TYPE" "PJA1 WILD-TYPE" 
    TCGA-05-4390     TCGA-05-4396     TCGA-05-4397     TCGA-05-4398 
  "PJA1 MUTATED" "PJA1 WILD-TYPE" "PJA1 WILD-TYPE" "PJA1 WILD-TYPE" 
    TCGA-05-4402     TCGA-05-4405     TCGA-05-4415     TCGA-05-4417 
"PJA1 WILD-TYPE" "PJA1 WILD-TYPE" "PJA1 WILD-TYPE" "PJA1 WILD-TYPE" 
    TCGA-05-4418     TCGA-05-4420     TCGA-05-4424     TCGA-05-4426 
"PJA1 WILD-TYPE" "PJA1 WILD-TYPE" "PJA1 WILD-TYPE" "PJA1 WILD-TYPE" 
    TCGA-05-4427     TCGA-05-4430     TCGA-05-4432     TCGA-05-4433 
"PJA1 WILD-TYPE" "PJA1 WILD-TYPE" "PJA1 WILD-TYPE" "PJA1 WILD-TYPE" 
    TCGA-05-4434     TCGA-05-5420     TCGA-05-5423     TCGA-05-5425 
"PJA1 WILD-TYPE" "PJA1 WILD-TYPE" "PJA1 WILD-TYPE" "PJA1 WILD-TYPE" 
    TCGA-05-5429     TCGA-05-5715     TCGA-35-3615     TCGA-35-4122 
"PJA1 WILD-TYPE" "PJA1 WILD-TYPE" "PJA1 WILD-TYPE" "PJA1 WILD-TYPE" 
    TCGA-35-4123     TCGA-35-5375     TCGA-38-4625     TCGA-38-4626 
"PJA1 WILD-TYPE" "PJA1 WILD-TYPE" "PJA1 WILD-TYPE" "PJA1 WILD-TYPE" 
    TCGA-38-4627     TCGA-38-4628     TCGA-38-4629     TCGA-38-4630 
"PJA1 WILD-TYPE" "PJA1 WILD-TYPE" "PJA1 WILD-TYPE" "PJA1 WILD-TYPE" 
    TCGA-38-4631     TCGA-38-4632     TCGA-38-6178     TCGA-44-2655 
"PJA1 WILD-TYPE" "PJA1 WILD-TYPE" "PJA1 WILD-TYPE" "PJA1 WILD-TYPE" 
    TCGA-44-2656     TCGA-44-2657     TCGA-44-2659     TCGA-44-2661 
"PJA1 WILD-TYPE" "PJA1 WILD-TYPE" "PJA1 WILD-TYPE" "PJA1 WILD-TYPE" 
    TCGA-44-2662     TCGA-44-2665     TCGA-44-2666     TCGA-44-2668 
"PJA1 WILD-TYPE" "PJA1 WILD-TYPE" "PJA1 WILD-TYPE" "PJA1 WILD-TYPE" 
    TCGA-44-3396     TCGA-44-3398     TCGA-44-3918     TCGA-44-3919 
"PJA1 WILD-TYPE"   "PJA1 MUTATED" "PJA1 WILD-TYPE" "PJA1 WILD-TYPE" 
    TCGA-44-4112     TCGA-44-5643     TCGA-44-5645     TCGA-44-6144 
"PJA1 WILD-TYPE" "PJA1 WILD-TYPE" "PJA1 WILD-TYPE" "PJA1 WILD-TYPE" 
    TCGA-44-6145     TCGA-44-6146     TCGA-44-6147     TCGA-44-6148 
"PJA1 WILD-TYPE" "PJA1 WILD-TYPE" "PJA1 WILD-TYPE" "PJA1 WILD-TYPE" 
    TCGA-44-6774     TCGA-44-6775     TCGA-44-6776     TCGA-44-6777 
"PJA1 WILD-TYPE" "PJA1 WILD-TYPE" "PJA1 WILD-TYPE" "PJA1 WILD-TYPE" 
    TCGA-44-6778     TCGA-44-6779     TCGA-49-4486     TCGA-49-4487 
"PJA1 WILD-TYPE" "PJA1 WILD-TYPE" "PJA1 WILD-TYPE" "PJA1 WILD-TYPE" 
    TCGA-49-4488     TCGA-49-4490     TCGA-49-4494     TCGA-49-4501 
"PJA1 WILD-TYPE" "PJA1 WILD-TYPE" "PJA1 WILD-TYPE" "PJA1 WILD-TYPE" 
    TCGA-49-4505     TCGA-49-4506     TCGA-49-4507     TCGA-49-4510 
"PJA1 WILD-TYPE" "PJA1 WILD-TYPE" "PJA1 WILD-TYPE" "PJA1 WILD-TYPE" 
    TCGA-49-4512     TCGA-49-4514     TCGA-49-6742     TCGA-49-6743 
"PJA1 WILD-TYPE"   "PJA1 MUTATED" "PJA1 WILD-TYPE" "PJA1 WILD-TYPE" 
    TCGA-49-6744     TCGA-49-6745     TCGA-50-5044     TCGA-50-5045 
"PJA1 WILD-TYPE" "PJA1 WILD-TYPE" "PJA1 WILD-TYPE" "PJA1 WILD-TYPE" 
    TCGA-50-5049     TCGA-50-5051     TCGA-50-5055     TCGA-50-5066 
"PJA1 WILD-TYPE" "PJA1 WILD-TYPE" "PJA1 WILD-TYPE" "PJA1 WILD-TYPE" 
    TCGA-50-5068     TCGA-50-5072     TCGA-50-5930     TCGA-50-5931 
"PJA1 WILD-TYPE" "PJA1 WILD-TYPE" "PJA1 WILD-TYPE" "PJA1 WILD-TYPE" 
    TCGA-50-5932     TCGA-50-5933     TCGA-50-5935     TCGA-50-5936 
"PJA1 WILD-TYPE" "PJA1 WILD-TYPE" "PJA1 WILD-TYPE" "PJA1 WILD-TYPE" 
    TCGA-50-5939     TCGA-50-5941     TCGA-50-5942     TCGA-50-5944 
"PJA1 WILD-TYPE" "PJA1 WILD-TYPE" "PJA1 WILD-TYPE" "PJA1 WILD-TYPE" 
    TCGA-50-5946     TCGA-50-6590     TCGA-50-6591     TCGA-50-6592 
"PJA1 WILD-TYPE" "PJA1 WILD-TYPE" "PJA1 WILD-TYPE"   "PJA1 MUTATED" 
    TCGA-50-6593     TCGA-50-6594     TCGA-50-6595     TCGA-50-6597 
"PJA1 WILD-TYPE" "PJA1 WILD-TYPE" "PJA1 WILD-TYPE" "PJA1 WILD-TYPE" 
    TCGA-55-1592     TCGA-55-1594     TCGA-55-1595     TCGA-55-1596 
"PJA1 WILD-TYPE" "PJA1 WILD-TYPE" "PJA1 WILD-TYPE" "PJA1 WILD-TYPE" 
    TCGA-55-5899     TCGA-55-6543     TCGA-55-6642     TCGA-55-6712 
"PJA1 WILD-TYPE" "PJA1 WILD-TYPE" "PJA1 WILD-TYPE" "PJA1 WILD-TYPE" 
    TCGA-64-1676     TCGA-64-1677     TCGA-64-1678     TCGA-64-1680 
  "PJA1 MUTATED" "PJA1 WILD-TYPE" "PJA1 WILD-TYPE" "PJA1 WILD-TYPE" 
    TCGA-64-5774     TCGA-64-5775     TCGA-64-5778     TCGA-64-5779 
"PJA1 WILD-TYPE" "PJA1 WILD-TYPE" "PJA1 WILD-TYPE" "PJA1 WILD-TYPE" 
    TCGA-64-5781     TCGA-64-5815     TCGA-67-3770     TCGA-67-3771 
"PJA1 WILD-TYPE" "PJA1 WILD-TYPE" "PJA1 WILD-TYPE" "PJA1 WILD-TYPE" 
    TCGA-67-3772     TCGA-67-3773     TCGA-67-3774     TCGA-67-6215 
"PJA1 WILD-TYPE" "PJA1 WILD-TYPE" "PJA1 WILD-TYPE" "PJA1 WILD-TYPE" 
    TCGA-67-6216     TCGA-67-6217     TCGA-71-6725     TCGA-73-4658 
"PJA1 WILD-TYPE" "PJA1 WILD-TYPE" "PJA1 WILD-TYPE" "PJA1 WILD-TYPE" 
    TCGA-73-4659     TCGA-73-4662     TCGA-73-4666     TCGA-73-4668 
"PJA1 WILD-TYPE" "PJA1 WILD-TYPE" "PJA1 WILD-TYPE"   "PJA1 MUTATED" 
    TCGA-73-4670     TCGA-73-4675     TCGA-73-4676     TCGA-73-4677 
"PJA1 WILD-TYPE" "PJA1 WILD-TYPE" "PJA1 WILD-TYPE" "PJA1 WILD-TYPE" 
    TCGA-91-6828     TCGA-91-6829     TCGA-91-6831     TCGA-91-6835 
"PJA1 WILD-TYPE" "PJA1 WILD-TYPE" "PJA1 WILD-TYPE" "PJA1 WILD-TYPE" 
    TCGA-91-6836 
"PJA1 WILD-TYPE" 
    TCGA-05-4249     TCGA-05-4250     TCGA-05-4382     TCGA-05-4384 
"PJA1 WILD-TYPE" "PJA1 WILD-TYPE" "PJA1 WILD-TYPE" "PJA1 WILD-TYPE" 
    TCGA-05-4390     TCGA-05-4396     TCGA-05-4397     TCGA-05-4398 
  "PJA1 MUTATED" "PJA1 WILD-TYPE" "PJA1 WILD-TYPE" "PJA1 WILD-TYPE" 
    TCGA-05-4402     TCGA-05-4405     TCGA-05-4415     TCGA-05-4417 
"PJA1 WILD-TYPE" "PJA1 WILD-TYPE" "PJA1 WILD-TYPE" "PJA1 WILD-TYPE" 
    TCGA-05-4418     TCGA-05-4420     TCGA-05-4424     TCGA-05-4426 
"PJA1 WILD-TYPE" "PJA1 WILD-TYPE" "PJA1 WILD-TYPE" "PJA1 WILD-TYPE" 
    TCGA-05-4427     TCGA-05-4430     TCGA-05-4432     TCGA-05-4433 
"PJA1 WILD-TYPE" "PJA1 WILD-TYPE" "PJA1 WILD-TYPE" "PJA1 WILD-TYPE" 
    TCGA-05-4434     TCGA-05-5420     TCGA-05-5423     TCGA-05-5425 
"PJA1 WILD-TYPE" "PJA1 WILD-TYPE" "PJA1 WILD-TYPE" "PJA1 WILD-TYPE" 
    TCGA-05-5429     TCGA-05-5715     TCGA-35-3615     TCGA-35-4122 
"PJA1 WILD-TYPE" "PJA1 WILD-TYPE" "PJA1 WILD-TYPE" "PJA1 WILD-TYPE" 
    TCGA-35-4123     TCGA-35-5375     TCGA-38-4625     TCGA-38-4626 
"PJA1 WILD-TYPE" "PJA1 WILD-TYPE" "PJA1 WILD-TYPE" "PJA1 WILD-TYPE" 
    TCGA-38-4627     TCGA-38-4628     TCGA-38-4629     TCGA-38-4630 
"PJA1 WILD-TYPE" "PJA1 WILD-TYPE" "PJA1 WILD-TYPE" "PJA1 WILD-TYPE" 
    TCGA-38-4631     TCGA-38-4632     TCGA-38-6178     TCGA-44-2655 
"PJA1 WILD-TYPE" "PJA1 WILD-TYPE" "PJA1 WILD-TYPE" "PJA1 WILD-TYPE" 
    TCGA-44-2656     TCGA-44-2657     TCGA-44-2659     TCGA-44-2661 
"PJA1 WILD-TYPE" "PJA1 WILD-TYPE" "PJA1 WILD-TYPE" "PJA1 WILD-TYPE" 
    TCGA-44-2662     TCGA-44-2665     TCGA-44-2666     TCGA-44-2668 
"PJA1 WILD-TYPE" "PJA1 WILD-TYPE" "PJA1 WILD-TYPE" "PJA1 WILD-TYPE" 
    TCGA-44-3396     TCGA-44-3398     TCGA-44-3918     TCGA-44-3919 
"PJA1 WILD-TYPE"   "PJA1 MUTATED" "PJA1 WILD-TYPE" "PJA1 WILD-TYPE" 
    TCGA-44-4112     TCGA-44-5643     TCGA-44-5645     TCGA-44-6144 
"PJA1 WILD-TYPE" "PJA1 WILD-TYPE" "PJA1 WILD-TYPE" "PJA1 WILD-TYPE" 
    TCGA-44-6145     TCGA-44-6146     TCGA-44-6147     TCGA-44-6148 
"PJA1 WILD-TYPE" "PJA1 WILD-TYPE" "PJA1 WILD-TYPE" "PJA1 WILD-TYPE" 
    TCGA-44-6774     TCGA-44-6775     TCGA-44-6776     TCGA-44-6777 
"PJA1 WILD-TYPE" "PJA1 WILD-TYPE" "PJA1 WILD-TYPE" "PJA1 WILD-TYPE" 
    TCGA-44-6778     TCGA-44-6779     TCGA-49-4486     TCGA-49-4487 
"PJA1 WILD-TYPE" "PJA1 WILD-TYPE" "PJA1 WILD-TYPE" "PJA1 WILD-TYPE" 
    TCGA-49-4488     TCGA-49-4490     TCGA-49-4494     TCGA-49-4501 
"PJA1 WILD-TYPE" "PJA1 WILD-TYPE" "PJA1 WILD-TYPE" "PJA1 WILD-TYPE" 
    TCGA-49-4505     TCGA-49-4506     TCGA-49-4507     TCGA-49-4510 
"PJA1 WILD-TYPE" "PJA1 WILD-TYPE" "PJA1 WILD-TYPE" "PJA1 WILD-TYPE" 
    TCGA-49-4512     TCGA-49-4514     TCGA-49-6742     TCGA-49-6743 
"PJA1 WILD-TYPE"   "PJA1 MUTATED" "PJA1 WILD-TYPE" "PJA1 WILD-TYPE" 
    TCGA-49-6744     TCGA-49-6745     TCGA-50-5044     TCGA-50-5045 
"PJA1 WILD-TYPE" "PJA1 WILD-TYPE" "PJA1 WILD-TYPE" "PJA1 WILD-TYPE" 
    TCGA-50-5049     TCGA-50-5051     TCGA-50-5055     TCGA-50-5066 
"PJA1 WILD-TYPE" "PJA1 WILD-TYPE" "PJA1 WILD-TYPE" "PJA1 WILD-TYPE" 
    TCGA-50-5068     TCGA-50-5072     TCGA-50-5930     TCGA-50-5931 
"PJA1 WILD-TYPE" "PJA1 WILD-TYPE" "PJA1 WILD-TYPE" "PJA1 WILD-TYPE" 
    TCGA-50-5932     TCGA-50-5933     TCGA-50-5935     TCGA-50-5936 
"PJA1 WILD-TYPE" "PJA1 WILD-TYPE" "PJA1 WILD-TYPE" "PJA1 WILD-TYPE" 
    TCGA-50-5939     TCGA-50-5941     TCGA-50-5942     TCGA-50-5944 
"PJA1 WILD-TYPE" "PJA1 WILD-TYPE" "PJA1 WILD-TYPE" "PJA1 WILD-TYPE" 
    TCGA-50-5946     TCGA-50-6590     TCGA-50-6591     TCGA-50-6592 
"PJA1 WILD-TYPE" "PJA1 WILD-TYPE" "PJA1 WILD-TYPE"   "PJA1 MUTATED" 
    TCGA-50-6593     TCGA-50-6594     TCGA-50-6595     TCGA-50-6597 
"PJA1 WILD-TYPE" "PJA1 WILD-TYPE" "PJA1 WILD-TYPE" "PJA1 WILD-TYPE" 
    TCGA-55-1592     TCGA-55-1594     TCGA-55-1595     TCGA-55-1596 
"PJA1 WILD-TYPE" "PJA1 WILD-TYPE" "PJA1 WILD-TYPE" "PJA1 WILD-TYPE" 
    TCGA-55-5899     TCGA-55-6543     TCGA-55-6642     TCGA-55-6712 
"PJA1 WILD-TYPE" "PJA1 WILD-TYPE" "PJA1 WILD-TYPE" "PJA1 WILD-TYPE" 
    TCGA-64-1676     TCGA-64-1677     TCGA-64-1678     TCGA-64-1680 
  "PJA1 MUTATED" "PJA1 WILD-TYPE" "PJA1 WILD-TYPE" "PJA1 WILD-TYPE" 
    TCGA-64-5774     TCGA-64-5775     TCGA-64-5778     TCGA-64-5779 
"PJA1 WILD-TYPE" "PJA1 WILD-TYPE" "PJA1 WILD-TYPE" "PJA1 WILD-TYPE" 
    TCGA-64-5781     TCGA-64-5815     TCGA-67-3770     TCGA-67-3771 
"PJA1 WILD-TYPE" "PJA1 WILD-TYPE" "PJA1 WILD-TYPE" "PJA1 WILD-TYPE" 
    TCGA-67-3772     TCGA-67-3773     TCGA-67-3774     TCGA-67-6215 
"PJA1 WILD-TYPE" "PJA1 WILD-TYPE" "PJA1 WILD-TYPE" "PJA1 WILD-TYPE" 
    TCGA-67-6216     TCGA-67-6217     TCGA-71-6725     TCGA-73-4658 
"PJA1 WILD-TYPE" "PJA1 WILD-TYPE" "PJA1 WILD-TYPE" "PJA1 WILD-TYPE" 
    TCGA-73-4659     TCGA-73-4662     TCGA-73-4666     TCGA-73-4668 
"PJA1 WILD-TYPE" "PJA1 WILD-TYPE" "PJA1 WILD-TYPE"   "PJA1 MUTATED" 
    TCGA-73-4670     TCGA-73-4675     TCGA-73-4676     TCGA-73-4677 
"PJA1 WILD-TYPE" "PJA1 WILD-TYPE" "PJA1 WILD-TYPE" "PJA1 WILD-TYPE" 
    TCGA-91-6828     TCGA-91-6829     TCGA-91-6831     TCGA-91-6835 
"PJA1 WILD-TYPE" "PJA1 WILD-TYPE" "PJA1 WILD-TYPE" "PJA1 WILD-TYPE" 
    TCGA-91-6836 
"PJA1 WILD-TYPE" 
[1] "hr=" "3.6"
D247V2, continuous
D247V3, binary
[1] "tbl2"
                cls
clus             [,1] [,2]
  PJA1 MUTATED      5    3
  PJA1 WILD-TYPE   88   76
        clus
vv       PJA1 MUTATED PJA1 WILD-TYPE
  FEMALE            5             88
  MALE              3             76
D247V4, continuous
[1] "Remove cluster labels:" "PJA1 MUTATED"          
clus
  PJA1 MUTATED PJA1 WILD-TYPE 
             1             11 
    TCGA-35-4122     TCGA-35-4123     TCGA-35-5375     TCGA-64-1677 
"PJA1 WILD-TYPE" "PJA1 WILD-TYPE" "PJA1 WILD-TYPE" "PJA1 WILD-TYPE" 
    TCGA-64-5778     TCGA-71-6725     TCGA-73-4659     TCGA-73-4662 
"PJA1 WILD-TYPE" "PJA1 WILD-TYPE" "PJA1 WILD-TYPE" "PJA1 WILD-TYPE" 
    TCGA-73-4666     TCGA-73-4676     TCGA-75-5122 
"PJA1 WILD-TYPE" "PJA1 WILD-TYPE" "PJA1 WILD-TYPE" 
D247V5, multiclass
D247V6, multiclass
    clus
vv   PJA1 MUTATED PJA1 WILD-TYPE
  T1            4             37
  T2            4            104
  T3            0             14
  T4            0              8
D247V7, multiclass
       clus
vv      PJA1 MUTATED PJA1 WILD-TYPE
  N0               6             89
  N1               1             36
  N2+N3            1             34
D247V8, multiclass
    clus
vv   PJA1 MUTATED PJA1 WILD-TYPE
  M0            8            129
  M1            0              9
  MX            0             22
D247V9, multiclass
     clus
vv    PJA1 MUTATED PJA1 WILD-TYPE
  I              6             82
  II             1             32
  III            1             38
  IV             0              9
D247V10, binary
[1] "tbl2"
                cls
clus             [,1] [,2]
  PJA1 MUTATED      0    8
  PJA1 WILD-TYPE   16  148
     clus
vv    PJA1 MUTATED PJA1 WILD-TYPE
  NO             0             16
  YES            8            148
D247V11, continuous
D247V12, continuous
D247V13, multiclass
                                             clus
vv                                            PJA1 MUTATED PJA1 WILD-TYPE
  CURRENT REFORMED SMOKER FOR < OR = 15 YEARS            4             58
  CURRENT REFORMED SMOKER FOR > 15 YEARS                 3             43
  CURRENT SMOKER                                         1             27
  LIFELONG NON-SMOKER                                    0             24
D247V14, continuous

Clustering(248) Variable = CD1A MUTATION ANALYSIS
D248V1, survival
                sevent
clus2             0  1
  CD1A MUTATED    2  2
  CD1A WILD-TYPE 97 48
  CD1A MUTATED CD1A WILD-TYPE 
             4            145 
  CD1A MUTATED CD1A WILD-TYPE 
             2             48 
$`CD1A MUTATED`
TCGA-05-4417 TCGA-49-4494 TCGA-50-6591 TCGA-67-3772 
       14.93        35.54         3.88         0.59 

$`CD1A WILD-TYPE`
TCGA-05-4249 TCGA-05-4250 TCGA-05-4382 TCGA-05-4384 TCGA-05-4390 TCGA-05-4396 
       38.07         3.98        19.92        14.01        37.02         9.96 
TCGA-05-4397 TCGA-05-4398 TCGA-05-4402 TCGA-05-4405 TCGA-05-4415 TCGA-05-4418 
       24.03        47.05         8.02        20.05         2.96         8.98 
TCGA-05-4420 TCGA-05-4424 TCGA-05-4426 TCGA-05-4427 TCGA-05-4430 TCGA-05-4432 
       29.95        30.02        26.01        26.01        25.02        25.02 
TCGA-05-4433 TCGA-05-4434 TCGA-05-5420 TCGA-05-5423 TCGA-05-5425 TCGA-05-5429 
       24.00        15.02         1.02         4.96         2.96         0.99 
TCGA-05-5715 TCGA-35-3615 TCGA-35-4122 TCGA-35-4123 TCGA-35-5375 TCGA-38-4625 
        2.04         0.46         7.36         5.95         8.68        47.61 
TCGA-38-4626 TCGA-38-4627 TCGA-38-4628 TCGA-38-4629 TCGA-38-4630 TCGA-38-4631 
       85.32        37.71        49.02        28.37        35.28        11.64 
TCGA-38-4632 TCGA-38-6178 TCGA-44-2655 TCGA-44-2656 TCGA-44-2657 TCGA-44-2659 
       44.61         5.19        18.87        19.10        13.15        17.39 
TCGA-44-2661 TCGA-44-2662 TCGA-44-2665 TCGA-44-2666 TCGA-44-2668 TCGA-44-3396 
        3.39        15.78        13.15         3.19         8.09        10.22 
TCGA-44-3398 TCGA-44-3918 TCGA-44-3919 TCGA-44-4112 TCGA-44-5643 TCGA-44-5645 
        8.32         6.44         6.21         4.60         3.48         6.84 
TCGA-44-6144 TCGA-44-6145 TCGA-44-6146 TCGA-44-6147 TCGA-44-6148 TCGA-44-6774 
        0.30         3.35         9.93         7.76         3.12         5.42 
TCGA-44-6775 TCGA-44-6776 TCGA-44-6777 TCGA-44-6778 TCGA-44-6779 TCGA-49-4486 
        2.70        63.72        32.45        36.49        16.41        76.21 
TCGA-49-4487 TCGA-49-4488 TCGA-49-4490 TCGA-49-4501 TCGA-49-4505 TCGA-49-4506 
       28.11        28.57        12.66        46.72        14.07        32.84 
TCGA-49-4507 TCGA-49-4510 TCGA-49-4512 TCGA-49-4514 TCGA-49-6742 TCGA-49-6743 
        8.81        29.46        29.75        43.20        15.02        12.13 
TCGA-49-6744 TCGA-49-6745 TCGA-50-5044 TCGA-50-5045 TCGA-50-5049 TCGA-50-5051 
       12.99         4.93        20.48        71.47        48.82        14.96 
TCGA-50-5055 TCGA-50-5066 TCGA-50-5068 TCGA-50-5072 TCGA-50-5930 TCGA-50-5931 
       25.81         9.76        49.28         8.05         9.27         8.78 
TCGA-50-5932 TCGA-50-5933 TCGA-50-5935 TCGA-50-5936 TCGA-50-5939 TCGA-50-5941 
       35.87        77.88        21.47         8.45        15.12         9.37 
TCGA-50-5942 TCGA-50-5944 TCGA-50-5946 TCGA-50-6590 TCGA-50-6592 TCGA-50-6593 
        4.44        12.26        11.47        42.31        25.51        11.05 
TCGA-50-6594 TCGA-50-6595 TCGA-50-6597 TCGA-55-1592 TCGA-55-1594 TCGA-55-1595 
       12.16         6.21        33.37        23.05        38.73        48.62 
TCGA-55-1596 TCGA-55-5899 TCGA-55-6543 TCGA-55-6642 TCGA-55-6712 TCGA-64-1676 
       45.17         2.86         0.07        32.61         0.79        56.81 
TCGA-64-1677 TCGA-64-1678 TCGA-64-1680 TCGA-64-5774 TCGA-64-5775 TCGA-64-5778 
       20.65        39.09        37.02        83.84         0.10        30.44 
TCGA-64-5779 TCGA-64-5781 TCGA-64-5815 TCGA-67-3770 TCGA-67-3771 TCGA-67-3773 
       16.67        39.52         7.33         0.99         1.97         2.04 
TCGA-67-3774 TCGA-67-6215 TCGA-67-6216 TCGA-67-6217 TCGA-71-6725 TCGA-73-4658 
        0.59         0.89         0.69        13.87         2.01        52.57 
TCGA-73-4659 TCGA-73-4662 TCGA-73-4666 TCGA-73-4668 TCGA-73-4670 TCGA-73-4675 
       23.38        29.95        20.28        15.35         0.46         1.32 
TCGA-73-4676 TCGA-73-4677 TCGA-91-6828 TCGA-91-6829 TCGA-91-6831 TCGA-91-6835 
        4.01         1.25         1.22        41.33         1.28         1.15 
TCGA-91-6836 
        0.36 

  CD1A MUTATED CD1A WILD-TYPE 
          0.59           0.07 
  CD1A MUTATED CD1A WILD-TYPE 
         35.54          85.32 
  CD1A MUTATED CD1A WILD-TYPE 
         9.405         13.870 
[1] "0.6 - 35.5 (9.4)"  "0.1 - 85.3 (13.9)"
    TCGA-05-4249     TCGA-05-4250     TCGA-05-4382     TCGA-05-4384 
"CD1A WILD-TYPE" "CD1A WILD-TYPE" "CD1A WILD-TYPE" "CD1A WILD-TYPE" 
    TCGA-05-4390     TCGA-05-4396     TCGA-05-4397     TCGA-05-4398 
"CD1A WILD-TYPE" "CD1A WILD-TYPE" "CD1A WILD-TYPE" "CD1A WILD-TYPE" 
    TCGA-05-4402     TCGA-05-4405     TCGA-05-4415     TCGA-05-4417 
"CD1A WILD-TYPE" "CD1A WILD-TYPE" "CD1A WILD-TYPE"   "CD1A MUTATED" 
    TCGA-05-4418     TCGA-05-4420     TCGA-05-4424     TCGA-05-4426 
"CD1A WILD-TYPE" "CD1A WILD-TYPE" "CD1A WILD-TYPE" "CD1A WILD-TYPE" 
    TCGA-05-4427     TCGA-05-4430     TCGA-05-4432     TCGA-05-4433 
"CD1A WILD-TYPE" "CD1A WILD-TYPE" "CD1A WILD-TYPE" "CD1A WILD-TYPE" 
    TCGA-05-4434     TCGA-05-5420     TCGA-05-5423     TCGA-05-5425 
"CD1A WILD-TYPE" "CD1A WILD-TYPE" "CD1A WILD-TYPE" "CD1A WILD-TYPE" 
    TCGA-05-5429     TCGA-05-5715     TCGA-35-3615     TCGA-35-4122 
"CD1A WILD-TYPE" "CD1A WILD-TYPE" "CD1A WILD-TYPE" "CD1A WILD-TYPE" 
    TCGA-35-4123     TCGA-35-5375     TCGA-38-4625     TCGA-38-4626 
"CD1A WILD-TYPE" "CD1A WILD-TYPE" "CD1A WILD-TYPE" "CD1A WILD-TYPE" 
    TCGA-38-4627     TCGA-38-4628     TCGA-38-4629     TCGA-38-4630 
"CD1A WILD-TYPE" "CD1A WILD-TYPE" "CD1A WILD-TYPE" "CD1A WILD-TYPE" 
    TCGA-38-4631     TCGA-38-4632     TCGA-38-6178     TCGA-44-2655 
"CD1A WILD-TYPE" "CD1A WILD-TYPE" "CD1A WILD-TYPE" "CD1A WILD-TYPE" 
    TCGA-44-2656     TCGA-44-2657     TCGA-44-2659     TCGA-44-2661 
"CD1A WILD-TYPE" "CD1A WILD-TYPE" "CD1A WILD-TYPE" "CD1A WILD-TYPE" 
    TCGA-44-2662     TCGA-44-2665     TCGA-44-2666     TCGA-44-2668 
"CD1A WILD-TYPE" "CD1A WILD-TYPE" "CD1A WILD-TYPE" "CD1A WILD-TYPE" 
    TCGA-44-3396     TCGA-44-3398     TCGA-44-3918     TCGA-44-3919 
"CD1A WILD-TYPE" "CD1A WILD-TYPE" "CD1A WILD-TYPE" "CD1A WILD-TYPE" 
    TCGA-44-4112     TCGA-44-5643     TCGA-44-5645     TCGA-44-6144 
"CD1A WILD-TYPE" "CD1A WILD-TYPE" "CD1A WILD-TYPE" "CD1A WILD-TYPE" 
    TCGA-44-6145     TCGA-44-6146     TCGA-44-6147     TCGA-44-6148 
"CD1A WILD-TYPE" "CD1A WILD-TYPE" "CD1A WILD-TYPE" "CD1A WILD-TYPE" 
    TCGA-44-6774     TCGA-44-6775     TCGA-44-6776     TCGA-44-6777 
"CD1A WILD-TYPE" "CD1A WILD-TYPE" "CD1A WILD-TYPE" "CD1A WILD-TYPE" 
    TCGA-44-6778     TCGA-44-6779     TCGA-49-4486     TCGA-49-4487 
"CD1A WILD-TYPE" "CD1A WILD-TYPE" "CD1A WILD-TYPE" "CD1A WILD-TYPE" 
    TCGA-49-4488     TCGA-49-4490     TCGA-49-4494     TCGA-49-4501 
"CD1A WILD-TYPE" "CD1A WILD-TYPE"   "CD1A MUTATED" "CD1A WILD-TYPE" 
    TCGA-49-4505     TCGA-49-4506     TCGA-49-4507     TCGA-49-4510 
"CD1A WILD-TYPE" "CD1A WILD-TYPE" "CD1A WILD-TYPE" "CD1A WILD-TYPE" 
    TCGA-49-4512     TCGA-49-4514     TCGA-49-6742     TCGA-49-6743 
"CD1A WILD-TYPE" "CD1A WILD-TYPE" "CD1A WILD-TYPE" "CD1A WILD-TYPE" 
    TCGA-49-6744     TCGA-49-6745     TCGA-50-5044     TCGA-50-5045 
"CD1A WILD-TYPE" "CD1A WILD-TYPE" "CD1A WILD-TYPE" "CD1A WILD-TYPE" 
    TCGA-50-5049     TCGA-50-5051     TCGA-50-5055     TCGA-50-5066 
"CD1A WILD-TYPE" "CD1A WILD-TYPE" "CD1A WILD-TYPE" "CD1A WILD-TYPE" 
    TCGA-50-5068     TCGA-50-5072     TCGA-50-5930     TCGA-50-5931 
"CD1A WILD-TYPE" "CD1A WILD-TYPE" "CD1A WILD-TYPE" "CD1A WILD-TYPE" 
    TCGA-50-5932     TCGA-50-5933     TCGA-50-5935     TCGA-50-5936 
"CD1A WILD-TYPE" "CD1A WILD-TYPE" "CD1A WILD-TYPE" "CD1A WILD-TYPE" 
    TCGA-50-5939     TCGA-50-5941     TCGA-50-5942     TCGA-50-5944 
"CD1A WILD-TYPE" "CD1A WILD-TYPE" "CD1A WILD-TYPE" "CD1A WILD-TYPE" 
    TCGA-50-5946     TCGA-50-6590     TCGA-50-6591     TCGA-50-6592 
"CD1A WILD-TYPE" "CD1A WILD-TYPE"   "CD1A MUTATED" "CD1A WILD-TYPE" 
    TCGA-50-6593     TCGA-50-6594     TCGA-50-6595     TCGA-50-6597 
"CD1A WILD-TYPE" "CD1A WILD-TYPE" "CD1A WILD-TYPE" "CD1A WILD-TYPE" 
    TCGA-55-1592     TCGA-55-1594     TCGA-55-1595     TCGA-55-1596 
"CD1A WILD-TYPE" "CD1A WILD-TYPE" "CD1A WILD-TYPE" "CD1A WILD-TYPE" 
    TCGA-55-5899     TCGA-55-6543     TCGA-55-6642     TCGA-55-6712 
"CD1A WILD-TYPE" "CD1A WILD-TYPE" "CD1A WILD-TYPE" "CD1A WILD-TYPE" 
    TCGA-64-1676     TCGA-64-1677     TCGA-64-1678     TCGA-64-1680 
"CD1A WILD-TYPE" "CD1A WILD-TYPE" "CD1A WILD-TYPE" "CD1A WILD-TYPE" 
    TCGA-64-5774     TCGA-64-5775     TCGA-64-5778     TCGA-64-5779 
"CD1A WILD-TYPE" "CD1A WILD-TYPE" "CD1A WILD-TYPE" "CD1A WILD-TYPE" 
    TCGA-64-5781     TCGA-64-5815     TCGA-67-3770     TCGA-67-3771 
"CD1A WILD-TYPE" "CD1A WILD-TYPE" "CD1A WILD-TYPE" "CD1A WILD-TYPE" 
    TCGA-67-3772     TCGA-67-3773     TCGA-67-3774     TCGA-67-6215 
  "CD1A MUTATED" "CD1A WILD-TYPE" "CD1A WILD-TYPE" "CD1A WILD-TYPE" 
    TCGA-67-6216     TCGA-67-6217     TCGA-71-6725     TCGA-73-4658 
"CD1A WILD-TYPE" "CD1A WILD-TYPE" "CD1A WILD-TYPE" "CD1A WILD-TYPE" 
    TCGA-73-4659     TCGA-73-4662     TCGA-73-4666     TCGA-73-4668 
"CD1A WILD-TYPE" "CD1A WILD-TYPE" "CD1A WILD-TYPE" "CD1A WILD-TYPE" 
    TCGA-73-4670     TCGA-73-4675     TCGA-73-4676     TCGA-73-4677 
"CD1A WILD-TYPE" "CD1A WILD-TYPE" "CD1A WILD-TYPE" "CD1A WILD-TYPE" 
    TCGA-91-6828     TCGA-91-6829     TCGA-91-6831     TCGA-91-6835 
"CD1A WILD-TYPE" "CD1A WILD-TYPE" "CD1A WILD-TYPE" "CD1A WILD-TYPE" 
    TCGA-91-6836 
"CD1A WILD-TYPE" 
    TCGA-05-4249     TCGA-05-4250     TCGA-05-4382     TCGA-05-4384 
"CD1A WILD-TYPE" "CD1A WILD-TYPE" "CD1A WILD-TYPE" "CD1A WILD-TYPE" 
    TCGA-05-4390     TCGA-05-4396     TCGA-05-4397     TCGA-05-4398 
"CD1A WILD-TYPE" "CD1A WILD-TYPE" "CD1A WILD-TYPE" "CD1A WILD-TYPE" 
    TCGA-05-4402     TCGA-05-4405     TCGA-05-4415     TCGA-05-4417 
"CD1A WILD-TYPE" "CD1A WILD-TYPE" "CD1A WILD-TYPE"   "CD1A MUTATED" 
    TCGA-05-4418     TCGA-05-4420     TCGA-05-4424     TCGA-05-4426 
"CD1A WILD-TYPE" "CD1A WILD-TYPE" "CD1A WILD-TYPE" "CD1A WILD-TYPE" 
    TCGA-05-4427     TCGA-05-4430     TCGA-05-4432     TCGA-05-4433 
"CD1A WILD-TYPE" "CD1A WILD-TYPE" "CD1A WILD-TYPE" "CD1A WILD-TYPE" 
    TCGA-05-4434     TCGA-05-5420     TCGA-05-5423     TCGA-05-5425 
"CD1A WILD-TYPE" "CD1A WILD-TYPE" "CD1A WILD-TYPE" "CD1A WILD-TYPE" 
    TCGA-05-5429     TCGA-05-5715     TCGA-35-3615     TCGA-35-4122 
"CD1A WILD-TYPE" "CD1A WILD-TYPE" "CD1A WILD-TYPE" "CD1A WILD-TYPE" 
    TCGA-35-4123     TCGA-35-5375     TCGA-38-4625     TCGA-38-4626 
"CD1A WILD-TYPE" "CD1A WILD-TYPE" "CD1A WILD-TYPE" "CD1A WILD-TYPE" 
    TCGA-38-4627     TCGA-38-4628     TCGA-38-4629     TCGA-38-4630 
"CD1A WILD-TYPE" "CD1A WILD-TYPE" "CD1A WILD-TYPE" "CD1A WILD-TYPE" 
    TCGA-38-4631     TCGA-38-4632     TCGA-38-6178     TCGA-44-2655 
"CD1A WILD-TYPE" "CD1A WILD-TYPE" "CD1A WILD-TYPE" "CD1A WILD-TYPE" 
    TCGA-44-2656     TCGA-44-2657     TCGA-44-2659     TCGA-44-2661 
"CD1A WILD-TYPE" "CD1A WILD-TYPE" "CD1A WILD-TYPE" "CD1A WILD-TYPE" 
    TCGA-44-2662     TCGA-44-2665     TCGA-44-2666     TCGA-44-2668 
"CD1A WILD-TYPE" "CD1A WILD-TYPE" "CD1A WILD-TYPE" "CD1A WILD-TYPE" 
    TCGA-44-3396     TCGA-44-3398     TCGA-44-3918     TCGA-44-3919 
"CD1A WILD-TYPE" "CD1A WILD-TYPE" "CD1A WILD-TYPE" "CD1A WILD-TYPE" 
    TCGA-44-4112     TCGA-44-5643     TCGA-44-5645     TCGA-44-6144 
"CD1A WILD-TYPE" "CD1A WILD-TYPE" "CD1A WILD-TYPE" "CD1A WILD-TYPE" 
    TCGA-44-6145     TCGA-44-6146     TCGA-44-6147     TCGA-44-6148 
"CD1A WILD-TYPE" "CD1A WILD-TYPE" "CD1A WILD-TYPE" "CD1A WILD-TYPE" 
    TCGA-44-6774     TCGA-44-6775     TCGA-44-6776     TCGA-44-6777 
"CD1A WILD-TYPE" "CD1A WILD-TYPE" "CD1A WILD-TYPE" "CD1A WILD-TYPE" 
    TCGA-44-6778     TCGA-44-6779     TCGA-49-4486     TCGA-49-4487 
"CD1A WILD-TYPE" "CD1A WILD-TYPE" "CD1A WILD-TYPE" "CD1A WILD-TYPE" 
    TCGA-49-4488     TCGA-49-4490     TCGA-49-4494     TCGA-49-4501 
"CD1A WILD-TYPE" "CD1A WILD-TYPE"   "CD1A MUTATED" "CD1A WILD-TYPE" 
    TCGA-49-4505     TCGA-49-4506     TCGA-49-4507     TCGA-49-4510 
"CD1A WILD-TYPE" "CD1A WILD-TYPE" "CD1A WILD-TYPE" "CD1A WILD-TYPE" 
    TCGA-49-4512     TCGA-49-4514     TCGA-49-6742     TCGA-49-6743 
"CD1A WILD-TYPE" "CD1A WILD-TYPE" "CD1A WILD-TYPE" "CD1A WILD-TYPE" 
    TCGA-49-6744     TCGA-49-6745     TCGA-50-5044     TCGA-50-5045 
"CD1A WILD-TYPE" "CD1A WILD-TYPE" "CD1A WILD-TYPE" "CD1A WILD-TYPE" 
    TCGA-50-5049     TCGA-50-5051     TCGA-50-5055     TCGA-50-5066 
"CD1A WILD-TYPE" "CD1A WILD-TYPE" "CD1A WILD-TYPE" "CD1A WILD-TYPE" 
    TCGA-50-5068     TCGA-50-5072     TCGA-50-5930     TCGA-50-5931 
"CD1A WILD-TYPE" "CD1A WILD-TYPE" "CD1A WILD-TYPE" "CD1A WILD-TYPE" 
    TCGA-50-5932     TCGA-50-5933     TCGA-50-5935     TCGA-50-5936 
"CD1A WILD-TYPE" "CD1A WILD-TYPE" "CD1A WILD-TYPE" "CD1A WILD-TYPE" 
    TCGA-50-5939     TCGA-50-5941     TCGA-50-5942     TCGA-50-5944 
"CD1A WILD-TYPE" "CD1A WILD-TYPE" "CD1A WILD-TYPE" "CD1A WILD-TYPE" 
    TCGA-50-5946     TCGA-50-6590     TCGA-50-6591     TCGA-50-6592 
"CD1A WILD-TYPE" "CD1A WILD-TYPE"   "CD1A MUTATED" "CD1A WILD-TYPE" 
    TCGA-50-6593     TCGA-50-6594     TCGA-50-6595     TCGA-50-6597 
"CD1A WILD-TYPE" "CD1A WILD-TYPE" "CD1A WILD-TYPE" "CD1A WILD-TYPE" 
    TCGA-55-1592     TCGA-55-1594     TCGA-55-1595     TCGA-55-1596 
"CD1A WILD-TYPE" "CD1A WILD-TYPE" "CD1A WILD-TYPE" "CD1A WILD-TYPE" 
    TCGA-55-5899     TCGA-55-6543     TCGA-55-6642     TCGA-55-6712 
"CD1A WILD-TYPE" "CD1A WILD-TYPE" "CD1A WILD-TYPE" "CD1A WILD-TYPE" 
    TCGA-64-1676     TCGA-64-1677     TCGA-64-1678     TCGA-64-1680 
"CD1A WILD-TYPE" "CD1A WILD-TYPE" "CD1A WILD-TYPE" "CD1A WILD-TYPE" 
    TCGA-64-5774     TCGA-64-5775     TCGA-64-5778     TCGA-64-5779 
"CD1A WILD-TYPE" "CD1A WILD-TYPE" "CD1A WILD-TYPE" "CD1A WILD-TYPE" 
    TCGA-64-5781     TCGA-64-5815     TCGA-67-3770     TCGA-67-3771 
"CD1A WILD-TYPE" "CD1A WILD-TYPE" "CD1A WILD-TYPE" "CD1A WILD-TYPE" 
    TCGA-67-3772     TCGA-67-3773     TCGA-67-3774     TCGA-67-6215 
  "CD1A MUTATED" "CD1A WILD-TYPE" "CD1A WILD-TYPE" "CD1A WILD-TYPE" 
    TCGA-67-6216     TCGA-67-6217     TCGA-71-6725     TCGA-73-4658 
"CD1A WILD-TYPE" "CD1A WILD-TYPE" "CD1A WILD-TYPE" "CD1A WILD-TYPE" 
    TCGA-73-4659     TCGA-73-4662     TCGA-73-4666     TCGA-73-4668 
"CD1A WILD-TYPE" "CD1A WILD-TYPE" "CD1A WILD-TYPE" "CD1A WILD-TYPE" 
    TCGA-73-4670     TCGA-73-4675     TCGA-73-4676     TCGA-73-4677 
"CD1A WILD-TYPE" "CD1A WILD-TYPE" "CD1A WILD-TYPE" "CD1A WILD-TYPE" 
    TCGA-91-6828     TCGA-91-6829     TCGA-91-6831     TCGA-91-6835 
"CD1A WILD-TYPE" "CD1A WILD-TYPE" "CD1A WILD-TYPE" "CD1A WILD-TYPE" 
    TCGA-91-6836 
"CD1A WILD-TYPE" 
    TCGA-05-4249     TCGA-05-4250     TCGA-05-4382     TCGA-05-4384 
"CD1A WILD-TYPE" "CD1A WILD-TYPE" "CD1A WILD-TYPE" "CD1A WILD-TYPE" 
    TCGA-05-4390     TCGA-05-4396     TCGA-05-4397     TCGA-05-4398 
"CD1A WILD-TYPE" "CD1A WILD-TYPE" "CD1A WILD-TYPE" "CD1A WILD-TYPE" 
    TCGA-05-4402     TCGA-05-4405     TCGA-05-4415     TCGA-05-4417 
"CD1A WILD-TYPE" "CD1A WILD-TYPE" "CD1A WILD-TYPE"   "CD1A MUTATED" 
    TCGA-05-4418     TCGA-05-4420     TCGA-05-4424     TCGA-05-4426 
"CD1A WILD-TYPE" "CD1A WILD-TYPE" "CD1A WILD-TYPE" "CD1A WILD-TYPE" 
    TCGA-05-4427     TCGA-05-4430     TCGA-05-4432     TCGA-05-4433 
"CD1A WILD-TYPE" "CD1A WILD-TYPE" "CD1A WILD-TYPE" "CD1A WILD-TYPE" 
    TCGA-05-4434     TCGA-05-5420     TCGA-05-5423     TCGA-05-5425 
"CD1A WILD-TYPE" "CD1A WILD-TYPE" "CD1A WILD-TYPE" "CD1A WILD-TYPE" 
    TCGA-05-5429     TCGA-05-5715     TCGA-35-3615     TCGA-35-4122 
"CD1A WILD-TYPE" "CD1A WILD-TYPE" "CD1A WILD-TYPE" "CD1A WILD-TYPE" 
    TCGA-35-4123     TCGA-35-5375     TCGA-38-4625     TCGA-38-4626 
"CD1A WILD-TYPE" "CD1A WILD-TYPE" "CD1A WILD-TYPE" "CD1A WILD-TYPE" 
    TCGA-38-4627     TCGA-38-4628     TCGA-38-4629     TCGA-38-4630 
"CD1A WILD-TYPE" "CD1A WILD-TYPE" "CD1A WILD-TYPE" "CD1A WILD-TYPE" 
    TCGA-38-4631     TCGA-38-4632     TCGA-38-6178     TCGA-44-2655 
"CD1A WILD-TYPE" "CD1A WILD-TYPE" "CD1A WILD-TYPE" "CD1A WILD-TYPE" 
    TCGA-44-2656     TCGA-44-2657     TCGA-44-2659     TCGA-44-2661 
"CD1A WILD-TYPE" "CD1A WILD-TYPE" "CD1A WILD-TYPE" "CD1A WILD-TYPE" 
    TCGA-44-2662     TCGA-44-2665     TCGA-44-2666     TCGA-44-2668 
"CD1A WILD-TYPE" "CD1A WILD-TYPE" "CD1A WILD-TYPE" "CD1A WILD-TYPE" 
    TCGA-44-3396     TCGA-44-3398     TCGA-44-3918     TCGA-44-3919 
"CD1A WILD-TYPE" "CD1A WILD-TYPE" "CD1A WILD-TYPE" "CD1A WILD-TYPE" 
    TCGA-44-4112     TCGA-44-5643     TCGA-44-5645     TCGA-44-6144 
"CD1A WILD-TYPE" "CD1A WILD-TYPE" "CD1A WILD-TYPE" "CD1A WILD-TYPE" 
    TCGA-44-6145     TCGA-44-6146     TCGA-44-6147     TCGA-44-6148 
"CD1A WILD-TYPE" "CD1A WILD-TYPE" "CD1A WILD-TYPE" "CD1A WILD-TYPE" 
    TCGA-44-6774     TCGA-44-6775     TCGA-44-6776     TCGA-44-6777 
"CD1A WILD-TYPE" "CD1A WILD-TYPE" "CD1A WILD-TYPE" "CD1A WILD-TYPE" 
    TCGA-44-6778     TCGA-44-6779     TCGA-49-4486     TCGA-49-4487 
"CD1A WILD-TYPE" "CD1A WILD-TYPE" "CD1A WILD-TYPE" "CD1A WILD-TYPE" 
    TCGA-49-4488     TCGA-49-4490     TCGA-49-4494     TCGA-49-4501 
"CD1A WILD-TYPE" "CD1A WILD-TYPE"   "CD1A MUTATED" "CD1A WILD-TYPE" 
    TCGA-49-4505     TCGA-49-4506     TCGA-49-4507     TCGA-49-4510 
"CD1A WILD-TYPE" "CD1A WILD-TYPE" "CD1A WILD-TYPE" "CD1A WILD-TYPE" 
    TCGA-49-4512     TCGA-49-4514     TCGA-49-6742     TCGA-49-6743 
"CD1A WILD-TYPE" "CD1A WILD-TYPE" "CD1A WILD-TYPE" "CD1A WILD-TYPE" 
    TCGA-49-6744     TCGA-49-6745     TCGA-50-5044     TCGA-50-5045 
"CD1A WILD-TYPE" "CD1A WILD-TYPE" "CD1A WILD-TYPE" "CD1A WILD-TYPE" 
    TCGA-50-5049     TCGA-50-5051     TCGA-50-5055     TCGA-50-5066 
"CD1A WILD-TYPE" "CD1A WILD-TYPE" "CD1A WILD-TYPE" "CD1A WILD-TYPE" 
    TCGA-50-5068     TCGA-50-5072     TCGA-50-5930     TCGA-50-5931 
"CD1A WILD-TYPE" "CD1A WILD-TYPE" "CD1A WILD-TYPE" "CD1A WILD-TYPE" 
    TCGA-50-5932     TCGA-50-5933     TCGA-50-5935     TCGA-50-5936 
"CD1A WILD-TYPE" "CD1A WILD-TYPE" "CD1A WILD-TYPE" "CD1A WILD-TYPE" 
    TCGA-50-5939     TCGA-50-5941     TCGA-50-5942     TCGA-50-5944 
"CD1A WILD-TYPE" "CD1A WILD-TYPE" "CD1A WILD-TYPE" "CD1A WILD-TYPE" 
    TCGA-50-5946     TCGA-50-6590     TCGA-50-6591     TCGA-50-6592 
"CD1A WILD-TYPE" "CD1A WILD-TYPE"   "CD1A MUTATED" "CD1A WILD-TYPE" 
    TCGA-50-6593     TCGA-50-6594     TCGA-50-6595     TCGA-50-6597 
"CD1A WILD-TYPE" "CD1A WILD-TYPE" "CD1A WILD-TYPE" "CD1A WILD-TYPE" 
    TCGA-55-1592     TCGA-55-1594     TCGA-55-1595     TCGA-55-1596 
"CD1A WILD-TYPE" "CD1A WILD-TYPE" "CD1A WILD-TYPE" "CD1A WILD-TYPE" 
    TCGA-55-5899     TCGA-55-6543     TCGA-55-6642     TCGA-55-6712 
"CD1A WILD-TYPE" "CD1A WILD-TYPE" "CD1A WILD-TYPE" "CD1A WILD-TYPE" 
    TCGA-64-1676     TCGA-64-1677     TCGA-64-1678     TCGA-64-1680 
"CD1A WILD-TYPE" "CD1A WILD-TYPE" "CD1A WILD-TYPE" "CD1A WILD-TYPE" 
    TCGA-64-5774     TCGA-64-5775     TCGA-64-5778     TCGA-64-5779 
"CD1A WILD-TYPE" "CD1A WILD-TYPE" "CD1A WILD-TYPE" "CD1A WILD-TYPE" 
    TCGA-64-5781     TCGA-64-5815     TCGA-67-3770     TCGA-67-3771 
"CD1A WILD-TYPE" "CD1A WILD-TYPE" "CD1A WILD-TYPE" "CD1A WILD-TYPE" 
    TCGA-67-3772     TCGA-67-3773     TCGA-67-3774     TCGA-67-6215 
  "CD1A MUTATED" "CD1A WILD-TYPE" "CD1A WILD-TYPE" "CD1A WILD-TYPE" 
    TCGA-67-6216     TCGA-67-6217     TCGA-71-6725     TCGA-73-4658 
"CD1A WILD-TYPE" "CD1A WILD-TYPE" "CD1A WILD-TYPE" "CD1A WILD-TYPE" 
    TCGA-73-4659     TCGA-73-4662     TCGA-73-4666     TCGA-73-4668 
"CD1A WILD-TYPE" "CD1A WILD-TYPE" "CD1A WILD-TYPE" "CD1A WILD-TYPE" 
    TCGA-73-4670     TCGA-73-4675     TCGA-73-4676     TCGA-73-4677 
"CD1A WILD-TYPE" "CD1A WILD-TYPE" "CD1A WILD-TYPE" "CD1A WILD-TYPE" 
    TCGA-91-6828     TCGA-91-6829     TCGA-91-6831     TCGA-91-6835 
"CD1A WILD-TYPE" "CD1A WILD-TYPE" "CD1A WILD-TYPE" "CD1A WILD-TYPE" 
    TCGA-91-6836 
"CD1A WILD-TYPE" 
[1] "hr=" "2.4"
D248V2, continuous
D248V3, binary
[1] "tbl2"
                cls
clus             [,1] [,2]
  CD1A MUTATED      3    1
  CD1A WILD-TYPE   90   78
        clus
vv       CD1A MUTATED CD1A WILD-TYPE
  FEMALE            3             90
  MALE              1             78
D248V4, continuous
D248V5, multiclass
D248V6, multiclass
    clus
vv   CD1A MUTATED CD1A WILD-TYPE
  T1            0             41
  T2            3            105
  T3            1             13
  T4            0              8
D248V7, multiclass
       clus
vv      CD1A MUTATED CD1A WILD-TYPE
  N0               3             92
  N1               0             37
  N2+N3            1             34
D248V8, multiclass
    clus
vv   CD1A MUTATED CD1A WILD-TYPE
  M0            3            134
  M1            1              8
  MX            0             22
D248V9, multiclass
     clus
vv    CD1A MUTATED CD1A WILD-TYPE
  I              2             86
  II             0             33
  III            1             38
  IV             1              8
D248V10, binary
[1] "tbl2"
                cls
clus             [,1] [,2]
  CD1A MUTATED      0    4
  CD1A WILD-TYPE   16  152
     clus
vv    CD1A MUTATED CD1A WILD-TYPE
  NO             0             16
  YES            4            152
D248V11, continuous
[1] "Remove cluster labels:" "CD1A MUTATED"          
clus
  CD1A MUTATED CD1A WILD-TYPE 
             2            112 
    TCGA-05-4244     TCGA-05-4249     TCGA-05-4250     TCGA-05-4382 
"CD1A WILD-TYPE" "CD1A WILD-TYPE" "CD1A WILD-TYPE" "CD1A WILD-TYPE" 
    TCGA-05-4384     TCGA-05-4389     TCGA-05-4390     TCGA-05-4395 
"CD1A WILD-TYPE" "CD1A WILD-TYPE" "CD1A WILD-TYPE" "CD1A WILD-TYPE" 
    TCGA-05-4396     TCGA-05-4397     TCGA-05-4398     TCGA-05-4402 
"CD1A WILD-TYPE" "CD1A WILD-TYPE" "CD1A WILD-TYPE" "CD1A WILD-TYPE" 
    TCGA-05-4405     TCGA-05-4410     TCGA-05-4415     TCGA-05-4418 
"CD1A WILD-TYPE" "CD1A WILD-TYPE" "CD1A WILD-TYPE" "CD1A WILD-TYPE" 
    TCGA-05-4420     TCGA-05-4422     TCGA-05-4424     TCGA-05-4425 
"CD1A WILD-TYPE" "CD1A WILD-TYPE" "CD1A WILD-TYPE" "CD1A WILD-TYPE" 
    TCGA-05-4426     TCGA-05-4427     TCGA-05-4430     TCGA-05-4432 
"CD1A WILD-TYPE" "CD1A WILD-TYPE" "CD1A WILD-TYPE" "CD1A WILD-TYPE" 
    TCGA-05-4433     TCGA-05-4434     TCGA-05-5420     TCGA-05-5423 
"CD1A WILD-TYPE" "CD1A WILD-TYPE" "CD1A WILD-TYPE" "CD1A WILD-TYPE" 
    TCGA-05-5425     TCGA-05-5428     TCGA-35-4122     TCGA-35-4123 
"CD1A WILD-TYPE" "CD1A WILD-TYPE" "CD1A WILD-TYPE" "CD1A WILD-TYPE" 
    TCGA-35-5375     TCGA-38-4625     TCGA-38-4626     TCGA-38-4629 
"CD1A WILD-TYPE" "CD1A WILD-TYPE" "CD1A WILD-TYPE" "CD1A WILD-TYPE" 
    TCGA-38-4631     TCGA-38-4632     TCGA-44-2655     TCGA-44-2656 
"CD1A WILD-TYPE" "CD1A WILD-TYPE" "CD1A WILD-TYPE" "CD1A WILD-TYPE" 
    TCGA-44-2657     TCGA-44-2659     TCGA-44-2662     TCGA-44-2666 
"CD1A WILD-TYPE" "CD1A WILD-TYPE" "CD1A WILD-TYPE" "CD1A WILD-TYPE" 
    TCGA-44-2668     TCGA-44-3396     TCGA-44-3398     TCGA-44-3918 
"CD1A WILD-TYPE" "CD1A WILD-TYPE" "CD1A WILD-TYPE" "CD1A WILD-TYPE" 
    TCGA-44-4112     TCGA-44-5643     TCGA-44-5645     TCGA-44-6144 
"CD1A WILD-TYPE" "CD1A WILD-TYPE" "CD1A WILD-TYPE" "CD1A WILD-TYPE" 
    TCGA-44-6145     TCGA-44-6146     TCGA-44-6148     TCGA-44-6774 
"CD1A WILD-TYPE" "CD1A WILD-TYPE" "CD1A WILD-TYPE" "CD1A WILD-TYPE" 
    TCGA-44-6775     TCGA-44-6776     TCGA-44-6777     TCGA-44-6778 
"CD1A WILD-TYPE" "CD1A WILD-TYPE" "CD1A WILD-TYPE" "CD1A WILD-TYPE" 
    TCGA-44-6779     TCGA-49-4486     TCGA-49-4487     TCGA-49-4490 
"CD1A WILD-TYPE" "CD1A WILD-TYPE" "CD1A WILD-TYPE" "CD1A WILD-TYPE" 
    TCGA-49-4505     TCGA-49-4506     TCGA-49-4507     TCGA-49-4510 
"CD1A WILD-TYPE" "CD1A WILD-TYPE" "CD1A WILD-TYPE" "CD1A WILD-TYPE" 
    TCGA-49-4514     TCGA-49-6742     TCGA-49-6743     TCGA-49-6744 
"CD1A WILD-TYPE" "CD1A WILD-TYPE" "CD1A WILD-TYPE" "CD1A WILD-TYPE" 
    TCGA-49-6745     TCGA-49-6767     TCGA-50-5051     TCGA-50-5072 
"CD1A WILD-TYPE" "CD1A WILD-TYPE" "CD1A WILD-TYPE" "CD1A WILD-TYPE" 
    TCGA-50-5931     TCGA-50-5939     TCGA-50-5941     TCGA-50-5942 
"CD1A WILD-TYPE" "CD1A WILD-TYPE" "CD1A WILD-TYPE" "CD1A WILD-TYPE" 
    TCGA-50-6590     TCGA-55-1596     TCGA-55-6543     TCGA-64-1676 
"CD1A WILD-TYPE" "CD1A WILD-TYPE" "CD1A WILD-TYPE" "CD1A WILD-TYPE" 
    TCGA-64-1677     TCGA-64-1678     TCGA-64-1680     TCGA-64-5774 
"CD1A WILD-TYPE" "CD1A WILD-TYPE" "CD1A WILD-TYPE" "CD1A WILD-TYPE" 
    TCGA-64-5775     TCGA-64-5778     TCGA-64-5779     TCGA-64-5781 
"CD1A WILD-TYPE" "CD1A WILD-TYPE" "CD1A WILD-TYPE" "CD1A WILD-TYPE" 
    TCGA-64-5815     TCGA-73-4658     TCGA-73-4659     TCGA-73-4662 
"CD1A WILD-TYPE" "CD1A WILD-TYPE" "CD1A WILD-TYPE" "CD1A WILD-TYPE" 
    TCGA-73-4666     TCGA-73-4668     TCGA-73-4670     TCGA-73-4675 
"CD1A WILD-TYPE" "CD1A WILD-TYPE" "CD1A WILD-TYPE" "CD1A WILD-TYPE" 
    TCGA-73-4676     TCGA-75-5122     TCGA-75-5125     TCGA-75-5126 
"CD1A WILD-TYPE" "CD1A WILD-TYPE" "CD1A WILD-TYPE" "CD1A WILD-TYPE" 
    TCGA-75-6203     TCGA-75-6206     TCGA-75-6207     TCGA-75-6211 
"CD1A WILD-TYPE" "CD1A WILD-TYPE" "CD1A WILD-TYPE" "CD1A WILD-TYPE" 
    TCGA-80-5611     TCGA-91-6829     TCGA-91-6835     TCGA-91-6836 
"CD1A WILD-TYPE" "CD1A WILD-TYPE" "CD1A WILD-TYPE" "CD1A WILD-TYPE" 
D248V12, continuous
[1] "Remove cluster labels:" "CD1A MUTATED"          
clus
  CD1A MUTATED CD1A WILD-TYPE 
             2             80 
    TCGA-05-4384     TCGA-05-4390     TCGA-05-4396     TCGA-05-4403 
"CD1A WILD-TYPE" "CD1A WILD-TYPE" "CD1A WILD-TYPE" "CD1A WILD-TYPE" 
    TCGA-05-4405     TCGA-05-4410     TCGA-05-4415     TCGA-05-4424 
"CD1A WILD-TYPE" "CD1A WILD-TYPE" "CD1A WILD-TYPE" "CD1A WILD-TYPE" 
    TCGA-05-4427     TCGA-05-4433     TCGA-05-5420     TCGA-05-5423 
"CD1A WILD-TYPE" "CD1A WILD-TYPE" "CD1A WILD-TYPE" "CD1A WILD-TYPE" 
    TCGA-05-5425     TCGA-05-5428     TCGA-35-4122     TCGA-35-4123 
"CD1A WILD-TYPE" "CD1A WILD-TYPE" "CD1A WILD-TYPE" "CD1A WILD-TYPE" 
    TCGA-35-5375     TCGA-38-4629     TCGA-38-4632     TCGA-44-2655 
"CD1A WILD-TYPE" "CD1A WILD-TYPE" "CD1A WILD-TYPE" "CD1A WILD-TYPE" 
    TCGA-44-2656     TCGA-44-2657     TCGA-44-2659     TCGA-44-2662 
"CD1A WILD-TYPE" "CD1A WILD-TYPE" "CD1A WILD-TYPE" "CD1A WILD-TYPE" 
    TCGA-44-2668     TCGA-44-3398     TCGA-44-3918     TCGA-44-4112 
"CD1A WILD-TYPE" "CD1A WILD-TYPE" "CD1A WILD-TYPE" "CD1A WILD-TYPE" 
    TCGA-44-5645     TCGA-44-6145     TCGA-44-6146     TCGA-44-6147 
"CD1A WILD-TYPE" "CD1A WILD-TYPE" "CD1A WILD-TYPE" "CD1A WILD-TYPE" 
    TCGA-44-6148     TCGA-44-6775     TCGA-44-6776     TCGA-44-6777 
"CD1A WILD-TYPE" "CD1A WILD-TYPE" "CD1A WILD-TYPE" "CD1A WILD-TYPE" 
    TCGA-44-6778     TCGA-44-6779     TCGA-49-4486     TCGA-49-4488 
"CD1A WILD-TYPE" "CD1A WILD-TYPE" "CD1A WILD-TYPE" "CD1A WILD-TYPE" 
    TCGA-49-4505     TCGA-49-4507     TCGA-50-5051     TCGA-50-5072 
"CD1A WILD-TYPE" "CD1A WILD-TYPE" "CD1A WILD-TYPE" "CD1A WILD-TYPE" 
    TCGA-50-5939     TCGA-50-5942     TCGA-50-5946     TCGA-50-6590 
"CD1A WILD-TYPE" "CD1A WILD-TYPE" "CD1A WILD-TYPE" "CD1A WILD-TYPE" 
    TCGA-50-6594     TCGA-50-6595     TCGA-55-1592     TCGA-55-1595 
"CD1A WILD-TYPE" "CD1A WILD-TYPE" "CD1A WILD-TYPE" "CD1A WILD-TYPE" 
    TCGA-55-6543     TCGA-55-6712     TCGA-64-1678     TCGA-64-1680 
"CD1A WILD-TYPE" "CD1A WILD-TYPE" "CD1A WILD-TYPE" "CD1A WILD-TYPE" 
    TCGA-64-5774     TCGA-64-5778     TCGA-64-5779     TCGA-64-5781 
"CD1A WILD-TYPE" "CD1A WILD-TYPE" "CD1A WILD-TYPE" "CD1A WILD-TYPE" 
    TCGA-64-5815     TCGA-67-6217     TCGA-73-4659     TCGA-73-4662 
"CD1A WILD-TYPE" "CD1A WILD-TYPE" "CD1A WILD-TYPE" "CD1A WILD-TYPE" 
    TCGA-73-4666     TCGA-73-4668     TCGA-73-4670     TCGA-73-4675 
"CD1A WILD-TYPE" "CD1A WILD-TYPE" "CD1A WILD-TYPE" "CD1A WILD-TYPE" 
    TCGA-73-4676     TCGA-73-4677     TCGA-75-5122     TCGA-75-5125 
"CD1A WILD-TYPE" "CD1A WILD-TYPE" "CD1A WILD-TYPE" "CD1A WILD-TYPE" 
    TCGA-75-5126     TCGA-75-5146     TCGA-75-6206     TCGA-75-6207 
"CD1A WILD-TYPE" "CD1A WILD-TYPE" "CD1A WILD-TYPE" "CD1A WILD-TYPE" 
    TCGA-80-5611     TCGA-91-6828     TCGA-91-6829     TCGA-91-6835 
"CD1A WILD-TYPE" "CD1A WILD-TYPE" "CD1A WILD-TYPE" "CD1A WILD-TYPE" 
D248V13, multiclass
                                             clus
vv                                            CD1A MUTATED CD1A WILD-TYPE
  CURRENT REFORMED SMOKER FOR < OR = 15 YEARS            1             61
  CURRENT REFORMED SMOKER FOR > 15 YEARS                 1             45
  CURRENT SMOKER                                         0             28
  LIFELONG NON-SMOKER                                    2             22
D248V14, continuous
[1] "Remove cluster labels:" "CD1A MUTATED"          
clus
  CD1A MUTATED CD1A WILD-TYPE 
             2             66 
    TCGA-05-4384     TCGA-05-4390     TCGA-05-4396     TCGA-05-4405 
"CD1A WILD-TYPE" "CD1A WILD-TYPE" "CD1A WILD-TYPE" "CD1A WILD-TYPE" 
    TCGA-05-4410     TCGA-05-4415     TCGA-05-4424     TCGA-05-4427 
"CD1A WILD-TYPE" "CD1A WILD-TYPE" "CD1A WILD-TYPE" "CD1A WILD-TYPE" 
    TCGA-05-4433     TCGA-05-5420     TCGA-05-5423     TCGA-05-5425 
"CD1A WILD-TYPE" "CD1A WILD-TYPE" "CD1A WILD-TYPE" "CD1A WILD-TYPE" 
    TCGA-05-5428     TCGA-35-4122     TCGA-35-4123     TCGA-35-5375 
"CD1A WILD-TYPE" "CD1A WILD-TYPE" "CD1A WILD-TYPE" "CD1A WILD-TYPE" 
    TCGA-38-4625     TCGA-38-4626     TCGA-44-2655     TCGA-44-2656 
"CD1A WILD-TYPE" "CD1A WILD-TYPE" "CD1A WILD-TYPE" "CD1A WILD-TYPE" 
    TCGA-44-2657     TCGA-44-2659     TCGA-44-2662     TCGA-44-2666 
"CD1A WILD-TYPE" "CD1A WILD-TYPE" "CD1A WILD-TYPE" "CD1A WILD-TYPE" 
    TCGA-44-2668     TCGA-44-3396     TCGA-44-3398     TCGA-44-3918 
"CD1A WILD-TYPE" "CD1A WILD-TYPE" "CD1A WILD-TYPE" "CD1A WILD-TYPE" 
    TCGA-44-4112     TCGA-44-5645     TCGA-44-6144     TCGA-44-6145 
"CD1A WILD-TYPE" "CD1A WILD-TYPE" "CD1A WILD-TYPE" "CD1A WILD-TYPE" 
    TCGA-44-6147     TCGA-44-6148     TCGA-44-6774     TCGA-44-6775 
"CD1A WILD-TYPE" "CD1A WILD-TYPE" "CD1A WILD-TYPE" "CD1A WILD-TYPE" 
    TCGA-44-6776     TCGA-44-6777     TCGA-44-6778     TCGA-44-6779 
"CD1A WILD-TYPE" "CD1A WILD-TYPE" "CD1A WILD-TYPE" "CD1A WILD-TYPE" 
    TCGA-49-4486     TCGA-49-4505     TCGA-55-1592     TCGA-55-1594 
"CD1A WILD-TYPE" "CD1A WILD-TYPE" "CD1A WILD-TYPE" "CD1A WILD-TYPE" 
    TCGA-55-1595     TCGA-55-1596     TCGA-55-5899     TCGA-55-6642 
"CD1A WILD-TYPE" "CD1A WILD-TYPE" "CD1A WILD-TYPE" "CD1A WILD-TYPE" 
    TCGA-55-6712     TCGA-64-1677     TCGA-64-1678     TCGA-64-1680 
"CD1A WILD-TYPE" "CD1A WILD-TYPE" "CD1A WILD-TYPE" "CD1A WILD-TYPE" 
    TCGA-64-5774     TCGA-64-5775     TCGA-64-5778     TCGA-64-5779 
"CD1A WILD-TYPE" "CD1A WILD-TYPE" "CD1A WILD-TYPE" "CD1A WILD-TYPE" 
    TCGA-64-5781     TCGA-73-4659     TCGA-73-4662     TCGA-73-4666 
"CD1A WILD-TYPE" "CD1A WILD-TYPE" "CD1A WILD-TYPE" "CD1A WILD-TYPE" 
    TCGA-73-4668     TCGA-73-4670     TCGA-73-4675     TCGA-73-4676 
"CD1A WILD-TYPE" "CD1A WILD-TYPE" "CD1A WILD-TYPE" "CD1A WILD-TYPE" 
    TCGA-91-6829     TCGA-91-6836 
"CD1A WILD-TYPE" "CD1A WILD-TYPE" 

Clustering(249) Variable = FGB MUTATION ANALYSIS
D249V1, survival
               sevent
clus2            0  1
  FGB MUTATED    7  3
  FGB WILD-TYPE 92 47
  FGB MUTATED FGB WILD-TYPE 
           10           139 
  FGB MUTATED FGB WILD-TYPE 
            3            47 
$`FGB MUTATED`
TCGA-05-4396 TCGA-05-4424 TCGA-38-4626 TCGA-44-2656 TCGA-44-6778 TCGA-49-4506 
        9.96        30.02        85.32        19.10        36.49        32.84 
TCGA-50-5044 TCGA-50-5941 TCGA-50-5942 TCGA-64-1676 
       20.48         9.37         4.44        56.81 

$`FGB WILD-TYPE`
TCGA-05-4249 TCGA-05-4250 TCGA-05-4382 TCGA-05-4384 TCGA-05-4390 TCGA-05-4397 
       38.07         3.98        19.92        14.01        37.02        24.03 
TCGA-05-4398 TCGA-05-4402 TCGA-05-4405 TCGA-05-4415 TCGA-05-4417 TCGA-05-4418 
       47.05         8.02        20.05         2.96        14.93         8.98 
TCGA-05-4420 TCGA-05-4426 TCGA-05-4427 TCGA-05-4430 TCGA-05-4432 TCGA-05-4433 
       29.95        26.01        26.01        25.02        25.02        24.00 
TCGA-05-4434 TCGA-05-5420 TCGA-05-5423 TCGA-05-5425 TCGA-05-5429 TCGA-05-5715 
       15.02         1.02         4.96         2.96         0.99         2.04 
TCGA-35-3615 TCGA-35-4122 TCGA-35-4123 TCGA-35-5375 TCGA-38-4625 TCGA-38-4627 
        0.46         7.36         5.95         8.68        47.61        37.71 
TCGA-38-4628 TCGA-38-4629 TCGA-38-4630 TCGA-38-4631 TCGA-38-4632 TCGA-38-6178 
       49.02        28.37        35.28        11.64        44.61         5.19 
TCGA-44-2655 TCGA-44-2657 TCGA-44-2659 TCGA-44-2661 TCGA-44-2662 TCGA-44-2665 
       18.87        13.15        17.39         3.39        15.78        13.15 
TCGA-44-2666 TCGA-44-2668 TCGA-44-3396 TCGA-44-3398 TCGA-44-3918 TCGA-44-3919 
        3.19         8.09        10.22         8.32         6.44         6.21 
TCGA-44-4112 TCGA-44-5643 TCGA-44-5645 TCGA-44-6144 TCGA-44-6145 TCGA-44-6146 
        4.60         3.48         6.84         0.30         3.35         9.93 
TCGA-44-6147 TCGA-44-6148 TCGA-44-6774 TCGA-44-6775 TCGA-44-6776 TCGA-44-6777 
        7.76         3.12         5.42         2.70        63.72        32.45 
TCGA-44-6779 TCGA-49-4486 TCGA-49-4487 TCGA-49-4488 TCGA-49-4490 TCGA-49-4494 
       16.41        76.21        28.11        28.57        12.66        35.54 
TCGA-49-4501 TCGA-49-4505 TCGA-49-4507 TCGA-49-4510 TCGA-49-4512 TCGA-49-4514 
       46.72        14.07         8.81        29.46        29.75        43.20 
TCGA-49-6742 TCGA-49-6743 TCGA-49-6744 TCGA-49-6745 TCGA-50-5045 TCGA-50-5049 
       15.02        12.13        12.99         4.93        71.47        48.82 
TCGA-50-5051 TCGA-50-5055 TCGA-50-5066 TCGA-50-5068 TCGA-50-5072 TCGA-50-5930 
       14.96        25.81         9.76        49.28         8.05         9.27 
TCGA-50-5931 TCGA-50-5932 TCGA-50-5933 TCGA-50-5935 TCGA-50-5936 TCGA-50-5939 
        8.78        35.87        77.88        21.47         8.45        15.12 
TCGA-50-5944 TCGA-50-5946 TCGA-50-6590 TCGA-50-6591 TCGA-50-6592 TCGA-50-6593 
       12.26        11.47        42.31         3.88        25.51        11.05 
TCGA-50-6594 TCGA-50-6595 TCGA-50-6597 TCGA-55-1592 TCGA-55-1594 TCGA-55-1595 
       12.16         6.21        33.37        23.05        38.73        48.62 
TCGA-55-1596 TCGA-55-5899 TCGA-55-6543 TCGA-55-6642 TCGA-55-6712 TCGA-64-1677 
       45.17         2.86         0.07        32.61         0.79        20.65 
TCGA-64-1678 TCGA-64-1680 TCGA-64-5774 TCGA-64-5775 TCGA-64-5778 TCGA-64-5779 
       39.09        37.02        83.84         0.10        30.44        16.67 
TCGA-64-5781 TCGA-64-5815 TCGA-67-3770 TCGA-67-3771 TCGA-67-3772 TCGA-67-3773 
       39.52         7.33         0.99         1.97         0.59         2.04 
TCGA-67-3774 TCGA-67-6215 TCGA-67-6216 TCGA-67-6217 TCGA-71-6725 TCGA-73-4658 
        0.59         0.89         0.69        13.87         2.01        52.57 
TCGA-73-4659 TCGA-73-4662 TCGA-73-4666 TCGA-73-4668 TCGA-73-4670 TCGA-73-4675 
       23.38        29.95        20.28        15.35         0.46         1.32 
TCGA-73-4676 TCGA-73-4677 TCGA-91-6828 TCGA-91-6829 TCGA-91-6831 TCGA-91-6835 
        4.01         1.25         1.22        41.33         1.28         1.15 
TCGA-91-6836 
        0.36 

  FGB MUTATED FGB WILD-TYPE 
         4.44          0.07 
  FGB MUTATED FGB WILD-TYPE 
        85.32         83.84 
  FGB MUTATED FGB WILD-TYPE 
        25.25         13.15 
[1] "4.4 - 85.3 (25.2)" "0.1 - 83.8 (13.2)"
   TCGA-05-4249    TCGA-05-4250    TCGA-05-4382    TCGA-05-4384    TCGA-05-4390 
"FGB WILD-TYPE" "FGB WILD-TYPE" "FGB WILD-TYPE" "FGB WILD-TYPE" "FGB WILD-TYPE" 
   TCGA-05-4396    TCGA-05-4397    TCGA-05-4398    TCGA-05-4402    TCGA-05-4405 
  "FGB MUTATED" "FGB WILD-TYPE" "FGB WILD-TYPE" "FGB WILD-TYPE" "FGB WILD-TYPE" 
   TCGA-05-4415    TCGA-05-4417    TCGA-05-4418    TCGA-05-4420    TCGA-05-4424 
"FGB WILD-TYPE" "FGB WILD-TYPE" "FGB WILD-TYPE" "FGB WILD-TYPE"   "FGB MUTATED" 
   TCGA-05-4426    TCGA-05-4427    TCGA-05-4430    TCGA-05-4432    TCGA-05-4433 
"FGB WILD-TYPE" "FGB WILD-TYPE" "FGB WILD-TYPE" "FGB WILD-TYPE" "FGB WILD-TYPE" 
   TCGA-05-4434    TCGA-05-5420    TCGA-05-5423    TCGA-05-5425    TCGA-05-5429 
"FGB WILD-TYPE" "FGB WILD-TYPE" "FGB WILD-TYPE" "FGB WILD-TYPE" "FGB WILD-TYPE" 
   TCGA-05-5715    TCGA-35-3615    TCGA-35-4122    TCGA-35-4123    TCGA-35-5375 
"FGB WILD-TYPE" "FGB WILD-TYPE" "FGB WILD-TYPE" "FGB WILD-TYPE" "FGB WILD-TYPE" 
   TCGA-38-4625    TCGA-38-4626    TCGA-38-4627    TCGA-38-4628    TCGA-38-4629 
"FGB WILD-TYPE"   "FGB MUTATED" "FGB WILD-TYPE" "FGB WILD-TYPE" "FGB WILD-TYPE" 
   TCGA-38-4630    TCGA-38-4631    TCGA-38-4632    TCGA-38-6178    TCGA-44-2655 
"FGB WILD-TYPE" "FGB WILD-TYPE" "FGB WILD-TYPE" "FGB WILD-TYPE" "FGB WILD-TYPE" 
   TCGA-44-2656    TCGA-44-2657    TCGA-44-2659    TCGA-44-2661    TCGA-44-2662 
  "FGB MUTATED" "FGB WILD-TYPE" "FGB WILD-TYPE" "FGB WILD-TYPE" "FGB WILD-TYPE" 
   TCGA-44-2665    TCGA-44-2666    TCGA-44-2668    TCGA-44-3396    TCGA-44-3398 
"FGB WILD-TYPE" "FGB WILD-TYPE" "FGB WILD-TYPE" "FGB WILD-TYPE" "FGB WILD-TYPE" 
   TCGA-44-3918    TCGA-44-3919    TCGA-44-4112    TCGA-44-5643    TCGA-44-5645 
"FGB WILD-TYPE" "FGB WILD-TYPE" "FGB WILD-TYPE" "FGB WILD-TYPE" "FGB WILD-TYPE" 
   TCGA-44-6144    TCGA-44-6145    TCGA-44-6146    TCGA-44-6147    TCGA-44-6148 
"FGB WILD-TYPE" "FGB WILD-TYPE" "FGB WILD-TYPE" "FGB WILD-TYPE" "FGB WILD-TYPE" 
   TCGA-44-6774    TCGA-44-6775    TCGA-44-6776    TCGA-44-6777    TCGA-44-6778 
"FGB WILD-TYPE" "FGB WILD-TYPE" "FGB WILD-TYPE" "FGB WILD-TYPE"   "FGB MUTATED" 
   TCGA-44-6779    TCGA-49-4486    TCGA-49-4487    TCGA-49-4488    TCGA-49-4490 
"FGB WILD-TYPE" "FGB WILD-TYPE" "FGB WILD-TYPE" "FGB WILD-TYPE" "FGB WILD-TYPE" 
   TCGA-49-4494    TCGA-49-4501    TCGA-49-4505    TCGA-49-4506    TCGA-49-4507 
"FGB WILD-TYPE" "FGB WILD-TYPE" "FGB WILD-TYPE"   "FGB MUTATED" "FGB WILD-TYPE" 
   TCGA-49-4510    TCGA-49-4512    TCGA-49-4514    TCGA-49-6742    TCGA-49-6743 
"FGB WILD-TYPE" "FGB WILD-TYPE" "FGB WILD-TYPE" "FGB WILD-TYPE" "FGB WILD-TYPE" 
   TCGA-49-6744    TCGA-49-6745    TCGA-50-5044    TCGA-50-5045    TCGA-50-5049 
"FGB WILD-TYPE" "FGB WILD-TYPE"   "FGB MUTATED" "FGB WILD-TYPE" "FGB WILD-TYPE" 
   TCGA-50-5051    TCGA-50-5055    TCGA-50-5066    TCGA-50-5068    TCGA-50-5072 
"FGB WILD-TYPE" "FGB WILD-TYPE" "FGB WILD-TYPE" "FGB WILD-TYPE" "FGB WILD-TYPE" 
   TCGA-50-5930    TCGA-50-5931    TCGA-50-5932    TCGA-50-5933    TCGA-50-5935 
"FGB WILD-TYPE" "FGB WILD-TYPE" "FGB WILD-TYPE" "FGB WILD-TYPE" "FGB WILD-TYPE" 
   TCGA-50-5936    TCGA-50-5939    TCGA-50-5941    TCGA-50-5942    TCGA-50-5944 
"FGB WILD-TYPE" "FGB WILD-TYPE"   "FGB MUTATED"   "FGB MUTATED" "FGB WILD-TYPE" 
   TCGA-50-5946    TCGA-50-6590    TCGA-50-6591    TCGA-50-6592    TCGA-50-6593 
"FGB WILD-TYPE" "FGB WILD-TYPE" "FGB WILD-TYPE" "FGB WILD-TYPE" "FGB WILD-TYPE" 
   TCGA-50-6594    TCGA-50-6595    TCGA-50-6597    TCGA-55-1592    TCGA-55-1594 
"FGB WILD-TYPE" "FGB WILD-TYPE" "FGB WILD-TYPE" "FGB WILD-TYPE" "FGB WILD-TYPE" 
   TCGA-55-1595    TCGA-55-1596    TCGA-55-5899    TCGA-55-6543    TCGA-55-6642 
"FGB WILD-TYPE" "FGB WILD-TYPE" "FGB WILD-TYPE" "FGB WILD-TYPE" "FGB WILD-TYPE" 
   TCGA-55-6712    TCGA-64-1676    TCGA-64-1677    TCGA-64-1678    TCGA-64-1680 
"FGB WILD-TYPE"   "FGB MUTATED" "FGB WILD-TYPE" "FGB WILD-TYPE" "FGB WILD-TYPE" 
   TCGA-64-5774    TCGA-64-5775    TCGA-64-5778    TCGA-64-5779    TCGA-64-5781 
"FGB WILD-TYPE" "FGB WILD-TYPE" "FGB WILD-TYPE" "FGB WILD-TYPE" "FGB WILD-TYPE" 
   TCGA-64-5815    TCGA-67-3770    TCGA-67-3771    TCGA-67-3772    TCGA-67-3773 
"FGB WILD-TYPE" "FGB WILD-TYPE" "FGB WILD-TYPE" "FGB WILD-TYPE" "FGB WILD-TYPE" 
   TCGA-67-3774    TCGA-67-6215    TCGA-67-6216    TCGA-67-6217    TCGA-71-6725 
"FGB WILD-TYPE" "FGB WILD-TYPE" "FGB WILD-TYPE" "FGB WILD-TYPE" "FGB WILD-TYPE" 
   TCGA-73-4658    TCGA-73-4659    TCGA-73-4662    TCGA-73-4666    TCGA-73-4668 
"FGB WILD-TYPE" "FGB WILD-TYPE" "FGB WILD-TYPE" "FGB WILD-TYPE" "FGB WILD-TYPE" 
   TCGA-73-4670    TCGA-73-4675    TCGA-73-4676    TCGA-73-4677    TCGA-91-6828 
"FGB WILD-TYPE" "FGB WILD-TYPE" "FGB WILD-TYPE" "FGB WILD-TYPE" "FGB WILD-TYPE" 
   TCGA-91-6829    TCGA-91-6831    TCGA-91-6835    TCGA-91-6836 
"FGB WILD-TYPE" "FGB WILD-TYPE" "FGB WILD-TYPE" "FGB WILD-TYPE" 
   TCGA-05-4249    TCGA-05-4250    TCGA-05-4382    TCGA-05-4384    TCGA-05-4390 
"FGB WILD-TYPE" "FGB WILD-TYPE" "FGB WILD-TYPE" "FGB WILD-TYPE" "FGB WILD-TYPE" 
   TCGA-05-4396    TCGA-05-4397    TCGA-05-4398    TCGA-05-4402    TCGA-05-4405 
  "FGB MUTATED" "FGB WILD-TYPE" "FGB WILD-TYPE" "FGB WILD-TYPE" "FGB WILD-TYPE" 
   TCGA-05-4415    TCGA-05-4417    TCGA-05-4418    TCGA-05-4420    TCGA-05-4424 
"FGB WILD-TYPE" "FGB WILD-TYPE" "FGB WILD-TYPE" "FGB WILD-TYPE"   "FGB MUTATED" 
   TCGA-05-4426    TCGA-05-4427    TCGA-05-4430    TCGA-05-4432    TCGA-05-4433 
"FGB WILD-TYPE" "FGB WILD-TYPE" "FGB WILD-TYPE" "FGB WILD-TYPE" "FGB WILD-TYPE" 
   TCGA-05-4434    TCGA-05-5420    TCGA-05-5423    TCGA-05-5425    TCGA-05-5429 
"FGB WILD-TYPE" "FGB WILD-TYPE" "FGB WILD-TYPE" "FGB WILD-TYPE" "FGB WILD-TYPE" 
   TCGA-05-5715    TCGA-35-3615    TCGA-35-4122    TCGA-35-4123    TCGA-35-5375 
"FGB WILD-TYPE" "FGB WILD-TYPE" "FGB WILD-TYPE" "FGB WILD-TYPE" "FGB WILD-TYPE" 
   TCGA-38-4625    TCGA-38-4626    TCGA-38-4627    TCGA-38-4628    TCGA-38-4629 
"FGB WILD-TYPE"   "FGB MUTATED" "FGB WILD-TYPE" "FGB WILD-TYPE" "FGB WILD-TYPE" 
   TCGA-38-4630    TCGA-38-4631    TCGA-38-4632    TCGA-38-6178    TCGA-44-2655 
"FGB WILD-TYPE" "FGB WILD-TYPE" "FGB WILD-TYPE" "FGB WILD-TYPE" "FGB WILD-TYPE" 
   TCGA-44-2656    TCGA-44-2657    TCGA-44-2659    TCGA-44-2661    TCGA-44-2662 
  "FGB MUTATED" "FGB WILD-TYPE" "FGB WILD-TYPE" "FGB WILD-TYPE" "FGB WILD-TYPE" 
   TCGA-44-2665    TCGA-44-2666    TCGA-44-2668    TCGA-44-3396    TCGA-44-3398 
"FGB WILD-TYPE" "FGB WILD-TYPE" "FGB WILD-TYPE" "FGB WILD-TYPE" "FGB WILD-TYPE" 
   TCGA-44-3918    TCGA-44-3919    TCGA-44-4112    TCGA-44-5643    TCGA-44-5645 
"FGB WILD-TYPE" "FGB WILD-TYPE" "FGB WILD-TYPE" "FGB WILD-TYPE" "FGB WILD-TYPE" 
   TCGA-44-6144    TCGA-44-6145    TCGA-44-6146    TCGA-44-6147    TCGA-44-6148 
"FGB WILD-TYPE" "FGB WILD-TYPE" "FGB WILD-TYPE" "FGB WILD-TYPE" "FGB WILD-TYPE" 
   TCGA-44-6774    TCGA-44-6775    TCGA-44-6776    TCGA-44-6777    TCGA-44-6778 
"FGB WILD-TYPE" "FGB WILD-TYPE" "FGB WILD-TYPE" "FGB WILD-TYPE"   "FGB MUTATED" 
   TCGA-44-6779    TCGA-49-4486    TCGA-49-4487    TCGA-49-4488    TCGA-49-4490 
"FGB WILD-TYPE" "FGB WILD-TYPE" "FGB WILD-TYPE" "FGB WILD-TYPE" "FGB WILD-TYPE" 
   TCGA-49-4494    TCGA-49-4501    TCGA-49-4505    TCGA-49-4506    TCGA-49-4507 
"FGB WILD-TYPE" "FGB WILD-TYPE" "FGB WILD-TYPE"   "FGB MUTATED" "FGB WILD-TYPE" 
   TCGA-49-4510    TCGA-49-4512    TCGA-49-4514    TCGA-49-6742    TCGA-49-6743 
"FGB WILD-TYPE" "FGB WILD-TYPE" "FGB WILD-TYPE" "FGB WILD-TYPE" "FGB WILD-TYPE" 
   TCGA-49-6744    TCGA-49-6745    TCGA-50-5044    TCGA-50-5045    TCGA-50-5049 
"FGB WILD-TYPE" "FGB WILD-TYPE"   "FGB MUTATED" "FGB WILD-TYPE" "FGB WILD-TYPE" 
   TCGA-50-5051    TCGA-50-5055    TCGA-50-5066    TCGA-50-5068    TCGA-50-5072 
"FGB WILD-TYPE" "FGB WILD-TYPE" "FGB WILD-TYPE" "FGB WILD-TYPE" "FGB WILD-TYPE" 
   TCGA-50-5930    TCGA-50-5931    TCGA-50-5932    TCGA-50-5933    TCGA-50-5935 
"FGB WILD-TYPE" "FGB WILD-TYPE" "FGB WILD-TYPE" "FGB WILD-TYPE" "FGB WILD-TYPE" 
   TCGA-50-5936    TCGA-50-5939    TCGA-50-5941    TCGA-50-5942    TCGA-50-5944 
"FGB WILD-TYPE" "FGB WILD-TYPE"   "FGB MUTATED"   "FGB MUTATED" "FGB WILD-TYPE" 
   TCGA-50-5946    TCGA-50-6590    TCGA-50-6591    TCGA-50-6592    TCGA-50-6593 
"FGB WILD-TYPE" "FGB WILD-TYPE" "FGB WILD-TYPE" "FGB WILD-TYPE" "FGB WILD-TYPE" 
   TCGA-50-6594    TCGA-50-6595    TCGA-50-6597    TCGA-55-1592    TCGA-55-1594 
"FGB WILD-TYPE" "FGB WILD-TYPE" "FGB WILD-TYPE" "FGB WILD-TYPE" "FGB WILD-TYPE" 
   TCGA-55-1595    TCGA-55-1596    TCGA-55-5899    TCGA-55-6543    TCGA-55-6642 
"FGB WILD-TYPE" "FGB WILD-TYPE" "FGB WILD-TYPE" "FGB WILD-TYPE" "FGB WILD-TYPE" 
   TCGA-55-6712    TCGA-64-1676    TCGA-64-1677    TCGA-64-1678    TCGA-64-1680 
"FGB WILD-TYPE"   "FGB MUTATED" "FGB WILD-TYPE" "FGB WILD-TYPE" "FGB WILD-TYPE" 
   TCGA-64-5774    TCGA-64-5775    TCGA-64-5778    TCGA-64-5779    TCGA-64-5781 
"FGB WILD-TYPE" "FGB WILD-TYPE" "FGB WILD-TYPE" "FGB WILD-TYPE" "FGB WILD-TYPE" 
   TCGA-64-5815    TCGA-67-3770    TCGA-67-3771    TCGA-67-3772    TCGA-67-3773 
"FGB WILD-TYPE" "FGB WILD-TYPE" "FGB WILD-TYPE" "FGB WILD-TYPE" "FGB WILD-TYPE" 
   TCGA-67-3774    TCGA-67-6215    TCGA-67-6216    TCGA-67-6217    TCGA-71-6725 
"FGB WILD-TYPE" "FGB WILD-TYPE" "FGB WILD-TYPE" "FGB WILD-TYPE" "FGB WILD-TYPE" 
   TCGA-73-4658    TCGA-73-4659    TCGA-73-4662    TCGA-73-4666    TCGA-73-4668 
"FGB WILD-TYPE" "FGB WILD-TYPE" "FGB WILD-TYPE" "FGB WILD-TYPE" "FGB WILD-TYPE" 
   TCGA-73-4670    TCGA-73-4675    TCGA-73-4676    TCGA-73-4677    TCGA-91-6828 
"FGB WILD-TYPE" "FGB WILD-TYPE" "FGB WILD-TYPE" "FGB WILD-TYPE" "FGB WILD-TYPE" 
   TCGA-91-6829    TCGA-91-6831    TCGA-91-6835    TCGA-91-6836 
"FGB WILD-TYPE" "FGB WILD-TYPE" "FGB WILD-TYPE" "FGB WILD-TYPE" 
   TCGA-05-4249    TCGA-05-4250    TCGA-05-4382    TCGA-05-4384    TCGA-05-4390 
"FGB WILD-TYPE" "FGB WILD-TYPE" "FGB WILD-TYPE" "FGB WILD-TYPE" "FGB WILD-TYPE" 
   TCGA-05-4396    TCGA-05-4397    TCGA-05-4398    TCGA-05-4402    TCGA-05-4405 
  "FGB MUTATED" "FGB WILD-TYPE" "FGB WILD-TYPE" "FGB WILD-TYPE" "FGB WILD-TYPE" 
   TCGA-05-4415    TCGA-05-4417    TCGA-05-4418    TCGA-05-4420    TCGA-05-4424 
"FGB WILD-TYPE" "FGB WILD-TYPE" "FGB WILD-TYPE" "FGB WILD-TYPE"   "FGB MUTATED" 
   TCGA-05-4426    TCGA-05-4427    TCGA-05-4430    TCGA-05-4432    TCGA-05-4433 
"FGB WILD-TYPE" "FGB WILD-TYPE" "FGB WILD-TYPE" "FGB WILD-TYPE" "FGB WILD-TYPE" 
   TCGA-05-4434    TCGA-05-5420    TCGA-05-5423    TCGA-05-5425    TCGA-05-5429 
"FGB WILD-TYPE" "FGB WILD-TYPE" "FGB WILD-TYPE" "FGB WILD-TYPE" "FGB WILD-TYPE" 
   TCGA-05-5715    TCGA-35-3615    TCGA-35-4122    TCGA-35-4123    TCGA-35-5375 
"FGB WILD-TYPE" "FGB WILD-TYPE" "FGB WILD-TYPE" "FGB WILD-TYPE" "FGB WILD-TYPE" 
   TCGA-38-4625    TCGA-38-4626    TCGA-38-4627    TCGA-38-4628    TCGA-38-4629 
"FGB WILD-TYPE"   "FGB MUTATED" "FGB WILD-TYPE" "FGB WILD-TYPE" "FGB WILD-TYPE" 
   TCGA-38-4630    TCGA-38-4631    TCGA-38-4632    TCGA-38-6178    TCGA-44-2655 
"FGB WILD-TYPE" "FGB WILD-TYPE" "FGB WILD-TYPE" "FGB WILD-TYPE" "FGB WILD-TYPE" 
   TCGA-44-2656    TCGA-44-2657    TCGA-44-2659    TCGA-44-2661    TCGA-44-2662 
  "FGB MUTATED" "FGB WILD-TYPE" "FGB WILD-TYPE" "FGB WILD-TYPE" "FGB WILD-TYPE" 
   TCGA-44-2665    TCGA-44-2666    TCGA-44-2668    TCGA-44-3396    TCGA-44-3398 
"FGB WILD-TYPE" "FGB WILD-TYPE" "FGB WILD-TYPE" "FGB WILD-TYPE" "FGB WILD-TYPE" 
   TCGA-44-3918    TCGA-44-3919    TCGA-44-4112    TCGA-44-5643    TCGA-44-5645 
"FGB WILD-TYPE" "FGB WILD-TYPE" "FGB WILD-TYPE" "FGB WILD-TYPE" "FGB WILD-TYPE" 
   TCGA-44-6144    TCGA-44-6145    TCGA-44-6146    TCGA-44-6147    TCGA-44-6148 
"FGB WILD-TYPE" "FGB WILD-TYPE" "FGB WILD-TYPE" "FGB WILD-TYPE" "FGB WILD-TYPE" 
   TCGA-44-6774    TCGA-44-6775    TCGA-44-6776    TCGA-44-6777    TCGA-44-6778 
"FGB WILD-TYPE" "FGB WILD-TYPE" "FGB WILD-TYPE" "FGB WILD-TYPE"   "FGB MUTATED" 
   TCGA-44-6779    TCGA-49-4486    TCGA-49-4487    TCGA-49-4488    TCGA-49-4490 
"FGB WILD-TYPE" "FGB WILD-TYPE" "FGB WILD-TYPE" "FGB WILD-TYPE" "FGB WILD-TYPE" 
   TCGA-49-4494    TCGA-49-4501    TCGA-49-4505    TCGA-49-4506    TCGA-49-4507 
"FGB WILD-TYPE" "FGB WILD-TYPE" "FGB WILD-TYPE"   "FGB MUTATED" "FGB WILD-TYPE" 
   TCGA-49-4510    TCGA-49-4512    TCGA-49-4514    TCGA-49-6742    TCGA-49-6743 
"FGB WILD-TYPE" "FGB WILD-TYPE" "FGB WILD-TYPE" "FGB WILD-TYPE" "FGB WILD-TYPE" 
   TCGA-49-6744    TCGA-49-6745    TCGA-50-5044    TCGA-50-5045    TCGA-50-5049 
"FGB WILD-TYPE" "FGB WILD-TYPE"   "FGB MUTATED" "FGB WILD-TYPE" "FGB WILD-TYPE" 
   TCGA-50-5051    TCGA-50-5055    TCGA-50-5066    TCGA-50-5068    TCGA-50-5072 
"FGB WILD-TYPE" "FGB WILD-TYPE" "FGB WILD-TYPE" "FGB WILD-TYPE" "FGB WILD-TYPE" 
   TCGA-50-5930    TCGA-50-5931    TCGA-50-5932    TCGA-50-5933    TCGA-50-5935 
"FGB WILD-TYPE" "FGB WILD-TYPE" "FGB WILD-TYPE" "FGB WILD-TYPE" "FGB WILD-TYPE" 
   TCGA-50-5936    TCGA-50-5939    TCGA-50-5941    TCGA-50-5942    TCGA-50-5944 
"FGB WILD-TYPE" "FGB WILD-TYPE"   "FGB MUTATED"   "FGB MUTATED" "FGB WILD-TYPE" 
   TCGA-50-5946    TCGA-50-6590    TCGA-50-6591    TCGA-50-6592    TCGA-50-6593 
"FGB WILD-TYPE" "FGB WILD-TYPE" "FGB WILD-TYPE" "FGB WILD-TYPE" "FGB WILD-TYPE" 
   TCGA-50-6594    TCGA-50-6595    TCGA-50-6597    TCGA-55-1592    TCGA-55-1594 
"FGB WILD-TYPE" "FGB WILD-TYPE" "FGB WILD-TYPE" "FGB WILD-TYPE" "FGB WILD-TYPE" 
   TCGA-55-1595    TCGA-55-1596    TCGA-55-5899    TCGA-55-6543    TCGA-55-6642 
"FGB WILD-TYPE" "FGB WILD-TYPE" "FGB WILD-TYPE" "FGB WILD-TYPE" "FGB WILD-TYPE" 
   TCGA-55-6712    TCGA-64-1676    TCGA-64-1677    TCGA-64-1678    TCGA-64-1680 
"FGB WILD-TYPE"   "FGB MUTATED" "FGB WILD-TYPE" "FGB WILD-TYPE" "FGB WILD-TYPE" 
   TCGA-64-5774    TCGA-64-5775    TCGA-64-5778    TCGA-64-5779    TCGA-64-5781 
"FGB WILD-TYPE" "FGB WILD-TYPE" "FGB WILD-TYPE" "FGB WILD-TYPE" "FGB WILD-TYPE" 
   TCGA-64-5815    TCGA-67-3770    TCGA-67-3771    TCGA-67-3772    TCGA-67-3773 
"FGB WILD-TYPE" "FGB WILD-TYPE" "FGB WILD-TYPE" "FGB WILD-TYPE" "FGB WILD-TYPE" 
   TCGA-67-3774    TCGA-67-6215    TCGA-67-6216    TCGA-67-6217    TCGA-71-6725 
"FGB WILD-TYPE" "FGB WILD-TYPE" "FGB WILD-TYPE" "FGB WILD-TYPE" "FGB WILD-TYPE" 
   TCGA-73-4658    TCGA-73-4659    TCGA-73-4662    TCGA-73-4666    TCGA-73-4668 
"FGB WILD-TYPE" "FGB WILD-TYPE" "FGB WILD-TYPE" "FGB WILD-TYPE" "FGB WILD-TYPE" 
   TCGA-73-4670    TCGA-73-4675    TCGA-73-4676    TCGA-73-4677    TCGA-91-6828 
"FGB WILD-TYPE" "FGB WILD-TYPE" "FGB WILD-TYPE" "FGB WILD-TYPE" "FGB WILD-TYPE" 
   TCGA-91-6829    TCGA-91-6831    TCGA-91-6835    TCGA-91-6836 
"FGB WILD-TYPE" "FGB WILD-TYPE" "FGB WILD-TYPE" "FGB WILD-TYPE" 
[1] "hr=" "2.1"
D249V2, continuous
D249V3, binary
[1] "tbl2"
               cls
clus            [,1] [,2]
  FGB MUTATED      6    5
  FGB WILD-TYPE   87   74
        clus
vv       FGB MUTATED FGB WILD-TYPE
  FEMALE           6            87
  MALE             5            74
D249V4, continuous
D249V5, multiclass
D249V6, multiclass
    clus
vv   FGB MUTATED FGB WILD-TYPE
  T1           3            38
  T2           4           104
  T3           2            12
  T4           2             6
D249V7, multiclass
       clus
vv      FGB MUTATED FGB WILD-TYPE
  N0              6            89
  N1              3            34
  N2+N3           2            33
D249V8, multiclass
    clus
vv   FGB MUTATED FGB WILD-TYPE
  M0          10           127
  M1           0             9
  MX           1            21
D249V9, multiclass
     clus
vv    FGB MUTATED FGB WILD-TYPE
  I             3            85
  II            3            30
  III           4            35
  IV            0             9
D249V10, binary
[1] "tbl2"
               cls
clus            [,1] [,2]
  FGB MUTATED      1   10
  FGB WILD-TYPE   15  146
     clus
vv    FGB MUTATED FGB WILD-TYPE
  NO            1            15
  YES          10           146
D249V11, continuous
D249V12, continuous
D249V13, multiclass
                                             clus
vv                                            FGB MUTATED FGB WILD-TYPE
  CURRENT REFORMED SMOKER FOR < OR = 15 YEARS           5            57
  CURRENT REFORMED SMOKER FOR > 15 YEARS                1            45
  CURRENT SMOKER                                        4            24
  LIFELONG NON-SMOKER                                   0            24
D249V14, continuous

Clustering(250) Variable = WDR16 MUTATION ANALYSIS
D250V1, survival
                 sevent
clus2              0  1
  WDR16 MUTATED    4  3
  WDR16 WILD-TYPE 95 47
  WDR16 MUTATED WDR16 WILD-TYPE 
              7             142 
  WDR16 MUTATED WDR16 WILD-TYPE 
              3              47 
$`WDR16 MUTATED`
TCGA-05-4405 TCGA-05-4424 TCGA-05-4432 TCGA-50-6590 TCGA-55-1592 TCGA-64-1678 
       20.05        30.02        25.02        42.31        23.05        39.09 
TCGA-73-4658 
       52.57 

$`WDR16 WILD-TYPE`
TCGA-05-4249 TCGA-05-4250 TCGA-05-4382 TCGA-05-4384 TCGA-05-4390 TCGA-05-4396 
       38.07         3.98        19.92        14.01        37.02         9.96 
TCGA-05-4397 TCGA-05-4398 TCGA-05-4402 TCGA-05-4415 TCGA-05-4417 TCGA-05-4418 
       24.03        47.05         8.02         2.96        14.93         8.98 
TCGA-05-4420 TCGA-05-4426 TCGA-05-4427 TCGA-05-4430 TCGA-05-4433 TCGA-05-4434 
       29.95        26.01        26.01        25.02        24.00        15.02 
TCGA-05-5420 TCGA-05-5423 TCGA-05-5425 TCGA-05-5429 TCGA-05-5715 TCGA-35-3615 
        1.02         4.96         2.96         0.99         2.04         0.46 
TCGA-35-4122 TCGA-35-4123 TCGA-35-5375 TCGA-38-4625 TCGA-38-4626 TCGA-38-4627 
        7.36         5.95         8.68        47.61        85.32        37.71 
TCGA-38-4628 TCGA-38-4629 TCGA-38-4630 TCGA-38-4631 TCGA-38-4632 TCGA-38-6178 
       49.02        28.37        35.28        11.64        44.61         5.19 
TCGA-44-2655 TCGA-44-2656 TCGA-44-2657 TCGA-44-2659 TCGA-44-2661 TCGA-44-2662 
       18.87        19.10        13.15        17.39         3.39        15.78 
TCGA-44-2665 TCGA-44-2666 TCGA-44-2668 TCGA-44-3396 TCGA-44-3398 TCGA-44-3918 
       13.15         3.19         8.09        10.22         8.32         6.44 
TCGA-44-3919 TCGA-44-4112 TCGA-44-5643 TCGA-44-5645 TCGA-44-6144 TCGA-44-6145 
        6.21         4.60         3.48         6.84         0.30         3.35 
TCGA-44-6146 TCGA-44-6147 TCGA-44-6148 TCGA-44-6774 TCGA-44-6775 TCGA-44-6776 
        9.93         7.76         3.12         5.42         2.70        63.72 
TCGA-44-6777 TCGA-44-6778 TCGA-44-6779 TCGA-49-4486 TCGA-49-4487 TCGA-49-4488 
       32.45        36.49        16.41        76.21        28.11        28.57 
TCGA-49-4490 TCGA-49-4494 TCGA-49-4501 TCGA-49-4505 TCGA-49-4506 TCGA-49-4507 
       12.66        35.54        46.72        14.07        32.84         8.81 
TCGA-49-4510 TCGA-49-4512 TCGA-49-4514 TCGA-49-6742 TCGA-49-6743 TCGA-49-6744 
       29.46        29.75        43.20        15.02        12.13        12.99 
TCGA-49-6745 TCGA-50-5044 TCGA-50-5045 TCGA-50-5049 TCGA-50-5051 TCGA-50-5055 
        4.93        20.48        71.47        48.82        14.96        25.81 
TCGA-50-5066 TCGA-50-5068 TCGA-50-5072 TCGA-50-5930 TCGA-50-5931 TCGA-50-5932 
        9.76        49.28         8.05         9.27         8.78        35.87 
TCGA-50-5933 TCGA-50-5935 TCGA-50-5936 TCGA-50-5939 TCGA-50-5941 TCGA-50-5942 
       77.88        21.47         8.45        15.12         9.37         4.44 
TCGA-50-5944 TCGA-50-5946 TCGA-50-6591 TCGA-50-6592 TCGA-50-6593 TCGA-50-6594 
       12.26        11.47         3.88        25.51        11.05        12.16 
TCGA-50-6595 TCGA-50-6597 TCGA-55-1594 TCGA-55-1595 TCGA-55-1596 TCGA-55-5899 
        6.21        33.37        38.73        48.62        45.17         2.86 
TCGA-55-6543 TCGA-55-6642 TCGA-55-6712 TCGA-64-1676 TCGA-64-1677 TCGA-64-1680 
        0.07        32.61         0.79        56.81        20.65        37.02 
TCGA-64-5774 TCGA-64-5775 TCGA-64-5778 TCGA-64-5779 TCGA-64-5781 TCGA-64-5815 
       83.84         0.10        30.44        16.67        39.52         7.33 
TCGA-67-3770 TCGA-67-3771 TCGA-67-3772 TCGA-67-3773 TCGA-67-3774 TCGA-67-6215 
        0.99         1.97         0.59         2.04         0.59         0.89 
TCGA-67-6216 TCGA-67-6217 TCGA-71-6725 TCGA-73-4659 TCGA-73-4662 TCGA-73-4666 
        0.69        13.87         2.01        23.38        29.95        20.28 
TCGA-73-4668 TCGA-73-4670 TCGA-73-4675 TCGA-73-4676 TCGA-73-4677 TCGA-91-6828 
       15.35         0.46         1.32         4.01         1.25         1.22 
TCGA-91-6829 TCGA-91-6831 TCGA-91-6835 TCGA-91-6836 
       41.33         1.28         1.15         0.36 

  WDR16 MUTATED WDR16 WILD-TYPE 
          20.05            0.07 
  WDR16 MUTATED WDR16 WILD-TYPE 
          52.57           85.32 
  WDR16 MUTATED WDR16 WILD-TYPE 
         30.020          12.825 
[1] "20.1 - 52.6 (30.0)" "0.1 - 85.3 (12.8)" 
     TCGA-05-4249      TCGA-05-4250      TCGA-05-4382      TCGA-05-4384 
"WDR16 WILD-TYPE" "WDR16 WILD-TYPE" "WDR16 WILD-TYPE" "WDR16 WILD-TYPE" 
     TCGA-05-4390      TCGA-05-4396      TCGA-05-4397      TCGA-05-4398 
"WDR16 WILD-TYPE" "WDR16 WILD-TYPE" "WDR16 WILD-TYPE" "WDR16 WILD-TYPE" 
     TCGA-05-4402      TCGA-05-4405      TCGA-05-4415      TCGA-05-4417 
"WDR16 WILD-TYPE"   "WDR16 MUTATED" "WDR16 WILD-TYPE" "WDR16 WILD-TYPE" 
     TCGA-05-4418      TCGA-05-4420      TCGA-05-4424      TCGA-05-4426 
"WDR16 WILD-TYPE" "WDR16 WILD-TYPE"   "WDR16 MUTATED" "WDR16 WILD-TYPE" 
     TCGA-05-4427      TCGA-05-4430      TCGA-05-4432      TCGA-05-4433 
"WDR16 WILD-TYPE" "WDR16 WILD-TYPE"   "WDR16 MUTATED" "WDR16 WILD-TYPE" 
     TCGA-05-4434      TCGA-05-5420      TCGA-05-5423      TCGA-05-5425 
"WDR16 WILD-TYPE" "WDR16 WILD-TYPE" "WDR16 WILD-TYPE" "WDR16 WILD-TYPE" 
     TCGA-05-5429      TCGA-05-5715      TCGA-35-3615      TCGA-35-4122 
"WDR16 WILD-TYPE" "WDR16 WILD-TYPE" "WDR16 WILD-TYPE" "WDR16 WILD-TYPE" 
     TCGA-35-4123      TCGA-35-5375      TCGA-38-4625      TCGA-38-4626 
"WDR16 WILD-TYPE" "WDR16 WILD-TYPE" "WDR16 WILD-TYPE" "WDR16 WILD-TYPE" 
     TCGA-38-4627      TCGA-38-4628      TCGA-38-4629      TCGA-38-4630 
"WDR16 WILD-TYPE" "WDR16 WILD-TYPE" "WDR16 WILD-TYPE" "WDR16 WILD-TYPE" 
     TCGA-38-4631      TCGA-38-4632      TCGA-38-6178      TCGA-44-2655 
"WDR16 WILD-TYPE" "WDR16 WILD-TYPE" "WDR16 WILD-TYPE" "WDR16 WILD-TYPE" 
     TCGA-44-2656      TCGA-44-2657      TCGA-44-2659      TCGA-44-2661 
"WDR16 WILD-TYPE" "WDR16 WILD-TYPE" "WDR16 WILD-TYPE" "WDR16 WILD-TYPE" 
     TCGA-44-2662      TCGA-44-2665      TCGA-44-2666      TCGA-44-2668 
"WDR16 WILD-TYPE" "WDR16 WILD-TYPE" "WDR16 WILD-TYPE" "WDR16 WILD-TYPE" 
     TCGA-44-3396      TCGA-44-3398      TCGA-44-3918      TCGA-44-3919 
"WDR16 WILD-TYPE" "WDR16 WILD-TYPE" "WDR16 WILD-TYPE" "WDR16 WILD-TYPE" 
     TCGA-44-4112      TCGA-44-5643      TCGA-44-5645      TCGA-44-6144 
"WDR16 WILD-TYPE" "WDR16 WILD-TYPE" "WDR16 WILD-TYPE" "WDR16 WILD-TYPE" 
     TCGA-44-6145      TCGA-44-6146      TCGA-44-6147      TCGA-44-6148 
"WDR16 WILD-TYPE" "WDR16 WILD-TYPE" "WDR16 WILD-TYPE" "WDR16 WILD-TYPE" 
     TCGA-44-6774      TCGA-44-6775      TCGA-44-6776      TCGA-44-6777 
"WDR16 WILD-TYPE" "WDR16 WILD-TYPE" "WDR16 WILD-TYPE" "WDR16 WILD-TYPE" 
     TCGA-44-6778      TCGA-44-6779      TCGA-49-4486      TCGA-49-4487 
"WDR16 WILD-TYPE" "WDR16 WILD-TYPE" "WDR16 WILD-TYPE" "WDR16 WILD-TYPE" 
     TCGA-49-4488      TCGA-49-4490      TCGA-49-4494      TCGA-49-4501 
"WDR16 WILD-TYPE" "WDR16 WILD-TYPE" "WDR16 WILD-TYPE" "WDR16 WILD-TYPE" 
     TCGA-49-4505      TCGA-49-4506      TCGA-49-4507      TCGA-49-4510 
"WDR16 WILD-TYPE" "WDR16 WILD-TYPE" "WDR16 WILD-TYPE" "WDR16 WILD-TYPE" 
     TCGA-49-4512      TCGA-49-4514      TCGA-49-6742      TCGA-49-6743 
"WDR16 WILD-TYPE" "WDR16 WILD-TYPE" "WDR16 WILD-TYPE" "WDR16 WILD-TYPE" 
     TCGA-49-6744      TCGA-49-6745      TCGA-50-5044      TCGA-50-5045 
"WDR16 WILD-TYPE" "WDR16 WILD-TYPE" "WDR16 WILD-TYPE" "WDR16 WILD-TYPE" 
     TCGA-50-5049      TCGA-50-5051      TCGA-50-5055      TCGA-50-5066 
"WDR16 WILD-TYPE" "WDR16 WILD-TYPE" "WDR16 WILD-TYPE" "WDR16 WILD-TYPE" 
     TCGA-50-5068      TCGA-50-5072      TCGA-50-5930      TCGA-50-5931 
"WDR16 WILD-TYPE" "WDR16 WILD-TYPE" "WDR16 WILD-TYPE" "WDR16 WILD-TYPE" 
     TCGA-50-5932      TCGA-50-5933      TCGA-50-5935      TCGA-50-5936 
"WDR16 WILD-TYPE" "WDR16 WILD-TYPE" "WDR16 WILD-TYPE" "WDR16 WILD-TYPE" 
     TCGA-50-5939      TCGA-50-5941      TCGA-50-5942      TCGA-50-5944 
"WDR16 WILD-TYPE" "WDR16 WILD-TYPE" "WDR16 WILD-TYPE" "WDR16 WILD-TYPE" 
     TCGA-50-5946      TCGA-50-6590      TCGA-50-6591      TCGA-50-6592 
"WDR16 WILD-TYPE"   "WDR16 MUTATED" "WDR16 WILD-TYPE" "WDR16 WILD-TYPE" 
     TCGA-50-6593      TCGA-50-6594      TCGA-50-6595      TCGA-50-6597 
"WDR16 WILD-TYPE" "WDR16 WILD-TYPE" "WDR16 WILD-TYPE" "WDR16 WILD-TYPE" 
     TCGA-55-1592      TCGA-55-1594      TCGA-55-1595      TCGA-55-1596 
  "WDR16 MUTATED" "WDR16 WILD-TYPE" "WDR16 WILD-TYPE" "WDR16 WILD-TYPE" 
     TCGA-55-5899      TCGA-55-6543      TCGA-55-6642      TCGA-55-6712 
"WDR16 WILD-TYPE" "WDR16 WILD-TYPE" "WDR16 WILD-TYPE" "WDR16 WILD-TYPE" 
     TCGA-64-1676      TCGA-64-1677      TCGA-64-1678      TCGA-64-1680 
"WDR16 WILD-TYPE" "WDR16 WILD-TYPE"   "WDR16 MUTATED" "WDR16 WILD-TYPE" 
     TCGA-64-5774      TCGA-64-5775      TCGA-64-5778      TCGA-64-5779 
"WDR16 WILD-TYPE" "WDR16 WILD-TYPE" "WDR16 WILD-TYPE" "WDR16 WILD-TYPE" 
     TCGA-64-5781      TCGA-64-5815      TCGA-67-3770      TCGA-67-3771 
"WDR16 WILD-TYPE" "WDR16 WILD-TYPE" "WDR16 WILD-TYPE" "WDR16 WILD-TYPE" 
     TCGA-67-3772      TCGA-67-3773      TCGA-67-3774      TCGA-67-6215 
"WDR16 WILD-TYPE" "WDR16 WILD-TYPE" "WDR16 WILD-TYPE" "WDR16 WILD-TYPE" 
     TCGA-67-6216      TCGA-67-6217      TCGA-71-6725      TCGA-73-4658 
"WDR16 WILD-TYPE" "WDR16 WILD-TYPE" "WDR16 WILD-TYPE"   "WDR16 MUTATED" 
     TCGA-73-4659      TCGA-73-4662      TCGA-73-4666      TCGA-73-4668 
"WDR16 WILD-TYPE" "WDR16 WILD-TYPE" "WDR16 WILD-TYPE" "WDR16 WILD-TYPE" 
     TCGA-73-4670      TCGA-73-4675      TCGA-73-4676      TCGA-73-4677 
"WDR16 WILD-TYPE" "WDR16 WILD-TYPE" "WDR16 WILD-TYPE" "WDR16 WILD-TYPE" 
     TCGA-91-6828      TCGA-91-6829      TCGA-91-6831      TCGA-91-6835 
"WDR16 WILD-TYPE" "WDR16 WILD-TYPE" "WDR16 WILD-TYPE" "WDR16 WILD-TYPE" 
     TCGA-91-6836 
"WDR16 WILD-TYPE" 
     TCGA-05-4249      TCGA-05-4250      TCGA-05-4382      TCGA-05-4384 
"WDR16 WILD-TYPE" "WDR16 WILD-TYPE" "WDR16 WILD-TYPE" "WDR16 WILD-TYPE" 
     TCGA-05-4390      TCGA-05-4396      TCGA-05-4397      TCGA-05-4398 
"WDR16 WILD-TYPE" "WDR16 WILD-TYPE" "WDR16 WILD-TYPE" "WDR16 WILD-TYPE" 
     TCGA-05-4402      TCGA-05-4405      TCGA-05-4415      TCGA-05-4417 
"WDR16 WILD-TYPE"   "WDR16 MUTATED" "WDR16 WILD-TYPE" "WDR16 WILD-TYPE" 
     TCGA-05-4418      TCGA-05-4420      TCGA-05-4424      TCGA-05-4426 
"WDR16 WILD-TYPE" "WDR16 WILD-TYPE"   "WDR16 MUTATED" "WDR16 WILD-TYPE" 
     TCGA-05-4427      TCGA-05-4430      TCGA-05-4432      TCGA-05-4433 
"WDR16 WILD-TYPE" "WDR16 WILD-TYPE"   "WDR16 MUTATED" "WDR16 WILD-TYPE" 
     TCGA-05-4434      TCGA-05-5420      TCGA-05-5423      TCGA-05-5425 
"WDR16 WILD-TYPE" "WDR16 WILD-TYPE" "WDR16 WILD-TYPE" "WDR16 WILD-TYPE" 
     TCGA-05-5429      TCGA-05-5715      TCGA-35-3615      TCGA-35-4122 
"WDR16 WILD-TYPE" "WDR16 WILD-TYPE" "WDR16 WILD-TYPE" "WDR16 WILD-TYPE" 
     TCGA-35-4123      TCGA-35-5375      TCGA-38-4625      TCGA-38-4626 
"WDR16 WILD-TYPE" "WDR16 WILD-TYPE" "WDR16 WILD-TYPE" "WDR16 WILD-TYPE" 
     TCGA-38-4627      TCGA-38-4628      TCGA-38-4629      TCGA-38-4630 
"WDR16 WILD-TYPE" "WDR16 WILD-TYPE" "WDR16 WILD-TYPE" "WDR16 WILD-TYPE" 
     TCGA-38-4631      TCGA-38-4632      TCGA-38-6178      TCGA-44-2655 
"WDR16 WILD-TYPE" "WDR16 WILD-TYPE" "WDR16 WILD-TYPE" "WDR16 WILD-TYPE" 
     TCGA-44-2656      TCGA-44-2657      TCGA-44-2659      TCGA-44-2661 
"WDR16 WILD-TYPE" "WDR16 WILD-TYPE" "WDR16 WILD-TYPE" "WDR16 WILD-TYPE" 
     TCGA-44-2662      TCGA-44-2665      TCGA-44-2666      TCGA-44-2668 
"WDR16 WILD-TYPE" "WDR16 WILD-TYPE" "WDR16 WILD-TYPE" "WDR16 WILD-TYPE" 
     TCGA-44-3396      TCGA-44-3398      TCGA-44-3918      TCGA-44-3919 
"WDR16 WILD-TYPE" "WDR16 WILD-TYPE" "WDR16 WILD-TYPE" "WDR16 WILD-TYPE" 
     TCGA-44-4112      TCGA-44-5643      TCGA-44-5645      TCGA-44-6144 
"WDR16 WILD-TYPE" "WDR16 WILD-TYPE" "WDR16 WILD-TYPE" "WDR16 WILD-TYPE" 
     TCGA-44-6145      TCGA-44-6146      TCGA-44-6147      TCGA-44-6148 
"WDR16 WILD-TYPE" "WDR16 WILD-TYPE" "WDR16 WILD-TYPE" "WDR16 WILD-TYPE" 
     TCGA-44-6774      TCGA-44-6775      TCGA-44-6776      TCGA-44-6777 
"WDR16 WILD-TYPE" "WDR16 WILD-TYPE" "WDR16 WILD-TYPE" "WDR16 WILD-TYPE" 
     TCGA-44-6778      TCGA-44-6779      TCGA-49-4486      TCGA-49-4487 
"WDR16 WILD-TYPE" "WDR16 WILD-TYPE" "WDR16 WILD-TYPE" "WDR16 WILD-TYPE" 
     TCGA-49-4488      TCGA-49-4490      TCGA-49-4494      TCGA-49-4501 
"WDR16 WILD-TYPE" "WDR16 WILD-TYPE" "WDR16 WILD-TYPE" "WDR16 WILD-TYPE" 
     TCGA-49-4505      TCGA-49-4506      TCGA-49-4507      TCGA-49-4510 
"WDR16 WILD-TYPE" "WDR16 WILD-TYPE" "WDR16 WILD-TYPE" "WDR16 WILD-TYPE" 
     TCGA-49-4512      TCGA-49-4514      TCGA-49-6742      TCGA-49-6743 
"WDR16 WILD-TYPE" "WDR16 WILD-TYPE" "WDR16 WILD-TYPE" "WDR16 WILD-TYPE" 
     TCGA-49-6744      TCGA-49-6745      TCGA-50-5044      TCGA-50-5045 
"WDR16 WILD-TYPE" "WDR16 WILD-TYPE" "WDR16 WILD-TYPE" "WDR16 WILD-TYPE" 
     TCGA-50-5049      TCGA-50-5051      TCGA-50-5055      TCGA-50-5066 
"WDR16 WILD-TYPE" "WDR16 WILD-TYPE" "WDR16 WILD-TYPE" "WDR16 WILD-TYPE" 
     TCGA-50-5068      TCGA-50-5072      TCGA-50-5930      TCGA-50-5931 
"WDR16 WILD-TYPE" "WDR16 WILD-TYPE" "WDR16 WILD-TYPE" "WDR16 WILD-TYPE" 
     TCGA-50-5932      TCGA-50-5933      TCGA-50-5935      TCGA-50-5936 
"WDR16 WILD-TYPE" "WDR16 WILD-TYPE" "WDR16 WILD-TYPE" "WDR16 WILD-TYPE" 
     TCGA-50-5939      TCGA-50-5941      TCGA-50-5942      TCGA-50-5944 
"WDR16 WILD-TYPE" "WDR16 WILD-TYPE" "WDR16 WILD-TYPE" "WDR16 WILD-TYPE" 
     TCGA-50-5946      TCGA-50-6590      TCGA-50-6591      TCGA-50-6592 
"WDR16 WILD-TYPE"   "WDR16 MUTATED" "WDR16 WILD-TYPE" "WDR16 WILD-TYPE" 
     TCGA-50-6593      TCGA-50-6594      TCGA-50-6595      TCGA-50-6597 
"WDR16 WILD-TYPE" "WDR16 WILD-TYPE" "WDR16 WILD-TYPE" "WDR16 WILD-TYPE" 
     TCGA-55-1592      TCGA-55-1594      TCGA-55-1595      TCGA-55-1596 
  "WDR16 MUTATED" "WDR16 WILD-TYPE" "WDR16 WILD-TYPE" "WDR16 WILD-TYPE" 
     TCGA-55-5899      TCGA-55-6543      TCGA-55-6642      TCGA-55-6712 
"WDR16 WILD-TYPE" "WDR16 WILD-TYPE" "WDR16 WILD-TYPE" "WDR16 WILD-TYPE" 
     TCGA-64-1676      TCGA-64-1677      TCGA-64-1678      TCGA-64-1680 
"WDR16 WILD-TYPE" "WDR16 WILD-TYPE"   "WDR16 MUTATED" "WDR16 WILD-TYPE" 
     TCGA-64-5774      TCGA-64-5775      TCGA-64-5778      TCGA-64-5779 
"WDR16 WILD-TYPE" "WDR16 WILD-TYPE" "WDR16 WILD-TYPE" "WDR16 WILD-TYPE" 
     TCGA-64-5781      TCGA-64-5815      TCGA-67-3770      TCGA-67-3771 
"WDR16 WILD-TYPE" "WDR16 WILD-TYPE" "WDR16 WILD-TYPE" "WDR16 WILD-TYPE" 
     TCGA-67-3772      TCGA-67-3773      TCGA-67-3774      TCGA-67-6215 
"WDR16 WILD-TYPE" "WDR16 WILD-TYPE" "WDR16 WILD-TYPE" "WDR16 WILD-TYPE" 
     TCGA-67-6216      TCGA-67-6217      TCGA-71-6725      TCGA-73-4658 
"WDR16 WILD-TYPE" "WDR16 WILD-TYPE" "WDR16 WILD-TYPE"   "WDR16 MUTATED" 
     TCGA-73-4659      TCGA-73-4662      TCGA-73-4666      TCGA-73-4668 
"WDR16 WILD-TYPE" "WDR16 WILD-TYPE" "WDR16 WILD-TYPE" "WDR16 WILD-TYPE" 
     TCGA-73-4670      TCGA-73-4675      TCGA-73-4676      TCGA-73-4677 
"WDR16 WILD-TYPE" "WDR16 WILD-TYPE" "WDR16 WILD-TYPE" "WDR16 WILD-TYPE" 
     TCGA-91-6828      TCGA-91-6829      TCGA-91-6831      TCGA-91-6835 
"WDR16 WILD-TYPE" "WDR16 WILD-TYPE" "WDR16 WILD-TYPE" "WDR16 WILD-TYPE" 
     TCGA-91-6836 
"WDR16 WILD-TYPE" 
     TCGA-05-4249      TCGA-05-4250      TCGA-05-4382      TCGA-05-4384 
"WDR16 WILD-TYPE" "WDR16 WILD-TYPE" "WDR16 WILD-TYPE" "WDR16 WILD-TYPE" 
     TCGA-05-4390      TCGA-05-4396      TCGA-05-4397      TCGA-05-4398 
"WDR16 WILD-TYPE" "WDR16 WILD-TYPE" "WDR16 WILD-TYPE" "WDR16 WILD-TYPE" 
     TCGA-05-4402      TCGA-05-4405      TCGA-05-4415      TCGA-05-4417 
"WDR16 WILD-TYPE"   "WDR16 MUTATED" "WDR16 WILD-TYPE" "WDR16 WILD-TYPE" 
     TCGA-05-4418      TCGA-05-4420      TCGA-05-4424      TCGA-05-4426 
"WDR16 WILD-TYPE" "WDR16 WILD-TYPE"   "WDR16 MUTATED" "WDR16 WILD-TYPE" 
     TCGA-05-4427      TCGA-05-4430      TCGA-05-4432      TCGA-05-4433 
"WDR16 WILD-TYPE" "WDR16 WILD-TYPE"   "WDR16 MUTATED" "WDR16 WILD-TYPE" 
     TCGA-05-4434      TCGA-05-5420      TCGA-05-5423      TCGA-05-5425 
"WDR16 WILD-TYPE" "WDR16 WILD-TYPE" "WDR16 WILD-TYPE" "WDR16 WILD-TYPE" 
     TCGA-05-5429      TCGA-05-5715      TCGA-35-3615      TCGA-35-4122 
"WDR16 WILD-TYPE" "WDR16 WILD-TYPE" "WDR16 WILD-TYPE" "WDR16 WILD-TYPE" 
     TCGA-35-4123      TCGA-35-5375      TCGA-38-4625      TCGA-38-4626 
"WDR16 WILD-TYPE" "WDR16 WILD-TYPE" "WDR16 WILD-TYPE" "WDR16 WILD-TYPE" 
     TCGA-38-4627      TCGA-38-4628      TCGA-38-4629      TCGA-38-4630 
"WDR16 WILD-TYPE" "WDR16 WILD-TYPE" "WDR16 WILD-TYPE" "WDR16 WILD-TYPE" 
     TCGA-38-4631      TCGA-38-4632      TCGA-38-6178      TCGA-44-2655 
"WDR16 WILD-TYPE" "WDR16 WILD-TYPE" "WDR16 WILD-TYPE" "WDR16 WILD-TYPE" 
     TCGA-44-2656      TCGA-44-2657      TCGA-44-2659      TCGA-44-2661 
"WDR16 WILD-TYPE" "WDR16 WILD-TYPE" "WDR16 WILD-TYPE" "WDR16 WILD-TYPE" 
     TCGA-44-2662      TCGA-44-2665      TCGA-44-2666      TCGA-44-2668 
"WDR16 WILD-TYPE" "WDR16 WILD-TYPE" "WDR16 WILD-TYPE" "WDR16 WILD-TYPE" 
     TCGA-44-3396      TCGA-44-3398      TCGA-44-3918      TCGA-44-3919 
"WDR16 WILD-TYPE" "WDR16 WILD-TYPE" "WDR16 WILD-TYPE" "WDR16 WILD-TYPE" 
     TCGA-44-4112      TCGA-44-5643      TCGA-44-5645      TCGA-44-6144 
"WDR16 WILD-TYPE" "WDR16 WILD-TYPE" "WDR16 WILD-TYPE" "WDR16 WILD-TYPE" 
     TCGA-44-6145      TCGA-44-6146      TCGA-44-6147      TCGA-44-6148 
"WDR16 WILD-TYPE" "WDR16 WILD-TYPE" "WDR16 WILD-TYPE" "WDR16 WILD-TYPE" 
     TCGA-44-6774      TCGA-44-6775      TCGA-44-6776      TCGA-44-6777 
"WDR16 WILD-TYPE" "WDR16 WILD-TYPE" "WDR16 WILD-TYPE" "WDR16 WILD-TYPE" 
     TCGA-44-6778      TCGA-44-6779      TCGA-49-4486      TCGA-49-4487 
"WDR16 WILD-TYPE" "WDR16 WILD-TYPE" "WDR16 WILD-TYPE" "WDR16 WILD-TYPE" 
     TCGA-49-4488      TCGA-49-4490      TCGA-49-4494      TCGA-49-4501 
"WDR16 WILD-TYPE" "WDR16 WILD-TYPE" "WDR16 WILD-TYPE" "WDR16 WILD-TYPE" 
     TCGA-49-4505      TCGA-49-4506      TCGA-49-4507      TCGA-49-4510 
"WDR16 WILD-TYPE" "WDR16 WILD-TYPE" "WDR16 WILD-TYPE" "WDR16 WILD-TYPE" 
     TCGA-49-4512      TCGA-49-4514      TCGA-49-6742      TCGA-49-6743 
"WDR16 WILD-TYPE" "WDR16 WILD-TYPE" "WDR16 WILD-TYPE" "WDR16 WILD-TYPE" 
     TCGA-49-6744      TCGA-49-6745      TCGA-50-5044      TCGA-50-5045 
"WDR16 WILD-TYPE" "WDR16 WILD-TYPE" "WDR16 WILD-TYPE" "WDR16 WILD-TYPE" 
     TCGA-50-5049      TCGA-50-5051      TCGA-50-5055      TCGA-50-5066 
"WDR16 WILD-TYPE" "WDR16 WILD-TYPE" "WDR16 WILD-TYPE" "WDR16 WILD-TYPE" 
     TCGA-50-5068      TCGA-50-5072      TCGA-50-5930      TCGA-50-5931 
"WDR16 WILD-TYPE" "WDR16 WILD-TYPE" "WDR16 WILD-TYPE" "WDR16 WILD-TYPE" 
     TCGA-50-5932      TCGA-50-5933      TCGA-50-5935      TCGA-50-5936 
"WDR16 WILD-TYPE" "WDR16 WILD-TYPE" "WDR16 WILD-TYPE" "WDR16 WILD-TYPE" 
     TCGA-50-5939      TCGA-50-5941      TCGA-50-5942      TCGA-50-5944 
"WDR16 WILD-TYPE" "WDR16 WILD-TYPE" "WDR16 WILD-TYPE" "WDR16 WILD-TYPE" 
     TCGA-50-5946      TCGA-50-6590      TCGA-50-6591      TCGA-50-6592 
"WDR16 WILD-TYPE"   "WDR16 MUTATED" "WDR16 WILD-TYPE" "WDR16 WILD-TYPE" 
     TCGA-50-6593      TCGA-50-6594      TCGA-50-6595      TCGA-50-6597 
"WDR16 WILD-TYPE" "WDR16 WILD-TYPE" "WDR16 WILD-TYPE" "WDR16 WILD-TYPE" 
     TCGA-55-1592      TCGA-55-1594      TCGA-55-1595      TCGA-55-1596 
  "WDR16 MUTATED" "WDR16 WILD-TYPE" "WDR16 WILD-TYPE" "WDR16 WILD-TYPE" 
     TCGA-55-5899      TCGA-55-6543      TCGA-55-6642      TCGA-55-6712 
"WDR16 WILD-TYPE" "WDR16 WILD-TYPE" "WDR16 WILD-TYPE" "WDR16 WILD-TYPE" 
     TCGA-64-1676      TCGA-64-1677      TCGA-64-1678      TCGA-64-1680 
"WDR16 WILD-TYPE" "WDR16 WILD-TYPE"   "WDR16 MUTATED" "WDR16 WILD-TYPE" 
     TCGA-64-5774      TCGA-64-5775      TCGA-64-5778      TCGA-64-5779 
"WDR16 WILD-TYPE" "WDR16 WILD-TYPE" "WDR16 WILD-TYPE" "WDR16 WILD-TYPE" 
     TCGA-64-5781      TCGA-64-5815      TCGA-67-3770      TCGA-67-3771 
"WDR16 WILD-TYPE" "WDR16 WILD-TYPE" "WDR16 WILD-TYPE" "WDR16 WILD-TYPE" 
     TCGA-67-3772      TCGA-67-3773      TCGA-67-3774      TCGA-67-6215 
"WDR16 WILD-TYPE" "WDR16 WILD-TYPE" "WDR16 WILD-TYPE" "WDR16 WILD-TYPE" 
     TCGA-67-6216      TCGA-67-6217      TCGA-71-6725      TCGA-73-4658 
"WDR16 WILD-TYPE" "WDR16 WILD-TYPE" "WDR16 WILD-TYPE"   "WDR16 MUTATED" 
     TCGA-73-4659      TCGA-73-4662      TCGA-73-4666      TCGA-73-4668 
"WDR16 WILD-TYPE" "WDR16 WILD-TYPE" "WDR16 WILD-TYPE" "WDR16 WILD-TYPE" 
     TCGA-73-4670      TCGA-73-4675      TCGA-73-4676      TCGA-73-4677 
"WDR16 WILD-TYPE" "WDR16 WILD-TYPE" "WDR16 WILD-TYPE" "WDR16 WILD-TYPE" 
     TCGA-91-6828      TCGA-91-6829      TCGA-91-6831      TCGA-91-6835 
"WDR16 WILD-TYPE" "WDR16 WILD-TYPE" "WDR16 WILD-TYPE" "WDR16 WILD-TYPE" 
     TCGA-91-6836 
"WDR16 WILD-TYPE" 
[1] "hr=" "1.4"
D250V2, continuous
D250V3, binary
[1] "tbl2"
                 cls
clus              [,1] [,2]
  WDR16 MUTATED      4    4
  WDR16 WILD-TYPE   89   75
        clus
vv       WDR16 MUTATED WDR16 WILD-TYPE
  FEMALE             4              89
  MALE               4              75
D250V4, continuous
D250V5, multiclass
D250V6, multiclass
    clus
vv   WDR16 MUTATED WDR16 WILD-TYPE
  T1             0              41
  T2             7             101
  T3             1              13
  T4             0               8
D250V7, multiclass
       clus
vv      WDR16 MUTATED WDR16 WILD-TYPE
  N0                7              88
  N1                1              36
  N2+N3             0              35
D250V8, multiclass
    clus
vv   WDR16 MUTATED WDR16 WILD-TYPE
  M0             8             129
  M1             0               9
  MX             0              22
D250V9, multiclass
     clus
vv    WDR16 MUTATED WDR16 WILD-TYPE
  I               5              83
  II              3              30
  III             0              39
  IV              0               9
D250V10, binary
[1] "tbl2"
                 cls
clus              [,1] [,2]
  WDR16 MUTATED      0    8
  WDR16 WILD-TYPE   16  148
     clus
vv    WDR16 MUTATED WDR16 WILD-TYPE
  NO              0              16
  YES             8             148
D250V11, continuous
D250V12, continuous
D250V13, multiclass
                                             clus
vv                                            WDR16 MUTATED WDR16 WILD-TYPE
  CURRENT REFORMED SMOKER FOR < OR = 15 YEARS             5              57
  CURRENT REFORMED SMOKER FOR > 15 YEARS                  2              44
  CURRENT SMOKER                                          1              27
  LIFELONG NON-SMOKER                                     0              24
D250V14, continuous

Clustering(251) Variable = SIGLEC9 MUTATION ANALYSIS
D251V1, survival
                   sevent
clus2                0  1
  SIGLEC9 MUTATED    4  5
  SIGLEC9 WILD-TYPE 95 45
  SIGLEC9 MUTATED SIGLEC9 WILD-TYPE 
                9               140 
  SIGLEC9 MUTATED SIGLEC9 WILD-TYPE 
                5                45 
$`SIGLEC9 MUTATED`
TCGA-05-4396 TCGA-05-4398 TCGA-38-4630 TCGA-44-2656 TCGA-44-6776 TCGA-49-4488 
        9.96        47.05        35.28        19.10        63.72        28.57 
TCGA-49-4494 TCGA-50-5049 TCGA-64-1677 
       35.54        48.82        20.65 

$`SIGLEC9 WILD-TYPE`
TCGA-05-4249 TCGA-05-4250 TCGA-05-4382 TCGA-05-4384 TCGA-05-4390 TCGA-05-4397 
       38.07         3.98        19.92        14.01        37.02        24.03 
TCGA-05-4402 TCGA-05-4405 TCGA-05-4415 TCGA-05-4417 TCGA-05-4418 TCGA-05-4420 
        8.02        20.05         2.96        14.93         8.98        29.95 
TCGA-05-4424 TCGA-05-4426 TCGA-05-4427 TCGA-05-4430 TCGA-05-4432 TCGA-05-4433 
       30.02        26.01        26.01        25.02        25.02        24.00 
TCGA-05-4434 TCGA-05-5420 TCGA-05-5423 TCGA-05-5425 TCGA-05-5429 TCGA-05-5715 
       15.02         1.02         4.96         2.96         0.99         2.04 
TCGA-35-3615 TCGA-35-4122 TCGA-35-4123 TCGA-35-5375 TCGA-38-4625 TCGA-38-4626 
        0.46         7.36         5.95         8.68        47.61        85.32 
TCGA-38-4627 TCGA-38-4628 TCGA-38-4629 TCGA-38-4631 TCGA-38-4632 TCGA-38-6178 
       37.71        49.02        28.37        11.64        44.61         5.19 
TCGA-44-2655 TCGA-44-2657 TCGA-44-2659 TCGA-44-2661 TCGA-44-2662 TCGA-44-2665 
       18.87        13.15        17.39         3.39        15.78        13.15 
TCGA-44-2666 TCGA-44-2668 TCGA-44-3396 TCGA-44-3398 TCGA-44-3918 TCGA-44-3919 
        3.19         8.09        10.22         8.32         6.44         6.21 
TCGA-44-4112 TCGA-44-5643 TCGA-44-5645 TCGA-44-6144 TCGA-44-6145 TCGA-44-6146 
        4.60         3.48         6.84         0.30         3.35         9.93 
TCGA-44-6147 TCGA-44-6148 TCGA-44-6774 TCGA-44-6775 TCGA-44-6777 TCGA-44-6778 
        7.76         3.12         5.42         2.70        32.45        36.49 
TCGA-44-6779 TCGA-49-4486 TCGA-49-4487 TCGA-49-4490 TCGA-49-4501 TCGA-49-4505 
       16.41        76.21        28.11        12.66        46.72        14.07 
TCGA-49-4506 TCGA-49-4507 TCGA-49-4510 TCGA-49-4512 TCGA-49-4514 TCGA-49-6742 
       32.84         8.81        29.46        29.75        43.20        15.02 
TCGA-49-6743 TCGA-49-6744 TCGA-49-6745 TCGA-50-5044 TCGA-50-5045 TCGA-50-5051 
       12.13        12.99         4.93        20.48        71.47        14.96 
TCGA-50-5055 TCGA-50-5066 TCGA-50-5068 TCGA-50-5072 TCGA-50-5930 TCGA-50-5931 
       25.81         9.76        49.28         8.05         9.27         8.78 
TCGA-50-5932 TCGA-50-5933 TCGA-50-5935 TCGA-50-5936 TCGA-50-5939 TCGA-50-5941 
       35.87        77.88        21.47         8.45        15.12         9.37 
TCGA-50-5942 TCGA-50-5944 TCGA-50-5946 TCGA-50-6590 TCGA-50-6591 TCGA-50-6592 
        4.44        12.26        11.47        42.31         3.88        25.51 
TCGA-50-6593 TCGA-50-6594 TCGA-50-6595 TCGA-50-6597 TCGA-55-1592 TCGA-55-1594 
       11.05        12.16         6.21        33.37        23.05        38.73 
TCGA-55-1595 TCGA-55-1596 TCGA-55-5899 TCGA-55-6543 TCGA-55-6642 TCGA-55-6712 
       48.62        45.17         2.86         0.07        32.61         0.79 
TCGA-64-1676 TCGA-64-1678 TCGA-64-1680 TCGA-64-5774 TCGA-64-5775 TCGA-64-5778 
       56.81        39.09        37.02        83.84         0.10        30.44 
TCGA-64-5779 TCGA-64-5781 TCGA-64-5815 TCGA-67-3770 TCGA-67-3771 TCGA-67-3772 
       16.67        39.52         7.33         0.99         1.97         0.59 
TCGA-67-3773 TCGA-67-3774 TCGA-67-6215 TCGA-67-6216 TCGA-67-6217 TCGA-71-6725 
        2.04         0.59         0.89         0.69        13.87         2.01 
TCGA-73-4658 TCGA-73-4659 TCGA-73-4662 TCGA-73-4666 TCGA-73-4668 TCGA-73-4670 
       52.57        23.38        29.95        20.28        15.35         0.46 
TCGA-73-4675 TCGA-73-4676 TCGA-73-4677 TCGA-91-6828 TCGA-91-6829 TCGA-91-6831 
        1.32         4.01         1.25         1.22        41.33         1.28 
TCGA-91-6835 TCGA-91-6836 
        1.15         0.36 

  SIGLEC9 MUTATED SIGLEC9 WILD-TYPE 
             9.96              0.07 
  SIGLEC9 MUTATED SIGLEC9 WILD-TYPE 
            63.72             85.32 
  SIGLEC9 MUTATED SIGLEC9 WILD-TYPE 
           35.280            12.825 
[1] "10.0 - 63.7 (35.3)" "0.1 - 85.3 (12.8)" 
       TCGA-05-4249        TCGA-05-4250        TCGA-05-4382        TCGA-05-4384 
"SIGLEC9 WILD-TYPE" "SIGLEC9 WILD-TYPE" "SIGLEC9 WILD-TYPE" "SIGLEC9 WILD-TYPE" 
       TCGA-05-4390        TCGA-05-4396        TCGA-05-4397        TCGA-05-4398 
"SIGLEC9 WILD-TYPE"   "SIGLEC9 MUTATED" "SIGLEC9 WILD-TYPE"   "SIGLEC9 MUTATED" 
       TCGA-05-4402        TCGA-05-4405        TCGA-05-4415        TCGA-05-4417 
"SIGLEC9 WILD-TYPE" "SIGLEC9 WILD-TYPE" "SIGLEC9 WILD-TYPE" "SIGLEC9 WILD-TYPE" 
       TCGA-05-4418        TCGA-05-4420        TCGA-05-4424        TCGA-05-4426 
"SIGLEC9 WILD-TYPE" "SIGLEC9 WILD-TYPE" "SIGLEC9 WILD-TYPE" "SIGLEC9 WILD-TYPE" 
       TCGA-05-4427        TCGA-05-4430        TCGA-05-4432        TCGA-05-4433 
"SIGLEC9 WILD-TYPE" "SIGLEC9 WILD-TYPE" "SIGLEC9 WILD-TYPE" "SIGLEC9 WILD-TYPE" 
       TCGA-05-4434        TCGA-05-5420        TCGA-05-5423        TCGA-05-5425 
"SIGLEC9 WILD-TYPE" "SIGLEC9 WILD-TYPE" "SIGLEC9 WILD-TYPE" "SIGLEC9 WILD-TYPE" 
       TCGA-05-5429        TCGA-05-5715        TCGA-35-3615        TCGA-35-4122 
"SIGLEC9 WILD-TYPE" "SIGLEC9 WILD-TYPE" "SIGLEC9 WILD-TYPE" "SIGLEC9 WILD-TYPE" 
       TCGA-35-4123        TCGA-35-5375        TCGA-38-4625        TCGA-38-4626 
"SIGLEC9 WILD-TYPE" "SIGLEC9 WILD-TYPE" "SIGLEC9 WILD-TYPE" "SIGLEC9 WILD-TYPE" 
       TCGA-38-4627        TCGA-38-4628        TCGA-38-4629        TCGA-38-4630 
"SIGLEC9 WILD-TYPE" "SIGLEC9 WILD-TYPE" "SIGLEC9 WILD-TYPE"   "SIGLEC9 MUTATED" 
       TCGA-38-4631        TCGA-38-4632        TCGA-38-6178        TCGA-44-2655 
"SIGLEC9 WILD-TYPE" "SIGLEC9 WILD-TYPE" "SIGLEC9 WILD-TYPE" "SIGLEC9 WILD-TYPE" 
       TCGA-44-2656        TCGA-44-2657        TCGA-44-2659        TCGA-44-2661 
  "SIGLEC9 MUTATED" "SIGLEC9 WILD-TYPE" "SIGLEC9 WILD-TYPE" "SIGLEC9 WILD-TYPE" 
       TCGA-44-2662        TCGA-44-2665        TCGA-44-2666        TCGA-44-2668 
"SIGLEC9 WILD-TYPE" "SIGLEC9 WILD-TYPE" "SIGLEC9 WILD-TYPE" "SIGLEC9 WILD-TYPE" 
       TCGA-44-3396        TCGA-44-3398        TCGA-44-3918        TCGA-44-3919 
"SIGLEC9 WILD-TYPE" "SIGLEC9 WILD-TYPE" "SIGLEC9 WILD-TYPE" "SIGLEC9 WILD-TYPE" 
       TCGA-44-4112        TCGA-44-5643        TCGA-44-5645        TCGA-44-6144 
"SIGLEC9 WILD-TYPE" "SIGLEC9 WILD-TYPE" "SIGLEC9 WILD-TYPE" "SIGLEC9 WILD-TYPE" 
       TCGA-44-6145        TCGA-44-6146        TCGA-44-6147        TCGA-44-6148 
"SIGLEC9 WILD-TYPE" "SIGLEC9 WILD-TYPE" "SIGLEC9 WILD-TYPE" "SIGLEC9 WILD-TYPE" 
       TCGA-44-6774        TCGA-44-6775        TCGA-44-6776        TCGA-44-6777 
"SIGLEC9 WILD-TYPE" "SIGLEC9 WILD-TYPE"   "SIGLEC9 MUTATED" "SIGLEC9 WILD-TYPE" 
       TCGA-44-6778        TCGA-44-6779        TCGA-49-4486        TCGA-49-4487 
"SIGLEC9 WILD-TYPE" "SIGLEC9 WILD-TYPE" "SIGLEC9 WILD-TYPE" "SIGLEC9 WILD-TYPE" 
       TCGA-49-4488        TCGA-49-4490        TCGA-49-4494        TCGA-49-4501 
  "SIGLEC9 MUTATED" "SIGLEC9 WILD-TYPE"   "SIGLEC9 MUTATED" "SIGLEC9 WILD-TYPE" 
       TCGA-49-4505        TCGA-49-4506        TCGA-49-4507        TCGA-49-4510 
"SIGLEC9 WILD-TYPE" "SIGLEC9 WILD-TYPE" "SIGLEC9 WILD-TYPE" "SIGLEC9 WILD-TYPE" 
       TCGA-49-4512        TCGA-49-4514        TCGA-49-6742        TCGA-49-6743 
"SIGLEC9 WILD-TYPE" "SIGLEC9 WILD-TYPE" "SIGLEC9 WILD-TYPE" "SIGLEC9 WILD-TYPE" 
       TCGA-49-6744        TCGA-49-6745        TCGA-50-5044        TCGA-50-5045 
"SIGLEC9 WILD-TYPE" "SIGLEC9 WILD-TYPE" "SIGLEC9 WILD-TYPE" "SIGLEC9 WILD-TYPE" 
       TCGA-50-5049        TCGA-50-5051        TCGA-50-5055        TCGA-50-5066 
  "SIGLEC9 MUTATED" "SIGLEC9 WILD-TYPE" "SIGLEC9 WILD-TYPE" "SIGLEC9 WILD-TYPE" 
       TCGA-50-5068        TCGA-50-5072        TCGA-50-5930        TCGA-50-5931 
"SIGLEC9 WILD-TYPE" "SIGLEC9 WILD-TYPE" "SIGLEC9 WILD-TYPE" "SIGLEC9 WILD-TYPE" 
       TCGA-50-5932        TCGA-50-5933        TCGA-50-5935        TCGA-50-5936 
"SIGLEC9 WILD-TYPE" "SIGLEC9 WILD-TYPE" "SIGLEC9 WILD-TYPE" "SIGLEC9 WILD-TYPE" 
       TCGA-50-5939        TCGA-50-5941        TCGA-50-5942        TCGA-50-5944 
"SIGLEC9 WILD-TYPE" "SIGLEC9 WILD-TYPE" "SIGLEC9 WILD-TYPE" "SIGLEC9 WILD-TYPE" 
       TCGA-50-5946        TCGA-50-6590        TCGA-50-6591        TCGA-50-6592 
"SIGLEC9 WILD-TYPE" "SIGLEC9 WILD-TYPE" "SIGLEC9 WILD-TYPE" "SIGLEC9 WILD-TYPE" 
       TCGA-50-6593        TCGA-50-6594        TCGA-50-6595        TCGA-50-6597 
"SIGLEC9 WILD-TYPE" "SIGLEC9 WILD-TYPE" "SIGLEC9 WILD-TYPE" "SIGLEC9 WILD-TYPE" 
       TCGA-55-1592        TCGA-55-1594        TCGA-55-1595        TCGA-55-1596 
"SIGLEC9 WILD-TYPE" "SIGLEC9 WILD-TYPE" "SIGLEC9 WILD-TYPE" "SIGLEC9 WILD-TYPE" 
       TCGA-55-5899        TCGA-55-6543        TCGA-55-6642        TCGA-55-6712 
"SIGLEC9 WILD-TYPE" "SIGLEC9 WILD-TYPE" "SIGLEC9 WILD-TYPE" "SIGLEC9 WILD-TYPE" 
       TCGA-64-1676        TCGA-64-1677        TCGA-64-1678        TCGA-64-1680 
"SIGLEC9 WILD-TYPE"   "SIGLEC9 MUTATED" "SIGLEC9 WILD-TYPE" "SIGLEC9 WILD-TYPE" 
       TCGA-64-5774        TCGA-64-5775        TCGA-64-5778        TCGA-64-5779 
"SIGLEC9 WILD-TYPE" "SIGLEC9 WILD-TYPE" "SIGLEC9 WILD-TYPE" "SIGLEC9 WILD-TYPE" 
       TCGA-64-5781        TCGA-64-5815        TCGA-67-3770        TCGA-67-3771 
"SIGLEC9 WILD-TYPE" "SIGLEC9 WILD-TYPE" "SIGLEC9 WILD-TYPE" "SIGLEC9 WILD-TYPE" 
       TCGA-67-3772        TCGA-67-3773        TCGA-67-3774        TCGA-67-6215 
"SIGLEC9 WILD-TYPE" "SIGLEC9 WILD-TYPE" "SIGLEC9 WILD-TYPE" "SIGLEC9 WILD-TYPE" 
       TCGA-67-6216        TCGA-67-6217        TCGA-71-6725        TCGA-73-4658 
"SIGLEC9 WILD-TYPE" "SIGLEC9 WILD-TYPE" "SIGLEC9 WILD-TYPE" "SIGLEC9 WILD-TYPE" 
       TCGA-73-4659        TCGA-73-4662        TCGA-73-4666        TCGA-73-4668 
"SIGLEC9 WILD-TYPE" "SIGLEC9 WILD-TYPE" "SIGLEC9 WILD-TYPE" "SIGLEC9 WILD-TYPE" 
       TCGA-73-4670        TCGA-73-4675        TCGA-73-4676        TCGA-73-4677 
"SIGLEC9 WILD-TYPE" "SIGLEC9 WILD-TYPE" "SIGLEC9 WILD-TYPE" "SIGLEC9 WILD-TYPE" 
       TCGA-91-6828        TCGA-91-6829        TCGA-91-6831        TCGA-91-6835 
"SIGLEC9 WILD-TYPE" "SIGLEC9 WILD-TYPE" "SIGLEC9 WILD-TYPE" "SIGLEC9 WILD-TYPE" 
       TCGA-91-6836 
"SIGLEC9 WILD-TYPE" 
       TCGA-05-4249        TCGA-05-4250        TCGA-05-4382        TCGA-05-4384 
"SIGLEC9 WILD-TYPE" "SIGLEC9 WILD-TYPE" "SIGLEC9 WILD-TYPE" "SIGLEC9 WILD-TYPE" 
       TCGA-05-4390        TCGA-05-4396        TCGA-05-4397        TCGA-05-4398 
"SIGLEC9 WILD-TYPE"   "SIGLEC9 MUTATED" "SIGLEC9 WILD-TYPE"   "SIGLEC9 MUTATED" 
       TCGA-05-4402        TCGA-05-4405        TCGA-05-4415        TCGA-05-4417 
"SIGLEC9 WILD-TYPE" "SIGLEC9 WILD-TYPE" "SIGLEC9 WILD-TYPE" "SIGLEC9 WILD-TYPE" 
       TCGA-05-4418        TCGA-05-4420        TCGA-05-4424        TCGA-05-4426 
"SIGLEC9 WILD-TYPE" "SIGLEC9 WILD-TYPE" "SIGLEC9 WILD-TYPE" "SIGLEC9 WILD-TYPE" 
       TCGA-05-4427        TCGA-05-4430        TCGA-05-4432        TCGA-05-4433 
"SIGLEC9 WILD-TYPE" "SIGLEC9 WILD-TYPE" "SIGLEC9 WILD-TYPE" "SIGLEC9 WILD-TYPE" 
       TCGA-05-4434        TCGA-05-5420        TCGA-05-5423        TCGA-05-5425 
"SIGLEC9 WILD-TYPE" "SIGLEC9 WILD-TYPE" "SIGLEC9 WILD-TYPE" "SIGLEC9 WILD-TYPE" 
       TCGA-05-5429        TCGA-05-5715        TCGA-35-3615        TCGA-35-4122 
"SIGLEC9 WILD-TYPE" "SIGLEC9 WILD-TYPE" "SIGLEC9 WILD-TYPE" "SIGLEC9 WILD-TYPE" 
       TCGA-35-4123        TCGA-35-5375        TCGA-38-4625        TCGA-38-4626 
"SIGLEC9 WILD-TYPE" "SIGLEC9 WILD-TYPE" "SIGLEC9 WILD-TYPE" "SIGLEC9 WILD-TYPE" 
       TCGA-38-4627        TCGA-38-4628        TCGA-38-4629        TCGA-38-4630 
"SIGLEC9 WILD-TYPE" "SIGLEC9 WILD-TYPE" "SIGLEC9 WILD-TYPE"   "SIGLEC9 MUTATED" 
       TCGA-38-4631        TCGA-38-4632        TCGA-38-6178        TCGA-44-2655 
"SIGLEC9 WILD-TYPE" "SIGLEC9 WILD-TYPE" "SIGLEC9 WILD-TYPE" "SIGLEC9 WILD-TYPE" 
       TCGA-44-2656        TCGA-44-2657        TCGA-44-2659        TCGA-44-2661 
  "SIGLEC9 MUTATED" "SIGLEC9 WILD-TYPE" "SIGLEC9 WILD-TYPE" "SIGLEC9 WILD-TYPE" 
       TCGA-44-2662        TCGA-44-2665        TCGA-44-2666        TCGA-44-2668 
"SIGLEC9 WILD-TYPE" "SIGLEC9 WILD-TYPE" "SIGLEC9 WILD-TYPE" "SIGLEC9 WILD-TYPE" 
       TCGA-44-3396        TCGA-44-3398        TCGA-44-3918        TCGA-44-3919 
"SIGLEC9 WILD-TYPE" "SIGLEC9 WILD-TYPE" "SIGLEC9 WILD-TYPE" "SIGLEC9 WILD-TYPE" 
       TCGA-44-4112        TCGA-44-5643        TCGA-44-5645        TCGA-44-6144 
"SIGLEC9 WILD-TYPE" "SIGLEC9 WILD-TYPE" "SIGLEC9 WILD-TYPE" "SIGLEC9 WILD-TYPE" 
       TCGA-44-6145        TCGA-44-6146        TCGA-44-6147        TCGA-44-6148 
"SIGLEC9 WILD-TYPE" "SIGLEC9 WILD-TYPE" "SIGLEC9 WILD-TYPE" "SIGLEC9 WILD-TYPE" 
       TCGA-44-6774        TCGA-44-6775        TCGA-44-6776        TCGA-44-6777 
"SIGLEC9 WILD-TYPE" "SIGLEC9 WILD-TYPE"   "SIGLEC9 MUTATED" "SIGLEC9 WILD-TYPE" 
       TCGA-44-6778        TCGA-44-6779        TCGA-49-4486        TCGA-49-4487 
"SIGLEC9 WILD-TYPE" "SIGLEC9 WILD-TYPE" "SIGLEC9 WILD-TYPE" "SIGLEC9 WILD-TYPE" 
       TCGA-49-4488        TCGA-49-4490        TCGA-49-4494        TCGA-49-4501 
  "SIGLEC9 MUTATED" "SIGLEC9 WILD-TYPE"   "SIGLEC9 MUTATED" "SIGLEC9 WILD-TYPE" 
       TCGA-49-4505        TCGA-49-4506        TCGA-49-4507        TCGA-49-4510 
"SIGLEC9 WILD-TYPE" "SIGLEC9 WILD-TYPE" "SIGLEC9 WILD-TYPE" "SIGLEC9 WILD-TYPE" 
       TCGA-49-4512        TCGA-49-4514        TCGA-49-6742        TCGA-49-6743 
"SIGLEC9 WILD-TYPE" "SIGLEC9 WILD-TYPE" "SIGLEC9 WILD-TYPE" "SIGLEC9 WILD-TYPE" 
       TCGA-49-6744        TCGA-49-6745        TCGA-50-5044        TCGA-50-5045 
"SIGLEC9 WILD-TYPE" "SIGLEC9 WILD-TYPE" "SIGLEC9 WILD-TYPE" "SIGLEC9 WILD-TYPE" 
       TCGA-50-5049        TCGA-50-5051        TCGA-50-5055        TCGA-50-5066 
  "SIGLEC9 MUTATED" "SIGLEC9 WILD-TYPE" "SIGLEC9 WILD-TYPE" "SIGLEC9 WILD-TYPE" 
       TCGA-50-5068        TCGA-50-5072        TCGA-50-5930        TCGA-50-5931 
"SIGLEC9 WILD-TYPE" "SIGLEC9 WILD-TYPE" "SIGLEC9 WILD-TYPE" "SIGLEC9 WILD-TYPE" 
       TCGA-50-5932        TCGA-50-5933        TCGA-50-5935        TCGA-50-5936 
"SIGLEC9 WILD-TYPE" "SIGLEC9 WILD-TYPE" "SIGLEC9 WILD-TYPE" "SIGLEC9 WILD-TYPE" 
       TCGA-50-5939        TCGA-50-5941        TCGA-50-5942        TCGA-50-5944 
"SIGLEC9 WILD-TYPE" "SIGLEC9 WILD-TYPE" "SIGLEC9 WILD-TYPE" "SIGLEC9 WILD-TYPE" 
       TCGA-50-5946        TCGA-50-6590        TCGA-50-6591        TCGA-50-6592 
"SIGLEC9 WILD-TYPE" "SIGLEC9 WILD-TYPE" "SIGLEC9 WILD-TYPE" "SIGLEC9 WILD-TYPE" 
       TCGA-50-6593        TCGA-50-6594        TCGA-50-6595        TCGA-50-6597 
"SIGLEC9 WILD-TYPE" "SIGLEC9 WILD-TYPE" "SIGLEC9 WILD-TYPE" "SIGLEC9 WILD-TYPE" 
       TCGA-55-1592        TCGA-55-1594        TCGA-55-1595        TCGA-55-1596 
"SIGLEC9 WILD-TYPE" "SIGLEC9 WILD-TYPE" "SIGLEC9 WILD-TYPE" "SIGLEC9 WILD-TYPE" 
       TCGA-55-5899        TCGA-55-6543        TCGA-55-6642        TCGA-55-6712 
"SIGLEC9 WILD-TYPE" "SIGLEC9 WILD-TYPE" "SIGLEC9 WILD-TYPE" "SIGLEC9 WILD-TYPE" 
       TCGA-64-1676        TCGA-64-1677        TCGA-64-1678        TCGA-64-1680 
"SIGLEC9 WILD-TYPE"   "SIGLEC9 MUTATED" "SIGLEC9 WILD-TYPE" "SIGLEC9 WILD-TYPE" 
       TCGA-64-5774        TCGA-64-5775        TCGA-64-5778        TCGA-64-5779 
"SIGLEC9 WILD-TYPE" "SIGLEC9 WILD-TYPE" "SIGLEC9 WILD-TYPE" "SIGLEC9 WILD-TYPE" 
       TCGA-64-5781        TCGA-64-5815        TCGA-67-3770        TCGA-67-3771 
"SIGLEC9 WILD-TYPE" "SIGLEC9 WILD-TYPE" "SIGLEC9 WILD-TYPE" "SIGLEC9 WILD-TYPE" 
       TCGA-67-3772        TCGA-67-3773        TCGA-67-3774        TCGA-67-6215 
"SIGLEC9 WILD-TYPE" "SIGLEC9 WILD-TYPE" "SIGLEC9 WILD-TYPE" "SIGLEC9 WILD-TYPE" 
       TCGA-67-6216        TCGA-67-6217        TCGA-71-6725        TCGA-73-4658 
"SIGLEC9 WILD-TYPE" "SIGLEC9 WILD-TYPE" "SIGLEC9 WILD-TYPE" "SIGLEC9 WILD-TYPE" 
       TCGA-73-4659        TCGA-73-4662        TCGA-73-4666        TCGA-73-4668 
"SIGLEC9 WILD-TYPE" "SIGLEC9 WILD-TYPE" "SIGLEC9 WILD-TYPE" "SIGLEC9 WILD-TYPE" 
       TCGA-73-4670        TCGA-73-4675        TCGA-73-4676        TCGA-73-4677 
"SIGLEC9 WILD-TYPE" "SIGLEC9 WILD-TYPE" "SIGLEC9 WILD-TYPE" "SIGLEC9 WILD-TYPE" 
       TCGA-91-6828        TCGA-91-6829        TCGA-91-6831        TCGA-91-6835 
"SIGLEC9 WILD-TYPE" "SIGLEC9 WILD-TYPE" "SIGLEC9 WILD-TYPE" "SIGLEC9 WILD-TYPE" 
       TCGA-91-6836 
"SIGLEC9 WILD-TYPE" 
       TCGA-05-4249        TCGA-05-4250        TCGA-05-4382        TCGA-05-4384 
"SIGLEC9 WILD-TYPE" "SIGLEC9 WILD-TYPE" "SIGLEC9 WILD-TYPE" "SIGLEC9 WILD-TYPE" 
       TCGA-05-4390        TCGA-05-4396        TCGA-05-4397        TCGA-05-4398 
"SIGLEC9 WILD-TYPE"   "SIGLEC9 MUTATED" "SIGLEC9 WILD-TYPE"   "SIGLEC9 MUTATED" 
       TCGA-05-4402        TCGA-05-4405        TCGA-05-4415        TCGA-05-4417 
"SIGLEC9 WILD-TYPE" "SIGLEC9 WILD-TYPE" "SIGLEC9 WILD-TYPE" "SIGLEC9 WILD-TYPE" 
       TCGA-05-4418        TCGA-05-4420        TCGA-05-4424        TCGA-05-4426 
"SIGLEC9 WILD-TYPE" "SIGLEC9 WILD-TYPE" "SIGLEC9 WILD-TYPE" "SIGLEC9 WILD-TYPE" 
       TCGA-05-4427        TCGA-05-4430        TCGA-05-4432        TCGA-05-4433 
"SIGLEC9 WILD-TYPE" "SIGLEC9 WILD-TYPE" "SIGLEC9 WILD-TYPE" "SIGLEC9 WILD-TYPE" 
       TCGA-05-4434        TCGA-05-5420        TCGA-05-5423        TCGA-05-5425 
"SIGLEC9 WILD-TYPE" "SIGLEC9 WILD-TYPE" "SIGLEC9 WILD-TYPE" "SIGLEC9 WILD-TYPE" 
       TCGA-05-5429        TCGA-05-5715        TCGA-35-3615        TCGA-35-4122 
"SIGLEC9 WILD-TYPE" "SIGLEC9 WILD-TYPE" "SIGLEC9 WILD-TYPE" "SIGLEC9 WILD-TYPE" 
       TCGA-35-4123        TCGA-35-5375        TCGA-38-4625        TCGA-38-4626 
"SIGLEC9 WILD-TYPE" "SIGLEC9 WILD-TYPE" "SIGLEC9 WILD-TYPE" "SIGLEC9 WILD-TYPE" 
       TCGA-38-4627        TCGA-38-4628        TCGA-38-4629        TCGA-38-4630 
"SIGLEC9 WILD-TYPE" "SIGLEC9 WILD-TYPE" "SIGLEC9 WILD-TYPE"   "SIGLEC9 MUTATED" 
       TCGA-38-4631        TCGA-38-4632        TCGA-38-6178        TCGA-44-2655 
"SIGLEC9 WILD-TYPE" "SIGLEC9 WILD-TYPE" "SIGLEC9 WILD-TYPE" "SIGLEC9 WILD-TYPE" 
       TCGA-44-2656        TCGA-44-2657        TCGA-44-2659        TCGA-44-2661 
  "SIGLEC9 MUTATED" "SIGLEC9 WILD-TYPE" "SIGLEC9 WILD-TYPE" "SIGLEC9 WILD-TYPE" 
       TCGA-44-2662        TCGA-44-2665        TCGA-44-2666        TCGA-44-2668 
"SIGLEC9 WILD-TYPE" "SIGLEC9 WILD-TYPE" "SIGLEC9 WILD-TYPE" "SIGLEC9 WILD-TYPE" 
       TCGA-44-3396        TCGA-44-3398        TCGA-44-3918        TCGA-44-3919 
"SIGLEC9 WILD-TYPE" "SIGLEC9 WILD-TYPE" "SIGLEC9 WILD-TYPE" "SIGLEC9 WILD-TYPE" 
       TCGA-44-4112        TCGA-44-5643        TCGA-44-5645        TCGA-44-6144 
"SIGLEC9 WILD-TYPE" "SIGLEC9 WILD-TYPE" "SIGLEC9 WILD-TYPE" "SIGLEC9 WILD-TYPE" 
       TCGA-44-6145        TCGA-44-6146        TCGA-44-6147        TCGA-44-6148 
"SIGLEC9 WILD-TYPE" "SIGLEC9 WILD-TYPE" "SIGLEC9 WILD-TYPE" "SIGLEC9 WILD-TYPE" 
       TCGA-44-6774        TCGA-44-6775        TCGA-44-6776        TCGA-44-6777 
"SIGLEC9 WILD-TYPE" "SIGLEC9 WILD-TYPE"   "SIGLEC9 MUTATED" "SIGLEC9 WILD-TYPE" 
       TCGA-44-6778        TCGA-44-6779        TCGA-49-4486        TCGA-49-4487 
"SIGLEC9 WILD-TYPE" "SIGLEC9 WILD-TYPE" "SIGLEC9 WILD-TYPE" "SIGLEC9 WILD-TYPE" 
       TCGA-49-4488        TCGA-49-4490        TCGA-49-4494        TCGA-49-4501 
  "SIGLEC9 MUTATED" "SIGLEC9 WILD-TYPE"   "SIGLEC9 MUTATED" "SIGLEC9 WILD-TYPE" 
       TCGA-49-4505        TCGA-49-4506        TCGA-49-4507        TCGA-49-4510 
"SIGLEC9 WILD-TYPE" "SIGLEC9 WILD-TYPE" "SIGLEC9 WILD-TYPE" "SIGLEC9 WILD-TYPE" 
       TCGA-49-4512        TCGA-49-4514        TCGA-49-6742        TCGA-49-6743 
"SIGLEC9 WILD-TYPE" "SIGLEC9 WILD-TYPE" "SIGLEC9 WILD-TYPE" "SIGLEC9 WILD-TYPE" 
       TCGA-49-6744        TCGA-49-6745        TCGA-50-5044        TCGA-50-5045 
"SIGLEC9 WILD-TYPE" "SIGLEC9 WILD-TYPE" "SIGLEC9 WILD-TYPE" "SIGLEC9 WILD-TYPE" 
       TCGA-50-5049        TCGA-50-5051        TCGA-50-5055        TCGA-50-5066 
  "SIGLEC9 MUTATED" "SIGLEC9 WILD-TYPE" "SIGLEC9 WILD-TYPE" "SIGLEC9 WILD-TYPE" 
       TCGA-50-5068        TCGA-50-5072        TCGA-50-5930        TCGA-50-5931 
"SIGLEC9 WILD-TYPE" "SIGLEC9 WILD-TYPE" "SIGLEC9 WILD-TYPE" "SIGLEC9 WILD-TYPE" 
       TCGA-50-5932        TCGA-50-5933        TCGA-50-5935        TCGA-50-5936 
"SIGLEC9 WILD-TYPE" "SIGLEC9 WILD-TYPE" "SIGLEC9 WILD-TYPE" "SIGLEC9 WILD-TYPE" 
       TCGA-50-5939        TCGA-50-5941        TCGA-50-5942        TCGA-50-5944 
"SIGLEC9 WILD-TYPE" "SIGLEC9 WILD-TYPE" "SIGLEC9 WILD-TYPE" "SIGLEC9 WILD-TYPE" 
       TCGA-50-5946        TCGA-50-6590        TCGA-50-6591        TCGA-50-6592 
"SIGLEC9 WILD-TYPE" "SIGLEC9 WILD-TYPE" "SIGLEC9 WILD-TYPE" "SIGLEC9 WILD-TYPE" 
       TCGA-50-6593        TCGA-50-6594        TCGA-50-6595        TCGA-50-6597 
"SIGLEC9 WILD-TYPE" "SIGLEC9 WILD-TYPE" "SIGLEC9 WILD-TYPE" "SIGLEC9 WILD-TYPE" 
       TCGA-55-1592        TCGA-55-1594        TCGA-55-1595        TCGA-55-1596 
"SIGLEC9 WILD-TYPE" "SIGLEC9 WILD-TYPE" "SIGLEC9 WILD-TYPE" "SIGLEC9 WILD-TYPE" 
       TCGA-55-5899        TCGA-55-6543        TCGA-55-6642        TCGA-55-6712 
"SIGLEC9 WILD-TYPE" "SIGLEC9 WILD-TYPE" "SIGLEC9 WILD-TYPE" "SIGLEC9 WILD-TYPE" 
       TCGA-64-1676        TCGA-64-1677        TCGA-64-1678        TCGA-64-1680 
"SIGLEC9 WILD-TYPE"   "SIGLEC9 MUTATED" "SIGLEC9 WILD-TYPE" "SIGLEC9 WILD-TYPE" 
       TCGA-64-5774        TCGA-64-5775        TCGA-64-5778        TCGA-64-5779 
"SIGLEC9 WILD-TYPE" "SIGLEC9 WILD-TYPE" "SIGLEC9 WILD-TYPE" "SIGLEC9 WILD-TYPE" 
       TCGA-64-5781        TCGA-64-5815        TCGA-67-3770        TCGA-67-3771 
"SIGLEC9 WILD-TYPE" "SIGLEC9 WILD-TYPE" "SIGLEC9 WILD-TYPE" "SIGLEC9 WILD-TYPE" 
       TCGA-67-3772        TCGA-67-3773        TCGA-67-3774        TCGA-67-6215 
"SIGLEC9 WILD-TYPE" "SIGLEC9 WILD-TYPE" "SIGLEC9 WILD-TYPE" "SIGLEC9 WILD-TYPE" 
       TCGA-67-6216        TCGA-67-6217        TCGA-71-6725        TCGA-73-4658 
"SIGLEC9 WILD-TYPE" "SIGLEC9 WILD-TYPE" "SIGLEC9 WILD-TYPE" "SIGLEC9 WILD-TYPE" 
       TCGA-73-4659        TCGA-73-4662        TCGA-73-4666        TCGA-73-4668 
"SIGLEC9 WILD-TYPE" "SIGLEC9 WILD-TYPE" "SIGLEC9 WILD-TYPE" "SIGLEC9 WILD-TYPE" 
       TCGA-73-4670        TCGA-73-4675        TCGA-73-4676        TCGA-73-4677 
"SIGLEC9 WILD-TYPE" "SIGLEC9 WILD-TYPE" "SIGLEC9 WILD-TYPE" "SIGLEC9 WILD-TYPE" 
       TCGA-91-6828        TCGA-91-6829        TCGA-91-6831        TCGA-91-6835 
"SIGLEC9 WILD-TYPE" "SIGLEC9 WILD-TYPE" "SIGLEC9 WILD-TYPE" "SIGLEC9 WILD-TYPE" 
       TCGA-91-6836 
"SIGLEC9 WILD-TYPE" 
[1] "hr=" "1.1"
D251V2, continuous
D251V3, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  SIGLEC9 MUTATED      6    4
  SIGLEC9 WILD-TYPE   87   75
        clus
vv       SIGLEC9 MUTATED SIGLEC9 WILD-TYPE
  FEMALE               6                87
  MALE                 4                75
D251V4, continuous
[1] "Remove cluster labels:" "SIGLEC9 MUTATED"       
clus
  SIGLEC9 MUTATED SIGLEC9 WILD-TYPE 
                1                11 
       TCGA-35-4122        TCGA-35-4123        TCGA-35-5375        TCGA-64-5778 
"SIGLEC9 WILD-TYPE" "SIGLEC9 WILD-TYPE" "SIGLEC9 WILD-TYPE" "SIGLEC9 WILD-TYPE" 
       TCGA-71-6725        TCGA-73-4659        TCGA-73-4662        TCGA-73-4666 
"SIGLEC9 WILD-TYPE" "SIGLEC9 WILD-TYPE" "SIGLEC9 WILD-TYPE" "SIGLEC9 WILD-TYPE" 
       TCGA-73-4668        TCGA-73-4676        TCGA-75-5122 
"SIGLEC9 WILD-TYPE" "SIGLEC9 WILD-TYPE" "SIGLEC9 WILD-TYPE" 
D251V5, multiclass
D251V6, multiclass
    clus
vv   SIGLEC9 MUTATED SIGLEC9 WILD-TYPE
  T1               2                39
  T2               4               104
  T3               2                12
  T4               2                 6
D251V7, multiclass
       clus
vv      SIGLEC9 MUTATED SIGLEC9 WILD-TYPE
  N0                  5                90
  N1                  1                36
  N2+N3               4                31
D251V8, multiclass
    clus
vv   SIGLEC9 MUTATED SIGLEC9 WILD-TYPE
  M0               7               130
  M1               0                 9
  MX               2                20
D251V9, multiclass
     clus
vv    SIGLEC9 MUTATED SIGLEC9 WILD-TYPE
  I                 5                83
  II                0                33
  III               5                34
  IV                0                 9
D251V10, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  SIGLEC9 MUTATED      1    9
  SIGLEC9 WILD-TYPE   15  147
     clus
vv    SIGLEC9 MUTATED SIGLEC9 WILD-TYPE
  NO                1                15
  YES               9               147
D251V11, continuous
D251V12, continuous
D251V13, multiclass
                                             clus
vv                                            SIGLEC9 MUTATED SIGLEC9 WILD-TYPE
  CURRENT REFORMED SMOKER FOR < OR = 15 YEARS               3                59
  CURRENT REFORMED SMOKER FOR > 15 YEARS                    3                43
  CURRENT SMOKER                                            2                26
  LIFELONG NON-SMOKER                                       1                23
D251V14, continuous

Clustering(252) Variable = OR11H4 MUTATION ANALYSIS
D252V1, survival
                  sevent
clus2               0  1
  OR11H4 MUTATED    2  1
  OR11H4 WILD-TYPE 97 49
  OR11H4 MUTATED OR11H4 WILD-TYPE 
               3              146 
  OR11H4 MUTATED OR11H4 WILD-TYPE 
               1               49 
$`OR11H4 MUTATED`
TCGA-38-4625 TCGA-44-2668 TCGA-50-5933 
       47.61         8.09        77.88 

$`OR11H4 WILD-TYPE`
TCGA-05-4249 TCGA-05-4250 TCGA-05-4382 TCGA-05-4384 TCGA-05-4390 TCGA-05-4396 
       38.07         3.98        19.92        14.01        37.02         9.96 
TCGA-05-4397 TCGA-05-4398 TCGA-05-4402 TCGA-05-4405 TCGA-05-4415 TCGA-05-4417 
       24.03        47.05         8.02        20.05         2.96        14.93 
TCGA-05-4418 TCGA-05-4420 TCGA-05-4424 TCGA-05-4426 TCGA-05-4427 TCGA-05-4430 
        8.98        29.95        30.02        26.01        26.01        25.02 
TCGA-05-4432 TCGA-05-4433 TCGA-05-4434 TCGA-05-5420 TCGA-05-5423 TCGA-05-5425 
       25.02        24.00        15.02         1.02         4.96         2.96 
TCGA-05-5429 TCGA-05-5715 TCGA-35-3615 TCGA-35-4122 TCGA-35-4123 TCGA-35-5375 
        0.99         2.04         0.46         7.36         5.95         8.68 
TCGA-38-4626 TCGA-38-4627 TCGA-38-4628 TCGA-38-4629 TCGA-38-4630 TCGA-38-4631 
       85.32        37.71        49.02        28.37        35.28        11.64 
TCGA-38-4632 TCGA-38-6178 TCGA-44-2655 TCGA-44-2656 TCGA-44-2657 TCGA-44-2659 
       44.61         5.19        18.87        19.10        13.15        17.39 
TCGA-44-2661 TCGA-44-2662 TCGA-44-2665 TCGA-44-2666 TCGA-44-3396 TCGA-44-3398 
        3.39        15.78        13.15         3.19        10.22         8.32 
TCGA-44-3918 TCGA-44-3919 TCGA-44-4112 TCGA-44-5643 TCGA-44-5645 TCGA-44-6144 
        6.44         6.21         4.60         3.48         6.84         0.30 
TCGA-44-6145 TCGA-44-6146 TCGA-44-6147 TCGA-44-6148 TCGA-44-6774 TCGA-44-6775 
        3.35         9.93         7.76         3.12         5.42         2.70 
TCGA-44-6776 TCGA-44-6777 TCGA-44-6778 TCGA-44-6779 TCGA-49-4486 TCGA-49-4487 
       63.72        32.45        36.49        16.41        76.21        28.11 
TCGA-49-4488 TCGA-49-4490 TCGA-49-4494 TCGA-49-4501 TCGA-49-4505 TCGA-49-4506 
       28.57        12.66        35.54        46.72        14.07        32.84 
TCGA-49-4507 TCGA-49-4510 TCGA-49-4512 TCGA-49-4514 TCGA-49-6742 TCGA-49-6743 
        8.81        29.46        29.75        43.20        15.02        12.13 
TCGA-49-6744 TCGA-49-6745 TCGA-50-5044 TCGA-50-5045 TCGA-50-5049 TCGA-50-5051 
       12.99         4.93        20.48        71.47        48.82        14.96 
TCGA-50-5055 TCGA-50-5066 TCGA-50-5068 TCGA-50-5072 TCGA-50-5930 TCGA-50-5931 
       25.81         9.76        49.28         8.05         9.27         8.78 
TCGA-50-5932 TCGA-50-5935 TCGA-50-5936 TCGA-50-5939 TCGA-50-5941 TCGA-50-5942 
       35.87        21.47         8.45        15.12         9.37         4.44 
TCGA-50-5944 TCGA-50-5946 TCGA-50-6590 TCGA-50-6591 TCGA-50-6592 TCGA-50-6593 
       12.26        11.47        42.31         3.88        25.51        11.05 
TCGA-50-6594 TCGA-50-6595 TCGA-50-6597 TCGA-55-1592 TCGA-55-1594 TCGA-55-1595 
       12.16         6.21        33.37        23.05        38.73        48.62 
TCGA-55-1596 TCGA-55-5899 TCGA-55-6543 TCGA-55-6642 TCGA-55-6712 TCGA-64-1676 
       45.17         2.86         0.07        32.61         0.79        56.81 
TCGA-64-1677 TCGA-64-1678 TCGA-64-1680 TCGA-64-5774 TCGA-64-5775 TCGA-64-5778 
       20.65        39.09        37.02        83.84         0.10        30.44 
TCGA-64-5779 TCGA-64-5781 TCGA-64-5815 TCGA-67-3770 TCGA-67-3771 TCGA-67-3772 
       16.67        39.52         7.33         0.99         1.97         0.59 
TCGA-67-3773 TCGA-67-3774 TCGA-67-6215 TCGA-67-6216 TCGA-67-6217 TCGA-71-6725 
        2.04         0.59         0.89         0.69        13.87         2.01 
TCGA-73-4658 TCGA-73-4659 TCGA-73-4662 TCGA-73-4666 TCGA-73-4668 TCGA-73-4670 
       52.57        23.38        29.95        20.28        15.35         0.46 
TCGA-73-4675 TCGA-73-4676 TCGA-73-4677 TCGA-91-6828 TCGA-91-6829 TCGA-91-6831 
        1.32         4.01         1.25         1.22        41.33         1.28 
TCGA-91-6835 TCGA-91-6836 
        1.15         0.36 

  OR11H4 MUTATED OR11H4 WILD-TYPE 
            8.09             0.07 
  OR11H4 MUTATED OR11H4 WILD-TYPE 
           77.88            85.32 
  OR11H4 MUTATED OR11H4 WILD-TYPE 
           47.61            13.51 
[1] "8.1 - 77.9 (47.6)" "0.1 - 85.3 (13.5)"
      TCGA-05-4249       TCGA-05-4250       TCGA-05-4382       TCGA-05-4384 
"OR11H4 WILD-TYPE" "OR11H4 WILD-TYPE" "OR11H4 WILD-TYPE" "OR11H4 WILD-TYPE" 
      TCGA-05-4390       TCGA-05-4396       TCGA-05-4397       TCGA-05-4398 
"OR11H4 WILD-TYPE" "OR11H4 WILD-TYPE" "OR11H4 WILD-TYPE" "OR11H4 WILD-TYPE" 
      TCGA-05-4402       TCGA-05-4405       TCGA-05-4415       TCGA-05-4417 
"OR11H4 WILD-TYPE" "OR11H4 WILD-TYPE" "OR11H4 WILD-TYPE" "OR11H4 WILD-TYPE" 
      TCGA-05-4418       TCGA-05-4420       TCGA-05-4424       TCGA-05-4426 
"OR11H4 WILD-TYPE" "OR11H4 WILD-TYPE" "OR11H4 WILD-TYPE" "OR11H4 WILD-TYPE" 
      TCGA-05-4427       TCGA-05-4430       TCGA-05-4432       TCGA-05-4433 
"OR11H4 WILD-TYPE" "OR11H4 WILD-TYPE" "OR11H4 WILD-TYPE" "OR11H4 WILD-TYPE" 
      TCGA-05-4434       TCGA-05-5420       TCGA-05-5423       TCGA-05-5425 
"OR11H4 WILD-TYPE" "OR11H4 WILD-TYPE" "OR11H4 WILD-TYPE" "OR11H4 WILD-TYPE" 
      TCGA-05-5429       TCGA-05-5715       TCGA-35-3615       TCGA-35-4122 
"OR11H4 WILD-TYPE" "OR11H4 WILD-TYPE" "OR11H4 WILD-TYPE" "OR11H4 WILD-TYPE" 
      TCGA-35-4123       TCGA-35-5375       TCGA-38-4625       TCGA-38-4626 
"OR11H4 WILD-TYPE" "OR11H4 WILD-TYPE"   "OR11H4 MUTATED" "OR11H4 WILD-TYPE" 
      TCGA-38-4627       TCGA-38-4628       TCGA-38-4629       TCGA-38-4630 
"OR11H4 WILD-TYPE" "OR11H4 WILD-TYPE" "OR11H4 WILD-TYPE" "OR11H4 WILD-TYPE" 
      TCGA-38-4631       TCGA-38-4632       TCGA-38-6178       TCGA-44-2655 
"OR11H4 WILD-TYPE" "OR11H4 WILD-TYPE" "OR11H4 WILD-TYPE" "OR11H4 WILD-TYPE" 
      TCGA-44-2656       TCGA-44-2657       TCGA-44-2659       TCGA-44-2661 
"OR11H4 WILD-TYPE" "OR11H4 WILD-TYPE" "OR11H4 WILD-TYPE" "OR11H4 WILD-TYPE" 
      TCGA-44-2662       TCGA-44-2665       TCGA-44-2666       TCGA-44-2668 
"OR11H4 WILD-TYPE" "OR11H4 WILD-TYPE" "OR11H4 WILD-TYPE"   "OR11H4 MUTATED" 
      TCGA-44-3396       TCGA-44-3398       TCGA-44-3918       TCGA-44-3919 
"OR11H4 WILD-TYPE" "OR11H4 WILD-TYPE" "OR11H4 WILD-TYPE" "OR11H4 WILD-TYPE" 
      TCGA-44-4112       TCGA-44-5643       TCGA-44-5645       TCGA-44-6144 
"OR11H4 WILD-TYPE" "OR11H4 WILD-TYPE" "OR11H4 WILD-TYPE" "OR11H4 WILD-TYPE" 
      TCGA-44-6145       TCGA-44-6146       TCGA-44-6147       TCGA-44-6148 
"OR11H4 WILD-TYPE" "OR11H4 WILD-TYPE" "OR11H4 WILD-TYPE" "OR11H4 WILD-TYPE" 
      TCGA-44-6774       TCGA-44-6775       TCGA-44-6776       TCGA-44-6777 
"OR11H4 WILD-TYPE" "OR11H4 WILD-TYPE" "OR11H4 WILD-TYPE" "OR11H4 WILD-TYPE" 
      TCGA-44-6778       TCGA-44-6779       TCGA-49-4486       TCGA-49-4487 
"OR11H4 WILD-TYPE" "OR11H4 WILD-TYPE" "OR11H4 WILD-TYPE" "OR11H4 WILD-TYPE" 
      TCGA-49-4488       TCGA-49-4490       TCGA-49-4494       TCGA-49-4501 
"OR11H4 WILD-TYPE" "OR11H4 WILD-TYPE" "OR11H4 WILD-TYPE" "OR11H4 WILD-TYPE" 
      TCGA-49-4505       TCGA-49-4506       TCGA-49-4507       TCGA-49-4510 
"OR11H4 WILD-TYPE" "OR11H4 WILD-TYPE" "OR11H4 WILD-TYPE" "OR11H4 WILD-TYPE" 
      TCGA-49-4512       TCGA-49-4514       TCGA-49-6742       TCGA-49-6743 
"OR11H4 WILD-TYPE" "OR11H4 WILD-TYPE" "OR11H4 WILD-TYPE" "OR11H4 WILD-TYPE" 
      TCGA-49-6744       TCGA-49-6745       TCGA-50-5044       TCGA-50-5045 
"OR11H4 WILD-TYPE" "OR11H4 WILD-TYPE" "OR11H4 WILD-TYPE" "OR11H4 WILD-TYPE" 
      TCGA-50-5049       TCGA-50-5051       TCGA-50-5055       TCGA-50-5066 
"OR11H4 WILD-TYPE" "OR11H4 WILD-TYPE" "OR11H4 WILD-TYPE" "OR11H4 WILD-TYPE" 
      TCGA-50-5068       TCGA-50-5072       TCGA-50-5930       TCGA-50-5931 
"OR11H4 WILD-TYPE" "OR11H4 WILD-TYPE" "OR11H4 WILD-TYPE" "OR11H4 WILD-TYPE" 
      TCGA-50-5932       TCGA-50-5933       TCGA-50-5935       TCGA-50-5936 
"OR11H4 WILD-TYPE"   "OR11H4 MUTATED" "OR11H4 WILD-TYPE" "OR11H4 WILD-TYPE" 
      TCGA-50-5939       TCGA-50-5941       TCGA-50-5942       TCGA-50-5944 
"OR11H4 WILD-TYPE" "OR11H4 WILD-TYPE" "OR11H4 WILD-TYPE" "OR11H4 WILD-TYPE" 
      TCGA-50-5946       TCGA-50-6590       TCGA-50-6591       TCGA-50-6592 
"OR11H4 WILD-TYPE" "OR11H4 WILD-TYPE" "OR11H4 WILD-TYPE" "OR11H4 WILD-TYPE" 
      TCGA-50-6593       TCGA-50-6594       TCGA-50-6595       TCGA-50-6597 
"OR11H4 WILD-TYPE" "OR11H4 WILD-TYPE" "OR11H4 WILD-TYPE" "OR11H4 WILD-TYPE" 
      TCGA-55-1592       TCGA-55-1594       TCGA-55-1595       TCGA-55-1596 
"OR11H4 WILD-TYPE" "OR11H4 WILD-TYPE" "OR11H4 WILD-TYPE" "OR11H4 WILD-TYPE" 
      TCGA-55-5899       TCGA-55-6543       TCGA-55-6642       TCGA-55-6712 
"OR11H4 WILD-TYPE" "OR11H4 WILD-TYPE" "OR11H4 WILD-TYPE" "OR11H4 WILD-TYPE" 
      TCGA-64-1676       TCGA-64-1677       TCGA-64-1678       TCGA-64-1680 
"OR11H4 WILD-TYPE" "OR11H4 WILD-TYPE" "OR11H4 WILD-TYPE" "OR11H4 WILD-TYPE" 
      TCGA-64-5774       TCGA-64-5775       TCGA-64-5778       TCGA-64-5779 
"OR11H4 WILD-TYPE" "OR11H4 WILD-TYPE" "OR11H4 WILD-TYPE" "OR11H4 WILD-TYPE" 
      TCGA-64-5781       TCGA-64-5815       TCGA-67-3770       TCGA-67-3771 
"OR11H4 WILD-TYPE" "OR11H4 WILD-TYPE" "OR11H4 WILD-TYPE" "OR11H4 WILD-TYPE" 
      TCGA-67-3772       TCGA-67-3773       TCGA-67-3774       TCGA-67-6215 
"OR11H4 WILD-TYPE" "OR11H4 WILD-TYPE" "OR11H4 WILD-TYPE" "OR11H4 WILD-TYPE" 
      TCGA-67-6216       TCGA-67-6217       TCGA-71-6725       TCGA-73-4658 
"OR11H4 WILD-TYPE" "OR11H4 WILD-TYPE" "OR11H4 WILD-TYPE" "OR11H4 WILD-TYPE" 
      TCGA-73-4659       TCGA-73-4662       TCGA-73-4666       TCGA-73-4668 
"OR11H4 WILD-TYPE" "OR11H4 WILD-TYPE" "OR11H4 WILD-TYPE" "OR11H4 WILD-TYPE" 
      TCGA-73-4670       TCGA-73-4675       TCGA-73-4676       TCGA-73-4677 
"OR11H4 WILD-TYPE" "OR11H4 WILD-TYPE" "OR11H4 WILD-TYPE" "OR11H4 WILD-TYPE" 
      TCGA-91-6828       TCGA-91-6829       TCGA-91-6831       TCGA-91-6835 
"OR11H4 WILD-TYPE" "OR11H4 WILD-TYPE" "OR11H4 WILD-TYPE" "OR11H4 WILD-TYPE" 
      TCGA-91-6836 
"OR11H4 WILD-TYPE" 
      TCGA-05-4249       TCGA-05-4250       TCGA-05-4382       TCGA-05-4384 
"OR11H4 WILD-TYPE" "OR11H4 WILD-TYPE" "OR11H4 WILD-TYPE" "OR11H4 WILD-TYPE" 
      TCGA-05-4390       TCGA-05-4396       TCGA-05-4397       TCGA-05-4398 
"OR11H4 WILD-TYPE" "OR11H4 WILD-TYPE" "OR11H4 WILD-TYPE" "OR11H4 WILD-TYPE" 
      TCGA-05-4402       TCGA-05-4405       TCGA-05-4415       TCGA-05-4417 
"OR11H4 WILD-TYPE" "OR11H4 WILD-TYPE" "OR11H4 WILD-TYPE" "OR11H4 WILD-TYPE" 
      TCGA-05-4418       TCGA-05-4420       TCGA-05-4424       TCGA-05-4426 
"OR11H4 WILD-TYPE" "OR11H4 WILD-TYPE" "OR11H4 WILD-TYPE" "OR11H4 WILD-TYPE" 
      TCGA-05-4427       TCGA-05-4430       TCGA-05-4432       TCGA-05-4433 
"OR11H4 WILD-TYPE" "OR11H4 WILD-TYPE" "OR11H4 WILD-TYPE" "OR11H4 WILD-TYPE" 
      TCGA-05-4434       TCGA-05-5420       TCGA-05-5423       TCGA-05-5425 
"OR11H4 WILD-TYPE" "OR11H4 WILD-TYPE" "OR11H4 WILD-TYPE" "OR11H4 WILD-TYPE" 
      TCGA-05-5429       TCGA-05-5715       TCGA-35-3615       TCGA-35-4122 
"OR11H4 WILD-TYPE" "OR11H4 WILD-TYPE" "OR11H4 WILD-TYPE" "OR11H4 WILD-TYPE" 
      TCGA-35-4123       TCGA-35-5375       TCGA-38-4625       TCGA-38-4626 
"OR11H4 WILD-TYPE" "OR11H4 WILD-TYPE"   "OR11H4 MUTATED" "OR11H4 WILD-TYPE" 
      TCGA-38-4627       TCGA-38-4628       TCGA-38-4629       TCGA-38-4630 
"OR11H4 WILD-TYPE" "OR11H4 WILD-TYPE" "OR11H4 WILD-TYPE" "OR11H4 WILD-TYPE" 
      TCGA-38-4631       TCGA-38-4632       TCGA-38-6178       TCGA-44-2655 
"OR11H4 WILD-TYPE" "OR11H4 WILD-TYPE" "OR11H4 WILD-TYPE" "OR11H4 WILD-TYPE" 
      TCGA-44-2656       TCGA-44-2657       TCGA-44-2659       TCGA-44-2661 
"OR11H4 WILD-TYPE" "OR11H4 WILD-TYPE" "OR11H4 WILD-TYPE" "OR11H4 WILD-TYPE" 
      TCGA-44-2662       TCGA-44-2665       TCGA-44-2666       TCGA-44-2668 
"OR11H4 WILD-TYPE" "OR11H4 WILD-TYPE" "OR11H4 WILD-TYPE"   "OR11H4 MUTATED" 
      TCGA-44-3396       TCGA-44-3398       TCGA-44-3918       TCGA-44-3919 
"OR11H4 WILD-TYPE" "OR11H4 WILD-TYPE" "OR11H4 WILD-TYPE" "OR11H4 WILD-TYPE" 
      TCGA-44-4112       TCGA-44-5643       TCGA-44-5645       TCGA-44-6144 
"OR11H4 WILD-TYPE" "OR11H4 WILD-TYPE" "OR11H4 WILD-TYPE" "OR11H4 WILD-TYPE" 
      TCGA-44-6145       TCGA-44-6146       TCGA-44-6147       TCGA-44-6148 
"OR11H4 WILD-TYPE" "OR11H4 WILD-TYPE" "OR11H4 WILD-TYPE" "OR11H4 WILD-TYPE" 
      TCGA-44-6774       TCGA-44-6775       TCGA-44-6776       TCGA-44-6777 
"OR11H4 WILD-TYPE" "OR11H4 WILD-TYPE" "OR11H4 WILD-TYPE" "OR11H4 WILD-TYPE" 
      TCGA-44-6778       TCGA-44-6779       TCGA-49-4486       TCGA-49-4487 
"OR11H4 WILD-TYPE" "OR11H4 WILD-TYPE" "OR11H4 WILD-TYPE" "OR11H4 WILD-TYPE" 
      TCGA-49-4488       TCGA-49-4490       TCGA-49-4494       TCGA-49-4501 
"OR11H4 WILD-TYPE" "OR11H4 WILD-TYPE" "OR11H4 WILD-TYPE" "OR11H4 WILD-TYPE" 
      TCGA-49-4505       TCGA-49-4506       TCGA-49-4507       TCGA-49-4510 
"OR11H4 WILD-TYPE" "OR11H4 WILD-TYPE" "OR11H4 WILD-TYPE" "OR11H4 WILD-TYPE" 
      TCGA-49-4512       TCGA-49-4514       TCGA-49-6742       TCGA-49-6743 
"OR11H4 WILD-TYPE" "OR11H4 WILD-TYPE" "OR11H4 WILD-TYPE" "OR11H4 WILD-TYPE" 
      TCGA-49-6744       TCGA-49-6745       TCGA-50-5044       TCGA-50-5045 
"OR11H4 WILD-TYPE" "OR11H4 WILD-TYPE" "OR11H4 WILD-TYPE" "OR11H4 WILD-TYPE" 
      TCGA-50-5049       TCGA-50-5051       TCGA-50-5055       TCGA-50-5066 
"OR11H4 WILD-TYPE" "OR11H4 WILD-TYPE" "OR11H4 WILD-TYPE" "OR11H4 WILD-TYPE" 
      TCGA-50-5068       TCGA-50-5072       TCGA-50-5930       TCGA-50-5931 
"OR11H4 WILD-TYPE" "OR11H4 WILD-TYPE" "OR11H4 WILD-TYPE" "OR11H4 WILD-TYPE" 
      TCGA-50-5932       TCGA-50-5933       TCGA-50-5935       TCGA-50-5936 
"OR11H4 WILD-TYPE"   "OR11H4 MUTATED" "OR11H4 WILD-TYPE" "OR11H4 WILD-TYPE" 
      TCGA-50-5939       TCGA-50-5941       TCGA-50-5942       TCGA-50-5944 
"OR11H4 WILD-TYPE" "OR11H4 WILD-TYPE" "OR11H4 WILD-TYPE" "OR11H4 WILD-TYPE" 
      TCGA-50-5946       TCGA-50-6590       TCGA-50-6591       TCGA-50-6592 
"OR11H4 WILD-TYPE" "OR11H4 WILD-TYPE" "OR11H4 WILD-TYPE" "OR11H4 WILD-TYPE" 
      TCGA-50-6593       TCGA-50-6594       TCGA-50-6595       TCGA-50-6597 
"OR11H4 WILD-TYPE" "OR11H4 WILD-TYPE" "OR11H4 WILD-TYPE" "OR11H4 WILD-TYPE" 
      TCGA-55-1592       TCGA-55-1594       TCGA-55-1595       TCGA-55-1596 
"OR11H4 WILD-TYPE" "OR11H4 WILD-TYPE" "OR11H4 WILD-TYPE" "OR11H4 WILD-TYPE" 
      TCGA-55-5899       TCGA-55-6543       TCGA-55-6642       TCGA-55-6712 
"OR11H4 WILD-TYPE" "OR11H4 WILD-TYPE" "OR11H4 WILD-TYPE" "OR11H4 WILD-TYPE" 
      TCGA-64-1676       TCGA-64-1677       TCGA-64-1678       TCGA-64-1680 
"OR11H4 WILD-TYPE" "OR11H4 WILD-TYPE" "OR11H4 WILD-TYPE" "OR11H4 WILD-TYPE" 
      TCGA-64-5774       TCGA-64-5775       TCGA-64-5778       TCGA-64-5779 
"OR11H4 WILD-TYPE" "OR11H4 WILD-TYPE" "OR11H4 WILD-TYPE" "OR11H4 WILD-TYPE" 
      TCGA-64-5781       TCGA-64-5815       TCGA-67-3770       TCGA-67-3771 
"OR11H4 WILD-TYPE" "OR11H4 WILD-TYPE" "OR11H4 WILD-TYPE" "OR11H4 WILD-TYPE" 
      TCGA-67-3772       TCGA-67-3773       TCGA-67-3774       TCGA-67-6215 
"OR11H4 WILD-TYPE" "OR11H4 WILD-TYPE" "OR11H4 WILD-TYPE" "OR11H4 WILD-TYPE" 
      TCGA-67-6216       TCGA-67-6217       TCGA-71-6725       TCGA-73-4658 
"OR11H4 WILD-TYPE" "OR11H4 WILD-TYPE" "OR11H4 WILD-TYPE" "OR11H4 WILD-TYPE" 
      TCGA-73-4659       TCGA-73-4662       TCGA-73-4666       TCGA-73-4668 
"OR11H4 WILD-TYPE" "OR11H4 WILD-TYPE" "OR11H4 WILD-TYPE" "OR11H4 WILD-TYPE" 
      TCGA-73-4670       TCGA-73-4675       TCGA-73-4676       TCGA-73-4677 
"OR11H4 WILD-TYPE" "OR11H4 WILD-TYPE" "OR11H4 WILD-TYPE" "OR11H4 WILD-TYPE" 
      TCGA-91-6828       TCGA-91-6829       TCGA-91-6831       TCGA-91-6835 
"OR11H4 WILD-TYPE" "OR11H4 WILD-TYPE" "OR11H4 WILD-TYPE" "OR11H4 WILD-TYPE" 
      TCGA-91-6836 
"OR11H4 WILD-TYPE" 
      TCGA-05-4249       TCGA-05-4250       TCGA-05-4382       TCGA-05-4384 
"OR11H4 WILD-TYPE" "OR11H4 WILD-TYPE" "OR11H4 WILD-TYPE" "OR11H4 WILD-TYPE" 
      TCGA-05-4390       TCGA-05-4396       TCGA-05-4397       TCGA-05-4398 
"OR11H4 WILD-TYPE" "OR11H4 WILD-TYPE" "OR11H4 WILD-TYPE" "OR11H4 WILD-TYPE" 
      TCGA-05-4402       TCGA-05-4405       TCGA-05-4415       TCGA-05-4417 
"OR11H4 WILD-TYPE" "OR11H4 WILD-TYPE" "OR11H4 WILD-TYPE" "OR11H4 WILD-TYPE" 
      TCGA-05-4418       TCGA-05-4420       TCGA-05-4424       TCGA-05-4426 
"OR11H4 WILD-TYPE" "OR11H4 WILD-TYPE" "OR11H4 WILD-TYPE" "OR11H4 WILD-TYPE" 
      TCGA-05-4427       TCGA-05-4430       TCGA-05-4432       TCGA-05-4433 
"OR11H4 WILD-TYPE" "OR11H4 WILD-TYPE" "OR11H4 WILD-TYPE" "OR11H4 WILD-TYPE" 
      TCGA-05-4434       TCGA-05-5420       TCGA-05-5423       TCGA-05-5425 
"OR11H4 WILD-TYPE" "OR11H4 WILD-TYPE" "OR11H4 WILD-TYPE" "OR11H4 WILD-TYPE" 
      TCGA-05-5429       TCGA-05-5715       TCGA-35-3615       TCGA-35-4122 
"OR11H4 WILD-TYPE" "OR11H4 WILD-TYPE" "OR11H4 WILD-TYPE" "OR11H4 WILD-TYPE" 
      TCGA-35-4123       TCGA-35-5375       TCGA-38-4625       TCGA-38-4626 
"OR11H4 WILD-TYPE" "OR11H4 WILD-TYPE"   "OR11H4 MUTATED" "OR11H4 WILD-TYPE" 
      TCGA-38-4627       TCGA-38-4628       TCGA-38-4629       TCGA-38-4630 
"OR11H4 WILD-TYPE" "OR11H4 WILD-TYPE" "OR11H4 WILD-TYPE" "OR11H4 WILD-TYPE" 
      TCGA-38-4631       TCGA-38-4632       TCGA-38-6178       TCGA-44-2655 
"OR11H4 WILD-TYPE" "OR11H4 WILD-TYPE" "OR11H4 WILD-TYPE" "OR11H4 WILD-TYPE" 
      TCGA-44-2656       TCGA-44-2657       TCGA-44-2659       TCGA-44-2661 
"OR11H4 WILD-TYPE" "OR11H4 WILD-TYPE" "OR11H4 WILD-TYPE" "OR11H4 WILD-TYPE" 
      TCGA-44-2662       TCGA-44-2665       TCGA-44-2666       TCGA-44-2668 
"OR11H4 WILD-TYPE" "OR11H4 WILD-TYPE" "OR11H4 WILD-TYPE"   "OR11H4 MUTATED" 
      TCGA-44-3396       TCGA-44-3398       TCGA-44-3918       TCGA-44-3919 
"OR11H4 WILD-TYPE" "OR11H4 WILD-TYPE" "OR11H4 WILD-TYPE" "OR11H4 WILD-TYPE" 
      TCGA-44-4112       TCGA-44-5643       TCGA-44-5645       TCGA-44-6144 
"OR11H4 WILD-TYPE" "OR11H4 WILD-TYPE" "OR11H4 WILD-TYPE" "OR11H4 WILD-TYPE" 
      TCGA-44-6145       TCGA-44-6146       TCGA-44-6147       TCGA-44-6148 
"OR11H4 WILD-TYPE" "OR11H4 WILD-TYPE" "OR11H4 WILD-TYPE" "OR11H4 WILD-TYPE" 
      TCGA-44-6774       TCGA-44-6775       TCGA-44-6776       TCGA-44-6777 
"OR11H4 WILD-TYPE" "OR11H4 WILD-TYPE" "OR11H4 WILD-TYPE" "OR11H4 WILD-TYPE" 
      TCGA-44-6778       TCGA-44-6779       TCGA-49-4486       TCGA-49-4487 
"OR11H4 WILD-TYPE" "OR11H4 WILD-TYPE" "OR11H4 WILD-TYPE" "OR11H4 WILD-TYPE" 
      TCGA-49-4488       TCGA-49-4490       TCGA-49-4494       TCGA-49-4501 
"OR11H4 WILD-TYPE" "OR11H4 WILD-TYPE" "OR11H4 WILD-TYPE" "OR11H4 WILD-TYPE" 
      TCGA-49-4505       TCGA-49-4506       TCGA-49-4507       TCGA-49-4510 
"OR11H4 WILD-TYPE" "OR11H4 WILD-TYPE" "OR11H4 WILD-TYPE" "OR11H4 WILD-TYPE" 
      TCGA-49-4512       TCGA-49-4514       TCGA-49-6742       TCGA-49-6743 
"OR11H4 WILD-TYPE" "OR11H4 WILD-TYPE" "OR11H4 WILD-TYPE" "OR11H4 WILD-TYPE" 
      TCGA-49-6744       TCGA-49-6745       TCGA-50-5044       TCGA-50-5045 
"OR11H4 WILD-TYPE" "OR11H4 WILD-TYPE" "OR11H4 WILD-TYPE" "OR11H4 WILD-TYPE" 
      TCGA-50-5049       TCGA-50-5051       TCGA-50-5055       TCGA-50-5066 
"OR11H4 WILD-TYPE" "OR11H4 WILD-TYPE" "OR11H4 WILD-TYPE" "OR11H4 WILD-TYPE" 
      TCGA-50-5068       TCGA-50-5072       TCGA-50-5930       TCGA-50-5931 
"OR11H4 WILD-TYPE" "OR11H4 WILD-TYPE" "OR11H4 WILD-TYPE" "OR11H4 WILD-TYPE" 
      TCGA-50-5932       TCGA-50-5933       TCGA-50-5935       TCGA-50-5936 
"OR11H4 WILD-TYPE"   "OR11H4 MUTATED" "OR11H4 WILD-TYPE" "OR11H4 WILD-TYPE" 
      TCGA-50-5939       TCGA-50-5941       TCGA-50-5942       TCGA-50-5944 
"OR11H4 WILD-TYPE" "OR11H4 WILD-TYPE" "OR11H4 WILD-TYPE" "OR11H4 WILD-TYPE" 
      TCGA-50-5946       TCGA-50-6590       TCGA-50-6591       TCGA-50-6592 
"OR11H4 WILD-TYPE" "OR11H4 WILD-TYPE" "OR11H4 WILD-TYPE" "OR11H4 WILD-TYPE" 
      TCGA-50-6593       TCGA-50-6594       TCGA-50-6595       TCGA-50-6597 
"OR11H4 WILD-TYPE" "OR11H4 WILD-TYPE" "OR11H4 WILD-TYPE" "OR11H4 WILD-TYPE" 
      TCGA-55-1592       TCGA-55-1594       TCGA-55-1595       TCGA-55-1596 
"OR11H4 WILD-TYPE" "OR11H4 WILD-TYPE" "OR11H4 WILD-TYPE" "OR11H4 WILD-TYPE" 
      TCGA-55-5899       TCGA-55-6543       TCGA-55-6642       TCGA-55-6712 
"OR11H4 WILD-TYPE" "OR11H4 WILD-TYPE" "OR11H4 WILD-TYPE" "OR11H4 WILD-TYPE" 
      TCGA-64-1676       TCGA-64-1677       TCGA-64-1678       TCGA-64-1680 
"OR11H4 WILD-TYPE" "OR11H4 WILD-TYPE" "OR11H4 WILD-TYPE" "OR11H4 WILD-TYPE" 
      TCGA-64-5774       TCGA-64-5775       TCGA-64-5778       TCGA-64-5779 
"OR11H4 WILD-TYPE" "OR11H4 WILD-TYPE" "OR11H4 WILD-TYPE" "OR11H4 WILD-TYPE" 
      TCGA-64-5781       TCGA-64-5815       TCGA-67-3770       TCGA-67-3771 
"OR11H4 WILD-TYPE" "OR11H4 WILD-TYPE" "OR11H4 WILD-TYPE" "OR11H4 WILD-TYPE" 
      TCGA-67-3772       TCGA-67-3773       TCGA-67-3774       TCGA-67-6215 
"OR11H4 WILD-TYPE" "OR11H4 WILD-TYPE" "OR11H4 WILD-TYPE" "OR11H4 WILD-TYPE" 
      TCGA-67-6216       TCGA-67-6217       TCGA-71-6725       TCGA-73-4658 
"OR11H4 WILD-TYPE" "OR11H4 WILD-TYPE" "OR11H4 WILD-TYPE" "OR11H4 WILD-TYPE" 
      TCGA-73-4659       TCGA-73-4662       TCGA-73-4666       TCGA-73-4668 
"OR11H4 WILD-TYPE" "OR11H4 WILD-TYPE" "OR11H4 WILD-TYPE" "OR11H4 WILD-TYPE" 
      TCGA-73-4670       TCGA-73-4675       TCGA-73-4676       TCGA-73-4677 
"OR11H4 WILD-TYPE" "OR11H4 WILD-TYPE" "OR11H4 WILD-TYPE" "OR11H4 WILD-TYPE" 
      TCGA-91-6828       TCGA-91-6829       TCGA-91-6831       TCGA-91-6835 
"OR11H4 WILD-TYPE" "OR11H4 WILD-TYPE" "OR11H4 WILD-TYPE" "OR11H4 WILD-TYPE" 
      TCGA-91-6836 
"OR11H4 WILD-TYPE" 
[1] "hr=" "3.3"
D252V2, continuous
D252V3, binary
[1] "tbl2"
                  cls
clus               [,1] [,2]
  OR11H4 MUTATED      2    2
  OR11H4 WILD-TYPE   91   77
        clus
vv       OR11H4 MUTATED OR11H4 WILD-TYPE
  FEMALE              2               91
  MALE                2               77
D252V4, continuous
D252V5, multiclass
D252V6, multiclass
    clus
vv   OR11H4 MUTATED OR11H4 WILD-TYPE
  T1              0               41
  T2              2              106
  T3              1               13
  T4              1                7
D252V7, multiclass
       clus
vv      OR11H4 MUTATED OR11H4 WILD-TYPE
  N0                 2               93
  N1                 0               37
  N2+N3              2               33
D252V8, multiclass
    clus
vv   OR11H4 MUTATED OR11H4 WILD-TYPE
  M0              4              133
  M1              0                9
  MX              0               22
D252V9, multiclass
     clus
vv    OR11H4 MUTATED OR11H4 WILD-TYPE
  I                2               86
  II               0               33
  III              2               37
  IV               0                9
D252V10, binary
[1] "tbl2"
                  cls
clus               [,1] [,2]
  OR11H4 MUTATED      1    3
  OR11H4 WILD-TYPE   15  153
     clus
vv    OR11H4 MUTATED OR11H4 WILD-TYPE
  NO               1               15
  YES              3              153
D252V11, continuous
D252V12, continuous
[1] "Remove cluster labels:" "OR11H4 MUTATED"        
clus
  OR11H4 MUTATED OR11H4 WILD-TYPE 
               2               80 
      TCGA-05-4384       TCGA-05-4390       TCGA-05-4396       TCGA-05-4403 
"OR11H4 WILD-TYPE" "OR11H4 WILD-TYPE" "OR11H4 WILD-TYPE" "OR11H4 WILD-TYPE" 
      TCGA-05-4405       TCGA-05-4410       TCGA-05-4415       TCGA-05-4417 
"OR11H4 WILD-TYPE" "OR11H4 WILD-TYPE" "OR11H4 WILD-TYPE" "OR11H4 WILD-TYPE" 
      TCGA-05-4424       TCGA-05-4427       TCGA-05-4433       TCGA-05-5420 
"OR11H4 WILD-TYPE" "OR11H4 WILD-TYPE" "OR11H4 WILD-TYPE" "OR11H4 WILD-TYPE" 
      TCGA-05-5423       TCGA-05-5425       TCGA-05-5428       TCGA-35-4122 
"OR11H4 WILD-TYPE" "OR11H4 WILD-TYPE" "OR11H4 WILD-TYPE" "OR11H4 WILD-TYPE" 
      TCGA-35-4123       TCGA-35-5375       TCGA-38-4629       TCGA-38-4632 
"OR11H4 WILD-TYPE" "OR11H4 WILD-TYPE" "OR11H4 WILD-TYPE" "OR11H4 WILD-TYPE" 
      TCGA-44-2655       TCGA-44-2656       TCGA-44-2657       TCGA-44-2659 
"OR11H4 WILD-TYPE" "OR11H4 WILD-TYPE" "OR11H4 WILD-TYPE" "OR11H4 WILD-TYPE" 
      TCGA-44-2662       TCGA-44-3398       TCGA-44-3918       TCGA-44-4112 
"OR11H4 WILD-TYPE" "OR11H4 WILD-TYPE" "OR11H4 WILD-TYPE" "OR11H4 WILD-TYPE" 
      TCGA-44-5645       TCGA-44-6145       TCGA-44-6146       TCGA-44-6147 
"OR11H4 WILD-TYPE" "OR11H4 WILD-TYPE" "OR11H4 WILD-TYPE" "OR11H4 WILD-TYPE" 
      TCGA-44-6148       TCGA-44-6775       TCGA-44-6776       TCGA-44-6777 
"OR11H4 WILD-TYPE" "OR11H4 WILD-TYPE" "OR11H4 WILD-TYPE" "OR11H4 WILD-TYPE" 
      TCGA-44-6778       TCGA-44-6779       TCGA-49-4486       TCGA-49-4488 
"OR11H4 WILD-TYPE" "OR11H4 WILD-TYPE" "OR11H4 WILD-TYPE" "OR11H4 WILD-TYPE" 
      TCGA-49-4494       TCGA-49-4505       TCGA-49-4507       TCGA-50-5051 
"OR11H4 WILD-TYPE" "OR11H4 WILD-TYPE" "OR11H4 WILD-TYPE" "OR11H4 WILD-TYPE" 
      TCGA-50-5072       TCGA-50-5939       TCGA-50-5942       TCGA-50-5946 
"OR11H4 WILD-TYPE" "OR11H4 WILD-TYPE" "OR11H4 WILD-TYPE" "OR11H4 WILD-TYPE" 
      TCGA-50-6590       TCGA-50-6594       TCGA-50-6595       TCGA-55-1592 
"OR11H4 WILD-TYPE" "OR11H4 WILD-TYPE" "OR11H4 WILD-TYPE" "OR11H4 WILD-TYPE" 
      TCGA-55-1595       TCGA-55-6543       TCGA-55-6712       TCGA-64-1678 
"OR11H4 WILD-TYPE" "OR11H4 WILD-TYPE" "OR11H4 WILD-TYPE" "OR11H4 WILD-TYPE" 
      TCGA-64-1680       TCGA-64-5774       TCGA-64-5778       TCGA-64-5779 
"OR11H4 WILD-TYPE" "OR11H4 WILD-TYPE" "OR11H4 WILD-TYPE" "OR11H4 WILD-TYPE" 
      TCGA-64-5781       TCGA-64-5815       TCGA-67-6217       TCGA-73-4659 
"OR11H4 WILD-TYPE" "OR11H4 WILD-TYPE" "OR11H4 WILD-TYPE" "OR11H4 WILD-TYPE" 
      TCGA-73-4662       TCGA-73-4666       TCGA-73-4668       TCGA-73-4670 
"OR11H4 WILD-TYPE" "OR11H4 WILD-TYPE" "OR11H4 WILD-TYPE" "OR11H4 WILD-TYPE" 
      TCGA-73-4675       TCGA-73-4676       TCGA-73-4677       TCGA-75-5122 
"OR11H4 WILD-TYPE" "OR11H4 WILD-TYPE" "OR11H4 WILD-TYPE" "OR11H4 WILD-TYPE" 
      TCGA-75-5125       TCGA-75-5146       TCGA-75-6206       TCGA-75-6207 
"OR11H4 WILD-TYPE" "OR11H4 WILD-TYPE" "OR11H4 WILD-TYPE" "OR11H4 WILD-TYPE" 
      TCGA-80-5611       TCGA-91-6828       TCGA-91-6829       TCGA-91-6835 
"OR11H4 WILD-TYPE" "OR11H4 WILD-TYPE" "OR11H4 WILD-TYPE" "OR11H4 WILD-TYPE" 
D252V13, multiclass
                                             clus
vv                                            OR11H4 MUTATED OR11H4 WILD-TYPE
  CURRENT REFORMED SMOKER FOR < OR = 15 YEARS              2               60
  CURRENT REFORMED SMOKER FOR > 15 YEARS                   0               46
  CURRENT SMOKER                                           1               27
  LIFELONG NON-SMOKER                                      0               24
D252V14, continuous
[1] "Remove cluster labels:" "OR11H4 MUTATED"        
clus
  OR11H4 MUTATED OR11H4 WILD-TYPE 
               2               66 
      TCGA-05-4384       TCGA-05-4390       TCGA-05-4396       TCGA-05-4405 
"OR11H4 WILD-TYPE" "OR11H4 WILD-TYPE" "OR11H4 WILD-TYPE" "OR11H4 WILD-TYPE" 
      TCGA-05-4410       TCGA-05-4415       TCGA-05-4417       TCGA-05-4424 
"OR11H4 WILD-TYPE" "OR11H4 WILD-TYPE" "OR11H4 WILD-TYPE" "OR11H4 WILD-TYPE" 
      TCGA-05-4427       TCGA-05-4433       TCGA-05-5420       TCGA-05-5423 
"OR11H4 WILD-TYPE" "OR11H4 WILD-TYPE" "OR11H4 WILD-TYPE" "OR11H4 WILD-TYPE" 
      TCGA-05-5425       TCGA-05-5428       TCGA-35-4122       TCGA-35-4123 
"OR11H4 WILD-TYPE" "OR11H4 WILD-TYPE" "OR11H4 WILD-TYPE" "OR11H4 WILD-TYPE" 
      TCGA-35-5375       TCGA-38-4626       TCGA-44-2655       TCGA-44-2656 
"OR11H4 WILD-TYPE" "OR11H4 WILD-TYPE" "OR11H4 WILD-TYPE" "OR11H4 WILD-TYPE" 
      TCGA-44-2657       TCGA-44-2659       TCGA-44-2662       TCGA-44-2666 
"OR11H4 WILD-TYPE" "OR11H4 WILD-TYPE" "OR11H4 WILD-TYPE" "OR11H4 WILD-TYPE" 
      TCGA-44-3396       TCGA-44-3398       TCGA-44-3918       TCGA-44-4112 
"OR11H4 WILD-TYPE" "OR11H4 WILD-TYPE" "OR11H4 WILD-TYPE" "OR11H4 WILD-TYPE" 
      TCGA-44-5645       TCGA-44-6144       TCGA-44-6145       TCGA-44-6147 
"OR11H4 WILD-TYPE" "OR11H4 WILD-TYPE" "OR11H4 WILD-TYPE" "OR11H4 WILD-TYPE" 
      TCGA-44-6148       TCGA-44-6774       TCGA-44-6775       TCGA-44-6776 
"OR11H4 WILD-TYPE" "OR11H4 WILD-TYPE" "OR11H4 WILD-TYPE" "OR11H4 WILD-TYPE" 
      TCGA-44-6777       TCGA-44-6778       TCGA-44-6779       TCGA-49-4486 
"OR11H4 WILD-TYPE" "OR11H4 WILD-TYPE" "OR11H4 WILD-TYPE" "OR11H4 WILD-TYPE" 
      TCGA-49-4494       TCGA-49-4505       TCGA-55-1592       TCGA-55-1594 
"OR11H4 WILD-TYPE" "OR11H4 WILD-TYPE" "OR11H4 WILD-TYPE" "OR11H4 WILD-TYPE" 
      TCGA-55-1595       TCGA-55-1596       TCGA-55-5899       TCGA-55-6642 
"OR11H4 WILD-TYPE" "OR11H4 WILD-TYPE" "OR11H4 WILD-TYPE" "OR11H4 WILD-TYPE" 
      TCGA-55-6712       TCGA-64-1677       TCGA-64-1678       TCGA-64-1680 
"OR11H4 WILD-TYPE" "OR11H4 WILD-TYPE" "OR11H4 WILD-TYPE" "OR11H4 WILD-TYPE" 
      TCGA-64-5774       TCGA-64-5775       TCGA-64-5778       TCGA-64-5779 
"OR11H4 WILD-TYPE" "OR11H4 WILD-TYPE" "OR11H4 WILD-TYPE" "OR11H4 WILD-TYPE" 
      TCGA-64-5781       TCGA-73-4659       TCGA-73-4662       TCGA-73-4666 
"OR11H4 WILD-TYPE" "OR11H4 WILD-TYPE" "OR11H4 WILD-TYPE" "OR11H4 WILD-TYPE" 
      TCGA-73-4668       TCGA-73-4670       TCGA-73-4675       TCGA-73-4676 
"OR11H4 WILD-TYPE" "OR11H4 WILD-TYPE" "OR11H4 WILD-TYPE" "OR11H4 WILD-TYPE" 
      TCGA-91-6829       TCGA-91-6836 
"OR11H4 WILD-TYPE" "OR11H4 WILD-TYPE" 

Clustering(253) Variable = OR10A5 MUTATION ANALYSIS
D253V1, survival
                  sevent
clus2               0  1
  OR10A5 MUTATED    1  4
  OR10A5 WILD-TYPE 98 46
  OR10A5 MUTATED OR10A5 WILD-TYPE 
               5              144 
  OR10A5 MUTATED OR10A5 WILD-TYPE 
               4               46 
$`OR10A5 MUTATED`
TCGA-05-4396 TCGA-05-4397 TCGA-05-4402 TCGA-44-6778 TCGA-50-6592 
        9.96        24.03         8.02        36.49        25.51 

$`OR10A5 WILD-TYPE`
TCGA-05-4249 TCGA-05-4250 TCGA-05-4382 TCGA-05-4384 TCGA-05-4390 TCGA-05-4398 
       38.07         3.98        19.92        14.01        37.02        47.05 
TCGA-05-4405 TCGA-05-4415 TCGA-05-4417 TCGA-05-4418 TCGA-05-4420 TCGA-05-4424 
       20.05         2.96        14.93         8.98        29.95        30.02 
TCGA-05-4426 TCGA-05-4427 TCGA-05-4430 TCGA-05-4432 TCGA-05-4433 TCGA-05-4434 
       26.01        26.01        25.02        25.02        24.00        15.02 
TCGA-05-5420 TCGA-05-5423 TCGA-05-5425 TCGA-05-5429 TCGA-05-5715 TCGA-35-3615 
        1.02         4.96         2.96         0.99         2.04         0.46 
TCGA-35-4122 TCGA-35-4123 TCGA-35-5375 TCGA-38-4625 TCGA-38-4626 TCGA-38-4627 
        7.36         5.95         8.68        47.61        85.32        37.71 
TCGA-38-4628 TCGA-38-4629 TCGA-38-4630 TCGA-38-4631 TCGA-38-4632 TCGA-38-6178 
       49.02        28.37        35.28        11.64        44.61         5.19 
TCGA-44-2655 TCGA-44-2656 TCGA-44-2657 TCGA-44-2659 TCGA-44-2661 TCGA-44-2662 
       18.87        19.10        13.15        17.39         3.39        15.78 
TCGA-44-2665 TCGA-44-2666 TCGA-44-2668 TCGA-44-3396 TCGA-44-3398 TCGA-44-3918 
       13.15         3.19         8.09        10.22         8.32         6.44 
TCGA-44-3919 TCGA-44-4112 TCGA-44-5643 TCGA-44-5645 TCGA-44-6144 TCGA-44-6145 
        6.21         4.60         3.48         6.84         0.30         3.35 
TCGA-44-6146 TCGA-44-6147 TCGA-44-6148 TCGA-44-6774 TCGA-44-6775 TCGA-44-6776 
        9.93         7.76         3.12         5.42         2.70        63.72 
TCGA-44-6777 TCGA-44-6779 TCGA-49-4486 TCGA-49-4487 TCGA-49-4488 TCGA-49-4490 
       32.45        16.41        76.21        28.11        28.57        12.66 
TCGA-49-4494 TCGA-49-4501 TCGA-49-4505 TCGA-49-4506 TCGA-49-4507 TCGA-49-4510 
       35.54        46.72        14.07        32.84         8.81        29.46 
TCGA-49-4512 TCGA-49-4514 TCGA-49-6742 TCGA-49-6743 TCGA-49-6744 TCGA-49-6745 
       29.75        43.20        15.02        12.13        12.99         4.93 
TCGA-50-5044 TCGA-50-5045 TCGA-50-5049 TCGA-50-5051 TCGA-50-5055 TCGA-50-5066 
       20.48        71.47        48.82        14.96        25.81         9.76 
TCGA-50-5068 TCGA-50-5072 TCGA-50-5930 TCGA-50-5931 TCGA-50-5932 TCGA-50-5933 
       49.28         8.05         9.27         8.78        35.87        77.88 
TCGA-50-5935 TCGA-50-5936 TCGA-50-5939 TCGA-50-5941 TCGA-50-5942 TCGA-50-5944 
       21.47         8.45        15.12         9.37         4.44        12.26 
TCGA-50-5946 TCGA-50-6590 TCGA-50-6591 TCGA-50-6593 TCGA-50-6594 TCGA-50-6595 
       11.47        42.31         3.88        11.05        12.16         6.21 
TCGA-50-6597 TCGA-55-1592 TCGA-55-1594 TCGA-55-1595 TCGA-55-1596 TCGA-55-5899 
       33.37        23.05        38.73        48.62        45.17         2.86 
TCGA-55-6543 TCGA-55-6642 TCGA-55-6712 TCGA-64-1676 TCGA-64-1677 TCGA-64-1678 
        0.07        32.61         0.79        56.81        20.65        39.09 
TCGA-64-1680 TCGA-64-5774 TCGA-64-5775 TCGA-64-5778 TCGA-64-5779 TCGA-64-5781 
       37.02        83.84         0.10        30.44        16.67        39.52 
TCGA-64-5815 TCGA-67-3770 TCGA-67-3771 TCGA-67-3772 TCGA-67-3773 TCGA-67-3774 
        7.33         0.99         1.97         0.59         2.04         0.59 
TCGA-67-6215 TCGA-67-6216 TCGA-67-6217 TCGA-71-6725 TCGA-73-4658 TCGA-73-4659 
        0.89         0.69        13.87         2.01        52.57        23.38 
TCGA-73-4662 TCGA-73-4666 TCGA-73-4668 TCGA-73-4670 TCGA-73-4675 TCGA-73-4676 
       29.95        20.28        15.35         0.46         1.32         4.01 
TCGA-73-4677 TCGA-91-6828 TCGA-91-6829 TCGA-91-6831 TCGA-91-6835 TCGA-91-6836 
        1.25         1.22        41.33         1.28         1.15         0.36 

