
R version 2.10.1 (2009-12-14)
Copyright (C) 2009 The R Foundation for Statistical Computing
ISBN 3-900051-07-0

R is free software and comes with ABSOLUTELY NO WARRANTY.
You are welcome to redistribute it under certain conditions.
Type 'license()' or 'licence()' for distribution details.

R is a collaborative project with many contributors.
Type 'contributors()' for more information and
'citation()' on how to cite R or R packages in publications.

Type 'demo()' for some demos, 'help()' for on-line help, or
'help.start()' for an HTML browser interface to help.
Type 'q()' to quit R.

> source("/xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/Correlate_Clinical_Cnvs_onlysig.41.3771/CNV2ClinicalAnalysis_nozzle_onlysig.R")
> result <- main("/xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/Correlate_Clinical_Cnvs_onlysig.41.3771/", "-nF=/xchip/tcga/Tools/Nozzle/v1.current", "-iD=/xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/302978/all_lesions.conf_99.cnv.cluster.txt", "-iC=/xchip/cga/gdac-prod/tcga-gdac/jobResults/GDAC_clinicalDataPickerPipeline/STAD-TP/2332215/1.GDAC_clinicalDataPicker.Finished/STAD-TP.clin.merged.picked.txt", "-fF=ALL", "-fC=3", "-fH=5", "-fW=9", "-fP=OUT", "-cP=1", "-cQ=0.25", "-MF=ONLYSIG", "-oT=STAD-TP", "-nV=Nozzle.R1", "-OP=MUTSIG", "-iT=", "-iX=")
[1] "nver"          "-nV=Nozzle.R1"
[1] "nfn"                                 "/xchip/tcga/Tools/Nozzle/v1.current"
[1] "Nozzle.R1"
[1] "successfully load Nozzle.R1"
[1] "ofn"         "-oT=STAD-TP"
[1] "opt"        "-OP=MUTSIG"
[1] "tl"   "-iT="
[1] "dx"   "-iX="
[1] "opt"    "MUTSIG"
[1] "dx" ""  

nPatients in clinical file=162, in cluster file=237, common to both=161
[1]  72 161
[1] "Amp Peak  1(1p36.22) mutation analysis"
[1] 3
  AMP PEAK  1(1P36.22) MUTATED AMP PEAK  1(1P36.22) WILD-TYPE 
                            22                            139 
  AMP PEAK  1(1P36.22) MUTATED AMP PEAK  1(1P36.22) WILD-TYPE 
                            22                            139 
[1] "Amp Peak  2(1q21.3) mutation analysis"
[1] 3
  AMP PEAK  2(1Q21.3) MUTATED AMP PEAK  2(1Q21.3) WILD-TYPE 
                           50                           111 
  AMP PEAK  2(1Q21.3) MUTATED AMP PEAK  2(1Q21.3) WILD-TYPE 
                           50                           111 
[1] "Amp Peak  3(1q42.3) mutation analysis"
[1] 3
  AMP PEAK  3(1Q42.3) MUTATED AMP PEAK  3(1Q42.3) WILD-TYPE 
                           47                           114 
  AMP PEAK  3(1Q42.3) MUTATED AMP PEAK  3(1Q42.3) WILD-TYPE 
                           47                           114 
[1] "Amp Peak  4(3q26.31) mutation analysis"
[1] 3
  AMP PEAK  4(3Q26.31) MUTATED AMP PEAK  4(3Q26.31) WILD-TYPE 
                            48                            113 
  AMP PEAK  4(3Q26.31) MUTATED AMP PEAK  4(3Q26.31) WILD-TYPE 
                            48                            113 
[1] "Amp Peak  5(5p13.1) mutation analysis"
[1] 3
  AMP PEAK  5(5P13.1) MUTATED AMP PEAK  5(5P13.1) WILD-TYPE 
                           44                           117 
  AMP PEAK  5(5P13.1) MUTATED AMP PEAK  5(5P13.1) WILD-TYPE 
                           44                           117 
[1] "Amp Peak  6(6p21.1) mutation analysis"
[1] 3
  AMP PEAK  6(6P21.1) MUTATED AMP PEAK  6(6P21.1) WILD-TYPE 
                           45                           116 
  AMP PEAK  6(6P21.1) MUTATED AMP PEAK  6(6P21.1) WILD-TYPE 
                           45                           116 
[1] "Amp Peak  7(6q12) mutation analysis"
[1] 3
  AMP PEAK  7(6Q12) MUTATED AMP PEAK  7(6Q12) WILD-TYPE 
                         33                         128 
  AMP PEAK  7(6Q12) MUTATED AMP PEAK  7(6Q12) WILD-TYPE 
                         33                         128 
[1] "Amp Peak  8(7p11.2) mutation analysis"
[1] 3
  AMP PEAK  8(7P11.2) MUTATED AMP PEAK  8(7P11.2) WILD-TYPE 
                           69                            92 
  AMP PEAK  8(7P11.2) MUTATED AMP PEAK  8(7P11.2) WILD-TYPE 
                           69                            92 
[1] "Amp Peak  9(7q21.2) mutation analysis"
[1] 3
  AMP PEAK  9(7Q21.2) MUTATED AMP PEAK  9(7Q21.2) WILD-TYPE 
                           71                            90 
  AMP PEAK  9(7Q21.2) MUTATED AMP PEAK  9(7Q21.2) WILD-TYPE 
                           71                            90 
[1] "Amp Peak 10(8p23.1) mutation analysis"
[1] 3
  AMP PEAK 10(8P23.1) MUTATED AMP PEAK 10(8P23.1) WILD-TYPE 
                           59                           102 
  AMP PEAK 10(8P23.1) MUTATED AMP PEAK 10(8P23.1) WILD-TYPE 
                           59                           102 
[1] "Amp Peak 11(8q24.21) mutation analysis"
[1] 3
  AMP PEAK 11(8Q24.21) MUTATED AMP PEAK 11(8Q24.21) WILD-TYPE 
                           102                             59 
  AMP PEAK 11(8Q24.21) MUTATED AMP PEAK 11(8Q24.21) WILD-TYPE 
                           102                             59 
[1] "Amp Peak 12(9p24.1) mutation analysis"
[1] 3
  AMP PEAK 12(9P24.1) MUTATED AMP PEAK 12(9P24.1) WILD-TYPE 
                           22                           139 
  AMP PEAK 12(9P24.1) MUTATED AMP PEAK 12(9P24.1) WILD-TYPE 
                           22                           139 
[1] "Amp Peak 13(9q34.3) mutation analysis"
[1] 3
  AMP PEAK 13(9Q34.3) MUTATED AMP PEAK 13(9Q34.3) WILD-TYPE 
                           39                           122 
  AMP PEAK 13(9Q34.3) MUTATED AMP PEAK 13(9Q34.3) WILD-TYPE 
                           39                           122 
[1] "Amp Peak 14(10q26.13) mutation analysis"
[1] 3
  AMP PEAK 14(10Q26.13) MUTATED AMP PEAK 14(10Q26.13) WILD-TYPE 
                             33                             128 
  AMP PEAK 14(10Q26.13) MUTATED AMP PEAK 14(10Q26.13) WILD-TYPE 
                             33                             128 
[1] "Amp Peak 15(11p13) mutation analysis"
[1] 3
  AMP PEAK 15(11P13) MUTATED AMP PEAK 15(11P13) WILD-TYPE 
                          25                          136 
  AMP PEAK 15(11P13) MUTATED AMP PEAK 15(11P13) WILD-TYPE 
                          25                          136 
[1] "Amp Peak 16(11q13.3) mutation analysis"
[1] 3
  AMP PEAK 16(11Q13.3) MUTATED AMP PEAK 16(11Q13.3) WILD-TYPE 
                            28                            133 
  AMP PEAK 16(11Q13.3) MUTATED AMP PEAK 16(11Q13.3) WILD-TYPE 
                            28                            133 
[1] "Amp Peak 17(12p12.1) mutation analysis"
[1] 3
  AMP PEAK 17(12P12.1) MUTATED AMP PEAK 17(12P12.1) WILD-TYPE 
                            37                            124 
  AMP PEAK 17(12P12.1) MUTATED AMP PEAK 17(12P12.1) WILD-TYPE 
                            37                            124 
[1] "Amp Peak 18(12q15) mutation analysis"
[1] 3
  AMP PEAK 18(12Q15) MUTATED AMP PEAK 18(12Q15) WILD-TYPE 
                          35                          126 
  AMP PEAK 18(12Q15) MUTATED AMP PEAK 18(12Q15) WILD-TYPE 
                          35                          126 
[1] "Amp Peak 19(13q12.3) mutation analysis"
[1] 3
  AMP PEAK 19(13Q12.3) MUTATED AMP PEAK 19(13Q12.3) WILD-TYPE 
                            58                            103 
  AMP PEAK 19(13Q12.3) MUTATED AMP PEAK 19(13Q12.3) WILD-TYPE 
                            58                            103 
[1] "Amp Peak 20(13q22.1) mutation analysis"
[1] 3
  AMP PEAK 20(13Q22.1) MUTATED AMP PEAK 20(13Q22.1) WILD-TYPE 
                            65                             96 
  AMP PEAK 20(13Q22.1) MUTATED AMP PEAK 20(13Q22.1) WILD-TYPE 
                            65                             96 
[1] "Amp Peak 21(15q26.1) mutation analysis"
[1] 3
  AMP PEAK 21(15Q26.1) MUTATED AMP PEAK 21(15Q26.1) WILD-TYPE 
                            40                            121 
  AMP PEAK 21(15Q26.1) MUTATED AMP PEAK 21(15Q26.1) WILD-TYPE 
                            40                            121 
[1] "Amp Peak 22(17q12) mutation analysis"
[1] 3
  AMP PEAK 22(17Q12) MUTATED AMP PEAK 22(17Q12) WILD-TYPE 
                          43                          118 
  AMP PEAK 22(17Q12) MUTATED AMP PEAK 22(17Q12) WILD-TYPE 
                          43                          118 
[1] "Amp Peak 23(18q11.2) mutation analysis"
[1] 3
  AMP PEAK 23(18Q11.2) MUTATED AMP PEAK 23(18Q11.2) WILD-TYPE 
                            44                            117 
  AMP PEAK 23(18Q11.2) MUTATED AMP PEAK 23(18Q11.2) WILD-TYPE 
                            44                            117 
[1] "Amp Peak 24(19q12) mutation analysis"
[1] 3
  AMP PEAK 24(19Q12) MUTATED AMP PEAK 24(19Q12) WILD-TYPE 
                          44                          117 
  AMP PEAK 24(19Q12) MUTATED AMP PEAK 24(19Q12) WILD-TYPE 
                          44                          117 
[1] "Amp Peak 25(20q13.2) mutation analysis"
[1] 3
  AMP PEAK 25(20Q13.2) MUTATED AMP PEAK 25(20Q13.2) WILD-TYPE 
                            99                             62 
  AMP PEAK 25(20Q13.2) MUTATED AMP PEAK 25(20Q13.2) WILD-TYPE 
                            99                             62 
[1] "Amp Peak 26(Xq27.3) mutation analysis"
[1] 3
  AMP PEAK 26(XQ27.3) MUTATED AMP PEAK 26(XQ27.3) WILD-TYPE 
                           32                           129 
  AMP PEAK 26(XQ27.3) MUTATED AMP PEAK 26(XQ27.3) WILD-TYPE 
                           32                           129 
[1] "Del Peak  1(1p36.11) mutation analysis"
[1] 3
  DEL PEAK  1(1P36.11) MUTATED DEL PEAK  1(1P36.11) WILD-TYPE 
                            40                            121 
  DEL PEAK  1(1P36.11) MUTATED DEL PEAK  1(1P36.11) WILD-TYPE 
                            40                            121 
[1] "Del Peak  2(1p31.1) mutation analysis"
[1] 3
  DEL PEAK  2(1P31.1) MUTATED DEL PEAK  2(1P31.1) WILD-TYPE 
                           26                           135 
  DEL PEAK  2(1P31.1) MUTATED DEL PEAK  2(1P31.1) WILD-TYPE 
                           26                           135 
[1] "Del Peak  3(1q44) mutation analysis"
[1] 3
  DEL PEAK  3(1Q44) MUTATED DEL PEAK  3(1Q44) WILD-TYPE 
                         12                         149 
  DEL PEAK  3(1Q44) MUTATED DEL PEAK  3(1Q44) WILD-TYPE 
                         12                         149 
[1] "Del Peak  4(2q32.1) mutation analysis"
[1] 3
  DEL PEAK  4(2Q32.1) MUTATED DEL PEAK  4(2Q32.1) WILD-TYPE 
                           19                           142 
  DEL PEAK  4(2Q32.1) MUTATED DEL PEAK  4(2Q32.1) WILD-TYPE 
                           19                           142 
[1] "Del Peak  5(2q33.3) mutation analysis"
[1] 3
  DEL PEAK  5(2Q33.3) MUTATED DEL PEAK  5(2Q33.3) WILD-TYPE 
                           16                           145 
  DEL PEAK  5(2Q33.3) MUTATED DEL PEAK  5(2Q33.3) WILD-TYPE 
                           16                           145 
[1] "Del Peak  6(2q37.2) mutation analysis"
[1] 3
  DEL PEAK  6(2Q37.2) MUTATED DEL PEAK  6(2Q37.2) WILD-TYPE 
                           22                           139 
  DEL PEAK  6(2Q37.2) MUTATED DEL PEAK  6(2Q37.2) WILD-TYPE 
                           22                           139 
[1] "Del Peak  7(3p26.1) mutation analysis"
[1] 3
  DEL PEAK  7(3P26.1) MUTATED DEL PEAK  7(3P26.1) WILD-TYPE 
                           38                           123 
  DEL PEAK  7(3P26.1) MUTATED DEL PEAK  7(3P26.1) WILD-TYPE 
                           38                           123 
[1] "Del Peak  8(3p14.2) mutation analysis"
[1] 3
  DEL PEAK  8(3P14.2) MUTATED DEL PEAK  8(3P14.2) WILD-TYPE 
                           51                           110 
  DEL PEAK  8(3P14.2) MUTATED DEL PEAK  8(3P14.2) WILD-TYPE 
                           51                           110 
[1] "Del Peak  9(3q26.31) mutation analysis"
[1] 3
  DEL PEAK  9(3Q26.31) MUTATED DEL PEAK  9(3Q26.31) WILD-TYPE 
                            13                            148 
  DEL PEAK  9(3Q26.31) MUTATED DEL PEAK  9(3Q26.31) WILD-TYPE 
                            13                            148 
[1] "Del Peak 10(4p16.3) mutation analysis"
[1] 3
  DEL PEAK 10(4P16.3) MUTATED DEL PEAK 10(4P16.3) WILD-TYPE 
                           49                           112 
  DEL PEAK 10(4P16.3) MUTATED DEL PEAK 10(4P16.3) WILD-TYPE 
                           49                           112 
[1] "Del Peak 11(4q22.1) mutation analysis"
[1] 3
  DEL PEAK 11(4Q22.1) MUTATED DEL PEAK 11(4Q22.1) WILD-TYPE 
                           60                           101 
  DEL PEAK 11(4Q22.1) MUTATED DEL PEAK 11(4Q22.1) WILD-TYPE 
                           60                           101 
[1] "Del Peak 12(4q35.1) mutation analysis"
[1] 3
  DEL PEAK 12(4Q35.1) MUTATED DEL PEAK 12(4Q35.1) WILD-TYPE 
                           59                           102 
  DEL PEAK 12(4Q35.1) MUTATED DEL PEAK 12(4Q35.1) WILD-TYPE 
                           59                           102 
[1] "Del Peak 13(5q11.2) mutation analysis"
[1] 3
  DEL PEAK 13(5Q11.2) MUTATED DEL PEAK 13(5Q11.2) WILD-TYPE 
                           45                           116 
  DEL PEAK 13(5Q11.2) MUTATED DEL PEAK 13(5Q11.2) WILD-TYPE 
                           45                           116 
[1] "Del Peak 14(6p25.3) mutation analysis"
[1] 3
  DEL PEAK 14(6P25.3) MUTATED DEL PEAK 14(6P25.3) WILD-TYPE 
                           34                           127 
  DEL PEAK 14(6P25.3) MUTATED DEL PEAK 14(6P25.3) WILD-TYPE 
                           34                           127 
[1] "Del Peak 15(6q26) mutation analysis"
[1] 3
  DEL PEAK 15(6Q26) MUTATED DEL PEAK 15(6Q26) WILD-TYPE 
                         35                         126 
  DEL PEAK 15(6Q26) MUTATED DEL PEAK 15(6Q26) WILD-TYPE 
                         35                         126 
[1] "Del Peak 16(6q27) mutation analysis"
[1] 3
  DEL PEAK 16(6Q27) MUTATED DEL PEAK 16(6Q27) WILD-TYPE 
                         34                         127 
  DEL PEAK 16(6Q27) MUTATED DEL PEAK 16(6Q27) WILD-TYPE 
                         34                         127 
[1] "Del Peak 17(7q31.1) mutation analysis"
[1] 3
  DEL PEAK 17(7Q31.1) MUTATED DEL PEAK 17(7Q31.1) WILD-TYPE 
                           19                           142 
  DEL PEAK 17(7Q31.1) MUTATED DEL PEAK 17(7Q31.1) WILD-TYPE 
                           19                           142 
[1] "Del Peak 18(7q36.3) mutation analysis"
[1] 3
  DEL PEAK 18(7Q36.3) MUTATED DEL PEAK 18(7Q36.3) WILD-TYPE 
                           29                           132 
  DEL PEAK 18(7Q36.3) MUTATED DEL PEAK 18(7Q36.3) WILD-TYPE 
                           29                           132 
[1] "Del Peak 19(8p23.2) mutation analysis"
[1] 3
  DEL PEAK 19(8P23.2) MUTATED DEL PEAK 19(8P23.2) WILD-TYPE 
                           40                           121 
  DEL PEAK 19(8P23.2) MUTATED DEL PEAK 19(8P23.2) WILD-TYPE 
                           40                           121 
[1] "Del Peak 20(9p23) mutation analysis"
[1] 3
  DEL PEAK 20(9P23) MUTATED DEL PEAK 20(9P23) WILD-TYPE 
                         63                          98 
  DEL PEAK 20(9P23) MUTATED DEL PEAK 20(9P23) WILD-TYPE 
                         63                          98 
[1] "Del Peak 21(9p21.3) mutation analysis"
[1] 3
  DEL PEAK 21(9P21.3) MUTATED DEL PEAK 21(9P21.3) WILD-TYPE 
                           59                           102 
  DEL PEAK 21(9P21.3) MUTATED DEL PEAK 21(9P21.3) WILD-TYPE 
                           59                           102 
[1] "Del Peak 22(9q21.11) mutation analysis"
[1] 3
  DEL PEAK 22(9Q21.11) MUTATED DEL PEAK 22(9Q21.11) WILD-TYPE 
                            31                            130 
  DEL PEAK 22(9Q21.11) MUTATED DEL PEAK 22(9Q21.11) WILD-TYPE 
                            31                            130 
[1] "Del Peak 23(10p14) mutation analysis"
[1] 3
  DEL PEAK 23(10P14) MUTATED DEL PEAK 23(10P14) WILD-TYPE 
                          21                          140 
  DEL PEAK 23(10P14) MUTATED DEL PEAK 23(10P14) WILD-TYPE 
                          21                          140 
[1] "Del Peak 24(10q22.3) mutation analysis"
[1] 3
  DEL PEAK 24(10Q22.3) MUTATED DEL PEAK 24(10Q22.3) WILD-TYPE 
                            24                            137 
  DEL PEAK 24(10Q22.3) MUTATED DEL PEAK 24(10Q22.3) WILD-TYPE 
                            24                            137 
[1] "Del Peak 25(10q23.31) mutation analysis"
[1] 3
  DEL PEAK 25(10Q23.31) MUTATED DEL PEAK 25(10Q23.31) WILD-TYPE 
                             37                             124 
  DEL PEAK 25(10Q23.31) MUTATED DEL PEAK 25(10Q23.31) WILD-TYPE 
                             37                             124 
[1] "Del Peak 26(11p15.5) mutation analysis"
[1] 3
  DEL PEAK 26(11P15.5) MUTATED DEL PEAK 26(11P15.5) WILD-TYPE 
                            37                            124 
  DEL PEAK 26(11P15.5) MUTATED DEL PEAK 26(11P15.5) WILD-TYPE 
                            37                            124 
[1] "Del Peak 27(11q23.2) mutation analysis"
[1] 3
  DEL PEAK 27(11Q23.2) MUTATED DEL PEAK 27(11Q23.2) WILD-TYPE 
                            34                            127 
  DEL PEAK 27(11Q23.2) MUTATED DEL PEAK 27(11Q23.2) WILD-TYPE 
                            34                            127 
[1] "Del Peak 28(12p13.2) mutation analysis"
[1] 3
  DEL PEAK 28(12P13.2) MUTATED DEL PEAK 28(12P13.2) WILD-TYPE 
                            24                            137 
  DEL PEAK 28(12P13.2) MUTATED DEL PEAK 28(12P13.2) WILD-TYPE 
                            24                            137 
[1] "Del Peak 29(14q21.1) mutation analysis"
[1] 3
  DEL PEAK 29(14Q21.1) MUTATED DEL PEAK 29(14Q21.1) WILD-TYPE 
                            36                            125 
  DEL PEAK 29(14Q21.1) MUTATED DEL PEAK 29(14Q21.1) WILD-TYPE 
                            36                            125 
[1] "Del Peak 30(14q32.33) mutation analysis"
[1] 3
  DEL PEAK 30(14Q32.33) MUTATED DEL PEAK 30(14Q32.33) WILD-TYPE 
                             40                             121 
  DEL PEAK 30(14Q32.33) MUTATED DEL PEAK 30(14Q32.33) WILD-TYPE 
                             40                             121 
[1] "Del Peak 31(15q11.2) mutation analysis"
[1] 3
  DEL PEAK 31(15Q11.2) MUTATED DEL PEAK 31(15Q11.2) WILD-TYPE 
                            39                            122 
  DEL PEAK 31(15Q11.2) MUTATED DEL PEAK 31(15Q11.2) WILD-TYPE 
                            39                            122 
[1] "Del Peak 32(15q15.1) mutation analysis"
[1] 3
  DEL PEAK 32(15Q15.1) MUTATED DEL PEAK 32(15Q15.1) WILD-TYPE 
                            40                            121 
  DEL PEAK 32(15Q15.1) MUTATED DEL PEAK 32(15Q15.1) WILD-TYPE 
                            40                            121 
[1] "Del Peak 33(16p13.3) mutation analysis"
[1] 3
  DEL PEAK 33(16P13.3) MUTATED DEL PEAK 33(16P13.3) WILD-TYPE 
                            20                            141 
  DEL PEAK 33(16P13.3) MUTATED DEL PEAK 33(16P13.3) WILD-TYPE 
                            20                            141 
[1] "Del Peak 34(16q23.1) mutation analysis"
[1] 3
  DEL PEAK 34(16Q23.1) MUTATED DEL PEAK 34(16Q23.1) WILD-TYPE 
                            56                            105 
  DEL PEAK 34(16Q23.1) MUTATED DEL PEAK 34(16Q23.1) WILD-TYPE 
                            56                            105 
[1] "Del Peak 35(17p12) mutation analysis"
[1] 3
  DEL PEAK 35(17P12) MUTATED DEL PEAK 35(17P12) WILD-TYPE 
                          55                          106 
  DEL PEAK 35(17P12) MUTATED DEL PEAK 35(17P12) WILD-TYPE 
                          55                          106 
[1] "Del Peak 36(17q24.3) mutation analysis"
[1] 3
  DEL PEAK 36(17Q24.3) MUTATED DEL PEAK 36(17Q24.3) WILD-TYPE 
                            23                            138 
  DEL PEAK 36(17Q24.3) MUTATED DEL PEAK 36(17Q24.3) WILD-TYPE 
                            23                            138 
[1] "Del Peak 37(18q21.2) mutation analysis"
[1] 3
  DEL PEAK 37(18Q21.2) MUTATED DEL PEAK 37(18Q21.2) WILD-TYPE 
                            63                             98 
  DEL PEAK 37(18Q21.2) MUTATED DEL PEAK 37(18Q21.2) WILD-TYPE 
                            63                             98 
[1] "Del Peak 38(18q22.3) mutation analysis"
[1] 3
  DEL PEAK 38(18Q22.3) MUTATED DEL PEAK 38(18Q22.3) WILD-TYPE 
                            59                            102 
  DEL PEAK 38(18Q22.3) MUTATED DEL PEAK 38(18Q22.3) WILD-TYPE 
                            59                            102 
[1] "Del Peak 39(19p13.3) mutation analysis"
[1] 3
  DEL PEAK 39(19P13.3) MUTATED DEL PEAK 39(19P13.3) WILD-TYPE 
                            49                            112 
  DEL PEAK 39(19P13.3) MUTATED DEL PEAK 39(19P13.3) WILD-TYPE 
                            49                            112 
[1] "Del Peak 40(19q13.11) mutation analysis"
[1] 3
  DEL PEAK 40(19Q13.11) MUTATED DEL PEAK 40(19Q13.11) WILD-TYPE 
                             21                             140 
  DEL PEAK 40(19Q13.11) MUTATED DEL PEAK 40(19Q13.11) WILD-TYPE 
                             21                             140 
[1] "Del Peak 41(20p12.1) mutation analysis"
[1] 3
  DEL PEAK 41(20P12.1) MUTATED DEL PEAK 41(20P12.1) WILD-TYPE 
                            24                            137 
  DEL PEAK 41(20P12.1) MUTATED DEL PEAK 41(20P12.1) WILD-TYPE 
                            24                            137 
[1] "Del Peak 42(21q11.2) mutation analysis"
[1] 3
  DEL PEAK 42(21Q11.2) MUTATED DEL PEAK 42(21Q11.2) WILD-TYPE 
                            50                            111 
  DEL PEAK 42(21Q11.2) MUTATED DEL PEAK 42(21Q11.2) WILD-TYPE 
                            50                            111 
[1] "Del Peak 43(22q13.31) mutation analysis"
[1] 3
  DEL PEAK 43(22Q13.31) MUTATED DEL PEAK 43(22Q13.31) WILD-TYPE 
                             49                             112 
  DEL PEAK 43(22Q13.31) MUTATED DEL PEAK 43(22Q13.31) WILD-TYPE 
                             49                             112 
[1] "Del Peak 44(Xp22.2) mutation analysis"
[1] 3
  DEL PEAK 44(XP22.2) MUTATED DEL PEAK 44(XP22.2) WILD-TYPE 
                           27                           134 
  DEL PEAK 44(XP22.2) MUTATED DEL PEAK 44(XP22.2) WILD-TYPE 
                           27                           134 
[1] "Del Peak 45(Xp21.1) mutation analysis"
[1] 3
  DEL PEAK 45(XP21.1) MUTATED DEL PEAK 45(XP21.1) WILD-TYPE 
                           27                           134 
  DEL PEAK 45(XP21.1) MUTATED DEL PEAK 45(XP21.1) WILD-TYPE 
                           27                           134 
[1] "Del Peak 46(Xq21.33) mutation analysis"
[1] 3
  DEL PEAK 46(XQ21.33) MUTATED DEL PEAK 46(XQ21.33) WILD-TYPE 
                            21                            140 
  DEL PEAK 46(XQ21.33) MUTATED DEL PEAK 46(XQ21.33) WILD-TYPE 
                            21                            140 
[1] "data2feature, selection=ALL"
 [1] "YEARSTOBIRTH"                          
 [2] "DAYSTODEATH"                           
 [3] "DAYSTOLASTFOLLOWUP"                    
 [4] "VITALSTATUS"                           
 [5] "DCCUPLOADDATE"                         
 [6] "PRIMARYSITEOFDESEASE"                  
 [7] "GENDER"                                
 [8] "DATEOFINITIALPATHOLOGICDIAGNOSIS"      
 [9] "HISTOLOGICALTYPE"                      
[10] "PATHOLOGICSPREAD(PT)"                  
[11] "PATHOLOGICSPREAD(PN)"                  
[12] "PATHOLOGICSPREAD(M)"                   
[13] "TUMORSTAGE"                            
[14] "RADIATIONS.RADIATION.REGIMENINDICATION"
[15] "BATCHNUMBER"                           

Input Data has 15 rows and 161 columns.

[1] "Batch" "15"   
[1] "Last Follow UP"
TCGA-B7-5816 TCGA-B7-5818 TCGA-BR-4183 TCGA-BR-4184 TCGA-BR-4187 TCGA-BR-4188 
         171            3           NA           NA           NA           NA 
TCGA-BR-4191 TCGA-BR-4201 TCGA-BR-4253 TCGA-BR-4255 TCGA-BR-4256 TCGA-BR-4257 
          NA           NA           NA           NA           NA           NA 
TCGA-BR-4267 TCGA-BR-4279 TCGA-BR-4280 TCGA-BR-4292 TCGA-BR-4294 TCGA-BR-4357 
          NA           NA           NA           NA           NA           NA 
TCGA-BR-4361 TCGA-BR-4362 TCGA-BR-4363 TCGA-BR-4366 TCGA-BR-4367 TCGA-BR-4368 
          NA           NA           NA           NA           NA           NA 
TCGA-BR-4369 TCGA-BR-4370 TCGA-BR-4371 TCGA-BR-6452 TCGA-BR-6453 TCGA-BR-6454 
          NA           NA           NA           29           NA           NA 
TCGA-BR-6455 TCGA-BR-6456 TCGA-BR-6457 TCGA-BR-6458 TCGA-BR-6563 TCGA-BR-6564 
          43           NA           41           41           26           25 
TCGA-BR-6565 TCGA-BR-6566 TCGA-BR-6705 TCGA-BR-6706 TCGA-BR-6707 TCGA-BR-6709 
          19           19           52           66           30           37 
TCGA-BR-6710 TCGA-BR-6801 TCGA-BR-6802 TCGA-BR-6803 TCGA-BR-6852 TCGA-BR-7196 
          20           34           23           20            8           37 
TCGA-BR-7197 TCGA-BR-7703 TCGA-BR-7704 TCGA-BR-7707 TCGA-BR-7715 TCGA-BR-7716 
          45           14           38            4           32           25 
TCGA-BR-7717 TCGA-BR-7722 TCGA-BR-7723 TCGA-BR-7851 TCGA-BR-7901 TCGA-BR-7957 
          21            5          138           30           29           21 
TCGA-BR-7958 TCGA-BR-7959 TCGA-BR-8059 TCGA-BR-8060 TCGA-BR-8077 TCGA-BR-8078 
           5           33           25           40           21           29 
TCGA-BR-8080 TCGA-BR-8081 TCGA-BR-8284 TCGA-BR-8285 TCGA-BR-8286 TCGA-BR-8289 
          15           14           22            8           13            8 
TCGA-BR-8291 TCGA-BR-8295 TCGA-BR-8296 TCGA-BR-8297 TCGA-CD-5798 TCGA-CD-5799 
          36           47           45           23           25           21 
TCGA-CD-5800 TCGA-CD-5801 TCGA-CD-5802 TCGA-CD-5803 TCGA-CD-5804 TCGA-CG-4300 
          11           15            9            2           NA          609 
TCGA-CG-4301 TCGA-CG-4304 TCGA-CG-4305 TCGA-CG-4306 TCGA-CG-4436 TCGA-CG-4437 
          92          822          485           31         1611          245 
TCGA-CG-4438 TCGA-CG-4440 TCGA-CG-4441 TCGA-CG-4442 TCGA-CG-4443 TCGA-CG-4444 
        1644          122          426           NA          912         1431 
TCGA-CG-4449 TCGA-CG-4455 TCGA-CG-4460 TCGA-CG-4462 TCGA-CG-4465 TCGA-CG-4466 
         580          366          669           31          273          576 
TCGA-CG-4469 TCGA-CG-4472 TCGA-CG-4474 TCGA-CG-4475 TCGA-CG-4476 TCGA-CG-4477 
         215          365           31           NA           NA           31 
TCGA-CG-5716 TCGA-CG-5717 TCGA-CG-5718 TCGA-CG-5719 TCGA-CG-5720 TCGA-CG-5721 
          31          211           31           31           30          182 
TCGA-CG-5722 TCGA-CG-5723 TCGA-CG-5724 TCGA-CG-5725 TCGA-CG-5726 TCGA-CG-5727 
          29         2131          366          457          881          944 
TCGA-CG-5728 TCGA-CG-5730 TCGA-CG-5732 TCGA-CG-5733 TCGA-CG-5734 TCGA-D7-5577 
        1980          122         1674          641          243          263 
TCGA-D7-5578 TCGA-D7-5579 TCGA-D7-6518 TCGA-D7-6519 TCGA-D7-6520 TCGA-D7-6521 
         109          138          298          476          293          249 
TCGA-D7-6522 TCGA-D7-6524 TCGA-D7-6525 TCGA-D7-6526 TCGA-D7-6527 TCGA-D7-6528 
         210           21          181          201          126           51 
TCGA-D7-6815 TCGA-D7-6817 TCGA-D7-6818 TCGA-D7-6820 TCGA-D7-6822 TCGA-EQ-5647 
         111          143          123           89          130           19 
TCGA-EQ-8122 TCGA-F1-6177 TCGA-F1-6874 TCGA-F1-6875 TCGA-FP-7735 TCGA-FP-7829 
         237          199           61           NA           12            6 
TCGA-FP-7916 TCGA-FP-7998 TCGA-HF-7131 TCGA-HF-7132 TCGA-HF-7133 TCGA-HF-7134 
          92          109           NA           NA           NA           NA 
TCGA-HF-7136 TCGA-HJ-7597 TCGA-IN-7806 TCGA-IN-7808 TCGA-IP-7968 
          NA           NA          209          108           77 
Variable 1:'AGE':	nDistinctValues=44,	numeric=TRUE,	binary=FALSE,	exclude=FALSE.
Variable 2:'DAYSTODEATH':	nDistinctValues=16,	numeric=TRUE,	binary=FALSE,	exclude=TRUE.
Variable 3:'DAYSTOLASTFOLLOWUP':	nDistinctValues=88,	numeric=TRUE,	binary=FALSE,	exclude=TRUE.
Variable 4:'VITALSTATUS':	nDistinctValues=2,	numeric=TRUE,	binary=TRUE,	exclude=FALSE.
Variable 5:'DCCUPLOADDAY':	nDistinctValues=5,	numeric=FALSE,	binary=FALSE,	exclude=TRUE.
Variable 6:'PRIMARY.SITE.OF.DISEASE':	nDistinctValues=1,	numeric=FALSE,	binary=FALSE,	exclude=TRUE.
Variable 7:'GENDER':	nDistinctValues=2,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 8:'DAYOFINITIALPATHOLOGICDIAGNOSIS':	nDistinctValues=11,	numeric=TRUE,	binary=FALSE,	exclude=TRUE.
Variable 9:'HISTOLOGICAL.TYPE':	nDistinctValues=7,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 10:'PATHOLOGY.T':	nDistinctValues=11,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 11:'PATHOLOGY.N':	nDistinctValues=6,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 12:'PATHOLOGICSPREAD(M)':	nDistinctValues=3,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 13:'TUMOR.STAGE':	nDistinctValues=11,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 14:'RADIATIONS.RADIATION.REGIMENINDICATION':	nDistinctValues=2,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 15:'BATCH.NUMBER':	nDistinctValues=9,	numeric=FALSE,	binary=FALSE,	exclude=TRUE.
[1] "rownames(nsurv.mat)"
[1] "AGE"                                   
[2] "GENDER"                                
[3] "HISTOLOGICAL.TYPE"                     
[4] "PATHOLOGY.T"                           
[5] "PATHOLOGY.N"                           
[6] "PATHOLOGICSPREAD(M)"                   
[7] "TUMOR.STAGE"                           
[8] "RADIATIONS.RADIATION.REGIMENINDICATION"
[1] "TUMOR.?STAGE" "7"           
[1] "stage2"
vv
 1  2  3  4 
25 43 48 29 
[1] "TUMOR.?GRADE"
[1] "PATHOLOGY.T" "4"          
[1] "PATHOLOGY.N" "5"          
Output Data has 161 columns, 1 survival variables, and 8 non-survival variables.
AGE, nv=44, binary=FALSE, numeric=TRUE
GENDER, nv=2, binary=FALSE, numeric=FALSE
HISTOLOGICAL.TYPE, nv=7, binary=FALSE, numeric=FALSE
PATHOLOGY.T, nv=4, binary=FALSE, numeric=TRUE
[1] "grepl('PATHOLOGY.T',vnm)"
vv
T1 T2 T3 T4 
 6 53 59 33 
[1] "table(vv)"
vv
T1 T2 T3 T4 
 6 53 59 33 
$ClinVariableName
[1] "PATHOLOGY.T"

$Table
vv
T1 T2 T3 T4 
 6 53 59 33 

$nClasses
[1] 4

$ClinVariableType
[1] "multiclass(4)"


T1 T2 T3 T4 
 6 53 59 33 
PATHOLOGY.N, nv=4, binary=FALSE, numeric=TRUE
[1] "grepl('PATHOLOGY.N',vnm)"
vv
N0 N1 N2 N3 
50 57 24 19 
[1] "table(vv)"
vv
N0 N1 N2 N3 
50 57 24 19 
$ClinVariableName
[1] "PATHOLOGY.N"

$Table
vv
N0 N1 N2 N3 
50 57 24 19 

$nClasses
[1] 4

$ClinVariableType
[1] "multiclass(4)"


N0 N1 N2 N3 
50 57 24 19 
PATHOLOGICSPREAD(M), nv=3, binary=FALSE, numeric=FALSE
TUMOR.STAGE, nv=4, binary=FALSE, numeric=TRUE
[1] "grepl('TUMOR.?STAGE',vnm)"
vv
  I  II III  IV 
 25  43  48  29 
[1] "table(vv)"
vv
  I  II III  IV 
 25  43  48  29 
$ClinVariableName
[1] "TUMOR.STAGE"

$Table
vv
  I  II III  IV 
 25  43  48  29 

$nClasses
[1] 4

$ClinVariableType
[1] "multiclass(4)"


  I  II III  IV 
 25  43  48  29 
RADIATIONS.RADIATION.REGIMENINDICATION, nv=2, binary=FALSE, numeric=FALSE

Clustering(1) Variable = Amp Peak  1(1p36.22) mutation analysis
D1V1, survival
                    TCGA-B7-5816                     TCGA-B7-5818 
"AMP PEAK  1(1P36.22) WILD-TYPE" "AMP PEAK  1(1P36.22) WILD-TYPE" 
                    TCGA-BR-6452                     TCGA-BR-6455 
"AMP PEAK  1(1P36.22) WILD-TYPE" "AMP PEAK  1(1P36.22) WILD-TYPE" 
                    TCGA-BR-6457                     TCGA-BR-6458 
"AMP PEAK  1(1P36.22) WILD-TYPE" "AMP PEAK  1(1P36.22) WILD-TYPE" 
                    TCGA-BR-6563                     TCGA-BR-6564 
"AMP PEAK  1(1P36.22) WILD-TYPE" "AMP PEAK  1(1P36.22) WILD-TYPE" 
                    TCGA-BR-6565                     TCGA-BR-6566 
"AMP PEAK  1(1P36.22) WILD-TYPE" "AMP PEAK  1(1P36.22) WILD-TYPE" 
                    TCGA-BR-6705                     TCGA-BR-6706 
"AMP PEAK  1(1P36.22) WILD-TYPE" "AMP PEAK  1(1P36.22) WILD-TYPE" 
                    TCGA-BR-6707                     TCGA-BR-6709 
"AMP PEAK  1(1P36.22) WILD-TYPE" "AMP PEAK  1(1P36.22) WILD-TYPE" 
                    TCGA-BR-6710                     TCGA-BR-6801 
"AMP PEAK  1(1P36.22) WILD-TYPE" "AMP PEAK  1(1P36.22) WILD-TYPE" 
                    TCGA-BR-6802                     TCGA-BR-6803 
"AMP PEAK  1(1P36.22) WILD-TYPE" "AMP PEAK  1(1P36.22) WILD-TYPE" 
                    TCGA-BR-6852                     TCGA-BR-7196 
"AMP PEAK  1(1P36.22) WILD-TYPE" "AMP PEAK  1(1P36.22) WILD-TYPE" 
                    TCGA-BR-7197                     TCGA-BR-7703 
  "AMP PEAK  1(1P36.22) MUTATED" "AMP PEAK  1(1P36.22) WILD-TYPE" 
                    TCGA-BR-7704                     TCGA-BR-7707 
"AMP PEAK  1(1P36.22) WILD-TYPE" "AMP PEAK  1(1P36.22) WILD-TYPE" 
                    TCGA-BR-7715                     TCGA-BR-7716 
"AMP PEAK  1(1P36.22) WILD-TYPE" "AMP PEAK  1(1P36.22) WILD-TYPE" 
                    TCGA-BR-7717                     TCGA-BR-7722 
"AMP PEAK  1(1P36.22) WILD-TYPE" "AMP PEAK  1(1P36.22) WILD-TYPE" 
                    TCGA-BR-7723                     TCGA-BR-7851 
"AMP PEAK  1(1P36.22) WILD-TYPE" "AMP PEAK  1(1P36.22) WILD-TYPE" 
                    TCGA-BR-7901                     TCGA-BR-7957 
  "AMP PEAK  1(1P36.22) MUTATED" "AMP PEAK  1(1P36.22) WILD-TYPE" 
                    TCGA-BR-7958                     TCGA-BR-7959 
"AMP PEAK  1(1P36.22) WILD-TYPE" "AMP PEAK  1(1P36.22) WILD-TYPE" 
                    TCGA-BR-8059                     TCGA-BR-8060 
"AMP PEAK  1(1P36.22) WILD-TYPE" "AMP PEAK  1(1P36.22) WILD-TYPE" 
                    TCGA-BR-8077                     TCGA-BR-8078 
"AMP PEAK  1(1P36.22) WILD-TYPE" "AMP PEAK  1(1P36.22) WILD-TYPE" 
                    TCGA-BR-8080                     TCGA-BR-8081 
"AMP PEAK  1(1P36.22) WILD-TYPE" "AMP PEAK  1(1P36.22) WILD-TYPE" 
                    TCGA-BR-8284                     TCGA-BR-8285 
"AMP PEAK  1(1P36.22) WILD-TYPE" "AMP PEAK  1(1P36.22) WILD-TYPE" 
                    TCGA-BR-8286                     TCGA-BR-8289 
"AMP PEAK  1(1P36.22) WILD-TYPE" "AMP PEAK  1(1P36.22) WILD-TYPE" 
                    TCGA-BR-8291                     TCGA-BR-8295 
"AMP PEAK  1(1P36.22) WILD-TYPE" "AMP PEAK  1(1P36.22) WILD-TYPE" 
                    TCGA-BR-8296                     TCGA-BR-8297 
"AMP PEAK  1(1P36.22) WILD-TYPE" "AMP PEAK  1(1P36.22) WILD-TYPE" 
                    TCGA-CD-5798                     TCGA-CD-5799 
"AMP PEAK  1(1P36.22) WILD-TYPE"   "AMP PEAK  1(1P36.22) MUTATED" 
                    TCGA-CD-5800                     TCGA-CD-5801 
"AMP PEAK  1(1P36.22) WILD-TYPE" "AMP PEAK  1(1P36.22) WILD-TYPE" 
                    TCGA-CD-5802                     TCGA-CD-5803 
  "AMP PEAK  1(1P36.22) MUTATED" "AMP PEAK  1(1P36.22) WILD-TYPE" 
                    TCGA-CG-4300                     TCGA-CG-4301 
"AMP PEAK  1(1P36.22) WILD-TYPE" "AMP PEAK  1(1P36.22) WILD-TYPE" 
                    TCGA-CG-4304                     TCGA-CG-4305 
"AMP PEAK  1(1P36.22) WILD-TYPE" "AMP PEAK  1(1P36.22) WILD-TYPE" 
                    TCGA-CG-4306                     TCGA-CG-4436 
"AMP PEAK  1(1P36.22) WILD-TYPE" "AMP PEAK  1(1P36.22) WILD-TYPE" 
                    TCGA-CG-4437                     TCGA-CG-4438 
"AMP PEAK  1(1P36.22) WILD-TYPE" "AMP PEAK  1(1P36.22) WILD-TYPE" 
                    TCGA-CG-4440                     TCGA-CG-4441 
"AMP PEAK  1(1P36.22) WILD-TYPE" "AMP PEAK  1(1P36.22) WILD-TYPE" 
                    TCGA-CG-4443                     TCGA-CG-4444 
  "AMP PEAK  1(1P36.22) MUTATED"   "AMP PEAK  1(1P36.22) MUTATED" 
                    TCGA-CG-4449                     TCGA-CG-4455 
  "AMP PEAK  1(1P36.22) MUTATED" "AMP PEAK  1(1P36.22) WILD-TYPE" 
                    TCGA-CG-4460                     TCGA-CG-4462 
"AMP PEAK  1(1P36.22) WILD-TYPE" "AMP PEAK  1(1P36.22) WILD-TYPE" 
                    TCGA-CG-4465                     TCGA-CG-4466 
"AMP PEAK  1(1P36.22) WILD-TYPE" "AMP PEAK  1(1P36.22) WILD-TYPE" 
                    TCGA-CG-4469                     TCGA-CG-4472 
"AMP PEAK  1(1P36.22) WILD-TYPE" "AMP PEAK  1(1P36.22) WILD-TYPE" 
                    TCGA-CG-4474                     TCGA-CG-4477 
"AMP PEAK  1(1P36.22) WILD-TYPE" "AMP PEAK  1(1P36.22) WILD-TYPE" 
                    TCGA-CG-5716                     TCGA-CG-5717 
"AMP PEAK  1(1P36.22) WILD-TYPE" "AMP PEAK  1(1P36.22) WILD-TYPE" 
                    TCGA-CG-5718                     TCGA-CG-5719 
  "AMP PEAK  1(1P36.22) MUTATED" "AMP PEAK  1(1P36.22) WILD-TYPE" 
                    TCGA-CG-5720                     TCGA-CG-5721 
"AMP PEAK  1(1P36.22) WILD-TYPE" "AMP PEAK  1(1P36.22) WILD-TYPE" 
                    TCGA-CG-5722                     TCGA-CG-5723 
"AMP PEAK  1(1P36.22) WILD-TYPE" "AMP PEAK  1(1P36.22) WILD-TYPE" 
                    TCGA-CG-5724                     TCGA-CG-5725 
"AMP PEAK  1(1P36.22) WILD-TYPE" "AMP PEAK  1(1P36.22) WILD-TYPE" 
                    TCGA-CG-5726                     TCGA-CG-5727 
"AMP PEAK  1(1P36.22) WILD-TYPE" "AMP PEAK  1(1P36.22) WILD-TYPE" 
                    TCGA-CG-5728                     TCGA-CG-5730 
"AMP PEAK  1(1P36.22) WILD-TYPE" "AMP PEAK  1(1P36.22) WILD-TYPE" 
                    TCGA-CG-5732                     TCGA-CG-5733 
  "AMP PEAK  1(1P36.22) MUTATED" "AMP PEAK  1(1P36.22) WILD-TYPE" 
                    TCGA-CG-5734                     TCGA-D7-5577 
"AMP PEAK  1(1P36.22) WILD-TYPE" "AMP PEAK  1(1P36.22) WILD-TYPE" 
                    TCGA-D7-5578                     TCGA-D7-5579 
"AMP PEAK  1(1P36.22) WILD-TYPE" "AMP PEAK  1(1P36.22) WILD-TYPE" 
                    TCGA-D7-6518                     TCGA-D7-6519 
"AMP PEAK  1(1P36.22) WILD-TYPE" "AMP PEAK  1(1P36.22) WILD-TYPE" 
                    TCGA-D7-6520                     TCGA-D7-6521 
"AMP PEAK  1(1P36.22) WILD-TYPE"   "AMP PEAK  1(1P36.22) MUTATED" 
                    TCGA-D7-6522                     TCGA-D7-6524 
"AMP PEAK  1(1P36.22) WILD-TYPE" "AMP PEAK  1(1P36.22) WILD-TYPE" 
                    TCGA-D7-6525                     TCGA-D7-6526 
"AMP PEAK  1(1P36.22) WILD-TYPE" "AMP PEAK  1(1P36.22) WILD-TYPE" 
                    TCGA-D7-6527                     TCGA-D7-6528 
  "AMP PEAK  1(1P36.22) MUTATED"   "AMP PEAK  1(1P36.22) MUTATED" 
                    TCGA-D7-6815                     TCGA-D7-6817 
"AMP PEAK  1(1P36.22) WILD-TYPE" "AMP PEAK  1(1P36.22) WILD-TYPE" 
                    TCGA-D7-6818                     TCGA-D7-6820 
"AMP PEAK  1(1P36.22) WILD-TYPE" "AMP PEAK  1(1P36.22) WILD-TYPE" 
                    TCGA-D7-6822                     TCGA-EQ-5647 
"AMP PEAK  1(1P36.22) WILD-TYPE" "AMP PEAK  1(1P36.22) WILD-TYPE" 
                    TCGA-EQ-8122                     TCGA-F1-6177 
"AMP PEAK  1(1P36.22) WILD-TYPE" "AMP PEAK  1(1P36.22) WILD-TYPE" 
                    TCGA-F1-6874                     TCGA-F1-6875 
"AMP PEAK  1(1P36.22) WILD-TYPE" "AMP PEAK  1(1P36.22) WILD-TYPE" 
                    TCGA-FP-7735                     TCGA-FP-7829 
"AMP PEAK  1(1P36.22) WILD-TYPE"   "AMP PEAK  1(1P36.22) MUTATED" 
                    TCGA-FP-7916                     TCGA-FP-7998 
"AMP PEAK  1(1P36.22) WILD-TYPE" "AMP PEAK  1(1P36.22) WILD-TYPE" 
                    TCGA-HJ-7597                     TCGA-IN-7806 
  "AMP PEAK  1(1P36.22) MUTATED"   "AMP PEAK  1(1P36.22) MUTATED" 
                    TCGA-IN-7808                     TCGA-IP-7968 
  "AMP PEAK  1(1P36.22) MUTATED"   "AMP PEAK  1(1P36.22) MUTATED" 
                    TCGA-B7-5816                     TCGA-B7-5818 
"AMP PEAK  1(1P36.22) WILD-TYPE" "AMP PEAK  1(1P36.22) WILD-TYPE" 
                    TCGA-BR-6452                     TCGA-BR-6455 
"AMP PEAK  1(1P36.22) WILD-TYPE" "AMP PEAK  1(1P36.22) WILD-TYPE" 
                    TCGA-BR-6457                     TCGA-BR-6458 
"AMP PEAK  1(1P36.22) WILD-TYPE" "AMP PEAK  1(1P36.22) WILD-TYPE" 
                    TCGA-BR-6563                     TCGA-BR-6564 
"AMP PEAK  1(1P36.22) WILD-TYPE" "AMP PEAK  1(1P36.22) WILD-TYPE" 
                    TCGA-BR-6565                     TCGA-BR-6566 
"AMP PEAK  1(1P36.22) WILD-TYPE" "AMP PEAK  1(1P36.22) WILD-TYPE" 
                    TCGA-BR-6705                     TCGA-BR-6706 
"AMP PEAK  1(1P36.22) WILD-TYPE" "AMP PEAK  1(1P36.22) WILD-TYPE" 
                    TCGA-BR-6707                     TCGA-BR-6709 
"AMP PEAK  1(1P36.22) WILD-TYPE" "AMP PEAK  1(1P36.22) WILD-TYPE" 
                    TCGA-BR-6710                     TCGA-BR-6801 
"AMP PEAK  1(1P36.22) WILD-TYPE" "AMP PEAK  1(1P36.22) WILD-TYPE" 
                    TCGA-BR-6802                     TCGA-BR-6803 
"AMP PEAK  1(1P36.22) WILD-TYPE" "AMP PEAK  1(1P36.22) WILD-TYPE" 
                    TCGA-BR-6852                     TCGA-BR-7196 
"AMP PEAK  1(1P36.22) WILD-TYPE" "AMP PEAK  1(1P36.22) WILD-TYPE" 
                    TCGA-BR-7197                     TCGA-BR-7703 
  "AMP PEAK  1(1P36.22) MUTATED" "AMP PEAK  1(1P36.22) WILD-TYPE" 
                    TCGA-BR-7704                     TCGA-BR-7707 
"AMP PEAK  1(1P36.22) WILD-TYPE" "AMP PEAK  1(1P36.22) WILD-TYPE" 
                    TCGA-BR-7715                     TCGA-BR-7716 
"AMP PEAK  1(1P36.22) WILD-TYPE" "AMP PEAK  1(1P36.22) WILD-TYPE" 
                    TCGA-BR-7717                     TCGA-BR-7722 
"AMP PEAK  1(1P36.22) WILD-TYPE" "AMP PEAK  1(1P36.22) WILD-TYPE" 
                    TCGA-BR-7723                     TCGA-BR-7851 
"AMP PEAK  1(1P36.22) WILD-TYPE" "AMP PEAK  1(1P36.22) WILD-TYPE" 
                    TCGA-BR-7901                     TCGA-BR-7957 
  "AMP PEAK  1(1P36.22) MUTATED" "AMP PEAK  1(1P36.22) WILD-TYPE" 
                    TCGA-BR-7958                     TCGA-BR-7959 
"AMP PEAK  1(1P36.22) WILD-TYPE" "AMP PEAK  1(1P36.22) WILD-TYPE" 
                    TCGA-BR-8059                     TCGA-BR-8060 
"AMP PEAK  1(1P36.22) WILD-TYPE" "AMP PEAK  1(1P36.22) WILD-TYPE" 
                    TCGA-BR-8077                     TCGA-BR-8078 
"AMP PEAK  1(1P36.22) WILD-TYPE" "AMP PEAK  1(1P36.22) WILD-TYPE" 
                    TCGA-BR-8080                     TCGA-BR-8081 
"AMP PEAK  1(1P36.22) WILD-TYPE" "AMP PEAK  1(1P36.22) WILD-TYPE" 
                    TCGA-BR-8284                     TCGA-BR-8285 
"AMP PEAK  1(1P36.22) WILD-TYPE" "AMP PEAK  1(1P36.22) WILD-TYPE" 
                    TCGA-BR-8286                     TCGA-BR-8289 
"AMP PEAK  1(1P36.22) WILD-TYPE" "AMP PEAK  1(1P36.22) WILD-TYPE" 
                    TCGA-BR-8291                     TCGA-BR-8295 
"AMP PEAK  1(1P36.22) WILD-TYPE" "AMP PEAK  1(1P36.22) WILD-TYPE" 
                    TCGA-BR-8296                     TCGA-BR-8297 
"AMP PEAK  1(1P36.22) WILD-TYPE" "AMP PEAK  1(1P36.22) WILD-TYPE" 
                    TCGA-CD-5798                     TCGA-CD-5799 
"AMP PEAK  1(1P36.22) WILD-TYPE"   "AMP PEAK  1(1P36.22) MUTATED" 
                    TCGA-CD-5800                     TCGA-CD-5801 
"AMP PEAK  1(1P36.22) WILD-TYPE" "AMP PEAK  1(1P36.22) WILD-TYPE" 
                    TCGA-CD-5802                     TCGA-CD-5803 
  "AMP PEAK  1(1P36.22) MUTATED" "AMP PEAK  1(1P36.22) WILD-TYPE" 
                    TCGA-CG-4300                     TCGA-CG-4301 
"AMP PEAK  1(1P36.22) WILD-TYPE" "AMP PEAK  1(1P36.22) WILD-TYPE" 
                    TCGA-CG-4304                     TCGA-CG-4305 
"AMP PEAK  1(1P36.22) WILD-TYPE" "AMP PEAK  1(1P36.22) WILD-TYPE" 
                    TCGA-CG-4306                     TCGA-CG-4436 
"AMP PEAK  1(1P36.22) WILD-TYPE" "AMP PEAK  1(1P36.22) WILD-TYPE" 
                    TCGA-CG-4437                     TCGA-CG-4438 
"AMP PEAK  1(1P36.22) WILD-TYPE" "AMP PEAK  1(1P36.22) WILD-TYPE" 
                    TCGA-CG-4440                     TCGA-CG-4441 
"AMP PEAK  1(1P36.22) WILD-TYPE" "AMP PEAK  1(1P36.22) WILD-TYPE" 
                    TCGA-CG-4443                     TCGA-CG-4444 
  "AMP PEAK  1(1P36.22) MUTATED"   "AMP PEAK  1(1P36.22) MUTATED" 
                    TCGA-CG-4449                     TCGA-CG-4455 
  "AMP PEAK  1(1P36.22) MUTATED" "AMP PEAK  1(1P36.22) WILD-TYPE" 
                    TCGA-CG-4460                     TCGA-CG-4462 
"AMP PEAK  1(1P36.22) WILD-TYPE" "AMP PEAK  1(1P36.22) WILD-TYPE" 
                    TCGA-CG-4465                     TCGA-CG-4466 
"AMP PEAK  1(1P36.22) WILD-TYPE" "AMP PEAK  1(1P36.22) WILD-TYPE" 
                    TCGA-CG-4469                     TCGA-CG-4472 
"AMP PEAK  1(1P36.22) WILD-TYPE" "AMP PEAK  1(1P36.22) WILD-TYPE" 
                    TCGA-CG-4474                     TCGA-CG-4477 
"AMP PEAK  1(1P36.22) WILD-TYPE" "AMP PEAK  1(1P36.22) WILD-TYPE" 
                    TCGA-CG-5716                     TCGA-CG-5717 
"AMP PEAK  1(1P36.22) WILD-TYPE" "AMP PEAK  1(1P36.22) WILD-TYPE" 
                    TCGA-CG-5718                     TCGA-CG-5719 
  "AMP PEAK  1(1P36.22) MUTATED" "AMP PEAK  1(1P36.22) WILD-TYPE" 
                    TCGA-CG-5720                     TCGA-CG-5721 
"AMP PEAK  1(1P36.22) WILD-TYPE" "AMP PEAK  1(1P36.22) WILD-TYPE" 
                    TCGA-CG-5722                     TCGA-CG-5723 
"AMP PEAK  1(1P36.22) WILD-TYPE" "AMP PEAK  1(1P36.22) WILD-TYPE" 
                    TCGA-CG-5724                     TCGA-CG-5725 
"AMP PEAK  1(1P36.22) WILD-TYPE" "AMP PEAK  1(1P36.22) WILD-TYPE" 
                    TCGA-CG-5726                     TCGA-CG-5727 
"AMP PEAK  1(1P36.22) WILD-TYPE" "AMP PEAK  1(1P36.22) WILD-TYPE" 
                    TCGA-CG-5728                     TCGA-CG-5730 
"AMP PEAK  1(1P36.22) WILD-TYPE" "AMP PEAK  1(1P36.22) WILD-TYPE" 
                    TCGA-CG-5732                     TCGA-CG-5733 
  "AMP PEAK  1(1P36.22) MUTATED" "AMP PEAK  1(1P36.22) WILD-TYPE" 
                    TCGA-CG-5734                     TCGA-D7-5577 
"AMP PEAK  1(1P36.22) WILD-TYPE" "AMP PEAK  1(1P36.22) WILD-TYPE" 
                    TCGA-D7-5578                     TCGA-D7-5579 
"AMP PEAK  1(1P36.22) WILD-TYPE" "AMP PEAK  1(1P36.22) WILD-TYPE" 
                    TCGA-D7-6518                     TCGA-D7-6519 
"AMP PEAK  1(1P36.22) WILD-TYPE" "AMP PEAK  1(1P36.22) WILD-TYPE" 
                    TCGA-D7-6520                     TCGA-D7-6521 
"AMP PEAK  1(1P36.22) WILD-TYPE"   "AMP PEAK  1(1P36.22) MUTATED" 
                    TCGA-D7-6522                     TCGA-D7-6524 
"AMP PEAK  1(1P36.22) WILD-TYPE" "AMP PEAK  1(1P36.22) WILD-TYPE" 
                    TCGA-D7-6525                     TCGA-D7-6526 
"AMP PEAK  1(1P36.22) WILD-TYPE" "AMP PEAK  1(1P36.22) WILD-TYPE" 
                    TCGA-D7-6527                     TCGA-D7-6528 
  "AMP PEAK  1(1P36.22) MUTATED"   "AMP PEAK  1(1P36.22) MUTATED" 
                    TCGA-D7-6815                     TCGA-D7-6817 
"AMP PEAK  1(1P36.22) WILD-TYPE" "AMP PEAK  1(1P36.22) WILD-TYPE" 
                    TCGA-D7-6818                     TCGA-D7-6820 
"AMP PEAK  1(1P36.22) WILD-TYPE" "AMP PEAK  1(1P36.22) WILD-TYPE" 
                    TCGA-D7-6822                     TCGA-EQ-5647 
"AMP PEAK  1(1P36.22) WILD-TYPE" "AMP PEAK  1(1P36.22) WILD-TYPE" 
                    TCGA-EQ-8122                     TCGA-F1-6177 
"AMP PEAK  1(1P36.22) WILD-TYPE" "AMP PEAK  1(1P36.22) WILD-TYPE" 
                    TCGA-F1-6874                     TCGA-F1-6875 
"AMP PEAK  1(1P36.22) WILD-TYPE" "AMP PEAK  1(1P36.22) WILD-TYPE" 
                    TCGA-FP-7735                     TCGA-FP-7829 
"AMP PEAK  1(1P36.22) WILD-TYPE"   "AMP PEAK  1(1P36.22) MUTATED" 
                    TCGA-FP-7916                     TCGA-FP-7998 
"AMP PEAK  1(1P36.22) WILD-TYPE" "AMP PEAK  1(1P36.22) WILD-TYPE" 
                    TCGA-HJ-7597                     TCGA-IN-7806 
  "AMP PEAK  1(1P36.22) MUTATED"   "AMP PEAK  1(1P36.22) MUTATED" 
                    TCGA-IN-7808                     TCGA-IP-7968 
  "AMP PEAK  1(1P36.22) MUTATED"   "AMP PEAK  1(1P36.22) MUTATED" 
                    TCGA-B7-5816                     TCGA-B7-5818 
"AMP PEAK  1(1P36.22) WILD-TYPE" "AMP PEAK  1(1P36.22) WILD-TYPE" 
                    TCGA-BR-6452                     TCGA-BR-6455 
"AMP PEAK  1(1P36.22) WILD-TYPE" "AMP PEAK  1(1P36.22) WILD-TYPE" 
                    TCGA-BR-6457                     TCGA-BR-6458 
"AMP PEAK  1(1P36.22) WILD-TYPE" "AMP PEAK  1(1P36.22) WILD-TYPE" 
                    TCGA-BR-6563                     TCGA-BR-6564 
"AMP PEAK  1(1P36.22) WILD-TYPE" "AMP PEAK  1(1P36.22) WILD-TYPE" 
                    TCGA-BR-6565                     TCGA-BR-6566 
"AMP PEAK  1(1P36.22) WILD-TYPE" "AMP PEAK  1(1P36.22) WILD-TYPE" 
                    TCGA-BR-6705                     TCGA-BR-6706 
"AMP PEAK  1(1P36.22) WILD-TYPE" "AMP PEAK  1(1P36.22) WILD-TYPE" 
                    TCGA-BR-6707                     TCGA-BR-6709 
"AMP PEAK  1(1P36.22) WILD-TYPE" "AMP PEAK  1(1P36.22) WILD-TYPE" 
                    TCGA-BR-6710                     TCGA-BR-6801 
"AMP PEAK  1(1P36.22) WILD-TYPE" "AMP PEAK  1(1P36.22) WILD-TYPE" 
                    TCGA-BR-6802                     TCGA-BR-6803 
"AMP PEAK  1(1P36.22) WILD-TYPE" "AMP PEAK  1(1P36.22) WILD-TYPE" 
                    TCGA-BR-6852                     TCGA-BR-7196 
"AMP PEAK  1(1P36.22) WILD-TYPE" "AMP PEAK  1(1P36.22) WILD-TYPE" 
                    TCGA-BR-7197                     TCGA-BR-7703 
  "AMP PEAK  1(1P36.22) MUTATED" "AMP PEAK  1(1P36.22) WILD-TYPE" 
                    TCGA-BR-7704                     TCGA-BR-7707 
"AMP PEAK  1(1P36.22) WILD-TYPE" "AMP PEAK  1(1P36.22) WILD-TYPE" 
                    TCGA-BR-7715                     TCGA-BR-7716 
"AMP PEAK  1(1P36.22) WILD-TYPE" "AMP PEAK  1(1P36.22) WILD-TYPE" 
                    TCGA-BR-7717                     TCGA-BR-7722 
"AMP PEAK  1(1P36.22) WILD-TYPE" "AMP PEAK  1(1P36.22) WILD-TYPE" 
                    TCGA-BR-7723                     TCGA-BR-7851 
"AMP PEAK  1(1P36.22) WILD-TYPE" "AMP PEAK  1(1P36.22) WILD-TYPE" 
                    TCGA-BR-7901                     TCGA-BR-7957 
  "AMP PEAK  1(1P36.22) MUTATED" "AMP PEAK  1(1P36.22) WILD-TYPE" 
                    TCGA-BR-7958                     TCGA-BR-7959 
"AMP PEAK  1(1P36.22) WILD-TYPE" "AMP PEAK  1(1P36.22) WILD-TYPE" 
                    TCGA-BR-8059                     TCGA-BR-8060 
"AMP PEAK  1(1P36.22) WILD-TYPE" "AMP PEAK  1(1P36.22) WILD-TYPE" 
                    TCGA-BR-8077                     TCGA-BR-8078 
"AMP PEAK  1(1P36.22) WILD-TYPE" "AMP PEAK  1(1P36.22) WILD-TYPE" 
                    TCGA-BR-8080                     TCGA-BR-8081 
"AMP PEAK  1(1P36.22) WILD-TYPE" "AMP PEAK  1(1P36.22) WILD-TYPE" 
                    TCGA-BR-8284                     TCGA-BR-8285 
"AMP PEAK  1(1P36.22) WILD-TYPE" "AMP PEAK  1(1P36.22) WILD-TYPE" 
                    TCGA-BR-8286                     TCGA-BR-8289 
"AMP PEAK  1(1P36.22) WILD-TYPE" "AMP PEAK  1(1P36.22) WILD-TYPE" 
                    TCGA-BR-8291                     TCGA-BR-8295 
"AMP PEAK  1(1P36.22) WILD-TYPE" "AMP PEAK  1(1P36.22) WILD-TYPE" 
                    TCGA-BR-8296                     TCGA-BR-8297 
"AMP PEAK  1(1P36.22) WILD-TYPE" "AMP PEAK  1(1P36.22) WILD-TYPE" 
                    TCGA-CD-5798                     TCGA-CD-5799 
"AMP PEAK  1(1P36.22) WILD-TYPE"   "AMP PEAK  1(1P36.22) MUTATED" 
                    TCGA-CD-5800                     TCGA-CD-5801 
"AMP PEAK  1(1P36.22) WILD-TYPE" "AMP PEAK  1(1P36.22) WILD-TYPE" 
                    TCGA-CD-5802                     TCGA-CD-5803 
  "AMP PEAK  1(1P36.22) MUTATED" "AMP PEAK  1(1P36.22) WILD-TYPE" 
                    TCGA-CG-4300                     TCGA-CG-4301 
"AMP PEAK  1(1P36.22) WILD-TYPE" "AMP PEAK  1(1P36.22) WILD-TYPE" 
                    TCGA-CG-4304                     TCGA-CG-4305 
"AMP PEAK  1(1P36.22) WILD-TYPE" "AMP PEAK  1(1P36.22) WILD-TYPE" 
                    TCGA-CG-4306                     TCGA-CG-4436 
"AMP PEAK  1(1P36.22) WILD-TYPE" "AMP PEAK  1(1P36.22) WILD-TYPE" 
                    TCGA-CG-4437                     TCGA-CG-4438 
"AMP PEAK  1(1P36.22) WILD-TYPE" "AMP PEAK  1(1P36.22) WILD-TYPE" 
                    TCGA-CG-4440                     TCGA-CG-4441 
"AMP PEAK  1(1P36.22) WILD-TYPE" "AMP PEAK  1(1P36.22) WILD-TYPE" 
                    TCGA-CG-4443                     TCGA-CG-4444 
  "AMP PEAK  1(1P36.22) MUTATED"   "AMP PEAK  1(1P36.22) MUTATED" 
                    TCGA-CG-4449                     TCGA-CG-4455 
  "AMP PEAK  1(1P36.22) MUTATED" "AMP PEAK  1(1P36.22) WILD-TYPE" 
                    TCGA-CG-4460                     TCGA-CG-4462 
"AMP PEAK  1(1P36.22) WILD-TYPE" "AMP PEAK  1(1P36.22) WILD-TYPE" 
                    TCGA-CG-4465                     TCGA-CG-4466 
"AMP PEAK  1(1P36.22) WILD-TYPE" "AMP PEAK  1(1P36.22) WILD-TYPE" 
                    TCGA-CG-4469                     TCGA-CG-4472 
"AMP PEAK  1(1P36.22) WILD-TYPE" "AMP PEAK  1(1P36.22) WILD-TYPE" 
                    TCGA-CG-4474                     TCGA-CG-4477 
"AMP PEAK  1(1P36.22) WILD-TYPE" "AMP PEAK  1(1P36.22) WILD-TYPE" 
                    TCGA-CG-5716                     TCGA-CG-5717 
"AMP PEAK  1(1P36.22) WILD-TYPE" "AMP PEAK  1(1P36.22) WILD-TYPE" 
                    TCGA-CG-5718                     TCGA-CG-5719 
  "AMP PEAK  1(1P36.22) MUTATED" "AMP PEAK  1(1P36.22) WILD-TYPE" 
                    TCGA-CG-5720                     TCGA-CG-5721 
"AMP PEAK  1(1P36.22) WILD-TYPE" "AMP PEAK  1(1P36.22) WILD-TYPE" 
                    TCGA-CG-5722                     TCGA-CG-5723 
"AMP PEAK  1(1P36.22) WILD-TYPE" "AMP PEAK  1(1P36.22) WILD-TYPE" 
                    TCGA-CG-5724                     TCGA-CG-5725 
"AMP PEAK  1(1P36.22) WILD-TYPE" "AMP PEAK  1(1P36.22) WILD-TYPE" 
                    TCGA-CG-5726                     TCGA-CG-5727 
"AMP PEAK  1(1P36.22) WILD-TYPE" "AMP PEAK  1(1P36.22) WILD-TYPE" 
                    TCGA-CG-5728                     TCGA-CG-5730 
"AMP PEAK  1(1P36.22) WILD-TYPE" "AMP PEAK  1(1P36.22) WILD-TYPE" 
                    TCGA-CG-5732                     TCGA-CG-5733 
  "AMP PEAK  1(1P36.22) MUTATED" "AMP PEAK  1(1P36.22) WILD-TYPE" 
                    TCGA-CG-5734                     TCGA-D7-5577 
"AMP PEAK  1(1P36.22) WILD-TYPE" "AMP PEAK  1(1P36.22) WILD-TYPE" 
                    TCGA-D7-5578                     TCGA-D7-5579 
"AMP PEAK  1(1P36.22) WILD-TYPE" "AMP PEAK  1(1P36.22) WILD-TYPE" 
                    TCGA-D7-6518                     TCGA-D7-6519 
"AMP PEAK  1(1P36.22) WILD-TYPE" "AMP PEAK  1(1P36.22) WILD-TYPE" 
                    TCGA-D7-6520                     TCGA-D7-6521 
"AMP PEAK  1(1P36.22) WILD-TYPE"   "AMP PEAK  1(1P36.22) MUTATED" 
                    TCGA-D7-6522                     TCGA-D7-6524 
"AMP PEAK  1(1P36.22) WILD-TYPE" "AMP PEAK  1(1P36.22) WILD-TYPE" 
                    TCGA-D7-6525                     TCGA-D7-6526 
"AMP PEAK  1(1P36.22) WILD-TYPE" "AMP PEAK  1(1P36.22) WILD-TYPE" 
                    TCGA-D7-6527                     TCGA-D7-6528 
  "AMP PEAK  1(1P36.22) MUTATED"   "AMP PEAK  1(1P36.22) MUTATED" 
                    TCGA-D7-6815                     TCGA-D7-6817 
"AMP PEAK  1(1P36.22) WILD-TYPE" "AMP PEAK  1(1P36.22) WILD-TYPE" 
                    TCGA-D7-6818                     TCGA-D7-6820 
"AMP PEAK  1(1P36.22) WILD-TYPE" "AMP PEAK  1(1P36.22) WILD-TYPE" 
                    TCGA-D7-6822                     TCGA-EQ-5647 
"AMP PEAK  1(1P36.22) WILD-TYPE" "AMP PEAK  1(1P36.22) WILD-TYPE" 
                    TCGA-EQ-8122                     TCGA-F1-6177 
"AMP PEAK  1(1P36.22) WILD-TYPE" "AMP PEAK  1(1P36.22) WILD-TYPE" 
                    TCGA-F1-6874                     TCGA-F1-6875 
"AMP PEAK  1(1P36.22) WILD-TYPE" "AMP PEAK  1(1P36.22) WILD-TYPE" 
                    TCGA-FP-7735                     TCGA-FP-7829 
"AMP PEAK  1(1P36.22) WILD-TYPE"   "AMP PEAK  1(1P36.22) MUTATED" 
                    TCGA-FP-7916                     TCGA-FP-7998 
"AMP PEAK  1(1P36.22) WILD-TYPE" "AMP PEAK  1(1P36.22) WILD-TYPE" 
                    TCGA-HJ-7597                     TCGA-IN-7806 
  "AMP PEAK  1(1P36.22) MUTATED"   "AMP PEAK  1(1P36.22) MUTATED" 
                    TCGA-IN-7808                     TCGA-IP-7968 
  "AMP PEAK  1(1P36.22) MUTATED"   "AMP PEAK  1(1P36.22) MUTATED" 
[1] "hr=" "4"  
D1V2, continuous
D1V3, binary
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  AMP PEAK  1(1P36.22) MUTATED      4   18
  AMP PEAK  1(1P36.22) WILD-TYPE   61   78
        clus
vv       AMP PEAK  1(1P36.22) MUTATED AMP PEAK  1(1P36.22) WILD-TYPE
  FEMALE                            4                             61
  MALE                             18                             78
D1V4, multiclass
D1V5, multiclass
    clus
vv   AMP PEAK  1(1P36.22) MUTATED AMP PEAK  1(1P36.22) WILD-TYPE
  T1                            1                              5
  T2                            9                             44
  T3                           10                             49
  T4                            1                             32
D1V6, multiclass
    clus
vv   AMP PEAK  1(1P36.22) MUTATED AMP PEAK  1(1P36.22) WILD-TYPE
  N0                            5                             45
  N1                           10                             47
  N2                            3                             21
  N3                            3                             16
D1V7, multiclass
    clus
vv   AMP PEAK  1(1P36.22) MUTATED AMP PEAK  1(1P36.22) WILD-TYPE
  M0                           18                            114
  M1                            1                             17
  MX                            3                              8
D1V8, multiclass
     clus
vv    AMP PEAK  1(1P36.22) MUTATED AMP PEAK  1(1P36.22) WILD-TYPE
  I                              3                             22
  II                             7                             36
  III                            9                             39
  IV                             1                             28
D1V9, binary
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  AMP PEAK  1(1P36.22) MUTATED     21    1
  AMP PEAK  1(1P36.22) WILD-TYPE  135    4
     clus
vv    AMP PEAK  1(1P36.22) MUTATED AMP PEAK  1(1P36.22) WILD-TYPE
  NO                             1                              4
  YES                           21                            135

Clustering(2) Variable = Amp Peak  2(1q21.3) mutation analysis
D2V1, survival
                   TCGA-B7-5816                    TCGA-B7-5818 
"AMP PEAK  2(1Q21.3) WILD-TYPE" "AMP PEAK  2(1Q21.3) WILD-TYPE" 
                   TCGA-BR-6452                    TCGA-BR-6455 
"AMP PEAK  2(1Q21.3) WILD-TYPE" "AMP PEAK  2(1Q21.3) WILD-TYPE" 
                   TCGA-BR-6457                    TCGA-BR-6458 
"AMP PEAK  2(1Q21.3) WILD-TYPE"   "AMP PEAK  2(1Q21.3) MUTATED" 
                   TCGA-BR-6563                    TCGA-BR-6564 
"AMP PEAK  2(1Q21.3) WILD-TYPE" "AMP PEAK  2(1Q21.3) WILD-TYPE" 
                   TCGA-BR-6565                    TCGA-BR-6566 
"AMP PEAK  2(1Q21.3) WILD-TYPE" "AMP PEAK  2(1Q21.3) WILD-TYPE" 
                   TCGA-BR-6705                    TCGA-BR-6706 
  "AMP PEAK  2(1Q21.3) MUTATED" "AMP PEAK  2(1Q21.3) WILD-TYPE" 
                   TCGA-BR-6707                    TCGA-BR-6709 
"AMP PEAK  2(1Q21.3) WILD-TYPE" "AMP PEAK  2(1Q21.3) WILD-TYPE" 
                   TCGA-BR-6710                    TCGA-BR-6801 
"AMP PEAK  2(1Q21.3) WILD-TYPE" "AMP PEAK  2(1Q21.3) WILD-TYPE" 
                   TCGA-BR-6802                    TCGA-BR-6803 
"AMP PEAK  2(1Q21.3) WILD-TYPE" "AMP PEAK  2(1Q21.3) WILD-TYPE" 
                   TCGA-BR-6852                    TCGA-BR-7196 
"AMP PEAK  2(1Q21.3) WILD-TYPE" "AMP PEAK  2(1Q21.3) WILD-TYPE" 
                   TCGA-BR-7197                    TCGA-BR-7703 
  "AMP PEAK  2(1Q21.3) MUTATED" "AMP PEAK  2(1Q21.3) WILD-TYPE" 
                   TCGA-BR-7704                    TCGA-BR-7707 
"AMP PEAK  2(1Q21.3) WILD-TYPE" "AMP PEAK  2(1Q21.3) WILD-TYPE" 
                   TCGA-BR-7715                    TCGA-BR-7716 
"AMP PEAK  2(1Q21.3) WILD-TYPE" "AMP PEAK  2(1Q21.3) WILD-TYPE" 
                   TCGA-BR-7717                    TCGA-BR-7722 
  "AMP PEAK  2(1Q21.3) MUTATED" "AMP PEAK  2(1Q21.3) WILD-TYPE" 
                   TCGA-BR-7723                    TCGA-BR-7851 
  "AMP PEAK  2(1Q21.3) MUTATED" "AMP PEAK  2(1Q21.3) WILD-TYPE" 
                   TCGA-BR-7901                    TCGA-BR-7957 
  "AMP PEAK  2(1Q21.3) MUTATED" "AMP PEAK  2(1Q21.3) WILD-TYPE" 
                   TCGA-BR-7958                    TCGA-BR-7959 
"AMP PEAK  2(1Q21.3) WILD-TYPE" "AMP PEAK  2(1Q21.3) WILD-TYPE" 
                   TCGA-BR-8059                    TCGA-BR-8060 
"AMP PEAK  2(1Q21.3) WILD-TYPE" "AMP PEAK  2(1Q21.3) WILD-TYPE" 
                   TCGA-BR-8077                    TCGA-BR-8078 
"AMP PEAK  2(1Q21.3) WILD-TYPE" "AMP PEAK  2(1Q21.3) WILD-TYPE" 
                   TCGA-BR-8080                    TCGA-BR-8081 
"AMP PEAK  2(1Q21.3) WILD-TYPE" "AMP PEAK  2(1Q21.3) WILD-TYPE" 
                   TCGA-BR-8284                    TCGA-BR-8285 
"AMP PEAK  2(1Q21.3) WILD-TYPE" "AMP PEAK  2(1Q21.3) WILD-TYPE" 
                   TCGA-BR-8286                    TCGA-BR-8289 
"AMP PEAK  2(1Q21.3) WILD-TYPE" "AMP PEAK  2(1Q21.3) WILD-TYPE" 
                   TCGA-BR-8291                    TCGA-BR-8295 
"AMP PEAK  2(1Q21.3) WILD-TYPE" "AMP PEAK  2(1Q21.3) WILD-TYPE" 
                   TCGA-BR-8296                    TCGA-BR-8297 
"AMP PEAK  2(1Q21.3) WILD-TYPE" "AMP PEAK  2(1Q21.3) WILD-TYPE" 
                   TCGA-CD-5798                    TCGA-CD-5799 
"AMP PEAK  2(1Q21.3) WILD-TYPE" "AMP PEAK  2(1Q21.3) WILD-TYPE" 
                   TCGA-CD-5800                    TCGA-CD-5801 
  "AMP PEAK  2(1Q21.3) MUTATED" "AMP PEAK  2(1Q21.3) WILD-TYPE" 
                   TCGA-CD-5802                    TCGA-CD-5803 
"AMP PEAK  2(1Q21.3) WILD-TYPE" "AMP PEAK  2(1Q21.3) WILD-TYPE" 
                   TCGA-CG-4300                    TCGA-CG-4301 
"AMP PEAK  2(1Q21.3) WILD-TYPE" "AMP PEAK  2(1Q21.3) WILD-TYPE" 
                   TCGA-CG-4304                    TCGA-CG-4305 
"AMP PEAK  2(1Q21.3) WILD-TYPE" "AMP PEAK  2(1Q21.3) WILD-TYPE" 
                   TCGA-CG-4306                    TCGA-CG-4436 
"AMP PEAK  2(1Q21.3) WILD-TYPE"   "AMP PEAK  2(1Q21.3) MUTATED" 
                   TCGA-CG-4437                    TCGA-CG-4438 
"AMP PEAK  2(1Q21.3) WILD-TYPE"   "AMP PEAK  2(1Q21.3) MUTATED" 
                   TCGA-CG-4440                    TCGA-CG-4441 
"AMP PEAK  2(1Q21.3) WILD-TYPE" "AMP PEAK  2(1Q21.3) WILD-TYPE" 
                   TCGA-CG-4443                    TCGA-CG-4444 
"AMP PEAK  2(1Q21.3) WILD-TYPE"   "AMP PEAK  2(1Q21.3) MUTATED" 
                   TCGA-CG-4449                    TCGA-CG-4455 
"AMP PEAK  2(1Q21.3) WILD-TYPE" "AMP PEAK  2(1Q21.3) WILD-TYPE" 
                   TCGA-CG-4460                    TCGA-CG-4462 
  "AMP PEAK  2(1Q21.3) MUTATED" "AMP PEAK  2(1Q21.3) WILD-TYPE" 
                   TCGA-CG-4465                    TCGA-CG-4466 
"AMP PEAK  2(1Q21.3) WILD-TYPE"   "AMP PEAK  2(1Q21.3) MUTATED" 
                   TCGA-CG-4469                    TCGA-CG-4472 
  "AMP PEAK  2(1Q21.3) MUTATED"   "AMP PEAK  2(1Q21.3) MUTATED" 
                   TCGA-CG-4474                    TCGA-CG-4477 
"AMP PEAK  2(1Q21.3) WILD-TYPE" "AMP PEAK  2(1Q21.3) WILD-TYPE" 
                   TCGA-CG-5716                    TCGA-CG-5717 
"AMP PEAK  2(1Q21.3) WILD-TYPE" "AMP PEAK  2(1Q21.3) WILD-TYPE" 
                   TCGA-CG-5718                    TCGA-CG-5719 
  "AMP PEAK  2(1Q21.3) MUTATED" "AMP PEAK  2(1Q21.3) WILD-TYPE" 
                   TCGA-CG-5720                    TCGA-CG-5721 
"AMP PEAK  2(1Q21.3) WILD-TYPE" "AMP PEAK  2(1Q21.3) WILD-TYPE" 
                   TCGA-CG-5722                    TCGA-CG-5723 
"AMP PEAK  2(1Q21.3) WILD-TYPE" "AMP PEAK  2(1Q21.3) WILD-TYPE" 
                   TCGA-CG-5724                    TCGA-CG-5725 
  "AMP PEAK  2(1Q21.3) MUTATED" "AMP PEAK  2(1Q21.3) WILD-TYPE" 
                   TCGA-CG-5726                    TCGA-CG-5727 
"AMP PEAK  2(1Q21.3) WILD-TYPE" "AMP PEAK  2(1Q21.3) WILD-TYPE" 
                   TCGA-CG-5728                    TCGA-CG-5730 
"AMP PEAK  2(1Q21.3) WILD-TYPE"   "AMP PEAK  2(1Q21.3) MUTATED" 
                   TCGA-CG-5732                    TCGA-CG-5733 
"AMP PEAK  2(1Q21.3) WILD-TYPE" "AMP PEAK  2(1Q21.3) WILD-TYPE" 
                   TCGA-CG-5734                    TCGA-D7-5577 
"AMP PEAK  2(1Q21.3) WILD-TYPE" "AMP PEAK  2(1Q21.3) WILD-TYPE" 
                   TCGA-D7-5578                    TCGA-D7-5579 
"AMP PEAK  2(1Q21.3) WILD-TYPE"   "AMP PEAK  2(1Q21.3) MUTATED" 
                   TCGA-D7-6518                    TCGA-D7-6519 
"AMP PEAK  2(1Q21.3) WILD-TYPE"   "AMP PEAK  2(1Q21.3) MUTATED" 
                   TCGA-D7-6520                    TCGA-D7-6521 
"AMP PEAK  2(1Q21.3) WILD-TYPE"   "AMP PEAK  2(1Q21.3) MUTATED" 
                   TCGA-D7-6522                    TCGA-D7-6524 
"AMP PEAK  2(1Q21.3) WILD-TYPE" "AMP PEAK  2(1Q21.3) WILD-TYPE" 
                   TCGA-D7-6525                    TCGA-D7-6526 
"AMP PEAK  2(1Q21.3) WILD-TYPE"   "AMP PEAK  2(1Q21.3) MUTATED" 
                   TCGA-D7-6527                    TCGA-D7-6528 
  "AMP PEAK  2(1Q21.3) MUTATED"   "AMP PEAK  2(1Q21.3) MUTATED" 
                   TCGA-D7-6815                    TCGA-D7-6817 
"AMP PEAK  2(1Q21.3) WILD-TYPE"   "AMP PEAK  2(1Q21.3) MUTATED" 
                   TCGA-D7-6818                    TCGA-D7-6820 
  "AMP PEAK  2(1Q21.3) MUTATED"   "AMP PEAK  2(1Q21.3) MUTATED" 
                   TCGA-D7-6822                    TCGA-EQ-5647 
  "AMP PEAK  2(1Q21.3) MUTATED"   "AMP PEAK  2(1Q21.3) MUTATED" 
                   TCGA-EQ-8122                    TCGA-F1-6177 
"AMP PEAK  2(1Q21.3) WILD-TYPE" "AMP PEAK  2(1Q21.3) WILD-TYPE" 
                   TCGA-F1-6874                    TCGA-F1-6875 
"AMP PEAK  2(1Q21.3) WILD-TYPE"   "AMP PEAK  2(1Q21.3) MUTATED" 
                   TCGA-FP-7735                    TCGA-FP-7829 
  "AMP PEAK  2(1Q21.3) MUTATED" "AMP PEAK  2(1Q21.3) WILD-TYPE" 
                   TCGA-FP-7916                    TCGA-FP-7998 
  "AMP PEAK  2(1Q21.3) MUTATED" "AMP PEAK  2(1Q21.3) WILD-TYPE" 
                   TCGA-HJ-7597                    TCGA-IN-7806 
  "AMP PEAK  2(1Q21.3) MUTATED" "AMP PEAK  2(1Q21.3) WILD-TYPE" 
                   TCGA-IN-7808                    TCGA-IP-7968 
  "AMP PEAK  2(1Q21.3) MUTATED" "AMP PEAK  2(1Q21.3) WILD-TYPE" 
                   TCGA-B7-5816                    TCGA-B7-5818 
"AMP PEAK  2(1Q21.3) WILD-TYPE" "AMP PEAK  2(1Q21.3) WILD-TYPE" 
                   TCGA-BR-6452                    TCGA-BR-6455 
"AMP PEAK  2(1Q21.3) WILD-TYPE" "AMP PEAK  2(1Q21.3) WILD-TYPE" 
                   TCGA-BR-6457                    TCGA-BR-6458 
"AMP PEAK  2(1Q21.3) WILD-TYPE"   "AMP PEAK  2(1Q21.3) MUTATED" 
                   TCGA-BR-6563                    TCGA-BR-6564 
"AMP PEAK  2(1Q21.3) WILD-TYPE" "AMP PEAK  2(1Q21.3) WILD-TYPE" 
                   TCGA-BR-6565                    TCGA-BR-6566 
"AMP PEAK  2(1Q21.3) WILD-TYPE" "AMP PEAK  2(1Q21.3) WILD-TYPE" 
                   TCGA-BR-6705                    TCGA-BR-6706 
  "AMP PEAK  2(1Q21.3) MUTATED" "AMP PEAK  2(1Q21.3) WILD-TYPE" 
                   TCGA-BR-6707                    TCGA-BR-6709 
"AMP PEAK  2(1Q21.3) WILD-TYPE" "AMP PEAK  2(1Q21.3) WILD-TYPE" 
                   TCGA-BR-6710                    TCGA-BR-6801 
"AMP PEAK  2(1Q21.3) WILD-TYPE" "AMP PEAK  2(1Q21.3) WILD-TYPE" 
                   TCGA-BR-6802                    TCGA-BR-6803 
"AMP PEAK  2(1Q21.3) WILD-TYPE" "AMP PEAK  2(1Q21.3) WILD-TYPE" 
                   TCGA-BR-6852                    TCGA-BR-7196 
"AMP PEAK  2(1Q21.3) WILD-TYPE" "AMP PEAK  2(1Q21.3) WILD-TYPE" 
                   TCGA-BR-7197                    TCGA-BR-7703 
  "AMP PEAK  2(1Q21.3) MUTATED" "AMP PEAK  2(1Q21.3) WILD-TYPE" 
                   TCGA-BR-7704                    TCGA-BR-7707 
"AMP PEAK  2(1Q21.3) WILD-TYPE" "AMP PEAK  2(1Q21.3) WILD-TYPE" 
                   TCGA-BR-7715                    TCGA-BR-7716 
"AMP PEAK  2(1Q21.3) WILD-TYPE" "AMP PEAK  2(1Q21.3) WILD-TYPE" 
                   TCGA-BR-7717                    TCGA-BR-7722 
  "AMP PEAK  2(1Q21.3) MUTATED" "AMP PEAK  2(1Q21.3) WILD-TYPE" 
                   TCGA-BR-7723                    TCGA-BR-7851 
  "AMP PEAK  2(1Q21.3) MUTATED" "AMP PEAK  2(1Q21.3) WILD-TYPE" 
                   TCGA-BR-7901                    TCGA-BR-7957 
  "AMP PEAK  2(1Q21.3) MUTATED" "AMP PEAK  2(1Q21.3) WILD-TYPE" 
                   TCGA-BR-7958                    TCGA-BR-7959 
"AMP PEAK  2(1Q21.3) WILD-TYPE" "AMP PEAK  2(1Q21.3) WILD-TYPE" 
                   TCGA-BR-8059                    TCGA-BR-8060 
"AMP PEAK  2(1Q21.3) WILD-TYPE" "AMP PEAK  2(1Q21.3) WILD-TYPE" 
                   TCGA-BR-8077                    TCGA-BR-8078 
"AMP PEAK  2(1Q21.3) WILD-TYPE" "AMP PEAK  2(1Q21.3) WILD-TYPE" 
                   TCGA-BR-8080                    TCGA-BR-8081 
"AMP PEAK  2(1Q21.3) WILD-TYPE" "AMP PEAK  2(1Q21.3) WILD-TYPE" 
                   TCGA-BR-8284                    TCGA-BR-8285 
"AMP PEAK  2(1Q21.3) WILD-TYPE" "AMP PEAK  2(1Q21.3) WILD-TYPE" 
                   TCGA-BR-8286                    TCGA-BR-8289 
"AMP PEAK  2(1Q21.3) WILD-TYPE" "AMP PEAK  2(1Q21.3) WILD-TYPE" 
                   TCGA-BR-8291                    TCGA-BR-8295 
"AMP PEAK  2(1Q21.3) WILD-TYPE" "AMP PEAK  2(1Q21.3) WILD-TYPE" 
                   TCGA-BR-8296                    TCGA-BR-8297 
"AMP PEAK  2(1Q21.3) WILD-TYPE" "AMP PEAK  2(1Q21.3) WILD-TYPE" 
                   TCGA-CD-5798                    TCGA-CD-5799 
"AMP PEAK  2(1Q21.3) WILD-TYPE" "AMP PEAK  2(1Q21.3) WILD-TYPE" 
                   TCGA-CD-5800                    TCGA-CD-5801 
  "AMP PEAK  2(1Q21.3) MUTATED" "AMP PEAK  2(1Q21.3) WILD-TYPE" 
                   TCGA-CD-5802                    TCGA-CD-5803 
"AMP PEAK  2(1Q21.3) WILD-TYPE" "AMP PEAK  2(1Q21.3) WILD-TYPE" 
                   TCGA-CG-4300                    TCGA-CG-4301 
"AMP PEAK  2(1Q21.3) WILD-TYPE" "AMP PEAK  2(1Q21.3) WILD-TYPE" 
                   TCGA-CG-4304                    TCGA-CG-4305 
"AMP PEAK  2(1Q21.3) WILD-TYPE" "AMP PEAK  2(1Q21.3) WILD-TYPE" 
                   TCGA-CG-4306                    TCGA-CG-4436 
"AMP PEAK  2(1Q21.3) WILD-TYPE"   "AMP PEAK  2(1Q21.3) MUTATED" 
                   TCGA-CG-4437                    TCGA-CG-4438 
"AMP PEAK  2(1Q21.3) WILD-TYPE"   "AMP PEAK  2(1Q21.3) MUTATED" 
                   TCGA-CG-4440                    TCGA-CG-4441 
"AMP PEAK  2(1Q21.3) WILD-TYPE" "AMP PEAK  2(1Q21.3) WILD-TYPE" 
                   TCGA-CG-4443                    TCGA-CG-4444 
"AMP PEAK  2(1Q21.3) WILD-TYPE"   "AMP PEAK  2(1Q21.3) MUTATED" 
                   TCGA-CG-4449                    TCGA-CG-4455 
"AMP PEAK  2(1Q21.3) WILD-TYPE" "AMP PEAK  2(1Q21.3) WILD-TYPE" 
                   TCGA-CG-4460                    TCGA-CG-4462 
  "AMP PEAK  2(1Q21.3) MUTATED" "AMP PEAK  2(1Q21.3) WILD-TYPE" 
                   TCGA-CG-4465                    TCGA-CG-4466 
"AMP PEAK  2(1Q21.3) WILD-TYPE"   "AMP PEAK  2(1Q21.3) MUTATED" 
                   TCGA-CG-4469                    TCGA-CG-4472 
  "AMP PEAK  2(1Q21.3) MUTATED"   "AMP PEAK  2(1Q21.3) MUTATED" 
                   TCGA-CG-4474                    TCGA-CG-4477 
"AMP PEAK  2(1Q21.3) WILD-TYPE" "AMP PEAK  2(1Q21.3) WILD-TYPE" 
                   TCGA-CG-5716                    TCGA-CG-5717 
"AMP PEAK  2(1Q21.3) WILD-TYPE" "AMP PEAK  2(1Q21.3) WILD-TYPE" 
                   TCGA-CG-5718                    TCGA-CG-5719 
  "AMP PEAK  2(1Q21.3) MUTATED" "AMP PEAK  2(1Q21.3) WILD-TYPE" 
                   TCGA-CG-5720                    TCGA-CG-5721 
"AMP PEAK  2(1Q21.3) WILD-TYPE" "AMP PEAK  2(1Q21.3) WILD-TYPE" 
                   TCGA-CG-5722                    TCGA-CG-5723 
"AMP PEAK  2(1Q21.3) WILD-TYPE" "AMP PEAK  2(1Q21.3) WILD-TYPE" 
                   TCGA-CG-5724                    TCGA-CG-5725 
  "AMP PEAK  2(1Q21.3) MUTATED" "AMP PEAK  2(1Q21.3) WILD-TYPE" 
                   TCGA-CG-5726                    TCGA-CG-5727 
"AMP PEAK  2(1Q21.3) WILD-TYPE" "AMP PEAK  2(1Q21.3) WILD-TYPE" 
                   TCGA-CG-5728                    TCGA-CG-5730 
"AMP PEAK  2(1Q21.3) WILD-TYPE"   "AMP PEAK  2(1Q21.3) MUTATED" 
                   TCGA-CG-5732                    TCGA-CG-5733 
"AMP PEAK  2(1Q21.3) WILD-TYPE" "AMP PEAK  2(1Q21.3) WILD-TYPE" 
                   TCGA-CG-5734                    TCGA-D7-5577 
"AMP PEAK  2(1Q21.3) WILD-TYPE" "AMP PEAK  2(1Q21.3) WILD-TYPE" 
                   TCGA-D7-5578                    TCGA-D7-5579 
"AMP PEAK  2(1Q21.3) WILD-TYPE"   "AMP PEAK  2(1Q21.3) MUTATED" 
                   TCGA-D7-6518                    TCGA-D7-6519 
"AMP PEAK  2(1Q21.3) WILD-TYPE"   "AMP PEAK  2(1Q21.3) MUTATED" 
                   TCGA-D7-6520                    TCGA-D7-6521 
"AMP PEAK  2(1Q21.3) WILD-TYPE"   "AMP PEAK  2(1Q21.3) MUTATED" 
                   TCGA-D7-6522                    TCGA-D7-6524 
"AMP PEAK  2(1Q21.3) WILD-TYPE" "AMP PEAK  2(1Q21.3) WILD-TYPE" 
                   TCGA-D7-6525                    TCGA-D7-6526 
"AMP PEAK  2(1Q21.3) WILD-TYPE"   "AMP PEAK  2(1Q21.3) MUTATED" 
                   TCGA-D7-6527                    TCGA-D7-6528 
  "AMP PEAK  2(1Q21.3) MUTATED"   "AMP PEAK  2(1Q21.3) MUTATED" 
                   TCGA-D7-6815                    TCGA-D7-6817 
"AMP PEAK  2(1Q21.3) WILD-TYPE"   "AMP PEAK  2(1Q21.3) MUTATED" 
                   TCGA-D7-6818                    TCGA-D7-6820 
  "AMP PEAK  2(1Q21.3) MUTATED"   "AMP PEAK  2(1Q21.3) MUTATED" 
                   TCGA-D7-6822                    TCGA-EQ-5647 
  "AMP PEAK  2(1Q21.3) MUTATED"   "AMP PEAK  2(1Q21.3) MUTATED" 
                   TCGA-EQ-8122                    TCGA-F1-6177 
"AMP PEAK  2(1Q21.3) WILD-TYPE" "AMP PEAK  2(1Q21.3) WILD-TYPE" 
                   TCGA-F1-6874                    TCGA-F1-6875 
"AMP PEAK  2(1Q21.3) WILD-TYPE"   "AMP PEAK  2(1Q21.3) MUTATED" 
                   TCGA-FP-7735                    TCGA-FP-7829 
  "AMP PEAK  2(1Q21.3) MUTATED" "AMP PEAK  2(1Q21.3) WILD-TYPE" 
                   TCGA-FP-7916                    TCGA-FP-7998 
  "AMP PEAK  2(1Q21.3) MUTATED" "AMP PEAK  2(1Q21.3) WILD-TYPE" 
                   TCGA-HJ-7597                    TCGA-IN-7806 
  "AMP PEAK  2(1Q21.3) MUTATED" "AMP PEAK  2(1Q21.3) WILD-TYPE" 
                   TCGA-IN-7808                    TCGA-IP-7968 
  "AMP PEAK  2(1Q21.3) MUTATED" "AMP PEAK  2(1Q21.3) WILD-TYPE" 
                   TCGA-B7-5816                    TCGA-B7-5818 
"AMP PEAK  2(1Q21.3) WILD-TYPE" "AMP PEAK  2(1Q21.3) WILD-TYPE" 
                   TCGA-BR-6452                    TCGA-BR-6455 
"AMP PEAK  2(1Q21.3) WILD-TYPE" "AMP PEAK  2(1Q21.3) WILD-TYPE" 
                   TCGA-BR-6457                    TCGA-BR-6458 
"AMP PEAK  2(1Q21.3) WILD-TYPE"   "AMP PEAK  2(1Q21.3) MUTATED" 
                   TCGA-BR-6563                    TCGA-BR-6564 
"AMP PEAK  2(1Q21.3) WILD-TYPE" "AMP PEAK  2(1Q21.3) WILD-TYPE" 
                   TCGA-BR-6565                    TCGA-BR-6566 
"AMP PEAK  2(1Q21.3) WILD-TYPE" "AMP PEAK  2(1Q21.3) WILD-TYPE" 
                   TCGA-BR-6705                    TCGA-BR-6706 
  "AMP PEAK  2(1Q21.3) MUTATED" "AMP PEAK  2(1Q21.3) WILD-TYPE" 
                   TCGA-BR-6707                    TCGA-BR-6709 
"AMP PEAK  2(1Q21.3) WILD-TYPE" "AMP PEAK  2(1Q21.3) WILD-TYPE" 
                   TCGA-BR-6710                    TCGA-BR-6801 
"AMP PEAK  2(1Q21.3) WILD-TYPE" "AMP PEAK  2(1Q21.3) WILD-TYPE" 
                   TCGA-BR-6802                    TCGA-BR-6803 
"AMP PEAK  2(1Q21.3) WILD-TYPE" "AMP PEAK  2(1Q21.3) WILD-TYPE" 
                   TCGA-BR-6852                    TCGA-BR-7196 
"AMP PEAK  2(1Q21.3) WILD-TYPE" "AMP PEAK  2(1Q21.3) WILD-TYPE" 
                   TCGA-BR-7197                    TCGA-BR-7703 
  "AMP PEAK  2(1Q21.3) MUTATED" "AMP PEAK  2(1Q21.3) WILD-TYPE" 
                   TCGA-BR-7704                    TCGA-BR-7707 
"AMP PEAK  2(1Q21.3) WILD-TYPE" "AMP PEAK  2(1Q21.3) WILD-TYPE" 
                   TCGA-BR-7715                    TCGA-BR-7716 
"AMP PEAK  2(1Q21.3) WILD-TYPE" "AMP PEAK  2(1Q21.3) WILD-TYPE" 
                   TCGA-BR-7717                    TCGA-BR-7722 
  "AMP PEAK  2(1Q21.3) MUTATED" "AMP PEAK  2(1Q21.3) WILD-TYPE" 
                   TCGA-BR-7723                    TCGA-BR-7851 
  "AMP PEAK  2(1Q21.3) MUTATED" "AMP PEAK  2(1Q21.3) WILD-TYPE" 
                   TCGA-BR-7901                    TCGA-BR-7957 
  "AMP PEAK  2(1Q21.3) MUTATED" "AMP PEAK  2(1Q21.3) WILD-TYPE" 
                   TCGA-BR-7958                    TCGA-BR-7959 
"AMP PEAK  2(1Q21.3) WILD-TYPE" "AMP PEAK  2(1Q21.3) WILD-TYPE" 
                   TCGA-BR-8059                    TCGA-BR-8060 
"AMP PEAK  2(1Q21.3) WILD-TYPE" "AMP PEAK  2(1Q21.3) WILD-TYPE" 
                   TCGA-BR-8077                    TCGA-BR-8078 
"AMP PEAK  2(1Q21.3) WILD-TYPE" "AMP PEAK  2(1Q21.3) WILD-TYPE" 
                   TCGA-BR-8080                    TCGA-BR-8081 
"AMP PEAK  2(1Q21.3) WILD-TYPE" "AMP PEAK  2(1Q21.3) WILD-TYPE" 
                   TCGA-BR-8284                    TCGA-BR-8285 
"AMP PEAK  2(1Q21.3) WILD-TYPE" "AMP PEAK  2(1Q21.3) WILD-TYPE" 
                   TCGA-BR-8286                    TCGA-BR-8289 
"AMP PEAK  2(1Q21.3) WILD-TYPE" "AMP PEAK  2(1Q21.3) WILD-TYPE" 
                   TCGA-BR-8291                    TCGA-BR-8295 
"AMP PEAK  2(1Q21.3) WILD-TYPE" "AMP PEAK  2(1Q21.3) WILD-TYPE" 
                   TCGA-BR-8296                    TCGA-BR-8297 
"AMP PEAK  2(1Q21.3) WILD-TYPE" "AMP PEAK  2(1Q21.3) WILD-TYPE" 
                   TCGA-CD-5798                    TCGA-CD-5799 
"AMP PEAK  2(1Q21.3) WILD-TYPE" "AMP PEAK  2(1Q21.3) WILD-TYPE" 
                   TCGA-CD-5800                    TCGA-CD-5801 
  "AMP PEAK  2(1Q21.3) MUTATED" "AMP PEAK  2(1Q21.3) WILD-TYPE" 
                   TCGA-CD-5802                    TCGA-CD-5803 
"AMP PEAK  2(1Q21.3) WILD-TYPE" "AMP PEAK  2(1Q21.3) WILD-TYPE" 
                   TCGA-CG-4300                    TCGA-CG-4301 
"AMP PEAK  2(1Q21.3) WILD-TYPE" "AMP PEAK  2(1Q21.3) WILD-TYPE" 
                   TCGA-CG-4304                    TCGA-CG-4305 
"AMP PEAK  2(1Q21.3) WILD-TYPE" "AMP PEAK  2(1Q21.3) WILD-TYPE" 
                   TCGA-CG-4306                    TCGA-CG-4436 
"AMP PEAK  2(1Q21.3) WILD-TYPE"   "AMP PEAK  2(1Q21.3) MUTATED" 
                   TCGA-CG-4437                    TCGA-CG-4438 
"AMP PEAK  2(1Q21.3) WILD-TYPE"   "AMP PEAK  2(1Q21.3) MUTATED" 
                   TCGA-CG-4440                    TCGA-CG-4441 
"AMP PEAK  2(1Q21.3) WILD-TYPE" "AMP PEAK  2(1Q21.3) WILD-TYPE" 
                   TCGA-CG-4443                    TCGA-CG-4444 
"AMP PEAK  2(1Q21.3) WILD-TYPE"   "AMP PEAK  2(1Q21.3) MUTATED" 
                   TCGA-CG-4449                    TCGA-CG-4455 
"AMP PEAK  2(1Q21.3) WILD-TYPE" "AMP PEAK  2(1Q21.3) WILD-TYPE" 
                   TCGA-CG-4460                    TCGA-CG-4462 
  "AMP PEAK  2(1Q21.3) MUTATED" "AMP PEAK  2(1Q21.3) WILD-TYPE" 
                   TCGA-CG-4465                    TCGA-CG-4466 
"AMP PEAK  2(1Q21.3) WILD-TYPE"   "AMP PEAK  2(1Q21.3) MUTATED" 
                   TCGA-CG-4469                    TCGA-CG-4472 
  "AMP PEAK  2(1Q21.3) MUTATED"   "AMP PEAK  2(1Q21.3) MUTATED" 
                   TCGA-CG-4474                    TCGA-CG-4477 
"AMP PEAK  2(1Q21.3) WILD-TYPE" "AMP PEAK  2(1Q21.3) WILD-TYPE" 
                   TCGA-CG-5716                    TCGA-CG-5717 
"AMP PEAK  2(1Q21.3) WILD-TYPE" "AMP PEAK  2(1Q21.3) WILD-TYPE" 
                   TCGA-CG-5718                    TCGA-CG-5719 
  "AMP PEAK  2(1Q21.3) MUTATED" "AMP PEAK  2(1Q21.3) WILD-TYPE" 
                   TCGA-CG-5720                    TCGA-CG-5721 
"AMP PEAK  2(1Q21.3) WILD-TYPE" "AMP PEAK  2(1Q21.3) WILD-TYPE" 
                   TCGA-CG-5722                    TCGA-CG-5723 
"AMP PEAK  2(1Q21.3) WILD-TYPE" "AMP PEAK  2(1Q21.3) WILD-TYPE" 
                   TCGA-CG-5724                    TCGA-CG-5725 
  "AMP PEAK  2(1Q21.3) MUTATED" "AMP PEAK  2(1Q21.3) WILD-TYPE" 
                   TCGA-CG-5726                    TCGA-CG-5727 
"AMP PEAK  2(1Q21.3) WILD-TYPE" "AMP PEAK  2(1Q21.3) WILD-TYPE" 
                   TCGA-CG-5728                    TCGA-CG-5730 
"AMP PEAK  2(1Q21.3) WILD-TYPE"   "AMP PEAK  2(1Q21.3) MUTATED" 
                   TCGA-CG-5732                    TCGA-CG-5733 
"AMP PEAK  2(1Q21.3) WILD-TYPE" "AMP PEAK  2(1Q21.3) WILD-TYPE" 
                   TCGA-CG-5734                    TCGA-D7-5577 
"AMP PEAK  2(1Q21.3) WILD-TYPE" "AMP PEAK  2(1Q21.3) WILD-TYPE" 
                   TCGA-D7-5578                    TCGA-D7-5579 
"AMP PEAK  2(1Q21.3) WILD-TYPE"   "AMP PEAK  2(1Q21.3) MUTATED" 
                   TCGA-D7-6518                    TCGA-D7-6519 
"AMP PEAK  2(1Q21.3) WILD-TYPE"   "AMP PEAK  2(1Q21.3) MUTATED" 
                   TCGA-D7-6520                    TCGA-D7-6521 
"AMP PEAK  2(1Q21.3) WILD-TYPE"   "AMP PEAK  2(1Q21.3) MUTATED" 
                   TCGA-D7-6522                    TCGA-D7-6524 
"AMP PEAK  2(1Q21.3) WILD-TYPE" "AMP PEAK  2(1Q21.3) WILD-TYPE" 
                   TCGA-D7-6525                    TCGA-D7-6526 
"AMP PEAK  2(1Q21.3) WILD-TYPE"   "AMP PEAK  2(1Q21.3) MUTATED" 
                   TCGA-D7-6527                    TCGA-D7-6528 
  "AMP PEAK  2(1Q21.3) MUTATED"   "AMP PEAK  2(1Q21.3) MUTATED" 
                   TCGA-D7-6815                    TCGA-D7-6817 
"AMP PEAK  2(1Q21.3) WILD-TYPE"   "AMP PEAK  2(1Q21.3) MUTATED" 
                   TCGA-D7-6818                    TCGA-D7-6820 
  "AMP PEAK  2(1Q21.3) MUTATED"   "AMP PEAK  2(1Q21.3) MUTATED" 
                   TCGA-D7-6822                    TCGA-EQ-5647 
  "AMP PEAK  2(1Q21.3) MUTATED"   "AMP PEAK  2(1Q21.3) MUTATED" 
                   TCGA-EQ-8122                    TCGA-F1-6177 
"AMP PEAK  2(1Q21.3) WILD-TYPE" "AMP PEAK  2(1Q21.3) WILD-TYPE" 
                   TCGA-F1-6874                    TCGA-F1-6875 
"AMP PEAK  2(1Q21.3) WILD-TYPE"   "AMP PEAK  2(1Q21.3) MUTATED" 
                   TCGA-FP-7735                    TCGA-FP-7829 
  "AMP PEAK  2(1Q21.3) MUTATED" "AMP PEAK  2(1Q21.3) WILD-TYPE" 
                   TCGA-FP-7916                    TCGA-FP-7998 
  "AMP PEAK  2(1Q21.3) MUTATED" "AMP PEAK  2(1Q21.3) WILD-TYPE" 
                   TCGA-HJ-7597                    TCGA-IN-7806 
  "AMP PEAK  2(1Q21.3) MUTATED" "AMP PEAK  2(1Q21.3) WILD-TYPE" 
                   TCGA-IN-7808                    TCGA-IP-7968 
  "AMP PEAK  2(1Q21.3) MUTATED" "AMP PEAK  2(1Q21.3) WILD-TYPE" 
[1] "hr=" "1.2"
D2V2, continuous
D2V3, binary
[1] "tbl2"
                               cls
clus                            [,1] [,2]
  AMP PEAK  2(1Q21.3) MUTATED     20   30
  AMP PEAK  2(1Q21.3) WILD-TYPE   45   66
        clus
vv       AMP PEAK  2(1Q21.3) MUTATED AMP PEAK  2(1Q21.3) WILD-TYPE
  FEMALE                          20                            45
  MALE                            30                            66
D2V4, multiclass
D2V5, multiclass
    clus
vv   AMP PEAK  2(1Q21.3) MUTATED AMP PEAK  2(1Q21.3) WILD-TYPE
  T1                           2                             4
  T2                          20                            33
  T3                          19                            40
  T4                           6                            27
D2V6, multiclass
    clus
vv   AMP PEAK  2(1Q21.3) MUTATED AMP PEAK  2(1Q21.3) WILD-TYPE
  N0                          12                            38
  N1                          16                            41
  N2                           7                            17
  N3                           8                            11
D2V7, multiclass
    clus
vv   AMP PEAK  2(1Q21.3) MUTATED AMP PEAK  2(1Q21.3) WILD-TYPE
  M0                          40                            92
  M1                           5                            13
  MX                           5                             6
D2V8, multiclass
     clus
vv    AMP PEAK  2(1Q21.3) MUTATED AMP PEAK  2(1Q21.3) WILD-TYPE
  I                             9                            16
  II                           11                            32
  III                          13                            35
  IV                           10                            19
D2V9, binary
[1] "tbl2"
                               cls
clus                            [,1] [,2]
  AMP PEAK  2(1Q21.3) MUTATED     46    4
  AMP PEAK  2(1Q21.3) WILD-TYPE  110    1
     clus
vv    AMP PEAK  2(1Q21.3) MUTATED AMP PEAK  2(1Q21.3) WILD-TYPE
  NO                            4                             1
  YES                          46                           110