  OR10A5 MUTATED OR10A5 WILD-TYPE 
            8.02             0.07 
  OR10A5 MUTATED OR10A5 WILD-TYPE 
           36.49            85.32 
  OR10A5 MUTATED OR10A5 WILD-TYPE 
           24.03            13.51 
[1] "8.0 - 36.5 (24.0)" "0.1 - 85.3 (13.5)"
      TCGA-05-4249       TCGA-05-4250       TCGA-05-4382       TCGA-05-4384 
"OR10A5 WILD-TYPE" "OR10A5 WILD-TYPE" "OR10A5 WILD-TYPE" "OR10A5 WILD-TYPE" 
      TCGA-05-4390       TCGA-05-4396       TCGA-05-4397       TCGA-05-4398 
"OR10A5 WILD-TYPE"   "OR10A5 MUTATED"   "OR10A5 MUTATED" "OR10A5 WILD-TYPE" 
      TCGA-05-4402       TCGA-05-4405       TCGA-05-4415       TCGA-05-4417 
  "OR10A5 MUTATED" "OR10A5 WILD-TYPE" "OR10A5 WILD-TYPE" "OR10A5 WILD-TYPE" 
      TCGA-05-4418       TCGA-05-4420       TCGA-05-4424       TCGA-05-4426 
"OR10A5 WILD-TYPE" "OR10A5 WILD-TYPE" "OR10A5 WILD-TYPE" "OR10A5 WILD-TYPE" 
      TCGA-05-4427       TCGA-05-4430       TCGA-05-4432       TCGA-05-4433 
"OR10A5 WILD-TYPE" "OR10A5 WILD-TYPE" "OR10A5 WILD-TYPE" "OR10A5 WILD-TYPE" 
      TCGA-05-4434       TCGA-05-5420       TCGA-05-5423       TCGA-05-5425 
"OR10A5 WILD-TYPE" "OR10A5 WILD-TYPE" "OR10A5 WILD-TYPE" "OR10A5 WILD-TYPE" 
      TCGA-05-5429       TCGA-05-5715       TCGA-35-3615       TCGA-35-4122 
"OR10A5 WILD-TYPE" "OR10A5 WILD-TYPE" "OR10A5 WILD-TYPE" "OR10A5 WILD-TYPE" 
      TCGA-35-4123       TCGA-35-5375       TCGA-38-4625       TCGA-38-4626 
"OR10A5 WILD-TYPE" "OR10A5 WILD-TYPE" "OR10A5 WILD-TYPE" "OR10A5 WILD-TYPE" 
      TCGA-38-4627       TCGA-38-4628       TCGA-38-4629       TCGA-38-4630 
"OR10A5 WILD-TYPE" "OR10A5 WILD-TYPE" "OR10A5 WILD-TYPE" "OR10A5 WILD-TYPE" 
      TCGA-38-4631       TCGA-38-4632       TCGA-38-6178       TCGA-44-2655 
"OR10A5 WILD-TYPE" "OR10A5 WILD-TYPE" "OR10A5 WILD-TYPE" "OR10A5 WILD-TYPE" 
      TCGA-44-2656       TCGA-44-2657       TCGA-44-2659       TCGA-44-2661 
"OR10A5 WILD-TYPE" "OR10A5 WILD-TYPE" "OR10A5 WILD-TYPE" "OR10A5 WILD-TYPE" 
      TCGA-44-2662       TCGA-44-2665       TCGA-44-2666       TCGA-44-2668 
"OR10A5 WILD-TYPE" "OR10A5 WILD-TYPE" "OR10A5 WILD-TYPE" "OR10A5 WILD-TYPE" 
      TCGA-44-3396       TCGA-44-3398       TCGA-44-3918       TCGA-44-3919 
"OR10A5 WILD-TYPE" "OR10A5 WILD-TYPE" "OR10A5 WILD-TYPE" "OR10A5 WILD-TYPE" 
      TCGA-44-4112       TCGA-44-5643       TCGA-44-5645       TCGA-44-6144 
"OR10A5 WILD-TYPE" "OR10A5 WILD-TYPE" "OR10A5 WILD-TYPE" "OR10A5 WILD-TYPE" 
      TCGA-44-6145       TCGA-44-6146       TCGA-44-6147       TCGA-44-6148 
"OR10A5 WILD-TYPE" "OR10A5 WILD-TYPE" "OR10A5 WILD-TYPE" "OR10A5 WILD-TYPE" 
      TCGA-44-6774       TCGA-44-6775       TCGA-44-6776       TCGA-44-6777 
"OR10A5 WILD-TYPE" "OR10A5 WILD-TYPE" "OR10A5 WILD-TYPE" "OR10A5 WILD-TYPE" 
      TCGA-44-6778       TCGA-44-6779       TCGA-49-4486       TCGA-49-4487 
  "OR10A5 MUTATED" "OR10A5 WILD-TYPE" "OR10A5 WILD-TYPE" "OR10A5 WILD-TYPE" 
      TCGA-49-4488       TCGA-49-4490       TCGA-49-4494       TCGA-49-4501 
"OR10A5 WILD-TYPE" "OR10A5 WILD-TYPE" "OR10A5 WILD-TYPE" "OR10A5 WILD-TYPE" 
      TCGA-49-4505       TCGA-49-4506       TCGA-49-4507       TCGA-49-4510 
"OR10A5 WILD-TYPE" "OR10A5 WILD-TYPE" "OR10A5 WILD-TYPE" "OR10A5 WILD-TYPE" 
      TCGA-49-4512       TCGA-49-4514       TCGA-49-6742       TCGA-49-6743 
"OR10A5 WILD-TYPE" "OR10A5 WILD-TYPE" "OR10A5 WILD-TYPE" "OR10A5 WILD-TYPE" 
      TCGA-49-6744       TCGA-49-6745       TCGA-50-5044       TCGA-50-5045 
"OR10A5 WILD-TYPE" "OR10A5 WILD-TYPE" "OR10A5 WILD-TYPE" "OR10A5 WILD-TYPE" 
      TCGA-50-5049       TCGA-50-5051       TCGA-50-5055       TCGA-50-5066 
"OR10A5 WILD-TYPE" "OR10A5 WILD-TYPE" "OR10A5 WILD-TYPE" "OR10A5 WILD-TYPE" 
      TCGA-50-5068       TCGA-50-5072       TCGA-50-5930       TCGA-50-5931 
"OR10A5 WILD-TYPE" "OR10A5 WILD-TYPE" "OR10A5 WILD-TYPE" "OR10A5 WILD-TYPE" 
      TCGA-50-5932       TCGA-50-5933       TCGA-50-5935       TCGA-50-5936 
"OR10A5 WILD-TYPE" "OR10A5 WILD-TYPE" "OR10A5 WILD-TYPE" "OR10A5 WILD-TYPE" 
      TCGA-50-5939       TCGA-50-5941       TCGA-50-5942       TCGA-50-5944 
"OR10A5 WILD-TYPE" "OR10A5 WILD-TYPE" "OR10A5 WILD-TYPE" "OR10A5 WILD-TYPE" 
      TCGA-50-5946       TCGA-50-6590       TCGA-50-6591       TCGA-50-6592 
"OR10A5 WILD-TYPE" "OR10A5 WILD-TYPE" "OR10A5 WILD-TYPE"   "OR10A5 MUTATED" 
      TCGA-50-6593       TCGA-50-6594       TCGA-50-6595       TCGA-50-6597 
"OR10A5 WILD-TYPE" "OR10A5 WILD-TYPE" "OR10A5 WILD-TYPE" "OR10A5 WILD-TYPE" 
      TCGA-55-1592       TCGA-55-1594       TCGA-55-1595       TCGA-55-1596 
"OR10A5 WILD-TYPE" "OR10A5 WILD-TYPE" "OR10A5 WILD-TYPE" "OR10A5 WILD-TYPE" 
      TCGA-55-5899       TCGA-55-6543       TCGA-55-6642       TCGA-55-6712 
"OR10A5 WILD-TYPE" "OR10A5 WILD-TYPE" "OR10A5 WILD-TYPE" "OR10A5 WILD-TYPE" 
      TCGA-64-1676       TCGA-64-1677       TCGA-64-1678       TCGA-64-1680 
"OR10A5 WILD-TYPE" "OR10A5 WILD-TYPE" "OR10A5 WILD-TYPE" "OR10A5 WILD-TYPE" 
      TCGA-64-5774       TCGA-64-5775       TCGA-64-5778       TCGA-64-5779 
"OR10A5 WILD-TYPE" "OR10A5 WILD-TYPE" "OR10A5 WILD-TYPE" "OR10A5 WILD-TYPE" 
      TCGA-64-5781       TCGA-64-5815       TCGA-67-3770       TCGA-67-3771 
"OR10A5 WILD-TYPE" "OR10A5 WILD-TYPE" "OR10A5 WILD-TYPE" "OR10A5 WILD-TYPE" 
      TCGA-67-3772       TCGA-67-3773       TCGA-67-3774       TCGA-67-6215 
"OR10A5 WILD-TYPE" "OR10A5 WILD-TYPE" "OR10A5 WILD-TYPE" "OR10A5 WILD-TYPE" 
      TCGA-67-6216       TCGA-67-6217       TCGA-71-6725       TCGA-73-4658 
"OR10A5 WILD-TYPE" "OR10A5 WILD-TYPE" "OR10A5 WILD-TYPE" "OR10A5 WILD-TYPE" 
      TCGA-73-4659       TCGA-73-4662       TCGA-73-4666       TCGA-73-4668 
"OR10A5 WILD-TYPE" "OR10A5 WILD-TYPE" "OR10A5 WILD-TYPE" "OR10A5 WILD-TYPE" 
      TCGA-73-4670       TCGA-73-4675       TCGA-73-4676       TCGA-73-4677 
"OR10A5 WILD-TYPE" "OR10A5 WILD-TYPE" "OR10A5 WILD-TYPE" "OR10A5 WILD-TYPE" 
      TCGA-91-6828       TCGA-91-6829       TCGA-91-6831       TCGA-91-6835 
"OR10A5 WILD-TYPE" "OR10A5 WILD-TYPE" "OR10A5 WILD-TYPE" "OR10A5 WILD-TYPE" 
      TCGA-91-6836 
"OR10A5 WILD-TYPE" 
      TCGA-05-4249       TCGA-05-4250       TCGA-05-4382       TCGA-05-4384 
"OR10A5 WILD-TYPE" "OR10A5 WILD-TYPE" "OR10A5 WILD-TYPE" "OR10A5 WILD-TYPE" 
      TCGA-05-4390       TCGA-05-4396       TCGA-05-4397       TCGA-05-4398 
"OR10A5 WILD-TYPE"   "OR10A5 MUTATED"   "OR10A5 MUTATED" "OR10A5 WILD-TYPE" 
      TCGA-05-4402       TCGA-05-4405       TCGA-05-4415       TCGA-05-4417 
  "OR10A5 MUTATED" "OR10A5 WILD-TYPE" "OR10A5 WILD-TYPE" "OR10A5 WILD-TYPE" 
      TCGA-05-4418       TCGA-05-4420       TCGA-05-4424       TCGA-05-4426 
"OR10A5 WILD-TYPE" "OR10A5 WILD-TYPE" "OR10A5 WILD-TYPE" "OR10A5 WILD-TYPE" 
      TCGA-05-4427       TCGA-05-4430       TCGA-05-4432       TCGA-05-4433 
"OR10A5 WILD-TYPE" "OR10A5 WILD-TYPE" "OR10A5 WILD-TYPE" "OR10A5 WILD-TYPE" 
      TCGA-05-4434       TCGA-05-5420       TCGA-05-5423       TCGA-05-5425 
"OR10A5 WILD-TYPE" "OR10A5 WILD-TYPE" "OR10A5 WILD-TYPE" "OR10A5 WILD-TYPE" 
      TCGA-05-5429       TCGA-05-5715       TCGA-35-3615       TCGA-35-4122 
"OR10A5 WILD-TYPE" "OR10A5 WILD-TYPE" "OR10A5 WILD-TYPE" "OR10A5 WILD-TYPE" 
      TCGA-35-4123       TCGA-35-5375       TCGA-38-4625       TCGA-38-4626 
"OR10A5 WILD-TYPE" "OR10A5 WILD-TYPE" "OR10A5 WILD-TYPE" "OR10A5 WILD-TYPE" 
      TCGA-38-4627       TCGA-38-4628       TCGA-38-4629       TCGA-38-4630 
"OR10A5 WILD-TYPE" "OR10A5 WILD-TYPE" "OR10A5 WILD-TYPE" "OR10A5 WILD-TYPE" 
      TCGA-38-4631       TCGA-38-4632       TCGA-38-6178       TCGA-44-2655 
"OR10A5 WILD-TYPE" "OR10A5 WILD-TYPE" "OR10A5 WILD-TYPE" "OR10A5 WILD-TYPE" 
      TCGA-44-2656       TCGA-44-2657       TCGA-44-2659       TCGA-44-2661 
"OR10A5 WILD-TYPE" "OR10A5 WILD-TYPE" "OR10A5 WILD-TYPE" "OR10A5 WILD-TYPE" 
      TCGA-44-2662       TCGA-44-2665       TCGA-44-2666       TCGA-44-2668 
"OR10A5 WILD-TYPE" "OR10A5 WILD-TYPE" "OR10A5 WILD-TYPE" "OR10A5 WILD-TYPE" 
      TCGA-44-3396       TCGA-44-3398       TCGA-44-3918       TCGA-44-3919 
"OR10A5 WILD-TYPE" "OR10A5 WILD-TYPE" "OR10A5 WILD-TYPE" "OR10A5 WILD-TYPE" 
      TCGA-44-4112       TCGA-44-5643       TCGA-44-5645       TCGA-44-6144 
"OR10A5 WILD-TYPE" "OR10A5 WILD-TYPE" "OR10A5 WILD-TYPE" "OR10A5 WILD-TYPE" 
      TCGA-44-6145       TCGA-44-6146       TCGA-44-6147       TCGA-44-6148 
"OR10A5 WILD-TYPE" "OR10A5 WILD-TYPE" "OR10A5 WILD-TYPE" "OR10A5 WILD-TYPE" 
      TCGA-44-6774       TCGA-44-6775       TCGA-44-6776       TCGA-44-6777 
"OR10A5 WILD-TYPE" "OR10A5 WILD-TYPE" "OR10A5 WILD-TYPE" "OR10A5 WILD-TYPE" 
      TCGA-44-6778       TCGA-44-6779       TCGA-49-4486       TCGA-49-4487 
  "OR10A5 MUTATED" "OR10A5 WILD-TYPE" "OR10A5 WILD-TYPE" "OR10A5 WILD-TYPE" 
      TCGA-49-4488       TCGA-49-4490       TCGA-49-4494       TCGA-49-4501 
"OR10A5 WILD-TYPE" "OR10A5 WILD-TYPE" "OR10A5 WILD-TYPE" "OR10A5 WILD-TYPE" 
      TCGA-49-4505       TCGA-49-4506       TCGA-49-4507       TCGA-49-4510 
"OR10A5 WILD-TYPE" "OR10A5 WILD-TYPE" "OR10A5 WILD-TYPE" "OR10A5 WILD-TYPE" 
      TCGA-49-4512       TCGA-49-4514       TCGA-49-6742       TCGA-49-6743 
"OR10A5 WILD-TYPE" "OR10A5 WILD-TYPE" "OR10A5 WILD-TYPE" "OR10A5 WILD-TYPE" 
      TCGA-49-6744       TCGA-49-6745       TCGA-50-5044       TCGA-50-5045 
"OR10A5 WILD-TYPE" "OR10A5 WILD-TYPE" "OR10A5 WILD-TYPE" "OR10A5 WILD-TYPE" 
      TCGA-50-5049       TCGA-50-5051       TCGA-50-5055       TCGA-50-5066 
"OR10A5 WILD-TYPE" "OR10A5 WILD-TYPE" "OR10A5 WILD-TYPE" "OR10A5 WILD-TYPE" 
      TCGA-50-5068       TCGA-50-5072       TCGA-50-5930       TCGA-50-5931 
"OR10A5 WILD-TYPE" "OR10A5 WILD-TYPE" "OR10A5 WILD-TYPE" "OR10A5 WILD-TYPE" 
      TCGA-50-5932       TCGA-50-5933       TCGA-50-5935       TCGA-50-5936 
"OR10A5 WILD-TYPE" "OR10A5 WILD-TYPE" "OR10A5 WILD-TYPE" "OR10A5 WILD-TYPE" 
      TCGA-50-5939       TCGA-50-5941       TCGA-50-5942       TCGA-50-5944 
"OR10A5 WILD-TYPE" "OR10A5 WILD-TYPE" "OR10A5 WILD-TYPE" "OR10A5 WILD-TYPE" 
      TCGA-50-5946       TCGA-50-6590       TCGA-50-6591       TCGA-50-6592 
"OR10A5 WILD-TYPE" "OR10A5 WILD-TYPE" "OR10A5 WILD-TYPE"   "OR10A5 MUTATED" 
      TCGA-50-6593       TCGA-50-6594       TCGA-50-6595       TCGA-50-6597 
"OR10A5 WILD-TYPE" "OR10A5 WILD-TYPE" "OR10A5 WILD-TYPE" "OR10A5 WILD-TYPE" 
      TCGA-55-1592       TCGA-55-1594       TCGA-55-1595       TCGA-55-1596 
"OR10A5 WILD-TYPE" "OR10A5 WILD-TYPE" "OR10A5 WILD-TYPE" "OR10A5 WILD-TYPE" 
      TCGA-55-5899       TCGA-55-6543       TCGA-55-6642       TCGA-55-6712 
"OR10A5 WILD-TYPE" "OR10A5 WILD-TYPE" "OR10A5 WILD-TYPE" "OR10A5 WILD-TYPE" 
      TCGA-64-1676       TCGA-64-1677       TCGA-64-1678       TCGA-64-1680 
"OR10A5 WILD-TYPE" "OR10A5 WILD-TYPE" "OR10A5 WILD-TYPE" "OR10A5 WILD-TYPE" 
      TCGA-64-5774       TCGA-64-5775       TCGA-64-5778       TCGA-64-5779 
"OR10A5 WILD-TYPE" "OR10A5 WILD-TYPE" "OR10A5 WILD-TYPE" "OR10A5 WILD-TYPE" 
      TCGA-64-5781       TCGA-64-5815       TCGA-67-3770       TCGA-67-3771 
"OR10A5 WILD-TYPE" "OR10A5 WILD-TYPE" "OR10A5 WILD-TYPE" "OR10A5 WILD-TYPE" 
      TCGA-67-3772       TCGA-67-3773       TCGA-67-3774       TCGA-67-6215 
"OR10A5 WILD-TYPE" "OR10A5 WILD-TYPE" "OR10A5 WILD-TYPE" "OR10A5 WILD-TYPE" 
      TCGA-67-6216       TCGA-67-6217       TCGA-71-6725       TCGA-73-4658 
"OR10A5 WILD-TYPE" "OR10A5 WILD-TYPE" "OR10A5 WILD-TYPE" "OR10A5 WILD-TYPE" 
      TCGA-73-4659       TCGA-73-4662       TCGA-73-4666       TCGA-73-4668 
"OR10A5 WILD-TYPE" "OR10A5 WILD-TYPE" "OR10A5 WILD-TYPE" "OR10A5 WILD-TYPE" 
      TCGA-73-4670       TCGA-73-4675       TCGA-73-4676       TCGA-73-4677 
"OR10A5 WILD-TYPE" "OR10A5 WILD-TYPE" "OR10A5 WILD-TYPE" "OR10A5 WILD-TYPE" 
      TCGA-91-6828       TCGA-91-6829       TCGA-91-6831       TCGA-91-6835 
"OR10A5 WILD-TYPE" "OR10A5 WILD-TYPE" "OR10A5 WILD-TYPE" "OR10A5 WILD-TYPE" 
      TCGA-91-6836 
"OR10A5 WILD-TYPE" 
      TCGA-05-4249       TCGA-05-4250       TCGA-05-4382       TCGA-05-4384 
"OR10A5 WILD-TYPE" "OR10A5 WILD-TYPE" "OR10A5 WILD-TYPE" "OR10A5 WILD-TYPE" 
      TCGA-05-4390       TCGA-05-4396       TCGA-05-4397       TCGA-05-4398 
"OR10A5 WILD-TYPE"   "OR10A5 MUTATED"   "OR10A5 MUTATED" "OR10A5 WILD-TYPE" 
      TCGA-05-4402       TCGA-05-4405       TCGA-05-4415       TCGA-05-4417 
  "OR10A5 MUTATED" "OR10A5 WILD-TYPE" "OR10A5 WILD-TYPE" "OR10A5 WILD-TYPE" 
      TCGA-05-4418       TCGA-05-4420       TCGA-05-4424       TCGA-05-4426 
"OR10A5 WILD-TYPE" "OR10A5 WILD-TYPE" "OR10A5 WILD-TYPE" "OR10A5 WILD-TYPE" 
      TCGA-05-4427       TCGA-05-4430       TCGA-05-4432       TCGA-05-4433 
"OR10A5 WILD-TYPE" "OR10A5 WILD-TYPE" "OR10A5 WILD-TYPE" "OR10A5 WILD-TYPE" 
      TCGA-05-4434       TCGA-05-5420       TCGA-05-5423       TCGA-05-5425 
"OR10A5 WILD-TYPE" "OR10A5 WILD-TYPE" "OR10A5 WILD-TYPE" "OR10A5 WILD-TYPE" 
      TCGA-05-5429       TCGA-05-5715       TCGA-35-3615       TCGA-35-4122 
"OR10A5 WILD-TYPE" "OR10A5 WILD-TYPE" "OR10A5 WILD-TYPE" "OR10A5 WILD-TYPE" 
      TCGA-35-4123       TCGA-35-5375       TCGA-38-4625       TCGA-38-4626 
"OR10A5 WILD-TYPE" "OR10A5 WILD-TYPE" "OR10A5 WILD-TYPE" "OR10A5 WILD-TYPE" 
      TCGA-38-4627       TCGA-38-4628       TCGA-38-4629       TCGA-38-4630 
"OR10A5 WILD-TYPE" "OR10A5 WILD-TYPE" "OR10A5 WILD-TYPE" "OR10A5 WILD-TYPE" 
      TCGA-38-4631       TCGA-38-4632       TCGA-38-6178       TCGA-44-2655 
"OR10A5 WILD-TYPE" "OR10A5 WILD-TYPE" "OR10A5 WILD-TYPE" "OR10A5 WILD-TYPE" 
      TCGA-44-2656       TCGA-44-2657       TCGA-44-2659       TCGA-44-2661 
"OR10A5 WILD-TYPE" "OR10A5 WILD-TYPE" "OR10A5 WILD-TYPE" "OR10A5 WILD-TYPE" 
      TCGA-44-2662       TCGA-44-2665       TCGA-44-2666       TCGA-44-2668 
"OR10A5 WILD-TYPE" "OR10A5 WILD-TYPE" "OR10A5 WILD-TYPE" "OR10A5 WILD-TYPE" 
      TCGA-44-3396       TCGA-44-3398       TCGA-44-3918       TCGA-44-3919 
"OR10A5 WILD-TYPE" "OR10A5 WILD-TYPE" "OR10A5 WILD-TYPE" "OR10A5 WILD-TYPE" 
      TCGA-44-4112       TCGA-44-5643       TCGA-44-5645       TCGA-44-6144 
"OR10A5 WILD-TYPE" "OR10A5 WILD-TYPE" "OR10A5 WILD-TYPE" "OR10A5 WILD-TYPE" 
      TCGA-44-6145       TCGA-44-6146       TCGA-44-6147       TCGA-44-6148 
"OR10A5 WILD-TYPE" "OR10A5 WILD-TYPE" "OR10A5 WILD-TYPE" "OR10A5 WILD-TYPE" 
      TCGA-44-6774       TCGA-44-6775       TCGA-44-6776       TCGA-44-6777 
"OR10A5 WILD-TYPE" "OR10A5 WILD-TYPE" "OR10A5 WILD-TYPE" "OR10A5 WILD-TYPE" 
      TCGA-44-6778       TCGA-44-6779       TCGA-49-4486       TCGA-49-4487 
  "OR10A5 MUTATED" "OR10A5 WILD-TYPE" "OR10A5 WILD-TYPE" "OR10A5 WILD-TYPE" 
      TCGA-49-4488       TCGA-49-4490       TCGA-49-4494       TCGA-49-4501 
"OR10A5 WILD-TYPE" "OR10A5 WILD-TYPE" "OR10A5 WILD-TYPE" "OR10A5 WILD-TYPE" 
      TCGA-49-4505       TCGA-49-4506       TCGA-49-4507       TCGA-49-4510 
"OR10A5 WILD-TYPE" "OR10A5 WILD-TYPE" "OR10A5 WILD-TYPE" "OR10A5 WILD-TYPE" 
      TCGA-49-4512       TCGA-49-4514       TCGA-49-6742       TCGA-49-6743 
"OR10A5 WILD-TYPE" "OR10A5 WILD-TYPE" "OR10A5 WILD-TYPE" "OR10A5 WILD-TYPE" 
      TCGA-49-6744       TCGA-49-6745       TCGA-50-5044       TCGA-50-5045 
"OR10A5 WILD-TYPE" "OR10A5 WILD-TYPE" "OR10A5 WILD-TYPE" "OR10A5 WILD-TYPE" 
      TCGA-50-5049       TCGA-50-5051       TCGA-50-5055       TCGA-50-5066 
"OR10A5 WILD-TYPE" "OR10A5 WILD-TYPE" "OR10A5 WILD-TYPE" "OR10A5 WILD-TYPE" 
      TCGA-50-5068       TCGA-50-5072       TCGA-50-5930       TCGA-50-5931 
"OR10A5 WILD-TYPE" "OR10A5 WILD-TYPE" "OR10A5 WILD-TYPE" "OR10A5 WILD-TYPE" 
      TCGA-50-5932       TCGA-50-5933       TCGA-50-5935       TCGA-50-5936 
"OR10A5 WILD-TYPE" "OR10A5 WILD-TYPE" "OR10A5 WILD-TYPE" "OR10A5 WILD-TYPE" 
      TCGA-50-5939       TCGA-50-5941       TCGA-50-5942       TCGA-50-5944 
"OR10A5 WILD-TYPE" "OR10A5 WILD-TYPE" "OR10A5 WILD-TYPE" "OR10A5 WILD-TYPE" 
      TCGA-50-5946       TCGA-50-6590       TCGA-50-6591       TCGA-50-6592 
"OR10A5 WILD-TYPE" "OR10A5 WILD-TYPE" "OR10A5 WILD-TYPE"   "OR10A5 MUTATED" 
      TCGA-50-6593       TCGA-50-6594       TCGA-50-6595       TCGA-50-6597 
"OR10A5 WILD-TYPE" "OR10A5 WILD-TYPE" "OR10A5 WILD-TYPE" "OR10A5 WILD-TYPE" 
      TCGA-55-1592       TCGA-55-1594       TCGA-55-1595       TCGA-55-1596 
"OR10A5 WILD-TYPE" "OR10A5 WILD-TYPE" "OR10A5 WILD-TYPE" "OR10A5 WILD-TYPE" 
      TCGA-55-5899       TCGA-55-6543       TCGA-55-6642       TCGA-55-6712 
"OR10A5 WILD-TYPE" "OR10A5 WILD-TYPE" "OR10A5 WILD-TYPE" "OR10A5 WILD-TYPE" 
      TCGA-64-1676       TCGA-64-1677       TCGA-64-1678       TCGA-64-1680 
"OR10A5 WILD-TYPE" "OR10A5 WILD-TYPE" "OR10A5 WILD-TYPE" "OR10A5 WILD-TYPE" 
      TCGA-64-5774       TCGA-64-5775       TCGA-64-5778       TCGA-64-5779 
"OR10A5 WILD-TYPE" "OR10A5 WILD-TYPE" "OR10A5 WILD-TYPE" "OR10A5 WILD-TYPE" 
      TCGA-64-5781       TCGA-64-5815       TCGA-67-3770       TCGA-67-3771 
"OR10A5 WILD-TYPE" "OR10A5 WILD-TYPE" "OR10A5 WILD-TYPE" "OR10A5 WILD-TYPE" 
      TCGA-67-3772       TCGA-67-3773       TCGA-67-3774       TCGA-67-6215 
"OR10A5 WILD-TYPE" "OR10A5 WILD-TYPE" "OR10A5 WILD-TYPE" "OR10A5 WILD-TYPE" 
      TCGA-67-6216       TCGA-67-6217       TCGA-71-6725       TCGA-73-4658 
"OR10A5 WILD-TYPE" "OR10A5 WILD-TYPE" "OR10A5 WILD-TYPE" "OR10A5 WILD-TYPE" 
      TCGA-73-4659       TCGA-73-4662       TCGA-73-4666       TCGA-73-4668 
"OR10A5 WILD-TYPE" "OR10A5 WILD-TYPE" "OR10A5 WILD-TYPE" "OR10A5 WILD-TYPE" 
      TCGA-73-4670       TCGA-73-4675       TCGA-73-4676       TCGA-73-4677 
"OR10A5 WILD-TYPE" "OR10A5 WILD-TYPE" "OR10A5 WILD-TYPE" "OR10A5 WILD-TYPE" 
      TCGA-91-6828       TCGA-91-6829       TCGA-91-6831       TCGA-91-6835 
"OR10A5 WILD-TYPE" "OR10A5 WILD-TYPE" "OR10A5 WILD-TYPE" "OR10A5 WILD-TYPE" 
      TCGA-91-6836 
"OR10A5 WILD-TYPE" 
[1] "hr=" "2.7"
D253V2, continuous
D253V3, binary
[1] "tbl2"
                  cls
clus               [,1] [,2]
  OR10A5 MUTATED      2    3
  OR10A5 WILD-TYPE   91   76
        clus
vv       OR10A5 MUTATED OR10A5 WILD-TYPE
  FEMALE              2               91
  MALE                3               76
D253V4, continuous
D253V5, multiclass
D253V6, multiclass
    clus
vv   OR10A5 MUTATED OR10A5 WILD-TYPE
  T1              1               40
  T2              3              105
  T3              0               14
  T4              1                7
D253V7, multiclass
       clus
vv      OR10A5 MUTATED OR10A5 WILD-TYPE
  N0                 2               93
  N1                 2               35
  N2+N3              0               35
D253V8, multiclass
    clus
vv   OR10A5 MUTATED OR10A5 WILD-TYPE
  M0              3              134
  M1              1                8
  MX              1               21
D253V9, multiclass
     clus
vv    OR10A5 MUTATED OR10A5 WILD-TYPE
  I                2               86
  II               1               32
  III              1               38
  IV               1                8
D253V10, binary
[1] "tbl2"
                  cls
clus               [,1] [,2]
  OR10A5 MUTATED      0    5
  OR10A5 WILD-TYPE   16  151
     clus
vv    OR10A5 MUTATED OR10A5 WILD-TYPE
  NO               0               16
  YES              5              151
D253V11, continuous
D253V12, continuous
[1] "Remove cluster labels:" "OR10A5 MUTATED"        
clus
  OR10A5 MUTATED OR10A5 WILD-TYPE 
               2               80 
      TCGA-05-4384       TCGA-05-4390       TCGA-05-4403       TCGA-05-4405 
"OR10A5 WILD-TYPE" "OR10A5 WILD-TYPE" "OR10A5 WILD-TYPE" "OR10A5 WILD-TYPE" 
      TCGA-05-4410       TCGA-05-4415       TCGA-05-4417       TCGA-05-4424 
"OR10A5 WILD-TYPE" "OR10A5 WILD-TYPE" "OR10A5 WILD-TYPE" "OR10A5 WILD-TYPE" 
      TCGA-05-4427       TCGA-05-4433       TCGA-05-5420       TCGA-05-5423 
"OR10A5 WILD-TYPE" "OR10A5 WILD-TYPE" "OR10A5 WILD-TYPE" "OR10A5 WILD-TYPE" 
      TCGA-05-5425       TCGA-05-5428       TCGA-35-4122       TCGA-35-4123 
"OR10A5 WILD-TYPE" "OR10A5 WILD-TYPE" "OR10A5 WILD-TYPE" "OR10A5 WILD-TYPE" 
      TCGA-35-5375       TCGA-38-4629       TCGA-38-4632       TCGA-44-2655 
"OR10A5 WILD-TYPE" "OR10A5 WILD-TYPE" "OR10A5 WILD-TYPE" "OR10A5 WILD-TYPE" 
      TCGA-44-2656       TCGA-44-2657       TCGA-44-2659       TCGA-44-2662 
"OR10A5 WILD-TYPE" "OR10A5 WILD-TYPE" "OR10A5 WILD-TYPE" "OR10A5 WILD-TYPE" 
      TCGA-44-2668       TCGA-44-3398       TCGA-44-3918       TCGA-44-4112 
"OR10A5 WILD-TYPE" "OR10A5 WILD-TYPE" "OR10A5 WILD-TYPE" "OR10A5 WILD-TYPE" 
      TCGA-44-5645       TCGA-44-6145       TCGA-44-6146       TCGA-44-6147 
"OR10A5 WILD-TYPE" "OR10A5 WILD-TYPE" "OR10A5 WILD-TYPE" "OR10A5 WILD-TYPE" 
      TCGA-44-6148       TCGA-44-6775       TCGA-44-6776       TCGA-44-6777 
"OR10A5 WILD-TYPE" "OR10A5 WILD-TYPE" "OR10A5 WILD-TYPE" "OR10A5 WILD-TYPE" 
      TCGA-44-6779       TCGA-49-4486       TCGA-49-4488       TCGA-49-4494 
"OR10A5 WILD-TYPE" "OR10A5 WILD-TYPE" "OR10A5 WILD-TYPE" "OR10A5 WILD-TYPE" 
      TCGA-49-4505       TCGA-49-4507       TCGA-50-5051       TCGA-50-5072 
"OR10A5 WILD-TYPE" "OR10A5 WILD-TYPE" "OR10A5 WILD-TYPE" "OR10A5 WILD-TYPE" 
      TCGA-50-5939       TCGA-50-5942       TCGA-50-5946       TCGA-50-6590 
"OR10A5 WILD-TYPE" "OR10A5 WILD-TYPE" "OR10A5 WILD-TYPE" "OR10A5 WILD-TYPE" 
      TCGA-50-6594       TCGA-50-6595       TCGA-55-1592       TCGA-55-1595 
"OR10A5 WILD-TYPE" "OR10A5 WILD-TYPE" "OR10A5 WILD-TYPE" "OR10A5 WILD-TYPE" 
      TCGA-55-6543       TCGA-55-6712       TCGA-64-1678       TCGA-64-1680 
"OR10A5 WILD-TYPE" "OR10A5 WILD-TYPE" "OR10A5 WILD-TYPE" "OR10A5 WILD-TYPE" 
      TCGA-64-5774       TCGA-64-5778       TCGA-64-5779       TCGA-64-5781 
"OR10A5 WILD-TYPE" "OR10A5 WILD-TYPE" "OR10A5 WILD-TYPE" "OR10A5 WILD-TYPE" 
      TCGA-64-5815       TCGA-67-6217       TCGA-73-4659       TCGA-73-4662 
"OR10A5 WILD-TYPE" "OR10A5 WILD-TYPE" "OR10A5 WILD-TYPE" "OR10A5 WILD-TYPE" 
      TCGA-73-4666       TCGA-73-4668       TCGA-73-4670       TCGA-73-4675 
"OR10A5 WILD-TYPE" "OR10A5 WILD-TYPE" "OR10A5 WILD-TYPE" "OR10A5 WILD-TYPE" 
      TCGA-73-4676       TCGA-73-4677       TCGA-75-5122       TCGA-75-5125 
"OR10A5 WILD-TYPE" "OR10A5 WILD-TYPE" "OR10A5 WILD-TYPE" "OR10A5 WILD-TYPE" 
      TCGA-75-5126       TCGA-75-5146       TCGA-75-6206       TCGA-75-6207 
"OR10A5 WILD-TYPE" "OR10A5 WILD-TYPE" "OR10A5 WILD-TYPE" "OR10A5 WILD-TYPE" 
      TCGA-80-5611       TCGA-91-6828       TCGA-91-6829       TCGA-91-6835 
"OR10A5 WILD-TYPE" "OR10A5 WILD-TYPE" "OR10A5 WILD-TYPE" "OR10A5 WILD-TYPE" 
D253V13, multiclass
                                             clus
vv                                            OR10A5 MUTATED OR10A5 WILD-TYPE
  CURRENT REFORMED SMOKER FOR < OR = 15 YEARS              2               60
  CURRENT REFORMED SMOKER FOR > 15 YEARS                   1               45
  CURRENT SMOKER                                           1               27
  LIFELONG NON-SMOKER                                      1               23
D253V14, continuous
[1] "Remove cluster labels:" "OR10A5 MUTATED"        
clus
  OR10A5 MUTATED OR10A5 WILD-TYPE 
               2               66 
      TCGA-05-4384       TCGA-05-4390       TCGA-05-4405       TCGA-05-4410 
"OR10A5 WILD-TYPE" "OR10A5 WILD-TYPE" "OR10A5 WILD-TYPE" "OR10A5 WILD-TYPE" 
      TCGA-05-4415       TCGA-05-4417       TCGA-05-4424       TCGA-05-4427 
"OR10A5 WILD-TYPE" "OR10A5 WILD-TYPE" "OR10A5 WILD-TYPE" "OR10A5 WILD-TYPE" 
      TCGA-05-4433       TCGA-05-5420       TCGA-05-5423       TCGA-05-5425 
"OR10A5 WILD-TYPE" "OR10A5 WILD-TYPE" "OR10A5 WILD-TYPE" "OR10A5 WILD-TYPE" 
      TCGA-05-5428       TCGA-35-4122       TCGA-35-4123       TCGA-35-5375 
"OR10A5 WILD-TYPE" "OR10A5 WILD-TYPE" "OR10A5 WILD-TYPE" "OR10A5 WILD-TYPE" 
      TCGA-38-4625       TCGA-38-4626       TCGA-44-2655       TCGA-44-2656 
"OR10A5 WILD-TYPE" "OR10A5 WILD-TYPE" "OR10A5 WILD-TYPE" "OR10A5 WILD-TYPE" 
      TCGA-44-2657       TCGA-44-2659       TCGA-44-2662       TCGA-44-2666 
"OR10A5 WILD-TYPE" "OR10A5 WILD-TYPE" "OR10A5 WILD-TYPE" "OR10A5 WILD-TYPE" 
      TCGA-44-2668       TCGA-44-3396       TCGA-44-3398       TCGA-44-3918 
"OR10A5 WILD-TYPE" "OR10A5 WILD-TYPE" "OR10A5 WILD-TYPE" "OR10A5 WILD-TYPE" 
      TCGA-44-4112       TCGA-44-5645       TCGA-44-6144       TCGA-44-6145 
"OR10A5 WILD-TYPE" "OR10A5 WILD-TYPE" "OR10A5 WILD-TYPE" "OR10A5 WILD-TYPE" 
      TCGA-44-6147       TCGA-44-6148       TCGA-44-6774       TCGA-44-6775 
"OR10A5 WILD-TYPE" "OR10A5 WILD-TYPE" "OR10A5 WILD-TYPE" "OR10A5 WILD-TYPE" 
      TCGA-44-6776       TCGA-44-6777       TCGA-44-6779       TCGA-49-4486 
"OR10A5 WILD-TYPE" "OR10A5 WILD-TYPE" "OR10A5 WILD-TYPE" "OR10A5 WILD-TYPE" 
      TCGA-49-4494       TCGA-49-4505       TCGA-55-1592       TCGA-55-1594 
"OR10A5 WILD-TYPE" "OR10A5 WILD-TYPE" "OR10A5 WILD-TYPE" "OR10A5 WILD-TYPE" 
      TCGA-55-1595       TCGA-55-1596       TCGA-55-5899       TCGA-55-6642 
"OR10A5 WILD-TYPE" "OR10A5 WILD-TYPE" "OR10A5 WILD-TYPE" "OR10A5 WILD-TYPE" 
      TCGA-55-6712       TCGA-64-1677       TCGA-64-1678       TCGA-64-1680 
"OR10A5 WILD-TYPE" "OR10A5 WILD-TYPE" "OR10A5 WILD-TYPE" "OR10A5 WILD-TYPE" 
      TCGA-64-5774       TCGA-64-5775       TCGA-64-5778       TCGA-64-5779 
"OR10A5 WILD-TYPE" "OR10A5 WILD-TYPE" "OR10A5 WILD-TYPE" "OR10A5 WILD-TYPE" 
      TCGA-64-5781       TCGA-73-4659       TCGA-73-4662       TCGA-73-4666 
"OR10A5 WILD-TYPE" "OR10A5 WILD-TYPE" "OR10A5 WILD-TYPE" "OR10A5 WILD-TYPE" 
      TCGA-73-4668       TCGA-73-4670       TCGA-73-4675       TCGA-73-4676 
"OR10A5 WILD-TYPE" "OR10A5 WILD-TYPE" "OR10A5 WILD-TYPE" "OR10A5 WILD-TYPE" 
      TCGA-91-6829       TCGA-91-6836 
"OR10A5 WILD-TYPE" "OR10A5 WILD-TYPE" 

Clustering(254) Variable = DACH2 MUTATION ANALYSIS
D254V1, survival
                 sevent
clus2              0  1
  DACH2 MUTATED    3  5
  DACH2 WILD-TYPE 96 45
  DACH2 MUTATED DACH2 WILD-TYPE 
              8             141 
  DACH2 MUTATED DACH2 WILD-TYPE 
              5              45 
$`DACH2 MUTATED`
TCGA-38-4625 TCGA-38-4628 TCGA-50-6595 TCGA-55-1592 TCGA-64-1677 TCGA-64-5778 
       47.61        49.02         6.21        23.05        20.65        30.44 
TCGA-64-5779 TCGA-73-4658 
       16.67        52.57 

$`DACH2 WILD-TYPE`
TCGA-05-4249 TCGA-05-4250 TCGA-05-4382 TCGA-05-4384 TCGA-05-4390 TCGA-05-4396 
       38.07         3.98        19.92        14.01        37.02         9.96 
TCGA-05-4397 TCGA-05-4398 TCGA-05-4402 TCGA-05-4405 TCGA-05-4415 TCGA-05-4417 
       24.03        47.05         8.02        20.05         2.96        14.93 
TCGA-05-4418 TCGA-05-4420 TCGA-05-4424 TCGA-05-4426 TCGA-05-4427 TCGA-05-4430 
        8.98        29.95        30.02        26.01        26.01        25.02 
TCGA-05-4432 TCGA-05-4433 TCGA-05-4434 TCGA-05-5420 TCGA-05-5423 TCGA-05-5425 
       25.02        24.00        15.02         1.02         4.96         2.96 
TCGA-05-5429 TCGA-05-5715 TCGA-35-3615 TCGA-35-4122 TCGA-35-4123 TCGA-35-5375 
        0.99         2.04         0.46         7.36         5.95         8.68 
TCGA-38-4626 TCGA-38-4627 TCGA-38-4629 TCGA-38-4630 TCGA-38-4631 TCGA-38-4632 
       85.32        37.71        28.37        35.28        11.64        44.61 
TCGA-38-6178 TCGA-44-2655 TCGA-44-2656 TCGA-44-2657 TCGA-44-2659 TCGA-44-2661 
        5.19        18.87        19.10        13.15        17.39         3.39 
TCGA-44-2662 TCGA-44-2665 TCGA-44-2666 TCGA-44-2668 TCGA-44-3396 TCGA-44-3398 
       15.78        13.15         3.19         8.09        10.22         8.32 
TCGA-44-3918 TCGA-44-3919 TCGA-44-4112 TCGA-44-5643 TCGA-44-5645 TCGA-44-6144 
        6.44         6.21         4.60         3.48         6.84         0.30 
TCGA-44-6145 TCGA-44-6146 TCGA-44-6147 TCGA-44-6148 TCGA-44-6774 TCGA-44-6775 
        3.35         9.93         7.76         3.12         5.42         2.70 
TCGA-44-6776 TCGA-44-6777 TCGA-44-6778 TCGA-44-6779 TCGA-49-4486 TCGA-49-4487 
       63.72        32.45        36.49        16.41        76.21        28.11 
TCGA-49-4488 TCGA-49-4490 TCGA-49-4494 TCGA-49-4501 TCGA-49-4505 TCGA-49-4506 
       28.57        12.66        35.54        46.72        14.07        32.84 
TCGA-49-4507 TCGA-49-4510 TCGA-49-4512 TCGA-49-4514 TCGA-49-6742 TCGA-49-6743 
        8.81        29.46        29.75        43.20        15.02        12.13 
TCGA-49-6744 TCGA-49-6745 TCGA-50-5044 TCGA-50-5045 TCGA-50-5049 TCGA-50-5051 
       12.99         4.93        20.48        71.47        48.82        14.96 
TCGA-50-5055 TCGA-50-5066 TCGA-50-5068 TCGA-50-5072 TCGA-50-5930 TCGA-50-5931 
       25.81         9.76        49.28         8.05         9.27         8.78 
TCGA-50-5932 TCGA-50-5933 TCGA-50-5935 TCGA-50-5936 TCGA-50-5939 TCGA-50-5941 
       35.87        77.88        21.47         8.45        15.12         9.37 
TCGA-50-5942 TCGA-50-5944 TCGA-50-5946 TCGA-50-6590 TCGA-50-6591 TCGA-50-6592 
        4.44        12.26        11.47        42.31         3.88        25.51 
TCGA-50-6593 TCGA-50-6594 TCGA-50-6597 TCGA-55-1594 TCGA-55-1595 TCGA-55-1596 
       11.05        12.16        33.37        38.73        48.62        45.17 
TCGA-55-5899 TCGA-55-6543 TCGA-55-6642 TCGA-55-6712 TCGA-64-1676 TCGA-64-1678 
        2.86         0.07        32.61         0.79        56.81        39.09 
TCGA-64-1680 TCGA-64-5774 TCGA-64-5775 TCGA-64-5781 TCGA-64-5815 TCGA-67-3770 
       37.02        83.84         0.10        39.52         7.33         0.99 
TCGA-67-3771 TCGA-67-3772 TCGA-67-3773 TCGA-67-3774 TCGA-67-6215 TCGA-67-6216 
        1.97         0.59         2.04         0.59         0.89         0.69 
TCGA-67-6217 TCGA-71-6725 TCGA-73-4659 TCGA-73-4662 TCGA-73-4666 TCGA-73-4668 
       13.87         2.01        23.38        29.95        20.28        15.35 
TCGA-73-4670 TCGA-73-4675 TCGA-73-4676 TCGA-73-4677 TCGA-91-6828 TCGA-91-6829 
        0.46         1.32         4.01         1.25         1.22        41.33 
TCGA-91-6831 TCGA-91-6835 TCGA-91-6836 
        1.28         1.15         0.36 

  DACH2 MUTATED DACH2 WILD-TYPE 
           6.21            0.07 
  DACH2 MUTATED DACH2 WILD-TYPE 
          52.57           85.32 
  DACH2 MUTATED DACH2 WILD-TYPE 
         26.745          12.990 
[1] "6.2 - 52.6 (26.7)" "0.1 - 85.3 (13.0)"
     TCGA-05-4249      TCGA-05-4250      TCGA-05-4382      TCGA-05-4384 
"DACH2 WILD-TYPE" "DACH2 WILD-TYPE" "DACH2 WILD-TYPE" "DACH2 WILD-TYPE" 
     TCGA-05-4390      TCGA-05-4396      TCGA-05-4397      TCGA-05-4398 
"DACH2 WILD-TYPE" "DACH2 WILD-TYPE" "DACH2 WILD-TYPE" "DACH2 WILD-TYPE" 
     TCGA-05-4402      TCGA-05-4405      TCGA-05-4415      TCGA-05-4417 
"DACH2 WILD-TYPE" "DACH2 WILD-TYPE" "DACH2 WILD-TYPE" "DACH2 WILD-TYPE" 
     TCGA-05-4418      TCGA-05-4420      TCGA-05-4424      TCGA-05-4426 
"DACH2 WILD-TYPE" "DACH2 WILD-TYPE" "DACH2 WILD-TYPE" "DACH2 WILD-TYPE" 
     TCGA-05-4427      TCGA-05-4430      TCGA-05-4432      TCGA-05-4433 
"DACH2 WILD-TYPE" "DACH2 WILD-TYPE" "DACH2 WILD-TYPE" "DACH2 WILD-TYPE" 
     TCGA-05-4434      TCGA-05-5420      TCGA-05-5423      TCGA-05-5425 
"DACH2 WILD-TYPE" "DACH2 WILD-TYPE" "DACH2 WILD-TYPE" "DACH2 WILD-TYPE" 
     TCGA-05-5429      TCGA-05-5715      TCGA-35-3615      TCGA-35-4122 
"DACH2 WILD-TYPE" "DACH2 WILD-TYPE" "DACH2 WILD-TYPE" "DACH2 WILD-TYPE" 
     TCGA-35-4123      TCGA-35-5375      TCGA-38-4625      TCGA-38-4626 
"DACH2 WILD-TYPE" "DACH2 WILD-TYPE"   "DACH2 MUTATED" "DACH2 WILD-TYPE" 
     TCGA-38-4627      TCGA-38-4628      TCGA-38-4629      TCGA-38-4630 
"DACH2 WILD-TYPE"   "DACH2 MUTATED" "DACH2 WILD-TYPE" "DACH2 WILD-TYPE" 
     TCGA-38-4631      TCGA-38-4632      TCGA-38-6178      TCGA-44-2655 
"DACH2 WILD-TYPE" "DACH2 WILD-TYPE" "DACH2 WILD-TYPE" "DACH2 WILD-TYPE" 
     TCGA-44-2656      TCGA-44-2657      TCGA-44-2659      TCGA-44-2661 
"DACH2 WILD-TYPE" "DACH2 WILD-TYPE" "DACH2 WILD-TYPE" "DACH2 WILD-TYPE" 
     TCGA-44-2662      TCGA-44-2665      TCGA-44-2666      TCGA-44-2668 
"DACH2 WILD-TYPE" "DACH2 WILD-TYPE" "DACH2 WILD-TYPE" "DACH2 WILD-TYPE" 
     TCGA-44-3396      TCGA-44-3398      TCGA-44-3918      TCGA-44-3919 
"DACH2 WILD-TYPE" "DACH2 WILD-TYPE" "DACH2 WILD-TYPE" "DACH2 WILD-TYPE" 
     TCGA-44-4112      TCGA-44-5643      TCGA-44-5645      TCGA-44-6144 
"DACH2 WILD-TYPE" "DACH2 WILD-TYPE" "DACH2 WILD-TYPE" "DACH2 WILD-TYPE" 
     TCGA-44-6145      TCGA-44-6146      TCGA-44-6147      TCGA-44-6148 
"DACH2 WILD-TYPE" "DACH2 WILD-TYPE" "DACH2 WILD-TYPE" "DACH2 WILD-TYPE" 
     TCGA-44-6774      TCGA-44-6775      TCGA-44-6776      TCGA-44-6777 
"DACH2 WILD-TYPE" "DACH2 WILD-TYPE" "DACH2 WILD-TYPE" "DACH2 WILD-TYPE" 
     TCGA-44-6778      TCGA-44-6779      TCGA-49-4486      TCGA-49-4487 
"DACH2 WILD-TYPE" "DACH2 WILD-TYPE" "DACH2 WILD-TYPE" "DACH2 WILD-TYPE" 
     TCGA-49-4488      TCGA-49-4490      TCGA-49-4494      TCGA-49-4501 
"DACH2 WILD-TYPE" "DACH2 WILD-TYPE" "DACH2 WILD-TYPE" "DACH2 WILD-TYPE" 
     TCGA-49-4505      TCGA-49-4506      TCGA-49-4507      TCGA-49-4510 
"DACH2 WILD-TYPE" "DACH2 WILD-TYPE" "DACH2 WILD-TYPE" "DACH2 WILD-TYPE" 
     TCGA-49-4512      TCGA-49-4514      TCGA-49-6742      TCGA-49-6743 
"DACH2 WILD-TYPE" "DACH2 WILD-TYPE" "DACH2 WILD-TYPE" "DACH2 WILD-TYPE" 
     TCGA-49-6744      TCGA-49-6745      TCGA-50-5044      TCGA-50-5045 
"DACH2 WILD-TYPE" "DACH2 WILD-TYPE" "DACH2 WILD-TYPE" "DACH2 WILD-TYPE" 
     TCGA-50-5049      TCGA-50-5051      TCGA-50-5055      TCGA-50-5066 
"DACH2 WILD-TYPE" "DACH2 WILD-TYPE" "DACH2 WILD-TYPE" "DACH2 WILD-TYPE" 
     TCGA-50-5068      TCGA-50-5072      TCGA-50-5930      TCGA-50-5931 
"DACH2 WILD-TYPE" "DACH2 WILD-TYPE" "DACH2 WILD-TYPE" "DACH2 WILD-TYPE" 
     TCGA-50-5932      TCGA-50-5933      TCGA-50-5935      TCGA-50-5936 
"DACH2 WILD-TYPE" "DACH2 WILD-TYPE" "DACH2 WILD-TYPE" "DACH2 WILD-TYPE" 
     TCGA-50-5939      TCGA-50-5941      TCGA-50-5942      TCGA-50-5944 
"DACH2 WILD-TYPE" "DACH2 WILD-TYPE" "DACH2 WILD-TYPE" "DACH2 WILD-TYPE" 
     TCGA-50-5946      TCGA-50-6590      TCGA-50-6591      TCGA-50-6592 
"DACH2 WILD-TYPE" "DACH2 WILD-TYPE" "DACH2 WILD-TYPE" "DACH2 WILD-TYPE" 
     TCGA-50-6593      TCGA-50-6594      TCGA-50-6595      TCGA-50-6597 
"DACH2 WILD-TYPE" "DACH2 WILD-TYPE"   "DACH2 MUTATED" "DACH2 WILD-TYPE" 
     TCGA-55-1592      TCGA-55-1594      TCGA-55-1595      TCGA-55-1596 
  "DACH2 MUTATED" "DACH2 WILD-TYPE" "DACH2 WILD-TYPE" "DACH2 WILD-TYPE" 
     TCGA-55-5899      TCGA-55-6543      TCGA-55-6642      TCGA-55-6712 
"DACH2 WILD-TYPE" "DACH2 WILD-TYPE" "DACH2 WILD-TYPE" "DACH2 WILD-TYPE" 
     TCGA-64-1676      TCGA-64-1677      TCGA-64-1678      TCGA-64-1680 
"DACH2 WILD-TYPE"   "DACH2 MUTATED" "DACH2 WILD-TYPE" "DACH2 WILD-TYPE" 
     TCGA-64-5774      TCGA-64-5775      TCGA-64-5778      TCGA-64-5779 
"DACH2 WILD-TYPE" "DACH2 WILD-TYPE"   "DACH2 MUTATED"   "DACH2 MUTATED" 
     TCGA-64-5781      TCGA-64-5815      TCGA-67-3770      TCGA-67-3771 
"DACH2 WILD-TYPE" "DACH2 WILD-TYPE" "DACH2 WILD-TYPE" "DACH2 WILD-TYPE" 
     TCGA-67-3772      TCGA-67-3773      TCGA-67-3774      TCGA-67-6215 
"DACH2 WILD-TYPE" "DACH2 WILD-TYPE" "DACH2 WILD-TYPE" "DACH2 WILD-TYPE" 
     TCGA-67-6216      TCGA-67-6217      TCGA-71-6725      TCGA-73-4658 
"DACH2 WILD-TYPE" "DACH2 WILD-TYPE" "DACH2 WILD-TYPE"   "DACH2 MUTATED" 
     TCGA-73-4659      TCGA-73-4662      TCGA-73-4666      TCGA-73-4668 
"DACH2 WILD-TYPE" "DACH2 WILD-TYPE" "DACH2 WILD-TYPE" "DACH2 WILD-TYPE" 
     TCGA-73-4670      TCGA-73-4675      TCGA-73-4676      TCGA-73-4677 
"DACH2 WILD-TYPE" "DACH2 WILD-TYPE" "DACH2 WILD-TYPE" "DACH2 WILD-TYPE" 
     TCGA-91-6828      TCGA-91-6829      TCGA-91-6831      TCGA-91-6835 
"DACH2 WILD-TYPE" "DACH2 WILD-TYPE" "DACH2 WILD-TYPE" "DACH2 WILD-TYPE" 
     TCGA-91-6836 
"DACH2 WILD-TYPE" 
     TCGA-05-4249      TCGA-05-4250      TCGA-05-4382      TCGA-05-4384 
"DACH2 WILD-TYPE" "DACH2 WILD-TYPE" "DACH2 WILD-TYPE" "DACH2 WILD-TYPE" 
     TCGA-05-4390      TCGA-05-4396      TCGA-05-4397      TCGA-05-4398 
"DACH2 WILD-TYPE" "DACH2 WILD-TYPE" "DACH2 WILD-TYPE" "DACH2 WILD-TYPE" 
     TCGA-05-4402      TCGA-05-4405      TCGA-05-4415      TCGA-05-4417 
"DACH2 WILD-TYPE" "DACH2 WILD-TYPE" "DACH2 WILD-TYPE" "DACH2 WILD-TYPE" 
     TCGA-05-4418      TCGA-05-4420      TCGA-05-4424      TCGA-05-4426 
"DACH2 WILD-TYPE" "DACH2 WILD-TYPE" "DACH2 WILD-TYPE" "DACH2 WILD-TYPE" 
     TCGA-05-4427      TCGA-05-4430      TCGA-05-4432      TCGA-05-4433 
"DACH2 WILD-TYPE" "DACH2 WILD-TYPE" "DACH2 WILD-TYPE" "DACH2 WILD-TYPE" 
     TCGA-05-4434      TCGA-05-5420      TCGA-05-5423      TCGA-05-5425 
"DACH2 WILD-TYPE" "DACH2 WILD-TYPE" "DACH2 WILD-TYPE" "DACH2 WILD-TYPE" 
     TCGA-05-5429      TCGA-05-5715      TCGA-35-3615      TCGA-35-4122 
"DACH2 WILD-TYPE" "DACH2 WILD-TYPE" "DACH2 WILD-TYPE" "DACH2 WILD-TYPE" 
     TCGA-35-4123      TCGA-35-5375      TCGA-38-4625      TCGA-38-4626 
"DACH2 WILD-TYPE" "DACH2 WILD-TYPE"   "DACH2 MUTATED" "DACH2 WILD-TYPE" 
     TCGA-38-4627      TCGA-38-4628      TCGA-38-4629      TCGA-38-4630 
"DACH2 WILD-TYPE"   "DACH2 MUTATED" "DACH2 WILD-TYPE" "DACH2 WILD-TYPE" 
     TCGA-38-4631      TCGA-38-4632      TCGA-38-6178      TCGA-44-2655 
"DACH2 WILD-TYPE" "DACH2 WILD-TYPE" "DACH2 WILD-TYPE" "DACH2 WILD-TYPE" 
     TCGA-44-2656      TCGA-44-2657      TCGA-44-2659      TCGA-44-2661 
"DACH2 WILD-TYPE" "DACH2 WILD-TYPE" "DACH2 WILD-TYPE" "DACH2 WILD-TYPE" 
     TCGA-44-2662      TCGA-44-2665      TCGA-44-2666      TCGA-44-2668 
"DACH2 WILD-TYPE" "DACH2 WILD-TYPE" "DACH2 WILD-TYPE" "DACH2 WILD-TYPE" 
     TCGA-44-3396      TCGA-44-3398      TCGA-44-3918      TCGA-44-3919 
"DACH2 WILD-TYPE" "DACH2 WILD-TYPE" "DACH2 WILD-TYPE" "DACH2 WILD-TYPE" 
     TCGA-44-4112      TCGA-44-5643      TCGA-44-5645      TCGA-44-6144 
"DACH2 WILD-TYPE" "DACH2 WILD-TYPE" "DACH2 WILD-TYPE" "DACH2 WILD-TYPE" 
     TCGA-44-6145      TCGA-44-6146      TCGA-44-6147      TCGA-44-6148 
"DACH2 WILD-TYPE" "DACH2 WILD-TYPE" "DACH2 WILD-TYPE" "DACH2 WILD-TYPE" 
     TCGA-44-6774      TCGA-44-6775      TCGA-44-6776      TCGA-44-6777 
"DACH2 WILD-TYPE" "DACH2 WILD-TYPE" "DACH2 WILD-TYPE" "DACH2 WILD-TYPE" 
     TCGA-44-6778      TCGA-44-6779      TCGA-49-4486      TCGA-49-4487 
"DACH2 WILD-TYPE" "DACH2 WILD-TYPE" "DACH2 WILD-TYPE" "DACH2 WILD-TYPE" 
     TCGA-49-4488      TCGA-49-4490      TCGA-49-4494      TCGA-49-4501 
"DACH2 WILD-TYPE" "DACH2 WILD-TYPE" "DACH2 WILD-TYPE" "DACH2 WILD-TYPE" 
     TCGA-49-4505      TCGA-49-4506      TCGA-49-4507      TCGA-49-4510 
"DACH2 WILD-TYPE" "DACH2 WILD-TYPE" "DACH2 WILD-TYPE" "DACH2 WILD-TYPE" 
     TCGA-49-4512      TCGA-49-4514      TCGA-49-6742      TCGA-49-6743 
"DACH2 WILD-TYPE" "DACH2 WILD-TYPE" "DACH2 WILD-TYPE" "DACH2 WILD-TYPE" 
     TCGA-49-6744      TCGA-49-6745      TCGA-50-5044      TCGA-50-5045 
"DACH2 WILD-TYPE" "DACH2 WILD-TYPE" "DACH2 WILD-TYPE" "DACH2 WILD-TYPE" 
     TCGA-50-5049      TCGA-50-5051      TCGA-50-5055      TCGA-50-5066 
"DACH2 WILD-TYPE" "DACH2 WILD-TYPE" "DACH2 WILD-TYPE" "DACH2 WILD-TYPE" 
     TCGA-50-5068      TCGA-50-5072      TCGA-50-5930      TCGA-50-5931 
"DACH2 WILD-TYPE" "DACH2 WILD-TYPE" "DACH2 WILD-TYPE" "DACH2 WILD-TYPE" 
     TCGA-50-5932      TCGA-50-5933      TCGA-50-5935      TCGA-50-5936 
"DACH2 WILD-TYPE" "DACH2 WILD-TYPE" "DACH2 WILD-TYPE" "DACH2 WILD-TYPE" 
     TCGA-50-5939      TCGA-50-5941      TCGA-50-5942      TCGA-50-5944 
"DACH2 WILD-TYPE" "DACH2 WILD-TYPE" "DACH2 WILD-TYPE" "DACH2 WILD-TYPE" 
     TCGA-50-5946      TCGA-50-6590      TCGA-50-6591      TCGA-50-6592 
"DACH2 WILD-TYPE" "DACH2 WILD-TYPE" "DACH2 WILD-TYPE" "DACH2 WILD-TYPE" 
     TCGA-50-6593      TCGA-50-6594      TCGA-50-6595      TCGA-50-6597 
"DACH2 WILD-TYPE" "DACH2 WILD-TYPE"   "DACH2 MUTATED" "DACH2 WILD-TYPE" 
     TCGA-55-1592      TCGA-55-1594      TCGA-55-1595      TCGA-55-1596 
  "DACH2 MUTATED" "DACH2 WILD-TYPE" "DACH2 WILD-TYPE" "DACH2 WILD-TYPE" 
     TCGA-55-5899      TCGA-55-6543      TCGA-55-6642      TCGA-55-6712 
"DACH2 WILD-TYPE" "DACH2 WILD-TYPE" "DACH2 WILD-TYPE" "DACH2 WILD-TYPE" 
     TCGA-64-1676      TCGA-64-1677      TCGA-64-1678      TCGA-64-1680 
"DACH2 WILD-TYPE"   "DACH2 MUTATED" "DACH2 WILD-TYPE" "DACH2 WILD-TYPE" 
     TCGA-64-5774      TCGA-64-5775      TCGA-64-5778      TCGA-64-5779 
"DACH2 WILD-TYPE" "DACH2 WILD-TYPE"   "DACH2 MUTATED"   "DACH2 MUTATED" 
     TCGA-64-5781      TCGA-64-5815      TCGA-67-3770      TCGA-67-3771 
"DACH2 WILD-TYPE" "DACH2 WILD-TYPE" "DACH2 WILD-TYPE" "DACH2 WILD-TYPE" 
     TCGA-67-3772      TCGA-67-3773      TCGA-67-3774      TCGA-67-6215 
"DACH2 WILD-TYPE" "DACH2 WILD-TYPE" "DACH2 WILD-TYPE" "DACH2 WILD-TYPE" 
     TCGA-67-6216      TCGA-67-6217      TCGA-71-6725      TCGA-73-4658 
"DACH2 WILD-TYPE" "DACH2 WILD-TYPE" "DACH2 WILD-TYPE"   "DACH2 MUTATED" 
     TCGA-73-4659      TCGA-73-4662      TCGA-73-4666      TCGA-73-4668 
"DACH2 WILD-TYPE" "DACH2 WILD-TYPE" "DACH2 WILD-TYPE" "DACH2 WILD-TYPE" 
     TCGA-73-4670      TCGA-73-4675      TCGA-73-4676      TCGA-73-4677 
"DACH2 WILD-TYPE" "DACH2 WILD-TYPE" "DACH2 WILD-TYPE" "DACH2 WILD-TYPE" 
     TCGA-91-6828      TCGA-91-6829      TCGA-91-6831      TCGA-91-6835 
"DACH2 WILD-TYPE" "DACH2 WILD-TYPE" "DACH2 WILD-TYPE" "DACH2 WILD-TYPE" 
     TCGA-91-6836 
"DACH2 WILD-TYPE" 
     TCGA-05-4249      TCGA-05-4250      TCGA-05-4382      TCGA-05-4384 
"DACH2 WILD-TYPE" "DACH2 WILD-TYPE" "DACH2 WILD-TYPE" "DACH2 WILD-TYPE" 
     TCGA-05-4390      TCGA-05-4396      TCGA-05-4397      TCGA-05-4398 
"DACH2 WILD-TYPE" "DACH2 WILD-TYPE" "DACH2 WILD-TYPE" "DACH2 WILD-TYPE" 
     TCGA-05-4402      TCGA-05-4405      TCGA-05-4415      TCGA-05-4417 
"DACH2 WILD-TYPE" "DACH2 WILD-TYPE" "DACH2 WILD-TYPE" "DACH2 WILD-TYPE" 
     TCGA-05-4418      TCGA-05-4420      TCGA-05-4424      TCGA-05-4426 
"DACH2 WILD-TYPE" "DACH2 WILD-TYPE" "DACH2 WILD-TYPE" "DACH2 WILD-TYPE" 
     TCGA-05-4427      TCGA-05-4430      TCGA-05-4432      TCGA-05-4433 
"DACH2 WILD-TYPE" "DACH2 WILD-TYPE" "DACH2 WILD-TYPE" "DACH2 WILD-TYPE" 
     TCGA-05-4434      TCGA-05-5420      TCGA-05-5423      TCGA-05-5425 
"DACH2 WILD-TYPE" "DACH2 WILD-TYPE" "DACH2 WILD-TYPE" "DACH2 WILD-TYPE" 
     TCGA-05-5429      TCGA-05-5715      TCGA-35-3615      TCGA-35-4122 
"DACH2 WILD-TYPE" "DACH2 WILD-TYPE" "DACH2 WILD-TYPE" "DACH2 WILD-TYPE" 
     TCGA-35-4123      TCGA-35-5375      TCGA-38-4625      TCGA-38-4626 
"DACH2 WILD-TYPE" "DACH2 WILD-TYPE"   "DACH2 MUTATED" "DACH2 WILD-TYPE" 
     TCGA-38-4627      TCGA-38-4628      TCGA-38-4629      TCGA-38-4630 
"DACH2 WILD-TYPE"   "DACH2 MUTATED" "DACH2 WILD-TYPE" "DACH2 WILD-TYPE" 
     TCGA-38-4631      TCGA-38-4632      TCGA-38-6178      TCGA-44-2655 
"DACH2 WILD-TYPE" "DACH2 WILD-TYPE" "DACH2 WILD-TYPE" "DACH2 WILD-TYPE" 
     TCGA-44-2656      TCGA-44-2657      TCGA-44-2659      TCGA-44-2661 
"DACH2 WILD-TYPE" "DACH2 WILD-TYPE" "DACH2 WILD-TYPE" "DACH2 WILD-TYPE" 
     TCGA-44-2662      TCGA-44-2665      TCGA-44-2666      TCGA-44-2668 
"DACH2 WILD-TYPE" "DACH2 WILD-TYPE" "DACH2 WILD-TYPE" "DACH2 WILD-TYPE" 
     TCGA-44-3396      TCGA-44-3398      TCGA-44-3918      TCGA-44-3919 
"DACH2 WILD-TYPE" "DACH2 WILD-TYPE" "DACH2 WILD-TYPE" "DACH2 WILD-TYPE" 
     TCGA-44-4112      TCGA-44-5643      TCGA-44-5645      TCGA-44-6144 
"DACH2 WILD-TYPE" "DACH2 WILD-TYPE" "DACH2 WILD-TYPE" "DACH2 WILD-TYPE" 
     TCGA-44-6145      TCGA-44-6146      TCGA-44-6147      TCGA-44-6148 
"DACH2 WILD-TYPE" "DACH2 WILD-TYPE" "DACH2 WILD-TYPE" "DACH2 WILD-TYPE" 
     TCGA-44-6774      TCGA-44-6775      TCGA-44-6776      TCGA-44-6777 
"DACH2 WILD-TYPE" "DACH2 WILD-TYPE" "DACH2 WILD-TYPE" "DACH2 WILD-TYPE" 
     TCGA-44-6778      TCGA-44-6779      TCGA-49-4486      TCGA-49-4487 
"DACH2 WILD-TYPE" "DACH2 WILD-TYPE" "DACH2 WILD-TYPE" "DACH2 WILD-TYPE" 
     TCGA-49-4488      TCGA-49-4490      TCGA-49-4494      TCGA-49-4501 
"DACH2 WILD-TYPE" "DACH2 WILD-TYPE" "DACH2 WILD-TYPE" "DACH2 WILD-TYPE" 
     TCGA-49-4505      TCGA-49-4506      TCGA-49-4507      TCGA-49-4510 
"DACH2 WILD-TYPE" "DACH2 WILD-TYPE" "DACH2 WILD-TYPE" "DACH2 WILD-TYPE" 
     TCGA-49-4512      TCGA-49-4514      TCGA-49-6742      TCGA-49-6743 
"DACH2 WILD-TYPE" "DACH2 WILD-TYPE" "DACH2 WILD-TYPE" "DACH2 WILD-TYPE" 
     TCGA-49-6744      TCGA-49-6745      TCGA-50-5044      TCGA-50-5045 
"DACH2 WILD-TYPE" "DACH2 WILD-TYPE" "DACH2 WILD-TYPE" "DACH2 WILD-TYPE" 
     TCGA-50-5049      TCGA-50-5051      TCGA-50-5055      TCGA-50-5066 
"DACH2 WILD-TYPE" "DACH2 WILD-TYPE" "DACH2 WILD-TYPE" "DACH2 WILD-TYPE" 
     TCGA-50-5068      TCGA-50-5072      TCGA-50-5930      TCGA-50-5931 
"DACH2 WILD-TYPE" "DACH2 WILD-TYPE" "DACH2 WILD-TYPE" "DACH2 WILD-TYPE" 
     TCGA-50-5932      TCGA-50-5933      TCGA-50-5935      TCGA-50-5936 
"DACH2 WILD-TYPE" "DACH2 WILD-TYPE" "DACH2 WILD-TYPE" "DACH2 WILD-TYPE" 
     TCGA-50-5939      TCGA-50-5941      TCGA-50-5942      TCGA-50-5944 
"DACH2 WILD-TYPE" "DACH2 WILD-TYPE" "DACH2 WILD-TYPE" "DACH2 WILD-TYPE" 
     TCGA-50-5946      TCGA-50-6590      TCGA-50-6591      TCGA-50-6592 
"DACH2 WILD-TYPE" "DACH2 WILD-TYPE" "DACH2 WILD-TYPE" "DACH2 WILD-TYPE" 
     TCGA-50-6593      TCGA-50-6594      TCGA-50-6595      TCGA-50-6597 
"DACH2 WILD-TYPE" "DACH2 WILD-TYPE"   "DACH2 MUTATED" "DACH2 WILD-TYPE" 
     TCGA-55-1592      TCGA-55-1594      TCGA-55-1595      TCGA-55-1596 
  "DACH2 MUTATED" "DACH2 WILD-TYPE" "DACH2 WILD-TYPE" "DACH2 WILD-TYPE" 
     TCGA-55-5899      TCGA-55-6543      TCGA-55-6642      TCGA-55-6712 
"DACH2 WILD-TYPE" "DACH2 WILD-TYPE" "DACH2 WILD-TYPE" "DACH2 WILD-TYPE" 
     TCGA-64-1676      TCGA-64-1677      TCGA-64-1678      TCGA-64-1680 
"DACH2 WILD-TYPE"   "DACH2 MUTATED" "DACH2 WILD-TYPE" "DACH2 WILD-TYPE" 
     TCGA-64-5774      TCGA-64-5775      TCGA-64-5778      TCGA-64-5779 
"DACH2 WILD-TYPE" "DACH2 WILD-TYPE"   "DACH2 MUTATED"   "DACH2 MUTATED" 
     TCGA-64-5781      TCGA-64-5815      TCGA-67-3770      TCGA-67-3771 
"DACH2 WILD-TYPE" "DACH2 WILD-TYPE" "DACH2 WILD-TYPE" "DACH2 WILD-TYPE" 
     TCGA-67-3772      TCGA-67-3773      TCGA-67-3774      TCGA-67-6215 
"DACH2 WILD-TYPE" "DACH2 WILD-TYPE" "DACH2 WILD-TYPE" "DACH2 WILD-TYPE" 
     TCGA-67-6216      TCGA-67-6217      TCGA-71-6725      TCGA-73-4658 
"DACH2 WILD-TYPE" "DACH2 WILD-TYPE" "DACH2 WILD-TYPE"   "DACH2 MUTATED" 
     TCGA-73-4659      TCGA-73-4662      TCGA-73-4666      TCGA-73-4668 
"DACH2 WILD-TYPE" "DACH2 WILD-TYPE" "DACH2 WILD-TYPE" "DACH2 WILD-TYPE" 
     TCGA-73-4670      TCGA-73-4675      TCGA-73-4676      TCGA-73-4677 
"DACH2 WILD-TYPE" "DACH2 WILD-TYPE" "DACH2 WILD-TYPE" "DACH2 WILD-TYPE" 
     TCGA-91-6828      TCGA-91-6829      TCGA-91-6831      TCGA-91-6835 
"DACH2 WILD-TYPE" "DACH2 WILD-TYPE" "DACH2 WILD-TYPE" "DACH2 WILD-TYPE" 
     TCGA-91-6836 
"DACH2 WILD-TYPE" 
[1] "hr=" "1.1"
D254V2, continuous
D254V3, binary
[1] "tbl2"
                 cls
clus              [,1] [,2]
  DACH2 MUTATED      5    4
  DACH2 WILD-TYPE   88   75
        clus
vv       DACH2 MUTATED DACH2 WILD-TYPE
  FEMALE             5              88
  MALE               4              75
D254V4, continuous
[1] "Remove cluster labels:" "DACH2 MUTATED"         
clus
  DACH2 MUTATED DACH2 WILD-TYPE 
              2              10 
     TCGA-35-4122      TCGA-35-4123      TCGA-35-5375      TCGA-71-6725 
"DACH2 WILD-TYPE" "DACH2 WILD-TYPE" "DACH2 WILD-TYPE" "DACH2 WILD-TYPE" 
     TCGA-73-4659      TCGA-73-4662      TCGA-73-4666      TCGA-73-4668 
"DACH2 WILD-TYPE" "DACH2 WILD-TYPE" "DACH2 WILD-TYPE" "DACH2 WILD-TYPE" 
     TCGA-73-4676      TCGA-75-5122 
"DACH2 WILD-TYPE" "DACH2 WILD-TYPE" 
D254V5, multiclass
D254V6, multiclass
    clus
vv   DACH2 MUTATED DACH2 WILD-TYPE
  T1             0              41
  T2             8             100
  T3             1              13
  T4             0               8
D254V7, multiclass
       clus
vv      DACH2 MUTATED DACH2 WILD-TYPE
  N0                5              90
  N1                1              36
  N2+N3             3              32
D254V8, multiclass
    clus
vv   DACH2 MUTATED DACH2 WILD-TYPE
  M0             9             128
  M1             0               9
  MX             0              22
D254V9, multiclass
     clus
vv    DACH2 MUTATED DACH2 WILD-TYPE
  I               5              83
  II              1              32
  III             3              36
  IV              0               9
D254V10, binary
[1] "tbl2"
                 cls
clus              [,1] [,2]
  DACH2 MUTATED      0    9
  DACH2 WILD-TYPE   16  147
     clus
vv    DACH2 MUTATED DACH2 WILD-TYPE
  NO              0              16
  YES             9             147
D254V11, continuous
D254V12, continuous
D254V13, multiclass
                                             clus
vv                                            DACH2 MUTATED DACH2 WILD-TYPE
  CURRENT REFORMED SMOKER FOR < OR = 15 YEARS             4              58
  CURRENT REFORMED SMOKER FOR > 15 YEARS                  2              44
  CURRENT SMOKER                                          2              26
  LIFELONG NON-SMOKER                                     1              23
D254V14, continuous

Clustering(255) Variable = ESRRB MUTATION ANALYSIS
D255V1, survival
                 sevent
clus2              0  1
  ESRRB MUTATED    3  1
  ESRRB WILD-TYPE 96 49
  ESRRB MUTATED ESRRB WILD-TYPE 
              4             145 
  ESRRB MUTATED ESRRB WILD-TYPE 
              1              49 
$`ESRRB MUTATED`
TCGA-05-4427 TCGA-44-3918 TCGA-67-3771 TCGA-73-4659 
       26.01         6.44         1.97        23.38 

$`ESRRB WILD-TYPE`
TCGA-05-4249 TCGA-05-4250 TCGA-05-4382 TCGA-05-4384 TCGA-05-4390 TCGA-05-4396 
       38.07         3.98        19.92        14.01        37.02         9.96 
TCGA-05-4397 TCGA-05-4398 TCGA-05-4402 TCGA-05-4405 TCGA-05-4415 TCGA-05-4417 
       24.03        47.05         8.02        20.05         2.96        14.93 
TCGA-05-4418 TCGA-05-4420 TCGA-05-4424 TCGA-05-4426 TCGA-05-4430 TCGA-05-4432 
        8.98        29.95        30.02        26.01        25.02        25.02 
TCGA-05-4433 TCGA-05-4434 TCGA-05-5420 TCGA-05-5423 TCGA-05-5425 TCGA-05-5429 
       24.00        15.02         1.02         4.96         2.96         0.99 
TCGA-05-5715 TCGA-35-3615 TCGA-35-4122 TCGA-35-4123 TCGA-35-5375 TCGA-38-4625 
        2.04         0.46         7.36         5.95         8.68        47.61 
TCGA-38-4626 TCGA-38-4627 TCGA-38-4628 TCGA-38-4629 TCGA-38-4630 TCGA-38-4631 
       85.32        37.71        49.02        28.37        35.28        11.64 
TCGA-38-4632 TCGA-38-6178 TCGA-44-2655 TCGA-44-2656 TCGA-44-2657 TCGA-44-2659 
       44.61         5.19        18.87        19.10        13.15        17.39 
TCGA-44-2661 TCGA-44-2662 TCGA-44-2665 TCGA-44-2666 TCGA-44-2668 TCGA-44-3396 
        3.39        15.78        13.15         3.19         8.09        10.22 
TCGA-44-3398 TCGA-44-3919 TCGA-44-4112 TCGA-44-5643 TCGA-44-5645 TCGA-44-6144 
        8.32         6.21         4.60         3.48         6.84         0.30 
TCGA-44-6145 TCGA-44-6146 TCGA-44-6147 TCGA-44-6148 TCGA-44-6774 TCGA-44-6775 
        3.35         9.93         7.76         3.12         5.42         2.70 
TCGA-44-6776 TCGA-44-6777 TCGA-44-6778 TCGA-44-6779 TCGA-49-4486 TCGA-49-4487 
       63.72        32.45        36.49        16.41        76.21        28.11 
TCGA-49-4488 TCGA-49-4490 TCGA-49-4494 TCGA-49-4501 TCGA-49-4505 TCGA-49-4506 
       28.57        12.66        35.54        46.72        14.07        32.84 
TCGA-49-4507 TCGA-49-4510 TCGA-49-4512 TCGA-49-4514 TCGA-49-6742 TCGA-49-6743 
        8.81        29.46        29.75        43.20        15.02        12.13 
TCGA-49-6744 TCGA-49-6745 TCGA-50-5044 TCGA-50-5045 TCGA-50-5049 TCGA-50-5051 
       12.99         4.93        20.48        71.47        48.82        14.96 
TCGA-50-5055 TCGA-50-5066 TCGA-50-5068 TCGA-50-5072 TCGA-50-5930 TCGA-50-5931 
       25.81         9.76        49.28         8.05         9.27         8.78 
TCGA-50-5932 TCGA-50-5933 TCGA-50-5935 TCGA-50-5936 TCGA-50-5939 TCGA-50-5941 
       35.87        77.88        21.47         8.45        15.12         9.37 
TCGA-50-5942 TCGA-50-5944 TCGA-50-5946 TCGA-50-6590 TCGA-50-6591 TCGA-50-6592 
        4.44        12.26        11.47        42.31         3.88        25.51 
TCGA-50-6593 TCGA-50-6594 TCGA-50-6595 TCGA-50-6597 TCGA-55-1592 TCGA-55-1594 
       11.05        12.16         6.21        33.37        23.05        38.73 
TCGA-55-1595 TCGA-55-1596 TCGA-55-5899 TCGA-55-6543 TCGA-55-6642 TCGA-55-6712 
       48.62        45.17         2.86         0.07        32.61         0.79 
TCGA-64-1676 TCGA-64-1677 TCGA-64-1678 TCGA-64-1680 TCGA-64-5774 TCGA-64-5775 
       56.81        20.65        39.09        37.02        83.84         0.10 
TCGA-64-5778 TCGA-64-5779 TCGA-64-5781 TCGA-64-5815 TCGA-67-3770 TCGA-67-3772 
       30.44        16.67        39.52         7.33         0.99         0.59 
TCGA-67-3773 TCGA-67-3774 TCGA-67-6215 TCGA-67-6216 TCGA-67-6217 TCGA-71-6725 
        2.04         0.59         0.89         0.69        13.87         2.01 
TCGA-73-4658 TCGA-73-4662 TCGA-73-4666 TCGA-73-4668 TCGA-73-4670 TCGA-73-4675 
       52.57        29.95        20.28        15.35         0.46         1.32 
TCGA-73-4676 TCGA-73-4677 TCGA-91-6828 TCGA-91-6829 TCGA-91-6831 TCGA-91-6835 
        4.01         1.25         1.22        41.33         1.28         1.15 
TCGA-91-6836 
        0.36 

  ESRRB MUTATED ESRRB WILD-TYPE 
           1.97            0.07 
  ESRRB MUTATED ESRRB WILD-TYPE 
          26.01           85.32 
  ESRRB MUTATED ESRRB WILD-TYPE 
          14.91           13.87 
[1] "2.0 - 26.0 (14.9)" "0.1 - 85.3 (13.9)"
     TCGA-05-4249      TCGA-05-4250      TCGA-05-4382      TCGA-05-4384 
"ESRRB WILD-TYPE" "ESRRB WILD-TYPE" "ESRRB WILD-TYPE" "ESRRB WILD-TYPE" 
     TCGA-05-4390      TCGA-05-4396      TCGA-05-4397      TCGA-05-4398 
"ESRRB WILD-TYPE" "ESRRB WILD-TYPE" "ESRRB WILD-TYPE" "ESRRB WILD-TYPE" 
     TCGA-05-4402      TCGA-05-4405      TCGA-05-4415      TCGA-05-4417 
"ESRRB WILD-TYPE" "ESRRB WILD-TYPE" "ESRRB WILD-TYPE" "ESRRB WILD-TYPE" 
     TCGA-05-4418      TCGA-05-4420      TCGA-05-4424      TCGA-05-4426 
"ESRRB WILD-TYPE" "ESRRB WILD-TYPE" "ESRRB WILD-TYPE" "ESRRB WILD-TYPE" 
     TCGA-05-4427      TCGA-05-4430      TCGA-05-4432      TCGA-05-4433 
  "ESRRB MUTATED" "ESRRB WILD-TYPE" "ESRRB WILD-TYPE" "ESRRB WILD-TYPE" 
     TCGA-05-4434      TCGA-05-5420      TCGA-05-5423      TCGA-05-5425 
"ESRRB WILD-TYPE" "ESRRB WILD-TYPE" "ESRRB WILD-TYPE" "ESRRB WILD-TYPE" 
     TCGA-05-5429      TCGA-05-5715      TCGA-35-3615      TCGA-35-4122 
"ESRRB WILD-TYPE" "ESRRB WILD-TYPE" "ESRRB WILD-TYPE" "ESRRB WILD-TYPE" 
     TCGA-35-4123      TCGA-35-5375      TCGA-38-4625      TCGA-38-4626 
"ESRRB WILD-TYPE" "ESRRB WILD-TYPE" "ESRRB WILD-TYPE" "ESRRB WILD-TYPE" 
     TCGA-38-4627      TCGA-38-4628      TCGA-38-4629      TCGA-38-4630 
"ESRRB WILD-TYPE" "ESRRB WILD-TYPE" "ESRRB WILD-TYPE" "ESRRB WILD-TYPE" 
     TCGA-38-4631      TCGA-38-4632      TCGA-38-6178      TCGA-44-2655 
"ESRRB WILD-TYPE" "ESRRB WILD-TYPE" "ESRRB WILD-TYPE" "ESRRB WILD-TYPE" 
     TCGA-44-2656      TCGA-44-2657      TCGA-44-2659      TCGA-44-2661 
"ESRRB WILD-TYPE" "ESRRB WILD-TYPE" "ESRRB WILD-TYPE" "ESRRB WILD-TYPE" 
     TCGA-44-2662      TCGA-44-2665      TCGA-44-2666      TCGA-44-2668 
"ESRRB WILD-TYPE" "ESRRB WILD-TYPE" "ESRRB WILD-TYPE" "ESRRB WILD-TYPE" 
     TCGA-44-3396      TCGA-44-3398      TCGA-44-3918      TCGA-44-3919 
"ESRRB WILD-TYPE" "ESRRB WILD-TYPE"   "ESRRB MUTATED" "ESRRB WILD-TYPE" 
     TCGA-44-4112      TCGA-44-5643      TCGA-44-5645      TCGA-44-6144 
"ESRRB WILD-TYPE" "ESRRB WILD-TYPE" "ESRRB WILD-TYPE" "ESRRB WILD-TYPE" 
     TCGA-44-6145      TCGA-44-6146      TCGA-44-6147      TCGA-44-6148 
"ESRRB WILD-TYPE" "ESRRB WILD-TYPE" "ESRRB WILD-TYPE" "ESRRB WILD-TYPE" 
     TCGA-44-6774      TCGA-44-6775      TCGA-44-6776      TCGA-44-6777 
"ESRRB WILD-TYPE" "ESRRB WILD-TYPE" "ESRRB WILD-TYPE" "ESRRB WILD-TYPE" 
     TCGA-44-6778      TCGA-44-6779      TCGA-49-4486      TCGA-49-4487 
"ESRRB WILD-TYPE" "ESRRB WILD-TYPE" "ESRRB WILD-TYPE" "ESRRB WILD-TYPE" 
     TCGA-49-4488      TCGA-49-4490      TCGA-49-4494      TCGA-49-4501 
"ESRRB WILD-TYPE" "ESRRB WILD-TYPE" "ESRRB WILD-TYPE" "ESRRB WILD-TYPE" 
     TCGA-49-4505      TCGA-49-4506      TCGA-49-4507      TCGA-49-4510 
"ESRRB WILD-TYPE" "ESRRB WILD-TYPE" "ESRRB WILD-TYPE" "ESRRB WILD-TYPE" 
     TCGA-49-4512      TCGA-49-4514      TCGA-49-6742      TCGA-49-6743 
"ESRRB WILD-TYPE" "ESRRB WILD-TYPE" "ESRRB WILD-TYPE" "ESRRB WILD-TYPE" 
     TCGA-49-6744      TCGA-49-6745      TCGA-50-5044      TCGA-50-5045 
"ESRRB WILD-TYPE" "ESRRB WILD-TYPE" "ESRRB WILD-TYPE" "ESRRB WILD-TYPE" 
     TCGA-50-5049      TCGA-50-5051      TCGA-50-5055      TCGA-50-5066 
"ESRRB WILD-TYPE" "ESRRB WILD-TYPE" "ESRRB WILD-TYPE" "ESRRB WILD-TYPE" 
     TCGA-50-5068      TCGA-50-5072      TCGA-50-5930      TCGA-50-5931 
"ESRRB WILD-TYPE" "ESRRB WILD-TYPE" "ESRRB WILD-TYPE" "ESRRB WILD-TYPE" 
     TCGA-50-5932      TCGA-50-5933      TCGA-50-5935      TCGA-50-5936 
"ESRRB WILD-TYPE" "ESRRB WILD-TYPE" "ESRRB WILD-TYPE" "ESRRB WILD-TYPE" 
     TCGA-50-5939      TCGA-50-5941      TCGA-50-5942      TCGA-50-5944 
"ESRRB WILD-TYPE" "ESRRB WILD-TYPE" "ESRRB WILD-TYPE" "ESRRB WILD-TYPE" 
     TCGA-50-5946      TCGA-50-6590      TCGA-50-6591      TCGA-50-6592 
"ESRRB WILD-TYPE" "ESRRB WILD-TYPE" "ESRRB WILD-TYPE" "ESRRB WILD-TYPE" 
     TCGA-50-6593      TCGA-50-6594      TCGA-50-6595      TCGA-50-6597 
"ESRRB WILD-TYPE" "ESRRB WILD-TYPE" "ESRRB WILD-TYPE" "ESRRB WILD-TYPE" 
     TCGA-55-1592      TCGA-55-1594      TCGA-55-1595      TCGA-55-1596 
"ESRRB WILD-TYPE" "ESRRB WILD-TYPE" "ESRRB WILD-TYPE" "ESRRB WILD-TYPE" 
     TCGA-55-5899      TCGA-55-6543      TCGA-55-6642      TCGA-55-6712 
"ESRRB WILD-TYPE" "ESRRB WILD-TYPE" "ESRRB WILD-TYPE" "ESRRB WILD-TYPE" 
     TCGA-64-1676      TCGA-64-1677      TCGA-64-1678      TCGA-64-1680 
"ESRRB WILD-TYPE" "ESRRB WILD-TYPE" "ESRRB WILD-TYPE" "ESRRB WILD-TYPE" 
     TCGA-64-5774      TCGA-64-5775      TCGA-64-5778      TCGA-64-5779 
"ESRRB WILD-TYPE" "ESRRB WILD-TYPE" "ESRRB WILD-TYPE" "ESRRB WILD-TYPE" 
     TCGA-64-5781      TCGA-64-5815      TCGA-67-3770      TCGA-67-3771 
"ESRRB WILD-TYPE" "ESRRB WILD-TYPE" "ESRRB WILD-TYPE"   "ESRRB MUTATED" 
     TCGA-67-3772      TCGA-67-3773      TCGA-67-3774      TCGA-67-6215 
"ESRRB WILD-TYPE" "ESRRB WILD-TYPE" "ESRRB WILD-TYPE" "ESRRB WILD-TYPE" 
     TCGA-67-6216      TCGA-67-6217      TCGA-71-6725      TCGA-73-4658 
"ESRRB WILD-TYPE" "ESRRB WILD-TYPE" "ESRRB WILD-TYPE" "ESRRB WILD-TYPE" 
     TCGA-73-4659      TCGA-73-4662      TCGA-73-4666      TCGA-73-4668 
  "ESRRB MUTATED" "ESRRB WILD-TYPE" "ESRRB WILD-TYPE" "ESRRB WILD-TYPE" 
     TCGA-73-4670      TCGA-73-4675      TCGA-73-4676      TCGA-73-4677 
"ESRRB WILD-TYPE" "ESRRB WILD-TYPE" "ESRRB WILD-TYPE" "ESRRB WILD-TYPE" 
     TCGA-91-6828      TCGA-91-6829      TCGA-91-6831      TCGA-91-6835 
"ESRRB WILD-TYPE" "ESRRB WILD-TYPE" "ESRRB WILD-TYPE" "ESRRB WILD-TYPE" 
     TCGA-91-6836 
"ESRRB WILD-TYPE" 
     TCGA-05-4249      TCGA-05-4250      TCGA-05-4382      TCGA-05-4384 
"ESRRB WILD-TYPE" "ESRRB WILD-TYPE" "ESRRB WILD-TYPE" "ESRRB WILD-TYPE" 
     TCGA-05-4390      TCGA-05-4396      TCGA-05-4397      TCGA-05-4398 
"ESRRB WILD-TYPE" "ESRRB WILD-TYPE" "ESRRB WILD-TYPE" "ESRRB WILD-TYPE" 
     TCGA-05-4402      TCGA-05-4405      TCGA-05-4415      TCGA-05-4417 
"ESRRB WILD-TYPE" "ESRRB WILD-TYPE" "ESRRB WILD-TYPE" "ESRRB WILD-TYPE" 
     TCGA-05-4418      TCGA-05-4420      TCGA-05-4424      TCGA-05-4426 
"ESRRB WILD-TYPE" "ESRRB WILD-TYPE" "ESRRB WILD-TYPE" "ESRRB WILD-TYPE" 
     TCGA-05-4427      TCGA-05-4430      TCGA-05-4432      TCGA-05-4433 
  "ESRRB MUTATED" "ESRRB WILD-TYPE" "ESRRB WILD-TYPE" "ESRRB WILD-TYPE" 
     TCGA-05-4434      TCGA-05-5420      TCGA-05-5423      TCGA-05-5425 
"ESRRB WILD-TYPE" "ESRRB WILD-TYPE" "ESRRB WILD-TYPE" "ESRRB WILD-TYPE" 
     TCGA-05-5429      TCGA-05-5715      TCGA-35-3615      TCGA-35-4122 
"ESRRB WILD-TYPE" "ESRRB WILD-TYPE" "ESRRB WILD-TYPE" "ESRRB WILD-TYPE" 
     TCGA-35-4123      TCGA-35-5375      TCGA-38-4625      TCGA-38-4626 
"ESRRB WILD-TYPE" "ESRRB WILD-TYPE" "ESRRB WILD-TYPE" "ESRRB WILD-TYPE" 
     TCGA-38-4627      TCGA-38-4628      TCGA-38-4629      TCGA-38-4630 
"ESRRB WILD-TYPE" "ESRRB WILD-TYPE" "ESRRB WILD-TYPE" "ESRRB WILD-TYPE" 
     TCGA-38-4631      TCGA-38-4632      TCGA-38-6178      TCGA-44-2655 
"ESRRB WILD-TYPE" "ESRRB WILD-TYPE" "ESRRB WILD-TYPE" "ESRRB WILD-TYPE" 
     TCGA-44-2656      TCGA-44-2657      TCGA-44-2659      TCGA-44-2661 
"ESRRB WILD-TYPE" "ESRRB WILD-TYPE" "ESRRB WILD-TYPE" "ESRRB WILD-TYPE" 
     TCGA-44-2662      TCGA-44-2665      TCGA-44-2666      TCGA-44-2668 
"ESRRB WILD-TYPE" "ESRRB WILD-TYPE" "ESRRB WILD-TYPE" "ESRRB WILD-TYPE" 
     TCGA-44-3396      TCGA-44-3398      TCGA-44-3918      TCGA-44-3919 
"ESRRB WILD-TYPE" "ESRRB WILD-TYPE"   "ESRRB MUTATED" "ESRRB WILD-TYPE" 
     TCGA-44-4112      TCGA-44-5643      TCGA-44-5645      TCGA-44-6144 
"ESRRB WILD-TYPE" "ESRRB WILD-TYPE" "ESRRB WILD-TYPE" "ESRRB WILD-TYPE" 
     TCGA-44-6145      TCGA-44-6146      TCGA-44-6147      TCGA-44-6148 
"ESRRB WILD-TYPE" "ESRRB WILD-TYPE" "ESRRB WILD-TYPE" "ESRRB WILD-TYPE" 
     TCGA-44-6774      TCGA-44-6775      TCGA-44-6776      TCGA-44-6777 
"ESRRB WILD-TYPE" "ESRRB WILD-TYPE" "ESRRB WILD-TYPE" "ESRRB WILD-TYPE" 
     TCGA-44-6778      TCGA-44-6779      TCGA-49-4486      TCGA-49-4487 
"ESRRB WILD-TYPE" "ESRRB WILD-TYPE" "ESRRB WILD-TYPE" "ESRRB WILD-TYPE" 
     TCGA-49-4488      TCGA-49-4490      TCGA-49-4494      TCGA-49-4501 
"ESRRB WILD-TYPE" "ESRRB WILD-TYPE" "ESRRB WILD-TYPE" "ESRRB WILD-TYPE" 
     TCGA-49-4505      TCGA-49-4506      TCGA-49-4507      TCGA-49-4510 
"ESRRB WILD-TYPE" "ESRRB WILD-TYPE" "ESRRB WILD-TYPE" "ESRRB WILD-TYPE" 
     TCGA-49-4512      TCGA-49-4514      TCGA-49-6742      TCGA-49-6743 
"ESRRB WILD-TYPE" "ESRRB WILD-TYPE" "ESRRB WILD-TYPE" "ESRRB WILD-TYPE" 
     TCGA-49-6744      TCGA-49-6745      TCGA-50-5044      TCGA-50-5045 
"ESRRB WILD-TYPE" "ESRRB WILD-TYPE" "ESRRB WILD-TYPE" "ESRRB WILD-TYPE" 
     TCGA-50-5049      TCGA-50-5051      TCGA-50-5055      TCGA-50-5066 
"ESRRB WILD-TYPE" "ESRRB WILD-TYPE" "ESRRB WILD-TYPE" "ESRRB WILD-TYPE" 
     TCGA-50-5068      TCGA-50-5072      TCGA-50-5930      TCGA-50-5931 
"ESRRB WILD-TYPE" "ESRRB WILD-TYPE" "ESRRB WILD-TYPE" "ESRRB WILD-TYPE" 
     TCGA-50-5932      TCGA-50-5933      TCGA-50-5935      TCGA-50-5936 
"ESRRB WILD-TYPE" "ESRRB WILD-TYPE" "ESRRB WILD-TYPE" "ESRRB WILD-TYPE" 
     TCGA-50-5939      TCGA-50-5941      TCGA-50-5942      TCGA-50-5944 
"ESRRB WILD-TYPE" "ESRRB WILD-TYPE" "ESRRB WILD-TYPE" "ESRRB WILD-TYPE" 
     TCGA-50-5946      TCGA-50-6590      TCGA-50-6591      TCGA-50-6592 
"ESRRB WILD-TYPE" "ESRRB WILD-TYPE" "ESRRB WILD-TYPE" "ESRRB WILD-TYPE" 
     TCGA-50-6593      TCGA-50-6594      TCGA-50-6595      TCGA-50-6597 
"ESRRB WILD-TYPE" "ESRRB WILD-TYPE" "ESRRB WILD-TYPE" "ESRRB WILD-TYPE" 
     TCGA-55-1592      TCGA-55-1594      TCGA-55-1595      TCGA-55-1596 
"ESRRB WILD-TYPE" "ESRRB WILD-TYPE" "ESRRB WILD-TYPE" "ESRRB WILD-TYPE" 
     TCGA-55-5899      TCGA-55-6543      TCGA-55-6642      TCGA-55-6712 
"ESRRB WILD-TYPE" "ESRRB WILD-TYPE" "ESRRB WILD-TYPE" "ESRRB WILD-TYPE" 
     TCGA-64-1676      TCGA-64-1677      TCGA-64-1678      TCGA-64-1680 
"ESRRB WILD-TYPE" "ESRRB WILD-TYPE" "ESRRB WILD-TYPE" "ESRRB WILD-TYPE" 
     TCGA-64-5774      TCGA-64-5775      TCGA-64-5778      TCGA-64-5779 
"ESRRB WILD-TYPE" "ESRRB WILD-TYPE" "ESRRB WILD-TYPE" "ESRRB WILD-TYPE" 
     TCGA-64-5781      TCGA-64-5815      TCGA-67-3770      TCGA-67-3771 
"ESRRB WILD-TYPE" "ESRRB WILD-TYPE" "ESRRB WILD-TYPE"   "ESRRB MUTATED" 
     TCGA-67-3772      TCGA-67-3773      TCGA-67-3774      TCGA-67-6215 
"ESRRB WILD-TYPE" "ESRRB WILD-TYPE" "ESRRB WILD-TYPE" "ESRRB WILD-TYPE" 
     TCGA-67-6216      TCGA-67-6217      TCGA-71-6725      TCGA-73-4658 
"ESRRB WILD-TYPE" "ESRRB WILD-TYPE" "ESRRB WILD-TYPE" "ESRRB WILD-TYPE" 
     TCGA-73-4659      TCGA-73-4662      TCGA-73-4666      TCGA-73-4668 
  "ESRRB MUTATED" "ESRRB WILD-TYPE" "ESRRB WILD-TYPE" "ESRRB WILD-TYPE" 
     TCGA-73-4670      TCGA-73-4675      TCGA-73-4676      TCGA-73-4677 
"ESRRB WILD-TYPE" "ESRRB WILD-TYPE" "ESRRB WILD-TYPE" "ESRRB WILD-TYPE" 
     TCGA-91-6828      TCGA-91-6829      TCGA-91-6831      TCGA-91-6835 
"ESRRB WILD-TYPE" "ESRRB WILD-TYPE" "ESRRB WILD-TYPE" "ESRRB WILD-TYPE" 
     TCGA-91-6836 
"ESRRB WILD-TYPE" 
     TCGA-05-4249      TCGA-05-4250      TCGA-05-4382      TCGA-05-4384 
"ESRRB WILD-TYPE" "ESRRB WILD-TYPE" "ESRRB WILD-TYPE" "ESRRB WILD-TYPE" 
     TCGA-05-4390      TCGA-05-4396      TCGA-05-4397      TCGA-05-4398 
"ESRRB WILD-TYPE" "ESRRB WILD-TYPE" "ESRRB WILD-TYPE" "ESRRB WILD-TYPE" 
     TCGA-05-4402      TCGA-05-4405      TCGA-05-4415      TCGA-05-4417 
"ESRRB WILD-TYPE" "ESRRB WILD-TYPE" "ESRRB WILD-TYPE" "ESRRB WILD-TYPE" 
     TCGA-05-4418      TCGA-05-4420      TCGA-05-4424      TCGA-05-4426 
"ESRRB WILD-TYPE" "ESRRB WILD-TYPE" "ESRRB WILD-TYPE" "ESRRB WILD-TYPE" 
     TCGA-05-4427      TCGA-05-4430      TCGA-05-4432      TCGA-05-4433 
  "ESRRB MUTATED" "ESRRB WILD-TYPE" "ESRRB WILD-TYPE" "ESRRB WILD-TYPE" 
     TCGA-05-4434      TCGA-05-5420      TCGA-05-5423      TCGA-05-5425 
"ESRRB WILD-TYPE" "ESRRB WILD-TYPE" "ESRRB WILD-TYPE" "ESRRB WILD-TYPE" 
     TCGA-05-5429      TCGA-05-5715      TCGA-35-3615      TCGA-35-4122 
"ESRRB WILD-TYPE" "ESRRB WILD-TYPE" "ESRRB WILD-TYPE" "ESRRB WILD-TYPE" 
     TCGA-35-4123      TCGA-35-5375      TCGA-38-4625      TCGA-38-4626 
"ESRRB WILD-TYPE" "ESRRB WILD-TYPE" "ESRRB WILD-TYPE" "ESRRB WILD-TYPE" 
     TCGA-38-4627      TCGA-38-4628      TCGA-38-4629      TCGA-38-4630 
"ESRRB WILD-TYPE" "ESRRB WILD-TYPE" "ESRRB WILD-TYPE" "ESRRB WILD-TYPE" 
     TCGA-38-4631      TCGA-38-4632      TCGA-38-6178      TCGA-44-2655 
"ESRRB WILD-TYPE" "ESRRB WILD-TYPE" "ESRRB WILD-TYPE" "ESRRB WILD-TYPE" 
     TCGA-44-2656      TCGA-44-2657      TCGA-44-2659      TCGA-44-2661 
"ESRRB WILD-TYPE" "ESRRB WILD-TYPE" "ESRRB WILD-TYPE" "ESRRB WILD-TYPE" 
     TCGA-44-2662      TCGA-44-2665      TCGA-44-2666      TCGA-44-2668 
"ESRRB WILD-TYPE" "ESRRB WILD-TYPE" "ESRRB WILD-TYPE" "ESRRB WILD-TYPE" 
     TCGA-44-3396      TCGA-44-3398      TCGA-44-3918      TCGA-44-3919 
"ESRRB WILD-TYPE" "ESRRB WILD-TYPE"   "ESRRB MUTATED" "ESRRB WILD-TYPE" 
     TCGA-44-4112      TCGA-44-5643      TCGA-44-5645      TCGA-44-6144 
"ESRRB WILD-TYPE" "ESRRB WILD-TYPE" "ESRRB WILD-TYPE" "ESRRB WILD-TYPE" 
     TCGA-44-6145      TCGA-44-6146      TCGA-44-6147      TCGA-44-6148 
"ESRRB WILD-TYPE" "ESRRB WILD-TYPE" "ESRRB WILD-TYPE" "ESRRB WILD-TYPE" 
     TCGA-44-6774      TCGA-44-6775      TCGA-44-6776      TCGA-44-6777 
"ESRRB WILD-TYPE" "ESRRB WILD-TYPE" "ESRRB WILD-TYPE" "ESRRB WILD-TYPE" 
     TCGA-44-6778      TCGA-44-6779      TCGA-49-4486      TCGA-49-4487 
"ESRRB WILD-TYPE" "ESRRB WILD-TYPE" "ESRRB WILD-TYPE" "ESRRB WILD-TYPE" 
     TCGA-49-4488      TCGA-49-4490      TCGA-49-4494      TCGA-49-4501 
"ESRRB WILD-TYPE" "ESRRB WILD-TYPE" "ESRRB WILD-TYPE" "ESRRB WILD-TYPE" 
     TCGA-49-4505      TCGA-49-4506      TCGA-49-4507      TCGA-49-4510 
"ESRRB WILD-TYPE" "ESRRB WILD-TYPE" "ESRRB WILD-TYPE" "ESRRB WILD-TYPE" 
     TCGA-49-4512      TCGA-49-4514      TCGA-49-6742      TCGA-49-6743 
"ESRRB WILD-TYPE" "ESRRB WILD-TYPE" "ESRRB WILD-TYPE" "ESRRB WILD-TYPE" 
     TCGA-49-6744      TCGA-49-6745      TCGA-50-5044      TCGA-50-5045 
"ESRRB WILD-TYPE" "ESRRB WILD-TYPE" "ESRRB WILD-TYPE" "ESRRB WILD-TYPE" 
     TCGA-50-5049      TCGA-50-5051      TCGA-50-5055      TCGA-50-5066 
"ESRRB WILD-TYPE" "ESRRB WILD-TYPE" "ESRRB WILD-TYPE" "ESRRB WILD-TYPE" 
     TCGA-50-5068      TCGA-50-5072      TCGA-50-5930      TCGA-50-5931 
"ESRRB WILD-TYPE" "ESRRB WILD-TYPE" "ESRRB WILD-TYPE" "ESRRB WILD-TYPE" 
     TCGA-50-5932      TCGA-50-5933      TCGA-50-5935      TCGA-50-5936 
"ESRRB WILD-TYPE" "ESRRB WILD-TYPE" "ESRRB WILD-TYPE" "ESRRB WILD-TYPE" 
     TCGA-50-5939      TCGA-50-5941      TCGA-50-5942      TCGA-50-5944 
"ESRRB WILD-TYPE" "ESRRB WILD-TYPE" "ESRRB WILD-TYPE" "ESRRB WILD-TYPE" 
     TCGA-50-5946      TCGA-50-6590      TCGA-50-6591      TCGA-50-6592 
"ESRRB WILD-TYPE" "ESRRB WILD-TYPE" "ESRRB WILD-TYPE" "ESRRB WILD-TYPE" 
     TCGA-50-6593      TCGA-50-6594      TCGA-50-6595      TCGA-50-6597 
"ESRRB WILD-TYPE" "ESRRB WILD-TYPE" "ESRRB WILD-TYPE" "ESRRB WILD-TYPE" 
     TCGA-55-1592      TCGA-55-1594      TCGA-55-1595      TCGA-55-1596 
"ESRRB WILD-TYPE" "ESRRB WILD-TYPE" "ESRRB WILD-TYPE" "ESRRB WILD-TYPE" 
     TCGA-55-5899      TCGA-55-6543      TCGA-55-6642      TCGA-55-6712 
"ESRRB WILD-TYPE" "ESRRB WILD-TYPE" "ESRRB WILD-TYPE" "ESRRB WILD-TYPE" 
     TCGA-64-1676      TCGA-64-1677      TCGA-64-1678      TCGA-64-1680 
"ESRRB WILD-TYPE" "ESRRB WILD-TYPE" "ESRRB WILD-TYPE" "ESRRB WILD-TYPE" 
     TCGA-64-5774      TCGA-64-5775      TCGA-64-5778      TCGA-64-5779 
"ESRRB WILD-TYPE" "ESRRB WILD-TYPE" "ESRRB WILD-TYPE" "ESRRB WILD-TYPE" 
     TCGA-64-5781      TCGA-64-5815      TCGA-67-3770      TCGA-67-3771 
"ESRRB WILD-TYPE" "ESRRB WILD-TYPE" "ESRRB WILD-TYPE"   "ESRRB MUTATED" 
     TCGA-67-3772      TCGA-67-3773      TCGA-67-3774      TCGA-67-6215 
"ESRRB WILD-TYPE" "ESRRB WILD-TYPE" "ESRRB WILD-TYPE" "ESRRB WILD-TYPE" 
     TCGA-67-6216      TCGA-67-6217      TCGA-71-6725      TCGA-73-4658 
"ESRRB WILD-TYPE" "ESRRB WILD-TYPE" "ESRRB WILD-TYPE" "ESRRB WILD-TYPE" 
     TCGA-73-4659      TCGA-73-4662      TCGA-73-4666      TCGA-73-4668 
  "ESRRB MUTATED" "ESRRB WILD-TYPE" "ESRRB WILD-TYPE" "ESRRB WILD-TYPE" 
     TCGA-73-4670      TCGA-73-4675      TCGA-73-4676      TCGA-73-4677 
"ESRRB WILD-TYPE" "ESRRB WILD-TYPE" "ESRRB WILD-TYPE" "ESRRB WILD-TYPE" 
     TCGA-91-6828      TCGA-91-6829      TCGA-91-6831      TCGA-91-6835 
"ESRRB WILD-TYPE" "ESRRB WILD-TYPE" "ESRRB WILD-TYPE" "ESRRB WILD-TYPE" 
     TCGA-91-6836 
"ESRRB WILD-TYPE" 
[1] "hr=" "1.3"
D255V2, continuous
D255V3, binary
[1] "tbl2"
                 cls
clus              [,1] [,2]
  ESRRB MUTATED      3    1
  ESRRB WILD-TYPE   90   78
        clus
vv       ESRRB MUTATED ESRRB WILD-TYPE
  FEMALE             3              90
  MALE               1              78
D255V4, continuous
[1] "Remove cluster labels:" "ESRRB MUTATED"         
clus
  ESRRB MUTATED ESRRB WILD-TYPE 
              1              11 
     TCGA-35-4122      TCGA-35-4123      TCGA-35-5375      TCGA-64-1677 
"ESRRB WILD-TYPE" "ESRRB WILD-TYPE" "ESRRB WILD-TYPE" "ESRRB WILD-TYPE" 
     TCGA-64-5778      TCGA-71-6725      TCGA-73-4662      TCGA-73-4666 
"ESRRB WILD-TYPE" "ESRRB WILD-TYPE" "ESRRB WILD-TYPE" "ESRRB WILD-TYPE" 
     TCGA-73-4668      TCGA-73-4676      TCGA-75-5122 
"ESRRB WILD-TYPE" "ESRRB WILD-TYPE" "ESRRB WILD-TYPE" 
D255V5, multiclass
D255V6, multiclass
    clus
vv   ESRRB MUTATED ESRRB WILD-TYPE
  T1             2              39
  T2             2             106
  T3             0              14
  T4             0               8
D255V7, multiclass
       clus
vv      ESRRB MUTATED ESRRB WILD-TYPE
  N0                2              93
  N1                1              36
  N2+N3             1              34
D255V8, multiclass
    clus
vv   ESRRB MUTATED ESRRB WILD-TYPE
  M0             4             133
  M1             0               9
  MX             0              22
D255V9, multiclass
     clus
vv    ESRRB MUTATED ESRRB WILD-TYPE
  I               2              86
  II              1              32
  III             1              38
  IV              0               9
D255V10, binary
[1] "tbl2"
                 cls
clus              [,1] [,2]
  ESRRB MUTATED      0    4
  ESRRB WILD-TYPE   16  152
     clus
vv    ESRRB MUTATED ESRRB WILD-TYPE
  NO              0              16
  YES             4             152
D255V11, continuous
D255V12, continuous
D255V13, multiclass
                                             clus
vv                                            ESRRB MUTATED ESRRB WILD-TYPE
  CURRENT REFORMED SMOKER FOR < OR = 15 YEARS             2              60
  CURRENT REFORMED SMOKER FOR > 15 YEARS                  2              44
  CURRENT SMOKER                                          0              28
  LIFELONG NON-SMOKER                                     0              24
D255V14, continuous

Clustering(256) Variable = PNLIPRP2 MUTATION ANALYSIS
D256V1, survival
                    sevent
clus2                 0  1
  PNLIPRP2 MUTATED    4  0
  PNLIPRP2 WILD-TYPE 95 50
  PNLIPRP2 MUTATED PNLIPRP2 WILD-TYPE 
                 4                145 
  PNLIPRP2 MUTATED PNLIPRP2 WILD-TYPE 
                 0                 50 
$`PNLIPRP2 MUTATED`
TCGA-05-4432 TCGA-50-5941 TCGA-64-5774 TCGA-67-6217 
       25.02         9.37        83.84        13.87 

$`PNLIPRP2 WILD-TYPE`
TCGA-05-4249 TCGA-05-4250 TCGA-05-4382 TCGA-05-4384 TCGA-05-4390 TCGA-05-4396 
       38.07         3.98        19.92        14.01        37.02         9.96 
TCGA-05-4397 TCGA-05-4398 TCGA-05-4402 TCGA-05-4405 TCGA-05-4415 TCGA-05-4417 
       24.03        47.05         8.02        20.05         2.96        14.93 
TCGA-05-4418 TCGA-05-4420 TCGA-05-4424 TCGA-05-4426 TCGA-05-4427 TCGA-05-4430 
        8.98        29.95        30.02        26.01        26.01        25.02 
TCGA-05-4433 TCGA-05-4434 TCGA-05-5420 TCGA-05-5423 TCGA-05-5425 TCGA-05-5429 
       24.00        15.02         1.02         4.96         2.96         0.99 
TCGA-05-5715 TCGA-35-3615 TCGA-35-4122 TCGA-35-4123 TCGA-35-5375 TCGA-38-4625 
        2.04         0.46         7.36         5.95         8.68        47.61 
TCGA-38-4626 TCGA-38-4627 TCGA-38-4628 TCGA-38-4629 TCGA-38-4630 TCGA-38-4631 
       85.32        37.71        49.02        28.37        35.28        11.64 
TCGA-38-4632 TCGA-38-6178 TCGA-44-2655 TCGA-44-2656 TCGA-44-2657 TCGA-44-2659 
       44.61         5.19        18.87        19.10        13.15        17.39 
TCGA-44-2661 TCGA-44-2662 TCGA-44-2665 TCGA-44-2666 TCGA-44-2668 TCGA-44-3396 
        3.39        15.78        13.15         3.19         8.09        10.22 
TCGA-44-3398 TCGA-44-3918 TCGA-44-3919 TCGA-44-4112 TCGA-44-5643 TCGA-44-5645 
        8.32         6.44         6.21         4.60         3.48         6.84 
TCGA-44-6144 TCGA-44-6145 TCGA-44-6146 TCGA-44-6147 TCGA-44-6148 TCGA-44-6774 
        0.30         3.35         9.93         7.76         3.12         5.42 
TCGA-44-6775 TCGA-44-6776 TCGA-44-6777 TCGA-44-6778 TCGA-44-6779 TCGA-49-4486 
        2.70        63.72        32.45        36.49        16.41        76.21 
TCGA-49-4487 TCGA-49-4488 TCGA-49-4490 TCGA-49-4494 TCGA-49-4501 TCGA-49-4505 
       28.11        28.57        12.66        35.54        46.72        14.07 
TCGA-49-4506 TCGA-49-4507 TCGA-49-4510 TCGA-49-4512 TCGA-49-4514 TCGA-49-6742 
       32.84         8.81        29.46        29.75        43.20        15.02 
TCGA-49-6743 TCGA-49-6744 TCGA-49-6745 TCGA-50-5044 TCGA-50-5045 TCGA-50-5049 
       12.13        12.99         4.93        20.48        71.47        48.82 
TCGA-50-5051 TCGA-50-5055 TCGA-50-5066 TCGA-50-5068 TCGA-50-5072 TCGA-50-5930 
       14.96        25.81         9.76        49.28         8.05         9.27 
TCGA-50-5931 TCGA-50-5932 TCGA-50-5933 TCGA-50-5935 TCGA-50-5936 TCGA-50-5939 
        8.78        35.87        77.88        21.47         8.45        15.12 
TCGA-50-5942 TCGA-50-5944 TCGA-50-5946 TCGA-50-6590 TCGA-50-6591 TCGA-50-6592 
        4.44        12.26        11.47        42.31         3.88        25.51 
TCGA-50-6593 TCGA-50-6594 TCGA-50-6595 TCGA-50-6597 TCGA-55-1592 TCGA-55-1594 
       11.05        12.16         6.21        33.37        23.05        38.73 
TCGA-55-1595 TCGA-55-1596 TCGA-55-5899 TCGA-55-6543 TCGA-55-6642 TCGA-55-6712 
       48.62        45.17         2.86         0.07        32.61         0.79 
TCGA-64-1676 TCGA-64-1677 TCGA-64-1678 TCGA-64-1680 TCGA-64-5775 TCGA-64-5778 
       56.81        20.65        39.09        37.02         0.10        30.44 
TCGA-64-5779 TCGA-64-5781 TCGA-64-5815 TCGA-67-3770 TCGA-67-3771 TCGA-67-3772 
       16.67        39.52         7.33         0.99         1.97         0.59 
TCGA-67-3773 TCGA-67-3774 TCGA-67-6215 TCGA-67-6216 TCGA-71-6725 TCGA-73-4658 
        2.04         0.59         0.89         0.69         2.01        52.57 
TCGA-73-4659 TCGA-73-4662 TCGA-73-4666 TCGA-73-4668 TCGA-73-4670 TCGA-73-4675 
       23.38        29.95        20.28        15.35         0.46         1.32 
TCGA-73-4676 TCGA-73-4677 TCGA-91-6828 TCGA-91-6829 TCGA-91-6831 TCGA-91-6835 
        4.01         1.25         1.22        41.33         1.28         1.15 
TCGA-91-6836 
        0.36 

  PNLIPRP2 MUTATED PNLIPRP2 WILD-TYPE 
              9.37               0.07 
  PNLIPRP2 MUTATED PNLIPRP2 WILD-TYPE 
             83.84              85.32 
  PNLIPRP2 MUTATED PNLIPRP2 WILD-TYPE 
            19.445             13.150 
[1] "9.4 - 83.8 (19.4)" "0.1 - 85.3 (13.2)"
        TCGA-05-4249         TCGA-05-4250         TCGA-05-4382 
"PNLIPRP2 WILD-TYPE" "PNLIPRP2 WILD-TYPE" "PNLIPRP2 WILD-TYPE" 
        TCGA-05-4384         TCGA-05-4390         TCGA-05-4396 
"PNLIPRP2 WILD-TYPE" "PNLIPRP2 WILD-TYPE" "PNLIPRP2 WILD-TYPE" 
        TCGA-05-4397         TCGA-05-4398         TCGA-05-4402 
"PNLIPRP2 WILD-TYPE" "PNLIPRP2 WILD-TYPE" "PNLIPRP2 WILD-TYPE" 
        TCGA-05-4405         TCGA-05-4415         TCGA-05-4417 
"PNLIPRP2 WILD-TYPE" "PNLIPRP2 WILD-TYPE" "PNLIPRP2 WILD-TYPE" 
        TCGA-05-4418         TCGA-05-4420         TCGA-05-4424 
"PNLIPRP2 WILD-TYPE" "PNLIPRP2 WILD-TYPE" "PNLIPRP2 WILD-TYPE" 
        TCGA-05-4426         TCGA-05-4427         TCGA-05-4430 
"PNLIPRP2 WILD-TYPE" "PNLIPRP2 WILD-TYPE" "PNLIPRP2 WILD-TYPE" 
        TCGA-05-4432         TCGA-05-4433         TCGA-05-4434 
  "PNLIPRP2 MUTATED" "PNLIPRP2 WILD-TYPE" "PNLIPRP2 WILD-TYPE" 
        TCGA-05-5420         TCGA-05-5423         TCGA-05-5425 
"PNLIPRP2 WILD-TYPE" "PNLIPRP2 WILD-TYPE" "PNLIPRP2 WILD-TYPE" 
        TCGA-05-5429         TCGA-05-5715         TCGA-35-3615 
"PNLIPRP2 WILD-TYPE" "PNLIPRP2 WILD-TYPE" "PNLIPRP2 WILD-TYPE" 
        TCGA-35-4122         TCGA-35-4123         TCGA-35-5375 
"PNLIPRP2 WILD-TYPE" "PNLIPRP2 WILD-TYPE" "PNLIPRP2 WILD-TYPE" 
        TCGA-38-4625         TCGA-38-4626         TCGA-38-4627 
"PNLIPRP2 WILD-TYPE" "PNLIPRP2 WILD-TYPE" "PNLIPRP2 WILD-TYPE" 
        TCGA-38-4628         TCGA-38-4629         TCGA-38-4630 
"PNLIPRP2 WILD-TYPE" "PNLIPRP2 WILD-TYPE" "PNLIPRP2 WILD-TYPE" 
        TCGA-38-4631         TCGA-38-4632         TCGA-38-6178 
"PNLIPRP2 WILD-TYPE" "PNLIPRP2 WILD-TYPE" "PNLIPRP2 WILD-TYPE" 
        TCGA-44-2655         TCGA-44-2656         TCGA-44-2657 
"PNLIPRP2 WILD-TYPE" "PNLIPRP2 WILD-TYPE" "PNLIPRP2 WILD-TYPE" 
        TCGA-44-2659         TCGA-44-2661         TCGA-44-2662 
"PNLIPRP2 WILD-TYPE" "PNLIPRP2 WILD-TYPE" "PNLIPRP2 WILD-TYPE" 
        TCGA-44-2665         TCGA-44-2666         TCGA-44-2668 
"PNLIPRP2 WILD-TYPE" "PNLIPRP2 WILD-TYPE" "PNLIPRP2 WILD-TYPE" 
        TCGA-44-3396         TCGA-44-3398         TCGA-44-3918 
"PNLIPRP2 WILD-TYPE" "PNLIPRP2 WILD-TYPE" "PNLIPRP2 WILD-TYPE" 
        TCGA-44-3919         TCGA-44-4112         TCGA-44-5643 
"PNLIPRP2 WILD-TYPE" "PNLIPRP2 WILD-TYPE" "PNLIPRP2 WILD-TYPE" 
        TCGA-44-5645         TCGA-44-6144         TCGA-44-6145 
"PNLIPRP2 WILD-TYPE" "PNLIPRP2 WILD-TYPE" "PNLIPRP2 WILD-TYPE" 
        TCGA-44-6146         TCGA-44-6147         TCGA-44-6148 
"PNLIPRP2 WILD-TYPE" "PNLIPRP2 WILD-TYPE" "PNLIPRP2 WILD-TYPE" 
        TCGA-44-6774         TCGA-44-6775         TCGA-44-6776 
"PNLIPRP2 WILD-TYPE" "PNLIPRP2 WILD-TYPE" "PNLIPRP2 WILD-TYPE" 
        TCGA-44-6777         TCGA-44-6778         TCGA-44-6779 
"PNLIPRP2 WILD-TYPE" "PNLIPRP2 WILD-TYPE" "PNLIPRP2 WILD-TYPE" 
        TCGA-49-4486         TCGA-49-4487         TCGA-49-4488 
"PNLIPRP2 WILD-TYPE" "PNLIPRP2 WILD-TYPE" "PNLIPRP2 WILD-TYPE" 
        TCGA-49-4490         TCGA-49-4494         TCGA-49-4501 
"PNLIPRP2 WILD-TYPE" "PNLIPRP2 WILD-TYPE" "PNLIPRP2 WILD-TYPE" 
        TCGA-49-4505         TCGA-49-4506         TCGA-49-4507 
"PNLIPRP2 WILD-TYPE" "PNLIPRP2 WILD-TYPE" "PNLIPRP2 WILD-TYPE" 
        TCGA-49-4510         TCGA-49-4512         TCGA-49-4514 
"PNLIPRP2 WILD-TYPE" "PNLIPRP2 WILD-TYPE" "PNLIPRP2 WILD-TYPE" 
        TCGA-49-6742         TCGA-49-6743         TCGA-49-6744 
"PNLIPRP2 WILD-TYPE" "PNLIPRP2 WILD-TYPE" "PNLIPRP2 WILD-TYPE" 
        TCGA-49-6745         TCGA-50-5044         TCGA-50-5045 
"PNLIPRP2 WILD-TYPE" "PNLIPRP2 WILD-TYPE" "PNLIPRP2 WILD-TYPE" 
        TCGA-50-5049         TCGA-50-5051         TCGA-50-5055 
"PNLIPRP2 WILD-TYPE" "PNLIPRP2 WILD-TYPE" "PNLIPRP2 WILD-TYPE" 
        TCGA-50-5066         TCGA-50-5068         TCGA-50-5072 
"PNLIPRP2 WILD-TYPE" "PNLIPRP2 WILD-TYPE" "PNLIPRP2 WILD-TYPE" 
        TCGA-50-5930         TCGA-50-5931         TCGA-50-5932 
"PNLIPRP2 WILD-TYPE" "PNLIPRP2 WILD-TYPE" "PNLIPRP2 WILD-TYPE" 
        TCGA-50-5933         TCGA-50-5935         TCGA-50-5936 
"PNLIPRP2 WILD-TYPE" "PNLIPRP2 WILD-TYPE" "PNLIPRP2 WILD-TYPE" 
        TCGA-50-5939         TCGA-50-5941         TCGA-50-5942 
"PNLIPRP2 WILD-TYPE"   "PNLIPRP2 MUTATED" "PNLIPRP2 WILD-TYPE" 
        TCGA-50-5944         TCGA-50-5946         TCGA-50-6590 
"PNLIPRP2 WILD-TYPE" "PNLIPRP2 WILD-TYPE" "PNLIPRP2 WILD-TYPE" 
        TCGA-50-6591         TCGA-50-6592         TCGA-50-6593 
"PNLIPRP2 WILD-TYPE" "PNLIPRP2 WILD-TYPE" "PNLIPRP2 WILD-TYPE" 
        TCGA-50-6594         TCGA-50-6595         TCGA-50-6597 
"PNLIPRP2 WILD-TYPE" "PNLIPRP2 WILD-TYPE" "PNLIPRP2 WILD-TYPE" 
        TCGA-55-1592         TCGA-55-1594         TCGA-55-1595 
"PNLIPRP2 WILD-TYPE" "PNLIPRP2 WILD-TYPE" "PNLIPRP2 WILD-TYPE" 
        TCGA-55-1596         TCGA-55-5899         TCGA-55-6543 
"PNLIPRP2 WILD-TYPE" "PNLIPRP2 WILD-TYPE" "PNLIPRP2 WILD-TYPE" 
        TCGA-55-6642         TCGA-55-6712         TCGA-64-1676 
"PNLIPRP2 WILD-TYPE" "PNLIPRP2 WILD-TYPE" "PNLIPRP2 WILD-TYPE" 
        TCGA-64-1677         TCGA-64-1678         TCGA-64-1680 
"PNLIPRP2 WILD-TYPE" "PNLIPRP2 WILD-TYPE" "PNLIPRP2 WILD-TYPE" 
        TCGA-64-5774         TCGA-64-5775         TCGA-64-5778 
  "PNLIPRP2 MUTATED" "PNLIPRP2 WILD-TYPE" "PNLIPRP2 WILD-TYPE" 
        TCGA-64-5779         TCGA-64-5781         TCGA-64-5815 
"PNLIPRP2 WILD-TYPE" "PNLIPRP2 WILD-TYPE" "PNLIPRP2 WILD-TYPE" 
        TCGA-67-3770         TCGA-67-3771         TCGA-67-3772 
"PNLIPRP2 WILD-TYPE" "PNLIPRP2 WILD-TYPE" "PNLIPRP2 WILD-TYPE" 
        TCGA-67-3773         TCGA-67-3774         TCGA-67-6215 
"PNLIPRP2 WILD-TYPE" "PNLIPRP2 WILD-TYPE" "PNLIPRP2 WILD-TYPE" 
        TCGA-67-6216         TCGA-67-6217         TCGA-71-6725 
"PNLIPRP2 WILD-TYPE"   "PNLIPRP2 MUTATED" "PNLIPRP2 WILD-TYPE" 
        TCGA-73-4658         TCGA-73-4659         TCGA-73-4662 
"PNLIPRP2 WILD-TYPE" "PNLIPRP2 WILD-TYPE" "PNLIPRP2 WILD-TYPE" 
        TCGA-73-4666         TCGA-73-4668         TCGA-73-4670 
"PNLIPRP2 WILD-TYPE" "PNLIPRP2 WILD-TYPE" "PNLIPRP2 WILD-TYPE" 
        TCGA-73-4675         TCGA-73-4676         TCGA-73-4677 
"PNLIPRP2 WILD-TYPE" "PNLIPRP2 WILD-TYPE" "PNLIPRP2 WILD-TYPE" 
        TCGA-91-6828         TCGA-91-6829         TCGA-91-6831 
"PNLIPRP2 WILD-TYPE" "PNLIPRP2 WILD-TYPE" "PNLIPRP2 WILD-TYPE" 
        TCGA-91-6835         TCGA-91-6836 
"PNLIPRP2 WILD-TYPE" "PNLIPRP2 WILD-TYPE" 
        TCGA-05-4249         TCGA-05-4250         TCGA-05-4382 
"PNLIPRP2 WILD-TYPE" "PNLIPRP2 WILD-TYPE" "PNLIPRP2 WILD-TYPE" 
        TCGA-05-4384         TCGA-05-4390         TCGA-05-4396 
"PNLIPRP2 WILD-TYPE" "PNLIPRP2 WILD-TYPE" "PNLIPRP2 WILD-TYPE" 
        TCGA-05-4397         TCGA-05-4398         TCGA-05-4402 
"PNLIPRP2 WILD-TYPE" "PNLIPRP2 WILD-TYPE" "PNLIPRP2 WILD-TYPE" 
        TCGA-05-4405         TCGA-05-4415         TCGA-05-4417 
"PNLIPRP2 WILD-TYPE" "PNLIPRP2 WILD-TYPE" "PNLIPRP2 WILD-TYPE" 
        TCGA-05-4418         TCGA-05-4420         TCGA-05-4424 
"PNLIPRP2 WILD-TYPE" "PNLIPRP2 WILD-TYPE" "PNLIPRP2 WILD-TYPE" 
        TCGA-05-4426         TCGA-05-4427         TCGA-05-4430 
"PNLIPRP2 WILD-TYPE" "PNLIPRP2 WILD-TYPE" "PNLIPRP2 WILD-TYPE" 
        TCGA-05-4432         TCGA-05-4433         TCGA-05-4434 
  "PNLIPRP2 MUTATED" "PNLIPRP2 WILD-TYPE" "PNLIPRP2 WILD-TYPE" 
        TCGA-05-5420         TCGA-05-5423         TCGA-05-5425 
"PNLIPRP2 WILD-TYPE" "PNLIPRP2 WILD-TYPE" "PNLIPRP2 WILD-TYPE" 
        TCGA-05-5429         TCGA-05-5715         TCGA-35-3615 
"PNLIPRP2 WILD-TYPE" "PNLIPRP2 WILD-TYPE" "PNLIPRP2 WILD-TYPE" 
        TCGA-35-4122         TCGA-35-4123         TCGA-35-5375 
"PNLIPRP2 WILD-TYPE" "PNLIPRP2 WILD-TYPE" "PNLIPRP2 WILD-TYPE" 
        TCGA-38-4625         TCGA-38-4626         TCGA-38-4627 
"PNLIPRP2 WILD-TYPE" "PNLIPRP2 WILD-TYPE" "PNLIPRP2 WILD-TYPE" 
        TCGA-38-4628         TCGA-38-4629         TCGA-38-4630 
"PNLIPRP2 WILD-TYPE" "PNLIPRP2 WILD-TYPE" "PNLIPRP2 WILD-TYPE" 
        TCGA-38-4631         TCGA-38-4632         TCGA-38-6178 
"PNLIPRP2 WILD-TYPE" "PNLIPRP2 WILD-TYPE" "PNLIPRP2 WILD-TYPE" 
        TCGA-44-2655         TCGA-44-2656         TCGA-44-2657 
"PNLIPRP2 WILD-TYPE" "PNLIPRP2 WILD-TYPE" "PNLIPRP2 WILD-TYPE" 
        TCGA-44-2659         TCGA-44-2661         TCGA-44-2662 
"PNLIPRP2 WILD-TYPE" "PNLIPRP2 WILD-TYPE" "PNLIPRP2 WILD-TYPE" 
        TCGA-44-2665         TCGA-44-2666         TCGA-44-2668 
"PNLIPRP2 WILD-TYPE" "PNLIPRP2 WILD-TYPE" "PNLIPRP2 WILD-TYPE" 
        TCGA-44-3396         TCGA-44-3398         TCGA-44-3918 
"PNLIPRP2 WILD-TYPE" "PNLIPRP2 WILD-TYPE" "PNLIPRP2 WILD-TYPE" 
        TCGA-44-3919         TCGA-44-4112         TCGA-44-5643 
"PNLIPRP2 WILD-TYPE" "PNLIPRP2 WILD-TYPE" "PNLIPRP2 WILD-TYPE" 
        TCGA-44-5645         TCGA-44-6144         TCGA-44-6145 
"PNLIPRP2 WILD-TYPE" "PNLIPRP2 WILD-TYPE" "PNLIPRP2 WILD-TYPE" 
        TCGA-44-6146         TCGA-44-6147         TCGA-44-6148 
"PNLIPRP2 WILD-TYPE" "PNLIPRP2 WILD-TYPE" "PNLIPRP2 WILD-TYPE" 
        TCGA-44-6774         TCGA-44-6775         TCGA-44-6776 
"PNLIPRP2 WILD-TYPE" "PNLIPRP2 WILD-TYPE" "PNLIPRP2 WILD-TYPE" 
        TCGA-44-6777         TCGA-44-6778         TCGA-44-6779 
"PNLIPRP2 WILD-TYPE" "PNLIPRP2 WILD-TYPE" "PNLIPRP2 WILD-TYPE" 
        TCGA-49-4486         TCGA-49-4487         TCGA-49-4488 
"PNLIPRP2 WILD-TYPE" "PNLIPRP2 WILD-TYPE" "PNLIPRP2 WILD-TYPE" 
        TCGA-49-4490         TCGA-49-4494         TCGA-49-4501 
"PNLIPRP2 WILD-TYPE" "PNLIPRP2 WILD-TYPE" "PNLIPRP2 WILD-TYPE" 
        TCGA-49-4505         TCGA-49-4506         TCGA-49-4507 
"PNLIPRP2 WILD-TYPE" "PNLIPRP2 WILD-TYPE" "PNLIPRP2 WILD-TYPE" 
        TCGA-49-4510         TCGA-49-4512         TCGA-49-4514 
"PNLIPRP2 WILD-TYPE" "PNLIPRP2 WILD-TYPE" "PNLIPRP2 WILD-TYPE" 
        TCGA-49-6742         TCGA-49-6743         TCGA-49-6744 
"PNLIPRP2 WILD-TYPE" "PNLIPRP2 WILD-TYPE" "PNLIPRP2 WILD-TYPE" 
        TCGA-49-6745         TCGA-50-5044         TCGA-50-5045 
"PNLIPRP2 WILD-TYPE" "PNLIPRP2 WILD-TYPE" "PNLIPRP2 WILD-TYPE" 
        TCGA-50-5049         TCGA-50-5051         TCGA-50-5055 
"PNLIPRP2 WILD-TYPE" "PNLIPRP2 WILD-TYPE" "PNLIPRP2 WILD-TYPE" 
        TCGA-50-5066         TCGA-50-5068         TCGA-50-5072 
"PNLIPRP2 WILD-TYPE" "PNLIPRP2 WILD-TYPE" "PNLIPRP2 WILD-TYPE" 
        TCGA-50-5930         TCGA-50-5931         TCGA-50-5932 
"PNLIPRP2 WILD-TYPE" "PNLIPRP2 WILD-TYPE" "PNLIPRP2 WILD-TYPE" 
        TCGA-50-5933         TCGA-50-5935         TCGA-50-5936 
"PNLIPRP2 WILD-TYPE" "PNLIPRP2 WILD-TYPE" "PNLIPRP2 WILD-TYPE" 
        TCGA-50-5939         TCGA-50-5941         TCGA-50-5942 
"PNLIPRP2 WILD-TYPE"   "PNLIPRP2 MUTATED" "PNLIPRP2 WILD-TYPE" 
        TCGA-50-5944         TCGA-50-5946         TCGA-50-6590 
"PNLIPRP2 WILD-TYPE" "PNLIPRP2 WILD-TYPE" "PNLIPRP2 WILD-TYPE" 
        TCGA-50-6591         TCGA-50-6592         TCGA-50-6593 
"PNLIPRP2 WILD-TYPE" "PNLIPRP2 WILD-TYPE" "PNLIPRP2 WILD-TYPE" 
        TCGA-50-6594         TCGA-50-6595         TCGA-50-6597 
"PNLIPRP2 WILD-TYPE" "PNLIPRP2 WILD-TYPE" "PNLIPRP2 WILD-TYPE" 
        TCGA-55-1592         TCGA-55-1594         TCGA-55-1595 
"PNLIPRP2 WILD-TYPE" "PNLIPRP2 WILD-TYPE" "PNLIPRP2 WILD-TYPE" 
        TCGA-55-1596         TCGA-55-5899         TCGA-55-6543 
"PNLIPRP2 WILD-TYPE" "PNLIPRP2 WILD-TYPE" "PNLIPRP2 WILD-TYPE" 
        TCGA-55-6642         TCGA-55-6712         TCGA-64-1676 
"PNLIPRP2 WILD-TYPE" "PNLIPRP2 WILD-TYPE" "PNLIPRP2 WILD-TYPE" 
        TCGA-64-1677         TCGA-64-1678         TCGA-64-1680 
"PNLIPRP2 WILD-TYPE" "PNLIPRP2 WILD-TYPE" "PNLIPRP2 WILD-TYPE" 
        TCGA-64-5774         TCGA-64-5775         TCGA-64-5778 
  "PNLIPRP2 MUTATED" "PNLIPRP2 WILD-TYPE" "PNLIPRP2 WILD-TYPE" 
        TCGA-64-5779         TCGA-64-5781         TCGA-64-5815 
"PNLIPRP2 WILD-TYPE" "PNLIPRP2 WILD-TYPE" "PNLIPRP2 WILD-TYPE" 
        TCGA-67-3770         TCGA-67-3771         TCGA-67-3772 
"PNLIPRP2 WILD-TYPE" "PNLIPRP2 WILD-TYPE" "PNLIPRP2 WILD-TYPE" 
        TCGA-67-3773         TCGA-67-3774         TCGA-67-6215 
"PNLIPRP2 WILD-TYPE" "PNLIPRP2 WILD-TYPE" "PNLIPRP2 WILD-TYPE" 
        TCGA-67-6216         TCGA-67-6217         TCGA-71-6725 
"PNLIPRP2 WILD-TYPE"   "PNLIPRP2 MUTATED" "PNLIPRP2 WILD-TYPE" 
        TCGA-73-4658         TCGA-73-4659         TCGA-73-4662 
"PNLIPRP2 WILD-TYPE" "PNLIPRP2 WILD-TYPE" "PNLIPRP2 WILD-TYPE" 
        TCGA-73-4666         TCGA-73-4668         TCGA-73-4670 
"PNLIPRP2 WILD-TYPE" "PNLIPRP2 WILD-TYPE" "PNLIPRP2 WILD-TYPE" 
        TCGA-73-4675         TCGA-73-4676         TCGA-73-4677 
"PNLIPRP2 WILD-TYPE" "PNLIPRP2 WILD-TYPE" "PNLIPRP2 WILD-TYPE" 
        TCGA-91-6828         TCGA-91-6829         TCGA-91-6831 
"PNLIPRP2 WILD-TYPE" "PNLIPRP2 WILD-TYPE" "PNLIPRP2 WILD-TYPE" 
        TCGA-91-6835         TCGA-91-6836 
"PNLIPRP2 WILD-TYPE" "PNLIPRP2 WILD-TYPE" 
        TCGA-05-4249         TCGA-05-4250         TCGA-05-4382 
"PNLIPRP2 WILD-TYPE" "PNLIPRP2 WILD-TYPE" "PNLIPRP2 WILD-TYPE" 
        TCGA-05-4384         TCGA-05-4390         TCGA-05-4396 
"PNLIPRP2 WILD-TYPE" "PNLIPRP2 WILD-TYPE" "PNLIPRP2 WILD-TYPE" 
        TCGA-05-4397         TCGA-05-4398         TCGA-05-4402 
"PNLIPRP2 WILD-TYPE" "PNLIPRP2 WILD-TYPE" "PNLIPRP2 WILD-TYPE" 
        TCGA-05-4405         TCGA-05-4415         TCGA-05-4417 
"PNLIPRP2 WILD-TYPE" "PNLIPRP2 WILD-TYPE" "PNLIPRP2 WILD-TYPE" 
        TCGA-05-4418         TCGA-05-4420         TCGA-05-4424 
"PNLIPRP2 WILD-TYPE" "PNLIPRP2 WILD-TYPE" "PNLIPRP2 WILD-TYPE" 
        TCGA-05-4426         TCGA-05-4427         TCGA-05-4430 
"PNLIPRP2 WILD-TYPE" "PNLIPRP2 WILD-TYPE" "PNLIPRP2 WILD-TYPE" 
        TCGA-05-4432         TCGA-05-4433         TCGA-05-4434 
  "PNLIPRP2 MUTATED" "PNLIPRP2 WILD-TYPE" "PNLIPRP2 WILD-TYPE" 
        TCGA-05-5420         TCGA-05-5423         TCGA-05-5425 
"PNLIPRP2 WILD-TYPE" "PNLIPRP2 WILD-TYPE" "PNLIPRP2 WILD-TYPE" 
        TCGA-05-5429         TCGA-05-5715         TCGA-35-3615 
"PNLIPRP2 WILD-TYPE" "PNLIPRP2 WILD-TYPE" "PNLIPRP2 WILD-TYPE" 
        TCGA-35-4122         TCGA-35-4123         TCGA-35-5375 
"PNLIPRP2 WILD-TYPE" "PNLIPRP2 WILD-TYPE" "PNLIPRP2 WILD-TYPE" 
        TCGA-38-4625         TCGA-38-4626         TCGA-38-4627 
"PNLIPRP2 WILD-TYPE" "PNLIPRP2 WILD-TYPE" "PNLIPRP2 WILD-TYPE" 
        TCGA-38-4628         TCGA-38-4629         TCGA-38-4630 
"PNLIPRP2 WILD-TYPE" "PNLIPRP2 WILD-TYPE" "PNLIPRP2 WILD-TYPE" 
        TCGA-38-4631         TCGA-38-4632         TCGA-38-6178 
"PNLIPRP2 WILD-TYPE" "PNLIPRP2 WILD-TYPE" "PNLIPRP2 WILD-TYPE" 
        TCGA-44-2655         TCGA-44-2656         TCGA-44-2657 
"PNLIPRP2 WILD-TYPE" "PNLIPRP2 WILD-TYPE" "PNLIPRP2 WILD-TYPE" 
        TCGA-44-2659         TCGA-44-2661         TCGA-44-2662 
"PNLIPRP2 WILD-TYPE" "PNLIPRP2 WILD-TYPE" "PNLIPRP2 WILD-TYPE" 
        TCGA-44-2665         TCGA-44-2666         TCGA-44-2668 
"PNLIPRP2 WILD-TYPE" "PNLIPRP2 WILD-TYPE" "PNLIPRP2 WILD-TYPE" 
        TCGA-44-3396         TCGA-44-3398         TCGA-44-3918 
"PNLIPRP2 WILD-TYPE" "PNLIPRP2 WILD-TYPE" "PNLIPRP2 WILD-TYPE" 
        TCGA-44-3919         TCGA-44-4112         TCGA-44-5643 
"PNLIPRP2 WILD-TYPE" "PNLIPRP2 WILD-TYPE" "PNLIPRP2 WILD-TYPE" 
        TCGA-44-5645         TCGA-44-6144         TCGA-44-6145 
"PNLIPRP2 WILD-TYPE" "PNLIPRP2 WILD-TYPE" "PNLIPRP2 WILD-TYPE" 
        TCGA-44-6146         TCGA-44-6147         TCGA-44-6148 
"PNLIPRP2 WILD-TYPE" "PNLIPRP2 WILD-TYPE" "PNLIPRP2 WILD-TYPE" 
        TCGA-44-6774         TCGA-44-6775         TCGA-44-6776 
"PNLIPRP2 WILD-TYPE" "PNLIPRP2 WILD-TYPE" "PNLIPRP2 WILD-TYPE" 
        TCGA-44-6777         TCGA-44-6778         TCGA-44-6779 
"PNLIPRP2 WILD-TYPE" "PNLIPRP2 WILD-TYPE" "PNLIPRP2 WILD-TYPE" 
        TCGA-49-4486         TCGA-49-4487         TCGA-49-4488 
"PNLIPRP2 WILD-TYPE" "PNLIPRP2 WILD-TYPE" "PNLIPRP2 WILD-TYPE" 
        TCGA-49-4490         TCGA-49-4494         TCGA-49-4501 
"PNLIPRP2 WILD-TYPE" "PNLIPRP2 WILD-TYPE" "PNLIPRP2 WILD-TYPE" 
        TCGA-49-4505         TCGA-49-4506         TCGA-49-4507 
"PNLIPRP2 WILD-TYPE" "PNLIPRP2 WILD-TYPE" "PNLIPRP2 WILD-TYPE" 
        TCGA-49-4510         TCGA-49-4512         TCGA-49-4514 
"PNLIPRP2 WILD-TYPE" "PNLIPRP2 WILD-TYPE" "PNLIPRP2 WILD-TYPE" 
        TCGA-49-6742         TCGA-49-6743         TCGA-49-6744 
"PNLIPRP2 WILD-TYPE" "PNLIPRP2 WILD-TYPE" "PNLIPRP2 WILD-TYPE" 
        TCGA-49-6745         TCGA-50-5044         TCGA-50-5045 
"PNLIPRP2 WILD-TYPE" "PNLIPRP2 WILD-TYPE" "PNLIPRP2 WILD-TYPE" 
        TCGA-50-5049         TCGA-50-5051         TCGA-50-5055 
"PNLIPRP2 WILD-TYPE" "PNLIPRP2 WILD-TYPE" "PNLIPRP2 WILD-TYPE" 
        TCGA-50-5066         TCGA-50-5068         TCGA-50-5072 
"PNLIPRP2 WILD-TYPE" "PNLIPRP2 WILD-TYPE" "PNLIPRP2 WILD-TYPE" 
        TCGA-50-5930         TCGA-50-5931         TCGA-50-5932 
"PNLIPRP2 WILD-TYPE" "PNLIPRP2 WILD-TYPE" "PNLIPRP2 WILD-TYPE" 
        TCGA-50-5933         TCGA-50-5935         TCGA-50-5936 
"PNLIPRP2 WILD-TYPE" "PNLIPRP2 WILD-TYPE" "PNLIPRP2 WILD-TYPE" 
        TCGA-50-5939         TCGA-50-5941         TCGA-50-5942 
"PNLIPRP2 WILD-TYPE"   "PNLIPRP2 MUTATED" "PNLIPRP2 WILD-TYPE" 
        TCGA-50-5944         TCGA-50-5946         TCGA-50-6590 
"PNLIPRP2 WILD-TYPE" "PNLIPRP2 WILD-TYPE" "PNLIPRP2 WILD-TYPE" 
        TCGA-50-6591         TCGA-50-6592         TCGA-50-6593 
"PNLIPRP2 WILD-TYPE" "PNLIPRP2 WILD-TYPE" "PNLIPRP2 WILD-TYPE" 
        TCGA-50-6594         TCGA-50-6595         TCGA-50-6597 
"PNLIPRP2 WILD-TYPE" "PNLIPRP2 WILD-TYPE" "PNLIPRP2 WILD-TYPE" 
        TCGA-55-1592         TCGA-55-1594         TCGA-55-1595 
"PNLIPRP2 WILD-TYPE" "PNLIPRP2 WILD-TYPE" "PNLIPRP2 WILD-TYPE" 
        TCGA-55-1596         TCGA-55-5899         TCGA-55-6543 
"PNLIPRP2 WILD-TYPE" "PNLIPRP2 WILD-TYPE" "PNLIPRP2 WILD-TYPE" 
        TCGA-55-6642         TCGA-55-6712         TCGA-64-1676 
"PNLIPRP2 WILD-TYPE" "PNLIPRP2 WILD-TYPE" "PNLIPRP2 WILD-TYPE" 
        TCGA-64-1677         TCGA-64-1678         TCGA-64-1680 
"PNLIPRP2 WILD-TYPE" "PNLIPRP2 WILD-TYPE" "PNLIPRP2 WILD-TYPE" 
        TCGA-64-5774         TCGA-64-5775         TCGA-64-5778 
  "PNLIPRP2 MUTATED" "PNLIPRP2 WILD-TYPE" "PNLIPRP2 WILD-TYPE" 
        TCGA-64-5779         TCGA-64-5781         TCGA-64-5815 
"PNLIPRP2 WILD-TYPE" "PNLIPRP2 WILD-TYPE" "PNLIPRP2 WILD-TYPE" 
        TCGA-67-3770         TCGA-67-3771         TCGA-67-3772 
"PNLIPRP2 WILD-TYPE" "PNLIPRP2 WILD-TYPE" "PNLIPRP2 WILD-TYPE" 
        TCGA-67-3773         TCGA-67-3774         TCGA-67-6215 
"PNLIPRP2 WILD-TYPE" "PNLIPRP2 WILD-TYPE" "PNLIPRP2 WILD-TYPE" 
        TCGA-67-6216         TCGA-67-6217         TCGA-71-6725 
"PNLIPRP2 WILD-TYPE"   "PNLIPRP2 MUTATED" "PNLIPRP2 WILD-TYPE" 
        TCGA-73-4658         TCGA-73-4659         TCGA-73-4662 
"PNLIPRP2 WILD-TYPE" "PNLIPRP2 WILD-TYPE" "PNLIPRP2 WILD-TYPE" 
        TCGA-73-4666         TCGA-73-4668         TCGA-73-4670 
"PNLIPRP2 WILD-TYPE" "PNLIPRP2 WILD-TYPE" "PNLIPRP2 WILD-TYPE" 
        TCGA-73-4675         TCGA-73-4676         TCGA-73-4677 
"PNLIPRP2 WILD-TYPE" "PNLIPRP2 WILD-TYPE" "PNLIPRP2 WILD-TYPE" 
        TCGA-91-6828         TCGA-91-6829         TCGA-91-6831 
"PNLIPRP2 WILD-TYPE" "PNLIPRP2 WILD-TYPE" "PNLIPRP2 WILD-TYPE" 
        TCGA-91-6835         TCGA-91-6836 
"PNLIPRP2 WILD-TYPE" "PNLIPRP2 WILD-TYPE" 
[1] "hr="   "3e+07"
D256V2, continuous
D256V3, binary
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  PNLIPRP2 MUTATED      2    2
  PNLIPRP2 WILD-TYPE   91   77
        clus
vv       PNLIPRP2 MUTATED PNLIPRP2 WILD-TYPE
  FEMALE                2                 91
  MALE                  2                 77
D256V4, continuous
D256V5, multiclass
D256V6, multiclass
    clus
vv   PNLIPRP2 MUTATED PNLIPRP2 WILD-TYPE
  T1                0                 41
  T2                4                104
  T3                0                 14
  T4                0                  8
D256V7, multiclass
       clus
vv      PNLIPRP2 MUTATED PNLIPRP2 WILD-TYPE
  N0                   1                 94
  N1                   2                 35
  N2+N3                1                 34
D256V8, multiclass
    clus
vv   PNLIPRP2 MUTATED PNLIPRP2 WILD-TYPE
  M0                4                133
  M1                0                  9
  MX                0                 22
D256V9, multiclass
     clus
vv    PNLIPRP2 MUTATED PNLIPRP2 WILD-TYPE
  I                  1                 87
  II                 2                 31
  III                1                 38
  IV                 0                  9
D256V10, binary
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  PNLIPRP2 MUTATED      0    4
  PNLIPRP2 WILD-TYPE   16  152
     clus
vv    PNLIPRP2 MUTATED PNLIPRP2 WILD-TYPE
  NO                 0                 16
  YES                4                152
D256V11, continuous
D256V12, continuous
[1] "Remove cluster labels:" "PNLIPRP2 MUTATED"      
clus
  PNLIPRP2 MUTATED PNLIPRP2 WILD-TYPE 
                 2                 80 
        TCGA-05-4384         TCGA-05-4390         TCGA-05-4396 
"PNLIPRP2 WILD-TYPE" "PNLIPRP2 WILD-TYPE" "PNLIPRP2 WILD-TYPE" 
        TCGA-05-4403         TCGA-05-4405         TCGA-05-4410 
"PNLIPRP2 WILD-TYPE" "PNLIPRP2 WILD-TYPE" "PNLIPRP2 WILD-TYPE" 
        TCGA-05-4415         TCGA-05-4417         TCGA-05-4424 
"PNLIPRP2 WILD-TYPE" "PNLIPRP2 WILD-TYPE" "PNLIPRP2 WILD-TYPE" 
        TCGA-05-4427         TCGA-05-4433         TCGA-05-5420 
"PNLIPRP2 WILD-TYPE" "PNLIPRP2 WILD-TYPE" "PNLIPRP2 WILD-TYPE" 
        TCGA-05-5423         TCGA-05-5425         TCGA-05-5428 
"PNLIPRP2 WILD-TYPE" "PNLIPRP2 WILD-TYPE" "PNLIPRP2 WILD-TYPE" 
        TCGA-35-4122         TCGA-35-4123         TCGA-35-5375 
"PNLIPRP2 WILD-TYPE" "PNLIPRP2 WILD-TYPE" "PNLIPRP2 WILD-TYPE" 
        TCGA-38-4629         TCGA-38-4632         TCGA-44-2655 
"PNLIPRP2 WILD-TYPE" "PNLIPRP2 WILD-TYPE" "PNLIPRP2 WILD-TYPE" 
        TCGA-44-2656         TCGA-44-2657         TCGA-44-2659 
"PNLIPRP2 WILD-TYPE" "PNLIPRP2 WILD-TYPE" "PNLIPRP2 WILD-TYPE" 
        TCGA-44-2662         TCGA-44-2668         TCGA-44-3398 
"PNLIPRP2 WILD-TYPE" "PNLIPRP2 WILD-TYPE" "PNLIPRP2 WILD-TYPE" 
        TCGA-44-3918         TCGA-44-4112         TCGA-44-5645 
"PNLIPRP2 WILD-TYPE" "PNLIPRP2 WILD-TYPE" "PNLIPRP2 WILD-TYPE" 
        TCGA-44-6145         TCGA-44-6146         TCGA-44-6147 
"PNLIPRP2 WILD-TYPE" "PNLIPRP2 WILD-TYPE" "PNLIPRP2 WILD-TYPE" 
        TCGA-44-6148         TCGA-44-6775         TCGA-44-6776 
"PNLIPRP2 WILD-TYPE" "PNLIPRP2 WILD-TYPE" "PNLIPRP2 WILD-TYPE" 
        TCGA-44-6777         TCGA-44-6778         TCGA-44-6779 
"PNLIPRP2 WILD-TYPE" "PNLIPRP2 WILD-TYPE" "PNLIPRP2 WILD-TYPE" 
        TCGA-49-4486         TCGA-49-4488         TCGA-49-4494 
"PNLIPRP2 WILD-TYPE" "PNLIPRP2 WILD-TYPE" "PNLIPRP2 WILD-TYPE" 
        TCGA-49-4505         TCGA-49-4507         TCGA-50-5051 
"PNLIPRP2 WILD-TYPE" "PNLIPRP2 WILD-TYPE" "PNLIPRP2 WILD-TYPE" 
        TCGA-50-5072         TCGA-50-5939         TCGA-50-5942 
"PNLIPRP2 WILD-TYPE" "PNLIPRP2 WILD-TYPE" "PNLIPRP2 WILD-TYPE" 
        TCGA-50-5946         TCGA-50-6590         TCGA-50-6594 
"PNLIPRP2 WILD-TYPE" "PNLIPRP2 WILD-TYPE" "PNLIPRP2 WILD-TYPE" 
        TCGA-50-6595         TCGA-55-1592         TCGA-55-1595 
"PNLIPRP2 WILD-TYPE" "PNLIPRP2 WILD-TYPE" "PNLIPRP2 WILD-TYPE" 
        TCGA-55-6543         TCGA-55-6712         TCGA-64-1678 
"PNLIPRP2 WILD-TYPE" "PNLIPRP2 WILD-TYPE" "PNLIPRP2 WILD-TYPE" 
        TCGA-64-1680         TCGA-64-5778         TCGA-64-5779 
"PNLIPRP2 WILD-TYPE" "PNLIPRP2 WILD-TYPE" "PNLIPRP2 WILD-TYPE" 
        TCGA-64-5781         TCGA-64-5815         TCGA-73-4659 
"PNLIPRP2 WILD-TYPE" "PNLIPRP2 WILD-TYPE" "PNLIPRP2 WILD-TYPE" 
        TCGA-73-4662         TCGA-73-4666         TCGA-73-4668 
"PNLIPRP2 WILD-TYPE" "PNLIPRP2 WILD-TYPE" "PNLIPRP2 WILD-TYPE" 
        TCGA-73-4670         TCGA-73-4675         TCGA-73-4676 
"PNLIPRP2 WILD-TYPE" "PNLIPRP2 WILD-TYPE" "PNLIPRP2 WILD-TYPE" 
        TCGA-73-4677         TCGA-75-5122         TCGA-75-5125 
"PNLIPRP2 WILD-TYPE" "PNLIPRP2 WILD-TYPE" "PNLIPRP2 WILD-TYPE" 
        TCGA-75-5126         TCGA-75-5146         TCGA-75-6206 
"PNLIPRP2 WILD-TYPE" "PNLIPRP2 WILD-TYPE" "PNLIPRP2 WILD-TYPE" 
        TCGA-75-6207         TCGA-80-5611         TCGA-91-6828 
"PNLIPRP2 WILD-TYPE" "PNLIPRP2 WILD-TYPE" "PNLIPRP2 WILD-TYPE" 
        TCGA-91-6829         TCGA-91-6835 
"PNLIPRP2 WILD-TYPE" "PNLIPRP2 WILD-TYPE" 
D256V13, multiclass
                                             clus
vv                                            PNLIPRP2 MUTATED
  CURRENT REFORMED SMOKER FOR < OR = 15 YEARS                1
  CURRENT REFORMED SMOKER FOR > 15 YEARS                     1
  CURRENT SMOKER                                             2
  LIFELONG NON-SMOKER                                        0
                                             clus
vv                                            PNLIPRP2 WILD-TYPE
  CURRENT REFORMED SMOKER FOR < OR = 15 YEARS                 61
  CURRENT REFORMED SMOKER FOR > 15 YEARS                      45
  CURRENT SMOKER                                              26
  LIFELONG NON-SMOKER                                         24
D256V14, continuous
[1] "Remove cluster labels:" "PNLIPRP2 MUTATED"      
clus
  PNLIPRP2 MUTATED PNLIPRP2 WILD-TYPE 
                 1                 67 
        TCGA-05-4384         TCGA-05-4390         TCGA-05-4396 
"PNLIPRP2 WILD-TYPE" "PNLIPRP2 WILD-TYPE" "PNLIPRP2 WILD-TYPE" 
        TCGA-05-4405         TCGA-05-4410         TCGA-05-4415 
"PNLIPRP2 WILD-TYPE" "PNLIPRP2 WILD-TYPE" "PNLIPRP2 WILD-TYPE" 
        TCGA-05-4417         TCGA-05-4424         TCGA-05-4427 
"PNLIPRP2 WILD-TYPE" "PNLIPRP2 WILD-TYPE" "PNLIPRP2 WILD-TYPE" 
        TCGA-05-4433         TCGA-05-5420         TCGA-05-5423 
"PNLIPRP2 WILD-TYPE" "PNLIPRP2 WILD-TYPE" "PNLIPRP2 WILD-TYPE" 
        TCGA-05-5425         TCGA-05-5428         TCGA-35-4122 
"PNLIPRP2 WILD-TYPE" "PNLIPRP2 WILD-TYPE" "PNLIPRP2 WILD-TYPE" 
        TCGA-35-4123         TCGA-35-5375         TCGA-38-4625 
"PNLIPRP2 WILD-TYPE" "PNLIPRP2 WILD-TYPE" "PNLIPRP2 WILD-TYPE" 
        TCGA-38-4626         TCGA-44-2655         TCGA-44-2656 
"PNLIPRP2 WILD-TYPE" "PNLIPRP2 WILD-TYPE" "PNLIPRP2 WILD-TYPE" 
        TCGA-44-2657         TCGA-44-2659         TCGA-44-2662 
"PNLIPRP2 WILD-TYPE" "PNLIPRP2 WILD-TYPE" "PNLIPRP2 WILD-TYPE" 
        TCGA-44-2666         TCGA-44-2668         TCGA-44-3396 
"PNLIPRP2 WILD-TYPE" "PNLIPRP2 WILD-TYPE" "PNLIPRP2 WILD-TYPE" 
        TCGA-44-3398         TCGA-44-3918         TCGA-44-4112 
"PNLIPRP2 WILD-TYPE" "PNLIPRP2 WILD-TYPE" "PNLIPRP2 WILD-TYPE" 
        TCGA-44-5645         TCGA-44-6144         TCGA-44-6145 
"PNLIPRP2 WILD-TYPE" "PNLIPRP2 WILD-TYPE" "PNLIPRP2 WILD-TYPE" 
        TCGA-44-6147         TCGA-44-6148         TCGA-44-6774 
"PNLIPRP2 WILD-TYPE" "PNLIPRP2 WILD-TYPE" "PNLIPRP2 WILD-TYPE" 
        TCGA-44-6775         TCGA-44-6776         TCGA-44-6777 
"PNLIPRP2 WILD-TYPE" "PNLIPRP2 WILD-TYPE" "PNLIPRP2 WILD-TYPE" 
        TCGA-44-6778         TCGA-44-6779         TCGA-49-4486 
"PNLIPRP2 WILD-TYPE" "PNLIPRP2 WILD-TYPE" "PNLIPRP2 WILD-TYPE" 
        TCGA-49-4494         TCGA-49-4505         TCGA-55-1592 
"PNLIPRP2 WILD-TYPE" "PNLIPRP2 WILD-TYPE" "PNLIPRP2 WILD-TYPE" 
        TCGA-55-1594         TCGA-55-1595         TCGA-55-1596 
"PNLIPRP2 WILD-TYPE" "PNLIPRP2 WILD-TYPE" "PNLIPRP2 WILD-TYPE" 
        TCGA-55-5899         TCGA-55-6642         TCGA-55-6712 
"PNLIPRP2 WILD-TYPE" "PNLIPRP2 WILD-TYPE" "PNLIPRP2 WILD-TYPE" 
        TCGA-64-1677         TCGA-64-1678         TCGA-64-1680 
"PNLIPRP2 WILD-TYPE" "PNLIPRP2 WILD-TYPE" "PNLIPRP2 WILD-TYPE" 
        TCGA-64-5775         TCGA-64-5778         TCGA-64-5779 
"PNLIPRP2 WILD-TYPE" "PNLIPRP2 WILD-TYPE" "PNLIPRP2 WILD-TYPE" 
        TCGA-64-5781         TCGA-73-4659         TCGA-73-4662 
"PNLIPRP2 WILD-TYPE" "PNLIPRP2 WILD-TYPE" "PNLIPRP2 WILD-TYPE" 
        TCGA-73-4666         TCGA-73-4668         TCGA-73-4670 
"PNLIPRP2 WILD-TYPE" "PNLIPRP2 WILD-TYPE" "PNLIPRP2 WILD-TYPE" 
        TCGA-73-4675         TCGA-73-4676         TCGA-91-6829 
"PNLIPRP2 WILD-TYPE" "PNLIPRP2 WILD-TYPE" "PNLIPRP2 WILD-TYPE" 
        TCGA-91-6836 
"PNLIPRP2 WILD-TYPE" 

Clustering(257) Variable = TBX18 MUTATION ANALYSIS
D257V1, survival
                 sevent
clus2              0  1
  TBX18 MUTATED    6  2
  TBX18 WILD-TYPE 93 48
  TBX18 MUTATED TBX18 WILD-TYPE 
              8             141 
  TBX18 MUTATED TBX18 WILD-TYPE 
              2              48 
$`TBX18 MUTATED`
TCGA-05-4382 TCGA-05-4390 TCGA-05-4396 TCGA-05-4424 TCGA-55-1592 TCGA-67-3774 
       19.92        37.02         9.96        30.02        23.05         0.59 
TCGA-73-4675 TCGA-91-6836 
        1.32         0.36 

$`TBX18 WILD-TYPE`
TCGA-05-4249 TCGA-05-4250 TCGA-05-4384 TCGA-05-4397 TCGA-05-4398 TCGA-05-4402 
       38.07         3.98        14.01        24.03        47.05         8.02 
TCGA-05-4405 TCGA-05-4415 TCGA-05-4417 TCGA-05-4418 TCGA-05-4420 TCGA-05-4426 
       20.05         2.96        14.93         8.98        29.95        26.01 
TCGA-05-4427 TCGA-05-4430 TCGA-05-4432 TCGA-05-4433 TCGA-05-4434 TCGA-05-5420 
       26.01        25.02        25.02        24.00        15.02         1.02 
TCGA-05-5423 TCGA-05-5425 TCGA-05-5429 TCGA-05-5715 TCGA-35-3615 TCGA-35-4122 
        4.96         2.96         0.99         2.04         0.46         7.36 
TCGA-35-4123 TCGA-35-5375 TCGA-38-4625 TCGA-38-4626 TCGA-38-4627 TCGA-38-4628 
        5.95         8.68        47.61        85.32        37.71        49.02 
TCGA-38-4629 TCGA-38-4630 TCGA-38-4631 TCGA-38-4632 TCGA-38-6178 TCGA-44-2655 
       28.37        35.28        11.64        44.61         5.19        18.87 
TCGA-44-2656 TCGA-44-2657 TCGA-44-2659 TCGA-44-2661 TCGA-44-2662 TCGA-44-2665 
       19.10        13.15        17.39         3.39        15.78        13.15 
TCGA-44-2666 TCGA-44-2668 TCGA-44-3396 TCGA-44-3398 TCGA-44-3918 TCGA-44-3919 
        3.19         8.09        10.22         8.32         6.44         6.21 
TCGA-44-4112 TCGA-44-5643 TCGA-44-5645 TCGA-44-6144 TCGA-44-6145 TCGA-44-6146 
        4.60         3.48         6.84         0.30         3.35         9.93 
TCGA-44-6147 TCGA-44-6148 TCGA-44-6774 TCGA-44-6775 TCGA-44-6776 TCGA-44-6777 
        7.76         3.12         5.42         2.70        63.72        32.45 
TCGA-44-6778 TCGA-44-6779 TCGA-49-4486 TCGA-49-4487 TCGA-49-4488 TCGA-49-4490 
       36.49        16.41        76.21        28.11        28.57        12.66 
TCGA-49-4494 TCGA-49-4501 TCGA-49-4505 TCGA-49-4506 TCGA-49-4507 TCGA-49-4510 
       35.54        46.72        14.07        32.84         8.81        29.46 
TCGA-49-4512 TCGA-49-4514 TCGA-49-6742 TCGA-49-6743 TCGA-49-6744 TCGA-49-6745 
       29.75        43.20        15.02        12.13        12.99         4.93 
TCGA-50-5044 TCGA-50-5045 TCGA-50-5049 TCGA-50-5051 TCGA-50-5055 TCGA-50-5066 
       20.48        71.47        48.82        14.96        25.81         9.76 
TCGA-50-5068 TCGA-50-5072 TCGA-50-5930 TCGA-50-5931 TCGA-50-5932 TCGA-50-5933 
       49.28         8.05         9.27         8.78        35.87        77.88 
TCGA-50-5935 TCGA-50-5936 TCGA-50-5939 TCGA-50-5941 TCGA-50-5942 TCGA-50-5944 
       21.47         8.45        15.12         9.37         4.44        12.26 
TCGA-50-5946 TCGA-50-6590 TCGA-50-6591 TCGA-50-6592 TCGA-50-6593 TCGA-50-6594 
       11.47        42.31         3.88        25.51        11.05        12.16 
TCGA-50-6595 TCGA-50-6597 TCGA-55-1594 TCGA-55-1595 TCGA-55-1596 TCGA-55-5899 
        6.21        33.37        38.73        48.62        45.17         2.86 
TCGA-55-6543 TCGA-55-6642 TCGA-55-6712 TCGA-64-1676 TCGA-64-1677 TCGA-64-1678 
        0.07        32.61         0.79        56.81        20.65        39.09 
TCGA-64-1680 TCGA-64-5774 TCGA-64-5775 TCGA-64-5778 TCGA-64-5779 TCGA-64-5781 
       37.02        83.84         0.10        30.44        16.67        39.52 
TCGA-64-5815 TCGA-67-3770 TCGA-67-3771 TCGA-67-3772 TCGA-67-3773 TCGA-67-6215 
        7.33         0.99         1.97         0.59         2.04         0.89 
TCGA-67-6216 TCGA-67-6217 TCGA-71-6725 TCGA-73-4658 TCGA-73-4659 TCGA-73-4662 
        0.69        13.87         2.01        52.57        23.38        29.95 
TCGA-73-4666 TCGA-73-4668 TCGA-73-4670 TCGA-73-4676 TCGA-73-4677 TCGA-91-6828 
       20.28        15.35         0.46         4.01         1.25         1.22 
TCGA-91-6829 TCGA-91-6831 TCGA-91-6835 
       41.33         1.28         1.15 

  TBX18 MUTATED TBX18 WILD-TYPE 
           0.36            0.07 
  TBX18 MUTATED TBX18 WILD-TYPE 
          37.02           85.32 
  TBX18 MUTATED TBX18 WILD-TYPE 
          14.94           13.87 
[1] "0.4 - 37.0 (14.9)" "0.1 - 85.3 (13.9)"
     TCGA-05-4249      TCGA-05-4250      TCGA-05-4382      TCGA-05-4384 
"TBX18 WILD-TYPE" "TBX18 WILD-TYPE"   "TBX18 MUTATED" "TBX18 WILD-TYPE" 
     TCGA-05-4390      TCGA-05-4396      TCGA-05-4397      TCGA-05-4398 
  "TBX18 MUTATED"   "TBX18 MUTATED" "TBX18 WILD-TYPE" "TBX18 WILD-TYPE" 
     TCGA-05-4402      TCGA-05-4405      TCGA-05-4415      TCGA-05-4417 
"TBX18 WILD-TYPE" "TBX18 WILD-TYPE" "TBX18 WILD-TYPE" "TBX18 WILD-TYPE" 
     TCGA-05-4418      TCGA-05-4420      TCGA-05-4424      TCGA-05-4426 
"TBX18 WILD-TYPE" "TBX18 WILD-TYPE"   "TBX18 MUTATED" "TBX18 WILD-TYPE" 
     TCGA-05-4427      TCGA-05-4430      TCGA-05-4432      TCGA-05-4433 
"TBX18 WILD-TYPE" "TBX18 WILD-TYPE" "TBX18 WILD-TYPE" "TBX18 WILD-TYPE" 
     TCGA-05-4434      TCGA-05-5420      TCGA-05-5423      TCGA-05-5425 
"TBX18 WILD-TYPE" "TBX18 WILD-TYPE" "TBX18 WILD-TYPE" "TBX18 WILD-TYPE" 
     TCGA-05-5429      TCGA-05-5715      TCGA-35-3615      TCGA-35-4122 
"TBX18 WILD-TYPE" "TBX18 WILD-TYPE" "TBX18 WILD-TYPE" "TBX18 WILD-TYPE" 
     TCGA-35-4123      TCGA-35-5375      TCGA-38-4625      TCGA-38-4626 
"TBX18 WILD-TYPE" "TBX18 WILD-TYPE" "TBX18 WILD-TYPE" "TBX18 WILD-TYPE" 
     TCGA-38-4627      TCGA-38-4628      TCGA-38-4629      TCGA-38-4630 
"TBX18 WILD-TYPE" "TBX18 WILD-TYPE" "TBX18 WILD-TYPE" "TBX18 WILD-TYPE" 
     TCGA-38-4631      TCGA-38-4632      TCGA-38-6178      TCGA-44-2655 
"TBX18 WILD-TYPE" "TBX18 WILD-TYPE" "TBX18 WILD-TYPE" "TBX18 WILD-TYPE" 
     TCGA-44-2656      TCGA-44-2657      TCGA-44-2659      TCGA-44-2661 
"TBX18 WILD-TYPE" "TBX18 WILD-TYPE" "TBX18 WILD-TYPE" "TBX18 WILD-TYPE" 
     TCGA-44-2662      TCGA-44-2665      TCGA-44-2666      TCGA-44-2668 
"TBX18 WILD-TYPE" "TBX18 WILD-TYPE" "TBX18 WILD-TYPE" "TBX18 WILD-TYPE" 
     TCGA-44-3396      TCGA-44-3398      TCGA-44-3918      TCGA-44-3919 
"TBX18 WILD-TYPE" "TBX18 WILD-TYPE" "TBX18 WILD-TYPE" "TBX18 WILD-TYPE" 
     TCGA-44-4112      TCGA-44-5643      TCGA-44-5645      TCGA-44-6144 
"TBX18 WILD-TYPE" "TBX18 WILD-TYPE" "TBX18 WILD-TYPE" "TBX18 WILD-TYPE" 
     TCGA-44-6145      TCGA-44-6146      TCGA-44-6147      TCGA-44-6148 
"TBX18 WILD-TYPE" "TBX18 WILD-TYPE" "TBX18 WILD-TYPE" "TBX18 WILD-TYPE" 
     TCGA-44-6774      TCGA-44-6775      TCGA-44-6776      TCGA-44-6777 
"TBX18 WILD-TYPE" "TBX18 WILD-TYPE" "TBX18 WILD-TYPE" "TBX18 WILD-TYPE" 
     TCGA-44-6778      TCGA-44-6779      TCGA-49-4486      TCGA-49-4487 
"TBX18 WILD-TYPE" "TBX18 WILD-TYPE" "TBX18 WILD-TYPE" "TBX18 WILD-TYPE" 
     TCGA-49-4488      TCGA-49-4490      TCGA-49-4494      TCGA-49-4501 
"TBX18 WILD-TYPE" "TBX18 WILD-TYPE" "TBX18 WILD-TYPE" "TBX18 WILD-TYPE" 
     TCGA-49-4505      TCGA-49-4506      TCGA-49-4507      TCGA-49-4510 
"TBX18 WILD-TYPE" "TBX18 WILD-TYPE" "TBX18 WILD-TYPE" "TBX18 WILD-TYPE" 
     TCGA-49-4512      TCGA-49-4514      TCGA-49-6742      TCGA-49-6743 
"TBX18 WILD-TYPE" "TBX18 WILD-TYPE" "TBX18 WILD-TYPE" "TBX18 WILD-TYPE" 
     TCGA-49-6744      TCGA-49-6745      TCGA-50-5044      TCGA-50-5045 
"TBX18 WILD-TYPE" "TBX18 WILD-TYPE" "TBX18 WILD-TYPE" "TBX18 WILD-TYPE" 
     TCGA-50-5049      TCGA-50-5051      TCGA-50-5055      TCGA-50-5066 
"TBX18 WILD-TYPE" "TBX18 WILD-TYPE" "TBX18 WILD-TYPE" "TBX18 WILD-TYPE" 
     TCGA-50-5068      TCGA-50-5072      TCGA-50-5930      TCGA-50-5931 
"TBX18 WILD-TYPE" "TBX18 WILD-TYPE" "TBX18 WILD-TYPE" "TBX18 WILD-TYPE" 
     TCGA-50-5932      TCGA-50-5933      TCGA-50-5935      TCGA-50-5936 
"TBX18 WILD-TYPE" "TBX18 WILD-TYPE" "TBX18 WILD-TYPE" "TBX18 WILD-TYPE" 
     TCGA-50-5939      TCGA-50-5941      TCGA-50-5942      TCGA-50-5944 
"TBX18 WILD-TYPE" "TBX18 WILD-TYPE" "TBX18 WILD-TYPE" "TBX18 WILD-TYPE" 
     TCGA-50-5946      TCGA-50-6590      TCGA-50-6591      TCGA-50-6592 
"TBX18 WILD-TYPE" "TBX18 WILD-TYPE" "TBX18 WILD-TYPE" "TBX18 WILD-TYPE" 
     TCGA-50-6593      TCGA-50-6594      TCGA-50-6595      TCGA-50-6597 
"TBX18 WILD-TYPE" "TBX18 WILD-TYPE" "TBX18 WILD-TYPE" "TBX18 WILD-TYPE" 
     TCGA-55-1592      TCGA-55-1594      TCGA-55-1595      TCGA-55-1596 
  "TBX18 MUTATED" "TBX18 WILD-TYPE" "TBX18 WILD-TYPE" "TBX18 WILD-TYPE" 
     TCGA-55-5899      TCGA-55-6543      TCGA-55-6642      TCGA-55-6712 
"TBX18 WILD-TYPE" "TBX18 WILD-TYPE" "TBX18 WILD-TYPE" "TBX18 WILD-TYPE" 
     TCGA-64-1676      TCGA-64-1677      TCGA-64-1678      TCGA-64-1680 
"TBX18 WILD-TYPE" "TBX18 WILD-TYPE" "TBX18 WILD-TYPE" "TBX18 WILD-TYPE" 
     TCGA-64-5774      TCGA-64-5775      TCGA-64-5778      TCGA-64-5779 
"TBX18 WILD-TYPE" "TBX18 WILD-TYPE" "TBX18 WILD-TYPE" "TBX18 WILD-TYPE" 
     TCGA-64-5781      TCGA-64-5815      TCGA-67-3770      TCGA-67-3771 
"TBX18 WILD-TYPE" "TBX18 WILD-TYPE" "TBX18 WILD-TYPE" "TBX18 WILD-TYPE" 
     TCGA-67-3772      TCGA-67-3773      TCGA-67-3774      TCGA-67-6215 
"TBX18 WILD-TYPE" "TBX18 WILD-TYPE"   "TBX18 MUTATED" "TBX18 WILD-TYPE" 
     TCGA-67-6216      TCGA-67-6217      TCGA-71-6725      TCGA-73-4658 
"TBX18 WILD-TYPE" "TBX18 WILD-TYPE" "TBX18 WILD-TYPE" "TBX18 WILD-TYPE" 
     TCGA-73-4659      TCGA-73-4662      TCGA-73-4666      TCGA-73-4668 
"TBX18 WILD-TYPE" "TBX18 WILD-TYPE" "TBX18 WILD-TYPE" "TBX18 WILD-TYPE" 
     TCGA-73-4670      TCGA-73-4675      TCGA-73-4676      TCGA-73-4677 
"TBX18 WILD-TYPE"   "TBX18 MUTATED" "TBX18 WILD-TYPE" "TBX18 WILD-TYPE" 
     TCGA-91-6828      TCGA-91-6829      TCGA-91-6831      TCGA-91-6835 
"TBX18 WILD-TYPE" "TBX18 WILD-TYPE" "TBX18 WILD-TYPE" "TBX18 WILD-TYPE" 
     TCGA-91-6836 
  "TBX18 MUTATED" 
     TCGA-05-4249      TCGA-05-4250      TCGA-05-4382      TCGA-05-4384 
"TBX18 WILD-TYPE" "TBX18 WILD-TYPE"   "TBX18 MUTATED" "TBX18 WILD-TYPE" 
     TCGA-05-4390      TCGA-05-4396      TCGA-05-4397      TCGA-05-4398 
  "TBX18 MUTATED"   "TBX18 MUTATED" "TBX18 WILD-TYPE" "TBX18 WILD-TYPE" 
     TCGA-05-4402      TCGA-05-4405      TCGA-05-4415      TCGA-05-4417 
"TBX18 WILD-TYPE" "TBX18 WILD-TYPE" "TBX18 WILD-TYPE" "TBX18 WILD-TYPE" 
     TCGA-05-4418      TCGA-05-4420      TCGA-05-4424      TCGA-05-4426 
"TBX18 WILD-TYPE" "TBX18 WILD-TYPE"   "TBX18 MUTATED" "TBX18 WILD-TYPE" 
     TCGA-05-4427      TCGA-05-4430      TCGA-05-4432      TCGA-05-4433 
"TBX18 WILD-TYPE" "TBX18 WILD-TYPE" "TBX18 WILD-TYPE" "TBX18 WILD-TYPE" 
     TCGA-05-4434      TCGA-05-5420      TCGA-05-5423      TCGA-05-5425 
"TBX18 WILD-TYPE" "TBX18 WILD-TYPE" "TBX18 WILD-TYPE" "TBX18 WILD-TYPE" 
     TCGA-05-5429      TCGA-05-5715      TCGA-35-3615      TCGA-35-4122 
"TBX18 WILD-TYPE" "TBX18 WILD-TYPE" "TBX18 WILD-TYPE" "TBX18 WILD-TYPE" 
     TCGA-35-4123      TCGA-35-5375      TCGA-38-4625      TCGA-38-4626 
"TBX18 WILD-TYPE" "TBX18 WILD-TYPE" "TBX18 WILD-TYPE" "TBX18 WILD-TYPE" 
     TCGA-38-4627      TCGA-38-4628      TCGA-38-4629      TCGA-38-4630 
"TBX18 WILD-TYPE" "TBX18 WILD-TYPE" "TBX18 WILD-TYPE" "TBX18 WILD-TYPE" 
     TCGA-38-4631      TCGA-38-4632      TCGA-38-6178      TCGA-44-2655 
"TBX18 WILD-TYPE" "TBX18 WILD-TYPE" "TBX18 WILD-TYPE" "TBX18 WILD-TYPE" 
     TCGA-44-2656      TCGA-44-2657      TCGA-44-2659      TCGA-44-2661 
"TBX18 WILD-TYPE" "TBX18 WILD-TYPE" "TBX18 WILD-TYPE" "TBX18 WILD-TYPE" 
     TCGA-44-2662      TCGA-44-2665      TCGA-44-2666      TCGA-44-2668 
"TBX18 WILD-TYPE" "TBX18 WILD-TYPE" "TBX18 WILD-TYPE" "TBX18 WILD-TYPE" 
     TCGA-44-3396      TCGA-44-3398      TCGA-44-3918      TCGA-44-3919 
"TBX18 WILD-TYPE" "TBX18 WILD-TYPE" "TBX18 WILD-TYPE" "TBX18 WILD-TYPE" 
     TCGA-44-4112      TCGA-44-5643      TCGA-44-5645      TCGA-44-6144 
"TBX18 WILD-TYPE" "TBX18 WILD-TYPE" "TBX18 WILD-TYPE" "TBX18 WILD-TYPE" 
     TCGA-44-6145      TCGA-44-6146      TCGA-44-6147      TCGA-44-6148 
"TBX18 WILD-TYPE" "TBX18 WILD-TYPE" "TBX18 WILD-TYPE" "TBX18 WILD-TYPE" 
     TCGA-44-6774      TCGA-44-6775      TCGA-44-6776      TCGA-44-6777 
"TBX18 WILD-TYPE" "TBX18 WILD-TYPE" "TBX18 WILD-TYPE" "TBX18 WILD-TYPE" 
     TCGA-44-6778      TCGA-44-6779      TCGA-49-4486      TCGA-49-4487 
"TBX18 WILD-TYPE" "TBX18 WILD-TYPE" "TBX18 WILD-TYPE" "TBX18 WILD-TYPE" 
     TCGA-49-4488      TCGA-49-4490      TCGA-49-4494      TCGA-49-4501 
"TBX18 WILD-TYPE" "TBX18 WILD-TYPE" "TBX18 WILD-TYPE" "TBX18 WILD-TYPE" 
     TCGA-49-4505      TCGA-49-4506      TCGA-49-4507      TCGA-49-4510 
"TBX18 WILD-TYPE" "TBX18 WILD-TYPE" "TBX18 WILD-TYPE" "TBX18 WILD-TYPE" 
     TCGA-49-4512      TCGA-49-4514      TCGA-49-6742      TCGA-49-6743 
"TBX18 WILD-TYPE" "TBX18 WILD-TYPE" "TBX18 WILD-TYPE" "TBX18 WILD-TYPE" 
     TCGA-49-6744      TCGA-49-6745      TCGA-50-5044      TCGA-50-5045 
"TBX18 WILD-TYPE" "TBX18 WILD-TYPE" "TBX18 WILD-TYPE" "TBX18 WILD-TYPE" 
     TCGA-50-5049      TCGA-50-5051      TCGA-50-5055      TCGA-50-5066 
"TBX18 WILD-TYPE" "TBX18 WILD-TYPE" "TBX18 WILD-TYPE" "TBX18 WILD-TYPE" 
     TCGA-50-5068      TCGA-50-5072      TCGA-50-5930      TCGA-50-5931 
"TBX18 WILD-TYPE" "TBX18 WILD-TYPE" "TBX18 WILD-TYPE" "TBX18 WILD-TYPE" 
     TCGA-50-5932      TCGA-50-5933      TCGA-50-5935      TCGA-50-5936 
"TBX18 WILD-TYPE" "TBX18 WILD-TYPE" "TBX18 WILD-TYPE" "TBX18 WILD-TYPE" 
     TCGA-50-5939      TCGA-50-5941      TCGA-50-5942      TCGA-50-5944 
"TBX18 WILD-TYPE" "TBX18 WILD-TYPE" "TBX18 WILD-TYPE" "TBX18 WILD-TYPE" 
     TCGA-50-5946      TCGA-50-6590      TCGA-50-6591      TCGA-50-6592 
"TBX18 WILD-TYPE" "TBX18 WILD-TYPE" "TBX18 WILD-TYPE" "TBX18 WILD-TYPE" 
     TCGA-50-6593      TCGA-50-6594      TCGA-50-6595      TCGA-50-6597 
"TBX18 WILD-TYPE" "TBX18 WILD-TYPE" "TBX18 WILD-TYPE" "TBX18 WILD-TYPE" 
     TCGA-55-1592      TCGA-55-1594      TCGA-55-1595      TCGA-55-1596 
  "TBX18 MUTATED" "TBX18 WILD-TYPE" "TBX18 WILD-TYPE" "TBX18 WILD-TYPE" 
     TCGA-55-5899      TCGA-55-6543      TCGA-55-6642      TCGA-55-6712 
"TBX18 WILD-TYPE" "TBX18 WILD-TYPE" "TBX18 WILD-TYPE" "TBX18 WILD-TYPE" 
     TCGA-64-1676      TCGA-64-1677      TCGA-64-1678      TCGA-64-1680 
"TBX18 WILD-TYPE" "TBX18 WILD-TYPE" "TBX18 WILD-TYPE" "TBX18 WILD-TYPE" 
     TCGA-64-5774      TCGA-64-5775      TCGA-64-5778      TCGA-64-5779 
"TBX18 WILD-TYPE" "TBX18 WILD-TYPE" "TBX18 WILD-TYPE" "TBX18 WILD-TYPE" 
     TCGA-64-5781      TCGA-64-5815      TCGA-67-3770      TCGA-67-3771 
"TBX18 WILD-TYPE" "TBX18 WILD-TYPE" "TBX18 WILD-TYPE" "TBX18 WILD-TYPE" 
     TCGA-67-3772      TCGA-67-3773      TCGA-67-3774      TCGA-67-6215 
"TBX18 WILD-TYPE" "TBX18 WILD-TYPE"   "TBX18 MUTATED" "TBX18 WILD-TYPE" 
     TCGA-67-6216      TCGA-67-6217      TCGA-71-6725      TCGA-73-4658 
"TBX18 WILD-TYPE" "TBX18 WILD-TYPE" "TBX18 WILD-TYPE" "TBX18 WILD-TYPE" 
     TCGA-73-4659      TCGA-73-4662      TCGA-73-4666      TCGA-73-4668 
"TBX18 WILD-TYPE" "TBX18 WILD-TYPE" "TBX18 WILD-TYPE" "TBX18 WILD-TYPE" 
     TCGA-73-4670      TCGA-73-4675      TCGA-73-4676      TCGA-73-4677 
"TBX18 WILD-TYPE"   "TBX18 MUTATED" "TBX18 WILD-TYPE" "TBX18 WILD-TYPE" 
     TCGA-91-6828      TCGA-91-6829      TCGA-91-6831      TCGA-91-6835 
"TBX18 WILD-TYPE" "TBX18 WILD-TYPE" "TBX18 WILD-TYPE" "TBX18 WILD-TYPE" 
     TCGA-91-6836 
  "TBX18 MUTATED" 
     TCGA-05-4249      TCGA-05-4250      TCGA-05-4382      TCGA-05-4384 
"TBX18 WILD-TYPE" "TBX18 WILD-TYPE"   "TBX18 MUTATED" "TBX18 WILD-TYPE" 
     TCGA-05-4390      TCGA-05-4396      TCGA-05-4397      TCGA-05-4398 
  "TBX18 MUTATED"   "TBX18 MUTATED" "TBX18 WILD-TYPE" "TBX18 WILD-TYPE" 
     TCGA-05-4402      TCGA-05-4405      TCGA-05-4415      TCGA-05-4417 
"TBX18 WILD-TYPE" "TBX18 WILD-TYPE" "TBX18 WILD-TYPE" "TBX18 WILD-TYPE" 
     TCGA-05-4418      TCGA-05-4420      TCGA-05-4424      TCGA-05-4426 
"TBX18 WILD-TYPE" "TBX18 WILD-TYPE"   "TBX18 MUTATED" "TBX18 WILD-TYPE" 
     TCGA-05-4427      TCGA-05-4430      TCGA-05-4432      TCGA-05-4433 
"TBX18 WILD-TYPE" "TBX18 WILD-TYPE" "TBX18 WILD-TYPE" "TBX18 WILD-TYPE" 
     TCGA-05-4434      TCGA-05-5420      TCGA-05-5423      TCGA-05-5425 
"TBX18 WILD-TYPE" "TBX18 WILD-TYPE" "TBX18 WILD-TYPE" "TBX18 WILD-TYPE" 
     TCGA-05-5429      TCGA-05-5715      TCGA-35-3615      TCGA-35-4122 
"TBX18 WILD-TYPE" "TBX18 WILD-TYPE" "TBX18 WILD-TYPE" "TBX18 WILD-TYPE" 
     TCGA-35-4123      TCGA-35-5375      TCGA-38-4625      TCGA-38-4626 
"TBX18 WILD-TYPE" "TBX18 WILD-TYPE" "TBX18 WILD-TYPE" "TBX18 WILD-TYPE" 
     TCGA-38-4627      TCGA-38-4628      TCGA-38-4629      TCGA-38-4630 
"TBX18 WILD-TYPE" "TBX18 WILD-TYPE" "TBX18 WILD-TYPE" "TBX18 WILD-TYPE" 
     TCGA-38-4631      TCGA-38-4632      TCGA-38-6178      TCGA-44-2655 
"TBX18 WILD-TYPE" "TBX18 WILD-TYPE" "TBX18 WILD-TYPE" "TBX18 WILD-TYPE" 
     TCGA-44-2656      TCGA-44-2657      TCGA-44-2659      TCGA-44-2661 
"TBX18 WILD-TYPE" "TBX18 WILD-TYPE" "TBX18 WILD-TYPE" "TBX18 WILD-TYPE" 
     TCGA-44-2662      TCGA-44-2665      TCGA-44-2666      TCGA-44-2668 
"TBX18 WILD-TYPE" "TBX18 WILD-TYPE" "TBX18 WILD-TYPE" "TBX18 WILD-TYPE" 
     TCGA-44-3396      TCGA-44-3398      TCGA-44-3918      TCGA-44-3919 
"TBX18 WILD-TYPE" "TBX18 WILD-TYPE" "TBX18 WILD-TYPE" "TBX18 WILD-TYPE" 
     TCGA-44-4112      TCGA-44-5643      TCGA-44-5645      TCGA-44-6144 
"TBX18 WILD-TYPE" "TBX18 WILD-TYPE" "TBX18 WILD-TYPE" "TBX18 WILD-TYPE" 
     TCGA-44-6145      TCGA-44-6146      TCGA-44-6147      TCGA-44-6148 
"TBX18 WILD-TYPE" "TBX18 WILD-TYPE" "TBX18 WILD-TYPE" "TBX18 WILD-TYPE" 
     TCGA-44-6774      TCGA-44-6775      TCGA-44-6776      TCGA-44-6777 
"TBX18 WILD-TYPE" "TBX18 WILD-TYPE" "TBX18 WILD-TYPE" "TBX18 WILD-TYPE" 
     TCGA-44-6778      TCGA-44-6779      TCGA-49-4486      TCGA-49-4487 
"TBX18 WILD-TYPE" "TBX18 WILD-TYPE" "TBX18 WILD-TYPE" "TBX18 WILD-TYPE" 
     TCGA-49-4488      TCGA-49-4490      TCGA-49-4494      TCGA-49-4501 
"TBX18 WILD-TYPE" "TBX18 WILD-TYPE" "TBX18 WILD-TYPE" "TBX18 WILD-TYPE" 
     TCGA-49-4505      TCGA-49-4506      TCGA-49-4507      TCGA-49-4510 
"TBX18 WILD-TYPE" "TBX18 WILD-TYPE" "TBX18 WILD-TYPE" "TBX18 WILD-TYPE" 
     TCGA-49-4512      TCGA-49-4514      TCGA-49-6742      TCGA-49-6743 
"TBX18 WILD-TYPE" "TBX18 WILD-TYPE" "TBX18 WILD-TYPE" "TBX18 WILD-TYPE" 
     TCGA-49-6744      TCGA-49-6745      TCGA-50-5044      TCGA-50-5045 
"TBX18 WILD-TYPE" "TBX18 WILD-TYPE" "TBX18 WILD-TYPE" "TBX18 WILD-TYPE" 
     TCGA-50-5049      TCGA-50-5051      TCGA-50-5055      TCGA-50-5066 
"TBX18 WILD-TYPE" "TBX18 WILD-TYPE" "TBX18 WILD-TYPE" "TBX18 WILD-TYPE" 
     TCGA-50-5068      TCGA-50-5072      TCGA-50-5930      TCGA-50-5931 
"TBX18 WILD-TYPE" "TBX18 WILD-TYPE" "TBX18 WILD-TYPE" "TBX18 WILD-TYPE" 
     TCGA-50-5932      TCGA-50-5933      TCGA-50-5935      TCGA-50-5936 
"TBX18 WILD-TYPE" "TBX18 WILD-TYPE" "TBX18 WILD-TYPE" "TBX18 WILD-TYPE" 
     TCGA-50-5939      TCGA-50-5941      TCGA-50-5942      TCGA-50-5944 
"TBX18 WILD-TYPE" "TBX18 WILD-TYPE" "TBX18 WILD-TYPE" "TBX18 WILD-TYPE" 
     TCGA-50-5946      TCGA-50-6590      TCGA-50-6591      TCGA-50-6592 
"TBX18 WILD-TYPE" "TBX18 WILD-TYPE" "TBX18 WILD-TYPE" "TBX18 WILD-TYPE" 
     TCGA-50-6593      TCGA-50-6594      TCGA-50-6595      TCGA-50-6597 
"TBX18 WILD-TYPE" "TBX18 WILD-TYPE" "TBX18 WILD-TYPE" "TBX18 WILD-TYPE" 
     TCGA-55-1592      TCGA-55-1594      TCGA-55-1595      TCGA-55-1596 
  "TBX18 MUTATED" "TBX18 WILD-TYPE" "TBX18 WILD-TYPE" "TBX18 WILD-TYPE" 
     TCGA-55-5899      TCGA-55-6543      TCGA-55-6642      TCGA-55-6712 
"TBX18 WILD-TYPE" "TBX18 WILD-TYPE" "TBX18 WILD-TYPE" "TBX18 WILD-TYPE" 
     TCGA-64-1676      TCGA-64-1677      TCGA-64-1678      TCGA-64-1680 
"TBX18 WILD-TYPE" "TBX18 WILD-TYPE" "TBX18 WILD-TYPE" "TBX18 WILD-TYPE" 
     TCGA-64-5774      TCGA-64-5775      TCGA-64-5778      TCGA-64-5779 
"TBX18 WILD-TYPE" "TBX18 WILD-TYPE" "TBX18 WILD-TYPE" "TBX18 WILD-TYPE" 
     TCGA-64-5781      TCGA-64-5815      TCGA-67-3770      TCGA-67-3771 
"TBX18 WILD-TYPE" "TBX18 WILD-TYPE" "TBX18 WILD-TYPE" "TBX18 WILD-TYPE" 
     TCGA-67-3772      TCGA-67-3773      TCGA-67-3774      TCGA-67-6215 
"TBX18 WILD-TYPE" "TBX18 WILD-TYPE"   "TBX18 MUTATED" "TBX18 WILD-TYPE" 
     TCGA-67-6216      TCGA-67-6217      TCGA-71-6725      TCGA-73-4658 
"TBX18 WILD-TYPE" "TBX18 WILD-TYPE" "TBX18 WILD-TYPE" "TBX18 WILD-TYPE" 
     TCGA-73-4659      TCGA-73-4662      TCGA-73-4666      TCGA-73-4668 
"TBX18 WILD-TYPE" "TBX18 WILD-TYPE" "TBX18 WILD-TYPE" "TBX18 WILD-TYPE" 
     TCGA-73-4670      TCGA-73-4675      TCGA-73-4676      TCGA-73-4677 
"TBX18 WILD-TYPE"   "TBX18 MUTATED" "TBX18 WILD-TYPE" "TBX18 WILD-TYPE" 
     TCGA-91-6828      TCGA-91-6829      TCGA-91-6831      TCGA-91-6835 
"TBX18 WILD-TYPE" "TBX18 WILD-TYPE" "TBX18 WILD-TYPE" "TBX18 WILD-TYPE" 
     TCGA-91-6836 
  "TBX18 MUTATED" 
[1] "hr=" "1.1"
D257V2, continuous
D257V3, binary
[1] "tbl2"
                 cls
clus              [,1] [,2]
  TBX18 MUTATED      3    6
  TBX18 WILD-TYPE   90   73
        clus
vv       TBX18 MUTATED TBX18 WILD-TYPE
  FEMALE             3              90
  MALE               6              73
D257V4, continuous
D257V5, multiclass
D257V6, multiclass
    clus
vv   TBX18 MUTATED TBX18 WILD-TYPE
  T1             0              41
  T2             6             102
  T3             2              12
  T4             1               7
D257V7, multiclass
       clus
vv      TBX18 MUTATED TBX18 WILD-TYPE
  N0                7              88
  N1                2              35
  N2+N3             0              35
D257V8, multiclass
    clus
vv   TBX18 MUTATED TBX18 WILD-TYPE
  M0             8             129
  M1             0               9
  MX             1              21
D257V9, multiclass
     clus
vv    TBX18 MUTATED TBX18 WILD-TYPE
  I               6              82
  II              1              32
  III             2              37
  IV              0               9
D257V10, binary
[1] "tbl2"
                 cls
clus              [,1] [,2]
  TBX18 MUTATED      0    9
  TBX18 WILD-TYPE   16  147
     clus
vv    TBX18 MUTATED TBX18 WILD-TYPE
  NO              0              16
  YES             9             147
D257V11, continuous
D257V12, continuous
D257V13, multiclass
                                             clus
vv                                            TBX18 MUTATED TBX18 WILD-TYPE
  CURRENT REFORMED SMOKER FOR < OR = 15 YEARS             6              56
  CURRENT REFORMED SMOKER FOR > 15 YEARS                  2              44
  CURRENT SMOKER                                          1              27
  LIFELONG NON-SMOKER                                     0              24
D257V14, continuous

Clustering(258) Variable = TRIM48 MUTATION ANALYSIS
D258V1, survival
                  sevent
clus2               0  1
  TRIM48 MUTATED    2  3
  TRIM48 WILD-TYPE 97 47
  TRIM48 MUTATED TRIM48 WILD-TYPE 
               5              144 
  TRIM48 MUTATED TRIM48 WILD-TYPE 
               3               47 
$`TRIM48 MUTATED`
TCGA-05-4396 TCGA-38-4629 TCGA-50-5941 TCGA-50-6594 TCGA-91-6831 
        9.96        28.37         9.37        12.16         1.28 

$`TRIM48 WILD-TYPE`
TCGA-05-4249 TCGA-05-4250 TCGA-05-4382 TCGA-05-4384 TCGA-05-4390 TCGA-05-4397 
       38.07         3.98        19.92        14.01        37.02        24.03 
TCGA-05-4398 TCGA-05-4402 TCGA-05-4405 TCGA-05-4415 TCGA-05-4417 TCGA-05-4418 
       47.05         8.02        20.05         2.96        14.93         8.98 
TCGA-05-4420 TCGA-05-4424 TCGA-05-4426 TCGA-05-4427 TCGA-05-4430 TCGA-05-4432 
       29.95        30.02        26.01        26.01        25.02        25.02 
TCGA-05-4433 TCGA-05-4434 TCGA-05-5420 TCGA-05-5423 TCGA-05-5425 TCGA-05-5429 
       24.00        15.02         1.02         4.96         2.96         0.99 
TCGA-05-5715 TCGA-35-3615 TCGA-35-4122 TCGA-35-4123 TCGA-35-5375 TCGA-38-4625 
        2.04         0.46         7.36         5.95         8.68        47.61 
TCGA-38-4626 TCGA-38-4627 TCGA-38-4628 TCGA-38-4630 TCGA-38-4631 TCGA-38-4632 
       85.32        37.71        49.02        35.28        11.64        44.61 
TCGA-38-6178 TCGA-44-2655 TCGA-44-2656 TCGA-44-2657 TCGA-44-2659 TCGA-44-2661 
        5.19        18.87        19.10        13.15        17.39         3.39 
TCGA-44-2662 TCGA-44-2665 TCGA-44-2666 TCGA-44-2668 TCGA-44-3396 TCGA-44-3398 
       15.78        13.15         3.19         8.09        10.22         8.32 
TCGA-44-3918 TCGA-44-3919 TCGA-44-4112 TCGA-44-5643 TCGA-44-5645 TCGA-44-6144 
        6.44         6.21         4.60         3.48         6.84         0.30 
TCGA-44-6145 TCGA-44-6146 TCGA-44-6147 TCGA-44-6148 TCGA-44-6774 TCGA-44-6775 
        3.35         9.93         7.76         3.12         5.42         2.70 
TCGA-44-6776 TCGA-44-6777 TCGA-44-6778 TCGA-44-6779 TCGA-49-4486 TCGA-49-4487 
       63.72        32.45        36.49        16.41        76.21        28.11 
TCGA-49-4488 TCGA-49-4490 TCGA-49-4494 TCGA-49-4501 TCGA-49-4505 TCGA-49-4506 
       28.57        12.66        35.54        46.72        14.07        32.84 
TCGA-49-4507 TCGA-49-4510 TCGA-49-4512 TCGA-49-4514 TCGA-49-6742 TCGA-49-6743 
        8.81        29.46        29.75        43.20        15.02        12.13 
TCGA-49-6744 TCGA-49-6745 TCGA-50-5044 TCGA-50-5045 TCGA-50-5049 TCGA-50-5051 
       12.99         4.93        20.48        71.47        48.82        14.96 
TCGA-50-5055 TCGA-50-5066 TCGA-50-5068 TCGA-50-5072 TCGA-50-5930 TCGA-50-5931 
       25.81         9.76        49.28         8.05         9.27         8.78 
TCGA-50-5932 TCGA-50-5933 TCGA-50-5935 TCGA-50-5936 TCGA-50-5939 TCGA-50-5942 
       35.87        77.88        21.47         8.45        15.12         4.44 
TCGA-50-5944 TCGA-50-5946 TCGA-50-6590 TCGA-50-6591 TCGA-50-6592 TCGA-50-6593 
       12.26        11.47        42.31         3.88        25.51        11.05 
TCGA-50-6595 TCGA-50-6597 TCGA-55-1592 TCGA-55-1594 TCGA-55-1595 TCGA-55-1596 
        6.21        33.37        23.05        38.73        48.62        45.17 
TCGA-55-5899 TCGA-55-6543 TCGA-55-6642 TCGA-55-6712 TCGA-64-1676 TCGA-64-1677 
        2.86         0.07        32.61         0.79        56.81        20.65 
TCGA-64-1678 TCGA-64-1680 TCGA-64-5774 TCGA-64-5775 TCGA-64-5778 TCGA-64-5779 
       39.09        37.02        83.84         0.10        30.44        16.67 
TCGA-64-5781 TCGA-64-5815 TCGA-67-3770 TCGA-67-3771 TCGA-67-3772 TCGA-67-3773 
       39.52         7.33         0.99         1.97         0.59         2.04 
TCGA-67-3774 TCGA-67-6215 TCGA-67-6216 TCGA-67-6217 TCGA-71-6725 TCGA-73-4658 
        0.59         0.89         0.69        13.87         2.01        52.57 
TCGA-73-4659 TCGA-73-4662 TCGA-73-4666 TCGA-73-4668 TCGA-73-4670 TCGA-73-4675 
       23.38        29.95        20.28        15.35         0.46         1.32 
TCGA-73-4676 TCGA-73-4677 TCGA-91-6828 TCGA-91-6829 TCGA-91-6835 TCGA-91-6836 
        4.01         1.25         1.22        41.33         1.15         0.36 

  TRIM48 MUTATED TRIM48 WILD-TYPE 
            1.28             0.07 
  TRIM48 MUTATED TRIM48 WILD-TYPE 
           28.37            85.32 
  TRIM48 MUTATED TRIM48 WILD-TYPE 
            9.96            14.04 
[1] "1.3 - 28.4 (10.0)" "0.1 - 85.3 (14.0)"
      TCGA-05-4249       TCGA-05-4250       TCGA-05-4382       TCGA-05-4384 
"TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" 
      TCGA-05-4390       TCGA-05-4396       TCGA-05-4397       TCGA-05-4398 
"TRIM48 WILD-TYPE"   "TRIM48 MUTATED" "TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" 
      TCGA-05-4402       TCGA-05-4405       TCGA-05-4415       TCGA-05-4417 
"TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" 
      TCGA-05-4418       TCGA-05-4420       TCGA-05-4424       TCGA-05-4426 
"TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" 
      TCGA-05-4427       TCGA-05-4430       TCGA-05-4432       TCGA-05-4433 
"TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" 
      TCGA-05-4434       TCGA-05-5420       TCGA-05-5423       TCGA-05-5425 
"TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" 
      TCGA-05-5429       TCGA-05-5715       TCGA-35-3615       TCGA-35-4122 
"TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" 
      TCGA-35-4123       TCGA-35-5375       TCGA-38-4625       TCGA-38-4626 
"TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" 
      TCGA-38-4627       TCGA-38-4628       TCGA-38-4629       TCGA-38-4630 
"TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE"   "TRIM48 MUTATED" "TRIM48 WILD-TYPE" 
      TCGA-38-4631       TCGA-38-4632       TCGA-38-6178       TCGA-44-2655 
"TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" 
      TCGA-44-2656       TCGA-44-2657       TCGA-44-2659       TCGA-44-2661 
"TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" 
      TCGA-44-2662       TCGA-44-2665       TCGA-44-2666       TCGA-44-2668 
"TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" 
      TCGA-44-3396       TCGA-44-3398       TCGA-44-3918       TCGA-44-3919 
"TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" 
      TCGA-44-4112       TCGA-44-5643       TCGA-44-5645       TCGA-44-6144 
"TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" 
      TCGA-44-6145       TCGA-44-6146       TCGA-44-6147       TCGA-44-6148 
"TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" 
      TCGA-44-6774       TCGA-44-6775       TCGA-44-6776       TCGA-44-6777 
"TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" 
      TCGA-44-6778       TCGA-44-6779       TCGA-49-4486       TCGA-49-4487 
"TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" 
      TCGA-49-4488       TCGA-49-4490       TCGA-49-4494       TCGA-49-4501 
"TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" 
      TCGA-49-4505       TCGA-49-4506       TCGA-49-4507       TCGA-49-4510 
"TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" 
      TCGA-49-4512       TCGA-49-4514       TCGA-49-6742       TCGA-49-6743 
"TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" 
      TCGA-49-6744       TCGA-49-6745       TCGA-50-5044       TCGA-50-5045 
"TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" 
      TCGA-50-5049       TCGA-50-5051       TCGA-50-5055       TCGA-50-5066 
"TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" 
      TCGA-50-5068       TCGA-50-5072       TCGA-50-5930       TCGA-50-5931 
"TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" 
      TCGA-50-5932       TCGA-50-5933       TCGA-50-5935       TCGA-50-5936 
"TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" 
      TCGA-50-5939       TCGA-50-5941       TCGA-50-5942       TCGA-50-5944 
"TRIM48 WILD-TYPE"   "TRIM48 MUTATED" "TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" 
      TCGA-50-5946       TCGA-50-6590       TCGA-50-6591       TCGA-50-6592 
"TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" 
      TCGA-50-6593       TCGA-50-6594       TCGA-50-6595       TCGA-50-6597 
"TRIM48 WILD-TYPE"   "TRIM48 MUTATED" "TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" 
      TCGA-55-1592       TCGA-55-1594       TCGA-55-1595       TCGA-55-1596 
"TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" 
      TCGA-55-5899       TCGA-55-6543       TCGA-55-6642       TCGA-55-6712 
"TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" 
      TCGA-64-1676       TCGA-64-1677       TCGA-64-1678       TCGA-64-1680 
"TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" 
      TCGA-64-5774       TCGA-64-5775       TCGA-64-5778       TCGA-64-5779 
"TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" 
      TCGA-64-5781       TCGA-64-5815       TCGA-67-3770       TCGA-67-3771 
"TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" 
      TCGA-67-3772       TCGA-67-3773       TCGA-67-3774       TCGA-67-6215 
"TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" 
      TCGA-67-6216       TCGA-67-6217       TCGA-71-6725       TCGA-73-4658 
"TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" 
      TCGA-73-4659       TCGA-73-4662       TCGA-73-4666       TCGA-73-4668 
"TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" 
      TCGA-73-4670       TCGA-73-4675       TCGA-73-4676       TCGA-73-4677 
"TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" 
      TCGA-91-6828       TCGA-91-6829       TCGA-91-6831       TCGA-91-6835 
"TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE"   "TRIM48 MUTATED" "TRIM48 WILD-TYPE" 
      TCGA-91-6836 
"TRIM48 WILD-TYPE" 
      TCGA-05-4249       TCGA-05-4250       TCGA-05-4382       TCGA-05-4384 
"TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" 
      TCGA-05-4390       TCGA-05-4396       TCGA-05-4397       TCGA-05-4398 
"TRIM48 WILD-TYPE"   "TRIM48 MUTATED" "TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" 
      TCGA-05-4402       TCGA-05-4405       TCGA-05-4415       TCGA-05-4417 
"TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" 
      TCGA-05-4418       TCGA-05-4420       TCGA-05-4424       TCGA-05-4426 
"TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" 
      TCGA-05-4427       TCGA-05-4430       TCGA-05-4432       TCGA-05-4433 
"TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" 
      TCGA-05-4434       TCGA-05-5420       TCGA-05-5423       TCGA-05-5425 
"TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" 
      TCGA-05-5429       TCGA-05-5715       TCGA-35-3615       TCGA-35-4122 
"TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" 
      TCGA-35-4123       TCGA-35-5375       TCGA-38-4625       TCGA-38-4626 
"TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" 
      TCGA-38-4627       TCGA-38-4628       TCGA-38-4629       TCGA-38-4630 
"TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE"   "TRIM48 MUTATED" "TRIM48 WILD-TYPE" 
      TCGA-38-4631       TCGA-38-4632       TCGA-38-6178       TCGA-44-2655 
"TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" 
      TCGA-44-2656       TCGA-44-2657       TCGA-44-2659       TCGA-44-2661 
"TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" 
      TCGA-44-2662       TCGA-44-2665       TCGA-44-2666       TCGA-44-2668 
"TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" 
      TCGA-44-3396       TCGA-44-3398       TCGA-44-3918       TCGA-44-3919 
"TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" 
      TCGA-44-4112       TCGA-44-5643       TCGA-44-5645       TCGA-44-6144 
"TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" 
      TCGA-44-6145       TCGA-44-6146       TCGA-44-6147       TCGA-44-6148 
"TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" 
      TCGA-44-6774       TCGA-44-6775       TCGA-44-6776       TCGA-44-6777 
"TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" 
      TCGA-44-6778       TCGA-44-6779       TCGA-49-4486       TCGA-49-4487 
"TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" 
      TCGA-49-4488       TCGA-49-4490       TCGA-49-4494       TCGA-49-4501 
"TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" 
      TCGA-49-4505       TCGA-49-4506       TCGA-49-4507       TCGA-49-4510 
"TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" 
      TCGA-49-4512       TCGA-49-4514       TCGA-49-6742       TCGA-49-6743 
"TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" 
      TCGA-49-6744       TCGA-49-6745       TCGA-50-5044       TCGA-50-5045 
"TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" 
      TCGA-50-5049       TCGA-50-5051       TCGA-50-5055       TCGA-50-5066 
"TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" 
      TCGA-50-5068       TCGA-50-5072       TCGA-50-5930       TCGA-50-5931 
"TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" 
      TCGA-50-5932       TCGA-50-5933       TCGA-50-5935       TCGA-50-5936 
"TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" 
      TCGA-50-5939       TCGA-50-5941       TCGA-50-5942       TCGA-50-5944 
"TRIM48 WILD-TYPE"   "TRIM48 MUTATED" "TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" 
      TCGA-50-5946       TCGA-50-6590       TCGA-50-6591       TCGA-50-6592 
"TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" 
      TCGA-50-6593       TCGA-50-6594       TCGA-50-6595       TCGA-50-6597 
"TRIM48 WILD-TYPE"   "TRIM48 MUTATED" "TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" 
      TCGA-55-1592       TCGA-55-1594       TCGA-55-1595       TCGA-55-1596 
"TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" 
      TCGA-55-5899       TCGA-55-6543       TCGA-55-6642       TCGA-55-6712 
"TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" 
      TCGA-64-1676       TCGA-64-1677       TCGA-64-1678       TCGA-64-1680 
"TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" 
      TCGA-64-5774       TCGA-64-5775       TCGA-64-5778       TCGA-64-5779 
"TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" 
      TCGA-64-5781       TCGA-64-5815       TCGA-67-3770       TCGA-67-3771 
"TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" 
      TCGA-67-3772       TCGA-67-3773       TCGA-67-3774       TCGA-67-6215 
"TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" 
      TCGA-67-6216       TCGA-67-6217       TCGA-71-6725       TCGA-73-4658 
"TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" 
      TCGA-73-4659       TCGA-73-4662       TCGA-73-4666       TCGA-73-4668 
"TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" 
      TCGA-73-4670       TCGA-73-4675       TCGA-73-4676       TCGA-73-4677 
"TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" 
      TCGA-91-6828       TCGA-91-6829       TCGA-91-6831       TCGA-91-6835 
"TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE"   "TRIM48 MUTATED" "TRIM48 WILD-TYPE" 
      TCGA-91-6836 
"TRIM48 WILD-TYPE" 
      TCGA-05-4249       TCGA-05-4250       TCGA-05-4382       TCGA-05-4384 
"TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" 
      TCGA-05-4390       TCGA-05-4396       TCGA-05-4397       TCGA-05-4398 
"TRIM48 WILD-TYPE"   "TRIM48 MUTATED" "TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" 
      TCGA-05-4402       TCGA-05-4405       TCGA-05-4415       TCGA-05-4417 
"TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" 
      TCGA-05-4418       TCGA-05-4420       TCGA-05-4424       TCGA-05-4426 
"TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" 
      TCGA-05-4427       TCGA-05-4430       TCGA-05-4432       TCGA-05-4433 
"TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" 
      TCGA-05-4434       TCGA-05-5420       TCGA-05-5423       TCGA-05-5425 
"TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" 
      TCGA-05-5429       TCGA-05-5715       TCGA-35-3615       TCGA-35-4122 
"TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" 
      TCGA-35-4123       TCGA-35-5375       TCGA-38-4625       TCGA-38-4626 
"TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" 
      TCGA-38-4627       TCGA-38-4628       TCGA-38-4629       TCGA-38-4630 
"TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE"   "TRIM48 MUTATED" "TRIM48 WILD-TYPE" 
      TCGA-38-4631       TCGA-38-4632       TCGA-38-6178       TCGA-44-2655 
"TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" 
      TCGA-44-2656       TCGA-44-2657       TCGA-44-2659       TCGA-44-2661 
"TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" 
      TCGA-44-2662       TCGA-44-2665       TCGA-44-2666       TCGA-44-2668 
"TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" 
      TCGA-44-3396       TCGA-44-3398       TCGA-44-3918       TCGA-44-3919 
"TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" 
      TCGA-44-4112       TCGA-44-5643       TCGA-44-5645       TCGA-44-6144 
"TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" 
      TCGA-44-6145       TCGA-44-6146       TCGA-44-6147       TCGA-44-6148 
"TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" 
      TCGA-44-6774       TCGA-44-6775       TCGA-44-6776       TCGA-44-6777 
"TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" 
      TCGA-44-6778       TCGA-44-6779       TCGA-49-4486       TCGA-49-4487 
"TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" 
      TCGA-49-4488       TCGA-49-4490       TCGA-49-4494       TCGA-49-4501 
"TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" 
      TCGA-49-4505       TCGA-49-4506       TCGA-49-4507       TCGA-49-4510 
"TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" 
      TCGA-49-4512       TCGA-49-4514       TCGA-49-6742       TCGA-49-6743 
"TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" 
      TCGA-49-6744       TCGA-49-6745       TCGA-50-5044       TCGA-50-5045 
"TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" 
      TCGA-50-5049       TCGA-50-5051       TCGA-50-5055       TCGA-50-5066 
"TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" 
      TCGA-50-5068       TCGA-50-5072       TCGA-50-5930       TCGA-50-5931 
"TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" 
      TCGA-50-5932       TCGA-50-5933       TCGA-50-5935       TCGA-50-5936 
"TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" 
      TCGA-50-5939       TCGA-50-5941       TCGA-50-5942       TCGA-50-5944 
"TRIM48 WILD-TYPE"   "TRIM48 MUTATED" "TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" 
      TCGA-50-5946       TCGA-50-6590       TCGA-50-6591       TCGA-50-6592 
"TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" 
      TCGA-50-6593       TCGA-50-6594       TCGA-50-6595       TCGA-50-6597 
"TRIM48 WILD-TYPE"   "TRIM48 MUTATED" "TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" 
      TCGA-55-1592       TCGA-55-1594       TCGA-55-1595       TCGA-55-1596 
"TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" 
      TCGA-55-5899       TCGA-55-6543       TCGA-55-6642       TCGA-55-6712 
"TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" 
      TCGA-64-1676       TCGA-64-1677       TCGA-64-1678       TCGA-64-1680 
"TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" 
      TCGA-64-5774       TCGA-64-5775       TCGA-64-5778       TCGA-64-5779 
"TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" 
      TCGA-64-5781       TCGA-64-5815       TCGA-67-3770       TCGA-67-3771 
"TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" 
      TCGA-67-3772       TCGA-67-3773       TCGA-67-3774       TCGA-67-6215 
"TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" 
      TCGA-67-6216       TCGA-67-6217       TCGA-71-6725       TCGA-73-4658 
"TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" 
      TCGA-73-4659       TCGA-73-4662       TCGA-73-4666       TCGA-73-4668 
"TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" 
      TCGA-73-4670       TCGA-73-4675       TCGA-73-4676       TCGA-73-4677 
"TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" 
      TCGA-91-6828       TCGA-91-6829       TCGA-91-6831       TCGA-91-6835 
"TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE"   "TRIM48 MUTATED" "TRIM48 WILD-TYPE" 
      TCGA-91-6836 
"TRIM48 WILD-TYPE" 
[1] "hr=" "3.8"
D258V2, continuous
D258V3, binary
[1] "tbl2"
                  cls
clus               [,1] [,2]
  TRIM48 MUTATED      2    3
  TRIM48 WILD-TYPE   91   76
        clus
vv       TRIM48 MUTATED TRIM48 WILD-TYPE
  FEMALE              2               91
  MALE                3               76
D258V4, continuous
D258V5, multiclass
D258V6, multiclass
    clus
vv   TRIM48 MUTATED TRIM48 WILD-TYPE
  T1              0               41
  T2              2              106
  T3              2               12
  T4              1                7
D258V7, multiclass
       clus
vv      TRIM48 MUTATED TRIM48 WILD-TYPE
  N0                 2               93
  N1                 1               36
  N2+N3              2               33
D258V8, multiclass
    clus
vv   TRIM48 MUTATED TRIM48 WILD-TYPE
  M0              4              133
  M1              0                9
  MX              1               21
D258V9, multiclass
     clus
vv    TRIM48 MUTATED TRIM48 WILD-TYPE
  I                1               87
  II               1               32
  III              3               36
  IV               0                9
D258V10, binary
[1] "tbl2"
                  cls
clus               [,1] [,2]
  TRIM48 MUTATED      0    5
  TRIM48 WILD-TYPE   16  151
     clus
vv    TRIM48 MUTATED TRIM48 WILD-TYPE
  NO               0               16
  YES              5              151
D258V11, continuous
D258V12, continuous
D258V13, multiclass
                                             clus
vv                                            TRIM48 MUTATED TRIM48 WILD-TYPE
  CURRENT REFORMED SMOKER FOR < OR = 15 YEARS              2               60
  CURRENT REFORMED SMOKER FOR > 15 YEARS                   1               45
  CURRENT SMOKER                                           2               26
  LIFELONG NON-SMOKER                                      0               24
D258V14, continuous
[1] "Remove cluster labels:" "TRIM48 MUTATED"        
clus
  TRIM48 MUTATED TRIM48 WILD-TYPE 
               1               67 
      TCGA-05-4384       TCGA-05-4390       TCGA-05-4405       TCGA-05-4410 
"TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" 
      TCGA-05-4415       TCGA-05-4417       TCGA-05-4424       TCGA-05-4427 
"TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" 
      TCGA-05-4433       TCGA-05-5420       TCGA-05-5423       TCGA-05-5425 
"TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" 
      TCGA-05-5428       TCGA-35-4122       TCGA-35-4123       TCGA-35-5375 
"TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" 
      TCGA-38-4625       TCGA-38-4626       TCGA-44-2655       TCGA-44-2656 
"TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" 
      TCGA-44-2657       TCGA-44-2659       TCGA-44-2662       TCGA-44-2666 
"TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" 
      TCGA-44-2668       TCGA-44-3396       TCGA-44-3398       TCGA-44-3918 
"TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" 
      TCGA-44-4112       TCGA-44-5645       TCGA-44-6144       TCGA-44-6145 
"TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" 
      TCGA-44-6147       TCGA-44-6148       TCGA-44-6774       TCGA-44-6775 
"TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" 
      TCGA-44-6776       TCGA-44-6777       TCGA-44-6778       TCGA-44-6779 
"TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" 
      TCGA-49-4486       TCGA-49-4494       TCGA-49-4505       TCGA-55-1592 
"TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" 
      TCGA-55-1594       TCGA-55-1595       TCGA-55-1596       TCGA-55-5899 
"TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" 
      TCGA-55-6642       TCGA-55-6712       TCGA-64-1677       TCGA-64-1678 
"TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" 
      TCGA-64-1680       TCGA-64-5774       TCGA-64-5775       TCGA-64-5778 
"TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" 
      TCGA-64-5779       TCGA-64-5781       TCGA-73-4659       TCGA-73-4662 
"TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" 
      TCGA-73-4666       TCGA-73-4668       TCGA-73-4670       TCGA-73-4675 
"TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" 
      TCGA-73-4676       TCGA-91-6829       TCGA-91-6836 
"TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" 

Clustering(259) Variable = DCDC1 MUTATION ANALYSIS
D259V1, survival
                 sevent
clus2              0  1
  DCDC1 MUTATED    5  4
  DCDC1 WILD-TYPE 94 46
  DCDC1 MUTATED DCDC1 WILD-TYPE 
              9             140 
  DCDC1 MUTATED DCDC1 WILD-TYPE 
              4              46 
$`DCDC1 MUTATED`
TCGA-05-4382 TCGA-05-4427 TCGA-44-6778 TCGA-49-4487 TCGA-49-4488 TCGA-49-4512 
       19.92        26.01        36.49        28.11        28.57        29.75 
TCGA-55-1592 TCGA-91-6828 TCGA-91-6831 
       23.05         1.22         1.28 

$`DCDC1 WILD-TYPE`
TCGA-05-4249 TCGA-05-4250 TCGA-05-4384 TCGA-05-4390 TCGA-05-4396 TCGA-05-4397 
       38.07         3.98        14.01        37.02         9.96        24.03 
TCGA-05-4398 TCGA-05-4402 TCGA-05-4405 TCGA-05-4415 TCGA-05-4417 TCGA-05-4418 
       47.05         8.02        20.05         2.96        14.93         8.98 
TCGA-05-4420 TCGA-05-4424 TCGA-05-4426 TCGA-05-4430 TCGA-05-4432 TCGA-05-4433 
       29.95        30.02        26.01        25.02        25.02        24.00 
TCGA-05-4434 TCGA-05-5420 TCGA-05-5423 TCGA-05-5425 TCGA-05-5429 TCGA-05-5715 
       15.02         1.02         4.96         2.96         0.99         2.04 
TCGA-35-3615 TCGA-35-4122 TCGA-35-4123 TCGA-35-5375 TCGA-38-4625 TCGA-38-4626 
        0.46         7.36         5.95         8.68        47.61        85.32 
TCGA-38-4627 TCGA-38-4628 TCGA-38-4629 TCGA-38-4630 TCGA-38-4631 TCGA-38-4632 
       37.71        49.02        28.37        35.28        11.64        44.61 
TCGA-38-6178 TCGA-44-2655 TCGA-44-2656 TCGA-44-2657 TCGA-44-2659 TCGA-44-2661 
        5.19        18.87        19.10        13.15        17.39         3.39 
TCGA-44-2662 TCGA-44-2665 TCGA-44-2666 TCGA-44-2668 TCGA-44-3396 TCGA-44-3398 
       15.78        13.15         3.19         8.09        10.22         8.32 
TCGA-44-3918 TCGA-44-3919 TCGA-44-4112 TCGA-44-5643 TCGA-44-5645 TCGA-44-6144 
        6.44         6.21         4.60         3.48         6.84         0.30 
TCGA-44-6145 TCGA-44-6146 TCGA-44-6147 TCGA-44-6148 TCGA-44-6774 TCGA-44-6775 
        3.35         9.93         7.76         3.12         5.42         2.70 
TCGA-44-6776 TCGA-44-6777 TCGA-44-6779 TCGA-49-4486 TCGA-49-4490 TCGA-49-4494 
       63.72        32.45        16.41        76.21        12.66        35.54 
TCGA-49-4501 TCGA-49-4505 TCGA-49-4506 TCGA-49-4507 TCGA-49-4510 TCGA-49-4514 
       46.72        14.07        32.84         8.81        29.46        43.20 
TCGA-49-6742 TCGA-49-6743 TCGA-49-6744 TCGA-49-6745 TCGA-50-5044 TCGA-50-5045 
       15.02        12.13        12.99         4.93        20.48        71.47 
TCGA-50-5049 TCGA-50-5051 TCGA-50-5055 TCGA-50-5066 TCGA-50-5068 TCGA-50-5072 
       48.82        14.96        25.81         9.76        49.28         8.05 
TCGA-50-5930 TCGA-50-5931 TCGA-50-5932 TCGA-50-5933 TCGA-50-5935 TCGA-50-5936 
        9.27         8.78        35.87        77.88        21.47         8.45 
TCGA-50-5939 TCGA-50-5941 TCGA-50-5942 TCGA-50-5944 TCGA-50-5946 TCGA-50-6590 
       15.12         9.37         4.44        12.26        11.47        42.31 
TCGA-50-6591 TCGA-50-6592 TCGA-50-6593 TCGA-50-6594 TCGA-50-6595 TCGA-50-6597 
        3.88        25.51        11.05        12.16         6.21        33.37 
TCGA-55-1594 TCGA-55-1595 TCGA-55-1596 TCGA-55-5899 TCGA-55-6543 TCGA-55-6642 
       38.73        48.62        45.17         2.86         0.07        32.61 
TCGA-55-6712 TCGA-64-1676 TCGA-64-1677 TCGA-64-1678 TCGA-64-1680 TCGA-64-5774 
        0.79        56.81        20.65        39.09        37.02        83.84 
TCGA-64-5775 TCGA-64-5778 TCGA-64-5779 TCGA-64-5781 TCGA-64-5815 TCGA-67-3770 
        0.10        30.44        16.67        39.52         7.33         0.99 
TCGA-67-3771 TCGA-67-3772 TCGA-67-3773 TCGA-67-3774 TCGA-67-6215 TCGA-67-6216 
        1.97         0.59         2.04         0.59         0.89         0.69 
TCGA-67-6217 TCGA-71-6725 TCGA-73-4658 TCGA-73-4659 TCGA-73-4662 TCGA-73-4666 
       13.87         2.01        52.57        23.38        29.95        20.28 
TCGA-73-4668 TCGA-73-4670 TCGA-73-4675 TCGA-73-4676 TCGA-73-4677 TCGA-91-6829 
       15.35         0.46         1.32         4.01         1.25        41.33 
TCGA-91-6835 TCGA-91-6836 
        1.15         0.36 

  DCDC1 MUTATED DCDC1 WILD-TYPE 
           1.22            0.07 
  DCDC1 MUTATED DCDC1 WILD-TYPE 
          36.49           85.32 
  DCDC1 MUTATED DCDC1 WILD-TYPE 
          26.01           13.07 
[1] "1.2 - 36.5 (26.0)" "0.1 - 85.3 (13.1)"
     TCGA-05-4249      TCGA-05-4250      TCGA-05-4382      TCGA-05-4384 
"DCDC1 WILD-TYPE" "DCDC1 WILD-TYPE"   "DCDC1 MUTATED" "DCDC1 WILD-TYPE" 
     TCGA-05-4390      TCGA-05-4396      TCGA-05-4397      TCGA-05-4398 
"DCDC1 WILD-TYPE" "DCDC1 WILD-TYPE" "DCDC1 WILD-TYPE" "DCDC1 WILD-TYPE" 
     TCGA-05-4402      TCGA-05-4405      TCGA-05-4415      TCGA-05-4417 
"DCDC1 WILD-TYPE" "DCDC1 WILD-TYPE" "DCDC1 WILD-TYPE" "DCDC1 WILD-TYPE" 
     TCGA-05-4418      TCGA-05-4420      TCGA-05-4424      TCGA-05-4426 
"DCDC1 WILD-TYPE" "DCDC1 WILD-TYPE" "DCDC1 WILD-TYPE" "DCDC1 WILD-TYPE" 
     TCGA-05-4427      TCGA-05-4430      TCGA-05-4432      TCGA-05-4433 
  "DCDC1 MUTATED" "DCDC1 WILD-TYPE" "DCDC1 WILD-TYPE" "DCDC1 WILD-TYPE" 
     TCGA-05-4434      TCGA-05-5420      TCGA-05-5423      TCGA-05-5425 
"DCDC1 WILD-TYPE" "DCDC1 WILD-TYPE" "DCDC1 WILD-TYPE" "DCDC1 WILD-TYPE" 
     TCGA-05-5429      TCGA-05-5715      TCGA-35-3615      TCGA-35-4122 
"DCDC1 WILD-TYPE" "DCDC1 WILD-TYPE" "DCDC1 WILD-TYPE" "DCDC1 WILD-TYPE" 
     TCGA-35-4123      TCGA-35-5375      TCGA-38-4625      TCGA-38-4626 
"DCDC1 WILD-TYPE" "DCDC1 WILD-TYPE" "DCDC1 WILD-TYPE" "DCDC1 WILD-TYPE" 
     TCGA-38-4627      TCGA-38-4628      TCGA-38-4629      TCGA-38-4630 
"DCDC1 WILD-TYPE" "DCDC1 WILD-TYPE" "DCDC1 WILD-TYPE" "DCDC1 WILD-TYPE" 
     TCGA-38-4631      TCGA-38-4632      TCGA-38-6178      TCGA-44-2655 
"DCDC1 WILD-TYPE" "DCDC1 WILD-TYPE" "DCDC1 WILD-TYPE" "DCDC1 WILD-TYPE" 
     TCGA-44-2656      TCGA-44-2657      TCGA-44-2659      TCGA-44-2661 
"DCDC1 WILD-TYPE" "DCDC1 WILD-TYPE" "DCDC1 WILD-TYPE" "DCDC1 WILD-TYPE" 
     TCGA-44-2662      TCGA-44-2665      TCGA-44-2666      TCGA-44-2668 
"DCDC1 WILD-TYPE" "DCDC1 WILD-TYPE" "DCDC1 WILD-TYPE" "DCDC1 WILD-TYPE" 
     TCGA-44-3396      TCGA-44-3398      TCGA-44-3918      TCGA-44-3919 
"DCDC1 WILD-TYPE" "DCDC1 WILD-TYPE" "DCDC1 WILD-TYPE" "DCDC1 WILD-TYPE" 
     TCGA-44-4112      TCGA-44-5643      TCGA-44-5645      TCGA-44-6144 
"DCDC1 WILD-TYPE" "DCDC1 WILD-TYPE" "DCDC1 WILD-TYPE" "DCDC1 WILD-TYPE" 
     TCGA-44-6145      TCGA-44-6146      TCGA-44-6147      TCGA-44-6148 
"DCDC1 WILD-TYPE" "DCDC1 WILD-TYPE" "DCDC1 WILD-TYPE" "DCDC1 WILD-TYPE" 
     TCGA-44-6774      TCGA-44-6775      TCGA-44-6776      TCGA-44-6777 
"DCDC1 WILD-TYPE" "DCDC1 WILD-TYPE" "DCDC1 WILD-TYPE" "DCDC1 WILD-TYPE" 
     TCGA-44-6778      TCGA-44-6779      TCGA-49-4486      TCGA-49-4487 
  "DCDC1 MUTATED" "DCDC1 WILD-TYPE" "DCDC1 WILD-TYPE"   "DCDC1 MUTATED" 
     TCGA-49-4488      TCGA-49-4490      TCGA-49-4494      TCGA-49-4501 
  "DCDC1 MUTATED" "DCDC1 WILD-TYPE" "DCDC1 WILD-TYPE" "DCDC1 WILD-TYPE" 
     TCGA-49-4505      TCGA-49-4506      TCGA-49-4507      TCGA-49-4510 
"DCDC1 WILD-TYPE" "DCDC1 WILD-TYPE" "DCDC1 WILD-TYPE" "DCDC1 WILD-TYPE" 
     TCGA-49-4512      TCGA-49-4514      TCGA-49-6742      TCGA-49-6743 
  "DCDC1 MUTATED" "DCDC1 WILD-TYPE" "DCDC1 WILD-TYPE" "DCDC1 WILD-TYPE" 
     TCGA-49-6744      TCGA-49-6745      TCGA-50-5044      TCGA-50-5045 
"DCDC1 WILD-TYPE" "DCDC1 WILD-TYPE" "DCDC1 WILD-TYPE" "DCDC1 WILD-TYPE" 
     TCGA-50-5049      TCGA-50-5051      TCGA-50-5055      TCGA-50-5066 
"DCDC1 WILD-TYPE" "DCDC1 WILD-TYPE" "DCDC1 WILD-TYPE" "DCDC1 WILD-TYPE" 
     TCGA-50-5068      TCGA-50-5072      TCGA-50-5930      TCGA-50-5931 
"DCDC1 WILD-TYPE" "DCDC1 WILD-TYPE" "DCDC1 WILD-TYPE" "DCDC1 WILD-TYPE" 
     TCGA-50-5932      TCGA-50-5933      TCGA-50-5935      TCGA-50-5936 
"DCDC1 WILD-TYPE" "DCDC1 WILD-TYPE" "DCDC1 WILD-TYPE" "DCDC1 WILD-TYPE" 
     TCGA-50-5939      TCGA-50-5941      TCGA-50-5942      TCGA-50-5944 
"DCDC1 WILD-TYPE" "DCDC1 WILD-TYPE" "DCDC1 WILD-TYPE" "DCDC1 WILD-TYPE" 
     TCGA-50-5946      TCGA-50-6590      TCGA-50-6591      TCGA-50-6592 
"DCDC1 WILD-TYPE" "DCDC1 WILD-TYPE" "DCDC1 WILD-TYPE" "DCDC1 WILD-TYPE" 
     TCGA-50-6593      TCGA-50-6594      TCGA-50-6595      TCGA-50-6597 
"DCDC1 WILD-TYPE" "DCDC1 WILD-TYPE" "DCDC1 WILD-TYPE" "DCDC1 WILD-TYPE" 
     TCGA-55-1592      TCGA-55-1594      TCGA-55-1595      TCGA-55-1596 
  "DCDC1 MUTATED" "DCDC1 WILD-TYPE" "DCDC1 WILD-TYPE" "DCDC1 WILD-TYPE" 
     TCGA-55-5899      TCGA-55-6543      TCGA-55-6642      TCGA-55-6712 
"DCDC1 WILD-TYPE" "DCDC1 WILD-TYPE" "DCDC1 WILD-TYPE" "DCDC1 WILD-TYPE" 
     TCGA-64-1676      TCGA-64-1677      TCGA-64-1678      TCGA-64-1680 
"DCDC1 WILD-TYPE" "DCDC1 WILD-TYPE" "DCDC1 WILD-TYPE" "DCDC1 WILD-TYPE" 
     TCGA-64-5774      TCGA-64-5775      TCGA-64-5778      TCGA-64-5779 
"DCDC1 WILD-TYPE" "DCDC1 WILD-TYPE" "DCDC1 WILD-TYPE" "DCDC1 WILD-TYPE" 
     TCGA-64-5781      TCGA-64-5815      TCGA-67-3770      TCGA-67-3771 
"DCDC1 WILD-TYPE" "DCDC1 WILD-TYPE" "DCDC1 WILD-TYPE" "DCDC1 WILD-TYPE" 
     TCGA-67-3772      TCGA-67-3773      TCGA-67-3774      TCGA-67-6215 
"DCDC1 WILD-TYPE" "DCDC1 WILD-TYPE" "DCDC1 WILD-TYPE" "DCDC1 WILD-TYPE" 
     TCGA-67-6216      TCGA-67-6217      TCGA-71-6725      TCGA-73-4658 
"DCDC1 WILD-TYPE" "DCDC1 WILD-TYPE" "DCDC1 WILD-TYPE" "DCDC1 WILD-TYPE" 
     TCGA-73-4659      TCGA-73-4662      TCGA-73-4666      TCGA-73-4668 
"DCDC1 WILD-TYPE" "DCDC1 WILD-TYPE" "DCDC1 WILD-TYPE" "DCDC1 WILD-TYPE" 
     TCGA-73-4670      TCGA-73-4675      TCGA-73-4676      TCGA-73-4677 
"DCDC1 WILD-TYPE" "DCDC1 WILD-TYPE" "DCDC1 WILD-TYPE" "DCDC1 WILD-TYPE" 
     TCGA-91-6828      TCGA-91-6829      TCGA-91-6831      TCGA-91-6835 
  "DCDC1 MUTATED" "DCDC1 WILD-TYPE"   "DCDC1 MUTATED" "DCDC1 WILD-TYPE" 
     TCGA-91-6836 
"DCDC1 WILD-TYPE" 
     TCGA-05-4249      TCGA-05-4250      TCGA-05-4382      TCGA-05-4384 
"DCDC1 WILD-TYPE" "DCDC1 WILD-TYPE"   "DCDC1 MUTATED" "DCDC1 WILD-TYPE" 
     TCGA-05-4390      TCGA-05-4396      TCGA-05-4397      TCGA-05-4398 
"DCDC1 WILD-TYPE" "DCDC1 WILD-TYPE" "DCDC1 WILD-TYPE" "DCDC1 WILD-TYPE" 
     TCGA-05-4402      TCGA-05-4405      TCGA-05-4415      TCGA-05-4417 
"DCDC1 WILD-TYPE" "DCDC1 WILD-TYPE" "DCDC1 WILD-TYPE" "DCDC1 WILD-TYPE" 
     TCGA-05-4418      TCGA-05-4420      TCGA-05-4424      TCGA-05-4426 
"DCDC1 WILD-TYPE" "DCDC1 WILD-TYPE" "DCDC1 WILD-TYPE" "DCDC1 WILD-TYPE" 
     TCGA-05-4427      TCGA-05-4430      TCGA-05-4432      TCGA-05-4433 
  "DCDC1 MUTATED" "DCDC1 WILD-TYPE" "DCDC1 WILD-TYPE" "DCDC1 WILD-TYPE" 
     TCGA-05-4434      TCGA-05-5420      TCGA-05-5423      TCGA-05-5425 
"DCDC1 WILD-TYPE" "DCDC1 WILD-TYPE" "DCDC1 WILD-TYPE" "DCDC1 WILD-TYPE" 
     TCGA-05-5429      TCGA-05-5715      TCGA-35-3615      TCGA-35-4122 
"DCDC1 WILD-TYPE" "DCDC1 WILD-TYPE" "DCDC1 WILD-TYPE" "DCDC1 WILD-TYPE" 
     TCGA-35-4123      TCGA-35-5375      TCGA-38-4625      TCGA-38-4626 
"DCDC1 WILD-TYPE" "DCDC1 WILD-TYPE" "DCDC1 WILD-TYPE" "DCDC1 WILD-TYPE" 
     TCGA-38-4627      TCGA-38-4628      TCGA-38-4629      TCGA-38-4630 
"DCDC1 WILD-TYPE" "DCDC1 WILD-TYPE" "DCDC1 WILD-TYPE" "DCDC1 WILD-TYPE" 
     TCGA-38-4631      TCGA-38-4632      TCGA-38-6178      TCGA-44-2655 
"DCDC1 WILD-TYPE" "DCDC1 WILD-TYPE" "DCDC1 WILD-TYPE" "DCDC1 WILD-TYPE" 
     TCGA-44-2656      TCGA-44-2657      TCGA-44-2659      TCGA-44-2661 
"DCDC1 WILD-TYPE" "DCDC1 WILD-TYPE" "DCDC1 WILD-TYPE" "DCDC1 WILD-TYPE" 
     TCGA-44-2662      TCGA-44-2665      TCGA-44-2666      TCGA-44-2668 
"DCDC1 WILD-TYPE" "DCDC1 WILD-TYPE" "DCDC1 WILD-TYPE" "DCDC1 WILD-TYPE" 
     TCGA-44-3396      TCGA-44-3398      TCGA-44-3918      TCGA-44-3919 
"DCDC1 WILD-TYPE" "DCDC1 WILD-TYPE" "DCDC1 WILD-TYPE" "DCDC1 WILD-TYPE" 
     TCGA-44-4112      TCGA-44-5643      TCGA-44-5645      TCGA-44-6144 
"DCDC1 WILD-TYPE" "DCDC1 WILD-TYPE" "DCDC1 WILD-TYPE" "DCDC1 WILD-TYPE" 
     TCGA-44-6145      TCGA-44-6146      TCGA-44-6147      TCGA-44-6148 
"DCDC1 WILD-TYPE" "DCDC1 WILD-TYPE" "DCDC1 WILD-TYPE" "DCDC1 WILD-TYPE" 
     TCGA-44-6774      TCGA-44-6775      TCGA-44-6776      TCGA-44-6777 
"DCDC1 WILD-TYPE" "DCDC1 WILD-TYPE" "DCDC1 WILD-TYPE" "DCDC1 WILD-TYPE" 
     TCGA-44-6778      TCGA-44-6779      TCGA-49-4486      TCGA-49-4487 
  "DCDC1 MUTATED" "DCDC1 WILD-TYPE" "DCDC1 WILD-TYPE"   "DCDC1 MUTATED" 
     TCGA-49-4488      TCGA-49-4490      TCGA-49-4494      TCGA-49-4501 
  "DCDC1 MUTATED" "DCDC1 WILD-TYPE" "DCDC1 WILD-TYPE" "DCDC1 WILD-TYPE" 
     TCGA-49-4505      TCGA-49-4506      TCGA-49-4507      TCGA-49-4510 
"DCDC1 WILD-TYPE" "DCDC1 WILD-TYPE" "DCDC1 WILD-TYPE" "DCDC1 WILD-TYPE" 
     TCGA-49-4512      TCGA-49-4514      TCGA-49-6742      TCGA-49-6743 
  "DCDC1 MUTATED" "DCDC1 WILD-TYPE" "DCDC1 WILD-TYPE" "DCDC1 WILD-TYPE" 
     TCGA-49-6744      TCGA-49-6745      TCGA-50-5044      TCGA-50-5045 
"DCDC1 WILD-TYPE" "DCDC1 WILD-TYPE" "DCDC1 WILD-TYPE" "DCDC1 WILD-TYPE" 
     TCGA-50-5049      TCGA-50-5051      TCGA-50-5055      TCGA-50-5066 
"DCDC1 WILD-TYPE" "DCDC1 WILD-TYPE" "DCDC1 WILD-TYPE" "DCDC1 WILD-TYPE" 
     TCGA-50-5068      TCGA-50-5072      TCGA-50-5930      TCGA-50-5931 
"DCDC1 WILD-TYPE" "DCDC1 WILD-TYPE" "DCDC1 WILD-TYPE" "DCDC1 WILD-TYPE" 
     TCGA-50-5932      TCGA-50-5933      TCGA-50-5935      TCGA-50-5936 
"DCDC1 WILD-TYPE" "DCDC1 WILD-TYPE" "DCDC1 WILD-TYPE" "DCDC1 WILD-TYPE" 
     TCGA-50-5939      TCGA-50-5941      TCGA-50-5942      TCGA-50-5944 
"DCDC1 WILD-TYPE" "DCDC1 WILD-TYPE" "DCDC1 WILD-TYPE" "DCDC1 WILD-TYPE" 
     TCGA-50-5946      TCGA-50-6590      TCGA-50-6591      TCGA-50-6592 
"DCDC1 WILD-TYPE" "DCDC1 WILD-TYPE" "DCDC1 WILD-TYPE" "DCDC1 WILD-TYPE" 
     TCGA-50-6593      TCGA-50-6594      TCGA-50-6595      TCGA-50-6597 
"DCDC1 WILD-TYPE" "DCDC1 WILD-TYPE" "DCDC1 WILD-TYPE" "DCDC1 WILD-TYPE" 
     TCGA-55-1592      TCGA-55-1594      TCGA-55-1595      TCGA-55-1596 
  "DCDC1 MUTATED" "DCDC1 WILD-TYPE" "DCDC1 WILD-TYPE" "DCDC1 WILD-TYPE" 
     TCGA-55-5899      TCGA-55-6543      TCGA-55-6642      TCGA-55-6712 
"DCDC1 WILD-TYPE" "DCDC1 WILD-TYPE" "DCDC1 WILD-TYPE" "DCDC1 WILD-TYPE" 
     TCGA-64-1676      TCGA-64-1677      TCGA-64-1678      TCGA-64-1680 
"DCDC1 WILD-TYPE" "DCDC1 WILD-TYPE" "DCDC1 WILD-TYPE" "DCDC1 WILD-TYPE" 
     TCGA-64-5774      TCGA-64-5775      TCGA-64-5778      TCGA-64-5779 
"DCDC1 WILD-TYPE" "DCDC1 WILD-TYPE" "DCDC1 WILD-TYPE" "DCDC1 WILD-TYPE" 
     TCGA-64-5781      TCGA-64-5815      TCGA-67-3770      TCGA-67-3771 
"DCDC1 WILD-TYPE" "DCDC1 WILD-TYPE" "DCDC1 WILD-TYPE" "DCDC1 WILD-TYPE" 
     TCGA-67-3772      TCGA-67-3773      TCGA-67-3774      TCGA-67-6215 
"DCDC1 WILD-TYPE" "DCDC1 WILD-TYPE" "DCDC1 WILD-TYPE" "DCDC1 WILD-TYPE" 
     TCGA-67-6216      TCGA-67-6217      TCGA-71-6725      TCGA-73-4658 
"DCDC1 WILD-TYPE" "DCDC1 WILD-TYPE" "DCDC1 WILD-TYPE" "DCDC1 WILD-TYPE" 
     TCGA-73-4659      TCGA-73-4662      TCGA-73-4666      TCGA-73-4668 
"DCDC1 WILD-TYPE" "DCDC1 WILD-TYPE" "DCDC1 WILD-TYPE" "DCDC1 WILD-TYPE" 
     TCGA-73-4670      TCGA-73-4675      TCGA-73-4676      TCGA-73-4677 
"DCDC1 WILD-TYPE" "DCDC1 WILD-TYPE" "DCDC1 WILD-TYPE" "DCDC1 WILD-TYPE" 
     TCGA-91-6828      TCGA-91-6829      TCGA-91-6831      TCGA-91-6835 
  "DCDC1 MUTATED" "DCDC1 WILD-TYPE"   "DCDC1 MUTATED" "DCDC1 WILD-TYPE" 
     TCGA-91-6836 
"DCDC1 WILD-TYPE" 
     TCGA-05-4249      TCGA-05-4250      TCGA-05-4382      TCGA-05-4384 
"DCDC1 WILD-TYPE" "DCDC1 WILD-TYPE"   "DCDC1 MUTATED" "DCDC1 WILD-TYPE" 
     TCGA-05-4390      TCGA-05-4396      TCGA-05-4397      TCGA-05-4398 
"DCDC1 WILD-TYPE" "DCDC1 WILD-TYPE" "DCDC1 WILD-TYPE" "DCDC1 WILD-TYPE" 
     TCGA-05-4402      TCGA-05-4405      TCGA-05-4415      TCGA-05-4417 
"DCDC1 WILD-TYPE" "DCDC1 WILD-TYPE" "DCDC1 WILD-TYPE" "DCDC1 WILD-TYPE" 
     TCGA-05-4418      TCGA-05-4420      TCGA-05-4424      TCGA-05-4426 
"DCDC1 WILD-TYPE" "DCDC1 WILD-TYPE" "DCDC1 WILD-TYPE" "DCDC1 WILD-TYPE" 
     TCGA-05-4427      TCGA-05-4430      TCGA-05-4432      TCGA-05-4433 
  "DCDC1 MUTATED" "DCDC1 WILD-TYPE" "DCDC1 WILD-TYPE" "DCDC1 WILD-TYPE" 
     TCGA-05-4434      TCGA-05-5420      TCGA-05-5423      TCGA-05-5425 
"DCDC1 WILD-TYPE" "DCDC1 WILD-TYPE" "DCDC1 WILD-TYPE" "DCDC1 WILD-TYPE" 
     TCGA-05-5429      TCGA-05-5715      TCGA-35-3615      TCGA-35-4122 
"DCDC1 WILD-TYPE" "DCDC1 WILD-TYPE" "DCDC1 WILD-TYPE" "DCDC1 WILD-TYPE" 
     TCGA-35-4123      TCGA-35-5375      TCGA-38-4625      TCGA-38-4626 
"DCDC1 WILD-TYPE" "DCDC1 WILD-TYPE" "DCDC1 WILD-TYPE" "DCDC1 WILD-TYPE" 
     TCGA-38-4627      TCGA-38-4628      TCGA-38-4629      TCGA-38-4630 
"DCDC1 WILD-TYPE" "DCDC1 WILD-TYPE" "DCDC1 WILD-TYPE" "DCDC1 WILD-TYPE" 
     TCGA-38-4631      TCGA-38-4632      TCGA-38-6178      TCGA-44-2655 
"DCDC1 WILD-TYPE" "DCDC1 WILD-TYPE" "DCDC1 WILD-TYPE" "DCDC1 WILD-TYPE" 
     TCGA-44-2656      TCGA-44-2657      TCGA-44-2659      TCGA-44-2661 
"DCDC1 WILD-TYPE" "DCDC1 WILD-TYPE" "DCDC1 WILD-TYPE" "DCDC1 WILD-TYPE" 
     TCGA-44-2662      TCGA-44-2665      TCGA-44-2666      TCGA-44-2668 
"DCDC1 WILD-TYPE" "DCDC1 WILD-TYPE" "DCDC1 WILD-TYPE" "DCDC1 WILD-TYPE" 
     TCGA-44-3396      TCGA-44-3398      TCGA-44-3918      TCGA-44-3919 
"DCDC1 WILD-TYPE" "DCDC1 WILD-TYPE" "DCDC1 WILD-TYPE" "DCDC1 WILD-TYPE" 
     TCGA-44-4112      TCGA-44-5643      TCGA-44-5645      TCGA-44-6144 
"DCDC1 WILD-TYPE" "DCDC1 WILD-TYPE" "DCDC1 WILD-TYPE" "DCDC1 WILD-TYPE" 
     TCGA-44-6145      TCGA-44-6146      TCGA-44-6147      TCGA-44-6148 
"DCDC1 WILD-TYPE" "DCDC1 WILD-TYPE" "DCDC1 WILD-TYPE" "DCDC1 WILD-TYPE" 
     TCGA-44-6774      TCGA-44-6775      TCGA-44-6776      TCGA-44-6777 
"DCDC1 WILD-TYPE" "DCDC1 WILD-TYPE" "DCDC1 WILD-TYPE" "DCDC1 WILD-TYPE" 
     TCGA-44-6778      TCGA-44-6779      TCGA-49-4486      TCGA-49-4487 
  "DCDC1 MUTATED" "DCDC1 WILD-TYPE" "DCDC1 WILD-TYPE"   "DCDC1 MUTATED" 
     TCGA-49-4488      TCGA-49-4490      TCGA-49-4494      TCGA-49-4501 
  "DCDC1 MUTATED" "DCDC1 WILD-TYPE" "DCDC1 WILD-TYPE" "DCDC1 WILD-TYPE" 
     TCGA-49-4505      TCGA-49-4506      TCGA-49-4507      TCGA-49-4510 
"DCDC1 WILD-TYPE" "DCDC1 WILD-TYPE" "DCDC1 WILD-TYPE" "DCDC1 WILD-TYPE" 
     TCGA-49-4512      TCGA-49-4514      TCGA-49-6742      TCGA-49-6743 
  "DCDC1 MUTATED" "DCDC1 WILD-TYPE" "DCDC1 WILD-TYPE" "DCDC1 WILD-TYPE" 
     TCGA-49-6744      TCGA-49-6745      TCGA-50-5044      TCGA-50-5045 
"DCDC1 WILD-TYPE" "DCDC1 WILD-TYPE" "DCDC1 WILD-TYPE" "DCDC1 WILD-TYPE" 
     TCGA-50-5049      TCGA-50-5051      TCGA-50-5055      TCGA-50-5066 
"DCDC1 WILD-TYPE" "DCDC1 WILD-TYPE" "DCDC1 WILD-TYPE" "DCDC1 WILD-TYPE" 
     TCGA-50-5068      TCGA-50-5072      TCGA-50-5930      TCGA-50-5931 
"DCDC1 WILD-TYPE" "DCDC1 WILD-TYPE" "DCDC1 WILD-TYPE" "DCDC1 WILD-TYPE" 
     TCGA-50-5932      TCGA-50-5933      TCGA-50-5935      TCGA-50-5936 
"DCDC1 WILD-TYPE" "DCDC1 WILD-TYPE" "DCDC1 WILD-TYPE" "DCDC1 WILD-TYPE" 
     TCGA-50-5939      TCGA-50-5941      TCGA-50-5942      TCGA-50-5944 
"DCDC1 WILD-TYPE" "DCDC1 WILD-TYPE" "DCDC1 WILD-TYPE" "DCDC1 WILD-TYPE" 
     TCGA-50-5946      TCGA-50-6590      TCGA-50-6591      TCGA-50-6592 
"DCDC1 WILD-TYPE" "DCDC1 WILD-TYPE" "DCDC1 WILD-TYPE" "DCDC1 WILD-TYPE" 
     TCGA-50-6593      TCGA-50-6594      TCGA-50-6595      TCGA-50-6597 
"DCDC1 WILD-TYPE" "DCDC1 WILD-TYPE" "DCDC1 WILD-TYPE" "DCDC1 WILD-TYPE" 
     TCGA-55-1592      TCGA-55-1594      TCGA-55-1595      TCGA-55-1596 
  "DCDC1 MUTATED" "DCDC1 WILD-TYPE" "DCDC1 WILD-TYPE" "DCDC1 WILD-TYPE" 
     TCGA-55-5899      TCGA-55-6543      TCGA-55-6642      TCGA-55-6712 
"DCDC1 WILD-TYPE" "DCDC1 WILD-TYPE" "DCDC1 WILD-TYPE" "DCDC1 WILD-TYPE" 
     TCGA-64-1676      TCGA-64-1677      TCGA-64-1678      TCGA-64-1680 
"DCDC1 WILD-TYPE" "DCDC1 WILD-TYPE" "DCDC1 WILD-TYPE" "DCDC1 WILD-TYPE" 
     TCGA-64-5774      TCGA-64-5775      TCGA-64-5778      TCGA-64-5779 
"DCDC1 WILD-TYPE" "DCDC1 WILD-TYPE" "DCDC1 WILD-TYPE" "DCDC1 WILD-TYPE" 
     TCGA-64-5781      TCGA-64-5815      TCGA-67-3770      TCGA-67-3771 
"DCDC1 WILD-TYPE" "DCDC1 WILD-TYPE" "DCDC1 WILD-TYPE" "DCDC1 WILD-TYPE" 
     TCGA-67-3772      TCGA-67-3773      TCGA-67-3774      TCGA-67-6215 
"DCDC1 WILD-TYPE" "DCDC1 WILD-TYPE" "DCDC1 WILD-TYPE" "DCDC1 WILD-TYPE" 
     TCGA-67-6216      TCGA-67-6217      TCGA-71-6725      TCGA-73-4658 
"DCDC1 WILD-TYPE" "DCDC1 WILD-TYPE" "DCDC1 WILD-TYPE" "DCDC1 WILD-TYPE" 
     TCGA-73-4659      TCGA-73-4662      TCGA-73-4666      TCGA-73-4668 
"DCDC1 WILD-TYPE" "DCDC1 WILD-TYPE" "DCDC1 WILD-TYPE" "DCDC1 WILD-TYPE" 
     TCGA-73-4670      TCGA-73-4675      TCGA-73-4676      TCGA-73-4677 
"DCDC1 WILD-TYPE" "DCDC1 WILD-TYPE" "DCDC1 WILD-TYPE" "DCDC1 WILD-TYPE" 
     TCGA-91-6828      TCGA-91-6829      TCGA-91-6831      TCGA-91-6835 
  "DCDC1 MUTATED" "DCDC1 WILD-TYPE"   "DCDC1 MUTATED" "DCDC1 WILD-TYPE" 
     TCGA-91-6836 
"DCDC1 WILD-TYPE" 
[1] "hr=" "1.4"
D259V2, continuous
D259V3, binary
[1] "tbl2"
                 cls
clus              [,1] [,2]
  DCDC1 MUTATED      4    5
  DCDC1 WILD-TYPE   89   74
        clus
vv       DCDC1 MUTATED DCDC1 WILD-TYPE
  FEMALE             4              89
  MALE               5              74
D259V4, continuous
D259V5, multiclass
D259V6, multiclass
    clus
vv   DCDC1 MUTATED DCDC1 WILD-TYPE
  T1             4              37
  T2             5             103
  T3             0              14
  T4             0               8
D259V7, multiclass
       clus
vv      DCDC1 MUTATED DCDC1 WILD-TYPE
  N0                7              88
  N1                1              36
  N2+N3             1              34
D259V8, multiclass
    clus
vv   DCDC1 MUTATED DCDC1 WILD-TYPE
  M0             4             133
  M1             0               9
  MX             5              17
D259V9, multiclass
     clus
vv    DCDC1 MUTATED DCDC1 WILD-TYPE
  I               7              81
  II              1              32
  III             1              38
  IV              0               9
D259V10, binary
[1] "tbl2"
                 cls
clus              [,1] [,2]
  DCDC1 MUTATED      0    9
  DCDC1 WILD-TYPE   16  147
     clus
vv    DCDC1 MUTATED DCDC1 WILD-TYPE
  NO              0              16
  YES             9             147
D259V11, continuous
D259V12, continuous
D259V13, multiclass
                                             clus
vv                                            DCDC1 MUTATED DCDC1 WILD-TYPE
  CURRENT REFORMED SMOKER FOR < OR = 15 YEARS             5              57
  CURRENT REFORMED SMOKER FOR > 15 YEARS                  2              44
  CURRENT SMOKER                                          1              27
  LIFELONG NON-SMOKER                                     1              23
D259V14, continuous

Clustering(260) Variable = GPRC6A MUTATION ANALYSIS
D260V1, survival
                  sevent
clus2               0  1
  GPRC6A MUTATED    8  4
  GPRC6A WILD-TYPE 91 46
  GPRC6A MUTATED GPRC6A WILD-TYPE 
              12              137 
  GPRC6A MUTATED GPRC6A WILD-TYPE 
               4               46 
$`GPRC6A MUTATED`
TCGA-05-4396 TCGA-05-4398 TCGA-05-4417 TCGA-05-4418 TCGA-05-4432 TCGA-35-5375 
        9.96        47.05        14.93         8.98        25.02         8.68 
TCGA-44-3398 TCGA-44-6774 TCGA-49-4510 TCGA-49-6744 TCGA-50-6592 TCGA-73-4668 
        8.32         5.42        29.46        12.99        25.51        15.35 

$`GPRC6A WILD-TYPE`
TCGA-05-4249 TCGA-05-4250 TCGA-05-4382 TCGA-05-4384 TCGA-05-4390 TCGA-05-4397 
       38.07         3.98        19.92        14.01        37.02        24.03 
TCGA-05-4402 TCGA-05-4405 TCGA-05-4415 TCGA-05-4420 TCGA-05-4424 TCGA-05-4426 
        8.02        20.05         2.96        29.95        30.02        26.01 
TCGA-05-4427 TCGA-05-4430 TCGA-05-4433 TCGA-05-4434 TCGA-05-5420 TCGA-05-5423 
       26.01        25.02        24.00        15.02         1.02         4.96 
TCGA-05-5425 TCGA-05-5429 TCGA-05-5715 TCGA-35-3615 TCGA-35-4122 TCGA-35-4123 
        2.96         0.99         2.04         0.46         7.36         5.95 
TCGA-38-4625 TCGA-38-4626 TCGA-38-4627 TCGA-38-4628 TCGA-38-4629 TCGA-38-4630 
       47.61        85.32        37.71        49.02        28.37        35.28 
TCGA-38-4631 TCGA-38-4632 TCGA-38-6178 TCGA-44-2655 TCGA-44-2656 TCGA-44-2657 
       11.64        44.61         5.19        18.87        19.10        13.15 
TCGA-44-2659 TCGA-44-2661 TCGA-44-2662 TCGA-44-2665 TCGA-44-2666 TCGA-44-2668 
       17.39         3.39        15.78        13.15         3.19         8.09 
TCGA-44-3396 TCGA-44-3918 TCGA-44-3919 TCGA-44-4112 TCGA-44-5643 TCGA-44-5645 
       10.22         6.44         6.21         4.60         3.48         6.84 
TCGA-44-6144 TCGA-44-6145 TCGA-44-6146 TCGA-44-6147 TCGA-44-6148 TCGA-44-6775 
        0.30         3.35         9.93         7.76         3.12         2.70 
TCGA-44-6776 TCGA-44-6777 TCGA-44-6778 TCGA-44-6779 TCGA-49-4486 TCGA-49-4487 
       63.72        32.45        36.49        16.41        76.21        28.11 
TCGA-49-4488 TCGA-49-4490 TCGA-49-4494 TCGA-49-4501 TCGA-49-4505 TCGA-49-4506 
       28.57        12.66        35.54        46.72        14.07        32.84 
TCGA-49-4507 TCGA-49-4512 TCGA-49-4514 TCGA-49-6742 TCGA-49-6743 TCGA-49-6745 
        8.81        29.75        43.20        15.02        12.13         4.93 
TCGA-50-5044 TCGA-50-5045 TCGA-50-5049 TCGA-50-5051 TCGA-50-5055 TCGA-50-5066 
       20.48        71.47        48.82        14.96        25.81         9.76 
TCGA-50-5068 TCGA-50-5072 TCGA-50-5930 TCGA-50-5931 TCGA-50-5932 TCGA-50-5933 
       49.28         8.05         9.27         8.78        35.87        77.88 
TCGA-50-5935 TCGA-50-5936 TCGA-50-5939 TCGA-50-5941 TCGA-50-5942 TCGA-50-5944 
       21.47         8.45        15.12         9.37         4.44        12.26 
TCGA-50-5946 TCGA-50-6590 TCGA-50-6591 TCGA-50-6593 TCGA-50-6594 TCGA-50-6595 
       11.47        42.31         3.88        11.05        12.16         6.21 
TCGA-50-6597 TCGA-55-1592 TCGA-55-1594 TCGA-55-1595 TCGA-55-1596 TCGA-55-5899 
       33.37        23.05        38.73        48.62        45.17         2.86 
TCGA-55-6543 TCGA-55-6642 TCGA-55-6712 TCGA-64-1676 TCGA-64-1677 TCGA-64-1678 
        0.07        32.61         0.79        56.81        20.65        39.09 
TCGA-64-1680 TCGA-64-5774 TCGA-64-5775 TCGA-64-5778 TCGA-64-5779 TCGA-64-5781 
       37.02        83.84         0.10        30.44        16.67        39.52 
TCGA-64-5815 TCGA-67-3770 TCGA-67-3771 TCGA-67-3772 TCGA-67-3773 TCGA-67-3774 
        7.33         0.99         1.97         0.59         2.04         0.59 
TCGA-67-6215 TCGA-67-6216 TCGA-67-6217 TCGA-71-6725 TCGA-73-4658 TCGA-73-4659 
        0.89         0.69        13.87         2.01        52.57        23.38 
TCGA-73-4662 TCGA-73-4666 TCGA-73-4670 TCGA-73-4675 TCGA-73-4676 TCGA-73-4677 
       29.95        20.28         0.46         1.32         4.01         1.25 
TCGA-91-6828 TCGA-91-6829 TCGA-91-6831 TCGA-91-6835 TCGA-91-6836 
        1.22        41.33         1.28         1.15         0.36 

  GPRC6A MUTATED GPRC6A WILD-TYPE 
            5.42             0.07 
  GPRC6A MUTATED GPRC6A WILD-TYPE 
           47.05            85.32 
  GPRC6A MUTATED GPRC6A WILD-TYPE 
           13.96            13.87 
[1] "5.4 - 47.0 (14.0)" "0.1 - 85.3 (13.9)"
      TCGA-05-4249       TCGA-05-4250       TCGA-05-4382       TCGA-05-4384 
"GPRC6A WILD-TYPE" "GPRC6A WILD-TYPE" "GPRC6A WILD-TYPE" "GPRC6A WILD-TYPE" 
      TCGA-05-4390       TCGA-05-4396       TCGA-05-4397       TCGA-05-4398 
"GPRC6A WILD-TYPE"   "GPRC6A MUTATED" "GPRC6A WILD-TYPE"   "GPRC6A MUTATED" 
      TCGA-05-4402       TCGA-05-4405       TCGA-05-4415       TCGA-05-4417 
"GPRC6A WILD-TYPE" "GPRC6A WILD-TYPE" "GPRC6A WILD-TYPE"   "GPRC6A MUTATED" 
      TCGA-05-4418       TCGA-05-4420       TCGA-05-4424       TCGA-05-4426 
  "GPRC6A MUTATED" "GPRC6A WILD-TYPE" "GPRC6A WILD-TYPE" "GPRC6A WILD-TYPE" 
      TCGA-05-4427       TCGA-05-4430       TCGA-05-4432       TCGA-05-4433 
"GPRC6A WILD-TYPE" "GPRC6A WILD-TYPE"   "GPRC6A MUTATED" "GPRC6A WILD-TYPE" 
      TCGA-05-4434       TCGA-05-5420       TCGA-05-5423       TCGA-05-5425 
"GPRC6A WILD-TYPE" "GPRC6A WILD-TYPE" "GPRC6A WILD-TYPE" "GPRC6A WILD-TYPE" 
      TCGA-05-5429       TCGA-05-5715       TCGA-35-3615       TCGA-35-4122 
"GPRC6A WILD-TYPE" "GPRC6A WILD-TYPE" "GPRC6A WILD-TYPE" "GPRC6A WILD-TYPE" 
      TCGA-35-4123       TCGA-35-5375       TCGA-38-4625       TCGA-38-4626 
"GPRC6A WILD-TYPE"   "GPRC6A MUTATED" "GPRC6A WILD-TYPE" "GPRC6A WILD-TYPE" 
      TCGA-38-4627       TCGA-38-4628       TCGA-38-4629       TCGA-38-4630 
"GPRC6A WILD-TYPE" "GPRC6A WILD-TYPE" "GPRC6A WILD-TYPE" "GPRC6A WILD-TYPE" 
      TCGA-38-4631       TCGA-38-4632       TCGA-38-6178       TCGA-44-2655 
"GPRC6A WILD-TYPE" "GPRC6A WILD-TYPE" "GPRC6A WILD-TYPE" "GPRC6A WILD-TYPE" 
      TCGA-44-2656       TCGA-44-2657       TCGA-44-2659       TCGA-44-2661 
"GPRC6A WILD-TYPE" "GPRC6A WILD-TYPE" "GPRC6A WILD-TYPE" "GPRC6A WILD-TYPE" 
      TCGA-44-2662       TCGA-44-2665       TCGA-44-2666       TCGA-44-2668 
"GPRC6A WILD-TYPE" "GPRC6A WILD-TYPE" "GPRC6A WILD-TYPE" "GPRC6A WILD-TYPE" 
      TCGA-44-3396       TCGA-44-3398       TCGA-44-3918       TCGA-44-3919 
"GPRC6A WILD-TYPE"   "GPRC6A MUTATED" "GPRC6A WILD-TYPE" "GPRC6A WILD-TYPE" 
      TCGA-44-4112       TCGA-44-5643       TCGA-44-5645       TCGA-44-6144 
"GPRC6A WILD-TYPE" "GPRC6A WILD-TYPE" "GPRC6A WILD-TYPE" "GPRC6A WILD-TYPE" 
      TCGA-44-6145       TCGA-44-6146       TCGA-44-6147       TCGA-44-6148 
"GPRC6A WILD-TYPE" "GPRC6A WILD-TYPE" "GPRC6A WILD-TYPE" "GPRC6A WILD-TYPE" 
      TCGA-44-6774       TCGA-44-6775       TCGA-44-6776       TCGA-44-6777 
  "GPRC6A MUTATED" "GPRC6A WILD-TYPE" "GPRC6A WILD-TYPE" "GPRC6A WILD-TYPE" 
      TCGA-44-6778       TCGA-44-6779       TCGA-49-4486       TCGA-49-4487 
"GPRC6A WILD-TYPE" "GPRC6A WILD-TYPE" "GPRC6A WILD-TYPE" "GPRC6A WILD-TYPE" 
      TCGA-49-4488       TCGA-49-4490       TCGA-49-4494       TCGA-49-4501 
"GPRC6A WILD-TYPE" "GPRC6A WILD-TYPE" "GPRC6A WILD-TYPE" "GPRC6A WILD-TYPE" 
      TCGA-49-4505       TCGA-49-4506       TCGA-49-4507       TCGA-49-4510 
"GPRC6A WILD-TYPE" "GPRC6A WILD-TYPE" "GPRC6A WILD-TYPE"   "GPRC6A MUTATED" 
      TCGA-49-4512       TCGA-49-4514       TCGA-49-6742       TCGA-49-6743 
"GPRC6A WILD-TYPE" "GPRC6A WILD-TYPE" "GPRC6A WILD-TYPE" "GPRC6A WILD-TYPE" 
      TCGA-49-6744       TCGA-49-6745       TCGA-50-5044       TCGA-50-5045 
  "GPRC6A MUTATED" "GPRC6A WILD-TYPE" "GPRC6A WILD-TYPE" "GPRC6A WILD-TYPE" 
      TCGA-50-5049       TCGA-50-5051       TCGA-50-5055       TCGA-50-5066 
"GPRC6A WILD-TYPE" "GPRC6A WILD-TYPE" "GPRC6A WILD-TYPE" "GPRC6A WILD-TYPE" 
      TCGA-50-5068       TCGA-50-5072       TCGA-50-5930       TCGA-50-5931 
"GPRC6A WILD-TYPE" "GPRC6A WILD-TYPE" "GPRC6A WILD-TYPE" "GPRC6A WILD-TYPE" 
      TCGA-50-5932       TCGA-50-5933       TCGA-50-5935       TCGA-50-5936 
"GPRC6A WILD-TYPE" "GPRC6A WILD-TYPE" "GPRC6A WILD-TYPE" "GPRC6A WILD-TYPE" 
      TCGA-50-5939       TCGA-50-5941       TCGA-50-5942       TCGA-50-5944 
"GPRC6A WILD-TYPE" "GPRC6A WILD-TYPE" "GPRC6A WILD-TYPE" "GPRC6A WILD-TYPE" 
      TCGA-50-5946       TCGA-50-6590       TCGA-50-6591       TCGA-50-6592 
"GPRC6A WILD-TYPE" "GPRC6A WILD-TYPE" "GPRC6A WILD-TYPE"   "GPRC6A MUTATED" 
      TCGA-50-6593       TCGA-50-6594       TCGA-50-6595       TCGA-50-6597 
"GPRC6A WILD-TYPE" "GPRC6A WILD-TYPE" "GPRC6A WILD-TYPE" "GPRC6A WILD-TYPE" 
      TCGA-55-1592       TCGA-55-1594       TCGA-55-1595       TCGA-55-1596 
"GPRC6A WILD-TYPE" "GPRC6A WILD-TYPE" "GPRC6A WILD-TYPE" "GPRC6A WILD-TYPE" 
      TCGA-55-5899       TCGA-55-6543       TCGA-55-6642       TCGA-55-6712 
"GPRC6A WILD-TYPE" "GPRC6A WILD-TYPE" "GPRC6A WILD-TYPE" "GPRC6A WILD-TYPE" 
      TCGA-64-1676       TCGA-64-1677       TCGA-64-1678       TCGA-64-1680 
"GPRC6A WILD-TYPE" "GPRC6A WILD-TYPE" "GPRC6A WILD-TYPE" "GPRC6A WILD-TYPE" 
      TCGA-64-5774       TCGA-64-5775       TCGA-64-5778       TCGA-64-5779 
"GPRC6A WILD-TYPE" "GPRC6A WILD-TYPE" "GPRC6A WILD-TYPE" "GPRC6A WILD-TYPE" 
      TCGA-64-5781       TCGA-64-5815       TCGA-67-3770       TCGA-67-3771 
"GPRC6A WILD-TYPE" "GPRC6A WILD-TYPE" "GPRC6A WILD-TYPE" "GPRC6A WILD-TYPE" 
      TCGA-67-3772       TCGA-67-3773       TCGA-67-3774       TCGA-67-6215 
"GPRC6A WILD-TYPE" "GPRC6A WILD-TYPE" "GPRC6A WILD-TYPE" "GPRC6A WILD-TYPE" 
      TCGA-67-6216       TCGA-67-6217       TCGA-71-6725       TCGA-73-4658 
"GPRC6A WILD-TYPE" "GPRC6A WILD-TYPE" "GPRC6A WILD-TYPE" "GPRC6A WILD-TYPE" 
      TCGA-73-4659       TCGA-73-4662       TCGA-73-4666       TCGA-73-4668 
"GPRC6A WILD-TYPE" "GPRC6A WILD-TYPE" "GPRC6A WILD-TYPE"   "GPRC6A MUTATED" 
      TCGA-73-4670       TCGA-73-4675       TCGA-73-4676       TCGA-73-4677 
"GPRC6A WILD-TYPE" "GPRC6A WILD-TYPE" "GPRC6A WILD-TYPE" "GPRC6A WILD-TYPE" 
      TCGA-91-6828       TCGA-91-6829       TCGA-91-6831       TCGA-91-6835 
"GPRC6A WILD-TYPE" "GPRC6A WILD-TYPE" "GPRC6A WILD-TYPE" "GPRC6A WILD-TYPE" 
      TCGA-91-6836 
"GPRC6A WILD-TYPE" 
      TCGA-05-4249       TCGA-05-4250       TCGA-05-4382       TCGA-05-4384 
"GPRC6A WILD-TYPE" "GPRC6A WILD-TYPE" "GPRC6A WILD-TYPE" "GPRC6A WILD-TYPE" 
      TCGA-05-4390       TCGA-05-4396       TCGA-05-4397       TCGA-05-4398 
"GPRC6A WILD-TYPE"   "GPRC6A MUTATED" "GPRC6A WILD-TYPE"   "GPRC6A MUTATED" 
      TCGA-05-4402       TCGA-05-4405       TCGA-05-4415       TCGA-05-4417 
"GPRC6A WILD-TYPE" "GPRC6A WILD-TYPE" "GPRC6A WILD-TYPE"   "GPRC6A MUTATED" 
      TCGA-05-4418       TCGA-05-4420       TCGA-05-4424       TCGA-05-4426 
  "GPRC6A MUTATED" "GPRC6A WILD-TYPE" "GPRC6A WILD-TYPE" "GPRC6A WILD-TYPE" 
      TCGA-05-4427       TCGA-05-4430       TCGA-05-4432       TCGA-05-4433 
"GPRC6A WILD-TYPE" "GPRC6A WILD-TYPE"   "GPRC6A MUTATED" "GPRC6A WILD-TYPE" 
      TCGA-05-4434       TCGA-05-5420       TCGA-05-5423       TCGA-05-5425 
"GPRC6A WILD-TYPE" "GPRC6A WILD-TYPE" "GPRC6A WILD-TYPE" "GPRC6A WILD-TYPE" 
      TCGA-05-5429       TCGA-05-5715       TCGA-35-3615       TCGA-35-4122 
"GPRC6A WILD-TYPE" "GPRC6A WILD-TYPE" "GPRC6A WILD-TYPE" "GPRC6A WILD-TYPE" 
      TCGA-35-4123       TCGA-35-5375       TCGA-38-4625       TCGA-38-4626 
"GPRC6A WILD-TYPE"   "GPRC6A MUTATED" "GPRC6A WILD-TYPE" "GPRC6A WILD-TYPE" 
      TCGA-38-4627       TCGA-38-4628       TCGA-38-4629       TCGA-38-4630 
"GPRC6A WILD-TYPE" "GPRC6A WILD-TYPE" "GPRC6A WILD-TYPE" "GPRC6A WILD-TYPE" 
      TCGA-38-4631       TCGA-38-4632       TCGA-38-6178       TCGA-44-2655 
"GPRC6A WILD-TYPE" "GPRC6A WILD-TYPE" "GPRC6A WILD-TYPE" "GPRC6A WILD-TYPE" 
      TCGA-44-2656       TCGA-44-2657       TCGA-44-2659       TCGA-44-2661 
"GPRC6A WILD-TYPE" "GPRC6A WILD-TYPE" "GPRC6A WILD-TYPE" "GPRC6A WILD-TYPE" 
      TCGA-44-2662       TCGA-44-2665       TCGA-44-2666       TCGA-44-2668 
"GPRC6A WILD-TYPE" "GPRC6A WILD-TYPE" "GPRC6A WILD-TYPE" "GPRC6A WILD-TYPE" 
      TCGA-44-3396       TCGA-44-3398       TCGA-44-3918       TCGA-44-3919 
"GPRC6A WILD-TYPE"   "GPRC6A MUTATED" "GPRC6A WILD-TYPE" "GPRC6A WILD-TYPE" 
      TCGA-44-4112       TCGA-44-5643       TCGA-44-5645       TCGA-44-6144 
"GPRC6A WILD-TYPE" "GPRC6A WILD-TYPE" "GPRC6A WILD-TYPE" "GPRC6A WILD-TYPE" 
      TCGA-44-6145       TCGA-44-6146       TCGA-44-6147       TCGA-44-6148 
"GPRC6A WILD-TYPE" "GPRC6A WILD-TYPE" "GPRC6A WILD-TYPE" "GPRC6A WILD-TYPE" 
      TCGA-44-6774       TCGA-44-6775       TCGA-44-6776       TCGA-44-6777 
  "GPRC6A MUTATED" "GPRC6A WILD-TYPE" "GPRC6A WILD-TYPE" "GPRC6A WILD-TYPE" 
      TCGA-44-6778       TCGA-44-6779       TCGA-49-4486       TCGA-49-4487 
"GPRC6A WILD-TYPE" "GPRC6A WILD-TYPE" "GPRC6A WILD-TYPE" "GPRC6A WILD-TYPE" 
      TCGA-49-4488       TCGA-49-4490       TCGA-49-4494       TCGA-49-4501 
"GPRC6A WILD-TYPE" "GPRC6A WILD-TYPE" "GPRC6A WILD-TYPE" "GPRC6A WILD-TYPE" 
      TCGA-49-4505       TCGA-49-4506       TCGA-49-4507       TCGA-49-4510 
"GPRC6A WILD-TYPE" "GPRC6A WILD-TYPE" "GPRC6A WILD-TYPE"   "GPRC6A MUTATED" 
      TCGA-49-4512       TCGA-49-4514       TCGA-49-6742       TCGA-49-6743 
"GPRC6A WILD-TYPE" "GPRC6A WILD-TYPE" "GPRC6A WILD-TYPE" "GPRC6A WILD-TYPE" 
      TCGA-49-6744       TCGA-49-6745       TCGA-50-5044       TCGA-50-5045 
  "GPRC6A MUTATED" "GPRC6A WILD-TYPE" "GPRC6A WILD-TYPE" "GPRC6A WILD-TYPE" 
      TCGA-50-5049       TCGA-50-5051       TCGA-50-5055       TCGA-50-5066 
"GPRC6A WILD-TYPE" "GPRC6A WILD-TYPE" "GPRC6A WILD-TYPE" "GPRC6A WILD-TYPE" 
      TCGA-50-5068       TCGA-50-5072       TCGA-50-5930       TCGA-50-5931 
"GPRC6A WILD-TYPE" "GPRC6A WILD-TYPE" "GPRC6A WILD-TYPE" "GPRC6A WILD-TYPE" 
      TCGA-50-5932       TCGA-50-5933       TCGA-50-5935       TCGA-50-5936 
"GPRC6A WILD-TYPE" "GPRC6A WILD-TYPE" "GPRC6A WILD-TYPE" "GPRC6A WILD-TYPE" 
      TCGA-50-5939       TCGA-50-5941       TCGA-50-5942       TCGA-50-5944 
"GPRC6A WILD-TYPE" "GPRC6A WILD-TYPE" "GPRC6A WILD-TYPE" "GPRC6A WILD-TYPE" 
      TCGA-50-5946       TCGA-50-6590       TCGA-50-6591       TCGA-50-6592 
"GPRC6A WILD-TYPE" "GPRC6A WILD-TYPE" "GPRC6A WILD-TYPE"   "GPRC6A MUTATED" 
      TCGA-50-6593       TCGA-50-6594       TCGA-50-6595       TCGA-50-6597 
"GPRC6A WILD-TYPE" "GPRC6A WILD-TYPE" "GPRC6A WILD-TYPE" "GPRC6A WILD-TYPE" 
      TCGA-55-1592       TCGA-55-1594       TCGA-55-1595       TCGA-55-1596 
"GPRC6A WILD-TYPE" "GPRC6A WILD-TYPE" "GPRC6A WILD-TYPE" "GPRC6A WILD-TYPE" 
      TCGA-55-5899       TCGA-55-6543       TCGA-55-6642       TCGA-55-6712 
"GPRC6A WILD-TYPE" "GPRC6A WILD-TYPE" "GPRC6A WILD-TYPE" "GPRC6A WILD-TYPE" 
      TCGA-64-1676       TCGA-64-1677       TCGA-64-1678       TCGA-64-1680 
"GPRC6A WILD-TYPE" "GPRC6A WILD-TYPE" "GPRC6A WILD-TYPE" "GPRC6A WILD-TYPE" 
      TCGA-64-5774       TCGA-64-5775       TCGA-64-5778       TCGA-64-5779 
"GPRC6A WILD-TYPE" "GPRC6A WILD-TYPE" "GPRC6A WILD-TYPE" "GPRC6A WILD-TYPE" 
      TCGA-64-5781       TCGA-64-5815       TCGA-67-3770       TCGA-67-3771 
"GPRC6A WILD-TYPE" "GPRC6A WILD-TYPE" "GPRC6A WILD-TYPE" "GPRC6A WILD-TYPE" 
      TCGA-67-3772       TCGA-67-3773       TCGA-67-3774       TCGA-67-6215 
"GPRC6A WILD-TYPE" "GPRC6A WILD-TYPE" "GPRC6A WILD-TYPE" "GPRC6A WILD-TYPE" 
      TCGA-67-6216       TCGA-67-6217       TCGA-71-6725       TCGA-73-4658 
"GPRC6A WILD-TYPE" "GPRC6A WILD-TYPE" "GPRC6A WILD-TYPE" "GPRC6A WILD-TYPE" 
      TCGA-73-4659       TCGA-73-4662       TCGA-73-4666       TCGA-73-4668 
"GPRC6A WILD-TYPE" "GPRC6A WILD-TYPE" "GPRC6A WILD-TYPE"   "GPRC6A MUTATED" 
      TCGA-73-4670       TCGA-73-4675       TCGA-73-4676       TCGA-73-4677 
"GPRC6A WILD-TYPE" "GPRC6A WILD-TYPE" "GPRC6A WILD-TYPE" "GPRC6A WILD-TYPE" 
      TCGA-91-6828       TCGA-91-6829       TCGA-91-6831       TCGA-91-6835 
"GPRC6A WILD-TYPE" "GPRC6A WILD-TYPE" "GPRC6A WILD-TYPE" "GPRC6A WILD-TYPE" 
      TCGA-91-6836 
"GPRC6A WILD-TYPE" 
      TCGA-05-4249       TCGA-05-4250       TCGA-05-4382       TCGA-05-4384 
"GPRC6A WILD-TYPE" "GPRC6A WILD-TYPE" "GPRC6A WILD-TYPE" "GPRC6A WILD-TYPE" 
      TCGA-05-4390       TCGA-05-4396       TCGA-05-4397       TCGA-05-4398 
"GPRC6A WILD-TYPE"   "GPRC6A MUTATED" "GPRC6A WILD-TYPE"   "GPRC6A MUTATED" 
      TCGA-05-4402       TCGA-05-4405       TCGA-05-4415       TCGA-05-4417 
"GPRC6A WILD-TYPE" "GPRC6A WILD-TYPE" "GPRC6A WILD-TYPE"   "GPRC6A MUTATED" 
      TCGA-05-4418       TCGA-05-4420       TCGA-05-4424       TCGA-05-4426 
  "GPRC6A MUTATED" "GPRC6A WILD-TYPE" "GPRC6A WILD-TYPE" "GPRC6A WILD-TYPE" 
      TCGA-05-4427       TCGA-05-4430       TCGA-05-4432       TCGA-05-4433 
"GPRC6A WILD-TYPE" "GPRC6A WILD-TYPE"   "GPRC6A MUTATED" "GPRC6A WILD-TYPE" 
      TCGA-05-4434       TCGA-05-5420       TCGA-05-5423       TCGA-05-5425 
"GPRC6A WILD-TYPE" "GPRC6A WILD-TYPE" "GPRC6A WILD-TYPE" "GPRC6A WILD-TYPE" 
      TCGA-05-5429       TCGA-05-5715       TCGA-35-3615       TCGA-35-4122 
"GPRC6A WILD-TYPE" "GPRC6A WILD-TYPE" "GPRC6A WILD-TYPE" "GPRC6A WILD-TYPE" 
      TCGA-35-4123       TCGA-35-5375       TCGA-38-4625       TCGA-38-4626 
"GPRC6A WILD-TYPE"   "GPRC6A MUTATED" "GPRC6A WILD-TYPE" "GPRC6A WILD-TYPE" 
      TCGA-38-4627       TCGA-38-4628       TCGA-38-4629       TCGA-38-4630 
"GPRC6A WILD-TYPE" "GPRC6A WILD-TYPE" "GPRC6A WILD-TYPE" "GPRC6A WILD-TYPE" 
      TCGA-38-4631       TCGA-38-4632       TCGA-38-6178       TCGA-44-2655 
"GPRC6A WILD-TYPE" "GPRC6A WILD-TYPE" "GPRC6A WILD-TYPE" "GPRC6A WILD-TYPE" 
      TCGA-44-2656       TCGA-44-2657       TCGA-44-2659       TCGA-44-2661 
"GPRC6A WILD-TYPE" "GPRC6A WILD-TYPE" "GPRC6A WILD-TYPE" "GPRC6A WILD-TYPE" 
      TCGA-44-2662       TCGA-44-2665       TCGA-44-2666       TCGA-44-2668 
"GPRC6A WILD-TYPE" "GPRC6A WILD-TYPE" "GPRC6A WILD-TYPE" "GPRC6A WILD-TYPE" 
      TCGA-44-3396       TCGA-44-3398       TCGA-44-3918       TCGA-44-3919 
"GPRC6A WILD-TYPE"   "GPRC6A MUTATED" "GPRC6A WILD-TYPE" "GPRC6A WILD-TYPE" 
      TCGA-44-4112       TCGA-44-5643       TCGA-44-5645       TCGA-44-6144 
"GPRC6A WILD-TYPE" "GPRC6A WILD-TYPE" "GPRC6A WILD-TYPE" "GPRC6A WILD-TYPE" 
      TCGA-44-6145       TCGA-44-6146       TCGA-44-6147       TCGA-44-6148 
"GPRC6A WILD-TYPE" "GPRC6A WILD-TYPE" "GPRC6A WILD-TYPE" "GPRC6A WILD-TYPE" 
      TCGA-44-6774       TCGA-44-6775       TCGA-44-6776       TCGA-44-6777 
  "GPRC6A MUTATED" "GPRC6A WILD-TYPE" "GPRC6A WILD-TYPE" "GPRC6A WILD-TYPE" 
      TCGA-44-6778       TCGA-44-6779       TCGA-49-4486       TCGA-49-4487 
"GPRC6A WILD-TYPE" "GPRC6A WILD-TYPE" "GPRC6A WILD-TYPE" "GPRC6A WILD-TYPE" 
      TCGA-49-4488       TCGA-49-4490       TCGA-49-4494       TCGA-49-4501 
"GPRC6A WILD-TYPE" "GPRC6A WILD-TYPE" "GPRC6A WILD-TYPE" "GPRC6A WILD-TYPE" 
      TCGA-49-4505       TCGA-49-4506       TCGA-49-4507       TCGA-49-4510 
"GPRC6A WILD-TYPE" "GPRC6A WILD-TYPE" "GPRC6A WILD-TYPE"   "GPRC6A MUTATED" 
      TCGA-49-4512       TCGA-49-4514       TCGA-49-6742       TCGA-49-6743 
"GPRC6A WILD-TYPE" "GPRC6A WILD-TYPE" "GPRC6A WILD-TYPE" "GPRC6A WILD-TYPE" 
      TCGA-49-6744       TCGA-49-6745       TCGA-50-5044       TCGA-50-5045 
  "GPRC6A MUTATED" "GPRC6A WILD-TYPE" "GPRC6A WILD-TYPE" "GPRC6A WILD-TYPE" 
      TCGA-50-5049       TCGA-50-5051       TCGA-50-5055       TCGA-50-5066 
"GPRC6A WILD-TYPE" "GPRC6A WILD-TYPE" "GPRC6A WILD-TYPE" "GPRC6A WILD-TYPE" 
      TCGA-50-5068       TCGA-50-5072       TCGA-50-5930       TCGA-50-5931 
"GPRC6A WILD-TYPE" "GPRC6A WILD-TYPE" "GPRC6A WILD-TYPE" "GPRC6A WILD-TYPE" 
      TCGA-50-5932       TCGA-50-5933       TCGA-50-5935       TCGA-50-5936 
"GPRC6A WILD-TYPE" "GPRC6A WILD-TYPE" "GPRC6A WILD-TYPE" "GPRC6A WILD-TYPE" 
      TCGA-50-5939       TCGA-50-5941       TCGA-50-5942       TCGA-50-5944 
"GPRC6A WILD-TYPE" "GPRC6A WILD-TYPE" "GPRC6A WILD-TYPE" "GPRC6A WILD-TYPE" 
      TCGA-50-5946       TCGA-50-6590       TCGA-50-6591       TCGA-50-6592 
"GPRC6A WILD-TYPE" "GPRC6A WILD-TYPE" "GPRC6A WILD-TYPE"   "GPRC6A MUTATED" 
      TCGA-50-6593       TCGA-50-6594       TCGA-50-6595       TCGA-50-6597 
"GPRC6A WILD-TYPE" "GPRC6A WILD-TYPE" "GPRC6A WILD-TYPE" "GPRC6A WILD-TYPE" 
      TCGA-55-1592       TCGA-55-1594       TCGA-55-1595       TCGA-55-1596 
"GPRC6A WILD-TYPE" "GPRC6A WILD-TYPE" "GPRC6A WILD-TYPE" "GPRC6A WILD-TYPE" 
      TCGA-55-5899       TCGA-55-6543       TCGA-55-6642       TCGA-55-6712 
"GPRC6A WILD-TYPE" "GPRC6A WILD-TYPE" "GPRC6A WILD-TYPE" "GPRC6A WILD-TYPE" 
      TCGA-64-1676       TCGA-64-1677       TCGA-64-1678       TCGA-64-1680 
"GPRC6A WILD-TYPE" "GPRC6A WILD-TYPE" "GPRC6A WILD-TYPE" "GPRC6A WILD-TYPE" 
      TCGA-64-5774       TCGA-64-5775       TCGA-64-5778       TCGA-64-5779 
"GPRC6A WILD-TYPE" "GPRC6A WILD-TYPE" "GPRC6A WILD-TYPE" "GPRC6A WILD-TYPE" 
      TCGA-64-5781       TCGA-64-5815       TCGA-67-3770       TCGA-67-3771 
"GPRC6A WILD-TYPE" "GPRC6A WILD-TYPE" "GPRC6A WILD-TYPE" "GPRC6A WILD-TYPE" 
      TCGA-67-3772       TCGA-67-3773       TCGA-67-3774       TCGA-67-6215 
"GPRC6A WILD-TYPE" "GPRC6A WILD-TYPE" "GPRC6A WILD-TYPE" "GPRC6A WILD-TYPE" 
      TCGA-67-6216       TCGA-67-6217       TCGA-71-6725       TCGA-73-4658 
"GPRC6A WILD-TYPE" "GPRC6A WILD-TYPE" "GPRC6A WILD-TYPE" "GPRC6A WILD-TYPE" 
      TCGA-73-4659       TCGA-73-4662       TCGA-73-4666       TCGA-73-4668 
"GPRC6A WILD-TYPE" "GPRC6A WILD-TYPE" "GPRC6A WILD-TYPE"   "GPRC6A MUTATED" 
      TCGA-73-4670       TCGA-73-4675       TCGA-73-4676       TCGA-73-4677 
"GPRC6A WILD-TYPE" "GPRC6A WILD-TYPE" "GPRC6A WILD-TYPE" "GPRC6A WILD-TYPE" 
      TCGA-91-6828       TCGA-91-6829       TCGA-91-6831       TCGA-91-6835 
"GPRC6A WILD-TYPE" "GPRC6A WILD-TYPE" "GPRC6A WILD-TYPE" "GPRC6A WILD-TYPE" 
      TCGA-91-6836 
"GPRC6A WILD-TYPE" 
[1] "hr=" "1.3"
D260V2, continuous
D260V3, binary
[1] "tbl2"
                  cls
clus               [,1] [,2]
  GPRC6A MUTATED      8    4
  GPRC6A WILD-TYPE   85   75
        clus
vv       GPRC6A MUTATED GPRC6A WILD-TYPE
  FEMALE              8               85
  MALE                4               75
D260V4, continuous
[1] "Remove cluster labels:" "GPRC6A MUTATED"        
clus
  GPRC6A MUTATED GPRC6A WILD-TYPE 
               2               10 
      TCGA-35-4122       TCGA-35-4123       TCGA-64-1677       TCGA-64-5778 
"GPRC6A WILD-TYPE" "GPRC6A WILD-TYPE" "GPRC6A WILD-TYPE" "GPRC6A WILD-TYPE" 
      TCGA-71-6725       TCGA-73-4659       TCGA-73-4662       TCGA-73-4666 
"GPRC6A WILD-TYPE" "GPRC6A WILD-TYPE" "GPRC6A WILD-TYPE" "GPRC6A WILD-TYPE" 
      TCGA-73-4676       TCGA-75-5122 
"GPRC6A WILD-TYPE" "GPRC6A WILD-TYPE" 
D260V5, multiclass
D260V6, multiclass
    clus
vv   GPRC6A MUTATED GPRC6A WILD-TYPE
  T1              2               39
  T2              7              101
  T3              1               13
  T4              2                6
D260V7, multiclass
       clus
vv      GPRC6A MUTATED GPRC6A WILD-TYPE
  N0                 3               92
  N1                 5               32
  N2+N3              4               31
D260V8, multiclass
    clus
vv   GPRC6A MUTATED GPRC6A WILD-TYPE
  M0             11              126
  M1              0                9
  MX              1               21
D260V9, multiclass
     clus
vv    GPRC6A MUTATED GPRC6A WILD-TYPE
  I                3               85
  II               4               29
  III              5               34
  IV               0                9
D260V10, binary
[1] "tbl2"
                  cls
clus               [,1] [,2]
  GPRC6A MUTATED      0   12
  GPRC6A WILD-TYPE   16  144
     clus
vv    GPRC6A MUTATED GPRC6A WILD-TYPE
  NO               0               16
  YES             12              144
D260V11, continuous
D260V12, continuous
D260V13, multiclass
                                             clus
vv                                            GPRC6A MUTATED GPRC6A WILD-TYPE
  CURRENT REFORMED SMOKER FOR < OR = 15 YEARS              6               56
  CURRENT REFORMED SMOKER FOR > 15 YEARS                   1               45
  CURRENT SMOKER                                           5               23
  LIFELONG NON-SMOKER                                      0               24
D260V14, continuous

Clustering(261) Variable = OC90 MUTATION ANALYSIS
D261V1, survival
                sevent
clus2             0  1
  OC90 MUTATED    3  5
  OC90 WILD-TYPE 96 45
  OC90 MUTATED OC90 WILD-TYPE 
             8            141 
  OC90 MUTATED OC90 WILD-TYPE 
             5             45 
$`OC90 MUTATED`
TCGA-49-4507 TCGA-49-6742 TCGA-50-5045 TCGA-50-5049 TCGA-50-6593 TCGA-55-1595 
        8.81        15.02        71.47        48.82        11.05        48.62 
TCGA-73-4677 TCGA-91-6829 
        1.25        41.33 

$`OC90 WILD-TYPE`
TCGA-05-4249 TCGA-05-4250 TCGA-05-4382 TCGA-05-4384 TCGA-05-4390 TCGA-05-4396 
       38.07         3.98        19.92        14.01        37.02         9.96 
TCGA-05-4397 TCGA-05-4398 TCGA-05-4402 TCGA-05-4405 TCGA-05-4415 TCGA-05-4417 
       24.03        47.05         8.02        20.05         2.96        14.93 
TCGA-05-4418 TCGA-05-4420 TCGA-05-4424 TCGA-05-4426 TCGA-05-4427 TCGA-05-4430 
        8.98        29.95        30.02        26.01        26.01        25.02 
TCGA-05-4432 TCGA-05-4433 TCGA-05-4434 TCGA-05-5420 TCGA-05-5423 TCGA-05-5425 
       25.02        24.00        15.02         1.02         4.96         2.96 
TCGA-05-5429 TCGA-05-5715 TCGA-35-3615 TCGA-35-4122 TCGA-35-4123 TCGA-35-5375 
        0.99         2.04         0.46         7.36         5.95         8.68 
TCGA-38-4625 TCGA-38-4626 TCGA-38-4627 TCGA-38-4628 TCGA-38-4629 TCGA-38-4630 
       47.61        85.32        37.71        49.02        28.37        35.28 
TCGA-38-4631 TCGA-38-4632 TCGA-38-6178 TCGA-44-2655 TCGA-44-2656 TCGA-44-2657 
       11.64        44.61         5.19        18.87        19.10        13.15 
TCGA-44-2659 TCGA-44-2661 TCGA-44-2662 TCGA-44-2665 TCGA-44-2666 TCGA-44-2668 
       17.39         3.39        15.78        13.15         3.19         8.09 
TCGA-44-3396 TCGA-44-3398 TCGA-44-3918 TCGA-44-3919 TCGA-44-4112 TCGA-44-5643 
       10.22         8.32         6.44         6.21         4.60         3.48 
TCGA-44-5645 TCGA-44-6144 TCGA-44-6145 TCGA-44-6146 TCGA-44-6147 TCGA-44-6148 
        6.84         0.30         3.35         9.93         7.76         3.12 
TCGA-44-6774 TCGA-44-6775 TCGA-44-6776 TCGA-44-6777 TCGA-44-6778 TCGA-44-6779 
        5.42         2.70        63.72        32.45        36.49        16.41 
TCGA-49-4486 TCGA-49-4487 TCGA-49-4488 TCGA-49-4490 TCGA-49-4494 TCGA-49-4501 
       76.21        28.11        28.57        12.66        35.54        46.72 
TCGA-49-4505 TCGA-49-4506 TCGA-49-4510 TCGA-49-4512 TCGA-49-4514 TCGA-49-6743 
       14.07        32.84        29.46        29.75        43.20        12.13 
TCGA-49-6744 TCGA-49-6745 TCGA-50-5044 TCGA-50-5051 TCGA-50-5055 TCGA-50-5066 
       12.99         4.93        20.48        14.96        25.81         9.76 
TCGA-50-5068 TCGA-50-5072 TCGA-50-5930 TCGA-50-5931 TCGA-50-5932 TCGA-50-5933 
       49.28         8.05         9.27         8.78        35.87        77.88 
TCGA-50-5935 TCGA-50-5936 TCGA-50-5939 TCGA-50-5941 TCGA-50-5942 TCGA-50-5944 
       21.47         8.45        15.12         9.37         4.44        12.26 
TCGA-50-5946 TCGA-50-6590 TCGA-50-6591 TCGA-50-6592 TCGA-50-6594 TCGA-50-6595 
       11.47        42.31         3.88        25.51        12.16         6.21 
TCGA-50-6597 TCGA-55-1592 TCGA-55-1594 TCGA-55-1596 TCGA-55-5899 TCGA-55-6543 
       33.37        23.05        38.73        45.17         2.86         0.07 
TCGA-55-6642 TCGA-55-6712 TCGA-64-1676 TCGA-64-1677 TCGA-64-1678 TCGA-64-1680 
       32.61         0.79        56.81        20.65        39.09        37.02 
TCGA-64-5774 TCGA-64-5775 TCGA-64-5778 TCGA-64-5779 TCGA-64-5781 TCGA-64-5815 
       83.84         0.10        30.44        16.67        39.52         7.33 
TCGA-67-3770 TCGA-67-3771 TCGA-67-3772 TCGA-67-3773 TCGA-67-3774 TCGA-67-6215 
        0.99         1.97         0.59         2.04         0.59         0.89 
TCGA-67-6216 TCGA-67-6217 TCGA-71-6725 TCGA-73-4658 TCGA-73-4659 TCGA-73-4662 
        0.69        13.87         2.01        52.57        23.38        29.95 
TCGA-73-4666 TCGA-73-4668 TCGA-73-4670 TCGA-73-4675 TCGA-73-4676 TCGA-91-6828 
       20.28        15.35         0.46         1.32         4.01         1.22 
TCGA-91-6831 TCGA-91-6835 TCGA-91-6836 
        1.28         1.15         0.36 

  OC90 MUTATED OC90 WILD-TYPE 
          1.25           0.07 
  OC90 MUTATED OC90 WILD-TYPE 
         71.47          85.32 
  OC90 MUTATED OC90 WILD-TYPE 
        28.175         13.150 
[1] "1.2 - 71.5 (28.2)" "0.1 - 85.3 (13.2)"
    TCGA-05-4249     TCGA-05-4250     TCGA-05-4382     TCGA-05-4384 
"OC90 WILD-TYPE" "OC90 WILD-TYPE" "OC90 WILD-TYPE" "OC90 WILD-TYPE" 
    TCGA-05-4390     TCGA-05-4396     TCGA-05-4397     TCGA-05-4398 
"OC90 WILD-TYPE" "OC90 WILD-TYPE" "OC90 WILD-TYPE" "OC90 WILD-TYPE" 
    TCGA-05-4402     TCGA-05-4405     TCGA-05-4415     TCGA-05-4417 
"OC90 WILD-TYPE" "OC90 WILD-TYPE" "OC90 WILD-TYPE" "OC90 WILD-TYPE" 
    TCGA-05-4418     TCGA-05-4420     TCGA-05-4424     TCGA-05-4426 
"OC90 WILD-TYPE" "OC90 WILD-TYPE" "OC90 WILD-TYPE" "OC90 WILD-TYPE" 
    TCGA-05-4427     TCGA-05-4430     TCGA-05-4432     TCGA-05-4433 
"OC90 WILD-TYPE" "OC90 WILD-TYPE" "OC90 WILD-TYPE" "OC90 WILD-TYPE" 
    TCGA-05-4434     TCGA-05-5420     TCGA-05-5423     TCGA-05-5425 
"OC90 WILD-TYPE" "OC90 WILD-TYPE" "OC90 WILD-TYPE" "OC90 WILD-TYPE" 
    TCGA-05-5429     TCGA-05-5715     TCGA-35-3615     TCGA-35-4122 
"OC90 WILD-TYPE" "OC90 WILD-TYPE" "OC90 WILD-TYPE" "OC90 WILD-TYPE" 
    TCGA-35-4123     TCGA-35-5375     TCGA-38-4625     TCGA-38-4626 
"OC90 WILD-TYPE" "OC90 WILD-TYPE" "OC90 WILD-TYPE" "OC90 WILD-TYPE" 
    TCGA-38-4627     TCGA-38-4628     TCGA-38-4629     TCGA-38-4630 
"OC90 WILD-TYPE" "OC90 WILD-TYPE" "OC90 WILD-TYPE" "OC90 WILD-TYPE" 
    TCGA-38-4631     TCGA-38-4632     TCGA-38-6178     TCGA-44-2655 
"OC90 WILD-TYPE" "OC90 WILD-TYPE" "OC90 WILD-TYPE" "OC90 WILD-TYPE" 
    TCGA-44-2656     TCGA-44-2657     TCGA-44-2659     TCGA-44-2661 
"OC90 WILD-TYPE" "OC90 WILD-TYPE" "OC90 WILD-TYPE" "OC90 WILD-TYPE" 
    TCGA-44-2662     TCGA-44-2665     TCGA-44-2666     TCGA-44-2668 
"OC90 WILD-TYPE" "OC90 WILD-TYPE" "OC90 WILD-TYPE" "OC90 WILD-TYPE" 
    TCGA-44-3396     TCGA-44-3398     TCGA-44-3918     TCGA-44-3919 
"OC90 WILD-TYPE" "OC90 WILD-TYPE" "OC90 WILD-TYPE" "OC90 WILD-TYPE" 
    TCGA-44-4112     TCGA-44-5643     TCGA-44-5645     TCGA-44-6144 
"OC90 WILD-TYPE" "OC90 WILD-TYPE" "OC90 WILD-TYPE" "OC90 WILD-TYPE" 
    TCGA-44-6145     TCGA-44-6146     TCGA-44-6147     TCGA-44-6148 
"OC90 WILD-TYPE" "OC90 WILD-TYPE" "OC90 WILD-TYPE" "OC90 WILD-TYPE" 
    TCGA-44-6774     TCGA-44-6775     TCGA-44-6776     TCGA-44-6777 
"OC90 WILD-TYPE" "OC90 WILD-TYPE" "OC90 WILD-TYPE" "OC90 WILD-TYPE" 
    TCGA-44-6778     TCGA-44-6779     TCGA-49-4486     TCGA-49-4487 
"OC90 WILD-TYPE" "OC90 WILD-TYPE" "OC90 WILD-TYPE" "OC90 WILD-TYPE" 
    TCGA-49-4488     TCGA-49-4490     TCGA-49-4494     TCGA-49-4501 
"OC90 WILD-TYPE" "OC90 WILD-TYPE" "OC90 WILD-TYPE" "OC90 WILD-TYPE" 
    TCGA-49-4505     TCGA-49-4506     TCGA-49-4507     TCGA-49-4510 
"OC90 WILD-TYPE" "OC90 WILD-TYPE"   "OC90 MUTATED" "OC90 WILD-TYPE" 
    TCGA-49-4512     TCGA-49-4514     TCGA-49-6742     TCGA-49-6743 
"OC90 WILD-TYPE" "OC90 WILD-TYPE"   "OC90 MUTATED" "OC90 WILD-TYPE" 
    TCGA-49-6744     TCGA-49-6745     TCGA-50-5044     TCGA-50-5045 
"OC90 WILD-TYPE" "OC90 WILD-TYPE" "OC90 WILD-TYPE"   "OC90 MUTATED" 
    TCGA-50-5049     TCGA-50-5051     TCGA-50-5055     TCGA-50-5066 
  "OC90 MUTATED" "OC90 WILD-TYPE" "OC90 WILD-TYPE" "OC90 WILD-TYPE" 
    TCGA-50-5068     TCGA-50-5072     TCGA-50-5930     TCGA-50-5931 
"OC90 WILD-TYPE" "OC90 WILD-TYPE" "OC90 WILD-TYPE" "OC90 WILD-TYPE" 
    TCGA-50-5932     TCGA-50-5933     TCGA-50-5935     TCGA-50-5936 
"OC90 WILD-TYPE" "OC90 WILD-TYPE" "OC90 WILD-TYPE" "OC90 WILD-TYPE" 
    TCGA-50-5939     TCGA-50-5941     TCGA-50-5942     TCGA-50-5944 
"OC90 WILD-TYPE" "OC90 WILD-TYPE" "OC90 WILD-TYPE" "OC90 WILD-TYPE" 
    TCGA-50-5946     TCGA-50-6590     TCGA-50-6591     TCGA-50-6592 
"OC90 WILD-TYPE" "OC90 WILD-TYPE" "OC90 WILD-TYPE" "OC90 WILD-TYPE" 
    TCGA-50-6593     TCGA-50-6594     TCGA-50-6595     TCGA-50-6597 
  "OC90 MUTATED" "OC90 WILD-TYPE" "OC90 WILD-TYPE" "OC90 WILD-TYPE" 
    TCGA-55-1592     TCGA-55-1594     TCGA-55-1595     TCGA-55-1596 
"OC90 WILD-TYPE" "OC90 WILD-TYPE"   "OC90 MUTATED" "OC90 WILD-TYPE" 
    TCGA-55-5899     TCGA-55-6543     TCGA-55-6642     TCGA-55-6712 
"OC90 WILD-TYPE" "OC90 WILD-TYPE" "OC90 WILD-TYPE" "OC90 WILD-TYPE" 
    TCGA-64-1676     TCGA-64-1677     TCGA-64-1678     TCGA-64-1680 
"OC90 WILD-TYPE" "OC90 WILD-TYPE" "OC90 WILD-TYPE" "OC90 WILD-TYPE" 
    TCGA-64-5774     TCGA-64-5775     TCGA-64-5778     TCGA-64-5779 
"OC90 WILD-TYPE" "OC90 WILD-TYPE" "OC90 WILD-TYPE" "OC90 WILD-TYPE" 
    TCGA-64-5781     TCGA-64-5815     TCGA-67-3770     TCGA-67-3771 
"OC90 WILD-TYPE" "OC90 WILD-TYPE" "OC90 WILD-TYPE" "OC90 WILD-TYPE" 
    TCGA-67-3772     TCGA-67-3773     TCGA-67-3774     TCGA-67-6215 
"OC90 WILD-TYPE" "OC90 WILD-TYPE" "OC90 WILD-TYPE" "OC90 WILD-TYPE" 
    TCGA-67-6216     TCGA-67-6217     TCGA-71-6725     TCGA-73-4658 
"OC90 WILD-TYPE" "OC90 WILD-TYPE" "OC90 WILD-TYPE" "OC90 WILD-TYPE" 
    TCGA-73-4659     TCGA-73-4662     TCGA-73-4666     TCGA-73-4668 
"OC90 WILD-TYPE" "OC90 WILD-TYPE" "OC90 WILD-TYPE" "OC90 WILD-TYPE" 
    TCGA-73-4670     TCGA-73-4675     TCGA-73-4676     TCGA-73-4677 
"OC90 WILD-TYPE" "OC90 WILD-TYPE" "OC90 WILD-TYPE"   "OC90 MUTATED" 
    TCGA-91-6828     TCGA-91-6829     TCGA-91-6831     TCGA-91-6835 
"OC90 WILD-TYPE"   "OC90 MUTATED" "OC90 WILD-TYPE" "OC90 WILD-TYPE" 
    TCGA-91-6836 
"OC90 WILD-TYPE" 
    TCGA-05-4249     TCGA-05-4250     TCGA-05-4382     TCGA-05-4384 
"OC90 WILD-TYPE" "OC90 WILD-TYPE" "OC90 WILD-TYPE" "OC90 WILD-TYPE" 
    TCGA-05-4390     TCGA-05-4396     TCGA-05-4397     TCGA-05-4398 
"OC90 WILD-TYPE" "OC90 WILD-TYPE" "OC90 WILD-TYPE" "OC90 WILD-TYPE" 
    TCGA-05-4402     TCGA-05-4405     TCGA-05-4415     TCGA-05-4417 
"OC90 WILD-TYPE" "OC90 WILD-TYPE" "OC90 WILD-TYPE" "OC90 WILD-TYPE" 
    TCGA-05-4418     TCGA-05-4420     TCGA-05-4424     TCGA-05-4426 
"OC90 WILD-TYPE" "OC90 WILD-TYPE" "OC90 WILD-TYPE" "OC90 WILD-TYPE" 
    TCGA-05-4427     TCGA-05-4430     TCGA-05-4432     TCGA-05-4433 
"OC90 WILD-TYPE" "OC90 WILD-TYPE" "OC90 WILD-TYPE" "OC90 WILD-TYPE" 
    TCGA-05-4434     TCGA-05-5420     TCGA-05-5423     TCGA-05-5425 
"OC90 WILD-TYPE" "OC90 WILD-TYPE" "OC90 WILD-TYPE" "OC90 WILD-TYPE" 
    TCGA-05-5429     TCGA-05-5715     TCGA-35-3615     TCGA-35-4122 
"OC90 WILD-TYPE" "OC90 WILD-TYPE" "OC90 WILD-TYPE" "OC90 WILD-TYPE" 
    TCGA-35-4123     TCGA-35-5375     TCGA-38-4625     TCGA-38-4626 
"OC90 WILD-TYPE" "OC90 WILD-TYPE" "OC90 WILD-TYPE" "OC90 WILD-TYPE" 
    TCGA-38-4627     TCGA-38-4628     TCGA-38-4629     TCGA-38-4630 
"OC90 WILD-TYPE" "OC90 WILD-TYPE" "OC90 WILD-TYPE" "OC90 WILD-TYPE" 
    TCGA-38-4631     TCGA-38-4632     TCGA-38-6178     TCGA-44-2655 
"OC90 WILD-TYPE" "OC90 WILD-TYPE" "OC90 WILD-TYPE" "OC90 WILD-TYPE" 
    TCGA-44-2656     TCGA-44-2657     TCGA-44-2659     TCGA-44-2661 
"OC90 WILD-TYPE" "OC90 WILD-TYPE" "OC90 WILD-TYPE" "OC90 WILD-TYPE" 
    TCGA-44-2662     TCGA-44-2665     TCGA-44-2666     TCGA-44-2668 
"OC90 WILD-TYPE" "OC90 WILD-TYPE" "OC90 WILD-TYPE" "OC90 WILD-TYPE" 
    TCGA-44-3396     TCGA-44-3398     TCGA-44-3918     TCGA-44-3919 
"OC90 WILD-TYPE" "OC90 WILD-TYPE" "OC90 WILD-TYPE" "OC90 WILD-TYPE" 
    TCGA-44-4112     TCGA-44-5643     TCGA-44-5645     TCGA-44-6144 
"OC90 WILD-TYPE" "OC90 WILD-TYPE" "OC90 WILD-TYPE" "OC90 WILD-TYPE" 
    TCGA-44-6145     TCGA-44-6146     TCGA-44-6147     TCGA-44-6148 
"OC90 WILD-TYPE" "OC90 WILD-TYPE" "OC90 WILD-TYPE" "OC90 WILD-TYPE" 
    TCGA-44-6774     TCGA-44-6775     TCGA-44-6776     TCGA-44-6777 
"OC90 WILD-TYPE" "OC90 WILD-TYPE" "OC90 WILD-TYPE" "OC90 WILD-TYPE" 
    TCGA-44-6778     TCGA-44-6779     TCGA-49-4486     TCGA-49-4487 
"OC90 WILD-TYPE" "OC90 WILD-TYPE" "OC90 WILD-TYPE" "OC90 WILD-TYPE" 
    TCGA-49-4488     TCGA-49-4490     TCGA-49-4494     TCGA-49-4501 
"OC90 WILD-TYPE" "OC90 WILD-TYPE" "OC90 WILD-TYPE" "OC90 WILD-TYPE" 
    TCGA-49-4505     TCGA-49-4506     TCGA-49-4507     TCGA-49-4510 
"OC90 WILD-TYPE" "OC90 WILD-TYPE"   "OC90 MUTATED" "OC90 WILD-TYPE" 
    TCGA-49-4512     TCGA-49-4514     TCGA-49-6742     TCGA-49-6743 
"OC90 WILD-TYPE" "OC90 WILD-TYPE"   "OC90 MUTATED" "OC90 WILD-TYPE" 
    TCGA-49-6744     TCGA-49-6745     TCGA-50-5044     TCGA-50-5045 
"OC90 WILD-TYPE" "OC90 WILD-TYPE" "OC90 WILD-TYPE"   "OC90 MUTATED" 
    TCGA-50-5049     TCGA-50-5051     TCGA-50-5055     TCGA-50-5066 
  "OC90 MUTATED" "OC90 WILD-TYPE" "OC90 WILD-TYPE" "OC90 WILD-TYPE" 
    TCGA-50-5068     TCGA-50-5072     TCGA-50-5930     TCGA-50-5931 
"OC90 WILD-TYPE" "OC90 WILD-TYPE" "OC90 WILD-TYPE" "OC90 WILD-TYPE" 
    TCGA-50-5932     TCGA-50-5933     TCGA-50-5935     TCGA-50-5936 
"OC90 WILD-TYPE" "OC90 WILD-TYPE" "OC90 WILD-TYPE" "OC90 WILD-TYPE" 
    TCGA-50-5939     TCGA-50-5941     TCGA-50-5942     TCGA-50-5944 
"OC90 WILD-TYPE" "OC90 WILD-TYPE" "OC90 WILD-TYPE" "OC90 WILD-TYPE" 
    TCGA-50-5946     TCGA-50-6590     TCGA-50-6591     TCGA-50-6592 
"OC90 WILD-TYPE" "OC90 WILD-TYPE" "OC90 WILD-TYPE" "OC90 WILD-TYPE" 
    TCGA-50-6593     TCGA-50-6594     TCGA-50-6595     TCGA-50-6597 
  "OC90 MUTATED" "OC90 WILD-TYPE" "OC90 WILD-TYPE" "OC90 WILD-TYPE" 
    TCGA-55-1592     TCGA-55-1594     TCGA-55-1595     TCGA-55-1596 
"OC90 WILD-TYPE" "OC90 WILD-TYPE"   "OC90 MUTATED" "OC90 WILD-TYPE" 
    TCGA-55-5899     TCGA-55-6543     TCGA-55-6642     TCGA-55-6712 
"OC90 WILD-TYPE" "OC90 WILD-TYPE" "OC90 WILD-TYPE" "OC90 WILD-TYPE" 
    TCGA-64-1676     TCGA-64-1677     TCGA-64-1678     TCGA-64-1680 
"OC90 WILD-TYPE" "OC90 WILD-TYPE" "OC90 WILD-TYPE" "OC90 WILD-TYPE" 
    TCGA-64-5774     TCGA-64-5775     TCGA-64-5778     TCGA-64-5779 
"OC90 WILD-TYPE" "OC90 WILD-TYPE" "OC90 WILD-TYPE" "OC90 WILD-TYPE" 
    TCGA-64-5781     TCGA-64-5815     TCGA-67-3770     TCGA-67-3771 
"OC90 WILD-TYPE" "OC90 WILD-TYPE" "OC90 WILD-TYPE" "OC90 WILD-TYPE" 
    TCGA-67-3772     TCGA-67-3773     TCGA-67-3774     TCGA-67-6215 
"OC90 WILD-TYPE" "OC90 WILD-TYPE" "OC90 WILD-TYPE" "OC90 WILD-TYPE" 
    TCGA-67-6216     TCGA-67-6217     TCGA-71-6725     TCGA-73-4658 
"OC90 WILD-TYPE" "OC90 WILD-TYPE" "OC90 WILD-TYPE" "OC90 WILD-TYPE" 
    TCGA-73-4659     TCGA-73-4662     TCGA-73-4666     TCGA-73-4668 
"OC90 WILD-TYPE" "OC90 WILD-TYPE" "OC90 WILD-TYPE" "OC90 WILD-TYPE" 
    TCGA-73-4670     TCGA-73-4675     TCGA-73-4676     TCGA-73-4677 
"OC90 WILD-TYPE" "OC90 WILD-TYPE" "OC90 WILD-TYPE"   "OC90 MUTATED" 
    TCGA-91-6828     TCGA-91-6829     TCGA-91-6831     TCGA-91-6835 
"OC90 WILD-TYPE"   "OC90 MUTATED" "OC90 WILD-TYPE" "OC90 WILD-TYPE" 
    TCGA-91-6836 
"OC90 WILD-TYPE" 
    TCGA-05-4249     TCGA-05-4250     TCGA-05-4382     TCGA-05-4384 
"OC90 WILD-TYPE" "OC90 WILD-TYPE" "OC90 WILD-TYPE" "OC90 WILD-TYPE" 
    TCGA-05-4390     TCGA-05-4396     TCGA-05-4397     TCGA-05-4398 
"OC90 WILD-TYPE" "OC90 WILD-TYPE" "OC90 WILD-TYPE" "OC90 WILD-TYPE" 
    TCGA-05-4402     TCGA-05-4405     TCGA-05-4415     TCGA-05-4417 
"OC90 WILD-TYPE" "OC90 WILD-TYPE" "OC90 WILD-TYPE" "OC90 WILD-TYPE" 
    TCGA-05-4418     TCGA-05-4420     TCGA-05-4424     TCGA-05-4426 
"OC90 WILD-TYPE" "OC90 WILD-TYPE" "OC90 WILD-TYPE" "OC90 WILD-TYPE" 
    TCGA-05-4427     TCGA-05-4430     TCGA-05-4432     TCGA-05-4433 
"OC90 WILD-TYPE" "OC90 WILD-TYPE" "OC90 WILD-TYPE" "OC90 WILD-TYPE" 
    TCGA-05-4434     TCGA-05-5420     TCGA-05-5423     TCGA-05-5425 
"OC90 WILD-TYPE" "OC90 WILD-TYPE" "OC90 WILD-TYPE" "OC90 WILD-TYPE" 
    TCGA-05-5429     TCGA-05-5715     TCGA-35-3615     TCGA-35-4122 
"OC90 WILD-TYPE" "OC90 WILD-TYPE" "OC90 WILD-TYPE" "OC90 WILD-TYPE" 
    TCGA-35-4123     TCGA-35-5375     TCGA-38-4625     TCGA-38-4626 
"OC90 WILD-TYPE" "OC90 WILD-TYPE" "OC90 WILD-TYPE" "OC90 WILD-TYPE" 
    TCGA-38-4627     TCGA-38-4628     TCGA-38-4629     TCGA-38-4630 
"OC90 WILD-TYPE" "OC90 WILD-TYPE" "OC90 WILD-TYPE" "OC90 WILD-TYPE" 
    TCGA-38-4631     TCGA-38-4632     TCGA-38-6178     TCGA-44-2655 
"OC90 WILD-TYPE" "OC90 WILD-TYPE" "OC90 WILD-TYPE" "OC90 WILD-TYPE" 
    TCGA-44-2656     TCGA-44-2657     TCGA-44-2659     TCGA-44-2661 
"OC90 WILD-TYPE" "OC90 WILD-TYPE" "OC90 WILD-TYPE" "OC90 WILD-TYPE" 
    TCGA-44-2662     TCGA-44-2665     TCGA-44-2666     TCGA-44-2668 
"OC90 WILD-TYPE" "OC90 WILD-TYPE" "OC90 WILD-TYPE" "OC90 WILD-TYPE" 
    TCGA-44-3396     TCGA-44-3398     TCGA-44-3918     TCGA-44-3919 
"OC90 WILD-TYPE" "OC90 WILD-TYPE" "OC90 WILD-TYPE" "OC90 WILD-TYPE" 
    TCGA-44-4112     TCGA-44-5643     TCGA-44-5645     TCGA-44-6144 
"OC90 WILD-TYPE" "OC90 WILD-TYPE" "OC90 WILD-TYPE" "OC90 WILD-TYPE" 
    TCGA-44-6145     TCGA-44-6146     TCGA-44-6147     TCGA-44-6148 
"OC90 WILD-TYPE" "OC90 WILD-TYPE" "OC90 WILD-TYPE" "OC90 WILD-TYPE" 
    TCGA-44-6774     TCGA-44-6775     TCGA-44-6776     TCGA-44-6777 
"OC90 WILD-TYPE" "OC90 WILD-TYPE" "OC90 WILD-TYPE" "OC90 WILD-TYPE" 
    TCGA-44-6778     TCGA-44-6779     TCGA-49-4486     TCGA-49-4487 
"OC90 WILD-TYPE" "OC90 WILD-TYPE" "OC90 WILD-TYPE" "OC90 WILD-TYPE" 
    TCGA-49-4488     TCGA-49-4490     TCGA-49-4494     TCGA-49-4501 
"OC90 WILD-TYPE" "OC90 WILD-TYPE" "OC90 WILD-TYPE" "OC90 WILD-TYPE" 
    TCGA-49-4505     TCGA-49-4506     TCGA-49-4507     TCGA-49-4510 
"OC90 WILD-TYPE" "OC90 WILD-TYPE"   "OC90 MUTATED" "OC90 WILD-TYPE" 
    TCGA-49-4512     TCGA-49-4514     TCGA-49-6742     TCGA-49-6743 
"OC90 WILD-TYPE" "OC90 WILD-TYPE"   "OC90 MUTATED" "OC90 WILD-TYPE" 
    TCGA-49-6744     TCGA-49-6745     TCGA-50-5044     TCGA-50-5045 
"OC90 WILD-TYPE" "OC90 WILD-TYPE" "OC90 WILD-TYPE"   "OC90 MUTATED" 
    TCGA-50-5049     TCGA-50-5051     TCGA-50-5055     TCGA-50-5066 
  "OC90 MUTATED" "OC90 WILD-TYPE" "OC90 WILD-TYPE" "OC90 WILD-TYPE" 
    TCGA-50-5068     TCGA-50-5072     TCGA-50-5930     TCGA-50-5931 
"OC90 WILD-TYPE" "OC90 WILD-TYPE" "OC90 WILD-TYPE" "OC90 WILD-TYPE" 
    TCGA-50-5932     TCGA-50-5933     TCGA-50-5935     TCGA-50-5936 
"OC90 WILD-TYPE" "OC90 WILD-TYPE" "OC90 WILD-TYPE" "OC90 WILD-TYPE" 
    TCGA-50-5939     TCGA-50-5941     TCGA-50-5942     TCGA-50-5944 
"OC90 WILD-TYPE" "OC90 WILD-TYPE" "OC90 WILD-TYPE" "OC90 WILD-TYPE" 
    TCGA-50-5946     TCGA-50-6590     TCGA-50-6591     TCGA-50-6592 
"OC90 WILD-TYPE" "OC90 WILD-TYPE" "OC90 WILD-TYPE" "OC90 WILD-TYPE" 
    TCGA-50-6593     TCGA-50-6594     TCGA-50-6595     TCGA-50-6597 
  "OC90 MUTATED" "OC90 WILD-TYPE" "OC90 WILD-TYPE" "OC90 WILD-TYPE" 
    TCGA-55-1592     TCGA-55-1594     TCGA-55-1595     TCGA-55-1596 
"OC90 WILD-TYPE" "OC90 WILD-TYPE"   "OC90 MUTATED" "OC90 WILD-TYPE" 
    TCGA-55-5899     TCGA-55-6543     TCGA-55-6642     TCGA-55-6712 
"OC90 WILD-TYPE" "OC90 WILD-TYPE" "OC90 WILD-TYPE" "OC90 WILD-TYPE" 
    TCGA-64-1676     TCGA-64-1677     TCGA-64-1678     TCGA-64-1680 
"OC90 WILD-TYPE" "OC90 WILD-TYPE" "OC90 WILD-TYPE" "OC90 WILD-TYPE" 
    TCGA-64-5774     TCGA-64-5775     TCGA-64-5778     TCGA-64-5779 
"OC90 WILD-TYPE" "OC90 WILD-TYPE" "OC90 WILD-TYPE" "OC90 WILD-TYPE" 
    TCGA-64-5781     TCGA-64-5815     TCGA-67-3770     TCGA-67-3771 
"OC90 WILD-TYPE" "OC90 WILD-TYPE" "OC90 WILD-TYPE" "OC90 WILD-TYPE" 
    TCGA-67-3772     TCGA-67-3773     TCGA-67-3774     TCGA-67-6215 
"OC90 WILD-TYPE" "OC90 WILD-TYPE" "OC90 WILD-TYPE" "OC90 WILD-TYPE" 
    TCGA-67-6216     TCGA-67-6217     TCGA-71-6725     TCGA-73-4658 
"OC90 WILD-TYPE" "OC90 WILD-TYPE" "OC90 WILD-TYPE" "OC90 WILD-TYPE" 
    TCGA-73-4659     TCGA-73-4662     TCGA-73-4666     TCGA-73-4668 
"OC90 WILD-TYPE" "OC90 WILD-TYPE" "OC90 WILD-TYPE" "OC90 WILD-TYPE" 
    TCGA-73-4670     TCGA-73-4675     TCGA-73-4676     TCGA-73-4677 
"OC90 WILD-TYPE" "OC90 WILD-TYPE" "OC90 WILD-TYPE"   "OC90 MUTATED" 
    TCGA-91-6828     TCGA-91-6829     TCGA-91-6831     TCGA-91-6835 
"OC90 WILD-TYPE"   "OC90 MUTATED" "OC90 WILD-TYPE" "OC90 WILD-TYPE" 
    TCGA-91-6836 
"OC90 WILD-TYPE" 
[1] "hr=" "1.1"
D261V2, continuous
D261V3, binary
[1] "tbl2"
                cls
clus             [,1] [,2]
  OC90 MUTATED      4    5
  OC90 WILD-TYPE   89   74
        clus
vv       OC90 MUTATED OC90 WILD-TYPE
  FEMALE            4             89
  MALE              5             74
D261V4, continuous
D261V5, multiclass
D261V6, multiclass
    clus
vv   OC90 MUTATED OC90 WILD-TYPE
  T1            2             39
  T2            6            102
  T3            1             13
  T4            0              8
D261V7, multiclass
       clus
vv      OC90 MUTATED OC90 WILD-TYPE
  N0               5             90
  N1               3             34
  N2+N3            1             34
D261V8, multiclass
    clus
vv   OC90 MUTATED OC90 WILD-TYPE
  M0            7            130
  M1            0              9
  MX            2             20
D261V9, multiclass
     clus
vv    OC90 MUTATED OC90 WILD-TYPE
  I              6             82
  II             1             32
  III            2             37
  IV             0              9
D261V10, binary
[1] "tbl2"
                cls
clus             [,1] [,2]
  OC90 MUTATED      3    6
  OC90 WILD-TYPE   13  150
     clus
vv    OC90 MUTATED OC90 WILD-TYPE
  NO             3             13
  YES            6            150
D261V11, continuous
D261V12, continuous
D261V13, multiclass
                                             clus
vv                                            OC90 MUTATED OC90 WILD-TYPE
  CURRENT REFORMED SMOKER FOR < OR = 15 YEARS            5             57
  CURRENT REFORMED SMOKER FOR > 15 YEARS                 2             44
  CURRENT SMOKER                                         0             28
  LIFELONG NON-SMOKER                                    0             24
D261V14, continuous
[1] "Remove cluster labels:" "OC90 MUTATED"          
clus
  OC90 MUTATED OC90 WILD-TYPE 
             2             66 
    TCGA-05-4384     TCGA-05-4390     TCGA-05-4396     TCGA-05-4405 
"OC90 WILD-TYPE" "OC90 WILD-TYPE" "OC90 WILD-TYPE" "OC90 WILD-TYPE" 
    TCGA-05-4410     TCGA-05-4415     TCGA-05-4417     TCGA-05-4424 
"OC90 WILD-TYPE" "OC90 WILD-TYPE" "OC90 WILD-TYPE" "OC90 WILD-TYPE" 
    TCGA-05-4427     TCGA-05-4433     TCGA-05-5420     TCGA-05-5423 
"OC90 WILD-TYPE" "OC90 WILD-TYPE" "OC90 WILD-TYPE" "OC90 WILD-TYPE" 
    TCGA-05-5425     TCGA-05-5428     TCGA-35-4122     TCGA-35-4123 
"OC90 WILD-TYPE" "OC90 WILD-TYPE" "OC90 WILD-TYPE" "OC90 WILD-TYPE" 
    TCGA-35-5375     TCGA-38-4625     TCGA-38-4626     TCGA-44-2655 
"OC90 WILD-TYPE" "OC90 WILD-TYPE" "OC90 WILD-TYPE" "OC90 WILD-TYPE" 
    TCGA-44-2656     TCGA-44-2657     TCGA-44-2659     TCGA-44-2662 
"OC90 WILD-TYPE" "OC90 WILD-TYPE" "OC90 WILD-TYPE" "OC90 WILD-TYPE" 
    TCGA-44-2666     TCGA-44-2668     TCGA-44-3396     TCGA-44-3398 
"OC90 WILD-TYPE" "OC90 WILD-TYPE" "OC90 WILD-TYPE" "OC90 WILD-TYPE" 
    TCGA-44-3918     TCGA-44-4112     TCGA-44-5645     TCGA-44-6144 
"OC90 WILD-TYPE" "OC90 WILD-TYPE" "OC90 WILD-TYPE" "OC90 WILD-TYPE" 
    TCGA-44-6145     TCGA-44-6147     TCGA-44-6148     TCGA-44-6774 
"OC90 WILD-TYPE" "OC90 WILD-TYPE" "OC90 WILD-TYPE" "OC90 WILD-TYPE" 
    TCGA-44-6775     TCGA-44-6776     TCGA-44-6777     TCGA-44-6778 
"OC90 WILD-TYPE" "OC90 WILD-TYPE" "OC90 WILD-TYPE" "OC90 WILD-TYPE" 
    TCGA-44-6779     TCGA-49-4486     TCGA-49-4494     TCGA-49-4505 
"OC90 WILD-TYPE" "OC90 WILD-TYPE" "OC90 WILD-TYPE" "OC90 WILD-TYPE" 
    TCGA-55-1592     TCGA-55-1594     TCGA-55-1596     TCGA-55-5899 
"OC90 WILD-TYPE" "OC90 WILD-TYPE" "OC90 WILD-TYPE" "OC90 WILD-TYPE" 
    TCGA-55-6642     TCGA-55-6712     TCGA-64-1677     TCGA-64-1678 
"OC90 WILD-TYPE" "OC90 WILD-TYPE" "OC90 WILD-TYPE" "OC90 WILD-TYPE" 
    TCGA-64-1680     TCGA-64-5774     TCGA-64-5775     TCGA-64-5778 
"OC90 WILD-TYPE" "OC90 WILD-TYPE" "OC90 WILD-TYPE" "OC90 WILD-TYPE" 
    TCGA-64-5779     TCGA-64-5781     TCGA-73-4659     TCGA-73-4662 
"OC90 WILD-TYPE" "OC90 WILD-TYPE" "OC90 WILD-TYPE" "OC90 WILD-TYPE" 
    TCGA-73-4666     TCGA-73-4668     TCGA-73-4670     TCGA-73-4675 
"OC90 WILD-TYPE" "OC90 WILD-TYPE" "OC90 WILD-TYPE" "OC90 WILD-TYPE" 
    TCGA-73-4676     TCGA-91-6836 
"OC90 WILD-TYPE" "OC90 WILD-TYPE" 

Clustering(262) Variable = MS4A14 MUTATION ANALYSIS
D262V1, survival
                  sevent
clus2               0  1
  MS4A14 MUTATED    5  2
  MS4A14 WILD-TYPE 94 48
  MS4A14 MUTATED MS4A14 WILD-TYPE 
               7              142 
  MS4A14 MUTATED MS4A14 WILD-TYPE 
               2               48 
$`MS4A14 MUTATED`
TCGA-05-4424 TCGA-44-3918 TCGA-49-4490 TCGA-49-4505 TCGA-64-5779 TCGA-64-5781 
       30.02         6.44        12.66        14.07        16.67        39.52 
TCGA-91-6828 
        1.22 

$`MS4A14 WILD-TYPE`
TCGA-05-4249 TCGA-05-4250 TCGA-05-4382 TCGA-05-4384 TCGA-05-4390 TCGA-05-4396 
       38.07         3.98        19.92        14.01        37.02         9.96 
TCGA-05-4397 TCGA-05-4398 TCGA-05-4402 TCGA-05-4405 TCGA-05-4415 TCGA-05-4417 
       24.03        47.05         8.02        20.05         2.96        14.93 
TCGA-05-4418 TCGA-05-4420 TCGA-05-4426 TCGA-05-4427 TCGA-05-4430 TCGA-05-4432 
        8.98        29.95        26.01        26.01        25.02        25.02 
TCGA-05-4433 TCGA-05-4434 TCGA-05-5420 TCGA-05-5423 TCGA-05-5425 TCGA-05-5429 
       24.00        15.02         1.02         4.96         2.96         0.99 
TCGA-05-5715 TCGA-35-3615 TCGA-35-4122 TCGA-35-4123 TCGA-35-5375 TCGA-38-4625 
        2.04         0.46         7.36         5.95         8.68        47.61 
TCGA-38-4626 TCGA-38-4627 TCGA-38-4628 TCGA-38-4629 TCGA-38-4630 TCGA-38-4631 
       85.32        37.71        49.02        28.37        35.28        11.64 
TCGA-38-4632 TCGA-38-6178 TCGA-44-2655 TCGA-44-2656 TCGA-44-2657 TCGA-44-2659 
       44.61         5.19        18.87        19.10        13.15        17.39 
TCGA-44-2661 TCGA-44-2662 TCGA-44-2665 TCGA-44-2666 TCGA-44-2668 TCGA-44-3396 
        3.39        15.78        13.15         3.19         8.09        10.22 
TCGA-44-3398 TCGA-44-3919 TCGA-44-4112 TCGA-44-5643 TCGA-44-5645 TCGA-44-6144 
        8.32         6.21         4.60         3.48         6.84         0.30 
TCGA-44-6145 TCGA-44-6146 TCGA-44-6147 TCGA-44-6148 TCGA-44-6774 TCGA-44-6775 
        3.35         9.93         7.76         3.12         5.42         2.70 
TCGA-44-6776 TCGA-44-6777 TCGA-44-6778 TCGA-44-6779 TCGA-49-4486 TCGA-49-4487 
       63.72        32.45        36.49        16.41        76.21        28.11 
TCGA-49-4488 TCGA-49-4494 TCGA-49-4501 TCGA-49-4506 TCGA-49-4507 TCGA-49-4510 
       28.57        35.54        46.72        32.84         8.81        29.46 
TCGA-49-4512 TCGA-49-4514 TCGA-49-6742 TCGA-49-6743 TCGA-49-6744 TCGA-49-6745 
       29.75        43.20        15.02        12.13        12.99         4.93 
TCGA-50-5044 TCGA-50-5045 TCGA-50-5049 TCGA-50-5051 TCGA-50-5055 TCGA-50-5066 
       20.48        71.47        48.82        14.96        25.81         9.76 
TCGA-50-5068 TCGA-50-5072 TCGA-50-5930 TCGA-50-5931 TCGA-50-5932 TCGA-50-5933 
       49.28         8.05         9.27         8.78        35.87        77.88 
TCGA-50-5935 TCGA-50-5936 TCGA-50-5939 TCGA-50-5941 TCGA-50-5942 TCGA-50-5944 
       21.47         8.45        15.12         9.37         4.44        12.26 
TCGA-50-5946 TCGA-50-6590 TCGA-50-6591 TCGA-50-6592 TCGA-50-6593 TCGA-50-6594 
       11.47        42.31         3.88        25.51        11.05        12.16 
TCGA-50-6595 TCGA-50-6597 TCGA-55-1592 TCGA-55-1594 TCGA-55-1595 TCGA-55-1596 
        6.21        33.37        23.05        38.73        48.62        45.17 
TCGA-55-5899 TCGA-55-6543 TCGA-55-6642 TCGA-55-6712 TCGA-64-1676 TCGA-64-1677 
        2.86         0.07        32.61         0.79        56.81        20.65 
TCGA-64-1678 TCGA-64-1680 TCGA-64-5774 TCGA-64-5775 TCGA-64-5778 TCGA-64-5815 
       39.09        37.02        83.84         0.10        30.44         7.33 
TCGA-67-3770 TCGA-67-3771 TCGA-67-3772 TCGA-67-3773 TCGA-67-3774 TCGA-67-6215 
        0.99         1.97         0.59         2.04         0.59         0.89 
TCGA-67-6216 TCGA-67-6217 TCGA-71-6725 TCGA-73-4658 TCGA-73-4659 TCGA-73-4662 
        0.69        13.87         2.01        52.57        23.38        29.95 
TCGA-73-4666 TCGA-73-4668 TCGA-73-4670 TCGA-73-4675 TCGA-73-4676 TCGA-73-4677 
       20.28        15.35         0.46         1.32         4.01         1.25 
TCGA-91-6829 TCGA-91-6831 TCGA-91-6835 TCGA-91-6836 
       41.33         1.28         1.15         0.36 

  MS4A14 MUTATED MS4A14 WILD-TYPE 
            1.22             0.07 
  MS4A14 MUTATED MS4A14 WILD-TYPE 
           39.52            85.32 
  MS4A14 MUTATED MS4A14 WILD-TYPE 
           14.07            13.51 
[1] "1.2 - 39.5 (14.1)" "0.1 - 85.3 (13.5)"
      TCGA-05-4249       TCGA-05-4250       TCGA-05-4382       TCGA-05-4384 
"MS4A14 WILD-TYPE" "MS4A14 WILD-TYPE" "MS4A14 WILD-TYPE" "MS4A14 WILD-TYPE" 
      TCGA-05-4390       TCGA-05-4396       TCGA-05-4397       TCGA-05-4398 
"MS4A14 WILD-TYPE" "MS4A14 WILD-TYPE" "MS4A14 WILD-TYPE" "MS4A14 WILD-TYPE" 
      TCGA-05-4402       TCGA-05-4405       TCGA-05-4415       TCGA-05-4417 
"MS4A14 WILD-TYPE" "MS4A14 WILD-TYPE" "MS4A14 WILD-TYPE" "MS4A14 WILD-TYPE" 
      TCGA-05-4418       TCGA-05-4420       TCGA-05-4424       TCGA-05-4426 
"MS4A14 WILD-TYPE" "MS4A14 WILD-TYPE"   "MS4A14 MUTATED" "MS4A14 WILD-TYPE" 
      TCGA-05-4427       TCGA-05-4430       TCGA-05-4432       TCGA-05-4433 
"MS4A14 WILD-TYPE" "MS4A14 WILD-TYPE" "MS4A14 WILD-TYPE" "MS4A14 WILD-TYPE" 
      TCGA-05-4434       TCGA-05-5420       TCGA-05-5423       TCGA-05-5425 
"MS4A14 WILD-TYPE" "MS4A14 WILD-TYPE" "MS4A14 WILD-TYPE" "MS4A14 WILD-TYPE" 
      TCGA-05-5429       TCGA-05-5715       TCGA-35-3615       TCGA-35-4122 
"MS4A14 WILD-TYPE" "MS4A14 WILD-TYPE" "MS4A14 WILD-TYPE" "MS4A14 WILD-TYPE" 
      TCGA-35-4123       TCGA-35-5375       TCGA-38-4625       TCGA-38-4626 
"MS4A14 WILD-TYPE" "MS4A14 WILD-TYPE" "MS4A14 WILD-TYPE" "MS4A14 WILD-TYPE" 
      TCGA-38-4627       TCGA-38-4628       TCGA-38-4629       TCGA-38-4630 
"MS4A14 WILD-TYPE" "MS4A14 WILD-TYPE" "MS4A14 WILD-TYPE" "MS4A14 WILD-TYPE" 
      TCGA-38-4631       TCGA-38-4632       TCGA-38-6178       TCGA-44-2655 
"MS4A14 WILD-TYPE" "MS4A14 WILD-TYPE" "MS4A14 WILD-TYPE" "MS4A14 WILD-TYPE" 
      TCGA-44-2656       TCGA-44-2657       TCGA-44-2659       TCGA-44-2661 
"MS4A14 WILD-TYPE" "MS4A14 WILD-TYPE" "MS4A14 WILD-TYPE" "MS4A14 WILD-TYPE" 
      TCGA-44-2662       TCGA-44-2665       TCGA-44-2666       TCGA-44-2668 
"MS4A14 WILD-TYPE" "MS4A14 WILD-TYPE" "MS4A14 WILD-TYPE" "MS4A14 WILD-TYPE" 
      TCGA-44-3396       TCGA-44-3398       TCGA-44-3918       TCGA-44-3919 
"MS4A14 WILD-TYPE" "MS4A14 WILD-TYPE"   "MS4A14 MUTATED" "MS4A14 WILD-TYPE" 
      TCGA-44-4112       TCGA-44-5643       TCGA-44-5645       TCGA-44-6144 
"MS4A14 WILD-TYPE" "MS4A14 WILD-TYPE" "MS4A14 WILD-TYPE" "MS4A14 WILD-TYPE" 
      TCGA-44-6145       TCGA-44-6146       TCGA-44-6147       TCGA-44-6148 
"MS4A14 WILD-TYPE" "MS4A14 WILD-TYPE" "MS4A14 WILD-TYPE" "MS4A14 WILD-TYPE" 
      TCGA-44-6774       TCGA-44-6775       TCGA-44-6776       TCGA-44-6777 
"MS4A14 WILD-TYPE" "MS4A14 WILD-TYPE" "MS4A14 WILD-TYPE" "MS4A14 WILD-TYPE" 
      TCGA-44-6778       TCGA-44-6779       TCGA-49-4486       TCGA-49-4487 
"MS4A14 WILD-TYPE" "MS4A14 WILD-TYPE" "MS4A14 WILD-TYPE" "MS4A14 WILD-TYPE" 
      TCGA-49-4488       TCGA-49-4490       TCGA-49-4494       TCGA-49-4501 
"MS4A14 WILD-TYPE"   "MS4A14 MUTATED" "MS4A14 WILD-TYPE" "MS4A14 WILD-TYPE" 
      TCGA-49-4505       TCGA-49-4506       TCGA-49-4507       TCGA-49-4510 
  "MS4A14 MUTATED" "MS4A14 WILD-TYPE" "MS4A14 WILD-TYPE" "MS4A14 WILD-TYPE" 
      TCGA-49-4512       TCGA-49-4514       TCGA-49-6742       TCGA-49-6743 
"MS4A14 WILD-TYPE" "MS4A14 WILD-TYPE" "MS4A14 WILD-TYPE" "MS4A14 WILD-TYPE" 
      TCGA-49-6744       TCGA-49-6745       TCGA-50-5044       TCGA-50-5045 
"MS4A14 WILD-TYPE" "MS4A14 WILD-TYPE" "MS4A14 WILD-TYPE" "MS4A14 WILD-TYPE" 
      TCGA-50-5049       TCGA-50-5051       TCGA-50-5055       TCGA-50-5066 
"MS4A14 WILD-TYPE" "MS4A14 WILD-TYPE" "MS4A14 WILD-TYPE" "MS4A14 WILD-TYPE" 
      TCGA-50-5068       TCGA-50-5072       TCGA-50-5930       TCGA-50-5931 
"MS4A14 WILD-TYPE" "MS4A14 WILD-TYPE" "MS4A14 WILD-TYPE" "MS4A14 WILD-TYPE" 
      TCGA-50-5932       TCGA-50-5933       TCGA-50-5935       TCGA-50-5936 
"MS4A14 WILD-TYPE" "MS4A14 WILD-TYPE" "MS4A14 WILD-TYPE" "MS4A14 WILD-TYPE" 
      TCGA-50-5939       TCGA-50-5941       TCGA-50-5942       TCGA-50-5944 
"MS4A14 WILD-TYPE" "MS4A14 WILD-TYPE" "MS4A14 WILD-TYPE" "MS4A14 WILD-TYPE" 
      TCGA-50-5946       TCGA-50-6590       TCGA-50-6591       TCGA-50-6592 
"MS4A14 WILD-TYPE" "MS4A14 WILD-TYPE" "MS4A14 WILD-TYPE" "MS4A14 WILD-TYPE" 
      TCGA-50-6593       TCGA-50-6594       TCGA-50-6595       TCGA-50-6597 
"MS4A14 WILD-TYPE" "MS4A14 WILD-TYPE" "MS4A14 WILD-TYPE" "MS4A14 WILD-TYPE" 
      TCGA-55-1592       TCGA-55-1594       TCGA-55-1595       TCGA-55-1596 
"MS4A14 WILD-TYPE" "MS4A14 WILD-TYPE" "MS4A14 WILD-TYPE" "MS4A14 WILD-TYPE" 
      TCGA-55-5899       TCGA-55-6543       TCGA-55-6642       TCGA-55-6712 
"MS4A14 WILD-TYPE" "MS4A14 WILD-TYPE" "MS4A14 WILD-TYPE" "MS4A14 WILD-TYPE" 
      TCGA-64-1676       TCGA-64-1677       TCGA-64-1678       TCGA-64-1680 
"MS4A14 WILD-TYPE" "MS4A14 WILD-TYPE" "MS4A14 WILD-TYPE" "MS4A14 WILD-TYPE" 
      TCGA-64-5774       TCGA-64-5775       TCGA-64-5778       TCGA-64-5779 
"MS4A14 WILD-TYPE" "MS4A14 WILD-TYPE" "MS4A14 WILD-TYPE"   "MS4A14 MUTATED" 
      TCGA-64-5781       TCGA-64-5815       TCGA-67-3770       TCGA-67-3771 
  "MS4A14 MUTATED" "MS4A14 WILD-TYPE" "MS4A14 WILD-TYPE" "MS4A14 WILD-TYPE" 
      TCGA-67-3772       TCGA-67-3773       TCGA-67-3774       TCGA-67-6215 
"MS4A14 WILD-TYPE" "MS4A14 WILD-TYPE" "MS4A14 WILD-TYPE" "MS4A14 WILD-TYPE" 
      TCGA-67-6216       TCGA-67-6217       TCGA-71-6725       TCGA-73-4658 
"MS4A14 WILD-TYPE" "MS4A14 WILD-TYPE" "MS4A14 WILD-TYPE" "MS4A14 WILD-TYPE" 
      TCGA-73-4659       TCGA-73-4662       TCGA-73-4666       TCGA-73-4668 
"MS4A14 WILD-TYPE" "MS4A14 WILD-TYPE" "MS4A14 WILD-TYPE" "MS4A14 WILD-TYPE" 
      TCGA-73-4670       TCGA-73-4675       TCGA-73-4676       TCGA-73-4677 
"MS4A14 WILD-TYPE" "MS4A14 WILD-TYPE" "MS4A14 WILD-TYPE" "MS4A14 WILD-TYPE" 
      TCGA-91-6828       TCGA-91-6829       TCGA-91-6831       TCGA-91-6835 
  "MS4A14 MUTATED" "MS4A14 WILD-TYPE" "MS4A14 WILD-TYPE" "MS4A14 WILD-TYPE" 
      TCGA-91-6836 
"MS4A14 WILD-TYPE" 
      TCGA-05-4249       TCGA-05-4250       TCGA-05-4382       TCGA-05-4384 
"MS4A14 WILD-TYPE" "MS4A14 WILD-TYPE" "MS4A14 WILD-TYPE" "MS4A14 WILD-TYPE" 
      TCGA-05-4390       TCGA-05-4396       TCGA-05-4397       TCGA-05-4398 
"MS4A14 WILD-TYPE" "MS4A14 WILD-TYPE" "MS4A14 WILD-TYPE" "MS4A14 WILD-TYPE" 
      TCGA-05-4402       TCGA-05-4405       TCGA-05-4415       TCGA-05-4417 
"MS4A14 WILD-TYPE" "MS4A14 WILD-TYPE" "MS4A14 WILD-TYPE" "MS4A14 WILD-TYPE" 
      TCGA-05-4418       TCGA-05-4420       TCGA-05-4424       TCGA-05-4426 
"MS4A14 WILD-TYPE" "MS4A14 WILD-TYPE"   "MS4A14 MUTATED" "MS4A14 WILD-TYPE" 
      TCGA-05-4427       TCGA-05-4430       TCGA-05-4432       TCGA-05-4433 
"MS4A14 WILD-TYPE" "MS4A14 WILD-TYPE" "MS4A14 WILD-TYPE" "MS4A14 WILD-TYPE" 
      TCGA-05-4434       TCGA-05-5420       TCGA-05-5423       TCGA-05-5425 
"MS4A14 WILD-TYPE" "MS4A14 WILD-TYPE" "MS4A14 WILD-TYPE" "MS4A14 WILD-TYPE" 
      TCGA-05-5429       TCGA-05-5715       TCGA-35-3615       TCGA-35-4122 
"MS4A14 WILD-TYPE" "MS4A14 WILD-TYPE" "MS4A14 WILD-TYPE" "MS4A14 WILD-TYPE" 
      TCGA-35-4123       TCGA-35-5375       TCGA-38-4625       TCGA-38-4626 
"MS4A14 WILD-TYPE" "MS4A14 WILD-TYPE" "MS4A14 WILD-TYPE" "MS4A14 WILD-TYPE" 
      TCGA-38-4627       TCGA-38-4628       TCGA-38-4629       TCGA-38-4630 
"MS4A14 WILD-TYPE" "MS4A14 WILD-TYPE" "MS4A14 WILD-TYPE" "MS4A14 WILD-TYPE" 
      TCGA-38-4631       TCGA-38-4632       TCGA-38-6178       TCGA-44-2655 
"MS4A14 WILD-TYPE" "MS4A14 WILD-TYPE" "MS4A14 WILD-TYPE" "MS4A14 WILD-TYPE" 
      TCGA-44-2656       TCGA-44-2657       TCGA-44-2659       TCGA-44-2661 
"MS4A14 WILD-TYPE" "MS4A14 WILD-TYPE" "MS4A14 WILD-TYPE" "MS4A14 WILD-TYPE" 
      TCGA-44-2662       TCGA-44-2665       TCGA-44-2666       TCGA-44-2668 
"MS4A14 WILD-TYPE" "MS4A14 WILD-TYPE" "MS4A14 WILD-TYPE" "MS4A14 WILD-TYPE" 
      TCGA-44-3396       TCGA-44-3398       TCGA-44-3918       TCGA-44-3919 
"MS4A14 WILD-TYPE" "MS4A14 WILD-TYPE"   "MS4A14 MUTATED" "MS4A14 WILD-TYPE" 
      TCGA-44-4112       TCGA-44-5643       TCGA-44-5645       TCGA-44-6144 
"MS4A14 WILD-TYPE" "MS4A14 WILD-TYPE" "MS4A14 WILD-TYPE" "MS4A14 WILD-TYPE" 
      TCGA-44-6145       TCGA-44-6146       TCGA-44-6147       TCGA-44-6148 
"MS4A14 WILD-TYPE" "MS4A14 WILD-TYPE" "MS4A14 WILD-TYPE" "MS4A14 WILD-TYPE" 
      TCGA-44-6774       TCGA-44-6775       TCGA-44-6776       TCGA-44-6777 
"MS4A14 WILD-TYPE" "MS4A14 WILD-TYPE" "MS4A14 WILD-TYPE" "MS4A14 WILD-TYPE" 
      TCGA-44-6778       TCGA-44-6779       TCGA-49-4486       TCGA-49-4487 
"MS4A14 WILD-TYPE" "MS4A14 WILD-TYPE" "MS4A14 WILD-TYPE" "MS4A14 WILD-TYPE" 
      TCGA-49-4488       TCGA-49-4490       TCGA-49-4494       TCGA-49-4501 
"MS4A14 WILD-TYPE"   "MS4A14 MUTATED" "MS4A14 WILD-TYPE" "MS4A14 WILD-TYPE" 
      TCGA-49-4505       TCGA-49-4506       TCGA-49-4507       TCGA-49-4510 
  "MS4A14 MUTATED" "MS4A14 WILD-TYPE" "MS4A14 WILD-TYPE" "MS4A14 WILD-TYPE" 
      TCGA-49-4512       TCGA-49-4514       TCGA-49-6742       TCGA-49-6743 
"MS4A14 WILD-TYPE" "MS4A14 WILD-TYPE" "MS4A14 WILD-TYPE" "MS4A14 WILD-TYPE" 
      TCGA-49-6744       TCGA-49-6745       TCGA-50-5044       TCGA-50-5045 
"MS4A14 WILD-TYPE" "MS4A14 WILD-TYPE" "MS4A14 WILD-TYPE" "MS4A14 WILD-TYPE" 
      TCGA-50-5049       TCGA-50-5051       TCGA-50-5055       TCGA-50-5066 
"MS4A14 WILD-TYPE" "MS4A14 WILD-TYPE" "MS4A14 WILD-TYPE" "MS4A14 WILD-TYPE" 
      TCGA-50-5068       TCGA-50-5072       TCGA-50-5930       TCGA-50-5931 
"MS4A14 WILD-TYPE" "MS4A14 WILD-TYPE" "MS4A14 WILD-TYPE" "MS4A14 WILD-TYPE" 
      TCGA-50-5932       TCGA-50-5933       TCGA-50-5935       TCGA-50-5936 
"MS4A14 WILD-TYPE" "MS4A14 WILD-TYPE" "MS4A14 WILD-TYPE" "MS4A14 WILD-TYPE" 
      TCGA-50-5939       TCGA-50-5941       TCGA-50-5942       TCGA-50-5944 
"MS4A14 WILD-TYPE" "MS4A14 WILD-TYPE" "MS4A14 WILD-TYPE" "MS4A14 WILD-TYPE" 
      TCGA-50-5946       TCGA-50-6590       TCGA-50-6591       TCGA-50-6592 
"MS4A14 WILD-TYPE" "MS4A14 WILD-TYPE" "MS4A14 WILD-TYPE" "MS4A14 WILD-TYPE" 
      TCGA-50-6593       TCGA-50-6594       TCGA-50-6595       TCGA-50-6597 
"MS4A14 WILD-TYPE" "MS4A14 WILD-TYPE" "MS4A14 WILD-TYPE" "MS4A14 WILD-TYPE" 
      TCGA-55-1592       TCGA-55-1594       TCGA-55-1595       TCGA-55-1596 
"MS4A14 WILD-TYPE" "MS4A14 WILD-TYPE" "MS4A14 WILD-TYPE" "MS4A14 WILD-TYPE" 
      TCGA-55-5899       TCGA-55-6543       TCGA-55-6642       TCGA-55-6712 
"MS4A14 WILD-TYPE" "MS4A14 WILD-TYPE" "MS4A14 WILD-TYPE" "MS4A14 WILD-TYPE" 
      TCGA-64-1676       TCGA-64-1677       TCGA-64-1678       TCGA-64-1680 
"MS4A14 WILD-TYPE" "MS4A14 WILD-TYPE" "MS4A14 WILD-TYPE" "MS4A14 WILD-TYPE" 
      TCGA-64-5774       TCGA-64-5775       TCGA-64-5778       TCGA-64-5779 
"MS4A14 WILD-TYPE" "MS4A14 WILD-TYPE" "MS4A14 WILD-TYPE"   "MS4A14 MUTATED" 
      TCGA-64-5781       TCGA-64-5815       TCGA-67-3770       TCGA-67-3771 
  "MS4A14 MUTATED" "MS4A14 WILD-TYPE" "MS4A14 WILD-TYPE" "MS4A14 WILD-TYPE" 
      TCGA-67-3772       TCGA-67-3773       TCGA-67-3774       TCGA-67-6215 
"MS4A14 WILD-TYPE" "MS4A14 WILD-TYPE" "MS4A14 WILD-TYPE" "MS4A14 WILD-TYPE" 
      TCGA-67-6216       TCGA-67-6217       TCGA-71-6725       TCGA-73-4658 
"MS4A14 WILD-TYPE" "MS4A14 WILD-TYPE" "MS4A14 WILD-TYPE" "MS4A14 WILD-TYPE" 
      TCGA-73-4659       TCGA-73-4662       TCGA-73-4666       TCGA-73-4668 
"MS4A14 WILD-TYPE" "MS4A14 WILD-TYPE" "MS4A14 WILD-TYPE" "MS4A14 WILD-TYPE" 
      TCGA-73-4670       TCGA-73-4675       TCGA-73-4676       TCGA-73-4677 
"MS4A14 WILD-TYPE" "MS4A14 WILD-TYPE" "MS4A14 WILD-TYPE" "MS4A14 WILD-TYPE" 
      TCGA-91-6828       TCGA-91-6829       TCGA-91-6831       TCGA-91-6835 
  "MS4A14 MUTATED" "MS4A14 WILD-TYPE" "MS4A14 WILD-TYPE" "MS4A14 WILD-TYPE" 
      TCGA-91-6836 
"MS4A14 WILD-TYPE" 
      TCGA-05-4249       TCGA-05-4250       TCGA-05-4382       TCGA-05-4384 
"MS4A14 WILD-TYPE" "MS4A14 WILD-TYPE" "MS4A14 WILD-TYPE" "MS4A14 WILD-TYPE" 
      TCGA-05-4390       TCGA-05-4396       TCGA-05-4397       TCGA-05-4398 
"MS4A14 WILD-TYPE" "MS4A14 WILD-TYPE" "MS4A14 WILD-TYPE" "MS4A14 WILD-TYPE" 
      TCGA-05-4402       TCGA-05-4405       TCGA-05-4415       TCGA-05-4417 
"MS4A14 WILD-TYPE" "MS4A14 WILD-TYPE" "MS4A14 WILD-TYPE" "MS4A14 WILD-TYPE" 
      TCGA-05-4418       TCGA-05-4420       TCGA-05-4424       TCGA-05-4426 
"MS4A14 WILD-TYPE" "MS4A14 WILD-TYPE"   "MS4A14 MUTATED" "MS4A14 WILD-TYPE" 
      TCGA-05-4427       TCGA-05-4430       TCGA-05-4432       TCGA-05-4433 
"MS4A14 WILD-TYPE" "MS4A14 WILD-TYPE" "MS4A14 WILD-TYPE" "MS4A14 WILD-TYPE" 
      TCGA-05-4434       TCGA-05-5420       TCGA-05-5423       TCGA-05-5425 
"MS4A14 WILD-TYPE" "MS4A14 WILD-TYPE" "MS4A14 WILD-TYPE" "MS4A14 WILD-TYPE" 
      TCGA-05-5429       TCGA-05-5715       TCGA-35-3615       TCGA-35-4122 
"MS4A14 WILD-TYPE" "MS4A14 WILD-TYPE" "MS4A14 WILD-TYPE" "MS4A14 WILD-TYPE" 
      TCGA-35-4123       TCGA-35-5375       TCGA-38-4625       TCGA-38-4626 
"MS4A14 WILD-TYPE" "MS4A14 WILD-TYPE" "MS4A14 WILD-TYPE" "MS4A14 WILD-TYPE" 
      TCGA-38-4627       TCGA-38-4628       TCGA-38-4629       TCGA-38-4630 
"MS4A14 WILD-TYPE" "MS4A14 WILD-TYPE" "MS4A14 WILD-TYPE" "MS4A14 WILD-TYPE" 
      TCGA-38-4631       TCGA-38-4632       TCGA-38-6178       TCGA-44-2655 
"MS4A14 WILD-TYPE" "MS4A14 WILD-TYPE" "MS4A14 WILD-TYPE" "MS4A14 WILD-TYPE" 
      TCGA-44-2656       TCGA-44-2657       TCGA-44-2659       TCGA-44-2661 
"MS4A14 WILD-TYPE" "MS4A14 WILD-TYPE" "MS4A14 WILD-TYPE" "MS4A14 WILD-TYPE" 
      TCGA-44-2662       TCGA-44-2665       TCGA-44-2666       TCGA-44-2668 
"MS4A14 WILD-TYPE" "MS4A14 WILD-TYPE" "MS4A14 WILD-TYPE" "MS4A14 WILD-TYPE" 
      TCGA-44-3396       TCGA-44-3398       TCGA-44-3918       TCGA-44-3919 
"MS4A14 WILD-TYPE" "MS4A14 WILD-TYPE"   "MS4A14 MUTATED" "MS4A14 WILD-TYPE" 
      TCGA-44-4112       TCGA-44-5643       TCGA-44-5645       TCGA-44-6144 
"MS4A14 WILD-TYPE" "MS4A14 WILD-TYPE" "MS4A14 WILD-TYPE" "MS4A14 WILD-TYPE" 
      TCGA-44-6145       TCGA-44-6146       TCGA-44-6147       TCGA-44-6148 
"MS4A14 WILD-TYPE" "MS4A14 WILD-TYPE" "MS4A14 WILD-TYPE" "MS4A14 WILD-TYPE" 
      TCGA-44-6774       TCGA-44-6775       TCGA-44-6776       TCGA-44-6777 
"MS4A14 WILD-TYPE" "MS4A14 WILD-TYPE" "MS4A14 WILD-TYPE" "MS4A14 WILD-TYPE" 
      TCGA-44-6778       TCGA-44-6779       TCGA-49-4486       TCGA-49-4487 
"MS4A14 WILD-TYPE" "MS4A14 WILD-TYPE" "MS4A14 WILD-TYPE" "MS4A14 WILD-TYPE" 
      TCGA-49-4488       TCGA-49-4490       TCGA-49-4494       TCGA-49-4501 
"MS4A14 WILD-TYPE"   "MS4A14 MUTATED" "MS4A14 WILD-TYPE" "MS4A14 WILD-TYPE" 
      TCGA-49-4505       TCGA-49-4506       TCGA-49-4507       TCGA-49-4510 
  "MS4A14 MUTATED" "MS4A14 WILD-TYPE" "MS4A14 WILD-TYPE" "MS4A14 WILD-TYPE" 
      TCGA-49-4512       TCGA-49-4514       TCGA-49-6742       TCGA-49-6743 
"MS4A14 WILD-TYPE" "MS4A14 WILD-TYPE" "MS4A14 WILD-TYPE" "MS4A14 WILD-TYPE" 
      TCGA-49-6744       TCGA-49-6745       TCGA-50-5044       TCGA-50-5045 
"MS4A14 WILD-TYPE" "MS4A14 WILD-TYPE" "MS4A14 WILD-TYPE" "MS4A14 WILD-TYPE" 
      TCGA-50-5049       TCGA-50-5051       TCGA-50-5055       TCGA-50-5066 
"MS4A14 WILD-TYPE" "MS4A14 WILD-TYPE" "MS4A14 WILD-TYPE" "MS4A14 WILD-TYPE" 
      TCGA-50-5068       TCGA-50-5072       TCGA-50-5930       TCGA-50-5931 
"MS4A14 WILD-TYPE" "MS4A14 WILD-TYPE" "MS4A14 WILD-TYPE" "MS4A14 WILD-TYPE" 
      TCGA-50-5932       TCGA-50-5933       TCGA-50-5935       TCGA-50-5936 
"MS4A14 WILD-TYPE" "MS4A14 WILD-TYPE" "MS4A14 WILD-TYPE" "MS4A14 WILD-TYPE" 
      TCGA-50-5939       TCGA-50-5941       TCGA-50-5942       TCGA-50-5944 
"MS4A14 WILD-TYPE" "MS4A14 WILD-TYPE" "MS4A14 WILD-TYPE" "MS4A14 WILD-TYPE" 
      TCGA-50-5946       TCGA-50-6590       TCGA-50-6591       TCGA-50-6592 
"MS4A14 WILD-TYPE" "MS4A14 WILD-TYPE" "MS4A14 WILD-TYPE" "MS4A14 WILD-TYPE" 
      TCGA-50-6593       TCGA-50-6594       TCGA-50-6595       TCGA-50-6597 
"MS4A14 WILD-TYPE" "MS4A14 WILD-TYPE" "MS4A14 WILD-TYPE" "MS4A14 WILD-TYPE" 
      TCGA-55-1592       TCGA-55-1594       TCGA-55-1595       TCGA-55-1596 
"MS4A14 WILD-TYPE" "MS4A14 WILD-TYPE" "MS4A14 WILD-TYPE" "MS4A14 WILD-TYPE" 
      TCGA-55-5899       TCGA-55-6543       TCGA-55-6642       TCGA-55-6712 
"MS4A14 WILD-TYPE" "MS4A14 WILD-TYPE" "MS4A14 WILD-TYPE" "MS4A14 WILD-TYPE" 
      TCGA-64-1676       TCGA-64-1677       TCGA-64-1678       TCGA-64-1680 
"MS4A14 WILD-TYPE" "MS4A14 WILD-TYPE" "MS4A14 WILD-TYPE" "MS4A14 WILD-TYPE" 
      TCGA-64-5774       TCGA-64-5775       TCGA-64-5778       TCGA-64-5779 
"MS4A14 WILD-TYPE" "MS4A14 WILD-TYPE" "MS4A14 WILD-TYPE"   "MS4A14 MUTATED" 
      TCGA-64-5781       TCGA-64-5815       TCGA-67-3770       TCGA-67-3771 
  "MS4A14 MUTATED" "MS4A14 WILD-TYPE" "MS4A14 WILD-TYPE" "MS4A14 WILD-TYPE" 
      TCGA-67-3772       TCGA-67-3773       TCGA-67-3774       TCGA-67-6215 
"MS4A14 WILD-TYPE" "MS4A14 WILD-TYPE" "MS4A14 WILD-TYPE" "MS4A14 WILD-TYPE" 
      TCGA-67-6216       TCGA-67-6217       TCGA-71-6725       TCGA-73-4658 
"MS4A14 WILD-TYPE" "MS4A14 WILD-TYPE" "MS4A14 WILD-TYPE" "MS4A14 WILD-TYPE" 
      TCGA-73-4659       TCGA-73-4662       TCGA-73-4666       TCGA-73-4668 
"MS4A14 WILD-TYPE" "MS4A14 WILD-TYPE" "MS4A14 WILD-TYPE" "MS4A14 WILD-TYPE" 
      TCGA-73-4670       TCGA-73-4675       TCGA-73-4676       TCGA-73-4677 
"MS4A14 WILD-TYPE" "MS4A14 WILD-TYPE" "MS4A14 WILD-TYPE" "MS4A14 WILD-TYPE" 
      TCGA-91-6828       TCGA-91-6829       TCGA-91-6831       TCGA-91-6835 
  "MS4A14 MUTATED" "MS4A14 WILD-TYPE" "MS4A14 WILD-TYPE" "MS4A14 WILD-TYPE" 
      TCGA-91-6836 
"MS4A14 WILD-TYPE" 
[1] "hr=" "1.1"
D262V2, continuous
D262V3, binary
[1] "tbl2"
                  cls
clus               [,1] [,2]
  MS4A14 MUTATED      6    4
  MS4A14 WILD-TYPE   87   75
        clus
vv       MS4A14 MUTATED MS4A14 WILD-TYPE
  FEMALE              6               87
  MALE                4               75
D262V4, continuous
D262V5, multiclass
D262V6, multiclass
    clus
vv   MS4A14 MUTATED MS4A14 WILD-TYPE
  T1              2               39
  T2              5              103
  T3              3               11
  T4              0                8
D262V7, multiclass
       clus
vv      MS4A14 MUTATED MS4A14 WILD-TYPE
  N0                 7               88
  N1                 1               36
  N2+N3              2               33
D262V8, multiclass
    clus
vv   MS4A14 MUTATED MS4A14 WILD-TYPE
  M0              8              129
  M1              0                9
  MX              2               20
D262V9, multiclass
     clus
vv    MS4A14 MUTATED MS4A14 WILD-TYPE
  I                5               83
  II               3               30
  III              2               37
  IV               0                9
D262V10, binary
[1] "tbl2"
                  cls
clus               [,1] [,2]
  MS4A14 MUTATED      1    9
  MS4A14 WILD-TYPE   15  147
     clus
vv    MS4A14 MUTATED MS4A14 WILD-TYPE
  NO               1               15
  YES              9              147
D262V11, continuous
D262V12, continuous
D262V13, multiclass
                                             clus
vv                                            MS4A14 MUTATED MS4A14 WILD-TYPE
  CURRENT REFORMED SMOKER FOR < OR = 15 YEARS              5               57
  CURRENT REFORMED SMOKER FOR > 15 YEARS                   3               43
  CURRENT SMOKER                                           2               26
  LIFELONG NON-SMOKER                                      0               24
D262V14, continuous

Clustering(263) Variable = TWISTNB MUTATION ANALYSIS
D263V1, survival
                   sevent
clus2                0  1
  TWISTNB MUTATED    4  2
  TWISTNB WILD-TYPE 95 48
  TWISTNB MUTATED TWISTNB WILD-TYPE 
                6               143 
  TWISTNB MUTATED TWISTNB WILD-TYPE 
                2                48 
$`TWISTNB MUTATED`
TCGA-35-4122 TCGA-49-4507 TCGA-50-5051 TCGA-64-1677 TCGA-64-5779 TCGA-67-3771 
        7.36         8.81        14.96        20.65        16.67         1.97 

$`TWISTNB WILD-TYPE`
TCGA-05-4249 TCGA-05-4250 TCGA-05-4382 TCGA-05-4384 TCGA-05-4390 TCGA-05-4396 
       38.07         3.98        19.92        14.01        37.02         9.96 
TCGA-05-4397 TCGA-05-4398 TCGA-05-4402 TCGA-05-4405 TCGA-05-4415 TCGA-05-4417 
       24.03        47.05         8.02        20.05         2.96        14.93 
TCGA-05-4418 TCGA-05-4420 TCGA-05-4424 TCGA-05-4426 TCGA-05-4427 TCGA-05-4430 
        8.98        29.95        30.02        26.01        26.01        25.02 
TCGA-05-4432 TCGA-05-4433 TCGA-05-4434 TCGA-05-5420 TCGA-05-5423 TCGA-05-5425 
       25.02        24.00        15.02         1.02         4.96         2.96 
TCGA-05-5429 TCGA-05-5715 TCGA-35-3615 TCGA-35-4123 TCGA-35-5375 TCGA-38-4625 
        0.99         2.04         0.46         5.95         8.68        47.61 
TCGA-38-4626 TCGA-38-4627 TCGA-38-4628 TCGA-38-4629 TCGA-38-4630 TCGA-38-4631 
       85.32        37.71        49.02        28.37        35.28        11.64 
TCGA-38-4632 TCGA-38-6178 TCGA-44-2655 TCGA-44-2656 TCGA-44-2657 TCGA-44-2659 
       44.61         5.19        18.87        19.10        13.15        17.39 
TCGA-44-2661 TCGA-44-2662 TCGA-44-2665 TCGA-44-2666 TCGA-44-2668 TCGA-44-3396 
        3.39        15.78        13.15         3.19         8.09        10.22 
TCGA-44-3398 TCGA-44-3918 TCGA-44-3919 TCGA-44-4112 TCGA-44-5643 TCGA-44-5645 
        8.32         6.44         6.21         4.60         3.48         6.84 
TCGA-44-6144 TCGA-44-6145 TCGA-44-6146 TCGA-44-6147 TCGA-44-6148 TCGA-44-6774 
        0.30         3.35         9.93         7.76         3.12         5.42 
TCGA-44-6775 TCGA-44-6776 TCGA-44-6777 TCGA-44-6778 TCGA-44-6779 TCGA-49-4486 
        2.70        63.72        32.45        36.49        16.41        76.21 
TCGA-49-4487 TCGA-49-4488 TCGA-49-4490 TCGA-49-4494 TCGA-49-4501 TCGA-49-4505 
       28.11        28.57        12.66        35.54        46.72        14.07 
TCGA-49-4506 TCGA-49-4510 TCGA-49-4512 TCGA-49-4514 TCGA-49-6742 TCGA-49-6743 
       32.84        29.46        29.75        43.20        15.02        12.13 
TCGA-49-6744 TCGA-49-6745 TCGA-50-5044 TCGA-50-5045 TCGA-50-5049 TCGA-50-5055 
       12.99         4.93        20.48        71.47        48.82        25.81 
TCGA-50-5066 TCGA-50-5068 TCGA-50-5072 TCGA-50-5930 TCGA-50-5931 TCGA-50-5932 
        9.76        49.28         8.05         9.27         8.78        35.87 
TCGA-50-5933 TCGA-50-5935 TCGA-50-5936 TCGA-50-5939 TCGA-50-5941 TCGA-50-5942 
       77.88        21.47         8.45        15.12         9.37         4.44 
TCGA-50-5944 TCGA-50-5946 TCGA-50-6590 TCGA-50-6591 TCGA-50-6592 TCGA-50-6593 
       12.26        11.47        42.31         3.88        25.51        11.05 
TCGA-50-6594 TCGA-50-6595 TCGA-50-6597 TCGA-55-1592 TCGA-55-1594 TCGA-55-1595 
       12.16         6.21        33.37        23.05        38.73        48.62 
TCGA-55-1596 TCGA-55-5899 TCGA-55-6543 TCGA-55-6642 TCGA-55-6712 TCGA-64-1676 
       45.17         2.86         0.07        32.61         0.79        56.81 
TCGA-64-1678 TCGA-64-1680 TCGA-64-5774 TCGA-64-5775 TCGA-64-5778 TCGA-64-5781 
       39.09        37.02        83.84         0.10        30.44        39.52 
TCGA-64-5815 TCGA-67-3770 TCGA-67-3772 TCGA-67-3773 TCGA-67-3774 TCGA-67-6215 
        7.33         0.99         0.59         2.04         0.59         0.89 
TCGA-67-6216 TCGA-67-6217 TCGA-71-6725 TCGA-73-4658 TCGA-73-4659 TCGA-73-4662 
        0.69        13.87         2.01        52.57        23.38        29.95 
TCGA-73-4666 TCGA-73-4668 TCGA-73-4670 TCGA-73-4675 TCGA-73-4676 TCGA-73-4677 
       20.28        15.35         0.46         1.32         4.01         1.25 
TCGA-91-6828 TCGA-91-6829 TCGA-91-6831 TCGA-91-6835 TCGA-91-6836 
        1.22        41.33         1.28         1.15         0.36 

  TWISTNB MUTATED TWISTNB WILD-TYPE 
             1.97              0.07 
  TWISTNB MUTATED TWISTNB WILD-TYPE 
            20.65             85.32 
  TWISTNB MUTATED TWISTNB WILD-TYPE 
           11.885            13.870 
[1] "2.0 - 20.6 (11.9)" "0.1 - 85.3 (13.9)"
       TCGA-05-4249        TCGA-05-4250        TCGA-05-4382        TCGA-05-4384 
"TWISTNB WILD-TYPE" "TWISTNB WILD-TYPE" "TWISTNB WILD-TYPE" "TWISTNB WILD-TYPE" 
       TCGA-05-4390        TCGA-05-4396        TCGA-05-4397        TCGA-05-4398 
"TWISTNB WILD-TYPE" "TWISTNB WILD-TYPE" "TWISTNB WILD-TYPE" "TWISTNB WILD-TYPE" 
       TCGA-05-4402        TCGA-05-4405        TCGA-05-4415        TCGA-05-4417 
"TWISTNB WILD-TYPE" "TWISTNB WILD-TYPE" "TWISTNB WILD-TYPE" "TWISTNB WILD-TYPE" 
       TCGA-05-4418        TCGA-05-4420        TCGA-05-4424        TCGA-05-4426 
"TWISTNB WILD-TYPE" "TWISTNB WILD-TYPE" "TWISTNB WILD-TYPE" "TWISTNB WILD-TYPE" 
       TCGA-05-4427        TCGA-05-4430        TCGA-05-4432        TCGA-05-4433 
"TWISTNB WILD-TYPE" "TWISTNB WILD-TYPE" "TWISTNB WILD-TYPE" "TWISTNB WILD-TYPE" 
       TCGA-05-4434        TCGA-05-5420        TCGA-05-5423        TCGA-05-5425 
"TWISTNB WILD-TYPE" "TWISTNB WILD-TYPE" "TWISTNB WILD-TYPE" "TWISTNB WILD-TYPE" 
       TCGA-05-5429        TCGA-05-5715        TCGA-35-3615        TCGA-35-4122 
"TWISTNB WILD-TYPE" "TWISTNB WILD-TYPE" "TWISTNB WILD-TYPE"   "TWISTNB MUTATED" 
       TCGA-35-4123        TCGA-35-5375        TCGA-38-4625        TCGA-38-4626 
"TWISTNB WILD-TYPE" "TWISTNB WILD-TYPE" "TWISTNB WILD-TYPE" "TWISTNB WILD-TYPE" 
       TCGA-38-4627        TCGA-38-4628        TCGA-38-4629        TCGA-38-4630 
"TWISTNB WILD-TYPE" "TWISTNB WILD-TYPE" "TWISTNB WILD-TYPE" "TWISTNB WILD-TYPE" 
       TCGA-38-4631        TCGA-38-4632        TCGA-38-6178        TCGA-44-2655 
"TWISTNB WILD-TYPE" "TWISTNB WILD-TYPE" "TWISTNB WILD-TYPE" "TWISTNB WILD-TYPE" 
       TCGA-44-2656        TCGA-44-2657        TCGA-44-2659        TCGA-44-2661 
"TWISTNB WILD-TYPE" "TWISTNB WILD-TYPE" "TWISTNB WILD-TYPE" "TWISTNB WILD-TYPE" 
       TCGA-44-2662        TCGA-44-2665        TCGA-44-2666        TCGA-44-2668 
"TWISTNB WILD-TYPE" "TWISTNB WILD-TYPE" "TWISTNB WILD-TYPE" "TWISTNB WILD-TYPE" 
       TCGA-44-3396        TCGA-44-3398        TCGA-44-3918        TCGA-44-3919 
"TWISTNB WILD-TYPE" "TWISTNB WILD-TYPE" "TWISTNB WILD-TYPE" "TWISTNB WILD-TYPE" 
       TCGA-44-4112        TCGA-44-5643        TCGA-44-5645        TCGA-44-6144 
"TWISTNB WILD-TYPE" "TWISTNB WILD-TYPE" "TWISTNB WILD-TYPE" "TWISTNB WILD-TYPE" 
       TCGA-44-6145        TCGA-44-6146        TCGA-44-6147        TCGA-44-6148 
"TWISTNB WILD-TYPE" "TWISTNB WILD-TYPE" "TWISTNB WILD-TYPE" "TWISTNB WILD-TYPE" 
       TCGA-44-6774        TCGA-44-6775        TCGA-44-6776        TCGA-44-6777 
"TWISTNB WILD-TYPE" "TWISTNB WILD-TYPE" "TWISTNB WILD-TYPE" "TWISTNB WILD-TYPE" 
       TCGA-44-6778        TCGA-44-6779        TCGA-49-4486        TCGA-49-4487 
"TWISTNB WILD-TYPE" "TWISTNB WILD-TYPE" "TWISTNB WILD-TYPE" "TWISTNB WILD-TYPE" 
       TCGA-49-4488        TCGA-49-4490        TCGA-49-4494        TCGA-49-4501 
"TWISTNB WILD-TYPE" "TWISTNB WILD-TYPE" "TWISTNB WILD-TYPE" "TWISTNB WILD-TYPE" 
       TCGA-49-4505        TCGA-49-4506        TCGA-49-4507        TCGA-49-4510 
"TWISTNB WILD-TYPE" "TWISTNB WILD-TYPE"   "TWISTNB MUTATED" "TWISTNB WILD-TYPE" 
       TCGA-49-4512        TCGA-49-4514        TCGA-49-6742        TCGA-49-6743 
"TWISTNB WILD-TYPE" "TWISTNB WILD-TYPE" "TWISTNB WILD-TYPE" "TWISTNB WILD-TYPE" 
       TCGA-49-6744        TCGA-49-6745        TCGA-50-5044        TCGA-50-5045 
"TWISTNB WILD-TYPE" "TWISTNB WILD-TYPE" "TWISTNB WILD-TYPE" "TWISTNB WILD-TYPE" 
       TCGA-50-5049        TCGA-50-5051        TCGA-50-5055        TCGA-50-5066 
"TWISTNB WILD-TYPE"   "TWISTNB MUTATED" "TWISTNB WILD-TYPE" "TWISTNB WILD-TYPE" 
       TCGA-50-5068        TCGA-50-5072        TCGA-50-5930        TCGA-50-5931 
"TWISTNB WILD-TYPE" "TWISTNB WILD-TYPE" "TWISTNB WILD-TYPE" "TWISTNB WILD-TYPE" 
       TCGA-50-5932        TCGA-50-5933        TCGA-50-5935        TCGA-50-5936 
"TWISTNB WILD-TYPE" "TWISTNB WILD-TYPE" "TWISTNB WILD-TYPE" "TWISTNB WILD-TYPE" 
       TCGA-50-5939        TCGA-50-5941        TCGA-50-5942        TCGA-50-5944 
"TWISTNB WILD-TYPE" "TWISTNB WILD-TYPE" "TWISTNB WILD-TYPE" "TWISTNB WILD-TYPE" 
       TCGA-50-5946        TCGA-50-6590        TCGA-50-6591        TCGA-50-6592 
"TWISTNB WILD-TYPE" "TWISTNB WILD-TYPE" "TWISTNB WILD-TYPE" "TWISTNB WILD-TYPE" 
       TCGA-50-6593        TCGA-50-6594        TCGA-50-6595        TCGA-50-6597 
"TWISTNB WILD-TYPE" "TWISTNB WILD-TYPE" "TWISTNB WILD-TYPE" "TWISTNB WILD-TYPE" 
       TCGA-55-1592        TCGA-55-1594        TCGA-55-1595        TCGA-55-1596 
"TWISTNB WILD-TYPE" "TWISTNB WILD-TYPE" "TWISTNB WILD-TYPE" "TWISTNB WILD-TYPE" 
       TCGA-55-5899        TCGA-55-6543        TCGA-55-6642        TCGA-55-6712 
"TWISTNB WILD-TYPE" "TWISTNB WILD-TYPE" "TWISTNB WILD-TYPE" "TWISTNB WILD-TYPE" 
       TCGA-64-1676        TCGA-64-1677        TCGA-64-1678        TCGA-64-1680 
"TWISTNB WILD-TYPE"   "TWISTNB MUTATED" "TWISTNB WILD-TYPE" "TWISTNB WILD-TYPE" 
       TCGA-64-5774        TCGA-64-5775        TCGA-64-5778        TCGA-64-5779 
"TWISTNB WILD-TYPE" "TWISTNB WILD-TYPE" "TWISTNB WILD-TYPE"   "TWISTNB MUTATED" 
       TCGA-64-5781        TCGA-64-5815        TCGA-67-3770        TCGA-67-3771 
"TWISTNB WILD-TYPE" "TWISTNB WILD-TYPE" "TWISTNB WILD-TYPE"   "TWISTNB MUTATED" 
       TCGA-67-3772        TCGA-67-3773        TCGA-67-3774        TCGA-67-6215 
"TWISTNB WILD-TYPE" "TWISTNB WILD-TYPE" "TWISTNB WILD-TYPE" "TWISTNB WILD-TYPE" 
       TCGA-67-6216        TCGA-67-6217        TCGA-71-6725        TCGA-73-4658 
"TWISTNB WILD-TYPE" "TWISTNB WILD-TYPE" "TWISTNB WILD-TYPE" "TWISTNB WILD-TYPE" 
       TCGA-73-4659        TCGA-73-4662        TCGA-73-4666        TCGA-73-4668 
"TWISTNB WILD-TYPE" "TWISTNB WILD-TYPE" "TWISTNB WILD-TYPE" "TWISTNB WILD-TYPE" 
       TCGA-73-4670        TCGA-73-4675        TCGA-73-4676        TCGA-73-4677 
"TWISTNB WILD-TYPE" "TWISTNB WILD-TYPE" "TWISTNB WILD-TYPE" "TWISTNB WILD-TYPE" 
       TCGA-91-6828        TCGA-91-6829        TCGA-91-6831        TCGA-91-6835 
"TWISTNB WILD-TYPE" "TWISTNB WILD-TYPE" "TWISTNB WILD-TYPE" "TWISTNB WILD-TYPE" 
       TCGA-91-6836 
"TWISTNB WILD-TYPE" 
       TCGA-05-4249        TCGA-05-4250        TCGA-05-4382        TCGA-05-4384 
"TWISTNB WILD-TYPE" "TWISTNB WILD-TYPE" "TWISTNB WILD-TYPE" "TWISTNB WILD-TYPE" 
       TCGA-05-4390        TCGA-05-4396        TCGA-05-4397        TCGA-05-4398 
"TWISTNB WILD-TYPE" "TWISTNB WILD-TYPE" "TWISTNB WILD-TYPE" "TWISTNB WILD-TYPE" 
       TCGA-05-4402        TCGA-05-4405        TCGA-05-4415        TCGA-05-4417 
"TWISTNB WILD-TYPE" "TWISTNB WILD-TYPE" "TWISTNB WILD-TYPE" "TWISTNB WILD-TYPE" 
       TCGA-05-4418        TCGA-05-4420        TCGA-05-4424        TCGA-05-4426 
"TWISTNB WILD-TYPE" "TWISTNB WILD-TYPE" "TWISTNB WILD-TYPE" "TWISTNB WILD-TYPE" 
       TCGA-05-4427        TCGA-05-4430        TCGA-05-4432        TCGA-05-4433 
"TWISTNB WILD-TYPE" "TWISTNB WILD-TYPE" "TWISTNB WILD-TYPE" "TWISTNB WILD-TYPE" 
       TCGA-05-4434        TCGA-05-5420        TCGA-05-5423        TCGA-05-5425 
"TWISTNB WILD-TYPE" "TWISTNB WILD-TYPE" "TWISTNB WILD-TYPE" "TWISTNB WILD-TYPE" 
       TCGA-05-5429        TCGA-05-5715        TCGA-35-3615        TCGA-35-4122 
"TWISTNB WILD-TYPE" "TWISTNB WILD-TYPE" "TWISTNB WILD-TYPE"   "TWISTNB MUTATED" 
       TCGA-35-4123        TCGA-35-5375        TCGA-38-4625        TCGA-38-4626 
"TWISTNB WILD-TYPE" "TWISTNB WILD-TYPE" "TWISTNB WILD-TYPE" "TWISTNB WILD-TYPE" 
       TCGA-38-4627        TCGA-38-4628        TCGA-38-4629        TCGA-38-4630 
"TWISTNB WILD-TYPE" "TWISTNB WILD-TYPE" "TWISTNB WILD-TYPE" "TWISTNB WILD-TYPE" 
       TCGA-38-4631        TCGA-38-4632        TCGA-38-6178        TCGA-44-2655 
"TWISTNB WILD-TYPE" "TWISTNB WILD-TYPE" "TWISTNB WILD-TYPE" "TWISTNB WILD-TYPE" 
       TCGA-44-2656        TCGA-44-2657        TCGA-44-2659        TCGA-44-2661 
"TWISTNB WILD-TYPE" "TWISTNB WILD-TYPE" "TWISTNB WILD-TYPE" "TWISTNB WILD-TYPE" 
       TCGA-44-2662        TCGA-44-2665        TCGA-44-2666        TCGA-44-2668 
"TWISTNB WILD-TYPE" "TWISTNB WILD-TYPE" "TWISTNB WILD-TYPE" "TWISTNB WILD-TYPE" 
       TCGA-44-3396        TCGA-44-3398        TCGA-44-3918        TCGA-44-3919 
"TWISTNB WILD-TYPE" "TWISTNB WILD-TYPE" "TWISTNB WILD-TYPE" "TWISTNB WILD-TYPE" 
       TCGA-44-4112        TCGA-44-5643        TCGA-44-5645        TCGA-44-6144 
"TWISTNB WILD-TYPE" "TWISTNB WILD-TYPE" "TWISTNB WILD-TYPE" "TWISTNB WILD-TYPE" 
       TCGA-44-6145        TCGA-44-6146        TCGA-44-6147        TCGA-44-6148 
"TWISTNB WILD-TYPE" "TWISTNB WILD-TYPE" "TWISTNB WILD-TYPE" "TWISTNB WILD-TYPE" 
       TCGA-44-6774        TCGA-44-6775        TCGA-44-6776        TCGA-44-6777 
"TWISTNB WILD-TYPE" "TWISTNB WILD-TYPE" "TWISTNB WILD-TYPE" "TWISTNB WILD-TYPE" 
       TCGA-44-6778        TCGA-44-6779        TCGA-49-4486        TCGA-49-4487 
"TWISTNB WILD-TYPE" "TWISTNB WILD-TYPE" "TWISTNB WILD-TYPE" "TWISTNB WILD-TYPE" 
       TCGA-49-4488        TCGA-49-4490        TCGA-49-4494        TCGA-49-4501 
"TWISTNB WILD-TYPE" "TWISTNB WILD-TYPE" "TWISTNB WILD-TYPE" "TWISTNB WILD-TYPE" 
       TCGA-49-4505        TCGA-49-4506        TCGA-49-4507        TCGA-49-4510 
"TWISTNB WILD-TYPE" "TWISTNB WILD-TYPE"   "TWISTNB MUTATED" "TWISTNB WILD-TYPE" 
       TCGA-49-4512        TCGA-49-4514        TCGA-49-6742        TCGA-49-6743 
"TWISTNB WILD-TYPE" "TWISTNB WILD-TYPE" "TWISTNB WILD-TYPE" "TWISTNB WILD-TYPE" 
       TCGA-49-6744        TCGA-49-6745        TCGA-50-5044        TCGA-50-5045 
"TWISTNB WILD-TYPE" "TWISTNB WILD-TYPE" "TWISTNB WILD-TYPE" "TWISTNB WILD-TYPE" 
       TCGA-50-5049        TCGA-50-5051        TCGA-50-5055        TCGA-50-5066 
"TWISTNB WILD-TYPE"   "TWISTNB MUTATED" "TWISTNB WILD-TYPE" "TWISTNB WILD-TYPE" 
       TCGA-50-5068        TCGA-50-5072        TCGA-50-5930        TCGA-50-5931 
"TWISTNB WILD-TYPE" "TWISTNB WILD-TYPE" "TWISTNB WILD-TYPE" "TWISTNB WILD-TYPE" 
       TCGA-50-5932        TCGA-50-5933        TCGA-50-5935        TCGA-50-5936 
"TWISTNB WILD-TYPE" "TWISTNB WILD-TYPE" "TWISTNB WILD-TYPE" "TWISTNB WILD-TYPE" 
       TCGA-50-5939        TCGA-50-5941        TCGA-50-5942        TCGA-50-5944 
"TWISTNB WILD-TYPE" "TWISTNB WILD-TYPE" "TWISTNB WILD-TYPE" "TWISTNB WILD-TYPE" 
       TCGA-50-5946        TCGA-50-6590        TCGA-50-6591        TCGA-50-6592 
"TWISTNB WILD-TYPE" "TWISTNB WILD-TYPE" "TWISTNB WILD-TYPE" "TWISTNB WILD-TYPE" 
       TCGA-50-6593        TCGA-50-6594        TCGA-50-6595        TCGA-50-6597 
"TWISTNB WILD-TYPE" "TWISTNB WILD-TYPE" "TWISTNB WILD-TYPE" "TWISTNB WILD-TYPE" 
       TCGA-55-1592        TCGA-55-1594        TCGA-55-1595        TCGA-55-1596 
"TWISTNB WILD-TYPE" "TWISTNB WILD-TYPE" "TWISTNB WILD-TYPE" "TWISTNB WILD-TYPE" 
       TCGA-55-5899        TCGA-55-6543        TCGA-55-6642        TCGA-55-6712 
"TWISTNB WILD-TYPE" "TWISTNB WILD-TYPE" "TWISTNB WILD-TYPE" "TWISTNB WILD-TYPE" 
       TCGA-64-1676        TCGA-64-1677        TCGA-64-1678        TCGA-64-1680 
"TWISTNB WILD-TYPE"   "TWISTNB MUTATED" "TWISTNB WILD-TYPE" "TWISTNB WILD-TYPE" 
       TCGA-64-5774        TCGA-64-5775        TCGA-64-5778        TCGA-64-5779 
"TWISTNB WILD-TYPE" "TWISTNB WILD-TYPE" "TWISTNB WILD-TYPE"   "TWISTNB MUTATED" 
       TCGA-64-5781        TCGA-64-5815        TCGA-67-3770        TCGA-67-3771 
"TWISTNB WILD-TYPE" "TWISTNB WILD-TYPE" "TWISTNB WILD-TYPE"   "TWISTNB MUTATED" 
       TCGA-67-3772        TCGA-67-3773        TCGA-67-3774        TCGA-67-6215 
"TWISTNB WILD-TYPE" "TWISTNB WILD-TYPE" "TWISTNB WILD-TYPE" "TWISTNB WILD-TYPE" 
       TCGA-67-6216        TCGA-67-6217        TCGA-71-6725        TCGA-73-4658 
"TWISTNB WILD-TYPE" "TWISTNB WILD-TYPE" "TWISTNB WILD-TYPE" "TWISTNB WILD-TYPE" 
       TCGA-73-4659        TCGA-73-4662        TCGA-73-4666        TCGA-73-4668 
"TWISTNB WILD-TYPE" "TWISTNB WILD-TYPE" "TWISTNB WILD-TYPE" "TWISTNB WILD-TYPE" 
       TCGA-73-4670        TCGA-73-4675        TCGA-73-4676        TCGA-73-4677 
"TWISTNB WILD-TYPE" "TWISTNB WILD-TYPE" "TWISTNB WILD-TYPE" "TWISTNB WILD-TYPE" 
       TCGA-91-6828        TCGA-91-6829        TCGA-91-6831        TCGA-91-6835 
"TWISTNB WILD-TYPE" "TWISTNB WILD-TYPE" "TWISTNB WILD-TYPE" "TWISTNB WILD-TYPE" 
       TCGA-91-6836 
"TWISTNB WILD-TYPE" 
       TCGA-05-4249        TCGA-05-4250        TCGA-05-4382        TCGA-05-4384 
"TWISTNB WILD-TYPE" "TWISTNB WILD-TYPE" "TWISTNB WILD-TYPE" "TWISTNB WILD-TYPE" 
       TCGA-05-4390        TCGA-05-4396        TCGA-05-4397        TCGA-05-4398 
"TWISTNB WILD-TYPE" "TWISTNB WILD-TYPE" "TWISTNB WILD-TYPE" "TWISTNB WILD-TYPE" 
       TCGA-05-4402        TCGA-05-4405        TCGA-05-4415        TCGA-05-4417 
"TWISTNB WILD-TYPE" "TWISTNB WILD-TYPE" "TWISTNB WILD-TYPE" "TWISTNB WILD-TYPE" 
       TCGA-05-4418        TCGA-05-4420        TCGA-05-4424        TCGA-05-4426 
"TWISTNB WILD-TYPE" "TWISTNB WILD-TYPE" "TWISTNB WILD-TYPE" "TWISTNB WILD-TYPE" 
       TCGA-05-4427        TCGA-05-4430        TCGA-05-4432        TCGA-05-4433 
"TWISTNB WILD-TYPE" "TWISTNB WILD-TYPE" "TWISTNB WILD-TYPE" "TWISTNB WILD-TYPE" 
       TCGA-05-4434        TCGA-05-5420        TCGA-05-5423        TCGA-05-5425 
"TWISTNB WILD-TYPE" "TWISTNB WILD-TYPE" "TWISTNB WILD-TYPE" "TWISTNB WILD-TYPE" 
       TCGA-05-5429        TCGA-05-5715        TCGA-35-3615        TCGA-35-4122 
"TWISTNB WILD-TYPE" "TWISTNB WILD-TYPE" "TWISTNB WILD-TYPE"   "TWISTNB MUTATED" 
       TCGA-35-4123        TCGA-35-5375        TCGA-38-4625        TCGA-38-4626 
"TWISTNB WILD-TYPE" "TWISTNB WILD-TYPE" "TWISTNB WILD-TYPE" "TWISTNB WILD-TYPE" 
       TCGA-38-4627        TCGA-38-4628        TCGA-38-4629        TCGA-38-4630 
"TWISTNB WILD-TYPE" "TWISTNB WILD-TYPE" "TWISTNB WILD-TYPE" "TWISTNB WILD-TYPE" 
       TCGA-38-4631        TCGA-38-4632        TCGA-38-6178        TCGA-44-2655 
"TWISTNB WILD-TYPE" "TWISTNB WILD-TYPE" "TWISTNB WILD-TYPE" "TWISTNB WILD-TYPE" 
       TCGA-44-2656        TCGA-44-2657        TCGA-44-2659        TCGA-44-2661 
"TWISTNB WILD-TYPE" "TWISTNB WILD-TYPE" "TWISTNB WILD-TYPE" "TWISTNB WILD-TYPE" 
       TCGA-44-2662        TCGA-44-2665        TCGA-44-2666        TCGA-44-2668 
"TWISTNB WILD-TYPE" "TWISTNB WILD-TYPE" "TWISTNB WILD-TYPE" "TWISTNB WILD-TYPE" 
       TCGA-44-3396        TCGA-44-3398        TCGA-44-3918        TCGA-44-3919 
"TWISTNB WILD-TYPE" "TWISTNB WILD-TYPE" "TWISTNB WILD-TYPE" "TWISTNB WILD-TYPE" 
       TCGA-44-4112        TCGA-44-5643        TCGA-44-5645        TCGA-44-6144 
"TWISTNB WILD-TYPE" "TWISTNB WILD-TYPE" "TWISTNB WILD-TYPE" "TWISTNB WILD-TYPE" 
       TCGA-44-6145        TCGA-44-6146        TCGA-44-6147        TCGA-44-6148 
"TWISTNB WILD-TYPE" "TWISTNB WILD-TYPE" "TWISTNB WILD-TYPE" "TWISTNB WILD-TYPE" 
       TCGA-44-6774        TCGA-44-6775        TCGA-44-6776        TCGA-44-6777 
"TWISTNB WILD-TYPE" "TWISTNB WILD-TYPE" "TWISTNB WILD-TYPE" "TWISTNB WILD-TYPE" 
       TCGA-44-6778        TCGA-44-6779        TCGA-49-4486        TCGA-49-4487 
"TWISTNB WILD-TYPE" "TWISTNB WILD-TYPE" "TWISTNB WILD-TYPE" "TWISTNB WILD-TYPE" 
       TCGA-49-4488        TCGA-49-4490        TCGA-49-4494        TCGA-49-4501 
"TWISTNB WILD-TYPE" "TWISTNB WILD-TYPE" "TWISTNB WILD-TYPE" "TWISTNB WILD-TYPE" 
       TCGA-49-4505        TCGA-49-4506        TCGA-49-4507        TCGA-49-4510 
"TWISTNB WILD-TYPE" "TWISTNB WILD-TYPE"   "TWISTNB MUTATED" "TWISTNB WILD-TYPE" 
       TCGA-49-4512        TCGA-49-4514        TCGA-49-6742        TCGA-49-6743 
"TWISTNB WILD-TYPE" "TWISTNB WILD-TYPE" "TWISTNB WILD-TYPE" "TWISTNB WILD-TYPE" 
       TCGA-49-6744        TCGA-49-6745        TCGA-50-5044        TCGA-50-5045 
"TWISTNB WILD-TYPE" "TWISTNB WILD-TYPE" "TWISTNB WILD-TYPE" "TWISTNB WILD-TYPE" 
       TCGA-50-5049        TCGA-50-5051        TCGA-50-5055        TCGA-50-5066 
"TWISTNB WILD-TYPE"   "TWISTNB MUTATED" "TWISTNB WILD-TYPE" "TWISTNB WILD-TYPE" 
       TCGA-50-5068        TCGA-50-5072        TCGA-50-5930        TCGA-50-5931 
"TWISTNB WILD-TYPE" "TWISTNB WILD-TYPE" "TWISTNB WILD-TYPE" "TWISTNB WILD-TYPE" 
       TCGA-50-5932        TCGA-50-5933        TCGA-50-5935        TCGA-50-5936 
"TWISTNB WILD-TYPE" "TWISTNB WILD-TYPE" "TWISTNB WILD-TYPE" "TWISTNB WILD-TYPE" 
       TCGA-50-5939        TCGA-50-5941        TCGA-50-5942        TCGA-50-5944 
"TWISTNB WILD-TYPE" "TWISTNB WILD-TYPE" "TWISTNB WILD-TYPE" "TWISTNB WILD-TYPE" 
       TCGA-50-5946        TCGA-50-6590        TCGA-50-6591        TCGA-50-6592 
"TWISTNB WILD-TYPE" "TWISTNB WILD-TYPE" "TWISTNB WILD-TYPE" "TWISTNB WILD-TYPE" 
       TCGA-50-6593        TCGA-50-6594        TCGA-50-6595        TCGA-50-6597 
"TWISTNB WILD-TYPE" "TWISTNB WILD-TYPE" "TWISTNB WILD-TYPE" "TWISTNB WILD-TYPE" 
       TCGA-55-1592        TCGA-55-1594        TCGA-55-1595        TCGA-55-1596 
"TWISTNB WILD-TYPE" "TWISTNB WILD-TYPE" "TWISTNB WILD-TYPE" "TWISTNB WILD-TYPE" 
       TCGA-55-5899        TCGA-55-6543        TCGA-55-6642        TCGA-55-6712 
"TWISTNB WILD-TYPE" "TWISTNB WILD-TYPE" "TWISTNB WILD-TYPE" "TWISTNB WILD-TYPE" 
       TCGA-64-1676        TCGA-64-1677        TCGA-64-1678        TCGA-64-1680 
"TWISTNB WILD-TYPE"   "TWISTNB MUTATED" "TWISTNB WILD-TYPE" "TWISTNB WILD-TYPE" 
       TCGA-64-5774        TCGA-64-5775        TCGA-64-5778        TCGA-64-5779 
"TWISTNB WILD-TYPE" "TWISTNB WILD-TYPE" "TWISTNB WILD-TYPE"   "TWISTNB MUTATED" 
       TCGA-64-5781        TCGA-64-5815        TCGA-67-3770        TCGA-67-3771 
"TWISTNB WILD-TYPE" "TWISTNB WILD-TYPE" "TWISTNB WILD-TYPE"   "TWISTNB MUTATED" 
       TCGA-67-3772        TCGA-67-3773        TCGA-67-3774        TCGA-67-6215 
"TWISTNB WILD-TYPE" "TWISTNB WILD-TYPE" "TWISTNB WILD-TYPE" "TWISTNB WILD-TYPE" 
       TCGA-67-6216        TCGA-67-6217        TCGA-71-6725        TCGA-73-4658 
"TWISTNB WILD-TYPE" "TWISTNB WILD-TYPE" "TWISTNB WILD-TYPE" "TWISTNB WILD-TYPE" 
       TCGA-73-4659        TCGA-73-4662        TCGA-73-4666        TCGA-73-4668 
"TWISTNB WILD-TYPE" "TWISTNB WILD-TYPE" "TWISTNB WILD-TYPE" "TWISTNB WILD-TYPE" 
       TCGA-73-4670        TCGA-73-4675        TCGA-73-4676        TCGA-73-4677 
"TWISTNB WILD-TYPE" "TWISTNB WILD-TYPE" "TWISTNB WILD-TYPE" "TWISTNB WILD-TYPE" 
       TCGA-91-6828        TCGA-91-6829        TCGA-91-6831        TCGA-91-6835 
"TWISTNB WILD-TYPE" "TWISTNB WILD-TYPE" "TWISTNB WILD-TYPE" "TWISTNB WILD-TYPE" 
       TCGA-91-6836 
"TWISTNB WILD-TYPE" 
[1] "hr=" "2.4"
D263V2, continuous
D263V3, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  TWISTNB MUTATED      4    3
  TWISTNB WILD-TYPE   89   76
        clus
vv       TWISTNB MUTATED TWISTNB WILD-TYPE
  FEMALE               4                89
  MALE                 3                76
D263V4, continuous
[1] "Remove cluster labels:" "TWISTNB MUTATED"       
clus
  TWISTNB MUTATED TWISTNB WILD-TYPE 
                2                10 
       TCGA-35-4123        TCGA-35-5375        TCGA-64-5778        TCGA-71-6725 
"TWISTNB WILD-TYPE" "TWISTNB WILD-TYPE" "TWISTNB WILD-TYPE" "TWISTNB WILD-TYPE" 
       TCGA-73-4659        TCGA-73-4662        TCGA-73-4666        TCGA-73-4668 
"TWISTNB WILD-TYPE" "TWISTNB WILD-TYPE" "TWISTNB WILD-TYPE" "TWISTNB WILD-TYPE" 
       TCGA-73-4676        TCGA-75-5122 
"TWISTNB WILD-TYPE" "TWISTNB WILD-TYPE" 
D263V5, multiclass
D263V6, multiclass
    clus
vv   TWISTNB MUTATED TWISTNB WILD-TYPE
  T1               3                38
  T2               3               105
  T3               1                13
  T4               0                 8
D263V7, multiclass
       clus
vv      TWISTNB MUTATED TWISTNB WILD-TYPE
  N0                  2                93
  N1                  2                35
  N2+N3               3                32
D263V8, multiclass
    clus
vv   TWISTNB MUTATED TWISTNB WILD-TYPE
  M0               7               130
  M1               0                 9
  MX               0                22
D263V9, multiclass
     clus
vv    TWISTNB MUTATED TWISTNB WILD-TYPE
  I                 2                86
  II                1                32
  III               4                35
  IV                0                 9
D263V10, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  TWISTNB MUTATED      2    5
  TWISTNB WILD-TYPE   14  151
     clus
vv    TWISTNB MUTATED TWISTNB WILD-TYPE
  NO                2                14
  YES               5               151
D263V11, continuous
D263V12, continuous
D263V13, multiclass
                                             clus
vv                                            TWISTNB MUTATED TWISTNB WILD-TYPE
  CURRENT REFORMED SMOKER FOR < OR = 15 YEARS               5                57
  CURRENT REFORMED SMOKER FOR > 15 YEARS                    1                45
  CURRENT SMOKER                                            1                27
  LIFELONG NON-SMOKER                                       0                24
D263V14, continuous

Clustering(264) Variable = OR52N1 MUTATION ANALYSIS
D264V1, survival
                  sevent
clus2               0  1
  OR52N1 MUTATED    4  1
  OR52N1 WILD-TYPE 95 49
  OR52N1 MUTATED OR52N1 WILD-TYPE 
               5              144 
  OR52N1 MUTATED OR52N1 WILD-TYPE 
               1               49 
$`OR52N1 MUTATED`
TCGA-05-4396 TCGA-05-4424 TCGA-05-5420 TCGA-44-6778 TCGA-50-5066 
        9.96        30.02         1.02        36.49         9.76 

$`OR52N1 WILD-TYPE`
TCGA-05-4249 TCGA-05-4250 TCGA-05-4382 TCGA-05-4384 TCGA-05-4390 TCGA-05-4397 
       38.07         3.98        19.92        14.01        37.02        24.03 
TCGA-05-4398 TCGA-05-4402 TCGA-05-4405 TCGA-05-4415 TCGA-05-4417 TCGA-05-4418 
       47.05         8.02        20.05         2.96        14.93         8.98 
TCGA-05-4420 TCGA-05-4426 TCGA-05-4427 TCGA-05-4430 TCGA-05-4432 TCGA-05-4433 
       29.95        26.01        26.01        25.02        25.02        24.00 
TCGA-05-4434 TCGA-05-5423 TCGA-05-5425 TCGA-05-5429 TCGA-05-5715 TCGA-35-3615 
       15.02         4.96         2.96         0.99         2.04         0.46 
TCGA-35-4122 TCGA-35-4123 TCGA-35-5375 TCGA-38-4625 TCGA-38-4626 TCGA-38-4627 
        7.36         5.95         8.68        47.61        85.32        37.71 
TCGA-38-4628 TCGA-38-4629 TCGA-38-4630 TCGA-38-4631 TCGA-38-4632 TCGA-38-6178 
       49.02        28.37        35.28        11.64        44.61         5.19 
TCGA-44-2655 TCGA-44-2656 TCGA-44-2657 TCGA-44-2659 TCGA-44-2661 TCGA-44-2662 
       18.87        19.10        13.15        17.39         3.39        15.78 
TCGA-44-2665 TCGA-44-2666 TCGA-44-2668 TCGA-44-3396 TCGA-44-3398 TCGA-44-3918 
       13.15         3.19         8.09        10.22         8.32         6.44 
TCGA-44-3919 TCGA-44-4112 TCGA-44-5643 TCGA-44-5645 TCGA-44-6144 TCGA-44-6145 
        6.21         4.60         3.48         6.84         0.30         3.35 
TCGA-44-6146 TCGA-44-6147 TCGA-44-6148 TCGA-44-6774 TCGA-44-6775 TCGA-44-6776 
        9.93         7.76         3.12         5.42         2.70        63.72 
TCGA-44-6777 TCGA-44-6779 TCGA-49-4486 TCGA-49-4487 TCGA-49-4488 TCGA-49-4490 
       32.45        16.41        76.21        28.11        28.57        12.66 
TCGA-49-4494 TCGA-49-4501 TCGA-49-4505 TCGA-49-4506 TCGA-49-4507 TCGA-49-4510 
       35.54        46.72        14.07        32.84         8.81        29.46 
TCGA-49-4512 TCGA-49-4514 TCGA-49-6742 TCGA-49-6743 TCGA-49-6744 TCGA-49-6745 
       29.75        43.20        15.02        12.13        12.99         4.93 
TCGA-50-5044 TCGA-50-5045 TCGA-50-5049 TCGA-50-5051 TCGA-50-5055 TCGA-50-5068 
       20.48        71.47        48.82        14.96        25.81        49.28 
TCGA-50-5072 TCGA-50-5930 TCGA-50-5931 TCGA-50-5932 TCGA-50-5933 TCGA-50-5935 
        8.05         9.27         8.78        35.87        77.88        21.47 
TCGA-50-5936 TCGA-50-5939 TCGA-50-5941 TCGA-50-5942 TCGA-50-5944 TCGA-50-5946 
        8.45        15.12         9.37         4.44        12.26        11.47 
TCGA-50-6590 TCGA-50-6591 TCGA-50-6592 TCGA-50-6593 TCGA-50-6594 TCGA-50-6595 
       42.31         3.88        25.51        11.05        12.16         6.21 
TCGA-50-6597 TCGA-55-1592 TCGA-55-1594 TCGA-55-1595 TCGA-55-1596 TCGA-55-5899 
       33.37        23.05        38.73        48.62        45.17         2.86 
TCGA-55-6543 TCGA-55-6642 TCGA-55-6712 TCGA-64-1676 TCGA-64-1677 TCGA-64-1678 
        0.07        32.61         0.79        56.81        20.65        39.09 
TCGA-64-1680 TCGA-64-5774 TCGA-64-5775 TCGA-64-5778 TCGA-64-5779 TCGA-64-5781 
       37.02        83.84         0.10        30.44        16.67        39.52 
TCGA-64-5815 TCGA-67-3770 TCGA-67-3771 TCGA-67-3772 TCGA-67-3773 TCGA-67-3774 
        7.33         0.99         1.97         0.59         2.04         0.59 
TCGA-67-6215 TCGA-67-6216 TCGA-67-6217 TCGA-71-6725 TCGA-73-4658 TCGA-73-4659 
        0.89         0.69        13.87         2.01        52.57        23.38 
TCGA-73-4662 TCGA-73-4666 TCGA-73-4668 TCGA-73-4670 TCGA-73-4675 TCGA-73-4676 
       29.95        20.28        15.35         0.46         1.32         4.01 
TCGA-73-4677 TCGA-91-6828 TCGA-91-6829 TCGA-91-6831 TCGA-91-6835 TCGA-91-6836 
        1.25         1.22        41.33         1.28         1.15         0.36 

  OR52N1 MUTATED OR52N1 WILD-TYPE 
            1.02             0.07 
  OR52N1 MUTATED OR52N1 WILD-TYPE 
           36.49            85.32 
  OR52N1 MUTATED OR52N1 WILD-TYPE 
            9.96            13.94 
[1] "1.0 - 36.5 (10.0)" "0.1 - 85.3 (13.9)"
      TCGA-05-4249       TCGA-05-4250       TCGA-05-4382       TCGA-05-4384 
"OR52N1 WILD-TYPE" "OR52N1 WILD-TYPE" "OR52N1 WILD-TYPE" "OR52N1 WILD-TYPE" 
      TCGA-05-4390       TCGA-05-4396       TCGA-05-4397       TCGA-05-4398 
"OR52N1 WILD-TYPE"   "OR52N1 MUTATED" "OR52N1 WILD-TYPE" "OR52N1 WILD-TYPE" 
      TCGA-05-4402       TCGA-05-4405       TCGA-05-4415       TCGA-05-4417 
"OR52N1 WILD-TYPE" "OR52N1 WILD-TYPE" "OR52N1 WILD-TYPE" "OR52N1 WILD-TYPE" 
      TCGA-05-4418       TCGA-05-4420       TCGA-05-4424       TCGA-05-4426 
"OR52N1 WILD-TYPE" "OR52N1 WILD-TYPE"   "OR52N1 MUTATED" "OR52N1 WILD-TYPE" 
      TCGA-05-4427       TCGA-05-4430       TCGA-05-4432       TCGA-05-4433 
"OR52N1 WILD-TYPE" "OR52N1 WILD-TYPE" "OR52N1 WILD-TYPE" "OR52N1 WILD-TYPE" 
      TCGA-05-4434       TCGA-05-5420       TCGA-05-5423       TCGA-05-5425 
"OR52N1 WILD-TYPE"   "OR52N1 MUTATED" "OR52N1 WILD-TYPE" "OR52N1 WILD-TYPE" 
      TCGA-05-5429       TCGA-05-5715       TCGA-35-3615       TCGA-35-4122 
"OR52N1 WILD-TYPE" "OR52N1 WILD-TYPE" "OR52N1 WILD-TYPE" "OR52N1 WILD-TYPE" 
      TCGA-35-4123       TCGA-35-5375       TCGA-38-4625       TCGA-38-4626 
"OR52N1 WILD-TYPE" "OR52N1 WILD-TYPE" "OR52N1 WILD-TYPE" "OR52N1 WILD-TYPE" 
      TCGA-38-4627       TCGA-38-4628       TCGA-38-4629       TCGA-38-4630 
"OR52N1 WILD-TYPE" "OR52N1 WILD-TYPE" "OR52N1 WILD-TYPE" "OR52N1 WILD-TYPE" 
      TCGA-38-4631       TCGA-38-4632       TCGA-38-6178       TCGA-44-2655 
"OR52N1 WILD-TYPE" "OR52N1 WILD-TYPE" "OR52N1 WILD-TYPE" "OR52N1 WILD-TYPE" 
      TCGA-44-2656       TCGA-44-2657       TCGA-44-2659       TCGA-44-2661 
"OR52N1 WILD-TYPE" "OR52N1 WILD-TYPE" "OR52N1 WILD-TYPE" "OR52N1 WILD-TYPE" 
      TCGA-44-2662       TCGA-44-2665       TCGA-44-2666       TCGA-44-2668 
"OR52N1 WILD-TYPE" "OR52N1 WILD-TYPE" "OR52N1 WILD-TYPE" "OR52N1 WILD-TYPE" 
      TCGA-44-3396       TCGA-44-3398       TCGA-44-3918       TCGA-44-3919 
"OR52N1 WILD-TYPE" "OR52N1 WILD-TYPE" "OR52N1 WILD-TYPE" "OR52N1 WILD-TYPE" 
      TCGA-44-4112       TCGA-44-5643       TCGA-44-5645       TCGA-44-6144 
"OR52N1 WILD-TYPE" "OR52N1 WILD-TYPE" "OR52N1 WILD-TYPE" "OR52N1 WILD-TYPE" 
      TCGA-44-6145       TCGA-44-6146       TCGA-44-6147       TCGA-44-6148 
"OR52N1 WILD-TYPE" "OR52N1 WILD-TYPE" "OR52N1 WILD-TYPE" "OR52N1 WILD-TYPE" 
      TCGA-44-6774       TCGA-44-6775       TCGA-44-6776       TCGA-44-6777 
"OR52N1 WILD-TYPE" "OR52N1 WILD-TYPE" "OR52N1 WILD-TYPE" "OR52N1 WILD-TYPE" 
      TCGA-44-6778       TCGA-44-6779       TCGA-49-4486       TCGA-49-4487 
  "OR52N1 MUTATED" "OR52N1 WILD-TYPE" "OR52N1 WILD-TYPE" "OR52N1 WILD-TYPE" 
      TCGA-49-4488       TCGA-49-4490       TCGA-49-4494       TCGA-49-4501 
"OR52N1 WILD-TYPE" "OR52N1 WILD-TYPE" "OR52N1 WILD-TYPE" "OR52N1 WILD-TYPE" 
      TCGA-49-4505       TCGA-49-4506       TCGA-49-4507       TCGA-49-4510 
"OR52N1 WILD-TYPE" "OR52N1 WILD-TYPE" "OR52N1 WILD-TYPE" "OR52N1 WILD-TYPE" 
      TCGA-49-4512       TCGA-49-4514       TCGA-49-6742       TCGA-49-6743 
"OR52N1 WILD-TYPE" "OR52N1 WILD-TYPE" "OR52N1 WILD-TYPE" "OR52N1 WILD-TYPE" 
      TCGA-49-6744       TCGA-49-6745       TCGA-50-5044       TCGA-50-5045 
"OR52N1 WILD-TYPE" "OR52N1 WILD-TYPE" "OR52N1 WILD-TYPE" "OR52N1 WILD-TYPE" 
      TCGA-50-5049       TCGA-50-5051       TCGA-50-5055       TCGA-50-5066 
"OR52N1 WILD-TYPE" "OR52N1 WILD-TYPE" "OR52N1 WILD-TYPE"   "OR52N1 MUTATED" 
      TCGA-50-5068       TCGA-50-5072       TCGA-50-5930       TCGA-50-5931 
"OR52N1 WILD-TYPE" "OR52N1 WILD-TYPE" "OR52N1 WILD-TYPE" "OR52N1 WILD-TYPE" 
      TCGA-50-5932       TCGA-50-5933       TCGA-50-5935       TCGA-50-5936 
"OR52N1 WILD-TYPE" "OR52N1 WILD-TYPE" "OR52N1 WILD-TYPE" "OR52N1 WILD-TYPE" 
      TCGA-50-5939       TCGA-50-5941       TCGA-50-5942       TCGA-50-5944 
"OR52N1 WILD-TYPE" "OR52N1 WILD-TYPE" "OR52N1 WILD-TYPE" "OR52N1 WILD-TYPE" 
      TCGA-50-5946       TCGA-50-6590       TCGA-50-6591       TCGA-50-6592 
"OR52N1 WILD-TYPE" "OR52N1 WILD-TYPE" "OR52N1 WILD-TYPE" "OR52N1 WILD-TYPE" 
      TCGA-50-6593       TCGA-50-6594       TCGA-50-6595       TCGA-50-6597 
"OR52N1 WILD-TYPE" "OR52N1 WILD-TYPE" "OR52N1 WILD-TYPE" "OR52N1 WILD-TYPE" 
      TCGA-55-1592       TCGA-55-1594       TCGA-55-1595       TCGA-55-1596 
"OR52N1 WILD-TYPE" "OR52N1 WILD-TYPE" "OR52N1 WILD-TYPE" "OR52N1 WILD-TYPE" 
      TCGA-55-5899       TCGA-55-6543       TCGA-55-6642       TCGA-55-6712 
"OR52N1 WILD-TYPE" "OR52N1 WILD-TYPE" "OR52N1 WILD-TYPE" "OR52N1 WILD-TYPE" 
      TCGA-64-1676       TCGA-64-1677       TCGA-64-1678       TCGA-64-1680 
"OR52N1 WILD-TYPE" "OR52N1 WILD-TYPE" "OR52N1 WILD-TYPE" "OR52N1 WILD-TYPE" 
      TCGA-64-5774       TCGA-64-5775       TCGA-64-5778       TCGA-64-5779 
"OR52N1 WILD-TYPE" "OR52N1 WILD-TYPE" "OR52N1 WILD-TYPE" "OR52N1 WILD-TYPE" 
      TCGA-64-5781       TCGA-64-5815       TCGA-67-3770       TCGA-67-3771 
"OR52N1 WILD-TYPE" "OR52N1 WILD-TYPE" "OR52N1 WILD-TYPE" "OR52N1 WILD-TYPE" 
      TCGA-67-3772       TCGA-67-3773       TCGA-67-3774       TCGA-67-6215 
"OR52N1 WILD-TYPE" "OR52N1 WILD-TYPE" "OR52N1 WILD-TYPE" "OR52N1 WILD-TYPE" 
      TCGA-67-6216       TCGA-67-6217       TCGA-71-6725       TCGA-73-4658 
"OR52N1 WILD-TYPE" "OR52N1 WILD-TYPE" "OR52N1 WILD-TYPE" "OR52N1 WILD-TYPE" 
      TCGA-73-4659       TCGA-73-4662       TCGA-73-4666       TCGA-73-4668 
"OR52N1 WILD-TYPE" "OR52N1 WILD-TYPE" "OR52N1 WILD-TYPE" "OR52N1 WILD-TYPE" 
      TCGA-73-4670       TCGA-73-4675       TCGA-73-4676       TCGA-73-4677 
"OR52N1 WILD-TYPE" "OR52N1 WILD-TYPE" "OR52N1 WILD-TYPE" "OR52N1 WILD-TYPE" 
      TCGA-91-6828       TCGA-91-6829       TCGA-91-6831       TCGA-91-6835 
"OR52N1 WILD-TYPE" "OR52N1 WILD-TYPE" "OR52N1 WILD-TYPE" "OR52N1 WILD-TYPE" 
      TCGA-91-6836 
"OR52N1 WILD-TYPE" 
      TCGA-05-4249       TCGA-05-4250       TCGA-05-4382       TCGA-05-4384 
"OR52N1 WILD-TYPE" "OR52N1 WILD-TYPE" "OR52N1 WILD-TYPE" "OR52N1 WILD-TYPE" 
      TCGA-05-4390       TCGA-05-4396       TCGA-05-4397       TCGA-05-4398 
"OR52N1 WILD-TYPE"   "OR52N1 MUTATED" "OR52N1 WILD-TYPE" "OR52N1 WILD-TYPE" 
      TCGA-05-4402       TCGA-05-4405       TCGA-05-4415       TCGA-05-4417 
"OR52N1 WILD-TYPE" "OR52N1 WILD-TYPE" "OR52N1 WILD-TYPE" "OR52N1 WILD-TYPE" 
      TCGA-05-4418       TCGA-05-4420       TCGA-05-4424       TCGA-05-4426 
"OR52N1 WILD-TYPE" "OR52N1 WILD-TYPE"   "OR52N1 MUTATED" "OR52N1 WILD-TYPE" 
      TCGA-05-4427       TCGA-05-4430       TCGA-05-4432       TCGA-05-4433 
"OR52N1 WILD-TYPE" "OR52N1 WILD-TYPE" "OR52N1 WILD-TYPE" "OR52N1 WILD-TYPE" 
      TCGA-05-4434       TCGA-05-5420       TCGA-05-5423       TCGA-05-5425 
"OR52N1 WILD-TYPE"   "OR52N1 MUTATED" "OR52N1 WILD-TYPE" "OR52N1 WILD-TYPE" 
      TCGA-05-5429       TCGA-05-5715       TCGA-35-3615       TCGA-35-4122 
"OR52N1 WILD-TYPE" "OR52N1 WILD-TYPE" "OR52N1 WILD-TYPE" "OR52N1 WILD-TYPE" 
      TCGA-35-4123       TCGA-35-5375       TCGA-38-4625       TCGA-38-4626 
"OR52N1 WILD-TYPE" "OR52N1 WILD-TYPE" "OR52N1 WILD-TYPE" "OR52N1 WILD-TYPE" 
      TCGA-38-4627       TCGA-38-4628       TCGA-38-4629       TCGA-38-4630 
"OR52N1 WILD-TYPE" "OR52N1 WILD-TYPE" "OR52N1 WILD-TYPE" "OR52N1 WILD-TYPE" 
      TCGA-38-4631       TCGA-38-4632       TCGA-38-6178       TCGA-44-2655 
"OR52N1 WILD-TYPE" "OR52N1 WILD-TYPE" "OR52N1 WILD-TYPE" "OR52N1 WILD-TYPE" 
      TCGA-44-2656       TCGA-44-2657       TCGA-44-2659       TCGA-44-2661 
"OR52N1 WILD-TYPE" "OR52N1 WILD-TYPE" "OR52N1 WILD-TYPE" "OR52N1 WILD-TYPE" 
      TCGA-44-2662       TCGA-44-2665       TCGA-44-2666       TCGA-44-2668 
"OR52N1 WILD-TYPE" "OR52N1 WILD-TYPE" "OR52N1 WILD-TYPE" "OR52N1 WILD-TYPE" 
      TCGA-44-3396       TCGA-44-3398       TCGA-44-3918       TCGA-44-3919 
"OR52N1 WILD-TYPE" "OR52N1 WILD-TYPE" "OR52N1 WILD-TYPE" "OR52N1 WILD-TYPE" 
      TCGA-44-4112       TCGA-44-5643       TCGA-44-5645       TCGA-44-6144 
"OR52N1 WILD-TYPE" "OR52N1 WILD-TYPE" "OR52N1 WILD-TYPE" "OR52N1 WILD-TYPE" 
      TCGA-44-6145       TCGA-44-6146       TCGA-44-6147       TCGA-44-6148 
"OR52N1 WILD-TYPE" "OR52N1 WILD-TYPE" "OR52N1 WILD-TYPE" "OR52N1 WILD-TYPE" 
      TCGA-44-6774       TCGA-44-6775       TCGA-44-6776       TCGA-44-6777 
"OR52N1 WILD-TYPE" "OR52N1 WILD-TYPE" "OR52N1 WILD-TYPE" "OR52N1 WILD-TYPE" 
      TCGA-44-6778       TCGA-44-6779       TCGA-49-4486       TCGA-49-4487 
  "OR52N1 MUTATED" "OR52N1 WILD-TYPE" "OR52N1 WILD-TYPE" "OR52N1 WILD-TYPE" 
      TCGA-49-4488       TCGA-49-4490       TCGA-49-4494       TCGA-49-4501 
"OR52N1 WILD-TYPE" "OR52N1 WILD-TYPE" "OR52N1 WILD-TYPE" "OR52N1 WILD-TYPE" 
      TCGA-49-4505       TCGA-49-4506       TCGA-49-4507       TCGA-49-4510 
"OR52N1 WILD-TYPE" "OR52N1 WILD-TYPE" "OR52N1 WILD-TYPE" "OR52N1 WILD-TYPE" 
      TCGA-49-4512       TCGA-49-4514       TCGA-49-6742       TCGA-49-6743 
"OR52N1 WILD-TYPE" "OR52N1 WILD-TYPE" "OR52N1 WILD-TYPE" "OR52N1 WILD-TYPE" 
      TCGA-49-6744       TCGA-49-6745       TCGA-50-5044       TCGA-50-5045 
"OR52N1 WILD-TYPE" "OR52N1 WILD-TYPE" "OR52N1 WILD-TYPE" "OR52N1 WILD-TYPE" 
      TCGA-50-5049       TCGA-50-5051       TCGA-50-5055       TCGA-50-5066 
"OR52N1 WILD-TYPE" "OR52N1 WILD-TYPE" "OR52N1 WILD-TYPE"   "OR52N1 MUTATED" 
      TCGA-50-5068       TCGA-50-5072       TCGA-50-5930       TCGA-50-5931 
"OR52N1 WILD-TYPE" "OR52N1 WILD-TYPE" "OR52N1 WILD-TYPE" "OR52N1 WILD-TYPE" 
      TCGA-50-5932       TCGA-50-5933       TCGA-50-5935       TCGA-50-5936 
"OR52N1 WILD-TYPE" "OR52N1 WILD-TYPE" "OR52N1 WILD-TYPE" "OR52N1 WILD-TYPE" 
      TCGA-50-5939       TCGA-50-5941       TCGA-50-5942       TCGA-50-5944 
"OR52N1 WILD-TYPE" "OR52N1 WILD-TYPE" "OR52N1 WILD-TYPE" "OR52N1 WILD-TYPE" 
      TCGA-50-5946       TCGA-50-6590       TCGA-50-6591       TCGA-50-6592 
"OR52N1 WILD-TYPE" "OR52N1 WILD-TYPE" "OR52N1 WILD-TYPE" "OR52N1 WILD-TYPE" 
      TCGA-50-6593       TCGA-50-6594       TCGA-50-6595       TCGA-50-6597 
"OR52N1 WILD-TYPE" "OR52N1 WILD-TYPE" "OR52N1 WILD-TYPE" "OR52N1 WILD-TYPE" 
      TCGA-55-1592       TCGA-55-1594       TCGA-55-1595       TCGA-55-1596 
"OR52N1 WILD-TYPE" "OR52N1 WILD-TYPE" "OR52N1 WILD-TYPE" "OR52N1 WILD-TYPE" 
      TCGA-55-5899       TCGA-55-6543       TCGA-55-6642       TCGA-55-6712 
"OR52N1 WILD-TYPE" "OR52N1 WILD-TYPE" "OR52N1 WILD-TYPE" "OR52N1 WILD-TYPE" 
      TCGA-64-1676       TCGA-64-1677       TCGA-64-1678       TCGA-64-1680 
"OR52N1 WILD-TYPE" "OR52N1 WILD-TYPE" "OR52N1 WILD-TYPE" "OR52N1 WILD-TYPE" 
      TCGA-64-5774       TCGA-64-5775       TCGA-64-5778       TCGA-64-5779 
"OR52N1 WILD-TYPE" "OR52N1 WILD-TYPE" "OR52N1 WILD-TYPE" "OR52N1 WILD-TYPE" 
      TCGA-64-5781       TCGA-64-5815       TCGA-67-3770       TCGA-67-3771 
"OR52N1 WILD-TYPE" "OR52N1 WILD-TYPE" "OR52N1 WILD-TYPE" "OR52N1 WILD-TYPE" 
      TCGA-67-3772       TCGA-67-3773       TCGA-67-3774       TCGA-67-6215 
"OR52N1 WILD-TYPE" "OR52N1 WILD-TYPE" "OR52N1 WILD-TYPE" "OR52N1 WILD-TYPE" 
      TCGA-67-6216       TCGA-67-6217       TCGA-71-6725       TCGA-73-4658 
"OR52N1 WILD-TYPE" "OR52N1 WILD-TYPE" "OR52N1 WILD-TYPE" "OR52N1 WILD-TYPE" 
      TCGA-73-4659       TCGA-73-4662       TCGA-73-4666       TCGA-73-4668 
"OR52N1 WILD-TYPE" "OR52N1 WILD-TYPE" "OR52N1 WILD-TYPE" "OR52N1 WILD-TYPE" 
      TCGA-73-4670       TCGA-73-4675       TCGA-73-4676       TCGA-73-4677 
"OR52N1 WILD-TYPE" "OR52N1 WILD-TYPE" "OR52N1 WILD-TYPE" "OR52N1 WILD-TYPE" 
      TCGA-91-6828       TCGA-91-6829       TCGA-91-6831       TCGA-91-6835 
"OR52N1 WILD-TYPE" "OR52N1 WILD-TYPE" "OR52N1 WILD-TYPE" "OR52N1 WILD-TYPE" 
      TCGA-91-6836 
"OR52N1 WILD-TYPE" 
      TCGA-05-4249       TCGA-05-4250       TCGA-05-4382       TCGA-05-4384 
"OR52N1 WILD-TYPE" "OR52N1 WILD-TYPE" "OR52N1 WILD-TYPE" "OR52N1 WILD-TYPE" 
      TCGA-05-4390       TCGA-05-4396       TCGA-05-4397       TCGA-05-4398 
"OR52N1 WILD-TYPE"   "OR52N1 MUTATED" "OR52N1 WILD-TYPE" "OR52N1 WILD-TYPE" 
      TCGA-05-4402       TCGA-05-4405       TCGA-05-4415       TCGA-05-4417 
"OR52N1 WILD-TYPE" "OR52N1 WILD-TYPE" "OR52N1 WILD-TYPE" "OR52N1 WILD-TYPE" 
      TCGA-05-4418       TCGA-05-4420       TCGA-05-4424       TCGA-05-4426 
"OR52N1 WILD-TYPE" "OR52N1 WILD-TYPE"   "OR52N1 MUTATED" "OR52N1 WILD-TYPE" 
      TCGA-05-4427       TCGA-05-4430       TCGA-05-4432       TCGA-05-4433 
"OR52N1 WILD-TYPE" "OR52N1 WILD-TYPE" "OR52N1 WILD-TYPE" "OR52N1 WILD-TYPE" 
      TCGA-05-4434       TCGA-05-5420       TCGA-05-5423       TCGA-05-5425 
"OR52N1 WILD-TYPE"   "OR52N1 MUTATED" "OR52N1 WILD-TYPE" "OR52N1 WILD-TYPE" 
      TCGA-05-5429       TCGA-05-5715       TCGA-35-3615       TCGA-35-4122 
"OR52N1 WILD-TYPE" "OR52N1 WILD-TYPE" "OR52N1 WILD-TYPE" "OR52N1 WILD-TYPE" 
      TCGA-35-4123       TCGA-35-5375       TCGA-38-4625       TCGA-38-4626 
"OR52N1 WILD-TYPE" "OR52N1 WILD-TYPE" "OR52N1 WILD-TYPE" "OR52N1 WILD-TYPE" 
      TCGA-38-4627       TCGA-38-4628       TCGA-38-4629       TCGA-38-4630 
"OR52N1 WILD-TYPE" "OR52N1 WILD-TYPE" "OR52N1 WILD-TYPE" "OR52N1 WILD-TYPE" 
      TCGA-38-4631       TCGA-38-4632       TCGA-38-6178       TCGA-44-2655 
"OR52N1 WILD-TYPE" "OR52N1 WILD-TYPE" "OR52N1 WILD-TYPE" "OR52N1 WILD-TYPE" 
      TCGA-44-2656       TCGA-44-2657       TCGA-44-2659       TCGA-44-2661 
"OR52N1 WILD-TYPE" "OR52N1 WILD-TYPE" "OR52N1 WILD-TYPE" "OR52N1 WILD-TYPE" 
      TCGA-44-2662       TCGA-44-2665       TCGA-44-2666       TCGA-44-2668 
"OR52N1 WILD-TYPE" "OR52N1 WILD-TYPE" "OR52N1 WILD-TYPE" "OR52N1 WILD-TYPE" 
      TCGA-44-3396       TCGA-44-3398       TCGA-44-3918       TCGA-44-3919 
"OR52N1 WILD-TYPE" "OR52N1 WILD-TYPE" "OR52N1 WILD-TYPE" "OR52N1 WILD-TYPE" 
      TCGA-44-4112       TCGA-44-5643       TCGA-44-5645       TCGA-44-6144 
"OR52N1 WILD-TYPE" "OR52N1 WILD-TYPE" "OR52N1 WILD-TYPE" "OR52N1 WILD-TYPE" 
      TCGA-44-6145       TCGA-44-6146       TCGA-44-6147       TCGA-44-6148 
"OR52N1 WILD-TYPE" "OR52N1 WILD-TYPE" "OR52N1 WILD-TYPE" "OR52N1 WILD-TYPE" 
      TCGA-44-6774       TCGA-44-6775       TCGA-44-6776       TCGA-44-6777 
"OR52N1 WILD-TYPE" "OR52N1 WILD-TYPE" "OR52N1 WILD-TYPE" "OR52N1 WILD-TYPE" 
      TCGA-44-6778       TCGA-44-6779       TCGA-49-4486       TCGA-49-4487 
  "OR52N1 MUTATED" "OR52N1 WILD-TYPE" "OR52N1 WILD-TYPE" "OR52N1 WILD-TYPE" 
      TCGA-49-4488       TCGA-49-4490       TCGA-49-4494       TCGA-49-4501 
"OR52N1 WILD-TYPE" "OR52N1 WILD-TYPE" "OR52N1 WILD-TYPE" "OR52N1 WILD-TYPE" 
      TCGA-49-4505       TCGA-49-4506       TCGA-49-4507       TCGA-49-4510 
"OR52N1 WILD-TYPE" "OR52N1 WILD-TYPE" "OR52N1 WILD-TYPE" "OR52N1 WILD-TYPE" 
      TCGA-49-4512       TCGA-49-4514       TCGA-49-6742       TCGA-49-6743 
"OR52N1 WILD-TYPE" "OR52N1 WILD-TYPE" "OR52N1 WILD-TYPE" "OR52N1 WILD-TYPE" 
      TCGA-49-6744       TCGA-49-6745       TCGA-50-5044       TCGA-50-5045 
"OR52N1 WILD-TYPE" "OR52N1 WILD-TYPE" "OR52N1 WILD-TYPE" "OR52N1 WILD-TYPE" 
      TCGA-50-5049       TCGA-50-5051       TCGA-50-5055       TCGA-50-5066 
"OR52N1 WILD-TYPE" "OR52N1 WILD-TYPE" "OR52N1 WILD-TYPE"   "OR52N1 MUTATED" 
      TCGA-50-5068       TCGA-50-5072       TCGA-50-5930       TCGA-50-5931 
"OR52N1 WILD-TYPE" "OR52N1 WILD-TYPE" "OR52N1 WILD-TYPE" "OR52N1 WILD-TYPE" 
      TCGA-50-5932       TCGA-50-5933       TCGA-50-5935       TCGA-50-5936 
"OR52N1 WILD-TYPE" "OR52N1 WILD-TYPE" "OR52N1 WILD-TYPE" "OR52N1 WILD-TYPE" 
      TCGA-50-5939       TCGA-50-5941       TCGA-50-5942       TCGA-50-5944 
"OR52N1 WILD-TYPE" "OR52N1 WILD-TYPE" "OR52N1 WILD-TYPE" "OR52N1 WILD-TYPE" 
      TCGA-50-5946       TCGA-50-6590       TCGA-50-6591       TCGA-50-6592 
"OR52N1 WILD-TYPE" "OR52N1 WILD-TYPE" "OR52N1 WILD-TYPE" "OR52N1 WILD-TYPE" 
      TCGA-50-6593       TCGA-50-6594       TCGA-50-6595       TCGA-50-6597 
"OR52N1 WILD-TYPE" "OR52N1 WILD-TYPE" "OR52N1 WILD-TYPE" "OR52N1 WILD-TYPE" 
      TCGA-55-1592       TCGA-55-1594       TCGA-55-1595       TCGA-55-1596 
"OR52N1 WILD-TYPE" "OR52N1 WILD-TYPE" "OR52N1 WILD-TYPE" "OR52N1 WILD-TYPE" 
      TCGA-55-5899       TCGA-55-6543       TCGA-55-6642       TCGA-55-6712 
"OR52N1 WILD-TYPE" "OR52N1 WILD-TYPE" "OR52N1 WILD-TYPE" "OR52N1 WILD-TYPE" 
      TCGA-64-1676       TCGA-64-1677       TCGA-64-1678       TCGA-64-1680 
"OR52N1 WILD-TYPE" "OR52N1 WILD-TYPE" "OR52N1 WILD-TYPE" "OR52N1 WILD-TYPE" 
      TCGA-64-5774       TCGA-64-5775       TCGA-64-5778       TCGA-64-5779 
"OR52N1 WILD-TYPE" "OR52N1 WILD-TYPE" "OR52N1 WILD-TYPE" "OR52N1 WILD-TYPE" 
      TCGA-64-5781       TCGA-64-5815       TCGA-67-3770       TCGA-67-3771 
"OR52N1 WILD-TYPE" "OR52N1 WILD-TYPE" "OR52N1 WILD-TYPE" "OR52N1 WILD-TYPE" 
      TCGA-67-3772       TCGA-67-3773       TCGA-67-3774       TCGA-67-6215 
"OR52N1 WILD-TYPE" "OR52N1 WILD-TYPE" "OR52N1 WILD-TYPE" "OR52N1 WILD-TYPE" 
      TCGA-67-6216       TCGA-67-6217       TCGA-71-6725       TCGA-73-4658 
"OR52N1 WILD-TYPE" "OR52N1 WILD-TYPE" "OR52N1 WILD-TYPE" "OR52N1 WILD-TYPE" 
      TCGA-73-4659       TCGA-73-4662       TCGA-73-4666       TCGA-73-4668 
"OR52N1 WILD-TYPE" "OR52N1 WILD-TYPE" "OR52N1 WILD-TYPE" "OR52N1 WILD-TYPE" 
      TCGA-73-4670       TCGA-73-4675       TCGA-73-4676       TCGA-73-4677 
"OR52N1 WILD-TYPE" "OR52N1 WILD-TYPE" "OR52N1 WILD-TYPE" "OR52N1 WILD-TYPE" 
      TCGA-91-6828       TCGA-91-6829       TCGA-91-6831       TCGA-91-6835 
"OR52N1 WILD-TYPE" "OR52N1 WILD-TYPE" "OR52N1 WILD-TYPE" "OR52N1 WILD-TYPE" 
      TCGA-91-6836 
"OR52N1 WILD-TYPE" 
[1] "hr=" "1.4"
D264V2, continuous
D264V3, binary
[1] "tbl2"
                  cls
clus               [,1] [,2]
  OR52N1 MUTATED      1    5
  OR52N1 WILD-TYPE   92   74
        clus
vv       OR52N1 MUTATED OR52N1 WILD-TYPE
  FEMALE              1               92
  MALE                5               74
D264V4, continuous
D264V5, multiclass
D264V6, multiclass
    clus
vv   OR52N1 MUTATED OR52N1 WILD-TYPE
  T1              1               40
  T2              2              106
  T3              2               12
  T4              1                7
D264V7, multiclass
       clus
vv      OR52N1 MUTATED OR52N1 WILD-TYPE
  N0                 3               92
  N1                 1               36
  N2+N3              2               33
D264V8, multiclass
    clus
vv   OR52N1 MUTATED OR52N1 WILD-TYPE
  M0              5              132
  M1              0                9
  MX              1               21
D264V9, multiclass
     clus
vv    OR52N1 MUTATED OR52N1 WILD-TYPE
  I                2               86
  II               1               32
  III              3               36
  IV               0                9
D264V10, binary
[1] "tbl2"
                  cls
clus               [,1] [,2]
  OR52N1 MUTATED      0    6
  OR52N1 WILD-TYPE   16  150
     clus
vv    OR52N1 MUTATED OR52N1 WILD-TYPE
  NO               0               16
  YES              6              150
D264V11, continuous
D264V12, continuous
D264V13, multiclass
                                             clus
vv                                            OR52N1 MUTATED OR52N1 WILD-TYPE
  CURRENT REFORMED SMOKER FOR < OR = 15 YEARS              4               58
  CURRENT REFORMED SMOKER FOR > 15 YEARS                   1               45
  CURRENT SMOKER                                           0               28
  LIFELONG NON-SMOKER                                      1               23
D264V14, continuous

Clustering(265) Variable = OR5K3 MUTATION ANALYSIS
D265V1, survival
                 sevent
clus2              0  1
  OR5K3 MUTATED    6  1
  OR5K3 WILD-TYPE 93 49
  OR5K3 MUTATED OR5K3 WILD-TYPE 
              7             142 
  OR5K3 MUTATED OR5K3 WILD-TYPE 
              1              49 
$`OR5K3 MUTATED`
TCGA-05-4397 TCGA-44-2656 TCGA-44-3918 TCGA-44-6145 TCGA-49-4514 TCGA-50-5049 
       24.03        19.10         6.44         3.35        43.20        48.82 
TCGA-91-6828 
        1.22 

$`OR5K3 WILD-TYPE`
TCGA-05-4249 TCGA-05-4250 TCGA-05-4382 TCGA-05-4384 TCGA-05-4390 TCGA-05-4396 
       38.07         3.98        19.92        14.01        37.02         9.96 
TCGA-05-4398 TCGA-05-4402 TCGA-05-4405 TCGA-05-4415 TCGA-05-4417 TCGA-05-4418 
       47.05         8.02        20.05         2.96        14.93         8.98 
TCGA-05-4420 TCGA-05-4424 TCGA-05-4426 TCGA-05-4427 TCGA-05-4430 TCGA-05-4432 
       29.95        30.02        26.01        26.01        25.02        25.02 
TCGA-05-4433 TCGA-05-4434 TCGA-05-5420 TCGA-05-5423 TCGA-05-5425 TCGA-05-5429 
       24.00        15.02         1.02         4.96         2.96         0.99 
TCGA-05-5715 TCGA-35-3615 TCGA-35-4122 TCGA-35-4123 TCGA-35-5375 TCGA-38-4625 
        2.04         0.46         7.36         5.95         8.68        47.61 
TCGA-38-4626 TCGA-38-4627 TCGA-38-4628 TCGA-38-4629 TCGA-38-4630 TCGA-38-4631 
       85.32        37.71        49.02        28.37        35.28        11.64 
TCGA-38-4632 TCGA-38-6178 TCGA-44-2655 TCGA-44-2657 TCGA-44-2659 TCGA-44-2661 
       44.61         5.19        18.87        13.15        17.39         3.39 
TCGA-44-2662 TCGA-44-2665 TCGA-44-2666 TCGA-44-2668 TCGA-44-3396 TCGA-44-3398 
       15.78        13.15         3.19         8.09        10.22         8.32 
TCGA-44-3919 TCGA-44-4112 TCGA-44-5643 TCGA-44-5645 TCGA-44-6144 TCGA-44-6146 
        6.21         4.60         3.48         6.84         0.30         9.93 
TCGA-44-6147 TCGA-44-6148 TCGA-44-6774 TCGA-44-6775 TCGA-44-6776 TCGA-44-6777 
        7.76         3.12         5.42         2.70        63.72        32.45 
TCGA-44-6778 TCGA-44-6779 TCGA-49-4486 TCGA-49-4487 TCGA-49-4488 TCGA-49-4490 
       36.49        16.41        76.21        28.11        28.57        12.66 
TCGA-49-4494 TCGA-49-4501 TCGA-49-4505 TCGA-49-4506 TCGA-49-4507 TCGA-49-4510 
       35.54        46.72        14.07        32.84         8.81        29.46 
TCGA-49-4512 TCGA-49-6742 TCGA-49-6743 TCGA-49-6744 TCGA-49-6745 TCGA-50-5044 
       29.75        15.02        12.13        12.99         4.93        20.48 
TCGA-50-5045 TCGA-50-5051 TCGA-50-5055 TCGA-50-5066 TCGA-50-5068 TCGA-50-5072 
       71.47        14.96        25.81         9.76        49.28         8.05 
TCGA-50-5930 TCGA-50-5931 TCGA-50-5932 TCGA-50-5933 TCGA-50-5935 TCGA-50-5936 
        9.27         8.78        35.87        77.88        21.47         8.45 
TCGA-50-5939 TCGA-50-5941 TCGA-50-5942 TCGA-50-5944 TCGA-50-5946 TCGA-50-6590 
       15.12         9.37         4.44        12.26        11.47        42.31 
TCGA-50-6591 TCGA-50-6592 TCGA-50-6593 TCGA-50-6594 TCGA-50-6595 TCGA-50-6597 
        3.88        25.51        11.05        12.16         6.21        33.37 
TCGA-55-1592 TCGA-55-1594 TCGA-55-1595 TCGA-55-1596 TCGA-55-5899 TCGA-55-6543 
       23.05        38.73        48.62        45.17         2.86         0.07 
TCGA-55-6642 TCGA-55-6712 TCGA-64-1676 TCGA-64-1677 TCGA-64-1678 TCGA-64-1680 
       32.61         0.79        56.81        20.65        39.09        37.02 
TCGA-64-5774 TCGA-64-5775 TCGA-64-5778 TCGA-64-5779 TCGA-64-5781 TCGA-64-5815 
       83.84         0.10        30.44        16.67        39.52         7.33 
TCGA-67-3770 TCGA-67-3771 TCGA-67-3772 TCGA-67-3773 TCGA-67-3774 TCGA-67-6215 
        0.99         1.97         0.59         2.04         0.59         0.89 
TCGA-67-6216 TCGA-67-6217 TCGA-71-6725 TCGA-73-4658 TCGA-73-4659 TCGA-73-4662 
        0.69        13.87         2.01        52.57        23.38        29.95 
TCGA-73-4666 TCGA-73-4668 TCGA-73-4670 TCGA-73-4675 TCGA-73-4676 TCGA-73-4677 
       20.28        15.35         0.46         1.32         4.01         1.25 
TCGA-91-6829 TCGA-91-6831 TCGA-91-6835 TCGA-91-6836 
       41.33         1.28         1.15         0.36 

  OR5K3 MUTATED OR5K3 WILD-TYPE 
           1.22            0.07 
  OR5K3 MUTATED OR5K3 WILD-TYPE 
          48.82           85.32 
  OR5K3 MUTATED OR5K3 WILD-TYPE 
          19.10           13.51 
[1] "1.2 - 48.8 (19.1)" "0.1 - 85.3 (13.5)"
     TCGA-05-4249      TCGA-05-4250      TCGA-05-4382      TCGA-05-4384 
"OR5K3 WILD-TYPE" "OR5K3 WILD-TYPE" "OR5K3 WILD-TYPE" "OR5K3 WILD-TYPE" 
     TCGA-05-4390      TCGA-05-4396      TCGA-05-4397      TCGA-05-4398 
"OR5K3 WILD-TYPE" "OR5K3 WILD-TYPE"   "OR5K3 MUTATED" "OR5K3 WILD-TYPE" 
     TCGA-05-4402      TCGA-05-4405      TCGA-05-4415      TCGA-05-4417 
"OR5K3 WILD-TYPE" "OR5K3 WILD-TYPE" "OR5K3 WILD-TYPE" "OR5K3 WILD-TYPE" 
     TCGA-05-4418      TCGA-05-4420      TCGA-05-4424      TCGA-05-4426 
"OR5K3 WILD-TYPE" "OR5K3 WILD-TYPE" "OR5K3 WILD-TYPE" "OR5K3 WILD-TYPE" 
     TCGA-05-4427      TCGA-05-4430      TCGA-05-4432      TCGA-05-4433 
"OR5K3 WILD-TYPE" "OR5K3 WILD-TYPE" "OR5K3 WILD-TYPE" "OR5K3 WILD-TYPE" 
     TCGA-05-4434      TCGA-05-5420      TCGA-05-5423      TCGA-05-5425 
"OR5K3 WILD-TYPE" "OR5K3 WILD-TYPE" "OR5K3 WILD-TYPE" "OR5K3 WILD-TYPE" 
     TCGA-05-5429      TCGA-05-5715      TCGA-35-3615      TCGA-35-4122 
"OR5K3 WILD-TYPE" "OR5K3 WILD-TYPE" "OR5K3 WILD-TYPE" "OR5K3 WILD-TYPE" 
     TCGA-35-4123      TCGA-35-5375      TCGA-38-4625      TCGA-38-4626 
"OR5K3 WILD-TYPE" "OR5K3 WILD-TYPE" "OR5K3 WILD-TYPE" "OR5K3 WILD-TYPE" 
     TCGA-38-4627      TCGA-38-4628      TCGA-38-4629      TCGA-38-4630 
"OR5K3 WILD-TYPE" "OR5K3 WILD-TYPE" "OR5K3 WILD-TYPE" "OR5K3 WILD-TYPE" 
     TCGA-38-4631      TCGA-38-4632      TCGA-38-6178      TCGA-44-2655 
"OR5K3 WILD-TYPE" "OR5K3 WILD-TYPE" "OR5K3 WILD-TYPE" "OR5K3 WILD-TYPE" 
     TCGA-44-2656      TCGA-44-2657      TCGA-44-2659      TCGA-44-2661 
  "OR5K3 MUTATED" "OR5K3 WILD-TYPE" "OR5K3 WILD-TYPE" "OR5K3 WILD-TYPE" 
     TCGA-44-2662      TCGA-44-2665      TCGA-44-2666      TCGA-44-2668 
"OR5K3 WILD-TYPE" "OR5K3 WILD-TYPE" "OR5K3 WILD-TYPE" "OR5K3 WILD-TYPE" 
     TCGA-44-3396      TCGA-44-3398      TCGA-44-3918      TCGA-44-3919 
"OR5K3 WILD-TYPE" "OR5K3 WILD-TYPE"   "OR5K3 MUTATED" "OR5K3 WILD-TYPE" 
     TCGA-44-4112      TCGA-44-5643      TCGA-44-5645      TCGA-44-6144 
"OR5K3 WILD-TYPE" "OR5K3 WILD-TYPE" "OR5K3 WILD-TYPE" "OR5K3 WILD-TYPE" 
     TCGA-44-6145      TCGA-44-6146      TCGA-44-6147      TCGA-44-6148 
  "OR5K3 MUTATED" "OR5K3 WILD-TYPE" "OR5K3 WILD-TYPE" "OR5K3 WILD-TYPE" 
     TCGA-44-6774      TCGA-44-6775      TCGA-44-6776      TCGA-44-6777 
"OR5K3 WILD-TYPE" "OR5K3 WILD-TYPE" "OR5K3 WILD-TYPE" "OR5K3 WILD-TYPE" 
     TCGA-44-6778      TCGA-44-6779      TCGA-49-4486      TCGA-49-4487 
"OR5K3 WILD-TYPE" "OR5K3 WILD-TYPE" "OR5K3 WILD-TYPE" "OR5K3 WILD-TYPE" 
     TCGA-49-4488      TCGA-49-4490      TCGA-49-4494      TCGA-49-4501 
"OR5K3 WILD-TYPE" "OR5K3 WILD-TYPE" "OR5K3 WILD-TYPE" "OR5K3 WILD-TYPE" 
     TCGA-49-4505      TCGA-49-4506      TCGA-49-4507      TCGA-49-4510 
"OR5K3 WILD-TYPE" "OR5K3 WILD-TYPE" "OR5K3 WILD-TYPE" "OR5K3 WILD-TYPE" 
     TCGA-49-4512      TCGA-49-4514      TCGA-49-6742      TCGA-49-6743 
"OR5K3 WILD-TYPE"   "OR5K3 MUTATED" "OR5K3 WILD-TYPE" "OR5K3 WILD-TYPE" 
     TCGA-49-6744      TCGA-49-6745      TCGA-50-5044      TCGA-50-5045 
"OR5K3 WILD-TYPE" "OR5K3 WILD-TYPE" "OR5K3 WILD-TYPE" "OR5K3 WILD-TYPE" 
     TCGA-50-5049      TCGA-50-5051      TCGA-50-5055      TCGA-50-5066 
  "OR5K3 MUTATED" "OR5K3 WILD-TYPE" "OR5K3 WILD-TYPE" "OR5K3 WILD-TYPE" 
     TCGA-50-5068      TCGA-50-5072      TCGA-50-5930      TCGA-50-5931 
"OR5K3 WILD-TYPE" "OR5K3 WILD-TYPE" "OR5K3 WILD-TYPE" "OR5K3 WILD-TYPE" 
     TCGA-50-5932      TCGA-50-5933      TCGA-50-5935      TCGA-50-5936 
"OR5K3 WILD-TYPE" "OR5K3 WILD-TYPE" "OR5K3 WILD-TYPE" "OR5K3 WILD-TYPE" 
     TCGA-50-5939      TCGA-50-5941      TCGA-50-5942      TCGA-50-5944 
"OR5K3 WILD-TYPE" "OR5K3 WILD-TYPE" "OR5K3 WILD-TYPE" "OR5K3 WILD-TYPE" 
     TCGA-50-5946      TCGA-50-6590      TCGA-50-6591      TCGA-50-6592 
"OR5K3 WILD-TYPE" "OR5K3 WILD-TYPE" "OR5K3 WILD-TYPE" "OR5K3 WILD-TYPE" 
     TCGA-50-6593      TCGA-50-6594      TCGA-50-6595      TCGA-50-6597 
"OR5K3 WILD-TYPE" "OR5K3 WILD-TYPE" "OR5K3 WILD-TYPE" "OR5K3 WILD-TYPE" 
     TCGA-55-1592      TCGA-55-1594      TCGA-55-1595      TCGA-55-1596 
"OR5K3 WILD-TYPE" "OR5K3 WILD-TYPE" "OR5K3 WILD-TYPE" "OR5K3 WILD-TYPE" 
     TCGA-55-5899      TCGA-55-6543      TCGA-55-6642      TCGA-55-6712 
"OR5K3 WILD-TYPE" "OR5K3 WILD-TYPE" "OR5K3 WILD-TYPE" "OR5K3 WILD-TYPE" 
     TCGA-64-1676      TCGA-64-1677      TCGA-64-1678      TCGA-64-1680 
"OR5K3 WILD-TYPE" "OR5K3 WILD-TYPE" "OR5K3 WILD-TYPE" "OR5K3 WILD-TYPE" 
     TCGA-64-5774      TCGA-64-5775      TCGA-64-5778      TCGA-64-5779 
"OR5K3 WILD-TYPE" "OR5K3 WILD-TYPE" "OR5K3 WILD-TYPE" "OR5K3 WILD-TYPE" 
     TCGA-64-5781      TCGA-64-5815      TCGA-67-3770      TCGA-67-3771 
"OR5K3 WILD-TYPE" "OR5K3 WILD-TYPE" "OR5K3 WILD-TYPE" "OR5K3 WILD-TYPE" 
     TCGA-67-3772      TCGA-67-3773      TCGA-67-3774      TCGA-67-6215 
"OR5K3 WILD-TYPE" "OR5K3 WILD-TYPE" "OR5K3 WILD-TYPE" "OR5K3 WILD-TYPE" 
     TCGA-67-6216      TCGA-67-6217      TCGA-71-6725      TCGA-73-4658 
"OR5K3 WILD-TYPE" "OR5K3 WILD-TYPE" "OR5K3 WILD-TYPE" "OR5K3 WILD-TYPE" 
     TCGA-73-4659      TCGA-73-4662      TCGA-73-4666      TCGA-73-4668 
"OR5K3 WILD-TYPE" "OR5K3 WILD-TYPE" "OR5K3 WILD-TYPE" "OR5K3 WILD-TYPE" 
     TCGA-73-4670      TCGA-73-4675      TCGA-73-4676      TCGA-73-4677 
"OR5K3 WILD-TYPE" "OR5K3 WILD-TYPE" "OR5K3 WILD-TYPE" "OR5K3 WILD-TYPE" 
     TCGA-91-6828      TCGA-91-6829      TCGA-91-6831      TCGA-91-6835 
  "OR5K3 MUTATED" "OR5K3 WILD-TYPE" "OR5K3 WILD-TYPE" "OR5K3 WILD-TYPE" 
     TCGA-91-6836 
"OR5K3 WILD-TYPE" 
     TCGA-05-4249      TCGA-05-4250      TCGA-05-4382      TCGA-05-4384 
"OR5K3 WILD-TYPE" "OR5K3 WILD-TYPE" "OR5K3 WILD-TYPE" "OR5K3 WILD-TYPE" 
     TCGA-05-4390      TCGA-05-4396      TCGA-05-4397      TCGA-05-4398 
"OR5K3 WILD-TYPE" "OR5K3 WILD-TYPE"   "OR5K3 MUTATED" "OR5K3 WILD-TYPE" 
     TCGA-05-4402      TCGA-05-4405      TCGA-05-4415      TCGA-05-4417 
"OR5K3 WILD-TYPE" "OR5K3 WILD-TYPE" "OR5K3 WILD-TYPE" "OR5K3 WILD-TYPE" 
     TCGA-05-4418      TCGA-05-4420      TCGA-05-4424      TCGA-05-4426 
"OR5K3 WILD-TYPE" "OR5K3 WILD-TYPE" "OR5K3 WILD-TYPE" "OR5K3 WILD-TYPE" 
     TCGA-05-4427      TCGA-05-4430      TCGA-05-4432      TCGA-05-4433 
"OR5K3 WILD-TYPE" "OR5K3 WILD-TYPE" "OR5K3 WILD-TYPE" "OR5K3 WILD-TYPE" 
     TCGA-05-4434      TCGA-05-5420      TCGA-05-5423      TCGA-05-5425 
"OR5K3 WILD-TYPE" "OR5K3 WILD-TYPE" "OR5K3 WILD-TYPE" "OR5K3 WILD-TYPE" 
     TCGA-05-5429      TCGA-05-5715      TCGA-35-3615      TCGA-35-4122 
"OR5K3 WILD-TYPE" "OR5K3 WILD-TYPE" "OR5K3 WILD-TYPE" "OR5K3 WILD-TYPE" 
     TCGA-35-4123      TCGA-35-5375      TCGA-38-4625      TCGA-38-4626 
"OR5K3 WILD-TYPE" "OR5K3 WILD-TYPE" "OR5K3 WILD-TYPE" "OR5K3 WILD-TYPE" 
     TCGA-38-4627      TCGA-38-4628      TCGA-38-4629      TCGA-38-4630 
"OR5K3 WILD-TYPE" "OR5K3 WILD-TYPE" "OR5K3 WILD-TYPE" "OR5K3 WILD-TYPE" 
     TCGA-38-4631      TCGA-38-4632      TCGA-38-6178      TCGA-44-2655 
"OR5K3 WILD-TYPE" "OR5K3 WILD-TYPE" "OR5K3 WILD-TYPE" "OR5K3 WILD-TYPE" 
     TCGA-44-2656      TCGA-44-2657      TCGA-44-2659      TCGA-44-2661 
  "OR5K3 MUTATED" "OR5K3 WILD-TYPE" "OR5K3 WILD-TYPE" "OR5K3 WILD-TYPE" 
     TCGA-44-2662      TCGA-44-2665      TCGA-44-2666      TCGA-44-2668 
"OR5K3 WILD-TYPE" "OR5K3 WILD-TYPE" "OR5K3 WILD-TYPE" "OR5K3 WILD-TYPE" 
     TCGA-44-3396      TCGA-44-3398      TCGA-44-3918      TCGA-44-3919 
"OR5K3 WILD-TYPE" "OR5K3 WILD-TYPE"   "OR5K3 MUTATED" "OR5K3 WILD-TYPE" 
     TCGA-44-4112      TCGA-44-5643      TCGA-44-5645      TCGA-44-6144 
"OR5K3 WILD-TYPE" "OR5K3 WILD-TYPE" "OR5K3 WILD-TYPE" "OR5K3 WILD-TYPE" 
     TCGA-44-6145      TCGA-44-6146      TCGA-44-6147      TCGA-44-6148 
  "OR5K3 MUTATED" "OR5K3 WILD-TYPE" "OR5K3 WILD-TYPE" "OR5K3 WILD-TYPE" 
     TCGA-44-6774      TCGA-44-6775      TCGA-44-6776      TCGA-44-6777 
"OR5K3 WILD-TYPE" "OR5K3 WILD-TYPE" "OR5K3 WILD-TYPE" "OR5K3 WILD-TYPE" 
     TCGA-44-6778      TCGA-44-6779      TCGA-49-4486      TCGA-49-4487 
"OR5K3 WILD-TYPE" "OR5K3 WILD-TYPE" "OR5K3 WILD-TYPE" "OR5K3 WILD-TYPE" 
     TCGA-49-4488      TCGA-49-4490      TCGA-49-4494      TCGA-49-4501 
"OR5K3 WILD-TYPE" "OR5K3 WILD-TYPE" "OR5K3 WILD-TYPE" "OR5K3 WILD-TYPE" 
     TCGA-49-4505      TCGA-49-4506      TCGA-49-4507      TCGA-49-4510 
"OR5K3 WILD-TYPE" "OR5K3 WILD-TYPE" "OR5K3 WILD-TYPE" "OR5K3 WILD-TYPE" 
     TCGA-49-4512      TCGA-49-4514      TCGA-49-6742      TCGA-49-6743 
"OR5K3 WILD-TYPE"   "OR5K3 MUTATED" "OR5K3 WILD-TYPE" "OR5K3 WILD-TYPE" 
     TCGA-49-6744      TCGA-49-6745      TCGA-50-5044      TCGA-50-5045 
"OR5K3 WILD-TYPE" "OR5K3 WILD-TYPE" "OR5K3 WILD-TYPE" "OR5K3 WILD-TYPE" 
     TCGA-50-5049      TCGA-50-5051      TCGA-50-5055      TCGA-50-5066 
  "OR5K3 MUTATED" "OR5K3 WILD-TYPE" "OR5K3 WILD-TYPE" "OR5K3 WILD-TYPE" 
     TCGA-50-5068      TCGA-50-5072      TCGA-50-5930      TCGA-50-5931 
"OR5K3 WILD-TYPE" "OR5K3 WILD-TYPE" "OR5K3 WILD-TYPE" "OR5K3 WILD-TYPE" 
     TCGA-50-5932      TCGA-50-5933      TCGA-50-5935      TCGA-50-5936 
"OR5K3 WILD-TYPE" "OR5K3 WILD-TYPE" "OR5K3 WILD-TYPE" "OR5K3 WILD-TYPE" 
     TCGA-50-5939      TCGA-50-5941      TCGA-50-5942      TCGA-50-5944 
"OR5K3 WILD-TYPE" "OR5K3 WILD-TYPE" "OR5K3 WILD-TYPE" "OR5K3 WILD-TYPE" 
     TCGA-50-5946      TCGA-50-6590      TCGA-50-6591      TCGA-50-6592 
"OR5K3 WILD-TYPE" "OR5K3 WILD-TYPE" "OR5K3 WILD-TYPE" "OR5K3 WILD-TYPE" 
     TCGA-50-6593      TCGA-50-6594      TCGA-50-6595      TCGA-50-6597 
"OR5K3 WILD-TYPE" "OR5K3 WILD-TYPE" "OR5K3 WILD-TYPE" "OR5K3 WILD-TYPE" 
     TCGA-55-1592      TCGA-55-1594      TCGA-55-1595      TCGA-55-1596 
"OR5K3 WILD-TYPE" "OR5K3 WILD-TYPE" "OR5K3 WILD-TYPE" "OR5K3 WILD-TYPE" 
     TCGA-55-5899      TCGA-55-6543      TCGA-55-6642      TCGA-55-6712 
"OR5K3 WILD-TYPE" "OR5K3 WILD-TYPE" "OR5K3 WILD-TYPE" "OR5K3 WILD-TYPE" 
     TCGA-64-1676      TCGA-64-1677      TCGA-64-1678      TCGA-64-1680 
"OR5K3 WILD-TYPE" "OR5K3 WILD-TYPE" "OR5K3 WILD-TYPE" "OR5K3 WILD-TYPE" 
     TCGA-64-5774      TCGA-64-5775      TCGA-64-5778      TCGA-64-5779 
"OR5K3 WILD-TYPE" "OR5K3 WILD-TYPE" "OR5K3 WILD-TYPE" "OR5K3 WILD-TYPE" 
     TCGA-64-5781      TCGA-64-5815      TCGA-67-3770      TCGA-67-3771 
"OR5K3 WILD-TYPE" "OR5K3 WILD-TYPE" "OR5K3 WILD-TYPE" "OR5K3 WILD-TYPE" 
     TCGA-67-3772      TCGA-67-3773      TCGA-67-3774      TCGA-67-6215 
"OR5K3 WILD-TYPE" "OR5K3 WILD-TYPE" "OR5K3 WILD-TYPE" "OR5K3 WILD-TYPE" 
     TCGA-67-6216      TCGA-67-6217      TCGA-71-6725      TCGA-73-4658 
"OR5K3 WILD-TYPE" "OR5K3 WILD-TYPE" "OR5K3 WILD-TYPE" "OR5K3 WILD-TYPE" 
     TCGA-73-4659      TCGA-73-4662      TCGA-73-4666      TCGA-73-4668 
"OR5K3 WILD-TYPE" "OR5K3 WILD-TYPE" "OR5K3 WILD-TYPE" "OR5K3 WILD-TYPE" 
     TCGA-73-4670      TCGA-73-4675      TCGA-73-4676      TCGA-73-4677 
"OR5K3 WILD-TYPE" "OR5K3 WILD-TYPE" "OR5K3 WILD-TYPE" "OR5K3 WILD-TYPE" 
     TCGA-91-6828      TCGA-91-6829      TCGA-91-6831      TCGA-91-6835 
  "OR5K3 MUTATED" "OR5K3 WILD-TYPE" "OR5K3 WILD-TYPE" "OR5K3 WILD-TYPE" 
     TCGA-91-6836 
"OR5K3 WILD-TYPE" 
     TCGA-05-4249      TCGA-05-4250      TCGA-05-4382      TCGA-05-4384 
"OR5K3 WILD-TYPE" "OR5K3 WILD-TYPE" "OR5K3 WILD-TYPE" "OR5K3 WILD-TYPE" 
     TCGA-05-4390      TCGA-05-4396      TCGA-05-4397      TCGA-05-4398 
"OR5K3 WILD-TYPE" "OR5K3 WILD-TYPE"   "OR5K3 MUTATED" "OR5K3 WILD-TYPE" 
     TCGA-05-4402      TCGA-05-4405      TCGA-05-4415      TCGA-05-4417 
"OR5K3 WILD-TYPE" "OR5K3 WILD-TYPE" "OR5K3 WILD-TYPE" "OR5K3 WILD-TYPE" 
     TCGA-05-4418      TCGA-05-4420      TCGA-05-4424      TCGA-05-4426 
"OR5K3 WILD-TYPE" "OR5K3 WILD-TYPE" "OR5K3 WILD-TYPE" "OR5K3 WILD-TYPE" 
     TCGA-05-4427      TCGA-05-4430      TCGA-05-4432      TCGA-05-4433 
"OR5K3 WILD-TYPE" "OR5K3 WILD-TYPE" "OR5K3 WILD-TYPE" "OR5K3 WILD-TYPE" 
     TCGA-05-4434      TCGA-05-5420      TCGA-05-5423      TCGA-05-5425 
"OR5K3 WILD-TYPE" "OR5K3 WILD-TYPE" "OR5K3 WILD-TYPE" "OR5K3 WILD-TYPE" 
     TCGA-05-5429      TCGA-05-5715      TCGA-35-3615      TCGA-35-4122 
"OR5K3 WILD-TYPE" "OR5K3 WILD-TYPE" "OR5K3 WILD-TYPE" "OR5K3 WILD-TYPE" 
     TCGA-35-4123      TCGA-35-5375      TCGA-38-4625      TCGA-38-4626 
"OR5K3 WILD-TYPE" "OR5K3 WILD-TYPE" "OR5K3 WILD-TYPE" "OR5K3 WILD-TYPE" 
     TCGA-38-4627      TCGA-38-4628      TCGA-38-4629      TCGA-38-4630 
"OR5K3 WILD-TYPE" "OR5K3 WILD-TYPE" "OR5K3 WILD-TYPE" "OR5K3 WILD-TYPE" 
     TCGA-38-4631      TCGA-38-4632      TCGA-38-6178      TCGA-44-2655 
"OR5K3 WILD-TYPE" "OR5K3 WILD-TYPE" "OR5K3 WILD-TYPE" "OR5K3 WILD-TYPE" 
     TCGA-44-2656      TCGA-44-2657      TCGA-44-2659      TCGA-44-2661 
  "OR5K3 MUTATED" "OR5K3 WILD-TYPE" "OR5K3 WILD-TYPE" "OR5K3 WILD-TYPE" 
     TCGA-44-2662      TCGA-44-2665      TCGA-44-2666      TCGA-44-2668 
"OR5K3 WILD-TYPE" "OR5K3 WILD-TYPE" "OR5K3 WILD-TYPE" "OR5K3 WILD-TYPE" 
     TCGA-44-3396      TCGA-44-3398      TCGA-44-3918      TCGA-44-3919 
"OR5K3 WILD-TYPE" "OR5K3 WILD-TYPE"   "OR5K3 MUTATED" "OR5K3 WILD-TYPE" 
     TCGA-44-4112      TCGA-44-5643      TCGA-44-5645      TCGA-44-6144 
"OR5K3 WILD-TYPE" "OR5K3 WILD-TYPE" "OR5K3 WILD-TYPE" "OR5K3 WILD-TYPE" 
     TCGA-44-6145      TCGA-44-6146      TCGA-44-6147      TCGA-44-6148 
  "OR5K3 MUTATED" "OR5K3 WILD-TYPE" "OR5K3 WILD-TYPE" "OR5K3 WILD-TYPE" 
     TCGA-44-6774      TCGA-44-6775      TCGA-44-6776      TCGA-44-6777 
"OR5K3 WILD-TYPE" "OR5K3 WILD-TYPE" "OR5K3 WILD-TYPE" "OR5K3 WILD-TYPE" 
     TCGA-44-6778      TCGA-44-6779      TCGA-49-4486      TCGA-49-4487 
"OR5K3 WILD-TYPE" "OR5K3 WILD-TYPE" "OR5K3 WILD-TYPE" "OR5K3 WILD-TYPE" 
     TCGA-49-4488      TCGA-49-4490      TCGA-49-4494      TCGA-49-4501 
"OR5K3 WILD-TYPE" "OR5K3 WILD-TYPE" "OR5K3 WILD-TYPE" "OR5K3 WILD-TYPE" 
     TCGA-49-4505      TCGA-49-4506      TCGA-49-4507      TCGA-49-4510 
"OR5K3 WILD-TYPE" "OR5K3 WILD-TYPE" "OR5K3 WILD-TYPE" "OR5K3 WILD-TYPE" 
     TCGA-49-4512      TCGA-49-4514      TCGA-49-6742      TCGA-49-6743 
"OR5K3 WILD-TYPE"   "OR5K3 MUTATED" "OR5K3 WILD-TYPE" "OR5K3 WILD-TYPE" 
     TCGA-49-6744      TCGA-49-6745      TCGA-50-5044      TCGA-50-5045 
"OR5K3 WILD-TYPE" "OR5K3 WILD-TYPE" "OR5K3 WILD-TYPE" "OR5K3 WILD-TYPE" 
     TCGA-50-5049      TCGA-50-5051      TCGA-50-5055      TCGA-50-5066 
  "OR5K3 MUTATED" "OR5K3 WILD-TYPE" "OR5K3 WILD-TYPE" "OR5K3 WILD-TYPE" 
     TCGA-50-5068      TCGA-50-5072      TCGA-50-5930      TCGA-50-5931 
"OR5K3 WILD-TYPE" "OR5K3 WILD-TYPE" "OR5K3 WILD-TYPE" "OR5K3 WILD-TYPE" 
     TCGA-50-5932      TCGA-50-5933      TCGA-50-5935      TCGA-50-5936 
"OR5K3 WILD-TYPE" "OR5K3 WILD-TYPE" "OR5K3 WILD-TYPE" "OR5K3 WILD-TYPE" 
     TCGA-50-5939      TCGA-50-5941      TCGA-50-5942      TCGA-50-5944 
"OR5K3 WILD-TYPE" "OR5K3 WILD-TYPE" "OR5K3 WILD-TYPE" "OR5K3 WILD-TYPE" 
     TCGA-50-5946      TCGA-50-6590      TCGA-50-6591      TCGA-50-6592 
"OR5K3 WILD-TYPE" "OR5K3 WILD-TYPE" "OR5K3 WILD-TYPE" "OR5K3 WILD-TYPE" 
     TCGA-50-6593      TCGA-50-6594      TCGA-50-6595      TCGA-50-6597 
"OR5K3 WILD-TYPE" "OR5K3 WILD-TYPE" "OR5K3 WILD-TYPE" "OR5K3 WILD-TYPE" 
     TCGA-55-1592      TCGA-55-1594      TCGA-55-1595      TCGA-55-1596 
"OR5K3 WILD-TYPE" "OR5K3 WILD-TYPE" "OR5K3 WILD-TYPE" "OR5K3 WILD-TYPE" 
     TCGA-55-5899      TCGA-55-6543      TCGA-55-6642      TCGA-55-6712 
"OR5K3 WILD-TYPE" "OR5K3 WILD-TYPE" "OR5K3 WILD-TYPE" "OR5K3 WILD-TYPE" 
     TCGA-64-1676      TCGA-64-1677      TCGA-64-1678      TCGA-64-1680 
"OR5K3 WILD-TYPE" "OR5K3 WILD-TYPE" "OR5K3 WILD-TYPE" "OR5K3 WILD-TYPE" 
     TCGA-64-5774      TCGA-64-5775      TCGA-64-5778      TCGA-64-5779 
"OR5K3 WILD-TYPE" "OR5K3 WILD-TYPE" "OR5K3 WILD-TYPE" "OR5K3 WILD-TYPE" 
     TCGA-64-5781      TCGA-64-5815      TCGA-67-3770      TCGA-67-3771 
"OR5K3 WILD-TYPE" "OR5K3 WILD-TYPE" "OR5K3 WILD-TYPE" "OR5K3 WILD-TYPE" 
     TCGA-67-3772      TCGA-67-3773      TCGA-67-3774      TCGA-67-6215 
"OR5K3 WILD-TYPE" "OR5K3 WILD-TYPE" "OR5K3 WILD-TYPE" "OR5K3 WILD-TYPE" 
     TCGA-67-6216      TCGA-67-6217      TCGA-71-6725      TCGA-73-4658 
"OR5K3 WILD-TYPE" "OR5K3 WILD-TYPE" "OR5K3 WILD-TYPE" "OR5K3 WILD-TYPE" 
     TCGA-73-4659      TCGA-73-4662      TCGA-73-4666      TCGA-73-4668 
"OR5K3 WILD-TYPE" "OR5K3 WILD-TYPE" "OR5K3 WILD-TYPE" "OR5K3 WILD-TYPE" 
     TCGA-73-4670      TCGA-73-4675      TCGA-73-4676      TCGA-73-4677 
"OR5K3 WILD-TYPE" "OR5K3 WILD-TYPE" "OR5K3 WILD-TYPE" "OR5K3 WILD-TYPE" 
     TCGA-91-6828      TCGA-91-6829      TCGA-91-6831      TCGA-91-6835 
  "OR5K3 MUTATED" "OR5K3 WILD-TYPE" "OR5K3 WILD-TYPE" "OR5K3 WILD-TYPE" 
     TCGA-91-6836 
"OR5K3 WILD-TYPE" 
[1] "hr=" "2.5"
D265V2, continuous
D265V3, binary
[1] "tbl2"
                 cls
clus              [,1] [,2]
  OR5K3 MUTATED      3    4
  OR5K3 WILD-TYPE   90   75
        clus
vv       OR5K3 MUTATED OR5K3 WILD-TYPE
  FEMALE             3              90
  MALE               4              75
D265V4, continuous
D265V5, multiclass
D265V6, multiclass
    clus
vv   OR5K3 MUTATED OR5K3 WILD-TYPE
  T1             4              37
  T2             3             105
  T3             0              14
  T4             0               8
D265V7, multiclass
       clus
vv      OR5K3 MUTATED OR5K3 WILD-TYPE
  N0                6              89
  N1                1              36
  N2+N3             0              35
D265V8, multiclass
    clus
vv   OR5K3 MUTATED OR5K3 WILD-TYPE
  M0             6             131
  M1             0               9
  MX             1              21
D265V9, multiclass
     clus
vv    OR5K3 MUTATED OR5K3 WILD-TYPE
  I               6              82
  II              1              32
  III             0              39
  IV              0               9
D265V10, binary
[1] "tbl2"
                 cls
clus              [,1] [,2]
  OR5K3 MUTATED      1    6
  OR5K3 WILD-TYPE   15  150
     clus
vv    OR5K3 MUTATED OR5K3 WILD-TYPE
  NO              1              15
  YES             6             150
D265V11, continuous
D265V12, continuous
D265V13, multiclass
                                             clus
vv                                            OR5K3 MUTATED OR5K3 WILD-TYPE
  CURRENT REFORMED SMOKER FOR < OR = 15 YEARS             2              60
  CURRENT REFORMED SMOKER FOR > 15 YEARS                  3              43
  CURRENT SMOKER                                          1              27
  LIFELONG NON-SMOKER                                     0              24
D265V14, continuous

Clustering(266) Variable = ZNF713 MUTATION ANALYSIS
D266V1, survival
                  sevent
clus2               0  1
  ZNF713 MUTATED    5  2
  ZNF713 WILD-TYPE 94 48
  ZNF713 MUTATED ZNF713 WILD-TYPE 
               7              142 
  ZNF713 MUTATED ZNF713 WILD-TYPE 
               2               48 
$`ZNF713 MUTATED`
TCGA-05-4396 TCGA-44-2656 TCGA-49-6744 TCGA-50-5072 TCGA-50-6592 TCGA-67-3771 
        9.96        19.10        12.99         8.05        25.51         1.97 
TCGA-91-6836 
        0.36 