Clustering(3) Variable = Amp Peak  3(1q42.3) mutation analysis
D3V1, survival
                   TCGA-B7-5816                    TCGA-B7-5818 
"AMP PEAK  3(1Q42.3) WILD-TYPE" "AMP PEAK  3(1Q42.3) WILD-TYPE" 
                   TCGA-BR-6452                    TCGA-BR-6455 
"AMP PEAK  3(1Q42.3) WILD-TYPE" "AMP PEAK  3(1Q42.3) WILD-TYPE" 
                   TCGA-BR-6457                    TCGA-BR-6458 
"AMP PEAK  3(1Q42.3) WILD-TYPE"   "AMP PEAK  3(1Q42.3) MUTATED" 
                   TCGA-BR-6563                    TCGA-BR-6564 
"AMP PEAK  3(1Q42.3) WILD-TYPE" "AMP PEAK  3(1Q42.3) WILD-TYPE" 
                   TCGA-BR-6565                    TCGA-BR-6566 
  "AMP PEAK  3(1Q42.3) MUTATED" "AMP PEAK  3(1Q42.3) WILD-TYPE" 
                   TCGA-BR-6705                    TCGA-BR-6706 
  "AMP PEAK  3(1Q42.3) MUTATED" "AMP PEAK  3(1Q42.3) WILD-TYPE" 
                   TCGA-BR-6707                    TCGA-BR-6709 
"AMP PEAK  3(1Q42.3) WILD-TYPE" "AMP PEAK  3(1Q42.3) WILD-TYPE" 
                   TCGA-BR-6710                    TCGA-BR-6801 
"AMP PEAK  3(1Q42.3) WILD-TYPE" "AMP PEAK  3(1Q42.3) WILD-TYPE" 
                   TCGA-BR-6802                    TCGA-BR-6803 
"AMP PEAK  3(1Q42.3) WILD-TYPE" "AMP PEAK  3(1Q42.3) WILD-TYPE" 
                   TCGA-BR-6852                    TCGA-BR-7196 
"AMP PEAK  3(1Q42.3) WILD-TYPE" "AMP PEAK  3(1Q42.3) WILD-TYPE" 
                   TCGA-BR-7197                    TCGA-BR-7703 
  "AMP PEAK  3(1Q42.3) MUTATED" "AMP PEAK  3(1Q42.3) WILD-TYPE" 
                   TCGA-BR-7704                    TCGA-BR-7707 
"AMP PEAK  3(1Q42.3) WILD-TYPE" "AMP PEAK  3(1Q42.3) WILD-TYPE" 
                   TCGA-BR-7715                    TCGA-BR-7716 
  "AMP PEAK  3(1Q42.3) MUTATED"   "AMP PEAK  3(1Q42.3) MUTATED" 
                   TCGA-BR-7717                    TCGA-BR-7722 
  "AMP PEAK  3(1Q42.3) MUTATED" "AMP PEAK  3(1Q42.3) WILD-TYPE" 
                   TCGA-BR-7723                    TCGA-BR-7851 
  "AMP PEAK  3(1Q42.3) MUTATED" "AMP PEAK  3(1Q42.3) WILD-TYPE" 
                   TCGA-BR-7901                    TCGA-BR-7957 
"AMP PEAK  3(1Q42.3) WILD-TYPE" "AMP PEAK  3(1Q42.3) WILD-TYPE" 
                   TCGA-BR-7958                    TCGA-BR-7959 
"AMP PEAK  3(1Q42.3) WILD-TYPE" "AMP PEAK  3(1Q42.3) WILD-TYPE" 
                   TCGA-BR-8059                    TCGA-BR-8060 
"AMP PEAK  3(1Q42.3) WILD-TYPE" "AMP PEAK  3(1Q42.3) WILD-TYPE" 
                   TCGA-BR-8077                    TCGA-BR-8078 
"AMP PEAK  3(1Q42.3) WILD-TYPE" "AMP PEAK  3(1Q42.3) WILD-TYPE" 
                   TCGA-BR-8080                    TCGA-BR-8081 
"AMP PEAK  3(1Q42.3) WILD-TYPE" "AMP PEAK  3(1Q42.3) WILD-TYPE" 
                   TCGA-BR-8284                    TCGA-BR-8285 
"AMP PEAK  3(1Q42.3) WILD-TYPE" "AMP PEAK  3(1Q42.3) WILD-TYPE" 
                   TCGA-BR-8286                    TCGA-BR-8289 
"AMP PEAK  3(1Q42.3) WILD-TYPE" "AMP PEAK  3(1Q42.3) WILD-TYPE" 
                   TCGA-BR-8291                    TCGA-BR-8295 
"AMP PEAK  3(1Q42.3) WILD-TYPE" "AMP PEAK  3(1Q42.3) WILD-TYPE" 
                   TCGA-BR-8296                    TCGA-BR-8297 
"AMP PEAK  3(1Q42.3) WILD-TYPE" "AMP PEAK  3(1Q42.3) WILD-TYPE" 
                   TCGA-CD-5798                    TCGA-CD-5799 
"AMP PEAK  3(1Q42.3) WILD-TYPE" "AMP PEAK  3(1Q42.3) WILD-TYPE" 
                   TCGA-CD-5800                    TCGA-CD-5801 
  "AMP PEAK  3(1Q42.3) MUTATED" "AMP PEAK  3(1Q42.3) WILD-TYPE" 
                   TCGA-CD-5802                    TCGA-CD-5803 
"AMP PEAK  3(1Q42.3) WILD-TYPE" "AMP PEAK  3(1Q42.3) WILD-TYPE" 
                   TCGA-CG-4300                    TCGA-CG-4301 
"AMP PEAK  3(1Q42.3) WILD-TYPE" "AMP PEAK  3(1Q42.3) WILD-TYPE" 
                   TCGA-CG-4304                    TCGA-CG-4305 
"AMP PEAK  3(1Q42.3) WILD-TYPE" "AMP PEAK  3(1Q42.3) WILD-TYPE" 
                   TCGA-CG-4306                    TCGA-CG-4436 
"AMP PEAK  3(1Q42.3) WILD-TYPE"   "AMP PEAK  3(1Q42.3) MUTATED" 
                   TCGA-CG-4437                    TCGA-CG-4438 
"AMP PEAK  3(1Q42.3) WILD-TYPE"   "AMP PEAK  3(1Q42.3) MUTATED" 
                   TCGA-CG-4440                    TCGA-CG-4441 
"AMP PEAK  3(1Q42.3) WILD-TYPE" "AMP PEAK  3(1Q42.3) WILD-TYPE" 
                   TCGA-CG-4443                    TCGA-CG-4444 
"AMP PEAK  3(1Q42.3) WILD-TYPE" "AMP PEAK  3(1Q42.3) WILD-TYPE" 
                   TCGA-CG-4449                    TCGA-CG-4455 
  "AMP PEAK  3(1Q42.3) MUTATED" "AMP PEAK  3(1Q42.3) WILD-TYPE" 
                   TCGA-CG-4460                    TCGA-CG-4462 
  "AMP PEAK  3(1Q42.3) MUTATED" "AMP PEAK  3(1Q42.3) WILD-TYPE" 
                   TCGA-CG-4465                    TCGA-CG-4466 
"AMP PEAK  3(1Q42.3) WILD-TYPE"   "AMP PEAK  3(1Q42.3) MUTATED" 
                   TCGA-CG-4469                    TCGA-CG-4472 
  "AMP PEAK  3(1Q42.3) MUTATED"   "AMP PEAK  3(1Q42.3) MUTATED" 
                   TCGA-CG-4474                    TCGA-CG-4477 
"AMP PEAK  3(1Q42.3) WILD-TYPE" "AMP PEAK  3(1Q42.3) WILD-TYPE" 
                   TCGA-CG-5716                    TCGA-CG-5717 
"AMP PEAK  3(1Q42.3) WILD-TYPE" "AMP PEAK  3(1Q42.3) WILD-TYPE" 
                   TCGA-CG-5718                    TCGA-CG-5719 
"AMP PEAK  3(1Q42.3) WILD-TYPE"   "AMP PEAK  3(1Q42.3) MUTATED" 
                   TCGA-CG-5720                    TCGA-CG-5721 
"AMP PEAK  3(1Q42.3) WILD-TYPE" "AMP PEAK  3(1Q42.3) WILD-TYPE" 
                   TCGA-CG-5722                    TCGA-CG-5723 
"AMP PEAK  3(1Q42.3) WILD-TYPE" "AMP PEAK  3(1Q42.3) WILD-TYPE" 
                   TCGA-CG-5724                    TCGA-CG-5725 
"AMP PEAK  3(1Q42.3) WILD-TYPE" "AMP PEAK  3(1Q42.3) WILD-TYPE" 
                   TCGA-CG-5726                    TCGA-CG-5727 
"AMP PEAK  3(1Q42.3) WILD-TYPE" "AMP PEAK  3(1Q42.3) WILD-TYPE" 
                   TCGA-CG-5728                    TCGA-CG-5730 
"AMP PEAK  3(1Q42.3) WILD-TYPE"   "AMP PEAK  3(1Q42.3) MUTATED" 
                   TCGA-CG-5732                    TCGA-CG-5733 
"AMP PEAK  3(1Q42.3) WILD-TYPE" "AMP PEAK  3(1Q42.3) WILD-TYPE" 
                   TCGA-CG-5734                    TCGA-D7-5577 
"AMP PEAK  3(1Q42.3) WILD-TYPE" "AMP PEAK  3(1Q42.3) WILD-TYPE" 
                   TCGA-D7-5578                    TCGA-D7-5579 
  "AMP PEAK  3(1Q42.3) MUTATED"   "AMP PEAK  3(1Q42.3) MUTATED" 
                   TCGA-D7-6518                    TCGA-D7-6519 
"AMP PEAK  3(1Q42.3) WILD-TYPE" "AMP PEAK  3(1Q42.3) WILD-TYPE" 
                   TCGA-D7-6520                    TCGA-D7-6521 
  "AMP PEAK  3(1Q42.3) MUTATED"   "AMP PEAK  3(1Q42.3) MUTATED" 
                   TCGA-D7-6522                    TCGA-D7-6524 
"AMP PEAK  3(1Q42.3) WILD-TYPE" "AMP PEAK  3(1Q42.3) WILD-TYPE" 
                   TCGA-D7-6525                    TCGA-D7-6526 
"AMP PEAK  3(1Q42.3) WILD-TYPE"   "AMP PEAK  3(1Q42.3) MUTATED" 
                   TCGA-D7-6527                    TCGA-D7-6528 
  "AMP PEAK  3(1Q42.3) MUTATED" "AMP PEAK  3(1Q42.3) WILD-TYPE" 
                   TCGA-D7-6815                    TCGA-D7-6817 
"AMP PEAK  3(1Q42.3) WILD-TYPE"   "AMP PEAK  3(1Q42.3) MUTATED" 
                   TCGA-D7-6818                    TCGA-D7-6820 
  "AMP PEAK  3(1Q42.3) MUTATED"   "AMP PEAK  3(1Q42.3) MUTATED" 
                   TCGA-D7-6822                    TCGA-EQ-5647 
  "AMP PEAK  3(1Q42.3) MUTATED"   "AMP PEAK  3(1Q42.3) MUTATED" 
                   TCGA-EQ-8122                    TCGA-F1-6177 
"AMP PEAK  3(1Q42.3) WILD-TYPE" "AMP PEAK  3(1Q42.3) WILD-TYPE" 
                   TCGA-F1-6874                    TCGA-F1-6875 
"AMP PEAK  3(1Q42.3) WILD-TYPE"   "AMP PEAK  3(1Q42.3) MUTATED" 
                   TCGA-FP-7735                    TCGA-FP-7829 
  "AMP PEAK  3(1Q42.3) MUTATED" "AMP PEAK  3(1Q42.3) WILD-TYPE" 
                   TCGA-FP-7916                    TCGA-FP-7998 
  "AMP PEAK  3(1Q42.3) MUTATED" "AMP PEAK  3(1Q42.3) WILD-TYPE" 
                   TCGA-HJ-7597                    TCGA-IN-7806 
  "AMP PEAK  3(1Q42.3) MUTATED" "AMP PEAK  3(1Q42.3) WILD-TYPE" 
                   TCGA-IN-7808                    TCGA-IP-7968 
  "AMP PEAK  3(1Q42.3) MUTATED" "AMP PEAK  3(1Q42.3) WILD-TYPE" 
                   TCGA-B7-5816                    TCGA-B7-5818 
"AMP PEAK  3(1Q42.3) WILD-TYPE" "AMP PEAK  3(1Q42.3) WILD-TYPE" 
                   TCGA-BR-6452                    TCGA-BR-6455 
"AMP PEAK  3(1Q42.3) WILD-TYPE" "AMP PEAK  3(1Q42.3) WILD-TYPE" 
                   TCGA-BR-6457                    TCGA-BR-6458 
"AMP PEAK  3(1Q42.3) WILD-TYPE"   "AMP PEAK  3(1Q42.3) MUTATED" 
                   TCGA-BR-6563                    TCGA-BR-6564 
"AMP PEAK  3(1Q42.3) WILD-TYPE" "AMP PEAK  3(1Q42.3) WILD-TYPE" 
                   TCGA-BR-6565                    TCGA-BR-6566 
  "AMP PEAK  3(1Q42.3) MUTATED" "AMP PEAK  3(1Q42.3) WILD-TYPE" 
                   TCGA-BR-6705                    TCGA-BR-6706 
  "AMP PEAK  3(1Q42.3) MUTATED" "AMP PEAK  3(1Q42.3) WILD-TYPE" 
                   TCGA-BR-6707                    TCGA-BR-6709 
"AMP PEAK  3(1Q42.3) WILD-TYPE" "AMP PEAK  3(1Q42.3) WILD-TYPE" 
                   TCGA-BR-6710                    TCGA-BR-6801 
"AMP PEAK  3(1Q42.3) WILD-TYPE" "AMP PEAK  3(1Q42.3) WILD-TYPE" 
                   TCGA-BR-6802                    TCGA-BR-6803 
"AMP PEAK  3(1Q42.3) WILD-TYPE" "AMP PEAK  3(1Q42.3) WILD-TYPE" 
                   TCGA-BR-6852                    TCGA-BR-7196 
"AMP PEAK  3(1Q42.3) WILD-TYPE" "AMP PEAK  3(1Q42.3) WILD-TYPE" 
                   TCGA-BR-7197                    TCGA-BR-7703 
  "AMP PEAK  3(1Q42.3) MUTATED" "AMP PEAK  3(1Q42.3) WILD-TYPE" 
                   TCGA-BR-7704                    TCGA-BR-7707 
"AMP PEAK  3(1Q42.3) WILD-TYPE" "AMP PEAK  3(1Q42.3) WILD-TYPE" 
                   TCGA-BR-7715                    TCGA-BR-7716 
  "AMP PEAK  3(1Q42.3) MUTATED"   "AMP PEAK  3(1Q42.3) MUTATED" 
                   TCGA-BR-7717                    TCGA-BR-7722 
  "AMP PEAK  3(1Q42.3) MUTATED" "AMP PEAK  3(1Q42.3) WILD-TYPE" 
                   TCGA-BR-7723                    TCGA-BR-7851 
  "AMP PEAK  3(1Q42.3) MUTATED" "AMP PEAK  3(1Q42.3) WILD-TYPE" 
                   TCGA-BR-7901                    TCGA-BR-7957 
"AMP PEAK  3(1Q42.3) WILD-TYPE" "AMP PEAK  3(1Q42.3) WILD-TYPE" 
                   TCGA-BR-7958                    TCGA-BR-7959 
"AMP PEAK  3(1Q42.3) WILD-TYPE" "AMP PEAK  3(1Q42.3) WILD-TYPE" 
                   TCGA-BR-8059                    TCGA-BR-8060 
"AMP PEAK  3(1Q42.3) WILD-TYPE" "AMP PEAK  3(1Q42.3) WILD-TYPE" 
                   TCGA-BR-8077                    TCGA-BR-8078 
"AMP PEAK  3(1Q42.3) WILD-TYPE" "AMP PEAK  3(1Q42.3) WILD-TYPE" 
                   TCGA-BR-8080                    TCGA-BR-8081 
"AMP PEAK  3(1Q42.3) WILD-TYPE" "AMP PEAK  3(1Q42.3) WILD-TYPE" 
                   TCGA-BR-8284                    TCGA-BR-8285 
"AMP PEAK  3(1Q42.3) WILD-TYPE" "AMP PEAK  3(1Q42.3) WILD-TYPE" 
                   TCGA-BR-8286                    TCGA-BR-8289 
"AMP PEAK  3(1Q42.3) WILD-TYPE" "AMP PEAK  3(1Q42.3) WILD-TYPE" 
                   TCGA-BR-8291                    TCGA-BR-8295 
"AMP PEAK  3(1Q42.3) WILD-TYPE" "AMP PEAK  3(1Q42.3) WILD-TYPE" 
                   TCGA-BR-8296                    TCGA-BR-8297 
"AMP PEAK  3(1Q42.3) WILD-TYPE" "AMP PEAK  3(1Q42.3) WILD-TYPE" 
                   TCGA-CD-5798                    TCGA-CD-5799 
"AMP PEAK  3(1Q42.3) WILD-TYPE" "AMP PEAK  3(1Q42.3) WILD-TYPE" 
                   TCGA-CD-5800                    TCGA-CD-5801 
  "AMP PEAK  3(1Q42.3) MUTATED" "AMP PEAK  3(1Q42.3) WILD-TYPE" 
                   TCGA-CD-5802                    TCGA-CD-5803 
"AMP PEAK  3(1Q42.3) WILD-TYPE" "AMP PEAK  3(1Q42.3) WILD-TYPE" 
                   TCGA-CG-4300                    TCGA-CG-4301 
"AMP PEAK  3(1Q42.3) WILD-TYPE" "AMP PEAK  3(1Q42.3) WILD-TYPE" 
                   TCGA-CG-4304                    TCGA-CG-4305 
"AMP PEAK  3(1Q42.3) WILD-TYPE" "AMP PEAK  3(1Q42.3) WILD-TYPE" 
                   TCGA-CG-4306                    TCGA-CG-4436 
"AMP PEAK  3(1Q42.3) WILD-TYPE"   "AMP PEAK  3(1Q42.3) MUTATED" 
                   TCGA-CG-4437                    TCGA-CG-4438 
"AMP PEAK  3(1Q42.3) WILD-TYPE"   "AMP PEAK  3(1Q42.3) MUTATED" 
                   TCGA-CG-4440                    TCGA-CG-4441 
"AMP PEAK  3(1Q42.3) WILD-TYPE" "AMP PEAK  3(1Q42.3) WILD-TYPE" 
                   TCGA-CG-4443                    TCGA-CG-4444 
"AMP PEAK  3(1Q42.3) WILD-TYPE" "AMP PEAK  3(1Q42.3) WILD-TYPE" 
                   TCGA-CG-4449                    TCGA-CG-4455 
  "AMP PEAK  3(1Q42.3) MUTATED" "AMP PEAK  3(1Q42.3) WILD-TYPE" 
                   TCGA-CG-4460                    TCGA-CG-4462 
  "AMP PEAK  3(1Q42.3) MUTATED" "AMP PEAK  3(1Q42.3) WILD-TYPE" 
                   TCGA-CG-4465                    TCGA-CG-4466 
"AMP PEAK  3(1Q42.3) WILD-TYPE"   "AMP PEAK  3(1Q42.3) MUTATED" 
                   TCGA-CG-4469                    TCGA-CG-4472 
  "AMP PEAK  3(1Q42.3) MUTATED"   "AMP PEAK  3(1Q42.3) MUTATED" 
                   TCGA-CG-4474                    TCGA-CG-4477 
"AMP PEAK  3(1Q42.3) WILD-TYPE" "AMP PEAK  3(1Q42.3) WILD-TYPE" 
                   TCGA-CG-5716                    TCGA-CG-5717 
"AMP PEAK  3(1Q42.3) WILD-TYPE" "AMP PEAK  3(1Q42.3) WILD-TYPE" 
                   TCGA-CG-5718                    TCGA-CG-5719 
"AMP PEAK  3(1Q42.3) WILD-TYPE"   "AMP PEAK  3(1Q42.3) MUTATED" 
                   TCGA-CG-5720                    TCGA-CG-5721 
"AMP PEAK  3(1Q42.3) WILD-TYPE" "AMP PEAK  3(1Q42.3) WILD-TYPE" 
                   TCGA-CG-5722                    TCGA-CG-5723 
"AMP PEAK  3(1Q42.3) WILD-TYPE" "AMP PEAK  3(1Q42.3) WILD-TYPE" 
                   TCGA-CG-5724                    TCGA-CG-5725 
"AMP PEAK  3(1Q42.3) WILD-TYPE" "AMP PEAK  3(1Q42.3) WILD-TYPE" 
                   TCGA-CG-5726                    TCGA-CG-5727 
"AMP PEAK  3(1Q42.3) WILD-TYPE" "AMP PEAK  3(1Q42.3) WILD-TYPE" 
                   TCGA-CG-5728                    TCGA-CG-5730 
"AMP PEAK  3(1Q42.3) WILD-TYPE"   "AMP PEAK  3(1Q42.3) MUTATED" 
                   TCGA-CG-5732                    TCGA-CG-5733 
"AMP PEAK  3(1Q42.3) WILD-TYPE" "AMP PEAK  3(1Q42.3) WILD-TYPE" 
                   TCGA-CG-5734                    TCGA-D7-5577 
"AMP PEAK  3(1Q42.3) WILD-TYPE" "AMP PEAK  3(1Q42.3) WILD-TYPE" 
                   TCGA-D7-5578                    TCGA-D7-5579 
  "AMP PEAK  3(1Q42.3) MUTATED"   "AMP PEAK  3(1Q42.3) MUTATED" 
                   TCGA-D7-6518                    TCGA-D7-6519 
"AMP PEAK  3(1Q42.3) WILD-TYPE" "AMP PEAK  3(1Q42.3) WILD-TYPE" 
                   TCGA-D7-6520                    TCGA-D7-6521 
  "AMP PEAK  3(1Q42.3) MUTATED"   "AMP PEAK  3(1Q42.3) MUTATED" 
                   TCGA-D7-6522                    TCGA-D7-6524 
"AMP PEAK  3(1Q42.3) WILD-TYPE" "AMP PEAK  3(1Q42.3) WILD-TYPE" 
                   TCGA-D7-6525                    TCGA-D7-6526 
"AMP PEAK  3(1Q42.3) WILD-TYPE"   "AMP PEAK  3(1Q42.3) MUTATED" 
                   TCGA-D7-6527                    TCGA-D7-6528 
  "AMP PEAK  3(1Q42.3) MUTATED" "AMP PEAK  3(1Q42.3) WILD-TYPE" 
                   TCGA-D7-6815                    TCGA-D7-6817 
"AMP PEAK  3(1Q42.3) WILD-TYPE"   "AMP PEAK  3(1Q42.3) MUTATED" 
                   TCGA-D7-6818                    TCGA-D7-6820 
  "AMP PEAK  3(1Q42.3) MUTATED"   "AMP PEAK  3(1Q42.3) MUTATED" 
                   TCGA-D7-6822                    TCGA-EQ-5647 
  "AMP PEAK  3(1Q42.3) MUTATED"   "AMP PEAK  3(1Q42.3) MUTATED" 
                   TCGA-EQ-8122                    TCGA-F1-6177 
"AMP PEAK  3(1Q42.3) WILD-TYPE" "AMP PEAK  3(1Q42.3) WILD-TYPE" 
                   TCGA-F1-6874                    TCGA-F1-6875 
"AMP PEAK  3(1Q42.3) WILD-TYPE"   "AMP PEAK  3(1Q42.3) MUTATED" 
                   TCGA-FP-7735                    TCGA-FP-7829 
  "AMP PEAK  3(1Q42.3) MUTATED" "AMP PEAK  3(1Q42.3) WILD-TYPE" 
                   TCGA-FP-7916                    TCGA-FP-7998 
  "AMP PEAK  3(1Q42.3) MUTATED" "AMP PEAK  3(1Q42.3) WILD-TYPE" 
                   TCGA-HJ-7597                    TCGA-IN-7806 
  "AMP PEAK  3(1Q42.3) MUTATED" "AMP PEAK  3(1Q42.3) WILD-TYPE" 
                   TCGA-IN-7808                    TCGA-IP-7968 
  "AMP PEAK  3(1Q42.3) MUTATED" "AMP PEAK  3(1Q42.3) WILD-TYPE" 
                   TCGA-B7-5816                    TCGA-B7-5818 
"AMP PEAK  3(1Q42.3) WILD-TYPE" "AMP PEAK  3(1Q42.3) WILD-TYPE" 
                   TCGA-BR-6452                    TCGA-BR-6455 
"AMP PEAK  3(1Q42.3) WILD-TYPE" "AMP PEAK  3(1Q42.3) WILD-TYPE" 
                   TCGA-BR-6457                    TCGA-BR-6458 
"AMP PEAK  3(1Q42.3) WILD-TYPE"   "AMP PEAK  3(1Q42.3) MUTATED" 
                   TCGA-BR-6563                    TCGA-BR-6564 
"AMP PEAK  3(1Q42.3) WILD-TYPE" "AMP PEAK  3(1Q42.3) WILD-TYPE" 
                   TCGA-BR-6565                    TCGA-BR-6566 
  "AMP PEAK  3(1Q42.3) MUTATED" "AMP PEAK  3(1Q42.3) WILD-TYPE" 
                   TCGA-BR-6705                    TCGA-BR-6706 
  "AMP PEAK  3(1Q42.3) MUTATED" "AMP PEAK  3(1Q42.3) WILD-TYPE" 
                   TCGA-BR-6707                    TCGA-BR-6709 
"AMP PEAK  3(1Q42.3) WILD-TYPE" "AMP PEAK  3(1Q42.3) WILD-TYPE" 
                   TCGA-BR-6710                    TCGA-BR-6801 
"AMP PEAK  3(1Q42.3) WILD-TYPE" "AMP PEAK  3(1Q42.3) WILD-TYPE" 
                   TCGA-BR-6802                    TCGA-BR-6803 
"AMP PEAK  3(1Q42.3) WILD-TYPE" "AMP PEAK  3(1Q42.3) WILD-TYPE" 
                   TCGA-BR-6852                    TCGA-BR-7196 
"AMP PEAK  3(1Q42.3) WILD-TYPE" "AMP PEAK  3(1Q42.3) WILD-TYPE" 
                   TCGA-BR-7197                    TCGA-BR-7703 
  "AMP PEAK  3(1Q42.3) MUTATED" "AMP PEAK  3(1Q42.3) WILD-TYPE" 
                   TCGA-BR-7704                    TCGA-BR-7707 
"AMP PEAK  3(1Q42.3) WILD-TYPE" "AMP PEAK  3(1Q42.3) WILD-TYPE" 
                   TCGA-BR-7715                    TCGA-BR-7716 
  "AMP PEAK  3(1Q42.3) MUTATED"   "AMP PEAK  3(1Q42.3) MUTATED" 
                   TCGA-BR-7717                    TCGA-BR-7722 
  "AMP PEAK  3(1Q42.3) MUTATED" "AMP PEAK  3(1Q42.3) WILD-TYPE" 
                   TCGA-BR-7723                    TCGA-BR-7851 
  "AMP PEAK  3(1Q42.3) MUTATED" "AMP PEAK  3(1Q42.3) WILD-TYPE" 
                   TCGA-BR-7901                    TCGA-BR-7957 
"AMP PEAK  3(1Q42.3) WILD-TYPE" "AMP PEAK  3(1Q42.3) WILD-TYPE" 
                   TCGA-BR-7958                    TCGA-BR-7959 
"AMP PEAK  3(1Q42.3) WILD-TYPE" "AMP PEAK  3(1Q42.3) WILD-TYPE" 
                   TCGA-BR-8059                    TCGA-BR-8060 
"AMP PEAK  3(1Q42.3) WILD-TYPE" "AMP PEAK  3(1Q42.3) WILD-TYPE" 
                   TCGA-BR-8077                    TCGA-BR-8078 
"AMP PEAK  3(1Q42.3) WILD-TYPE" "AMP PEAK  3(1Q42.3) WILD-TYPE" 
                   TCGA-BR-8080                    TCGA-BR-8081 
"AMP PEAK  3(1Q42.3) WILD-TYPE" "AMP PEAK  3(1Q42.3) WILD-TYPE" 
                   TCGA-BR-8284                    TCGA-BR-8285 
"AMP PEAK  3(1Q42.3) WILD-TYPE" "AMP PEAK  3(1Q42.3) WILD-TYPE" 
                   TCGA-BR-8286                    TCGA-BR-8289 
"AMP PEAK  3(1Q42.3) WILD-TYPE" "AMP PEAK  3(1Q42.3) WILD-TYPE" 
                   TCGA-BR-8291                    TCGA-BR-8295 
"AMP PEAK  3(1Q42.3) WILD-TYPE" "AMP PEAK  3(1Q42.3) WILD-TYPE" 
                   TCGA-BR-8296                    TCGA-BR-8297 
"AMP PEAK  3(1Q42.3) WILD-TYPE" "AMP PEAK  3(1Q42.3) WILD-TYPE" 
                   TCGA-CD-5798                    TCGA-CD-5799 
"AMP PEAK  3(1Q42.3) WILD-TYPE" "AMP PEAK  3(1Q42.3) WILD-TYPE" 
                   TCGA-CD-5800                    TCGA-CD-5801 
  "AMP PEAK  3(1Q42.3) MUTATED" "AMP PEAK  3(1Q42.3) WILD-TYPE" 
                   TCGA-CD-5802                    TCGA-CD-5803 
"AMP PEAK  3(1Q42.3) WILD-TYPE" "AMP PEAK  3(1Q42.3) WILD-TYPE" 
                   TCGA-CG-4300                    TCGA-CG-4301 
"AMP PEAK  3(1Q42.3) WILD-TYPE" "AMP PEAK  3(1Q42.3) WILD-TYPE" 
                   TCGA-CG-4304                    TCGA-CG-4305 
"AMP PEAK  3(1Q42.3) WILD-TYPE" "AMP PEAK  3(1Q42.3) WILD-TYPE" 
                   TCGA-CG-4306                    TCGA-CG-4436 
"AMP PEAK  3(1Q42.3) WILD-TYPE"   "AMP PEAK  3(1Q42.3) MUTATED" 
                   TCGA-CG-4437                    TCGA-CG-4438 
"AMP PEAK  3(1Q42.3) WILD-TYPE"   "AMP PEAK  3(1Q42.3) MUTATED" 
                   TCGA-CG-4440                    TCGA-CG-4441 
"AMP PEAK  3(1Q42.3) WILD-TYPE" "AMP PEAK  3(1Q42.3) WILD-TYPE" 
                   TCGA-CG-4443                    TCGA-CG-4444 
"AMP PEAK  3(1Q42.3) WILD-TYPE" "AMP PEAK  3(1Q42.3) WILD-TYPE" 
                   TCGA-CG-4449                    TCGA-CG-4455 
  "AMP PEAK  3(1Q42.3) MUTATED" "AMP PEAK  3(1Q42.3) WILD-TYPE" 
                   TCGA-CG-4460                    TCGA-CG-4462 
  "AMP PEAK  3(1Q42.3) MUTATED" "AMP PEAK  3(1Q42.3) WILD-TYPE" 
                   TCGA-CG-4465                    TCGA-CG-4466 
"AMP PEAK  3(1Q42.3) WILD-TYPE"   "AMP PEAK  3(1Q42.3) MUTATED" 
                   TCGA-CG-4469                    TCGA-CG-4472 
  "AMP PEAK  3(1Q42.3) MUTATED"   "AMP PEAK  3(1Q42.3) MUTATED" 
                   TCGA-CG-4474                    TCGA-CG-4477 
"AMP PEAK  3(1Q42.3) WILD-TYPE" "AMP PEAK  3(1Q42.3) WILD-TYPE" 
                   TCGA-CG-5716                    TCGA-CG-5717 
"AMP PEAK  3(1Q42.3) WILD-TYPE" "AMP PEAK  3(1Q42.3) WILD-TYPE" 
                   TCGA-CG-5718                    TCGA-CG-5719 
"AMP PEAK  3(1Q42.3) WILD-TYPE"   "AMP PEAK  3(1Q42.3) MUTATED" 
                   TCGA-CG-5720                    TCGA-CG-5721 
"AMP PEAK  3(1Q42.3) WILD-TYPE" "AMP PEAK  3(1Q42.3) WILD-TYPE" 
                   TCGA-CG-5722                    TCGA-CG-5723 
"AMP PEAK  3(1Q42.3) WILD-TYPE" "AMP PEAK  3(1Q42.3) WILD-TYPE" 
                   TCGA-CG-5724                    TCGA-CG-5725 
"AMP PEAK  3(1Q42.3) WILD-TYPE" "AMP PEAK  3(1Q42.3) WILD-TYPE" 
                   TCGA-CG-5726                    TCGA-CG-5727 
"AMP PEAK  3(1Q42.3) WILD-TYPE" "AMP PEAK  3(1Q42.3) WILD-TYPE" 
                   TCGA-CG-5728                    TCGA-CG-5730 
"AMP PEAK  3(1Q42.3) WILD-TYPE"   "AMP PEAK  3(1Q42.3) MUTATED" 
                   TCGA-CG-5732                    TCGA-CG-5733 
"AMP PEAK  3(1Q42.3) WILD-TYPE" "AMP PEAK  3(1Q42.3) WILD-TYPE" 
                   TCGA-CG-5734                    TCGA-D7-5577 
"AMP PEAK  3(1Q42.3) WILD-TYPE" "AMP PEAK  3(1Q42.3) WILD-TYPE" 
                   TCGA-D7-5578                    TCGA-D7-5579 
  "AMP PEAK  3(1Q42.3) MUTATED"   "AMP PEAK  3(1Q42.3) MUTATED" 
                   TCGA-D7-6518                    TCGA-D7-6519 
"AMP PEAK  3(1Q42.3) WILD-TYPE" "AMP PEAK  3(1Q42.3) WILD-TYPE" 
                   TCGA-D7-6520                    TCGA-D7-6521 
  "AMP PEAK  3(1Q42.3) MUTATED"   "AMP PEAK  3(1Q42.3) MUTATED" 
                   TCGA-D7-6522                    TCGA-D7-6524 
"AMP PEAK  3(1Q42.3) WILD-TYPE" "AMP PEAK  3(1Q42.3) WILD-TYPE" 
                   TCGA-D7-6525                    TCGA-D7-6526 
"AMP PEAK  3(1Q42.3) WILD-TYPE"   "AMP PEAK  3(1Q42.3) MUTATED" 
                   TCGA-D7-6527                    TCGA-D7-6528 
  "AMP PEAK  3(1Q42.3) MUTATED" "AMP PEAK  3(1Q42.3) WILD-TYPE" 
                   TCGA-D7-6815                    TCGA-D7-6817 
"AMP PEAK  3(1Q42.3) WILD-TYPE"   "AMP PEAK  3(1Q42.3) MUTATED" 
                   TCGA-D7-6818                    TCGA-D7-6820 
  "AMP PEAK  3(1Q42.3) MUTATED"   "AMP PEAK  3(1Q42.3) MUTATED" 
                   TCGA-D7-6822                    TCGA-EQ-5647 
  "AMP PEAK  3(1Q42.3) MUTATED"   "AMP PEAK  3(1Q42.3) MUTATED" 
                   TCGA-EQ-8122                    TCGA-F1-6177 
"AMP PEAK  3(1Q42.3) WILD-TYPE" "AMP PEAK  3(1Q42.3) WILD-TYPE" 
                   TCGA-F1-6874                    TCGA-F1-6875 
"AMP PEAK  3(1Q42.3) WILD-TYPE"   "AMP PEAK  3(1Q42.3) MUTATED" 
                   TCGA-FP-7735                    TCGA-FP-7829 
  "AMP PEAK  3(1Q42.3) MUTATED" "AMP PEAK  3(1Q42.3) WILD-TYPE" 
                   TCGA-FP-7916                    TCGA-FP-7998 
  "AMP PEAK  3(1Q42.3) MUTATED" "AMP PEAK  3(1Q42.3) WILD-TYPE" 
                   TCGA-HJ-7597                    TCGA-IN-7806 
  "AMP PEAK  3(1Q42.3) MUTATED" "AMP PEAK  3(1Q42.3) WILD-TYPE" 
                   TCGA-IN-7808                    TCGA-IP-7968 
  "AMP PEAK  3(1Q42.3) MUTATED" "AMP PEAK  3(1Q42.3) WILD-TYPE" 
[1] "hr=" "1.4"
D3V2, continuous
D3V3, binary
[1] "tbl2"
                               cls
clus                            [,1] [,2]
  AMP PEAK  3(1Q42.3) MUTATED     16   31
  AMP PEAK  3(1Q42.3) WILD-TYPE   49   65
        clus
vv       AMP PEAK  3(1Q42.3) MUTATED AMP PEAK  3(1Q42.3) WILD-TYPE
  FEMALE                          16                            49
  MALE                            31                            65
D3V4, multiclass
D3V5, multiclass
    clus
vv   AMP PEAK  3(1Q42.3) MUTATED AMP PEAK  3(1Q42.3) WILD-TYPE
  T1                           1                             5
  T2                          18                            35
  T3                          17                            42
  T4                           8                            25
D3V6, multiclass
    clus
vv   AMP PEAK  3(1Q42.3) MUTATED AMP PEAK  3(1Q42.3) WILD-TYPE
  N0                          15                            35
  N1                          12                            45
  N2                           8                            16
  N3                           6                            13
D3V7, multiclass
    clus
vv   AMP PEAK  3(1Q42.3) MUTATED AMP PEAK  3(1Q42.3) WILD-TYPE
  M0                          37                            95
  M1                           5                            13
  MX                           5                             6
D3V8, multiclass
     clus
vv    AMP PEAK  3(1Q42.3) MUTATED AMP PEAK  3(1Q42.3) WILD-TYPE
  I                             9                            16
  II                           12                            31
  III                          10                            38
  IV                           10                            19
D3V9, binary
[1] "tbl2"
                               cls
clus                            [,1] [,2]
  AMP PEAK  3(1Q42.3) MUTATED     44    3
  AMP PEAK  3(1Q42.3) WILD-TYPE  112    2
     clus
vv    AMP PEAK  3(1Q42.3) MUTATED AMP PEAK  3(1Q42.3) WILD-TYPE
  NO                            3                             2
  YES                          44                           112

Clustering(4) Variable = Amp Peak  4(3q26.31) mutation analysis
D4V1, survival
                    TCGA-B7-5816                     TCGA-B7-5818 
  "AMP PEAK  4(3Q26.31) MUTATED"   "AMP PEAK  4(3Q26.31) MUTATED" 
                    TCGA-BR-6452                     TCGA-BR-6455 
  "AMP PEAK  4(3Q26.31) MUTATED" "AMP PEAK  4(3Q26.31) WILD-TYPE" 
                    TCGA-BR-6457                     TCGA-BR-6458 
"AMP PEAK  4(3Q26.31) WILD-TYPE" "AMP PEAK  4(3Q26.31) WILD-TYPE" 
                    TCGA-BR-6563                     TCGA-BR-6564 
"AMP PEAK  4(3Q26.31) WILD-TYPE" "AMP PEAK  4(3Q26.31) WILD-TYPE" 
                    TCGA-BR-6565                     TCGA-BR-6566 
  "AMP PEAK  4(3Q26.31) MUTATED" "AMP PEAK  4(3Q26.31) WILD-TYPE" 
                    TCGA-BR-6705                     TCGA-BR-6706 
"AMP PEAK  4(3Q26.31) WILD-TYPE"   "AMP PEAK  4(3Q26.31) MUTATED" 
                    TCGA-BR-6707                     TCGA-BR-6709 
"AMP PEAK  4(3Q26.31) WILD-TYPE" "AMP PEAK  4(3Q26.31) WILD-TYPE" 
                    TCGA-BR-6710                     TCGA-BR-6801 
"AMP PEAK  4(3Q26.31) WILD-TYPE"   "AMP PEAK  4(3Q26.31) MUTATED" 
                    TCGA-BR-6802                     TCGA-BR-6803 
  "AMP PEAK  4(3Q26.31) MUTATED" "AMP PEAK  4(3Q26.31) WILD-TYPE" 
                    TCGA-BR-6852                     TCGA-BR-7196 
"AMP PEAK  4(3Q26.31) WILD-TYPE"   "AMP PEAK  4(3Q26.31) MUTATED" 
                    TCGA-BR-7197                     TCGA-BR-7703 
"AMP PEAK  4(3Q26.31) WILD-TYPE" "AMP PEAK  4(3Q26.31) WILD-TYPE" 
                    TCGA-BR-7704                     TCGA-BR-7707 
"AMP PEAK  4(3Q26.31) WILD-TYPE" "AMP PEAK  4(3Q26.31) WILD-TYPE" 
                    TCGA-BR-7715                     TCGA-BR-7716 
"AMP PEAK  4(3Q26.31) WILD-TYPE" "AMP PEAK  4(3Q26.31) WILD-TYPE" 
                    TCGA-BR-7717                     TCGA-BR-7722 
"AMP PEAK  4(3Q26.31) WILD-TYPE"   "AMP PEAK  4(3Q26.31) MUTATED" 
                    TCGA-BR-7723                     TCGA-BR-7851 
  "AMP PEAK  4(3Q26.31) MUTATED" "AMP PEAK  4(3Q26.31) WILD-TYPE" 
                    TCGA-BR-7901                     TCGA-BR-7957 
  "AMP PEAK  4(3Q26.31) MUTATED" "AMP PEAK  4(3Q26.31) WILD-TYPE" 
                    TCGA-BR-7958                     TCGA-BR-7959 
"AMP PEAK  4(3Q26.31) WILD-TYPE" "AMP PEAK  4(3Q26.31) WILD-TYPE" 
                    TCGA-BR-8059                     TCGA-BR-8060 
"AMP PEAK  4(3Q26.31) WILD-TYPE" "AMP PEAK  4(3Q26.31) WILD-TYPE" 
                    TCGA-BR-8077                     TCGA-BR-8078 
"AMP PEAK  4(3Q26.31) WILD-TYPE" "AMP PEAK  4(3Q26.31) WILD-TYPE" 
                    TCGA-BR-8080                     TCGA-BR-8081 
"AMP PEAK  4(3Q26.31) WILD-TYPE" "AMP PEAK  4(3Q26.31) WILD-TYPE" 
                    TCGA-BR-8284                     TCGA-BR-8285 
"AMP PEAK  4(3Q26.31) WILD-TYPE" "AMP PEAK  4(3Q26.31) WILD-TYPE" 
                    TCGA-BR-8286                     TCGA-BR-8289 
"AMP PEAK  4(3Q26.31) WILD-TYPE" "AMP PEAK  4(3Q26.31) WILD-TYPE" 
                    TCGA-BR-8291                     TCGA-BR-8295 
"AMP PEAK  4(3Q26.31) WILD-TYPE" "AMP PEAK  4(3Q26.31) WILD-TYPE" 
                    TCGA-BR-8296                     TCGA-BR-8297 
"AMP PEAK  4(3Q26.31) WILD-TYPE" "AMP PEAK  4(3Q26.31) WILD-TYPE" 
                    TCGA-CD-5798                     TCGA-CD-5799 
"AMP PEAK  4(3Q26.31) WILD-TYPE"   "AMP PEAK  4(3Q26.31) MUTATED" 
                    TCGA-CD-5800                     TCGA-CD-5801 
"AMP PEAK  4(3Q26.31) WILD-TYPE"   "AMP PEAK  4(3Q26.31) MUTATED" 
                    TCGA-CD-5802                     TCGA-CD-5803 
"AMP PEAK  4(3Q26.31) WILD-TYPE" "AMP PEAK  4(3Q26.31) WILD-TYPE" 
                    TCGA-CG-4300                     TCGA-CG-4301 
"AMP PEAK  4(3Q26.31) WILD-TYPE"   "AMP PEAK  4(3Q26.31) MUTATED" 
                    TCGA-CG-4304                     TCGA-CG-4305 
"AMP PEAK  4(3Q26.31) WILD-TYPE"   "AMP PEAK  4(3Q26.31) MUTATED" 
                    TCGA-CG-4306                     TCGA-CG-4436 
"AMP PEAK  4(3Q26.31) WILD-TYPE"   "AMP PEAK  4(3Q26.31) MUTATED" 
                    TCGA-CG-4437                     TCGA-CG-4438 
  "AMP PEAK  4(3Q26.31) MUTATED" "AMP PEAK  4(3Q26.31) WILD-TYPE" 
                    TCGA-CG-4440                     TCGA-CG-4441 
"AMP PEAK  4(3Q26.31) WILD-TYPE" "AMP PEAK  4(3Q26.31) WILD-TYPE" 
                    TCGA-CG-4443                     TCGA-CG-4444 
"AMP PEAK  4(3Q26.31) WILD-TYPE"   "AMP PEAK  4(3Q26.31) MUTATED" 
                    TCGA-CG-4449                     TCGA-CG-4455 
"AMP PEAK  4(3Q26.31) WILD-TYPE"   "AMP PEAK  4(3Q26.31) MUTATED" 
                    TCGA-CG-4460                     TCGA-CG-4462 
"AMP PEAK  4(3Q26.31) WILD-TYPE"   "AMP PEAK  4(3Q26.31) MUTATED" 
                    TCGA-CG-4465                     TCGA-CG-4466 
"AMP PEAK  4(3Q26.31) WILD-TYPE" "AMP PEAK  4(3Q26.31) WILD-TYPE" 
                    TCGA-CG-4469                     TCGA-CG-4472 
"AMP PEAK  4(3Q26.31) WILD-TYPE"   "AMP PEAK  4(3Q26.31) MUTATED" 
                    TCGA-CG-4474                     TCGA-CG-4477 
"AMP PEAK  4(3Q26.31) WILD-TYPE" "AMP PEAK  4(3Q26.31) WILD-TYPE" 
                    TCGA-CG-5716                     TCGA-CG-5717 
"AMP PEAK  4(3Q26.31) WILD-TYPE" "AMP PEAK  4(3Q26.31) WILD-TYPE" 
                    TCGA-CG-5718                     TCGA-CG-5719 
"AMP PEAK  4(3Q26.31) WILD-TYPE"   "AMP PEAK  4(3Q26.31) MUTATED" 
                    TCGA-CG-5720                     TCGA-CG-5721 
"AMP PEAK  4(3Q26.31) WILD-TYPE" "AMP PEAK  4(3Q26.31) WILD-TYPE" 
                    TCGA-CG-5722                     TCGA-CG-5723 
"AMP PEAK  4(3Q26.31) WILD-TYPE" "AMP PEAK  4(3Q26.31) WILD-TYPE" 
                    TCGA-CG-5724                     TCGA-CG-5725 
  "AMP PEAK  4(3Q26.31) MUTATED"   "AMP PEAK  4(3Q26.31) MUTATED" 
                    TCGA-CG-5726                     TCGA-CG-5727 
"AMP PEAK  4(3Q26.31) WILD-TYPE" "AMP PEAK  4(3Q26.31) WILD-TYPE" 
                    TCGA-CG-5728                     TCGA-CG-5730 
"AMP PEAK  4(3Q26.31) WILD-TYPE" "AMP PEAK  4(3Q26.31) WILD-TYPE" 
                    TCGA-CG-5732                     TCGA-CG-5733 
"AMP PEAK  4(3Q26.31) WILD-TYPE" "AMP PEAK  4(3Q26.31) WILD-TYPE" 
                    TCGA-CG-5734                     TCGA-D7-5577 
"AMP PEAK  4(3Q26.31) WILD-TYPE" "AMP PEAK  4(3Q26.31) WILD-TYPE" 
                    TCGA-D7-5578                     TCGA-D7-5579 
"AMP PEAK  4(3Q26.31) WILD-TYPE" "AMP PEAK  4(3Q26.31) WILD-TYPE" 
                    TCGA-D7-6518                     TCGA-D7-6519 
"AMP PEAK  4(3Q26.31) WILD-TYPE" "AMP PEAK  4(3Q26.31) WILD-TYPE" 
                    TCGA-D7-6520                     TCGA-D7-6521 
"AMP PEAK  4(3Q26.31) WILD-TYPE"   "AMP PEAK  4(3Q26.31) MUTATED" 
                    TCGA-D7-6522                     TCGA-D7-6524 
"AMP PEAK  4(3Q26.31) WILD-TYPE" "AMP PEAK  4(3Q26.31) WILD-TYPE" 
                    TCGA-D7-6525                     TCGA-D7-6526 
"AMP PEAK  4(3Q26.31) WILD-TYPE" "AMP PEAK  4(3Q26.31) WILD-TYPE" 
                    TCGA-D7-6527                     TCGA-D7-6528 
  "AMP PEAK  4(3Q26.31) MUTATED" "AMP PEAK  4(3Q26.31) WILD-TYPE" 
                    TCGA-D7-6815                     TCGA-D7-6817 
  "AMP PEAK  4(3Q26.31) MUTATED" "AMP PEAK  4(3Q26.31) WILD-TYPE" 
                    TCGA-D7-6818                     TCGA-D7-6820 
"AMP PEAK  4(3Q26.31) WILD-TYPE" "AMP PEAK  4(3Q26.31) WILD-TYPE" 
                    TCGA-D7-6822                     TCGA-EQ-5647 
"AMP PEAK  4(3Q26.31) WILD-TYPE"   "AMP PEAK  4(3Q26.31) MUTATED" 
                    TCGA-EQ-8122                     TCGA-F1-6177 
"AMP PEAK  4(3Q26.31) WILD-TYPE" "AMP PEAK  4(3Q26.31) WILD-TYPE" 
                    TCGA-F1-6874                     TCGA-F1-6875 
"AMP PEAK  4(3Q26.31) WILD-TYPE" "AMP PEAK  4(3Q26.31) WILD-TYPE" 
                    TCGA-FP-7735                     TCGA-FP-7829 
  "AMP PEAK  4(3Q26.31) MUTATED"   "AMP PEAK  4(3Q26.31) MUTATED" 
                    TCGA-FP-7916                     TCGA-FP-7998 
  "AMP PEAK  4(3Q26.31) MUTATED"   "AMP PEAK  4(3Q26.31) MUTATED" 
                    TCGA-HJ-7597                     TCGA-IN-7806 
  "AMP PEAK  4(3Q26.31) MUTATED" "AMP PEAK  4(3Q26.31) WILD-TYPE" 
                    TCGA-IN-7808                     TCGA-IP-7968 
"AMP PEAK  4(3Q26.31) WILD-TYPE" "AMP PEAK  4(3Q26.31) WILD-TYPE" 
                    TCGA-B7-5816                     TCGA-B7-5818 
  "AMP PEAK  4(3Q26.31) MUTATED"   "AMP PEAK  4(3Q26.31) MUTATED" 
                    TCGA-BR-6452                     TCGA-BR-6455 
  "AMP PEAK  4(3Q26.31) MUTATED" "AMP PEAK  4(3Q26.31) WILD-TYPE" 
                    TCGA-BR-6457                     TCGA-BR-6458 
"AMP PEAK  4(3Q26.31) WILD-TYPE" "AMP PEAK  4(3Q26.31) WILD-TYPE" 
                    TCGA-BR-6563                     TCGA-BR-6564 
"AMP PEAK  4(3Q26.31) WILD-TYPE" "AMP PEAK  4(3Q26.31) WILD-TYPE" 
                    TCGA-BR-6565                     TCGA-BR-6566 
  "AMP PEAK  4(3Q26.31) MUTATED" "AMP PEAK  4(3Q26.31) WILD-TYPE" 
                    TCGA-BR-6705                     TCGA-BR-6706 
"AMP PEAK  4(3Q26.31) WILD-TYPE"   "AMP PEAK  4(3Q26.31) MUTATED" 
                    TCGA-BR-6707                     TCGA-BR-6709 
"AMP PEAK  4(3Q26.31) WILD-TYPE" "AMP PEAK  4(3Q26.31) WILD-TYPE" 
                    TCGA-BR-6710                     TCGA-BR-6801 
"AMP PEAK  4(3Q26.31) WILD-TYPE"   "AMP PEAK  4(3Q26.31) MUTATED" 
                    TCGA-BR-6802                     TCGA-BR-6803 
  "AMP PEAK  4(3Q26.31) MUTATED" "AMP PEAK  4(3Q26.31) WILD-TYPE" 
                    TCGA-BR-6852                     TCGA-BR-7196 
"AMP PEAK  4(3Q26.31) WILD-TYPE"   "AMP PEAK  4(3Q26.31) MUTATED" 
                    TCGA-BR-7197                     TCGA-BR-7703 
"AMP PEAK  4(3Q26.31) WILD-TYPE" "AMP PEAK  4(3Q26.31) WILD-TYPE" 
                    TCGA-BR-7704                     TCGA-BR-7707 
"AMP PEAK  4(3Q26.31) WILD-TYPE" "AMP PEAK  4(3Q26.31) WILD-TYPE" 
                    TCGA-BR-7715                     TCGA-BR-7716 
"AMP PEAK  4(3Q26.31) WILD-TYPE" "AMP PEAK  4(3Q26.31) WILD-TYPE" 
                    TCGA-BR-7717                     TCGA-BR-7722 
"AMP PEAK  4(3Q26.31) WILD-TYPE"   "AMP PEAK  4(3Q26.31) MUTATED" 
                    TCGA-BR-7723                     TCGA-BR-7851 
  "AMP PEAK  4(3Q26.31) MUTATED" "AMP PEAK  4(3Q26.31) WILD-TYPE" 
                    TCGA-BR-7901                     TCGA-BR-7957 
  "AMP PEAK  4(3Q26.31) MUTATED" "AMP PEAK  4(3Q26.31) WILD-TYPE" 
                    TCGA-BR-7958                     TCGA-BR-7959 
"AMP PEAK  4(3Q26.31) WILD-TYPE" "AMP PEAK  4(3Q26.31) WILD-TYPE" 
                    TCGA-BR-8059                     TCGA-BR-8060 
"AMP PEAK  4(3Q26.31) WILD-TYPE" "AMP PEAK  4(3Q26.31) WILD-TYPE" 
                    TCGA-BR-8077                     TCGA-BR-8078 
"AMP PEAK  4(3Q26.31) WILD-TYPE" "AMP PEAK  4(3Q26.31) WILD-TYPE" 
                    TCGA-BR-8080                     TCGA-BR-8081 
"AMP PEAK  4(3Q26.31) WILD-TYPE" "AMP PEAK  4(3Q26.31) WILD-TYPE" 
                    TCGA-BR-8284                     TCGA-BR-8285 
"AMP PEAK  4(3Q26.31) WILD-TYPE" "AMP PEAK  4(3Q26.31) WILD-TYPE" 
                    TCGA-BR-8286                     TCGA-BR-8289 
"AMP PEAK  4(3Q26.31) WILD-TYPE" "AMP PEAK  4(3Q26.31) WILD-TYPE" 
                    TCGA-BR-8291                     TCGA-BR-8295 
"AMP PEAK  4(3Q26.31) WILD-TYPE" "AMP PEAK  4(3Q26.31) WILD-TYPE" 
                    TCGA-BR-8296                     TCGA-BR-8297 
"AMP PEAK  4(3Q26.31) WILD-TYPE" "AMP PEAK  4(3Q26.31) WILD-TYPE" 
                    TCGA-CD-5798                     TCGA-CD-5799 
"AMP PEAK  4(3Q26.31) WILD-TYPE"   "AMP PEAK  4(3Q26.31) MUTATED" 
                    TCGA-CD-5800                     TCGA-CD-5801 
"AMP PEAK  4(3Q26.31) WILD-TYPE"   "AMP PEAK  4(3Q26.31) MUTATED" 
                    TCGA-CD-5802                     TCGA-CD-5803 
"AMP PEAK  4(3Q26.31) WILD-TYPE" "AMP PEAK  4(3Q26.31) WILD-TYPE" 
                    TCGA-CG-4300                     TCGA-CG-4301 
"AMP PEAK  4(3Q26.31) WILD-TYPE"   "AMP PEAK  4(3Q26.31) MUTATED" 
                    TCGA-CG-4304                     TCGA-CG-4305 
"AMP PEAK  4(3Q26.31) WILD-TYPE"   "AMP PEAK  4(3Q26.31) MUTATED" 
                    TCGA-CG-4306                     TCGA-CG-4436 
"AMP PEAK  4(3Q26.31) WILD-TYPE"   "AMP PEAK  4(3Q26.31) MUTATED" 
                    TCGA-CG-4437                     TCGA-CG-4438 
  "AMP PEAK  4(3Q26.31) MUTATED" "AMP PEAK  4(3Q26.31) WILD-TYPE" 
                    TCGA-CG-4440                     TCGA-CG-4441 
"AMP PEAK  4(3Q26.31) WILD-TYPE" "AMP PEAK  4(3Q26.31) WILD-TYPE" 
                    TCGA-CG-4443                     TCGA-CG-4444 
"AMP PEAK  4(3Q26.31) WILD-TYPE"   "AMP PEAK  4(3Q26.31) MUTATED" 
                    TCGA-CG-4449                     TCGA-CG-4455 
"AMP PEAK  4(3Q26.31) WILD-TYPE"   "AMP PEAK  4(3Q26.31) MUTATED" 
                    TCGA-CG-4460                     TCGA-CG-4462 
"AMP PEAK  4(3Q26.31) WILD-TYPE"   "AMP PEAK  4(3Q26.31) MUTATED" 
                    TCGA-CG-4465                     TCGA-CG-4466 
"AMP PEAK  4(3Q26.31) WILD-TYPE" "AMP PEAK  4(3Q26.31) WILD-TYPE" 
                    TCGA-CG-4469                     TCGA-CG-4472 
"AMP PEAK  4(3Q26.31) WILD-TYPE"   "AMP PEAK  4(3Q26.31) MUTATED" 
                    TCGA-CG-4474                     TCGA-CG-4477 
"AMP PEAK  4(3Q26.31) WILD-TYPE" "AMP PEAK  4(3Q26.31) WILD-TYPE" 
                    TCGA-CG-5716                     TCGA-CG-5717 
"AMP PEAK  4(3Q26.31) WILD-TYPE" "AMP PEAK  4(3Q26.31) WILD-TYPE" 
                    TCGA-CG-5718                     TCGA-CG-5719 
"AMP PEAK  4(3Q26.31) WILD-TYPE"   "AMP PEAK  4(3Q26.31) MUTATED" 
                    TCGA-CG-5720                     TCGA-CG-5721 
"AMP PEAK  4(3Q26.31) WILD-TYPE" "AMP PEAK  4(3Q26.31) WILD-TYPE" 
                    TCGA-CG-5722                     TCGA-CG-5723 
"AMP PEAK  4(3Q26.31) WILD-TYPE" "AMP PEAK  4(3Q26.31) WILD-TYPE" 
                    TCGA-CG-5724                     TCGA-CG-5725 
  "AMP PEAK  4(3Q26.31) MUTATED"   "AMP PEAK  4(3Q26.31) MUTATED" 
                    TCGA-CG-5726                     TCGA-CG-5727 
"AMP PEAK  4(3Q26.31) WILD-TYPE" "AMP PEAK  4(3Q26.31) WILD-TYPE" 
                    TCGA-CG-5728                     TCGA-CG-5730 
"AMP PEAK  4(3Q26.31) WILD-TYPE" "AMP PEAK  4(3Q26.31) WILD-TYPE" 
                    TCGA-CG-5732                     TCGA-CG-5733 
"AMP PEAK  4(3Q26.31) WILD-TYPE" "AMP PEAK  4(3Q26.31) WILD-TYPE" 
                    TCGA-CG-5734                     TCGA-D7-5577 
"AMP PEAK  4(3Q26.31) WILD-TYPE" "AMP PEAK  4(3Q26.31) WILD-TYPE" 
                    TCGA-D7-5578                     TCGA-D7-5579 
"AMP PEAK  4(3Q26.31) WILD-TYPE" "AMP PEAK  4(3Q26.31) WILD-TYPE" 
                    TCGA-D7-6518                     TCGA-D7-6519 
"AMP PEAK  4(3Q26.31) WILD-TYPE" "AMP PEAK  4(3Q26.31) WILD-TYPE" 
                    TCGA-D7-6520                     TCGA-D7-6521 
"AMP PEAK  4(3Q26.31) WILD-TYPE"   "AMP PEAK  4(3Q26.31) MUTATED" 
                    TCGA-D7-6522                     TCGA-D7-6524 
"AMP PEAK  4(3Q26.31) WILD-TYPE" "AMP PEAK  4(3Q26.31) WILD-TYPE" 
                    TCGA-D7-6525                     TCGA-D7-6526 
"AMP PEAK  4(3Q26.31) WILD-TYPE" "AMP PEAK  4(3Q26.31) WILD-TYPE" 
                    TCGA-D7-6527                     TCGA-D7-6528 
  "AMP PEAK  4(3Q26.31) MUTATED" "AMP PEAK  4(3Q26.31) WILD-TYPE" 
                    TCGA-D7-6815                     TCGA-D7-6817 
  "AMP PEAK  4(3Q26.31) MUTATED" "AMP PEAK  4(3Q26.31) WILD-TYPE" 
                    TCGA-D7-6818                     TCGA-D7-6820 
"AMP PEAK  4(3Q26.31) WILD-TYPE" "AMP PEAK  4(3Q26.31) WILD-TYPE" 
                    TCGA-D7-6822                     TCGA-EQ-5647 
"AMP PEAK  4(3Q26.31) WILD-TYPE"   "AMP PEAK  4(3Q26.31) MUTATED" 
                    TCGA-EQ-8122                     TCGA-F1-6177 
"AMP PEAK  4(3Q26.31) WILD-TYPE" "AMP PEAK  4(3Q26.31) WILD-TYPE" 
                    TCGA-F1-6874                     TCGA-F1-6875 
"AMP PEAK  4(3Q26.31) WILD-TYPE" "AMP PEAK  4(3Q26.31) WILD-TYPE" 
                    TCGA-FP-7735                     TCGA-FP-7829 
  "AMP PEAK  4(3Q26.31) MUTATED"   "AMP PEAK  4(3Q26.31) MUTATED" 
                    TCGA-FP-7916                     TCGA-FP-7998 
  "AMP PEAK  4(3Q26.31) MUTATED"   "AMP PEAK  4(3Q26.31) MUTATED" 
                    TCGA-HJ-7597                     TCGA-IN-7806 
  "AMP PEAK  4(3Q26.31) MUTATED" "AMP PEAK  4(3Q26.31) WILD-TYPE" 
                    TCGA-IN-7808                     TCGA-IP-7968 
"AMP PEAK  4(3Q26.31) WILD-TYPE" "AMP PEAK  4(3Q26.31) WILD-TYPE" 
                    TCGA-B7-5816                     TCGA-B7-5818 
  "AMP PEAK  4(3Q26.31) MUTATED"   "AMP PEAK  4(3Q26.31) MUTATED" 
                    TCGA-BR-6452                     TCGA-BR-6455 
  "AMP PEAK  4(3Q26.31) MUTATED" "AMP PEAK  4(3Q26.31) WILD-TYPE" 
                    TCGA-BR-6457                     TCGA-BR-6458 
"AMP PEAK  4(3Q26.31) WILD-TYPE" "AMP PEAK  4(3Q26.31) WILD-TYPE" 
                    TCGA-BR-6563                     TCGA-BR-6564 
"AMP PEAK  4(3Q26.31) WILD-TYPE" "AMP PEAK  4(3Q26.31) WILD-TYPE" 
                    TCGA-BR-6565                     TCGA-BR-6566 
  "AMP PEAK  4(3Q26.31) MUTATED" "AMP PEAK  4(3Q26.31) WILD-TYPE" 
                    TCGA-BR-6705                     TCGA-BR-6706 
"AMP PEAK  4(3Q26.31) WILD-TYPE"   "AMP PEAK  4(3Q26.31) MUTATED" 
                    TCGA-BR-6707                     TCGA-BR-6709 
"AMP PEAK  4(3Q26.31) WILD-TYPE" "AMP PEAK  4(3Q26.31) WILD-TYPE" 
                    TCGA-BR-6710                     TCGA-BR-6801 
"AMP PEAK  4(3Q26.31) WILD-TYPE"   "AMP PEAK  4(3Q26.31) MUTATED" 
                    TCGA-BR-6802                     TCGA-BR-6803 
  "AMP PEAK  4(3Q26.31) MUTATED" "AMP PEAK  4(3Q26.31) WILD-TYPE" 
                    TCGA-BR-6852                     TCGA-BR-7196 
"AMP PEAK  4(3Q26.31) WILD-TYPE"   "AMP PEAK  4(3Q26.31) MUTATED" 
                    TCGA-BR-7197                     TCGA-BR-7703 
"AMP PEAK  4(3Q26.31) WILD-TYPE" "AMP PEAK  4(3Q26.31) WILD-TYPE" 
                    TCGA-BR-7704                     TCGA-BR-7707 
"AMP PEAK  4(3Q26.31) WILD-TYPE" "AMP PEAK  4(3Q26.31) WILD-TYPE" 
                    TCGA-BR-7715                     TCGA-BR-7716 
"AMP PEAK  4(3Q26.31) WILD-TYPE" "AMP PEAK  4(3Q26.31) WILD-TYPE" 
                    TCGA-BR-7717                     TCGA-BR-7722 
"AMP PEAK  4(3Q26.31) WILD-TYPE"   "AMP PEAK  4(3Q26.31) MUTATED" 
                    TCGA-BR-7723                     TCGA-BR-7851 
  "AMP PEAK  4(3Q26.31) MUTATED" "AMP PEAK  4(3Q26.31) WILD-TYPE" 
                    TCGA-BR-7901                     TCGA-BR-7957 
  "AMP PEAK  4(3Q26.31) MUTATED" "AMP PEAK  4(3Q26.31) WILD-TYPE" 
                    TCGA-BR-7958                     TCGA-BR-7959 
"AMP PEAK  4(3Q26.31) WILD-TYPE" "AMP PEAK  4(3Q26.31) WILD-TYPE" 
                    TCGA-BR-8059                     TCGA-BR-8060 
"AMP PEAK  4(3Q26.31) WILD-TYPE" "AMP PEAK  4(3Q26.31) WILD-TYPE" 
                    TCGA-BR-8077                     TCGA-BR-8078 
"AMP PEAK  4(3Q26.31) WILD-TYPE" "AMP PEAK  4(3Q26.31) WILD-TYPE" 
                    TCGA-BR-8080                     TCGA-BR-8081 
"AMP PEAK  4(3Q26.31) WILD-TYPE" "AMP PEAK  4(3Q26.31) WILD-TYPE" 
                    TCGA-BR-8284                     TCGA-BR-8285 
"AMP PEAK  4(3Q26.31) WILD-TYPE" "AMP PEAK  4(3Q26.31) WILD-TYPE" 
                    TCGA-BR-8286                     TCGA-BR-8289 
"AMP PEAK  4(3Q26.31) WILD-TYPE" "AMP PEAK  4(3Q26.31) WILD-TYPE" 
                    TCGA-BR-8291                     TCGA-BR-8295 
"AMP PEAK  4(3Q26.31) WILD-TYPE" "AMP PEAK  4(3Q26.31) WILD-TYPE" 
                    TCGA-BR-8296                     TCGA-BR-8297 
"AMP PEAK  4(3Q26.31) WILD-TYPE" "AMP PEAK  4(3Q26.31) WILD-TYPE" 
                    TCGA-CD-5798                     TCGA-CD-5799 
"AMP PEAK  4(3Q26.31) WILD-TYPE"   "AMP PEAK  4(3Q26.31) MUTATED" 
                    TCGA-CD-5800                     TCGA-CD-5801 
"AMP PEAK  4(3Q26.31) WILD-TYPE"   "AMP PEAK  4(3Q26.31) MUTATED" 
                    TCGA-CD-5802                     TCGA-CD-5803 
"AMP PEAK  4(3Q26.31) WILD-TYPE" "AMP PEAK  4(3Q26.31) WILD-TYPE" 
                    TCGA-CG-4300                     TCGA-CG-4301 
"AMP PEAK  4(3Q26.31) WILD-TYPE"   "AMP PEAK  4(3Q26.31) MUTATED" 
                    TCGA-CG-4304                     TCGA-CG-4305 
"AMP PEAK  4(3Q26.31) WILD-TYPE"   "AMP PEAK  4(3Q26.31) MUTATED" 
                    TCGA-CG-4306                     TCGA-CG-4436 
"AMP PEAK  4(3Q26.31) WILD-TYPE"   "AMP PEAK  4(3Q26.31) MUTATED" 
                    TCGA-CG-4437                     TCGA-CG-4438 
  "AMP PEAK  4(3Q26.31) MUTATED" "AMP PEAK  4(3Q26.31) WILD-TYPE" 
                    TCGA-CG-4440                     TCGA-CG-4441 
"AMP PEAK  4(3Q26.31) WILD-TYPE" "AMP PEAK  4(3Q26.31) WILD-TYPE" 
                    TCGA-CG-4443                     TCGA-CG-4444 
"AMP PEAK  4(3Q26.31) WILD-TYPE"   "AMP PEAK  4(3Q26.31) MUTATED" 
                    TCGA-CG-4449                     TCGA-CG-4455 
"AMP PEAK  4(3Q26.31) WILD-TYPE"   "AMP PEAK  4(3Q26.31) MUTATED" 
                    TCGA-CG-4460                     TCGA-CG-4462 
"AMP PEAK  4(3Q26.31) WILD-TYPE"   "AMP PEAK  4(3Q26.31) MUTATED" 
                    TCGA-CG-4465                     TCGA-CG-4466 
"AMP PEAK  4(3Q26.31) WILD-TYPE" "AMP PEAK  4(3Q26.31) WILD-TYPE" 
                    TCGA-CG-4469                     TCGA-CG-4472 
"AMP PEAK  4(3Q26.31) WILD-TYPE"   "AMP PEAK  4(3Q26.31) MUTATED" 
                    TCGA-CG-4474                     TCGA-CG-4477 
"AMP PEAK  4(3Q26.31) WILD-TYPE" "AMP PEAK  4(3Q26.31) WILD-TYPE" 
                    TCGA-CG-5716                     TCGA-CG-5717 
"AMP PEAK  4(3Q26.31) WILD-TYPE" "AMP PEAK  4(3Q26.31) WILD-TYPE" 
                    TCGA-CG-5718                     TCGA-CG-5719 
"AMP PEAK  4(3Q26.31) WILD-TYPE"   "AMP PEAK  4(3Q26.31) MUTATED" 
                    TCGA-CG-5720                     TCGA-CG-5721 
"AMP PEAK  4(3Q26.31) WILD-TYPE" "AMP PEAK  4(3Q26.31) WILD-TYPE" 
                    TCGA-CG-5722                     TCGA-CG-5723 
"AMP PEAK  4(3Q26.31) WILD-TYPE" "AMP PEAK  4(3Q26.31) WILD-TYPE" 
                    TCGA-CG-5724                     TCGA-CG-5725 
  "AMP PEAK  4(3Q26.31) MUTATED"   "AMP PEAK  4(3Q26.31) MUTATED" 
                    TCGA-CG-5726                     TCGA-CG-5727 
"AMP PEAK  4(3Q26.31) WILD-TYPE" "AMP PEAK  4(3Q26.31) WILD-TYPE" 
                    TCGA-CG-5728                     TCGA-CG-5730 
"AMP PEAK  4(3Q26.31) WILD-TYPE" "AMP PEAK  4(3Q26.31) WILD-TYPE" 
                    TCGA-CG-5732                     TCGA-CG-5733 
"AMP PEAK  4(3Q26.31) WILD-TYPE" "AMP PEAK  4(3Q26.31) WILD-TYPE" 
                    TCGA-CG-5734                     TCGA-D7-5577 
"AMP PEAK  4(3Q26.31) WILD-TYPE" "AMP PEAK  4(3Q26.31) WILD-TYPE" 
                    TCGA-D7-5578                     TCGA-D7-5579 
"AMP PEAK  4(3Q26.31) WILD-TYPE" "AMP PEAK  4(3Q26.31) WILD-TYPE" 
                    TCGA-D7-6518                     TCGA-D7-6519 
"AMP PEAK  4(3Q26.31) WILD-TYPE" "AMP PEAK  4(3Q26.31) WILD-TYPE" 
                    TCGA-D7-6520                     TCGA-D7-6521 
"AMP PEAK  4(3Q26.31) WILD-TYPE"   "AMP PEAK  4(3Q26.31) MUTATED" 
                    TCGA-D7-6522                     TCGA-D7-6524 
"AMP PEAK  4(3Q26.31) WILD-TYPE" "AMP PEAK  4(3Q26.31) WILD-TYPE" 
                    TCGA-D7-6525                     TCGA-D7-6526 
"AMP PEAK  4(3Q26.31) WILD-TYPE" "AMP PEAK  4(3Q26.31) WILD-TYPE" 
                    TCGA-D7-6527                     TCGA-D7-6528 
  "AMP PEAK  4(3Q26.31) MUTATED" "AMP PEAK  4(3Q26.31) WILD-TYPE" 
                    TCGA-D7-6815                     TCGA-D7-6817 
  "AMP PEAK  4(3Q26.31) MUTATED" "AMP PEAK  4(3Q26.31) WILD-TYPE" 
                    TCGA-D7-6818                     TCGA-D7-6820 
"AMP PEAK  4(3Q26.31) WILD-TYPE" "AMP PEAK  4(3Q26.31) WILD-TYPE" 
                    TCGA-D7-6822                     TCGA-EQ-5647 
"AMP PEAK  4(3Q26.31) WILD-TYPE"   "AMP PEAK  4(3Q26.31) MUTATED" 
                    TCGA-EQ-8122                     TCGA-F1-6177 
"AMP PEAK  4(3Q26.31) WILD-TYPE" "AMP PEAK  4(3Q26.31) WILD-TYPE" 
                    TCGA-F1-6874                     TCGA-F1-6875 
"AMP PEAK  4(3Q26.31) WILD-TYPE" "AMP PEAK  4(3Q26.31) WILD-TYPE" 
                    TCGA-FP-7735                     TCGA-FP-7829 
  "AMP PEAK  4(3Q26.31) MUTATED"   "AMP PEAK  4(3Q26.31) MUTATED" 
                    TCGA-FP-7916                     TCGA-FP-7998 
  "AMP PEAK  4(3Q26.31) MUTATED"   "AMP PEAK  4(3Q26.31) MUTATED" 
                    TCGA-HJ-7597                     TCGA-IN-7806 
  "AMP PEAK  4(3Q26.31) MUTATED" "AMP PEAK  4(3Q26.31) WILD-TYPE" 
                    TCGA-IN-7808                     TCGA-IP-7968 
"AMP PEAK  4(3Q26.31) WILD-TYPE" "AMP PEAK  4(3Q26.31) WILD-TYPE" 
[1] "hr=" "1"  
D4V2, continuous
D4V3, binary
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  AMP PEAK  4(3Q26.31) MUTATED     13   35
  AMP PEAK  4(3Q26.31) WILD-TYPE   52   61
        clus
vv       AMP PEAK  4(3Q26.31) MUTATED AMP PEAK  4(3Q26.31) WILD-TYPE
  FEMALE                           13                             52
  MALE                             35                             61
D4V4, multiclass
D4V5, multiclass
    clus
vv   AMP PEAK  4(3Q26.31) MUTATED AMP PEAK  4(3Q26.31) WILD-TYPE
  T1                            0                              6
  T2                           14                             39
  T3                           20                             39
  T4                           10                             23
D4V6, multiclass
    clus
vv   AMP PEAK  4(3Q26.31) MUTATED AMP PEAK  4(3Q26.31) WILD-TYPE
  N0                           12                             38
  N1                           21                             36
  N2                            6                             18
  N3                            6                             13
D4V7, multiclass
    clus
vv   AMP PEAK  4(3Q26.31) MUTATED AMP PEAK  4(3Q26.31) WILD-TYPE
  M0                           37                             95
  M1                            6                             12
  MX                            5                              6
D4V8, multiclass
     clus
vv    AMP PEAK  4(3Q26.31) MUTATED AMP PEAK  4(3Q26.31) WILD-TYPE
  I                              6                             19
  II                            11                             32
  III                           18                             30
  IV                             8                             21
D4V9, binary
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  AMP PEAK  4(3Q26.31) MUTATED     47    1
  AMP PEAK  4(3Q26.31) WILD-TYPE  109    4
     clus
vv    AMP PEAK  4(3Q26.31) MUTATED AMP PEAK  4(3Q26.31) WILD-TYPE
  NO                             1                              4
  YES                           47                            109

Clustering(5) Variable = Amp Peak  5(5p13.1) mutation analysis
D5V1, survival
                   TCGA-B7-5816                    TCGA-B7-5818 
"AMP PEAK  5(5P13.1) WILD-TYPE" "AMP PEAK  5(5P13.1) WILD-TYPE" 
                   TCGA-BR-6452                    TCGA-BR-6455 
"AMP PEAK  5(5P13.1) WILD-TYPE" "AMP PEAK  5(5P13.1) WILD-TYPE" 
                   TCGA-BR-6457                    TCGA-BR-6458 
"AMP PEAK  5(5P13.1) WILD-TYPE"   "AMP PEAK  5(5P13.1) MUTATED" 
                   TCGA-BR-6563                    TCGA-BR-6564 
"AMP PEAK  5(5P13.1) WILD-TYPE" "AMP PEAK  5(5P13.1) WILD-TYPE" 
                   TCGA-BR-6565                    TCGA-BR-6566 
"AMP PEAK  5(5P13.1) WILD-TYPE" "AMP PEAK  5(5P13.1) WILD-TYPE" 
                   TCGA-BR-6705                    TCGA-BR-6706 
"AMP PEAK  5(5P13.1) WILD-TYPE" "AMP PEAK  5(5P13.1) WILD-TYPE" 
                   TCGA-BR-6707                    TCGA-BR-6709 
"AMP PEAK  5(5P13.1) WILD-TYPE" "AMP PEAK  5(5P13.1) WILD-TYPE" 
                   TCGA-BR-6710                    TCGA-BR-6801 
"AMP PEAK  5(5P13.1) WILD-TYPE" "AMP PEAK  5(5P13.1) WILD-TYPE" 
                   TCGA-BR-6802                    TCGA-BR-6803 
"AMP PEAK  5(5P13.1) WILD-TYPE" "AMP PEAK  5(5P13.1) WILD-TYPE" 
                   TCGA-BR-6852                    TCGA-BR-7196 
"AMP PEAK  5(5P13.1) WILD-TYPE" "AMP PEAK  5(5P13.1) WILD-TYPE" 
                   TCGA-BR-7197                    TCGA-BR-7703 
  "AMP PEAK  5(5P13.1) MUTATED" "AMP PEAK  5(5P13.1) WILD-TYPE" 
                   TCGA-BR-7704                    TCGA-BR-7707 
  "AMP PEAK  5(5P13.1) MUTATED" "AMP PEAK  5(5P13.1) WILD-TYPE" 
                   TCGA-BR-7715                    TCGA-BR-7716 
  "AMP PEAK  5(5P13.1) MUTATED"   "AMP PEAK  5(5P13.1) MUTATED" 
                   TCGA-BR-7717                    TCGA-BR-7722 
  "AMP PEAK  5(5P13.1) MUTATED" "AMP PEAK  5(5P13.1) WILD-TYPE" 
                   TCGA-BR-7723                    TCGA-BR-7851 
"AMP PEAK  5(5P13.1) WILD-TYPE" "AMP PEAK  5(5P13.1) WILD-TYPE" 
                   TCGA-BR-7901                    TCGA-BR-7957 
  "AMP PEAK  5(5P13.1) MUTATED" "AMP PEAK  5(5P13.1) WILD-TYPE" 
                   TCGA-BR-7958                    TCGA-BR-7959 
"AMP PEAK  5(5P13.1) WILD-TYPE" "AMP PEAK  5(5P13.1) WILD-TYPE" 
                   TCGA-BR-8059                    TCGA-BR-8060 
"AMP PEAK  5(5P13.1) WILD-TYPE" "AMP PEAK  5(5P13.1) WILD-TYPE" 
                   TCGA-BR-8077                    TCGA-BR-8078 
"AMP PEAK  5(5P13.1) WILD-TYPE" "AMP PEAK  5(5P13.1) WILD-TYPE" 
                   TCGA-BR-8080                    TCGA-BR-8081 
"AMP PEAK  5(5P13.1) WILD-TYPE" "AMP PEAK  5(5P13.1) WILD-TYPE" 
                   TCGA-BR-8284                    TCGA-BR-8285 
"AMP PEAK  5(5P13.1) WILD-TYPE" "AMP PEAK  5(5P13.1) WILD-TYPE" 
                   TCGA-BR-8286                    TCGA-BR-8289 
"AMP PEAK  5(5P13.1) WILD-TYPE" "AMP PEAK  5(5P13.1) WILD-TYPE" 
                   TCGA-BR-8291                    TCGA-BR-8295 
"AMP PEAK  5(5P13.1) WILD-TYPE" "AMP PEAK  5(5P13.1) WILD-TYPE" 
                   TCGA-BR-8296                    TCGA-BR-8297 
"AMP PEAK  5(5P13.1) WILD-TYPE" "AMP PEAK  5(5P13.1) WILD-TYPE" 
                   TCGA-CD-5798                    TCGA-CD-5799 
"AMP PEAK  5(5P13.1) WILD-TYPE" "AMP PEAK  5(5P13.1) WILD-TYPE" 
                   TCGA-CD-5800                    TCGA-CD-5801 
"AMP PEAK  5(5P13.1) WILD-TYPE"   "AMP PEAK  5(5P13.1) MUTATED" 
                   TCGA-CD-5802                    TCGA-CD-5803 
"AMP PEAK  5(5P13.1) WILD-TYPE" "AMP PEAK  5(5P13.1) WILD-TYPE" 
                   TCGA-CG-4300                    TCGA-CG-4301 
"AMP PEAK  5(5P13.1) WILD-TYPE" "AMP PEAK  5(5P13.1) WILD-TYPE" 
                   TCGA-CG-4304                    TCGA-CG-4305 
"AMP PEAK  5(5P13.1) WILD-TYPE" "AMP PEAK  5(5P13.1) WILD-TYPE" 
                   TCGA-CG-4306                    TCGA-CG-4436 
"AMP PEAK  5(5P13.1) WILD-TYPE"   "AMP PEAK  5(5P13.1) MUTATED" 
                   TCGA-CG-4437                    TCGA-CG-4438 
"AMP PEAK  5(5P13.1) WILD-TYPE"   "AMP PEAK  5(5P13.1) MUTATED" 
                   TCGA-CG-4440                    TCGA-CG-4441 
"AMP PEAK  5(5P13.1) WILD-TYPE" "AMP PEAK  5(5P13.1) WILD-TYPE" 
                   TCGA-CG-4443                    TCGA-CG-4444 
"AMP PEAK  5(5P13.1) WILD-TYPE"   "AMP PEAK  5(5P13.1) MUTATED" 
                   TCGA-CG-4449                    TCGA-CG-4455 
"AMP PEAK  5(5P13.1) WILD-TYPE"   "AMP PEAK  5(5P13.1) MUTATED" 
                   TCGA-CG-4460                    TCGA-CG-4462 
  "AMP PEAK  5(5P13.1) MUTATED" "AMP PEAK  5(5P13.1) WILD-TYPE" 
                   TCGA-CG-4465                    TCGA-CG-4466 
"AMP PEAK  5(5P13.1) WILD-TYPE"   "AMP PEAK  5(5P13.1) MUTATED" 
                   TCGA-CG-4469                    TCGA-CG-4472 
  "AMP PEAK  5(5P13.1) MUTATED"   "AMP PEAK  5(5P13.1) MUTATED" 
                   TCGA-CG-4474                    TCGA-CG-4477 
"AMP PEAK  5(5P13.1) WILD-TYPE" "AMP PEAK  5(5P13.1) WILD-TYPE" 
                   TCGA-CG-5716                    TCGA-CG-5717 
"AMP PEAK  5(5P13.1) WILD-TYPE" "AMP PEAK  5(5P13.1) WILD-TYPE" 
                   TCGA-CG-5718                    TCGA-CG-5719 
  "AMP PEAK  5(5P13.1) MUTATED" "AMP PEAK  5(5P13.1) WILD-TYPE" 
                   TCGA-CG-5720                    TCGA-CG-5721 
"AMP PEAK  5(5P13.1) WILD-TYPE" "AMP PEAK  5(5P13.1) WILD-TYPE" 
                   TCGA-CG-5722                    TCGA-CG-5723 
  "AMP PEAK  5(5P13.1) MUTATED" "AMP PEAK  5(5P13.1) WILD-TYPE" 
                   TCGA-CG-5724                    TCGA-CG-5725 
  "AMP PEAK  5(5P13.1) MUTATED"   "AMP PEAK  5(5P13.1) MUTATED" 
                   TCGA-CG-5726                    TCGA-CG-5727 
"AMP PEAK  5(5P13.1) WILD-TYPE" "AMP PEAK  5(5P13.1) WILD-TYPE" 
                   TCGA-CG-5728                    TCGA-CG-5730 
"AMP PEAK  5(5P13.1) WILD-TYPE"   "AMP PEAK  5(5P13.1) MUTATED" 
                   TCGA-CG-5732                    TCGA-CG-5733 
"AMP PEAK  5(5P13.1) WILD-TYPE" "AMP PEAK  5(5P13.1) WILD-TYPE" 
                   TCGA-CG-5734                    TCGA-D7-5577 
"AMP PEAK  5(5P13.1) WILD-TYPE" "AMP PEAK  5(5P13.1) WILD-TYPE" 
                   TCGA-D7-5578                    TCGA-D7-5579 
  "AMP PEAK  5(5P13.1) MUTATED"   "AMP PEAK  5(5P13.1) MUTATED" 
                   TCGA-D7-6518                    TCGA-D7-6519 
  "AMP PEAK  5(5P13.1) MUTATED" "AMP PEAK  5(5P13.1) WILD-TYPE" 
                   TCGA-D7-6520                    TCGA-D7-6521 
"AMP PEAK  5(5P13.1) WILD-TYPE" "AMP PEAK  5(5P13.1) WILD-TYPE" 
                   TCGA-D7-6522                    TCGA-D7-6524 
"AMP PEAK  5(5P13.1) WILD-TYPE" "AMP PEAK  5(5P13.1) WILD-TYPE" 
                   TCGA-D7-6525                    TCGA-D7-6526 
"AMP PEAK  5(5P13.1) WILD-TYPE" "AMP PEAK  5(5P13.1) WILD-TYPE" 
                   TCGA-D7-6527                    TCGA-D7-6528 
  "AMP PEAK  5(5P13.1) MUTATED"   "AMP PEAK  5(5P13.1) MUTATED" 
                   TCGA-D7-6815                    TCGA-D7-6817 
"AMP PEAK  5(5P13.1) WILD-TYPE" "AMP PEAK  5(5P13.1) WILD-TYPE" 
                   TCGA-D7-6818                    TCGA-D7-6820 
  "AMP PEAK  5(5P13.1) MUTATED"   "AMP PEAK  5(5P13.1) MUTATED" 
                   TCGA-D7-6822                    TCGA-EQ-5647 
"AMP PEAK  5(5P13.1) WILD-TYPE"   "AMP PEAK  5(5P13.1) MUTATED" 
                   TCGA-EQ-8122                    TCGA-F1-6177 
"AMP PEAK  5(5P13.1) WILD-TYPE" "AMP PEAK  5(5P13.1) WILD-TYPE" 
                   TCGA-F1-6874                    TCGA-F1-6875 
"AMP PEAK  5(5P13.1) WILD-TYPE"   "AMP PEAK  5(5P13.1) MUTATED" 
                   TCGA-FP-7735                    TCGA-FP-7829 
  "AMP PEAK  5(5P13.1) MUTATED"   "AMP PEAK  5(5P13.1) MUTATED" 
                   TCGA-FP-7916                    TCGA-FP-7998 
"AMP PEAK  5(5P13.1) WILD-TYPE" "AMP PEAK  5(5P13.1) WILD-TYPE" 
                   TCGA-HJ-7597                    TCGA-IN-7806 
"AMP PEAK  5(5P13.1) WILD-TYPE" "AMP PEAK  5(5P13.1) WILD-TYPE" 
                   TCGA-IN-7808                    TCGA-IP-7968 
  "AMP PEAK  5(5P13.1) MUTATED" "AMP PEAK  5(5P13.1) WILD-TYPE" 
                   TCGA-B7-5816                    TCGA-B7-5818 
"AMP PEAK  5(5P13.1) WILD-TYPE" "AMP PEAK  5(5P13.1) WILD-TYPE" 
                   TCGA-BR-6452                    TCGA-BR-6455 
"AMP PEAK  5(5P13.1) WILD-TYPE" "AMP PEAK  5(5P13.1) WILD-TYPE" 
                   TCGA-BR-6457                    TCGA-BR-6458 
"AMP PEAK  5(5P13.1) WILD-TYPE"   "AMP PEAK  5(5P13.1) MUTATED" 
                   TCGA-BR-6563                    TCGA-BR-6564 
"AMP PEAK  5(5P13.1) WILD-TYPE" "AMP PEAK  5(5P13.1) WILD-TYPE" 
                   TCGA-BR-6565                    TCGA-BR-6566 
"AMP PEAK  5(5P13.1) WILD-TYPE" "AMP PEAK  5(5P13.1) WILD-TYPE" 
                   TCGA-BR-6705                    TCGA-BR-6706 
"AMP PEAK  5(5P13.1) WILD-TYPE" "AMP PEAK  5(5P13.1) WILD-TYPE" 
                   TCGA-BR-6707                    TCGA-BR-6709 
"AMP PEAK  5(5P13.1) WILD-TYPE" "AMP PEAK  5(5P13.1) WILD-TYPE" 
                   TCGA-BR-6710                    TCGA-BR-6801 
"AMP PEAK  5(5P13.1) WILD-TYPE" "AMP PEAK  5(5P13.1) WILD-TYPE" 
                   TCGA-BR-6802                    TCGA-BR-6803 
"AMP PEAK  5(5P13.1) WILD-TYPE" "AMP PEAK  5(5P13.1) WILD-TYPE" 
                   TCGA-BR-6852                    TCGA-BR-7196 
"AMP PEAK  5(5P13.1) WILD-TYPE" "AMP PEAK  5(5P13.1) WILD-TYPE" 
                   TCGA-BR-7197                    TCGA-BR-7703 
  "AMP PEAK  5(5P13.1) MUTATED" "AMP PEAK  5(5P13.1) WILD-TYPE" 
                   TCGA-BR-7704                    TCGA-BR-7707 
  "AMP PEAK  5(5P13.1) MUTATED" "AMP PEAK  5(5P13.1) WILD-TYPE" 
                   TCGA-BR-7715                    TCGA-BR-7716 
  "AMP PEAK  5(5P13.1) MUTATED"   "AMP PEAK  5(5P13.1) MUTATED" 
                   TCGA-BR-7717                    TCGA-BR-7722 
  "AMP PEAK  5(5P13.1) MUTATED" "AMP PEAK  5(5P13.1) WILD-TYPE" 
                   TCGA-BR-7723                    TCGA-BR-7851 
"AMP PEAK  5(5P13.1) WILD-TYPE" "AMP PEAK  5(5P13.1) WILD-TYPE" 
                   TCGA-BR-7901                    TCGA-BR-7957 
  "AMP PEAK  5(5P13.1) MUTATED" "AMP PEAK  5(5P13.1) WILD-TYPE" 
                   TCGA-BR-7958                    TCGA-BR-7959 
"AMP PEAK  5(5P13.1) WILD-TYPE" "AMP PEAK  5(5P13.1) WILD-TYPE" 
                   TCGA-BR-8059                    TCGA-BR-8060 
"AMP PEAK  5(5P13.1) WILD-TYPE" "AMP PEAK  5(5P13.1) WILD-TYPE" 
                   TCGA-BR-8077                    TCGA-BR-8078 
"AMP PEAK  5(5P13.1) WILD-TYPE" "AMP PEAK  5(5P13.1) WILD-TYPE" 
                   TCGA-BR-8080                    TCGA-BR-8081 
"AMP PEAK  5(5P13.1) WILD-TYPE" "AMP PEAK  5(5P13.1) WILD-TYPE" 
                   TCGA-BR-8284                    TCGA-BR-8285 
"AMP PEAK  5(5P13.1) WILD-TYPE" "AMP PEAK  5(5P13.1) WILD-TYPE" 
                   TCGA-BR-8286                    TCGA-BR-8289 
"AMP PEAK  5(5P13.1) WILD-TYPE" "AMP PEAK  5(5P13.1) WILD-TYPE" 
                   TCGA-BR-8291                    TCGA-BR-8295 
"AMP PEAK  5(5P13.1) WILD-TYPE" "AMP PEAK  5(5P13.1) WILD-TYPE" 
                   TCGA-BR-8296                    TCGA-BR-8297 
"AMP PEAK  5(5P13.1) WILD-TYPE" "AMP PEAK  5(5P13.1) WILD-TYPE" 
                   TCGA-CD-5798                    TCGA-CD-5799 
"AMP PEAK  5(5P13.1) WILD-TYPE" "AMP PEAK  5(5P13.1) WILD-TYPE" 
                   TCGA-CD-5800                    TCGA-CD-5801 
"AMP PEAK  5(5P13.1) WILD-TYPE"   "AMP PEAK  5(5P13.1) MUTATED" 
                   TCGA-CD-5802                    TCGA-CD-5803 
"AMP PEAK  5(5P13.1) WILD-TYPE" "AMP PEAK  5(5P13.1) WILD-TYPE" 
                   TCGA-CG-4300                    TCGA-CG-4301 
"AMP PEAK  5(5P13.1) WILD-TYPE" "AMP PEAK  5(5P13.1) WILD-TYPE" 
                   TCGA-CG-4304                    TCGA-CG-4305 
"AMP PEAK  5(5P13.1) WILD-TYPE" "AMP PEAK  5(5P13.1) WILD-TYPE" 
                   TCGA-CG-4306                    TCGA-CG-4436 
"AMP PEAK  5(5P13.1) WILD-TYPE"   "AMP PEAK  5(5P13.1) MUTATED" 
                   TCGA-CG-4437                    TCGA-CG-4438 
"AMP PEAK  5(5P13.1) WILD-TYPE"   "AMP PEAK  5(5P13.1) MUTATED" 
                   TCGA-CG-4440                    TCGA-CG-4441 
"AMP PEAK  5(5P13.1) WILD-TYPE" "AMP PEAK  5(5P13.1) WILD-TYPE" 
                   TCGA-CG-4443                    TCGA-CG-4444 
"AMP PEAK  5(5P13.1) WILD-TYPE"   "AMP PEAK  5(5P13.1) MUTATED" 
                   TCGA-CG-4449                    TCGA-CG-4455 
"AMP PEAK  5(5P13.1) WILD-TYPE"   "AMP PEAK  5(5P13.1) MUTATED" 
                   TCGA-CG-4460                    TCGA-CG-4462 
  "AMP PEAK  5(5P13.1) MUTATED" "AMP PEAK  5(5P13.1) WILD-TYPE" 
                   TCGA-CG-4465                    TCGA-CG-4466 
"AMP PEAK  5(5P13.1) WILD-TYPE"   "AMP PEAK  5(5P13.1) MUTATED" 
                   TCGA-CG-4469                    TCGA-CG-4472 
  "AMP PEAK  5(5P13.1) MUTATED"   "AMP PEAK  5(5P13.1) MUTATED" 
                   TCGA-CG-4474                    TCGA-CG-4477 
"AMP PEAK  5(5P13.1) WILD-TYPE" "AMP PEAK  5(5P13.1) WILD-TYPE" 
                   TCGA-CG-5716                    TCGA-CG-5717 
"AMP PEAK  5(5P13.1) WILD-TYPE" "AMP PEAK  5(5P13.1) WILD-TYPE" 
                   TCGA-CG-5718                    TCGA-CG-5719 
  "AMP PEAK  5(5P13.1) MUTATED" "AMP PEAK  5(5P13.1) WILD-TYPE" 
                   TCGA-CG-5720                    TCGA-CG-5721 
"AMP PEAK  5(5P13.1) WILD-TYPE" "AMP PEAK  5(5P13.1) WILD-TYPE" 
                   TCGA-CG-5722                    TCGA-CG-5723 
  "AMP PEAK  5(5P13.1) MUTATED" "AMP PEAK  5(5P13.1) WILD-TYPE" 
                   TCGA-CG-5724                    TCGA-CG-5725 
  "AMP PEAK  5(5P13.1) MUTATED"   "AMP PEAK  5(5P13.1) MUTATED" 
                   TCGA-CG-5726                    TCGA-CG-5727 
"AMP PEAK  5(5P13.1) WILD-TYPE" "AMP PEAK  5(5P13.1) WILD-TYPE" 
                   TCGA-CG-5728                    TCGA-CG-5730 
"AMP PEAK  5(5P13.1) WILD-TYPE"   "AMP PEAK  5(5P13.1) MUTATED" 
                   TCGA-CG-5732                    TCGA-CG-5733 
"AMP PEAK  5(5P13.1) WILD-TYPE" "AMP PEAK  5(5P13.1) WILD-TYPE" 
                   TCGA-CG-5734                    TCGA-D7-5577 
"AMP PEAK  5(5P13.1) WILD-TYPE" "AMP PEAK  5(5P13.1) WILD-TYPE" 
                   TCGA-D7-5578                    TCGA-D7-5579 
  "AMP PEAK  5(5P13.1) MUTATED"   "AMP PEAK  5(5P13.1) MUTATED" 
                   TCGA-D7-6518                    TCGA-D7-6519 
  "AMP PEAK  5(5P13.1) MUTATED" "AMP PEAK  5(5P13.1) WILD-TYPE" 
                   TCGA-D7-6520                    TCGA-D7-6521 
"AMP PEAK  5(5P13.1) WILD-TYPE" "AMP PEAK  5(5P13.1) WILD-TYPE" 
                   TCGA-D7-6522                    TCGA-D7-6524 
"AMP PEAK  5(5P13.1) WILD-TYPE" "AMP PEAK  5(5P13.1) WILD-TYPE" 
                   TCGA-D7-6525                    TCGA-D7-6526 
"AMP PEAK  5(5P13.1) WILD-TYPE" "AMP PEAK  5(5P13.1) WILD-TYPE" 
                   TCGA-D7-6527                    TCGA-D7-6528 
  "AMP PEAK  5(5P13.1) MUTATED"   "AMP PEAK  5(5P13.1) MUTATED" 
                   TCGA-D7-6815                    TCGA-D7-6817 
"AMP PEAK  5(5P13.1) WILD-TYPE" "AMP PEAK  5(5P13.1) WILD-TYPE" 
                   TCGA-D7-6818                    TCGA-D7-6820 
  "AMP PEAK  5(5P13.1) MUTATED"   "AMP PEAK  5(5P13.1) MUTATED" 
                   TCGA-D7-6822                    TCGA-EQ-5647 
"AMP PEAK  5(5P13.1) WILD-TYPE"   "AMP PEAK  5(5P13.1) MUTATED" 
                   TCGA-EQ-8122                    TCGA-F1-6177 
"AMP PEAK  5(5P13.1) WILD-TYPE" "AMP PEAK  5(5P13.1) WILD-TYPE" 
                   TCGA-F1-6874                    TCGA-F1-6875 
"AMP PEAK  5(5P13.1) WILD-TYPE"   "AMP PEAK  5(5P13.1) MUTATED" 
                   TCGA-FP-7735                    TCGA-FP-7829 
  "AMP PEAK  5(5P13.1) MUTATED"   "AMP PEAK  5(5P13.1) MUTATED" 
                   TCGA-FP-7916                    TCGA-FP-7998 
"AMP PEAK  5(5P13.1) WILD-TYPE" "AMP PEAK  5(5P13.1) WILD-TYPE" 
                   TCGA-HJ-7597                    TCGA-IN-7806 
"AMP PEAK  5(5P13.1) WILD-TYPE" "AMP PEAK  5(5P13.1) WILD-TYPE" 
                   TCGA-IN-7808                    TCGA-IP-7968 
  "AMP PEAK  5(5P13.1) MUTATED" "AMP PEAK  5(5P13.1) WILD-TYPE" 
                   TCGA-B7-5816                    TCGA-B7-5818 
"AMP PEAK  5(5P13.1) WILD-TYPE" "AMP PEAK  5(5P13.1) WILD-TYPE" 
                   TCGA-BR-6452                    TCGA-BR-6455 
"AMP PEAK  5(5P13.1) WILD-TYPE" "AMP PEAK  5(5P13.1) WILD-TYPE" 
                   TCGA-BR-6457                    TCGA-BR-6458 
"AMP PEAK  5(5P13.1) WILD-TYPE"   "AMP PEAK  5(5P13.1) MUTATED" 
                   TCGA-BR-6563                    TCGA-BR-6564 
"AMP PEAK  5(5P13.1) WILD-TYPE" "AMP PEAK  5(5P13.1) WILD-TYPE" 
                   TCGA-BR-6565                    TCGA-BR-6566 
"AMP PEAK  5(5P13.1) WILD-TYPE" "AMP PEAK  5(5P13.1) WILD-TYPE" 
                   TCGA-BR-6705                    TCGA-BR-6706 
"AMP PEAK  5(5P13.1) WILD-TYPE" "AMP PEAK  5(5P13.1) WILD-TYPE" 
                   TCGA-BR-6707                    TCGA-BR-6709 
"AMP PEAK  5(5P13.1) WILD-TYPE" "AMP PEAK  5(5P13.1) WILD-TYPE" 
                   TCGA-BR-6710                    TCGA-BR-6801 
"AMP PEAK  5(5P13.1) WILD-TYPE" "AMP PEAK  5(5P13.1) WILD-TYPE" 
                   TCGA-BR-6802                    TCGA-BR-6803 
"AMP PEAK  5(5P13.1) WILD-TYPE" "AMP PEAK  5(5P13.1) WILD-TYPE" 
                   TCGA-BR-6852                    TCGA-BR-7196 
"AMP PEAK  5(5P13.1) WILD-TYPE" "AMP PEAK  5(5P13.1) WILD-TYPE" 
                   TCGA-BR-7197                    TCGA-BR-7703 
  "AMP PEAK  5(5P13.1) MUTATED" "AMP PEAK  5(5P13.1) WILD-TYPE" 
                   TCGA-BR-7704                    TCGA-BR-7707 
  "AMP PEAK  5(5P13.1) MUTATED" "AMP PEAK  5(5P13.1) WILD-TYPE" 
                   TCGA-BR-7715                    TCGA-BR-7716 
  "AMP PEAK  5(5P13.1) MUTATED"   "AMP PEAK  5(5P13.1) MUTATED" 
                   TCGA-BR-7717                    TCGA-BR-7722 
  "AMP PEAK  5(5P13.1) MUTATED" "AMP PEAK  5(5P13.1) WILD-TYPE" 
                   TCGA-BR-7723                    TCGA-BR-7851 
"AMP PEAK  5(5P13.1) WILD-TYPE" "AMP PEAK  5(5P13.1) WILD-TYPE" 
                   TCGA-BR-7901                    TCGA-BR-7957 
  "AMP PEAK  5(5P13.1) MUTATED" "AMP PEAK  5(5P13.1) WILD-TYPE" 
                   TCGA-BR-7958                    TCGA-BR-7959 
"AMP PEAK  5(5P13.1) WILD-TYPE" "AMP PEAK  5(5P13.1) WILD-TYPE" 
                   TCGA-BR-8059                    TCGA-BR-8060 
"AMP PEAK  5(5P13.1) WILD-TYPE" "AMP PEAK  5(5P13.1) WILD-TYPE" 
                   TCGA-BR-8077                    TCGA-BR-8078 
"AMP PEAK  5(5P13.1) WILD-TYPE" "AMP PEAK  5(5P13.1) WILD-TYPE" 
                   TCGA-BR-8080                    TCGA-BR-8081 
"AMP PEAK  5(5P13.1) WILD-TYPE" "AMP PEAK  5(5P13.1) WILD-TYPE" 
                   TCGA-BR-8284                    TCGA-BR-8285 
"AMP PEAK  5(5P13.1) WILD-TYPE" "AMP PEAK  5(5P13.1) WILD-TYPE" 
                   TCGA-BR-8286                    TCGA-BR-8289 
"AMP PEAK  5(5P13.1) WILD-TYPE" "AMP PEAK  5(5P13.1) WILD-TYPE" 
                   TCGA-BR-8291                    TCGA-BR-8295 
"AMP PEAK  5(5P13.1) WILD-TYPE" "AMP PEAK  5(5P13.1) WILD-TYPE" 
                   TCGA-BR-8296                    TCGA-BR-8297 
"AMP PEAK  5(5P13.1) WILD-TYPE" "AMP PEAK  5(5P13.1) WILD-TYPE" 
                   TCGA-CD-5798                    TCGA-CD-5799 
"AMP PEAK  5(5P13.1) WILD-TYPE" "AMP PEAK  5(5P13.1) WILD-TYPE" 
                   TCGA-CD-5800                    TCGA-CD-5801 
"AMP PEAK  5(5P13.1) WILD-TYPE"   "AMP PEAK  5(5P13.1) MUTATED" 
                   TCGA-CD-5802                    TCGA-CD-5803 
"AMP PEAK  5(5P13.1) WILD-TYPE" "AMP PEAK  5(5P13.1) WILD-TYPE" 
                   TCGA-CG-4300                    TCGA-CG-4301 
"AMP PEAK  5(5P13.1) WILD-TYPE" "AMP PEAK  5(5P13.1) WILD-TYPE" 
                   TCGA-CG-4304                    TCGA-CG-4305 
"AMP PEAK  5(5P13.1) WILD-TYPE" "AMP PEAK  5(5P13.1) WILD-TYPE" 
                   TCGA-CG-4306                    TCGA-CG-4436 
"AMP PEAK  5(5P13.1) WILD-TYPE"   "AMP PEAK  5(5P13.1) MUTATED" 
                   TCGA-CG-4437                    TCGA-CG-4438 
"AMP PEAK  5(5P13.1) WILD-TYPE"   "AMP PEAK  5(5P13.1) MUTATED" 
                   TCGA-CG-4440                    TCGA-CG-4441 
"AMP PEAK  5(5P13.1) WILD-TYPE" "AMP PEAK  5(5P13.1) WILD-TYPE" 
                   TCGA-CG-4443                    TCGA-CG-4444 
"AMP PEAK  5(5P13.1) WILD-TYPE"   "AMP PEAK  5(5P13.1) MUTATED" 
                   TCGA-CG-4449                    TCGA-CG-4455 
"AMP PEAK  5(5P13.1) WILD-TYPE"   "AMP PEAK  5(5P13.1) MUTATED" 
                   TCGA-CG-4460                    TCGA-CG-4462 
  "AMP PEAK  5(5P13.1) MUTATED" "AMP PEAK  5(5P13.1) WILD-TYPE" 
                   TCGA-CG-4465                    TCGA-CG-4466 
"AMP PEAK  5(5P13.1) WILD-TYPE"   "AMP PEAK  5(5P13.1) MUTATED" 
                   TCGA-CG-4469                    TCGA-CG-4472 
  "AMP PEAK  5(5P13.1) MUTATED"   "AMP PEAK  5(5P13.1) MUTATED" 
                   TCGA-CG-4474                    TCGA-CG-4477 
"AMP PEAK  5(5P13.1) WILD-TYPE" "AMP PEAK  5(5P13.1) WILD-TYPE" 
                   TCGA-CG-5716                    TCGA-CG-5717 
"AMP PEAK  5(5P13.1) WILD-TYPE" "AMP PEAK  5(5P13.1) WILD-TYPE" 
                   TCGA-CG-5718                    TCGA-CG-5719 
  "AMP PEAK  5(5P13.1) MUTATED" "AMP PEAK  5(5P13.1) WILD-TYPE" 
                   TCGA-CG-5720                    TCGA-CG-5721 
"AMP PEAK  5(5P13.1) WILD-TYPE" "AMP PEAK  5(5P13.1) WILD-TYPE" 
                   TCGA-CG-5722                    TCGA-CG-5723 
  "AMP PEAK  5(5P13.1) MUTATED" "AMP PEAK  5(5P13.1) WILD-TYPE" 
                   TCGA-CG-5724                    TCGA-CG-5725 
  "AMP PEAK  5(5P13.1) MUTATED"   "AMP PEAK  5(5P13.1) MUTATED" 
                   TCGA-CG-5726                    TCGA-CG-5727 
"AMP PEAK  5(5P13.1) WILD-TYPE" "AMP PEAK  5(5P13.1) WILD-TYPE" 
                   TCGA-CG-5728                    TCGA-CG-5730 
"AMP PEAK  5(5P13.1) WILD-TYPE"   "AMP PEAK  5(5P13.1) MUTATED" 
                   TCGA-CG-5732                    TCGA-CG-5733 
"AMP PEAK  5(5P13.1) WILD-TYPE" "AMP PEAK  5(5P13.1) WILD-TYPE" 
                   TCGA-CG-5734                    TCGA-D7-5577 
"AMP PEAK  5(5P13.1) WILD-TYPE" "AMP PEAK  5(5P13.1) WILD-TYPE" 
                   TCGA-D7-5578                    TCGA-D7-5579 
  "AMP PEAK  5(5P13.1) MUTATED"   "AMP PEAK  5(5P13.1) MUTATED" 
                   TCGA-D7-6518                    TCGA-D7-6519 
  "AMP PEAK  5(5P13.1) MUTATED" "AMP PEAK  5(5P13.1) WILD-TYPE" 
                   TCGA-D7-6520                    TCGA-D7-6521 
"AMP PEAK  5(5P13.1) WILD-TYPE" "AMP PEAK  5(5P13.1) WILD-TYPE" 
                   TCGA-D7-6522                    TCGA-D7-6524 
"AMP PEAK  5(5P13.1) WILD-TYPE" "AMP PEAK  5(5P13.1) WILD-TYPE" 
                   TCGA-D7-6525                    TCGA-D7-6526 
"AMP PEAK  5(5P13.1) WILD-TYPE" "AMP PEAK  5(5P13.1) WILD-TYPE" 
                   TCGA-D7-6527                    TCGA-D7-6528 
  "AMP PEAK  5(5P13.1) MUTATED"   "AMP PEAK  5(5P13.1) MUTATED" 
                   TCGA-D7-6815                    TCGA-D7-6817 
"AMP PEAK  5(5P13.1) WILD-TYPE" "AMP PEAK  5(5P13.1) WILD-TYPE" 
                   TCGA-D7-6818                    TCGA-D7-6820 
  "AMP PEAK  5(5P13.1) MUTATED"   "AMP PEAK  5(5P13.1) MUTATED" 
                   TCGA-D7-6822                    TCGA-EQ-5647 
"AMP PEAK  5(5P13.1) WILD-TYPE"   "AMP PEAK  5(5P13.1) MUTATED" 
                   TCGA-EQ-8122                    TCGA-F1-6177 
"AMP PEAK  5(5P13.1) WILD-TYPE" "AMP PEAK  5(5P13.1) WILD-TYPE" 
                   TCGA-F1-6874                    TCGA-F1-6875 
"AMP PEAK  5(5P13.1) WILD-TYPE"   "AMP PEAK  5(5P13.1) MUTATED" 
                   TCGA-FP-7735                    TCGA-FP-7829 
  "AMP PEAK  5(5P13.1) MUTATED"   "AMP PEAK  5(5P13.1) MUTATED" 
                   TCGA-FP-7916                    TCGA-FP-7998 
"AMP PEAK  5(5P13.1) WILD-TYPE" "AMP PEAK  5(5P13.1) WILD-TYPE" 
                   TCGA-HJ-7597                    TCGA-IN-7806 
"AMP PEAK  5(5P13.1) WILD-TYPE" "AMP PEAK  5(5P13.1) WILD-TYPE" 
                   TCGA-IN-7808                    TCGA-IP-7968 
  "AMP PEAK  5(5P13.1) MUTATED" "AMP PEAK  5(5P13.1) WILD-TYPE" 
[1] "hr=" "1.1"
D5V2, continuous
D5V3, binary
[1] "tbl2"
                               cls
clus                            [,1] [,2]
  AMP PEAK  5(5P13.1) MUTATED     12   32
  AMP PEAK  5(5P13.1) WILD-TYPE   53   64
        clus
vv       AMP PEAK  5(5P13.1) MUTATED AMP PEAK  5(5P13.1) WILD-TYPE
  FEMALE                          12                            53
  MALE                            32                            64
D5V4, multiclass
D5V5, multiclass
    clus
vv   AMP PEAK  5(5P13.1) MUTATED AMP PEAK  5(5P13.1) WILD-TYPE
  T1                           0                             6
  T2                          16                            37
  T3                          18                            41
  T4                           7                            26
D5V6, multiclass
    clus
vv   AMP PEAK  5(5P13.1) MUTATED AMP PEAK  5(5P13.1) WILD-TYPE
  N0                          10                            40
  N1                          18                            39
  N2                           5                            19
  N3                           7                            12
D5V7, multiclass
    clus
vv   AMP PEAK  5(5P13.1) MUTATED AMP PEAK  5(5P13.1) WILD-TYPE
  M0                          36                            96
  M1                           6                            12
  MX                           2                             9
D5V8, multiclass
     clus
vv    AMP PEAK  5(5P13.1) MUTATED AMP PEAK  5(5P13.1) WILD-TYPE
  I                             6                            19
  II                           14                            29
  III                           7                            41
  IV                           12                            17
D5V9, binary
[1] "tbl2"
                               cls
clus                            [,1] [,2]
  AMP PEAK  5(5P13.1) MUTATED     41    3
  AMP PEAK  5(5P13.1) WILD-TYPE  115    2
     clus
vv    AMP PEAK  5(5P13.1) MUTATED AMP PEAK  5(5P13.1) WILD-TYPE
  NO                            3                             2
  YES                          41                           115

Clustering(6) Variable = Amp Peak  6(6p21.1) mutation analysis
D6V1, survival
                   TCGA-B7-5816                    TCGA-B7-5818 
"AMP PEAK  6(6P21.1) WILD-TYPE" "AMP PEAK  6(6P21.1) WILD-TYPE" 
                   TCGA-BR-6452                    TCGA-BR-6455 
"AMP PEAK  6(6P21.1) WILD-TYPE" "AMP PEAK  6(6P21.1) WILD-TYPE" 
                   TCGA-BR-6457                    TCGA-BR-6458 
  "AMP PEAK  6(6P21.1) MUTATED"   "AMP PEAK  6(6P21.1) MUTATED" 
                   TCGA-BR-6563                    TCGA-BR-6564 
"AMP PEAK  6(6P21.1) WILD-TYPE" "AMP PEAK  6(6P21.1) WILD-TYPE" 
                   TCGA-BR-6565                    TCGA-BR-6566 
  "AMP PEAK  6(6P21.1) MUTATED" "AMP PEAK  6(6P21.1) WILD-TYPE" 
                   TCGA-BR-6705                    TCGA-BR-6706 
"AMP PEAK  6(6P21.1) WILD-TYPE" "AMP PEAK  6(6P21.1) WILD-TYPE" 
                   TCGA-BR-6707                    TCGA-BR-6709 
"AMP PEAK  6(6P21.1) WILD-TYPE" "AMP PEAK  6(6P21.1) WILD-TYPE" 
                   TCGA-BR-6710                    TCGA-BR-6801 
"AMP PEAK  6(6P21.1) WILD-TYPE" "AMP PEAK  6(6P21.1) WILD-TYPE" 
                   TCGA-BR-6802                    TCGA-BR-6803 
"AMP PEAK  6(6P21.1) WILD-TYPE" "AMP PEAK  6(6P21.1) WILD-TYPE" 
                   TCGA-BR-6852                    TCGA-BR-7196 
"AMP PEAK  6(6P21.1) WILD-TYPE" "AMP PEAK  6(6P21.1) WILD-TYPE" 
                   TCGA-BR-7197                    TCGA-BR-7703 
  "AMP PEAK  6(6P21.1) MUTATED" "AMP PEAK  6(6P21.1) WILD-TYPE" 
                   TCGA-BR-7704                    TCGA-BR-7707 
  "AMP PEAK  6(6P21.1) MUTATED" "AMP PEAK  6(6P21.1) WILD-TYPE" 
                   TCGA-BR-7715                    TCGA-BR-7716 
  "AMP PEAK  6(6P21.1) MUTATED" "AMP PEAK  6(6P21.1) WILD-TYPE" 
                   TCGA-BR-7717                    TCGA-BR-7722 
  "AMP PEAK  6(6P21.1) MUTATED" "AMP PEAK  6(6P21.1) WILD-TYPE" 
                   TCGA-BR-7723                    TCGA-BR-7851 
  "AMP PEAK  6(6P21.1) MUTATED" "AMP PEAK  6(6P21.1) WILD-TYPE" 
                   TCGA-BR-7901                    TCGA-BR-7957 
  "AMP PEAK  6(6P21.1) MUTATED" "AMP PEAK  6(6P21.1) WILD-TYPE" 
                   TCGA-BR-7958                    TCGA-BR-7959 
"AMP PEAK  6(6P21.1) WILD-TYPE" "AMP PEAK  6(6P21.1) WILD-TYPE" 
                   TCGA-BR-8059                    TCGA-BR-8060 
"AMP PEAK  6(6P21.1) WILD-TYPE" "AMP PEAK  6(6P21.1) WILD-TYPE" 
                   TCGA-BR-8077                    TCGA-BR-8078 
"AMP PEAK  6(6P21.1) WILD-TYPE" "AMP PEAK  6(6P21.1) WILD-TYPE" 
                   TCGA-BR-8080                    TCGA-BR-8081 
"AMP PEAK  6(6P21.1) WILD-TYPE" "AMP PEAK  6(6P21.1) WILD-TYPE" 
                   TCGA-BR-8284                    TCGA-BR-8285 
"AMP PEAK  6(6P21.1) WILD-TYPE" "AMP PEAK  6(6P21.1) WILD-TYPE" 
                   TCGA-BR-8286                    TCGA-BR-8289 
"AMP PEAK  6(6P21.1) WILD-TYPE" "AMP PEAK  6(6P21.1) WILD-TYPE" 
                   TCGA-BR-8291                    TCGA-BR-8295 
"AMP PEAK  6(6P21.1) WILD-TYPE" "AMP PEAK  6(6P21.1) WILD-TYPE" 
                   TCGA-BR-8296                    TCGA-BR-8297 
"AMP PEAK  6(6P21.1) WILD-TYPE" "AMP PEAK  6(6P21.1) WILD-TYPE" 
                   TCGA-CD-5798                    TCGA-CD-5799 
"AMP PEAK  6(6P21.1) WILD-TYPE"   "AMP PEAK  6(6P21.1) MUTATED" 
                   TCGA-CD-5800                    TCGA-CD-5801 
"AMP PEAK  6(6P21.1) WILD-TYPE" "AMP PEAK  6(6P21.1) WILD-TYPE" 
                   TCGA-CD-5802                    TCGA-CD-5803 
"AMP PEAK  6(6P21.1) WILD-TYPE" "AMP PEAK  6(6P21.1) WILD-TYPE" 
                   TCGA-CG-4300                    TCGA-CG-4301 
"AMP PEAK  6(6P21.1) WILD-TYPE" "AMP PEAK  6(6P21.1) WILD-TYPE" 
                   TCGA-CG-4304                    TCGA-CG-4305 
"AMP PEAK  6(6P21.1) WILD-TYPE" "AMP PEAK  6(6P21.1) WILD-TYPE" 
                   TCGA-CG-4306                    TCGA-CG-4436 
"AMP PEAK  6(6P21.1) WILD-TYPE"   "AMP PEAK  6(6P21.1) MUTATED" 
                   TCGA-CG-4437                    TCGA-CG-4438 
"AMP PEAK  6(6P21.1) WILD-TYPE"   "AMP PEAK  6(6P21.1) MUTATED" 
                   TCGA-CG-4440                    TCGA-CG-4441 
"AMP PEAK  6(6P21.1) WILD-TYPE" "AMP PEAK  6(6P21.1) WILD-TYPE" 
                   TCGA-CG-4443                    TCGA-CG-4444 
"AMP PEAK  6(6P21.1) WILD-TYPE" "AMP PEAK  6(6P21.1) WILD-TYPE" 
                   TCGA-CG-4449                    TCGA-CG-4455 
  "AMP PEAK  6(6P21.1) MUTATED"   "AMP PEAK  6(6P21.1) MUTATED" 
                   TCGA-CG-4460                    TCGA-CG-4462 
"AMP PEAK  6(6P21.1) WILD-TYPE" "AMP PEAK  6(6P21.1) WILD-TYPE" 
                   TCGA-CG-4465                    TCGA-CG-4466 
"AMP PEAK  6(6P21.1) WILD-TYPE"   "AMP PEAK  6(6P21.1) MUTATED" 
                   TCGA-CG-4469                    TCGA-CG-4472 
"AMP PEAK  6(6P21.1) WILD-TYPE" "AMP PEAK  6(6P21.1) WILD-TYPE" 
                   TCGA-CG-4474                    TCGA-CG-4477 
"AMP PEAK  6(6P21.1) WILD-TYPE" "AMP PEAK  6(6P21.1) WILD-TYPE" 
                   TCGA-CG-5716                    TCGA-CG-5717 
"AMP PEAK  6(6P21.1) WILD-TYPE" "AMP PEAK  6(6P21.1) WILD-TYPE" 
                   TCGA-CG-5718                    TCGA-CG-5719 
  "AMP PEAK  6(6P21.1) MUTATED" "AMP PEAK  6(6P21.1) WILD-TYPE" 
                   TCGA-CG-5720                    TCGA-CG-5721 
"AMP PEAK  6(6P21.1) WILD-TYPE" "AMP PEAK  6(6P21.1) WILD-TYPE" 
                   TCGA-CG-5722                    TCGA-CG-5723 
"AMP PEAK  6(6P21.1) WILD-TYPE" "AMP PEAK  6(6P21.1) WILD-TYPE" 
                   TCGA-CG-5724                    TCGA-CG-5725 
"AMP PEAK  6(6P21.1) WILD-TYPE" "AMP PEAK  6(6P21.1) WILD-TYPE" 
                   TCGA-CG-5726                    TCGA-CG-5727 
"AMP PEAK  6(6P21.1) WILD-TYPE"   "AMP PEAK  6(6P21.1) MUTATED" 
                   TCGA-CG-5728                    TCGA-CG-5730 
"AMP PEAK  6(6P21.1) WILD-TYPE"   "AMP PEAK  6(6P21.1) MUTATED" 
                   TCGA-CG-5732                    TCGA-CG-5733 
  "AMP PEAK  6(6P21.1) MUTATED" "AMP PEAK  6(6P21.1) WILD-TYPE" 
                   TCGA-CG-5734                    TCGA-D7-5577 
"AMP PEAK  6(6P21.1) WILD-TYPE" "AMP PEAK  6(6P21.1) WILD-TYPE" 
                   TCGA-D7-5578                    TCGA-D7-5579 
"AMP PEAK  6(6P21.1) WILD-TYPE" "AMP PEAK  6(6P21.1) WILD-TYPE" 
                   TCGA-D7-6518                    TCGA-D7-6519 
  "AMP PEAK  6(6P21.1) MUTATED" "AMP PEAK  6(6P21.1) WILD-TYPE" 
                   TCGA-D7-6520                    TCGA-D7-6521 
"AMP PEAK  6(6P21.1) WILD-TYPE" "AMP PEAK  6(6P21.1) WILD-TYPE" 
                   TCGA-D7-6522                    TCGA-D7-6524 
"AMP PEAK  6(6P21.1) WILD-TYPE" "AMP PEAK  6(6P21.1) WILD-TYPE" 
                   TCGA-D7-6525                    TCGA-D7-6526 
"AMP PEAK  6(6P21.1) WILD-TYPE" "AMP PEAK  6(6P21.1) WILD-TYPE" 
                   TCGA-D7-6527                    TCGA-D7-6528 
  "AMP PEAK  6(6P21.1) MUTATED"   "AMP PEAK  6(6P21.1) MUTATED" 
                   TCGA-D7-6815                    TCGA-D7-6817 
  "AMP PEAK  6(6P21.1) MUTATED" "AMP PEAK  6(6P21.1) WILD-TYPE" 
                   TCGA-D7-6818                    TCGA-D7-6820 
  "AMP PEAK  6(6P21.1) MUTATED"   "AMP PEAK  6(6P21.1) MUTATED" 
                   TCGA-D7-6822                    TCGA-EQ-5647 
  "AMP PEAK  6(6P21.1) MUTATED" "AMP PEAK  6(6P21.1) WILD-TYPE" 
                   TCGA-EQ-8122                    TCGA-F1-6177 
"AMP PEAK  6(6P21.1) WILD-TYPE" "AMP PEAK  6(6P21.1) WILD-TYPE" 
                   TCGA-F1-6874                    TCGA-F1-6875 
"AMP PEAK  6(6P21.1) WILD-TYPE" "AMP PEAK  6(6P21.1) WILD-TYPE" 
                   TCGA-FP-7735                    TCGA-FP-7829 
  "AMP PEAK  6(6P21.1) MUTATED"   "AMP PEAK  6(6P21.1) MUTATED" 
                   TCGA-FP-7916                    TCGA-FP-7998 
"AMP PEAK  6(6P21.1) WILD-TYPE" "AMP PEAK  6(6P21.1) WILD-TYPE" 
                   TCGA-HJ-7597                    TCGA-IN-7806 
"AMP PEAK  6(6P21.1) WILD-TYPE" "AMP PEAK  6(6P21.1) WILD-TYPE" 
                   TCGA-IN-7808                    TCGA-IP-7968 
"AMP PEAK  6(6P21.1) WILD-TYPE"   "AMP PEAK  6(6P21.1) MUTATED" 
                   TCGA-B7-5816                    TCGA-B7-5818 
"AMP PEAK  6(6P21.1) WILD-TYPE" "AMP PEAK  6(6P21.1) WILD-TYPE" 
                   TCGA-BR-6452                    TCGA-BR-6455 
"AMP PEAK  6(6P21.1) WILD-TYPE" "AMP PEAK  6(6P21.1) WILD-TYPE" 
                   TCGA-BR-6457                    TCGA-BR-6458 
  "AMP PEAK  6(6P21.1) MUTATED"   "AMP PEAK  6(6P21.1) MUTATED" 
                   TCGA-BR-6563                    TCGA-BR-6564 
"AMP PEAK  6(6P21.1) WILD-TYPE" "AMP PEAK  6(6P21.1) WILD-TYPE" 
                   TCGA-BR-6565                    TCGA-BR-6566 
  "AMP PEAK  6(6P21.1) MUTATED" "AMP PEAK  6(6P21.1) WILD-TYPE" 
                   TCGA-BR-6705                    TCGA-BR-6706 
"AMP PEAK  6(6P21.1) WILD-TYPE" "AMP PEAK  6(6P21.1) WILD-TYPE" 
                   TCGA-BR-6707                    TCGA-BR-6709 
"AMP PEAK  6(6P21.1) WILD-TYPE" "AMP PEAK  6(6P21.1) WILD-TYPE" 
                   TCGA-BR-6710                    TCGA-BR-6801 
"AMP PEAK  6(6P21.1) WILD-TYPE" "AMP PEAK  6(6P21.1) WILD-TYPE" 
                   TCGA-BR-6802                    TCGA-BR-6803 
"AMP PEAK  6(6P21.1) WILD-TYPE" "AMP PEAK  6(6P21.1) WILD-TYPE" 
                   TCGA-BR-6852                    TCGA-BR-7196 
"AMP PEAK  6(6P21.1) WILD-TYPE" "AMP PEAK  6(6P21.1) WILD-TYPE" 
                   TCGA-BR-7197                    TCGA-BR-7703 
  "AMP PEAK  6(6P21.1) MUTATED" "AMP PEAK  6(6P21.1) WILD-TYPE" 
                   TCGA-BR-7704                    TCGA-BR-7707 
  "AMP PEAK  6(6P21.1) MUTATED" "AMP PEAK  6(6P21.1) WILD-TYPE" 
                   TCGA-BR-7715                    TCGA-BR-7716 
  "AMP PEAK  6(6P21.1) MUTATED" "AMP PEAK  6(6P21.1) WILD-TYPE" 
                   TCGA-BR-7717                    TCGA-BR-7722 
  "AMP PEAK  6(6P21.1) MUTATED" "AMP PEAK  6(6P21.1) WILD-TYPE" 
                   TCGA-BR-7723                    TCGA-BR-7851 
  "AMP PEAK  6(6P21.1) MUTATED" "AMP PEAK  6(6P21.1) WILD-TYPE" 
                   TCGA-BR-7901                    TCGA-BR-7957 
  "AMP PEAK  6(6P21.1) MUTATED" "AMP PEAK  6(6P21.1) WILD-TYPE" 
                   TCGA-BR-7958                    TCGA-BR-7959 
"AMP PEAK  6(6P21.1) WILD-TYPE" "AMP PEAK  6(6P21.1) WILD-TYPE" 
                   TCGA-BR-8059                    TCGA-BR-8060 
"AMP PEAK  6(6P21.1) WILD-TYPE" "AMP PEAK  6(6P21.1) WILD-TYPE" 
                   TCGA-BR-8077                    TCGA-BR-8078 
"AMP PEAK  6(6P21.1) WILD-TYPE" "AMP PEAK  6(6P21.1) WILD-TYPE" 
                   TCGA-BR-8080                    TCGA-BR-8081 
"AMP PEAK  6(6P21.1) WILD-TYPE" "AMP PEAK  6(6P21.1) WILD-TYPE" 
                   TCGA-BR-8284                    TCGA-BR-8285 
"AMP PEAK  6(6P21.1) WILD-TYPE" "AMP PEAK  6(6P21.1) WILD-TYPE" 
                   TCGA-BR-8286                    TCGA-BR-8289 
"AMP PEAK  6(6P21.1) WILD-TYPE" "AMP PEAK  6(6P21.1) WILD-TYPE" 
                   TCGA-BR-8291                    TCGA-BR-8295 
"AMP PEAK  6(6P21.1) WILD-TYPE" "AMP PEAK  6(6P21.1) WILD-TYPE" 
                   TCGA-BR-8296                    TCGA-BR-8297 
"AMP PEAK  6(6P21.1) WILD-TYPE" "AMP PEAK  6(6P21.1) WILD-TYPE" 
                   TCGA-CD-5798                    TCGA-CD-5799 
"AMP PEAK  6(6P21.1) WILD-TYPE"   "AMP PEAK  6(6P21.1) MUTATED" 
                   TCGA-CD-5800                    TCGA-CD-5801 
"AMP PEAK  6(6P21.1) WILD-TYPE" "AMP PEAK  6(6P21.1) WILD-TYPE" 
                   TCGA-CD-5802                    TCGA-CD-5803 
"AMP PEAK  6(6P21.1) WILD-TYPE" "AMP PEAK  6(6P21.1) WILD-TYPE" 
                   TCGA-CG-4300                    TCGA-CG-4301 
"AMP PEAK  6(6P21.1) WILD-TYPE" "AMP PEAK  6(6P21.1) WILD-TYPE" 
                   TCGA-CG-4304                    TCGA-CG-4305 
"AMP PEAK  6(6P21.1) WILD-TYPE" "AMP PEAK  6(6P21.1) WILD-TYPE" 
                   TCGA-CG-4306                    TCGA-CG-4436 
"AMP PEAK  6(6P21.1) WILD-TYPE"   "AMP PEAK  6(6P21.1) MUTATED" 
                   TCGA-CG-4437                    TCGA-CG-4438 
"AMP PEAK  6(6P21.1) WILD-TYPE"   "AMP PEAK  6(6P21.1) MUTATED" 
                   TCGA-CG-4440                    TCGA-CG-4441 
"AMP PEAK  6(6P21.1) WILD-TYPE" "AMP PEAK  6(6P21.1) WILD-TYPE" 
                   TCGA-CG-4443                    TCGA-CG-4444 
"AMP PEAK  6(6P21.1) WILD-TYPE" "AMP PEAK  6(6P21.1) WILD-TYPE" 
                   TCGA-CG-4449                    TCGA-CG-4455 
  "AMP PEAK  6(6P21.1) MUTATED"   "AMP PEAK  6(6P21.1) MUTATED" 
                   TCGA-CG-4460                    TCGA-CG-4462 
"AMP PEAK  6(6P21.1) WILD-TYPE" "AMP PEAK  6(6P21.1) WILD-TYPE" 
                   TCGA-CG-4465                    TCGA-CG-4466 
"AMP PEAK  6(6P21.1) WILD-TYPE"   "AMP PEAK  6(6P21.1) MUTATED" 
                   TCGA-CG-4469                    TCGA-CG-4472 
"AMP PEAK  6(6P21.1) WILD-TYPE" "AMP PEAK  6(6P21.1) WILD-TYPE" 
                   TCGA-CG-4474                    TCGA-CG-4477 
"AMP PEAK  6(6P21.1) WILD-TYPE" "AMP PEAK  6(6P21.1) WILD-TYPE" 
                   TCGA-CG-5716                    TCGA-CG-5717 
"AMP PEAK  6(6P21.1) WILD-TYPE" "AMP PEAK  6(6P21.1) WILD-TYPE" 
                   TCGA-CG-5718                    TCGA-CG-5719 
  "AMP PEAK  6(6P21.1) MUTATED" "AMP PEAK  6(6P21.1) WILD-TYPE" 
                   TCGA-CG-5720                    TCGA-CG-5721 
"AMP PEAK  6(6P21.1) WILD-TYPE" "AMP PEAK  6(6P21.1) WILD-TYPE" 
                   TCGA-CG-5722                    TCGA-CG-5723 
"AMP PEAK  6(6P21.1) WILD-TYPE" "AMP PEAK  6(6P21.1) WILD-TYPE" 
                   TCGA-CG-5724                    TCGA-CG-5725 
"AMP PEAK  6(6P21.1) WILD-TYPE" "AMP PEAK  6(6P21.1) WILD-TYPE" 
                   TCGA-CG-5726                    TCGA-CG-5727 
"AMP PEAK  6(6P21.1) WILD-TYPE"   "AMP PEAK  6(6P21.1) MUTATED" 
                   TCGA-CG-5728                    TCGA-CG-5730 
"AMP PEAK  6(6P21.1) WILD-TYPE"   "AMP PEAK  6(6P21.1) MUTATED" 
                   TCGA-CG-5732                    TCGA-CG-5733 
  "AMP PEAK  6(6P21.1) MUTATED" "AMP PEAK  6(6P21.1) WILD-TYPE" 
                   TCGA-CG-5734                    TCGA-D7-5577 
"AMP PEAK  6(6P21.1) WILD-TYPE" "AMP PEAK  6(6P21.1) WILD-TYPE" 
                   TCGA-D7-5578                    TCGA-D7-5579 
"AMP PEAK  6(6P21.1) WILD-TYPE" "AMP PEAK  6(6P21.1) WILD-TYPE" 
                   TCGA-D7-6518                    TCGA-D7-6519 
  "AMP PEAK  6(6P21.1) MUTATED" "AMP PEAK  6(6P21.1) WILD-TYPE" 
                   TCGA-D7-6520                    TCGA-D7-6521 
"AMP PEAK  6(6P21.1) WILD-TYPE" "AMP PEAK  6(6P21.1) WILD-TYPE" 
                   TCGA-D7-6522                    TCGA-D7-6524 
"AMP PEAK  6(6P21.1) WILD-TYPE" "AMP PEAK  6(6P21.1) WILD-TYPE" 
                   TCGA-D7-6525                    TCGA-D7-6526 
"AMP PEAK  6(6P21.1) WILD-TYPE" "AMP PEAK  6(6P21.1) WILD-TYPE" 
                   TCGA-D7-6527                    TCGA-D7-6528 
  "AMP PEAK  6(6P21.1) MUTATED"   "AMP PEAK  6(6P21.1) MUTATED" 
                   TCGA-D7-6815                    TCGA-D7-6817 
  "AMP PEAK  6(6P21.1) MUTATED" "AMP PEAK  6(6P21.1) WILD-TYPE" 
                   TCGA-D7-6818                    TCGA-D7-6820 
  "AMP PEAK  6(6P21.1) MUTATED"   "AMP PEAK  6(6P21.1) MUTATED" 
                   TCGA-D7-6822                    TCGA-EQ-5647 
  "AMP PEAK  6(6P21.1) MUTATED" "AMP PEAK  6(6P21.1) WILD-TYPE" 
                   TCGA-EQ-8122                    TCGA-F1-6177 
"AMP PEAK  6(6P21.1) WILD-TYPE" "AMP PEAK  6(6P21.1) WILD-TYPE" 
                   TCGA-F1-6874                    TCGA-F1-6875 
"AMP PEAK  6(6P21.1) WILD-TYPE" "AMP PEAK  6(6P21.1) WILD-TYPE" 
                   TCGA-FP-7735                    TCGA-FP-7829 
  "AMP PEAK  6(6P21.1) MUTATED"   "AMP PEAK  6(6P21.1) MUTATED" 
                   TCGA-FP-7916                    TCGA-FP-7998 
"AMP PEAK  6(6P21.1) WILD-TYPE" "AMP PEAK  6(6P21.1) WILD-TYPE" 
                   TCGA-HJ-7597                    TCGA-IN-7806 
"AMP PEAK  6(6P21.1) WILD-TYPE" "AMP PEAK  6(6P21.1) WILD-TYPE" 
                   TCGA-IN-7808                    TCGA-IP-7968 
"AMP PEAK  6(6P21.1) WILD-TYPE"   "AMP PEAK  6(6P21.1) MUTATED" 
                   TCGA-B7-5816                    TCGA-B7-5818 
"AMP PEAK  6(6P21.1) WILD-TYPE" "AMP PEAK  6(6P21.1) WILD-TYPE" 
                   TCGA-BR-6452                    TCGA-BR-6455 
"AMP PEAK  6(6P21.1) WILD-TYPE" "AMP PEAK  6(6P21.1) WILD-TYPE" 
                   TCGA-BR-6457                    TCGA-BR-6458 
  "AMP PEAK  6(6P21.1) MUTATED"   "AMP PEAK  6(6P21.1) MUTATED" 
                   TCGA-BR-6563                    TCGA-BR-6564 
"AMP PEAK  6(6P21.1) WILD-TYPE" "AMP PEAK  6(6P21.1) WILD-TYPE" 
                   TCGA-BR-6565                    TCGA-BR-6566 
  "AMP PEAK  6(6P21.1) MUTATED" "AMP PEAK  6(6P21.1) WILD-TYPE" 
                   TCGA-BR-6705                    TCGA-BR-6706 
"AMP PEAK  6(6P21.1) WILD-TYPE" "AMP PEAK  6(6P21.1) WILD-TYPE" 
                   TCGA-BR-6707                    TCGA-BR-6709 
"AMP PEAK  6(6P21.1) WILD-TYPE" "AMP PEAK  6(6P21.1) WILD-TYPE" 
                   TCGA-BR-6710                    TCGA-BR-6801 
"AMP PEAK  6(6P21.1) WILD-TYPE" "AMP PEAK  6(6P21.1) WILD-TYPE" 
                   TCGA-BR-6802                    TCGA-BR-6803 
"AMP PEAK  6(6P21.1) WILD-TYPE" "AMP PEAK  6(6P21.1) WILD-TYPE" 
                   TCGA-BR-6852                    TCGA-BR-7196 
"AMP PEAK  6(6P21.1) WILD-TYPE" "AMP PEAK  6(6P21.1) WILD-TYPE" 
                   TCGA-BR-7197                    TCGA-BR-7703 
  "AMP PEAK  6(6P21.1) MUTATED" "AMP PEAK  6(6P21.1) WILD-TYPE" 
                   TCGA-BR-7704                    TCGA-BR-7707 
  "AMP PEAK  6(6P21.1) MUTATED" "AMP PEAK  6(6P21.1) WILD-TYPE" 
                   TCGA-BR-7715                    TCGA-BR-7716 
  "AMP PEAK  6(6P21.1) MUTATED" "AMP PEAK  6(6P21.1) WILD-TYPE" 
                   TCGA-BR-7717                    TCGA-BR-7722 
  "AMP PEAK  6(6P21.1) MUTATED" "AMP PEAK  6(6P21.1) WILD-TYPE" 
                   TCGA-BR-7723                    TCGA-BR-7851 
  "AMP PEAK  6(6P21.1) MUTATED" "AMP PEAK  6(6P21.1) WILD-TYPE" 
                   TCGA-BR-7901                    TCGA-BR-7957 
  "AMP PEAK  6(6P21.1) MUTATED" "AMP PEAK  6(6P21.1) WILD-TYPE" 
                   TCGA-BR-7958                    TCGA-BR-7959 
"AMP PEAK  6(6P21.1) WILD-TYPE" "AMP PEAK  6(6P21.1) WILD-TYPE" 
                   TCGA-BR-8059                    TCGA-BR-8060 
"AMP PEAK  6(6P21.1) WILD-TYPE" "AMP PEAK  6(6P21.1) WILD-TYPE" 
                   TCGA-BR-8077                    TCGA-BR-8078 
"AMP PEAK  6(6P21.1) WILD-TYPE" "AMP PEAK  6(6P21.1) WILD-TYPE" 
                   TCGA-BR-8080                    TCGA-BR-8081 
"AMP PEAK  6(6P21.1) WILD-TYPE" "AMP PEAK  6(6P21.1) WILD-TYPE" 
                   TCGA-BR-8284                    TCGA-BR-8285 
"AMP PEAK  6(6P21.1) WILD-TYPE" "AMP PEAK  6(6P21.1) WILD-TYPE" 
                   TCGA-BR-8286                    TCGA-BR-8289 
"AMP PEAK  6(6P21.1) WILD-TYPE" "AMP PEAK  6(6P21.1) WILD-TYPE" 
                   TCGA-BR-8291                    TCGA-BR-8295 
"AMP PEAK  6(6P21.1) WILD-TYPE" "AMP PEAK  6(6P21.1) WILD-TYPE" 
                   TCGA-BR-8296                    TCGA-BR-8297 
"AMP PEAK  6(6P21.1) WILD-TYPE" "AMP PEAK  6(6P21.1) WILD-TYPE" 
                   TCGA-CD-5798                    TCGA-CD-5799 
"AMP PEAK  6(6P21.1) WILD-TYPE"   "AMP PEAK  6(6P21.1) MUTATED" 
                   TCGA-CD-5800                    TCGA-CD-5801 
"AMP PEAK  6(6P21.1) WILD-TYPE" "AMP PEAK  6(6P21.1) WILD-TYPE" 
                   TCGA-CD-5802                    TCGA-CD-5803 
"AMP PEAK  6(6P21.1) WILD-TYPE" "AMP PEAK  6(6P21.1) WILD-TYPE" 
                   TCGA-CG-4300                    TCGA-CG-4301 
"AMP PEAK  6(6P21.1) WILD-TYPE" "AMP PEAK  6(6P21.1) WILD-TYPE" 
                   TCGA-CG-4304                    TCGA-CG-4305 
"AMP PEAK  6(6P21.1) WILD-TYPE" "AMP PEAK  6(6P21.1) WILD-TYPE" 
                   TCGA-CG-4306                    TCGA-CG-4436 
"AMP PEAK  6(6P21.1) WILD-TYPE"   "AMP PEAK  6(6P21.1) MUTATED" 
                   TCGA-CG-4437                    TCGA-CG-4438 
"AMP PEAK  6(6P21.1) WILD-TYPE"   "AMP PEAK  6(6P21.1) MUTATED" 
                   TCGA-CG-4440                    TCGA-CG-4441 
"AMP PEAK  6(6P21.1) WILD-TYPE" "AMP PEAK  6(6P21.1) WILD-TYPE" 
                   TCGA-CG-4443                    TCGA-CG-4444 
"AMP PEAK  6(6P21.1) WILD-TYPE" "AMP PEAK  6(6P21.1) WILD-TYPE" 
                   TCGA-CG-4449                    TCGA-CG-4455 
  "AMP PEAK  6(6P21.1) MUTATED"   "AMP PEAK  6(6P21.1) MUTATED" 
                   TCGA-CG-4460                    TCGA-CG-4462 
"AMP PEAK  6(6P21.1) WILD-TYPE" "AMP PEAK  6(6P21.1) WILD-TYPE" 
                   TCGA-CG-4465                    TCGA-CG-4466 
"AMP PEAK  6(6P21.1) WILD-TYPE"   "AMP PEAK  6(6P21.1) MUTATED" 
                   TCGA-CG-4469                    TCGA-CG-4472 
"AMP PEAK  6(6P21.1) WILD-TYPE" "AMP PEAK  6(6P21.1) WILD-TYPE" 
                   TCGA-CG-4474                    TCGA-CG-4477 
"AMP PEAK  6(6P21.1) WILD-TYPE" "AMP PEAK  6(6P21.1) WILD-TYPE" 
                   TCGA-CG-5716                    TCGA-CG-5717 
"AMP PEAK  6(6P21.1) WILD-TYPE" "AMP PEAK  6(6P21.1) WILD-TYPE" 
                   TCGA-CG-5718                    TCGA-CG-5719 
  "AMP PEAK  6(6P21.1) MUTATED" "AMP PEAK  6(6P21.1) WILD-TYPE" 
                   TCGA-CG-5720                    TCGA-CG-5721 
"AMP PEAK  6(6P21.1) WILD-TYPE" "AMP PEAK  6(6P21.1) WILD-TYPE" 
                   TCGA-CG-5722                    TCGA-CG-5723 
"AMP PEAK  6(6P21.1) WILD-TYPE" "AMP PEAK  6(6P21.1) WILD-TYPE" 
                   TCGA-CG-5724                    TCGA-CG-5725 
"AMP PEAK  6(6P21.1) WILD-TYPE" "AMP PEAK  6(6P21.1) WILD-TYPE" 
                   TCGA-CG-5726                    TCGA-CG-5727 
"AMP PEAK  6(6P21.1) WILD-TYPE"   "AMP PEAK  6(6P21.1) MUTATED" 
                   TCGA-CG-5728                    TCGA-CG-5730 
"AMP PEAK  6(6P21.1) WILD-TYPE"   "AMP PEAK  6(6P21.1) MUTATED" 
                   TCGA-CG-5732                    TCGA-CG-5733 
  "AMP PEAK  6(6P21.1) MUTATED" "AMP PEAK  6(6P21.1) WILD-TYPE" 
                   TCGA-CG-5734                    TCGA-D7-5577 
"AMP PEAK  6(6P21.1) WILD-TYPE" "AMP PEAK  6(6P21.1) WILD-TYPE" 
                   TCGA-D7-5578                    TCGA-D7-5579 
"AMP PEAK  6(6P21.1) WILD-TYPE" "AMP PEAK  6(6P21.1) WILD-TYPE" 
                   TCGA-D7-6518                    TCGA-D7-6519 
  "AMP PEAK  6(6P21.1) MUTATED" "AMP PEAK  6(6P21.1) WILD-TYPE" 
                   TCGA-D7-6520                    TCGA-D7-6521 
"AMP PEAK  6(6P21.1) WILD-TYPE" "AMP PEAK  6(6P21.1) WILD-TYPE" 
                   TCGA-D7-6522                    TCGA-D7-6524 
"AMP PEAK  6(6P21.1) WILD-TYPE" "AMP PEAK  6(6P21.1) WILD-TYPE" 
                   TCGA-D7-6525                    TCGA-D7-6526 
"AMP PEAK  6(6P21.1) WILD-TYPE" "AMP PEAK  6(6P21.1) WILD-TYPE" 
                   TCGA-D7-6527                    TCGA-D7-6528 
  "AMP PEAK  6(6P21.1) MUTATED"   "AMP PEAK  6(6P21.1) MUTATED" 
                   TCGA-D7-6815                    TCGA-D7-6817 
  "AMP PEAK  6(6P21.1) MUTATED" "AMP PEAK  6(6P21.1) WILD-TYPE" 
                   TCGA-D7-6818                    TCGA-D7-6820 
  "AMP PEAK  6(6P21.1) MUTATED"   "AMP PEAK  6(6P21.1) MUTATED" 
                   TCGA-D7-6822                    TCGA-EQ-5647 
  "AMP PEAK  6(6P21.1) MUTATED" "AMP PEAK  6(6P21.1) WILD-TYPE" 
                   TCGA-EQ-8122                    TCGA-F1-6177 
"AMP PEAK  6(6P21.1) WILD-TYPE" "AMP PEAK  6(6P21.1) WILD-TYPE" 
                   TCGA-F1-6874                    TCGA-F1-6875 
"AMP PEAK  6(6P21.1) WILD-TYPE" "AMP PEAK  6(6P21.1) WILD-TYPE" 
                   TCGA-FP-7735                    TCGA-FP-7829 
  "AMP PEAK  6(6P21.1) MUTATED"   "AMP PEAK  6(6P21.1) MUTATED" 
                   TCGA-FP-7916                    TCGA-FP-7998 
"AMP PEAK  6(6P21.1) WILD-TYPE" "AMP PEAK  6(6P21.1) WILD-TYPE" 
                   TCGA-HJ-7597                    TCGA-IN-7806 
"AMP PEAK  6(6P21.1) WILD-TYPE" "AMP PEAK  6(6P21.1) WILD-TYPE" 
                   TCGA-IN-7808                    TCGA-IP-7968 
"AMP PEAK  6(6P21.1) WILD-TYPE"   "AMP PEAK  6(6P21.1) MUTATED" 
[1] "hr="     "3.2e+08"
D6V2, continuous
D6V3, binary
[1] "tbl2"
                               cls
clus                            [,1] [,2]
  AMP PEAK  6(6P21.1) MUTATED     14   31
  AMP PEAK  6(6P21.1) WILD-TYPE   51   65
        clus
vv       AMP PEAK  6(6P21.1) MUTATED AMP PEAK  6(6P21.1) WILD-TYPE
  FEMALE                          14                            51
  MALE                            31                            65
D6V4, multiclass
D6V5, multiclass
    clus
vv   AMP PEAK  6(6P21.1) MUTATED AMP PEAK  6(6P21.1) WILD-TYPE
  T1                           1                             5
  T2                          18                            35
  T3                          17                            42
  T4                           3                            30
D6V6, multiclass
    clus
vv   AMP PEAK  6(6P21.1) MUTATED AMP PEAK  6(6P21.1) WILD-TYPE
  N0                          15                            35
  N1                          19                            38
  N2                           5                            19
  N3                           3                            16
D6V7, multiclass
    clus
vv   AMP PEAK  6(6P21.1) MUTATED AMP PEAK  6(6P21.1) WILD-TYPE
  M0                          40                            92
  M1                           1                            17
  MX                           4                             7
D6V8, multiclass
     clus
vv    AMP PEAK  6(6P21.1) MUTATED AMP PEAK  6(6P21.1) WILD-TYPE
  I                             8                            17
  II                           16                            27
  III                           8                            40
  IV                            7                            22
D6V9, binary
[1] "tbl2"
                               cls
clus                            [,1] [,2]
  AMP PEAK  6(6P21.1) MUTATED     42    3
  AMP PEAK  6(6P21.1) WILD-TYPE  114    2
     clus
vv    AMP PEAK  6(6P21.1) MUTATED AMP PEAK  6(6P21.1) WILD-TYPE
  NO                            3                             2
  YES                          42                           114

Clustering(7) Variable = Amp Peak  7(6q12) mutation analysis
D7V1, survival
                 TCGA-B7-5816                  TCGA-B7-5818 
"AMP PEAK  7(6Q12) WILD-TYPE" "AMP PEAK  7(6Q12) WILD-TYPE" 
                 TCGA-BR-6452                  TCGA-BR-6455 
"AMP PEAK  7(6Q12) WILD-TYPE" "AMP PEAK  7(6Q12) WILD-TYPE" 
                 TCGA-BR-6457                  TCGA-BR-6458 
"AMP PEAK  7(6Q12) WILD-TYPE"   "AMP PEAK  7(6Q12) MUTATED" 
                 TCGA-BR-6563                  TCGA-BR-6564 
"AMP PEAK  7(6Q12) WILD-TYPE" "AMP PEAK  7(6Q12) WILD-TYPE" 
                 TCGA-BR-6565                  TCGA-BR-6566 
"AMP PEAK  7(6Q12) WILD-TYPE" "AMP PEAK  7(6Q12) WILD-TYPE" 
                 TCGA-BR-6705                  TCGA-BR-6706 
"AMP PEAK  7(6Q12) WILD-TYPE" "AMP PEAK  7(6Q12) WILD-TYPE" 
                 TCGA-BR-6707                  TCGA-BR-6709 
"AMP PEAK  7(6Q12) WILD-TYPE" "AMP PEAK  7(6Q12) WILD-TYPE" 
                 TCGA-BR-6710                  TCGA-BR-6801 
"AMP PEAK  7(6Q12) WILD-TYPE" "AMP PEAK  7(6Q12) WILD-TYPE" 
                 TCGA-BR-6802                  TCGA-BR-6803 
"AMP PEAK  7(6Q12) WILD-TYPE" "AMP PEAK  7(6Q12) WILD-TYPE" 
                 TCGA-BR-6852                  TCGA-BR-7196 
"AMP PEAK  7(6Q12) WILD-TYPE" "AMP PEAK  7(6Q12) WILD-TYPE" 
                 TCGA-BR-7197                  TCGA-BR-7703 
  "AMP PEAK  7(6Q12) MUTATED" "AMP PEAK  7(6Q12) WILD-TYPE" 
                 TCGA-BR-7704                  TCGA-BR-7707 
  "AMP PEAK  7(6Q12) MUTATED" "AMP PEAK  7(6Q12) WILD-TYPE" 
                 TCGA-BR-7715                  TCGA-BR-7716 
  "AMP PEAK  7(6Q12) MUTATED" "AMP PEAK  7(6Q12) WILD-TYPE" 
                 TCGA-BR-7717                  TCGA-BR-7722 
"AMP PEAK  7(6Q12) WILD-TYPE" "AMP PEAK  7(6Q12) WILD-TYPE" 
                 TCGA-BR-7723                  TCGA-BR-7851 
  "AMP PEAK  7(6Q12) MUTATED" "AMP PEAK  7(6Q12) WILD-TYPE" 
                 TCGA-BR-7901                  TCGA-BR-7957 
"AMP PEAK  7(6Q12) WILD-TYPE" "AMP PEAK  7(6Q12) WILD-TYPE" 
                 TCGA-BR-7958                  TCGA-BR-7959 
"AMP PEAK  7(6Q12) WILD-TYPE" "AMP PEAK  7(6Q12) WILD-TYPE" 
                 TCGA-BR-8059                  TCGA-BR-8060 
"AMP PEAK  7(6Q12) WILD-TYPE" "AMP PEAK  7(6Q12) WILD-TYPE" 
                 TCGA-BR-8077                  TCGA-BR-8078 
"AMP PEAK  7(6Q12) WILD-TYPE" "AMP PEAK  7(6Q12) WILD-TYPE" 
                 TCGA-BR-8080                  TCGA-BR-8081 
"AMP PEAK  7(6Q12) WILD-TYPE" "AMP PEAK  7(6Q12) WILD-TYPE" 
                 TCGA-BR-8284                  TCGA-BR-8285 
"AMP PEAK  7(6Q12) WILD-TYPE" "AMP PEAK  7(6Q12) WILD-TYPE" 
                 TCGA-BR-8286                  TCGA-BR-8289 
"AMP PEAK  7(6Q12) WILD-TYPE" "AMP PEAK  7(6Q12) WILD-TYPE" 
                 TCGA-BR-8291                  TCGA-BR-8295 
"AMP PEAK  7(6Q12) WILD-TYPE" "AMP PEAK  7(6Q12) WILD-TYPE" 
                 TCGA-BR-8296                  TCGA-BR-8297 
"AMP PEAK  7(6Q12) WILD-TYPE" "AMP PEAK  7(6Q12) WILD-TYPE" 
                 TCGA-CD-5798                  TCGA-CD-5799 
"AMP PEAK  7(6Q12) WILD-TYPE"   "AMP PEAK  7(6Q12) MUTATED" 
                 TCGA-CD-5800                  TCGA-CD-5801 
"AMP PEAK  7(6Q12) WILD-TYPE" "AMP PEAK  7(6Q12) WILD-TYPE" 
                 TCGA-CD-5802                  TCGA-CD-5803 
"AMP PEAK  7(6Q12) WILD-TYPE" "AMP PEAK  7(6Q12) WILD-TYPE" 
                 TCGA-CG-4300                  TCGA-CG-4301 
"AMP PEAK  7(6Q12) WILD-TYPE" "AMP PEAK  7(6Q12) WILD-TYPE" 
                 TCGA-CG-4304                  TCGA-CG-4305 
"AMP PEAK  7(6Q12) WILD-TYPE" "AMP PEAK  7(6Q12) WILD-TYPE" 
                 TCGA-CG-4306                  TCGA-CG-4436 
"AMP PEAK  7(6Q12) WILD-TYPE"   "AMP PEAK  7(6Q12) MUTATED" 
                 TCGA-CG-4437                  TCGA-CG-4438 
"AMP PEAK  7(6Q12) WILD-TYPE"   "AMP PEAK  7(6Q12) MUTATED" 
                 TCGA-CG-4440                  TCGA-CG-4441 
  "AMP PEAK  7(6Q12) MUTATED" "AMP PEAK  7(6Q12) WILD-TYPE" 
                 TCGA-CG-4443                  TCGA-CG-4444 
"AMP PEAK  7(6Q12) WILD-TYPE" "AMP PEAK  7(6Q12) WILD-TYPE" 
                 TCGA-CG-4449                  TCGA-CG-4455 
"AMP PEAK  7(6Q12) WILD-TYPE" "AMP PEAK  7(6Q12) WILD-TYPE" 
                 TCGA-CG-4460                  TCGA-CG-4462 
"AMP PEAK  7(6Q12) WILD-TYPE" "AMP PEAK  7(6Q12) WILD-TYPE" 
                 TCGA-CG-4465                  TCGA-CG-4466 
"AMP PEAK  7(6Q12) WILD-TYPE"   "AMP PEAK  7(6Q12) MUTATED" 
                 TCGA-CG-4469                  TCGA-CG-4472 
"AMP PEAK  7(6Q12) WILD-TYPE" "AMP PEAK  7(6Q12) WILD-TYPE" 
                 TCGA-CG-4474                  TCGA-CG-4477 
"AMP PEAK  7(6Q12) WILD-TYPE" "AMP PEAK  7(6Q12) WILD-TYPE" 
                 TCGA-CG-5716                  TCGA-CG-5717 
"AMP PEAK  7(6Q12) WILD-TYPE" "AMP PEAK  7(6Q12) WILD-TYPE" 
                 TCGA-CG-5718                  TCGA-CG-5719 
"AMP PEAK  7(6Q12) WILD-TYPE"   "AMP PEAK  7(6Q12) MUTATED" 
                 TCGA-CG-5720                  TCGA-CG-5721 
"AMP PEAK  7(6Q12) WILD-TYPE" "AMP PEAK  7(6Q12) WILD-TYPE" 
                 TCGA-CG-5722                  TCGA-CG-5723 
"AMP PEAK  7(6Q12) WILD-TYPE" "AMP PEAK  7(6Q12) WILD-TYPE" 
                 TCGA-CG-5724                  TCGA-CG-5725 
"AMP PEAK  7(6Q12) WILD-TYPE" "AMP PEAK  7(6Q12) WILD-TYPE" 
                 TCGA-CG-5726                  TCGA-CG-5727 
"AMP PEAK  7(6Q12) WILD-TYPE" "AMP PEAK  7(6Q12) WILD-TYPE" 
                 TCGA-CG-5728                  TCGA-CG-5730 
"AMP PEAK  7(6Q12) WILD-TYPE"   "AMP PEAK  7(6Q12) MUTATED" 
                 TCGA-CG-5732                  TCGA-CG-5733 
"AMP PEAK  7(6Q12) WILD-TYPE" "AMP PEAK  7(6Q12) WILD-TYPE" 
                 TCGA-CG-5734                  TCGA-D7-5577 
"AMP PEAK  7(6Q12) WILD-TYPE" "AMP PEAK  7(6Q12) WILD-TYPE" 
                 TCGA-D7-5578                  TCGA-D7-5579 
"AMP PEAK  7(6Q12) WILD-TYPE" "AMP PEAK  7(6Q12) WILD-TYPE" 
                 TCGA-D7-6518                  TCGA-D7-6519 
"AMP PEAK  7(6Q12) WILD-TYPE" "AMP PEAK  7(6Q12) WILD-TYPE" 
                 TCGA-D7-6520                  TCGA-D7-6521 
"AMP PEAK  7(6Q12) WILD-TYPE" "AMP PEAK  7(6Q12) WILD-TYPE" 
                 TCGA-D7-6522                  TCGA-D7-6524 
"AMP PEAK  7(6Q12) WILD-TYPE" "AMP PEAK  7(6Q12) WILD-TYPE" 
                 TCGA-D7-6525                  TCGA-D7-6526 
"AMP PEAK  7(6Q12) WILD-TYPE"   "AMP PEAK  7(6Q12) MUTATED" 
                 TCGA-D7-6527                  TCGA-D7-6528 
  "AMP PEAK  7(6Q12) MUTATED" "AMP PEAK  7(6Q12) WILD-TYPE" 
                 TCGA-D7-6815                  TCGA-D7-6817 
"AMP PEAK  7(6Q12) WILD-TYPE" "AMP PEAK  7(6Q12) WILD-TYPE" 
                 TCGA-D7-6818                  TCGA-D7-6820 
  "AMP PEAK  7(6Q12) MUTATED"   "AMP PEAK  7(6Q12) MUTATED" 
                 TCGA-D7-6822                  TCGA-EQ-5647 
  "AMP PEAK  7(6Q12) MUTATED" "AMP PEAK  7(6Q12) WILD-TYPE" 
                 TCGA-EQ-8122                  TCGA-F1-6177 
"AMP PEAK  7(6Q12) WILD-TYPE" "AMP PEAK  7(6Q12) WILD-TYPE" 
                 TCGA-F1-6874                  TCGA-F1-6875 
"AMP PEAK  7(6Q12) WILD-TYPE" "AMP PEAK  7(6Q12) WILD-TYPE" 
                 TCGA-FP-7735                  TCGA-FP-7829 
  "AMP PEAK  7(6Q12) MUTATED"   "AMP PEAK  7(6Q12) MUTATED" 
                 TCGA-FP-7916                  TCGA-FP-7998 
"AMP PEAK  7(6Q12) WILD-TYPE" "AMP PEAK  7(6Q12) WILD-TYPE" 
                 TCGA-HJ-7597                  TCGA-IN-7806 
"AMP PEAK  7(6Q12) WILD-TYPE" "AMP PEAK  7(6Q12) WILD-TYPE" 
                 TCGA-IN-7808                  TCGA-IP-7968 
"AMP PEAK  7(6Q12) WILD-TYPE" "AMP PEAK  7(6Q12) WILD-TYPE" 
                 TCGA-B7-5816                  TCGA-B7-5818 
"AMP PEAK  7(6Q12) WILD-TYPE" "AMP PEAK  7(6Q12) WILD-TYPE" 
                 TCGA-BR-6452                  TCGA-BR-6455 
"AMP PEAK  7(6Q12) WILD-TYPE" "AMP PEAK  7(6Q12) WILD-TYPE" 
                 TCGA-BR-6457                  TCGA-BR-6458 
"AMP PEAK  7(6Q12) WILD-TYPE"   "AMP PEAK  7(6Q12) MUTATED" 
                 TCGA-BR-6563                  TCGA-BR-6564 
"AMP PEAK  7(6Q12) WILD-TYPE" "AMP PEAK  7(6Q12) WILD-TYPE" 
                 TCGA-BR-6565                  TCGA-BR-6566 
"AMP PEAK  7(6Q12) WILD-TYPE" "AMP PEAK  7(6Q12) WILD-TYPE" 
                 TCGA-BR-6705                  TCGA-BR-6706 
"AMP PEAK  7(6Q12) WILD-TYPE" "AMP PEAK  7(6Q12) WILD-TYPE" 
                 TCGA-BR-6707                  TCGA-BR-6709 
"AMP PEAK  7(6Q12) WILD-TYPE" "AMP PEAK  7(6Q12) WILD-TYPE" 
                 TCGA-BR-6710                  TCGA-BR-6801 
"AMP PEAK  7(6Q12) WILD-TYPE" "AMP PEAK  7(6Q12) WILD-TYPE" 
                 TCGA-BR-6802                  TCGA-BR-6803 
"AMP PEAK  7(6Q12) WILD-TYPE" "AMP PEAK  7(6Q12) WILD-TYPE" 
                 TCGA-BR-6852                  TCGA-BR-7196 
"AMP PEAK  7(6Q12) WILD-TYPE" "AMP PEAK  7(6Q12) WILD-TYPE" 
                 TCGA-BR-7197                  TCGA-BR-7703 
  "AMP PEAK  7(6Q12) MUTATED" "AMP PEAK  7(6Q12) WILD-TYPE" 
                 TCGA-BR-7704                  TCGA-BR-7707 
  "AMP PEAK  7(6Q12) MUTATED" "AMP PEAK  7(6Q12) WILD-TYPE" 
                 TCGA-BR-7715                  TCGA-BR-7716 
  "AMP PEAK  7(6Q12) MUTATED" "AMP PEAK  7(6Q12) WILD-TYPE" 
                 TCGA-BR-7717                  TCGA-BR-7722 
"AMP PEAK  7(6Q12) WILD-TYPE" "AMP PEAK  7(6Q12) WILD-TYPE" 
                 TCGA-BR-7723                  TCGA-BR-7851 
  "AMP PEAK  7(6Q12) MUTATED" "AMP PEAK  7(6Q12) WILD-TYPE" 
                 TCGA-BR-7901                  TCGA-BR-7957 
"AMP PEAK  7(6Q12) WILD-TYPE" "AMP PEAK  7(6Q12) WILD-TYPE" 
                 TCGA-BR-7958                  TCGA-BR-7959 
"AMP PEAK  7(6Q12) WILD-TYPE" "AMP PEAK  7(6Q12) WILD-TYPE" 
                 TCGA-BR-8059                  TCGA-BR-8060 
"AMP PEAK  7(6Q12) WILD-TYPE" "AMP PEAK  7(6Q12) WILD-TYPE" 
                 TCGA-BR-8077                  TCGA-BR-8078 
"AMP PEAK  7(6Q12) WILD-TYPE" "AMP PEAK  7(6Q12) WILD-TYPE" 
                 TCGA-BR-8080                  TCGA-BR-8081 
"AMP PEAK  7(6Q12) WILD-TYPE" "AMP PEAK  7(6Q12) WILD-TYPE" 
                 TCGA-BR-8284                  TCGA-BR-8285 
"AMP PEAK  7(6Q12) WILD-TYPE" "AMP PEAK  7(6Q12) WILD-TYPE" 
                 TCGA-BR-8286                  TCGA-BR-8289 
"AMP PEAK  7(6Q12) WILD-TYPE" "AMP PEAK  7(6Q12) WILD-TYPE" 
                 TCGA-BR-8291                  TCGA-BR-8295 
"AMP PEAK  7(6Q12) WILD-TYPE" "AMP PEAK  7(6Q12) WILD-TYPE" 
                 TCGA-BR-8296                  TCGA-BR-8297 
"AMP PEAK  7(6Q12) WILD-TYPE" "AMP PEAK  7(6Q12) WILD-TYPE" 
                 TCGA-CD-5798                  TCGA-CD-5799 
"AMP PEAK  7(6Q12) WILD-TYPE"   "AMP PEAK  7(6Q12) MUTATED" 
                 TCGA-CD-5800                  TCGA-CD-5801 
"AMP PEAK  7(6Q12) WILD-TYPE" "AMP PEAK  7(6Q12) WILD-TYPE" 
                 TCGA-CD-5802                  TCGA-CD-5803 
"AMP PEAK  7(6Q12) WILD-TYPE" "AMP PEAK  7(6Q12) WILD-TYPE" 
                 TCGA-CG-4300                  TCGA-CG-4301 
"AMP PEAK  7(6Q12) WILD-TYPE" "AMP PEAK  7(6Q12) WILD-TYPE" 
                 TCGA-CG-4304                  TCGA-CG-4305 
"AMP PEAK  7(6Q12) WILD-TYPE" "AMP PEAK  7(6Q12) WILD-TYPE" 
                 TCGA-CG-4306                  TCGA-CG-4436 
"AMP PEAK  7(6Q12) WILD-TYPE"   "AMP PEAK  7(6Q12) MUTATED" 
                 TCGA-CG-4437                  TCGA-CG-4438 
"AMP PEAK  7(6Q12) WILD-TYPE"   "AMP PEAK  7(6Q12) MUTATED" 
                 TCGA-CG-4440                  TCGA-CG-4441 
  "AMP PEAK  7(6Q12) MUTATED" "AMP PEAK  7(6Q12) WILD-TYPE" 
                 TCGA-CG-4443                  TCGA-CG-4444 
"AMP PEAK  7(6Q12) WILD-TYPE" "AMP PEAK  7(6Q12) WILD-TYPE" 
                 TCGA-CG-4449                  TCGA-CG-4455 
"AMP PEAK  7(6Q12) WILD-TYPE" "AMP PEAK  7(6Q12) WILD-TYPE" 
                 TCGA-CG-4460                  TCGA-CG-4462 
"AMP PEAK  7(6Q12) WILD-TYPE" "AMP PEAK  7(6Q12) WILD-TYPE" 
                 TCGA-CG-4465                  TCGA-CG-4466 
"AMP PEAK  7(6Q12) WILD-TYPE"   "AMP PEAK  7(6Q12) MUTATED" 
                 TCGA-CG-4469                  TCGA-CG-4472 
"AMP PEAK  7(6Q12) WILD-TYPE" "AMP PEAK  7(6Q12) WILD-TYPE" 
                 TCGA-CG-4474                  TCGA-CG-4477 
"AMP PEAK  7(6Q12) WILD-TYPE" "AMP PEAK  7(6Q12) WILD-TYPE" 
                 TCGA-CG-5716                  TCGA-CG-5717 
"AMP PEAK  7(6Q12) WILD-TYPE" "AMP PEAK  7(6Q12) WILD-TYPE" 
                 TCGA-CG-5718                  TCGA-CG-5719 
"AMP PEAK  7(6Q12) WILD-TYPE"   "AMP PEAK  7(6Q12) MUTATED" 
                 TCGA-CG-5720                  TCGA-CG-5721 
"AMP PEAK  7(6Q12) WILD-TYPE" "AMP PEAK  7(6Q12) WILD-TYPE" 
                 TCGA-CG-5722                  TCGA-CG-5723 
"AMP PEAK  7(6Q12) WILD-TYPE" "AMP PEAK  7(6Q12) WILD-TYPE" 
                 TCGA-CG-5724                  TCGA-CG-5725 
"AMP PEAK  7(6Q12) WILD-TYPE" "AMP PEAK  7(6Q12) WILD-TYPE" 
                 TCGA-CG-5726                  TCGA-CG-5727 
"AMP PEAK  7(6Q12) WILD-TYPE" "AMP PEAK  7(6Q12) WILD-TYPE" 
                 TCGA-CG-5728                  TCGA-CG-5730 
"AMP PEAK  7(6Q12) WILD-TYPE"   "AMP PEAK  7(6Q12) MUTATED" 
                 TCGA-CG-5732                  TCGA-CG-5733 
"AMP PEAK  7(6Q12) WILD-TYPE" "AMP PEAK  7(6Q12) WILD-TYPE" 
                 TCGA-CG-5734                  TCGA-D7-5577 
"AMP PEAK  7(6Q12) WILD-TYPE" "AMP PEAK  7(6Q12) WILD-TYPE" 
                 TCGA-D7-5578                  TCGA-D7-5579 
"AMP PEAK  7(6Q12) WILD-TYPE" "AMP PEAK  7(6Q12) WILD-TYPE" 
                 TCGA-D7-6518                  TCGA-D7-6519 
"AMP PEAK  7(6Q12) WILD-TYPE" "AMP PEAK  7(6Q12) WILD-TYPE" 
                 TCGA-D7-6520                  TCGA-D7-6521 
"AMP PEAK  7(6Q12) WILD-TYPE" "AMP PEAK  7(6Q12) WILD-TYPE" 
                 TCGA-D7-6522                  TCGA-D7-6524 
"AMP PEAK  7(6Q12) WILD-TYPE" "AMP PEAK  7(6Q12) WILD-TYPE" 
                 TCGA-D7-6525                  TCGA-D7-6526 
"AMP PEAK  7(6Q12) WILD-TYPE"   "AMP PEAK  7(6Q12) MUTATED" 
                 TCGA-D7-6527                  TCGA-D7-6528 
  "AMP PEAK  7(6Q12) MUTATED" "AMP PEAK  7(6Q12) WILD-TYPE" 
                 TCGA-D7-6815                  TCGA-D7-6817 
"AMP PEAK  7(6Q12) WILD-TYPE" "AMP PEAK  7(6Q12) WILD-TYPE" 
                 TCGA-D7-6818                  TCGA-D7-6820 
  "AMP PEAK  7(6Q12) MUTATED"   "AMP PEAK  7(6Q12) MUTATED" 
                 TCGA-D7-6822                  TCGA-EQ-5647 
  "AMP PEAK  7(6Q12) MUTATED" "AMP PEAK  7(6Q12) WILD-TYPE" 
                 TCGA-EQ-8122                  TCGA-F1-6177 
"AMP PEAK  7(6Q12) WILD-TYPE" "AMP PEAK  7(6Q12) WILD-TYPE" 
                 TCGA-F1-6874                  TCGA-F1-6875 
"AMP PEAK  7(6Q12) WILD-TYPE" "AMP PEAK  7(6Q12) WILD-TYPE" 
                 TCGA-FP-7735                  TCGA-FP-7829 
  "AMP PEAK  7(6Q12) MUTATED"   "AMP PEAK  7(6Q12) MUTATED" 
                 TCGA-FP-7916                  TCGA-FP-7998 
"AMP PEAK  7(6Q12) WILD-TYPE" "AMP PEAK  7(6Q12) WILD-TYPE" 
                 TCGA-HJ-7597                  TCGA-IN-7806 
"AMP PEAK  7(6Q12) WILD-TYPE" "AMP PEAK  7(6Q12) WILD-TYPE" 
                 TCGA-IN-7808                  TCGA-IP-7968 
"AMP PEAK  7(6Q12) WILD-TYPE" "AMP PEAK  7(6Q12) WILD-TYPE" 
                 TCGA-B7-5816                  TCGA-B7-5818 
"AMP PEAK  7(6Q12) WILD-TYPE" "AMP PEAK  7(6Q12) WILD-TYPE" 
                 TCGA-BR-6452                  TCGA-BR-6455 
"AMP PEAK  7(6Q12) WILD-TYPE" "AMP PEAK  7(6Q12) WILD-TYPE" 
                 TCGA-BR-6457                  TCGA-BR-6458 
"AMP PEAK  7(6Q12) WILD-TYPE"   "AMP PEAK  7(6Q12) MUTATED" 
                 TCGA-BR-6563                  TCGA-BR-6564 
"AMP PEAK  7(6Q12) WILD-TYPE" "AMP PEAK  7(6Q12) WILD-TYPE" 
                 TCGA-BR-6565                  TCGA-BR-6566 
"AMP PEAK  7(6Q12) WILD-TYPE" "AMP PEAK  7(6Q12) WILD-TYPE" 
                 TCGA-BR-6705                  TCGA-BR-6706 
"AMP PEAK  7(6Q12) WILD-TYPE" "AMP PEAK  7(6Q12) WILD-TYPE" 
                 TCGA-BR-6707                  TCGA-BR-6709 
"AMP PEAK  7(6Q12) WILD-TYPE" "AMP PEAK  7(6Q12) WILD-TYPE" 
                 TCGA-BR-6710                  TCGA-BR-6801 
"AMP PEAK  7(6Q12) WILD-TYPE" "AMP PEAK  7(6Q12) WILD-TYPE" 
                 TCGA-BR-6802                  TCGA-BR-6803 
"AMP PEAK  7(6Q12) WILD-TYPE" "AMP PEAK  7(6Q12) WILD-TYPE" 
                 TCGA-BR-6852                  TCGA-BR-7196 
"AMP PEAK  7(6Q12) WILD-TYPE" "AMP PEAK  7(6Q12) WILD-TYPE" 
                 TCGA-BR-7197                  TCGA-BR-7703 
  "AMP PEAK  7(6Q12) MUTATED" "AMP PEAK  7(6Q12) WILD-TYPE" 
                 TCGA-BR-7704                  TCGA-BR-7707 
  "AMP PEAK  7(6Q12) MUTATED" "AMP PEAK  7(6Q12) WILD-TYPE" 
                 TCGA-BR-7715                  TCGA-BR-7716 
  "AMP PEAK  7(6Q12) MUTATED" "AMP PEAK  7(6Q12) WILD-TYPE" 
                 TCGA-BR-7717                  TCGA-BR-7722 
"AMP PEAK  7(6Q12) WILD-TYPE" "AMP PEAK  7(6Q12) WILD-TYPE" 
                 TCGA-BR-7723                  TCGA-BR-7851 
  "AMP PEAK  7(6Q12) MUTATED" "AMP PEAK  7(6Q12) WILD-TYPE" 
                 TCGA-BR-7901                  TCGA-BR-7957 
"AMP PEAK  7(6Q12) WILD-TYPE" "AMP PEAK  7(6Q12) WILD-TYPE" 
                 TCGA-BR-7958                  TCGA-BR-7959 
"AMP PEAK  7(6Q12) WILD-TYPE" "AMP PEAK  7(6Q12) WILD-TYPE" 
                 TCGA-BR-8059                  TCGA-BR-8060 
"AMP PEAK  7(6Q12) WILD-TYPE" "AMP PEAK  7(6Q12) WILD-TYPE" 
                 TCGA-BR-8077                  TCGA-BR-8078 
"AMP PEAK  7(6Q12) WILD-TYPE" "AMP PEAK  7(6Q12) WILD-TYPE" 
                 TCGA-BR-8080                  TCGA-BR-8081 
"AMP PEAK  7(6Q12) WILD-TYPE" "AMP PEAK  7(6Q12) WILD-TYPE" 
                 TCGA-BR-8284                  TCGA-BR-8285 
"AMP PEAK  7(6Q12) WILD-TYPE" "AMP PEAK  7(6Q12) WILD-TYPE" 
                 TCGA-BR-8286                  TCGA-BR-8289 
"AMP PEAK  7(6Q12) WILD-TYPE" "AMP PEAK  7(6Q12) WILD-TYPE" 
                 TCGA-BR-8291                  TCGA-BR-8295 
"AMP PEAK  7(6Q12) WILD-TYPE" "AMP PEAK  7(6Q12) WILD-TYPE" 
                 TCGA-BR-8296                  TCGA-BR-8297 
"AMP PEAK  7(6Q12) WILD-TYPE" "AMP PEAK  7(6Q12) WILD-TYPE" 
                 TCGA-CD-5798                  TCGA-CD-5799 
"AMP PEAK  7(6Q12) WILD-TYPE"   "AMP PEAK  7(6Q12) MUTATED" 
                 TCGA-CD-5800                  TCGA-CD-5801 
"AMP PEAK  7(6Q12) WILD-TYPE" "AMP PEAK  7(6Q12) WILD-TYPE" 
                 TCGA-CD-5802                  TCGA-CD-5803 
"AMP PEAK  7(6Q12) WILD-TYPE" "AMP PEAK  7(6Q12) WILD-TYPE" 
                 TCGA-CG-4300                  TCGA-CG-4301 
"AMP PEAK  7(6Q12) WILD-TYPE" "AMP PEAK  7(6Q12) WILD-TYPE" 
                 TCGA-CG-4304                  TCGA-CG-4305 
"AMP PEAK  7(6Q12) WILD-TYPE" "AMP PEAK  7(6Q12) WILD-TYPE" 
                 TCGA-CG-4306                  TCGA-CG-4436 
"AMP PEAK  7(6Q12) WILD-TYPE"   "AMP PEAK  7(6Q12) MUTATED" 
                 TCGA-CG-4437                  TCGA-CG-4438 
"AMP PEAK  7(6Q12) WILD-TYPE"   "AMP PEAK  7(6Q12) MUTATED" 
                 TCGA-CG-4440                  TCGA-CG-4441 
  "AMP PEAK  7(6Q12) MUTATED" "AMP PEAK  7(6Q12) WILD-TYPE" 
                 TCGA-CG-4443                  TCGA-CG-4444 
"AMP PEAK  7(6Q12) WILD-TYPE" "AMP PEAK  7(6Q12) WILD-TYPE" 
                 TCGA-CG-4449                  TCGA-CG-4455 
"AMP PEAK  7(6Q12) WILD-TYPE" "AMP PEAK  7(6Q12) WILD-TYPE" 
                 TCGA-CG-4460                  TCGA-CG-4462 
"AMP PEAK  7(6Q12) WILD-TYPE" "AMP PEAK  7(6Q12) WILD-TYPE" 
                 TCGA-CG-4465                  TCGA-CG-4466 
"AMP PEAK  7(6Q12) WILD-TYPE"   "AMP PEAK  7(6Q12) MUTATED" 
                 TCGA-CG-4469                  TCGA-CG-4472 
"AMP PEAK  7(6Q12) WILD-TYPE" "AMP PEAK  7(6Q12) WILD-TYPE" 
                 TCGA-CG-4474                  TCGA-CG-4477 
"AMP PEAK  7(6Q12) WILD-TYPE" "AMP PEAK  7(6Q12) WILD-TYPE" 
                 TCGA-CG-5716                  TCGA-CG-5717 
"AMP PEAK  7(6Q12) WILD-TYPE" "AMP PEAK  7(6Q12) WILD-TYPE" 
                 TCGA-CG-5718                  TCGA-CG-5719 
"AMP PEAK  7(6Q12) WILD-TYPE"   "AMP PEAK  7(6Q12) MUTATED" 
                 TCGA-CG-5720                  TCGA-CG-5721 
"AMP PEAK  7(6Q12) WILD-TYPE" "AMP PEAK  7(6Q12) WILD-TYPE" 
                 TCGA-CG-5722                  TCGA-CG-5723 
"AMP PEAK  7(6Q12) WILD-TYPE" "AMP PEAK  7(6Q12) WILD-TYPE" 
                 TCGA-CG-5724                  TCGA-CG-5725 
"AMP PEAK  7(6Q12) WILD-TYPE" "AMP PEAK  7(6Q12) WILD-TYPE" 
                 TCGA-CG-5726                  TCGA-CG-5727 
"AMP PEAK  7(6Q12) WILD-TYPE" "AMP PEAK  7(6Q12) WILD-TYPE" 
                 TCGA-CG-5728                  TCGA-CG-5730 
"AMP PEAK  7(6Q12) WILD-TYPE"   "AMP PEAK  7(6Q12) MUTATED" 
                 TCGA-CG-5732                  TCGA-CG-5733 
"AMP PEAK  7(6Q12) WILD-TYPE" "AMP PEAK  7(6Q12) WILD-TYPE" 
                 TCGA-CG-5734                  TCGA-D7-5577 
"AMP PEAK  7(6Q12) WILD-TYPE" "AMP PEAK  7(6Q12) WILD-TYPE" 
                 TCGA-D7-5578                  TCGA-D7-5579 
"AMP PEAK  7(6Q12) WILD-TYPE" "AMP PEAK  7(6Q12) WILD-TYPE" 
                 TCGA-D7-6518                  TCGA-D7-6519 
"AMP PEAK  7(6Q12) WILD-TYPE" "AMP PEAK  7(6Q12) WILD-TYPE" 
                 TCGA-D7-6520                  TCGA-D7-6521 
"AMP PEAK  7(6Q12) WILD-TYPE" "AMP PEAK  7(6Q12) WILD-TYPE" 
                 TCGA-D7-6522                  TCGA-D7-6524 
"AMP PEAK  7(6Q12) WILD-TYPE" "AMP PEAK  7(6Q12) WILD-TYPE" 
                 TCGA-D7-6525                  TCGA-D7-6526 
"AMP PEAK  7(6Q12) WILD-TYPE"   "AMP PEAK  7(6Q12) MUTATED" 
                 TCGA-D7-6527                  TCGA-D7-6528 
  "AMP PEAK  7(6Q12) MUTATED" "AMP PEAK  7(6Q12) WILD-TYPE" 
                 TCGA-D7-6815                  TCGA-D7-6817 
"AMP PEAK  7(6Q12) WILD-TYPE" "AMP PEAK  7(6Q12) WILD-TYPE" 
                 TCGA-D7-6818                  TCGA-D7-6820 
  "AMP PEAK  7(6Q12) MUTATED"   "AMP PEAK  7(6Q12) MUTATED" 
                 TCGA-D7-6822                  TCGA-EQ-5647 
  "AMP PEAK  7(6Q12) MUTATED" "AMP PEAK  7(6Q12) WILD-TYPE" 
                 TCGA-EQ-8122                  TCGA-F1-6177 
"AMP PEAK  7(6Q12) WILD-TYPE" "AMP PEAK  7(6Q12) WILD-TYPE" 
                 TCGA-F1-6874                  TCGA-F1-6875 
"AMP PEAK  7(6Q12) WILD-TYPE" "AMP PEAK  7(6Q12) WILD-TYPE" 
                 TCGA-FP-7735                  TCGA-FP-7829 
  "AMP PEAK  7(6Q12) MUTATED"   "AMP PEAK  7(6Q12) MUTATED" 
                 TCGA-FP-7916                  TCGA-FP-7998 
"AMP PEAK  7(6Q12) WILD-TYPE" "AMP PEAK  7(6Q12) WILD-TYPE" 
                 TCGA-HJ-7597                  TCGA-IN-7806 
"AMP PEAK  7(6Q12) WILD-TYPE" "AMP PEAK  7(6Q12) WILD-TYPE" 
                 TCGA-IN-7808                  TCGA-IP-7968 
"AMP PEAK  7(6Q12) WILD-TYPE" "AMP PEAK  7(6Q12) WILD-TYPE" 
[1] "hr=" "2.4"
D7V2, continuous
D7V3, binary
[1] "tbl2"
                             cls
clus                          [,1] [,2]
  AMP PEAK  7(6Q12) MUTATED     13   20
  AMP PEAK  7(6Q12) WILD-TYPE   52   76
        clus
vv       AMP PEAK  7(6Q12) MUTATED AMP PEAK  7(6Q12) WILD-TYPE
  FEMALE                        13                          52
  MALE                          20                          76
D7V4, multiclass
D7V5, multiclass
    clus
vv   AMP PEAK  7(6Q12) MUTATED AMP PEAK  7(6Q12) WILD-TYPE
  T1                         1                           5
  T2                        10                          43
  T3                        15                          44
  T4                         4                          29
D7V6, multiclass
    clus
vv   AMP PEAK  7(6Q12) MUTATED AMP PEAK  7(6Q12) WILD-TYPE
  N0                        10                          40
  N1                        13                          44
  N2                         4                          20
  N3                         3                          16
D7V7, multiclass
    clus
vv   AMP PEAK  7(6Q12) MUTATED AMP PEAK  7(6Q12) WILD-TYPE
  M0                        27                         105
  M1                         3                          15
  MX                         3                           8
D7V8, multiclass
     clus
vv    AMP PEAK  7(6Q12) MUTATED AMP PEAK  7(6Q12) WILD-TYPE
  I                           6                          19
  II                          9                          34
  III                         8                          40
  IV                          6                          23
D7V9, binary
[1] "tbl2"
                             cls
clus                          [,1] [,2]
  AMP PEAK  7(6Q12) MUTATED     31    2
  AMP PEAK  7(6Q12) WILD-TYPE  125    3
     clus
vv    AMP PEAK  7(6Q12) MUTATED AMP PEAK  7(6Q12) WILD-TYPE
  NO                          2                           3
  YES                        31                         125

Clustering(8) Variable = Amp Peak  8(7p11.2) mutation analysis
D8V1, survival
                   TCGA-B7-5816                    TCGA-B7-5818 
"AMP PEAK  8(7P11.2) WILD-TYPE"   "AMP PEAK  8(7P11.2) MUTATED" 
                   TCGA-BR-6452                    TCGA-BR-6455 
"AMP PEAK  8(7P11.2) WILD-TYPE" "AMP PEAK  8(7P11.2) WILD-TYPE" 
                   TCGA-BR-6457                    TCGA-BR-6458 
"AMP PEAK  8(7P11.2) WILD-TYPE"   "AMP PEAK  8(7P11.2) MUTATED" 
                   TCGA-BR-6563                    TCGA-BR-6564 
"AMP PEAK  8(7P11.2) WILD-TYPE" "AMP PEAK  8(7P11.2) WILD-TYPE" 
                   TCGA-BR-6565                    TCGA-BR-6566 
  "AMP PEAK  8(7P11.2) MUTATED"   "AMP PEAK  8(7P11.2) MUTATED" 
                   TCGA-BR-6705                    TCGA-BR-6706 
  "AMP PEAK  8(7P11.2) MUTATED"   "AMP PEAK  8(7P11.2) MUTATED" 
                   TCGA-BR-6707                    TCGA-BR-6709 
"AMP PEAK  8(7P11.2) WILD-TYPE" "AMP PEAK  8(7P11.2) WILD-TYPE" 
                   TCGA-BR-6710                    TCGA-BR-6801 
"AMP PEAK  8(7P11.2) WILD-TYPE"   "AMP PEAK  8(7P11.2) MUTATED" 
                   TCGA-BR-6802                    TCGA-BR-6803 
"AMP PEAK  8(7P11.2) WILD-TYPE" "AMP PEAK  8(7P11.2) WILD-TYPE" 
                   TCGA-BR-6852                    TCGA-BR-7196 
"AMP PEAK  8(7P11.2) WILD-TYPE" "AMP PEAK  8(7P11.2) WILD-TYPE" 
                   TCGA-BR-7197                    TCGA-BR-7703 
  "AMP PEAK  8(7P11.2) MUTATED"   "AMP PEAK  8(7P11.2) MUTATED" 
                   TCGA-BR-7704                    TCGA-BR-7707 
  "AMP PEAK  8(7P11.2) MUTATED" "AMP PEAK  8(7P11.2) WILD-TYPE" 
                   TCGA-BR-7715                    TCGA-BR-7716 
  "AMP PEAK  8(7P11.2) MUTATED" "AMP PEAK  8(7P11.2) WILD-TYPE" 
                   TCGA-BR-7717                    TCGA-BR-7722 
  "AMP PEAK  8(7P11.2) MUTATED" "AMP PEAK  8(7P11.2) WILD-TYPE" 
                   TCGA-BR-7723                    TCGA-BR-7851 
"AMP PEAK  8(7P11.2) WILD-TYPE" "AMP PEAK  8(7P11.2) WILD-TYPE" 
                   TCGA-BR-7901                    TCGA-BR-7957 
  "AMP PEAK  8(7P11.2) MUTATED" "AMP PEAK  8(7P11.2) WILD-TYPE" 
                   TCGA-BR-7958                    TCGA-BR-7959 
"AMP PEAK  8(7P11.2) WILD-TYPE" "AMP PEAK  8(7P11.2) WILD-TYPE" 
                   TCGA-BR-8059                    TCGA-BR-8060 
"AMP PEAK  8(7P11.2) WILD-TYPE" "AMP PEAK  8(7P11.2) WILD-TYPE" 
                   TCGA-BR-8077                    TCGA-BR-8078 
"AMP PEAK  8(7P11.2) WILD-TYPE" "AMP PEAK  8(7P11.2) WILD-TYPE" 
                   TCGA-BR-8080                    TCGA-BR-8081 
"AMP PEAK  8(7P11.2) WILD-TYPE" "AMP PEAK  8(7P11.2) WILD-TYPE" 
                   TCGA-BR-8284                    TCGA-BR-8285 
"AMP PEAK  8(7P11.2) WILD-TYPE" "AMP PEAK  8(7P11.2) WILD-TYPE" 
                   TCGA-BR-8286                    TCGA-BR-8289 
"AMP PEAK  8(7P11.2) WILD-TYPE" "AMP PEAK  8(7P11.2) WILD-TYPE" 
                   TCGA-BR-8291                    TCGA-BR-8295 
"AMP PEAK  8(7P11.2) WILD-TYPE" "AMP PEAK  8(7P11.2) WILD-TYPE" 
                   TCGA-BR-8296                    TCGA-BR-8297 
"AMP PEAK  8(7P11.2) WILD-TYPE" "AMP PEAK  8(7P11.2) WILD-TYPE" 
                   TCGA-CD-5798                    TCGA-CD-5799 
"AMP PEAK  8(7P11.2) WILD-TYPE"   "AMP PEAK  8(7P11.2) MUTATED" 
                   TCGA-CD-5800                    TCGA-CD-5801 
"AMP PEAK  8(7P11.2) WILD-TYPE"   "AMP PEAK  8(7P11.2) MUTATED" 
                   TCGA-CD-5802                    TCGA-CD-5803 
"AMP PEAK  8(7P11.2) WILD-TYPE" "AMP PEAK  8(7P11.2) WILD-TYPE" 
                   TCGA-CG-4300                    TCGA-CG-4301 
  "AMP PEAK  8(7P11.2) MUTATED" "AMP PEAK  8(7P11.2) WILD-TYPE" 
                   TCGA-CG-4304                    TCGA-CG-4305 
  "AMP PEAK  8(7P11.2) MUTATED"   "AMP PEAK  8(7P11.2) MUTATED" 
                   TCGA-CG-4306                    TCGA-CG-4436 
"AMP PEAK  8(7P11.2) WILD-TYPE"   "AMP PEAK  8(7P11.2) MUTATED" 
                   TCGA-CG-4437                    TCGA-CG-4438 
"AMP PEAK  8(7P11.2) WILD-TYPE" "AMP PEAK  8(7P11.2) WILD-TYPE" 
                   TCGA-CG-4440                    TCGA-CG-4441 
  "AMP PEAK  8(7P11.2) MUTATED" "AMP PEAK  8(7P11.2) WILD-TYPE" 
                   TCGA-CG-4443                    TCGA-CG-4444 
"AMP PEAK  8(7P11.2) WILD-TYPE" "AMP PEAK  8(7P11.2) WILD-TYPE" 
                   TCGA-CG-4449                    TCGA-CG-4455 
"AMP PEAK  8(7P11.2) WILD-TYPE" "AMP PEAK  8(7P11.2) WILD-TYPE" 
                   TCGA-CG-4460                    TCGA-CG-4462 
  "AMP PEAK  8(7P11.2) MUTATED" "AMP PEAK  8(7P11.2) WILD-TYPE" 
                   TCGA-CG-4465                    TCGA-CG-4466 
"AMP PEAK  8(7P11.2) WILD-TYPE"   "AMP PEAK  8(7P11.2) MUTATED" 
                   TCGA-CG-4469                    TCGA-CG-4472 
  "AMP PEAK  8(7P11.2) MUTATED"   "AMP PEAK  8(7P11.2) MUTATED" 
                   TCGA-CG-4474                    TCGA-CG-4477 
  "AMP PEAK  8(7P11.2) MUTATED" "AMP PEAK  8(7P11.2) WILD-TYPE" 
                   TCGA-CG-5716                    TCGA-CG-5717 
"AMP PEAK  8(7P11.2) WILD-TYPE" "AMP PEAK  8(7P11.2) WILD-TYPE" 
                   TCGA-CG-5718                    TCGA-CG-5719 
  "AMP PEAK  8(7P11.2) MUTATED" "AMP PEAK  8(7P11.2) WILD-TYPE" 
                   TCGA-CG-5720                    TCGA-CG-5721 
"AMP PEAK  8(7P11.2) WILD-TYPE" "AMP PEAK  8(7P11.2) WILD-TYPE" 
                   TCGA-CG-5722                    TCGA-CG-5723 
"AMP PEAK  8(7P11.2) WILD-TYPE" "AMP PEAK  8(7P11.2) WILD-TYPE" 
                   TCGA-CG-5724                    TCGA-CG-5725 
  "AMP PEAK  8(7P11.2) MUTATED" "AMP PEAK  8(7P11.2) WILD-TYPE" 
                   TCGA-CG-5726                    TCGA-CG-5727 
  "AMP PEAK  8(7P11.2) MUTATED"   "AMP PEAK  8(7P11.2) MUTATED" 
                   TCGA-CG-5728                    TCGA-CG-5730 
"AMP PEAK  8(7P11.2) WILD-TYPE" "AMP PEAK  8(7P11.2) WILD-TYPE" 
                   TCGA-CG-5732                    TCGA-CG-5733 
"AMP PEAK  8(7P11.2) WILD-TYPE"   "AMP PEAK  8(7P11.2) MUTATED" 
                   TCGA-CG-5734                    TCGA-D7-5577 
  "AMP PEAK  8(7P11.2) MUTATED" "AMP PEAK  8(7P11.2) WILD-TYPE" 
                   TCGA-D7-5578                    TCGA-D7-5579 
  "AMP PEAK  8(7P11.2) MUTATED"   "AMP PEAK  8(7P11.2) MUTATED" 
                   TCGA-D7-6518                    TCGA-D7-6519 
  "AMP PEAK  8(7P11.2) MUTATED" "AMP PEAK  8(7P11.2) WILD-TYPE" 
                   TCGA-D7-6520                    TCGA-D7-6521 
  "AMP PEAK  8(7P11.2) MUTATED"   "AMP PEAK  8(7P11.2) MUTATED" 
                   TCGA-D7-6522                    TCGA-D7-6524 
"AMP PEAK  8(7P11.2) WILD-TYPE" "AMP PEAK  8(7P11.2) WILD-TYPE" 
                   TCGA-D7-6525                    TCGA-D7-6526 
"AMP PEAK  8(7P11.2) WILD-TYPE"   "AMP PEAK  8(7P11.2) MUTATED" 
                   TCGA-D7-6527                    TCGA-D7-6528 
"AMP PEAK  8(7P11.2) WILD-TYPE"   "AMP PEAK  8(7P11.2) MUTATED" 
                   TCGA-D7-6815                    TCGA-D7-6817 
  "AMP PEAK  8(7P11.2) MUTATED" "AMP PEAK  8(7P11.2) WILD-TYPE" 
                   TCGA-D7-6818                    TCGA-D7-6820 
"AMP PEAK  8(7P11.2) WILD-TYPE"   "AMP PEAK  8(7P11.2) MUTATED" 
                   TCGA-D7-6822                    TCGA-EQ-5647 
  "AMP PEAK  8(7P11.2) MUTATED" "AMP PEAK  8(7P11.2) WILD-TYPE" 
                   TCGA-EQ-8122                    TCGA-F1-6177 
  "AMP PEAK  8(7P11.2) MUTATED"   "AMP PEAK  8(7P11.2) MUTATED" 
                   TCGA-F1-6874                    TCGA-F1-6875 
  "AMP PEAK  8(7P11.2) MUTATED"   "AMP PEAK  8(7P11.2) MUTATED" 
                   TCGA-FP-7735                    TCGA-FP-7829 
  "AMP PEAK  8(7P11.2) MUTATED"   "AMP PEAK  8(7P11.2) MUTATED" 
                   TCGA-FP-7916                    TCGA-FP-7998 
  "AMP PEAK  8(7P11.2) MUTATED" "AMP PEAK  8(7P11.2) WILD-TYPE" 
                   TCGA-HJ-7597                    TCGA-IN-7806 
  "AMP PEAK  8(7P11.2) MUTATED" "AMP PEAK  8(7P11.2) WILD-TYPE" 
                   TCGA-IN-7808                    TCGA-IP-7968 
  "AMP PEAK  8(7P11.2) MUTATED" "AMP PEAK  8(7P11.2) WILD-TYPE" 
                   TCGA-B7-5816                    TCGA-B7-5818 
"AMP PEAK  8(7P11.2) WILD-TYPE"   "AMP PEAK  8(7P11.2) MUTATED" 
                   TCGA-BR-6452                    TCGA-BR-6455 
"AMP PEAK  8(7P11.2) WILD-TYPE" "AMP PEAK  8(7P11.2) WILD-TYPE" 
                   TCGA-BR-6457                    TCGA-BR-6458 
"AMP PEAK  8(7P11.2) WILD-TYPE"   "AMP PEAK  8(7P11.2) MUTATED" 
                   TCGA-BR-6563                    TCGA-BR-6564 
"AMP PEAK  8(7P11.2) WILD-TYPE" "AMP PEAK  8(7P11.2) WILD-TYPE" 
                   TCGA-BR-6565                    TCGA-BR-6566 
  "AMP PEAK  8(7P11.2) MUTATED"   "AMP PEAK  8(7P11.2) MUTATED" 
                   TCGA-BR-6705                    TCGA-BR-6706 
  "AMP PEAK  8(7P11.2) MUTATED"   "AMP PEAK  8(7P11.2) MUTATED" 
                   TCGA-BR-6707                    TCGA-BR-6709 
"AMP PEAK  8(7P11.2) WILD-TYPE" "AMP PEAK  8(7P11.2) WILD-TYPE" 
                   TCGA-BR-6710                    TCGA-BR-6801 
"AMP PEAK  8(7P11.2) WILD-TYPE"   "AMP PEAK  8(7P11.2) MUTATED" 
                   TCGA-BR-6802                    TCGA-BR-6803 
"AMP PEAK  8(7P11.2) WILD-TYPE" "AMP PEAK  8(7P11.2) WILD-TYPE" 
                   TCGA-BR-6852                    TCGA-BR-7196 
"AMP PEAK  8(7P11.2) WILD-TYPE" "AMP PEAK  8(7P11.2) WILD-TYPE" 
                   TCGA-BR-7197                    TCGA-BR-7703 
  "AMP PEAK  8(7P11.2) MUTATED"   "AMP PEAK  8(7P11.2) MUTATED" 
                   TCGA-BR-7704                    TCGA-BR-7707 
  "AMP PEAK  8(7P11.2) MUTATED" "AMP PEAK  8(7P11.2) WILD-TYPE" 
                   TCGA-BR-7715                    TCGA-BR-7716 
  "AMP PEAK  8(7P11.2) MUTATED" "AMP PEAK  8(7P11.2) WILD-TYPE" 
                   TCGA-BR-7717                    TCGA-BR-7722 
  "AMP PEAK  8(7P11.2) MUTATED" "AMP PEAK  8(7P11.2) WILD-TYPE" 
                   TCGA-BR-7723                    TCGA-BR-7851 
"AMP PEAK  8(7P11.2) WILD-TYPE" "AMP PEAK  8(7P11.2) WILD-TYPE" 
                   TCGA-BR-7901                    TCGA-BR-7957 
  "AMP PEAK  8(7P11.2) MUTATED" "AMP PEAK  8(7P11.2) WILD-TYPE" 
                   TCGA-BR-7958                    TCGA-BR-7959 
"AMP PEAK  8(7P11.2) WILD-TYPE" "AMP PEAK  8(7P11.2) WILD-TYPE" 
                   TCGA-BR-8059                    TCGA-BR-8060 
"AMP PEAK  8(7P11.2) WILD-TYPE" "AMP PEAK  8(7P11.2) WILD-TYPE" 
                   TCGA-BR-8077                    TCGA-BR-8078 
"AMP PEAK  8(7P11.2) WILD-TYPE" "AMP PEAK  8(7P11.2) WILD-TYPE" 
                   TCGA-BR-8080                    TCGA-BR-8081 
"AMP PEAK  8(7P11.2) WILD-TYPE" "AMP PEAK  8(7P11.2) WILD-TYPE" 
                   TCGA-BR-8284                    TCGA-BR-8285 
"AMP PEAK  8(7P11.2) WILD-TYPE" "AMP PEAK  8(7P11.2) WILD-TYPE" 
                   TCGA-BR-8286                    TCGA-BR-8289 
"AMP PEAK  8(7P11.2) WILD-TYPE" "AMP PEAK  8(7P11.2) WILD-TYPE" 
                   TCGA-BR-8291                    TCGA-BR-8295 
"AMP PEAK  8(7P11.2) WILD-TYPE" "AMP PEAK  8(7P11.2) WILD-TYPE" 
                   TCGA-BR-8296                    TCGA-BR-8297 
"AMP PEAK  8(7P11.2) WILD-TYPE" "AMP PEAK  8(7P11.2) WILD-TYPE" 
                   TCGA-CD-5798                    TCGA-CD-5799 
"AMP PEAK  8(7P11.2) WILD-TYPE"   "AMP PEAK  8(7P11.2) MUTATED" 
                   TCGA-CD-5800                    TCGA-CD-5801 
"AMP PEAK  8(7P11.2) WILD-TYPE"   "AMP PEAK  8(7P11.2) MUTATED" 
                   TCGA-CD-5802                    TCGA-CD-5803 
"AMP PEAK  8(7P11.2) WILD-TYPE" "AMP PEAK  8(7P11.2) WILD-TYPE" 
                   TCGA-CG-4300                    TCGA-CG-4301 
  "AMP PEAK  8(7P11.2) MUTATED" "AMP PEAK  8(7P11.2) WILD-TYPE" 
                   TCGA-CG-4304                    TCGA-CG-4305 
  "AMP PEAK  8(7P11.2) MUTATED"   "AMP PEAK  8(7P11.2) MUTATED" 
                   TCGA-CG-4306                    TCGA-CG-4436 
"AMP PEAK  8(7P11.2) WILD-TYPE"   "AMP PEAK  8(7P11.2) MUTATED" 
                   TCGA-CG-4437                    TCGA-CG-4438 
"AMP PEAK  8(7P11.2) WILD-TYPE" "AMP PEAK  8(7P11.2) WILD-TYPE" 
                   TCGA-CG-4440                    TCGA-CG-4441 
  "AMP PEAK  8(7P11.2) MUTATED" "AMP PEAK  8(7P11.2) WILD-TYPE" 
                   TCGA-CG-4443                    TCGA-CG-4444 
"AMP PEAK  8(7P11.2) WILD-TYPE" "AMP PEAK  8(7P11.2) WILD-TYPE" 
                   TCGA-CG-4449                    TCGA-CG-4455 
"AMP PEAK  8(7P11.2) WILD-TYPE" "AMP PEAK  8(7P11.2) WILD-TYPE" 
                   TCGA-CG-4460                    TCGA-CG-4462 
  "AMP PEAK  8(7P11.2) MUTATED" "AMP PEAK  8(7P11.2) WILD-TYPE" 
                   TCGA-CG-4465                    TCGA-CG-4466 
"AMP PEAK  8(7P11.2) WILD-TYPE"   "AMP PEAK  8(7P11.2) MUTATED" 
                   TCGA-CG-4469                    TCGA-CG-4472 
  "AMP PEAK  8(7P11.2) MUTATED"   "AMP PEAK  8(7P11.2) MUTATED" 
                   TCGA-CG-4474                    TCGA-CG-4477 
  "AMP PEAK  8(7P11.2) MUTATED" "AMP PEAK  8(7P11.2) WILD-TYPE" 
                   TCGA-CG-5716                    TCGA-CG-5717 
"AMP PEAK  8(7P11.2) WILD-TYPE" "AMP PEAK  8(7P11.2) WILD-TYPE" 
                   TCGA-CG-5718                    TCGA-CG-5719 
  "AMP PEAK  8(7P11.2) MUTATED" "AMP PEAK  8(7P11.2) WILD-TYPE" 
                   TCGA-CG-5720                    TCGA-CG-5721 
"AMP PEAK  8(7P11.2) WILD-TYPE" "AMP PEAK  8(7P11.2) WILD-TYPE" 
                   TCGA-CG-5722                    TCGA-CG-5723 
"AMP PEAK  8(7P11.2) WILD-TYPE" "AMP PEAK  8(7P11.2) WILD-TYPE" 
                   TCGA-CG-5724                    TCGA-CG-5725 
  "AMP PEAK  8(7P11.2) MUTATED" "AMP PEAK  8(7P11.2) WILD-TYPE" 
                   TCGA-CG-5726                    TCGA-CG-5727 
  "AMP PEAK  8(7P11.2) MUTATED"   "AMP PEAK  8(7P11.2) MUTATED" 
                   TCGA-CG-5728                    TCGA-CG-5730 
"AMP PEAK  8(7P11.2) WILD-TYPE" "AMP PEAK  8(7P11.2) WILD-TYPE" 
                   TCGA-CG-5732                    TCGA-CG-5733 
"AMP PEAK  8(7P11.2) WILD-TYPE"   "AMP PEAK  8(7P11.2) MUTATED" 
                   TCGA-CG-5734                    TCGA-D7-5577 
  "AMP PEAK  8(7P11.2) MUTATED" "AMP PEAK  8(7P11.2) WILD-TYPE" 
                   TCGA-D7-5578                    TCGA-D7-5579 
  "AMP PEAK  8(7P11.2) MUTATED"   "AMP PEAK  8(7P11.2) MUTATED" 
                   TCGA-D7-6518                    TCGA-D7-6519 
  "AMP PEAK  8(7P11.2) MUTATED" "AMP PEAK  8(7P11.2) WILD-TYPE" 
                   TCGA-D7-6520                    TCGA-D7-6521 
  "AMP PEAK  8(7P11.2) MUTATED"   "AMP PEAK  8(7P11.2) MUTATED" 
                   TCGA-D7-6522                    TCGA-D7-6524 
"AMP PEAK  8(7P11.2) WILD-TYPE" "AMP PEAK  8(7P11.2) WILD-TYPE" 
                   TCGA-D7-6525                    TCGA-D7-6526 
"AMP PEAK  8(7P11.2) WILD-TYPE"   "AMP PEAK  8(7P11.2) MUTATED" 
                   TCGA-D7-6527                    TCGA-D7-6528 
"AMP PEAK  8(7P11.2) WILD-TYPE"   "AMP PEAK  8(7P11.2) MUTATED" 
                   TCGA-D7-6815                    TCGA-D7-6817 
  "AMP PEAK  8(7P11.2) MUTATED" "AMP PEAK  8(7P11.2) WILD-TYPE" 
                   TCGA-D7-6818                    TCGA-D7-6820 
"AMP PEAK  8(7P11.2) WILD-TYPE"   "AMP PEAK  8(7P11.2) MUTATED" 
                   TCGA-D7-6822                    TCGA-EQ-5647 
  "AMP PEAK  8(7P11.2) MUTATED" "AMP PEAK  8(7P11.2) WILD-TYPE" 
                   TCGA-EQ-8122                    TCGA-F1-6177 
  "AMP PEAK  8(7P11.2) MUTATED"   "AMP PEAK  8(7P11.2) MUTATED" 
                   TCGA-F1-6874                    TCGA-F1-6875 
  "AMP PEAK  8(7P11.2) MUTATED"   "AMP PEAK  8(7P11.2) MUTATED" 
                   TCGA-FP-7735                    TCGA-FP-7829 
  "AMP PEAK  8(7P11.2) MUTATED"   "AMP PEAK  8(7P11.2) MUTATED" 
                   TCGA-FP-7916                    TCGA-FP-7998 
  "AMP PEAK  8(7P11.2) MUTATED" "AMP PEAK  8(7P11.2) WILD-TYPE" 
                   TCGA-HJ-7597                    TCGA-IN-7806 
  "AMP PEAK  8(7P11.2) MUTATED" "AMP PEAK  8(7P11.2) WILD-TYPE" 
                   TCGA-IN-7808                    TCGA-IP-7968 
  "AMP PEAK  8(7P11.2) MUTATED" "AMP PEAK  8(7P11.2) WILD-TYPE" 
                   TCGA-B7-5816                    TCGA-B7-5818 
"AMP PEAK  8(7P11.2) WILD-TYPE"   "AMP PEAK  8(7P11.2) MUTATED" 
                   TCGA-BR-6452                    TCGA-BR-6455 
"AMP PEAK  8(7P11.2) WILD-TYPE" "AMP PEAK  8(7P11.2) WILD-TYPE" 
                   TCGA-BR-6457                    TCGA-BR-6458 
"AMP PEAK  8(7P11.2) WILD-TYPE"   "AMP PEAK  8(7P11.2) MUTATED" 
                   TCGA-BR-6563                    TCGA-BR-6564 
"AMP PEAK  8(7P11.2) WILD-TYPE" "AMP PEAK  8(7P11.2) WILD-TYPE" 
                   TCGA-BR-6565                    TCGA-BR-6566 
  "AMP PEAK  8(7P11.2) MUTATED"   "AMP PEAK  8(7P11.2) MUTATED" 
                   TCGA-BR-6705                    TCGA-BR-6706 
  "AMP PEAK  8(7P11.2) MUTATED"   "AMP PEAK  8(7P11.2) MUTATED" 
                   TCGA-BR-6707                    TCGA-BR-6709 
"AMP PEAK  8(7P11.2) WILD-TYPE" "AMP PEAK  8(7P11.2) WILD-TYPE" 
                   TCGA-BR-6710                    TCGA-BR-6801 
"AMP PEAK  8(7P11.2) WILD-TYPE"   "AMP PEAK  8(7P11.2) MUTATED" 
                   TCGA-BR-6802                    TCGA-BR-6803 
"AMP PEAK  8(7P11.2) WILD-TYPE" "AMP PEAK  8(7P11.2) WILD-TYPE" 
                   TCGA-BR-6852                    TCGA-BR-7196 
"AMP PEAK  8(7P11.2) WILD-TYPE" "AMP PEAK  8(7P11.2) WILD-TYPE" 
                   TCGA-BR-7197                    TCGA-BR-7703 
  "AMP PEAK  8(7P11.2) MUTATED"   "AMP PEAK  8(7P11.2) MUTATED" 
                   TCGA-BR-7704                    TCGA-BR-7707 
  "AMP PEAK  8(7P11.2) MUTATED" "AMP PEAK  8(7P11.2) WILD-TYPE" 
                   TCGA-BR-7715                    TCGA-BR-7716 
  "AMP PEAK  8(7P11.2) MUTATED" "AMP PEAK  8(7P11.2) WILD-TYPE" 
                   TCGA-BR-7717                    TCGA-BR-7722 
  "AMP PEAK  8(7P11.2) MUTATED" "AMP PEAK  8(7P11.2) WILD-TYPE" 
                   TCGA-BR-7723                    TCGA-BR-7851 
"AMP PEAK  8(7P11.2) WILD-TYPE" "AMP PEAK  8(7P11.2) WILD-TYPE" 
                   TCGA-BR-7901                    TCGA-BR-7957 
  "AMP PEAK  8(7P11.2) MUTATED" "AMP PEAK  8(7P11.2) WILD-TYPE" 
                   TCGA-BR-7958                    TCGA-BR-7959 
"AMP PEAK  8(7P11.2) WILD-TYPE" "AMP PEAK  8(7P11.2) WILD-TYPE" 
                   TCGA-BR-8059                    TCGA-BR-8060 
"AMP PEAK  8(7P11.2) WILD-TYPE" "AMP PEAK  8(7P11.2) WILD-TYPE" 
                   TCGA-BR-8077                    TCGA-BR-8078 
"AMP PEAK  8(7P11.2) WILD-TYPE" "AMP PEAK  8(7P11.2) WILD-TYPE" 
                   TCGA-BR-8080                    TCGA-BR-8081 
"AMP PEAK  8(7P11.2) WILD-TYPE" "AMP PEAK  8(7P11.2) WILD-TYPE" 
                   TCGA-BR-8284                    TCGA-BR-8285 
"AMP PEAK  8(7P11.2) WILD-TYPE" "AMP PEAK  8(7P11.2) WILD-TYPE" 
                   TCGA-BR-8286                    TCGA-BR-8289 
"AMP PEAK  8(7P11.2) WILD-TYPE" "AMP PEAK  8(7P11.2) WILD-TYPE" 
                   TCGA-BR-8291                    TCGA-BR-8295 
"AMP PEAK  8(7P11.2) WILD-TYPE" "AMP PEAK  8(7P11.2) WILD-TYPE" 
                   TCGA-BR-8296                    TCGA-BR-8297 
"AMP PEAK  8(7P11.2) WILD-TYPE" "AMP PEAK  8(7P11.2) WILD-TYPE" 
                   TCGA-CD-5798                    TCGA-CD-5799 
"AMP PEAK  8(7P11.2) WILD-TYPE"   "AMP PEAK  8(7P11.2) MUTATED" 
                   TCGA-CD-5800                    TCGA-CD-5801 
"AMP PEAK  8(7P11.2) WILD-TYPE"   "AMP PEAK  8(7P11.2) MUTATED" 
                   TCGA-CD-5802                    TCGA-CD-5803 
"AMP PEAK  8(7P11.2) WILD-TYPE" "AMP PEAK  8(7P11.2) WILD-TYPE" 
                   TCGA-CG-4300                    TCGA-CG-4301 
  "AMP PEAK  8(7P11.2) MUTATED" "AMP PEAK  8(7P11.2) WILD-TYPE" 
                   TCGA-CG-4304                    TCGA-CG-4305 
  "AMP PEAK  8(7P11.2) MUTATED"   "AMP PEAK  8(7P11.2) MUTATED" 
                   TCGA-CG-4306                    TCGA-CG-4436 
"AMP PEAK  8(7P11.2) WILD-TYPE"   "AMP PEAK  8(7P11.2) MUTATED" 
                   TCGA-CG-4437                    TCGA-CG-4438 
"AMP PEAK  8(7P11.2) WILD-TYPE" "AMP PEAK  8(7P11.2) WILD-TYPE" 
                   TCGA-CG-4440                    TCGA-CG-4441 
  "AMP PEAK  8(7P11.2) MUTATED" "AMP PEAK  8(7P11.2) WILD-TYPE" 
                   TCGA-CG-4443                    TCGA-CG-4444 
"AMP PEAK  8(7P11.2) WILD-TYPE" "AMP PEAK  8(7P11.2) WILD-TYPE" 
                   TCGA-CG-4449                    TCGA-CG-4455 
"AMP PEAK  8(7P11.2) WILD-TYPE" "AMP PEAK  8(7P11.2) WILD-TYPE" 
                   TCGA-CG-4460                    TCGA-CG-4462 
  "AMP PEAK  8(7P11.2) MUTATED" "AMP PEAK  8(7P11.2) WILD-TYPE" 
                   TCGA-CG-4465                    TCGA-CG-4466 
"AMP PEAK  8(7P11.2) WILD-TYPE"   "AMP PEAK  8(7P11.2) MUTATED" 
                   TCGA-CG-4469                    TCGA-CG-4472 
  "AMP PEAK  8(7P11.2) MUTATED"   "AMP PEAK  8(7P11.2) MUTATED" 
                   TCGA-CG-4474                    TCGA-CG-4477 
  "AMP PEAK  8(7P11.2) MUTATED" "AMP PEAK  8(7P11.2) WILD-TYPE" 
                   TCGA-CG-5716                    TCGA-CG-5717 
"AMP PEAK  8(7P11.2) WILD-TYPE" "AMP PEAK  8(7P11.2) WILD-TYPE" 
                   TCGA-CG-5718                    TCGA-CG-5719 
  "AMP PEAK  8(7P11.2) MUTATED" "AMP PEAK  8(7P11.2) WILD-TYPE" 
                   TCGA-CG-5720                    TCGA-CG-5721 
"AMP PEAK  8(7P11.2) WILD-TYPE" "AMP PEAK  8(7P11.2) WILD-TYPE" 
                   TCGA-CG-5722                    TCGA-CG-5723 
"AMP PEAK  8(7P11.2) WILD-TYPE" "AMP PEAK  8(7P11.2) WILD-TYPE" 
                   TCGA-CG-5724                    TCGA-CG-5725 
  "AMP PEAK  8(7P11.2) MUTATED" "AMP PEAK  8(7P11.2) WILD-TYPE" 
                   TCGA-CG-5726                    TCGA-CG-5727 
  "AMP PEAK  8(7P11.2) MUTATED"   "AMP PEAK  8(7P11.2) MUTATED" 
                   TCGA-CG-5728                    TCGA-CG-5730 
"AMP PEAK  8(7P11.2) WILD-TYPE" "AMP PEAK  8(7P11.2) WILD-TYPE" 
                   TCGA-CG-5732                    TCGA-CG-5733 
"AMP PEAK  8(7P11.2) WILD-TYPE"   "AMP PEAK  8(7P11.2) MUTATED" 
                   TCGA-CG-5734                    TCGA-D7-5577 
  "AMP PEAK  8(7P11.2) MUTATED" "AMP PEAK  8(7P11.2) WILD-TYPE" 
                   TCGA-D7-5578                    TCGA-D7-5579 
  "AMP PEAK  8(7P11.2) MUTATED"   "AMP PEAK  8(7P11.2) MUTATED" 
                   TCGA-D7-6518                    TCGA-D7-6519 
  "AMP PEAK  8(7P11.2) MUTATED" "AMP PEAK  8(7P11.2) WILD-TYPE" 
                   TCGA-D7-6520                    TCGA-D7-6521 
  "AMP PEAK  8(7P11.2) MUTATED"   "AMP PEAK  8(7P11.2) MUTATED" 
                   TCGA-D7-6522                    TCGA-D7-6524 
"AMP PEAK  8(7P11.2) WILD-TYPE" "AMP PEAK  8(7P11.2) WILD-TYPE" 
                   TCGA-D7-6525                    TCGA-D7-6526 
"AMP PEAK  8(7P11.2) WILD-TYPE"   "AMP PEAK  8(7P11.2) MUTATED" 
                   TCGA-D7-6527                    TCGA-D7-6528 
"AMP PEAK  8(7P11.2) WILD-TYPE"   "AMP PEAK  8(7P11.2) MUTATED" 
                   TCGA-D7-6815                    TCGA-D7-6817 
  "AMP PEAK  8(7P11.2) MUTATED" "AMP PEAK  8(7P11.2) WILD-TYPE" 
                   TCGA-D7-6818                    TCGA-D7-6820 
"AMP PEAK  8(7P11.2) WILD-TYPE"   "AMP PEAK  8(7P11.2) MUTATED" 
                   TCGA-D7-6822                    TCGA-EQ-5647 
  "AMP PEAK  8(7P11.2) MUTATED" "AMP PEAK  8(7P11.2) WILD-TYPE" 
                   TCGA-EQ-8122                    TCGA-F1-6177 
  "AMP PEAK  8(7P11.2) MUTATED"   "AMP PEAK  8(7P11.2) MUTATED" 
                   TCGA-F1-6874                    TCGA-F1-6875 
  "AMP PEAK  8(7P11.2) MUTATED"   "AMP PEAK  8(7P11.2) MUTATED" 
                   TCGA-FP-7735                    TCGA-FP-7829 
  "AMP PEAK  8(7P11.2) MUTATED"   "AMP PEAK  8(7P11.2) MUTATED" 
                   TCGA-FP-7916                    TCGA-FP-7998 
  "AMP PEAK  8(7P11.2) MUTATED" "AMP PEAK  8(7P11.2) WILD-TYPE" 
                   TCGA-HJ-7597                    TCGA-IN-7806 
  "AMP PEAK  8(7P11.2) MUTATED" "AMP PEAK  8(7P11.2) WILD-TYPE" 
                   TCGA-IN-7808                    TCGA-IP-7968 
  "AMP PEAK  8(7P11.2) MUTATED" "AMP PEAK  8(7P11.2) WILD-TYPE" 
[1] "hr=" "1.1"
D8V2, continuous
D8V3, binary
[1] "tbl2"
                               cls
clus                            [,1] [,2]
  AMP PEAK  8(7P11.2) MUTATED     23   46
  AMP PEAK  8(7P11.2) WILD-TYPE   42   50
        clus
vv       AMP PEAK  8(7P11.2) MUTATED AMP PEAK  8(7P11.2) WILD-TYPE
  FEMALE                          23                            42
  MALE                            46                            50
D8V4, multiclass
D8V5, multiclass
    clus
vv   AMP PEAK  8(7P11.2) MUTATED AMP PEAK  8(7P11.2) WILD-TYPE
  T1                           4                             2
  T2                          21                            32
  T3                          29                            30
  T4                           8                            25
D8V6, multiclass
    clus
vv   AMP PEAK  8(7P11.2) MUTATED AMP PEAK  8(7P11.2) WILD-TYPE
  N0                          22                            28
  N1                          24                            33
  N2                          11                            13
  N3                           7                            12
D8V7, multiclass
    clus
vv   AMP PEAK  8(7P11.2) MUTATED AMP PEAK  8(7P11.2) WILD-TYPE
  M0                          57                            75
  M1                           5                            13
  MX                           7                             4
D8V8, multiclass
     clus
vv    AMP PEAK  8(7P11.2) MUTATED AMP PEAK  8(7P11.2) WILD-TYPE
  I                            15                            10
  II                           17                            26
  III                          20                            28
  IV                            9                            20
D8V9, binary
[1] "tbl2"
                               cls
clus                            [,1] [,2]
  AMP PEAK  8(7P11.2) MUTATED     68    1
  AMP PEAK  8(7P11.2) WILD-TYPE   88    4
     clus
vv    AMP PEAK  8(7P11.2) MUTATED AMP PEAK  8(7P11.2) WILD-TYPE
  NO                            1                             4
  YES                          68                            88

Clustering(9) Variable = Amp Peak  9(7q21.2) mutation analysis
D9V1, survival
                   TCGA-B7-5816                    TCGA-B7-5818 
"AMP PEAK  9(7Q21.2) WILD-TYPE"   "AMP PEAK  9(7Q21.2) MUTATED" 
                   TCGA-BR-6452                    TCGA-BR-6455 
"AMP PEAK  9(7Q21.2) WILD-TYPE" "AMP PEAK  9(7Q21.2) WILD-TYPE" 
                   TCGA-BR-6457                    TCGA-BR-6458 
"AMP PEAK  9(7Q21.2) WILD-TYPE"   "AMP PEAK  9(7Q21.2) MUTATED" 
                   TCGA-BR-6563                    TCGA-BR-6564 
"AMP PEAK  9(7Q21.2) WILD-TYPE"   "AMP PEAK  9(7Q21.2) MUTATED" 
                   TCGA-BR-6565                    TCGA-BR-6566 
  "AMP PEAK  9(7Q21.2) MUTATED"   "AMP PEAK  9(7Q21.2) MUTATED" 
                   TCGA-BR-6705                    TCGA-BR-6706 
  "AMP PEAK  9(7Q21.2) MUTATED"   "AMP PEAK  9(7Q21.2) MUTATED" 
                   TCGA-BR-6707                    TCGA-BR-6709 
"AMP PEAK  9(7Q21.2) WILD-TYPE" "AMP PEAK  9(7Q21.2) WILD-TYPE" 
                   TCGA-BR-6710                    TCGA-BR-6801 
"AMP PEAK  9(7Q21.2) WILD-TYPE"   "AMP PEAK  9(7Q21.2) MUTATED" 
                   TCGA-BR-6802                    TCGA-BR-6803 
"AMP PEAK  9(7Q21.2) WILD-TYPE" "AMP PEAK  9(7Q21.2) WILD-TYPE" 
                   TCGA-BR-6852                    TCGA-BR-7196 
"AMP PEAK  9(7Q21.2) WILD-TYPE" "AMP PEAK  9(7Q21.2) WILD-TYPE" 
                   TCGA-BR-7197                    TCGA-BR-7703 
  "AMP PEAK  9(7Q21.2) MUTATED"   "AMP PEAK  9(7Q21.2) MUTATED" 
                   TCGA-BR-7704                    TCGA-BR-7707 
  "AMP PEAK  9(7Q21.2) MUTATED" "AMP PEAK  9(7Q21.2) WILD-TYPE" 
                   TCGA-BR-7715                    TCGA-BR-7716 
  "AMP PEAK  9(7Q21.2) MUTATED" "AMP PEAK  9(7Q21.2) WILD-TYPE" 
                   TCGA-BR-7717                    TCGA-BR-7722 
"AMP PEAK  9(7Q21.2) WILD-TYPE" "AMP PEAK  9(7Q21.2) WILD-TYPE" 
                   TCGA-BR-7723                    TCGA-BR-7851 
"AMP PEAK  9(7Q21.2) WILD-TYPE" "AMP PEAK  9(7Q21.2) WILD-TYPE" 
                   TCGA-BR-7901                    TCGA-BR-7957 
"AMP PEAK  9(7Q21.2) WILD-TYPE" "AMP PEAK  9(7Q21.2) WILD-TYPE" 
                   TCGA-BR-7958                    TCGA-BR-7959 
"AMP PEAK  9(7Q21.2) WILD-TYPE" "AMP PEAK  9(7Q21.2) WILD-TYPE" 
                   TCGA-BR-8059                    TCGA-BR-8060 
"AMP PEAK  9(7Q21.2) WILD-TYPE" "AMP PEAK  9(7Q21.2) WILD-TYPE" 
                   TCGA-BR-8077                    TCGA-BR-8078 
"AMP PEAK  9(7Q21.2) WILD-TYPE" "AMP PEAK  9(7Q21.2) WILD-TYPE" 
                   TCGA-BR-8080                    TCGA-BR-8081 
"AMP PEAK  9(7Q21.2) WILD-TYPE" "AMP PEAK  9(7Q21.2) WILD-TYPE" 
                   TCGA-BR-8284                    TCGA-BR-8285 
"AMP PEAK  9(7Q21.2) WILD-TYPE" "AMP PEAK  9(7Q21.2) WILD-TYPE" 
                   TCGA-BR-8286                    TCGA-BR-8289 
"AMP PEAK  9(7Q21.2) WILD-TYPE" "AMP PEAK  9(7Q21.2) WILD-TYPE" 
                   TCGA-BR-8291                    TCGA-BR-8295 
"AMP PEAK  9(7Q21.2) WILD-TYPE" "AMP PEAK  9(7Q21.2) WILD-TYPE" 
                   TCGA-BR-8296                    TCGA-BR-8297 
"AMP PEAK  9(7Q21.2) WILD-TYPE" "AMP PEAK  9(7Q21.2) WILD-TYPE" 
                   TCGA-CD-5798                    TCGA-CD-5799 
"AMP PEAK  9(7Q21.2) WILD-TYPE"   "AMP PEAK  9(7Q21.2) MUTATED" 
                   TCGA-CD-5800                    TCGA-CD-5801 
"AMP PEAK  9(7Q21.2) WILD-TYPE"   "AMP PEAK  9(7Q21.2) MUTATED" 
                   TCGA-CD-5802                    TCGA-CD-5803 
"AMP PEAK  9(7Q21.2) WILD-TYPE" "AMP PEAK  9(7Q21.2) WILD-TYPE" 
                   TCGA-CG-4300                    TCGA-CG-4301 
  "AMP PEAK  9(7Q21.2) MUTATED"   "AMP PEAK  9(7Q21.2) MUTATED" 
                   TCGA-CG-4304                    TCGA-CG-4305 
  "AMP PEAK  9(7Q21.2) MUTATED"   "AMP PEAK  9(7Q21.2) MUTATED" 
                   TCGA-CG-4306                    TCGA-CG-4436 
"AMP PEAK  9(7Q21.2) WILD-TYPE"   "AMP PEAK  9(7Q21.2) MUTATED" 
                   TCGA-CG-4437                    TCGA-CG-4438 
"AMP PEAK  9(7Q21.2) WILD-TYPE"   "AMP PEAK  9(7Q21.2) MUTATED" 
                   TCGA-CG-4440                    TCGA-CG-4441 
  "AMP PEAK  9(7Q21.2) MUTATED"   "AMP PEAK  9(7Q21.2) MUTATED" 
                   TCGA-CG-4443                    TCGA-CG-4444 
"AMP PEAK  9(7Q21.2) WILD-TYPE" "AMP PEAK  9(7Q21.2) WILD-TYPE" 
                   TCGA-CG-4449                    TCGA-CG-4455 
"AMP PEAK  9(7Q21.2) WILD-TYPE"   "AMP PEAK  9(7Q21.2) MUTATED" 
                   TCGA-CG-4460                    TCGA-CG-4462 
"AMP PEAK  9(7Q21.2) WILD-TYPE" "AMP PEAK  9(7Q21.2) WILD-TYPE" 
                   TCGA-CG-4465                    TCGA-CG-4466 
"AMP PEAK  9(7Q21.2) WILD-TYPE"   "AMP PEAK  9(7Q21.2) MUTATED" 
                   TCGA-CG-4469                    TCGA-CG-4472 
  "AMP PEAK  9(7Q21.2) MUTATED"   "AMP PEAK  9(7Q21.2) MUTATED" 
                   TCGA-CG-4474                    TCGA-CG-4477 
  "AMP PEAK  9(7Q21.2) MUTATED" "AMP PEAK  9(7Q21.2) WILD-TYPE" 
                   TCGA-CG-5716                    TCGA-CG-5717 
"AMP PEAK  9(7Q21.2) WILD-TYPE" "AMP PEAK  9(7Q21.2) WILD-TYPE" 
                   TCGA-CG-5718                    TCGA-CG-5719 
  "AMP PEAK  9(7Q21.2) MUTATED" "AMP PEAK  9(7Q21.2) WILD-TYPE" 
                   TCGA-CG-5720                    TCGA-CG-5721 
"AMP PEAK  9(7Q21.2) WILD-TYPE" "AMP PEAK  9(7Q21.2) WILD-TYPE" 
                   TCGA-CG-5722                    TCGA-CG-5723 
"AMP PEAK  9(7Q21.2) WILD-TYPE" "AMP PEAK  9(7Q21.2) WILD-TYPE" 
                   TCGA-CG-5724                    TCGA-CG-5725 
  "AMP PEAK  9(7Q21.2) MUTATED"   "AMP PEAK  9(7Q21.2) MUTATED" 
                   TCGA-CG-5726                    TCGA-CG-5727 
  "AMP PEAK  9(7Q21.2) MUTATED"   "AMP PEAK  9(7Q21.2) MUTATED" 
                   TCGA-CG-5728                    TCGA-CG-5730 
"AMP PEAK  9(7Q21.2) WILD-TYPE" "AMP PEAK  9(7Q21.2) WILD-TYPE" 
                   TCGA-CG-5732                    TCGA-CG-5733 
"AMP PEAK  9(7Q21.2) WILD-TYPE"   "AMP PEAK  9(7Q21.2) MUTATED" 
                   TCGA-CG-5734                    TCGA-D7-5577 
"AMP PEAK  9(7Q21.2) WILD-TYPE" "AMP PEAK  9(7Q21.2) WILD-TYPE" 
                   TCGA-D7-5578                    TCGA-D7-5579 
  "AMP PEAK  9(7Q21.2) MUTATED"   "AMP PEAK  9(7Q21.2) MUTATED" 
                   TCGA-D7-6518                    TCGA-D7-6519 
  "AMP PEAK  9(7Q21.2) MUTATED" "AMP PEAK  9(7Q21.2) WILD-TYPE" 
                   TCGA-D7-6520                    TCGA-D7-6521 
  "AMP PEAK  9(7Q21.2) MUTATED"   "AMP PEAK  9(7Q21.2) MUTATED" 
                   TCGA-D7-6522                    TCGA-D7-6524 
"AMP PEAK  9(7Q21.2) WILD-TYPE" "AMP PEAK  9(7Q21.2) WILD-TYPE" 
                   TCGA-D7-6525                    TCGA-D7-6526 
  "AMP PEAK  9(7Q21.2) MUTATED"   "AMP PEAK  9(7Q21.2) MUTATED" 
                   TCGA-D7-6527                    TCGA-D7-6528 
  "AMP PEAK  9(7Q21.2) MUTATED"   "AMP PEAK  9(7Q21.2) MUTATED" 
                   TCGA-D7-6815                    TCGA-D7-6817 
  "AMP PEAK  9(7Q21.2) MUTATED"   "AMP PEAK  9(7Q21.2) MUTATED" 
                   TCGA-D7-6818                    TCGA-D7-6820 
"AMP PEAK  9(7Q21.2) WILD-TYPE" "AMP PEAK  9(7Q21.2) WILD-TYPE" 
                   TCGA-D7-6822                    TCGA-EQ-5647 
"AMP PEAK  9(7Q21.2) WILD-TYPE" "AMP PEAK  9(7Q21.2) WILD-TYPE" 
                   TCGA-EQ-8122                    TCGA-F1-6177 
  "AMP PEAK  9(7Q21.2) MUTATED"   "AMP PEAK  9(7Q21.2) MUTATED" 
                   TCGA-F1-6874                    TCGA-F1-6875 
  "AMP PEAK  9(7Q21.2) MUTATED"   "AMP PEAK  9(7Q21.2) MUTATED" 
                   TCGA-FP-7735                    TCGA-FP-7829 
  "AMP PEAK  9(7Q21.2) MUTATED"   "AMP PEAK  9(7Q21.2) MUTATED" 
                   TCGA-FP-7916                    TCGA-FP-7998 
"AMP PEAK  9(7Q21.2) WILD-TYPE"   "AMP PEAK  9(7Q21.2) MUTATED" 
                   TCGA-HJ-7597                    TCGA-IN-7806 
  "AMP PEAK  9(7Q21.2) MUTATED" "AMP PEAK  9(7Q21.2) WILD-TYPE" 
                   TCGA-IN-7808                    TCGA-IP-7968 
  "AMP PEAK  9(7Q21.2) MUTATED" "AMP PEAK  9(7Q21.2) WILD-TYPE" 
                   TCGA-B7-5816                    TCGA-B7-5818 
"AMP PEAK  9(7Q21.2) WILD-TYPE"   "AMP PEAK  9(7Q21.2) MUTATED" 
                   TCGA-BR-6452                    TCGA-BR-6455 
"AMP PEAK  9(7Q21.2) WILD-TYPE" "AMP PEAK  9(7Q21.2) WILD-TYPE" 
                   TCGA-BR-6457                    TCGA-BR-6458 
"AMP PEAK  9(7Q21.2) WILD-TYPE"   "AMP PEAK  9(7Q21.2) MUTATED" 
                   TCGA-BR-6563                    TCGA-BR-6564 
"AMP PEAK  9(7Q21.2) WILD-TYPE"   "AMP PEAK  9(7Q21.2) MUTATED" 
                   TCGA-BR-6565                    TCGA-BR-6566 
  "AMP PEAK  9(7Q21.2) MUTATED"   "AMP PEAK  9(7Q21.2) MUTATED" 
                   TCGA-BR-6705                    TCGA-BR-6706 
  "AMP PEAK  9(7Q21.2) MUTATED"   "AMP PEAK  9(7Q21.2) MUTATED" 
                   TCGA-BR-6707                    TCGA-BR-6709 
"AMP PEAK  9(7Q21.2) WILD-TYPE" "AMP PEAK  9(7Q21.2) WILD-TYPE" 
                   TCGA-BR-6710                    TCGA-BR-6801 
"AMP PEAK  9(7Q21.2) WILD-TYPE"   "AMP PEAK  9(7Q21.2) MUTATED" 
                   TCGA-BR-6802                    TCGA-BR-6803 
"AMP PEAK  9(7Q21.2) WILD-TYPE" "AMP PEAK  9(7Q21.2) WILD-TYPE" 
                   TCGA-BR-6852                    TCGA-BR-7196 
"AMP PEAK  9(7Q21.2) WILD-TYPE" "AMP PEAK  9(7Q21.2) WILD-TYPE" 
                   TCGA-BR-7197                    TCGA-BR-7703 
  "AMP PEAK  9(7Q21.2) MUTATED"   "AMP PEAK  9(7Q21.2) MUTATED" 
                   TCGA-BR-7704                    TCGA-BR-7707 
  "AMP PEAK  9(7Q21.2) MUTATED" "AMP PEAK  9(7Q21.2) WILD-TYPE" 
                   TCGA-BR-7715                    TCGA-BR-7716 
  "AMP PEAK  9(7Q21.2) MUTATED" "AMP PEAK  9(7Q21.2) WILD-TYPE" 
                   TCGA-BR-7717                    TCGA-BR-7722 
"AMP PEAK  9(7Q21.2) WILD-TYPE" "AMP PEAK  9(7Q21.2) WILD-TYPE" 
                   TCGA-BR-7723                    TCGA-BR-7851 
"AMP PEAK  9(7Q21.2) WILD-TYPE" "AMP PEAK  9(7Q21.2) WILD-TYPE" 
                   TCGA-BR-7901                    TCGA-BR-7957 
"AMP PEAK  9(7Q21.2) WILD-TYPE" "AMP PEAK  9(7Q21.2) WILD-TYPE" 
                   TCGA-BR-7958                    TCGA-BR-7959 
"AMP PEAK  9(7Q21.2) WILD-TYPE" "AMP PEAK  9(7Q21.2) WILD-TYPE" 
                   TCGA-BR-8059                    TCGA-BR-8060 
"AMP PEAK  9(7Q21.2) WILD-TYPE" "AMP PEAK  9(7Q21.2) WILD-TYPE" 
                   TCGA-BR-8077                    TCGA-BR-8078 
"AMP PEAK  9(7Q21.2) WILD-TYPE" "AMP PEAK  9(7Q21.2) WILD-TYPE" 
                   TCGA-BR-8080                    TCGA-BR-8081 
"AMP PEAK  9(7Q21.2) WILD-TYPE" "AMP PEAK  9(7Q21.2) WILD-TYPE" 
                   TCGA-BR-8284                    TCGA-BR-8285 
"AMP PEAK  9(7Q21.2) WILD-TYPE" "AMP PEAK  9(7Q21.2) WILD-TYPE" 
                   TCGA-BR-8286                    TCGA-BR-8289 
"AMP PEAK  9(7Q21.2) WILD-TYPE" "AMP PEAK  9(7Q21.2) WILD-TYPE" 
                   TCGA-BR-8291                    TCGA-BR-8295 
"AMP PEAK  9(7Q21.2) WILD-TYPE" "AMP PEAK  9(7Q21.2) WILD-TYPE" 
                   TCGA-BR-8296                    TCGA-BR-8297 
"AMP PEAK  9(7Q21.2) WILD-TYPE" "AMP PEAK  9(7Q21.2) WILD-TYPE" 
                   TCGA-CD-5798                    TCGA-CD-5799 
"AMP PEAK  9(7Q21.2) WILD-TYPE"   "AMP PEAK  9(7Q21.2) MUTATED" 
                   TCGA-CD-5800                    TCGA-CD-5801 
"AMP PEAK  9(7Q21.2) WILD-TYPE"   "AMP PEAK  9(7Q21.2) MUTATED" 
                   TCGA-CD-5802                    TCGA-CD-5803 
"AMP PEAK  9(7Q21.2) WILD-TYPE" "AMP PEAK  9(7Q21.2) WILD-TYPE" 
                   TCGA-CG-4300                    TCGA-CG-4301 
  "AMP PEAK  9(7Q21.2) MUTATED"   "AMP PEAK  9(7Q21.2) MUTATED" 
                   TCGA-CG-4304                    TCGA-CG-4305 
  "AMP PEAK  9(7Q21.2) MUTATED"   "AMP PEAK  9(7Q21.2) MUTATED" 
                   TCGA-CG-4306                    TCGA-CG-4436 
"AMP PEAK  9(7Q21.2) WILD-TYPE"   "AMP PEAK  9(7Q21.2) MUTATED" 
                   TCGA-CG-4437                    TCGA-CG-4438 
"AMP PEAK  9(7Q21.2) WILD-TYPE"   "AMP PEAK  9(7Q21.2) MUTATED" 
                   TCGA-CG-4440                    TCGA-CG-4441 
  "AMP PEAK  9(7Q21.2) MUTATED"   "AMP PEAK  9(7Q21.2) MUTATED" 
                   TCGA-CG-4443                    TCGA-CG-4444 
"AMP PEAK  9(7Q21.2) WILD-TYPE" "AMP PEAK  9(7Q21.2) WILD-TYPE" 
                   TCGA-CG-4449                    TCGA-CG-4455 
"AMP PEAK  9(7Q21.2) WILD-TYPE"   "AMP PEAK  9(7Q21.2) MUTATED" 
                   TCGA-CG-4460                    TCGA-CG-4462 
"AMP PEAK  9(7Q21.2) WILD-TYPE" "AMP PEAK  9(7Q21.2) WILD-TYPE" 
                   TCGA-CG-4465                    TCGA-CG-4466 
"AMP PEAK  9(7Q21.2) WILD-TYPE"   "AMP PEAK  9(7Q21.2) MUTATED" 
                   TCGA-CG-4469                    TCGA-CG-4472 
  "AMP PEAK  9(7Q21.2) MUTATED"   "AMP PEAK  9(7Q21.2) MUTATED" 
                   TCGA-CG-4474                    TCGA-CG-4477 
  "AMP PEAK  9(7Q21.2) MUTATED" "AMP PEAK  9(7Q21.2) WILD-TYPE" 
                   TCGA-CG-5716                    TCGA-CG-5717 
"AMP PEAK  9(7Q21.2) WILD-TYPE" "AMP PEAK  9(7Q21.2) WILD-TYPE" 
                   TCGA-CG-5718                    TCGA-CG-5719 
  "AMP PEAK  9(7Q21.2) MUTATED" "AMP PEAK  9(7Q21.2) WILD-TYPE" 
                   TCGA-CG-5720                    TCGA-CG-5721 
"AMP PEAK  9(7Q21.2) WILD-TYPE" "AMP PEAK  9(7Q21.2) WILD-TYPE" 
                   TCGA-CG-5722                    TCGA-CG-5723 
"AMP PEAK  9(7Q21.2) WILD-TYPE" "AMP PEAK  9(7Q21.2) WILD-TYPE" 
                   TCGA-CG-5724                    TCGA-CG-5725 
  "AMP PEAK  9(7Q21.2) MUTATED"   "AMP PEAK  9(7Q21.2) MUTATED" 
                   TCGA-CG-5726                    TCGA-CG-5727 
  "AMP PEAK  9(7Q21.2) MUTATED"   "AMP PEAK  9(7Q21.2) MUTATED" 
                   TCGA-CG-5728                    TCGA-CG-5730 
"AMP PEAK  9(7Q21.2) WILD-TYPE" "AMP PEAK  9(7Q21.2) WILD-TYPE" 
                   TCGA-CG-5732                    TCGA-CG-5733 
"AMP PEAK  9(7Q21.2) WILD-TYPE"   "AMP PEAK  9(7Q21.2) MUTATED" 
                   TCGA-CG-5734                    TCGA-D7-5577 
"AMP PEAK  9(7Q21.2) WILD-TYPE" "AMP PEAK  9(7Q21.2) WILD-TYPE" 
                   TCGA-D7-5578                    TCGA-D7-5579 
  "AMP PEAK  9(7Q21.2) MUTATED"   "AMP PEAK  9(7Q21.2) MUTATED" 
                   TCGA-D7-6518                    TCGA-D7-6519 
  "AMP PEAK  9(7Q21.2) MUTATED" "AMP PEAK  9(7Q21.2) WILD-TYPE" 
                   TCGA-D7-6520                    TCGA-D7-6521 
  "AMP PEAK  9(7Q21.2) MUTATED"   "AMP PEAK  9(7Q21.2) MUTATED" 
                   TCGA-D7-6522                    TCGA-D7-6524 
"AMP PEAK  9(7Q21.2) WILD-TYPE" "AMP PEAK  9(7Q21.2) WILD-TYPE" 
                   TCGA-D7-6525                    TCGA-D7-6526 
  "AMP PEAK  9(7Q21.2) MUTATED"   "AMP PEAK  9(7Q21.2) MUTATED" 
                   TCGA-D7-6527                    TCGA-D7-6528 
  "AMP PEAK  9(7Q21.2) MUTATED"   "AMP PEAK  9(7Q21.2) MUTATED" 
                   TCGA-D7-6815                    TCGA-D7-6817 
  "AMP PEAK  9(7Q21.2) MUTATED"   "AMP PEAK  9(7Q21.2) MUTATED" 
                   TCGA-D7-6818                    TCGA-D7-6820 
"AMP PEAK  9(7Q21.2) WILD-TYPE" "AMP PEAK  9(7Q21.2) WILD-TYPE" 
                   TCGA-D7-6822                    TCGA-EQ-5647 
"AMP PEAK  9(7Q21.2) WILD-TYPE" "AMP PEAK  9(7Q21.2) WILD-TYPE" 
                   TCGA-EQ-8122                    TCGA-F1-6177 
  "AMP PEAK  9(7Q21.2) MUTATED"   "AMP PEAK  9(7Q21.2) MUTATED" 
                   TCGA-F1-6874                    TCGA-F1-6875 
  "AMP PEAK  9(7Q21.2) MUTATED"   "AMP PEAK  9(7Q21.2) MUTATED" 
                   TCGA-FP-7735                    TCGA-FP-7829 
  "AMP PEAK  9(7Q21.2) MUTATED"   "AMP PEAK  9(7Q21.2) MUTATED" 
                   TCGA-FP-7916                    TCGA-FP-7998 
"AMP PEAK  9(7Q21.2) WILD-TYPE"   "AMP PEAK  9(7Q21.2) MUTATED" 
                   TCGA-HJ-7597                    TCGA-IN-7806 
  "AMP PEAK  9(7Q21.2) MUTATED" "AMP PEAK  9(7Q21.2) WILD-TYPE" 
                   TCGA-IN-7808                    TCGA-IP-7968 
  "AMP PEAK  9(7Q21.2) MUTATED" "AMP PEAK  9(7Q21.2) WILD-TYPE" 
                   TCGA-B7-5816                    TCGA-B7-5818 
"AMP PEAK  9(7Q21.2) WILD-TYPE"   "AMP PEAK  9(7Q21.2) MUTATED" 
                   TCGA-BR-6452                    TCGA-BR-6455 
"AMP PEAK  9(7Q21.2) WILD-TYPE" "AMP PEAK  9(7Q21.2) WILD-TYPE" 
                   TCGA-BR-6457                    TCGA-BR-6458 
"AMP PEAK  9(7Q21.2) WILD-TYPE"   "AMP PEAK  9(7Q21.2) MUTATED" 
                   TCGA-BR-6563                    TCGA-BR-6564 
"AMP PEAK  9(7Q21.2) WILD-TYPE"   "AMP PEAK  9(7Q21.2) MUTATED" 
                   TCGA-BR-6565                    TCGA-BR-6566 
  "AMP PEAK  9(7Q21.2) MUTATED"   "AMP PEAK  9(7Q21.2) MUTATED" 
                   TCGA-BR-6705                    TCGA-BR-6706 
  "AMP PEAK  9(7Q21.2) MUTATED"   "AMP PEAK  9(7Q21.2) MUTATED" 
                   TCGA-BR-6707                    TCGA-BR-6709 
"AMP PEAK  9(7Q21.2) WILD-TYPE" "AMP PEAK  9(7Q21.2) WILD-TYPE" 
                   TCGA-BR-6710                    TCGA-BR-6801 
"AMP PEAK  9(7Q21.2) WILD-TYPE"   "AMP PEAK  9(7Q21.2) MUTATED" 
                   TCGA-BR-6802                    TCGA-BR-6803 
"AMP PEAK  9(7Q21.2) WILD-TYPE" "AMP PEAK  9(7Q21.2) WILD-TYPE" 
                   TCGA-BR-6852                    TCGA-BR-7196 
"AMP PEAK  9(7Q21.2) WILD-TYPE" "AMP PEAK  9(7Q21.2) WILD-TYPE" 
                   TCGA-BR-7197                    TCGA-BR-7703 
  "AMP PEAK  9(7Q21.2) MUTATED"   "AMP PEAK  9(7Q21.2) MUTATED" 
                   TCGA-BR-7704                    TCGA-BR-7707 
  "AMP PEAK  9(7Q21.2) MUTATED" "AMP PEAK  9(7Q21.2) WILD-TYPE" 
                   TCGA-BR-7715                    TCGA-BR-7716 
  "AMP PEAK  9(7Q21.2) MUTATED" "AMP PEAK  9(7Q21.2) WILD-TYPE" 
                   TCGA-BR-7717                    TCGA-BR-7722 
"AMP PEAK  9(7Q21.2) WILD-TYPE" "AMP PEAK  9(7Q21.2) WILD-TYPE" 
                   TCGA-BR-7723                    TCGA-BR-7851 
"AMP PEAK  9(7Q21.2) WILD-TYPE" "AMP PEAK  9(7Q21.2) WILD-TYPE" 
                   TCGA-BR-7901                    TCGA-BR-7957 
"AMP PEAK  9(7Q21.2) WILD-TYPE" "AMP PEAK  9(7Q21.2) WILD-TYPE" 
                   TCGA-BR-7958                    TCGA-BR-7959 
"AMP PEAK  9(7Q21.2) WILD-TYPE" "AMP PEAK  9(7Q21.2) WILD-TYPE" 
                   TCGA-BR-8059                    TCGA-BR-8060 
"AMP PEAK  9(7Q21.2) WILD-TYPE" "AMP PEAK  9(7Q21.2) WILD-TYPE" 
                   TCGA-BR-8077                    TCGA-BR-8078 
"AMP PEAK  9(7Q21.2) WILD-TYPE" "AMP PEAK  9(7Q21.2) WILD-TYPE" 
                   TCGA-BR-8080                    TCGA-BR-8081 
"AMP PEAK  9(7Q21.2) WILD-TYPE" "AMP PEAK  9(7Q21.2) WILD-TYPE" 
                   TCGA-BR-8284                    TCGA-BR-8285 
"AMP PEAK  9(7Q21.2) WILD-TYPE" "AMP PEAK  9(7Q21.2) WILD-TYPE" 
                   TCGA-BR-8286                    TCGA-BR-8289 
"AMP PEAK  9(7Q21.2) WILD-TYPE" "AMP PEAK  9(7Q21.2) WILD-TYPE" 
                   TCGA-BR-8291                    TCGA-BR-8295 
"AMP PEAK  9(7Q21.2) WILD-TYPE" "AMP PEAK  9(7Q21.2) WILD-TYPE" 
                   TCGA-BR-8296                    TCGA-BR-8297 
"AMP PEAK  9(7Q21.2) WILD-TYPE" "AMP PEAK  9(7Q21.2) WILD-TYPE" 
                   TCGA-CD-5798                    TCGA-CD-5799 
"AMP PEAK  9(7Q21.2) WILD-TYPE"   "AMP PEAK  9(7Q21.2) MUTATED" 
                   TCGA-CD-5800                    TCGA-CD-5801 
"AMP PEAK  9(7Q21.2) WILD-TYPE"   "AMP PEAK  9(7Q21.2) MUTATED" 
                   TCGA-CD-5802                    TCGA-CD-5803 
"AMP PEAK  9(7Q21.2) WILD-TYPE" "AMP PEAK  9(7Q21.2) WILD-TYPE" 
                   TCGA-CG-4300                    TCGA-CG-4301 
  "AMP PEAK  9(7Q21.2) MUTATED"   "AMP PEAK  9(7Q21.2) MUTATED" 
                   TCGA-CG-4304                    TCGA-CG-4305 
  "AMP PEAK  9(7Q21.2) MUTATED"   "AMP PEAK  9(7Q21.2) MUTATED" 
                   TCGA-CG-4306                    TCGA-CG-4436 
"AMP PEAK  9(7Q21.2) WILD-TYPE"   "AMP PEAK  9(7Q21.2) MUTATED" 
                   TCGA-CG-4437                    TCGA-CG-4438 
"AMP PEAK  9(7Q21.2) WILD-TYPE"   "AMP PEAK  9(7Q21.2) MUTATED" 
                   TCGA-CG-4440                    TCGA-CG-4441 
  "AMP PEAK  9(7Q21.2) MUTATED"   "AMP PEAK  9(7Q21.2) MUTATED" 
                   TCGA-CG-4443                    TCGA-CG-4444 
"AMP PEAK  9(7Q21.2) WILD-TYPE" "AMP PEAK  9(7Q21.2) WILD-TYPE" 
                   TCGA-CG-4449                    TCGA-CG-4455 
"AMP PEAK  9(7Q21.2) WILD-TYPE"   "AMP PEAK  9(7Q21.2) MUTATED" 
                   TCGA-CG-4460                    TCGA-CG-4462 
"AMP PEAK  9(7Q21.2) WILD-TYPE" "AMP PEAK  9(7Q21.2) WILD-TYPE" 
                   TCGA-CG-4465                    TCGA-CG-4466 
"AMP PEAK  9(7Q21.2) WILD-TYPE"   "AMP PEAK  9(7Q21.2) MUTATED" 
                   TCGA-CG-4469                    TCGA-CG-4472 
  "AMP PEAK  9(7Q21.2) MUTATED"   "AMP PEAK  9(7Q21.2) MUTATED" 
                   TCGA-CG-4474                    TCGA-CG-4477 
  "AMP PEAK  9(7Q21.2) MUTATED" "AMP PEAK  9(7Q21.2) WILD-TYPE" 
                   TCGA-CG-5716                    TCGA-CG-5717 
"AMP PEAK  9(7Q21.2) WILD-TYPE" "AMP PEAK  9(7Q21.2) WILD-TYPE" 
                   TCGA-CG-5718                    TCGA-CG-5719 
  "AMP PEAK  9(7Q21.2) MUTATED" "AMP PEAK  9(7Q21.2) WILD-TYPE" 
                   TCGA-CG-5720                    TCGA-CG-5721 
"AMP PEAK  9(7Q21.2) WILD-TYPE" "AMP PEAK  9(7Q21.2) WILD-TYPE" 
                   TCGA-CG-5722                    TCGA-CG-5723 
"AMP PEAK  9(7Q21.2) WILD-TYPE" "AMP PEAK  9(7Q21.2) WILD-TYPE" 
                   TCGA-CG-5724                    TCGA-CG-5725 
  "AMP PEAK  9(7Q21.2) MUTATED"   "AMP PEAK  9(7Q21.2) MUTATED" 
                   TCGA-CG-5726                    TCGA-CG-5727 
  "AMP PEAK  9(7Q21.2) MUTATED"   "AMP PEAK  9(7Q21.2) MUTATED" 
                   TCGA-CG-5728                    TCGA-CG-5730 
"AMP PEAK  9(7Q21.2) WILD-TYPE" "AMP PEAK  9(7Q21.2) WILD-TYPE" 
                   TCGA-CG-5732                    TCGA-CG-5733 
"AMP PEAK  9(7Q21.2) WILD-TYPE"   "AMP PEAK  9(7Q21.2) MUTATED" 
                   TCGA-CG-5734                    TCGA-D7-5577 
"AMP PEAK  9(7Q21.2) WILD-TYPE" "AMP PEAK  9(7Q21.2) WILD-TYPE" 
                   TCGA-D7-5578                    TCGA-D7-5579 
  "AMP PEAK  9(7Q21.2) MUTATED"   "AMP PEAK  9(7Q21.2) MUTATED" 
                   TCGA-D7-6518                    TCGA-D7-6519 
  "AMP PEAK  9(7Q21.2) MUTATED" "AMP PEAK  9(7Q21.2) WILD-TYPE" 
                   TCGA-D7-6520                    TCGA-D7-6521 
  "AMP PEAK  9(7Q21.2) MUTATED"   "AMP PEAK  9(7Q21.2) MUTATED" 
                   TCGA-D7-6522                    TCGA-D7-6524 
"AMP PEAK  9(7Q21.2) WILD-TYPE" "AMP PEAK  9(7Q21.2) WILD-TYPE" 
                   TCGA-D7-6525                    TCGA-D7-6526 
  "AMP PEAK  9(7Q21.2) MUTATED"   "AMP PEAK  9(7Q21.2) MUTATED" 
                   TCGA-D7-6527                    TCGA-D7-6528 
  "AMP PEAK  9(7Q21.2) MUTATED"   "AMP PEAK  9(7Q21.2) MUTATED" 
                   TCGA-D7-6815                    TCGA-D7-6817 
  "AMP PEAK  9(7Q21.2) MUTATED"   "AMP PEAK  9(7Q21.2) MUTATED" 
                   TCGA-D7-6818                    TCGA-D7-6820 
"AMP PEAK  9(7Q21.2) WILD-TYPE" "AMP PEAK  9(7Q21.2) WILD-TYPE" 
                   TCGA-D7-6822                    TCGA-EQ-5647 
"AMP PEAK  9(7Q21.2) WILD-TYPE" "AMP PEAK  9(7Q21.2) WILD-TYPE" 
                   TCGA-EQ-8122                    TCGA-F1-6177 
  "AMP PEAK  9(7Q21.2) MUTATED"   "AMP PEAK  9(7Q21.2) MUTATED" 
                   TCGA-F1-6874                    TCGA-F1-6875 
  "AMP PEAK  9(7Q21.2) MUTATED"   "AMP PEAK  9(7Q21.2) MUTATED" 
                   TCGA-FP-7735                    TCGA-FP-7829 
  "AMP PEAK  9(7Q21.2) MUTATED"   "AMP PEAK  9(7Q21.2) MUTATED" 
                   TCGA-FP-7916                    TCGA-FP-7998 
"AMP PEAK  9(7Q21.2) WILD-TYPE"   "AMP PEAK  9(7Q21.2) MUTATED" 
                   TCGA-HJ-7597                    TCGA-IN-7806 
  "AMP PEAK  9(7Q21.2) MUTATED" "AMP PEAK  9(7Q21.2) WILD-TYPE" 
                   TCGA-IN-7808                    TCGA-IP-7968 
  "AMP PEAK  9(7Q21.2) MUTATED" "AMP PEAK  9(7Q21.2) WILD-TYPE" 
[1] "hr=" "1.2"
D9V2, continuous
D9V3, binary
[1] "tbl2"
                               cls
clus                            [,1] [,2]
  AMP PEAK  9(7Q21.2) MUTATED     23   48
  AMP PEAK  9(7Q21.2) WILD-TYPE   42   48
        clus
vv       AMP PEAK  9(7Q21.2) MUTATED AMP PEAK  9(7Q21.2) WILD-TYPE
  FEMALE                          23                            42
  MALE                            48                            48
D9V4, multiclass
D9V5, multiclass
    clus
vv   AMP PEAK  9(7Q21.2) MUTATED AMP PEAK  9(7Q21.2) WILD-TYPE
  T1                           4                             2
  T2                          25                            28
  T3                          27                            32
  T4                           8                            25
D9V6, multiclass
    clus
vv   AMP PEAK  9(7Q21.2) MUTATED AMP PEAK  9(7Q21.2) WILD-TYPE
  N0                          22                            28
  N1                          21                            36
  N2                          14                            10
  N3                           8                            11
D9V7, multiclass
    clus
vv   AMP PEAK  9(7Q21.2) MUTATED AMP PEAK  9(7Q21.2) WILD-TYPE
  M0                          58                            74
  M1                           5                            13
  MX                           8                             3
D9V8, multiclass
     clus
vv    AMP PEAK  9(7Q21.2) MUTATED AMP PEAK  9(7Q21.2) WILD-TYPE
  I                            15                            10
  II                           18                            25
  III                          20                            28
  IV                            9                            20
D9V9, binary
[1] "tbl2"
                               cls
clus                            [,1] [,2]
  AMP PEAK  9(7Q21.2) MUTATED     69    2
  AMP PEAK  9(7Q21.2) WILD-TYPE   87    3
     clus
vv    AMP PEAK  9(7Q21.2) MUTATED AMP PEAK  9(7Q21.2) WILD-TYPE
  NO                            2                             3
  YES                          69                            87