$`ZNF713 WILD-TYPE`
TCGA-05-4249 TCGA-05-4250 TCGA-05-4382 TCGA-05-4384 TCGA-05-4390 TCGA-05-4397 
       38.07         3.98        19.92        14.01        37.02        24.03 
TCGA-05-4398 TCGA-05-4402 TCGA-05-4405 TCGA-05-4415 TCGA-05-4417 TCGA-05-4418 
       47.05         8.02        20.05         2.96        14.93         8.98 
TCGA-05-4420 TCGA-05-4424 TCGA-05-4426 TCGA-05-4427 TCGA-05-4430 TCGA-05-4432 
       29.95        30.02        26.01        26.01        25.02        25.02 
TCGA-05-4433 TCGA-05-4434 TCGA-05-5420 TCGA-05-5423 TCGA-05-5425 TCGA-05-5429 
       24.00        15.02         1.02         4.96         2.96         0.99 
TCGA-05-5715 TCGA-35-3615 TCGA-35-4122 TCGA-35-4123 TCGA-35-5375 TCGA-38-4625 
        2.04         0.46         7.36         5.95         8.68        47.61 
TCGA-38-4626 TCGA-38-4627 TCGA-38-4628 TCGA-38-4629 TCGA-38-4630 TCGA-38-4631 
       85.32        37.71        49.02        28.37        35.28        11.64 
TCGA-38-4632 TCGA-38-6178 TCGA-44-2655 TCGA-44-2657 TCGA-44-2659 TCGA-44-2661 
       44.61         5.19        18.87        13.15        17.39         3.39 
TCGA-44-2662 TCGA-44-2665 TCGA-44-2666 TCGA-44-2668 TCGA-44-3396 TCGA-44-3398 
       15.78        13.15         3.19         8.09        10.22         8.32 
TCGA-44-3918 TCGA-44-3919 TCGA-44-4112 TCGA-44-5643 TCGA-44-5645 TCGA-44-6144 
        6.44         6.21         4.60         3.48         6.84         0.30 
TCGA-44-6145 TCGA-44-6146 TCGA-44-6147 TCGA-44-6148 TCGA-44-6774 TCGA-44-6775 
        3.35         9.93         7.76         3.12         5.42         2.70 
TCGA-44-6776 TCGA-44-6777 TCGA-44-6778 TCGA-44-6779 TCGA-49-4486 TCGA-49-4487 
       63.72        32.45        36.49        16.41        76.21        28.11 
TCGA-49-4488 TCGA-49-4490 TCGA-49-4494 TCGA-49-4501 TCGA-49-4505 TCGA-49-4506 
       28.57        12.66        35.54        46.72        14.07        32.84 
TCGA-49-4507 TCGA-49-4510 TCGA-49-4512 TCGA-49-4514 TCGA-49-6742 TCGA-49-6743 
        8.81        29.46        29.75        43.20        15.02        12.13 
TCGA-49-6745 TCGA-50-5044 TCGA-50-5045 TCGA-50-5049 TCGA-50-5051 TCGA-50-5055 
        4.93        20.48        71.47        48.82        14.96        25.81 
TCGA-50-5066 TCGA-50-5068 TCGA-50-5930 TCGA-50-5931 TCGA-50-5932 TCGA-50-5933 
        9.76        49.28         9.27         8.78        35.87        77.88 
TCGA-50-5935 TCGA-50-5936 TCGA-50-5939 TCGA-50-5941 TCGA-50-5942 TCGA-50-5944 
       21.47         8.45        15.12         9.37         4.44        12.26 
TCGA-50-5946 TCGA-50-6590 TCGA-50-6591 TCGA-50-6593 TCGA-50-6594 TCGA-50-6595 
       11.47        42.31         3.88        11.05        12.16         6.21 
TCGA-50-6597 TCGA-55-1592 TCGA-55-1594 TCGA-55-1595 TCGA-55-1596 TCGA-55-5899 
       33.37        23.05        38.73        48.62        45.17         2.86 
TCGA-55-6543 TCGA-55-6642 TCGA-55-6712 TCGA-64-1676 TCGA-64-1677 TCGA-64-1678 
        0.07        32.61         0.79        56.81        20.65        39.09 
TCGA-64-1680 TCGA-64-5774 TCGA-64-5775 TCGA-64-5778 TCGA-64-5779 TCGA-64-5781 
       37.02        83.84         0.10        30.44        16.67        39.52 
TCGA-64-5815 TCGA-67-3770 TCGA-67-3772 TCGA-67-3773 TCGA-67-3774 TCGA-67-6215 
        7.33         0.99         0.59         2.04         0.59         0.89 
TCGA-67-6216 TCGA-67-6217 TCGA-71-6725 TCGA-73-4658 TCGA-73-4659 TCGA-73-4662 
        0.69        13.87         2.01        52.57        23.38        29.95 
TCGA-73-4666 TCGA-73-4668 TCGA-73-4670 TCGA-73-4675 TCGA-73-4676 TCGA-73-4677 
       20.28        15.35         0.46         1.32         4.01         1.25 
TCGA-91-6828 TCGA-91-6829 TCGA-91-6831 TCGA-91-6835 
        1.22        41.33         1.28         1.15 

  ZNF713 MUTATED ZNF713 WILD-TYPE 
            0.36             0.07 
  ZNF713 MUTATED ZNF713 WILD-TYPE 
           25.51            85.32 
  ZNF713 MUTATED ZNF713 WILD-TYPE 
            9.96            14.04 
[1] "0.4 - 25.5 (10.0)" "0.1 - 85.3 (14.0)"
      TCGA-05-4249       TCGA-05-4250       TCGA-05-4382       TCGA-05-4384 
"ZNF713 WILD-TYPE" "ZNF713 WILD-TYPE" "ZNF713 WILD-TYPE" "ZNF713 WILD-TYPE" 
      TCGA-05-4390       TCGA-05-4396       TCGA-05-4397       TCGA-05-4398 
"ZNF713 WILD-TYPE"   "ZNF713 MUTATED" "ZNF713 WILD-TYPE" "ZNF713 WILD-TYPE" 
      TCGA-05-4402       TCGA-05-4405       TCGA-05-4415       TCGA-05-4417 
"ZNF713 WILD-TYPE" "ZNF713 WILD-TYPE" "ZNF713 WILD-TYPE" "ZNF713 WILD-TYPE" 
      TCGA-05-4418       TCGA-05-4420       TCGA-05-4424       TCGA-05-4426 
"ZNF713 WILD-TYPE" "ZNF713 WILD-TYPE" "ZNF713 WILD-TYPE" "ZNF713 WILD-TYPE" 
      TCGA-05-4427       TCGA-05-4430       TCGA-05-4432       TCGA-05-4433 
"ZNF713 WILD-TYPE" "ZNF713 WILD-TYPE" "ZNF713 WILD-TYPE" "ZNF713 WILD-TYPE" 
      TCGA-05-4434       TCGA-05-5420       TCGA-05-5423       TCGA-05-5425 
"ZNF713 WILD-TYPE" "ZNF713 WILD-TYPE" "ZNF713 WILD-TYPE" "ZNF713 WILD-TYPE" 
      TCGA-05-5429       TCGA-05-5715       TCGA-35-3615       TCGA-35-4122 
"ZNF713 WILD-TYPE" "ZNF713 WILD-TYPE" "ZNF713 WILD-TYPE" "ZNF713 WILD-TYPE" 
      TCGA-35-4123       TCGA-35-5375       TCGA-38-4625       TCGA-38-4626 
"ZNF713 WILD-TYPE" "ZNF713 WILD-TYPE" "ZNF713 WILD-TYPE" "ZNF713 WILD-TYPE" 
      TCGA-38-4627       TCGA-38-4628       TCGA-38-4629       TCGA-38-4630 
"ZNF713 WILD-TYPE" "ZNF713 WILD-TYPE" "ZNF713 WILD-TYPE" "ZNF713 WILD-TYPE" 
      TCGA-38-4631       TCGA-38-4632       TCGA-38-6178       TCGA-44-2655 
"ZNF713 WILD-TYPE" "ZNF713 WILD-TYPE" "ZNF713 WILD-TYPE" "ZNF713 WILD-TYPE" 
      TCGA-44-2656       TCGA-44-2657       TCGA-44-2659       TCGA-44-2661 
  "ZNF713 MUTATED" "ZNF713 WILD-TYPE" "ZNF713 WILD-TYPE" "ZNF713 WILD-TYPE" 
      TCGA-44-2662       TCGA-44-2665       TCGA-44-2666       TCGA-44-2668 
"ZNF713 WILD-TYPE" "ZNF713 WILD-TYPE" "ZNF713 WILD-TYPE" "ZNF713 WILD-TYPE" 
      TCGA-44-3396       TCGA-44-3398       TCGA-44-3918       TCGA-44-3919 
"ZNF713 WILD-TYPE" "ZNF713 WILD-TYPE" "ZNF713 WILD-TYPE" "ZNF713 WILD-TYPE" 
      TCGA-44-4112       TCGA-44-5643       TCGA-44-5645       TCGA-44-6144 
"ZNF713 WILD-TYPE" "ZNF713 WILD-TYPE" "ZNF713 WILD-TYPE" "ZNF713 WILD-TYPE" 
      TCGA-44-6145       TCGA-44-6146       TCGA-44-6147       TCGA-44-6148 
"ZNF713 WILD-TYPE" "ZNF713 WILD-TYPE" "ZNF713 WILD-TYPE" "ZNF713 WILD-TYPE" 
      TCGA-44-6774       TCGA-44-6775       TCGA-44-6776       TCGA-44-6777 
"ZNF713 WILD-TYPE" "ZNF713 WILD-TYPE" "ZNF713 WILD-TYPE" "ZNF713 WILD-TYPE" 
      TCGA-44-6778       TCGA-44-6779       TCGA-49-4486       TCGA-49-4487 
"ZNF713 WILD-TYPE" "ZNF713 WILD-TYPE" "ZNF713 WILD-TYPE" "ZNF713 WILD-TYPE" 
      TCGA-49-4488       TCGA-49-4490       TCGA-49-4494       TCGA-49-4501 
"ZNF713 WILD-TYPE" "ZNF713 WILD-TYPE" "ZNF713 WILD-TYPE" "ZNF713 WILD-TYPE" 
      TCGA-49-4505       TCGA-49-4506       TCGA-49-4507       TCGA-49-4510 
"ZNF713 WILD-TYPE" "ZNF713 WILD-TYPE" "ZNF713 WILD-TYPE" "ZNF713 WILD-TYPE" 
      TCGA-49-4512       TCGA-49-4514       TCGA-49-6742       TCGA-49-6743 
"ZNF713 WILD-TYPE" "ZNF713 WILD-TYPE" "ZNF713 WILD-TYPE" "ZNF713 WILD-TYPE" 
      TCGA-49-6744       TCGA-49-6745       TCGA-50-5044       TCGA-50-5045 
  "ZNF713 MUTATED" "ZNF713 WILD-TYPE" "ZNF713 WILD-TYPE" "ZNF713 WILD-TYPE" 
      TCGA-50-5049       TCGA-50-5051       TCGA-50-5055       TCGA-50-5066 
"ZNF713 WILD-TYPE" "ZNF713 WILD-TYPE" "ZNF713 WILD-TYPE" "ZNF713 WILD-TYPE" 
      TCGA-50-5068       TCGA-50-5072       TCGA-50-5930       TCGA-50-5931 
"ZNF713 WILD-TYPE"   "ZNF713 MUTATED" "ZNF713 WILD-TYPE" "ZNF713 WILD-TYPE" 
      TCGA-50-5932       TCGA-50-5933       TCGA-50-5935       TCGA-50-5936 
"ZNF713 WILD-TYPE" "ZNF713 WILD-TYPE" "ZNF713 WILD-TYPE" "ZNF713 WILD-TYPE" 
      TCGA-50-5939       TCGA-50-5941       TCGA-50-5942       TCGA-50-5944 
"ZNF713 WILD-TYPE" "ZNF713 WILD-TYPE" "ZNF713 WILD-TYPE" "ZNF713 WILD-TYPE" 
      TCGA-50-5946       TCGA-50-6590       TCGA-50-6591       TCGA-50-6592 
"ZNF713 WILD-TYPE" "ZNF713 WILD-TYPE" "ZNF713 WILD-TYPE"   "ZNF713 MUTATED" 
      TCGA-50-6593       TCGA-50-6594       TCGA-50-6595       TCGA-50-6597 
"ZNF713 WILD-TYPE" "ZNF713 WILD-TYPE" "ZNF713 WILD-TYPE" "ZNF713 WILD-TYPE" 
      TCGA-55-1592       TCGA-55-1594       TCGA-55-1595       TCGA-55-1596 
"ZNF713 WILD-TYPE" "ZNF713 WILD-TYPE" "ZNF713 WILD-TYPE" "ZNF713 WILD-TYPE" 
      TCGA-55-5899       TCGA-55-6543       TCGA-55-6642       TCGA-55-6712 
"ZNF713 WILD-TYPE" "ZNF713 WILD-TYPE" "ZNF713 WILD-TYPE" "ZNF713 WILD-TYPE" 
      TCGA-64-1676       TCGA-64-1677       TCGA-64-1678       TCGA-64-1680 
"ZNF713 WILD-TYPE" "ZNF713 WILD-TYPE" "ZNF713 WILD-TYPE" "ZNF713 WILD-TYPE" 
      TCGA-64-5774       TCGA-64-5775       TCGA-64-5778       TCGA-64-5779 
"ZNF713 WILD-TYPE" "ZNF713 WILD-TYPE" "ZNF713 WILD-TYPE" "ZNF713 WILD-TYPE" 
      TCGA-64-5781       TCGA-64-5815       TCGA-67-3770       TCGA-67-3771 
"ZNF713 WILD-TYPE" "ZNF713 WILD-TYPE" "ZNF713 WILD-TYPE"   "ZNF713 MUTATED" 
      TCGA-67-3772       TCGA-67-3773       TCGA-67-3774       TCGA-67-6215 
"ZNF713 WILD-TYPE" "ZNF713 WILD-TYPE" "ZNF713 WILD-TYPE" "ZNF713 WILD-TYPE" 
      TCGA-67-6216       TCGA-67-6217       TCGA-71-6725       TCGA-73-4658 
"ZNF713 WILD-TYPE" "ZNF713 WILD-TYPE" "ZNF713 WILD-TYPE" "ZNF713 WILD-TYPE" 
      TCGA-73-4659       TCGA-73-4662       TCGA-73-4666       TCGA-73-4668 
"ZNF713 WILD-TYPE" "ZNF713 WILD-TYPE" "ZNF713 WILD-TYPE" "ZNF713 WILD-TYPE" 
      TCGA-73-4670       TCGA-73-4675       TCGA-73-4676       TCGA-73-4677 
"ZNF713 WILD-TYPE" "ZNF713 WILD-TYPE" "ZNF713 WILD-TYPE" "ZNF713 WILD-TYPE" 
      TCGA-91-6828       TCGA-91-6829       TCGA-91-6831       TCGA-91-6835 
"ZNF713 WILD-TYPE" "ZNF713 WILD-TYPE" "ZNF713 WILD-TYPE" "ZNF713 WILD-TYPE" 
      TCGA-91-6836 
  "ZNF713 MUTATED" 
      TCGA-05-4249       TCGA-05-4250       TCGA-05-4382       TCGA-05-4384 
"ZNF713 WILD-TYPE" "ZNF713 WILD-TYPE" "ZNF713 WILD-TYPE" "ZNF713 WILD-TYPE" 
      TCGA-05-4390       TCGA-05-4396       TCGA-05-4397       TCGA-05-4398 
"ZNF713 WILD-TYPE"   "ZNF713 MUTATED" "ZNF713 WILD-TYPE" "ZNF713 WILD-TYPE" 
      TCGA-05-4402       TCGA-05-4405       TCGA-05-4415       TCGA-05-4417 
"ZNF713 WILD-TYPE" "ZNF713 WILD-TYPE" "ZNF713 WILD-TYPE" "ZNF713 WILD-TYPE" 
      TCGA-05-4418       TCGA-05-4420       TCGA-05-4424       TCGA-05-4426 
"ZNF713 WILD-TYPE" "ZNF713 WILD-TYPE" "ZNF713 WILD-TYPE" "ZNF713 WILD-TYPE" 
      TCGA-05-4427       TCGA-05-4430       TCGA-05-4432       TCGA-05-4433 
"ZNF713 WILD-TYPE" "ZNF713 WILD-TYPE" "ZNF713 WILD-TYPE" "ZNF713 WILD-TYPE" 
      TCGA-05-4434       TCGA-05-5420       TCGA-05-5423       TCGA-05-5425 
"ZNF713 WILD-TYPE" "ZNF713 WILD-TYPE" "ZNF713 WILD-TYPE" "ZNF713 WILD-TYPE" 
      TCGA-05-5429       TCGA-05-5715       TCGA-35-3615       TCGA-35-4122 
"ZNF713 WILD-TYPE" "ZNF713 WILD-TYPE" "ZNF713 WILD-TYPE" "ZNF713 WILD-TYPE" 
      TCGA-35-4123       TCGA-35-5375       TCGA-38-4625       TCGA-38-4626 
"ZNF713 WILD-TYPE" "ZNF713 WILD-TYPE" "ZNF713 WILD-TYPE" "ZNF713 WILD-TYPE" 
      TCGA-38-4627       TCGA-38-4628       TCGA-38-4629       TCGA-38-4630 
"ZNF713 WILD-TYPE" "ZNF713 WILD-TYPE" "ZNF713 WILD-TYPE" "ZNF713 WILD-TYPE" 
      TCGA-38-4631       TCGA-38-4632       TCGA-38-6178       TCGA-44-2655 
"ZNF713 WILD-TYPE" "ZNF713 WILD-TYPE" "ZNF713 WILD-TYPE" "ZNF713 WILD-TYPE" 
      TCGA-44-2656       TCGA-44-2657       TCGA-44-2659       TCGA-44-2661 
  "ZNF713 MUTATED" "ZNF713 WILD-TYPE" "ZNF713 WILD-TYPE" "ZNF713 WILD-TYPE" 
      TCGA-44-2662       TCGA-44-2665       TCGA-44-2666       TCGA-44-2668 
"ZNF713 WILD-TYPE" "ZNF713 WILD-TYPE" "ZNF713 WILD-TYPE" "ZNF713 WILD-TYPE" 
      TCGA-44-3396       TCGA-44-3398       TCGA-44-3918       TCGA-44-3919 
"ZNF713 WILD-TYPE" "ZNF713 WILD-TYPE" "ZNF713 WILD-TYPE" "ZNF713 WILD-TYPE" 
      TCGA-44-4112       TCGA-44-5643       TCGA-44-5645       TCGA-44-6144 
"ZNF713 WILD-TYPE" "ZNF713 WILD-TYPE" "ZNF713 WILD-TYPE" "ZNF713 WILD-TYPE" 
      TCGA-44-6145       TCGA-44-6146       TCGA-44-6147       TCGA-44-6148 
"ZNF713 WILD-TYPE" "ZNF713 WILD-TYPE" "ZNF713 WILD-TYPE" "ZNF713 WILD-TYPE" 
      TCGA-44-6774       TCGA-44-6775       TCGA-44-6776       TCGA-44-6777 
"ZNF713 WILD-TYPE" "ZNF713 WILD-TYPE" "ZNF713 WILD-TYPE" "ZNF713 WILD-TYPE" 
      TCGA-44-6778       TCGA-44-6779       TCGA-49-4486       TCGA-49-4487 
"ZNF713 WILD-TYPE" "ZNF713 WILD-TYPE" "ZNF713 WILD-TYPE" "ZNF713 WILD-TYPE" 
      TCGA-49-4488       TCGA-49-4490       TCGA-49-4494       TCGA-49-4501 
"ZNF713 WILD-TYPE" "ZNF713 WILD-TYPE" "ZNF713 WILD-TYPE" "ZNF713 WILD-TYPE" 
      TCGA-49-4505       TCGA-49-4506       TCGA-49-4507       TCGA-49-4510 
"ZNF713 WILD-TYPE" "ZNF713 WILD-TYPE" "ZNF713 WILD-TYPE" "ZNF713 WILD-TYPE" 
      TCGA-49-4512       TCGA-49-4514       TCGA-49-6742       TCGA-49-6743 
"ZNF713 WILD-TYPE" "ZNF713 WILD-TYPE" "ZNF713 WILD-TYPE" "ZNF713 WILD-TYPE" 
      TCGA-49-6744       TCGA-49-6745       TCGA-50-5044       TCGA-50-5045 
  "ZNF713 MUTATED" "ZNF713 WILD-TYPE" "ZNF713 WILD-TYPE" "ZNF713 WILD-TYPE" 
      TCGA-50-5049       TCGA-50-5051       TCGA-50-5055       TCGA-50-5066 
"ZNF713 WILD-TYPE" "ZNF713 WILD-TYPE" "ZNF713 WILD-TYPE" "ZNF713 WILD-TYPE" 
      TCGA-50-5068       TCGA-50-5072       TCGA-50-5930       TCGA-50-5931 
"ZNF713 WILD-TYPE"   "ZNF713 MUTATED" "ZNF713 WILD-TYPE" "ZNF713 WILD-TYPE" 
      TCGA-50-5932       TCGA-50-5933       TCGA-50-5935       TCGA-50-5936 
"ZNF713 WILD-TYPE" "ZNF713 WILD-TYPE" "ZNF713 WILD-TYPE" "ZNF713 WILD-TYPE" 
      TCGA-50-5939       TCGA-50-5941       TCGA-50-5942       TCGA-50-5944 
"ZNF713 WILD-TYPE" "ZNF713 WILD-TYPE" "ZNF713 WILD-TYPE" "ZNF713 WILD-TYPE" 
      TCGA-50-5946       TCGA-50-6590       TCGA-50-6591       TCGA-50-6592 
"ZNF713 WILD-TYPE" "ZNF713 WILD-TYPE" "ZNF713 WILD-TYPE"   "ZNF713 MUTATED" 
      TCGA-50-6593       TCGA-50-6594       TCGA-50-6595       TCGA-50-6597 
"ZNF713 WILD-TYPE" "ZNF713 WILD-TYPE" "ZNF713 WILD-TYPE" "ZNF713 WILD-TYPE" 
      TCGA-55-1592       TCGA-55-1594       TCGA-55-1595       TCGA-55-1596 
"ZNF713 WILD-TYPE" "ZNF713 WILD-TYPE" "ZNF713 WILD-TYPE" "ZNF713 WILD-TYPE" 
      TCGA-55-5899       TCGA-55-6543       TCGA-55-6642       TCGA-55-6712 
"ZNF713 WILD-TYPE" "ZNF713 WILD-TYPE" "ZNF713 WILD-TYPE" "ZNF713 WILD-TYPE" 
      TCGA-64-1676       TCGA-64-1677       TCGA-64-1678       TCGA-64-1680 
"ZNF713 WILD-TYPE" "ZNF713 WILD-TYPE" "ZNF713 WILD-TYPE" "ZNF713 WILD-TYPE" 
      TCGA-64-5774       TCGA-64-5775       TCGA-64-5778       TCGA-64-5779 
"ZNF713 WILD-TYPE" "ZNF713 WILD-TYPE" "ZNF713 WILD-TYPE" "ZNF713 WILD-TYPE" 
      TCGA-64-5781       TCGA-64-5815       TCGA-67-3770       TCGA-67-3771 
"ZNF713 WILD-TYPE" "ZNF713 WILD-TYPE" "ZNF713 WILD-TYPE"   "ZNF713 MUTATED" 
      TCGA-67-3772       TCGA-67-3773       TCGA-67-3774       TCGA-67-6215 
"ZNF713 WILD-TYPE" "ZNF713 WILD-TYPE" "ZNF713 WILD-TYPE" "ZNF713 WILD-TYPE" 
      TCGA-67-6216       TCGA-67-6217       TCGA-71-6725       TCGA-73-4658 
"ZNF713 WILD-TYPE" "ZNF713 WILD-TYPE" "ZNF713 WILD-TYPE" "ZNF713 WILD-TYPE" 
      TCGA-73-4659       TCGA-73-4662       TCGA-73-4666       TCGA-73-4668 
"ZNF713 WILD-TYPE" "ZNF713 WILD-TYPE" "ZNF713 WILD-TYPE" "ZNF713 WILD-TYPE" 
      TCGA-73-4670       TCGA-73-4675       TCGA-73-4676       TCGA-73-4677 
"ZNF713 WILD-TYPE" "ZNF713 WILD-TYPE" "ZNF713 WILD-TYPE" "ZNF713 WILD-TYPE" 
      TCGA-91-6828       TCGA-91-6829       TCGA-91-6831       TCGA-91-6835 
"ZNF713 WILD-TYPE" "ZNF713 WILD-TYPE" "ZNF713 WILD-TYPE" "ZNF713 WILD-TYPE" 
      TCGA-91-6836 
  "ZNF713 MUTATED" 
      TCGA-05-4249       TCGA-05-4250       TCGA-05-4382       TCGA-05-4384 
"ZNF713 WILD-TYPE" "ZNF713 WILD-TYPE" "ZNF713 WILD-TYPE" "ZNF713 WILD-TYPE" 
      TCGA-05-4390       TCGA-05-4396       TCGA-05-4397       TCGA-05-4398 
"ZNF713 WILD-TYPE"   "ZNF713 MUTATED" "ZNF713 WILD-TYPE" "ZNF713 WILD-TYPE" 
      TCGA-05-4402       TCGA-05-4405       TCGA-05-4415       TCGA-05-4417 
"ZNF713 WILD-TYPE" "ZNF713 WILD-TYPE" "ZNF713 WILD-TYPE" "ZNF713 WILD-TYPE" 
      TCGA-05-4418       TCGA-05-4420       TCGA-05-4424       TCGA-05-4426 
"ZNF713 WILD-TYPE" "ZNF713 WILD-TYPE" "ZNF713 WILD-TYPE" "ZNF713 WILD-TYPE" 
      TCGA-05-4427       TCGA-05-4430       TCGA-05-4432       TCGA-05-4433 
"ZNF713 WILD-TYPE" "ZNF713 WILD-TYPE" "ZNF713 WILD-TYPE" "ZNF713 WILD-TYPE" 
      TCGA-05-4434       TCGA-05-5420       TCGA-05-5423       TCGA-05-5425 
"ZNF713 WILD-TYPE" "ZNF713 WILD-TYPE" "ZNF713 WILD-TYPE" "ZNF713 WILD-TYPE" 
      TCGA-05-5429       TCGA-05-5715       TCGA-35-3615       TCGA-35-4122 
"ZNF713 WILD-TYPE" "ZNF713 WILD-TYPE" "ZNF713 WILD-TYPE" "ZNF713 WILD-TYPE" 
      TCGA-35-4123       TCGA-35-5375       TCGA-38-4625       TCGA-38-4626 
"ZNF713 WILD-TYPE" "ZNF713 WILD-TYPE" "ZNF713 WILD-TYPE" "ZNF713 WILD-TYPE" 
      TCGA-38-4627       TCGA-38-4628       TCGA-38-4629       TCGA-38-4630 
"ZNF713 WILD-TYPE" "ZNF713 WILD-TYPE" "ZNF713 WILD-TYPE" "ZNF713 WILD-TYPE" 
      TCGA-38-4631       TCGA-38-4632       TCGA-38-6178       TCGA-44-2655 
"ZNF713 WILD-TYPE" "ZNF713 WILD-TYPE" "ZNF713 WILD-TYPE" "ZNF713 WILD-TYPE" 
      TCGA-44-2656       TCGA-44-2657       TCGA-44-2659       TCGA-44-2661 
  "ZNF713 MUTATED" "ZNF713 WILD-TYPE" "ZNF713 WILD-TYPE" "ZNF713 WILD-TYPE" 
      TCGA-44-2662       TCGA-44-2665       TCGA-44-2666       TCGA-44-2668 
"ZNF713 WILD-TYPE" "ZNF713 WILD-TYPE" "ZNF713 WILD-TYPE" "ZNF713 WILD-TYPE" 
      TCGA-44-3396       TCGA-44-3398       TCGA-44-3918       TCGA-44-3919 
"ZNF713 WILD-TYPE" "ZNF713 WILD-TYPE" "ZNF713 WILD-TYPE" "ZNF713 WILD-TYPE" 
      TCGA-44-4112       TCGA-44-5643       TCGA-44-5645       TCGA-44-6144 
"ZNF713 WILD-TYPE" "ZNF713 WILD-TYPE" "ZNF713 WILD-TYPE" "ZNF713 WILD-TYPE" 
      TCGA-44-6145       TCGA-44-6146       TCGA-44-6147       TCGA-44-6148 
"ZNF713 WILD-TYPE" "ZNF713 WILD-TYPE" "ZNF713 WILD-TYPE" "ZNF713 WILD-TYPE" 
      TCGA-44-6774       TCGA-44-6775       TCGA-44-6776       TCGA-44-6777 
"ZNF713 WILD-TYPE" "ZNF713 WILD-TYPE" "ZNF713 WILD-TYPE" "ZNF713 WILD-TYPE" 
      TCGA-44-6778       TCGA-44-6779       TCGA-49-4486       TCGA-49-4487 
"ZNF713 WILD-TYPE" "ZNF713 WILD-TYPE" "ZNF713 WILD-TYPE" "ZNF713 WILD-TYPE" 
      TCGA-49-4488       TCGA-49-4490       TCGA-49-4494       TCGA-49-4501 
"ZNF713 WILD-TYPE" "ZNF713 WILD-TYPE" "ZNF713 WILD-TYPE" "ZNF713 WILD-TYPE" 
      TCGA-49-4505       TCGA-49-4506       TCGA-49-4507       TCGA-49-4510 
"ZNF713 WILD-TYPE" "ZNF713 WILD-TYPE" "ZNF713 WILD-TYPE" "ZNF713 WILD-TYPE" 
      TCGA-49-4512       TCGA-49-4514       TCGA-49-6742       TCGA-49-6743 
"ZNF713 WILD-TYPE" "ZNF713 WILD-TYPE" "ZNF713 WILD-TYPE" "ZNF713 WILD-TYPE" 
      TCGA-49-6744       TCGA-49-6745       TCGA-50-5044       TCGA-50-5045 
  "ZNF713 MUTATED" "ZNF713 WILD-TYPE" "ZNF713 WILD-TYPE" "ZNF713 WILD-TYPE" 
      TCGA-50-5049       TCGA-50-5051       TCGA-50-5055       TCGA-50-5066 
"ZNF713 WILD-TYPE" "ZNF713 WILD-TYPE" "ZNF713 WILD-TYPE" "ZNF713 WILD-TYPE" 
      TCGA-50-5068       TCGA-50-5072       TCGA-50-5930       TCGA-50-5931 
"ZNF713 WILD-TYPE"   "ZNF713 MUTATED" "ZNF713 WILD-TYPE" "ZNF713 WILD-TYPE" 
      TCGA-50-5932       TCGA-50-5933       TCGA-50-5935       TCGA-50-5936 
"ZNF713 WILD-TYPE" "ZNF713 WILD-TYPE" "ZNF713 WILD-TYPE" "ZNF713 WILD-TYPE" 
      TCGA-50-5939       TCGA-50-5941       TCGA-50-5942       TCGA-50-5944 
"ZNF713 WILD-TYPE" "ZNF713 WILD-TYPE" "ZNF713 WILD-TYPE" "ZNF713 WILD-TYPE" 
      TCGA-50-5946       TCGA-50-6590       TCGA-50-6591       TCGA-50-6592 
"ZNF713 WILD-TYPE" "ZNF713 WILD-TYPE" "ZNF713 WILD-TYPE"   "ZNF713 MUTATED" 
      TCGA-50-6593       TCGA-50-6594       TCGA-50-6595       TCGA-50-6597 
"ZNF713 WILD-TYPE" "ZNF713 WILD-TYPE" "ZNF713 WILD-TYPE" "ZNF713 WILD-TYPE" 
      TCGA-55-1592       TCGA-55-1594       TCGA-55-1595       TCGA-55-1596 
"ZNF713 WILD-TYPE" "ZNF713 WILD-TYPE" "ZNF713 WILD-TYPE" "ZNF713 WILD-TYPE" 
      TCGA-55-5899       TCGA-55-6543       TCGA-55-6642       TCGA-55-6712 
"ZNF713 WILD-TYPE" "ZNF713 WILD-TYPE" "ZNF713 WILD-TYPE" "ZNF713 WILD-TYPE" 
      TCGA-64-1676       TCGA-64-1677       TCGA-64-1678       TCGA-64-1680 
"ZNF713 WILD-TYPE" "ZNF713 WILD-TYPE" "ZNF713 WILD-TYPE" "ZNF713 WILD-TYPE" 
      TCGA-64-5774       TCGA-64-5775       TCGA-64-5778       TCGA-64-5779 
"ZNF713 WILD-TYPE" "ZNF713 WILD-TYPE" "ZNF713 WILD-TYPE" "ZNF713 WILD-TYPE" 
      TCGA-64-5781       TCGA-64-5815       TCGA-67-3770       TCGA-67-3771 
"ZNF713 WILD-TYPE" "ZNF713 WILD-TYPE" "ZNF713 WILD-TYPE"   "ZNF713 MUTATED" 
      TCGA-67-3772       TCGA-67-3773       TCGA-67-3774       TCGA-67-6215 
"ZNF713 WILD-TYPE" "ZNF713 WILD-TYPE" "ZNF713 WILD-TYPE" "ZNF713 WILD-TYPE" 
      TCGA-67-6216       TCGA-67-6217       TCGA-71-6725       TCGA-73-4658 
"ZNF713 WILD-TYPE" "ZNF713 WILD-TYPE" "ZNF713 WILD-TYPE" "ZNF713 WILD-TYPE" 
      TCGA-73-4659       TCGA-73-4662       TCGA-73-4666       TCGA-73-4668 
"ZNF713 WILD-TYPE" "ZNF713 WILD-TYPE" "ZNF713 WILD-TYPE" "ZNF713 WILD-TYPE" 
      TCGA-73-4670       TCGA-73-4675       TCGA-73-4676       TCGA-73-4677 
"ZNF713 WILD-TYPE" "ZNF713 WILD-TYPE" "ZNF713 WILD-TYPE" "ZNF713 WILD-TYPE" 
      TCGA-91-6828       TCGA-91-6829       TCGA-91-6831       TCGA-91-6835 
"ZNF713 WILD-TYPE" "ZNF713 WILD-TYPE" "ZNF713 WILD-TYPE" "ZNF713 WILD-TYPE" 
      TCGA-91-6836 
  "ZNF713 MUTATED" 
[1] "hr=" "2.1"
D266V2, continuous
D266V3, binary
[1] "tbl2"
                  cls
clus               [,1] [,2]
  ZNF713 MUTATED      4    3
  ZNF713 WILD-TYPE   89   76
        clus
vv       ZNF713 MUTATED ZNF713 WILD-TYPE
  FEMALE              4               89
  MALE                3               76
D266V4, continuous
D266V5, multiclass
D266V6, multiclass
    clus
vv   ZNF713 MUTATED ZNF713 WILD-TYPE
  T1              1               40
  T2              5              103
  T3              0               14
  T4              1                7
D266V7, multiclass
       clus
vv      ZNF713 MUTATED ZNF713 WILD-TYPE
  N0                 4               91
  N1                 2               35
  N2+N3              1               34
D266V8, multiclass
    clus
vv   ZNF713 MUTATED ZNF713 WILD-TYPE
  M0              5              132
  M1              0                9
  MX              2               20
D266V9, multiclass
     clus
vv    ZNF713 MUTATED ZNF713 WILD-TYPE
  I                4               84
  II               1               32
  III              2               37
  IV               0                9
D266V10, binary
[1] "tbl2"
                  cls
clus               [,1] [,2]
  ZNF713 MUTATED      1    6
  ZNF713 WILD-TYPE   15  150
     clus
vv    ZNF713 MUTATED ZNF713 WILD-TYPE
  NO               1               15
  YES              6              150
D266V11, continuous
D266V12, continuous
D266V13, multiclass
                                             clus
vv                                            ZNF713 MUTATED ZNF713 WILD-TYPE
  CURRENT REFORMED SMOKER FOR < OR = 15 YEARS              4               58
  CURRENT REFORMED SMOKER FOR > 15 YEARS                   2               44
  CURRENT SMOKER                                           1               27
  LIFELONG NON-SMOKER                                      0               24
D266V14, continuous

Clustering(267) Variable = C1ORF49 MUTATION ANALYSIS
D267V1, survival
                   sevent
clus2                0  1
  C1ORF49 MUTATED    5  1
  C1ORF49 WILD-TYPE 94 49
  C1ORF49 MUTATED C1ORF49 WILD-TYPE 
                6               143 
  C1ORF49 MUTATED C1ORF49 WILD-TYPE 
                1                49 
$`C1ORF49 MUTATED`
TCGA-05-4424 TCGA-35-5375 TCGA-55-6712 TCGA-64-1677 TCGA-64-5778 TCGA-91-6836 
       30.02         8.68         0.79        20.65        30.44         0.36 

$`C1ORF49 WILD-TYPE`
TCGA-05-4249 TCGA-05-4250 TCGA-05-4382 TCGA-05-4384 TCGA-05-4390 TCGA-05-4396 
       38.07         3.98        19.92        14.01        37.02         9.96 
TCGA-05-4397 TCGA-05-4398 TCGA-05-4402 TCGA-05-4405 TCGA-05-4415 TCGA-05-4417 
       24.03        47.05         8.02        20.05         2.96        14.93 
TCGA-05-4418 TCGA-05-4420 TCGA-05-4426 TCGA-05-4427 TCGA-05-4430 TCGA-05-4432 
        8.98        29.95        26.01        26.01        25.02        25.02 
TCGA-05-4433 TCGA-05-4434 TCGA-05-5420 TCGA-05-5423 TCGA-05-5425 TCGA-05-5429 
       24.00        15.02         1.02         4.96         2.96         0.99 
TCGA-05-5715 TCGA-35-3615 TCGA-35-4122 TCGA-35-4123 TCGA-38-4625 TCGA-38-4626 
        2.04         0.46         7.36         5.95        47.61        85.32 
TCGA-38-4627 TCGA-38-4628 TCGA-38-4629 TCGA-38-4630 TCGA-38-4631 TCGA-38-4632 
       37.71        49.02        28.37        35.28        11.64        44.61 
TCGA-38-6178 TCGA-44-2655 TCGA-44-2656 TCGA-44-2657 TCGA-44-2659 TCGA-44-2661 
        5.19        18.87        19.10        13.15        17.39         3.39 
TCGA-44-2662 TCGA-44-2665 TCGA-44-2666 TCGA-44-2668 TCGA-44-3396 TCGA-44-3398 
       15.78        13.15         3.19         8.09        10.22         8.32 
TCGA-44-3918 TCGA-44-3919 TCGA-44-4112 TCGA-44-5643 TCGA-44-5645 TCGA-44-6144 
        6.44         6.21         4.60         3.48         6.84         0.30 
TCGA-44-6145 TCGA-44-6146 TCGA-44-6147 TCGA-44-6148 TCGA-44-6774 TCGA-44-6775 
        3.35         9.93         7.76         3.12         5.42         2.70 
TCGA-44-6776 TCGA-44-6777 TCGA-44-6778 TCGA-44-6779 TCGA-49-4486 TCGA-49-4487 
       63.72        32.45        36.49        16.41        76.21        28.11 
TCGA-49-4488 TCGA-49-4490 TCGA-49-4494 TCGA-49-4501 TCGA-49-4505 TCGA-49-4506 
       28.57        12.66        35.54        46.72        14.07        32.84 
TCGA-49-4507 TCGA-49-4510 TCGA-49-4512 TCGA-49-4514 TCGA-49-6742 TCGA-49-6743 
        8.81        29.46        29.75        43.20        15.02        12.13 
TCGA-49-6744 TCGA-49-6745 TCGA-50-5044 TCGA-50-5045 TCGA-50-5049 TCGA-50-5051 
       12.99         4.93        20.48        71.47        48.82        14.96 
TCGA-50-5055 TCGA-50-5066 TCGA-50-5068 TCGA-50-5072 TCGA-50-5930 TCGA-50-5931 
       25.81         9.76        49.28         8.05         9.27         8.78 
TCGA-50-5932 TCGA-50-5933 TCGA-50-5935 TCGA-50-5936 TCGA-50-5939 TCGA-50-5941 
       35.87        77.88        21.47         8.45        15.12         9.37 
TCGA-50-5942 TCGA-50-5944 TCGA-50-5946 TCGA-50-6590 TCGA-50-6591 TCGA-50-6592 
        4.44        12.26        11.47        42.31         3.88        25.51 
TCGA-50-6593 TCGA-50-6594 TCGA-50-6595 TCGA-50-6597 TCGA-55-1592 TCGA-55-1594 
       11.05        12.16         6.21        33.37        23.05        38.73 
TCGA-55-1595 TCGA-55-1596 TCGA-55-5899 TCGA-55-6543 TCGA-55-6642 TCGA-64-1676 
       48.62        45.17         2.86         0.07        32.61        56.81 
TCGA-64-1678 TCGA-64-1680 TCGA-64-5774 TCGA-64-5775 TCGA-64-5779 TCGA-64-5781 
       39.09        37.02        83.84         0.10        16.67        39.52 
TCGA-64-5815 TCGA-67-3770 TCGA-67-3771 TCGA-67-3772 TCGA-67-3773 TCGA-67-3774 
        7.33         0.99         1.97         0.59         2.04         0.59 
TCGA-67-6215 TCGA-67-6216 TCGA-67-6217 TCGA-71-6725 TCGA-73-4658 TCGA-73-4659 
        0.89         0.69        13.87         2.01        52.57        23.38 
TCGA-73-4662 TCGA-73-4666 TCGA-73-4668 TCGA-73-4670 TCGA-73-4675 TCGA-73-4676 
       29.95        20.28        15.35         0.46         1.32         4.01 
TCGA-73-4677 TCGA-91-6828 TCGA-91-6829 TCGA-91-6831 TCGA-91-6835 
        1.25         1.22        41.33         1.28         1.15 

  C1ORF49 MUTATED C1ORF49 WILD-TYPE 
             0.36              0.07 
  C1ORF49 MUTATED C1ORF49 WILD-TYPE 
            30.44             85.32 
  C1ORF49 MUTATED C1ORF49 WILD-TYPE 
           14.665            13.870 
[1] "0.4 - 30.4 (14.7)" "0.1 - 85.3 (13.9)"
       TCGA-05-4249        TCGA-05-4250        TCGA-05-4382        TCGA-05-4384 
"C1ORF49 WILD-TYPE" "C1ORF49 WILD-TYPE" "C1ORF49 WILD-TYPE" "C1ORF49 WILD-TYPE" 
       TCGA-05-4390        TCGA-05-4396        TCGA-05-4397        TCGA-05-4398 
"C1ORF49 WILD-TYPE" "C1ORF49 WILD-TYPE" "C1ORF49 WILD-TYPE" "C1ORF49 WILD-TYPE" 
       TCGA-05-4402        TCGA-05-4405        TCGA-05-4415        TCGA-05-4417 
"C1ORF49 WILD-TYPE" "C1ORF49 WILD-TYPE" "C1ORF49 WILD-TYPE" "C1ORF49 WILD-TYPE" 
       TCGA-05-4418        TCGA-05-4420        TCGA-05-4424        TCGA-05-4426 
"C1ORF49 WILD-TYPE" "C1ORF49 WILD-TYPE"   "C1ORF49 MUTATED" "C1ORF49 WILD-TYPE" 
       TCGA-05-4427        TCGA-05-4430        TCGA-05-4432        TCGA-05-4433 
"C1ORF49 WILD-TYPE" "C1ORF49 WILD-TYPE" "C1ORF49 WILD-TYPE" "C1ORF49 WILD-TYPE" 
       TCGA-05-4434        TCGA-05-5420        TCGA-05-5423        TCGA-05-5425 
"C1ORF49 WILD-TYPE" "C1ORF49 WILD-TYPE" "C1ORF49 WILD-TYPE" "C1ORF49 WILD-TYPE" 
       TCGA-05-5429        TCGA-05-5715        TCGA-35-3615        TCGA-35-4122 
"C1ORF49 WILD-TYPE" "C1ORF49 WILD-TYPE" "C1ORF49 WILD-TYPE" "C1ORF49 WILD-TYPE" 
       TCGA-35-4123        TCGA-35-5375        TCGA-38-4625        TCGA-38-4626 
"C1ORF49 WILD-TYPE"   "C1ORF49 MUTATED" "C1ORF49 WILD-TYPE" "C1ORF49 WILD-TYPE" 
       TCGA-38-4627        TCGA-38-4628        TCGA-38-4629        TCGA-38-4630 
"C1ORF49 WILD-TYPE" "C1ORF49 WILD-TYPE" "C1ORF49 WILD-TYPE" "C1ORF49 WILD-TYPE" 
       TCGA-38-4631        TCGA-38-4632        TCGA-38-6178        TCGA-44-2655 
"C1ORF49 WILD-TYPE" "C1ORF49 WILD-TYPE" "C1ORF49 WILD-TYPE" "C1ORF49 WILD-TYPE" 
       TCGA-44-2656        TCGA-44-2657        TCGA-44-2659        TCGA-44-2661 
"C1ORF49 WILD-TYPE" "C1ORF49 WILD-TYPE" "C1ORF49 WILD-TYPE" "C1ORF49 WILD-TYPE" 
       TCGA-44-2662        TCGA-44-2665        TCGA-44-2666        TCGA-44-2668 
"C1ORF49 WILD-TYPE" "C1ORF49 WILD-TYPE" "C1ORF49 WILD-TYPE" "C1ORF49 WILD-TYPE" 
       TCGA-44-3396        TCGA-44-3398        TCGA-44-3918        TCGA-44-3919 
"C1ORF49 WILD-TYPE" "C1ORF49 WILD-TYPE" "C1ORF49 WILD-TYPE" "C1ORF49 WILD-TYPE" 
       TCGA-44-4112        TCGA-44-5643        TCGA-44-5645        TCGA-44-6144 
"C1ORF49 WILD-TYPE" "C1ORF49 WILD-TYPE" "C1ORF49 WILD-TYPE" "C1ORF49 WILD-TYPE" 
       TCGA-44-6145        TCGA-44-6146        TCGA-44-6147        TCGA-44-6148 
"C1ORF49 WILD-TYPE" "C1ORF49 WILD-TYPE" "C1ORF49 WILD-TYPE" "C1ORF49 WILD-TYPE" 
       TCGA-44-6774        TCGA-44-6775        TCGA-44-6776        TCGA-44-6777 
"C1ORF49 WILD-TYPE" "C1ORF49 WILD-TYPE" "C1ORF49 WILD-TYPE" "C1ORF49 WILD-TYPE" 
       TCGA-44-6778        TCGA-44-6779        TCGA-49-4486        TCGA-49-4487 
"C1ORF49 WILD-TYPE" "C1ORF49 WILD-TYPE" "C1ORF49 WILD-TYPE" "C1ORF49 WILD-TYPE" 
       TCGA-49-4488        TCGA-49-4490        TCGA-49-4494        TCGA-49-4501 
"C1ORF49 WILD-TYPE" "C1ORF49 WILD-TYPE" "C1ORF49 WILD-TYPE" "C1ORF49 WILD-TYPE" 
       TCGA-49-4505        TCGA-49-4506        TCGA-49-4507        TCGA-49-4510 
"C1ORF49 WILD-TYPE" "C1ORF49 WILD-TYPE" "C1ORF49 WILD-TYPE" "C1ORF49 WILD-TYPE" 
       TCGA-49-4512        TCGA-49-4514        TCGA-49-6742        TCGA-49-6743 
"C1ORF49 WILD-TYPE" "C1ORF49 WILD-TYPE" "C1ORF49 WILD-TYPE" "C1ORF49 WILD-TYPE" 
       TCGA-49-6744        TCGA-49-6745        TCGA-50-5044        TCGA-50-5045 
"C1ORF49 WILD-TYPE" "C1ORF49 WILD-TYPE" "C1ORF49 WILD-TYPE" "C1ORF49 WILD-TYPE" 
       TCGA-50-5049        TCGA-50-5051        TCGA-50-5055        TCGA-50-5066 
"C1ORF49 WILD-TYPE" "C1ORF49 WILD-TYPE" "C1ORF49 WILD-TYPE" "C1ORF49 WILD-TYPE" 
       TCGA-50-5068        TCGA-50-5072        TCGA-50-5930        TCGA-50-5931 
"C1ORF49 WILD-TYPE" "C1ORF49 WILD-TYPE" "C1ORF49 WILD-TYPE" "C1ORF49 WILD-TYPE" 
       TCGA-50-5932        TCGA-50-5933        TCGA-50-5935        TCGA-50-5936 
"C1ORF49 WILD-TYPE" "C1ORF49 WILD-TYPE" "C1ORF49 WILD-TYPE" "C1ORF49 WILD-TYPE" 
       TCGA-50-5939        TCGA-50-5941        TCGA-50-5942        TCGA-50-5944 
"C1ORF49 WILD-TYPE" "C1ORF49 WILD-TYPE" "C1ORF49 WILD-TYPE" "C1ORF49 WILD-TYPE" 
       TCGA-50-5946        TCGA-50-6590        TCGA-50-6591        TCGA-50-6592 
"C1ORF49 WILD-TYPE" "C1ORF49 WILD-TYPE" "C1ORF49 WILD-TYPE" "C1ORF49 WILD-TYPE" 
       TCGA-50-6593        TCGA-50-6594        TCGA-50-6595        TCGA-50-6597 
"C1ORF49 WILD-TYPE" "C1ORF49 WILD-TYPE" "C1ORF49 WILD-TYPE" "C1ORF49 WILD-TYPE" 
       TCGA-55-1592        TCGA-55-1594        TCGA-55-1595        TCGA-55-1596 
"C1ORF49 WILD-TYPE" "C1ORF49 WILD-TYPE" "C1ORF49 WILD-TYPE" "C1ORF49 WILD-TYPE" 
       TCGA-55-5899        TCGA-55-6543        TCGA-55-6642        TCGA-55-6712 
"C1ORF49 WILD-TYPE" "C1ORF49 WILD-TYPE" "C1ORF49 WILD-TYPE"   "C1ORF49 MUTATED" 
       TCGA-64-1676        TCGA-64-1677        TCGA-64-1678        TCGA-64-1680 
"C1ORF49 WILD-TYPE"   "C1ORF49 MUTATED" "C1ORF49 WILD-TYPE" "C1ORF49 WILD-TYPE" 
       TCGA-64-5774        TCGA-64-5775        TCGA-64-5778        TCGA-64-5779 
"C1ORF49 WILD-TYPE" "C1ORF49 WILD-TYPE"   "C1ORF49 MUTATED" "C1ORF49 WILD-TYPE" 
       TCGA-64-5781        TCGA-64-5815        TCGA-67-3770        TCGA-67-3771 
"C1ORF49 WILD-TYPE" "C1ORF49 WILD-TYPE" "C1ORF49 WILD-TYPE" "C1ORF49 WILD-TYPE" 
       TCGA-67-3772        TCGA-67-3773        TCGA-67-3774        TCGA-67-6215 
"C1ORF49 WILD-TYPE" "C1ORF49 WILD-TYPE" "C1ORF49 WILD-TYPE" "C1ORF49 WILD-TYPE" 
       TCGA-67-6216        TCGA-67-6217        TCGA-71-6725        TCGA-73-4658 
"C1ORF49 WILD-TYPE" "C1ORF49 WILD-TYPE" "C1ORF49 WILD-TYPE" "C1ORF49 WILD-TYPE" 
       TCGA-73-4659        TCGA-73-4662        TCGA-73-4666        TCGA-73-4668 
"C1ORF49 WILD-TYPE" "C1ORF49 WILD-TYPE" "C1ORF49 WILD-TYPE" "C1ORF49 WILD-TYPE" 
       TCGA-73-4670        TCGA-73-4675        TCGA-73-4676        TCGA-73-4677 
"C1ORF49 WILD-TYPE" "C1ORF49 WILD-TYPE" "C1ORF49 WILD-TYPE" "C1ORF49 WILD-TYPE" 
       TCGA-91-6828        TCGA-91-6829        TCGA-91-6831        TCGA-91-6835 
"C1ORF49 WILD-TYPE" "C1ORF49 WILD-TYPE" "C1ORF49 WILD-TYPE" "C1ORF49 WILD-TYPE" 
       TCGA-91-6836 
  "C1ORF49 MUTATED" 
       TCGA-05-4249        TCGA-05-4250        TCGA-05-4382        TCGA-05-4384 
"C1ORF49 WILD-TYPE" "C1ORF49 WILD-TYPE" "C1ORF49 WILD-TYPE" "C1ORF49 WILD-TYPE" 
       TCGA-05-4390        TCGA-05-4396        TCGA-05-4397        TCGA-05-4398 
"C1ORF49 WILD-TYPE" "C1ORF49 WILD-TYPE" "C1ORF49 WILD-TYPE" "C1ORF49 WILD-TYPE" 
       TCGA-05-4402        TCGA-05-4405        TCGA-05-4415        TCGA-05-4417 
"C1ORF49 WILD-TYPE" "C1ORF49 WILD-TYPE" "C1ORF49 WILD-TYPE" "C1ORF49 WILD-TYPE" 
       TCGA-05-4418        TCGA-05-4420        TCGA-05-4424        TCGA-05-4426 
"C1ORF49 WILD-TYPE" "C1ORF49 WILD-TYPE"   "C1ORF49 MUTATED" "C1ORF49 WILD-TYPE" 
       TCGA-05-4427        TCGA-05-4430        TCGA-05-4432        TCGA-05-4433 
"C1ORF49 WILD-TYPE" "C1ORF49 WILD-TYPE" "C1ORF49 WILD-TYPE" "C1ORF49 WILD-TYPE" 
       TCGA-05-4434        TCGA-05-5420        TCGA-05-5423        TCGA-05-5425 
"C1ORF49 WILD-TYPE" "C1ORF49 WILD-TYPE" "C1ORF49 WILD-TYPE" "C1ORF49 WILD-TYPE" 
       TCGA-05-5429        TCGA-05-5715        TCGA-35-3615        TCGA-35-4122 
"C1ORF49 WILD-TYPE" "C1ORF49 WILD-TYPE" "C1ORF49 WILD-TYPE" "C1ORF49 WILD-TYPE" 
       TCGA-35-4123        TCGA-35-5375        TCGA-38-4625        TCGA-38-4626 
"C1ORF49 WILD-TYPE"   "C1ORF49 MUTATED" "C1ORF49 WILD-TYPE" "C1ORF49 WILD-TYPE" 
       TCGA-38-4627        TCGA-38-4628        TCGA-38-4629        TCGA-38-4630 
"C1ORF49 WILD-TYPE" "C1ORF49 WILD-TYPE" "C1ORF49 WILD-TYPE" "C1ORF49 WILD-TYPE" 
       TCGA-38-4631        TCGA-38-4632        TCGA-38-6178        TCGA-44-2655 
"C1ORF49 WILD-TYPE" "C1ORF49 WILD-TYPE" "C1ORF49 WILD-TYPE" "C1ORF49 WILD-TYPE" 
       TCGA-44-2656        TCGA-44-2657        TCGA-44-2659        TCGA-44-2661 
"C1ORF49 WILD-TYPE" "C1ORF49 WILD-TYPE" "C1ORF49 WILD-TYPE" "C1ORF49 WILD-TYPE" 
       TCGA-44-2662        TCGA-44-2665        TCGA-44-2666        TCGA-44-2668 
"C1ORF49 WILD-TYPE" "C1ORF49 WILD-TYPE" "C1ORF49 WILD-TYPE" "C1ORF49 WILD-TYPE" 
       TCGA-44-3396        TCGA-44-3398        TCGA-44-3918        TCGA-44-3919 
"C1ORF49 WILD-TYPE" "C1ORF49 WILD-TYPE" "C1ORF49 WILD-TYPE" "C1ORF49 WILD-TYPE" 
       TCGA-44-4112        TCGA-44-5643        TCGA-44-5645        TCGA-44-6144 
"C1ORF49 WILD-TYPE" "C1ORF49 WILD-TYPE" "C1ORF49 WILD-TYPE" "C1ORF49 WILD-TYPE" 
       TCGA-44-6145        TCGA-44-6146        TCGA-44-6147        TCGA-44-6148 
"C1ORF49 WILD-TYPE" "C1ORF49 WILD-TYPE" "C1ORF49 WILD-TYPE" "C1ORF49 WILD-TYPE" 
       TCGA-44-6774        TCGA-44-6775        TCGA-44-6776        TCGA-44-6777 
"C1ORF49 WILD-TYPE" "C1ORF49 WILD-TYPE" "C1ORF49 WILD-TYPE" "C1ORF49 WILD-TYPE" 
       TCGA-44-6778        TCGA-44-6779        TCGA-49-4486        TCGA-49-4487 
"C1ORF49 WILD-TYPE" "C1ORF49 WILD-TYPE" "C1ORF49 WILD-TYPE" "C1ORF49 WILD-TYPE" 
       TCGA-49-4488        TCGA-49-4490        TCGA-49-4494        TCGA-49-4501 
"C1ORF49 WILD-TYPE" "C1ORF49 WILD-TYPE" "C1ORF49 WILD-TYPE" "C1ORF49 WILD-TYPE" 
       TCGA-49-4505        TCGA-49-4506        TCGA-49-4507        TCGA-49-4510 
"C1ORF49 WILD-TYPE" "C1ORF49 WILD-TYPE" "C1ORF49 WILD-TYPE" "C1ORF49 WILD-TYPE" 
       TCGA-49-4512        TCGA-49-4514        TCGA-49-6742        TCGA-49-6743 
"C1ORF49 WILD-TYPE" "C1ORF49 WILD-TYPE" "C1ORF49 WILD-TYPE" "C1ORF49 WILD-TYPE" 
       TCGA-49-6744        TCGA-49-6745        TCGA-50-5044        TCGA-50-5045 
"C1ORF49 WILD-TYPE" "C1ORF49 WILD-TYPE" "C1ORF49 WILD-TYPE" "C1ORF49 WILD-TYPE" 
       TCGA-50-5049        TCGA-50-5051        TCGA-50-5055        TCGA-50-5066 
"C1ORF49 WILD-TYPE" "C1ORF49 WILD-TYPE" "C1ORF49 WILD-TYPE" "C1ORF49 WILD-TYPE" 
       TCGA-50-5068        TCGA-50-5072        TCGA-50-5930        TCGA-50-5931 
"C1ORF49 WILD-TYPE" "C1ORF49 WILD-TYPE" "C1ORF49 WILD-TYPE" "C1ORF49 WILD-TYPE" 
       TCGA-50-5932        TCGA-50-5933        TCGA-50-5935        TCGA-50-5936 
"C1ORF49 WILD-TYPE" "C1ORF49 WILD-TYPE" "C1ORF49 WILD-TYPE" "C1ORF49 WILD-TYPE" 
       TCGA-50-5939        TCGA-50-5941        TCGA-50-5942        TCGA-50-5944 
"C1ORF49 WILD-TYPE" "C1ORF49 WILD-TYPE" "C1ORF49 WILD-TYPE" "C1ORF49 WILD-TYPE" 
       TCGA-50-5946        TCGA-50-6590        TCGA-50-6591        TCGA-50-6592 
"C1ORF49 WILD-TYPE" "C1ORF49 WILD-TYPE" "C1ORF49 WILD-TYPE" "C1ORF49 WILD-TYPE" 
       TCGA-50-6593        TCGA-50-6594        TCGA-50-6595        TCGA-50-6597 
"C1ORF49 WILD-TYPE" "C1ORF49 WILD-TYPE" "C1ORF49 WILD-TYPE" "C1ORF49 WILD-TYPE" 
       TCGA-55-1592        TCGA-55-1594        TCGA-55-1595        TCGA-55-1596 
"C1ORF49 WILD-TYPE" "C1ORF49 WILD-TYPE" "C1ORF49 WILD-TYPE" "C1ORF49 WILD-TYPE" 
       TCGA-55-5899        TCGA-55-6543        TCGA-55-6642        TCGA-55-6712 
"C1ORF49 WILD-TYPE" "C1ORF49 WILD-TYPE" "C1ORF49 WILD-TYPE"   "C1ORF49 MUTATED" 
       TCGA-64-1676        TCGA-64-1677        TCGA-64-1678        TCGA-64-1680 
"C1ORF49 WILD-TYPE"   "C1ORF49 MUTATED" "C1ORF49 WILD-TYPE" "C1ORF49 WILD-TYPE" 
       TCGA-64-5774        TCGA-64-5775        TCGA-64-5778        TCGA-64-5779 
"C1ORF49 WILD-TYPE" "C1ORF49 WILD-TYPE"   "C1ORF49 MUTATED" "C1ORF49 WILD-TYPE" 
       TCGA-64-5781        TCGA-64-5815        TCGA-67-3770        TCGA-67-3771 
"C1ORF49 WILD-TYPE" "C1ORF49 WILD-TYPE" "C1ORF49 WILD-TYPE" "C1ORF49 WILD-TYPE" 
       TCGA-67-3772        TCGA-67-3773        TCGA-67-3774        TCGA-67-6215 
"C1ORF49 WILD-TYPE" "C1ORF49 WILD-TYPE" "C1ORF49 WILD-TYPE" "C1ORF49 WILD-TYPE" 
       TCGA-67-6216        TCGA-67-6217        TCGA-71-6725        TCGA-73-4658 
"C1ORF49 WILD-TYPE" "C1ORF49 WILD-TYPE" "C1ORF49 WILD-TYPE" "C1ORF49 WILD-TYPE" 
       TCGA-73-4659        TCGA-73-4662        TCGA-73-4666        TCGA-73-4668 
"C1ORF49 WILD-TYPE" "C1ORF49 WILD-TYPE" "C1ORF49 WILD-TYPE" "C1ORF49 WILD-TYPE" 
       TCGA-73-4670        TCGA-73-4675        TCGA-73-4676        TCGA-73-4677 
"C1ORF49 WILD-TYPE" "C1ORF49 WILD-TYPE" "C1ORF49 WILD-TYPE" "C1ORF49 WILD-TYPE" 
       TCGA-91-6828        TCGA-91-6829        TCGA-91-6831        TCGA-91-6835 
"C1ORF49 WILD-TYPE" "C1ORF49 WILD-TYPE" "C1ORF49 WILD-TYPE" "C1ORF49 WILD-TYPE" 
       TCGA-91-6836 
  "C1ORF49 MUTATED" 
       TCGA-05-4249        TCGA-05-4250        TCGA-05-4382        TCGA-05-4384 
"C1ORF49 WILD-TYPE" "C1ORF49 WILD-TYPE" "C1ORF49 WILD-TYPE" "C1ORF49 WILD-TYPE" 
       TCGA-05-4390        TCGA-05-4396        TCGA-05-4397        TCGA-05-4398 
"C1ORF49 WILD-TYPE" "C1ORF49 WILD-TYPE" "C1ORF49 WILD-TYPE" "C1ORF49 WILD-TYPE" 
       TCGA-05-4402        TCGA-05-4405        TCGA-05-4415        TCGA-05-4417 
"C1ORF49 WILD-TYPE" "C1ORF49 WILD-TYPE" "C1ORF49 WILD-TYPE" "C1ORF49 WILD-TYPE" 
       TCGA-05-4418        TCGA-05-4420        TCGA-05-4424        TCGA-05-4426 
"C1ORF49 WILD-TYPE" "C1ORF49 WILD-TYPE"   "C1ORF49 MUTATED" "C1ORF49 WILD-TYPE" 
       TCGA-05-4427        TCGA-05-4430        TCGA-05-4432        TCGA-05-4433 
"C1ORF49 WILD-TYPE" "C1ORF49 WILD-TYPE" "C1ORF49 WILD-TYPE" "C1ORF49 WILD-TYPE" 
       TCGA-05-4434        TCGA-05-5420        TCGA-05-5423        TCGA-05-5425 
"C1ORF49 WILD-TYPE" "C1ORF49 WILD-TYPE" "C1ORF49 WILD-TYPE" "C1ORF49 WILD-TYPE" 
       TCGA-05-5429        TCGA-05-5715        TCGA-35-3615        TCGA-35-4122 
"C1ORF49 WILD-TYPE" "C1ORF49 WILD-TYPE" "C1ORF49 WILD-TYPE" "C1ORF49 WILD-TYPE" 
       TCGA-35-4123        TCGA-35-5375        TCGA-38-4625        TCGA-38-4626 
"C1ORF49 WILD-TYPE"   "C1ORF49 MUTATED" "C1ORF49 WILD-TYPE" "C1ORF49 WILD-TYPE" 
       TCGA-38-4627        TCGA-38-4628        TCGA-38-4629        TCGA-38-4630 
"C1ORF49 WILD-TYPE" "C1ORF49 WILD-TYPE" "C1ORF49 WILD-TYPE" "C1ORF49 WILD-TYPE" 
       TCGA-38-4631        TCGA-38-4632        TCGA-38-6178        TCGA-44-2655 
"C1ORF49 WILD-TYPE" "C1ORF49 WILD-TYPE" "C1ORF49 WILD-TYPE" "C1ORF49 WILD-TYPE" 
       TCGA-44-2656        TCGA-44-2657        TCGA-44-2659        TCGA-44-2661 
"C1ORF49 WILD-TYPE" "C1ORF49 WILD-TYPE" "C1ORF49 WILD-TYPE" "C1ORF49 WILD-TYPE" 
       TCGA-44-2662        TCGA-44-2665        TCGA-44-2666        TCGA-44-2668 
"C1ORF49 WILD-TYPE" "C1ORF49 WILD-TYPE" "C1ORF49 WILD-TYPE" "C1ORF49 WILD-TYPE" 
       TCGA-44-3396        TCGA-44-3398        TCGA-44-3918        TCGA-44-3919 
"C1ORF49 WILD-TYPE" "C1ORF49 WILD-TYPE" "C1ORF49 WILD-TYPE" "C1ORF49 WILD-TYPE" 
       TCGA-44-4112        TCGA-44-5643        TCGA-44-5645        TCGA-44-6144 
"C1ORF49 WILD-TYPE" "C1ORF49 WILD-TYPE" "C1ORF49 WILD-TYPE" "C1ORF49 WILD-TYPE" 
       TCGA-44-6145        TCGA-44-6146        TCGA-44-6147        TCGA-44-6148 
"C1ORF49 WILD-TYPE" "C1ORF49 WILD-TYPE" "C1ORF49 WILD-TYPE" "C1ORF49 WILD-TYPE" 
       TCGA-44-6774        TCGA-44-6775        TCGA-44-6776        TCGA-44-6777 
"C1ORF49 WILD-TYPE" "C1ORF49 WILD-TYPE" "C1ORF49 WILD-TYPE" "C1ORF49 WILD-TYPE" 
       TCGA-44-6778        TCGA-44-6779        TCGA-49-4486        TCGA-49-4487 
"C1ORF49 WILD-TYPE" "C1ORF49 WILD-TYPE" "C1ORF49 WILD-TYPE" "C1ORF49 WILD-TYPE" 
       TCGA-49-4488        TCGA-49-4490        TCGA-49-4494        TCGA-49-4501 
"C1ORF49 WILD-TYPE" "C1ORF49 WILD-TYPE" "C1ORF49 WILD-TYPE" "C1ORF49 WILD-TYPE" 
       TCGA-49-4505        TCGA-49-4506        TCGA-49-4507        TCGA-49-4510 
"C1ORF49 WILD-TYPE" "C1ORF49 WILD-TYPE" "C1ORF49 WILD-TYPE" "C1ORF49 WILD-TYPE" 
       TCGA-49-4512        TCGA-49-4514        TCGA-49-6742        TCGA-49-6743 
"C1ORF49 WILD-TYPE" "C1ORF49 WILD-TYPE" "C1ORF49 WILD-TYPE" "C1ORF49 WILD-TYPE" 
       TCGA-49-6744        TCGA-49-6745        TCGA-50-5044        TCGA-50-5045 
"C1ORF49 WILD-TYPE" "C1ORF49 WILD-TYPE" "C1ORF49 WILD-TYPE" "C1ORF49 WILD-TYPE" 
       TCGA-50-5049        TCGA-50-5051        TCGA-50-5055        TCGA-50-5066 
"C1ORF49 WILD-TYPE" "C1ORF49 WILD-TYPE" "C1ORF49 WILD-TYPE" "C1ORF49 WILD-TYPE" 
       TCGA-50-5068        TCGA-50-5072        TCGA-50-5930        TCGA-50-5931 
"C1ORF49 WILD-TYPE" "C1ORF49 WILD-TYPE" "C1ORF49 WILD-TYPE" "C1ORF49 WILD-TYPE" 
       TCGA-50-5932        TCGA-50-5933        TCGA-50-5935        TCGA-50-5936 
"C1ORF49 WILD-TYPE" "C1ORF49 WILD-TYPE" "C1ORF49 WILD-TYPE" "C1ORF49 WILD-TYPE" 
       TCGA-50-5939        TCGA-50-5941        TCGA-50-5942        TCGA-50-5944 
"C1ORF49 WILD-TYPE" "C1ORF49 WILD-TYPE" "C1ORF49 WILD-TYPE" "C1ORF49 WILD-TYPE" 
       TCGA-50-5946        TCGA-50-6590        TCGA-50-6591        TCGA-50-6592 
"C1ORF49 WILD-TYPE" "C1ORF49 WILD-TYPE" "C1ORF49 WILD-TYPE" "C1ORF49 WILD-TYPE" 
       TCGA-50-6593        TCGA-50-6594        TCGA-50-6595        TCGA-50-6597 
"C1ORF49 WILD-TYPE" "C1ORF49 WILD-TYPE" "C1ORF49 WILD-TYPE" "C1ORF49 WILD-TYPE" 
       TCGA-55-1592        TCGA-55-1594        TCGA-55-1595        TCGA-55-1596 
"C1ORF49 WILD-TYPE" "C1ORF49 WILD-TYPE" "C1ORF49 WILD-TYPE" "C1ORF49 WILD-TYPE" 
       TCGA-55-5899        TCGA-55-6543        TCGA-55-6642        TCGA-55-6712 
"C1ORF49 WILD-TYPE" "C1ORF49 WILD-TYPE" "C1ORF49 WILD-TYPE"   "C1ORF49 MUTATED" 
       TCGA-64-1676        TCGA-64-1677        TCGA-64-1678        TCGA-64-1680 
"C1ORF49 WILD-TYPE"   "C1ORF49 MUTATED" "C1ORF49 WILD-TYPE" "C1ORF49 WILD-TYPE" 
       TCGA-64-5774        TCGA-64-5775        TCGA-64-5778        TCGA-64-5779 
"C1ORF49 WILD-TYPE" "C1ORF49 WILD-TYPE"   "C1ORF49 MUTATED" "C1ORF49 WILD-TYPE" 
       TCGA-64-5781        TCGA-64-5815        TCGA-67-3770        TCGA-67-3771 
"C1ORF49 WILD-TYPE" "C1ORF49 WILD-TYPE" "C1ORF49 WILD-TYPE" "C1ORF49 WILD-TYPE" 
       TCGA-67-3772        TCGA-67-3773        TCGA-67-3774        TCGA-67-6215 
"C1ORF49 WILD-TYPE" "C1ORF49 WILD-TYPE" "C1ORF49 WILD-TYPE" "C1ORF49 WILD-TYPE" 
       TCGA-67-6216        TCGA-67-6217        TCGA-71-6725        TCGA-73-4658 
"C1ORF49 WILD-TYPE" "C1ORF49 WILD-TYPE" "C1ORF49 WILD-TYPE" "C1ORF49 WILD-TYPE" 
       TCGA-73-4659        TCGA-73-4662        TCGA-73-4666        TCGA-73-4668 
"C1ORF49 WILD-TYPE" "C1ORF49 WILD-TYPE" "C1ORF49 WILD-TYPE" "C1ORF49 WILD-TYPE" 
       TCGA-73-4670        TCGA-73-4675        TCGA-73-4676        TCGA-73-4677 
"C1ORF49 WILD-TYPE" "C1ORF49 WILD-TYPE" "C1ORF49 WILD-TYPE" "C1ORF49 WILD-TYPE" 
       TCGA-91-6828        TCGA-91-6829        TCGA-91-6831        TCGA-91-6835 
"C1ORF49 WILD-TYPE" "C1ORF49 WILD-TYPE" "C1ORF49 WILD-TYPE" "C1ORF49 WILD-TYPE" 
       TCGA-91-6836 
  "C1ORF49 MUTATED" 
[1] "hr=" "1.4"
D267V2, continuous
D267V3, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  C1ORF49 MUTATED      2    4
  C1ORF49 WILD-TYPE   91   75
        clus
vv       C1ORF49 MUTATED C1ORF49 WILD-TYPE
  FEMALE               2                91
  MALE                 4                75
D267V4, continuous
D267V5, multiclass
D267V6, multiclass
    clus
vv   C1ORF49 MUTATED C1ORF49 WILD-TYPE
  T1               0                41
  T2               5               103
  T3               1                13
  T4               0                 8
D267V7, multiclass
       clus
vv      C1ORF49 MUTATED C1ORF49 WILD-TYPE
  N0                  3                92
  N1                  1                36
  N2+N3               2                33
D267V8, multiclass
    clus
vv   C1ORF49 MUTATED C1ORF49 WILD-TYPE
  M0               4               133
  M1               0                 9
  MX               2                20
D267V9, multiclass
     clus
vv    C1ORF49 MUTATED C1ORF49 WILD-TYPE
  I                 2                86
  II                1                32
  III               2                37
  IV                0                 9
D267V10, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  C1ORF49 MUTATED      0    6
  C1ORF49 WILD-TYPE   16  150
     clus
vv    C1ORF49 MUTATED C1ORF49 WILD-TYPE
  NO                0                16
  YES               6               150
D267V11, continuous
D267V12, continuous
D267V13, multiclass
                                             clus
vv                                            C1ORF49 MUTATED C1ORF49 WILD-TYPE
  CURRENT REFORMED SMOKER FOR < OR = 15 YEARS               4                58
  CURRENT REFORMED SMOKER FOR > 15 YEARS                    0                46
  CURRENT SMOKER                                            2                26
  LIFELONG NON-SMOKER                                       0                24
D267V14, continuous

Clustering(268) Variable = FRG1 MUTATION ANALYSIS
D268V1, survival
                sevent
clus2             0  1
  FRG1 MUTATED    3  3
  FRG1 WILD-TYPE 96 47
  FRG1 MUTATED FRG1 WILD-TYPE 
             6            143 
  FRG1 MUTATED FRG1 WILD-TYPE 
             3             47 
$`FRG1 MUTATED`
TCGA-05-4390 TCGA-44-2659 TCGA-44-6145 TCGA-50-6594 TCGA-50-6595 TCGA-73-4677 
       37.02        17.39         3.35        12.16         6.21         1.25 

$`FRG1 WILD-TYPE`
TCGA-05-4249 TCGA-05-4250 TCGA-05-4382 TCGA-05-4384 TCGA-05-4396 TCGA-05-4397 
       38.07         3.98        19.92        14.01         9.96        24.03 
TCGA-05-4398 TCGA-05-4402 TCGA-05-4405 TCGA-05-4415 TCGA-05-4417 TCGA-05-4418 
       47.05         8.02        20.05         2.96        14.93         8.98 
TCGA-05-4420 TCGA-05-4424 TCGA-05-4426 TCGA-05-4427 TCGA-05-4430 TCGA-05-4432 
       29.95        30.02        26.01        26.01        25.02        25.02 
TCGA-05-4433 TCGA-05-4434 TCGA-05-5420 TCGA-05-5423 TCGA-05-5425 TCGA-05-5429 
       24.00        15.02         1.02         4.96         2.96         0.99 
TCGA-05-5715 TCGA-35-3615 TCGA-35-4122 TCGA-35-4123 TCGA-35-5375 TCGA-38-4625 
        2.04         0.46         7.36         5.95         8.68        47.61 
TCGA-38-4626 TCGA-38-4627 TCGA-38-4628 TCGA-38-4629 TCGA-38-4630 TCGA-38-4631 
       85.32        37.71        49.02        28.37        35.28        11.64 
TCGA-38-4632 TCGA-38-6178 TCGA-44-2655 TCGA-44-2656 TCGA-44-2657 TCGA-44-2661 
       44.61         5.19        18.87        19.10        13.15         3.39 
TCGA-44-2662 TCGA-44-2665 TCGA-44-2666 TCGA-44-2668 TCGA-44-3396 TCGA-44-3398 
       15.78        13.15         3.19         8.09        10.22         8.32 
TCGA-44-3918 TCGA-44-3919 TCGA-44-4112 TCGA-44-5643 TCGA-44-5645 TCGA-44-6144 
        6.44         6.21         4.60         3.48         6.84         0.30 
TCGA-44-6146 TCGA-44-6147 TCGA-44-6148 TCGA-44-6774 TCGA-44-6775 TCGA-44-6776 
        9.93         7.76         3.12         5.42         2.70        63.72 
TCGA-44-6777 TCGA-44-6778 TCGA-44-6779 TCGA-49-4486 TCGA-49-4487 TCGA-49-4488 
       32.45        36.49        16.41        76.21        28.11        28.57 
TCGA-49-4490 TCGA-49-4494 TCGA-49-4501 TCGA-49-4505 TCGA-49-4506 TCGA-49-4507 
       12.66        35.54        46.72        14.07        32.84         8.81 
TCGA-49-4510 TCGA-49-4512 TCGA-49-4514 TCGA-49-6742 TCGA-49-6743 TCGA-49-6744 
       29.46        29.75        43.20        15.02        12.13        12.99 
TCGA-49-6745 TCGA-50-5044 TCGA-50-5045 TCGA-50-5049 TCGA-50-5051 TCGA-50-5055 
        4.93        20.48        71.47        48.82        14.96        25.81 
TCGA-50-5066 TCGA-50-5068 TCGA-50-5072 TCGA-50-5930 TCGA-50-5931 TCGA-50-5932 
        9.76        49.28         8.05         9.27         8.78        35.87 
TCGA-50-5933 TCGA-50-5935 TCGA-50-5936 TCGA-50-5939 TCGA-50-5941 TCGA-50-5942 
       77.88        21.47         8.45        15.12         9.37         4.44 
TCGA-50-5944 TCGA-50-5946 TCGA-50-6590 TCGA-50-6591 TCGA-50-6592 TCGA-50-6593 
       12.26        11.47        42.31         3.88        25.51        11.05 
TCGA-50-6597 TCGA-55-1592 TCGA-55-1594 TCGA-55-1595 TCGA-55-1596 TCGA-55-5899 
       33.37        23.05        38.73        48.62        45.17         2.86 
TCGA-55-6543 TCGA-55-6642 TCGA-55-6712 TCGA-64-1676 TCGA-64-1677 TCGA-64-1678 
        0.07        32.61         0.79        56.81        20.65        39.09 
TCGA-64-1680 TCGA-64-5774 TCGA-64-5775 TCGA-64-5778 TCGA-64-5779 TCGA-64-5781 
       37.02        83.84         0.10        30.44        16.67        39.52 
TCGA-64-5815 TCGA-67-3770 TCGA-67-3771 TCGA-67-3772 TCGA-67-3773 TCGA-67-3774 
        7.33         0.99         1.97         0.59         2.04         0.59 
TCGA-67-6215 TCGA-67-6216 TCGA-67-6217 TCGA-71-6725 TCGA-73-4658 TCGA-73-4659 
        0.89         0.69        13.87         2.01        52.57        23.38 
TCGA-73-4662 TCGA-73-4666 TCGA-73-4668 TCGA-73-4670 TCGA-73-4675 TCGA-73-4676 
       29.95        20.28        15.35         0.46         1.32         4.01 
TCGA-91-6828 TCGA-91-6829 TCGA-91-6831 TCGA-91-6835 TCGA-91-6836 
        1.22        41.33         1.28         1.15         0.36 

  FRG1 MUTATED FRG1 WILD-TYPE 
          1.25           0.07 
  FRG1 MUTATED FRG1 WILD-TYPE 
         37.02          85.32 
  FRG1 MUTATED FRG1 WILD-TYPE 
         9.185         14.010 
[1] "1.2 - 37.0 (9.2)"  "0.1 - 85.3 (14.0)"
    TCGA-05-4249     TCGA-05-4250     TCGA-05-4382     TCGA-05-4384 
"FRG1 WILD-TYPE" "FRG1 WILD-TYPE" "FRG1 WILD-TYPE" "FRG1 WILD-TYPE" 
    TCGA-05-4390     TCGA-05-4396     TCGA-05-4397     TCGA-05-4398 
  "FRG1 MUTATED" "FRG1 WILD-TYPE" "FRG1 WILD-TYPE" "FRG1 WILD-TYPE" 
    TCGA-05-4402     TCGA-05-4405     TCGA-05-4415     TCGA-05-4417 
"FRG1 WILD-TYPE" "FRG1 WILD-TYPE" "FRG1 WILD-TYPE" "FRG1 WILD-TYPE" 
    TCGA-05-4418     TCGA-05-4420     TCGA-05-4424     TCGA-05-4426 
"FRG1 WILD-TYPE" "FRG1 WILD-TYPE" "FRG1 WILD-TYPE" "FRG1 WILD-TYPE" 
    TCGA-05-4427     TCGA-05-4430     TCGA-05-4432     TCGA-05-4433 
"FRG1 WILD-TYPE" "FRG1 WILD-TYPE" "FRG1 WILD-TYPE" "FRG1 WILD-TYPE" 
    TCGA-05-4434     TCGA-05-5420     TCGA-05-5423     TCGA-05-5425 
"FRG1 WILD-TYPE" "FRG1 WILD-TYPE" "FRG1 WILD-TYPE" "FRG1 WILD-TYPE" 
    TCGA-05-5429     TCGA-05-5715     TCGA-35-3615     TCGA-35-4122 
"FRG1 WILD-TYPE" "FRG1 WILD-TYPE" "FRG1 WILD-TYPE" "FRG1 WILD-TYPE" 
    TCGA-35-4123     TCGA-35-5375     TCGA-38-4625     TCGA-38-4626 
"FRG1 WILD-TYPE" "FRG1 WILD-TYPE" "FRG1 WILD-TYPE" "FRG1 WILD-TYPE" 
    TCGA-38-4627     TCGA-38-4628     TCGA-38-4629     TCGA-38-4630 
"FRG1 WILD-TYPE" "FRG1 WILD-TYPE" "FRG1 WILD-TYPE" "FRG1 WILD-TYPE" 
    TCGA-38-4631     TCGA-38-4632     TCGA-38-6178     TCGA-44-2655 
"FRG1 WILD-TYPE" "FRG1 WILD-TYPE" "FRG1 WILD-TYPE" "FRG1 WILD-TYPE" 
    TCGA-44-2656     TCGA-44-2657     TCGA-44-2659     TCGA-44-2661 
"FRG1 WILD-TYPE" "FRG1 WILD-TYPE"   "FRG1 MUTATED" "FRG1 WILD-TYPE" 
    TCGA-44-2662     TCGA-44-2665     TCGA-44-2666     TCGA-44-2668 
"FRG1 WILD-TYPE" "FRG1 WILD-TYPE" "FRG1 WILD-TYPE" "FRG1 WILD-TYPE" 
    TCGA-44-3396     TCGA-44-3398     TCGA-44-3918     TCGA-44-3919 
"FRG1 WILD-TYPE" "FRG1 WILD-TYPE" "FRG1 WILD-TYPE" "FRG1 WILD-TYPE" 
    TCGA-44-4112     TCGA-44-5643     TCGA-44-5645     TCGA-44-6144 
"FRG1 WILD-TYPE" "FRG1 WILD-TYPE" "FRG1 WILD-TYPE" "FRG1 WILD-TYPE" 
    TCGA-44-6145     TCGA-44-6146     TCGA-44-6147     TCGA-44-6148 
  "FRG1 MUTATED" "FRG1 WILD-TYPE" "FRG1 WILD-TYPE" "FRG1 WILD-TYPE" 
    TCGA-44-6774     TCGA-44-6775     TCGA-44-6776     TCGA-44-6777 
"FRG1 WILD-TYPE" "FRG1 WILD-TYPE" "FRG1 WILD-TYPE" "FRG1 WILD-TYPE" 
    TCGA-44-6778     TCGA-44-6779     TCGA-49-4486     TCGA-49-4487 
"FRG1 WILD-TYPE" "FRG1 WILD-TYPE" "FRG1 WILD-TYPE" "FRG1 WILD-TYPE" 
    TCGA-49-4488     TCGA-49-4490     TCGA-49-4494     TCGA-49-4501 
"FRG1 WILD-TYPE" "FRG1 WILD-TYPE" "FRG1 WILD-TYPE" "FRG1 WILD-TYPE" 
    TCGA-49-4505     TCGA-49-4506     TCGA-49-4507     TCGA-49-4510 
"FRG1 WILD-TYPE" "FRG1 WILD-TYPE" "FRG1 WILD-TYPE" "FRG1 WILD-TYPE" 
    TCGA-49-4512     TCGA-49-4514     TCGA-49-6742     TCGA-49-6743 
"FRG1 WILD-TYPE" "FRG1 WILD-TYPE" "FRG1 WILD-TYPE" "FRG1 WILD-TYPE" 
    TCGA-49-6744     TCGA-49-6745     TCGA-50-5044     TCGA-50-5045 
"FRG1 WILD-TYPE" "FRG1 WILD-TYPE" "FRG1 WILD-TYPE" "FRG1 WILD-TYPE" 
    TCGA-50-5049     TCGA-50-5051     TCGA-50-5055     TCGA-50-5066 
"FRG1 WILD-TYPE" "FRG1 WILD-TYPE" "FRG1 WILD-TYPE" "FRG1 WILD-TYPE" 
    TCGA-50-5068     TCGA-50-5072     TCGA-50-5930     TCGA-50-5931 
"FRG1 WILD-TYPE" "FRG1 WILD-TYPE" "FRG1 WILD-TYPE" "FRG1 WILD-TYPE" 
    TCGA-50-5932     TCGA-50-5933     TCGA-50-5935     TCGA-50-5936 
"FRG1 WILD-TYPE" "FRG1 WILD-TYPE" "FRG1 WILD-TYPE" "FRG1 WILD-TYPE" 
    TCGA-50-5939     TCGA-50-5941     TCGA-50-5942     TCGA-50-5944 
"FRG1 WILD-TYPE" "FRG1 WILD-TYPE" "FRG1 WILD-TYPE" "FRG1 WILD-TYPE" 
    TCGA-50-5946     TCGA-50-6590     TCGA-50-6591     TCGA-50-6592 
"FRG1 WILD-TYPE" "FRG1 WILD-TYPE" "FRG1 WILD-TYPE" "FRG1 WILD-TYPE" 
    TCGA-50-6593     TCGA-50-6594     TCGA-50-6595     TCGA-50-6597 
"FRG1 WILD-TYPE"   "FRG1 MUTATED"   "FRG1 MUTATED" "FRG1 WILD-TYPE" 
    TCGA-55-1592     TCGA-55-1594     TCGA-55-1595     TCGA-55-1596 
"FRG1 WILD-TYPE" "FRG1 WILD-TYPE" "FRG1 WILD-TYPE" "FRG1 WILD-TYPE" 
    TCGA-55-5899     TCGA-55-6543     TCGA-55-6642     TCGA-55-6712 
"FRG1 WILD-TYPE" "FRG1 WILD-TYPE" "FRG1 WILD-TYPE" "FRG1 WILD-TYPE" 
    TCGA-64-1676     TCGA-64-1677     TCGA-64-1678     TCGA-64-1680 
"FRG1 WILD-TYPE" "FRG1 WILD-TYPE" "FRG1 WILD-TYPE" "FRG1 WILD-TYPE" 
    TCGA-64-5774     TCGA-64-5775     TCGA-64-5778     TCGA-64-5779 
"FRG1 WILD-TYPE" "FRG1 WILD-TYPE" "FRG1 WILD-TYPE" "FRG1 WILD-TYPE" 
    TCGA-64-5781     TCGA-64-5815     TCGA-67-3770     TCGA-67-3771 
"FRG1 WILD-TYPE" "FRG1 WILD-TYPE" "FRG1 WILD-TYPE" "FRG1 WILD-TYPE" 
    TCGA-67-3772     TCGA-67-3773     TCGA-67-3774     TCGA-67-6215 
"FRG1 WILD-TYPE" "FRG1 WILD-TYPE" "FRG1 WILD-TYPE" "FRG1 WILD-TYPE" 
    TCGA-67-6216     TCGA-67-6217     TCGA-71-6725     TCGA-73-4658 
"FRG1 WILD-TYPE" "FRG1 WILD-TYPE" "FRG1 WILD-TYPE" "FRG1 WILD-TYPE" 
    TCGA-73-4659     TCGA-73-4662     TCGA-73-4666     TCGA-73-4668 
"FRG1 WILD-TYPE" "FRG1 WILD-TYPE" "FRG1 WILD-TYPE" "FRG1 WILD-TYPE" 
    TCGA-73-4670     TCGA-73-4675     TCGA-73-4676     TCGA-73-4677 
"FRG1 WILD-TYPE" "FRG1 WILD-TYPE" "FRG1 WILD-TYPE"   "FRG1 MUTATED" 
    TCGA-91-6828     TCGA-91-6829     TCGA-91-6831     TCGA-91-6835 
"FRG1 WILD-TYPE" "FRG1 WILD-TYPE" "FRG1 WILD-TYPE" "FRG1 WILD-TYPE" 
    TCGA-91-6836 
"FRG1 WILD-TYPE" 
    TCGA-05-4249     TCGA-05-4250     TCGA-05-4382     TCGA-05-4384 
"FRG1 WILD-TYPE" "FRG1 WILD-TYPE" "FRG1 WILD-TYPE" "FRG1 WILD-TYPE" 
    TCGA-05-4390     TCGA-05-4396     TCGA-05-4397     TCGA-05-4398 
  "FRG1 MUTATED" "FRG1 WILD-TYPE" "FRG1 WILD-TYPE" "FRG1 WILD-TYPE" 
    TCGA-05-4402     TCGA-05-4405     TCGA-05-4415     TCGA-05-4417 
"FRG1 WILD-TYPE" "FRG1 WILD-TYPE" "FRG1 WILD-TYPE" "FRG1 WILD-TYPE" 
    TCGA-05-4418     TCGA-05-4420     TCGA-05-4424     TCGA-05-4426 
"FRG1 WILD-TYPE" "FRG1 WILD-TYPE" "FRG1 WILD-TYPE" "FRG1 WILD-TYPE" 
    TCGA-05-4427     TCGA-05-4430     TCGA-05-4432     TCGA-05-4433 
"FRG1 WILD-TYPE" "FRG1 WILD-TYPE" "FRG1 WILD-TYPE" "FRG1 WILD-TYPE" 
    TCGA-05-4434     TCGA-05-5420     TCGA-05-5423     TCGA-05-5425 
"FRG1 WILD-TYPE" "FRG1 WILD-TYPE" "FRG1 WILD-TYPE" "FRG1 WILD-TYPE" 
    TCGA-05-5429     TCGA-05-5715     TCGA-35-3615     TCGA-35-4122 
"FRG1 WILD-TYPE" "FRG1 WILD-TYPE" "FRG1 WILD-TYPE" "FRG1 WILD-TYPE" 
    TCGA-35-4123     TCGA-35-5375     TCGA-38-4625     TCGA-38-4626 
"FRG1 WILD-TYPE" "FRG1 WILD-TYPE" "FRG1 WILD-TYPE" "FRG1 WILD-TYPE" 
    TCGA-38-4627     TCGA-38-4628     TCGA-38-4629     TCGA-38-4630 
"FRG1 WILD-TYPE" "FRG1 WILD-TYPE" "FRG1 WILD-TYPE" "FRG1 WILD-TYPE" 
    TCGA-38-4631     TCGA-38-4632     TCGA-38-6178     TCGA-44-2655 
"FRG1 WILD-TYPE" "FRG1 WILD-TYPE" "FRG1 WILD-TYPE" "FRG1 WILD-TYPE" 
    TCGA-44-2656     TCGA-44-2657     TCGA-44-2659     TCGA-44-2661 
"FRG1 WILD-TYPE" "FRG1 WILD-TYPE"   "FRG1 MUTATED" "FRG1 WILD-TYPE" 
    TCGA-44-2662     TCGA-44-2665     TCGA-44-2666     TCGA-44-2668 
"FRG1 WILD-TYPE" "FRG1 WILD-TYPE" "FRG1 WILD-TYPE" "FRG1 WILD-TYPE" 
    TCGA-44-3396     TCGA-44-3398     TCGA-44-3918     TCGA-44-3919 
"FRG1 WILD-TYPE" "FRG1 WILD-TYPE" "FRG1 WILD-TYPE" "FRG1 WILD-TYPE" 
    TCGA-44-4112     TCGA-44-5643     TCGA-44-5645     TCGA-44-6144 
"FRG1 WILD-TYPE" "FRG1 WILD-TYPE" "FRG1 WILD-TYPE" "FRG1 WILD-TYPE" 
    TCGA-44-6145     TCGA-44-6146     TCGA-44-6147     TCGA-44-6148 
  "FRG1 MUTATED" "FRG1 WILD-TYPE" "FRG1 WILD-TYPE" "FRG1 WILD-TYPE" 
    TCGA-44-6774     TCGA-44-6775     TCGA-44-6776     TCGA-44-6777 
"FRG1 WILD-TYPE" "FRG1 WILD-TYPE" "FRG1 WILD-TYPE" "FRG1 WILD-TYPE" 
    TCGA-44-6778     TCGA-44-6779     TCGA-49-4486     TCGA-49-4487 
"FRG1 WILD-TYPE" "FRG1 WILD-TYPE" "FRG1 WILD-TYPE" "FRG1 WILD-TYPE" 
    TCGA-49-4488     TCGA-49-4490     TCGA-49-4494     TCGA-49-4501 
"FRG1 WILD-TYPE" "FRG1 WILD-TYPE" "FRG1 WILD-TYPE" "FRG1 WILD-TYPE" 
    TCGA-49-4505     TCGA-49-4506     TCGA-49-4507     TCGA-49-4510 
"FRG1 WILD-TYPE" "FRG1 WILD-TYPE" "FRG1 WILD-TYPE" "FRG1 WILD-TYPE" 
    TCGA-49-4512     TCGA-49-4514     TCGA-49-6742     TCGA-49-6743 
"FRG1 WILD-TYPE" "FRG1 WILD-TYPE" "FRG1 WILD-TYPE" "FRG1 WILD-TYPE" 
    TCGA-49-6744     TCGA-49-6745     TCGA-50-5044     TCGA-50-5045 
"FRG1 WILD-TYPE" "FRG1 WILD-TYPE" "FRG1 WILD-TYPE" "FRG1 WILD-TYPE" 
    TCGA-50-5049     TCGA-50-5051     TCGA-50-5055     TCGA-50-5066 
"FRG1 WILD-TYPE" "FRG1 WILD-TYPE" "FRG1 WILD-TYPE" "FRG1 WILD-TYPE" 
    TCGA-50-5068     TCGA-50-5072     TCGA-50-5930     TCGA-50-5931 
"FRG1 WILD-TYPE" "FRG1 WILD-TYPE" "FRG1 WILD-TYPE" "FRG1 WILD-TYPE" 
    TCGA-50-5932     TCGA-50-5933     TCGA-50-5935     TCGA-50-5936 
"FRG1 WILD-TYPE" "FRG1 WILD-TYPE" "FRG1 WILD-TYPE" "FRG1 WILD-TYPE" 
    TCGA-50-5939     TCGA-50-5941     TCGA-50-5942     TCGA-50-5944 
"FRG1 WILD-TYPE" "FRG1 WILD-TYPE" "FRG1 WILD-TYPE" "FRG1 WILD-TYPE" 
    TCGA-50-5946     TCGA-50-6590     TCGA-50-6591     TCGA-50-6592 
"FRG1 WILD-TYPE" "FRG1 WILD-TYPE" "FRG1 WILD-TYPE" "FRG1 WILD-TYPE" 
    TCGA-50-6593     TCGA-50-6594     TCGA-50-6595     TCGA-50-6597 
"FRG1 WILD-TYPE"   "FRG1 MUTATED"   "FRG1 MUTATED" "FRG1 WILD-TYPE" 
    TCGA-55-1592     TCGA-55-1594     TCGA-55-1595     TCGA-55-1596 
"FRG1 WILD-TYPE" "FRG1 WILD-TYPE" "FRG1 WILD-TYPE" "FRG1 WILD-TYPE" 
    TCGA-55-5899     TCGA-55-6543     TCGA-55-6642     TCGA-55-6712 
"FRG1 WILD-TYPE" "FRG1 WILD-TYPE" "FRG1 WILD-TYPE" "FRG1 WILD-TYPE" 
    TCGA-64-1676     TCGA-64-1677     TCGA-64-1678     TCGA-64-1680 
"FRG1 WILD-TYPE" "FRG1 WILD-TYPE" "FRG1 WILD-TYPE" "FRG1 WILD-TYPE" 
    TCGA-64-5774     TCGA-64-5775     TCGA-64-5778     TCGA-64-5779 
"FRG1 WILD-TYPE" "FRG1 WILD-TYPE" "FRG1 WILD-TYPE" "FRG1 WILD-TYPE" 
    TCGA-64-5781     TCGA-64-5815     TCGA-67-3770     TCGA-67-3771 
"FRG1 WILD-TYPE" "FRG1 WILD-TYPE" "FRG1 WILD-TYPE" "FRG1 WILD-TYPE" 
    TCGA-67-3772     TCGA-67-3773     TCGA-67-3774     TCGA-67-6215 
"FRG1 WILD-TYPE" "FRG1 WILD-TYPE" "FRG1 WILD-TYPE" "FRG1 WILD-TYPE" 
    TCGA-67-6216     TCGA-67-6217     TCGA-71-6725     TCGA-73-4658 
"FRG1 WILD-TYPE" "FRG1 WILD-TYPE" "FRG1 WILD-TYPE" "FRG1 WILD-TYPE" 
    TCGA-73-4659     TCGA-73-4662     TCGA-73-4666     TCGA-73-4668 
"FRG1 WILD-TYPE" "FRG1 WILD-TYPE" "FRG1 WILD-TYPE" "FRG1 WILD-TYPE" 
    TCGA-73-4670     TCGA-73-4675     TCGA-73-4676     TCGA-73-4677 
"FRG1 WILD-TYPE" "FRG1 WILD-TYPE" "FRG1 WILD-TYPE"   "FRG1 MUTATED" 
    TCGA-91-6828     TCGA-91-6829     TCGA-91-6831     TCGA-91-6835 
"FRG1 WILD-TYPE" "FRG1 WILD-TYPE" "FRG1 WILD-TYPE" "FRG1 WILD-TYPE" 
    TCGA-91-6836 
"FRG1 WILD-TYPE" 
    TCGA-05-4249     TCGA-05-4250     TCGA-05-4382     TCGA-05-4384 
"FRG1 WILD-TYPE" "FRG1 WILD-TYPE" "FRG1 WILD-TYPE" "FRG1 WILD-TYPE" 
    TCGA-05-4390     TCGA-05-4396     TCGA-05-4397     TCGA-05-4398 
  "FRG1 MUTATED" "FRG1 WILD-TYPE" "FRG1 WILD-TYPE" "FRG1 WILD-TYPE" 
    TCGA-05-4402     TCGA-05-4405     TCGA-05-4415     TCGA-05-4417 
"FRG1 WILD-TYPE" "FRG1 WILD-TYPE" "FRG1 WILD-TYPE" "FRG1 WILD-TYPE" 
    TCGA-05-4418     TCGA-05-4420     TCGA-05-4424     TCGA-05-4426 
"FRG1 WILD-TYPE" "FRG1 WILD-TYPE" "FRG1 WILD-TYPE" "FRG1 WILD-TYPE" 
    TCGA-05-4427     TCGA-05-4430     TCGA-05-4432     TCGA-05-4433 
"FRG1 WILD-TYPE" "FRG1 WILD-TYPE" "FRG1 WILD-TYPE" "FRG1 WILD-TYPE" 
    TCGA-05-4434     TCGA-05-5420     TCGA-05-5423     TCGA-05-5425 
"FRG1 WILD-TYPE" "FRG1 WILD-TYPE" "FRG1 WILD-TYPE" "FRG1 WILD-TYPE" 
    TCGA-05-5429     TCGA-05-5715     TCGA-35-3615     TCGA-35-4122 
"FRG1 WILD-TYPE" "FRG1 WILD-TYPE" "FRG1 WILD-TYPE" "FRG1 WILD-TYPE" 
    TCGA-35-4123     TCGA-35-5375     TCGA-38-4625     TCGA-38-4626 
"FRG1 WILD-TYPE" "FRG1 WILD-TYPE" "FRG1 WILD-TYPE" "FRG1 WILD-TYPE" 
    TCGA-38-4627     TCGA-38-4628     TCGA-38-4629     TCGA-38-4630 
"FRG1 WILD-TYPE" "FRG1 WILD-TYPE" "FRG1 WILD-TYPE" "FRG1 WILD-TYPE" 
    TCGA-38-4631     TCGA-38-4632     TCGA-38-6178     TCGA-44-2655 
"FRG1 WILD-TYPE" "FRG1 WILD-TYPE" "FRG1 WILD-TYPE" "FRG1 WILD-TYPE" 
    TCGA-44-2656     TCGA-44-2657     TCGA-44-2659     TCGA-44-2661 
"FRG1 WILD-TYPE" "FRG1 WILD-TYPE"   "FRG1 MUTATED" "FRG1 WILD-TYPE" 
    TCGA-44-2662     TCGA-44-2665     TCGA-44-2666     TCGA-44-2668 
"FRG1 WILD-TYPE" "FRG1 WILD-TYPE" "FRG1 WILD-TYPE" "FRG1 WILD-TYPE" 
    TCGA-44-3396     TCGA-44-3398     TCGA-44-3918     TCGA-44-3919 
"FRG1 WILD-TYPE" "FRG1 WILD-TYPE" "FRG1 WILD-TYPE" "FRG1 WILD-TYPE" 
    TCGA-44-4112     TCGA-44-5643     TCGA-44-5645     TCGA-44-6144 
"FRG1 WILD-TYPE" "FRG1 WILD-TYPE" "FRG1 WILD-TYPE" "FRG1 WILD-TYPE" 
    TCGA-44-6145     TCGA-44-6146     TCGA-44-6147     TCGA-44-6148 
  "FRG1 MUTATED" "FRG1 WILD-TYPE" "FRG1 WILD-TYPE" "FRG1 WILD-TYPE" 
    TCGA-44-6774     TCGA-44-6775     TCGA-44-6776     TCGA-44-6777 
"FRG1 WILD-TYPE" "FRG1 WILD-TYPE" "FRG1 WILD-TYPE" "FRG1 WILD-TYPE" 
    TCGA-44-6778     TCGA-44-6779     TCGA-49-4486     TCGA-49-4487 
"FRG1 WILD-TYPE" "FRG1 WILD-TYPE" "FRG1 WILD-TYPE" "FRG1 WILD-TYPE" 
    TCGA-49-4488     TCGA-49-4490     TCGA-49-4494     TCGA-49-4501 
"FRG1 WILD-TYPE" "FRG1 WILD-TYPE" "FRG1 WILD-TYPE" "FRG1 WILD-TYPE" 
    TCGA-49-4505     TCGA-49-4506     TCGA-49-4507     TCGA-49-4510 
"FRG1 WILD-TYPE" "FRG1 WILD-TYPE" "FRG1 WILD-TYPE" "FRG1 WILD-TYPE" 
    TCGA-49-4512     TCGA-49-4514     TCGA-49-6742     TCGA-49-6743 
"FRG1 WILD-TYPE" "FRG1 WILD-TYPE" "FRG1 WILD-TYPE" "FRG1 WILD-TYPE" 
    TCGA-49-6744     TCGA-49-6745     TCGA-50-5044     TCGA-50-5045 
"FRG1 WILD-TYPE" "FRG1 WILD-TYPE" "FRG1 WILD-TYPE" "FRG1 WILD-TYPE" 
    TCGA-50-5049     TCGA-50-5051     TCGA-50-5055     TCGA-50-5066 
"FRG1 WILD-TYPE" "FRG1 WILD-TYPE" "FRG1 WILD-TYPE" "FRG1 WILD-TYPE" 
    TCGA-50-5068     TCGA-50-5072     TCGA-50-5930     TCGA-50-5931 
"FRG1 WILD-TYPE" "FRG1 WILD-TYPE" "FRG1 WILD-TYPE" "FRG1 WILD-TYPE" 
    TCGA-50-5932     TCGA-50-5933     TCGA-50-5935     TCGA-50-5936 
"FRG1 WILD-TYPE" "FRG1 WILD-TYPE" "FRG1 WILD-TYPE" "FRG1 WILD-TYPE" 
    TCGA-50-5939     TCGA-50-5941     TCGA-50-5942     TCGA-50-5944 
"FRG1 WILD-TYPE" "FRG1 WILD-TYPE" "FRG1 WILD-TYPE" "FRG1 WILD-TYPE" 
    TCGA-50-5946     TCGA-50-6590     TCGA-50-6591     TCGA-50-6592 
"FRG1 WILD-TYPE" "FRG1 WILD-TYPE" "FRG1 WILD-TYPE" "FRG1 WILD-TYPE" 
    TCGA-50-6593     TCGA-50-6594     TCGA-50-6595     TCGA-50-6597 
"FRG1 WILD-TYPE"   "FRG1 MUTATED"   "FRG1 MUTATED" "FRG1 WILD-TYPE" 
    TCGA-55-1592     TCGA-55-1594     TCGA-55-1595     TCGA-55-1596 
"FRG1 WILD-TYPE" "FRG1 WILD-TYPE" "FRG1 WILD-TYPE" "FRG1 WILD-TYPE" 
    TCGA-55-5899     TCGA-55-6543     TCGA-55-6642     TCGA-55-6712 
"FRG1 WILD-TYPE" "FRG1 WILD-TYPE" "FRG1 WILD-TYPE" "FRG1 WILD-TYPE" 
    TCGA-64-1676     TCGA-64-1677     TCGA-64-1678     TCGA-64-1680 
"FRG1 WILD-TYPE" "FRG1 WILD-TYPE" "FRG1 WILD-TYPE" "FRG1 WILD-TYPE" 
    TCGA-64-5774     TCGA-64-5775     TCGA-64-5778     TCGA-64-5779 
"FRG1 WILD-TYPE" "FRG1 WILD-TYPE" "FRG1 WILD-TYPE" "FRG1 WILD-TYPE" 
    TCGA-64-5781     TCGA-64-5815     TCGA-67-3770     TCGA-67-3771 
"FRG1 WILD-TYPE" "FRG1 WILD-TYPE" "FRG1 WILD-TYPE" "FRG1 WILD-TYPE" 
    TCGA-67-3772     TCGA-67-3773     TCGA-67-3774     TCGA-67-6215 
"FRG1 WILD-TYPE" "FRG1 WILD-TYPE" "FRG1 WILD-TYPE" "FRG1 WILD-TYPE" 
    TCGA-67-6216     TCGA-67-6217     TCGA-71-6725     TCGA-73-4658 
"FRG1 WILD-TYPE" "FRG1 WILD-TYPE" "FRG1 WILD-TYPE" "FRG1 WILD-TYPE" 
    TCGA-73-4659     TCGA-73-4662     TCGA-73-4666     TCGA-73-4668 
"FRG1 WILD-TYPE" "FRG1 WILD-TYPE" "FRG1 WILD-TYPE" "FRG1 WILD-TYPE" 
    TCGA-73-4670     TCGA-73-4675     TCGA-73-4676     TCGA-73-4677 
"FRG1 WILD-TYPE" "FRG1 WILD-TYPE" "FRG1 WILD-TYPE"   "FRG1 MUTATED" 
    TCGA-91-6828     TCGA-91-6829     TCGA-91-6831     TCGA-91-6835 
"FRG1 WILD-TYPE" "FRG1 WILD-TYPE" "FRG1 WILD-TYPE" "FRG1 WILD-TYPE" 
    TCGA-91-6836 
"FRG1 WILD-TYPE" 
[1] "hr=" "2.7"
D268V2, continuous
D268V3, binary
[1] "tbl2"
                cls
clus             [,1] [,2]
  FRG1 MUTATED      5    1
  FRG1 WILD-TYPE   88   78
        clus
vv       FRG1 MUTATED FRG1 WILD-TYPE
  FEMALE            5             88
  MALE              1             78
D268V4, continuous
D268V5, multiclass
D268V6, multiclass
    clus
vv   FRG1 MUTATED FRG1 WILD-TYPE
  T1            2             39
  T2            3            105
  T3            1             13
  T4            0              8
D268V7, multiclass
       clus
vv      FRG1 MUTATED FRG1 WILD-TYPE
  N0               3             92
  N1               1             36
  N2+N3            2             33
D268V8, multiclass
    clus
vv   FRG1 MUTATED FRG1 WILD-TYPE
  M0            6            131
  M1            0              9
  MX            0             22
D268V9, multiclass
     clus
vv    FRG1 MUTATED FRG1 WILD-TYPE
  I              3             85
  II             1             32
  III            2             37
  IV             0              9
D268V10, binary
[1] "tbl2"
                cls
clus             [,1] [,2]
  FRG1 MUTATED      0    6
  FRG1 WILD-TYPE   16  150
     clus
vv    FRG1 MUTATED FRG1 WILD-TYPE
  NO             0             16
  YES            6            150
D268V11, continuous
D268V12, continuous
D268V13, multiclass
                                             clus
vv                                            FRG1 MUTATED FRG1 WILD-TYPE
  CURRENT REFORMED SMOKER FOR < OR = 15 YEARS            4             58
  CURRENT REFORMED SMOKER FOR > 15 YEARS                 2             44
  CURRENT SMOKER                                         0             28
  LIFELONG NON-SMOKER                                    0             24
D268V14, continuous

Clustering(269) Variable = KRTAP4-11 MUTATION ANALYSIS
D269V1, survival
                     sevent
clus2                  0  1
  KRTAP4-11 MUTATED    3  1
  KRTAP4-11 WILD-TYPE 96 49
  KRTAP4-11 MUTATED KRTAP4-11 WILD-TYPE 
                  4                 145 
  KRTAP4-11 MUTATED KRTAP4-11 WILD-TYPE 
                  1                  49 
$`KRTAP4-11 MUTATED`
TCGA-38-4631 TCGA-44-5645 TCGA-44-6145 TCGA-55-6543 
       11.64         6.84         3.35         0.07 

$`KRTAP4-11 WILD-TYPE`
TCGA-05-4249 TCGA-05-4250 TCGA-05-4382 TCGA-05-4384 TCGA-05-4390 TCGA-05-4396 
       38.07         3.98        19.92        14.01        37.02         9.96 
TCGA-05-4397 TCGA-05-4398 TCGA-05-4402 TCGA-05-4405 TCGA-05-4415 TCGA-05-4417 
       24.03        47.05         8.02        20.05         2.96        14.93 
TCGA-05-4418 TCGA-05-4420 TCGA-05-4424 TCGA-05-4426 TCGA-05-4427 TCGA-05-4430 
        8.98        29.95        30.02        26.01        26.01        25.02 
TCGA-05-4432 TCGA-05-4433 TCGA-05-4434 TCGA-05-5420 TCGA-05-5423 TCGA-05-5425 
       25.02        24.00        15.02         1.02         4.96         2.96 
TCGA-05-5429 TCGA-05-5715 TCGA-35-3615 TCGA-35-4122 TCGA-35-4123 TCGA-35-5375 
        0.99         2.04         0.46         7.36         5.95         8.68 
TCGA-38-4625 TCGA-38-4626 TCGA-38-4627 TCGA-38-4628 TCGA-38-4629 TCGA-38-4630 
       47.61        85.32        37.71        49.02        28.37        35.28 
TCGA-38-4632 TCGA-38-6178 TCGA-44-2655 TCGA-44-2656 TCGA-44-2657 TCGA-44-2659 
       44.61         5.19        18.87        19.10        13.15        17.39 
TCGA-44-2661 TCGA-44-2662 TCGA-44-2665 TCGA-44-2666 TCGA-44-2668 TCGA-44-3396 
        3.39        15.78        13.15         3.19         8.09        10.22 
TCGA-44-3398 TCGA-44-3918 TCGA-44-3919 TCGA-44-4112 TCGA-44-5643 TCGA-44-6144 
        8.32         6.44         6.21         4.60         3.48         0.30 
TCGA-44-6146 TCGA-44-6147 TCGA-44-6148 TCGA-44-6774 TCGA-44-6775 TCGA-44-6776 
        9.93         7.76         3.12         5.42         2.70        63.72 
TCGA-44-6777 TCGA-44-6778 TCGA-44-6779 TCGA-49-4486 TCGA-49-4487 TCGA-49-4488 
       32.45        36.49        16.41        76.21        28.11        28.57 
TCGA-49-4490 TCGA-49-4494 TCGA-49-4501 TCGA-49-4505 TCGA-49-4506 TCGA-49-4507 
       12.66        35.54        46.72        14.07        32.84         8.81 
TCGA-49-4510 TCGA-49-4512 TCGA-49-4514 TCGA-49-6742 TCGA-49-6743 TCGA-49-6744 
       29.46        29.75        43.20        15.02        12.13        12.99 
TCGA-49-6745 TCGA-50-5044 TCGA-50-5045 TCGA-50-5049 TCGA-50-5051 TCGA-50-5055 
        4.93        20.48        71.47        48.82        14.96        25.81 
TCGA-50-5066 TCGA-50-5068 TCGA-50-5072 TCGA-50-5930 TCGA-50-5931 TCGA-50-5932 
        9.76        49.28         8.05         9.27         8.78        35.87 
TCGA-50-5933 TCGA-50-5935 TCGA-50-5936 TCGA-50-5939 TCGA-50-5941 TCGA-50-5942 
       77.88        21.47         8.45        15.12         9.37         4.44 
TCGA-50-5944 TCGA-50-5946 TCGA-50-6590 TCGA-50-6591 TCGA-50-6592 TCGA-50-6593 
       12.26        11.47        42.31         3.88        25.51        11.05 
TCGA-50-6594 TCGA-50-6595 TCGA-50-6597 TCGA-55-1592 TCGA-55-1594 TCGA-55-1595 
       12.16         6.21        33.37        23.05        38.73        48.62 
TCGA-55-1596 TCGA-55-5899 TCGA-55-6642 TCGA-55-6712 TCGA-64-1676 TCGA-64-1677 
       45.17         2.86        32.61         0.79        56.81        20.65 
TCGA-64-1678 TCGA-64-1680 TCGA-64-5774 TCGA-64-5775 TCGA-64-5778 TCGA-64-5779 
       39.09        37.02        83.84         0.10        30.44        16.67 
TCGA-64-5781 TCGA-64-5815 TCGA-67-3770 TCGA-67-3771 TCGA-67-3772 TCGA-67-3773 
       39.52         7.33         0.99         1.97         0.59         2.04 
TCGA-67-3774 TCGA-67-6215 TCGA-67-6216 TCGA-67-6217 TCGA-71-6725 TCGA-73-4658 
        0.59         0.89         0.69        13.87         2.01        52.57 
TCGA-73-4659 TCGA-73-4662 TCGA-73-4666 TCGA-73-4668 TCGA-73-4670 TCGA-73-4675 
       23.38        29.95        20.28        15.35         0.46         1.32 
TCGA-73-4676 TCGA-73-4677 TCGA-91-6828 TCGA-91-6829 TCGA-91-6831 TCGA-91-6835 
        4.01         1.25         1.22        41.33         1.28         1.15 
TCGA-91-6836 
        0.36 

  KRTAP4-11 MUTATED KRTAP4-11 WILD-TYPE 
               0.07                0.10 
  KRTAP4-11 MUTATED KRTAP4-11 WILD-TYPE 
              11.64               85.32 
  KRTAP4-11 MUTATED KRTAP4-11 WILD-TYPE 
              5.095              14.070 
[1] "0.1 - 11.6 (5.1)"  "0.1 - 85.3 (14.1)"
         TCGA-05-4249          TCGA-05-4250          TCGA-05-4382 
"KRTAP4-11 WILD-TYPE" "KRTAP4-11 WILD-TYPE" "KRTAP4-11 WILD-TYPE" 
         TCGA-05-4384          TCGA-05-4390          TCGA-05-4396 
"KRTAP4-11 WILD-TYPE" "KRTAP4-11 WILD-TYPE" "KRTAP4-11 WILD-TYPE" 
         TCGA-05-4397          TCGA-05-4398          TCGA-05-4402 
"KRTAP4-11 WILD-TYPE" "KRTAP4-11 WILD-TYPE" "KRTAP4-11 WILD-TYPE" 
         TCGA-05-4405          TCGA-05-4415          TCGA-05-4417 
"KRTAP4-11 WILD-TYPE" "KRTAP4-11 WILD-TYPE" "KRTAP4-11 WILD-TYPE" 
         TCGA-05-4418          TCGA-05-4420          TCGA-05-4424 
"KRTAP4-11 WILD-TYPE" "KRTAP4-11 WILD-TYPE" "KRTAP4-11 WILD-TYPE" 
         TCGA-05-4426          TCGA-05-4427          TCGA-05-4430 
"KRTAP4-11 WILD-TYPE" "KRTAP4-11 WILD-TYPE" "KRTAP4-11 WILD-TYPE" 
         TCGA-05-4432          TCGA-05-4433          TCGA-05-4434 
"KRTAP4-11 WILD-TYPE" "KRTAP4-11 WILD-TYPE" "KRTAP4-11 WILD-TYPE" 
         TCGA-05-5420          TCGA-05-5423          TCGA-05-5425 
"KRTAP4-11 WILD-TYPE" "KRTAP4-11 WILD-TYPE" "KRTAP4-11 WILD-TYPE" 
         TCGA-05-5429          TCGA-05-5715          TCGA-35-3615 
"KRTAP4-11 WILD-TYPE" "KRTAP4-11 WILD-TYPE" "KRTAP4-11 WILD-TYPE" 
         TCGA-35-4122          TCGA-35-4123          TCGA-35-5375 
"KRTAP4-11 WILD-TYPE" "KRTAP4-11 WILD-TYPE" "KRTAP4-11 WILD-TYPE" 
         TCGA-38-4625          TCGA-38-4626          TCGA-38-4627 
"KRTAP4-11 WILD-TYPE" "KRTAP4-11 WILD-TYPE" "KRTAP4-11 WILD-TYPE" 
         TCGA-38-4628          TCGA-38-4629          TCGA-38-4630 
"KRTAP4-11 WILD-TYPE" "KRTAP4-11 WILD-TYPE" "KRTAP4-11 WILD-TYPE" 
         TCGA-38-4631          TCGA-38-4632          TCGA-38-6178 
  "KRTAP4-11 MUTATED" "KRTAP4-11 WILD-TYPE" "KRTAP4-11 WILD-TYPE" 
         TCGA-44-2655          TCGA-44-2656          TCGA-44-2657 
"KRTAP4-11 WILD-TYPE" "KRTAP4-11 WILD-TYPE" "KRTAP4-11 WILD-TYPE" 
         TCGA-44-2659          TCGA-44-2661          TCGA-44-2662 
"KRTAP4-11 WILD-TYPE" "KRTAP4-11 WILD-TYPE" "KRTAP4-11 WILD-TYPE" 
         TCGA-44-2665          TCGA-44-2666          TCGA-44-2668 
"KRTAP4-11 WILD-TYPE" "KRTAP4-11 WILD-TYPE" "KRTAP4-11 WILD-TYPE" 
         TCGA-44-3396          TCGA-44-3398          TCGA-44-3918 
"KRTAP4-11 WILD-TYPE" "KRTAP4-11 WILD-TYPE" "KRTAP4-11 WILD-TYPE" 
         TCGA-44-3919          TCGA-44-4112          TCGA-44-5643 
"KRTAP4-11 WILD-TYPE" "KRTAP4-11 WILD-TYPE" "KRTAP4-11 WILD-TYPE" 
         TCGA-44-5645          TCGA-44-6144          TCGA-44-6145 
  "KRTAP4-11 MUTATED" "KRTAP4-11 WILD-TYPE"   "KRTAP4-11 MUTATED" 
         TCGA-44-6146          TCGA-44-6147          TCGA-44-6148 
"KRTAP4-11 WILD-TYPE" "KRTAP4-11 WILD-TYPE" "KRTAP4-11 WILD-TYPE" 
         TCGA-44-6774          TCGA-44-6775          TCGA-44-6776 
"KRTAP4-11 WILD-TYPE" "KRTAP4-11 WILD-TYPE" "KRTAP4-11 WILD-TYPE" 
         TCGA-44-6777          TCGA-44-6778          TCGA-44-6779 
"KRTAP4-11 WILD-TYPE" "KRTAP4-11 WILD-TYPE" "KRTAP4-11 WILD-TYPE" 
         TCGA-49-4486          TCGA-49-4487          TCGA-49-4488 
"KRTAP4-11 WILD-TYPE" "KRTAP4-11 WILD-TYPE" "KRTAP4-11 WILD-TYPE" 
         TCGA-49-4490          TCGA-49-4494          TCGA-49-4501 
"KRTAP4-11 WILD-TYPE" "KRTAP4-11 WILD-TYPE" "KRTAP4-11 WILD-TYPE" 
         TCGA-49-4505          TCGA-49-4506          TCGA-49-4507 
"KRTAP4-11 WILD-TYPE" "KRTAP4-11 WILD-TYPE" "KRTAP4-11 WILD-TYPE" 
         TCGA-49-4510          TCGA-49-4512          TCGA-49-4514 
"KRTAP4-11 WILD-TYPE" "KRTAP4-11 WILD-TYPE" "KRTAP4-11 WILD-TYPE" 
         TCGA-49-6742          TCGA-49-6743          TCGA-49-6744 
"KRTAP4-11 WILD-TYPE" "KRTAP4-11 WILD-TYPE" "KRTAP4-11 WILD-TYPE" 
         TCGA-49-6745          TCGA-50-5044          TCGA-50-5045 
"KRTAP4-11 WILD-TYPE" "KRTAP4-11 WILD-TYPE" "KRTAP4-11 WILD-TYPE" 
         TCGA-50-5049          TCGA-50-5051          TCGA-50-5055 
"KRTAP4-11 WILD-TYPE" "KRTAP4-11 WILD-TYPE" "KRTAP4-11 WILD-TYPE" 
         TCGA-50-5066          TCGA-50-5068          TCGA-50-5072 
"KRTAP4-11 WILD-TYPE" "KRTAP4-11 WILD-TYPE" "KRTAP4-11 WILD-TYPE" 
         TCGA-50-5930          TCGA-50-5931          TCGA-50-5932 
"KRTAP4-11 WILD-TYPE" "KRTAP4-11 WILD-TYPE" "KRTAP4-11 WILD-TYPE" 
         TCGA-50-5933          TCGA-50-5935          TCGA-50-5936 
"KRTAP4-11 WILD-TYPE" "KRTAP4-11 WILD-TYPE" "KRTAP4-11 WILD-TYPE" 
         TCGA-50-5939          TCGA-50-5941          TCGA-50-5942 
"KRTAP4-11 WILD-TYPE" "KRTAP4-11 WILD-TYPE" "KRTAP4-11 WILD-TYPE" 
         TCGA-50-5944          TCGA-50-5946          TCGA-50-6590 
"KRTAP4-11 WILD-TYPE" "KRTAP4-11 WILD-TYPE" "KRTAP4-11 WILD-TYPE" 
         TCGA-50-6591          TCGA-50-6592          TCGA-50-6593 
"KRTAP4-11 WILD-TYPE" "KRTAP4-11 WILD-TYPE" "KRTAP4-11 WILD-TYPE" 
         TCGA-50-6594          TCGA-50-6595          TCGA-50-6597 
"KRTAP4-11 WILD-TYPE" "KRTAP4-11 WILD-TYPE" "KRTAP4-11 WILD-TYPE" 
         TCGA-55-1592          TCGA-55-1594          TCGA-55-1595 
"KRTAP4-11 WILD-TYPE" "KRTAP4-11 WILD-TYPE" "KRTAP4-11 WILD-TYPE" 
         TCGA-55-1596          TCGA-55-5899          TCGA-55-6543 
"KRTAP4-11 WILD-TYPE" "KRTAP4-11 WILD-TYPE"   "KRTAP4-11 MUTATED" 
         TCGA-55-6642          TCGA-55-6712          TCGA-64-1676 
"KRTAP4-11 WILD-TYPE" "KRTAP4-11 WILD-TYPE" "KRTAP4-11 WILD-TYPE" 
         TCGA-64-1677          TCGA-64-1678          TCGA-64-1680 
"KRTAP4-11 WILD-TYPE" "KRTAP4-11 WILD-TYPE" "KRTAP4-11 WILD-TYPE" 
         TCGA-64-5774          TCGA-64-5775          TCGA-64-5778 
"KRTAP4-11 WILD-TYPE" "KRTAP4-11 WILD-TYPE" "KRTAP4-11 WILD-TYPE" 
         TCGA-64-5779          TCGA-64-5781          TCGA-64-5815 
"KRTAP4-11 WILD-TYPE" "KRTAP4-11 WILD-TYPE" "KRTAP4-11 WILD-TYPE" 
         TCGA-67-3770          TCGA-67-3771          TCGA-67-3772 
"KRTAP4-11 WILD-TYPE" "KRTAP4-11 WILD-TYPE" "KRTAP4-11 WILD-TYPE" 
         TCGA-67-3773          TCGA-67-3774          TCGA-67-6215 
"KRTAP4-11 WILD-TYPE" "KRTAP4-11 WILD-TYPE" "KRTAP4-11 WILD-TYPE" 
         TCGA-67-6216          TCGA-67-6217          TCGA-71-6725 
"KRTAP4-11 WILD-TYPE" "KRTAP4-11 WILD-TYPE" "KRTAP4-11 WILD-TYPE" 
         TCGA-73-4658          TCGA-73-4659          TCGA-73-4662 
"KRTAP4-11 WILD-TYPE" "KRTAP4-11 WILD-TYPE" "KRTAP4-11 WILD-TYPE" 
         TCGA-73-4666          TCGA-73-4668          TCGA-73-4670 
"KRTAP4-11 WILD-TYPE" "KRTAP4-11 WILD-TYPE" "KRTAP4-11 WILD-TYPE" 
         TCGA-73-4675          TCGA-73-4676          TCGA-73-4677 
"KRTAP4-11 WILD-TYPE" "KRTAP4-11 WILD-TYPE" "KRTAP4-11 WILD-TYPE" 
         TCGA-91-6828          TCGA-91-6829          TCGA-91-6831 
"KRTAP4-11 WILD-TYPE" "KRTAP4-11 WILD-TYPE" "KRTAP4-11 WILD-TYPE" 
         TCGA-91-6835          TCGA-91-6836 
"KRTAP4-11 WILD-TYPE" "KRTAP4-11 WILD-TYPE" 
         TCGA-05-4249          TCGA-05-4250          TCGA-05-4382 
"KRTAP4-11 WILD-TYPE" "KRTAP4-11 WILD-TYPE" "KRTAP4-11 WILD-TYPE" 
         TCGA-05-4384          TCGA-05-4390          TCGA-05-4396 
"KRTAP4-11 WILD-TYPE" "KRTAP4-11 WILD-TYPE" "KRTAP4-11 WILD-TYPE" 
         TCGA-05-4397          TCGA-05-4398          TCGA-05-4402 
"KRTAP4-11 WILD-TYPE" "KRTAP4-11 WILD-TYPE" "KRTAP4-11 WILD-TYPE" 
         TCGA-05-4405          TCGA-05-4415          TCGA-05-4417 
"KRTAP4-11 WILD-TYPE" "KRTAP4-11 WILD-TYPE" "KRTAP4-11 WILD-TYPE" 
         TCGA-05-4418          TCGA-05-4420          TCGA-05-4424 
"KRTAP4-11 WILD-TYPE" "KRTAP4-11 WILD-TYPE" "KRTAP4-11 WILD-TYPE" 
         TCGA-05-4426          TCGA-05-4427          TCGA-05-4430 
"KRTAP4-11 WILD-TYPE" "KRTAP4-11 WILD-TYPE" "KRTAP4-11 WILD-TYPE" 
         TCGA-05-4432          TCGA-05-4433          TCGA-05-4434 
"KRTAP4-11 WILD-TYPE" "KRTAP4-11 WILD-TYPE" "KRTAP4-11 WILD-TYPE" 
         TCGA-05-5420          TCGA-05-5423          TCGA-05-5425 
"KRTAP4-11 WILD-TYPE" "KRTAP4-11 WILD-TYPE" "KRTAP4-11 WILD-TYPE" 
         TCGA-05-5429          TCGA-05-5715          TCGA-35-3615 
"KRTAP4-11 WILD-TYPE" "KRTAP4-11 WILD-TYPE" "KRTAP4-11 WILD-TYPE" 
         TCGA-35-4122          TCGA-35-4123          TCGA-35-5375 
"KRTAP4-11 WILD-TYPE" "KRTAP4-11 WILD-TYPE" "KRTAP4-11 WILD-TYPE" 
         TCGA-38-4625          TCGA-38-4626          TCGA-38-4627 
"KRTAP4-11 WILD-TYPE" "KRTAP4-11 WILD-TYPE" "KRTAP4-11 WILD-TYPE" 
         TCGA-38-4628          TCGA-38-4629          TCGA-38-4630 
"KRTAP4-11 WILD-TYPE" "KRTAP4-11 WILD-TYPE" "KRTAP4-11 WILD-TYPE" 
         TCGA-38-4631          TCGA-38-4632          TCGA-38-6178 
  "KRTAP4-11 MUTATED" "KRTAP4-11 WILD-TYPE" "KRTAP4-11 WILD-TYPE" 
         TCGA-44-2655          TCGA-44-2656          TCGA-44-2657 
"KRTAP4-11 WILD-TYPE" "KRTAP4-11 WILD-TYPE" "KRTAP4-11 WILD-TYPE" 
         TCGA-44-2659          TCGA-44-2661          TCGA-44-2662 
"KRTAP4-11 WILD-TYPE" "KRTAP4-11 WILD-TYPE" "KRTAP4-11 WILD-TYPE" 
         TCGA-44-2665          TCGA-44-2666          TCGA-44-2668 
"KRTAP4-11 WILD-TYPE" "KRTAP4-11 WILD-TYPE" "KRTAP4-11 WILD-TYPE" 
         TCGA-44-3396          TCGA-44-3398          TCGA-44-3918 
"KRTAP4-11 WILD-TYPE" "KRTAP4-11 WILD-TYPE" "KRTAP4-11 WILD-TYPE" 
         TCGA-44-3919          TCGA-44-4112          TCGA-44-5643 
"KRTAP4-11 WILD-TYPE" "KRTAP4-11 WILD-TYPE" "KRTAP4-11 WILD-TYPE" 
         TCGA-44-5645          TCGA-44-6144          TCGA-44-6145 
  "KRTAP4-11 MUTATED" "KRTAP4-11 WILD-TYPE"   "KRTAP4-11 MUTATED" 
         TCGA-44-6146          TCGA-44-6147          TCGA-44-6148 
"KRTAP4-11 WILD-TYPE" "KRTAP4-11 WILD-TYPE" "KRTAP4-11 WILD-TYPE" 
         TCGA-44-6774          TCGA-44-6775          TCGA-44-6776 
"KRTAP4-11 WILD-TYPE" "KRTAP4-11 WILD-TYPE" "KRTAP4-11 WILD-TYPE" 
         TCGA-44-6777          TCGA-44-6778          TCGA-44-6779 
"KRTAP4-11 WILD-TYPE" "KRTAP4-11 WILD-TYPE" "KRTAP4-11 WILD-TYPE" 
         TCGA-49-4486          TCGA-49-4487          TCGA-49-4488 
"KRTAP4-11 WILD-TYPE" "KRTAP4-11 WILD-TYPE" "KRTAP4-11 WILD-TYPE" 
         TCGA-49-4490          TCGA-49-4494          TCGA-49-4501 
"KRTAP4-11 WILD-TYPE" "KRTAP4-11 WILD-TYPE" "KRTAP4-11 WILD-TYPE" 
         TCGA-49-4505          TCGA-49-4506          TCGA-49-4507 
"KRTAP4-11 WILD-TYPE" "KRTAP4-11 WILD-TYPE" "KRTAP4-11 WILD-TYPE" 
         TCGA-49-4510          TCGA-49-4512          TCGA-49-4514 
"KRTAP4-11 WILD-TYPE" "KRTAP4-11 WILD-TYPE" "KRTAP4-11 WILD-TYPE" 
         TCGA-49-6742          TCGA-49-6743          TCGA-49-6744 
"KRTAP4-11 WILD-TYPE" "KRTAP4-11 WILD-TYPE" "KRTAP4-11 WILD-TYPE" 
         TCGA-49-6745          TCGA-50-5044          TCGA-50-5045 
"KRTAP4-11 WILD-TYPE" "KRTAP4-11 WILD-TYPE" "KRTAP4-11 WILD-TYPE" 
         TCGA-50-5049          TCGA-50-5051          TCGA-50-5055 
"KRTAP4-11 WILD-TYPE" "KRTAP4-11 WILD-TYPE" "KRTAP4-11 WILD-TYPE" 
         TCGA-50-5066          TCGA-50-5068          TCGA-50-5072 
"KRTAP4-11 WILD-TYPE" "KRTAP4-11 WILD-TYPE" "KRTAP4-11 WILD-TYPE" 
         TCGA-50-5930          TCGA-50-5931          TCGA-50-5932 
"KRTAP4-11 WILD-TYPE" "KRTAP4-11 WILD-TYPE" "KRTAP4-11 WILD-TYPE" 
         TCGA-50-5933          TCGA-50-5935          TCGA-50-5936 
"KRTAP4-11 WILD-TYPE" "KRTAP4-11 WILD-TYPE" "KRTAP4-11 WILD-TYPE" 
         TCGA-50-5939          TCGA-50-5941          TCGA-50-5942 
"KRTAP4-11 WILD-TYPE" "KRTAP4-11 WILD-TYPE" "KRTAP4-11 WILD-TYPE" 
         TCGA-50-5944          TCGA-50-5946          TCGA-50-6590 
"KRTAP4-11 WILD-TYPE" "KRTAP4-11 WILD-TYPE" "KRTAP4-11 WILD-TYPE" 
         TCGA-50-6591          TCGA-50-6592          TCGA-50-6593 
"KRTAP4-11 WILD-TYPE" "KRTAP4-11 WILD-TYPE" "KRTAP4-11 WILD-TYPE" 
         TCGA-50-6594          TCGA-50-6595          TCGA-50-6597 
"KRTAP4-11 WILD-TYPE" "KRTAP4-11 WILD-TYPE" "KRTAP4-11 WILD-TYPE" 
         TCGA-55-1592          TCGA-55-1594          TCGA-55-1595 
"KRTAP4-11 WILD-TYPE" "KRTAP4-11 WILD-TYPE" "KRTAP4-11 WILD-TYPE" 
         TCGA-55-1596          TCGA-55-5899          TCGA-55-6543 
"KRTAP4-11 WILD-TYPE" "KRTAP4-11 WILD-TYPE"   "KRTAP4-11 MUTATED" 
         TCGA-55-6642          TCGA-55-6712          TCGA-64-1676 
"KRTAP4-11 WILD-TYPE" "KRTAP4-11 WILD-TYPE" "KRTAP4-11 WILD-TYPE" 
         TCGA-64-1677          TCGA-64-1678          TCGA-64-1680 
"KRTAP4-11 WILD-TYPE" "KRTAP4-11 WILD-TYPE" "KRTAP4-11 WILD-TYPE" 
         TCGA-64-5774          TCGA-64-5775          TCGA-64-5778 
"KRTAP4-11 WILD-TYPE" "KRTAP4-11 WILD-TYPE" "KRTAP4-11 WILD-TYPE" 
         TCGA-64-5779          TCGA-64-5781          TCGA-64-5815 
"KRTAP4-11 WILD-TYPE" "KRTAP4-11 WILD-TYPE" "KRTAP4-11 WILD-TYPE" 
         TCGA-67-3770          TCGA-67-3771          TCGA-67-3772 
"KRTAP4-11 WILD-TYPE" "KRTAP4-11 WILD-TYPE" "KRTAP4-11 WILD-TYPE" 
         TCGA-67-3773          TCGA-67-3774          TCGA-67-6215 
"KRTAP4-11 WILD-TYPE" "KRTAP4-11 WILD-TYPE" "KRTAP4-11 WILD-TYPE" 
         TCGA-67-6216          TCGA-67-6217          TCGA-71-6725 
"KRTAP4-11 WILD-TYPE" "KRTAP4-11 WILD-TYPE" "KRTAP4-11 WILD-TYPE" 
         TCGA-73-4658          TCGA-73-4659          TCGA-73-4662 
"KRTAP4-11 WILD-TYPE" "KRTAP4-11 WILD-TYPE" "KRTAP4-11 WILD-TYPE" 
         TCGA-73-4666          TCGA-73-4668          TCGA-73-4670 
"KRTAP4-11 WILD-TYPE" "KRTAP4-11 WILD-TYPE" "KRTAP4-11 WILD-TYPE" 
         TCGA-73-4675          TCGA-73-4676          TCGA-73-4677 
"KRTAP4-11 WILD-TYPE" "KRTAP4-11 WILD-TYPE" "KRTAP4-11 WILD-TYPE" 
         TCGA-91-6828          TCGA-91-6829          TCGA-91-6831 
"KRTAP4-11 WILD-TYPE" "KRTAP4-11 WILD-TYPE" "KRTAP4-11 WILD-TYPE" 
         TCGA-91-6835          TCGA-91-6836 
"KRTAP4-11 WILD-TYPE" "KRTAP4-11 WILD-TYPE" 
         TCGA-05-4249          TCGA-05-4250          TCGA-05-4382 
"KRTAP4-11 WILD-TYPE" "KRTAP4-11 WILD-TYPE" "KRTAP4-11 WILD-TYPE" 
         TCGA-05-4384          TCGA-05-4390          TCGA-05-4396 
"KRTAP4-11 WILD-TYPE" "KRTAP4-11 WILD-TYPE" "KRTAP4-11 WILD-TYPE" 
         TCGA-05-4397          TCGA-05-4398          TCGA-05-4402 
"KRTAP4-11 WILD-TYPE" "KRTAP4-11 WILD-TYPE" "KRTAP4-11 WILD-TYPE" 
         TCGA-05-4405          TCGA-05-4415          TCGA-05-4417 
"KRTAP4-11 WILD-TYPE" "KRTAP4-11 WILD-TYPE" "KRTAP4-11 WILD-TYPE" 
         TCGA-05-4418          TCGA-05-4420          TCGA-05-4424 
"KRTAP4-11 WILD-TYPE" "KRTAP4-11 WILD-TYPE" "KRTAP4-11 WILD-TYPE" 
         TCGA-05-4426          TCGA-05-4427          TCGA-05-4430 
"KRTAP4-11 WILD-TYPE" "KRTAP4-11 WILD-TYPE" "KRTAP4-11 WILD-TYPE" 
         TCGA-05-4432          TCGA-05-4433          TCGA-05-4434 
"KRTAP4-11 WILD-TYPE" "KRTAP4-11 WILD-TYPE" "KRTAP4-11 WILD-TYPE" 
         TCGA-05-5420          TCGA-05-5423          TCGA-05-5425 
"KRTAP4-11 WILD-TYPE" "KRTAP4-11 WILD-TYPE" "KRTAP4-11 WILD-TYPE" 
         TCGA-05-5429          TCGA-05-5715          TCGA-35-3615 
"KRTAP4-11 WILD-TYPE" "KRTAP4-11 WILD-TYPE" "KRTAP4-11 WILD-TYPE" 
         TCGA-35-4122          TCGA-35-4123          TCGA-35-5375 
"KRTAP4-11 WILD-TYPE" "KRTAP4-11 WILD-TYPE" "KRTAP4-11 WILD-TYPE" 
         TCGA-38-4625          TCGA-38-4626          TCGA-38-4627 
"KRTAP4-11 WILD-TYPE" "KRTAP4-11 WILD-TYPE" "KRTAP4-11 WILD-TYPE" 
         TCGA-38-4628          TCGA-38-4629          TCGA-38-4630 
"KRTAP4-11 WILD-TYPE" "KRTAP4-11 WILD-TYPE" "KRTAP4-11 WILD-TYPE" 
         TCGA-38-4631          TCGA-38-4632          TCGA-38-6178 
  "KRTAP4-11 MUTATED" "KRTAP4-11 WILD-TYPE" "KRTAP4-11 WILD-TYPE" 
         TCGA-44-2655          TCGA-44-2656          TCGA-44-2657 
"KRTAP4-11 WILD-TYPE" "KRTAP4-11 WILD-TYPE" "KRTAP4-11 WILD-TYPE" 
         TCGA-44-2659          TCGA-44-2661          TCGA-44-2662 
"KRTAP4-11 WILD-TYPE" "KRTAP4-11 WILD-TYPE" "KRTAP4-11 WILD-TYPE" 
         TCGA-44-2665          TCGA-44-2666          TCGA-44-2668 
"KRTAP4-11 WILD-TYPE" "KRTAP4-11 WILD-TYPE" "KRTAP4-11 WILD-TYPE" 
         TCGA-44-3396          TCGA-44-3398          TCGA-44-3918 
"KRTAP4-11 WILD-TYPE" "KRTAP4-11 WILD-TYPE" "KRTAP4-11 WILD-TYPE" 
         TCGA-44-3919          TCGA-44-4112          TCGA-44-5643 
"KRTAP4-11 WILD-TYPE" "KRTAP4-11 WILD-TYPE" "KRTAP4-11 WILD-TYPE" 
         TCGA-44-5645          TCGA-44-6144          TCGA-44-6145 
  "KRTAP4-11 MUTATED" "KRTAP4-11 WILD-TYPE"   "KRTAP4-11 MUTATED" 
         TCGA-44-6146          TCGA-44-6147          TCGA-44-6148 
"KRTAP4-11 WILD-TYPE" "KRTAP4-11 WILD-TYPE" "KRTAP4-11 WILD-TYPE" 
         TCGA-44-6774          TCGA-44-6775          TCGA-44-6776 
"KRTAP4-11 WILD-TYPE" "KRTAP4-11 WILD-TYPE" "KRTAP4-11 WILD-TYPE" 
         TCGA-44-6777          TCGA-44-6778          TCGA-44-6779 
"KRTAP4-11 WILD-TYPE" "KRTAP4-11 WILD-TYPE" "KRTAP4-11 WILD-TYPE" 
         TCGA-49-4486          TCGA-49-4487          TCGA-49-4488 
"KRTAP4-11 WILD-TYPE" "KRTAP4-11 WILD-TYPE" "KRTAP4-11 WILD-TYPE" 
         TCGA-49-4490          TCGA-49-4494          TCGA-49-4501 
"KRTAP4-11 WILD-TYPE" "KRTAP4-11 WILD-TYPE" "KRTAP4-11 WILD-TYPE" 
         TCGA-49-4505          TCGA-49-4506          TCGA-49-4507 
"KRTAP4-11 WILD-TYPE" "KRTAP4-11 WILD-TYPE" "KRTAP4-11 WILD-TYPE" 
         TCGA-49-4510          TCGA-49-4512          TCGA-49-4514 
"KRTAP4-11 WILD-TYPE" "KRTAP4-11 WILD-TYPE" "KRTAP4-11 WILD-TYPE" 
         TCGA-49-6742          TCGA-49-6743          TCGA-49-6744 
"KRTAP4-11 WILD-TYPE" "KRTAP4-11 WILD-TYPE" "KRTAP4-11 WILD-TYPE" 
         TCGA-49-6745          TCGA-50-5044          TCGA-50-5045 
"KRTAP4-11 WILD-TYPE" "KRTAP4-11 WILD-TYPE" "KRTAP4-11 WILD-TYPE" 
         TCGA-50-5049          TCGA-50-5051          TCGA-50-5055 
"KRTAP4-11 WILD-TYPE" "KRTAP4-11 WILD-TYPE" "KRTAP4-11 WILD-TYPE" 
         TCGA-50-5066          TCGA-50-5068          TCGA-50-5072 
"KRTAP4-11 WILD-TYPE" "KRTAP4-11 WILD-TYPE" "KRTAP4-11 WILD-TYPE" 
         TCGA-50-5930          TCGA-50-5931          TCGA-50-5932 
"KRTAP4-11 WILD-TYPE" "KRTAP4-11 WILD-TYPE" "KRTAP4-11 WILD-TYPE" 
         TCGA-50-5933          TCGA-50-5935          TCGA-50-5936 
"KRTAP4-11 WILD-TYPE" "KRTAP4-11 WILD-TYPE" "KRTAP4-11 WILD-TYPE" 
         TCGA-50-5939          TCGA-50-5941          TCGA-50-5942 
"KRTAP4-11 WILD-TYPE" "KRTAP4-11 WILD-TYPE" "KRTAP4-11 WILD-TYPE" 
         TCGA-50-5944          TCGA-50-5946          TCGA-50-6590 
"KRTAP4-11 WILD-TYPE" "KRTAP4-11 WILD-TYPE" "KRTAP4-11 WILD-TYPE" 
         TCGA-50-6591          TCGA-50-6592          TCGA-50-6593 
"KRTAP4-11 WILD-TYPE" "KRTAP4-11 WILD-TYPE" "KRTAP4-11 WILD-TYPE" 
         TCGA-50-6594          TCGA-50-6595          TCGA-50-6597 
"KRTAP4-11 WILD-TYPE" "KRTAP4-11 WILD-TYPE" "KRTAP4-11 WILD-TYPE" 
         TCGA-55-1592          TCGA-55-1594          TCGA-55-1595 
"KRTAP4-11 WILD-TYPE" "KRTAP4-11 WILD-TYPE" "KRTAP4-11 WILD-TYPE" 
         TCGA-55-1596          TCGA-55-5899          TCGA-55-6543 
"KRTAP4-11 WILD-TYPE" "KRTAP4-11 WILD-TYPE"   "KRTAP4-11 MUTATED" 
         TCGA-55-6642          TCGA-55-6712          TCGA-64-1676 
"KRTAP4-11 WILD-TYPE" "KRTAP4-11 WILD-TYPE" "KRTAP4-11 WILD-TYPE" 
         TCGA-64-1677          TCGA-64-1678          TCGA-64-1680 
"KRTAP4-11 WILD-TYPE" "KRTAP4-11 WILD-TYPE" "KRTAP4-11 WILD-TYPE" 
         TCGA-64-5774          TCGA-64-5775          TCGA-64-5778 
"KRTAP4-11 WILD-TYPE" "KRTAP4-11 WILD-TYPE" "KRTAP4-11 WILD-TYPE" 
         TCGA-64-5779          TCGA-64-5781          TCGA-64-5815 
"KRTAP4-11 WILD-TYPE" "KRTAP4-11 WILD-TYPE" "KRTAP4-11 WILD-TYPE" 
         TCGA-67-3770          TCGA-67-3771          TCGA-67-3772 
"KRTAP4-11 WILD-TYPE" "KRTAP4-11 WILD-TYPE" "KRTAP4-11 WILD-TYPE" 
         TCGA-67-3773          TCGA-67-3774          TCGA-67-6215 
"KRTAP4-11 WILD-TYPE" "KRTAP4-11 WILD-TYPE" "KRTAP4-11 WILD-TYPE" 
         TCGA-67-6216          TCGA-67-6217          TCGA-71-6725 
"KRTAP4-11 WILD-TYPE" "KRTAP4-11 WILD-TYPE" "KRTAP4-11 WILD-TYPE" 
         TCGA-73-4658          TCGA-73-4659          TCGA-73-4662 
"KRTAP4-11 WILD-TYPE" "KRTAP4-11 WILD-TYPE" "KRTAP4-11 WILD-TYPE" 
         TCGA-73-4666          TCGA-73-4668          TCGA-73-4670 
"KRTAP4-11 WILD-TYPE" "KRTAP4-11 WILD-TYPE" "KRTAP4-11 WILD-TYPE" 
         TCGA-73-4675          TCGA-73-4676          TCGA-73-4677 
"KRTAP4-11 WILD-TYPE" "KRTAP4-11 WILD-TYPE" "KRTAP4-11 WILD-TYPE" 
         TCGA-91-6828          TCGA-91-6829          TCGA-91-6831 
"KRTAP4-11 WILD-TYPE" "KRTAP4-11 WILD-TYPE" "KRTAP4-11 WILD-TYPE" 
         TCGA-91-6835          TCGA-91-6836 
"KRTAP4-11 WILD-TYPE" "KRTAP4-11 WILD-TYPE" 
[1] "hr=" "4.3"
D269V2, continuous
D269V3, binary
[1] "tbl2"
                     cls
clus                  [,1] [,2]
  KRTAP4-11 MUTATED      4    1
  KRTAP4-11 WILD-TYPE   89   78
        clus
vv       KRTAP4-11 MUTATED KRTAP4-11 WILD-TYPE
  FEMALE                 4                  89
  MALE                   1                  78
D269V4, continuous
D269V5, multiclass
D269V6, multiclass
    clus
vv   KRTAP4-11 MUTATED KRTAP4-11 WILD-TYPE
  T1                 2                  39
  T2                 2                 106
  T3                 0                  14
  T4                 0                   8
D269V7, multiclass
       clus
vv      KRTAP4-11 MUTATED KRTAP4-11 WILD-TYPE
  N0                    4                  91
  N1                    0                  37
  N2+N3                 0                  35
D269V8, multiclass
    clus
vv   KRTAP4-11 MUTATED KRTAP4-11 WILD-TYPE
  M0                 3                 134
  M1                 0                   9
  MX                 0                  22
D269V9, multiclass
     clus
vv    KRTAP4-11 MUTATED KRTAP4-11 WILD-TYPE
  I                   4                  84
  II                  0                  33
  III                 0                  39
  IV                  0                   9
D269V10, binary
[1] "tbl2"
                     cls
clus                  [,1] [,2]
  KRTAP4-11 MUTATED      0    5
  KRTAP4-11 WILD-TYPE   16  151
     clus
vv    KRTAP4-11 MUTATED KRTAP4-11 WILD-TYPE
  NO                  0                  16
  YES                 5                 151
D269V11, continuous
D269V12, continuous
D269V13, multiclass
                                             clus
vv                                            KRTAP4-11 MUTATED
  CURRENT REFORMED SMOKER FOR < OR = 15 YEARS                 3
  CURRENT REFORMED SMOKER FOR > 15 YEARS                      2
  CURRENT SMOKER                                              0
  LIFELONG NON-SMOKER                                         0
                                             clus
vv                                            KRTAP4-11 WILD-TYPE
  CURRENT REFORMED SMOKER FOR < OR = 15 YEARS                  59
  CURRENT REFORMED SMOKER FOR > 15 YEARS                       44
  CURRENT SMOKER                                               28
  LIFELONG NON-SMOKER                                          24
D269V14, continuous
[1] "Remove cluster labels:" "KRTAP4-11 MUTATED"     
clus
  KRTAP4-11 MUTATED KRTAP4-11 WILD-TYPE 
                  2                  66 
         TCGA-05-4384          TCGA-05-4390          TCGA-05-4396 
"KRTAP4-11 WILD-TYPE" "KRTAP4-11 WILD-TYPE" "KRTAP4-11 WILD-TYPE" 
         TCGA-05-4405          TCGA-05-4410          TCGA-05-4415 
"KRTAP4-11 WILD-TYPE" "KRTAP4-11 WILD-TYPE" "KRTAP4-11 WILD-TYPE" 
         TCGA-05-4417          TCGA-05-4424          TCGA-05-4427 
"KRTAP4-11 WILD-TYPE" "KRTAP4-11 WILD-TYPE" "KRTAP4-11 WILD-TYPE" 
         TCGA-05-4433          TCGA-05-5420          TCGA-05-5423 
"KRTAP4-11 WILD-TYPE" "KRTAP4-11 WILD-TYPE" "KRTAP4-11 WILD-TYPE" 
         TCGA-05-5425          TCGA-05-5428          TCGA-35-4122 
"KRTAP4-11 WILD-TYPE" "KRTAP4-11 WILD-TYPE" "KRTAP4-11 WILD-TYPE" 
         TCGA-35-4123          TCGA-35-5375          TCGA-38-4625 
"KRTAP4-11 WILD-TYPE" "KRTAP4-11 WILD-TYPE" "KRTAP4-11 WILD-TYPE" 
         TCGA-38-4626          TCGA-44-2655          TCGA-44-2656 
"KRTAP4-11 WILD-TYPE" "KRTAP4-11 WILD-TYPE" "KRTAP4-11 WILD-TYPE" 
         TCGA-44-2657          TCGA-44-2659          TCGA-44-2662 
"KRTAP4-11 WILD-TYPE" "KRTAP4-11 WILD-TYPE" "KRTAP4-11 WILD-TYPE" 
         TCGA-44-2666          TCGA-44-2668          TCGA-44-3396 
"KRTAP4-11 WILD-TYPE" "KRTAP4-11 WILD-TYPE" "KRTAP4-11 WILD-TYPE" 
         TCGA-44-3398          TCGA-44-3918          TCGA-44-4112 
"KRTAP4-11 WILD-TYPE" "KRTAP4-11 WILD-TYPE" "KRTAP4-11 WILD-TYPE" 
         TCGA-44-6144          TCGA-44-6147          TCGA-44-6148 
"KRTAP4-11 WILD-TYPE" "KRTAP4-11 WILD-TYPE" "KRTAP4-11 WILD-TYPE" 
         TCGA-44-6774          TCGA-44-6775          TCGA-44-6776 
"KRTAP4-11 WILD-TYPE" "KRTAP4-11 WILD-TYPE" "KRTAP4-11 WILD-TYPE" 
         TCGA-44-6777          TCGA-44-6778          TCGA-44-6779 
"KRTAP4-11 WILD-TYPE" "KRTAP4-11 WILD-TYPE" "KRTAP4-11 WILD-TYPE" 
         TCGA-49-4486          TCGA-49-4494          TCGA-49-4505 
"KRTAP4-11 WILD-TYPE" "KRTAP4-11 WILD-TYPE" "KRTAP4-11 WILD-TYPE" 
         TCGA-55-1592          TCGA-55-1594          TCGA-55-1595 
"KRTAP4-11 WILD-TYPE" "KRTAP4-11 WILD-TYPE" "KRTAP4-11 WILD-TYPE" 
         TCGA-55-1596          TCGA-55-5899          TCGA-55-6642 
"KRTAP4-11 WILD-TYPE" "KRTAP4-11 WILD-TYPE" "KRTAP4-11 WILD-TYPE" 
         TCGA-55-6712          TCGA-64-1677          TCGA-64-1678 
"KRTAP4-11 WILD-TYPE" "KRTAP4-11 WILD-TYPE" "KRTAP4-11 WILD-TYPE" 
         TCGA-64-1680          TCGA-64-5774          TCGA-64-5775 
"KRTAP4-11 WILD-TYPE" "KRTAP4-11 WILD-TYPE" "KRTAP4-11 WILD-TYPE" 
         TCGA-64-5778          TCGA-64-5779          TCGA-64-5781 
"KRTAP4-11 WILD-TYPE" "KRTAP4-11 WILD-TYPE" "KRTAP4-11 WILD-TYPE" 
         TCGA-73-4659          TCGA-73-4662          TCGA-73-4666 
"KRTAP4-11 WILD-TYPE" "KRTAP4-11 WILD-TYPE" "KRTAP4-11 WILD-TYPE" 
         TCGA-73-4668          TCGA-73-4670          TCGA-73-4675 
"KRTAP4-11 WILD-TYPE" "KRTAP4-11 WILD-TYPE" "KRTAP4-11 WILD-TYPE" 
         TCGA-73-4676          TCGA-91-6829          TCGA-91-6836 
"KRTAP4-11 WILD-TYPE" "KRTAP4-11 WILD-TYPE" "KRTAP4-11 WILD-TYPE" 

Clustering(270) Variable = SLITRK6 MUTATION ANALYSIS
D270V1, survival
                   sevent
clus2                0  1
  SLITRK6 MUTATED    8  1
  SLITRK6 WILD-TYPE 91 49
  SLITRK6 MUTATED SLITRK6 WILD-TYPE 
                9               140 
  SLITRK6 MUTATED SLITRK6 WILD-TYPE 
                1                49 
$`SLITRK6 MUTATED`
TCGA-05-4396 TCGA-05-4424 TCGA-05-4427 TCGA-38-4625 TCGA-44-2655 TCGA-44-2656 
        9.96        30.02        26.01        47.61        18.87        19.10 
TCGA-50-5941 TCGA-55-5899 TCGA-67-6217 
        9.37         2.86        13.87 

$`SLITRK6 WILD-TYPE`
TCGA-05-4249 TCGA-05-4250 TCGA-05-4382 TCGA-05-4384 TCGA-05-4390 TCGA-05-4397 
       38.07         3.98        19.92        14.01        37.02        24.03 
TCGA-05-4398 TCGA-05-4402 TCGA-05-4405 TCGA-05-4415 TCGA-05-4417 TCGA-05-4418 
       47.05         8.02        20.05         2.96        14.93         8.98 
TCGA-05-4420 TCGA-05-4426 TCGA-05-4430 TCGA-05-4432 TCGA-05-4433 TCGA-05-4434 
       29.95        26.01        25.02        25.02        24.00        15.02 
TCGA-05-5420 TCGA-05-5423 TCGA-05-5425 TCGA-05-5429 TCGA-05-5715 TCGA-35-3615 
        1.02         4.96         2.96         0.99         2.04         0.46 
TCGA-35-4122 TCGA-35-4123 TCGA-35-5375 TCGA-38-4626 TCGA-38-4627 TCGA-38-4628 
        7.36         5.95         8.68        85.32        37.71        49.02 
TCGA-38-4629 TCGA-38-4630 TCGA-38-4631 TCGA-38-4632 TCGA-38-6178 TCGA-44-2657 
       28.37        35.28        11.64        44.61         5.19        13.15 
TCGA-44-2659 TCGA-44-2661 TCGA-44-2662 TCGA-44-2665 TCGA-44-2666 TCGA-44-2668 
       17.39         3.39        15.78        13.15         3.19         8.09 
TCGA-44-3396 TCGA-44-3398 TCGA-44-3918 TCGA-44-3919 TCGA-44-4112 TCGA-44-5643 
       10.22         8.32         6.44         6.21         4.60         3.48 
TCGA-44-5645 TCGA-44-6144 TCGA-44-6145 TCGA-44-6146 TCGA-44-6147 TCGA-44-6148 
        6.84         0.30         3.35         9.93         7.76         3.12 
TCGA-44-6774 TCGA-44-6775 TCGA-44-6776 TCGA-44-6777 TCGA-44-6778 TCGA-44-6779 
        5.42         2.70        63.72        32.45        36.49        16.41 
TCGA-49-4486 TCGA-49-4487 TCGA-49-4488 TCGA-49-4490 TCGA-49-4494 TCGA-49-4501 
       76.21        28.11        28.57        12.66        35.54        46.72 
TCGA-49-4505 TCGA-49-4506 TCGA-49-4507 TCGA-49-4510 TCGA-49-4512 TCGA-49-4514 
       14.07        32.84         8.81        29.46        29.75        43.20 
TCGA-49-6742 TCGA-49-6743 TCGA-49-6744 TCGA-49-6745 TCGA-50-5044 TCGA-50-5045 
       15.02        12.13        12.99         4.93        20.48        71.47 
TCGA-50-5049 TCGA-50-5051 TCGA-50-5055 TCGA-50-5066 TCGA-50-5068 TCGA-50-5072 
       48.82        14.96        25.81         9.76        49.28         8.05 
TCGA-50-5930 TCGA-50-5931 TCGA-50-5932 TCGA-50-5933 TCGA-50-5935 TCGA-50-5936 
        9.27         8.78        35.87        77.88        21.47         8.45 
TCGA-50-5939 TCGA-50-5942 TCGA-50-5944 TCGA-50-5946 TCGA-50-6590 TCGA-50-6591 
       15.12         4.44        12.26        11.47        42.31         3.88 
TCGA-50-6592 TCGA-50-6593 TCGA-50-6594 TCGA-50-6595 TCGA-50-6597 TCGA-55-1592 
       25.51        11.05        12.16         6.21        33.37        23.05 
TCGA-55-1594 TCGA-55-1595 TCGA-55-1596 TCGA-55-6543 TCGA-55-6642 TCGA-55-6712 
       38.73        48.62        45.17         0.07        32.61         0.79 
TCGA-64-1676 TCGA-64-1677 TCGA-64-1678 TCGA-64-1680 TCGA-64-5774 TCGA-64-5775 
       56.81        20.65        39.09        37.02        83.84         0.10 
TCGA-64-5778 TCGA-64-5779 TCGA-64-5781 TCGA-64-5815 TCGA-67-3770 TCGA-67-3771 
       30.44        16.67        39.52         7.33         0.99         1.97 
TCGA-67-3772 TCGA-67-3773 TCGA-67-3774 TCGA-67-6215 TCGA-67-6216 TCGA-71-6725 
        0.59         2.04         0.59         0.89         0.69         2.01 
TCGA-73-4658 TCGA-73-4659 TCGA-73-4662 TCGA-73-4666 TCGA-73-4668 TCGA-73-4670 
       52.57        23.38        29.95        20.28        15.35         0.46 
TCGA-73-4675 TCGA-73-4676 TCGA-73-4677 TCGA-91-6828 TCGA-91-6829 TCGA-91-6831 
        1.32         4.01         1.25         1.22        41.33         1.28 
TCGA-91-6835 TCGA-91-6836 
        1.15         0.36 

  SLITRK6 MUTATED SLITRK6 WILD-TYPE 
             2.86              0.07 
  SLITRK6 MUTATED SLITRK6 WILD-TYPE 
            47.61             85.32 
  SLITRK6 MUTATED SLITRK6 WILD-TYPE 
            18.87             13.15 
[1] "2.9 - 47.6 (18.9)" "0.1 - 85.3 (13.2)"
       TCGA-05-4249        TCGA-05-4250        TCGA-05-4382        TCGA-05-4384 
"SLITRK6 WILD-TYPE" "SLITRK6 WILD-TYPE" "SLITRK6 WILD-TYPE" "SLITRK6 WILD-TYPE" 
       TCGA-05-4390        TCGA-05-4396        TCGA-05-4397        TCGA-05-4398 
"SLITRK6 WILD-TYPE"   "SLITRK6 MUTATED" "SLITRK6 WILD-TYPE" "SLITRK6 WILD-TYPE" 
       TCGA-05-4402        TCGA-05-4405        TCGA-05-4415        TCGA-05-4417 
"SLITRK6 WILD-TYPE" "SLITRK6 WILD-TYPE" "SLITRK6 WILD-TYPE" "SLITRK6 WILD-TYPE" 
       TCGA-05-4418        TCGA-05-4420        TCGA-05-4424        TCGA-05-4426 
"SLITRK6 WILD-TYPE" "SLITRK6 WILD-TYPE"   "SLITRK6 MUTATED" "SLITRK6 WILD-TYPE" 
       TCGA-05-4427        TCGA-05-4430        TCGA-05-4432        TCGA-05-4433 
  "SLITRK6 MUTATED" "SLITRK6 WILD-TYPE" "SLITRK6 WILD-TYPE" "SLITRK6 WILD-TYPE" 
       TCGA-05-4434        TCGA-05-5420        TCGA-05-5423        TCGA-05-5425 
"SLITRK6 WILD-TYPE" "SLITRK6 WILD-TYPE" "SLITRK6 WILD-TYPE" "SLITRK6 WILD-TYPE" 
       TCGA-05-5429        TCGA-05-5715        TCGA-35-3615        TCGA-35-4122 
"SLITRK6 WILD-TYPE" "SLITRK6 WILD-TYPE" "SLITRK6 WILD-TYPE" "SLITRK6 WILD-TYPE" 
       TCGA-35-4123        TCGA-35-5375        TCGA-38-4625        TCGA-38-4626 
"SLITRK6 WILD-TYPE" "SLITRK6 WILD-TYPE"   "SLITRK6 MUTATED" "SLITRK6 WILD-TYPE" 
       TCGA-38-4627        TCGA-38-4628        TCGA-38-4629        TCGA-38-4630 
"SLITRK6 WILD-TYPE" "SLITRK6 WILD-TYPE" "SLITRK6 WILD-TYPE" "SLITRK6 WILD-TYPE" 
       TCGA-38-4631        TCGA-38-4632        TCGA-38-6178        TCGA-44-2655 
"SLITRK6 WILD-TYPE" "SLITRK6 WILD-TYPE" "SLITRK6 WILD-TYPE"   "SLITRK6 MUTATED" 
       TCGA-44-2656        TCGA-44-2657        TCGA-44-2659        TCGA-44-2661 
  "SLITRK6 MUTATED" "SLITRK6 WILD-TYPE" "SLITRK6 WILD-TYPE" "SLITRK6 WILD-TYPE" 
       TCGA-44-2662        TCGA-44-2665        TCGA-44-2666        TCGA-44-2668 
"SLITRK6 WILD-TYPE" "SLITRK6 WILD-TYPE" "SLITRK6 WILD-TYPE" "SLITRK6 WILD-TYPE" 
       TCGA-44-3396        TCGA-44-3398        TCGA-44-3918        TCGA-44-3919 
"SLITRK6 WILD-TYPE" "SLITRK6 WILD-TYPE" "SLITRK6 WILD-TYPE" "SLITRK6 WILD-TYPE" 
       TCGA-44-4112        TCGA-44-5643        TCGA-44-5645        TCGA-44-6144 
"SLITRK6 WILD-TYPE" "SLITRK6 WILD-TYPE" "SLITRK6 WILD-TYPE" "SLITRK6 WILD-TYPE" 
       TCGA-44-6145        TCGA-44-6146        TCGA-44-6147        TCGA-44-6148 
"SLITRK6 WILD-TYPE" "SLITRK6 WILD-TYPE" "SLITRK6 WILD-TYPE" "SLITRK6 WILD-TYPE" 
       TCGA-44-6774        TCGA-44-6775        TCGA-44-6776        TCGA-44-6777 
"SLITRK6 WILD-TYPE" "SLITRK6 WILD-TYPE" "SLITRK6 WILD-TYPE" "SLITRK6 WILD-TYPE" 
       TCGA-44-6778        TCGA-44-6779        TCGA-49-4486        TCGA-49-4487 
"SLITRK6 WILD-TYPE" "SLITRK6 WILD-TYPE" "SLITRK6 WILD-TYPE" "SLITRK6 WILD-TYPE" 
       TCGA-49-4488        TCGA-49-4490        TCGA-49-4494        TCGA-49-4501 
"SLITRK6 WILD-TYPE" "SLITRK6 WILD-TYPE" "SLITRK6 WILD-TYPE" "SLITRK6 WILD-TYPE" 
       TCGA-49-4505        TCGA-49-4506        TCGA-49-4507        TCGA-49-4510 
"SLITRK6 WILD-TYPE" "SLITRK6 WILD-TYPE" "SLITRK6 WILD-TYPE" "SLITRK6 WILD-TYPE" 
       TCGA-49-4512        TCGA-49-4514        TCGA-49-6742        TCGA-49-6743 
"SLITRK6 WILD-TYPE" "SLITRK6 WILD-TYPE" "SLITRK6 WILD-TYPE" "SLITRK6 WILD-TYPE" 
       TCGA-49-6744        TCGA-49-6745        TCGA-50-5044        TCGA-50-5045 
"SLITRK6 WILD-TYPE" "SLITRK6 WILD-TYPE" "SLITRK6 WILD-TYPE" "SLITRK6 WILD-TYPE" 
       TCGA-50-5049        TCGA-50-5051        TCGA-50-5055        TCGA-50-5066 
"SLITRK6 WILD-TYPE" "SLITRK6 WILD-TYPE" "SLITRK6 WILD-TYPE" "SLITRK6 WILD-TYPE" 
       TCGA-50-5068        TCGA-50-5072        TCGA-50-5930        TCGA-50-5931 
"SLITRK6 WILD-TYPE" "SLITRK6 WILD-TYPE" "SLITRK6 WILD-TYPE" "SLITRK6 WILD-TYPE" 
       TCGA-50-5932        TCGA-50-5933        TCGA-50-5935        TCGA-50-5936 
"SLITRK6 WILD-TYPE" "SLITRK6 WILD-TYPE" "SLITRK6 WILD-TYPE" "SLITRK6 WILD-TYPE" 
       TCGA-50-5939        TCGA-50-5941        TCGA-50-5942        TCGA-50-5944 
"SLITRK6 WILD-TYPE"   "SLITRK6 MUTATED" "SLITRK6 WILD-TYPE" "SLITRK6 WILD-TYPE" 
       TCGA-50-5946        TCGA-50-6590        TCGA-50-6591        TCGA-50-6592 
"SLITRK6 WILD-TYPE" "SLITRK6 WILD-TYPE" "SLITRK6 WILD-TYPE" "SLITRK6 WILD-TYPE" 
       TCGA-50-6593        TCGA-50-6594        TCGA-50-6595        TCGA-50-6597 
"SLITRK6 WILD-TYPE" "SLITRK6 WILD-TYPE" "SLITRK6 WILD-TYPE" "SLITRK6 WILD-TYPE" 
       TCGA-55-1592        TCGA-55-1594        TCGA-55-1595        TCGA-55-1596 
"SLITRK6 WILD-TYPE" "SLITRK6 WILD-TYPE" "SLITRK6 WILD-TYPE" "SLITRK6 WILD-TYPE" 
       TCGA-55-5899        TCGA-55-6543        TCGA-55-6642        TCGA-55-6712 
  "SLITRK6 MUTATED" "SLITRK6 WILD-TYPE" "SLITRK6 WILD-TYPE" "SLITRK6 WILD-TYPE" 
       TCGA-64-1676        TCGA-64-1677        TCGA-64-1678        TCGA-64-1680 
"SLITRK6 WILD-TYPE" "SLITRK6 WILD-TYPE" "SLITRK6 WILD-TYPE" "SLITRK6 WILD-TYPE" 
       TCGA-64-5774        TCGA-64-5775        TCGA-64-5778        TCGA-64-5779 
"SLITRK6 WILD-TYPE" "SLITRK6 WILD-TYPE" "SLITRK6 WILD-TYPE" "SLITRK6 WILD-TYPE" 
       TCGA-64-5781        TCGA-64-5815        TCGA-67-3770        TCGA-67-3771 
"SLITRK6 WILD-TYPE" "SLITRK6 WILD-TYPE" "SLITRK6 WILD-TYPE" "SLITRK6 WILD-TYPE" 
       TCGA-67-3772        TCGA-67-3773        TCGA-67-3774        TCGA-67-6215 
"SLITRK6 WILD-TYPE" "SLITRK6 WILD-TYPE" "SLITRK6 WILD-TYPE" "SLITRK6 WILD-TYPE" 
       TCGA-67-6216        TCGA-67-6217        TCGA-71-6725        TCGA-73-4658 
"SLITRK6 WILD-TYPE"   "SLITRK6 MUTATED" "SLITRK6 WILD-TYPE" "SLITRK6 WILD-TYPE" 
       TCGA-73-4659        TCGA-73-4662        TCGA-73-4666        TCGA-73-4668 
"SLITRK6 WILD-TYPE" "SLITRK6 WILD-TYPE" "SLITRK6 WILD-TYPE" "SLITRK6 WILD-TYPE" 
       TCGA-73-4670        TCGA-73-4675        TCGA-73-4676        TCGA-73-4677 
"SLITRK6 WILD-TYPE" "SLITRK6 WILD-TYPE" "SLITRK6 WILD-TYPE" "SLITRK6 WILD-TYPE" 
       TCGA-91-6828        TCGA-91-6829        TCGA-91-6831        TCGA-91-6835 
"SLITRK6 WILD-TYPE" "SLITRK6 WILD-TYPE" "SLITRK6 WILD-TYPE" "SLITRK6 WILD-TYPE" 
       TCGA-91-6836 
"SLITRK6 WILD-TYPE" 
       TCGA-05-4249        TCGA-05-4250        TCGA-05-4382        TCGA-05-4384 
"SLITRK6 WILD-TYPE" "SLITRK6 WILD-TYPE" "SLITRK6 WILD-TYPE" "SLITRK6 WILD-TYPE" 
       TCGA-05-4390        TCGA-05-4396        TCGA-05-4397        TCGA-05-4398 
"SLITRK6 WILD-TYPE"   "SLITRK6 MUTATED" "SLITRK6 WILD-TYPE" "SLITRK6 WILD-TYPE" 
       TCGA-05-4402        TCGA-05-4405        TCGA-05-4415        TCGA-05-4417 
"SLITRK6 WILD-TYPE" "SLITRK6 WILD-TYPE" "SLITRK6 WILD-TYPE" "SLITRK6 WILD-TYPE" 
       TCGA-05-4418        TCGA-05-4420        TCGA-05-4424        TCGA-05-4426 
"SLITRK6 WILD-TYPE" "SLITRK6 WILD-TYPE"   "SLITRK6 MUTATED" "SLITRK6 WILD-TYPE" 
       TCGA-05-4427        TCGA-05-4430        TCGA-05-4432        TCGA-05-4433 
  "SLITRK6 MUTATED" "SLITRK6 WILD-TYPE" "SLITRK6 WILD-TYPE" "SLITRK6 WILD-TYPE" 
       TCGA-05-4434        TCGA-05-5420        TCGA-05-5423        TCGA-05-5425 
"SLITRK6 WILD-TYPE" "SLITRK6 WILD-TYPE" "SLITRK6 WILD-TYPE" "SLITRK6 WILD-TYPE" 
       TCGA-05-5429        TCGA-05-5715        TCGA-35-3615        TCGA-35-4122 
"SLITRK6 WILD-TYPE" "SLITRK6 WILD-TYPE" "SLITRK6 WILD-TYPE" "SLITRK6 WILD-TYPE" 
       TCGA-35-4123        TCGA-35-5375        TCGA-38-4625        TCGA-38-4626 
"SLITRK6 WILD-TYPE" "SLITRK6 WILD-TYPE"   "SLITRK6 MUTATED" "SLITRK6 WILD-TYPE" 
       TCGA-38-4627        TCGA-38-4628        TCGA-38-4629        TCGA-38-4630 
"SLITRK6 WILD-TYPE" "SLITRK6 WILD-TYPE" "SLITRK6 WILD-TYPE" "SLITRK6 WILD-TYPE" 
       TCGA-38-4631        TCGA-38-4632        TCGA-38-6178        TCGA-44-2655 
"SLITRK6 WILD-TYPE" "SLITRK6 WILD-TYPE" "SLITRK6 WILD-TYPE"   "SLITRK6 MUTATED" 
       TCGA-44-2656        TCGA-44-2657        TCGA-44-2659        TCGA-44-2661 
  "SLITRK6 MUTATED" "SLITRK6 WILD-TYPE" "SLITRK6 WILD-TYPE" "SLITRK6 WILD-TYPE" 
       TCGA-44-2662        TCGA-44-2665        TCGA-44-2666        TCGA-44-2668 
"SLITRK6 WILD-TYPE" "SLITRK6 WILD-TYPE" "SLITRK6 WILD-TYPE" "SLITRK6 WILD-TYPE" 
       TCGA-44-3396        TCGA-44-3398        TCGA-44-3918        TCGA-44-3919 
"SLITRK6 WILD-TYPE" "SLITRK6 WILD-TYPE" "SLITRK6 WILD-TYPE" "SLITRK6 WILD-TYPE" 
       TCGA-44-4112        TCGA-44-5643        TCGA-44-5645        TCGA-44-6144 
"SLITRK6 WILD-TYPE" "SLITRK6 WILD-TYPE" "SLITRK6 WILD-TYPE" "SLITRK6 WILD-TYPE" 
       TCGA-44-6145        TCGA-44-6146        TCGA-44-6147        TCGA-44-6148 
"SLITRK6 WILD-TYPE" "SLITRK6 WILD-TYPE" "SLITRK6 WILD-TYPE" "SLITRK6 WILD-TYPE" 
       TCGA-44-6774        TCGA-44-6775        TCGA-44-6776        TCGA-44-6777 
"SLITRK6 WILD-TYPE" "SLITRK6 WILD-TYPE" "SLITRK6 WILD-TYPE" "SLITRK6 WILD-TYPE" 
       TCGA-44-6778        TCGA-44-6779        TCGA-49-4486        TCGA-49-4487 
"SLITRK6 WILD-TYPE" "SLITRK6 WILD-TYPE" "SLITRK6 WILD-TYPE" "SLITRK6 WILD-TYPE" 
       TCGA-49-4488        TCGA-49-4490        TCGA-49-4494        TCGA-49-4501 
"SLITRK6 WILD-TYPE" "SLITRK6 WILD-TYPE" "SLITRK6 WILD-TYPE" "SLITRK6 WILD-TYPE" 
       TCGA-49-4505        TCGA-49-4506        TCGA-49-4507        TCGA-49-4510 
"SLITRK6 WILD-TYPE" "SLITRK6 WILD-TYPE" "SLITRK6 WILD-TYPE" "SLITRK6 WILD-TYPE" 
       TCGA-49-4512        TCGA-49-4514        TCGA-49-6742        TCGA-49-6743 
"SLITRK6 WILD-TYPE" "SLITRK6 WILD-TYPE" "SLITRK6 WILD-TYPE" "SLITRK6 WILD-TYPE" 
       TCGA-49-6744        TCGA-49-6745        TCGA-50-5044        TCGA-50-5045 
"SLITRK6 WILD-TYPE" "SLITRK6 WILD-TYPE" "SLITRK6 WILD-TYPE" "SLITRK6 WILD-TYPE" 
       TCGA-50-5049        TCGA-50-5051        TCGA-50-5055        TCGA-50-5066 
"SLITRK6 WILD-TYPE" "SLITRK6 WILD-TYPE" "SLITRK6 WILD-TYPE" "SLITRK6 WILD-TYPE" 
       TCGA-50-5068        TCGA-50-5072        TCGA-50-5930        TCGA-50-5931 
"SLITRK6 WILD-TYPE" "SLITRK6 WILD-TYPE" "SLITRK6 WILD-TYPE" "SLITRK6 WILD-TYPE" 
       TCGA-50-5932        TCGA-50-5933        TCGA-50-5935        TCGA-50-5936 
"SLITRK6 WILD-TYPE" "SLITRK6 WILD-TYPE" "SLITRK6 WILD-TYPE" "SLITRK6 WILD-TYPE" 
       TCGA-50-5939        TCGA-50-5941        TCGA-50-5942        TCGA-50-5944 
"SLITRK6 WILD-TYPE"   "SLITRK6 MUTATED" "SLITRK6 WILD-TYPE" "SLITRK6 WILD-TYPE" 
       TCGA-50-5946        TCGA-50-6590        TCGA-50-6591        TCGA-50-6592 
"SLITRK6 WILD-TYPE" "SLITRK6 WILD-TYPE" "SLITRK6 WILD-TYPE" "SLITRK6 WILD-TYPE" 
       TCGA-50-6593        TCGA-50-6594        TCGA-50-6595        TCGA-50-6597 
"SLITRK6 WILD-TYPE" "SLITRK6 WILD-TYPE" "SLITRK6 WILD-TYPE" "SLITRK6 WILD-TYPE" 
       TCGA-55-1592        TCGA-55-1594        TCGA-55-1595        TCGA-55-1596 
"SLITRK6 WILD-TYPE" "SLITRK6 WILD-TYPE" "SLITRK6 WILD-TYPE" "SLITRK6 WILD-TYPE" 
       TCGA-55-5899        TCGA-55-6543        TCGA-55-6642        TCGA-55-6712 
  "SLITRK6 MUTATED" "SLITRK6 WILD-TYPE" "SLITRK6 WILD-TYPE" "SLITRK6 WILD-TYPE" 
       TCGA-64-1676        TCGA-64-1677        TCGA-64-1678        TCGA-64-1680 
"SLITRK6 WILD-TYPE" "SLITRK6 WILD-TYPE" "SLITRK6 WILD-TYPE" "SLITRK6 WILD-TYPE" 
       TCGA-64-5774        TCGA-64-5775        TCGA-64-5778        TCGA-64-5779 
"SLITRK6 WILD-TYPE" "SLITRK6 WILD-TYPE" "SLITRK6 WILD-TYPE" "SLITRK6 WILD-TYPE" 
       TCGA-64-5781        TCGA-64-5815        TCGA-67-3770        TCGA-67-3771 
"SLITRK6 WILD-TYPE" "SLITRK6 WILD-TYPE" "SLITRK6 WILD-TYPE" "SLITRK6 WILD-TYPE" 
       TCGA-67-3772        TCGA-67-3773        TCGA-67-3774        TCGA-67-6215 
"SLITRK6 WILD-TYPE" "SLITRK6 WILD-TYPE" "SLITRK6 WILD-TYPE" "SLITRK6 WILD-TYPE" 
       TCGA-67-6216        TCGA-67-6217        TCGA-71-6725        TCGA-73-4658 
"SLITRK6 WILD-TYPE"   "SLITRK6 MUTATED" "SLITRK6 WILD-TYPE" "SLITRK6 WILD-TYPE" 
       TCGA-73-4659        TCGA-73-4662        TCGA-73-4666        TCGA-73-4668 
"SLITRK6 WILD-TYPE" "SLITRK6 WILD-TYPE" "SLITRK6 WILD-TYPE" "SLITRK6 WILD-TYPE" 
       TCGA-73-4670        TCGA-73-4675        TCGA-73-4676        TCGA-73-4677 
"SLITRK6 WILD-TYPE" "SLITRK6 WILD-TYPE" "SLITRK6 WILD-TYPE" "SLITRK6 WILD-TYPE" 
       TCGA-91-6828        TCGA-91-6829        TCGA-91-6831        TCGA-91-6835 
"SLITRK6 WILD-TYPE" "SLITRK6 WILD-TYPE" "SLITRK6 WILD-TYPE" "SLITRK6 WILD-TYPE" 
       TCGA-91-6836 
"SLITRK6 WILD-TYPE" 
       TCGA-05-4249        TCGA-05-4250        TCGA-05-4382        TCGA-05-4384 
"SLITRK6 WILD-TYPE" "SLITRK6 WILD-TYPE" "SLITRK6 WILD-TYPE" "SLITRK6 WILD-TYPE" 
       TCGA-05-4390        TCGA-05-4396        TCGA-05-4397        TCGA-05-4398 
"SLITRK6 WILD-TYPE"   "SLITRK6 MUTATED" "SLITRK6 WILD-TYPE" "SLITRK6 WILD-TYPE" 
       TCGA-05-4402        TCGA-05-4405        TCGA-05-4415        TCGA-05-4417 
"SLITRK6 WILD-TYPE" "SLITRK6 WILD-TYPE" "SLITRK6 WILD-TYPE" "SLITRK6 WILD-TYPE" 
       TCGA-05-4418        TCGA-05-4420        TCGA-05-4424        TCGA-05-4426 
"SLITRK6 WILD-TYPE" "SLITRK6 WILD-TYPE"   "SLITRK6 MUTATED" "SLITRK6 WILD-TYPE" 
       TCGA-05-4427        TCGA-05-4430        TCGA-05-4432        TCGA-05-4433 
  "SLITRK6 MUTATED" "SLITRK6 WILD-TYPE" "SLITRK6 WILD-TYPE" "SLITRK6 WILD-TYPE" 
       TCGA-05-4434        TCGA-05-5420        TCGA-05-5423        TCGA-05-5425 
"SLITRK6 WILD-TYPE" "SLITRK6 WILD-TYPE" "SLITRK6 WILD-TYPE" "SLITRK6 WILD-TYPE" 
       TCGA-05-5429        TCGA-05-5715        TCGA-35-3615        TCGA-35-4122 
"SLITRK6 WILD-TYPE" "SLITRK6 WILD-TYPE" "SLITRK6 WILD-TYPE" "SLITRK6 WILD-TYPE" 
       TCGA-35-4123        TCGA-35-5375        TCGA-38-4625        TCGA-38-4626 
"SLITRK6 WILD-TYPE" "SLITRK6 WILD-TYPE"   "SLITRK6 MUTATED" "SLITRK6 WILD-TYPE" 
       TCGA-38-4627        TCGA-38-4628        TCGA-38-4629        TCGA-38-4630 
"SLITRK6 WILD-TYPE" "SLITRK6 WILD-TYPE" "SLITRK6 WILD-TYPE" "SLITRK6 WILD-TYPE" 
       TCGA-38-4631        TCGA-38-4632        TCGA-38-6178        TCGA-44-2655 
"SLITRK6 WILD-TYPE" "SLITRK6 WILD-TYPE" "SLITRK6 WILD-TYPE"   "SLITRK6 MUTATED" 
       TCGA-44-2656        TCGA-44-2657        TCGA-44-2659        TCGA-44-2661 
  "SLITRK6 MUTATED" "SLITRK6 WILD-TYPE" "SLITRK6 WILD-TYPE" "SLITRK6 WILD-TYPE" 
       TCGA-44-2662        TCGA-44-2665        TCGA-44-2666        TCGA-44-2668 
"SLITRK6 WILD-TYPE" "SLITRK6 WILD-TYPE" "SLITRK6 WILD-TYPE" "SLITRK6 WILD-TYPE" 
       TCGA-44-3396        TCGA-44-3398        TCGA-44-3918        TCGA-44-3919 
"SLITRK6 WILD-TYPE" "SLITRK6 WILD-TYPE" "SLITRK6 WILD-TYPE" "SLITRK6 WILD-TYPE" 
       TCGA-44-4112        TCGA-44-5643        TCGA-44-5645        TCGA-44-6144 
"SLITRK6 WILD-TYPE" "SLITRK6 WILD-TYPE" "SLITRK6 WILD-TYPE" "SLITRK6 WILD-TYPE" 
       TCGA-44-6145        TCGA-44-6146        TCGA-44-6147        TCGA-44-6148 
"SLITRK6 WILD-TYPE" "SLITRK6 WILD-TYPE" "SLITRK6 WILD-TYPE" "SLITRK6 WILD-TYPE" 
       TCGA-44-6774        TCGA-44-6775        TCGA-44-6776        TCGA-44-6777 
"SLITRK6 WILD-TYPE" "SLITRK6 WILD-TYPE" "SLITRK6 WILD-TYPE" "SLITRK6 WILD-TYPE" 
       TCGA-44-6778        TCGA-44-6779        TCGA-49-4486        TCGA-49-4487 
"SLITRK6 WILD-TYPE" "SLITRK6 WILD-TYPE" "SLITRK6 WILD-TYPE" "SLITRK6 WILD-TYPE" 
       TCGA-49-4488        TCGA-49-4490        TCGA-49-4494        TCGA-49-4501 
"SLITRK6 WILD-TYPE" "SLITRK6 WILD-TYPE" "SLITRK6 WILD-TYPE" "SLITRK6 WILD-TYPE" 
       TCGA-49-4505        TCGA-49-4506        TCGA-49-4507        TCGA-49-4510 
"SLITRK6 WILD-TYPE" "SLITRK6 WILD-TYPE" "SLITRK6 WILD-TYPE" "SLITRK6 WILD-TYPE" 
       TCGA-49-4512        TCGA-49-4514        TCGA-49-6742        TCGA-49-6743 
"SLITRK6 WILD-TYPE" "SLITRK6 WILD-TYPE" "SLITRK6 WILD-TYPE" "SLITRK6 WILD-TYPE" 
       TCGA-49-6744        TCGA-49-6745        TCGA-50-5044        TCGA-50-5045 
"SLITRK6 WILD-TYPE" "SLITRK6 WILD-TYPE" "SLITRK6 WILD-TYPE" "SLITRK6 WILD-TYPE" 
       TCGA-50-5049        TCGA-50-5051        TCGA-50-5055        TCGA-50-5066 
"SLITRK6 WILD-TYPE" "SLITRK6 WILD-TYPE" "SLITRK6 WILD-TYPE" "SLITRK6 WILD-TYPE" 
       TCGA-50-5068        TCGA-50-5072        TCGA-50-5930        TCGA-50-5931 
"SLITRK6 WILD-TYPE" "SLITRK6 WILD-TYPE" "SLITRK6 WILD-TYPE" "SLITRK6 WILD-TYPE" 
       TCGA-50-5932        TCGA-50-5933        TCGA-50-5935        TCGA-50-5936 
"SLITRK6 WILD-TYPE" "SLITRK6 WILD-TYPE" "SLITRK6 WILD-TYPE" "SLITRK6 WILD-TYPE" 
       TCGA-50-5939        TCGA-50-5941        TCGA-50-5942        TCGA-50-5944 
"SLITRK6 WILD-TYPE"   "SLITRK6 MUTATED" "SLITRK6 WILD-TYPE" "SLITRK6 WILD-TYPE" 
       TCGA-50-5946        TCGA-50-6590        TCGA-50-6591        TCGA-50-6592 
"SLITRK6 WILD-TYPE" "SLITRK6 WILD-TYPE" "SLITRK6 WILD-TYPE" "SLITRK6 WILD-TYPE" 
       TCGA-50-6593        TCGA-50-6594        TCGA-50-6595        TCGA-50-6597 
"SLITRK6 WILD-TYPE" "SLITRK6 WILD-TYPE" "SLITRK6 WILD-TYPE" "SLITRK6 WILD-TYPE" 
       TCGA-55-1592        TCGA-55-1594        TCGA-55-1595        TCGA-55-1596 
"SLITRK6 WILD-TYPE" "SLITRK6 WILD-TYPE" "SLITRK6 WILD-TYPE" "SLITRK6 WILD-TYPE" 
       TCGA-55-5899        TCGA-55-6543        TCGA-55-6642        TCGA-55-6712 
  "SLITRK6 MUTATED" "SLITRK6 WILD-TYPE" "SLITRK6 WILD-TYPE" "SLITRK6 WILD-TYPE" 
       TCGA-64-1676        TCGA-64-1677        TCGA-64-1678        TCGA-64-1680 
"SLITRK6 WILD-TYPE" "SLITRK6 WILD-TYPE" "SLITRK6 WILD-TYPE" "SLITRK6 WILD-TYPE" 
       TCGA-64-5774        TCGA-64-5775        TCGA-64-5778        TCGA-64-5779 
"SLITRK6 WILD-TYPE" "SLITRK6 WILD-TYPE" "SLITRK6 WILD-TYPE" "SLITRK6 WILD-TYPE" 
       TCGA-64-5781        TCGA-64-5815        TCGA-67-3770        TCGA-67-3771 
"SLITRK6 WILD-TYPE" "SLITRK6 WILD-TYPE" "SLITRK6 WILD-TYPE" "SLITRK6 WILD-TYPE" 
       TCGA-67-3772        TCGA-67-3773        TCGA-67-3774        TCGA-67-6215 
"SLITRK6 WILD-TYPE" "SLITRK6 WILD-TYPE" "SLITRK6 WILD-TYPE" "SLITRK6 WILD-TYPE" 
       TCGA-67-6216        TCGA-67-6217        TCGA-71-6725        TCGA-73-4658 
"SLITRK6 WILD-TYPE"   "SLITRK6 MUTATED" "SLITRK6 WILD-TYPE" "SLITRK6 WILD-TYPE" 
       TCGA-73-4659        TCGA-73-4662        TCGA-73-4666        TCGA-73-4668 
"SLITRK6 WILD-TYPE" "SLITRK6 WILD-TYPE" "SLITRK6 WILD-TYPE" "SLITRK6 WILD-TYPE" 
       TCGA-73-4670        TCGA-73-4675        TCGA-73-4676        TCGA-73-4677 
"SLITRK6 WILD-TYPE" "SLITRK6 WILD-TYPE" "SLITRK6 WILD-TYPE" "SLITRK6 WILD-TYPE" 
       TCGA-91-6828        TCGA-91-6829        TCGA-91-6831        TCGA-91-6835 
"SLITRK6 WILD-TYPE" "SLITRK6 WILD-TYPE" "SLITRK6 WILD-TYPE" "SLITRK6 WILD-TYPE" 
       TCGA-91-6836 
"SLITRK6 WILD-TYPE" 
[1] "hr=" "2.8"
D270V2, continuous
D270V3, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  SLITRK6 MUTATED      5    5
  SLITRK6 WILD-TYPE   88   74
        clus
vv       SLITRK6 MUTATED SLITRK6 WILD-TYPE
  FEMALE               5                88
  MALE                 5                74
D270V4, continuous
D270V5, multiclass
D270V6, multiclass
    clus
vv   SLITRK6 MUTATED SLITRK6 WILD-TYPE
  T1               2                39
  T2               6               102
  T3               1                13
  T4               1                 7
D270V7, multiclass
       clus
vv      SLITRK6 MUTATED SLITRK6 WILD-TYPE
  N0                  5                90
  N1                  4                33
  N2+N3               1                34
D270V8, multiclass
    clus
vv   SLITRK6 MUTATED SLITRK6 WILD-TYPE
  M0              10               127
  M1               0                 9
  MX               0                22
D270V9, multiclass
     clus
vv    SLITRK6 MUTATED SLITRK6 WILD-TYPE
  I                 5                83
  II                3                30
  III               2                37
  IV                0                 9
D270V10, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  SLITRK6 MUTATED      0   10
  SLITRK6 WILD-TYPE   16  146
     clus
vv    SLITRK6 MUTATED SLITRK6 WILD-TYPE
  NO                0                16
  YES              10               146
D270V11, continuous
D270V12, continuous
D270V13, multiclass
                                             clus
vv                                            SLITRK6 MUTATED SLITRK6 WILD-TYPE
  CURRENT REFORMED SMOKER FOR < OR = 15 YEARS               4                58
  CURRENT REFORMED SMOKER FOR > 15 YEARS                    3                43
  CURRENT SMOKER                                            3                25
  LIFELONG NON-SMOKER                                       0                24
D270V14, continuous

Clustering(271) Variable = TRIM72 MUTATION ANALYSIS
D271V1, survival
                  sevent
clus2               0  1
  TRIM72 MUTATED    4  2
  TRIM72 WILD-TYPE 95 48
  TRIM72 MUTATED TRIM72 WILD-TYPE 
               6              143 
  TRIM72 MUTATED TRIM72 WILD-TYPE 
               2               48 
$`TRIM72 MUTATED`
TCGA-05-4390 TCGA-38-6178 TCGA-50-5045 TCGA-50-5933 TCGA-64-5815 TCGA-73-4666 
       37.02         5.19        71.47        77.88         7.33        20.28 

$`TRIM72 WILD-TYPE`
TCGA-05-4249 TCGA-05-4250 TCGA-05-4382 TCGA-05-4384 TCGA-05-4396 TCGA-05-4397 
       38.07         3.98        19.92        14.01         9.96        24.03 
TCGA-05-4398 TCGA-05-4402 TCGA-05-4405 TCGA-05-4415 TCGA-05-4417 TCGA-05-4418 
       47.05         8.02        20.05         2.96        14.93         8.98 
TCGA-05-4420 TCGA-05-4424 TCGA-05-4426 TCGA-05-4427 TCGA-05-4430 TCGA-05-4432 
       29.95        30.02        26.01        26.01        25.02        25.02 
TCGA-05-4433 TCGA-05-4434 TCGA-05-5420 TCGA-05-5423 TCGA-05-5425 TCGA-05-5429 
       24.00        15.02         1.02         4.96         2.96         0.99 
TCGA-05-5715 TCGA-35-3615 TCGA-35-4122 TCGA-35-4123 TCGA-35-5375 TCGA-38-4625 
        2.04         0.46         7.36         5.95         8.68        47.61 
TCGA-38-4626 TCGA-38-4627 TCGA-38-4628 TCGA-38-4629 TCGA-38-4630 TCGA-38-4631 
       85.32        37.71        49.02        28.37        35.28        11.64 
TCGA-38-4632 TCGA-44-2655 TCGA-44-2656 TCGA-44-2657 TCGA-44-2659 TCGA-44-2661 
       44.61        18.87        19.10        13.15        17.39         3.39 
TCGA-44-2662 TCGA-44-2665 TCGA-44-2666 TCGA-44-2668 TCGA-44-3396 TCGA-44-3398 
       15.78        13.15         3.19         8.09        10.22         8.32 
TCGA-44-3918 TCGA-44-3919 TCGA-44-4112 TCGA-44-5643 TCGA-44-5645 TCGA-44-6144 
        6.44         6.21         4.60         3.48         6.84         0.30 
TCGA-44-6145 TCGA-44-6146 TCGA-44-6147 TCGA-44-6148 TCGA-44-6774 TCGA-44-6775 
        3.35         9.93         7.76         3.12         5.42         2.70 
TCGA-44-6776 TCGA-44-6777 TCGA-44-6778 TCGA-44-6779 TCGA-49-4486 TCGA-49-4487 
       63.72        32.45        36.49        16.41        76.21        28.11 
TCGA-49-4488 TCGA-49-4490 TCGA-49-4494 TCGA-49-4501 TCGA-49-4505 TCGA-49-4506 
       28.57        12.66        35.54        46.72        14.07        32.84 
TCGA-49-4507 TCGA-49-4510 TCGA-49-4512 TCGA-49-4514 TCGA-49-6742 TCGA-49-6743 
        8.81        29.46        29.75        43.20        15.02        12.13 
TCGA-49-6744 TCGA-49-6745 TCGA-50-5044 TCGA-50-5049 TCGA-50-5051 TCGA-50-5055 
       12.99         4.93        20.48        48.82        14.96        25.81 
TCGA-50-5066 TCGA-50-5068 TCGA-50-5072 TCGA-50-5930 TCGA-50-5931 TCGA-50-5932 
        9.76        49.28         8.05         9.27         8.78        35.87 
TCGA-50-5935 TCGA-50-5936 TCGA-50-5939 TCGA-50-5941 TCGA-50-5942 TCGA-50-5944 
       21.47         8.45        15.12         9.37         4.44        12.26 
TCGA-50-5946 TCGA-50-6590 TCGA-50-6591 TCGA-50-6592 TCGA-50-6593 TCGA-50-6594 
       11.47        42.31         3.88        25.51        11.05        12.16 
TCGA-50-6595 TCGA-50-6597 TCGA-55-1592 TCGA-55-1594 TCGA-55-1595 TCGA-55-1596 
        6.21        33.37        23.05        38.73        48.62        45.17 
TCGA-55-5899 TCGA-55-6543 TCGA-55-6642 TCGA-55-6712 TCGA-64-1676 TCGA-64-1677 
        2.86         0.07        32.61         0.79        56.81        20.65 
TCGA-64-1678 TCGA-64-1680 TCGA-64-5774 TCGA-64-5775 TCGA-64-5778 TCGA-64-5779 
       39.09        37.02        83.84         0.10        30.44        16.67 
TCGA-64-5781 TCGA-67-3770 TCGA-67-3771 TCGA-67-3772 TCGA-67-3773 TCGA-67-3774 
       39.52         0.99         1.97         0.59         2.04         0.59 
TCGA-67-6215 TCGA-67-6216 TCGA-67-6217 TCGA-71-6725 TCGA-73-4658 TCGA-73-4659 
        0.89         0.69        13.87         2.01        52.57        23.38 
TCGA-73-4662 TCGA-73-4668 TCGA-73-4670 TCGA-73-4675 TCGA-73-4676 TCGA-73-4677 
       29.95        15.35         0.46         1.32         4.01         1.25 
TCGA-91-6828 TCGA-91-6829 TCGA-91-6831 TCGA-91-6835 TCGA-91-6836 
        1.22        41.33         1.28         1.15         0.36 

  TRIM72 MUTATED TRIM72 WILD-TYPE 
            5.19             0.07 
  TRIM72 MUTATED TRIM72 WILD-TYPE 
           77.88            85.32 
  TRIM72 MUTATED TRIM72 WILD-TYPE 
           28.65            13.15 
[1] "5.2 - 77.9 (28.7)" "0.1 - 85.3 (13.2)"
      TCGA-05-4249       TCGA-05-4250       TCGA-05-4382       TCGA-05-4384 
"TRIM72 WILD-TYPE" "TRIM72 WILD-TYPE" "TRIM72 WILD-TYPE" "TRIM72 WILD-TYPE" 
      TCGA-05-4390       TCGA-05-4396       TCGA-05-4397       TCGA-05-4398 
  "TRIM72 MUTATED" "TRIM72 WILD-TYPE" "TRIM72 WILD-TYPE" "TRIM72 WILD-TYPE" 
      TCGA-05-4402       TCGA-05-4405       TCGA-05-4415       TCGA-05-4417 
"TRIM72 WILD-TYPE" "TRIM72 WILD-TYPE" "TRIM72 WILD-TYPE" "TRIM72 WILD-TYPE" 
      TCGA-05-4418       TCGA-05-4420       TCGA-05-4424       TCGA-05-4426 
"TRIM72 WILD-TYPE" "TRIM72 WILD-TYPE" "TRIM72 WILD-TYPE" "TRIM72 WILD-TYPE" 
      TCGA-05-4427       TCGA-05-4430       TCGA-05-4432       TCGA-05-4433 
"TRIM72 WILD-TYPE" "TRIM72 WILD-TYPE" "TRIM72 WILD-TYPE" "TRIM72 WILD-TYPE" 
      TCGA-05-4434       TCGA-05-5420       TCGA-05-5423       TCGA-05-5425 
"TRIM72 WILD-TYPE" "TRIM72 WILD-TYPE" "TRIM72 WILD-TYPE" "TRIM72 WILD-TYPE" 
      TCGA-05-5429       TCGA-05-5715       TCGA-35-3615       TCGA-35-4122 
"TRIM72 WILD-TYPE" "TRIM72 WILD-TYPE" "TRIM72 WILD-TYPE" "TRIM72 WILD-TYPE" 
      TCGA-35-4123       TCGA-35-5375       TCGA-38-4625       TCGA-38-4626 
"TRIM72 WILD-TYPE" "TRIM72 WILD-TYPE" "TRIM72 WILD-TYPE" "TRIM72 WILD-TYPE" 
      TCGA-38-4627       TCGA-38-4628       TCGA-38-4629       TCGA-38-4630 
"TRIM72 WILD-TYPE" "TRIM72 WILD-TYPE" "TRIM72 WILD-TYPE" "TRIM72 WILD-TYPE" 
      TCGA-38-4631       TCGA-38-4632       TCGA-38-6178       TCGA-44-2655 
"TRIM72 WILD-TYPE" "TRIM72 WILD-TYPE"   "TRIM72 MUTATED" "TRIM72 WILD-TYPE" 
      TCGA-44-2656       TCGA-44-2657       TCGA-44-2659       TCGA-44-2661 
"TRIM72 WILD-TYPE" "TRIM72 WILD-TYPE" "TRIM72 WILD-TYPE" "TRIM72 WILD-TYPE" 
      TCGA-44-2662       TCGA-44-2665       TCGA-44-2666       TCGA-44-2668 
"TRIM72 WILD-TYPE" "TRIM72 WILD-TYPE" "TRIM72 WILD-TYPE" "TRIM72 WILD-TYPE" 
      TCGA-44-3396       TCGA-44-3398       TCGA-44-3918       TCGA-44-3919 
"TRIM72 WILD-TYPE" "TRIM72 WILD-TYPE" "TRIM72 WILD-TYPE" "TRIM72 WILD-TYPE" 
      TCGA-44-4112       TCGA-44-5643       TCGA-44-5645       TCGA-44-6144 
"TRIM72 WILD-TYPE" "TRIM72 WILD-TYPE" "TRIM72 WILD-TYPE" "TRIM72 WILD-TYPE" 
      TCGA-44-6145       TCGA-44-6146       TCGA-44-6147       TCGA-44-6148 
"TRIM72 WILD-TYPE" "TRIM72 WILD-TYPE" "TRIM72 WILD-TYPE" "TRIM72 WILD-TYPE" 
      TCGA-44-6774       TCGA-44-6775       TCGA-44-6776       TCGA-44-6777 
"TRIM72 WILD-TYPE" "TRIM72 WILD-TYPE" "TRIM72 WILD-TYPE" "TRIM72 WILD-TYPE" 
      TCGA-44-6778       TCGA-44-6779       TCGA-49-4486       TCGA-49-4487 
"TRIM72 WILD-TYPE" "TRIM72 WILD-TYPE" "TRIM72 WILD-TYPE" "TRIM72 WILD-TYPE" 
      TCGA-49-4488       TCGA-49-4490       TCGA-49-4494       TCGA-49-4501 
"TRIM72 WILD-TYPE" "TRIM72 WILD-TYPE" "TRIM72 WILD-TYPE" "TRIM72 WILD-TYPE" 
      TCGA-49-4505       TCGA-49-4506       TCGA-49-4507       TCGA-49-4510 
"TRIM72 WILD-TYPE" "TRIM72 WILD-TYPE" "TRIM72 WILD-TYPE" "TRIM72 WILD-TYPE" 
      TCGA-49-4512       TCGA-49-4514       TCGA-49-6742       TCGA-49-6743 
"TRIM72 WILD-TYPE" "TRIM72 WILD-TYPE" "TRIM72 WILD-TYPE" "TRIM72 WILD-TYPE" 
      TCGA-49-6744       TCGA-49-6745       TCGA-50-5044       TCGA-50-5045 
"TRIM72 WILD-TYPE" "TRIM72 WILD-TYPE" "TRIM72 WILD-TYPE"   "TRIM72 MUTATED" 
      TCGA-50-5049       TCGA-50-5051       TCGA-50-5055       TCGA-50-5066 
"TRIM72 WILD-TYPE" "TRIM72 WILD-TYPE" "TRIM72 WILD-TYPE" "TRIM72 WILD-TYPE" 
      TCGA-50-5068       TCGA-50-5072       TCGA-50-5930       TCGA-50-5931 
"TRIM72 WILD-TYPE" "TRIM72 WILD-TYPE" "TRIM72 WILD-TYPE" "TRIM72 WILD-TYPE" 
      TCGA-50-5932       TCGA-50-5933       TCGA-50-5935       TCGA-50-5936 
"TRIM72 WILD-TYPE"   "TRIM72 MUTATED" "TRIM72 WILD-TYPE" "TRIM72 WILD-TYPE" 
      TCGA-50-5939       TCGA-50-5941       TCGA-50-5942       TCGA-50-5944 
"TRIM72 WILD-TYPE" "TRIM72 WILD-TYPE" "TRIM72 WILD-TYPE" "TRIM72 WILD-TYPE" 
      TCGA-50-5946       TCGA-50-6590       TCGA-50-6591       TCGA-50-6592 
"TRIM72 WILD-TYPE" "TRIM72 WILD-TYPE" "TRIM72 WILD-TYPE" "TRIM72 WILD-TYPE" 
      TCGA-50-6593       TCGA-50-6594       TCGA-50-6595       TCGA-50-6597 
"TRIM72 WILD-TYPE" "TRIM72 WILD-TYPE" "TRIM72 WILD-TYPE" "TRIM72 WILD-TYPE" 
      TCGA-55-1592       TCGA-55-1594       TCGA-55-1595       TCGA-55-1596 
"TRIM72 WILD-TYPE" "TRIM72 WILD-TYPE" "TRIM72 WILD-TYPE" "TRIM72 WILD-TYPE" 
      TCGA-55-5899       TCGA-55-6543       TCGA-55-6642       TCGA-55-6712 
"TRIM72 WILD-TYPE" "TRIM72 WILD-TYPE" "TRIM72 WILD-TYPE" "TRIM72 WILD-TYPE" 
      TCGA-64-1676       TCGA-64-1677       TCGA-64-1678       TCGA-64-1680 
"TRIM72 WILD-TYPE" "TRIM72 WILD-TYPE" "TRIM72 WILD-TYPE" "TRIM72 WILD-TYPE" 
      TCGA-64-5774       TCGA-64-5775       TCGA-64-5778       TCGA-64-5779 
"TRIM72 WILD-TYPE" "TRIM72 WILD-TYPE" "TRIM72 WILD-TYPE" "TRIM72 WILD-TYPE" 
      TCGA-64-5781       TCGA-64-5815       TCGA-67-3770       TCGA-67-3771 
"TRIM72 WILD-TYPE"   "TRIM72 MUTATED" "TRIM72 WILD-TYPE" "TRIM72 WILD-TYPE" 
      TCGA-67-3772       TCGA-67-3773       TCGA-67-3774       TCGA-67-6215 
"TRIM72 WILD-TYPE" "TRIM72 WILD-TYPE" "TRIM72 WILD-TYPE" "TRIM72 WILD-TYPE" 
      TCGA-67-6216       TCGA-67-6217       TCGA-71-6725       TCGA-73-4658 
"TRIM72 WILD-TYPE" "TRIM72 WILD-TYPE" "TRIM72 WILD-TYPE" "TRIM72 WILD-TYPE" 
      TCGA-73-4659       TCGA-73-4662       TCGA-73-4666       TCGA-73-4668 
"TRIM72 WILD-TYPE" "TRIM72 WILD-TYPE"   "TRIM72 MUTATED" "TRIM72 WILD-TYPE" 
      TCGA-73-4670       TCGA-73-4675       TCGA-73-4676       TCGA-73-4677 
"TRIM72 WILD-TYPE" "TRIM72 WILD-TYPE" "TRIM72 WILD-TYPE" "TRIM72 WILD-TYPE" 
      TCGA-91-6828       TCGA-91-6829       TCGA-91-6831       TCGA-91-6835 
"TRIM72 WILD-TYPE" "TRIM72 WILD-TYPE" "TRIM72 WILD-TYPE" "TRIM72 WILD-TYPE" 
      TCGA-91-6836 
"TRIM72 WILD-TYPE" 
      TCGA-05-4249       TCGA-05-4250       TCGA-05-4382       TCGA-05-4384 
"TRIM72 WILD-TYPE" "TRIM72 WILD-TYPE" "TRIM72 WILD-TYPE" "TRIM72 WILD-TYPE" 
      TCGA-05-4390       TCGA-05-4396       TCGA-05-4397       TCGA-05-4398 
  "TRIM72 MUTATED" "TRIM72 WILD-TYPE" "TRIM72 WILD-TYPE" "TRIM72 WILD-TYPE" 
      TCGA-05-4402       TCGA-05-4405       TCGA-05-4415       TCGA-05-4417 
"TRIM72 WILD-TYPE" "TRIM72 WILD-TYPE" "TRIM72 WILD-TYPE" "TRIM72 WILD-TYPE" 
      TCGA-05-4418       TCGA-05-4420       TCGA-05-4424       TCGA-05-4426 
"TRIM72 WILD-TYPE" "TRIM72 WILD-TYPE" "TRIM72 WILD-TYPE" "TRIM72 WILD-TYPE" 
      TCGA-05-4427       TCGA-05-4430       TCGA-05-4432       TCGA-05-4433 
"TRIM72 WILD-TYPE" "TRIM72 WILD-TYPE" "TRIM72 WILD-TYPE" "TRIM72 WILD-TYPE" 
      TCGA-05-4434       TCGA-05-5420       TCGA-05-5423       TCGA-05-5425 
"TRIM72 WILD-TYPE" "TRIM72 WILD-TYPE" "TRIM72 WILD-TYPE" "TRIM72 WILD-TYPE" 
      TCGA-05-5429       TCGA-05-5715       TCGA-35-3615       TCGA-35-4122 
"TRIM72 WILD-TYPE" "TRIM72 WILD-TYPE" "TRIM72 WILD-TYPE" "TRIM72 WILD-TYPE" 
      TCGA-35-4123       TCGA-35-5375       TCGA-38-4625       TCGA-38-4626 
"TRIM72 WILD-TYPE" "TRIM72 WILD-TYPE" "TRIM72 WILD-TYPE" "TRIM72 WILD-TYPE" 
      TCGA-38-4627       TCGA-38-4628       TCGA-38-4629       TCGA-38-4630 
"TRIM72 WILD-TYPE" "TRIM72 WILD-TYPE" "TRIM72 WILD-TYPE" "TRIM72 WILD-TYPE" 
      TCGA-38-4631       TCGA-38-4632       TCGA-38-6178       TCGA-44-2655 
"TRIM72 WILD-TYPE" "TRIM72 WILD-TYPE"   "TRIM72 MUTATED" "TRIM72 WILD-TYPE" 
      TCGA-44-2656       TCGA-44-2657       TCGA-44-2659       TCGA-44-2661 
"TRIM72 WILD-TYPE" "TRIM72 WILD-TYPE" "TRIM72 WILD-TYPE" "TRIM72 WILD-TYPE" 
      TCGA-44-2662       TCGA-44-2665       TCGA-44-2666       TCGA-44-2668 
"TRIM72 WILD-TYPE" "TRIM72 WILD-TYPE" "TRIM72 WILD-TYPE" "TRIM72 WILD-TYPE" 
      TCGA-44-3396       TCGA-44-3398       TCGA-44-3918       TCGA-44-3919 
"TRIM72 WILD-TYPE" "TRIM72 WILD-TYPE" "TRIM72 WILD-TYPE" "TRIM72 WILD-TYPE" 
      TCGA-44-4112       TCGA-44-5643       TCGA-44-5645       TCGA-44-6144 
"TRIM72 WILD-TYPE" "TRIM72 WILD-TYPE" "TRIM72 WILD-TYPE" "TRIM72 WILD-TYPE" 
      TCGA-44-6145       TCGA-44-6146       TCGA-44-6147       TCGA-44-6148 
"TRIM72 WILD-TYPE" "TRIM72 WILD-TYPE" "TRIM72 WILD-TYPE" "TRIM72 WILD-TYPE" 
      TCGA-44-6774       TCGA-44-6775       TCGA-44-6776       TCGA-44-6777 
"TRIM72 WILD-TYPE" "TRIM72 WILD-TYPE" "TRIM72 WILD-TYPE" "TRIM72 WILD-TYPE" 
      TCGA-44-6778       TCGA-44-6779       TCGA-49-4486       TCGA-49-4487 
"TRIM72 WILD-TYPE" "TRIM72 WILD-TYPE" "TRIM72 WILD-TYPE" "TRIM72 WILD-TYPE" 
      TCGA-49-4488       TCGA-49-4490       TCGA-49-4494       TCGA-49-4501 
"TRIM72 WILD-TYPE" "TRIM72 WILD-TYPE" "TRIM72 WILD-TYPE" "TRIM72 WILD-TYPE" 
      TCGA-49-4505       TCGA-49-4506       TCGA-49-4507       TCGA-49-4510 
"TRIM72 WILD-TYPE" "TRIM72 WILD-TYPE" "TRIM72 WILD-TYPE" "TRIM72 WILD-TYPE" 
      TCGA-49-4512       TCGA-49-4514       TCGA-49-6742       TCGA-49-6743 
"TRIM72 WILD-TYPE" "TRIM72 WILD-TYPE" "TRIM72 WILD-TYPE" "TRIM72 WILD-TYPE" 
      TCGA-49-6744       TCGA-49-6745       TCGA-50-5044       TCGA-50-5045 
"TRIM72 WILD-TYPE" "TRIM72 WILD-TYPE" "TRIM72 WILD-TYPE"   "TRIM72 MUTATED" 
      TCGA-50-5049       TCGA-50-5051       TCGA-50-5055       TCGA-50-5066 
"TRIM72 WILD-TYPE" "TRIM72 WILD-TYPE" "TRIM72 WILD-TYPE" "TRIM72 WILD-TYPE" 
      TCGA-50-5068       TCGA-50-5072       TCGA-50-5930       TCGA-50-5931 
"TRIM72 WILD-TYPE" "TRIM72 WILD-TYPE" "TRIM72 WILD-TYPE" "TRIM72 WILD-TYPE" 
      TCGA-50-5932       TCGA-50-5933       TCGA-50-5935       TCGA-50-5936 
"TRIM72 WILD-TYPE"   "TRIM72 MUTATED" "TRIM72 WILD-TYPE" "TRIM72 WILD-TYPE" 
      TCGA-50-5939       TCGA-50-5941       TCGA-50-5942       TCGA-50-5944 
"TRIM72 WILD-TYPE" "TRIM72 WILD-TYPE" "TRIM72 WILD-TYPE" "TRIM72 WILD-TYPE" 
      TCGA-50-5946       TCGA-50-6590       TCGA-50-6591       TCGA-50-6592 
"TRIM72 WILD-TYPE" "TRIM72 WILD-TYPE" "TRIM72 WILD-TYPE" "TRIM72 WILD-TYPE" 
      TCGA-50-6593       TCGA-50-6594       TCGA-50-6595       TCGA-50-6597 
"TRIM72 WILD-TYPE" "TRIM72 WILD-TYPE" "TRIM72 WILD-TYPE" "TRIM72 WILD-TYPE" 
      TCGA-55-1592       TCGA-55-1594       TCGA-55-1595       TCGA-55-1596 
"TRIM72 WILD-TYPE" "TRIM72 WILD-TYPE" "TRIM72 WILD-TYPE" "TRIM72 WILD-TYPE" 
      TCGA-55-5899       TCGA-55-6543       TCGA-55-6642       TCGA-55-6712 
"TRIM72 WILD-TYPE" "TRIM72 WILD-TYPE" "TRIM72 WILD-TYPE" "TRIM72 WILD-TYPE" 
      TCGA-64-1676       TCGA-64-1677       TCGA-64-1678       TCGA-64-1680 
"TRIM72 WILD-TYPE" "TRIM72 WILD-TYPE" "TRIM72 WILD-TYPE" "TRIM72 WILD-TYPE" 
      TCGA-64-5774       TCGA-64-5775       TCGA-64-5778       TCGA-64-5779 
"TRIM72 WILD-TYPE" "TRIM72 WILD-TYPE" "TRIM72 WILD-TYPE" "TRIM72 WILD-TYPE" 
      TCGA-64-5781       TCGA-64-5815       TCGA-67-3770       TCGA-67-3771 
"TRIM72 WILD-TYPE"   "TRIM72 MUTATED" "TRIM72 WILD-TYPE" "TRIM72 WILD-TYPE" 
      TCGA-67-3772       TCGA-67-3773       TCGA-67-3774       TCGA-67-6215 
"TRIM72 WILD-TYPE" "TRIM72 WILD-TYPE" "TRIM72 WILD-TYPE" "TRIM72 WILD-TYPE" 
      TCGA-67-6216       TCGA-67-6217       TCGA-71-6725       TCGA-73-4658 
"TRIM72 WILD-TYPE" "TRIM72 WILD-TYPE" "TRIM72 WILD-TYPE" "TRIM72 WILD-TYPE" 
      TCGA-73-4659       TCGA-73-4662       TCGA-73-4666       TCGA-73-4668 
"TRIM72 WILD-TYPE" "TRIM72 WILD-TYPE"   "TRIM72 MUTATED" "TRIM72 WILD-TYPE" 
      TCGA-73-4670       TCGA-73-4675       TCGA-73-4676       TCGA-73-4677 
"TRIM72 WILD-TYPE" "TRIM72 WILD-TYPE" "TRIM72 WILD-TYPE" "TRIM72 WILD-TYPE" 
      TCGA-91-6828       TCGA-91-6829       TCGA-91-6831       TCGA-91-6835 
"TRIM72 WILD-TYPE" "TRIM72 WILD-TYPE" "TRIM72 WILD-TYPE" "TRIM72 WILD-TYPE" 
      TCGA-91-6836 
"TRIM72 WILD-TYPE" 
      TCGA-05-4249       TCGA-05-4250       TCGA-05-4382       TCGA-05-4384 
"TRIM72 WILD-TYPE" "TRIM72 WILD-TYPE" "TRIM72 WILD-TYPE" "TRIM72 WILD-TYPE" 
      TCGA-05-4390       TCGA-05-4396       TCGA-05-4397       TCGA-05-4398 
  "TRIM72 MUTATED" "TRIM72 WILD-TYPE" "TRIM72 WILD-TYPE" "TRIM72 WILD-TYPE" 
      TCGA-05-4402       TCGA-05-4405       TCGA-05-4415       TCGA-05-4417 
"TRIM72 WILD-TYPE" "TRIM72 WILD-TYPE" "TRIM72 WILD-TYPE" "TRIM72 WILD-TYPE" 
      TCGA-05-4418       TCGA-05-4420       TCGA-05-4424       TCGA-05-4426 
"TRIM72 WILD-TYPE" "TRIM72 WILD-TYPE" "TRIM72 WILD-TYPE" "TRIM72 WILD-TYPE" 
      TCGA-05-4427       TCGA-05-4430       TCGA-05-4432       TCGA-05-4433 
"TRIM72 WILD-TYPE" "TRIM72 WILD-TYPE" "TRIM72 WILD-TYPE" "TRIM72 WILD-TYPE" 
      TCGA-05-4434       TCGA-05-5420       TCGA-05-5423       TCGA-05-5425 
"TRIM72 WILD-TYPE" "TRIM72 WILD-TYPE" "TRIM72 WILD-TYPE" "TRIM72 WILD-TYPE" 
      TCGA-05-5429       TCGA-05-5715       TCGA-35-3615       TCGA-35-4122 
"TRIM72 WILD-TYPE" "TRIM72 WILD-TYPE" "TRIM72 WILD-TYPE" "TRIM72 WILD-TYPE" 
      TCGA-35-4123       TCGA-35-5375       TCGA-38-4625       TCGA-38-4626 
"TRIM72 WILD-TYPE" "TRIM72 WILD-TYPE" "TRIM72 WILD-TYPE" "TRIM72 WILD-TYPE" 
      TCGA-38-4627       TCGA-38-4628       TCGA-38-4629       TCGA-38-4630 
"TRIM72 WILD-TYPE" "TRIM72 WILD-TYPE" "TRIM72 WILD-TYPE" "TRIM72 WILD-TYPE" 
      TCGA-38-4631       TCGA-38-4632       TCGA-38-6178       TCGA-44-2655 
"TRIM72 WILD-TYPE" "TRIM72 WILD-TYPE"   "TRIM72 MUTATED" "TRIM72 WILD-TYPE" 
      TCGA-44-2656       TCGA-44-2657       TCGA-44-2659       TCGA-44-2661 
"TRIM72 WILD-TYPE" "TRIM72 WILD-TYPE" "TRIM72 WILD-TYPE" "TRIM72 WILD-TYPE" 
      TCGA-44-2662       TCGA-44-2665       TCGA-44-2666       TCGA-44-2668 
"TRIM72 WILD-TYPE" "TRIM72 WILD-TYPE" "TRIM72 WILD-TYPE" "TRIM72 WILD-TYPE" 
      TCGA-44-3396       TCGA-44-3398       TCGA-44-3918       TCGA-44-3919 
"TRIM72 WILD-TYPE" "TRIM72 WILD-TYPE" "TRIM72 WILD-TYPE" "TRIM72 WILD-TYPE" 
      TCGA-44-4112       TCGA-44-5643       TCGA-44-5645       TCGA-44-6144 
"TRIM72 WILD-TYPE" "TRIM72 WILD-TYPE" "TRIM72 WILD-TYPE" "TRIM72 WILD-TYPE" 
      TCGA-44-6145       TCGA-44-6146       TCGA-44-6147       TCGA-44-6148 
"TRIM72 WILD-TYPE" "TRIM72 WILD-TYPE" "TRIM72 WILD-TYPE" "TRIM72 WILD-TYPE" 
      TCGA-44-6774       TCGA-44-6775       TCGA-44-6776       TCGA-44-6777 
"TRIM72 WILD-TYPE" "TRIM72 WILD-TYPE" "TRIM72 WILD-TYPE" "TRIM72 WILD-TYPE" 
      TCGA-44-6778       TCGA-44-6779       TCGA-49-4486       TCGA-49-4487 
"TRIM72 WILD-TYPE" "TRIM72 WILD-TYPE" "TRIM72 WILD-TYPE" "TRIM72 WILD-TYPE" 
      TCGA-49-4488       TCGA-49-4490       TCGA-49-4494       TCGA-49-4501 
"TRIM72 WILD-TYPE" "TRIM72 WILD-TYPE" "TRIM72 WILD-TYPE" "TRIM72 WILD-TYPE" 
      TCGA-49-4505       TCGA-49-4506       TCGA-49-4507       TCGA-49-4510 
"TRIM72 WILD-TYPE" "TRIM72 WILD-TYPE" "TRIM72 WILD-TYPE" "TRIM72 WILD-TYPE" 
      TCGA-49-4512       TCGA-49-4514       TCGA-49-6742       TCGA-49-6743 
"TRIM72 WILD-TYPE" "TRIM72 WILD-TYPE" "TRIM72 WILD-TYPE" "TRIM72 WILD-TYPE" 
      TCGA-49-6744       TCGA-49-6745       TCGA-50-5044       TCGA-50-5045 
"TRIM72 WILD-TYPE" "TRIM72 WILD-TYPE" "TRIM72 WILD-TYPE"   "TRIM72 MUTATED" 
      TCGA-50-5049       TCGA-50-5051       TCGA-50-5055       TCGA-50-5066 
"TRIM72 WILD-TYPE" "TRIM72 WILD-TYPE" "TRIM72 WILD-TYPE" "TRIM72 WILD-TYPE" 
      TCGA-50-5068       TCGA-50-5072       TCGA-50-5930       TCGA-50-5931 
"TRIM72 WILD-TYPE" "TRIM72 WILD-TYPE" "TRIM72 WILD-TYPE" "TRIM72 WILD-TYPE" 
      TCGA-50-5932       TCGA-50-5933       TCGA-50-5935       TCGA-50-5936 
"TRIM72 WILD-TYPE"   "TRIM72 MUTATED" "TRIM72 WILD-TYPE" "TRIM72 WILD-TYPE" 
      TCGA-50-5939       TCGA-50-5941       TCGA-50-5942       TCGA-50-5944 
"TRIM72 WILD-TYPE" "TRIM72 WILD-TYPE" "TRIM72 WILD-TYPE" "TRIM72 WILD-TYPE" 
      TCGA-50-5946       TCGA-50-6590       TCGA-50-6591       TCGA-50-6592 
"TRIM72 WILD-TYPE" "TRIM72 WILD-TYPE" "TRIM72 WILD-TYPE" "TRIM72 WILD-TYPE" 
      TCGA-50-6593       TCGA-50-6594       TCGA-50-6595       TCGA-50-6597 
"TRIM72 WILD-TYPE" "TRIM72 WILD-TYPE" "TRIM72 WILD-TYPE" "TRIM72 WILD-TYPE" 
      TCGA-55-1592       TCGA-55-1594       TCGA-55-1595       TCGA-55-1596 
"TRIM72 WILD-TYPE" "TRIM72 WILD-TYPE" "TRIM72 WILD-TYPE" "TRIM72 WILD-TYPE" 
      TCGA-55-5899       TCGA-55-6543       TCGA-55-6642       TCGA-55-6712 
"TRIM72 WILD-TYPE" "TRIM72 WILD-TYPE" "TRIM72 WILD-TYPE" "TRIM72 WILD-TYPE" 
      TCGA-64-1676       TCGA-64-1677       TCGA-64-1678       TCGA-64-1680 
"TRIM72 WILD-TYPE" "TRIM72 WILD-TYPE" "TRIM72 WILD-TYPE" "TRIM72 WILD-TYPE" 
      TCGA-64-5774       TCGA-64-5775       TCGA-64-5778       TCGA-64-5779 
"TRIM72 WILD-TYPE" "TRIM72 WILD-TYPE" "TRIM72 WILD-TYPE" "TRIM72 WILD-TYPE" 
      TCGA-64-5781       TCGA-64-5815       TCGA-67-3770       TCGA-67-3771 
"TRIM72 WILD-TYPE"   "TRIM72 MUTATED" "TRIM72 WILD-TYPE" "TRIM72 WILD-TYPE" 
      TCGA-67-3772       TCGA-67-3773       TCGA-67-3774       TCGA-67-6215 
"TRIM72 WILD-TYPE" "TRIM72 WILD-TYPE" "TRIM72 WILD-TYPE" "TRIM72 WILD-TYPE" 
      TCGA-67-6216       TCGA-67-6217       TCGA-71-6725       TCGA-73-4658 
"TRIM72 WILD-TYPE" "TRIM72 WILD-TYPE" "TRIM72 WILD-TYPE" "TRIM72 WILD-TYPE" 
      TCGA-73-4659       TCGA-73-4662       TCGA-73-4666       TCGA-73-4668 
"TRIM72 WILD-TYPE" "TRIM72 WILD-TYPE"   "TRIM72 MUTATED" "TRIM72 WILD-TYPE" 
      TCGA-73-4670       TCGA-73-4675       TCGA-73-4676       TCGA-73-4677 
"TRIM72 WILD-TYPE" "TRIM72 WILD-TYPE" "TRIM72 WILD-TYPE" "TRIM72 WILD-TYPE" 
      TCGA-91-6828       TCGA-91-6829       TCGA-91-6831       TCGA-91-6835 
"TRIM72 WILD-TYPE" "TRIM72 WILD-TYPE" "TRIM72 WILD-TYPE" "TRIM72 WILD-TYPE" 
      TCGA-91-6836 
"TRIM72 WILD-TYPE" 
[1] "hr=" "2.5"
D271V2, continuous
D271V3, binary
[1] "tbl2"
                  cls
clus               [,1] [,2]
  TRIM72 MUTATED      4    2
  TRIM72 WILD-TYPE   89   77
        clus
vv       TRIM72 MUTATED TRIM72 WILD-TYPE
  FEMALE              4               89
  MALE                2               77
D271V4, continuous
[1] "Remove cluster labels:" "TRIM72 MUTATED"        
clus
  TRIM72 MUTATED TRIM72 WILD-TYPE 
               1               11 
      TCGA-35-4122       TCGA-35-4123       TCGA-35-5375       TCGA-64-1677 
"TRIM72 WILD-TYPE" "TRIM72 WILD-TYPE" "TRIM72 WILD-TYPE" "TRIM72 WILD-TYPE" 
      TCGA-64-5778       TCGA-71-6725       TCGA-73-4659       TCGA-73-4662 
"TRIM72 WILD-TYPE" "TRIM72 WILD-TYPE" "TRIM72 WILD-TYPE" "TRIM72 WILD-TYPE" 
      TCGA-73-4668       TCGA-73-4676       TCGA-75-5122 
"TRIM72 WILD-TYPE" "TRIM72 WILD-TYPE" "TRIM72 WILD-TYPE" 
D271V5, multiclass
D271V6, multiclass
    clus
vv   TRIM72 MUTATED TRIM72 WILD-TYPE
  T1              1               40
  T2              4              104
  T3              0               14
  T4              1                7
D271V7, multiclass
       clus
vv      TRIM72 MUTATED TRIM72 WILD-TYPE
  N0                 2               93
  N1                 2               35
  N2+N3              2               33
D271V8, multiclass
    clus
vv   TRIM72 MUTATED TRIM72 WILD-TYPE
  M0              4              133
  M1              1                8
  MX              0               22
D271V9, multiclass
     clus
vv    TRIM72 MUTATED TRIM72 WILD-TYPE
  I                2               86
  II               1               32
  III              2               37
  IV               1                8
D271V10, binary
[1] "tbl2"
                  cls
clus               [,1] [,2]
  TRIM72 MUTATED      3    3
  TRIM72 WILD-TYPE   13  153
     clus
vv    TRIM72 MUTATED TRIM72 WILD-TYPE
  NO               3               13
  YES              3              153
D271V11, continuous
D271V12, continuous
D271V13, multiclass
                                             clus
vv                                            TRIM72 MUTATED TRIM72 WILD-TYPE
  CURRENT REFORMED SMOKER FOR < OR = 15 YEARS              2               60
  CURRENT REFORMED SMOKER FOR > 15 YEARS                   1               45
  CURRENT SMOKER                                           0               28
  LIFELONG NON-SMOKER                                      1               23
D271V14, continuous
[1] "Remove cluster labels:" "TRIM72 MUTATED"        
clus
  TRIM72 MUTATED TRIM72 WILD-TYPE 
               2               66 
      TCGA-05-4384       TCGA-05-4396       TCGA-05-4405       TCGA-05-4410 
"TRIM72 WILD-TYPE" "TRIM72 WILD-TYPE" "TRIM72 WILD-TYPE" "TRIM72 WILD-TYPE" 
      TCGA-05-4415       TCGA-05-4417       TCGA-05-4424       TCGA-05-4427 
"TRIM72 WILD-TYPE" "TRIM72 WILD-TYPE" "TRIM72 WILD-TYPE" "TRIM72 WILD-TYPE" 
      TCGA-05-4433       TCGA-05-5420       TCGA-05-5423       TCGA-05-5425 
"TRIM72 WILD-TYPE" "TRIM72 WILD-TYPE" "TRIM72 WILD-TYPE" "TRIM72 WILD-TYPE" 
      TCGA-05-5428       TCGA-35-4122       TCGA-35-4123       TCGA-35-5375 
"TRIM72 WILD-TYPE" "TRIM72 WILD-TYPE" "TRIM72 WILD-TYPE" "TRIM72 WILD-TYPE" 
      TCGA-38-4625       TCGA-38-4626       TCGA-44-2655       TCGA-44-2656 
"TRIM72 WILD-TYPE" "TRIM72 WILD-TYPE" "TRIM72 WILD-TYPE" "TRIM72 WILD-TYPE" 
      TCGA-44-2657       TCGA-44-2659       TCGA-44-2662       TCGA-44-2666 
"TRIM72 WILD-TYPE" "TRIM72 WILD-TYPE" "TRIM72 WILD-TYPE" "TRIM72 WILD-TYPE" 
      TCGA-44-2668       TCGA-44-3396       TCGA-44-3398       TCGA-44-3918 
"TRIM72 WILD-TYPE" "TRIM72 WILD-TYPE" "TRIM72 WILD-TYPE" "TRIM72 WILD-TYPE" 
      TCGA-44-4112       TCGA-44-5645       TCGA-44-6144       TCGA-44-6145 
"TRIM72 WILD-TYPE" "TRIM72 WILD-TYPE" "TRIM72 WILD-TYPE" "TRIM72 WILD-TYPE" 
      TCGA-44-6147       TCGA-44-6148       TCGA-44-6774       TCGA-44-6775 
"TRIM72 WILD-TYPE" "TRIM72 WILD-TYPE" "TRIM72 WILD-TYPE" "TRIM72 WILD-TYPE" 
      TCGA-44-6776       TCGA-44-6777       TCGA-44-6778       TCGA-44-6779 
"TRIM72 WILD-TYPE" "TRIM72 WILD-TYPE" "TRIM72 WILD-TYPE" "TRIM72 WILD-TYPE" 
      TCGA-49-4486       TCGA-49-4494       TCGA-49-4505       TCGA-55-1592 
"TRIM72 WILD-TYPE" "TRIM72 WILD-TYPE" "TRIM72 WILD-TYPE" "TRIM72 WILD-TYPE" 
      TCGA-55-1594       TCGA-55-1595       TCGA-55-1596       TCGA-55-5899 
"TRIM72 WILD-TYPE" "TRIM72 WILD-TYPE" "TRIM72 WILD-TYPE" "TRIM72 WILD-TYPE" 
      TCGA-55-6642       TCGA-55-6712       TCGA-64-1677       TCGA-64-1678 
"TRIM72 WILD-TYPE" "TRIM72 WILD-TYPE" "TRIM72 WILD-TYPE" "TRIM72 WILD-TYPE" 
      TCGA-64-1680       TCGA-64-5774       TCGA-64-5775       TCGA-64-5778 
"TRIM72 WILD-TYPE" "TRIM72 WILD-TYPE" "TRIM72 WILD-TYPE" "TRIM72 WILD-TYPE" 
      TCGA-64-5779       TCGA-64-5781       TCGA-73-4659       TCGA-73-4662 
"TRIM72 WILD-TYPE" "TRIM72 WILD-TYPE" "TRIM72 WILD-TYPE" "TRIM72 WILD-TYPE" 
      TCGA-73-4668       TCGA-73-4670       TCGA-73-4675       TCGA-73-4676 
"TRIM72 WILD-TYPE" "TRIM72 WILD-TYPE" "TRIM72 WILD-TYPE" "TRIM72 WILD-TYPE" 
      TCGA-91-6829       TCGA-91-6836 
"TRIM72 WILD-TYPE" "TRIM72 WILD-TYPE" 

Clustering(272) Variable = KRTAP26-1 MUTATION ANALYSIS
D272V1, survival
                     sevent
clus2                  0  1
  KRTAP26-1 MUTATED    2  1
  KRTAP26-1 WILD-TYPE 97 49
  KRTAP26-1 MUTATED KRTAP26-1 WILD-TYPE 
                  3                 146 
  KRTAP26-1 MUTATED KRTAP26-1 WILD-TYPE 
                  1                  49 
$`KRTAP26-1 MUTATED`
TCGA-38-4626 TCGA-38-4631 TCGA-44-2656 
       85.32        11.64        19.10 

$`KRTAP26-1 WILD-TYPE`
TCGA-05-4249 TCGA-05-4250 TCGA-05-4382 TCGA-05-4384 TCGA-05-4390 TCGA-05-4396 
       38.07         3.98        19.92        14.01        37.02         9.96 
TCGA-05-4397 TCGA-05-4398 TCGA-05-4402 TCGA-05-4405 TCGA-05-4415 TCGA-05-4417 
       24.03        47.05         8.02        20.05         2.96        14.93 
TCGA-05-4418 TCGA-05-4420 TCGA-05-4424 TCGA-05-4426 TCGA-05-4427 TCGA-05-4430 
        8.98        29.95        30.02        26.01        26.01        25.02 
TCGA-05-4432 TCGA-05-4433 TCGA-05-4434 TCGA-05-5420 TCGA-05-5423 TCGA-05-5425 
       25.02        24.00        15.02         1.02         4.96         2.96 
TCGA-05-5429 TCGA-05-5715 TCGA-35-3615 TCGA-35-4122 TCGA-35-4123 TCGA-35-5375 
        0.99         2.04         0.46         7.36         5.95         8.68 
TCGA-38-4625 TCGA-38-4627 TCGA-38-4628 TCGA-38-4629 TCGA-38-4630 TCGA-38-4632 
       47.61        37.71        49.02        28.37        35.28        44.61 
TCGA-38-6178 TCGA-44-2655 TCGA-44-2657 TCGA-44-2659 TCGA-44-2661 TCGA-44-2662 
        5.19        18.87        13.15        17.39         3.39        15.78 
TCGA-44-2665 TCGA-44-2666 TCGA-44-2668 TCGA-44-3396 TCGA-44-3398 TCGA-44-3918 
       13.15         3.19         8.09        10.22         8.32         6.44 
TCGA-44-3919 TCGA-44-4112 TCGA-44-5643 TCGA-44-5645 TCGA-44-6144 TCGA-44-6145 
        6.21         4.60         3.48         6.84         0.30         3.35 
TCGA-44-6146 TCGA-44-6147 TCGA-44-6148 TCGA-44-6774 TCGA-44-6775 TCGA-44-6776 
        9.93         7.76         3.12         5.42         2.70        63.72 
TCGA-44-6777 TCGA-44-6778 TCGA-44-6779 TCGA-49-4486 TCGA-49-4487 TCGA-49-4488 
       32.45        36.49        16.41        76.21        28.11        28.57 
TCGA-49-4490 TCGA-49-4494 TCGA-49-4501 TCGA-49-4505 TCGA-49-4506 TCGA-49-4507 
       12.66        35.54        46.72        14.07        32.84         8.81 
TCGA-49-4510 TCGA-49-4512 TCGA-49-4514 TCGA-49-6742 TCGA-49-6743 TCGA-49-6744 
       29.46        29.75        43.20        15.02        12.13        12.99 
TCGA-49-6745 TCGA-50-5044 TCGA-50-5045 TCGA-50-5049 TCGA-50-5051 TCGA-50-5055 
        4.93        20.48        71.47        48.82        14.96        25.81 
TCGA-50-5066 TCGA-50-5068 TCGA-50-5072 TCGA-50-5930 TCGA-50-5931 TCGA-50-5932 
        9.76        49.28         8.05         9.27         8.78        35.87 
TCGA-50-5933 TCGA-50-5935 TCGA-50-5936 TCGA-50-5939 TCGA-50-5941 TCGA-50-5942 
       77.88        21.47         8.45        15.12         9.37         4.44 
TCGA-50-5944 TCGA-50-5946 TCGA-50-6590 TCGA-50-6591 TCGA-50-6592 TCGA-50-6593 
       12.26        11.47        42.31         3.88        25.51        11.05 
TCGA-50-6594 TCGA-50-6595 TCGA-50-6597 TCGA-55-1592 TCGA-55-1594 TCGA-55-1595 
       12.16         6.21        33.37        23.05        38.73        48.62 
TCGA-55-1596 TCGA-55-5899 TCGA-55-6543 TCGA-55-6642 TCGA-55-6712 TCGA-64-1676 
       45.17         2.86         0.07        32.61         0.79        56.81 
TCGA-64-1677 TCGA-64-1678 TCGA-64-1680 TCGA-64-5774 TCGA-64-5775 TCGA-64-5778 
       20.65        39.09        37.02        83.84         0.10        30.44 
TCGA-64-5779 TCGA-64-5781 TCGA-64-5815 TCGA-67-3770 TCGA-67-3771 TCGA-67-3772 
       16.67        39.52         7.33         0.99         1.97         0.59 
TCGA-67-3773 TCGA-67-3774 TCGA-67-6215 TCGA-67-6216 TCGA-67-6217 TCGA-71-6725 
        2.04         0.59         0.89         0.69        13.87         2.01 
TCGA-73-4658 TCGA-73-4659 TCGA-73-4662 TCGA-73-4666 TCGA-73-4668 TCGA-73-4670 
       52.57        23.38        29.95        20.28        15.35         0.46 
TCGA-73-4675 TCGA-73-4676 TCGA-73-4677 TCGA-91-6828 TCGA-91-6829 TCGA-91-6831 
        1.32         4.01         1.25         1.22        41.33         1.28 
TCGA-91-6835 TCGA-91-6836 
        1.15         0.36 