Clustering(10) Variable = Amp Peak 10(8p23.1) mutation analysis
D10V1, survival
                   TCGA-B7-5816                    TCGA-B7-5818 
  "AMP PEAK 10(8P23.1) MUTATED" "AMP PEAK 10(8P23.1) WILD-TYPE" 
                   TCGA-BR-6452                    TCGA-BR-6455 
  "AMP PEAK 10(8P23.1) MUTATED"   "AMP PEAK 10(8P23.1) MUTATED" 
                   TCGA-BR-6457                    TCGA-BR-6458 
  "AMP PEAK 10(8P23.1) MUTATED"   "AMP PEAK 10(8P23.1) MUTATED" 
                   TCGA-BR-6563                    TCGA-BR-6564 
"AMP PEAK 10(8P23.1) WILD-TYPE" "AMP PEAK 10(8P23.1) WILD-TYPE" 
                   TCGA-BR-6565                    TCGA-BR-6566 
"AMP PEAK 10(8P23.1) WILD-TYPE" "AMP PEAK 10(8P23.1) WILD-TYPE" 
                   TCGA-BR-6705                    TCGA-BR-6706 
  "AMP PEAK 10(8P23.1) MUTATED" "AMP PEAK 10(8P23.1) WILD-TYPE" 
                   TCGA-BR-6707                    TCGA-BR-6709 
  "AMP PEAK 10(8P23.1) MUTATED" "AMP PEAK 10(8P23.1) WILD-TYPE" 
                   TCGA-BR-6710                    TCGA-BR-6801 
"AMP PEAK 10(8P23.1) WILD-TYPE" "AMP PEAK 10(8P23.1) WILD-TYPE" 
                   TCGA-BR-6802                    TCGA-BR-6803 
  "AMP PEAK 10(8P23.1) MUTATED"   "AMP PEAK 10(8P23.1) MUTATED" 
                   TCGA-BR-6852                    TCGA-BR-7196 
  "AMP PEAK 10(8P23.1) MUTATED" "AMP PEAK 10(8P23.1) WILD-TYPE" 
                   TCGA-BR-7197                    TCGA-BR-7703 
"AMP PEAK 10(8P23.1) WILD-TYPE" "AMP PEAK 10(8P23.1) WILD-TYPE" 
                   TCGA-BR-7704                    TCGA-BR-7707 
  "AMP PEAK 10(8P23.1) MUTATED"   "AMP PEAK 10(8P23.1) MUTATED" 
                   TCGA-BR-7715                    TCGA-BR-7716 
"AMP PEAK 10(8P23.1) WILD-TYPE" "AMP PEAK 10(8P23.1) WILD-TYPE" 
                   TCGA-BR-7717                    TCGA-BR-7722 
  "AMP PEAK 10(8P23.1) MUTATED" "AMP PEAK 10(8P23.1) WILD-TYPE" 
                   TCGA-BR-7723                    TCGA-BR-7851 
"AMP PEAK 10(8P23.1) WILD-TYPE" "AMP PEAK 10(8P23.1) WILD-TYPE" 
                   TCGA-BR-7901                    TCGA-BR-7957 
"AMP PEAK 10(8P23.1) WILD-TYPE"   "AMP PEAK 10(8P23.1) MUTATED" 
                   TCGA-BR-7958                    TCGA-BR-7959 
"AMP PEAK 10(8P23.1) WILD-TYPE" "AMP PEAK 10(8P23.1) WILD-TYPE" 
                   TCGA-BR-8059                    TCGA-BR-8060 
"AMP PEAK 10(8P23.1) WILD-TYPE" "AMP PEAK 10(8P23.1) WILD-TYPE" 
                   TCGA-BR-8077                    TCGA-BR-8078 
"AMP PEAK 10(8P23.1) WILD-TYPE" "AMP PEAK 10(8P23.1) WILD-TYPE" 
                   TCGA-BR-8080                    TCGA-BR-8081 
"AMP PEAK 10(8P23.1) WILD-TYPE" "AMP PEAK 10(8P23.1) WILD-TYPE" 
                   TCGA-BR-8284                    TCGA-BR-8285 
"AMP PEAK 10(8P23.1) WILD-TYPE" "AMP PEAK 10(8P23.1) WILD-TYPE" 
                   TCGA-BR-8286                    TCGA-BR-8289 
"AMP PEAK 10(8P23.1) WILD-TYPE" "AMP PEAK 10(8P23.1) WILD-TYPE" 
                   TCGA-BR-8291                    TCGA-BR-8295 
"AMP PEAK 10(8P23.1) WILD-TYPE" "AMP PEAK 10(8P23.1) WILD-TYPE" 
                   TCGA-BR-8296                    TCGA-BR-8297 
"AMP PEAK 10(8P23.1) WILD-TYPE" "AMP PEAK 10(8P23.1) WILD-TYPE" 
                   TCGA-CD-5798                    TCGA-CD-5799 
"AMP PEAK 10(8P23.1) WILD-TYPE"   "AMP PEAK 10(8P23.1) MUTATED" 
                   TCGA-CD-5800                    TCGA-CD-5801 
"AMP PEAK 10(8P23.1) WILD-TYPE" "AMP PEAK 10(8P23.1) WILD-TYPE" 
                   TCGA-CD-5802                    TCGA-CD-5803 
"AMP PEAK 10(8P23.1) WILD-TYPE"   "AMP PEAK 10(8P23.1) MUTATED" 
                   TCGA-CG-4300                    TCGA-CG-4301 
"AMP PEAK 10(8P23.1) WILD-TYPE" "AMP PEAK 10(8P23.1) WILD-TYPE" 
                   TCGA-CG-4304                    TCGA-CG-4305 
"AMP PEAK 10(8P23.1) WILD-TYPE"   "AMP PEAK 10(8P23.1) MUTATED" 
                   TCGA-CG-4306                    TCGA-CG-4436 
"AMP PEAK 10(8P23.1) WILD-TYPE" "AMP PEAK 10(8P23.1) WILD-TYPE" 
                   TCGA-CG-4437                    TCGA-CG-4438 
"AMP PEAK 10(8P23.1) WILD-TYPE" "AMP PEAK 10(8P23.1) WILD-TYPE" 
                   TCGA-CG-4440                    TCGA-CG-4441 
"AMP PEAK 10(8P23.1) WILD-TYPE"   "AMP PEAK 10(8P23.1) MUTATED" 
                   TCGA-CG-4443                    TCGA-CG-4444 
"AMP PEAK 10(8P23.1) WILD-TYPE" "AMP PEAK 10(8P23.1) WILD-TYPE" 
                   TCGA-CG-4449                    TCGA-CG-4455 
"AMP PEAK 10(8P23.1) WILD-TYPE"   "AMP PEAK 10(8P23.1) MUTATED" 
                   TCGA-CG-4460                    TCGA-CG-4462 
  "AMP PEAK 10(8P23.1) MUTATED"   "AMP PEAK 10(8P23.1) MUTATED" 
                   TCGA-CG-4465                    TCGA-CG-4466 
"AMP PEAK 10(8P23.1) WILD-TYPE"   "AMP PEAK 10(8P23.1) MUTATED" 
                   TCGA-CG-4469                    TCGA-CG-4472 
  "AMP PEAK 10(8P23.1) MUTATED"   "AMP PEAK 10(8P23.1) MUTATED" 
                   TCGA-CG-4474                    TCGA-CG-4477 
"AMP PEAK 10(8P23.1) WILD-TYPE" "AMP PEAK 10(8P23.1) WILD-TYPE" 
                   TCGA-CG-5716                    TCGA-CG-5717 
  "AMP PEAK 10(8P23.1) MUTATED" "AMP PEAK 10(8P23.1) WILD-TYPE" 
                   TCGA-CG-5718                    TCGA-CG-5719 
"AMP PEAK 10(8P23.1) WILD-TYPE" "AMP PEAK 10(8P23.1) WILD-TYPE" 
                   TCGA-CG-5720                    TCGA-CG-5721 
"AMP PEAK 10(8P23.1) WILD-TYPE" "AMP PEAK 10(8P23.1) WILD-TYPE" 
                   TCGA-CG-5722                    TCGA-CG-5723 
  "AMP PEAK 10(8P23.1) MUTATED" "AMP PEAK 10(8P23.1) WILD-TYPE" 
                   TCGA-CG-5724                    TCGA-CG-5725 
"AMP PEAK 10(8P23.1) WILD-TYPE" "AMP PEAK 10(8P23.1) WILD-TYPE" 
                   TCGA-CG-5726                    TCGA-CG-5727 
  "AMP PEAK 10(8P23.1) MUTATED" "AMP PEAK 10(8P23.1) WILD-TYPE" 
                   TCGA-CG-5728                    TCGA-CG-5730 
  "AMP PEAK 10(8P23.1) MUTATED" "AMP PEAK 10(8P23.1) WILD-TYPE" 
                   TCGA-CG-5732                    TCGA-CG-5733 
"AMP PEAK 10(8P23.1) WILD-TYPE"   "AMP PEAK 10(8P23.1) MUTATED" 
                   TCGA-CG-5734                    TCGA-D7-5577 
"AMP PEAK 10(8P23.1) WILD-TYPE" "AMP PEAK 10(8P23.1) WILD-TYPE" 
                   TCGA-D7-5578                    TCGA-D7-5579 
  "AMP PEAK 10(8P23.1) MUTATED"   "AMP PEAK 10(8P23.1) MUTATED" 
                   TCGA-D7-6518                    TCGA-D7-6519 
"AMP PEAK 10(8P23.1) WILD-TYPE" "AMP PEAK 10(8P23.1) WILD-TYPE" 
                   TCGA-D7-6520                    TCGA-D7-6521 
"AMP PEAK 10(8P23.1) WILD-TYPE" "AMP PEAK 10(8P23.1) WILD-TYPE" 
                   TCGA-D7-6522                    TCGA-D7-6524 
"AMP PEAK 10(8P23.1) WILD-TYPE"   "AMP PEAK 10(8P23.1) MUTATED" 
                   TCGA-D7-6525                    TCGA-D7-6526 
"AMP PEAK 10(8P23.1) WILD-TYPE" "AMP PEAK 10(8P23.1) WILD-TYPE" 
                   TCGA-D7-6527                    TCGA-D7-6528 
  "AMP PEAK 10(8P23.1) MUTATED" "AMP PEAK 10(8P23.1) WILD-TYPE" 
                   TCGA-D7-6815                    TCGA-D7-6817 
"AMP PEAK 10(8P23.1) WILD-TYPE"   "AMP PEAK 10(8P23.1) MUTATED" 
                   TCGA-D7-6818                    TCGA-D7-6820 
  "AMP PEAK 10(8P23.1) MUTATED"   "AMP PEAK 10(8P23.1) MUTATED" 
                   TCGA-D7-6822                    TCGA-EQ-5647 
  "AMP PEAK 10(8P23.1) MUTATED" "AMP PEAK 10(8P23.1) WILD-TYPE" 
                   TCGA-EQ-8122                    TCGA-F1-6177 
"AMP PEAK 10(8P23.1) WILD-TYPE" "AMP PEAK 10(8P23.1) WILD-TYPE" 
                   TCGA-F1-6874                    TCGA-F1-6875 
"AMP PEAK 10(8P23.1) WILD-TYPE" "AMP PEAK 10(8P23.1) WILD-TYPE" 
                   TCGA-FP-7735                    TCGA-FP-7829 
"AMP PEAK 10(8P23.1) WILD-TYPE"   "AMP PEAK 10(8P23.1) MUTATED" 
                   TCGA-FP-7916                    TCGA-FP-7998 
"AMP PEAK 10(8P23.1) WILD-TYPE" "AMP PEAK 10(8P23.1) WILD-TYPE" 
                   TCGA-HJ-7597                    TCGA-IN-7806 
  "AMP PEAK 10(8P23.1) MUTATED" "AMP PEAK 10(8P23.1) WILD-TYPE" 
                   TCGA-IN-7808                    TCGA-IP-7968 
"AMP PEAK 10(8P23.1) WILD-TYPE" "AMP PEAK 10(8P23.1) WILD-TYPE" 
                   TCGA-B7-5816                    TCGA-B7-5818 
  "AMP PEAK 10(8P23.1) MUTATED" "AMP PEAK 10(8P23.1) WILD-TYPE" 
                   TCGA-BR-6452                    TCGA-BR-6455 
  "AMP PEAK 10(8P23.1) MUTATED"   "AMP PEAK 10(8P23.1) MUTATED" 
                   TCGA-BR-6457                    TCGA-BR-6458 
  "AMP PEAK 10(8P23.1) MUTATED"   "AMP PEAK 10(8P23.1) MUTATED" 
                   TCGA-BR-6563                    TCGA-BR-6564 
"AMP PEAK 10(8P23.1) WILD-TYPE" "AMP PEAK 10(8P23.1) WILD-TYPE" 
                   TCGA-BR-6565                    TCGA-BR-6566 
"AMP PEAK 10(8P23.1) WILD-TYPE" "AMP PEAK 10(8P23.1) WILD-TYPE" 
                   TCGA-BR-6705                    TCGA-BR-6706 
  "AMP PEAK 10(8P23.1) MUTATED" "AMP PEAK 10(8P23.1) WILD-TYPE" 
                   TCGA-BR-6707                    TCGA-BR-6709 
  "AMP PEAK 10(8P23.1) MUTATED" "AMP PEAK 10(8P23.1) WILD-TYPE" 
                   TCGA-BR-6710                    TCGA-BR-6801 
"AMP PEAK 10(8P23.1) WILD-TYPE" "AMP PEAK 10(8P23.1) WILD-TYPE" 
                   TCGA-BR-6802                    TCGA-BR-6803 
  "AMP PEAK 10(8P23.1) MUTATED"   "AMP PEAK 10(8P23.1) MUTATED" 
                   TCGA-BR-6852                    TCGA-BR-7196 
  "AMP PEAK 10(8P23.1) MUTATED" "AMP PEAK 10(8P23.1) WILD-TYPE" 
                   TCGA-BR-7197                    TCGA-BR-7703 
"AMP PEAK 10(8P23.1) WILD-TYPE" "AMP PEAK 10(8P23.1) WILD-TYPE" 
                   TCGA-BR-7704                    TCGA-BR-7707 
  "AMP PEAK 10(8P23.1) MUTATED"   "AMP PEAK 10(8P23.1) MUTATED" 
                   TCGA-BR-7715                    TCGA-BR-7716 
"AMP PEAK 10(8P23.1) WILD-TYPE" "AMP PEAK 10(8P23.1) WILD-TYPE" 
                   TCGA-BR-7717                    TCGA-BR-7722 
  "AMP PEAK 10(8P23.1) MUTATED" "AMP PEAK 10(8P23.1) WILD-TYPE" 
                   TCGA-BR-7723                    TCGA-BR-7851 
"AMP PEAK 10(8P23.1) WILD-TYPE" "AMP PEAK 10(8P23.1) WILD-TYPE" 
                   TCGA-BR-7901                    TCGA-BR-7957 
"AMP PEAK 10(8P23.1) WILD-TYPE"   "AMP PEAK 10(8P23.1) MUTATED" 
                   TCGA-BR-7958                    TCGA-BR-7959 
"AMP PEAK 10(8P23.1) WILD-TYPE" "AMP PEAK 10(8P23.1) WILD-TYPE" 
                   TCGA-BR-8059                    TCGA-BR-8060 
"AMP PEAK 10(8P23.1) WILD-TYPE" "AMP PEAK 10(8P23.1) WILD-TYPE" 
                   TCGA-BR-8077                    TCGA-BR-8078 
"AMP PEAK 10(8P23.1) WILD-TYPE" "AMP PEAK 10(8P23.1) WILD-TYPE" 
                   TCGA-BR-8080                    TCGA-BR-8081 
"AMP PEAK 10(8P23.1) WILD-TYPE" "AMP PEAK 10(8P23.1) WILD-TYPE" 
                   TCGA-BR-8284                    TCGA-BR-8285 
"AMP PEAK 10(8P23.1) WILD-TYPE" "AMP PEAK 10(8P23.1) WILD-TYPE" 
                   TCGA-BR-8286                    TCGA-BR-8289 
"AMP PEAK 10(8P23.1) WILD-TYPE" "AMP PEAK 10(8P23.1) WILD-TYPE" 
                   TCGA-BR-8291                    TCGA-BR-8295 
"AMP PEAK 10(8P23.1) WILD-TYPE" "AMP PEAK 10(8P23.1) WILD-TYPE" 
                   TCGA-BR-8296                    TCGA-BR-8297 
"AMP PEAK 10(8P23.1) WILD-TYPE" "AMP PEAK 10(8P23.1) WILD-TYPE" 
                   TCGA-CD-5798                    TCGA-CD-5799 
"AMP PEAK 10(8P23.1) WILD-TYPE"   "AMP PEAK 10(8P23.1) MUTATED" 
                   TCGA-CD-5800                    TCGA-CD-5801 
"AMP PEAK 10(8P23.1) WILD-TYPE" "AMP PEAK 10(8P23.1) WILD-TYPE" 
                   TCGA-CD-5802                    TCGA-CD-5803 
"AMP PEAK 10(8P23.1) WILD-TYPE"   "AMP PEAK 10(8P23.1) MUTATED" 
                   TCGA-CG-4300                    TCGA-CG-4301 
"AMP PEAK 10(8P23.1) WILD-TYPE" "AMP PEAK 10(8P23.1) WILD-TYPE" 
                   TCGA-CG-4304                    TCGA-CG-4305 
"AMP PEAK 10(8P23.1) WILD-TYPE"   "AMP PEAK 10(8P23.1) MUTATED" 
                   TCGA-CG-4306                    TCGA-CG-4436 
"AMP PEAK 10(8P23.1) WILD-TYPE" "AMP PEAK 10(8P23.1) WILD-TYPE" 
                   TCGA-CG-4437                    TCGA-CG-4438 
"AMP PEAK 10(8P23.1) WILD-TYPE" "AMP PEAK 10(8P23.1) WILD-TYPE" 
                   TCGA-CG-4440                    TCGA-CG-4441 
"AMP PEAK 10(8P23.1) WILD-TYPE"   "AMP PEAK 10(8P23.1) MUTATED" 
                   TCGA-CG-4443                    TCGA-CG-4444 
"AMP PEAK 10(8P23.1) WILD-TYPE" "AMP PEAK 10(8P23.1) WILD-TYPE" 
                   TCGA-CG-4449                    TCGA-CG-4455 
"AMP PEAK 10(8P23.1) WILD-TYPE"   "AMP PEAK 10(8P23.1) MUTATED" 
                   TCGA-CG-4460                    TCGA-CG-4462 
  "AMP PEAK 10(8P23.1) MUTATED"   "AMP PEAK 10(8P23.1) MUTATED" 
                   TCGA-CG-4465                    TCGA-CG-4466 
"AMP PEAK 10(8P23.1) WILD-TYPE"   "AMP PEAK 10(8P23.1) MUTATED" 
                   TCGA-CG-4469                    TCGA-CG-4472 
  "AMP PEAK 10(8P23.1) MUTATED"   "AMP PEAK 10(8P23.1) MUTATED" 
                   TCGA-CG-4474                    TCGA-CG-4477 
"AMP PEAK 10(8P23.1) WILD-TYPE" "AMP PEAK 10(8P23.1) WILD-TYPE" 
                   TCGA-CG-5716                    TCGA-CG-5717 
  "AMP PEAK 10(8P23.1) MUTATED" "AMP PEAK 10(8P23.1) WILD-TYPE" 
                   TCGA-CG-5718                    TCGA-CG-5719 
"AMP PEAK 10(8P23.1) WILD-TYPE" "AMP PEAK 10(8P23.1) WILD-TYPE" 
                   TCGA-CG-5720                    TCGA-CG-5721 
"AMP PEAK 10(8P23.1) WILD-TYPE" "AMP PEAK 10(8P23.1) WILD-TYPE" 
                   TCGA-CG-5722                    TCGA-CG-5723 
  "AMP PEAK 10(8P23.1) MUTATED" "AMP PEAK 10(8P23.1) WILD-TYPE" 
                   TCGA-CG-5724                    TCGA-CG-5725 
"AMP PEAK 10(8P23.1) WILD-TYPE" "AMP PEAK 10(8P23.1) WILD-TYPE" 
                   TCGA-CG-5726                    TCGA-CG-5727 
  "AMP PEAK 10(8P23.1) MUTATED" "AMP PEAK 10(8P23.1) WILD-TYPE" 
                   TCGA-CG-5728                    TCGA-CG-5730 
  "AMP PEAK 10(8P23.1) MUTATED" "AMP PEAK 10(8P23.1) WILD-TYPE" 
                   TCGA-CG-5732                    TCGA-CG-5733 
"AMP PEAK 10(8P23.1) WILD-TYPE"   "AMP PEAK 10(8P23.1) MUTATED" 
                   TCGA-CG-5734                    TCGA-D7-5577 
"AMP PEAK 10(8P23.1) WILD-TYPE" "AMP PEAK 10(8P23.1) WILD-TYPE" 
                   TCGA-D7-5578                    TCGA-D7-5579 
  "AMP PEAK 10(8P23.1) MUTATED"   "AMP PEAK 10(8P23.1) MUTATED" 
                   TCGA-D7-6518                    TCGA-D7-6519 
"AMP PEAK 10(8P23.1) WILD-TYPE" "AMP PEAK 10(8P23.1) WILD-TYPE" 
                   TCGA-D7-6520                    TCGA-D7-6521 
"AMP PEAK 10(8P23.1) WILD-TYPE" "AMP PEAK 10(8P23.1) WILD-TYPE" 
                   TCGA-D7-6522                    TCGA-D7-6524 
"AMP PEAK 10(8P23.1) WILD-TYPE"   "AMP PEAK 10(8P23.1) MUTATED" 
                   TCGA-D7-6525                    TCGA-D7-6526 
"AMP PEAK 10(8P23.1) WILD-TYPE" "AMP PEAK 10(8P23.1) WILD-TYPE" 
                   TCGA-D7-6527                    TCGA-D7-6528 
  "AMP PEAK 10(8P23.1) MUTATED" "AMP PEAK 10(8P23.1) WILD-TYPE" 
                   TCGA-D7-6815                    TCGA-D7-6817 
"AMP PEAK 10(8P23.1) WILD-TYPE"   "AMP PEAK 10(8P23.1) MUTATED" 
                   TCGA-D7-6818                    TCGA-D7-6820 
  "AMP PEAK 10(8P23.1) MUTATED"   "AMP PEAK 10(8P23.1) MUTATED" 
                   TCGA-D7-6822                    TCGA-EQ-5647 
  "AMP PEAK 10(8P23.1) MUTATED" "AMP PEAK 10(8P23.1) WILD-TYPE" 
                   TCGA-EQ-8122                    TCGA-F1-6177 
"AMP PEAK 10(8P23.1) WILD-TYPE" "AMP PEAK 10(8P23.1) WILD-TYPE" 
                   TCGA-F1-6874                    TCGA-F1-6875 
"AMP PEAK 10(8P23.1) WILD-TYPE" "AMP PEAK 10(8P23.1) WILD-TYPE" 
                   TCGA-FP-7735                    TCGA-FP-7829 
"AMP PEAK 10(8P23.1) WILD-TYPE"   "AMP PEAK 10(8P23.1) MUTATED" 
                   TCGA-FP-7916                    TCGA-FP-7998 
"AMP PEAK 10(8P23.1) WILD-TYPE" "AMP PEAK 10(8P23.1) WILD-TYPE" 
                   TCGA-HJ-7597                    TCGA-IN-7806 
  "AMP PEAK 10(8P23.1) MUTATED" "AMP PEAK 10(8P23.1) WILD-TYPE" 
                   TCGA-IN-7808                    TCGA-IP-7968 
"AMP PEAK 10(8P23.1) WILD-TYPE" "AMP PEAK 10(8P23.1) WILD-TYPE" 
                   TCGA-B7-5816                    TCGA-B7-5818 
  "AMP PEAK 10(8P23.1) MUTATED" "AMP PEAK 10(8P23.1) WILD-TYPE" 
                   TCGA-BR-6452                    TCGA-BR-6455 
  "AMP PEAK 10(8P23.1) MUTATED"   "AMP PEAK 10(8P23.1) MUTATED" 
                   TCGA-BR-6457                    TCGA-BR-6458 
  "AMP PEAK 10(8P23.1) MUTATED"   "AMP PEAK 10(8P23.1) MUTATED" 
                   TCGA-BR-6563                    TCGA-BR-6564 
"AMP PEAK 10(8P23.1) WILD-TYPE" "AMP PEAK 10(8P23.1) WILD-TYPE" 
                   TCGA-BR-6565                    TCGA-BR-6566 
"AMP PEAK 10(8P23.1) WILD-TYPE" "AMP PEAK 10(8P23.1) WILD-TYPE" 
                   TCGA-BR-6705                    TCGA-BR-6706 
  "AMP PEAK 10(8P23.1) MUTATED" "AMP PEAK 10(8P23.1) WILD-TYPE" 
                   TCGA-BR-6707                    TCGA-BR-6709 
  "AMP PEAK 10(8P23.1) MUTATED" "AMP PEAK 10(8P23.1) WILD-TYPE" 
                   TCGA-BR-6710                    TCGA-BR-6801 
"AMP PEAK 10(8P23.1) WILD-TYPE" "AMP PEAK 10(8P23.1) WILD-TYPE" 
                   TCGA-BR-6802                    TCGA-BR-6803 
  "AMP PEAK 10(8P23.1) MUTATED"   "AMP PEAK 10(8P23.1) MUTATED" 
                   TCGA-BR-6852                    TCGA-BR-7196 
  "AMP PEAK 10(8P23.1) MUTATED" "AMP PEAK 10(8P23.1) WILD-TYPE" 
                   TCGA-BR-7197                    TCGA-BR-7703 
"AMP PEAK 10(8P23.1) WILD-TYPE" "AMP PEAK 10(8P23.1) WILD-TYPE" 
                   TCGA-BR-7704                    TCGA-BR-7707 
  "AMP PEAK 10(8P23.1) MUTATED"   "AMP PEAK 10(8P23.1) MUTATED" 
                   TCGA-BR-7715                    TCGA-BR-7716 
"AMP PEAK 10(8P23.1) WILD-TYPE" "AMP PEAK 10(8P23.1) WILD-TYPE" 
                   TCGA-BR-7717                    TCGA-BR-7722 
  "AMP PEAK 10(8P23.1) MUTATED" "AMP PEAK 10(8P23.1) WILD-TYPE" 
                   TCGA-BR-7723                    TCGA-BR-7851 
"AMP PEAK 10(8P23.1) WILD-TYPE" "AMP PEAK 10(8P23.1) WILD-TYPE" 
                   TCGA-BR-7901                    TCGA-BR-7957 
"AMP PEAK 10(8P23.1) WILD-TYPE"   "AMP PEAK 10(8P23.1) MUTATED" 
                   TCGA-BR-7958                    TCGA-BR-7959 
"AMP PEAK 10(8P23.1) WILD-TYPE" "AMP PEAK 10(8P23.1) WILD-TYPE" 
                   TCGA-BR-8059                    TCGA-BR-8060 
"AMP PEAK 10(8P23.1) WILD-TYPE" "AMP PEAK 10(8P23.1) WILD-TYPE" 
                   TCGA-BR-8077                    TCGA-BR-8078 
"AMP PEAK 10(8P23.1) WILD-TYPE" "AMP PEAK 10(8P23.1) WILD-TYPE" 
                   TCGA-BR-8080                    TCGA-BR-8081 
"AMP PEAK 10(8P23.1) WILD-TYPE" "AMP PEAK 10(8P23.1) WILD-TYPE" 
                   TCGA-BR-8284                    TCGA-BR-8285 
"AMP PEAK 10(8P23.1) WILD-TYPE" "AMP PEAK 10(8P23.1) WILD-TYPE" 
                   TCGA-BR-8286                    TCGA-BR-8289 
"AMP PEAK 10(8P23.1) WILD-TYPE" "AMP PEAK 10(8P23.1) WILD-TYPE" 
                   TCGA-BR-8291                    TCGA-BR-8295 
"AMP PEAK 10(8P23.1) WILD-TYPE" "AMP PEAK 10(8P23.1) WILD-TYPE" 
                   TCGA-BR-8296                    TCGA-BR-8297 
"AMP PEAK 10(8P23.1) WILD-TYPE" "AMP PEAK 10(8P23.1) WILD-TYPE" 
                   TCGA-CD-5798                    TCGA-CD-5799 
"AMP PEAK 10(8P23.1) WILD-TYPE"   "AMP PEAK 10(8P23.1) MUTATED" 
                   TCGA-CD-5800                    TCGA-CD-5801 
"AMP PEAK 10(8P23.1) WILD-TYPE" "AMP PEAK 10(8P23.1) WILD-TYPE" 
                   TCGA-CD-5802                    TCGA-CD-5803 
"AMP PEAK 10(8P23.1) WILD-TYPE"   "AMP PEAK 10(8P23.1) MUTATED" 
                   TCGA-CG-4300                    TCGA-CG-4301 
"AMP PEAK 10(8P23.1) WILD-TYPE" "AMP PEAK 10(8P23.1) WILD-TYPE" 
                   TCGA-CG-4304                    TCGA-CG-4305 
"AMP PEAK 10(8P23.1) WILD-TYPE"   "AMP PEAK 10(8P23.1) MUTATED" 
                   TCGA-CG-4306                    TCGA-CG-4436 
"AMP PEAK 10(8P23.1) WILD-TYPE" "AMP PEAK 10(8P23.1) WILD-TYPE" 
                   TCGA-CG-4437                    TCGA-CG-4438 
"AMP PEAK 10(8P23.1) WILD-TYPE" "AMP PEAK 10(8P23.1) WILD-TYPE" 
                   TCGA-CG-4440                    TCGA-CG-4441 
"AMP PEAK 10(8P23.1) WILD-TYPE"   "AMP PEAK 10(8P23.1) MUTATED" 
                   TCGA-CG-4443                    TCGA-CG-4444 
"AMP PEAK 10(8P23.1) WILD-TYPE" "AMP PEAK 10(8P23.1) WILD-TYPE" 
                   TCGA-CG-4449                    TCGA-CG-4455 
"AMP PEAK 10(8P23.1) WILD-TYPE"   "AMP PEAK 10(8P23.1) MUTATED" 
                   TCGA-CG-4460                    TCGA-CG-4462 
  "AMP PEAK 10(8P23.1) MUTATED"   "AMP PEAK 10(8P23.1) MUTATED" 
                   TCGA-CG-4465                    TCGA-CG-4466 
"AMP PEAK 10(8P23.1) WILD-TYPE"   "AMP PEAK 10(8P23.1) MUTATED" 
                   TCGA-CG-4469                    TCGA-CG-4472 
  "AMP PEAK 10(8P23.1) MUTATED"   "AMP PEAK 10(8P23.1) MUTATED" 
                   TCGA-CG-4474                    TCGA-CG-4477 
"AMP PEAK 10(8P23.1) WILD-TYPE" "AMP PEAK 10(8P23.1) WILD-TYPE" 
                   TCGA-CG-5716                    TCGA-CG-5717 
  "AMP PEAK 10(8P23.1) MUTATED" "AMP PEAK 10(8P23.1) WILD-TYPE" 
                   TCGA-CG-5718                    TCGA-CG-5719 
"AMP PEAK 10(8P23.1) WILD-TYPE" "AMP PEAK 10(8P23.1) WILD-TYPE" 
                   TCGA-CG-5720                    TCGA-CG-5721 
"AMP PEAK 10(8P23.1) WILD-TYPE" "AMP PEAK 10(8P23.1) WILD-TYPE" 
                   TCGA-CG-5722                    TCGA-CG-5723 
  "AMP PEAK 10(8P23.1) MUTATED" "AMP PEAK 10(8P23.1) WILD-TYPE" 
                   TCGA-CG-5724                    TCGA-CG-5725 
"AMP PEAK 10(8P23.1) WILD-TYPE" "AMP PEAK 10(8P23.1) WILD-TYPE" 
                   TCGA-CG-5726                    TCGA-CG-5727 
  "AMP PEAK 10(8P23.1) MUTATED" "AMP PEAK 10(8P23.1) WILD-TYPE" 
                   TCGA-CG-5728                    TCGA-CG-5730 
  "AMP PEAK 10(8P23.1) MUTATED" "AMP PEAK 10(8P23.1) WILD-TYPE" 
                   TCGA-CG-5732                    TCGA-CG-5733 
"AMP PEAK 10(8P23.1) WILD-TYPE"   "AMP PEAK 10(8P23.1) MUTATED" 
                   TCGA-CG-5734                    TCGA-D7-5577 
"AMP PEAK 10(8P23.1) WILD-TYPE" "AMP PEAK 10(8P23.1) WILD-TYPE" 
                   TCGA-D7-5578                    TCGA-D7-5579 
  "AMP PEAK 10(8P23.1) MUTATED"   "AMP PEAK 10(8P23.1) MUTATED" 
                   TCGA-D7-6518                    TCGA-D7-6519 
"AMP PEAK 10(8P23.1) WILD-TYPE" "AMP PEAK 10(8P23.1) WILD-TYPE" 
                   TCGA-D7-6520                    TCGA-D7-6521 
"AMP PEAK 10(8P23.1) WILD-TYPE" "AMP PEAK 10(8P23.1) WILD-TYPE" 
                   TCGA-D7-6522                    TCGA-D7-6524 
"AMP PEAK 10(8P23.1) WILD-TYPE"   "AMP PEAK 10(8P23.1) MUTATED" 
                   TCGA-D7-6525                    TCGA-D7-6526 
"AMP PEAK 10(8P23.1) WILD-TYPE" "AMP PEAK 10(8P23.1) WILD-TYPE" 
                   TCGA-D7-6527                    TCGA-D7-6528 
  "AMP PEAK 10(8P23.1) MUTATED" "AMP PEAK 10(8P23.1) WILD-TYPE" 
                   TCGA-D7-6815                    TCGA-D7-6817 
"AMP PEAK 10(8P23.1) WILD-TYPE"   "AMP PEAK 10(8P23.1) MUTATED" 
                   TCGA-D7-6818                    TCGA-D7-6820 
  "AMP PEAK 10(8P23.1) MUTATED"   "AMP PEAK 10(8P23.1) MUTATED" 
                   TCGA-D7-6822                    TCGA-EQ-5647 
  "AMP PEAK 10(8P23.1) MUTATED" "AMP PEAK 10(8P23.1) WILD-TYPE" 
                   TCGA-EQ-8122                    TCGA-F1-6177 
"AMP PEAK 10(8P23.1) WILD-TYPE" "AMP PEAK 10(8P23.1) WILD-TYPE" 
                   TCGA-F1-6874                    TCGA-F1-6875 
"AMP PEAK 10(8P23.1) WILD-TYPE" "AMP PEAK 10(8P23.1) WILD-TYPE" 
                   TCGA-FP-7735                    TCGA-FP-7829 
"AMP PEAK 10(8P23.1) WILD-TYPE"   "AMP PEAK 10(8P23.1) MUTATED" 
                   TCGA-FP-7916                    TCGA-FP-7998 
"AMP PEAK 10(8P23.1) WILD-TYPE" "AMP PEAK 10(8P23.1) WILD-TYPE" 
                   TCGA-HJ-7597                    TCGA-IN-7806 
  "AMP PEAK 10(8P23.1) MUTATED" "AMP PEAK 10(8P23.1) WILD-TYPE" 
                   TCGA-IN-7808                    TCGA-IP-7968 
"AMP PEAK 10(8P23.1) WILD-TYPE" "AMP PEAK 10(8P23.1) WILD-TYPE" 
[1] "hr=" "1.4"
D10V2, continuous
D10V3, binary
[1] "tbl2"
                               cls
clus                            [,1] [,2]
  AMP PEAK 10(8P23.1) MUTATED     28   31
  AMP PEAK 10(8P23.1) WILD-TYPE   37   65
        clus
vv       AMP PEAK 10(8P23.1) MUTATED AMP PEAK 10(8P23.1) WILD-TYPE
  FEMALE                          28                            37
  MALE                            31                            65
D10V4, multiclass
D10V5, multiclass
    clus
vv   AMP PEAK 10(8P23.1) MUTATED AMP PEAK 10(8P23.1) WILD-TYPE
  T1                           3                             3
  T2                          21                            32
  T3                          21                            38
  T4                           8                            25
D10V6, multiclass
    clus
vv   AMP PEAK 10(8P23.1) MUTATED AMP PEAK 10(8P23.1) WILD-TYPE
  N0                          18                            32
  N1                          20                            37
  N2                           9                            15
  N3                           5                            14
D10V7, multiclass
    clus
vv   AMP PEAK 10(8P23.1) MUTATED AMP PEAK 10(8P23.1) WILD-TYPE
  M0                          51                            81
  M1                           5                            13
  MX                           3                             8
D10V8, multiclass
     clus
vv    AMP PEAK 10(8P23.1) MUTATED AMP PEAK 10(8P23.1) WILD-TYPE
  I                             9                            16
  II                           18                            25
  III                          13                            35
  IV                           10                            19
D10V9, binary
[1] "tbl2"
                               cls
clus                            [,1] [,2]
  AMP PEAK 10(8P23.1) MUTATED     55    4
  AMP PEAK 10(8P23.1) WILD-TYPE  101    1
     clus
vv    AMP PEAK 10(8P23.1) MUTATED AMP PEAK 10(8P23.1) WILD-TYPE
  NO                            4                             1
  YES                          55                           101

Clustering(11) Variable = Amp Peak 11(8q24.21) mutation analysis
D11V1, survival
                    TCGA-B7-5816                     TCGA-B7-5818 
  "AMP PEAK 11(8Q24.21) MUTATED" "AMP PEAK 11(8Q24.21) WILD-TYPE" 
                    TCGA-BR-6452                     TCGA-BR-6455 
  "AMP PEAK 11(8Q24.21) MUTATED"   "AMP PEAK 11(8Q24.21) MUTATED" 
                    TCGA-BR-6457                     TCGA-BR-6458 
  "AMP PEAK 11(8Q24.21) MUTATED" "AMP PEAK 11(8Q24.21) WILD-TYPE" 
                    TCGA-BR-6563                     TCGA-BR-6564 
"AMP PEAK 11(8Q24.21) WILD-TYPE" "AMP PEAK 11(8Q24.21) WILD-TYPE" 
                    TCGA-BR-6565                     TCGA-BR-6566 
  "AMP PEAK 11(8Q24.21) MUTATED" "AMP PEAK 11(8Q24.21) WILD-TYPE" 
                    TCGA-BR-6705                     TCGA-BR-6706 
  "AMP PEAK 11(8Q24.21) MUTATED" "AMP PEAK 11(8Q24.21) WILD-TYPE" 
                    TCGA-BR-6707                     TCGA-BR-6709 
  "AMP PEAK 11(8Q24.21) MUTATED"   "AMP PEAK 11(8Q24.21) MUTATED" 
                    TCGA-BR-6710                     TCGA-BR-6801 
"AMP PEAK 11(8Q24.21) WILD-TYPE"   "AMP PEAK 11(8Q24.21) MUTATED" 
                    TCGA-BR-6802                     TCGA-BR-6803 
  "AMP PEAK 11(8Q24.21) MUTATED"   "AMP PEAK 11(8Q24.21) MUTATED" 
                    TCGA-BR-6852                     TCGA-BR-7196 
  "AMP PEAK 11(8Q24.21) MUTATED" "AMP PEAK 11(8Q24.21) WILD-TYPE" 
                    TCGA-BR-7197                     TCGA-BR-7703 
  "AMP PEAK 11(8Q24.21) MUTATED" "AMP PEAK 11(8Q24.21) WILD-TYPE" 
                    TCGA-BR-7704                     TCGA-BR-7707 
  "AMP PEAK 11(8Q24.21) MUTATED"   "AMP PEAK 11(8Q24.21) MUTATED" 
                    TCGA-BR-7715                     TCGA-BR-7716 
  "AMP PEAK 11(8Q24.21) MUTATED"   "AMP PEAK 11(8Q24.21) MUTATED" 
                    TCGA-BR-7717                     TCGA-BR-7722 
  "AMP PEAK 11(8Q24.21) MUTATED" "AMP PEAK 11(8Q24.21) WILD-TYPE" 
                    TCGA-BR-7723                     TCGA-BR-7851 
  "AMP PEAK 11(8Q24.21) MUTATED" "AMP PEAK 11(8Q24.21) WILD-TYPE" 
                    TCGA-BR-7901                     TCGA-BR-7957 
  "AMP PEAK 11(8Q24.21) MUTATED"   "AMP PEAK 11(8Q24.21) MUTATED" 
                    TCGA-BR-7958                     TCGA-BR-7959 
"AMP PEAK 11(8Q24.21) WILD-TYPE" "AMP PEAK 11(8Q24.21) WILD-TYPE" 
                    TCGA-BR-8059                     TCGA-BR-8060 
"AMP PEAK 11(8Q24.21) WILD-TYPE" "AMP PEAK 11(8Q24.21) WILD-TYPE" 
                    TCGA-BR-8077                     TCGA-BR-8078 
"AMP PEAK 11(8Q24.21) WILD-TYPE" "AMP PEAK 11(8Q24.21) WILD-TYPE" 
                    TCGA-BR-8080                     TCGA-BR-8081 
"AMP PEAK 11(8Q24.21) WILD-TYPE" "AMP PEAK 11(8Q24.21) WILD-TYPE" 
                    TCGA-BR-8284                     TCGA-BR-8285 
"AMP PEAK 11(8Q24.21) WILD-TYPE" "AMP PEAK 11(8Q24.21) WILD-TYPE" 
                    TCGA-BR-8286                     TCGA-BR-8289 
"AMP PEAK 11(8Q24.21) WILD-TYPE" "AMP PEAK 11(8Q24.21) WILD-TYPE" 
                    TCGA-BR-8291                     TCGA-BR-8295 
"AMP PEAK 11(8Q24.21) WILD-TYPE" "AMP PEAK 11(8Q24.21) WILD-TYPE" 
                    TCGA-BR-8296                     TCGA-BR-8297 
"AMP PEAK 11(8Q24.21) WILD-TYPE" "AMP PEAK 11(8Q24.21) WILD-TYPE" 
                    TCGA-CD-5798                     TCGA-CD-5799 
"AMP PEAK 11(8Q24.21) WILD-TYPE" "AMP PEAK 11(8Q24.21) WILD-TYPE" 
                    TCGA-CD-5800                     TCGA-CD-5801 
  "AMP PEAK 11(8Q24.21) MUTATED" "AMP PEAK 11(8Q24.21) WILD-TYPE" 
                    TCGA-CD-5802                     TCGA-CD-5803 
  "AMP PEAK 11(8Q24.21) MUTATED"   "AMP PEAK 11(8Q24.21) MUTATED" 
                    TCGA-CG-4300                     TCGA-CG-4301 
  "AMP PEAK 11(8Q24.21) MUTATED"   "AMP PEAK 11(8Q24.21) MUTATED" 
                    TCGA-CG-4304                     TCGA-CG-4305 
"AMP PEAK 11(8Q24.21) WILD-TYPE"   "AMP PEAK 11(8Q24.21) MUTATED" 
                    TCGA-CG-4306                     TCGA-CG-4436 
"AMP PEAK 11(8Q24.21) WILD-TYPE"   "AMP PEAK 11(8Q24.21) MUTATED" 
                    TCGA-CG-4437                     TCGA-CG-4438 
  "AMP PEAK 11(8Q24.21) MUTATED"   "AMP PEAK 11(8Q24.21) MUTATED" 
                    TCGA-CG-4440                     TCGA-CG-4441 
  "AMP PEAK 11(8Q24.21) MUTATED"   "AMP PEAK 11(8Q24.21) MUTATED" 
                    TCGA-CG-4443                     TCGA-CG-4444 
  "AMP PEAK 11(8Q24.21) MUTATED"   "AMP PEAK 11(8Q24.21) MUTATED" 
                    TCGA-CG-4449                     TCGA-CG-4455 
  "AMP PEAK 11(8Q24.21) MUTATED"   "AMP PEAK 11(8Q24.21) MUTATED" 
                    TCGA-CG-4460                     TCGA-CG-4462 
  "AMP PEAK 11(8Q24.21) MUTATED"   "AMP PEAK 11(8Q24.21) MUTATED" 
                    TCGA-CG-4465                     TCGA-CG-4466 
"AMP PEAK 11(8Q24.21) WILD-TYPE"   "AMP PEAK 11(8Q24.21) MUTATED" 
                    TCGA-CG-4469                     TCGA-CG-4472 
  "AMP PEAK 11(8Q24.21) MUTATED"   "AMP PEAK 11(8Q24.21) MUTATED" 
                    TCGA-CG-4474                     TCGA-CG-4477 
"AMP PEAK 11(8Q24.21) WILD-TYPE" "AMP PEAK 11(8Q24.21) WILD-TYPE" 
                    TCGA-CG-5716                     TCGA-CG-5717 
"AMP PEAK 11(8Q24.21) WILD-TYPE"   "AMP PEAK 11(8Q24.21) MUTATED" 
                    TCGA-CG-5718                     TCGA-CG-5719 
  "AMP PEAK 11(8Q24.21) MUTATED" "AMP PEAK 11(8Q24.21) WILD-TYPE" 
                    TCGA-CG-5720                     TCGA-CG-5721 
"AMP PEAK 11(8Q24.21) WILD-TYPE" "AMP PEAK 11(8Q24.21) WILD-TYPE" 
                    TCGA-CG-5722                     TCGA-CG-5723 
  "AMP PEAK 11(8Q24.21) MUTATED" "AMP PEAK 11(8Q24.21) WILD-TYPE" 
                    TCGA-CG-5724                     TCGA-CG-5725 
  "AMP PEAK 11(8Q24.21) MUTATED" "AMP PEAK 11(8Q24.21) WILD-TYPE" 
                    TCGA-CG-5726                     TCGA-CG-5727 
  "AMP PEAK 11(8Q24.21) MUTATED"   "AMP PEAK 11(8Q24.21) MUTATED" 
                    TCGA-CG-5728                     TCGA-CG-5730 
  "AMP PEAK 11(8Q24.21) MUTATED"   "AMP PEAK 11(8Q24.21) MUTATED" 
                    TCGA-CG-5732                     TCGA-CG-5733 
  "AMP PEAK 11(8Q24.21) MUTATED"   "AMP PEAK 11(8Q24.21) MUTATED" 
                    TCGA-CG-5734                     TCGA-D7-5577 
  "AMP PEAK 11(8Q24.21) MUTATED" "AMP PEAK 11(8Q24.21) WILD-TYPE" 
                    TCGA-D7-5578                     TCGA-D7-5579 
  "AMP PEAK 11(8Q24.21) MUTATED"   "AMP PEAK 11(8Q24.21) MUTATED" 
                    TCGA-D7-6518                     TCGA-D7-6519 
  "AMP PEAK 11(8Q24.21) MUTATED" "AMP PEAK 11(8Q24.21) WILD-TYPE" 
                    TCGA-D7-6520                     TCGA-D7-6521 
  "AMP PEAK 11(8Q24.21) MUTATED" "AMP PEAK 11(8Q24.21) WILD-TYPE" 
                    TCGA-D7-6522                     TCGA-D7-6524 
"AMP PEAK 11(8Q24.21) WILD-TYPE"   "AMP PEAK 11(8Q24.21) MUTATED" 
                    TCGA-D7-6525                     TCGA-D7-6526 
  "AMP PEAK 11(8Q24.21) MUTATED"   "AMP PEAK 11(8Q24.21) MUTATED" 
                    TCGA-D7-6527                     TCGA-D7-6528 
"AMP PEAK 11(8Q24.21) WILD-TYPE"   "AMP PEAK 11(8Q24.21) MUTATED" 
                    TCGA-D7-6815                     TCGA-D7-6817 
  "AMP PEAK 11(8Q24.21) MUTATED"   "AMP PEAK 11(8Q24.21) MUTATED" 
                    TCGA-D7-6818                     TCGA-D7-6820 
  "AMP PEAK 11(8Q24.21) MUTATED"   "AMP PEAK 11(8Q24.21) MUTATED" 
                    TCGA-D7-6822                     TCGA-EQ-5647 
  "AMP PEAK 11(8Q24.21) MUTATED"   "AMP PEAK 11(8Q24.21) MUTATED" 
                    TCGA-EQ-8122                     TCGA-F1-6177 
"AMP PEAK 11(8Q24.21) WILD-TYPE"   "AMP PEAK 11(8Q24.21) MUTATED" 
                    TCGA-F1-6874                     TCGA-F1-6875 
"AMP PEAK 11(8Q24.21) WILD-TYPE"   "AMP PEAK 11(8Q24.21) MUTATED" 
                    TCGA-FP-7735                     TCGA-FP-7829 
  "AMP PEAK 11(8Q24.21) MUTATED"   "AMP PEAK 11(8Q24.21) MUTATED" 
                    TCGA-FP-7916                     TCGA-FP-7998 
"AMP PEAK 11(8Q24.21) WILD-TYPE" "AMP PEAK 11(8Q24.21) WILD-TYPE" 
                    TCGA-HJ-7597                     TCGA-IN-7806 
  "AMP PEAK 11(8Q24.21) MUTATED" "AMP PEAK 11(8Q24.21) WILD-TYPE" 
                    TCGA-IN-7808                     TCGA-IP-7968 
  "AMP PEAK 11(8Q24.21) MUTATED"   "AMP PEAK 11(8Q24.21) MUTATED" 
                    TCGA-B7-5816                     TCGA-B7-5818 
  "AMP PEAK 11(8Q24.21) MUTATED" "AMP PEAK 11(8Q24.21) WILD-TYPE" 
                    TCGA-BR-6452                     TCGA-BR-6455 
  "AMP PEAK 11(8Q24.21) MUTATED"   "AMP PEAK 11(8Q24.21) MUTATED" 
                    TCGA-BR-6457                     TCGA-BR-6458 
  "AMP PEAK 11(8Q24.21) MUTATED" "AMP PEAK 11(8Q24.21) WILD-TYPE" 
                    TCGA-BR-6563                     TCGA-BR-6564 
"AMP PEAK 11(8Q24.21) WILD-TYPE" "AMP PEAK 11(8Q24.21) WILD-TYPE" 
                    TCGA-BR-6565                     TCGA-BR-6566 
  "AMP PEAK 11(8Q24.21) MUTATED" "AMP PEAK 11(8Q24.21) WILD-TYPE" 
                    TCGA-BR-6705                     TCGA-BR-6706 
  "AMP PEAK 11(8Q24.21) MUTATED" "AMP PEAK 11(8Q24.21) WILD-TYPE" 
                    TCGA-BR-6707                     TCGA-BR-6709 
  "AMP PEAK 11(8Q24.21) MUTATED"   "AMP PEAK 11(8Q24.21) MUTATED" 
                    TCGA-BR-6710                     TCGA-BR-6801 
"AMP PEAK 11(8Q24.21) WILD-TYPE"   "AMP PEAK 11(8Q24.21) MUTATED" 
                    TCGA-BR-6802                     TCGA-BR-6803 
  "AMP PEAK 11(8Q24.21) MUTATED"   "AMP PEAK 11(8Q24.21) MUTATED" 
                    TCGA-BR-6852                     TCGA-BR-7196 
  "AMP PEAK 11(8Q24.21) MUTATED" "AMP PEAK 11(8Q24.21) WILD-TYPE" 
                    TCGA-BR-7197                     TCGA-BR-7703 
  "AMP PEAK 11(8Q24.21) MUTATED" "AMP PEAK 11(8Q24.21) WILD-TYPE" 
                    TCGA-BR-7704                     TCGA-BR-7707 
  "AMP PEAK 11(8Q24.21) MUTATED"   "AMP PEAK 11(8Q24.21) MUTATED" 
                    TCGA-BR-7715                     TCGA-BR-7716 
  "AMP PEAK 11(8Q24.21) MUTATED"   "AMP PEAK 11(8Q24.21) MUTATED" 
                    TCGA-BR-7717                     TCGA-BR-7722 
  "AMP PEAK 11(8Q24.21) MUTATED" "AMP PEAK 11(8Q24.21) WILD-TYPE" 
                    TCGA-BR-7723                     TCGA-BR-7851 
  "AMP PEAK 11(8Q24.21) MUTATED" "AMP PEAK 11(8Q24.21) WILD-TYPE" 
                    TCGA-BR-7901                     TCGA-BR-7957 
  "AMP PEAK 11(8Q24.21) MUTATED"   "AMP PEAK 11(8Q24.21) MUTATED" 
                    TCGA-BR-7958                     TCGA-BR-7959 
"AMP PEAK 11(8Q24.21) WILD-TYPE" "AMP PEAK 11(8Q24.21) WILD-TYPE" 
                    TCGA-BR-8059                     TCGA-BR-8060 
"AMP PEAK 11(8Q24.21) WILD-TYPE" "AMP PEAK 11(8Q24.21) WILD-TYPE" 
                    TCGA-BR-8077                     TCGA-BR-8078 
"AMP PEAK 11(8Q24.21) WILD-TYPE" "AMP PEAK 11(8Q24.21) WILD-TYPE" 
                    TCGA-BR-8080                     TCGA-BR-8081 
"AMP PEAK 11(8Q24.21) WILD-TYPE" "AMP PEAK 11(8Q24.21) WILD-TYPE" 
                    TCGA-BR-8284                     TCGA-BR-8285 
"AMP PEAK 11(8Q24.21) WILD-TYPE" "AMP PEAK 11(8Q24.21) WILD-TYPE" 
                    TCGA-BR-8286                     TCGA-BR-8289 
"AMP PEAK 11(8Q24.21) WILD-TYPE" "AMP PEAK 11(8Q24.21) WILD-TYPE" 
                    TCGA-BR-8291                     TCGA-BR-8295 
"AMP PEAK 11(8Q24.21) WILD-TYPE" "AMP PEAK 11(8Q24.21) WILD-TYPE" 
                    TCGA-BR-8296                     TCGA-BR-8297 
"AMP PEAK 11(8Q24.21) WILD-TYPE" "AMP PEAK 11(8Q24.21) WILD-TYPE" 
                    TCGA-CD-5798                     TCGA-CD-5799 
"AMP PEAK 11(8Q24.21) WILD-TYPE" "AMP PEAK 11(8Q24.21) WILD-TYPE" 
                    TCGA-CD-5800                     TCGA-CD-5801 
  "AMP PEAK 11(8Q24.21) MUTATED" "AMP PEAK 11(8Q24.21) WILD-TYPE" 
                    TCGA-CD-5802                     TCGA-CD-5803 
  "AMP PEAK 11(8Q24.21) MUTATED"   "AMP PEAK 11(8Q24.21) MUTATED" 
                    TCGA-CG-4300                     TCGA-CG-4301 
  "AMP PEAK 11(8Q24.21) MUTATED"   "AMP PEAK 11(8Q24.21) MUTATED" 
                    TCGA-CG-4304                     TCGA-CG-4305 
"AMP PEAK 11(8Q24.21) WILD-TYPE"   "AMP PEAK 11(8Q24.21) MUTATED" 
                    TCGA-CG-4306                     TCGA-CG-4436 
"AMP PEAK 11(8Q24.21) WILD-TYPE"   "AMP PEAK 11(8Q24.21) MUTATED" 
                    TCGA-CG-4437                     TCGA-CG-4438 
  "AMP PEAK 11(8Q24.21) MUTATED"   "AMP PEAK 11(8Q24.21) MUTATED" 
                    TCGA-CG-4440                     TCGA-CG-4441 
  "AMP PEAK 11(8Q24.21) MUTATED"   "AMP PEAK 11(8Q24.21) MUTATED" 
                    TCGA-CG-4443                     TCGA-CG-4444 
  "AMP PEAK 11(8Q24.21) MUTATED"   "AMP PEAK 11(8Q24.21) MUTATED" 
                    TCGA-CG-4449                     TCGA-CG-4455 
  "AMP PEAK 11(8Q24.21) MUTATED"   "AMP PEAK 11(8Q24.21) MUTATED" 
                    TCGA-CG-4460                     TCGA-CG-4462 
  "AMP PEAK 11(8Q24.21) MUTATED"   "AMP PEAK 11(8Q24.21) MUTATED" 
                    TCGA-CG-4465                     TCGA-CG-4466 
"AMP PEAK 11(8Q24.21) WILD-TYPE"   "AMP PEAK 11(8Q24.21) MUTATED" 
                    TCGA-CG-4469                     TCGA-CG-4472 
  "AMP PEAK 11(8Q24.21) MUTATED"   "AMP PEAK 11(8Q24.21) MUTATED" 
                    TCGA-CG-4474                     TCGA-CG-4477 
"AMP PEAK 11(8Q24.21) WILD-TYPE" "AMP PEAK 11(8Q24.21) WILD-TYPE" 
                    TCGA-CG-5716                     TCGA-CG-5717 
"AMP PEAK 11(8Q24.21) WILD-TYPE"   "AMP PEAK 11(8Q24.21) MUTATED" 
                    TCGA-CG-5718                     TCGA-CG-5719 
  "AMP PEAK 11(8Q24.21) MUTATED" "AMP PEAK 11(8Q24.21) WILD-TYPE" 
                    TCGA-CG-5720                     TCGA-CG-5721 
"AMP PEAK 11(8Q24.21) WILD-TYPE" "AMP PEAK 11(8Q24.21) WILD-TYPE" 
                    TCGA-CG-5722                     TCGA-CG-5723 
  "AMP PEAK 11(8Q24.21) MUTATED" "AMP PEAK 11(8Q24.21) WILD-TYPE" 
                    TCGA-CG-5724                     TCGA-CG-5725 
  "AMP PEAK 11(8Q24.21) MUTATED" "AMP PEAK 11(8Q24.21) WILD-TYPE" 
                    TCGA-CG-5726                     TCGA-CG-5727 
  "AMP PEAK 11(8Q24.21) MUTATED"   "AMP PEAK 11(8Q24.21) MUTATED" 
                    TCGA-CG-5728                     TCGA-CG-5730 
  "AMP PEAK 11(8Q24.21) MUTATED"   "AMP PEAK 11(8Q24.21) MUTATED" 
                    TCGA-CG-5732                     TCGA-CG-5733 
  "AMP PEAK 11(8Q24.21) MUTATED"   "AMP PEAK 11(8Q24.21) MUTATED" 
                    TCGA-CG-5734                     TCGA-D7-5577 
  "AMP PEAK 11(8Q24.21) MUTATED" "AMP PEAK 11(8Q24.21) WILD-TYPE" 
                    TCGA-D7-5578                     TCGA-D7-5579 
  "AMP PEAK 11(8Q24.21) MUTATED"   "AMP PEAK 11(8Q24.21) MUTATED" 
                    TCGA-D7-6518                     TCGA-D7-6519 
  "AMP PEAK 11(8Q24.21) MUTATED" "AMP PEAK 11(8Q24.21) WILD-TYPE" 
                    TCGA-D7-6520                     TCGA-D7-6521 
  "AMP PEAK 11(8Q24.21) MUTATED" "AMP PEAK 11(8Q24.21) WILD-TYPE" 
                    TCGA-D7-6522                     TCGA-D7-6524 
"AMP PEAK 11(8Q24.21) WILD-TYPE"   "AMP PEAK 11(8Q24.21) MUTATED" 
                    TCGA-D7-6525                     TCGA-D7-6526 
  "AMP PEAK 11(8Q24.21) MUTATED"   "AMP PEAK 11(8Q24.21) MUTATED" 
                    TCGA-D7-6527                     TCGA-D7-6528 
"AMP PEAK 11(8Q24.21) WILD-TYPE"   "AMP PEAK 11(8Q24.21) MUTATED" 
                    TCGA-D7-6815                     TCGA-D7-6817 
  "AMP PEAK 11(8Q24.21) MUTATED"   "AMP PEAK 11(8Q24.21) MUTATED" 
                    TCGA-D7-6818                     TCGA-D7-6820 
  "AMP PEAK 11(8Q24.21) MUTATED"   "AMP PEAK 11(8Q24.21) MUTATED" 
                    TCGA-D7-6822                     TCGA-EQ-5647 
  "AMP PEAK 11(8Q24.21) MUTATED"   "AMP PEAK 11(8Q24.21) MUTATED" 
                    TCGA-EQ-8122                     TCGA-F1-6177 
"AMP PEAK 11(8Q24.21) WILD-TYPE"   "AMP PEAK 11(8Q24.21) MUTATED" 
                    TCGA-F1-6874                     TCGA-F1-6875 
"AMP PEAK 11(8Q24.21) WILD-TYPE"   "AMP PEAK 11(8Q24.21) MUTATED" 
                    TCGA-FP-7735                     TCGA-FP-7829 
  "AMP PEAK 11(8Q24.21) MUTATED"   "AMP PEAK 11(8Q24.21) MUTATED" 
                    TCGA-FP-7916                     TCGA-FP-7998 
"AMP PEAK 11(8Q24.21) WILD-TYPE" "AMP PEAK 11(8Q24.21) WILD-TYPE" 
                    TCGA-HJ-7597                     TCGA-IN-7806 
  "AMP PEAK 11(8Q24.21) MUTATED" "AMP PEAK 11(8Q24.21) WILD-TYPE" 
                    TCGA-IN-7808                     TCGA-IP-7968 
  "AMP PEAK 11(8Q24.21) MUTATED"   "AMP PEAK 11(8Q24.21) MUTATED" 
                    TCGA-B7-5816                     TCGA-B7-5818 
  "AMP PEAK 11(8Q24.21) MUTATED" "AMP PEAK 11(8Q24.21) WILD-TYPE" 
                    TCGA-BR-6452                     TCGA-BR-6455 
  "AMP PEAK 11(8Q24.21) MUTATED"   "AMP PEAK 11(8Q24.21) MUTATED" 
                    TCGA-BR-6457                     TCGA-BR-6458 
  "AMP PEAK 11(8Q24.21) MUTATED" "AMP PEAK 11(8Q24.21) WILD-TYPE" 
                    TCGA-BR-6563                     TCGA-BR-6564 
"AMP PEAK 11(8Q24.21) WILD-TYPE" "AMP PEAK 11(8Q24.21) WILD-TYPE" 
                    TCGA-BR-6565                     TCGA-BR-6566 
  "AMP PEAK 11(8Q24.21) MUTATED" "AMP PEAK 11(8Q24.21) WILD-TYPE" 
                    TCGA-BR-6705                     TCGA-BR-6706 
  "AMP PEAK 11(8Q24.21) MUTATED" "AMP PEAK 11(8Q24.21) WILD-TYPE" 
                    TCGA-BR-6707                     TCGA-BR-6709 
  "AMP PEAK 11(8Q24.21) MUTATED"   "AMP PEAK 11(8Q24.21) MUTATED" 
                    TCGA-BR-6710                     TCGA-BR-6801 
"AMP PEAK 11(8Q24.21) WILD-TYPE"   "AMP PEAK 11(8Q24.21) MUTATED" 
                    TCGA-BR-6802                     TCGA-BR-6803 
  "AMP PEAK 11(8Q24.21) MUTATED"   "AMP PEAK 11(8Q24.21) MUTATED" 
                    TCGA-BR-6852                     TCGA-BR-7196 
  "AMP PEAK 11(8Q24.21) MUTATED" "AMP PEAK 11(8Q24.21) WILD-TYPE" 
                    TCGA-BR-7197                     TCGA-BR-7703 
  "AMP PEAK 11(8Q24.21) MUTATED" "AMP PEAK 11(8Q24.21) WILD-TYPE" 
                    TCGA-BR-7704                     TCGA-BR-7707 
  "AMP PEAK 11(8Q24.21) MUTATED"   "AMP PEAK 11(8Q24.21) MUTATED" 
                    TCGA-BR-7715                     TCGA-BR-7716 
  "AMP PEAK 11(8Q24.21) MUTATED"   "AMP PEAK 11(8Q24.21) MUTATED" 
                    TCGA-BR-7717                     TCGA-BR-7722 
  "AMP PEAK 11(8Q24.21) MUTATED" "AMP PEAK 11(8Q24.21) WILD-TYPE" 
                    TCGA-BR-7723                     TCGA-BR-7851 
  "AMP PEAK 11(8Q24.21) MUTATED" "AMP PEAK 11(8Q24.21) WILD-TYPE" 
                    TCGA-BR-7901                     TCGA-BR-7957 
  "AMP PEAK 11(8Q24.21) MUTATED"   "AMP PEAK 11(8Q24.21) MUTATED" 
                    TCGA-BR-7958                     TCGA-BR-7959 
"AMP PEAK 11(8Q24.21) WILD-TYPE" "AMP PEAK 11(8Q24.21) WILD-TYPE" 
                    TCGA-BR-8059                     TCGA-BR-8060 
"AMP PEAK 11(8Q24.21) WILD-TYPE" "AMP PEAK 11(8Q24.21) WILD-TYPE" 
                    TCGA-BR-8077                     TCGA-BR-8078 
"AMP PEAK 11(8Q24.21) WILD-TYPE" "AMP PEAK 11(8Q24.21) WILD-TYPE" 
                    TCGA-BR-8080                     TCGA-BR-8081 
"AMP PEAK 11(8Q24.21) WILD-TYPE" "AMP PEAK 11(8Q24.21) WILD-TYPE" 
                    TCGA-BR-8284                     TCGA-BR-8285 
"AMP PEAK 11(8Q24.21) WILD-TYPE" "AMP PEAK 11(8Q24.21) WILD-TYPE" 
                    TCGA-BR-8286                     TCGA-BR-8289 
"AMP PEAK 11(8Q24.21) WILD-TYPE" "AMP PEAK 11(8Q24.21) WILD-TYPE" 
                    TCGA-BR-8291                     TCGA-BR-8295 
"AMP PEAK 11(8Q24.21) WILD-TYPE" "AMP PEAK 11(8Q24.21) WILD-TYPE" 
                    TCGA-BR-8296                     TCGA-BR-8297 
"AMP PEAK 11(8Q24.21) WILD-TYPE" "AMP PEAK 11(8Q24.21) WILD-TYPE" 
                    TCGA-CD-5798                     TCGA-CD-5799 
"AMP PEAK 11(8Q24.21) WILD-TYPE" "AMP PEAK 11(8Q24.21) WILD-TYPE" 
                    TCGA-CD-5800                     TCGA-CD-5801 
  "AMP PEAK 11(8Q24.21) MUTATED" "AMP PEAK 11(8Q24.21) WILD-TYPE" 
                    TCGA-CD-5802                     TCGA-CD-5803 
  "AMP PEAK 11(8Q24.21) MUTATED"   "AMP PEAK 11(8Q24.21) MUTATED" 
                    TCGA-CG-4300                     TCGA-CG-4301 
  "AMP PEAK 11(8Q24.21) MUTATED"   "AMP PEAK 11(8Q24.21) MUTATED" 
                    TCGA-CG-4304                     TCGA-CG-4305 
"AMP PEAK 11(8Q24.21) WILD-TYPE"   "AMP PEAK 11(8Q24.21) MUTATED" 
                    TCGA-CG-4306                     TCGA-CG-4436 
"AMP PEAK 11(8Q24.21) WILD-TYPE"   "AMP PEAK 11(8Q24.21) MUTATED" 
                    TCGA-CG-4437                     TCGA-CG-4438 
  "AMP PEAK 11(8Q24.21) MUTATED"   "AMP PEAK 11(8Q24.21) MUTATED" 
                    TCGA-CG-4440                     TCGA-CG-4441 
  "AMP PEAK 11(8Q24.21) MUTATED"   "AMP PEAK 11(8Q24.21) MUTATED" 
                    TCGA-CG-4443                     TCGA-CG-4444 
  "AMP PEAK 11(8Q24.21) MUTATED"   "AMP PEAK 11(8Q24.21) MUTATED" 
                    TCGA-CG-4449                     TCGA-CG-4455 
  "AMP PEAK 11(8Q24.21) MUTATED"   "AMP PEAK 11(8Q24.21) MUTATED" 
                    TCGA-CG-4460                     TCGA-CG-4462 
  "AMP PEAK 11(8Q24.21) MUTATED"   "AMP PEAK 11(8Q24.21) MUTATED" 
                    TCGA-CG-4465                     TCGA-CG-4466 
"AMP PEAK 11(8Q24.21) WILD-TYPE"   "AMP PEAK 11(8Q24.21) MUTATED" 
                    TCGA-CG-4469                     TCGA-CG-4472 
  "AMP PEAK 11(8Q24.21) MUTATED"   "AMP PEAK 11(8Q24.21) MUTATED" 
                    TCGA-CG-4474                     TCGA-CG-4477 
"AMP PEAK 11(8Q24.21) WILD-TYPE" "AMP PEAK 11(8Q24.21) WILD-TYPE" 
                    TCGA-CG-5716                     TCGA-CG-5717 
"AMP PEAK 11(8Q24.21) WILD-TYPE"   "AMP PEAK 11(8Q24.21) MUTATED" 
                    TCGA-CG-5718                     TCGA-CG-5719 
  "AMP PEAK 11(8Q24.21) MUTATED" "AMP PEAK 11(8Q24.21) WILD-TYPE" 
                    TCGA-CG-5720                     TCGA-CG-5721 
"AMP PEAK 11(8Q24.21) WILD-TYPE" "AMP PEAK 11(8Q24.21) WILD-TYPE" 
                    TCGA-CG-5722                     TCGA-CG-5723 
  "AMP PEAK 11(8Q24.21) MUTATED" "AMP PEAK 11(8Q24.21) WILD-TYPE" 
                    TCGA-CG-5724                     TCGA-CG-5725 
  "AMP PEAK 11(8Q24.21) MUTATED" "AMP PEAK 11(8Q24.21) WILD-TYPE" 
                    TCGA-CG-5726                     TCGA-CG-5727 
  "AMP PEAK 11(8Q24.21) MUTATED"   "AMP PEAK 11(8Q24.21) MUTATED" 
                    TCGA-CG-5728                     TCGA-CG-5730 
  "AMP PEAK 11(8Q24.21) MUTATED"   "AMP PEAK 11(8Q24.21) MUTATED" 
                    TCGA-CG-5732                     TCGA-CG-5733 
  "AMP PEAK 11(8Q24.21) MUTATED"   "AMP PEAK 11(8Q24.21) MUTATED" 
                    TCGA-CG-5734                     TCGA-D7-5577 
  "AMP PEAK 11(8Q24.21) MUTATED" "AMP PEAK 11(8Q24.21) WILD-TYPE" 
                    TCGA-D7-5578                     TCGA-D7-5579 
  "AMP PEAK 11(8Q24.21) MUTATED"   "AMP PEAK 11(8Q24.21) MUTATED" 
                    TCGA-D7-6518                     TCGA-D7-6519 
  "AMP PEAK 11(8Q24.21) MUTATED" "AMP PEAK 11(8Q24.21) WILD-TYPE" 
                    TCGA-D7-6520                     TCGA-D7-6521 
  "AMP PEAK 11(8Q24.21) MUTATED" "AMP PEAK 11(8Q24.21) WILD-TYPE" 
                    TCGA-D7-6522                     TCGA-D7-6524 
"AMP PEAK 11(8Q24.21) WILD-TYPE"   "AMP PEAK 11(8Q24.21) MUTATED" 
                    TCGA-D7-6525                     TCGA-D7-6526 
  "AMP PEAK 11(8Q24.21) MUTATED"   "AMP PEAK 11(8Q24.21) MUTATED" 
                    TCGA-D7-6527                     TCGA-D7-6528 
"AMP PEAK 11(8Q24.21) WILD-TYPE"   "AMP PEAK 11(8Q24.21) MUTATED" 
                    TCGA-D7-6815                     TCGA-D7-6817 
  "AMP PEAK 11(8Q24.21) MUTATED"   "AMP PEAK 11(8Q24.21) MUTATED" 
                    TCGA-D7-6818                     TCGA-D7-6820 
  "AMP PEAK 11(8Q24.21) MUTATED"   "AMP PEAK 11(8Q24.21) MUTATED" 
                    TCGA-D7-6822                     TCGA-EQ-5647 
  "AMP PEAK 11(8Q24.21) MUTATED"   "AMP PEAK 11(8Q24.21) MUTATED" 
                    TCGA-EQ-8122                     TCGA-F1-6177 
"AMP PEAK 11(8Q24.21) WILD-TYPE"   "AMP PEAK 11(8Q24.21) MUTATED" 
                    TCGA-F1-6874                     TCGA-F1-6875 
"AMP PEAK 11(8Q24.21) WILD-TYPE"   "AMP PEAK 11(8Q24.21) MUTATED" 
                    TCGA-FP-7735                     TCGA-FP-7829 
  "AMP PEAK 11(8Q24.21) MUTATED"   "AMP PEAK 11(8Q24.21) MUTATED" 
                    TCGA-FP-7916                     TCGA-FP-7998 
"AMP PEAK 11(8Q24.21) WILD-TYPE" "AMP PEAK 11(8Q24.21) WILD-TYPE" 
                    TCGA-HJ-7597                     TCGA-IN-7806 
  "AMP PEAK 11(8Q24.21) MUTATED" "AMP PEAK 11(8Q24.21) WILD-TYPE" 
                    TCGA-IN-7808                     TCGA-IP-7968 
  "AMP PEAK 11(8Q24.21) MUTATED"   "AMP PEAK 11(8Q24.21) MUTATED" 
[1] "hr=" "1.3"
D11V2, continuous
D11V3, binary
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  AMP PEAK 11(8Q24.21) MUTATED     39   63
  AMP PEAK 11(8Q24.21) WILD-TYPE   26   33
        clus
vv       AMP PEAK 11(8Q24.21) MUTATED AMP PEAK 11(8Q24.21) WILD-TYPE
  FEMALE                           39                             26
  MALE                             63                             33
D11V4, multiclass
D11V5, multiclass
    clus
vv   AMP PEAK 11(8Q24.21) MUTATED AMP PEAK 11(8Q24.21) WILD-TYPE
  T1                            5                              1
  T2                           36                             17
  T3                           41                             18
  T4                           11                             22
D11V6, multiclass
    clus
vv   AMP PEAK 11(8Q24.21) MUTATED AMP PEAK 11(8Q24.21) WILD-TYPE
  N0                           31                             19
  N1                           33                             24
  N2                           18                              6
  N3                           10                              9
D11V7, multiclass
    clus
vv   AMP PEAK 11(8Q24.21) MUTATED AMP PEAK 11(8Q24.21) WILD-TYPE
  M0                           84                             48
  M1                           10                              8
  MX                            8                              3
D11V8, multiclass
     clus
vv    AMP PEAK 11(8Q24.21) MUTATED AMP PEAK 11(8Q24.21) WILD-TYPE
  I                             16                              9
  II                            29                             14
  III                           25                             23
  IV                            18                             11
D11V9, binary
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  AMP PEAK 11(8Q24.21) MUTATED     99    3
  AMP PEAK 11(8Q24.21) WILD-TYPE   57    2
     clus
vv    AMP PEAK 11(8Q24.21) MUTATED AMP PEAK 11(8Q24.21) WILD-TYPE
  NO                             3                              2
  YES                           99                             57

Clustering(12) Variable = Amp Peak 12(9p24.1) mutation analysis
D12V1, survival
                   TCGA-B7-5816                    TCGA-B7-5818 
"AMP PEAK 12(9P24.1) WILD-TYPE" "AMP PEAK 12(9P24.1) WILD-TYPE" 
                   TCGA-BR-6452                    TCGA-BR-6455 
"AMP PEAK 12(9P24.1) WILD-TYPE" "AMP PEAK 12(9P24.1) WILD-TYPE" 
                   TCGA-BR-6457                    TCGA-BR-6458 
"AMP PEAK 12(9P24.1) WILD-TYPE" "AMP PEAK 12(9P24.1) WILD-TYPE" 
                   TCGA-BR-6563                    TCGA-BR-6564 
"AMP PEAK 12(9P24.1) WILD-TYPE" "AMP PEAK 12(9P24.1) WILD-TYPE" 
                   TCGA-BR-6565                    TCGA-BR-6566 
"AMP PEAK 12(9P24.1) WILD-TYPE" "AMP PEAK 12(9P24.1) WILD-TYPE" 
                   TCGA-BR-6705                    TCGA-BR-6706 
"AMP PEAK 12(9P24.1) WILD-TYPE"   "AMP PEAK 12(9P24.1) MUTATED" 
                   TCGA-BR-6707                    TCGA-BR-6709 
  "AMP PEAK 12(9P24.1) MUTATED"   "AMP PEAK 12(9P24.1) MUTATED" 
                   TCGA-BR-6710                    TCGA-BR-6801 
"AMP PEAK 12(9P24.1) WILD-TYPE" "AMP PEAK 12(9P24.1) WILD-TYPE" 
                   TCGA-BR-6802                    TCGA-BR-6803 
"AMP PEAK 12(9P24.1) WILD-TYPE" "AMP PEAK 12(9P24.1) WILD-TYPE" 
                   TCGA-BR-6852                    TCGA-BR-7196 
"AMP PEAK 12(9P24.1) WILD-TYPE" "AMP PEAK 12(9P24.1) WILD-TYPE" 
                   TCGA-BR-7197                    TCGA-BR-7703 
"AMP PEAK 12(9P24.1) WILD-TYPE" "AMP PEAK 12(9P24.1) WILD-TYPE" 
                   TCGA-BR-7704                    TCGA-BR-7707 
"AMP PEAK 12(9P24.1) WILD-TYPE"   "AMP PEAK 12(9P24.1) MUTATED" 
                   TCGA-BR-7715                    TCGA-BR-7716 
"AMP PEAK 12(9P24.1) WILD-TYPE" "AMP PEAK 12(9P24.1) WILD-TYPE" 
                   TCGA-BR-7717                    TCGA-BR-7722 
"AMP PEAK 12(9P24.1) WILD-TYPE" "AMP PEAK 12(9P24.1) WILD-TYPE" 
                   TCGA-BR-7723                    TCGA-BR-7851 
"AMP PEAK 12(9P24.1) WILD-TYPE" "AMP PEAK 12(9P24.1) WILD-TYPE" 
                   TCGA-BR-7901                    TCGA-BR-7957 
"AMP PEAK 12(9P24.1) WILD-TYPE" "AMP PEAK 12(9P24.1) WILD-TYPE" 
                   TCGA-BR-7958                    TCGA-BR-7959 
"AMP PEAK 12(9P24.1) WILD-TYPE" "AMP PEAK 12(9P24.1) WILD-TYPE" 
                   TCGA-BR-8059                    TCGA-BR-8060 
"AMP PEAK 12(9P24.1) WILD-TYPE" "AMP PEAK 12(9P24.1) WILD-TYPE" 
                   TCGA-BR-8077                    TCGA-BR-8078 
"AMP PEAK 12(9P24.1) WILD-TYPE" "AMP PEAK 12(9P24.1) WILD-TYPE" 
                   TCGA-BR-8080                    TCGA-BR-8081 
"AMP PEAK 12(9P24.1) WILD-TYPE" "AMP PEAK 12(9P24.1) WILD-TYPE" 
                   TCGA-BR-8284                    TCGA-BR-8285 
"AMP PEAK 12(9P24.1) WILD-TYPE" "AMP PEAK 12(9P24.1) WILD-TYPE" 
                   TCGA-BR-8286                    TCGA-BR-8289 
"AMP PEAK 12(9P24.1) WILD-TYPE" "AMP PEAK 12(9P24.1) WILD-TYPE" 
                   TCGA-BR-8291                    TCGA-BR-8295 
"AMP PEAK 12(9P24.1) WILD-TYPE" "AMP PEAK 12(9P24.1) WILD-TYPE" 
                   TCGA-BR-8296                    TCGA-BR-8297 
"AMP PEAK 12(9P24.1) WILD-TYPE" "AMP PEAK 12(9P24.1) WILD-TYPE" 
                   TCGA-CD-5798                    TCGA-CD-5799 
  "AMP PEAK 12(9P24.1) MUTATED" "AMP PEAK 12(9P24.1) WILD-TYPE" 
                   TCGA-CD-5800                    TCGA-CD-5801 
"AMP PEAK 12(9P24.1) WILD-TYPE"   "AMP PEAK 12(9P24.1) MUTATED" 
                   TCGA-CD-5802                    TCGA-CD-5803 
"AMP PEAK 12(9P24.1) WILD-TYPE" "AMP PEAK 12(9P24.1) WILD-TYPE" 
                   TCGA-CG-4300                    TCGA-CG-4301 
"AMP PEAK 12(9P24.1) WILD-TYPE" "AMP PEAK 12(9P24.1) WILD-TYPE" 
                   TCGA-CG-4304                    TCGA-CG-4305 
"AMP PEAK 12(9P24.1) WILD-TYPE" "AMP PEAK 12(9P24.1) WILD-TYPE" 
                   TCGA-CG-4306                    TCGA-CG-4436 
"AMP PEAK 12(9P24.1) WILD-TYPE"   "AMP PEAK 12(9P24.1) MUTATED" 
                   TCGA-CG-4437                    TCGA-CG-4438 
  "AMP PEAK 12(9P24.1) MUTATED" "AMP PEAK 12(9P24.1) WILD-TYPE" 
                   TCGA-CG-4440                    TCGA-CG-4441 
"AMP PEAK 12(9P24.1) WILD-TYPE" "AMP PEAK 12(9P24.1) WILD-TYPE" 
                   TCGA-CG-4443                    TCGA-CG-4444 
"AMP PEAK 12(9P24.1) WILD-TYPE" "AMP PEAK 12(9P24.1) WILD-TYPE" 
                   TCGA-CG-4449                    TCGA-CG-4455 
"AMP PEAK 12(9P24.1) WILD-TYPE" "AMP PEAK 12(9P24.1) WILD-TYPE" 
                   TCGA-CG-4460                    TCGA-CG-4462 
  "AMP PEAK 12(9P24.1) MUTATED" "AMP PEAK 12(9P24.1) WILD-TYPE" 
                   TCGA-CG-4465                    TCGA-CG-4466 
"AMP PEAK 12(9P24.1) WILD-TYPE" "AMP PEAK 12(9P24.1) WILD-TYPE" 
                   TCGA-CG-4469                    TCGA-CG-4472 
"AMP PEAK 12(9P24.1) WILD-TYPE" "AMP PEAK 12(9P24.1) WILD-TYPE" 
                   TCGA-CG-4474                    TCGA-CG-4477 
"AMP PEAK 12(9P24.1) WILD-TYPE"   "AMP PEAK 12(9P24.1) MUTATED" 
                   TCGA-CG-5716                    TCGA-CG-5717 
"AMP PEAK 12(9P24.1) WILD-TYPE" "AMP PEAK 12(9P24.1) WILD-TYPE" 
                   TCGA-CG-5718                    TCGA-CG-5719 
"AMP PEAK 12(9P24.1) WILD-TYPE" "AMP PEAK 12(9P24.1) WILD-TYPE" 
                   TCGA-CG-5720                    TCGA-CG-5721 
"AMP PEAK 12(9P24.1) WILD-TYPE" "AMP PEAK 12(9P24.1) WILD-TYPE" 
                   TCGA-CG-5722                    TCGA-CG-5723 
"AMP PEAK 12(9P24.1) WILD-TYPE" "AMP PEAK 12(9P24.1) WILD-TYPE" 
                   TCGA-CG-5724                    TCGA-CG-5725 
"AMP PEAK 12(9P24.1) WILD-TYPE" "AMP PEAK 12(9P24.1) WILD-TYPE" 
                   TCGA-CG-5726                    TCGA-CG-5727 
"AMP PEAK 12(9P24.1) WILD-TYPE" "AMP PEAK 12(9P24.1) WILD-TYPE" 
                   TCGA-CG-5728                    TCGA-CG-5730 
"AMP PEAK 12(9P24.1) WILD-TYPE" "AMP PEAK 12(9P24.1) WILD-TYPE" 
                   TCGA-CG-5732                    TCGA-CG-5733 
"AMP PEAK 12(9P24.1) WILD-TYPE" "AMP PEAK 12(9P24.1) WILD-TYPE" 
                   TCGA-CG-5734                    TCGA-D7-5577 
"AMP PEAK 12(9P24.1) WILD-TYPE" "AMP PEAK 12(9P24.1) WILD-TYPE" 
                   TCGA-D7-5578                    TCGA-D7-5579 
"AMP PEAK 12(9P24.1) WILD-TYPE" "AMP PEAK 12(9P24.1) WILD-TYPE" 
                   TCGA-D7-6518                    TCGA-D7-6519 
"AMP PEAK 12(9P24.1) WILD-TYPE" "AMP PEAK 12(9P24.1) WILD-TYPE" 
                   TCGA-D7-6520                    TCGA-D7-6521 
"AMP PEAK 12(9P24.1) WILD-TYPE" "AMP PEAK 12(9P24.1) WILD-TYPE" 
                   TCGA-D7-6522                    TCGA-D7-6524 
"AMP PEAK 12(9P24.1) WILD-TYPE" "AMP PEAK 12(9P24.1) WILD-TYPE" 
                   TCGA-D7-6525                    TCGA-D7-6526 
"AMP PEAK 12(9P24.1) WILD-TYPE" "AMP PEAK 12(9P24.1) WILD-TYPE" 
                   TCGA-D7-6527                    TCGA-D7-6528 
"AMP PEAK 12(9P24.1) WILD-TYPE"   "AMP PEAK 12(9P24.1) MUTATED" 
                   TCGA-D7-6815                    TCGA-D7-6817 
"AMP PEAK 12(9P24.1) WILD-TYPE" "AMP PEAK 12(9P24.1) WILD-TYPE" 
                   TCGA-D7-6818                    TCGA-D7-6820 
  "AMP PEAK 12(9P24.1) MUTATED" "AMP PEAK 12(9P24.1) WILD-TYPE" 
                   TCGA-D7-6822                    TCGA-EQ-5647 
  "AMP PEAK 12(9P24.1) MUTATED"   "AMP PEAK 12(9P24.1) MUTATED" 
                   TCGA-EQ-8122                    TCGA-F1-6177 
"AMP PEAK 12(9P24.1) WILD-TYPE" "AMP PEAK 12(9P24.1) WILD-TYPE" 
                   TCGA-F1-6874                    TCGA-F1-6875 
"AMP PEAK 12(9P24.1) WILD-TYPE"   "AMP PEAK 12(9P24.1) MUTATED" 
                   TCGA-FP-7735                    TCGA-FP-7829 
"AMP PEAK 12(9P24.1) WILD-TYPE" "AMP PEAK 12(9P24.1) WILD-TYPE" 
                   TCGA-FP-7916                    TCGA-FP-7998 
"AMP PEAK 12(9P24.1) WILD-TYPE" "AMP PEAK 12(9P24.1) WILD-TYPE" 
                   TCGA-HJ-7597                    TCGA-IN-7806 
"AMP PEAK 12(9P24.1) WILD-TYPE" "AMP PEAK 12(9P24.1) WILD-TYPE" 
                   TCGA-IN-7808                    TCGA-IP-7968 
"AMP PEAK 12(9P24.1) WILD-TYPE" "AMP PEAK 12(9P24.1) WILD-TYPE" 
                   TCGA-B7-5816                    TCGA-B7-5818 
"AMP PEAK 12(9P24.1) WILD-TYPE" "AMP PEAK 12(9P24.1) WILD-TYPE" 
                   TCGA-BR-6452                    TCGA-BR-6455 
"AMP PEAK 12(9P24.1) WILD-TYPE" "AMP PEAK 12(9P24.1) WILD-TYPE" 
                   TCGA-BR-6457                    TCGA-BR-6458 
"AMP PEAK 12(9P24.1) WILD-TYPE" "AMP PEAK 12(9P24.1) WILD-TYPE" 
                   TCGA-BR-6563                    TCGA-BR-6564 
"AMP PEAK 12(9P24.1) WILD-TYPE" "AMP PEAK 12(9P24.1) WILD-TYPE" 
                   TCGA-BR-6565                    TCGA-BR-6566 
"AMP PEAK 12(9P24.1) WILD-TYPE" "AMP PEAK 12(9P24.1) WILD-TYPE" 
                   TCGA-BR-6705                    TCGA-BR-6706 
"AMP PEAK 12(9P24.1) WILD-TYPE"   "AMP PEAK 12(9P24.1) MUTATED" 
                   TCGA-BR-6707                    TCGA-BR-6709 
  "AMP PEAK 12(9P24.1) MUTATED"   "AMP PEAK 12(9P24.1) MUTATED" 
                   TCGA-BR-6710                    TCGA-BR-6801 
"AMP PEAK 12(9P24.1) WILD-TYPE" "AMP PEAK 12(9P24.1) WILD-TYPE" 
                   TCGA-BR-6802                    TCGA-BR-6803 
"AMP PEAK 12(9P24.1) WILD-TYPE" "AMP PEAK 12(9P24.1) WILD-TYPE" 
                   TCGA-BR-6852                    TCGA-BR-7196 
"AMP PEAK 12(9P24.1) WILD-TYPE" "AMP PEAK 12(9P24.1) WILD-TYPE" 
                   TCGA-BR-7197                    TCGA-BR-7703 
"AMP PEAK 12(9P24.1) WILD-TYPE" "AMP PEAK 12(9P24.1) WILD-TYPE" 
                   TCGA-BR-7704                    TCGA-BR-7707 
"AMP PEAK 12(9P24.1) WILD-TYPE"   "AMP PEAK 12(9P24.1) MUTATED" 
                   TCGA-BR-7715                    TCGA-BR-7716 
"AMP PEAK 12(9P24.1) WILD-TYPE" "AMP PEAK 12(9P24.1) WILD-TYPE" 
                   TCGA-BR-7717                    TCGA-BR-7722 
"AMP PEAK 12(9P24.1) WILD-TYPE" "AMP PEAK 12(9P24.1) WILD-TYPE" 
                   TCGA-BR-7723                    TCGA-BR-7851 
"AMP PEAK 12(9P24.1) WILD-TYPE" "AMP PEAK 12(9P24.1) WILD-TYPE" 
                   TCGA-BR-7901                    TCGA-BR-7957 
"AMP PEAK 12(9P24.1) WILD-TYPE" "AMP PEAK 12(9P24.1) WILD-TYPE" 
                   TCGA-BR-7958                    TCGA-BR-7959 
"AMP PEAK 12(9P24.1) WILD-TYPE" "AMP PEAK 12(9P24.1) WILD-TYPE" 
                   TCGA-BR-8059                    TCGA-BR-8060 
"AMP PEAK 12(9P24.1) WILD-TYPE" "AMP PEAK 12(9P24.1) WILD-TYPE" 
                   TCGA-BR-8077                    TCGA-BR-8078 
"AMP PEAK 12(9P24.1) WILD-TYPE" "AMP PEAK 12(9P24.1) WILD-TYPE" 
                   TCGA-BR-8080                    TCGA-BR-8081 
"AMP PEAK 12(9P24.1) WILD-TYPE" "AMP PEAK 12(9P24.1) WILD-TYPE" 
                   TCGA-BR-8284                    TCGA-BR-8285 
"AMP PEAK 12(9P24.1) WILD-TYPE" "AMP PEAK 12(9P24.1) WILD-TYPE" 
                   TCGA-BR-8286                    TCGA-BR-8289 
"AMP PEAK 12(9P24.1) WILD-TYPE" "AMP PEAK 12(9P24.1) WILD-TYPE" 
                   TCGA-BR-8291                    TCGA-BR-8295 
"AMP PEAK 12(9P24.1) WILD-TYPE" "AMP PEAK 12(9P24.1) WILD-TYPE" 
                   TCGA-BR-8296                    TCGA-BR-8297 
"AMP PEAK 12(9P24.1) WILD-TYPE" "AMP PEAK 12(9P24.1) WILD-TYPE" 
                   TCGA-CD-5798                    TCGA-CD-5799 
  "AMP PEAK 12(9P24.1) MUTATED" "AMP PEAK 12(9P24.1) WILD-TYPE" 
                   TCGA-CD-5800                    TCGA-CD-5801 
"AMP PEAK 12(9P24.1) WILD-TYPE"   "AMP PEAK 12(9P24.1) MUTATED" 
                   TCGA-CD-5802                    TCGA-CD-5803 
"AMP PEAK 12(9P24.1) WILD-TYPE" "AMP PEAK 12(9P24.1) WILD-TYPE" 
                   TCGA-CG-4300                    TCGA-CG-4301 
"AMP PEAK 12(9P24.1) WILD-TYPE" "AMP PEAK 12(9P24.1) WILD-TYPE" 
                   TCGA-CG-4304                    TCGA-CG-4305 
"AMP PEAK 12(9P24.1) WILD-TYPE" "AMP PEAK 12(9P24.1) WILD-TYPE" 
                   TCGA-CG-4306                    TCGA-CG-4436 
"AMP PEAK 12(9P24.1) WILD-TYPE"   "AMP PEAK 12(9P24.1) MUTATED" 
                   TCGA-CG-4437                    TCGA-CG-4438 
  "AMP PEAK 12(9P24.1) MUTATED" "AMP PEAK 12(9P24.1) WILD-TYPE" 
                   TCGA-CG-4440                    TCGA-CG-4441 
"AMP PEAK 12(9P24.1) WILD-TYPE" "AMP PEAK 12(9P24.1) WILD-TYPE" 
                   TCGA-CG-4443                    TCGA-CG-4444 
"AMP PEAK 12(9P24.1) WILD-TYPE" "AMP PEAK 12(9P24.1) WILD-TYPE" 
                   TCGA-CG-4449                    TCGA-CG-4455 
"AMP PEAK 12(9P24.1) WILD-TYPE" "AMP PEAK 12(9P24.1) WILD-TYPE" 
                   TCGA-CG-4460                    TCGA-CG-4462 
  "AMP PEAK 12(9P24.1) MUTATED" "AMP PEAK 12(9P24.1) WILD-TYPE" 
                   TCGA-CG-4465                    TCGA-CG-4466 
"AMP PEAK 12(9P24.1) WILD-TYPE" "AMP PEAK 12(9P24.1) WILD-TYPE" 
                   TCGA-CG-4469                    TCGA-CG-4472 
"AMP PEAK 12(9P24.1) WILD-TYPE" "AMP PEAK 12(9P24.1) WILD-TYPE" 
                   TCGA-CG-4474                    TCGA-CG-4477 
"AMP PEAK 12(9P24.1) WILD-TYPE"   "AMP PEAK 12(9P24.1) MUTATED" 
                   TCGA-CG-5716                    TCGA-CG-5717 
"AMP PEAK 12(9P24.1) WILD-TYPE" "AMP PEAK 12(9P24.1) WILD-TYPE" 
                   TCGA-CG-5718                    TCGA-CG-5719 
"AMP PEAK 12(9P24.1) WILD-TYPE" "AMP PEAK 12(9P24.1) WILD-TYPE" 
                   TCGA-CG-5720                    TCGA-CG-5721 
"AMP PEAK 12(9P24.1) WILD-TYPE" "AMP PEAK 12(9P24.1) WILD-TYPE" 
                   TCGA-CG-5722                    TCGA-CG-5723 
"AMP PEAK 12(9P24.1) WILD-TYPE" "AMP PEAK 12(9P24.1) WILD-TYPE" 
                   TCGA-CG-5724                    TCGA-CG-5725 
"AMP PEAK 12(9P24.1) WILD-TYPE" "AMP PEAK 12(9P24.1) WILD-TYPE" 
                   TCGA-CG-5726                    TCGA-CG-5727 
"AMP PEAK 12(9P24.1) WILD-TYPE" "AMP PEAK 12(9P24.1) WILD-TYPE" 
                   TCGA-CG-5728                    TCGA-CG-5730 
"AMP PEAK 12(9P24.1) WILD-TYPE" "AMP PEAK 12(9P24.1) WILD-TYPE" 
                   TCGA-CG-5732                    TCGA-CG-5733 
"AMP PEAK 12(9P24.1) WILD-TYPE" "AMP PEAK 12(9P24.1) WILD-TYPE" 
                   TCGA-CG-5734                    TCGA-D7-5577 
"AMP PEAK 12(9P24.1) WILD-TYPE" "AMP PEAK 12(9P24.1) WILD-TYPE" 
                   TCGA-D7-5578                    TCGA-D7-5579 
"AMP PEAK 12(9P24.1) WILD-TYPE" "AMP PEAK 12(9P24.1) WILD-TYPE" 
                   TCGA-D7-6518                    TCGA-D7-6519 
"AMP PEAK 12(9P24.1) WILD-TYPE" "AMP PEAK 12(9P24.1) WILD-TYPE" 
                   TCGA-D7-6520                    TCGA-D7-6521 
"AMP PEAK 12(9P24.1) WILD-TYPE" "AMP PEAK 12(9P24.1) WILD-TYPE" 
                   TCGA-D7-6522                    TCGA-D7-6524 
"AMP PEAK 12(9P24.1) WILD-TYPE" "AMP PEAK 12(9P24.1) WILD-TYPE" 
                   TCGA-D7-6525                    TCGA-D7-6526 
"AMP PEAK 12(9P24.1) WILD-TYPE" "AMP PEAK 12(9P24.1) WILD-TYPE" 
                   TCGA-D7-6527                    TCGA-D7-6528 
"AMP PEAK 12(9P24.1) WILD-TYPE"   "AMP PEAK 12(9P24.1) MUTATED" 
                   TCGA-D7-6815                    TCGA-D7-6817 
"AMP PEAK 12(9P24.1) WILD-TYPE" "AMP PEAK 12(9P24.1) WILD-TYPE" 
                   TCGA-D7-6818                    TCGA-D7-6820 
  "AMP PEAK 12(9P24.1) MUTATED" "AMP PEAK 12(9P24.1) WILD-TYPE" 
                   TCGA-D7-6822                    TCGA-EQ-5647 
  "AMP PEAK 12(9P24.1) MUTATED"   "AMP PEAK 12(9P24.1) MUTATED" 
                   TCGA-EQ-8122                    TCGA-F1-6177 
"AMP PEAK 12(9P24.1) WILD-TYPE" "AMP PEAK 12(9P24.1) WILD-TYPE" 
                   TCGA-F1-6874                    TCGA-F1-6875 
"AMP PEAK 12(9P24.1) WILD-TYPE"   "AMP PEAK 12(9P24.1) MUTATED" 
                   TCGA-FP-7735                    TCGA-FP-7829 
"AMP PEAK 12(9P24.1) WILD-TYPE" "AMP PEAK 12(9P24.1) WILD-TYPE" 
                   TCGA-FP-7916                    TCGA-FP-7998 
"AMP PEAK 12(9P24.1) WILD-TYPE" "AMP PEAK 12(9P24.1) WILD-TYPE" 
                   TCGA-HJ-7597                    TCGA-IN-7806 
"AMP PEAK 12(9P24.1) WILD-TYPE" "AMP PEAK 12(9P24.1) WILD-TYPE" 
                   TCGA-IN-7808                    TCGA-IP-7968 
"AMP PEAK 12(9P24.1) WILD-TYPE" "AMP PEAK 12(9P24.1) WILD-TYPE" 
                   TCGA-B7-5816                    TCGA-B7-5818 
"AMP PEAK 12(9P24.1) WILD-TYPE" "AMP PEAK 12(9P24.1) WILD-TYPE" 
                   TCGA-BR-6452                    TCGA-BR-6455 
"AMP PEAK 12(9P24.1) WILD-TYPE" "AMP PEAK 12(9P24.1) WILD-TYPE" 
                   TCGA-BR-6457                    TCGA-BR-6458 
"AMP PEAK 12(9P24.1) WILD-TYPE" "AMP PEAK 12(9P24.1) WILD-TYPE" 
                   TCGA-BR-6563                    TCGA-BR-6564 
"AMP PEAK 12(9P24.1) WILD-TYPE" "AMP PEAK 12(9P24.1) WILD-TYPE" 
                   TCGA-BR-6565                    TCGA-BR-6566 
"AMP PEAK 12(9P24.1) WILD-TYPE" "AMP PEAK 12(9P24.1) WILD-TYPE" 
                   TCGA-BR-6705                    TCGA-BR-6706 
"AMP PEAK 12(9P24.1) WILD-TYPE"   "AMP PEAK 12(9P24.1) MUTATED" 
                   TCGA-BR-6707                    TCGA-BR-6709 
  "AMP PEAK 12(9P24.1) MUTATED"   "AMP PEAK 12(9P24.1) MUTATED" 
                   TCGA-BR-6710                    TCGA-BR-6801 
"AMP PEAK 12(9P24.1) WILD-TYPE" "AMP PEAK 12(9P24.1) WILD-TYPE" 
                   TCGA-BR-6802                    TCGA-BR-6803 
"AMP PEAK 12(9P24.1) WILD-TYPE" "AMP PEAK 12(9P24.1) WILD-TYPE" 
                   TCGA-BR-6852                    TCGA-BR-7196 
"AMP PEAK 12(9P24.1) WILD-TYPE" "AMP PEAK 12(9P24.1) WILD-TYPE" 
                   TCGA-BR-7197                    TCGA-BR-7703 
"AMP PEAK 12(9P24.1) WILD-TYPE" "AMP PEAK 12(9P24.1) WILD-TYPE" 
                   TCGA-BR-7704                    TCGA-BR-7707 
"AMP PEAK 12(9P24.1) WILD-TYPE"   "AMP PEAK 12(9P24.1) MUTATED" 
                   TCGA-BR-7715                    TCGA-BR-7716 
"AMP PEAK 12(9P24.1) WILD-TYPE" "AMP PEAK 12(9P24.1) WILD-TYPE" 
                   TCGA-BR-7717                    TCGA-BR-7722 
"AMP PEAK 12(9P24.1) WILD-TYPE" "AMP PEAK 12(9P24.1) WILD-TYPE" 
                   TCGA-BR-7723                    TCGA-BR-7851 
"AMP PEAK 12(9P24.1) WILD-TYPE" "AMP PEAK 12(9P24.1) WILD-TYPE" 
                   TCGA-BR-7901                    TCGA-BR-7957 
"AMP PEAK 12(9P24.1) WILD-TYPE" "AMP PEAK 12(9P24.1) WILD-TYPE" 
                   TCGA-BR-7958                    TCGA-BR-7959 
"AMP PEAK 12(9P24.1) WILD-TYPE" "AMP PEAK 12(9P24.1) WILD-TYPE" 
                   TCGA-BR-8059                    TCGA-BR-8060 
"AMP PEAK 12(9P24.1) WILD-TYPE" "AMP PEAK 12(9P24.1) WILD-TYPE" 
                   TCGA-BR-8077                    TCGA-BR-8078 
"AMP PEAK 12(9P24.1) WILD-TYPE" "AMP PEAK 12(9P24.1) WILD-TYPE" 
                   TCGA-BR-8080                    TCGA-BR-8081 
"AMP PEAK 12(9P24.1) WILD-TYPE" "AMP PEAK 12(9P24.1) WILD-TYPE" 
                   TCGA-BR-8284                    TCGA-BR-8285 
"AMP PEAK 12(9P24.1) WILD-TYPE" "AMP PEAK 12(9P24.1) WILD-TYPE" 
                   TCGA-BR-8286                    TCGA-BR-8289 
"AMP PEAK 12(9P24.1) WILD-TYPE" "AMP PEAK 12(9P24.1) WILD-TYPE" 
                   TCGA-BR-8291                    TCGA-BR-8295 
"AMP PEAK 12(9P24.1) WILD-TYPE" "AMP PEAK 12(9P24.1) WILD-TYPE" 
                   TCGA-BR-8296                    TCGA-BR-8297 
"AMP PEAK 12(9P24.1) WILD-TYPE" "AMP PEAK 12(9P24.1) WILD-TYPE" 
                   TCGA-CD-5798                    TCGA-CD-5799 
  "AMP PEAK 12(9P24.1) MUTATED" "AMP PEAK 12(9P24.1) WILD-TYPE" 
                   TCGA-CD-5800                    TCGA-CD-5801 
"AMP PEAK 12(9P24.1) WILD-TYPE"   "AMP PEAK 12(9P24.1) MUTATED" 
                   TCGA-CD-5802                    TCGA-CD-5803 
"AMP PEAK 12(9P24.1) WILD-TYPE" "AMP PEAK 12(9P24.1) WILD-TYPE" 
                   TCGA-CG-4300                    TCGA-CG-4301 
"AMP PEAK 12(9P24.1) WILD-TYPE" "AMP PEAK 12(9P24.1) WILD-TYPE" 
                   TCGA-CG-4304                    TCGA-CG-4305 
"AMP PEAK 12(9P24.1) WILD-TYPE" "AMP PEAK 12(9P24.1) WILD-TYPE" 
                   TCGA-CG-4306                    TCGA-CG-4436 
"AMP PEAK 12(9P24.1) WILD-TYPE"   "AMP PEAK 12(9P24.1) MUTATED" 
                   TCGA-CG-4437                    TCGA-CG-4438 
  "AMP PEAK 12(9P24.1) MUTATED" "AMP PEAK 12(9P24.1) WILD-TYPE" 
                   TCGA-CG-4440                    TCGA-CG-4441 
"AMP PEAK 12(9P24.1) WILD-TYPE" "AMP PEAK 12(9P24.1) WILD-TYPE" 
                   TCGA-CG-4443                    TCGA-CG-4444 
"AMP PEAK 12(9P24.1) WILD-TYPE" "AMP PEAK 12(9P24.1) WILD-TYPE" 
                   TCGA-CG-4449                    TCGA-CG-4455 
"AMP PEAK 12(9P24.1) WILD-TYPE" "AMP PEAK 12(9P24.1) WILD-TYPE" 
                   TCGA-CG-4460                    TCGA-CG-4462 
  "AMP PEAK 12(9P24.1) MUTATED" "AMP PEAK 12(9P24.1) WILD-TYPE" 
                   TCGA-CG-4465                    TCGA-CG-4466 
"AMP PEAK 12(9P24.1) WILD-TYPE" "AMP PEAK 12(9P24.1) WILD-TYPE" 
                   TCGA-CG-4469                    TCGA-CG-4472 
"AMP PEAK 12(9P24.1) WILD-TYPE" "AMP PEAK 12(9P24.1) WILD-TYPE" 
                   TCGA-CG-4474                    TCGA-CG-4477 
"AMP PEAK 12(9P24.1) WILD-TYPE"   "AMP PEAK 12(9P24.1) MUTATED" 
                   TCGA-CG-5716                    TCGA-CG-5717 
"AMP PEAK 12(9P24.1) WILD-TYPE" "AMP PEAK 12(9P24.1) WILD-TYPE" 
                   TCGA-CG-5718                    TCGA-CG-5719 
"AMP PEAK 12(9P24.1) WILD-TYPE" "AMP PEAK 12(9P24.1) WILD-TYPE" 
                   TCGA-CG-5720                    TCGA-CG-5721 
"AMP PEAK 12(9P24.1) WILD-TYPE" "AMP PEAK 12(9P24.1) WILD-TYPE" 
                   TCGA-CG-5722                    TCGA-CG-5723 
"AMP PEAK 12(9P24.1) WILD-TYPE" "AMP PEAK 12(9P24.1) WILD-TYPE" 
                   TCGA-CG-5724                    TCGA-CG-5725 
"AMP PEAK 12(9P24.1) WILD-TYPE" "AMP PEAK 12(9P24.1) WILD-TYPE" 
                   TCGA-CG-5726                    TCGA-CG-5727 
"AMP PEAK 12(9P24.1) WILD-TYPE" "AMP PEAK 12(9P24.1) WILD-TYPE" 
                   TCGA-CG-5728                    TCGA-CG-5730 
"AMP PEAK 12(9P24.1) WILD-TYPE" "AMP PEAK 12(9P24.1) WILD-TYPE" 
                   TCGA-CG-5732                    TCGA-CG-5733 
"AMP PEAK 12(9P24.1) WILD-TYPE" "AMP PEAK 12(9P24.1) WILD-TYPE" 
                   TCGA-CG-5734                    TCGA-D7-5577 
"AMP PEAK 12(9P24.1) WILD-TYPE" "AMP PEAK 12(9P24.1) WILD-TYPE" 
                   TCGA-D7-5578                    TCGA-D7-5579 
"AMP PEAK 12(9P24.1) WILD-TYPE" "AMP PEAK 12(9P24.1) WILD-TYPE" 
                   TCGA-D7-6518                    TCGA-D7-6519 
"AMP PEAK 12(9P24.1) WILD-TYPE" "AMP PEAK 12(9P24.1) WILD-TYPE" 
                   TCGA-D7-6520                    TCGA-D7-6521 
"AMP PEAK 12(9P24.1) WILD-TYPE" "AMP PEAK 12(9P24.1) WILD-TYPE" 
                   TCGA-D7-6522                    TCGA-D7-6524 
"AMP PEAK 12(9P24.1) WILD-TYPE" "AMP PEAK 12(9P24.1) WILD-TYPE" 
                   TCGA-D7-6525                    TCGA-D7-6526 
"AMP PEAK 12(9P24.1) WILD-TYPE" "AMP PEAK 12(9P24.1) WILD-TYPE" 
                   TCGA-D7-6527                    TCGA-D7-6528 
"AMP PEAK 12(9P24.1) WILD-TYPE"   "AMP PEAK 12(9P24.1) MUTATED" 
                   TCGA-D7-6815                    TCGA-D7-6817 
"AMP PEAK 12(9P24.1) WILD-TYPE" "AMP PEAK 12(9P24.1) WILD-TYPE" 
                   TCGA-D7-6818                    TCGA-D7-6820 
  "AMP PEAK 12(9P24.1) MUTATED" "AMP PEAK 12(9P24.1) WILD-TYPE" 
                   TCGA-D7-6822                    TCGA-EQ-5647 
  "AMP PEAK 12(9P24.1) MUTATED"   "AMP PEAK 12(9P24.1) MUTATED" 
                   TCGA-EQ-8122                    TCGA-F1-6177 
"AMP PEAK 12(9P24.1) WILD-TYPE" "AMP PEAK 12(9P24.1) WILD-TYPE" 
                   TCGA-F1-6874                    TCGA-F1-6875 
"AMP PEAK 12(9P24.1) WILD-TYPE"   "AMP PEAK 12(9P24.1) MUTATED" 
                   TCGA-FP-7735                    TCGA-FP-7829 
"AMP PEAK 12(9P24.1) WILD-TYPE" "AMP PEAK 12(9P24.1) WILD-TYPE" 
                   TCGA-FP-7916                    TCGA-FP-7998 
"AMP PEAK 12(9P24.1) WILD-TYPE" "AMP PEAK 12(9P24.1) WILD-TYPE" 
                   TCGA-HJ-7597                    TCGA-IN-7806 
"AMP PEAK 12(9P24.1) WILD-TYPE" "AMP PEAK 12(9P24.1) WILD-TYPE" 
                   TCGA-IN-7808                    TCGA-IP-7968 
"AMP PEAK 12(9P24.1) WILD-TYPE" "AMP PEAK 12(9P24.1) WILD-TYPE" 
[1] "hr=" "1.1"
D12V2, continuous
D12V3, binary
[1] "tbl2"
                               cls
clus                            [,1] [,2]
  AMP PEAK 12(9P24.1) MUTATED      8   14
  AMP PEAK 12(9P24.1) WILD-TYPE   57   82
        clus
vv       AMP PEAK 12(9P24.1) MUTATED AMP PEAK 12(9P24.1) WILD-TYPE
  FEMALE                           8                            57
  MALE                            14                            82
D12V4, multiclass
D12V5, multiclass
    clus
vv   AMP PEAK 12(9P24.1) MUTATED AMP PEAK 12(9P24.1) WILD-TYPE
  T1                           2                             4
  T2                          10                            43
  T3                           7                            52
  T4                           2                            31
D12V6, multiclass
    clus
vv   AMP PEAK 12(9P24.1) MUTATED AMP PEAK 12(9P24.1) WILD-TYPE
  N0                          10                            40
  N1                           7                            50
  N2                           1                            23
  N3                           2                            17
D12V7, multiclass
    clus
vv   AMP PEAK 12(9P24.1) MUTATED AMP PEAK 12(9P24.1) WILD-TYPE
  M0                          19                           113
  M1                           2                            16
  MX                           1                            10
D12V8, multiclass
     clus
vv    AMP PEAK 12(9P24.1) MUTATED AMP PEAK 12(9P24.1) WILD-TYPE
  I                             8                            17
  II                            4                            39
  III                           4                            44
  IV                            3                            26
D12V9, binary
[1] "tbl2"
                               cls
clus                            [,1] [,2]
  AMP PEAK 12(9P24.1) MUTATED     20    2
  AMP PEAK 12(9P24.1) WILD-TYPE  136    3
     clus
vv    AMP PEAK 12(9P24.1) MUTATED AMP PEAK 12(9P24.1) WILD-TYPE
  NO                            2                             3
  YES                          20                           136

Clustering(13) Variable = Amp Peak 13(9q34.3) mutation analysis
D13V1, survival
                   TCGA-B7-5816                    TCGA-B7-5818 
"AMP PEAK 13(9Q34.3) WILD-TYPE" "AMP PEAK 13(9Q34.3) WILD-TYPE" 
                   TCGA-BR-6452                    TCGA-BR-6455 
"AMP PEAK 13(9Q34.3) WILD-TYPE" "AMP PEAK 13(9Q34.3) WILD-TYPE" 
                   TCGA-BR-6457                    TCGA-BR-6458 
"AMP PEAK 13(9Q34.3) WILD-TYPE" "AMP PEAK 13(9Q34.3) WILD-TYPE" 
                   TCGA-BR-6563                    TCGA-BR-6564 
"AMP PEAK 13(9Q34.3) WILD-TYPE"   "AMP PEAK 13(9Q34.3) MUTATED" 
                   TCGA-BR-6565                    TCGA-BR-6566 
"AMP PEAK 13(9Q34.3) WILD-TYPE" "AMP PEAK 13(9Q34.3) WILD-TYPE" 
                   TCGA-BR-6705                    TCGA-BR-6706 
"AMP PEAK 13(9Q34.3) WILD-TYPE" "AMP PEAK 13(9Q34.3) WILD-TYPE" 
                   TCGA-BR-6707                    TCGA-BR-6709 
  "AMP PEAK 13(9Q34.3) MUTATED" "AMP PEAK 13(9Q34.3) WILD-TYPE" 
                   TCGA-BR-6710                    TCGA-BR-6801 
"AMP PEAK 13(9Q34.3) WILD-TYPE" "AMP PEAK 13(9Q34.3) WILD-TYPE" 
                   TCGA-BR-6802                    TCGA-BR-6803 
"AMP PEAK 13(9Q34.3) WILD-TYPE" "AMP PEAK 13(9Q34.3) WILD-TYPE" 
                   TCGA-BR-6852                    TCGA-BR-7196 
"AMP PEAK 13(9Q34.3) WILD-TYPE" "AMP PEAK 13(9Q34.3) WILD-TYPE" 
                   TCGA-BR-7197                    TCGA-BR-7703 
  "AMP PEAK 13(9Q34.3) MUTATED" "AMP PEAK 13(9Q34.3) WILD-TYPE" 
                   TCGA-BR-7704                    TCGA-BR-7707 
  "AMP PEAK 13(9Q34.3) MUTATED"   "AMP PEAK 13(9Q34.3) MUTATED" 
                   TCGA-BR-7715                    TCGA-BR-7716 
  "AMP PEAK 13(9Q34.3) MUTATED" "AMP PEAK 13(9Q34.3) WILD-TYPE" 
                   TCGA-BR-7717                    TCGA-BR-7722 
  "AMP PEAK 13(9Q34.3) MUTATED" "AMP PEAK 13(9Q34.3) WILD-TYPE" 
                   TCGA-BR-7723                    TCGA-BR-7851 
"AMP PEAK 13(9Q34.3) WILD-TYPE" "AMP PEAK 13(9Q34.3) WILD-TYPE" 
                   TCGA-BR-7901                    TCGA-BR-7957 
"AMP PEAK 13(9Q34.3) WILD-TYPE" "AMP PEAK 13(9Q34.3) WILD-TYPE" 
                   TCGA-BR-7958                    TCGA-BR-7959 
"AMP PEAK 13(9Q34.3) WILD-TYPE" "AMP PEAK 13(9Q34.3) WILD-TYPE" 
                   TCGA-BR-8059                    TCGA-BR-8060 
"AMP PEAK 13(9Q34.3) WILD-TYPE" "AMP PEAK 13(9Q34.3) WILD-TYPE" 
                   TCGA-BR-8077                    TCGA-BR-8078 
"AMP PEAK 13(9Q34.3) WILD-TYPE" "AMP PEAK 13(9Q34.3) WILD-TYPE" 
                   TCGA-BR-8080                    TCGA-BR-8081 
"AMP PEAK 13(9Q34.3) WILD-TYPE" "AMP PEAK 13(9Q34.3) WILD-TYPE" 
                   TCGA-BR-8284                    TCGA-BR-8285 
"AMP PEAK 13(9Q34.3) WILD-TYPE" "AMP PEAK 13(9Q34.3) WILD-TYPE" 
                   TCGA-BR-8286                    TCGA-BR-8289 
"AMP PEAK 13(9Q34.3) WILD-TYPE" "AMP PEAK 13(9Q34.3) WILD-TYPE" 
                   TCGA-BR-8291                    TCGA-BR-8295 
"AMP PEAK 13(9Q34.3) WILD-TYPE" "AMP PEAK 13(9Q34.3) WILD-TYPE" 
                   TCGA-BR-8296                    TCGA-BR-8297 
"AMP PEAK 13(9Q34.3) WILD-TYPE" "AMP PEAK 13(9Q34.3) WILD-TYPE" 
                   TCGA-CD-5798                    TCGA-CD-5799 
"AMP PEAK 13(9Q34.3) WILD-TYPE" "AMP PEAK 13(9Q34.3) WILD-TYPE" 
                   TCGA-CD-5800                    TCGA-CD-5801 
  "AMP PEAK 13(9Q34.3) MUTATED"   "AMP PEAK 13(9Q34.3) MUTATED" 
                   TCGA-CD-5802                    TCGA-CD-5803 
"AMP PEAK 13(9Q34.3) WILD-TYPE" "AMP PEAK 13(9Q34.3) WILD-TYPE" 
                   TCGA-CG-4300                    TCGA-CG-4301 
"AMP PEAK 13(9Q34.3) WILD-TYPE"   "AMP PEAK 13(9Q34.3) MUTATED" 
                   TCGA-CG-4304                    TCGA-CG-4305 
  "AMP PEAK 13(9Q34.3) MUTATED" "AMP PEAK 13(9Q34.3) WILD-TYPE" 
                   TCGA-CG-4306                    TCGA-CG-4436 
"AMP PEAK 13(9Q34.3) WILD-TYPE"   "AMP PEAK 13(9Q34.3) MUTATED" 
                   TCGA-CG-4437                    TCGA-CG-4438 
"AMP PEAK 13(9Q34.3) WILD-TYPE" "AMP PEAK 13(9Q34.3) WILD-TYPE" 
                   TCGA-CG-4440                    TCGA-CG-4441 
"AMP PEAK 13(9Q34.3) WILD-TYPE" "AMP PEAK 13(9Q34.3) WILD-TYPE" 
                   TCGA-CG-4443                    TCGA-CG-4444 
"AMP PEAK 13(9Q34.3) WILD-TYPE" "AMP PEAK 13(9Q34.3) WILD-TYPE" 
                   TCGA-CG-4449                    TCGA-CG-4455 
  "AMP PEAK 13(9Q34.3) MUTATED" "AMP PEAK 13(9Q34.3) WILD-TYPE" 
                   TCGA-CG-4460                    TCGA-CG-4462 
"AMP PEAK 13(9Q34.3) WILD-TYPE" "AMP PEAK 13(9Q34.3) WILD-TYPE" 
                   TCGA-CG-4465                    TCGA-CG-4466 
"AMP PEAK 13(9Q34.3) WILD-TYPE"   "AMP PEAK 13(9Q34.3) MUTATED" 
                   TCGA-CG-4469                    TCGA-CG-4472 
"AMP PEAK 13(9Q34.3) WILD-TYPE" "AMP PEAK 13(9Q34.3) WILD-TYPE" 
                   TCGA-CG-4474                    TCGA-CG-4477 
"AMP PEAK 13(9Q34.3) WILD-TYPE" "AMP PEAK 13(9Q34.3) WILD-TYPE" 
                   TCGA-CG-5716                    TCGA-CG-5717 
"AMP PEAK 13(9Q34.3) WILD-TYPE" "AMP PEAK 13(9Q34.3) WILD-TYPE" 
                   TCGA-CG-5718                    TCGA-CG-5719 
  "AMP PEAK 13(9Q34.3) MUTATED" "AMP PEAK 13(9Q34.3) WILD-TYPE" 
                   TCGA-CG-5720                    TCGA-CG-5721 
"AMP PEAK 13(9Q34.3) WILD-TYPE" "AMP PEAK 13(9Q34.3) WILD-TYPE" 
                   TCGA-CG-5722                    TCGA-CG-5723 
"AMP PEAK 13(9Q34.3) WILD-TYPE" "AMP PEAK 13(9Q34.3) WILD-TYPE" 
                   TCGA-CG-5724                    TCGA-CG-5725 
"AMP PEAK 13(9Q34.3) WILD-TYPE" "AMP PEAK 13(9Q34.3) WILD-TYPE" 
                   TCGA-CG-5726                    TCGA-CG-5727 
"AMP PEAK 13(9Q34.3) WILD-TYPE" "AMP PEAK 13(9Q34.3) WILD-TYPE" 
                   TCGA-CG-5728                    TCGA-CG-5730 
"AMP PEAK 13(9Q34.3) WILD-TYPE" "AMP PEAK 13(9Q34.3) WILD-TYPE" 
                   TCGA-CG-5732                    TCGA-CG-5733 
"AMP PEAK 13(9Q34.3) WILD-TYPE" "AMP PEAK 13(9Q34.3) WILD-TYPE" 
                   TCGA-CG-5734                    TCGA-D7-5577 
"AMP PEAK 13(9Q34.3) WILD-TYPE" "AMP PEAK 13(9Q34.3) WILD-TYPE" 
                   TCGA-D7-5578                    TCGA-D7-5579 
  "AMP PEAK 13(9Q34.3) MUTATED"   "AMP PEAK 13(9Q34.3) MUTATED" 
                   TCGA-D7-6518                    TCGA-D7-6519 
"AMP PEAK 13(9Q34.3) WILD-TYPE" "AMP PEAK 13(9Q34.3) WILD-TYPE" 
                   TCGA-D7-6520                    TCGA-D7-6521 
"AMP PEAK 13(9Q34.3) WILD-TYPE" "AMP PEAK 13(9Q34.3) WILD-TYPE" 
                   TCGA-D7-6522                    TCGA-D7-6524 
"AMP PEAK 13(9Q34.3) WILD-TYPE" "AMP PEAK 13(9Q34.3) WILD-TYPE" 
                   TCGA-D7-6525                    TCGA-D7-6526 
"AMP PEAK 13(9Q34.3) WILD-TYPE"   "AMP PEAK 13(9Q34.3) MUTATED" 
                   TCGA-D7-6527                    TCGA-D7-6528 
"AMP PEAK 13(9Q34.3) WILD-TYPE"   "AMP PEAK 13(9Q34.3) MUTATED" 
                   TCGA-D7-6815                    TCGA-D7-6817 
"AMP PEAK 13(9Q34.3) WILD-TYPE" "AMP PEAK 13(9Q34.3) WILD-TYPE" 
                   TCGA-D7-6818                    TCGA-D7-6820 
  "AMP PEAK 13(9Q34.3) MUTATED"   "AMP PEAK 13(9Q34.3) MUTATED" 
                   TCGA-D7-6822                    TCGA-EQ-5647 
"AMP PEAK 13(9Q34.3) WILD-TYPE"   "AMP PEAK 13(9Q34.3) MUTATED" 
                   TCGA-EQ-8122                    TCGA-F1-6177 
"AMP PEAK 13(9Q34.3) WILD-TYPE" "AMP PEAK 13(9Q34.3) WILD-TYPE" 
                   TCGA-F1-6874                    TCGA-F1-6875 
"AMP PEAK 13(9Q34.3) WILD-TYPE"   "AMP PEAK 13(9Q34.3) MUTATED" 
                   TCGA-FP-7735                    TCGA-FP-7829 
"AMP PEAK 13(9Q34.3) WILD-TYPE" "AMP PEAK 13(9Q34.3) WILD-TYPE" 
                   TCGA-FP-7916                    TCGA-FP-7998 
"AMP PEAK 13(9Q34.3) WILD-TYPE" "AMP PEAK 13(9Q34.3) WILD-TYPE" 
                   TCGA-HJ-7597                    TCGA-IN-7806 
  "AMP PEAK 13(9Q34.3) MUTATED" "AMP PEAK 13(9Q34.3) WILD-TYPE" 
                   TCGA-IN-7808                    TCGA-IP-7968 
  "AMP PEAK 13(9Q34.3) MUTATED" "AMP PEAK 13(9Q34.3) WILD-TYPE" 
                   TCGA-B7-5816                    TCGA-B7-5818 
"AMP PEAK 13(9Q34.3) WILD-TYPE" "AMP PEAK 13(9Q34.3) WILD-TYPE" 
                   TCGA-BR-6452                    TCGA-BR-6455 
"AMP PEAK 13(9Q34.3) WILD-TYPE" "AMP PEAK 13(9Q34.3) WILD-TYPE" 
                   TCGA-BR-6457                    TCGA-BR-6458 
"AMP PEAK 13(9Q34.3) WILD-TYPE" "AMP PEAK 13(9Q34.3) WILD-TYPE" 
                   TCGA-BR-6563                    TCGA-BR-6564 
"AMP PEAK 13(9Q34.3) WILD-TYPE"   "AMP PEAK 13(9Q34.3) MUTATED" 
                   TCGA-BR-6565                    TCGA-BR-6566 
"AMP PEAK 13(9Q34.3) WILD-TYPE" "AMP PEAK 13(9Q34.3) WILD-TYPE" 
                   TCGA-BR-6705                    TCGA-BR-6706 
"AMP PEAK 13(9Q34.3) WILD-TYPE" "AMP PEAK 13(9Q34.3) WILD-TYPE" 
                   TCGA-BR-6707                    TCGA-BR-6709 
  "AMP PEAK 13(9Q34.3) MUTATED" "AMP PEAK 13(9Q34.3) WILD-TYPE" 
                   TCGA-BR-6710                    TCGA-BR-6801 
"AMP PEAK 13(9Q34.3) WILD-TYPE" "AMP PEAK 13(9Q34.3) WILD-TYPE" 
                   TCGA-BR-6802                    TCGA-BR-6803 
"AMP PEAK 13(9Q34.3) WILD-TYPE" "AMP PEAK 13(9Q34.3) WILD-TYPE" 
                   TCGA-BR-6852                    TCGA-BR-7196 
"AMP PEAK 13(9Q34.3) WILD-TYPE" "AMP PEAK 13(9Q34.3) WILD-TYPE" 
                   TCGA-BR-7197                    TCGA-BR-7703 
  "AMP PEAK 13(9Q34.3) MUTATED" "AMP PEAK 13(9Q34.3) WILD-TYPE" 
                   TCGA-BR-7704                    TCGA-BR-7707 
  "AMP PEAK 13(9Q34.3) MUTATED"   "AMP PEAK 13(9Q34.3) MUTATED" 
                   TCGA-BR-7715                    TCGA-BR-7716 
  "AMP PEAK 13(9Q34.3) MUTATED" "AMP PEAK 13(9Q34.3) WILD-TYPE" 
                   TCGA-BR-7717                    TCGA-BR-7722 
  "AMP PEAK 13(9Q34.3) MUTATED" "AMP PEAK 13(9Q34.3) WILD-TYPE" 
                   TCGA-BR-7723                    TCGA-BR-7851 
"AMP PEAK 13(9Q34.3) WILD-TYPE" "AMP PEAK 13(9Q34.3) WILD-TYPE" 
                   TCGA-BR-7901                    TCGA-BR-7957 
"AMP PEAK 13(9Q34.3) WILD-TYPE" "AMP PEAK 13(9Q34.3) WILD-TYPE" 
                   TCGA-BR-7958                    TCGA-BR-7959 
"AMP PEAK 13(9Q34.3) WILD-TYPE" "AMP PEAK 13(9Q34.3) WILD-TYPE" 
                   TCGA-BR-8059                    TCGA-BR-8060 
"AMP PEAK 13(9Q34.3) WILD-TYPE" "AMP PEAK 13(9Q34.3) WILD-TYPE" 
                   TCGA-BR-8077                    TCGA-BR-8078 
"AMP PEAK 13(9Q34.3) WILD-TYPE" "AMP PEAK 13(9Q34.3) WILD-TYPE" 
                   TCGA-BR-8080                    TCGA-BR-8081 
"AMP PEAK 13(9Q34.3) WILD-TYPE" "AMP PEAK 13(9Q34.3) WILD-TYPE" 
                   TCGA-BR-8284                    TCGA-BR-8285 
"AMP PEAK 13(9Q34.3) WILD-TYPE" "AMP PEAK 13(9Q34.3) WILD-TYPE" 
                   TCGA-BR-8286                    TCGA-BR-8289 
"AMP PEAK 13(9Q34.3) WILD-TYPE" "AMP PEAK 13(9Q34.3) WILD-TYPE" 
                   TCGA-BR-8291                    TCGA-BR-8295 
"AMP PEAK 13(9Q34.3) WILD-TYPE" "AMP PEAK 13(9Q34.3) WILD-TYPE" 
                   TCGA-BR-8296                    TCGA-BR-8297 
"AMP PEAK 13(9Q34.3) WILD-TYPE" "AMP PEAK 13(9Q34.3) WILD-TYPE" 
                   TCGA-CD-5798                    TCGA-CD-5799 
"AMP PEAK 13(9Q34.3) WILD-TYPE" "AMP PEAK 13(9Q34.3) WILD-TYPE" 
                   TCGA-CD-5800                    TCGA-CD-5801 
  "AMP PEAK 13(9Q34.3) MUTATED"   "AMP PEAK 13(9Q34.3) MUTATED" 
                   TCGA-CD-5802                    TCGA-CD-5803 
"AMP PEAK 13(9Q34.3) WILD-TYPE" "AMP PEAK 13(9Q34.3) WILD-TYPE" 
                   TCGA-CG-4300                    TCGA-CG-4301 
"AMP PEAK 13(9Q34.3) WILD-TYPE"   "AMP PEAK 13(9Q34.3) MUTATED" 
                   TCGA-CG-4304                    TCGA-CG-4305 
  "AMP PEAK 13(9Q34.3) MUTATED" "AMP PEAK 13(9Q34.3) WILD-TYPE" 
                   TCGA-CG-4306                    TCGA-CG-4436 
"AMP PEAK 13(9Q34.3) WILD-TYPE"   "AMP PEAK 13(9Q34.3) MUTATED" 
                   TCGA-CG-4437                    TCGA-CG-4438 
"AMP PEAK 13(9Q34.3) WILD-TYPE" "AMP PEAK 13(9Q34.3) WILD-TYPE" 
                   TCGA-CG-4440                    TCGA-CG-4441 
"AMP PEAK 13(9Q34.3) WILD-TYPE" "AMP PEAK 13(9Q34.3) WILD-TYPE" 
                   TCGA-CG-4443                    TCGA-CG-4444 
"AMP PEAK 13(9Q34.3) WILD-TYPE" "AMP PEAK 13(9Q34.3) WILD-TYPE" 
                   TCGA-CG-4449                    TCGA-CG-4455 
  "AMP PEAK 13(9Q34.3) MUTATED" "AMP PEAK 13(9Q34.3) WILD-TYPE" 
                   TCGA-CG-4460                    TCGA-CG-4462 
"AMP PEAK 13(9Q34.3) WILD-TYPE" "AMP PEAK 13(9Q34.3) WILD-TYPE" 
                   TCGA-CG-4465                    TCGA-CG-4466 
"AMP PEAK 13(9Q34.3) WILD-TYPE"   "AMP PEAK 13(9Q34.3) MUTATED" 
                   TCGA-CG-4469                    TCGA-CG-4472 
"AMP PEAK 13(9Q34.3) WILD-TYPE" "AMP PEAK 13(9Q34.3) WILD-TYPE" 
                   TCGA-CG-4474                    TCGA-CG-4477 
"AMP PEAK 13(9Q34.3) WILD-TYPE" "AMP PEAK 13(9Q34.3) WILD-TYPE" 
                   TCGA-CG-5716                    TCGA-CG-5717 
"AMP PEAK 13(9Q34.3) WILD-TYPE" "AMP PEAK 13(9Q34.3) WILD-TYPE" 
                   TCGA-CG-5718                    TCGA-CG-5719 
  "AMP PEAK 13(9Q34.3) MUTATED" "AMP PEAK 13(9Q34.3) WILD-TYPE" 
                   TCGA-CG-5720                    TCGA-CG-5721 
"AMP PEAK 13(9Q34.3) WILD-TYPE" "AMP PEAK 13(9Q34.3) WILD-TYPE" 
                   TCGA-CG-5722                    TCGA-CG-5723 
"AMP PEAK 13(9Q34.3) WILD-TYPE" "AMP PEAK 13(9Q34.3) WILD-TYPE" 
                   TCGA-CG-5724                    TCGA-CG-5725 
"AMP PEAK 13(9Q34.3) WILD-TYPE" "AMP PEAK 13(9Q34.3) WILD-TYPE" 
                   TCGA-CG-5726                    TCGA-CG-5727 
"AMP PEAK 13(9Q34.3) WILD-TYPE" "AMP PEAK 13(9Q34.3) WILD-TYPE" 
                   TCGA-CG-5728                    TCGA-CG-5730 
"AMP PEAK 13(9Q34.3) WILD-TYPE" "AMP PEAK 13(9Q34.3) WILD-TYPE" 
                   TCGA-CG-5732                    TCGA-CG-5733 
"AMP PEAK 13(9Q34.3) WILD-TYPE" "AMP PEAK 13(9Q34.3) WILD-TYPE" 
                   TCGA-CG-5734                    TCGA-D7-5577 
"AMP PEAK 13(9Q34.3) WILD-TYPE" "AMP PEAK 13(9Q34.3) WILD-TYPE" 
                   TCGA-D7-5578                    TCGA-D7-5579 
  "AMP PEAK 13(9Q34.3) MUTATED"   "AMP PEAK 13(9Q34.3) MUTATED" 
                   TCGA-D7-6518                    TCGA-D7-6519 
"AMP PEAK 13(9Q34.3) WILD-TYPE" "AMP PEAK 13(9Q34.3) WILD-TYPE" 
                   TCGA-D7-6520                    TCGA-D7-6521 
"AMP PEAK 13(9Q34.3) WILD-TYPE" "AMP PEAK 13(9Q34.3) WILD-TYPE" 
                   TCGA-D7-6522                    TCGA-D7-6524 
"AMP PEAK 13(9Q34.3) WILD-TYPE" "AMP PEAK 13(9Q34.3) WILD-TYPE" 
                   TCGA-D7-6525                    TCGA-D7-6526 
"AMP PEAK 13(9Q34.3) WILD-TYPE"   "AMP PEAK 13(9Q34.3) MUTATED" 
                   TCGA-D7-6527                    TCGA-D7-6528 
"AMP PEAK 13(9Q34.3) WILD-TYPE"   "AMP PEAK 13(9Q34.3) MUTATED" 
                   TCGA-D7-6815                    TCGA-D7-6817 
"AMP PEAK 13(9Q34.3) WILD-TYPE" "AMP PEAK 13(9Q34.3) WILD-TYPE" 
                   TCGA-D7-6818                    TCGA-D7-6820 
  "AMP PEAK 13(9Q34.3) MUTATED"   "AMP PEAK 13(9Q34.3) MUTATED" 
                   TCGA-D7-6822                    TCGA-EQ-5647 
"AMP PEAK 13(9Q34.3) WILD-TYPE"   "AMP PEAK 13(9Q34.3) MUTATED" 
                   TCGA-EQ-8122                    TCGA-F1-6177 
"AMP PEAK 13(9Q34.3) WILD-TYPE" "AMP PEAK 13(9Q34.3) WILD-TYPE" 
                   TCGA-F1-6874                    TCGA-F1-6875 
"AMP PEAK 13(9Q34.3) WILD-TYPE"   "AMP PEAK 13(9Q34.3) MUTATED" 
                   TCGA-FP-7735                    TCGA-FP-7829 
"AMP PEAK 13(9Q34.3) WILD-TYPE" "AMP PEAK 13(9Q34.3) WILD-TYPE" 
                   TCGA-FP-7916                    TCGA-FP-7998 
"AMP PEAK 13(9Q34.3) WILD-TYPE" "AMP PEAK 13(9Q34.3) WILD-TYPE" 
                   TCGA-HJ-7597                    TCGA-IN-7806 
  "AMP PEAK 13(9Q34.3) MUTATED" "AMP PEAK 13(9Q34.3) WILD-TYPE" 
                   TCGA-IN-7808                    TCGA-IP-7968 
  "AMP PEAK 13(9Q34.3) MUTATED" "AMP PEAK 13(9Q34.3) WILD-TYPE" 
                   TCGA-B7-5816                    TCGA-B7-5818 
"AMP PEAK 13(9Q34.3) WILD-TYPE" "AMP PEAK 13(9Q34.3) WILD-TYPE" 
                   TCGA-BR-6452                    TCGA-BR-6455 
"AMP PEAK 13(9Q34.3) WILD-TYPE" "AMP PEAK 13(9Q34.3) WILD-TYPE" 
                   TCGA-BR-6457                    TCGA-BR-6458 
"AMP PEAK 13(9Q34.3) WILD-TYPE" "AMP PEAK 13(9Q34.3) WILD-TYPE" 
                   TCGA-BR-6563                    TCGA-BR-6564 
"AMP PEAK 13(9Q34.3) WILD-TYPE"   "AMP PEAK 13(9Q34.3) MUTATED" 
                   TCGA-BR-6565                    TCGA-BR-6566 
"AMP PEAK 13(9Q34.3) WILD-TYPE" "AMP PEAK 13(9Q34.3) WILD-TYPE" 
                   TCGA-BR-6705                    TCGA-BR-6706 
"AMP PEAK 13(9Q34.3) WILD-TYPE" "AMP PEAK 13(9Q34.3) WILD-TYPE" 
                   TCGA-BR-6707                    TCGA-BR-6709 
  "AMP PEAK 13(9Q34.3) MUTATED" "AMP PEAK 13(9Q34.3) WILD-TYPE" 
                   TCGA-BR-6710                    TCGA-BR-6801 
"AMP PEAK 13(9Q34.3) WILD-TYPE" "AMP PEAK 13(9Q34.3) WILD-TYPE" 
                   TCGA-BR-6802                    TCGA-BR-6803 
"AMP PEAK 13(9Q34.3) WILD-TYPE" "AMP PEAK 13(9Q34.3) WILD-TYPE" 
                   TCGA-BR-6852                    TCGA-BR-7196 
"AMP PEAK 13(9Q34.3) WILD-TYPE" "AMP PEAK 13(9Q34.3) WILD-TYPE" 
                   TCGA-BR-7197                    TCGA-BR-7703 
  "AMP PEAK 13(9Q34.3) MUTATED" "AMP PEAK 13(9Q34.3) WILD-TYPE" 
                   TCGA-BR-7704                    TCGA-BR-7707 
  "AMP PEAK 13(9Q34.3) MUTATED"   "AMP PEAK 13(9Q34.3) MUTATED" 
                   TCGA-BR-7715                    TCGA-BR-7716 
  "AMP PEAK 13(9Q34.3) MUTATED" "AMP PEAK 13(9Q34.3) WILD-TYPE" 
                   TCGA-BR-7717                    TCGA-BR-7722 
  "AMP PEAK 13(9Q34.3) MUTATED" "AMP PEAK 13(9Q34.3) WILD-TYPE" 
                   TCGA-BR-7723                    TCGA-BR-7851 
"AMP PEAK 13(9Q34.3) WILD-TYPE" "AMP PEAK 13(9Q34.3) WILD-TYPE" 
                   TCGA-BR-7901                    TCGA-BR-7957 
"AMP PEAK 13(9Q34.3) WILD-TYPE" "AMP PEAK 13(9Q34.3) WILD-TYPE" 
                   TCGA-BR-7958                    TCGA-BR-7959 
"AMP PEAK 13(9Q34.3) WILD-TYPE" "AMP PEAK 13(9Q34.3) WILD-TYPE" 
                   TCGA-BR-8059                    TCGA-BR-8060 
"AMP PEAK 13(9Q34.3) WILD-TYPE" "AMP PEAK 13(9Q34.3) WILD-TYPE" 
                   TCGA-BR-8077                    TCGA-BR-8078 
"AMP PEAK 13(9Q34.3) WILD-TYPE" "AMP PEAK 13(9Q34.3) WILD-TYPE" 
                   TCGA-BR-8080                    TCGA-BR-8081 
"AMP PEAK 13(9Q34.3) WILD-TYPE" "AMP PEAK 13(9Q34.3) WILD-TYPE" 
                   TCGA-BR-8284                    TCGA-BR-8285 
"AMP PEAK 13(9Q34.3) WILD-TYPE" "AMP PEAK 13(9Q34.3) WILD-TYPE" 
                   TCGA-BR-8286                    TCGA-BR-8289 
"AMP PEAK 13(9Q34.3) WILD-TYPE" "AMP PEAK 13(9Q34.3) WILD-TYPE" 
                   TCGA-BR-8291                    TCGA-BR-8295 
"AMP PEAK 13(9Q34.3) WILD-TYPE" "AMP PEAK 13(9Q34.3) WILD-TYPE" 
                   TCGA-BR-8296                    TCGA-BR-8297 
"AMP PEAK 13(9Q34.3) WILD-TYPE" "AMP PEAK 13(9Q34.3) WILD-TYPE" 
                   TCGA-CD-5798                    TCGA-CD-5799 
"AMP PEAK 13(9Q34.3) WILD-TYPE" "AMP PEAK 13(9Q34.3) WILD-TYPE" 
                   TCGA-CD-5800                    TCGA-CD-5801 
  "AMP PEAK 13(9Q34.3) MUTATED"   "AMP PEAK 13(9Q34.3) MUTATED" 
                   TCGA-CD-5802                    TCGA-CD-5803 
"AMP PEAK 13(9Q34.3) WILD-TYPE" "AMP PEAK 13(9Q34.3) WILD-TYPE" 
                   TCGA-CG-4300                    TCGA-CG-4301 
"AMP PEAK 13(9Q34.3) WILD-TYPE"   "AMP PEAK 13(9Q34.3) MUTATED" 
                   TCGA-CG-4304                    TCGA-CG-4305 
  "AMP PEAK 13(9Q34.3) MUTATED" "AMP PEAK 13(9Q34.3) WILD-TYPE" 
                   TCGA-CG-4306                    TCGA-CG-4436 
"AMP PEAK 13(9Q34.3) WILD-TYPE"   "AMP PEAK 13(9Q34.3) MUTATED" 
                   TCGA-CG-4437                    TCGA-CG-4438 
"AMP PEAK 13(9Q34.3) WILD-TYPE" "AMP PEAK 13(9Q34.3) WILD-TYPE" 
                   TCGA-CG-4440                    TCGA-CG-4441 
"AMP PEAK 13(9Q34.3) WILD-TYPE" "AMP PEAK 13(9Q34.3) WILD-TYPE" 
                   TCGA-CG-4443                    TCGA-CG-4444 
"AMP PEAK 13(9Q34.3) WILD-TYPE" "AMP PEAK 13(9Q34.3) WILD-TYPE" 
                   TCGA-CG-4449                    TCGA-CG-4455 
  "AMP PEAK 13(9Q34.3) MUTATED" "AMP PEAK 13(9Q34.3) WILD-TYPE" 
                   TCGA-CG-4460                    TCGA-CG-4462 
"AMP PEAK 13(9Q34.3) WILD-TYPE" "AMP PEAK 13(9Q34.3) WILD-TYPE" 
                   TCGA-CG-4465                    TCGA-CG-4466 
"AMP PEAK 13(9Q34.3) WILD-TYPE"   "AMP PEAK 13(9Q34.3) MUTATED" 
                   TCGA-CG-4469                    TCGA-CG-4472 
"AMP PEAK 13(9Q34.3) WILD-TYPE" "AMP PEAK 13(9Q34.3) WILD-TYPE" 
                   TCGA-CG-4474                    TCGA-CG-4477 
"AMP PEAK 13(9Q34.3) WILD-TYPE" "AMP PEAK 13(9Q34.3) WILD-TYPE" 
                   TCGA-CG-5716                    TCGA-CG-5717 
"AMP PEAK 13(9Q34.3) WILD-TYPE" "AMP PEAK 13(9Q34.3) WILD-TYPE" 
                   TCGA-CG-5718                    TCGA-CG-5719 
  "AMP PEAK 13(9Q34.3) MUTATED" "AMP PEAK 13(9Q34.3) WILD-TYPE" 
                   TCGA-CG-5720                    TCGA-CG-5721 
"AMP PEAK 13(9Q34.3) WILD-TYPE" "AMP PEAK 13(9Q34.3) WILD-TYPE" 
                   TCGA-CG-5722                    TCGA-CG-5723 
"AMP PEAK 13(9Q34.3) WILD-TYPE" "AMP PEAK 13(9Q34.3) WILD-TYPE" 
                   TCGA-CG-5724                    TCGA-CG-5725 
"AMP PEAK 13(9Q34.3) WILD-TYPE" "AMP PEAK 13(9Q34.3) WILD-TYPE" 
                   TCGA-CG-5726                    TCGA-CG-5727 
"AMP PEAK 13(9Q34.3) WILD-TYPE" "AMP PEAK 13(9Q34.3) WILD-TYPE" 
                   TCGA-CG-5728                    TCGA-CG-5730 
"AMP PEAK 13(9Q34.3) WILD-TYPE" "AMP PEAK 13(9Q34.3) WILD-TYPE" 
                   TCGA-CG-5732                    TCGA-CG-5733 
"AMP PEAK 13(9Q34.3) WILD-TYPE" "AMP PEAK 13(9Q34.3) WILD-TYPE" 
                   TCGA-CG-5734                    TCGA-D7-5577 
"AMP PEAK 13(9Q34.3) WILD-TYPE" "AMP PEAK 13(9Q34.3) WILD-TYPE" 
                   TCGA-D7-5578                    TCGA-D7-5579 
  "AMP PEAK 13(9Q34.3) MUTATED"   "AMP PEAK 13(9Q34.3) MUTATED" 
                   TCGA-D7-6518                    TCGA-D7-6519 
"AMP PEAK 13(9Q34.3) WILD-TYPE" "AMP PEAK 13(9Q34.3) WILD-TYPE" 
                   TCGA-D7-6520                    TCGA-D7-6521 
"AMP PEAK 13(9Q34.3) WILD-TYPE" "AMP PEAK 13(9Q34.3) WILD-TYPE" 
                   TCGA-D7-6522                    TCGA-D7-6524 
"AMP PEAK 13(9Q34.3) WILD-TYPE" "AMP PEAK 13(9Q34.3) WILD-TYPE" 
                   TCGA-D7-6525                    TCGA-D7-6526 
"AMP PEAK 13(9Q34.3) WILD-TYPE"   "AMP PEAK 13(9Q34.3) MUTATED" 
                   TCGA-D7-6527                    TCGA-D7-6528 
"AMP PEAK 13(9Q34.3) WILD-TYPE"   "AMP PEAK 13(9Q34.3) MUTATED" 
                   TCGA-D7-6815                    TCGA-D7-6817 
"AMP PEAK 13(9Q34.3) WILD-TYPE" "AMP PEAK 13(9Q34.3) WILD-TYPE" 
                   TCGA-D7-6818                    TCGA-D7-6820 
  "AMP PEAK 13(9Q34.3) MUTATED"   "AMP PEAK 13(9Q34.3) MUTATED" 
                   TCGA-D7-6822                    TCGA-EQ-5647 
"AMP PEAK 13(9Q34.3) WILD-TYPE"   "AMP PEAK 13(9Q34.3) MUTATED" 
                   TCGA-EQ-8122                    TCGA-F1-6177 
"AMP PEAK 13(9Q34.3) WILD-TYPE" "AMP PEAK 13(9Q34.3) WILD-TYPE" 
                   TCGA-F1-6874                    TCGA-F1-6875 
"AMP PEAK 13(9Q34.3) WILD-TYPE"   "AMP PEAK 13(9Q34.3) MUTATED" 
                   TCGA-FP-7735                    TCGA-FP-7829 
"AMP PEAK 13(9Q34.3) WILD-TYPE" "AMP PEAK 13(9Q34.3) WILD-TYPE" 
                   TCGA-FP-7916                    TCGA-FP-7998 
"AMP PEAK 13(9Q34.3) WILD-TYPE" "AMP PEAK 13(9Q34.3) WILD-TYPE" 
                   TCGA-HJ-7597                    TCGA-IN-7806 
  "AMP PEAK 13(9Q34.3) MUTATED" "AMP PEAK 13(9Q34.3) WILD-TYPE" 
                   TCGA-IN-7808                    TCGA-IP-7968 
  "AMP PEAK 13(9Q34.3) MUTATED" "AMP PEAK 13(9Q34.3) WILD-TYPE" 
[1] "hr=" "2.1"
D13V2, continuous
D13V3, binary
[1] "tbl2"
                               cls
clus                            [,1] [,2]
  AMP PEAK 13(9Q34.3) MUTATED     16   23
  AMP PEAK 13(9Q34.3) WILD-TYPE   49   73
        clus
vv       AMP PEAK 13(9Q34.3) MUTATED AMP PEAK 13(9Q34.3) WILD-TYPE
  FEMALE                          16                            49
  MALE                            23                            73
D13V4, multiclass
D13V5, multiclass
    clus
vv   AMP PEAK 13(9Q34.3) MUTATED AMP PEAK 13(9Q34.3) WILD-TYPE
  T1                           2                             4
  T2                          13                            40
  T3                          16                            43
  T4                           4                            29
D13V6, multiclass
    clus
vv   AMP PEAK 13(9Q34.3) MUTATED AMP PEAK 13(9Q34.3) WILD-TYPE
  N0                          13                            37
  N1                          15                            42
  N2                           3                            21
  N3                           5                            14
D13V7, multiclass
    clus
vv   AMP PEAK 13(9Q34.3) MUTATED AMP PEAK 13(9Q34.3) WILD-TYPE
  M0                          34                            98
  M1                           3                            15
  MX                           2                             9
D13V8, multiclass
     clus
vv    AMP PEAK 13(9Q34.3) MUTATED AMP PEAK 13(9Q34.3) WILD-TYPE
  I                             8                            17
  II                           13                            30
  III                           7                            41
  IV                            5                            24
D13V9, binary
[1] "tbl2"
                               cls
clus                            [,1] [,2]
  AMP PEAK 13(9Q34.3) MUTATED     36    3
  AMP PEAK 13(9Q34.3) WILD-TYPE  120    2
     clus
vv    AMP PEAK 13(9Q34.3) MUTATED AMP PEAK 13(9Q34.3) WILD-TYPE
  NO                            3                             2
  YES                          36                           120