  KRTAP26-1 MUTATED KRTAP26-1 WILD-TYPE 
              11.64                0.07 
  KRTAP26-1 MUTATED KRTAP26-1 WILD-TYPE 
              85.32               83.84 
  KRTAP26-1 MUTATED KRTAP26-1 WILD-TYPE 
              19.10               13.51 
[1] "11.6 - 85.3 (19.1)" "0.1 - 83.8 (13.5)" 
         TCGA-05-4249          TCGA-05-4250          TCGA-05-4382 
"KRTAP26-1 WILD-TYPE" "KRTAP26-1 WILD-TYPE" "KRTAP26-1 WILD-TYPE" 
         TCGA-05-4384          TCGA-05-4390          TCGA-05-4396 
"KRTAP26-1 WILD-TYPE" "KRTAP26-1 WILD-TYPE" "KRTAP26-1 WILD-TYPE" 
         TCGA-05-4397          TCGA-05-4398          TCGA-05-4402 
"KRTAP26-1 WILD-TYPE" "KRTAP26-1 WILD-TYPE" "KRTAP26-1 WILD-TYPE" 
         TCGA-05-4405          TCGA-05-4415          TCGA-05-4417 
"KRTAP26-1 WILD-TYPE" "KRTAP26-1 WILD-TYPE" "KRTAP26-1 WILD-TYPE" 
         TCGA-05-4418          TCGA-05-4420          TCGA-05-4424 
"KRTAP26-1 WILD-TYPE" "KRTAP26-1 WILD-TYPE" "KRTAP26-1 WILD-TYPE" 
         TCGA-05-4426          TCGA-05-4427          TCGA-05-4430 
"KRTAP26-1 WILD-TYPE" "KRTAP26-1 WILD-TYPE" "KRTAP26-1 WILD-TYPE" 
         TCGA-05-4432          TCGA-05-4433          TCGA-05-4434 
"KRTAP26-1 WILD-TYPE" "KRTAP26-1 WILD-TYPE" "KRTAP26-1 WILD-TYPE" 
         TCGA-05-5420          TCGA-05-5423          TCGA-05-5425 
"KRTAP26-1 WILD-TYPE" "KRTAP26-1 WILD-TYPE" "KRTAP26-1 WILD-TYPE" 
         TCGA-05-5429          TCGA-05-5715          TCGA-35-3615 
"KRTAP26-1 WILD-TYPE" "KRTAP26-1 WILD-TYPE" "KRTAP26-1 WILD-TYPE" 
         TCGA-35-4122          TCGA-35-4123          TCGA-35-5375 
"KRTAP26-1 WILD-TYPE" "KRTAP26-1 WILD-TYPE" "KRTAP26-1 WILD-TYPE" 
         TCGA-38-4625          TCGA-38-4626          TCGA-38-4627 
"KRTAP26-1 WILD-TYPE"   "KRTAP26-1 MUTATED" "KRTAP26-1 WILD-TYPE" 
         TCGA-38-4628          TCGA-38-4629          TCGA-38-4630 
"KRTAP26-1 WILD-TYPE" "KRTAP26-1 WILD-TYPE" "KRTAP26-1 WILD-TYPE" 
         TCGA-38-4631          TCGA-38-4632          TCGA-38-6178 
  "KRTAP26-1 MUTATED" "KRTAP26-1 WILD-TYPE" "KRTAP26-1 WILD-TYPE" 
         TCGA-44-2655          TCGA-44-2656          TCGA-44-2657 
"KRTAP26-1 WILD-TYPE"   "KRTAP26-1 MUTATED" "KRTAP26-1 WILD-TYPE" 
         TCGA-44-2659          TCGA-44-2661          TCGA-44-2662 
"KRTAP26-1 WILD-TYPE" "KRTAP26-1 WILD-TYPE" "KRTAP26-1 WILD-TYPE" 
         TCGA-44-2665          TCGA-44-2666          TCGA-44-2668 
"KRTAP26-1 WILD-TYPE" "KRTAP26-1 WILD-TYPE" "KRTAP26-1 WILD-TYPE" 
         TCGA-44-3396          TCGA-44-3398          TCGA-44-3918 
"KRTAP26-1 WILD-TYPE" "KRTAP26-1 WILD-TYPE" "KRTAP26-1 WILD-TYPE" 
         TCGA-44-3919          TCGA-44-4112          TCGA-44-5643 
"KRTAP26-1 WILD-TYPE" "KRTAP26-1 WILD-TYPE" "KRTAP26-1 WILD-TYPE" 
         TCGA-44-5645          TCGA-44-6144          TCGA-44-6145 
"KRTAP26-1 WILD-TYPE" "KRTAP26-1 WILD-TYPE" "KRTAP26-1 WILD-TYPE" 
         TCGA-44-6146          TCGA-44-6147          TCGA-44-6148 
"KRTAP26-1 WILD-TYPE" "KRTAP26-1 WILD-TYPE" "KRTAP26-1 WILD-TYPE" 
         TCGA-44-6774          TCGA-44-6775          TCGA-44-6776 
"KRTAP26-1 WILD-TYPE" "KRTAP26-1 WILD-TYPE" "KRTAP26-1 WILD-TYPE" 
         TCGA-44-6777          TCGA-44-6778          TCGA-44-6779 
"KRTAP26-1 WILD-TYPE" "KRTAP26-1 WILD-TYPE" "KRTAP26-1 WILD-TYPE" 
         TCGA-49-4486          TCGA-49-4487          TCGA-49-4488 
"KRTAP26-1 WILD-TYPE" "KRTAP26-1 WILD-TYPE" "KRTAP26-1 WILD-TYPE" 
         TCGA-49-4490          TCGA-49-4494          TCGA-49-4501 
"KRTAP26-1 WILD-TYPE" "KRTAP26-1 WILD-TYPE" "KRTAP26-1 WILD-TYPE" 
         TCGA-49-4505          TCGA-49-4506          TCGA-49-4507 
"KRTAP26-1 WILD-TYPE" "KRTAP26-1 WILD-TYPE" "KRTAP26-1 WILD-TYPE" 
         TCGA-49-4510          TCGA-49-4512          TCGA-49-4514 
"KRTAP26-1 WILD-TYPE" "KRTAP26-1 WILD-TYPE" "KRTAP26-1 WILD-TYPE" 
         TCGA-49-6742          TCGA-49-6743          TCGA-49-6744 
"KRTAP26-1 WILD-TYPE" "KRTAP26-1 WILD-TYPE" "KRTAP26-1 WILD-TYPE" 
         TCGA-49-6745          TCGA-50-5044          TCGA-50-5045 
"KRTAP26-1 WILD-TYPE" "KRTAP26-1 WILD-TYPE" "KRTAP26-1 WILD-TYPE" 
         TCGA-50-5049          TCGA-50-5051          TCGA-50-5055 
"KRTAP26-1 WILD-TYPE" "KRTAP26-1 WILD-TYPE" "KRTAP26-1 WILD-TYPE" 
         TCGA-50-5066          TCGA-50-5068          TCGA-50-5072 
"KRTAP26-1 WILD-TYPE" "KRTAP26-1 WILD-TYPE" "KRTAP26-1 WILD-TYPE" 
         TCGA-50-5930          TCGA-50-5931          TCGA-50-5932 
"KRTAP26-1 WILD-TYPE" "KRTAP26-1 WILD-TYPE" "KRTAP26-1 WILD-TYPE" 
         TCGA-50-5933          TCGA-50-5935          TCGA-50-5936 
"KRTAP26-1 WILD-TYPE" "KRTAP26-1 WILD-TYPE" "KRTAP26-1 WILD-TYPE" 
         TCGA-50-5939          TCGA-50-5941          TCGA-50-5942 
"KRTAP26-1 WILD-TYPE" "KRTAP26-1 WILD-TYPE" "KRTAP26-1 WILD-TYPE" 
         TCGA-50-5944          TCGA-50-5946          TCGA-50-6590 
"KRTAP26-1 WILD-TYPE" "KRTAP26-1 WILD-TYPE" "KRTAP26-1 WILD-TYPE" 
         TCGA-50-6591          TCGA-50-6592          TCGA-50-6593 
"KRTAP26-1 WILD-TYPE" "KRTAP26-1 WILD-TYPE" "KRTAP26-1 WILD-TYPE" 
         TCGA-50-6594          TCGA-50-6595          TCGA-50-6597 
"KRTAP26-1 WILD-TYPE" "KRTAP26-1 WILD-TYPE" "KRTAP26-1 WILD-TYPE" 
         TCGA-55-1592          TCGA-55-1594          TCGA-55-1595 
"KRTAP26-1 WILD-TYPE" "KRTAP26-1 WILD-TYPE" "KRTAP26-1 WILD-TYPE" 
         TCGA-55-1596          TCGA-55-5899          TCGA-55-6543 
"KRTAP26-1 WILD-TYPE" "KRTAP26-1 WILD-TYPE" "KRTAP26-1 WILD-TYPE" 
         TCGA-55-6642          TCGA-55-6712          TCGA-64-1676 
"KRTAP26-1 WILD-TYPE" "KRTAP26-1 WILD-TYPE" "KRTAP26-1 WILD-TYPE" 
         TCGA-64-1677          TCGA-64-1678          TCGA-64-1680 
"KRTAP26-1 WILD-TYPE" "KRTAP26-1 WILD-TYPE" "KRTAP26-1 WILD-TYPE" 
         TCGA-64-5774          TCGA-64-5775          TCGA-64-5778 
"KRTAP26-1 WILD-TYPE" "KRTAP26-1 WILD-TYPE" "KRTAP26-1 WILD-TYPE" 
         TCGA-64-5779          TCGA-64-5781          TCGA-64-5815 
"KRTAP26-1 WILD-TYPE" "KRTAP26-1 WILD-TYPE" "KRTAP26-1 WILD-TYPE" 
         TCGA-67-3770          TCGA-67-3771          TCGA-67-3772 
"KRTAP26-1 WILD-TYPE" "KRTAP26-1 WILD-TYPE" "KRTAP26-1 WILD-TYPE" 
         TCGA-67-3773          TCGA-67-3774          TCGA-67-6215 
"KRTAP26-1 WILD-TYPE" "KRTAP26-1 WILD-TYPE" "KRTAP26-1 WILD-TYPE" 
         TCGA-67-6216          TCGA-67-6217          TCGA-71-6725 
"KRTAP26-1 WILD-TYPE" "KRTAP26-1 WILD-TYPE" "KRTAP26-1 WILD-TYPE" 
         TCGA-73-4658          TCGA-73-4659          TCGA-73-4662 
"KRTAP26-1 WILD-TYPE" "KRTAP26-1 WILD-TYPE" "KRTAP26-1 WILD-TYPE" 
         TCGA-73-4666          TCGA-73-4668          TCGA-73-4670 
"KRTAP26-1 WILD-TYPE" "KRTAP26-1 WILD-TYPE" "KRTAP26-1 WILD-TYPE" 
         TCGA-73-4675          TCGA-73-4676          TCGA-73-4677 
"KRTAP26-1 WILD-TYPE" "KRTAP26-1 WILD-TYPE" "KRTAP26-1 WILD-TYPE" 
         TCGA-91-6828          TCGA-91-6829          TCGA-91-6831 
"KRTAP26-1 WILD-TYPE" "KRTAP26-1 WILD-TYPE" "KRTAP26-1 WILD-TYPE" 
         TCGA-91-6835          TCGA-91-6836 
"KRTAP26-1 WILD-TYPE" "KRTAP26-1 WILD-TYPE" 
         TCGA-05-4249          TCGA-05-4250          TCGA-05-4382 
"KRTAP26-1 WILD-TYPE" "KRTAP26-1 WILD-TYPE" "KRTAP26-1 WILD-TYPE" 
         TCGA-05-4384          TCGA-05-4390          TCGA-05-4396 
"KRTAP26-1 WILD-TYPE" "KRTAP26-1 WILD-TYPE" "KRTAP26-1 WILD-TYPE" 
         TCGA-05-4397          TCGA-05-4398          TCGA-05-4402 
"KRTAP26-1 WILD-TYPE" "KRTAP26-1 WILD-TYPE" "KRTAP26-1 WILD-TYPE" 
         TCGA-05-4405          TCGA-05-4415          TCGA-05-4417 
"KRTAP26-1 WILD-TYPE" "KRTAP26-1 WILD-TYPE" "KRTAP26-1 WILD-TYPE" 
         TCGA-05-4418          TCGA-05-4420          TCGA-05-4424 
"KRTAP26-1 WILD-TYPE" "KRTAP26-1 WILD-TYPE" "KRTAP26-1 WILD-TYPE" 
         TCGA-05-4426          TCGA-05-4427          TCGA-05-4430 
"KRTAP26-1 WILD-TYPE" "KRTAP26-1 WILD-TYPE" "KRTAP26-1 WILD-TYPE" 
         TCGA-05-4432          TCGA-05-4433          TCGA-05-4434 
"KRTAP26-1 WILD-TYPE" "KRTAP26-1 WILD-TYPE" "KRTAP26-1 WILD-TYPE" 
         TCGA-05-5420          TCGA-05-5423          TCGA-05-5425 
"KRTAP26-1 WILD-TYPE" "KRTAP26-1 WILD-TYPE" "KRTAP26-1 WILD-TYPE" 
         TCGA-05-5429          TCGA-05-5715          TCGA-35-3615 
"KRTAP26-1 WILD-TYPE" "KRTAP26-1 WILD-TYPE" "KRTAP26-1 WILD-TYPE" 
         TCGA-35-4122          TCGA-35-4123          TCGA-35-5375 
"KRTAP26-1 WILD-TYPE" "KRTAP26-1 WILD-TYPE" "KRTAP26-1 WILD-TYPE" 
         TCGA-38-4625          TCGA-38-4626          TCGA-38-4627 
"KRTAP26-1 WILD-TYPE"   "KRTAP26-1 MUTATED" "KRTAP26-1 WILD-TYPE" 
         TCGA-38-4628          TCGA-38-4629          TCGA-38-4630 
"KRTAP26-1 WILD-TYPE" "KRTAP26-1 WILD-TYPE" "KRTAP26-1 WILD-TYPE" 
         TCGA-38-4631          TCGA-38-4632          TCGA-38-6178 
  "KRTAP26-1 MUTATED" "KRTAP26-1 WILD-TYPE" "KRTAP26-1 WILD-TYPE" 
         TCGA-44-2655          TCGA-44-2656          TCGA-44-2657 
"KRTAP26-1 WILD-TYPE"   "KRTAP26-1 MUTATED" "KRTAP26-1 WILD-TYPE" 
         TCGA-44-2659          TCGA-44-2661          TCGA-44-2662 
"KRTAP26-1 WILD-TYPE" "KRTAP26-1 WILD-TYPE" "KRTAP26-1 WILD-TYPE" 
         TCGA-44-2665          TCGA-44-2666          TCGA-44-2668 
"KRTAP26-1 WILD-TYPE" "KRTAP26-1 WILD-TYPE" "KRTAP26-1 WILD-TYPE" 
         TCGA-44-3396          TCGA-44-3398          TCGA-44-3918 
"KRTAP26-1 WILD-TYPE" "KRTAP26-1 WILD-TYPE" "KRTAP26-1 WILD-TYPE" 
         TCGA-44-3919          TCGA-44-4112          TCGA-44-5643 
"KRTAP26-1 WILD-TYPE" "KRTAP26-1 WILD-TYPE" "KRTAP26-1 WILD-TYPE" 
         TCGA-44-5645          TCGA-44-6144          TCGA-44-6145 
"KRTAP26-1 WILD-TYPE" "KRTAP26-1 WILD-TYPE" "KRTAP26-1 WILD-TYPE" 
         TCGA-44-6146          TCGA-44-6147          TCGA-44-6148 
"KRTAP26-1 WILD-TYPE" "KRTAP26-1 WILD-TYPE" "KRTAP26-1 WILD-TYPE" 
         TCGA-44-6774          TCGA-44-6775          TCGA-44-6776 
"KRTAP26-1 WILD-TYPE" "KRTAP26-1 WILD-TYPE" "KRTAP26-1 WILD-TYPE" 
         TCGA-44-6777          TCGA-44-6778          TCGA-44-6779 
"KRTAP26-1 WILD-TYPE" "KRTAP26-1 WILD-TYPE" "KRTAP26-1 WILD-TYPE" 
         TCGA-49-4486          TCGA-49-4487          TCGA-49-4488 
"KRTAP26-1 WILD-TYPE" "KRTAP26-1 WILD-TYPE" "KRTAP26-1 WILD-TYPE" 
         TCGA-49-4490          TCGA-49-4494          TCGA-49-4501 
"KRTAP26-1 WILD-TYPE" "KRTAP26-1 WILD-TYPE" "KRTAP26-1 WILD-TYPE" 
         TCGA-49-4505          TCGA-49-4506          TCGA-49-4507 
"KRTAP26-1 WILD-TYPE" "KRTAP26-1 WILD-TYPE" "KRTAP26-1 WILD-TYPE" 
         TCGA-49-4510          TCGA-49-4512          TCGA-49-4514 
"KRTAP26-1 WILD-TYPE" "KRTAP26-1 WILD-TYPE" "KRTAP26-1 WILD-TYPE" 
         TCGA-49-6742          TCGA-49-6743          TCGA-49-6744 
"KRTAP26-1 WILD-TYPE" "KRTAP26-1 WILD-TYPE" "KRTAP26-1 WILD-TYPE" 
         TCGA-49-6745          TCGA-50-5044          TCGA-50-5045 
"KRTAP26-1 WILD-TYPE" "KRTAP26-1 WILD-TYPE" "KRTAP26-1 WILD-TYPE" 
         TCGA-50-5049          TCGA-50-5051          TCGA-50-5055 
"KRTAP26-1 WILD-TYPE" "KRTAP26-1 WILD-TYPE" "KRTAP26-1 WILD-TYPE" 
         TCGA-50-5066          TCGA-50-5068          TCGA-50-5072 
"KRTAP26-1 WILD-TYPE" "KRTAP26-1 WILD-TYPE" "KRTAP26-1 WILD-TYPE" 
         TCGA-50-5930          TCGA-50-5931          TCGA-50-5932 
"KRTAP26-1 WILD-TYPE" "KRTAP26-1 WILD-TYPE" "KRTAP26-1 WILD-TYPE" 
         TCGA-50-5933          TCGA-50-5935          TCGA-50-5936 
"KRTAP26-1 WILD-TYPE" "KRTAP26-1 WILD-TYPE" "KRTAP26-1 WILD-TYPE" 
         TCGA-50-5939          TCGA-50-5941          TCGA-50-5942 
"KRTAP26-1 WILD-TYPE" "KRTAP26-1 WILD-TYPE" "KRTAP26-1 WILD-TYPE" 
         TCGA-50-5944          TCGA-50-5946          TCGA-50-6590 
"KRTAP26-1 WILD-TYPE" "KRTAP26-1 WILD-TYPE" "KRTAP26-1 WILD-TYPE" 
         TCGA-50-6591          TCGA-50-6592          TCGA-50-6593 
"KRTAP26-1 WILD-TYPE" "KRTAP26-1 WILD-TYPE" "KRTAP26-1 WILD-TYPE" 
         TCGA-50-6594          TCGA-50-6595          TCGA-50-6597 
"KRTAP26-1 WILD-TYPE" "KRTAP26-1 WILD-TYPE" "KRTAP26-1 WILD-TYPE" 
         TCGA-55-1592          TCGA-55-1594          TCGA-55-1595 
"KRTAP26-1 WILD-TYPE" "KRTAP26-1 WILD-TYPE" "KRTAP26-1 WILD-TYPE" 
         TCGA-55-1596          TCGA-55-5899          TCGA-55-6543 
"KRTAP26-1 WILD-TYPE" "KRTAP26-1 WILD-TYPE" "KRTAP26-1 WILD-TYPE" 
         TCGA-55-6642          TCGA-55-6712          TCGA-64-1676 
"KRTAP26-1 WILD-TYPE" "KRTAP26-1 WILD-TYPE" "KRTAP26-1 WILD-TYPE" 
         TCGA-64-1677          TCGA-64-1678          TCGA-64-1680 
"KRTAP26-1 WILD-TYPE" "KRTAP26-1 WILD-TYPE" "KRTAP26-1 WILD-TYPE" 
         TCGA-64-5774          TCGA-64-5775          TCGA-64-5778 
"KRTAP26-1 WILD-TYPE" "KRTAP26-1 WILD-TYPE" "KRTAP26-1 WILD-TYPE" 
         TCGA-64-5779          TCGA-64-5781          TCGA-64-5815 
"KRTAP26-1 WILD-TYPE" "KRTAP26-1 WILD-TYPE" "KRTAP26-1 WILD-TYPE" 
         TCGA-67-3770          TCGA-67-3771          TCGA-67-3772 
"KRTAP26-1 WILD-TYPE" "KRTAP26-1 WILD-TYPE" "KRTAP26-1 WILD-TYPE" 
         TCGA-67-3773          TCGA-67-3774          TCGA-67-6215 
"KRTAP26-1 WILD-TYPE" "KRTAP26-1 WILD-TYPE" "KRTAP26-1 WILD-TYPE" 
         TCGA-67-6216          TCGA-67-6217          TCGA-71-6725 
"KRTAP26-1 WILD-TYPE" "KRTAP26-1 WILD-TYPE" "KRTAP26-1 WILD-TYPE" 
         TCGA-73-4658          TCGA-73-4659          TCGA-73-4662 
"KRTAP26-1 WILD-TYPE" "KRTAP26-1 WILD-TYPE" "KRTAP26-1 WILD-TYPE" 
         TCGA-73-4666          TCGA-73-4668          TCGA-73-4670 
"KRTAP26-1 WILD-TYPE" "KRTAP26-1 WILD-TYPE" "KRTAP26-1 WILD-TYPE" 
         TCGA-73-4675          TCGA-73-4676          TCGA-73-4677 
"KRTAP26-1 WILD-TYPE" "KRTAP26-1 WILD-TYPE" "KRTAP26-1 WILD-TYPE" 
         TCGA-91-6828          TCGA-91-6829          TCGA-91-6831 
"KRTAP26-1 WILD-TYPE" "KRTAP26-1 WILD-TYPE" "KRTAP26-1 WILD-TYPE" 
         TCGA-91-6835          TCGA-91-6836 
"KRTAP26-1 WILD-TYPE" "KRTAP26-1 WILD-TYPE" 
         TCGA-05-4249          TCGA-05-4250          TCGA-05-4382 
"KRTAP26-1 WILD-TYPE" "KRTAP26-1 WILD-TYPE" "KRTAP26-1 WILD-TYPE" 
         TCGA-05-4384          TCGA-05-4390          TCGA-05-4396 
"KRTAP26-1 WILD-TYPE" "KRTAP26-1 WILD-TYPE" "KRTAP26-1 WILD-TYPE" 
         TCGA-05-4397          TCGA-05-4398          TCGA-05-4402 
"KRTAP26-1 WILD-TYPE" "KRTAP26-1 WILD-TYPE" "KRTAP26-1 WILD-TYPE" 
         TCGA-05-4405          TCGA-05-4415          TCGA-05-4417 
"KRTAP26-1 WILD-TYPE" "KRTAP26-1 WILD-TYPE" "KRTAP26-1 WILD-TYPE" 
         TCGA-05-4418          TCGA-05-4420          TCGA-05-4424 
"KRTAP26-1 WILD-TYPE" "KRTAP26-1 WILD-TYPE" "KRTAP26-1 WILD-TYPE" 
         TCGA-05-4426          TCGA-05-4427          TCGA-05-4430 
"KRTAP26-1 WILD-TYPE" "KRTAP26-1 WILD-TYPE" "KRTAP26-1 WILD-TYPE" 
         TCGA-05-4432          TCGA-05-4433          TCGA-05-4434 
"KRTAP26-1 WILD-TYPE" "KRTAP26-1 WILD-TYPE" "KRTAP26-1 WILD-TYPE" 
         TCGA-05-5420          TCGA-05-5423          TCGA-05-5425 
"KRTAP26-1 WILD-TYPE" "KRTAP26-1 WILD-TYPE" "KRTAP26-1 WILD-TYPE" 
         TCGA-05-5429          TCGA-05-5715          TCGA-35-3615 
"KRTAP26-1 WILD-TYPE" "KRTAP26-1 WILD-TYPE" "KRTAP26-1 WILD-TYPE" 
         TCGA-35-4122          TCGA-35-4123          TCGA-35-5375 
"KRTAP26-1 WILD-TYPE" "KRTAP26-1 WILD-TYPE" "KRTAP26-1 WILD-TYPE" 
         TCGA-38-4625          TCGA-38-4626          TCGA-38-4627 
"KRTAP26-1 WILD-TYPE"   "KRTAP26-1 MUTATED" "KRTAP26-1 WILD-TYPE" 
         TCGA-38-4628          TCGA-38-4629          TCGA-38-4630 
"KRTAP26-1 WILD-TYPE" "KRTAP26-1 WILD-TYPE" "KRTAP26-1 WILD-TYPE" 
         TCGA-38-4631          TCGA-38-4632          TCGA-38-6178 
  "KRTAP26-1 MUTATED" "KRTAP26-1 WILD-TYPE" "KRTAP26-1 WILD-TYPE" 
         TCGA-44-2655          TCGA-44-2656          TCGA-44-2657 
"KRTAP26-1 WILD-TYPE"   "KRTAP26-1 MUTATED" "KRTAP26-1 WILD-TYPE" 
         TCGA-44-2659          TCGA-44-2661          TCGA-44-2662 
"KRTAP26-1 WILD-TYPE" "KRTAP26-1 WILD-TYPE" "KRTAP26-1 WILD-TYPE" 
         TCGA-44-2665          TCGA-44-2666          TCGA-44-2668 
"KRTAP26-1 WILD-TYPE" "KRTAP26-1 WILD-TYPE" "KRTAP26-1 WILD-TYPE" 
         TCGA-44-3396          TCGA-44-3398          TCGA-44-3918 
"KRTAP26-1 WILD-TYPE" "KRTAP26-1 WILD-TYPE" "KRTAP26-1 WILD-TYPE" 
         TCGA-44-3919          TCGA-44-4112          TCGA-44-5643 
"KRTAP26-1 WILD-TYPE" "KRTAP26-1 WILD-TYPE" "KRTAP26-1 WILD-TYPE" 
         TCGA-44-5645          TCGA-44-6144          TCGA-44-6145 
"KRTAP26-1 WILD-TYPE" "KRTAP26-1 WILD-TYPE" "KRTAP26-1 WILD-TYPE" 
         TCGA-44-6146          TCGA-44-6147          TCGA-44-6148 
"KRTAP26-1 WILD-TYPE" "KRTAP26-1 WILD-TYPE" "KRTAP26-1 WILD-TYPE" 
         TCGA-44-6774          TCGA-44-6775          TCGA-44-6776 
"KRTAP26-1 WILD-TYPE" "KRTAP26-1 WILD-TYPE" "KRTAP26-1 WILD-TYPE" 
         TCGA-44-6777          TCGA-44-6778          TCGA-44-6779 
"KRTAP26-1 WILD-TYPE" "KRTAP26-1 WILD-TYPE" "KRTAP26-1 WILD-TYPE" 
         TCGA-49-4486          TCGA-49-4487          TCGA-49-4488 
"KRTAP26-1 WILD-TYPE" "KRTAP26-1 WILD-TYPE" "KRTAP26-1 WILD-TYPE" 
         TCGA-49-4490          TCGA-49-4494          TCGA-49-4501 
"KRTAP26-1 WILD-TYPE" "KRTAP26-1 WILD-TYPE" "KRTAP26-1 WILD-TYPE" 
         TCGA-49-4505          TCGA-49-4506          TCGA-49-4507 
"KRTAP26-1 WILD-TYPE" "KRTAP26-1 WILD-TYPE" "KRTAP26-1 WILD-TYPE" 
         TCGA-49-4510          TCGA-49-4512          TCGA-49-4514 
"KRTAP26-1 WILD-TYPE" "KRTAP26-1 WILD-TYPE" "KRTAP26-1 WILD-TYPE" 
         TCGA-49-6742          TCGA-49-6743          TCGA-49-6744 
"KRTAP26-1 WILD-TYPE" "KRTAP26-1 WILD-TYPE" "KRTAP26-1 WILD-TYPE" 
         TCGA-49-6745          TCGA-50-5044          TCGA-50-5045 
"KRTAP26-1 WILD-TYPE" "KRTAP26-1 WILD-TYPE" "KRTAP26-1 WILD-TYPE" 
         TCGA-50-5049          TCGA-50-5051          TCGA-50-5055 
"KRTAP26-1 WILD-TYPE" "KRTAP26-1 WILD-TYPE" "KRTAP26-1 WILD-TYPE" 
         TCGA-50-5066          TCGA-50-5068          TCGA-50-5072 
"KRTAP26-1 WILD-TYPE" "KRTAP26-1 WILD-TYPE" "KRTAP26-1 WILD-TYPE" 
         TCGA-50-5930          TCGA-50-5931          TCGA-50-5932 
"KRTAP26-1 WILD-TYPE" "KRTAP26-1 WILD-TYPE" "KRTAP26-1 WILD-TYPE" 
         TCGA-50-5933          TCGA-50-5935          TCGA-50-5936 
"KRTAP26-1 WILD-TYPE" "KRTAP26-1 WILD-TYPE" "KRTAP26-1 WILD-TYPE" 
         TCGA-50-5939          TCGA-50-5941          TCGA-50-5942 
"KRTAP26-1 WILD-TYPE" "KRTAP26-1 WILD-TYPE" "KRTAP26-1 WILD-TYPE" 
         TCGA-50-5944          TCGA-50-5946          TCGA-50-6590 
"KRTAP26-1 WILD-TYPE" "KRTAP26-1 WILD-TYPE" "KRTAP26-1 WILD-TYPE" 
         TCGA-50-6591          TCGA-50-6592          TCGA-50-6593 
"KRTAP26-1 WILD-TYPE" "KRTAP26-1 WILD-TYPE" "KRTAP26-1 WILD-TYPE" 
         TCGA-50-6594          TCGA-50-6595          TCGA-50-6597 
"KRTAP26-1 WILD-TYPE" "KRTAP26-1 WILD-TYPE" "KRTAP26-1 WILD-TYPE" 
         TCGA-55-1592          TCGA-55-1594          TCGA-55-1595 
"KRTAP26-1 WILD-TYPE" "KRTAP26-1 WILD-TYPE" "KRTAP26-1 WILD-TYPE" 
         TCGA-55-1596          TCGA-55-5899          TCGA-55-6543 
"KRTAP26-1 WILD-TYPE" "KRTAP26-1 WILD-TYPE" "KRTAP26-1 WILD-TYPE" 
         TCGA-55-6642          TCGA-55-6712          TCGA-64-1676 
"KRTAP26-1 WILD-TYPE" "KRTAP26-1 WILD-TYPE" "KRTAP26-1 WILD-TYPE" 
         TCGA-64-1677          TCGA-64-1678          TCGA-64-1680 
"KRTAP26-1 WILD-TYPE" "KRTAP26-1 WILD-TYPE" "KRTAP26-1 WILD-TYPE" 
         TCGA-64-5774          TCGA-64-5775          TCGA-64-5778 
"KRTAP26-1 WILD-TYPE" "KRTAP26-1 WILD-TYPE" "KRTAP26-1 WILD-TYPE" 
         TCGA-64-5779          TCGA-64-5781          TCGA-64-5815 
"KRTAP26-1 WILD-TYPE" "KRTAP26-1 WILD-TYPE" "KRTAP26-1 WILD-TYPE" 
         TCGA-67-3770          TCGA-67-3771          TCGA-67-3772 
"KRTAP26-1 WILD-TYPE" "KRTAP26-1 WILD-TYPE" "KRTAP26-1 WILD-TYPE" 
         TCGA-67-3773          TCGA-67-3774          TCGA-67-6215 
"KRTAP26-1 WILD-TYPE" "KRTAP26-1 WILD-TYPE" "KRTAP26-1 WILD-TYPE" 
         TCGA-67-6216          TCGA-67-6217          TCGA-71-6725 
"KRTAP26-1 WILD-TYPE" "KRTAP26-1 WILD-TYPE" "KRTAP26-1 WILD-TYPE" 
         TCGA-73-4658          TCGA-73-4659          TCGA-73-4662 
"KRTAP26-1 WILD-TYPE" "KRTAP26-1 WILD-TYPE" "KRTAP26-1 WILD-TYPE" 
         TCGA-73-4666          TCGA-73-4668          TCGA-73-4670 
"KRTAP26-1 WILD-TYPE" "KRTAP26-1 WILD-TYPE" "KRTAP26-1 WILD-TYPE" 
         TCGA-73-4675          TCGA-73-4676          TCGA-73-4677 
"KRTAP26-1 WILD-TYPE" "KRTAP26-1 WILD-TYPE" "KRTAP26-1 WILD-TYPE" 
         TCGA-91-6828          TCGA-91-6829          TCGA-91-6831 
"KRTAP26-1 WILD-TYPE" "KRTAP26-1 WILD-TYPE" "KRTAP26-1 WILD-TYPE" 
         TCGA-91-6835          TCGA-91-6836 
"KRTAP26-1 WILD-TYPE" "KRTAP26-1 WILD-TYPE" 
[1] "hr=" "2.6"
D272V2, continuous
D272V3, binary
[1] "tbl2"
                     cls
clus                  [,1] [,2]
  KRTAP26-1 MUTATED      2    1
  KRTAP26-1 WILD-TYPE   91   78
        clus
vv       KRTAP26-1 MUTATED KRTAP26-1 WILD-TYPE
  FEMALE                 2                  91
  MALE                   1                  78
D272V4, continuous
D272V5, multiclass
D272V6, multiclass
    clus
vv   KRTAP26-1 MUTATED KRTAP26-1 WILD-TYPE
  T1                 0                  41
  T2                 3                 105
  T3                 0                  14
  T4                 0                   8
D272V7, multiclass
       clus
vv      KRTAP26-1 MUTATED KRTAP26-1 WILD-TYPE
  N0                    3                  92
  N1                    0                  37
  N2+N3                 0                  35
D272V8, multiclass
    clus
vv   KRTAP26-1 MUTATED KRTAP26-1 WILD-TYPE
  M0                 3                 134
  M1                 0                   9
  MX                 0                  22
D272V9, multiclass
     clus
vv    KRTAP26-1 MUTATED KRTAP26-1 WILD-TYPE
  I                   2                  86
  II                  1                  32
  III                 0                  39
  IV                  0                   9
D272V10, binary
[1] "tbl2"
                     cls
clus                  [,1] [,2]
  KRTAP26-1 MUTATED      0    3
  KRTAP26-1 WILD-TYPE   16  153
     clus
vv    KRTAP26-1 MUTATED KRTAP26-1 WILD-TYPE
  NO                  0                  16
  YES                 3                 153
D272V11, continuous
D272V12, continuous
[1] "Remove cluster labels:" "KRTAP26-1 MUTATED"     
clus
  KRTAP26-1 MUTATED KRTAP26-1 WILD-TYPE 
                  1                  81 
         TCGA-05-4384          TCGA-05-4390          TCGA-05-4396 
"KRTAP26-1 WILD-TYPE" "KRTAP26-1 WILD-TYPE" "KRTAP26-1 WILD-TYPE" 
         TCGA-05-4403          TCGA-05-4405          TCGA-05-4410 
"KRTAP26-1 WILD-TYPE" "KRTAP26-1 WILD-TYPE" "KRTAP26-1 WILD-TYPE" 
         TCGA-05-4415          TCGA-05-4417          TCGA-05-4424 
"KRTAP26-1 WILD-TYPE" "KRTAP26-1 WILD-TYPE" "KRTAP26-1 WILD-TYPE" 
         TCGA-05-4427          TCGA-05-4433          TCGA-05-5420 
"KRTAP26-1 WILD-TYPE" "KRTAP26-1 WILD-TYPE" "KRTAP26-1 WILD-TYPE" 
         TCGA-05-5423          TCGA-05-5425          TCGA-05-5428 
"KRTAP26-1 WILD-TYPE" "KRTAP26-1 WILD-TYPE" "KRTAP26-1 WILD-TYPE" 
         TCGA-35-4122          TCGA-35-4123          TCGA-35-5375 
"KRTAP26-1 WILD-TYPE" "KRTAP26-1 WILD-TYPE" "KRTAP26-1 WILD-TYPE" 
         TCGA-38-4629          TCGA-38-4632          TCGA-44-2655 
"KRTAP26-1 WILD-TYPE" "KRTAP26-1 WILD-TYPE" "KRTAP26-1 WILD-TYPE" 
         TCGA-44-2657          TCGA-44-2659          TCGA-44-2662 
"KRTAP26-1 WILD-TYPE" "KRTAP26-1 WILD-TYPE" "KRTAP26-1 WILD-TYPE" 
         TCGA-44-2668          TCGA-44-3398          TCGA-44-3918 
"KRTAP26-1 WILD-TYPE" "KRTAP26-1 WILD-TYPE" "KRTAP26-1 WILD-TYPE" 
         TCGA-44-4112          TCGA-44-5645          TCGA-44-6145 
"KRTAP26-1 WILD-TYPE" "KRTAP26-1 WILD-TYPE" "KRTAP26-1 WILD-TYPE" 
         TCGA-44-6146          TCGA-44-6147          TCGA-44-6148 
"KRTAP26-1 WILD-TYPE" "KRTAP26-1 WILD-TYPE" "KRTAP26-1 WILD-TYPE" 
         TCGA-44-6775          TCGA-44-6776          TCGA-44-6777 
"KRTAP26-1 WILD-TYPE" "KRTAP26-1 WILD-TYPE" "KRTAP26-1 WILD-TYPE" 
         TCGA-44-6778          TCGA-44-6779          TCGA-49-4486 
"KRTAP26-1 WILD-TYPE" "KRTAP26-1 WILD-TYPE" "KRTAP26-1 WILD-TYPE" 
         TCGA-49-4488          TCGA-49-4494          TCGA-49-4505 
"KRTAP26-1 WILD-TYPE" "KRTAP26-1 WILD-TYPE" "KRTAP26-1 WILD-TYPE" 
         TCGA-49-4507          TCGA-50-5051          TCGA-50-5072 
"KRTAP26-1 WILD-TYPE" "KRTAP26-1 WILD-TYPE" "KRTAP26-1 WILD-TYPE" 
         TCGA-50-5939          TCGA-50-5942          TCGA-50-5946 
"KRTAP26-1 WILD-TYPE" "KRTAP26-1 WILD-TYPE" "KRTAP26-1 WILD-TYPE" 
         TCGA-50-6590          TCGA-50-6594          TCGA-50-6595 
"KRTAP26-1 WILD-TYPE" "KRTAP26-1 WILD-TYPE" "KRTAP26-1 WILD-TYPE" 
         TCGA-55-1592          TCGA-55-1595          TCGA-55-6543 
"KRTAP26-1 WILD-TYPE" "KRTAP26-1 WILD-TYPE" "KRTAP26-1 WILD-TYPE" 
         TCGA-55-6712          TCGA-64-1678          TCGA-64-1680 
"KRTAP26-1 WILD-TYPE" "KRTAP26-1 WILD-TYPE" "KRTAP26-1 WILD-TYPE" 
         TCGA-64-5774          TCGA-64-5778          TCGA-64-5779 
"KRTAP26-1 WILD-TYPE" "KRTAP26-1 WILD-TYPE" "KRTAP26-1 WILD-TYPE" 
         TCGA-64-5781          TCGA-64-5815          TCGA-67-6217 
"KRTAP26-1 WILD-TYPE" "KRTAP26-1 WILD-TYPE" "KRTAP26-1 WILD-TYPE" 
         TCGA-73-4659          TCGA-73-4662          TCGA-73-4666 
"KRTAP26-1 WILD-TYPE" "KRTAP26-1 WILD-TYPE" "KRTAP26-1 WILD-TYPE" 
         TCGA-73-4668          TCGA-73-4670          TCGA-73-4675 
"KRTAP26-1 WILD-TYPE" "KRTAP26-1 WILD-TYPE" "KRTAP26-1 WILD-TYPE" 
         TCGA-73-4676          TCGA-73-4677          TCGA-75-5122 
"KRTAP26-1 WILD-TYPE" "KRTAP26-1 WILD-TYPE" "KRTAP26-1 WILD-TYPE" 
         TCGA-75-5125          TCGA-75-5126          TCGA-75-5146 
"KRTAP26-1 WILD-TYPE" "KRTAP26-1 WILD-TYPE" "KRTAP26-1 WILD-TYPE" 
         TCGA-75-6206          TCGA-75-6207          TCGA-80-5611 
"KRTAP26-1 WILD-TYPE" "KRTAP26-1 WILD-TYPE" "KRTAP26-1 WILD-TYPE" 
         TCGA-91-6828          TCGA-91-6829          TCGA-91-6835 
"KRTAP26-1 WILD-TYPE" "KRTAP26-1 WILD-TYPE" "KRTAP26-1 WILD-TYPE" 
D272V13, multiclass
                                             clus
vv                                            KRTAP26-1 MUTATED
  CURRENT REFORMED SMOKER FOR < OR = 15 YEARS                 2
  CURRENT REFORMED SMOKER FOR > 15 YEARS                      0
  CURRENT SMOKER                                              1
  LIFELONG NON-SMOKER                                         0
                                             clus
vv                                            KRTAP26-1 WILD-TYPE
  CURRENT REFORMED SMOKER FOR < OR = 15 YEARS                  60
  CURRENT REFORMED SMOKER FOR > 15 YEARS                       46
  CURRENT SMOKER                                               27
  LIFELONG NON-SMOKER                                          24
D272V14, continuous
[1] "Remove cluster labels:" "KRTAP26-1 MUTATED"     
clus
  KRTAP26-1 MUTATED KRTAP26-1 WILD-TYPE 
                  2                  66 
         TCGA-05-4384          TCGA-05-4390          TCGA-05-4396 
"KRTAP26-1 WILD-TYPE" "KRTAP26-1 WILD-TYPE" "KRTAP26-1 WILD-TYPE" 
         TCGA-05-4405          TCGA-05-4410          TCGA-05-4415 
"KRTAP26-1 WILD-TYPE" "KRTAP26-1 WILD-TYPE" "KRTAP26-1 WILD-TYPE" 
         TCGA-05-4417          TCGA-05-4424          TCGA-05-4427 
"KRTAP26-1 WILD-TYPE" "KRTAP26-1 WILD-TYPE" "KRTAP26-1 WILD-TYPE" 
         TCGA-05-4433          TCGA-05-5420          TCGA-05-5423 
"KRTAP26-1 WILD-TYPE" "KRTAP26-1 WILD-TYPE" "KRTAP26-1 WILD-TYPE" 
         TCGA-05-5425          TCGA-05-5428          TCGA-35-4122 
"KRTAP26-1 WILD-TYPE" "KRTAP26-1 WILD-TYPE" "KRTAP26-1 WILD-TYPE" 
         TCGA-35-4123          TCGA-35-5375          TCGA-38-4625 
"KRTAP26-1 WILD-TYPE" "KRTAP26-1 WILD-TYPE" "KRTAP26-1 WILD-TYPE" 
         TCGA-44-2655          TCGA-44-2657          TCGA-44-2659 
"KRTAP26-1 WILD-TYPE" "KRTAP26-1 WILD-TYPE" "KRTAP26-1 WILD-TYPE" 
         TCGA-44-2662          TCGA-44-2666          TCGA-44-2668 
"KRTAP26-1 WILD-TYPE" "KRTAP26-1 WILD-TYPE" "KRTAP26-1 WILD-TYPE" 
         TCGA-44-3396          TCGA-44-3398          TCGA-44-3918 
"KRTAP26-1 WILD-TYPE" "KRTAP26-1 WILD-TYPE" "KRTAP26-1 WILD-TYPE" 
         TCGA-44-4112          TCGA-44-5645          TCGA-44-6144 
"KRTAP26-1 WILD-TYPE" "KRTAP26-1 WILD-TYPE" "KRTAP26-1 WILD-TYPE" 
         TCGA-44-6145          TCGA-44-6147          TCGA-44-6148 
"KRTAP26-1 WILD-TYPE" "KRTAP26-1 WILD-TYPE" "KRTAP26-1 WILD-TYPE" 
         TCGA-44-6774          TCGA-44-6775          TCGA-44-6776 
"KRTAP26-1 WILD-TYPE" "KRTAP26-1 WILD-TYPE" "KRTAP26-1 WILD-TYPE" 
         TCGA-44-6777          TCGA-44-6778          TCGA-44-6779 
"KRTAP26-1 WILD-TYPE" "KRTAP26-1 WILD-TYPE" "KRTAP26-1 WILD-TYPE" 
         TCGA-49-4486          TCGA-49-4494          TCGA-49-4505 
"KRTAP26-1 WILD-TYPE" "KRTAP26-1 WILD-TYPE" "KRTAP26-1 WILD-TYPE" 
         TCGA-55-1592          TCGA-55-1594          TCGA-55-1595 
"KRTAP26-1 WILD-TYPE" "KRTAP26-1 WILD-TYPE" "KRTAP26-1 WILD-TYPE" 
         TCGA-55-1596          TCGA-55-5899          TCGA-55-6642 
"KRTAP26-1 WILD-TYPE" "KRTAP26-1 WILD-TYPE" "KRTAP26-1 WILD-TYPE" 
         TCGA-55-6712          TCGA-64-1677          TCGA-64-1678 
"KRTAP26-1 WILD-TYPE" "KRTAP26-1 WILD-TYPE" "KRTAP26-1 WILD-TYPE" 
         TCGA-64-1680          TCGA-64-5774          TCGA-64-5775 
"KRTAP26-1 WILD-TYPE" "KRTAP26-1 WILD-TYPE" "KRTAP26-1 WILD-TYPE" 
         TCGA-64-5778          TCGA-64-5779          TCGA-64-5781 
"KRTAP26-1 WILD-TYPE" "KRTAP26-1 WILD-TYPE" "KRTAP26-1 WILD-TYPE" 
         TCGA-73-4659          TCGA-73-4662          TCGA-73-4666 
"KRTAP26-1 WILD-TYPE" "KRTAP26-1 WILD-TYPE" "KRTAP26-1 WILD-TYPE" 
         TCGA-73-4668          TCGA-73-4670          TCGA-73-4675 
"KRTAP26-1 WILD-TYPE" "KRTAP26-1 WILD-TYPE" "KRTAP26-1 WILD-TYPE" 
         TCGA-73-4676          TCGA-91-6829          TCGA-91-6836 
"KRTAP26-1 WILD-TYPE" "KRTAP26-1 WILD-TYPE" "KRTAP26-1 WILD-TYPE" 

Clustering(273) Variable = IVL MUTATION ANALYSIS
D273V1, survival
               sevent
clus2            0  1
  IVL MUTATED    3  2
  IVL WILD-TYPE 96 48
  IVL MUTATED IVL WILD-TYPE 
            5           144 
  IVL MUTATED IVL WILD-TYPE 
            2            48 
$`IVL MUTATED`
TCGA-05-4418 TCGA-05-5425 TCGA-44-4112 TCGA-64-5778 TCGA-91-6829 
        8.98         2.96         4.60        30.44        41.33 

$`IVL WILD-TYPE`
TCGA-05-4249 TCGA-05-4250 TCGA-05-4382 TCGA-05-4384 TCGA-05-4390 TCGA-05-4396 
       38.07         3.98        19.92        14.01        37.02         9.96 
TCGA-05-4397 TCGA-05-4398 TCGA-05-4402 TCGA-05-4405 TCGA-05-4415 TCGA-05-4417 
       24.03        47.05         8.02        20.05         2.96        14.93 
TCGA-05-4420 TCGA-05-4424 TCGA-05-4426 TCGA-05-4427 TCGA-05-4430 TCGA-05-4432 
       29.95        30.02        26.01        26.01        25.02        25.02 
TCGA-05-4433 TCGA-05-4434 TCGA-05-5420 TCGA-05-5423 TCGA-05-5429 TCGA-05-5715 
       24.00        15.02         1.02         4.96         0.99         2.04 
TCGA-35-3615 TCGA-35-4122 TCGA-35-4123 TCGA-35-5375 TCGA-38-4625 TCGA-38-4626 
        0.46         7.36         5.95         8.68        47.61        85.32 
TCGA-38-4627 TCGA-38-4628 TCGA-38-4629 TCGA-38-4630 TCGA-38-4631 TCGA-38-4632 
       37.71        49.02        28.37        35.28        11.64        44.61 
TCGA-38-6178 TCGA-44-2655 TCGA-44-2656 TCGA-44-2657 TCGA-44-2659 TCGA-44-2661 
        5.19        18.87        19.10        13.15        17.39         3.39 
TCGA-44-2662 TCGA-44-2665 TCGA-44-2666 TCGA-44-2668 TCGA-44-3396 TCGA-44-3398 
       15.78        13.15         3.19         8.09        10.22         8.32 
TCGA-44-3918 TCGA-44-3919 TCGA-44-5643 TCGA-44-5645 TCGA-44-6144 TCGA-44-6145 
        6.44         6.21         3.48         6.84         0.30         3.35 
TCGA-44-6146 TCGA-44-6147 TCGA-44-6148 TCGA-44-6774 TCGA-44-6775 TCGA-44-6776 
        9.93         7.76         3.12         5.42         2.70        63.72 
TCGA-44-6777 TCGA-44-6778 TCGA-44-6779 TCGA-49-4486 TCGA-49-4487 TCGA-49-4488 
       32.45        36.49        16.41        76.21        28.11        28.57 
TCGA-49-4490 TCGA-49-4494 TCGA-49-4501 TCGA-49-4505 TCGA-49-4506 TCGA-49-4507 
       12.66        35.54        46.72        14.07        32.84         8.81 
TCGA-49-4510 TCGA-49-4512 TCGA-49-4514 TCGA-49-6742 TCGA-49-6743 TCGA-49-6744 
       29.46        29.75        43.20        15.02        12.13        12.99 
TCGA-49-6745 TCGA-50-5044 TCGA-50-5045 TCGA-50-5049 TCGA-50-5051 TCGA-50-5055 
        4.93        20.48        71.47        48.82        14.96        25.81 
TCGA-50-5066 TCGA-50-5068 TCGA-50-5072 TCGA-50-5930 TCGA-50-5931 TCGA-50-5932 
        9.76        49.28         8.05         9.27         8.78        35.87 
TCGA-50-5933 TCGA-50-5935 TCGA-50-5936 TCGA-50-5939 TCGA-50-5941 TCGA-50-5942 
       77.88        21.47         8.45        15.12         9.37         4.44 
TCGA-50-5944 TCGA-50-5946 TCGA-50-6590 TCGA-50-6591 TCGA-50-6592 TCGA-50-6593 
       12.26        11.47        42.31         3.88        25.51        11.05 
TCGA-50-6594 TCGA-50-6595 TCGA-50-6597 TCGA-55-1592 TCGA-55-1594 TCGA-55-1595 
       12.16         6.21        33.37        23.05        38.73        48.62 
TCGA-55-1596 TCGA-55-5899 TCGA-55-6543 TCGA-55-6642 TCGA-55-6712 TCGA-64-1676 
       45.17         2.86         0.07        32.61         0.79        56.81 
TCGA-64-1677 TCGA-64-1678 TCGA-64-1680 TCGA-64-5774 TCGA-64-5775 TCGA-64-5779 
       20.65        39.09        37.02        83.84         0.10        16.67 
TCGA-64-5781 TCGA-64-5815 TCGA-67-3770 TCGA-67-3771 TCGA-67-3772 TCGA-67-3773 
       39.52         7.33         0.99         1.97         0.59         2.04 
TCGA-67-3774 TCGA-67-6215 TCGA-67-6216 TCGA-67-6217 TCGA-71-6725 TCGA-73-4658 
        0.59         0.89         0.69        13.87         2.01        52.57 
TCGA-73-4659 TCGA-73-4662 TCGA-73-4666 TCGA-73-4668 TCGA-73-4670 TCGA-73-4675 
       23.38        29.95        20.28        15.35         0.46         1.32 
TCGA-73-4676 TCGA-73-4677 TCGA-91-6828 TCGA-91-6831 TCGA-91-6835 TCGA-91-6836 
        4.01         1.25         1.22         1.28         1.15         0.36 

  IVL MUTATED IVL WILD-TYPE 
         2.96          0.07 
  IVL MUTATED IVL WILD-TYPE 
        41.33         85.32 
  IVL MUTATED IVL WILD-TYPE 
         8.98         13.94 
[1] "3.0 - 41.3 (9.0)"  "0.1 - 85.3 (13.9)"
   TCGA-05-4249    TCGA-05-4250    TCGA-05-4382    TCGA-05-4384    TCGA-05-4390 
"IVL WILD-TYPE" "IVL WILD-TYPE" "IVL WILD-TYPE" "IVL WILD-TYPE" "IVL WILD-TYPE" 
   TCGA-05-4396    TCGA-05-4397    TCGA-05-4398    TCGA-05-4402    TCGA-05-4405 
"IVL WILD-TYPE" "IVL WILD-TYPE" "IVL WILD-TYPE" "IVL WILD-TYPE" "IVL WILD-TYPE" 
   TCGA-05-4415    TCGA-05-4417    TCGA-05-4418    TCGA-05-4420    TCGA-05-4424 
"IVL WILD-TYPE" "IVL WILD-TYPE"   "IVL MUTATED" "IVL WILD-TYPE" "IVL WILD-TYPE" 
   TCGA-05-4426    TCGA-05-4427    TCGA-05-4430    TCGA-05-4432    TCGA-05-4433 
"IVL WILD-TYPE" "IVL WILD-TYPE" "IVL WILD-TYPE" "IVL WILD-TYPE" "IVL WILD-TYPE" 
   TCGA-05-4434    TCGA-05-5420    TCGA-05-5423    TCGA-05-5425    TCGA-05-5429 
"IVL WILD-TYPE" "IVL WILD-TYPE" "IVL WILD-TYPE"   "IVL MUTATED" "IVL WILD-TYPE" 
   TCGA-05-5715    TCGA-35-3615    TCGA-35-4122    TCGA-35-4123    TCGA-35-5375 
"IVL WILD-TYPE" "IVL WILD-TYPE" "IVL WILD-TYPE" "IVL WILD-TYPE" "IVL WILD-TYPE" 
   TCGA-38-4625    TCGA-38-4626    TCGA-38-4627    TCGA-38-4628    TCGA-38-4629 
"IVL WILD-TYPE" "IVL WILD-TYPE" "IVL WILD-TYPE" "IVL WILD-TYPE" "IVL WILD-TYPE" 
   TCGA-38-4630    TCGA-38-4631    TCGA-38-4632    TCGA-38-6178    TCGA-44-2655 
"IVL WILD-TYPE" "IVL WILD-TYPE" "IVL WILD-TYPE" "IVL WILD-TYPE" "IVL WILD-TYPE" 
   TCGA-44-2656    TCGA-44-2657    TCGA-44-2659    TCGA-44-2661    TCGA-44-2662 
"IVL WILD-TYPE" "IVL WILD-TYPE" "IVL WILD-TYPE" "IVL WILD-TYPE" "IVL WILD-TYPE" 
   TCGA-44-2665    TCGA-44-2666    TCGA-44-2668    TCGA-44-3396    TCGA-44-3398 
"IVL WILD-TYPE" "IVL WILD-TYPE" "IVL WILD-TYPE" "IVL WILD-TYPE" "IVL WILD-TYPE" 
   TCGA-44-3918    TCGA-44-3919    TCGA-44-4112    TCGA-44-5643    TCGA-44-5645 
"IVL WILD-TYPE" "IVL WILD-TYPE"   "IVL MUTATED" "IVL WILD-TYPE" "IVL WILD-TYPE" 
   TCGA-44-6144    TCGA-44-6145    TCGA-44-6146    TCGA-44-6147    TCGA-44-6148 
"IVL WILD-TYPE" "IVL WILD-TYPE" "IVL WILD-TYPE" "IVL WILD-TYPE" "IVL WILD-TYPE" 
   TCGA-44-6774    TCGA-44-6775    TCGA-44-6776    TCGA-44-6777    TCGA-44-6778 
"IVL WILD-TYPE" "IVL WILD-TYPE" "IVL WILD-TYPE" "IVL WILD-TYPE" "IVL WILD-TYPE" 
   TCGA-44-6779    TCGA-49-4486    TCGA-49-4487    TCGA-49-4488    TCGA-49-4490 
"IVL WILD-TYPE" "IVL WILD-TYPE" "IVL WILD-TYPE" "IVL WILD-TYPE" "IVL WILD-TYPE" 
   TCGA-49-4494    TCGA-49-4501    TCGA-49-4505    TCGA-49-4506    TCGA-49-4507 
"IVL WILD-TYPE" "IVL WILD-TYPE" "IVL WILD-TYPE" "IVL WILD-TYPE" "IVL WILD-TYPE" 
   TCGA-49-4510    TCGA-49-4512    TCGA-49-4514    TCGA-49-6742    TCGA-49-6743 
"IVL WILD-TYPE" "IVL WILD-TYPE" "IVL WILD-TYPE" "IVL WILD-TYPE" "IVL WILD-TYPE" 
   TCGA-49-6744    TCGA-49-6745    TCGA-50-5044    TCGA-50-5045    TCGA-50-5049 
"IVL WILD-TYPE" "IVL WILD-TYPE" "IVL WILD-TYPE" "IVL WILD-TYPE" "IVL WILD-TYPE" 
   TCGA-50-5051    TCGA-50-5055    TCGA-50-5066    TCGA-50-5068    TCGA-50-5072 
"IVL WILD-TYPE" "IVL WILD-TYPE" "IVL WILD-TYPE" "IVL WILD-TYPE" "IVL WILD-TYPE" 
   TCGA-50-5930    TCGA-50-5931    TCGA-50-5932    TCGA-50-5933    TCGA-50-5935 
"IVL WILD-TYPE" "IVL WILD-TYPE" "IVL WILD-TYPE" "IVL WILD-TYPE" "IVL WILD-TYPE" 
   TCGA-50-5936    TCGA-50-5939    TCGA-50-5941    TCGA-50-5942    TCGA-50-5944 
"IVL WILD-TYPE" "IVL WILD-TYPE" "IVL WILD-TYPE" "IVL WILD-TYPE" "IVL WILD-TYPE" 
   TCGA-50-5946    TCGA-50-6590    TCGA-50-6591    TCGA-50-6592    TCGA-50-6593 
"IVL WILD-TYPE" "IVL WILD-TYPE" "IVL WILD-TYPE" "IVL WILD-TYPE" "IVL WILD-TYPE" 
   TCGA-50-6594    TCGA-50-6595    TCGA-50-6597    TCGA-55-1592    TCGA-55-1594 
"IVL WILD-TYPE" "IVL WILD-TYPE" "IVL WILD-TYPE" "IVL WILD-TYPE" "IVL WILD-TYPE" 
   TCGA-55-1595    TCGA-55-1596    TCGA-55-5899    TCGA-55-6543    TCGA-55-6642 
"IVL WILD-TYPE" "IVL WILD-TYPE" "IVL WILD-TYPE" "IVL WILD-TYPE" "IVL WILD-TYPE" 
   TCGA-55-6712    TCGA-64-1676    TCGA-64-1677    TCGA-64-1678    TCGA-64-1680 
"IVL WILD-TYPE" "IVL WILD-TYPE" "IVL WILD-TYPE" "IVL WILD-TYPE" "IVL WILD-TYPE" 
   TCGA-64-5774    TCGA-64-5775    TCGA-64-5778    TCGA-64-5779    TCGA-64-5781 
"IVL WILD-TYPE" "IVL WILD-TYPE"   "IVL MUTATED" "IVL WILD-TYPE" "IVL WILD-TYPE" 
   TCGA-64-5815    TCGA-67-3770    TCGA-67-3771    TCGA-67-3772    TCGA-67-3773 
"IVL WILD-TYPE" "IVL WILD-TYPE" "IVL WILD-TYPE" "IVL WILD-TYPE" "IVL WILD-TYPE" 
   TCGA-67-3774    TCGA-67-6215    TCGA-67-6216    TCGA-67-6217    TCGA-71-6725 
"IVL WILD-TYPE" "IVL WILD-TYPE" "IVL WILD-TYPE" "IVL WILD-TYPE" "IVL WILD-TYPE" 
   TCGA-73-4658    TCGA-73-4659    TCGA-73-4662    TCGA-73-4666    TCGA-73-4668 
"IVL WILD-TYPE" "IVL WILD-TYPE" "IVL WILD-TYPE" "IVL WILD-TYPE" "IVL WILD-TYPE" 
   TCGA-73-4670    TCGA-73-4675    TCGA-73-4676    TCGA-73-4677    TCGA-91-6828 
"IVL WILD-TYPE" "IVL WILD-TYPE" "IVL WILD-TYPE" "IVL WILD-TYPE" "IVL WILD-TYPE" 
   TCGA-91-6829    TCGA-91-6831    TCGA-91-6835    TCGA-91-6836 
  "IVL MUTATED" "IVL WILD-TYPE" "IVL WILD-TYPE" "IVL WILD-TYPE" 
   TCGA-05-4249    TCGA-05-4250    TCGA-05-4382    TCGA-05-4384    TCGA-05-4390 
"IVL WILD-TYPE" "IVL WILD-TYPE" "IVL WILD-TYPE" "IVL WILD-TYPE" "IVL WILD-TYPE" 
   TCGA-05-4396    TCGA-05-4397    TCGA-05-4398    TCGA-05-4402    TCGA-05-4405 
"IVL WILD-TYPE" "IVL WILD-TYPE" "IVL WILD-TYPE" "IVL WILD-TYPE" "IVL WILD-TYPE" 
   TCGA-05-4415    TCGA-05-4417    TCGA-05-4418    TCGA-05-4420    TCGA-05-4424 
"IVL WILD-TYPE" "IVL WILD-TYPE"   "IVL MUTATED" "IVL WILD-TYPE" "IVL WILD-TYPE" 
   TCGA-05-4426    TCGA-05-4427    TCGA-05-4430    TCGA-05-4432    TCGA-05-4433 
"IVL WILD-TYPE" "IVL WILD-TYPE" "IVL WILD-TYPE" "IVL WILD-TYPE" "IVL WILD-TYPE" 
   TCGA-05-4434    TCGA-05-5420    TCGA-05-5423    TCGA-05-5425    TCGA-05-5429 
"IVL WILD-TYPE" "IVL WILD-TYPE" "IVL WILD-TYPE"   "IVL MUTATED" "IVL WILD-TYPE" 
   TCGA-05-5715    TCGA-35-3615    TCGA-35-4122    TCGA-35-4123    TCGA-35-5375 
"IVL WILD-TYPE" "IVL WILD-TYPE" "IVL WILD-TYPE" "IVL WILD-TYPE" "IVL WILD-TYPE" 
   TCGA-38-4625    TCGA-38-4626    TCGA-38-4627    TCGA-38-4628    TCGA-38-4629 
"IVL WILD-TYPE" "IVL WILD-TYPE" "IVL WILD-TYPE" "IVL WILD-TYPE" "IVL WILD-TYPE" 
   TCGA-38-4630    TCGA-38-4631    TCGA-38-4632    TCGA-38-6178    TCGA-44-2655 
"IVL WILD-TYPE" "IVL WILD-TYPE" "IVL WILD-TYPE" "IVL WILD-TYPE" "IVL WILD-TYPE" 
   TCGA-44-2656    TCGA-44-2657    TCGA-44-2659    TCGA-44-2661    TCGA-44-2662 
"IVL WILD-TYPE" "IVL WILD-TYPE" "IVL WILD-TYPE" "IVL WILD-TYPE" "IVL WILD-TYPE" 
   TCGA-44-2665    TCGA-44-2666    TCGA-44-2668    TCGA-44-3396    TCGA-44-3398 
"IVL WILD-TYPE" "IVL WILD-TYPE" "IVL WILD-TYPE" "IVL WILD-TYPE" "IVL WILD-TYPE" 
   TCGA-44-3918    TCGA-44-3919    TCGA-44-4112    TCGA-44-5643    TCGA-44-5645 
"IVL WILD-TYPE" "IVL WILD-TYPE"   "IVL MUTATED" "IVL WILD-TYPE" "IVL WILD-TYPE" 
   TCGA-44-6144    TCGA-44-6145    TCGA-44-6146    TCGA-44-6147    TCGA-44-6148 
"IVL WILD-TYPE" "IVL WILD-TYPE" "IVL WILD-TYPE" "IVL WILD-TYPE" "IVL WILD-TYPE" 
   TCGA-44-6774    TCGA-44-6775    TCGA-44-6776    TCGA-44-6777    TCGA-44-6778 
"IVL WILD-TYPE" "IVL WILD-TYPE" "IVL WILD-TYPE" "IVL WILD-TYPE" "IVL WILD-TYPE" 
   TCGA-44-6779    TCGA-49-4486    TCGA-49-4487    TCGA-49-4488    TCGA-49-4490 
"IVL WILD-TYPE" "IVL WILD-TYPE" "IVL WILD-TYPE" "IVL WILD-TYPE" "IVL WILD-TYPE" 
   TCGA-49-4494    TCGA-49-4501    TCGA-49-4505    TCGA-49-4506    TCGA-49-4507 
"IVL WILD-TYPE" "IVL WILD-TYPE" "IVL WILD-TYPE" "IVL WILD-TYPE" "IVL WILD-TYPE" 
   TCGA-49-4510    TCGA-49-4512    TCGA-49-4514    TCGA-49-6742    TCGA-49-6743 
"IVL WILD-TYPE" "IVL WILD-TYPE" "IVL WILD-TYPE" "IVL WILD-TYPE" "IVL WILD-TYPE" 
   TCGA-49-6744    TCGA-49-6745    TCGA-50-5044    TCGA-50-5045    TCGA-50-5049 
"IVL WILD-TYPE" "IVL WILD-TYPE" "IVL WILD-TYPE" "IVL WILD-TYPE" "IVL WILD-TYPE" 
   TCGA-50-5051    TCGA-50-5055    TCGA-50-5066    TCGA-50-5068    TCGA-50-5072 
"IVL WILD-TYPE" "IVL WILD-TYPE" "IVL WILD-TYPE" "IVL WILD-TYPE" "IVL WILD-TYPE" 
   TCGA-50-5930    TCGA-50-5931    TCGA-50-5932    TCGA-50-5933    TCGA-50-5935 
"IVL WILD-TYPE" "IVL WILD-TYPE" "IVL WILD-TYPE" "IVL WILD-TYPE" "IVL WILD-TYPE" 
   TCGA-50-5936    TCGA-50-5939    TCGA-50-5941    TCGA-50-5942    TCGA-50-5944 
"IVL WILD-TYPE" "IVL WILD-TYPE" "IVL WILD-TYPE" "IVL WILD-TYPE" "IVL WILD-TYPE" 
   TCGA-50-5946    TCGA-50-6590    TCGA-50-6591    TCGA-50-6592    TCGA-50-6593 
"IVL WILD-TYPE" "IVL WILD-TYPE" "IVL WILD-TYPE" "IVL WILD-TYPE" "IVL WILD-TYPE" 
   TCGA-50-6594    TCGA-50-6595    TCGA-50-6597    TCGA-55-1592    TCGA-55-1594 
"IVL WILD-TYPE" "IVL WILD-TYPE" "IVL WILD-TYPE" "IVL WILD-TYPE" "IVL WILD-TYPE" 
   TCGA-55-1595    TCGA-55-1596    TCGA-55-5899    TCGA-55-6543    TCGA-55-6642 
"IVL WILD-TYPE" "IVL WILD-TYPE" "IVL WILD-TYPE" "IVL WILD-TYPE" "IVL WILD-TYPE" 
   TCGA-55-6712    TCGA-64-1676    TCGA-64-1677    TCGA-64-1678    TCGA-64-1680 
"IVL WILD-TYPE" "IVL WILD-TYPE" "IVL WILD-TYPE" "IVL WILD-TYPE" "IVL WILD-TYPE" 
   TCGA-64-5774    TCGA-64-5775    TCGA-64-5778    TCGA-64-5779    TCGA-64-5781 
"IVL WILD-TYPE" "IVL WILD-TYPE"   "IVL MUTATED" "IVL WILD-TYPE" "IVL WILD-TYPE" 
   TCGA-64-5815    TCGA-67-3770    TCGA-67-3771    TCGA-67-3772    TCGA-67-3773 
"IVL WILD-TYPE" "IVL WILD-TYPE" "IVL WILD-TYPE" "IVL WILD-TYPE" "IVL WILD-TYPE" 
   TCGA-67-3774    TCGA-67-6215    TCGA-67-6216    TCGA-67-6217    TCGA-71-6725 
"IVL WILD-TYPE" "IVL WILD-TYPE" "IVL WILD-TYPE" "IVL WILD-TYPE" "IVL WILD-TYPE" 
   TCGA-73-4658    TCGA-73-4659    TCGA-73-4662    TCGA-73-4666    TCGA-73-4668 
"IVL WILD-TYPE" "IVL WILD-TYPE" "IVL WILD-TYPE" "IVL WILD-TYPE" "IVL WILD-TYPE" 
   TCGA-73-4670    TCGA-73-4675    TCGA-73-4676    TCGA-73-4677    TCGA-91-6828 
"IVL WILD-TYPE" "IVL WILD-TYPE" "IVL WILD-TYPE" "IVL WILD-TYPE" "IVL WILD-TYPE" 
   TCGA-91-6829    TCGA-91-6831    TCGA-91-6835    TCGA-91-6836 
  "IVL MUTATED" "IVL WILD-TYPE" "IVL WILD-TYPE" "IVL WILD-TYPE" 
   TCGA-05-4249    TCGA-05-4250    TCGA-05-4382    TCGA-05-4384    TCGA-05-4390 
"IVL WILD-TYPE" "IVL WILD-TYPE" "IVL WILD-TYPE" "IVL WILD-TYPE" "IVL WILD-TYPE" 
   TCGA-05-4396    TCGA-05-4397    TCGA-05-4398    TCGA-05-4402    TCGA-05-4405 
"IVL WILD-TYPE" "IVL WILD-TYPE" "IVL WILD-TYPE" "IVL WILD-TYPE" "IVL WILD-TYPE" 
   TCGA-05-4415    TCGA-05-4417    TCGA-05-4418    TCGA-05-4420    TCGA-05-4424 
"IVL WILD-TYPE" "IVL WILD-TYPE"   "IVL MUTATED" "IVL WILD-TYPE" "IVL WILD-TYPE" 
   TCGA-05-4426    TCGA-05-4427    TCGA-05-4430    TCGA-05-4432    TCGA-05-4433 
"IVL WILD-TYPE" "IVL WILD-TYPE" "IVL WILD-TYPE" "IVL WILD-TYPE" "IVL WILD-TYPE" 
   TCGA-05-4434    TCGA-05-5420    TCGA-05-5423    TCGA-05-5425    TCGA-05-5429 
"IVL WILD-TYPE" "IVL WILD-TYPE" "IVL WILD-TYPE"   "IVL MUTATED" "IVL WILD-TYPE" 
   TCGA-05-5715    TCGA-35-3615    TCGA-35-4122    TCGA-35-4123    TCGA-35-5375 
"IVL WILD-TYPE" "IVL WILD-TYPE" "IVL WILD-TYPE" "IVL WILD-TYPE" "IVL WILD-TYPE" 
   TCGA-38-4625    TCGA-38-4626    TCGA-38-4627    TCGA-38-4628    TCGA-38-4629 
"IVL WILD-TYPE" "IVL WILD-TYPE" "IVL WILD-TYPE" "IVL WILD-TYPE" "IVL WILD-TYPE" 
   TCGA-38-4630    TCGA-38-4631    TCGA-38-4632    TCGA-38-6178    TCGA-44-2655 
"IVL WILD-TYPE" "IVL WILD-TYPE" "IVL WILD-TYPE" "IVL WILD-TYPE" "IVL WILD-TYPE" 
   TCGA-44-2656    TCGA-44-2657    TCGA-44-2659    TCGA-44-2661    TCGA-44-2662 
"IVL WILD-TYPE" "IVL WILD-TYPE" "IVL WILD-TYPE" "IVL WILD-TYPE" "IVL WILD-TYPE" 
   TCGA-44-2665    TCGA-44-2666    TCGA-44-2668    TCGA-44-3396    TCGA-44-3398 
"IVL WILD-TYPE" "IVL WILD-TYPE" "IVL WILD-TYPE" "IVL WILD-TYPE" "IVL WILD-TYPE" 
   TCGA-44-3918    TCGA-44-3919    TCGA-44-4112    TCGA-44-5643    TCGA-44-5645 
"IVL WILD-TYPE" "IVL WILD-TYPE"   "IVL MUTATED" "IVL WILD-TYPE" "IVL WILD-TYPE" 
   TCGA-44-6144    TCGA-44-6145    TCGA-44-6146    TCGA-44-6147    TCGA-44-6148 
"IVL WILD-TYPE" "IVL WILD-TYPE" "IVL WILD-TYPE" "IVL WILD-TYPE" "IVL WILD-TYPE" 
   TCGA-44-6774    TCGA-44-6775    TCGA-44-6776    TCGA-44-6777    TCGA-44-6778 
"IVL WILD-TYPE" "IVL WILD-TYPE" "IVL WILD-TYPE" "IVL WILD-TYPE" "IVL WILD-TYPE" 
   TCGA-44-6779    TCGA-49-4486    TCGA-49-4487    TCGA-49-4488    TCGA-49-4490 
"IVL WILD-TYPE" "IVL WILD-TYPE" "IVL WILD-TYPE" "IVL WILD-TYPE" "IVL WILD-TYPE" 
   TCGA-49-4494    TCGA-49-4501    TCGA-49-4505    TCGA-49-4506    TCGA-49-4507 
"IVL WILD-TYPE" "IVL WILD-TYPE" "IVL WILD-TYPE" "IVL WILD-TYPE" "IVL WILD-TYPE" 
   TCGA-49-4510    TCGA-49-4512    TCGA-49-4514    TCGA-49-6742    TCGA-49-6743 
"IVL WILD-TYPE" "IVL WILD-TYPE" "IVL WILD-TYPE" "IVL WILD-TYPE" "IVL WILD-TYPE" 
   TCGA-49-6744    TCGA-49-6745    TCGA-50-5044    TCGA-50-5045    TCGA-50-5049 
"IVL WILD-TYPE" "IVL WILD-TYPE" "IVL WILD-TYPE" "IVL WILD-TYPE" "IVL WILD-TYPE" 
   TCGA-50-5051    TCGA-50-5055    TCGA-50-5066    TCGA-50-5068    TCGA-50-5072 
"IVL WILD-TYPE" "IVL WILD-TYPE" "IVL WILD-TYPE" "IVL WILD-TYPE" "IVL WILD-TYPE" 
   TCGA-50-5930    TCGA-50-5931    TCGA-50-5932    TCGA-50-5933    TCGA-50-5935 
"IVL WILD-TYPE" "IVL WILD-TYPE" "IVL WILD-TYPE" "IVL WILD-TYPE" "IVL WILD-TYPE" 
   TCGA-50-5936    TCGA-50-5939    TCGA-50-5941    TCGA-50-5942    TCGA-50-5944 
"IVL WILD-TYPE" "IVL WILD-TYPE" "IVL WILD-TYPE" "IVL WILD-TYPE" "IVL WILD-TYPE" 
   TCGA-50-5946    TCGA-50-6590    TCGA-50-6591    TCGA-50-6592    TCGA-50-6593 
"IVL WILD-TYPE" "IVL WILD-TYPE" "IVL WILD-TYPE" "IVL WILD-TYPE" "IVL WILD-TYPE" 
   TCGA-50-6594    TCGA-50-6595    TCGA-50-6597    TCGA-55-1592    TCGA-55-1594 
"IVL WILD-TYPE" "IVL WILD-TYPE" "IVL WILD-TYPE" "IVL WILD-TYPE" "IVL WILD-TYPE" 
   TCGA-55-1595    TCGA-55-1596    TCGA-55-5899    TCGA-55-6543    TCGA-55-6642 
"IVL WILD-TYPE" "IVL WILD-TYPE" "IVL WILD-TYPE" "IVL WILD-TYPE" "IVL WILD-TYPE" 
   TCGA-55-6712    TCGA-64-1676    TCGA-64-1677    TCGA-64-1678    TCGA-64-1680 
"IVL WILD-TYPE" "IVL WILD-TYPE" "IVL WILD-TYPE" "IVL WILD-TYPE" "IVL WILD-TYPE" 
   TCGA-64-5774    TCGA-64-5775    TCGA-64-5778    TCGA-64-5779    TCGA-64-5781 
"IVL WILD-TYPE" "IVL WILD-TYPE"   "IVL MUTATED" "IVL WILD-TYPE" "IVL WILD-TYPE" 
   TCGA-64-5815    TCGA-67-3770    TCGA-67-3771    TCGA-67-3772    TCGA-67-3773 
"IVL WILD-TYPE" "IVL WILD-TYPE" "IVL WILD-TYPE" "IVL WILD-TYPE" "IVL WILD-TYPE" 
   TCGA-67-3774    TCGA-67-6215    TCGA-67-6216    TCGA-67-6217    TCGA-71-6725 
"IVL WILD-TYPE" "IVL WILD-TYPE" "IVL WILD-TYPE" "IVL WILD-TYPE" "IVL WILD-TYPE" 
   TCGA-73-4658    TCGA-73-4659    TCGA-73-4662    TCGA-73-4666    TCGA-73-4668 
"IVL WILD-TYPE" "IVL WILD-TYPE" "IVL WILD-TYPE" "IVL WILD-TYPE" "IVL WILD-TYPE" 
   TCGA-73-4670    TCGA-73-4675    TCGA-73-4676    TCGA-73-4677    TCGA-91-6828 
"IVL WILD-TYPE" "IVL WILD-TYPE" "IVL WILD-TYPE" "IVL WILD-TYPE" "IVL WILD-TYPE" 
   TCGA-91-6829    TCGA-91-6831    TCGA-91-6835    TCGA-91-6836 
  "IVL MUTATED" "IVL WILD-TYPE" "IVL WILD-TYPE" "IVL WILD-TYPE" 
[1] "hr=" "1.4"
D273V2, continuous
D273V3, binary
[1] "tbl2"
               cls
clus            [,1] [,2]
  IVL MUTATED      1    4
  IVL WILD-TYPE   92   75
        clus
vv       IVL MUTATED IVL WILD-TYPE
  FEMALE           1            92
  MALE             4            75
D273V4, continuous
[1] "Remove cluster labels:" "IVL MUTATED"           
clus
  IVL MUTATED IVL WILD-TYPE 
            1            11 
   TCGA-35-4122    TCGA-35-4123    TCGA-35-5375    TCGA-64-1677    TCGA-71-6725 
"IVL WILD-TYPE" "IVL WILD-TYPE" "IVL WILD-TYPE" "IVL WILD-TYPE" "IVL WILD-TYPE" 
   TCGA-73-4659    TCGA-73-4662    TCGA-73-4666    TCGA-73-4668    TCGA-73-4676 
"IVL WILD-TYPE" "IVL WILD-TYPE" "IVL WILD-TYPE" "IVL WILD-TYPE" "IVL WILD-TYPE" 
   TCGA-75-5122 
"IVL WILD-TYPE" 
D273V5, multiclass
D273V6, multiclass
    clus
vv   IVL MUTATED IVL WILD-TYPE
  T1           0            41
  T2           4           104
  T3           1            13
  T4           0             8
D273V7, multiclass
       clus
vv      IVL MUTATED IVL WILD-TYPE
  N0              3            92
  N1              1            36
  N2+N3           1            34
D273V8, multiclass
    clus
vv   IVL MUTATED IVL WILD-TYPE
  M0           4           133
  M1           0             9
  MX           1            21
D273V9, multiclass
     clus
vv    IVL MUTATED IVL WILD-TYPE
  I             3            85
  II            1            32
  III           1            38
  IV            0             9
D273V10, binary
[1] "tbl2"
               cls
clus            [,1] [,2]
  IVL MUTATED      0    5
  IVL WILD-TYPE   16  151
     clus
vv    IVL MUTATED IVL WILD-TYPE
  NO            0            16
  YES           5           151
D273V11, continuous
D273V12, continuous
D273V13, multiclass
                                             clus
vv                                            IVL MUTATED IVL WILD-TYPE
  CURRENT REFORMED SMOKER FOR < OR = 15 YEARS           2            60
  CURRENT REFORMED SMOKER FOR > 15 YEARS                2            44
  CURRENT SMOKER                                        1            27
  LIFELONG NON-SMOKER                                   0            24
D273V14, continuous

Clustering(274) Variable = ZNF623 MUTATION ANALYSIS
D274V1, survival
                  sevent
clus2               0  1
  ZNF623 MUTATED    2  3
  ZNF623 WILD-TYPE 97 47
  ZNF623 MUTATED ZNF623 WILD-TYPE 
               5              144 
  ZNF623 MUTATED ZNF623 WILD-TYPE 
               3               47 
$`ZNF623 MUTATED`
TCGA-05-4396 TCGA-05-4397 TCGA-35-5375 TCGA-55-1592 TCGA-55-6712 
        9.96        24.03         8.68        23.05         0.79 

$`ZNF623 WILD-TYPE`
TCGA-05-4249 TCGA-05-4250 TCGA-05-4382 TCGA-05-4384 TCGA-05-4390 TCGA-05-4398 
       38.07         3.98        19.92        14.01        37.02        47.05 
TCGA-05-4402 TCGA-05-4405 TCGA-05-4415 TCGA-05-4417 TCGA-05-4418 TCGA-05-4420 
        8.02        20.05         2.96        14.93         8.98        29.95 
TCGA-05-4424 TCGA-05-4426 TCGA-05-4427 TCGA-05-4430 TCGA-05-4432 TCGA-05-4433 
       30.02        26.01        26.01        25.02        25.02        24.00 
TCGA-05-4434 TCGA-05-5420 TCGA-05-5423 TCGA-05-5425 TCGA-05-5429 TCGA-05-5715 
       15.02         1.02         4.96         2.96         0.99         2.04 
TCGA-35-3615 TCGA-35-4122 TCGA-35-4123 TCGA-38-4625 TCGA-38-4626 TCGA-38-4627 
        0.46         7.36         5.95        47.61        85.32        37.71 
TCGA-38-4628 TCGA-38-4629 TCGA-38-4630 TCGA-38-4631 TCGA-38-4632 TCGA-38-6178 
       49.02        28.37        35.28        11.64        44.61         5.19 
TCGA-44-2655 TCGA-44-2656 TCGA-44-2657 TCGA-44-2659 TCGA-44-2661 TCGA-44-2662 
       18.87        19.10        13.15        17.39         3.39        15.78 
TCGA-44-2665 TCGA-44-2666 TCGA-44-2668 TCGA-44-3396 TCGA-44-3398 TCGA-44-3918 
       13.15         3.19         8.09        10.22         8.32         6.44 
TCGA-44-3919 TCGA-44-4112 TCGA-44-5643 TCGA-44-5645 TCGA-44-6144 TCGA-44-6145 
        6.21         4.60         3.48         6.84         0.30         3.35 
TCGA-44-6146 TCGA-44-6147 TCGA-44-6148 TCGA-44-6774 TCGA-44-6775 TCGA-44-6776 
        9.93         7.76         3.12         5.42         2.70        63.72 
TCGA-44-6777 TCGA-44-6778 TCGA-44-6779 TCGA-49-4486 TCGA-49-4487 TCGA-49-4488 
       32.45        36.49        16.41        76.21        28.11        28.57 
TCGA-49-4490 TCGA-49-4494 TCGA-49-4501 TCGA-49-4505 TCGA-49-4506 TCGA-49-4507 
       12.66        35.54        46.72        14.07        32.84         8.81 
TCGA-49-4510 TCGA-49-4512 TCGA-49-4514 TCGA-49-6742 TCGA-49-6743 TCGA-49-6744 
       29.46        29.75        43.20        15.02        12.13        12.99 
TCGA-49-6745 TCGA-50-5044 TCGA-50-5045 TCGA-50-5049 TCGA-50-5051 TCGA-50-5055 
        4.93        20.48        71.47        48.82        14.96        25.81 
TCGA-50-5066 TCGA-50-5068 TCGA-50-5072 TCGA-50-5930 TCGA-50-5931 TCGA-50-5932 
        9.76        49.28         8.05         9.27         8.78        35.87 
TCGA-50-5933 TCGA-50-5935 TCGA-50-5936 TCGA-50-5939 TCGA-50-5941 TCGA-50-5942 
       77.88        21.47         8.45        15.12         9.37         4.44 
TCGA-50-5944 TCGA-50-5946 TCGA-50-6590 TCGA-50-6591 TCGA-50-6592 TCGA-50-6593 
       12.26        11.47        42.31         3.88        25.51        11.05 
TCGA-50-6594 TCGA-50-6595 TCGA-50-6597 TCGA-55-1594 TCGA-55-1595 TCGA-55-1596 
       12.16         6.21        33.37        38.73        48.62        45.17 
TCGA-55-5899 TCGA-55-6543 TCGA-55-6642 TCGA-64-1676 TCGA-64-1677 TCGA-64-1678 
        2.86         0.07        32.61        56.81        20.65        39.09 
TCGA-64-1680 TCGA-64-5774 TCGA-64-5775 TCGA-64-5778 TCGA-64-5779 TCGA-64-5781 
       37.02        83.84         0.10        30.44        16.67        39.52 
TCGA-64-5815 TCGA-67-3770 TCGA-67-3771 TCGA-67-3772 TCGA-67-3773 TCGA-67-3774 
        7.33         0.99         1.97         0.59         2.04         0.59 
TCGA-67-6215 TCGA-67-6216 TCGA-67-6217 TCGA-71-6725 TCGA-73-4658 TCGA-73-4659 
        0.89         0.69        13.87         2.01        52.57        23.38 
TCGA-73-4662 TCGA-73-4666 TCGA-73-4668 TCGA-73-4670 TCGA-73-4675 TCGA-73-4676 
       29.95        20.28        15.35         0.46         1.32         4.01 
TCGA-73-4677 TCGA-91-6828 TCGA-91-6829 TCGA-91-6831 TCGA-91-6835 TCGA-91-6836 
        1.25         1.22        41.33         1.28         1.15         0.36 

  ZNF623 MUTATED ZNF623 WILD-TYPE 
            0.79             0.07 
  ZNF623 MUTATED ZNF623 WILD-TYPE 
           24.03            85.32 
  ZNF623 MUTATED ZNF623 WILD-TYPE 
            9.96            13.94 
[1] "0.8 - 24.0 (10.0)" "0.1 - 85.3 (13.9)"
      TCGA-05-4249       TCGA-05-4250       TCGA-05-4382       TCGA-05-4384 
"ZNF623 WILD-TYPE" "ZNF623 WILD-TYPE" "ZNF623 WILD-TYPE" "ZNF623 WILD-TYPE" 
      TCGA-05-4390       TCGA-05-4396       TCGA-05-4397       TCGA-05-4398 
"ZNF623 WILD-TYPE"   "ZNF623 MUTATED"   "ZNF623 MUTATED" "ZNF623 WILD-TYPE" 
      TCGA-05-4402       TCGA-05-4405       TCGA-05-4415       TCGA-05-4417 
"ZNF623 WILD-TYPE" "ZNF623 WILD-TYPE" "ZNF623 WILD-TYPE" "ZNF623 WILD-TYPE" 
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"ZNF623 WILD-TYPE" "ZNF623 WILD-TYPE" "ZNF623 WILD-TYPE" "ZNF623 WILD-TYPE" 
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"ZNF623 WILD-TYPE" "ZNF623 WILD-TYPE" "ZNF623 WILD-TYPE" "ZNF623 WILD-TYPE" 
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"ZNF623 WILD-TYPE" "ZNF623 WILD-TYPE" "ZNF623 WILD-TYPE" "ZNF623 WILD-TYPE" 
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"ZNF623 WILD-TYPE" "ZNF623 WILD-TYPE" "ZNF623 WILD-TYPE" "ZNF623 WILD-TYPE" 
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"ZNF623 WILD-TYPE"   "ZNF623 MUTATED" "ZNF623 WILD-TYPE" "ZNF623 WILD-TYPE" 
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"ZNF623 WILD-TYPE" "ZNF623 WILD-TYPE" "ZNF623 WILD-TYPE" "ZNF623 WILD-TYPE" 
      TCGA-38-4631       TCGA-38-4632       TCGA-38-6178       TCGA-44-2655 
"ZNF623 WILD-TYPE" "ZNF623 WILD-TYPE" "ZNF623 WILD-TYPE" "ZNF623 WILD-TYPE" 
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"ZNF623 WILD-TYPE" "ZNF623 WILD-TYPE" "ZNF623 WILD-TYPE" "ZNF623 WILD-TYPE" 
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"ZNF623 WILD-TYPE" "ZNF623 WILD-TYPE" "ZNF623 WILD-TYPE" "ZNF623 WILD-TYPE" 
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"ZNF623 WILD-TYPE" "ZNF623 WILD-TYPE" "ZNF623 WILD-TYPE" "ZNF623 WILD-TYPE" 
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"ZNF623 WILD-TYPE" "ZNF623 WILD-TYPE" "ZNF623 WILD-TYPE" "ZNF623 WILD-TYPE" 
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"ZNF623 WILD-TYPE" "ZNF623 WILD-TYPE" "ZNF623 WILD-TYPE" "ZNF623 WILD-TYPE" 
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"ZNF623 WILD-TYPE" "ZNF623 WILD-TYPE" "ZNF623 WILD-TYPE" "ZNF623 WILD-TYPE" 
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"ZNF623 WILD-TYPE" "ZNF623 WILD-TYPE" "ZNF623 WILD-TYPE" "ZNF623 WILD-TYPE" 
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"ZNF623 WILD-TYPE" "ZNF623 WILD-TYPE" "ZNF623 WILD-TYPE" "ZNF623 WILD-TYPE" 
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"ZNF623 WILD-TYPE" "ZNF623 WILD-TYPE" "ZNF623 WILD-TYPE" "ZNF623 WILD-TYPE" 
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"ZNF623 WILD-TYPE" "ZNF623 WILD-TYPE" "ZNF623 WILD-TYPE" "ZNF623 WILD-TYPE" 
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"ZNF623 WILD-TYPE" "ZNF623 WILD-TYPE" "ZNF623 WILD-TYPE" "ZNF623 WILD-TYPE" 
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"ZNF623 WILD-TYPE" "ZNF623 WILD-TYPE" "ZNF623 WILD-TYPE" "ZNF623 WILD-TYPE" 
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"ZNF623 WILD-TYPE" "ZNF623 WILD-TYPE" "ZNF623 WILD-TYPE" "ZNF623 WILD-TYPE" 
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"ZNF623 WILD-TYPE" "ZNF623 WILD-TYPE" "ZNF623 WILD-TYPE" "ZNF623 WILD-TYPE" 
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"ZNF623 WILD-TYPE" "ZNF623 WILD-TYPE" "ZNF623 WILD-TYPE" "ZNF623 WILD-TYPE" 
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"ZNF623 WILD-TYPE" "ZNF623 WILD-TYPE" "ZNF623 WILD-TYPE" "ZNF623 WILD-TYPE" 
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"ZNF623 WILD-TYPE" "ZNF623 WILD-TYPE" "ZNF623 WILD-TYPE" "ZNF623 WILD-TYPE" 
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  "ZNF623 MUTATED" "ZNF623 WILD-TYPE" "ZNF623 WILD-TYPE" "ZNF623 WILD-TYPE" 
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"ZNF623 WILD-TYPE" "ZNF623 WILD-TYPE" "ZNF623 WILD-TYPE"   "ZNF623 MUTATED" 
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"ZNF623 WILD-TYPE" "ZNF623 WILD-TYPE" "ZNF623 WILD-TYPE" "ZNF623 WILD-TYPE" 
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"ZNF623 WILD-TYPE" "ZNF623 WILD-TYPE" "ZNF623 WILD-TYPE" "ZNF623 WILD-TYPE" 
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"ZNF623 WILD-TYPE" "ZNF623 WILD-TYPE" "ZNF623 WILD-TYPE" "ZNF623 WILD-TYPE" 
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"ZNF623 WILD-TYPE" "ZNF623 WILD-TYPE" "ZNF623 WILD-TYPE" "ZNF623 WILD-TYPE" 
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"ZNF623 WILD-TYPE" "ZNF623 WILD-TYPE" "ZNF623 WILD-TYPE" "ZNF623 WILD-TYPE" 
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"ZNF623 WILD-TYPE" "ZNF623 WILD-TYPE" "ZNF623 WILD-TYPE" "ZNF623 WILD-TYPE" 
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"ZNF623 WILD-TYPE"   "ZNF623 MUTATED"   "ZNF623 MUTATED" "ZNF623 WILD-TYPE" 
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"ZNF623 WILD-TYPE"   "ZNF623 MUTATED" "ZNF623 WILD-TYPE" "ZNF623 WILD-TYPE" 
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"ZNF623 WILD-TYPE" "ZNF623 WILD-TYPE" "ZNF623 WILD-TYPE" "ZNF623 WILD-TYPE" 
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"ZNF623 WILD-TYPE" "ZNF623 WILD-TYPE" "ZNF623 WILD-TYPE" "ZNF623 WILD-TYPE" 
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"ZNF623 WILD-TYPE" "ZNF623 WILD-TYPE" "ZNF623 WILD-TYPE" "ZNF623 WILD-TYPE" 
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"ZNF623 WILD-TYPE" "ZNF623 WILD-TYPE" "ZNF623 WILD-TYPE" "ZNF623 WILD-TYPE" 
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"ZNF623 WILD-TYPE" "ZNF623 WILD-TYPE" "ZNF623 WILD-TYPE" "ZNF623 WILD-TYPE" 
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"ZNF623 WILD-TYPE" "ZNF623 WILD-TYPE" "ZNF623 WILD-TYPE" "ZNF623 WILD-TYPE" 
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"ZNF623 WILD-TYPE" "ZNF623 WILD-TYPE" "ZNF623 WILD-TYPE" "ZNF623 WILD-TYPE" 
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"ZNF623 WILD-TYPE" "ZNF623 WILD-TYPE" "ZNF623 WILD-TYPE" "ZNF623 WILD-TYPE" 
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"ZNF623 WILD-TYPE" "ZNF623 WILD-TYPE" "ZNF623 WILD-TYPE" "ZNF623 WILD-TYPE" 
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"ZNF623 WILD-TYPE" "ZNF623 WILD-TYPE" "ZNF623 WILD-TYPE" "ZNF623 WILD-TYPE" 
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"ZNF623 WILD-TYPE" "ZNF623 WILD-TYPE" "ZNF623 WILD-TYPE" "ZNF623 WILD-TYPE" 
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"ZNF623 WILD-TYPE" "ZNF623 WILD-TYPE" "ZNF623 WILD-TYPE" "ZNF623 WILD-TYPE" 
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"ZNF623 WILD-TYPE" "ZNF623 WILD-TYPE" "ZNF623 WILD-TYPE" "ZNF623 WILD-TYPE" 
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"ZNF623 WILD-TYPE" "ZNF623 WILD-TYPE" "ZNF623 WILD-TYPE" "ZNF623 WILD-TYPE" 
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"ZNF623 WILD-TYPE" "ZNF623 WILD-TYPE" "ZNF623 WILD-TYPE" "ZNF623 WILD-TYPE" 
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"ZNF623 WILD-TYPE" "ZNF623 WILD-TYPE" "ZNF623 WILD-TYPE" "ZNF623 WILD-TYPE" 
      TCGA-50-5946       TCGA-50-6590       TCGA-50-6591       TCGA-50-6592 
"ZNF623 WILD-TYPE" "ZNF623 WILD-TYPE" "ZNF623 WILD-TYPE" "ZNF623 WILD-TYPE" 
      TCGA-50-6593       TCGA-50-6594       TCGA-50-6595       TCGA-50-6597 
"ZNF623 WILD-TYPE" "ZNF623 WILD-TYPE" "ZNF623 WILD-TYPE" "ZNF623 WILD-TYPE" 
      TCGA-55-1592       TCGA-55-1594       TCGA-55-1595       TCGA-55-1596 
  "ZNF623 MUTATED" "ZNF623 WILD-TYPE" "ZNF623 WILD-TYPE" "ZNF623 WILD-TYPE" 
      TCGA-55-5899       TCGA-55-6543       TCGA-55-6642       TCGA-55-6712 
"ZNF623 WILD-TYPE" "ZNF623 WILD-TYPE" "ZNF623 WILD-TYPE"   "ZNF623 MUTATED" 
      TCGA-64-1676       TCGA-64-1677       TCGA-64-1678       TCGA-64-1680 
"ZNF623 WILD-TYPE" "ZNF623 WILD-TYPE" "ZNF623 WILD-TYPE" "ZNF623 WILD-TYPE" 
      TCGA-64-5774       TCGA-64-5775       TCGA-64-5778       TCGA-64-5779 
"ZNF623 WILD-TYPE" "ZNF623 WILD-TYPE" "ZNF623 WILD-TYPE" "ZNF623 WILD-TYPE" 
      TCGA-64-5781       TCGA-64-5815       TCGA-67-3770       TCGA-67-3771 
"ZNF623 WILD-TYPE" "ZNF623 WILD-TYPE" "ZNF623 WILD-TYPE" "ZNF623 WILD-TYPE" 
      TCGA-67-3772       TCGA-67-3773       TCGA-67-3774       TCGA-67-6215 
"ZNF623 WILD-TYPE" "ZNF623 WILD-TYPE" "ZNF623 WILD-TYPE" "ZNF623 WILD-TYPE" 
      TCGA-67-6216       TCGA-67-6217       TCGA-71-6725       TCGA-73-4658 
"ZNF623 WILD-TYPE" "ZNF623 WILD-TYPE" "ZNF623 WILD-TYPE" "ZNF623 WILD-TYPE" 
      TCGA-73-4659       TCGA-73-4662       TCGA-73-4666       TCGA-73-4668 
"ZNF623 WILD-TYPE" "ZNF623 WILD-TYPE" "ZNF623 WILD-TYPE" "ZNF623 WILD-TYPE" 
      TCGA-73-4670       TCGA-73-4675       TCGA-73-4676       TCGA-73-4677 
"ZNF623 WILD-TYPE" "ZNF623 WILD-TYPE" "ZNF623 WILD-TYPE" "ZNF623 WILD-TYPE" 
      TCGA-91-6828       TCGA-91-6829       TCGA-91-6831       TCGA-91-6835 
"ZNF623 WILD-TYPE" "ZNF623 WILD-TYPE" "ZNF623 WILD-TYPE" "ZNF623 WILD-TYPE" 
      TCGA-91-6836 
"ZNF623 WILD-TYPE" 
      TCGA-05-4249       TCGA-05-4250       TCGA-05-4382       TCGA-05-4384 
"ZNF623 WILD-TYPE" "ZNF623 WILD-TYPE" "ZNF623 WILD-TYPE" "ZNF623 WILD-TYPE" 
      TCGA-05-4390       TCGA-05-4396       TCGA-05-4397       TCGA-05-4398 
"ZNF623 WILD-TYPE"   "ZNF623 MUTATED"   "ZNF623 MUTATED" "ZNF623 WILD-TYPE" 
      TCGA-05-4402       TCGA-05-4405       TCGA-05-4415       TCGA-05-4417 
"ZNF623 WILD-TYPE" "ZNF623 WILD-TYPE" "ZNF623 WILD-TYPE" "ZNF623 WILD-TYPE" 
      TCGA-05-4418       TCGA-05-4420       TCGA-05-4424       TCGA-05-4426 
"ZNF623 WILD-TYPE" "ZNF623 WILD-TYPE" "ZNF623 WILD-TYPE" "ZNF623 WILD-TYPE" 
      TCGA-05-4427       TCGA-05-4430       TCGA-05-4432       TCGA-05-4433 
"ZNF623 WILD-TYPE" "ZNF623 WILD-TYPE" "ZNF623 WILD-TYPE" "ZNF623 WILD-TYPE" 
      TCGA-05-4434       TCGA-05-5420       TCGA-05-5423       TCGA-05-5425 
"ZNF623 WILD-TYPE" "ZNF623 WILD-TYPE" "ZNF623 WILD-TYPE" "ZNF623 WILD-TYPE" 
      TCGA-05-5429       TCGA-05-5715       TCGA-35-3615       TCGA-35-4122 
"ZNF623 WILD-TYPE" "ZNF623 WILD-TYPE" "ZNF623 WILD-TYPE" "ZNF623 WILD-TYPE" 
      TCGA-35-4123       TCGA-35-5375       TCGA-38-4625       TCGA-38-4626 
"ZNF623 WILD-TYPE"   "ZNF623 MUTATED" "ZNF623 WILD-TYPE" "ZNF623 WILD-TYPE" 
      TCGA-38-4627       TCGA-38-4628       TCGA-38-4629       TCGA-38-4630 
"ZNF623 WILD-TYPE" "ZNF623 WILD-TYPE" "ZNF623 WILD-TYPE" "ZNF623 WILD-TYPE" 
      TCGA-38-4631       TCGA-38-4632       TCGA-38-6178       TCGA-44-2655 
"ZNF623 WILD-TYPE" "ZNF623 WILD-TYPE" "ZNF623 WILD-TYPE" "ZNF623 WILD-TYPE" 
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"ZNF623 WILD-TYPE" "ZNF623 WILD-TYPE" "ZNF623 WILD-TYPE" "ZNF623 WILD-TYPE" 
      TCGA-44-2662       TCGA-44-2665       TCGA-44-2666       TCGA-44-2668 
"ZNF623 WILD-TYPE" "ZNF623 WILD-TYPE" "ZNF623 WILD-TYPE" "ZNF623 WILD-TYPE" 
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"ZNF623 WILD-TYPE" "ZNF623 WILD-TYPE" "ZNF623 WILD-TYPE" "ZNF623 WILD-TYPE" 
      TCGA-44-4112       TCGA-44-5643       TCGA-44-5645       TCGA-44-6144 
"ZNF623 WILD-TYPE" "ZNF623 WILD-TYPE" "ZNF623 WILD-TYPE" "ZNF623 WILD-TYPE" 
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"ZNF623 WILD-TYPE" "ZNF623 WILD-TYPE" "ZNF623 WILD-TYPE" "ZNF623 WILD-TYPE" 
      TCGA-44-6774       TCGA-44-6775       TCGA-44-6776       TCGA-44-6777 
"ZNF623 WILD-TYPE" "ZNF623 WILD-TYPE" "ZNF623 WILD-TYPE" "ZNF623 WILD-TYPE" 
      TCGA-44-6778       TCGA-44-6779       TCGA-49-4486       TCGA-49-4487 
"ZNF623 WILD-TYPE" "ZNF623 WILD-TYPE" "ZNF623 WILD-TYPE" "ZNF623 WILD-TYPE" 
      TCGA-49-4488       TCGA-49-4490       TCGA-49-4494       TCGA-49-4501 
"ZNF623 WILD-TYPE" "ZNF623 WILD-TYPE" "ZNF623 WILD-TYPE" "ZNF623 WILD-TYPE" 
      TCGA-49-4505       TCGA-49-4506       TCGA-49-4507       TCGA-49-4510 
"ZNF623 WILD-TYPE" "ZNF623 WILD-TYPE" "ZNF623 WILD-TYPE" "ZNF623 WILD-TYPE" 
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"ZNF623 WILD-TYPE" "ZNF623 WILD-TYPE" "ZNF623 WILD-TYPE" "ZNF623 WILD-TYPE" 
      TCGA-49-6744       TCGA-49-6745       TCGA-50-5044       TCGA-50-5045 
"ZNF623 WILD-TYPE" "ZNF623 WILD-TYPE" "ZNF623 WILD-TYPE" "ZNF623 WILD-TYPE" 
      TCGA-50-5049       TCGA-50-5051       TCGA-50-5055       TCGA-50-5066 
"ZNF623 WILD-TYPE" "ZNF623 WILD-TYPE" "ZNF623 WILD-TYPE" "ZNF623 WILD-TYPE" 
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"ZNF623 WILD-TYPE" "ZNF623 WILD-TYPE" "ZNF623 WILD-TYPE" "ZNF623 WILD-TYPE" 
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"ZNF623 WILD-TYPE" "ZNF623 WILD-TYPE" "ZNF623 WILD-TYPE" "ZNF623 WILD-TYPE" 
      TCGA-55-1592       TCGA-55-1594       TCGA-55-1595       TCGA-55-1596 
  "ZNF623 MUTATED" "ZNF623 WILD-TYPE" "ZNF623 WILD-TYPE" "ZNF623 WILD-TYPE" 
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"ZNF623 WILD-TYPE" "ZNF623 WILD-TYPE" "ZNF623 WILD-TYPE"   "ZNF623 MUTATED" 
      TCGA-64-1676       TCGA-64-1677       TCGA-64-1678       TCGA-64-1680 
"ZNF623 WILD-TYPE" "ZNF623 WILD-TYPE" "ZNF623 WILD-TYPE" "ZNF623 WILD-TYPE" 
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      TCGA-64-5781       TCGA-64-5815       TCGA-67-3770       TCGA-67-3771 
"ZNF623 WILD-TYPE" "ZNF623 WILD-TYPE" "ZNF623 WILD-TYPE" "ZNF623 WILD-TYPE" 
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"ZNF623 WILD-TYPE" "ZNF623 WILD-TYPE" "ZNF623 WILD-TYPE" "ZNF623 WILD-TYPE" 
      TCGA-67-6216       TCGA-67-6217       TCGA-71-6725       TCGA-73-4658 
"ZNF623 WILD-TYPE" "ZNF623 WILD-TYPE" "ZNF623 WILD-TYPE" "ZNF623 WILD-TYPE" 
      TCGA-73-4659       TCGA-73-4662       TCGA-73-4666       TCGA-73-4668 
"ZNF623 WILD-TYPE" "ZNF623 WILD-TYPE" "ZNF623 WILD-TYPE" "ZNF623 WILD-TYPE" 
      TCGA-73-4670       TCGA-73-4675       TCGA-73-4676       TCGA-73-4677 
"ZNF623 WILD-TYPE" "ZNF623 WILD-TYPE" "ZNF623 WILD-TYPE" "ZNF623 WILD-TYPE" 
      TCGA-91-6828       TCGA-91-6829       TCGA-91-6831       TCGA-91-6835 
"ZNF623 WILD-TYPE" "ZNF623 WILD-TYPE" "ZNF623 WILD-TYPE" "ZNF623 WILD-TYPE" 
      TCGA-91-6836 
"ZNF623 WILD-TYPE" 
[1] "hr=" "3.7"
D274V2, continuous
D274V3, binary
[1] "tbl2"
                  cls
clus               [,1] [,2]
  ZNF623 MUTATED      1    6
  ZNF623 WILD-TYPE   92   73
        clus
vv       ZNF623 MUTATED ZNF623 WILD-TYPE
  FEMALE              1               92
  MALE                6               73
D274V4, continuous
[1] "Remove cluster labels:" "ZNF623 MUTATED"        
clus
  ZNF623 MUTATED ZNF623 WILD-TYPE 
               1               11 
      TCGA-35-4122       TCGA-35-4123       TCGA-64-1677       TCGA-64-5778 
"ZNF623 WILD-TYPE" "ZNF623 WILD-TYPE" "ZNF623 WILD-TYPE" "ZNF623 WILD-TYPE" 
      TCGA-71-6725       TCGA-73-4659       TCGA-73-4662       TCGA-73-4666 
"ZNF623 WILD-TYPE" "ZNF623 WILD-TYPE" "ZNF623 WILD-TYPE" "ZNF623 WILD-TYPE" 
      TCGA-73-4668       TCGA-73-4676       TCGA-75-5122 
"ZNF623 WILD-TYPE" "ZNF623 WILD-TYPE" "ZNF623 WILD-TYPE" 
D274V5, multiclass
D274V6, multiclass
    clus
vv   ZNF623 MUTATED ZNF623 WILD-TYPE
  T1              0               41
  T2              5              103
  T3              0               14
  T4              2                6
D274V7, multiclass
       clus
vv      ZNF623 MUTATED ZNF623 WILD-TYPE
  N0                 2               93
  N1                 3               34
  N2+N3              2               33
D274V8, multiclass
    clus
vv   ZNF623 MUTATED ZNF623 WILD-TYPE
  M0              6              131
  M1              0                9
  MX              1               21
D274V9, multiclass
     clus
vv    ZNF623 MUTATED ZNF623 WILD-TYPE
  I                2               86
  II               1               32
  III              3               36
  IV               0                9
D274V10, binary
[1] "tbl2"
                  cls
clus               [,1] [,2]
  ZNF623 MUTATED      0    7
  ZNF623 WILD-TYPE   16  149
     clus
vv    ZNF623 MUTATED ZNF623 WILD-TYPE
  NO               0               16
  YES              7              149
D274V11, continuous
D274V12, continuous
D274V13, multiclass
                                             clus
vv                                            ZNF623 MUTATED ZNF623 WILD-TYPE
  CURRENT REFORMED SMOKER FOR < OR = 15 YEARS              3               59
  CURRENT REFORMED SMOKER FOR > 15 YEARS                   1               45
  CURRENT SMOKER                                           1               27
  LIFELONG NON-SMOKER                                      2               22
D274V14, continuous

Clustering(275) Variable = BASP1 MUTATION ANALYSIS
D275V1, survival
                 sevent
clus2              0  1
  BASP1 MUTATED    1  3
  BASP1 WILD-TYPE 98 47
  BASP1 MUTATED BASP1 WILD-TYPE 
              4             145 
  BASP1 MUTATED BASP1 WILD-TYPE 
              3              47 
$`BASP1 MUTATED`
TCGA-05-4418 TCGA-49-4512 TCGA-50-5049 TCGA-55-1592 
        8.98        29.75        48.82        23.05 

$`BASP1 WILD-TYPE`
TCGA-05-4249 TCGA-05-4250 TCGA-05-4382 TCGA-05-4384 TCGA-05-4390 TCGA-05-4396 
       38.07         3.98        19.92        14.01        37.02         9.96 
TCGA-05-4397 TCGA-05-4398 TCGA-05-4402 TCGA-05-4405 TCGA-05-4415 TCGA-05-4417 
       24.03        47.05         8.02        20.05         2.96        14.93 
TCGA-05-4420 TCGA-05-4424 TCGA-05-4426 TCGA-05-4427 TCGA-05-4430 TCGA-05-4432 
       29.95        30.02        26.01        26.01        25.02        25.02 
TCGA-05-4433 TCGA-05-4434 TCGA-05-5420 TCGA-05-5423 TCGA-05-5425 TCGA-05-5429 
       24.00        15.02         1.02         4.96         2.96         0.99 
TCGA-05-5715 TCGA-35-3615 TCGA-35-4122 TCGA-35-4123 TCGA-35-5375 TCGA-38-4625 
        2.04         0.46         7.36         5.95         8.68        47.61 
TCGA-38-4626 TCGA-38-4627 TCGA-38-4628 TCGA-38-4629 TCGA-38-4630 TCGA-38-4631 
       85.32        37.71        49.02        28.37        35.28        11.64 
TCGA-38-4632 TCGA-38-6178 TCGA-44-2655 TCGA-44-2656 TCGA-44-2657 TCGA-44-2659 
       44.61         5.19        18.87        19.10        13.15        17.39 
TCGA-44-2661 TCGA-44-2662 TCGA-44-2665 TCGA-44-2666 TCGA-44-2668 TCGA-44-3396 
        3.39        15.78        13.15         3.19         8.09        10.22 
TCGA-44-3398 TCGA-44-3918 TCGA-44-3919 TCGA-44-4112 TCGA-44-5643 TCGA-44-5645 
        8.32         6.44         6.21         4.60         3.48         6.84 
TCGA-44-6144 TCGA-44-6145 TCGA-44-6146 TCGA-44-6147 TCGA-44-6148 TCGA-44-6774 
        0.30         3.35         9.93         7.76         3.12         5.42 
TCGA-44-6775 TCGA-44-6776 TCGA-44-6777 TCGA-44-6778 TCGA-44-6779 TCGA-49-4486 
        2.70        63.72        32.45        36.49        16.41        76.21 
TCGA-49-4487 TCGA-49-4488 TCGA-49-4490 TCGA-49-4494 TCGA-49-4501 TCGA-49-4505 
       28.11        28.57        12.66        35.54        46.72        14.07 
TCGA-49-4506 TCGA-49-4507 TCGA-49-4510 TCGA-49-4514 TCGA-49-6742 TCGA-49-6743 
       32.84         8.81        29.46        43.20        15.02        12.13 
TCGA-49-6744 TCGA-49-6745 TCGA-50-5044 TCGA-50-5045 TCGA-50-5051 TCGA-50-5055 
       12.99         4.93        20.48        71.47        14.96        25.81 
TCGA-50-5066 TCGA-50-5068 TCGA-50-5072 TCGA-50-5930 TCGA-50-5931 TCGA-50-5932 
        9.76        49.28         8.05         9.27         8.78        35.87 
TCGA-50-5933 TCGA-50-5935 TCGA-50-5936 TCGA-50-5939 TCGA-50-5941 TCGA-50-5942 
       77.88        21.47         8.45        15.12         9.37         4.44 
TCGA-50-5944 TCGA-50-5946 TCGA-50-6590 TCGA-50-6591 TCGA-50-6592 TCGA-50-6593 
       12.26        11.47        42.31         3.88        25.51        11.05 
TCGA-50-6594 TCGA-50-6595 TCGA-50-6597 TCGA-55-1594 TCGA-55-1595 TCGA-55-1596 
       12.16         6.21        33.37        38.73        48.62        45.17 
TCGA-55-5899 TCGA-55-6543 TCGA-55-6642 TCGA-55-6712 TCGA-64-1676 TCGA-64-1677 
        2.86         0.07        32.61         0.79        56.81        20.65 
TCGA-64-1678 TCGA-64-1680 TCGA-64-5774 TCGA-64-5775 TCGA-64-5778 TCGA-64-5779 
       39.09        37.02        83.84         0.10        30.44        16.67 
TCGA-64-5781 TCGA-64-5815 TCGA-67-3770 TCGA-67-3771 TCGA-67-3772 TCGA-67-3773 
       39.52         7.33         0.99         1.97         0.59         2.04 
TCGA-67-3774 TCGA-67-6215 TCGA-67-6216 TCGA-67-6217 TCGA-71-6725 TCGA-73-4658 
        0.59         0.89         0.69        13.87         2.01        52.57 
TCGA-73-4659 TCGA-73-4662 TCGA-73-4666 TCGA-73-4668 TCGA-73-4670 TCGA-73-4675 
       23.38        29.95        20.28        15.35         0.46         1.32 
TCGA-73-4676 TCGA-73-4677 TCGA-91-6828 TCGA-91-6829 TCGA-91-6831 TCGA-91-6835 
        4.01         1.25         1.22        41.33         1.28         1.15 
TCGA-91-6836 
        0.36 

  BASP1 MUTATED BASP1 WILD-TYPE 
           8.98            0.07 
  BASP1 MUTATED BASP1 WILD-TYPE 
          48.82           85.32 
  BASP1 MUTATED BASP1 WILD-TYPE 
          26.40           13.15 
[1] "9.0 - 48.8 (26.4)" "0.1 - 85.3 (13.2)"
     TCGA-05-4249      TCGA-05-4250      TCGA-05-4382      TCGA-05-4384 
"BASP1 WILD-TYPE" "BASP1 WILD-TYPE" "BASP1 WILD-TYPE" "BASP1 WILD-TYPE" 
     TCGA-05-4390      TCGA-05-4396      TCGA-05-4397      TCGA-05-4398 
"BASP1 WILD-TYPE" "BASP1 WILD-TYPE" "BASP1 WILD-TYPE" "BASP1 WILD-TYPE" 
     TCGA-05-4402      TCGA-05-4405      TCGA-05-4415      TCGA-05-4417 
"BASP1 WILD-TYPE" "BASP1 WILD-TYPE" "BASP1 WILD-TYPE" "BASP1 WILD-TYPE" 
     TCGA-05-4418      TCGA-05-4420      TCGA-05-4424      TCGA-05-4426 
  "BASP1 MUTATED" "BASP1 WILD-TYPE" "BASP1 WILD-TYPE" "BASP1 WILD-TYPE" 
     TCGA-05-4427      TCGA-05-4430      TCGA-05-4432      TCGA-05-4433 
"BASP1 WILD-TYPE" "BASP1 WILD-TYPE" "BASP1 WILD-TYPE" "BASP1 WILD-TYPE" 
     TCGA-05-4434      TCGA-05-5420      TCGA-05-5423      TCGA-05-5425 
"BASP1 WILD-TYPE" "BASP1 WILD-TYPE" "BASP1 WILD-TYPE" "BASP1 WILD-TYPE" 
     TCGA-05-5429      TCGA-05-5715      TCGA-35-3615      TCGA-35-4122 
"BASP1 WILD-TYPE" "BASP1 WILD-TYPE" "BASP1 WILD-TYPE" "BASP1 WILD-TYPE" 
     TCGA-35-4123      TCGA-35-5375      TCGA-38-4625      TCGA-38-4626 
"BASP1 WILD-TYPE" "BASP1 WILD-TYPE" "BASP1 WILD-TYPE" "BASP1 WILD-TYPE" 
     TCGA-38-4627      TCGA-38-4628      TCGA-38-4629      TCGA-38-4630 
"BASP1 WILD-TYPE" "BASP1 WILD-TYPE" "BASP1 WILD-TYPE" "BASP1 WILD-TYPE" 
     TCGA-38-4631      TCGA-38-4632      TCGA-38-6178      TCGA-44-2655 
"BASP1 WILD-TYPE" "BASP1 WILD-TYPE" "BASP1 WILD-TYPE" "BASP1 WILD-TYPE" 
     TCGA-44-2656      TCGA-44-2657      TCGA-44-2659      TCGA-44-2661 
"BASP1 WILD-TYPE" "BASP1 WILD-TYPE" "BASP1 WILD-TYPE" "BASP1 WILD-TYPE" 
     TCGA-44-2662      TCGA-44-2665      TCGA-44-2666      TCGA-44-2668 
"BASP1 WILD-TYPE" "BASP1 WILD-TYPE" "BASP1 WILD-TYPE" "BASP1 WILD-TYPE" 
     TCGA-44-3396      TCGA-44-3398      TCGA-44-3918      TCGA-44-3919 
"BASP1 WILD-TYPE" "BASP1 WILD-TYPE" "BASP1 WILD-TYPE" "BASP1 WILD-TYPE" 
     TCGA-44-4112      TCGA-44-5643      TCGA-44-5645      TCGA-44-6144 
"BASP1 WILD-TYPE" "BASP1 WILD-TYPE" "BASP1 WILD-TYPE" "BASP1 WILD-TYPE" 
     TCGA-44-6145      TCGA-44-6146      TCGA-44-6147      TCGA-44-6148 
"BASP1 WILD-TYPE" "BASP1 WILD-TYPE" "BASP1 WILD-TYPE" "BASP1 WILD-TYPE" 
     TCGA-44-6774      TCGA-44-6775      TCGA-44-6776      TCGA-44-6777 
"BASP1 WILD-TYPE" "BASP1 WILD-TYPE" "BASP1 WILD-TYPE" "BASP1 WILD-TYPE" 
     TCGA-44-6778      TCGA-44-6779      TCGA-49-4486      TCGA-49-4487 
"BASP1 WILD-TYPE" "BASP1 WILD-TYPE" "BASP1 WILD-TYPE" "BASP1 WILD-TYPE" 
     TCGA-49-4488      TCGA-49-4490      TCGA-49-4494      TCGA-49-4501 
"BASP1 WILD-TYPE" "BASP1 WILD-TYPE" "BASP1 WILD-TYPE" "BASP1 WILD-TYPE" 
     TCGA-49-4505      TCGA-49-4506      TCGA-49-4507      TCGA-49-4510 
"BASP1 WILD-TYPE" "BASP1 WILD-TYPE" "BASP1 WILD-TYPE" "BASP1 WILD-TYPE" 
     TCGA-49-4512      TCGA-49-4514      TCGA-49-6742      TCGA-49-6743 
  "BASP1 MUTATED" "BASP1 WILD-TYPE" "BASP1 WILD-TYPE" "BASP1 WILD-TYPE" 
     TCGA-49-6744      TCGA-49-6745      TCGA-50-5044      TCGA-50-5045 
"BASP1 WILD-TYPE" "BASP1 WILD-TYPE" "BASP1 WILD-TYPE" "BASP1 WILD-TYPE" 
     TCGA-50-5049      TCGA-50-5051      TCGA-50-5055      TCGA-50-5066 
  "BASP1 MUTATED" "BASP1 WILD-TYPE" "BASP1 WILD-TYPE" "BASP1 WILD-TYPE" 
     TCGA-50-5068      TCGA-50-5072      TCGA-50-5930      TCGA-50-5931 
"BASP1 WILD-TYPE" "BASP1 WILD-TYPE" "BASP1 WILD-TYPE" "BASP1 WILD-TYPE" 
     TCGA-50-5932      TCGA-50-5933      TCGA-50-5935      TCGA-50-5936 
"BASP1 WILD-TYPE" "BASP1 WILD-TYPE" "BASP1 WILD-TYPE" "BASP1 WILD-TYPE" 
     TCGA-50-5939      TCGA-50-5941      TCGA-50-5942      TCGA-50-5944 
"BASP1 WILD-TYPE" "BASP1 WILD-TYPE" "BASP1 WILD-TYPE" "BASP1 WILD-TYPE" 
     TCGA-50-5946      TCGA-50-6590      TCGA-50-6591      TCGA-50-6592 
"BASP1 WILD-TYPE" "BASP1 WILD-TYPE" "BASP1 WILD-TYPE" "BASP1 WILD-TYPE" 
     TCGA-50-6593      TCGA-50-6594      TCGA-50-6595      TCGA-50-6597 
"BASP1 WILD-TYPE" "BASP1 WILD-TYPE" "BASP1 WILD-TYPE" "BASP1 WILD-TYPE" 
     TCGA-55-1592      TCGA-55-1594      TCGA-55-1595      TCGA-55-1596 
  "BASP1 MUTATED" "BASP1 WILD-TYPE" "BASP1 WILD-TYPE" "BASP1 WILD-TYPE" 
     TCGA-55-5899      TCGA-55-6543      TCGA-55-6642      TCGA-55-6712 
"BASP1 WILD-TYPE" "BASP1 WILD-TYPE" "BASP1 WILD-TYPE" "BASP1 WILD-TYPE" 
     TCGA-64-1676      TCGA-64-1677      TCGA-64-1678      TCGA-64-1680 
"BASP1 WILD-TYPE" "BASP1 WILD-TYPE" "BASP1 WILD-TYPE" "BASP1 WILD-TYPE" 
     TCGA-64-5774      TCGA-64-5775      TCGA-64-5778      TCGA-64-5779 
"BASP1 WILD-TYPE" "BASP1 WILD-TYPE" "BASP1 WILD-TYPE" "BASP1 WILD-TYPE" 
     TCGA-64-5781      TCGA-64-5815      TCGA-67-3770      TCGA-67-3771 
"BASP1 WILD-TYPE" "BASP1 WILD-TYPE" "BASP1 WILD-TYPE" "BASP1 WILD-TYPE" 
     TCGA-67-3772      TCGA-67-3773      TCGA-67-3774      TCGA-67-6215 
"BASP1 WILD-TYPE" "BASP1 WILD-TYPE" "BASP1 WILD-TYPE" "BASP1 WILD-TYPE" 
     TCGA-67-6216      TCGA-67-6217      TCGA-71-6725      TCGA-73-4658 
"BASP1 WILD-TYPE" "BASP1 WILD-TYPE" "BASP1 WILD-TYPE" "BASP1 WILD-TYPE" 
     TCGA-73-4659      TCGA-73-4662      TCGA-73-4666      TCGA-73-4668 
"BASP1 WILD-TYPE" "BASP1 WILD-TYPE" "BASP1 WILD-TYPE" "BASP1 WILD-TYPE" 
     TCGA-73-4670      TCGA-73-4675      TCGA-73-4676      TCGA-73-4677 
"BASP1 WILD-TYPE" "BASP1 WILD-TYPE" "BASP1 WILD-TYPE" "BASP1 WILD-TYPE" 
     TCGA-91-6828      TCGA-91-6829      TCGA-91-6831      TCGA-91-6835 
"BASP1 WILD-TYPE" "BASP1 WILD-TYPE" "BASP1 WILD-TYPE" "BASP1 WILD-TYPE" 
     TCGA-91-6836 
"BASP1 WILD-TYPE" 
     TCGA-05-4249      TCGA-05-4250      TCGA-05-4382      TCGA-05-4384 
"BASP1 WILD-TYPE" "BASP1 WILD-TYPE" "BASP1 WILD-TYPE" "BASP1 WILD-TYPE" 
     TCGA-05-4390      TCGA-05-4396      TCGA-05-4397      TCGA-05-4398 
"BASP1 WILD-TYPE" "BASP1 WILD-TYPE" "BASP1 WILD-TYPE" "BASP1 WILD-TYPE" 
     TCGA-05-4402      TCGA-05-4405      TCGA-05-4415      TCGA-05-4417 
"BASP1 WILD-TYPE" "BASP1 WILD-TYPE" "BASP1 WILD-TYPE" "BASP1 WILD-TYPE" 
     TCGA-05-4418      TCGA-05-4420      TCGA-05-4424      TCGA-05-4426 
  "BASP1 MUTATED" "BASP1 WILD-TYPE" "BASP1 WILD-TYPE" "BASP1 WILD-TYPE" 
     TCGA-05-4427      TCGA-05-4430      TCGA-05-4432      TCGA-05-4433 
"BASP1 WILD-TYPE" "BASP1 WILD-TYPE" "BASP1 WILD-TYPE" "BASP1 WILD-TYPE" 
     TCGA-05-4434      TCGA-05-5420      TCGA-05-5423      TCGA-05-5425 
"BASP1 WILD-TYPE" "BASP1 WILD-TYPE" "BASP1 WILD-TYPE" "BASP1 WILD-TYPE" 
     TCGA-05-5429      TCGA-05-5715      TCGA-35-3615      TCGA-35-4122 
"BASP1 WILD-TYPE" "BASP1 WILD-TYPE" "BASP1 WILD-TYPE" "BASP1 WILD-TYPE" 
     TCGA-35-4123      TCGA-35-5375      TCGA-38-4625      TCGA-38-4626 
"BASP1 WILD-TYPE" "BASP1 WILD-TYPE" "BASP1 WILD-TYPE" "BASP1 WILD-TYPE" 
     TCGA-38-4627      TCGA-38-4628      TCGA-38-4629      TCGA-38-4630 
"BASP1 WILD-TYPE" "BASP1 WILD-TYPE" "BASP1 WILD-TYPE" "BASP1 WILD-TYPE" 
     TCGA-38-4631      TCGA-38-4632      TCGA-38-6178      TCGA-44-2655 
"BASP1 WILD-TYPE" "BASP1 WILD-TYPE" "BASP1 WILD-TYPE" "BASP1 WILD-TYPE" 
     TCGA-44-2656      TCGA-44-2657      TCGA-44-2659      TCGA-44-2661 
"BASP1 WILD-TYPE" "BASP1 WILD-TYPE" "BASP1 WILD-TYPE" "BASP1 WILD-TYPE" 
     TCGA-44-2662      TCGA-44-2665      TCGA-44-2666      TCGA-44-2668 
"BASP1 WILD-TYPE" "BASP1 WILD-TYPE" "BASP1 WILD-TYPE" "BASP1 WILD-TYPE" 
     TCGA-44-3396      TCGA-44-3398      TCGA-44-3918      TCGA-44-3919 
"BASP1 WILD-TYPE" "BASP1 WILD-TYPE" "BASP1 WILD-TYPE" "BASP1 WILD-TYPE" 
     TCGA-44-4112      TCGA-44-5643      TCGA-44-5645      TCGA-44-6144 
"BASP1 WILD-TYPE" "BASP1 WILD-TYPE" "BASP1 WILD-TYPE" "BASP1 WILD-TYPE" 
     TCGA-44-6145      TCGA-44-6146      TCGA-44-6147      TCGA-44-6148 
"BASP1 WILD-TYPE" "BASP1 WILD-TYPE" "BASP1 WILD-TYPE" "BASP1 WILD-TYPE" 
     TCGA-44-6774      TCGA-44-6775      TCGA-44-6776      TCGA-44-6777 
"BASP1 WILD-TYPE" "BASP1 WILD-TYPE" "BASP1 WILD-TYPE" "BASP1 WILD-TYPE" 
     TCGA-44-6778      TCGA-44-6779      TCGA-49-4486      TCGA-49-4487 
"BASP1 WILD-TYPE" "BASP1 WILD-TYPE" "BASP1 WILD-TYPE" "BASP1 WILD-TYPE" 
     TCGA-49-4488      TCGA-49-4490      TCGA-49-4494      TCGA-49-4501 
"BASP1 WILD-TYPE" "BASP1 WILD-TYPE" "BASP1 WILD-TYPE" "BASP1 WILD-TYPE" 
     TCGA-49-4505      TCGA-49-4506      TCGA-49-4507      TCGA-49-4510 
"BASP1 WILD-TYPE" "BASP1 WILD-TYPE" "BASP1 WILD-TYPE" "BASP1 WILD-TYPE" 
     TCGA-49-4512      TCGA-49-4514      TCGA-49-6742      TCGA-49-6743 
  "BASP1 MUTATED" "BASP1 WILD-TYPE" "BASP1 WILD-TYPE" "BASP1 WILD-TYPE" 
     TCGA-49-6744      TCGA-49-6745      TCGA-50-5044      TCGA-50-5045 
"BASP1 WILD-TYPE" "BASP1 WILD-TYPE" "BASP1 WILD-TYPE" "BASP1 WILD-TYPE" 
     TCGA-50-5049      TCGA-50-5051      TCGA-50-5055      TCGA-50-5066 
  "BASP1 MUTATED" "BASP1 WILD-TYPE" "BASP1 WILD-TYPE" "BASP1 WILD-TYPE" 
     TCGA-50-5068      TCGA-50-5072      TCGA-50-5930      TCGA-50-5931 
"BASP1 WILD-TYPE" "BASP1 WILD-TYPE" "BASP1 WILD-TYPE" "BASP1 WILD-TYPE" 
     TCGA-50-5932      TCGA-50-5933      TCGA-50-5935      TCGA-50-5936 
"BASP1 WILD-TYPE" "BASP1 WILD-TYPE" "BASP1 WILD-TYPE" "BASP1 WILD-TYPE" 
     TCGA-50-5939      TCGA-50-5941      TCGA-50-5942      TCGA-50-5944 
"BASP1 WILD-TYPE" "BASP1 WILD-TYPE" "BASP1 WILD-TYPE" "BASP1 WILD-TYPE" 
     TCGA-50-5946      TCGA-50-6590      TCGA-50-6591      TCGA-50-6592 
"BASP1 WILD-TYPE" "BASP1 WILD-TYPE" "BASP1 WILD-TYPE" "BASP1 WILD-TYPE" 
     TCGA-50-6593      TCGA-50-6594      TCGA-50-6595      TCGA-50-6597 
"BASP1 WILD-TYPE" "BASP1 WILD-TYPE" "BASP1 WILD-TYPE" "BASP1 WILD-TYPE" 
     TCGA-55-1592      TCGA-55-1594      TCGA-55-1595      TCGA-55-1596 
  "BASP1 MUTATED" "BASP1 WILD-TYPE" "BASP1 WILD-TYPE" "BASP1 WILD-TYPE" 
     TCGA-55-5899      TCGA-55-6543      TCGA-55-6642      TCGA-55-6712 
"BASP1 WILD-TYPE" "BASP1 WILD-TYPE" "BASP1 WILD-TYPE" "BASP1 WILD-TYPE" 
     TCGA-64-1676      TCGA-64-1677      TCGA-64-1678      TCGA-64-1680 
"BASP1 WILD-TYPE" "BASP1 WILD-TYPE" "BASP1 WILD-TYPE" "BASP1 WILD-TYPE" 
     TCGA-64-5774      TCGA-64-5775      TCGA-64-5778      TCGA-64-5779 
"BASP1 WILD-TYPE" "BASP1 WILD-TYPE" "BASP1 WILD-TYPE" "BASP1 WILD-TYPE" 
     TCGA-64-5781      TCGA-64-5815      TCGA-67-3770      TCGA-67-3771 
"BASP1 WILD-TYPE" "BASP1 WILD-TYPE" "BASP1 WILD-TYPE" "BASP1 WILD-TYPE" 
     TCGA-67-3772      TCGA-67-3773      TCGA-67-3774      TCGA-67-6215 
"BASP1 WILD-TYPE" "BASP1 WILD-TYPE" "BASP1 WILD-TYPE" "BASP1 WILD-TYPE" 
     TCGA-67-6216      TCGA-67-6217      TCGA-71-6725      TCGA-73-4658 
"BASP1 WILD-TYPE" "BASP1 WILD-TYPE" "BASP1 WILD-TYPE" "BASP1 WILD-TYPE" 
     TCGA-73-4659      TCGA-73-4662      TCGA-73-4666      TCGA-73-4668 
"BASP1 WILD-TYPE" "BASP1 WILD-TYPE" "BASP1 WILD-TYPE" "BASP1 WILD-TYPE" 
     TCGA-73-4670      TCGA-73-4675      TCGA-73-4676      TCGA-73-4677 
"BASP1 WILD-TYPE" "BASP1 WILD-TYPE" "BASP1 WILD-TYPE" "BASP1 WILD-TYPE" 
     TCGA-91-6828      TCGA-91-6829      TCGA-91-6831      TCGA-91-6835 
"BASP1 WILD-TYPE" "BASP1 WILD-TYPE" "BASP1 WILD-TYPE" "BASP1 WILD-TYPE" 
     TCGA-91-6836 
"BASP1 WILD-TYPE" 
     TCGA-05-4249      TCGA-05-4250      TCGA-05-4382      TCGA-05-4384 
"BASP1 WILD-TYPE" "BASP1 WILD-TYPE" "BASP1 WILD-TYPE" "BASP1 WILD-TYPE" 
     TCGA-05-4390      TCGA-05-4396      TCGA-05-4397      TCGA-05-4398 
"BASP1 WILD-TYPE" "BASP1 WILD-TYPE" "BASP1 WILD-TYPE" "BASP1 WILD-TYPE" 
     TCGA-05-4402      TCGA-05-4405      TCGA-05-4415      TCGA-05-4417 
"BASP1 WILD-TYPE" "BASP1 WILD-TYPE" "BASP1 WILD-TYPE" "BASP1 WILD-TYPE" 
     TCGA-05-4418      TCGA-05-4420      TCGA-05-4424      TCGA-05-4426 
  "BASP1 MUTATED" "BASP1 WILD-TYPE" "BASP1 WILD-TYPE" "BASP1 WILD-TYPE" 
     TCGA-05-4427      TCGA-05-4430      TCGA-05-4432      TCGA-05-4433 
"BASP1 WILD-TYPE" "BASP1 WILD-TYPE" "BASP1 WILD-TYPE" "BASP1 WILD-TYPE" 
     TCGA-05-4434      TCGA-05-5420      TCGA-05-5423      TCGA-05-5425 
"BASP1 WILD-TYPE" "BASP1 WILD-TYPE" "BASP1 WILD-TYPE" "BASP1 WILD-TYPE" 
     TCGA-05-5429      TCGA-05-5715      TCGA-35-3615      TCGA-35-4122 
"BASP1 WILD-TYPE" "BASP1 WILD-TYPE" "BASP1 WILD-TYPE" "BASP1 WILD-TYPE" 
     TCGA-35-4123      TCGA-35-5375      TCGA-38-4625      TCGA-38-4626 
"BASP1 WILD-TYPE" "BASP1 WILD-TYPE" "BASP1 WILD-TYPE" "BASP1 WILD-TYPE" 
     TCGA-38-4627      TCGA-38-4628      TCGA-38-4629      TCGA-38-4630 
"BASP1 WILD-TYPE" "BASP1 WILD-TYPE" "BASP1 WILD-TYPE" "BASP1 WILD-TYPE" 
     TCGA-38-4631      TCGA-38-4632      TCGA-38-6178      TCGA-44-2655 
"BASP1 WILD-TYPE" "BASP1 WILD-TYPE" "BASP1 WILD-TYPE" "BASP1 WILD-TYPE" 
     TCGA-44-2656      TCGA-44-2657      TCGA-44-2659      TCGA-44-2661 
"BASP1 WILD-TYPE" "BASP1 WILD-TYPE" "BASP1 WILD-TYPE" "BASP1 WILD-TYPE" 
     TCGA-44-2662      TCGA-44-2665      TCGA-44-2666      TCGA-44-2668 
"BASP1 WILD-TYPE" "BASP1 WILD-TYPE" "BASP1 WILD-TYPE" "BASP1 WILD-TYPE" 
     TCGA-44-3396      TCGA-44-3398      TCGA-44-3918      TCGA-44-3919 
"BASP1 WILD-TYPE" "BASP1 WILD-TYPE" "BASP1 WILD-TYPE" "BASP1 WILD-TYPE" 
     TCGA-44-4112      TCGA-44-5643      TCGA-44-5645      TCGA-44-6144 
"BASP1 WILD-TYPE" "BASP1 WILD-TYPE" "BASP1 WILD-TYPE" "BASP1 WILD-TYPE" 
     TCGA-44-6145      TCGA-44-6146      TCGA-44-6147      TCGA-44-6148 
"BASP1 WILD-TYPE" "BASP1 WILD-TYPE" "BASP1 WILD-TYPE" "BASP1 WILD-TYPE" 
     TCGA-44-6774      TCGA-44-6775      TCGA-44-6776      TCGA-44-6777 
"BASP1 WILD-TYPE" "BASP1 WILD-TYPE" "BASP1 WILD-TYPE" "BASP1 WILD-TYPE" 
     TCGA-44-6778      TCGA-44-6779      TCGA-49-4486      TCGA-49-4487 
"BASP1 WILD-TYPE" "BASP1 WILD-TYPE" "BASP1 WILD-TYPE" "BASP1 WILD-TYPE" 
     TCGA-49-4488      TCGA-49-4490      TCGA-49-4494      TCGA-49-4501 
"BASP1 WILD-TYPE" "BASP1 WILD-TYPE" "BASP1 WILD-TYPE" "BASP1 WILD-TYPE" 
     TCGA-49-4505      TCGA-49-4506      TCGA-49-4507      TCGA-49-4510 
"BASP1 WILD-TYPE" "BASP1 WILD-TYPE" "BASP1 WILD-TYPE" "BASP1 WILD-TYPE" 
     TCGA-49-4512      TCGA-49-4514      TCGA-49-6742      TCGA-49-6743 
  "BASP1 MUTATED" "BASP1 WILD-TYPE" "BASP1 WILD-TYPE" "BASP1 WILD-TYPE" 
     TCGA-49-6744      TCGA-49-6745      TCGA-50-5044      TCGA-50-5045 
"BASP1 WILD-TYPE" "BASP1 WILD-TYPE" "BASP1 WILD-TYPE" "BASP1 WILD-TYPE" 
     TCGA-50-5049      TCGA-50-5051      TCGA-50-5055      TCGA-50-5066 
  "BASP1 MUTATED" "BASP1 WILD-TYPE" "BASP1 WILD-TYPE" "BASP1 WILD-TYPE" 
     TCGA-50-5068      TCGA-50-5072      TCGA-50-5930      TCGA-50-5931 
"BASP1 WILD-TYPE" "BASP1 WILD-TYPE" "BASP1 WILD-TYPE" "BASP1 WILD-TYPE" 
     TCGA-50-5932      TCGA-50-5933      TCGA-50-5935      TCGA-50-5936 
"BASP1 WILD-TYPE" "BASP1 WILD-TYPE" "BASP1 WILD-TYPE" "BASP1 WILD-TYPE" 
     TCGA-50-5939      TCGA-50-5941      TCGA-50-5942      TCGA-50-5944 
"BASP1 WILD-TYPE" "BASP1 WILD-TYPE" "BASP1 WILD-TYPE" "BASP1 WILD-TYPE" 
     TCGA-50-5946      TCGA-50-6590      TCGA-50-6591      TCGA-50-6592 
"BASP1 WILD-TYPE" "BASP1 WILD-TYPE" "BASP1 WILD-TYPE" "BASP1 WILD-TYPE" 
     TCGA-50-6593      TCGA-50-6594      TCGA-50-6595      TCGA-50-6597 
"BASP1 WILD-TYPE" "BASP1 WILD-TYPE" "BASP1 WILD-TYPE" "BASP1 WILD-TYPE" 
     TCGA-55-1592      TCGA-55-1594      TCGA-55-1595      TCGA-55-1596 
  "BASP1 MUTATED" "BASP1 WILD-TYPE" "BASP1 WILD-TYPE" "BASP1 WILD-TYPE" 
     TCGA-55-5899      TCGA-55-6543      TCGA-55-6642      TCGA-55-6712 
"BASP1 WILD-TYPE" "BASP1 WILD-TYPE" "BASP1 WILD-TYPE" "BASP1 WILD-TYPE" 
     TCGA-64-1676      TCGA-64-1677      TCGA-64-1678      TCGA-64-1680 
"BASP1 WILD-TYPE" "BASP1 WILD-TYPE" "BASP1 WILD-TYPE" "BASP1 WILD-TYPE" 
     TCGA-64-5774      TCGA-64-5775      TCGA-64-5778      TCGA-64-5779 
"BASP1 WILD-TYPE" "BASP1 WILD-TYPE" "BASP1 WILD-TYPE" "BASP1 WILD-TYPE" 
     TCGA-64-5781      TCGA-64-5815      TCGA-67-3770      TCGA-67-3771 
"BASP1 WILD-TYPE" "BASP1 WILD-TYPE" "BASP1 WILD-TYPE" "BASP1 WILD-TYPE" 
     TCGA-67-3772      TCGA-67-3773      TCGA-67-3774      TCGA-67-6215 
"BASP1 WILD-TYPE" "BASP1 WILD-TYPE" "BASP1 WILD-TYPE" "BASP1 WILD-TYPE" 
     TCGA-67-6216      TCGA-67-6217      TCGA-71-6725      TCGA-73-4658 
"BASP1 WILD-TYPE" "BASP1 WILD-TYPE" "BASP1 WILD-TYPE" "BASP1 WILD-TYPE" 
     TCGA-73-4659      TCGA-73-4662      TCGA-73-4666      TCGA-73-4668 
"BASP1 WILD-TYPE" "BASP1 WILD-TYPE" "BASP1 WILD-TYPE" "BASP1 WILD-TYPE" 
     TCGA-73-4670      TCGA-73-4675      TCGA-73-4676      TCGA-73-4677 
"BASP1 WILD-TYPE" "BASP1 WILD-TYPE" "BASP1 WILD-TYPE" "BASP1 WILD-TYPE" 
     TCGA-91-6828      TCGA-91-6829      TCGA-91-6831      TCGA-91-6835 
"BASP1 WILD-TYPE" "BASP1 WILD-TYPE" "BASP1 WILD-TYPE" "BASP1 WILD-TYPE" 
     TCGA-91-6836 
"BASP1 WILD-TYPE" 
[1] "hr=" "1.7"
D275V2, continuous
D275V3, binary
[1] "tbl2"
                 cls
clus              [,1] [,2]
  BASP1 MUTATED      1    3
  BASP1 WILD-TYPE   92   76
        clus
vv       BASP1 MUTATED BASP1 WILD-TYPE
  FEMALE             1              92
  MALE               3              76
D275V4, continuous
D275V5, multiclass
D275V6, multiclass
    clus
vv   BASP1 MUTATED BASP1 WILD-TYPE
  T1             0              41
  T2             3             105
  T3             1              13
  T4             0               8
D275V7, multiclass
       clus
vv      BASP1 MUTATED BASP1 WILD-TYPE
  N0                2              93
  N1                0              37
  N2+N3             2              33
D275V8, multiclass
    clus
vv   BASP1 MUTATED BASP1 WILD-TYPE
  M0             3             134
  M1             0               9
  MX             1              21
D275V9, multiclass
     clus
vv    BASP1 MUTATED BASP1 WILD-TYPE
  I               2              86
  II              0              33
  III             2              37
  IV              0               9
D275V10, binary
[1] "tbl2"
                 cls
clus              [,1] [,2]
  BASP1 MUTATED      1    3
  BASP1 WILD-TYPE   15  153
     clus
vv    BASP1 MUTATED BASP1 WILD-TYPE
  NO              1              15
  YES             3             153
D275V11, continuous
[1] "Remove cluster labels:" "BASP1 MUTATED"         
clus
  BASP1 MUTATED BASP1 WILD-TYPE 
              1             113 
     TCGA-05-4244      TCGA-05-4249      TCGA-05-4250      TCGA-05-4382 
"BASP1 WILD-TYPE" "BASP1 WILD-TYPE" "BASP1 WILD-TYPE" "BASP1 WILD-TYPE" 
     TCGA-05-4384      TCGA-05-4389      TCGA-05-4390      TCGA-05-4395 
"BASP1 WILD-TYPE" "BASP1 WILD-TYPE" "BASP1 WILD-TYPE" "BASP1 WILD-TYPE" 
     TCGA-05-4396      TCGA-05-4397      TCGA-05-4398      TCGA-05-4402 
"BASP1 WILD-TYPE" "BASP1 WILD-TYPE" "BASP1 WILD-TYPE" "BASP1 WILD-TYPE" 
     TCGA-05-4405      TCGA-05-4410      TCGA-05-4415      TCGA-05-4417 
"BASP1 WILD-TYPE" "BASP1 WILD-TYPE" "BASP1 WILD-TYPE" "BASP1 WILD-TYPE" 
     TCGA-05-4420      TCGA-05-4422      TCGA-05-4424      TCGA-05-4425 
"BASP1 WILD-TYPE" "BASP1 WILD-TYPE" "BASP1 WILD-TYPE" "BASP1 WILD-TYPE" 
     TCGA-05-4426      TCGA-05-4427      TCGA-05-4430      TCGA-05-4432 
"BASP1 WILD-TYPE" "BASP1 WILD-TYPE" "BASP1 WILD-TYPE" "BASP1 WILD-TYPE" 
     TCGA-05-4433      TCGA-05-4434      TCGA-05-5420      TCGA-05-5423 
"BASP1 WILD-TYPE" "BASP1 WILD-TYPE" "BASP1 WILD-TYPE" "BASP1 WILD-TYPE" 
     TCGA-05-5425      TCGA-05-5428      TCGA-35-4122      TCGA-35-4123 
"BASP1 WILD-TYPE" "BASP1 WILD-TYPE" "BASP1 WILD-TYPE" "BASP1 WILD-TYPE" 
     TCGA-35-5375      TCGA-38-4625      TCGA-38-4626      TCGA-38-4629 
"BASP1 WILD-TYPE" "BASP1 WILD-TYPE" "BASP1 WILD-TYPE" "BASP1 WILD-TYPE" 
     TCGA-38-4631      TCGA-38-4632      TCGA-44-2655      TCGA-44-2656 
"BASP1 WILD-TYPE" "BASP1 WILD-TYPE" "BASP1 WILD-TYPE" "BASP1 WILD-TYPE" 
     TCGA-44-2657      TCGA-44-2659      TCGA-44-2662      TCGA-44-2666 
"BASP1 WILD-TYPE" "BASP1 WILD-TYPE" "BASP1 WILD-TYPE" "BASP1 WILD-TYPE" 
     TCGA-44-2668      TCGA-44-3396      TCGA-44-3398      TCGA-44-3918 
"BASP1 WILD-TYPE" "BASP1 WILD-TYPE" "BASP1 WILD-TYPE" "BASP1 WILD-TYPE" 
     TCGA-44-4112      TCGA-44-5643      TCGA-44-5645      TCGA-44-6144 
"BASP1 WILD-TYPE" "BASP1 WILD-TYPE" "BASP1 WILD-TYPE" "BASP1 WILD-TYPE" 
     TCGA-44-6145      TCGA-44-6146      TCGA-44-6148      TCGA-44-6774 
"BASP1 WILD-TYPE" "BASP1 WILD-TYPE" "BASP1 WILD-TYPE" "BASP1 WILD-TYPE" 
     TCGA-44-6775      TCGA-44-6776      TCGA-44-6777      TCGA-44-6778 
"BASP1 WILD-TYPE" "BASP1 WILD-TYPE" "BASP1 WILD-TYPE" "BASP1 WILD-TYPE" 
     TCGA-44-6779      TCGA-49-4486      TCGA-49-4487      TCGA-49-4490 
"BASP1 WILD-TYPE" "BASP1 WILD-TYPE" "BASP1 WILD-TYPE" "BASP1 WILD-TYPE" 
     TCGA-49-4494      TCGA-49-4505      TCGA-49-4506      TCGA-49-4507 
"BASP1 WILD-TYPE" "BASP1 WILD-TYPE" "BASP1 WILD-TYPE" "BASP1 WILD-TYPE" 
     TCGA-49-4510      TCGA-49-4514      TCGA-49-6742      TCGA-49-6743 
"BASP1 WILD-TYPE" "BASP1 WILD-TYPE" "BASP1 WILD-TYPE" "BASP1 WILD-TYPE" 
     TCGA-49-6744      TCGA-49-6745      TCGA-49-6767      TCGA-50-5051 
"BASP1 WILD-TYPE" "BASP1 WILD-TYPE" "BASP1 WILD-TYPE" "BASP1 WILD-TYPE" 
     TCGA-50-5072      TCGA-50-5931      TCGA-50-5939      TCGA-50-5941 
"BASP1 WILD-TYPE" "BASP1 WILD-TYPE" "BASP1 WILD-TYPE" "BASP1 WILD-TYPE" 
     TCGA-50-5942      TCGA-50-6590      TCGA-55-1596      TCGA-55-6543 
"BASP1 WILD-TYPE" "BASP1 WILD-TYPE" "BASP1 WILD-TYPE" "BASP1 WILD-TYPE" 
     TCGA-64-1676      TCGA-64-1677      TCGA-64-1678      TCGA-64-1680 
"BASP1 WILD-TYPE" "BASP1 WILD-TYPE" "BASP1 WILD-TYPE" "BASP1 WILD-TYPE" 
     TCGA-64-5774      TCGA-64-5775      TCGA-64-5778      TCGA-64-5779 
"BASP1 WILD-TYPE" "BASP1 WILD-TYPE" "BASP1 WILD-TYPE" "BASP1 WILD-TYPE" 
     TCGA-64-5781      TCGA-64-5815      TCGA-73-4658      TCGA-73-4659 
"BASP1 WILD-TYPE" "BASP1 WILD-TYPE" "BASP1 WILD-TYPE" "BASP1 WILD-TYPE" 
     TCGA-73-4662      TCGA-73-4666      TCGA-73-4668      TCGA-73-4670 
"BASP1 WILD-TYPE" "BASP1 WILD-TYPE" "BASP1 WILD-TYPE" "BASP1 WILD-TYPE" 
     TCGA-73-4675      TCGA-73-4676      TCGA-75-5122      TCGA-75-5125 
"BASP1 WILD-TYPE" "BASP1 WILD-TYPE" "BASP1 WILD-TYPE" "BASP1 WILD-TYPE" 
     TCGA-75-5126      TCGA-75-6203      TCGA-75-6206      TCGA-75-6207 
"BASP1 WILD-TYPE" "BASP1 WILD-TYPE" "BASP1 WILD-TYPE" "BASP1 WILD-TYPE" 
     TCGA-75-6211      TCGA-80-5611      TCGA-91-6829      TCGA-91-6835 
"BASP1 WILD-TYPE" "BASP1 WILD-TYPE" "BASP1 WILD-TYPE" "BASP1 WILD-TYPE" 
     TCGA-91-6836 
"BASP1 WILD-TYPE" 
D275V12, continuous
[1] "Remove cluster labels:" "BASP1 MUTATED"         
clus
  BASP1 MUTATED BASP1 WILD-TYPE 
              1              81 
     TCGA-05-4384      TCGA-05-4390      TCGA-05-4396      TCGA-05-4403 
"BASP1 WILD-TYPE" "BASP1 WILD-TYPE" "BASP1 WILD-TYPE" "BASP1 WILD-TYPE" 
     TCGA-05-4405      TCGA-05-4410      TCGA-05-4415      TCGA-05-4417 
"BASP1 WILD-TYPE" "BASP1 WILD-TYPE" "BASP1 WILD-TYPE" "BASP1 WILD-TYPE" 
     TCGA-05-4424      TCGA-05-4427      TCGA-05-4433      TCGA-05-5420 
"BASP1 WILD-TYPE" "BASP1 WILD-TYPE" "BASP1 WILD-TYPE" "BASP1 WILD-TYPE" 
     TCGA-05-5423      TCGA-05-5425      TCGA-05-5428      TCGA-35-4122 
"BASP1 WILD-TYPE" "BASP1 WILD-TYPE" "BASP1 WILD-TYPE" "BASP1 WILD-TYPE" 
     TCGA-35-4123      TCGA-35-5375      TCGA-38-4629      TCGA-38-4632 
"BASP1 WILD-TYPE" "BASP1 WILD-TYPE" "BASP1 WILD-TYPE" "BASP1 WILD-TYPE" 
     TCGA-44-2655      TCGA-44-2656      TCGA-44-2657      TCGA-44-2659 
"BASP1 WILD-TYPE" "BASP1 WILD-TYPE" "BASP1 WILD-TYPE" "BASP1 WILD-TYPE" 
     TCGA-44-2662      TCGA-44-2668      TCGA-44-3398      TCGA-44-3918 
"BASP1 WILD-TYPE" "BASP1 WILD-TYPE" "BASP1 WILD-TYPE" "BASP1 WILD-TYPE" 
     TCGA-44-4112      TCGA-44-5645      TCGA-44-6145      TCGA-44-6146 
"BASP1 WILD-TYPE" "BASP1 WILD-TYPE" "BASP1 WILD-TYPE" "BASP1 WILD-TYPE" 
     TCGA-44-6147      TCGA-44-6148      TCGA-44-6775      TCGA-44-6776 
"BASP1 WILD-TYPE" "BASP1 WILD-TYPE" "BASP1 WILD-TYPE" "BASP1 WILD-TYPE" 
     TCGA-44-6777      TCGA-44-6778      TCGA-44-6779      TCGA-49-4486 
"BASP1 WILD-TYPE" "BASP1 WILD-TYPE" "BASP1 WILD-TYPE" "BASP1 WILD-TYPE" 
     TCGA-49-4488      TCGA-49-4494      TCGA-49-4505      TCGA-49-4507 
"BASP1 WILD-TYPE" "BASP1 WILD-TYPE" "BASP1 WILD-TYPE" "BASP1 WILD-TYPE" 
     TCGA-50-5051      TCGA-50-5072      TCGA-50-5939      TCGA-50-5942 
"BASP1 WILD-TYPE" "BASP1 WILD-TYPE" "BASP1 WILD-TYPE" "BASP1 WILD-TYPE" 
     TCGA-50-5946      TCGA-50-6590      TCGA-50-6594      TCGA-50-6595 
"BASP1 WILD-TYPE" "BASP1 WILD-TYPE" "BASP1 WILD-TYPE" "BASP1 WILD-TYPE" 
     TCGA-55-1595      TCGA-55-6543      TCGA-55-6712      TCGA-64-1678 
"BASP1 WILD-TYPE" "BASP1 WILD-TYPE" "BASP1 WILD-TYPE" "BASP1 WILD-TYPE" 
     TCGA-64-1680      TCGA-64-5774      TCGA-64-5778      TCGA-64-5779 
"BASP1 WILD-TYPE" "BASP1 WILD-TYPE" "BASP1 WILD-TYPE" "BASP1 WILD-TYPE" 
     TCGA-64-5781      TCGA-64-5815      TCGA-67-6217      TCGA-73-4659 
"BASP1 WILD-TYPE" "BASP1 WILD-TYPE" "BASP1 WILD-TYPE" "BASP1 WILD-TYPE" 
     TCGA-73-4662      TCGA-73-4666      TCGA-73-4668      TCGA-73-4670 
"BASP1 WILD-TYPE" "BASP1 WILD-TYPE" "BASP1 WILD-TYPE" "BASP1 WILD-TYPE" 
     TCGA-73-4675      TCGA-73-4676      TCGA-73-4677      TCGA-75-5122 
"BASP1 WILD-TYPE" "BASP1 WILD-TYPE" "BASP1 WILD-TYPE" "BASP1 WILD-TYPE" 
     TCGA-75-5125      TCGA-75-5126      TCGA-75-5146      TCGA-75-6206 
"BASP1 WILD-TYPE" "BASP1 WILD-TYPE" "BASP1 WILD-TYPE" "BASP1 WILD-TYPE" 
     TCGA-75-6207      TCGA-80-5611      TCGA-91-6828      TCGA-91-6829 
"BASP1 WILD-TYPE" "BASP1 WILD-TYPE" "BASP1 WILD-TYPE" "BASP1 WILD-TYPE" 
     TCGA-91-6835 
"BASP1 WILD-TYPE" 
D275V13, multiclass
                                             clus
vv                                            BASP1 MUTATED BASP1 WILD-TYPE
  CURRENT REFORMED SMOKER FOR < OR = 15 YEARS             1              61
  CURRENT REFORMED SMOKER FOR > 15 YEARS                  0              46
  CURRENT SMOKER                                          1              27
  LIFELONG NON-SMOKER                                     1              23
D275V14, continuous
[1] "Remove cluster labels:" "BASP1 MUTATED"         
clus
  BASP1 MUTATED BASP1 WILD-TYPE 
              1              67 
     TCGA-05-4384      TCGA-05-4390      TCGA-05-4396      TCGA-05-4405 
"BASP1 WILD-TYPE" "BASP1 WILD-TYPE" "BASP1 WILD-TYPE" "BASP1 WILD-TYPE" 
     TCGA-05-4410      TCGA-05-4415      TCGA-05-4417      TCGA-05-4424 
"BASP1 WILD-TYPE" "BASP1 WILD-TYPE" "BASP1 WILD-TYPE" "BASP1 WILD-TYPE" 
     TCGA-05-4427      TCGA-05-4433      TCGA-05-5420      TCGA-05-5423 
"BASP1 WILD-TYPE" "BASP1 WILD-TYPE" "BASP1 WILD-TYPE" "BASP1 WILD-TYPE" 
     TCGA-05-5425      TCGA-05-5428      TCGA-35-4122      TCGA-35-4123 
"BASP1 WILD-TYPE" "BASP1 WILD-TYPE" "BASP1 WILD-TYPE" "BASP1 WILD-TYPE" 
     TCGA-35-5375      TCGA-38-4625      TCGA-38-4626      TCGA-44-2655 
"BASP1 WILD-TYPE" "BASP1 WILD-TYPE" "BASP1 WILD-TYPE" "BASP1 WILD-TYPE" 
     TCGA-44-2656      TCGA-44-2657      TCGA-44-2659      TCGA-44-2662 
"BASP1 WILD-TYPE" "BASP1 WILD-TYPE" "BASP1 WILD-TYPE" "BASP1 WILD-TYPE" 
     TCGA-44-2666      TCGA-44-2668      TCGA-44-3396      TCGA-44-3398 
"BASP1 WILD-TYPE" "BASP1 WILD-TYPE" "BASP1 WILD-TYPE" "BASP1 WILD-TYPE" 
     TCGA-44-3918      TCGA-44-4112      TCGA-44-5645      TCGA-44-6144 
"BASP1 WILD-TYPE" "BASP1 WILD-TYPE" "BASP1 WILD-TYPE" "BASP1 WILD-TYPE" 
     TCGA-44-6145      TCGA-44-6147      TCGA-44-6148      TCGA-44-6774 
"BASP1 WILD-TYPE" "BASP1 WILD-TYPE" "BASP1 WILD-TYPE" "BASP1 WILD-TYPE" 
     TCGA-44-6775      TCGA-44-6776      TCGA-44-6777      TCGA-44-6778 
"BASP1 WILD-TYPE" "BASP1 WILD-TYPE" "BASP1 WILD-TYPE" "BASP1 WILD-TYPE" 
     TCGA-44-6779      TCGA-49-4486      TCGA-49-4494      TCGA-49-4505 
"BASP1 WILD-TYPE" "BASP1 WILD-TYPE" "BASP1 WILD-TYPE" "BASP1 WILD-TYPE" 
     TCGA-55-1594      TCGA-55-1595      TCGA-55-1596      TCGA-55-5899 
"BASP1 WILD-TYPE" "BASP1 WILD-TYPE" "BASP1 WILD-TYPE" "BASP1 WILD-TYPE" 
     TCGA-55-6642      TCGA-55-6712      TCGA-64-1677      TCGA-64-1678 
"BASP1 WILD-TYPE" "BASP1 WILD-TYPE" "BASP1 WILD-TYPE" "BASP1 WILD-TYPE" 
     TCGA-64-1680      TCGA-64-5774      TCGA-64-5775      TCGA-64-5778 
"BASP1 WILD-TYPE" "BASP1 WILD-TYPE" "BASP1 WILD-TYPE" "BASP1 WILD-TYPE" 
     TCGA-64-5779      TCGA-64-5781      TCGA-73-4659      TCGA-73-4662 
"BASP1 WILD-TYPE" "BASP1 WILD-TYPE" "BASP1 WILD-TYPE" "BASP1 WILD-TYPE" 
     TCGA-73-4666      TCGA-73-4668      TCGA-73-4670      TCGA-73-4675 
"BASP1 WILD-TYPE" "BASP1 WILD-TYPE" "BASP1 WILD-TYPE" "BASP1 WILD-TYPE" 
     TCGA-73-4676      TCGA-91-6829      TCGA-91-6836 
"BASP1 WILD-TYPE" "BASP1 WILD-TYPE" "BASP1 WILD-TYPE" 

Clustering(276) Variable = C10ORF71 MUTATION ANALYSIS
D276V1, survival
                    sevent
clus2                 0  1
  C10ORF71 MUTATED    3  2
  C10ORF71 WILD-TYPE 96 48
  C10ORF71 MUTATED C10ORF71 WILD-TYPE 
                 5                144 
  C10ORF71 MUTATED C10ORF71 WILD-TYPE 
                 2                 48 
$`C10ORF71 MUTATED`
TCGA-05-4382 TCGA-38-4632 TCGA-50-6592 TCGA-64-5779 TCGA-67-3770 
       19.92        44.61        25.51        16.67         0.99 

$`C10ORF71 WILD-TYPE`
TCGA-05-4249 TCGA-05-4250 TCGA-05-4384 TCGA-05-4390 TCGA-05-4396 TCGA-05-4397 
       38.07         3.98        14.01        37.02         9.96        24.03 
TCGA-05-4398 TCGA-05-4402 TCGA-05-4405 TCGA-05-4415 TCGA-05-4417 TCGA-05-4418 
       47.05         8.02        20.05         2.96        14.93         8.98 
TCGA-05-4420 TCGA-05-4424 TCGA-05-4426 TCGA-05-4427 TCGA-05-4430 TCGA-05-4432 
       29.95        30.02        26.01        26.01        25.02        25.02 
TCGA-05-4433 TCGA-05-4434 TCGA-05-5420 TCGA-05-5423 TCGA-05-5425 TCGA-05-5429 
       24.00        15.02         1.02         4.96         2.96         0.99 
TCGA-05-5715 TCGA-35-3615 TCGA-35-4122 TCGA-35-4123 TCGA-35-5375 TCGA-38-4625 
        2.04         0.46         7.36         5.95         8.68        47.61 
TCGA-38-4626 TCGA-38-4627 TCGA-38-4628 TCGA-38-4629 TCGA-38-4630 TCGA-38-4631 
       85.32        37.71        49.02        28.37        35.28        11.64 
TCGA-38-6178 TCGA-44-2655 TCGA-44-2656 TCGA-44-2657 TCGA-44-2659 TCGA-44-2661 
        5.19        18.87        19.10        13.15        17.39         3.39 
TCGA-44-2662 TCGA-44-2665 TCGA-44-2666 TCGA-44-2668 TCGA-44-3396 TCGA-44-3398 
       15.78        13.15         3.19         8.09        10.22         8.32 
TCGA-44-3918 TCGA-44-3919 TCGA-44-4112 TCGA-44-5643 TCGA-44-5645 TCGA-44-6144 
        6.44         6.21         4.60         3.48         6.84         0.30 
TCGA-44-6145 TCGA-44-6146 TCGA-44-6147 TCGA-44-6148 TCGA-44-6774 TCGA-44-6775 
        3.35         9.93         7.76         3.12         5.42         2.70 
TCGA-44-6776 TCGA-44-6777 TCGA-44-6778 TCGA-44-6779 TCGA-49-4486 TCGA-49-4487 
       63.72        32.45        36.49        16.41        76.21        28.11 
TCGA-49-4488 TCGA-49-4490 TCGA-49-4494 TCGA-49-4501 TCGA-49-4505 TCGA-49-4506 
       28.57        12.66        35.54        46.72        14.07        32.84 
TCGA-49-4507 TCGA-49-4510 TCGA-49-4512 TCGA-49-4514 TCGA-49-6742 TCGA-49-6743 
        8.81        29.46        29.75        43.20        15.02        12.13 
TCGA-49-6744 TCGA-49-6745 TCGA-50-5044 TCGA-50-5045 TCGA-50-5049 TCGA-50-5051 
       12.99         4.93        20.48        71.47        48.82        14.96 
TCGA-50-5055 TCGA-50-5066 TCGA-50-5068 TCGA-50-5072 TCGA-50-5930 TCGA-50-5931 
       25.81         9.76        49.28         8.05         9.27         8.78 
TCGA-50-5932 TCGA-50-5933 TCGA-50-5935 TCGA-50-5936 TCGA-50-5939 TCGA-50-5941 
       35.87        77.88        21.47         8.45        15.12         9.37 
TCGA-50-5942 TCGA-50-5944 TCGA-50-5946 TCGA-50-6590 TCGA-50-6591 TCGA-50-6593 
        4.44        12.26        11.47        42.31         3.88        11.05 
TCGA-50-6594 TCGA-50-6595 TCGA-50-6597 TCGA-55-1592 TCGA-55-1594 TCGA-55-1595 
       12.16         6.21        33.37        23.05        38.73        48.62 
TCGA-55-1596 TCGA-55-5899 TCGA-55-6543 TCGA-55-6642 TCGA-55-6712 TCGA-64-1676 
       45.17         2.86         0.07        32.61         0.79        56.81 
TCGA-64-1677 TCGA-64-1678 TCGA-64-1680 TCGA-64-5774 TCGA-64-5775 TCGA-64-5778 
       20.65        39.09        37.02        83.84         0.10        30.44 
TCGA-64-5781 TCGA-64-5815 TCGA-67-3771 TCGA-67-3772 TCGA-67-3773 TCGA-67-3774 
       39.52         7.33         1.97         0.59         2.04         0.59 
TCGA-67-6215 TCGA-67-6216 TCGA-67-6217 TCGA-71-6725 TCGA-73-4658 TCGA-73-4659 
        0.89         0.69        13.87         2.01        52.57        23.38 
TCGA-73-4662 TCGA-73-4666 TCGA-73-4668 TCGA-73-4670 TCGA-73-4675 TCGA-73-4676 
       29.95        20.28        15.35         0.46         1.32         4.01 
TCGA-73-4677 TCGA-91-6828 TCGA-91-6829 TCGA-91-6831 TCGA-91-6835 TCGA-91-6836 
        1.25         1.22        41.33         1.28         1.15         0.36 

  C10ORF71 MUTATED C10ORF71 WILD-TYPE 
              0.99               0.07 
  C10ORF71 MUTATED C10ORF71 WILD-TYPE 
             44.61              85.32 
  C10ORF71 MUTATED C10ORF71 WILD-TYPE 
             19.92              13.15 
[1] "1.0 - 44.6 (19.9)" "0.1 - 85.3 (13.2)"
        TCGA-05-4249         TCGA-05-4250         TCGA-05-4382 
"C10ORF71 WILD-TYPE" "C10ORF71 WILD-TYPE"   "C10ORF71 MUTATED" 
        TCGA-05-4384         TCGA-05-4390         TCGA-05-4396 
"C10ORF71 WILD-TYPE" "C10ORF71 WILD-TYPE" "C10ORF71 WILD-TYPE" 
        TCGA-05-4397         TCGA-05-4398         TCGA-05-4402 
"C10ORF71 WILD-TYPE" "C10ORF71 WILD-TYPE" "C10ORF71 WILD-TYPE" 
        TCGA-05-4405         TCGA-05-4415         TCGA-05-4417 
"C10ORF71 WILD-TYPE" "C10ORF71 WILD-TYPE" "C10ORF71 WILD-TYPE" 
        TCGA-05-4418         TCGA-05-4420         TCGA-05-4424 
"C10ORF71 WILD-TYPE" "C10ORF71 WILD-TYPE" "C10ORF71 WILD-TYPE" 
        TCGA-05-4426         TCGA-05-4427         TCGA-05-4430 
"C10ORF71 WILD-TYPE" "C10ORF71 WILD-TYPE" "C10ORF71 WILD-TYPE" 
        TCGA-05-4432         TCGA-05-4433         TCGA-05-4434 
"C10ORF71 WILD-TYPE" "C10ORF71 WILD-TYPE" "C10ORF71 WILD-TYPE" 
        TCGA-05-5420         TCGA-05-5423         TCGA-05-5425 
"C10ORF71 WILD-TYPE" "C10ORF71 WILD-TYPE" "C10ORF71 WILD-TYPE" 
        TCGA-05-5429         TCGA-05-5715         TCGA-35-3615 
"C10ORF71 WILD-TYPE" "C10ORF71 WILD-TYPE" "C10ORF71 WILD-TYPE" 
        TCGA-35-4122         TCGA-35-4123         TCGA-35-5375 
"C10ORF71 WILD-TYPE" "C10ORF71 WILD-TYPE" "C10ORF71 WILD-TYPE" 
        TCGA-38-4625         TCGA-38-4626         TCGA-38-4627 
"C10ORF71 WILD-TYPE" "C10ORF71 WILD-TYPE" "C10ORF71 WILD-TYPE" 
        TCGA-38-4628         TCGA-38-4629         TCGA-38-4630 
"C10ORF71 WILD-TYPE" "C10ORF71 WILD-TYPE" "C10ORF71 WILD-TYPE" 
        TCGA-38-4631         TCGA-38-4632         TCGA-38-6178 
"C10ORF71 WILD-TYPE"   "C10ORF71 MUTATED" "C10ORF71 WILD-TYPE" 
        TCGA-44-2655         TCGA-44-2656         TCGA-44-2657 
"C10ORF71 WILD-TYPE" "C10ORF71 WILD-TYPE" "C10ORF71 WILD-TYPE" 
        TCGA-44-2659         TCGA-44-2661         TCGA-44-2662 
"C10ORF71 WILD-TYPE" "C10ORF71 WILD-TYPE" "C10ORF71 WILD-TYPE" 
        TCGA-44-2665         TCGA-44-2666         TCGA-44-2668 
"C10ORF71 WILD-TYPE" "C10ORF71 WILD-TYPE" "C10ORF71 WILD-TYPE" 
        TCGA-44-3396         TCGA-44-3398         TCGA-44-3918 
"C10ORF71 WILD-TYPE" "C10ORF71 WILD-TYPE" "C10ORF71 WILD-TYPE" 
        TCGA-44-3919         TCGA-44-4112         TCGA-44-5643 
"C10ORF71 WILD-TYPE" "C10ORF71 WILD-TYPE" "C10ORF71 WILD-TYPE" 
        TCGA-44-5645         TCGA-44-6144         TCGA-44-6145 
"C10ORF71 WILD-TYPE" "C10ORF71 WILD-TYPE" "C10ORF71 WILD-TYPE" 
        TCGA-44-6146         TCGA-44-6147         TCGA-44-6148 
"C10ORF71 WILD-TYPE" "C10ORF71 WILD-TYPE" "C10ORF71 WILD-TYPE" 
        TCGA-44-6774         TCGA-44-6775         TCGA-44-6776 
"C10ORF71 WILD-TYPE" "C10ORF71 WILD-TYPE" "C10ORF71 WILD-TYPE" 
        TCGA-44-6777         TCGA-44-6778         TCGA-44-6779 
"C10ORF71 WILD-TYPE" "C10ORF71 WILD-TYPE" "C10ORF71 WILD-TYPE" 
        TCGA-49-4486         TCGA-49-4487         TCGA-49-4488 
"C10ORF71 WILD-TYPE" "C10ORF71 WILD-TYPE" "C10ORF71 WILD-TYPE" 
        TCGA-49-4490         TCGA-49-4494         TCGA-49-4501 
"C10ORF71 WILD-TYPE" "C10ORF71 WILD-TYPE" "C10ORF71 WILD-TYPE" 
        TCGA-49-4505         TCGA-49-4506         TCGA-49-4507 
"C10ORF71 WILD-TYPE" "C10ORF71 WILD-TYPE" "C10ORF71 WILD-TYPE" 
        TCGA-49-4510         TCGA-49-4512         TCGA-49-4514 
"C10ORF71 WILD-TYPE" "C10ORF71 WILD-TYPE" "C10ORF71 WILD-TYPE" 
        TCGA-49-6742         TCGA-49-6743         TCGA-49-6744 
"C10ORF71 WILD-TYPE" "C10ORF71 WILD-TYPE" "C10ORF71 WILD-TYPE" 
        TCGA-49-6745         TCGA-50-5044         TCGA-50-5045 
"C10ORF71 WILD-TYPE" "C10ORF71 WILD-TYPE" "C10ORF71 WILD-TYPE" 
        TCGA-50-5049         TCGA-50-5051         TCGA-50-5055 
"C10ORF71 WILD-TYPE" "C10ORF71 WILD-TYPE" "C10ORF71 WILD-TYPE" 
        TCGA-50-5066         TCGA-50-5068         TCGA-50-5072 
"C10ORF71 WILD-TYPE" "C10ORF71 WILD-TYPE" "C10ORF71 WILD-TYPE" 
        TCGA-50-5930         TCGA-50-5931         TCGA-50-5932 
"C10ORF71 WILD-TYPE" "C10ORF71 WILD-TYPE" "C10ORF71 WILD-TYPE" 
        TCGA-50-5933         TCGA-50-5935         TCGA-50-5936 
"C10ORF71 WILD-TYPE" "C10ORF71 WILD-TYPE" "C10ORF71 WILD-TYPE" 
        TCGA-50-5939         TCGA-50-5941         TCGA-50-5942 
"C10ORF71 WILD-TYPE" "C10ORF71 WILD-TYPE" "C10ORF71 WILD-TYPE" 
        TCGA-50-5944         TCGA-50-5946         TCGA-50-6590 
"C10ORF71 WILD-TYPE" "C10ORF71 WILD-TYPE" "C10ORF71 WILD-TYPE" 
        TCGA-50-6591         TCGA-50-6592         TCGA-50-6593 
"C10ORF71 WILD-TYPE"   "C10ORF71 MUTATED" "C10ORF71 WILD-TYPE" 
        TCGA-50-6594         TCGA-50-6595         TCGA-50-6597 
"C10ORF71 WILD-TYPE" "C10ORF71 WILD-TYPE" "C10ORF71 WILD-TYPE" 
        TCGA-55-1592         TCGA-55-1594         TCGA-55-1595 
"C10ORF71 WILD-TYPE" "C10ORF71 WILD-TYPE" "C10ORF71 WILD-TYPE" 
        TCGA-55-1596         TCGA-55-5899         TCGA-55-6543 
"C10ORF71 WILD-TYPE" "C10ORF71 WILD-TYPE" "C10ORF71 WILD-TYPE" 
        TCGA-55-6642         TCGA-55-6712         TCGA-64-1676 
"C10ORF71 WILD-TYPE" "C10ORF71 WILD-TYPE" "C10ORF71 WILD-TYPE" 
        TCGA-64-1677         TCGA-64-1678         TCGA-64-1680 
"C10ORF71 WILD-TYPE" "C10ORF71 WILD-TYPE" "C10ORF71 WILD-TYPE" 
        TCGA-64-5774         TCGA-64-5775         TCGA-64-5778 
"C10ORF71 WILD-TYPE" "C10ORF71 WILD-TYPE" "C10ORF71 WILD-TYPE" 
        TCGA-64-5779         TCGA-64-5781         TCGA-64-5815 
  "C10ORF71 MUTATED" "C10ORF71 WILD-TYPE" "C10ORF71 WILD-TYPE" 
        TCGA-67-3770         TCGA-67-3771         TCGA-67-3772 
  "C10ORF71 MUTATED" "C10ORF71 WILD-TYPE" "C10ORF71 WILD-TYPE" 
        TCGA-67-3773         TCGA-67-3774         TCGA-67-6215 
"C10ORF71 WILD-TYPE" "C10ORF71 WILD-TYPE" "C10ORF71 WILD-TYPE" 
        TCGA-67-6216         TCGA-67-6217         TCGA-71-6725 
"C10ORF71 WILD-TYPE" "C10ORF71 WILD-TYPE" "C10ORF71 WILD-TYPE" 
        TCGA-73-4658         TCGA-73-4659         TCGA-73-4662 
"C10ORF71 WILD-TYPE" "C10ORF71 WILD-TYPE" "C10ORF71 WILD-TYPE" 
        TCGA-73-4666         TCGA-73-4668         TCGA-73-4670 
"C10ORF71 WILD-TYPE" "C10ORF71 WILD-TYPE" "C10ORF71 WILD-TYPE" 
        TCGA-73-4675         TCGA-73-4676         TCGA-73-4677 
"C10ORF71 WILD-TYPE" "C10ORF71 WILD-TYPE" "C10ORF71 WILD-TYPE" 
        TCGA-91-6828         TCGA-91-6829         TCGA-91-6831 
"C10ORF71 WILD-TYPE" "C10ORF71 WILD-TYPE" "C10ORF71 WILD-TYPE" 
        TCGA-91-6835         TCGA-91-6836 
"C10ORF71 WILD-TYPE" "C10ORF71 WILD-TYPE" 
        TCGA-05-4249         TCGA-05-4250         TCGA-05-4382 
"C10ORF71 WILD-TYPE" "C10ORF71 WILD-TYPE"   "C10ORF71 MUTATED" 
        TCGA-05-4384         TCGA-05-4390         TCGA-05-4396 
"C10ORF71 WILD-TYPE" "C10ORF71 WILD-TYPE" "C10ORF71 WILD-TYPE" 
        TCGA-05-4397         TCGA-05-4398         TCGA-05-4402 
"C10ORF71 WILD-TYPE" "C10ORF71 WILD-TYPE" "C10ORF71 WILD-TYPE" 
        TCGA-05-4405         TCGA-05-4415         TCGA-05-4417 
"C10ORF71 WILD-TYPE" "C10ORF71 WILD-TYPE" "C10ORF71 WILD-TYPE" 
        TCGA-05-4418         TCGA-05-4420         TCGA-05-4424 
"C10ORF71 WILD-TYPE" "C10ORF71 WILD-TYPE" "C10ORF71 WILD-TYPE" 
        TCGA-05-4426         TCGA-05-4427         TCGA-05-4430 
"C10ORF71 WILD-TYPE" "C10ORF71 WILD-TYPE" "C10ORF71 WILD-TYPE" 
        TCGA-05-4432         TCGA-05-4433         TCGA-05-4434 
"C10ORF71 WILD-TYPE" "C10ORF71 WILD-TYPE" "C10ORF71 WILD-TYPE" 
        TCGA-05-5420         TCGA-05-5423         TCGA-05-5425 
"C10ORF71 WILD-TYPE" "C10ORF71 WILD-TYPE" "C10ORF71 WILD-TYPE" 
        TCGA-05-5429         TCGA-05-5715         TCGA-35-3615 
"C10ORF71 WILD-TYPE" "C10ORF71 WILD-TYPE" "C10ORF71 WILD-TYPE" 
        TCGA-35-4122         TCGA-35-4123         TCGA-35-5375 
"C10ORF71 WILD-TYPE" "C10ORF71 WILD-TYPE" "C10ORF71 WILD-TYPE" 
        TCGA-38-4625         TCGA-38-4626         TCGA-38-4627 
"C10ORF71 WILD-TYPE" "C10ORF71 WILD-TYPE" "C10ORF71 WILD-TYPE" 
        TCGA-38-4628         TCGA-38-4629         TCGA-38-4630 
"C10ORF71 WILD-TYPE" "C10ORF71 WILD-TYPE" "C10ORF71 WILD-TYPE" 
        TCGA-38-4631         TCGA-38-4632         TCGA-38-6178 
"C10ORF71 WILD-TYPE"   "C10ORF71 MUTATED" "C10ORF71 WILD-TYPE" 
        TCGA-44-2655         TCGA-44-2656         TCGA-44-2657 
"C10ORF71 WILD-TYPE" "C10ORF71 WILD-TYPE" "C10ORF71 WILD-TYPE" 
        TCGA-44-2659         TCGA-44-2661         TCGA-44-2662 
"C10ORF71 WILD-TYPE" "C10ORF71 WILD-TYPE" "C10ORF71 WILD-TYPE" 
        TCGA-44-2665         TCGA-44-2666         TCGA-44-2668 
"C10ORF71 WILD-TYPE" "C10ORF71 WILD-TYPE" "C10ORF71 WILD-TYPE" 
        TCGA-44-3396         TCGA-44-3398         TCGA-44-3918 
"C10ORF71 WILD-TYPE" "C10ORF71 WILD-TYPE" "C10ORF71 WILD-TYPE" 
        TCGA-44-3919         TCGA-44-4112         TCGA-44-5643 
"C10ORF71 WILD-TYPE" "C10ORF71 WILD-TYPE" "C10ORF71 WILD-TYPE" 
        TCGA-44-5645         TCGA-44-6144         TCGA-44-6145 
"C10ORF71 WILD-TYPE" "C10ORF71 WILD-TYPE" "C10ORF71 WILD-TYPE" 
        TCGA-44-6146         TCGA-44-6147         TCGA-44-6148 
"C10ORF71 WILD-TYPE" "C10ORF71 WILD-TYPE" "C10ORF71 WILD-TYPE" 
        TCGA-44-6774         TCGA-44-6775         TCGA-44-6776 
"C10ORF71 WILD-TYPE" "C10ORF71 WILD-TYPE" "C10ORF71 WILD-TYPE" 
        TCGA-44-6777         TCGA-44-6778         TCGA-44-6779 
"C10ORF71 WILD-TYPE" "C10ORF71 WILD-TYPE" "C10ORF71 WILD-TYPE" 
        TCGA-49-4486         TCGA-49-4487         TCGA-49-4488 
"C10ORF71 WILD-TYPE" "C10ORF71 WILD-TYPE" "C10ORF71 WILD-TYPE" 
        TCGA-49-4490         TCGA-49-4494         TCGA-49-4501 
"C10ORF71 WILD-TYPE" "C10ORF71 WILD-TYPE" "C10ORF71 WILD-TYPE" 
        TCGA-49-4505         TCGA-49-4506         TCGA-49-4507 
"C10ORF71 WILD-TYPE" "C10ORF71 WILD-TYPE" "C10ORF71 WILD-TYPE" 
        TCGA-49-4510         TCGA-49-4512         TCGA-49-4514 
"C10ORF71 WILD-TYPE" "C10ORF71 WILD-TYPE" "C10ORF71 WILD-TYPE" 
        TCGA-49-6742         TCGA-49-6743         TCGA-49-6744 
"C10ORF71 WILD-TYPE" "C10ORF71 WILD-TYPE" "C10ORF71 WILD-TYPE" 
        TCGA-49-6745         TCGA-50-5044         TCGA-50-5045 
"C10ORF71 WILD-TYPE" "C10ORF71 WILD-TYPE" "C10ORF71 WILD-TYPE" 
        TCGA-50-5049         TCGA-50-5051         TCGA-50-5055 
"C10ORF71 WILD-TYPE" "C10ORF71 WILD-TYPE" "C10ORF71 WILD-TYPE" 
        TCGA-50-5066         TCGA-50-5068         TCGA-50-5072 
"C10ORF71 WILD-TYPE" "C10ORF71 WILD-TYPE" "C10ORF71 WILD-TYPE" 
        TCGA-50-5930         TCGA-50-5931         TCGA-50-5932 
"C10ORF71 WILD-TYPE" "C10ORF71 WILD-TYPE" "C10ORF71 WILD-TYPE" 
        TCGA-50-5933         TCGA-50-5935         TCGA-50-5936 
"C10ORF71 WILD-TYPE" "C10ORF71 WILD-TYPE" "C10ORF71 WILD-TYPE" 
        TCGA-50-5939         TCGA-50-5941         TCGA-50-5942 
"C10ORF71 WILD-TYPE" "C10ORF71 WILD-TYPE" "C10ORF71 WILD-TYPE" 
        TCGA-50-5944         TCGA-50-5946         TCGA-50-6590 
"C10ORF71 WILD-TYPE" "C10ORF71 WILD-TYPE" "C10ORF71 WILD-TYPE" 
        TCGA-50-6591         TCGA-50-6592         TCGA-50-6593 
"C10ORF71 WILD-TYPE"   "C10ORF71 MUTATED" "C10ORF71 WILD-TYPE" 
        TCGA-50-6594         TCGA-50-6595         TCGA-50-6597 
"C10ORF71 WILD-TYPE" "C10ORF71 WILD-TYPE" "C10ORF71 WILD-TYPE" 
        TCGA-55-1592         TCGA-55-1594         TCGA-55-1595 
"C10ORF71 WILD-TYPE" "C10ORF71 WILD-TYPE" "C10ORF71 WILD-TYPE" 
        TCGA-55-1596         TCGA-55-5899         TCGA-55-6543 
"C10ORF71 WILD-TYPE" "C10ORF71 WILD-TYPE" "C10ORF71 WILD-TYPE" 
        TCGA-55-6642         TCGA-55-6712         TCGA-64-1676 
"C10ORF71 WILD-TYPE" "C10ORF71 WILD-TYPE" "C10ORF71 WILD-TYPE" 
        TCGA-64-1677         TCGA-64-1678         TCGA-64-1680 
"C10ORF71 WILD-TYPE" "C10ORF71 WILD-TYPE" "C10ORF71 WILD-TYPE" 
        TCGA-64-5774         TCGA-64-5775         TCGA-64-5778 
"C10ORF71 WILD-TYPE" "C10ORF71 WILD-TYPE" "C10ORF71 WILD-TYPE" 
        TCGA-64-5779         TCGA-64-5781         TCGA-64-5815 
  "C10ORF71 MUTATED" "C10ORF71 WILD-TYPE" "C10ORF71 WILD-TYPE" 
        TCGA-67-3770         TCGA-67-3771         TCGA-67-3772 
  "C10ORF71 MUTATED" "C10ORF71 WILD-TYPE" "C10ORF71 WILD-TYPE" 
        TCGA-67-3773         TCGA-67-3774         TCGA-67-6215 
"C10ORF71 WILD-TYPE" "C10ORF71 WILD-TYPE" "C10ORF71 WILD-TYPE" 
        TCGA-67-6216         TCGA-67-6217         TCGA-71-6725 
"C10ORF71 WILD-TYPE" "C10ORF71 WILD-TYPE" "C10ORF71 WILD-TYPE" 
        TCGA-73-4658         TCGA-73-4659         TCGA-73-4662 
"C10ORF71 WILD-TYPE" "C10ORF71 WILD-TYPE" "C10ORF71 WILD-TYPE" 
        TCGA-73-4666         TCGA-73-4668         TCGA-73-4670 
"C10ORF71 WILD-TYPE" "C10ORF71 WILD-TYPE" "C10ORF71 WILD-TYPE" 
        TCGA-73-4675         TCGA-73-4676         TCGA-73-4677 
"C10ORF71 WILD-TYPE" "C10ORF71 WILD-TYPE" "C10ORF71 WILD-TYPE" 
        TCGA-91-6828         TCGA-91-6829         TCGA-91-6831 
"C10ORF71 WILD-TYPE" "C10ORF71 WILD-TYPE" "C10ORF71 WILD-TYPE" 
        TCGA-91-6835         TCGA-91-6836 
"C10ORF71 WILD-TYPE" "C10ORF71 WILD-TYPE" 
        TCGA-05-4249         TCGA-05-4250         TCGA-05-4382 
"C10ORF71 WILD-TYPE" "C10ORF71 WILD-TYPE"   "C10ORF71 MUTATED" 
        TCGA-05-4384         TCGA-05-4390         TCGA-05-4396 
"C10ORF71 WILD-TYPE" "C10ORF71 WILD-TYPE" "C10ORF71 WILD-TYPE" 
        TCGA-05-4397         TCGA-05-4398         TCGA-05-4402 
"C10ORF71 WILD-TYPE" "C10ORF71 WILD-TYPE" "C10ORF71 WILD-TYPE" 
        TCGA-05-4405         TCGA-05-4415         TCGA-05-4417 
"C10ORF71 WILD-TYPE" "C10ORF71 WILD-TYPE" "C10ORF71 WILD-TYPE" 
        TCGA-05-4418         TCGA-05-4420         TCGA-05-4424 
"C10ORF71 WILD-TYPE" "C10ORF71 WILD-TYPE" "C10ORF71 WILD-TYPE" 
        TCGA-05-4426         TCGA-05-4427         TCGA-05-4430 
"C10ORF71 WILD-TYPE" "C10ORF71 WILD-TYPE" "C10ORF71 WILD-TYPE" 
        TCGA-05-4432         TCGA-05-4433         TCGA-05-4434 
"C10ORF71 WILD-TYPE" "C10ORF71 WILD-TYPE" "C10ORF71 WILD-TYPE" 
        TCGA-05-5420         TCGA-05-5423         TCGA-05-5425 
"C10ORF71 WILD-TYPE" "C10ORF71 WILD-TYPE" "C10ORF71 WILD-TYPE" 
        TCGA-05-5429         TCGA-05-5715         TCGA-35-3615 
"C10ORF71 WILD-TYPE" "C10ORF71 WILD-TYPE" "C10ORF71 WILD-TYPE" 
        TCGA-35-4122         TCGA-35-4123         TCGA-35-5375 
"C10ORF71 WILD-TYPE" "C10ORF71 WILD-TYPE" "C10ORF71 WILD-TYPE" 
        TCGA-38-4625         TCGA-38-4626         TCGA-38-4627 
"C10ORF71 WILD-TYPE" "C10ORF71 WILD-TYPE" "C10ORF71 WILD-TYPE" 
        TCGA-38-4628         TCGA-38-4629         TCGA-38-4630 
"C10ORF71 WILD-TYPE" "C10ORF71 WILD-TYPE" "C10ORF71 WILD-TYPE" 
        TCGA-38-4631         TCGA-38-4632         TCGA-38-6178 
"C10ORF71 WILD-TYPE"   "C10ORF71 MUTATED" "C10ORF71 WILD-TYPE" 
        TCGA-44-2655         TCGA-44-2656         TCGA-44-2657 
"C10ORF71 WILD-TYPE" "C10ORF71 WILD-TYPE" "C10ORF71 WILD-TYPE" 
        TCGA-44-2659         TCGA-44-2661         TCGA-44-2662 
"C10ORF71 WILD-TYPE" "C10ORF71 WILD-TYPE" "C10ORF71 WILD-TYPE" 
        TCGA-44-2665         TCGA-44-2666         TCGA-44-2668 
"C10ORF71 WILD-TYPE" "C10ORF71 WILD-TYPE" "C10ORF71 WILD-TYPE" 
        TCGA-44-3396         TCGA-44-3398         TCGA-44-3918 
"C10ORF71 WILD-TYPE" "C10ORF71 WILD-TYPE" "C10ORF71 WILD-TYPE" 
        TCGA-44-3919         TCGA-44-4112         TCGA-44-5643 
"C10ORF71 WILD-TYPE" "C10ORF71 WILD-TYPE" "C10ORF71 WILD-TYPE" 
        TCGA-44-5645         TCGA-44-6144         TCGA-44-6145 
"C10ORF71 WILD-TYPE" "C10ORF71 WILD-TYPE" "C10ORF71 WILD-TYPE" 
        TCGA-44-6146         TCGA-44-6147         TCGA-44-6148 
"C10ORF71 WILD-TYPE" "C10ORF71 WILD-TYPE" "C10ORF71 WILD-TYPE" 
        TCGA-44-6774         TCGA-44-6775         TCGA-44-6776 
"C10ORF71 WILD-TYPE" "C10ORF71 WILD-TYPE" "C10ORF71 WILD-TYPE" 
        TCGA-44-6777         TCGA-44-6778         TCGA-44-6779 
"C10ORF71 WILD-TYPE" "C10ORF71 WILD-TYPE" "C10ORF71 WILD-TYPE" 
        TCGA-49-4486         TCGA-49-4487         TCGA-49-4488 
"C10ORF71 WILD-TYPE" "C10ORF71 WILD-TYPE" "C10ORF71 WILD-TYPE" 
        TCGA-49-4490         TCGA-49-4494         TCGA-49-4501 
"C10ORF71 WILD-TYPE" "C10ORF71 WILD-TYPE" "C10ORF71 WILD-TYPE" 
        TCGA-49-4505         TCGA-49-4506         TCGA-49-4507 
"C10ORF71 WILD-TYPE" "C10ORF71 WILD-TYPE" "C10ORF71 WILD-TYPE" 
        TCGA-49-4510         TCGA-49-4512         TCGA-49-4514 
"C10ORF71 WILD-TYPE" "C10ORF71 WILD-TYPE" "C10ORF71 WILD-TYPE" 
        TCGA-49-6742         TCGA-49-6743         TCGA-49-6744 
"C10ORF71 WILD-TYPE" "C10ORF71 WILD-TYPE" "C10ORF71 WILD-TYPE" 
        TCGA-49-6745         TCGA-50-5044         TCGA-50-5045 
"C10ORF71 WILD-TYPE" "C10ORF71 WILD-TYPE" "C10ORF71 WILD-TYPE" 
        TCGA-50-5049         TCGA-50-5051         TCGA-50-5055 
"C10ORF71 WILD-TYPE" "C10ORF71 WILD-TYPE" "C10ORF71 WILD-TYPE" 
        TCGA-50-5066         TCGA-50-5068         TCGA-50-5072 
"C10ORF71 WILD-TYPE" "C10ORF71 WILD-TYPE" "C10ORF71 WILD-TYPE" 
        TCGA-50-5930         TCGA-50-5931         TCGA-50-5932 
"C10ORF71 WILD-TYPE" "C10ORF71 WILD-TYPE" "C10ORF71 WILD-TYPE" 
        TCGA-50-5933         TCGA-50-5935         TCGA-50-5936 
"C10ORF71 WILD-TYPE" "C10ORF71 WILD-TYPE" "C10ORF71 WILD-TYPE" 
        TCGA-50-5939         TCGA-50-5941         TCGA-50-5942 
"C10ORF71 WILD-TYPE" "C10ORF71 WILD-TYPE" "C10ORF71 WILD-TYPE" 
        TCGA-50-5944         TCGA-50-5946         TCGA-50-6590 
"C10ORF71 WILD-TYPE" "C10ORF71 WILD-TYPE" "C10ORF71 WILD-TYPE" 
        TCGA-50-6591         TCGA-50-6592         TCGA-50-6593 
"C10ORF71 WILD-TYPE"   "C10ORF71 MUTATED" "C10ORF71 WILD-TYPE" 
        TCGA-50-6594         TCGA-50-6595         TCGA-50-6597 
"C10ORF71 WILD-TYPE" "C10ORF71 WILD-TYPE" "C10ORF71 WILD-TYPE" 
        TCGA-55-1592         TCGA-55-1594         TCGA-55-1595 
"C10ORF71 WILD-TYPE" "C10ORF71 WILD-TYPE" "C10ORF71 WILD-TYPE" 
        TCGA-55-1596         TCGA-55-5899         TCGA-55-6543 
"C10ORF71 WILD-TYPE" "C10ORF71 WILD-TYPE" "C10ORF71 WILD-TYPE" 
        TCGA-55-6642         TCGA-55-6712         TCGA-64-1676 
"C10ORF71 WILD-TYPE" "C10ORF71 WILD-TYPE" "C10ORF71 WILD-TYPE" 
        TCGA-64-1677         TCGA-64-1678         TCGA-64-1680 
"C10ORF71 WILD-TYPE" "C10ORF71 WILD-TYPE" "C10ORF71 WILD-TYPE" 
        TCGA-64-5774         TCGA-64-5775         TCGA-64-5778 
"C10ORF71 WILD-TYPE" "C10ORF71 WILD-TYPE" "C10ORF71 WILD-TYPE" 
        TCGA-64-5779         TCGA-64-5781         TCGA-64-5815 
  "C10ORF71 MUTATED" "C10ORF71 WILD-TYPE" "C10ORF71 WILD-TYPE" 
        TCGA-67-3770         TCGA-67-3771         TCGA-67-3772 
  "C10ORF71 MUTATED" "C10ORF71 WILD-TYPE" "C10ORF71 WILD-TYPE" 
        TCGA-67-3773         TCGA-67-3774         TCGA-67-6215 
"C10ORF71 WILD-TYPE" "C10ORF71 WILD-TYPE" "C10ORF71 WILD-TYPE" 
        TCGA-67-6216         TCGA-67-6217         TCGA-71-6725 
"C10ORF71 WILD-TYPE" "C10ORF71 WILD-TYPE" "C10ORF71 WILD-TYPE" 
        TCGA-73-4658         TCGA-73-4659         TCGA-73-4662 
"C10ORF71 WILD-TYPE" "C10ORF71 WILD-TYPE" "C10ORF71 WILD-TYPE" 
        TCGA-73-4666         TCGA-73-4668         TCGA-73-4670 
"C10ORF71 WILD-TYPE" "C10ORF71 WILD-TYPE" "C10ORF71 WILD-TYPE" 
        TCGA-73-4675         TCGA-73-4676         TCGA-73-4677 
"C10ORF71 WILD-TYPE" "C10ORF71 WILD-TYPE" "C10ORF71 WILD-TYPE" 
        TCGA-91-6828         TCGA-91-6829         TCGA-91-6831 
"C10ORF71 WILD-TYPE" "C10ORF71 WILD-TYPE" "C10ORF71 WILD-TYPE" 
        TCGA-91-6835         TCGA-91-6836 
"C10ORF71 WILD-TYPE" "C10ORF71 WILD-TYPE" 
[1] "hr=" "1.2"
D276V2, continuous
D276V3, binary
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  C10ORF71 MUTATED      2    4
  C10ORF71 WILD-TYPE   91   75
        clus
vv       C10ORF71 MUTATED C10ORF71 WILD-TYPE
  FEMALE                2                 91
  MALE                  4                 75
D276V4, continuous
D276V5, multiclass
D276V6, multiclass
    clus
vv   C10ORF71 MUTATED C10ORF71 WILD-TYPE
  T1                1                 40
  T2                5                103
  T3                0                 14
  T4                0                  8
D276V7, multiclass
       clus
vv      C10ORF71 MUTATED C10ORF71 WILD-TYPE
  N0                   4                 91
  N1                   1                 36
  N2+N3                1                 34
D276V8, multiclass
    clus
vv   C10ORF71 MUTATED C10ORF71 WILD-TYPE
  M0                5                132
  M1                1                  8
  MX                0                 22
D276V9, multiclass
     clus
vv    C10ORF71 MUTATED C10ORF71 WILD-TYPE
  I                  4                 84
  II                 0                 33
  III                1                 38
  IV                 1                  8
D276V10, binary
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  C10ORF71 MUTATED      0    6
  C10ORF71 WILD-TYPE   16  150
     clus
vv    C10ORF71 MUTATED C10ORF71 WILD-TYPE
  NO                 0                 16
  YES                6                150
D276V11, continuous
D276V12, continuous
D276V13, multiclass
                                             clus
vv                                            C10ORF71 MUTATED
  CURRENT REFORMED SMOKER FOR < OR = 15 YEARS                5
  CURRENT REFORMED SMOKER FOR > 15 YEARS                     1
  CURRENT SMOKER                                             0
  LIFELONG NON-SMOKER                                        0
                                             clus
vv                                            C10ORF71 WILD-TYPE
  CURRENT REFORMED SMOKER FOR < OR = 15 YEARS                 57
  CURRENT REFORMED SMOKER FOR > 15 YEARS                      45
  CURRENT SMOKER                                              28
  LIFELONG NON-SMOKER                                         24
D276V14, continuous
[1] "Remove cluster labels:" "C10ORF71 MUTATED"      
clus
  C10ORF71 MUTATED C10ORF71 WILD-TYPE 
                 2                 66 
        TCGA-05-4384         TCGA-05-4390         TCGA-05-4396 
"C10ORF71 WILD-TYPE" "C10ORF71 WILD-TYPE" "C10ORF71 WILD-TYPE" 
        TCGA-05-4405         TCGA-05-4415         TCGA-05-4417 
"C10ORF71 WILD-TYPE" "C10ORF71 WILD-TYPE" "C10ORF71 WILD-TYPE" 
        TCGA-05-4424         TCGA-05-4427         TCGA-05-4433 
"C10ORF71 WILD-TYPE" "C10ORF71 WILD-TYPE" "C10ORF71 WILD-TYPE" 
        TCGA-05-5420         TCGA-05-5423         TCGA-05-5425 
"C10ORF71 WILD-TYPE" "C10ORF71 WILD-TYPE" "C10ORF71 WILD-TYPE" 
        TCGA-05-5428         TCGA-35-4122         TCGA-35-4123 
"C10ORF71 WILD-TYPE" "C10ORF71 WILD-TYPE" "C10ORF71 WILD-TYPE" 
        TCGA-35-5375         TCGA-38-4625         TCGA-38-4626 
"C10ORF71 WILD-TYPE" "C10ORF71 WILD-TYPE" "C10ORF71 WILD-TYPE" 
        TCGA-44-2655         TCGA-44-2656         TCGA-44-2657 
"C10ORF71 WILD-TYPE" "C10ORF71 WILD-TYPE" "C10ORF71 WILD-TYPE" 
        TCGA-44-2659         TCGA-44-2662         TCGA-44-2666 
"C10ORF71 WILD-TYPE" "C10ORF71 WILD-TYPE" "C10ORF71 WILD-TYPE" 
        TCGA-44-2668         TCGA-44-3396         TCGA-44-3398 
"C10ORF71 WILD-TYPE" "C10ORF71 WILD-TYPE" "C10ORF71 WILD-TYPE" 
        TCGA-44-3918         TCGA-44-4112         TCGA-44-5645 
"C10ORF71 WILD-TYPE" "C10ORF71 WILD-TYPE" "C10ORF71 WILD-TYPE" 
        TCGA-44-6144         TCGA-44-6145         TCGA-44-6147 
"C10ORF71 WILD-TYPE" "C10ORF71 WILD-TYPE" "C10ORF71 WILD-TYPE" 
        TCGA-44-6148         TCGA-44-6774         TCGA-44-6775 
"C10ORF71 WILD-TYPE" "C10ORF71 WILD-TYPE" "C10ORF71 WILD-TYPE" 
        TCGA-44-6776         TCGA-44-6777         TCGA-44-6778 
"C10ORF71 WILD-TYPE" "C10ORF71 WILD-TYPE" "C10ORF71 WILD-TYPE" 
        TCGA-44-6779         TCGA-49-4486         TCGA-49-4494 
"C10ORF71 WILD-TYPE" "C10ORF71 WILD-TYPE" "C10ORF71 WILD-TYPE" 
        TCGA-49-4505         TCGA-55-1592         TCGA-55-1594 
"C10ORF71 WILD-TYPE" "C10ORF71 WILD-TYPE" "C10ORF71 WILD-TYPE" 
        TCGA-55-1595         TCGA-55-1596         TCGA-55-5899 
"C10ORF71 WILD-TYPE" "C10ORF71 WILD-TYPE" "C10ORF71 WILD-TYPE" 
        TCGA-55-6642         TCGA-55-6712         TCGA-64-1677 
"C10ORF71 WILD-TYPE" "C10ORF71 WILD-TYPE" "C10ORF71 WILD-TYPE" 
        TCGA-64-1678         TCGA-64-1680         TCGA-64-5774 
"C10ORF71 WILD-TYPE" "C10ORF71 WILD-TYPE" "C10ORF71 WILD-TYPE" 
        TCGA-64-5775         TCGA-64-5778         TCGA-64-5781 
"C10ORF71 WILD-TYPE" "C10ORF71 WILD-TYPE" "C10ORF71 WILD-TYPE" 
        TCGA-73-4659         TCGA-73-4662         TCGA-73-4666 
"C10ORF71 WILD-TYPE" "C10ORF71 WILD-TYPE" "C10ORF71 WILD-TYPE" 
        TCGA-73-4668         TCGA-73-4670         TCGA-73-4675 
"C10ORF71 WILD-TYPE" "C10ORF71 WILD-TYPE" "C10ORF71 WILD-TYPE" 
        TCGA-73-4676         TCGA-91-6829         TCGA-91-6836 
"C10ORF71 WILD-TYPE" "C10ORF71 WILD-TYPE" "C10ORF71 WILD-TYPE" 

Clustering(277) Variable = NFKBID MUTATION ANALYSIS
D277V1, survival
                  sevent
clus2               0  1
  NFKBID MUTATED    2  2
  NFKBID WILD-TYPE 97 48
  NFKBID MUTATED NFKBID WILD-TYPE 
               4              145 
  NFKBID MUTATED NFKBID WILD-TYPE 
               2               48 
$`NFKBID MUTATED`
TCGA-44-6776 TCGA-50-5066 TCGA-50-6590 TCGA-50-6593 
       63.72         9.76        42.31        11.05 

$`NFKBID WILD-TYPE`
TCGA-05-4249 TCGA-05-4250 TCGA-05-4382 TCGA-05-4384 TCGA-05-4390 TCGA-05-4396 
       38.07         3.98        19.92        14.01        37.02         9.96 
TCGA-05-4397 TCGA-05-4398 TCGA-05-4402 TCGA-05-4405 TCGA-05-4415 TCGA-05-4417 
       24.03        47.05         8.02        20.05         2.96        14.93 
TCGA-05-4418 TCGA-05-4420 TCGA-05-4424 TCGA-05-4426 TCGA-05-4427 TCGA-05-4430 
        8.98        29.95        30.02        26.01        26.01        25.02 
TCGA-05-4432 TCGA-05-4433 TCGA-05-4434 TCGA-05-5420 TCGA-05-5423 TCGA-05-5425 
       25.02        24.00        15.02         1.02         4.96         2.96 
TCGA-05-5429 TCGA-05-5715 TCGA-35-3615 TCGA-35-4122 TCGA-35-4123 TCGA-35-5375 
        0.99         2.04         0.46         7.36         5.95         8.68 
TCGA-38-4625 TCGA-38-4626 TCGA-38-4627 TCGA-38-4628 TCGA-38-4629 TCGA-38-4630 
       47.61        85.32        37.71        49.02        28.37        35.28 
TCGA-38-4631 TCGA-38-4632 TCGA-38-6178 TCGA-44-2655 TCGA-44-2656 TCGA-44-2657 
       11.64        44.61         5.19        18.87        19.10        13.15 
TCGA-44-2659 TCGA-44-2661 TCGA-44-2662 TCGA-44-2665 TCGA-44-2666 TCGA-44-2668 
       17.39         3.39        15.78        13.15         3.19         8.09 
TCGA-44-3396 TCGA-44-3398 TCGA-44-3918 TCGA-44-3919 TCGA-44-4112 TCGA-44-5643 
       10.22         8.32         6.44         6.21         4.60         3.48 
TCGA-44-5645 TCGA-44-6144 TCGA-44-6145 TCGA-44-6146 TCGA-44-6147 TCGA-44-6148 
        6.84         0.30         3.35         9.93         7.76         3.12 
TCGA-44-6774 TCGA-44-6775 TCGA-44-6777 TCGA-44-6778 TCGA-44-6779 TCGA-49-4486 
        5.42         2.70        32.45        36.49        16.41        76.21 
TCGA-49-4487 TCGA-49-4488 TCGA-49-4490 TCGA-49-4494 TCGA-49-4501 TCGA-49-4505 
       28.11        28.57        12.66        35.54        46.72        14.07 
TCGA-49-4506 TCGA-49-4507 TCGA-49-4510 TCGA-49-4512 TCGA-49-4514 TCGA-49-6742 
       32.84         8.81        29.46        29.75        43.20        15.02 
TCGA-49-6743 TCGA-49-6744 TCGA-49-6745 TCGA-50-5044 TCGA-50-5045 TCGA-50-5049 
       12.13        12.99         4.93        20.48        71.47        48.82 
TCGA-50-5051 TCGA-50-5055 TCGA-50-5068 TCGA-50-5072 TCGA-50-5930 TCGA-50-5931 
       14.96        25.81        49.28         8.05         9.27         8.78 
TCGA-50-5932 TCGA-50-5933 TCGA-50-5935 TCGA-50-5936 TCGA-50-5939 TCGA-50-5941 
       35.87        77.88        21.47         8.45        15.12         9.37 
TCGA-50-5942 TCGA-50-5944 TCGA-50-5946 TCGA-50-6591 TCGA-50-6592 TCGA-50-6594 
        4.44        12.26        11.47         3.88        25.51        12.16 
TCGA-50-6595 TCGA-50-6597 TCGA-55-1592 TCGA-55-1594 TCGA-55-1595 TCGA-55-1596 
        6.21        33.37        23.05        38.73        48.62        45.17 
TCGA-55-5899 TCGA-55-6543 TCGA-55-6642 TCGA-55-6712 TCGA-64-1676 TCGA-64-1677 
        2.86         0.07        32.61         0.79        56.81        20.65 
TCGA-64-1678 TCGA-64-1680 TCGA-64-5774 TCGA-64-5775 TCGA-64-5778 TCGA-64-5779 
       39.09        37.02        83.84         0.10        30.44        16.67 
TCGA-64-5781 TCGA-64-5815 TCGA-67-3770 TCGA-67-3771 TCGA-67-3772 TCGA-67-3773 
       39.52         7.33         0.99         1.97         0.59         2.04 
TCGA-67-3774 TCGA-67-6215 TCGA-67-6216 TCGA-67-6217 TCGA-71-6725 TCGA-73-4658 
        0.59         0.89         0.69        13.87         2.01        52.57 
TCGA-73-4659 TCGA-73-4662 TCGA-73-4666 TCGA-73-4668 TCGA-73-4670 TCGA-73-4675 
       23.38        29.95        20.28        15.35         0.46         1.32 
TCGA-73-4676 TCGA-73-4677 TCGA-91-6828 TCGA-91-6829 TCGA-91-6831 TCGA-91-6835 
        4.01         1.25         1.22        41.33         1.28         1.15 
TCGA-91-6836 
        0.36 

  NFKBID MUTATED NFKBID WILD-TYPE 
            9.76             0.07 
  NFKBID MUTATED NFKBID WILD-TYPE 
           63.72            85.32 
  NFKBID MUTATED NFKBID WILD-TYPE 
           26.68            13.87 
[1] "9.8 - 63.7 (26.7)" "0.1 - 85.3 (13.9)"
      TCGA-05-4249       TCGA-05-4250       TCGA-05-4382       TCGA-05-4384 
"NFKBID WILD-TYPE" "NFKBID WILD-TYPE" "NFKBID WILD-TYPE" "NFKBID WILD-TYPE" 
      TCGA-05-4390       TCGA-05-4396       TCGA-05-4397       TCGA-05-4398 
"NFKBID WILD-TYPE" "NFKBID WILD-TYPE" "NFKBID WILD-TYPE" "NFKBID WILD-TYPE" 
      TCGA-05-4402       TCGA-05-4405       TCGA-05-4415       TCGA-05-4417 
"NFKBID WILD-TYPE" "NFKBID WILD-TYPE" "NFKBID WILD-TYPE" "NFKBID WILD-TYPE" 
      TCGA-05-4418       TCGA-05-4420       TCGA-05-4424       TCGA-05-4426 
"NFKBID WILD-TYPE" "NFKBID WILD-TYPE" "NFKBID WILD-TYPE" "NFKBID WILD-TYPE" 
      TCGA-05-4427       TCGA-05-4430       TCGA-05-4432       TCGA-05-4433 
"NFKBID WILD-TYPE" "NFKBID WILD-TYPE" "NFKBID WILD-TYPE" "NFKBID WILD-TYPE" 
      TCGA-05-4434       TCGA-05-5420       TCGA-05-5423       TCGA-05-5425 
"NFKBID WILD-TYPE" "NFKBID WILD-TYPE" "NFKBID WILD-TYPE" "NFKBID WILD-TYPE" 
      TCGA-05-5429       TCGA-05-5715       TCGA-35-3615       TCGA-35-4122 
"NFKBID WILD-TYPE" "NFKBID WILD-TYPE" "NFKBID WILD-TYPE" "NFKBID WILD-TYPE" 
      TCGA-35-4123       TCGA-35-5375       TCGA-38-4625       TCGA-38-4626 
"NFKBID WILD-TYPE" "NFKBID WILD-TYPE" "NFKBID WILD-TYPE" "NFKBID WILD-TYPE" 
      TCGA-38-4627       TCGA-38-4628       TCGA-38-4629       TCGA-38-4630 
"NFKBID WILD-TYPE" "NFKBID WILD-TYPE" "NFKBID WILD-TYPE" "NFKBID WILD-TYPE" 
      TCGA-38-4631       TCGA-38-4632       TCGA-38-6178       TCGA-44-2655 
"NFKBID WILD-TYPE" "NFKBID WILD-TYPE" "NFKBID WILD-TYPE" "NFKBID WILD-TYPE" 
      TCGA-44-2656       TCGA-44-2657       TCGA-44-2659       TCGA-44-2661 
"NFKBID WILD-TYPE" "NFKBID WILD-TYPE" "NFKBID WILD-TYPE" "NFKBID WILD-TYPE" 
      TCGA-44-2662       TCGA-44-2665       TCGA-44-2666       TCGA-44-2668 
"NFKBID WILD-TYPE" "NFKBID WILD-TYPE" "NFKBID WILD-TYPE" "NFKBID WILD-TYPE" 
      TCGA-44-3396       TCGA-44-3398       TCGA-44-3918       TCGA-44-3919 
"NFKBID WILD-TYPE" "NFKBID WILD-TYPE" "NFKBID WILD-TYPE" "NFKBID WILD-TYPE" 
      TCGA-44-4112       TCGA-44-5643       TCGA-44-5645       TCGA-44-6144 
"NFKBID WILD-TYPE" "NFKBID WILD-TYPE" "NFKBID WILD-TYPE" "NFKBID WILD-TYPE" 
      TCGA-44-6145       TCGA-44-6146       TCGA-44-6147       TCGA-44-6148 
"NFKBID WILD-TYPE" "NFKBID WILD-TYPE" "NFKBID WILD-TYPE" "NFKBID WILD-TYPE" 
      TCGA-44-6774       TCGA-44-6775       TCGA-44-6776       TCGA-44-6777 
"NFKBID WILD-TYPE" "NFKBID WILD-TYPE"   "NFKBID MUTATED" "NFKBID WILD-TYPE" 
      TCGA-44-6778       TCGA-44-6779       TCGA-49-4486       TCGA-49-4487 
"NFKBID WILD-TYPE" "NFKBID WILD-TYPE" "NFKBID WILD-TYPE" "NFKBID WILD-TYPE" 
      TCGA-49-4488       TCGA-49-4490       TCGA-49-4494       TCGA-49-4501 
"NFKBID WILD-TYPE" "NFKBID WILD-TYPE" "NFKBID WILD-TYPE" "NFKBID WILD-TYPE" 
      TCGA-49-4505       TCGA-49-4506       TCGA-49-4507       TCGA-49-4510 
"NFKBID WILD-TYPE" "NFKBID WILD-TYPE" "NFKBID WILD-TYPE" "NFKBID WILD-TYPE" 
      TCGA-49-4512       TCGA-49-4514       TCGA-49-6742       TCGA-49-6743 
"NFKBID WILD-TYPE" "NFKBID WILD-TYPE" "NFKBID WILD-TYPE" "NFKBID WILD-TYPE" 
      TCGA-49-6744       TCGA-49-6745       TCGA-50-5044       TCGA-50-5045 
"NFKBID WILD-TYPE" "NFKBID WILD-TYPE" "NFKBID WILD-TYPE" "NFKBID WILD-TYPE" 
      TCGA-50-5049       TCGA-50-5051       TCGA-50-5055       TCGA-50-5066 
"NFKBID WILD-TYPE" "NFKBID WILD-TYPE" "NFKBID WILD-TYPE"   "NFKBID MUTATED" 
      TCGA-50-5068       TCGA-50-5072       TCGA-50-5930       TCGA-50-5931 
"NFKBID WILD-TYPE" "NFKBID WILD-TYPE" "NFKBID WILD-TYPE" "NFKBID WILD-TYPE" 
      TCGA-50-5932       TCGA-50-5933       TCGA-50-5935       TCGA-50-5936 
"NFKBID WILD-TYPE" "NFKBID WILD-TYPE" "NFKBID WILD-TYPE" "NFKBID WILD-TYPE" 
      TCGA-50-5939       TCGA-50-5941       TCGA-50-5942       TCGA-50-5944 
"NFKBID WILD-TYPE" "NFKBID WILD-TYPE" "NFKBID WILD-TYPE" "NFKBID WILD-TYPE" 
      TCGA-50-5946       TCGA-50-6590       TCGA-50-6591       TCGA-50-6592 
"NFKBID WILD-TYPE"   "NFKBID MUTATED" "NFKBID WILD-TYPE" "NFKBID WILD-TYPE" 
      TCGA-50-6593       TCGA-50-6594       TCGA-50-6595       TCGA-50-6597 
  "NFKBID MUTATED" "NFKBID WILD-TYPE" "NFKBID WILD-TYPE" "NFKBID WILD-TYPE" 
      TCGA-55-1592       TCGA-55-1594       TCGA-55-1595       TCGA-55-1596 
"NFKBID WILD-TYPE" "NFKBID WILD-TYPE" "NFKBID WILD-TYPE" "NFKBID WILD-TYPE" 
      TCGA-55-5899       TCGA-55-6543       TCGA-55-6642       TCGA-55-6712 
"NFKBID WILD-TYPE" "NFKBID WILD-TYPE" "NFKBID WILD-TYPE" "NFKBID WILD-TYPE" 
      TCGA-64-1676       TCGA-64-1677       TCGA-64-1678       TCGA-64-1680 
"NFKBID WILD-TYPE" "NFKBID WILD-TYPE" "NFKBID WILD-TYPE" "NFKBID WILD-TYPE" 
      TCGA-64-5774       TCGA-64-5775       TCGA-64-5778       TCGA-64-5779 
"NFKBID WILD-TYPE" "NFKBID WILD-TYPE" "NFKBID WILD-TYPE" "NFKBID WILD-TYPE" 
      TCGA-64-5781       TCGA-64-5815       TCGA-67-3770       TCGA-67-3771 
"NFKBID WILD-TYPE" "NFKBID WILD-TYPE" "NFKBID WILD-TYPE" "NFKBID WILD-TYPE" 
      TCGA-67-3772       TCGA-67-3773       TCGA-67-3774       TCGA-67-6215 
"NFKBID WILD-TYPE" "NFKBID WILD-TYPE" "NFKBID WILD-TYPE" "NFKBID WILD-TYPE" 
      TCGA-67-6216       TCGA-67-6217       TCGA-71-6725       TCGA-73-4658 
"NFKBID WILD-TYPE" "NFKBID WILD-TYPE" "NFKBID WILD-TYPE" "NFKBID WILD-TYPE" 
      TCGA-73-4659       TCGA-73-4662       TCGA-73-4666       TCGA-73-4668 
"NFKBID WILD-TYPE" "NFKBID WILD-TYPE" "NFKBID WILD-TYPE" "NFKBID WILD-TYPE" 
      TCGA-73-4670       TCGA-73-4675       TCGA-73-4676       TCGA-73-4677 
"NFKBID WILD-TYPE" "NFKBID WILD-TYPE" "NFKBID WILD-TYPE" "NFKBID WILD-TYPE" 
      TCGA-91-6828       TCGA-91-6829       TCGA-91-6831       TCGA-91-6835 
"NFKBID WILD-TYPE" "NFKBID WILD-TYPE" "NFKBID WILD-TYPE" "NFKBID WILD-TYPE" 
      TCGA-91-6836 
"NFKBID WILD-TYPE" 
      TCGA-05-4249       TCGA-05-4250       TCGA-05-4382       TCGA-05-4384 
"NFKBID WILD-TYPE" "NFKBID WILD-TYPE" "NFKBID WILD-TYPE" "NFKBID WILD-TYPE" 
      TCGA-05-4390       TCGA-05-4396       TCGA-05-4397       TCGA-05-4398 
"NFKBID WILD-TYPE" "NFKBID WILD-TYPE" "NFKBID WILD-TYPE" "NFKBID WILD-TYPE" 
      TCGA-05-4402       TCGA-05-4405       TCGA-05-4415       TCGA-05-4417 
"NFKBID WILD-TYPE" "NFKBID WILD-TYPE" "NFKBID WILD-TYPE" "NFKBID WILD-TYPE" 
      TCGA-05-4418       TCGA-05-4420       TCGA-05-4424       TCGA-05-4426 
"NFKBID WILD-TYPE" "NFKBID WILD-TYPE" "NFKBID WILD-TYPE" "NFKBID WILD-TYPE" 
      TCGA-05-4427       TCGA-05-4430       TCGA-05-4432       TCGA-05-4433 
"NFKBID WILD-TYPE" "NFKBID WILD-TYPE" "NFKBID WILD-TYPE" "NFKBID WILD-TYPE" 
      TCGA-05-4434       TCGA-05-5420       TCGA-05-5423       TCGA-05-5425 
"NFKBID WILD-TYPE" "NFKBID WILD-TYPE" "NFKBID WILD-TYPE" "NFKBID WILD-TYPE" 
      TCGA-05-5429       TCGA-05-5715       TCGA-35-3615       TCGA-35-4122 
"NFKBID WILD-TYPE" "NFKBID WILD-TYPE" "NFKBID WILD-TYPE" "NFKBID WILD-TYPE" 
      TCGA-35-4123       TCGA-35-5375       TCGA-38-4625       TCGA-38-4626 
"NFKBID WILD-TYPE" "NFKBID WILD-TYPE" "NFKBID WILD-TYPE" "NFKBID WILD-TYPE" 
      TCGA-38-4627       TCGA-38-4628       TCGA-38-4629       TCGA-38-4630 
"NFKBID WILD-TYPE" "NFKBID WILD-TYPE" "NFKBID WILD-TYPE" "NFKBID WILD-TYPE" 
      TCGA-38-4631       TCGA-38-4632       TCGA-38-6178       TCGA-44-2655 
"NFKBID WILD-TYPE" "NFKBID WILD-TYPE" "NFKBID WILD-TYPE" "NFKBID WILD-TYPE" 
      TCGA-44-2656       TCGA-44-2657       TCGA-44-2659       TCGA-44-2661 
"NFKBID WILD-TYPE" "NFKBID WILD-TYPE" "NFKBID WILD-TYPE" "NFKBID WILD-TYPE" 
      TCGA-44-2662       TCGA-44-2665       TCGA-44-2666       TCGA-44-2668 
"NFKBID WILD-TYPE" "NFKBID WILD-TYPE" "NFKBID WILD-TYPE" "NFKBID WILD-TYPE" 
      TCGA-44-3396       TCGA-44-3398       TCGA-44-3918       TCGA-44-3919 
"NFKBID WILD-TYPE" "NFKBID WILD-TYPE" "NFKBID WILD-TYPE" "NFKBID WILD-TYPE" 
      TCGA-44-4112       TCGA-44-5643       TCGA-44-5645       TCGA-44-6144 
"NFKBID WILD-TYPE" "NFKBID WILD-TYPE" "NFKBID WILD-TYPE" "NFKBID WILD-TYPE" 
      TCGA-44-6145       TCGA-44-6146       TCGA-44-6147       TCGA-44-6148 
"NFKBID WILD-TYPE" "NFKBID WILD-TYPE" "NFKBID WILD-TYPE" "NFKBID WILD-TYPE" 
      TCGA-44-6774       TCGA-44-6775       TCGA-44-6776       TCGA-44-6777 
"NFKBID WILD-TYPE" "NFKBID WILD-TYPE"   "NFKBID MUTATED" "NFKBID WILD-TYPE" 
      TCGA-44-6778       TCGA-44-6779       TCGA-49-4486       TCGA-49-4487 
"NFKBID WILD-TYPE" "NFKBID WILD-TYPE" "NFKBID WILD-TYPE" "NFKBID WILD-TYPE" 
      TCGA-49-4488       TCGA-49-4490       TCGA-49-4494       TCGA-49-4501 
"NFKBID WILD-TYPE" "NFKBID WILD-TYPE" "NFKBID WILD-TYPE" "NFKBID WILD-TYPE" 
      TCGA-49-4505       TCGA-49-4506       TCGA-49-4507       TCGA-49-4510 
"NFKBID WILD-TYPE" "NFKBID WILD-TYPE" "NFKBID WILD-TYPE" "NFKBID WILD-TYPE" 
      TCGA-49-4512       TCGA-49-4514       TCGA-49-6742       TCGA-49-6743 
"NFKBID WILD-TYPE" "NFKBID WILD-TYPE" "NFKBID WILD-TYPE" "NFKBID WILD-TYPE" 
      TCGA-49-6744       TCGA-49-6745       TCGA-50-5044       TCGA-50-5045 
"NFKBID WILD-TYPE" "NFKBID WILD-TYPE" "NFKBID WILD-TYPE" "NFKBID WILD-TYPE" 
      TCGA-50-5049       TCGA-50-5051       TCGA-50-5055       TCGA-50-5066 
"NFKBID WILD-TYPE" "NFKBID WILD-TYPE" "NFKBID WILD-TYPE"   "NFKBID MUTATED" 
      TCGA-50-5068       TCGA-50-5072       TCGA-50-5930       TCGA-50-5931 
"NFKBID WILD-TYPE" "NFKBID WILD-TYPE" "NFKBID WILD-TYPE" "NFKBID WILD-TYPE" 
      TCGA-50-5932       TCGA-50-5933       TCGA-50-5935       TCGA-50-5936 
"NFKBID WILD-TYPE" "NFKBID WILD-TYPE" "NFKBID WILD-TYPE" "NFKBID WILD-TYPE" 
      TCGA-50-5939       TCGA-50-5941       TCGA-50-5942       TCGA-50-5944 
"NFKBID WILD-TYPE" "NFKBID WILD-TYPE" "NFKBID WILD-TYPE" "NFKBID WILD-TYPE" 
      TCGA-50-5946       TCGA-50-6590       TCGA-50-6591       TCGA-50-6592 
"NFKBID WILD-TYPE"   "NFKBID MUTATED" "NFKBID WILD-TYPE" "NFKBID WILD-TYPE" 
      TCGA-50-6593       TCGA-50-6594       TCGA-50-6595       TCGA-50-6597 
  "NFKBID MUTATED" "NFKBID WILD-TYPE" "NFKBID WILD-TYPE" "NFKBID WILD-TYPE" 
      TCGA-55-1592       TCGA-55-1594       TCGA-55-1595       TCGA-55-1596 
"NFKBID WILD-TYPE" "NFKBID WILD-TYPE" "NFKBID WILD-TYPE" "NFKBID WILD-TYPE" 
      TCGA-55-5899       TCGA-55-6543       TCGA-55-6642       TCGA-55-6712 
"NFKBID WILD-TYPE" "NFKBID WILD-TYPE" "NFKBID WILD-TYPE" "NFKBID WILD-TYPE" 
      TCGA-64-1676       TCGA-64-1677       TCGA-64-1678       TCGA-64-1680 
"NFKBID WILD-TYPE" "NFKBID WILD-TYPE" "NFKBID WILD-TYPE" "NFKBID WILD-TYPE" 
      TCGA-64-5774       TCGA-64-5775       TCGA-64-5778       TCGA-64-5779 
"NFKBID WILD-TYPE" "NFKBID WILD-TYPE" "NFKBID WILD-TYPE" "NFKBID WILD-TYPE" 
      TCGA-64-5781       TCGA-64-5815       TCGA-67-3770       TCGA-67-3771 
"NFKBID WILD-TYPE" "NFKBID WILD-TYPE" "NFKBID WILD-TYPE" "NFKBID WILD-TYPE" 
      TCGA-67-3772       TCGA-67-3773       TCGA-67-3774       TCGA-67-6215 
"NFKBID WILD-TYPE" "NFKBID WILD-TYPE" "NFKBID WILD-TYPE" "NFKBID WILD-TYPE" 
      TCGA-67-6216       TCGA-67-6217       TCGA-71-6725       TCGA-73-4658 
"NFKBID WILD-TYPE" "NFKBID WILD-TYPE" "NFKBID WILD-TYPE" "NFKBID WILD-TYPE" 
      TCGA-73-4659       TCGA-73-4662       TCGA-73-4666       TCGA-73-4668 
"NFKBID WILD-TYPE" "NFKBID WILD-TYPE" "NFKBID WILD-TYPE" "NFKBID WILD-TYPE" 
      TCGA-73-4670       TCGA-73-4675       TCGA-73-4676       TCGA-73-4677 
"NFKBID WILD-TYPE" "NFKBID WILD-TYPE" "NFKBID WILD-TYPE" "NFKBID WILD-TYPE" 
      TCGA-91-6828       TCGA-91-6829       TCGA-91-6831       TCGA-91-6835 
"NFKBID WILD-TYPE" "NFKBID WILD-TYPE" "NFKBID WILD-TYPE" "NFKBID WILD-TYPE" 
      TCGA-91-6836 
"NFKBID WILD-TYPE" 
      TCGA-05-4249       TCGA-05-4250       TCGA-05-4382       TCGA-05-4384 
"NFKBID WILD-TYPE" "NFKBID WILD-TYPE" "NFKBID WILD-TYPE" "NFKBID WILD-TYPE" 
      TCGA-05-4390       TCGA-05-4396       TCGA-05-4397       TCGA-05-4398 
"NFKBID WILD-TYPE" "NFKBID WILD-TYPE" "NFKBID WILD-TYPE" "NFKBID WILD-TYPE" 
      TCGA-05-4402       TCGA-05-4405       TCGA-05-4415       TCGA-05-4417 
"NFKBID WILD-TYPE" "NFKBID WILD-TYPE" "NFKBID WILD-TYPE" "NFKBID WILD-TYPE" 
      TCGA-05-4418       TCGA-05-4420       TCGA-05-4424       TCGA-05-4426 
"NFKBID WILD-TYPE" "NFKBID WILD-TYPE" "NFKBID WILD-TYPE" "NFKBID WILD-TYPE" 
      TCGA-05-4427       TCGA-05-4430       TCGA-05-4432       TCGA-05-4433 
"NFKBID WILD-TYPE" "NFKBID WILD-TYPE" "NFKBID WILD-TYPE" "NFKBID WILD-TYPE" 
      TCGA-05-4434       TCGA-05-5420       TCGA-05-5423       TCGA-05-5425 
"NFKBID WILD-TYPE" "NFKBID WILD-TYPE" "NFKBID WILD-TYPE" "NFKBID WILD-TYPE" 
      TCGA-05-5429       TCGA-05-5715       TCGA-35-3615       TCGA-35-4122 
"NFKBID WILD-TYPE" "NFKBID WILD-TYPE" "NFKBID WILD-TYPE" "NFKBID WILD-TYPE" 
      TCGA-35-4123       TCGA-35-5375       TCGA-38-4625       TCGA-38-4626 
"NFKBID WILD-TYPE" "NFKBID WILD-TYPE" "NFKBID WILD-TYPE" "NFKBID WILD-TYPE" 
      TCGA-38-4627       TCGA-38-4628       TCGA-38-4629       TCGA-38-4630 
"NFKBID WILD-TYPE" "NFKBID WILD-TYPE" "NFKBID WILD-TYPE" "NFKBID WILD-TYPE" 
      TCGA-38-4631       TCGA-38-4632       TCGA-38-6178       TCGA-44-2655 
"NFKBID WILD-TYPE" "NFKBID WILD-TYPE" "NFKBID WILD-TYPE" "NFKBID WILD-TYPE" 
      TCGA-44-2656       TCGA-44-2657       TCGA-44-2659       TCGA-44-2661 
"NFKBID WILD-TYPE" "NFKBID WILD-TYPE" "NFKBID WILD-TYPE" "NFKBID WILD-TYPE" 
      TCGA-44-2662       TCGA-44-2665       TCGA-44-2666       TCGA-44-2668 
"NFKBID WILD-TYPE" "NFKBID WILD-TYPE" "NFKBID WILD-TYPE" "NFKBID WILD-TYPE" 
      TCGA-44-3396       TCGA-44-3398       TCGA-44-3918       TCGA-44-3919 
"NFKBID WILD-TYPE" "NFKBID WILD-TYPE" "NFKBID WILD-TYPE" "NFKBID WILD-TYPE" 
      TCGA-44-4112       TCGA-44-5643       TCGA-44-5645       TCGA-44-6144 
"NFKBID WILD-TYPE" "NFKBID WILD-TYPE" "NFKBID WILD-TYPE" "NFKBID WILD-TYPE" 
      TCGA-44-6145       TCGA-44-6146       TCGA-44-6147       TCGA-44-6148 
"NFKBID WILD-TYPE" "NFKBID WILD-TYPE" "NFKBID WILD-TYPE" "NFKBID WILD-TYPE" 
      TCGA-44-6774       TCGA-44-6775       TCGA-44-6776       TCGA-44-6777 
"NFKBID WILD-TYPE" "NFKBID WILD-TYPE"   "NFKBID MUTATED" "NFKBID WILD-TYPE" 
      TCGA-44-6778       TCGA-44-6779       TCGA-49-4486       TCGA-49-4487 
"NFKBID WILD-TYPE" "NFKBID WILD-TYPE" "NFKBID WILD-TYPE" "NFKBID WILD-TYPE" 
      TCGA-49-4488       TCGA-49-4490       TCGA-49-4494       TCGA-49-4501 
"NFKBID WILD-TYPE" "NFKBID WILD-TYPE" "NFKBID WILD-TYPE" "NFKBID WILD-TYPE" 
      TCGA-49-4505       TCGA-49-4506       TCGA-49-4507       TCGA-49-4510 
"NFKBID WILD-TYPE" "NFKBID WILD-TYPE" "NFKBID WILD-TYPE" "NFKBID WILD-TYPE" 
      TCGA-49-4512       TCGA-49-4514       TCGA-49-6742       TCGA-49-6743 
"NFKBID WILD-TYPE" "NFKBID WILD-TYPE" "NFKBID WILD-TYPE" "NFKBID WILD-TYPE" 
      TCGA-49-6744       TCGA-49-6745       TCGA-50-5044       TCGA-50-5045 
"NFKBID WILD-TYPE" "NFKBID WILD-TYPE" "NFKBID WILD-TYPE" "NFKBID WILD-TYPE" 
      TCGA-50-5049       TCGA-50-5051       TCGA-50-5055       TCGA-50-5066 
"NFKBID WILD-TYPE" "NFKBID WILD-TYPE" "NFKBID WILD-TYPE"   "NFKBID MUTATED" 
      TCGA-50-5068       TCGA-50-5072       TCGA-50-5930       TCGA-50-5931 
"NFKBID WILD-TYPE" "NFKBID WILD-TYPE" "NFKBID WILD-TYPE" "NFKBID WILD-TYPE" 
      TCGA-50-5932       TCGA-50-5933       TCGA-50-5935       TCGA-50-5936 
"NFKBID WILD-TYPE" "NFKBID WILD-TYPE" "NFKBID WILD-TYPE" "NFKBID WILD-TYPE" 
      TCGA-50-5939       TCGA-50-5941       TCGA-50-5942       TCGA-50-5944 
"NFKBID WILD-TYPE" "NFKBID WILD-TYPE" "NFKBID WILD-TYPE" "NFKBID WILD-TYPE" 
      TCGA-50-5946       TCGA-50-6590       TCGA-50-6591       TCGA-50-6592 
"NFKBID WILD-TYPE"   "NFKBID MUTATED" "NFKBID WILD-TYPE" "NFKBID WILD-TYPE" 
      TCGA-50-6593       TCGA-50-6594       TCGA-50-6595       TCGA-50-6597 
  "NFKBID MUTATED" "NFKBID WILD-TYPE" "NFKBID WILD-TYPE" "NFKBID WILD-TYPE" 
      TCGA-55-1592       TCGA-55-1594       TCGA-55-1595       TCGA-55-1596 
"NFKBID WILD-TYPE" "NFKBID WILD-TYPE" "NFKBID WILD-TYPE" "NFKBID WILD-TYPE" 
      TCGA-55-5899       TCGA-55-6543       TCGA-55-6642       TCGA-55-6712 
"NFKBID WILD-TYPE" "NFKBID WILD-TYPE" "NFKBID WILD-TYPE" "NFKBID WILD-TYPE" 
      TCGA-64-1676       TCGA-64-1677       TCGA-64-1678       TCGA-64-1680 
"NFKBID WILD-TYPE" "NFKBID WILD-TYPE" "NFKBID WILD-TYPE" "NFKBID WILD-TYPE" 
      TCGA-64-5774       TCGA-64-5775       TCGA-64-5778       TCGA-64-5779 
"NFKBID WILD-TYPE" "NFKBID WILD-TYPE" "NFKBID WILD-TYPE" "NFKBID WILD-TYPE" 
      TCGA-64-5781       TCGA-64-5815       TCGA-67-3770       TCGA-67-3771 
"NFKBID WILD-TYPE" "NFKBID WILD-TYPE" "NFKBID WILD-TYPE" "NFKBID WILD-TYPE" 
      TCGA-67-3772       TCGA-67-3773       TCGA-67-3774       TCGA-67-6215 
"NFKBID WILD-TYPE" "NFKBID WILD-TYPE" "NFKBID WILD-TYPE" "NFKBID WILD-TYPE" 
      TCGA-67-6216       TCGA-67-6217       TCGA-71-6725       TCGA-73-4658 
"NFKBID WILD-TYPE" "NFKBID WILD-TYPE" "NFKBID WILD-TYPE" "NFKBID WILD-TYPE" 
      TCGA-73-4659       TCGA-73-4662       TCGA-73-4666       TCGA-73-4668 
"NFKBID WILD-TYPE" "NFKBID WILD-TYPE" "NFKBID WILD-TYPE" "NFKBID WILD-TYPE" 
      TCGA-73-4670       TCGA-73-4675       TCGA-73-4676       TCGA-73-4677 
"NFKBID WILD-TYPE" "NFKBID WILD-TYPE" "NFKBID WILD-TYPE" "NFKBID WILD-TYPE" 
      TCGA-91-6828       TCGA-91-6829       TCGA-91-6831       TCGA-91-6835 
"NFKBID WILD-TYPE" "NFKBID WILD-TYPE" "NFKBID WILD-TYPE" "NFKBID WILD-TYPE" 
      TCGA-91-6836 
"NFKBID WILD-TYPE" 
[1] "hr=" "1.2"
D277V2, continuous
D277V3, binary
[1] "tbl2"
                  cls
clus               [,1] [,2]
  NFKBID MUTATED      4    1
  NFKBID WILD-TYPE   89   78
        clus
vv       NFKBID MUTATED NFKBID WILD-TYPE
  FEMALE              4               89
  MALE                1               78
D277V4, continuous
D277V5, multiclass
D277V6, multiclass
    clus
vv   NFKBID MUTATED NFKBID WILD-TYPE
  T1              2               39
  T2              3              105
  T3              0               14
  T4              0                8
D277V7, multiclass
       clus
vv      NFKBID MUTATED NFKBID WILD-TYPE
  N0                 4               91
  N1                 0               37
  N2+N3              1               34
D277V8, multiclass
    clus
vv   NFKBID MUTATED NFKBID WILD-TYPE
  M0              4              133
  M1              0                9
  MX              1               21
D277V9, multiclass
     clus
vv    NFKBID MUTATED NFKBID WILD-TYPE
  I                4               84
  II               0               33
  III              1               38
  IV               0                9
D277V10, binary
[1] "tbl2"
                  cls
clus               [,1] [,2]
  NFKBID MUTATED      0    5
  NFKBID WILD-TYPE   16  151
     clus
vv    NFKBID MUTATED NFKBID WILD-TYPE
  NO               0               16
  YES              5              151
D277V11, continuous
D277V12, continuous
[1] "Remove cluster labels:" "NFKBID MUTATED"        
clus
  NFKBID MUTATED NFKBID WILD-TYPE 
               2               80 
      TCGA-05-4384       TCGA-05-4390       TCGA-05-4396       TCGA-05-4403 
"NFKBID WILD-TYPE" "NFKBID WILD-TYPE" "NFKBID WILD-TYPE" "NFKBID WILD-TYPE" 
      TCGA-05-4405       TCGA-05-4410       TCGA-05-4415       TCGA-05-4417 
"NFKBID WILD-TYPE" "NFKBID WILD-TYPE" "NFKBID WILD-TYPE" "NFKBID WILD-TYPE" 
      TCGA-05-4424       TCGA-05-4427       TCGA-05-4433       TCGA-05-5420 
"NFKBID WILD-TYPE" "NFKBID WILD-TYPE" "NFKBID WILD-TYPE" "NFKBID WILD-TYPE" 
      TCGA-05-5423       TCGA-05-5425       TCGA-05-5428       TCGA-35-4122 
"NFKBID WILD-TYPE" "NFKBID WILD-TYPE" "NFKBID WILD-TYPE" "NFKBID WILD-TYPE" 
      TCGA-35-4123       TCGA-35-5375       TCGA-38-4629       TCGA-38-4632 
"NFKBID WILD-TYPE" "NFKBID WILD-TYPE" "NFKBID WILD-TYPE" "NFKBID WILD-TYPE" 
      TCGA-44-2655       TCGA-44-2656       TCGA-44-2657       TCGA-44-2659 
"NFKBID WILD-TYPE" "NFKBID WILD-TYPE" "NFKBID WILD-TYPE" "NFKBID WILD-TYPE" 
      TCGA-44-2662       TCGA-44-2668       TCGA-44-3398       TCGA-44-3918 
"NFKBID WILD-TYPE" "NFKBID WILD-TYPE" "NFKBID WILD-TYPE" "NFKBID WILD-TYPE" 
      TCGA-44-4112       TCGA-44-5645       TCGA-44-6145       TCGA-44-6146 
"NFKBID WILD-TYPE" "NFKBID WILD-TYPE" "NFKBID WILD-TYPE" "NFKBID WILD-TYPE" 
      TCGA-44-6147       TCGA-44-6148       TCGA-44-6775       TCGA-44-6777 
"NFKBID WILD-TYPE" "NFKBID WILD-TYPE" "NFKBID WILD-TYPE" "NFKBID WILD-TYPE" 
      TCGA-44-6778       TCGA-44-6779       TCGA-49-4486       TCGA-49-4488 
"NFKBID WILD-TYPE" "NFKBID WILD-TYPE" "NFKBID WILD-TYPE" "NFKBID WILD-TYPE" 
      TCGA-49-4494       TCGA-49-4505       TCGA-49-4507       TCGA-50-5051 
"NFKBID WILD-TYPE" "NFKBID WILD-TYPE" "NFKBID WILD-TYPE" "NFKBID WILD-TYPE" 
      TCGA-50-5072       TCGA-50-5939       TCGA-50-5942       TCGA-50-5946 
"NFKBID WILD-TYPE" "NFKBID WILD-TYPE" "NFKBID WILD-TYPE" "NFKBID WILD-TYPE" 
      TCGA-50-6594       TCGA-50-6595       TCGA-55-1592       TCGA-55-1595 
"NFKBID WILD-TYPE" "NFKBID WILD-TYPE" "NFKBID WILD-TYPE" "NFKBID WILD-TYPE" 
      TCGA-55-6543       TCGA-55-6712       TCGA-64-1678       TCGA-64-1680 
"NFKBID WILD-TYPE" "NFKBID WILD-TYPE" "NFKBID WILD-TYPE" "NFKBID WILD-TYPE" 
      TCGA-64-5774       TCGA-64-5778       TCGA-64-5779       TCGA-64-5781 
"NFKBID WILD-TYPE" "NFKBID WILD-TYPE" "NFKBID WILD-TYPE" "NFKBID WILD-TYPE" 
      TCGA-64-5815       TCGA-67-6217       TCGA-73-4659       TCGA-73-4662 
"NFKBID WILD-TYPE" "NFKBID WILD-TYPE" "NFKBID WILD-TYPE" "NFKBID WILD-TYPE" 
      TCGA-73-4666       TCGA-73-4668       TCGA-73-4670       TCGA-73-4675 
"NFKBID WILD-TYPE" "NFKBID WILD-TYPE" "NFKBID WILD-TYPE" "NFKBID WILD-TYPE" 
      TCGA-73-4676       TCGA-73-4677       TCGA-75-5122       TCGA-75-5125 
"NFKBID WILD-TYPE" "NFKBID WILD-TYPE" "NFKBID WILD-TYPE" "NFKBID WILD-TYPE" 
      TCGA-75-5126       TCGA-75-5146       TCGA-75-6206       TCGA-75-6207 
"NFKBID WILD-TYPE" "NFKBID WILD-TYPE" "NFKBID WILD-TYPE" "NFKBID WILD-TYPE" 
      TCGA-80-5611       TCGA-91-6828       TCGA-91-6829       TCGA-91-6835 
"NFKBID WILD-TYPE" "NFKBID WILD-TYPE" "NFKBID WILD-TYPE" "NFKBID WILD-TYPE" 
D277V13, multiclass
                                             clus
vv                                            NFKBID MUTATED NFKBID WILD-TYPE
  CURRENT REFORMED SMOKER FOR < OR = 15 YEARS              3               59
  CURRENT REFORMED SMOKER FOR > 15 YEARS                   0               46
  CURRENT SMOKER                                           1               27
  LIFELONG NON-SMOKER                                      1               23
D277V14, continuous
[1] "Remove cluster labels:" "NFKBID MUTATED"        
clus
  NFKBID MUTATED NFKBID WILD-TYPE 
               1               67 
      TCGA-05-4384       TCGA-05-4390       TCGA-05-4396       TCGA-05-4405 
"NFKBID WILD-TYPE" "NFKBID WILD-TYPE" "NFKBID WILD-TYPE" "NFKBID WILD-TYPE" 
      TCGA-05-4410       TCGA-05-4415       TCGA-05-4417       TCGA-05-4424 
"NFKBID WILD-TYPE" "NFKBID WILD-TYPE" "NFKBID WILD-TYPE" "NFKBID WILD-TYPE" 
      TCGA-05-4427       TCGA-05-4433       TCGA-05-5420       TCGA-05-5423 
"NFKBID WILD-TYPE" "NFKBID WILD-TYPE" "NFKBID WILD-TYPE" "NFKBID WILD-TYPE" 
      TCGA-05-5425       TCGA-05-5428       TCGA-35-4122       TCGA-35-4123 
"NFKBID WILD-TYPE" "NFKBID WILD-TYPE" "NFKBID WILD-TYPE" "NFKBID WILD-TYPE" 
      TCGA-35-5375       TCGA-38-4625       TCGA-38-4626       TCGA-44-2655 
"NFKBID WILD-TYPE" "NFKBID WILD-TYPE" "NFKBID WILD-TYPE" "NFKBID WILD-TYPE" 
      TCGA-44-2656       TCGA-44-2657       TCGA-44-2659       TCGA-44-2662 
"NFKBID WILD-TYPE" "NFKBID WILD-TYPE" "NFKBID WILD-TYPE" "NFKBID WILD-TYPE" 
      TCGA-44-2666       TCGA-44-2668       TCGA-44-3396       TCGA-44-3398 
"NFKBID WILD-TYPE" "NFKBID WILD-TYPE" "NFKBID WILD-TYPE" "NFKBID WILD-TYPE" 
      TCGA-44-3918       TCGA-44-4112       TCGA-44-5645       TCGA-44-6144 
"NFKBID WILD-TYPE" "NFKBID WILD-TYPE" "NFKBID WILD-TYPE" "NFKBID WILD-TYPE" 
      TCGA-44-6145       TCGA-44-6147       TCGA-44-6148       TCGA-44-6774 
"NFKBID WILD-TYPE" "NFKBID WILD-TYPE" "NFKBID WILD-TYPE" "NFKBID WILD-TYPE" 
      TCGA-44-6775       TCGA-44-6777       TCGA-44-6778       TCGA-44-6779 
"NFKBID WILD-TYPE" "NFKBID WILD-TYPE" "NFKBID WILD-TYPE" "NFKBID WILD-TYPE" 
      TCGA-49-4486       TCGA-49-4494       TCGA-49-4505       TCGA-55-1592 
"NFKBID WILD-TYPE" "NFKBID WILD-TYPE" "NFKBID WILD-TYPE" "NFKBID WILD-TYPE" 
      TCGA-55-1594       TCGA-55-1595       TCGA-55-1596       TCGA-55-5899 
"NFKBID WILD-TYPE" "NFKBID WILD-TYPE" "NFKBID WILD-TYPE" "NFKBID WILD-TYPE" 
      TCGA-55-6642       TCGA-55-6712       TCGA-64-1677       TCGA-64-1678 
"NFKBID WILD-TYPE" "NFKBID WILD-TYPE" "NFKBID WILD-TYPE" "NFKBID WILD-TYPE" 
      TCGA-64-1680       TCGA-64-5774       TCGA-64-5775       TCGA-64-5778 
"NFKBID WILD-TYPE" "NFKBID WILD-TYPE" "NFKBID WILD-TYPE" "NFKBID WILD-TYPE" 
      TCGA-64-5779       TCGA-64-5781       TCGA-73-4659       TCGA-73-4662 
"NFKBID WILD-TYPE" "NFKBID WILD-TYPE" "NFKBID WILD-TYPE" "NFKBID WILD-TYPE" 
      TCGA-73-4666       TCGA-73-4668       TCGA-73-4670       TCGA-73-4675 
"NFKBID WILD-TYPE" "NFKBID WILD-TYPE" "NFKBID WILD-TYPE" "NFKBID WILD-TYPE" 
      TCGA-73-4676       TCGA-91-6829       TCGA-91-6836 
"NFKBID WILD-TYPE" "NFKBID WILD-TYPE" "NFKBID WILD-TYPE" 