Clustering(14) Variable = Amp Peak 14(10q26.13) mutation analysis
D14V1, survival
                     TCGA-B7-5816                      TCGA-B7-5818 
"AMP PEAK 14(10Q26.13) WILD-TYPE" "AMP PEAK 14(10Q26.13) WILD-TYPE" 
                     TCGA-BR-6452                      TCGA-BR-6455 
"AMP PEAK 14(10Q26.13) WILD-TYPE" "AMP PEAK 14(10Q26.13) WILD-TYPE" 
                     TCGA-BR-6457                      TCGA-BR-6458 
  "AMP PEAK 14(10Q26.13) MUTATED" "AMP PEAK 14(10Q26.13) WILD-TYPE" 
                     TCGA-BR-6563                      TCGA-BR-6564 
"AMP PEAK 14(10Q26.13) WILD-TYPE"   "AMP PEAK 14(10Q26.13) MUTATED" 
                     TCGA-BR-6565                      TCGA-BR-6566 
"AMP PEAK 14(10Q26.13) WILD-TYPE" "AMP PEAK 14(10Q26.13) WILD-TYPE" 
                     TCGA-BR-6705                      TCGA-BR-6706 
"AMP PEAK 14(10Q26.13) WILD-TYPE" "AMP PEAK 14(10Q26.13) WILD-TYPE" 
                     TCGA-BR-6707                      TCGA-BR-6709 
"AMP PEAK 14(10Q26.13) WILD-TYPE" "AMP PEAK 14(10Q26.13) WILD-TYPE" 
                     TCGA-BR-6710                      TCGA-BR-6801 
"AMP PEAK 14(10Q26.13) WILD-TYPE" "AMP PEAK 14(10Q26.13) WILD-TYPE" 
                     TCGA-BR-6802                      TCGA-BR-6803 
"AMP PEAK 14(10Q26.13) WILD-TYPE"   "AMP PEAK 14(10Q26.13) MUTATED" 
                     TCGA-BR-6852                      TCGA-BR-7196 
"AMP PEAK 14(10Q26.13) WILD-TYPE" "AMP PEAK 14(10Q26.13) WILD-TYPE" 
                     TCGA-BR-7197                      TCGA-BR-7703 
  "AMP PEAK 14(10Q26.13) MUTATED" "AMP PEAK 14(10Q26.13) WILD-TYPE" 
                     TCGA-BR-7704                      TCGA-BR-7707 
  "AMP PEAK 14(10Q26.13) MUTATED" "AMP PEAK 14(10Q26.13) WILD-TYPE" 
                     TCGA-BR-7715                      TCGA-BR-7716 
  "AMP PEAK 14(10Q26.13) MUTATED"   "AMP PEAK 14(10Q26.13) MUTATED" 
                     TCGA-BR-7717                      TCGA-BR-7722 
"AMP PEAK 14(10Q26.13) WILD-TYPE" "AMP PEAK 14(10Q26.13) WILD-TYPE" 
                     TCGA-BR-7723                      TCGA-BR-7851 
"AMP PEAK 14(10Q26.13) WILD-TYPE" "AMP PEAK 14(10Q26.13) WILD-TYPE" 
                     TCGA-BR-7901                      TCGA-BR-7957 
"AMP PEAK 14(10Q26.13) WILD-TYPE" "AMP PEAK 14(10Q26.13) WILD-TYPE" 
                     TCGA-BR-7958                      TCGA-BR-7959 
"AMP PEAK 14(10Q26.13) WILD-TYPE" "AMP PEAK 14(10Q26.13) WILD-TYPE" 
                     TCGA-BR-8059                      TCGA-BR-8060 
"AMP PEAK 14(10Q26.13) WILD-TYPE" "AMP PEAK 14(10Q26.13) WILD-TYPE" 
                     TCGA-BR-8077                      TCGA-BR-8078 
"AMP PEAK 14(10Q26.13) WILD-TYPE" "AMP PEAK 14(10Q26.13) WILD-TYPE" 
                     TCGA-BR-8080                      TCGA-BR-8081 
"AMP PEAK 14(10Q26.13) WILD-TYPE" "AMP PEAK 14(10Q26.13) WILD-TYPE" 
                     TCGA-BR-8284                      TCGA-BR-8285 
"AMP PEAK 14(10Q26.13) WILD-TYPE" "AMP PEAK 14(10Q26.13) WILD-TYPE" 
                     TCGA-BR-8286                      TCGA-BR-8289 
"AMP PEAK 14(10Q26.13) WILD-TYPE" "AMP PEAK 14(10Q26.13) WILD-TYPE" 
                     TCGA-BR-8291                      TCGA-BR-8295 
"AMP PEAK 14(10Q26.13) WILD-TYPE" "AMP PEAK 14(10Q26.13) WILD-TYPE" 
                     TCGA-BR-8296                      TCGA-BR-8297 
"AMP PEAK 14(10Q26.13) WILD-TYPE" "AMP PEAK 14(10Q26.13) WILD-TYPE" 
                     TCGA-CD-5798                      TCGA-CD-5799 
"AMP PEAK 14(10Q26.13) WILD-TYPE" "AMP PEAK 14(10Q26.13) WILD-TYPE" 
                     TCGA-CD-5800                      TCGA-CD-5801 
"AMP PEAK 14(10Q26.13) WILD-TYPE"   "AMP PEAK 14(10Q26.13) MUTATED" 
                     TCGA-CD-5802                      TCGA-CD-5803 
"AMP PEAK 14(10Q26.13) WILD-TYPE" "AMP PEAK 14(10Q26.13) WILD-TYPE" 
                     TCGA-CG-4300                      TCGA-CG-4301 
  "AMP PEAK 14(10Q26.13) MUTATED" "AMP PEAK 14(10Q26.13) WILD-TYPE" 
                     TCGA-CG-4304                      TCGA-CG-4305 
  "AMP PEAK 14(10Q26.13) MUTATED" "AMP PEAK 14(10Q26.13) WILD-TYPE" 
                     TCGA-CG-4306                      TCGA-CG-4436 
"AMP PEAK 14(10Q26.13) WILD-TYPE" "AMP PEAK 14(10Q26.13) WILD-TYPE" 
                     TCGA-CG-4437                      TCGA-CG-4438 
"AMP PEAK 14(10Q26.13) WILD-TYPE" "AMP PEAK 14(10Q26.13) WILD-TYPE" 
                     TCGA-CG-4440                      TCGA-CG-4441 
"AMP PEAK 14(10Q26.13) WILD-TYPE" "AMP PEAK 14(10Q26.13) WILD-TYPE" 
                     TCGA-CG-4443                      TCGA-CG-4444 
  "AMP PEAK 14(10Q26.13) MUTATED" "AMP PEAK 14(10Q26.13) WILD-TYPE" 
                     TCGA-CG-4449                      TCGA-CG-4455 
  "AMP PEAK 14(10Q26.13) MUTATED" "AMP PEAK 14(10Q26.13) WILD-TYPE" 
                     TCGA-CG-4460                      TCGA-CG-4462 
"AMP PEAK 14(10Q26.13) WILD-TYPE" "AMP PEAK 14(10Q26.13) WILD-TYPE" 
                     TCGA-CG-4465                      TCGA-CG-4466 
"AMP PEAK 14(10Q26.13) WILD-TYPE" "AMP PEAK 14(10Q26.13) WILD-TYPE" 
                     TCGA-CG-4469                      TCGA-CG-4472 
  "AMP PEAK 14(10Q26.13) MUTATED"   "AMP PEAK 14(10Q26.13) MUTATED" 
                     TCGA-CG-4474                      TCGA-CG-4477 
"AMP PEAK 14(10Q26.13) WILD-TYPE" "AMP PEAK 14(10Q26.13) WILD-TYPE" 
                     TCGA-CG-5716                      TCGA-CG-5717 
"AMP PEAK 14(10Q26.13) WILD-TYPE" "AMP PEAK 14(10Q26.13) WILD-TYPE" 
                     TCGA-CG-5718                      TCGA-CG-5719 
  "AMP PEAK 14(10Q26.13) MUTATED" "AMP PEAK 14(10Q26.13) WILD-TYPE" 
                     TCGA-CG-5720                      TCGA-CG-5721 
"AMP PEAK 14(10Q26.13) WILD-TYPE" "AMP PEAK 14(10Q26.13) WILD-TYPE" 
                     TCGA-CG-5722                      TCGA-CG-5723 
"AMP PEAK 14(10Q26.13) WILD-TYPE" "AMP PEAK 14(10Q26.13) WILD-TYPE" 
                     TCGA-CG-5724                      TCGA-CG-5725 
"AMP PEAK 14(10Q26.13) WILD-TYPE" "AMP PEAK 14(10Q26.13) WILD-TYPE" 
                     TCGA-CG-5726                      TCGA-CG-5727 
"AMP PEAK 14(10Q26.13) WILD-TYPE" "AMP PEAK 14(10Q26.13) WILD-TYPE" 
                     TCGA-CG-5728                      TCGA-CG-5730 
"AMP PEAK 14(10Q26.13) WILD-TYPE"   "AMP PEAK 14(10Q26.13) MUTATED" 
                     TCGA-CG-5732                      TCGA-CG-5733 
  "AMP PEAK 14(10Q26.13) MUTATED" "AMP PEAK 14(10Q26.13) WILD-TYPE" 
                     TCGA-CG-5734                      TCGA-D7-5577 
"AMP PEAK 14(10Q26.13) WILD-TYPE" "AMP PEAK 14(10Q26.13) WILD-TYPE" 
                     TCGA-D7-5578                      TCGA-D7-5579 
"AMP PEAK 14(10Q26.13) WILD-TYPE" "AMP PEAK 14(10Q26.13) WILD-TYPE" 
                     TCGA-D7-6518                      TCGA-D7-6519 
"AMP PEAK 14(10Q26.13) WILD-TYPE"   "AMP PEAK 14(10Q26.13) MUTATED" 
                     TCGA-D7-6520                      TCGA-D7-6521 
  "AMP PEAK 14(10Q26.13) MUTATED" "AMP PEAK 14(10Q26.13) WILD-TYPE" 
                     TCGA-D7-6522                      TCGA-D7-6524 
"AMP PEAK 14(10Q26.13) WILD-TYPE" "AMP PEAK 14(10Q26.13) WILD-TYPE" 
                     TCGA-D7-6525                      TCGA-D7-6526 
"AMP PEAK 14(10Q26.13) WILD-TYPE"   "AMP PEAK 14(10Q26.13) MUTATED" 
                     TCGA-D7-6527                      TCGA-D7-6528 
"AMP PEAK 14(10Q26.13) WILD-TYPE"   "AMP PEAK 14(10Q26.13) MUTATED" 
                     TCGA-D7-6815                      TCGA-D7-6817 
"AMP PEAK 14(10Q26.13) WILD-TYPE" "AMP PEAK 14(10Q26.13) WILD-TYPE" 
                     TCGA-D7-6818                      TCGA-D7-6820 
  "AMP PEAK 14(10Q26.13) MUTATED" "AMP PEAK 14(10Q26.13) WILD-TYPE" 
                     TCGA-D7-6822                      TCGA-EQ-5647 
"AMP PEAK 14(10Q26.13) WILD-TYPE"   "AMP PEAK 14(10Q26.13) MUTATED" 
                     TCGA-EQ-8122                      TCGA-F1-6177 
"AMP PEAK 14(10Q26.13) WILD-TYPE" "AMP PEAK 14(10Q26.13) WILD-TYPE" 
                     TCGA-F1-6874                      TCGA-F1-6875 
"AMP PEAK 14(10Q26.13) WILD-TYPE"   "AMP PEAK 14(10Q26.13) MUTATED" 
                     TCGA-FP-7735                      TCGA-FP-7829 
  "AMP PEAK 14(10Q26.13) MUTATED" "AMP PEAK 14(10Q26.13) WILD-TYPE" 
                     TCGA-FP-7916                      TCGA-FP-7998 
"AMP PEAK 14(10Q26.13) WILD-TYPE" "AMP PEAK 14(10Q26.13) WILD-TYPE" 
                     TCGA-HJ-7597                      TCGA-IN-7806 
"AMP PEAK 14(10Q26.13) WILD-TYPE" "AMP PEAK 14(10Q26.13) WILD-TYPE" 
                     TCGA-IN-7808                      TCGA-IP-7968 
"AMP PEAK 14(10Q26.13) WILD-TYPE" "AMP PEAK 14(10Q26.13) WILD-TYPE" 
                     TCGA-B7-5816                      TCGA-B7-5818 
"AMP PEAK 14(10Q26.13) WILD-TYPE" "AMP PEAK 14(10Q26.13) WILD-TYPE" 
                     TCGA-BR-6452                      TCGA-BR-6455 
"AMP PEAK 14(10Q26.13) WILD-TYPE" "AMP PEAK 14(10Q26.13) WILD-TYPE" 
                     TCGA-BR-6457                      TCGA-BR-6458 
  "AMP PEAK 14(10Q26.13) MUTATED" "AMP PEAK 14(10Q26.13) WILD-TYPE" 
                     TCGA-BR-6563                      TCGA-BR-6564 
"AMP PEAK 14(10Q26.13) WILD-TYPE"   "AMP PEAK 14(10Q26.13) MUTATED" 
                     TCGA-BR-6565                      TCGA-BR-6566 
"AMP PEAK 14(10Q26.13) WILD-TYPE" "AMP PEAK 14(10Q26.13) WILD-TYPE" 
                     TCGA-BR-6705                      TCGA-BR-6706 
"AMP PEAK 14(10Q26.13) WILD-TYPE" "AMP PEAK 14(10Q26.13) WILD-TYPE" 
                     TCGA-BR-6707                      TCGA-BR-6709 
"AMP PEAK 14(10Q26.13) WILD-TYPE" "AMP PEAK 14(10Q26.13) WILD-TYPE" 
                     TCGA-BR-6710                      TCGA-BR-6801 
"AMP PEAK 14(10Q26.13) WILD-TYPE" "AMP PEAK 14(10Q26.13) WILD-TYPE" 
                     TCGA-BR-6802                      TCGA-BR-6803 
"AMP PEAK 14(10Q26.13) WILD-TYPE"   "AMP PEAK 14(10Q26.13) MUTATED" 
                     TCGA-BR-6852                      TCGA-BR-7196 
"AMP PEAK 14(10Q26.13) WILD-TYPE" "AMP PEAK 14(10Q26.13) WILD-TYPE" 
                     TCGA-BR-7197                      TCGA-BR-7703 
  "AMP PEAK 14(10Q26.13) MUTATED" "AMP PEAK 14(10Q26.13) WILD-TYPE" 
                     TCGA-BR-7704                      TCGA-BR-7707 
  "AMP PEAK 14(10Q26.13) MUTATED" "AMP PEAK 14(10Q26.13) WILD-TYPE" 
                     TCGA-BR-7715                      TCGA-BR-7716 
  "AMP PEAK 14(10Q26.13) MUTATED"   "AMP PEAK 14(10Q26.13) MUTATED" 
                     TCGA-BR-7717                      TCGA-BR-7722 
"AMP PEAK 14(10Q26.13) WILD-TYPE" "AMP PEAK 14(10Q26.13) WILD-TYPE" 
                     TCGA-BR-7723                      TCGA-BR-7851 
"AMP PEAK 14(10Q26.13) WILD-TYPE" "AMP PEAK 14(10Q26.13) WILD-TYPE" 
                     TCGA-BR-7901                      TCGA-BR-7957 
"AMP PEAK 14(10Q26.13) WILD-TYPE" "AMP PEAK 14(10Q26.13) WILD-TYPE" 
                     TCGA-BR-7958                      TCGA-BR-7959 
"AMP PEAK 14(10Q26.13) WILD-TYPE" "AMP PEAK 14(10Q26.13) WILD-TYPE" 
                     TCGA-BR-8059                      TCGA-BR-8060 
"AMP PEAK 14(10Q26.13) WILD-TYPE" "AMP PEAK 14(10Q26.13) WILD-TYPE" 
                     TCGA-BR-8077                      TCGA-BR-8078 
"AMP PEAK 14(10Q26.13) WILD-TYPE" "AMP PEAK 14(10Q26.13) WILD-TYPE" 
                     TCGA-BR-8080                      TCGA-BR-8081 
"AMP PEAK 14(10Q26.13) WILD-TYPE" "AMP PEAK 14(10Q26.13) WILD-TYPE" 
                     TCGA-BR-8284                      TCGA-BR-8285 
"AMP PEAK 14(10Q26.13) WILD-TYPE" "AMP PEAK 14(10Q26.13) WILD-TYPE" 
                     TCGA-BR-8286                      TCGA-BR-8289 
"AMP PEAK 14(10Q26.13) WILD-TYPE" "AMP PEAK 14(10Q26.13) WILD-TYPE" 
                     TCGA-BR-8291                      TCGA-BR-8295 
"AMP PEAK 14(10Q26.13) WILD-TYPE" "AMP PEAK 14(10Q26.13) WILD-TYPE" 
                     TCGA-BR-8296                      TCGA-BR-8297 
"AMP PEAK 14(10Q26.13) WILD-TYPE" "AMP PEAK 14(10Q26.13) WILD-TYPE" 
                     TCGA-CD-5798                      TCGA-CD-5799 
"AMP PEAK 14(10Q26.13) WILD-TYPE" "AMP PEAK 14(10Q26.13) WILD-TYPE" 
                     TCGA-CD-5800                      TCGA-CD-5801 
"AMP PEAK 14(10Q26.13) WILD-TYPE"   "AMP PEAK 14(10Q26.13) MUTATED" 
                     TCGA-CD-5802                      TCGA-CD-5803 
"AMP PEAK 14(10Q26.13) WILD-TYPE" "AMP PEAK 14(10Q26.13) WILD-TYPE" 
                     TCGA-CG-4300                      TCGA-CG-4301 
  "AMP PEAK 14(10Q26.13) MUTATED" "AMP PEAK 14(10Q26.13) WILD-TYPE" 
                     TCGA-CG-4304                      TCGA-CG-4305 
  "AMP PEAK 14(10Q26.13) MUTATED" "AMP PEAK 14(10Q26.13) WILD-TYPE" 
                     TCGA-CG-4306                      TCGA-CG-4436 
"AMP PEAK 14(10Q26.13) WILD-TYPE" "AMP PEAK 14(10Q26.13) WILD-TYPE" 
                     TCGA-CG-4437                      TCGA-CG-4438 
"AMP PEAK 14(10Q26.13) WILD-TYPE" "AMP PEAK 14(10Q26.13) WILD-TYPE" 
                     TCGA-CG-4440                      TCGA-CG-4441 
"AMP PEAK 14(10Q26.13) WILD-TYPE" "AMP PEAK 14(10Q26.13) WILD-TYPE" 
                     TCGA-CG-4443                      TCGA-CG-4444 
  "AMP PEAK 14(10Q26.13) MUTATED" "AMP PEAK 14(10Q26.13) WILD-TYPE" 
                     TCGA-CG-4449                      TCGA-CG-4455 
  "AMP PEAK 14(10Q26.13) MUTATED" "AMP PEAK 14(10Q26.13) WILD-TYPE" 
                     TCGA-CG-4460                      TCGA-CG-4462 
"AMP PEAK 14(10Q26.13) WILD-TYPE" "AMP PEAK 14(10Q26.13) WILD-TYPE" 
                     TCGA-CG-4465                      TCGA-CG-4466 
"AMP PEAK 14(10Q26.13) WILD-TYPE" "AMP PEAK 14(10Q26.13) WILD-TYPE" 
                     TCGA-CG-4469                      TCGA-CG-4472 
  "AMP PEAK 14(10Q26.13) MUTATED"   "AMP PEAK 14(10Q26.13) MUTATED" 
                     TCGA-CG-4474                      TCGA-CG-4477 
"AMP PEAK 14(10Q26.13) WILD-TYPE" "AMP PEAK 14(10Q26.13) WILD-TYPE" 
                     TCGA-CG-5716                      TCGA-CG-5717 
"AMP PEAK 14(10Q26.13) WILD-TYPE" "AMP PEAK 14(10Q26.13) WILD-TYPE" 
                     TCGA-CG-5718                      TCGA-CG-5719 
  "AMP PEAK 14(10Q26.13) MUTATED" "AMP PEAK 14(10Q26.13) WILD-TYPE" 
                     TCGA-CG-5720                      TCGA-CG-5721 
"AMP PEAK 14(10Q26.13) WILD-TYPE" "AMP PEAK 14(10Q26.13) WILD-TYPE" 
                     TCGA-CG-5722                      TCGA-CG-5723 
"AMP PEAK 14(10Q26.13) WILD-TYPE" "AMP PEAK 14(10Q26.13) WILD-TYPE" 
                     TCGA-CG-5724                      TCGA-CG-5725 
"AMP PEAK 14(10Q26.13) WILD-TYPE" "AMP PEAK 14(10Q26.13) WILD-TYPE" 
                     TCGA-CG-5726                      TCGA-CG-5727 
"AMP PEAK 14(10Q26.13) WILD-TYPE" "AMP PEAK 14(10Q26.13) WILD-TYPE" 
                     TCGA-CG-5728                      TCGA-CG-5730 
"AMP PEAK 14(10Q26.13) WILD-TYPE"   "AMP PEAK 14(10Q26.13) MUTATED" 
                     TCGA-CG-5732                      TCGA-CG-5733 
  "AMP PEAK 14(10Q26.13) MUTATED" "AMP PEAK 14(10Q26.13) WILD-TYPE" 
                     TCGA-CG-5734                      TCGA-D7-5577 
"AMP PEAK 14(10Q26.13) WILD-TYPE" "AMP PEAK 14(10Q26.13) WILD-TYPE" 
                     TCGA-D7-5578                      TCGA-D7-5579 
"AMP PEAK 14(10Q26.13) WILD-TYPE" "AMP PEAK 14(10Q26.13) WILD-TYPE" 
                     TCGA-D7-6518                      TCGA-D7-6519 
"AMP PEAK 14(10Q26.13) WILD-TYPE"   "AMP PEAK 14(10Q26.13) MUTATED" 
                     TCGA-D7-6520                      TCGA-D7-6521 
  "AMP PEAK 14(10Q26.13) MUTATED" "AMP PEAK 14(10Q26.13) WILD-TYPE" 
                     TCGA-D7-6522                      TCGA-D7-6524 
"AMP PEAK 14(10Q26.13) WILD-TYPE" "AMP PEAK 14(10Q26.13) WILD-TYPE" 
                     TCGA-D7-6525                      TCGA-D7-6526 
"AMP PEAK 14(10Q26.13) WILD-TYPE"   "AMP PEAK 14(10Q26.13) MUTATED" 
                     TCGA-D7-6527                      TCGA-D7-6528 
"AMP PEAK 14(10Q26.13) WILD-TYPE"   "AMP PEAK 14(10Q26.13) MUTATED" 
                     TCGA-D7-6815                      TCGA-D7-6817 
"AMP PEAK 14(10Q26.13) WILD-TYPE" "AMP PEAK 14(10Q26.13) WILD-TYPE" 
                     TCGA-D7-6818                      TCGA-D7-6820 
  "AMP PEAK 14(10Q26.13) MUTATED" "AMP PEAK 14(10Q26.13) WILD-TYPE" 
                     TCGA-D7-6822                      TCGA-EQ-5647 
"AMP PEAK 14(10Q26.13) WILD-TYPE"   "AMP PEAK 14(10Q26.13) MUTATED" 
                     TCGA-EQ-8122                      TCGA-F1-6177 
"AMP PEAK 14(10Q26.13) WILD-TYPE" "AMP PEAK 14(10Q26.13) WILD-TYPE" 
                     TCGA-F1-6874                      TCGA-F1-6875 
"AMP PEAK 14(10Q26.13) WILD-TYPE"   "AMP PEAK 14(10Q26.13) MUTATED" 
                     TCGA-FP-7735                      TCGA-FP-7829 
  "AMP PEAK 14(10Q26.13) MUTATED" "AMP PEAK 14(10Q26.13) WILD-TYPE" 
                     TCGA-FP-7916                      TCGA-FP-7998 
"AMP PEAK 14(10Q26.13) WILD-TYPE" "AMP PEAK 14(10Q26.13) WILD-TYPE" 
                     TCGA-HJ-7597                      TCGA-IN-7806 
"AMP PEAK 14(10Q26.13) WILD-TYPE" "AMP PEAK 14(10Q26.13) WILD-TYPE" 
                     TCGA-IN-7808                      TCGA-IP-7968 
"AMP PEAK 14(10Q26.13) WILD-TYPE" "AMP PEAK 14(10Q26.13) WILD-TYPE" 
                     TCGA-B7-5816                      TCGA-B7-5818 
"AMP PEAK 14(10Q26.13) WILD-TYPE" "AMP PEAK 14(10Q26.13) WILD-TYPE" 
                     TCGA-BR-6452                      TCGA-BR-6455 
"AMP PEAK 14(10Q26.13) WILD-TYPE" "AMP PEAK 14(10Q26.13) WILD-TYPE" 
                     TCGA-BR-6457                      TCGA-BR-6458 
  "AMP PEAK 14(10Q26.13) MUTATED" "AMP PEAK 14(10Q26.13) WILD-TYPE" 
                     TCGA-BR-6563                      TCGA-BR-6564 
"AMP PEAK 14(10Q26.13) WILD-TYPE"   "AMP PEAK 14(10Q26.13) MUTATED" 
                     TCGA-BR-6565                      TCGA-BR-6566 
"AMP PEAK 14(10Q26.13) WILD-TYPE" "AMP PEAK 14(10Q26.13) WILD-TYPE" 
                     TCGA-BR-6705                      TCGA-BR-6706 
"AMP PEAK 14(10Q26.13) WILD-TYPE" "AMP PEAK 14(10Q26.13) WILD-TYPE" 
                     TCGA-BR-6707                      TCGA-BR-6709 
"AMP PEAK 14(10Q26.13) WILD-TYPE" "AMP PEAK 14(10Q26.13) WILD-TYPE" 
                     TCGA-BR-6710                      TCGA-BR-6801 
"AMP PEAK 14(10Q26.13) WILD-TYPE" "AMP PEAK 14(10Q26.13) WILD-TYPE" 
                     TCGA-BR-6802                      TCGA-BR-6803 
"AMP PEAK 14(10Q26.13) WILD-TYPE"   "AMP PEAK 14(10Q26.13) MUTATED" 
                     TCGA-BR-6852                      TCGA-BR-7196 
"AMP PEAK 14(10Q26.13) WILD-TYPE" "AMP PEAK 14(10Q26.13) WILD-TYPE" 
                     TCGA-BR-7197                      TCGA-BR-7703 
  "AMP PEAK 14(10Q26.13) MUTATED" "AMP PEAK 14(10Q26.13) WILD-TYPE" 
                     TCGA-BR-7704                      TCGA-BR-7707 
  "AMP PEAK 14(10Q26.13) MUTATED" "AMP PEAK 14(10Q26.13) WILD-TYPE" 
                     TCGA-BR-7715                      TCGA-BR-7716 
  "AMP PEAK 14(10Q26.13) MUTATED"   "AMP PEAK 14(10Q26.13) MUTATED" 
                     TCGA-BR-7717                      TCGA-BR-7722 
"AMP PEAK 14(10Q26.13) WILD-TYPE" "AMP PEAK 14(10Q26.13) WILD-TYPE" 
                     TCGA-BR-7723                      TCGA-BR-7851 
"AMP PEAK 14(10Q26.13) WILD-TYPE" "AMP PEAK 14(10Q26.13) WILD-TYPE" 
                     TCGA-BR-7901                      TCGA-BR-7957 
"AMP PEAK 14(10Q26.13) WILD-TYPE" "AMP PEAK 14(10Q26.13) WILD-TYPE" 
                     TCGA-BR-7958                      TCGA-BR-7959 
"AMP PEAK 14(10Q26.13) WILD-TYPE" "AMP PEAK 14(10Q26.13) WILD-TYPE" 
                     TCGA-BR-8059                      TCGA-BR-8060 
"AMP PEAK 14(10Q26.13) WILD-TYPE" "AMP PEAK 14(10Q26.13) WILD-TYPE" 
                     TCGA-BR-8077                      TCGA-BR-8078 
"AMP PEAK 14(10Q26.13) WILD-TYPE" "AMP PEAK 14(10Q26.13) WILD-TYPE" 
                     TCGA-BR-8080                      TCGA-BR-8081 
"AMP PEAK 14(10Q26.13) WILD-TYPE" "AMP PEAK 14(10Q26.13) WILD-TYPE" 
                     TCGA-BR-8284                      TCGA-BR-8285 
"AMP PEAK 14(10Q26.13) WILD-TYPE" "AMP PEAK 14(10Q26.13) WILD-TYPE" 
                     TCGA-BR-8286                      TCGA-BR-8289 
"AMP PEAK 14(10Q26.13) WILD-TYPE" "AMP PEAK 14(10Q26.13) WILD-TYPE" 
                     TCGA-BR-8291                      TCGA-BR-8295 
"AMP PEAK 14(10Q26.13) WILD-TYPE" "AMP PEAK 14(10Q26.13) WILD-TYPE" 
                     TCGA-BR-8296                      TCGA-BR-8297 
"AMP PEAK 14(10Q26.13) WILD-TYPE" "AMP PEAK 14(10Q26.13) WILD-TYPE" 
                     TCGA-CD-5798                      TCGA-CD-5799 
"AMP PEAK 14(10Q26.13) WILD-TYPE" "AMP PEAK 14(10Q26.13) WILD-TYPE" 
                     TCGA-CD-5800                      TCGA-CD-5801 
"AMP PEAK 14(10Q26.13) WILD-TYPE"   "AMP PEAK 14(10Q26.13) MUTATED" 
                     TCGA-CD-5802                      TCGA-CD-5803 
"AMP PEAK 14(10Q26.13) WILD-TYPE" "AMP PEAK 14(10Q26.13) WILD-TYPE" 
                     TCGA-CG-4300                      TCGA-CG-4301 
  "AMP PEAK 14(10Q26.13) MUTATED" "AMP PEAK 14(10Q26.13) WILD-TYPE" 
                     TCGA-CG-4304                      TCGA-CG-4305 
  "AMP PEAK 14(10Q26.13) MUTATED" "AMP PEAK 14(10Q26.13) WILD-TYPE" 
                     TCGA-CG-4306                      TCGA-CG-4436 
"AMP PEAK 14(10Q26.13) WILD-TYPE" "AMP PEAK 14(10Q26.13) WILD-TYPE" 
                     TCGA-CG-4437                      TCGA-CG-4438 
"AMP PEAK 14(10Q26.13) WILD-TYPE" "AMP PEAK 14(10Q26.13) WILD-TYPE" 
                     TCGA-CG-4440                      TCGA-CG-4441 
"AMP PEAK 14(10Q26.13) WILD-TYPE" "AMP PEAK 14(10Q26.13) WILD-TYPE" 
                     TCGA-CG-4443                      TCGA-CG-4444 
  "AMP PEAK 14(10Q26.13) MUTATED" "AMP PEAK 14(10Q26.13) WILD-TYPE" 
                     TCGA-CG-4449                      TCGA-CG-4455 
  "AMP PEAK 14(10Q26.13) MUTATED" "AMP PEAK 14(10Q26.13) WILD-TYPE" 
                     TCGA-CG-4460                      TCGA-CG-4462 
"AMP PEAK 14(10Q26.13) WILD-TYPE" "AMP PEAK 14(10Q26.13) WILD-TYPE" 
                     TCGA-CG-4465                      TCGA-CG-4466 
"AMP PEAK 14(10Q26.13) WILD-TYPE" "AMP PEAK 14(10Q26.13) WILD-TYPE" 
                     TCGA-CG-4469                      TCGA-CG-4472 
  "AMP PEAK 14(10Q26.13) MUTATED"   "AMP PEAK 14(10Q26.13) MUTATED" 
                     TCGA-CG-4474                      TCGA-CG-4477 
"AMP PEAK 14(10Q26.13) WILD-TYPE" "AMP PEAK 14(10Q26.13) WILD-TYPE" 
                     TCGA-CG-5716                      TCGA-CG-5717 
"AMP PEAK 14(10Q26.13) WILD-TYPE" "AMP PEAK 14(10Q26.13) WILD-TYPE" 
                     TCGA-CG-5718                      TCGA-CG-5719 
  "AMP PEAK 14(10Q26.13) MUTATED" "AMP PEAK 14(10Q26.13) WILD-TYPE" 
                     TCGA-CG-5720                      TCGA-CG-5721 
"AMP PEAK 14(10Q26.13) WILD-TYPE" "AMP PEAK 14(10Q26.13) WILD-TYPE" 
                     TCGA-CG-5722                      TCGA-CG-5723 
"AMP PEAK 14(10Q26.13) WILD-TYPE" "AMP PEAK 14(10Q26.13) WILD-TYPE" 
                     TCGA-CG-5724                      TCGA-CG-5725 
"AMP PEAK 14(10Q26.13) WILD-TYPE" "AMP PEAK 14(10Q26.13) WILD-TYPE" 
                     TCGA-CG-5726                      TCGA-CG-5727 
"AMP PEAK 14(10Q26.13) WILD-TYPE" "AMP PEAK 14(10Q26.13) WILD-TYPE" 
                     TCGA-CG-5728                      TCGA-CG-5730 
"AMP PEAK 14(10Q26.13) WILD-TYPE"   "AMP PEAK 14(10Q26.13) MUTATED" 
                     TCGA-CG-5732                      TCGA-CG-5733 
  "AMP PEAK 14(10Q26.13) MUTATED" "AMP PEAK 14(10Q26.13) WILD-TYPE" 
                     TCGA-CG-5734                      TCGA-D7-5577 
"AMP PEAK 14(10Q26.13) WILD-TYPE" "AMP PEAK 14(10Q26.13) WILD-TYPE" 
                     TCGA-D7-5578                      TCGA-D7-5579 
"AMP PEAK 14(10Q26.13) WILD-TYPE" "AMP PEAK 14(10Q26.13) WILD-TYPE" 
                     TCGA-D7-6518                      TCGA-D7-6519 
"AMP PEAK 14(10Q26.13) WILD-TYPE"   "AMP PEAK 14(10Q26.13) MUTATED" 
                     TCGA-D7-6520                      TCGA-D7-6521 
  "AMP PEAK 14(10Q26.13) MUTATED" "AMP PEAK 14(10Q26.13) WILD-TYPE" 
                     TCGA-D7-6522                      TCGA-D7-6524 
"AMP PEAK 14(10Q26.13) WILD-TYPE" "AMP PEAK 14(10Q26.13) WILD-TYPE" 
                     TCGA-D7-6525                      TCGA-D7-6526 
"AMP PEAK 14(10Q26.13) WILD-TYPE"   "AMP PEAK 14(10Q26.13) MUTATED" 
                     TCGA-D7-6527                      TCGA-D7-6528 
"AMP PEAK 14(10Q26.13) WILD-TYPE"   "AMP PEAK 14(10Q26.13) MUTATED" 
                     TCGA-D7-6815                      TCGA-D7-6817 
"AMP PEAK 14(10Q26.13) WILD-TYPE" "AMP PEAK 14(10Q26.13) WILD-TYPE" 
                     TCGA-D7-6818                      TCGA-D7-6820 
  "AMP PEAK 14(10Q26.13) MUTATED" "AMP PEAK 14(10Q26.13) WILD-TYPE" 
                     TCGA-D7-6822                      TCGA-EQ-5647 
"AMP PEAK 14(10Q26.13) WILD-TYPE"   "AMP PEAK 14(10Q26.13) MUTATED" 
                     TCGA-EQ-8122                      TCGA-F1-6177 
"AMP PEAK 14(10Q26.13) WILD-TYPE" "AMP PEAK 14(10Q26.13) WILD-TYPE" 
                     TCGA-F1-6874                      TCGA-F1-6875 
"AMP PEAK 14(10Q26.13) WILD-TYPE"   "AMP PEAK 14(10Q26.13) MUTATED" 
                     TCGA-FP-7735                      TCGA-FP-7829 
  "AMP PEAK 14(10Q26.13) MUTATED" "AMP PEAK 14(10Q26.13) WILD-TYPE" 
                     TCGA-FP-7916                      TCGA-FP-7998 
"AMP PEAK 14(10Q26.13) WILD-TYPE" "AMP PEAK 14(10Q26.13) WILD-TYPE" 
                     TCGA-HJ-7597                      TCGA-IN-7806 
"AMP PEAK 14(10Q26.13) WILD-TYPE" "AMP PEAK 14(10Q26.13) WILD-TYPE" 
                     TCGA-IN-7808                      TCGA-IP-7968 
"AMP PEAK 14(10Q26.13) WILD-TYPE" "AMP PEAK 14(10Q26.13) WILD-TYPE" 
[1] "hr=" "2.7"
D14V2, continuous
D14V3, binary
[1] "tbl2"
                                 cls
clus                              [,1] [,2]
  AMP PEAK 14(10Q26.13) MUTATED     15   18
  AMP PEAK 14(10Q26.13) WILD-TYPE   50   78
        clus
vv       AMP PEAK 14(10Q26.13) MUTATED AMP PEAK 14(10Q26.13) WILD-TYPE
  FEMALE                            15                              50
  MALE                              18                              78
D14V4, multiclass
D14V5, multiclass
    clus
vv   AMP PEAK 14(10Q26.13) MUTATED AMP PEAK 14(10Q26.13) WILD-TYPE
  T1                             1                               5
  T2                            12                              41
  T3                            13                              46
  T4                             4                              29
D14V6, multiclass
    clus
vv   AMP PEAK 14(10Q26.13) MUTATED AMP PEAK 14(10Q26.13) WILD-TYPE
  N0                            11                              39
  N1                            12                              45
  N2                             4                              20
  N3                             4                              15
D14V7, multiclass
    clus
vv   AMP PEAK 14(10Q26.13) MUTATED AMP PEAK 14(10Q26.13) WILD-TYPE
  M0                            29                             103
  M1                             2                              16
  MX                             2                               9
D14V8, multiclass
     clus
vv    AMP PEAK 14(10Q26.13) MUTATED AMP PEAK 14(10Q26.13) WILD-TYPE
  I                               6                              19
  II                              8                              35
  III                             8                              40
  IV                              8                              21
D14V9, binary
[1] "tbl2"
                                 cls
clus                              [,1] [,2]
  AMP PEAK 14(10Q26.13) MUTATED     31    2
  AMP PEAK 14(10Q26.13) WILD-TYPE  125    3
     clus
vv    AMP PEAK 14(10Q26.13) MUTATED AMP PEAK 14(10Q26.13) WILD-TYPE
  NO                              2                               3
  YES                            31                             125

Clustering(15) Variable = Amp Peak 15(11p13) mutation analysis
D15V1, survival
                  TCGA-B7-5816                   TCGA-B7-5818 
"AMP PEAK 15(11P13) WILD-TYPE"   "AMP PEAK 15(11P13) MUTATED" 
                  TCGA-BR-6452                   TCGA-BR-6455 
"AMP PEAK 15(11P13) WILD-TYPE"   "AMP PEAK 15(11P13) MUTATED" 
                  TCGA-BR-6457                   TCGA-BR-6458 
"AMP PEAK 15(11P13) WILD-TYPE"   "AMP PEAK 15(11P13) MUTATED" 
                  TCGA-BR-6563                   TCGA-BR-6564 
"AMP PEAK 15(11P13) WILD-TYPE"   "AMP PEAK 15(11P13) MUTATED" 
                  TCGA-BR-6565                   TCGA-BR-6566 
"AMP PEAK 15(11P13) WILD-TYPE" "AMP PEAK 15(11P13) WILD-TYPE" 
                  TCGA-BR-6705                   TCGA-BR-6706 
"AMP PEAK 15(11P13) WILD-TYPE" "AMP PEAK 15(11P13) WILD-TYPE" 
                  TCGA-BR-6707                   TCGA-BR-6709 
"AMP PEAK 15(11P13) WILD-TYPE" "AMP PEAK 15(11P13) WILD-TYPE" 
                  TCGA-BR-6710                   TCGA-BR-6801 
"AMP PEAK 15(11P13) WILD-TYPE" "AMP PEAK 15(11P13) WILD-TYPE" 
                  TCGA-BR-6802                   TCGA-BR-6803 
"AMP PEAK 15(11P13) WILD-TYPE" "AMP PEAK 15(11P13) WILD-TYPE" 
                  TCGA-BR-6852                   TCGA-BR-7196 
"AMP PEAK 15(11P13) WILD-TYPE" "AMP PEAK 15(11P13) WILD-TYPE" 
                  TCGA-BR-7197                   TCGA-BR-7703 
"AMP PEAK 15(11P13) WILD-TYPE" "AMP PEAK 15(11P13) WILD-TYPE" 
                  TCGA-BR-7704                   TCGA-BR-7707 
"AMP PEAK 15(11P13) WILD-TYPE" "AMP PEAK 15(11P13) WILD-TYPE" 
                  TCGA-BR-7715                   TCGA-BR-7716 
"AMP PEAK 15(11P13) WILD-TYPE" "AMP PEAK 15(11P13) WILD-TYPE" 
                  TCGA-BR-7717                   TCGA-BR-7722 
  "AMP PEAK 15(11P13) MUTATED" "AMP PEAK 15(11P13) WILD-TYPE" 
                  TCGA-BR-7723                   TCGA-BR-7851 
"AMP PEAK 15(11P13) WILD-TYPE" "AMP PEAK 15(11P13) WILD-TYPE" 
                  TCGA-BR-7901                   TCGA-BR-7957 
  "AMP PEAK 15(11P13) MUTATED" "AMP PEAK 15(11P13) WILD-TYPE" 
                  TCGA-BR-7958                   TCGA-BR-7959 
"AMP PEAK 15(11P13) WILD-TYPE" "AMP PEAK 15(11P13) WILD-TYPE" 
                  TCGA-BR-8059                   TCGA-BR-8060 
"AMP PEAK 15(11P13) WILD-TYPE" "AMP PEAK 15(11P13) WILD-TYPE" 
                  TCGA-BR-8077                   TCGA-BR-8078 
"AMP PEAK 15(11P13) WILD-TYPE" "AMP PEAK 15(11P13) WILD-TYPE" 
                  TCGA-BR-8080                   TCGA-BR-8081 
"AMP PEAK 15(11P13) WILD-TYPE" "AMP PEAK 15(11P13) WILD-TYPE" 
                  TCGA-BR-8284                   TCGA-BR-8285 
"AMP PEAK 15(11P13) WILD-TYPE" "AMP PEAK 15(11P13) WILD-TYPE" 
                  TCGA-BR-8286                   TCGA-BR-8289 
"AMP PEAK 15(11P13) WILD-TYPE" "AMP PEAK 15(11P13) WILD-TYPE" 
                  TCGA-BR-8291                   TCGA-BR-8295 
"AMP PEAK 15(11P13) WILD-TYPE" "AMP PEAK 15(11P13) WILD-TYPE" 
                  TCGA-BR-8296                   TCGA-BR-8297 
"AMP PEAK 15(11P13) WILD-TYPE" "AMP PEAK 15(11P13) WILD-TYPE" 
                  TCGA-CD-5798                   TCGA-CD-5799 
"AMP PEAK 15(11P13) WILD-TYPE" "AMP PEAK 15(11P13) WILD-TYPE" 
                  TCGA-CD-5800                   TCGA-CD-5801 
"AMP PEAK 15(11P13) WILD-TYPE" "AMP PEAK 15(11P13) WILD-TYPE" 
                  TCGA-CD-5802                   TCGA-CD-5803 
"AMP PEAK 15(11P13) WILD-TYPE" "AMP PEAK 15(11P13) WILD-TYPE" 
                  TCGA-CG-4300                   TCGA-CG-4301 
  "AMP PEAK 15(11P13) MUTATED" "AMP PEAK 15(11P13) WILD-TYPE" 
                  TCGA-CG-4304                   TCGA-CG-4305 
"AMP PEAK 15(11P13) WILD-TYPE" "AMP PEAK 15(11P13) WILD-TYPE" 
                  TCGA-CG-4306                   TCGA-CG-4436 
"AMP PEAK 15(11P13) WILD-TYPE" "AMP PEAK 15(11P13) WILD-TYPE" 
                  TCGA-CG-4437                   TCGA-CG-4438 
"AMP PEAK 15(11P13) WILD-TYPE"   "AMP PEAK 15(11P13) MUTATED" 
                  TCGA-CG-4440                   TCGA-CG-4441 
"AMP PEAK 15(11P13) WILD-TYPE" "AMP PEAK 15(11P13) WILD-TYPE" 
                  TCGA-CG-4443                   TCGA-CG-4444 
"AMP PEAK 15(11P13) WILD-TYPE" "AMP PEAK 15(11P13) WILD-TYPE" 
                  TCGA-CG-4449                   TCGA-CG-4455 
  "AMP PEAK 15(11P13) MUTATED" "AMP PEAK 15(11P13) WILD-TYPE" 
                  TCGA-CG-4460                   TCGA-CG-4462 
"AMP PEAK 15(11P13) WILD-TYPE" "AMP PEAK 15(11P13) WILD-TYPE" 
                  TCGA-CG-4465                   TCGA-CG-4466 
"AMP PEAK 15(11P13) WILD-TYPE" "AMP PEAK 15(11P13) WILD-TYPE" 
                  TCGA-CG-4469                   TCGA-CG-4472 
"AMP PEAK 15(11P13) WILD-TYPE"   "AMP PEAK 15(11P13) MUTATED" 
                  TCGA-CG-4474                   TCGA-CG-4477 
"AMP PEAK 15(11P13) WILD-TYPE" "AMP PEAK 15(11P13) WILD-TYPE" 
                  TCGA-CG-5716                   TCGA-CG-5717 
"AMP PEAK 15(11P13) WILD-TYPE"   "AMP PEAK 15(11P13) MUTATED" 
                  TCGA-CG-5718                   TCGA-CG-5719 
"AMP PEAK 15(11P13) WILD-TYPE" "AMP PEAK 15(11P13) WILD-TYPE" 
                  TCGA-CG-5720                   TCGA-CG-5721 
"AMP PEAK 15(11P13) WILD-TYPE" "AMP PEAK 15(11P13) WILD-TYPE" 
                  TCGA-CG-5722                   TCGA-CG-5723 
  "AMP PEAK 15(11P13) MUTATED" "AMP PEAK 15(11P13) WILD-TYPE" 
                  TCGA-CG-5724                   TCGA-CG-5725 
"AMP PEAK 15(11P13) WILD-TYPE" "AMP PEAK 15(11P13) WILD-TYPE" 
                  TCGA-CG-5726                   TCGA-CG-5727 
"AMP PEAK 15(11P13) WILD-TYPE" "AMP PEAK 15(11P13) WILD-TYPE" 
                  TCGA-CG-5728                   TCGA-CG-5730 
"AMP PEAK 15(11P13) WILD-TYPE" "AMP PEAK 15(11P13) WILD-TYPE" 
                  TCGA-CG-5732                   TCGA-CG-5733 
"AMP PEAK 15(11P13) WILD-TYPE" "AMP PEAK 15(11P13) WILD-TYPE" 
                  TCGA-CG-5734                   TCGA-D7-5577 
"AMP PEAK 15(11P13) WILD-TYPE" "AMP PEAK 15(11P13) WILD-TYPE" 
                  TCGA-D7-5578                   TCGA-D7-5579 
"AMP PEAK 15(11P13) WILD-TYPE" "AMP PEAK 15(11P13) WILD-TYPE" 
                  TCGA-D7-6518                   TCGA-D7-6519 
"AMP PEAK 15(11P13) WILD-TYPE" "AMP PEAK 15(11P13) WILD-TYPE" 
                  TCGA-D7-6520                   TCGA-D7-6521 
  "AMP PEAK 15(11P13) MUTATED" "AMP PEAK 15(11P13) WILD-TYPE" 
                  TCGA-D7-6522                   TCGA-D7-6524 
"AMP PEAK 15(11P13) WILD-TYPE" "AMP PEAK 15(11P13) WILD-TYPE" 
                  TCGA-D7-6525                   TCGA-D7-6526 
"AMP PEAK 15(11P13) WILD-TYPE" "AMP PEAK 15(11P13) WILD-TYPE" 
                  TCGA-D7-6527                   TCGA-D7-6528 
"AMP PEAK 15(11P13) WILD-TYPE" "AMP PEAK 15(11P13) WILD-TYPE" 
                  TCGA-D7-6815                   TCGA-D7-6817 
"AMP PEAK 15(11P13) WILD-TYPE" "AMP PEAK 15(11P13) WILD-TYPE" 
                  TCGA-D7-6818                   TCGA-D7-6820 
"AMP PEAK 15(11P13) WILD-TYPE" "AMP PEAK 15(11P13) WILD-TYPE" 
                  TCGA-D7-6822                   TCGA-EQ-5647 
  "AMP PEAK 15(11P13) MUTATED"   "AMP PEAK 15(11P13) MUTATED" 
                  TCGA-EQ-8122                   TCGA-F1-6177 
"AMP PEAK 15(11P13) WILD-TYPE" "AMP PEAK 15(11P13) WILD-TYPE" 
                  TCGA-F1-6874                   TCGA-F1-6875 
"AMP PEAK 15(11P13) WILD-TYPE" "AMP PEAK 15(11P13) WILD-TYPE" 
                  TCGA-FP-7735                   TCGA-FP-7829 
"AMP PEAK 15(11P13) WILD-TYPE" "AMP PEAK 15(11P13) WILD-TYPE" 
                  TCGA-FP-7916                   TCGA-FP-7998 
  "AMP PEAK 15(11P13) MUTATED" "AMP PEAK 15(11P13) WILD-TYPE" 
                  TCGA-HJ-7597                   TCGA-IN-7806 
"AMP PEAK 15(11P13) WILD-TYPE" "AMP PEAK 15(11P13) WILD-TYPE" 
                  TCGA-IN-7808                   TCGA-IP-7968 
  "AMP PEAK 15(11P13) MUTATED" "AMP PEAK 15(11P13) WILD-TYPE" 
                  TCGA-B7-5816                   TCGA-B7-5818 
"AMP PEAK 15(11P13) WILD-TYPE"   "AMP PEAK 15(11P13) MUTATED" 
                  TCGA-BR-6452                   TCGA-BR-6455 
"AMP PEAK 15(11P13) WILD-TYPE"   "AMP PEAK 15(11P13) MUTATED" 
                  TCGA-BR-6457                   TCGA-BR-6458 
"AMP PEAK 15(11P13) WILD-TYPE"   "AMP PEAK 15(11P13) MUTATED" 
                  TCGA-BR-6563                   TCGA-BR-6564 
"AMP PEAK 15(11P13) WILD-TYPE"   "AMP PEAK 15(11P13) MUTATED" 
                  TCGA-BR-6565                   TCGA-BR-6566 
"AMP PEAK 15(11P13) WILD-TYPE" "AMP PEAK 15(11P13) WILD-TYPE" 
                  TCGA-BR-6705                   TCGA-BR-6706 
"AMP PEAK 15(11P13) WILD-TYPE" "AMP PEAK 15(11P13) WILD-TYPE" 
                  TCGA-BR-6707                   TCGA-BR-6709 
"AMP PEAK 15(11P13) WILD-TYPE" "AMP PEAK 15(11P13) WILD-TYPE" 
                  TCGA-BR-6710                   TCGA-BR-6801 
"AMP PEAK 15(11P13) WILD-TYPE" "AMP PEAK 15(11P13) WILD-TYPE" 
                  TCGA-BR-6802                   TCGA-BR-6803 
"AMP PEAK 15(11P13) WILD-TYPE" "AMP PEAK 15(11P13) WILD-TYPE" 
                  TCGA-BR-6852                   TCGA-BR-7196 
"AMP PEAK 15(11P13) WILD-TYPE" "AMP PEAK 15(11P13) WILD-TYPE" 
                  TCGA-BR-7197                   TCGA-BR-7703 
"AMP PEAK 15(11P13) WILD-TYPE" "AMP PEAK 15(11P13) WILD-TYPE" 
                  TCGA-BR-7704                   TCGA-BR-7707 
"AMP PEAK 15(11P13) WILD-TYPE" "AMP PEAK 15(11P13) WILD-TYPE" 
                  TCGA-BR-7715                   TCGA-BR-7716 
"AMP PEAK 15(11P13) WILD-TYPE" "AMP PEAK 15(11P13) WILD-TYPE" 
                  TCGA-BR-7717                   TCGA-BR-7722 
  "AMP PEAK 15(11P13) MUTATED" "AMP PEAK 15(11P13) WILD-TYPE" 
                  TCGA-BR-7723                   TCGA-BR-7851 
"AMP PEAK 15(11P13) WILD-TYPE" "AMP PEAK 15(11P13) WILD-TYPE" 
                  TCGA-BR-7901                   TCGA-BR-7957 
  "AMP PEAK 15(11P13) MUTATED" "AMP PEAK 15(11P13) WILD-TYPE" 
                  TCGA-BR-7958                   TCGA-BR-7959 
"AMP PEAK 15(11P13) WILD-TYPE" "AMP PEAK 15(11P13) WILD-TYPE" 
                  TCGA-BR-8059                   TCGA-BR-8060 
"AMP PEAK 15(11P13) WILD-TYPE" "AMP PEAK 15(11P13) WILD-TYPE" 
                  TCGA-BR-8077                   TCGA-BR-8078 
"AMP PEAK 15(11P13) WILD-TYPE" "AMP PEAK 15(11P13) WILD-TYPE" 
                  TCGA-BR-8080                   TCGA-BR-8081 
"AMP PEAK 15(11P13) WILD-TYPE" "AMP PEAK 15(11P13) WILD-TYPE" 
                  TCGA-BR-8284                   TCGA-BR-8285 
"AMP PEAK 15(11P13) WILD-TYPE" "AMP PEAK 15(11P13) WILD-TYPE" 
                  TCGA-BR-8286                   TCGA-BR-8289 
"AMP PEAK 15(11P13) WILD-TYPE" "AMP PEAK 15(11P13) WILD-TYPE" 
                  TCGA-BR-8291                   TCGA-BR-8295 
"AMP PEAK 15(11P13) WILD-TYPE" "AMP PEAK 15(11P13) WILD-TYPE" 
                  TCGA-BR-8296                   TCGA-BR-8297 
"AMP PEAK 15(11P13) WILD-TYPE" "AMP PEAK 15(11P13) WILD-TYPE" 
                  TCGA-CD-5798                   TCGA-CD-5799 
"AMP PEAK 15(11P13) WILD-TYPE" "AMP PEAK 15(11P13) WILD-TYPE" 
                  TCGA-CD-5800                   TCGA-CD-5801 
"AMP PEAK 15(11P13) WILD-TYPE" "AMP PEAK 15(11P13) WILD-TYPE" 
                  TCGA-CD-5802                   TCGA-CD-5803 
"AMP PEAK 15(11P13) WILD-TYPE" "AMP PEAK 15(11P13) WILD-TYPE" 
                  TCGA-CG-4300                   TCGA-CG-4301 
  "AMP PEAK 15(11P13) MUTATED" "AMP PEAK 15(11P13) WILD-TYPE" 
                  TCGA-CG-4304                   TCGA-CG-4305 
"AMP PEAK 15(11P13) WILD-TYPE" "AMP PEAK 15(11P13) WILD-TYPE" 
                  TCGA-CG-4306                   TCGA-CG-4436 
"AMP PEAK 15(11P13) WILD-TYPE" "AMP PEAK 15(11P13) WILD-TYPE" 
                  TCGA-CG-4437                   TCGA-CG-4438 
"AMP PEAK 15(11P13) WILD-TYPE"   "AMP PEAK 15(11P13) MUTATED" 
                  TCGA-CG-4440                   TCGA-CG-4441 
"AMP PEAK 15(11P13) WILD-TYPE" "AMP PEAK 15(11P13) WILD-TYPE" 
                  TCGA-CG-4443                   TCGA-CG-4444 
"AMP PEAK 15(11P13) WILD-TYPE" "AMP PEAK 15(11P13) WILD-TYPE" 
                  TCGA-CG-4449                   TCGA-CG-4455 
  "AMP PEAK 15(11P13) MUTATED" "AMP PEAK 15(11P13) WILD-TYPE" 
                  TCGA-CG-4460                   TCGA-CG-4462 
"AMP PEAK 15(11P13) WILD-TYPE" "AMP PEAK 15(11P13) WILD-TYPE" 
                  TCGA-CG-4465                   TCGA-CG-4466 
"AMP PEAK 15(11P13) WILD-TYPE" "AMP PEAK 15(11P13) WILD-TYPE" 
                  TCGA-CG-4469                   TCGA-CG-4472 
"AMP PEAK 15(11P13) WILD-TYPE"   "AMP PEAK 15(11P13) MUTATED" 
                  TCGA-CG-4474                   TCGA-CG-4477 
"AMP PEAK 15(11P13) WILD-TYPE" "AMP PEAK 15(11P13) WILD-TYPE" 
                  TCGA-CG-5716                   TCGA-CG-5717 
"AMP PEAK 15(11P13) WILD-TYPE"   "AMP PEAK 15(11P13) MUTATED" 
                  TCGA-CG-5718                   TCGA-CG-5719 
"AMP PEAK 15(11P13) WILD-TYPE" "AMP PEAK 15(11P13) WILD-TYPE" 
                  TCGA-CG-5720                   TCGA-CG-5721 
"AMP PEAK 15(11P13) WILD-TYPE" "AMP PEAK 15(11P13) WILD-TYPE" 
                  TCGA-CG-5722                   TCGA-CG-5723 
  "AMP PEAK 15(11P13) MUTATED" "AMP PEAK 15(11P13) WILD-TYPE" 
                  TCGA-CG-5724                   TCGA-CG-5725 
"AMP PEAK 15(11P13) WILD-TYPE" "AMP PEAK 15(11P13) WILD-TYPE" 
                  TCGA-CG-5726                   TCGA-CG-5727 
"AMP PEAK 15(11P13) WILD-TYPE" "AMP PEAK 15(11P13) WILD-TYPE" 
                  TCGA-CG-5728                   TCGA-CG-5730 
"AMP PEAK 15(11P13) WILD-TYPE" "AMP PEAK 15(11P13) WILD-TYPE" 
                  TCGA-CG-5732                   TCGA-CG-5733 
"AMP PEAK 15(11P13) WILD-TYPE" "AMP PEAK 15(11P13) WILD-TYPE" 
                  TCGA-CG-5734                   TCGA-D7-5577 
"AMP PEAK 15(11P13) WILD-TYPE" "AMP PEAK 15(11P13) WILD-TYPE" 
                  TCGA-D7-5578                   TCGA-D7-5579 
"AMP PEAK 15(11P13) WILD-TYPE" "AMP PEAK 15(11P13) WILD-TYPE" 
                  TCGA-D7-6518                   TCGA-D7-6519 
"AMP PEAK 15(11P13) WILD-TYPE" "AMP PEAK 15(11P13) WILD-TYPE" 
                  TCGA-D7-6520                   TCGA-D7-6521 
  "AMP PEAK 15(11P13) MUTATED" "AMP PEAK 15(11P13) WILD-TYPE" 
                  TCGA-D7-6522                   TCGA-D7-6524 
"AMP PEAK 15(11P13) WILD-TYPE" "AMP PEAK 15(11P13) WILD-TYPE" 
                  TCGA-D7-6525                   TCGA-D7-6526 
"AMP PEAK 15(11P13) WILD-TYPE" "AMP PEAK 15(11P13) WILD-TYPE" 
                  TCGA-D7-6527                   TCGA-D7-6528 
"AMP PEAK 15(11P13) WILD-TYPE" "AMP PEAK 15(11P13) WILD-TYPE" 
                  TCGA-D7-6815                   TCGA-D7-6817 
"AMP PEAK 15(11P13) WILD-TYPE" "AMP PEAK 15(11P13) WILD-TYPE" 
                  TCGA-D7-6818                   TCGA-D7-6820 
"AMP PEAK 15(11P13) WILD-TYPE" "AMP PEAK 15(11P13) WILD-TYPE" 
                  TCGA-D7-6822                   TCGA-EQ-5647 
  "AMP PEAK 15(11P13) MUTATED"   "AMP PEAK 15(11P13) MUTATED" 
                  TCGA-EQ-8122                   TCGA-F1-6177 
"AMP PEAK 15(11P13) WILD-TYPE" "AMP PEAK 15(11P13) WILD-TYPE" 
                  TCGA-F1-6874                   TCGA-F1-6875 
"AMP PEAK 15(11P13) WILD-TYPE" "AMP PEAK 15(11P13) WILD-TYPE" 
                  TCGA-FP-7735                   TCGA-FP-7829 
"AMP PEAK 15(11P13) WILD-TYPE" "AMP PEAK 15(11P13) WILD-TYPE" 
                  TCGA-FP-7916                   TCGA-FP-7998 
  "AMP PEAK 15(11P13) MUTATED" "AMP PEAK 15(11P13) WILD-TYPE" 
                  TCGA-HJ-7597                   TCGA-IN-7806 
"AMP PEAK 15(11P13) WILD-TYPE" "AMP PEAK 15(11P13) WILD-TYPE" 
                  TCGA-IN-7808                   TCGA-IP-7968 
  "AMP PEAK 15(11P13) MUTATED" "AMP PEAK 15(11P13) WILD-TYPE" 
                  TCGA-B7-5816                   TCGA-B7-5818 
"AMP PEAK 15(11P13) WILD-TYPE"   "AMP PEAK 15(11P13) MUTATED" 
                  TCGA-BR-6452                   TCGA-BR-6455 
"AMP PEAK 15(11P13) WILD-TYPE"   "AMP PEAK 15(11P13) MUTATED" 
                  TCGA-BR-6457                   TCGA-BR-6458 
"AMP PEAK 15(11P13) WILD-TYPE"   "AMP PEAK 15(11P13) MUTATED" 
                  TCGA-BR-6563                   TCGA-BR-6564 
"AMP PEAK 15(11P13) WILD-TYPE"   "AMP PEAK 15(11P13) MUTATED" 
                  TCGA-BR-6565                   TCGA-BR-6566 
"AMP PEAK 15(11P13) WILD-TYPE" "AMP PEAK 15(11P13) WILD-TYPE" 
                  TCGA-BR-6705                   TCGA-BR-6706 
"AMP PEAK 15(11P13) WILD-TYPE" "AMP PEAK 15(11P13) WILD-TYPE" 
                  TCGA-BR-6707                   TCGA-BR-6709 
"AMP PEAK 15(11P13) WILD-TYPE" "AMP PEAK 15(11P13) WILD-TYPE" 
                  TCGA-BR-6710                   TCGA-BR-6801 
"AMP PEAK 15(11P13) WILD-TYPE" "AMP PEAK 15(11P13) WILD-TYPE" 
                  TCGA-BR-6802                   TCGA-BR-6803 
"AMP PEAK 15(11P13) WILD-TYPE" "AMP PEAK 15(11P13) WILD-TYPE" 
                  TCGA-BR-6852                   TCGA-BR-7196 
"AMP PEAK 15(11P13) WILD-TYPE" "AMP PEAK 15(11P13) WILD-TYPE" 
                  TCGA-BR-7197                   TCGA-BR-7703 
"AMP PEAK 15(11P13) WILD-TYPE" "AMP PEAK 15(11P13) WILD-TYPE" 
                  TCGA-BR-7704                   TCGA-BR-7707 
"AMP PEAK 15(11P13) WILD-TYPE" "AMP PEAK 15(11P13) WILD-TYPE" 
                  TCGA-BR-7715                   TCGA-BR-7716 
"AMP PEAK 15(11P13) WILD-TYPE" "AMP PEAK 15(11P13) WILD-TYPE" 
                  TCGA-BR-7717                   TCGA-BR-7722 
  "AMP PEAK 15(11P13) MUTATED" "AMP PEAK 15(11P13) WILD-TYPE" 
                  TCGA-BR-7723                   TCGA-BR-7851 
"AMP PEAK 15(11P13) WILD-TYPE" "AMP PEAK 15(11P13) WILD-TYPE" 
                  TCGA-BR-7901                   TCGA-BR-7957 
  "AMP PEAK 15(11P13) MUTATED" "AMP PEAK 15(11P13) WILD-TYPE" 
                  TCGA-BR-7958                   TCGA-BR-7959 
"AMP PEAK 15(11P13) WILD-TYPE" "AMP PEAK 15(11P13) WILD-TYPE" 
                  TCGA-BR-8059                   TCGA-BR-8060 
"AMP PEAK 15(11P13) WILD-TYPE" "AMP PEAK 15(11P13) WILD-TYPE" 
                  TCGA-BR-8077                   TCGA-BR-8078 
"AMP PEAK 15(11P13) WILD-TYPE" "AMP PEAK 15(11P13) WILD-TYPE" 
                  TCGA-BR-8080                   TCGA-BR-8081 
"AMP PEAK 15(11P13) WILD-TYPE" "AMP PEAK 15(11P13) WILD-TYPE" 
                  TCGA-BR-8284                   TCGA-BR-8285 
"AMP PEAK 15(11P13) WILD-TYPE" "AMP PEAK 15(11P13) WILD-TYPE" 
                  TCGA-BR-8286                   TCGA-BR-8289 
"AMP PEAK 15(11P13) WILD-TYPE" "AMP PEAK 15(11P13) WILD-TYPE" 
                  TCGA-BR-8291                   TCGA-BR-8295 
"AMP PEAK 15(11P13) WILD-TYPE" "AMP PEAK 15(11P13) WILD-TYPE" 
                  TCGA-BR-8296                   TCGA-BR-8297 
"AMP PEAK 15(11P13) WILD-TYPE" "AMP PEAK 15(11P13) WILD-TYPE" 
                  TCGA-CD-5798                   TCGA-CD-5799 
"AMP PEAK 15(11P13) WILD-TYPE" "AMP PEAK 15(11P13) WILD-TYPE" 
                  TCGA-CD-5800                   TCGA-CD-5801 
"AMP PEAK 15(11P13) WILD-TYPE" "AMP PEAK 15(11P13) WILD-TYPE" 
                  TCGA-CD-5802                   TCGA-CD-5803 
"AMP PEAK 15(11P13) WILD-TYPE" "AMP PEAK 15(11P13) WILD-TYPE" 
                  TCGA-CG-4300                   TCGA-CG-4301 
  "AMP PEAK 15(11P13) MUTATED" "AMP PEAK 15(11P13) WILD-TYPE" 
                  TCGA-CG-4304                   TCGA-CG-4305 
"AMP PEAK 15(11P13) WILD-TYPE" "AMP PEAK 15(11P13) WILD-TYPE" 
                  TCGA-CG-4306                   TCGA-CG-4436 
"AMP PEAK 15(11P13) WILD-TYPE" "AMP PEAK 15(11P13) WILD-TYPE" 
                  TCGA-CG-4437                   TCGA-CG-4438 
"AMP PEAK 15(11P13) WILD-TYPE"   "AMP PEAK 15(11P13) MUTATED" 
                  TCGA-CG-4440                   TCGA-CG-4441 
"AMP PEAK 15(11P13) WILD-TYPE" "AMP PEAK 15(11P13) WILD-TYPE" 
                  TCGA-CG-4443                   TCGA-CG-4444 
"AMP PEAK 15(11P13) WILD-TYPE" "AMP PEAK 15(11P13) WILD-TYPE" 
                  TCGA-CG-4449                   TCGA-CG-4455 
  "AMP PEAK 15(11P13) MUTATED" "AMP PEAK 15(11P13) WILD-TYPE" 
                  TCGA-CG-4460                   TCGA-CG-4462 
"AMP PEAK 15(11P13) WILD-TYPE" "AMP PEAK 15(11P13) WILD-TYPE" 
                  TCGA-CG-4465                   TCGA-CG-4466 
"AMP PEAK 15(11P13) WILD-TYPE" "AMP PEAK 15(11P13) WILD-TYPE" 
                  TCGA-CG-4469                   TCGA-CG-4472 
"AMP PEAK 15(11P13) WILD-TYPE"   "AMP PEAK 15(11P13) MUTATED" 
                  TCGA-CG-4474                   TCGA-CG-4477 
"AMP PEAK 15(11P13) WILD-TYPE" "AMP PEAK 15(11P13) WILD-TYPE" 
                  TCGA-CG-5716                   TCGA-CG-5717 
"AMP PEAK 15(11P13) WILD-TYPE"   "AMP PEAK 15(11P13) MUTATED" 
                  TCGA-CG-5718                   TCGA-CG-5719 
"AMP PEAK 15(11P13) WILD-TYPE" "AMP PEAK 15(11P13) WILD-TYPE" 
                  TCGA-CG-5720                   TCGA-CG-5721 
"AMP PEAK 15(11P13) WILD-TYPE" "AMP PEAK 15(11P13) WILD-TYPE" 
                  TCGA-CG-5722                   TCGA-CG-5723 
  "AMP PEAK 15(11P13) MUTATED" "AMP PEAK 15(11P13) WILD-TYPE" 
                  TCGA-CG-5724                   TCGA-CG-5725 
"AMP PEAK 15(11P13) WILD-TYPE" "AMP PEAK 15(11P13) WILD-TYPE" 
                  TCGA-CG-5726                   TCGA-CG-5727 
"AMP PEAK 15(11P13) WILD-TYPE" "AMP PEAK 15(11P13) WILD-TYPE" 
                  TCGA-CG-5728                   TCGA-CG-5730 
"AMP PEAK 15(11P13) WILD-TYPE" "AMP PEAK 15(11P13) WILD-TYPE" 
                  TCGA-CG-5732                   TCGA-CG-5733 
"AMP PEAK 15(11P13) WILD-TYPE" "AMP PEAK 15(11P13) WILD-TYPE" 
                  TCGA-CG-5734                   TCGA-D7-5577 
"AMP PEAK 15(11P13) WILD-TYPE" "AMP PEAK 15(11P13) WILD-TYPE" 
                  TCGA-D7-5578                   TCGA-D7-5579 
"AMP PEAK 15(11P13) WILD-TYPE" "AMP PEAK 15(11P13) WILD-TYPE" 
                  TCGA-D7-6518                   TCGA-D7-6519 
"AMP PEAK 15(11P13) WILD-TYPE" "AMP PEAK 15(11P13) WILD-TYPE" 
                  TCGA-D7-6520                   TCGA-D7-6521 
  "AMP PEAK 15(11P13) MUTATED" "AMP PEAK 15(11P13) WILD-TYPE" 
                  TCGA-D7-6522                   TCGA-D7-6524 
"AMP PEAK 15(11P13) WILD-TYPE" "AMP PEAK 15(11P13) WILD-TYPE" 
                  TCGA-D7-6525                   TCGA-D7-6526 
"AMP PEAK 15(11P13) WILD-TYPE" "AMP PEAK 15(11P13) WILD-TYPE" 
                  TCGA-D7-6527                   TCGA-D7-6528 
"AMP PEAK 15(11P13) WILD-TYPE" "AMP PEAK 15(11P13) WILD-TYPE" 
                  TCGA-D7-6815                   TCGA-D7-6817 
"AMP PEAK 15(11P13) WILD-TYPE" "AMP PEAK 15(11P13) WILD-TYPE" 
                  TCGA-D7-6818                   TCGA-D7-6820 
"AMP PEAK 15(11P13) WILD-TYPE" "AMP PEAK 15(11P13) WILD-TYPE" 
                  TCGA-D7-6822                   TCGA-EQ-5647 
  "AMP PEAK 15(11P13) MUTATED"   "AMP PEAK 15(11P13) MUTATED" 
                  TCGA-EQ-8122                   TCGA-F1-6177 
"AMP PEAK 15(11P13) WILD-TYPE" "AMP PEAK 15(11P13) WILD-TYPE" 
                  TCGA-F1-6874                   TCGA-F1-6875 
"AMP PEAK 15(11P13) WILD-TYPE" "AMP PEAK 15(11P13) WILD-TYPE" 
                  TCGA-FP-7735                   TCGA-FP-7829 
"AMP PEAK 15(11P13) WILD-TYPE" "AMP PEAK 15(11P13) WILD-TYPE" 
                  TCGA-FP-7916                   TCGA-FP-7998 
  "AMP PEAK 15(11P13) MUTATED" "AMP PEAK 15(11P13) WILD-TYPE" 
                  TCGA-HJ-7597                   TCGA-IN-7806 
"AMP PEAK 15(11P13) WILD-TYPE" "AMP PEAK 15(11P13) WILD-TYPE" 
                  TCGA-IN-7808                   TCGA-IP-7968 
  "AMP PEAK 15(11P13) MUTATED" "AMP PEAK 15(11P13) WILD-TYPE" 
[1] "hr=" "1"  
D15V2, continuous
D15V3, binary
[1] "tbl2"
                              cls
clus                           [,1] [,2]
  AMP PEAK 15(11P13) MUTATED      8   17
  AMP PEAK 15(11P13) WILD-TYPE   57   79
        clus
vv       AMP PEAK 15(11P13) MUTATED AMP PEAK 15(11P13) WILD-TYPE
  FEMALE                          8                           57
  MALE                           17                           79
D15V4, multiclass
D15V5, multiclass
    clus
vv   AMP PEAK 15(11P13) MUTATED AMP PEAK 15(11P13) WILD-TYPE
  T1                          0                            6
  T2                          6                           47
  T3                         10                           49
  T4                          6                           27
D15V6, multiclass
    clus
vv   AMP PEAK 15(11P13) MUTATED AMP PEAK 15(11P13) WILD-TYPE
  N0                          2                           48
  N1                         11                           46
  N2                          5                           19
  N3                          4                           15
D15V7, multiclass
    clus
vv   AMP PEAK 15(11P13) MUTATED AMP PEAK 15(11P13) WILD-TYPE
  M0                         20                          112
  M1                          3                           15
  MX                          2                            9
D15V8, multiclass
     clus
vv    AMP PEAK 15(11P13) MUTATED AMP PEAK 15(11P13) WILD-TYPE
  I                            2                           23
  II                           4                           39
  III                          8                           40
  IV                           7                           22
D15V9, binary
[1] "tbl2"
                              cls
clus                           [,1] [,2]
  AMP PEAK 15(11P13) MUTATED     24    1
  AMP PEAK 15(11P13) WILD-TYPE  132    4
     clus
vv    AMP PEAK 15(11P13) MUTATED AMP PEAK 15(11P13) WILD-TYPE
  NO                           1                            4
  YES                         24                          132

Clustering(16) Variable = Amp Peak 16(11q13.3) mutation analysis
D16V1, survival
                    TCGA-B7-5816                     TCGA-B7-5818 
"AMP PEAK 16(11Q13.3) WILD-TYPE" "AMP PEAK 16(11Q13.3) WILD-TYPE" 
                    TCGA-BR-6452                     TCGA-BR-6455 
"AMP PEAK 16(11Q13.3) WILD-TYPE"   "AMP PEAK 16(11Q13.3) MUTATED" 
                    TCGA-BR-6457                     TCGA-BR-6458 
  "AMP PEAK 16(11Q13.3) MUTATED" "AMP PEAK 16(11Q13.3) WILD-TYPE" 
                    TCGA-BR-6563                     TCGA-BR-6564 
"AMP PEAK 16(11Q13.3) WILD-TYPE" "AMP PEAK 16(11Q13.3) WILD-TYPE" 
                    TCGA-BR-6565                     TCGA-BR-6566 
"AMP PEAK 16(11Q13.3) WILD-TYPE" "AMP PEAK 16(11Q13.3) WILD-TYPE" 
                    TCGA-BR-6705                     TCGA-BR-6706 
"AMP PEAK 16(11Q13.3) WILD-TYPE" "AMP PEAK 16(11Q13.3) WILD-TYPE" 
                    TCGA-BR-6707                     TCGA-BR-6709 
"AMP PEAK 16(11Q13.3) WILD-TYPE" "AMP PEAK 16(11Q13.3) WILD-TYPE" 
                    TCGA-BR-6710                     TCGA-BR-6801 
"AMP PEAK 16(11Q13.3) WILD-TYPE" "AMP PEAK 16(11Q13.3) WILD-TYPE" 
                    TCGA-BR-6802                     TCGA-BR-6803 
"AMP PEAK 16(11Q13.3) WILD-TYPE" "AMP PEAK 16(11Q13.3) WILD-TYPE" 
                    TCGA-BR-6852                     TCGA-BR-7196 
"AMP PEAK 16(11Q13.3) WILD-TYPE" "AMP PEAK 16(11Q13.3) WILD-TYPE" 
                    TCGA-BR-7197                     TCGA-BR-7703 
"AMP PEAK 16(11Q13.3) WILD-TYPE" "AMP PEAK 16(11Q13.3) WILD-TYPE" 
                    TCGA-BR-7704                     TCGA-BR-7707 
  "AMP PEAK 16(11Q13.3) MUTATED" "AMP PEAK 16(11Q13.3) WILD-TYPE" 
                    TCGA-BR-7715                     TCGA-BR-7716 
"AMP PEAK 16(11Q13.3) WILD-TYPE" "AMP PEAK 16(11Q13.3) WILD-TYPE" 
                    TCGA-BR-7717                     TCGA-BR-7722 
  "AMP PEAK 16(11Q13.3) MUTATED" "AMP PEAK 16(11Q13.3) WILD-TYPE" 
                    TCGA-BR-7723                     TCGA-BR-7851 
"AMP PEAK 16(11Q13.3) WILD-TYPE" "AMP PEAK 16(11Q13.3) WILD-TYPE" 
                    TCGA-BR-7901                     TCGA-BR-7957 
  "AMP PEAK 16(11Q13.3) MUTATED" "AMP PEAK 16(11Q13.3) WILD-TYPE" 
                    TCGA-BR-7958                     TCGA-BR-7959 
"AMP PEAK 16(11Q13.3) WILD-TYPE" "AMP PEAK 16(11Q13.3) WILD-TYPE" 
                    TCGA-BR-8059                     TCGA-BR-8060 
"AMP PEAK 16(11Q13.3) WILD-TYPE" "AMP PEAK 16(11Q13.3) WILD-TYPE" 
                    TCGA-BR-8077                     TCGA-BR-8078 
"AMP PEAK 16(11Q13.3) WILD-TYPE" "AMP PEAK 16(11Q13.3) WILD-TYPE" 
                    TCGA-BR-8080                     TCGA-BR-8081 
"AMP PEAK 16(11Q13.3) WILD-TYPE" "AMP PEAK 16(11Q13.3) WILD-TYPE" 
                    TCGA-BR-8284                     TCGA-BR-8285 
"AMP PEAK 16(11Q13.3) WILD-TYPE" "AMP PEAK 16(11Q13.3) WILD-TYPE" 
                    TCGA-BR-8286                     TCGA-BR-8289 
"AMP PEAK 16(11Q13.3) WILD-TYPE" "AMP PEAK 16(11Q13.3) WILD-TYPE" 
                    TCGA-BR-8291                     TCGA-BR-8295 
"AMP PEAK 16(11Q13.3) WILD-TYPE" "AMP PEAK 16(11Q13.3) WILD-TYPE" 
                    TCGA-BR-8296                     TCGA-BR-8297 
"AMP PEAK 16(11Q13.3) WILD-TYPE" "AMP PEAK 16(11Q13.3) WILD-TYPE" 
                    TCGA-CD-5798                     TCGA-CD-5799 
"AMP PEAK 16(11Q13.3) WILD-TYPE"   "AMP PEAK 16(11Q13.3) MUTATED" 
                    TCGA-CD-5800                     TCGA-CD-5801 
"AMP PEAK 16(11Q13.3) WILD-TYPE" "AMP PEAK 16(11Q13.3) WILD-TYPE" 
                    TCGA-CD-5802                     TCGA-CD-5803 
"AMP PEAK 16(11Q13.3) WILD-TYPE" "AMP PEAK 16(11Q13.3) WILD-TYPE" 
                    TCGA-CG-4300                     TCGA-CG-4301 
  "AMP PEAK 16(11Q13.3) MUTATED" "AMP PEAK 16(11Q13.3) WILD-TYPE" 
                    TCGA-CG-4304                     TCGA-CG-4305 
"AMP PEAK 16(11Q13.3) WILD-TYPE" "AMP PEAK 16(11Q13.3) WILD-TYPE" 
                    TCGA-CG-4306                     TCGA-CG-4436 
"AMP PEAK 16(11Q13.3) WILD-TYPE" "AMP PEAK 16(11Q13.3) WILD-TYPE" 
                    TCGA-CG-4437                     TCGA-CG-4438 
"AMP PEAK 16(11Q13.3) WILD-TYPE"   "AMP PEAK 16(11Q13.3) MUTATED" 
                    TCGA-CG-4440                     TCGA-CG-4441 
"AMP PEAK 16(11Q13.3) WILD-TYPE" "AMP PEAK 16(11Q13.3) WILD-TYPE" 
                    TCGA-CG-4443                     TCGA-CG-4444 
"AMP PEAK 16(11Q13.3) WILD-TYPE"   "AMP PEAK 16(11Q13.3) MUTATED" 
                    TCGA-CG-4449                     TCGA-CG-4455 
  "AMP PEAK 16(11Q13.3) MUTATED"   "AMP PEAK 16(11Q13.3) MUTATED" 
                    TCGA-CG-4460                     TCGA-CG-4462 
"AMP PEAK 16(11Q13.3) WILD-TYPE" "AMP PEAK 16(11Q13.3) WILD-TYPE" 
                    TCGA-CG-4465                     TCGA-CG-4466 
"AMP PEAK 16(11Q13.3) WILD-TYPE" "AMP PEAK 16(11Q13.3) WILD-TYPE" 
                    TCGA-CG-4469                     TCGA-CG-4472 
"AMP PEAK 16(11Q13.3) WILD-TYPE"   "AMP PEAK 16(11Q13.3) MUTATED" 
                    TCGA-CG-4474                     TCGA-CG-4477 
"AMP PEAK 16(11Q13.3) WILD-TYPE" "AMP PEAK 16(11Q13.3) WILD-TYPE" 
                    TCGA-CG-5716                     TCGA-CG-5717 
"AMP PEAK 16(11Q13.3) WILD-TYPE" "AMP PEAK 16(11Q13.3) WILD-TYPE" 
                    TCGA-CG-5718                     TCGA-CG-5719 
"AMP PEAK 16(11Q13.3) WILD-TYPE" "AMP PEAK 16(11Q13.3) WILD-TYPE" 
                    TCGA-CG-5720                     TCGA-CG-5721 
"AMP PEAK 16(11Q13.3) WILD-TYPE" "AMP PEAK 16(11Q13.3) WILD-TYPE" 
                    TCGA-CG-5722                     TCGA-CG-5723 
  "AMP PEAK 16(11Q13.3) MUTATED" "AMP PEAK 16(11Q13.3) WILD-TYPE" 
                    TCGA-CG-5724                     TCGA-CG-5725 
  "AMP PEAK 16(11Q13.3) MUTATED" "AMP PEAK 16(11Q13.3) WILD-TYPE" 
                    TCGA-CG-5726                     TCGA-CG-5727 
"AMP PEAK 16(11Q13.3) WILD-TYPE" "AMP PEAK 16(11Q13.3) WILD-TYPE" 
                    TCGA-CG-5728                     TCGA-CG-5730 
"AMP PEAK 16(11Q13.3) WILD-TYPE" "AMP PEAK 16(11Q13.3) WILD-TYPE" 
                    TCGA-CG-5732                     TCGA-CG-5733 
"AMP PEAK 16(11Q13.3) WILD-TYPE" "AMP PEAK 16(11Q13.3) WILD-TYPE" 
                    TCGA-CG-5734                     TCGA-D7-5577 
"AMP PEAK 16(11Q13.3) WILD-TYPE" "AMP PEAK 16(11Q13.3) WILD-TYPE" 
                    TCGA-D7-5578                     TCGA-D7-5579 
"AMP PEAK 16(11Q13.3) WILD-TYPE" "AMP PEAK 16(11Q13.3) WILD-TYPE" 
                    TCGA-D7-6518                     TCGA-D7-6519 
"AMP PEAK 16(11Q13.3) WILD-TYPE" "AMP PEAK 16(11Q13.3) WILD-TYPE" 
                    TCGA-D7-6520                     TCGA-D7-6521 
"AMP PEAK 16(11Q13.3) WILD-TYPE" "AMP PEAK 16(11Q13.3) WILD-TYPE" 
                    TCGA-D7-6522                     TCGA-D7-6524 
"AMP PEAK 16(11Q13.3) WILD-TYPE" "AMP PEAK 16(11Q13.3) WILD-TYPE" 
                    TCGA-D7-6525                     TCGA-D7-6526 
"AMP PEAK 16(11Q13.3) WILD-TYPE" "AMP PEAK 16(11Q13.3) WILD-TYPE" 
                    TCGA-D7-6527                     TCGA-D7-6528 
"AMP PEAK 16(11Q13.3) WILD-TYPE" "AMP PEAK 16(11Q13.3) WILD-TYPE" 
                    TCGA-D7-6815                     TCGA-D7-6817 
"AMP PEAK 16(11Q13.3) WILD-TYPE" "AMP PEAK 16(11Q13.3) WILD-TYPE" 
                    TCGA-D7-6818                     TCGA-D7-6820 
"AMP PEAK 16(11Q13.3) WILD-TYPE" "AMP PEAK 16(11Q13.3) WILD-TYPE" 
                    TCGA-D7-6822                     TCGA-EQ-5647 
"AMP PEAK 16(11Q13.3) WILD-TYPE" "AMP PEAK 16(11Q13.3) WILD-TYPE" 
                    TCGA-EQ-8122                     TCGA-F1-6177 
  "AMP PEAK 16(11Q13.3) MUTATED" "AMP PEAK 16(11Q13.3) WILD-TYPE" 
                    TCGA-F1-6874                     TCGA-F1-6875 
"AMP PEAK 16(11Q13.3) WILD-TYPE"   "AMP PEAK 16(11Q13.3) MUTATED" 
                    TCGA-FP-7735                     TCGA-FP-7829 
"AMP PEAK 16(11Q13.3) WILD-TYPE" "AMP PEAK 16(11Q13.3) WILD-TYPE" 
                    TCGA-FP-7916                     TCGA-FP-7998 
"AMP PEAK 16(11Q13.3) WILD-TYPE" "AMP PEAK 16(11Q13.3) WILD-TYPE" 
                    TCGA-HJ-7597                     TCGA-IN-7806 
"AMP PEAK 16(11Q13.3) WILD-TYPE" "AMP PEAK 16(11Q13.3) WILD-TYPE" 
                    TCGA-IN-7808                     TCGA-IP-7968 
"AMP PEAK 16(11Q13.3) WILD-TYPE" "AMP PEAK 16(11Q13.3) WILD-TYPE" 
                    TCGA-B7-5816                     TCGA-B7-5818 
"AMP PEAK 16(11Q13.3) WILD-TYPE" "AMP PEAK 16(11Q13.3) WILD-TYPE" 
                    TCGA-BR-6452                     TCGA-BR-6455 
"AMP PEAK 16(11Q13.3) WILD-TYPE"   "AMP PEAK 16(11Q13.3) MUTATED" 
                    TCGA-BR-6457                     TCGA-BR-6458 
  "AMP PEAK 16(11Q13.3) MUTATED" "AMP PEAK 16(11Q13.3) WILD-TYPE" 
                    TCGA-BR-6563                     TCGA-BR-6564 
"AMP PEAK 16(11Q13.3) WILD-TYPE" "AMP PEAK 16(11Q13.3) WILD-TYPE" 
                    TCGA-BR-6565                     TCGA-BR-6566 
"AMP PEAK 16(11Q13.3) WILD-TYPE" "AMP PEAK 16(11Q13.3) WILD-TYPE" 
                    TCGA-BR-6705                     TCGA-BR-6706 
"AMP PEAK 16(11Q13.3) WILD-TYPE" "AMP PEAK 16(11Q13.3) WILD-TYPE" 
                    TCGA-BR-6707                     TCGA-BR-6709 
"AMP PEAK 16(11Q13.3) WILD-TYPE" "AMP PEAK 16(11Q13.3) WILD-TYPE" 
                    TCGA-BR-6710                     TCGA-BR-6801 
"AMP PEAK 16(11Q13.3) WILD-TYPE" "AMP PEAK 16(11Q13.3) WILD-TYPE" 
                    TCGA-BR-6802                     TCGA-BR-6803 
"AMP PEAK 16(11Q13.3) WILD-TYPE" "AMP PEAK 16(11Q13.3) WILD-TYPE" 
                    TCGA-BR-6852                     TCGA-BR-7196 
"AMP PEAK 16(11Q13.3) WILD-TYPE" "AMP PEAK 16(11Q13.3) WILD-TYPE" 
                    TCGA-BR-7197                     TCGA-BR-7703 
"AMP PEAK 16(11Q13.3) WILD-TYPE" "AMP PEAK 16(11Q13.3) WILD-TYPE" 
                    TCGA-BR-7704                     TCGA-BR-7707 
  "AMP PEAK 16(11Q13.3) MUTATED" "AMP PEAK 16(11Q13.3) WILD-TYPE" 
                    TCGA-BR-7715                     TCGA-BR-7716 
"AMP PEAK 16(11Q13.3) WILD-TYPE" "AMP PEAK 16(11Q13.3) WILD-TYPE" 
                    TCGA-BR-7717                     TCGA-BR-7722 
  "AMP PEAK 16(11Q13.3) MUTATED" "AMP PEAK 16(11Q13.3) WILD-TYPE" 
                    TCGA-BR-7723                     TCGA-BR-7851 
"AMP PEAK 16(11Q13.3) WILD-TYPE" "AMP PEAK 16(11Q13.3) WILD-TYPE" 
                    TCGA-BR-7901                     TCGA-BR-7957 
  "AMP PEAK 16(11Q13.3) MUTATED" "AMP PEAK 16(11Q13.3) WILD-TYPE" 
                    TCGA-BR-7958                     TCGA-BR-7959 
"AMP PEAK 16(11Q13.3) WILD-TYPE" "AMP PEAK 16(11Q13.3) WILD-TYPE" 
                    TCGA-BR-8059                     TCGA-BR-8060 
"AMP PEAK 16(11Q13.3) WILD-TYPE" "AMP PEAK 16(11Q13.3) WILD-TYPE" 
                    TCGA-BR-8077                     TCGA-BR-8078 
"AMP PEAK 16(11Q13.3) WILD-TYPE" "AMP PEAK 16(11Q13.3) WILD-TYPE" 
                    TCGA-BR-8080                     TCGA-BR-8081 
"AMP PEAK 16(11Q13.3) WILD-TYPE" "AMP PEAK 16(11Q13.3) WILD-TYPE" 
                    TCGA-BR-8284                     TCGA-BR-8285 
"AMP PEAK 16(11Q13.3) WILD-TYPE" "AMP PEAK 16(11Q13.3) WILD-TYPE" 
                    TCGA-BR-8286                     TCGA-BR-8289 
"AMP PEAK 16(11Q13.3) WILD-TYPE" "AMP PEAK 16(11Q13.3) WILD-TYPE" 
                    TCGA-BR-8291                     TCGA-BR-8295 
"AMP PEAK 16(11Q13.3) WILD-TYPE" "AMP PEAK 16(11Q13.3) WILD-TYPE" 
                    TCGA-BR-8296                     TCGA-BR-8297 
"AMP PEAK 16(11Q13.3) WILD-TYPE" "AMP PEAK 16(11Q13.3) WILD-TYPE" 
                    TCGA-CD-5798                     TCGA-CD-5799 
"AMP PEAK 16(11Q13.3) WILD-TYPE"   "AMP PEAK 16(11Q13.3) MUTATED" 
                    TCGA-CD-5800                     TCGA-CD-5801 
"AMP PEAK 16(11Q13.3) WILD-TYPE" "AMP PEAK 16(11Q13.3) WILD-TYPE" 
                    TCGA-CD-5802                     TCGA-CD-5803 
"AMP PEAK 16(11Q13.3) WILD-TYPE" "AMP PEAK 16(11Q13.3) WILD-TYPE" 
                    TCGA-CG-4300                     TCGA-CG-4301 
  "AMP PEAK 16(11Q13.3) MUTATED" "AMP PEAK 16(11Q13.3) WILD-TYPE" 
                    TCGA-CG-4304                     TCGA-CG-4305 
"AMP PEAK 16(11Q13.3) WILD-TYPE" "AMP PEAK 16(11Q13.3) WILD-TYPE" 
                    TCGA-CG-4306                     TCGA-CG-4436 
"AMP PEAK 16(11Q13.3) WILD-TYPE" "AMP PEAK 16(11Q13.3) WILD-TYPE" 
                    TCGA-CG-4437                     TCGA-CG-4438 
"AMP PEAK 16(11Q13.3) WILD-TYPE"   "AMP PEAK 16(11Q13.3) MUTATED" 
                    TCGA-CG-4440                     TCGA-CG-4441 
"AMP PEAK 16(11Q13.3) WILD-TYPE" "AMP PEAK 16(11Q13.3) WILD-TYPE" 
                    TCGA-CG-4443                     TCGA-CG-4444 
"AMP PEAK 16(11Q13.3) WILD-TYPE"   "AMP PEAK 16(11Q13.3) MUTATED" 
                    TCGA-CG-4449                     TCGA-CG-4455 
  "AMP PEAK 16(11Q13.3) MUTATED"   "AMP PEAK 16(11Q13.3) MUTATED" 
                    TCGA-CG-4460                     TCGA-CG-4462 
"AMP PEAK 16(11Q13.3) WILD-TYPE" "AMP PEAK 16(11Q13.3) WILD-TYPE" 
                    TCGA-CG-4465                     TCGA-CG-4466 
"AMP PEAK 16(11Q13.3) WILD-TYPE" "AMP PEAK 16(11Q13.3) WILD-TYPE" 
                    TCGA-CG-4469                     TCGA-CG-4472 
"AMP PEAK 16(11Q13.3) WILD-TYPE"   "AMP PEAK 16(11Q13.3) MUTATED" 
                    TCGA-CG-4474                     TCGA-CG-4477 
"AMP PEAK 16(11Q13.3) WILD-TYPE" "AMP PEAK 16(11Q13.3) WILD-TYPE" 
                    TCGA-CG-5716                     TCGA-CG-5717 
"AMP PEAK 16(11Q13.3) WILD-TYPE" "AMP PEAK 16(11Q13.3) WILD-TYPE" 
                    TCGA-CG-5718                     TCGA-CG-5719 
"AMP PEAK 16(11Q13.3) WILD-TYPE" "AMP PEAK 16(11Q13.3) WILD-TYPE" 
                    TCGA-CG-5720                     TCGA-CG-5721 
"AMP PEAK 16(11Q13.3) WILD-TYPE" "AMP PEAK 16(11Q13.3) WILD-TYPE" 
                    TCGA-CG-5722                     TCGA-CG-5723 
  "AMP PEAK 16(11Q13.3) MUTATED" "AMP PEAK 16(11Q13.3) WILD-TYPE" 
                    TCGA-CG-5724                     TCGA-CG-5725 
  "AMP PEAK 16(11Q13.3) MUTATED" "AMP PEAK 16(11Q13.3) WILD-TYPE" 
                    TCGA-CG-5726                     TCGA-CG-5727 
"AMP PEAK 16(11Q13.3) WILD-TYPE" "AMP PEAK 16(11Q13.3) WILD-TYPE" 
                    TCGA-CG-5728                     TCGA-CG-5730 
"AMP PEAK 16(11Q13.3) WILD-TYPE" "AMP PEAK 16(11Q13.3) WILD-TYPE" 
                    TCGA-CG-5732                     TCGA-CG-5733 
"AMP PEAK 16(11Q13.3) WILD-TYPE" "AMP PEAK 16(11Q13.3) WILD-TYPE" 
                    TCGA-CG-5734                     TCGA-D7-5577 
"AMP PEAK 16(11Q13.3) WILD-TYPE" "AMP PEAK 16(11Q13.3) WILD-TYPE" 
                    TCGA-D7-5578                     TCGA-D7-5579 
"AMP PEAK 16(11Q13.3) WILD-TYPE" "AMP PEAK 16(11Q13.3) WILD-TYPE" 
                    TCGA-D7-6518                     TCGA-D7-6519 
"AMP PEAK 16(11Q13.3) WILD-TYPE" "AMP PEAK 16(11Q13.3) WILD-TYPE" 
                    TCGA-D7-6520                     TCGA-D7-6521 
"AMP PEAK 16(11Q13.3) WILD-TYPE" "AMP PEAK 16(11Q13.3) WILD-TYPE" 
                    TCGA-D7-6522                     TCGA-D7-6524 
"AMP PEAK 16(11Q13.3) WILD-TYPE" "AMP PEAK 16(11Q13.3) WILD-TYPE" 
                    TCGA-D7-6525                     TCGA-D7-6526 
"AMP PEAK 16(11Q13.3) WILD-TYPE" "AMP PEAK 16(11Q13.3) WILD-TYPE" 
                    TCGA-D7-6527                     TCGA-D7-6528 
"AMP PEAK 16(11Q13.3) WILD-TYPE" "AMP PEAK 16(11Q13.3) WILD-TYPE" 
                    TCGA-D7-6815                     TCGA-D7-6817 
"AMP PEAK 16(11Q13.3) WILD-TYPE" "AMP PEAK 16(11Q13.3) WILD-TYPE" 
                    TCGA-D7-6818                     TCGA-D7-6820 
"AMP PEAK 16(11Q13.3) WILD-TYPE" "AMP PEAK 16(11Q13.3) WILD-TYPE" 
                    TCGA-D7-6822                     TCGA-EQ-5647 
"AMP PEAK 16(11Q13.3) WILD-TYPE" "AMP PEAK 16(11Q13.3) WILD-TYPE" 
                    TCGA-EQ-8122                     TCGA-F1-6177 
  "AMP PEAK 16(11Q13.3) MUTATED" "AMP PEAK 16(11Q13.3) WILD-TYPE" 
                    TCGA-F1-6874                     TCGA-F1-6875 
"AMP PEAK 16(11Q13.3) WILD-TYPE"   "AMP PEAK 16(11Q13.3) MUTATED" 
                    TCGA-FP-7735                     TCGA-FP-7829 
"AMP PEAK 16(11Q13.3) WILD-TYPE" "AMP PEAK 16(11Q13.3) WILD-TYPE" 
                    TCGA-FP-7916                     TCGA-FP-7998 
"AMP PEAK 16(11Q13.3) WILD-TYPE" "AMP PEAK 16(11Q13.3) WILD-TYPE" 
                    TCGA-HJ-7597                     TCGA-IN-7806 
"AMP PEAK 16(11Q13.3) WILD-TYPE" "AMP PEAK 16(11Q13.3) WILD-TYPE" 
                    TCGA-IN-7808                     TCGA-IP-7968 
"AMP PEAK 16(11Q13.3) WILD-TYPE" "AMP PEAK 16(11Q13.3) WILD-TYPE" 
                    TCGA-B7-5816                     TCGA-B7-5818 
"AMP PEAK 16(11Q13.3) WILD-TYPE" "AMP PEAK 16(11Q13.3) WILD-TYPE" 
                    TCGA-BR-6452                     TCGA-BR-6455 
"AMP PEAK 16(11Q13.3) WILD-TYPE"   "AMP PEAK 16(11Q13.3) MUTATED" 
                    TCGA-BR-6457                     TCGA-BR-6458 
  "AMP PEAK 16(11Q13.3) MUTATED" "AMP PEAK 16(11Q13.3) WILD-TYPE" 
                    TCGA-BR-6563                     TCGA-BR-6564 
"AMP PEAK 16(11Q13.3) WILD-TYPE" "AMP PEAK 16(11Q13.3) WILD-TYPE" 
                    TCGA-BR-6565                     TCGA-BR-6566 
"AMP PEAK 16(11Q13.3) WILD-TYPE" "AMP PEAK 16(11Q13.3) WILD-TYPE" 
                    TCGA-BR-6705                     TCGA-BR-6706 
"AMP PEAK 16(11Q13.3) WILD-TYPE" "AMP PEAK 16(11Q13.3) WILD-TYPE" 
                    TCGA-BR-6707                     TCGA-BR-6709 
"AMP PEAK 16(11Q13.3) WILD-TYPE" "AMP PEAK 16(11Q13.3) WILD-TYPE" 
                    TCGA-BR-6710                     TCGA-BR-6801 
"AMP PEAK 16(11Q13.3) WILD-TYPE" "AMP PEAK 16(11Q13.3) WILD-TYPE" 
                    TCGA-BR-6802                     TCGA-BR-6803 
"AMP PEAK 16(11Q13.3) WILD-TYPE" "AMP PEAK 16(11Q13.3) WILD-TYPE" 
                    TCGA-BR-6852                     TCGA-BR-7196 
"AMP PEAK 16(11Q13.3) WILD-TYPE" "AMP PEAK 16(11Q13.3) WILD-TYPE" 
                    TCGA-BR-7197                     TCGA-BR-7703 
"AMP PEAK 16(11Q13.3) WILD-TYPE" "AMP PEAK 16(11Q13.3) WILD-TYPE" 
                    TCGA-BR-7704                     TCGA-BR-7707 
  "AMP PEAK 16(11Q13.3) MUTATED" "AMP PEAK 16(11Q13.3) WILD-TYPE" 
                    TCGA-BR-7715                     TCGA-BR-7716 
"AMP PEAK 16(11Q13.3) WILD-TYPE" "AMP PEAK 16(11Q13.3) WILD-TYPE" 
                    TCGA-BR-7717                     TCGA-BR-7722 
  "AMP PEAK 16(11Q13.3) MUTATED" "AMP PEAK 16(11Q13.3) WILD-TYPE" 
                    TCGA-BR-7723                     TCGA-BR-7851 
"AMP PEAK 16(11Q13.3) WILD-TYPE" "AMP PEAK 16(11Q13.3) WILD-TYPE" 
                    TCGA-BR-7901                     TCGA-BR-7957 
  "AMP PEAK 16(11Q13.3) MUTATED" "AMP PEAK 16(11Q13.3) WILD-TYPE" 
                    TCGA-BR-7958                     TCGA-BR-7959 
"AMP PEAK 16(11Q13.3) WILD-TYPE" "AMP PEAK 16(11Q13.3) WILD-TYPE" 
                    TCGA-BR-8059                     TCGA-BR-8060 
"AMP PEAK 16(11Q13.3) WILD-TYPE" "AMP PEAK 16(11Q13.3) WILD-TYPE" 
                    TCGA-BR-8077                     TCGA-BR-8078 
"AMP PEAK 16(11Q13.3) WILD-TYPE" "AMP PEAK 16(11Q13.3) WILD-TYPE" 
                    TCGA-BR-8080                     TCGA-BR-8081 
"AMP PEAK 16(11Q13.3) WILD-TYPE" "AMP PEAK 16(11Q13.3) WILD-TYPE" 
                    TCGA-BR-8284                     TCGA-BR-8285 
"AMP PEAK 16(11Q13.3) WILD-TYPE" "AMP PEAK 16(11Q13.3) WILD-TYPE" 
                    TCGA-BR-8286                     TCGA-BR-8289 
"AMP PEAK 16(11Q13.3) WILD-TYPE" "AMP PEAK 16(11Q13.3) WILD-TYPE" 
                    TCGA-BR-8291                     TCGA-BR-8295 
"AMP PEAK 16(11Q13.3) WILD-TYPE" "AMP PEAK 16(11Q13.3) WILD-TYPE" 
                    TCGA-BR-8296                     TCGA-BR-8297 
"AMP PEAK 16(11Q13.3) WILD-TYPE" "AMP PEAK 16(11Q13.3) WILD-TYPE" 
                    TCGA-CD-5798                     TCGA-CD-5799 
"AMP PEAK 16(11Q13.3) WILD-TYPE"   "AMP PEAK 16(11Q13.3) MUTATED" 
                    TCGA-CD-5800                     TCGA-CD-5801 
"AMP PEAK 16(11Q13.3) WILD-TYPE" "AMP PEAK 16(11Q13.3) WILD-TYPE" 
                    TCGA-CD-5802                     TCGA-CD-5803 
"AMP PEAK 16(11Q13.3) WILD-TYPE" "AMP PEAK 16(11Q13.3) WILD-TYPE" 
                    TCGA-CG-4300                     TCGA-CG-4301 
  "AMP PEAK 16(11Q13.3) MUTATED" "AMP PEAK 16(11Q13.3) WILD-TYPE" 
                    TCGA-CG-4304                     TCGA-CG-4305 
"AMP PEAK 16(11Q13.3) WILD-TYPE" "AMP PEAK 16(11Q13.3) WILD-TYPE" 
                    TCGA-CG-4306                     TCGA-CG-4436 
"AMP PEAK 16(11Q13.3) WILD-TYPE" "AMP PEAK 16(11Q13.3) WILD-TYPE" 
                    TCGA-CG-4437                     TCGA-CG-4438 
"AMP PEAK 16(11Q13.3) WILD-TYPE"   "AMP PEAK 16(11Q13.3) MUTATED" 
                    TCGA-CG-4440                     TCGA-CG-4441 
"AMP PEAK 16(11Q13.3) WILD-TYPE" "AMP PEAK 16(11Q13.3) WILD-TYPE" 
                    TCGA-CG-4443                     TCGA-CG-4444 
"AMP PEAK 16(11Q13.3) WILD-TYPE"   "AMP PEAK 16(11Q13.3) MUTATED" 
                    TCGA-CG-4449                     TCGA-CG-4455 
  "AMP PEAK 16(11Q13.3) MUTATED"   "AMP PEAK 16(11Q13.3) MUTATED" 
                    TCGA-CG-4460                     TCGA-CG-4462 
"AMP PEAK 16(11Q13.3) WILD-TYPE" "AMP PEAK 16(11Q13.3) WILD-TYPE" 
                    TCGA-CG-4465                     TCGA-CG-4466 
"AMP PEAK 16(11Q13.3) WILD-TYPE" "AMP PEAK 16(11Q13.3) WILD-TYPE" 
                    TCGA-CG-4469                     TCGA-CG-4472 
"AMP PEAK 16(11Q13.3) WILD-TYPE"   "AMP PEAK 16(11Q13.3) MUTATED" 
                    TCGA-CG-4474                     TCGA-CG-4477 
"AMP PEAK 16(11Q13.3) WILD-TYPE" "AMP PEAK 16(11Q13.3) WILD-TYPE" 
                    TCGA-CG-5716                     TCGA-CG-5717 
"AMP PEAK 16(11Q13.3) WILD-TYPE" "AMP PEAK 16(11Q13.3) WILD-TYPE" 
                    TCGA-CG-5718                     TCGA-CG-5719 
"AMP PEAK 16(11Q13.3) WILD-TYPE" "AMP PEAK 16(11Q13.3) WILD-TYPE" 
                    TCGA-CG-5720                     TCGA-CG-5721 
"AMP PEAK 16(11Q13.3) WILD-TYPE" "AMP PEAK 16(11Q13.3) WILD-TYPE" 
                    TCGA-CG-5722                     TCGA-CG-5723 
  "AMP PEAK 16(11Q13.3) MUTATED" "AMP PEAK 16(11Q13.3) WILD-TYPE" 
                    TCGA-CG-5724                     TCGA-CG-5725 
  "AMP PEAK 16(11Q13.3) MUTATED" "AMP PEAK 16(11Q13.3) WILD-TYPE" 
                    TCGA-CG-5726                     TCGA-CG-5727 
"AMP PEAK 16(11Q13.3) WILD-TYPE" "AMP PEAK 16(11Q13.3) WILD-TYPE" 
                    TCGA-CG-5728                     TCGA-CG-5730 
"AMP PEAK 16(11Q13.3) WILD-TYPE" "AMP PEAK 16(11Q13.3) WILD-TYPE" 
                    TCGA-CG-5732                     TCGA-CG-5733 
"AMP PEAK 16(11Q13.3) WILD-TYPE" "AMP PEAK 16(11Q13.3) WILD-TYPE" 
                    TCGA-CG-5734                     TCGA-D7-5577 
"AMP PEAK 16(11Q13.3) WILD-TYPE" "AMP PEAK 16(11Q13.3) WILD-TYPE" 
                    TCGA-D7-5578                     TCGA-D7-5579 
"AMP PEAK 16(11Q13.3) WILD-TYPE" "AMP PEAK 16(11Q13.3) WILD-TYPE" 
                    TCGA-D7-6518                     TCGA-D7-6519 
"AMP PEAK 16(11Q13.3) WILD-TYPE" "AMP PEAK 16(11Q13.3) WILD-TYPE" 
                    TCGA-D7-6520                     TCGA-D7-6521 
"AMP PEAK 16(11Q13.3) WILD-TYPE" "AMP PEAK 16(11Q13.3) WILD-TYPE" 
                    TCGA-D7-6522                     TCGA-D7-6524 
"AMP PEAK 16(11Q13.3) WILD-TYPE" "AMP PEAK 16(11Q13.3) WILD-TYPE" 
                    TCGA-D7-6525                     TCGA-D7-6526 
"AMP PEAK 16(11Q13.3) WILD-TYPE" "AMP PEAK 16(11Q13.3) WILD-TYPE" 
                    TCGA-D7-6527                     TCGA-D7-6528 
"AMP PEAK 16(11Q13.3) WILD-TYPE" "AMP PEAK 16(11Q13.3) WILD-TYPE" 
                    TCGA-D7-6815                     TCGA-D7-6817 
"AMP PEAK 16(11Q13.3) WILD-TYPE" "AMP PEAK 16(11Q13.3) WILD-TYPE" 
                    TCGA-D7-6818                     TCGA-D7-6820 
"AMP PEAK 16(11Q13.3) WILD-TYPE" "AMP PEAK 16(11Q13.3) WILD-TYPE" 
                    TCGA-D7-6822                     TCGA-EQ-5647 
"AMP PEAK 16(11Q13.3) WILD-TYPE" "AMP PEAK 16(11Q13.3) WILD-TYPE" 
                    TCGA-EQ-8122                     TCGA-F1-6177 
  "AMP PEAK 16(11Q13.3) MUTATED" "AMP PEAK 16(11Q13.3) WILD-TYPE" 
                    TCGA-F1-6874                     TCGA-F1-6875 
"AMP PEAK 16(11Q13.3) WILD-TYPE"   "AMP PEAK 16(11Q13.3) MUTATED" 
                    TCGA-FP-7735                     TCGA-FP-7829 
"AMP PEAK 16(11Q13.3) WILD-TYPE" "AMP PEAK 16(11Q13.3) WILD-TYPE" 
                    TCGA-FP-7916                     TCGA-FP-7998 
"AMP PEAK 16(11Q13.3) WILD-TYPE" "AMP PEAK 16(11Q13.3) WILD-TYPE" 
                    TCGA-HJ-7597                     TCGA-IN-7806 
"AMP PEAK 16(11Q13.3) WILD-TYPE" "AMP PEAK 16(11Q13.3) WILD-TYPE" 
                    TCGA-IN-7808                     TCGA-IP-7968 
"AMP PEAK 16(11Q13.3) WILD-TYPE" "AMP PEAK 16(11Q13.3) WILD-TYPE" 
[1] "hr=" "4.3"
D16V2, continuous
D16V3, binary
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  AMP PEAK 16(11Q13.3) MUTATED      7   21
  AMP PEAK 16(11Q13.3) WILD-TYPE   58   75
        clus
vv       AMP PEAK 16(11Q13.3) MUTATED AMP PEAK 16(11Q13.3) WILD-TYPE
  FEMALE                            7                             58
  MALE                             21                             75
D16V4, multiclass
D16V5, multiclass
    clus
vv   AMP PEAK 16(11Q13.3) MUTATED AMP PEAK 16(11Q13.3) WILD-TYPE
  T1                            1                              5
  T2                            6                             47
  T3                           12                             47
  T4                            5                             28
D16V6, multiclass
    clus
vv   AMP PEAK 16(11Q13.3) MUTATED AMP PEAK 16(11Q13.3) WILD-TYPE
  N0                            5                             45
  N1                           11                             46
  N2                            5                             19
  N3                            3                             16
D16V7, multiclass
    clus
vv   AMP PEAK 16(11Q13.3) MUTATED AMP PEAK 16(11Q13.3) WILD-TYPE
  M0                           24                            108
  M1                            2                             16
  MX                            2                              9
D16V8, multiclass
     clus
vv    AMP PEAK 16(11Q13.3) MUTATED AMP PEAK 16(11Q13.3) WILD-TYPE
  I                              2                             23
  II                             8                             35
  III                            6                             42
  IV                             7                             22
D16V9, binary
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  AMP PEAK 16(11Q13.3) MUTATED     27    1
  AMP PEAK 16(11Q13.3) WILD-TYPE  129    4
     clus
vv    AMP PEAK 16(11Q13.3) MUTATED AMP PEAK 16(11Q13.3) WILD-TYPE
  NO                             1                              4
  YES                           27                            129

Clustering(17) Variable = Amp Peak 17(12p12.1) mutation analysis
D17V1, survival
                    TCGA-B7-5816                     TCGA-B7-5818 
"AMP PEAK 17(12P12.1) WILD-TYPE" "AMP PEAK 17(12P12.1) WILD-TYPE" 
                    TCGA-BR-6452                     TCGA-BR-6455 
"AMP PEAK 17(12P12.1) WILD-TYPE" "AMP PEAK 17(12P12.1) WILD-TYPE" 
                    TCGA-BR-6457                     TCGA-BR-6458 
"AMP PEAK 17(12P12.1) WILD-TYPE" "AMP PEAK 17(12P12.1) WILD-TYPE" 
                    TCGA-BR-6563                     TCGA-BR-6564 
  "AMP PEAK 17(12P12.1) MUTATED" "AMP PEAK 17(12P12.1) WILD-TYPE" 
                    TCGA-BR-6565                     TCGA-BR-6566 
"AMP PEAK 17(12P12.1) WILD-TYPE"   "AMP PEAK 17(12P12.1) MUTATED" 
                    TCGA-BR-6705                     TCGA-BR-6706 
  "AMP PEAK 17(12P12.1) MUTATED" "AMP PEAK 17(12P12.1) WILD-TYPE" 
                    TCGA-BR-6707                     TCGA-BR-6709 
"AMP PEAK 17(12P12.1) WILD-TYPE"   "AMP PEAK 17(12P12.1) MUTATED" 
                    TCGA-BR-6710                     TCGA-BR-6801 
"AMP PEAK 17(12P12.1) WILD-TYPE"   "AMP PEAK 17(12P12.1) MUTATED" 
                    TCGA-BR-6802                     TCGA-BR-6803 
"AMP PEAK 17(12P12.1) WILD-TYPE" "AMP PEAK 17(12P12.1) WILD-TYPE" 
                    TCGA-BR-6852                     TCGA-BR-7196 
"AMP PEAK 17(12P12.1) WILD-TYPE" "AMP PEAK 17(12P12.1) WILD-TYPE" 
                    TCGA-BR-7197                     TCGA-BR-7703 
"AMP PEAK 17(12P12.1) WILD-TYPE" "AMP PEAK 17(12P12.1) WILD-TYPE" 
                    TCGA-BR-7704                     TCGA-BR-7707 
"AMP PEAK 17(12P12.1) WILD-TYPE" "AMP PEAK 17(12P12.1) WILD-TYPE" 
                    TCGA-BR-7715                     TCGA-BR-7716 
"AMP PEAK 17(12P12.1) WILD-TYPE" "AMP PEAK 17(12P12.1) WILD-TYPE" 
                    TCGA-BR-7717                     TCGA-BR-7722 
"AMP PEAK 17(12P12.1) WILD-TYPE" "AMP PEAK 17(12P12.1) WILD-TYPE" 
                    TCGA-BR-7723                     TCGA-BR-7851 
  "AMP PEAK 17(12P12.1) MUTATED" "AMP PEAK 17(12P12.1) WILD-TYPE" 
                    TCGA-BR-7901                     TCGA-BR-7957 
  "AMP PEAK 17(12P12.1) MUTATED" "AMP PEAK 17(12P12.1) WILD-TYPE" 
                    TCGA-BR-7958                     TCGA-BR-7959 
"AMP PEAK 17(12P12.1) WILD-TYPE" "AMP PEAK 17(12P12.1) WILD-TYPE" 
                    TCGA-BR-8059                     TCGA-BR-8060 
"AMP PEAK 17(12P12.1) WILD-TYPE" "AMP PEAK 17(12P12.1) WILD-TYPE" 
                    TCGA-BR-8077                     TCGA-BR-8078 
"AMP PEAK 17(12P12.1) WILD-TYPE" "AMP PEAK 17(12P12.1) WILD-TYPE" 
                    TCGA-BR-8080                     TCGA-BR-8081 
"AMP PEAK 17(12P12.1) WILD-TYPE" "AMP PEAK 17(12P12.1) WILD-TYPE" 
                    TCGA-BR-8284                     TCGA-BR-8285 
"AMP PEAK 17(12P12.1) WILD-TYPE" "AMP PEAK 17(12P12.1) WILD-TYPE" 
                    TCGA-BR-8286                     TCGA-BR-8289 
"AMP PEAK 17(12P12.1) WILD-TYPE" "AMP PEAK 17(12P12.1) WILD-TYPE" 
                    TCGA-BR-8291                     TCGA-BR-8295 
"AMP PEAK 17(12P12.1) WILD-TYPE" "AMP PEAK 17(12P12.1) WILD-TYPE" 
                    TCGA-BR-8296                     TCGA-BR-8297 
"AMP PEAK 17(12P12.1) WILD-TYPE" "AMP PEAK 17(12P12.1) WILD-TYPE" 
                    TCGA-CD-5798                     TCGA-CD-5799 
  "AMP PEAK 17(12P12.1) MUTATED"   "AMP PEAK 17(12P12.1) MUTATED" 
                    TCGA-CD-5800                     TCGA-CD-5801 
"AMP PEAK 17(12P12.1) WILD-TYPE" "AMP PEAK 17(12P12.1) WILD-TYPE" 
                    TCGA-CD-5802                     TCGA-CD-5803 
  "AMP PEAK 17(12P12.1) MUTATED" "AMP PEAK 17(12P12.1) WILD-TYPE" 
                    TCGA-CG-4300                     TCGA-CG-4301 
  "AMP PEAK 17(12P12.1) MUTATED" "AMP PEAK 17(12P12.1) WILD-TYPE" 
                    TCGA-CG-4304                     TCGA-CG-4305 
"AMP PEAK 17(12P12.1) WILD-TYPE" "AMP PEAK 17(12P12.1) WILD-TYPE" 
                    TCGA-CG-4306                     TCGA-CG-4436 
"AMP PEAK 17(12P12.1) WILD-TYPE" "AMP PEAK 17(12P12.1) WILD-TYPE" 
                    TCGA-CG-4437                     TCGA-CG-4438 
"AMP PEAK 17(12P12.1) WILD-TYPE" "AMP PEAK 17(12P12.1) WILD-TYPE" 
                    TCGA-CG-4440                     TCGA-CG-4441 
"AMP PEAK 17(12P12.1) WILD-TYPE" "AMP PEAK 17(12P12.1) WILD-TYPE" 
                    TCGA-CG-4443                     TCGA-CG-4444 
"AMP PEAK 17(12P12.1) WILD-TYPE"   "AMP PEAK 17(12P12.1) MUTATED" 
                    TCGA-CG-4449                     TCGA-CG-4455 
"AMP PEAK 17(12P12.1) WILD-TYPE" "AMP PEAK 17(12P12.1) WILD-TYPE" 
                    TCGA-CG-4460                     TCGA-CG-4462 
  "AMP PEAK 17(12P12.1) MUTATED" "AMP PEAK 17(12P12.1) WILD-TYPE" 
                    TCGA-CG-4465                     TCGA-CG-4466 
"AMP PEAK 17(12P12.1) WILD-TYPE" "AMP PEAK 17(12P12.1) WILD-TYPE" 
                    TCGA-CG-4469                     TCGA-CG-4472 
"AMP PEAK 17(12P12.1) WILD-TYPE"   "AMP PEAK 17(12P12.1) MUTATED" 
                    TCGA-CG-4474                     TCGA-CG-4477 
  "AMP PEAK 17(12P12.1) MUTATED" "AMP PEAK 17(12P12.1) WILD-TYPE" 
                    TCGA-CG-5716                     TCGA-CG-5717 
"AMP PEAK 17(12P12.1) WILD-TYPE" "AMP PEAK 17(12P12.1) WILD-TYPE" 
                    TCGA-CG-5718                     TCGA-CG-5719 
"AMP PEAK 17(12P12.1) WILD-TYPE" "AMP PEAK 17(12P12.1) WILD-TYPE" 
                    TCGA-CG-5720                     TCGA-CG-5721 
"AMP PEAK 17(12P12.1) WILD-TYPE" "AMP PEAK 17(12P12.1) WILD-TYPE" 
                    TCGA-CG-5722                     TCGA-CG-5723 
  "AMP PEAK 17(12P12.1) MUTATED" "AMP PEAK 17(12P12.1) WILD-TYPE" 
                    TCGA-CG-5724                     TCGA-CG-5725 
  "AMP PEAK 17(12P12.1) MUTATED" "AMP PEAK 17(12P12.1) WILD-TYPE" 
                    TCGA-CG-5726                     TCGA-CG-5727 
"AMP PEAK 17(12P12.1) WILD-TYPE"   "AMP PEAK 17(12P12.1) MUTATED" 
                    TCGA-CG-5728                     TCGA-CG-5730 
"AMP PEAK 17(12P12.1) WILD-TYPE" "AMP PEAK 17(12P12.1) WILD-TYPE" 
                    TCGA-CG-5732                     TCGA-CG-5733 
"AMP PEAK 17(12P12.1) WILD-TYPE" "AMP PEAK 17(12P12.1) WILD-TYPE" 
                    TCGA-CG-5734                     TCGA-D7-5577 
"AMP PEAK 17(12P12.1) WILD-TYPE" "AMP PEAK 17(12P12.1) WILD-TYPE" 
                    TCGA-D7-5578                     TCGA-D7-5579 
  "AMP PEAK 17(12P12.1) MUTATED" "AMP PEAK 17(12P12.1) WILD-TYPE" 
                    TCGA-D7-6518                     TCGA-D7-6519 
  "AMP PEAK 17(12P12.1) MUTATED"   "AMP PEAK 17(12P12.1) MUTATED" 
                    TCGA-D7-6520                     TCGA-D7-6521 
"AMP PEAK 17(12P12.1) WILD-TYPE"   "AMP PEAK 17(12P12.1) MUTATED" 
                    TCGA-D7-6522                     TCGA-D7-6524 
"AMP PEAK 17(12P12.1) WILD-TYPE" "AMP PEAK 17(12P12.1) WILD-TYPE" 
                    TCGA-D7-6525                     TCGA-D7-6526 
"AMP PEAK 17(12P12.1) WILD-TYPE"   "AMP PEAK 17(12P12.1) MUTATED" 
                    TCGA-D7-6527                     TCGA-D7-6528 
"AMP PEAK 17(12P12.1) WILD-TYPE" "AMP PEAK 17(12P12.1) WILD-TYPE" 
                    TCGA-D7-6815                     TCGA-D7-6817 
"AMP PEAK 17(12P12.1) WILD-TYPE"   "AMP PEAK 17(12P12.1) MUTATED" 
                    TCGA-D7-6818                     TCGA-D7-6820 
"AMP PEAK 17(12P12.1) WILD-TYPE"   "AMP PEAK 17(12P12.1) MUTATED" 
                    TCGA-D7-6822                     TCGA-EQ-5647 
"AMP PEAK 17(12P12.1) WILD-TYPE"   "AMP PEAK 17(12P12.1) MUTATED" 
                    TCGA-EQ-8122                     TCGA-F1-6177 
"AMP PEAK 17(12P12.1) WILD-TYPE" "AMP PEAK 17(12P12.1) WILD-TYPE" 
                    TCGA-F1-6874                     TCGA-F1-6875 
"AMP PEAK 17(12P12.1) WILD-TYPE" "AMP PEAK 17(12P12.1) WILD-TYPE" 
                    TCGA-FP-7735                     TCGA-FP-7829 
  "AMP PEAK 17(12P12.1) MUTATED"   "AMP PEAK 17(12P12.1) MUTATED" 
                    TCGA-FP-7916                     TCGA-FP-7998 
"AMP PEAK 17(12P12.1) WILD-TYPE"   "AMP PEAK 17(12P12.1) MUTATED" 
                    TCGA-HJ-7597                     TCGA-IN-7806 
"AMP PEAK 17(12P12.1) WILD-TYPE" "AMP PEAK 17(12P12.1) WILD-TYPE" 
                    TCGA-IN-7808                     TCGA-IP-7968 
  "AMP PEAK 17(12P12.1) MUTATED"   "AMP PEAK 17(12P12.1) MUTATED" 
                    TCGA-B7-5816                     TCGA-B7-5818 
"AMP PEAK 17(12P12.1) WILD-TYPE" "AMP PEAK 17(12P12.1) WILD-TYPE" 
                    TCGA-BR-6452                     TCGA-BR-6455 
"AMP PEAK 17(12P12.1) WILD-TYPE" "AMP PEAK 17(12P12.1) WILD-TYPE" 
                    TCGA-BR-6457                     TCGA-BR-6458 
"AMP PEAK 17(12P12.1) WILD-TYPE" "AMP PEAK 17(12P12.1) WILD-TYPE" 
                    TCGA-BR-6563                     TCGA-BR-6564 
  "AMP PEAK 17(12P12.1) MUTATED" "AMP PEAK 17(12P12.1) WILD-TYPE" 
                    TCGA-BR-6565                     TCGA-BR-6566 
"AMP PEAK 17(12P12.1) WILD-TYPE"   "AMP PEAK 17(12P12.1) MUTATED" 
                    TCGA-BR-6705                     TCGA-BR-6706 
  "AMP PEAK 17(12P12.1) MUTATED" "AMP PEAK 17(12P12.1) WILD-TYPE" 
                    TCGA-BR-6707                     TCGA-BR-6709 
"AMP PEAK 17(12P12.1) WILD-TYPE"   "AMP PEAK 17(12P12.1) MUTATED" 
                    TCGA-BR-6710                     TCGA-BR-6801 
"AMP PEAK 17(12P12.1) WILD-TYPE"   "AMP PEAK 17(12P12.1) MUTATED" 
                    TCGA-BR-6802                     TCGA-BR-6803 
"AMP PEAK 17(12P12.1) WILD-TYPE" "AMP PEAK 17(12P12.1) WILD-TYPE" 
                    TCGA-BR-6852                     TCGA-BR-7196 
"AMP PEAK 17(12P12.1) WILD-TYPE" "AMP PEAK 17(12P12.1) WILD-TYPE" 
                    TCGA-BR-7197                     TCGA-BR-7703 
"AMP PEAK 17(12P12.1) WILD-TYPE" "AMP PEAK 17(12P12.1) WILD-TYPE" 
                    TCGA-BR-7704                     TCGA-BR-7707 
"AMP PEAK 17(12P12.1) WILD-TYPE" "AMP PEAK 17(12P12.1) WILD-TYPE" 
                    TCGA-BR-7715                     TCGA-BR-7716 
"AMP PEAK 17(12P12.1) WILD-TYPE" "AMP PEAK 17(12P12.1) WILD-TYPE" 
                    TCGA-BR-7717                     TCGA-BR-7722 
"AMP PEAK 17(12P12.1) WILD-TYPE" "AMP PEAK 17(12P12.1) WILD-TYPE" 
                    TCGA-BR-7723                     TCGA-BR-7851 
  "AMP PEAK 17(12P12.1) MUTATED" "AMP PEAK 17(12P12.1) WILD-TYPE" 
                    TCGA-BR-7901                     TCGA-BR-7957 
  "AMP PEAK 17(12P12.1) MUTATED" "AMP PEAK 17(12P12.1) WILD-TYPE" 
                    TCGA-BR-7958                     TCGA-BR-7959 
"AMP PEAK 17(12P12.1) WILD-TYPE" "AMP PEAK 17(12P12.1) WILD-TYPE" 
                    TCGA-BR-8059                     TCGA-BR-8060 
"AMP PEAK 17(12P12.1) WILD-TYPE" "AMP PEAK 17(12P12.1) WILD-TYPE" 
                    TCGA-BR-8077                     TCGA-BR-8078 
"AMP PEAK 17(12P12.1) WILD-TYPE" "AMP PEAK 17(12P12.1) WILD-TYPE" 
                    TCGA-BR-8080                     TCGA-BR-8081 
"AMP PEAK 17(12P12.1) WILD-TYPE" "AMP PEAK 17(12P12.1) WILD-TYPE" 
                    TCGA-BR-8284                     TCGA-BR-8285 
"AMP PEAK 17(12P12.1) WILD-TYPE" "AMP PEAK 17(12P12.1) WILD-TYPE" 
                    TCGA-BR-8286                     TCGA-BR-8289 
"AMP PEAK 17(12P12.1) WILD-TYPE" "AMP PEAK 17(12P12.1) WILD-TYPE" 
                    TCGA-BR-8291                     TCGA-BR-8295 
"AMP PEAK 17(12P12.1) WILD-TYPE" "AMP PEAK 17(12P12.1) WILD-TYPE" 
                    TCGA-BR-8296                     TCGA-BR-8297 
"AMP PEAK 17(12P12.1) WILD-TYPE" "AMP PEAK 17(12P12.1) WILD-TYPE" 
                    TCGA-CD-5798                     TCGA-CD-5799 
  "AMP PEAK 17(12P12.1) MUTATED"   "AMP PEAK 17(12P12.1) MUTATED" 
                    TCGA-CD-5800                     TCGA-CD-5801 
"AMP PEAK 17(12P12.1) WILD-TYPE" "AMP PEAK 17(12P12.1) WILD-TYPE" 
                    TCGA-CD-5802                     TCGA-CD-5803 
  "AMP PEAK 17(12P12.1) MUTATED" "AMP PEAK 17(12P12.1) WILD-TYPE" 
                    TCGA-CG-4300                     TCGA-CG-4301 
  "AMP PEAK 17(12P12.1) MUTATED" "AMP PEAK 17(12P12.1) WILD-TYPE" 
                    TCGA-CG-4304                     TCGA-CG-4305 
"AMP PEAK 17(12P12.1) WILD-TYPE" "AMP PEAK 17(12P12.1) WILD-TYPE" 
                    TCGA-CG-4306                     TCGA-CG-4436 
"AMP PEAK 17(12P12.1) WILD-TYPE" "AMP PEAK 17(12P12.1) WILD-TYPE" 
                    TCGA-CG-4437                     TCGA-CG-4438 
"AMP PEAK 17(12P12.1) WILD-TYPE" "AMP PEAK 17(12P12.1) WILD-TYPE" 
                    TCGA-CG-4440                     TCGA-CG-4441 
"AMP PEAK 17(12P12.1) WILD-TYPE" "AMP PEAK 17(12P12.1) WILD-TYPE" 
                    TCGA-CG-4443                     TCGA-CG-4444 
"AMP PEAK 17(12P12.1) WILD-TYPE"   "AMP PEAK 17(12P12.1) MUTATED" 
                    TCGA-CG-4449                     TCGA-CG-4455 
"AMP PEAK 17(12P12.1) WILD-TYPE" "AMP PEAK 17(12P12.1) WILD-TYPE" 
                    TCGA-CG-4460                     TCGA-CG-4462 
  "AMP PEAK 17(12P12.1) MUTATED" "AMP PEAK 17(12P12.1) WILD-TYPE" 
                    TCGA-CG-4465                     TCGA-CG-4466 
"AMP PEAK 17(12P12.1) WILD-TYPE" "AMP PEAK 17(12P12.1) WILD-TYPE" 
                    TCGA-CG-4469                     TCGA-CG-4472 
"AMP PEAK 17(12P12.1) WILD-TYPE"   "AMP PEAK 17(12P12.1) MUTATED" 
                    TCGA-CG-4474                     TCGA-CG-4477 
  "AMP PEAK 17(12P12.1) MUTATED" "AMP PEAK 17(12P12.1) WILD-TYPE" 
                    TCGA-CG-5716                     TCGA-CG-5717 
"AMP PEAK 17(12P12.1) WILD-TYPE" "AMP PEAK 17(12P12.1) WILD-TYPE" 
                    TCGA-CG-5718                     TCGA-CG-5719 
"AMP PEAK 17(12P12.1) WILD-TYPE" "AMP PEAK 17(12P12.1) WILD-TYPE" 
                    TCGA-CG-5720                     TCGA-CG-5721 
"AMP PEAK 17(12P12.1) WILD-TYPE" "AMP PEAK 17(12P12.1) WILD-TYPE" 
                    TCGA-CG-5722                     TCGA-CG-5723 
  "AMP PEAK 17(12P12.1) MUTATED" "AMP PEAK 17(12P12.1) WILD-TYPE" 
                    TCGA-CG-5724                     TCGA-CG-5725 
  "AMP PEAK 17(12P12.1) MUTATED" "AMP PEAK 17(12P12.1) WILD-TYPE" 
                    TCGA-CG-5726                     TCGA-CG-5727 
"AMP PEAK 17(12P12.1) WILD-TYPE"   "AMP PEAK 17(12P12.1) MUTATED" 
                    TCGA-CG-5728                     TCGA-CG-5730 
"AMP PEAK 17(12P12.1) WILD-TYPE" "AMP PEAK 17(12P12.1) WILD-TYPE" 
                    TCGA-CG-5732                     TCGA-CG-5733 
"AMP PEAK 17(12P12.1) WILD-TYPE" "AMP PEAK 17(12P12.1) WILD-TYPE" 
                    TCGA-CG-5734                     TCGA-D7-5577 
"AMP PEAK 17(12P12.1) WILD-TYPE" "AMP PEAK 17(12P12.1) WILD-TYPE" 
                    TCGA-D7-5578                     TCGA-D7-5579 
  "AMP PEAK 17(12P12.1) MUTATED" "AMP PEAK 17(12P12.1) WILD-TYPE" 
                    TCGA-D7-6518                     TCGA-D7-6519 
  "AMP PEAK 17(12P12.1) MUTATED"   "AMP PEAK 17(12P12.1) MUTATED" 
                    TCGA-D7-6520                     TCGA-D7-6521 
"AMP PEAK 17(12P12.1) WILD-TYPE"   "AMP PEAK 17(12P12.1) MUTATED" 
                    TCGA-D7-6522                     TCGA-D7-6524 
"AMP PEAK 17(12P12.1) WILD-TYPE" "AMP PEAK 17(12P12.1) WILD-TYPE" 
                    TCGA-D7-6525                     TCGA-D7-6526 
"AMP PEAK 17(12P12.1) WILD-TYPE"   "AMP PEAK 17(12P12.1) MUTATED" 
                    TCGA-D7-6527                     TCGA-D7-6528 
"AMP PEAK 17(12P12.1) WILD-TYPE" "AMP PEAK 17(12P12.1) WILD-TYPE" 
                    TCGA-D7-6815                     TCGA-D7-6817 
"AMP PEAK 17(12P12.1) WILD-TYPE"   "AMP PEAK 17(12P12.1) MUTATED" 
                    TCGA-D7-6818                     TCGA-D7-6820 
"AMP PEAK 17(12P12.1) WILD-TYPE"   "AMP PEAK 17(12P12.1) MUTATED" 
                    TCGA-D7-6822                     TCGA-EQ-5647 
"AMP PEAK 17(12P12.1) WILD-TYPE"   "AMP PEAK 17(12P12.1) MUTATED" 
                    TCGA-EQ-8122                     TCGA-F1-6177 
"AMP PEAK 17(12P12.1) WILD-TYPE" "AMP PEAK 17(12P12.1) WILD-TYPE" 
                    TCGA-F1-6874                     TCGA-F1-6875 
"AMP PEAK 17(12P12.1) WILD-TYPE" "AMP PEAK 17(12P12.1) WILD-TYPE" 
                    TCGA-FP-7735                     TCGA-FP-7829 
  "AMP PEAK 17(12P12.1) MUTATED"   "AMP PEAK 17(12P12.1) MUTATED" 
                    TCGA-FP-7916                     TCGA-FP-7998 
"AMP PEAK 17(12P12.1) WILD-TYPE"   "AMP PEAK 17(12P12.1) MUTATED" 
                    TCGA-HJ-7597                     TCGA-IN-7806 
"AMP PEAK 17(12P12.1) WILD-TYPE" "AMP PEAK 17(12P12.1) WILD-TYPE" 
                    TCGA-IN-7808                     TCGA-IP-7968 
  "AMP PEAK 17(12P12.1) MUTATED"   "AMP PEAK 17(12P12.1) MUTATED" 
                    TCGA-B7-5816                     TCGA-B7-5818 
"AMP PEAK 17(12P12.1) WILD-TYPE" "AMP PEAK 17(12P12.1) WILD-TYPE" 
                    TCGA-BR-6452                     TCGA-BR-6455 
"AMP PEAK 17(12P12.1) WILD-TYPE" "AMP PEAK 17(12P12.1) WILD-TYPE" 
                    TCGA-BR-6457                     TCGA-BR-6458 
"AMP PEAK 17(12P12.1) WILD-TYPE" "AMP PEAK 17(12P12.1) WILD-TYPE" 
                    TCGA-BR-6563                     TCGA-BR-6564 
  "AMP PEAK 17(12P12.1) MUTATED" "AMP PEAK 17(12P12.1) WILD-TYPE" 
                    TCGA-BR-6565                     TCGA-BR-6566 
"AMP PEAK 17(12P12.1) WILD-TYPE"   "AMP PEAK 17(12P12.1) MUTATED" 
                    TCGA-BR-6705                     TCGA-BR-6706 
  "AMP PEAK 17(12P12.1) MUTATED" "AMP PEAK 17(12P12.1) WILD-TYPE" 
                    TCGA-BR-6707                     TCGA-BR-6709 
"AMP PEAK 17(12P12.1) WILD-TYPE"   "AMP PEAK 17(12P12.1) MUTATED" 
                    TCGA-BR-6710                     TCGA-BR-6801 
"AMP PEAK 17(12P12.1) WILD-TYPE"   "AMP PEAK 17(12P12.1) MUTATED" 
                    TCGA-BR-6802                     TCGA-BR-6803 
"AMP PEAK 17(12P12.1) WILD-TYPE" "AMP PEAK 17(12P12.1) WILD-TYPE" 
                    TCGA-BR-6852                     TCGA-BR-7196 
"AMP PEAK 17(12P12.1) WILD-TYPE" "AMP PEAK 17(12P12.1) WILD-TYPE" 
                    TCGA-BR-7197                     TCGA-BR-7703 
"AMP PEAK 17(12P12.1) WILD-TYPE" "AMP PEAK 17(12P12.1) WILD-TYPE" 
                    TCGA-BR-7704                     TCGA-BR-7707 
"AMP PEAK 17(12P12.1) WILD-TYPE" "AMP PEAK 17(12P12.1) WILD-TYPE" 
                    TCGA-BR-7715                     TCGA-BR-7716 
"AMP PEAK 17(12P12.1) WILD-TYPE" "AMP PEAK 17(12P12.1) WILD-TYPE" 
                    TCGA-BR-7717                     TCGA-BR-7722 
"AMP PEAK 17(12P12.1) WILD-TYPE" "AMP PEAK 17(12P12.1) WILD-TYPE" 
                    TCGA-BR-7723                     TCGA-BR-7851 
  "AMP PEAK 17(12P12.1) MUTATED" "AMP PEAK 17(12P12.1) WILD-TYPE" 
                    TCGA-BR-7901                     TCGA-BR-7957 
  "AMP PEAK 17(12P12.1) MUTATED" "AMP PEAK 17(12P12.1) WILD-TYPE" 
                    TCGA-BR-7958                     TCGA-BR-7959 
"AMP PEAK 17(12P12.1) WILD-TYPE" "AMP PEAK 17(12P12.1) WILD-TYPE" 
                    TCGA-BR-8059                     TCGA-BR-8060 
"AMP PEAK 17(12P12.1) WILD-TYPE" "AMP PEAK 17(12P12.1) WILD-TYPE" 
                    TCGA-BR-8077                     TCGA-BR-8078 
"AMP PEAK 17(12P12.1) WILD-TYPE" "AMP PEAK 17(12P12.1) WILD-TYPE" 
                    TCGA-BR-8080                     TCGA-BR-8081 
"AMP PEAK 17(12P12.1) WILD-TYPE" "AMP PEAK 17(12P12.1) WILD-TYPE" 
                    TCGA-BR-8284                     TCGA-BR-8285 
"AMP PEAK 17(12P12.1) WILD-TYPE" "AMP PEAK 17(12P12.1) WILD-TYPE" 
                    TCGA-BR-8286                     TCGA-BR-8289 
"AMP PEAK 17(12P12.1) WILD-TYPE" "AMP PEAK 17(12P12.1) WILD-TYPE" 
                    TCGA-BR-8291                     TCGA-BR-8295 
"AMP PEAK 17(12P12.1) WILD-TYPE" "AMP PEAK 17(12P12.1) WILD-TYPE" 
                    TCGA-BR-8296                     TCGA-BR-8297 
"AMP PEAK 17(12P12.1) WILD-TYPE" "AMP PEAK 17(12P12.1) WILD-TYPE" 
                    TCGA-CD-5798                     TCGA-CD-5799 
  "AMP PEAK 17(12P12.1) MUTATED"   "AMP PEAK 17(12P12.1) MUTATED" 
                    TCGA-CD-5800                     TCGA-CD-5801 
"AMP PEAK 17(12P12.1) WILD-TYPE" "AMP PEAK 17(12P12.1) WILD-TYPE" 
                    TCGA-CD-5802                     TCGA-CD-5803 
  "AMP PEAK 17(12P12.1) MUTATED" "AMP PEAK 17(12P12.1) WILD-TYPE" 
                    TCGA-CG-4300                     TCGA-CG-4301 
  "AMP PEAK 17(12P12.1) MUTATED" "AMP PEAK 17(12P12.1) WILD-TYPE" 
                    TCGA-CG-4304                     TCGA-CG-4305 
"AMP PEAK 17(12P12.1) WILD-TYPE" "AMP PEAK 17(12P12.1) WILD-TYPE" 
                    TCGA-CG-4306                     TCGA-CG-4436 
"AMP PEAK 17(12P12.1) WILD-TYPE" "AMP PEAK 17(12P12.1) WILD-TYPE" 
                    TCGA-CG-4437                     TCGA-CG-4438 
"AMP PEAK 17(12P12.1) WILD-TYPE" "AMP PEAK 17(12P12.1) WILD-TYPE" 
                    TCGA-CG-4440                     TCGA-CG-4441 
"AMP PEAK 17(12P12.1) WILD-TYPE" "AMP PEAK 17(12P12.1) WILD-TYPE" 
                    TCGA-CG-4443                     TCGA-CG-4444 
"AMP PEAK 17(12P12.1) WILD-TYPE"   "AMP PEAK 17(12P12.1) MUTATED" 
                    TCGA-CG-4449                     TCGA-CG-4455 
"AMP PEAK 17(12P12.1) WILD-TYPE" "AMP PEAK 17(12P12.1) WILD-TYPE" 
                    TCGA-CG-4460                     TCGA-CG-4462 
  "AMP PEAK 17(12P12.1) MUTATED" "AMP PEAK 17(12P12.1) WILD-TYPE" 
                    TCGA-CG-4465                     TCGA-CG-4466 
"AMP PEAK 17(12P12.1) WILD-TYPE" "AMP PEAK 17(12P12.1) WILD-TYPE" 
                    TCGA-CG-4469                     TCGA-CG-4472 
"AMP PEAK 17(12P12.1) WILD-TYPE"   "AMP PEAK 17(12P12.1) MUTATED" 
                    TCGA-CG-4474                     TCGA-CG-4477 
  "AMP PEAK 17(12P12.1) MUTATED" "AMP PEAK 17(12P12.1) WILD-TYPE" 
                    TCGA-CG-5716                     TCGA-CG-5717 
"AMP PEAK 17(12P12.1) WILD-TYPE" "AMP PEAK 17(12P12.1) WILD-TYPE" 
                    TCGA-CG-5718                     TCGA-CG-5719 
"AMP PEAK 17(12P12.1) WILD-TYPE" "AMP PEAK 17(12P12.1) WILD-TYPE" 
                    TCGA-CG-5720                     TCGA-CG-5721 
"AMP PEAK 17(12P12.1) WILD-TYPE" "AMP PEAK 17(12P12.1) WILD-TYPE" 
                    TCGA-CG-5722                     TCGA-CG-5723 
  "AMP PEAK 17(12P12.1) MUTATED" "AMP PEAK 17(12P12.1) WILD-TYPE" 
                    TCGA-CG-5724                     TCGA-CG-5725 
  "AMP PEAK 17(12P12.1) MUTATED" "AMP PEAK 17(12P12.1) WILD-TYPE" 
                    TCGA-CG-5726                     TCGA-CG-5727 
"AMP PEAK 17(12P12.1) WILD-TYPE"   "AMP PEAK 17(12P12.1) MUTATED" 
                    TCGA-CG-5728                     TCGA-CG-5730 
"AMP PEAK 17(12P12.1) WILD-TYPE" "AMP PEAK 17(12P12.1) WILD-TYPE" 
                    TCGA-CG-5732                     TCGA-CG-5733 
"AMP PEAK 17(12P12.1) WILD-TYPE" "AMP PEAK 17(12P12.1) WILD-TYPE" 
                    TCGA-CG-5734                     TCGA-D7-5577 
"AMP PEAK 17(12P12.1) WILD-TYPE" "AMP PEAK 17(12P12.1) WILD-TYPE" 
                    TCGA-D7-5578                     TCGA-D7-5579 
  "AMP PEAK 17(12P12.1) MUTATED" "AMP PEAK 17(12P12.1) WILD-TYPE" 
                    TCGA-D7-6518                     TCGA-D7-6519 
  "AMP PEAK 17(12P12.1) MUTATED"   "AMP PEAK 17(12P12.1) MUTATED" 
                    TCGA-D7-6520                     TCGA-D7-6521 
"AMP PEAK 17(12P12.1) WILD-TYPE"   "AMP PEAK 17(12P12.1) MUTATED" 
                    TCGA-D7-6522                     TCGA-D7-6524 
"AMP PEAK 17(12P12.1) WILD-TYPE" "AMP PEAK 17(12P12.1) WILD-TYPE" 
                    TCGA-D7-6525                     TCGA-D7-6526 
"AMP PEAK 17(12P12.1) WILD-TYPE"   "AMP PEAK 17(12P12.1) MUTATED" 
                    TCGA-D7-6527                     TCGA-D7-6528 
"AMP PEAK 17(12P12.1) WILD-TYPE" "AMP PEAK 17(12P12.1) WILD-TYPE" 
                    TCGA-D7-6815                     TCGA-D7-6817 
"AMP PEAK 17(12P12.1) WILD-TYPE"   "AMP PEAK 17(12P12.1) MUTATED" 
                    TCGA-D7-6818                     TCGA-D7-6820 
"AMP PEAK 17(12P12.1) WILD-TYPE"   "AMP PEAK 17(12P12.1) MUTATED" 
                    TCGA-D7-6822                     TCGA-EQ-5647 
"AMP PEAK 17(12P12.1) WILD-TYPE"   "AMP PEAK 17(12P12.1) MUTATED" 
                    TCGA-EQ-8122                     TCGA-F1-6177 
"AMP PEAK 17(12P12.1) WILD-TYPE" "AMP PEAK 17(12P12.1) WILD-TYPE" 
                    TCGA-F1-6874                     TCGA-F1-6875 
"AMP PEAK 17(12P12.1) WILD-TYPE" "AMP PEAK 17(12P12.1) WILD-TYPE" 
                    TCGA-FP-7735                     TCGA-FP-7829 
  "AMP PEAK 17(12P12.1) MUTATED"   "AMP PEAK 17(12P12.1) MUTATED" 
                    TCGA-FP-7916                     TCGA-FP-7998 
"AMP PEAK 17(12P12.1) WILD-TYPE"   "AMP PEAK 17(12P12.1) MUTATED" 
                    TCGA-HJ-7597                     TCGA-IN-7806 
"AMP PEAK 17(12P12.1) WILD-TYPE" "AMP PEAK 17(12P12.1) WILD-TYPE" 
                    TCGA-IN-7808                     TCGA-IP-7968 
  "AMP PEAK 17(12P12.1) MUTATED"   "AMP PEAK 17(12P12.1) MUTATED" 
[1] "hr=" "1.3"
D17V2, continuous
D17V3, binary
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  AMP PEAK 17(12P12.1) MUTATED     13   24
  AMP PEAK 17(12P12.1) WILD-TYPE   52   72
        clus
vv       AMP PEAK 17(12P12.1) MUTATED AMP PEAK 17(12P12.1) WILD-TYPE
  FEMALE                           13                             52
  MALE                             24                             72
D17V4, multiclass
D17V5, multiclass
    clus
vv   AMP PEAK 17(12P12.1) MUTATED AMP PEAK 17(12P12.1) WILD-TYPE
  T1                            0                              6
  T2                            8                             45
  T3                           21                             38
  T4                            7                             26
D17V6, multiclass
    clus
vv   AMP PEAK 17(12P12.1) MUTATED AMP PEAK 17(12P12.1) WILD-TYPE
  N0                            7                             43
  N1                           12                             45
  N2                           12                             12
  N3                            6                             13
D17V7, multiclass
    clus
vv   AMP PEAK 17(12P12.1) MUTATED AMP PEAK 17(12P12.1) WILD-TYPE
  M0                           28                            104
  M1                            6                             12
  MX                            3                              8
D17V8, multiclass
     clus
vv    AMP PEAK 17(12P12.1) MUTATED AMP PEAK 17(12P12.1) WILD-TYPE
  I                              1                             24
  II                             9                             34
  III                           18                             30
  IV                             8                             21
D17V9, binary
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  AMP PEAK 17(12P12.1) MUTATED     37    0
  AMP PEAK 17(12P12.1) WILD-TYPE  119    5
     clus
vv    AMP PEAK 17(12P12.1) MUTATED AMP PEAK 17(12P12.1) WILD-TYPE
  NO                             0                              5
  YES                           37                            119

Clustering(18) Variable = Amp Peak 18(12q15) mutation analysis
D18V1, survival
                  TCGA-B7-5816                   TCGA-B7-5818 
"AMP PEAK 18(12Q15) WILD-TYPE" "AMP PEAK 18(12Q15) WILD-TYPE" 
                  TCGA-BR-6452                   TCGA-BR-6455 
"AMP PEAK 18(12Q15) WILD-TYPE" "AMP PEAK 18(12Q15) WILD-TYPE" 
                  TCGA-BR-6457                   TCGA-BR-6458 
"AMP PEAK 18(12Q15) WILD-TYPE" "AMP PEAK 18(12Q15) WILD-TYPE" 
                  TCGA-BR-6563                   TCGA-BR-6564 
  "AMP PEAK 18(12Q15) MUTATED" "AMP PEAK 18(12Q15) WILD-TYPE" 
                  TCGA-BR-6565                   TCGA-BR-6566 
"AMP PEAK 18(12Q15) WILD-TYPE"   "AMP PEAK 18(12Q15) MUTATED" 
                  TCGA-BR-6705                   TCGA-BR-6706 
"AMP PEAK 18(12Q15) WILD-TYPE" "AMP PEAK 18(12Q15) WILD-TYPE" 
                  TCGA-BR-6707                   TCGA-BR-6709 
"AMP PEAK 18(12Q15) WILD-TYPE" "AMP PEAK 18(12Q15) WILD-TYPE" 
                  TCGA-BR-6710                   TCGA-BR-6801 
"AMP PEAK 18(12Q15) WILD-TYPE" "AMP PEAK 18(12Q15) WILD-TYPE" 
                  TCGA-BR-6802                   TCGA-BR-6803 
"AMP PEAK 18(12Q15) WILD-TYPE" "AMP PEAK 18(12Q15) WILD-TYPE" 
                  TCGA-BR-6852                   TCGA-BR-7196 
"AMP PEAK 18(12Q15) WILD-TYPE" "AMP PEAK 18(12Q15) WILD-TYPE" 
                  TCGA-BR-7197                   TCGA-BR-7703 
"AMP PEAK 18(12Q15) WILD-TYPE" "AMP PEAK 18(12Q15) WILD-TYPE" 
                  TCGA-BR-7704                   TCGA-BR-7707 
"AMP PEAK 18(12Q15) WILD-TYPE" "AMP PEAK 18(12Q15) WILD-TYPE" 
                  TCGA-BR-7715                   TCGA-BR-7716 
"AMP PEAK 18(12Q15) WILD-TYPE" "AMP PEAK 18(12Q15) WILD-TYPE" 
                  TCGA-BR-7717                   TCGA-BR-7722 
"AMP PEAK 18(12Q15) WILD-TYPE" "AMP PEAK 18(12Q15) WILD-TYPE" 
                  TCGA-BR-7723                   TCGA-BR-7851 
  "AMP PEAK 18(12Q15) MUTATED" "AMP PEAK 18(12Q15) WILD-TYPE" 
                  TCGA-BR-7901                   TCGA-BR-7957 
"AMP PEAK 18(12Q15) WILD-TYPE" "AMP PEAK 18(12Q15) WILD-TYPE" 
                  TCGA-BR-7958                   TCGA-BR-7959 
"AMP PEAK 18(12Q15) WILD-TYPE" "AMP PEAK 18(12Q15) WILD-TYPE" 
                  TCGA-BR-8059                   TCGA-BR-8060 
"AMP PEAK 18(12Q15) WILD-TYPE" "AMP PEAK 18(12Q15) WILD-TYPE" 
                  TCGA-BR-8077                   TCGA-BR-8078 
"AMP PEAK 18(12Q15) WILD-TYPE" "AMP PEAK 18(12Q15) WILD-TYPE" 
                  TCGA-BR-8080                   TCGA-BR-8081 
"AMP PEAK 18(12Q15) WILD-TYPE" "AMP PEAK 18(12Q15) WILD-TYPE" 
                  TCGA-BR-8284                   TCGA-BR-8285 
"AMP PEAK 18(12Q15) WILD-TYPE" "AMP PEAK 18(12Q15) WILD-TYPE" 
                  TCGA-BR-8286                   TCGA-BR-8289 
"AMP PEAK 18(12Q15) WILD-TYPE" "AMP PEAK 18(12Q15) WILD-TYPE" 
                  TCGA-BR-8291                   TCGA-BR-8295 
"AMP PEAK 18(12Q15) WILD-TYPE" "AMP PEAK 18(12Q15) WILD-TYPE" 
                  TCGA-BR-8296                   TCGA-BR-8297 
"AMP PEAK 18(12Q15) WILD-TYPE" "AMP PEAK 18(12Q15) WILD-TYPE" 
                  TCGA-CD-5798                   TCGA-CD-5799 
  "AMP PEAK 18(12Q15) MUTATED"   "AMP PEAK 18(12Q15) MUTATED" 
                  TCGA-CD-5800                   TCGA-CD-5801 
"AMP PEAK 18(12Q15) WILD-TYPE" "AMP PEAK 18(12Q15) WILD-TYPE" 
                  TCGA-CD-5802                   TCGA-CD-5803 
  "AMP PEAK 18(12Q15) MUTATED" "AMP PEAK 18(12Q15) WILD-TYPE" 
                  TCGA-CG-4300                   TCGA-CG-4301 
"AMP PEAK 18(12Q15) WILD-TYPE"   "AMP PEAK 18(12Q15) MUTATED" 
                  TCGA-CG-4304                   TCGA-CG-4305 
"AMP PEAK 18(12Q15) WILD-TYPE" "AMP PEAK 18(12Q15) WILD-TYPE" 
                  TCGA-CG-4306                   TCGA-CG-4436 
"AMP PEAK 18(12Q15) WILD-TYPE" "AMP PEAK 18(12Q15) WILD-TYPE" 
                  TCGA-CG-4437                   TCGA-CG-4438 
"AMP PEAK 18(12Q15) WILD-TYPE" "AMP PEAK 18(12Q15) WILD-TYPE" 
                  TCGA-CG-4440                   TCGA-CG-4441 
"AMP PEAK 18(12Q15) WILD-TYPE" "AMP PEAK 18(12Q15) WILD-TYPE" 
                  TCGA-CG-4443                   TCGA-CG-4444 
"AMP PEAK 18(12Q15) WILD-TYPE"   "AMP PEAK 18(12Q15) MUTATED" 
                  TCGA-CG-4449                   TCGA-CG-4455 
"AMP PEAK 18(12Q15) WILD-TYPE"   "AMP PEAK 18(12Q15) MUTATED" 
                  TCGA-CG-4460                   TCGA-CG-4462 
  "AMP PEAK 18(12Q15) MUTATED" "AMP PEAK 18(12Q15) WILD-TYPE" 
                  TCGA-CG-4465                   TCGA-CG-4466 
"AMP PEAK 18(12Q15) WILD-TYPE" "AMP PEAK 18(12Q15) WILD-TYPE" 
                  TCGA-CG-4469                   TCGA-CG-4472 
"AMP PEAK 18(12Q15) WILD-TYPE"   "AMP PEAK 18(12Q15) MUTATED" 
                  TCGA-CG-4474                   TCGA-CG-4477 
  "AMP PEAK 18(12Q15) MUTATED" "AMP PEAK 18(12Q15) WILD-TYPE" 
                  TCGA-CG-5716                   TCGA-CG-5717 
"AMP PEAK 18(12Q15) WILD-TYPE" "AMP PEAK 18(12Q15) WILD-TYPE" 
                  TCGA-CG-5718                   TCGA-CG-5719 
"AMP PEAK 18(12Q15) WILD-TYPE" "AMP PEAK 18(12Q15) WILD-TYPE" 
                  TCGA-CG-5720                   TCGA-CG-5721 
"AMP PEAK 18(12Q15) WILD-TYPE" "AMP PEAK 18(12Q15) WILD-TYPE" 
                  TCGA-CG-5722                   TCGA-CG-5723 
  "AMP PEAK 18(12Q15) MUTATED" "AMP PEAK 18(12Q15) WILD-TYPE" 
                  TCGA-CG-5724                   TCGA-CG-5725 
"AMP PEAK 18(12Q15) WILD-TYPE"   "AMP PEAK 18(12Q15) MUTATED" 
                  TCGA-CG-5726                   TCGA-CG-5727 
"AMP PEAK 18(12Q15) WILD-TYPE"   "AMP PEAK 18(12Q15) MUTATED" 
                  TCGA-CG-5728                   TCGA-CG-5730 
"AMP PEAK 18(12Q15) WILD-TYPE" "AMP PEAK 18(12Q15) WILD-TYPE" 
                  TCGA-CG-5732                   TCGA-CG-5733 
  "AMP PEAK 18(12Q15) MUTATED" "AMP PEAK 18(12Q15) WILD-TYPE" 
                  TCGA-CG-5734                   TCGA-D7-5577 
"AMP PEAK 18(12Q15) WILD-TYPE" "AMP PEAK 18(12Q15) WILD-TYPE" 
                  TCGA-D7-5578                   TCGA-D7-5579 
  "AMP PEAK 18(12Q15) MUTATED" "AMP PEAK 18(12Q15) WILD-TYPE" 
                  TCGA-D7-6518                   TCGA-D7-6519 
  "AMP PEAK 18(12Q15) MUTATED"   "AMP PEAK 18(12Q15) MUTATED" 
                  TCGA-D7-6520                   TCGA-D7-6521 
"AMP PEAK 18(12Q15) WILD-TYPE"   "AMP PEAK 18(12Q15) MUTATED" 
                  TCGA-D7-6522                   TCGA-D7-6524 
"AMP PEAK 18(12Q15) WILD-TYPE" "AMP PEAK 18(12Q15) WILD-TYPE" 
                  TCGA-D7-6525                   TCGA-D7-6526 
"AMP PEAK 18(12Q15) WILD-TYPE"   "AMP PEAK 18(12Q15) MUTATED" 
                  TCGA-D7-6527                   TCGA-D7-6528 
  "AMP PEAK 18(12Q15) MUTATED" "AMP PEAK 18(12Q15) WILD-TYPE" 
                  TCGA-D7-6815                   TCGA-D7-6817 
"AMP PEAK 18(12Q15) WILD-TYPE"   "AMP PEAK 18(12Q15) MUTATED" 
                  TCGA-D7-6818                   TCGA-D7-6820 
"AMP PEAK 18(12Q15) WILD-TYPE" "AMP PEAK 18(12Q15) WILD-TYPE" 
                  TCGA-D7-6822                   TCGA-EQ-5647 
"AMP PEAK 18(12Q15) WILD-TYPE"   "AMP PEAK 18(12Q15) MUTATED" 
                  TCGA-EQ-8122                   TCGA-F1-6177 
"AMP PEAK 18(12Q15) WILD-TYPE" "AMP PEAK 18(12Q15) WILD-TYPE" 
                  TCGA-F1-6874                   TCGA-F1-6875 
"AMP PEAK 18(12Q15) WILD-TYPE" "AMP PEAK 18(12Q15) WILD-TYPE" 
                  TCGA-FP-7735                   TCGA-FP-7829 
"AMP PEAK 18(12Q15) WILD-TYPE" "AMP PEAK 18(12Q15) WILD-TYPE" 
                  TCGA-FP-7916                   TCGA-FP-7998 
  "AMP PEAK 18(12Q15) MUTATED"   "AMP PEAK 18(12Q15) MUTATED" 
                  TCGA-HJ-7597                   TCGA-IN-7806 
"AMP PEAK 18(12Q15) WILD-TYPE" "AMP PEAK 18(12Q15) WILD-TYPE" 
                  TCGA-IN-7808                   TCGA-IP-7968 
  "AMP PEAK 18(12Q15) MUTATED" "AMP PEAK 18(12Q15) WILD-TYPE" 
                  TCGA-B7-5816                   TCGA-B7-5818 
"AMP PEAK 18(12Q15) WILD-TYPE" "AMP PEAK 18(12Q15) WILD-TYPE" 
                  TCGA-BR-6452                   TCGA-BR-6455 
"AMP PEAK 18(12Q15) WILD-TYPE" "AMP PEAK 18(12Q15) WILD-TYPE" 
                  TCGA-BR-6457                   TCGA-BR-6458 
"AMP PEAK 18(12Q15) WILD-TYPE" "AMP PEAK 18(12Q15) WILD-TYPE" 
                  TCGA-BR-6563                   TCGA-BR-6564 
  "AMP PEAK 18(12Q15) MUTATED" "AMP PEAK 18(12Q15) WILD-TYPE" 
                  TCGA-BR-6565                   TCGA-BR-6566 
"AMP PEAK 18(12Q15) WILD-TYPE"   "AMP PEAK 18(12Q15) MUTATED" 
                  TCGA-BR-6705                   TCGA-BR-6706 
"AMP PEAK 18(12Q15) WILD-TYPE" "AMP PEAK 18(12Q15) WILD-TYPE" 
                  TCGA-BR-6707                   TCGA-BR-6709 
"AMP PEAK 18(12Q15) WILD-TYPE" "AMP PEAK 18(12Q15) WILD-TYPE" 
                  TCGA-BR-6710                   TCGA-BR-6801 
"AMP PEAK 18(12Q15) WILD-TYPE" "AMP PEAK 18(12Q15) WILD-TYPE" 
                  TCGA-BR-6802                   TCGA-BR-6803 
"AMP PEAK 18(12Q15) WILD-TYPE" "AMP PEAK 18(12Q15) WILD-TYPE" 
                  TCGA-BR-6852                   TCGA-BR-7196 
"AMP PEAK 18(12Q15) WILD-TYPE" "AMP PEAK 18(12Q15) WILD-TYPE" 
                  TCGA-BR-7197                   TCGA-BR-7703 
"AMP PEAK 18(12Q15) WILD-TYPE" "AMP PEAK 18(12Q15) WILD-TYPE" 
                  TCGA-BR-7704                   TCGA-BR-7707 
"AMP PEAK 18(12Q15) WILD-TYPE" "AMP PEAK 18(12Q15) WILD-TYPE" 
                  TCGA-BR-7715                   TCGA-BR-7716 
"AMP PEAK 18(12Q15) WILD-TYPE" "AMP PEAK 18(12Q15) WILD-TYPE" 
                  TCGA-BR-7717                   TCGA-BR-7722 
"AMP PEAK 18(12Q15) WILD-TYPE" "AMP PEAK 18(12Q15) WILD-TYPE" 
                  TCGA-BR-7723                   TCGA-BR-7851 
  "AMP PEAK 18(12Q15) MUTATED" "AMP PEAK 18(12Q15) WILD-TYPE" 
                  TCGA-BR-7901                   TCGA-BR-7957 
"AMP PEAK 18(12Q15) WILD-TYPE" "AMP PEAK 18(12Q15) WILD-TYPE" 
                  TCGA-BR-7958                   TCGA-BR-7959 
"AMP PEAK 18(12Q15) WILD-TYPE" "AMP PEAK 18(12Q15) WILD-TYPE" 
                  TCGA-BR-8059                   TCGA-BR-8060 
"AMP PEAK 18(12Q15) WILD-TYPE" "AMP PEAK 18(12Q15) WILD-TYPE" 
                  TCGA-BR-8077                   TCGA-BR-8078 
"AMP PEAK 18(12Q15) WILD-TYPE" "AMP PEAK 18(12Q15) WILD-TYPE" 
                  TCGA-BR-8080                   TCGA-BR-8081 
"AMP PEAK 18(12Q15) WILD-TYPE" "AMP PEAK 18(12Q15) WILD-TYPE" 
                  TCGA-BR-8284                   TCGA-BR-8285 
"AMP PEAK 18(12Q15) WILD-TYPE" "AMP PEAK 18(12Q15) WILD-TYPE" 
                  TCGA-BR-8286                   TCGA-BR-8289 
"AMP PEAK 18(12Q15) WILD-TYPE" "AMP PEAK 18(12Q15) WILD-TYPE" 
                  TCGA-BR-8291                   TCGA-BR-8295 
"AMP PEAK 18(12Q15) WILD-TYPE" "AMP PEAK 18(12Q15) WILD-TYPE" 
                  TCGA-BR-8296                   TCGA-BR-8297 
"AMP PEAK 18(12Q15) WILD-TYPE" "AMP PEAK 18(12Q15) WILD-TYPE" 
                  TCGA-CD-5798                   TCGA-CD-5799 
  "AMP PEAK 18(12Q15) MUTATED"   "AMP PEAK 18(12Q15) MUTATED" 
                  TCGA-CD-5800                   TCGA-CD-5801 
"AMP PEAK 18(12Q15) WILD-TYPE" "AMP PEAK 18(12Q15) WILD-TYPE" 
                  TCGA-CD-5802                   TCGA-CD-5803 
  "AMP PEAK 18(12Q15) MUTATED" "AMP PEAK 18(12Q15) WILD-TYPE" 
                  TCGA-CG-4300                   TCGA-CG-4301 
"AMP PEAK 18(12Q15) WILD-TYPE"   "AMP PEAK 18(12Q15) MUTATED" 
                  TCGA-CG-4304                   TCGA-CG-4305 
"AMP PEAK 18(12Q15) WILD-TYPE" "AMP PEAK 18(12Q15) WILD-TYPE" 
                  TCGA-CG-4306                   TCGA-CG-4436 
"AMP PEAK 18(12Q15) WILD-TYPE" "AMP PEAK 18(12Q15) WILD-TYPE" 
                  TCGA-CG-4437                   TCGA-CG-4438 
"AMP PEAK 18(12Q15) WILD-TYPE" "AMP PEAK 18(12Q15) WILD-TYPE" 
                  TCGA-CG-4440                   TCGA-CG-4441 
"AMP PEAK 18(12Q15) WILD-TYPE" "AMP PEAK 18(12Q15) WILD-TYPE" 
                  TCGA-CG-4443                   TCGA-CG-4444 
"AMP PEAK 18(12Q15) WILD-TYPE"   "AMP PEAK 18(12Q15) MUTATED" 
                  TCGA-CG-4449                   TCGA-CG-4455 
"AMP PEAK 18(12Q15) WILD-TYPE"   "AMP PEAK 18(12Q15) MUTATED" 
                  TCGA-CG-4460                   TCGA-CG-4462 
  "AMP PEAK 18(12Q15) MUTATED" "AMP PEAK 18(12Q15) WILD-TYPE" 
                  TCGA-CG-4465                   TCGA-CG-4466 
"AMP PEAK 18(12Q15) WILD-TYPE" "AMP PEAK 18(12Q15) WILD-TYPE" 
                  TCGA-CG-4469                   TCGA-CG-4472 
"AMP PEAK 18(12Q15) WILD-TYPE"   "AMP PEAK 18(12Q15) MUTATED" 
                  TCGA-CG-4474                   TCGA-CG-4477 
  "AMP PEAK 18(12Q15) MUTATED" "AMP PEAK 18(12Q15) WILD-TYPE" 
                  TCGA-CG-5716                   TCGA-CG-5717 
"AMP PEAK 18(12Q15) WILD-TYPE" "AMP PEAK 18(12Q15) WILD-TYPE" 
                  TCGA-CG-5718                   TCGA-CG-5719 
"AMP PEAK 18(12Q15) WILD-TYPE" "AMP PEAK 18(12Q15) WILD-TYPE" 
                  TCGA-CG-5720                   TCGA-CG-5721 
"AMP PEAK 18(12Q15) WILD-TYPE" "AMP PEAK 18(12Q15) WILD-TYPE" 
                  TCGA-CG-5722                   TCGA-CG-5723 
  "AMP PEAK 18(12Q15) MUTATED" "AMP PEAK 18(12Q15) WILD-TYPE" 
                  TCGA-CG-5724                   TCGA-CG-5725 
"AMP PEAK 18(12Q15) WILD-TYPE"   "AMP PEAK 18(12Q15) MUTATED" 
                  TCGA-CG-5726                   TCGA-CG-5727 
"AMP PEAK 18(12Q15) WILD-TYPE"   "AMP PEAK 18(12Q15) MUTATED" 
                  TCGA-CG-5728                   TCGA-CG-5730 
"AMP PEAK 18(12Q15) WILD-TYPE" "AMP PEAK 18(12Q15) WILD-TYPE" 
                  TCGA-CG-5732                   TCGA-CG-5733 
  "AMP PEAK 18(12Q15) MUTATED" "AMP PEAK 18(12Q15) WILD-TYPE" 
                  TCGA-CG-5734                   TCGA-D7-5577 
"AMP PEAK 18(12Q15) WILD-TYPE" "AMP PEAK 18(12Q15) WILD-TYPE" 
                  TCGA-D7-5578                   TCGA-D7-5579 
  "AMP PEAK 18(12Q15) MUTATED" "AMP PEAK 18(12Q15) WILD-TYPE" 
                  TCGA-D7-6518                   TCGA-D7-6519 
  "AMP PEAK 18(12Q15) MUTATED"   "AMP PEAK 18(12Q15) MUTATED" 
                  TCGA-D7-6520                   TCGA-D7-6521 
"AMP PEAK 18(12Q15) WILD-TYPE"   "AMP PEAK 18(12Q15) MUTATED" 
                  TCGA-D7-6522                   TCGA-D7-6524 
"AMP PEAK 18(12Q15) WILD-TYPE" "AMP PEAK 18(12Q15) WILD-TYPE" 
                  TCGA-D7-6525                   TCGA-D7-6526 
"AMP PEAK 18(12Q15) WILD-TYPE"   "AMP PEAK 18(12Q15) MUTATED" 
                  TCGA-D7-6527                   TCGA-D7-6528 
  "AMP PEAK 18(12Q15) MUTATED" "AMP PEAK 18(12Q15) WILD-TYPE" 
                  TCGA-D7-6815                   TCGA-D7-6817 
"AMP PEAK 18(12Q15) WILD-TYPE"   "AMP PEAK 18(12Q15) MUTATED" 
                  TCGA-D7-6818                   TCGA-D7-6820 
"AMP PEAK 18(12Q15) WILD-TYPE" "AMP PEAK 18(12Q15) WILD-TYPE" 
                  TCGA-D7-6822                   TCGA-EQ-5647 
"AMP PEAK 18(12Q15) WILD-TYPE"   "AMP PEAK 18(12Q15) MUTATED" 
                  TCGA-EQ-8122                   TCGA-F1-6177 
"AMP PEAK 18(12Q15) WILD-TYPE" "AMP PEAK 18(12Q15) WILD-TYPE" 
                  TCGA-F1-6874                   TCGA-F1-6875 
"AMP PEAK 18(12Q15) WILD-TYPE" "AMP PEAK 18(12Q15) WILD-TYPE" 
                  TCGA-FP-7735                   TCGA-FP-7829 
"AMP PEAK 18(12Q15) WILD-TYPE" "AMP PEAK 18(12Q15) WILD-TYPE" 
                  TCGA-FP-7916                   TCGA-FP-7998 
  "AMP PEAK 18(12Q15) MUTATED"   "AMP PEAK 18(12Q15) MUTATED" 
                  TCGA-HJ-7597                   TCGA-IN-7806 
"AMP PEAK 18(12Q15) WILD-TYPE" "AMP PEAK 18(12Q15) WILD-TYPE" 
                  TCGA-IN-7808                   TCGA-IP-7968 
  "AMP PEAK 18(12Q15) MUTATED" "AMP PEAK 18(12Q15) WILD-TYPE" 
                  TCGA-B7-5816                   TCGA-B7-5818 
"AMP PEAK 18(12Q15) WILD-TYPE" "AMP PEAK 18(12Q15) WILD-TYPE" 
                  TCGA-BR-6452                   TCGA-BR-6455 
"AMP PEAK 18(12Q15) WILD-TYPE" "AMP PEAK 18(12Q15) WILD-TYPE" 
                  TCGA-BR-6457                   TCGA-BR-6458 
"AMP PEAK 18(12Q15) WILD-TYPE" "AMP PEAK 18(12Q15) WILD-TYPE" 
                  TCGA-BR-6563                   TCGA-BR-6564 
  "AMP PEAK 18(12Q15) MUTATED" "AMP PEAK 18(12Q15) WILD-TYPE" 
                  TCGA-BR-6565                   TCGA-BR-6566 
"AMP PEAK 18(12Q15) WILD-TYPE"   "AMP PEAK 18(12Q15) MUTATED" 
                  TCGA-BR-6705                   TCGA-BR-6706 
"AMP PEAK 18(12Q15) WILD-TYPE" "AMP PEAK 18(12Q15) WILD-TYPE" 
                  TCGA-BR-6707                   TCGA-BR-6709 
"AMP PEAK 18(12Q15) WILD-TYPE" "AMP PEAK 18(12Q15) WILD-TYPE" 
                  TCGA-BR-6710                   TCGA-BR-6801 
"AMP PEAK 18(12Q15) WILD-TYPE" "AMP PEAK 18(12Q15) WILD-TYPE" 
                  TCGA-BR-6802                   TCGA-BR-6803 
"AMP PEAK 18(12Q15) WILD-TYPE" "AMP PEAK 18(12Q15) WILD-TYPE" 
                  TCGA-BR-6852                   TCGA-BR-7196 
"AMP PEAK 18(12Q15) WILD-TYPE" "AMP PEAK 18(12Q15) WILD-TYPE" 
                  TCGA-BR-7197                   TCGA-BR-7703 
"AMP PEAK 18(12Q15) WILD-TYPE" "AMP PEAK 18(12Q15) WILD-TYPE" 
                  TCGA-BR-7704                   TCGA-BR-7707 
"AMP PEAK 18(12Q15) WILD-TYPE" "AMP PEAK 18(12Q15) WILD-TYPE" 
                  TCGA-BR-7715                   TCGA-BR-7716 
"AMP PEAK 18(12Q15) WILD-TYPE" "AMP PEAK 18(12Q15) WILD-TYPE" 
                  TCGA-BR-7717                   TCGA-BR-7722 
"AMP PEAK 18(12Q15) WILD-TYPE" "AMP PEAK 18(12Q15) WILD-TYPE" 
                  TCGA-BR-7723                   TCGA-BR-7851 
  "AMP PEAK 18(12Q15) MUTATED" "AMP PEAK 18(12Q15) WILD-TYPE" 
                  TCGA-BR-7901                   TCGA-BR-7957 
"AMP PEAK 18(12Q15) WILD-TYPE" "AMP PEAK 18(12Q15) WILD-TYPE" 
                  TCGA-BR-7958                   TCGA-BR-7959 
"AMP PEAK 18(12Q15) WILD-TYPE" "AMP PEAK 18(12Q15) WILD-TYPE" 
                  TCGA-BR-8059                   TCGA-BR-8060 
"AMP PEAK 18(12Q15) WILD-TYPE" "AMP PEAK 18(12Q15) WILD-TYPE" 
                  TCGA-BR-8077                   TCGA-BR-8078 
"AMP PEAK 18(12Q15) WILD-TYPE" "AMP PEAK 18(12Q15) WILD-TYPE" 
                  TCGA-BR-8080                   TCGA-BR-8081 
"AMP PEAK 18(12Q15) WILD-TYPE" "AMP PEAK 18(12Q15) WILD-TYPE" 
                  TCGA-BR-8284                   TCGA-BR-8285 
"AMP PEAK 18(12Q15) WILD-TYPE" "AMP PEAK 18(12Q15) WILD-TYPE" 
                  TCGA-BR-8286                   TCGA-BR-8289 
"AMP PEAK 18(12Q15) WILD-TYPE" "AMP PEAK 18(12Q15) WILD-TYPE" 
                  TCGA-BR-8291                   TCGA-BR-8295 
"AMP PEAK 18(12Q15) WILD-TYPE" "AMP PEAK 18(12Q15) WILD-TYPE" 
                  TCGA-BR-8296                   TCGA-BR-8297 
"AMP PEAK 18(12Q15) WILD-TYPE" "AMP PEAK 18(12Q15) WILD-TYPE" 
                  TCGA-CD-5798                   TCGA-CD-5799 
  "AMP PEAK 18(12Q15) MUTATED"   "AMP PEAK 18(12Q15) MUTATED" 
                  TCGA-CD-5800                   TCGA-CD-5801 
"AMP PEAK 18(12Q15) WILD-TYPE" "AMP PEAK 18(12Q15) WILD-TYPE" 
                  TCGA-CD-5802                   TCGA-CD-5803 
  "AMP PEAK 18(12Q15) MUTATED" "AMP PEAK 18(12Q15) WILD-TYPE" 
                  TCGA-CG-4300                   TCGA-CG-4301 
"AMP PEAK 18(12Q15) WILD-TYPE"   "AMP PEAK 18(12Q15) MUTATED" 
                  TCGA-CG-4304                   TCGA-CG-4305 
"AMP PEAK 18(12Q15) WILD-TYPE" "AMP PEAK 18(12Q15) WILD-TYPE" 
                  TCGA-CG-4306                   TCGA-CG-4436 
"AMP PEAK 18(12Q15) WILD-TYPE" "AMP PEAK 18(12Q15) WILD-TYPE" 
                  TCGA-CG-4437                   TCGA-CG-4438 
"AMP PEAK 18(12Q15) WILD-TYPE" "AMP PEAK 18(12Q15) WILD-TYPE" 
                  TCGA-CG-4440                   TCGA-CG-4441 
"AMP PEAK 18(12Q15) WILD-TYPE" "AMP PEAK 18(12Q15) WILD-TYPE" 
                  TCGA-CG-4443                   TCGA-CG-4444 
"AMP PEAK 18(12Q15) WILD-TYPE"   "AMP PEAK 18(12Q15) MUTATED" 
                  TCGA-CG-4449                   TCGA-CG-4455 
"AMP PEAK 18(12Q15) WILD-TYPE"   "AMP PEAK 18(12Q15) MUTATED" 
                  TCGA-CG-4460                   TCGA-CG-4462 
  "AMP PEAK 18(12Q15) MUTATED" "AMP PEAK 18(12Q15) WILD-TYPE" 
                  TCGA-CG-4465                   TCGA-CG-4466 
"AMP PEAK 18(12Q15) WILD-TYPE" "AMP PEAK 18(12Q15) WILD-TYPE" 
                  TCGA-CG-4469                   TCGA-CG-4472 
"AMP PEAK 18(12Q15) WILD-TYPE"   "AMP PEAK 18(12Q15) MUTATED" 
                  TCGA-CG-4474                   TCGA-CG-4477 
  "AMP PEAK 18(12Q15) MUTATED" "AMP PEAK 18(12Q15) WILD-TYPE" 
                  TCGA-CG-5716                   TCGA-CG-5717 
"AMP PEAK 18(12Q15) WILD-TYPE" "AMP PEAK 18(12Q15) WILD-TYPE" 
                  TCGA-CG-5718                   TCGA-CG-5719 
"AMP PEAK 18(12Q15) WILD-TYPE" "AMP PEAK 18(12Q15) WILD-TYPE" 
                  TCGA-CG-5720                   TCGA-CG-5721 
"AMP PEAK 18(12Q15) WILD-TYPE" "AMP PEAK 18(12Q15) WILD-TYPE" 
                  TCGA-CG-5722                   TCGA-CG-5723 
  "AMP PEAK 18(12Q15) MUTATED" "AMP PEAK 18(12Q15) WILD-TYPE" 
                  TCGA-CG-5724                   TCGA-CG-5725 
"AMP PEAK 18(12Q15) WILD-TYPE"   "AMP PEAK 18(12Q15) MUTATED" 
                  TCGA-CG-5726                   TCGA-CG-5727 
"AMP PEAK 18(12Q15) WILD-TYPE"   "AMP PEAK 18(12Q15) MUTATED" 
                  TCGA-CG-5728                   TCGA-CG-5730 
"AMP PEAK 18(12Q15) WILD-TYPE" "AMP PEAK 18(12Q15) WILD-TYPE" 
                  TCGA-CG-5732                   TCGA-CG-5733 
  "AMP PEAK 18(12Q15) MUTATED" "AMP PEAK 18(12Q15) WILD-TYPE" 
                  TCGA-CG-5734                   TCGA-D7-5577 
"AMP PEAK 18(12Q15) WILD-TYPE" "AMP PEAK 18(12Q15) WILD-TYPE" 
                  TCGA-D7-5578                   TCGA-D7-5579 
  "AMP PEAK 18(12Q15) MUTATED" "AMP PEAK 18(12Q15) WILD-TYPE" 
                  TCGA-D7-6518                   TCGA-D7-6519 
  "AMP PEAK 18(12Q15) MUTATED"   "AMP PEAK 18(12Q15) MUTATED" 
                  TCGA-D7-6520                   TCGA-D7-6521 
"AMP PEAK 18(12Q15) WILD-TYPE"   "AMP PEAK 18(12Q15) MUTATED" 
                  TCGA-D7-6522                   TCGA-D7-6524 
"AMP PEAK 18(12Q15) WILD-TYPE" "AMP PEAK 18(12Q15) WILD-TYPE" 
                  TCGA-D7-6525                   TCGA-D7-6526 
"AMP PEAK 18(12Q15) WILD-TYPE"   "AMP PEAK 18(12Q15) MUTATED" 
                  TCGA-D7-6527                   TCGA-D7-6528 
  "AMP PEAK 18(12Q15) MUTATED" "AMP PEAK 18(12Q15) WILD-TYPE" 
                  TCGA-D7-6815                   TCGA-D7-6817 
"AMP PEAK 18(12Q15) WILD-TYPE"   "AMP PEAK 18(12Q15) MUTATED" 
                  TCGA-D7-6818                   TCGA-D7-6820 
"AMP PEAK 18(12Q15) WILD-TYPE" "AMP PEAK 18(12Q15) WILD-TYPE" 
                  TCGA-D7-6822                   TCGA-EQ-5647 
"AMP PEAK 18(12Q15) WILD-TYPE"   "AMP PEAK 18(12Q15) MUTATED" 
                  TCGA-EQ-8122                   TCGA-F1-6177 
"AMP PEAK 18(12Q15) WILD-TYPE" "AMP PEAK 18(12Q15) WILD-TYPE" 
                  TCGA-F1-6874                   TCGA-F1-6875 
"AMP PEAK 18(12Q15) WILD-TYPE" "AMP PEAK 18(12Q15) WILD-TYPE" 
                  TCGA-FP-7735                   TCGA-FP-7829 
"AMP PEAK 18(12Q15) WILD-TYPE" "AMP PEAK 18(12Q15) WILD-TYPE" 
                  TCGA-FP-7916                   TCGA-FP-7998 
  "AMP PEAK 18(12Q15) MUTATED"   "AMP PEAK 18(12Q15) MUTATED" 
                  TCGA-HJ-7597                   TCGA-IN-7806 
"AMP PEAK 18(12Q15) WILD-TYPE" "AMP PEAK 18(12Q15) WILD-TYPE" 
                  TCGA-IN-7808                   TCGA-IP-7968 
  "AMP PEAK 18(12Q15) MUTATED" "AMP PEAK 18(12Q15) WILD-TYPE" 
[1] "hr=" "1.6"
D18V2, continuous
D18V3, binary
[1] "tbl2"
                              cls
clus                           [,1] [,2]
  AMP PEAK 18(12Q15) MUTATED     12   23
  AMP PEAK 18(12Q15) WILD-TYPE   53   73
        clus
vv       AMP PEAK 18(12Q15) MUTATED AMP PEAK 18(12Q15) WILD-TYPE
  FEMALE                         12                           53
  MALE                           23                           73
D18V4, multiclass
D18V5, multiclass
    clus
vv   AMP PEAK 18(12Q15) MUTATED AMP PEAK 18(12Q15) WILD-TYPE
  T1                          0                            6
  T2                         12                           41
  T3                         13                           46
  T4                          8                           25
D18V6, multiclass
    clus
vv   AMP PEAK 18(12Q15) MUTATED AMP PEAK 18(12Q15) WILD-TYPE
  N0                          8                           42
  N1                         11                           46
  N2                          8                           16
  N3                          7                           12
D18V7, multiclass
    clus
vv   AMP PEAK 18(12Q15) MUTATED AMP PEAK 18(12Q15) WILD-TYPE
  M0                         26                          106
  M1                          6                           12
  MX                          3                            8
D18V8, multiclass
     clus
vv    AMP PEAK 18(12Q15) MUTATED AMP PEAK 18(12Q15) WILD-TYPE
  I                            3                           22
  II                          11                           32
  III                         10                           38
  IV                           9                           20
D18V9, binary
[1] "tbl2"
                              cls
clus                           [,1] [,2]
  AMP PEAK 18(12Q15) MUTATED     33    2
  AMP PEAK 18(12Q15) WILD-TYPE  123    3
     clus
vv    AMP PEAK 18(12Q15) MUTATED AMP PEAK 18(12Q15) WILD-TYPE
  NO                           2                            3
  YES                         33                          123

Clustering(19) Variable = Amp Peak 19(13q12.3) mutation analysis
D19V1, survival
                    TCGA-B7-5816                     TCGA-B7-5818 
"AMP PEAK 19(13Q12.3) WILD-TYPE"   "AMP PEAK 19(13Q12.3) MUTATED" 
                    TCGA-BR-6452                     TCGA-BR-6455 
"AMP PEAK 19(13Q12.3) WILD-TYPE" "AMP PEAK 19(13Q12.3) WILD-TYPE" 
                    TCGA-BR-6457                     TCGA-BR-6458 
"AMP PEAK 19(13Q12.3) WILD-TYPE" "AMP PEAK 19(13Q12.3) WILD-TYPE" 
                    TCGA-BR-6563                     TCGA-BR-6564 
  "AMP PEAK 19(13Q12.3) MUTATED" "AMP PEAK 19(13Q12.3) WILD-TYPE" 
                    TCGA-BR-6565                     TCGA-BR-6566 
  "AMP PEAK 19(13Q12.3) MUTATED"   "AMP PEAK 19(13Q12.3) MUTATED" 
                    TCGA-BR-6705                     TCGA-BR-6706 
  "AMP PEAK 19(13Q12.3) MUTATED" "AMP PEAK 19(13Q12.3) WILD-TYPE" 
                    TCGA-BR-6707                     TCGA-BR-6709 
"AMP PEAK 19(13Q12.3) WILD-TYPE" "AMP PEAK 19(13Q12.3) WILD-TYPE" 
                    TCGA-BR-6710                     TCGA-BR-6801 
"AMP PEAK 19(13Q12.3) WILD-TYPE"   "AMP PEAK 19(13Q12.3) MUTATED" 
                    TCGA-BR-6802                     TCGA-BR-6803 
"AMP PEAK 19(13Q12.3) WILD-TYPE" "AMP PEAK 19(13Q12.3) WILD-TYPE" 
                    TCGA-BR-6852                     TCGA-BR-7196 
"AMP PEAK 19(13Q12.3) WILD-TYPE" "AMP PEAK 19(13Q12.3) WILD-TYPE" 
                    TCGA-BR-7197                     TCGA-BR-7703 
  "AMP PEAK 19(13Q12.3) MUTATED" "AMP PEAK 19(13Q12.3) WILD-TYPE" 
                    TCGA-BR-7704                     TCGA-BR-7707 
  "AMP PEAK 19(13Q12.3) MUTATED" "AMP PEAK 19(13Q12.3) WILD-TYPE" 
                    TCGA-BR-7715                     TCGA-BR-7716 
"AMP PEAK 19(13Q12.3) WILD-TYPE" "AMP PEAK 19(13Q12.3) WILD-TYPE" 
                    TCGA-BR-7717                     TCGA-BR-7722 
  "AMP PEAK 19(13Q12.3) MUTATED" "AMP PEAK 19(13Q12.3) WILD-TYPE" 
                    TCGA-BR-7723                     TCGA-BR-7851 
  "AMP PEAK 19(13Q12.3) MUTATED" "AMP PEAK 19(13Q12.3) WILD-TYPE" 
                    TCGA-BR-7901                     TCGA-BR-7957 
  "AMP PEAK 19(13Q12.3) MUTATED" "AMP PEAK 19(13Q12.3) WILD-TYPE" 
                    TCGA-BR-7958                     TCGA-BR-7959 
"AMP PEAK 19(13Q12.3) WILD-TYPE" "AMP PEAK 19(13Q12.3) WILD-TYPE" 
                    TCGA-BR-8059                     TCGA-BR-8060 
"AMP PEAK 19(13Q12.3) WILD-TYPE" "AMP PEAK 19(13Q12.3) WILD-TYPE" 
                    TCGA-BR-8077                     TCGA-BR-8078 
"AMP PEAK 19(13Q12.3) WILD-TYPE" "AMP PEAK 19(13Q12.3) WILD-TYPE" 
                    TCGA-BR-8080                     TCGA-BR-8081 
"AMP PEAK 19(13Q12.3) WILD-TYPE" "AMP PEAK 19(13Q12.3) WILD-TYPE" 
                    TCGA-BR-8284                     TCGA-BR-8285 
"AMP PEAK 19(13Q12.3) WILD-TYPE" "AMP PEAK 19(13Q12.3) WILD-TYPE" 
                    TCGA-BR-8286                     TCGA-BR-8289 
"AMP PEAK 19(13Q12.3) WILD-TYPE" "AMP PEAK 19(13Q12.3) WILD-TYPE" 
                    TCGA-BR-8291                     TCGA-BR-8295 
"AMP PEAK 19(13Q12.3) WILD-TYPE" "AMP PEAK 19(13Q12.3) WILD-TYPE" 
                    TCGA-BR-8296                     TCGA-BR-8297 
"AMP PEAK 19(13Q12.3) WILD-TYPE" "AMP PEAK 19(13Q12.3) WILD-TYPE" 
                    TCGA-CD-5798                     TCGA-CD-5799 
"AMP PEAK 19(13Q12.3) WILD-TYPE"   "AMP PEAK 19(13Q12.3) MUTATED" 
                    TCGA-CD-5800                     TCGA-CD-5801 
  "AMP PEAK 19(13Q12.3) MUTATED" "AMP PEAK 19(13Q12.3) WILD-TYPE" 
                    TCGA-CD-5802                     TCGA-CD-5803 
"AMP PEAK 19(13Q12.3) WILD-TYPE" "AMP PEAK 19(13Q12.3) WILD-TYPE" 
                    TCGA-CG-4300                     TCGA-CG-4301 
  "AMP PEAK 19(13Q12.3) MUTATED"   "AMP PEAK 19(13Q12.3) MUTATED" 
                    TCGA-CG-4304                     TCGA-CG-4305 
"AMP PEAK 19(13Q12.3) WILD-TYPE"   "AMP PEAK 19(13Q12.3) MUTATED" 
                    TCGA-CG-4306                     TCGA-CG-4436 
"AMP PEAK 19(13Q12.3) WILD-TYPE"   "AMP PEAK 19(13Q12.3) MUTATED" 
                    TCGA-CG-4437                     TCGA-CG-4438 
  "AMP PEAK 19(13Q12.3) MUTATED"   "AMP PEAK 19(13Q12.3) MUTATED" 
                    TCGA-CG-4440                     TCGA-CG-4441 
"AMP PEAK 19(13Q12.3) WILD-TYPE" "AMP PEAK 19(13Q12.3) WILD-TYPE" 
                    TCGA-CG-4443                     TCGA-CG-4444 
"AMP PEAK 19(13Q12.3) WILD-TYPE"   "AMP PEAK 19(13Q12.3) MUTATED" 
                    TCGA-CG-4449                     TCGA-CG-4455 
"AMP PEAK 19(13Q12.3) WILD-TYPE" "AMP PEAK 19(13Q12.3) WILD-TYPE" 
                    TCGA-CG-4460                     TCGA-CG-4462 
"AMP PEAK 19(13Q12.3) WILD-TYPE" "AMP PEAK 19(13Q12.3) WILD-TYPE" 
                    TCGA-CG-4465                     TCGA-CG-4466 
"AMP PEAK 19(13Q12.3) WILD-TYPE" "AMP PEAK 19(13Q12.3) WILD-TYPE" 
                    TCGA-CG-4469                     TCGA-CG-4472 
  "AMP PEAK 19(13Q12.3) MUTATED"   "AMP PEAK 19(13Q12.3) MUTATED" 
                    TCGA-CG-4474                     TCGA-CG-4477 
  "AMP PEAK 19(13Q12.3) MUTATED" "AMP PEAK 19(13Q12.3) WILD-TYPE" 
                    TCGA-CG-5716                     TCGA-CG-5717 
"AMP PEAK 19(13Q12.3) WILD-TYPE" "AMP PEAK 19(13Q12.3) WILD-TYPE" 
                    TCGA-CG-5718                     TCGA-CG-5719 
"AMP PEAK 19(13Q12.3) WILD-TYPE"   "AMP PEAK 19(13Q12.3) MUTATED" 
                    TCGA-CG-5720                     TCGA-CG-5721 
"AMP PEAK 19(13Q12.3) WILD-TYPE" "AMP PEAK 19(13Q12.3) WILD-TYPE" 
                    TCGA-CG-5722                     TCGA-CG-5723 
"AMP PEAK 19(13Q12.3) WILD-TYPE" "AMP PEAK 19(13Q12.3) WILD-TYPE" 
                    TCGA-CG-5724                     TCGA-CG-5725 
  "AMP PEAK 19(13Q12.3) MUTATED" "AMP PEAK 19(13Q12.3) WILD-TYPE" 
                    TCGA-CG-5726                     TCGA-CG-5727 
"AMP PEAK 19(13Q12.3) WILD-TYPE"   "AMP PEAK 19(13Q12.3) MUTATED" 
                    TCGA-CG-5728                     TCGA-CG-5730 
"AMP PEAK 19(13Q12.3) WILD-TYPE"   "AMP PEAK 19(13Q12.3) MUTATED" 
                    TCGA-CG-5732                     TCGA-CG-5733 
  "AMP PEAK 19(13Q12.3) MUTATED" "AMP PEAK 19(13Q12.3) WILD-TYPE" 
                    TCGA-CG-5734                     TCGA-D7-5577 
  "AMP PEAK 19(13Q12.3) MUTATED"   "AMP PEAK 19(13Q12.3) MUTATED" 
                    TCGA-D7-5578                     TCGA-D7-5579 
  "AMP PEAK 19(13Q12.3) MUTATED" "AMP PEAK 19(13Q12.3) WILD-TYPE" 
                    TCGA-D7-6518                     TCGA-D7-6519 
  "AMP PEAK 19(13Q12.3) MUTATED" "AMP PEAK 19(13Q12.3) WILD-TYPE" 
                    TCGA-D7-6520                     TCGA-D7-6521 
"AMP PEAK 19(13Q12.3) WILD-TYPE"   "AMP PEAK 19(13Q12.3) MUTATED" 
                    TCGA-D7-6522                     TCGA-D7-6524 
"AMP PEAK 19(13Q12.3) WILD-TYPE"   "AMP PEAK 19(13Q12.3) MUTATED" 
                    TCGA-D7-6525                     TCGA-D7-6526 
"AMP PEAK 19(13Q12.3) WILD-TYPE"   "AMP PEAK 19(13Q12.3) MUTATED" 
                    TCGA-D7-6527                     TCGA-D7-6528 
"AMP PEAK 19(13Q12.3) WILD-TYPE" "AMP PEAK 19(13Q12.3) WILD-TYPE" 
                    TCGA-D7-6815                     TCGA-D7-6817 
  "AMP PEAK 19(13Q12.3) MUTATED"   "AMP PEAK 19(13Q12.3) MUTATED" 
                    TCGA-D7-6818                     TCGA-D7-6820 
  "AMP PEAK 19(13Q12.3) MUTATED"   "AMP PEAK 19(13Q12.3) MUTATED" 
                    TCGA-D7-6822                     TCGA-EQ-5647 
"AMP PEAK 19(13Q12.3) WILD-TYPE"   "AMP PEAK 19(13Q12.3) MUTATED" 
                    TCGA-EQ-8122                     TCGA-F1-6177 
"AMP PEAK 19(13Q12.3) WILD-TYPE" "AMP PEAK 19(13Q12.3) WILD-TYPE" 
                    TCGA-F1-6874                     TCGA-F1-6875 
"AMP PEAK 19(13Q12.3) WILD-TYPE"   "AMP PEAK 19(13Q12.3) MUTATED" 
                    TCGA-FP-7735                     TCGA-FP-7829 
  "AMP PEAK 19(13Q12.3) MUTATED"   "AMP PEAK 19(13Q12.3) MUTATED" 
                    TCGA-FP-7916                     TCGA-FP-7998 
"AMP PEAK 19(13Q12.3) WILD-TYPE" "AMP PEAK 19(13Q12.3) WILD-TYPE" 
                    TCGA-HJ-7597                     TCGA-IN-7806 
"AMP PEAK 19(13Q12.3) WILD-TYPE" "AMP PEAK 19(13Q12.3) WILD-TYPE" 
                    TCGA-IN-7808                     TCGA-IP-7968 
  "AMP PEAK 19(13Q12.3) MUTATED" "AMP PEAK 19(13Q12.3) WILD-TYPE" 
                    TCGA-B7-5816                     TCGA-B7-5818 
"AMP PEAK 19(13Q12.3) WILD-TYPE"   "AMP PEAK 19(13Q12.3) MUTATED" 
                    TCGA-BR-6452                     TCGA-BR-6455 
"AMP PEAK 19(13Q12.3) WILD-TYPE" "AMP PEAK 19(13Q12.3) WILD-TYPE" 
                    TCGA-BR-6457                     TCGA-BR-6458 
"AMP PEAK 19(13Q12.3) WILD-TYPE" "AMP PEAK 19(13Q12.3) WILD-TYPE" 
                    TCGA-BR-6563                     TCGA-BR-6564 
  "AMP PEAK 19(13Q12.3) MUTATED" "AMP PEAK 19(13Q12.3) WILD-TYPE" 
                    TCGA-BR-6565                     TCGA-BR-6566 
  "AMP PEAK 19(13Q12.3) MUTATED"   "AMP PEAK 19(13Q12.3) MUTATED" 
                    TCGA-BR-6705                     TCGA-BR-6706 
  "AMP PEAK 19(13Q12.3) MUTATED" "AMP PEAK 19(13Q12.3) WILD-TYPE" 
                    TCGA-BR-6707                     TCGA-BR-6709 
"AMP PEAK 19(13Q12.3) WILD-TYPE" "AMP PEAK 19(13Q12.3) WILD-TYPE" 
                    TCGA-BR-6710                     TCGA-BR-6801 
"AMP PEAK 19(13Q12.3) WILD-TYPE"   "AMP PEAK 19(13Q12.3) MUTATED" 
                    TCGA-BR-6802                     TCGA-BR-6803 
"AMP PEAK 19(13Q12.3) WILD-TYPE" "AMP PEAK 19(13Q12.3) WILD-TYPE" 
                    TCGA-BR-6852                     TCGA-BR-7196 
"AMP PEAK 19(13Q12.3) WILD-TYPE" "AMP PEAK 19(13Q12.3) WILD-TYPE" 
                    TCGA-BR-7197                     TCGA-BR-7703 
  "AMP PEAK 19(13Q12.3) MUTATED" "AMP PEAK 19(13Q12.3) WILD-TYPE" 
                    TCGA-BR-7704                     TCGA-BR-7707 
  "AMP PEAK 19(13Q12.3) MUTATED" "AMP PEAK 19(13Q12.3) WILD-TYPE" 
                    TCGA-BR-7715                     TCGA-BR-7716 
"AMP PEAK 19(13Q12.3) WILD-TYPE" "AMP PEAK 19(13Q12.3) WILD-TYPE" 
                    TCGA-BR-7717                     TCGA-BR-7722 
  "AMP PEAK 19(13Q12.3) MUTATED" "AMP PEAK 19(13Q12.3) WILD-TYPE" 
                    TCGA-BR-7723                     TCGA-BR-7851 
  "AMP PEAK 19(13Q12.3) MUTATED" "AMP PEAK 19(13Q12.3) WILD-TYPE" 
                    TCGA-BR-7901                     TCGA-BR-7957 
  "AMP PEAK 19(13Q12.3) MUTATED" "AMP PEAK 19(13Q12.3) WILD-TYPE" 
                    TCGA-BR-7958                     TCGA-BR-7959 
"AMP PEAK 19(13Q12.3) WILD-TYPE" "AMP PEAK 19(13Q12.3) WILD-TYPE" 
                    TCGA-BR-8059                     TCGA-BR-8060 
"AMP PEAK 19(13Q12.3) WILD-TYPE" "AMP PEAK 19(13Q12.3) WILD-TYPE" 
                    TCGA-BR-8077                     TCGA-BR-8078 
"AMP PEAK 19(13Q12.3) WILD-TYPE" "AMP PEAK 19(13Q12.3) WILD-TYPE" 
                    TCGA-BR-8080                     TCGA-BR-8081 
"AMP PEAK 19(13Q12.3) WILD-TYPE" "AMP PEAK 19(13Q12.3) WILD-TYPE" 
                    TCGA-BR-8284                     TCGA-BR-8285 
"AMP PEAK 19(13Q12.3) WILD-TYPE" "AMP PEAK 19(13Q12.3) WILD-TYPE" 
                    TCGA-BR-8286                     TCGA-BR-8289 
"AMP PEAK 19(13Q12.3) WILD-TYPE" "AMP PEAK 19(13Q12.3) WILD-TYPE" 
                    TCGA-BR-8291                     TCGA-BR-8295 
"AMP PEAK 19(13Q12.3) WILD-TYPE" "AMP PEAK 19(13Q12.3) WILD-TYPE" 
                    TCGA-BR-8296                     TCGA-BR-8297 
"AMP PEAK 19(13Q12.3) WILD-TYPE" "AMP PEAK 19(13Q12.3) WILD-TYPE" 
                    TCGA-CD-5798                     TCGA-CD-5799 
"AMP PEAK 19(13Q12.3) WILD-TYPE"   "AMP PEAK 19(13Q12.3) MUTATED" 
                    TCGA-CD-5800                     TCGA-CD-5801 
  "AMP PEAK 19(13Q12.3) MUTATED" "AMP PEAK 19(13Q12.3) WILD-TYPE" 
                    TCGA-CD-5802                     TCGA-CD-5803 
"AMP PEAK 19(13Q12.3) WILD-TYPE" "AMP PEAK 19(13Q12.3) WILD-TYPE" 
                    TCGA-CG-4300                     TCGA-CG-4301 
  "AMP PEAK 19(13Q12.3) MUTATED"   "AMP PEAK 19(13Q12.3) MUTATED" 
                    TCGA-CG-4304                     TCGA-CG-4305 
"AMP PEAK 19(13Q12.3) WILD-TYPE"   "AMP PEAK 19(13Q12.3) MUTATED" 
                    TCGA-CG-4306                     TCGA-CG-4436 
"AMP PEAK 19(13Q12.3) WILD-TYPE"   "AMP PEAK 19(13Q12.3) MUTATED" 
                    TCGA-CG-4437                     TCGA-CG-4438 
  "AMP PEAK 19(13Q12.3) MUTATED"   "AMP PEAK 19(13Q12.3) MUTATED" 
                    TCGA-CG-4440                     TCGA-CG-4441 
"AMP PEAK 19(13Q12.3) WILD-TYPE" "AMP PEAK 19(13Q12.3) WILD-TYPE" 
                    TCGA-CG-4443                     TCGA-CG-4444 
"AMP PEAK 19(13Q12.3) WILD-TYPE"   "AMP PEAK 19(13Q12.3) MUTATED" 
                    TCGA-CG-4449                     TCGA-CG-4455 
"AMP PEAK 19(13Q12.3) WILD-TYPE" "AMP PEAK 19(13Q12.3) WILD-TYPE" 
                    TCGA-CG-4460                     TCGA-CG-4462 
"AMP PEAK 19(13Q12.3) WILD-TYPE" "AMP PEAK 19(13Q12.3) WILD-TYPE" 
                    TCGA-CG-4465                     TCGA-CG-4466 
"AMP PEAK 19(13Q12.3) WILD-TYPE" "AMP PEAK 19(13Q12.3) WILD-TYPE" 
                    TCGA-CG-4469                     TCGA-CG-4472 
  "AMP PEAK 19(13Q12.3) MUTATED"   "AMP PEAK 19(13Q12.3) MUTATED" 
                    TCGA-CG-4474                     TCGA-CG-4477 
  "AMP PEAK 19(13Q12.3) MUTATED" "AMP PEAK 19(13Q12.3) WILD-TYPE" 
                    TCGA-CG-5716                     TCGA-CG-5717 
"AMP PEAK 19(13Q12.3) WILD-TYPE" "AMP PEAK 19(13Q12.3) WILD-TYPE" 
                    TCGA-CG-5718                     TCGA-CG-5719 
"AMP PEAK 19(13Q12.3) WILD-TYPE"   "AMP PEAK 19(13Q12.3) MUTATED" 
                    TCGA-CG-5720                     TCGA-CG-5721 
"AMP PEAK 19(13Q12.3) WILD-TYPE" "AMP PEAK 19(13Q12.3) WILD-TYPE" 
                    TCGA-CG-5722                     TCGA-CG-5723 
"AMP PEAK 19(13Q12.3) WILD-TYPE" "AMP PEAK 19(13Q12.3) WILD-TYPE" 
                    TCGA-CG-5724                     TCGA-CG-5725 
  "AMP PEAK 19(13Q12.3) MUTATED" "AMP PEAK 19(13Q12.3) WILD-TYPE" 
                    TCGA-CG-5726                     TCGA-CG-5727 
"AMP PEAK 19(13Q12.3) WILD-TYPE"   "AMP PEAK 19(13Q12.3) MUTATED" 
                    TCGA-CG-5728                     TCGA-CG-5730 
"AMP PEAK 19(13Q12.3) WILD-TYPE"   "AMP PEAK 19(13Q12.3) MUTATED" 
                    TCGA-CG-5732                     TCGA-CG-5733 
  "AMP PEAK 19(13Q12.3) MUTATED" "AMP PEAK 19(13Q12.3) WILD-TYPE" 
                    TCGA-CG-5734                     TCGA-D7-5577 
  "AMP PEAK 19(13Q12.3) MUTATED"   "AMP PEAK 19(13Q12.3) MUTATED" 
                    TCGA-D7-5578                     TCGA-D7-5579 
  "AMP PEAK 19(13Q12.3) MUTATED" "AMP PEAK 19(13Q12.3) WILD-TYPE" 
                    TCGA-D7-6518                     TCGA-D7-6519 
  "AMP PEAK 19(13Q12.3) MUTATED" "AMP PEAK 19(13Q12.3) WILD-TYPE" 
                    TCGA-D7-6520                     TCGA-D7-6521 
"AMP PEAK 19(13Q12.3) WILD-TYPE"   "AMP PEAK 19(13Q12.3) MUTATED" 
                    TCGA-D7-6522                     TCGA-D7-6524 
"AMP PEAK 19(13Q12.3) WILD-TYPE"   "AMP PEAK 19(13Q12.3) MUTATED" 
                    TCGA-D7-6525                     TCGA-D7-6526 
"AMP PEAK 19(13Q12.3) WILD-TYPE"   "AMP PEAK 19(13Q12.3) MUTATED" 
                    TCGA-D7-6527                     TCGA-D7-6528 
"AMP PEAK 19(13Q12.3) WILD-TYPE" "AMP PEAK 19(13Q12.3) WILD-TYPE" 
                    TCGA-D7-6815                     TCGA-D7-6817 
  "AMP PEAK 19(13Q12.3) MUTATED"   "AMP PEAK 19(13Q12.3) MUTATED" 
                    TCGA-D7-6818                     TCGA-D7-6820 
  "AMP PEAK 19(13Q12.3) MUTATED"   "AMP PEAK 19(13Q12.3) MUTATED" 
                    TCGA-D7-6822                     TCGA-EQ-5647 
"AMP PEAK 19(13Q12.3) WILD-TYPE"   "AMP PEAK 19(13Q12.3) MUTATED" 
                    TCGA-EQ-8122                     TCGA-F1-6177 
"AMP PEAK 19(13Q12.3) WILD-TYPE" "AMP PEAK 19(13Q12.3) WILD-TYPE" 
                    TCGA-F1-6874                     TCGA-F1-6875 
"AMP PEAK 19(13Q12.3) WILD-TYPE"   "AMP PEAK 19(13Q12.3) MUTATED" 
                    TCGA-FP-7735                     TCGA-FP-7829 
  "AMP PEAK 19(13Q12.3) MUTATED"   "AMP PEAK 19(13Q12.3) MUTATED" 
                    TCGA-FP-7916                     TCGA-FP-7998 
"AMP PEAK 19(13Q12.3) WILD-TYPE" "AMP PEAK 19(13Q12.3) WILD-TYPE" 
                    TCGA-HJ-7597                     TCGA-IN-7806 
"AMP PEAK 19(13Q12.3) WILD-TYPE" "AMP PEAK 19(13Q12.3) WILD-TYPE" 
                    TCGA-IN-7808                     TCGA-IP-7968 
  "AMP PEAK 19(13Q12.3) MUTATED" "AMP PEAK 19(13Q12.3) WILD-TYPE" 
                    TCGA-B7-5816                     TCGA-B7-5818 
"AMP PEAK 19(13Q12.3) WILD-TYPE"   "AMP PEAK 19(13Q12.3) MUTATED" 
                    TCGA-BR-6452                     TCGA-BR-6455 
"AMP PEAK 19(13Q12.3) WILD-TYPE" "AMP PEAK 19(13Q12.3) WILD-TYPE" 
                    TCGA-BR-6457                     TCGA-BR-6458 
"AMP PEAK 19(13Q12.3) WILD-TYPE" "AMP PEAK 19(13Q12.3) WILD-TYPE" 
                    TCGA-BR-6563                     TCGA-BR-6564 
  "AMP PEAK 19(13Q12.3) MUTATED" "AMP PEAK 19(13Q12.3) WILD-TYPE" 
                    TCGA-BR-6565                     TCGA-BR-6566 
  "AMP PEAK 19(13Q12.3) MUTATED"   "AMP PEAK 19(13Q12.3) MUTATED" 
                    TCGA-BR-6705                     TCGA-BR-6706 
  "AMP PEAK 19(13Q12.3) MUTATED" "AMP PEAK 19(13Q12.3) WILD-TYPE" 
                    TCGA-BR-6707                     TCGA-BR-6709 
"AMP PEAK 19(13Q12.3) WILD-TYPE" "AMP PEAK 19(13Q12.3) WILD-TYPE" 
                    TCGA-BR-6710                     TCGA-BR-6801 
"AMP PEAK 19(13Q12.3) WILD-TYPE"   "AMP PEAK 19(13Q12.3) MUTATED" 
                    TCGA-BR-6802                     TCGA-BR-6803 
"AMP PEAK 19(13Q12.3) WILD-TYPE" "AMP PEAK 19(13Q12.3) WILD-TYPE" 
                    TCGA-BR-6852                     TCGA-BR-7196 
"AMP PEAK 19(13Q12.3) WILD-TYPE" "AMP PEAK 19(13Q12.3) WILD-TYPE" 
                    TCGA-BR-7197                     TCGA-BR-7703 
  "AMP PEAK 19(13Q12.3) MUTATED" "AMP PEAK 19(13Q12.3) WILD-TYPE" 
                    TCGA-BR-7704                     TCGA-BR-7707 
  "AMP PEAK 19(13Q12.3) MUTATED" "AMP PEAK 19(13Q12.3) WILD-TYPE" 
                    TCGA-BR-7715                     TCGA-BR-7716 
"AMP PEAK 19(13Q12.3) WILD-TYPE" "AMP PEAK 19(13Q12.3) WILD-TYPE" 
                    TCGA-BR-7717                     TCGA-BR-7722 
  "AMP PEAK 19(13Q12.3) MUTATED" "AMP PEAK 19(13Q12.3) WILD-TYPE" 
                    TCGA-BR-7723                     TCGA-BR-7851 
  "AMP PEAK 19(13Q12.3) MUTATED" "AMP PEAK 19(13Q12.3) WILD-TYPE" 
                    TCGA-BR-7901                     TCGA-BR-7957 
  "AMP PEAK 19(13Q12.3) MUTATED" "AMP PEAK 19(13Q12.3) WILD-TYPE" 
                    TCGA-BR-7958                     TCGA-BR-7959 
"AMP PEAK 19(13Q12.3) WILD-TYPE" "AMP PEAK 19(13Q12.3) WILD-TYPE" 
                    TCGA-BR-8059                     TCGA-BR-8060 
"AMP PEAK 19(13Q12.3) WILD-TYPE" "AMP PEAK 19(13Q12.3) WILD-TYPE" 
                    TCGA-BR-8077                     TCGA-BR-8078 
"AMP PEAK 19(13Q12.3) WILD-TYPE" "AMP PEAK 19(13Q12.3) WILD-TYPE" 
                    TCGA-BR-8080                     TCGA-BR-8081 
"AMP PEAK 19(13Q12.3) WILD-TYPE" "AMP PEAK 19(13Q12.3) WILD-TYPE" 
                    TCGA-BR-8284                     TCGA-BR-8285 
"AMP PEAK 19(13Q12.3) WILD-TYPE" "AMP PEAK 19(13Q12.3) WILD-TYPE" 
                    TCGA-BR-8286                     TCGA-BR-8289 
"AMP PEAK 19(13Q12.3) WILD-TYPE" "AMP PEAK 19(13Q12.3) WILD-TYPE" 
                    TCGA-BR-8291                     TCGA-BR-8295 
"AMP PEAK 19(13Q12.3) WILD-TYPE" "AMP PEAK 19(13Q12.3) WILD-TYPE" 
                    TCGA-BR-8296                     TCGA-BR-8297 
"AMP PEAK 19(13Q12.3) WILD-TYPE" "AMP PEAK 19(13Q12.3) WILD-TYPE" 
                    TCGA-CD-5798                     TCGA-CD-5799 
"AMP PEAK 19(13Q12.3) WILD-TYPE"   "AMP PEAK 19(13Q12.3) MUTATED" 
                    TCGA-CD-5800                     TCGA-CD-5801 
  "AMP PEAK 19(13Q12.3) MUTATED" "AMP PEAK 19(13Q12.3) WILD-TYPE" 
                    TCGA-CD-5802                     TCGA-CD-5803 
"AMP PEAK 19(13Q12.3) WILD-TYPE" "AMP PEAK 19(13Q12.3) WILD-TYPE" 
                    TCGA-CG-4300                     TCGA-CG-4301 
  "AMP PEAK 19(13Q12.3) MUTATED"   "AMP PEAK 19(13Q12.3) MUTATED" 
                    TCGA-CG-4304                     TCGA-CG-4305 
"AMP PEAK 19(13Q12.3) WILD-TYPE"   "AMP PEAK 19(13Q12.3) MUTATED" 
                    TCGA-CG-4306                     TCGA-CG-4436 
"AMP PEAK 19(13Q12.3) WILD-TYPE"   "AMP PEAK 19(13Q12.3) MUTATED" 
                    TCGA-CG-4437                     TCGA-CG-4438 
  "AMP PEAK 19(13Q12.3) MUTATED"   "AMP PEAK 19(13Q12.3) MUTATED" 
                    TCGA-CG-4440                     TCGA-CG-4441 
"AMP PEAK 19(13Q12.3) WILD-TYPE" "AMP PEAK 19(13Q12.3) WILD-TYPE" 
                    TCGA-CG-4443                     TCGA-CG-4444 
"AMP PEAK 19(13Q12.3) WILD-TYPE"   "AMP PEAK 19(13Q12.3) MUTATED" 
                    TCGA-CG-4449                     TCGA-CG-4455 
"AMP PEAK 19(13Q12.3) WILD-TYPE" "AMP PEAK 19(13Q12.3) WILD-TYPE" 
                    TCGA-CG-4460                     TCGA-CG-4462 
"AMP PEAK 19(13Q12.3) WILD-TYPE" "AMP PEAK 19(13Q12.3) WILD-TYPE" 
                    TCGA-CG-4465                     TCGA-CG-4466 
"AMP PEAK 19(13Q12.3) WILD-TYPE" "AMP PEAK 19(13Q12.3) WILD-TYPE" 
                    TCGA-CG-4469                     TCGA-CG-4472 
  "AMP PEAK 19(13Q12.3) MUTATED"   "AMP PEAK 19(13Q12.3) MUTATED" 
                    TCGA-CG-4474                     TCGA-CG-4477 
  "AMP PEAK 19(13Q12.3) MUTATED" "AMP PEAK 19(13Q12.3) WILD-TYPE" 
                    TCGA-CG-5716                     TCGA-CG-5717 
"AMP PEAK 19(13Q12.3) WILD-TYPE" "AMP PEAK 19(13Q12.3) WILD-TYPE" 
                    TCGA-CG-5718                     TCGA-CG-5719 
"AMP PEAK 19(13Q12.3) WILD-TYPE"   "AMP PEAK 19(13Q12.3) MUTATED" 
                    TCGA-CG-5720                     TCGA-CG-5721 
"AMP PEAK 19(13Q12.3) WILD-TYPE" "AMP PEAK 19(13Q12.3) WILD-TYPE" 
                    TCGA-CG-5722                     TCGA-CG-5723 
"AMP PEAK 19(13Q12.3) WILD-TYPE" "AMP PEAK 19(13Q12.3) WILD-TYPE" 
                    TCGA-CG-5724                     TCGA-CG-5725 
  "AMP PEAK 19(13Q12.3) MUTATED" "AMP PEAK 19(13Q12.3) WILD-TYPE" 
                    TCGA-CG-5726                     TCGA-CG-5727 
"AMP PEAK 19(13Q12.3) WILD-TYPE"   "AMP PEAK 19(13Q12.3) MUTATED" 
                    TCGA-CG-5728                     TCGA-CG-5730 
"AMP PEAK 19(13Q12.3) WILD-TYPE"   "AMP PEAK 19(13Q12.3) MUTATED" 
                    TCGA-CG-5732                     TCGA-CG-5733 
  "AMP PEAK 19(13Q12.3) MUTATED" "AMP PEAK 19(13Q12.3) WILD-TYPE" 
                    TCGA-CG-5734                     TCGA-D7-5577 
  "AMP PEAK 19(13Q12.3) MUTATED"   "AMP PEAK 19(13Q12.3) MUTATED" 
                    TCGA-D7-5578                     TCGA-D7-5579 
  "AMP PEAK 19(13Q12.3) MUTATED" "AMP PEAK 19(13Q12.3) WILD-TYPE" 
                    TCGA-D7-6518                     TCGA-D7-6519 
  "AMP PEAK 19(13Q12.3) MUTATED" "AMP PEAK 19(13Q12.3) WILD-TYPE" 
                    TCGA-D7-6520                     TCGA-D7-6521 
"AMP PEAK 19(13Q12.3) WILD-TYPE"   "AMP PEAK 19(13Q12.3) MUTATED" 
                    TCGA-D7-6522                     TCGA-D7-6524 
"AMP PEAK 19(13Q12.3) WILD-TYPE"   "AMP PEAK 19(13Q12.3) MUTATED" 
                    TCGA-D7-6525                     TCGA-D7-6526 
"AMP PEAK 19(13Q12.3) WILD-TYPE"   "AMP PEAK 19(13Q12.3) MUTATED" 
                    TCGA-D7-6527                     TCGA-D7-6528 
"AMP PEAK 19(13Q12.3) WILD-TYPE" "AMP PEAK 19(13Q12.3) WILD-TYPE" 
                    TCGA-D7-6815                     TCGA-D7-6817 
  "AMP PEAK 19(13Q12.3) MUTATED"   "AMP PEAK 19(13Q12.3) MUTATED" 
                    TCGA-D7-6818                     TCGA-D7-6820 
  "AMP PEAK 19(13Q12.3) MUTATED"   "AMP PEAK 19(13Q12.3) MUTATED" 
                    TCGA-D7-6822                     TCGA-EQ-5647 
"AMP PEAK 19(13Q12.3) WILD-TYPE"   "AMP PEAK 19(13Q12.3) MUTATED" 
                    TCGA-EQ-8122                     TCGA-F1-6177 
"AMP PEAK 19(13Q12.3) WILD-TYPE" "AMP PEAK 19(13Q12.3) WILD-TYPE" 
                    TCGA-F1-6874                     TCGA-F1-6875 
"AMP PEAK 19(13Q12.3) WILD-TYPE"   "AMP PEAK 19(13Q12.3) MUTATED" 
                    TCGA-FP-7735                     TCGA-FP-7829 
  "AMP PEAK 19(13Q12.3) MUTATED"   "AMP PEAK 19(13Q12.3) MUTATED" 
                    TCGA-FP-7916                     TCGA-FP-7998 
"AMP PEAK 19(13Q12.3) WILD-TYPE" "AMP PEAK 19(13Q12.3) WILD-TYPE" 
                    TCGA-HJ-7597                     TCGA-IN-7806 
"AMP PEAK 19(13Q12.3) WILD-TYPE" "AMP PEAK 19(13Q12.3) WILD-TYPE" 
                    TCGA-IN-7808                     TCGA-IP-7968 
  "AMP PEAK 19(13Q12.3) MUTATED" "AMP PEAK 19(13Q12.3) WILD-TYPE" 
[1] "hr=" "2.2"
D19V2, continuous
D19V3, binary
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  AMP PEAK 19(13Q12.3) MUTATED     18   40
  AMP PEAK 19(13Q12.3) WILD-TYPE   47   56
        clus
vv       AMP PEAK 19(13Q12.3) MUTATED AMP PEAK 19(13Q12.3) WILD-TYPE
  FEMALE                           18                             47
  MALE                             40                             56
D19V4, multiclass
D19V5, multiclass
    clus
vv   AMP PEAK 19(13Q12.3) MUTATED AMP PEAK 19(13Q12.3) WILD-TYPE
  T1                            1                              5
  T2                           23                             30
  T3                           20                             39
  T4                            9                             24
D19V6, multiclass
    clus
vv   AMP PEAK 19(13Q12.3) MUTATED AMP PEAK 19(13Q12.3) WILD-TYPE
  N0                           13                             37
  N1                           18                             39
  N2                           10                             14
  N3                           11                              8
D19V7, multiclass
    clus
vv   AMP PEAK 19(13Q12.3) MUTATED AMP PEAK 19(13Q12.3) WILD-TYPE
  M0                           49                             83
  M1                            7                             11
  MX                            2                              9
D19V8, multiclass
     clus
vv    AMP PEAK 19(13Q12.3) MUTATED AMP PEAK 19(13Q12.3) WILD-TYPE
  I                              5                             20
  II                            15                             28
  III                           17                             31
  IV                            14                             15
D19V9, binary
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  AMP PEAK 19(13Q12.3) MUTATED     56    2
  AMP PEAK 19(13Q12.3) WILD-TYPE  100    3
     clus
vv    AMP PEAK 19(13Q12.3) MUTATED AMP PEAK 19(13Q12.3) WILD-TYPE
  NO                             2                              3
  YES                           56                            100

Clustering(20) Variable = Amp Peak 20(13q22.1) mutation analysis
D20V1, survival
                    TCGA-B7-5816                     TCGA-B7-5818 
"AMP PEAK 20(13Q22.1) WILD-TYPE"   "AMP PEAK 20(13Q22.1) MUTATED" 
                    TCGA-BR-6452                     TCGA-BR-6455 
"AMP PEAK 20(13Q22.1) WILD-TYPE" "AMP PEAK 20(13Q22.1) WILD-TYPE" 
                    TCGA-BR-6457                     TCGA-BR-6458 
"AMP PEAK 20(13Q22.1) WILD-TYPE" "AMP PEAK 20(13Q22.1) WILD-TYPE" 
                    TCGA-BR-6563                     TCGA-BR-6564 
  "AMP PEAK 20(13Q22.1) MUTATED" "AMP PEAK 20(13Q22.1) WILD-TYPE" 
                    TCGA-BR-6565                     TCGA-BR-6566 
  "AMP PEAK 20(13Q22.1) MUTATED"   "AMP PEAK 20(13Q22.1) MUTATED" 
                    TCGA-BR-6705                     TCGA-BR-6706 
"AMP PEAK 20(13Q22.1) WILD-TYPE" "AMP PEAK 20(13Q22.1) WILD-TYPE" 
                    TCGA-BR-6707                     TCGA-BR-6709 
  "AMP PEAK 20(13Q22.1) MUTATED" "AMP PEAK 20(13Q22.1) WILD-TYPE" 
                    TCGA-BR-6710                     TCGA-BR-6801 
"AMP PEAK 20(13Q22.1) WILD-TYPE"   "AMP PEAK 20(13Q22.1) MUTATED" 
                    TCGA-BR-6802                     TCGA-BR-6803 
"AMP PEAK 20(13Q22.1) WILD-TYPE" "AMP PEAK 20(13Q22.1) WILD-TYPE" 
                    TCGA-BR-6852                     TCGA-BR-7196 
"AMP PEAK 20(13Q22.1) WILD-TYPE" "AMP PEAK 20(13Q22.1) WILD-TYPE" 
                    TCGA-BR-7197                     TCGA-BR-7703 
  "AMP PEAK 20(13Q22.1) MUTATED" "AMP PEAK 20(13Q22.1) WILD-TYPE" 
                    TCGA-BR-7704                     TCGA-BR-7707 
  "AMP PEAK 20(13Q22.1) MUTATED" "AMP PEAK 20(13Q22.1) WILD-TYPE" 
                    TCGA-BR-7715                     TCGA-BR-7716 
  "AMP PEAK 20(13Q22.1) MUTATED"   "AMP PEAK 20(13Q22.1) MUTATED" 
                    TCGA-BR-7717                     TCGA-BR-7722 
  "AMP PEAK 20(13Q22.1) MUTATED" "AMP PEAK 20(13Q22.1) WILD-TYPE" 
                    TCGA-BR-7723                     TCGA-BR-7851 
  "AMP PEAK 20(13Q22.1) MUTATED" "AMP PEAK 20(13Q22.1) WILD-TYPE" 
                    TCGA-BR-7901                     TCGA-BR-7957 
  "AMP PEAK 20(13Q22.1) MUTATED" "AMP PEAK 20(13Q22.1) WILD-TYPE" 
                    TCGA-BR-7958                     TCGA-BR-7959 
"AMP PEAK 20(13Q22.1) WILD-TYPE" "AMP PEAK 20(13Q22.1) WILD-TYPE" 
                    TCGA-BR-8059                     TCGA-BR-8060 
"AMP PEAK 20(13Q22.1) WILD-TYPE" "AMP PEAK 20(13Q22.1) WILD-TYPE" 
                    TCGA-BR-8077                     TCGA-BR-8078 
"AMP PEAK 20(13Q22.1) WILD-TYPE" "AMP PEAK 20(13Q22.1) WILD-TYPE" 
                    TCGA-BR-8080                     TCGA-BR-8081 
"AMP PEAK 20(13Q22.1) WILD-TYPE" "AMP PEAK 20(13Q22.1) WILD-TYPE" 
                    TCGA-BR-8284                     TCGA-BR-8285 
"AMP PEAK 20(13Q22.1) WILD-TYPE" "AMP PEAK 20(13Q22.1) WILD-TYPE" 
                    TCGA-BR-8286                     TCGA-BR-8289 
"AMP PEAK 20(13Q22.1) WILD-TYPE" "AMP PEAK 20(13Q22.1) WILD-TYPE" 
                    TCGA-BR-8291                     TCGA-BR-8295 
"AMP PEAK 20(13Q22.1) WILD-TYPE" "AMP PEAK 20(13Q22.1) WILD-TYPE" 
                    TCGA-BR-8296                     TCGA-BR-8297 
"AMP PEAK 20(13Q22.1) WILD-TYPE" "AMP PEAK 20(13Q22.1) WILD-TYPE" 
                    TCGA-CD-5798                     TCGA-CD-5799 
"AMP PEAK 20(13Q22.1) WILD-TYPE"   "AMP PEAK 20(13Q22.1) MUTATED" 
                    TCGA-CD-5800                     TCGA-CD-5801 
  "AMP PEAK 20(13Q22.1) MUTATED" "AMP PEAK 20(13Q22.1) WILD-TYPE" 
                    TCGA-CD-5802                     TCGA-CD-5803 
  "AMP PEAK 20(13Q22.1) MUTATED" "AMP PEAK 20(13Q22.1) WILD-TYPE" 
                    TCGA-CG-4300                     TCGA-CG-4301 
  "AMP PEAK 20(13Q22.1) MUTATED" "AMP PEAK 20(13Q22.1) WILD-TYPE" 
                    TCGA-CG-4304                     TCGA-CG-4305 
"AMP PEAK 20(13Q22.1) WILD-TYPE"   "AMP PEAK 20(13Q22.1) MUTATED" 
                    TCGA-CG-4306                     TCGA-CG-4436 
  "AMP PEAK 20(13Q22.1) MUTATED"   "AMP PEAK 20(13Q22.1) MUTATED" 
                    TCGA-CG-4437                     TCGA-CG-4438 
"AMP PEAK 20(13Q22.1) WILD-TYPE"   "AMP PEAK 20(13Q22.1) MUTATED" 
                    TCGA-CG-4440                     TCGA-CG-4441 
  "AMP PEAK 20(13Q22.1) MUTATED" "AMP PEAK 20(13Q22.1) WILD-TYPE" 
                    TCGA-CG-4443                     TCGA-CG-4444 
  "AMP PEAK 20(13Q22.1) MUTATED" "AMP PEAK 20(13Q22.1) WILD-TYPE" 
                    TCGA-CG-4449                     TCGA-CG-4455 
"AMP PEAK 20(13Q22.1) WILD-TYPE" "AMP PEAK 20(13Q22.1) WILD-TYPE" 
                    TCGA-CG-4460                     TCGA-CG-4462 
"AMP PEAK 20(13Q22.1) WILD-TYPE" "AMP PEAK 20(13Q22.1) WILD-TYPE" 
                    TCGA-CG-4465                     TCGA-CG-4466 
"AMP PEAK 20(13Q22.1) WILD-TYPE" "AMP PEAK 20(13Q22.1) WILD-TYPE" 
                    TCGA-CG-4469                     TCGA-CG-4472 
  "AMP PEAK 20(13Q22.1) MUTATED"   "AMP PEAK 20(13Q22.1) MUTATED" 
                    TCGA-CG-4474                     TCGA-CG-4477 
  "AMP PEAK 20(13Q22.1) MUTATED" "AMP PEAK 20(13Q22.1) WILD-TYPE" 
                    TCGA-CG-5716                     TCGA-CG-5717 
"AMP PEAK 20(13Q22.1) WILD-TYPE" "AMP PEAK 20(13Q22.1) WILD-TYPE" 
                    TCGA-CG-5718                     TCGA-CG-5719 
  "AMP PEAK 20(13Q22.1) MUTATED"   "AMP PEAK 20(13Q22.1) MUTATED" 
                    TCGA-CG-5720                     TCGA-CG-5721 
"AMP PEAK 20(13Q22.1) WILD-TYPE"   "AMP PEAK 20(13Q22.1) MUTATED" 
                    TCGA-CG-5722                     TCGA-CG-5723 
"AMP PEAK 20(13Q22.1) WILD-TYPE"   "AMP PEAK 20(13Q22.1) MUTATED" 
                    TCGA-CG-5724                     TCGA-CG-5725 
"AMP PEAK 20(13Q22.1) WILD-TYPE"   "AMP PEAK 20(13Q22.1) MUTATED" 
                    TCGA-CG-5726                     TCGA-CG-5727 
"AMP PEAK 20(13Q22.1) WILD-TYPE" "AMP PEAK 20(13Q22.1) WILD-TYPE" 
                    TCGA-CG-5728                     TCGA-CG-5730 
"AMP PEAK 20(13Q22.1) WILD-TYPE"   "AMP PEAK 20(13Q22.1) MUTATED" 
                    TCGA-CG-5732                     TCGA-CG-5733 
  "AMP PEAK 20(13Q22.1) MUTATED" "AMP PEAK 20(13Q22.1) WILD-TYPE" 
                    TCGA-CG-5734                     TCGA-D7-5577 
  "AMP PEAK 20(13Q22.1) MUTATED"   "AMP PEAK 20(13Q22.1) MUTATED" 
                    TCGA-D7-5578                     TCGA-D7-5579 
  "AMP PEAK 20(13Q22.1) MUTATED"   "AMP PEAK 20(13Q22.1) MUTATED" 
                    TCGA-D7-6518                     TCGA-D7-6519 
  "AMP PEAK 20(13Q22.1) MUTATED" "AMP PEAK 20(13Q22.1) WILD-TYPE" 
                    TCGA-D7-6520                     TCGA-D7-6521 
"AMP PEAK 20(13Q22.1) WILD-TYPE"   "AMP PEAK 20(13Q22.1) MUTATED" 
                    TCGA-D7-6522                     TCGA-D7-6524 
"AMP PEAK 20(13Q22.1) WILD-TYPE"   "AMP PEAK 20(13Q22.1) MUTATED" 
                    TCGA-D7-6525                     TCGA-D7-6526 
"AMP PEAK 20(13Q22.1) WILD-TYPE"   "AMP PEAK 20(13Q22.1) MUTATED" 
                    TCGA-D7-6527                     TCGA-D7-6528 
  "AMP PEAK 20(13Q22.1) MUTATED" "AMP PEAK 20(13Q22.1) WILD-TYPE" 
                    TCGA-D7-6815                     TCGA-D7-6817 
  "AMP PEAK 20(13Q22.1) MUTATED" "AMP PEAK 20(13Q22.1) WILD-TYPE" 
                    TCGA-D7-6818                     TCGA-D7-6820 
  "AMP PEAK 20(13Q22.1) MUTATED"   "AMP PEAK 20(13Q22.1) MUTATED" 
                    TCGA-D7-6822                     TCGA-EQ-5647 
  "AMP PEAK 20(13Q22.1) MUTATED"   "AMP PEAK 20(13Q22.1) MUTATED" 
                    TCGA-EQ-8122                     TCGA-F1-6177 
"AMP PEAK 20(13Q22.1) WILD-TYPE" "AMP PEAK 20(13Q22.1) WILD-TYPE" 
                    TCGA-F1-6874                     TCGA-F1-6875 
"AMP PEAK 20(13Q22.1) WILD-TYPE"   "AMP PEAK 20(13Q22.1) MUTATED" 
                    TCGA-FP-7735                     TCGA-FP-7829 
"AMP PEAK 20(13Q22.1) WILD-TYPE"   "AMP PEAK 20(13Q22.1) MUTATED" 
                    TCGA-FP-7916                     TCGA-FP-7998 
"AMP PEAK 20(13Q22.1) WILD-TYPE" "AMP PEAK 20(13Q22.1) WILD-TYPE" 
                    TCGA-HJ-7597                     TCGA-IN-7806 
"AMP PEAK 20(13Q22.1) WILD-TYPE" "AMP PEAK 20(13Q22.1) WILD-TYPE" 
                    TCGA-IN-7808                     TCGA-IP-7968 
"AMP PEAK 20(13Q22.1) WILD-TYPE"   "AMP PEAK 20(13Q22.1) MUTATED" 
                    TCGA-B7-5816                     TCGA-B7-5818 
"AMP PEAK 20(13Q22.1) WILD-TYPE"   "AMP PEAK 20(13Q22.1) MUTATED" 
                    TCGA-BR-6452                     TCGA-BR-6455 
"AMP PEAK 20(13Q22.1) WILD-TYPE" "AMP PEAK 20(13Q22.1) WILD-TYPE" 
                    TCGA-BR-6457                     TCGA-BR-6458 
"AMP PEAK 20(13Q22.1) WILD-TYPE" "AMP PEAK 20(13Q22.1) WILD-TYPE" 
                    TCGA-BR-6563                     TCGA-BR-6564 
  "AMP PEAK 20(13Q22.1) MUTATED" "AMP PEAK 20(13Q22.1) WILD-TYPE" 
                    TCGA-BR-6565                     TCGA-BR-6566 
  "AMP PEAK 20(13Q22.1) MUTATED"   "AMP PEAK 20(13Q22.1) MUTATED" 
                    TCGA-BR-6705                     TCGA-BR-6706 
"AMP PEAK 20(13Q22.1) WILD-TYPE" "AMP PEAK 20(13Q22.1) WILD-TYPE" 
                    TCGA-BR-6707                     TCGA-BR-6709 
  "AMP PEAK 20(13Q22.1) MUTATED" "AMP PEAK 20(13Q22.1) WILD-TYPE" 
                    TCGA-BR-6710                     TCGA-BR-6801 
"AMP PEAK 20(13Q22.1) WILD-TYPE"   "AMP PEAK 20(13Q22.1) MUTATED" 
                    TCGA-BR-6802                     TCGA-BR-6803 
"AMP PEAK 20(13Q22.1) WILD-TYPE" "AMP PEAK 20(13Q22.1) WILD-TYPE" 
                    TCGA-BR-6852                     TCGA-BR-7196 
"AMP PEAK 20(13Q22.1) WILD-TYPE" "AMP PEAK 20(13Q22.1) WILD-TYPE" 
                    TCGA-BR-7197                     TCGA-BR-7703 
  "AMP PEAK 20(13Q22.1) MUTATED" "AMP PEAK 20(13Q22.1) WILD-TYPE" 
                    TCGA-BR-7704                     TCGA-BR-7707 
  "AMP PEAK 20(13Q22.1) MUTATED" "AMP PEAK 20(13Q22.1) WILD-TYPE" 
                    TCGA-BR-7715                     TCGA-BR-7716 
  "AMP PEAK 20(13Q22.1) MUTATED"   "AMP PEAK 20(13Q22.1) MUTATED" 
                    TCGA-BR-7717                     TCGA-BR-7722 
  "AMP PEAK 20(13Q22.1) MUTATED" "AMP PEAK 20(13Q22.1) WILD-TYPE" 
                    TCGA-BR-7723                     TCGA-BR-7851 
  "AMP PEAK 20(13Q22.1) MUTATED" "AMP PEAK 20(13Q22.1) WILD-TYPE" 
                    TCGA-BR-7901                     TCGA-BR-7957 
  "AMP PEAK 20(13Q22.1) MUTATED" "AMP PEAK 20(13Q22.1) WILD-TYPE" 
                    TCGA-BR-7958                     TCGA-BR-7959 
"AMP PEAK 20(13Q22.1) WILD-TYPE" "AMP PEAK 20(13Q22.1) WILD-TYPE" 
                    TCGA-BR-8059                     TCGA-BR-8060 
"AMP PEAK 20(13Q22.1) WILD-TYPE" "AMP PEAK 20(13Q22.1) WILD-TYPE" 
                    TCGA-BR-8077                     TCGA-BR-8078 
"AMP PEAK 20(13Q22.1) WILD-TYPE" "AMP PEAK 20(13Q22.1) WILD-TYPE" 
                    TCGA-BR-8080                     TCGA-BR-8081 
"AMP PEAK 20(13Q22.1) WILD-TYPE" "AMP PEAK 20(13Q22.1) WILD-TYPE" 
                    TCGA-BR-8284                     TCGA-BR-8285 
"AMP PEAK 20(13Q22.1) WILD-TYPE" "AMP PEAK 20(13Q22.1) WILD-TYPE" 
                    TCGA-BR-8286                     TCGA-BR-8289 
"AMP PEAK 20(13Q22.1) WILD-TYPE" "AMP PEAK 20(13Q22.1) WILD-TYPE" 
                    TCGA-BR-8291                     TCGA-BR-8295 
"AMP PEAK 20(13Q22.1) WILD-TYPE" "AMP PEAK 20(13Q22.1) WILD-TYPE" 
                    TCGA-BR-8296                     TCGA-BR-8297 
"AMP PEAK 20(13Q22.1) WILD-TYPE" "AMP PEAK 20(13Q22.1) WILD-TYPE" 
                    TCGA-CD-5798                     TCGA-CD-5799 
"AMP PEAK 20(13Q22.1) WILD-TYPE"   "AMP PEAK 20(13Q22.1) MUTATED" 
                    TCGA-CD-5800                     TCGA-CD-5801 
  "AMP PEAK 20(13Q22.1) MUTATED" "AMP PEAK 20(13Q22.1) WILD-TYPE" 
                    TCGA-CD-5802                     TCGA-CD-5803 
  "AMP PEAK 20(13Q22.1) MUTATED" "AMP PEAK 20(13Q22.1) WILD-TYPE" 
                    TCGA-CG-4300                     TCGA-CG-4301 
  "AMP PEAK 20(13Q22.1) MUTATED" "AMP PEAK 20(13Q22.1) WILD-TYPE" 
                    TCGA-CG-4304                     TCGA-CG-4305 
"AMP PEAK 20(13Q22.1) WILD-TYPE"   "AMP PEAK 20(13Q22.1) MUTATED" 
                    TCGA-CG-4306                     TCGA-CG-4436 
  "AMP PEAK 20(13Q22.1) MUTATED"   "AMP PEAK 20(13Q22.1) MUTATED" 
                    TCGA-CG-4437                     TCGA-CG-4438 
"AMP PEAK 20(13Q22.1) WILD-TYPE"   "AMP PEAK 20(13Q22.1) MUTATED" 
                    TCGA-CG-4440                     TCGA-CG-4441 
  "AMP PEAK 20(13Q22.1) MUTATED" "AMP PEAK 20(13Q22.1) WILD-TYPE" 
                    TCGA-CG-4443                     TCGA-CG-4444 
  "AMP PEAK 20(13Q22.1) MUTATED" "AMP PEAK 20(13Q22.1) WILD-TYPE" 
                    TCGA-CG-4449                     TCGA-CG-4455 
"AMP PEAK 20(13Q22.1) WILD-TYPE" "AMP PEAK 20(13Q22.1) WILD-TYPE" 
                    TCGA-CG-4460                     TCGA-CG-4462 
"AMP PEAK 20(13Q22.1) WILD-TYPE" "AMP PEAK 20(13Q22.1) WILD-TYPE" 
                    TCGA-CG-4465                     TCGA-CG-4466 
"AMP PEAK 20(13Q22.1) WILD-TYPE" "AMP PEAK 20(13Q22.1) WILD-TYPE" 
                    TCGA-CG-4469                     TCGA-CG-4472 
  "AMP PEAK 20(13Q22.1) MUTATED"   "AMP PEAK 20(13Q22.1) MUTATED" 
                    TCGA-CG-4474                     TCGA-CG-4477 
  "AMP PEAK 20(13Q22.1) MUTATED" "AMP PEAK 20(13Q22.1) WILD-TYPE" 
                    TCGA-CG-5716                     TCGA-CG-5717 
"AMP PEAK 20(13Q22.1) WILD-TYPE" "AMP PEAK 20(13Q22.1) WILD-TYPE" 
                    TCGA-CG-5718                     TCGA-CG-5719 
  "AMP PEAK 20(13Q22.1) MUTATED"   "AMP PEAK 20(13Q22.1) MUTATED" 
                    TCGA-CG-5720                     TCGA-CG-5721 
"AMP PEAK 20(13Q22.1) WILD-TYPE"   "AMP PEAK 20(13Q22.1) MUTATED" 
                    TCGA-CG-5722                     TCGA-CG-5723 
"AMP PEAK 20(13Q22.1) WILD-TYPE"   "AMP PEAK 20(13Q22.1) MUTATED" 
                    TCGA-CG-5724                     TCGA-CG-5725 
"AMP PEAK 20(13Q22.1) WILD-TYPE"   "AMP PEAK 20(13Q22.1) MUTATED" 
                    TCGA-CG-5726                     TCGA-CG-5727 
"AMP PEAK 20(13Q22.1) WILD-TYPE" "AMP PEAK 20(13Q22.1) WILD-TYPE" 
                    TCGA-CG-5728                     TCGA-CG-5730 
"AMP PEAK 20(13Q22.1) WILD-TYPE"   "AMP PEAK 20(13Q22.1) MUTATED" 
                    TCGA-CG-5732                     TCGA-CG-5733 
  "AMP PEAK 20(13Q22.1) MUTATED" "AMP PEAK 20(13Q22.1) WILD-TYPE" 
                    TCGA-CG-5734                     TCGA-D7-5577 
  "AMP PEAK 20(13Q22.1) MUTATED"   "AMP PEAK 20(13Q22.1) MUTATED" 
                    TCGA-D7-5578                     TCGA-D7-5579 
  "AMP PEAK 20(13Q22.1) MUTATED"   "AMP PEAK 20(13Q22.1) MUTATED" 
                    TCGA-D7-6518                     TCGA-D7-6519 
  "AMP PEAK 20(13Q22.1) MUTATED" "AMP PEAK 20(13Q22.1) WILD-TYPE" 
                    TCGA-D7-6520                     TCGA-D7-6521 
"AMP PEAK 20(13Q22.1) WILD-TYPE"   "AMP PEAK 20(13Q22.1) MUTATED" 
                    TCGA-D7-6522                     TCGA-D7-6524 
"AMP PEAK 20(13Q22.1) WILD-TYPE"   "AMP PEAK 20(13Q22.1) MUTATED" 
                    TCGA-D7-6525                     TCGA-D7-6526 
"AMP PEAK 20(13Q22.1) WILD-TYPE"   "AMP PEAK 20(13Q22.1) MUTATED" 
                    TCGA-D7-6527                     TCGA-D7-6528 
  "AMP PEAK 20(13Q22.1) MUTATED" "AMP PEAK 20(13Q22.1) WILD-TYPE" 
                    TCGA-D7-6815                     TCGA-D7-6817 
  "AMP PEAK 20(13Q22.1) MUTATED" "AMP PEAK 20(13Q22.1) WILD-TYPE" 
                    TCGA-D7-6818                     TCGA-D7-6820 
  "AMP PEAK 20(13Q22.1) MUTATED"   "AMP PEAK 20(13Q22.1) MUTATED" 
                    TCGA-D7-6822                     TCGA-EQ-5647 
  "AMP PEAK 20(13Q22.1) MUTATED"   "AMP PEAK 20(13Q22.1) MUTATED" 
                    TCGA-EQ-8122                     TCGA-F1-6177 
"AMP PEAK 20(13Q22.1) WILD-TYPE" "AMP PEAK 20(13Q22.1) WILD-TYPE" 
                    TCGA-F1-6874                     TCGA-F1-6875 
"AMP PEAK 20(13Q22.1) WILD-TYPE"   "AMP PEAK 20(13Q22.1) MUTATED" 
                    TCGA-FP-7735                     TCGA-FP-7829 
"AMP PEAK 20(13Q22.1) WILD-TYPE"   "AMP PEAK 20(13Q22.1) MUTATED" 
                    TCGA-FP-7916                     TCGA-FP-7998 
"AMP PEAK 20(13Q22.1) WILD-TYPE" "AMP PEAK 20(13Q22.1) WILD-TYPE" 
                    TCGA-HJ-7597                     TCGA-IN-7806 
"AMP PEAK 20(13Q22.1) WILD-TYPE" "AMP PEAK 20(13Q22.1) WILD-TYPE" 
                    TCGA-IN-7808                     TCGA-IP-7968 
"AMP PEAK 20(13Q22.1) WILD-TYPE"   "AMP PEAK 20(13Q22.1) MUTATED" 
                    TCGA-B7-5816                     TCGA-B7-5818 
"AMP PEAK 20(13Q22.1) WILD-TYPE"   "AMP PEAK 20(13Q22.1) MUTATED" 
                    TCGA-BR-6452                     TCGA-BR-6455 
"AMP PEAK 20(13Q22.1) WILD-TYPE" "AMP PEAK 20(13Q22.1) WILD-TYPE" 
                    TCGA-BR-6457                     TCGA-BR-6458 
"AMP PEAK 20(13Q22.1) WILD-TYPE" "AMP PEAK 20(13Q22.1) WILD-TYPE" 
                    TCGA-BR-6563                     TCGA-BR-6564 
  "AMP PEAK 20(13Q22.1) MUTATED" "AMP PEAK 20(13Q22.1) WILD-TYPE" 
                    TCGA-BR-6565                     TCGA-BR-6566 
  "AMP PEAK 20(13Q22.1) MUTATED"   "AMP PEAK 20(13Q22.1) MUTATED" 
                    TCGA-BR-6705                     TCGA-BR-6706 
"AMP PEAK 20(13Q22.1) WILD-TYPE" "AMP PEAK 20(13Q22.1) WILD-TYPE" 
                    TCGA-BR-6707                     TCGA-BR-6709 
  "AMP PEAK 20(13Q22.1) MUTATED" "AMP PEAK 20(13Q22.1) WILD-TYPE" 
                    TCGA-BR-6710                     TCGA-BR-6801 
"AMP PEAK 20(13Q22.1) WILD-TYPE"   "AMP PEAK 20(13Q22.1) MUTATED" 
                    TCGA-BR-6802                     TCGA-BR-6803 
"AMP PEAK 20(13Q22.1) WILD-TYPE" "AMP PEAK 20(13Q22.1) WILD-TYPE" 
                    TCGA-BR-6852                     TCGA-BR-7196 
"AMP PEAK 20(13Q22.1) WILD-TYPE" "AMP PEAK 20(13Q22.1) WILD-TYPE" 
                    TCGA-BR-7197                     TCGA-BR-7703 
  "AMP PEAK 20(13Q22.1) MUTATED" "AMP PEAK 20(13Q22.1) WILD-TYPE" 
                    TCGA-BR-7704                     TCGA-BR-7707 
  "AMP PEAK 20(13Q22.1) MUTATED" "AMP PEAK 20(13Q22.1) WILD-TYPE" 
                    TCGA-BR-7715                     TCGA-BR-7716 
  "AMP PEAK 20(13Q22.1) MUTATED"   "AMP PEAK 20(13Q22.1) MUTATED" 
                    TCGA-BR-7717                     TCGA-BR-7722 
  "AMP PEAK 20(13Q22.1) MUTATED" "AMP PEAK 20(13Q22.1) WILD-TYPE" 
                    TCGA-BR-7723                     TCGA-BR-7851 
  "AMP PEAK 20(13Q22.1) MUTATED" "AMP PEAK 20(13Q22.1) WILD-TYPE" 
                    TCGA-BR-7901                     TCGA-BR-7957 
  "AMP PEAK 20(13Q22.1) MUTATED" "AMP PEAK 20(13Q22.1) WILD-TYPE" 
                    TCGA-BR-7958                     TCGA-BR-7959 
"AMP PEAK 20(13Q22.1) WILD-TYPE" "AMP PEAK 20(13Q22.1) WILD-TYPE" 
                    TCGA-BR-8059                     TCGA-BR-8060 
"AMP PEAK 20(13Q22.1) WILD-TYPE" "AMP PEAK 20(13Q22.1) WILD-TYPE" 
                    TCGA-BR-8077                     TCGA-BR-8078 
"AMP PEAK 20(13Q22.1) WILD-TYPE" "AMP PEAK 20(13Q22.1) WILD-TYPE" 
                    TCGA-BR-8080                     TCGA-BR-8081 
"AMP PEAK 20(13Q22.1) WILD-TYPE" "AMP PEAK 20(13Q22.1) WILD-TYPE" 
                    TCGA-BR-8284                     TCGA-BR-8285 
"AMP PEAK 20(13Q22.1) WILD-TYPE" "AMP PEAK 20(13Q22.1) WILD-TYPE" 
                    TCGA-BR-8286                     TCGA-BR-8289 
"AMP PEAK 20(13Q22.1) WILD-TYPE" "AMP PEAK 20(13Q22.1) WILD-TYPE" 
                    TCGA-BR-8291                     TCGA-BR-8295 
"AMP PEAK 20(13Q22.1) WILD-TYPE" "AMP PEAK 20(13Q22.1) WILD-TYPE" 
                    TCGA-BR-8296                     TCGA-BR-8297 
"AMP PEAK 20(13Q22.1) WILD-TYPE" "AMP PEAK 20(13Q22.1) WILD-TYPE" 
                    TCGA-CD-5798                     TCGA-CD-5799 
"AMP PEAK 20(13Q22.1) WILD-TYPE"   "AMP PEAK 20(13Q22.1) MUTATED" 
                    TCGA-CD-5800                     TCGA-CD-5801 
  "AMP PEAK 20(13Q22.1) MUTATED" "AMP PEAK 20(13Q22.1) WILD-TYPE" 
                    TCGA-CD-5802                     TCGA-CD-5803 
  "AMP PEAK 20(13Q22.1) MUTATED" "AMP PEAK 20(13Q22.1) WILD-TYPE" 
                    TCGA-CG-4300                     TCGA-CG-4301 
  "AMP PEAK 20(13Q22.1) MUTATED" "AMP PEAK 20(13Q22.1) WILD-TYPE" 
                    TCGA-CG-4304                     TCGA-CG-4305 
"AMP PEAK 20(13Q22.1) WILD-TYPE"   "AMP PEAK 20(13Q22.1) MUTATED" 
                    TCGA-CG-4306                     TCGA-CG-4436 
  "AMP PEAK 20(13Q22.1) MUTATED"   "AMP PEAK 20(13Q22.1) MUTATED" 
                    TCGA-CG-4437                     TCGA-CG-4438 
"AMP PEAK 20(13Q22.1) WILD-TYPE"   "AMP PEAK 20(13Q22.1) MUTATED" 
                    TCGA-CG-4440                     TCGA-CG-4441 
  "AMP PEAK 20(13Q22.1) MUTATED" "AMP PEAK 20(13Q22.1) WILD-TYPE" 
                    TCGA-CG-4443                     TCGA-CG-4444 
  "AMP PEAK 20(13Q22.1) MUTATED" "AMP PEAK 20(13Q22.1) WILD-TYPE" 
                    TCGA-CG-4449                     TCGA-CG-4455 
"AMP PEAK 20(13Q22.1) WILD-TYPE" "AMP PEAK 20(13Q22.1) WILD-TYPE" 
                    TCGA-CG-4460                     TCGA-CG-4462 
"AMP PEAK 20(13Q22.1) WILD-TYPE" "AMP PEAK 20(13Q22.1) WILD-TYPE" 
                    TCGA-CG-4465                     TCGA-CG-4466 
"AMP PEAK 20(13Q22.1) WILD-TYPE" "AMP PEAK 20(13Q22.1) WILD-TYPE" 
                    TCGA-CG-4469                     TCGA-CG-4472 
  "AMP PEAK 20(13Q22.1) MUTATED"   "AMP PEAK 20(13Q22.1) MUTATED" 
                    TCGA-CG-4474                     TCGA-CG-4477 
  "AMP PEAK 20(13Q22.1) MUTATED" "AMP PEAK 20(13Q22.1) WILD-TYPE" 
                    TCGA-CG-5716                     TCGA-CG-5717 
"AMP PEAK 20(13Q22.1) WILD-TYPE" "AMP PEAK 20(13Q22.1) WILD-TYPE" 
                    TCGA-CG-5718                     TCGA-CG-5719 
  "AMP PEAK 20(13Q22.1) MUTATED"   "AMP PEAK 20(13Q22.1) MUTATED" 
                    TCGA-CG-5720                     TCGA-CG-5721 
"AMP PEAK 20(13Q22.1) WILD-TYPE"   "AMP PEAK 20(13Q22.1) MUTATED" 
                    TCGA-CG-5722                     TCGA-CG-5723 
"AMP PEAK 20(13Q22.1) WILD-TYPE"   "AMP PEAK 20(13Q22.1) MUTATED" 
                    TCGA-CG-5724                     TCGA-CG-5725 
"AMP PEAK 20(13Q22.1) WILD-TYPE"   "AMP PEAK 20(13Q22.1) MUTATED" 
                    TCGA-CG-5726                     TCGA-CG-5727 
"AMP PEAK 20(13Q22.1) WILD-TYPE" "AMP PEAK 20(13Q22.1) WILD-TYPE" 
                    TCGA-CG-5728                     TCGA-CG-5730 
"AMP PEAK 20(13Q22.1) WILD-TYPE"   "AMP PEAK 20(13Q22.1) MUTATED" 
                    TCGA-CG-5732                     TCGA-CG-5733 
  "AMP PEAK 20(13Q22.1) MUTATED" "AMP PEAK 20(13Q22.1) WILD-TYPE" 
                    TCGA-CG-5734                     TCGA-D7-5577 
  "AMP PEAK 20(13Q22.1) MUTATED"   "AMP PEAK 20(13Q22.1) MUTATED" 
                    TCGA-D7-5578                     TCGA-D7-5579 
  "AMP PEAK 20(13Q22.1) MUTATED"   "AMP PEAK 20(13Q22.1) MUTATED" 
                    TCGA-D7-6518                     TCGA-D7-6519 
  "AMP PEAK 20(13Q22.1) MUTATED" "AMP PEAK 20(13Q22.1) WILD-TYPE" 
                    TCGA-D7-6520                     TCGA-D7-6521 
"AMP PEAK 20(13Q22.1) WILD-TYPE"   "AMP PEAK 20(13Q22.1) MUTATED" 
                    TCGA-D7-6522                     TCGA-D7-6524 
"AMP PEAK 20(13Q22.1) WILD-TYPE"   "AMP PEAK 20(13Q22.1) MUTATED" 
                    TCGA-D7-6525                     TCGA-D7-6526 
"AMP PEAK 20(13Q22.1) WILD-TYPE"   "AMP PEAK 20(13Q22.1) MUTATED" 
                    TCGA-D7-6527                     TCGA-D7-6528 
  "AMP PEAK 20(13Q22.1) MUTATED" "AMP PEAK 20(13Q22.1) WILD-TYPE" 
                    TCGA-D7-6815                     TCGA-D7-6817 
  "AMP PEAK 20(13Q22.1) MUTATED" "AMP PEAK 20(13Q22.1) WILD-TYPE" 
                    TCGA-D7-6818                     TCGA-D7-6820 
  "AMP PEAK 20(13Q22.1) MUTATED"   "AMP PEAK 20(13Q22.1) MUTATED" 
                    TCGA-D7-6822                     TCGA-EQ-5647 
  "AMP PEAK 20(13Q22.1) MUTATED"   "AMP PEAK 20(13Q22.1) MUTATED" 
                    TCGA-EQ-8122                     TCGA-F1-6177 
"AMP PEAK 20(13Q22.1) WILD-TYPE" "AMP PEAK 20(13Q22.1) WILD-TYPE" 
                    TCGA-F1-6874                     TCGA-F1-6875 
"AMP PEAK 20(13Q22.1) WILD-TYPE"   "AMP PEAK 20(13Q22.1) MUTATED" 
                    TCGA-FP-7735                     TCGA-FP-7829 
"AMP PEAK 20(13Q22.1) WILD-TYPE"   "AMP PEAK 20(13Q22.1) MUTATED" 
                    TCGA-FP-7916                     TCGA-FP-7998 
"AMP PEAK 20(13Q22.1) WILD-TYPE" "AMP PEAK 20(13Q22.1) WILD-TYPE" 
                    TCGA-HJ-7597                     TCGA-IN-7806 
"AMP PEAK 20(13Q22.1) WILD-TYPE" "AMP PEAK 20(13Q22.1) WILD-TYPE" 
                    TCGA-IN-7808                     TCGA-IP-7968 
"AMP PEAK 20(13Q22.1) WILD-TYPE"   "AMP PEAK 20(13Q22.1) MUTATED" 
[1] "hr=" "1.2"
D20V2, continuous
D20V3, binary
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  AMP PEAK 20(13Q22.1) MUTATED     19   46
  AMP PEAK 20(13Q22.1) WILD-TYPE   46   50
        clus
vv       AMP PEAK 20(13Q22.1) MUTATED AMP PEAK 20(13Q22.1) WILD-TYPE
  FEMALE                           19                             46
  MALE                             46                             50
D20V4, multiclass
D20V5, multiclass
    clus
vv   AMP PEAK 20(13Q22.1) MUTATED AMP PEAK 20(13Q22.1) WILD-TYPE
  T1                            2                              4
  T2                           23                             30
  T3                           22                             37
  T4                           10                             23
D20V6, multiclass
    clus
vv   AMP PEAK 20(13Q22.1) MUTATED AMP PEAK 20(13Q22.1) WILD-TYPE
  N0                           17                             33
  N1                           23                             34
  N2                           11                             13
  N3                            8                             11
D20V7, multiclass
    clus
vv   AMP PEAK 20(13Q22.1) MUTATED AMP PEAK 20(13Q22.1) WILD-TYPE
  M0                           57                             75
  M1                            6                             12
  MX                            2                              9
D20V8, multiclass
     clus
vv    AMP PEAK 20(13Q22.1) MUTATED AMP PEAK 20(13Q22.1) WILD-TYPE
  I                              7                             18
  II                            20                             23
  III                           13                             35
  IV                            15                             14
D20V9, binary
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  AMP PEAK 20(13Q22.1) MUTATED     63    2
  AMP PEAK 20(13Q22.1) WILD-TYPE   93    3
     clus
vv    AMP PEAK 20(13Q22.1) MUTATED AMP PEAK 20(13Q22.1) WILD-TYPE
  NO                             2                              3
  YES                           63                             93