Clustering(278) Variable = CLVS2 MUTATION ANALYSIS
D278V1, survival
                 sevent
clus2              0  1
  CLVS2 MUTATED    1  3
  CLVS2 WILD-TYPE 98 47
  CLVS2 MUTATED CLVS2 WILD-TYPE 
              4             145 
  CLVS2 MUTATED CLVS2 WILD-TYPE 
              3              47 
$`CLVS2 MUTATED`
TCGA-05-4396 TCGA-05-4415 TCGA-38-4625 TCGA-50-6590 
        9.96         2.96        47.61        42.31 

$`CLVS2 WILD-TYPE`
TCGA-05-4249 TCGA-05-4250 TCGA-05-4382 TCGA-05-4384 TCGA-05-4390 TCGA-05-4397 
       38.07         3.98        19.92        14.01        37.02        24.03 
TCGA-05-4398 TCGA-05-4402 TCGA-05-4405 TCGA-05-4417 TCGA-05-4418 TCGA-05-4420 
       47.05         8.02        20.05        14.93         8.98        29.95 
TCGA-05-4424 TCGA-05-4426 TCGA-05-4427 TCGA-05-4430 TCGA-05-4432 TCGA-05-4433 
       30.02        26.01        26.01        25.02        25.02        24.00 
TCGA-05-4434 TCGA-05-5420 TCGA-05-5423 TCGA-05-5425 TCGA-05-5429 TCGA-05-5715 
       15.02         1.02         4.96         2.96         0.99         2.04 
TCGA-35-3615 TCGA-35-4122 TCGA-35-4123 TCGA-35-5375 TCGA-38-4626 TCGA-38-4627 
        0.46         7.36         5.95         8.68        85.32        37.71 
TCGA-38-4628 TCGA-38-4629 TCGA-38-4630 TCGA-38-4631 TCGA-38-4632 TCGA-38-6178 
       49.02        28.37        35.28        11.64        44.61         5.19 
TCGA-44-2655 TCGA-44-2656 TCGA-44-2657 TCGA-44-2659 TCGA-44-2661 TCGA-44-2662 
       18.87        19.10        13.15        17.39         3.39        15.78 
TCGA-44-2665 TCGA-44-2666 TCGA-44-2668 TCGA-44-3396 TCGA-44-3398 TCGA-44-3918 
       13.15         3.19         8.09        10.22         8.32         6.44 
TCGA-44-3919 TCGA-44-4112 TCGA-44-5643 TCGA-44-5645 TCGA-44-6144 TCGA-44-6145 
        6.21         4.60         3.48         6.84         0.30         3.35 
TCGA-44-6146 TCGA-44-6147 TCGA-44-6148 TCGA-44-6774 TCGA-44-6775 TCGA-44-6776 
        9.93         7.76         3.12         5.42         2.70        63.72 
TCGA-44-6777 TCGA-44-6778 TCGA-44-6779 TCGA-49-4486 TCGA-49-4487 TCGA-49-4488 
       32.45        36.49        16.41        76.21        28.11        28.57 
TCGA-49-4490 TCGA-49-4494 TCGA-49-4501 TCGA-49-4505 TCGA-49-4506 TCGA-49-4507 
       12.66        35.54        46.72        14.07        32.84         8.81 
TCGA-49-4510 TCGA-49-4512 TCGA-49-4514 TCGA-49-6742 TCGA-49-6743 TCGA-49-6744 
       29.46        29.75        43.20        15.02        12.13        12.99 
TCGA-49-6745 TCGA-50-5044 TCGA-50-5045 TCGA-50-5049 TCGA-50-5051 TCGA-50-5055 
        4.93        20.48        71.47        48.82        14.96        25.81 
TCGA-50-5066 TCGA-50-5068 TCGA-50-5072 TCGA-50-5930 TCGA-50-5931 TCGA-50-5932 
        9.76        49.28         8.05         9.27         8.78        35.87 
TCGA-50-5933 TCGA-50-5935 TCGA-50-5936 TCGA-50-5939 TCGA-50-5941 TCGA-50-5942 
       77.88        21.47         8.45        15.12         9.37         4.44 
TCGA-50-5944 TCGA-50-5946 TCGA-50-6591 TCGA-50-6592 TCGA-50-6593 TCGA-50-6594 
       12.26        11.47         3.88        25.51        11.05        12.16 
TCGA-50-6595 TCGA-50-6597 TCGA-55-1592 TCGA-55-1594 TCGA-55-1595 TCGA-55-1596 
        6.21        33.37        23.05        38.73        48.62        45.17 
TCGA-55-5899 TCGA-55-6543 TCGA-55-6642 TCGA-55-6712 TCGA-64-1676 TCGA-64-1677 
        2.86         0.07        32.61         0.79        56.81        20.65 
TCGA-64-1678 TCGA-64-1680 TCGA-64-5774 TCGA-64-5775 TCGA-64-5778 TCGA-64-5779 
       39.09        37.02        83.84         0.10        30.44        16.67 
TCGA-64-5781 TCGA-64-5815 TCGA-67-3770 TCGA-67-3771 TCGA-67-3772 TCGA-67-3773 
       39.52         7.33         0.99         1.97         0.59         2.04 
TCGA-67-3774 TCGA-67-6215 TCGA-67-6216 TCGA-67-6217 TCGA-71-6725 TCGA-73-4658 
        0.59         0.89         0.69        13.87         2.01        52.57 
TCGA-73-4659 TCGA-73-4662 TCGA-73-4666 TCGA-73-4668 TCGA-73-4670 TCGA-73-4675 
       23.38        29.95        20.28        15.35         0.46         1.32 
TCGA-73-4676 TCGA-73-4677 TCGA-91-6828 TCGA-91-6829 TCGA-91-6831 TCGA-91-6835 
        4.01         1.25         1.22        41.33         1.28         1.15 
TCGA-91-6836 
        0.36 

  CLVS2 MUTATED CLVS2 WILD-TYPE 
           2.96            0.07 
  CLVS2 MUTATED CLVS2 WILD-TYPE 
          47.61           85.32 
  CLVS2 MUTATED CLVS2 WILD-TYPE 
         26.135          13.870 
[1] "3.0 - 47.6 (26.1)" "0.1 - 85.3 (13.9)"
     TCGA-05-4249      TCGA-05-4250      TCGA-05-4382      TCGA-05-4384 
"CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE" 
     TCGA-05-4390      TCGA-05-4396      TCGA-05-4397      TCGA-05-4398 
"CLVS2 WILD-TYPE"   "CLVS2 MUTATED" "CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE" 
     TCGA-05-4402      TCGA-05-4405      TCGA-05-4415      TCGA-05-4417 
"CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE"   "CLVS2 MUTATED" "CLVS2 WILD-TYPE" 
     TCGA-05-4418      TCGA-05-4420      TCGA-05-4424      TCGA-05-4426 
"CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE" 
     TCGA-05-4427      TCGA-05-4430      TCGA-05-4432      TCGA-05-4433 
"CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE" 
     TCGA-05-4434      TCGA-05-5420      TCGA-05-5423      TCGA-05-5425 
"CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE" 
     TCGA-05-5429      TCGA-05-5715      TCGA-35-3615      TCGA-35-4122 
"CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE" 
     TCGA-35-4123      TCGA-35-5375      TCGA-38-4625      TCGA-38-4626 
"CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE"   "CLVS2 MUTATED" "CLVS2 WILD-TYPE" 
     TCGA-38-4627      TCGA-38-4628      TCGA-38-4629      TCGA-38-4630 
"CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE" 
     TCGA-38-4631      TCGA-38-4632      TCGA-38-6178      TCGA-44-2655 
"CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE" 
     TCGA-44-2656      TCGA-44-2657      TCGA-44-2659      TCGA-44-2661 
"CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE" 
     TCGA-44-2662      TCGA-44-2665      TCGA-44-2666      TCGA-44-2668 
"CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE" 
     TCGA-44-3396      TCGA-44-3398      TCGA-44-3918      TCGA-44-3919 
"CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE" 
     TCGA-44-4112      TCGA-44-5643      TCGA-44-5645      TCGA-44-6144 
"CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE" 
     TCGA-44-6145      TCGA-44-6146      TCGA-44-6147      TCGA-44-6148 
"CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE" 
     TCGA-44-6774      TCGA-44-6775      TCGA-44-6776      TCGA-44-6777 
"CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE" 
     TCGA-44-6778      TCGA-44-6779      TCGA-49-4486      TCGA-49-4487 
"CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE" 
     TCGA-49-4488      TCGA-49-4490      TCGA-49-4494      TCGA-49-4501 
"CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE" 
     TCGA-49-4505      TCGA-49-4506      TCGA-49-4507      TCGA-49-4510 
"CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE" 
     TCGA-49-4512      TCGA-49-4514      TCGA-49-6742      TCGA-49-6743 
"CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE" 
     TCGA-49-6744      TCGA-49-6745      TCGA-50-5044      TCGA-50-5045 
"CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE" 
     TCGA-50-5049      TCGA-50-5051      TCGA-50-5055      TCGA-50-5066 
"CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE" 
     TCGA-50-5068      TCGA-50-5072      TCGA-50-5930      TCGA-50-5931 
"CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE" 
     TCGA-50-5932      TCGA-50-5933      TCGA-50-5935      TCGA-50-5936 
"CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE" 
     TCGA-50-5939      TCGA-50-5941      TCGA-50-5942      TCGA-50-5944 
"CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE" 
     TCGA-50-5946      TCGA-50-6590      TCGA-50-6591      TCGA-50-6592 
"CLVS2 WILD-TYPE"   "CLVS2 MUTATED" "CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE" 
     TCGA-50-6593      TCGA-50-6594      TCGA-50-6595      TCGA-50-6597 
"CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE" 
     TCGA-55-1592      TCGA-55-1594      TCGA-55-1595      TCGA-55-1596 
"CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE" 
     TCGA-55-5899      TCGA-55-6543      TCGA-55-6642      TCGA-55-6712 
"CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE" 
     TCGA-64-1676      TCGA-64-1677      TCGA-64-1678      TCGA-64-1680 
"CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE" 
     TCGA-64-5774      TCGA-64-5775      TCGA-64-5778      TCGA-64-5779 
"CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE" 
     TCGA-64-5781      TCGA-64-5815      TCGA-67-3770      TCGA-67-3771 
"CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE" 
     TCGA-67-3772      TCGA-67-3773      TCGA-67-3774      TCGA-67-6215 
"CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE" 
     TCGA-67-6216      TCGA-67-6217      TCGA-71-6725      TCGA-73-4658 
"CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE" 
     TCGA-73-4659      TCGA-73-4662      TCGA-73-4666      TCGA-73-4668 
"CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE" 
     TCGA-73-4670      TCGA-73-4675      TCGA-73-4676      TCGA-73-4677 
"CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE" 
     TCGA-91-6828      TCGA-91-6829      TCGA-91-6831      TCGA-91-6835 
"CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE" 
     TCGA-91-6836 
"CLVS2 WILD-TYPE" 
     TCGA-05-4249      TCGA-05-4250      TCGA-05-4382      TCGA-05-4384 
"CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE" 
     TCGA-05-4390      TCGA-05-4396      TCGA-05-4397      TCGA-05-4398 
"CLVS2 WILD-TYPE"   "CLVS2 MUTATED" "CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE" 
     TCGA-05-4402      TCGA-05-4405      TCGA-05-4415      TCGA-05-4417 
"CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE"   "CLVS2 MUTATED" "CLVS2 WILD-TYPE" 
     TCGA-05-4418      TCGA-05-4420      TCGA-05-4424      TCGA-05-4426 
"CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE" 
     TCGA-05-4427      TCGA-05-4430      TCGA-05-4432      TCGA-05-4433 
"CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE" 
     TCGA-05-4434      TCGA-05-5420      TCGA-05-5423      TCGA-05-5425 
"CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE" 
     TCGA-05-5429      TCGA-05-5715      TCGA-35-3615      TCGA-35-4122 
"CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE" 
     TCGA-35-4123      TCGA-35-5375      TCGA-38-4625      TCGA-38-4626 
"CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE"   "CLVS2 MUTATED" "CLVS2 WILD-TYPE" 
     TCGA-38-4627      TCGA-38-4628      TCGA-38-4629      TCGA-38-4630 
"CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE" 
     TCGA-38-4631      TCGA-38-4632      TCGA-38-6178      TCGA-44-2655 
"CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE" 
     TCGA-44-2656      TCGA-44-2657      TCGA-44-2659      TCGA-44-2661 
"CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE" 
     TCGA-44-2662      TCGA-44-2665      TCGA-44-2666      TCGA-44-2668 
"CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE" 
     TCGA-44-3396      TCGA-44-3398      TCGA-44-3918      TCGA-44-3919 
"CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE" 
     TCGA-44-4112      TCGA-44-5643      TCGA-44-5645      TCGA-44-6144 
"CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE" 
     TCGA-44-6145      TCGA-44-6146      TCGA-44-6147      TCGA-44-6148 
"CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE" 
     TCGA-44-6774      TCGA-44-6775      TCGA-44-6776      TCGA-44-6777 
"CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE" 
     TCGA-44-6778      TCGA-44-6779      TCGA-49-4486      TCGA-49-4487 
"CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE" 
     TCGA-49-4488      TCGA-49-4490      TCGA-49-4494      TCGA-49-4501 
"CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE" 
     TCGA-49-4505      TCGA-49-4506      TCGA-49-4507      TCGA-49-4510 
"CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE" 
     TCGA-49-4512      TCGA-49-4514      TCGA-49-6742      TCGA-49-6743 
"CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE" 
     TCGA-49-6744      TCGA-49-6745      TCGA-50-5044      TCGA-50-5045 
"CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE" 
     TCGA-50-5049      TCGA-50-5051      TCGA-50-5055      TCGA-50-5066 
"CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE" 
     TCGA-50-5068      TCGA-50-5072      TCGA-50-5930      TCGA-50-5931 
"CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE" 
     TCGA-50-5932      TCGA-50-5933      TCGA-50-5935      TCGA-50-5936 
"CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE" 
     TCGA-50-5939      TCGA-50-5941      TCGA-50-5942      TCGA-50-5944 
"CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE" 
     TCGA-50-5946      TCGA-50-6590      TCGA-50-6591      TCGA-50-6592 
"CLVS2 WILD-TYPE"   "CLVS2 MUTATED" "CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE" 
     TCGA-50-6593      TCGA-50-6594      TCGA-50-6595      TCGA-50-6597 
"CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE" 
     TCGA-55-1592      TCGA-55-1594      TCGA-55-1595      TCGA-55-1596 
"CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE" 
     TCGA-55-5899      TCGA-55-6543      TCGA-55-6642      TCGA-55-6712 
"CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE" 
     TCGA-64-1676      TCGA-64-1677      TCGA-64-1678      TCGA-64-1680 
"CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE" 
     TCGA-64-5774      TCGA-64-5775      TCGA-64-5778      TCGA-64-5779 
"CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE" 
     TCGA-64-5781      TCGA-64-5815      TCGA-67-3770      TCGA-67-3771 
"CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE" 
     TCGA-67-3772      TCGA-67-3773      TCGA-67-3774      TCGA-67-6215 
"CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE" 
     TCGA-67-6216      TCGA-67-6217      TCGA-71-6725      TCGA-73-4658 
"CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE" 
     TCGA-73-4659      TCGA-73-4662      TCGA-73-4666      TCGA-73-4668 
"CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE" 
     TCGA-73-4670      TCGA-73-4675      TCGA-73-4676      TCGA-73-4677 
"CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE" 
     TCGA-91-6828      TCGA-91-6829      TCGA-91-6831      TCGA-91-6835 
"CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE" 
     TCGA-91-6836 
"CLVS2 WILD-TYPE" 
     TCGA-05-4249      TCGA-05-4250      TCGA-05-4382      TCGA-05-4384 
"CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE" 
     TCGA-05-4390      TCGA-05-4396      TCGA-05-4397      TCGA-05-4398 
"CLVS2 WILD-TYPE"   "CLVS2 MUTATED" "CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE" 
     TCGA-05-4402      TCGA-05-4405      TCGA-05-4415      TCGA-05-4417 
"CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE"   "CLVS2 MUTATED" "CLVS2 WILD-TYPE" 
     TCGA-05-4418      TCGA-05-4420      TCGA-05-4424      TCGA-05-4426 
"CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE" 
     TCGA-05-4427      TCGA-05-4430      TCGA-05-4432      TCGA-05-4433 
"CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE" 
     TCGA-05-4434      TCGA-05-5420      TCGA-05-5423      TCGA-05-5425 
"CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE" 
     TCGA-05-5429      TCGA-05-5715      TCGA-35-3615      TCGA-35-4122 
"CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE" 
     TCGA-35-4123      TCGA-35-5375      TCGA-38-4625      TCGA-38-4626 
"CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE"   "CLVS2 MUTATED" "CLVS2 WILD-TYPE" 
     TCGA-38-4627      TCGA-38-4628      TCGA-38-4629      TCGA-38-4630 
"CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE" 
     TCGA-38-4631      TCGA-38-4632      TCGA-38-6178      TCGA-44-2655 
"CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE" 
     TCGA-44-2656      TCGA-44-2657      TCGA-44-2659      TCGA-44-2661 
"CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE" 
     TCGA-44-2662      TCGA-44-2665      TCGA-44-2666      TCGA-44-2668 
"CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE" 
     TCGA-44-3396      TCGA-44-3398      TCGA-44-3918      TCGA-44-3919 
"CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE" 
     TCGA-44-4112      TCGA-44-5643      TCGA-44-5645      TCGA-44-6144 
"CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE" 
     TCGA-44-6145      TCGA-44-6146      TCGA-44-6147      TCGA-44-6148 
"CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE" 
     TCGA-44-6774      TCGA-44-6775      TCGA-44-6776      TCGA-44-6777 
"CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE" 
     TCGA-44-6778      TCGA-44-6779      TCGA-49-4486      TCGA-49-4487 
"CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE" 
     TCGA-49-4488      TCGA-49-4490      TCGA-49-4494      TCGA-49-4501 
"CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE" 
     TCGA-49-4505      TCGA-49-4506      TCGA-49-4507      TCGA-49-4510 
"CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE" 
     TCGA-49-4512      TCGA-49-4514      TCGA-49-6742      TCGA-49-6743 
"CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE" 
     TCGA-49-6744      TCGA-49-6745      TCGA-50-5044      TCGA-50-5045 
"CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE" 
     TCGA-50-5049      TCGA-50-5051      TCGA-50-5055      TCGA-50-5066 
"CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE" 
     TCGA-50-5068      TCGA-50-5072      TCGA-50-5930      TCGA-50-5931 
"CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE" 
     TCGA-50-5932      TCGA-50-5933      TCGA-50-5935      TCGA-50-5936 
"CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE" 
     TCGA-50-5939      TCGA-50-5941      TCGA-50-5942      TCGA-50-5944 
"CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE" 
     TCGA-50-5946      TCGA-50-6590      TCGA-50-6591      TCGA-50-6592 
"CLVS2 WILD-TYPE"   "CLVS2 MUTATED" "CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE" 
     TCGA-50-6593      TCGA-50-6594      TCGA-50-6595      TCGA-50-6597 
"CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE" 
     TCGA-55-1592      TCGA-55-1594      TCGA-55-1595      TCGA-55-1596 
"CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE" 
     TCGA-55-5899      TCGA-55-6543      TCGA-55-6642      TCGA-55-6712 
"CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE" 
     TCGA-64-1676      TCGA-64-1677      TCGA-64-1678      TCGA-64-1680 
"CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE" 
     TCGA-64-5774      TCGA-64-5775      TCGA-64-5778      TCGA-64-5779 
"CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE" 
     TCGA-64-5781      TCGA-64-5815      TCGA-67-3770      TCGA-67-3771 
"CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE" 
     TCGA-67-3772      TCGA-67-3773      TCGA-67-3774      TCGA-67-6215 
"CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE" 
     TCGA-67-6216      TCGA-67-6217      TCGA-71-6725      TCGA-73-4658 
"CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE" 
     TCGA-73-4659      TCGA-73-4662      TCGA-73-4666      TCGA-73-4668 
"CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE" 
     TCGA-73-4670      TCGA-73-4675      TCGA-73-4676      TCGA-73-4677 
"CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE" 
     TCGA-91-6828      TCGA-91-6829      TCGA-91-6831      TCGA-91-6835 
"CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE" 
     TCGA-91-6836 
"CLVS2 WILD-TYPE" 
[1] "hr=" "1.7"
D278V2, continuous
D278V3, binary
[1] "tbl2"
                 cls
clus              [,1] [,2]
  CLVS2 MUTATED      3    2
  CLVS2 WILD-TYPE   90   77
        clus
vv       CLVS2 MUTATED CLVS2 WILD-TYPE
  FEMALE             3              90
  MALE               2              77
D278V4, continuous
D278V5, multiclass
D278V6, multiclass
    clus
vv   CLVS2 MUTATED CLVS2 WILD-TYPE
  T1             0              41
  T2             2             106
  T3             1              13
  T4             2               6
D278V7, multiclass
       clus
vv      CLVS2 MUTATED CLVS2 WILD-TYPE
  N0                2              93
  N1                1              36
  N2+N3             2              33
D278V8, multiclass
    clus
vv   CLVS2 MUTATED CLVS2 WILD-TYPE
  M0             5             132
  M1             0               9
  MX             0              22
D278V9, multiclass
     clus
vv    CLVS2 MUTATED CLVS2 WILD-TYPE
  I               2              86
  II              0              33
  III             3              36
  IV              0               9
D278V10, binary
[1] "tbl2"
                 cls
clus              [,1] [,2]
  CLVS2 MUTATED      0    5
  CLVS2 WILD-TYPE   16  151
     clus
vv    CLVS2 MUTATED CLVS2 WILD-TYPE
  NO              0              16
  YES             5             151
D278V11, continuous
D278V12, continuous
D278V13, multiclass
                                             clus
vv                                            CLVS2 MUTATED CLVS2 WILD-TYPE
  CURRENT REFORMED SMOKER FOR < OR = 15 YEARS             3              59
  CURRENT REFORMED SMOKER FOR > 15 YEARS                  1              45
  CURRENT SMOKER                                          1              27
  LIFELONG NON-SMOKER                                     0              24
D278V14, continuous

Clustering(279) Variable = CYLC2 MUTATION ANALYSIS
D279V1, survival
                 sevent
clus2              0  1
  CYLC2 MUTATED    5  2
  CYLC2 WILD-TYPE 94 48
  CYLC2 MUTATED CYLC2 WILD-TYPE 
              7             142 
  CYLC2 MUTATED CYLC2 WILD-TYPE 
              2              48 
$`CYLC2 MUTATED`
TCGA-05-4397 TCGA-05-4398 TCGA-05-4427 TCGA-38-4629 TCGA-49-6742 TCGA-55-1595 
       24.03        47.05        26.01        28.37        15.02        48.62 
TCGA-73-4666 
       20.28 

$`CYLC2 WILD-TYPE`
TCGA-05-4249 TCGA-05-4250 TCGA-05-4382 TCGA-05-4384 TCGA-05-4390 TCGA-05-4396 
       38.07         3.98        19.92        14.01        37.02         9.96 
TCGA-05-4402 TCGA-05-4405 TCGA-05-4415 TCGA-05-4417 TCGA-05-4418 TCGA-05-4420 
        8.02        20.05         2.96        14.93         8.98        29.95 
TCGA-05-4424 TCGA-05-4426 TCGA-05-4430 TCGA-05-4432 TCGA-05-4433 TCGA-05-4434 
       30.02        26.01        25.02        25.02        24.00        15.02 
TCGA-05-5420 TCGA-05-5423 TCGA-05-5425 TCGA-05-5429 TCGA-05-5715 TCGA-35-3615 
        1.02         4.96         2.96         0.99         2.04         0.46 
TCGA-35-4122 TCGA-35-4123 TCGA-35-5375 TCGA-38-4625 TCGA-38-4626 TCGA-38-4627 
        7.36         5.95         8.68        47.61        85.32        37.71 
TCGA-38-4628 TCGA-38-4630 TCGA-38-4631 TCGA-38-4632 TCGA-38-6178 TCGA-44-2655 
       49.02        35.28        11.64        44.61         5.19        18.87 
TCGA-44-2656 TCGA-44-2657 TCGA-44-2659 TCGA-44-2661 TCGA-44-2662 TCGA-44-2665 
       19.10        13.15        17.39         3.39        15.78        13.15 
TCGA-44-2666 TCGA-44-2668 TCGA-44-3396 TCGA-44-3398 TCGA-44-3918 TCGA-44-3919 
        3.19         8.09        10.22         8.32         6.44         6.21 
TCGA-44-4112 TCGA-44-5643 TCGA-44-5645 TCGA-44-6144 TCGA-44-6145 TCGA-44-6146 
        4.60         3.48         6.84         0.30         3.35         9.93 
TCGA-44-6147 TCGA-44-6148 TCGA-44-6774 TCGA-44-6775 TCGA-44-6776 TCGA-44-6777 
        7.76         3.12         5.42         2.70        63.72        32.45 
TCGA-44-6778 TCGA-44-6779 TCGA-49-4486 TCGA-49-4487 TCGA-49-4488 TCGA-49-4490 
       36.49        16.41        76.21        28.11        28.57        12.66 
TCGA-49-4494 TCGA-49-4501 TCGA-49-4505 TCGA-49-4506 TCGA-49-4507 TCGA-49-4510 
       35.54        46.72        14.07        32.84         8.81        29.46 
TCGA-49-4512 TCGA-49-4514 TCGA-49-6743 TCGA-49-6744 TCGA-49-6745 TCGA-50-5044 
       29.75        43.20        12.13        12.99         4.93        20.48 
TCGA-50-5045 TCGA-50-5049 TCGA-50-5051 TCGA-50-5055 TCGA-50-5066 TCGA-50-5068 
       71.47        48.82        14.96        25.81         9.76        49.28 
TCGA-50-5072 TCGA-50-5930 TCGA-50-5931 TCGA-50-5932 TCGA-50-5933 TCGA-50-5935 
        8.05         9.27         8.78        35.87        77.88        21.47 
TCGA-50-5936 TCGA-50-5939 TCGA-50-5941 TCGA-50-5942 TCGA-50-5944 TCGA-50-5946 
        8.45        15.12         9.37         4.44        12.26        11.47 
TCGA-50-6590 TCGA-50-6591 TCGA-50-6592 TCGA-50-6593 TCGA-50-6594 TCGA-50-6595 
       42.31         3.88        25.51        11.05        12.16         6.21 
TCGA-50-6597 TCGA-55-1592 TCGA-55-1594 TCGA-55-1596 TCGA-55-5899 TCGA-55-6543 
       33.37        23.05        38.73        45.17         2.86         0.07 
TCGA-55-6642 TCGA-55-6712 TCGA-64-1676 TCGA-64-1677 TCGA-64-1678 TCGA-64-1680 
       32.61         0.79        56.81        20.65        39.09        37.02 
TCGA-64-5774 TCGA-64-5775 TCGA-64-5778 TCGA-64-5779 TCGA-64-5781 TCGA-64-5815 
       83.84         0.10        30.44        16.67        39.52         7.33 
TCGA-67-3770 TCGA-67-3771 TCGA-67-3772 TCGA-67-3773 TCGA-67-3774 TCGA-67-6215 
        0.99         1.97         0.59         2.04         0.59         0.89 
TCGA-67-6216 TCGA-67-6217 TCGA-71-6725 TCGA-73-4658 TCGA-73-4659 TCGA-73-4662 
        0.69        13.87         2.01        52.57        23.38        29.95 
TCGA-73-4668 TCGA-73-4670 TCGA-73-4675 TCGA-73-4676 TCGA-73-4677 TCGA-91-6828 
       15.35         0.46         1.32         4.01         1.25         1.22 
TCGA-91-6829 TCGA-91-6831 TCGA-91-6835 TCGA-91-6836 
       41.33         1.28         1.15         0.36 

  CYLC2 MUTATED CYLC2 WILD-TYPE 
          15.02            0.07 
  CYLC2 MUTATED CYLC2 WILD-TYPE 
          48.62           85.32 
  CYLC2 MUTATED CYLC2 WILD-TYPE 
         26.010          12.825 
[1] "15.0 - 48.6 (26.0)" "0.1 - 85.3 (12.8)" 
     TCGA-05-4249      TCGA-05-4250      TCGA-05-4382      TCGA-05-4384 
"CYLC2 WILD-TYPE" "CYLC2 WILD-TYPE" "CYLC2 WILD-TYPE" "CYLC2 WILD-TYPE" 
     TCGA-05-4390      TCGA-05-4396      TCGA-05-4397      TCGA-05-4398 
"CYLC2 WILD-TYPE" "CYLC2 WILD-TYPE"   "CYLC2 MUTATED"   "CYLC2 MUTATED" 
     TCGA-05-4402      TCGA-05-4405      TCGA-05-4415      TCGA-05-4417 
"CYLC2 WILD-TYPE" "CYLC2 WILD-TYPE" "CYLC2 WILD-TYPE" "CYLC2 WILD-TYPE" 
     TCGA-05-4418      TCGA-05-4420      TCGA-05-4424      TCGA-05-4426 
"CYLC2 WILD-TYPE" "CYLC2 WILD-TYPE" "CYLC2 WILD-TYPE" "CYLC2 WILD-TYPE" 
     TCGA-05-4427      TCGA-05-4430      TCGA-05-4432      TCGA-05-4433 
  "CYLC2 MUTATED" "CYLC2 WILD-TYPE" "CYLC2 WILD-TYPE" "CYLC2 WILD-TYPE" 
     TCGA-05-4434      TCGA-05-5420      TCGA-05-5423      TCGA-05-5425 
"CYLC2 WILD-TYPE" "CYLC2 WILD-TYPE" "CYLC2 WILD-TYPE" "CYLC2 WILD-TYPE" 
     TCGA-05-5429      TCGA-05-5715      TCGA-35-3615      TCGA-35-4122 
"CYLC2 WILD-TYPE" "CYLC2 WILD-TYPE" "CYLC2 WILD-TYPE" "CYLC2 WILD-TYPE" 
     TCGA-35-4123      TCGA-35-5375      TCGA-38-4625      TCGA-38-4626 
"CYLC2 WILD-TYPE" "CYLC2 WILD-TYPE" "CYLC2 WILD-TYPE" "CYLC2 WILD-TYPE" 
     TCGA-38-4627      TCGA-38-4628      TCGA-38-4629      TCGA-38-4630 
"CYLC2 WILD-TYPE" "CYLC2 WILD-TYPE"   "CYLC2 MUTATED" "CYLC2 WILD-TYPE" 
     TCGA-38-4631      TCGA-38-4632      TCGA-38-6178      TCGA-44-2655 
"CYLC2 WILD-TYPE" "CYLC2 WILD-TYPE" "CYLC2 WILD-TYPE" "CYLC2 WILD-TYPE" 
     TCGA-44-2656      TCGA-44-2657      TCGA-44-2659      TCGA-44-2661 
"CYLC2 WILD-TYPE" "CYLC2 WILD-TYPE" "CYLC2 WILD-TYPE" "CYLC2 WILD-TYPE" 
     TCGA-44-2662      TCGA-44-2665      TCGA-44-2666      TCGA-44-2668 
"CYLC2 WILD-TYPE" "CYLC2 WILD-TYPE" "CYLC2 WILD-TYPE" "CYLC2 WILD-TYPE" 
     TCGA-44-3396      TCGA-44-3398      TCGA-44-3918      TCGA-44-3919 
"CYLC2 WILD-TYPE" "CYLC2 WILD-TYPE" "CYLC2 WILD-TYPE" "CYLC2 WILD-TYPE" 
     TCGA-44-4112      TCGA-44-5643      TCGA-44-5645      TCGA-44-6144 
"CYLC2 WILD-TYPE" "CYLC2 WILD-TYPE" "CYLC2 WILD-TYPE" "CYLC2 WILD-TYPE" 
     TCGA-44-6145      TCGA-44-6146      TCGA-44-6147      TCGA-44-6148 
"CYLC2 WILD-TYPE" "CYLC2 WILD-TYPE" "CYLC2 WILD-TYPE" "CYLC2 WILD-TYPE" 
     TCGA-44-6774      TCGA-44-6775      TCGA-44-6776      TCGA-44-6777 
"CYLC2 WILD-TYPE" "CYLC2 WILD-TYPE" "CYLC2 WILD-TYPE" "CYLC2 WILD-TYPE" 
     TCGA-44-6778      TCGA-44-6779      TCGA-49-4486      TCGA-49-4487 
"CYLC2 WILD-TYPE" "CYLC2 WILD-TYPE" "CYLC2 WILD-TYPE" "CYLC2 WILD-TYPE" 
     TCGA-49-4488      TCGA-49-4490      TCGA-49-4494      TCGA-49-4501 
"CYLC2 WILD-TYPE" "CYLC2 WILD-TYPE" "CYLC2 WILD-TYPE" "CYLC2 WILD-TYPE" 
     TCGA-49-4505      TCGA-49-4506      TCGA-49-4507      TCGA-49-4510 
"CYLC2 WILD-TYPE" "CYLC2 WILD-TYPE" "CYLC2 WILD-TYPE" "CYLC2 WILD-TYPE" 
     TCGA-49-4512      TCGA-49-4514      TCGA-49-6742      TCGA-49-6743 
"CYLC2 WILD-TYPE" "CYLC2 WILD-TYPE"   "CYLC2 MUTATED" "CYLC2 WILD-TYPE" 
     TCGA-49-6744      TCGA-49-6745      TCGA-50-5044      TCGA-50-5045 
"CYLC2 WILD-TYPE" "CYLC2 WILD-TYPE" "CYLC2 WILD-TYPE" "CYLC2 WILD-TYPE" 
     TCGA-50-5049      TCGA-50-5051      TCGA-50-5055      TCGA-50-5066 
"CYLC2 WILD-TYPE" "CYLC2 WILD-TYPE" "CYLC2 WILD-TYPE" "CYLC2 WILD-TYPE" 
     TCGA-50-5068      TCGA-50-5072      TCGA-50-5930      TCGA-50-5931 
"CYLC2 WILD-TYPE" "CYLC2 WILD-TYPE" "CYLC2 WILD-TYPE" "CYLC2 WILD-TYPE" 
     TCGA-50-5932      TCGA-50-5933      TCGA-50-5935      TCGA-50-5936 
"CYLC2 WILD-TYPE" "CYLC2 WILD-TYPE" "CYLC2 WILD-TYPE" "CYLC2 WILD-TYPE" 
     TCGA-50-5939      TCGA-50-5941      TCGA-50-5942      TCGA-50-5944 
"CYLC2 WILD-TYPE" "CYLC2 WILD-TYPE" "CYLC2 WILD-TYPE" "CYLC2 WILD-TYPE" 
     TCGA-50-5946      TCGA-50-6590      TCGA-50-6591      TCGA-50-6592 
"CYLC2 WILD-TYPE" "CYLC2 WILD-TYPE" "CYLC2 WILD-TYPE" "CYLC2 WILD-TYPE" 
     TCGA-50-6593      TCGA-50-6594      TCGA-50-6595      TCGA-50-6597 
"CYLC2 WILD-TYPE" "CYLC2 WILD-TYPE" "CYLC2 WILD-TYPE" "CYLC2 WILD-TYPE" 
     TCGA-55-1592      TCGA-55-1594      TCGA-55-1595      TCGA-55-1596 
"CYLC2 WILD-TYPE" "CYLC2 WILD-TYPE"   "CYLC2 MUTATED" "CYLC2 WILD-TYPE" 
     TCGA-55-5899      TCGA-55-6543      TCGA-55-6642      TCGA-55-6712 
"CYLC2 WILD-TYPE" "CYLC2 WILD-TYPE" "CYLC2 WILD-TYPE" "CYLC2 WILD-TYPE" 
     TCGA-64-1676      TCGA-64-1677      TCGA-64-1678      TCGA-64-1680 
"CYLC2 WILD-TYPE" "CYLC2 WILD-TYPE" "CYLC2 WILD-TYPE" "CYLC2 WILD-TYPE" 
     TCGA-64-5774      TCGA-64-5775      TCGA-64-5778      TCGA-64-5779 
"CYLC2 WILD-TYPE" "CYLC2 WILD-TYPE" "CYLC2 WILD-TYPE" "CYLC2 WILD-TYPE" 
     TCGA-64-5781      TCGA-64-5815      TCGA-67-3770      TCGA-67-3771 
"CYLC2 WILD-TYPE" "CYLC2 WILD-TYPE" "CYLC2 WILD-TYPE" "CYLC2 WILD-TYPE" 
     TCGA-67-3772      TCGA-67-3773      TCGA-67-3774      TCGA-67-6215 
"CYLC2 WILD-TYPE" "CYLC2 WILD-TYPE" "CYLC2 WILD-TYPE" "CYLC2 WILD-TYPE" 
     TCGA-67-6216      TCGA-67-6217      TCGA-71-6725      TCGA-73-4658 
"CYLC2 WILD-TYPE" "CYLC2 WILD-TYPE" "CYLC2 WILD-TYPE" "CYLC2 WILD-TYPE" 
     TCGA-73-4659      TCGA-73-4662      TCGA-73-4666      TCGA-73-4668 
"CYLC2 WILD-TYPE" "CYLC2 WILD-TYPE"   "CYLC2 MUTATED" "CYLC2 WILD-TYPE" 
     TCGA-73-4670      TCGA-73-4675      TCGA-73-4676      TCGA-73-4677 
"CYLC2 WILD-TYPE" "CYLC2 WILD-TYPE" "CYLC2 WILD-TYPE" "CYLC2 WILD-TYPE" 
     TCGA-91-6828      TCGA-91-6829      TCGA-91-6831      TCGA-91-6835 
"CYLC2 WILD-TYPE" "CYLC2 WILD-TYPE" "CYLC2 WILD-TYPE" "CYLC2 WILD-TYPE" 
     TCGA-91-6836 
"CYLC2 WILD-TYPE" 
     TCGA-05-4249      TCGA-05-4250      TCGA-05-4382      TCGA-05-4384 
"CYLC2 WILD-TYPE" "CYLC2 WILD-TYPE" "CYLC2 WILD-TYPE" "CYLC2 WILD-TYPE" 
     TCGA-05-4390      TCGA-05-4396      TCGA-05-4397      TCGA-05-4398 
"CYLC2 WILD-TYPE" "CYLC2 WILD-TYPE"   "CYLC2 MUTATED"   "CYLC2 MUTATED" 
     TCGA-05-4402      TCGA-05-4405      TCGA-05-4415      TCGA-05-4417 
"CYLC2 WILD-TYPE" "CYLC2 WILD-TYPE" "CYLC2 WILD-TYPE" "CYLC2 WILD-TYPE" 
     TCGA-05-4418      TCGA-05-4420      TCGA-05-4424      TCGA-05-4426 
"CYLC2 WILD-TYPE" "CYLC2 WILD-TYPE" "CYLC2 WILD-TYPE" "CYLC2 WILD-TYPE" 
     TCGA-05-4427      TCGA-05-4430      TCGA-05-4432      TCGA-05-4433 
  "CYLC2 MUTATED" "CYLC2 WILD-TYPE" "CYLC2 WILD-TYPE" "CYLC2 WILD-TYPE" 
     TCGA-05-4434      TCGA-05-5420      TCGA-05-5423      TCGA-05-5425 
"CYLC2 WILD-TYPE" "CYLC2 WILD-TYPE" "CYLC2 WILD-TYPE" "CYLC2 WILD-TYPE" 
     TCGA-05-5429      TCGA-05-5715      TCGA-35-3615      TCGA-35-4122 
"CYLC2 WILD-TYPE" "CYLC2 WILD-TYPE" "CYLC2 WILD-TYPE" "CYLC2 WILD-TYPE" 
     TCGA-35-4123      TCGA-35-5375      TCGA-38-4625      TCGA-38-4626 
"CYLC2 WILD-TYPE" "CYLC2 WILD-TYPE" "CYLC2 WILD-TYPE" "CYLC2 WILD-TYPE" 
     TCGA-38-4627      TCGA-38-4628      TCGA-38-4629      TCGA-38-4630 
"CYLC2 WILD-TYPE" "CYLC2 WILD-TYPE"   "CYLC2 MUTATED" "CYLC2 WILD-TYPE" 
     TCGA-38-4631      TCGA-38-4632      TCGA-38-6178      TCGA-44-2655 
"CYLC2 WILD-TYPE" "CYLC2 WILD-TYPE" "CYLC2 WILD-TYPE" "CYLC2 WILD-TYPE" 
     TCGA-44-2656      TCGA-44-2657      TCGA-44-2659      TCGA-44-2661 
"CYLC2 WILD-TYPE" "CYLC2 WILD-TYPE" "CYLC2 WILD-TYPE" "CYLC2 WILD-TYPE" 
     TCGA-44-2662      TCGA-44-2665      TCGA-44-2666      TCGA-44-2668 
"CYLC2 WILD-TYPE" "CYLC2 WILD-TYPE" "CYLC2 WILD-TYPE" "CYLC2 WILD-TYPE" 
     TCGA-44-3396      TCGA-44-3398      TCGA-44-3918      TCGA-44-3919 
"CYLC2 WILD-TYPE" "CYLC2 WILD-TYPE" "CYLC2 WILD-TYPE" "CYLC2 WILD-TYPE" 
     TCGA-44-4112      TCGA-44-5643      TCGA-44-5645      TCGA-44-6144 
"CYLC2 WILD-TYPE" "CYLC2 WILD-TYPE" "CYLC2 WILD-TYPE" "CYLC2 WILD-TYPE" 
     TCGA-44-6145      TCGA-44-6146      TCGA-44-6147      TCGA-44-6148 
"CYLC2 WILD-TYPE" "CYLC2 WILD-TYPE" "CYLC2 WILD-TYPE" "CYLC2 WILD-TYPE" 
     TCGA-44-6774      TCGA-44-6775      TCGA-44-6776      TCGA-44-6777 
"CYLC2 WILD-TYPE" "CYLC2 WILD-TYPE" "CYLC2 WILD-TYPE" "CYLC2 WILD-TYPE" 
     TCGA-44-6778      TCGA-44-6779      TCGA-49-4486      TCGA-49-4487 
"CYLC2 WILD-TYPE" "CYLC2 WILD-TYPE" "CYLC2 WILD-TYPE" "CYLC2 WILD-TYPE" 
     TCGA-49-4488      TCGA-49-4490      TCGA-49-4494      TCGA-49-4501 
"CYLC2 WILD-TYPE" "CYLC2 WILD-TYPE" "CYLC2 WILD-TYPE" "CYLC2 WILD-TYPE" 
     TCGA-49-4505      TCGA-49-4506      TCGA-49-4507      TCGA-49-4510 
"CYLC2 WILD-TYPE" "CYLC2 WILD-TYPE" "CYLC2 WILD-TYPE" "CYLC2 WILD-TYPE" 
     TCGA-49-4512      TCGA-49-4514      TCGA-49-6742      TCGA-49-6743 
"CYLC2 WILD-TYPE" "CYLC2 WILD-TYPE"   "CYLC2 MUTATED" "CYLC2 WILD-TYPE" 
     TCGA-49-6744      TCGA-49-6745      TCGA-50-5044      TCGA-50-5045 
"CYLC2 WILD-TYPE" "CYLC2 WILD-TYPE" "CYLC2 WILD-TYPE" "CYLC2 WILD-TYPE" 
     TCGA-50-5049      TCGA-50-5051      TCGA-50-5055      TCGA-50-5066 
"CYLC2 WILD-TYPE" "CYLC2 WILD-TYPE" "CYLC2 WILD-TYPE" "CYLC2 WILD-TYPE" 
     TCGA-50-5068      TCGA-50-5072      TCGA-50-5930      TCGA-50-5931 
"CYLC2 WILD-TYPE" "CYLC2 WILD-TYPE" "CYLC2 WILD-TYPE" "CYLC2 WILD-TYPE" 
     TCGA-50-5932      TCGA-50-5933      TCGA-50-5935      TCGA-50-5936 
"CYLC2 WILD-TYPE" "CYLC2 WILD-TYPE" "CYLC2 WILD-TYPE" "CYLC2 WILD-TYPE" 
     TCGA-50-5939      TCGA-50-5941      TCGA-50-5942      TCGA-50-5944 
"CYLC2 WILD-TYPE" "CYLC2 WILD-TYPE" "CYLC2 WILD-TYPE" "CYLC2 WILD-TYPE" 
     TCGA-50-5946      TCGA-50-6590      TCGA-50-6591      TCGA-50-6592 
"CYLC2 WILD-TYPE" "CYLC2 WILD-TYPE" "CYLC2 WILD-TYPE" "CYLC2 WILD-TYPE" 
     TCGA-50-6593      TCGA-50-6594      TCGA-50-6595      TCGA-50-6597 
"CYLC2 WILD-TYPE" "CYLC2 WILD-TYPE" "CYLC2 WILD-TYPE" "CYLC2 WILD-TYPE" 
     TCGA-55-1592      TCGA-55-1594      TCGA-55-1595      TCGA-55-1596 
"CYLC2 WILD-TYPE" "CYLC2 WILD-TYPE"   "CYLC2 MUTATED" "CYLC2 WILD-TYPE" 
     TCGA-55-5899      TCGA-55-6543      TCGA-55-6642      TCGA-55-6712 
"CYLC2 WILD-TYPE" "CYLC2 WILD-TYPE" "CYLC2 WILD-TYPE" "CYLC2 WILD-TYPE" 
     TCGA-64-1676      TCGA-64-1677      TCGA-64-1678      TCGA-64-1680 
"CYLC2 WILD-TYPE" "CYLC2 WILD-TYPE" "CYLC2 WILD-TYPE" "CYLC2 WILD-TYPE" 
     TCGA-64-5774      TCGA-64-5775      TCGA-64-5778      TCGA-64-5779 
"CYLC2 WILD-TYPE" "CYLC2 WILD-TYPE" "CYLC2 WILD-TYPE" "CYLC2 WILD-TYPE" 
     TCGA-64-5781      TCGA-64-5815      TCGA-67-3770      TCGA-67-3771 
"CYLC2 WILD-TYPE" "CYLC2 WILD-TYPE" "CYLC2 WILD-TYPE" "CYLC2 WILD-TYPE" 
     TCGA-67-3772      TCGA-67-3773      TCGA-67-3774      TCGA-67-6215 
"CYLC2 WILD-TYPE" "CYLC2 WILD-TYPE" "CYLC2 WILD-TYPE" "CYLC2 WILD-TYPE" 
     TCGA-67-6216      TCGA-67-6217      TCGA-71-6725      TCGA-73-4658 
"CYLC2 WILD-TYPE" "CYLC2 WILD-TYPE" "CYLC2 WILD-TYPE" "CYLC2 WILD-TYPE" 
     TCGA-73-4659      TCGA-73-4662      TCGA-73-4666      TCGA-73-4668 
"CYLC2 WILD-TYPE" "CYLC2 WILD-TYPE"   "CYLC2 MUTATED" "CYLC2 WILD-TYPE" 
     TCGA-73-4670      TCGA-73-4675      TCGA-73-4676      TCGA-73-4677 
"CYLC2 WILD-TYPE" "CYLC2 WILD-TYPE" "CYLC2 WILD-TYPE" "CYLC2 WILD-TYPE" 
     TCGA-91-6828      TCGA-91-6829      TCGA-91-6831      TCGA-91-6835 
"CYLC2 WILD-TYPE" "CYLC2 WILD-TYPE" "CYLC2 WILD-TYPE" "CYLC2 WILD-TYPE" 
     TCGA-91-6836 
"CYLC2 WILD-TYPE" 
     TCGA-05-4249      TCGA-05-4250      TCGA-05-4382      TCGA-05-4384 
"CYLC2 WILD-TYPE" "CYLC2 WILD-TYPE" "CYLC2 WILD-TYPE" "CYLC2 WILD-TYPE" 
     TCGA-05-4390      TCGA-05-4396      TCGA-05-4397      TCGA-05-4398 
"CYLC2 WILD-TYPE" "CYLC2 WILD-TYPE"   "CYLC2 MUTATED"   "CYLC2 MUTATED" 
     TCGA-05-4402      TCGA-05-4405      TCGA-05-4415      TCGA-05-4417 
"CYLC2 WILD-TYPE" "CYLC2 WILD-TYPE" "CYLC2 WILD-TYPE" "CYLC2 WILD-TYPE" 
     TCGA-05-4418      TCGA-05-4420      TCGA-05-4424      TCGA-05-4426 
"CYLC2 WILD-TYPE" "CYLC2 WILD-TYPE" "CYLC2 WILD-TYPE" "CYLC2 WILD-TYPE" 
     TCGA-05-4427      TCGA-05-4430      TCGA-05-4432      TCGA-05-4433 
  "CYLC2 MUTATED" "CYLC2 WILD-TYPE" "CYLC2 WILD-TYPE" "CYLC2 WILD-TYPE" 
     TCGA-05-4434      TCGA-05-5420      TCGA-05-5423      TCGA-05-5425 
"CYLC2 WILD-TYPE" "CYLC2 WILD-TYPE" "CYLC2 WILD-TYPE" "CYLC2 WILD-TYPE" 
     TCGA-05-5429      TCGA-05-5715      TCGA-35-3615      TCGA-35-4122 
"CYLC2 WILD-TYPE" "CYLC2 WILD-TYPE" "CYLC2 WILD-TYPE" "CYLC2 WILD-TYPE" 
     TCGA-35-4123      TCGA-35-5375      TCGA-38-4625      TCGA-38-4626 
"CYLC2 WILD-TYPE" "CYLC2 WILD-TYPE" "CYLC2 WILD-TYPE" "CYLC2 WILD-TYPE" 
     TCGA-38-4627      TCGA-38-4628      TCGA-38-4629      TCGA-38-4630 
"CYLC2 WILD-TYPE" "CYLC2 WILD-TYPE"   "CYLC2 MUTATED" "CYLC2 WILD-TYPE" 
     TCGA-38-4631      TCGA-38-4632      TCGA-38-6178      TCGA-44-2655 
"CYLC2 WILD-TYPE" "CYLC2 WILD-TYPE" "CYLC2 WILD-TYPE" "CYLC2 WILD-TYPE" 
     TCGA-44-2656      TCGA-44-2657      TCGA-44-2659      TCGA-44-2661 
"CYLC2 WILD-TYPE" "CYLC2 WILD-TYPE" "CYLC2 WILD-TYPE" "CYLC2 WILD-TYPE" 
     TCGA-44-2662      TCGA-44-2665      TCGA-44-2666      TCGA-44-2668 
"CYLC2 WILD-TYPE" "CYLC2 WILD-TYPE" "CYLC2 WILD-TYPE" "CYLC2 WILD-TYPE" 
     TCGA-44-3396      TCGA-44-3398      TCGA-44-3918      TCGA-44-3919 
"CYLC2 WILD-TYPE" "CYLC2 WILD-TYPE" "CYLC2 WILD-TYPE" "CYLC2 WILD-TYPE" 
     TCGA-44-4112      TCGA-44-5643      TCGA-44-5645      TCGA-44-6144 
"CYLC2 WILD-TYPE" "CYLC2 WILD-TYPE" "CYLC2 WILD-TYPE" "CYLC2 WILD-TYPE" 
     TCGA-44-6145      TCGA-44-6146      TCGA-44-6147      TCGA-44-6148 
"CYLC2 WILD-TYPE" "CYLC2 WILD-TYPE" "CYLC2 WILD-TYPE" "CYLC2 WILD-TYPE" 
     TCGA-44-6774      TCGA-44-6775      TCGA-44-6776      TCGA-44-6777 
"CYLC2 WILD-TYPE" "CYLC2 WILD-TYPE" "CYLC2 WILD-TYPE" "CYLC2 WILD-TYPE" 
     TCGA-44-6778      TCGA-44-6779      TCGA-49-4486      TCGA-49-4487 
"CYLC2 WILD-TYPE" "CYLC2 WILD-TYPE" "CYLC2 WILD-TYPE" "CYLC2 WILD-TYPE" 
     TCGA-49-4488      TCGA-49-4490      TCGA-49-4494      TCGA-49-4501 
"CYLC2 WILD-TYPE" "CYLC2 WILD-TYPE" "CYLC2 WILD-TYPE" "CYLC2 WILD-TYPE" 
     TCGA-49-4505      TCGA-49-4506      TCGA-49-4507      TCGA-49-4510 
"CYLC2 WILD-TYPE" "CYLC2 WILD-TYPE" "CYLC2 WILD-TYPE" "CYLC2 WILD-TYPE" 
     TCGA-49-4512      TCGA-49-4514      TCGA-49-6742      TCGA-49-6743 
"CYLC2 WILD-TYPE" "CYLC2 WILD-TYPE"   "CYLC2 MUTATED" "CYLC2 WILD-TYPE" 
     TCGA-49-6744      TCGA-49-6745      TCGA-50-5044      TCGA-50-5045 
"CYLC2 WILD-TYPE" "CYLC2 WILD-TYPE" "CYLC2 WILD-TYPE" "CYLC2 WILD-TYPE" 
     TCGA-50-5049      TCGA-50-5051      TCGA-50-5055      TCGA-50-5066 
"CYLC2 WILD-TYPE" "CYLC2 WILD-TYPE" "CYLC2 WILD-TYPE" "CYLC2 WILD-TYPE" 
     TCGA-50-5068      TCGA-50-5072      TCGA-50-5930      TCGA-50-5931 
"CYLC2 WILD-TYPE" "CYLC2 WILD-TYPE" "CYLC2 WILD-TYPE" "CYLC2 WILD-TYPE" 
     TCGA-50-5932      TCGA-50-5933      TCGA-50-5935      TCGA-50-5936 
"CYLC2 WILD-TYPE" "CYLC2 WILD-TYPE" "CYLC2 WILD-TYPE" "CYLC2 WILD-TYPE" 
     TCGA-50-5939      TCGA-50-5941      TCGA-50-5942      TCGA-50-5944 
"CYLC2 WILD-TYPE" "CYLC2 WILD-TYPE" "CYLC2 WILD-TYPE" "CYLC2 WILD-TYPE" 
     TCGA-50-5946      TCGA-50-6590      TCGA-50-6591      TCGA-50-6592 
"CYLC2 WILD-TYPE" "CYLC2 WILD-TYPE" "CYLC2 WILD-TYPE" "CYLC2 WILD-TYPE" 
     TCGA-50-6593      TCGA-50-6594      TCGA-50-6595      TCGA-50-6597 
"CYLC2 WILD-TYPE" "CYLC2 WILD-TYPE" "CYLC2 WILD-TYPE" "CYLC2 WILD-TYPE" 
     TCGA-55-1592      TCGA-55-1594      TCGA-55-1595      TCGA-55-1596 
"CYLC2 WILD-TYPE" "CYLC2 WILD-TYPE"   "CYLC2 MUTATED" "CYLC2 WILD-TYPE" 
     TCGA-55-5899      TCGA-55-6543      TCGA-55-6642      TCGA-55-6712 
"CYLC2 WILD-TYPE" "CYLC2 WILD-TYPE" "CYLC2 WILD-TYPE" "CYLC2 WILD-TYPE" 
     TCGA-64-1676      TCGA-64-1677      TCGA-64-1678      TCGA-64-1680 
"CYLC2 WILD-TYPE" "CYLC2 WILD-TYPE" "CYLC2 WILD-TYPE" "CYLC2 WILD-TYPE" 
     TCGA-64-5774      TCGA-64-5775      TCGA-64-5778      TCGA-64-5779 
"CYLC2 WILD-TYPE" "CYLC2 WILD-TYPE" "CYLC2 WILD-TYPE" "CYLC2 WILD-TYPE" 
     TCGA-64-5781      TCGA-64-5815      TCGA-67-3770      TCGA-67-3771 
"CYLC2 WILD-TYPE" "CYLC2 WILD-TYPE" "CYLC2 WILD-TYPE" "CYLC2 WILD-TYPE" 
     TCGA-67-3772      TCGA-67-3773      TCGA-67-3774      TCGA-67-6215 
"CYLC2 WILD-TYPE" "CYLC2 WILD-TYPE" "CYLC2 WILD-TYPE" "CYLC2 WILD-TYPE" 
     TCGA-67-6216      TCGA-67-6217      TCGA-71-6725      TCGA-73-4658 
"CYLC2 WILD-TYPE" "CYLC2 WILD-TYPE" "CYLC2 WILD-TYPE" "CYLC2 WILD-TYPE" 
     TCGA-73-4659      TCGA-73-4662      TCGA-73-4666      TCGA-73-4668 
"CYLC2 WILD-TYPE" "CYLC2 WILD-TYPE"   "CYLC2 MUTATED" "CYLC2 WILD-TYPE" 
     TCGA-73-4670      TCGA-73-4675      TCGA-73-4676      TCGA-73-4677 
"CYLC2 WILD-TYPE" "CYLC2 WILD-TYPE" "CYLC2 WILD-TYPE" "CYLC2 WILD-TYPE" 
     TCGA-91-6828      TCGA-91-6829      TCGA-91-6831      TCGA-91-6835 
"CYLC2 WILD-TYPE" "CYLC2 WILD-TYPE" "CYLC2 WILD-TYPE" "CYLC2 WILD-TYPE" 
     TCGA-91-6836 
"CYLC2 WILD-TYPE" 
[1] "hr=" "1.8"
D279V2, continuous
D279V3, binary
[1] "tbl2"
                 cls
clus              [,1] [,2]
  CYLC2 MUTATED      4    3
  CYLC2 WILD-TYPE   89   76
        clus
vv       CYLC2 MUTATED CYLC2 WILD-TYPE
  FEMALE             4              89
  MALE               3              76
D279V4, continuous
[1] "Remove cluster labels:" "CYLC2 MUTATED"         
clus
  CYLC2 MUTATED CYLC2 WILD-TYPE 
              1              11 
     TCGA-35-4122      TCGA-35-4123      TCGA-35-5375      TCGA-64-1677 
"CYLC2 WILD-TYPE" "CYLC2 WILD-TYPE" "CYLC2 WILD-TYPE" "CYLC2 WILD-TYPE" 
     TCGA-64-5778      TCGA-71-6725      TCGA-73-4659      TCGA-73-4662 
"CYLC2 WILD-TYPE" "CYLC2 WILD-TYPE" "CYLC2 WILD-TYPE" "CYLC2 WILD-TYPE" 
     TCGA-73-4668      TCGA-73-4676      TCGA-75-5122 
"CYLC2 WILD-TYPE" "CYLC2 WILD-TYPE" "CYLC2 WILD-TYPE" 
D279V5, multiclass
D279V6, multiclass
    clus
vv   CYLC2 MUTATED CYLC2 WILD-TYPE
  T1             2              39
  T2             3             105
  T3             1              13
  T4             1               7
D279V7, multiclass
       clus
vv      CYLC2 MUTATED CYLC2 WILD-TYPE
  N0                3              92
  N1                3              34
  N2+N3             1              34
D279V8, multiclass
    clus
vv   CYLC2 MUTATED CYLC2 WILD-TYPE
  M0             5             132
  M1             1               8
  MX             1              21
D279V9, multiclass
     clus
vv    CYLC2 MUTATED CYLC2 WILD-TYPE
  I               1              87
  II              4              29
  III             1              38
  IV              1               8
D279V10, binary
[1] "tbl2"
                 cls
clus              [,1] [,2]
  CYLC2 MUTATED      1    6
  CYLC2 WILD-TYPE   15  150
     clus
vv    CYLC2 MUTATED CYLC2 WILD-TYPE
  NO              1              15
  YES             6             150
D279V11, continuous
D279V12, continuous
D279V13, multiclass
                                             clus
vv                                            CYLC2 MUTATED CYLC2 WILD-TYPE
  CURRENT REFORMED SMOKER FOR < OR = 15 YEARS             4              58
  CURRENT REFORMED SMOKER FOR > 15 YEARS                  1              45
  CURRENT SMOKER                                          2              26
  LIFELONG NON-SMOKER                                     0              24
D279V14, continuous

Clustering(280) Variable = REG3G MUTATION ANALYSIS
D280V1, survival
                 sevent
clus2              0  1
  REG3G MUTATED    6  2
  REG3G WILD-TYPE 93 48
  REG3G MUTATED REG3G WILD-TYPE 
              8             141 
  REG3G MUTATED REG3G WILD-TYPE 
              2              48 
$`REG3G MUTATED`
TCGA-05-4390 TCGA-05-4424 TCGA-05-4432 TCGA-38-4632 TCGA-49-6743 TCGA-50-5931 
       37.02        30.02        25.02        44.61        12.13         8.78 
TCGA-55-5899 TCGA-64-5778 
        2.86        30.44 

$`REG3G WILD-TYPE`
TCGA-05-4249 TCGA-05-4250 TCGA-05-4382 TCGA-05-4384 TCGA-05-4396 TCGA-05-4397 
       38.07         3.98        19.92        14.01         9.96        24.03 
TCGA-05-4398 TCGA-05-4402 TCGA-05-4405 TCGA-05-4415 TCGA-05-4417 TCGA-05-4418 
       47.05         8.02        20.05         2.96        14.93         8.98 
TCGA-05-4420 TCGA-05-4426 TCGA-05-4427 TCGA-05-4430 TCGA-05-4433 TCGA-05-4434 
       29.95        26.01        26.01        25.02        24.00        15.02 
TCGA-05-5420 TCGA-05-5423 TCGA-05-5425 TCGA-05-5429 TCGA-05-5715 TCGA-35-3615 
        1.02         4.96         2.96         0.99         2.04         0.46 
TCGA-35-4122 TCGA-35-4123 TCGA-35-5375 TCGA-38-4625 TCGA-38-4626 TCGA-38-4627 
        7.36         5.95         8.68        47.61        85.32        37.71 
TCGA-38-4628 TCGA-38-4629 TCGA-38-4630 TCGA-38-4631 TCGA-38-6178 TCGA-44-2655 
       49.02        28.37        35.28        11.64         5.19        18.87 
TCGA-44-2656 TCGA-44-2657 TCGA-44-2659 TCGA-44-2661 TCGA-44-2662 TCGA-44-2665 
       19.10        13.15        17.39         3.39        15.78        13.15 
TCGA-44-2666 TCGA-44-2668 TCGA-44-3396 TCGA-44-3398 TCGA-44-3918 TCGA-44-3919 
        3.19         8.09        10.22         8.32         6.44         6.21 
TCGA-44-4112 TCGA-44-5643 TCGA-44-5645 TCGA-44-6144 TCGA-44-6145 TCGA-44-6146 
        4.60         3.48         6.84         0.30         3.35         9.93 
TCGA-44-6147 TCGA-44-6148 TCGA-44-6774 TCGA-44-6775 TCGA-44-6776 TCGA-44-6777 
        7.76         3.12         5.42         2.70        63.72        32.45 
TCGA-44-6778 TCGA-44-6779 TCGA-49-4486 TCGA-49-4487 TCGA-49-4488 TCGA-49-4490 
       36.49        16.41        76.21        28.11        28.57        12.66 
TCGA-49-4494 TCGA-49-4501 TCGA-49-4505 TCGA-49-4506 TCGA-49-4507 TCGA-49-4510 
       35.54        46.72        14.07        32.84         8.81        29.46 
TCGA-49-4512 TCGA-49-4514 TCGA-49-6742 TCGA-49-6744 TCGA-49-6745 TCGA-50-5044 
       29.75        43.20        15.02        12.99         4.93        20.48 
TCGA-50-5045 TCGA-50-5049 TCGA-50-5051 TCGA-50-5055 TCGA-50-5066 TCGA-50-5068 
       71.47        48.82        14.96        25.81         9.76        49.28 
TCGA-50-5072 TCGA-50-5930 TCGA-50-5932 TCGA-50-5933 TCGA-50-5935 TCGA-50-5936 
        8.05         9.27        35.87        77.88        21.47         8.45 
TCGA-50-5939 TCGA-50-5941 TCGA-50-5942 TCGA-50-5944 TCGA-50-5946 TCGA-50-6590 
       15.12         9.37         4.44        12.26        11.47        42.31 
TCGA-50-6591 TCGA-50-6592 TCGA-50-6593 TCGA-50-6594 TCGA-50-6595 TCGA-50-6597 
        3.88        25.51        11.05        12.16         6.21        33.37 
TCGA-55-1592 TCGA-55-1594 TCGA-55-1595 TCGA-55-1596 TCGA-55-6543 TCGA-55-6642 
       23.05        38.73        48.62        45.17         0.07        32.61 
TCGA-55-6712 TCGA-64-1676 TCGA-64-1677 TCGA-64-1678 TCGA-64-1680 TCGA-64-5774 
        0.79        56.81        20.65        39.09        37.02        83.84 
TCGA-64-5775 TCGA-64-5779 TCGA-64-5781 TCGA-64-5815 TCGA-67-3770 TCGA-67-3771 
        0.10        16.67        39.52         7.33         0.99         1.97 
TCGA-67-3772 TCGA-67-3773 TCGA-67-3774 TCGA-67-6215 TCGA-67-6216 TCGA-67-6217 
        0.59         2.04         0.59         0.89         0.69        13.87 
TCGA-71-6725 TCGA-73-4658 TCGA-73-4659 TCGA-73-4662 TCGA-73-4666 TCGA-73-4668 
        2.01        52.57        23.38        29.95        20.28        15.35 
TCGA-73-4670 TCGA-73-4675 TCGA-73-4676 TCGA-73-4677 TCGA-91-6828 TCGA-91-6829 
        0.46         1.32         4.01         1.25         1.22        41.33 
TCGA-91-6831 TCGA-91-6835 TCGA-91-6836 
        1.28         1.15         0.36 

  REG3G MUTATED REG3G WILD-TYPE 
           2.86            0.07 
  REG3G MUTATED REG3G WILD-TYPE 
          44.61           85.32 
  REG3G MUTATED REG3G WILD-TYPE 
          27.52           13.15 
[1] "2.9 - 44.6 (27.5)" "0.1 - 85.3 (13.2)"
     TCGA-05-4249      TCGA-05-4250      TCGA-05-4382      TCGA-05-4384 
"REG3G WILD-TYPE" "REG3G WILD-TYPE" "REG3G WILD-TYPE" "REG3G WILD-TYPE" 
     TCGA-05-4390      TCGA-05-4396      TCGA-05-4397      TCGA-05-4398 
  "REG3G MUTATED" "REG3G WILD-TYPE" "REG3G WILD-TYPE" "REG3G WILD-TYPE" 
     TCGA-05-4402      TCGA-05-4405      TCGA-05-4415      TCGA-05-4417 
"REG3G WILD-TYPE" "REG3G WILD-TYPE" "REG3G WILD-TYPE" "REG3G WILD-TYPE" 
     TCGA-05-4418      TCGA-05-4420      TCGA-05-4424      TCGA-05-4426 
"REG3G WILD-TYPE" "REG3G WILD-TYPE"   "REG3G MUTATED" "REG3G WILD-TYPE" 
     TCGA-05-4427      TCGA-05-4430      TCGA-05-4432      TCGA-05-4433 
"REG3G WILD-TYPE" "REG3G WILD-TYPE"   "REG3G MUTATED" "REG3G WILD-TYPE" 
     TCGA-05-4434      TCGA-05-5420      TCGA-05-5423      TCGA-05-5425 
"REG3G WILD-TYPE" "REG3G WILD-TYPE" "REG3G WILD-TYPE" "REG3G WILD-TYPE" 
     TCGA-05-5429      TCGA-05-5715      TCGA-35-3615      TCGA-35-4122 
"REG3G WILD-TYPE" "REG3G WILD-TYPE" "REG3G WILD-TYPE" "REG3G WILD-TYPE" 
     TCGA-35-4123      TCGA-35-5375      TCGA-38-4625      TCGA-38-4626 
"REG3G WILD-TYPE" "REG3G WILD-TYPE" "REG3G WILD-TYPE" "REG3G WILD-TYPE" 
     TCGA-38-4627      TCGA-38-4628      TCGA-38-4629      TCGA-38-4630 
"REG3G WILD-TYPE" "REG3G WILD-TYPE" "REG3G WILD-TYPE" "REG3G WILD-TYPE" 
     TCGA-38-4631      TCGA-38-4632      TCGA-38-6178      TCGA-44-2655 
"REG3G WILD-TYPE"   "REG3G MUTATED" "REG3G WILD-TYPE" "REG3G WILD-TYPE" 
     TCGA-44-2656      TCGA-44-2657      TCGA-44-2659      TCGA-44-2661 
"REG3G WILD-TYPE" "REG3G WILD-TYPE" "REG3G WILD-TYPE" "REG3G WILD-TYPE" 
     TCGA-44-2662      TCGA-44-2665      TCGA-44-2666      TCGA-44-2668 
"REG3G WILD-TYPE" "REG3G WILD-TYPE" "REG3G WILD-TYPE" "REG3G WILD-TYPE" 
     TCGA-44-3396      TCGA-44-3398      TCGA-44-3918      TCGA-44-3919 
"REG3G WILD-TYPE" "REG3G WILD-TYPE" "REG3G WILD-TYPE" "REG3G WILD-TYPE" 
     TCGA-44-4112      TCGA-44-5643      TCGA-44-5645      TCGA-44-6144 
"REG3G WILD-TYPE" "REG3G WILD-TYPE" "REG3G WILD-TYPE" "REG3G WILD-TYPE" 
     TCGA-44-6145      TCGA-44-6146      TCGA-44-6147      TCGA-44-6148 
"REG3G WILD-TYPE" "REG3G WILD-TYPE" "REG3G WILD-TYPE" "REG3G WILD-TYPE" 
     TCGA-44-6774      TCGA-44-6775      TCGA-44-6776      TCGA-44-6777 
"REG3G WILD-TYPE" "REG3G WILD-TYPE" "REG3G WILD-TYPE" "REG3G WILD-TYPE" 
     TCGA-44-6778      TCGA-44-6779      TCGA-49-4486      TCGA-49-4487 
"REG3G WILD-TYPE" "REG3G WILD-TYPE" "REG3G WILD-TYPE" "REG3G WILD-TYPE" 
     TCGA-49-4488      TCGA-49-4490      TCGA-49-4494      TCGA-49-4501 
"REG3G WILD-TYPE" "REG3G WILD-TYPE" "REG3G WILD-TYPE" "REG3G WILD-TYPE" 
     TCGA-49-4505      TCGA-49-4506      TCGA-49-4507      TCGA-49-4510 
"REG3G WILD-TYPE" "REG3G WILD-TYPE" "REG3G WILD-TYPE" "REG3G WILD-TYPE" 
     TCGA-49-4512      TCGA-49-4514      TCGA-49-6742      TCGA-49-6743 
"REG3G WILD-TYPE" "REG3G WILD-TYPE" "REG3G WILD-TYPE"   "REG3G MUTATED" 
     TCGA-49-6744      TCGA-49-6745      TCGA-50-5044      TCGA-50-5045 
"REG3G WILD-TYPE" "REG3G WILD-TYPE" "REG3G WILD-TYPE" "REG3G WILD-TYPE" 
     TCGA-50-5049      TCGA-50-5051      TCGA-50-5055      TCGA-50-5066 
"REG3G WILD-TYPE" "REG3G WILD-TYPE" "REG3G WILD-TYPE" "REG3G WILD-TYPE" 
     TCGA-50-5068      TCGA-50-5072      TCGA-50-5930      TCGA-50-5931 
"REG3G WILD-TYPE" "REG3G WILD-TYPE" "REG3G WILD-TYPE"   "REG3G MUTATED" 
     TCGA-50-5932      TCGA-50-5933      TCGA-50-5935      TCGA-50-5936 
"REG3G WILD-TYPE" "REG3G WILD-TYPE" "REG3G WILD-TYPE" "REG3G WILD-TYPE" 
     TCGA-50-5939      TCGA-50-5941      TCGA-50-5942      TCGA-50-5944 
"REG3G WILD-TYPE" "REG3G WILD-TYPE" "REG3G WILD-TYPE" "REG3G WILD-TYPE" 
     TCGA-50-5946      TCGA-50-6590      TCGA-50-6591      TCGA-50-6592 
"REG3G WILD-TYPE" "REG3G WILD-TYPE" "REG3G WILD-TYPE" "REG3G WILD-TYPE" 
     TCGA-50-6593      TCGA-50-6594      TCGA-50-6595      TCGA-50-6597 
"REG3G WILD-TYPE" "REG3G WILD-TYPE" "REG3G WILD-TYPE" "REG3G WILD-TYPE" 
     TCGA-55-1592      TCGA-55-1594      TCGA-55-1595      TCGA-55-1596 
"REG3G WILD-TYPE" "REG3G WILD-TYPE" "REG3G WILD-TYPE" "REG3G WILD-TYPE" 
     TCGA-55-5899      TCGA-55-6543      TCGA-55-6642      TCGA-55-6712 
  "REG3G MUTATED" "REG3G WILD-TYPE" "REG3G WILD-TYPE" "REG3G WILD-TYPE" 
     TCGA-64-1676      TCGA-64-1677      TCGA-64-1678      TCGA-64-1680 
"REG3G WILD-TYPE" "REG3G WILD-TYPE" "REG3G WILD-TYPE" "REG3G WILD-TYPE" 
     TCGA-64-5774      TCGA-64-5775      TCGA-64-5778      TCGA-64-5779 
"REG3G WILD-TYPE" "REG3G WILD-TYPE"   "REG3G MUTATED" "REG3G WILD-TYPE" 
     TCGA-64-5781      TCGA-64-5815      TCGA-67-3770      TCGA-67-3771 
"REG3G WILD-TYPE" "REG3G WILD-TYPE" "REG3G WILD-TYPE" "REG3G WILD-TYPE" 
     TCGA-67-3772      TCGA-67-3773      TCGA-67-3774      TCGA-67-6215 
"REG3G WILD-TYPE" "REG3G WILD-TYPE" "REG3G WILD-TYPE" "REG3G WILD-TYPE" 
     TCGA-67-6216      TCGA-67-6217      TCGA-71-6725      TCGA-73-4658 
"REG3G WILD-TYPE" "REG3G WILD-TYPE" "REG3G WILD-TYPE" "REG3G WILD-TYPE" 
     TCGA-73-4659      TCGA-73-4662      TCGA-73-4666      TCGA-73-4668 
"REG3G WILD-TYPE" "REG3G WILD-TYPE" "REG3G WILD-TYPE" "REG3G WILD-TYPE" 
     TCGA-73-4670      TCGA-73-4675      TCGA-73-4676      TCGA-73-4677 
"REG3G WILD-TYPE" "REG3G WILD-TYPE" "REG3G WILD-TYPE" "REG3G WILD-TYPE" 
     TCGA-91-6828      TCGA-91-6829      TCGA-91-6831      TCGA-91-6835 
"REG3G WILD-TYPE" "REG3G WILD-TYPE" "REG3G WILD-TYPE" "REG3G WILD-TYPE" 
     TCGA-91-6836 
"REG3G WILD-TYPE" 
     TCGA-05-4249      TCGA-05-4250      TCGA-05-4382      TCGA-05-4384 
"REG3G WILD-TYPE" "REG3G WILD-TYPE" "REG3G WILD-TYPE" "REG3G WILD-TYPE" 
     TCGA-05-4390      TCGA-05-4396      TCGA-05-4397      TCGA-05-4398 
  "REG3G MUTATED" "REG3G WILD-TYPE" "REG3G WILD-TYPE" "REG3G WILD-TYPE" 
     TCGA-05-4402      TCGA-05-4405      TCGA-05-4415      TCGA-05-4417 
"REG3G WILD-TYPE" "REG3G WILD-TYPE" "REG3G WILD-TYPE" "REG3G WILD-TYPE" 
     TCGA-05-4418      TCGA-05-4420      TCGA-05-4424      TCGA-05-4426 
"REG3G WILD-TYPE" "REG3G WILD-TYPE"   "REG3G MUTATED" "REG3G WILD-TYPE" 
     TCGA-05-4427      TCGA-05-4430      TCGA-05-4432      TCGA-05-4433 
"REG3G WILD-TYPE" "REG3G WILD-TYPE"   "REG3G MUTATED" "REG3G WILD-TYPE" 
     TCGA-05-4434      TCGA-05-5420      TCGA-05-5423      TCGA-05-5425 
"REG3G WILD-TYPE" "REG3G WILD-TYPE" "REG3G WILD-TYPE" "REG3G WILD-TYPE" 
     TCGA-05-5429      TCGA-05-5715      TCGA-35-3615      TCGA-35-4122 
"REG3G WILD-TYPE" "REG3G WILD-TYPE" "REG3G WILD-TYPE" "REG3G WILD-TYPE" 
     TCGA-35-4123      TCGA-35-5375      TCGA-38-4625      TCGA-38-4626 
"REG3G WILD-TYPE" "REG3G WILD-TYPE" "REG3G WILD-TYPE" "REG3G WILD-TYPE" 
     TCGA-38-4627      TCGA-38-4628      TCGA-38-4629      TCGA-38-4630 
"REG3G WILD-TYPE" "REG3G WILD-TYPE" "REG3G WILD-TYPE" "REG3G WILD-TYPE" 
     TCGA-38-4631      TCGA-38-4632      TCGA-38-6178      TCGA-44-2655 
"REG3G WILD-TYPE"   "REG3G MUTATED" "REG3G WILD-TYPE" "REG3G WILD-TYPE" 
     TCGA-44-2656      TCGA-44-2657      TCGA-44-2659      TCGA-44-2661 
"REG3G WILD-TYPE" "REG3G WILD-TYPE" "REG3G WILD-TYPE" "REG3G WILD-TYPE" 
     TCGA-44-2662      TCGA-44-2665      TCGA-44-2666      TCGA-44-2668 
"REG3G WILD-TYPE" "REG3G WILD-TYPE" "REG3G WILD-TYPE" "REG3G WILD-TYPE" 
     TCGA-44-3396      TCGA-44-3398      TCGA-44-3918      TCGA-44-3919 
"REG3G WILD-TYPE" "REG3G WILD-TYPE" "REG3G WILD-TYPE" "REG3G WILD-TYPE" 
     TCGA-44-4112      TCGA-44-5643      TCGA-44-5645      TCGA-44-6144 
"REG3G WILD-TYPE" "REG3G WILD-TYPE" "REG3G WILD-TYPE" "REG3G WILD-TYPE" 
     TCGA-44-6145      TCGA-44-6146      TCGA-44-6147      TCGA-44-6148 
"REG3G WILD-TYPE" "REG3G WILD-TYPE" "REG3G WILD-TYPE" "REG3G WILD-TYPE" 
     TCGA-44-6774      TCGA-44-6775      TCGA-44-6776      TCGA-44-6777 
"REG3G WILD-TYPE" "REG3G WILD-TYPE" "REG3G WILD-TYPE" "REG3G WILD-TYPE" 
     TCGA-44-6778      TCGA-44-6779      TCGA-49-4486      TCGA-49-4487 
"REG3G WILD-TYPE" "REG3G WILD-TYPE" "REG3G WILD-TYPE" "REG3G WILD-TYPE" 
     TCGA-49-4488      TCGA-49-4490      TCGA-49-4494      TCGA-49-4501 
"REG3G WILD-TYPE" "REG3G WILD-TYPE" "REG3G WILD-TYPE" "REG3G WILD-TYPE" 
     TCGA-49-4505      TCGA-49-4506      TCGA-49-4507      TCGA-49-4510 
"REG3G WILD-TYPE" "REG3G WILD-TYPE" "REG3G WILD-TYPE" "REG3G WILD-TYPE" 
     TCGA-49-4512      TCGA-49-4514      TCGA-49-6742      TCGA-49-6743 
"REG3G WILD-TYPE" "REG3G WILD-TYPE" "REG3G WILD-TYPE"   "REG3G MUTATED" 
     TCGA-49-6744      TCGA-49-6745      TCGA-50-5044      TCGA-50-5045 
"REG3G WILD-TYPE" "REG3G WILD-TYPE" "REG3G WILD-TYPE" "REG3G WILD-TYPE" 
     TCGA-50-5049      TCGA-50-5051      TCGA-50-5055      TCGA-50-5066 
"REG3G WILD-TYPE" "REG3G WILD-TYPE" "REG3G WILD-TYPE" "REG3G WILD-TYPE" 
     TCGA-50-5068      TCGA-50-5072      TCGA-50-5930      TCGA-50-5931 
"REG3G WILD-TYPE" "REG3G WILD-TYPE" "REG3G WILD-TYPE"   "REG3G MUTATED" 
     TCGA-50-5932      TCGA-50-5933      TCGA-50-5935      TCGA-50-5936 
"REG3G WILD-TYPE" "REG3G WILD-TYPE" "REG3G WILD-TYPE" "REG3G WILD-TYPE" 
     TCGA-50-5939      TCGA-50-5941      TCGA-50-5942      TCGA-50-5944 
"REG3G WILD-TYPE" "REG3G WILD-TYPE" "REG3G WILD-TYPE" "REG3G WILD-TYPE" 
     TCGA-50-5946      TCGA-50-6590      TCGA-50-6591      TCGA-50-6592 
"REG3G WILD-TYPE" "REG3G WILD-TYPE" "REG3G WILD-TYPE" "REG3G WILD-TYPE" 
     TCGA-50-6593      TCGA-50-6594      TCGA-50-6595      TCGA-50-6597 
"REG3G WILD-TYPE" "REG3G WILD-TYPE" "REG3G WILD-TYPE" "REG3G WILD-TYPE" 
     TCGA-55-1592      TCGA-55-1594      TCGA-55-1595      TCGA-55-1596 
"REG3G WILD-TYPE" "REG3G WILD-TYPE" "REG3G WILD-TYPE" "REG3G WILD-TYPE" 
     TCGA-55-5899      TCGA-55-6543      TCGA-55-6642      TCGA-55-6712 
  "REG3G MUTATED" "REG3G WILD-TYPE" "REG3G WILD-TYPE" "REG3G WILD-TYPE" 
     TCGA-64-1676      TCGA-64-1677      TCGA-64-1678      TCGA-64-1680 
"REG3G WILD-TYPE" "REG3G WILD-TYPE" "REG3G WILD-TYPE" "REG3G WILD-TYPE" 
     TCGA-64-5774      TCGA-64-5775      TCGA-64-5778      TCGA-64-5779 
"REG3G WILD-TYPE" "REG3G WILD-TYPE"   "REG3G MUTATED" "REG3G WILD-TYPE" 
     TCGA-64-5781      TCGA-64-5815      TCGA-67-3770      TCGA-67-3771 
"REG3G WILD-TYPE" "REG3G WILD-TYPE" "REG3G WILD-TYPE" "REG3G WILD-TYPE" 
     TCGA-67-3772      TCGA-67-3773      TCGA-67-3774      TCGA-67-6215 
"REG3G WILD-TYPE" "REG3G WILD-TYPE" "REG3G WILD-TYPE" "REG3G WILD-TYPE" 
     TCGA-67-6216      TCGA-67-6217      TCGA-71-6725      TCGA-73-4658 
"REG3G WILD-TYPE" "REG3G WILD-TYPE" "REG3G WILD-TYPE" "REG3G WILD-TYPE" 
     TCGA-73-4659      TCGA-73-4662      TCGA-73-4666      TCGA-73-4668 
"REG3G WILD-TYPE" "REG3G WILD-TYPE" "REG3G WILD-TYPE" "REG3G WILD-TYPE" 
     TCGA-73-4670      TCGA-73-4675      TCGA-73-4676      TCGA-73-4677 
"REG3G WILD-TYPE" "REG3G WILD-TYPE" "REG3G WILD-TYPE" "REG3G WILD-TYPE" 
     TCGA-91-6828      TCGA-91-6829      TCGA-91-6831      TCGA-91-6835 
"REG3G WILD-TYPE" "REG3G WILD-TYPE" "REG3G WILD-TYPE" "REG3G WILD-TYPE" 
     TCGA-91-6836 
"REG3G WILD-TYPE" 
     TCGA-05-4249      TCGA-05-4250      TCGA-05-4382      TCGA-05-4384 
"REG3G WILD-TYPE" "REG3G WILD-TYPE" "REG3G WILD-TYPE" "REG3G WILD-TYPE" 
     TCGA-05-4390      TCGA-05-4396      TCGA-05-4397      TCGA-05-4398 
  "REG3G MUTATED" "REG3G WILD-TYPE" "REG3G WILD-TYPE" "REG3G WILD-TYPE" 
     TCGA-05-4402      TCGA-05-4405      TCGA-05-4415      TCGA-05-4417 
"REG3G WILD-TYPE" "REG3G WILD-TYPE" "REG3G WILD-TYPE" "REG3G WILD-TYPE" 
     TCGA-05-4418      TCGA-05-4420      TCGA-05-4424      TCGA-05-4426 
"REG3G WILD-TYPE" "REG3G WILD-TYPE"   "REG3G MUTATED" "REG3G WILD-TYPE" 
     TCGA-05-4427      TCGA-05-4430      TCGA-05-4432      TCGA-05-4433 
"REG3G WILD-TYPE" "REG3G WILD-TYPE"   "REG3G MUTATED" "REG3G WILD-TYPE" 
     TCGA-05-4434      TCGA-05-5420      TCGA-05-5423      TCGA-05-5425 
"REG3G WILD-TYPE" "REG3G WILD-TYPE" "REG3G WILD-TYPE" "REG3G WILD-TYPE" 
     TCGA-05-5429      TCGA-05-5715      TCGA-35-3615      TCGA-35-4122 
"REG3G WILD-TYPE" "REG3G WILD-TYPE" "REG3G WILD-TYPE" "REG3G WILD-TYPE" 
     TCGA-35-4123      TCGA-35-5375      TCGA-38-4625      TCGA-38-4626 
"REG3G WILD-TYPE" "REG3G WILD-TYPE" "REG3G WILD-TYPE" "REG3G WILD-TYPE" 
     TCGA-38-4627      TCGA-38-4628      TCGA-38-4629      TCGA-38-4630 
"REG3G WILD-TYPE" "REG3G WILD-TYPE" "REG3G WILD-TYPE" "REG3G WILD-TYPE" 
     TCGA-38-4631      TCGA-38-4632      TCGA-38-6178      TCGA-44-2655 
"REG3G WILD-TYPE"   "REG3G MUTATED" "REG3G WILD-TYPE" "REG3G WILD-TYPE" 
     TCGA-44-2656      TCGA-44-2657      TCGA-44-2659      TCGA-44-2661 
"REG3G WILD-TYPE" "REG3G WILD-TYPE" "REG3G WILD-TYPE" "REG3G WILD-TYPE" 
     TCGA-44-2662      TCGA-44-2665      TCGA-44-2666      TCGA-44-2668 
"REG3G WILD-TYPE" "REG3G WILD-TYPE" "REG3G WILD-TYPE" "REG3G WILD-TYPE" 
     TCGA-44-3396      TCGA-44-3398      TCGA-44-3918      TCGA-44-3919 
"REG3G WILD-TYPE" "REG3G WILD-TYPE" "REG3G WILD-TYPE" "REG3G WILD-TYPE" 
     TCGA-44-4112      TCGA-44-5643      TCGA-44-5645      TCGA-44-6144 
"REG3G WILD-TYPE" "REG3G WILD-TYPE" "REG3G WILD-TYPE" "REG3G WILD-TYPE" 
     TCGA-44-6145      TCGA-44-6146      TCGA-44-6147      TCGA-44-6148 
"REG3G WILD-TYPE" "REG3G WILD-TYPE" "REG3G WILD-TYPE" "REG3G WILD-TYPE" 
     TCGA-44-6774      TCGA-44-6775      TCGA-44-6776      TCGA-44-6777 
"REG3G WILD-TYPE" "REG3G WILD-TYPE" "REG3G WILD-TYPE" "REG3G WILD-TYPE" 
     TCGA-44-6778      TCGA-44-6779      TCGA-49-4486      TCGA-49-4487 
"REG3G WILD-TYPE" "REG3G WILD-TYPE" "REG3G WILD-TYPE" "REG3G WILD-TYPE" 
     TCGA-49-4488      TCGA-49-4490      TCGA-49-4494      TCGA-49-4501 
"REG3G WILD-TYPE" "REG3G WILD-TYPE" "REG3G WILD-TYPE" "REG3G WILD-TYPE" 
     TCGA-49-4505      TCGA-49-4506      TCGA-49-4507      TCGA-49-4510 
"REG3G WILD-TYPE" "REG3G WILD-TYPE" "REG3G WILD-TYPE" "REG3G WILD-TYPE" 
     TCGA-49-4512      TCGA-49-4514      TCGA-49-6742      TCGA-49-6743 
"REG3G WILD-TYPE" "REG3G WILD-TYPE" "REG3G WILD-TYPE"   "REG3G MUTATED" 
     TCGA-49-6744      TCGA-49-6745      TCGA-50-5044      TCGA-50-5045 
"REG3G WILD-TYPE" "REG3G WILD-TYPE" "REG3G WILD-TYPE" "REG3G WILD-TYPE" 
     TCGA-50-5049      TCGA-50-5051      TCGA-50-5055      TCGA-50-5066 
"REG3G WILD-TYPE" "REG3G WILD-TYPE" "REG3G WILD-TYPE" "REG3G WILD-TYPE" 
     TCGA-50-5068      TCGA-50-5072      TCGA-50-5930      TCGA-50-5931 
"REG3G WILD-TYPE" "REG3G WILD-TYPE" "REG3G WILD-TYPE"   "REG3G MUTATED" 
     TCGA-50-5932      TCGA-50-5933      TCGA-50-5935      TCGA-50-5936 
"REG3G WILD-TYPE" "REG3G WILD-TYPE" "REG3G WILD-TYPE" "REG3G WILD-TYPE" 
     TCGA-50-5939      TCGA-50-5941      TCGA-50-5942      TCGA-50-5944 
"REG3G WILD-TYPE" "REG3G WILD-TYPE" "REG3G WILD-TYPE" "REG3G WILD-TYPE" 
     TCGA-50-5946      TCGA-50-6590      TCGA-50-6591      TCGA-50-6592 
"REG3G WILD-TYPE" "REG3G WILD-TYPE" "REG3G WILD-TYPE" "REG3G WILD-TYPE" 
     TCGA-50-6593      TCGA-50-6594      TCGA-50-6595      TCGA-50-6597 
"REG3G WILD-TYPE" "REG3G WILD-TYPE" "REG3G WILD-TYPE" "REG3G WILD-TYPE" 
     TCGA-55-1592      TCGA-55-1594      TCGA-55-1595      TCGA-55-1596 
"REG3G WILD-TYPE" "REG3G WILD-TYPE" "REG3G WILD-TYPE" "REG3G WILD-TYPE" 
     TCGA-55-5899      TCGA-55-6543      TCGA-55-6642      TCGA-55-6712 
  "REG3G MUTATED" "REG3G WILD-TYPE" "REG3G WILD-TYPE" "REG3G WILD-TYPE" 
     TCGA-64-1676      TCGA-64-1677      TCGA-64-1678      TCGA-64-1680 
"REG3G WILD-TYPE" "REG3G WILD-TYPE" "REG3G WILD-TYPE" "REG3G WILD-TYPE" 
     TCGA-64-5774      TCGA-64-5775      TCGA-64-5778      TCGA-64-5779 
"REG3G WILD-TYPE" "REG3G WILD-TYPE"   "REG3G MUTATED" "REG3G WILD-TYPE" 
     TCGA-64-5781      TCGA-64-5815      TCGA-67-3770      TCGA-67-3771 
"REG3G WILD-TYPE" "REG3G WILD-TYPE" "REG3G WILD-TYPE" "REG3G WILD-TYPE" 
     TCGA-67-3772      TCGA-67-3773      TCGA-67-3774      TCGA-67-6215 
"REG3G WILD-TYPE" "REG3G WILD-TYPE" "REG3G WILD-TYPE" "REG3G WILD-TYPE" 
     TCGA-67-6216      TCGA-67-6217      TCGA-71-6725      TCGA-73-4658 
"REG3G WILD-TYPE" "REG3G WILD-TYPE" "REG3G WILD-TYPE" "REG3G WILD-TYPE" 
     TCGA-73-4659      TCGA-73-4662      TCGA-73-4666      TCGA-73-4668 
"REG3G WILD-TYPE" "REG3G WILD-TYPE" "REG3G WILD-TYPE" "REG3G WILD-TYPE" 
     TCGA-73-4670      TCGA-73-4675      TCGA-73-4676      TCGA-73-4677 
"REG3G WILD-TYPE" "REG3G WILD-TYPE" "REG3G WILD-TYPE" "REG3G WILD-TYPE" 
     TCGA-91-6828      TCGA-91-6829      TCGA-91-6831      TCGA-91-6835 
"REG3G WILD-TYPE" "REG3G WILD-TYPE" "REG3G WILD-TYPE" "REG3G WILD-TYPE" 
     TCGA-91-6836 
"REG3G WILD-TYPE" 
[1] "hr=" "1.6"
D280V2, continuous
D280V3, binary
[1] "tbl2"
                 cls
clus              [,1] [,2]
  REG3G MUTATED      3    6
  REG3G WILD-TYPE   90   73
        clus
vv       REG3G MUTATED REG3G WILD-TYPE
  FEMALE             3              90
  MALE               6              73
D280V4, continuous
[1] "Remove cluster labels:" "REG3G MUTATED"         
clus
  REG3G MUTATED REG3G WILD-TYPE 
              1              11 
     TCGA-35-4122      TCGA-35-4123      TCGA-35-5375      TCGA-64-1677 
"REG3G WILD-TYPE" "REG3G WILD-TYPE" "REG3G WILD-TYPE" "REG3G WILD-TYPE" 
     TCGA-71-6725      TCGA-73-4659      TCGA-73-4662      TCGA-73-4666 
"REG3G WILD-TYPE" "REG3G WILD-TYPE" "REG3G WILD-TYPE" "REG3G WILD-TYPE" 
     TCGA-73-4668      TCGA-73-4676      TCGA-75-5122 
"REG3G WILD-TYPE" "REG3G WILD-TYPE" "REG3G WILD-TYPE" 
D280V5, multiclass
D280V6, multiclass
    clus
vv   REG3G MUTATED REG3G WILD-TYPE
  T1             3              38
  T2             5             103
  T3             1              13
  T4             0               8
D280V7, multiclass
       clus
vv      REG3G MUTATED REG3G WILD-TYPE
  N0                4              91
  N1                4              33
  N2+N3             1              34
D280V8, multiclass
    clus
vv   REG3G MUTATED REG3G WILD-TYPE
  M0             7             130
  M1             1               8
  MX             1              21
D280V9, multiclass
     clus
vv    REG3G MUTATED REG3G WILD-TYPE
  I               4              84
  II              3              30
  III             1              38
  IV              1               8
D280V10, binary
[1] "tbl2"
                 cls
clus              [,1] [,2]
  REG3G MUTATED      0    9
  REG3G WILD-TYPE   16  147
     clus
vv    REG3G MUTATED REG3G WILD-TYPE
  NO              0              16
  YES             9             147
D280V11, continuous
D280V12, continuous
D280V13, multiclass
                                             clus
vv                                            REG3G MUTATED REG3G WILD-TYPE
  CURRENT REFORMED SMOKER FOR < OR = 15 YEARS             5              57
  CURRENT REFORMED SMOKER FOR > 15 YEARS                  1              45
  CURRENT SMOKER                                          2              26
  LIFELONG NON-SMOKER                                     0              24
D280V14, continuous

Clustering(281) Variable = ANKRD56 MUTATION ANALYSIS
D281V1, survival
                   sevent
clus2                0  1
  ANKRD56 MUTATED    8  2
  ANKRD56 WILD-TYPE 91 48
  ANKRD56 MUTATED ANKRD56 WILD-TYPE 
               10               139 
  ANKRD56 MUTATED ANKRD56 WILD-TYPE 
                2                48 
$`ANKRD56 MUTATED`
TCGA-05-4382 TCGA-05-4396 TCGA-05-4398 TCGA-05-5420 TCGA-05-5423 TCGA-38-4631 
       19.92         9.96        47.05         1.02         4.96        11.64 
TCGA-55-1595 TCGA-55-6642 TCGA-64-5779 TCGA-64-5781 
       48.62        32.61        16.67        39.52 

$`ANKRD56 WILD-TYPE`
TCGA-05-4249 TCGA-05-4250 TCGA-05-4384 TCGA-05-4390 TCGA-05-4397 TCGA-05-4402 
       38.07         3.98        14.01        37.02        24.03         8.02 
TCGA-05-4405 TCGA-05-4415 TCGA-05-4417 TCGA-05-4418 TCGA-05-4420 TCGA-05-4424 
       20.05         2.96        14.93         8.98        29.95        30.02 
TCGA-05-4426 TCGA-05-4427 TCGA-05-4430 TCGA-05-4432 TCGA-05-4433 TCGA-05-4434 
       26.01        26.01        25.02        25.02        24.00        15.02 
TCGA-05-5425 TCGA-05-5429 TCGA-05-5715 TCGA-35-3615 TCGA-35-4122 TCGA-35-4123 
        2.96         0.99         2.04         0.46         7.36         5.95 
TCGA-35-5375 TCGA-38-4625 TCGA-38-4626 TCGA-38-4627 TCGA-38-4628 TCGA-38-4629 
        8.68        47.61        85.32        37.71        49.02        28.37 
TCGA-38-4630 TCGA-38-4632 TCGA-38-6178 TCGA-44-2655 TCGA-44-2656 TCGA-44-2657 
       35.28        44.61         5.19        18.87        19.10        13.15 
TCGA-44-2659 TCGA-44-2661 TCGA-44-2662 TCGA-44-2665 TCGA-44-2666 TCGA-44-2668 
       17.39         3.39        15.78        13.15         3.19         8.09 
TCGA-44-3396 TCGA-44-3398 TCGA-44-3918 TCGA-44-3919 TCGA-44-4112 TCGA-44-5643 
       10.22         8.32         6.44         6.21         4.60         3.48 
TCGA-44-5645 TCGA-44-6144 TCGA-44-6145 TCGA-44-6146 TCGA-44-6147 TCGA-44-6148 
        6.84         0.30         3.35         9.93         7.76         3.12 
TCGA-44-6774 TCGA-44-6775 TCGA-44-6776 TCGA-44-6777 TCGA-44-6778 TCGA-44-6779 
        5.42         2.70        63.72        32.45        36.49        16.41 
TCGA-49-4486 TCGA-49-4487 TCGA-49-4488 TCGA-49-4490 TCGA-49-4494 TCGA-49-4501 
       76.21        28.11        28.57        12.66        35.54        46.72 
TCGA-49-4505 TCGA-49-4506 TCGA-49-4507 TCGA-49-4510 TCGA-49-4512 TCGA-49-4514 
       14.07        32.84         8.81        29.46        29.75        43.20 
TCGA-49-6742 TCGA-49-6743 TCGA-49-6744 TCGA-49-6745 TCGA-50-5044 TCGA-50-5045 
       15.02        12.13        12.99         4.93        20.48        71.47 
TCGA-50-5049 TCGA-50-5051 TCGA-50-5055 TCGA-50-5066 TCGA-50-5068 TCGA-50-5072 
       48.82        14.96        25.81         9.76        49.28         8.05 
TCGA-50-5930 TCGA-50-5931 TCGA-50-5932 TCGA-50-5933 TCGA-50-5935 TCGA-50-5936 
        9.27         8.78        35.87        77.88        21.47         8.45 
TCGA-50-5939 TCGA-50-5941 TCGA-50-5942 TCGA-50-5944 TCGA-50-5946 TCGA-50-6590 
       15.12         9.37         4.44        12.26        11.47        42.31 
TCGA-50-6591 TCGA-50-6592 TCGA-50-6593 TCGA-50-6594 TCGA-50-6595 TCGA-50-6597 
        3.88        25.51        11.05        12.16         6.21        33.37 
TCGA-55-1592 TCGA-55-1594 TCGA-55-1596 TCGA-55-5899 TCGA-55-6543 TCGA-55-6712 
       23.05        38.73        45.17         2.86         0.07         0.79 
TCGA-64-1676 TCGA-64-1677 TCGA-64-1678 TCGA-64-1680 TCGA-64-5774 TCGA-64-5775 
       56.81        20.65        39.09        37.02        83.84         0.10 
TCGA-64-5778 TCGA-64-5815 TCGA-67-3770 TCGA-67-3771 TCGA-67-3772 TCGA-67-3773 
       30.44         7.33         0.99         1.97         0.59         2.04 
TCGA-67-3774 TCGA-67-6215 TCGA-67-6216 TCGA-67-6217 TCGA-71-6725 TCGA-73-4658 
        0.59         0.89         0.69        13.87         2.01        52.57 
TCGA-73-4659 TCGA-73-4662 TCGA-73-4666 TCGA-73-4668 TCGA-73-4670 TCGA-73-4675 
       23.38        29.95        20.28        15.35         0.46         1.32 
TCGA-73-4676 TCGA-73-4677 TCGA-91-6828 TCGA-91-6829 TCGA-91-6831 TCGA-91-6835 
        4.01         1.25         1.22        41.33         1.28         1.15 
TCGA-91-6836 
        0.36 

  ANKRD56 MUTATED ANKRD56 WILD-TYPE 
             1.02              0.07 
  ANKRD56 MUTATED ANKRD56 WILD-TYPE 
            48.62             85.32 
  ANKRD56 MUTATED ANKRD56 WILD-TYPE 
           18.295            13.150 
[1] "1.0 - 48.6 (18.3)" "0.1 - 85.3 (13.2)"
       TCGA-05-4249        TCGA-05-4250        TCGA-05-4382        TCGA-05-4384 
"ANKRD56 WILD-TYPE" "ANKRD56 WILD-TYPE"   "ANKRD56 MUTATED" "ANKRD56 WILD-TYPE" 
       TCGA-05-4390        TCGA-05-4396        TCGA-05-4397        TCGA-05-4398 
"ANKRD56 WILD-TYPE"   "ANKRD56 MUTATED" "ANKRD56 WILD-TYPE"   "ANKRD56 MUTATED" 
       TCGA-05-4402        TCGA-05-4405        TCGA-05-4415        TCGA-05-4417 
"ANKRD56 WILD-TYPE" "ANKRD56 WILD-TYPE" "ANKRD56 WILD-TYPE" "ANKRD56 WILD-TYPE" 
       TCGA-05-4418        TCGA-05-4420        TCGA-05-4424        TCGA-05-4426 
"ANKRD56 WILD-TYPE" "ANKRD56 WILD-TYPE" "ANKRD56 WILD-TYPE" "ANKRD56 WILD-TYPE" 
       TCGA-05-4427        TCGA-05-4430        TCGA-05-4432        TCGA-05-4433 
"ANKRD56 WILD-TYPE" "ANKRD56 WILD-TYPE" "ANKRD56 WILD-TYPE" "ANKRD56 WILD-TYPE" 
       TCGA-05-4434        TCGA-05-5420        TCGA-05-5423        TCGA-05-5425 
"ANKRD56 WILD-TYPE"   "ANKRD56 MUTATED"   "ANKRD56 MUTATED" "ANKRD56 WILD-TYPE" 
       TCGA-05-5429        TCGA-05-5715        TCGA-35-3615        TCGA-35-4122 
"ANKRD56 WILD-TYPE" "ANKRD56 WILD-TYPE" "ANKRD56 WILD-TYPE" "ANKRD56 WILD-TYPE" 
       TCGA-35-4123        TCGA-35-5375        TCGA-38-4625        TCGA-38-4626 
"ANKRD56 WILD-TYPE" "ANKRD56 WILD-TYPE" "ANKRD56 WILD-TYPE" "ANKRD56 WILD-TYPE" 
       TCGA-38-4627        TCGA-38-4628        TCGA-38-4629        TCGA-38-4630 
"ANKRD56 WILD-TYPE" "ANKRD56 WILD-TYPE" "ANKRD56 WILD-TYPE" "ANKRD56 WILD-TYPE" 
       TCGA-38-4631        TCGA-38-4632        TCGA-38-6178        TCGA-44-2655 
  "ANKRD56 MUTATED" "ANKRD56 WILD-TYPE" "ANKRD56 WILD-TYPE" "ANKRD56 WILD-TYPE" 
       TCGA-44-2656        TCGA-44-2657        TCGA-44-2659        TCGA-44-2661 
"ANKRD56 WILD-TYPE" "ANKRD56 WILD-TYPE" "ANKRD56 WILD-TYPE" "ANKRD56 WILD-TYPE" 
       TCGA-44-2662        TCGA-44-2665        TCGA-44-2666        TCGA-44-2668 
"ANKRD56 WILD-TYPE" "ANKRD56 WILD-TYPE" "ANKRD56 WILD-TYPE" "ANKRD56 WILD-TYPE" 
       TCGA-44-3396        TCGA-44-3398        TCGA-44-3918        TCGA-44-3919 
"ANKRD56 WILD-TYPE" "ANKRD56 WILD-TYPE" "ANKRD56 WILD-TYPE" "ANKRD56 WILD-TYPE" 
       TCGA-44-4112        TCGA-44-5643        TCGA-44-5645        TCGA-44-6144 
"ANKRD56 WILD-TYPE" "ANKRD56 WILD-TYPE" "ANKRD56 WILD-TYPE" "ANKRD56 WILD-TYPE" 
       TCGA-44-6145        TCGA-44-6146        TCGA-44-6147        TCGA-44-6148 
"ANKRD56 WILD-TYPE" "ANKRD56 WILD-TYPE" "ANKRD56 WILD-TYPE" "ANKRD56 WILD-TYPE" 
       TCGA-44-6774        TCGA-44-6775        TCGA-44-6776        TCGA-44-6777 
"ANKRD56 WILD-TYPE" "ANKRD56 WILD-TYPE" "ANKRD56 WILD-TYPE" "ANKRD56 WILD-TYPE" 
       TCGA-44-6778        TCGA-44-6779        TCGA-49-4486        TCGA-49-4487 
"ANKRD56 WILD-TYPE" "ANKRD56 WILD-TYPE" "ANKRD56 WILD-TYPE" "ANKRD56 WILD-TYPE" 
       TCGA-49-4488        TCGA-49-4490        TCGA-49-4494        TCGA-49-4501 
"ANKRD56 WILD-TYPE" "ANKRD56 WILD-TYPE" "ANKRD56 WILD-TYPE" "ANKRD56 WILD-TYPE" 
       TCGA-49-4505        TCGA-49-4506        TCGA-49-4507        TCGA-49-4510 
"ANKRD56 WILD-TYPE" "ANKRD56 WILD-TYPE" "ANKRD56 WILD-TYPE" "ANKRD56 WILD-TYPE" 
       TCGA-49-4512        TCGA-49-4514        TCGA-49-6742        TCGA-49-6743 
"ANKRD56 WILD-TYPE" "ANKRD56 WILD-TYPE" "ANKRD56 WILD-TYPE" "ANKRD56 WILD-TYPE" 
       TCGA-49-6744        TCGA-49-6745        TCGA-50-5044        TCGA-50-5045 
"ANKRD56 WILD-TYPE" "ANKRD56 WILD-TYPE" "ANKRD56 WILD-TYPE" "ANKRD56 WILD-TYPE" 
       TCGA-50-5049        TCGA-50-5051        TCGA-50-5055        TCGA-50-5066 
"ANKRD56 WILD-TYPE" "ANKRD56 WILD-TYPE" "ANKRD56 WILD-TYPE" "ANKRD56 WILD-TYPE" 
       TCGA-50-5068        TCGA-50-5072        TCGA-50-5930        TCGA-50-5931 
"ANKRD56 WILD-TYPE" "ANKRD56 WILD-TYPE" "ANKRD56 WILD-TYPE" "ANKRD56 WILD-TYPE" 
       TCGA-50-5932        TCGA-50-5933        TCGA-50-5935        TCGA-50-5936 
"ANKRD56 WILD-TYPE" "ANKRD56 WILD-TYPE" "ANKRD56 WILD-TYPE" "ANKRD56 WILD-TYPE" 
       TCGA-50-5939        TCGA-50-5941        TCGA-50-5942        TCGA-50-5944 
"ANKRD56 WILD-TYPE" "ANKRD56 WILD-TYPE" "ANKRD56 WILD-TYPE" "ANKRD56 WILD-TYPE" 
       TCGA-50-5946        TCGA-50-6590        TCGA-50-6591        TCGA-50-6592 
"ANKRD56 WILD-TYPE" "ANKRD56 WILD-TYPE" "ANKRD56 WILD-TYPE" "ANKRD56 WILD-TYPE" 
       TCGA-50-6593        TCGA-50-6594        TCGA-50-6595        TCGA-50-6597 
"ANKRD56 WILD-TYPE" "ANKRD56 WILD-TYPE" "ANKRD56 WILD-TYPE" "ANKRD56 WILD-TYPE" 
       TCGA-55-1592        TCGA-55-1594        TCGA-55-1595        TCGA-55-1596 
"ANKRD56 WILD-TYPE" "ANKRD56 WILD-TYPE"   "ANKRD56 MUTATED" "ANKRD56 WILD-TYPE" 
       TCGA-55-5899        TCGA-55-6543        TCGA-55-6642        TCGA-55-6712 
"ANKRD56 WILD-TYPE" "ANKRD56 WILD-TYPE"   "ANKRD56 MUTATED" "ANKRD56 WILD-TYPE" 
       TCGA-64-1676        TCGA-64-1677        TCGA-64-1678        TCGA-64-1680 
"ANKRD56 WILD-TYPE" "ANKRD56 WILD-TYPE" "ANKRD56 WILD-TYPE" "ANKRD56 WILD-TYPE" 
       TCGA-64-5774        TCGA-64-5775        TCGA-64-5778        TCGA-64-5779 
"ANKRD56 WILD-TYPE" "ANKRD56 WILD-TYPE" "ANKRD56 WILD-TYPE"   "ANKRD56 MUTATED" 
       TCGA-64-5781        TCGA-64-5815        TCGA-67-3770        TCGA-67-3771 
  "ANKRD56 MUTATED" "ANKRD56 WILD-TYPE" "ANKRD56 WILD-TYPE" "ANKRD56 WILD-TYPE" 
       TCGA-67-3772        TCGA-67-3773        TCGA-67-3774        TCGA-67-6215 
"ANKRD56 WILD-TYPE" "ANKRD56 WILD-TYPE" "ANKRD56 WILD-TYPE" "ANKRD56 WILD-TYPE" 
       TCGA-67-6216        TCGA-67-6217        TCGA-71-6725        TCGA-73-4658 
"ANKRD56 WILD-TYPE" "ANKRD56 WILD-TYPE" "ANKRD56 WILD-TYPE" "ANKRD56 WILD-TYPE" 
       TCGA-73-4659        TCGA-73-4662        TCGA-73-4666        TCGA-73-4668 
"ANKRD56 WILD-TYPE" "ANKRD56 WILD-TYPE" "ANKRD56 WILD-TYPE" "ANKRD56 WILD-TYPE" 
       TCGA-73-4670        TCGA-73-4675        TCGA-73-4676        TCGA-73-4677 
"ANKRD56 WILD-TYPE" "ANKRD56 WILD-TYPE" "ANKRD56 WILD-TYPE" "ANKRD56 WILD-TYPE" 
       TCGA-91-6828        TCGA-91-6829        TCGA-91-6831        TCGA-91-6835 
"ANKRD56 WILD-TYPE" "ANKRD56 WILD-TYPE" "ANKRD56 WILD-TYPE" "ANKRD56 WILD-TYPE" 
       TCGA-91-6836 
"ANKRD56 WILD-TYPE" 
       TCGA-05-4249        TCGA-05-4250        TCGA-05-4382        TCGA-05-4384 
"ANKRD56 WILD-TYPE" "ANKRD56 WILD-TYPE"   "ANKRD56 MUTATED" "ANKRD56 WILD-TYPE" 
       TCGA-05-4390        TCGA-05-4396        TCGA-05-4397        TCGA-05-4398 
"ANKRD56 WILD-TYPE"   "ANKRD56 MUTATED" "ANKRD56 WILD-TYPE"   "ANKRD56 MUTATED" 
       TCGA-05-4402        TCGA-05-4405        TCGA-05-4415        TCGA-05-4417 
"ANKRD56 WILD-TYPE" "ANKRD56 WILD-TYPE" "ANKRD56 WILD-TYPE" "ANKRD56 WILD-TYPE" 
       TCGA-05-4418        TCGA-05-4420        TCGA-05-4424        TCGA-05-4426 
"ANKRD56 WILD-TYPE" "ANKRD56 WILD-TYPE" "ANKRD56 WILD-TYPE" "ANKRD56 WILD-TYPE" 
       TCGA-05-4427        TCGA-05-4430        TCGA-05-4432        TCGA-05-4433 
"ANKRD56 WILD-TYPE" "ANKRD56 WILD-TYPE" "ANKRD56 WILD-TYPE" "ANKRD56 WILD-TYPE" 
       TCGA-05-4434        TCGA-05-5420        TCGA-05-5423        TCGA-05-5425 
"ANKRD56 WILD-TYPE"   "ANKRD56 MUTATED"   "ANKRD56 MUTATED" "ANKRD56 WILD-TYPE" 
       TCGA-05-5429        TCGA-05-5715        TCGA-35-3615        TCGA-35-4122 
"ANKRD56 WILD-TYPE" "ANKRD56 WILD-TYPE" "ANKRD56 WILD-TYPE" "ANKRD56 WILD-TYPE" 
       TCGA-35-4123        TCGA-35-5375        TCGA-38-4625        TCGA-38-4626 
"ANKRD56 WILD-TYPE" "ANKRD56 WILD-TYPE" "ANKRD56 WILD-TYPE" "ANKRD56 WILD-TYPE" 
       TCGA-38-4627        TCGA-38-4628        TCGA-38-4629        TCGA-38-4630 
"ANKRD56 WILD-TYPE" "ANKRD56 WILD-TYPE" "ANKRD56 WILD-TYPE" "ANKRD56 WILD-TYPE" 
       TCGA-38-4631        TCGA-38-4632        TCGA-38-6178        TCGA-44-2655 
  "ANKRD56 MUTATED" "ANKRD56 WILD-TYPE" "ANKRD56 WILD-TYPE" "ANKRD56 WILD-TYPE" 
       TCGA-44-2656        TCGA-44-2657        TCGA-44-2659        TCGA-44-2661 
"ANKRD56 WILD-TYPE" "ANKRD56 WILD-TYPE" "ANKRD56 WILD-TYPE" "ANKRD56 WILD-TYPE" 
       TCGA-44-2662        TCGA-44-2665        TCGA-44-2666        TCGA-44-2668 
"ANKRD56 WILD-TYPE" "ANKRD56 WILD-TYPE" "ANKRD56 WILD-TYPE" "ANKRD56 WILD-TYPE" 
       TCGA-44-3396        TCGA-44-3398        TCGA-44-3918        TCGA-44-3919 
"ANKRD56 WILD-TYPE" "ANKRD56 WILD-TYPE" "ANKRD56 WILD-TYPE" "ANKRD56 WILD-TYPE" 
       TCGA-44-4112        TCGA-44-5643        TCGA-44-5645        TCGA-44-6144 
"ANKRD56 WILD-TYPE" "ANKRD56 WILD-TYPE" "ANKRD56 WILD-TYPE" "ANKRD56 WILD-TYPE" 
       TCGA-44-6145        TCGA-44-6146        TCGA-44-6147        TCGA-44-6148 
"ANKRD56 WILD-TYPE" "ANKRD56 WILD-TYPE" "ANKRD56 WILD-TYPE" "ANKRD56 WILD-TYPE" 
       TCGA-44-6774        TCGA-44-6775        TCGA-44-6776        TCGA-44-6777 
"ANKRD56 WILD-TYPE" "ANKRD56 WILD-TYPE" "ANKRD56 WILD-TYPE" "ANKRD56 WILD-TYPE" 
       TCGA-44-6778        TCGA-44-6779        TCGA-49-4486        TCGA-49-4487 
"ANKRD56 WILD-TYPE" "ANKRD56 WILD-TYPE" "ANKRD56 WILD-TYPE" "ANKRD56 WILD-TYPE" 
       TCGA-49-4488        TCGA-49-4490        TCGA-49-4494        TCGA-49-4501 
"ANKRD56 WILD-TYPE" "ANKRD56 WILD-TYPE" "ANKRD56 WILD-TYPE" "ANKRD56 WILD-TYPE" 
       TCGA-49-4505        TCGA-49-4506        TCGA-49-4507        TCGA-49-4510 
"ANKRD56 WILD-TYPE" "ANKRD56 WILD-TYPE" "ANKRD56 WILD-TYPE" "ANKRD56 WILD-TYPE" 
       TCGA-49-4512        TCGA-49-4514        TCGA-49-6742        TCGA-49-6743 
"ANKRD56 WILD-TYPE" "ANKRD56 WILD-TYPE" "ANKRD56 WILD-TYPE" "ANKRD56 WILD-TYPE" 
       TCGA-49-6744        TCGA-49-6745        TCGA-50-5044        TCGA-50-5045 
"ANKRD56 WILD-TYPE" "ANKRD56 WILD-TYPE" "ANKRD56 WILD-TYPE" "ANKRD56 WILD-TYPE" 
       TCGA-50-5049        TCGA-50-5051        TCGA-50-5055        TCGA-50-5066 
"ANKRD56 WILD-TYPE" "ANKRD56 WILD-TYPE" "ANKRD56 WILD-TYPE" "ANKRD56 WILD-TYPE" 
       TCGA-50-5068        TCGA-50-5072        TCGA-50-5930        TCGA-50-5931 
"ANKRD56 WILD-TYPE" "ANKRD56 WILD-TYPE" "ANKRD56 WILD-TYPE" "ANKRD56 WILD-TYPE" 
       TCGA-50-5932        TCGA-50-5933        TCGA-50-5935        TCGA-50-5936 
"ANKRD56 WILD-TYPE" "ANKRD56 WILD-TYPE" "ANKRD56 WILD-TYPE" "ANKRD56 WILD-TYPE" 
       TCGA-50-5939        TCGA-50-5941        TCGA-50-5942        TCGA-50-5944 
"ANKRD56 WILD-TYPE" "ANKRD56 WILD-TYPE" "ANKRD56 WILD-TYPE" "ANKRD56 WILD-TYPE" 
       TCGA-50-5946        TCGA-50-6590        TCGA-50-6591        TCGA-50-6592 
"ANKRD56 WILD-TYPE" "ANKRD56 WILD-TYPE" "ANKRD56 WILD-TYPE" "ANKRD56 WILD-TYPE" 
       TCGA-50-6593        TCGA-50-6594        TCGA-50-6595        TCGA-50-6597 
"ANKRD56 WILD-TYPE" "ANKRD56 WILD-TYPE" "ANKRD56 WILD-TYPE" "ANKRD56 WILD-TYPE" 
       TCGA-55-1592        TCGA-55-1594        TCGA-55-1595        TCGA-55-1596 
"ANKRD56 WILD-TYPE" "ANKRD56 WILD-TYPE"   "ANKRD56 MUTATED" "ANKRD56 WILD-TYPE" 
       TCGA-55-5899        TCGA-55-6543        TCGA-55-6642        TCGA-55-6712 
"ANKRD56 WILD-TYPE" "ANKRD56 WILD-TYPE"   "ANKRD56 MUTATED" "ANKRD56 WILD-TYPE" 
       TCGA-64-1676        TCGA-64-1677        TCGA-64-1678        TCGA-64-1680 
"ANKRD56 WILD-TYPE" "ANKRD56 WILD-TYPE" "ANKRD56 WILD-TYPE" "ANKRD56 WILD-TYPE" 
       TCGA-64-5774        TCGA-64-5775        TCGA-64-5778        TCGA-64-5779 
"ANKRD56 WILD-TYPE" "ANKRD56 WILD-TYPE" "ANKRD56 WILD-TYPE"   "ANKRD56 MUTATED" 
       TCGA-64-5781        TCGA-64-5815        TCGA-67-3770        TCGA-67-3771 
  "ANKRD56 MUTATED" "ANKRD56 WILD-TYPE" "ANKRD56 WILD-TYPE" "ANKRD56 WILD-TYPE" 
       TCGA-67-3772        TCGA-67-3773        TCGA-67-3774        TCGA-67-6215 
"ANKRD56 WILD-TYPE" "ANKRD56 WILD-TYPE" "ANKRD56 WILD-TYPE" "ANKRD56 WILD-TYPE" 
       TCGA-67-6216        TCGA-67-6217        TCGA-71-6725        TCGA-73-4658 
"ANKRD56 WILD-TYPE" "ANKRD56 WILD-TYPE" "ANKRD56 WILD-TYPE" "ANKRD56 WILD-TYPE" 
       TCGA-73-4659        TCGA-73-4662        TCGA-73-4666        TCGA-73-4668 
"ANKRD56 WILD-TYPE" "ANKRD56 WILD-TYPE" "ANKRD56 WILD-TYPE" "ANKRD56 WILD-TYPE" 
       TCGA-73-4670        TCGA-73-4675        TCGA-73-4676        TCGA-73-4677 
"ANKRD56 WILD-TYPE" "ANKRD56 WILD-TYPE" "ANKRD56 WILD-TYPE" "ANKRD56 WILD-TYPE" 
       TCGA-91-6828        TCGA-91-6829        TCGA-91-6831        TCGA-91-6835 
"ANKRD56 WILD-TYPE" "ANKRD56 WILD-TYPE" "ANKRD56 WILD-TYPE" "ANKRD56 WILD-TYPE" 
       TCGA-91-6836 
"ANKRD56 WILD-TYPE" 
       TCGA-05-4249        TCGA-05-4250        TCGA-05-4382        TCGA-05-4384 
"ANKRD56 WILD-TYPE" "ANKRD56 WILD-TYPE"   "ANKRD56 MUTATED" "ANKRD56 WILD-TYPE" 
       TCGA-05-4390        TCGA-05-4396        TCGA-05-4397        TCGA-05-4398 
"ANKRD56 WILD-TYPE"   "ANKRD56 MUTATED" "ANKRD56 WILD-TYPE"   "ANKRD56 MUTATED" 
       TCGA-05-4402        TCGA-05-4405        TCGA-05-4415        TCGA-05-4417 
"ANKRD56 WILD-TYPE" "ANKRD56 WILD-TYPE" "ANKRD56 WILD-TYPE" "ANKRD56 WILD-TYPE" 
       TCGA-05-4418        TCGA-05-4420        TCGA-05-4424        TCGA-05-4426 
"ANKRD56 WILD-TYPE" "ANKRD56 WILD-TYPE" "ANKRD56 WILD-TYPE" "ANKRD56 WILD-TYPE" 
       TCGA-05-4427        TCGA-05-4430        TCGA-05-4432        TCGA-05-4433 
"ANKRD56 WILD-TYPE" "ANKRD56 WILD-TYPE" "ANKRD56 WILD-TYPE" "ANKRD56 WILD-TYPE" 
       TCGA-05-4434        TCGA-05-5420        TCGA-05-5423        TCGA-05-5425 
"ANKRD56 WILD-TYPE"   "ANKRD56 MUTATED"   "ANKRD56 MUTATED" "ANKRD56 WILD-TYPE" 
       TCGA-05-5429        TCGA-05-5715        TCGA-35-3615        TCGA-35-4122 
"ANKRD56 WILD-TYPE" "ANKRD56 WILD-TYPE" "ANKRD56 WILD-TYPE" "ANKRD56 WILD-TYPE" 
       TCGA-35-4123        TCGA-35-5375        TCGA-38-4625        TCGA-38-4626 
"ANKRD56 WILD-TYPE" "ANKRD56 WILD-TYPE" "ANKRD56 WILD-TYPE" "ANKRD56 WILD-TYPE" 
       TCGA-38-4627        TCGA-38-4628        TCGA-38-4629        TCGA-38-4630 
"ANKRD56 WILD-TYPE" "ANKRD56 WILD-TYPE" "ANKRD56 WILD-TYPE" "ANKRD56 WILD-TYPE" 
       TCGA-38-4631        TCGA-38-4632        TCGA-38-6178        TCGA-44-2655 
  "ANKRD56 MUTATED" "ANKRD56 WILD-TYPE" "ANKRD56 WILD-TYPE" "ANKRD56 WILD-TYPE" 
       TCGA-44-2656        TCGA-44-2657        TCGA-44-2659        TCGA-44-2661 
"ANKRD56 WILD-TYPE" "ANKRD56 WILD-TYPE" "ANKRD56 WILD-TYPE" "ANKRD56 WILD-TYPE" 
       TCGA-44-2662        TCGA-44-2665        TCGA-44-2666        TCGA-44-2668 
"ANKRD56 WILD-TYPE" "ANKRD56 WILD-TYPE" "ANKRD56 WILD-TYPE" "ANKRD56 WILD-TYPE" 
       TCGA-44-3396        TCGA-44-3398        TCGA-44-3918        TCGA-44-3919 
"ANKRD56 WILD-TYPE" "ANKRD56 WILD-TYPE" "ANKRD56 WILD-TYPE" "ANKRD56 WILD-TYPE" 
       TCGA-44-4112        TCGA-44-5643        TCGA-44-5645        TCGA-44-6144 
"ANKRD56 WILD-TYPE" "ANKRD56 WILD-TYPE" "ANKRD56 WILD-TYPE" "ANKRD56 WILD-TYPE" 
       TCGA-44-6145        TCGA-44-6146        TCGA-44-6147        TCGA-44-6148 
"ANKRD56 WILD-TYPE" "ANKRD56 WILD-TYPE" "ANKRD56 WILD-TYPE" "ANKRD56 WILD-TYPE" 
       TCGA-44-6774        TCGA-44-6775        TCGA-44-6776        TCGA-44-6777 
"ANKRD56 WILD-TYPE" "ANKRD56 WILD-TYPE" "ANKRD56 WILD-TYPE" "ANKRD56 WILD-TYPE" 
       TCGA-44-6778        TCGA-44-6779        TCGA-49-4486        TCGA-49-4487 
"ANKRD56 WILD-TYPE" "ANKRD56 WILD-TYPE" "ANKRD56 WILD-TYPE" "ANKRD56 WILD-TYPE" 
       TCGA-49-4488        TCGA-49-4490        TCGA-49-4494        TCGA-49-4501 
"ANKRD56 WILD-TYPE" "ANKRD56 WILD-TYPE" "ANKRD56 WILD-TYPE" "ANKRD56 WILD-TYPE" 
       TCGA-49-4505        TCGA-49-4506        TCGA-49-4507        TCGA-49-4510 
"ANKRD56 WILD-TYPE" "ANKRD56 WILD-TYPE" "ANKRD56 WILD-TYPE" "ANKRD56 WILD-TYPE" 
       TCGA-49-4512        TCGA-49-4514        TCGA-49-6742        TCGA-49-6743 
"ANKRD56 WILD-TYPE" "ANKRD56 WILD-TYPE" "ANKRD56 WILD-TYPE" "ANKRD56 WILD-TYPE" 
       TCGA-49-6744        TCGA-49-6745        TCGA-50-5044        TCGA-50-5045 
"ANKRD56 WILD-TYPE" "ANKRD56 WILD-TYPE" "ANKRD56 WILD-TYPE" "ANKRD56 WILD-TYPE" 
       TCGA-50-5049        TCGA-50-5051        TCGA-50-5055        TCGA-50-5066 
"ANKRD56 WILD-TYPE" "ANKRD56 WILD-TYPE" "ANKRD56 WILD-TYPE" "ANKRD56 WILD-TYPE" 
       TCGA-50-5068        TCGA-50-5072        TCGA-50-5930        TCGA-50-5931 
"ANKRD56 WILD-TYPE" "ANKRD56 WILD-TYPE" "ANKRD56 WILD-TYPE" "ANKRD56 WILD-TYPE" 
       TCGA-50-5932        TCGA-50-5933        TCGA-50-5935        TCGA-50-5936 
"ANKRD56 WILD-TYPE" "ANKRD56 WILD-TYPE" "ANKRD56 WILD-TYPE" "ANKRD56 WILD-TYPE" 
       TCGA-50-5939        TCGA-50-5941        TCGA-50-5942        TCGA-50-5944 
"ANKRD56 WILD-TYPE" "ANKRD56 WILD-TYPE" "ANKRD56 WILD-TYPE" "ANKRD56 WILD-TYPE" 
       TCGA-50-5946        TCGA-50-6590        TCGA-50-6591        TCGA-50-6592 
"ANKRD56 WILD-TYPE" "ANKRD56 WILD-TYPE" "ANKRD56 WILD-TYPE" "ANKRD56 WILD-TYPE" 
       TCGA-50-6593        TCGA-50-6594        TCGA-50-6595        TCGA-50-6597 
"ANKRD56 WILD-TYPE" "ANKRD56 WILD-TYPE" "ANKRD56 WILD-TYPE" "ANKRD56 WILD-TYPE" 
       TCGA-55-1592        TCGA-55-1594        TCGA-55-1595        TCGA-55-1596 
"ANKRD56 WILD-TYPE" "ANKRD56 WILD-TYPE"   "ANKRD56 MUTATED" "ANKRD56 WILD-TYPE" 
       TCGA-55-5899        TCGA-55-6543        TCGA-55-6642        TCGA-55-6712 
"ANKRD56 WILD-TYPE" "ANKRD56 WILD-TYPE"   "ANKRD56 MUTATED" "ANKRD56 WILD-TYPE" 
       TCGA-64-1676        TCGA-64-1677        TCGA-64-1678        TCGA-64-1680 
"ANKRD56 WILD-TYPE" "ANKRD56 WILD-TYPE" "ANKRD56 WILD-TYPE" "ANKRD56 WILD-TYPE" 
       TCGA-64-5774        TCGA-64-5775        TCGA-64-5778        TCGA-64-5779 
"ANKRD56 WILD-TYPE" "ANKRD56 WILD-TYPE" "ANKRD56 WILD-TYPE"   "ANKRD56 MUTATED" 
       TCGA-64-5781        TCGA-64-5815        TCGA-67-3770        TCGA-67-3771 
  "ANKRD56 MUTATED" "ANKRD56 WILD-TYPE" "ANKRD56 WILD-TYPE" "ANKRD56 WILD-TYPE" 
       TCGA-67-3772        TCGA-67-3773        TCGA-67-3774        TCGA-67-6215 
"ANKRD56 WILD-TYPE" "ANKRD56 WILD-TYPE" "ANKRD56 WILD-TYPE" "ANKRD56 WILD-TYPE" 
       TCGA-67-6216        TCGA-67-6217        TCGA-71-6725        TCGA-73-4658 
"ANKRD56 WILD-TYPE" "ANKRD56 WILD-TYPE" "ANKRD56 WILD-TYPE" "ANKRD56 WILD-TYPE" 
       TCGA-73-4659        TCGA-73-4662        TCGA-73-4666        TCGA-73-4668 
"ANKRD56 WILD-TYPE" "ANKRD56 WILD-TYPE" "ANKRD56 WILD-TYPE" "ANKRD56 WILD-TYPE" 
       TCGA-73-4670        TCGA-73-4675        TCGA-73-4676        TCGA-73-4677 
"ANKRD56 WILD-TYPE" "ANKRD56 WILD-TYPE" "ANKRD56 WILD-TYPE" "ANKRD56 WILD-TYPE" 
       TCGA-91-6828        TCGA-91-6829        TCGA-91-6831        TCGA-91-6835 
"ANKRD56 WILD-TYPE" "ANKRD56 WILD-TYPE" "ANKRD56 WILD-TYPE" "ANKRD56 WILD-TYPE" 
       TCGA-91-6836 
"ANKRD56 WILD-TYPE" 
[1] "hr=" "2"  
D281V2, continuous
D281V3, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  ANKRD56 MUTATED      5    6
  ANKRD56 WILD-TYPE   88   73
        clus
vv       ANKRD56 MUTATED ANKRD56 WILD-TYPE
  FEMALE               5                88
  MALE                 6                73
D281V4, continuous
D281V5, multiclass
D281V6, multiclass
    clus
vv   ANKRD56 MUTATED ANKRD56 WILD-TYPE
  T1               1                40
  T2               7               101
  T3               1                13
  T4               2                 6
D281V7, multiclass
       clus
vv      ANKRD56 MUTATED ANKRD56 WILD-TYPE
  N0                  5                90
  N1                  2                35
  N2+N3               4                31
D281V8, multiclass
    clus
vv   ANKRD56 MUTATED ANKRD56 WILD-TYPE
  M0              10               127
  M1               0                 9
  MX               1                21
D281V9, multiclass
     clus
vv    ANKRD56 MUTATED ANKRD56 WILD-TYPE
  I                 5                83
  II                1                32
  III               5                34
  IV                0                 9
D281V10, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  ANKRD56 MUTATED      0   11
  ANKRD56 WILD-TYPE   16  145
     clus
vv    ANKRD56 MUTATED ANKRD56 WILD-TYPE
  NO                0                16
  YES              11               145
D281V11, continuous
D281V12, continuous
D281V13, multiclass
                                             clus
vv                                            ANKRD56 MUTATED ANKRD56 WILD-TYPE
  CURRENT REFORMED SMOKER FOR < OR = 15 YEARS               7                55
  CURRENT REFORMED SMOKER FOR > 15 YEARS                    2                44
  CURRENT SMOKER                                            2                26
  LIFELONG NON-SMOKER                                       0                24
D281V14, continuous

Clustering(282) Variable = CYP2C19 MUTATION ANALYSIS
D282V1, survival
                   sevent
clus2                0  1
  CYP2C19 MUTATED    4  3
  CYP2C19 WILD-TYPE 95 47
  CYP2C19 MUTATED CYP2C19 WILD-TYPE 
                7               142 
  CYP2C19 MUTATED CYP2C19 WILD-TYPE 
                3                47 
$`CYP2C19 MUTATED`
TCGA-05-4396 TCGA-05-4430 TCGA-35-4122 TCGA-49-4487 TCGA-49-6743 TCGA-64-5781 
        9.96        25.02         7.36        28.11        12.13        39.52 
TCGA-91-6829 
       41.33 

$`CYP2C19 WILD-TYPE`
TCGA-05-4249 TCGA-05-4250 TCGA-05-4382 TCGA-05-4384 TCGA-05-4390 TCGA-05-4397 
       38.07         3.98        19.92        14.01        37.02        24.03 
TCGA-05-4398 TCGA-05-4402 TCGA-05-4405 TCGA-05-4415 TCGA-05-4417 TCGA-05-4418 
       47.05         8.02        20.05         2.96        14.93         8.98 
TCGA-05-4420 TCGA-05-4424 TCGA-05-4426 TCGA-05-4427 TCGA-05-4432 TCGA-05-4433 
       29.95        30.02        26.01        26.01        25.02        24.00 
TCGA-05-4434 TCGA-05-5420 TCGA-05-5423 TCGA-05-5425 TCGA-05-5429 TCGA-05-5715 
       15.02         1.02         4.96         2.96         0.99         2.04 
TCGA-35-3615 TCGA-35-4123 TCGA-35-5375 TCGA-38-4625 TCGA-38-4626 TCGA-38-4627 
        0.46         5.95         8.68        47.61        85.32        37.71 
TCGA-38-4628 TCGA-38-4629 TCGA-38-4630 TCGA-38-4631 TCGA-38-4632 TCGA-38-6178 
       49.02        28.37        35.28        11.64        44.61         5.19 
TCGA-44-2655 TCGA-44-2656 TCGA-44-2657 TCGA-44-2659 TCGA-44-2661 TCGA-44-2662 
       18.87        19.10        13.15        17.39         3.39        15.78 
TCGA-44-2665 TCGA-44-2666 TCGA-44-2668 TCGA-44-3396 TCGA-44-3398 TCGA-44-3918 
       13.15         3.19         8.09        10.22         8.32         6.44 
TCGA-44-3919 TCGA-44-4112 TCGA-44-5643 TCGA-44-5645 TCGA-44-6144 TCGA-44-6145 
        6.21         4.60         3.48         6.84         0.30         3.35 
TCGA-44-6146 TCGA-44-6147 TCGA-44-6148 TCGA-44-6774 TCGA-44-6775 TCGA-44-6776 
        9.93         7.76         3.12         5.42         2.70        63.72 
TCGA-44-6777 TCGA-44-6778 TCGA-44-6779 TCGA-49-4486 TCGA-49-4488 TCGA-49-4490 
       32.45        36.49        16.41        76.21        28.57        12.66 
TCGA-49-4494 TCGA-49-4501 TCGA-49-4505 TCGA-49-4506 TCGA-49-4507 TCGA-49-4510 
       35.54        46.72        14.07        32.84         8.81        29.46 
TCGA-49-4512 TCGA-49-4514 TCGA-49-6742 TCGA-49-6744 TCGA-49-6745 TCGA-50-5044 
       29.75        43.20        15.02        12.99         4.93        20.48 
TCGA-50-5045 TCGA-50-5049 TCGA-50-5051 TCGA-50-5055 TCGA-50-5066 TCGA-50-5068 
       71.47        48.82        14.96        25.81         9.76        49.28 
TCGA-50-5072 TCGA-50-5930 TCGA-50-5931 TCGA-50-5932 TCGA-50-5933 TCGA-50-5935 
        8.05         9.27         8.78        35.87        77.88        21.47 
TCGA-50-5936 TCGA-50-5939 TCGA-50-5941 TCGA-50-5942 TCGA-50-5944 TCGA-50-5946 
        8.45        15.12         9.37         4.44        12.26        11.47 
TCGA-50-6590 TCGA-50-6591 TCGA-50-6592 TCGA-50-6593 TCGA-50-6594 TCGA-50-6595 
       42.31         3.88        25.51        11.05        12.16         6.21 
TCGA-50-6597 TCGA-55-1592 TCGA-55-1594 TCGA-55-1595 TCGA-55-1596 TCGA-55-5899 
       33.37        23.05        38.73        48.62        45.17         2.86 
TCGA-55-6543 TCGA-55-6642 TCGA-55-6712 TCGA-64-1676 TCGA-64-1677 TCGA-64-1678 
        0.07        32.61         0.79        56.81        20.65        39.09 
TCGA-64-1680 TCGA-64-5774 TCGA-64-5775 TCGA-64-5778 TCGA-64-5779 TCGA-64-5815 
       37.02        83.84         0.10        30.44        16.67         7.33 
TCGA-67-3770 TCGA-67-3771 TCGA-67-3772 TCGA-67-3773 TCGA-67-3774 TCGA-67-6215 
        0.99         1.97         0.59         2.04         0.59         0.89 
TCGA-67-6216 TCGA-67-6217 TCGA-71-6725 TCGA-73-4658 TCGA-73-4659 TCGA-73-4662 
        0.69        13.87         2.01        52.57        23.38        29.95 
TCGA-73-4666 TCGA-73-4668 TCGA-73-4670 TCGA-73-4675 TCGA-73-4676 TCGA-73-4677 
       20.28        15.35         0.46         1.32         4.01         1.25 
TCGA-91-6828 TCGA-91-6831 TCGA-91-6835 TCGA-91-6836 
        1.22         1.28         1.15         0.36 

  CYP2C19 MUTATED CYP2C19 WILD-TYPE 
             7.36              0.07 
  CYP2C19 MUTATED CYP2C19 WILD-TYPE 
            41.33             85.32 
  CYP2C19 MUTATED CYP2C19 WILD-TYPE 
            25.02             13.51 
[1] "7.4 - 41.3 (25.0)" "0.1 - 85.3 (13.5)"
       TCGA-05-4249        TCGA-05-4250        TCGA-05-4382        TCGA-05-4384 
"CYP2C19 WILD-TYPE" "CYP2C19 WILD-TYPE" "CYP2C19 WILD-TYPE" "CYP2C19 WILD-TYPE" 
       TCGA-05-4390        TCGA-05-4396        TCGA-05-4397        TCGA-05-4398 
"CYP2C19 WILD-TYPE"   "CYP2C19 MUTATED" "CYP2C19 WILD-TYPE" "CYP2C19 WILD-TYPE" 
       TCGA-05-4402        TCGA-05-4405        TCGA-05-4415        TCGA-05-4417 
"CYP2C19 WILD-TYPE" "CYP2C19 WILD-TYPE" "CYP2C19 WILD-TYPE" "CYP2C19 WILD-TYPE" 
       TCGA-05-4418        TCGA-05-4420        TCGA-05-4424        TCGA-05-4426 
"CYP2C19 WILD-TYPE" "CYP2C19 WILD-TYPE" "CYP2C19 WILD-TYPE" "CYP2C19 WILD-TYPE" 
       TCGA-05-4427        TCGA-05-4430        TCGA-05-4432        TCGA-05-4433 
"CYP2C19 WILD-TYPE"   "CYP2C19 MUTATED" "CYP2C19 WILD-TYPE" "CYP2C19 WILD-TYPE" 
       TCGA-05-4434        TCGA-05-5420        TCGA-05-5423        TCGA-05-5425 
"CYP2C19 WILD-TYPE" "CYP2C19 WILD-TYPE" "CYP2C19 WILD-TYPE" "CYP2C19 WILD-TYPE" 
       TCGA-05-5429        TCGA-05-5715        TCGA-35-3615        TCGA-35-4122 
"CYP2C19 WILD-TYPE" "CYP2C19 WILD-TYPE" "CYP2C19 WILD-TYPE"   "CYP2C19 MUTATED" 
       TCGA-35-4123        TCGA-35-5375        TCGA-38-4625        TCGA-38-4626 
"CYP2C19 WILD-TYPE" "CYP2C19 WILD-TYPE" "CYP2C19 WILD-TYPE" "CYP2C19 WILD-TYPE" 
       TCGA-38-4627        TCGA-38-4628        TCGA-38-4629        TCGA-38-4630 
"CYP2C19 WILD-TYPE" "CYP2C19 WILD-TYPE" "CYP2C19 WILD-TYPE" "CYP2C19 WILD-TYPE" 
       TCGA-38-4631        TCGA-38-4632        TCGA-38-6178        TCGA-44-2655 
"CYP2C19 WILD-TYPE" "CYP2C19 WILD-TYPE" "CYP2C19 WILD-TYPE" "CYP2C19 WILD-TYPE" 
       TCGA-44-2656        TCGA-44-2657        TCGA-44-2659        TCGA-44-2661 
"CYP2C19 WILD-TYPE" "CYP2C19 WILD-TYPE" "CYP2C19 WILD-TYPE" "CYP2C19 WILD-TYPE" 
       TCGA-44-2662        TCGA-44-2665        TCGA-44-2666        TCGA-44-2668 
"CYP2C19 WILD-TYPE" "CYP2C19 WILD-TYPE" "CYP2C19 WILD-TYPE" "CYP2C19 WILD-TYPE" 
       TCGA-44-3396        TCGA-44-3398        TCGA-44-3918        TCGA-44-3919 
"CYP2C19 WILD-TYPE" "CYP2C19 WILD-TYPE" "CYP2C19 WILD-TYPE" "CYP2C19 WILD-TYPE" 
       TCGA-44-4112        TCGA-44-5643        TCGA-44-5645        TCGA-44-6144 
"CYP2C19 WILD-TYPE" "CYP2C19 WILD-TYPE" "CYP2C19 WILD-TYPE" "CYP2C19 WILD-TYPE" 
       TCGA-44-6145        TCGA-44-6146        TCGA-44-6147        TCGA-44-6148 
"CYP2C19 WILD-TYPE" "CYP2C19 WILD-TYPE" "CYP2C19 WILD-TYPE" "CYP2C19 WILD-TYPE" 
       TCGA-44-6774        TCGA-44-6775        TCGA-44-6776        TCGA-44-6777 
"CYP2C19 WILD-TYPE" "CYP2C19 WILD-TYPE" "CYP2C19 WILD-TYPE" "CYP2C19 WILD-TYPE" 
       TCGA-44-6778        TCGA-44-6779        TCGA-49-4486        TCGA-49-4487 
"CYP2C19 WILD-TYPE" "CYP2C19 WILD-TYPE" "CYP2C19 WILD-TYPE"   "CYP2C19 MUTATED" 
       TCGA-49-4488        TCGA-49-4490        TCGA-49-4494        TCGA-49-4501 
"CYP2C19 WILD-TYPE" "CYP2C19 WILD-TYPE" "CYP2C19 WILD-TYPE" "CYP2C19 WILD-TYPE" 
       TCGA-49-4505        TCGA-49-4506        TCGA-49-4507        TCGA-49-4510 
"CYP2C19 WILD-TYPE" "CYP2C19 WILD-TYPE" "CYP2C19 WILD-TYPE" "CYP2C19 WILD-TYPE" 
       TCGA-49-4512        TCGA-49-4514        TCGA-49-6742        TCGA-49-6743 
"CYP2C19 WILD-TYPE" "CYP2C19 WILD-TYPE" "CYP2C19 WILD-TYPE"   "CYP2C19 MUTATED" 
       TCGA-49-6744        TCGA-49-6745        TCGA-50-5044        TCGA-50-5045 
"CYP2C19 WILD-TYPE" "CYP2C19 WILD-TYPE" "CYP2C19 WILD-TYPE" "CYP2C19 WILD-TYPE" 
       TCGA-50-5049        TCGA-50-5051        TCGA-50-5055        TCGA-50-5066 
"CYP2C19 WILD-TYPE" "CYP2C19 WILD-TYPE" "CYP2C19 WILD-TYPE" "CYP2C19 WILD-TYPE" 
       TCGA-50-5068        TCGA-50-5072        TCGA-50-5930        TCGA-50-5931 
"CYP2C19 WILD-TYPE" "CYP2C19 WILD-TYPE" "CYP2C19 WILD-TYPE" "CYP2C19 WILD-TYPE" 
       TCGA-50-5932        TCGA-50-5933        TCGA-50-5935        TCGA-50-5936 
"CYP2C19 WILD-TYPE" "CYP2C19 WILD-TYPE" "CYP2C19 WILD-TYPE" "CYP2C19 WILD-TYPE" 
       TCGA-50-5939        TCGA-50-5941        TCGA-50-5942        TCGA-50-5944 
"CYP2C19 WILD-TYPE" "CYP2C19 WILD-TYPE" "CYP2C19 WILD-TYPE" "CYP2C19 WILD-TYPE" 
       TCGA-50-5946        TCGA-50-6590        TCGA-50-6591        TCGA-50-6592 
"CYP2C19 WILD-TYPE" "CYP2C19 WILD-TYPE" "CYP2C19 WILD-TYPE" "CYP2C19 WILD-TYPE" 
       TCGA-50-6593        TCGA-50-6594        TCGA-50-6595        TCGA-50-6597 
"CYP2C19 WILD-TYPE" "CYP2C19 WILD-TYPE" "CYP2C19 WILD-TYPE" "CYP2C19 WILD-TYPE" 
       TCGA-55-1592        TCGA-55-1594        TCGA-55-1595        TCGA-55-1596 
"CYP2C19 WILD-TYPE" "CYP2C19 WILD-TYPE" "CYP2C19 WILD-TYPE" "CYP2C19 WILD-TYPE" 
       TCGA-55-5899        TCGA-55-6543        TCGA-55-6642        TCGA-55-6712 
"CYP2C19 WILD-TYPE" "CYP2C19 WILD-TYPE" "CYP2C19 WILD-TYPE" "CYP2C19 WILD-TYPE" 
       TCGA-64-1676        TCGA-64-1677        TCGA-64-1678        TCGA-64-1680 
"CYP2C19 WILD-TYPE" "CYP2C19 WILD-TYPE" "CYP2C19 WILD-TYPE" "CYP2C19 WILD-TYPE" 
       TCGA-64-5774        TCGA-64-5775        TCGA-64-5778        TCGA-64-5779 
"CYP2C19 WILD-TYPE" "CYP2C19 WILD-TYPE" "CYP2C19 WILD-TYPE" "CYP2C19 WILD-TYPE" 
       TCGA-64-5781        TCGA-64-5815        TCGA-67-3770        TCGA-67-3771 
  "CYP2C19 MUTATED" "CYP2C19 WILD-TYPE" "CYP2C19 WILD-TYPE" "CYP2C19 WILD-TYPE" 
       TCGA-67-3772        TCGA-67-3773        TCGA-67-3774        TCGA-67-6215 
"CYP2C19 WILD-TYPE" "CYP2C19 WILD-TYPE" "CYP2C19 WILD-TYPE" "CYP2C19 WILD-TYPE" 
       TCGA-67-6216        TCGA-67-6217        TCGA-71-6725        TCGA-73-4658 
"CYP2C19 WILD-TYPE" "CYP2C19 WILD-TYPE" "CYP2C19 WILD-TYPE" "CYP2C19 WILD-TYPE" 
       TCGA-73-4659        TCGA-73-4662        TCGA-73-4666        TCGA-73-4668 
"CYP2C19 WILD-TYPE" "CYP2C19 WILD-TYPE" "CYP2C19 WILD-TYPE" "CYP2C19 WILD-TYPE" 
       TCGA-73-4670        TCGA-73-4675        TCGA-73-4676        TCGA-73-4677 
"CYP2C19 WILD-TYPE" "CYP2C19 WILD-TYPE" "CYP2C19 WILD-TYPE" "CYP2C19 WILD-TYPE" 
       TCGA-91-6828        TCGA-91-6829        TCGA-91-6831        TCGA-91-6835 
"CYP2C19 WILD-TYPE"   "CYP2C19 MUTATED" "CYP2C19 WILD-TYPE" "CYP2C19 WILD-TYPE" 
       TCGA-91-6836 
"CYP2C19 WILD-TYPE" 
       TCGA-05-4249        TCGA-05-4250        TCGA-05-4382        TCGA-05-4384 
"CYP2C19 WILD-TYPE" "CYP2C19 WILD-TYPE" "CYP2C19 WILD-TYPE" "CYP2C19 WILD-TYPE" 
       TCGA-05-4390        TCGA-05-4396        TCGA-05-4397        TCGA-05-4398 
"CYP2C19 WILD-TYPE"   "CYP2C19 MUTATED" "CYP2C19 WILD-TYPE" "CYP2C19 WILD-TYPE" 
       TCGA-05-4402        TCGA-05-4405        TCGA-05-4415        TCGA-05-4417 
"CYP2C19 WILD-TYPE" "CYP2C19 WILD-TYPE" "CYP2C19 WILD-TYPE" "CYP2C19 WILD-TYPE" 
       TCGA-05-4418        TCGA-05-4420        TCGA-05-4424        TCGA-05-4426 
"CYP2C19 WILD-TYPE" "CYP2C19 WILD-TYPE" "CYP2C19 WILD-TYPE" "CYP2C19 WILD-TYPE" 
       TCGA-05-4427        TCGA-05-4430        TCGA-05-4432        TCGA-05-4433 
"CYP2C19 WILD-TYPE"   "CYP2C19 MUTATED" "CYP2C19 WILD-TYPE" "CYP2C19 WILD-TYPE" 
       TCGA-05-4434        TCGA-05-5420        TCGA-05-5423        TCGA-05-5425 
"CYP2C19 WILD-TYPE" "CYP2C19 WILD-TYPE" "CYP2C19 WILD-TYPE" "CYP2C19 WILD-TYPE" 
       TCGA-05-5429        TCGA-05-5715        TCGA-35-3615        TCGA-35-4122 
"CYP2C19 WILD-TYPE" "CYP2C19 WILD-TYPE" "CYP2C19 WILD-TYPE"   "CYP2C19 MUTATED" 
       TCGA-35-4123        TCGA-35-5375        TCGA-38-4625        TCGA-38-4626 
"CYP2C19 WILD-TYPE" "CYP2C19 WILD-TYPE" "CYP2C19 WILD-TYPE" "CYP2C19 WILD-TYPE" 
       TCGA-38-4627        TCGA-38-4628        TCGA-38-4629        TCGA-38-4630 
"CYP2C19 WILD-TYPE" "CYP2C19 WILD-TYPE" "CYP2C19 WILD-TYPE" "CYP2C19 WILD-TYPE" 
       TCGA-38-4631        TCGA-38-4632        TCGA-38-6178        TCGA-44-2655 
"CYP2C19 WILD-TYPE" "CYP2C19 WILD-TYPE" "CYP2C19 WILD-TYPE" "CYP2C19 WILD-TYPE" 
       TCGA-44-2656        TCGA-44-2657        TCGA-44-2659        TCGA-44-2661 
"CYP2C19 WILD-TYPE" "CYP2C19 WILD-TYPE" "CYP2C19 WILD-TYPE" "CYP2C19 WILD-TYPE" 
       TCGA-44-2662        TCGA-44-2665        TCGA-44-2666        TCGA-44-2668 
"CYP2C19 WILD-TYPE" "CYP2C19 WILD-TYPE" "CYP2C19 WILD-TYPE" "CYP2C19 WILD-TYPE" 
       TCGA-44-3396        TCGA-44-3398        TCGA-44-3918        TCGA-44-3919 
"CYP2C19 WILD-TYPE" "CYP2C19 WILD-TYPE" "CYP2C19 WILD-TYPE" "CYP2C19 WILD-TYPE" 
       TCGA-44-4112        TCGA-44-5643        TCGA-44-5645        TCGA-44-6144 
"CYP2C19 WILD-TYPE" "CYP2C19 WILD-TYPE" "CYP2C19 WILD-TYPE" "CYP2C19 WILD-TYPE" 
       TCGA-44-6145        TCGA-44-6146        TCGA-44-6147        TCGA-44-6148 
"CYP2C19 WILD-TYPE" "CYP2C19 WILD-TYPE" "CYP2C19 WILD-TYPE" "CYP2C19 WILD-TYPE" 
       TCGA-44-6774        TCGA-44-6775        TCGA-44-6776        TCGA-44-6777 
"CYP2C19 WILD-TYPE" "CYP2C19 WILD-TYPE" "CYP2C19 WILD-TYPE" "CYP2C19 WILD-TYPE" 
       TCGA-44-6778        TCGA-44-6779        TCGA-49-4486        TCGA-49-4487 
"CYP2C19 WILD-TYPE" "CYP2C19 WILD-TYPE" "CYP2C19 WILD-TYPE"   "CYP2C19 MUTATED" 
       TCGA-49-4488        TCGA-49-4490        TCGA-49-4494        TCGA-49-4501 
"CYP2C19 WILD-TYPE" "CYP2C19 WILD-TYPE" "CYP2C19 WILD-TYPE" "CYP2C19 WILD-TYPE" 
       TCGA-49-4505        TCGA-49-4506        TCGA-49-4507        TCGA-49-4510 
"CYP2C19 WILD-TYPE" "CYP2C19 WILD-TYPE" "CYP2C19 WILD-TYPE" "CYP2C19 WILD-TYPE" 
       TCGA-49-4512        TCGA-49-4514        TCGA-49-6742        TCGA-49-6743 
"CYP2C19 WILD-TYPE" "CYP2C19 WILD-TYPE" "CYP2C19 WILD-TYPE"   "CYP2C19 MUTATED" 
       TCGA-49-6744        TCGA-49-6745        TCGA-50-5044        TCGA-50-5045 
"CYP2C19 WILD-TYPE" "CYP2C19 WILD-TYPE" "CYP2C19 WILD-TYPE" "CYP2C19 WILD-TYPE" 
       TCGA-50-5049        TCGA-50-5051        TCGA-50-5055        TCGA-50-5066 
"CYP2C19 WILD-TYPE" "CYP2C19 WILD-TYPE" "CYP2C19 WILD-TYPE" "CYP2C19 WILD-TYPE" 
       TCGA-50-5068        TCGA-50-5072        TCGA-50-5930        TCGA-50-5931 
"CYP2C19 WILD-TYPE" "CYP2C19 WILD-TYPE" "CYP2C19 WILD-TYPE" "CYP2C19 WILD-TYPE" 
       TCGA-50-5932        TCGA-50-5933        TCGA-50-5935        TCGA-50-5936 
"CYP2C19 WILD-TYPE" "CYP2C19 WILD-TYPE" "CYP2C19 WILD-TYPE" "CYP2C19 WILD-TYPE" 
       TCGA-50-5939        TCGA-50-5941        TCGA-50-5942        TCGA-50-5944 
"CYP2C19 WILD-TYPE" "CYP2C19 WILD-TYPE" "CYP2C19 WILD-TYPE" "CYP2C19 WILD-TYPE" 
       TCGA-50-5946        TCGA-50-6590        TCGA-50-6591        TCGA-50-6592 
"CYP2C19 WILD-TYPE" "CYP2C19 WILD-TYPE" "CYP2C19 WILD-TYPE" "CYP2C19 WILD-TYPE" 
       TCGA-50-6593        TCGA-50-6594        TCGA-50-6595        TCGA-50-6597 
"CYP2C19 WILD-TYPE" "CYP2C19 WILD-TYPE" "CYP2C19 WILD-TYPE" "CYP2C19 WILD-TYPE" 
       TCGA-55-1592        TCGA-55-1594        TCGA-55-1595        TCGA-55-1596 
"CYP2C19 WILD-TYPE" "CYP2C19 WILD-TYPE" "CYP2C19 WILD-TYPE" "CYP2C19 WILD-TYPE" 
       TCGA-55-5899        TCGA-55-6543        TCGA-55-6642        TCGA-55-6712 
"CYP2C19 WILD-TYPE" "CYP2C19 WILD-TYPE" "CYP2C19 WILD-TYPE" "CYP2C19 WILD-TYPE" 
       TCGA-64-1676        TCGA-64-1677        TCGA-64-1678        TCGA-64-1680 
"CYP2C19 WILD-TYPE" "CYP2C19 WILD-TYPE" "CYP2C19 WILD-TYPE" "CYP2C19 WILD-TYPE" 
       TCGA-64-5774        TCGA-64-5775        TCGA-64-5778        TCGA-64-5779 
"CYP2C19 WILD-TYPE" "CYP2C19 WILD-TYPE" "CYP2C19 WILD-TYPE" "CYP2C19 WILD-TYPE" 
       TCGA-64-5781        TCGA-64-5815        TCGA-67-3770        TCGA-67-3771 
  "CYP2C19 MUTATED" "CYP2C19 WILD-TYPE" "CYP2C19 WILD-TYPE" "CYP2C19 WILD-TYPE" 
       TCGA-67-3772        TCGA-67-3773        TCGA-67-3774        TCGA-67-6215 
"CYP2C19 WILD-TYPE" "CYP2C19 WILD-TYPE" "CYP2C19 WILD-TYPE" "CYP2C19 WILD-TYPE" 
       TCGA-67-6216        TCGA-67-6217        TCGA-71-6725        TCGA-73-4658 
"CYP2C19 WILD-TYPE" "CYP2C19 WILD-TYPE" "CYP2C19 WILD-TYPE" "CYP2C19 WILD-TYPE" 
       TCGA-73-4659        TCGA-73-4662        TCGA-73-4666        TCGA-73-4668 
"CYP2C19 WILD-TYPE" "CYP2C19 WILD-TYPE" "CYP2C19 WILD-TYPE" "CYP2C19 WILD-TYPE" 
       TCGA-73-4670        TCGA-73-4675        TCGA-73-4676        TCGA-73-4677 
"CYP2C19 WILD-TYPE" "CYP2C19 WILD-TYPE" "CYP2C19 WILD-TYPE" "CYP2C19 WILD-TYPE" 
       TCGA-91-6828        TCGA-91-6829        TCGA-91-6831        TCGA-91-6835 
"CYP2C19 WILD-TYPE"   "CYP2C19 MUTATED" "CYP2C19 WILD-TYPE" "CYP2C19 WILD-TYPE" 
       TCGA-91-6836 
"CYP2C19 WILD-TYPE" 
       TCGA-05-4249        TCGA-05-4250        TCGA-05-4382        TCGA-05-4384 
"CYP2C19 WILD-TYPE" "CYP2C19 WILD-TYPE" "CYP2C19 WILD-TYPE" "CYP2C19 WILD-TYPE" 
       TCGA-05-4390        TCGA-05-4396        TCGA-05-4397        TCGA-05-4398 
"CYP2C19 WILD-TYPE"   "CYP2C19 MUTATED" "CYP2C19 WILD-TYPE" "CYP2C19 WILD-TYPE" 
       TCGA-05-4402        TCGA-05-4405        TCGA-05-4415        TCGA-05-4417 
"CYP2C19 WILD-TYPE" "CYP2C19 WILD-TYPE" "CYP2C19 WILD-TYPE" "CYP2C19 WILD-TYPE" 
       TCGA-05-4418        TCGA-05-4420        TCGA-05-4424        TCGA-05-4426 
"CYP2C19 WILD-TYPE" "CYP2C19 WILD-TYPE" "CYP2C19 WILD-TYPE" "CYP2C19 WILD-TYPE" 
       TCGA-05-4427        TCGA-05-4430        TCGA-05-4432        TCGA-05-4433 
"CYP2C19 WILD-TYPE"   "CYP2C19 MUTATED" "CYP2C19 WILD-TYPE" "CYP2C19 WILD-TYPE" 
       TCGA-05-4434        TCGA-05-5420        TCGA-05-5423        TCGA-05-5425 
"CYP2C19 WILD-TYPE" "CYP2C19 WILD-TYPE" "CYP2C19 WILD-TYPE" "CYP2C19 WILD-TYPE" 
       TCGA-05-5429        TCGA-05-5715        TCGA-35-3615        TCGA-35-4122 
"CYP2C19 WILD-TYPE" "CYP2C19 WILD-TYPE" "CYP2C19 WILD-TYPE"   "CYP2C19 MUTATED" 
       TCGA-35-4123        TCGA-35-5375        TCGA-38-4625        TCGA-38-4626 
"CYP2C19 WILD-TYPE" "CYP2C19 WILD-TYPE" "CYP2C19 WILD-TYPE" "CYP2C19 WILD-TYPE" 
       TCGA-38-4627        TCGA-38-4628        TCGA-38-4629        TCGA-38-4630 
"CYP2C19 WILD-TYPE" "CYP2C19 WILD-TYPE" "CYP2C19 WILD-TYPE" "CYP2C19 WILD-TYPE" 
       TCGA-38-4631        TCGA-38-4632        TCGA-38-6178        TCGA-44-2655 
"CYP2C19 WILD-TYPE" "CYP2C19 WILD-TYPE" "CYP2C19 WILD-TYPE" "CYP2C19 WILD-TYPE" 
       TCGA-44-2656        TCGA-44-2657        TCGA-44-2659        TCGA-44-2661 
"CYP2C19 WILD-TYPE" "CYP2C19 WILD-TYPE" "CYP2C19 WILD-TYPE" "CYP2C19 WILD-TYPE" 
       TCGA-44-2662        TCGA-44-2665        TCGA-44-2666        TCGA-44-2668 
"CYP2C19 WILD-TYPE" "CYP2C19 WILD-TYPE" "CYP2C19 WILD-TYPE" "CYP2C19 WILD-TYPE" 
       TCGA-44-3396        TCGA-44-3398        TCGA-44-3918        TCGA-44-3919 
"CYP2C19 WILD-TYPE" "CYP2C19 WILD-TYPE" "CYP2C19 WILD-TYPE" "CYP2C19 WILD-TYPE" 
       TCGA-44-4112        TCGA-44-5643        TCGA-44-5645        TCGA-44-6144 
"CYP2C19 WILD-TYPE" "CYP2C19 WILD-TYPE" "CYP2C19 WILD-TYPE" "CYP2C19 WILD-TYPE" 
       TCGA-44-6145        TCGA-44-6146        TCGA-44-6147        TCGA-44-6148 
"CYP2C19 WILD-TYPE" "CYP2C19 WILD-TYPE" "CYP2C19 WILD-TYPE" "CYP2C19 WILD-TYPE" 
       TCGA-44-6774        TCGA-44-6775        TCGA-44-6776        TCGA-44-6777 
"CYP2C19 WILD-TYPE" "CYP2C19 WILD-TYPE" "CYP2C19 WILD-TYPE" "CYP2C19 WILD-TYPE" 
       TCGA-44-6778        TCGA-44-6779        TCGA-49-4486        TCGA-49-4487 
"CYP2C19 WILD-TYPE" "CYP2C19 WILD-TYPE" "CYP2C19 WILD-TYPE"   "CYP2C19 MUTATED" 
       TCGA-49-4488        TCGA-49-4490        TCGA-49-4494        TCGA-49-4501 
"CYP2C19 WILD-TYPE" "CYP2C19 WILD-TYPE" "CYP2C19 WILD-TYPE" "CYP2C19 WILD-TYPE" 
       TCGA-49-4505        TCGA-49-4506        TCGA-49-4507        TCGA-49-4510 
"CYP2C19 WILD-TYPE" "CYP2C19 WILD-TYPE" "CYP2C19 WILD-TYPE" "CYP2C19 WILD-TYPE" 
       TCGA-49-4512        TCGA-49-4514        TCGA-49-6742        TCGA-49-6743 
"CYP2C19 WILD-TYPE" "CYP2C19 WILD-TYPE" "CYP2C19 WILD-TYPE"   "CYP2C19 MUTATED" 
       TCGA-49-6744        TCGA-49-6745        TCGA-50-5044        TCGA-50-5045 
"CYP2C19 WILD-TYPE" "CYP2C19 WILD-TYPE" "CYP2C19 WILD-TYPE" "CYP2C19 WILD-TYPE" 
       TCGA-50-5049        TCGA-50-5051        TCGA-50-5055        TCGA-50-5066 
"CYP2C19 WILD-TYPE" "CYP2C19 WILD-TYPE" "CYP2C19 WILD-TYPE" "CYP2C19 WILD-TYPE" 
       TCGA-50-5068        TCGA-50-5072        TCGA-50-5930        TCGA-50-5931 
"CYP2C19 WILD-TYPE" "CYP2C19 WILD-TYPE" "CYP2C19 WILD-TYPE" "CYP2C19 WILD-TYPE" 
       TCGA-50-5932        TCGA-50-5933        TCGA-50-5935        TCGA-50-5936 
"CYP2C19 WILD-TYPE" "CYP2C19 WILD-TYPE" "CYP2C19 WILD-TYPE" "CYP2C19 WILD-TYPE" 
       TCGA-50-5939        TCGA-50-5941        TCGA-50-5942        TCGA-50-5944 
"CYP2C19 WILD-TYPE" "CYP2C19 WILD-TYPE" "CYP2C19 WILD-TYPE" "CYP2C19 WILD-TYPE" 
       TCGA-50-5946        TCGA-50-6590        TCGA-50-6591        TCGA-50-6592 
"CYP2C19 WILD-TYPE" "CYP2C19 WILD-TYPE" "CYP2C19 WILD-TYPE" "CYP2C19 WILD-TYPE" 
       TCGA-50-6593        TCGA-50-6594        TCGA-50-6595        TCGA-50-6597 
"CYP2C19 WILD-TYPE" "CYP2C19 WILD-TYPE" "CYP2C19 WILD-TYPE" "CYP2C19 WILD-TYPE" 
       TCGA-55-1592        TCGA-55-1594        TCGA-55-1595        TCGA-55-1596 
"CYP2C19 WILD-TYPE" "CYP2C19 WILD-TYPE" "CYP2C19 WILD-TYPE" "CYP2C19 WILD-TYPE" 
       TCGA-55-5899        TCGA-55-6543        TCGA-55-6642        TCGA-55-6712 
"CYP2C19 WILD-TYPE" "CYP2C19 WILD-TYPE" "CYP2C19 WILD-TYPE" "CYP2C19 WILD-TYPE" 
       TCGA-64-1676        TCGA-64-1677        TCGA-64-1678        TCGA-64-1680 
"CYP2C19 WILD-TYPE" "CYP2C19 WILD-TYPE" "CYP2C19 WILD-TYPE" "CYP2C19 WILD-TYPE" 
       TCGA-64-5774        TCGA-64-5775        TCGA-64-5778        TCGA-64-5779 
"CYP2C19 WILD-TYPE" "CYP2C19 WILD-TYPE" "CYP2C19 WILD-TYPE" "CYP2C19 WILD-TYPE" 
       TCGA-64-5781        TCGA-64-5815        TCGA-67-3770        TCGA-67-3771 
  "CYP2C19 MUTATED" "CYP2C19 WILD-TYPE" "CYP2C19 WILD-TYPE" "CYP2C19 WILD-TYPE" 
       TCGA-67-3772        TCGA-67-3773        TCGA-67-3774        TCGA-67-6215 
"CYP2C19 WILD-TYPE" "CYP2C19 WILD-TYPE" "CYP2C19 WILD-TYPE" "CYP2C19 WILD-TYPE" 
       TCGA-67-6216        TCGA-67-6217        TCGA-71-6725        TCGA-73-4658 
"CYP2C19 WILD-TYPE" "CYP2C19 WILD-TYPE" "CYP2C19 WILD-TYPE" "CYP2C19 WILD-TYPE" 
       TCGA-73-4659        TCGA-73-4662        TCGA-73-4666        TCGA-73-4668 
"CYP2C19 WILD-TYPE" "CYP2C19 WILD-TYPE" "CYP2C19 WILD-TYPE" "CYP2C19 WILD-TYPE" 
       TCGA-73-4670        TCGA-73-4675        TCGA-73-4676        TCGA-73-4677 
"CYP2C19 WILD-TYPE" "CYP2C19 WILD-TYPE" "CYP2C19 WILD-TYPE" "CYP2C19 WILD-TYPE" 
       TCGA-91-6828        TCGA-91-6829        TCGA-91-6831        TCGA-91-6835 
"CYP2C19 WILD-TYPE"   "CYP2C19 MUTATED" "CYP2C19 WILD-TYPE" "CYP2C19 WILD-TYPE" 
       TCGA-91-6836 
"CYP2C19 WILD-TYPE" 
[1] "hr=" "1.2"
D282V2, continuous
D282V3, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  CYP2C19 MUTATED      4    3
  CYP2C19 WILD-TYPE   89   76
        clus
vv       CYP2C19 MUTATED CYP2C19 WILD-TYPE
  FEMALE               4                89
  MALE                 3                76
D282V4, continuous
[1] "Remove cluster labels:" "CYP2C19 MUTATED"       
clus
  CYP2C19 MUTATED CYP2C19 WILD-TYPE 
                1                11 
       TCGA-35-4123        TCGA-35-5375        TCGA-64-1677        TCGA-64-5778 
"CYP2C19 WILD-TYPE" "CYP2C19 WILD-TYPE" "CYP2C19 WILD-TYPE" "CYP2C19 WILD-TYPE" 
       TCGA-71-6725        TCGA-73-4659        TCGA-73-4662        TCGA-73-4666 
"CYP2C19 WILD-TYPE" "CYP2C19 WILD-TYPE" "CYP2C19 WILD-TYPE" "CYP2C19 WILD-TYPE" 
       TCGA-73-4668        TCGA-73-4676        TCGA-75-5122 
"CYP2C19 WILD-TYPE" "CYP2C19 WILD-TYPE" "CYP2C19 WILD-TYPE" 
D282V5, multiclass
D282V6, multiclass
    clus
vv   CYP2C19 MUTATED CYP2C19 WILD-TYPE
  T1               3                38
  T2               3               105
  T3               0                14
  T4               1                 7
D282V7, multiclass
       clus
vv      CYP2C19 MUTATED CYP2C19 WILD-TYPE
  N0                  5                90
  N1                  1                36
  N2+N3               1                34
D282V8, multiclass
    clus
vv   CYP2C19 MUTATED CYP2C19 WILD-TYPE
  M0               5               132
  M1               0                 9
  MX               2                20
D282V9, multiclass
     clus
vv    CYP2C19 MUTATED CYP2C19 WILD-TYPE
  I                 5                83
  II                0                33
  III               2                37
  IV                0                 9
D282V10, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  CYP2C19 MUTATED      0    7
  CYP2C19 WILD-TYPE   16  149
     clus
vv    CYP2C19 MUTATED CYP2C19 WILD-TYPE
  NO                0                16
  YES               7               149
D282V11, continuous
D282V12, continuous
D282V13, multiclass
                                             clus
vv                                            CYP2C19 MUTATED CYP2C19 WILD-TYPE
  CURRENT REFORMED SMOKER FOR < OR = 15 YEARS               6                56
  CURRENT REFORMED SMOKER FOR > 15 YEARS                    1                45
  CURRENT SMOKER                                            0                28
  LIFELONG NON-SMOKER                                       0                24
D282V14, continuous

Clustering(283) Variable = KRTAP10-4 MUTATION ANALYSIS
D283V1, survival
                     sevent
clus2                  0  1
  KRTAP10-4 MUTATED    5  1
  KRTAP10-4 WILD-TYPE 94 49
  KRTAP10-4 MUTATED KRTAP10-4 WILD-TYPE 
                  6                 143 
  KRTAP10-4 MUTATED KRTAP10-4 WILD-TYPE 
                  1                  49 
$`KRTAP10-4 MUTATED`
TCGA-49-4494 TCGA-50-5072 TCGA-55-5899 TCGA-64-5781 TCGA-91-6831 TCGA-91-6836 
       35.54         8.05         2.86        39.52         1.28         0.36 

$`KRTAP10-4 WILD-TYPE`
TCGA-05-4249 TCGA-05-4250 TCGA-05-4382 TCGA-05-4384 TCGA-05-4390 TCGA-05-4396 
       38.07         3.98        19.92        14.01        37.02         9.96 
TCGA-05-4397 TCGA-05-4398 TCGA-05-4402 TCGA-05-4405 TCGA-05-4415 TCGA-05-4417 
       24.03        47.05         8.02        20.05         2.96        14.93 
TCGA-05-4418 TCGA-05-4420 TCGA-05-4424 TCGA-05-4426 TCGA-05-4427 TCGA-05-4430 
        8.98        29.95        30.02        26.01        26.01        25.02 
TCGA-05-4432 TCGA-05-4433 TCGA-05-4434 TCGA-05-5420 TCGA-05-5423 TCGA-05-5425 
       25.02        24.00        15.02         1.02         4.96         2.96 
TCGA-05-5429 TCGA-05-5715 TCGA-35-3615 TCGA-35-4122 TCGA-35-4123 TCGA-35-5375 
        0.99         2.04         0.46         7.36         5.95         8.68 
TCGA-38-4625 TCGA-38-4626 TCGA-38-4627 TCGA-38-4628 TCGA-38-4629 TCGA-38-4630 
       47.61        85.32        37.71        49.02        28.37        35.28 
TCGA-38-4631 TCGA-38-4632 TCGA-38-6178 TCGA-44-2655 TCGA-44-2656 TCGA-44-2657 
       11.64        44.61         5.19        18.87        19.10        13.15 
TCGA-44-2659 TCGA-44-2661 TCGA-44-2662 TCGA-44-2665 TCGA-44-2666 TCGA-44-2668 
       17.39         3.39        15.78        13.15         3.19         8.09 
TCGA-44-3396 TCGA-44-3398 TCGA-44-3918 TCGA-44-3919 TCGA-44-4112 TCGA-44-5643 
       10.22         8.32         6.44         6.21         4.60         3.48 
TCGA-44-5645 TCGA-44-6144 TCGA-44-6145 TCGA-44-6146 TCGA-44-6147 TCGA-44-6148 
        6.84         0.30         3.35         9.93         7.76         3.12 
TCGA-44-6774 TCGA-44-6775 TCGA-44-6776 TCGA-44-6777 TCGA-44-6778 TCGA-44-6779 
        5.42         2.70        63.72        32.45        36.49        16.41 
TCGA-49-4486 TCGA-49-4487 TCGA-49-4488 TCGA-49-4490 TCGA-49-4501 TCGA-49-4505 
       76.21        28.11        28.57        12.66        46.72        14.07 
TCGA-49-4506 TCGA-49-4507 TCGA-49-4510 TCGA-49-4512 TCGA-49-4514 TCGA-49-6742 
       32.84         8.81        29.46        29.75        43.20        15.02 
TCGA-49-6743 TCGA-49-6744 TCGA-49-6745 TCGA-50-5044 TCGA-50-5045 TCGA-50-5049 
       12.13        12.99         4.93        20.48        71.47        48.82 
TCGA-50-5051 TCGA-50-5055 TCGA-50-5066 TCGA-50-5068 TCGA-50-5930 TCGA-50-5931 
       14.96        25.81         9.76        49.28         9.27         8.78 
TCGA-50-5932 TCGA-50-5933 TCGA-50-5935 TCGA-50-5936 TCGA-50-5939 TCGA-50-5941 
       35.87        77.88        21.47         8.45        15.12         9.37 
TCGA-50-5942 TCGA-50-5944 TCGA-50-5946 TCGA-50-6590 TCGA-50-6591 TCGA-50-6592 
        4.44        12.26        11.47        42.31         3.88        25.51 
TCGA-50-6593 TCGA-50-6594 TCGA-50-6595 TCGA-50-6597 TCGA-55-1592 TCGA-55-1594 
       11.05        12.16         6.21        33.37        23.05        38.73 
TCGA-55-1595 TCGA-55-1596 TCGA-55-6543 TCGA-55-6642 TCGA-55-6712 TCGA-64-1676 
       48.62        45.17         0.07        32.61         0.79        56.81 
TCGA-64-1677 TCGA-64-1678 TCGA-64-1680 TCGA-64-5774 TCGA-64-5775 TCGA-64-5778 
       20.65        39.09        37.02        83.84         0.10        30.44 
TCGA-64-5779 TCGA-64-5815 TCGA-67-3770 TCGA-67-3771 TCGA-67-3772 TCGA-67-3773 
       16.67         7.33         0.99         1.97         0.59         2.04 
TCGA-67-3774 TCGA-67-6215 TCGA-67-6216 TCGA-67-6217 TCGA-71-6725 TCGA-73-4658 
        0.59         0.89         0.69        13.87         2.01        52.57 
TCGA-73-4659 TCGA-73-4662 TCGA-73-4666 TCGA-73-4668 TCGA-73-4670 TCGA-73-4675 
       23.38        29.95        20.28        15.35         0.46         1.32 
TCGA-73-4676 TCGA-73-4677 TCGA-91-6828 TCGA-91-6829 TCGA-91-6835 
        4.01         1.25         1.22        41.33         1.15 

  KRTAP10-4 MUTATED KRTAP10-4 WILD-TYPE 
               0.36                0.07 
  KRTAP10-4 MUTATED KRTAP10-4 WILD-TYPE 
              39.52               85.32 
  KRTAP10-4 MUTATED KRTAP10-4 WILD-TYPE 
              5.455              14.010 
[1] "0.4 - 39.5 (5.5)"  "0.1 - 85.3 (14.0)"
         TCGA-05-4249          TCGA-05-4250          TCGA-05-4382 
"KRTAP10-4 WILD-TYPE" "KRTAP10-4 WILD-TYPE" "KRTAP10-4 WILD-TYPE" 
         TCGA-05-4384          TCGA-05-4390          TCGA-05-4396 
"KRTAP10-4 WILD-TYPE" "KRTAP10-4 WILD-TYPE" "KRTAP10-4 WILD-TYPE" 
         TCGA-05-4397          TCGA-05-4398          TCGA-05-4402 
"KRTAP10-4 WILD-TYPE" "KRTAP10-4 WILD-TYPE" "KRTAP10-4 WILD-TYPE" 
         TCGA-05-4405          TCGA-05-4415          TCGA-05-4417 
"KRTAP10-4 WILD-TYPE" "KRTAP10-4 WILD-TYPE" "KRTAP10-4 WILD-TYPE" 
         TCGA-05-4418          TCGA-05-4420          TCGA-05-4424 
"KRTAP10-4 WILD-TYPE" "KRTAP10-4 WILD-TYPE" "KRTAP10-4 WILD-TYPE" 
         TCGA-05-4426          TCGA-05-4427          TCGA-05-4430 
"KRTAP10-4 WILD-TYPE" "KRTAP10-4 WILD-TYPE" "KRTAP10-4 WILD-TYPE" 
         TCGA-05-4432          TCGA-05-4433          TCGA-05-4434 
"KRTAP10-4 WILD-TYPE" "KRTAP10-4 WILD-TYPE" "KRTAP10-4 WILD-TYPE" 
         TCGA-05-5420          TCGA-05-5423          TCGA-05-5425 
"KRTAP10-4 WILD-TYPE" "KRTAP10-4 WILD-TYPE" "KRTAP10-4 WILD-TYPE" 
         TCGA-05-5429          TCGA-05-5715          TCGA-35-3615 
"KRTAP10-4 WILD-TYPE" "KRTAP10-4 WILD-TYPE" "KRTAP10-4 WILD-TYPE" 
         TCGA-35-4122          TCGA-35-4123          TCGA-35-5375 
"KRTAP10-4 WILD-TYPE" "KRTAP10-4 WILD-TYPE" "KRTAP10-4 WILD-TYPE" 
         TCGA-38-4625          TCGA-38-4626          TCGA-38-4627 
"KRTAP10-4 WILD-TYPE" "KRTAP10-4 WILD-TYPE" "KRTAP10-4 WILD-TYPE" 
         TCGA-38-4628          TCGA-38-4629          TCGA-38-4630 
"KRTAP10-4 WILD-TYPE" "KRTAP10-4 WILD-TYPE" "KRTAP10-4 WILD-TYPE" 
         TCGA-38-4631          TCGA-38-4632          TCGA-38-6178 
"KRTAP10-4 WILD-TYPE" "KRTAP10-4 WILD-TYPE" "KRTAP10-4 WILD-TYPE" 
         TCGA-44-2655          TCGA-44-2656          TCGA-44-2657 
"KRTAP10-4 WILD-TYPE" "KRTAP10-4 WILD-TYPE" "KRTAP10-4 WILD-TYPE" 
         TCGA-44-2659          TCGA-44-2661          TCGA-44-2662 
"KRTAP10-4 WILD-TYPE" "KRTAP10-4 WILD-TYPE" "KRTAP10-4 WILD-TYPE" 
         TCGA-44-2665          TCGA-44-2666          TCGA-44-2668 
"KRTAP10-4 WILD-TYPE" "KRTAP10-4 WILD-TYPE" "KRTAP10-4 WILD-TYPE" 
         TCGA-44-3396          TCGA-44-3398          TCGA-44-3918 
"KRTAP10-4 WILD-TYPE" "KRTAP10-4 WILD-TYPE" "KRTAP10-4 WILD-TYPE" 
         TCGA-44-3919          TCGA-44-4112          TCGA-44-5643 
"KRTAP10-4 WILD-TYPE" "KRTAP10-4 WILD-TYPE" "KRTAP10-4 WILD-TYPE" 
         TCGA-44-5645          TCGA-44-6144          TCGA-44-6145 
"KRTAP10-4 WILD-TYPE" "KRTAP10-4 WILD-TYPE" "KRTAP10-4 WILD-TYPE" 
         TCGA-44-6146          TCGA-44-6147          TCGA-44-6148 
"KRTAP10-4 WILD-TYPE" "KRTAP10-4 WILD-TYPE" "KRTAP10-4 WILD-TYPE" 
         TCGA-44-6774          TCGA-44-6775          TCGA-44-6776 
"KRTAP10-4 WILD-TYPE" "KRTAP10-4 WILD-TYPE" "KRTAP10-4 WILD-TYPE" 
         TCGA-44-6777          TCGA-44-6778          TCGA-44-6779 
"KRTAP10-4 WILD-TYPE" "KRTAP10-4 WILD-TYPE" "KRTAP10-4 WILD-TYPE" 
         TCGA-49-4486          TCGA-49-4487          TCGA-49-4488 
"KRTAP10-4 WILD-TYPE" "KRTAP10-4 WILD-TYPE" "KRTAP10-4 WILD-TYPE" 
         TCGA-49-4490          TCGA-49-4494          TCGA-49-4501 
"KRTAP10-4 WILD-TYPE"   "KRTAP10-4 MUTATED" "KRTAP10-4 WILD-TYPE" 
         TCGA-49-4505          TCGA-49-4506          TCGA-49-4507 
"KRTAP10-4 WILD-TYPE" "KRTAP10-4 WILD-TYPE" "KRTAP10-4 WILD-TYPE" 
         TCGA-49-4510          TCGA-49-4512          TCGA-49-4514 
"KRTAP10-4 WILD-TYPE" "KRTAP10-4 WILD-TYPE" "KRTAP10-4 WILD-TYPE" 
         TCGA-49-6742          TCGA-49-6743          TCGA-49-6744 
"KRTAP10-4 WILD-TYPE" "KRTAP10-4 WILD-TYPE" "KRTAP10-4 WILD-TYPE" 
         TCGA-49-6745          TCGA-50-5044          TCGA-50-5045 
"KRTAP10-4 WILD-TYPE" "KRTAP10-4 WILD-TYPE" "KRTAP10-4 WILD-TYPE" 
         TCGA-50-5049          TCGA-50-5051          TCGA-50-5055 
"KRTAP10-4 WILD-TYPE" "KRTAP10-4 WILD-TYPE" "KRTAP10-4 WILD-TYPE" 
         TCGA-50-5066          TCGA-50-5068          TCGA-50-5072 
"KRTAP10-4 WILD-TYPE" "KRTAP10-4 WILD-TYPE"   "KRTAP10-4 MUTATED" 
         TCGA-50-5930          TCGA-50-5931          TCGA-50-5932 
"KRTAP10-4 WILD-TYPE" "KRTAP10-4 WILD-TYPE" "KRTAP10-4 WILD-TYPE" 
         TCGA-50-5933          TCGA-50-5935          TCGA-50-5936 
"KRTAP10-4 WILD-TYPE" "KRTAP10-4 WILD-TYPE" "KRTAP10-4 WILD-TYPE" 
         TCGA-50-5939          TCGA-50-5941          TCGA-50-5942 
"KRTAP10-4 WILD-TYPE" "KRTAP10-4 WILD-TYPE" "KRTAP10-4 WILD-TYPE" 
         TCGA-50-5944          TCGA-50-5946          TCGA-50-6590 
"KRTAP10-4 WILD-TYPE" "KRTAP10-4 WILD-TYPE" "KRTAP10-4 WILD-TYPE" 
         TCGA-50-6591          TCGA-50-6592          TCGA-50-6593 
"KRTAP10-4 WILD-TYPE" "KRTAP10-4 WILD-TYPE" "KRTAP10-4 WILD-TYPE" 
         TCGA-50-6594          TCGA-50-6595          TCGA-50-6597 
"KRTAP10-4 WILD-TYPE" "KRTAP10-4 WILD-TYPE" "KRTAP10-4 WILD-TYPE" 
         TCGA-55-1592          TCGA-55-1594          TCGA-55-1595 
"KRTAP10-4 WILD-TYPE" "KRTAP10-4 WILD-TYPE" "KRTAP10-4 WILD-TYPE" 
         TCGA-55-1596          TCGA-55-5899          TCGA-55-6543 
"KRTAP10-4 WILD-TYPE"   "KRTAP10-4 MUTATED" "KRTAP10-4 WILD-TYPE" 
         TCGA-55-6642          TCGA-55-6712          TCGA-64-1676 
"KRTAP10-4 WILD-TYPE" "KRTAP10-4 WILD-TYPE" "KRTAP10-4 WILD-TYPE" 
         TCGA-64-1677          TCGA-64-1678          TCGA-64-1680 
"KRTAP10-4 WILD-TYPE" "KRTAP10-4 WILD-TYPE" "KRTAP10-4 WILD-TYPE" 
         TCGA-64-5774          TCGA-64-5775          TCGA-64-5778 
"KRTAP10-4 WILD-TYPE" "KRTAP10-4 WILD-TYPE" "KRTAP10-4 WILD-TYPE" 
         TCGA-64-5779          TCGA-64-5781          TCGA-64-5815 
"KRTAP10-4 WILD-TYPE"   "KRTAP10-4 MUTATED" "KRTAP10-4 WILD-TYPE" 
         TCGA-67-3770          TCGA-67-3771          TCGA-67-3772 
"KRTAP10-4 WILD-TYPE" "KRTAP10-4 WILD-TYPE" "KRTAP10-4 WILD-TYPE" 
         TCGA-67-3773          TCGA-67-3774          TCGA-67-6215 
"KRTAP10-4 WILD-TYPE" "KRTAP10-4 WILD-TYPE" "KRTAP10-4 WILD-TYPE" 
         TCGA-67-6216          TCGA-67-6217          TCGA-71-6725 
"KRTAP10-4 WILD-TYPE" "KRTAP10-4 WILD-TYPE" "KRTAP10-4 WILD-TYPE" 
         TCGA-73-4658          TCGA-73-4659          TCGA-73-4662 
"KRTAP10-4 WILD-TYPE" "KRTAP10-4 WILD-TYPE" "KRTAP10-4 WILD-TYPE" 
         TCGA-73-4666          TCGA-73-4668          TCGA-73-4670 
"KRTAP10-4 WILD-TYPE" "KRTAP10-4 WILD-TYPE" "KRTAP10-4 WILD-TYPE" 
         TCGA-73-4675          TCGA-73-4676          TCGA-73-4677 
"KRTAP10-4 WILD-TYPE" "KRTAP10-4 WILD-TYPE" "KRTAP10-4 WILD-TYPE" 
         TCGA-91-6828          TCGA-91-6829          TCGA-91-6831 
"KRTAP10-4 WILD-TYPE" "KRTAP10-4 WILD-TYPE"   "KRTAP10-4 MUTATED" 
         TCGA-91-6835          TCGA-91-6836 
"KRTAP10-4 WILD-TYPE"   "KRTAP10-4 MUTATED" 
         TCGA-05-4249          TCGA-05-4250          TCGA-05-4382 
"KRTAP10-4 WILD-TYPE" "KRTAP10-4 WILD-TYPE" "KRTAP10-4 WILD-TYPE" 
         TCGA-05-4384          TCGA-05-4390          TCGA-05-4396 
"KRTAP10-4 WILD-TYPE" "KRTAP10-4 WILD-TYPE" "KRTAP10-4 WILD-TYPE" 
         TCGA-05-4397          TCGA-05-4398          TCGA-05-4402 
"KRTAP10-4 WILD-TYPE" "KRTAP10-4 WILD-TYPE" "KRTAP10-4 WILD-TYPE" 
         TCGA-05-4405          TCGA-05-4415          TCGA-05-4417 
"KRTAP10-4 WILD-TYPE" "KRTAP10-4 WILD-TYPE" "KRTAP10-4 WILD-TYPE" 
         TCGA-05-4418          TCGA-05-4420          TCGA-05-4424 
"KRTAP10-4 WILD-TYPE" "KRTAP10-4 WILD-TYPE" "KRTAP10-4 WILD-TYPE" 
         TCGA-05-4426          TCGA-05-4427          TCGA-05-4430 
"KRTAP10-4 WILD-TYPE" "KRTAP10-4 WILD-TYPE" "KRTAP10-4 WILD-TYPE" 
         TCGA-05-4432          TCGA-05-4433          TCGA-05-4434 
"KRTAP10-4 WILD-TYPE" "KRTAP10-4 WILD-TYPE" "KRTAP10-4 WILD-TYPE" 
         TCGA-05-5420          TCGA-05-5423          TCGA-05-5425 
"KRTAP10-4 WILD-TYPE" "KRTAP10-4 WILD-TYPE" "KRTAP10-4 WILD-TYPE" 
         TCGA-05-5429          TCGA-05-5715          TCGA-35-3615 
"KRTAP10-4 WILD-TYPE" "KRTAP10-4 WILD-TYPE" "KRTAP10-4 WILD-TYPE" 
         TCGA-35-4122          TCGA-35-4123          TCGA-35-5375 
"KRTAP10-4 WILD-TYPE" "KRTAP10-4 WILD-TYPE" "KRTAP10-4 WILD-TYPE" 
         TCGA-38-4625          TCGA-38-4626          TCGA-38-4627 
"KRTAP10-4 WILD-TYPE" "KRTAP10-4 WILD-TYPE" "KRTAP10-4 WILD-TYPE" 
         TCGA-38-4628          TCGA-38-4629          TCGA-38-4630 
"KRTAP10-4 WILD-TYPE" "KRTAP10-4 WILD-TYPE" "KRTAP10-4 WILD-TYPE" 
         TCGA-38-4631          TCGA-38-4632          TCGA-38-6178 
"KRTAP10-4 WILD-TYPE" "KRTAP10-4 WILD-TYPE" "KRTAP10-4 WILD-TYPE" 
         TCGA-44-2655          TCGA-44-2656          TCGA-44-2657 
"KRTAP10-4 WILD-TYPE" "KRTAP10-4 WILD-TYPE" "KRTAP10-4 WILD-TYPE" 
         TCGA-44-2659          TCGA-44-2661          TCGA-44-2662 
"KRTAP10-4 WILD-TYPE" "KRTAP10-4 WILD-TYPE" "KRTAP10-4 WILD-TYPE" 
         TCGA-44-2665          TCGA-44-2666          TCGA-44-2668 
"KRTAP10-4 WILD-TYPE" "KRTAP10-4 WILD-TYPE" "KRTAP10-4 WILD-TYPE" 
         TCGA-44-3396          TCGA-44-3398          TCGA-44-3918 
"KRTAP10-4 WILD-TYPE" "KRTAP10-4 WILD-TYPE" "KRTAP10-4 WILD-TYPE" 
         TCGA-44-3919          TCGA-44-4112          TCGA-44-5643 
"KRTAP10-4 WILD-TYPE" "KRTAP10-4 WILD-TYPE" "KRTAP10-4 WILD-TYPE" 
         TCGA-44-5645          TCGA-44-6144          TCGA-44-6145 
"KRTAP10-4 WILD-TYPE" "KRTAP10-4 WILD-TYPE" "KRTAP10-4 WILD-TYPE" 
         TCGA-44-6146          TCGA-44-6147          TCGA-44-6148 
"KRTAP10-4 WILD-TYPE" "KRTAP10-4 WILD-TYPE" "KRTAP10-4 WILD-TYPE" 
         TCGA-44-6774          TCGA-44-6775          TCGA-44-6776 
"KRTAP10-4 WILD-TYPE" "KRTAP10-4 WILD-TYPE" "KRTAP10-4 WILD-TYPE" 
         TCGA-44-6777          TCGA-44-6778          TCGA-44-6779 
"KRTAP10-4 WILD-TYPE" "KRTAP10-4 WILD-TYPE" "KRTAP10-4 WILD-TYPE" 
         TCGA-49-4486          TCGA-49-4487          TCGA-49-4488 
"KRTAP10-4 WILD-TYPE" "KRTAP10-4 WILD-TYPE" "KRTAP10-4 WILD-TYPE" 
         TCGA-49-4490          TCGA-49-4494          TCGA-49-4501 
"KRTAP10-4 WILD-TYPE"   "KRTAP10-4 MUTATED" "KRTAP10-4 WILD-TYPE" 
         TCGA-49-4505          TCGA-49-4506          TCGA-49-4507 
"KRTAP10-4 WILD-TYPE" "KRTAP10-4 WILD-TYPE" "KRTAP10-4 WILD-TYPE" 
         TCGA-49-4510          TCGA-49-4512          TCGA-49-4514 
"KRTAP10-4 WILD-TYPE" "KRTAP10-4 WILD-TYPE" "KRTAP10-4 WILD-TYPE" 
         TCGA-49-6742          TCGA-49-6743          TCGA-49-6744 
"KRTAP10-4 WILD-TYPE" "KRTAP10-4 WILD-TYPE" "KRTAP10-4 WILD-TYPE" 
         TCGA-49-6745          TCGA-50-5044          TCGA-50-5045 
"KRTAP10-4 WILD-TYPE" "KRTAP10-4 WILD-TYPE" "KRTAP10-4 WILD-TYPE" 
         TCGA-50-5049          TCGA-50-5051          TCGA-50-5055 
"KRTAP10-4 WILD-TYPE" "KRTAP10-4 WILD-TYPE" "KRTAP10-4 WILD-TYPE" 
         TCGA-50-5066          TCGA-50-5068          TCGA-50-5072 
"KRTAP10-4 WILD-TYPE" "KRTAP10-4 WILD-TYPE"   "KRTAP10-4 MUTATED" 
         TCGA-50-5930          TCGA-50-5931          TCGA-50-5932 
"KRTAP10-4 WILD-TYPE" "KRTAP10-4 WILD-TYPE" "KRTAP10-4 WILD-TYPE" 
         TCGA-50-5933          TCGA-50-5935          TCGA-50-5936 
"KRTAP10-4 WILD-TYPE" "KRTAP10-4 WILD-TYPE" "KRTAP10-4 WILD-TYPE" 
         TCGA-50-5939          TCGA-50-5941          TCGA-50-5942 
"KRTAP10-4 WILD-TYPE" "KRTAP10-4 WILD-TYPE" "KRTAP10-4 WILD-TYPE" 
         TCGA-50-5944          TCGA-50-5946          TCGA-50-6590 
"KRTAP10-4 WILD-TYPE" "KRTAP10-4 WILD-TYPE" "KRTAP10-4 WILD-TYPE" 
         TCGA-50-6591          TCGA-50-6592          TCGA-50-6593 
"KRTAP10-4 WILD-TYPE" "KRTAP10-4 WILD-TYPE" "KRTAP10-4 WILD-TYPE" 
         TCGA-50-6594          TCGA-50-6595          TCGA-50-6597 
"KRTAP10-4 WILD-TYPE" "KRTAP10-4 WILD-TYPE" "KRTAP10-4 WILD-TYPE" 
         TCGA-55-1592          TCGA-55-1594          TCGA-55-1595 
"KRTAP10-4 WILD-TYPE" "KRTAP10-4 WILD-TYPE" "KRTAP10-4 WILD-TYPE" 
         TCGA-55-1596          TCGA-55-5899          TCGA-55-6543 
"KRTAP10-4 WILD-TYPE"   "KRTAP10-4 MUTATED" "KRTAP10-4 WILD-TYPE" 
         TCGA-55-6642          TCGA-55-6712          TCGA-64-1676 
"KRTAP10-4 WILD-TYPE" "KRTAP10-4 WILD-TYPE" "KRTAP10-4 WILD-TYPE" 
         TCGA-64-1677          TCGA-64-1678          TCGA-64-1680 
"KRTAP10-4 WILD-TYPE" "KRTAP10-4 WILD-TYPE" "KRTAP10-4 WILD-TYPE" 
         TCGA-64-5774          TCGA-64-5775          TCGA-64-5778 
"KRTAP10-4 WILD-TYPE" "KRTAP10-4 WILD-TYPE" "KRTAP10-4 WILD-TYPE" 
         TCGA-64-5779          TCGA-64-5781          TCGA-64-5815 
"KRTAP10-4 WILD-TYPE"   "KRTAP10-4 MUTATED" "KRTAP10-4 WILD-TYPE" 
         TCGA-67-3770          TCGA-67-3771          TCGA-67-3772 
"KRTAP10-4 WILD-TYPE" "KRTAP10-4 WILD-TYPE" "KRTAP10-4 WILD-TYPE" 
         TCGA-67-3773          TCGA-67-3774          TCGA-67-6215 
"KRTAP10-4 WILD-TYPE" "KRTAP10-4 WILD-TYPE" "KRTAP10-4 WILD-TYPE" 
         TCGA-67-6216          TCGA-67-6217          TCGA-71-6725 
"KRTAP10-4 WILD-TYPE" "KRTAP10-4 WILD-TYPE" "KRTAP10-4 WILD-TYPE" 
         TCGA-73-4658          TCGA-73-4659          TCGA-73-4662 
"KRTAP10-4 WILD-TYPE" "KRTAP10-4 WILD-TYPE" "KRTAP10-4 WILD-TYPE" 
         TCGA-73-4666          TCGA-73-4668          TCGA-73-4670 
"KRTAP10-4 WILD-TYPE" "KRTAP10-4 WILD-TYPE" "KRTAP10-4 WILD-TYPE" 
         TCGA-73-4675          TCGA-73-4676          TCGA-73-4677 
"KRTAP10-4 WILD-TYPE" "KRTAP10-4 WILD-TYPE" "KRTAP10-4 WILD-TYPE" 
         TCGA-91-6828          TCGA-91-6829          TCGA-91-6831 
"KRTAP10-4 WILD-TYPE" "KRTAP10-4 WILD-TYPE"   "KRTAP10-4 MUTATED" 
         TCGA-91-6835          TCGA-91-6836 
"KRTAP10-4 WILD-TYPE"   "KRTAP10-4 MUTATED" 
         TCGA-05-4249          TCGA-05-4250          TCGA-05-4382 
"KRTAP10-4 WILD-TYPE" "KRTAP10-4 WILD-TYPE" "KRTAP10-4 WILD-TYPE" 
         TCGA-05-4384          TCGA-05-4390          TCGA-05-4396 
"KRTAP10-4 WILD-TYPE" "KRTAP10-4 WILD-TYPE" "KRTAP10-4 WILD-TYPE" 
         TCGA-05-4397          TCGA-05-4398          TCGA-05-4402 
"KRTAP10-4 WILD-TYPE" "KRTAP10-4 WILD-TYPE" "KRTAP10-4 WILD-TYPE" 
         TCGA-05-4405          TCGA-05-4415          TCGA-05-4417 
"KRTAP10-4 WILD-TYPE" "KRTAP10-4 WILD-TYPE" "KRTAP10-4 WILD-TYPE" 
         TCGA-05-4418          TCGA-05-4420          TCGA-05-4424 
"KRTAP10-4 WILD-TYPE" "KRTAP10-4 WILD-TYPE" "KRTAP10-4 WILD-TYPE" 
         TCGA-05-4426          TCGA-05-4427          TCGA-05-4430 
"KRTAP10-4 WILD-TYPE" "KRTAP10-4 WILD-TYPE" "KRTAP10-4 WILD-TYPE" 
         TCGA-05-4432          TCGA-05-4433          TCGA-05-4434 
"KRTAP10-4 WILD-TYPE" "KRTAP10-4 WILD-TYPE" "KRTAP10-4 WILD-TYPE" 
         TCGA-05-5420          TCGA-05-5423          TCGA-05-5425 
"KRTAP10-4 WILD-TYPE" "KRTAP10-4 WILD-TYPE" "KRTAP10-4 WILD-TYPE" 
         TCGA-05-5429          TCGA-05-5715          TCGA-35-3615 
"KRTAP10-4 WILD-TYPE" "KRTAP10-4 WILD-TYPE" "KRTAP10-4 WILD-TYPE" 
         TCGA-35-4122          TCGA-35-4123          TCGA-35-5375 
"KRTAP10-4 WILD-TYPE" "KRTAP10-4 WILD-TYPE" "KRTAP10-4 WILD-TYPE" 
         TCGA-38-4625          TCGA-38-4626          TCGA-38-4627 
"KRTAP10-4 WILD-TYPE" "KRTAP10-4 WILD-TYPE" "KRTAP10-4 WILD-TYPE" 
         TCGA-38-4628          TCGA-38-4629          TCGA-38-4630 
"KRTAP10-4 WILD-TYPE" "KRTAP10-4 WILD-TYPE" "KRTAP10-4 WILD-TYPE" 
         TCGA-38-4631          TCGA-38-4632          TCGA-38-6178 
"KRTAP10-4 WILD-TYPE" "KRTAP10-4 WILD-TYPE" "KRTAP10-4 WILD-TYPE" 
         TCGA-44-2655          TCGA-44-2656          TCGA-44-2657 
"KRTAP10-4 WILD-TYPE" "KRTAP10-4 WILD-TYPE" "KRTAP10-4 WILD-TYPE" 
         TCGA-44-2659          TCGA-44-2661          TCGA-44-2662 
"KRTAP10-4 WILD-TYPE" "KRTAP10-4 WILD-TYPE" "KRTAP10-4 WILD-TYPE" 
         TCGA-44-2665          TCGA-44-2666          TCGA-44-2668 
"KRTAP10-4 WILD-TYPE" "KRTAP10-4 WILD-TYPE" "KRTAP10-4 WILD-TYPE" 
         TCGA-44-3396          TCGA-44-3398          TCGA-44-3918 
"KRTAP10-4 WILD-TYPE" "KRTAP10-4 WILD-TYPE" "KRTAP10-4 WILD-TYPE" 
         TCGA-44-3919          TCGA-44-4112          TCGA-44-5643 
"KRTAP10-4 WILD-TYPE" "KRTAP10-4 WILD-TYPE" "KRTAP10-4 WILD-TYPE" 
         TCGA-44-5645          TCGA-44-6144          TCGA-44-6145 
"KRTAP10-4 WILD-TYPE" "KRTAP10-4 WILD-TYPE" "KRTAP10-4 WILD-TYPE" 
         TCGA-44-6146          TCGA-44-6147          TCGA-44-6148 
"KRTAP10-4 WILD-TYPE" "KRTAP10-4 WILD-TYPE" "KRTAP10-4 WILD-TYPE" 
         TCGA-44-6774          TCGA-44-6775          TCGA-44-6776 
"KRTAP10-4 WILD-TYPE" "KRTAP10-4 WILD-TYPE" "KRTAP10-4 WILD-TYPE" 
         TCGA-44-6777          TCGA-44-6778          TCGA-44-6779 
"KRTAP10-4 WILD-TYPE" "KRTAP10-4 WILD-TYPE" "KRTAP10-4 WILD-TYPE" 
         TCGA-49-4486          TCGA-49-4487          TCGA-49-4488 
"KRTAP10-4 WILD-TYPE" "KRTAP10-4 WILD-TYPE" "KRTAP10-4 WILD-TYPE" 
         TCGA-49-4490          TCGA-49-4494          TCGA-49-4501 
"KRTAP10-4 WILD-TYPE"   "KRTAP10-4 MUTATED" "KRTAP10-4 WILD-TYPE" 
         TCGA-49-4505          TCGA-49-4506          TCGA-49-4507 
"KRTAP10-4 WILD-TYPE" "KRTAP10-4 WILD-TYPE" "KRTAP10-4 WILD-TYPE" 
         TCGA-49-4510          TCGA-49-4512          TCGA-49-4514 
"KRTAP10-4 WILD-TYPE" "KRTAP10-4 WILD-TYPE" "KRTAP10-4 WILD-TYPE" 
         TCGA-49-6742          TCGA-49-6743          TCGA-49-6744 
"KRTAP10-4 WILD-TYPE" "KRTAP10-4 WILD-TYPE" "KRTAP10-4 WILD-TYPE" 
         TCGA-49-6745          TCGA-50-5044          TCGA-50-5045 
"KRTAP10-4 WILD-TYPE" "KRTAP10-4 WILD-TYPE" "KRTAP10-4 WILD-TYPE" 
         TCGA-50-5049          TCGA-50-5051          TCGA-50-5055 
"KRTAP10-4 WILD-TYPE" "KRTAP10-4 WILD-TYPE" "KRTAP10-4 WILD-TYPE" 
         TCGA-50-5066          TCGA-50-5068          TCGA-50-5072 
"KRTAP10-4 WILD-TYPE" "KRTAP10-4 WILD-TYPE"   "KRTAP10-4 MUTATED" 
         TCGA-50-5930          TCGA-50-5931          TCGA-50-5932 
"KRTAP10-4 WILD-TYPE" "KRTAP10-4 WILD-TYPE" "KRTAP10-4 WILD-TYPE" 
         TCGA-50-5933          TCGA-50-5935          TCGA-50-5936 
"KRTAP10-4 WILD-TYPE" "KRTAP10-4 WILD-TYPE" "KRTAP10-4 WILD-TYPE" 
         TCGA-50-5939          TCGA-50-5941          TCGA-50-5942 
"KRTAP10-4 WILD-TYPE" "KRTAP10-4 WILD-TYPE" "KRTAP10-4 WILD-TYPE" 
         TCGA-50-5944          TCGA-50-5946          TCGA-50-6590 
"KRTAP10-4 WILD-TYPE" "KRTAP10-4 WILD-TYPE" "KRTAP10-4 WILD-TYPE" 
         TCGA-50-6591          TCGA-50-6592          TCGA-50-6593 
"KRTAP10-4 WILD-TYPE" "KRTAP10-4 WILD-TYPE" "KRTAP10-4 WILD-TYPE" 
         TCGA-50-6594          TCGA-50-6595          TCGA-50-6597 
"KRTAP10-4 WILD-TYPE" "KRTAP10-4 WILD-TYPE" "KRTAP10-4 WILD-TYPE" 
         TCGA-55-1592          TCGA-55-1594          TCGA-55-1595 
"KRTAP10-4 WILD-TYPE" "KRTAP10-4 WILD-TYPE" "KRTAP10-4 WILD-TYPE" 
         TCGA-55-1596          TCGA-55-5899          TCGA-55-6543 
"KRTAP10-4 WILD-TYPE"   "KRTAP10-4 MUTATED" "KRTAP10-4 WILD-TYPE" 
         TCGA-55-6642          TCGA-55-6712          TCGA-64-1676 
"KRTAP10-4 WILD-TYPE" "KRTAP10-4 WILD-TYPE" "KRTAP10-4 WILD-TYPE" 
         TCGA-64-1677          TCGA-64-1678          TCGA-64-1680 
"KRTAP10-4 WILD-TYPE" "KRTAP10-4 WILD-TYPE" "KRTAP10-4 WILD-TYPE" 
         TCGA-64-5774          TCGA-64-5775          TCGA-64-5778 
"KRTAP10-4 WILD-TYPE" "KRTAP10-4 WILD-TYPE" "KRTAP10-4 WILD-TYPE" 
         TCGA-64-5779          TCGA-64-5781          TCGA-64-5815 
"KRTAP10-4 WILD-TYPE"   "KRTAP10-4 MUTATED" "KRTAP10-4 WILD-TYPE" 
         TCGA-67-3770          TCGA-67-3771          TCGA-67-3772 
"KRTAP10-4 WILD-TYPE" "KRTAP10-4 WILD-TYPE" "KRTAP10-4 WILD-TYPE" 
         TCGA-67-3773          TCGA-67-3774          TCGA-67-6215 
"KRTAP10-4 WILD-TYPE" "KRTAP10-4 WILD-TYPE" "KRTAP10-4 WILD-TYPE" 
         TCGA-67-6216          TCGA-67-6217          TCGA-71-6725 
"KRTAP10-4 WILD-TYPE" "KRTAP10-4 WILD-TYPE" "KRTAP10-4 WILD-TYPE" 
         TCGA-73-4658          TCGA-73-4659          TCGA-73-4662 
"KRTAP10-4 WILD-TYPE" "KRTAP10-4 WILD-TYPE" "KRTAP10-4 WILD-TYPE" 
         TCGA-73-4666          TCGA-73-4668          TCGA-73-4670 
"KRTAP10-4 WILD-TYPE" "KRTAP10-4 WILD-TYPE" "KRTAP10-4 WILD-TYPE" 
         TCGA-73-4675          TCGA-73-4676          TCGA-73-4677 
"KRTAP10-4 WILD-TYPE" "KRTAP10-4 WILD-TYPE" "KRTAP10-4 WILD-TYPE" 
         TCGA-91-6828          TCGA-91-6829          TCGA-91-6831 
"KRTAP10-4 WILD-TYPE" "KRTAP10-4 WILD-TYPE"   "KRTAP10-4 MUTATED" 
         TCGA-91-6835          TCGA-91-6836 
"KRTAP10-4 WILD-TYPE"   "KRTAP10-4 MUTATED" 
[1] "hr=" "1.4"
D283V2, continuous
D283V3, binary
[1] "tbl2"
                     cls
clus                  [,1] [,2]
  KRTAP10-4 MUTATED      2    4
  KRTAP10-4 WILD-TYPE   91   75
        clus
vv       KRTAP10-4 MUTATED KRTAP10-4 WILD-TYPE
  FEMALE                 2                  91
  MALE                   4                  75
D283V4, continuous
D283V5, multiclass
D283V6, multiclass
    clus
vv   KRTAP10-4 MUTATED KRTAP10-4 WILD-TYPE
  T1                 1                  40
  T2                 4                 104
  T3                 1                  13
  T4                 0                   8
D283V7, multiclass
       clus
vv      KRTAP10-4 MUTATED KRTAP10-4 WILD-TYPE
  N0                    3                  92
  N1                    1                  36
  N2+N3                 2                  33
D283V8, multiclass
    clus
vv   KRTAP10-4 MUTATED KRTAP10-4 WILD-TYPE
  M0                 4                 133
  M1                 0                   9
  MX                 2                  20
D283V9, multiclass
     clus
vv    KRTAP10-4 MUTATED KRTAP10-4 WILD-TYPE
  I                   4                  84
  II                  0                  33
  III                 2                  37
  IV                  0                   9
D283V10, binary
[1] "tbl2"
                     cls
clus                  [,1] [,2]
  KRTAP10-4 MUTATED      1    5
  KRTAP10-4 WILD-TYPE   15  151
     clus
vv    KRTAP10-4 MUTATED KRTAP10-4 WILD-TYPE
  NO                  1                  15
  YES                 5                 151
D283V11, continuous
D283V12, continuous
D283V13, multiclass
                                             clus
vv                                            KRTAP10-4 MUTATED
  CURRENT REFORMED SMOKER FOR < OR = 15 YEARS                 1
  CURRENT REFORMED SMOKER FOR > 15 YEARS                      2
  CURRENT SMOKER                                              3
  LIFELONG NON-SMOKER                                         0
                                             clus
vv                                            KRTAP10-4 WILD-TYPE
  CURRENT REFORMED SMOKER FOR < OR = 15 YEARS                  61
  CURRENT REFORMED SMOKER FOR > 15 YEARS                       44
  CURRENT SMOKER                                               25
  LIFELONG NON-SMOKER                                          24
D283V14, continuous

Clustering(284) Variable = OR5L2 MUTATION ANALYSIS
D284V1, survival
                 sevent
clus2              0  1
  OR5L2 MUTATED    9  3
  OR5L2 WILD-TYPE 90 47
  OR5L2 MUTATED OR5L2 WILD-TYPE 
             12             137 
  OR5L2 MUTATED OR5L2 WILD-TYPE 
              3              47 
$`OR5L2 MUTATED`
TCGA-05-4250 TCGA-05-4415 TCGA-05-4427 TCGA-38-4631 TCGA-44-3398 TCGA-44-6144 
        3.98         2.96        26.01        11.64         8.32         0.30 
TCGA-44-6145 TCGA-49-4514 TCGA-49-6742 TCGA-49-6743 TCGA-50-5049 TCGA-67-3772 
        3.35        43.20        15.02        12.13        48.82         0.59 

$`OR5L2 WILD-TYPE`
TCGA-05-4249 TCGA-05-4382 TCGA-05-4384 TCGA-05-4390 TCGA-05-4396 TCGA-05-4397 
       38.07        19.92        14.01        37.02         9.96        24.03 
TCGA-05-4398 TCGA-05-4402 TCGA-05-4405 TCGA-05-4417 TCGA-05-4418 TCGA-05-4420 
       47.05         8.02        20.05        14.93         8.98        29.95 
TCGA-05-4424 TCGA-05-4426 TCGA-05-4430 TCGA-05-4432 TCGA-05-4433 TCGA-05-4434 
       30.02        26.01        25.02        25.02        24.00        15.02 
TCGA-05-5420 TCGA-05-5423 TCGA-05-5425 TCGA-05-5429 TCGA-05-5715 TCGA-35-3615 
        1.02         4.96         2.96         0.99         2.04         0.46 
TCGA-35-4122 TCGA-35-4123 TCGA-35-5375 TCGA-38-4625 TCGA-38-4626 TCGA-38-4627 
        7.36         5.95         8.68        47.61        85.32        37.71 
TCGA-38-4628 TCGA-38-4629 TCGA-38-4630 TCGA-38-4632 TCGA-38-6178 TCGA-44-2655 
       49.02        28.37        35.28        44.61         5.19        18.87 
TCGA-44-2656 TCGA-44-2657 TCGA-44-2659 TCGA-44-2661 TCGA-44-2662 TCGA-44-2665 
       19.10        13.15        17.39         3.39        15.78        13.15 
TCGA-44-2666 TCGA-44-2668 TCGA-44-3396 TCGA-44-3918 TCGA-44-3919 TCGA-44-4112 
        3.19         8.09        10.22         6.44         6.21         4.60 
TCGA-44-5643 TCGA-44-5645 TCGA-44-6146 TCGA-44-6147 TCGA-44-6148 TCGA-44-6774 
        3.48         6.84         9.93         7.76         3.12         5.42 
TCGA-44-6775 TCGA-44-6776 TCGA-44-6777 TCGA-44-6778 TCGA-44-6779 TCGA-49-4486 
        2.70        63.72        32.45        36.49        16.41        76.21 
TCGA-49-4487 TCGA-49-4488 TCGA-49-4490 TCGA-49-4494 TCGA-49-4501 TCGA-49-4505 
       28.11        28.57        12.66        35.54        46.72        14.07 
TCGA-49-4506 TCGA-49-4507 TCGA-49-4510 TCGA-49-4512 TCGA-49-6744 TCGA-49-6745 
       32.84         8.81        29.46        29.75        12.99         4.93 
TCGA-50-5044 TCGA-50-5045 TCGA-50-5051 TCGA-50-5055 TCGA-50-5066 TCGA-50-5068 
       20.48        71.47        14.96        25.81         9.76        49.28 
TCGA-50-5072 TCGA-50-5930 TCGA-50-5931 TCGA-50-5932 TCGA-50-5933 TCGA-50-5935 
        8.05         9.27         8.78        35.87        77.88        21.47 
TCGA-50-5936 TCGA-50-5939 TCGA-50-5941 TCGA-50-5942 TCGA-50-5944 TCGA-50-5946 
        8.45        15.12         9.37         4.44        12.26        11.47 
TCGA-50-6590 TCGA-50-6591 TCGA-50-6592 TCGA-50-6593 TCGA-50-6594 TCGA-50-6595 
       42.31         3.88        25.51        11.05        12.16         6.21 
TCGA-50-6597 TCGA-55-1592 TCGA-55-1594 TCGA-55-1595 TCGA-55-1596 TCGA-55-5899 
       33.37        23.05        38.73        48.62        45.17         2.86 
TCGA-55-6543 TCGA-55-6642 TCGA-55-6712 TCGA-64-1676 TCGA-64-1677 TCGA-64-1678 
        0.07        32.61         0.79        56.81        20.65        39.09 
TCGA-64-1680 TCGA-64-5774 TCGA-64-5775 TCGA-64-5778 TCGA-64-5779 TCGA-64-5781 
       37.02        83.84         0.10        30.44        16.67        39.52 
TCGA-64-5815 TCGA-67-3770 TCGA-67-3771 TCGA-67-3773 TCGA-67-3774 TCGA-67-6215 
        7.33         0.99         1.97         2.04         0.59         0.89 
TCGA-67-6216 TCGA-67-6217 TCGA-71-6725 TCGA-73-4658 TCGA-73-4659 TCGA-73-4662 
        0.69        13.87         2.01        52.57        23.38        29.95 
TCGA-73-4666 TCGA-73-4668 TCGA-73-4670 TCGA-73-4675 TCGA-73-4676 TCGA-73-4677 
       20.28        15.35         0.46         1.32         4.01         1.25 
TCGA-91-6828 TCGA-91-6829 TCGA-91-6831 TCGA-91-6835 TCGA-91-6836 
        1.22        41.33         1.28         1.15         0.36 