Clustering(21) Variable = Amp Peak 21(15q26.1) mutation analysis
D21V1, survival
                    TCGA-B7-5816                     TCGA-B7-5818 
"AMP PEAK 21(15Q26.1) WILD-TYPE" "AMP PEAK 21(15Q26.1) WILD-TYPE" 
                    TCGA-BR-6452                     TCGA-BR-6455 
"AMP PEAK 21(15Q26.1) WILD-TYPE" "AMP PEAK 21(15Q26.1) WILD-TYPE" 
                    TCGA-BR-6457                     TCGA-BR-6458 
"AMP PEAK 21(15Q26.1) WILD-TYPE"   "AMP PEAK 21(15Q26.1) MUTATED" 
                    TCGA-BR-6563                     TCGA-BR-6564 
"AMP PEAK 21(15Q26.1) WILD-TYPE" "AMP PEAK 21(15Q26.1) WILD-TYPE" 
                    TCGA-BR-6565                     TCGA-BR-6566 
"AMP PEAK 21(15Q26.1) WILD-TYPE" "AMP PEAK 21(15Q26.1) WILD-TYPE" 
                    TCGA-BR-6705                     TCGA-BR-6706 
"AMP PEAK 21(15Q26.1) WILD-TYPE" "AMP PEAK 21(15Q26.1) WILD-TYPE" 
                    TCGA-BR-6707                     TCGA-BR-6709 
"AMP PEAK 21(15Q26.1) WILD-TYPE"   "AMP PEAK 21(15Q26.1) MUTATED" 
                    TCGA-BR-6710                     TCGA-BR-6801 
"AMP PEAK 21(15Q26.1) WILD-TYPE" "AMP PEAK 21(15Q26.1) WILD-TYPE" 
                    TCGA-BR-6802                     TCGA-BR-6803 
"AMP PEAK 21(15Q26.1) WILD-TYPE" "AMP PEAK 21(15Q26.1) WILD-TYPE" 
                    TCGA-BR-6852                     TCGA-BR-7196 
"AMP PEAK 21(15Q26.1) WILD-TYPE" "AMP PEAK 21(15Q26.1) WILD-TYPE" 
                    TCGA-BR-7197                     TCGA-BR-7703 
  "AMP PEAK 21(15Q26.1) MUTATED" "AMP PEAK 21(15Q26.1) WILD-TYPE" 
                    TCGA-BR-7704                     TCGA-BR-7707 
"AMP PEAK 21(15Q26.1) WILD-TYPE" "AMP PEAK 21(15Q26.1) WILD-TYPE" 
                    TCGA-BR-7715                     TCGA-BR-7716 
  "AMP PEAK 21(15Q26.1) MUTATED" "AMP PEAK 21(15Q26.1) WILD-TYPE" 
                    TCGA-BR-7717                     TCGA-BR-7722 
  "AMP PEAK 21(15Q26.1) MUTATED" "AMP PEAK 21(15Q26.1) WILD-TYPE" 
                    TCGA-BR-7723                     TCGA-BR-7851 
"AMP PEAK 21(15Q26.1) WILD-TYPE" "AMP PEAK 21(15Q26.1) WILD-TYPE" 
                    TCGA-BR-7901                     TCGA-BR-7957 
"AMP PEAK 21(15Q26.1) WILD-TYPE" "AMP PEAK 21(15Q26.1) WILD-TYPE" 
                    TCGA-BR-7958                     TCGA-BR-7959 
"AMP PEAK 21(15Q26.1) WILD-TYPE" "AMP PEAK 21(15Q26.1) WILD-TYPE" 
                    TCGA-BR-8059                     TCGA-BR-8060 
"AMP PEAK 21(15Q26.1) WILD-TYPE" "AMP PEAK 21(15Q26.1) WILD-TYPE" 
                    TCGA-BR-8077                     TCGA-BR-8078 
"AMP PEAK 21(15Q26.1) WILD-TYPE" "AMP PEAK 21(15Q26.1) WILD-TYPE" 
                    TCGA-BR-8080                     TCGA-BR-8081 
"AMP PEAK 21(15Q26.1) WILD-TYPE" "AMP PEAK 21(15Q26.1) WILD-TYPE" 
                    TCGA-BR-8284                     TCGA-BR-8285 
"AMP PEAK 21(15Q26.1) WILD-TYPE" "AMP PEAK 21(15Q26.1) WILD-TYPE" 
                    TCGA-BR-8286                     TCGA-BR-8289 
"AMP PEAK 21(15Q26.1) WILD-TYPE" "AMP PEAK 21(15Q26.1) WILD-TYPE" 
                    TCGA-BR-8291                     TCGA-BR-8295 
"AMP PEAK 21(15Q26.1) WILD-TYPE" "AMP PEAK 21(15Q26.1) WILD-TYPE" 
                    TCGA-BR-8296                     TCGA-BR-8297 
"AMP PEAK 21(15Q26.1) WILD-TYPE" "AMP PEAK 21(15Q26.1) WILD-TYPE" 
                    TCGA-CD-5798                     TCGA-CD-5799 
"AMP PEAK 21(15Q26.1) WILD-TYPE"   "AMP PEAK 21(15Q26.1) MUTATED" 
                    TCGA-CD-5800                     TCGA-CD-5801 
  "AMP PEAK 21(15Q26.1) MUTATED" "AMP PEAK 21(15Q26.1) WILD-TYPE" 
                    TCGA-CD-5802                     TCGA-CD-5803 
"AMP PEAK 21(15Q26.1) WILD-TYPE" "AMP PEAK 21(15Q26.1) WILD-TYPE" 
                    TCGA-CG-4300                     TCGA-CG-4301 
"AMP PEAK 21(15Q26.1) WILD-TYPE" "AMP PEAK 21(15Q26.1) WILD-TYPE" 
                    TCGA-CG-4304                     TCGA-CG-4305 
"AMP PEAK 21(15Q26.1) WILD-TYPE" "AMP PEAK 21(15Q26.1) WILD-TYPE" 
                    TCGA-CG-4306                     TCGA-CG-4436 
"AMP PEAK 21(15Q26.1) WILD-TYPE" "AMP PEAK 21(15Q26.1) WILD-TYPE" 
                    TCGA-CG-4437                     TCGA-CG-4438 
"AMP PEAK 21(15Q26.1) WILD-TYPE" "AMP PEAK 21(15Q26.1) WILD-TYPE" 
                    TCGA-CG-4440                     TCGA-CG-4441 
"AMP PEAK 21(15Q26.1) WILD-TYPE" "AMP PEAK 21(15Q26.1) WILD-TYPE" 
                    TCGA-CG-4443                     TCGA-CG-4444 
"AMP PEAK 21(15Q26.1) WILD-TYPE"   "AMP PEAK 21(15Q26.1) MUTATED" 
                    TCGA-CG-4449                     TCGA-CG-4455 
  "AMP PEAK 21(15Q26.1) MUTATED" "AMP PEAK 21(15Q26.1) WILD-TYPE" 
                    TCGA-CG-4460                     TCGA-CG-4462 
"AMP PEAK 21(15Q26.1) WILD-TYPE" "AMP PEAK 21(15Q26.1) WILD-TYPE" 
                    TCGA-CG-4465                     TCGA-CG-4466 
"AMP PEAK 21(15Q26.1) WILD-TYPE" "AMP PEAK 21(15Q26.1) WILD-TYPE" 
                    TCGA-CG-4469                     TCGA-CG-4472 
"AMP PEAK 21(15Q26.1) WILD-TYPE" "AMP PEAK 21(15Q26.1) WILD-TYPE" 
                    TCGA-CG-4474                     TCGA-CG-4477 
  "AMP PEAK 21(15Q26.1) MUTATED" "AMP PEAK 21(15Q26.1) WILD-TYPE" 
                    TCGA-CG-5716                     TCGA-CG-5717 
"AMP PEAK 21(15Q26.1) WILD-TYPE"   "AMP PEAK 21(15Q26.1) MUTATED" 
                    TCGA-CG-5718                     TCGA-CG-5719 
"AMP PEAK 21(15Q26.1) WILD-TYPE"   "AMP PEAK 21(15Q26.1) MUTATED" 
                    TCGA-CG-5720                     TCGA-CG-5721 
"AMP PEAK 21(15Q26.1) WILD-TYPE" "AMP PEAK 21(15Q26.1) WILD-TYPE" 
                    TCGA-CG-5722                     TCGA-CG-5723 
"AMP PEAK 21(15Q26.1) WILD-TYPE" "AMP PEAK 21(15Q26.1) WILD-TYPE" 
                    TCGA-CG-5724                     TCGA-CG-5725 
  "AMP PEAK 21(15Q26.1) MUTATED" "AMP PEAK 21(15Q26.1) WILD-TYPE" 
                    TCGA-CG-5726                     TCGA-CG-5727 
"AMP PEAK 21(15Q26.1) WILD-TYPE"   "AMP PEAK 21(15Q26.1) MUTATED" 
                    TCGA-CG-5728                     TCGA-CG-5730 
"AMP PEAK 21(15Q26.1) WILD-TYPE"   "AMP PEAK 21(15Q26.1) MUTATED" 
                    TCGA-CG-5732                     TCGA-CG-5733 
  "AMP PEAK 21(15Q26.1) MUTATED" "AMP PEAK 21(15Q26.1) WILD-TYPE" 
                    TCGA-CG-5734                     TCGA-D7-5577 
  "AMP PEAK 21(15Q26.1) MUTATED" "AMP PEAK 21(15Q26.1) WILD-TYPE" 
                    TCGA-D7-5578                     TCGA-D7-5579 
"AMP PEAK 21(15Q26.1) WILD-TYPE"   "AMP PEAK 21(15Q26.1) MUTATED" 
                    TCGA-D7-6518                     TCGA-D7-6519 
"AMP PEAK 21(15Q26.1) WILD-TYPE"   "AMP PEAK 21(15Q26.1) MUTATED" 
                    TCGA-D7-6520                     TCGA-D7-6521 
  "AMP PEAK 21(15Q26.1) MUTATED" "AMP PEAK 21(15Q26.1) WILD-TYPE" 
                    TCGA-D7-6522                     TCGA-D7-6524 
"AMP PEAK 21(15Q26.1) WILD-TYPE" "AMP PEAK 21(15Q26.1) WILD-TYPE" 
                    TCGA-D7-6525                     TCGA-D7-6526 
  "AMP PEAK 21(15Q26.1) MUTATED" "AMP PEAK 21(15Q26.1) WILD-TYPE" 
                    TCGA-D7-6527                     TCGA-D7-6528 
"AMP PEAK 21(15Q26.1) WILD-TYPE"   "AMP PEAK 21(15Q26.1) MUTATED" 
                    TCGA-D7-6815                     TCGA-D7-6817 
  "AMP PEAK 21(15Q26.1) MUTATED" "AMP PEAK 21(15Q26.1) WILD-TYPE" 
                    TCGA-D7-6818                     TCGA-D7-6820 
  "AMP PEAK 21(15Q26.1) MUTATED" "AMP PEAK 21(15Q26.1) WILD-TYPE" 
                    TCGA-D7-6822                     TCGA-EQ-5647 
  "AMP PEAK 21(15Q26.1) MUTATED"   "AMP PEAK 21(15Q26.1) MUTATED" 
                    TCGA-EQ-8122                     TCGA-F1-6177 
  "AMP PEAK 21(15Q26.1) MUTATED" "AMP PEAK 21(15Q26.1) WILD-TYPE" 
                    TCGA-F1-6874                     TCGA-F1-6875 
"AMP PEAK 21(15Q26.1) WILD-TYPE"   "AMP PEAK 21(15Q26.1) MUTATED" 
                    TCGA-FP-7735                     TCGA-FP-7829 
"AMP PEAK 21(15Q26.1) WILD-TYPE"   "AMP PEAK 21(15Q26.1) MUTATED" 
                    TCGA-FP-7916                     TCGA-FP-7998 
"AMP PEAK 21(15Q26.1) WILD-TYPE" "AMP PEAK 21(15Q26.1) WILD-TYPE" 
                    TCGA-HJ-7597                     TCGA-IN-7806 
"AMP PEAK 21(15Q26.1) WILD-TYPE" "AMP PEAK 21(15Q26.1) WILD-TYPE" 
                    TCGA-IN-7808                     TCGA-IP-7968 
  "AMP PEAK 21(15Q26.1) MUTATED"   "AMP PEAK 21(15Q26.1) MUTATED" 
                    TCGA-B7-5816                     TCGA-B7-5818 
"AMP PEAK 21(15Q26.1) WILD-TYPE" "AMP PEAK 21(15Q26.1) WILD-TYPE" 
                    TCGA-BR-6452                     TCGA-BR-6455 
"AMP PEAK 21(15Q26.1) WILD-TYPE" "AMP PEAK 21(15Q26.1) WILD-TYPE" 
                    TCGA-BR-6457                     TCGA-BR-6458 
"AMP PEAK 21(15Q26.1) WILD-TYPE"   "AMP PEAK 21(15Q26.1) MUTATED" 
                    TCGA-BR-6563                     TCGA-BR-6564 
"AMP PEAK 21(15Q26.1) WILD-TYPE" "AMP PEAK 21(15Q26.1) WILD-TYPE" 
                    TCGA-BR-6565                     TCGA-BR-6566 
"AMP PEAK 21(15Q26.1) WILD-TYPE" "AMP PEAK 21(15Q26.1) WILD-TYPE" 
                    TCGA-BR-6705                     TCGA-BR-6706 
"AMP PEAK 21(15Q26.1) WILD-TYPE" "AMP PEAK 21(15Q26.1) WILD-TYPE" 
                    TCGA-BR-6707                     TCGA-BR-6709 
"AMP PEAK 21(15Q26.1) WILD-TYPE"   "AMP PEAK 21(15Q26.1) MUTATED" 
                    TCGA-BR-6710                     TCGA-BR-6801 
"AMP PEAK 21(15Q26.1) WILD-TYPE" "AMP PEAK 21(15Q26.1) WILD-TYPE" 
                    TCGA-BR-6802                     TCGA-BR-6803 
"AMP PEAK 21(15Q26.1) WILD-TYPE" "AMP PEAK 21(15Q26.1) WILD-TYPE" 
                    TCGA-BR-6852                     TCGA-BR-7196 
"AMP PEAK 21(15Q26.1) WILD-TYPE" "AMP PEAK 21(15Q26.1) WILD-TYPE" 
                    TCGA-BR-7197                     TCGA-BR-7703 
  "AMP PEAK 21(15Q26.1) MUTATED" "AMP PEAK 21(15Q26.1) WILD-TYPE" 
                    TCGA-BR-7704                     TCGA-BR-7707 
"AMP PEAK 21(15Q26.1) WILD-TYPE" "AMP PEAK 21(15Q26.1) WILD-TYPE" 
                    TCGA-BR-7715                     TCGA-BR-7716 
  "AMP PEAK 21(15Q26.1) MUTATED" "AMP PEAK 21(15Q26.1) WILD-TYPE" 
                    TCGA-BR-7717                     TCGA-BR-7722 
  "AMP PEAK 21(15Q26.1) MUTATED" "AMP PEAK 21(15Q26.1) WILD-TYPE" 
                    TCGA-BR-7723                     TCGA-BR-7851 
"AMP PEAK 21(15Q26.1) WILD-TYPE" "AMP PEAK 21(15Q26.1) WILD-TYPE" 
                    TCGA-BR-7901                     TCGA-BR-7957 
"AMP PEAK 21(15Q26.1) WILD-TYPE" "AMP PEAK 21(15Q26.1) WILD-TYPE" 
                    TCGA-BR-7958                     TCGA-BR-7959 
"AMP PEAK 21(15Q26.1) WILD-TYPE" "AMP PEAK 21(15Q26.1) WILD-TYPE" 
                    TCGA-BR-8059                     TCGA-BR-8060 
"AMP PEAK 21(15Q26.1) WILD-TYPE" "AMP PEAK 21(15Q26.1) WILD-TYPE" 
                    TCGA-BR-8077                     TCGA-BR-8078 
"AMP PEAK 21(15Q26.1) WILD-TYPE" "AMP PEAK 21(15Q26.1) WILD-TYPE" 
                    TCGA-BR-8080                     TCGA-BR-8081 
"AMP PEAK 21(15Q26.1) WILD-TYPE" "AMP PEAK 21(15Q26.1) WILD-TYPE" 
                    TCGA-BR-8284                     TCGA-BR-8285 
"AMP PEAK 21(15Q26.1) WILD-TYPE" "AMP PEAK 21(15Q26.1) WILD-TYPE" 
                    TCGA-BR-8286                     TCGA-BR-8289 
"AMP PEAK 21(15Q26.1) WILD-TYPE" "AMP PEAK 21(15Q26.1) WILD-TYPE" 
                    TCGA-BR-8291                     TCGA-BR-8295 
"AMP PEAK 21(15Q26.1) WILD-TYPE" "AMP PEAK 21(15Q26.1) WILD-TYPE" 
                    TCGA-BR-8296                     TCGA-BR-8297 
"AMP PEAK 21(15Q26.1) WILD-TYPE" "AMP PEAK 21(15Q26.1) WILD-TYPE" 
                    TCGA-CD-5798                     TCGA-CD-5799 
"AMP PEAK 21(15Q26.1) WILD-TYPE"   "AMP PEAK 21(15Q26.1) MUTATED" 
                    TCGA-CD-5800                     TCGA-CD-5801 
  "AMP PEAK 21(15Q26.1) MUTATED" "AMP PEAK 21(15Q26.1) WILD-TYPE" 
                    TCGA-CD-5802                     TCGA-CD-5803 
"AMP PEAK 21(15Q26.1) WILD-TYPE" "AMP PEAK 21(15Q26.1) WILD-TYPE" 
                    TCGA-CG-4300                     TCGA-CG-4301 
"AMP PEAK 21(15Q26.1) WILD-TYPE" "AMP PEAK 21(15Q26.1) WILD-TYPE" 
                    TCGA-CG-4304                     TCGA-CG-4305 
"AMP PEAK 21(15Q26.1) WILD-TYPE" "AMP PEAK 21(15Q26.1) WILD-TYPE" 
                    TCGA-CG-4306                     TCGA-CG-4436 
"AMP PEAK 21(15Q26.1) WILD-TYPE" "AMP PEAK 21(15Q26.1) WILD-TYPE" 
                    TCGA-CG-4437                     TCGA-CG-4438 
"AMP PEAK 21(15Q26.1) WILD-TYPE" "AMP PEAK 21(15Q26.1) WILD-TYPE" 
                    TCGA-CG-4440                     TCGA-CG-4441 
"AMP PEAK 21(15Q26.1) WILD-TYPE" "AMP PEAK 21(15Q26.1) WILD-TYPE" 
                    TCGA-CG-4443                     TCGA-CG-4444 
"AMP PEAK 21(15Q26.1) WILD-TYPE"   "AMP PEAK 21(15Q26.1) MUTATED" 
                    TCGA-CG-4449                     TCGA-CG-4455 
  "AMP PEAK 21(15Q26.1) MUTATED" "AMP PEAK 21(15Q26.1) WILD-TYPE" 
                    TCGA-CG-4460                     TCGA-CG-4462 
"AMP PEAK 21(15Q26.1) WILD-TYPE" "AMP PEAK 21(15Q26.1) WILD-TYPE" 
                    TCGA-CG-4465                     TCGA-CG-4466 
"AMP PEAK 21(15Q26.1) WILD-TYPE" "AMP PEAK 21(15Q26.1) WILD-TYPE" 
                    TCGA-CG-4469                     TCGA-CG-4472 
"AMP PEAK 21(15Q26.1) WILD-TYPE" "AMP PEAK 21(15Q26.1) WILD-TYPE" 
                    TCGA-CG-4474                     TCGA-CG-4477 
  "AMP PEAK 21(15Q26.1) MUTATED" "AMP PEAK 21(15Q26.1) WILD-TYPE" 
                    TCGA-CG-5716                     TCGA-CG-5717 
"AMP PEAK 21(15Q26.1) WILD-TYPE"   "AMP PEAK 21(15Q26.1) MUTATED" 
                    TCGA-CG-5718                     TCGA-CG-5719 
"AMP PEAK 21(15Q26.1) WILD-TYPE"   "AMP PEAK 21(15Q26.1) MUTATED" 
                    TCGA-CG-5720                     TCGA-CG-5721 
"AMP PEAK 21(15Q26.1) WILD-TYPE" "AMP PEAK 21(15Q26.1) WILD-TYPE" 
                    TCGA-CG-5722                     TCGA-CG-5723 
"AMP PEAK 21(15Q26.1) WILD-TYPE" "AMP PEAK 21(15Q26.1) WILD-TYPE" 
                    TCGA-CG-5724                     TCGA-CG-5725 
  "AMP PEAK 21(15Q26.1) MUTATED" "AMP PEAK 21(15Q26.1) WILD-TYPE" 
                    TCGA-CG-5726                     TCGA-CG-5727 
"AMP PEAK 21(15Q26.1) WILD-TYPE"   "AMP PEAK 21(15Q26.1) MUTATED" 
                    TCGA-CG-5728                     TCGA-CG-5730 
"AMP PEAK 21(15Q26.1) WILD-TYPE"   "AMP PEAK 21(15Q26.1) MUTATED" 
                    TCGA-CG-5732                     TCGA-CG-5733 
  "AMP PEAK 21(15Q26.1) MUTATED" "AMP PEAK 21(15Q26.1) WILD-TYPE" 
                    TCGA-CG-5734                     TCGA-D7-5577 
  "AMP PEAK 21(15Q26.1) MUTATED" "AMP PEAK 21(15Q26.1) WILD-TYPE" 
                    TCGA-D7-5578                     TCGA-D7-5579 
"AMP PEAK 21(15Q26.1) WILD-TYPE"   "AMP PEAK 21(15Q26.1) MUTATED" 
                    TCGA-D7-6518                     TCGA-D7-6519 
"AMP PEAK 21(15Q26.1) WILD-TYPE"   "AMP PEAK 21(15Q26.1) MUTATED" 
                    TCGA-D7-6520                     TCGA-D7-6521 
  "AMP PEAK 21(15Q26.1) MUTATED" "AMP PEAK 21(15Q26.1) WILD-TYPE" 
                    TCGA-D7-6522                     TCGA-D7-6524 
"AMP PEAK 21(15Q26.1) WILD-TYPE" "AMP PEAK 21(15Q26.1) WILD-TYPE" 
                    TCGA-D7-6525                     TCGA-D7-6526 
  "AMP PEAK 21(15Q26.1) MUTATED" "AMP PEAK 21(15Q26.1) WILD-TYPE" 
                    TCGA-D7-6527                     TCGA-D7-6528 
"AMP PEAK 21(15Q26.1) WILD-TYPE"   "AMP PEAK 21(15Q26.1) MUTATED" 
                    TCGA-D7-6815                     TCGA-D7-6817 
  "AMP PEAK 21(15Q26.1) MUTATED" "AMP PEAK 21(15Q26.1) WILD-TYPE" 
                    TCGA-D7-6818                     TCGA-D7-6820 
  "AMP PEAK 21(15Q26.1) MUTATED" "AMP PEAK 21(15Q26.1) WILD-TYPE" 
                    TCGA-D7-6822                     TCGA-EQ-5647 
  "AMP PEAK 21(15Q26.1) MUTATED"   "AMP PEAK 21(15Q26.1) MUTATED" 
                    TCGA-EQ-8122                     TCGA-F1-6177 
  "AMP PEAK 21(15Q26.1) MUTATED" "AMP PEAK 21(15Q26.1) WILD-TYPE" 
                    TCGA-F1-6874                     TCGA-F1-6875 
"AMP PEAK 21(15Q26.1) WILD-TYPE"   "AMP PEAK 21(15Q26.1) MUTATED" 
                    TCGA-FP-7735                     TCGA-FP-7829 
"AMP PEAK 21(15Q26.1) WILD-TYPE"   "AMP PEAK 21(15Q26.1) MUTATED" 
                    TCGA-FP-7916                     TCGA-FP-7998 
"AMP PEAK 21(15Q26.1) WILD-TYPE" "AMP PEAK 21(15Q26.1) WILD-TYPE" 
                    TCGA-HJ-7597                     TCGA-IN-7806 
"AMP PEAK 21(15Q26.1) WILD-TYPE" "AMP PEAK 21(15Q26.1) WILD-TYPE" 
                    TCGA-IN-7808                     TCGA-IP-7968 
  "AMP PEAK 21(15Q26.1) MUTATED"   "AMP PEAK 21(15Q26.1) MUTATED" 
                    TCGA-B7-5816                     TCGA-B7-5818 
"AMP PEAK 21(15Q26.1) WILD-TYPE" "AMP PEAK 21(15Q26.1) WILD-TYPE" 
                    TCGA-BR-6452                     TCGA-BR-6455 
"AMP PEAK 21(15Q26.1) WILD-TYPE" "AMP PEAK 21(15Q26.1) WILD-TYPE" 
                    TCGA-BR-6457                     TCGA-BR-6458 
"AMP PEAK 21(15Q26.1) WILD-TYPE"   "AMP PEAK 21(15Q26.1) MUTATED" 
                    TCGA-BR-6563                     TCGA-BR-6564 
"AMP PEAK 21(15Q26.1) WILD-TYPE" "AMP PEAK 21(15Q26.1) WILD-TYPE" 
                    TCGA-BR-6565                     TCGA-BR-6566 
"AMP PEAK 21(15Q26.1) WILD-TYPE" "AMP PEAK 21(15Q26.1) WILD-TYPE" 
                    TCGA-BR-6705                     TCGA-BR-6706 
"AMP PEAK 21(15Q26.1) WILD-TYPE" "AMP PEAK 21(15Q26.1) WILD-TYPE" 
                    TCGA-BR-6707                     TCGA-BR-6709 
"AMP PEAK 21(15Q26.1) WILD-TYPE"   "AMP PEAK 21(15Q26.1) MUTATED" 
                    TCGA-BR-6710                     TCGA-BR-6801 
"AMP PEAK 21(15Q26.1) WILD-TYPE" "AMP PEAK 21(15Q26.1) WILD-TYPE" 
                    TCGA-BR-6802                     TCGA-BR-6803 
"AMP PEAK 21(15Q26.1) WILD-TYPE" "AMP PEAK 21(15Q26.1) WILD-TYPE" 
                    TCGA-BR-6852                     TCGA-BR-7196 
"AMP PEAK 21(15Q26.1) WILD-TYPE" "AMP PEAK 21(15Q26.1) WILD-TYPE" 
                    TCGA-BR-7197                     TCGA-BR-7703 
  "AMP PEAK 21(15Q26.1) MUTATED" "AMP PEAK 21(15Q26.1) WILD-TYPE" 
                    TCGA-BR-7704                     TCGA-BR-7707 
"AMP PEAK 21(15Q26.1) WILD-TYPE" "AMP PEAK 21(15Q26.1) WILD-TYPE" 
                    TCGA-BR-7715                     TCGA-BR-7716 
  "AMP PEAK 21(15Q26.1) MUTATED" "AMP PEAK 21(15Q26.1) WILD-TYPE" 
                    TCGA-BR-7717                     TCGA-BR-7722 
  "AMP PEAK 21(15Q26.1) MUTATED" "AMP PEAK 21(15Q26.1) WILD-TYPE" 
                    TCGA-BR-7723                     TCGA-BR-7851 
"AMP PEAK 21(15Q26.1) WILD-TYPE" "AMP PEAK 21(15Q26.1) WILD-TYPE" 
                    TCGA-BR-7901                     TCGA-BR-7957 
"AMP PEAK 21(15Q26.1) WILD-TYPE" "AMP PEAK 21(15Q26.1) WILD-TYPE" 
                    TCGA-BR-7958                     TCGA-BR-7959 
"AMP PEAK 21(15Q26.1) WILD-TYPE" "AMP PEAK 21(15Q26.1) WILD-TYPE" 
                    TCGA-BR-8059                     TCGA-BR-8060 
"AMP PEAK 21(15Q26.1) WILD-TYPE" "AMP PEAK 21(15Q26.1) WILD-TYPE" 
                    TCGA-BR-8077                     TCGA-BR-8078 
"AMP PEAK 21(15Q26.1) WILD-TYPE" "AMP PEAK 21(15Q26.1) WILD-TYPE" 
                    TCGA-BR-8080                     TCGA-BR-8081 
"AMP PEAK 21(15Q26.1) WILD-TYPE" "AMP PEAK 21(15Q26.1) WILD-TYPE" 
                    TCGA-BR-8284                     TCGA-BR-8285 
"AMP PEAK 21(15Q26.1) WILD-TYPE" "AMP PEAK 21(15Q26.1) WILD-TYPE" 
                    TCGA-BR-8286                     TCGA-BR-8289 
"AMP PEAK 21(15Q26.1) WILD-TYPE" "AMP PEAK 21(15Q26.1) WILD-TYPE" 
                    TCGA-BR-8291                     TCGA-BR-8295 
"AMP PEAK 21(15Q26.1) WILD-TYPE" "AMP PEAK 21(15Q26.1) WILD-TYPE" 
                    TCGA-BR-8296                     TCGA-BR-8297 
"AMP PEAK 21(15Q26.1) WILD-TYPE" "AMP PEAK 21(15Q26.1) WILD-TYPE" 
                    TCGA-CD-5798                     TCGA-CD-5799 
"AMP PEAK 21(15Q26.1) WILD-TYPE"   "AMP PEAK 21(15Q26.1) MUTATED" 
                    TCGA-CD-5800                     TCGA-CD-5801 
  "AMP PEAK 21(15Q26.1) MUTATED" "AMP PEAK 21(15Q26.1) WILD-TYPE" 
                    TCGA-CD-5802                     TCGA-CD-5803 
"AMP PEAK 21(15Q26.1) WILD-TYPE" "AMP PEAK 21(15Q26.1) WILD-TYPE" 
                    TCGA-CG-4300                     TCGA-CG-4301 
"AMP PEAK 21(15Q26.1) WILD-TYPE" "AMP PEAK 21(15Q26.1) WILD-TYPE" 
                    TCGA-CG-4304                     TCGA-CG-4305 
"AMP PEAK 21(15Q26.1) WILD-TYPE" "AMP PEAK 21(15Q26.1) WILD-TYPE" 
                    TCGA-CG-4306                     TCGA-CG-4436 
"AMP PEAK 21(15Q26.1) WILD-TYPE" "AMP PEAK 21(15Q26.1) WILD-TYPE" 
                    TCGA-CG-4437                     TCGA-CG-4438 
"AMP PEAK 21(15Q26.1) WILD-TYPE" "AMP PEAK 21(15Q26.1) WILD-TYPE" 
                    TCGA-CG-4440                     TCGA-CG-4441 
"AMP PEAK 21(15Q26.1) WILD-TYPE" "AMP PEAK 21(15Q26.1) WILD-TYPE" 
                    TCGA-CG-4443                     TCGA-CG-4444 
"AMP PEAK 21(15Q26.1) WILD-TYPE"   "AMP PEAK 21(15Q26.1) MUTATED" 
                    TCGA-CG-4449                     TCGA-CG-4455 
  "AMP PEAK 21(15Q26.1) MUTATED" "AMP PEAK 21(15Q26.1) WILD-TYPE" 
                    TCGA-CG-4460                     TCGA-CG-4462 
"AMP PEAK 21(15Q26.1) WILD-TYPE" "AMP PEAK 21(15Q26.1) WILD-TYPE" 
                    TCGA-CG-4465                     TCGA-CG-4466 
"AMP PEAK 21(15Q26.1) WILD-TYPE" "AMP PEAK 21(15Q26.1) WILD-TYPE" 
                    TCGA-CG-4469                     TCGA-CG-4472 
"AMP PEAK 21(15Q26.1) WILD-TYPE" "AMP PEAK 21(15Q26.1) WILD-TYPE" 
                    TCGA-CG-4474                     TCGA-CG-4477 
  "AMP PEAK 21(15Q26.1) MUTATED" "AMP PEAK 21(15Q26.1) WILD-TYPE" 
                    TCGA-CG-5716                     TCGA-CG-5717 
"AMP PEAK 21(15Q26.1) WILD-TYPE"   "AMP PEAK 21(15Q26.1) MUTATED" 
                    TCGA-CG-5718                     TCGA-CG-5719 
"AMP PEAK 21(15Q26.1) WILD-TYPE"   "AMP PEAK 21(15Q26.1) MUTATED" 
                    TCGA-CG-5720                     TCGA-CG-5721 
"AMP PEAK 21(15Q26.1) WILD-TYPE" "AMP PEAK 21(15Q26.1) WILD-TYPE" 
                    TCGA-CG-5722                     TCGA-CG-5723 
"AMP PEAK 21(15Q26.1) WILD-TYPE" "AMP PEAK 21(15Q26.1) WILD-TYPE" 
                    TCGA-CG-5724                     TCGA-CG-5725 
  "AMP PEAK 21(15Q26.1) MUTATED" "AMP PEAK 21(15Q26.1) WILD-TYPE" 
                    TCGA-CG-5726                     TCGA-CG-5727 
"AMP PEAK 21(15Q26.1) WILD-TYPE"   "AMP PEAK 21(15Q26.1) MUTATED" 
                    TCGA-CG-5728                     TCGA-CG-5730 
"AMP PEAK 21(15Q26.1) WILD-TYPE"   "AMP PEAK 21(15Q26.1) MUTATED" 
                    TCGA-CG-5732                     TCGA-CG-5733 
  "AMP PEAK 21(15Q26.1) MUTATED" "AMP PEAK 21(15Q26.1) WILD-TYPE" 
                    TCGA-CG-5734                     TCGA-D7-5577 
  "AMP PEAK 21(15Q26.1) MUTATED" "AMP PEAK 21(15Q26.1) WILD-TYPE" 
                    TCGA-D7-5578                     TCGA-D7-5579 
"AMP PEAK 21(15Q26.1) WILD-TYPE"   "AMP PEAK 21(15Q26.1) MUTATED" 
                    TCGA-D7-6518                     TCGA-D7-6519 
"AMP PEAK 21(15Q26.1) WILD-TYPE"   "AMP PEAK 21(15Q26.1) MUTATED" 
                    TCGA-D7-6520                     TCGA-D7-6521 
  "AMP PEAK 21(15Q26.1) MUTATED" "AMP PEAK 21(15Q26.1) WILD-TYPE" 
                    TCGA-D7-6522                     TCGA-D7-6524 
"AMP PEAK 21(15Q26.1) WILD-TYPE" "AMP PEAK 21(15Q26.1) WILD-TYPE" 
                    TCGA-D7-6525                     TCGA-D7-6526 
  "AMP PEAK 21(15Q26.1) MUTATED" "AMP PEAK 21(15Q26.1) WILD-TYPE" 
                    TCGA-D7-6527                     TCGA-D7-6528 
"AMP PEAK 21(15Q26.1) WILD-TYPE"   "AMP PEAK 21(15Q26.1) MUTATED" 
                    TCGA-D7-6815                     TCGA-D7-6817 
  "AMP PEAK 21(15Q26.1) MUTATED" "AMP PEAK 21(15Q26.1) WILD-TYPE" 
                    TCGA-D7-6818                     TCGA-D7-6820 
  "AMP PEAK 21(15Q26.1) MUTATED" "AMP PEAK 21(15Q26.1) WILD-TYPE" 
                    TCGA-D7-6822                     TCGA-EQ-5647 
  "AMP PEAK 21(15Q26.1) MUTATED"   "AMP PEAK 21(15Q26.1) MUTATED" 
                    TCGA-EQ-8122                     TCGA-F1-6177 
  "AMP PEAK 21(15Q26.1) MUTATED" "AMP PEAK 21(15Q26.1) WILD-TYPE" 
                    TCGA-F1-6874                     TCGA-F1-6875 
"AMP PEAK 21(15Q26.1) WILD-TYPE"   "AMP PEAK 21(15Q26.1) MUTATED" 
                    TCGA-FP-7735                     TCGA-FP-7829 
"AMP PEAK 21(15Q26.1) WILD-TYPE"   "AMP PEAK 21(15Q26.1) MUTATED" 
                    TCGA-FP-7916                     TCGA-FP-7998 
"AMP PEAK 21(15Q26.1) WILD-TYPE" "AMP PEAK 21(15Q26.1) WILD-TYPE" 
                    TCGA-HJ-7597                     TCGA-IN-7806 
"AMP PEAK 21(15Q26.1) WILD-TYPE" "AMP PEAK 21(15Q26.1) WILD-TYPE" 
                    TCGA-IN-7808                     TCGA-IP-7968 
  "AMP PEAK 21(15Q26.1) MUTATED"   "AMP PEAK 21(15Q26.1) MUTATED" 
[1] "hr=" "1.2"
D21V2, continuous
D21V3, binary
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  AMP PEAK 21(15Q26.1) MUTATED     13   27
  AMP PEAK 21(15Q26.1) WILD-TYPE   52   69
        clus
vv       AMP PEAK 21(15Q26.1) MUTATED AMP PEAK 21(15Q26.1) WILD-TYPE
  FEMALE                           13                             52
  MALE                             27                             69
D21V4, multiclass
D21V5, multiclass
    clus
vv   AMP PEAK 21(15Q26.1) MUTATED AMP PEAK 21(15Q26.1) WILD-TYPE
  T1                            0                              6
  T2                           16                             37
  T3                           17                             42
  T4                            5                             28
D21V6, multiclass
    clus
vv   AMP PEAK 21(15Q26.1) MUTATED AMP PEAK 21(15Q26.1) WILD-TYPE
  N0                           10                             40
  N1                           13                             44
  N2                            8                             16
  N3                            7                             12
D21V7, multiclass
    clus
vv   AMP PEAK 21(15Q26.1) MUTATED AMP PEAK 21(15Q26.1) WILD-TYPE
  M0                           31                            101
  M1                            6                             12
  MX                            3                              8
D21V8, multiclass
     clus
vv    AMP PEAK 21(15Q26.1) MUTATED AMP PEAK 21(15Q26.1) WILD-TYPE
  I                              4                             21
  II                            12                             31
  III                           12                             36
  IV                             9                             20
D21V9, binary
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  AMP PEAK 21(15Q26.1) MUTATED     38    2
  AMP PEAK 21(15Q26.1) WILD-TYPE  118    3
     clus
vv    AMP PEAK 21(15Q26.1) MUTATED AMP PEAK 21(15Q26.1) WILD-TYPE
  NO                             2                              3
  YES                           38                            118

Clustering(22) Variable = Amp Peak 22(17q12) mutation analysis
D22V1, survival
                  TCGA-B7-5816                   TCGA-B7-5818 
"AMP PEAK 22(17Q12) WILD-TYPE"   "AMP PEAK 22(17Q12) MUTATED" 
                  TCGA-BR-6452                   TCGA-BR-6455 
"AMP PEAK 22(17Q12) WILD-TYPE" "AMP PEAK 22(17Q12) WILD-TYPE" 
                  TCGA-BR-6457                   TCGA-BR-6458 
"AMP PEAK 22(17Q12) WILD-TYPE" "AMP PEAK 22(17Q12) WILD-TYPE" 
                  TCGA-BR-6563                   TCGA-BR-6564 
"AMP PEAK 22(17Q12) WILD-TYPE" "AMP PEAK 22(17Q12) WILD-TYPE" 
                  TCGA-BR-6565                   TCGA-BR-6566 
  "AMP PEAK 22(17Q12) MUTATED" "AMP PEAK 22(17Q12) WILD-TYPE" 
                  TCGA-BR-6705                   TCGA-BR-6706 
"AMP PEAK 22(17Q12) WILD-TYPE" "AMP PEAK 22(17Q12) WILD-TYPE" 
                  TCGA-BR-6707                   TCGA-BR-6709 
"AMP PEAK 22(17Q12) WILD-TYPE" "AMP PEAK 22(17Q12) WILD-TYPE" 
                  TCGA-BR-6710                   TCGA-BR-6801 
"AMP PEAK 22(17Q12) WILD-TYPE" "AMP PEAK 22(17Q12) WILD-TYPE" 
                  TCGA-BR-6802                   TCGA-BR-6803 
"AMP PEAK 22(17Q12) WILD-TYPE" "AMP PEAK 22(17Q12) WILD-TYPE" 
                  TCGA-BR-6852                   TCGA-BR-7196 
"AMP PEAK 22(17Q12) WILD-TYPE" "AMP PEAK 22(17Q12) WILD-TYPE" 
                  TCGA-BR-7197                   TCGA-BR-7703 
  "AMP PEAK 22(17Q12) MUTATED" "AMP PEAK 22(17Q12) WILD-TYPE" 
                  TCGA-BR-7704                   TCGA-BR-7707 
"AMP PEAK 22(17Q12) WILD-TYPE" "AMP PEAK 22(17Q12) WILD-TYPE" 
                  TCGA-BR-7715                   TCGA-BR-7716 
  "AMP PEAK 22(17Q12) MUTATED" "AMP PEAK 22(17Q12) WILD-TYPE" 
                  TCGA-BR-7717                   TCGA-BR-7722 
  "AMP PEAK 22(17Q12) MUTATED" "AMP PEAK 22(17Q12) WILD-TYPE" 
                  TCGA-BR-7723                   TCGA-BR-7851 
"AMP PEAK 22(17Q12) WILD-TYPE" "AMP PEAK 22(17Q12) WILD-TYPE" 
                  TCGA-BR-7901                   TCGA-BR-7957 
"AMP PEAK 22(17Q12) WILD-TYPE" "AMP PEAK 22(17Q12) WILD-TYPE" 
                  TCGA-BR-7958                   TCGA-BR-7959 
"AMP PEAK 22(17Q12) WILD-TYPE" "AMP PEAK 22(17Q12) WILD-TYPE" 
                  TCGA-BR-8059                   TCGA-BR-8060 
"AMP PEAK 22(17Q12) WILD-TYPE" "AMP PEAK 22(17Q12) WILD-TYPE" 
                  TCGA-BR-8077                   TCGA-BR-8078 
"AMP PEAK 22(17Q12) WILD-TYPE" "AMP PEAK 22(17Q12) WILD-TYPE" 
                  TCGA-BR-8080                   TCGA-BR-8081 
"AMP PEAK 22(17Q12) WILD-TYPE" "AMP PEAK 22(17Q12) WILD-TYPE" 
                  TCGA-BR-8284                   TCGA-BR-8285 
"AMP PEAK 22(17Q12) WILD-TYPE" "AMP PEAK 22(17Q12) WILD-TYPE" 
                  TCGA-BR-8286                   TCGA-BR-8289 
"AMP PEAK 22(17Q12) WILD-TYPE" "AMP PEAK 22(17Q12) WILD-TYPE" 
                  TCGA-BR-8291                   TCGA-BR-8295 
"AMP PEAK 22(17Q12) WILD-TYPE" "AMP PEAK 22(17Q12) WILD-TYPE" 
                  TCGA-BR-8296                   TCGA-BR-8297 
"AMP PEAK 22(17Q12) WILD-TYPE" "AMP PEAK 22(17Q12) WILD-TYPE" 
                  TCGA-CD-5798                   TCGA-CD-5799 
"AMP PEAK 22(17Q12) WILD-TYPE"   "AMP PEAK 22(17Q12) MUTATED" 
                  TCGA-CD-5800                   TCGA-CD-5801 
  "AMP PEAK 22(17Q12) MUTATED" "AMP PEAK 22(17Q12) WILD-TYPE" 
                  TCGA-CD-5802                   TCGA-CD-5803 
"AMP PEAK 22(17Q12) WILD-TYPE" "AMP PEAK 22(17Q12) WILD-TYPE" 
                  TCGA-CG-4300                   TCGA-CG-4301 
  "AMP PEAK 22(17Q12) MUTATED"   "AMP PEAK 22(17Q12) MUTATED" 
                  TCGA-CG-4304                   TCGA-CG-4305 
"AMP PEAK 22(17Q12) WILD-TYPE" "AMP PEAK 22(17Q12) WILD-TYPE" 
                  TCGA-CG-4306                   TCGA-CG-4436 
"AMP PEAK 22(17Q12) WILD-TYPE"   "AMP PEAK 22(17Q12) MUTATED" 
                  TCGA-CG-4437                   TCGA-CG-4438 
"AMP PEAK 22(17Q12) WILD-TYPE" "AMP PEAK 22(17Q12) WILD-TYPE" 
                  TCGA-CG-4440                   TCGA-CG-4441 
  "AMP PEAK 22(17Q12) MUTATED" "AMP PEAK 22(17Q12) WILD-TYPE" 
                  TCGA-CG-4443                   TCGA-CG-4444 
"AMP PEAK 22(17Q12) WILD-TYPE"   "AMP PEAK 22(17Q12) MUTATED" 
                  TCGA-CG-4449                   TCGA-CG-4455 
  "AMP PEAK 22(17Q12) MUTATED"   "AMP PEAK 22(17Q12) MUTATED" 
                  TCGA-CG-4460                   TCGA-CG-4462 
  "AMP PEAK 22(17Q12) MUTATED" "AMP PEAK 22(17Q12) WILD-TYPE" 
                  TCGA-CG-4465                   TCGA-CG-4466 
"AMP PEAK 22(17Q12) WILD-TYPE"   "AMP PEAK 22(17Q12) MUTATED" 
                  TCGA-CG-4469                   TCGA-CG-4472 
"AMP PEAK 22(17Q12) WILD-TYPE" "AMP PEAK 22(17Q12) WILD-TYPE" 
                  TCGA-CG-4474                   TCGA-CG-4477 
"AMP PEAK 22(17Q12) WILD-TYPE" "AMP PEAK 22(17Q12) WILD-TYPE" 
                  TCGA-CG-5716                   TCGA-CG-5717 
  "AMP PEAK 22(17Q12) MUTATED" "AMP PEAK 22(17Q12) WILD-TYPE" 
                  TCGA-CG-5718                   TCGA-CG-5719 
"AMP PEAK 22(17Q12) WILD-TYPE"   "AMP PEAK 22(17Q12) MUTATED" 
                  TCGA-CG-5720                   TCGA-CG-5721 
"AMP PEAK 22(17Q12) WILD-TYPE" "AMP PEAK 22(17Q12) WILD-TYPE" 
                  TCGA-CG-5722                   TCGA-CG-5723 
  "AMP PEAK 22(17Q12) MUTATED" "AMP PEAK 22(17Q12) WILD-TYPE" 
                  TCGA-CG-5724                   TCGA-CG-5725 
  "AMP PEAK 22(17Q12) MUTATED" "AMP PEAK 22(17Q12) WILD-TYPE" 
                  TCGA-CG-5726                   TCGA-CG-5727 
"AMP PEAK 22(17Q12) WILD-TYPE" "AMP PEAK 22(17Q12) WILD-TYPE" 
                  TCGA-CG-5728                   TCGA-CG-5730 
"AMP PEAK 22(17Q12) WILD-TYPE"   "AMP PEAK 22(17Q12) MUTATED" 
                  TCGA-CG-5732                   TCGA-CG-5733 
  "AMP PEAK 22(17Q12) MUTATED" "AMP PEAK 22(17Q12) WILD-TYPE" 
                  TCGA-CG-5734                   TCGA-D7-5577 
"AMP PEAK 22(17Q12) WILD-TYPE" "AMP PEAK 22(17Q12) WILD-TYPE" 
                  TCGA-D7-5578                   TCGA-D7-5579 
"AMP PEAK 22(17Q12) WILD-TYPE" "AMP PEAK 22(17Q12) WILD-TYPE" 
                  TCGA-D7-6518                   TCGA-D7-6519 
"AMP PEAK 22(17Q12) WILD-TYPE" "AMP PEAK 22(17Q12) WILD-TYPE" 
                  TCGA-D7-6520                   TCGA-D7-6521 
"AMP PEAK 22(17Q12) WILD-TYPE"   "AMP PEAK 22(17Q12) MUTATED" 
                  TCGA-D7-6522                   TCGA-D7-6524 
"AMP PEAK 22(17Q12) WILD-TYPE" "AMP PEAK 22(17Q12) WILD-TYPE" 
                  TCGA-D7-6525                   TCGA-D7-6526 
  "AMP PEAK 22(17Q12) MUTATED"   "AMP PEAK 22(17Q12) MUTATED" 
                  TCGA-D7-6527                   TCGA-D7-6528 
  "AMP PEAK 22(17Q12) MUTATED" "AMP PEAK 22(17Q12) WILD-TYPE" 
                  TCGA-D7-6815                   TCGA-D7-6817 
  "AMP PEAK 22(17Q12) MUTATED"   "AMP PEAK 22(17Q12) MUTATED" 
                  TCGA-D7-6818                   TCGA-D7-6820 
"AMP PEAK 22(17Q12) WILD-TYPE"   "AMP PEAK 22(17Q12) MUTATED" 
                  TCGA-D7-6822                   TCGA-EQ-5647 
  "AMP PEAK 22(17Q12) MUTATED"   "AMP PEAK 22(17Q12) MUTATED" 
                  TCGA-EQ-8122                   TCGA-F1-6177 
"AMP PEAK 22(17Q12) WILD-TYPE" "AMP PEAK 22(17Q12) WILD-TYPE" 
                  TCGA-F1-6874                   TCGA-F1-6875 
"AMP PEAK 22(17Q12) WILD-TYPE"   "AMP PEAK 22(17Q12) MUTATED" 
                  TCGA-FP-7735                   TCGA-FP-7829 
  "AMP PEAK 22(17Q12) MUTATED" "AMP PEAK 22(17Q12) WILD-TYPE" 
                  TCGA-FP-7916                   TCGA-FP-7998 
  "AMP PEAK 22(17Q12) MUTATED" "AMP PEAK 22(17Q12) WILD-TYPE" 
                  TCGA-HJ-7597                   TCGA-IN-7806 
  "AMP PEAK 22(17Q12) MUTATED" "AMP PEAK 22(17Q12) WILD-TYPE" 
                  TCGA-IN-7808                   TCGA-IP-7968 
"AMP PEAK 22(17Q12) WILD-TYPE"   "AMP PEAK 22(17Q12) MUTATED" 
                  TCGA-B7-5816                   TCGA-B7-5818 
"AMP PEAK 22(17Q12) WILD-TYPE"   "AMP PEAK 22(17Q12) MUTATED" 
                  TCGA-BR-6452                   TCGA-BR-6455 
"AMP PEAK 22(17Q12) WILD-TYPE" "AMP PEAK 22(17Q12) WILD-TYPE" 
                  TCGA-BR-6457                   TCGA-BR-6458 
"AMP PEAK 22(17Q12) WILD-TYPE" "AMP PEAK 22(17Q12) WILD-TYPE" 
                  TCGA-BR-6563                   TCGA-BR-6564 
"AMP PEAK 22(17Q12) WILD-TYPE" "AMP PEAK 22(17Q12) WILD-TYPE" 
                  TCGA-BR-6565                   TCGA-BR-6566 
  "AMP PEAK 22(17Q12) MUTATED" "AMP PEAK 22(17Q12) WILD-TYPE" 
                  TCGA-BR-6705                   TCGA-BR-6706 
"AMP PEAK 22(17Q12) WILD-TYPE" "AMP PEAK 22(17Q12) WILD-TYPE" 
                  TCGA-BR-6707                   TCGA-BR-6709 
"AMP PEAK 22(17Q12) WILD-TYPE" "AMP PEAK 22(17Q12) WILD-TYPE" 
                  TCGA-BR-6710                   TCGA-BR-6801 
"AMP PEAK 22(17Q12) WILD-TYPE" "AMP PEAK 22(17Q12) WILD-TYPE" 
                  TCGA-BR-6802                   TCGA-BR-6803 
"AMP PEAK 22(17Q12) WILD-TYPE" "AMP PEAK 22(17Q12) WILD-TYPE" 
                  TCGA-BR-6852                   TCGA-BR-7196 
"AMP PEAK 22(17Q12) WILD-TYPE" "AMP PEAK 22(17Q12) WILD-TYPE" 
                  TCGA-BR-7197                   TCGA-BR-7703 
  "AMP PEAK 22(17Q12) MUTATED" "AMP PEAK 22(17Q12) WILD-TYPE" 
                  TCGA-BR-7704                   TCGA-BR-7707 
"AMP PEAK 22(17Q12) WILD-TYPE" "AMP PEAK 22(17Q12) WILD-TYPE" 
                  TCGA-BR-7715                   TCGA-BR-7716 
  "AMP PEAK 22(17Q12) MUTATED" "AMP PEAK 22(17Q12) WILD-TYPE" 
                  TCGA-BR-7717                   TCGA-BR-7722 
  "AMP PEAK 22(17Q12) MUTATED" "AMP PEAK 22(17Q12) WILD-TYPE" 
                  TCGA-BR-7723                   TCGA-BR-7851 
"AMP PEAK 22(17Q12) WILD-TYPE" "AMP PEAK 22(17Q12) WILD-TYPE" 
                  TCGA-BR-7901                   TCGA-BR-7957 
"AMP PEAK 22(17Q12) WILD-TYPE" "AMP PEAK 22(17Q12) WILD-TYPE" 
                  TCGA-BR-7958                   TCGA-BR-7959 
"AMP PEAK 22(17Q12) WILD-TYPE" "AMP PEAK 22(17Q12) WILD-TYPE" 
                  TCGA-BR-8059                   TCGA-BR-8060 
"AMP PEAK 22(17Q12) WILD-TYPE" "AMP PEAK 22(17Q12) WILD-TYPE" 
                  TCGA-BR-8077                   TCGA-BR-8078 
"AMP PEAK 22(17Q12) WILD-TYPE" "AMP PEAK 22(17Q12) WILD-TYPE" 
                  TCGA-BR-8080                   TCGA-BR-8081 
"AMP PEAK 22(17Q12) WILD-TYPE" "AMP PEAK 22(17Q12) WILD-TYPE" 
                  TCGA-BR-8284                   TCGA-BR-8285 
"AMP PEAK 22(17Q12) WILD-TYPE" "AMP PEAK 22(17Q12) WILD-TYPE" 
                  TCGA-BR-8286                   TCGA-BR-8289 
"AMP PEAK 22(17Q12) WILD-TYPE" "AMP PEAK 22(17Q12) WILD-TYPE" 
                  TCGA-BR-8291                   TCGA-BR-8295 
"AMP PEAK 22(17Q12) WILD-TYPE" "AMP PEAK 22(17Q12) WILD-TYPE" 
                  TCGA-BR-8296                   TCGA-BR-8297 
"AMP PEAK 22(17Q12) WILD-TYPE" "AMP PEAK 22(17Q12) WILD-TYPE" 
                  TCGA-CD-5798                   TCGA-CD-5799 
"AMP PEAK 22(17Q12) WILD-TYPE"   "AMP PEAK 22(17Q12) MUTATED" 
                  TCGA-CD-5800                   TCGA-CD-5801 
  "AMP PEAK 22(17Q12) MUTATED" "AMP PEAK 22(17Q12) WILD-TYPE" 
                  TCGA-CD-5802                   TCGA-CD-5803 
"AMP PEAK 22(17Q12) WILD-TYPE" "AMP PEAK 22(17Q12) WILD-TYPE" 
                  TCGA-CG-4300                   TCGA-CG-4301 
  "AMP PEAK 22(17Q12) MUTATED"   "AMP PEAK 22(17Q12) MUTATED" 
                  TCGA-CG-4304                   TCGA-CG-4305 
"AMP PEAK 22(17Q12) WILD-TYPE" "AMP PEAK 22(17Q12) WILD-TYPE" 
                  TCGA-CG-4306                   TCGA-CG-4436 
"AMP PEAK 22(17Q12) WILD-TYPE"   "AMP PEAK 22(17Q12) MUTATED" 
                  TCGA-CG-4437                   TCGA-CG-4438 
"AMP PEAK 22(17Q12) WILD-TYPE" "AMP PEAK 22(17Q12) WILD-TYPE" 
                  TCGA-CG-4440                   TCGA-CG-4441 
  "AMP PEAK 22(17Q12) MUTATED" "AMP PEAK 22(17Q12) WILD-TYPE" 
                  TCGA-CG-4443                   TCGA-CG-4444 
"AMP PEAK 22(17Q12) WILD-TYPE"   "AMP PEAK 22(17Q12) MUTATED" 
                  TCGA-CG-4449                   TCGA-CG-4455 
  "AMP PEAK 22(17Q12) MUTATED"   "AMP PEAK 22(17Q12) MUTATED" 
                  TCGA-CG-4460                   TCGA-CG-4462 
  "AMP PEAK 22(17Q12) MUTATED" "AMP PEAK 22(17Q12) WILD-TYPE" 
                  TCGA-CG-4465                   TCGA-CG-4466 
"AMP PEAK 22(17Q12) WILD-TYPE"   "AMP PEAK 22(17Q12) MUTATED" 
                  TCGA-CG-4469                   TCGA-CG-4472 
"AMP PEAK 22(17Q12) WILD-TYPE" "AMP PEAK 22(17Q12) WILD-TYPE" 
                  TCGA-CG-4474                   TCGA-CG-4477 
"AMP PEAK 22(17Q12) WILD-TYPE" "AMP PEAK 22(17Q12) WILD-TYPE" 
                  TCGA-CG-5716                   TCGA-CG-5717 
  "AMP PEAK 22(17Q12) MUTATED" "AMP PEAK 22(17Q12) WILD-TYPE" 
                  TCGA-CG-5718                   TCGA-CG-5719 
"AMP PEAK 22(17Q12) WILD-TYPE"   "AMP PEAK 22(17Q12) MUTATED" 
                  TCGA-CG-5720                   TCGA-CG-5721 
"AMP PEAK 22(17Q12) WILD-TYPE" "AMP PEAK 22(17Q12) WILD-TYPE" 
                  TCGA-CG-5722                   TCGA-CG-5723 
  "AMP PEAK 22(17Q12) MUTATED" "AMP PEAK 22(17Q12) WILD-TYPE" 
                  TCGA-CG-5724                   TCGA-CG-5725 
  "AMP PEAK 22(17Q12) MUTATED" "AMP PEAK 22(17Q12) WILD-TYPE" 
                  TCGA-CG-5726                   TCGA-CG-5727 
"AMP PEAK 22(17Q12) WILD-TYPE" "AMP PEAK 22(17Q12) WILD-TYPE" 
                  TCGA-CG-5728                   TCGA-CG-5730 
"AMP PEAK 22(17Q12) WILD-TYPE"   "AMP PEAK 22(17Q12) MUTATED" 
                  TCGA-CG-5732                   TCGA-CG-5733 
  "AMP PEAK 22(17Q12) MUTATED" "AMP PEAK 22(17Q12) WILD-TYPE" 
                  TCGA-CG-5734                   TCGA-D7-5577 
"AMP PEAK 22(17Q12) WILD-TYPE" "AMP PEAK 22(17Q12) WILD-TYPE" 
                  TCGA-D7-5578                   TCGA-D7-5579 
"AMP PEAK 22(17Q12) WILD-TYPE" "AMP PEAK 22(17Q12) WILD-TYPE" 
                  TCGA-D7-6518                   TCGA-D7-6519 
"AMP PEAK 22(17Q12) WILD-TYPE" "AMP PEAK 22(17Q12) WILD-TYPE" 
                  TCGA-D7-6520                   TCGA-D7-6521 
"AMP PEAK 22(17Q12) WILD-TYPE"   "AMP PEAK 22(17Q12) MUTATED" 
                  TCGA-D7-6522                   TCGA-D7-6524 
"AMP PEAK 22(17Q12) WILD-TYPE" "AMP PEAK 22(17Q12) WILD-TYPE" 
                  TCGA-D7-6525                   TCGA-D7-6526 
  "AMP PEAK 22(17Q12) MUTATED"   "AMP PEAK 22(17Q12) MUTATED" 
                  TCGA-D7-6527                   TCGA-D7-6528 
  "AMP PEAK 22(17Q12) MUTATED" "AMP PEAK 22(17Q12) WILD-TYPE" 
                  TCGA-D7-6815                   TCGA-D7-6817 
  "AMP PEAK 22(17Q12) MUTATED"   "AMP PEAK 22(17Q12) MUTATED" 
                  TCGA-D7-6818                   TCGA-D7-6820 
"AMP PEAK 22(17Q12) WILD-TYPE"   "AMP PEAK 22(17Q12) MUTATED" 
                  TCGA-D7-6822                   TCGA-EQ-5647 
  "AMP PEAK 22(17Q12) MUTATED"   "AMP PEAK 22(17Q12) MUTATED" 
                  TCGA-EQ-8122                   TCGA-F1-6177 
"AMP PEAK 22(17Q12) WILD-TYPE" "AMP PEAK 22(17Q12) WILD-TYPE" 
                  TCGA-F1-6874                   TCGA-F1-6875 
"AMP PEAK 22(17Q12) WILD-TYPE"   "AMP PEAK 22(17Q12) MUTATED" 
                  TCGA-FP-7735                   TCGA-FP-7829 
  "AMP PEAK 22(17Q12) MUTATED" "AMP PEAK 22(17Q12) WILD-TYPE" 
                  TCGA-FP-7916                   TCGA-FP-7998 
  "AMP PEAK 22(17Q12) MUTATED" "AMP PEAK 22(17Q12) WILD-TYPE" 
                  TCGA-HJ-7597                   TCGA-IN-7806 
  "AMP PEAK 22(17Q12) MUTATED" "AMP PEAK 22(17Q12) WILD-TYPE" 
                  TCGA-IN-7808                   TCGA-IP-7968 
"AMP PEAK 22(17Q12) WILD-TYPE"   "AMP PEAK 22(17Q12) MUTATED" 
                  TCGA-B7-5816                   TCGA-B7-5818 
"AMP PEAK 22(17Q12) WILD-TYPE"   "AMP PEAK 22(17Q12) MUTATED" 
                  TCGA-BR-6452                   TCGA-BR-6455 
"AMP PEAK 22(17Q12) WILD-TYPE" "AMP PEAK 22(17Q12) WILD-TYPE" 
                  TCGA-BR-6457                   TCGA-BR-6458 
"AMP PEAK 22(17Q12) WILD-TYPE" "AMP PEAK 22(17Q12) WILD-TYPE" 
                  TCGA-BR-6563                   TCGA-BR-6564 
"AMP PEAK 22(17Q12) WILD-TYPE" "AMP PEAK 22(17Q12) WILD-TYPE" 
                  TCGA-BR-6565                   TCGA-BR-6566 
  "AMP PEAK 22(17Q12) MUTATED" "AMP PEAK 22(17Q12) WILD-TYPE" 
                  TCGA-BR-6705                   TCGA-BR-6706 
"AMP PEAK 22(17Q12) WILD-TYPE" "AMP PEAK 22(17Q12) WILD-TYPE" 
                  TCGA-BR-6707                   TCGA-BR-6709 
"AMP PEAK 22(17Q12) WILD-TYPE" "AMP PEAK 22(17Q12) WILD-TYPE" 
                  TCGA-BR-6710                   TCGA-BR-6801 
"AMP PEAK 22(17Q12) WILD-TYPE" "AMP PEAK 22(17Q12) WILD-TYPE" 
                  TCGA-BR-6802                   TCGA-BR-6803 
"AMP PEAK 22(17Q12) WILD-TYPE" "AMP PEAK 22(17Q12) WILD-TYPE" 
                  TCGA-BR-6852                   TCGA-BR-7196 
"AMP PEAK 22(17Q12) WILD-TYPE" "AMP PEAK 22(17Q12) WILD-TYPE" 
                  TCGA-BR-7197                   TCGA-BR-7703 
  "AMP PEAK 22(17Q12) MUTATED" "AMP PEAK 22(17Q12) WILD-TYPE" 
                  TCGA-BR-7704                   TCGA-BR-7707 
"AMP PEAK 22(17Q12) WILD-TYPE" "AMP PEAK 22(17Q12) WILD-TYPE" 
                  TCGA-BR-7715                   TCGA-BR-7716 
  "AMP PEAK 22(17Q12) MUTATED" "AMP PEAK 22(17Q12) WILD-TYPE" 
                  TCGA-BR-7717                   TCGA-BR-7722 
  "AMP PEAK 22(17Q12) MUTATED" "AMP PEAK 22(17Q12) WILD-TYPE" 
                  TCGA-BR-7723                   TCGA-BR-7851 
"AMP PEAK 22(17Q12) WILD-TYPE" "AMP PEAK 22(17Q12) WILD-TYPE" 
                  TCGA-BR-7901                   TCGA-BR-7957 
"AMP PEAK 22(17Q12) WILD-TYPE" "AMP PEAK 22(17Q12) WILD-TYPE" 
                  TCGA-BR-7958                   TCGA-BR-7959 
"AMP PEAK 22(17Q12) WILD-TYPE" "AMP PEAK 22(17Q12) WILD-TYPE" 
                  TCGA-BR-8059                   TCGA-BR-8060 
"AMP PEAK 22(17Q12) WILD-TYPE" "AMP PEAK 22(17Q12) WILD-TYPE" 
                  TCGA-BR-8077                   TCGA-BR-8078 
"AMP PEAK 22(17Q12) WILD-TYPE" "AMP PEAK 22(17Q12) WILD-TYPE" 
                  TCGA-BR-8080                   TCGA-BR-8081 
"AMP PEAK 22(17Q12) WILD-TYPE" "AMP PEAK 22(17Q12) WILD-TYPE" 
                  TCGA-BR-8284                   TCGA-BR-8285 
"AMP PEAK 22(17Q12) WILD-TYPE" "AMP PEAK 22(17Q12) WILD-TYPE" 
                  TCGA-BR-8286                   TCGA-BR-8289 
"AMP PEAK 22(17Q12) WILD-TYPE" "AMP PEAK 22(17Q12) WILD-TYPE" 
                  TCGA-BR-8291                   TCGA-BR-8295 
"AMP PEAK 22(17Q12) WILD-TYPE" "AMP PEAK 22(17Q12) WILD-TYPE" 
                  TCGA-BR-8296                   TCGA-BR-8297 
"AMP PEAK 22(17Q12) WILD-TYPE" "AMP PEAK 22(17Q12) WILD-TYPE" 
                  TCGA-CD-5798                   TCGA-CD-5799 
"AMP PEAK 22(17Q12) WILD-TYPE"   "AMP PEAK 22(17Q12) MUTATED" 
                  TCGA-CD-5800                   TCGA-CD-5801 
  "AMP PEAK 22(17Q12) MUTATED" "AMP PEAK 22(17Q12) WILD-TYPE" 
                  TCGA-CD-5802                   TCGA-CD-5803 
"AMP PEAK 22(17Q12) WILD-TYPE" "AMP PEAK 22(17Q12) WILD-TYPE" 
                  TCGA-CG-4300                   TCGA-CG-4301 
  "AMP PEAK 22(17Q12) MUTATED"   "AMP PEAK 22(17Q12) MUTATED" 
                  TCGA-CG-4304                   TCGA-CG-4305 
"AMP PEAK 22(17Q12) WILD-TYPE" "AMP PEAK 22(17Q12) WILD-TYPE" 
                  TCGA-CG-4306                   TCGA-CG-4436 
"AMP PEAK 22(17Q12) WILD-TYPE"   "AMP PEAK 22(17Q12) MUTATED" 
                  TCGA-CG-4437                   TCGA-CG-4438 
"AMP PEAK 22(17Q12) WILD-TYPE" "AMP PEAK 22(17Q12) WILD-TYPE" 
                  TCGA-CG-4440                   TCGA-CG-4441 
  "AMP PEAK 22(17Q12) MUTATED" "AMP PEAK 22(17Q12) WILD-TYPE" 
                  TCGA-CG-4443                   TCGA-CG-4444 
"AMP PEAK 22(17Q12) WILD-TYPE"   "AMP PEAK 22(17Q12) MUTATED" 
                  TCGA-CG-4449                   TCGA-CG-4455 
  "AMP PEAK 22(17Q12) MUTATED"   "AMP PEAK 22(17Q12) MUTATED" 
                  TCGA-CG-4460                   TCGA-CG-4462 
  "AMP PEAK 22(17Q12) MUTATED" "AMP PEAK 22(17Q12) WILD-TYPE" 
                  TCGA-CG-4465                   TCGA-CG-4466 
"AMP PEAK 22(17Q12) WILD-TYPE"   "AMP PEAK 22(17Q12) MUTATED" 
                  TCGA-CG-4469                   TCGA-CG-4472 
"AMP PEAK 22(17Q12) WILD-TYPE" "AMP PEAK 22(17Q12) WILD-TYPE" 
                  TCGA-CG-4474                   TCGA-CG-4477 
"AMP PEAK 22(17Q12) WILD-TYPE" "AMP PEAK 22(17Q12) WILD-TYPE" 
                  TCGA-CG-5716                   TCGA-CG-5717 
  "AMP PEAK 22(17Q12) MUTATED" "AMP PEAK 22(17Q12) WILD-TYPE" 
                  TCGA-CG-5718                   TCGA-CG-5719 
"AMP PEAK 22(17Q12) WILD-TYPE"   "AMP PEAK 22(17Q12) MUTATED" 
                  TCGA-CG-5720                   TCGA-CG-5721 
"AMP PEAK 22(17Q12) WILD-TYPE" "AMP PEAK 22(17Q12) WILD-TYPE" 
                  TCGA-CG-5722                   TCGA-CG-5723 
  "AMP PEAK 22(17Q12) MUTATED" "AMP PEAK 22(17Q12) WILD-TYPE" 
                  TCGA-CG-5724                   TCGA-CG-5725 
  "AMP PEAK 22(17Q12) MUTATED" "AMP PEAK 22(17Q12) WILD-TYPE" 
                  TCGA-CG-5726                   TCGA-CG-5727 
"AMP PEAK 22(17Q12) WILD-TYPE" "AMP PEAK 22(17Q12) WILD-TYPE" 
                  TCGA-CG-5728                   TCGA-CG-5730 
"AMP PEAK 22(17Q12) WILD-TYPE"   "AMP PEAK 22(17Q12) MUTATED" 
                  TCGA-CG-5732                   TCGA-CG-5733 
  "AMP PEAK 22(17Q12) MUTATED" "AMP PEAK 22(17Q12) WILD-TYPE" 
                  TCGA-CG-5734                   TCGA-D7-5577 
"AMP PEAK 22(17Q12) WILD-TYPE" "AMP PEAK 22(17Q12) WILD-TYPE" 
                  TCGA-D7-5578                   TCGA-D7-5579 
"AMP PEAK 22(17Q12) WILD-TYPE" "AMP PEAK 22(17Q12) WILD-TYPE" 
                  TCGA-D7-6518                   TCGA-D7-6519 
"AMP PEAK 22(17Q12) WILD-TYPE" "AMP PEAK 22(17Q12) WILD-TYPE" 
                  TCGA-D7-6520                   TCGA-D7-6521 
"AMP PEAK 22(17Q12) WILD-TYPE"   "AMP PEAK 22(17Q12) MUTATED" 
                  TCGA-D7-6522                   TCGA-D7-6524 
"AMP PEAK 22(17Q12) WILD-TYPE" "AMP PEAK 22(17Q12) WILD-TYPE" 
                  TCGA-D7-6525                   TCGA-D7-6526 
  "AMP PEAK 22(17Q12) MUTATED"   "AMP PEAK 22(17Q12) MUTATED" 
                  TCGA-D7-6527                   TCGA-D7-6528 
  "AMP PEAK 22(17Q12) MUTATED" "AMP PEAK 22(17Q12) WILD-TYPE" 
                  TCGA-D7-6815                   TCGA-D7-6817 
  "AMP PEAK 22(17Q12) MUTATED"   "AMP PEAK 22(17Q12) MUTATED" 
                  TCGA-D7-6818                   TCGA-D7-6820 
"AMP PEAK 22(17Q12) WILD-TYPE"   "AMP PEAK 22(17Q12) MUTATED" 
                  TCGA-D7-6822                   TCGA-EQ-5647 
  "AMP PEAK 22(17Q12) MUTATED"   "AMP PEAK 22(17Q12) MUTATED" 
                  TCGA-EQ-8122                   TCGA-F1-6177 
"AMP PEAK 22(17Q12) WILD-TYPE" "AMP PEAK 22(17Q12) WILD-TYPE" 
                  TCGA-F1-6874                   TCGA-F1-6875 
"AMP PEAK 22(17Q12) WILD-TYPE"   "AMP PEAK 22(17Q12) MUTATED" 
                  TCGA-FP-7735                   TCGA-FP-7829 
  "AMP PEAK 22(17Q12) MUTATED" "AMP PEAK 22(17Q12) WILD-TYPE" 
                  TCGA-FP-7916                   TCGA-FP-7998 
  "AMP PEAK 22(17Q12) MUTATED" "AMP PEAK 22(17Q12) WILD-TYPE" 
                  TCGA-HJ-7597                   TCGA-IN-7806 
  "AMP PEAK 22(17Q12) MUTATED" "AMP PEAK 22(17Q12) WILD-TYPE" 
                  TCGA-IN-7808                   TCGA-IP-7968 
"AMP PEAK 22(17Q12) WILD-TYPE"   "AMP PEAK 22(17Q12) MUTATED" 
[1] "hr=" "1.3"
D22V2, continuous
D22V3, binary
[1] "tbl2"
                              cls
clus                           [,1] [,2]
  AMP PEAK 22(17Q12) MUTATED     13   30
  AMP PEAK 22(17Q12) WILD-TYPE   52   66
        clus
vv       AMP PEAK 22(17Q12) MUTATED AMP PEAK 22(17Q12) WILD-TYPE
  FEMALE                         13                           52
  MALE                           30                           66
D22V4, multiclass
D22V5, multiclass
    clus
vv   AMP PEAK 22(17Q12) MUTATED AMP PEAK 22(17Q12) WILD-TYPE
  T1                          0                            6
  T2                         20                           33
  T3                         14                           45
  T4                          7                           26
D22V6, multiclass
    clus
vv   AMP PEAK 22(17Q12) MUTATED AMP PEAK 22(17Q12) WILD-TYPE
  N0                         14                           36
  N1                         11                           46
  N2                          9                           15
  N3                          6                           13
D22V7, multiclass
    clus
vv   AMP PEAK 22(17Q12) MUTATED AMP PEAK 22(17Q12) WILD-TYPE
  M0                         28                          104
  M1                          9                            9
  MX                          6                            5
D22V8, multiclass
     clus
vv    AMP PEAK 22(17Q12) MUTATED AMP PEAK 22(17Q12) WILD-TYPE
  I                            8                           17
  II                          11                           32
  III                         10                           38
  IV                          11                           18
D22V9, binary
[1] "tbl2"
                              cls
clus                           [,1] [,2]
  AMP PEAK 22(17Q12) MUTATED     41    2
  AMP PEAK 22(17Q12) WILD-TYPE  115    3
     clus
vv    AMP PEAK 22(17Q12) MUTATED AMP PEAK 22(17Q12) WILD-TYPE
  NO                           2                            3
  YES                         41                          115

Clustering(23) Variable = Amp Peak 23(18q11.2) mutation analysis
D23V1, survival
                    TCGA-B7-5816                     TCGA-B7-5818 
"AMP PEAK 23(18Q11.2) WILD-TYPE" "AMP PEAK 23(18Q11.2) WILD-TYPE" 
                    TCGA-BR-6452                     TCGA-BR-6455 
"AMP PEAK 23(18Q11.2) WILD-TYPE" "AMP PEAK 23(18Q11.2) WILD-TYPE" 
                    TCGA-BR-6457                     TCGA-BR-6458 
"AMP PEAK 23(18Q11.2) WILD-TYPE" "AMP PEAK 23(18Q11.2) WILD-TYPE" 
                    TCGA-BR-6563                     TCGA-BR-6564 
"AMP PEAK 23(18Q11.2) WILD-TYPE"   "AMP PEAK 23(18Q11.2) MUTATED" 
                    TCGA-BR-6565                     TCGA-BR-6566 
  "AMP PEAK 23(18Q11.2) MUTATED" "AMP PEAK 23(18Q11.2) WILD-TYPE" 
                    TCGA-BR-6705                     TCGA-BR-6706 
"AMP PEAK 23(18Q11.2) WILD-TYPE" "AMP PEAK 23(18Q11.2) WILD-TYPE" 
                    TCGA-BR-6707                     TCGA-BR-6709 
"AMP PEAK 23(18Q11.2) WILD-TYPE" "AMP PEAK 23(18Q11.2) WILD-TYPE" 
                    TCGA-BR-6710                     TCGA-BR-6801 
"AMP PEAK 23(18Q11.2) WILD-TYPE" "AMP PEAK 23(18Q11.2) WILD-TYPE" 
                    TCGA-BR-6802                     TCGA-BR-6803 
"AMP PEAK 23(18Q11.2) WILD-TYPE" "AMP PEAK 23(18Q11.2) WILD-TYPE" 
                    TCGA-BR-6852                     TCGA-BR-7196 
"AMP PEAK 23(18Q11.2) WILD-TYPE" "AMP PEAK 23(18Q11.2) WILD-TYPE" 
                    TCGA-BR-7197                     TCGA-BR-7703 
"AMP PEAK 23(18Q11.2) WILD-TYPE" "AMP PEAK 23(18Q11.2) WILD-TYPE" 
                    TCGA-BR-7704                     TCGA-BR-7707 
"AMP PEAK 23(18Q11.2) WILD-TYPE" "AMP PEAK 23(18Q11.2) WILD-TYPE" 
                    TCGA-BR-7715                     TCGA-BR-7716 
  "AMP PEAK 23(18Q11.2) MUTATED" "AMP PEAK 23(18Q11.2) WILD-TYPE" 
                    TCGA-BR-7717                     TCGA-BR-7722 
"AMP PEAK 23(18Q11.2) WILD-TYPE"   "AMP PEAK 23(18Q11.2) MUTATED" 
                    TCGA-BR-7723                     TCGA-BR-7851 
  "AMP PEAK 23(18Q11.2) MUTATED" "AMP PEAK 23(18Q11.2) WILD-TYPE" 
                    TCGA-BR-7901                     TCGA-BR-7957 
  "AMP PEAK 23(18Q11.2) MUTATED" "AMP PEAK 23(18Q11.2) WILD-TYPE" 
                    TCGA-BR-7958                     TCGA-BR-7959 
"AMP PEAK 23(18Q11.2) WILD-TYPE" "AMP PEAK 23(18Q11.2) WILD-TYPE" 
                    TCGA-BR-8059                     TCGA-BR-8060 
"AMP PEAK 23(18Q11.2) WILD-TYPE" "AMP PEAK 23(18Q11.2) WILD-TYPE" 
                    TCGA-BR-8077                     TCGA-BR-8078 
"AMP PEAK 23(18Q11.2) WILD-TYPE" "AMP PEAK 23(18Q11.2) WILD-TYPE" 
                    TCGA-BR-8080                     TCGA-BR-8081 
"AMP PEAK 23(18Q11.2) WILD-TYPE" "AMP PEAK 23(18Q11.2) WILD-TYPE" 
                    TCGA-BR-8284                     TCGA-BR-8285 
"AMP PEAK 23(18Q11.2) WILD-TYPE" "AMP PEAK 23(18Q11.2) WILD-TYPE" 
                    TCGA-BR-8286                     TCGA-BR-8289 
"AMP PEAK 23(18Q11.2) WILD-TYPE" "AMP PEAK 23(18Q11.2) WILD-TYPE" 
                    TCGA-BR-8291                     TCGA-BR-8295 
"AMP PEAK 23(18Q11.2) WILD-TYPE" "AMP PEAK 23(18Q11.2) WILD-TYPE" 
                    TCGA-BR-8296                     TCGA-BR-8297 
"AMP PEAK 23(18Q11.2) WILD-TYPE" "AMP PEAK 23(18Q11.2) WILD-TYPE" 
                    TCGA-CD-5798                     TCGA-CD-5799 
  "AMP PEAK 23(18Q11.2) MUTATED"   "AMP PEAK 23(18Q11.2) MUTATED" 
                    TCGA-CD-5800                     TCGA-CD-5801 
  "AMP PEAK 23(18Q11.2) MUTATED" "AMP PEAK 23(18Q11.2) WILD-TYPE" 
                    TCGA-CD-5802                     TCGA-CD-5803 
"AMP PEAK 23(18Q11.2) WILD-TYPE" "AMP PEAK 23(18Q11.2) WILD-TYPE" 
                    TCGA-CG-4300                     TCGA-CG-4301 
  "AMP PEAK 23(18Q11.2) MUTATED"   "AMP PEAK 23(18Q11.2) MUTATED" 
                    TCGA-CG-4304                     TCGA-CG-4305 
"AMP PEAK 23(18Q11.2) WILD-TYPE" "AMP PEAK 23(18Q11.2) WILD-TYPE" 
                    TCGA-CG-4306                     TCGA-CG-4436 
"AMP PEAK 23(18Q11.2) WILD-TYPE" "AMP PEAK 23(18Q11.2) WILD-TYPE" 
                    TCGA-CG-4437                     TCGA-CG-4438 
"AMP PEAK 23(18Q11.2) WILD-TYPE" "AMP PEAK 23(18Q11.2) WILD-TYPE" 
                    TCGA-CG-4440                     TCGA-CG-4441 
  "AMP PEAK 23(18Q11.2) MUTATED"   "AMP PEAK 23(18Q11.2) MUTATED" 
                    TCGA-CG-4443                     TCGA-CG-4444 
"AMP PEAK 23(18Q11.2) WILD-TYPE" "AMP PEAK 23(18Q11.2) WILD-TYPE" 
                    TCGA-CG-4449                     TCGA-CG-4455 
  "AMP PEAK 23(18Q11.2) MUTATED" "AMP PEAK 23(18Q11.2) WILD-TYPE" 
                    TCGA-CG-4460                     TCGA-CG-4462 
  "AMP PEAK 23(18Q11.2) MUTATED" "AMP PEAK 23(18Q11.2) WILD-TYPE" 
                    TCGA-CG-4465                     TCGA-CG-4466 
"AMP PEAK 23(18Q11.2) WILD-TYPE" "AMP PEAK 23(18Q11.2) WILD-TYPE" 
                    TCGA-CG-4469                     TCGA-CG-4472 
  "AMP PEAK 23(18Q11.2) MUTATED"   "AMP PEAK 23(18Q11.2) MUTATED" 
                    TCGA-CG-4474                     TCGA-CG-4477 
  "AMP PEAK 23(18Q11.2) MUTATED" "AMP PEAK 23(18Q11.2) WILD-TYPE" 
                    TCGA-CG-5716                     TCGA-CG-5717 
"AMP PEAK 23(18Q11.2) WILD-TYPE" "AMP PEAK 23(18Q11.2) WILD-TYPE" 
                    TCGA-CG-5718                     TCGA-CG-5719 
"AMP PEAK 23(18Q11.2) WILD-TYPE" "AMP PEAK 23(18Q11.2) WILD-TYPE" 
                    TCGA-CG-5720                     TCGA-CG-5721 
"AMP PEAK 23(18Q11.2) WILD-TYPE" "AMP PEAK 23(18Q11.2) WILD-TYPE" 
                    TCGA-CG-5722                     TCGA-CG-5723 
"AMP PEAK 23(18Q11.2) WILD-TYPE" "AMP PEAK 23(18Q11.2) WILD-TYPE" 
                    TCGA-CG-5724                     TCGA-CG-5725 
  "AMP PEAK 23(18Q11.2) MUTATED" "AMP PEAK 23(18Q11.2) WILD-TYPE" 
                    TCGA-CG-5726                     TCGA-CG-5727 
"AMP PEAK 23(18Q11.2) WILD-TYPE" "AMP PEAK 23(18Q11.2) WILD-TYPE" 
                    TCGA-CG-5728                     TCGA-CG-5730 
"AMP PEAK 23(18Q11.2) WILD-TYPE" "AMP PEAK 23(18Q11.2) WILD-TYPE" 
                    TCGA-CG-5732                     TCGA-CG-5733 
"AMP PEAK 23(18Q11.2) WILD-TYPE" "AMP PEAK 23(18Q11.2) WILD-TYPE" 
                    TCGA-CG-5734                     TCGA-D7-5577 
"AMP PEAK 23(18Q11.2) WILD-TYPE" "AMP PEAK 23(18Q11.2) WILD-TYPE" 
                    TCGA-D7-5578                     TCGA-D7-5579 
"AMP PEAK 23(18Q11.2) WILD-TYPE"   "AMP PEAK 23(18Q11.2) MUTATED" 
                    TCGA-D7-6518                     TCGA-D7-6519 
  "AMP PEAK 23(18Q11.2) MUTATED" "AMP PEAK 23(18Q11.2) WILD-TYPE" 
                    TCGA-D7-6520                     TCGA-D7-6521 
"AMP PEAK 23(18Q11.2) WILD-TYPE"   "AMP PEAK 23(18Q11.2) MUTATED" 
                    TCGA-D7-6522                     TCGA-D7-6524 
"AMP PEAK 23(18Q11.2) WILD-TYPE" "AMP PEAK 23(18Q11.2) WILD-TYPE" 
                    TCGA-D7-6525                     TCGA-D7-6526 
  "AMP PEAK 23(18Q11.2) MUTATED"   "AMP PEAK 23(18Q11.2) MUTATED" 
                    TCGA-D7-6527                     TCGA-D7-6528 
  "AMP PEAK 23(18Q11.2) MUTATED"   "AMP PEAK 23(18Q11.2) MUTATED" 
                    TCGA-D7-6815                     TCGA-D7-6817 
"AMP PEAK 23(18Q11.2) WILD-TYPE"   "AMP PEAK 23(18Q11.2) MUTATED" 
                    TCGA-D7-6818                     TCGA-D7-6820 
"AMP PEAK 23(18Q11.2) WILD-TYPE" "AMP PEAK 23(18Q11.2) WILD-TYPE" 
                    TCGA-D7-6822                     TCGA-EQ-5647 
"AMP PEAK 23(18Q11.2) WILD-TYPE"   "AMP PEAK 23(18Q11.2) MUTATED" 
                    TCGA-EQ-8122                     TCGA-F1-6177 
"AMP PEAK 23(18Q11.2) WILD-TYPE" "AMP PEAK 23(18Q11.2) WILD-TYPE" 
                    TCGA-F1-6874                     TCGA-F1-6875 
"AMP PEAK 23(18Q11.2) WILD-TYPE"   "AMP PEAK 23(18Q11.2) MUTATED" 
                    TCGA-FP-7735                     TCGA-FP-7829 
"AMP PEAK 23(18Q11.2) WILD-TYPE" "AMP PEAK 23(18Q11.2) WILD-TYPE" 
                    TCGA-FP-7916                     TCGA-FP-7998 
"AMP PEAK 23(18Q11.2) WILD-TYPE" "AMP PEAK 23(18Q11.2) WILD-TYPE" 
                    TCGA-HJ-7597                     TCGA-IN-7806 
  "AMP PEAK 23(18Q11.2) MUTATED" "AMP PEAK 23(18Q11.2) WILD-TYPE" 
                    TCGA-IN-7808                     TCGA-IP-7968 
"AMP PEAK 23(18Q11.2) WILD-TYPE" "AMP PEAK 23(18Q11.2) WILD-TYPE" 
                    TCGA-B7-5816                     TCGA-B7-5818 
"AMP PEAK 23(18Q11.2) WILD-TYPE" "AMP PEAK 23(18Q11.2) WILD-TYPE" 
                    TCGA-BR-6452                     TCGA-BR-6455 
"AMP PEAK 23(18Q11.2) WILD-TYPE" "AMP PEAK 23(18Q11.2) WILD-TYPE" 
                    TCGA-BR-6457                     TCGA-BR-6458 
"AMP PEAK 23(18Q11.2) WILD-TYPE" "AMP PEAK 23(18Q11.2) WILD-TYPE" 
                    TCGA-BR-6563                     TCGA-BR-6564 
"AMP PEAK 23(18Q11.2) WILD-TYPE"   "AMP PEAK 23(18Q11.2) MUTATED" 
                    TCGA-BR-6565                     TCGA-BR-6566 
  "AMP PEAK 23(18Q11.2) MUTATED" "AMP PEAK 23(18Q11.2) WILD-TYPE" 
                    TCGA-BR-6705                     TCGA-BR-6706 
"AMP PEAK 23(18Q11.2) WILD-TYPE" "AMP PEAK 23(18Q11.2) WILD-TYPE" 
                    TCGA-BR-6707                     TCGA-BR-6709 
"AMP PEAK 23(18Q11.2) WILD-TYPE" "AMP PEAK 23(18Q11.2) WILD-TYPE" 
                    TCGA-BR-6710                     TCGA-BR-6801 
"AMP PEAK 23(18Q11.2) WILD-TYPE" "AMP PEAK 23(18Q11.2) WILD-TYPE" 
                    TCGA-BR-6802                     TCGA-BR-6803 
"AMP PEAK 23(18Q11.2) WILD-TYPE" "AMP PEAK 23(18Q11.2) WILD-TYPE" 
                    TCGA-BR-6852                     TCGA-BR-7196 
"AMP PEAK 23(18Q11.2) WILD-TYPE" "AMP PEAK 23(18Q11.2) WILD-TYPE" 
                    TCGA-BR-7197                     TCGA-BR-7703 
"AMP PEAK 23(18Q11.2) WILD-TYPE" "AMP PEAK 23(18Q11.2) WILD-TYPE" 
                    TCGA-BR-7704                     TCGA-BR-7707 
"AMP PEAK 23(18Q11.2) WILD-TYPE" "AMP PEAK 23(18Q11.2) WILD-TYPE" 
                    TCGA-BR-7715                     TCGA-BR-7716 
  "AMP PEAK 23(18Q11.2) MUTATED" "AMP PEAK 23(18Q11.2) WILD-TYPE" 
                    TCGA-BR-7717                     TCGA-BR-7722 
"AMP PEAK 23(18Q11.2) WILD-TYPE"   "AMP PEAK 23(18Q11.2) MUTATED" 
                    TCGA-BR-7723                     TCGA-BR-7851 
  "AMP PEAK 23(18Q11.2) MUTATED" "AMP PEAK 23(18Q11.2) WILD-TYPE" 
                    TCGA-BR-7901                     TCGA-BR-7957 
  "AMP PEAK 23(18Q11.2) MUTATED" "AMP PEAK 23(18Q11.2) WILD-TYPE" 
                    TCGA-BR-7958                     TCGA-BR-7959 
"AMP PEAK 23(18Q11.2) WILD-TYPE" "AMP PEAK 23(18Q11.2) WILD-TYPE" 
                    TCGA-BR-8059                     TCGA-BR-8060 
"AMP PEAK 23(18Q11.2) WILD-TYPE" "AMP PEAK 23(18Q11.2) WILD-TYPE" 
                    TCGA-BR-8077                     TCGA-BR-8078 
"AMP PEAK 23(18Q11.2) WILD-TYPE" "AMP PEAK 23(18Q11.2) WILD-TYPE" 
                    TCGA-BR-8080                     TCGA-BR-8081 
"AMP PEAK 23(18Q11.2) WILD-TYPE" "AMP PEAK 23(18Q11.2) WILD-TYPE" 
                    TCGA-BR-8284                     TCGA-BR-8285 
"AMP PEAK 23(18Q11.2) WILD-TYPE" "AMP PEAK 23(18Q11.2) WILD-TYPE" 
                    TCGA-BR-8286                     TCGA-BR-8289 
"AMP PEAK 23(18Q11.2) WILD-TYPE" "AMP PEAK 23(18Q11.2) WILD-TYPE" 
                    TCGA-BR-8291                     TCGA-BR-8295 
"AMP PEAK 23(18Q11.2) WILD-TYPE" "AMP PEAK 23(18Q11.2) WILD-TYPE" 
                    TCGA-BR-8296                     TCGA-BR-8297 
"AMP PEAK 23(18Q11.2) WILD-TYPE" "AMP PEAK 23(18Q11.2) WILD-TYPE" 
                    TCGA-CD-5798                     TCGA-CD-5799 
  "AMP PEAK 23(18Q11.2) MUTATED"   "AMP PEAK 23(18Q11.2) MUTATED" 
                    TCGA-CD-5800                     TCGA-CD-5801 
  "AMP PEAK 23(18Q11.2) MUTATED" "AMP PEAK 23(18Q11.2) WILD-TYPE" 
                    TCGA-CD-5802                     TCGA-CD-5803 
"AMP PEAK 23(18Q11.2) WILD-TYPE" "AMP PEAK 23(18Q11.2) WILD-TYPE" 
                    TCGA-CG-4300                     TCGA-CG-4301 
  "AMP PEAK 23(18Q11.2) MUTATED"   "AMP PEAK 23(18Q11.2) MUTATED" 
                    TCGA-CG-4304                     TCGA-CG-4305 
"AMP PEAK 23(18Q11.2) WILD-TYPE" "AMP PEAK 23(18Q11.2) WILD-TYPE" 
                    TCGA-CG-4306                     TCGA-CG-4436 
"AMP PEAK 23(18Q11.2) WILD-TYPE" "AMP PEAK 23(18Q11.2) WILD-TYPE" 
                    TCGA-CG-4437                     TCGA-CG-4438 
"AMP PEAK 23(18Q11.2) WILD-TYPE" "AMP PEAK 23(18Q11.2) WILD-TYPE" 
                    TCGA-CG-4440                     TCGA-CG-4441 
  "AMP PEAK 23(18Q11.2) MUTATED"   "AMP PEAK 23(18Q11.2) MUTATED" 
                    TCGA-CG-4443                     TCGA-CG-4444 
"AMP PEAK 23(18Q11.2) WILD-TYPE" "AMP PEAK 23(18Q11.2) WILD-TYPE" 
                    TCGA-CG-4449                     TCGA-CG-4455 
  "AMP PEAK 23(18Q11.2) MUTATED" "AMP PEAK 23(18Q11.2) WILD-TYPE" 
                    TCGA-CG-4460                     TCGA-CG-4462 
  "AMP PEAK 23(18Q11.2) MUTATED" "AMP PEAK 23(18Q11.2) WILD-TYPE" 
                    TCGA-CG-4465                     TCGA-CG-4466 
"AMP PEAK 23(18Q11.2) WILD-TYPE" "AMP PEAK 23(18Q11.2) WILD-TYPE" 
                    TCGA-CG-4469                     TCGA-CG-4472 
  "AMP PEAK 23(18Q11.2) MUTATED"   "AMP PEAK 23(18Q11.2) MUTATED" 
                    TCGA-CG-4474                     TCGA-CG-4477 
  "AMP PEAK 23(18Q11.2) MUTATED" "AMP PEAK 23(18Q11.2) WILD-TYPE" 
                    TCGA-CG-5716                     TCGA-CG-5717 
"AMP PEAK 23(18Q11.2) WILD-TYPE" "AMP PEAK 23(18Q11.2) WILD-TYPE" 
                    TCGA-CG-5718                     TCGA-CG-5719 
"AMP PEAK 23(18Q11.2) WILD-TYPE" "AMP PEAK 23(18Q11.2) WILD-TYPE" 
                    TCGA-CG-5720                     TCGA-CG-5721 
"AMP PEAK 23(18Q11.2) WILD-TYPE" "AMP PEAK 23(18Q11.2) WILD-TYPE" 
                    TCGA-CG-5722                     TCGA-CG-5723 
"AMP PEAK 23(18Q11.2) WILD-TYPE" "AMP PEAK 23(18Q11.2) WILD-TYPE" 
                    TCGA-CG-5724                     TCGA-CG-5725 
  "AMP PEAK 23(18Q11.2) MUTATED" "AMP PEAK 23(18Q11.2) WILD-TYPE" 
                    TCGA-CG-5726                     TCGA-CG-5727 
"AMP PEAK 23(18Q11.2) WILD-TYPE" "AMP PEAK 23(18Q11.2) WILD-TYPE" 
                    TCGA-CG-5728                     TCGA-CG-5730 
"AMP PEAK 23(18Q11.2) WILD-TYPE" "AMP PEAK 23(18Q11.2) WILD-TYPE" 
                    TCGA-CG-5732                     TCGA-CG-5733 
"AMP PEAK 23(18Q11.2) WILD-TYPE" "AMP PEAK 23(18Q11.2) WILD-TYPE" 
                    TCGA-CG-5734                     TCGA-D7-5577 
"AMP PEAK 23(18Q11.2) WILD-TYPE" "AMP PEAK 23(18Q11.2) WILD-TYPE" 
                    TCGA-D7-5578                     TCGA-D7-5579 
"AMP PEAK 23(18Q11.2) WILD-TYPE"   "AMP PEAK 23(18Q11.2) MUTATED" 
                    TCGA-D7-6518                     TCGA-D7-6519 
  "AMP PEAK 23(18Q11.2) MUTATED" "AMP PEAK 23(18Q11.2) WILD-TYPE" 
                    TCGA-D7-6520                     TCGA-D7-6521 
"AMP PEAK 23(18Q11.2) WILD-TYPE"   "AMP PEAK 23(18Q11.2) MUTATED" 
                    TCGA-D7-6522                     TCGA-D7-6524 
"AMP PEAK 23(18Q11.2) WILD-TYPE" "AMP PEAK 23(18Q11.2) WILD-TYPE" 
                    TCGA-D7-6525                     TCGA-D7-6526 
  "AMP PEAK 23(18Q11.2) MUTATED"   "AMP PEAK 23(18Q11.2) MUTATED" 
                    TCGA-D7-6527                     TCGA-D7-6528 
  "AMP PEAK 23(18Q11.2) MUTATED"   "AMP PEAK 23(18Q11.2) MUTATED" 
                    TCGA-D7-6815                     TCGA-D7-6817 
"AMP PEAK 23(18Q11.2) WILD-TYPE"   "AMP PEAK 23(18Q11.2) MUTATED" 
                    TCGA-D7-6818                     TCGA-D7-6820 
"AMP PEAK 23(18Q11.2) WILD-TYPE" "AMP PEAK 23(18Q11.2) WILD-TYPE" 
                    TCGA-D7-6822                     TCGA-EQ-5647 
"AMP PEAK 23(18Q11.2) WILD-TYPE"   "AMP PEAK 23(18Q11.2) MUTATED" 
                    TCGA-EQ-8122                     TCGA-F1-6177 
"AMP PEAK 23(18Q11.2) WILD-TYPE" "AMP PEAK 23(18Q11.2) WILD-TYPE" 
                    TCGA-F1-6874                     TCGA-F1-6875 
"AMP PEAK 23(18Q11.2) WILD-TYPE"   "AMP PEAK 23(18Q11.2) MUTATED" 
                    TCGA-FP-7735                     TCGA-FP-7829 
"AMP PEAK 23(18Q11.2) WILD-TYPE" "AMP PEAK 23(18Q11.2) WILD-TYPE" 
                    TCGA-FP-7916                     TCGA-FP-7998 
"AMP PEAK 23(18Q11.2) WILD-TYPE" "AMP PEAK 23(18Q11.2) WILD-TYPE" 
                    TCGA-HJ-7597                     TCGA-IN-7806 
  "AMP PEAK 23(18Q11.2) MUTATED" "AMP PEAK 23(18Q11.2) WILD-TYPE" 
                    TCGA-IN-7808                     TCGA-IP-7968 
"AMP PEAK 23(18Q11.2) WILD-TYPE" "AMP PEAK 23(18Q11.2) WILD-TYPE" 
                    TCGA-B7-5816                     TCGA-B7-5818 
"AMP PEAK 23(18Q11.2) WILD-TYPE" "AMP PEAK 23(18Q11.2) WILD-TYPE" 
                    TCGA-BR-6452                     TCGA-BR-6455 
"AMP PEAK 23(18Q11.2) WILD-TYPE" "AMP PEAK 23(18Q11.2) WILD-TYPE" 
                    TCGA-BR-6457                     TCGA-BR-6458 
"AMP PEAK 23(18Q11.2) WILD-TYPE" "AMP PEAK 23(18Q11.2) WILD-TYPE" 
                    TCGA-BR-6563                     TCGA-BR-6564 
"AMP PEAK 23(18Q11.2) WILD-TYPE"   "AMP PEAK 23(18Q11.2) MUTATED" 
                    TCGA-BR-6565                     TCGA-BR-6566 
  "AMP PEAK 23(18Q11.2) MUTATED" "AMP PEAK 23(18Q11.2) WILD-TYPE" 
                    TCGA-BR-6705                     TCGA-BR-6706 
"AMP PEAK 23(18Q11.2) WILD-TYPE" "AMP PEAK 23(18Q11.2) WILD-TYPE" 
                    TCGA-BR-6707                     TCGA-BR-6709 
"AMP PEAK 23(18Q11.2) WILD-TYPE" "AMP PEAK 23(18Q11.2) WILD-TYPE" 
                    TCGA-BR-6710                     TCGA-BR-6801 
"AMP PEAK 23(18Q11.2) WILD-TYPE" "AMP PEAK 23(18Q11.2) WILD-TYPE" 
                    TCGA-BR-6802                     TCGA-BR-6803 
"AMP PEAK 23(18Q11.2) WILD-TYPE" "AMP PEAK 23(18Q11.2) WILD-TYPE" 
                    TCGA-BR-6852                     TCGA-BR-7196 
"AMP PEAK 23(18Q11.2) WILD-TYPE" "AMP PEAK 23(18Q11.2) WILD-TYPE" 
                    TCGA-BR-7197                     TCGA-BR-7703 
"AMP PEAK 23(18Q11.2) WILD-TYPE" "AMP PEAK 23(18Q11.2) WILD-TYPE" 
                    TCGA-BR-7704                     TCGA-BR-7707 
"AMP PEAK 23(18Q11.2) WILD-TYPE" "AMP PEAK 23(18Q11.2) WILD-TYPE" 
                    TCGA-BR-7715                     TCGA-BR-7716 
  "AMP PEAK 23(18Q11.2) MUTATED" "AMP PEAK 23(18Q11.2) WILD-TYPE" 
                    TCGA-BR-7717                     TCGA-BR-7722 
"AMP PEAK 23(18Q11.2) WILD-TYPE"   "AMP PEAK 23(18Q11.2) MUTATED" 
                    TCGA-BR-7723                     TCGA-BR-7851 
  "AMP PEAK 23(18Q11.2) MUTATED" "AMP PEAK 23(18Q11.2) WILD-TYPE" 
                    TCGA-BR-7901                     TCGA-BR-7957 
  "AMP PEAK 23(18Q11.2) MUTATED" "AMP PEAK 23(18Q11.2) WILD-TYPE" 
                    TCGA-BR-7958                     TCGA-BR-7959 
"AMP PEAK 23(18Q11.2) WILD-TYPE" "AMP PEAK 23(18Q11.2) WILD-TYPE" 
                    TCGA-BR-8059                     TCGA-BR-8060 
"AMP PEAK 23(18Q11.2) WILD-TYPE" "AMP PEAK 23(18Q11.2) WILD-TYPE" 
                    TCGA-BR-8077                     TCGA-BR-8078 
"AMP PEAK 23(18Q11.2) WILD-TYPE" "AMP PEAK 23(18Q11.2) WILD-TYPE" 
                    TCGA-BR-8080                     TCGA-BR-8081 
"AMP PEAK 23(18Q11.2) WILD-TYPE" "AMP PEAK 23(18Q11.2) WILD-TYPE" 
                    TCGA-BR-8284                     TCGA-BR-8285 
"AMP PEAK 23(18Q11.2) WILD-TYPE" "AMP PEAK 23(18Q11.2) WILD-TYPE" 
                    TCGA-BR-8286                     TCGA-BR-8289 
"AMP PEAK 23(18Q11.2) WILD-TYPE" "AMP PEAK 23(18Q11.2) WILD-TYPE" 
                    TCGA-BR-8291                     TCGA-BR-8295 
"AMP PEAK 23(18Q11.2) WILD-TYPE" "AMP PEAK 23(18Q11.2) WILD-TYPE" 
                    TCGA-BR-8296                     TCGA-BR-8297 
"AMP PEAK 23(18Q11.2) WILD-TYPE" "AMP PEAK 23(18Q11.2) WILD-TYPE" 
                    TCGA-CD-5798                     TCGA-CD-5799 
  "AMP PEAK 23(18Q11.2) MUTATED"   "AMP PEAK 23(18Q11.2) MUTATED" 
                    TCGA-CD-5800                     TCGA-CD-5801 
  "AMP PEAK 23(18Q11.2) MUTATED" "AMP PEAK 23(18Q11.2) WILD-TYPE" 
                    TCGA-CD-5802                     TCGA-CD-5803 
"AMP PEAK 23(18Q11.2) WILD-TYPE" "AMP PEAK 23(18Q11.2) WILD-TYPE" 
                    TCGA-CG-4300                     TCGA-CG-4301 
  "AMP PEAK 23(18Q11.2) MUTATED"   "AMP PEAK 23(18Q11.2) MUTATED" 
                    TCGA-CG-4304                     TCGA-CG-4305 
"AMP PEAK 23(18Q11.2) WILD-TYPE" "AMP PEAK 23(18Q11.2) WILD-TYPE" 
                    TCGA-CG-4306                     TCGA-CG-4436 
"AMP PEAK 23(18Q11.2) WILD-TYPE" "AMP PEAK 23(18Q11.2) WILD-TYPE" 
                    TCGA-CG-4437                     TCGA-CG-4438 
"AMP PEAK 23(18Q11.2) WILD-TYPE" "AMP PEAK 23(18Q11.2) WILD-TYPE" 
                    TCGA-CG-4440                     TCGA-CG-4441 
  "AMP PEAK 23(18Q11.2) MUTATED"   "AMP PEAK 23(18Q11.2) MUTATED" 
                    TCGA-CG-4443                     TCGA-CG-4444 
"AMP PEAK 23(18Q11.2) WILD-TYPE" "AMP PEAK 23(18Q11.2) WILD-TYPE" 
                    TCGA-CG-4449                     TCGA-CG-4455 
  "AMP PEAK 23(18Q11.2) MUTATED" "AMP PEAK 23(18Q11.2) WILD-TYPE" 
                    TCGA-CG-4460                     TCGA-CG-4462 
  "AMP PEAK 23(18Q11.2) MUTATED" "AMP PEAK 23(18Q11.2) WILD-TYPE" 
                    TCGA-CG-4465                     TCGA-CG-4466 
"AMP PEAK 23(18Q11.2) WILD-TYPE" "AMP PEAK 23(18Q11.2) WILD-TYPE" 
                    TCGA-CG-4469                     TCGA-CG-4472 
  "AMP PEAK 23(18Q11.2) MUTATED"   "AMP PEAK 23(18Q11.2) MUTATED" 
                    TCGA-CG-4474                     TCGA-CG-4477 
  "AMP PEAK 23(18Q11.2) MUTATED" "AMP PEAK 23(18Q11.2) WILD-TYPE" 
                    TCGA-CG-5716                     TCGA-CG-5717 
"AMP PEAK 23(18Q11.2) WILD-TYPE" "AMP PEAK 23(18Q11.2) WILD-TYPE" 
                    TCGA-CG-5718                     TCGA-CG-5719 
"AMP PEAK 23(18Q11.2) WILD-TYPE" "AMP PEAK 23(18Q11.2) WILD-TYPE" 
                    TCGA-CG-5720                     TCGA-CG-5721 
"AMP PEAK 23(18Q11.2) WILD-TYPE" "AMP PEAK 23(18Q11.2) WILD-TYPE" 
                    TCGA-CG-5722                     TCGA-CG-5723 
"AMP PEAK 23(18Q11.2) WILD-TYPE" "AMP PEAK 23(18Q11.2) WILD-TYPE" 
                    TCGA-CG-5724                     TCGA-CG-5725 
  "AMP PEAK 23(18Q11.2) MUTATED" "AMP PEAK 23(18Q11.2) WILD-TYPE" 
                    TCGA-CG-5726                     TCGA-CG-5727 
"AMP PEAK 23(18Q11.2) WILD-TYPE" "AMP PEAK 23(18Q11.2) WILD-TYPE" 
                    TCGA-CG-5728                     TCGA-CG-5730 
"AMP PEAK 23(18Q11.2) WILD-TYPE" "AMP PEAK 23(18Q11.2) WILD-TYPE" 
                    TCGA-CG-5732                     TCGA-CG-5733 
"AMP PEAK 23(18Q11.2) WILD-TYPE" "AMP PEAK 23(18Q11.2) WILD-TYPE" 
                    TCGA-CG-5734                     TCGA-D7-5577 
"AMP PEAK 23(18Q11.2) WILD-TYPE" "AMP PEAK 23(18Q11.2) WILD-TYPE" 
                    TCGA-D7-5578                     TCGA-D7-5579 
"AMP PEAK 23(18Q11.2) WILD-TYPE"   "AMP PEAK 23(18Q11.2) MUTATED" 
                    TCGA-D7-6518                     TCGA-D7-6519 
  "AMP PEAK 23(18Q11.2) MUTATED" "AMP PEAK 23(18Q11.2) WILD-TYPE" 
                    TCGA-D7-6520                     TCGA-D7-6521 
"AMP PEAK 23(18Q11.2) WILD-TYPE"   "AMP PEAK 23(18Q11.2) MUTATED" 
                    TCGA-D7-6522                     TCGA-D7-6524 
"AMP PEAK 23(18Q11.2) WILD-TYPE" "AMP PEAK 23(18Q11.2) WILD-TYPE" 
                    TCGA-D7-6525                     TCGA-D7-6526 
  "AMP PEAK 23(18Q11.2) MUTATED"   "AMP PEAK 23(18Q11.2) MUTATED" 
                    TCGA-D7-6527                     TCGA-D7-6528 
  "AMP PEAK 23(18Q11.2) MUTATED"   "AMP PEAK 23(18Q11.2) MUTATED" 
                    TCGA-D7-6815                     TCGA-D7-6817 
"AMP PEAK 23(18Q11.2) WILD-TYPE"   "AMP PEAK 23(18Q11.2) MUTATED" 
                    TCGA-D7-6818                     TCGA-D7-6820 
"AMP PEAK 23(18Q11.2) WILD-TYPE" "AMP PEAK 23(18Q11.2) WILD-TYPE" 
                    TCGA-D7-6822                     TCGA-EQ-5647 
"AMP PEAK 23(18Q11.2) WILD-TYPE"   "AMP PEAK 23(18Q11.2) MUTATED" 
                    TCGA-EQ-8122                     TCGA-F1-6177 
"AMP PEAK 23(18Q11.2) WILD-TYPE" "AMP PEAK 23(18Q11.2) WILD-TYPE" 
                    TCGA-F1-6874                     TCGA-F1-6875 
"AMP PEAK 23(18Q11.2) WILD-TYPE"   "AMP PEAK 23(18Q11.2) MUTATED" 
                    TCGA-FP-7735                     TCGA-FP-7829 
"AMP PEAK 23(18Q11.2) WILD-TYPE" "AMP PEAK 23(18Q11.2) WILD-TYPE" 
                    TCGA-FP-7916                     TCGA-FP-7998 
"AMP PEAK 23(18Q11.2) WILD-TYPE" "AMP PEAK 23(18Q11.2) WILD-TYPE" 
                    TCGA-HJ-7597                     TCGA-IN-7806 
  "AMP PEAK 23(18Q11.2) MUTATED" "AMP PEAK 23(18Q11.2) WILD-TYPE" 
                    TCGA-IN-7808                     TCGA-IP-7968 
"AMP PEAK 23(18Q11.2) WILD-TYPE" "AMP PEAK 23(18Q11.2) WILD-TYPE" 
[1] "hr=" "2.5"
D23V2, continuous
D23V3, binary
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  AMP PEAK 23(18Q11.2) MUTATED     14   30
  AMP PEAK 23(18Q11.2) WILD-TYPE   51   66
        clus
vv       AMP PEAK 23(18Q11.2) MUTATED AMP PEAK 23(18Q11.2) WILD-TYPE
  FEMALE                           14                             51
  MALE                             30                             66
D23V4, multiclass
D23V5, multiclass
    clus
vv   AMP PEAK 23(18Q11.2) MUTATED AMP PEAK 23(18Q11.2) WILD-TYPE
  T1                            0                              6
  T2                           13                             40
  T3                           19                             40
  T4                            6                             27
D23V6, multiclass
    clus
vv   AMP PEAK 23(18Q11.2) MUTATED AMP PEAK 23(18Q11.2) WILD-TYPE
  N0                            9                             41
  N1                           15                             42
  N2                            8                             16
  N3                            8                             11
D23V7, multiclass
    clus
vv   AMP PEAK 23(18Q11.2) MUTATED AMP PEAK 23(18Q11.2) WILD-TYPE
  M0                           34                             98
  M1                            6                             12
  MX                            4                              7
D23V8, multiclass
     clus
vv    AMP PEAK 23(18Q11.2) MUTATED AMP PEAK 23(18Q11.2) WILD-TYPE
  I                              4                             21
  II                            10                             33
  III                           13                             35
  IV                            10                             19
D23V9, binary
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  AMP PEAK 23(18Q11.2) MUTATED     41    3
  AMP PEAK 23(18Q11.2) WILD-TYPE  115    2
     clus
vv    AMP PEAK 23(18Q11.2) MUTATED AMP PEAK 23(18Q11.2) WILD-TYPE
  NO                             3                              2
  YES                           41                            115