  OR5L2 MUTATED OR5L2 WILD-TYPE 
           0.30            0.07 
  OR5L2 MUTATED OR5L2 WILD-TYPE 
          48.82           85.32 
  OR5L2 MUTATED OR5L2 WILD-TYPE 
           9.98           14.07 
[1] "0.3 - 48.8 (10.0)" "0.1 - 85.3 (14.1)"
     TCGA-05-4249      TCGA-05-4250      TCGA-05-4382      TCGA-05-4384 
"OR5L2 WILD-TYPE"   "OR5L2 MUTATED" "OR5L2 WILD-TYPE" "OR5L2 WILD-TYPE" 
     TCGA-05-4390      TCGA-05-4396      TCGA-05-4397      TCGA-05-4398 
"OR5L2 WILD-TYPE" "OR5L2 WILD-TYPE" "OR5L2 WILD-TYPE" "OR5L2 WILD-TYPE" 
     TCGA-05-4402      TCGA-05-4405      TCGA-05-4415      TCGA-05-4417 
"OR5L2 WILD-TYPE" "OR5L2 WILD-TYPE"   "OR5L2 MUTATED" "OR5L2 WILD-TYPE" 
     TCGA-05-4418      TCGA-05-4420      TCGA-05-4424      TCGA-05-4426 
"OR5L2 WILD-TYPE" "OR5L2 WILD-TYPE" "OR5L2 WILD-TYPE" "OR5L2 WILD-TYPE" 
     TCGA-05-4427      TCGA-05-4430      TCGA-05-4432      TCGA-05-4433 
  "OR5L2 MUTATED" "OR5L2 WILD-TYPE" "OR5L2 WILD-TYPE" "OR5L2 WILD-TYPE" 
     TCGA-05-4434      TCGA-05-5420      TCGA-05-5423      TCGA-05-5425 
"OR5L2 WILD-TYPE" "OR5L2 WILD-TYPE" "OR5L2 WILD-TYPE" "OR5L2 WILD-TYPE" 
     TCGA-05-5429      TCGA-05-5715      TCGA-35-3615      TCGA-35-4122 
"OR5L2 WILD-TYPE" "OR5L2 WILD-TYPE" "OR5L2 WILD-TYPE" "OR5L2 WILD-TYPE" 
     TCGA-35-4123      TCGA-35-5375      TCGA-38-4625      TCGA-38-4626 
"OR5L2 WILD-TYPE" "OR5L2 WILD-TYPE" "OR5L2 WILD-TYPE" "OR5L2 WILD-TYPE" 
     TCGA-38-4627      TCGA-38-4628      TCGA-38-4629      TCGA-38-4630 
"OR5L2 WILD-TYPE" "OR5L2 WILD-TYPE" "OR5L2 WILD-TYPE" "OR5L2 WILD-TYPE" 
     TCGA-38-4631      TCGA-38-4632      TCGA-38-6178      TCGA-44-2655 
  "OR5L2 MUTATED" "OR5L2 WILD-TYPE" "OR5L2 WILD-TYPE" "OR5L2 WILD-TYPE" 
     TCGA-44-2656      TCGA-44-2657      TCGA-44-2659      TCGA-44-2661 
"OR5L2 WILD-TYPE" "OR5L2 WILD-TYPE" "OR5L2 WILD-TYPE" "OR5L2 WILD-TYPE" 
     TCGA-44-2662      TCGA-44-2665      TCGA-44-2666      TCGA-44-2668 
"OR5L2 WILD-TYPE" "OR5L2 WILD-TYPE" "OR5L2 WILD-TYPE" "OR5L2 WILD-TYPE" 
     TCGA-44-3396      TCGA-44-3398      TCGA-44-3918      TCGA-44-3919 
"OR5L2 WILD-TYPE"   "OR5L2 MUTATED" "OR5L2 WILD-TYPE" "OR5L2 WILD-TYPE" 
     TCGA-44-4112      TCGA-44-5643      TCGA-44-5645      TCGA-44-6144 
"OR5L2 WILD-TYPE" "OR5L2 WILD-TYPE" "OR5L2 WILD-TYPE"   "OR5L2 MUTATED" 
     TCGA-44-6145      TCGA-44-6146      TCGA-44-6147      TCGA-44-6148 
  "OR5L2 MUTATED" "OR5L2 WILD-TYPE" "OR5L2 WILD-TYPE" "OR5L2 WILD-TYPE" 
     TCGA-44-6774      TCGA-44-6775      TCGA-44-6776      TCGA-44-6777 
"OR5L2 WILD-TYPE" "OR5L2 WILD-TYPE" "OR5L2 WILD-TYPE" "OR5L2 WILD-TYPE" 
     TCGA-44-6778      TCGA-44-6779      TCGA-49-4486      TCGA-49-4487 
"OR5L2 WILD-TYPE" "OR5L2 WILD-TYPE" "OR5L2 WILD-TYPE" "OR5L2 WILD-TYPE" 
     TCGA-49-4488      TCGA-49-4490      TCGA-49-4494      TCGA-49-4501 
"OR5L2 WILD-TYPE" "OR5L2 WILD-TYPE" "OR5L2 WILD-TYPE" "OR5L2 WILD-TYPE" 
     TCGA-49-4505      TCGA-49-4506      TCGA-49-4507      TCGA-49-4510 
"OR5L2 WILD-TYPE" "OR5L2 WILD-TYPE" "OR5L2 WILD-TYPE" "OR5L2 WILD-TYPE" 
     TCGA-49-4512      TCGA-49-4514      TCGA-49-6742      TCGA-49-6743 
"OR5L2 WILD-TYPE"   "OR5L2 MUTATED"   "OR5L2 MUTATED"   "OR5L2 MUTATED" 
     TCGA-49-6744      TCGA-49-6745      TCGA-50-5044      TCGA-50-5045 
"OR5L2 WILD-TYPE" "OR5L2 WILD-TYPE" "OR5L2 WILD-TYPE" "OR5L2 WILD-TYPE" 
     TCGA-50-5049      TCGA-50-5051      TCGA-50-5055      TCGA-50-5066 
  "OR5L2 MUTATED" "OR5L2 WILD-TYPE" "OR5L2 WILD-TYPE" "OR5L2 WILD-TYPE" 
     TCGA-50-5068      TCGA-50-5072      TCGA-50-5930      TCGA-50-5931 
"OR5L2 WILD-TYPE" "OR5L2 WILD-TYPE" "OR5L2 WILD-TYPE" "OR5L2 WILD-TYPE" 
     TCGA-50-5932      TCGA-50-5933      TCGA-50-5935      TCGA-50-5936 
"OR5L2 WILD-TYPE" "OR5L2 WILD-TYPE" "OR5L2 WILD-TYPE" "OR5L2 WILD-TYPE" 
     TCGA-50-5939      TCGA-50-5941      TCGA-50-5942      TCGA-50-5944 
"OR5L2 WILD-TYPE" "OR5L2 WILD-TYPE" "OR5L2 WILD-TYPE" "OR5L2 WILD-TYPE" 
     TCGA-50-5946      TCGA-50-6590      TCGA-50-6591      TCGA-50-6592 
"OR5L2 WILD-TYPE" "OR5L2 WILD-TYPE" "OR5L2 WILD-TYPE" "OR5L2 WILD-TYPE" 
     TCGA-50-6593      TCGA-50-6594      TCGA-50-6595      TCGA-50-6597 
"OR5L2 WILD-TYPE" "OR5L2 WILD-TYPE" "OR5L2 WILD-TYPE" "OR5L2 WILD-TYPE" 
     TCGA-55-1592      TCGA-55-1594      TCGA-55-1595      TCGA-55-1596 
"OR5L2 WILD-TYPE" "OR5L2 WILD-TYPE" "OR5L2 WILD-TYPE" "OR5L2 WILD-TYPE" 
     TCGA-55-5899      TCGA-55-6543      TCGA-55-6642      TCGA-55-6712 
"OR5L2 WILD-TYPE" "OR5L2 WILD-TYPE" "OR5L2 WILD-TYPE" "OR5L2 WILD-TYPE" 
     TCGA-64-1676      TCGA-64-1677      TCGA-64-1678      TCGA-64-1680 
"OR5L2 WILD-TYPE" "OR5L2 WILD-TYPE" "OR5L2 WILD-TYPE" "OR5L2 WILD-TYPE" 
     TCGA-64-5774      TCGA-64-5775      TCGA-64-5778      TCGA-64-5779 
"OR5L2 WILD-TYPE" "OR5L2 WILD-TYPE" "OR5L2 WILD-TYPE" "OR5L2 WILD-TYPE" 
     TCGA-64-5781      TCGA-64-5815      TCGA-67-3770      TCGA-67-3771 
"OR5L2 WILD-TYPE" "OR5L2 WILD-TYPE" "OR5L2 WILD-TYPE" "OR5L2 WILD-TYPE" 
     TCGA-67-3772      TCGA-67-3773      TCGA-67-3774      TCGA-67-6215 
  "OR5L2 MUTATED" "OR5L2 WILD-TYPE" "OR5L2 WILD-TYPE" "OR5L2 WILD-TYPE" 
     TCGA-67-6216      TCGA-67-6217      TCGA-71-6725      TCGA-73-4658 
"OR5L2 WILD-TYPE" "OR5L2 WILD-TYPE" "OR5L2 WILD-TYPE" "OR5L2 WILD-TYPE" 
     TCGA-73-4659      TCGA-73-4662      TCGA-73-4666      TCGA-73-4668 
"OR5L2 WILD-TYPE" "OR5L2 WILD-TYPE" "OR5L2 WILD-TYPE" "OR5L2 WILD-TYPE" 
     TCGA-73-4670      TCGA-73-4675      TCGA-73-4676      TCGA-73-4677 
"OR5L2 WILD-TYPE" "OR5L2 WILD-TYPE" "OR5L2 WILD-TYPE" "OR5L2 WILD-TYPE" 
     TCGA-91-6828      TCGA-91-6829      TCGA-91-6831      TCGA-91-6835 
"OR5L2 WILD-TYPE" "OR5L2 WILD-TYPE" "OR5L2 WILD-TYPE" "OR5L2 WILD-TYPE" 
     TCGA-91-6836 
"OR5L2 WILD-TYPE" 
     TCGA-05-4249      TCGA-05-4250      TCGA-05-4382      TCGA-05-4384 
"OR5L2 WILD-TYPE"   "OR5L2 MUTATED" "OR5L2 WILD-TYPE" "OR5L2 WILD-TYPE" 
     TCGA-05-4390      TCGA-05-4396      TCGA-05-4397      TCGA-05-4398 
"OR5L2 WILD-TYPE" "OR5L2 WILD-TYPE" "OR5L2 WILD-TYPE" "OR5L2 WILD-TYPE" 
     TCGA-05-4402      TCGA-05-4405      TCGA-05-4415      TCGA-05-4417 
"OR5L2 WILD-TYPE" "OR5L2 WILD-TYPE"   "OR5L2 MUTATED" "OR5L2 WILD-TYPE" 
     TCGA-05-4418      TCGA-05-4420      TCGA-05-4424      TCGA-05-4426 
"OR5L2 WILD-TYPE" "OR5L2 WILD-TYPE" "OR5L2 WILD-TYPE" "OR5L2 WILD-TYPE" 
     TCGA-05-4427      TCGA-05-4430      TCGA-05-4432      TCGA-05-4433 
  "OR5L2 MUTATED" "OR5L2 WILD-TYPE" "OR5L2 WILD-TYPE" "OR5L2 WILD-TYPE" 
     TCGA-05-4434      TCGA-05-5420      TCGA-05-5423      TCGA-05-5425 
"OR5L2 WILD-TYPE" "OR5L2 WILD-TYPE" "OR5L2 WILD-TYPE" "OR5L2 WILD-TYPE" 
     TCGA-05-5429      TCGA-05-5715      TCGA-35-3615      TCGA-35-4122 
"OR5L2 WILD-TYPE" "OR5L2 WILD-TYPE" "OR5L2 WILD-TYPE" "OR5L2 WILD-TYPE" 
     TCGA-35-4123      TCGA-35-5375      TCGA-38-4625      TCGA-38-4626 
"OR5L2 WILD-TYPE" "OR5L2 WILD-TYPE" "OR5L2 WILD-TYPE" "OR5L2 WILD-TYPE" 
     TCGA-38-4627      TCGA-38-4628      TCGA-38-4629      TCGA-38-4630 
"OR5L2 WILD-TYPE" "OR5L2 WILD-TYPE" "OR5L2 WILD-TYPE" "OR5L2 WILD-TYPE" 
     TCGA-38-4631      TCGA-38-4632      TCGA-38-6178      TCGA-44-2655 
  "OR5L2 MUTATED" "OR5L2 WILD-TYPE" "OR5L2 WILD-TYPE" "OR5L2 WILD-TYPE" 
     TCGA-44-2656      TCGA-44-2657      TCGA-44-2659      TCGA-44-2661 
"OR5L2 WILD-TYPE" "OR5L2 WILD-TYPE" "OR5L2 WILD-TYPE" "OR5L2 WILD-TYPE" 
     TCGA-44-2662      TCGA-44-2665      TCGA-44-2666      TCGA-44-2668 
"OR5L2 WILD-TYPE" "OR5L2 WILD-TYPE" "OR5L2 WILD-TYPE" "OR5L2 WILD-TYPE" 
     TCGA-44-3396      TCGA-44-3398      TCGA-44-3918      TCGA-44-3919 
"OR5L2 WILD-TYPE"   "OR5L2 MUTATED" "OR5L2 WILD-TYPE" "OR5L2 WILD-TYPE" 
     TCGA-44-4112      TCGA-44-5643      TCGA-44-5645      TCGA-44-6144 
"OR5L2 WILD-TYPE" "OR5L2 WILD-TYPE" "OR5L2 WILD-TYPE"   "OR5L2 MUTATED" 
     TCGA-44-6145      TCGA-44-6146      TCGA-44-6147      TCGA-44-6148 
  "OR5L2 MUTATED" "OR5L2 WILD-TYPE" "OR5L2 WILD-TYPE" "OR5L2 WILD-TYPE" 
     TCGA-44-6774      TCGA-44-6775      TCGA-44-6776      TCGA-44-6777 
"OR5L2 WILD-TYPE" "OR5L2 WILD-TYPE" "OR5L2 WILD-TYPE" "OR5L2 WILD-TYPE" 
     TCGA-44-6778      TCGA-44-6779      TCGA-49-4486      TCGA-49-4487 
"OR5L2 WILD-TYPE" "OR5L2 WILD-TYPE" "OR5L2 WILD-TYPE" "OR5L2 WILD-TYPE" 
     TCGA-49-4488      TCGA-49-4490      TCGA-49-4494      TCGA-49-4501 
"OR5L2 WILD-TYPE" "OR5L2 WILD-TYPE" "OR5L2 WILD-TYPE" "OR5L2 WILD-TYPE" 
     TCGA-49-4505      TCGA-49-4506      TCGA-49-4507      TCGA-49-4510 
"OR5L2 WILD-TYPE" "OR5L2 WILD-TYPE" "OR5L2 WILD-TYPE" "OR5L2 WILD-TYPE" 
     TCGA-49-4512      TCGA-49-4514      TCGA-49-6742      TCGA-49-6743 
"OR5L2 WILD-TYPE"   "OR5L2 MUTATED"   "OR5L2 MUTATED"   "OR5L2 MUTATED" 
     TCGA-49-6744      TCGA-49-6745      TCGA-50-5044      TCGA-50-5045 
"OR5L2 WILD-TYPE" "OR5L2 WILD-TYPE" "OR5L2 WILD-TYPE" "OR5L2 WILD-TYPE" 
     TCGA-50-5049      TCGA-50-5051      TCGA-50-5055      TCGA-50-5066 
  "OR5L2 MUTATED" "OR5L2 WILD-TYPE" "OR5L2 WILD-TYPE" "OR5L2 WILD-TYPE" 
     TCGA-50-5068      TCGA-50-5072      TCGA-50-5930      TCGA-50-5931 
"OR5L2 WILD-TYPE" "OR5L2 WILD-TYPE" "OR5L2 WILD-TYPE" "OR5L2 WILD-TYPE" 
     TCGA-50-5932      TCGA-50-5933      TCGA-50-5935      TCGA-50-5936 
"OR5L2 WILD-TYPE" "OR5L2 WILD-TYPE" "OR5L2 WILD-TYPE" "OR5L2 WILD-TYPE" 
     TCGA-50-5939      TCGA-50-5941      TCGA-50-5942      TCGA-50-5944 
"OR5L2 WILD-TYPE" "OR5L2 WILD-TYPE" "OR5L2 WILD-TYPE" "OR5L2 WILD-TYPE" 
     TCGA-50-5946      TCGA-50-6590      TCGA-50-6591      TCGA-50-6592 
"OR5L2 WILD-TYPE" "OR5L2 WILD-TYPE" "OR5L2 WILD-TYPE" "OR5L2 WILD-TYPE" 
     TCGA-50-6593      TCGA-50-6594      TCGA-50-6595      TCGA-50-6597 
"OR5L2 WILD-TYPE" "OR5L2 WILD-TYPE" "OR5L2 WILD-TYPE" "OR5L2 WILD-TYPE" 
     TCGA-55-1592      TCGA-55-1594      TCGA-55-1595      TCGA-55-1596 
"OR5L2 WILD-TYPE" "OR5L2 WILD-TYPE" "OR5L2 WILD-TYPE" "OR5L2 WILD-TYPE" 
     TCGA-55-5899      TCGA-55-6543      TCGA-55-6642      TCGA-55-6712 
"OR5L2 WILD-TYPE" "OR5L2 WILD-TYPE" "OR5L2 WILD-TYPE" "OR5L2 WILD-TYPE" 
     TCGA-64-1676      TCGA-64-1677      TCGA-64-1678      TCGA-64-1680 
"OR5L2 WILD-TYPE" "OR5L2 WILD-TYPE" "OR5L2 WILD-TYPE" "OR5L2 WILD-TYPE" 
     TCGA-64-5774      TCGA-64-5775      TCGA-64-5778      TCGA-64-5779 
"OR5L2 WILD-TYPE" "OR5L2 WILD-TYPE" "OR5L2 WILD-TYPE" "OR5L2 WILD-TYPE" 
     TCGA-64-5781      TCGA-64-5815      TCGA-67-3770      TCGA-67-3771 
"OR5L2 WILD-TYPE" "OR5L2 WILD-TYPE" "OR5L2 WILD-TYPE" "OR5L2 WILD-TYPE" 
     TCGA-67-3772      TCGA-67-3773      TCGA-67-3774      TCGA-67-6215 
  "OR5L2 MUTATED" "OR5L2 WILD-TYPE" "OR5L2 WILD-TYPE" "OR5L2 WILD-TYPE" 
     TCGA-67-6216      TCGA-67-6217      TCGA-71-6725      TCGA-73-4658 
"OR5L2 WILD-TYPE" "OR5L2 WILD-TYPE" "OR5L2 WILD-TYPE" "OR5L2 WILD-TYPE" 
     TCGA-73-4659      TCGA-73-4662      TCGA-73-4666      TCGA-73-4668 
"OR5L2 WILD-TYPE" "OR5L2 WILD-TYPE" "OR5L2 WILD-TYPE" "OR5L2 WILD-TYPE" 
     TCGA-73-4670      TCGA-73-4675      TCGA-73-4676      TCGA-73-4677 
"OR5L2 WILD-TYPE" "OR5L2 WILD-TYPE" "OR5L2 WILD-TYPE" "OR5L2 WILD-TYPE" 
     TCGA-91-6828      TCGA-91-6829      TCGA-91-6831      TCGA-91-6835 
"OR5L2 WILD-TYPE" "OR5L2 WILD-TYPE" "OR5L2 WILD-TYPE" "OR5L2 WILD-TYPE" 
     TCGA-91-6836 
"OR5L2 WILD-TYPE" 
     TCGA-05-4249      TCGA-05-4250      TCGA-05-4382      TCGA-05-4384 
"OR5L2 WILD-TYPE"   "OR5L2 MUTATED" "OR5L2 WILD-TYPE" "OR5L2 WILD-TYPE" 
     TCGA-05-4390      TCGA-05-4396      TCGA-05-4397      TCGA-05-4398 
"OR5L2 WILD-TYPE" "OR5L2 WILD-TYPE" "OR5L2 WILD-TYPE" "OR5L2 WILD-TYPE" 
     TCGA-05-4402      TCGA-05-4405      TCGA-05-4415      TCGA-05-4417 
"OR5L2 WILD-TYPE" "OR5L2 WILD-TYPE"   "OR5L2 MUTATED" "OR5L2 WILD-TYPE" 
     TCGA-05-4418      TCGA-05-4420      TCGA-05-4424      TCGA-05-4426 
"OR5L2 WILD-TYPE" "OR5L2 WILD-TYPE" "OR5L2 WILD-TYPE" "OR5L2 WILD-TYPE" 
     TCGA-05-4427      TCGA-05-4430      TCGA-05-4432      TCGA-05-4433 
  "OR5L2 MUTATED" "OR5L2 WILD-TYPE" "OR5L2 WILD-TYPE" "OR5L2 WILD-TYPE" 
     TCGA-05-4434      TCGA-05-5420      TCGA-05-5423      TCGA-05-5425 
"OR5L2 WILD-TYPE" "OR5L2 WILD-TYPE" "OR5L2 WILD-TYPE" "OR5L2 WILD-TYPE" 
     TCGA-05-5429      TCGA-05-5715      TCGA-35-3615      TCGA-35-4122 
"OR5L2 WILD-TYPE" "OR5L2 WILD-TYPE" "OR5L2 WILD-TYPE" "OR5L2 WILD-TYPE" 
     TCGA-35-4123      TCGA-35-5375      TCGA-38-4625      TCGA-38-4626 
"OR5L2 WILD-TYPE" "OR5L2 WILD-TYPE" "OR5L2 WILD-TYPE" "OR5L2 WILD-TYPE" 
     TCGA-38-4627      TCGA-38-4628      TCGA-38-4629      TCGA-38-4630 
"OR5L2 WILD-TYPE" "OR5L2 WILD-TYPE" "OR5L2 WILD-TYPE" "OR5L2 WILD-TYPE" 
     TCGA-38-4631      TCGA-38-4632      TCGA-38-6178      TCGA-44-2655 
  "OR5L2 MUTATED" "OR5L2 WILD-TYPE" "OR5L2 WILD-TYPE" "OR5L2 WILD-TYPE" 
     TCGA-44-2656      TCGA-44-2657      TCGA-44-2659      TCGA-44-2661 
"OR5L2 WILD-TYPE" "OR5L2 WILD-TYPE" "OR5L2 WILD-TYPE" "OR5L2 WILD-TYPE" 
     TCGA-44-2662      TCGA-44-2665      TCGA-44-2666      TCGA-44-2668 
"OR5L2 WILD-TYPE" "OR5L2 WILD-TYPE" "OR5L2 WILD-TYPE" "OR5L2 WILD-TYPE" 
     TCGA-44-3396      TCGA-44-3398      TCGA-44-3918      TCGA-44-3919 
"OR5L2 WILD-TYPE"   "OR5L2 MUTATED" "OR5L2 WILD-TYPE" "OR5L2 WILD-TYPE" 
     TCGA-44-4112      TCGA-44-5643      TCGA-44-5645      TCGA-44-6144 
"OR5L2 WILD-TYPE" "OR5L2 WILD-TYPE" "OR5L2 WILD-TYPE"   "OR5L2 MUTATED" 
     TCGA-44-6145      TCGA-44-6146      TCGA-44-6147      TCGA-44-6148 
  "OR5L2 MUTATED" "OR5L2 WILD-TYPE" "OR5L2 WILD-TYPE" "OR5L2 WILD-TYPE" 
     TCGA-44-6774      TCGA-44-6775      TCGA-44-6776      TCGA-44-6777 
"OR5L2 WILD-TYPE" "OR5L2 WILD-TYPE" "OR5L2 WILD-TYPE" "OR5L2 WILD-TYPE" 
     TCGA-44-6778      TCGA-44-6779      TCGA-49-4486      TCGA-49-4487 
"OR5L2 WILD-TYPE" "OR5L2 WILD-TYPE" "OR5L2 WILD-TYPE" "OR5L2 WILD-TYPE" 
     TCGA-49-4488      TCGA-49-4490      TCGA-49-4494      TCGA-49-4501 
"OR5L2 WILD-TYPE" "OR5L2 WILD-TYPE" "OR5L2 WILD-TYPE" "OR5L2 WILD-TYPE" 
     TCGA-49-4505      TCGA-49-4506      TCGA-49-4507      TCGA-49-4510 
"OR5L2 WILD-TYPE" "OR5L2 WILD-TYPE" "OR5L2 WILD-TYPE" "OR5L2 WILD-TYPE" 
     TCGA-49-4512      TCGA-49-4514      TCGA-49-6742      TCGA-49-6743 
"OR5L2 WILD-TYPE"   "OR5L2 MUTATED"   "OR5L2 MUTATED"   "OR5L2 MUTATED" 
     TCGA-49-6744      TCGA-49-6745      TCGA-50-5044      TCGA-50-5045 
"OR5L2 WILD-TYPE" "OR5L2 WILD-TYPE" "OR5L2 WILD-TYPE" "OR5L2 WILD-TYPE" 
     TCGA-50-5049      TCGA-50-5051      TCGA-50-5055      TCGA-50-5066 
  "OR5L2 MUTATED" "OR5L2 WILD-TYPE" "OR5L2 WILD-TYPE" "OR5L2 WILD-TYPE" 
     TCGA-50-5068      TCGA-50-5072      TCGA-50-5930      TCGA-50-5931 
"OR5L2 WILD-TYPE" "OR5L2 WILD-TYPE" "OR5L2 WILD-TYPE" "OR5L2 WILD-TYPE" 
     TCGA-50-5932      TCGA-50-5933      TCGA-50-5935      TCGA-50-5936 
"OR5L2 WILD-TYPE" "OR5L2 WILD-TYPE" "OR5L2 WILD-TYPE" "OR5L2 WILD-TYPE" 
     TCGA-50-5939      TCGA-50-5941      TCGA-50-5942      TCGA-50-5944 
"OR5L2 WILD-TYPE" "OR5L2 WILD-TYPE" "OR5L2 WILD-TYPE" "OR5L2 WILD-TYPE" 
     TCGA-50-5946      TCGA-50-6590      TCGA-50-6591      TCGA-50-6592 
"OR5L2 WILD-TYPE" "OR5L2 WILD-TYPE" "OR5L2 WILD-TYPE" "OR5L2 WILD-TYPE" 
     TCGA-50-6593      TCGA-50-6594      TCGA-50-6595      TCGA-50-6597 
"OR5L2 WILD-TYPE" "OR5L2 WILD-TYPE" "OR5L2 WILD-TYPE" "OR5L2 WILD-TYPE" 
     TCGA-55-1592      TCGA-55-1594      TCGA-55-1595      TCGA-55-1596 
"OR5L2 WILD-TYPE" "OR5L2 WILD-TYPE" "OR5L2 WILD-TYPE" "OR5L2 WILD-TYPE" 
     TCGA-55-5899      TCGA-55-6543      TCGA-55-6642      TCGA-55-6712 
"OR5L2 WILD-TYPE" "OR5L2 WILD-TYPE" "OR5L2 WILD-TYPE" "OR5L2 WILD-TYPE" 
     TCGA-64-1676      TCGA-64-1677      TCGA-64-1678      TCGA-64-1680 
"OR5L2 WILD-TYPE" "OR5L2 WILD-TYPE" "OR5L2 WILD-TYPE" "OR5L2 WILD-TYPE" 
     TCGA-64-5774      TCGA-64-5775      TCGA-64-5778      TCGA-64-5779 
"OR5L2 WILD-TYPE" "OR5L2 WILD-TYPE" "OR5L2 WILD-TYPE" "OR5L2 WILD-TYPE" 
     TCGA-64-5781      TCGA-64-5815      TCGA-67-3770      TCGA-67-3771 
"OR5L2 WILD-TYPE" "OR5L2 WILD-TYPE" "OR5L2 WILD-TYPE" "OR5L2 WILD-TYPE" 
     TCGA-67-3772      TCGA-67-3773      TCGA-67-3774      TCGA-67-6215 
  "OR5L2 MUTATED" "OR5L2 WILD-TYPE" "OR5L2 WILD-TYPE" "OR5L2 WILD-TYPE" 
     TCGA-67-6216      TCGA-67-6217      TCGA-71-6725      TCGA-73-4658 
"OR5L2 WILD-TYPE" "OR5L2 WILD-TYPE" "OR5L2 WILD-TYPE" "OR5L2 WILD-TYPE" 
     TCGA-73-4659      TCGA-73-4662      TCGA-73-4666      TCGA-73-4668 
"OR5L2 WILD-TYPE" "OR5L2 WILD-TYPE" "OR5L2 WILD-TYPE" "OR5L2 WILD-TYPE" 
     TCGA-73-4670      TCGA-73-4675      TCGA-73-4676      TCGA-73-4677 
"OR5L2 WILD-TYPE" "OR5L2 WILD-TYPE" "OR5L2 WILD-TYPE" "OR5L2 WILD-TYPE" 
     TCGA-91-6828      TCGA-91-6829      TCGA-91-6831      TCGA-91-6835 
"OR5L2 WILD-TYPE" "OR5L2 WILD-TYPE" "OR5L2 WILD-TYPE" "OR5L2 WILD-TYPE" 
     TCGA-91-6836 
"OR5L2 WILD-TYPE" 
[1] "hr=" "1.1"
D284V2, continuous
D284V3, binary
[1] "tbl2"
                 cls
clus              [,1] [,2]
  OR5L2 MUTATED      9    4
  OR5L2 WILD-TYPE   84   75
        clus
vv       OR5L2 MUTATED OR5L2 WILD-TYPE
  FEMALE             9              84
  MALE               4              75
D284V4, continuous
D284V5, multiclass
D284V6, multiclass
    clus
vv   OR5L2 MUTATED OR5L2 WILD-TYPE
  T1             5              36
  T2             5             103
  T3             2              12
  T4             1               7
D284V7, multiclass
       clus
vv      OR5L2 MUTATED OR5L2 WILD-TYPE
  N0                7              88
  N1                3              34
  N2+N3             3              32
D284V8, multiclass
    clus
vv   OR5L2 MUTATED OR5L2 WILD-TYPE
  M0            11             126
  M1             0               9
  MX             2              20
D284V9, multiclass
     clus
vv    OR5L2 MUTATED OR5L2 WILD-TYPE
  I               7              81
  II              2              31
  III             4              35
  IV              0               9
D284V10, binary
[1] "tbl2"
                 cls
clus              [,1] [,2]
  OR5L2 MUTATED      1   12
  OR5L2 WILD-TYPE   15  144
     clus
vv    OR5L2 MUTATED OR5L2 WILD-TYPE
  NO              1              15
  YES            12             144
D284V11, continuous
D284V12, continuous
D284V13, multiclass
                                             clus
vv                                            OR5L2 MUTATED OR5L2 WILD-TYPE
  CURRENT REFORMED SMOKER FOR < OR = 15 YEARS             8              54
  CURRENT REFORMED SMOKER FOR > 15 YEARS                  2              44
  CURRENT SMOKER                                          1              27
  LIFELONG NON-SMOKER                                     1              23
D284V14, continuous

Clustering(285) Variable = CHRND MUTATION ANALYSIS
D285V1, survival
                 sevent
clus2              0  1
  CHRND MUTATED    5  2
  CHRND WILD-TYPE 94 48
  CHRND MUTATED CHRND WILD-TYPE 
              7             142 
  CHRND MUTATED CHRND WILD-TYPE 
              2              48 
$`CHRND MUTATED`
TCGA-05-4418 TCGA-05-4420 TCGA-05-4432 TCGA-38-4632 TCGA-44-3918 TCGA-50-5049 
        8.98        29.95        25.02        44.61         6.44        48.82 
TCGA-64-5778 
       30.44 

$`CHRND WILD-TYPE`
TCGA-05-4249 TCGA-05-4250 TCGA-05-4382 TCGA-05-4384 TCGA-05-4390 TCGA-05-4396 
       38.07         3.98        19.92        14.01        37.02         9.96 
TCGA-05-4397 TCGA-05-4398 TCGA-05-4402 TCGA-05-4405 TCGA-05-4415 TCGA-05-4417 
       24.03        47.05         8.02        20.05         2.96        14.93 
TCGA-05-4424 TCGA-05-4426 TCGA-05-4427 TCGA-05-4430 TCGA-05-4433 TCGA-05-4434 
       30.02        26.01        26.01        25.02        24.00        15.02 
TCGA-05-5420 TCGA-05-5423 TCGA-05-5425 TCGA-05-5429 TCGA-05-5715 TCGA-35-3615 
        1.02         4.96         2.96         0.99         2.04         0.46 
TCGA-35-4122 TCGA-35-4123 TCGA-35-5375 TCGA-38-4625 TCGA-38-4626 TCGA-38-4627 
        7.36         5.95         8.68        47.61        85.32        37.71 
TCGA-38-4628 TCGA-38-4629 TCGA-38-4630 TCGA-38-4631 TCGA-38-6178 TCGA-44-2655 
       49.02        28.37        35.28        11.64         5.19        18.87 
TCGA-44-2656 TCGA-44-2657 TCGA-44-2659 TCGA-44-2661 TCGA-44-2662 TCGA-44-2665 
       19.10        13.15        17.39         3.39        15.78        13.15 
TCGA-44-2666 TCGA-44-2668 TCGA-44-3396 TCGA-44-3398 TCGA-44-3919 TCGA-44-4112 
        3.19         8.09        10.22         8.32         6.21         4.60 
TCGA-44-5643 TCGA-44-5645 TCGA-44-6144 TCGA-44-6145 TCGA-44-6146 TCGA-44-6147 
        3.48         6.84         0.30         3.35         9.93         7.76 
TCGA-44-6148 TCGA-44-6774 TCGA-44-6775 TCGA-44-6776 TCGA-44-6777 TCGA-44-6778 
        3.12         5.42         2.70        63.72        32.45        36.49 
TCGA-44-6779 TCGA-49-4486 TCGA-49-4487 TCGA-49-4488 TCGA-49-4490 TCGA-49-4494 
       16.41        76.21        28.11        28.57        12.66        35.54 
TCGA-49-4501 TCGA-49-4505 TCGA-49-4506 TCGA-49-4507 TCGA-49-4510 TCGA-49-4512 
       46.72        14.07        32.84         8.81        29.46        29.75 
TCGA-49-4514 TCGA-49-6742 TCGA-49-6743 TCGA-49-6744 TCGA-49-6745 TCGA-50-5044 
       43.20        15.02        12.13        12.99         4.93        20.48 
TCGA-50-5045 TCGA-50-5051 TCGA-50-5055 TCGA-50-5066 TCGA-50-5068 TCGA-50-5072 
       71.47        14.96        25.81         9.76        49.28         8.05 
TCGA-50-5930 TCGA-50-5931 TCGA-50-5932 TCGA-50-5933 TCGA-50-5935 TCGA-50-5936 
        9.27         8.78        35.87        77.88        21.47         8.45 
TCGA-50-5939 TCGA-50-5941 TCGA-50-5942 TCGA-50-5944 TCGA-50-5946 TCGA-50-6590 
       15.12         9.37         4.44        12.26        11.47        42.31 
TCGA-50-6591 TCGA-50-6592 TCGA-50-6593 TCGA-50-6594 TCGA-50-6595 TCGA-50-6597 
        3.88        25.51        11.05        12.16         6.21        33.37 
TCGA-55-1592 TCGA-55-1594 TCGA-55-1595 TCGA-55-1596 TCGA-55-5899 TCGA-55-6543 
       23.05        38.73        48.62        45.17         2.86         0.07 
TCGA-55-6642 TCGA-55-6712 TCGA-64-1676 TCGA-64-1677 TCGA-64-1678 TCGA-64-1680 
       32.61         0.79        56.81        20.65        39.09        37.02 
TCGA-64-5774 TCGA-64-5775 TCGA-64-5779 TCGA-64-5781 TCGA-64-5815 TCGA-67-3770 
       83.84         0.10        16.67        39.52         7.33         0.99 
TCGA-67-3771 TCGA-67-3772 TCGA-67-3773 TCGA-67-3774 TCGA-67-6215 TCGA-67-6216 
        1.97         0.59         2.04         0.59         0.89         0.69 
TCGA-67-6217 TCGA-71-6725 TCGA-73-4658 TCGA-73-4659 TCGA-73-4662 TCGA-73-4666 
       13.87         2.01        52.57        23.38        29.95        20.28 
TCGA-73-4668 TCGA-73-4670 TCGA-73-4675 TCGA-73-4676 TCGA-73-4677 TCGA-91-6828 
       15.35         0.46         1.32         4.01         1.25         1.22 
TCGA-91-6829 TCGA-91-6831 TCGA-91-6835 TCGA-91-6836 
       41.33         1.28         1.15         0.36 

  CHRND MUTATED CHRND WILD-TYPE 
           6.44            0.07 
  CHRND MUTATED CHRND WILD-TYPE 
          48.82           85.32 
  CHRND MUTATED CHRND WILD-TYPE 
          29.95           13.15 
[1] "6.4 - 48.8 (29.9)" "0.1 - 85.3 (13.2)"
     TCGA-05-4249      TCGA-05-4250      TCGA-05-4382      TCGA-05-4384 
"CHRND WILD-TYPE" "CHRND WILD-TYPE" "CHRND WILD-TYPE" "CHRND WILD-TYPE" 
     TCGA-05-4390      TCGA-05-4396      TCGA-05-4397      TCGA-05-4398 
"CHRND WILD-TYPE" "CHRND WILD-TYPE" "CHRND WILD-TYPE" "CHRND WILD-TYPE" 
     TCGA-05-4402      TCGA-05-4405      TCGA-05-4415      TCGA-05-4417 
"CHRND WILD-TYPE" "CHRND WILD-TYPE" "CHRND WILD-TYPE" "CHRND WILD-TYPE" 
     TCGA-05-4418      TCGA-05-4420      TCGA-05-4424      TCGA-05-4426 
  "CHRND MUTATED"   "CHRND MUTATED" "CHRND WILD-TYPE" "CHRND WILD-TYPE" 
     TCGA-05-4427      TCGA-05-4430      TCGA-05-4432      TCGA-05-4433 
"CHRND WILD-TYPE" "CHRND WILD-TYPE"   "CHRND MUTATED" "CHRND WILD-TYPE" 
     TCGA-05-4434      TCGA-05-5420      TCGA-05-5423      TCGA-05-5425 
"CHRND WILD-TYPE" "CHRND WILD-TYPE" "CHRND WILD-TYPE" "CHRND WILD-TYPE" 
     TCGA-05-5429      TCGA-05-5715      TCGA-35-3615      TCGA-35-4122 
"CHRND WILD-TYPE" "CHRND WILD-TYPE" "CHRND WILD-TYPE" "CHRND WILD-TYPE" 
     TCGA-35-4123      TCGA-35-5375      TCGA-38-4625      TCGA-38-4626 
"CHRND WILD-TYPE" "CHRND WILD-TYPE" "CHRND WILD-TYPE" "CHRND WILD-TYPE" 
     TCGA-38-4627      TCGA-38-4628      TCGA-38-4629      TCGA-38-4630 
"CHRND WILD-TYPE" "CHRND WILD-TYPE" "CHRND WILD-TYPE" "CHRND WILD-TYPE" 
     TCGA-38-4631      TCGA-38-4632      TCGA-38-6178      TCGA-44-2655 
"CHRND WILD-TYPE"   "CHRND MUTATED" "CHRND WILD-TYPE" "CHRND WILD-TYPE" 
     TCGA-44-2656      TCGA-44-2657      TCGA-44-2659      TCGA-44-2661 
"CHRND WILD-TYPE" "CHRND WILD-TYPE" "CHRND WILD-TYPE" "CHRND WILD-TYPE" 
     TCGA-44-2662      TCGA-44-2665      TCGA-44-2666      TCGA-44-2668 
"CHRND WILD-TYPE" "CHRND WILD-TYPE" "CHRND WILD-TYPE" "CHRND WILD-TYPE" 
     TCGA-44-3396      TCGA-44-3398      TCGA-44-3918      TCGA-44-3919 
"CHRND WILD-TYPE" "CHRND WILD-TYPE"   "CHRND MUTATED" "CHRND WILD-TYPE" 
     TCGA-44-4112      TCGA-44-5643      TCGA-44-5645      TCGA-44-6144 
"CHRND WILD-TYPE" "CHRND WILD-TYPE" "CHRND WILD-TYPE" "CHRND WILD-TYPE" 
     TCGA-44-6145      TCGA-44-6146      TCGA-44-6147      TCGA-44-6148 
"CHRND WILD-TYPE" "CHRND WILD-TYPE" "CHRND WILD-TYPE" "CHRND WILD-TYPE" 
     TCGA-44-6774      TCGA-44-6775      TCGA-44-6776      TCGA-44-6777 
"CHRND WILD-TYPE" "CHRND WILD-TYPE" "CHRND WILD-TYPE" "CHRND WILD-TYPE" 
     TCGA-44-6778      TCGA-44-6779      TCGA-49-4486      TCGA-49-4487 
"CHRND WILD-TYPE" "CHRND WILD-TYPE" "CHRND WILD-TYPE" "CHRND WILD-TYPE" 
     TCGA-49-4488      TCGA-49-4490      TCGA-49-4494      TCGA-49-4501 
"CHRND WILD-TYPE" "CHRND WILD-TYPE" "CHRND WILD-TYPE" "CHRND WILD-TYPE" 
     TCGA-49-4505      TCGA-49-4506      TCGA-49-4507      TCGA-49-4510 
"CHRND WILD-TYPE" "CHRND WILD-TYPE" "CHRND WILD-TYPE" "CHRND WILD-TYPE" 
     TCGA-49-4512      TCGA-49-4514      TCGA-49-6742      TCGA-49-6743 
"CHRND WILD-TYPE" "CHRND WILD-TYPE" "CHRND WILD-TYPE" "CHRND WILD-TYPE" 
     TCGA-49-6744      TCGA-49-6745      TCGA-50-5044      TCGA-50-5045 
"CHRND WILD-TYPE" "CHRND WILD-TYPE" "CHRND WILD-TYPE" "CHRND WILD-TYPE" 
     TCGA-50-5049      TCGA-50-5051      TCGA-50-5055      TCGA-50-5066 
  "CHRND MUTATED" "CHRND WILD-TYPE" "CHRND WILD-TYPE" "CHRND WILD-TYPE" 
     TCGA-50-5068      TCGA-50-5072      TCGA-50-5930      TCGA-50-5931 
"CHRND WILD-TYPE" "CHRND WILD-TYPE" "CHRND WILD-TYPE" "CHRND WILD-TYPE" 
     TCGA-50-5932      TCGA-50-5933      TCGA-50-5935      TCGA-50-5936 
"CHRND WILD-TYPE" "CHRND WILD-TYPE" "CHRND WILD-TYPE" "CHRND WILD-TYPE" 
     TCGA-50-5939      TCGA-50-5941      TCGA-50-5942      TCGA-50-5944 
"CHRND WILD-TYPE" "CHRND WILD-TYPE" "CHRND WILD-TYPE" "CHRND WILD-TYPE" 
     TCGA-50-5946      TCGA-50-6590      TCGA-50-6591      TCGA-50-6592 
"CHRND WILD-TYPE" "CHRND WILD-TYPE" "CHRND WILD-TYPE" "CHRND WILD-TYPE" 
     TCGA-50-6593      TCGA-50-6594      TCGA-50-6595      TCGA-50-6597 
"CHRND WILD-TYPE" "CHRND WILD-TYPE" "CHRND WILD-TYPE" "CHRND WILD-TYPE" 
     TCGA-55-1592      TCGA-55-1594      TCGA-55-1595      TCGA-55-1596 
"CHRND WILD-TYPE" "CHRND WILD-TYPE" "CHRND WILD-TYPE" "CHRND WILD-TYPE" 
     TCGA-55-5899      TCGA-55-6543      TCGA-55-6642      TCGA-55-6712 
"CHRND WILD-TYPE" "CHRND WILD-TYPE" "CHRND WILD-TYPE" "CHRND WILD-TYPE" 
     TCGA-64-1676      TCGA-64-1677      TCGA-64-1678      TCGA-64-1680 
"CHRND WILD-TYPE" "CHRND WILD-TYPE" "CHRND WILD-TYPE" "CHRND WILD-TYPE" 
     TCGA-64-5774      TCGA-64-5775      TCGA-64-5778      TCGA-64-5779 
"CHRND WILD-TYPE" "CHRND WILD-TYPE"   "CHRND MUTATED" "CHRND WILD-TYPE" 
     TCGA-64-5781      TCGA-64-5815      TCGA-67-3770      TCGA-67-3771 
"CHRND WILD-TYPE" "CHRND WILD-TYPE" "CHRND WILD-TYPE" "CHRND WILD-TYPE" 
     TCGA-67-3772      TCGA-67-3773      TCGA-67-3774      TCGA-67-6215 
"CHRND WILD-TYPE" "CHRND WILD-TYPE" "CHRND WILD-TYPE" "CHRND WILD-TYPE" 
     TCGA-67-6216      TCGA-67-6217      TCGA-71-6725      TCGA-73-4658 
"CHRND WILD-TYPE" "CHRND WILD-TYPE" "CHRND WILD-TYPE" "CHRND WILD-TYPE" 
     TCGA-73-4659      TCGA-73-4662      TCGA-73-4666      TCGA-73-4668 
"CHRND WILD-TYPE" "CHRND WILD-TYPE" "CHRND WILD-TYPE" "CHRND WILD-TYPE" 
     TCGA-73-4670      TCGA-73-4675      TCGA-73-4676      TCGA-73-4677 
"CHRND WILD-TYPE" "CHRND WILD-TYPE" "CHRND WILD-TYPE" "CHRND WILD-TYPE" 
     TCGA-91-6828      TCGA-91-6829      TCGA-91-6831      TCGA-91-6835 
"CHRND WILD-TYPE" "CHRND WILD-TYPE" "CHRND WILD-TYPE" "CHRND WILD-TYPE" 
     TCGA-91-6836 
"CHRND WILD-TYPE" 
     TCGA-05-4249      TCGA-05-4250      TCGA-05-4382      TCGA-05-4384 
"CHRND WILD-TYPE" "CHRND WILD-TYPE" "CHRND WILD-TYPE" "CHRND WILD-TYPE" 
     TCGA-05-4390      TCGA-05-4396      TCGA-05-4397      TCGA-05-4398 
"CHRND WILD-TYPE" "CHRND WILD-TYPE" "CHRND WILD-TYPE" "CHRND WILD-TYPE" 
     TCGA-05-4402      TCGA-05-4405      TCGA-05-4415      TCGA-05-4417 
"CHRND WILD-TYPE" "CHRND WILD-TYPE" "CHRND WILD-TYPE" "CHRND WILD-TYPE" 
     TCGA-05-4418      TCGA-05-4420      TCGA-05-4424      TCGA-05-4426 
  "CHRND MUTATED"   "CHRND MUTATED" "CHRND WILD-TYPE" "CHRND WILD-TYPE" 
     TCGA-05-4427      TCGA-05-4430      TCGA-05-4432      TCGA-05-4433 
"CHRND WILD-TYPE" "CHRND WILD-TYPE"   "CHRND MUTATED" "CHRND WILD-TYPE" 
     TCGA-05-4434      TCGA-05-5420      TCGA-05-5423      TCGA-05-5425 
"CHRND WILD-TYPE" "CHRND WILD-TYPE" "CHRND WILD-TYPE" "CHRND WILD-TYPE" 
     TCGA-05-5429      TCGA-05-5715      TCGA-35-3615      TCGA-35-4122 
"CHRND WILD-TYPE" "CHRND WILD-TYPE" "CHRND WILD-TYPE" "CHRND WILD-TYPE" 
     TCGA-35-4123      TCGA-35-5375      TCGA-38-4625      TCGA-38-4626 
"CHRND WILD-TYPE" "CHRND WILD-TYPE" "CHRND WILD-TYPE" "CHRND WILD-TYPE" 
     TCGA-38-4627      TCGA-38-4628      TCGA-38-4629      TCGA-38-4630 
"CHRND WILD-TYPE" "CHRND WILD-TYPE" "CHRND WILD-TYPE" "CHRND WILD-TYPE" 
     TCGA-38-4631      TCGA-38-4632      TCGA-38-6178      TCGA-44-2655 
"CHRND WILD-TYPE"   "CHRND MUTATED" "CHRND WILD-TYPE" "CHRND WILD-TYPE" 
     TCGA-44-2656      TCGA-44-2657      TCGA-44-2659      TCGA-44-2661 
"CHRND WILD-TYPE" "CHRND WILD-TYPE" "CHRND WILD-TYPE" "CHRND WILD-TYPE" 
     TCGA-44-2662      TCGA-44-2665      TCGA-44-2666      TCGA-44-2668 
"CHRND WILD-TYPE" "CHRND WILD-TYPE" "CHRND WILD-TYPE" "CHRND WILD-TYPE" 
     TCGA-44-3396      TCGA-44-3398      TCGA-44-3918      TCGA-44-3919 
"CHRND WILD-TYPE" "CHRND WILD-TYPE"   "CHRND MUTATED" "CHRND WILD-TYPE" 
     TCGA-44-4112      TCGA-44-5643      TCGA-44-5645      TCGA-44-6144 
"CHRND WILD-TYPE" "CHRND WILD-TYPE" "CHRND WILD-TYPE" "CHRND WILD-TYPE" 
     TCGA-44-6145      TCGA-44-6146      TCGA-44-6147      TCGA-44-6148 
"CHRND WILD-TYPE" "CHRND WILD-TYPE" "CHRND WILD-TYPE" "CHRND WILD-TYPE" 
     TCGA-44-6774      TCGA-44-6775      TCGA-44-6776      TCGA-44-6777 
"CHRND WILD-TYPE" "CHRND WILD-TYPE" "CHRND WILD-TYPE" "CHRND WILD-TYPE" 
     TCGA-44-6778      TCGA-44-6779      TCGA-49-4486      TCGA-49-4487 
"CHRND WILD-TYPE" "CHRND WILD-TYPE" "CHRND WILD-TYPE" "CHRND WILD-TYPE" 
     TCGA-49-4488      TCGA-49-4490      TCGA-49-4494      TCGA-49-4501 
"CHRND WILD-TYPE" "CHRND WILD-TYPE" "CHRND WILD-TYPE" "CHRND WILD-TYPE" 
     TCGA-49-4505      TCGA-49-4506      TCGA-49-4507      TCGA-49-4510 
"CHRND WILD-TYPE" "CHRND WILD-TYPE" "CHRND WILD-TYPE" "CHRND WILD-TYPE" 
     TCGA-49-4512      TCGA-49-4514      TCGA-49-6742      TCGA-49-6743 
"CHRND WILD-TYPE" "CHRND WILD-TYPE" "CHRND WILD-TYPE" "CHRND WILD-TYPE" 
     TCGA-49-6744      TCGA-49-6745      TCGA-50-5044      TCGA-50-5045 
"CHRND WILD-TYPE" "CHRND WILD-TYPE" "CHRND WILD-TYPE" "CHRND WILD-TYPE" 
     TCGA-50-5049      TCGA-50-5051      TCGA-50-5055      TCGA-50-5066 
  "CHRND MUTATED" "CHRND WILD-TYPE" "CHRND WILD-TYPE" "CHRND WILD-TYPE" 
     TCGA-50-5068      TCGA-50-5072      TCGA-50-5930      TCGA-50-5931 
"CHRND WILD-TYPE" "CHRND WILD-TYPE" "CHRND WILD-TYPE" "CHRND WILD-TYPE" 
     TCGA-50-5932      TCGA-50-5933      TCGA-50-5935      TCGA-50-5936 
"CHRND WILD-TYPE" "CHRND WILD-TYPE" "CHRND WILD-TYPE" "CHRND WILD-TYPE" 
     TCGA-50-5939      TCGA-50-5941      TCGA-50-5942      TCGA-50-5944 
"CHRND WILD-TYPE" "CHRND WILD-TYPE" "CHRND WILD-TYPE" "CHRND WILD-TYPE" 
     TCGA-50-5946      TCGA-50-6590      TCGA-50-6591      TCGA-50-6592 
"CHRND WILD-TYPE" "CHRND WILD-TYPE" "CHRND WILD-TYPE" "CHRND WILD-TYPE" 
     TCGA-50-6593      TCGA-50-6594      TCGA-50-6595      TCGA-50-6597 
"CHRND WILD-TYPE" "CHRND WILD-TYPE" "CHRND WILD-TYPE" "CHRND WILD-TYPE" 
     TCGA-55-1592      TCGA-55-1594      TCGA-55-1595      TCGA-55-1596 
"CHRND WILD-TYPE" "CHRND WILD-TYPE" "CHRND WILD-TYPE" "CHRND WILD-TYPE" 
     TCGA-55-5899      TCGA-55-6543      TCGA-55-6642      TCGA-55-6712 
"CHRND WILD-TYPE" "CHRND WILD-TYPE" "CHRND WILD-TYPE" "CHRND WILD-TYPE" 
     TCGA-64-1676      TCGA-64-1677      TCGA-64-1678      TCGA-64-1680 
"CHRND WILD-TYPE" "CHRND WILD-TYPE" "CHRND WILD-TYPE" "CHRND WILD-TYPE" 
     TCGA-64-5774      TCGA-64-5775      TCGA-64-5778      TCGA-64-5779 
"CHRND WILD-TYPE" "CHRND WILD-TYPE"   "CHRND MUTATED" "CHRND WILD-TYPE" 
     TCGA-64-5781      TCGA-64-5815      TCGA-67-3770      TCGA-67-3771 
"CHRND WILD-TYPE" "CHRND WILD-TYPE" "CHRND WILD-TYPE" "CHRND WILD-TYPE" 
     TCGA-67-3772      TCGA-67-3773      TCGA-67-3774      TCGA-67-6215 
"CHRND WILD-TYPE" "CHRND WILD-TYPE" "CHRND WILD-TYPE" "CHRND WILD-TYPE" 
     TCGA-67-6216      TCGA-67-6217      TCGA-71-6725      TCGA-73-4658 
"CHRND WILD-TYPE" "CHRND WILD-TYPE" "CHRND WILD-TYPE" "CHRND WILD-TYPE" 
     TCGA-73-4659      TCGA-73-4662      TCGA-73-4666      TCGA-73-4668 
"CHRND WILD-TYPE" "CHRND WILD-TYPE" "CHRND WILD-TYPE" "CHRND WILD-TYPE" 
     TCGA-73-4670      TCGA-73-4675      TCGA-73-4676      TCGA-73-4677 
"CHRND WILD-TYPE" "CHRND WILD-TYPE" "CHRND WILD-TYPE" "CHRND WILD-TYPE" 
     TCGA-91-6828      TCGA-91-6829      TCGA-91-6831      TCGA-91-6835 
"CHRND WILD-TYPE" "CHRND WILD-TYPE" "CHRND WILD-TYPE" "CHRND WILD-TYPE" 
     TCGA-91-6836 
"CHRND WILD-TYPE" 
     TCGA-05-4249      TCGA-05-4250      TCGA-05-4382      TCGA-05-4384 
"CHRND WILD-TYPE" "CHRND WILD-TYPE" "CHRND WILD-TYPE" "CHRND WILD-TYPE" 
     TCGA-05-4390      TCGA-05-4396      TCGA-05-4397      TCGA-05-4398 
"CHRND WILD-TYPE" "CHRND WILD-TYPE" "CHRND WILD-TYPE" "CHRND WILD-TYPE" 
     TCGA-05-4402      TCGA-05-4405      TCGA-05-4415      TCGA-05-4417 
"CHRND WILD-TYPE" "CHRND WILD-TYPE" "CHRND WILD-TYPE" "CHRND WILD-TYPE" 
     TCGA-05-4418      TCGA-05-4420      TCGA-05-4424      TCGA-05-4426 
  "CHRND MUTATED"   "CHRND MUTATED" "CHRND WILD-TYPE" "CHRND WILD-TYPE" 
     TCGA-05-4427      TCGA-05-4430      TCGA-05-4432      TCGA-05-4433 
"CHRND WILD-TYPE" "CHRND WILD-TYPE"   "CHRND MUTATED" "CHRND WILD-TYPE" 
     TCGA-05-4434      TCGA-05-5420      TCGA-05-5423      TCGA-05-5425 
"CHRND WILD-TYPE" "CHRND WILD-TYPE" "CHRND WILD-TYPE" "CHRND WILD-TYPE" 
     TCGA-05-5429      TCGA-05-5715      TCGA-35-3615      TCGA-35-4122 
"CHRND WILD-TYPE" "CHRND WILD-TYPE" "CHRND WILD-TYPE" "CHRND WILD-TYPE" 
     TCGA-35-4123      TCGA-35-5375      TCGA-38-4625      TCGA-38-4626 
"CHRND WILD-TYPE" "CHRND WILD-TYPE" "CHRND WILD-TYPE" "CHRND WILD-TYPE" 
     TCGA-38-4627      TCGA-38-4628      TCGA-38-4629      TCGA-38-4630 
"CHRND WILD-TYPE" "CHRND WILD-TYPE" "CHRND WILD-TYPE" "CHRND WILD-TYPE" 
     TCGA-38-4631      TCGA-38-4632      TCGA-38-6178      TCGA-44-2655 
"CHRND WILD-TYPE"   "CHRND MUTATED" "CHRND WILD-TYPE" "CHRND WILD-TYPE" 
     TCGA-44-2656      TCGA-44-2657      TCGA-44-2659      TCGA-44-2661 
"CHRND WILD-TYPE" "CHRND WILD-TYPE" "CHRND WILD-TYPE" "CHRND WILD-TYPE" 
     TCGA-44-2662      TCGA-44-2665      TCGA-44-2666      TCGA-44-2668 
"CHRND WILD-TYPE" "CHRND WILD-TYPE" "CHRND WILD-TYPE" "CHRND WILD-TYPE" 
     TCGA-44-3396      TCGA-44-3398      TCGA-44-3918      TCGA-44-3919 
"CHRND WILD-TYPE" "CHRND WILD-TYPE"   "CHRND MUTATED" "CHRND WILD-TYPE" 
     TCGA-44-4112      TCGA-44-5643      TCGA-44-5645      TCGA-44-6144 
"CHRND WILD-TYPE" "CHRND WILD-TYPE" "CHRND WILD-TYPE" "CHRND WILD-TYPE" 
     TCGA-44-6145      TCGA-44-6146      TCGA-44-6147      TCGA-44-6148 
"CHRND WILD-TYPE" "CHRND WILD-TYPE" "CHRND WILD-TYPE" "CHRND WILD-TYPE" 
     TCGA-44-6774      TCGA-44-6775      TCGA-44-6776      TCGA-44-6777 
"CHRND WILD-TYPE" "CHRND WILD-TYPE" "CHRND WILD-TYPE" "CHRND WILD-TYPE" 
     TCGA-44-6778      TCGA-44-6779      TCGA-49-4486      TCGA-49-4487 
"CHRND WILD-TYPE" "CHRND WILD-TYPE" "CHRND WILD-TYPE" "CHRND WILD-TYPE" 
     TCGA-49-4488      TCGA-49-4490      TCGA-49-4494      TCGA-49-4501 
"CHRND WILD-TYPE" "CHRND WILD-TYPE" "CHRND WILD-TYPE" "CHRND WILD-TYPE" 
     TCGA-49-4505      TCGA-49-4506      TCGA-49-4507      TCGA-49-4510 
"CHRND WILD-TYPE" "CHRND WILD-TYPE" "CHRND WILD-TYPE" "CHRND WILD-TYPE" 
     TCGA-49-4512      TCGA-49-4514      TCGA-49-6742      TCGA-49-6743 
"CHRND WILD-TYPE" "CHRND WILD-TYPE" "CHRND WILD-TYPE" "CHRND WILD-TYPE" 
     TCGA-49-6744      TCGA-49-6745      TCGA-50-5044      TCGA-50-5045 
"CHRND WILD-TYPE" "CHRND WILD-TYPE" "CHRND WILD-TYPE" "CHRND WILD-TYPE" 
     TCGA-50-5049      TCGA-50-5051      TCGA-50-5055      TCGA-50-5066 
  "CHRND MUTATED" "CHRND WILD-TYPE" "CHRND WILD-TYPE" "CHRND WILD-TYPE" 
     TCGA-50-5068      TCGA-50-5072      TCGA-50-5930      TCGA-50-5931 
"CHRND WILD-TYPE" "CHRND WILD-TYPE" "CHRND WILD-TYPE" "CHRND WILD-TYPE" 
     TCGA-50-5932      TCGA-50-5933      TCGA-50-5935      TCGA-50-5936 
"CHRND WILD-TYPE" "CHRND WILD-TYPE" "CHRND WILD-TYPE" "CHRND WILD-TYPE" 
     TCGA-50-5939      TCGA-50-5941      TCGA-50-5942      TCGA-50-5944 
"CHRND WILD-TYPE" "CHRND WILD-TYPE" "CHRND WILD-TYPE" "CHRND WILD-TYPE" 
     TCGA-50-5946      TCGA-50-6590      TCGA-50-6591      TCGA-50-6592 
"CHRND WILD-TYPE" "CHRND WILD-TYPE" "CHRND WILD-TYPE" "CHRND WILD-TYPE" 
     TCGA-50-6593      TCGA-50-6594      TCGA-50-6595      TCGA-50-6597 
"CHRND WILD-TYPE" "CHRND WILD-TYPE" "CHRND WILD-TYPE" "CHRND WILD-TYPE" 
     TCGA-55-1592      TCGA-55-1594      TCGA-55-1595      TCGA-55-1596 
"CHRND WILD-TYPE" "CHRND WILD-TYPE" "CHRND WILD-TYPE" "CHRND WILD-TYPE" 
     TCGA-55-5899      TCGA-55-6543      TCGA-55-6642      TCGA-55-6712 
"CHRND WILD-TYPE" "CHRND WILD-TYPE" "CHRND WILD-TYPE" "CHRND WILD-TYPE" 
     TCGA-64-1676      TCGA-64-1677      TCGA-64-1678      TCGA-64-1680 
"CHRND WILD-TYPE" "CHRND WILD-TYPE" "CHRND WILD-TYPE" "CHRND WILD-TYPE" 
     TCGA-64-5774      TCGA-64-5775      TCGA-64-5778      TCGA-64-5779 
"CHRND WILD-TYPE" "CHRND WILD-TYPE"   "CHRND MUTATED" "CHRND WILD-TYPE" 
     TCGA-64-5781      TCGA-64-5815      TCGA-67-3770      TCGA-67-3771 
"CHRND WILD-TYPE" "CHRND WILD-TYPE" "CHRND WILD-TYPE" "CHRND WILD-TYPE" 
     TCGA-67-3772      TCGA-67-3773      TCGA-67-3774      TCGA-67-6215 
"CHRND WILD-TYPE" "CHRND WILD-TYPE" "CHRND WILD-TYPE" "CHRND WILD-TYPE" 
     TCGA-67-6216      TCGA-67-6217      TCGA-71-6725      TCGA-73-4658 
"CHRND WILD-TYPE" "CHRND WILD-TYPE" "CHRND WILD-TYPE" "CHRND WILD-TYPE" 
     TCGA-73-4659      TCGA-73-4662      TCGA-73-4666      TCGA-73-4668 
"CHRND WILD-TYPE" "CHRND WILD-TYPE" "CHRND WILD-TYPE" "CHRND WILD-TYPE" 
     TCGA-73-4670      TCGA-73-4675      TCGA-73-4676      TCGA-73-4677 
"CHRND WILD-TYPE" "CHRND WILD-TYPE" "CHRND WILD-TYPE" "CHRND WILD-TYPE" 
     TCGA-91-6828      TCGA-91-6829      TCGA-91-6831      TCGA-91-6835 
"CHRND WILD-TYPE" "CHRND WILD-TYPE" "CHRND WILD-TYPE" "CHRND WILD-TYPE" 
     TCGA-91-6836 
"CHRND WILD-TYPE" 
[1] "hr=" "1.7"
D285V2, continuous
D285V3, binary
[1] "tbl2"
                 cls
clus              [,1] [,2]
  CHRND MUTATED      2    6
  CHRND WILD-TYPE   91   73
        clus
vv       CHRND MUTATED CHRND WILD-TYPE
  FEMALE             2              91
  MALE               6              73
D285V4, continuous
[1] "Remove cluster labels:" "CHRND MUTATED"         
clus
  CHRND MUTATED CHRND WILD-TYPE 
              1              11 
     TCGA-35-4122      TCGA-35-4123      TCGA-35-5375      TCGA-64-1677 
"CHRND WILD-TYPE" "CHRND WILD-TYPE" "CHRND WILD-TYPE" "CHRND WILD-TYPE" 
     TCGA-71-6725      TCGA-73-4659      TCGA-73-4662      TCGA-73-4666 
"CHRND WILD-TYPE" "CHRND WILD-TYPE" "CHRND WILD-TYPE" "CHRND WILD-TYPE" 
     TCGA-73-4668      TCGA-73-4676      TCGA-75-5122 
"CHRND WILD-TYPE" "CHRND WILD-TYPE" "CHRND WILD-TYPE" 
D285V5, multiclass
D285V6, multiclass
    clus
vv   CHRND MUTATED CHRND WILD-TYPE
  T1             1              40
  T2             6             102
  T3             1              13
  T4             0               8
D285V7, multiclass
       clus
vv      CHRND MUTATED CHRND WILD-TYPE
  N0                5              90
  N1                2              35
  N2+N3             1              34
D285V8, multiclass
    clus
vv   CHRND MUTATED CHRND WILD-TYPE
  M0             7             130
  M1             1               8
  MX             0              22
D285V9, multiclass
     clus
vv    CHRND MUTATED CHRND WILD-TYPE
  I               5              83
  II              1              32
  III             1              38
  IV              1               8
D285V10, binary
[1] "tbl2"
                 cls
clus              [,1] [,2]
  CHRND MUTATED      1    7
  CHRND WILD-TYPE   15  149
     clus
vv    CHRND MUTATED CHRND WILD-TYPE
  NO              1              15
  YES             7             149
D285V11, continuous
D285V12, continuous
D285V13, multiclass
                                             clus
vv                                            CHRND MUTATED CHRND WILD-TYPE
  CURRENT REFORMED SMOKER FOR < OR = 15 YEARS             2              60
  CURRENT REFORMED SMOKER FOR > 15 YEARS                  1              45
  CURRENT SMOKER                                          4              24
  LIFELONG NON-SMOKER                                     0              24
D285V14, continuous
[1] "Remove cluster labels:" "CHRND MUTATED"         
clus
  CHRND MUTATED CHRND WILD-TYPE 
              2              66 
     TCGA-05-4384      TCGA-05-4390      TCGA-05-4396      TCGA-05-4405 
"CHRND WILD-TYPE" "CHRND WILD-TYPE" "CHRND WILD-TYPE" "CHRND WILD-TYPE" 
     TCGA-05-4410      TCGA-05-4415      TCGA-05-4417      TCGA-05-4424 
"CHRND WILD-TYPE" "CHRND WILD-TYPE" "CHRND WILD-TYPE" "CHRND WILD-TYPE" 
     TCGA-05-4427      TCGA-05-4433      TCGA-05-5420      TCGA-05-5423 
"CHRND WILD-TYPE" "CHRND WILD-TYPE" "CHRND WILD-TYPE" "CHRND WILD-TYPE" 
     TCGA-05-5425      TCGA-05-5428      TCGA-35-4122      TCGA-35-4123 
"CHRND WILD-TYPE" "CHRND WILD-TYPE" "CHRND WILD-TYPE" "CHRND WILD-TYPE" 
     TCGA-35-5375      TCGA-38-4625      TCGA-38-4626      TCGA-44-2655 
"CHRND WILD-TYPE" "CHRND WILD-TYPE" "CHRND WILD-TYPE" "CHRND WILD-TYPE" 
     TCGA-44-2656      TCGA-44-2657      TCGA-44-2659      TCGA-44-2662 
"CHRND WILD-TYPE" "CHRND WILD-TYPE" "CHRND WILD-TYPE" "CHRND WILD-TYPE" 
     TCGA-44-2666      TCGA-44-2668      TCGA-44-3396      TCGA-44-3398 
"CHRND WILD-TYPE" "CHRND WILD-TYPE" "CHRND WILD-TYPE" "CHRND WILD-TYPE" 
     TCGA-44-4112      TCGA-44-5645      TCGA-44-6144      TCGA-44-6145 
"CHRND WILD-TYPE" "CHRND WILD-TYPE" "CHRND WILD-TYPE" "CHRND WILD-TYPE" 
     TCGA-44-6147      TCGA-44-6148      TCGA-44-6774      TCGA-44-6775 
"CHRND WILD-TYPE" "CHRND WILD-TYPE" "CHRND WILD-TYPE" "CHRND WILD-TYPE" 
     TCGA-44-6776      TCGA-44-6777      TCGA-44-6778      TCGA-44-6779 
"CHRND WILD-TYPE" "CHRND WILD-TYPE" "CHRND WILD-TYPE" "CHRND WILD-TYPE" 
     TCGA-49-4486      TCGA-49-4494      TCGA-49-4505      TCGA-55-1592 
"CHRND WILD-TYPE" "CHRND WILD-TYPE" "CHRND WILD-TYPE" "CHRND WILD-TYPE" 
     TCGA-55-1594      TCGA-55-1595      TCGA-55-1596      TCGA-55-5899 
"CHRND WILD-TYPE" "CHRND WILD-TYPE" "CHRND WILD-TYPE" "CHRND WILD-TYPE" 
     TCGA-55-6642      TCGA-55-6712      TCGA-64-1677      TCGA-64-1678 
"CHRND WILD-TYPE" "CHRND WILD-TYPE" "CHRND WILD-TYPE" "CHRND WILD-TYPE" 
     TCGA-64-1680      TCGA-64-5774      TCGA-64-5775      TCGA-64-5779 
"CHRND WILD-TYPE" "CHRND WILD-TYPE" "CHRND WILD-TYPE" "CHRND WILD-TYPE" 
     TCGA-64-5781      TCGA-73-4659      TCGA-73-4662      TCGA-73-4666 
"CHRND WILD-TYPE" "CHRND WILD-TYPE" "CHRND WILD-TYPE" "CHRND WILD-TYPE" 
     TCGA-73-4668      TCGA-73-4670      TCGA-73-4675      TCGA-73-4676 
"CHRND WILD-TYPE" "CHRND WILD-TYPE" "CHRND WILD-TYPE" "CHRND WILD-TYPE" 
     TCGA-91-6829      TCGA-91-6836 
"CHRND WILD-TYPE" "CHRND WILD-TYPE" 

Clustering(286) Variable = IL31 MUTATION ANALYSIS
D286V1, survival
                sevent
clus2             0  1
  IL31 MUTATED    2  0
  IL31 WILD-TYPE 97 50
  IL31 MUTATED IL31 WILD-TYPE 
             2            147 
  IL31 MUTATED IL31 WILD-TYPE 
             0             50 
$`IL31 MUTATED`
TCGA-67-6216 TCGA-91-6828 
        0.69         1.22 

$`IL31 WILD-TYPE`
TCGA-05-4249 TCGA-05-4250 TCGA-05-4382 TCGA-05-4384 TCGA-05-4390 TCGA-05-4396 
       38.07         3.98        19.92        14.01        37.02         9.96 
TCGA-05-4397 TCGA-05-4398 TCGA-05-4402 TCGA-05-4405 TCGA-05-4415 TCGA-05-4417 
       24.03        47.05         8.02        20.05         2.96        14.93 
TCGA-05-4418 TCGA-05-4420 TCGA-05-4424 TCGA-05-4426 TCGA-05-4427 TCGA-05-4430 
        8.98        29.95        30.02        26.01        26.01        25.02 
TCGA-05-4432 TCGA-05-4433 TCGA-05-4434 TCGA-05-5420 TCGA-05-5423 TCGA-05-5425 
       25.02        24.00        15.02         1.02         4.96         2.96 
TCGA-05-5429 TCGA-05-5715 TCGA-35-3615 TCGA-35-4122 TCGA-35-4123 TCGA-35-5375 
        0.99         2.04         0.46         7.36         5.95         8.68 
TCGA-38-4625 TCGA-38-4626 TCGA-38-4627 TCGA-38-4628 TCGA-38-4629 TCGA-38-4630 
       47.61        85.32        37.71        49.02        28.37        35.28 
TCGA-38-4631 TCGA-38-4632 TCGA-38-6178 TCGA-44-2655 TCGA-44-2656 TCGA-44-2657 
       11.64        44.61         5.19        18.87        19.10        13.15 
TCGA-44-2659 TCGA-44-2661 TCGA-44-2662 TCGA-44-2665 TCGA-44-2666 TCGA-44-2668 
       17.39         3.39        15.78        13.15         3.19         8.09 
TCGA-44-3396 TCGA-44-3398 TCGA-44-3918 TCGA-44-3919 TCGA-44-4112 TCGA-44-5643 
       10.22         8.32         6.44         6.21         4.60         3.48 
TCGA-44-5645 TCGA-44-6144 TCGA-44-6145 TCGA-44-6146 TCGA-44-6147 TCGA-44-6148 
        6.84         0.30         3.35         9.93         7.76         3.12 
TCGA-44-6774 TCGA-44-6775 TCGA-44-6776 TCGA-44-6777 TCGA-44-6778 TCGA-44-6779 
        5.42         2.70        63.72        32.45        36.49        16.41 
TCGA-49-4486 TCGA-49-4487 TCGA-49-4488 TCGA-49-4490 TCGA-49-4494 TCGA-49-4501 
       76.21        28.11        28.57        12.66        35.54        46.72 
TCGA-49-4505 TCGA-49-4506 TCGA-49-4507 TCGA-49-4510 TCGA-49-4512 TCGA-49-4514 
       14.07        32.84         8.81        29.46        29.75        43.20 
TCGA-49-6742 TCGA-49-6743 TCGA-49-6744 TCGA-49-6745 TCGA-50-5044 TCGA-50-5045 
       15.02        12.13        12.99         4.93        20.48        71.47 
TCGA-50-5049 TCGA-50-5051 TCGA-50-5055 TCGA-50-5066 TCGA-50-5068 TCGA-50-5072 
       48.82        14.96        25.81         9.76        49.28         8.05 
TCGA-50-5930 TCGA-50-5931 TCGA-50-5932 TCGA-50-5933 TCGA-50-5935 TCGA-50-5936 
        9.27         8.78        35.87        77.88        21.47         8.45 
TCGA-50-5939 TCGA-50-5941 TCGA-50-5942 TCGA-50-5944 TCGA-50-5946 TCGA-50-6590 
       15.12         9.37         4.44        12.26        11.47        42.31 
TCGA-50-6591 TCGA-50-6592 TCGA-50-6593 TCGA-50-6594 TCGA-50-6595 TCGA-50-6597 
        3.88        25.51        11.05        12.16         6.21        33.37 
TCGA-55-1592 TCGA-55-1594 TCGA-55-1595 TCGA-55-1596 TCGA-55-5899 TCGA-55-6543 
       23.05        38.73        48.62        45.17         2.86         0.07 
TCGA-55-6642 TCGA-55-6712 TCGA-64-1676 TCGA-64-1677 TCGA-64-1678 TCGA-64-1680 
       32.61         0.79        56.81        20.65        39.09        37.02 
TCGA-64-5774 TCGA-64-5775 TCGA-64-5778 TCGA-64-5779 TCGA-64-5781 TCGA-64-5815 
       83.84         0.10        30.44        16.67        39.52         7.33 
TCGA-67-3770 TCGA-67-3771 TCGA-67-3772 TCGA-67-3773 TCGA-67-3774 TCGA-67-6215 
        0.99         1.97         0.59         2.04         0.59         0.89 
TCGA-67-6217 TCGA-71-6725 TCGA-73-4658 TCGA-73-4659 TCGA-73-4662 TCGA-73-4666 
       13.87         2.01        52.57        23.38        29.95        20.28 
TCGA-73-4668 TCGA-73-4670 TCGA-73-4675 TCGA-73-4676 TCGA-73-4677 TCGA-91-6829 
       15.35         0.46         1.32         4.01         1.25        41.33 
TCGA-91-6831 TCGA-91-6835 TCGA-91-6836 
        1.28         1.15         0.36 

  IL31 MUTATED IL31 WILD-TYPE 
          0.69           0.07 
  IL31 MUTATED IL31 WILD-TYPE 
          1.22          85.32 
  IL31 MUTATED IL31 WILD-TYPE 
         0.955         14.010 
[1] "0.7 - 1.2 (1.0)"   "0.1 - 85.3 (14.0)"
    TCGA-05-4249     TCGA-05-4250     TCGA-05-4382     TCGA-05-4384 
"IL31 WILD-TYPE" "IL31 WILD-TYPE" "IL31 WILD-TYPE" "IL31 WILD-TYPE" 
    TCGA-05-4390     TCGA-05-4396     TCGA-05-4397     TCGA-05-4398 
"IL31 WILD-TYPE" "IL31 WILD-TYPE" "IL31 WILD-TYPE" "IL31 WILD-TYPE" 
    TCGA-05-4402     TCGA-05-4405     TCGA-05-4415     TCGA-05-4417 
"IL31 WILD-TYPE" "IL31 WILD-TYPE" "IL31 WILD-TYPE" "IL31 WILD-TYPE" 
    TCGA-05-4418     TCGA-05-4420     TCGA-05-4424     TCGA-05-4426 
"IL31 WILD-TYPE" "IL31 WILD-TYPE" "IL31 WILD-TYPE" "IL31 WILD-TYPE" 
    TCGA-05-4427     TCGA-05-4430     TCGA-05-4432     TCGA-05-4433 
"IL31 WILD-TYPE" "IL31 WILD-TYPE" "IL31 WILD-TYPE" "IL31 WILD-TYPE" 
    TCGA-05-4434     TCGA-05-5420     TCGA-05-5423     TCGA-05-5425 
"IL31 WILD-TYPE" "IL31 WILD-TYPE" "IL31 WILD-TYPE" "IL31 WILD-TYPE" 
    TCGA-05-5429     TCGA-05-5715     TCGA-35-3615     TCGA-35-4122 
"IL31 WILD-TYPE" "IL31 WILD-TYPE" "IL31 WILD-TYPE" "IL31 WILD-TYPE" 
    TCGA-35-4123     TCGA-35-5375     TCGA-38-4625     TCGA-38-4626 
"IL31 WILD-TYPE" "IL31 WILD-TYPE" "IL31 WILD-TYPE" "IL31 WILD-TYPE" 
    TCGA-38-4627     TCGA-38-4628     TCGA-38-4629     TCGA-38-4630 
"IL31 WILD-TYPE" "IL31 WILD-TYPE" "IL31 WILD-TYPE" "IL31 WILD-TYPE" 
    TCGA-38-4631     TCGA-38-4632     TCGA-38-6178     TCGA-44-2655 
"IL31 WILD-TYPE" "IL31 WILD-TYPE" "IL31 WILD-TYPE" "IL31 WILD-TYPE" 
    TCGA-44-2656     TCGA-44-2657     TCGA-44-2659     TCGA-44-2661 
"IL31 WILD-TYPE" "IL31 WILD-TYPE" "IL31 WILD-TYPE" "IL31 WILD-TYPE" 
    TCGA-44-2662     TCGA-44-2665     TCGA-44-2666     TCGA-44-2668 
"IL31 WILD-TYPE" "IL31 WILD-TYPE" "IL31 WILD-TYPE" "IL31 WILD-TYPE" 
    TCGA-44-3396     TCGA-44-3398     TCGA-44-3918     TCGA-44-3919 
"IL31 WILD-TYPE" "IL31 WILD-TYPE" "IL31 WILD-TYPE" "IL31 WILD-TYPE" 
    TCGA-44-4112     TCGA-44-5643     TCGA-44-5645     TCGA-44-6144 
"IL31 WILD-TYPE" "IL31 WILD-TYPE" "IL31 WILD-TYPE" "IL31 WILD-TYPE" 
    TCGA-44-6145     TCGA-44-6146     TCGA-44-6147     TCGA-44-6148 
"IL31 WILD-TYPE" "IL31 WILD-TYPE" "IL31 WILD-TYPE" "IL31 WILD-TYPE" 
    TCGA-44-6774     TCGA-44-6775     TCGA-44-6776     TCGA-44-6777 
"IL31 WILD-TYPE" "IL31 WILD-TYPE" "IL31 WILD-TYPE" "IL31 WILD-TYPE" 
    TCGA-44-6778     TCGA-44-6779     TCGA-49-4486     TCGA-49-4487 
"IL31 WILD-TYPE" "IL31 WILD-TYPE" "IL31 WILD-TYPE" "IL31 WILD-TYPE" 
    TCGA-49-4488     TCGA-49-4490     TCGA-49-4494     TCGA-49-4501 
"IL31 WILD-TYPE" "IL31 WILD-TYPE" "IL31 WILD-TYPE" "IL31 WILD-TYPE" 
    TCGA-49-4505     TCGA-49-4506     TCGA-49-4507     TCGA-49-4510 
"IL31 WILD-TYPE" "IL31 WILD-TYPE" "IL31 WILD-TYPE" "IL31 WILD-TYPE" 
    TCGA-49-4512     TCGA-49-4514     TCGA-49-6742     TCGA-49-6743 
"IL31 WILD-TYPE" "IL31 WILD-TYPE" "IL31 WILD-TYPE" "IL31 WILD-TYPE" 
    TCGA-49-6744     TCGA-49-6745     TCGA-50-5044     TCGA-50-5045 
"IL31 WILD-TYPE" "IL31 WILD-TYPE" "IL31 WILD-TYPE" "IL31 WILD-TYPE" 
    TCGA-50-5049     TCGA-50-5051     TCGA-50-5055     TCGA-50-5066 
"IL31 WILD-TYPE" "IL31 WILD-TYPE" "IL31 WILD-TYPE" "IL31 WILD-TYPE" 
    TCGA-50-5068     TCGA-50-5072     TCGA-50-5930     TCGA-50-5931 
"IL31 WILD-TYPE" "IL31 WILD-TYPE" "IL31 WILD-TYPE" "IL31 WILD-TYPE" 
    TCGA-50-5932     TCGA-50-5933     TCGA-50-5935     TCGA-50-5936 
"IL31 WILD-TYPE" "IL31 WILD-TYPE" "IL31 WILD-TYPE" "IL31 WILD-TYPE" 
    TCGA-50-5939     TCGA-50-5941     TCGA-50-5942     TCGA-50-5944 
"IL31 WILD-TYPE" "IL31 WILD-TYPE" "IL31 WILD-TYPE" "IL31 WILD-TYPE" 
    TCGA-50-5946     TCGA-50-6590     TCGA-50-6591     TCGA-50-6592 
"IL31 WILD-TYPE" "IL31 WILD-TYPE" "IL31 WILD-TYPE" "IL31 WILD-TYPE" 
    TCGA-50-6593     TCGA-50-6594     TCGA-50-6595     TCGA-50-6597 
"IL31 WILD-TYPE" "IL31 WILD-TYPE" "IL31 WILD-TYPE" "IL31 WILD-TYPE" 
    TCGA-55-1592     TCGA-55-1594     TCGA-55-1595     TCGA-55-1596 
"IL31 WILD-TYPE" "IL31 WILD-TYPE" "IL31 WILD-TYPE" "IL31 WILD-TYPE" 
    TCGA-55-5899     TCGA-55-6543     TCGA-55-6642     TCGA-55-6712 
"IL31 WILD-TYPE" "IL31 WILD-TYPE" "IL31 WILD-TYPE" "IL31 WILD-TYPE" 
    TCGA-64-1676     TCGA-64-1677     TCGA-64-1678     TCGA-64-1680 
"IL31 WILD-TYPE" "IL31 WILD-TYPE" "IL31 WILD-TYPE" "IL31 WILD-TYPE" 
    TCGA-64-5774     TCGA-64-5775     TCGA-64-5778     TCGA-64-5779 
"IL31 WILD-TYPE" "IL31 WILD-TYPE" "IL31 WILD-TYPE" "IL31 WILD-TYPE" 
    TCGA-64-5781     TCGA-64-5815     TCGA-67-3770     TCGA-67-3771 
"IL31 WILD-TYPE" "IL31 WILD-TYPE" "IL31 WILD-TYPE" "IL31 WILD-TYPE" 
    TCGA-67-3772     TCGA-67-3773     TCGA-67-3774     TCGA-67-6215 
"IL31 WILD-TYPE" "IL31 WILD-TYPE" "IL31 WILD-TYPE" "IL31 WILD-TYPE" 
    TCGA-67-6216     TCGA-67-6217     TCGA-71-6725     TCGA-73-4658 
  "IL31 MUTATED" "IL31 WILD-TYPE" "IL31 WILD-TYPE" "IL31 WILD-TYPE" 
    TCGA-73-4659     TCGA-73-4662     TCGA-73-4666     TCGA-73-4668 
"IL31 WILD-TYPE" "IL31 WILD-TYPE" "IL31 WILD-TYPE" "IL31 WILD-TYPE" 
    TCGA-73-4670     TCGA-73-4675     TCGA-73-4676     TCGA-73-4677 
"IL31 WILD-TYPE" "IL31 WILD-TYPE" "IL31 WILD-TYPE" "IL31 WILD-TYPE" 
    TCGA-91-6828     TCGA-91-6829     TCGA-91-6831     TCGA-91-6835 
  "IL31 MUTATED" "IL31 WILD-TYPE" "IL31 WILD-TYPE" "IL31 WILD-TYPE" 
    TCGA-91-6836 
"IL31 WILD-TYPE" 
    TCGA-05-4249     TCGA-05-4250     TCGA-05-4382     TCGA-05-4384 
"IL31 WILD-TYPE" "IL31 WILD-TYPE" "IL31 WILD-TYPE" "IL31 WILD-TYPE" 
    TCGA-05-4390     TCGA-05-4396     TCGA-05-4397     TCGA-05-4398 
"IL31 WILD-TYPE" "IL31 WILD-TYPE" "IL31 WILD-TYPE" "IL31 WILD-TYPE" 
    TCGA-05-4402     TCGA-05-4405     TCGA-05-4415     TCGA-05-4417 
"IL31 WILD-TYPE" "IL31 WILD-TYPE" "IL31 WILD-TYPE" "IL31 WILD-TYPE" 
    TCGA-05-4418     TCGA-05-4420     TCGA-05-4424     TCGA-05-4426 
"IL31 WILD-TYPE" "IL31 WILD-TYPE" "IL31 WILD-TYPE" "IL31 WILD-TYPE" 
    TCGA-05-4427     TCGA-05-4430     TCGA-05-4432     TCGA-05-4433 
"IL31 WILD-TYPE" "IL31 WILD-TYPE" "IL31 WILD-TYPE" "IL31 WILD-TYPE" 
    TCGA-05-4434     TCGA-05-5420     TCGA-05-5423     TCGA-05-5425 
"IL31 WILD-TYPE" "IL31 WILD-TYPE" "IL31 WILD-TYPE" "IL31 WILD-TYPE" 
    TCGA-05-5429     TCGA-05-5715     TCGA-35-3615     TCGA-35-4122 
"IL31 WILD-TYPE" "IL31 WILD-TYPE" "IL31 WILD-TYPE" "IL31 WILD-TYPE" 
    TCGA-35-4123     TCGA-35-5375     TCGA-38-4625     TCGA-38-4626 
"IL31 WILD-TYPE" "IL31 WILD-TYPE" "IL31 WILD-TYPE" "IL31 WILD-TYPE" 
    TCGA-38-4627     TCGA-38-4628     TCGA-38-4629     TCGA-38-4630 
"IL31 WILD-TYPE" "IL31 WILD-TYPE" "IL31 WILD-TYPE" "IL31 WILD-TYPE" 
    TCGA-38-4631     TCGA-38-4632     TCGA-38-6178     TCGA-44-2655 
"IL31 WILD-TYPE" "IL31 WILD-TYPE" "IL31 WILD-TYPE" "IL31 WILD-TYPE" 
    TCGA-44-2656     TCGA-44-2657     TCGA-44-2659     TCGA-44-2661 
"IL31 WILD-TYPE" "IL31 WILD-TYPE" "IL31 WILD-TYPE" "IL31 WILD-TYPE" 
    TCGA-44-2662     TCGA-44-2665     TCGA-44-2666     TCGA-44-2668 
"IL31 WILD-TYPE" "IL31 WILD-TYPE" "IL31 WILD-TYPE" "IL31 WILD-TYPE" 
    TCGA-44-3396     TCGA-44-3398     TCGA-44-3918     TCGA-44-3919 
"IL31 WILD-TYPE" "IL31 WILD-TYPE" "IL31 WILD-TYPE" "IL31 WILD-TYPE" 
    TCGA-44-4112     TCGA-44-5643     TCGA-44-5645     TCGA-44-6144 
"IL31 WILD-TYPE" "IL31 WILD-TYPE" "IL31 WILD-TYPE" "IL31 WILD-TYPE" 
    TCGA-44-6145     TCGA-44-6146     TCGA-44-6147     TCGA-44-6148 
"IL31 WILD-TYPE" "IL31 WILD-TYPE" "IL31 WILD-TYPE" "IL31 WILD-TYPE" 
    TCGA-44-6774     TCGA-44-6775     TCGA-44-6776     TCGA-44-6777 
"IL31 WILD-TYPE" "IL31 WILD-TYPE" "IL31 WILD-TYPE" "IL31 WILD-TYPE" 
    TCGA-44-6778     TCGA-44-6779     TCGA-49-4486     TCGA-49-4487 
"IL31 WILD-TYPE" "IL31 WILD-TYPE" "IL31 WILD-TYPE" "IL31 WILD-TYPE" 
    TCGA-49-4488     TCGA-49-4490     TCGA-49-4494     TCGA-49-4501 
"IL31 WILD-TYPE" "IL31 WILD-TYPE" "IL31 WILD-TYPE" "IL31 WILD-TYPE" 
    TCGA-49-4505     TCGA-49-4506     TCGA-49-4507     TCGA-49-4510 
"IL31 WILD-TYPE" "IL31 WILD-TYPE" "IL31 WILD-TYPE" "IL31 WILD-TYPE" 
    TCGA-49-4512     TCGA-49-4514     TCGA-49-6742     TCGA-49-6743 
"IL31 WILD-TYPE" "IL31 WILD-TYPE" "IL31 WILD-TYPE" "IL31 WILD-TYPE" 
    TCGA-49-6744     TCGA-49-6745     TCGA-50-5044     TCGA-50-5045 
"IL31 WILD-TYPE" "IL31 WILD-TYPE" "IL31 WILD-TYPE" "IL31 WILD-TYPE" 
    TCGA-50-5049     TCGA-50-5051     TCGA-50-5055     TCGA-50-5066 
"IL31 WILD-TYPE" "IL31 WILD-TYPE" "IL31 WILD-TYPE" "IL31 WILD-TYPE" 
    TCGA-50-5068     TCGA-50-5072     TCGA-50-5930     TCGA-50-5931 
"IL31 WILD-TYPE" "IL31 WILD-TYPE" "IL31 WILD-TYPE" "IL31 WILD-TYPE" 
    TCGA-50-5932     TCGA-50-5933     TCGA-50-5935     TCGA-50-5936 
"IL31 WILD-TYPE" "IL31 WILD-TYPE" "IL31 WILD-TYPE" "IL31 WILD-TYPE" 
    TCGA-50-5939     TCGA-50-5941     TCGA-50-5942     TCGA-50-5944 
"IL31 WILD-TYPE" "IL31 WILD-TYPE" "IL31 WILD-TYPE" "IL31 WILD-TYPE" 
    TCGA-50-5946     TCGA-50-6590     TCGA-50-6591     TCGA-50-6592 
"IL31 WILD-TYPE" "IL31 WILD-TYPE" "IL31 WILD-TYPE" "IL31 WILD-TYPE" 
    TCGA-50-6593     TCGA-50-6594     TCGA-50-6595     TCGA-50-6597 
"IL31 WILD-TYPE" "IL31 WILD-TYPE" "IL31 WILD-TYPE" "IL31 WILD-TYPE" 
    TCGA-55-1592     TCGA-55-1594     TCGA-55-1595     TCGA-55-1596 
"IL31 WILD-TYPE" "IL31 WILD-TYPE" "IL31 WILD-TYPE" "IL31 WILD-TYPE" 
    TCGA-55-5899     TCGA-55-6543     TCGA-55-6642     TCGA-55-6712 
"IL31 WILD-TYPE" "IL31 WILD-TYPE" "IL31 WILD-TYPE" "IL31 WILD-TYPE" 
    TCGA-64-1676     TCGA-64-1677     TCGA-64-1678     TCGA-64-1680 
"IL31 WILD-TYPE" "IL31 WILD-TYPE" "IL31 WILD-TYPE" "IL31 WILD-TYPE" 
    TCGA-64-5774     TCGA-64-5775     TCGA-64-5778     TCGA-64-5779 
"IL31 WILD-TYPE" "IL31 WILD-TYPE" "IL31 WILD-TYPE" "IL31 WILD-TYPE" 
    TCGA-64-5781     TCGA-64-5815     TCGA-67-3770     TCGA-67-3771 
"IL31 WILD-TYPE" "IL31 WILD-TYPE" "IL31 WILD-TYPE" "IL31 WILD-TYPE" 
    TCGA-67-3772     TCGA-67-3773     TCGA-67-3774     TCGA-67-6215 
"IL31 WILD-TYPE" "IL31 WILD-TYPE" "IL31 WILD-TYPE" "IL31 WILD-TYPE" 
    TCGA-67-6216     TCGA-67-6217     TCGA-71-6725     TCGA-73-4658 
  "IL31 MUTATED" "IL31 WILD-TYPE" "IL31 WILD-TYPE" "IL31 WILD-TYPE" 
    TCGA-73-4659     TCGA-73-4662     TCGA-73-4666     TCGA-73-4668 
"IL31 WILD-TYPE" "IL31 WILD-TYPE" "IL31 WILD-TYPE" "IL31 WILD-TYPE" 
    TCGA-73-4670     TCGA-73-4675     TCGA-73-4676     TCGA-73-4677 
"IL31 WILD-TYPE" "IL31 WILD-TYPE" "IL31 WILD-TYPE" "IL31 WILD-TYPE" 
    TCGA-91-6828     TCGA-91-6829     TCGA-91-6831     TCGA-91-6835 
  "IL31 MUTATED" "IL31 WILD-TYPE" "IL31 WILD-TYPE" "IL31 WILD-TYPE" 
    TCGA-91-6836 
"IL31 WILD-TYPE" 
    TCGA-05-4249     TCGA-05-4250     TCGA-05-4382     TCGA-05-4384 
"IL31 WILD-TYPE" "IL31 WILD-TYPE" "IL31 WILD-TYPE" "IL31 WILD-TYPE" 
    TCGA-05-4390     TCGA-05-4396     TCGA-05-4397     TCGA-05-4398 
"IL31 WILD-TYPE" "IL31 WILD-TYPE" "IL31 WILD-TYPE" "IL31 WILD-TYPE" 
    TCGA-05-4402     TCGA-05-4405     TCGA-05-4415     TCGA-05-4417 
"IL31 WILD-TYPE" "IL31 WILD-TYPE" "IL31 WILD-TYPE" "IL31 WILD-TYPE" 
    TCGA-05-4418     TCGA-05-4420     TCGA-05-4424     TCGA-05-4426 
"IL31 WILD-TYPE" "IL31 WILD-TYPE" "IL31 WILD-TYPE" "IL31 WILD-TYPE" 
    TCGA-05-4427     TCGA-05-4430     TCGA-05-4432     TCGA-05-4433 
"IL31 WILD-TYPE" "IL31 WILD-TYPE" "IL31 WILD-TYPE" "IL31 WILD-TYPE" 
    TCGA-05-4434     TCGA-05-5420     TCGA-05-5423     TCGA-05-5425 
"IL31 WILD-TYPE" "IL31 WILD-TYPE" "IL31 WILD-TYPE" "IL31 WILD-TYPE" 
    TCGA-05-5429     TCGA-05-5715     TCGA-35-3615     TCGA-35-4122 
"IL31 WILD-TYPE" "IL31 WILD-TYPE" "IL31 WILD-TYPE" "IL31 WILD-TYPE" 
    TCGA-35-4123     TCGA-35-5375     TCGA-38-4625     TCGA-38-4626 
"IL31 WILD-TYPE" "IL31 WILD-TYPE" "IL31 WILD-TYPE" "IL31 WILD-TYPE" 
    TCGA-38-4627     TCGA-38-4628     TCGA-38-4629     TCGA-38-4630 
"IL31 WILD-TYPE" "IL31 WILD-TYPE" "IL31 WILD-TYPE" "IL31 WILD-TYPE" 
    TCGA-38-4631     TCGA-38-4632     TCGA-38-6178     TCGA-44-2655 
"IL31 WILD-TYPE" "IL31 WILD-TYPE" "IL31 WILD-TYPE" "IL31 WILD-TYPE" 
    TCGA-44-2656     TCGA-44-2657     TCGA-44-2659     TCGA-44-2661 
"IL31 WILD-TYPE" "IL31 WILD-TYPE" "IL31 WILD-TYPE" "IL31 WILD-TYPE" 
    TCGA-44-2662     TCGA-44-2665     TCGA-44-2666     TCGA-44-2668 
"IL31 WILD-TYPE" "IL31 WILD-TYPE" "IL31 WILD-TYPE" "IL31 WILD-TYPE" 
    TCGA-44-3396     TCGA-44-3398     TCGA-44-3918     TCGA-44-3919 
"IL31 WILD-TYPE" "IL31 WILD-TYPE" "IL31 WILD-TYPE" "IL31 WILD-TYPE" 
    TCGA-44-4112     TCGA-44-5643     TCGA-44-5645     TCGA-44-6144 
"IL31 WILD-TYPE" "IL31 WILD-TYPE" "IL31 WILD-TYPE" "IL31 WILD-TYPE" 
    TCGA-44-6145     TCGA-44-6146     TCGA-44-6147     TCGA-44-6148 
"IL31 WILD-TYPE" "IL31 WILD-TYPE" "IL31 WILD-TYPE" "IL31 WILD-TYPE" 
    TCGA-44-6774     TCGA-44-6775     TCGA-44-6776     TCGA-44-6777 
"IL31 WILD-TYPE" "IL31 WILD-TYPE" "IL31 WILD-TYPE" "IL31 WILD-TYPE" 
    TCGA-44-6778     TCGA-44-6779     TCGA-49-4486     TCGA-49-4487 
"IL31 WILD-TYPE" "IL31 WILD-TYPE" "IL31 WILD-TYPE" "IL31 WILD-TYPE" 
    TCGA-49-4488     TCGA-49-4490     TCGA-49-4494     TCGA-49-4501 
"IL31 WILD-TYPE" "IL31 WILD-TYPE" "IL31 WILD-TYPE" "IL31 WILD-TYPE" 
    TCGA-49-4505     TCGA-49-4506     TCGA-49-4507     TCGA-49-4510 
"IL31 WILD-TYPE" "IL31 WILD-TYPE" "IL31 WILD-TYPE" "IL31 WILD-TYPE" 
    TCGA-49-4512     TCGA-49-4514     TCGA-49-6742     TCGA-49-6743 
"IL31 WILD-TYPE" "IL31 WILD-TYPE" "IL31 WILD-TYPE" "IL31 WILD-TYPE" 
    TCGA-49-6744     TCGA-49-6745     TCGA-50-5044     TCGA-50-5045 
"IL31 WILD-TYPE" "IL31 WILD-TYPE" "IL31 WILD-TYPE" "IL31 WILD-TYPE" 
    TCGA-50-5049     TCGA-50-5051     TCGA-50-5055     TCGA-50-5066 
"IL31 WILD-TYPE" "IL31 WILD-TYPE" "IL31 WILD-TYPE" "IL31 WILD-TYPE" 
    TCGA-50-5068     TCGA-50-5072     TCGA-50-5930     TCGA-50-5931 
"IL31 WILD-TYPE" "IL31 WILD-TYPE" "IL31 WILD-TYPE" "IL31 WILD-TYPE" 
    TCGA-50-5932     TCGA-50-5933     TCGA-50-5935     TCGA-50-5936 
"IL31 WILD-TYPE" "IL31 WILD-TYPE" "IL31 WILD-TYPE" "IL31 WILD-TYPE" 
    TCGA-50-5939     TCGA-50-5941     TCGA-50-5942     TCGA-50-5944 
"IL31 WILD-TYPE" "IL31 WILD-TYPE" "IL31 WILD-TYPE" "IL31 WILD-TYPE" 
    TCGA-50-5946     TCGA-50-6590     TCGA-50-6591     TCGA-50-6592 
"IL31 WILD-TYPE" "IL31 WILD-TYPE" "IL31 WILD-TYPE" "IL31 WILD-TYPE" 
    TCGA-50-6593     TCGA-50-6594     TCGA-50-6595     TCGA-50-6597 
"IL31 WILD-TYPE" "IL31 WILD-TYPE" "IL31 WILD-TYPE" "IL31 WILD-TYPE" 
    TCGA-55-1592     TCGA-55-1594     TCGA-55-1595     TCGA-55-1596 
"IL31 WILD-TYPE" "IL31 WILD-TYPE" "IL31 WILD-TYPE" "IL31 WILD-TYPE" 
    TCGA-55-5899     TCGA-55-6543     TCGA-55-6642     TCGA-55-6712 
"IL31 WILD-TYPE" "IL31 WILD-TYPE" "IL31 WILD-TYPE" "IL31 WILD-TYPE" 
    TCGA-64-1676     TCGA-64-1677     TCGA-64-1678     TCGA-64-1680 
"IL31 WILD-TYPE" "IL31 WILD-TYPE" "IL31 WILD-TYPE" "IL31 WILD-TYPE" 
    TCGA-64-5774     TCGA-64-5775     TCGA-64-5778     TCGA-64-5779 
"IL31 WILD-TYPE" "IL31 WILD-TYPE" "IL31 WILD-TYPE" "IL31 WILD-TYPE" 
    TCGA-64-5781     TCGA-64-5815     TCGA-67-3770     TCGA-67-3771 
"IL31 WILD-TYPE" "IL31 WILD-TYPE" "IL31 WILD-TYPE" "IL31 WILD-TYPE" 
    TCGA-67-3772     TCGA-67-3773     TCGA-67-3774     TCGA-67-6215 
"IL31 WILD-TYPE" "IL31 WILD-TYPE" "IL31 WILD-TYPE" "IL31 WILD-TYPE" 
    TCGA-67-6216     TCGA-67-6217     TCGA-71-6725     TCGA-73-4658 
  "IL31 MUTATED" "IL31 WILD-TYPE" "IL31 WILD-TYPE" "IL31 WILD-TYPE" 
    TCGA-73-4659     TCGA-73-4662     TCGA-73-4666     TCGA-73-4668 
"IL31 WILD-TYPE" "IL31 WILD-TYPE" "IL31 WILD-TYPE" "IL31 WILD-TYPE" 
    TCGA-73-4670     TCGA-73-4675     TCGA-73-4676     TCGA-73-4677 
"IL31 WILD-TYPE" "IL31 WILD-TYPE" "IL31 WILD-TYPE" "IL31 WILD-TYPE" 
    TCGA-91-6828     TCGA-91-6829     TCGA-91-6831     TCGA-91-6835 
  "IL31 MUTATED" "IL31 WILD-TYPE" "IL31 WILD-TYPE" "IL31 WILD-TYPE" 
    TCGA-91-6836 
"IL31 WILD-TYPE" 
[1] "Remove cluster labels:" "IL31 MUTATED"          
clus
  IL31 MUTATED IL31 WILD-TYPE 
             2            147 
    TCGA-05-4249     TCGA-05-4250     TCGA-05-4382     TCGA-05-4384 
"IL31 WILD-TYPE" "IL31 WILD-TYPE" "IL31 WILD-TYPE" "IL31 WILD-TYPE" 
    TCGA-05-4390     TCGA-05-4396     TCGA-05-4397     TCGA-05-4398 
"IL31 WILD-TYPE" "IL31 WILD-TYPE" "IL31 WILD-TYPE" "IL31 WILD-TYPE" 
    TCGA-05-4402     TCGA-05-4405     TCGA-05-4415     TCGA-05-4417 
"IL31 WILD-TYPE" "IL31 WILD-TYPE" "IL31 WILD-TYPE" "IL31 WILD-TYPE" 
    TCGA-05-4418     TCGA-05-4420     TCGA-05-4424     TCGA-05-4426 
"IL31 WILD-TYPE" "IL31 WILD-TYPE" "IL31 WILD-TYPE" "IL31 WILD-TYPE" 
    TCGA-05-4427     TCGA-05-4430     TCGA-05-4432     TCGA-05-4433 
"IL31 WILD-TYPE" "IL31 WILD-TYPE" "IL31 WILD-TYPE" "IL31 WILD-TYPE" 
    TCGA-05-4434     TCGA-05-5420     TCGA-05-5423     TCGA-05-5425 
"IL31 WILD-TYPE" "IL31 WILD-TYPE" "IL31 WILD-TYPE" "IL31 WILD-TYPE" 
    TCGA-05-5429     TCGA-05-5715     TCGA-35-3615     TCGA-35-4122 
"IL31 WILD-TYPE" "IL31 WILD-TYPE" "IL31 WILD-TYPE" "IL31 WILD-TYPE" 
    TCGA-35-4123     TCGA-35-5375     TCGA-38-4625     TCGA-38-4626 
"IL31 WILD-TYPE" "IL31 WILD-TYPE" "IL31 WILD-TYPE" "IL31 WILD-TYPE" 
    TCGA-38-4627     TCGA-38-4628     TCGA-38-4629     TCGA-38-4630 
"IL31 WILD-TYPE" "IL31 WILD-TYPE" "IL31 WILD-TYPE" "IL31 WILD-TYPE" 
    TCGA-38-4631     TCGA-38-4632     TCGA-38-6178     TCGA-44-2655 
"IL31 WILD-TYPE" "IL31 WILD-TYPE" "IL31 WILD-TYPE" "IL31 WILD-TYPE" 
    TCGA-44-2656     TCGA-44-2657     TCGA-44-2659     TCGA-44-2661 
"IL31 WILD-TYPE" "IL31 WILD-TYPE" "IL31 WILD-TYPE" "IL31 WILD-TYPE" 
    TCGA-44-2662     TCGA-44-2665     TCGA-44-2666     TCGA-44-2668 
"IL31 WILD-TYPE" "IL31 WILD-TYPE" "IL31 WILD-TYPE" "IL31 WILD-TYPE" 
    TCGA-44-3396     TCGA-44-3398     TCGA-44-3918     TCGA-44-3919 
"IL31 WILD-TYPE" "IL31 WILD-TYPE" "IL31 WILD-TYPE" "IL31 WILD-TYPE" 
    TCGA-44-4112     TCGA-44-5643     TCGA-44-5645     TCGA-44-6144 
"IL31 WILD-TYPE" "IL31 WILD-TYPE" "IL31 WILD-TYPE" "IL31 WILD-TYPE" 
    TCGA-44-6145     TCGA-44-6146     TCGA-44-6147     TCGA-44-6148 
"IL31 WILD-TYPE" "IL31 WILD-TYPE" "IL31 WILD-TYPE" "IL31 WILD-TYPE" 
    TCGA-44-6774     TCGA-44-6775     TCGA-44-6776     TCGA-44-6777 
"IL31 WILD-TYPE" "IL31 WILD-TYPE" "IL31 WILD-TYPE" "IL31 WILD-TYPE" 
    TCGA-44-6778     TCGA-44-6779     TCGA-49-4486     TCGA-49-4487 
"IL31 WILD-TYPE" "IL31 WILD-TYPE" "IL31 WILD-TYPE" "IL31 WILD-TYPE" 
    TCGA-49-4488     TCGA-49-4490     TCGA-49-4494     TCGA-49-4501 
"IL31 WILD-TYPE" "IL31 WILD-TYPE" "IL31 WILD-TYPE" "IL31 WILD-TYPE" 
    TCGA-49-4505     TCGA-49-4506     TCGA-49-4507     TCGA-49-4510 
"IL31 WILD-TYPE" "IL31 WILD-TYPE" "IL31 WILD-TYPE" "IL31 WILD-TYPE" 
    TCGA-49-4512     TCGA-49-4514     TCGA-49-6742     TCGA-49-6743 
"IL31 WILD-TYPE" "IL31 WILD-TYPE" "IL31 WILD-TYPE" "IL31 WILD-TYPE" 
    TCGA-49-6744     TCGA-49-6745     TCGA-50-5044     TCGA-50-5045 
"IL31 WILD-TYPE" "IL31 WILD-TYPE" "IL31 WILD-TYPE" "IL31 WILD-TYPE" 
    TCGA-50-5049     TCGA-50-5051     TCGA-50-5055     TCGA-50-5066 
"IL31 WILD-TYPE" "IL31 WILD-TYPE" "IL31 WILD-TYPE" "IL31 WILD-TYPE" 
    TCGA-50-5068     TCGA-50-5072     TCGA-50-5930     TCGA-50-5931 
"IL31 WILD-TYPE" "IL31 WILD-TYPE" "IL31 WILD-TYPE" "IL31 WILD-TYPE" 
    TCGA-50-5932     TCGA-50-5933     TCGA-50-5935     TCGA-50-5936 
"IL31 WILD-TYPE" "IL31 WILD-TYPE" "IL31 WILD-TYPE" "IL31 WILD-TYPE" 
    TCGA-50-5939     TCGA-50-5941     TCGA-50-5942     TCGA-50-5944 
"IL31 WILD-TYPE" "IL31 WILD-TYPE" "IL31 WILD-TYPE" "IL31 WILD-TYPE" 
    TCGA-50-5946     TCGA-50-6590     TCGA-50-6591     TCGA-50-6592 
"IL31 WILD-TYPE" "IL31 WILD-TYPE" "IL31 WILD-TYPE" "IL31 WILD-TYPE" 
    TCGA-50-6593     TCGA-50-6594     TCGA-50-6595     TCGA-50-6597 
"IL31 WILD-TYPE" "IL31 WILD-TYPE" "IL31 WILD-TYPE" "IL31 WILD-TYPE" 
    TCGA-55-1592     TCGA-55-1594     TCGA-55-1595     TCGA-55-1596 
"IL31 WILD-TYPE" "IL31 WILD-TYPE" "IL31 WILD-TYPE" "IL31 WILD-TYPE" 
    TCGA-55-5899     TCGA-55-6543     TCGA-55-6642     TCGA-55-6712 
"IL31 WILD-TYPE" "IL31 WILD-TYPE" "IL31 WILD-TYPE" "IL31 WILD-TYPE" 
    TCGA-64-1676     TCGA-64-1677     TCGA-64-1678     TCGA-64-1680 
"IL31 WILD-TYPE" "IL31 WILD-TYPE" "IL31 WILD-TYPE" "IL31 WILD-TYPE" 
    TCGA-64-5774     TCGA-64-5775     TCGA-64-5778     TCGA-64-5779 
"IL31 WILD-TYPE" "IL31 WILD-TYPE" "IL31 WILD-TYPE" "IL31 WILD-TYPE" 
    TCGA-64-5781     TCGA-64-5815     TCGA-67-3770     TCGA-67-3771 
"IL31 WILD-TYPE" "IL31 WILD-TYPE" "IL31 WILD-TYPE" "IL31 WILD-TYPE" 
    TCGA-67-3772     TCGA-67-3773     TCGA-67-3774     TCGA-67-6215 
"IL31 WILD-TYPE" "IL31 WILD-TYPE" "IL31 WILD-TYPE" "IL31 WILD-TYPE" 
    TCGA-67-6217     TCGA-71-6725     TCGA-73-4658     TCGA-73-4659 
"IL31 WILD-TYPE" "IL31 WILD-TYPE" "IL31 WILD-TYPE" "IL31 WILD-TYPE" 
    TCGA-73-4662     TCGA-73-4666     TCGA-73-4668     TCGA-73-4670 
"IL31 WILD-TYPE" "IL31 WILD-TYPE" "IL31 WILD-TYPE" "IL31 WILD-TYPE" 
    TCGA-73-4675     TCGA-73-4676     TCGA-73-4677     TCGA-91-6829 
"IL31 WILD-TYPE" "IL31 WILD-TYPE" "IL31 WILD-TYPE" "IL31 WILD-TYPE" 
    TCGA-91-6831     TCGA-91-6835     TCGA-91-6836 
"IL31 WILD-TYPE" "IL31 WILD-TYPE" "IL31 WILD-TYPE" 
D286V2, continuous
D286V3, binary
[1] "tbl2"
                cls
clus             [,1] [,2]
  IL31 MUTATED      1    2
  IL31 WILD-TYPE   92   77
        clus
vv       IL31 MUTATED IL31 WILD-TYPE
  FEMALE            1             92
  MALE              2             77
D286V4, continuous
D286V5, multiclass
D286V6, multiclass
    clus
vv   IL31 MUTATED IL31 WILD-TYPE
  T1            2             39
  T2            0            108
  T3            0             14
  T4            1              7
D286V7, multiclass
       clus
vv      IL31 MUTATED IL31 WILD-TYPE
  N0               2             93
  N1               0             37
  N2+N3            1             34
D286V8, multiclass
    clus
vv   IL31 MUTATED IL31 WILD-TYPE
  M0            2            135
  M1            0              9
  MX            1             21
D286V9, multiclass
     clus
vv    IL31 MUTATED IL31 WILD-TYPE
  I              2             86
  II             0             33
  III            1             38
  IV             0              9
D286V10, binary
[1] "tbl2"
                cls
clus             [,1] [,2]
  IL31 MUTATED      0    3
  IL31 WILD-TYPE   16  153
     clus
vv    IL31 MUTATED IL31 WILD-TYPE
  NO             0             16
  YES            3            153
D286V11, continuous
[1] "Remove cluster labels:" "IL31 MUTATED"          
clus
  IL31 MUTATED IL31 WILD-TYPE 
             1            113 
    TCGA-05-4244     TCGA-05-4249     TCGA-05-4250     TCGA-05-4382 
"IL31 WILD-TYPE" "IL31 WILD-TYPE" "IL31 WILD-TYPE" "IL31 WILD-TYPE" 
    TCGA-05-4384     TCGA-05-4389     TCGA-05-4390     TCGA-05-4396 
"IL31 WILD-TYPE" "IL31 WILD-TYPE" "IL31 WILD-TYPE" "IL31 WILD-TYPE" 
    TCGA-05-4397     TCGA-05-4398     TCGA-05-4402     TCGA-05-4405 
"IL31 WILD-TYPE" "IL31 WILD-TYPE" "IL31 WILD-TYPE" "IL31 WILD-TYPE" 
    TCGA-05-4410     TCGA-05-4415     TCGA-05-4417     TCGA-05-4418 
"IL31 WILD-TYPE" "IL31 WILD-TYPE" "IL31 WILD-TYPE" "IL31 WILD-TYPE" 
    TCGA-05-4420     TCGA-05-4422     TCGA-05-4424     TCGA-05-4425 
"IL31 WILD-TYPE" "IL31 WILD-TYPE" "IL31 WILD-TYPE" "IL31 WILD-TYPE" 
    TCGA-05-4426     TCGA-05-4427     TCGA-05-4430     TCGA-05-4432 
"IL31 WILD-TYPE" "IL31 WILD-TYPE" "IL31 WILD-TYPE" "IL31 WILD-TYPE" 
    TCGA-05-4433     TCGA-05-4434     TCGA-05-5420     TCGA-05-5423 
"IL31 WILD-TYPE" "IL31 WILD-TYPE" "IL31 WILD-TYPE" "IL31 WILD-TYPE" 
    TCGA-05-5425     TCGA-05-5428     TCGA-35-4122     TCGA-35-4123 
"IL31 WILD-TYPE" "IL31 WILD-TYPE" "IL31 WILD-TYPE" "IL31 WILD-TYPE" 
    TCGA-35-5375     TCGA-38-4625     TCGA-38-4626     TCGA-38-4629 
"IL31 WILD-TYPE" "IL31 WILD-TYPE" "IL31 WILD-TYPE" "IL31 WILD-TYPE" 
    TCGA-38-4631     TCGA-38-4632     TCGA-44-2655     TCGA-44-2656 
"IL31 WILD-TYPE" "IL31 WILD-TYPE" "IL31 WILD-TYPE" "IL31 WILD-TYPE" 
    TCGA-44-2657     TCGA-44-2659     TCGA-44-2662     TCGA-44-2666 
"IL31 WILD-TYPE" "IL31 WILD-TYPE" "IL31 WILD-TYPE" "IL31 WILD-TYPE" 
    TCGA-44-2668     TCGA-44-3396     TCGA-44-3398     TCGA-44-3918 
"IL31 WILD-TYPE" "IL31 WILD-TYPE" "IL31 WILD-TYPE" "IL31 WILD-TYPE" 
    TCGA-44-4112     TCGA-44-5643     TCGA-44-5645     TCGA-44-6144 
"IL31 WILD-TYPE" "IL31 WILD-TYPE" "IL31 WILD-TYPE" "IL31 WILD-TYPE" 
    TCGA-44-6145     TCGA-44-6146     TCGA-44-6148     TCGA-44-6774 
"IL31 WILD-TYPE" "IL31 WILD-TYPE" "IL31 WILD-TYPE" "IL31 WILD-TYPE" 
    TCGA-44-6775     TCGA-44-6776     TCGA-44-6777     TCGA-44-6778 
"IL31 WILD-TYPE" "IL31 WILD-TYPE" "IL31 WILD-TYPE" "IL31 WILD-TYPE" 
    TCGA-44-6779     TCGA-49-4486     TCGA-49-4487     TCGA-49-4490 
"IL31 WILD-TYPE" "IL31 WILD-TYPE" "IL31 WILD-TYPE" "IL31 WILD-TYPE" 
    TCGA-49-4494     TCGA-49-4505     TCGA-49-4506     TCGA-49-4507 
"IL31 WILD-TYPE" "IL31 WILD-TYPE" "IL31 WILD-TYPE" "IL31 WILD-TYPE" 
    TCGA-49-4510     TCGA-49-4514     TCGA-49-6742     TCGA-49-6743 
"IL31 WILD-TYPE" "IL31 WILD-TYPE" "IL31 WILD-TYPE" "IL31 WILD-TYPE" 
    TCGA-49-6744     TCGA-49-6745     TCGA-49-6767     TCGA-50-5051 
"IL31 WILD-TYPE" "IL31 WILD-TYPE" "IL31 WILD-TYPE" "IL31 WILD-TYPE" 
    TCGA-50-5072     TCGA-50-5931     TCGA-50-5939     TCGA-50-5941 
"IL31 WILD-TYPE" "IL31 WILD-TYPE" "IL31 WILD-TYPE" "IL31 WILD-TYPE" 
    TCGA-50-5942     TCGA-50-6590     TCGA-55-1596     TCGA-55-6543 
"IL31 WILD-TYPE" "IL31 WILD-TYPE" "IL31 WILD-TYPE" "IL31 WILD-TYPE" 
    TCGA-64-1676     TCGA-64-1677     TCGA-64-1678     TCGA-64-1680 
"IL31 WILD-TYPE" "IL31 WILD-TYPE" "IL31 WILD-TYPE" "IL31 WILD-TYPE" 
    TCGA-64-5774     TCGA-64-5775     TCGA-64-5778     TCGA-64-5779 
"IL31 WILD-TYPE" "IL31 WILD-TYPE" "IL31 WILD-TYPE" "IL31 WILD-TYPE" 
    TCGA-64-5781     TCGA-64-5815     TCGA-73-4658     TCGA-73-4659 
"IL31 WILD-TYPE" "IL31 WILD-TYPE" "IL31 WILD-TYPE" "IL31 WILD-TYPE" 
    TCGA-73-4662     TCGA-73-4666     TCGA-73-4668     TCGA-73-4670 
"IL31 WILD-TYPE" "IL31 WILD-TYPE" "IL31 WILD-TYPE" "IL31 WILD-TYPE" 
    TCGA-73-4675     TCGA-73-4676     TCGA-75-5122     TCGA-75-5125 
"IL31 WILD-TYPE" "IL31 WILD-TYPE" "IL31 WILD-TYPE" "IL31 WILD-TYPE" 
    TCGA-75-5126     TCGA-75-6203     TCGA-75-6206     TCGA-75-6207 
"IL31 WILD-TYPE" "IL31 WILD-TYPE" "IL31 WILD-TYPE" "IL31 WILD-TYPE" 
    TCGA-75-6211     TCGA-80-5611     TCGA-91-6829     TCGA-91-6835 
"IL31 WILD-TYPE" "IL31 WILD-TYPE" "IL31 WILD-TYPE" "IL31 WILD-TYPE" 
    TCGA-91-6836 
"IL31 WILD-TYPE" 
D286V12, continuous
[1] "Remove cluster labels:" "IL31 MUTATED"          
clus
  IL31 MUTATED IL31 WILD-TYPE 
             1             81 
    TCGA-05-4384     TCGA-05-4390     TCGA-05-4396     TCGA-05-4403 
"IL31 WILD-TYPE" "IL31 WILD-TYPE" "IL31 WILD-TYPE" "IL31 WILD-TYPE" 
    TCGA-05-4405     TCGA-05-4410     TCGA-05-4415     TCGA-05-4417 
"IL31 WILD-TYPE" "IL31 WILD-TYPE" "IL31 WILD-TYPE" "IL31 WILD-TYPE" 
    TCGA-05-4424     TCGA-05-4427     TCGA-05-4433     TCGA-05-5420 
"IL31 WILD-TYPE" "IL31 WILD-TYPE" "IL31 WILD-TYPE" "IL31 WILD-TYPE" 
    TCGA-05-5423     TCGA-05-5425     TCGA-05-5428     TCGA-35-4122 
"IL31 WILD-TYPE" "IL31 WILD-TYPE" "IL31 WILD-TYPE" "IL31 WILD-TYPE" 
    TCGA-35-4123     TCGA-35-5375     TCGA-38-4629     TCGA-38-4632 
"IL31 WILD-TYPE" "IL31 WILD-TYPE" "IL31 WILD-TYPE" "IL31 WILD-TYPE" 
    TCGA-44-2655     TCGA-44-2656     TCGA-44-2657     TCGA-44-2659 
"IL31 WILD-TYPE" "IL31 WILD-TYPE" "IL31 WILD-TYPE" "IL31 WILD-TYPE" 
    TCGA-44-2662     TCGA-44-2668     TCGA-44-3398     TCGA-44-3918 
"IL31 WILD-TYPE" "IL31 WILD-TYPE" "IL31 WILD-TYPE" "IL31 WILD-TYPE" 
    TCGA-44-4112     TCGA-44-5645     TCGA-44-6145     TCGA-44-6146 
"IL31 WILD-TYPE" "IL31 WILD-TYPE" "IL31 WILD-TYPE" "IL31 WILD-TYPE" 
    TCGA-44-6147     TCGA-44-6148     TCGA-44-6775     TCGA-44-6776 
"IL31 WILD-TYPE" "IL31 WILD-TYPE" "IL31 WILD-TYPE" "IL31 WILD-TYPE" 
    TCGA-44-6777     TCGA-44-6778     TCGA-44-6779     TCGA-49-4486 
"IL31 WILD-TYPE" "IL31 WILD-TYPE" "IL31 WILD-TYPE" "IL31 WILD-TYPE" 
    TCGA-49-4488     TCGA-49-4494     TCGA-49-4505     TCGA-49-4507 
"IL31 WILD-TYPE" "IL31 WILD-TYPE" "IL31 WILD-TYPE" "IL31 WILD-TYPE" 
    TCGA-50-5051     TCGA-50-5072     TCGA-50-5939     TCGA-50-5942 
"IL31 WILD-TYPE" "IL31 WILD-TYPE" "IL31 WILD-TYPE" "IL31 WILD-TYPE" 
    TCGA-50-5946     TCGA-50-6590     TCGA-50-6594     TCGA-50-6595 
"IL31 WILD-TYPE" "IL31 WILD-TYPE" "IL31 WILD-TYPE" "IL31 WILD-TYPE" 
    TCGA-55-1592     TCGA-55-1595     TCGA-55-6543     TCGA-55-6712 
"IL31 WILD-TYPE" "IL31 WILD-TYPE" "IL31 WILD-TYPE" "IL31 WILD-TYPE" 
    TCGA-64-1678     TCGA-64-1680     TCGA-64-5774     TCGA-64-5778 
"IL31 WILD-TYPE" "IL31 WILD-TYPE" "IL31 WILD-TYPE" "IL31 WILD-TYPE" 
    TCGA-64-5779     TCGA-64-5781     TCGA-64-5815     TCGA-67-6217 
"IL31 WILD-TYPE" "IL31 WILD-TYPE" "IL31 WILD-TYPE" "IL31 WILD-TYPE" 
    TCGA-73-4659     TCGA-73-4662     TCGA-73-4666     TCGA-73-4668 
"IL31 WILD-TYPE" "IL31 WILD-TYPE" "IL31 WILD-TYPE" "IL31 WILD-TYPE" 
    TCGA-73-4670     TCGA-73-4675     TCGA-73-4676     TCGA-73-4677 
"IL31 WILD-TYPE" "IL31 WILD-TYPE" "IL31 WILD-TYPE" "IL31 WILD-TYPE" 
    TCGA-75-5122     TCGA-75-5125     TCGA-75-5126     TCGA-75-5146 
"IL31 WILD-TYPE" "IL31 WILD-TYPE" "IL31 WILD-TYPE" "IL31 WILD-TYPE" 
    TCGA-75-6206     TCGA-75-6207     TCGA-80-5611     TCGA-91-6829 
"IL31 WILD-TYPE" "IL31 WILD-TYPE" "IL31 WILD-TYPE" "IL31 WILD-TYPE" 
    TCGA-91-6835 
"IL31 WILD-TYPE" 
D286V13, multiclass
                                             clus
vv                                            IL31 MUTATED IL31 WILD-TYPE
  CURRENT REFORMED SMOKER FOR < OR = 15 YEARS            0             62
  CURRENT REFORMED SMOKER FOR > 15 YEARS                 1             45
  CURRENT SMOKER                                         0             28
  LIFELONG NON-SMOKER                                    2             22
D286V14, continuous

Clustering(287) Variable = LRRTM3 MUTATION ANALYSIS
D287V1, survival
                  sevent
clus2               0  1
  LRRTM3 MUTATED    4  2
  LRRTM3 WILD-TYPE 95 48
  LRRTM3 MUTATED LRRTM3 WILD-TYPE 
               6              143 
  LRRTM3 MUTATED LRRTM3 WILD-TYPE 
               2               48 
$`LRRTM3 MUTATED`
TCGA-05-4396 TCGA-44-4112 TCGA-44-6775 TCGA-50-5939 TCGA-64-1678 TCGA-91-6831 
        9.96         4.60         2.70        15.12        39.09         1.28 

$`LRRTM3 WILD-TYPE`
TCGA-05-4249 TCGA-05-4250 TCGA-05-4382 TCGA-05-4384 TCGA-05-4390 TCGA-05-4397 
       38.07         3.98        19.92        14.01        37.02        24.03 
TCGA-05-4398 TCGA-05-4402 TCGA-05-4405 TCGA-05-4415 TCGA-05-4417 TCGA-05-4418 
       47.05         8.02        20.05         2.96        14.93         8.98 
TCGA-05-4420 TCGA-05-4424 TCGA-05-4426 TCGA-05-4427 TCGA-05-4430 TCGA-05-4432 
       29.95        30.02        26.01        26.01        25.02        25.02 
TCGA-05-4433 TCGA-05-4434 TCGA-05-5420 TCGA-05-5423 TCGA-05-5425 TCGA-05-5429 
       24.00        15.02         1.02         4.96         2.96         0.99 
TCGA-05-5715 TCGA-35-3615 TCGA-35-4122 TCGA-35-4123 TCGA-35-5375 TCGA-38-4625 
        2.04         0.46         7.36         5.95         8.68        47.61 
TCGA-38-4626 TCGA-38-4627 TCGA-38-4628 TCGA-38-4629 TCGA-38-4630 TCGA-38-4631 
       85.32        37.71        49.02        28.37        35.28        11.64 
TCGA-38-4632 TCGA-38-6178 TCGA-44-2655 TCGA-44-2656 TCGA-44-2657 TCGA-44-2659 
       44.61         5.19        18.87        19.10        13.15        17.39 
TCGA-44-2661 TCGA-44-2662 TCGA-44-2665 TCGA-44-2666 TCGA-44-2668 TCGA-44-3396 
        3.39        15.78        13.15         3.19         8.09        10.22 
TCGA-44-3398 TCGA-44-3918 TCGA-44-3919 TCGA-44-5643 TCGA-44-5645 TCGA-44-6144 
        8.32         6.44         6.21         3.48         6.84         0.30 
TCGA-44-6145 TCGA-44-6146 TCGA-44-6147 TCGA-44-6148 TCGA-44-6774 TCGA-44-6776 
        3.35         9.93         7.76         3.12         5.42        63.72 
TCGA-44-6777 TCGA-44-6778 TCGA-44-6779 TCGA-49-4486 TCGA-49-4487 TCGA-49-4488 
       32.45        36.49        16.41        76.21        28.11        28.57 
TCGA-49-4490 TCGA-49-4494 TCGA-49-4501 TCGA-49-4505 TCGA-49-4506 TCGA-49-4507 
       12.66        35.54        46.72        14.07        32.84         8.81 
TCGA-49-4510 TCGA-49-4512 TCGA-49-4514 TCGA-49-6742 TCGA-49-6743 TCGA-49-6744 
       29.46        29.75        43.20        15.02        12.13        12.99 
TCGA-49-6745 TCGA-50-5044 TCGA-50-5045 TCGA-50-5049 TCGA-50-5051 TCGA-50-5055 
        4.93        20.48        71.47        48.82        14.96        25.81 
TCGA-50-5066 TCGA-50-5068 TCGA-50-5072 TCGA-50-5930 TCGA-50-5931 TCGA-50-5932 
        9.76        49.28         8.05         9.27         8.78        35.87 
TCGA-50-5933 TCGA-50-5935 TCGA-50-5936 TCGA-50-5941 TCGA-50-5942 TCGA-50-5944 
       77.88        21.47         8.45         9.37         4.44        12.26 
TCGA-50-5946 TCGA-50-6590 TCGA-50-6591 TCGA-50-6592 TCGA-50-6593 TCGA-50-6594 
       11.47        42.31         3.88        25.51        11.05        12.16 
TCGA-50-6595 TCGA-50-6597 TCGA-55-1592 TCGA-55-1594 TCGA-55-1595 TCGA-55-1596 
        6.21        33.37        23.05        38.73        48.62        45.17 
TCGA-55-5899 TCGA-55-6543 TCGA-55-6642 TCGA-55-6712 TCGA-64-1676 TCGA-64-1677 
        2.86         0.07        32.61         0.79        56.81        20.65 
TCGA-64-1680 TCGA-64-5774 TCGA-64-5775 TCGA-64-5778 TCGA-64-5779 TCGA-64-5781 
       37.02        83.84         0.10        30.44        16.67        39.52 
TCGA-64-5815 TCGA-67-3770 TCGA-67-3771 TCGA-67-3772 TCGA-67-3773 TCGA-67-3774 
        7.33         0.99         1.97         0.59         2.04         0.59 
TCGA-67-6215 TCGA-67-6216 TCGA-67-6217 TCGA-71-6725 TCGA-73-4658 TCGA-73-4659 
        0.89         0.69        13.87         2.01        52.57        23.38 
TCGA-73-4662 TCGA-73-4666 TCGA-73-4668 TCGA-73-4670 TCGA-73-4675 TCGA-73-4676 
       29.95        20.28        15.35         0.46         1.32         4.01 
TCGA-73-4677 TCGA-91-6828 TCGA-91-6829 TCGA-91-6835 TCGA-91-6836 
        1.25         1.22        41.33         1.15         0.36 

  LRRTM3 MUTATED LRRTM3 WILD-TYPE 
            1.28             0.07 
  LRRTM3 MUTATED LRRTM3 WILD-TYPE 
           39.09            85.32 
  LRRTM3 MUTATED LRRTM3 WILD-TYPE 
            7.28            14.01 
[1] "1.3 - 39.1 (7.3)"  "0.1 - 85.3 (14.0)"
      TCGA-05-4249       TCGA-05-4250       TCGA-05-4382       TCGA-05-4384 
"LRRTM3 WILD-TYPE" "LRRTM3 WILD-TYPE" "LRRTM3 WILD-TYPE" "LRRTM3 WILD-TYPE" 
      TCGA-05-4390       TCGA-05-4396       TCGA-05-4397       TCGA-05-4398 
"LRRTM3 WILD-TYPE"   "LRRTM3 MUTATED" "LRRTM3 WILD-TYPE" "LRRTM3 WILD-TYPE" 
      TCGA-05-4402       TCGA-05-4405       TCGA-05-4415       TCGA-05-4417 
"LRRTM3 WILD-TYPE" "LRRTM3 WILD-TYPE" "LRRTM3 WILD-TYPE" "LRRTM3 WILD-TYPE" 
      TCGA-05-4418       TCGA-05-4420       TCGA-05-4424       TCGA-05-4426 
"LRRTM3 WILD-TYPE" "LRRTM3 WILD-TYPE" "LRRTM3 WILD-TYPE" "LRRTM3 WILD-TYPE" 
      TCGA-05-4427       TCGA-05-4430       TCGA-05-4432       TCGA-05-4433 
"LRRTM3 WILD-TYPE" "LRRTM3 WILD-TYPE" "LRRTM3 WILD-TYPE" "LRRTM3 WILD-TYPE" 
      TCGA-05-4434       TCGA-05-5420       TCGA-05-5423       TCGA-05-5425 
"LRRTM3 WILD-TYPE" "LRRTM3 WILD-TYPE" "LRRTM3 WILD-TYPE" "LRRTM3 WILD-TYPE" 
      TCGA-05-5429       TCGA-05-5715       TCGA-35-3615       TCGA-35-4122 
"LRRTM3 WILD-TYPE" "LRRTM3 WILD-TYPE" "LRRTM3 WILD-TYPE" "LRRTM3 WILD-TYPE" 
      TCGA-35-4123       TCGA-35-5375       TCGA-38-4625       TCGA-38-4626 
"LRRTM3 WILD-TYPE" "LRRTM3 WILD-TYPE" "LRRTM3 WILD-TYPE" "LRRTM3 WILD-TYPE" 
      TCGA-38-4627       TCGA-38-4628       TCGA-38-4629       TCGA-38-4630 
"LRRTM3 WILD-TYPE" "LRRTM3 WILD-TYPE" "LRRTM3 WILD-TYPE" "LRRTM3 WILD-TYPE" 
      TCGA-38-4631       TCGA-38-4632       TCGA-38-6178       TCGA-44-2655 
"LRRTM3 WILD-TYPE" "LRRTM3 WILD-TYPE" "LRRTM3 WILD-TYPE" "LRRTM3 WILD-TYPE" 
      TCGA-44-2656       TCGA-44-2657       TCGA-44-2659       TCGA-44-2661 
"LRRTM3 WILD-TYPE" "LRRTM3 WILD-TYPE" "LRRTM3 WILD-TYPE" "LRRTM3 WILD-TYPE" 
      TCGA-44-2662       TCGA-44-2665       TCGA-44-2666       TCGA-44-2668 
"LRRTM3 WILD-TYPE" "LRRTM3 WILD-TYPE" "LRRTM3 WILD-TYPE" "LRRTM3 WILD-TYPE" 
      TCGA-44-3396       TCGA-44-3398       TCGA-44-3918       TCGA-44-3919 
"LRRTM3 WILD-TYPE" "LRRTM3 WILD-TYPE" "LRRTM3 WILD-TYPE" "LRRTM3 WILD-TYPE" 
      TCGA-44-4112       TCGA-44-5643       TCGA-44-5645       TCGA-44-6144 
  "LRRTM3 MUTATED" "LRRTM3 WILD-TYPE" "LRRTM3 WILD-TYPE" "LRRTM3 WILD-TYPE" 
      TCGA-44-6145       TCGA-44-6146       TCGA-44-6147       TCGA-44-6148 
"LRRTM3 WILD-TYPE" "LRRTM3 WILD-TYPE" "LRRTM3 WILD-TYPE" "LRRTM3 WILD-TYPE" 
      TCGA-44-6774       TCGA-44-6775       TCGA-44-6776       TCGA-44-6777 
"LRRTM3 WILD-TYPE"   "LRRTM3 MUTATED" "LRRTM3 WILD-TYPE" "LRRTM3 WILD-TYPE" 
      TCGA-44-6778       TCGA-44-6779       TCGA-49-4486       TCGA-49-4487 
"LRRTM3 WILD-TYPE" "LRRTM3 WILD-TYPE" "LRRTM3 WILD-TYPE" "LRRTM3 WILD-TYPE" 
      TCGA-49-4488       TCGA-49-4490       TCGA-49-4494       TCGA-49-4501 
"LRRTM3 WILD-TYPE" "LRRTM3 WILD-TYPE" "LRRTM3 WILD-TYPE" "LRRTM3 WILD-TYPE" 
      TCGA-49-4505       TCGA-49-4506       TCGA-49-4507       TCGA-49-4510 
"LRRTM3 WILD-TYPE" "LRRTM3 WILD-TYPE" "LRRTM3 WILD-TYPE" "LRRTM3 WILD-TYPE" 
      TCGA-49-4512       TCGA-49-4514       TCGA-49-6742       TCGA-49-6743 
"LRRTM3 WILD-TYPE" "LRRTM3 WILD-TYPE" "LRRTM3 WILD-TYPE" "LRRTM3 WILD-TYPE" 
      TCGA-49-6744       TCGA-49-6745       TCGA-50-5044       TCGA-50-5045 
"LRRTM3 WILD-TYPE" "LRRTM3 WILD-TYPE" "LRRTM3 WILD-TYPE" "LRRTM3 WILD-TYPE" 
      TCGA-50-5049       TCGA-50-5051       TCGA-50-5055       TCGA-50-5066 
"LRRTM3 WILD-TYPE" "LRRTM3 WILD-TYPE" "LRRTM3 WILD-TYPE" "LRRTM3 WILD-TYPE" 
      TCGA-50-5068       TCGA-50-5072       TCGA-50-5930       TCGA-50-5931 
"LRRTM3 WILD-TYPE" "LRRTM3 WILD-TYPE" "LRRTM3 WILD-TYPE" "LRRTM3 WILD-TYPE" 
      TCGA-50-5932       TCGA-50-5933       TCGA-50-5935       TCGA-50-5936 
"LRRTM3 WILD-TYPE" "LRRTM3 WILD-TYPE" "LRRTM3 WILD-TYPE" "LRRTM3 WILD-TYPE" 
      TCGA-50-5939       TCGA-50-5941       TCGA-50-5942       TCGA-50-5944 
  "LRRTM3 MUTATED" "LRRTM3 WILD-TYPE" "LRRTM3 WILD-TYPE" "LRRTM3 WILD-TYPE" 
      TCGA-50-5946       TCGA-50-6590       TCGA-50-6591       TCGA-50-6592 
"LRRTM3 WILD-TYPE" "LRRTM3 WILD-TYPE" "LRRTM3 WILD-TYPE" "LRRTM3 WILD-TYPE" 
      TCGA-50-6593       TCGA-50-6594       TCGA-50-6595       TCGA-50-6597 
"LRRTM3 WILD-TYPE" "LRRTM3 WILD-TYPE" "LRRTM3 WILD-TYPE" "LRRTM3 WILD-TYPE" 
      TCGA-55-1592       TCGA-55-1594       TCGA-55-1595       TCGA-55-1596 
"LRRTM3 WILD-TYPE" "LRRTM3 WILD-TYPE" "LRRTM3 WILD-TYPE" "LRRTM3 WILD-TYPE" 
      TCGA-55-5899       TCGA-55-6543       TCGA-55-6642       TCGA-55-6712 
"LRRTM3 WILD-TYPE" "LRRTM3 WILD-TYPE" "LRRTM3 WILD-TYPE" "LRRTM3 WILD-TYPE" 
      TCGA-64-1676       TCGA-64-1677       TCGA-64-1678       TCGA-64-1680 
"LRRTM3 WILD-TYPE" "LRRTM3 WILD-TYPE"   "LRRTM3 MUTATED" "LRRTM3 WILD-TYPE" 
      TCGA-64-5774       TCGA-64-5775       TCGA-64-5778       TCGA-64-5779 
"LRRTM3 WILD-TYPE" "LRRTM3 WILD-TYPE" "LRRTM3 WILD-TYPE" "LRRTM3 WILD-TYPE" 
      TCGA-64-5781       TCGA-64-5815       TCGA-67-3770       TCGA-67-3771 
"LRRTM3 WILD-TYPE" "LRRTM3 WILD-TYPE" "LRRTM3 WILD-TYPE" "LRRTM3 WILD-TYPE" 
      TCGA-67-3772       TCGA-67-3773       TCGA-67-3774       TCGA-67-6215 
"LRRTM3 WILD-TYPE" "LRRTM3 WILD-TYPE" "LRRTM3 WILD-TYPE" "LRRTM3 WILD-TYPE" 
      TCGA-67-6216       TCGA-67-6217       TCGA-71-6725       TCGA-73-4658 
"LRRTM3 WILD-TYPE" "LRRTM3 WILD-TYPE" "LRRTM3 WILD-TYPE" "LRRTM3 WILD-TYPE" 
      TCGA-73-4659       TCGA-73-4662       TCGA-73-4666       TCGA-73-4668 
"LRRTM3 WILD-TYPE" "LRRTM3 WILD-TYPE" "LRRTM3 WILD-TYPE" "LRRTM3 WILD-TYPE" 
      TCGA-73-4670       TCGA-73-4675       TCGA-73-4676       TCGA-73-4677 
"LRRTM3 WILD-TYPE" "LRRTM3 WILD-TYPE" "LRRTM3 WILD-TYPE" "LRRTM3 WILD-TYPE" 
      TCGA-91-6828       TCGA-91-6829       TCGA-91-6831       TCGA-91-6835 
"LRRTM3 WILD-TYPE" "LRRTM3 WILD-TYPE"   "LRRTM3 MUTATED" "LRRTM3 WILD-TYPE" 
      TCGA-91-6836 
"LRRTM3 WILD-TYPE" 
      TCGA-05-4249       TCGA-05-4250       TCGA-05-4382       TCGA-05-4384 
"LRRTM3 WILD-TYPE" "LRRTM3 WILD-TYPE" "LRRTM3 WILD-TYPE" "LRRTM3 WILD-TYPE" 
      TCGA-05-4390       TCGA-05-4396       TCGA-05-4397       TCGA-05-4398 
"LRRTM3 WILD-TYPE"   "LRRTM3 MUTATED" "LRRTM3 WILD-TYPE" "LRRTM3 WILD-TYPE" 
      TCGA-05-4402       TCGA-05-4405       TCGA-05-4415       TCGA-05-4417 
"LRRTM3 WILD-TYPE" "LRRTM3 WILD-TYPE" "LRRTM3 WILD-TYPE" "LRRTM3 WILD-TYPE" 
      TCGA-05-4418       TCGA-05-4420       TCGA-05-4424       TCGA-05-4426 
"LRRTM3 WILD-TYPE" "LRRTM3 WILD-TYPE" "LRRTM3 WILD-TYPE" "LRRTM3 WILD-TYPE" 
      TCGA-05-4427       TCGA-05-4430       TCGA-05-4432       TCGA-05-4433 
"LRRTM3 WILD-TYPE" "LRRTM3 WILD-TYPE" "LRRTM3 WILD-TYPE" "LRRTM3 WILD-TYPE" 
      TCGA-05-4434       TCGA-05-5420       TCGA-05-5423       TCGA-05-5425 
"LRRTM3 WILD-TYPE" "LRRTM3 WILD-TYPE" "LRRTM3 WILD-TYPE" "LRRTM3 WILD-TYPE" 
      TCGA-05-5429       TCGA-05-5715       TCGA-35-3615       TCGA-35-4122 
"LRRTM3 WILD-TYPE" "LRRTM3 WILD-TYPE" "LRRTM3 WILD-TYPE" "LRRTM3 WILD-TYPE" 
      TCGA-35-4123       TCGA-35-5375       TCGA-38-4625       TCGA-38-4626 
"LRRTM3 WILD-TYPE" "LRRTM3 WILD-TYPE" "LRRTM3 WILD-TYPE" "LRRTM3 WILD-TYPE" 
      TCGA-38-4627       TCGA-38-4628       TCGA-38-4629       TCGA-38-4630 
"LRRTM3 WILD-TYPE" "LRRTM3 WILD-TYPE" "LRRTM3 WILD-TYPE" "LRRTM3 WILD-TYPE" 
      TCGA-38-4631       TCGA-38-4632       TCGA-38-6178       TCGA-44-2655 
"LRRTM3 WILD-TYPE" "LRRTM3 WILD-TYPE" "LRRTM3 WILD-TYPE" "LRRTM3 WILD-TYPE" 
      TCGA-44-2656       TCGA-44-2657       TCGA-44-2659       TCGA-44-2661 
"LRRTM3 WILD-TYPE" "LRRTM3 WILD-TYPE" "LRRTM3 WILD-TYPE" "LRRTM3 WILD-TYPE" 
      TCGA-44-2662       TCGA-44-2665       TCGA-44-2666       TCGA-44-2668 
"LRRTM3 WILD-TYPE" "LRRTM3 WILD-TYPE" "LRRTM3 WILD-TYPE" "LRRTM3 WILD-TYPE" 
      TCGA-44-3396       TCGA-44-3398       TCGA-44-3918       TCGA-44-3919 
"LRRTM3 WILD-TYPE" "LRRTM3 WILD-TYPE" "LRRTM3 WILD-TYPE" "LRRTM3 WILD-TYPE" 
      TCGA-44-4112       TCGA-44-5643       TCGA-44-5645       TCGA-44-6144 
  "LRRTM3 MUTATED" "LRRTM3 WILD-TYPE" "LRRTM3 WILD-TYPE" "LRRTM3 WILD-TYPE" 
      TCGA-44-6145       TCGA-44-6146       TCGA-44-6147       TCGA-44-6148 
"LRRTM3 WILD-TYPE" "LRRTM3 WILD-TYPE" "LRRTM3 WILD-TYPE" "LRRTM3 WILD-TYPE" 
      TCGA-44-6774       TCGA-44-6775       TCGA-44-6776       TCGA-44-6777 
"LRRTM3 WILD-TYPE"   "LRRTM3 MUTATED" "LRRTM3 WILD-TYPE" "LRRTM3 WILD-TYPE" 
      TCGA-44-6778       TCGA-44-6779       TCGA-49-4486       TCGA-49-4487 
"LRRTM3 WILD-TYPE" "LRRTM3 WILD-TYPE" "LRRTM3 WILD-TYPE" "LRRTM3 WILD-TYPE" 
      TCGA-49-4488       TCGA-49-4490       TCGA-49-4494       TCGA-49-4501 
"LRRTM3 WILD-TYPE" "LRRTM3 WILD-TYPE" "LRRTM3 WILD-TYPE" "LRRTM3 WILD-TYPE" 
      TCGA-49-4505       TCGA-49-4506       TCGA-49-4507       TCGA-49-4510 
"LRRTM3 WILD-TYPE" "LRRTM3 WILD-TYPE" "LRRTM3 WILD-TYPE" "LRRTM3 WILD-TYPE" 
      TCGA-49-4512       TCGA-49-4514       TCGA-49-6742       TCGA-49-6743 
"LRRTM3 WILD-TYPE" "LRRTM3 WILD-TYPE" "LRRTM3 WILD-TYPE" "LRRTM3 WILD-TYPE" 
      TCGA-49-6744       TCGA-49-6745       TCGA-50-5044       TCGA-50-5045 
"LRRTM3 WILD-TYPE" "LRRTM3 WILD-TYPE" "LRRTM3 WILD-TYPE" "LRRTM3 WILD-TYPE" 
      TCGA-50-5049       TCGA-50-5051       TCGA-50-5055       TCGA-50-5066 
"LRRTM3 WILD-TYPE" "LRRTM3 WILD-TYPE" "LRRTM3 WILD-TYPE" "LRRTM3 WILD-TYPE" 
      TCGA-50-5068       TCGA-50-5072       TCGA-50-5930       TCGA-50-5931 
"LRRTM3 WILD-TYPE" "LRRTM3 WILD-TYPE" "LRRTM3 WILD-TYPE" "LRRTM3 WILD-TYPE" 
      TCGA-50-5932       TCGA-50-5933       TCGA-50-5935       TCGA-50-5936 
"LRRTM3 WILD-TYPE" "LRRTM3 WILD-TYPE" "LRRTM3 WILD-TYPE" "LRRTM3 WILD-TYPE" 
      TCGA-50-5939       TCGA-50-5941       TCGA-50-5942       TCGA-50-5944 
  "LRRTM3 MUTATED" "LRRTM3 WILD-TYPE" "LRRTM3 WILD-TYPE" "LRRTM3 WILD-TYPE" 
      TCGA-50-5946       TCGA-50-6590       TCGA-50-6591       TCGA-50-6592 
"LRRTM3 WILD-TYPE" "LRRTM3 WILD-TYPE" "LRRTM3 WILD-TYPE" "LRRTM3 WILD-TYPE" 
      TCGA-50-6593       TCGA-50-6594       TCGA-50-6595       TCGA-50-6597 
"LRRTM3 WILD-TYPE" "LRRTM3 WILD-TYPE" "LRRTM3 WILD-TYPE" "LRRTM3 WILD-TYPE" 
      TCGA-55-1592       TCGA-55-1594       TCGA-55-1595       TCGA-55-1596 
"LRRTM3 WILD-TYPE" "LRRTM3 WILD-TYPE" "LRRTM3 WILD-TYPE" "LRRTM3 WILD-TYPE" 
      TCGA-55-5899       TCGA-55-6543       TCGA-55-6642       TCGA-55-6712 
"LRRTM3 WILD-TYPE" "LRRTM3 WILD-TYPE" "LRRTM3 WILD-TYPE" "LRRTM3 WILD-TYPE" 
      TCGA-64-1676       TCGA-64-1677       TCGA-64-1678       TCGA-64-1680 
"LRRTM3 WILD-TYPE" "LRRTM3 WILD-TYPE"   "LRRTM3 MUTATED" "LRRTM3 WILD-TYPE" 
      TCGA-64-5774       TCGA-64-5775       TCGA-64-5778       TCGA-64-5779 
"LRRTM3 WILD-TYPE" "LRRTM3 WILD-TYPE" "LRRTM3 WILD-TYPE" "LRRTM3 WILD-TYPE" 
      TCGA-64-5781       TCGA-64-5815       TCGA-67-3770       TCGA-67-3771 
"LRRTM3 WILD-TYPE" "LRRTM3 WILD-TYPE" "LRRTM3 WILD-TYPE" "LRRTM3 WILD-TYPE" 
      TCGA-67-3772       TCGA-67-3773       TCGA-67-3774       TCGA-67-6215 
"LRRTM3 WILD-TYPE" "LRRTM3 WILD-TYPE" "LRRTM3 WILD-TYPE" "LRRTM3 WILD-TYPE" 
      TCGA-67-6216       TCGA-67-6217       TCGA-71-6725       TCGA-73-4658 
"LRRTM3 WILD-TYPE" "LRRTM3 WILD-TYPE" "LRRTM3 WILD-TYPE" "LRRTM3 WILD-TYPE" 
      TCGA-73-4659       TCGA-73-4662       TCGA-73-4666       TCGA-73-4668 
"LRRTM3 WILD-TYPE" "LRRTM3 WILD-TYPE" "LRRTM3 WILD-TYPE" "LRRTM3 WILD-TYPE" 
      TCGA-73-4670       TCGA-73-4675       TCGA-73-4676       TCGA-73-4677 
"LRRTM3 WILD-TYPE" "LRRTM3 WILD-TYPE" "LRRTM3 WILD-TYPE" "LRRTM3 WILD-TYPE" 
      TCGA-91-6828       TCGA-91-6829       TCGA-91-6831       TCGA-91-6835 
"LRRTM3 WILD-TYPE" "LRRTM3 WILD-TYPE"   "LRRTM3 MUTATED" "LRRTM3 WILD-TYPE" 
      TCGA-91-6836 
"LRRTM3 WILD-TYPE" 
      TCGA-05-4249       TCGA-05-4250       TCGA-05-4382       TCGA-05-4384 
"LRRTM3 WILD-TYPE" "LRRTM3 WILD-TYPE" "LRRTM3 WILD-TYPE" "LRRTM3 WILD-TYPE" 
      TCGA-05-4390       TCGA-05-4396       TCGA-05-4397       TCGA-05-4398 
"LRRTM3 WILD-TYPE"   "LRRTM3 MUTATED" "LRRTM3 WILD-TYPE" "LRRTM3 WILD-TYPE" 
      TCGA-05-4402       TCGA-05-4405       TCGA-05-4415       TCGA-05-4417 
"LRRTM3 WILD-TYPE" "LRRTM3 WILD-TYPE" "LRRTM3 WILD-TYPE" "LRRTM3 WILD-TYPE" 
      TCGA-05-4418       TCGA-05-4420       TCGA-05-4424       TCGA-05-4426 
"LRRTM3 WILD-TYPE" "LRRTM3 WILD-TYPE" "LRRTM3 WILD-TYPE" "LRRTM3 WILD-TYPE" 
      TCGA-05-4427       TCGA-05-4430       TCGA-05-4432       TCGA-05-4433 
"LRRTM3 WILD-TYPE" "LRRTM3 WILD-TYPE" "LRRTM3 WILD-TYPE" "LRRTM3 WILD-TYPE" 
      TCGA-05-4434       TCGA-05-5420       TCGA-05-5423       TCGA-05-5425 
"LRRTM3 WILD-TYPE" "LRRTM3 WILD-TYPE" "LRRTM3 WILD-TYPE" "LRRTM3 WILD-TYPE" 
      TCGA-05-5429       TCGA-05-5715       TCGA-35-3615       TCGA-35-4122 
"LRRTM3 WILD-TYPE" "LRRTM3 WILD-TYPE" "LRRTM3 WILD-TYPE" "LRRTM3 WILD-TYPE" 
      TCGA-35-4123       TCGA-35-5375       TCGA-38-4625       TCGA-38-4626 
"LRRTM3 WILD-TYPE" "LRRTM3 WILD-TYPE" "LRRTM3 WILD-TYPE" "LRRTM3 WILD-TYPE" 
      TCGA-38-4627       TCGA-38-4628       TCGA-38-4629       TCGA-38-4630 
"LRRTM3 WILD-TYPE" "LRRTM3 WILD-TYPE" "LRRTM3 WILD-TYPE" "LRRTM3 WILD-TYPE" 
      TCGA-38-4631       TCGA-38-4632       TCGA-38-6178       TCGA-44-2655 
"LRRTM3 WILD-TYPE" "LRRTM3 WILD-TYPE" "LRRTM3 WILD-TYPE" "LRRTM3 WILD-TYPE" 
      TCGA-44-2656       TCGA-44-2657       TCGA-44-2659       TCGA-44-2661 
"LRRTM3 WILD-TYPE" "LRRTM3 WILD-TYPE" "LRRTM3 WILD-TYPE" "LRRTM3 WILD-TYPE" 
      TCGA-44-2662       TCGA-44-2665       TCGA-44-2666       TCGA-44-2668 
"LRRTM3 WILD-TYPE" "LRRTM3 WILD-TYPE" "LRRTM3 WILD-TYPE" "LRRTM3 WILD-TYPE" 
      TCGA-44-3396       TCGA-44-3398       TCGA-44-3918       TCGA-44-3919 
"LRRTM3 WILD-TYPE" "LRRTM3 WILD-TYPE" "LRRTM3 WILD-TYPE" "LRRTM3 WILD-TYPE" 
      TCGA-44-4112       TCGA-44-5643       TCGA-44-5645       TCGA-44-6144 
  "LRRTM3 MUTATED" "LRRTM3 WILD-TYPE" "LRRTM3 WILD-TYPE" "LRRTM3 WILD-TYPE" 
      TCGA-44-6145       TCGA-44-6146       TCGA-44-6147       TCGA-44-6148 
"LRRTM3 WILD-TYPE" "LRRTM3 WILD-TYPE" "LRRTM3 WILD-TYPE" "LRRTM3 WILD-TYPE" 
      TCGA-44-6774       TCGA-44-6775       TCGA-44-6776       TCGA-44-6777 
"LRRTM3 WILD-TYPE"   "LRRTM3 MUTATED" "LRRTM3 WILD-TYPE" "LRRTM3 WILD-TYPE" 
      TCGA-44-6778       TCGA-44-6779       TCGA-49-4486       TCGA-49-4487 
"LRRTM3 WILD-TYPE" "LRRTM3 WILD-TYPE" "LRRTM3 WILD-TYPE" "LRRTM3 WILD-TYPE" 
      TCGA-49-4488       TCGA-49-4490       TCGA-49-4494       TCGA-49-4501 
"LRRTM3 WILD-TYPE" "LRRTM3 WILD-TYPE" "LRRTM3 WILD-TYPE" "LRRTM3 WILD-TYPE" 
      TCGA-49-4505       TCGA-49-4506       TCGA-49-4507       TCGA-49-4510 
"LRRTM3 WILD-TYPE" "LRRTM3 WILD-TYPE" "LRRTM3 WILD-TYPE" "LRRTM3 WILD-TYPE" 
      TCGA-49-4512       TCGA-49-4514       TCGA-49-6742       TCGA-49-6743 
"LRRTM3 WILD-TYPE" "LRRTM3 WILD-TYPE" "LRRTM3 WILD-TYPE" "LRRTM3 WILD-TYPE" 
      TCGA-49-6744       TCGA-49-6745       TCGA-50-5044       TCGA-50-5045 
"LRRTM3 WILD-TYPE" "LRRTM3 WILD-TYPE" "LRRTM3 WILD-TYPE" "LRRTM3 WILD-TYPE" 
      TCGA-50-5049       TCGA-50-5051       TCGA-50-5055       TCGA-50-5066 
"LRRTM3 WILD-TYPE" "LRRTM3 WILD-TYPE" "LRRTM3 WILD-TYPE" "LRRTM3 WILD-TYPE" 
      TCGA-50-5068       TCGA-50-5072       TCGA-50-5930       TCGA-50-5931 
"LRRTM3 WILD-TYPE" "LRRTM3 WILD-TYPE" "LRRTM3 WILD-TYPE" "LRRTM3 WILD-TYPE" 
      TCGA-50-5932       TCGA-50-5933       TCGA-50-5935       TCGA-50-5936 
"LRRTM3 WILD-TYPE" "LRRTM3 WILD-TYPE" "LRRTM3 WILD-TYPE" "LRRTM3 WILD-TYPE" 
      TCGA-50-5939       TCGA-50-5941       TCGA-50-5942       TCGA-50-5944 
  "LRRTM3 MUTATED" "LRRTM3 WILD-TYPE" "LRRTM3 WILD-TYPE" "LRRTM3 WILD-TYPE" 
      TCGA-50-5946       TCGA-50-6590       TCGA-50-6591       TCGA-50-6592 
"LRRTM3 WILD-TYPE" "LRRTM3 WILD-TYPE" "LRRTM3 WILD-TYPE" "LRRTM3 WILD-TYPE" 
      TCGA-50-6593       TCGA-50-6594       TCGA-50-6595       TCGA-50-6597 
"LRRTM3 WILD-TYPE" "LRRTM3 WILD-TYPE" "LRRTM3 WILD-TYPE" "LRRTM3 WILD-TYPE" 
      TCGA-55-1592       TCGA-55-1594       TCGA-55-1595       TCGA-55-1596 
"LRRTM3 WILD-TYPE" "LRRTM3 WILD-TYPE" "LRRTM3 WILD-TYPE" "LRRTM3 WILD-TYPE" 
      TCGA-55-5899       TCGA-55-6543       TCGA-55-6642       TCGA-55-6712 
"LRRTM3 WILD-TYPE" "LRRTM3 WILD-TYPE" "LRRTM3 WILD-TYPE" "LRRTM3 WILD-TYPE" 
      TCGA-64-1676       TCGA-64-1677       TCGA-64-1678       TCGA-64-1680 
"LRRTM3 WILD-TYPE" "LRRTM3 WILD-TYPE"   "LRRTM3 MUTATED" "LRRTM3 WILD-TYPE" 
      TCGA-64-5774       TCGA-64-5775       TCGA-64-5778       TCGA-64-5779 
"LRRTM3 WILD-TYPE" "LRRTM3 WILD-TYPE" "LRRTM3 WILD-TYPE" "LRRTM3 WILD-TYPE" 
      TCGA-64-5781       TCGA-64-5815       TCGA-67-3770       TCGA-67-3771 
"LRRTM3 WILD-TYPE" "LRRTM3 WILD-TYPE" "LRRTM3 WILD-TYPE" "LRRTM3 WILD-TYPE" 
      TCGA-67-3772       TCGA-67-3773       TCGA-67-3774       TCGA-67-6215 
"LRRTM3 WILD-TYPE" "LRRTM3 WILD-TYPE" "LRRTM3 WILD-TYPE" "LRRTM3 WILD-TYPE" 
      TCGA-67-6216       TCGA-67-6217       TCGA-71-6725       TCGA-73-4658 
"LRRTM3 WILD-TYPE" "LRRTM3 WILD-TYPE" "LRRTM3 WILD-TYPE" "LRRTM3 WILD-TYPE" 
      TCGA-73-4659       TCGA-73-4662       TCGA-73-4666       TCGA-73-4668 
"LRRTM3 WILD-TYPE" "LRRTM3 WILD-TYPE" "LRRTM3 WILD-TYPE" "LRRTM3 WILD-TYPE" 
      TCGA-73-4670       TCGA-73-4675       TCGA-73-4676       TCGA-73-4677 
"LRRTM3 WILD-TYPE" "LRRTM3 WILD-TYPE" "LRRTM3 WILD-TYPE" "LRRTM3 WILD-TYPE" 
      TCGA-91-6828       TCGA-91-6829       TCGA-91-6831       TCGA-91-6835 
"LRRTM3 WILD-TYPE" "LRRTM3 WILD-TYPE"   "LRRTM3 MUTATED" "LRRTM3 WILD-TYPE" 
      TCGA-91-6836 
"LRRTM3 WILD-TYPE" 
[1] "hr=" "1.8"
D287V2, continuous
D287V3, binary
[1] "tbl2"
                  cls
clus               [,1] [,2]
  LRRTM3 MUTATED      3    4
  LRRTM3 WILD-TYPE   90   75
        clus
vv       LRRTM3 MUTATED LRRTM3 WILD-TYPE
  FEMALE              3               90
  MALE                4               75
D287V4, continuous
D287V5, multiclass
D287V6, multiclass
    clus
vv   LRRTM3 MUTATED LRRTM3 WILD-TYPE
  T1              1               40
  T2              5              103
  T3              0               14
  T4              1                7
D287V7, multiclass
       clus
vv      LRRTM3 MUTATED LRRTM3 WILD-TYPE
  N0                 6               89
  N1                 1               36
  N2+N3              0               35
D287V8, multiclass
    clus
vv   LRRTM3 MUTATED LRRTM3 WILD-TYPE
  M0              5              132
  M1              0                9
  MX              2               20
D287V9, multiclass
     clus
vv    LRRTM3 MUTATED LRRTM3 WILD-TYPE
  I                5               83
  II               1               32
  III              1               38
  IV               0                9
D287V10, binary
[1] "tbl2"
                  cls
clus               [,1] [,2]
  LRRTM3 MUTATED      0    7
  LRRTM3 WILD-TYPE   16  149
     clus
vv    LRRTM3 MUTATED LRRTM3 WILD-TYPE
  NO               0               16
  YES              7              149
D287V11, continuous
D287V12, continuous
D287V13, multiclass
                                             clus
vv                                            LRRTM3 MUTATED LRRTM3 WILD-TYPE
  CURRENT REFORMED SMOKER FOR < OR = 15 YEARS              1               61
  CURRENT REFORMED SMOKER FOR > 15 YEARS                   5               41
  CURRENT SMOKER                                           1               27
  LIFELONG NON-SMOKER                                      0               24
D287V14, continuous

Clustering(288) Variable = SMARCA4 MUTATION ANALYSIS
D288V1, survival
                   sevent
clus2                0  1
  SMARCA4 MUTATED    9  3
  SMARCA4 WILD-TYPE 90 47
  SMARCA4 MUTATED SMARCA4 WILD-TYPE 
               12               137 
  SMARCA4 MUTATED SMARCA4 WILD-TYPE 
                3                47 
$`SMARCA4 MUTATED`
TCGA-05-4432 TCGA-05-5420 TCGA-35-5375 TCGA-38-4631 TCGA-44-2656 TCGA-49-6742 
       25.02         1.02         8.68        11.64        19.10        15.02 
TCGA-50-5072 TCGA-50-5936 TCGA-50-6592 TCGA-55-1596 TCGA-55-6543 TCGA-67-3771 
        8.05         8.45        25.51        45.17         0.07         1.97 

$`SMARCA4 WILD-TYPE`
TCGA-05-4249 TCGA-05-4250 TCGA-05-4382 TCGA-05-4384 TCGA-05-4390 TCGA-05-4396 
       38.07         3.98        19.92        14.01        37.02         9.96 
TCGA-05-4397 TCGA-05-4398 TCGA-05-4402 TCGA-05-4405 TCGA-05-4415 TCGA-05-4417 
       24.03        47.05         8.02        20.05         2.96        14.93 
TCGA-05-4418 TCGA-05-4420 TCGA-05-4424 TCGA-05-4426 TCGA-05-4427 TCGA-05-4430 
        8.98        29.95        30.02        26.01        26.01        25.02 
TCGA-05-4433 TCGA-05-4434 TCGA-05-5423 TCGA-05-5425 TCGA-05-5429 TCGA-05-5715 
       24.00        15.02         4.96         2.96         0.99         2.04 
TCGA-35-3615 TCGA-35-4122 TCGA-35-4123 TCGA-38-4625 TCGA-38-4626 TCGA-38-4627 
        0.46         7.36         5.95        47.61        85.32        37.71 
TCGA-38-4628 TCGA-38-4629 TCGA-38-4630 TCGA-38-4632 TCGA-38-6178 TCGA-44-2655 
       49.02        28.37        35.28        44.61         5.19        18.87 
TCGA-44-2657 TCGA-44-2659 TCGA-44-2661 TCGA-44-2662 TCGA-44-2665 TCGA-44-2666 
       13.15        17.39         3.39        15.78        13.15         3.19 
TCGA-44-2668 TCGA-44-3396 TCGA-44-3398 TCGA-44-3918 TCGA-44-3919 TCGA-44-4112 
        8.09        10.22         8.32         6.44         6.21         4.60 
TCGA-44-5643 TCGA-44-5645 TCGA-44-6144 TCGA-44-6145 TCGA-44-6146 TCGA-44-6147 
        3.48         6.84         0.30         3.35         9.93         7.76 
TCGA-44-6148 TCGA-44-6774 TCGA-44-6775 TCGA-44-6776 TCGA-44-6777 TCGA-44-6778 
        3.12         5.42         2.70        63.72        32.45        36.49 
TCGA-44-6779 TCGA-49-4486 TCGA-49-4487 TCGA-49-4488 TCGA-49-4490 TCGA-49-4494 
       16.41        76.21        28.11        28.57        12.66        35.54 
TCGA-49-4501 TCGA-49-4505 TCGA-49-4506 TCGA-49-4507 TCGA-49-4510 TCGA-49-4512 
       46.72        14.07        32.84         8.81        29.46        29.75 
TCGA-49-4514 TCGA-49-6743 TCGA-49-6744 TCGA-49-6745 TCGA-50-5044 TCGA-50-5045 
       43.20        12.13        12.99         4.93        20.48        71.47 
TCGA-50-5049 TCGA-50-5051 TCGA-50-5055 TCGA-50-5066 TCGA-50-5068 TCGA-50-5930 
       48.82        14.96        25.81         9.76        49.28         9.27 
TCGA-50-5931 TCGA-50-5932 TCGA-50-5933 TCGA-50-5935 TCGA-50-5939 TCGA-50-5941 
        8.78        35.87        77.88        21.47        15.12         9.37 
TCGA-50-5942 TCGA-50-5944 TCGA-50-5946 TCGA-50-6590 TCGA-50-6591 TCGA-50-6593 
        4.44        12.26        11.47        42.31         3.88        11.05 
TCGA-50-6594 TCGA-50-6595 TCGA-50-6597 TCGA-55-1592 TCGA-55-1594 TCGA-55-1595 
       12.16         6.21        33.37        23.05        38.73        48.62 
TCGA-55-5899 TCGA-55-6642 TCGA-55-6712 TCGA-64-1676 TCGA-64-1677 TCGA-64-1678 
        2.86        32.61         0.79        56.81        20.65        39.09 
TCGA-64-1680 TCGA-64-5774 TCGA-64-5775 TCGA-64-5778 TCGA-64-5779 TCGA-64-5781 
       37.02        83.84         0.10        30.44        16.67        39.52 
TCGA-64-5815 TCGA-67-3770 TCGA-67-3772 TCGA-67-3773 TCGA-67-3774 TCGA-67-6215 
        7.33         0.99         0.59         2.04         0.59         0.89 
TCGA-67-6216 TCGA-67-6217 TCGA-71-6725 TCGA-73-4658 TCGA-73-4659 TCGA-73-4662 
        0.69        13.87         2.01        52.57        23.38        29.95 
TCGA-73-4666 TCGA-73-4668 TCGA-73-4670 TCGA-73-4675 TCGA-73-4676 TCGA-73-4677 
       20.28        15.35         0.46         1.32         4.01         1.25 
TCGA-91-6828 TCGA-91-6829 TCGA-91-6831 TCGA-91-6835 TCGA-91-6836 
        1.22        41.33         1.28         1.15         0.36 

  SMARCA4 MUTATED SMARCA4 WILD-TYPE 
             0.07              0.10 
  SMARCA4 MUTATED SMARCA4 WILD-TYPE 
            45.17             85.32 
  SMARCA4 MUTATED SMARCA4 WILD-TYPE 
            10.16             14.01 
[1] "0.1 - 45.2 (10.2)" "0.1 - 85.3 (14.0)"
       TCGA-05-4249        TCGA-05-4250        TCGA-05-4382        TCGA-05-4384 
"SMARCA4 WILD-TYPE" "SMARCA4 WILD-TYPE" "SMARCA4 WILD-TYPE" "SMARCA4 WILD-TYPE" 
       TCGA-05-4390        TCGA-05-4396        TCGA-05-4397        TCGA-05-4398 
"SMARCA4 WILD-TYPE" "SMARCA4 WILD-TYPE" "SMARCA4 WILD-TYPE" "SMARCA4 WILD-TYPE" 
       TCGA-05-4402        TCGA-05-4405        TCGA-05-4415        TCGA-05-4417 
"SMARCA4 WILD-TYPE" "SMARCA4 WILD-TYPE" "SMARCA4 WILD-TYPE" "SMARCA4 WILD-TYPE" 
       TCGA-05-4418        TCGA-05-4420        TCGA-05-4424        TCGA-05-4426 
"SMARCA4 WILD-TYPE" "SMARCA4 WILD-TYPE" "SMARCA4 WILD-TYPE" "SMARCA4 WILD-TYPE" 
       TCGA-05-4427        TCGA-05-4430        TCGA-05-4432        TCGA-05-4433 
"SMARCA4 WILD-TYPE" "SMARCA4 WILD-TYPE"   "SMARCA4 MUTATED" "SMARCA4 WILD-TYPE" 
       TCGA-05-4434        TCGA-05-5420        TCGA-05-5423        TCGA-05-5425 
"SMARCA4 WILD-TYPE"   "SMARCA4 MUTATED" "SMARCA4 WILD-TYPE" "SMARCA4 WILD-TYPE" 
       TCGA-05-5429        TCGA-05-5715        TCGA-35-3615        TCGA-35-4122 
"SMARCA4 WILD-TYPE" "SMARCA4 WILD-TYPE" "SMARCA4 WILD-TYPE" "SMARCA4 WILD-TYPE" 
       TCGA-35-4123        TCGA-35-5375        TCGA-38-4625        TCGA-38-4626 
"SMARCA4 WILD-TYPE"   "SMARCA4 MUTATED" "SMARCA4 WILD-TYPE" "SMARCA4 WILD-TYPE" 
       TCGA-38-4627        TCGA-38-4628        TCGA-38-4629        TCGA-38-4630 
"SMARCA4 WILD-TYPE" "SMARCA4 WILD-TYPE" "SMARCA4 WILD-TYPE" "SMARCA4 WILD-TYPE" 
       TCGA-38-4631        TCGA-38-4632        TCGA-38-6178        TCGA-44-2655 
  "SMARCA4 MUTATED" "SMARCA4 WILD-TYPE" "SMARCA4 WILD-TYPE" "SMARCA4 WILD-TYPE" 
       TCGA-44-2656        TCGA-44-2657        TCGA-44-2659        TCGA-44-2661 
  "SMARCA4 MUTATED" "SMARCA4 WILD-TYPE" "SMARCA4 WILD-TYPE" "SMARCA4 WILD-TYPE" 
       TCGA-44-2662        TCGA-44-2665        TCGA-44-2666        TCGA-44-2668 
"SMARCA4 WILD-TYPE" "SMARCA4 WILD-TYPE" "SMARCA4 WILD-TYPE" "SMARCA4 WILD-TYPE" 
       TCGA-44-3396        TCGA-44-3398        TCGA-44-3918        TCGA-44-3919 
"SMARCA4 WILD-TYPE" "SMARCA4 WILD-TYPE" "SMARCA4 WILD-TYPE" "SMARCA4 WILD-TYPE" 
       TCGA-44-4112        TCGA-44-5643        TCGA-44-5645        TCGA-44-6144 
"SMARCA4 WILD-TYPE" "SMARCA4 WILD-TYPE" "SMARCA4 WILD-TYPE" "SMARCA4 WILD-TYPE" 
       TCGA-44-6145        TCGA-44-6146        TCGA-44-6147        TCGA-44-6148 
"SMARCA4 WILD-TYPE" "SMARCA4 WILD-TYPE" "SMARCA4 WILD-TYPE" "SMARCA4 WILD-TYPE" 
       TCGA-44-6774        TCGA-44-6775        TCGA-44-6776        TCGA-44-6777 
"SMARCA4 WILD-TYPE" "SMARCA4 WILD-TYPE" "SMARCA4 WILD-TYPE" "SMARCA4 WILD-TYPE" 
       TCGA-44-6778        TCGA-44-6779        TCGA-49-4486        TCGA-49-4487 
"SMARCA4 WILD-TYPE" "SMARCA4 WILD-TYPE" "SMARCA4 WILD-TYPE" "SMARCA4 WILD-TYPE" 
       TCGA-49-4488        TCGA-49-4490        TCGA-49-4494        TCGA-49-4501 
"SMARCA4 WILD-TYPE" "SMARCA4 WILD-TYPE" "SMARCA4 WILD-TYPE" "SMARCA4 WILD-TYPE" 
       TCGA-49-4505        TCGA-49-4506        TCGA-49-4507        TCGA-49-4510 
"SMARCA4 WILD-TYPE" "SMARCA4 WILD-TYPE" "SMARCA4 WILD-TYPE" "SMARCA4 WILD-TYPE" 
       TCGA-49-4512        TCGA-49-4514        TCGA-49-6742        TCGA-49-6743 
"SMARCA4 WILD-TYPE" "SMARCA4 WILD-TYPE"   "SMARCA4 MUTATED" "SMARCA4 WILD-TYPE" 
       TCGA-49-6744        TCGA-49-6745        TCGA-50-5044        TCGA-50-5045 
"SMARCA4 WILD-TYPE" "SMARCA4 WILD-TYPE" "SMARCA4 WILD-TYPE" "SMARCA4 WILD-TYPE" 
       TCGA-50-5049        TCGA-50-5051        TCGA-50-5055        TCGA-50-5066 
"SMARCA4 WILD-TYPE" "SMARCA4 WILD-TYPE" "SMARCA4 WILD-TYPE" "SMARCA4 WILD-TYPE" 
       TCGA-50-5068        TCGA-50-5072        TCGA-50-5930        TCGA-50-5931 
"SMARCA4 WILD-TYPE"   "SMARCA4 MUTATED" "SMARCA4 WILD-TYPE" "SMARCA4 WILD-TYPE" 
       TCGA-50-5932        TCGA-50-5933        TCGA-50-5935        TCGA-50-5936 
"SMARCA4 WILD-TYPE" "SMARCA4 WILD-TYPE" "SMARCA4 WILD-TYPE"   "SMARCA4 MUTATED" 
       TCGA-50-5939        TCGA-50-5941        TCGA-50-5942        TCGA-50-5944 
"SMARCA4 WILD-TYPE" "SMARCA4 WILD-TYPE" "SMARCA4 WILD-TYPE" "SMARCA4 WILD-TYPE" 
       TCGA-50-5946        TCGA-50-6590        TCGA-50-6591        TCGA-50-6592 
"SMARCA4 WILD-TYPE" "SMARCA4 WILD-TYPE" "SMARCA4 WILD-TYPE"   "SMARCA4 MUTATED" 
       TCGA-50-6593        TCGA-50-6594        TCGA-50-6595        TCGA-50-6597 
"SMARCA4 WILD-TYPE" "SMARCA4 WILD-TYPE" "SMARCA4 WILD-TYPE" "SMARCA4 WILD-TYPE" 
       TCGA-55-1592        TCGA-55-1594        TCGA-55-1595        TCGA-55-1596 
"SMARCA4 WILD-TYPE" "SMARCA4 WILD-TYPE" "SMARCA4 WILD-TYPE"   "SMARCA4 MUTATED" 
       TCGA-55-5899        TCGA-55-6543        TCGA-55-6642        TCGA-55-6712 
"SMARCA4 WILD-TYPE"   "SMARCA4 MUTATED" "SMARCA4 WILD-TYPE" "SMARCA4 WILD-TYPE" 
       TCGA-64-1676        TCGA-64-1677        TCGA-64-1678        TCGA-64-1680 
"SMARCA4 WILD-TYPE" "SMARCA4 WILD-TYPE" "SMARCA4 WILD-TYPE" "SMARCA4 WILD-TYPE" 
       TCGA-64-5774        TCGA-64-5775        TCGA-64-5778        TCGA-64-5779 
"SMARCA4 WILD-TYPE" "SMARCA4 WILD-TYPE" "SMARCA4 WILD-TYPE" "SMARCA4 WILD-TYPE" 
       TCGA-64-5781        TCGA-64-5815        TCGA-67-3770        TCGA-67-3771 
"SMARCA4 WILD-TYPE" "SMARCA4 WILD-TYPE" "SMARCA4 WILD-TYPE"   "SMARCA4 MUTATED" 
       TCGA-67-3772        TCGA-67-3773        TCGA-67-3774        TCGA-67-6215 
"SMARCA4 WILD-TYPE" "SMARCA4 WILD-TYPE" "SMARCA4 WILD-TYPE" "SMARCA4 WILD-TYPE" 
       TCGA-67-6216        TCGA-67-6217        TCGA-71-6725        TCGA-73-4658 
"SMARCA4 WILD-TYPE" "SMARCA4 WILD-TYPE" "SMARCA4 WILD-TYPE" "SMARCA4 WILD-TYPE" 
       TCGA-73-4659        TCGA-73-4662        TCGA-73-4666        TCGA-73-4668 
"SMARCA4 WILD-TYPE" "SMARCA4 WILD-TYPE" "SMARCA4 WILD-TYPE" "SMARCA4 WILD-TYPE" 
       TCGA-73-4670        TCGA-73-4675        TCGA-73-4676        TCGA-73-4677 
"SMARCA4 WILD-TYPE" "SMARCA4 WILD-TYPE" "SMARCA4 WILD-TYPE" "SMARCA4 WILD-TYPE" 
       TCGA-91-6828        TCGA-91-6829        TCGA-91-6831        TCGA-91-6835 
"SMARCA4 WILD-TYPE" "SMARCA4 WILD-TYPE" "SMARCA4 WILD-TYPE" "SMARCA4 WILD-TYPE" 
       TCGA-91-6836 
"SMARCA4 WILD-TYPE" 
       TCGA-05-4249        TCGA-05-4250        TCGA-05-4382        TCGA-05-4384 
"SMARCA4 WILD-TYPE" "SMARCA4 WILD-TYPE" "SMARCA4 WILD-TYPE" "SMARCA4 WILD-TYPE" 
       TCGA-05-4390        TCGA-05-4396        TCGA-05-4397        TCGA-05-4398 
"SMARCA4 WILD-TYPE" "SMARCA4 WILD-TYPE" "SMARCA4 WILD-TYPE" "SMARCA4 WILD-TYPE" 
       TCGA-05-4402        TCGA-05-4405        TCGA-05-4415        TCGA-05-4417 
"SMARCA4 WILD-TYPE" "SMARCA4 WILD-TYPE" "SMARCA4 WILD-TYPE" "SMARCA4 WILD-TYPE" 
       TCGA-05-4418        TCGA-05-4420        TCGA-05-4424        TCGA-05-4426 
"SMARCA4 WILD-TYPE" "SMARCA4 WILD-TYPE" "SMARCA4 WILD-TYPE" "SMARCA4 WILD-TYPE" 
       TCGA-05-4427        TCGA-05-4430        TCGA-05-4432        TCGA-05-4433 
"SMARCA4 WILD-TYPE" "SMARCA4 WILD-TYPE"   "SMARCA4 MUTATED" "SMARCA4 WILD-TYPE" 
       TCGA-05-4434        TCGA-05-5420        TCGA-05-5423        TCGA-05-5425 
"SMARCA4 WILD-TYPE"   "SMARCA4 MUTATED" "SMARCA4 WILD-TYPE" "SMARCA4 WILD-TYPE" 
       TCGA-05-5429        TCGA-05-5715        TCGA-35-3615        TCGA-35-4122 
"SMARCA4 WILD-TYPE" "SMARCA4 WILD-TYPE" "SMARCA4 WILD-TYPE" "SMARCA4 WILD-TYPE" 
       TCGA-35-4123        TCGA-35-5375        TCGA-38-4625        TCGA-38-4626 
"SMARCA4 WILD-TYPE"   "SMARCA4 MUTATED" "SMARCA4 WILD-TYPE" "SMARCA4 WILD-TYPE" 
       TCGA-38-4627        TCGA-38-4628        TCGA-38-4629        TCGA-38-4630 
"SMARCA4 WILD-TYPE" "SMARCA4 WILD-TYPE" "SMARCA4 WILD-TYPE" "SMARCA4 WILD-TYPE" 
       TCGA-38-4631        TCGA-38-4632        TCGA-38-6178        TCGA-44-2655 
  "SMARCA4 MUTATED" "SMARCA4 WILD-TYPE" "SMARCA4 WILD-TYPE" "SMARCA4 WILD-TYPE" 
       TCGA-44-2656        TCGA-44-2657        TCGA-44-2659        TCGA-44-2661 
  "SMARCA4 MUTATED" "SMARCA4 WILD-TYPE" "SMARCA4 WILD-TYPE" "SMARCA4 WILD-TYPE" 
       TCGA-44-2662        TCGA-44-2665        TCGA-44-2666        TCGA-44-2668 
"SMARCA4 WILD-TYPE" "SMARCA4 WILD-TYPE" "SMARCA4 WILD-TYPE" "SMARCA4 WILD-TYPE" 
       TCGA-44-3396        TCGA-44-3398        TCGA-44-3918        TCGA-44-3919 
"SMARCA4 WILD-TYPE" "SMARCA4 WILD-TYPE" "SMARCA4 WILD-TYPE" "SMARCA4 WILD-TYPE" 
       TCGA-44-4112        TCGA-44-5643        TCGA-44-5645        TCGA-44-6144 
"SMARCA4 WILD-TYPE" "SMARCA4 WILD-TYPE" "SMARCA4 WILD-TYPE" "SMARCA4 WILD-TYPE" 
       TCGA-44-6145        TCGA-44-6146        TCGA-44-6147        TCGA-44-6148 
"SMARCA4 WILD-TYPE" "SMARCA4 WILD-TYPE" "SMARCA4 WILD-TYPE" "SMARCA4 WILD-TYPE" 
       TCGA-44-6774        TCGA-44-6775        TCGA-44-6776        TCGA-44-6777 
"SMARCA4 WILD-TYPE" "SMARCA4 WILD-TYPE" "SMARCA4 WILD-TYPE" "SMARCA4 WILD-TYPE" 
       TCGA-44-6778        TCGA-44-6779        TCGA-49-4486        TCGA-49-4487 
"SMARCA4 WILD-TYPE" "SMARCA4 WILD-TYPE" "SMARCA4 WILD-TYPE" "SMARCA4 WILD-TYPE" 
       TCGA-49-4488        TCGA-49-4490        TCGA-49-4494        TCGA-49-4501 
"SMARCA4 WILD-TYPE" "SMARCA4 WILD-TYPE" "SMARCA4 WILD-TYPE" "SMARCA4 WILD-TYPE" 
       TCGA-49-4505        TCGA-49-4506        TCGA-49-4507        TCGA-49-4510 
"SMARCA4 WILD-TYPE" "SMARCA4 WILD-TYPE" "SMARCA4 WILD-TYPE" "SMARCA4 WILD-TYPE" 
       TCGA-49-4512        TCGA-49-4514        TCGA-49-6742        TCGA-49-6743 
"SMARCA4 WILD-TYPE" "SMARCA4 WILD-TYPE"   "SMARCA4 MUTATED" "SMARCA4 WILD-TYPE" 
       TCGA-49-6744        TCGA-49-6745        TCGA-50-5044        TCGA-50-5045 
"SMARCA4 WILD-TYPE" "SMARCA4 WILD-TYPE" "SMARCA4 WILD-TYPE" "SMARCA4 WILD-TYPE" 
       TCGA-50-5049        TCGA-50-5051        TCGA-50-5055        TCGA-50-5066 
"SMARCA4 WILD-TYPE" "SMARCA4 WILD-TYPE" "SMARCA4 WILD-TYPE" "SMARCA4 WILD-TYPE" 
       TCGA-50-5068        TCGA-50-5072        TCGA-50-5930        TCGA-50-5931 
"SMARCA4 WILD-TYPE"   "SMARCA4 MUTATED" "SMARCA4 WILD-TYPE" "SMARCA4 WILD-TYPE" 
       TCGA-50-5932        TCGA-50-5933        TCGA-50-5935        TCGA-50-5936 
"SMARCA4 WILD-TYPE" "SMARCA4 WILD-TYPE" "SMARCA4 WILD-TYPE"   "SMARCA4 MUTATED" 
       TCGA-50-5939        TCGA-50-5941        TCGA-50-5942        TCGA-50-5944 
"SMARCA4 WILD-TYPE" "SMARCA4 WILD-TYPE" "SMARCA4 WILD-TYPE" "SMARCA4 WILD-TYPE" 
       TCGA-50-5946        TCGA-50-6590        TCGA-50-6591        TCGA-50-6592 
"SMARCA4 WILD-TYPE" "SMARCA4 WILD-TYPE" "SMARCA4 WILD-TYPE"   "SMARCA4 MUTATED" 
       TCGA-50-6593        TCGA-50-6594        TCGA-50-6595        TCGA-50-6597 
"SMARCA4 WILD-TYPE" "SMARCA4 WILD-TYPE" "SMARCA4 WILD-TYPE" "SMARCA4 WILD-TYPE" 
       TCGA-55-1592        TCGA-55-1594        TCGA-55-1595        TCGA-55-1596 
"SMARCA4 WILD-TYPE" "SMARCA4 WILD-TYPE" "SMARCA4 WILD-TYPE"   "SMARCA4 MUTATED" 
       TCGA-55-5899        TCGA-55-6543        TCGA-55-6642        TCGA-55-6712 
"SMARCA4 WILD-TYPE"   "SMARCA4 MUTATED" "SMARCA4 WILD-TYPE" "SMARCA4 WILD-TYPE" 
       TCGA-64-1676        TCGA-64-1677        TCGA-64-1678        TCGA-64-1680 
"SMARCA4 WILD-TYPE" "SMARCA4 WILD-TYPE" "SMARCA4 WILD-TYPE" "SMARCA4 WILD-TYPE" 
       TCGA-64-5774        TCGA-64-5775        TCGA-64-5778        TCGA-64-5779 
"SMARCA4 WILD-TYPE" "SMARCA4 WILD-TYPE" "SMARCA4 WILD-TYPE" "SMARCA4 WILD-TYPE" 
       TCGA-64-5781        TCGA-64-5815        TCGA-67-3770        TCGA-67-3771 
"SMARCA4 WILD-TYPE" "SMARCA4 WILD-TYPE" "SMARCA4 WILD-TYPE"   "SMARCA4 MUTATED" 
       TCGA-67-3772        TCGA-67-3773        TCGA-67-3774        TCGA-67-6215 
"SMARCA4 WILD-TYPE" "SMARCA4 WILD-TYPE" "SMARCA4 WILD-TYPE" "SMARCA4 WILD-TYPE" 
       TCGA-67-6216        TCGA-67-6217        TCGA-71-6725        TCGA-73-4658 
"SMARCA4 WILD-TYPE" "SMARCA4 WILD-TYPE" "SMARCA4 WILD-TYPE" "SMARCA4 WILD-TYPE" 
       TCGA-73-4659        TCGA-73-4662        TCGA-73-4666        TCGA-73-4668 
"SMARCA4 WILD-TYPE" "SMARCA4 WILD-TYPE" "SMARCA4 WILD-TYPE" "SMARCA4 WILD-TYPE" 
       TCGA-73-4670        TCGA-73-4675        TCGA-73-4676        TCGA-73-4677 
"SMARCA4 WILD-TYPE" "SMARCA4 WILD-TYPE" "SMARCA4 WILD-TYPE" "SMARCA4 WILD-TYPE" 
       TCGA-91-6828        TCGA-91-6829        TCGA-91-6831        TCGA-91-6835 
"SMARCA4 WILD-TYPE" "SMARCA4 WILD-TYPE" "SMARCA4 WILD-TYPE" "SMARCA4 WILD-TYPE" 
       TCGA-91-6836 
"SMARCA4 WILD-TYPE" 
       TCGA-05-4249        TCGA-05-4250        TCGA-05-4382        TCGA-05-4384 
"SMARCA4 WILD-TYPE" "SMARCA4 WILD-TYPE" "SMARCA4 WILD-TYPE" "SMARCA4 WILD-TYPE" 
       TCGA-05-4390        TCGA-05-4396        TCGA-05-4397        TCGA-05-4398 
"SMARCA4 WILD-TYPE" "SMARCA4 WILD-TYPE" "SMARCA4 WILD-TYPE" "SMARCA4 WILD-TYPE" 
       TCGA-05-4402        TCGA-05-4405        TCGA-05-4415        TCGA-05-4417 
"SMARCA4 WILD-TYPE" "SMARCA4 WILD-TYPE" "SMARCA4 WILD-TYPE" "SMARCA4 WILD-TYPE" 
       TCGA-05-4418        TCGA-05-4420        TCGA-05-4424        TCGA-05-4426 
"SMARCA4 WILD-TYPE" "SMARCA4 WILD-TYPE" "SMARCA4 WILD-TYPE" "SMARCA4 WILD-TYPE" 
       TCGA-05-4427        TCGA-05-4430        TCGA-05-4432        TCGA-05-4433 
"SMARCA4 WILD-TYPE" "SMARCA4 WILD-TYPE"   "SMARCA4 MUTATED" "SMARCA4 WILD-TYPE" 
       TCGA-05-4434        TCGA-05-5420        TCGA-05-5423        TCGA-05-5425 
"SMARCA4 WILD-TYPE"   "SMARCA4 MUTATED" "SMARCA4 WILD-TYPE" "SMARCA4 WILD-TYPE" 
       TCGA-05-5429        TCGA-05-5715        TCGA-35-3615        TCGA-35-4122 
"SMARCA4 WILD-TYPE" "SMARCA4 WILD-TYPE" "SMARCA4 WILD-TYPE" "SMARCA4 WILD-TYPE" 
       TCGA-35-4123        TCGA-35-5375        TCGA-38-4625        TCGA-38-4626 
"SMARCA4 WILD-TYPE"   "SMARCA4 MUTATED" "SMARCA4 WILD-TYPE" "SMARCA4 WILD-TYPE" 
       TCGA-38-4627        TCGA-38-4628        TCGA-38-4629        TCGA-38-4630 
"SMARCA4 WILD-TYPE" "SMARCA4 WILD-TYPE" "SMARCA4 WILD-TYPE" "SMARCA4 WILD-TYPE" 
       TCGA-38-4631        TCGA-38-4632        TCGA-38-6178        TCGA-44-2655 
  "SMARCA4 MUTATED" "SMARCA4 WILD-TYPE" "SMARCA4 WILD-TYPE" "SMARCA4 WILD-TYPE" 
       TCGA-44-2656        TCGA-44-2657        TCGA-44-2659        TCGA-44-2661 
  "SMARCA4 MUTATED" "SMARCA4 WILD-TYPE" "SMARCA4 WILD-TYPE" "SMARCA4 WILD-TYPE" 
       TCGA-44-2662        TCGA-44-2665        TCGA-44-2666        TCGA-44-2668 
"SMARCA4 WILD-TYPE" "SMARCA4 WILD-TYPE" "SMARCA4 WILD-TYPE" "SMARCA4 WILD-TYPE" 
       TCGA-44-3396        TCGA-44-3398        TCGA-44-3918        TCGA-44-3919 
"SMARCA4 WILD-TYPE" "SMARCA4 WILD-TYPE" "SMARCA4 WILD-TYPE" "SMARCA4 WILD-TYPE" 
       TCGA-44-4112        TCGA-44-5643        TCGA-44-5645        TCGA-44-6144 
"SMARCA4 WILD-TYPE" "SMARCA4 WILD-TYPE" "SMARCA4 WILD-TYPE" "SMARCA4 WILD-TYPE" 
       TCGA-44-6145        TCGA-44-6146        TCGA-44-6147        TCGA-44-6148 
"SMARCA4 WILD-TYPE" "SMARCA4 WILD-TYPE" "SMARCA4 WILD-TYPE" "SMARCA4 WILD-TYPE" 
       TCGA-44-6774        TCGA-44-6775        TCGA-44-6776        TCGA-44-6777 
"SMARCA4 WILD-TYPE" "SMARCA4 WILD-TYPE" "SMARCA4 WILD-TYPE" "SMARCA4 WILD-TYPE" 
       TCGA-44-6778        TCGA-44-6779        TCGA-49-4486        TCGA-49-4487 
"SMARCA4 WILD-TYPE" "SMARCA4 WILD-TYPE" "SMARCA4 WILD-TYPE" "SMARCA4 WILD-TYPE" 
       TCGA-49-4488        TCGA-49-4490        TCGA-49-4494        TCGA-49-4501 
"SMARCA4 WILD-TYPE" "SMARCA4 WILD-TYPE" "SMARCA4 WILD-TYPE" "SMARCA4 WILD-TYPE" 
       TCGA-49-4505        TCGA-49-4506        TCGA-49-4507        TCGA-49-4510 
"SMARCA4 WILD-TYPE" "SMARCA4 WILD-TYPE" "SMARCA4 WILD-TYPE" "SMARCA4 WILD-TYPE" 
       TCGA-49-4512        TCGA-49-4514        TCGA-49-6742        TCGA-49-6743 
"SMARCA4 WILD-TYPE" "SMARCA4 WILD-TYPE"   "SMARCA4 MUTATED" "SMARCA4 WILD-TYPE" 
       TCGA-49-6744        TCGA-49-6745        TCGA-50-5044        TCGA-50-5045 
"SMARCA4 WILD-TYPE" "SMARCA4 WILD-TYPE" "SMARCA4 WILD-TYPE" "SMARCA4 WILD-TYPE" 
       TCGA-50-5049        TCGA-50-5051        TCGA-50-5055        TCGA-50-5066 
"SMARCA4 WILD-TYPE" "SMARCA4 WILD-TYPE" "SMARCA4 WILD-TYPE" "SMARCA4 WILD-TYPE" 
       TCGA-50-5068        TCGA-50-5072        TCGA-50-5930        TCGA-50-5931 
"SMARCA4 WILD-TYPE"   "SMARCA4 MUTATED" "SMARCA4 WILD-TYPE" "SMARCA4 WILD-TYPE" 
       TCGA-50-5932        TCGA-50-5933        TCGA-50-5935        TCGA-50-5936 
"SMARCA4 WILD-TYPE" "SMARCA4 WILD-TYPE" "SMARCA4 WILD-TYPE"   "SMARCA4 MUTATED" 
       TCGA-50-5939        TCGA-50-5941        TCGA-50-5942        TCGA-50-5944 
"SMARCA4 WILD-TYPE" "SMARCA4 WILD-TYPE" "SMARCA4 WILD-TYPE" "SMARCA4 WILD-TYPE" 
       TCGA-50-5946        TCGA-50-6590        TCGA-50-6591        TCGA-50-6592 
"SMARCA4 WILD-TYPE" "SMARCA4 WILD-TYPE" "SMARCA4 WILD-TYPE"   "SMARCA4 MUTATED" 
       TCGA-50-6593        TCGA-50-6594        TCGA-50-6595        TCGA-50-6597 
"SMARCA4 WILD-TYPE" "SMARCA4 WILD-TYPE" "SMARCA4 WILD-TYPE" "SMARCA4 WILD-TYPE" 
       TCGA-55-1592        TCGA-55-1594        TCGA-55-1595        TCGA-55-1596 
"SMARCA4 WILD-TYPE" "SMARCA4 WILD-TYPE" "SMARCA4 WILD-TYPE"   "SMARCA4 MUTATED" 
       TCGA-55-5899        TCGA-55-6543        TCGA-55-6642        TCGA-55-6712 
"SMARCA4 WILD-TYPE"   "SMARCA4 MUTATED" "SMARCA4 WILD-TYPE" "SMARCA4 WILD-TYPE" 
       TCGA-64-1676        TCGA-64-1677        TCGA-64-1678        TCGA-64-1680 
"SMARCA4 WILD-TYPE" "SMARCA4 WILD-TYPE" "SMARCA4 WILD-TYPE" "SMARCA4 WILD-TYPE" 
       TCGA-64-5774        TCGA-64-5775        TCGA-64-5778        TCGA-64-5779 
"SMARCA4 WILD-TYPE" "SMARCA4 WILD-TYPE" "SMARCA4 WILD-TYPE" "SMARCA4 WILD-TYPE" 
       TCGA-64-5781        TCGA-64-5815        TCGA-67-3770        TCGA-67-3771 
"SMARCA4 WILD-TYPE" "SMARCA4 WILD-TYPE" "SMARCA4 WILD-TYPE"   "SMARCA4 MUTATED" 
       TCGA-67-3772        TCGA-67-3773        TCGA-67-3774        TCGA-67-6215 
"SMARCA4 WILD-TYPE" "SMARCA4 WILD-TYPE" "SMARCA4 WILD-TYPE" "SMARCA4 WILD-TYPE" 
       TCGA-67-6216        TCGA-67-6217        TCGA-71-6725        TCGA-73-4658 
"SMARCA4 WILD-TYPE" "SMARCA4 WILD-TYPE" "SMARCA4 WILD-TYPE" "SMARCA4 WILD-TYPE" 
       TCGA-73-4659        TCGA-73-4662        TCGA-73-4666        TCGA-73-4668 
"SMARCA4 WILD-TYPE" "SMARCA4 WILD-TYPE" "SMARCA4 WILD-TYPE" "SMARCA4 WILD-TYPE" 
       TCGA-73-4670        TCGA-73-4675        TCGA-73-4676        TCGA-73-4677 
"SMARCA4 WILD-TYPE" "SMARCA4 WILD-TYPE" "SMARCA4 WILD-TYPE" "SMARCA4 WILD-TYPE" 
       TCGA-91-6828        TCGA-91-6829        TCGA-91-6831        TCGA-91-6835 
"SMARCA4 WILD-TYPE" "SMARCA4 WILD-TYPE" "SMARCA4 WILD-TYPE" "SMARCA4 WILD-TYPE" 
       TCGA-91-6836 
"SMARCA4 WILD-TYPE" 
[1] "hr=" "1.3"
D288V2, continuous
D288V3, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  SMARCA4 MUTATED      5    9
  SMARCA4 WILD-TYPE   88   70
        clus
vv       SMARCA4 MUTATED SMARCA4 WILD-TYPE
  FEMALE               5                88
  MALE                 9                70
D288V4, continuous
[1] "Remove cluster labels:" "SMARCA4 MUTATED"       
clus
  SMARCA4 MUTATED SMARCA4 WILD-TYPE 
                1                11 
       TCGA-35-4122        TCGA-35-4123        TCGA-64-1677        TCGA-64-5778 
"SMARCA4 WILD-TYPE" "SMARCA4 WILD-TYPE" "SMARCA4 WILD-TYPE" "SMARCA4 WILD-TYPE" 
       TCGA-71-6725        TCGA-73-4659        TCGA-73-4662        TCGA-73-4666 
"SMARCA4 WILD-TYPE" "SMARCA4 WILD-TYPE" "SMARCA4 WILD-TYPE" "SMARCA4 WILD-TYPE" 
       TCGA-73-4668        TCGA-73-4676        TCGA-75-5122 
"SMARCA4 WILD-TYPE" "SMARCA4 WILD-TYPE" "SMARCA4 WILD-TYPE" 
D288V5, multiclass
D288V6, multiclass
    clus
vv   SMARCA4 MUTATED SMARCA4 WILD-TYPE
  T1               2                39
  T2              11                97
  T3               1                13
  T4               0                 8
D288V7, multiclass
       clus
vv      SMARCA4 MUTATED SMARCA4 WILD-TYPE
  N0                  7                88
  N1                  3                34
  N2+N3               4                31
D288V8, multiclass
    clus
vv   SMARCA4 MUTATED SMARCA4 WILD-TYPE
  M0              11               126
  M1               0                 9
  MX               2                20
D288V9, multiclass
     clus
vv    SMARCA4 MUTATED SMARCA4 WILD-TYPE
  I                 5                83
  II                4                29
  III               4                35
  IV                0                 9
D288V10, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  SMARCA4 MUTATED      1   13
  SMARCA4 WILD-TYPE   15  143
     clus
vv    SMARCA4 MUTATED SMARCA4 WILD-TYPE
  NO                1                15
  YES              13               143
D288V11, continuous
D288V12, continuous
D288V13, multiclass
                                             clus
vv                                            SMARCA4 MUTATED SMARCA4 WILD-TYPE
  CURRENT REFORMED SMOKER FOR < OR = 15 YEARS               8                54
  CURRENT REFORMED SMOKER FOR > 15 YEARS                    2                44
  CURRENT SMOKER                                            3                25
  LIFELONG NON-SMOKER                                       0                24
D288V14, continuous

Clustering(289) Variable = SLC39A12 MUTATION ANALYSIS
D289V1, survival
                    sevent
clus2                 0  1
  SLC39A12 MUTATED    7  3
  SLC39A12 WILD-TYPE 92 47
  SLC39A12 MUTATED SLC39A12 WILD-TYPE 
                10                139 
  SLC39A12 MUTATED SLC39A12 WILD-TYPE 
                 3                 47 
$`SLC39A12 MUTATED`
TCGA-05-4382 TCGA-38-4631 TCGA-44-2662 TCGA-49-4507 TCGA-49-6743 TCGA-50-5072 
       19.92        11.64        15.78         8.81        12.13         8.05 
TCGA-55-1596 TCGA-64-5781 TCGA-73-4668 TCGA-91-6829 
       45.17        39.52        15.35        41.33 

$`SLC39A12 WILD-TYPE`
TCGA-05-4249 TCGA-05-4250 TCGA-05-4384 TCGA-05-4390 TCGA-05-4396 TCGA-05-4397 
       38.07         3.98        14.01        37.02         9.96        24.03 
TCGA-05-4398 TCGA-05-4402 TCGA-05-4405 TCGA-05-4415 TCGA-05-4417 TCGA-05-4418 
       47.05         8.02        20.05         2.96        14.93         8.98 
TCGA-05-4420 TCGA-05-4424 TCGA-05-4426 TCGA-05-4427 TCGA-05-4430 TCGA-05-4432 
       29.95        30.02        26.01        26.01        25.02        25.02 
TCGA-05-4433 TCGA-05-4434 TCGA-05-5420 TCGA-05-5423 TCGA-05-5425 TCGA-05-5429 
       24.00        15.02         1.02         4.96         2.96         0.99 
TCGA-05-5715 TCGA-35-3615 TCGA-35-4122 TCGA-35-4123 TCGA-35-5375 TCGA-38-4625 
        2.04         0.46         7.36         5.95         8.68        47.61 
TCGA-38-4626 TCGA-38-4627 TCGA-38-4628 TCGA-38-4629 TCGA-38-4630 TCGA-38-4632 
       85.32        37.71        49.02        28.37        35.28        44.61 
TCGA-38-6178 TCGA-44-2655 TCGA-44-2656 TCGA-44-2657 TCGA-44-2659 TCGA-44-2661 
        5.19        18.87        19.10        13.15        17.39         3.39 
TCGA-44-2665 TCGA-44-2666 TCGA-44-2668 TCGA-44-3396 TCGA-44-3398 TCGA-44-3918 
       13.15         3.19         8.09        10.22         8.32         6.44 
TCGA-44-3919 TCGA-44-4112 TCGA-44-5643 TCGA-44-5645 TCGA-44-6144 TCGA-44-6145 
        6.21         4.60         3.48         6.84         0.30         3.35 
TCGA-44-6146 TCGA-44-6147 TCGA-44-6148 TCGA-44-6774 TCGA-44-6775 TCGA-44-6776 
        9.93         7.76         3.12         5.42         2.70        63.72 
TCGA-44-6777 TCGA-44-6778 TCGA-44-6779 TCGA-49-4486 TCGA-49-4487 TCGA-49-4488 
       32.45        36.49        16.41        76.21        28.11        28.57 
TCGA-49-4490 TCGA-49-4494 TCGA-49-4501 TCGA-49-4505 TCGA-49-4506 TCGA-49-4510 
       12.66        35.54        46.72        14.07        32.84        29.46 
TCGA-49-4512 TCGA-49-4514 TCGA-49-6742 TCGA-49-6744 TCGA-49-6745 TCGA-50-5044 
       29.75        43.20        15.02        12.99         4.93        20.48 
TCGA-50-5045 TCGA-50-5049 TCGA-50-5051 TCGA-50-5055 TCGA-50-5066 TCGA-50-5068 
       71.47        48.82        14.96        25.81         9.76        49.28 
TCGA-50-5930 TCGA-50-5931 TCGA-50-5932 TCGA-50-5933 TCGA-50-5935 TCGA-50-5936 
        9.27         8.78        35.87        77.88        21.47         8.45 
TCGA-50-5939 TCGA-50-5941 TCGA-50-5942 TCGA-50-5944 TCGA-50-5946 TCGA-50-6590 
       15.12         9.37         4.44        12.26        11.47        42.31 
TCGA-50-6591 TCGA-50-6592 TCGA-50-6593 TCGA-50-6594 TCGA-50-6595 TCGA-50-6597 
        3.88        25.51        11.05        12.16         6.21        33.37 
TCGA-55-1592 TCGA-55-1594 TCGA-55-1595 TCGA-55-5899 TCGA-55-6543 TCGA-55-6642 
       23.05        38.73        48.62         2.86         0.07        32.61 
TCGA-55-6712 TCGA-64-1676 TCGA-64-1677 TCGA-64-1678 TCGA-64-1680 TCGA-64-5774 
        0.79        56.81        20.65        39.09        37.02        83.84 
TCGA-64-5775 TCGA-64-5778 TCGA-64-5779 TCGA-64-5815 TCGA-67-3770 TCGA-67-3771 
        0.10        30.44        16.67         7.33         0.99         1.97 
TCGA-67-3772 TCGA-67-3773 TCGA-67-3774 TCGA-67-6215 TCGA-67-6216 TCGA-67-6217 
        0.59         2.04         0.59         0.89         0.69        13.87 
TCGA-71-6725 TCGA-73-4658 TCGA-73-4659 TCGA-73-4662 TCGA-73-4666 TCGA-73-4670 
        2.01        52.57        23.38        29.95        20.28         0.46 
TCGA-73-4675 TCGA-73-4676 TCGA-73-4677 TCGA-91-6828 TCGA-91-6831 TCGA-91-6835 
        1.32         4.01         1.25         1.22         1.28         1.15 
TCGA-91-6836 
        0.36 

  SLC39A12 MUTATED SLC39A12 WILD-TYPE 
              8.05               0.07 
  SLC39A12 MUTATED SLC39A12 WILD-TYPE 
             45.17              85.32 
  SLC39A12 MUTATED SLC39A12 WILD-TYPE 
            15.565             13.150 
[1] "8.1 - 45.2 (15.6)" "0.1 - 85.3 (13.2)"
        TCGA-05-4249         TCGA-05-4250         TCGA-05-4382 
"SLC39A12 WILD-TYPE" "SLC39A12 WILD-TYPE"   "SLC39A12 MUTATED" 
        TCGA-05-4384         TCGA-05-4390         TCGA-05-4396 
"SLC39A12 WILD-TYPE" "SLC39A12 WILD-TYPE" "SLC39A12 WILD-TYPE" 
        TCGA-05-4397         TCGA-05-4398         TCGA-05-4402 
"SLC39A12 WILD-TYPE" "SLC39A12 WILD-TYPE" "SLC39A12 WILD-TYPE" 
        TCGA-05-4405         TCGA-05-4415         TCGA-05-4417 
"SLC39A12 WILD-TYPE" "SLC39A12 WILD-TYPE" "SLC39A12 WILD-TYPE" 
        TCGA-05-4418         TCGA-05-4420         TCGA-05-4424 
"SLC39A12 WILD-TYPE" "SLC39A12 WILD-TYPE" "SLC39A12 WILD-TYPE" 
        TCGA-05-4426         TCGA-05-4427         TCGA-05-4430 
"SLC39A12 WILD-TYPE" "SLC39A12 WILD-TYPE" "SLC39A12 WILD-TYPE" 
        TCGA-05-4432         TCGA-05-4433         TCGA-05-4434 
"SLC39A12 WILD-TYPE" "SLC39A12 WILD-TYPE" "SLC39A12 WILD-TYPE" 
        TCGA-05-5420         TCGA-05-5423         TCGA-05-5425 
"SLC39A12 WILD-TYPE" "SLC39A12 WILD-TYPE" "SLC39A12 WILD-TYPE" 
        TCGA-05-5429         TCGA-05-5715         TCGA-35-3615 
"SLC39A12 WILD-TYPE" "SLC39A12 WILD-TYPE" "SLC39A12 WILD-TYPE" 
        TCGA-35-4122         TCGA-35-4123         TCGA-35-5375 
"SLC39A12 WILD-TYPE" "SLC39A12 WILD-TYPE" "SLC39A12 WILD-TYPE" 
        TCGA-38-4625         TCGA-38-4626         TCGA-38-4627 
"SLC39A12 WILD-TYPE" "SLC39A12 WILD-TYPE" "SLC39A12 WILD-TYPE" 
        TCGA-38-4628         TCGA-38-4629         TCGA-38-4630 
"SLC39A12 WILD-TYPE" "SLC39A12 WILD-TYPE" "SLC39A12 WILD-TYPE" 
        TCGA-38-4631         TCGA-38-4632         TCGA-38-6178 
  "SLC39A12 MUTATED" "SLC39A12 WILD-TYPE" "SLC39A12 WILD-TYPE" 
        TCGA-44-2655         TCGA-44-2656         TCGA-44-2657 
"SLC39A12 WILD-TYPE" "SLC39A12 WILD-TYPE" "SLC39A12 WILD-TYPE" 
        TCGA-44-2659         TCGA-44-2661         TCGA-44-2662 
"SLC39A12 WILD-TYPE" "SLC39A12 WILD-TYPE"   "SLC39A12 MUTATED" 
        TCGA-44-2665         TCGA-44-2666         TCGA-44-2668 
"SLC39A12 WILD-TYPE" "SLC39A12 WILD-TYPE" "SLC39A12 WILD-TYPE" 
        TCGA-44-3396         TCGA-44-3398         TCGA-44-3918 
"SLC39A12 WILD-TYPE" "SLC39A12 WILD-TYPE" "SLC39A12 WILD-TYPE" 
        TCGA-44-3919         TCGA-44-4112         TCGA-44-5643 
"SLC39A12 WILD-TYPE" "SLC39A12 WILD-TYPE" "SLC39A12 WILD-TYPE" 
        TCGA-44-5645         TCGA-44-6144         TCGA-44-6145 
"SLC39A12 WILD-TYPE" "SLC39A12 WILD-TYPE" "SLC39A12 WILD-TYPE" 
        TCGA-44-6146         TCGA-44-6147         TCGA-44-6148 
"SLC39A12 WILD-TYPE" "SLC39A12 WILD-TYPE" "SLC39A12 WILD-TYPE" 
        TCGA-44-6774         TCGA-44-6775         TCGA-44-6776 
"SLC39A12 WILD-TYPE" "SLC39A12 WILD-TYPE" "SLC39A12 WILD-TYPE" 
        TCGA-44-6777         TCGA-44-6778         TCGA-44-6779 
"SLC39A12 WILD-TYPE" "SLC39A12 WILD-TYPE" "SLC39A12 WILD-TYPE" 
        TCGA-49-4486         TCGA-49-4487         TCGA-49-4488 
"SLC39A12 WILD-TYPE" "SLC39A12 WILD-TYPE" "SLC39A12 WILD-TYPE" 
        TCGA-49-4490         TCGA-49-4494         TCGA-49-4501 
"SLC39A12 WILD-TYPE" "SLC39A12 WILD-TYPE" "SLC39A12 WILD-TYPE" 
        TCGA-49-4505         TCGA-49-4506         TCGA-49-4507 
"SLC39A12 WILD-TYPE" "SLC39A12 WILD-TYPE"   "SLC39A12 MUTATED" 
        TCGA-49-4510         TCGA-49-4512         TCGA-49-4514 
"SLC39A12 WILD-TYPE" "SLC39A12 WILD-TYPE" "SLC39A12 WILD-TYPE" 
        TCGA-49-6742         TCGA-49-6743         TCGA-49-6744 
"SLC39A12 WILD-TYPE"   "SLC39A12 MUTATED" "SLC39A12 WILD-TYPE" 
        TCGA-49-6745         TCGA-50-5044         TCGA-50-5045 
"SLC39A12 WILD-TYPE" "SLC39A12 WILD-TYPE" "SLC39A12 WILD-TYPE" 
        TCGA-50-5049         TCGA-50-5051         TCGA-50-5055 
"SLC39A12 WILD-TYPE" "SLC39A12 WILD-TYPE" "SLC39A12 WILD-TYPE" 
        TCGA-50-5066         TCGA-50-5068         TCGA-50-5072 
"SLC39A12 WILD-TYPE" "SLC39A12 WILD-TYPE"   "SLC39A12 MUTATED" 
        TCGA-50-5930         TCGA-50-5931         TCGA-50-5932 
"SLC39A12 WILD-TYPE" "SLC39A12 WILD-TYPE" "SLC39A12 WILD-TYPE" 
        TCGA-50-5933         TCGA-50-5935         TCGA-50-5936 
"SLC39A12 WILD-TYPE" "SLC39A12 WILD-TYPE" "SLC39A12 WILD-TYPE" 
        TCGA-50-5939         TCGA-50-5941         TCGA-50-5942 
"SLC39A12 WILD-TYPE" "SLC39A12 WILD-TYPE" "SLC39A12 WILD-TYPE" 
        TCGA-50-5944         TCGA-50-5946         TCGA-50-6590 
"SLC39A12 WILD-TYPE" "SLC39A12 WILD-TYPE" "SLC39A12 WILD-TYPE" 
        TCGA-50-6591         TCGA-50-6592         TCGA-50-6593 
"SLC39A12 WILD-TYPE" "SLC39A12 WILD-TYPE" "SLC39A12 WILD-TYPE" 
        TCGA-50-6594         TCGA-50-6595         TCGA-50-6597 
"SLC39A12 WILD-TYPE" "SLC39A12 WILD-TYPE" "SLC39A12 WILD-TYPE" 
        TCGA-55-1592         TCGA-55-1594         TCGA-55-1595 
"SLC39A12 WILD-TYPE" "SLC39A12 WILD-TYPE" "SLC39A12 WILD-TYPE" 
        TCGA-55-1596         TCGA-55-5899         TCGA-55-6543 
  "SLC39A12 MUTATED" "SLC39A12 WILD-TYPE" "SLC39A12 WILD-TYPE" 
        TCGA-55-6642         TCGA-55-6712         TCGA-64-1676 
"SLC39A12 WILD-TYPE" "SLC39A12 WILD-TYPE" "SLC39A12 WILD-TYPE" 
        TCGA-64-1677         TCGA-64-1678         TCGA-64-1680 
"SLC39A12 WILD-TYPE" "SLC39A12 WILD-TYPE" "SLC39A12 WILD-TYPE" 
        TCGA-64-5774         TCGA-64-5775         TCGA-64-5778 
"SLC39A12 WILD-TYPE" "SLC39A12 WILD-TYPE" "SLC39A12 WILD-TYPE" 
        TCGA-64-5779         TCGA-64-5781         TCGA-64-5815 
"SLC39A12 WILD-TYPE"   "SLC39A12 MUTATED" "SLC39A12 WILD-TYPE" 
        TCGA-67-3770         TCGA-67-3771         TCGA-67-3772 
"SLC39A12 WILD-TYPE" "SLC39A12 WILD-TYPE" "SLC39A12 WILD-TYPE" 
        TCGA-67-3773         TCGA-67-3774         TCGA-67-6215 
"SLC39A12 WILD-TYPE" "SLC39A12 WILD-TYPE" "SLC39A12 WILD-TYPE" 
        TCGA-67-6216         TCGA-67-6217         TCGA-71-6725 
"SLC39A12 WILD-TYPE" "SLC39A12 WILD-TYPE" "SLC39A12 WILD-TYPE" 
        TCGA-73-4658         TCGA-73-4659         TCGA-73-4662 
"SLC39A12 WILD-TYPE" "SLC39A12 WILD-TYPE" "SLC39A12 WILD-TYPE" 
        TCGA-73-4666         TCGA-73-4668         TCGA-73-4670 
"SLC39A12 WILD-TYPE"   "SLC39A12 MUTATED" "SLC39A12 WILD-TYPE" 
        TCGA-73-4675         TCGA-73-4676         TCGA-73-4677 
"SLC39A12 WILD-TYPE" "SLC39A12 WILD-TYPE" "SLC39A12 WILD-TYPE" 
        TCGA-91-6828         TCGA-91-6829         TCGA-91-6831 
"SLC39A12 WILD-TYPE"   "SLC39A12 MUTATED" "SLC39A12 WILD-TYPE" 
        TCGA-91-6835         TCGA-91-6836 
"SLC39A12 WILD-TYPE" "SLC39A12 WILD-TYPE" 
        TCGA-05-4249         TCGA-05-4250         TCGA-05-4382 
"SLC39A12 WILD-TYPE" "SLC39A12 WILD-TYPE"   "SLC39A12 MUTATED" 
        TCGA-05-4384         TCGA-05-4390         TCGA-05-4396 
"SLC39A12 WILD-TYPE" "SLC39A12 WILD-TYPE" "SLC39A12 WILD-TYPE" 
        TCGA-05-4397         TCGA-05-4398         TCGA-05-4402 
"SLC39A12 WILD-TYPE" "SLC39A12 WILD-TYPE" "SLC39A12 WILD-TYPE" 
        TCGA-05-4405         TCGA-05-4415         TCGA-05-4417 
"SLC39A12 WILD-TYPE" "SLC39A12 WILD-TYPE" "SLC39A12 WILD-TYPE" 
        TCGA-05-4418         TCGA-05-4420         TCGA-05-4424 
"SLC39A12 WILD-TYPE" "SLC39A12 WILD-TYPE" "SLC39A12 WILD-TYPE" 
        TCGA-05-4426         TCGA-05-4427         TCGA-05-4430 
"SLC39A12 WILD-TYPE" "SLC39A12 WILD-TYPE" "SLC39A12 WILD-TYPE" 
        TCGA-05-4432         TCGA-05-4433         TCGA-05-4434 
"SLC39A12 WILD-TYPE" "SLC39A12 WILD-TYPE" "SLC39A12 WILD-TYPE" 
        TCGA-05-5420         TCGA-05-5423         TCGA-05-5425 
"SLC39A12 WILD-TYPE" "SLC39A12 WILD-TYPE" "SLC39A12 WILD-TYPE" 
        TCGA-05-5429         TCGA-05-5715         TCGA-35-3615 
"SLC39A12 WILD-TYPE" "SLC39A12 WILD-TYPE" "SLC39A12 WILD-TYPE" 
        TCGA-35-4122         TCGA-35-4123         TCGA-35-5375 
"SLC39A12 WILD-TYPE" "SLC39A12 WILD-TYPE" "SLC39A12 WILD-TYPE" 
        TCGA-38-4625         TCGA-38-4626         TCGA-38-4627 
"SLC39A12 WILD-TYPE" "SLC39A12 WILD-TYPE" "SLC39A12 WILD-TYPE" 
        TCGA-38-4628         TCGA-38-4629         TCGA-38-4630 
"SLC39A12 WILD-TYPE" "SLC39A12 WILD-TYPE" "SLC39A12 WILD-TYPE" 
        TCGA-38-4631         TCGA-38-4632         TCGA-38-6178 
  "SLC39A12 MUTATED" "SLC39A12 WILD-TYPE" "SLC39A12 WILD-TYPE" 
        TCGA-44-2655         TCGA-44-2656         TCGA-44-2657 
"SLC39A12 WILD-TYPE" "SLC39A12 WILD-TYPE" "SLC39A12 WILD-TYPE" 
        TCGA-44-2659         TCGA-44-2661         TCGA-44-2662 
"SLC39A12 WILD-TYPE" "SLC39A12 WILD-TYPE"   "SLC39A12 MUTATED" 
        TCGA-44-2665         TCGA-44-2666         TCGA-44-2668 
"SLC39A12 WILD-TYPE" "SLC39A12 WILD-TYPE" "SLC39A12 WILD-TYPE" 
        TCGA-44-3396         TCGA-44-3398         TCGA-44-3918 
"SLC39A12 WILD-TYPE" "SLC39A12 WILD-TYPE" "SLC39A12 WILD-TYPE" 
        TCGA-44-3919         TCGA-44-4112         TCGA-44-5643 
"SLC39A12 WILD-TYPE" "SLC39A12 WILD-TYPE" "SLC39A12 WILD-TYPE" 
        TCGA-44-5645         TCGA-44-6144         TCGA-44-6145 
"SLC39A12 WILD-TYPE" "SLC39A12 WILD-TYPE" "SLC39A12 WILD-TYPE" 
        TCGA-44-6146         TCGA-44-6147         TCGA-44-6148 
"SLC39A12 WILD-TYPE" "SLC39A12 WILD-TYPE" "SLC39A12 WILD-TYPE" 
        TCGA-44-6774         TCGA-44-6775         TCGA-44-6776 
"SLC39A12 WILD-TYPE" "SLC39A12 WILD-TYPE" "SLC39A12 WILD-TYPE" 
        TCGA-44-6777         TCGA-44-6778         TCGA-44-6779 
"SLC39A12 WILD-TYPE" "SLC39A12 WILD-TYPE" "SLC39A12 WILD-TYPE" 
        TCGA-49-4486         TCGA-49-4487         TCGA-49-4488 
"SLC39A12 WILD-TYPE" "SLC39A12 WILD-TYPE" "SLC39A12 WILD-TYPE" 
        TCGA-49-4490         TCGA-49-4494         TCGA-49-4501 
"SLC39A12 WILD-TYPE" "SLC39A12 WILD-TYPE" "SLC39A12 WILD-TYPE" 
        TCGA-49-4505         TCGA-49-4506         TCGA-49-4507 
"SLC39A12 WILD-TYPE" "SLC39A12 WILD-TYPE"   "SLC39A12 MUTATED" 
        TCGA-49-4510         TCGA-49-4512         TCGA-49-4514 
"SLC39A12 WILD-TYPE" "SLC39A12 WILD-TYPE" "SLC39A12 WILD-TYPE" 
        TCGA-49-6742         TCGA-49-6743         TCGA-49-6744 
"SLC39A12 WILD-TYPE"   "SLC39A12 MUTATED" "SLC39A12 WILD-TYPE" 
        TCGA-49-6745         TCGA-50-5044         TCGA-50-5045 
"SLC39A12 WILD-TYPE" "SLC39A12 WILD-TYPE" "SLC39A12 WILD-TYPE" 
        TCGA-50-5049         TCGA-50-5051         TCGA-50-5055 
"SLC39A12 WILD-TYPE" "SLC39A12 WILD-TYPE" "SLC39A12 WILD-TYPE" 
        TCGA-50-5066         TCGA-50-5068         TCGA-50-5072 
"SLC39A12 WILD-TYPE" "SLC39A12 WILD-TYPE"   "SLC39A12 MUTATED" 
        TCGA-50-5930         TCGA-50-5931         TCGA-50-5932 
"SLC39A12 WILD-TYPE" "SLC39A12 WILD-TYPE" "SLC39A12 WILD-TYPE" 
        TCGA-50-5933         TCGA-50-5935         TCGA-50-5936 
"SLC39A12 WILD-TYPE" "SLC39A12 WILD-TYPE" "SLC39A12 WILD-TYPE" 
        TCGA-50-5939         TCGA-50-5941         TCGA-50-5942 
"SLC39A12 WILD-TYPE" "SLC39A12 WILD-TYPE" "SLC39A12 WILD-TYPE" 
        TCGA-50-5944         TCGA-50-5946         TCGA-50-6590 
"SLC39A12 WILD-TYPE" "SLC39A12 WILD-TYPE" "SLC39A12 WILD-TYPE" 
        TCGA-50-6591         TCGA-50-6592         TCGA-50-6593 
"SLC39A12 WILD-TYPE" "SLC39A12 WILD-TYPE" "SLC39A12 WILD-TYPE" 
        TCGA-50-6594         TCGA-50-6595         TCGA-50-6597 
"SLC39A12 WILD-TYPE" "SLC39A12 WILD-TYPE" "SLC39A12 WILD-TYPE" 
        TCGA-55-1592         TCGA-55-1594         TCGA-55-1595 
"SLC39A12 WILD-TYPE" "SLC39A12 WILD-TYPE" "SLC39A12 WILD-TYPE" 
        TCGA-55-1596         TCGA-55-5899         TCGA-55-6543 
  "SLC39A12 MUTATED" "SLC39A12 WILD-TYPE" "SLC39A12 WILD-TYPE" 
        TCGA-55-6642         TCGA-55-6712         TCGA-64-1676 
"SLC39A12 WILD-TYPE" "SLC39A12 WILD-TYPE" "SLC39A12 WILD-TYPE" 
        TCGA-64-1677         TCGA-64-1678         TCGA-64-1680 
"SLC39A12 WILD-TYPE" "SLC39A12 WILD-TYPE" "SLC39A12 WILD-TYPE" 
        TCGA-64-5774         TCGA-64-5775         TCGA-64-5778 
"SLC39A12 WILD-TYPE" "SLC39A12 WILD-TYPE" "SLC39A12 WILD-TYPE" 
        TCGA-64-5779         TCGA-64-5781         TCGA-64-5815 
"SLC39A12 WILD-TYPE"   "SLC39A12 MUTATED" "SLC39A12 WILD-TYPE" 
        TCGA-67-3770         TCGA-67-3771         TCGA-67-3772 
"SLC39A12 WILD-TYPE" "SLC39A12 WILD-TYPE" "SLC39A12 WILD-TYPE" 
        TCGA-67-3773         TCGA-67-3774         TCGA-67-6215 
"SLC39A12 WILD-TYPE" "SLC39A12 WILD-TYPE" "SLC39A12 WILD-TYPE" 
        TCGA-67-6216         TCGA-67-6217         TCGA-71-6725 
"SLC39A12 WILD-TYPE" "SLC39A12 WILD-TYPE" "SLC39A12 WILD-TYPE" 
        TCGA-73-4658         TCGA-73-4659         TCGA-73-4662 
"SLC39A12 WILD-TYPE" "SLC39A12 WILD-TYPE" "SLC39A12 WILD-TYPE" 
        TCGA-73-4666         TCGA-73-4668         TCGA-73-4670 
"SLC39A12 WILD-TYPE"   "SLC39A12 MUTATED" "SLC39A12 WILD-TYPE" 
        TCGA-73-4675         TCGA-73-4676         TCGA-73-4677 
"SLC39A12 WILD-TYPE" "SLC39A12 WILD-TYPE" "SLC39A12 WILD-TYPE" 
        TCGA-91-6828         TCGA-91-6829         TCGA-91-6831 
"SLC39A12 WILD-TYPE"   "SLC39A12 MUTATED" "SLC39A12 WILD-TYPE" 
        TCGA-91-6835         TCGA-91-6836 
"SLC39A12 WILD-TYPE" "SLC39A12 WILD-TYPE" 
        TCGA-05-4249         TCGA-05-4250         TCGA-05-4382 
"SLC39A12 WILD-TYPE" "SLC39A12 WILD-TYPE"   "SLC39A12 MUTATED" 
        TCGA-05-4384         TCGA-05-4390         TCGA-05-4396 
"SLC39A12 WILD-TYPE" "SLC39A12 WILD-TYPE" "SLC39A12 WILD-TYPE" 
        TCGA-05-4397         TCGA-05-4398         TCGA-05-4402 
"SLC39A12 WILD-TYPE" "SLC39A12 WILD-TYPE" "SLC39A12 WILD-TYPE" 
        TCGA-05-4405         TCGA-05-4415         TCGA-05-4417 
"SLC39A12 WILD-TYPE" "SLC39A12 WILD-TYPE" "SLC39A12 WILD-TYPE" 
        TCGA-05-4418         TCGA-05-4420         TCGA-05-4424 
"SLC39A12 WILD-TYPE" "SLC39A12 WILD-TYPE" "SLC39A12 WILD-TYPE" 
        TCGA-05-4426         TCGA-05-4427         TCGA-05-4430 
"SLC39A12 WILD-TYPE" "SLC39A12 WILD-TYPE" "SLC39A12 WILD-TYPE" 
        TCGA-05-4432         TCGA-05-4433         TCGA-05-4434 
"SLC39A12 WILD-TYPE" "SLC39A12 WILD-TYPE" "SLC39A12 WILD-TYPE" 
        TCGA-05-5420         TCGA-05-5423         TCGA-05-5425 
"SLC39A12 WILD-TYPE" "SLC39A12 WILD-TYPE" "SLC39A12 WILD-TYPE" 
        TCGA-05-5429         TCGA-05-5715         TCGA-35-3615 
"SLC39A12 WILD-TYPE" "SLC39A12 WILD-TYPE" "SLC39A12 WILD-TYPE" 
        TCGA-35-4122         TCGA-35-4123         TCGA-35-5375 
"SLC39A12 WILD-TYPE" "SLC39A12 WILD-TYPE" "SLC39A12 WILD-TYPE" 
        TCGA-38-4625         TCGA-38-4626         TCGA-38-4627 
"SLC39A12 WILD-TYPE" "SLC39A12 WILD-TYPE" "SLC39A12 WILD-TYPE" 
        TCGA-38-4628         TCGA-38-4629         TCGA-38-4630 
"SLC39A12 WILD-TYPE" "SLC39A12 WILD-TYPE" "SLC39A12 WILD-TYPE" 
        TCGA-38-4631         TCGA-38-4632         TCGA-38-6178 
  "SLC39A12 MUTATED" "SLC39A12 WILD-TYPE" "SLC39A12 WILD-TYPE" 
        TCGA-44-2655         TCGA-44-2656         TCGA-44-2657 
"SLC39A12 WILD-TYPE" "SLC39A12 WILD-TYPE" "SLC39A12 WILD-TYPE" 
        TCGA-44-2659         TCGA-44-2661         TCGA-44-2662 
"SLC39A12 WILD-TYPE" "SLC39A12 WILD-TYPE"   "SLC39A12 MUTATED" 
        TCGA-44-2665         TCGA-44-2666         TCGA-44-2668 
"SLC39A12 WILD-TYPE" "SLC39A12 WILD-TYPE" "SLC39A12 WILD-TYPE" 
        TCGA-44-3396         TCGA-44-3398         TCGA-44-3918 
"SLC39A12 WILD-TYPE" "SLC39A12 WILD-TYPE" "SLC39A12 WILD-TYPE" 
        TCGA-44-3919         TCGA-44-4112         TCGA-44-5643 
"SLC39A12 WILD-TYPE" "SLC39A12 WILD-TYPE" "SLC39A12 WILD-TYPE" 
        TCGA-44-5645         TCGA-44-6144         TCGA-44-6145 
"SLC39A12 WILD-TYPE" "SLC39A12 WILD-TYPE" "SLC39A12 WILD-TYPE" 
        TCGA-44-6146         TCGA-44-6147         TCGA-44-6148 
"SLC39A12 WILD-TYPE" "SLC39A12 WILD-TYPE" "SLC39A12 WILD-TYPE" 
        TCGA-44-6774         TCGA-44-6775         TCGA-44-6776 
"SLC39A12 WILD-TYPE" "SLC39A12 WILD-TYPE" "SLC39A12 WILD-TYPE" 
        TCGA-44-6777         TCGA-44-6778         TCGA-44-6779 
"SLC39A12 WILD-TYPE" "SLC39A12 WILD-TYPE" "SLC39A12 WILD-TYPE" 
        TCGA-49-4486         TCGA-49-4487         TCGA-49-4488 
"SLC39A12 WILD-TYPE" "SLC39A12 WILD-TYPE" "SLC39A12 WILD-TYPE" 
        TCGA-49-4490         TCGA-49-4494         TCGA-49-4501 
"SLC39A12 WILD-TYPE" "SLC39A12 WILD-TYPE" "SLC39A12 WILD-TYPE" 
        TCGA-49-4505         TCGA-49-4506         TCGA-49-4507 
"SLC39A12 WILD-TYPE" "SLC39A12 WILD-TYPE"   "SLC39A12 MUTATED" 
        TCGA-49-4510         TCGA-49-4512         TCGA-49-4514 
"SLC39A12 WILD-TYPE" "SLC39A12 WILD-TYPE" "SLC39A12 WILD-TYPE" 
        TCGA-49-6742         TCGA-49-6743         TCGA-49-6744 
"SLC39A12 WILD-TYPE"   "SLC39A12 MUTATED" "SLC39A12 WILD-TYPE" 
        TCGA-49-6745         TCGA-50-5044         TCGA-50-5045 
"SLC39A12 WILD-TYPE" "SLC39A12 WILD-TYPE" "SLC39A12 WILD-TYPE" 
        TCGA-50-5049         TCGA-50-5051         TCGA-50-5055 
"SLC39A12 WILD-TYPE" "SLC39A12 WILD-TYPE" "SLC39A12 WILD-TYPE" 
        TCGA-50-5066         TCGA-50-5068         TCGA-50-5072 
"SLC39A12 WILD-TYPE" "SLC39A12 WILD-TYPE"   "SLC39A12 MUTATED" 
        TCGA-50-5930         TCGA-50-5931         TCGA-50-5932 
"SLC39A12 WILD-TYPE" "SLC39A12 WILD-TYPE" "SLC39A12 WILD-TYPE" 
        TCGA-50-5933         TCGA-50-5935         TCGA-50-5936 
"SLC39A12 WILD-TYPE" "SLC39A12 WILD-TYPE" "SLC39A12 WILD-TYPE" 
        TCGA-50-5939         TCGA-50-5941         TCGA-50-5942 
"SLC39A12 WILD-TYPE" "SLC39A12 WILD-TYPE" "SLC39A12 WILD-TYPE" 
        TCGA-50-5944         TCGA-50-5946         TCGA-50-6590 
"SLC39A12 WILD-TYPE" "SLC39A12 WILD-TYPE" "SLC39A12 WILD-TYPE" 
        TCGA-50-6591         TCGA-50-6592         TCGA-50-6593 
"SLC39A12 WILD-TYPE" "SLC39A12 WILD-TYPE" "SLC39A12 WILD-TYPE" 
        TCGA-50-6594         TCGA-50-6595         TCGA-50-6597 
"SLC39A12 WILD-TYPE" "SLC39A12 WILD-TYPE" "SLC39A12 WILD-TYPE" 
        TCGA-55-1592         TCGA-55-1594         TCGA-55-1595 
"SLC39A12 WILD-TYPE" "SLC39A12 WILD-TYPE" "SLC39A12 WILD-TYPE" 
        TCGA-55-1596         TCGA-55-5899         TCGA-55-6543 
  "SLC39A12 MUTATED" "SLC39A12 WILD-TYPE" "SLC39A12 WILD-TYPE" 
        TCGA-55-6642         TCGA-55-6712         TCGA-64-1676 
"SLC39A12 WILD-TYPE" "SLC39A12 WILD-TYPE" "SLC39A12 WILD-TYPE" 
        TCGA-64-1677         TCGA-64-1678         TCGA-64-1680 
"SLC39A12 WILD-TYPE" "SLC39A12 WILD-TYPE" "SLC39A12 WILD-TYPE" 
        TCGA-64-5774         TCGA-64-5775         TCGA-64-5778 
"SLC39A12 WILD-TYPE" "SLC39A12 WILD-TYPE" "SLC39A12 WILD-TYPE" 
        TCGA-64-5779         TCGA-64-5781         TCGA-64-5815 
"SLC39A12 WILD-TYPE"   "SLC39A12 MUTATED" "SLC39A12 WILD-TYPE" 
        TCGA-67-3770         TCGA-67-3771         TCGA-67-3772 
"SLC39A12 WILD-TYPE" "SLC39A12 WILD-TYPE" "SLC39A12 WILD-TYPE" 
        TCGA-67-3773         TCGA-67-3774         TCGA-67-6215 
"SLC39A12 WILD-TYPE" "SLC39A12 WILD-TYPE" "SLC39A12 WILD-TYPE" 
        TCGA-67-6216         TCGA-67-6217         TCGA-71-6725 
"SLC39A12 WILD-TYPE" "SLC39A12 WILD-TYPE" "SLC39A12 WILD-TYPE" 
        TCGA-73-4658         TCGA-73-4659         TCGA-73-4662 
"SLC39A12 WILD-TYPE" "SLC39A12 WILD-TYPE" "SLC39A12 WILD-TYPE" 
        TCGA-73-4666         TCGA-73-4668         TCGA-73-4670 
"SLC39A12 WILD-TYPE"   "SLC39A12 MUTATED" "SLC39A12 WILD-TYPE" 
        TCGA-73-4675         TCGA-73-4676         TCGA-73-4677 
"SLC39A12 WILD-TYPE" "SLC39A12 WILD-TYPE" "SLC39A12 WILD-TYPE" 
        TCGA-91-6828         TCGA-91-6829         TCGA-91-6831 
"SLC39A12 WILD-TYPE"   "SLC39A12 MUTATED" "SLC39A12 WILD-TYPE" 
        TCGA-91-6835         TCGA-91-6836 
"SLC39A12 WILD-TYPE" "SLC39A12 WILD-TYPE" 
[1] "hr=" "1.2"
D289V2, continuous
D289V3, binary
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  SLC39A12 MUTATED      5    6
  SLC39A12 WILD-TYPE   88   73
        clus
vv       SLC39A12 MUTATED SLC39A12 WILD-TYPE
  FEMALE                5                 88
  MALE                  6                 73
D289V4, continuous
[1] "Remove cluster labels:" "SLC39A12 MUTATED"      
clus
  SLC39A12 MUTATED SLC39A12 WILD-TYPE 
                 1                 11 
        TCGA-35-4122         TCGA-35-4123         TCGA-35-5375 
"SLC39A12 WILD-TYPE" "SLC39A12 WILD-TYPE" "SLC39A12 WILD-TYPE" 
        TCGA-64-1677         TCGA-64-5778         TCGA-71-6725 
"SLC39A12 WILD-TYPE" "SLC39A12 WILD-TYPE" "SLC39A12 WILD-TYPE" 
        TCGA-73-4659         TCGA-73-4662         TCGA-73-4666 
"SLC39A12 WILD-TYPE" "SLC39A12 WILD-TYPE" "SLC39A12 WILD-TYPE" 
        TCGA-73-4676         TCGA-75-5122 
"SLC39A12 WILD-TYPE" "SLC39A12 WILD-TYPE" 
D289V5, multiclass
D289V6, multiclass
    clus
vv   SLC39A12 MUTATED SLC39A12 WILD-TYPE
  T1                1                 40
  T2                9                 99
  T3                1                 13
  T4                0                  8
D289V7, multiclass
       clus
vv      SLC39A12 MUTATED SLC39A12 WILD-TYPE
  N0                   6                 89
  N1                   3                 34
  N2+N3                2                 33
D289V8, multiclass
    clus
vv   SLC39A12 MUTATED SLC39A12 WILD-TYPE
  M0                9                128
  M1                0                  9
  MX                2                 20
D289V9, multiclass
     clus
vv    SLC39A12 MUTATED SLC39A12 WILD-TYPE
  I                  6                 82
  II                 2                 31
  III                3                 36
  IV                 0                  9
D289V10, binary
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  SLC39A12 MUTATED      2    9
  SLC39A12 WILD-TYPE   14  147
     clus
vv    SLC39A12 MUTATED SLC39A12 WILD-TYPE
  NO                 2                 14
  YES                9                147
D289V11, continuous
D289V12, continuous
D289V13, multiclass
                                             clus
vv                                            SLC39A12 MUTATED
  CURRENT REFORMED SMOKER FOR < OR = 15 YEARS                8
  CURRENT REFORMED SMOKER FOR > 15 YEARS                     2
  CURRENT SMOKER                                             1
  LIFELONG NON-SMOKER                                        0
                                             clus
vv                                            SLC39A12 WILD-TYPE
  CURRENT REFORMED SMOKER FOR < OR = 15 YEARS                 54
  CURRENT REFORMED SMOKER FOR > 15 YEARS                      44
  CURRENT SMOKER                                              27
  LIFELONG NON-SMOKER                                         24
D289V14, continuous

Clustering(290) Variable = OR52K1 MUTATION ANALYSIS
D290V1, survival
                  sevent
clus2               0  1
  OR52K1 MUTATED    5  1
  OR52K1 WILD-TYPE 94 49
  OR52K1 MUTATED OR52K1 WILD-TYPE 
               6              143 
  OR52K1 MUTATED OR52K1 WILD-TYPE 
               1               49 
$`OR52K1 MUTATED`
TCGA-05-4382 TCGA-05-4396 TCGA-05-4398 TCGA-05-4430 TCGA-44-2656 TCGA-73-4666 
       19.92         9.96        47.05        25.02        19.10        20.28 

$`OR52K1 WILD-TYPE`
TCGA-05-4249 TCGA-05-4250 TCGA-05-4384 TCGA-05-4390 TCGA-05-4397 TCGA-05-4402 
       38.07         3.98        14.01        37.02        24.03         8.02 
TCGA-05-4405 TCGA-05-4415 TCGA-05-4417 TCGA-05-4418 TCGA-05-4420 TCGA-05-4424 
       20.05         2.96        14.93         8.98        29.95        30.02 
TCGA-05-4426 TCGA-05-4427 TCGA-05-4432 TCGA-05-4433 TCGA-05-4434 TCGA-05-5420 
       26.01        26.01        25.02        24.00        15.02         1.02 
TCGA-05-5423 TCGA-05-5425 TCGA-05-5429 TCGA-05-5715 TCGA-35-3615 TCGA-35-4122 
        4.96         2.96         0.99         2.04         0.46         7.36 
TCGA-35-4123 TCGA-35-5375 TCGA-38-4625 TCGA-38-4626 TCGA-38-4627 TCGA-38-4628 
        5.95         8.68        47.61        85.32        37.71        49.02 
TCGA-38-4629 TCGA-38-4630 TCGA-38-4631 TCGA-38-4632 TCGA-38-6178 TCGA-44-2655 
       28.37        35.28        11.64        44.61         5.19        18.87 
TCGA-44-2657 TCGA-44-2659 TCGA-44-2661 TCGA-44-2662 TCGA-44-2665 TCGA-44-2666 
       13.15        17.39         3.39        15.78        13.15         3.19 
TCGA-44-2668 TCGA-44-3396 TCGA-44-3398 TCGA-44-3918 TCGA-44-3919 TCGA-44-4112 
        8.09        10.22         8.32         6.44         6.21         4.60 
TCGA-44-5643 TCGA-44-5645 TCGA-44-6144 TCGA-44-6145 TCGA-44-6146 TCGA-44-6147 
        3.48         6.84         0.30         3.35         9.93         7.76 
TCGA-44-6148 TCGA-44-6774 TCGA-44-6775 TCGA-44-6776 TCGA-44-6777 TCGA-44-6778 
        3.12         5.42         2.70        63.72        32.45        36.49 
TCGA-44-6779 TCGA-49-4486 TCGA-49-4487 TCGA-49-4488 TCGA-49-4490 TCGA-49-4494 
       16.41        76.21        28.11        28.57        12.66        35.54 
TCGA-49-4501 TCGA-49-4505 TCGA-49-4506 TCGA-49-4507 TCGA-49-4510 TCGA-49-4512 
       46.72        14.07        32.84         8.81        29.46        29.75 
TCGA-49-4514 TCGA-49-6742 TCGA-49-6743 TCGA-49-6744 TCGA-49-6745 TCGA-50-5044 
       43.20        15.02        12.13        12.99         4.93        20.48 
TCGA-50-5045 TCGA-50-5049 TCGA-50-5051 TCGA-50-5055 TCGA-50-5066 TCGA-50-5068 
       71.47        48.82        14.96        25.81         9.76        49.28 
TCGA-50-5072 TCGA-50-5930 TCGA-50-5931 TCGA-50-5932 TCGA-50-5933 TCGA-50-5935 
        8.05         9.27         8.78        35.87        77.88        21.47 
TCGA-50-5936 TCGA-50-5939 TCGA-50-5941 TCGA-50-5942 TCGA-50-5944 TCGA-50-5946 
        8.45        15.12         9.37         4.44        12.26        11.47 
TCGA-50-6590 TCGA-50-6591 TCGA-50-6592 TCGA-50-6593 TCGA-50-6594 TCGA-50-6595 
       42.31         3.88        25.51        11.05        12.16         6.21 
TCGA-50-6597 TCGA-55-1592 TCGA-55-1594 TCGA-55-1595 TCGA-55-1596 TCGA-55-5899 
       33.37        23.05        38.73        48.62        45.17         2.86 
TCGA-55-6543 TCGA-55-6642 TCGA-55-6712 TCGA-64-1676 TCGA-64-1677 TCGA-64-1678 
        0.07        32.61         0.79        56.81        20.65        39.09 
TCGA-64-1680 TCGA-64-5774 TCGA-64-5775 TCGA-64-5778 TCGA-64-5779 TCGA-64-5781 
       37.02        83.84         0.10        30.44        16.67        39.52 
TCGA-64-5815 TCGA-67-3770 TCGA-67-3771 TCGA-67-3772 TCGA-67-3773 TCGA-67-3774 
        7.33         0.99         1.97         0.59         2.04         0.59 
TCGA-67-6215 TCGA-67-6216 TCGA-67-6217 TCGA-71-6725 TCGA-73-4658 TCGA-73-4659 
        0.89         0.69        13.87         2.01        52.57        23.38 
TCGA-73-4662 TCGA-73-4668 TCGA-73-4670 TCGA-73-4675 TCGA-73-4676 TCGA-73-4677 
       29.95        15.35         0.46         1.32         4.01         1.25 
TCGA-91-6828 TCGA-91-6829 TCGA-91-6831 TCGA-91-6835 TCGA-91-6836 
        1.22        41.33         1.28         1.15         0.36 

  OR52K1 MUTATED OR52K1 WILD-TYPE 
            9.96             0.07 
  OR52K1 MUTATED OR52K1 WILD-TYPE 
           47.05            85.32 
  OR52K1 MUTATED OR52K1 WILD-TYPE 
           20.10            13.15 
[1] "10.0 - 47.0 (20.1)" "0.1 - 85.3 (13.2)" 
      TCGA-05-4249       TCGA-05-4250       TCGA-05-4382       TCGA-05-4384 
"OR52K1 WILD-TYPE" "OR52K1 WILD-TYPE"   "OR52K1 MUTATED" "OR52K1 WILD-TYPE" 
      TCGA-05-4390       TCGA-05-4396       TCGA-05-4397       TCGA-05-4398 
"OR52K1 WILD-TYPE"   "OR52K1 MUTATED" "OR52K1 WILD-TYPE"   "OR52K1 MUTATED" 
      TCGA-05-4402       TCGA-05-4405       TCGA-05-4415       TCGA-05-4417 
"OR52K1 WILD-TYPE" "OR52K1 WILD-TYPE" "OR52K1 WILD-TYPE" "OR52K1 WILD-TYPE" 
      TCGA-05-4418       TCGA-05-4420       TCGA-05-4424       TCGA-05-4426 
"OR52K1 WILD-TYPE" "OR52K1 WILD-TYPE" "OR52K1 WILD-TYPE" "OR52K1 WILD-TYPE" 
      TCGA-05-4427       TCGA-05-4430       TCGA-05-4432       TCGA-05-4433 
"OR52K1 WILD-TYPE"   "OR52K1 MUTATED" "OR52K1 WILD-TYPE" "OR52K1 WILD-TYPE" 
      TCGA-05-4434       TCGA-05-5420       TCGA-05-5423       TCGA-05-5425 
"OR52K1 WILD-TYPE" "OR52K1 WILD-TYPE" "OR52K1 WILD-TYPE" "OR52K1 WILD-TYPE" 
      TCGA-05-5429       TCGA-05-5715       TCGA-35-3615       TCGA-35-4122 
"OR52K1 WILD-TYPE" "OR52K1 WILD-TYPE" "OR52K1 WILD-TYPE" "OR52K1 WILD-TYPE" 
      TCGA-35-4123       TCGA-35-5375       TCGA-38-4625       TCGA-38-4626 
"OR52K1 WILD-TYPE" "OR52K1 WILD-TYPE" "OR52K1 WILD-TYPE" "OR52K1 WILD-TYPE" 
      TCGA-38-4627       TCGA-38-4628       TCGA-38-4629       TCGA-38-4630 
"OR52K1 WILD-TYPE" "OR52K1 WILD-TYPE" "OR52K1 WILD-TYPE" "OR52K1 WILD-TYPE" 
      TCGA-38-4631       TCGA-38-4632       TCGA-38-6178       TCGA-44-2655 
"OR52K1 WILD-TYPE" "OR52K1 WILD-TYPE" "OR52K1 WILD-TYPE" "OR52K1 WILD-TYPE" 
      TCGA-44-2656       TCGA-44-2657       TCGA-44-2659       TCGA-44-2661 
  "OR52K1 MUTATED" "OR52K1 WILD-TYPE" "OR52K1 WILD-TYPE" "OR52K1 WILD-TYPE" 
      TCGA-44-2662       TCGA-44-2665       TCGA-44-2666       TCGA-44-2668 
"OR52K1 WILD-TYPE" "OR52K1 WILD-TYPE" "OR52K1 WILD-TYPE" "OR52K1 WILD-TYPE" 
      TCGA-44-3396       TCGA-44-3398       TCGA-44-3918       TCGA-44-3919 
"OR52K1 WILD-TYPE" "OR52K1 WILD-TYPE" "OR52K1 WILD-TYPE" "OR52K1 WILD-TYPE" 
      TCGA-44-4112       TCGA-44-5643       TCGA-44-5645       TCGA-44-6144 
"OR52K1 WILD-TYPE" "OR52K1 WILD-TYPE" "OR52K1 WILD-TYPE" "OR52K1 WILD-TYPE" 
      TCGA-44-6145       TCGA-44-6146       TCGA-44-6147       TCGA-44-6148 
"OR52K1 WILD-TYPE" "OR52K1 WILD-TYPE" "OR52K1 WILD-TYPE" "OR52K1 WILD-TYPE" 
      TCGA-44-6774       TCGA-44-6775       TCGA-44-6776       TCGA-44-6777 
"OR52K1 WILD-TYPE" "OR52K1 WILD-TYPE" "OR52K1 WILD-TYPE" "OR52K1 WILD-TYPE" 
      TCGA-44-6778       TCGA-44-6779       TCGA-49-4486       TCGA-49-4487 
"OR52K1 WILD-TYPE" "OR52K1 WILD-TYPE" "OR52K1 WILD-TYPE" "OR52K1 WILD-TYPE" 
      TCGA-49-4488       TCGA-49-4490       TCGA-49-4494       TCGA-49-4501 
"OR52K1 WILD-TYPE" "OR52K1 WILD-TYPE" "OR52K1 WILD-TYPE" "OR52K1 WILD-TYPE" 
      TCGA-49-4505       TCGA-49-4506       TCGA-49-4507       TCGA-49-4510 
"OR52K1 WILD-TYPE" "OR52K1 WILD-TYPE" "OR52K1 WILD-TYPE" "OR52K1 WILD-TYPE" 
      TCGA-49-4512       TCGA-49-4514       TCGA-49-6742       TCGA-49-6743 
"OR52K1 WILD-TYPE" "OR52K1 WILD-TYPE" "OR52K1 WILD-TYPE" "OR52K1 WILD-TYPE" 
      TCGA-49-6744       TCGA-49-6745       TCGA-50-5044       TCGA-50-5045 
"OR52K1 WILD-TYPE" "OR52K1 WILD-TYPE" "OR52K1 WILD-TYPE" "OR52K1 WILD-TYPE" 
      TCGA-50-5049       TCGA-50-5051       TCGA-50-5055       TCGA-50-5066 
"OR52K1 WILD-TYPE" "OR52K1 WILD-TYPE" "OR52K1 WILD-TYPE" "OR52K1 WILD-TYPE" 
      TCGA-50-5068       TCGA-50-5072       TCGA-50-5930       TCGA-50-5931 
"OR52K1 WILD-TYPE" "OR52K1 WILD-TYPE" "OR52K1 WILD-TYPE" "OR52K1 WILD-TYPE" 
      TCGA-50-5932       TCGA-50-5933       TCGA-50-5935       TCGA-50-5936 
"OR52K1 WILD-TYPE" "OR52K1 WILD-TYPE" "OR52K1 WILD-TYPE" "OR52K1 WILD-TYPE" 
      TCGA-50-5939       TCGA-50-5941       TCGA-50-5942       TCGA-50-5944 
"OR52K1 WILD-TYPE" "OR52K1 WILD-TYPE" "OR52K1 WILD-TYPE" "OR52K1 WILD-TYPE" 
      TCGA-50-5946       TCGA-50-6590       TCGA-50-6591       TCGA-50-6592 
"OR52K1 WILD-TYPE" "OR52K1 WILD-TYPE" "OR52K1 WILD-TYPE" "OR52K1 WILD-TYPE" 
      TCGA-50-6593       TCGA-50-6594       TCGA-50-6595       TCGA-50-6597 
"OR52K1 WILD-TYPE" "OR52K1 WILD-TYPE" "OR52K1 WILD-TYPE" "OR52K1 WILD-TYPE" 
      TCGA-55-1592       TCGA-55-1594       TCGA-55-1595       TCGA-55-1596 
"OR52K1 WILD-TYPE" "OR52K1 WILD-TYPE" "OR52K1 WILD-TYPE" "OR52K1 WILD-TYPE" 
      TCGA-55-5899       TCGA-55-6543       TCGA-55-6642       TCGA-55-6712 
"OR52K1 WILD-TYPE" "OR52K1 WILD-TYPE" "OR52K1 WILD-TYPE" "OR52K1 WILD-TYPE" 
      TCGA-64-1676       TCGA-64-1677       TCGA-64-1678       TCGA-64-1680 
"OR52K1 WILD-TYPE" "OR52K1 WILD-TYPE" "OR52K1 WILD-TYPE" "OR52K1 WILD-TYPE" 
      TCGA-64-5774       TCGA-64-5775       TCGA-64-5778       TCGA-64-5779 
"OR52K1 WILD-TYPE" "OR52K1 WILD-TYPE" "OR52K1 WILD-TYPE" "OR52K1 WILD-TYPE" 
      TCGA-64-5781       TCGA-64-5815       TCGA-67-3770       TCGA-67-3771 
"OR52K1 WILD-TYPE" "OR52K1 WILD-TYPE" "OR52K1 WILD-TYPE" "OR52K1 WILD-TYPE" 
      TCGA-67-3772       TCGA-67-3773       TCGA-67-3774       TCGA-67-6215 
"OR52K1 WILD-TYPE" "OR52K1 WILD-TYPE" "OR52K1 WILD-TYPE" "OR52K1 WILD-TYPE" 
      TCGA-67-6216       TCGA-67-6217       TCGA-71-6725       TCGA-73-4658 
"OR52K1 WILD-TYPE" "OR52K1 WILD-TYPE" "OR52K1 WILD-TYPE" "OR52K1 WILD-TYPE" 
      TCGA-73-4659       TCGA-73-4662       TCGA-73-4666       TCGA-73-4668 
"OR52K1 WILD-TYPE" "OR52K1 WILD-TYPE"   "OR52K1 MUTATED" "OR52K1 WILD-TYPE" 
      TCGA-73-4670       TCGA-73-4675       TCGA-73-4676       TCGA-73-4677 
"OR52K1 WILD-TYPE" "OR52K1 WILD-TYPE" "OR52K1 WILD-TYPE" "OR52K1 WILD-TYPE" 
      TCGA-91-6828       TCGA-91-6829       TCGA-91-6831       TCGA-91-6835 
"OR52K1 WILD-TYPE" "OR52K1 WILD-TYPE" "OR52K1 WILD-TYPE" "OR52K1 WILD-TYPE" 
      TCGA-91-6836 
"OR52K1 WILD-TYPE" 
      TCGA-05-4249       TCGA-05-4250       TCGA-05-4382       TCGA-05-4384 
"OR52K1 WILD-TYPE" "OR52K1 WILD-TYPE"   "OR52K1 MUTATED" "OR52K1 WILD-TYPE" 
      TCGA-05-4390       TCGA-05-4396       TCGA-05-4397       TCGA-05-4398 
"OR52K1 WILD-TYPE"   "OR52K1 MUTATED" "OR52K1 WILD-TYPE"   "OR52K1 MUTATED" 
      TCGA-05-4402       TCGA-05-4405       TCGA-05-4415       TCGA-05-4417 
"OR52K1 WILD-TYPE" "OR52K1 WILD-TYPE" "OR52K1 WILD-TYPE" "OR52K1 WILD-TYPE" 
      TCGA-05-4418       TCGA-05-4420       TCGA-05-4424       TCGA-05-4426 
"OR52K1 WILD-TYPE" "OR52K1 WILD-TYPE" "OR52K1 WILD-TYPE" "OR52K1 WILD-TYPE" 
      TCGA-05-4427       TCGA-05-4430       TCGA-05-4432       TCGA-05-4433 
"OR52K1 WILD-TYPE"   "OR52K1 MUTATED" "OR52K1 WILD-TYPE" "OR52K1 WILD-TYPE" 
      TCGA-05-4434       TCGA-05-5420       TCGA-05-5423       TCGA-05-5425 
"OR52K1 WILD-TYPE" "OR52K1 WILD-TYPE" "OR52K1 WILD-TYPE" "OR52K1 WILD-TYPE" 
      TCGA-05-5429       TCGA-05-5715       TCGA-35-3615       TCGA-35-4122 
"OR52K1 WILD-TYPE" "OR52K1 WILD-TYPE" "OR52K1 WILD-TYPE" "OR52K1 WILD-TYPE" 
      TCGA-35-4123       TCGA-35-5375       TCGA-38-4625       TCGA-38-4626 
"OR52K1 WILD-TYPE" "OR52K1 WILD-TYPE" "OR52K1 WILD-TYPE" "OR52K1 WILD-TYPE" 
      TCGA-38-4627       TCGA-38-4628       TCGA-38-4629       TCGA-38-4630 
"OR52K1 WILD-TYPE" "OR52K1 WILD-TYPE" "OR52K1 WILD-TYPE" "OR52K1 WILD-TYPE" 
      TCGA-38-4631       TCGA-38-4632       TCGA-38-6178       TCGA-44-2655 
"OR52K1 WILD-TYPE" "OR52K1 WILD-TYPE" "OR52K1 WILD-TYPE" "OR52K1 WILD-TYPE" 
      TCGA-44-2656       TCGA-44-2657       TCGA-44-2659       TCGA-44-2661 
  "OR52K1 MUTATED" "OR52K1 WILD-TYPE" "OR52K1 WILD-TYPE" "OR52K1 WILD-TYPE" 
      TCGA-44-2662       TCGA-44-2665       TCGA-44-2666       TCGA-44-2668 
"OR52K1 WILD-TYPE" "OR52K1 WILD-TYPE" "OR52K1 WILD-TYPE" "OR52K1 WILD-TYPE" 
      TCGA-44-3396       TCGA-44-3398       TCGA-44-3918       TCGA-44-3919 
"OR52K1 WILD-TYPE" "OR52K1 WILD-TYPE" "OR52K1 WILD-TYPE" "OR52K1 WILD-TYPE" 
      TCGA-44-4112       TCGA-44-5643       TCGA-44-5645       TCGA-44-6144 
"OR52K1 WILD-TYPE" "OR52K1 WILD-TYPE" "OR52K1 WILD-TYPE" "OR52K1 WILD-TYPE" 
      TCGA-44-6145       TCGA-44-6146       TCGA-44-6147       TCGA-44-6148 
"OR52K1 WILD-TYPE" "OR52K1 WILD-TYPE" "OR52K1 WILD-TYPE" "OR52K1 WILD-TYPE" 
      TCGA-44-6774       TCGA-44-6775       TCGA-44-6776       TCGA-44-6777 
"OR52K1 WILD-TYPE" "OR52K1 WILD-TYPE" "OR52K1 WILD-TYPE" "OR52K1 WILD-TYPE" 
      TCGA-44-6778       TCGA-44-6779       TCGA-49-4486       TCGA-49-4487 
"OR52K1 WILD-TYPE" "OR52K1 WILD-TYPE" "OR52K1 WILD-TYPE" "OR52K1 WILD-TYPE" 
      TCGA-49-4488       TCGA-49-4490       TCGA-49-4494       TCGA-49-4501 
"OR52K1 WILD-TYPE" "OR52K1 WILD-TYPE" "OR52K1 WILD-TYPE" "OR52K1 WILD-TYPE" 
      TCGA-49-4505       TCGA-49-4506       TCGA-49-4507       TCGA-49-4510 
"OR52K1 WILD-TYPE" "OR52K1 WILD-TYPE" "OR52K1 WILD-TYPE" "OR52K1 WILD-TYPE" 
      TCGA-49-4512       TCGA-49-4514       TCGA-49-6742       TCGA-49-6743 
"OR52K1 WILD-TYPE" "OR52K1 WILD-TYPE" "OR52K1 WILD-TYPE" "OR52K1 WILD-TYPE" 
      TCGA-49-6744       TCGA-49-6745       TCGA-50-5044       TCGA-50-5045 
"OR52K1 WILD-TYPE" "OR52K1 WILD-TYPE" "OR52K1 WILD-TYPE" "OR52K1 WILD-TYPE" 
      TCGA-50-5049       TCGA-50-5051       TCGA-50-5055       TCGA-50-5066 
"OR52K1 WILD-TYPE" "OR52K1 WILD-TYPE" "OR52K1 WILD-TYPE" "OR52K1 WILD-TYPE" 
      TCGA-50-5068       TCGA-50-5072       TCGA-50-5930       TCGA-50-5931 
"OR52K1 WILD-TYPE" "OR52K1 WILD-TYPE" "OR52K1 WILD-TYPE" "OR52K1 WILD-TYPE" 
      TCGA-50-5932       TCGA-50-5933       TCGA-50-5935       TCGA-50-5936 
"OR52K1 WILD-TYPE" "OR52K1 WILD-TYPE" "OR52K1 WILD-TYPE" "OR52K1 WILD-TYPE" 
      TCGA-50-5939       TCGA-50-5941       TCGA-50-5942       TCGA-50-5944 
"OR52K1 WILD-TYPE" "OR52K1 WILD-TYPE" "OR52K1 WILD-TYPE" "OR52K1 WILD-TYPE" 
      TCGA-50-5946       TCGA-50-6590       TCGA-50-6591       TCGA-50-6592 
"OR52K1 WILD-TYPE" "OR52K1 WILD-TYPE" "OR52K1 WILD-TYPE" "OR52K1 WILD-TYPE" 
      TCGA-50-6593       TCGA-50-6594       TCGA-50-6595       TCGA-50-6597 
"OR52K1 WILD-TYPE" "OR52K1 WILD-TYPE" "OR52K1 WILD-TYPE" "OR52K1 WILD-TYPE" 
      TCGA-55-1592       TCGA-55-1594       TCGA-55-1595       TCGA-55-1596 
"OR52K1 WILD-TYPE" "OR52K1 WILD-TYPE" "OR52K1 WILD-TYPE" "OR52K1 WILD-TYPE" 
      TCGA-55-5899       TCGA-55-6543       TCGA-55-6642       TCGA-55-6712 
"OR52K1 WILD-TYPE" "OR52K1 WILD-TYPE" "OR52K1 WILD-TYPE" "OR52K1 WILD-TYPE" 
      TCGA-64-1676       TCGA-64-1677       TCGA-64-1678       TCGA-64-1680 
"OR52K1 WILD-TYPE" "OR52K1 WILD-TYPE" "OR52K1 WILD-TYPE" "OR52K1 WILD-TYPE" 
      TCGA-64-5774       TCGA-64-5775       TCGA-64-5778       TCGA-64-5779 
"OR52K1 WILD-TYPE" "OR52K1 WILD-TYPE" "OR52K1 WILD-TYPE" "OR52K1 WILD-TYPE" 
      TCGA-64-5781       TCGA-64-5815       TCGA-67-3770       TCGA-67-3771 
"OR52K1 WILD-TYPE" "OR52K1 WILD-TYPE" "OR52K1 WILD-TYPE" "OR52K1 WILD-TYPE" 
      TCGA-67-3772       TCGA-67-3773       TCGA-67-3774       TCGA-67-6215 
"OR52K1 WILD-TYPE" "OR52K1 WILD-TYPE" "OR52K1 WILD-TYPE" "OR52K1 WILD-TYPE" 
      TCGA-67-6216       TCGA-67-6217       TCGA-71-6725       TCGA-73-4658 
"OR52K1 WILD-TYPE" "OR52K1 WILD-TYPE" "OR52K1 WILD-TYPE" "OR52K1 WILD-TYPE" 
      TCGA-73-4659       TCGA-73-4662       TCGA-73-4666       TCGA-73-4668 
"OR52K1 WILD-TYPE" "OR52K1 WILD-TYPE"   "OR52K1 MUTATED" "OR52K1 WILD-TYPE" 
      TCGA-73-4670       TCGA-73-4675       TCGA-73-4676       TCGA-73-4677 
"OR52K1 WILD-TYPE" "OR52K1 WILD-TYPE" "OR52K1 WILD-TYPE" "OR52K1 WILD-TYPE" 
      TCGA-91-6828       TCGA-91-6829       TCGA-91-6831       TCGA-91-6835 
"OR52K1 WILD-TYPE" "OR52K1 WILD-TYPE" "OR52K1 WILD-TYPE" "OR52K1 WILD-TYPE" 
      TCGA-91-6836 
"OR52K1 WILD-TYPE" 
      TCGA-05-4249       TCGA-05-4250       TCGA-05-4382       TCGA-05-4384 
"OR52K1 WILD-TYPE" "OR52K1 WILD-TYPE"   "OR52K1 MUTATED" "OR52K1 WILD-TYPE" 
      TCGA-05-4390       TCGA-05-4396       TCGA-05-4397       TCGA-05-4398 
"OR52K1 WILD-TYPE"   "OR52K1 MUTATED" "OR52K1 WILD-TYPE"   "OR52K1 MUTATED" 
      TCGA-05-4402       TCGA-05-4405       TCGA-05-4415       TCGA-05-4417 
"OR52K1 WILD-TYPE" "OR52K1 WILD-TYPE" "OR52K1 WILD-TYPE" "OR52K1 WILD-TYPE" 
      TCGA-05-4418       TCGA-05-4420       TCGA-05-4424       TCGA-05-4426 
"OR52K1 WILD-TYPE" "OR52K1 WILD-TYPE" "OR52K1 WILD-TYPE" "OR52K1 WILD-TYPE" 
      TCGA-05-4427       TCGA-05-4430       TCGA-05-4432       TCGA-05-4433 
"OR52K1 WILD-TYPE"   "OR52K1 MUTATED" "OR52K1 WILD-TYPE" "OR52K1 WILD-TYPE" 
      TCGA-05-4434       TCGA-05-5420       TCGA-05-5423       TCGA-05-5425 
"OR52K1 WILD-TYPE" "OR52K1 WILD-TYPE" "OR52K1 WILD-TYPE" "OR52K1 WILD-TYPE" 
      TCGA-05-5429       TCGA-05-5715       TCGA-35-3615       TCGA-35-4122 
"OR52K1 WILD-TYPE" "OR52K1 WILD-TYPE" "OR52K1 WILD-TYPE" "OR52K1 WILD-TYPE" 
      TCGA-35-4123       TCGA-35-5375       TCGA-38-4625       TCGA-38-4626 
"OR52K1 WILD-TYPE" "OR52K1 WILD-TYPE" "OR52K1 WILD-TYPE" "OR52K1 WILD-TYPE" 
      TCGA-38-4627       TCGA-38-4628       TCGA-38-4629       TCGA-38-4630 
"OR52K1 WILD-TYPE" "OR52K1 WILD-TYPE" "OR52K1 WILD-TYPE" "OR52K1 WILD-TYPE" 
      TCGA-38-4631       TCGA-38-4632       TCGA-38-6178       TCGA-44-2655 
"OR52K1 WILD-TYPE" "OR52K1 WILD-TYPE" "OR52K1 WILD-TYPE" "OR52K1 WILD-TYPE" 
      TCGA-44-2656       TCGA-44-2657       TCGA-44-2659       TCGA-44-2661 
  "OR52K1 MUTATED" "OR52K1 WILD-TYPE" "OR52K1 WILD-TYPE" "OR52K1 WILD-TYPE" 
      TCGA-44-2662       TCGA-44-2665       TCGA-44-2666       TCGA-44-2668 
"OR52K1 WILD-TYPE" "OR52K1 WILD-TYPE" "OR52K1 WILD-TYPE" "OR52K1 WILD-TYPE" 
      TCGA-44-3396       TCGA-44-3398       TCGA-44-3918       TCGA-44-3919 
"OR52K1 WILD-TYPE" "OR52K1 WILD-TYPE" "OR52K1 WILD-TYPE" "OR52K1 WILD-TYPE" 
      TCGA-44-4112       TCGA-44-5643       TCGA-44-5645       TCGA-44-6144 
"OR52K1 WILD-TYPE" "OR52K1 WILD-TYPE" "OR52K1 WILD-TYPE" "OR52K1 WILD-TYPE" 
      TCGA-44-6145       TCGA-44-6146       TCGA-44-6147       TCGA-44-6148 
"OR52K1 WILD-TYPE" "OR52K1 WILD-TYPE" "OR52K1 WILD-TYPE" "OR52K1 WILD-TYPE" 
      TCGA-44-6774       TCGA-44-6775       TCGA-44-6776       TCGA-44-6777 
"OR52K1 WILD-TYPE" "OR52K1 WILD-TYPE" "OR52K1 WILD-TYPE" "OR52K1 WILD-TYPE" 
      TCGA-44-6778       TCGA-44-6779       TCGA-49-4486       TCGA-49-4487 
"OR52K1 WILD-TYPE" "OR52K1 WILD-TYPE" "OR52K1 WILD-TYPE" "OR52K1 WILD-TYPE" 
      TCGA-49-4488       TCGA-49-4490       TCGA-49-4494       TCGA-49-4501 
"OR52K1 WILD-TYPE" "OR52K1 WILD-TYPE" "OR52K1 WILD-TYPE" "OR52K1 WILD-TYPE" 
      TCGA-49-4505       TCGA-49-4506       TCGA-49-4507       TCGA-49-4510 
"OR52K1 WILD-TYPE" "OR52K1 WILD-TYPE" "OR52K1 WILD-TYPE" "OR52K1 WILD-TYPE" 
      TCGA-49-4512       TCGA-49-4514       TCGA-49-6742       TCGA-49-6743 
"OR52K1 WILD-TYPE" "OR52K1 WILD-TYPE" "OR52K1 WILD-TYPE" "OR52K1 WILD-TYPE" 
      TCGA-49-6744       TCGA-49-6745       TCGA-50-5044       TCGA-50-5045 
"OR52K1 WILD-TYPE" "OR52K1 WILD-TYPE" "OR52K1 WILD-TYPE" "OR52K1 WILD-TYPE" 
      TCGA-50-5049       TCGA-50-5051       TCGA-50-5055       TCGA-50-5066 
"OR52K1 WILD-TYPE" "OR52K1 WILD-TYPE" "OR52K1 WILD-TYPE" "OR52K1 WILD-TYPE" 
      TCGA-50-5068       TCGA-50-5072       TCGA-50-5930       TCGA-50-5931 
"OR52K1 WILD-TYPE" "OR52K1 WILD-TYPE" "OR52K1 WILD-TYPE" "OR52K1 WILD-TYPE" 
      TCGA-50-5932       TCGA-50-5933       TCGA-50-5935       TCGA-50-5936 
"OR52K1 WILD-TYPE" "OR52K1 WILD-TYPE" "OR52K1 WILD-TYPE" "OR52K1 WILD-TYPE" 
      TCGA-50-5939       TCGA-50-5941       TCGA-50-5942       TCGA-50-5944 
"OR52K1 WILD-TYPE" "OR52K1 WILD-TYPE" "OR52K1 WILD-TYPE" "OR52K1 WILD-TYPE" 
      TCGA-50-5946       TCGA-50-6590       TCGA-50-6591       TCGA-50-6592 
"OR52K1 WILD-TYPE" "OR52K1 WILD-TYPE" "OR52K1 WILD-TYPE" "OR52K1 WILD-TYPE" 
      TCGA-50-6593       TCGA-50-6594       TCGA-50-6595       TCGA-50-6597 
"OR52K1 WILD-TYPE" "OR52K1 WILD-TYPE" "OR52K1 WILD-TYPE" "OR52K1 WILD-TYPE" 
      TCGA-55-1592       TCGA-55-1594       TCGA-55-1595       TCGA-55-1596 
"OR52K1 WILD-TYPE" "OR52K1 WILD-TYPE" "OR52K1 WILD-TYPE" "OR52K1 WILD-TYPE" 
      TCGA-55-5899       TCGA-55-6543       TCGA-55-6642       TCGA-55-6712 
"OR52K1 WILD-TYPE" "OR52K1 WILD-TYPE" "OR52K1 WILD-TYPE" "OR52K1 WILD-TYPE" 
      TCGA-64-1676       TCGA-64-1677       TCGA-64-1678       TCGA-64-1680 
"OR52K1 WILD-TYPE" "OR52K1 WILD-TYPE" "OR52K1 WILD-TYPE" "OR52K1 WILD-TYPE" 
      TCGA-64-5774       TCGA-64-5775       TCGA-64-5778       TCGA-64-5779 
"OR52K1 WILD-TYPE" "OR52K1 WILD-TYPE" "OR52K1 WILD-TYPE" "OR52K1 WILD-TYPE" 
      TCGA-64-5781       TCGA-64-5815       TCGA-67-3770       TCGA-67-3771 
"OR52K1 WILD-TYPE" "OR52K1 WILD-TYPE" "OR52K1 WILD-TYPE" "OR52K1 WILD-TYPE" 
      TCGA-67-3772       TCGA-67-3773       TCGA-67-3774       TCGA-67-6215 
"OR52K1 WILD-TYPE" "OR52K1 WILD-TYPE" "OR52K1 WILD-TYPE" "OR52K1 WILD-TYPE" 
      TCGA-67-6216       TCGA-67-6217       TCGA-71-6725       TCGA-73-4658 
"OR52K1 WILD-TYPE" "OR52K1 WILD-TYPE" "OR52K1 WILD-TYPE" "OR52K1 WILD-TYPE" 
      TCGA-73-4659       TCGA-73-4662       TCGA-73-4666       TCGA-73-4668 
"OR52K1 WILD-TYPE" "OR52K1 WILD-TYPE"   "OR52K1 MUTATED" "OR52K1 WILD-TYPE" 
      TCGA-73-4670       TCGA-73-4675       TCGA-73-4676       TCGA-73-4677 
"OR52K1 WILD-TYPE" "OR52K1 WILD-TYPE" "OR52K1 WILD-TYPE" "OR52K1 WILD-TYPE" 
      TCGA-91-6828       TCGA-91-6829       TCGA-91-6831       TCGA-91-6835 
"OR52K1 WILD-TYPE" "OR52K1 WILD-TYPE" "OR52K1 WILD-TYPE" "OR52K1 WILD-TYPE" 
      TCGA-91-6836 
"OR52K1 WILD-TYPE" 
[1] "hr=" "2.2"
D290V2, continuous
D290V3, binary
[1] "tbl2"
                  cls
clus               [,1] [,2]
  OR52K1 MUTATED      3    3
  OR52K1 WILD-TYPE   90   76
        clus
vv       OR52K1 MUTATED OR52K1 WILD-TYPE
  FEMALE              3               90
  MALE                3               76
D290V4, continuous
[1] "Remove cluster labels:" "OR52K1 MUTATED"        
clus
  OR52K1 MUTATED OR52K1 WILD-TYPE 
               1               11 
      TCGA-35-4122       TCGA-35-4123       TCGA-35-5375       TCGA-64-1677 
"OR52K1 WILD-TYPE" "OR52K1 WILD-TYPE" "OR52K1 WILD-TYPE" "OR52K1 WILD-TYPE" 
      TCGA-64-5778       TCGA-71-6725       TCGA-73-4659       TCGA-73-4662 
"OR52K1 WILD-TYPE" "OR52K1 WILD-TYPE" "OR52K1 WILD-TYPE" "OR52K1 WILD-TYPE" 
      TCGA-73-4668       TCGA-73-4676       TCGA-75-5122 
"OR52K1 WILD-TYPE" "OR52K1 WILD-TYPE" "OR52K1 WILD-TYPE" 
D290V5, multiclass
D290V6, multiclass
    clus
vv   OR52K1 MUTATED OR52K1 WILD-TYPE
  T1              1               40
  T2              3              105
  T3              0               14
  T4              2                6
D290V7, multiclass
       clus
vv      OR52K1 MUTATED OR52K1 WILD-TYPE
  N0                 4               91
  N1                 1               36
  N2+N3              1               34
D290V8, multiclass
    clus
vv   OR52K1 MUTATED OR52K1 WILD-TYPE
  M0              5              132
  M1              1                8
  MX              0               22
D290V9, multiclass
     clus
vv    OR52K1 MUTATED OR52K1 WILD-TYPE
  I                3               85
  II               0               33
  III              2               37
  IV               1                8
D290V10, binary
[1] "tbl2"
                  cls
clus               [,1] [,2]
  OR52K1 MUTATED      1    5
  OR52K1 WILD-TYPE   15  151
     clus
vv    OR52K1 MUTATED OR52K1 WILD-TYPE
  NO               1               15
  YES              5              151
D290V11, continuous
D290V12, continuous
D290V13, multiclass
                                             clus
vv                                            OR52K1 MUTATED OR52K1 WILD-TYPE
  CURRENT REFORMED SMOKER FOR < OR = 15 YEARS              4               58
  CURRENT REFORMED SMOKER FOR > 15 YEARS                   1               45
  CURRENT SMOKER                                           1               27
  LIFELONG NON-SMOKER                                      0               24
D290V14, continuous

Clustering(291) Variable = SLCO6A1 MUTATION ANALYSIS
D291V1, survival
                   sevent
clus2                0  1
  SLCO6A1 MUTATED    3  3
  SLCO6A1 WILD-TYPE 96 47
  SLCO6A1 MUTATED SLCO6A1 WILD-TYPE 
                6               143 
  SLCO6A1 MUTATED SLCO6A1 WILD-TYPE 
                3                47 
$`SLCO6A1 MUTATED`
TCGA-05-4390 TCGA-05-4396 TCGA-05-4402 TCGA-05-4418 TCGA-05-4420 TCGA-49-4514 
       37.02         9.96         8.02         8.98        29.95        43.20 

$`SLCO6A1 WILD-TYPE`
TCGA-05-4249 TCGA-05-4250 TCGA-05-4382 TCGA-05-4384 TCGA-05-4397 TCGA-05-4398 
       38.07         3.98        19.92        14.01        24.03        47.05 
TCGA-05-4405 TCGA-05-4415 TCGA-05-4417 TCGA-05-4424 TCGA-05-4426 TCGA-05-4427 
       20.05         2.96        14.93        30.02        26.01        26.01 
TCGA-05-4430 TCGA-05-4432 TCGA-05-4433 TCGA-05-4434 TCGA-05-5420 TCGA-05-5423 
       25.02        25.02        24.00        15.02         1.02         4.96 
TCGA-05-5425 TCGA-05-5429 TCGA-05-5715 TCGA-35-3615 TCGA-35-4122 TCGA-35-4123 
        2.96         0.99         2.04         0.46         7.36         5.95 
TCGA-35-5375 TCGA-38-4625 TCGA-38-4626 TCGA-38-4627 TCGA-38-4628 TCGA-38-4629 
        8.68        47.61        85.32        37.71        49.02        28.37 
TCGA-38-4630 TCGA-38-4631 TCGA-38-4632 TCGA-38-6178 TCGA-44-2655 TCGA-44-2656 
       35.28        11.64        44.61         5.19        18.87        19.10 
TCGA-44-2657 TCGA-44-2659 TCGA-44-2661 TCGA-44-2662 TCGA-44-2665 TCGA-44-2666 
       13.15        17.39         3.39        15.78        13.15         3.19 
TCGA-44-2668 TCGA-44-3396 TCGA-44-3398 TCGA-44-3918 TCGA-44-3919 TCGA-44-4112 
        8.09        10.22         8.32         6.44         6.21         4.60 
TCGA-44-5643 TCGA-44-5645 TCGA-44-6144 TCGA-44-6145 TCGA-44-6146 TCGA-44-6147 
        3.48         6.84         0.30         3.35         9.93         7.76 
TCGA-44-6148 TCGA-44-6774 TCGA-44-6775 TCGA-44-6776 TCGA-44-6777 TCGA-44-6778 
        3.12         5.42         2.70        63.72        32.45        36.49 
TCGA-44-6779 TCGA-49-4486 TCGA-49-4487 TCGA-49-4488 TCGA-49-4490 TCGA-49-4494 
       16.41        76.21        28.11        28.57        12.66        35.54 
TCGA-49-4501 TCGA-49-4505 TCGA-49-4506 TCGA-49-4507 TCGA-49-4510 TCGA-49-4512 
       46.72        14.07        32.84         8.81        29.46        29.75 
TCGA-49-6742 TCGA-49-6743 TCGA-49-6744 TCGA-49-6745 TCGA-50-5044 TCGA-50-5045 
       15.02        12.13        12.99         4.93        20.48        71.47 
TCGA-50-5049 TCGA-50-5051 TCGA-50-5055 TCGA-50-5066 TCGA-50-5068 TCGA-50-5072 
       48.82        14.96        25.81         9.76        49.28         8.05 
TCGA-50-5930 TCGA-50-5931 TCGA-50-5932 TCGA-50-5933 TCGA-50-5935 TCGA-50-5936 
        9.27         8.78        35.87        77.88        21.47         8.45 
TCGA-50-5939 TCGA-50-5941 TCGA-50-5942 TCGA-50-5944 TCGA-50-5946 TCGA-50-6590 
       15.12         9.37         4.44        12.26        11.47        42.31 
TCGA-50-6591 TCGA-50-6592 TCGA-50-6593 TCGA-50-6594 TCGA-50-6595 TCGA-50-6597 
        3.88        25.51        11.05        12.16         6.21        33.37 
TCGA-55-1592 TCGA-55-1594 TCGA-55-1595 TCGA-55-1596 TCGA-55-5899 TCGA-55-6543 
       23.05        38.73        48.62        45.17         2.86         0.07 
TCGA-55-6642 TCGA-55-6712 TCGA-64-1676 TCGA-64-1677 TCGA-64-1678 TCGA-64-1680 
       32.61         0.79        56.81        20.65        39.09        37.02 
TCGA-64-5774 TCGA-64-5775 TCGA-64-5778 TCGA-64-5779 TCGA-64-5781 TCGA-64-5815 
       83.84         0.10        30.44        16.67        39.52         7.33 
TCGA-67-3770 TCGA-67-3771 TCGA-67-3772 TCGA-67-3773 TCGA-67-3774 TCGA-67-6215 
        0.99         1.97         0.59         2.04         0.59         0.89 
TCGA-67-6216 TCGA-67-6217 TCGA-71-6725 TCGA-73-4658 TCGA-73-4659 TCGA-73-4662 
        0.69        13.87         2.01        52.57        23.38        29.95 
TCGA-73-4666 TCGA-73-4668 TCGA-73-4670 TCGA-73-4675 TCGA-73-4676 TCGA-73-4677 
       20.28        15.35         0.46         1.32         4.01         1.25 
TCGA-91-6828 TCGA-91-6829 TCGA-91-6831 TCGA-91-6835 TCGA-91-6836 
        1.22        41.33         1.28         1.15         0.36 

  SLCO6A1 MUTATED SLCO6A1 WILD-TYPE 
             8.02              0.07 
  SLCO6A1 MUTATED SLCO6A1 WILD-TYPE 
            43.20             85.32 
  SLCO6A1 MUTATED SLCO6A1 WILD-TYPE 
           19.955            13.870 
[1] "8.0 - 43.2 (20.0)" "0.1 - 85.3 (13.9)"
       TCGA-05-4249        TCGA-05-4250        TCGA-05-4382        TCGA-05-4384 
"SLCO6A1 WILD-TYPE" "SLCO6A1 WILD-TYPE" "SLCO6A1 WILD-TYPE" "SLCO6A1 WILD-TYPE" 
       TCGA-05-4390        TCGA-05-4396        TCGA-05-4397        TCGA-05-4398 
  "SLCO6A1 MUTATED"   "SLCO6A1 MUTATED" "SLCO6A1 WILD-TYPE" "SLCO6A1 WILD-TYPE" 
       TCGA-05-4402        TCGA-05-4405        TCGA-05-4415        TCGA-05-4417 
  "SLCO6A1 MUTATED" "SLCO6A1 WILD-TYPE" "SLCO6A1 WILD-TYPE" "SLCO6A1 WILD-TYPE" 
       TCGA-05-4418        TCGA-05-4420        TCGA-05-4424        TCGA-05-4426 
  "SLCO6A1 MUTATED"   "SLCO6A1 MUTATED" "SLCO6A1 WILD-TYPE" "SLCO6A1 WILD-TYPE" 
       TCGA-05-4427        TCGA-05-4430        TCGA-05-4432        TCGA-05-4433 
"SLCO6A1 WILD-TYPE" "SLCO6A1 WILD-TYPE" "SLCO6A1 WILD-TYPE" "SLCO6A1 WILD-TYPE" 
       TCGA-05-4434        TCGA-05-5420        TCGA-05-5423        TCGA-05-5425 
"SLCO6A1 WILD-TYPE" "SLCO6A1 WILD-TYPE" "SLCO6A1 WILD-TYPE" "SLCO6A1 WILD-TYPE" 
       TCGA-05-5429        TCGA-05-5715        TCGA-35-3615        TCGA-35-4122 
"SLCO6A1 WILD-TYPE" "SLCO6A1 WILD-TYPE" "SLCO6A1 WILD-TYPE" "SLCO6A1 WILD-TYPE" 
       TCGA-35-4123        TCGA-35-5375        TCGA-38-4625        TCGA-38-4626 
"SLCO6A1 WILD-TYPE" "SLCO6A1 WILD-TYPE" "SLCO6A1 WILD-TYPE" "SLCO6A1 WILD-TYPE" 
       TCGA-38-4627        TCGA-38-4628        TCGA-38-4629        TCGA-38-4630 
"SLCO6A1 WILD-TYPE" "SLCO6A1 WILD-TYPE" "SLCO6A1 WILD-TYPE" "SLCO6A1 WILD-TYPE" 
       TCGA-38-4631        TCGA-38-4632        TCGA-38-6178        TCGA-44-2655 
"SLCO6A1 WILD-TYPE" "SLCO6A1 WILD-TYPE" "SLCO6A1 WILD-TYPE" "SLCO6A1 WILD-TYPE" 
       TCGA-44-2656        TCGA-44-2657        TCGA-44-2659        TCGA-44-2661 
"SLCO6A1 WILD-TYPE" "SLCO6A1 WILD-TYPE" "SLCO6A1 WILD-TYPE" "SLCO6A1 WILD-TYPE" 
       TCGA-44-2662        TCGA-44-2665        TCGA-44-2666        TCGA-44-2668 
"SLCO6A1 WILD-TYPE" "SLCO6A1 WILD-TYPE" "SLCO6A1 WILD-TYPE" "SLCO6A1 WILD-TYPE" 
       TCGA-44-3396        TCGA-44-3398        TCGA-44-3918        TCGA-44-3919 
"SLCO6A1 WILD-TYPE" "SLCO6A1 WILD-TYPE" "SLCO6A1 WILD-TYPE" "SLCO6A1 WILD-TYPE" 
       TCGA-44-4112        TCGA-44-5643        TCGA-44-5645        TCGA-44-6144 
"SLCO6A1 WILD-TYPE" "SLCO6A1 WILD-TYPE" "SLCO6A1 WILD-TYPE" "SLCO6A1 WILD-TYPE" 
       TCGA-44-6145        TCGA-44-6146        TCGA-44-6147        TCGA-44-6148 
"SLCO6A1 WILD-TYPE" "SLCO6A1 WILD-TYPE" "SLCO6A1 WILD-TYPE" "SLCO6A1 WILD-TYPE" 
       TCGA-44-6774        TCGA-44-6775        TCGA-44-6776        TCGA-44-6777 
"SLCO6A1 WILD-TYPE" "SLCO6A1 WILD-TYPE" "SLCO6A1 WILD-TYPE" "SLCO6A1 WILD-TYPE" 
       TCGA-44-6778        TCGA-44-6779        TCGA-49-4486        TCGA-49-4487 
"SLCO6A1 WILD-TYPE" "SLCO6A1 WILD-TYPE" "SLCO6A1 WILD-TYPE" "SLCO6A1 WILD-TYPE" 
       TCGA-49-4488        TCGA-49-4490        TCGA-49-4494        TCGA-49-4501 
"SLCO6A1 WILD-TYPE" "SLCO6A1 WILD-TYPE" "SLCO6A1 WILD-TYPE" "SLCO6A1 WILD-TYPE" 
       TCGA-49-4505        TCGA-49-4506        TCGA-49-4507        TCGA-49-4510 
"SLCO6A1 WILD-TYPE" "SLCO6A1 WILD-TYPE" "SLCO6A1 WILD-TYPE" "SLCO6A1 WILD-TYPE" 
       TCGA-49-4512        TCGA-49-4514        TCGA-49-6742        TCGA-49-6743 
"SLCO6A1 WILD-TYPE"   "SLCO6A1 MUTATED" "SLCO6A1 WILD-TYPE" "SLCO6A1 WILD-TYPE" 
       TCGA-49-6744        TCGA-49-6745        TCGA-50-5044        TCGA-50-5045 
"SLCO6A1 WILD-TYPE" "SLCO6A1 WILD-TYPE" "SLCO6A1 WILD-TYPE" "SLCO6A1 WILD-TYPE" 
       TCGA-50-5049        TCGA-50-5051        TCGA-50-5055        TCGA-50-5066 
"SLCO6A1 WILD-TYPE" "SLCO6A1 WILD-TYPE" "SLCO6A1 WILD-TYPE" "SLCO6A1 WILD-TYPE" 
       TCGA-50-5068        TCGA-50-5072        TCGA-50-5930        TCGA-50-5931 
"SLCO6A1 WILD-TYPE" "SLCO6A1 WILD-TYPE" "SLCO6A1 WILD-TYPE" "SLCO6A1 WILD-TYPE" 
       TCGA-50-5932        TCGA-50-5933        TCGA-50-5935        TCGA-50-5936 
"SLCO6A1 WILD-TYPE" "SLCO6A1 WILD-TYPE" "SLCO6A1 WILD-TYPE" "SLCO6A1 WILD-TYPE" 
       TCGA-50-5939        TCGA-50-5941        TCGA-50-5942        TCGA-50-5944 
"SLCO6A1 WILD-TYPE" "SLCO6A1 WILD-TYPE" "SLCO6A1 WILD-TYPE" "SLCO6A1 WILD-TYPE" 
       TCGA-50-5946        TCGA-50-6590        TCGA-50-6591        TCGA-50-6592 
"SLCO6A1 WILD-TYPE" "SLCO6A1 WILD-TYPE" "SLCO6A1 WILD-TYPE" "SLCO6A1 WILD-TYPE" 
       TCGA-50-6593        TCGA-50-6594        TCGA-50-6595        TCGA-50-6597 
"SLCO6A1 WILD-TYPE" "SLCO6A1 WILD-TYPE" "SLCO6A1 WILD-TYPE" "SLCO6A1 WILD-TYPE" 
       TCGA-55-1592        TCGA-55-1594        TCGA-55-1595        TCGA-55-1596 
"SLCO6A1 WILD-TYPE" "SLCO6A1 WILD-TYPE" "SLCO6A1 WILD-TYPE" "SLCO6A1 WILD-TYPE" 
       TCGA-55-5899        TCGA-55-6543        TCGA-55-6642        TCGA-55-6712 
"SLCO6A1 WILD-TYPE" "SLCO6A1 WILD-TYPE" "SLCO6A1 WILD-TYPE" "SLCO6A1 WILD-TYPE" 
       TCGA-64-1676        TCGA-64-1677        TCGA-64-1678        TCGA-64-1680 
"SLCO6A1 WILD-TYPE" "SLCO6A1 WILD-TYPE" "SLCO6A1 WILD-TYPE" "SLCO6A1 WILD-TYPE" 
       TCGA-64-5774        TCGA-64-5775        TCGA-64-5778        TCGA-64-5779 
"SLCO6A1 WILD-TYPE" "SLCO6A1 WILD-TYPE" "SLCO6A1 WILD-TYPE" "SLCO6A1 WILD-TYPE" 
       TCGA-64-5781        TCGA-64-5815        TCGA-67-3770        TCGA-67-3771 
"SLCO6A1 WILD-TYPE" "SLCO6A1 WILD-TYPE" "SLCO6A1 WILD-TYPE" "SLCO6A1 WILD-TYPE" 
       TCGA-67-3772        TCGA-67-3773        TCGA-67-3774        TCGA-67-6215 
"SLCO6A1 WILD-TYPE" "SLCO6A1 WILD-TYPE" "SLCO6A1 WILD-TYPE" "SLCO6A1 WILD-TYPE" 
       TCGA-67-6216        TCGA-67-6217        TCGA-71-6725        TCGA-73-4658 
"SLCO6A1 WILD-TYPE" "SLCO6A1 WILD-TYPE" "SLCO6A1 WILD-TYPE" "SLCO6A1 WILD-TYPE" 
       TCGA-73-4659        TCGA-73-4662        TCGA-73-4666        TCGA-73-4668 
"SLCO6A1 WILD-TYPE" "SLCO6A1 WILD-TYPE" "SLCO6A1 WILD-TYPE" "SLCO6A1 WILD-TYPE" 
       TCGA-73-4670        TCGA-73-4675        TCGA-73-4676        TCGA-73-4677 
"SLCO6A1 WILD-TYPE" "SLCO6A1 WILD-TYPE" "SLCO6A1 WILD-TYPE" "SLCO6A1 WILD-TYPE" 
       TCGA-91-6828        TCGA-91-6829        TCGA-91-6831        TCGA-91-6835 
"SLCO6A1 WILD-TYPE" "SLCO6A1 WILD-TYPE" "SLCO6A1 WILD-TYPE" "SLCO6A1 WILD-TYPE" 
       TCGA-91-6836 
"SLCO6A1 WILD-TYPE" 
       TCGA-05-4249        TCGA-05-4250        TCGA-05-4382        TCGA-05-4384 
"SLCO6A1 WILD-TYPE" "SLCO6A1 WILD-TYPE" "SLCO6A1 WILD-TYPE" "SLCO6A1 WILD-TYPE" 
       TCGA-05-4390        TCGA-05-4396        TCGA-05-4397        TCGA-05-4398 
  "SLCO6A1 MUTATED"   "SLCO6A1 MUTATED" "SLCO6A1 WILD-TYPE" "SLCO6A1 WILD-TYPE" 
       TCGA-05-4402        TCGA-05-4405        TCGA-05-4415        TCGA-05-4417 
  "SLCO6A1 MUTATED" "SLCO6A1 WILD-TYPE" "SLCO6A1 WILD-TYPE" "SLCO6A1 WILD-TYPE" 
       TCGA-05-4418        TCGA-05-4420        TCGA-05-4424        TCGA-05-4426 
  "SLCO6A1 MUTATED"   "SLCO6A1 MUTATED" "SLCO6A1 WILD-TYPE" "SLCO6A1 WILD-TYPE" 
       TCGA-05-4427        TCGA-05-4430        TCGA-05-4432        TCGA-05-4433 
"SLCO6A1 WILD-TYPE" "SLCO6A1 WILD-TYPE" "SLCO6A1 WILD-TYPE" "SLCO6A1 WILD-TYPE" 
       TCGA-05-4434        TCGA-05-5420        TCGA-05-5423        TCGA-05-5425 
"SLCO6A1 WILD-TYPE" "SLCO6A1 WILD-TYPE" "SLCO6A1 WILD-TYPE" "SLCO6A1 WILD-TYPE" 
       TCGA-05-5429        TCGA-05-5715        TCGA-35-3615        TCGA-35-4122 
"SLCO6A1 WILD-TYPE" "SLCO6A1 WILD-TYPE" "SLCO6A1 WILD-TYPE" "SLCO6A1 WILD-TYPE" 
       TCGA-35-4123        TCGA-35-5375        TCGA-38-4625        TCGA-38-4626 
"SLCO6A1 WILD-TYPE" "SLCO6A1 WILD-TYPE" "SLCO6A1 WILD-TYPE" "SLCO6A1 WILD-TYPE" 
       TCGA-38-4627        TCGA-38-4628        TCGA-38-4629        TCGA-38-4630 
"SLCO6A1 WILD-TYPE" "SLCO6A1 WILD-TYPE" "SLCO6A1 WILD-TYPE" "SLCO6A1 WILD-TYPE" 
       TCGA-38-4631        TCGA-38-4632        TCGA-38-6178        TCGA-44-2655 
"SLCO6A1 WILD-TYPE" "SLCO6A1 WILD-TYPE" "SLCO6A1 WILD-TYPE" "SLCO6A1 WILD-TYPE" 
       TCGA-44-2656        TCGA-44-2657        TCGA-44-2659        TCGA-44-2661 
"SLCO6A1 WILD-TYPE" "SLCO6A1 WILD-TYPE" "SLCO6A1 WILD-TYPE" "SLCO6A1 WILD-TYPE" 
       TCGA-44-2662        TCGA-44-2665        TCGA-44-2666        TCGA-44-2668 
"SLCO6A1 WILD-TYPE" "SLCO6A1 WILD-TYPE" "SLCO6A1 WILD-TYPE" "SLCO6A1 WILD-TYPE" 
       TCGA-44-3396        TCGA-44-3398        TCGA-44-3918        TCGA-44-3919 
"SLCO6A1 WILD-TYPE" "SLCO6A1 WILD-TYPE" "SLCO6A1 WILD-TYPE" "SLCO6A1 WILD-TYPE" 
       TCGA-44-4112        TCGA-44-5643        TCGA-44-5645        TCGA-44-6144 
"SLCO6A1 WILD-TYPE" "SLCO6A1 WILD-TYPE" "SLCO6A1 WILD-TYPE" "SLCO6A1 WILD-TYPE" 
       TCGA-44-6145        TCGA-44-6146        TCGA-44-6147        TCGA-44-6148 
"SLCO6A1 WILD-TYPE" "SLCO6A1 WILD-TYPE" "SLCO6A1 WILD-TYPE" "SLCO6A1 WILD-TYPE" 
       TCGA-44-6774        TCGA-44-6775        TCGA-44-6776        TCGA-44-6777 
"SLCO6A1 WILD-TYPE" "SLCO6A1 WILD-TYPE" "SLCO6A1 WILD-TYPE" "SLCO6A1 WILD-TYPE" 
       TCGA-44-6778        TCGA-44-6779        TCGA-49-4486        TCGA-49-4487 
"SLCO6A1 WILD-TYPE" "SLCO6A1 WILD-TYPE" "SLCO6A1 WILD-TYPE" "SLCO6A1 WILD-TYPE" 
       TCGA-49-4488        TCGA-49-4490        TCGA-49-4494        TCGA-49-4501 
"SLCO6A1 WILD-TYPE" "SLCO6A1 WILD-TYPE" "SLCO6A1 WILD-TYPE" "SLCO6A1 WILD-TYPE" 
       TCGA-49-4505        TCGA-49-4506        TCGA-49-4507        TCGA-49-4510 
"SLCO6A1 WILD-TYPE" "SLCO6A1 WILD-TYPE" "SLCO6A1 WILD-TYPE" "SLCO6A1 WILD-TYPE" 
       TCGA-49-4512        TCGA-49-4514        TCGA-49-6742        TCGA-49-6743 
"SLCO6A1 WILD-TYPE"   "SLCO6A1 MUTATED" "SLCO6A1 WILD-TYPE" "SLCO6A1 WILD-TYPE" 
       TCGA-49-6744        TCGA-49-6745        TCGA-50-5044        TCGA-50-5045 
"SLCO6A1 WILD-TYPE" "SLCO6A1 WILD-TYPE" "SLCO6A1 WILD-TYPE" "SLCO6A1 WILD-TYPE" 
       TCGA-50-5049        TCGA-50-5051        TCGA-50-5055        TCGA-50-5066 
"SLCO6A1 WILD-TYPE" "SLCO6A1 WILD-TYPE" "SLCO6A1 WILD-TYPE" "SLCO6A1 WILD-TYPE" 
       TCGA-50-5068        TCGA-50-5072        TCGA-50-5930        TCGA-50-5931 
"SLCO6A1 WILD-TYPE" "SLCO6A1 WILD-TYPE" "SLCO6A1 WILD-TYPE" "SLCO6A1 WILD-TYPE" 
       TCGA-50-5932        TCGA-50-5933        TCGA-50-5935        TCGA-50-5936 
"SLCO6A1 WILD-TYPE" "SLCO6A1 WILD-TYPE" "SLCO6A1 WILD-TYPE" "SLCO6A1 WILD-TYPE" 
       TCGA-50-5939        TCGA-50-5941        TCGA-50-5942        TCGA-50-5944 
"SLCO6A1 WILD-TYPE" "SLCO6A1 WILD-TYPE" "SLCO6A1 WILD-TYPE" "SLCO6A1 WILD-TYPE" 
       TCGA-50-5946        TCGA-50-6590        TCGA-50-6591        TCGA-50-6592 
"SLCO6A1 WILD-TYPE" "SLCO6A1 WILD-TYPE" "SLCO6A1 WILD-TYPE" "SLCO6A1 WILD-TYPE" 
       TCGA-50-6593        TCGA-50-6594        TCGA-50-6595        TCGA-50-6597 
"SLCO6A1 WILD-TYPE" "SLCO6A1 WILD-TYPE" "SLCO6A1 WILD-TYPE" "SLCO6A1 WILD-TYPE" 
       TCGA-55-1592        TCGA-55-1594        TCGA-55-1595        TCGA-55-1596 
"SLCO6A1 WILD-TYPE" "SLCO6A1 WILD-TYPE" "SLCO6A1 WILD-TYPE" "SLCO6A1 WILD-TYPE" 
       TCGA-55-5899        TCGA-55-6543        TCGA-55-6642        TCGA-55-6712 
"SLCO6A1 WILD-TYPE" "SLCO6A1 WILD-TYPE" "SLCO6A1 WILD-TYPE" "SLCO6A1 WILD-TYPE" 
       TCGA-64-1676        TCGA-64-1677        TCGA-64-1678        TCGA-64-1680 
"SLCO6A1 WILD-TYPE" "SLCO6A1 WILD-TYPE" "SLCO6A1 WILD-TYPE" "SLCO6A1 WILD-TYPE" 
       TCGA-64-5774        TCGA-64-5775        TCGA-64-5778        TCGA-64-5779 
"SLCO6A1 WILD-TYPE" "SLCO6A1 WILD-TYPE" "SLCO6A1 WILD-TYPE" "SLCO6A1 WILD-TYPE" 
       TCGA-64-5781        TCGA-64-5815        TCGA-67-3770        TCGA-67-3771 
"SLCO6A1 WILD-TYPE" "SLCO6A1 WILD-TYPE" "SLCO6A1 WILD-TYPE" "SLCO6A1 WILD-TYPE" 
       TCGA-67-3772        TCGA-67-3773        TCGA-67-3774        TCGA-67-6215 
"SLCO6A1 WILD-TYPE" "SLCO6A1 WILD-TYPE" "SLCO6A1 WILD-TYPE" "SLCO6A1 WILD-TYPE" 
       TCGA-67-6216        TCGA-67-6217        TCGA-71-6725        TCGA-73-4658 
"SLCO6A1 WILD-TYPE" "SLCO6A1 WILD-TYPE" "SLCO6A1 WILD-TYPE" "SLCO6A1 WILD-TYPE" 
       TCGA-73-4659        TCGA-73-4662        TCGA-73-4666        TCGA-73-4668 
"SLCO6A1 WILD-TYPE" "SLCO6A1 WILD-TYPE" "SLCO6A1 WILD-TYPE" "SLCO6A1 WILD-TYPE" 
       TCGA-73-4670        TCGA-73-4675        TCGA-73-4676        TCGA-73-4677 
"SLCO6A1 WILD-TYPE" "SLCO6A1 WILD-TYPE" "SLCO6A1 WILD-TYPE" "SLCO6A1 WILD-TYPE" 
       TCGA-91-6828        TCGA-91-6829        TCGA-91-6831        TCGA-91-6835 
"SLCO6A1 WILD-TYPE" "SLCO6A1 WILD-TYPE" "SLCO6A1 WILD-TYPE" "SLCO6A1 WILD-TYPE" 
       TCGA-91-6836 
"SLCO6A1 WILD-TYPE" 
       TCGA-05-4249        TCGA-05-4250        TCGA-05-4382        TCGA-05-4384 
"SLCO6A1 WILD-TYPE" "SLCO6A1 WILD-TYPE" "SLCO6A1 WILD-TYPE" "SLCO6A1 WILD-TYPE" 
       TCGA-05-4390        TCGA-05-4396        TCGA-05-4397        TCGA-05-4398 
  "SLCO6A1 MUTATED"   "SLCO6A1 MUTATED" "SLCO6A1 WILD-TYPE" "SLCO6A1 WILD-TYPE" 
       TCGA-05-4402        TCGA-05-4405        TCGA-05-4415        TCGA-05-4417 
  "SLCO6A1 MUTATED" "SLCO6A1 WILD-TYPE" "SLCO6A1 WILD-TYPE" "SLCO6A1 WILD-TYPE" 
       TCGA-05-4418        TCGA-05-4420        TCGA-05-4424        TCGA-05-4426 
  "SLCO6A1 MUTATED"   "SLCO6A1 MUTATED" "SLCO6A1 WILD-TYPE" "SLCO6A1 WILD-TYPE" 
       TCGA-05-4427        TCGA-05-4430        TCGA-05-4432        TCGA-05-4433 
"SLCO6A1 WILD-TYPE" "SLCO6A1 WILD-TYPE" "SLCO6A1 WILD-TYPE" "SLCO6A1 WILD-TYPE" 
       TCGA-05-4434        TCGA-05-5420        TCGA-05-5423        TCGA-05-5425 
"SLCO6A1 WILD-TYPE" "SLCO6A1 WILD-TYPE" "SLCO6A1 WILD-TYPE" "SLCO6A1 WILD-TYPE" 
       TCGA-05-5429        TCGA-05-5715        TCGA-35-3615        TCGA-35-4122 
"SLCO6A1 WILD-TYPE" "SLCO6A1 WILD-TYPE" "SLCO6A1 WILD-TYPE" "SLCO6A1 WILD-TYPE" 
       TCGA-35-4123        TCGA-35-5375        TCGA-38-4625        TCGA-38-4626 
"SLCO6A1 WILD-TYPE" "SLCO6A1 WILD-TYPE" "SLCO6A1 WILD-TYPE" "SLCO6A1 WILD-TYPE" 
       TCGA-38-4627        TCGA-38-4628        TCGA-38-4629        TCGA-38-4630 
"SLCO6A1 WILD-TYPE" "SLCO6A1 WILD-TYPE" "SLCO6A1 WILD-TYPE" "SLCO6A1 WILD-TYPE" 
       TCGA-38-4631        TCGA-38-4632        TCGA-38-6178        TCGA-44-2655 
"SLCO6A1 WILD-TYPE" "SLCO6A1 WILD-TYPE" "SLCO6A1 WILD-TYPE" "SLCO6A1 WILD-TYPE" 
       TCGA-44-2656        TCGA-44-2657        TCGA-44-2659        TCGA-44-2661 
"SLCO6A1 WILD-TYPE" "SLCO6A1 WILD-TYPE" "SLCO6A1 WILD-TYPE" "SLCO6A1 WILD-TYPE" 
       TCGA-44-2662        TCGA-44-2665        TCGA-44-2666        TCGA-44-2668 
"SLCO6A1 WILD-TYPE" "SLCO6A1 WILD-TYPE" "SLCO6A1 WILD-TYPE" "SLCO6A1 WILD-TYPE" 
       TCGA-44-3396        TCGA-44-3398        TCGA-44-3918        TCGA-44-3919 
"SLCO6A1 WILD-TYPE" "SLCO6A1 WILD-TYPE" "SLCO6A1 WILD-TYPE" "SLCO6A1 WILD-TYPE" 
       TCGA-44-4112        TCGA-44-5643        TCGA-44-5645        TCGA-44-6144 
"SLCO6A1 WILD-TYPE" "SLCO6A1 WILD-TYPE" "SLCO6A1 WILD-TYPE" "SLCO6A1 WILD-TYPE" 
       TCGA-44-6145        TCGA-44-6146        TCGA-44-6147        TCGA-44-6148 
"SLCO6A1 WILD-TYPE" "SLCO6A1 WILD-TYPE" "SLCO6A1 WILD-TYPE" "SLCO6A1 WILD-TYPE" 
       TCGA-44-6774        TCGA-44-6775        TCGA-44-6776        TCGA-44-6777 
"SLCO6A1 WILD-TYPE" "SLCO6A1 WILD-TYPE" "SLCO6A1 WILD-TYPE" "SLCO6A1 WILD-TYPE" 
       TCGA-44-6778        TCGA-44-6779        TCGA-49-4486        TCGA-49-4487 
"SLCO6A1 WILD-TYPE" "SLCO6A1 WILD-TYPE" "SLCO6A1 WILD-TYPE" "SLCO6A1 WILD-TYPE" 
       TCGA-49-4488        TCGA-49-4490        TCGA-49-4494        TCGA-49-4501 
"SLCO6A1 WILD-TYPE" "SLCO6A1 WILD-TYPE" "SLCO6A1 WILD-TYPE" "SLCO6A1 WILD-TYPE" 
       TCGA-49-4505        TCGA-49-4506        TCGA-49-4507        TCGA-49-4510 
"SLCO6A1 WILD-TYPE" "SLCO6A1 WILD-TYPE" "SLCO6A1 WILD-TYPE" "SLCO6A1 WILD-TYPE" 
       TCGA-49-4512        TCGA-49-4514        TCGA-49-6742        TCGA-49-6743 
"SLCO6A1 WILD-TYPE"   "SLCO6A1 MUTATED" "SLCO6A1 WILD-TYPE" "SLCO6A1 WILD-TYPE" 
       TCGA-49-6744        TCGA-49-6745        TCGA-50-5044        TCGA-50-5045 
"SLCO6A1 WILD-TYPE" "SLCO6A1 WILD-TYPE" "SLCO6A1 WILD-TYPE" "SLCO6A1 WILD-TYPE" 
       TCGA-50-5049        TCGA-50-5051        TCGA-50-5055        TCGA-50-5066 
"SLCO6A1 WILD-TYPE" "SLCO6A1 WILD-TYPE" "SLCO6A1 WILD-TYPE" "SLCO6A1 WILD-TYPE" 
       TCGA-50-5068        TCGA-50-5072        TCGA-50-5930        TCGA-50-5931 
"SLCO6A1 WILD-TYPE" "SLCO6A1 WILD-TYPE" "SLCO6A1 WILD-TYPE" "SLCO6A1 WILD-TYPE" 
       TCGA-50-5932        TCGA-50-5933        TCGA-50-5935        TCGA-50-5936 
"SLCO6A1 WILD-TYPE" "SLCO6A1 WILD-TYPE" "SLCO6A1 WILD-TYPE" "SLCO6A1 WILD-TYPE" 
       TCGA-50-5939        TCGA-50-5941        TCGA-50-5942        TCGA-50-5944 
"SLCO6A1 WILD-TYPE" "SLCO6A1 WILD-TYPE" "SLCO6A1 WILD-TYPE" "SLCO6A1 WILD-TYPE" 
       TCGA-50-5946        TCGA-50-6590        TCGA-50-6591        TCGA-50-6592 
"SLCO6A1 WILD-TYPE" "SLCO6A1 WILD-TYPE" "SLCO6A1 WILD-TYPE" "SLCO6A1 WILD-TYPE" 
       TCGA-50-6593        TCGA-50-6594        TCGA-50-6595        TCGA-50-6597 
"SLCO6A1 WILD-TYPE" "SLCO6A1 WILD-TYPE" "SLCO6A1 WILD-TYPE" "SLCO6A1 WILD-TYPE" 
       TCGA-55-1592        TCGA-55-1594        TCGA-55-1595        TCGA-55-1596 
"SLCO6A1 WILD-TYPE" "SLCO6A1 WILD-TYPE" "SLCO6A1 WILD-TYPE" "SLCO6A1 WILD-TYPE" 
       TCGA-55-5899        TCGA-55-6543        TCGA-55-6642        TCGA-55-6712 
"SLCO6A1 WILD-TYPE" "SLCO6A1 WILD-TYPE" "SLCO6A1 WILD-TYPE" "SLCO6A1 WILD-TYPE" 
       TCGA-64-1676        TCGA-64-1677        TCGA-64-1678        TCGA-64-1680 
"SLCO6A1 WILD-TYPE" "SLCO6A1 WILD-TYPE" "SLCO6A1 WILD-TYPE" "SLCO6A1 WILD-TYPE" 
       TCGA-64-5774        TCGA-64-5775        TCGA-64-5778        TCGA-64-5779 
"SLCO6A1 WILD-TYPE" "SLCO6A1 WILD-TYPE" "SLCO6A1 WILD-TYPE" "SLCO6A1 WILD-TYPE" 
       TCGA-64-5781        TCGA-64-5815        TCGA-67-3770        TCGA-67-3771 
"SLCO6A1 WILD-TYPE" "SLCO6A1 WILD-TYPE" "SLCO6A1 WILD-TYPE" "SLCO6A1 WILD-TYPE" 
       TCGA-67-3772        TCGA-67-3773        TCGA-67-3774        TCGA-67-6215 
"SLCO6A1 WILD-TYPE" "SLCO6A1 WILD-TYPE" "SLCO6A1 WILD-TYPE" "SLCO6A1 WILD-TYPE" 
       TCGA-67-6216        TCGA-67-6217        TCGA-71-6725        TCGA-73-4658 
"SLCO6A1 WILD-TYPE" "SLCO6A1 WILD-TYPE" "SLCO6A1 WILD-TYPE" "SLCO6A1 WILD-TYPE" 
       TCGA-73-4659        TCGA-73-4662        TCGA-73-4666        TCGA-73-4668 
"SLCO6A1 WILD-TYPE" "SLCO6A1 WILD-TYPE" "SLCO6A1 WILD-TYPE" "SLCO6A1 WILD-TYPE" 
       TCGA-73-4670        TCGA-73-4675        TCGA-73-4676        TCGA-73-4677 
"SLCO6A1 WILD-TYPE" "SLCO6A1 WILD-TYPE" "SLCO6A1 WILD-TYPE" "SLCO6A1 WILD-TYPE" 
       TCGA-91-6828        TCGA-91-6829        TCGA-91-6831        TCGA-91-6835 
"SLCO6A1 WILD-TYPE" "SLCO6A1 WILD-TYPE" "SLCO6A1 WILD-TYPE" "SLCO6A1 WILD-TYPE" 
       TCGA-91-6836 
"SLCO6A1 WILD-TYPE" 
[1] "hr=" "1.4"
D291V2, continuous
D291V3, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  SLCO6A1 MUTATED      3    4
  SLCO6A1 WILD-TYPE   90   75
        clus
vv       SLCO6A1 MUTATED SLCO6A1 WILD-TYPE
  FEMALE               3                90
  MALE                 4                75
D291V4, continuous
[1] "Remove cluster labels:" "SLCO6A1 MUTATED"       
clus
  SLCO6A1 MUTATED SLCO6A1 WILD-TYPE 
                1                11 
       TCGA-35-4122        TCGA-35-4123        TCGA-35-5375        TCGA-64-1677 
"SLCO6A1 WILD-TYPE" "SLCO6A1 WILD-TYPE" "SLCO6A1 WILD-TYPE" "SLCO6A1 WILD-TYPE" 
       TCGA-64-5778        TCGA-71-6725        TCGA-73-4659        TCGA-73-4662 
"SLCO6A1 WILD-TYPE" "SLCO6A1 WILD-TYPE" "SLCO6A1 WILD-TYPE" "SLCO6A1 WILD-TYPE" 
       TCGA-73-4666        TCGA-73-4668        TCGA-73-4676 
"SLCO6A1 WILD-TYPE" "SLCO6A1 WILD-TYPE" "SLCO6A1 WILD-TYPE" 
D291V5, multiclass
D291V6, multiclass
    clus
vv   SLCO6A1 MUTATED SLCO6A1 WILD-TYPE
  T1               1                40
  T2               4               104
  T3               1                13
  T4               1                 7
D291V7, multiclass
       clus
vv      SLCO6A1 MUTATED SLCO6A1 WILD-TYPE
  N0                  4                91
  N1                  1                36
  N2+N3               1                34
D291V8, multiclass
    clus
vv   SLCO6A1 MUTATED SLCO6A1 WILD-TYPE
  M0               6               131
  M1               1                 8
  MX               0                22
D291V9, multiclass
     clus
vv    SLCO6A1 MUTATED SLCO6A1 WILD-TYPE
  I                 4                84
  II                0                33
  III               2                37
  IV                1                 8
D291V10, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  SLCO6A1 MUTATED      0    7
  SLCO6A1 WILD-TYPE   16  149
     clus
vv    SLCO6A1 MUTATED SLCO6A1 WILD-TYPE
  NO                0                16
  YES               7               149
D291V11, continuous
D291V12, continuous
D291V13, multiclass
                                             clus
vv                                            SLCO6A1 MUTATED SLCO6A1 WILD-TYPE
  CURRENT REFORMED SMOKER FOR < OR = 15 YEARS               1                61
  CURRENT REFORMED SMOKER FOR > 15 YEARS                    3                43
  CURRENT SMOKER                                            2                26
  LIFELONG NON-SMOKER                                       1                23
D291V14, continuous
[1] "Remove cluster labels:" "SLCO6A1 MUTATED"       
clus
  SLCO6A1 MUTATED SLCO6A1 WILD-TYPE 
                2                66 
       TCGA-05-4384        TCGA-05-4405        TCGA-05-4410        TCGA-05-4415 
"SLCO6A1 WILD-TYPE" "SLCO6A1 WILD-TYPE" "SLCO6A1 WILD-TYPE" "SLCO6A1 WILD-TYPE" 
       TCGA-05-4417        TCGA-05-4424        TCGA-05-4427        TCGA-05-4433 
"SLCO6A1 WILD-TYPE" "SLCO6A1 WILD-TYPE" "SLCO6A1 WILD-TYPE" "SLCO6A1 WILD-TYPE" 
       TCGA-05-5420        TCGA-05-5423        TCGA-05-5425        TCGA-05-5428 
"SLCO6A1 WILD-TYPE" "SLCO6A1 WILD-TYPE" "SLCO6A1 WILD-TYPE" "SLCO6A1 WILD-TYPE" 
       TCGA-35-4122        TCGA-35-4123        TCGA-35-5375        TCGA-38-4625 
"SLCO6A1 WILD-TYPE" "SLCO6A1 WILD-TYPE" "SLCO6A1 WILD-TYPE" "SLCO6A1 WILD-TYPE" 
       TCGA-38-4626        TCGA-44-2655        TCGA-44-2656        TCGA-44-2657 
"SLCO6A1 WILD-TYPE" "SLCO6A1 WILD-TYPE" "SLCO6A1 WILD-TYPE" "SLCO6A1 WILD-TYPE" 
       TCGA-44-2659        TCGA-44-2662        TCGA-44-2666        TCGA-44-2668 
"SLCO6A1 WILD-TYPE" "SLCO6A1 WILD-TYPE" "SLCO6A1 WILD-TYPE" "SLCO6A1 WILD-TYPE" 
       TCGA-44-3396        TCGA-44-3398        TCGA-44-3918        TCGA-44-4112 
"SLCO6A1 WILD-TYPE" "SLCO6A1 WILD-TYPE" "SLCO6A1 WILD-TYPE" "SLCO6A1 WILD-TYPE" 
       TCGA-44-5645        TCGA-44-6144        TCGA-44-6145        TCGA-44-6147 
"SLCO6A1 WILD-TYPE" "SLCO6A1 WILD-TYPE" "SLCO6A1 WILD-TYPE" "SLCO6A1 WILD-TYPE" 
       TCGA-44-6148        TCGA-44-6774        TCGA-44-6775        TCGA-44-6776 
"SLCO6A1 WILD-TYPE" "SLCO6A1 WILD-TYPE" "SLCO6A1 WILD-TYPE" "SLCO6A1 WILD-TYPE" 
       TCGA-44-6777        TCGA-44-6778        TCGA-44-6779        TCGA-49-4486 
"SLCO6A1 WILD-TYPE" "SLCO6A1 WILD-TYPE" "SLCO6A1 WILD-TYPE" "SLCO6A1 WILD-TYPE" 
       TCGA-49-4494        TCGA-49-4505        TCGA-55-1592        TCGA-55-1594 
"SLCO6A1 WILD-TYPE" "SLCO6A1 WILD-TYPE" "SLCO6A1 WILD-TYPE" "SLCO6A1 WILD-TYPE" 
       TCGA-55-1595        TCGA-55-1596        TCGA-55-5899        TCGA-55-6642 
"SLCO6A1 WILD-TYPE" "SLCO6A1 WILD-TYPE" "SLCO6A1 WILD-TYPE" "SLCO6A1 WILD-TYPE" 
       TCGA-55-6712        TCGA-64-1677        TCGA-64-1678        TCGA-64-1680 
"SLCO6A1 WILD-TYPE" "SLCO6A1 WILD-TYPE" "SLCO6A1 WILD-TYPE" "SLCO6A1 WILD-TYPE" 
       TCGA-64-5774        TCGA-64-5775        TCGA-64-5778        TCGA-64-5779 
"SLCO6A1 WILD-TYPE" "SLCO6A1 WILD-TYPE" "SLCO6A1 WILD-TYPE" "SLCO6A1 WILD-TYPE" 
       TCGA-64-5781        TCGA-73-4659        TCGA-73-4662        TCGA-73-4666 
"SLCO6A1 WILD-TYPE" "SLCO6A1 WILD-TYPE" "SLCO6A1 WILD-TYPE" "SLCO6A1 WILD-TYPE" 
       TCGA-73-4668        TCGA-73-4670        TCGA-73-4675        TCGA-73-4676 
"SLCO6A1 WILD-TYPE" "SLCO6A1 WILD-TYPE" "SLCO6A1 WILD-TYPE" "SLCO6A1 WILD-TYPE" 
       TCGA-91-6829        TCGA-91-6836 
"SLCO6A1 WILD-TYPE" "SLCO6A1 WILD-TYPE" 

Clustering(292) Variable = OR10X1 MUTATION ANALYSIS
D292V1, survival
                  sevent
clus2               0  1
  OR10X1 MUTATED    5  1
  OR10X1 WILD-TYPE 94 49
  OR10X1 MUTATED OR10X1 WILD-TYPE 
               6              143 
  OR10X1 MUTATED OR10X1 WILD-TYPE 
               1               49 
$`OR10X1 MUTATED`
TCGA-05-4398 TCGA-05-4415 TCGA-05-4417 TCGA-44-2662 TCGA-49-6743 TCGA-91-6836 
       47.05         2.96        14.93        15.78        12.13         0.36 

$`OR10X1 WILD-TYPE`
TCGA-05-4249 TCGA-05-4250 TCGA-05-4382 TCGA-05-4384 TCGA-05-4390 TCGA-05-4396 
       38.07         3.98        19.92        14.01        37.02         9.96 
TCGA-05-4397 TCGA-05-4402 TCGA-05-4405 TCGA-05-4418 TCGA-05-4420 TCGA-05-4424 
       24.03         8.02        20.05         8.98        29.95        30.02 
TCGA-05-4426 TCGA-05-4427 TCGA-05-4430 TCGA-05-4432 TCGA-05-4433 TCGA-05-4434 
       26.01        26.01        25.02        25.02        24.00        15.02 
TCGA-05-5420 TCGA-05-5423 TCGA-05-5425 TCGA-05-5429 TCGA-05-5715 TCGA-35-3615 
        1.02         4.96         2.96         0.99         2.04         0.46 
TCGA-35-4122 TCGA-35-4123 TCGA-35-5375 TCGA-38-4625 TCGA-38-4626 TCGA-38-4627 
        7.36         5.95         8.68        47.61        85.32        37.71 
TCGA-38-4628 TCGA-38-4629 TCGA-38-4630 TCGA-38-4631 TCGA-38-4632 TCGA-38-6178 
       49.02        28.37        35.28        11.64        44.61         5.19 
TCGA-44-2655 TCGA-44-2656 TCGA-44-2657 TCGA-44-2659 TCGA-44-2661 TCGA-44-2665 
       18.87        19.10        13.15        17.39         3.39        13.15 
TCGA-44-2666 TCGA-44-2668 TCGA-44-3396 TCGA-44-3398 TCGA-44-3918 TCGA-44-3919 
        3.19         8.09        10.22         8.32         6.44         6.21 
TCGA-44-4112 TCGA-44-5643 TCGA-44-5645 TCGA-44-6144 TCGA-44-6145 TCGA-44-6146 
        4.60         3.48         6.84         0.30         3.35         9.93 
TCGA-44-6147 TCGA-44-6148 TCGA-44-6774 TCGA-44-6775 TCGA-44-6776 TCGA-44-6777 
        7.76         3.12         5.42         2.70        63.72        32.45 
TCGA-44-6778 TCGA-44-6779 TCGA-49-4486 TCGA-49-4487 TCGA-49-4488 TCGA-49-4490 
       36.49        16.41        76.21        28.11        28.57        12.66 
TCGA-49-4494 TCGA-49-4501 TCGA-49-4505 TCGA-49-4506 TCGA-49-4507 TCGA-49-4510 
       35.54        46.72        14.07        32.84         8.81        29.46 
TCGA-49-4512 TCGA-49-4514 TCGA-49-6742 TCGA-49-6744 TCGA-49-6745 TCGA-50-5044 
       29.75        43.20        15.02        12.99         4.93        20.48 
TCGA-50-5045 TCGA-50-5049 TCGA-50-5051 TCGA-50-5055 TCGA-50-5066 TCGA-50-5068 
       71.47        48.82        14.96        25.81         9.76        49.28 
TCGA-50-5072 TCGA-50-5930 TCGA-50-5931 TCGA-50-5932 TCGA-50-5933 TCGA-50-5935 
        8.05         9.27         8.78        35.87        77.88        21.47 
TCGA-50-5936 TCGA-50-5939 TCGA-50-5941 TCGA-50-5942 TCGA-50-5944 TCGA-50-5946 
        8.45        15.12         9.37         4.44        12.26        11.47 
TCGA-50-6590 TCGA-50-6591 TCGA-50-6592 TCGA-50-6593 TCGA-50-6594 TCGA-50-6595 
       42.31         3.88        25.51        11.05        12.16         6.21 
TCGA-50-6597 TCGA-55-1592 TCGA-55-1594 TCGA-55-1595 TCGA-55-1596 TCGA-55-5899 
       33.37        23.05        38.73        48.62        45.17         2.86 
TCGA-55-6543 TCGA-55-6642 TCGA-55-6712 TCGA-64-1676 TCGA-64-1677 TCGA-64-1678 
        0.07        32.61         0.79        56.81        20.65        39.09 
TCGA-64-1680 TCGA-64-5774 TCGA-64-5775 TCGA-64-5778 TCGA-64-5779 TCGA-64-5781 
       37.02        83.84         0.10        30.44        16.67        39.52 
TCGA-64-5815 TCGA-67-3770 TCGA-67-3771 TCGA-67-3772 TCGA-67-3773 TCGA-67-3774 
        7.33         0.99         1.97         0.59         2.04         0.59 
TCGA-67-6215 TCGA-67-6216 TCGA-67-6217 TCGA-71-6725 TCGA-73-4658 TCGA-73-4659 
        0.89         0.69        13.87         2.01        52.57        23.38 
TCGA-73-4662 TCGA-73-4666 TCGA-73-4668 TCGA-73-4670 TCGA-73-4675 TCGA-73-4676 
       29.95        20.28        15.35         0.46         1.32         4.01 
TCGA-73-4677 TCGA-91-6828 TCGA-91-6829 TCGA-91-6831 TCGA-91-6835 
        1.25         1.22        41.33         1.28         1.15 

  OR10X1 MUTATED OR10X1 WILD-TYPE 
            0.36             0.07 
  OR10X1 MUTATED OR10X1 WILD-TYPE 
           47.05            85.32 
  OR10X1 MUTATED OR10X1 WILD-TYPE 
           13.53            13.87 
[1] "0.4 - 47.0 (13.5)" "0.1 - 85.3 (13.9)"
      TCGA-05-4249       TCGA-05-4250       TCGA-05-4382       TCGA-05-4384 
"OR10X1 WILD-TYPE" "OR10X1 WILD-TYPE" "OR10X1 WILD-TYPE" "OR10X1 WILD-TYPE" 
      TCGA-05-4390       TCGA-05-4396       TCGA-05-4397       TCGA-05-4398 
"OR10X1 WILD-TYPE" "OR10X1 WILD-TYPE" "OR10X1 WILD-TYPE"   "OR10X1 MUTATED" 
      TCGA-05-4402       TCGA-05-4405       TCGA-05-4415       TCGA-05-4417 
"OR10X1 WILD-TYPE" "OR10X1 WILD-TYPE"   "OR10X1 MUTATED"   "OR10X1 MUTATED" 
      TCGA-05-4418       TCGA-05-4420       TCGA-05-4424       TCGA-05-4426 
"OR10X1 WILD-TYPE" "OR10X1 WILD-TYPE" "OR10X1 WILD-TYPE" "OR10X1 WILD-TYPE" 
      TCGA-05-4427       TCGA-05-4430       TCGA-05-4432       TCGA-05-4433 
"OR10X1 WILD-TYPE" "OR10X1 WILD-TYPE" "OR10X1 WILD-TYPE" "OR10X1 WILD-TYPE" 
      TCGA-05-4434       TCGA-05-5420       TCGA-05-5423       TCGA-05-5425 
"OR10X1 WILD-TYPE" "OR10X1 WILD-TYPE" "OR10X1 WILD-TYPE" "OR10X1 WILD-TYPE" 
      TCGA-05-5429       TCGA-05-5715       TCGA-35-3615       TCGA-35-4122 
"OR10X1 WILD-TYPE" "OR10X1 WILD-TYPE" "OR10X1 WILD-TYPE" "OR10X1 WILD-TYPE" 
      TCGA-35-4123       TCGA-35-5375       TCGA-38-4625       TCGA-38-4626 
"OR10X1 WILD-TYPE" "OR10X1 WILD-TYPE" "OR10X1 WILD-TYPE" "OR10X1 WILD-TYPE" 
      TCGA-38-4627       TCGA-38-4628       TCGA-38-4629       TCGA-38-4630 
"OR10X1 WILD-TYPE" "OR10X1 WILD-TYPE" "OR10X1 WILD-TYPE" "OR10X1 WILD-TYPE" 
      TCGA-38-4631       TCGA-38-4632       TCGA-38-6178       TCGA-44-2655 
"OR10X1 WILD-TYPE" "OR10X1 WILD-TYPE" "OR10X1 WILD-TYPE" "OR10X1 WILD-TYPE" 
      TCGA-44-2656       TCGA-44-2657       TCGA-44-2659       TCGA-44-2661 
"OR10X1 WILD-TYPE" "OR10X1 WILD-TYPE" "OR10X1 WILD-TYPE" "OR10X1 WILD-TYPE" 
      TCGA-44-2662       TCGA-44-2665       TCGA-44-2666       TCGA-44-2668 
  "OR10X1 MUTATED" "OR10X1 WILD-TYPE" "OR10X1 WILD-TYPE" "OR10X1 WILD-TYPE" 
      TCGA-44-3396       TCGA-44-3398       TCGA-44-3918       TCGA-44-3919 
"OR10X1 WILD-TYPE" "OR10X1 WILD-TYPE" "OR10X1 WILD-TYPE" "OR10X1 WILD-TYPE" 
      TCGA-44-4112       TCGA-44-5643       TCGA-44-5645       TCGA-44-6144 
"OR10X1 WILD-TYPE" "OR10X1 WILD-TYPE" "OR10X1 WILD-TYPE" "OR10X1 WILD-TYPE" 
      TCGA-44-6145       TCGA-44-6146       TCGA-44-6147       TCGA-44-6148 
"OR10X1 WILD-TYPE" "OR10X1 WILD-TYPE" "OR10X1 WILD-TYPE" "OR10X1 WILD-TYPE" 
      TCGA-44-6774       TCGA-44-6775       TCGA-44-6776       TCGA-44-6777 
"OR10X1 WILD-TYPE" "OR10X1 WILD-TYPE" "OR10X1 WILD-TYPE" "OR10X1 WILD-TYPE" 
      TCGA-44-6778       TCGA-44-6779       TCGA-49-4486       TCGA-49-4487 
"OR10X1 WILD-TYPE" "OR10X1 WILD-TYPE" "OR10X1 WILD-TYPE" "OR10X1 WILD-TYPE" 
      TCGA-49-4488       TCGA-49-4490       TCGA-49-4494       TCGA-49-4501 
"OR10X1 WILD-TYPE" "OR10X1 WILD-TYPE" "OR10X1 WILD-TYPE" "OR10X1 WILD-TYPE" 
      TCGA-49-4505       TCGA-49-4506       TCGA-49-4507       TCGA-49-4510 
"OR10X1 WILD-TYPE" "OR10X1 WILD-TYPE" "OR10X1 WILD-TYPE" "OR10X1 WILD-TYPE" 
      TCGA-49-4512       TCGA-49-4514       TCGA-49-6742       TCGA-49-6743 
"OR10X1 WILD-TYPE" "OR10X1 WILD-TYPE" "OR10X1 WILD-TYPE"   "OR10X1 MUTATED" 
      TCGA-49-6744       TCGA-49-6745       TCGA-50-5044       TCGA-50-5045 
"OR10X1 WILD-TYPE" "OR10X1 WILD-TYPE" "OR10X1 WILD-TYPE" "OR10X1 WILD-TYPE" 
      TCGA-50-5049       TCGA-50-5051       TCGA-50-5055       TCGA-50-5066 
"OR10X1 WILD-TYPE" "OR10X1 WILD-TYPE" "OR10X1 WILD-TYPE" "OR10X1 WILD-TYPE" 
      TCGA-50-5068       TCGA-50-5072       TCGA-50-5930       TCGA-50-5931 
"OR10X1 WILD-TYPE" "OR10X1 WILD-TYPE" "OR10X1 WILD-TYPE" "OR10X1 WILD-TYPE" 
      TCGA-50-5932       TCGA-50-5933       TCGA-50-5935       TCGA-50-5936 
"OR10X1 WILD-TYPE" "OR10X1 WILD-TYPE" "OR10X1 WILD-TYPE" "OR10X1 WILD-TYPE" 
      TCGA-50-5939       TCGA-50-5941       TCGA-50-5942       TCGA-50-5944 
"OR10X1 WILD-TYPE" "OR10X1 WILD-TYPE" "OR10X1 WILD-TYPE" "OR10X1 WILD-TYPE" 
      TCGA-50-5946       TCGA-50-6590       TCGA-50-6591       TCGA-50-6592 
"OR10X1 WILD-TYPE" "OR10X1 WILD-TYPE" "OR10X1 WILD-TYPE" "OR10X1 WILD-TYPE" 
      TCGA-50-6593       TCGA-50-6594       TCGA-50-6595       TCGA-50-6597 
"OR10X1 WILD-TYPE" "OR10X1 WILD-TYPE" "OR10X1 WILD-TYPE" "OR10X1 WILD-TYPE" 
      TCGA-55-1592       TCGA-55-1594       TCGA-55-1595       TCGA-55-1596 
"OR10X1 WILD-TYPE" "OR10X1 WILD-TYPE" "OR10X1 WILD-TYPE" "OR10X1 WILD-TYPE" 
      TCGA-55-5899       TCGA-55-6543       TCGA-55-6642       TCGA-55-6712 
"OR10X1 WILD-TYPE" "OR10X1 WILD-TYPE" "OR10X1 WILD-TYPE" "OR10X1 WILD-TYPE" 
      TCGA-64-1676       TCGA-64-1677       TCGA-64-1678       TCGA-64-1680 
"OR10X1 WILD-TYPE" "OR10X1 WILD-TYPE" "OR10X1 WILD-TYPE" "OR10X1 WILD-TYPE" 
      TCGA-64-5774       TCGA-64-5775       TCGA-64-5778       TCGA-64-5779 
"OR10X1 WILD-TYPE" "OR10X1 WILD-TYPE" "OR10X1 WILD-TYPE" "OR10X1 WILD-TYPE" 
      TCGA-64-5781       TCGA-64-5815       TCGA-67-3770       TCGA-67-3771 
"OR10X1 WILD-TYPE" "OR10X1 WILD-TYPE" "OR10X1 WILD-TYPE" "OR10X1 WILD-TYPE" 
      TCGA-67-3772       TCGA-67-3773       TCGA-67-3774       TCGA-67-6215 
"OR10X1 WILD-TYPE" "OR10X1 WILD-TYPE" "OR10X1 WILD-TYPE" "OR10X1 WILD-TYPE" 
      TCGA-67-6216       TCGA-67-6217       TCGA-71-6725       TCGA-73-4658 
"OR10X1 WILD-TYPE" "OR10X1 WILD-TYPE" "OR10X1 WILD-TYPE" "OR10X1 WILD-TYPE" 
      TCGA-73-4659       TCGA-73-4662       TCGA-73-4666       TCGA-73-4668 
"OR10X1 WILD-TYPE" "OR10X1 WILD-TYPE" "OR10X1 WILD-TYPE" "OR10X1 WILD-TYPE" 
      TCGA-73-4670       TCGA-73-4675       TCGA-73-4676       TCGA-73-4677 
"OR10X1 WILD-TYPE" "OR10X1 WILD-TYPE" "OR10X1 WILD-TYPE" "OR10X1 WILD-TYPE" 
      TCGA-91-6828       TCGA-91-6829       TCGA-91-6831       TCGA-91-6835 
"OR10X1 WILD-TYPE" "OR10X1 WILD-TYPE" "OR10X1 WILD-TYPE" "OR10X1 WILD-TYPE" 
      TCGA-91-6836 
  "OR10X1 MUTATED" 
      TCGA-05-4249       TCGA-05-4250       TCGA-05-4382       TCGA-05-4384 
"OR10X1 WILD-TYPE" "OR10X1 WILD-TYPE" "OR10X1 WILD-TYPE" "OR10X1 WILD-TYPE" 
      TCGA-05-4390       TCGA-05-4396       TCGA-05-4397       TCGA-05-4398 
"OR10X1 WILD-TYPE" "OR10X1 WILD-TYPE" "OR10X1 WILD-TYPE"   "OR10X1 MUTATED" 
      TCGA-05-4402       TCGA-05-4405       TCGA-05-4415       TCGA-05-4417 
"OR10X1 WILD-TYPE" "OR10X1 WILD-TYPE"   "OR10X1 MUTATED"   "OR10X1 MUTATED" 
      TCGA-05-4418       TCGA-05-4420       TCGA-05-4424       TCGA-05-4426 
"OR10X1 WILD-TYPE" "OR10X1 WILD-TYPE" "OR10X1 WILD-TYPE" "OR10X1 WILD-TYPE" 
      TCGA-05-4427       TCGA-05-4430       TCGA-05-4432       TCGA-05-4433 
"OR10X1 WILD-TYPE" "OR10X1 WILD-TYPE" "OR10X1 WILD-TYPE" "OR10X1 WILD-TYPE" 
      TCGA-05-4434       TCGA-05-5420       TCGA-05-5423       TCGA-05-5425 
"OR10X1 WILD-TYPE" "OR10X1 WILD-TYPE" "OR10X1 WILD-TYPE" "OR10X1 WILD-TYPE" 
      TCGA-05-5429       TCGA-05-5715       TCGA-35-3615       TCGA-35-4122 
"OR10X1 WILD-TYPE" "OR10X1 WILD-TYPE" "OR10X1 WILD-TYPE" "OR10X1 WILD-TYPE" 
      TCGA-35-4123       TCGA-35-5375       TCGA-38-4625       TCGA-38-4626 
"OR10X1 WILD-TYPE" "OR10X1 WILD-TYPE" "OR10X1 WILD-TYPE" "OR10X1 WILD-TYPE" 
      TCGA-38-4627       TCGA-38-4628       TCGA-38-4629       TCGA-38-4630 
"OR10X1 WILD-TYPE" "OR10X1 WILD-TYPE" "OR10X1 WILD-TYPE" "OR10X1 WILD-TYPE" 
      TCGA-38-4631       TCGA-38-4632       TCGA-38-6178       TCGA-44-2655 
"OR10X1 WILD-TYPE" "OR10X1 WILD-TYPE" "OR10X1 WILD-TYPE" "OR10X1 WILD-TYPE" 
      TCGA-44-2656       TCGA-44-2657       TCGA-44-2659       TCGA-44-2661 
"OR10X1 WILD-TYPE" "OR10X1 WILD-TYPE" "OR10X1 WILD-TYPE" "OR10X1 WILD-TYPE" 
      TCGA-44-2662       TCGA-44-2665       TCGA-44-2666       TCGA-44-2668 
  "OR10X1 MUTATED" "OR10X1 WILD-TYPE" "OR10X1 WILD-TYPE" "OR10X1 WILD-TYPE" 
      TCGA-44-3396       TCGA-44-3398       TCGA-44-3918       TCGA-44-3919 
"OR10X1 WILD-TYPE" "OR10X1 WILD-TYPE" "OR10X1 WILD-TYPE" "OR10X1 WILD-TYPE" 
      TCGA-44-4112       TCGA-44-5643       TCGA-44-5645       TCGA-44-6144 
"OR10X1 WILD-TYPE" "OR10X1 WILD-TYPE" "OR10X1 WILD-TYPE" "OR10X1 WILD-TYPE" 
      TCGA-44-6145       TCGA-44-6146       TCGA-44-6147       TCGA-44-6148 
"OR10X1 WILD-TYPE" "OR10X1 WILD-TYPE" "OR10X1 WILD-TYPE" "OR10X1 WILD-TYPE" 
      TCGA-44-6774       TCGA-44-6775       TCGA-44-6776       TCGA-44-6777 
"OR10X1 WILD-TYPE" "OR10X1 WILD-TYPE" "OR10X1 WILD-TYPE" "OR10X1 WILD-TYPE" 
      TCGA-44-6778       TCGA-44-6779       TCGA-49-4486       TCGA-49-4487 
"OR10X1 WILD-TYPE" "OR10X1 WILD-TYPE" "OR10X1 WILD-TYPE" "OR10X1 WILD-TYPE" 
      TCGA-49-4488       TCGA-49-4490       TCGA-49-4494       TCGA-49-4501 
"OR10X1 WILD-TYPE" "OR10X1 WILD-TYPE" "OR10X1 WILD-TYPE" "OR10X1 WILD-TYPE" 
      TCGA-49-4505       TCGA-49-4506       TCGA-49-4507       TCGA-49-4510 
"OR10X1 WILD-TYPE" "OR10X1 WILD-TYPE" "OR10X1 WILD-TYPE" "OR10X1 WILD-TYPE" 
      TCGA-49-4512       TCGA-49-4514       TCGA-49-6742       TCGA-49-6743 
"OR10X1 WILD-TYPE" "OR10X1 WILD-TYPE" "OR10X1 WILD-TYPE"   "OR10X1 MUTATED" 
      TCGA-49-6744       TCGA-49-6745       TCGA-50-5044       TCGA-50-5045 
"OR10X1 WILD-TYPE" "OR10X1 WILD-TYPE" "OR10X1 WILD-TYPE" "OR10X1 WILD-TYPE" 
      TCGA-50-5049       TCGA-50-5051       TCGA-50-5055       TCGA-50-5066 
"OR10X1 WILD-TYPE" "OR10X1 WILD-TYPE" "OR10X1 WILD-TYPE" "OR10X1 WILD-TYPE" 
      TCGA-50-5068       TCGA-50-5072       TCGA-50-5930       TCGA-50-5931 
"OR10X1 WILD-TYPE" "OR10X1 WILD-TYPE" "OR10X1 WILD-TYPE" "OR10X1 WILD-TYPE" 
      TCGA-50-5932       TCGA-50-5933       TCGA-50-5935       TCGA-50-5936 
"OR10X1 WILD-TYPE" "OR10X1 WILD-TYPE" "OR10X1 WILD-TYPE" "OR10X1 WILD-TYPE" 
      TCGA-50-5939       TCGA-50-5941       TCGA-50-5942       TCGA-50-5944 
"OR10X1 WILD-TYPE" "OR10X1 WILD-TYPE" "OR10X1 WILD-TYPE" "OR10X1 WILD-TYPE" 
      TCGA-50-5946       TCGA-50-6590       TCGA-50-6591       TCGA-50-6592 
"OR10X1 WILD-TYPE" "OR10X1 WILD-TYPE" "OR10X1 WILD-TYPE" "OR10X1 WILD-TYPE" 
      TCGA-50-6593       TCGA-50-6594       TCGA-50-6595       TCGA-50-6597 
"OR10X1 WILD-TYPE" "OR10X1 WILD-TYPE" "OR10X1 WILD-TYPE" "OR10X1 WILD-TYPE" 
      TCGA-55-1592       TCGA-55-1594       TCGA-55-1595       TCGA-55-1596 
"OR10X1 WILD-TYPE" "OR10X1 WILD-TYPE" "OR10X1 WILD-TYPE" "OR10X1 WILD-TYPE" 
      TCGA-55-5899       TCGA-55-6543       TCGA-55-6642       TCGA-55-6712 
"OR10X1 WILD-TYPE" "OR10X1 WILD-TYPE" "OR10X1 WILD-TYPE" "OR10X1 WILD-TYPE" 
      TCGA-64-1676       TCGA-64-1677       TCGA-64-1678       TCGA-64-1680 
"OR10X1 WILD-TYPE" "OR10X1 WILD-TYPE" "OR10X1 WILD-TYPE" "OR10X1 WILD-TYPE" 
      TCGA-64-5774       TCGA-64-5775       TCGA-64-5778       TCGA-64-5779 
"OR10X1 WILD-TYPE" "OR10X1 WILD-TYPE" "OR10X1 WILD-TYPE" "OR10X1 WILD-TYPE" 
      TCGA-64-5781       TCGA-64-5815       TCGA-67-3770       TCGA-67-3771 
"OR10X1 WILD-TYPE" "OR10X1 WILD-TYPE" "OR10X1 WILD-TYPE" "OR10X1 WILD-TYPE" 
      TCGA-67-3772       TCGA-67-3773       TCGA-67-3774       TCGA-67-6215 
"OR10X1 WILD-TYPE" "OR10X1 WILD-TYPE" "OR10X1 WILD-TYPE" "OR10X1 WILD-TYPE" 
      TCGA-67-6216       TCGA-67-6217       TCGA-71-6725       TCGA-73-4658 
"OR10X1 WILD-TYPE" "OR10X1 WILD-TYPE" "OR10X1 WILD-TYPE" "OR10X1 WILD-TYPE" 
      TCGA-73-4659       TCGA-73-4662       TCGA-73-4666       TCGA-73-4668 
"OR10X1 WILD-TYPE" "OR10X1 WILD-TYPE" "OR10X1 WILD-TYPE" "OR10X1 WILD-TYPE" 
      TCGA-73-4670       TCGA-73-4675       TCGA-73-4676       TCGA-73-4677 
"OR10X1 WILD-TYPE" "OR10X1 WILD-TYPE" "OR10X1 WILD-TYPE" "OR10X1 WILD-TYPE" 
      TCGA-91-6828       TCGA-91-6829       TCGA-91-6831       TCGA-91-6835 
"OR10X1 WILD-TYPE" "OR10X1 WILD-TYPE" "OR10X1 WILD-TYPE" "OR10X1 WILD-TYPE" 
      TCGA-91-6836 
  "OR10X1 MUTATED" 
      TCGA-05-4249       TCGA-05-4250       TCGA-05-4382       TCGA-05-4384 
"OR10X1 WILD-TYPE" "OR10X1 WILD-TYPE" "OR10X1 WILD-TYPE" "OR10X1 WILD-TYPE" 
      TCGA-05-4390       TCGA-05-4396       TCGA-05-4397       TCGA-05-4398 
"OR10X1 WILD-TYPE" "OR10X1 WILD-TYPE" "OR10X1 WILD-TYPE"   "OR10X1 MUTATED" 
      TCGA-05-4402       TCGA-05-4405       TCGA-05-4415       TCGA-05-4417 
"OR10X1 WILD-TYPE" "OR10X1 WILD-TYPE"   "OR10X1 MUTATED"   "OR10X1 MUTATED" 
      TCGA-05-4418       TCGA-05-4420       TCGA-05-4424       TCGA-05-4426 
"OR10X1 WILD-TYPE" "OR10X1 WILD-TYPE" "OR10X1 WILD-TYPE" "OR10X1 WILD-TYPE" 
      TCGA-05-4427       TCGA-05-4430       TCGA-05-4432       TCGA-05-4433 
"OR10X1 WILD-TYPE" "OR10X1 WILD-TYPE" "OR10X1 WILD-TYPE" "OR10X1 WILD-TYPE" 
      TCGA-05-4434       TCGA-05-5420       TCGA-05-5423       TCGA-05-5425 
"OR10X1 WILD-TYPE" "OR10X1 WILD-TYPE" "OR10X1 WILD-TYPE" "OR10X1 WILD-TYPE" 
      TCGA-05-5429       TCGA-05-5715       TCGA-35-3615       TCGA-35-4122 
"OR10X1 WILD-TYPE" "OR10X1 WILD-TYPE" "OR10X1 WILD-TYPE" "OR10X1 WILD-TYPE" 
      TCGA-35-4123       TCGA-35-5375       TCGA-38-4625       TCGA-38-4626 
"OR10X1 WILD-TYPE" "OR10X1 WILD-TYPE" "OR10X1 WILD-TYPE" "OR10X1 WILD-TYPE" 
      TCGA-38-4627       TCGA-38-4628       TCGA-38-4629       TCGA-38-4630 
"OR10X1 WILD-TYPE" "OR10X1 WILD-TYPE" "OR10X1 WILD-TYPE" "OR10X1 WILD-TYPE" 
      TCGA-38-4631       TCGA-38-4632       TCGA-38-6178       TCGA-44-2655 
"OR10X1 WILD-TYPE" "OR10X1 WILD-TYPE" "OR10X1 WILD-TYPE" "OR10X1 WILD-TYPE" 
      TCGA-44-2656       TCGA-44-2657       TCGA-44-2659       TCGA-44-2661 
"OR10X1 WILD-TYPE" "OR10X1 WILD-TYPE" "OR10X1 WILD-TYPE" "OR10X1 WILD-TYPE" 
      TCGA-44-2662       TCGA-44-2665       TCGA-44-2666       TCGA-44-2668 
  "OR10X1 MUTATED" "OR10X1 WILD-TYPE" "OR10X1 WILD-TYPE" "OR10X1 WILD-TYPE" 
      TCGA-44-3396       TCGA-44-3398       TCGA-44-3918       TCGA-44-3919 
"OR10X1 WILD-TYPE" "OR10X1 WILD-TYPE" "OR10X1 WILD-TYPE" "OR10X1 WILD-TYPE" 
      TCGA-44-4112       TCGA-44-5643       TCGA-44-5645       TCGA-44-6144 
"OR10X1 WILD-TYPE" "OR10X1 WILD-TYPE" "OR10X1 WILD-TYPE" "OR10X1 WILD-TYPE" 
      TCGA-44-6145       TCGA-44-6146       TCGA-44-6147       TCGA-44-6148 
"OR10X1 WILD-TYPE" "OR10X1 WILD-TYPE" "OR10X1 WILD-TYPE" "OR10X1 WILD-TYPE" 
      TCGA-44-6774       TCGA-44-6775       TCGA-44-6776       TCGA-44-6777 
"OR10X1 WILD-TYPE" "OR10X1 WILD-TYPE" "OR10X1 WILD-TYPE" "OR10X1 WILD-TYPE" 
      TCGA-44-6778       TCGA-44-6779       TCGA-49-4486       TCGA-49-4487 
"OR10X1 WILD-TYPE" "OR10X1 WILD-TYPE" "OR10X1 WILD-TYPE" "OR10X1 WILD-TYPE" 
      TCGA-49-4488       TCGA-49-4490       TCGA-49-4494       TCGA-49-4501 
"OR10X1 WILD-TYPE" "OR10X1 WILD-TYPE" "OR10X1 WILD-TYPE" "OR10X1 WILD-TYPE" 
      TCGA-49-4505       TCGA-49-4506       TCGA-49-4507       TCGA-49-4510 
"OR10X1 WILD-TYPE" "OR10X1 WILD-TYPE" "OR10X1 WILD-TYPE" "OR10X1 WILD-TYPE" 
      TCGA-49-4512       TCGA-49-4514       TCGA-49-6742       TCGA-49-6743 
"OR10X1 WILD-TYPE" "OR10X1 WILD-TYPE" "OR10X1 WILD-TYPE"   "OR10X1 MUTATED" 
      TCGA-49-6744       TCGA-49-6745       TCGA-50-5044       TCGA-50-5045 
"OR10X1 WILD-TYPE" "OR10X1 WILD-TYPE" "OR10X1 WILD-TYPE" "OR10X1 WILD-TYPE" 
      TCGA-50-5049       TCGA-50-5051       TCGA-50-5055       TCGA-50-5066 
"OR10X1 WILD-TYPE" "OR10X1 WILD-TYPE" "OR10X1 WILD-TYPE" "OR10X1 WILD-TYPE" 
      TCGA-50-5068       TCGA-50-5072       TCGA-50-5930       TCGA-50-5931 
"OR10X1 WILD-TYPE" "OR10X1 WILD-TYPE" "OR10X1 WILD-TYPE" "OR10X1 WILD-TYPE" 
      TCGA-50-5932       TCGA-50-5933       TCGA-50-5935       TCGA-50-5936 
"OR10X1 WILD-TYPE" "OR10X1 WILD-TYPE" "OR10X1 WILD-TYPE" "OR10X1 WILD-TYPE" 
      TCGA-50-5939       TCGA-50-5941       TCGA-50-5942       TCGA-50-5944 
"OR10X1 WILD-TYPE" "OR10X1 WILD-TYPE" "OR10X1 WILD-TYPE" "OR10X1 WILD-TYPE" 
      TCGA-50-5946       TCGA-50-6590       TCGA-50-6591       TCGA-50-6592 
"OR10X1 WILD-TYPE" "OR10X1 WILD-TYPE" "OR10X1 WILD-TYPE" "OR10X1 WILD-TYPE" 
      TCGA-50-6593       TCGA-50-6594       TCGA-50-6595       TCGA-50-6597 
"OR10X1 WILD-TYPE" "OR10X1 WILD-TYPE" "OR10X1 WILD-TYPE" "OR10X1 WILD-TYPE" 
      TCGA-55-1592       TCGA-55-1594       TCGA-55-1595       TCGA-55-1596 
"OR10X1 WILD-TYPE" "OR10X1 WILD-TYPE" "OR10X1 WILD-TYPE" "OR10X1 WILD-TYPE" 
      TCGA-55-5899       TCGA-55-6543       TCGA-55-6642       TCGA-55-6712 
"OR10X1 WILD-TYPE" "OR10X1 WILD-TYPE" "OR10X1 WILD-TYPE" "OR10X1 WILD-TYPE" 
      TCGA-64-1676       TCGA-64-1677       TCGA-64-1678       TCGA-64-1680 
"OR10X1 WILD-TYPE" "OR10X1 WILD-TYPE" "OR10X1 WILD-TYPE" "OR10X1 WILD-TYPE" 
      TCGA-64-5774       TCGA-64-5775       TCGA-64-5778       TCGA-64-5779 
"OR10X1 WILD-TYPE" "OR10X1 WILD-TYPE" "OR10X1 WILD-TYPE" "OR10X1 WILD-TYPE" 
      TCGA-64-5781       TCGA-64-5815       TCGA-67-3770       TCGA-67-3771 
"OR10X1 WILD-TYPE" "OR10X1 WILD-TYPE" "OR10X1 WILD-TYPE" "OR10X1 WILD-TYPE" 
      TCGA-67-3772       TCGA-67-3773       TCGA-67-3774       TCGA-67-6215 
"OR10X1 WILD-TYPE" "OR10X1 WILD-TYPE" "OR10X1 WILD-TYPE" "OR10X1 WILD-TYPE" 
      TCGA-67-6216       TCGA-67-6217       TCGA-71-6725       TCGA-73-4658 
"OR10X1 WILD-TYPE" "OR10X1 WILD-TYPE" "OR10X1 WILD-TYPE" "OR10X1 WILD-TYPE" 
      TCGA-73-4659       TCGA-73-4662       TCGA-73-4666       TCGA-73-4668 
"OR10X1 WILD-TYPE" "OR10X1 WILD-TYPE" "OR10X1 WILD-TYPE" "OR10X1 WILD-TYPE" 
      TCGA-73-4670       TCGA-73-4675       TCGA-73-4676       TCGA-73-4677 
"OR10X1 WILD-TYPE" "OR10X1 WILD-TYPE" "OR10X1 WILD-TYPE" "OR10X1 WILD-TYPE" 
      TCGA-91-6828       TCGA-91-6829       TCGA-91-6831       TCGA-91-6835 
"OR10X1 WILD-TYPE" "OR10X1 WILD-TYPE" "OR10X1 WILD-TYPE" "OR10X1 WILD-TYPE" 
      TCGA-91-6836 
  "OR10X1 MUTATED" 
[1] "hr=" "1.5"
D292V2, continuous
D292V3, binary
[1] "tbl2"
                  cls
clus               [,1] [,2]
  OR10X1 MUTATED      5    3
  OR10X1 WILD-TYPE   88   76
        clus
vv       OR10X1 MUTATED OR10X1 WILD-TYPE
  FEMALE              5               88
  MALE                3               76
D292V4, continuous
D292V5, multiclass
D292V6, multiclass
    clus
vv   OR10X1 MUTATED OR10X1 WILD-TYPE
  T1              1               40
  T2              4              104
  T3              1               13
  T4              2                6
D292V7, multiclass
       clus
vv      OR10X1 MUTATED OR10X1 WILD-TYPE
  N0                 4               91
  N1                 0               37
  N2+N3              4               31
D292V8, multiclass
    clus
vv   OR10X1 MUTATED OR10X1 WILD-TYPE
  M0              6              131
  M1              0                9
  MX              2               20
D292V9, multiclass
     clus
vv    OR10X1 MUTATED OR10X1 WILD-TYPE
  I                4               84
  II               0               33
  III              4               35
  IV               0                9
D292V10, binary
[1] "tbl2"
                  cls
clus               [,1] [,2]
  OR10X1 MUTATED      0    8
  OR10X1 WILD-TYPE   16  148
     clus
vv    OR10X1 MUTATED OR10X1 WILD-TYPE
  NO               0               16
  YES              8              148
D292V11, continuous
D292V12, continuous
D292V13, multiclass
                                             clus
vv                                            OR10X1 MUTATED OR10X1 WILD-TYPE
  CURRENT REFORMED SMOKER FOR < OR = 15 YEARS              5               57
  CURRENT REFORMED SMOKER FOR > 15 YEARS                   1               45
  CURRENT SMOKER                                           2               26
  LIFELONG NON-SMOKER                                      0               24
D292V14, continuous

Clustering(293) Variable = PSG3 MUTATION ANALYSIS
D293V1, survival
                sevent
clus2             0  1
  PSG3 MUTATED    4  1
  PSG3 WILD-TYPE 95 49
  PSG3 MUTATED PSG3 WILD-TYPE 
             5            144 
  PSG3 MUTATED PSG3 WILD-TYPE 
             1             49 
$`PSG3 MUTATED`
TCGA-05-4398 TCGA-05-4417 TCGA-35-3615 TCGA-49-4494 TCGA-55-6712 
       47.05        14.93         0.46        35.54         0.79 

$`PSG3 WILD-TYPE`
TCGA-05-4249 TCGA-05-4250 TCGA-05-4382 TCGA-05-4384 TCGA-05-4390 TCGA-05-4396 
       38.07         3.98        19.92        14.01        37.02         9.96 
TCGA-05-4397 TCGA-05-4402 TCGA-05-4405 TCGA-05-4415 TCGA-05-4418 TCGA-05-4420 
       24.03         8.02        20.05         2.96         8.98        29.95 
TCGA-05-4424 TCGA-05-4426 TCGA-05-4427 TCGA-05-4430 TCGA-05-4432 TCGA-05-4433 
       30.02        26.01        26.01        25.02        25.02        24.00 
TCGA-05-4434 TCGA-05-5420 TCGA-05-5423 TCGA-05-5425 TCGA-05-5429 TCGA-05-5715 
       15.02         1.02         4.96         2.96         0.99         2.04 
TCGA-35-4122 TCGA-35-4123 TCGA-35-5375 TCGA-38-4625 TCGA-38-4626 TCGA-38-4627 
        7.36         5.95         8.68        47.61        85.32        37.71 
TCGA-38-4628 TCGA-38-4629 TCGA-38-4630 TCGA-38-4631 TCGA-38-4632 TCGA-38-6178 
       49.02        28.37        35.28        11.64        44.61         5.19 
TCGA-44-2655 TCGA-44-2656 TCGA-44-2657 TCGA-44-2659 TCGA-44-2661 TCGA-44-2662 
       18.87        19.10        13.15        17.39         3.39        15.78 
TCGA-44-2665 TCGA-44-2666 TCGA-44-2668 TCGA-44-3396 TCGA-44-3398 TCGA-44-3918 
       13.15         3.19         8.09        10.22         8.32         6.44 
TCGA-44-3919 TCGA-44-4112 TCGA-44-5643 TCGA-44-5645 TCGA-44-6144 TCGA-44-6145 
        6.21         4.60         3.48         6.84         0.30         3.35 
TCGA-44-6146 TCGA-44-6147 TCGA-44-6148 TCGA-44-6774 TCGA-44-6775 TCGA-44-6776 
        9.93         7.76         3.12         5.42         2.70        63.72 
TCGA-44-6777 TCGA-44-6778 TCGA-44-6779 TCGA-49-4486 TCGA-49-4487 TCGA-49-4488 
       32.45        36.49        16.41        76.21        28.11        28.57 
TCGA-49-4490 TCGA-49-4501 TCGA-49-4505 TCGA-49-4506 TCGA-49-4507 TCGA-49-4510 
       12.66        46.72        14.07        32.84         8.81        29.46 
TCGA-49-4512 TCGA-49-4514 TCGA-49-6742 TCGA-49-6743 TCGA-49-6744 TCGA-49-6745 
       29.75        43.20        15.02        12.13        12.99         4.93 
TCGA-50-5044 TCGA-50-5045 TCGA-50-5049 TCGA-50-5051 TCGA-50-5055 TCGA-50-5066 
       20.48        71.47        48.82        14.96        25.81         9.76 
TCGA-50-5068 TCGA-50-5072 TCGA-50-5930 TCGA-50-5931 TCGA-50-5932 TCGA-50-5933 
       49.28         8.05         9.27         8.78        35.87        77.88 
TCGA-50-5935 TCGA-50-5936 TCGA-50-5939 TCGA-50-5941 TCGA-50-5942 TCGA-50-5944 
       21.47         8.45        15.12         9.37         4.44        12.26 
TCGA-50-5946 TCGA-50-6590 TCGA-50-6591 TCGA-50-6592 TCGA-50-6593 TCGA-50-6594 
       11.47        42.31         3.88        25.51        11.05        12.16 
TCGA-50-6595 TCGA-50-6597 TCGA-55-1592 TCGA-55-1594 TCGA-55-1595 TCGA-55-1596 
        6.21        33.37        23.05        38.73        48.62        45.17 
TCGA-55-5899 TCGA-55-6543 TCGA-55-6642 TCGA-64-1676 TCGA-64-1677 TCGA-64-1678 
        2.86         0.07        32.61        56.81        20.65        39.09 
TCGA-64-1680 TCGA-64-5774 TCGA-64-5775 TCGA-64-5778 TCGA-64-5779 TCGA-64-5781 
       37.02        83.84         0.10        30.44        16.67        39.52 
TCGA-64-5815 TCGA-67-3770 TCGA-67-3771 TCGA-67-3772 TCGA-67-3773 TCGA-67-3774 
        7.33         0.99         1.97         0.59         2.04         0.59 
TCGA-67-6215 TCGA-67-6216 TCGA-67-6217 TCGA-71-6725 TCGA-73-4658 TCGA-73-4659 
        0.89         0.69        13.87         2.01        52.57        23.38 
TCGA-73-4662 TCGA-73-4666 TCGA-73-4668 TCGA-73-4670 TCGA-73-4675 TCGA-73-4676 
       29.95        20.28        15.35         0.46         1.32         4.01 
TCGA-73-4677 TCGA-91-6828 TCGA-91-6829 TCGA-91-6831 TCGA-91-6835 TCGA-91-6836 
        1.25         1.22        41.33         1.28         1.15         0.36 

  PSG3 MUTATED PSG3 WILD-TYPE 
          0.46           0.07 
  PSG3 MUTATED PSG3 WILD-TYPE 
         47.05          85.32 
  PSG3 MUTATED PSG3 WILD-TYPE 
         14.93          13.51 
[1] "0.5 - 47.0 (14.9)" "0.1 - 85.3 (13.5)"
    TCGA-05-4249     TCGA-05-4250     TCGA-05-4382     TCGA-05-4384 
"PSG3 WILD-TYPE" "PSG3 WILD-TYPE" "PSG3 WILD-TYPE" "PSG3 WILD-TYPE" 
    TCGA-05-4390     TCGA-05-4396     TCGA-05-4397     TCGA-05-4398 
"PSG3 WILD-TYPE" "PSG3 WILD-TYPE" "PSG3 WILD-TYPE"   "PSG3 MUTATED" 
    TCGA-05-4402     TCGA-05-4405     TCGA-05-4415     TCGA-05-4417 
"PSG3 WILD-TYPE" "PSG3 WILD-TYPE" "PSG3 WILD-TYPE"   "PSG3 MUTATED" 
    TCGA-05-4418     TCGA-05-4420     TCGA-05-4424     TCGA-05-4426 
"PSG3 WILD-TYPE" "PSG3 WILD-TYPE" "PSG3 WILD-TYPE" "PSG3 WILD-TYPE" 
    TCGA-05-4427     TCGA-05-4430     TCGA-05-4432     TCGA-05-4433 
"PSG3 WILD-TYPE" "PSG3 WILD-TYPE" "PSG3 WILD-TYPE" "PSG3 WILD-TYPE" 
    TCGA-05-4434     TCGA-05-5420     TCGA-05-5423     TCGA-05-5425 
"PSG3 WILD-TYPE" "PSG3 WILD-TYPE" "PSG3 WILD-TYPE" "PSG3 WILD-TYPE" 
    TCGA-05-5429     TCGA-05-5715     TCGA-35-3615     TCGA-35-4122 
"PSG3 WILD-TYPE" "PSG3 WILD-TYPE"   "PSG3 MUTATED" "PSG3 WILD-TYPE" 
    TCGA-35-4123     TCGA-35-5375     TCGA-38-4625     TCGA-38-4626 
"PSG3 WILD-TYPE" "PSG3 WILD-TYPE" "PSG3 WILD-TYPE" "PSG3 WILD-TYPE" 
    TCGA-38-4627     TCGA-38-4628     TCGA-38-4629     TCGA-38-4630 
"PSG3 WILD-TYPE" "PSG3 WILD-TYPE" "PSG3 WILD-TYPE" "PSG3 WILD-TYPE" 
    TCGA-38-4631     TCGA-38-4632     TCGA-38-6178     TCGA-44-2655 
"PSG3 WILD-TYPE" "PSG3 WILD-TYPE" "PSG3 WILD-TYPE" "PSG3 WILD-TYPE" 
    TCGA-44-2656     TCGA-44-2657     TCGA-44-2659     TCGA-44-2661 
"PSG3 WILD-TYPE" "PSG3 WILD-TYPE" "PSG3 WILD-TYPE" "PSG3 WILD-TYPE" 
    TCGA-44-2662     TCGA-44-2665     TCGA-44-2666     TCGA-44-2668 
"PSG3 WILD-TYPE" "PSG3 WILD-TYPE" "PSG3 WILD-TYPE" "PSG3 WILD-TYPE" 
    TCGA-44-3396     TCGA-44-3398     TCGA-44-3918     TCGA-44-3919 
"PSG3 WILD-TYPE" "PSG3 WILD-TYPE" "PSG3 WILD-TYPE" "PSG3 WILD-TYPE" 
    TCGA-44-4112     TCGA-44-5643     TCGA-44-5645     TCGA-44-6144 
"PSG3 WILD-TYPE" "PSG3 WILD-TYPE" "PSG3 WILD-TYPE" "PSG3 WILD-TYPE" 
    TCGA-44-6145     TCGA-44-6146     TCGA-44-6147     TCGA-44-6148 
"PSG3 WILD-TYPE" "PSG3 WILD-TYPE" "PSG3 WILD-TYPE" "PSG3 WILD-TYPE" 
    TCGA-44-6774     TCGA-44-6775     TCGA-44-6776     TCGA-44-6777 
"PSG3 WILD-TYPE" "PSG3 WILD-TYPE" "PSG3 WILD-TYPE" "PSG3 WILD-TYPE" 
    TCGA-44-6778     TCGA-44-6779     TCGA-49-4486     TCGA-49-4487 
"PSG3 WILD-TYPE" "PSG3 WILD-TYPE" "PSG3 WILD-TYPE" "PSG3 WILD-TYPE" 
    TCGA-49-4488     TCGA-49-4490     TCGA-49-4494     TCGA-49-4501 
"PSG3 WILD-TYPE" "PSG3 WILD-TYPE"   "PSG3 MUTATED" "PSG3 WILD-TYPE" 
    TCGA-49-4505     TCGA-49-4506     TCGA-49-4507     TCGA-49-4510 
"PSG3 WILD-TYPE" "PSG3 WILD-TYPE" "PSG3 WILD-TYPE" "PSG3 WILD-TYPE" 
    TCGA-49-4512     TCGA-49-4514     TCGA-49-6742     TCGA-49-6743 
"PSG3 WILD-TYPE" "PSG3 WILD-TYPE" "PSG3 WILD-TYPE" "PSG3 WILD-TYPE" 
    TCGA-49-6744     TCGA-49-6745     TCGA-50-5044     TCGA-50-5045 
"PSG3 WILD-TYPE" "PSG3 WILD-TYPE" "PSG3 WILD-TYPE" "PSG3 WILD-TYPE" 
    TCGA-50-5049     TCGA-50-5051     TCGA-50-5055     TCGA-50-5066 
"PSG3 WILD-TYPE" "PSG3 WILD-TYPE" "PSG3 WILD-TYPE" "PSG3 WILD-TYPE" 
    TCGA-50-5068     TCGA-50-5072     TCGA-50-5930     TCGA-50-5931 
"PSG3 WILD-TYPE" "PSG3 WILD-TYPE" "PSG3 WILD-TYPE" "PSG3 WILD-TYPE" 
    TCGA-50-5932     TCGA-50-5933     TCGA-50-5935     TCGA-50-5936 
"PSG3 WILD-TYPE" "PSG3 WILD-TYPE" "PSG3 WILD-TYPE" "PSG3 WILD-TYPE" 
    TCGA-50-5939     TCGA-50-5941     TCGA-50-5942     TCGA-50-5944 
"PSG3 WILD-TYPE" "PSG3 WILD-TYPE" "PSG3 WILD-TYPE" "PSG3 WILD-TYPE" 
    TCGA-50-5946     TCGA-50-6590     TCGA-50-6591     TCGA-50-6592 
"PSG3 WILD-TYPE" "PSG3 WILD-TYPE" "PSG3 WILD-TYPE" "PSG3 WILD-TYPE" 
    TCGA-50-6593     TCGA-50-6594     TCGA-50-6595     TCGA-50-6597 
"PSG3 WILD-TYPE" "PSG3 WILD-TYPE" "PSG3 WILD-TYPE" "PSG3 WILD-TYPE" 
    TCGA-55-1592     TCGA-55-1594     TCGA-55-1595     TCGA-55-1596 
"PSG3 WILD-TYPE" "PSG3 WILD-TYPE" "PSG3 WILD-TYPE" "PSG3 WILD-TYPE" 
    TCGA-55-5899     TCGA-55-6543     TCGA-55-6642     TCGA-55-6712 
"PSG3 WILD-TYPE" "PSG3 WILD-TYPE" "PSG3 WILD-TYPE"   "PSG3 MUTATED" 
    TCGA-64-1676     TCGA-64-1677     TCGA-64-1678     TCGA-64-1680 
"PSG3 WILD-TYPE" "PSG3 WILD-TYPE" "PSG3 WILD-TYPE" "PSG3 WILD-TYPE" 
    TCGA-64-5774     TCGA-64-5775     TCGA-64-5778     TCGA-64-5779 
"PSG3 WILD-TYPE" "PSG3 WILD-TYPE" "PSG3 WILD-TYPE" "PSG3 WILD-TYPE" 
    TCGA-64-5781     TCGA-64-5815     TCGA-67-3770     TCGA-67-3771 
"PSG3 WILD-TYPE" "PSG3 WILD-TYPE" "PSG3 WILD-TYPE" "PSG3 WILD-TYPE" 
    TCGA-67-3772     TCGA-67-3773     TCGA-67-3774     TCGA-67-6215 
"PSG3 WILD-TYPE" "PSG3 WILD-TYPE" "PSG3 WILD-TYPE" "PSG3 WILD-TYPE" 
    TCGA-67-6216     TCGA-67-6217     TCGA-71-6725     TCGA-73-4658 
"PSG3 WILD-TYPE" "PSG3 WILD-TYPE" "PSG3 WILD-TYPE" "PSG3 WILD-TYPE" 
    TCGA-73-4659     TCGA-73-4662     TCGA-73-4666     TCGA-73-4668 
"PSG3 WILD-TYPE" "PSG3 WILD-TYPE" "PSG3 WILD-TYPE" "PSG3 WILD-TYPE" 
    TCGA-73-4670     TCGA-73-4675     TCGA-73-4676     TCGA-73-4677 
"PSG3 WILD-TYPE" "PSG3 WILD-TYPE" "PSG3 WILD-TYPE" "PSG3 WILD-TYPE" 
    TCGA-91-6828     TCGA-91-6829     TCGA-91-6831     TCGA-91-6835 
"PSG3 WILD-TYPE" "PSG3 WILD-TYPE" "PSG3 WILD-TYPE" "PSG3 WILD-TYPE" 
    TCGA-91-6836 
"PSG3 WILD-TYPE" 
    TCGA-05-4249     TCGA-05-4250     TCGA-05-4382     TCGA-05-4384 
"PSG3 WILD-TYPE" "PSG3 WILD-TYPE" "PSG3 WILD-TYPE" "PSG3 WILD-TYPE" 
    TCGA-05-4390     TCGA-05-4396     TCGA-05-4397     TCGA-05-4398 
"PSG3 WILD-TYPE" "PSG3 WILD-TYPE" "PSG3 WILD-TYPE"   "PSG3 MUTATED" 
    TCGA-05-4402     TCGA-05-4405     TCGA-05-4415     TCGA-05-4417 
"PSG3 WILD-TYPE" "PSG3 WILD-TYPE" "PSG3 WILD-TYPE"   "PSG3 MUTATED" 
    TCGA-05-4418     TCGA-05-4420     TCGA-05-4424     TCGA-05-4426 
"PSG3 WILD-TYPE" "PSG3 WILD-TYPE" "PSG3 WILD-TYPE" "PSG3 WILD-TYPE" 
    TCGA-05-4427     TCGA-05-4430     TCGA-05-4432     TCGA-05-4433 
"PSG3 WILD-TYPE" "PSG3 WILD-TYPE" "PSG3 WILD-TYPE" "PSG3 WILD-TYPE" 
    TCGA-05-4434     TCGA-05-5420     TCGA-05-5423     TCGA-05-5425 
"PSG3 WILD-TYPE" "PSG3 WILD-TYPE" "PSG3 WILD-TYPE" "PSG3 WILD-TYPE" 
    TCGA-05-5429     TCGA-05-5715     TCGA-35-3615     TCGA-35-4122 
"PSG3 WILD-TYPE" "PSG3 WILD-TYPE"   "PSG3 MUTATED" "PSG3 WILD-TYPE" 
    TCGA-35-4123     TCGA-35-5375     TCGA-38-4625     TCGA-38-4626 
"PSG3 WILD-TYPE" "PSG3 WILD-TYPE" "PSG3 WILD-TYPE" "PSG3 WILD-TYPE" 
    TCGA-38-4627     TCGA-38-4628     TCGA-38-4629     TCGA-38-4630 
"PSG3 WILD-TYPE" "PSG3 WILD-TYPE" "PSG3 WILD-TYPE" "PSG3 WILD-TYPE" 
    TCGA-38-4631     TCGA-38-4632     TCGA-38-6178     TCGA-44-2655 
"PSG3 WILD-TYPE" "PSG3 WILD-TYPE" "PSG3 WILD-TYPE" "PSG3 WILD-TYPE" 
    TCGA-44-2656     TCGA-44-2657     TCGA-44-2659     TCGA-44-2661 
"PSG3 WILD-TYPE" "PSG3 WILD-TYPE" "PSG3 WILD-TYPE" "PSG3 WILD-TYPE" 
    TCGA-44-2662     TCGA-44-2665     TCGA-44-2666     TCGA-44-2668 
"PSG3 WILD-TYPE" "PSG3 WILD-TYPE" "PSG3 WILD-TYPE" "PSG3 WILD-TYPE" 
    TCGA-44-3396     TCGA-44-3398     TCGA-44-3918     TCGA-44-3919 
"PSG3 WILD-TYPE" "PSG3 WILD-TYPE" "PSG3 WILD-TYPE" "PSG3 WILD-TYPE" 
    TCGA-44-4112     TCGA-44-5643     TCGA-44-5645     TCGA-44-6144 
"PSG3 WILD-TYPE" "PSG3 WILD-TYPE" "PSG3 WILD-TYPE" "PSG3 WILD-TYPE" 
    TCGA-44-6145     TCGA-44-6146     TCGA-44-6147     TCGA-44-6148 
"PSG3 WILD-TYPE" "PSG3 WILD-TYPE" "PSG3 WILD-TYPE" "PSG3 WILD-TYPE" 
    TCGA-44-6774     TCGA-44-6775     TCGA-44-6776     TCGA-44-6777 
"PSG3 WILD-TYPE" "PSG3 WILD-TYPE" "PSG3 WILD-TYPE" "PSG3 WILD-TYPE" 
    TCGA-44-6778     TCGA-44-6779     TCGA-49-4486     TCGA-49-4487 
"PSG3 WILD-TYPE" "PSG3 WILD-TYPE" "PSG3 WILD-TYPE" "PSG3 WILD-TYPE" 
    TCGA-49-4488     TCGA-49-4490     TCGA-49-4494     TCGA-49-4501 
"PSG3 WILD-TYPE" "PSG3 WILD-TYPE"   "PSG3 MUTATED" "PSG3 WILD-TYPE" 
    TCGA-49-4505     TCGA-49-4506     TCGA-49-4507     TCGA-49-4510 
"PSG3 WILD-TYPE" "PSG3 WILD-TYPE" "PSG3 WILD-TYPE" "PSG3 WILD-TYPE" 
    TCGA-49-4512     TCGA-49-4514     TCGA-49-6742     TCGA-49-6743 
"PSG3 WILD-TYPE" "PSG3 WILD-TYPE" "PSG3 WILD-TYPE" "PSG3 WILD-TYPE" 
    TCGA-49-6744     TCGA-49-6745     TCGA-50-5044     TCGA-50-5045 
"PSG3 WILD-TYPE" "PSG3 WILD-TYPE" "PSG3 WILD-TYPE" "PSG3 WILD-TYPE" 
    TCGA-50-5049     TCGA-50-5051     TCGA-50-5055     TCGA-50-5066 
"PSG3 WILD-TYPE" "PSG3 WILD-TYPE" "PSG3 WILD-TYPE" "PSG3 WILD-TYPE" 
    TCGA-50-5068     TCGA-50-5072     TCGA-50-5930     TCGA-50-5931 
"PSG3 WILD-TYPE" "PSG3 WILD-TYPE" "PSG3 WILD-TYPE" "PSG3 WILD-TYPE" 
    TCGA-50-5932     TCGA-50-5933     TCGA-50-5935     TCGA-50-5936 
"PSG3 WILD-TYPE" "PSG3 WILD-TYPE" "PSG3 WILD-TYPE" "PSG3 WILD-TYPE" 
    TCGA-50-5939     TCGA-50-5941     TCGA-50-5942     TCGA-50-5944 
"PSG3 WILD-TYPE" "PSG3 WILD-TYPE" "PSG3 WILD-TYPE" "PSG3 WILD-TYPE" 
    TCGA-50-5946     TCGA-50-6590     TCGA-50-6591     TCGA-50-6592 
"PSG3 WILD-TYPE" "PSG3 WILD-TYPE" "PSG3 WILD-TYPE" "PSG3 WILD-TYPE" 
    TCGA-50-6593     TCGA-50-6594     TCGA-50-6595     TCGA-50-6597 
"PSG3 WILD-TYPE" "PSG3 WILD-TYPE" "PSG3 WILD-TYPE" "PSG3 WILD-TYPE" 
    TCGA-55-1592     TCGA-55-1594     TCGA-55-1595     TCGA-55-1596 
"PSG3 WILD-TYPE" "PSG3 WILD-TYPE" "PSG3 WILD-TYPE" "PSG3 WILD-TYPE" 
    TCGA-55-5899     TCGA-55-6543     TCGA-55-6642     TCGA-55-6712 
"PSG3 WILD-TYPE" "PSG3 WILD-TYPE" "PSG3 WILD-TYPE"   "PSG3 MUTATED" 
    TCGA-64-1676     TCGA-64-1677     TCGA-64-1678     TCGA-64-1680 
"PSG3 WILD-TYPE" "PSG3 WILD-TYPE" "PSG3 WILD-TYPE" "PSG3 WILD-TYPE" 
    TCGA-64-5774     TCGA-64-5775     TCGA-64-5778     TCGA-64-5779 
"PSG3 WILD-TYPE" "PSG3 WILD-TYPE" "PSG3 WILD-TYPE" "PSG3 WILD-TYPE" 
    TCGA-64-5781     TCGA-64-5815     TCGA-67-3770     TCGA-67-3771 
"PSG3 WILD-TYPE" "PSG3 WILD-TYPE" "PSG3 WILD-TYPE" "PSG3 WILD-TYPE" 
    TCGA-67-3772     TCGA-67-3773     TCGA-67-3774     TCGA-67-6215 
"PSG3 WILD-TYPE" "PSG3 WILD-TYPE" "PSG3 WILD-TYPE" "PSG3 WILD-TYPE" 
    TCGA-67-6216     TCGA-67-6217     TCGA-71-6725     TCGA-73-4658 
"PSG3 WILD-TYPE" "PSG3 WILD-TYPE" "PSG3 WILD-TYPE" "PSG3 WILD-TYPE" 
    TCGA-73-4659     TCGA-73-4662     TCGA-73-4666     TCGA-73-4668 
"PSG3 WILD-TYPE" "PSG3 WILD-TYPE" "PSG3 WILD-TYPE" "PSG3 WILD-TYPE" 
    TCGA-73-4670     TCGA-73-4675     TCGA-73-4676     TCGA-73-4677 
"PSG3 WILD-TYPE" "PSG3 WILD-TYPE" "PSG3 WILD-TYPE" "PSG3 WILD-TYPE" 
    TCGA-91-6828     TCGA-91-6829     TCGA-91-6831     TCGA-91-6835 
"PSG3 WILD-TYPE" "PSG3 WILD-TYPE" "PSG3 WILD-TYPE" "PSG3 WILD-TYPE" 
    TCGA-91-6836 
"PSG3 WILD-TYPE" 
    TCGA-05-4249     TCGA-05-4250     TCGA-05-4382     TCGA-05-4384 
"PSG3 WILD-TYPE" "PSG3 WILD-TYPE" "PSG3 WILD-TYPE" "PSG3 WILD-TYPE" 
    TCGA-05-4390     TCGA-05-4396     TCGA-05-4397     TCGA-05-4398 
"PSG3 WILD-TYPE" "PSG3 WILD-TYPE" "PSG3 WILD-TYPE"   "PSG3 MUTATED" 
    TCGA-05-4402     TCGA-05-4405     TCGA-05-4415     TCGA-05-4417 
"PSG3 WILD-TYPE" "PSG3 WILD-TYPE" "PSG3 WILD-TYPE"   "PSG3 MUTATED" 
    TCGA-05-4418     TCGA-05-4420     TCGA-05-4424     TCGA-05-4426 
"PSG3 WILD-TYPE" "PSG3 WILD-TYPE" "PSG3 WILD-TYPE" "PSG3 WILD-TYPE" 
    TCGA-05-4427     TCGA-05-4430     TCGA-05-4432     TCGA-05-4433 
"PSG3 WILD-TYPE" "PSG3 WILD-TYPE" "PSG3 WILD-TYPE" "PSG3 WILD-TYPE" 
    TCGA-05-4434     TCGA-05-5420     TCGA-05-5423     TCGA-05-5425 
"PSG3 WILD-TYPE" "PSG3 WILD-TYPE" "PSG3 WILD-TYPE" "PSG3 WILD-TYPE" 
    TCGA-05-5429     TCGA-05-5715     TCGA-35-3615     TCGA-35-4122 
"PSG3 WILD-TYPE" "PSG3 WILD-TYPE"   "PSG3 MUTATED" "PSG3 WILD-TYPE" 
    TCGA-35-4123     TCGA-35-5375     TCGA-38-4625     TCGA-38-4626 
"PSG3 WILD-TYPE" "PSG3 WILD-TYPE" "PSG3 WILD-TYPE" "PSG3 WILD-TYPE" 
    TCGA-38-4627     TCGA-38-4628     TCGA-38-4629     TCGA-38-4630 
"PSG3 WILD-TYPE" "PSG3 WILD-TYPE" "PSG3 WILD-TYPE" "PSG3 WILD-TYPE" 
    TCGA-38-4631     TCGA-38-4632     TCGA-38-6178     TCGA-44-2655 
"PSG3 WILD-TYPE" "PSG3 WILD-TYPE" "PSG3 WILD-TYPE" "PSG3 WILD-TYPE" 
    TCGA-44-2656     TCGA-44-2657     TCGA-44-2659     TCGA-44-2661 
"PSG3 WILD-TYPE" "PSG3 WILD-TYPE" "PSG3 WILD-TYPE" "PSG3 WILD-TYPE" 
    TCGA-44-2662     TCGA-44-2665     TCGA-44-2666     TCGA-44-2668 
"PSG3 WILD-TYPE" "PSG3 WILD-TYPE" "PSG3 WILD-TYPE" "PSG3 WILD-TYPE" 
    TCGA-44-3396     TCGA-44-3398     TCGA-44-3918     TCGA-44-3919 
"PSG3 WILD-TYPE" "PSG3 WILD-TYPE" "PSG3 WILD-TYPE" "PSG3 WILD-TYPE" 
    TCGA-44-4112     TCGA-44-5643     TCGA-44-5645     TCGA-44-6144 
"PSG3 WILD-TYPE" "PSG3 WILD-TYPE" "PSG3 WILD-TYPE" "PSG3 WILD-TYPE" 
    TCGA-44-6145     TCGA-44-6146     TCGA-44-6147     TCGA-44-6148 
"PSG3 WILD-TYPE" "PSG3 WILD-TYPE" "PSG3 WILD-TYPE" "PSG3 WILD-TYPE" 
    TCGA-44-6774     TCGA-44-6775     TCGA-44-6776     TCGA-44-6777 
"PSG3 WILD-TYPE" "PSG3 WILD-TYPE" "PSG3 WILD-TYPE" "PSG3 WILD-TYPE" 
    TCGA-44-6778     TCGA-44-6779     TCGA-49-4486     TCGA-49-4487 
"PSG3 WILD-TYPE" "PSG3 WILD-TYPE" "PSG3 WILD-TYPE" "PSG3 WILD-TYPE" 
    TCGA-49-4488     TCGA-49-4490     TCGA-49-4494     TCGA-49-4501 
"PSG3 WILD-TYPE" "PSG3 WILD-TYPE"   "PSG3 MUTATED" "PSG3 WILD-TYPE" 
    TCGA-49-4505     TCGA-49-4506     TCGA-49-4507     TCGA-49-4510 
"PSG3 WILD-TYPE" "PSG3 WILD-TYPE" "PSG3 WILD-TYPE" "PSG3 WILD-TYPE" 
    TCGA-49-4512     TCGA-49-4514     TCGA-49-6742     TCGA-49-6743 
"PSG3 WILD-TYPE" "PSG3 WILD-TYPE" "PSG3 WILD-TYPE" "PSG3 WILD-TYPE" 
    TCGA-49-6744     TCGA-49-6745     TCGA-50-5044     TCGA-50-5045 
"PSG3 WILD-TYPE" "PSG3 WILD-TYPE" "PSG3 WILD-TYPE" "PSG3 WILD-TYPE" 
    TCGA-50-5049     TCGA-50-5051     TCGA-50-5055     TCGA-50-5066 
"PSG3 WILD-TYPE" "PSG3 WILD-TYPE" "PSG3 WILD-TYPE" "PSG3 WILD-TYPE" 
    TCGA-50-5068     TCGA-50-5072     TCGA-50-5930     TCGA-50-5931 
"PSG3 WILD-TYPE" "PSG3 WILD-TYPE" "PSG3 WILD-TYPE" "PSG3 WILD-TYPE" 
    TCGA-50-5932     TCGA-50-5933     TCGA-50-5935     TCGA-50-5936 
"PSG3 WILD-TYPE" "PSG3 WILD-TYPE" "PSG3 WILD-TYPE" "PSG3 WILD-TYPE" 
    TCGA-50-5939     TCGA-50-5941     TCGA-50-5942     TCGA-50-5944 
"PSG3 WILD-TYPE" "PSG3 WILD-TYPE" "PSG3 WILD-TYPE" "PSG3 WILD-TYPE" 
    TCGA-50-5946     TCGA-50-6590     TCGA-50-6591     TCGA-50-6592 
"PSG3 WILD-TYPE" "PSG3 WILD-TYPE" "PSG3 WILD-TYPE" "PSG3 WILD-TYPE" 
    TCGA-50-6593     TCGA-50-6594     TCGA-50-6595     TCGA-50-6597 
"PSG3 WILD-TYPE" "PSG3 WILD-TYPE" "PSG3 WILD-TYPE" "PSG3 WILD-TYPE" 
    TCGA-55-1592     TCGA-55-1594     TCGA-55-1595     TCGA-55-1596 
"PSG3 WILD-TYPE" "PSG3 WILD-TYPE" "PSG3 WILD-TYPE" "PSG3 WILD-TYPE" 
    TCGA-55-5899     TCGA-55-6543     TCGA-55-6642     TCGA-55-6712 
"PSG3 WILD-TYPE" "PSG3 WILD-TYPE" "PSG3 WILD-TYPE"   "PSG3 MUTATED" 
    TCGA-64-1676     TCGA-64-1677     TCGA-64-1678     TCGA-64-1680 
"PSG3 WILD-TYPE" "PSG3 WILD-TYPE" "PSG3 WILD-TYPE" "PSG3 WILD-TYPE" 
    TCGA-64-5774     TCGA-64-5775     TCGA-64-5778     TCGA-64-5779 
"PSG3 WILD-TYPE" "PSG3 WILD-TYPE" "PSG3 WILD-TYPE" "PSG3 WILD-TYPE" 
    TCGA-64-5781     TCGA-64-5815     TCGA-67-3770     TCGA-67-3771 
"PSG3 WILD-TYPE" "PSG3 WILD-TYPE" "PSG3 WILD-TYPE" "PSG3 WILD-TYPE" 
    TCGA-67-3772     TCGA-67-3773     TCGA-67-3774     TCGA-67-6215 
"PSG3 WILD-TYPE" "PSG3 WILD-TYPE" "PSG3 WILD-TYPE" "PSG3 WILD-TYPE" 
    TCGA-67-6216     TCGA-67-6217     TCGA-71-6725     TCGA-73-4658 
"PSG3 WILD-TYPE" "PSG3 WILD-TYPE" "PSG3 WILD-TYPE" "PSG3 WILD-TYPE" 
    TCGA-73-4659     TCGA-73-4662     TCGA-73-4666     TCGA-73-4668 
"PSG3 WILD-TYPE" "PSG3 WILD-TYPE" "PSG3 WILD-TYPE" "PSG3 WILD-TYPE" 
    TCGA-73-4670     TCGA-73-4675     TCGA-73-4676     TCGA-73-4677 
"PSG3 WILD-TYPE" "PSG3 WILD-TYPE" "PSG3 WILD-TYPE" "PSG3 WILD-TYPE" 
    TCGA-91-6828     TCGA-91-6829     TCGA-91-6831     TCGA-91-6835 
"PSG3 WILD-TYPE" "PSG3 WILD-TYPE" "PSG3 WILD-TYPE" "PSG3 WILD-TYPE" 
    TCGA-91-6836 
"PSG3 WILD-TYPE" 
[1] "hr=" "1.8"
D293V2, continuous
D293V3, binary
[1] "tbl2"
                cls
clus             [,1] [,2]
  PSG3 MUTATED      2    3
  PSG3 WILD-TYPE   91   76
        clus
vv       PSG3 MUTATED PSG3 WILD-TYPE
  FEMALE            2             91
  MALE              3             76
D293V4, continuous
D293V5, multiclass
D293V6, multiclass
    clus
vv   PSG3 MUTATED PSG3 WILD-TYPE
  T1            0             41
  T2            3            105
  T3            1             13
  T4            1              7
D293V7, multiclass
       clus
vv      PSG3 MUTATED PSG3 WILD-TYPE
  N0               2             93
  N1               1             36
  N2+N3            2             33
D293V8, multiclass
    clus
vv   PSG3 MUTATED PSG3 WILD-TYPE
  M0            4            133
  M1            0              9
  MX            1             21
D293V9, multiclass
     clus
vv    PSG3 MUTATED PSG3 WILD-TYPE
  I              2             86
  II             0             33
  III            2             37
  IV             0              9
D293V10, binary
[1] "tbl2"
                cls
clus             [,1] [,2]
  PSG3 MUTATED      0    5
  PSG3 WILD-TYPE   16  151
     clus
vv    PSG3 MUTATED PSG3 WILD-TYPE
  NO             0             16
  YES            5            151
D293V11, continuous
D293V12, continuous
D293V13, multiclass
                                             clus
vv                                            PSG3 MUTATED PSG3 WILD-TYPE
  CURRENT REFORMED SMOKER FOR < OR = 15 YEARS            2             60
  CURRENT REFORMED SMOKER FOR > 15 YEARS                 1             45
  CURRENT SMOKER                                         1             27
  LIFELONG NON-SMOKER                                    1             23
D293V14, continuous

Clustering(294) Variable = DEFB116 MUTATION ANALYSIS
D294V1, survival
                   sevent
clus2                0  1
  DEFB116 MUTATED    1  2
  DEFB116 WILD-TYPE 98 48
  DEFB116 MUTATED DEFB116 WILD-TYPE 
                3               146 
  DEFB116 MUTATED DEFB116 WILD-TYPE 
                2                48 
$`DEFB116 MUTATED`
TCGA-05-4396 TCGA-35-3615 TCGA-49-4488 
        9.96         0.46        28.57 

$`DEFB116 WILD-TYPE`
TCGA-05-4249 TCGA-05-4250 TCGA-05-4382 TCGA-05-4384 TCGA-05-4390 TCGA-05-4397 
       38.07         3.98        19.92        14.01        37.02        24.03 
TCGA-05-4398 TCGA-05-4402 TCGA-05-4405 TCGA-05-4415 TCGA-05-4417 TCGA-05-4418 
       47.05         8.02        20.05         2.96        14.93         8.98 
TCGA-05-4420 TCGA-05-4424 TCGA-05-4426 TCGA-05-4427 TCGA-05-4430 TCGA-05-4432 
       29.95        30.02        26.01        26.01        25.02        25.02 
TCGA-05-4433 TCGA-05-4434 TCGA-05-5420 TCGA-05-5423 TCGA-05-5425 TCGA-05-5429 
       24.00        15.02         1.02         4.96         2.96         0.99 
TCGA-05-5715 TCGA-35-4122 TCGA-35-4123 TCGA-35-5375 TCGA-38-4625 TCGA-38-4626 
        2.04         7.36         5.95         8.68        47.61        85.32 
TCGA-38-4627 TCGA-38-4628 TCGA-38-4629 TCGA-38-4630 TCGA-38-4631 TCGA-38-4632 
       37.71        49.02        28.37        35.28        11.64        44.61 
TCGA-38-6178 TCGA-44-2655 TCGA-44-2656 TCGA-44-2657 TCGA-44-2659 TCGA-44-2661 
        5.19        18.87        19.10        13.15        17.39         3.39 
TCGA-44-2662 TCGA-44-2665 TCGA-44-2666 TCGA-44-2668 TCGA-44-3396 TCGA-44-3398 
       15.78        13.15         3.19         8.09        10.22         8.32 
TCGA-44-3918 TCGA-44-3919 TCGA-44-4112 TCGA-44-5643 TCGA-44-5645 TCGA-44-6144 
        6.44         6.21         4.60         3.48         6.84         0.30 
TCGA-44-6145 TCGA-44-6146 TCGA-44-6147 TCGA-44-6148 TCGA-44-6774 TCGA-44-6775 
        3.35         9.93         7.76         3.12         5.42         2.70 
TCGA-44-6776 TCGA-44-6777 TCGA-44-6778 TCGA-44-6779 TCGA-49-4486 TCGA-49-4487 
       63.72        32.45        36.49        16.41        76.21        28.11 
TCGA-49-4490 TCGA-49-4494 TCGA-49-4501 TCGA-49-4505 TCGA-49-4506 TCGA-49-4507 
       12.66        35.54        46.72        14.07        32.84         8.81 
TCGA-49-4510 TCGA-49-4512 TCGA-49-4514 TCGA-49-6742 TCGA-49-6743 TCGA-49-6744 
       29.46        29.75        43.20        15.02        12.13        12.99 
TCGA-49-6745 TCGA-50-5044 TCGA-50-5045 TCGA-50-5049 TCGA-50-5051 TCGA-50-5055 
        4.93        20.48        71.47        48.82        14.96        25.81 
TCGA-50-5066 TCGA-50-5068 TCGA-50-5072 TCGA-50-5930 TCGA-50-5931 TCGA-50-5932 
        9.76        49.28         8.05         9.27         8.78        35.87 
TCGA-50-5933 TCGA-50-5935 TCGA-50-5936 TCGA-50-5939 TCGA-50-5941 TCGA-50-5942 
       77.88        21.47         8.45        15.12         9.37         4.44 
TCGA-50-5944 TCGA-50-5946 TCGA-50-6590 TCGA-50-6591 TCGA-50-6592 TCGA-50-6593 
       12.26        11.47        42.31         3.88        25.51        11.05 
TCGA-50-6594 TCGA-50-6595 TCGA-50-6597 TCGA-55-1592 TCGA-55-1594 TCGA-55-1595 
       12.16         6.21        33.37        23.05        38.73        48.62 
TCGA-55-1596 TCGA-55-5899 TCGA-55-6543 TCGA-55-6642 TCGA-55-6712 TCGA-64-1676 
       45.17         2.86         0.07        32.61         0.79        56.81 
TCGA-64-1677 TCGA-64-1678 TCGA-64-1680 TCGA-64-5774 TCGA-64-5775 TCGA-64-5778 
       20.65        39.09        37.02        83.84         0.10        30.44 
TCGA-64-5779 TCGA-64-5781 TCGA-64-5815 TCGA-67-3770 TCGA-67-3771 TCGA-67-3772 
       16.67        39.52         7.33         0.99         1.97         0.59 
TCGA-67-3773 TCGA-67-3774 TCGA-67-6215 TCGA-67-6216 TCGA-67-6217 TCGA-71-6725 
        2.04         0.59         0.89         0.69        13.87         2.01 
TCGA-73-4658 TCGA-73-4659 TCGA-73-4662 TCGA-73-4666 TCGA-73-4668 TCGA-73-4670 
       52.57        23.38        29.95        20.28        15.35         0.46 
TCGA-73-4675 TCGA-73-4676 TCGA-73-4677 TCGA-91-6828 TCGA-91-6829 TCGA-91-6831 
        1.32         4.01         1.25         1.22        41.33         1.28 
TCGA-91-6835 TCGA-91-6836 
        1.15         0.36 

  DEFB116 MUTATED DEFB116 WILD-TYPE 
             0.46              0.07 
  DEFB116 MUTATED DEFB116 WILD-TYPE 
            28.57             85.32 
  DEFB116 MUTATED DEFB116 WILD-TYPE 
             9.96             13.94 
[1] "0.5 - 28.6 (10.0)" "0.1 - 85.3 (13.9)"
       TCGA-05-4249        TCGA-05-4250        TCGA-05-4382        TCGA-05-4384 
"DEFB116 WILD-TYPE" "DEFB116 WILD-TYPE" "DEFB116 WILD-TYPE" "DEFB116 WILD-TYPE" 
       TCGA-05-4390        TCGA-05-4396        TCGA-05-4397        TCGA-05-4398 
"DEFB116 WILD-TYPE"   "DEFB116 MUTATED" "DEFB116 WILD-TYPE" "DEFB116 WILD-TYPE" 
       TCGA-05-4402        TCGA-05-4405        TCGA-05-4415        TCGA-05-4417 
"DEFB116 WILD-TYPE" "DEFB116 WILD-TYPE" "DEFB116 WILD-TYPE" "DEFB116 WILD-TYPE" 
       TCGA-05-4418        TCGA-05-4420        TCGA-05-4424        TCGA-05-4426 
"DEFB116 WILD-TYPE" "DEFB116 WILD-TYPE" "DEFB116 WILD-TYPE" "DEFB116 WILD-TYPE" 
       TCGA-05-4427        TCGA-05-4430        TCGA-05-4432        TCGA-05-4433 
"DEFB116 WILD-TYPE" "DEFB116 WILD-TYPE" "DEFB116 WILD-TYPE" "DEFB116 WILD-TYPE" 
       TCGA-05-4434        TCGA-05-5420        TCGA-05-5423        TCGA-05-5425 
"DEFB116 WILD-TYPE" "DEFB116 WILD-TYPE" "DEFB116 WILD-TYPE" "DEFB116 WILD-TYPE" 
       TCGA-05-5429        TCGA-05-5715        TCGA-35-3615        TCGA-35-4122 
"DEFB116 WILD-TYPE" "DEFB116 WILD-TYPE"   "DEFB116 MUTATED" "DEFB116 WILD-TYPE" 
       TCGA-35-4123        TCGA-35-5375        TCGA-38-4625        TCGA-38-4626 
"DEFB116 WILD-TYPE" "DEFB116 WILD-TYPE" "DEFB116 WILD-TYPE" "DEFB116 WILD-TYPE" 
       TCGA-38-4627        TCGA-38-4628        TCGA-38-4629        TCGA-38-4630 
"DEFB116 WILD-TYPE" "DEFB116 WILD-TYPE" "DEFB116 WILD-TYPE" "DEFB116 WILD-TYPE" 
       TCGA-38-4631        TCGA-38-4632        TCGA-38-6178        TCGA-44-2655 
"DEFB116 WILD-TYPE" "DEFB116 WILD-TYPE" "DEFB116 WILD-TYPE" "DEFB116 WILD-TYPE" 
       TCGA-44-2656        TCGA-44-2657        TCGA-44-2659        TCGA-44-2661 
"DEFB116 WILD-TYPE" "DEFB116 WILD-TYPE" "DEFB116 WILD-TYPE" "DEFB116 WILD-TYPE" 
       TCGA-44-2662        TCGA-44-2665        TCGA-44-2666        TCGA-44-2668 
"DEFB116 WILD-TYPE" "DEFB116 WILD-TYPE" "DEFB116 WILD-TYPE" "DEFB116 WILD-TYPE" 
       TCGA-44-3396        TCGA-44-3398        TCGA-44-3918        TCGA-44-3919 
"DEFB116 WILD-TYPE" "DEFB116 WILD-TYPE" "DEFB116 WILD-TYPE" "DEFB116 WILD-TYPE" 
       TCGA-44-4112        TCGA-44-5643        TCGA-44-5645        TCGA-44-6144 
"DEFB116 WILD-TYPE" "DEFB116 WILD-TYPE" "DEFB116 WILD-TYPE" "DEFB116 WILD-TYPE" 
       TCGA-44-6145        TCGA-44-6146        TCGA-44-6147        TCGA-44-6148 
"DEFB116 WILD-TYPE" "DEFB116 WILD-TYPE" "DEFB116 WILD-TYPE" "DEFB116 WILD-TYPE" 
       TCGA-44-6774        TCGA-44-6775        TCGA-44-6776        TCGA-44-6777 
"DEFB116 WILD-TYPE" "DEFB116 WILD-TYPE" "DEFB116 WILD-TYPE" "DEFB116 WILD-TYPE" 
       TCGA-44-6778        TCGA-44-6779        TCGA-49-4486        TCGA-49-4487 
"DEFB116 WILD-TYPE" "DEFB116 WILD-TYPE" "DEFB116 WILD-TYPE" "DEFB116 WILD-TYPE" 
       TCGA-49-4488        TCGA-49-4490        TCGA-49-4494        TCGA-49-4501 
  "DEFB116 MUTATED" "DEFB116 WILD-TYPE" "DEFB116 WILD-TYPE" "DEFB116 WILD-TYPE" 
       TCGA-49-4505        TCGA-49-4506        TCGA-49-4507        TCGA-49-4510 
"DEFB116 WILD-TYPE" "DEFB116 WILD-TYPE" "DEFB116 WILD-TYPE" "DEFB116 WILD-TYPE" 
       TCGA-49-4512        TCGA-49-4514        TCGA-49-6742        TCGA-49-6743 
"DEFB116 WILD-TYPE" "DEFB116 WILD-TYPE" "DEFB116 WILD-TYPE" "DEFB116 WILD-TYPE" 
       TCGA-49-6744        TCGA-49-6745        TCGA-50-5044        TCGA-50-5045 
"DEFB116 WILD-TYPE" "DEFB116 WILD-TYPE" "DEFB116 WILD-TYPE" "DEFB116 WILD-TYPE" 
       TCGA-50-5049        TCGA-50-5051        TCGA-50-5055        TCGA-50-5066 
"DEFB116 WILD-TYPE" "DEFB116 WILD-TYPE" "DEFB116 WILD-TYPE" "DEFB116 WILD-TYPE" 
       TCGA-50-5068        TCGA-50-5072        TCGA-50-5930        TCGA-50-5931 
"DEFB116 WILD-TYPE" "DEFB116 WILD-TYPE" "DEFB116 WILD-TYPE" "DEFB116 WILD-TYPE" 
       TCGA-50-5932        TCGA-50-5933        TCGA-50-5935        TCGA-50-5936 
"DEFB116 WILD-TYPE" "DEFB116 WILD-TYPE" "DEFB116 WILD-TYPE" "DEFB116 WILD-TYPE" 
       TCGA-50-5939        TCGA-50-5941        TCGA-50-5942        TCGA-50-5944 
"DEFB116 WILD-TYPE" "DEFB116 WILD-TYPE" "DEFB116 WILD-TYPE" "DEFB116 WILD-TYPE" 
       TCGA-50-5946        TCGA-50-6590        TCGA-50-6591        TCGA-50-6592 
"DEFB116 WILD-TYPE" "DEFB116 WILD-TYPE" "DEFB116 WILD-TYPE" "DEFB116 WILD-TYPE" 
       TCGA-50-6593        TCGA-50-6594        TCGA-50-6595        TCGA-50-6597 
"DEFB116 WILD-TYPE" "DEFB116 WILD-TYPE" "DEFB116 WILD-TYPE" "DEFB116 WILD-TYPE" 
       TCGA-55-1592        TCGA-55-1594        TCGA-55-1595        TCGA-55-1596 
"DEFB116 WILD-TYPE" "DEFB116 WILD-TYPE" "DEFB116 WILD-TYPE" "DEFB116 WILD-TYPE" 
       TCGA-55-5899        TCGA-55-6543        TCGA-55-6642        TCGA-55-6712 
"DEFB116 WILD-TYPE" "DEFB116 WILD-TYPE" "DEFB116 WILD-TYPE" "DEFB116 WILD-TYPE" 
       TCGA-64-1676        TCGA-64-1677        TCGA-64-1678        TCGA-64-1680 
"DEFB116 WILD-TYPE" "DEFB116 WILD-TYPE" "DEFB116 WILD-TYPE" "DEFB116 WILD-TYPE" 
       TCGA-64-5774        TCGA-64-5775        TCGA-64-5778        TCGA-64-5779 
"DEFB116 WILD-TYPE" "DEFB116 WILD-TYPE" "DEFB116 WILD-TYPE" "DEFB116 WILD-TYPE" 
       TCGA-64-5781        TCGA-64-5815        TCGA-67-3770        TCGA-67-3771 
"DEFB116 WILD-TYPE" "DEFB116 WILD-TYPE" "DEFB116 WILD-TYPE" "DEFB116 WILD-TYPE" 
       TCGA-67-3772        TCGA-67-3773        TCGA-67-3774        TCGA-67-6215 
"DEFB116 WILD-TYPE" "DEFB116 WILD-TYPE" "DEFB116 WILD-TYPE" "DEFB116 WILD-TYPE" 
       TCGA-67-6216        TCGA-67-6217        TCGA-71-6725        TCGA-73-4658 
"DEFB116 WILD-TYPE" "DEFB116 WILD-TYPE" "DEFB116 WILD-TYPE" "DEFB116 WILD-TYPE" 
       TCGA-73-4659        TCGA-73-4662        TCGA-73-4666        TCGA-73-4668 
"DEFB116 WILD-TYPE" "DEFB116 WILD-TYPE" "DEFB116 WILD-TYPE" "DEFB116 WILD-TYPE" 
       TCGA-73-4670        TCGA-73-4675        TCGA-73-4676        TCGA-73-4677 
"DEFB116 WILD-TYPE" "DEFB116 WILD-TYPE" "DEFB116 WILD-TYPE" "DEFB116 WILD-TYPE" 
       TCGA-91-6828        TCGA-91-6829        TCGA-91-6831        TCGA-91-6835 
"DEFB116 WILD-TYPE" "DEFB116 WILD-TYPE" "DEFB116 WILD-TYPE" "DEFB116 WILD-TYPE" 
       TCGA-91-6836 
"DEFB116 WILD-TYPE" 
       TCGA-05-4249        TCGA-05-4250        TCGA-05-4382        TCGA-05-4384 
"DEFB116 WILD-TYPE" "DEFB116 WILD-TYPE" "DEFB116 WILD-TYPE" "DEFB116 WILD-TYPE" 
       TCGA-05-4390        TCGA-05-4396        TCGA-05-4397        TCGA-05-4398 
"DEFB116 WILD-TYPE"   "DEFB116 MUTATED" "DEFB116 WILD-TYPE" "DEFB116 WILD-TYPE" 
       TCGA-05-4402        TCGA-05-4405        TCGA-05-4415        TCGA-05-4417 
"DEFB116 WILD-TYPE" "DEFB116 WILD-TYPE" "DEFB116 WILD-TYPE" "DEFB116 WILD-TYPE" 
       TCGA-05-4418        TCGA-05-4420        TCGA-05-4424        TCGA-05-4426 
"DEFB116 WILD-TYPE" "DEFB116 WILD-TYPE" "DEFB116 WILD-TYPE" "DEFB116 WILD-TYPE" 
       TCGA-05-4427        TCGA-05-4430        TCGA-05-4432        TCGA-05-4433 
"DEFB116 WILD-TYPE" "DEFB116 WILD-TYPE" "DEFB116 WILD-TYPE" "DEFB116 WILD-TYPE" 
       TCGA-05-4434        TCGA-05-5420        TCGA-05-5423        TCGA-05-5425 
"DEFB116 WILD-TYPE" "DEFB116 WILD-TYPE" "DEFB116 WILD-TYPE" "DEFB116 WILD-TYPE" 
       TCGA-05-5429        TCGA-05-5715        TCGA-35-3615        TCGA-35-4122 
"DEFB116 WILD-TYPE" "DEFB116 WILD-TYPE"   "DEFB116 MUTATED" "DEFB116 WILD-TYPE" 
       TCGA-35-4123        TCGA-35-5375        TCGA-38-4625        TCGA-38-4626 
"DEFB116 WILD-TYPE" "DEFB116 WILD-TYPE" "DEFB116 WILD-TYPE" "DEFB116 WILD-TYPE" 
       TCGA-38-4627        TCGA-38-4628        TCGA-38-4629        TCGA-38-4630 
"DEFB116 WILD-TYPE" "DEFB116 WILD-TYPE" "DEFB116 WILD-TYPE" "DEFB116 WILD-TYPE" 
       TCGA-38-4631        TCGA-38-4632        TCGA-38-6178        TCGA-44-2655 
"DEFB116 WILD-TYPE" "DEFB116 WILD-TYPE" "DEFB116 WILD-TYPE" "DEFB116 WILD-TYPE" 
       TCGA-44-2656        TCGA-44-2657        TCGA-44-2659        TCGA-44-2661 
"DEFB116 WILD-TYPE" "DEFB116 WILD-TYPE" "DEFB116 WILD-TYPE" "DEFB116 WILD-TYPE" 
       TCGA-44-2662        TCGA-44-2665        TCGA-44-2666        TCGA-44-2668 
"DEFB116 WILD-TYPE" "DEFB116 WILD-TYPE" "DEFB116 WILD-TYPE" "DEFB116 WILD-TYPE" 
       TCGA-44-3396        TCGA-44-3398        TCGA-44-3918        TCGA-44-3919 
"DEFB116 WILD-TYPE" "DEFB116 WILD-TYPE" "DEFB116 WILD-TYPE" "DEFB116 WILD-TYPE" 
       TCGA-44-4112        TCGA-44-5643        TCGA-44-5645        TCGA-44-6144 
"DEFB116 WILD-TYPE" "DEFB116 WILD-TYPE" "DEFB116 WILD-TYPE" "DEFB116 WILD-TYPE" 
       TCGA-44-6145        TCGA-44-6146        TCGA-44-6147        TCGA-44-6148 
"DEFB116 WILD-TYPE" "DEFB116 WILD-TYPE" "DEFB116 WILD-TYPE" "DEFB116 WILD-TYPE" 
       TCGA-44-6774        TCGA-44-6775        TCGA-44-6776        TCGA-44-6777 
"DEFB116 WILD-TYPE" "DEFB116 WILD-TYPE" "DEFB116 WILD-TYPE" "DEFB116 WILD-TYPE" 
       TCGA-44-6778        TCGA-44-6779        TCGA-49-4486        TCGA-49-4487 
"DEFB116 WILD-TYPE" "DEFB116 WILD-TYPE" "DEFB116 WILD-TYPE" "DEFB116 WILD-TYPE" 
       TCGA-49-4488        TCGA-49-4490        TCGA-49-4494        TCGA-49-4501 
  "DEFB116 MUTATED" "DEFB116 WILD-TYPE" "DEFB116 WILD-TYPE" "DEFB116 WILD-TYPE" 
       TCGA-49-4505        TCGA-49-4506        TCGA-49-4507        TCGA-49-4510 
"DEFB116 WILD-TYPE" "DEFB116 WILD-TYPE" "DEFB116 WILD-TYPE" "DEFB116 WILD-TYPE" 
       TCGA-49-4512        TCGA-49-4514        TCGA-49-6742        TCGA-49-6743 
"DEFB116 WILD-TYPE" "DEFB116 WILD-TYPE" "DEFB116 WILD-TYPE" "DEFB116 WILD-TYPE" 
       TCGA-49-6744        TCGA-49-6745        TCGA-50-5044        TCGA-50-5045 
"DEFB116 WILD-TYPE" "DEFB116 WILD-TYPE" "DEFB116 WILD-TYPE" "DEFB116 WILD-TYPE" 
       TCGA-50-5049        TCGA-50-5051        TCGA-50-5055        TCGA-50-5066 
"DEFB116 WILD-TYPE" "DEFB116 WILD-TYPE" "DEFB116 WILD-TYPE" "DEFB116 WILD-TYPE" 
       TCGA-50-5068        TCGA-50-5072        TCGA-50-5930        TCGA-50-5931 
"DEFB116 WILD-TYPE" "DEFB116 WILD-TYPE" "DEFB116 WILD-TYPE" "DEFB116 WILD-TYPE" 
       TCGA-50-5932        TCGA-50-5933        TCGA-50-5935        TCGA-50-5936 
"DEFB116 WILD-TYPE" "DEFB116 WILD-TYPE" "DEFB116 WILD-TYPE" "DEFB116 WILD-TYPE" 
       TCGA-50-5939        TCGA-50-5941        TCGA-50-5942        TCGA-50-5944 
"DEFB116 WILD-TYPE" "DEFB116 WILD-TYPE" "DEFB116 WILD-TYPE" "DEFB116 WILD-TYPE" 
       TCGA-50-5946        TCGA-50-6590        TCGA-50-6591        TCGA-50-6592 
"DEFB116 WILD-TYPE" "DEFB116 WILD-TYPE" "DEFB116 WILD-TYPE" "DEFB116 WILD-TYPE" 
       TCGA-50-6593        TCGA-50-6594        TCGA-50-6595        TCGA-50-6597 
"DEFB116 WILD-TYPE" "DEFB116 WILD-TYPE" "DEFB116 WILD-TYPE" "DEFB116 WILD-TYPE" 
       TCGA-55-1592        TCGA-55-1594        TCGA-55-1595        TCGA-55-1596 
"DEFB116 WILD-TYPE" "DEFB116 WILD-TYPE" "DEFB116 WILD-TYPE" "DEFB116 WILD-TYPE" 
       TCGA-55-5899        TCGA-55-6543        TCGA-55-6642        TCGA-55-6712 
"DEFB116 WILD-TYPE" "DEFB116 WILD-TYPE" "DEFB116 WILD-TYPE" "DEFB116 WILD-TYPE" 
       TCGA-64-1676        TCGA-64-1677        TCGA-64-1678        TCGA-64-1680 
"DEFB116 WILD-TYPE" "DEFB116 WILD-TYPE" "DEFB116 WILD-TYPE" "DEFB116 WILD-TYPE" 
       TCGA-64-5774        TCGA-64-5775        TCGA-64-5778        TCGA-64-5779 
"DEFB116 WILD-TYPE" "DEFB116 WILD-TYPE" "DEFB116 WILD-TYPE" "DEFB116 WILD-TYPE" 
       TCGA-64-5781        TCGA-64-5815        TCGA-67-3770        TCGA-67-3771 
"DEFB116 WILD-TYPE" "DEFB116 WILD-TYPE" "DEFB116 WILD-TYPE" "DEFB116 WILD-TYPE" 
       TCGA-67-3772        TCGA-67-3773        TCGA-67-3774        TCGA-67-6215 
"DEFB116 WILD-TYPE" "DEFB116 WILD-TYPE" "DEFB116 WILD-TYPE" "DEFB116 WILD-TYPE" 
       TCGA-67-6216        TCGA-67-6217        TCGA-71-6725        TCGA-73-4658 
"DEFB116 WILD-TYPE" "DEFB116 WILD-TYPE" "DEFB116 WILD-TYPE" "DEFB116 WILD-TYPE" 
       TCGA-73-4659        TCGA-73-4662        TCGA-73-4666        TCGA-73-4668 
"DEFB116 WILD-TYPE" "DEFB116 WILD-TYPE" "DEFB116 WILD-TYPE" "DEFB116 WILD-TYPE" 
       TCGA-73-4670        TCGA-73-4675        TCGA-73-4676        TCGA-73-4677 
"DEFB116 WILD-TYPE" "DEFB116 WILD-TYPE" "DEFB116 WILD-TYPE" "DEFB116 WILD-TYPE" 
       TCGA-91-6828        TCGA-91-6829        TCGA-91-6831        TCGA-91-6835 
"DEFB116 WILD-TYPE" "DEFB116 WILD-TYPE" "DEFB116 WILD-TYPE" "DEFB116 WILD-TYPE" 
       TCGA-91-6836 
"DEFB116 WILD-TYPE" 
       TCGA-05-4249        TCGA-05-4250        TCGA-05-4382        TCGA-05-4384 
"DEFB116 WILD-TYPE" "DEFB116 WILD-TYPE" "DEFB116 WILD-TYPE" "DEFB116 WILD-TYPE" 
       TCGA-05-4390        TCGA-05-4396        TCGA-05-4397        TCGA-05-4398 
"DEFB116 WILD-TYPE"   "DEFB116 MUTATED" "DEFB116 WILD-TYPE" "DEFB116 WILD-TYPE" 
       TCGA-05-4402        TCGA-05-4405        TCGA-05-4415        TCGA-05-4417 
"DEFB116 WILD-TYPE" "DEFB116 WILD-TYPE" "DEFB116 WILD-TYPE" "DEFB116 WILD-TYPE" 
       TCGA-05-4418        TCGA-05-4420        TCGA-05-4424        TCGA-05-4426 
"DEFB116 WILD-TYPE" "DEFB116 WILD-TYPE" "DEFB116 WILD-TYPE" "DEFB116 WILD-TYPE" 
       TCGA-05-4427        TCGA-05-4430        TCGA-05-4432        TCGA-05-4433 
"DEFB116 WILD-TYPE" "DEFB116 WILD-TYPE" "DEFB116 WILD-TYPE" "DEFB116 WILD-TYPE" 
       TCGA-05-4434        TCGA-05-5420        TCGA-05-5423        TCGA-05-5425 
"DEFB116 WILD-TYPE" "DEFB116 WILD-TYPE" "DEFB116 WILD-TYPE" "DEFB116 WILD-TYPE" 
       TCGA-05-5429        TCGA-05-5715        TCGA-35-3615        TCGA-35-4122 
"DEFB116 WILD-TYPE" "DEFB116 WILD-TYPE"   "DEFB116 MUTATED" "DEFB116 WILD-TYPE" 
       TCGA-35-4123        TCGA-35-5375        TCGA-38-4625        TCGA-38-4626 
"DEFB116 WILD-TYPE" "DEFB116 WILD-TYPE" "DEFB116 WILD-TYPE" "DEFB116 WILD-TYPE" 
       TCGA-38-4627        TCGA-38-4628        TCGA-38-4629        TCGA-38-4630 
"DEFB116 WILD-TYPE" "DEFB116 WILD-TYPE" "DEFB116 WILD-TYPE" "DEFB116 WILD-TYPE" 
       TCGA-38-4631        TCGA-38-4632        TCGA-38-6178        TCGA-44-2655 
"DEFB116 WILD-TYPE" "DEFB116 WILD-TYPE" "DEFB116 WILD-TYPE" "DEFB116 WILD-TYPE" 
       TCGA-44-2656        TCGA-44-2657        TCGA-44-2659        TCGA-44-2661 
"DEFB116 WILD-TYPE" "DEFB116 WILD-TYPE" "DEFB116 WILD-TYPE" "DEFB116 WILD-TYPE" 
       TCGA-44-2662        TCGA-44-2665        TCGA-44-2666        TCGA-44-2668 
"DEFB116 WILD-TYPE" "DEFB116 WILD-TYPE" "DEFB116 WILD-TYPE" "DEFB116 WILD-TYPE" 
       TCGA-44-3396        TCGA-44-3398        TCGA-44-3918        TCGA-44-3919 
"DEFB116 WILD-TYPE" "DEFB116 WILD-TYPE" "DEFB116 WILD-TYPE" "DEFB116 WILD-TYPE" 
       TCGA-44-4112        TCGA-44-5643        TCGA-44-5645        TCGA-44-6144 
"DEFB116 WILD-TYPE" "DEFB116 WILD-TYPE" "DEFB116 WILD-TYPE" "DEFB116 WILD-TYPE" 
       TCGA-44-6145        TCGA-44-6146        TCGA-44-6147        TCGA-44-6148 
"DEFB116 WILD-TYPE" "DEFB116 WILD-TYPE" "DEFB116 WILD-TYPE" "DEFB116 WILD-TYPE" 
       TCGA-44-6774        TCGA-44-6775        TCGA-44-6776        TCGA-44-6777 
"DEFB116 WILD-TYPE" "DEFB116 WILD-TYPE" "DEFB116 WILD-TYPE" "DEFB116 WILD-TYPE" 
       TCGA-44-6778        TCGA-44-6779        TCGA-49-4486        TCGA-49-4487 
"DEFB116 WILD-TYPE" "DEFB116 WILD-TYPE" "DEFB116 WILD-TYPE" "DEFB116 WILD-TYPE" 
       TCGA-49-4488        TCGA-49-4490        TCGA-49-4494        TCGA-49-4501 
  "DEFB116 MUTATED" "DEFB116 WILD-TYPE" "DEFB116 WILD-TYPE" "DEFB116 WILD-TYPE" 
       TCGA-49-4505        TCGA-49-4506        TCGA-49-4507        TCGA-49-4510 
"DEFB116 WILD-TYPE" "DEFB116 WILD-TYPE" "DEFB116 WILD-TYPE" "DEFB116 WILD-TYPE" 
       TCGA-49-4512        TCGA-49-4514        TCGA-49-6742        TCGA-49-6743 
"DEFB116 WILD-TYPE" "DEFB116 WILD-TYPE" "DEFB116 WILD-TYPE" "DEFB116 WILD-TYPE" 
       TCGA-49-6744        TCGA-49-6745        TCGA-50-5044        TCGA-50-5045 
"DEFB116 WILD-TYPE" "DEFB116 WILD-TYPE" "DEFB116 WILD-TYPE" "DEFB116 WILD-TYPE" 
       TCGA-50-5049        TCGA-50-5051        TCGA-50-5055        TCGA-50-5066 
"DEFB116 WILD-TYPE" "DEFB116 WILD-TYPE" "DEFB116 WILD-TYPE" "DEFB116 WILD-TYPE" 
       TCGA-50-5068        TCGA-50-5072        TCGA-50-5930        TCGA-50-5931 
"DEFB116 WILD-TYPE" "DEFB116 WILD-TYPE" "DEFB116 WILD-TYPE" "DEFB116 WILD-TYPE" 
       TCGA-50-5932        TCGA-50-5933        TCGA-50-5935        TCGA-50-5936 
"DEFB116 WILD-TYPE" "DEFB116 WILD-TYPE" "DEFB116 WILD-TYPE" "DEFB116 WILD-TYPE" 
       TCGA-50-5939        TCGA-50-5941        TCGA-50-5942        TCGA-50-5944 
"DEFB116 WILD-TYPE" "DEFB116 WILD-TYPE" "DEFB116 WILD-TYPE" "DEFB116 WILD-TYPE" 
       TCGA-50-5946        TCGA-50-6590        TCGA-50-6591        TCGA-50-6592 
"DEFB116 WILD-TYPE" "DEFB116 WILD-TYPE" "DEFB116 WILD-TYPE" "DEFB116 WILD-TYPE" 
       TCGA-50-6593        TCGA-50-6594        TCGA-50-6595        TCGA-50-6597 
"DEFB116 WILD-TYPE" "DEFB116 WILD-TYPE" "DEFB116 WILD-TYPE" "DEFB116 WILD-TYPE" 
       TCGA-55-1592        TCGA-55-1594        TCGA-55-1595        TCGA-55-1596 
"DEFB116 WILD-TYPE" "DEFB116 WILD-TYPE" "DEFB116 WILD-TYPE" "DEFB116 WILD-TYPE" 
       TCGA-55-5899        TCGA-55-6543        TCGA-55-6642        TCGA-55-6712 
"DEFB116 WILD-TYPE" "DEFB116 WILD-TYPE" "DEFB116 WILD-TYPE" "DEFB116 WILD-TYPE" 
       TCGA-64-1676        TCGA-64-1677        TCGA-64-1678        TCGA-64-1680 
"DEFB116 WILD-TYPE" "DEFB116 WILD-TYPE" "DEFB116 WILD-TYPE" "DEFB116 WILD-TYPE" 
       TCGA-64-5774        TCGA-64-5775        TCGA-64-5778        TCGA-64-5779 
"DEFB116 WILD-TYPE" "DEFB116 WILD-TYPE" "DEFB116 WILD-TYPE" "DEFB116 WILD-TYPE" 
       TCGA-64-5781        TCGA-64-5815        TCGA-67-3770        TCGA-67-3771 
"DEFB116 WILD-TYPE" "DEFB116 WILD-TYPE" "DEFB116 WILD-TYPE" "DEFB116 WILD-TYPE" 
       TCGA-67-3772        TCGA-67-3773        TCGA-67-3774        TCGA-67-6215 
"DEFB116 WILD-TYPE" "DEFB116 WILD-TYPE" "DEFB116 WILD-TYPE" "DEFB116 WILD-TYPE" 
       TCGA-67-6216        TCGA-67-6217        TCGA-71-6725        TCGA-73-4658 
"DEFB116 WILD-TYPE" "DEFB116 WILD-TYPE" "DEFB116 WILD-TYPE" "DEFB116 WILD-TYPE" 
       TCGA-73-4659        TCGA-73-4662        TCGA-73-4666        TCGA-73-4668 
"DEFB116 WILD-TYPE" "DEFB116 WILD-TYPE" "DEFB116 WILD-TYPE" "DEFB116 WILD-TYPE" 
       TCGA-73-4670        TCGA-73-4675        TCGA-73-4676        TCGA-73-4677 
"DEFB116 WILD-TYPE" "DEFB116 WILD-TYPE" "DEFB116 WILD-TYPE" "DEFB116 WILD-TYPE" 
       TCGA-91-6828        TCGA-91-6829        TCGA-91-6831        TCGA-91-6835 
"DEFB116 WILD-TYPE" "DEFB116 WILD-TYPE" "DEFB116 WILD-TYPE" "DEFB116 WILD-TYPE" 
       TCGA-91-6836 
"DEFB116 WILD-TYPE" 
[1] "hr=" "3.6"
D294V2, continuous
D294V3, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  DEFB116 MUTATED      1    2
  DEFB116 WILD-TYPE   92   77
        clus
vv       DEFB116 MUTATED DEFB116 WILD-TYPE
  FEMALE               1                92
  MALE                 2                77
D294V4, continuous
D294V5, multiclass
D294V6, multiclass
    clus
vv   DEFB116 MUTATED DEFB116 WILD-TYPE
  T1               1                40
  T2               1               107
  T3               0                14
  T4               1                 7
D294V7, multiclass
       clus
vv      DEFB116 MUTATED DEFB116 WILD-TYPE
  N0                  2                93
  N1                  1                36
  N2+N3               0                35
D294V8, multiclass
    clus
vv   DEFB116 MUTATED DEFB116 WILD-TYPE
  M0               2               135
  M1               0                 9
  MX               1                21
D294V9, multiclass
     clus
vv    DEFB116 MUTATED DEFB116 WILD-TYPE
  I                 2                86
  II                0                33
  III               1                38
  IV                0                 9
D294V10, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  DEFB116 MUTATED      0    3
  DEFB116 WILD-TYPE   16  153
     clus
vv    DEFB116 MUTATED DEFB116 WILD-TYPE
  NO                0                16
  YES               3               153
D294V11, continuous
[1] "Remove cluster labels:" "DEFB116 MUTATED"       
clus
  DEFB116 MUTATED DEFB116 WILD-TYPE 
                1               113 
       TCGA-05-4244        TCGA-05-4249        TCGA-05-4250        TCGA-05-4382 
"DEFB116 WILD-TYPE" "DEFB116 WILD-TYPE" "DEFB116 WILD-TYPE" "DEFB116 WILD-TYPE" 
       TCGA-05-4384        TCGA-05-4389        TCGA-05-4390        TCGA-05-4395 
"DEFB116 WILD-TYPE" "DEFB116 WILD-TYPE" "DEFB116 WILD-TYPE" "DEFB116 WILD-TYPE" 
       TCGA-05-4397        TCGA-05-4398        TCGA-05-4402        TCGA-05-4405 
"DEFB116 WILD-TYPE" "DEFB116 WILD-TYPE" "DEFB116 WILD-TYPE" "DEFB116 WILD-TYPE" 
       TCGA-05-4410        TCGA-05-4415        TCGA-05-4417        TCGA-05-4418 
"DEFB116 WILD-TYPE" "DEFB116 WILD-TYPE" "DEFB116 WILD-TYPE" "DEFB116 WILD-TYPE" 
       TCGA-05-4420        TCGA-05-4422        TCGA-05-4424        TCGA-05-4425 
"DEFB116 WILD-TYPE" "DEFB116 WILD-TYPE" "DEFB116 WILD-TYPE" "DEFB116 WILD-TYPE" 
       TCGA-05-4426        TCGA-05-4427        TCGA-05-4430        TCGA-05-4432 
"DEFB116 WILD-TYPE" "DEFB116 WILD-TYPE" "DEFB116 WILD-TYPE" "DEFB116 WILD-TYPE" 
       TCGA-05-4433        TCGA-05-4434        TCGA-05-5420        TCGA-05-5423 
"DEFB116 WILD-TYPE" "DEFB116 WILD-TYPE" "DEFB116 WILD-TYPE" "DEFB116 WILD-TYPE" 
       TCGA-05-5425        TCGA-05-5428        TCGA-35-4122        TCGA-35-4123 
"DEFB116 WILD-TYPE" "DEFB116 WILD-TYPE" "DEFB116 WILD-TYPE" "DEFB116 WILD-TYPE" 
       TCGA-35-5375        TCGA-38-4625        TCGA-38-4626        TCGA-38-4629 
"DEFB116 WILD-TYPE" "DEFB116 WILD-TYPE" "DEFB116 WILD-TYPE" "DEFB116 WILD-TYPE" 
       TCGA-38-4631        TCGA-38-4632        TCGA-44-2655        TCGA-44-2656 
"DEFB116 WILD-TYPE" "DEFB116 WILD-TYPE" "DEFB116 WILD-TYPE" "DEFB116 WILD-TYPE" 
       TCGA-44-2657        TCGA-44-2659        TCGA-44-2662        TCGA-44-2666 
"DEFB116 WILD-TYPE" "DEFB116 WILD-TYPE" "DEFB116 WILD-TYPE" "DEFB116 WILD-TYPE" 
       TCGA-44-2668        TCGA-44-3396        TCGA-44-3398        TCGA-44-3918 
"DEFB116 WILD-TYPE" "DEFB116 WILD-TYPE" "DEFB116 WILD-TYPE" "DEFB116 WILD-TYPE" 
       TCGA-44-4112        TCGA-44-5643        TCGA-44-5645        TCGA-44-6144 
"DEFB116 WILD-TYPE" "DEFB116 WILD-TYPE" "DEFB116 WILD-TYPE" "DEFB116 WILD-TYPE" 
       TCGA-44-6145        TCGA-44-6146        TCGA-44-6148        TCGA-44-6774 
"DEFB116 WILD-TYPE" "DEFB116 WILD-TYPE" "DEFB116 WILD-TYPE" "DEFB116 WILD-TYPE" 
       TCGA-44-6775        TCGA-44-6776        TCGA-44-6777        TCGA-44-6778 
"DEFB116 WILD-TYPE" "DEFB116 WILD-TYPE" "DEFB116 WILD-TYPE" "DEFB116 WILD-TYPE" 
       TCGA-44-6779        TCGA-49-4486        TCGA-49-4487        TCGA-49-4490 
"DEFB116 WILD-TYPE" "DEFB116 WILD-TYPE" "DEFB116 WILD-TYPE" "DEFB116 WILD-TYPE" 
       TCGA-49-4494        TCGA-49-4505        TCGA-49-4506        TCGA-49-4507 
"DEFB116 WILD-TYPE" "DEFB116 WILD-TYPE" "DEFB116 WILD-TYPE" "DEFB116 WILD-TYPE" 
       TCGA-49-4510        TCGA-49-4514        TCGA-49-6742        TCGA-49-6743 
"DEFB116 WILD-TYPE" "DEFB116 WILD-TYPE" "DEFB116 WILD-TYPE" "DEFB116 WILD-TYPE" 
       TCGA-49-6744        TCGA-49-6745        TCGA-49-6767        TCGA-50-5051 
"DEFB116 WILD-TYPE" "DEFB116 WILD-TYPE" "DEFB116 WILD-TYPE" "DEFB116 WILD-TYPE" 
       TCGA-50-5072        TCGA-50-5931        TCGA-50-5939        TCGA-50-5941 
"DEFB116 WILD-TYPE" "DEFB116 WILD-TYPE" "DEFB116 WILD-TYPE" "DEFB116 WILD-TYPE" 
       TCGA-50-5942        TCGA-50-6590        TCGA-55-1596        TCGA-55-6543 
"DEFB116 WILD-TYPE" "DEFB116 WILD-TYPE" "DEFB116 WILD-TYPE" "DEFB116 WILD-TYPE" 
       TCGA-64-1676        TCGA-64-1677        TCGA-64-1678        TCGA-64-1680 
"DEFB116 WILD-TYPE" "DEFB116 WILD-TYPE" "DEFB116 WILD-TYPE" "DEFB116 WILD-TYPE" 
       TCGA-64-5774        TCGA-64-5775        TCGA-64-5778        TCGA-64-5779 
"DEFB116 WILD-TYPE" "DEFB116 WILD-TYPE" "DEFB116 WILD-TYPE" "DEFB116 WILD-TYPE" 
       TCGA-64-5781        TCGA-64-5815        TCGA-73-4658        TCGA-73-4659 
"DEFB116 WILD-TYPE" "DEFB116 WILD-TYPE" "DEFB116 WILD-TYPE" "DEFB116 WILD-TYPE" 
       TCGA-73-4662        TCGA-73-4666        TCGA-73-4668        TCGA-73-4670 
"DEFB116 WILD-TYPE" "DEFB116 WILD-TYPE" "DEFB116 WILD-TYPE" "DEFB116 WILD-TYPE" 
       TCGA-73-4675        TCGA-73-4676        TCGA-75-5122        TCGA-75-5125 
"DEFB116 WILD-TYPE" "DEFB116 WILD-TYPE" "DEFB116 WILD-TYPE" "DEFB116 WILD-TYPE" 
       TCGA-75-5126        TCGA-75-6203        TCGA-75-6206        TCGA-75-6207 
"DEFB116 WILD-TYPE" "DEFB116 WILD-TYPE" "DEFB116 WILD-TYPE" "DEFB116 WILD-TYPE" 
       TCGA-75-6211        TCGA-80-5611        TCGA-91-6829        TCGA-91-6835 
"DEFB116 WILD-TYPE" "DEFB116 WILD-TYPE" "DEFB116 WILD-TYPE" "DEFB116 WILD-TYPE" 
       TCGA-91-6836 
"DEFB116 WILD-TYPE" 
D294V12, continuous
[1] "Remove cluster labels:" "DEFB116 MUTATED"       
clus
  DEFB116 MUTATED DEFB116 WILD-TYPE 
                2                80 
       TCGA-05-4384        TCGA-05-4390        TCGA-05-4403        TCGA-05-4405 
"DEFB116 WILD-TYPE" "DEFB116 WILD-TYPE" "DEFB116 WILD-TYPE" "DEFB116 WILD-TYPE" 
       TCGA-05-4410        TCGA-05-4415        TCGA-05-4417        TCGA-05-4424 
"DEFB116 WILD-TYPE" "DEFB116 WILD-TYPE" "DEFB116 WILD-TYPE" "DEFB116 WILD-TYPE" 
       TCGA-05-4427        TCGA-05-4433        TCGA-05-5420        TCGA-05-5423 
"DEFB116 WILD-TYPE" "DEFB116 WILD-TYPE" "DEFB116 WILD-TYPE" "DEFB116 WILD-TYPE" 
       TCGA-05-5425        TCGA-05-5428        TCGA-35-4122        TCGA-35-4123 
"DEFB116 WILD-TYPE" "DEFB116 WILD-TYPE" "DEFB116 WILD-TYPE" "DEFB116 WILD-TYPE" 
       TCGA-35-5375        TCGA-38-4629        TCGA-38-4632        TCGA-44-2655 
"DEFB116 WILD-TYPE" "DEFB116 WILD-TYPE" "DEFB116 WILD-TYPE" "DEFB116 WILD-TYPE" 
       TCGA-44-2656        TCGA-44-2657        TCGA-44-2659        TCGA-44-2662 
"DEFB116 WILD-TYPE" "DEFB116 WILD-TYPE" "DEFB116 WILD-TYPE" "DEFB116 WILD-TYPE" 
       TCGA-44-2668        TCGA-44-3398        TCGA-44-3918        TCGA-44-4112 
"DEFB116 WILD-TYPE" "DEFB116 WILD-TYPE" "DEFB116 WILD-TYPE" "DEFB116 WILD-TYPE" 
       TCGA-44-5645        TCGA-44-6145        TCGA-44-6146        TCGA-44-6147 
"DEFB116 WILD-TYPE" "DEFB116 WILD-TYPE" "DEFB116 WILD-TYPE" "DEFB116 WILD-TYPE" 
       TCGA-44-6148        TCGA-44-6775        TCGA-44-6776        TCGA-44-6777 
"DEFB116 WILD-TYPE" "DEFB116 WILD-TYPE" "DEFB116 WILD-TYPE" "DEFB116 WILD-TYPE" 
       TCGA-44-6778        TCGA-44-6779        TCGA-49-4486        TCGA-49-4494 
"DEFB116 WILD-TYPE" "DEFB116 WILD-TYPE" "DEFB116 WILD-TYPE" "DEFB116 WILD-TYPE" 
       TCGA-49-4505        TCGA-49-4507        TCGA-50-5051        TCGA-50-5072 
"DEFB116 WILD-TYPE" "DEFB116 WILD-TYPE" "DEFB116 WILD-TYPE" "DEFB116 WILD-TYPE" 
       TCGA-50-5939        TCGA-50-5942        TCGA-50-5946        TCGA-50-6590 
"DEFB116 WILD-TYPE" "DEFB116 WILD-TYPE" "DEFB116 WILD-TYPE" "DEFB116 WILD-TYPE" 
       TCGA-50-6594        TCGA-50-6595        TCGA-55-1592        TCGA-55-1595 
"DEFB116 WILD-TYPE" "DEFB116 WILD-TYPE" "DEFB116 WILD-TYPE" "DEFB116 WILD-TYPE" 
       TCGA-55-6543        TCGA-55-6712        TCGA-64-1678        TCGA-64-1680 
"DEFB116 WILD-TYPE" "DEFB116 WILD-TYPE" "DEFB116 WILD-TYPE" "DEFB116 WILD-TYPE" 
       TCGA-64-5774        TCGA-64-5778        TCGA-64-5779        TCGA-64-5781 
"DEFB116 WILD-TYPE" "DEFB116 WILD-TYPE" "DEFB116 WILD-TYPE" "DEFB116 WILD-TYPE" 
       TCGA-64-5815        TCGA-67-6217        TCGA-73-4659        TCGA-73-4662 
"DEFB116 WILD-TYPE" "DEFB116 WILD-TYPE" "DEFB116 WILD-TYPE" "DEFB116 WILD-TYPE" 
       TCGA-73-4666        TCGA-73-4668        TCGA-73-4670        TCGA-73-4675 
"DEFB116 WILD-TYPE" "DEFB116 WILD-TYPE" "DEFB116 WILD-TYPE" "DEFB116 WILD-TYPE" 
       TCGA-73-4676        TCGA-73-4677        TCGA-75-5122        TCGA-75-5125 
"DEFB116 WILD-TYPE" "DEFB116 WILD-TYPE" "DEFB116 WILD-TYPE" "DEFB116 WILD-TYPE" 
       TCGA-75-5126        TCGA-75-5146        TCGA-75-6206        TCGA-75-6207 
"DEFB116 WILD-TYPE" "DEFB116 WILD-TYPE" "DEFB116 WILD-TYPE" "DEFB116 WILD-TYPE" 
       TCGA-80-5611        TCGA-91-6828        TCGA-91-6829        TCGA-91-6835 
"DEFB116 WILD-TYPE" "DEFB116 WILD-TYPE" "DEFB116 WILD-TYPE" "DEFB116 WILD-TYPE" 
D294V13, multiclass
                                             clus
vv                                            DEFB116 MUTATED DEFB116 WILD-TYPE
  CURRENT REFORMED SMOKER FOR < OR = 15 YEARS               0                62
  CURRENT REFORMED SMOKER FOR > 15 YEARS                    2                44
  CURRENT SMOKER                                            0                28
  LIFELONG NON-SMOKER                                       1                23
D294V14, continuous
[1] "Remove cluster labels:" "DEFB116 MUTATED"       
clus
  DEFB116 MUTATED DEFB116 WILD-TYPE 
                1                67 
       TCGA-05-4384        TCGA-05-4390        TCGA-05-4405        TCGA-05-4410 
"DEFB116 WILD-TYPE" "DEFB116 WILD-TYPE" "DEFB116 WILD-TYPE" "DEFB116 WILD-TYPE" 
       TCGA-05-4415        TCGA-05-4417        TCGA-05-4424        TCGA-05-4427 
"DEFB116 WILD-TYPE" "DEFB116 WILD-TYPE" "DEFB116 WILD-TYPE" "DEFB116 WILD-TYPE" 
       TCGA-05-4433        TCGA-05-5420        TCGA-05-5423        TCGA-05-5425 
"DEFB116 WILD-TYPE" "DEFB116 WILD-TYPE" "DEFB116 WILD-TYPE" "DEFB116 WILD-TYPE" 
       TCGA-05-5428        TCGA-35-4122        TCGA-35-4123        TCGA-35-5375 
"DEFB116 WILD-TYPE" "DEFB116 WILD-TYPE" "DEFB116 WILD-TYPE" "DEFB116 WILD-TYPE" 
       TCGA-38-4625        TCGA-38-4626        TCGA-44-2655        TCGA-44-2656 
"DEFB116 WILD-TYPE" "DEFB116 WILD-TYPE" "DEFB116 WILD-TYPE" "DEFB116 WILD-TYPE" 
       TCGA-44-2657        TCGA-44-2659        TCGA-44-2662        TCGA-44-2666 
"DEFB116 WILD-TYPE" "DEFB116 WILD-TYPE" "DEFB116 WILD-TYPE" "DEFB116 WILD-TYPE" 
       TCGA-44-2668        TCGA-44-3396        TCGA-44-3398        TCGA-44-3918 
"DEFB116 WILD-TYPE" "DEFB116 WILD-TYPE" "DEFB116 WILD-TYPE" "DEFB116 WILD-TYPE" 
       TCGA-44-4112        TCGA-44-5645        TCGA-44-6144        TCGA-44-6145 
"DEFB116 WILD-TYPE" "DEFB116 WILD-TYPE" "DEFB116 WILD-TYPE" "DEFB116 WILD-TYPE" 
       TCGA-44-6147        TCGA-44-6148        TCGA-44-6774        TCGA-44-6775 
"DEFB116 WILD-TYPE" "DEFB116 WILD-TYPE" "DEFB116 WILD-TYPE" "DEFB116 WILD-TYPE" 
       TCGA-44-6776        TCGA-44-6777        TCGA-44-6778        TCGA-44-6779 
"DEFB116 WILD-TYPE" "DEFB116 WILD-TYPE" "DEFB116 WILD-TYPE" "DEFB116 WILD-TYPE" 
       TCGA-49-4486        TCGA-49-4494        TCGA-49-4505        TCGA-55-1592 
"DEFB116 WILD-TYPE" "DEFB116 WILD-TYPE" "DEFB116 WILD-TYPE" "DEFB116 WILD-TYPE" 
       TCGA-55-1594        TCGA-55-1595        TCGA-55-1596        TCGA-55-5899 
"DEFB116 WILD-TYPE" "DEFB116 WILD-TYPE" "DEFB116 WILD-TYPE" "DEFB116 WILD-TYPE" 
       TCGA-55-6642        TCGA-55-6712        TCGA-64-1677        TCGA-64-1678 
"DEFB116 WILD-TYPE" "DEFB116 WILD-TYPE" "DEFB116 WILD-TYPE" "DEFB116 WILD-TYPE" 
       TCGA-64-1680        TCGA-64-5774        TCGA-64-5775        TCGA-64-5778 
"DEFB116 WILD-TYPE" "DEFB116 WILD-TYPE" "DEFB116 WILD-TYPE" "DEFB116 WILD-TYPE" 
       TCGA-64-5779        TCGA-64-5781        TCGA-73-4659        TCGA-73-4662 
"DEFB116 WILD-TYPE" "DEFB116 WILD-TYPE" "DEFB116 WILD-TYPE" "DEFB116 WILD-TYPE" 
       TCGA-73-4666        TCGA-73-4668        TCGA-73-4670        TCGA-73-4675 
"DEFB116 WILD-TYPE" "DEFB116 WILD-TYPE" "DEFB116 WILD-TYPE" "DEFB116 WILD-TYPE" 
       TCGA-73-4676        TCGA-91-6829        TCGA-91-6836 
"DEFB116 WILD-TYPE" "DEFB116 WILD-TYPE" "DEFB116 WILD-TYPE" 

Clustering(295) Variable = ZCCHC5 MUTATION ANALYSIS
D295V1, survival
                  sevent
clus2               0  1
  ZCCHC5 MUTATED    6  2
  ZCCHC5 WILD-TYPE 93 48
  ZCCHC5 MUTATED ZCCHC5 WILD-TYPE 
               8              141 
  ZCCHC5 MUTATED ZCCHC5 WILD-TYPE 
               2               48 
$`ZCCHC5 MUTATED`
TCGA-05-4390 TCGA-05-4396 TCGA-05-4405 TCGA-05-4430 TCGA-05-5423 TCGA-38-4626 
       37.02         9.96        20.05        25.02         4.96        85.32 
TCGA-44-3396 TCGA-50-6590 
       10.22        42.31 

$`ZCCHC5 WILD-TYPE`
TCGA-05-4249 TCGA-05-4250 TCGA-05-4382 TCGA-05-4384 TCGA-05-4397 TCGA-05-4398 
       38.07         3.98        19.92        14.01        24.03        47.05 
TCGA-05-4402 TCGA-05-4415 TCGA-05-4417 TCGA-05-4418 TCGA-05-4420 TCGA-05-4424 
        8.02         2.96        14.93         8.98        29.95        30.02 
TCGA-05-4426 TCGA-05-4427 TCGA-05-4432 TCGA-05-4433 TCGA-05-4434 TCGA-05-5420 
       26.01        26.01        25.02        24.00        15.02         1.02 
TCGA-05-5425 TCGA-05-5429 TCGA-05-5715 TCGA-35-3615 TCGA-35-4122 TCGA-35-4123 
        2.96         0.99         2.04         0.46         7.36         5.95 
TCGA-35-5375 TCGA-38-4625 TCGA-38-4627 TCGA-38-4628 TCGA-38-4629 TCGA-38-4630 
        8.68        47.61        37.71        49.02        28.37        35.28 
TCGA-38-4631 TCGA-38-4632 TCGA-38-6178 TCGA-44-2655 TCGA-44-2656 TCGA-44-2657 
       11.64        44.61         5.19        18.87        19.10        13.15 
TCGA-44-2659 TCGA-44-2661 TCGA-44-2662 TCGA-44-2665 TCGA-44-2666 TCGA-44-2668 
       17.39         3.39        15.78        13.15         3.19         8.09 
TCGA-44-3398 TCGA-44-3918 TCGA-44-3919 TCGA-44-4112 TCGA-44-5643 TCGA-44-5645 
        8.32         6.44         6.21         4.60         3.48         6.84 
TCGA-44-6144 TCGA-44-6145 TCGA-44-6146 TCGA-44-6147 TCGA-44-6148 TCGA-44-6774 
        0.30         3.35         9.93         7.76         3.12         5.42 
TCGA-44-6775 TCGA-44-6776 TCGA-44-6777 TCGA-44-6778 TCGA-44-6779 TCGA-49-4486 
        2.70        63.72        32.45        36.49        16.41        76.21 
TCGA-49-4487 TCGA-49-4488 TCGA-49-4490 TCGA-49-4494 TCGA-49-4501 TCGA-49-4505 
       28.11        28.57        12.66        35.54        46.72        14.07 
TCGA-49-4506 TCGA-49-4507 TCGA-49-4510 TCGA-49-4512 TCGA-49-4514 TCGA-49-6742 
       32.84         8.81        29.46        29.75        43.20        15.02 
TCGA-49-6743 TCGA-49-6744 TCGA-49-6745 TCGA-50-5044 TCGA-50-5045 TCGA-50-5049 
       12.13        12.99         4.93        20.48        71.47        48.82 
TCGA-50-5051 TCGA-50-5055 TCGA-50-5066 TCGA-50-5068 TCGA-50-5072 TCGA-50-5930 
       14.96        25.81         9.76        49.28         8.05         9.27 
TCGA-50-5931 TCGA-50-5932 TCGA-50-5933 TCGA-50-5935 TCGA-50-5936 TCGA-50-5939 
        8.78        35.87        77.88        21.47         8.45        15.12 
TCGA-50-5941 TCGA-50-5942 TCGA-50-5944 TCGA-50-5946 TCGA-50-6591 TCGA-50-6592 
        9.37         4.44        12.26        11.47         3.88        25.51 
TCGA-50-6593 TCGA-50-6594 TCGA-50-6595 TCGA-50-6597 TCGA-55-1592 TCGA-55-1594 
       11.05        12.16         6.21        33.37        23.05        38.73 
TCGA-55-1595 TCGA-55-1596 TCGA-55-5899 TCGA-55-6543 TCGA-55-6642 TCGA-55-6712 
       48.62        45.17         2.86         0.07        32.61         0.79 
TCGA-64-1676 TCGA-64-1677 TCGA-64-1678 TCGA-64-1680 TCGA-64-5774 TCGA-64-5775 
       56.81        20.65        39.09        37.02        83.84         0.10 
TCGA-64-5778 TCGA-64-5779 TCGA-64-5781 TCGA-64-5815 TCGA-67-3770 TCGA-67-3771 
       30.44        16.67        39.52         7.33         0.99         1.97 
TCGA-67-3772 TCGA-67-3773 TCGA-67-3774 TCGA-67-6215 TCGA-67-6216 TCGA-67-6217 
        0.59         2.04         0.59         0.89         0.69        13.87 
TCGA-71-6725 TCGA-73-4658 TCGA-73-4659 TCGA-73-4662 TCGA-73-4666 TCGA-73-4668 
        2.01        52.57        23.38        29.95        20.28        15.35 
TCGA-73-4670 TCGA-73-4675 TCGA-73-4676 TCGA-73-4677 TCGA-91-6828 TCGA-91-6829 
        0.46         1.32         4.01         1.25         1.22        41.33 
TCGA-91-6831 TCGA-91-6835 TCGA-91-6836 
        1.28         1.15         0.36 

  ZCCHC5 MUTATED ZCCHC5 WILD-TYPE 
            4.96             0.07 
  ZCCHC5 MUTATED ZCCHC5 WILD-TYPE 
           85.32            83.84 
  ZCCHC5 MUTATED ZCCHC5 WILD-TYPE 
          22.535           13.150 
[1] "5.0 - 85.3 (22.5)" "0.1 - 83.8 (13.2)"
      TCGA-05-4249       TCGA-05-4250       TCGA-05-4382       TCGA-05-4384 
"ZCCHC5 WILD-TYPE" "ZCCHC5 WILD-TYPE" "ZCCHC5 WILD-TYPE" "ZCCHC5 WILD-TYPE" 
      TCGA-05-4390       TCGA-05-4396       TCGA-05-4397       TCGA-05-4398 
  "ZCCHC5 MUTATED"   "ZCCHC5 MUTATED" "ZCCHC5 WILD-TYPE" "ZCCHC5 WILD-TYPE" 
      TCGA-05-4402       TCGA-05-4405       TCGA-05-4415       TCGA-05-4417 
"ZCCHC5 WILD-TYPE"   "ZCCHC5 MUTATED" "ZCCHC5 WILD-TYPE" "ZCCHC5 WILD-TYPE" 
      TCGA-05-4418       TCGA-05-4420       TCGA-05-4424       TCGA-05-4426 
"ZCCHC5 WILD-TYPE" "ZCCHC5 WILD-TYPE" "ZCCHC5 WILD-TYPE" "ZCCHC5 WILD-TYPE" 
      TCGA-05-4427       TCGA-05-4430       TCGA-05-4432       TCGA-05-4433 
"ZCCHC5 WILD-TYPE"   "ZCCHC5 MUTATED" "ZCCHC5 WILD-TYPE" "ZCCHC5 WILD-TYPE" 
      TCGA-05-4434       TCGA-05-5420       TCGA-05-5423       TCGA-05-5425 
"ZCCHC5 WILD-TYPE" "ZCCHC5 WILD-TYPE"   "ZCCHC5 MUTATED" "ZCCHC5 WILD-TYPE" 
      TCGA-05-5429       TCGA-05-5715       TCGA-35-3615       TCGA-35-4122 
"ZCCHC5 WILD-TYPE" "ZCCHC5 WILD-TYPE" "ZCCHC5 WILD-TYPE" "ZCCHC5 WILD-TYPE" 
      TCGA-35-4123       TCGA-35-5375       TCGA-38-4625       TCGA-38-4626 
"ZCCHC5 WILD-TYPE" "ZCCHC5 WILD-TYPE" "ZCCHC5 WILD-TYPE"   "ZCCHC5 MUTATED" 
      TCGA-38-4627       TCGA-38-4628       TCGA-38-4629       TCGA-38-4630 
"ZCCHC5 WILD-TYPE" "ZCCHC5 WILD-TYPE" "ZCCHC5 WILD-TYPE" "ZCCHC5 WILD-TYPE" 
      TCGA-38-4631       TCGA-38-4632       TCGA-38-6178       TCGA-44-2655 
"ZCCHC5 WILD-TYPE" "ZCCHC5 WILD-TYPE" "ZCCHC5 WILD-TYPE" "ZCCHC5 WILD-TYPE" 
      TCGA-44-2656       TCGA-44-2657       TCGA-44-2659       TCGA-44-2661 
"ZCCHC5 WILD-TYPE" "ZCCHC5 WILD-TYPE" "ZCCHC5 WILD-TYPE" "ZCCHC5 WILD-TYPE" 
      TCGA-44-2662       TCGA-44-2665       TCGA-44-2666       TCGA-44-2668 
"ZCCHC5 WILD-TYPE" "ZCCHC5 WILD-TYPE" "ZCCHC5 WILD-TYPE" "ZCCHC5 WILD-TYPE" 
      TCGA-44-3396       TCGA-44-3398       TCGA-44-3918       TCGA-44-3919 
  "ZCCHC5 MUTATED" "ZCCHC5 WILD-TYPE" "ZCCHC5 WILD-TYPE" "ZCCHC5 WILD-TYPE" 
      TCGA-44-4112       TCGA-44-5643       TCGA-44-5645       TCGA-44-6144 
"ZCCHC5 WILD-TYPE" "ZCCHC5 WILD-TYPE" "ZCCHC5 WILD-TYPE" "ZCCHC5 WILD-TYPE" 
      TCGA-44-6145       TCGA-44-6146       TCGA-44-6147       TCGA-44-6148 
"ZCCHC5 WILD-TYPE" "ZCCHC5 WILD-TYPE" "ZCCHC5 WILD-TYPE" "ZCCHC5 WILD-TYPE" 
      TCGA-44-6774       TCGA-44-6775       TCGA-44-6776       TCGA-44-6777 
"ZCCHC5 WILD-TYPE" "ZCCHC5 WILD-TYPE" "ZCCHC5 WILD-TYPE" "ZCCHC5 WILD-TYPE" 
      TCGA-44-6778       TCGA-44-6779       TCGA-49-4486       TCGA-49-4487 
"ZCCHC5 WILD-TYPE" "ZCCHC5 WILD-TYPE" "ZCCHC5 WILD-TYPE" "ZCCHC5 WILD-TYPE" 
      TCGA-49-4488       TCGA-49-4490       TCGA-49-4494       TCGA-49-4501 
"ZCCHC5 WILD-TYPE" "ZCCHC5 WILD-TYPE" "ZCCHC5 WILD-TYPE" "ZCCHC5 WILD-TYPE" 
      TCGA-49-4505       TCGA-49-4506       TCGA-49-4507       TCGA-49-4510 
"ZCCHC5 WILD-TYPE" "ZCCHC5 WILD-TYPE" "ZCCHC5 WILD-TYPE" "ZCCHC5 WILD-TYPE" 
      TCGA-49-4512       TCGA-49-4514       TCGA-49-6742       TCGA-49-6743 
"ZCCHC5 WILD-TYPE" "ZCCHC5 WILD-TYPE" "ZCCHC5 WILD-TYPE" "ZCCHC5 WILD-TYPE" 
      TCGA-49-6744       TCGA-49-6745       TCGA-50-5044       TCGA-50-5045 
"ZCCHC5 WILD-TYPE" "ZCCHC5 WILD-TYPE" "ZCCHC5 WILD-TYPE" "ZCCHC5 WILD-TYPE" 
      TCGA-50-5049       TCGA-50-5051       TCGA-50-5055       TCGA-50-5066 
"ZCCHC5 WILD-TYPE" "ZCCHC5 WILD-TYPE" "ZCCHC5 WILD-TYPE" "ZCCHC5 WILD-TYPE" 
      TCGA-50-5068       TCGA-50-5072       TCGA-50-5930       TCGA-50-5931 
"ZCCHC5 WILD-TYPE" "ZCCHC5 WILD-TYPE" "ZCCHC5 WILD-TYPE" "ZCCHC5 WILD-TYPE" 
      TCGA-50-5932       TCGA-50-5933       TCGA-50-5935       TCGA-50-5936 
"ZCCHC5 WILD-TYPE" "ZCCHC5 WILD-TYPE" "ZCCHC5 WILD-TYPE" "ZCCHC5 WILD-TYPE" 
      TCGA-50-5939       TCGA-50-5941       TCGA-50-5942       TCGA-50-5944 
"ZCCHC5 WILD-TYPE" "ZCCHC5 WILD-TYPE" "ZCCHC5 WILD-TYPE" "ZCCHC5 WILD-TYPE" 
      TCGA-50-5946       TCGA-50-6590       TCGA-50-6591       TCGA-50-6592 
"ZCCHC5 WILD-TYPE"   "ZCCHC5 MUTATED" "ZCCHC5 WILD-TYPE" "ZCCHC5 WILD-TYPE" 
      TCGA-50-6593       TCGA-50-6594       TCGA-50-6595       TCGA-50-6597 
"ZCCHC5 WILD-TYPE" "ZCCHC5 WILD-TYPE" "ZCCHC5 WILD-TYPE" "ZCCHC5 WILD-TYPE" 
      TCGA-55-1592       TCGA-55-1594       TCGA-55-1595       TCGA-55-1596 
"ZCCHC5 WILD-TYPE" "ZCCHC5 WILD-TYPE" "ZCCHC5 WILD-TYPE" "ZCCHC5 WILD-TYPE" 
      TCGA-55-5899       TCGA-55-6543       TCGA-55-6642       TCGA-55-6712 
"ZCCHC5 WILD-TYPE" "ZCCHC5 WILD-TYPE" "ZCCHC5 WILD-TYPE" "ZCCHC5 WILD-TYPE" 
      TCGA-64-1676       TCGA-64-1677       TCGA-64-1678       TCGA-64-1680 
"ZCCHC5 WILD-TYPE" "ZCCHC5 WILD-TYPE" "ZCCHC5 WILD-TYPE" "ZCCHC5 WILD-TYPE" 
      TCGA-64-5774       TCGA-64-5775       TCGA-64-5778       TCGA-64-5779 
"ZCCHC5 WILD-TYPE" "ZCCHC5 WILD-TYPE" "ZCCHC5 WILD-TYPE" "ZCCHC5 WILD-TYPE" 
      TCGA-64-5781       TCGA-64-5815       TCGA-67-3770       TCGA-67-3771 
"ZCCHC5 WILD-TYPE" "ZCCHC5 WILD-TYPE" "ZCCHC5 WILD-TYPE" "ZCCHC5 WILD-TYPE" 
      TCGA-67-3772       TCGA-67-3773       TCGA-67-3774       TCGA-67-6215 
"ZCCHC5 WILD-TYPE" "ZCCHC5 WILD-TYPE" "ZCCHC5 WILD-TYPE" "ZCCHC5 WILD-TYPE" 
      TCGA-67-6216       TCGA-67-6217       TCGA-71-6725       TCGA-73-4658 
"ZCCHC5 WILD-TYPE" "ZCCHC5 WILD-TYPE" "ZCCHC5 WILD-TYPE" "ZCCHC5 WILD-TYPE" 
      TCGA-73-4659       TCGA-73-4662       TCGA-73-4666       TCGA-73-4668 
"ZCCHC5 WILD-TYPE" "ZCCHC5 WILD-TYPE" "ZCCHC5 WILD-TYPE" "ZCCHC5 WILD-TYPE" 
      TCGA-73-4670       TCGA-73-4675       TCGA-73-4676       TCGA-73-4677 
"ZCCHC5 WILD-TYPE" "ZCCHC5 WILD-TYPE" "ZCCHC5 WILD-TYPE" "ZCCHC5 WILD-TYPE" 
      TCGA-91-6828       TCGA-91-6829       TCGA-91-6831       TCGA-91-6835 
"ZCCHC5 WILD-TYPE" "ZCCHC5 WILD-TYPE" "ZCCHC5 WILD-TYPE" "ZCCHC5 WILD-TYPE" 
      TCGA-91-6836 
"ZCCHC5 WILD-TYPE" 
      TCGA-05-4249       TCGA-05-4250       TCGA-05-4382       TCGA-05-4384 
"ZCCHC5 WILD-TYPE" "ZCCHC5 WILD-TYPE" "ZCCHC5 WILD-TYPE" "ZCCHC5 WILD-TYPE" 
      TCGA-05-4390       TCGA-05-4396       TCGA-05-4397       TCGA-05-4398 
  "ZCCHC5 MUTATED"   "ZCCHC5 MUTATED" "ZCCHC5 WILD-TYPE" "ZCCHC5 WILD-TYPE" 
      TCGA-05-4402       TCGA-05-4405       TCGA-05-4415       TCGA-05-4417 
"ZCCHC5 WILD-TYPE"   "ZCCHC5 MUTATED" "ZCCHC5 WILD-TYPE" "ZCCHC5 WILD-TYPE" 
      TCGA-05-4418       TCGA-05-4420       TCGA-05-4424       TCGA-05-4426 
"ZCCHC5 WILD-TYPE" "ZCCHC5 WILD-TYPE" "ZCCHC5 WILD-TYPE" "ZCCHC5 WILD-TYPE" 
      TCGA-05-4427       TCGA-05-4430       TCGA-05-4432       TCGA-05-4433 
"ZCCHC5 WILD-TYPE"   "ZCCHC5 MUTATED" "ZCCHC5 WILD-TYPE" "ZCCHC5 WILD-TYPE" 
      TCGA-05-4434       TCGA-05-5420       TCGA-05-5423       TCGA-05-5425 
"ZCCHC5 WILD-TYPE" "ZCCHC5 WILD-TYPE"   "ZCCHC5 MUTATED" "ZCCHC5 WILD-TYPE" 
      TCGA-05-5429       TCGA-05-5715       TCGA-35-3615       TCGA-35-4122 
"ZCCHC5 WILD-TYPE" "ZCCHC5 WILD-TYPE" "ZCCHC5 WILD-TYPE" "ZCCHC5 WILD-TYPE" 
      TCGA-35-4123       TCGA-35-5375       TCGA-38-4625       TCGA-38-4626 
"ZCCHC5 WILD-TYPE" "ZCCHC5 WILD-TYPE" "ZCCHC5 WILD-TYPE"   "ZCCHC5 MUTATED" 
      TCGA-38-4627       TCGA-38-4628       TCGA-38-4629       TCGA-38-4630 
"ZCCHC5 WILD-TYPE" "ZCCHC5 WILD-TYPE" "ZCCHC5 WILD-TYPE" "ZCCHC5 WILD-TYPE" 
      TCGA-38-4631       TCGA-38-4632       TCGA-38-6178       TCGA-44-2655 
"ZCCHC5 WILD-TYPE" "ZCCHC5 WILD-TYPE" "ZCCHC5 WILD-TYPE" "ZCCHC5 WILD-TYPE" 
      TCGA-44-2656       TCGA-44-2657       TCGA-44-2659       TCGA-44-2661 
"ZCCHC5 WILD-TYPE" "ZCCHC5 WILD-TYPE" "ZCCHC5 WILD-TYPE" "ZCCHC5 WILD-TYPE" 
      TCGA-44-2662       TCGA-44-2665       TCGA-44-2666       TCGA-44-2668 
"ZCCHC5 WILD-TYPE" "ZCCHC5 WILD-TYPE" "ZCCHC5 WILD-TYPE" "ZCCHC5 WILD-TYPE" 
      TCGA-44-3396       TCGA-44-3398       TCGA-44-3918       TCGA-44-3919 
  "ZCCHC5 MUTATED" "ZCCHC5 WILD-TYPE" "ZCCHC5 WILD-TYPE" "ZCCHC5 WILD-TYPE" 
      TCGA-44-4112       TCGA-44-5643       TCGA-44-5645       TCGA-44-6144 
"ZCCHC5 WILD-TYPE" "ZCCHC5 WILD-TYPE" "ZCCHC5 WILD-TYPE" "ZCCHC5 WILD-TYPE" 
      TCGA-44-6145       TCGA-44-6146       TCGA-44-6147       TCGA-44-6148 
"ZCCHC5 WILD-TYPE" "ZCCHC5 WILD-TYPE" "ZCCHC5 WILD-TYPE" "ZCCHC5 WILD-TYPE" 
      TCGA-44-6774       TCGA-44-6775       TCGA-44-6776       TCGA-44-6777 
"ZCCHC5 WILD-TYPE" "ZCCHC5 WILD-TYPE" "ZCCHC5 WILD-TYPE" "ZCCHC5 WILD-TYPE" 
      TCGA-44-6778       TCGA-44-6779       TCGA-49-4486       TCGA-49-4487 
"ZCCHC5 WILD-TYPE" "ZCCHC5 WILD-TYPE" "ZCCHC5 WILD-TYPE" "ZCCHC5 WILD-TYPE" 
      TCGA-49-4488       TCGA-49-4490       TCGA-49-4494       TCGA-49-4501 
"ZCCHC5 WILD-TYPE" "ZCCHC5 WILD-TYPE" "ZCCHC5 WILD-TYPE" "ZCCHC5 WILD-TYPE" 
      TCGA-49-4505       TCGA-49-4506       TCGA-49-4507       TCGA-49-4510 
"ZCCHC5 WILD-TYPE" "ZCCHC5 WILD-TYPE" "ZCCHC5 WILD-TYPE" "ZCCHC5 WILD-TYPE" 
      TCGA-49-4512       TCGA-49-4514       TCGA-49-6742       TCGA-49-6743 
"ZCCHC5 WILD-TYPE" "ZCCHC5 WILD-TYPE" "ZCCHC5 WILD-TYPE" "ZCCHC5 WILD-TYPE" 
      TCGA-49-6744       TCGA-49-6745       TCGA-50-5044       TCGA-50-5045 
"ZCCHC5 WILD-TYPE" "ZCCHC5 WILD-TYPE" "ZCCHC5 WILD-TYPE" "ZCCHC5 WILD-TYPE" 
      TCGA-50-5049       TCGA-50-5051       TCGA-50-5055       TCGA-50-5066 
"ZCCHC5 WILD-TYPE" "ZCCHC5 WILD-TYPE" "ZCCHC5 WILD-TYPE" "ZCCHC5 WILD-TYPE" 
      TCGA-50-5068       TCGA-50-5072       TCGA-50-5930       TCGA-50-5931 
"ZCCHC5 WILD-TYPE" "ZCCHC5 WILD-TYPE" "ZCCHC5 WILD-TYPE" "ZCCHC5 WILD-TYPE" 
      TCGA-50-5932       TCGA-50-5933       TCGA-50-5935       TCGA-50-5936 
"ZCCHC5 WILD-TYPE" "ZCCHC5 WILD-TYPE" "ZCCHC5 WILD-TYPE" "ZCCHC5 WILD-TYPE" 
      TCGA-50-5939       TCGA-50-5941       TCGA-50-5942       TCGA-50-5944 
"ZCCHC5 WILD-TYPE" "ZCCHC5 WILD-TYPE" "ZCCHC5 WILD-TYPE" "ZCCHC5 WILD-TYPE" 
      TCGA-50-5946       TCGA-50-6590       TCGA-50-6591       TCGA-50-6592 
"ZCCHC5 WILD-TYPE"   "ZCCHC5 MUTATED" "ZCCHC5 WILD-TYPE" "ZCCHC5 WILD-TYPE" 
      TCGA-50-6593       TCGA-50-6594       TCGA-50-6595       TCGA-50-6597 
"ZCCHC5 WILD-TYPE" "ZCCHC5 WILD-TYPE" "ZCCHC5 WILD-TYPE" "ZCCHC5 WILD-TYPE" 
      TCGA-55-1592       TCGA-55-1594       TCGA-55-1595       TCGA-55-1596 
"ZCCHC5 WILD-TYPE" "ZCCHC5 WILD-TYPE" "ZCCHC5 WILD-TYPE" "ZCCHC5 WILD-TYPE" 
      TCGA-55-5899       TCGA-55-6543       TCGA-55-6642       TCGA-55-6712 
"ZCCHC5 WILD-TYPE" "ZCCHC5 WILD-TYPE" "ZCCHC5 WILD-TYPE" "ZCCHC5 WILD-TYPE" 
      TCGA-64-1676       TCGA-64-1677       TCGA-64-1678       TCGA-64-1680 
"ZCCHC5 WILD-TYPE" "ZCCHC5 WILD-TYPE" "ZCCHC5 WILD-TYPE" "ZCCHC5 WILD-TYPE" 
      TCGA-64-5774       TCGA-64-5775       TCGA-64-5778       TCGA-64-5779 
"ZCCHC5 WILD-TYPE" "ZCCHC5 WILD-TYPE" "ZCCHC5 WILD-TYPE" "ZCCHC5 WILD-TYPE" 
      TCGA-64-5781       TCGA-64-5815       TCGA-67-3770       TCGA-67-3771 
"ZCCHC5 WILD-TYPE" "ZCCHC5 WILD-TYPE" "ZCCHC5 WILD-TYPE" "ZCCHC5 WILD-TYPE" 
      TCGA-67-3772       TCGA-67-3773       TCGA-67-3774       TCGA-67-6215 
"ZCCHC5 WILD-TYPE" "ZCCHC5 WILD-TYPE" "ZCCHC5 WILD-TYPE" "ZCCHC5 WILD-TYPE" 
      TCGA-67-6216       TCGA-67-6217       TCGA-71-6725       TCGA-73-4658 
"ZCCHC5 WILD-TYPE" "ZCCHC5 WILD-TYPE" "ZCCHC5 WILD-TYPE" "ZCCHC5 WILD-TYPE" 
      TCGA-73-4659       TCGA-73-4662       TCGA-73-4666       TCGA-73-4668 
"ZCCHC5 WILD-TYPE" "ZCCHC5 WILD-TYPE" "ZCCHC5 WILD-TYPE" "ZCCHC5 WILD-TYPE" 
      TCGA-73-4670       TCGA-73-4675       TCGA-73-4676       TCGA-73-4677 
"ZCCHC5 WILD-TYPE" "ZCCHC5 WILD-TYPE" "ZCCHC5 WILD-TYPE" "ZCCHC5 WILD-TYPE" 
      TCGA-91-6828       TCGA-91-6829       TCGA-91-6831       TCGA-91-6835 
"ZCCHC5 WILD-TYPE" "ZCCHC5 WILD-TYPE" "ZCCHC5 WILD-TYPE" "ZCCHC5 WILD-TYPE" 
      TCGA-91-6836 
"ZCCHC5 WILD-TYPE" 
      TCGA-05-4249       TCGA-05-4250       TCGA-05-4382       TCGA-05-4384 
"ZCCHC5 WILD-TYPE" "ZCCHC5 WILD-TYPE" "ZCCHC5 WILD-TYPE" "ZCCHC5 WILD-TYPE" 
      TCGA-05-4390       TCGA-05-4396       TCGA-05-4397       TCGA-05-4398 
  "ZCCHC5 MUTATED"   "ZCCHC5 MUTATED" "ZCCHC5 WILD-TYPE" "ZCCHC5 WILD-TYPE" 
      TCGA-05-4402       TCGA-05-4405       TCGA-05-4415       TCGA-05-4417 
"ZCCHC5 WILD-TYPE"   "ZCCHC5 MUTATED" "ZCCHC5 WILD-TYPE" "ZCCHC5 WILD-TYPE" 
      TCGA-05-4418       TCGA-05-4420       TCGA-05-4424       TCGA-05-4426 
"ZCCHC5 WILD-TYPE" "ZCCHC5 WILD-TYPE" "ZCCHC5 WILD-TYPE" "ZCCHC5 WILD-TYPE" 
      TCGA-05-4427       TCGA-05-4430       TCGA-05-4432       TCGA-05-4433 
"ZCCHC5 WILD-TYPE"   "ZCCHC5 MUTATED" "ZCCHC5 WILD-TYPE" "ZCCHC5 WILD-TYPE" 
      TCGA-05-4434       TCGA-05-5420       TCGA-05-5423       TCGA-05-5425 
"ZCCHC5 WILD-TYPE" "ZCCHC5 WILD-TYPE"   "ZCCHC5 MUTATED" "ZCCHC5 WILD-TYPE" 
      TCGA-05-5429       TCGA-05-5715       TCGA-35-3615       TCGA-35-4122 
"ZCCHC5 WILD-TYPE" "ZCCHC5 WILD-TYPE" "ZCCHC5 WILD-TYPE" "ZCCHC5 WILD-TYPE" 
      TCGA-35-4123       TCGA-35-5375       TCGA-38-4625       TCGA-38-4626 
"ZCCHC5 WILD-TYPE" "ZCCHC5 WILD-TYPE" "ZCCHC5 WILD-TYPE"   "ZCCHC5 MUTATED" 
      TCGA-38-4627       TCGA-38-4628       TCGA-38-4629       TCGA-38-4630 
"ZCCHC5 WILD-TYPE" "ZCCHC5 WILD-TYPE" "ZCCHC5 WILD-TYPE" "ZCCHC5 WILD-TYPE" 
      TCGA-38-4631       TCGA-38-4632       TCGA-38-6178       TCGA-44-2655 
"ZCCHC5 WILD-TYPE" "ZCCHC5 WILD-TYPE" "ZCCHC5 WILD-TYPE" "ZCCHC5 WILD-TYPE" 
      TCGA-44-2656       TCGA-44-2657       TCGA-44-2659       TCGA-44-2661 
"ZCCHC5 WILD-TYPE" "ZCCHC5 WILD-TYPE" "ZCCHC5 WILD-TYPE" "ZCCHC5 WILD-TYPE" 
      TCGA-44-2662       TCGA-44-2665       TCGA-44-2666       TCGA-44-2668 
"ZCCHC5 WILD-TYPE" "ZCCHC5 WILD-TYPE" "ZCCHC5 WILD-TYPE" "ZCCHC5 WILD-TYPE" 
      TCGA-44-3396       TCGA-44-3398       TCGA-44-3918       TCGA-44-3919 
  "ZCCHC5 MUTATED" "ZCCHC5 WILD-TYPE" "ZCCHC5 WILD-TYPE" "ZCCHC5 WILD-TYPE" 
      TCGA-44-4112       TCGA-44-5643       TCGA-44-5645       TCGA-44-6144 
"ZCCHC5 WILD-TYPE" "ZCCHC5 WILD-TYPE" "ZCCHC5 WILD-TYPE" "ZCCHC5 WILD-TYPE" 
      TCGA-44-6145       TCGA-44-6146       TCGA-44-6147       TCGA-44-6148 
"ZCCHC5 WILD-TYPE" "ZCCHC5 WILD-TYPE" "ZCCHC5 WILD-TYPE" "ZCCHC5 WILD-TYPE" 
      TCGA-44-6774       TCGA-44-6775       TCGA-44-6776       TCGA-44-6777 
"ZCCHC5 WILD-TYPE" "ZCCHC5 WILD-TYPE" "ZCCHC5 WILD-TYPE" "ZCCHC5 WILD-TYPE" 
      TCGA-44-6778       TCGA-44-6779       TCGA-49-4486       TCGA-49-4487 
"ZCCHC5 WILD-TYPE" "ZCCHC5 WILD-TYPE" "ZCCHC5 WILD-TYPE" "ZCCHC5 WILD-TYPE" 
      TCGA-49-4488       TCGA-49-4490       TCGA-49-4494       TCGA-49-4501 
"ZCCHC5 WILD-TYPE" "ZCCHC5 WILD-TYPE" "ZCCHC5 WILD-TYPE" "ZCCHC5 WILD-TYPE" 
      TCGA-49-4505       TCGA-49-4506       TCGA-49-4507       TCGA-49-4510 
"ZCCHC5 WILD-TYPE" "ZCCHC5 WILD-TYPE" "ZCCHC5 WILD-TYPE" "ZCCHC5 WILD-TYPE" 
      TCGA-49-4512       TCGA-49-4514       TCGA-49-6742       TCGA-49-6743 
"ZCCHC5 WILD-TYPE" "ZCCHC5 WILD-TYPE" "ZCCHC5 WILD-TYPE" "ZCCHC5 WILD-TYPE" 
      TCGA-49-6744       TCGA-49-6745       TCGA-50-5044       TCGA-50-5045 
"ZCCHC5 WILD-TYPE" "ZCCHC5 WILD-TYPE" "ZCCHC5 WILD-TYPE" "ZCCHC5 WILD-TYPE" 
      TCGA-50-5049       TCGA-50-5051       TCGA-50-5055       TCGA-50-5066 
"ZCCHC5 WILD-TYPE" "ZCCHC5 WILD-TYPE" "ZCCHC5 WILD-TYPE" "ZCCHC5 WILD-TYPE" 
      TCGA-50-5068       TCGA-50-5072       TCGA-50-5930       TCGA-50-5931 
"ZCCHC5 WILD-TYPE" "ZCCHC5 WILD-TYPE" "ZCCHC5 WILD-TYPE" "ZCCHC5 WILD-TYPE" 
      TCGA-50-5932       TCGA-50-5933       TCGA-50-5935       TCGA-50-5936 
"ZCCHC5 WILD-TYPE" "ZCCHC5 WILD-TYPE" "ZCCHC5 WILD-TYPE" "ZCCHC5 WILD-TYPE" 
      TCGA-50-5939       TCGA-50-5941       TCGA-50-5942       TCGA-50-5944 
"ZCCHC5 WILD-TYPE" "ZCCHC5 WILD-TYPE" "ZCCHC5 WILD-TYPE" "ZCCHC5 WILD-TYPE" 
      TCGA-50-5946       TCGA-50-6590       TCGA-50-6591       TCGA-50-6592 
"ZCCHC5 WILD-TYPE"   "ZCCHC5 MUTATED" "ZCCHC5 WILD-TYPE" "ZCCHC5 WILD-TYPE" 
      TCGA-50-6593       TCGA-50-6594       TCGA-50-6595       TCGA-50-6597 
"ZCCHC5 WILD-TYPE" "ZCCHC5 WILD-TYPE" "ZCCHC5 WILD-TYPE" "ZCCHC5 WILD-TYPE" 
      TCGA-55-1592       TCGA-55-1594       TCGA-55-1595       TCGA-55-1596 
"ZCCHC5 WILD-TYPE" "ZCCHC5 WILD-TYPE" "ZCCHC5 WILD-TYPE" "ZCCHC5 WILD-TYPE" 
      TCGA-55-5899       TCGA-55-6543       TCGA-55-6642       TCGA-55-6712 
"ZCCHC5 WILD-TYPE" "ZCCHC5 WILD-TYPE" "ZCCHC5 WILD-TYPE" "ZCCHC5 WILD-TYPE" 
      TCGA-64-1676       TCGA-64-1677       TCGA-64-1678       TCGA-64-1680 
"ZCCHC5 WILD-TYPE" "ZCCHC5 WILD-TYPE" "ZCCHC5 WILD-TYPE" "ZCCHC5 WILD-TYPE" 
      TCGA-64-5774       TCGA-64-5775       TCGA-64-5778       TCGA-64-5779 
"ZCCHC5 WILD-TYPE" "ZCCHC5 WILD-TYPE" "ZCCHC5 WILD-TYPE" "ZCCHC5 WILD-TYPE" 
      TCGA-64-5781       TCGA-64-5815       TCGA-67-3770       TCGA-67-3771 
"ZCCHC5 WILD-TYPE" "ZCCHC5 WILD-TYPE" "ZCCHC5 WILD-TYPE" "ZCCHC5 WILD-TYPE" 
      TCGA-67-3772       TCGA-67-3773       TCGA-67-3774       TCGA-67-6215 
"ZCCHC5 WILD-TYPE" "ZCCHC5 WILD-TYPE" "ZCCHC5 WILD-TYPE" "ZCCHC5 WILD-TYPE" 
      TCGA-67-6216       TCGA-67-6217       TCGA-71-6725       TCGA-73-4658 
"ZCCHC5 WILD-TYPE" "ZCCHC5 WILD-TYPE" "ZCCHC5 WILD-TYPE" "ZCCHC5 WILD-TYPE" 
      TCGA-73-4659       TCGA-73-4662       TCGA-73-4666       TCGA-73-4668 
"ZCCHC5 WILD-TYPE" "ZCCHC5 WILD-TYPE" "ZCCHC5 WILD-TYPE" "ZCCHC5 WILD-TYPE" 
      TCGA-73-4670       TCGA-73-4675       TCGA-73-4676       TCGA-73-4677 
"ZCCHC5 WILD-TYPE" "ZCCHC5 WILD-TYPE" "ZCCHC5 WILD-TYPE" "ZCCHC5 WILD-TYPE" 
      TCGA-91-6828       TCGA-91-6829       TCGA-91-6831       TCGA-91-6835 
"ZCCHC5 WILD-TYPE" "ZCCHC5 WILD-TYPE" "ZCCHC5 WILD-TYPE" "ZCCHC5 WILD-TYPE" 
      TCGA-91-6836 
"ZCCHC5 WILD-TYPE" 
[1] "hr=" "2.3"
D295V2, continuous
D295V3, binary
[1] "tbl2"
                  cls
clus               [,1] [,2]
  ZCCHC5 MUTATED      7    3
  ZCCHC5 WILD-TYPE   86   76
        clus
vv       ZCCHC5 MUTATED ZCCHC5 WILD-TYPE
  FEMALE              7               86
  MALE                3               76
D295V4, continuous
D295V5, multiclass
D295V6, multiclass
    clus
vv   ZCCHC5 MUTATED ZCCHC5 WILD-TYPE
  T1              0               41
  T2              9               99
  T3              0               14
  T4              1                7
D295V7, multiclass
       clus
vv      ZCCHC5 MUTATED ZCCHC5 WILD-TYPE
  N0                 7               88
  N1                 2               35
  N2+N3              1               34
D295V8, multiclass
    clus
vv   ZCCHC5 MUTATED ZCCHC5 WILD-TYPE
  M0             10              127
  M1              0                9
  MX              0               22
D295V9, multiclass
     clus
vv    ZCCHC5 MUTATED ZCCHC5 WILD-TYPE
  I                6               82
  II               2               31
  III              2               37
  IV               0                9
D295V10, binary
[1] "tbl2"
                  cls
clus               [,1] [,2]
  ZCCHC5 MUTATED      0   10
  ZCCHC5 WILD-TYPE   16  146
     clus
vv    ZCCHC5 MUTATED ZCCHC5 WILD-TYPE
  NO               0               16
  YES             10              146
D295V11, continuous
D295V12, continuous
D295V13, multiclass
                                             clus
vv                                            ZCCHC5 MUTATED ZCCHC5 WILD-TYPE
  CURRENT REFORMED SMOKER FOR < OR = 15 YEARS              4               58
  CURRENT REFORMED SMOKER FOR > 15 YEARS                   3               43
  CURRENT SMOKER                                           3               25
  LIFELONG NON-SMOKER                                      0               24
D295V14, continuous
                                    V1.D 
                         "Time to Death" 
                                      V2 
                                   "AGE" 
                                      V3 
                                "GENDER" 
                                      V4 
           "KARNOFSKY.PERFORMANCE.SCORE" 
                                      V5 
                     "HISTOLOGICAL.TYPE" 
                                      V6 
                           "PATHOLOGY.T" 
                                      V7 
                           "PATHOLOGY.N" 
                                      V8 
                   "PATHOLOGICSPREAD(M)" 
                                      V9 
                           "TUMOR.STAGE" 
                                     V10 
"RADIATIONS.RADIATION.REGIMENINDICATION" 
                                     V11 
                 "NUMBERPACKYEARSSMOKED" 
                                     V12 
                    "STOPPEDSMOKINGYEAR" 
                                     V13 
        "TOBACCOSMOKINGHISTORYINDICATOR" 
                                     V14 
             "YEAROFTOBACCOSMOKINGONSET" 
> q(save="no")