Clustering(24) Variable = Amp Peak 24(19q12) mutation analysis
D24V1, survival
                  TCGA-B7-5816                   TCGA-B7-5818 
"AMP PEAK 24(19Q12) WILD-TYPE" "AMP PEAK 24(19Q12) WILD-TYPE" 
                  TCGA-BR-6452                   TCGA-BR-6455 
"AMP PEAK 24(19Q12) WILD-TYPE" "AMP PEAK 24(19Q12) WILD-TYPE" 
                  TCGA-BR-6457                   TCGA-BR-6458 
"AMP PEAK 24(19Q12) WILD-TYPE"   "AMP PEAK 24(19Q12) MUTATED" 
                  TCGA-BR-6563                   TCGA-BR-6564 
"AMP PEAK 24(19Q12) WILD-TYPE" "AMP PEAK 24(19Q12) WILD-TYPE" 
                  TCGA-BR-6565                   TCGA-BR-6566 
"AMP PEAK 24(19Q12) WILD-TYPE" "AMP PEAK 24(19Q12) WILD-TYPE" 
                  TCGA-BR-6705                   TCGA-BR-6706 
"AMP PEAK 24(19Q12) WILD-TYPE" "AMP PEAK 24(19Q12) WILD-TYPE" 
                  TCGA-BR-6707                   TCGA-BR-6709 
"AMP PEAK 24(19Q12) WILD-TYPE" "AMP PEAK 24(19Q12) WILD-TYPE" 
                  TCGA-BR-6710                   TCGA-BR-6801 
"AMP PEAK 24(19Q12) WILD-TYPE" "AMP PEAK 24(19Q12) WILD-TYPE" 
                  TCGA-BR-6802                   TCGA-BR-6803 
"AMP PEAK 24(19Q12) WILD-TYPE" "AMP PEAK 24(19Q12) WILD-TYPE" 
                  TCGA-BR-6852                   TCGA-BR-7196 
"AMP PEAK 24(19Q12) WILD-TYPE" "AMP PEAK 24(19Q12) WILD-TYPE" 
                  TCGA-BR-7197                   TCGA-BR-7703 
  "AMP PEAK 24(19Q12) MUTATED" "AMP PEAK 24(19Q12) WILD-TYPE" 
                  TCGA-BR-7704                   TCGA-BR-7707 
"AMP PEAK 24(19Q12) WILD-TYPE" "AMP PEAK 24(19Q12) WILD-TYPE" 
                  TCGA-BR-7715                   TCGA-BR-7716 
  "AMP PEAK 24(19Q12) MUTATED"   "AMP PEAK 24(19Q12) MUTATED" 
                  TCGA-BR-7717                   TCGA-BR-7722 
"AMP PEAK 24(19Q12) WILD-TYPE" "AMP PEAK 24(19Q12) WILD-TYPE" 
                  TCGA-BR-7723                   TCGA-BR-7851 
  "AMP PEAK 24(19Q12) MUTATED" "AMP PEAK 24(19Q12) WILD-TYPE" 
                  TCGA-BR-7901                   TCGA-BR-7957 
  "AMP PEAK 24(19Q12) MUTATED" "AMP PEAK 24(19Q12) WILD-TYPE" 
                  TCGA-BR-7958                   TCGA-BR-7959 
"AMP PEAK 24(19Q12) WILD-TYPE" "AMP PEAK 24(19Q12) WILD-TYPE" 
                  TCGA-BR-8059                   TCGA-BR-8060 
"AMP PEAK 24(19Q12) WILD-TYPE" "AMP PEAK 24(19Q12) WILD-TYPE" 
                  TCGA-BR-8077                   TCGA-BR-8078 
"AMP PEAK 24(19Q12) WILD-TYPE" "AMP PEAK 24(19Q12) WILD-TYPE" 
                  TCGA-BR-8080                   TCGA-BR-8081 
"AMP PEAK 24(19Q12) WILD-TYPE" "AMP PEAK 24(19Q12) WILD-TYPE" 
                  TCGA-BR-8284                   TCGA-BR-8285 
"AMP PEAK 24(19Q12) WILD-TYPE" "AMP PEAK 24(19Q12) WILD-TYPE" 
                  TCGA-BR-8286                   TCGA-BR-8289 
"AMP PEAK 24(19Q12) WILD-TYPE" "AMP PEAK 24(19Q12) WILD-TYPE" 
                  TCGA-BR-8291                   TCGA-BR-8295 
"AMP PEAK 24(19Q12) WILD-TYPE" "AMP PEAK 24(19Q12) WILD-TYPE" 
                  TCGA-BR-8296                   TCGA-BR-8297 
"AMP PEAK 24(19Q12) WILD-TYPE" "AMP PEAK 24(19Q12) WILD-TYPE" 
                  TCGA-CD-5798                   TCGA-CD-5799 
"AMP PEAK 24(19Q12) WILD-TYPE" "AMP PEAK 24(19Q12) WILD-TYPE" 
                  TCGA-CD-5800                   TCGA-CD-5801 
  "AMP PEAK 24(19Q12) MUTATED"   "AMP PEAK 24(19Q12) MUTATED" 
                  TCGA-CD-5802                   TCGA-CD-5803 
  "AMP PEAK 24(19Q12) MUTATED" "AMP PEAK 24(19Q12) WILD-TYPE" 
                  TCGA-CG-4300                   TCGA-CG-4301 
"AMP PEAK 24(19Q12) WILD-TYPE" "AMP PEAK 24(19Q12) WILD-TYPE" 
                  TCGA-CG-4304                   TCGA-CG-4305 
"AMP PEAK 24(19Q12) WILD-TYPE" "AMP PEAK 24(19Q12) WILD-TYPE" 
                  TCGA-CG-4306                   TCGA-CG-4436 
"AMP PEAK 24(19Q12) WILD-TYPE" "AMP PEAK 24(19Q12) WILD-TYPE" 
                  TCGA-CG-4437                   TCGA-CG-4438 
"AMP PEAK 24(19Q12) WILD-TYPE"   "AMP PEAK 24(19Q12) MUTATED" 
                  TCGA-CG-4440                   TCGA-CG-4441 
"AMP PEAK 24(19Q12) WILD-TYPE" "AMP PEAK 24(19Q12) WILD-TYPE" 
                  TCGA-CG-4443                   TCGA-CG-4444 
"AMP PEAK 24(19Q12) WILD-TYPE"   "AMP PEAK 24(19Q12) MUTATED" 
                  TCGA-CG-4449                   TCGA-CG-4455 
  "AMP PEAK 24(19Q12) MUTATED" "AMP PEAK 24(19Q12) WILD-TYPE" 
                  TCGA-CG-4460                   TCGA-CG-4462 
  "AMP PEAK 24(19Q12) MUTATED" "AMP PEAK 24(19Q12) WILD-TYPE" 
                  TCGA-CG-4465                   TCGA-CG-4466 
"AMP PEAK 24(19Q12) WILD-TYPE" "AMP PEAK 24(19Q12) WILD-TYPE" 
                  TCGA-CG-4469                   TCGA-CG-4472 
"AMP PEAK 24(19Q12) WILD-TYPE" "AMP PEAK 24(19Q12) WILD-TYPE" 
                  TCGA-CG-4474                   TCGA-CG-4477 
  "AMP PEAK 24(19Q12) MUTATED" "AMP PEAK 24(19Q12) WILD-TYPE" 
                  TCGA-CG-5716                   TCGA-CG-5717 
"AMP PEAK 24(19Q12) WILD-TYPE" "AMP PEAK 24(19Q12) WILD-TYPE" 
                  TCGA-CG-5718                   TCGA-CG-5719 
"AMP PEAK 24(19Q12) WILD-TYPE" "AMP PEAK 24(19Q12) WILD-TYPE" 
                  TCGA-CG-5720                   TCGA-CG-5721 
"AMP PEAK 24(19Q12) WILD-TYPE" "AMP PEAK 24(19Q12) WILD-TYPE" 
                  TCGA-CG-5722                   TCGA-CG-5723 
  "AMP PEAK 24(19Q12) MUTATED" "AMP PEAK 24(19Q12) WILD-TYPE" 
                  TCGA-CG-5724                   TCGA-CG-5725 
"AMP PEAK 24(19Q12) WILD-TYPE" "AMP PEAK 24(19Q12) WILD-TYPE" 
                  TCGA-CG-5726                   TCGA-CG-5727 
"AMP PEAK 24(19Q12) WILD-TYPE" "AMP PEAK 24(19Q12) WILD-TYPE" 
                  TCGA-CG-5728                   TCGA-CG-5730 
"AMP PEAK 24(19Q12) WILD-TYPE"   "AMP PEAK 24(19Q12) MUTATED" 
                  TCGA-CG-5732                   TCGA-CG-5733 
"AMP PEAK 24(19Q12) WILD-TYPE" "AMP PEAK 24(19Q12) WILD-TYPE" 
                  TCGA-CG-5734                   TCGA-D7-5577 
"AMP PEAK 24(19Q12) WILD-TYPE"   "AMP PEAK 24(19Q12) MUTATED" 
                  TCGA-D7-5578                   TCGA-D7-5579 
  "AMP PEAK 24(19Q12) MUTATED"   "AMP PEAK 24(19Q12) MUTATED" 
                  TCGA-D7-6518                   TCGA-D7-6519 
  "AMP PEAK 24(19Q12) MUTATED" "AMP PEAK 24(19Q12) WILD-TYPE" 
                  TCGA-D7-6520                   TCGA-D7-6521 
  "AMP PEAK 24(19Q12) MUTATED"   "AMP PEAK 24(19Q12) MUTATED" 
                  TCGA-D7-6522                   TCGA-D7-6524 
"AMP PEAK 24(19Q12) WILD-TYPE" "AMP PEAK 24(19Q12) WILD-TYPE" 
                  TCGA-D7-6525                   TCGA-D7-6526 
"AMP PEAK 24(19Q12) WILD-TYPE"   "AMP PEAK 24(19Q12) MUTATED" 
                  TCGA-D7-6527                   TCGA-D7-6528 
  "AMP PEAK 24(19Q12) MUTATED"   "AMP PEAK 24(19Q12) MUTATED" 
                  TCGA-D7-6815                   TCGA-D7-6817 
"AMP PEAK 24(19Q12) WILD-TYPE" "AMP PEAK 24(19Q12) WILD-TYPE" 
                  TCGA-D7-6818                   TCGA-D7-6820 
  "AMP PEAK 24(19Q12) MUTATED" "AMP PEAK 24(19Q12) WILD-TYPE" 
                  TCGA-D7-6822                   TCGA-EQ-5647 
  "AMP PEAK 24(19Q12) MUTATED"   "AMP PEAK 24(19Q12) MUTATED" 
                  TCGA-EQ-8122                   TCGA-F1-6177 
"AMP PEAK 24(19Q12) WILD-TYPE" "AMP PEAK 24(19Q12) WILD-TYPE" 
                  TCGA-F1-6874                   TCGA-F1-6875 
"AMP PEAK 24(19Q12) WILD-TYPE"   "AMP PEAK 24(19Q12) MUTATED" 
                  TCGA-FP-7735                   TCGA-FP-7829 
  "AMP PEAK 24(19Q12) MUTATED" "AMP PEAK 24(19Q12) WILD-TYPE" 
                  TCGA-FP-7916                   TCGA-FP-7998 
  "AMP PEAK 24(19Q12) MUTATED" "AMP PEAK 24(19Q12) WILD-TYPE" 
                  TCGA-HJ-7597                   TCGA-IN-7806 
"AMP PEAK 24(19Q12) WILD-TYPE" "AMP PEAK 24(19Q12) WILD-TYPE" 
                  TCGA-IN-7808                   TCGA-IP-7968 
  "AMP PEAK 24(19Q12) MUTATED" "AMP PEAK 24(19Q12) WILD-TYPE" 
                  TCGA-B7-5816                   TCGA-B7-5818 
"AMP PEAK 24(19Q12) WILD-TYPE" "AMP PEAK 24(19Q12) WILD-TYPE" 
                  TCGA-BR-6452                   TCGA-BR-6455 
"AMP PEAK 24(19Q12) WILD-TYPE" "AMP PEAK 24(19Q12) WILD-TYPE" 
                  TCGA-BR-6457                   TCGA-BR-6458 
"AMP PEAK 24(19Q12) WILD-TYPE"   "AMP PEAK 24(19Q12) MUTATED" 
                  TCGA-BR-6563                   TCGA-BR-6564 
"AMP PEAK 24(19Q12) WILD-TYPE" "AMP PEAK 24(19Q12) WILD-TYPE" 
                  TCGA-BR-6565                   TCGA-BR-6566 
"AMP PEAK 24(19Q12) WILD-TYPE" "AMP PEAK 24(19Q12) WILD-TYPE" 
                  TCGA-BR-6705                   TCGA-BR-6706 
"AMP PEAK 24(19Q12) WILD-TYPE" "AMP PEAK 24(19Q12) WILD-TYPE" 
                  TCGA-BR-6707                   TCGA-BR-6709 
"AMP PEAK 24(19Q12) WILD-TYPE" "AMP PEAK 24(19Q12) WILD-TYPE" 
                  TCGA-BR-6710                   TCGA-BR-6801 
"AMP PEAK 24(19Q12) WILD-TYPE" "AMP PEAK 24(19Q12) WILD-TYPE" 
                  TCGA-BR-6802                   TCGA-BR-6803 
"AMP PEAK 24(19Q12) WILD-TYPE" "AMP PEAK 24(19Q12) WILD-TYPE" 
                  TCGA-BR-6852                   TCGA-BR-7196 
"AMP PEAK 24(19Q12) WILD-TYPE" "AMP PEAK 24(19Q12) WILD-TYPE" 
                  TCGA-BR-7197                   TCGA-BR-7703 
  "AMP PEAK 24(19Q12) MUTATED" "AMP PEAK 24(19Q12) WILD-TYPE" 
                  TCGA-BR-7704                   TCGA-BR-7707 
"AMP PEAK 24(19Q12) WILD-TYPE" "AMP PEAK 24(19Q12) WILD-TYPE" 
                  TCGA-BR-7715                   TCGA-BR-7716 
  "AMP PEAK 24(19Q12) MUTATED"   "AMP PEAK 24(19Q12) MUTATED" 
                  TCGA-BR-7717                   TCGA-BR-7722 
"AMP PEAK 24(19Q12) WILD-TYPE" "AMP PEAK 24(19Q12) WILD-TYPE" 
                  TCGA-BR-7723                   TCGA-BR-7851 
  "AMP PEAK 24(19Q12) MUTATED" "AMP PEAK 24(19Q12) WILD-TYPE" 
                  TCGA-BR-7901                   TCGA-BR-7957 
  "AMP PEAK 24(19Q12) MUTATED" "AMP PEAK 24(19Q12) WILD-TYPE" 
                  TCGA-BR-7958                   TCGA-BR-7959 
"AMP PEAK 24(19Q12) WILD-TYPE" "AMP PEAK 24(19Q12) WILD-TYPE" 
                  TCGA-BR-8059                   TCGA-BR-8060 
"AMP PEAK 24(19Q12) WILD-TYPE" "AMP PEAK 24(19Q12) WILD-TYPE" 
                  TCGA-BR-8077                   TCGA-BR-8078 
"AMP PEAK 24(19Q12) WILD-TYPE" "AMP PEAK 24(19Q12) WILD-TYPE" 
                  TCGA-BR-8080                   TCGA-BR-8081 
"AMP PEAK 24(19Q12) WILD-TYPE" "AMP PEAK 24(19Q12) WILD-TYPE" 
                  TCGA-BR-8284                   TCGA-BR-8285 
"AMP PEAK 24(19Q12) WILD-TYPE" "AMP PEAK 24(19Q12) WILD-TYPE" 
                  TCGA-BR-8286                   TCGA-BR-8289 
"AMP PEAK 24(19Q12) WILD-TYPE" "AMP PEAK 24(19Q12) WILD-TYPE" 
                  TCGA-BR-8291                   TCGA-BR-8295 
"AMP PEAK 24(19Q12) WILD-TYPE" "AMP PEAK 24(19Q12) WILD-TYPE" 
                  TCGA-BR-8296                   TCGA-BR-8297 
"AMP PEAK 24(19Q12) WILD-TYPE" "AMP PEAK 24(19Q12) WILD-TYPE" 
                  TCGA-CD-5798                   TCGA-CD-5799 
"AMP PEAK 24(19Q12) WILD-TYPE" "AMP PEAK 24(19Q12) WILD-TYPE" 
                  TCGA-CD-5800                   TCGA-CD-5801 
  "AMP PEAK 24(19Q12) MUTATED"   "AMP PEAK 24(19Q12) MUTATED" 
                  TCGA-CD-5802                   TCGA-CD-5803 
  "AMP PEAK 24(19Q12) MUTATED" "AMP PEAK 24(19Q12) WILD-TYPE" 
                  TCGA-CG-4300                   TCGA-CG-4301 
"AMP PEAK 24(19Q12) WILD-TYPE" "AMP PEAK 24(19Q12) WILD-TYPE" 
                  TCGA-CG-4304                   TCGA-CG-4305 
"AMP PEAK 24(19Q12) WILD-TYPE" "AMP PEAK 24(19Q12) WILD-TYPE" 
                  TCGA-CG-4306                   TCGA-CG-4436 
"AMP PEAK 24(19Q12) WILD-TYPE" "AMP PEAK 24(19Q12) WILD-TYPE" 
                  TCGA-CG-4437                   TCGA-CG-4438 
"AMP PEAK 24(19Q12) WILD-TYPE"   "AMP PEAK 24(19Q12) MUTATED" 
                  TCGA-CG-4440                   TCGA-CG-4441 
"AMP PEAK 24(19Q12) WILD-TYPE" "AMP PEAK 24(19Q12) WILD-TYPE" 
                  TCGA-CG-4443                   TCGA-CG-4444 
"AMP PEAK 24(19Q12) WILD-TYPE"   "AMP PEAK 24(19Q12) MUTATED" 
                  TCGA-CG-4449                   TCGA-CG-4455 
  "AMP PEAK 24(19Q12) MUTATED" "AMP PEAK 24(19Q12) WILD-TYPE" 
                  TCGA-CG-4460                   TCGA-CG-4462 
  "AMP PEAK 24(19Q12) MUTATED" "AMP PEAK 24(19Q12) WILD-TYPE" 
                  TCGA-CG-4465                   TCGA-CG-4466 
"AMP PEAK 24(19Q12) WILD-TYPE" "AMP PEAK 24(19Q12) WILD-TYPE" 
                  TCGA-CG-4469                   TCGA-CG-4472 
"AMP PEAK 24(19Q12) WILD-TYPE" "AMP PEAK 24(19Q12) WILD-TYPE" 
                  TCGA-CG-4474                   TCGA-CG-4477 
  "AMP PEAK 24(19Q12) MUTATED" "AMP PEAK 24(19Q12) WILD-TYPE" 
                  TCGA-CG-5716                   TCGA-CG-5717 
"AMP PEAK 24(19Q12) WILD-TYPE" "AMP PEAK 24(19Q12) WILD-TYPE" 
                  TCGA-CG-5718                   TCGA-CG-5719 
"AMP PEAK 24(19Q12) WILD-TYPE" "AMP PEAK 24(19Q12) WILD-TYPE" 
                  TCGA-CG-5720                   TCGA-CG-5721 
"AMP PEAK 24(19Q12) WILD-TYPE" "AMP PEAK 24(19Q12) WILD-TYPE" 
                  TCGA-CG-5722                   TCGA-CG-5723 
  "AMP PEAK 24(19Q12) MUTATED" "AMP PEAK 24(19Q12) WILD-TYPE" 
                  TCGA-CG-5724                   TCGA-CG-5725 
"AMP PEAK 24(19Q12) WILD-TYPE" "AMP PEAK 24(19Q12) WILD-TYPE" 
                  TCGA-CG-5726                   TCGA-CG-5727 
"AMP PEAK 24(19Q12) WILD-TYPE" "AMP PEAK 24(19Q12) WILD-TYPE" 
                  TCGA-CG-5728                   TCGA-CG-5730 
"AMP PEAK 24(19Q12) WILD-TYPE"   "AMP PEAK 24(19Q12) MUTATED" 
                  TCGA-CG-5732                   TCGA-CG-5733 
"AMP PEAK 24(19Q12) WILD-TYPE" "AMP PEAK 24(19Q12) WILD-TYPE" 
                  TCGA-CG-5734                   TCGA-D7-5577 
"AMP PEAK 24(19Q12) WILD-TYPE"   "AMP PEAK 24(19Q12) MUTATED" 
                  TCGA-D7-5578                   TCGA-D7-5579 
  "AMP PEAK 24(19Q12) MUTATED"   "AMP PEAK 24(19Q12) MUTATED" 
                  TCGA-D7-6518                   TCGA-D7-6519 
  "AMP PEAK 24(19Q12) MUTATED" "AMP PEAK 24(19Q12) WILD-TYPE" 
                  TCGA-D7-6520                   TCGA-D7-6521 
  "AMP PEAK 24(19Q12) MUTATED"   "AMP PEAK 24(19Q12) MUTATED" 
                  TCGA-D7-6522                   TCGA-D7-6524 
"AMP PEAK 24(19Q12) WILD-TYPE" "AMP PEAK 24(19Q12) WILD-TYPE" 
                  TCGA-D7-6525                   TCGA-D7-6526 
"AMP PEAK 24(19Q12) WILD-TYPE"   "AMP PEAK 24(19Q12) MUTATED" 
                  TCGA-D7-6527                   TCGA-D7-6528 
  "AMP PEAK 24(19Q12) MUTATED"   "AMP PEAK 24(19Q12) MUTATED" 
                  TCGA-D7-6815                   TCGA-D7-6817 
"AMP PEAK 24(19Q12) WILD-TYPE" "AMP PEAK 24(19Q12) WILD-TYPE" 
                  TCGA-D7-6818                   TCGA-D7-6820 
  "AMP PEAK 24(19Q12) MUTATED" "AMP PEAK 24(19Q12) WILD-TYPE" 
                  TCGA-D7-6822                   TCGA-EQ-5647 
  "AMP PEAK 24(19Q12) MUTATED"   "AMP PEAK 24(19Q12) MUTATED" 
                  TCGA-EQ-8122                   TCGA-F1-6177 
"AMP PEAK 24(19Q12) WILD-TYPE" "AMP PEAK 24(19Q12) WILD-TYPE" 
                  TCGA-F1-6874                   TCGA-F1-6875 
"AMP PEAK 24(19Q12) WILD-TYPE"   "AMP PEAK 24(19Q12) MUTATED" 
                  TCGA-FP-7735                   TCGA-FP-7829 
  "AMP PEAK 24(19Q12) MUTATED" "AMP PEAK 24(19Q12) WILD-TYPE" 
                  TCGA-FP-7916                   TCGA-FP-7998 
  "AMP PEAK 24(19Q12) MUTATED" "AMP PEAK 24(19Q12) WILD-TYPE" 
                  TCGA-HJ-7597                   TCGA-IN-7806 
"AMP PEAK 24(19Q12) WILD-TYPE" "AMP PEAK 24(19Q12) WILD-TYPE" 
                  TCGA-IN-7808                   TCGA-IP-7968 
  "AMP PEAK 24(19Q12) MUTATED" "AMP PEAK 24(19Q12) WILD-TYPE" 
                  TCGA-B7-5816                   TCGA-B7-5818 
"AMP PEAK 24(19Q12) WILD-TYPE" "AMP PEAK 24(19Q12) WILD-TYPE" 
                  TCGA-BR-6452                   TCGA-BR-6455 
"AMP PEAK 24(19Q12) WILD-TYPE" "AMP PEAK 24(19Q12) WILD-TYPE" 
                  TCGA-BR-6457                   TCGA-BR-6458 
"AMP PEAK 24(19Q12) WILD-TYPE"   "AMP PEAK 24(19Q12) MUTATED" 
                  TCGA-BR-6563                   TCGA-BR-6564 
"AMP PEAK 24(19Q12) WILD-TYPE" "AMP PEAK 24(19Q12) WILD-TYPE" 
                  TCGA-BR-6565                   TCGA-BR-6566 
"AMP PEAK 24(19Q12) WILD-TYPE" "AMP PEAK 24(19Q12) WILD-TYPE" 
                  TCGA-BR-6705                   TCGA-BR-6706 
"AMP PEAK 24(19Q12) WILD-TYPE" "AMP PEAK 24(19Q12) WILD-TYPE" 
                  TCGA-BR-6707                   TCGA-BR-6709 
"AMP PEAK 24(19Q12) WILD-TYPE" "AMP PEAK 24(19Q12) WILD-TYPE" 
                  TCGA-BR-6710                   TCGA-BR-6801 
"AMP PEAK 24(19Q12) WILD-TYPE" "AMP PEAK 24(19Q12) WILD-TYPE" 
                  TCGA-BR-6802                   TCGA-BR-6803 
"AMP PEAK 24(19Q12) WILD-TYPE" "AMP PEAK 24(19Q12) WILD-TYPE" 
                  TCGA-BR-6852                   TCGA-BR-7196 
"AMP PEAK 24(19Q12) WILD-TYPE" "AMP PEAK 24(19Q12) WILD-TYPE" 
                  TCGA-BR-7197                   TCGA-BR-7703 
  "AMP PEAK 24(19Q12) MUTATED" "AMP PEAK 24(19Q12) WILD-TYPE" 
                  TCGA-BR-7704                   TCGA-BR-7707 
"AMP PEAK 24(19Q12) WILD-TYPE" "AMP PEAK 24(19Q12) WILD-TYPE" 
                  TCGA-BR-7715                   TCGA-BR-7716 
  "AMP PEAK 24(19Q12) MUTATED"   "AMP PEAK 24(19Q12) MUTATED" 
                  TCGA-BR-7717                   TCGA-BR-7722 
"AMP PEAK 24(19Q12) WILD-TYPE" "AMP PEAK 24(19Q12) WILD-TYPE" 
                  TCGA-BR-7723                   TCGA-BR-7851 
  "AMP PEAK 24(19Q12) MUTATED" "AMP PEAK 24(19Q12) WILD-TYPE" 
                  TCGA-BR-7901                   TCGA-BR-7957 
  "AMP PEAK 24(19Q12) MUTATED" "AMP PEAK 24(19Q12) WILD-TYPE" 
                  TCGA-BR-7958                   TCGA-BR-7959 
"AMP PEAK 24(19Q12) WILD-TYPE" "AMP PEAK 24(19Q12) WILD-TYPE" 
                  TCGA-BR-8059                   TCGA-BR-8060 
"AMP PEAK 24(19Q12) WILD-TYPE" "AMP PEAK 24(19Q12) WILD-TYPE" 
                  TCGA-BR-8077                   TCGA-BR-8078 
"AMP PEAK 24(19Q12) WILD-TYPE" "AMP PEAK 24(19Q12) WILD-TYPE" 
                  TCGA-BR-8080                   TCGA-BR-8081 
"AMP PEAK 24(19Q12) WILD-TYPE" "AMP PEAK 24(19Q12) WILD-TYPE" 
                  TCGA-BR-8284                   TCGA-BR-8285 
"AMP PEAK 24(19Q12) WILD-TYPE" "AMP PEAK 24(19Q12) WILD-TYPE" 
                  TCGA-BR-8286                   TCGA-BR-8289 
"AMP PEAK 24(19Q12) WILD-TYPE" "AMP PEAK 24(19Q12) WILD-TYPE" 
                  TCGA-BR-8291                   TCGA-BR-8295 
"AMP PEAK 24(19Q12) WILD-TYPE" "AMP PEAK 24(19Q12) WILD-TYPE" 
                  TCGA-BR-8296                   TCGA-BR-8297 
"AMP PEAK 24(19Q12) WILD-TYPE" "AMP PEAK 24(19Q12) WILD-TYPE" 
                  TCGA-CD-5798                   TCGA-CD-5799 
"AMP PEAK 24(19Q12) WILD-TYPE" "AMP PEAK 24(19Q12) WILD-TYPE" 
                  TCGA-CD-5800                   TCGA-CD-5801 
  "AMP PEAK 24(19Q12) MUTATED"   "AMP PEAK 24(19Q12) MUTATED" 
                  TCGA-CD-5802                   TCGA-CD-5803 
  "AMP PEAK 24(19Q12) MUTATED" "AMP PEAK 24(19Q12) WILD-TYPE" 
                  TCGA-CG-4300                   TCGA-CG-4301 
"AMP PEAK 24(19Q12) WILD-TYPE" "AMP PEAK 24(19Q12) WILD-TYPE" 
                  TCGA-CG-4304                   TCGA-CG-4305 
"AMP PEAK 24(19Q12) WILD-TYPE" "AMP PEAK 24(19Q12) WILD-TYPE" 
                  TCGA-CG-4306                   TCGA-CG-4436 
"AMP PEAK 24(19Q12) WILD-TYPE" "AMP PEAK 24(19Q12) WILD-TYPE" 
                  TCGA-CG-4437                   TCGA-CG-4438 
"AMP PEAK 24(19Q12) WILD-TYPE"   "AMP PEAK 24(19Q12) MUTATED" 
                  TCGA-CG-4440                   TCGA-CG-4441 
"AMP PEAK 24(19Q12) WILD-TYPE" "AMP PEAK 24(19Q12) WILD-TYPE" 
                  TCGA-CG-4443                   TCGA-CG-4444 
"AMP PEAK 24(19Q12) WILD-TYPE"   "AMP PEAK 24(19Q12) MUTATED" 
                  TCGA-CG-4449                   TCGA-CG-4455 
  "AMP PEAK 24(19Q12) MUTATED" "AMP PEAK 24(19Q12) WILD-TYPE" 
                  TCGA-CG-4460                   TCGA-CG-4462 
  "AMP PEAK 24(19Q12) MUTATED" "AMP PEAK 24(19Q12) WILD-TYPE" 
                  TCGA-CG-4465                   TCGA-CG-4466 
"AMP PEAK 24(19Q12) WILD-TYPE" "AMP PEAK 24(19Q12) WILD-TYPE" 
                  TCGA-CG-4469                   TCGA-CG-4472 
"AMP PEAK 24(19Q12) WILD-TYPE" "AMP PEAK 24(19Q12) WILD-TYPE" 
                  TCGA-CG-4474                   TCGA-CG-4477 
  "AMP PEAK 24(19Q12) MUTATED" "AMP PEAK 24(19Q12) WILD-TYPE" 
                  TCGA-CG-5716                   TCGA-CG-5717 
"AMP PEAK 24(19Q12) WILD-TYPE" "AMP PEAK 24(19Q12) WILD-TYPE" 
                  TCGA-CG-5718                   TCGA-CG-5719 
"AMP PEAK 24(19Q12) WILD-TYPE" "AMP PEAK 24(19Q12) WILD-TYPE" 
                  TCGA-CG-5720                   TCGA-CG-5721 
"AMP PEAK 24(19Q12) WILD-TYPE" "AMP PEAK 24(19Q12) WILD-TYPE" 
                  TCGA-CG-5722                   TCGA-CG-5723 
  "AMP PEAK 24(19Q12) MUTATED" "AMP PEAK 24(19Q12) WILD-TYPE" 
                  TCGA-CG-5724                   TCGA-CG-5725 
"AMP PEAK 24(19Q12) WILD-TYPE" "AMP PEAK 24(19Q12) WILD-TYPE" 
                  TCGA-CG-5726                   TCGA-CG-5727 
"AMP PEAK 24(19Q12) WILD-TYPE" "AMP PEAK 24(19Q12) WILD-TYPE" 
                  TCGA-CG-5728                   TCGA-CG-5730 
"AMP PEAK 24(19Q12) WILD-TYPE"   "AMP PEAK 24(19Q12) MUTATED" 
                  TCGA-CG-5732                   TCGA-CG-5733 
"AMP PEAK 24(19Q12) WILD-TYPE" "AMP PEAK 24(19Q12) WILD-TYPE" 
                  TCGA-CG-5734                   TCGA-D7-5577 
"AMP PEAK 24(19Q12) WILD-TYPE"   "AMP PEAK 24(19Q12) MUTATED" 
                  TCGA-D7-5578                   TCGA-D7-5579 
  "AMP PEAK 24(19Q12) MUTATED"   "AMP PEAK 24(19Q12) MUTATED" 
                  TCGA-D7-6518                   TCGA-D7-6519 
  "AMP PEAK 24(19Q12) MUTATED" "AMP PEAK 24(19Q12) WILD-TYPE" 
                  TCGA-D7-6520                   TCGA-D7-6521 
  "AMP PEAK 24(19Q12) MUTATED"   "AMP PEAK 24(19Q12) MUTATED" 
                  TCGA-D7-6522                   TCGA-D7-6524 
"AMP PEAK 24(19Q12) WILD-TYPE" "AMP PEAK 24(19Q12) WILD-TYPE" 
                  TCGA-D7-6525                   TCGA-D7-6526 
"AMP PEAK 24(19Q12) WILD-TYPE"   "AMP PEAK 24(19Q12) MUTATED" 
                  TCGA-D7-6527                   TCGA-D7-6528 
  "AMP PEAK 24(19Q12) MUTATED"   "AMP PEAK 24(19Q12) MUTATED" 
                  TCGA-D7-6815                   TCGA-D7-6817 
"AMP PEAK 24(19Q12) WILD-TYPE" "AMP PEAK 24(19Q12) WILD-TYPE" 
                  TCGA-D7-6818                   TCGA-D7-6820 
  "AMP PEAK 24(19Q12) MUTATED" "AMP PEAK 24(19Q12) WILD-TYPE" 
                  TCGA-D7-6822                   TCGA-EQ-5647 
  "AMP PEAK 24(19Q12) MUTATED"   "AMP PEAK 24(19Q12) MUTATED" 
                  TCGA-EQ-8122                   TCGA-F1-6177 
"AMP PEAK 24(19Q12) WILD-TYPE" "AMP PEAK 24(19Q12) WILD-TYPE" 
                  TCGA-F1-6874                   TCGA-F1-6875 
"AMP PEAK 24(19Q12) WILD-TYPE"   "AMP PEAK 24(19Q12) MUTATED" 
                  TCGA-FP-7735                   TCGA-FP-7829 
  "AMP PEAK 24(19Q12) MUTATED" "AMP PEAK 24(19Q12) WILD-TYPE" 
                  TCGA-FP-7916                   TCGA-FP-7998 
  "AMP PEAK 24(19Q12) MUTATED" "AMP PEAK 24(19Q12) WILD-TYPE" 
                  TCGA-HJ-7597                   TCGA-IN-7806 
"AMP PEAK 24(19Q12) WILD-TYPE" "AMP PEAK 24(19Q12) WILD-TYPE" 
                  TCGA-IN-7808                   TCGA-IP-7968 
  "AMP PEAK 24(19Q12) MUTATED" "AMP PEAK 24(19Q12) WILD-TYPE" 
[1] "hr=" "2.5"
D24V2, continuous
D24V3, binary
[1] "tbl2"
                              cls
clus                           [,1] [,2]
  AMP PEAK 24(19Q12) MUTATED     16   28
  AMP PEAK 24(19Q12) WILD-TYPE   49   68
        clus
vv       AMP PEAK 24(19Q12) MUTATED AMP PEAK 24(19Q12) WILD-TYPE
  FEMALE                         16                           49
  MALE                           28                           68
D24V4, multiclass
D24V5, multiclass
    clus
vv   AMP PEAK 24(19Q12) MUTATED AMP PEAK 24(19Q12) WILD-TYPE
  T1                          0                            6
  T2                         16                           37
  T3                         19                           40
  T4                          6                           27
D24V6, multiclass
    clus
vv   AMP PEAK 24(19Q12) MUTATED AMP PEAK 24(19Q12) WILD-TYPE
  N0                         10                           40
  N1                         13                           44
  N2                         10                           14
  N3                          7                           12
D24V7, multiclass
    clus
vv   AMP PEAK 24(19Q12) MUTATED AMP PEAK 24(19Q12) WILD-TYPE
  M0                         34                           98
  M1                          6                           12
  MX                          4                            7
D24V8, multiclass
     clus
vv    AMP PEAK 24(19Q12) MUTATED AMP PEAK 24(19Q12) WILD-TYPE
  I                            5                           20
  II                          13                           30
  III                         11                           37
  IV                          10                           19
D24V9, binary
[1] "tbl2"
                              cls
clus                           [,1] [,2]
  AMP PEAK 24(19Q12) MUTATED     40    4
  AMP PEAK 24(19Q12) WILD-TYPE  116    1
     clus
vv    AMP PEAK 24(19Q12) MUTATED AMP PEAK 24(19Q12) WILD-TYPE
  NO                           4                            1
  YES                         40                          116

Clustering(25) Variable = Amp Peak 25(20q13.2) mutation analysis
D25V1, survival
                    TCGA-B7-5816                     TCGA-B7-5818 
"AMP PEAK 25(20Q13.2) WILD-TYPE" "AMP PEAK 25(20Q13.2) WILD-TYPE" 
                    TCGA-BR-6452                     TCGA-BR-6455 
"AMP PEAK 25(20Q13.2) WILD-TYPE"   "AMP PEAK 25(20Q13.2) MUTATED" 
                    TCGA-BR-6457                     TCGA-BR-6458 
  "AMP PEAK 25(20Q13.2) MUTATED"   "AMP PEAK 25(20Q13.2) MUTATED" 
                    TCGA-BR-6563                     TCGA-BR-6564 
  "AMP PEAK 25(20Q13.2) MUTATED"   "AMP PEAK 25(20Q13.2) MUTATED" 
                    TCGA-BR-6565                     TCGA-BR-6566 
  "AMP PEAK 25(20Q13.2) MUTATED" "AMP PEAK 25(20Q13.2) WILD-TYPE" 
                    TCGA-BR-6705                     TCGA-BR-6706 
"AMP PEAK 25(20Q13.2) WILD-TYPE"   "AMP PEAK 25(20Q13.2) MUTATED" 
                    TCGA-BR-6707                     TCGA-BR-6709 
  "AMP PEAK 25(20Q13.2) MUTATED" "AMP PEAK 25(20Q13.2) WILD-TYPE" 
                    TCGA-BR-6710                     TCGA-BR-6801 
"AMP PEAK 25(20Q13.2) WILD-TYPE"   "AMP PEAK 25(20Q13.2) MUTATED" 
                    TCGA-BR-6802                     TCGA-BR-6803 
"AMP PEAK 25(20Q13.2) WILD-TYPE" "AMP PEAK 25(20Q13.2) WILD-TYPE" 
                    TCGA-BR-6852                     TCGA-BR-7196 
  "AMP PEAK 25(20Q13.2) MUTATED"   "AMP PEAK 25(20Q13.2) MUTATED" 
                    TCGA-BR-7197                     TCGA-BR-7703 
  "AMP PEAK 25(20Q13.2) MUTATED" "AMP PEAK 25(20Q13.2) WILD-TYPE" 
                    TCGA-BR-7704                     TCGA-BR-7707 
  "AMP PEAK 25(20Q13.2) MUTATED" "AMP PEAK 25(20Q13.2) WILD-TYPE" 
                    TCGA-BR-7715                     TCGA-BR-7716 
  "AMP PEAK 25(20Q13.2) MUTATED"   "AMP PEAK 25(20Q13.2) MUTATED" 
                    TCGA-BR-7717                     TCGA-BR-7722 
  "AMP PEAK 25(20Q13.2) MUTATED"   "AMP PEAK 25(20Q13.2) MUTATED" 
                    TCGA-BR-7723                     TCGA-BR-7851 
  "AMP PEAK 25(20Q13.2) MUTATED" "AMP PEAK 25(20Q13.2) WILD-TYPE" 
                    TCGA-BR-7901                     TCGA-BR-7957 
  "AMP PEAK 25(20Q13.2) MUTATED" "AMP PEAK 25(20Q13.2) WILD-TYPE" 
                    TCGA-BR-7958                     TCGA-BR-7959 
"AMP PEAK 25(20Q13.2) WILD-TYPE" "AMP PEAK 25(20Q13.2) WILD-TYPE" 
                    TCGA-BR-8059                     TCGA-BR-8060 
"AMP PEAK 25(20Q13.2) WILD-TYPE" "AMP PEAK 25(20Q13.2) WILD-TYPE" 
                    TCGA-BR-8077                     TCGA-BR-8078 
"AMP PEAK 25(20Q13.2) WILD-TYPE" "AMP PEAK 25(20Q13.2) WILD-TYPE" 
                    TCGA-BR-8080                     TCGA-BR-8081 
"AMP PEAK 25(20Q13.2) WILD-TYPE" "AMP PEAK 25(20Q13.2) WILD-TYPE" 
                    TCGA-BR-8284                     TCGA-BR-8285 
"AMP PEAK 25(20Q13.2) WILD-TYPE" "AMP PEAK 25(20Q13.2) WILD-TYPE" 
                    TCGA-BR-8286                     TCGA-BR-8289 
"AMP PEAK 25(20Q13.2) WILD-TYPE" "AMP PEAK 25(20Q13.2) WILD-TYPE" 
                    TCGA-BR-8291                     TCGA-BR-8295 
"AMP PEAK 25(20Q13.2) WILD-TYPE" "AMP PEAK 25(20Q13.2) WILD-TYPE" 
                    TCGA-BR-8296                     TCGA-BR-8297 
"AMP PEAK 25(20Q13.2) WILD-TYPE" "AMP PEAK 25(20Q13.2) WILD-TYPE" 
                    TCGA-CD-5798                     TCGA-CD-5799 
"AMP PEAK 25(20Q13.2) WILD-TYPE"   "AMP PEAK 25(20Q13.2) MUTATED" 
                    TCGA-CD-5800                     TCGA-CD-5801 
  "AMP PEAK 25(20Q13.2) MUTATED"   "AMP PEAK 25(20Q13.2) MUTATED" 
                    TCGA-CD-5802                     TCGA-CD-5803 
"AMP PEAK 25(20Q13.2) WILD-TYPE" "AMP PEAK 25(20Q13.2) WILD-TYPE" 
                    TCGA-CG-4300                     TCGA-CG-4301 
  "AMP PEAK 25(20Q13.2) MUTATED"   "AMP PEAK 25(20Q13.2) MUTATED" 
                    TCGA-CG-4304                     TCGA-CG-4305 
  "AMP PEAK 25(20Q13.2) MUTATED"   "AMP PEAK 25(20Q13.2) MUTATED" 
                    TCGA-CG-4306                     TCGA-CG-4436 
"AMP PEAK 25(20Q13.2) WILD-TYPE"   "AMP PEAK 25(20Q13.2) MUTATED" 
                    TCGA-CG-4437                     TCGA-CG-4438 
  "AMP PEAK 25(20Q13.2) MUTATED"   "AMP PEAK 25(20Q13.2) MUTATED" 
                    TCGA-CG-4440                     TCGA-CG-4441 
  "AMP PEAK 25(20Q13.2) MUTATED"   "AMP PEAK 25(20Q13.2) MUTATED" 
                    TCGA-CG-4443                     TCGA-CG-4444 
  "AMP PEAK 25(20Q13.2) MUTATED"   "AMP PEAK 25(20Q13.2) MUTATED" 
                    TCGA-CG-4449                     TCGA-CG-4455 
  "AMP PEAK 25(20Q13.2) MUTATED"   "AMP PEAK 25(20Q13.2) MUTATED" 
                    TCGA-CG-4460                     TCGA-CG-4462 
  "AMP PEAK 25(20Q13.2) MUTATED" "AMP PEAK 25(20Q13.2) WILD-TYPE" 
                    TCGA-CG-4465                     TCGA-CG-4466 
"AMP PEAK 25(20Q13.2) WILD-TYPE"   "AMP PEAK 25(20Q13.2) MUTATED" 
                    TCGA-CG-4469                     TCGA-CG-4472 
  "AMP PEAK 25(20Q13.2) MUTATED"   "AMP PEAK 25(20Q13.2) MUTATED" 
                    TCGA-CG-4474                     TCGA-CG-4477 
"AMP PEAK 25(20Q13.2) WILD-TYPE" "AMP PEAK 25(20Q13.2) WILD-TYPE" 
                    TCGA-CG-5716                     TCGA-CG-5717 
"AMP PEAK 25(20Q13.2) WILD-TYPE" "AMP PEAK 25(20Q13.2) WILD-TYPE" 
                    TCGA-CG-5718                     TCGA-CG-5719 
  "AMP PEAK 25(20Q13.2) MUTATED"   "AMP PEAK 25(20Q13.2) MUTATED" 
                    TCGA-CG-5720                     TCGA-CG-5721 
"AMP PEAK 25(20Q13.2) WILD-TYPE" "AMP PEAK 25(20Q13.2) WILD-TYPE" 
                    TCGA-CG-5722                     TCGA-CG-5723 
  "AMP PEAK 25(20Q13.2) MUTATED" "AMP PEAK 25(20Q13.2) WILD-TYPE" 
                    TCGA-CG-5724                     TCGA-CG-5725 
  "AMP PEAK 25(20Q13.2) MUTATED"   "AMP PEAK 25(20Q13.2) MUTATED" 
                    TCGA-CG-5726                     TCGA-CG-5727 
  "AMP PEAK 25(20Q13.2) MUTATED"   "AMP PEAK 25(20Q13.2) MUTATED" 
                    TCGA-CG-5728                     TCGA-CG-5730 
"AMP PEAK 25(20Q13.2) WILD-TYPE"   "AMP PEAK 25(20Q13.2) MUTATED" 
                    TCGA-CG-5732                     TCGA-CG-5733 
  "AMP PEAK 25(20Q13.2) MUTATED" "AMP PEAK 25(20Q13.2) WILD-TYPE" 
                    TCGA-CG-5734                     TCGA-D7-5577 
  "AMP PEAK 25(20Q13.2) MUTATED"   "AMP PEAK 25(20Q13.2) MUTATED" 
                    TCGA-D7-5578                     TCGA-D7-5579 
  "AMP PEAK 25(20Q13.2) MUTATED"   "AMP PEAK 25(20Q13.2) MUTATED" 
                    TCGA-D7-6518                     TCGA-D7-6519 
  "AMP PEAK 25(20Q13.2) MUTATED"   "AMP PEAK 25(20Q13.2) MUTATED" 
                    TCGA-D7-6520                     TCGA-D7-6521 
  "AMP PEAK 25(20Q13.2) MUTATED"   "AMP PEAK 25(20Q13.2) MUTATED" 
                    TCGA-D7-6522                     TCGA-D7-6524 
"AMP PEAK 25(20Q13.2) WILD-TYPE" "AMP PEAK 25(20Q13.2) WILD-TYPE" 
                    TCGA-D7-6525                     TCGA-D7-6526 
  "AMP PEAK 25(20Q13.2) MUTATED"   "AMP PEAK 25(20Q13.2) MUTATED" 
                    TCGA-D7-6527                     TCGA-D7-6528 
  "AMP PEAK 25(20Q13.2) MUTATED"   "AMP PEAK 25(20Q13.2) MUTATED" 
                    TCGA-D7-6815                     TCGA-D7-6817 
  "AMP PEAK 25(20Q13.2) MUTATED"   "AMP PEAK 25(20Q13.2) MUTATED" 
                    TCGA-D7-6818                     TCGA-D7-6820 
"AMP PEAK 25(20Q13.2) WILD-TYPE"   "AMP PEAK 25(20Q13.2) MUTATED" 
                    TCGA-D7-6822                     TCGA-EQ-5647 
  "AMP PEAK 25(20Q13.2) MUTATED"   "AMP PEAK 25(20Q13.2) MUTATED" 
                    TCGA-EQ-8122                     TCGA-F1-6177 
"AMP PEAK 25(20Q13.2) WILD-TYPE" "AMP PEAK 25(20Q13.2) WILD-TYPE" 
                    TCGA-F1-6874                     TCGA-F1-6875 
  "AMP PEAK 25(20Q13.2) MUTATED"   "AMP PEAK 25(20Q13.2) MUTATED" 
                    TCGA-FP-7735                     TCGA-FP-7829 
  "AMP PEAK 25(20Q13.2) MUTATED"   "AMP PEAK 25(20Q13.2) MUTATED" 
                    TCGA-FP-7916                     TCGA-FP-7998 
  "AMP PEAK 25(20Q13.2) MUTATED"   "AMP PEAK 25(20Q13.2) MUTATED" 
                    TCGA-HJ-7597                     TCGA-IN-7806 
  "AMP PEAK 25(20Q13.2) MUTATED"   "AMP PEAK 25(20Q13.2) MUTATED" 
                    TCGA-IN-7808                     TCGA-IP-7968 
  "AMP PEAK 25(20Q13.2) MUTATED"   "AMP PEAK 25(20Q13.2) MUTATED" 
                    TCGA-B7-5816                     TCGA-B7-5818 
"AMP PEAK 25(20Q13.2) WILD-TYPE" "AMP PEAK 25(20Q13.2) WILD-TYPE" 
                    TCGA-BR-6452                     TCGA-BR-6455 
"AMP PEAK 25(20Q13.2) WILD-TYPE"   "AMP PEAK 25(20Q13.2) MUTATED" 
                    TCGA-BR-6457                     TCGA-BR-6458 
  "AMP PEAK 25(20Q13.2) MUTATED"   "AMP PEAK 25(20Q13.2) MUTATED" 
                    TCGA-BR-6563                     TCGA-BR-6564 
  "AMP PEAK 25(20Q13.2) MUTATED"   "AMP PEAK 25(20Q13.2) MUTATED" 
                    TCGA-BR-6565                     TCGA-BR-6566 
  "AMP PEAK 25(20Q13.2) MUTATED" "AMP PEAK 25(20Q13.2) WILD-TYPE" 
                    TCGA-BR-6705                     TCGA-BR-6706 
"AMP PEAK 25(20Q13.2) WILD-TYPE"   "AMP PEAK 25(20Q13.2) MUTATED" 
                    TCGA-BR-6707                     TCGA-BR-6709 
  "AMP PEAK 25(20Q13.2) MUTATED" "AMP PEAK 25(20Q13.2) WILD-TYPE" 
                    TCGA-BR-6710                     TCGA-BR-6801 
"AMP PEAK 25(20Q13.2) WILD-TYPE"   "AMP PEAK 25(20Q13.2) MUTATED" 
                    TCGA-BR-6802                     TCGA-BR-6803 
"AMP PEAK 25(20Q13.2) WILD-TYPE" "AMP PEAK 25(20Q13.2) WILD-TYPE" 
                    TCGA-BR-6852                     TCGA-BR-7196 
  "AMP PEAK 25(20Q13.2) MUTATED"   "AMP PEAK 25(20Q13.2) MUTATED" 
                    TCGA-BR-7197                     TCGA-BR-7703 
  "AMP PEAK 25(20Q13.2) MUTATED" "AMP PEAK 25(20Q13.2) WILD-TYPE" 
                    TCGA-BR-7704                     TCGA-BR-7707 
  "AMP PEAK 25(20Q13.2) MUTATED" "AMP PEAK 25(20Q13.2) WILD-TYPE" 
                    TCGA-BR-7715                     TCGA-BR-7716 
  "AMP PEAK 25(20Q13.2) MUTATED"   "AMP PEAK 25(20Q13.2) MUTATED" 
                    TCGA-BR-7717                     TCGA-BR-7722 
  "AMP PEAK 25(20Q13.2) MUTATED"   "AMP PEAK 25(20Q13.2) MUTATED" 
                    TCGA-BR-7723                     TCGA-BR-7851 
  "AMP PEAK 25(20Q13.2) MUTATED" "AMP PEAK 25(20Q13.2) WILD-TYPE" 
                    TCGA-BR-7901                     TCGA-BR-7957 
  "AMP PEAK 25(20Q13.2) MUTATED" "AMP PEAK 25(20Q13.2) WILD-TYPE" 
                    TCGA-BR-7958                     TCGA-BR-7959 
"AMP PEAK 25(20Q13.2) WILD-TYPE" "AMP PEAK 25(20Q13.2) WILD-TYPE" 
                    TCGA-BR-8059                     TCGA-BR-8060 
"AMP PEAK 25(20Q13.2) WILD-TYPE" "AMP PEAK 25(20Q13.2) WILD-TYPE" 
                    TCGA-BR-8077                     TCGA-BR-8078 
"AMP PEAK 25(20Q13.2) WILD-TYPE" "AMP PEAK 25(20Q13.2) WILD-TYPE" 
                    TCGA-BR-8080                     TCGA-BR-8081 
"AMP PEAK 25(20Q13.2) WILD-TYPE" "AMP PEAK 25(20Q13.2) WILD-TYPE" 
                    TCGA-BR-8284                     TCGA-BR-8285 
"AMP PEAK 25(20Q13.2) WILD-TYPE" "AMP PEAK 25(20Q13.2) WILD-TYPE" 
                    TCGA-BR-8286                     TCGA-BR-8289 
"AMP PEAK 25(20Q13.2) WILD-TYPE" "AMP PEAK 25(20Q13.2) WILD-TYPE" 
                    TCGA-BR-8291                     TCGA-BR-8295 
"AMP PEAK 25(20Q13.2) WILD-TYPE" "AMP PEAK 25(20Q13.2) WILD-TYPE" 
                    TCGA-BR-8296                     TCGA-BR-8297 
"AMP PEAK 25(20Q13.2) WILD-TYPE" "AMP PEAK 25(20Q13.2) WILD-TYPE" 
                    TCGA-CD-5798                     TCGA-CD-5799 
"AMP PEAK 25(20Q13.2) WILD-TYPE"   "AMP PEAK 25(20Q13.2) MUTATED" 
                    TCGA-CD-5800                     TCGA-CD-5801 
  "AMP PEAK 25(20Q13.2) MUTATED"   "AMP PEAK 25(20Q13.2) MUTATED" 
                    TCGA-CD-5802                     TCGA-CD-5803 
"AMP PEAK 25(20Q13.2) WILD-TYPE" "AMP PEAK 25(20Q13.2) WILD-TYPE" 
                    TCGA-CG-4300                     TCGA-CG-4301 
  "AMP PEAK 25(20Q13.2) MUTATED"   "AMP PEAK 25(20Q13.2) MUTATED" 
                    TCGA-CG-4304                     TCGA-CG-4305 
  "AMP PEAK 25(20Q13.2) MUTATED"   "AMP PEAK 25(20Q13.2) MUTATED" 
                    TCGA-CG-4306                     TCGA-CG-4436 
"AMP PEAK 25(20Q13.2) WILD-TYPE"   "AMP PEAK 25(20Q13.2) MUTATED" 
                    TCGA-CG-4437                     TCGA-CG-4438 
  "AMP PEAK 25(20Q13.2) MUTATED"   "AMP PEAK 25(20Q13.2) MUTATED" 
                    TCGA-CG-4440                     TCGA-CG-4441 
  "AMP PEAK 25(20Q13.2) MUTATED"   "AMP PEAK 25(20Q13.2) MUTATED" 
                    TCGA-CG-4443                     TCGA-CG-4444 
  "AMP PEAK 25(20Q13.2) MUTATED"   "AMP PEAK 25(20Q13.2) MUTATED" 
                    TCGA-CG-4449                     TCGA-CG-4455 
  "AMP PEAK 25(20Q13.2) MUTATED"   "AMP PEAK 25(20Q13.2) MUTATED" 
                    TCGA-CG-4460                     TCGA-CG-4462 
  "AMP PEAK 25(20Q13.2) MUTATED" "AMP PEAK 25(20Q13.2) WILD-TYPE" 
                    TCGA-CG-4465                     TCGA-CG-4466 
"AMP PEAK 25(20Q13.2) WILD-TYPE"   "AMP PEAK 25(20Q13.2) MUTATED" 
                    TCGA-CG-4469                     TCGA-CG-4472 
  "AMP PEAK 25(20Q13.2) MUTATED"   "AMP PEAK 25(20Q13.2) MUTATED" 
                    TCGA-CG-4474                     TCGA-CG-4477 
"AMP PEAK 25(20Q13.2) WILD-TYPE" "AMP PEAK 25(20Q13.2) WILD-TYPE" 
                    TCGA-CG-5716                     TCGA-CG-5717 
"AMP PEAK 25(20Q13.2) WILD-TYPE" "AMP PEAK 25(20Q13.2) WILD-TYPE" 
                    TCGA-CG-5718                     TCGA-CG-5719 
  "AMP PEAK 25(20Q13.2) MUTATED"   "AMP PEAK 25(20Q13.2) MUTATED" 
                    TCGA-CG-5720                     TCGA-CG-5721 
"AMP PEAK 25(20Q13.2) WILD-TYPE" "AMP PEAK 25(20Q13.2) WILD-TYPE" 
                    TCGA-CG-5722                     TCGA-CG-5723 
  "AMP PEAK 25(20Q13.2) MUTATED" "AMP PEAK 25(20Q13.2) WILD-TYPE" 
                    TCGA-CG-5724                     TCGA-CG-5725 
  "AMP PEAK 25(20Q13.2) MUTATED"   "AMP PEAK 25(20Q13.2) MUTATED" 
                    TCGA-CG-5726                     TCGA-CG-5727 
  "AMP PEAK 25(20Q13.2) MUTATED"   "AMP PEAK 25(20Q13.2) MUTATED" 
                    TCGA-CG-5728                     TCGA-CG-5730 
"AMP PEAK 25(20Q13.2) WILD-TYPE"   "AMP PEAK 25(20Q13.2) MUTATED" 
                    TCGA-CG-5732                     TCGA-CG-5733 
  "AMP PEAK 25(20Q13.2) MUTATED" "AMP PEAK 25(20Q13.2) WILD-TYPE" 
                    TCGA-CG-5734                     TCGA-D7-5577 
  "AMP PEAK 25(20Q13.2) MUTATED"   "AMP PEAK 25(20Q13.2) MUTATED" 
                    TCGA-D7-5578                     TCGA-D7-5579 
  "AMP PEAK 25(20Q13.2) MUTATED"   "AMP PEAK 25(20Q13.2) MUTATED" 
                    TCGA-D7-6518                     TCGA-D7-6519 
  "AMP PEAK 25(20Q13.2) MUTATED"   "AMP PEAK 25(20Q13.2) MUTATED" 
                    TCGA-D7-6520                     TCGA-D7-6521 
  "AMP PEAK 25(20Q13.2) MUTATED"   "AMP PEAK 25(20Q13.2) MUTATED" 
                    TCGA-D7-6522                     TCGA-D7-6524 
"AMP PEAK 25(20Q13.2) WILD-TYPE" "AMP PEAK 25(20Q13.2) WILD-TYPE" 
                    TCGA-D7-6525                     TCGA-D7-6526 
  "AMP PEAK 25(20Q13.2) MUTATED"   "AMP PEAK 25(20Q13.2) MUTATED" 
                    TCGA-D7-6527                     TCGA-D7-6528 
  "AMP PEAK 25(20Q13.2) MUTATED"   "AMP PEAK 25(20Q13.2) MUTATED" 
                    TCGA-D7-6815                     TCGA-D7-6817 
  "AMP PEAK 25(20Q13.2) MUTATED"   "AMP PEAK 25(20Q13.2) MUTATED" 
                    TCGA-D7-6818                     TCGA-D7-6820 
"AMP PEAK 25(20Q13.2) WILD-TYPE"   "AMP PEAK 25(20Q13.2) MUTATED" 
                    TCGA-D7-6822                     TCGA-EQ-5647 
  "AMP PEAK 25(20Q13.2) MUTATED"   "AMP PEAK 25(20Q13.2) MUTATED" 
                    TCGA-EQ-8122                     TCGA-F1-6177 
"AMP PEAK 25(20Q13.2) WILD-TYPE" "AMP PEAK 25(20Q13.2) WILD-TYPE" 
                    TCGA-F1-6874                     TCGA-F1-6875 
  "AMP PEAK 25(20Q13.2) MUTATED"   "AMP PEAK 25(20Q13.2) MUTATED" 
                    TCGA-FP-7735                     TCGA-FP-7829 
  "AMP PEAK 25(20Q13.2) MUTATED"   "AMP PEAK 25(20Q13.2) MUTATED" 
                    TCGA-FP-7916                     TCGA-FP-7998 
  "AMP PEAK 25(20Q13.2) MUTATED"   "AMP PEAK 25(20Q13.2) MUTATED" 
                    TCGA-HJ-7597                     TCGA-IN-7806 
  "AMP PEAK 25(20Q13.2) MUTATED"   "AMP PEAK 25(20Q13.2) MUTATED" 
                    TCGA-IN-7808                     TCGA-IP-7968 
  "AMP PEAK 25(20Q13.2) MUTATED"   "AMP PEAK 25(20Q13.2) MUTATED" 
                    TCGA-B7-5816                     TCGA-B7-5818 
"AMP PEAK 25(20Q13.2) WILD-TYPE" "AMP PEAK 25(20Q13.2) WILD-TYPE" 
                    TCGA-BR-6452                     TCGA-BR-6455 
"AMP PEAK 25(20Q13.2) WILD-TYPE"   "AMP PEAK 25(20Q13.2) MUTATED" 
                    TCGA-BR-6457                     TCGA-BR-6458 
  "AMP PEAK 25(20Q13.2) MUTATED"   "AMP PEAK 25(20Q13.2) MUTATED" 
                    TCGA-BR-6563                     TCGA-BR-6564 
  "AMP PEAK 25(20Q13.2) MUTATED"   "AMP PEAK 25(20Q13.2) MUTATED" 
                    TCGA-BR-6565                     TCGA-BR-6566 
  "AMP PEAK 25(20Q13.2) MUTATED" "AMP PEAK 25(20Q13.2) WILD-TYPE" 
                    TCGA-BR-6705                     TCGA-BR-6706 
"AMP PEAK 25(20Q13.2) WILD-TYPE"   "AMP PEAK 25(20Q13.2) MUTATED" 
                    TCGA-BR-6707                     TCGA-BR-6709 
  "AMP PEAK 25(20Q13.2) MUTATED" "AMP PEAK 25(20Q13.2) WILD-TYPE" 
                    TCGA-BR-6710                     TCGA-BR-6801 
"AMP PEAK 25(20Q13.2) WILD-TYPE"   "AMP PEAK 25(20Q13.2) MUTATED" 
                    TCGA-BR-6802                     TCGA-BR-6803 
"AMP PEAK 25(20Q13.2) WILD-TYPE" "AMP PEAK 25(20Q13.2) WILD-TYPE" 
                    TCGA-BR-6852                     TCGA-BR-7196 
  "AMP PEAK 25(20Q13.2) MUTATED"   "AMP PEAK 25(20Q13.2) MUTATED" 
                    TCGA-BR-7197                     TCGA-BR-7703 
  "AMP PEAK 25(20Q13.2) MUTATED" "AMP PEAK 25(20Q13.2) WILD-TYPE" 
                    TCGA-BR-7704                     TCGA-BR-7707 
  "AMP PEAK 25(20Q13.2) MUTATED" "AMP PEAK 25(20Q13.2) WILD-TYPE" 
                    TCGA-BR-7715                     TCGA-BR-7716 
  "AMP PEAK 25(20Q13.2) MUTATED"   "AMP PEAK 25(20Q13.2) MUTATED" 
                    TCGA-BR-7717                     TCGA-BR-7722 
  "AMP PEAK 25(20Q13.2) MUTATED"   "AMP PEAK 25(20Q13.2) MUTATED" 
                    TCGA-BR-7723                     TCGA-BR-7851 
  "AMP PEAK 25(20Q13.2) MUTATED" "AMP PEAK 25(20Q13.2) WILD-TYPE" 
                    TCGA-BR-7901                     TCGA-BR-7957 
  "AMP PEAK 25(20Q13.2) MUTATED" "AMP PEAK 25(20Q13.2) WILD-TYPE" 
                    TCGA-BR-7958                     TCGA-BR-7959 
"AMP PEAK 25(20Q13.2) WILD-TYPE" "AMP PEAK 25(20Q13.2) WILD-TYPE" 
                    TCGA-BR-8059                     TCGA-BR-8060 
"AMP PEAK 25(20Q13.2) WILD-TYPE" "AMP PEAK 25(20Q13.2) WILD-TYPE" 
                    TCGA-BR-8077                     TCGA-BR-8078 
"AMP PEAK 25(20Q13.2) WILD-TYPE" "AMP PEAK 25(20Q13.2) WILD-TYPE" 
                    TCGA-BR-8080                     TCGA-BR-8081 
"AMP PEAK 25(20Q13.2) WILD-TYPE" "AMP PEAK 25(20Q13.2) WILD-TYPE" 
                    TCGA-BR-8284                     TCGA-BR-8285 
"AMP PEAK 25(20Q13.2) WILD-TYPE" "AMP PEAK 25(20Q13.2) WILD-TYPE" 
                    TCGA-BR-8286                     TCGA-BR-8289 
"AMP PEAK 25(20Q13.2) WILD-TYPE" "AMP PEAK 25(20Q13.2) WILD-TYPE" 
                    TCGA-BR-8291                     TCGA-BR-8295 
"AMP PEAK 25(20Q13.2) WILD-TYPE" "AMP PEAK 25(20Q13.2) WILD-TYPE" 
                    TCGA-BR-8296                     TCGA-BR-8297 
"AMP PEAK 25(20Q13.2) WILD-TYPE" "AMP PEAK 25(20Q13.2) WILD-TYPE" 
                    TCGA-CD-5798                     TCGA-CD-5799 
"AMP PEAK 25(20Q13.2) WILD-TYPE"   "AMP PEAK 25(20Q13.2) MUTATED" 
                    TCGA-CD-5800                     TCGA-CD-5801 
  "AMP PEAK 25(20Q13.2) MUTATED"   "AMP PEAK 25(20Q13.2) MUTATED" 
                    TCGA-CD-5802                     TCGA-CD-5803 
"AMP PEAK 25(20Q13.2) WILD-TYPE" "AMP PEAK 25(20Q13.2) WILD-TYPE" 
                    TCGA-CG-4300                     TCGA-CG-4301 
  "AMP PEAK 25(20Q13.2) MUTATED"   "AMP PEAK 25(20Q13.2) MUTATED" 
                    TCGA-CG-4304                     TCGA-CG-4305 
  "AMP PEAK 25(20Q13.2) MUTATED"   "AMP PEAK 25(20Q13.2) MUTATED" 
                    TCGA-CG-4306                     TCGA-CG-4436 
"AMP PEAK 25(20Q13.2) WILD-TYPE"   "AMP PEAK 25(20Q13.2) MUTATED" 
                    TCGA-CG-4437                     TCGA-CG-4438 
  "AMP PEAK 25(20Q13.2) MUTATED"   "AMP PEAK 25(20Q13.2) MUTATED" 
                    TCGA-CG-4440                     TCGA-CG-4441 
  "AMP PEAK 25(20Q13.2) MUTATED"   "AMP PEAK 25(20Q13.2) MUTATED" 
                    TCGA-CG-4443                     TCGA-CG-4444 
  "AMP PEAK 25(20Q13.2) MUTATED"   "AMP PEAK 25(20Q13.2) MUTATED" 
                    TCGA-CG-4449                     TCGA-CG-4455 
  "AMP PEAK 25(20Q13.2) MUTATED"   "AMP PEAK 25(20Q13.2) MUTATED" 
                    TCGA-CG-4460                     TCGA-CG-4462 
  "AMP PEAK 25(20Q13.2) MUTATED" "AMP PEAK 25(20Q13.2) WILD-TYPE" 
                    TCGA-CG-4465                     TCGA-CG-4466 
"AMP PEAK 25(20Q13.2) WILD-TYPE"   "AMP PEAK 25(20Q13.2) MUTATED" 
                    TCGA-CG-4469                     TCGA-CG-4472 
  "AMP PEAK 25(20Q13.2) MUTATED"   "AMP PEAK 25(20Q13.2) MUTATED" 
                    TCGA-CG-4474                     TCGA-CG-4477 
"AMP PEAK 25(20Q13.2) WILD-TYPE" "AMP PEAK 25(20Q13.2) WILD-TYPE" 
                    TCGA-CG-5716                     TCGA-CG-5717 
"AMP PEAK 25(20Q13.2) WILD-TYPE" "AMP PEAK 25(20Q13.2) WILD-TYPE" 
                    TCGA-CG-5718                     TCGA-CG-5719 
  "AMP PEAK 25(20Q13.2) MUTATED"   "AMP PEAK 25(20Q13.2) MUTATED" 
                    TCGA-CG-5720                     TCGA-CG-5721 
"AMP PEAK 25(20Q13.2) WILD-TYPE" "AMP PEAK 25(20Q13.2) WILD-TYPE" 
                    TCGA-CG-5722                     TCGA-CG-5723 
  "AMP PEAK 25(20Q13.2) MUTATED" "AMP PEAK 25(20Q13.2) WILD-TYPE" 
                    TCGA-CG-5724                     TCGA-CG-5725 
  "AMP PEAK 25(20Q13.2) MUTATED"   "AMP PEAK 25(20Q13.2) MUTATED" 
                    TCGA-CG-5726                     TCGA-CG-5727 
  "AMP PEAK 25(20Q13.2) MUTATED"   "AMP PEAK 25(20Q13.2) MUTATED" 
                    TCGA-CG-5728                     TCGA-CG-5730 
"AMP PEAK 25(20Q13.2) WILD-TYPE"   "AMP PEAK 25(20Q13.2) MUTATED" 
                    TCGA-CG-5732                     TCGA-CG-5733 
  "AMP PEAK 25(20Q13.2) MUTATED" "AMP PEAK 25(20Q13.2) WILD-TYPE" 
                    TCGA-CG-5734                     TCGA-D7-5577 
  "AMP PEAK 25(20Q13.2) MUTATED"   "AMP PEAK 25(20Q13.2) MUTATED" 
                    TCGA-D7-5578                     TCGA-D7-5579 
  "AMP PEAK 25(20Q13.2) MUTATED"   "AMP PEAK 25(20Q13.2) MUTATED" 
                    TCGA-D7-6518                     TCGA-D7-6519 
  "AMP PEAK 25(20Q13.2) MUTATED"   "AMP PEAK 25(20Q13.2) MUTATED" 
                    TCGA-D7-6520                     TCGA-D7-6521 
  "AMP PEAK 25(20Q13.2) MUTATED"   "AMP PEAK 25(20Q13.2) MUTATED" 
                    TCGA-D7-6522                     TCGA-D7-6524 
"AMP PEAK 25(20Q13.2) WILD-TYPE" "AMP PEAK 25(20Q13.2) WILD-TYPE" 
                    TCGA-D7-6525                     TCGA-D7-6526 
  "AMP PEAK 25(20Q13.2) MUTATED"   "AMP PEAK 25(20Q13.2) MUTATED" 
                    TCGA-D7-6527                     TCGA-D7-6528 
  "AMP PEAK 25(20Q13.2) MUTATED"   "AMP PEAK 25(20Q13.2) MUTATED" 
                    TCGA-D7-6815                     TCGA-D7-6817 
  "AMP PEAK 25(20Q13.2) MUTATED"   "AMP PEAK 25(20Q13.2) MUTATED" 
                    TCGA-D7-6818                     TCGA-D7-6820 
"AMP PEAK 25(20Q13.2) WILD-TYPE"   "AMP PEAK 25(20Q13.2) MUTATED" 
                    TCGA-D7-6822                     TCGA-EQ-5647 
  "AMP PEAK 25(20Q13.2) MUTATED"   "AMP PEAK 25(20Q13.2) MUTATED" 
                    TCGA-EQ-8122                     TCGA-F1-6177 
"AMP PEAK 25(20Q13.2) WILD-TYPE" "AMP PEAK 25(20Q13.2) WILD-TYPE" 
                    TCGA-F1-6874                     TCGA-F1-6875 
  "AMP PEAK 25(20Q13.2) MUTATED"   "AMP PEAK 25(20Q13.2) MUTATED" 
                    TCGA-FP-7735                     TCGA-FP-7829 
  "AMP PEAK 25(20Q13.2) MUTATED"   "AMP PEAK 25(20Q13.2) MUTATED" 
                    TCGA-FP-7916                     TCGA-FP-7998 
  "AMP PEAK 25(20Q13.2) MUTATED"   "AMP PEAK 25(20Q13.2) MUTATED" 
                    TCGA-HJ-7597                     TCGA-IN-7806 
  "AMP PEAK 25(20Q13.2) MUTATED"   "AMP PEAK 25(20Q13.2) MUTATED" 
                    TCGA-IN-7808                     TCGA-IP-7968 
  "AMP PEAK 25(20Q13.2) MUTATED"   "AMP PEAK 25(20Q13.2) MUTATED" 
[1] "hr=" "2.1"
D25V2, continuous
D25V3, binary
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  AMP PEAK 25(20Q13.2) MUTATED     31   68
  AMP PEAK 25(20Q13.2) WILD-TYPE   34   28
        clus
vv       AMP PEAK 25(20Q13.2) MUTATED AMP PEAK 25(20Q13.2) WILD-TYPE
  FEMALE                           31                             34
  MALE                             68                             28
D25V4, multiclass
D25V5, multiclass
    clus
vv   AMP PEAK 25(20Q13.2) MUTATED AMP PEAK 25(20Q13.2) WILD-TYPE
  T1                            3                              3
  T2                           37                             16
  T3                           41                             18
  T4                           12                             21
D25V6, multiclass
    clus
vv   AMP PEAK 25(20Q13.2) MUTATED AMP PEAK 25(20Q13.2) WILD-TYPE
  N0                           26                             24
  N1                           37                             20
  N2                           15                              9
  N3                           13                              6
D25V7, multiclass
    clus
vv   AMP PEAK 25(20Q13.2) MUTATED AMP PEAK 25(20Q13.2) WILD-TYPE
  M0                           81                             51
  M1                           10                              8
  MX                            8                              3
D25V8, multiclass
     clus
vv    AMP PEAK 25(20Q13.2) MUTATED AMP PEAK 25(20Q13.2) WILD-TYPE
  I                             14                             11
  II                            25                             18
  III                           33                             15
  IV                            17                             12
D25V9, binary
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  AMP PEAK 25(20Q13.2) MUTATED     96    3
  AMP PEAK 25(20Q13.2) WILD-TYPE   60    2
     clus
vv    AMP PEAK 25(20Q13.2) MUTATED AMP PEAK 25(20Q13.2) WILD-TYPE
  NO                             3                              2
  YES                           96                             60

Clustering(26) Variable = Amp Peak 26(Xq27.3) mutation analysis
D26V1, survival
                   TCGA-B7-5816                    TCGA-B7-5818 
"AMP PEAK 26(XQ27.3) WILD-TYPE"   "AMP PEAK 26(XQ27.3) MUTATED" 
                   TCGA-BR-6452                    TCGA-BR-6455 
"AMP PEAK 26(XQ27.3) WILD-TYPE" "AMP PEAK 26(XQ27.3) WILD-TYPE" 
                   TCGA-BR-6457                    TCGA-BR-6458 
"AMP PEAK 26(XQ27.3) WILD-TYPE"   "AMP PEAK 26(XQ27.3) MUTATED" 
                   TCGA-BR-6563                    TCGA-BR-6564 
"AMP PEAK 26(XQ27.3) WILD-TYPE" "AMP PEAK 26(XQ27.3) WILD-TYPE" 
                   TCGA-BR-6565                    TCGA-BR-6566 
"AMP PEAK 26(XQ27.3) WILD-TYPE" "AMP PEAK 26(XQ27.3) WILD-TYPE" 
                   TCGA-BR-6705                    TCGA-BR-6706 
"AMP PEAK 26(XQ27.3) WILD-TYPE" "AMP PEAK 26(XQ27.3) WILD-TYPE" 
                   TCGA-BR-6707                    TCGA-BR-6709 
"AMP PEAK 26(XQ27.3) WILD-TYPE" "AMP PEAK 26(XQ27.3) WILD-TYPE" 
                   TCGA-BR-6710                    TCGA-BR-6801 
"AMP PEAK 26(XQ27.3) WILD-TYPE"   "AMP PEAK 26(XQ27.3) MUTATED" 
                   TCGA-BR-6802                    TCGA-BR-6803 
"AMP PEAK 26(XQ27.3) WILD-TYPE" "AMP PEAK 26(XQ27.3) WILD-TYPE" 
                   TCGA-BR-6852                    TCGA-BR-7196 
"AMP PEAK 26(XQ27.3) WILD-TYPE" "AMP PEAK 26(XQ27.3) WILD-TYPE" 
                   TCGA-BR-7197                    TCGA-BR-7703 
"AMP PEAK 26(XQ27.3) WILD-TYPE" "AMP PEAK 26(XQ27.3) WILD-TYPE" 
                   TCGA-BR-7704                    TCGA-BR-7707 
  "AMP PEAK 26(XQ27.3) MUTATED" "AMP PEAK 26(XQ27.3) WILD-TYPE" 
                   TCGA-BR-7715                    TCGA-BR-7716 
"AMP PEAK 26(XQ27.3) WILD-TYPE" "AMP PEAK 26(XQ27.3) WILD-TYPE" 
                   TCGA-BR-7717                    TCGA-BR-7722 
  "AMP PEAK 26(XQ27.3) MUTATED" "AMP PEAK 26(XQ27.3) WILD-TYPE" 
                   TCGA-BR-7723                    TCGA-BR-7851 
"AMP PEAK 26(XQ27.3) WILD-TYPE" "AMP PEAK 26(XQ27.3) WILD-TYPE" 
                   TCGA-BR-7901                    TCGA-BR-7957 
"AMP PEAK 26(XQ27.3) WILD-TYPE" "AMP PEAK 26(XQ27.3) WILD-TYPE" 
                   TCGA-BR-7958                    TCGA-BR-7959 
"AMP PEAK 26(XQ27.3) WILD-TYPE" "AMP PEAK 26(XQ27.3) WILD-TYPE" 
                   TCGA-BR-8059                    TCGA-BR-8060 
"AMP PEAK 26(XQ27.3) WILD-TYPE" "AMP PEAK 26(XQ27.3) WILD-TYPE" 
                   TCGA-BR-8077                    TCGA-BR-8078 
"AMP PEAK 26(XQ27.3) WILD-TYPE" "AMP PEAK 26(XQ27.3) WILD-TYPE" 
                   TCGA-BR-8080                    TCGA-BR-8081 
"AMP PEAK 26(XQ27.3) WILD-TYPE" "AMP PEAK 26(XQ27.3) WILD-TYPE" 
                   TCGA-BR-8284                    TCGA-BR-8285 
"AMP PEAK 26(XQ27.3) WILD-TYPE" "AMP PEAK 26(XQ27.3) WILD-TYPE" 
                   TCGA-BR-8286                    TCGA-BR-8289 
"AMP PEAK 26(XQ27.3) WILD-TYPE" "AMP PEAK 26(XQ27.3) WILD-TYPE" 
                   TCGA-BR-8291                    TCGA-BR-8295 
"AMP PEAK 26(XQ27.3) WILD-TYPE" "AMP PEAK 26(XQ27.3) WILD-TYPE" 
                   TCGA-BR-8296                    TCGA-BR-8297 
"AMP PEAK 26(XQ27.3) WILD-TYPE" "AMP PEAK 26(XQ27.3) WILD-TYPE" 
                   TCGA-CD-5798                    TCGA-CD-5799 
"AMP PEAK 26(XQ27.3) WILD-TYPE" "AMP PEAK 26(XQ27.3) WILD-TYPE" 
                   TCGA-CD-5800                    TCGA-CD-5801 
"AMP PEAK 26(XQ27.3) WILD-TYPE" "AMP PEAK 26(XQ27.3) WILD-TYPE" 
                   TCGA-CD-5802                    TCGA-CD-5803 
"AMP PEAK 26(XQ27.3) WILD-TYPE" "AMP PEAK 26(XQ27.3) WILD-TYPE" 
                   TCGA-CG-4300                    TCGA-CG-4301 
  "AMP PEAK 26(XQ27.3) MUTATED" "AMP PEAK 26(XQ27.3) WILD-TYPE" 
                   TCGA-CG-4304                    TCGA-CG-4305 
"AMP PEAK 26(XQ27.3) WILD-TYPE" "AMP PEAK 26(XQ27.3) WILD-TYPE" 
                   TCGA-CG-4306                    TCGA-CG-4436 
"AMP PEAK 26(XQ27.3) WILD-TYPE" "AMP PEAK 26(XQ27.3) WILD-TYPE" 
                   TCGA-CG-4437                    TCGA-CG-4438 
  "AMP PEAK 26(XQ27.3) MUTATED"   "AMP PEAK 26(XQ27.3) MUTATED" 
                   TCGA-CG-4440                    TCGA-CG-4441 
"AMP PEAK 26(XQ27.3) WILD-TYPE" "AMP PEAK 26(XQ27.3) WILD-TYPE" 
                   TCGA-CG-4443                    TCGA-CG-4444 
"AMP PEAK 26(XQ27.3) WILD-TYPE" "AMP PEAK 26(XQ27.3) WILD-TYPE" 
                   TCGA-CG-4449                    TCGA-CG-4455 
"AMP PEAK 26(XQ27.3) WILD-TYPE" "AMP PEAK 26(XQ27.3) WILD-TYPE" 
                   TCGA-CG-4460                    TCGA-CG-4462 
  "AMP PEAK 26(XQ27.3) MUTATED" "AMP PEAK 26(XQ27.3) WILD-TYPE" 
                   TCGA-CG-4465                    TCGA-CG-4466 
"AMP PEAK 26(XQ27.3) WILD-TYPE" "AMP PEAK 26(XQ27.3) WILD-TYPE" 
                   TCGA-CG-4469                    TCGA-CG-4472 
  "AMP PEAK 26(XQ27.3) MUTATED"   "AMP PEAK 26(XQ27.3) MUTATED" 
                   TCGA-CG-4474                    TCGA-CG-4477 
"AMP PEAK 26(XQ27.3) WILD-TYPE" "AMP PEAK 26(XQ27.3) WILD-TYPE" 
                   TCGA-CG-5716                    TCGA-CG-5717 
"AMP PEAK 26(XQ27.3) WILD-TYPE" "AMP PEAK 26(XQ27.3) WILD-TYPE" 
                   TCGA-CG-5718                    TCGA-CG-5719 
"AMP PEAK 26(XQ27.3) WILD-TYPE" "AMP PEAK 26(XQ27.3) WILD-TYPE" 
                   TCGA-CG-5720                    TCGA-CG-5721 
  "AMP PEAK 26(XQ27.3) MUTATED" "AMP PEAK 26(XQ27.3) WILD-TYPE" 
                   TCGA-CG-5722                    TCGA-CG-5723 
"AMP PEAK 26(XQ27.3) WILD-TYPE" "AMP PEAK 26(XQ27.3) WILD-TYPE" 
                   TCGA-CG-5724                    TCGA-CG-5725 
"AMP PEAK 26(XQ27.3) WILD-TYPE" "AMP PEAK 26(XQ27.3) WILD-TYPE" 
                   TCGA-CG-5726                    TCGA-CG-5727 
"AMP PEAK 26(XQ27.3) WILD-TYPE"   "AMP PEAK 26(XQ27.3) MUTATED" 
                   TCGA-CG-5728                    TCGA-CG-5730 
"AMP PEAK 26(XQ27.3) WILD-TYPE" "AMP PEAK 26(XQ27.3) WILD-TYPE" 
                   TCGA-CG-5732                    TCGA-CG-5733 
"AMP PEAK 26(XQ27.3) WILD-TYPE" "AMP PEAK 26(XQ27.3) WILD-TYPE" 
                   TCGA-CG-5734                    TCGA-D7-5577 
  "AMP PEAK 26(XQ27.3) MUTATED" "AMP PEAK 26(XQ27.3) WILD-TYPE" 
                   TCGA-D7-5578                    TCGA-D7-5579 
"AMP PEAK 26(XQ27.3) WILD-TYPE"   "AMP PEAK 26(XQ27.3) MUTATED" 
                   TCGA-D7-6518                    TCGA-D7-6519 
"AMP PEAK 26(XQ27.3) WILD-TYPE" "AMP PEAK 26(XQ27.3) WILD-TYPE" 
                   TCGA-D7-6520                    TCGA-D7-6521 
"AMP PEAK 26(XQ27.3) WILD-TYPE"   "AMP PEAK 26(XQ27.3) MUTATED" 
                   TCGA-D7-6522                    TCGA-D7-6524 
"AMP PEAK 26(XQ27.3) WILD-TYPE" "AMP PEAK 26(XQ27.3) WILD-TYPE" 
                   TCGA-D7-6525                    TCGA-D7-6526 
"AMP PEAK 26(XQ27.3) WILD-TYPE"   "AMP PEAK 26(XQ27.3) MUTATED" 
                   TCGA-D7-6527                    TCGA-D7-6528 
"AMP PEAK 26(XQ27.3) WILD-TYPE"   "AMP PEAK 26(XQ27.3) MUTATED" 
                   TCGA-D7-6815                    TCGA-D7-6817 
  "AMP PEAK 26(XQ27.3) MUTATED" "AMP PEAK 26(XQ27.3) WILD-TYPE" 
                   TCGA-D7-6818                    TCGA-D7-6820 
"AMP PEAK 26(XQ27.3) WILD-TYPE" "AMP PEAK 26(XQ27.3) WILD-TYPE" 
                   TCGA-D7-6822                    TCGA-EQ-5647 
  "AMP PEAK 26(XQ27.3) MUTATED"   "AMP PEAK 26(XQ27.3) MUTATED" 
                   TCGA-EQ-8122                    TCGA-F1-6177 
"AMP PEAK 26(XQ27.3) WILD-TYPE" "AMP PEAK 26(XQ27.3) WILD-TYPE" 
                   TCGA-F1-6874                    TCGA-F1-6875 
"AMP PEAK 26(XQ27.3) WILD-TYPE"   "AMP PEAK 26(XQ27.3) MUTATED" 
                   TCGA-FP-7735                    TCGA-FP-7829 
  "AMP PEAK 26(XQ27.3) MUTATED" "AMP PEAK 26(XQ27.3) WILD-TYPE" 
                   TCGA-FP-7916                    TCGA-FP-7998 
"AMP PEAK 26(XQ27.3) WILD-TYPE" "AMP PEAK 26(XQ27.3) WILD-TYPE" 
                   TCGA-HJ-7597                    TCGA-IN-7806 
"AMP PEAK 26(XQ27.3) WILD-TYPE" "AMP PEAK 26(XQ27.3) WILD-TYPE" 
                   TCGA-IN-7808                    TCGA-IP-7968 
  "AMP PEAK 26(XQ27.3) MUTATED" "AMP PEAK 26(XQ27.3) WILD-TYPE" 
                   TCGA-B7-5816                    TCGA-B7-5818 
"AMP PEAK 26(XQ27.3) WILD-TYPE"   "AMP PEAK 26(XQ27.3) MUTATED" 
                   TCGA-BR-6452                    TCGA-BR-6455 
"AMP PEAK 26(XQ27.3) WILD-TYPE" "AMP PEAK 26(XQ27.3) WILD-TYPE" 
                   TCGA-BR-6457                    TCGA-BR-6458 
"AMP PEAK 26(XQ27.3) WILD-TYPE"   "AMP PEAK 26(XQ27.3) MUTATED" 
                   TCGA-BR-6563                    TCGA-BR-6564 
"AMP PEAK 26(XQ27.3) WILD-TYPE" "AMP PEAK 26(XQ27.3) WILD-TYPE" 
                   TCGA-BR-6565                    TCGA-BR-6566 
"AMP PEAK 26(XQ27.3) WILD-TYPE" "AMP PEAK 26(XQ27.3) WILD-TYPE" 
                   TCGA-BR-6705                    TCGA-BR-6706 
"AMP PEAK 26(XQ27.3) WILD-TYPE" "AMP PEAK 26(XQ27.3) WILD-TYPE" 
                   TCGA-BR-6707                    TCGA-BR-6709 
"AMP PEAK 26(XQ27.3) WILD-TYPE" "AMP PEAK 26(XQ27.3) WILD-TYPE" 
                   TCGA-BR-6710                    TCGA-BR-6801 
"AMP PEAK 26(XQ27.3) WILD-TYPE"   "AMP PEAK 26(XQ27.3) MUTATED" 
                   TCGA-BR-6802                    TCGA-BR-6803 
"AMP PEAK 26(XQ27.3) WILD-TYPE" "AMP PEAK 26(XQ27.3) WILD-TYPE" 
                   TCGA-BR-6852                    TCGA-BR-7196 
"AMP PEAK 26(XQ27.3) WILD-TYPE" "AMP PEAK 26(XQ27.3) WILD-TYPE" 
                   TCGA-BR-7197                    TCGA-BR-7703 
"AMP PEAK 26(XQ27.3) WILD-TYPE" "AMP PEAK 26(XQ27.3) WILD-TYPE" 
                   TCGA-BR-7704                    TCGA-BR-7707 
  "AMP PEAK 26(XQ27.3) MUTATED" "AMP PEAK 26(XQ27.3) WILD-TYPE" 
                   TCGA-BR-7715                    TCGA-BR-7716 
"AMP PEAK 26(XQ27.3) WILD-TYPE" "AMP PEAK 26(XQ27.3) WILD-TYPE" 
                   TCGA-BR-7717                    TCGA-BR-7722 
  "AMP PEAK 26(XQ27.3) MUTATED" "AMP PEAK 26(XQ27.3) WILD-TYPE" 
                   TCGA-BR-7723                    TCGA-BR-7851 
"AMP PEAK 26(XQ27.3) WILD-TYPE" "AMP PEAK 26(XQ27.3) WILD-TYPE" 
                   TCGA-BR-7901                    TCGA-BR-7957 
"AMP PEAK 26(XQ27.3) WILD-TYPE" "AMP PEAK 26(XQ27.3) WILD-TYPE" 
                   TCGA-BR-7958                    TCGA-BR-7959 
"AMP PEAK 26(XQ27.3) WILD-TYPE" "AMP PEAK 26(XQ27.3) WILD-TYPE" 
                   TCGA-BR-8059                    TCGA-BR-8060 
"AMP PEAK 26(XQ27.3) WILD-TYPE" "AMP PEAK 26(XQ27.3) WILD-TYPE" 
                   TCGA-BR-8077                    TCGA-BR-8078 
"AMP PEAK 26(XQ27.3) WILD-TYPE" "AMP PEAK 26(XQ27.3) WILD-TYPE" 
                   TCGA-BR-8080                    TCGA-BR-8081 
"AMP PEAK 26(XQ27.3) WILD-TYPE" "AMP PEAK 26(XQ27.3) WILD-TYPE" 
                   TCGA-BR-8284                    TCGA-BR-8285 
"AMP PEAK 26(XQ27.3) WILD-TYPE" "AMP PEAK 26(XQ27.3) WILD-TYPE" 
                   TCGA-BR-8286                    TCGA-BR-8289 
"AMP PEAK 26(XQ27.3) WILD-TYPE" "AMP PEAK 26(XQ27.3) WILD-TYPE" 
                   TCGA-BR-8291                    TCGA-BR-8295 
"AMP PEAK 26(XQ27.3) WILD-TYPE" "AMP PEAK 26(XQ27.3) WILD-TYPE" 
                   TCGA-BR-8296                    TCGA-BR-8297 
"AMP PEAK 26(XQ27.3) WILD-TYPE" "AMP PEAK 26(XQ27.3) WILD-TYPE" 
                   TCGA-CD-5798                    TCGA-CD-5799 
"AMP PEAK 26(XQ27.3) WILD-TYPE" "AMP PEAK 26(XQ27.3) WILD-TYPE" 
                   TCGA-CD-5800                    TCGA-CD-5801 
"AMP PEAK 26(XQ27.3) WILD-TYPE" "AMP PEAK 26(XQ27.3) WILD-TYPE" 
                   TCGA-CD-5802                    TCGA-CD-5803 
"AMP PEAK 26(XQ27.3) WILD-TYPE" "AMP PEAK 26(XQ27.3) WILD-TYPE" 
                   TCGA-CG-4300                    TCGA-CG-4301 
  "AMP PEAK 26(XQ27.3) MUTATED" "AMP PEAK 26(XQ27.3) WILD-TYPE" 
                   TCGA-CG-4304                    TCGA-CG-4305 
"AMP PEAK 26(XQ27.3) WILD-TYPE" "AMP PEAK 26(XQ27.3) WILD-TYPE" 
                   TCGA-CG-4306                    TCGA-CG-4436 
"AMP PEAK 26(XQ27.3) WILD-TYPE" "AMP PEAK 26(XQ27.3) WILD-TYPE" 
                   TCGA-CG-4437                    TCGA-CG-4438 
  "AMP PEAK 26(XQ27.3) MUTATED"   "AMP PEAK 26(XQ27.3) MUTATED" 
                   TCGA-CG-4440                    TCGA-CG-4441 
"AMP PEAK 26(XQ27.3) WILD-TYPE" "AMP PEAK 26(XQ27.3) WILD-TYPE" 
                   TCGA-CG-4443                    TCGA-CG-4444 
"AMP PEAK 26(XQ27.3) WILD-TYPE" "AMP PEAK 26(XQ27.3) WILD-TYPE" 
                   TCGA-CG-4449                    TCGA-CG-4455 
"AMP PEAK 26(XQ27.3) WILD-TYPE" "AMP PEAK 26(XQ27.3) WILD-TYPE" 
                   TCGA-CG-4460                    TCGA-CG-4462 
  "AMP PEAK 26(XQ27.3) MUTATED" "AMP PEAK 26(XQ27.3) WILD-TYPE" 
                   TCGA-CG-4465                    TCGA-CG-4466 
"AMP PEAK 26(XQ27.3) WILD-TYPE" "AMP PEAK 26(XQ27.3) WILD-TYPE" 
                   TCGA-CG-4469                    TCGA-CG-4472 
  "AMP PEAK 26(XQ27.3) MUTATED"   "AMP PEAK 26(XQ27.3) MUTATED" 
                   TCGA-CG-4474                    TCGA-CG-4477 
"AMP PEAK 26(XQ27.3) WILD-TYPE" "AMP PEAK 26(XQ27.3) WILD-TYPE" 
                   TCGA-CG-5716                    TCGA-CG-5717 
"AMP PEAK 26(XQ27.3) WILD-TYPE" "AMP PEAK 26(XQ27.3) WILD-TYPE" 
                   TCGA-CG-5718                    TCGA-CG-5719 
"AMP PEAK 26(XQ27.3) WILD-TYPE" "AMP PEAK 26(XQ27.3) WILD-TYPE" 
                   TCGA-CG-5720                    TCGA-CG-5721 
  "AMP PEAK 26(XQ27.3) MUTATED" "AMP PEAK 26(XQ27.3) WILD-TYPE" 
                   TCGA-CG-5722                    TCGA-CG-5723 
"AMP PEAK 26(XQ27.3) WILD-TYPE" "AMP PEAK 26(XQ27.3) WILD-TYPE" 
                   TCGA-CG-5724                    TCGA-CG-5725 
"AMP PEAK 26(XQ27.3) WILD-TYPE" "AMP PEAK 26(XQ27.3) WILD-TYPE" 
                   TCGA-CG-5726                    TCGA-CG-5727 
"AMP PEAK 26(XQ27.3) WILD-TYPE"   "AMP PEAK 26(XQ27.3) MUTATED" 
                   TCGA-CG-5728                    TCGA-CG-5730 
"AMP PEAK 26(XQ27.3) WILD-TYPE" "AMP PEAK 26(XQ27.3) WILD-TYPE" 
                   TCGA-CG-5732                    TCGA-CG-5733 
"AMP PEAK 26(XQ27.3) WILD-TYPE" "AMP PEAK 26(XQ27.3) WILD-TYPE" 
                   TCGA-CG-5734                    TCGA-D7-5577 
  "AMP PEAK 26(XQ27.3) MUTATED" "AMP PEAK 26(XQ27.3) WILD-TYPE" 
                   TCGA-D7-5578                    TCGA-D7-5579 
"AMP PEAK 26(XQ27.3) WILD-TYPE"   "AMP PEAK 26(XQ27.3) MUTATED" 
                   TCGA-D7-6518                    TCGA-D7-6519 
"AMP PEAK 26(XQ27.3) WILD-TYPE" "AMP PEAK 26(XQ27.3) WILD-TYPE" 
                   TCGA-D7-6520                    TCGA-D7-6521 
"AMP PEAK 26(XQ27.3) WILD-TYPE"   "AMP PEAK 26(XQ27.3) MUTATED" 
                   TCGA-D7-6522                    TCGA-D7-6524 
"AMP PEAK 26(XQ27.3) WILD-TYPE" "AMP PEAK 26(XQ27.3) WILD-TYPE" 
                   TCGA-D7-6525                    TCGA-D7-6526 
"AMP PEAK 26(XQ27.3) WILD-TYPE"   "AMP PEAK 26(XQ27.3) MUTATED" 
                   TCGA-D7-6527                    TCGA-D7-6528 
"AMP PEAK 26(XQ27.3) WILD-TYPE"   "AMP PEAK 26(XQ27.3) MUTATED" 
                   TCGA-D7-6815                    TCGA-D7-6817 
  "AMP PEAK 26(XQ27.3) MUTATED" "AMP PEAK 26(XQ27.3) WILD-TYPE" 
                   TCGA-D7-6818                    TCGA-D7-6820 
"AMP PEAK 26(XQ27.3) WILD-TYPE" "AMP PEAK 26(XQ27.3) WILD-TYPE" 
                   TCGA-D7-6822                    TCGA-EQ-5647 
  "AMP PEAK 26(XQ27.3) MUTATED"   "AMP PEAK 26(XQ27.3) MUTATED" 
                   TCGA-EQ-8122                    TCGA-F1-6177 
"AMP PEAK 26(XQ27.3) WILD-TYPE" "AMP PEAK 26(XQ27.3) WILD-TYPE" 
                   TCGA-F1-6874                    TCGA-F1-6875 
"AMP PEAK 26(XQ27.3) WILD-TYPE"   "AMP PEAK 26(XQ27.3) MUTATED" 
                   TCGA-FP-7735                    TCGA-FP-7829 
  "AMP PEAK 26(XQ27.3) MUTATED" "AMP PEAK 26(XQ27.3) WILD-TYPE" 
                   TCGA-FP-7916                    TCGA-FP-7998 
"AMP PEAK 26(XQ27.3) WILD-TYPE" "AMP PEAK 26(XQ27.3) WILD-TYPE" 
                   TCGA-HJ-7597                    TCGA-IN-7806 
"AMP PEAK 26(XQ27.3) WILD-TYPE" "AMP PEAK 26(XQ27.3) WILD-TYPE" 
                   TCGA-IN-7808                    TCGA-IP-7968 
  "AMP PEAK 26(XQ27.3) MUTATED" "AMP PEAK 26(XQ27.3) WILD-TYPE" 
                   TCGA-B7-5816                    TCGA-B7-5818 
"AMP PEAK 26(XQ27.3) WILD-TYPE"   "AMP PEAK 26(XQ27.3) MUTATED" 
                   TCGA-BR-6452                    TCGA-BR-6455 
"AMP PEAK 26(XQ27.3) WILD-TYPE" "AMP PEAK 26(XQ27.3) WILD-TYPE" 
                   TCGA-BR-6457                    TCGA-BR-6458 
"AMP PEAK 26(XQ27.3) WILD-TYPE"   "AMP PEAK 26(XQ27.3) MUTATED" 
                   TCGA-BR-6563                    TCGA-BR-6564 
"AMP PEAK 26(XQ27.3) WILD-TYPE" "AMP PEAK 26(XQ27.3) WILD-TYPE" 
                   TCGA-BR-6565                    TCGA-BR-6566 
"AMP PEAK 26(XQ27.3) WILD-TYPE" "AMP PEAK 26(XQ27.3) WILD-TYPE" 
                   TCGA-BR-6705                    TCGA-BR-6706 
"AMP PEAK 26(XQ27.3) WILD-TYPE" "AMP PEAK 26(XQ27.3) WILD-TYPE" 
                   TCGA-BR-6707                    TCGA-BR-6709 
"AMP PEAK 26(XQ27.3) WILD-TYPE" "AMP PEAK 26(XQ27.3) WILD-TYPE" 
                   TCGA-BR-6710                    TCGA-BR-6801 
"AMP PEAK 26(XQ27.3) WILD-TYPE"   "AMP PEAK 26(XQ27.3) MUTATED" 
                   TCGA-BR-6802                    TCGA-BR-6803 
"AMP PEAK 26(XQ27.3) WILD-TYPE" "AMP PEAK 26(XQ27.3) WILD-TYPE" 
                   TCGA-BR-6852                    TCGA-BR-7196 
"AMP PEAK 26(XQ27.3) WILD-TYPE" "AMP PEAK 26(XQ27.3) WILD-TYPE" 
                   TCGA-BR-7197                    TCGA-BR-7703 
"AMP PEAK 26(XQ27.3) WILD-TYPE" "AMP PEAK 26(XQ27.3) WILD-TYPE" 
                   TCGA-BR-7704                    TCGA-BR-7707 
  "AMP PEAK 26(XQ27.3) MUTATED" "AMP PEAK 26(XQ27.3) WILD-TYPE" 
                   TCGA-BR-7715                    TCGA-BR-7716 
"AMP PEAK 26(XQ27.3) WILD-TYPE" "AMP PEAK 26(XQ27.3) WILD-TYPE" 
                   TCGA-BR-7717                    TCGA-BR-7722 
  "AMP PEAK 26(XQ27.3) MUTATED" "AMP PEAK 26(XQ27.3) WILD-TYPE" 
                   TCGA-BR-7723                    TCGA-BR-7851 
"AMP PEAK 26(XQ27.3) WILD-TYPE" "AMP PEAK 26(XQ27.3) WILD-TYPE" 
                   TCGA-BR-7901                    TCGA-BR-7957 
"AMP PEAK 26(XQ27.3) WILD-TYPE" "AMP PEAK 26(XQ27.3) WILD-TYPE" 
                   TCGA-BR-7958                    TCGA-BR-7959 
"AMP PEAK 26(XQ27.3) WILD-TYPE" "AMP PEAK 26(XQ27.3) WILD-TYPE" 
                   TCGA-BR-8059                    TCGA-BR-8060 
"AMP PEAK 26(XQ27.3) WILD-TYPE" "AMP PEAK 26(XQ27.3) WILD-TYPE" 
                   TCGA-BR-8077                    TCGA-BR-8078 
"AMP PEAK 26(XQ27.3) WILD-TYPE" "AMP PEAK 26(XQ27.3) WILD-TYPE" 
                   TCGA-BR-8080                    TCGA-BR-8081 
"AMP PEAK 26(XQ27.3) WILD-TYPE" "AMP PEAK 26(XQ27.3) WILD-TYPE" 
                   TCGA-BR-8284                    TCGA-BR-8285 
"AMP PEAK 26(XQ27.3) WILD-TYPE" "AMP PEAK 26(XQ27.3) WILD-TYPE" 
                   TCGA-BR-8286                    TCGA-BR-8289 
"AMP PEAK 26(XQ27.3) WILD-TYPE" "AMP PEAK 26(XQ27.3) WILD-TYPE" 
                   TCGA-BR-8291                    TCGA-BR-8295 
"AMP PEAK 26(XQ27.3) WILD-TYPE" "AMP PEAK 26(XQ27.3) WILD-TYPE" 
                   TCGA-BR-8296                    TCGA-BR-8297 
"AMP PEAK 26(XQ27.3) WILD-TYPE" "AMP PEAK 26(XQ27.3) WILD-TYPE" 
                   TCGA-CD-5798                    TCGA-CD-5799 
"AMP PEAK 26(XQ27.3) WILD-TYPE" "AMP PEAK 26(XQ27.3) WILD-TYPE" 
                   TCGA-CD-5800                    TCGA-CD-5801 
"AMP PEAK 26(XQ27.3) WILD-TYPE" "AMP PEAK 26(XQ27.3) WILD-TYPE" 
                   TCGA-CD-5802                    TCGA-CD-5803 
"AMP PEAK 26(XQ27.3) WILD-TYPE" "AMP PEAK 26(XQ27.3) WILD-TYPE" 
                   TCGA-CG-4300                    TCGA-CG-4301 
  "AMP PEAK 26(XQ27.3) MUTATED" "AMP PEAK 26(XQ27.3) WILD-TYPE" 
                   TCGA-CG-4304                    TCGA-CG-4305 
"AMP PEAK 26(XQ27.3) WILD-TYPE" "AMP PEAK 26(XQ27.3) WILD-TYPE" 
                   TCGA-CG-4306                    TCGA-CG-4436 
"AMP PEAK 26(XQ27.3) WILD-TYPE" "AMP PEAK 26(XQ27.3) WILD-TYPE" 
                   TCGA-CG-4437                    TCGA-CG-4438 
  "AMP PEAK 26(XQ27.3) MUTATED"   "AMP PEAK 26(XQ27.3) MUTATED" 
                   TCGA-CG-4440                    TCGA-CG-4441 
"AMP PEAK 26(XQ27.3) WILD-TYPE" "AMP PEAK 26(XQ27.3) WILD-TYPE" 
                   TCGA-CG-4443                    TCGA-CG-4444 
"AMP PEAK 26(XQ27.3) WILD-TYPE" "AMP PEAK 26(XQ27.3) WILD-TYPE" 
                   TCGA-CG-4449                    TCGA-CG-4455 
"AMP PEAK 26(XQ27.3) WILD-TYPE" "AMP PEAK 26(XQ27.3) WILD-TYPE" 
                   TCGA-CG-4460                    TCGA-CG-4462 
  "AMP PEAK 26(XQ27.3) MUTATED" "AMP PEAK 26(XQ27.3) WILD-TYPE" 
                   TCGA-CG-4465                    TCGA-CG-4466 
"AMP PEAK 26(XQ27.3) WILD-TYPE" "AMP PEAK 26(XQ27.3) WILD-TYPE" 
                   TCGA-CG-4469                    TCGA-CG-4472 
  "AMP PEAK 26(XQ27.3) MUTATED"   "AMP PEAK 26(XQ27.3) MUTATED" 
                   TCGA-CG-4474                    TCGA-CG-4477 
"AMP PEAK 26(XQ27.3) WILD-TYPE" "AMP PEAK 26(XQ27.3) WILD-TYPE" 
                   TCGA-CG-5716                    TCGA-CG-5717 
"AMP PEAK 26(XQ27.3) WILD-TYPE" "AMP PEAK 26(XQ27.3) WILD-TYPE" 
                   TCGA-CG-5718                    TCGA-CG-5719 
"AMP PEAK 26(XQ27.3) WILD-TYPE" "AMP PEAK 26(XQ27.3) WILD-TYPE" 
                   TCGA-CG-5720                    TCGA-CG-5721 
  "AMP PEAK 26(XQ27.3) MUTATED" "AMP PEAK 26(XQ27.3) WILD-TYPE" 
                   TCGA-CG-5722                    TCGA-CG-5723 
"AMP PEAK 26(XQ27.3) WILD-TYPE" "AMP PEAK 26(XQ27.3) WILD-TYPE" 
                   TCGA-CG-5724                    TCGA-CG-5725 
"AMP PEAK 26(XQ27.3) WILD-TYPE" "AMP PEAK 26(XQ27.3) WILD-TYPE" 
                   TCGA-CG-5726                    TCGA-CG-5727 
"AMP PEAK 26(XQ27.3) WILD-TYPE"   "AMP PEAK 26(XQ27.3) MUTATED" 
                   TCGA-CG-5728                    TCGA-CG-5730 
"AMP PEAK 26(XQ27.3) WILD-TYPE" "AMP PEAK 26(XQ27.3) WILD-TYPE" 
                   TCGA-CG-5732                    TCGA-CG-5733 
"AMP PEAK 26(XQ27.3) WILD-TYPE" "AMP PEAK 26(XQ27.3) WILD-TYPE" 
                   TCGA-CG-5734                    TCGA-D7-5577 
  "AMP PEAK 26(XQ27.3) MUTATED" "AMP PEAK 26(XQ27.3) WILD-TYPE" 
                   TCGA-D7-5578                    TCGA-D7-5579 
"AMP PEAK 26(XQ27.3) WILD-TYPE"   "AMP PEAK 26(XQ27.3) MUTATED" 
                   TCGA-D7-6518                    TCGA-D7-6519 
"AMP PEAK 26(XQ27.3) WILD-TYPE" "AMP PEAK 26(XQ27.3) WILD-TYPE" 
                   TCGA-D7-6520                    TCGA-D7-6521 
"AMP PEAK 26(XQ27.3) WILD-TYPE"   "AMP PEAK 26(XQ27.3) MUTATED" 
                   TCGA-D7-6522                    TCGA-D7-6524 
"AMP PEAK 26(XQ27.3) WILD-TYPE" "AMP PEAK 26(XQ27.3) WILD-TYPE" 
                   TCGA-D7-6525                    TCGA-D7-6526 
"AMP PEAK 26(XQ27.3) WILD-TYPE"   "AMP PEAK 26(XQ27.3) MUTATED" 
                   TCGA-D7-6527                    TCGA-D7-6528 
"AMP PEAK 26(XQ27.3) WILD-TYPE"   "AMP PEAK 26(XQ27.3) MUTATED" 
                   TCGA-D7-6815                    TCGA-D7-6817 
  "AMP PEAK 26(XQ27.3) MUTATED" "AMP PEAK 26(XQ27.3) WILD-TYPE" 
                   TCGA-D7-6818                    TCGA-D7-6820 
"AMP PEAK 26(XQ27.3) WILD-TYPE" "AMP PEAK 26(XQ27.3) WILD-TYPE" 
                   TCGA-D7-6822                    TCGA-EQ-5647 
  "AMP PEAK 26(XQ27.3) MUTATED"   "AMP PEAK 26(XQ27.3) MUTATED" 
                   TCGA-EQ-8122                    TCGA-F1-6177 
"AMP PEAK 26(XQ27.3) WILD-TYPE" "AMP PEAK 26(XQ27.3) WILD-TYPE" 
                   TCGA-F1-6874                    TCGA-F1-6875 
"AMP PEAK 26(XQ27.3) WILD-TYPE"   "AMP PEAK 26(XQ27.3) MUTATED" 
                   TCGA-FP-7735                    TCGA-FP-7829 
  "AMP PEAK 26(XQ27.3) MUTATED" "AMP PEAK 26(XQ27.3) WILD-TYPE" 
                   TCGA-FP-7916                    TCGA-FP-7998 
"AMP PEAK 26(XQ27.3) WILD-TYPE" "AMP PEAK 26(XQ27.3) WILD-TYPE" 
                   TCGA-HJ-7597                    TCGA-IN-7806 
"AMP PEAK 26(XQ27.3) WILD-TYPE" "AMP PEAK 26(XQ27.3) WILD-TYPE" 
                   TCGA-IN-7808                    TCGA-IP-7968 
  "AMP PEAK 26(XQ27.3) MUTATED" "AMP PEAK 26(XQ27.3) WILD-TYPE" 
[1] "hr=" "1.4"
D26V2, continuous
D26V3, binary
[1] "tbl2"
                               cls
clus                            [,1] [,2]
  AMP PEAK 26(XQ27.3) MUTATED     12   20
  AMP PEAK 26(XQ27.3) WILD-TYPE   53   76
        clus
vv       AMP PEAK 26(XQ27.3) MUTATED AMP PEAK 26(XQ27.3) WILD-TYPE
  FEMALE                          12                            53
  MALE                            20                            76
D26V4, multiclass
D26V5, multiclass
    clus
vv   AMP PEAK 26(XQ27.3) MUTATED AMP PEAK 26(XQ27.3) WILD-TYPE
  T1                           1                             5
  T2                          11                            42
  T3                          11                            48
  T4                           7                            26
D26V6, multiclass
    clus
vv   AMP PEAK 26(XQ27.3) MUTATED AMP PEAK 26(XQ27.3) WILD-TYPE
  N0                          10                            40
  N1                          10                            47
  N2                           7                            17
  N3                           4                            15
D26V7, multiclass
    clus
vv   AMP PEAK 26(XQ27.3) MUTATED AMP PEAK 26(XQ27.3) WILD-TYPE
  M0                          28                           104
  M1                           3                            15
  MX                           1                            10
D26V8, multiclass
     clus
vv    AMP PEAK 26(XQ27.3) MUTATED AMP PEAK 26(XQ27.3) WILD-TYPE
  I                             7                            18
  II                            5                            38
  III                           9                            39
  IV                            8                            21
D26V9, binary
[1] "tbl2"
                               cls
clus                            [,1] [,2]
  AMP PEAK 26(XQ27.3) MUTATED     31    1
  AMP PEAK 26(XQ27.3) WILD-TYPE  125    4
     clus
vv    AMP PEAK 26(XQ27.3) MUTATED AMP PEAK 26(XQ27.3) WILD-TYPE
  NO                            1                             4
  YES                          31                           125

Clustering(27) Variable = Del Peak  1(1p36.11) mutation analysis
D27V1, survival
                    TCGA-B7-5816                     TCGA-B7-5818 
  "DEL PEAK  1(1P36.11) MUTATED" "DEL PEAK  1(1P36.11) WILD-TYPE" 
                    TCGA-BR-6452                     TCGA-BR-6455 
"DEL PEAK  1(1P36.11) WILD-TYPE" "DEL PEAK  1(1P36.11) WILD-TYPE" 
                    TCGA-BR-6457                     TCGA-BR-6458 
"DEL PEAK  1(1P36.11) WILD-TYPE"   "DEL PEAK  1(1P36.11) MUTATED" 
                    TCGA-BR-6563                     TCGA-BR-6564 
"DEL PEAK  1(1P36.11) WILD-TYPE" "DEL PEAK  1(1P36.11) WILD-TYPE" 
                    TCGA-BR-6565                     TCGA-BR-6566 
  "DEL PEAK  1(1P36.11) MUTATED" "DEL PEAK  1(1P36.11) WILD-TYPE" 
                    TCGA-BR-6705                     TCGA-BR-6706 
"DEL PEAK  1(1P36.11) WILD-TYPE" "DEL PEAK  1(1P36.11) WILD-TYPE" 
                    TCGA-BR-6707                     TCGA-BR-6709 
"DEL PEAK  1(1P36.11) WILD-TYPE" "DEL PEAK  1(1P36.11) WILD-TYPE" 
                    TCGA-BR-6710                     TCGA-BR-6801 
"DEL PEAK  1(1P36.11) WILD-TYPE" "DEL PEAK  1(1P36.11) WILD-TYPE" 
                    TCGA-BR-6802                     TCGA-BR-6803 
"DEL PEAK  1(1P36.11) WILD-TYPE" "DEL PEAK  1(1P36.11) WILD-TYPE" 
                    TCGA-BR-6852                     TCGA-BR-7196 
"DEL PEAK  1(1P36.11) WILD-TYPE" "DEL PEAK  1(1P36.11) WILD-TYPE" 
                    TCGA-BR-7197                     TCGA-BR-7703 
"DEL PEAK  1(1P36.11) WILD-TYPE" "DEL PEAK  1(1P36.11) WILD-TYPE" 
                    TCGA-BR-7704                     TCGA-BR-7707 
"DEL PEAK  1(1P36.11) WILD-TYPE" "DEL PEAK  1(1P36.11) WILD-TYPE" 
                    TCGA-BR-7715                     TCGA-BR-7716 
"DEL PEAK  1(1P36.11) WILD-TYPE" "DEL PEAK  1(1P36.11) WILD-TYPE" 
                    TCGA-BR-7717                     TCGA-BR-7722 
"DEL PEAK  1(1P36.11) WILD-TYPE" "DEL PEAK  1(1P36.11) WILD-TYPE" 
                    TCGA-BR-7723                     TCGA-BR-7851 
"DEL PEAK  1(1P36.11) WILD-TYPE" "DEL PEAK  1(1P36.11) WILD-TYPE" 
                    TCGA-BR-7901                     TCGA-BR-7957 
"DEL PEAK  1(1P36.11) WILD-TYPE" "DEL PEAK  1(1P36.11) WILD-TYPE" 
                    TCGA-BR-7958                     TCGA-BR-7959 
"DEL PEAK  1(1P36.11) WILD-TYPE" "DEL PEAK  1(1P36.11) WILD-TYPE" 
                    TCGA-BR-8059                     TCGA-BR-8060 
"DEL PEAK  1(1P36.11) WILD-TYPE" "DEL PEAK  1(1P36.11) WILD-TYPE" 
                    TCGA-BR-8077                     TCGA-BR-8078 
"DEL PEAK  1(1P36.11) WILD-TYPE" "DEL PEAK  1(1P36.11) WILD-TYPE" 
                    TCGA-BR-8080                     TCGA-BR-8081 
"DEL PEAK  1(1P36.11) WILD-TYPE" "DEL PEAK  1(1P36.11) WILD-TYPE" 
                    TCGA-BR-8284                     TCGA-BR-8285 
"DEL PEAK  1(1P36.11) WILD-TYPE" "DEL PEAK  1(1P36.11) WILD-TYPE" 
                    TCGA-BR-8286                     TCGA-BR-8289 
"DEL PEAK  1(1P36.11) WILD-TYPE" "DEL PEAK  1(1P36.11) WILD-TYPE" 
                    TCGA-BR-8291                     TCGA-BR-8295 
"DEL PEAK  1(1P36.11) WILD-TYPE" "DEL PEAK  1(1P36.11) WILD-TYPE" 
                    TCGA-BR-8296                     TCGA-BR-8297 
"DEL PEAK  1(1P36.11) WILD-TYPE" "DEL PEAK  1(1P36.11) WILD-TYPE" 
                    TCGA-CD-5798                     TCGA-CD-5799 
"DEL PEAK  1(1P36.11) WILD-TYPE"   "DEL PEAK  1(1P36.11) MUTATED" 
                    TCGA-CD-5800                     TCGA-CD-5801 
"DEL PEAK  1(1P36.11) WILD-TYPE" "DEL PEAK  1(1P36.11) WILD-TYPE" 
                    TCGA-CD-5802                     TCGA-CD-5803 
"DEL PEAK  1(1P36.11) WILD-TYPE" "DEL PEAK  1(1P36.11) WILD-TYPE" 
                    TCGA-CG-4300                     TCGA-CG-4301 
  "DEL PEAK  1(1P36.11) MUTATED"   "DEL PEAK  1(1P36.11) MUTATED" 
                    TCGA-CG-4304                     TCGA-CG-4305 
"DEL PEAK  1(1P36.11) WILD-TYPE" "DEL PEAK  1(1P36.11) WILD-TYPE" 
                    TCGA-CG-4306                     TCGA-CG-4436 
"DEL PEAK  1(1P36.11) WILD-TYPE"   "DEL PEAK  1(1P36.11) MUTATED" 
                    TCGA-CG-4437                     TCGA-CG-4438 
  "DEL PEAK  1(1P36.11) MUTATED"   "DEL PEAK  1(1P36.11) MUTATED" 
                    TCGA-CG-4440                     TCGA-CG-4441 
"DEL PEAK  1(1P36.11) WILD-TYPE"   "DEL PEAK  1(1P36.11) MUTATED" 
                    TCGA-CG-4443                     TCGA-CG-4444 
  "DEL PEAK  1(1P36.11) MUTATED"   "DEL PEAK  1(1P36.11) MUTATED" 
                    TCGA-CG-4449                     TCGA-CG-4455 
  "DEL PEAK  1(1P36.11) MUTATED" "DEL PEAK  1(1P36.11) WILD-TYPE" 
                    TCGA-CG-4460                     TCGA-CG-4462 
"DEL PEAK  1(1P36.11) WILD-TYPE" "DEL PEAK  1(1P36.11) WILD-TYPE" 
                    TCGA-CG-4465                     TCGA-CG-4466 
"DEL PEAK  1(1P36.11) WILD-TYPE" "DEL PEAK  1(1P36.11) WILD-TYPE" 
                    TCGA-CG-4469                     TCGA-CG-4472 
  "DEL PEAK  1(1P36.11) MUTATED" "DEL PEAK  1(1P36.11) WILD-TYPE" 
                    TCGA-CG-4474                     TCGA-CG-4477 
"DEL PEAK  1(1P36.11) WILD-TYPE"   "DEL PEAK  1(1P36.11) MUTATED" 
                    TCGA-CG-5716                     TCGA-CG-5717 
"DEL PEAK  1(1P36.11) WILD-TYPE" "DEL PEAK  1(1P36.11) WILD-TYPE" 
                    TCGA-CG-5718                     TCGA-CG-5719 
"DEL PEAK  1(1P36.11) WILD-TYPE"   "DEL PEAK  1(1P36.11) MUTATED" 
                    TCGA-CG-5720                     TCGA-CG-5721 
"DEL PEAK  1(1P36.11) WILD-TYPE" "DEL PEAK  1(1P36.11) WILD-TYPE" 
                    TCGA-CG-5722                     TCGA-CG-5723 
"DEL PEAK  1(1P36.11) WILD-TYPE" "DEL PEAK  1(1P36.11) WILD-TYPE" 
                    TCGA-CG-5724                     TCGA-CG-5725 
  "DEL PEAK  1(1P36.11) MUTATED"   "DEL PEAK  1(1P36.11) MUTATED" 
                    TCGA-CG-5726                     TCGA-CG-5727 
"DEL PEAK  1(1P36.11) WILD-TYPE" "DEL PEAK  1(1P36.11) WILD-TYPE" 
                    TCGA-CG-5728                     TCGA-CG-5730 
"DEL PEAK  1(1P36.11) WILD-TYPE"   "DEL PEAK  1(1P36.11) MUTATED" 
                    TCGA-CG-5732                     TCGA-CG-5733 
"DEL PEAK  1(1P36.11) WILD-TYPE" "DEL PEAK  1(1P36.11) WILD-TYPE" 
                    TCGA-CG-5734                     TCGA-D7-5577 
"DEL PEAK  1(1P36.11) WILD-TYPE" "DEL PEAK  1(1P36.11) WILD-TYPE" 
                    TCGA-D7-5578                     TCGA-D7-5579 
"DEL PEAK  1(1P36.11) WILD-TYPE"   "DEL PEAK  1(1P36.11) MUTATED" 
                    TCGA-D7-6518                     TCGA-D7-6519 
"DEL PEAK  1(1P36.11) WILD-TYPE"   "DEL PEAK  1(1P36.11) MUTATED" 
                    TCGA-D7-6520                     TCGA-D7-6521 
"DEL PEAK  1(1P36.11) WILD-TYPE" "DEL PEAK  1(1P36.11) WILD-TYPE" 
                    TCGA-D7-6522                     TCGA-D7-6524 
"DEL PEAK  1(1P36.11) WILD-TYPE" "DEL PEAK  1(1P36.11) WILD-TYPE" 
                    TCGA-D7-6525                     TCGA-D7-6526 
"DEL PEAK  1(1P36.11) WILD-TYPE"   "DEL PEAK  1(1P36.11) MUTATED" 
                    TCGA-D7-6527                     TCGA-D7-6528 
  "DEL PEAK  1(1P36.11) MUTATED"   "DEL PEAK  1(1P36.11) MUTATED" 
                    TCGA-D7-6815                     TCGA-D7-6817 
"DEL PEAK  1(1P36.11) WILD-TYPE"   "DEL PEAK  1(1P36.11) MUTATED" 
                    TCGA-D7-6818                     TCGA-D7-6820 
"DEL PEAK  1(1P36.11) WILD-TYPE" "DEL PEAK  1(1P36.11) WILD-TYPE" 
                    TCGA-D7-6822                     TCGA-EQ-5647 
  "DEL PEAK  1(1P36.11) MUTATED"   "DEL PEAK  1(1P36.11) MUTATED" 
                    TCGA-EQ-8122                     TCGA-F1-6177 
  "DEL PEAK  1(1P36.11) MUTATED" "DEL PEAK  1(1P36.11) WILD-TYPE" 
                    TCGA-F1-6874                     TCGA-F1-6875 
"DEL PEAK  1(1P36.11) WILD-TYPE" "DEL PEAK  1(1P36.11) WILD-TYPE" 
                    TCGA-FP-7735                     TCGA-FP-7829 
"DEL PEAK  1(1P36.11) WILD-TYPE" "DEL PEAK  1(1P36.11) WILD-TYPE" 
                    TCGA-FP-7916                     TCGA-FP-7998 
"DEL PEAK  1(1P36.11) WILD-TYPE" "DEL PEAK  1(1P36.11) WILD-TYPE" 
                    TCGA-HJ-7597                     TCGA-IN-7806 
"DEL PEAK  1(1P36.11) WILD-TYPE" "DEL PEAK  1(1P36.11) WILD-TYPE" 
                    TCGA-IN-7808                     TCGA-IP-7968 
"DEL PEAK  1(1P36.11) WILD-TYPE" "DEL PEAK  1(1P36.11) WILD-TYPE" 
                    TCGA-B7-5816                     TCGA-B7-5818 
  "DEL PEAK  1(1P36.11) MUTATED" "DEL PEAK  1(1P36.11) WILD-TYPE" 
                    TCGA-BR-6452                     TCGA-BR-6455 
"DEL PEAK  1(1P36.11) WILD-TYPE" "DEL PEAK  1(1P36.11) WILD-TYPE" 
                    TCGA-BR-6457                     TCGA-BR-6458 
"DEL PEAK  1(1P36.11) WILD-TYPE"   "DEL PEAK  1(1P36.11) MUTATED" 
                    TCGA-BR-6563                     TCGA-BR-6564 
"DEL PEAK  1(1P36.11) WILD-TYPE" "DEL PEAK  1(1P36.11) WILD-TYPE" 
                    TCGA-BR-6565                     TCGA-BR-6566 
  "DEL PEAK  1(1P36.11) MUTATED" "DEL PEAK  1(1P36.11) WILD-TYPE" 
                    TCGA-BR-6705                     TCGA-BR-6706 
"DEL PEAK  1(1P36.11) WILD-TYPE" "DEL PEAK  1(1P36.11) WILD-TYPE" 
                    TCGA-BR-6707                     TCGA-BR-6709 
"DEL PEAK  1(1P36.11) WILD-TYPE" "DEL PEAK  1(1P36.11) WILD-TYPE" 
                    TCGA-BR-6710                     TCGA-BR-6801 
"DEL PEAK  1(1P36.11) WILD-TYPE" "DEL PEAK  1(1P36.11) WILD-TYPE" 
                    TCGA-BR-6802                     TCGA-BR-6803 
"DEL PEAK  1(1P36.11) WILD-TYPE" "DEL PEAK  1(1P36.11) WILD-TYPE" 
                    TCGA-BR-6852                     TCGA-BR-7196 
"DEL PEAK  1(1P36.11) WILD-TYPE" "DEL PEAK  1(1P36.11) WILD-TYPE" 
                    TCGA-BR-7197                     TCGA-BR-7703 
"DEL PEAK  1(1P36.11) WILD-TYPE" "DEL PEAK  1(1P36.11) WILD-TYPE" 
                    TCGA-BR-7704                     TCGA-BR-7707 
"DEL PEAK  1(1P36.11) WILD-TYPE" "DEL PEAK  1(1P36.11) WILD-TYPE" 
                    TCGA-BR-7715                     TCGA-BR-7716 
"DEL PEAK  1(1P36.11) WILD-TYPE" "DEL PEAK  1(1P36.11) WILD-TYPE" 
                    TCGA-BR-7717                     TCGA-BR-7722 
"DEL PEAK  1(1P36.11) WILD-TYPE" "DEL PEAK  1(1P36.11) WILD-TYPE" 
                    TCGA-BR-7723                     TCGA-BR-7851 
"DEL PEAK  1(1P36.11) WILD-TYPE" "DEL PEAK  1(1P36.11) WILD-TYPE" 
                    TCGA-BR-7901                     TCGA-BR-7957 
"DEL PEAK  1(1P36.11) WILD-TYPE" "DEL PEAK  1(1P36.11) WILD-TYPE" 
                    TCGA-BR-7958                     TCGA-BR-7959 
"DEL PEAK  1(1P36.11) WILD-TYPE" "DEL PEAK  1(1P36.11) WILD-TYPE" 
                    TCGA-BR-8059                     TCGA-BR-8060 
"DEL PEAK  1(1P36.11) WILD-TYPE" "DEL PEAK  1(1P36.11) WILD-TYPE" 
                    TCGA-BR-8077                     TCGA-BR-8078 
"DEL PEAK  1(1P36.11) WILD-TYPE" "DEL PEAK  1(1P36.11) WILD-TYPE" 
                    TCGA-BR-8080                     TCGA-BR-8081 
"DEL PEAK  1(1P36.11) WILD-TYPE" "DEL PEAK  1(1P36.11) WILD-TYPE" 
                    TCGA-BR-8284                     TCGA-BR-8285 
"DEL PEAK  1(1P36.11) WILD-TYPE" "DEL PEAK  1(1P36.11) WILD-TYPE" 
                    TCGA-BR-8286                     TCGA-BR-8289 
"DEL PEAK  1(1P36.11) WILD-TYPE" "DEL PEAK  1(1P36.11) WILD-TYPE" 
                    TCGA-BR-8291                     TCGA-BR-8295 
"DEL PEAK  1(1P36.11) WILD-TYPE" "DEL PEAK  1(1P36.11) WILD-TYPE" 
                    TCGA-BR-8296                     TCGA-BR-8297 
"DEL PEAK  1(1P36.11) WILD-TYPE" "DEL PEAK  1(1P36.11) WILD-TYPE" 
                    TCGA-CD-5798                     TCGA-CD-5799 
"DEL PEAK  1(1P36.11) WILD-TYPE"   "DEL PEAK  1(1P36.11) MUTATED" 
                    TCGA-CD-5800                     TCGA-CD-5801 
"DEL PEAK  1(1P36.11) WILD-TYPE" "DEL PEAK  1(1P36.11) WILD-TYPE" 
                    TCGA-CD-5802                     TCGA-CD-5803 
"DEL PEAK  1(1P36.11) WILD-TYPE" "DEL PEAK  1(1P36.11) WILD-TYPE" 
                    TCGA-CG-4300                     TCGA-CG-4301 
  "DEL PEAK  1(1P36.11) MUTATED"   "DEL PEAK  1(1P36.11) MUTATED" 
                    TCGA-CG-4304                     TCGA-CG-4305 
"DEL PEAK  1(1P36.11) WILD-TYPE" "DEL PEAK  1(1P36.11) WILD-TYPE" 
                    TCGA-CG-4306                     TCGA-CG-4436 
"DEL PEAK  1(1P36.11) WILD-TYPE"   "DEL PEAK  1(1P36.11) MUTATED" 
                    TCGA-CG-4437                     TCGA-CG-4438 
  "DEL PEAK  1(1P36.11) MUTATED"   "DEL PEAK  1(1P36.11) MUTATED" 
                    TCGA-CG-4440                     TCGA-CG-4441 
"DEL PEAK  1(1P36.11) WILD-TYPE"   "DEL PEAK  1(1P36.11) MUTATED" 
                    TCGA-CG-4443                     TCGA-CG-4444 
  "DEL PEAK  1(1P36.11) MUTATED"   "DEL PEAK  1(1P36.11) MUTATED" 
                    TCGA-CG-4449                     TCGA-CG-4455 
  "DEL PEAK  1(1P36.11) MUTATED" "DEL PEAK  1(1P36.11) WILD-TYPE" 
                    TCGA-CG-4460                     TCGA-CG-4462 
"DEL PEAK  1(1P36.11) WILD-TYPE" "DEL PEAK  1(1P36.11) WILD-TYPE" 
                    TCGA-CG-4465                     TCGA-CG-4466 
"DEL PEAK  1(1P36.11) WILD-TYPE" "DEL PEAK  1(1P36.11) WILD-TYPE" 
                    TCGA-CG-4469                     TCGA-CG-4472 
  "DEL PEAK  1(1P36.11) MUTATED" "DEL PEAK  1(1P36.11) WILD-TYPE" 
                    TCGA-CG-4474                     TCGA-CG-4477 
"DEL PEAK  1(1P36.11) WILD-TYPE"   "DEL PEAK  1(1P36.11) MUTATED" 
                    TCGA-CG-5716                     TCGA-CG-5717 
"DEL PEAK  1(1P36.11) WILD-TYPE" "DEL PEAK  1(1P36.11) WILD-TYPE" 
                    TCGA-CG-5718                     TCGA-CG-5719 
"DEL PEAK  1(1P36.11) WILD-TYPE"   "DEL PEAK  1(1P36.11) MUTATED" 
                    TCGA-CG-5720                     TCGA-CG-5721 
"DEL PEAK  1(1P36.11) WILD-TYPE" "DEL PEAK  1(1P36.11) WILD-TYPE" 
                    TCGA-CG-5722                     TCGA-CG-5723 
"DEL PEAK  1(1P36.11) WILD-TYPE" "DEL PEAK  1(1P36.11) WILD-TYPE" 
                    TCGA-CG-5724                     TCGA-CG-5725 
  "DEL PEAK  1(1P36.11) MUTATED"   "DEL PEAK  1(1P36.11) MUTATED" 
                    TCGA-CG-5726                     TCGA-CG-5727 
"DEL PEAK  1(1P36.11) WILD-TYPE" "DEL PEAK  1(1P36.11) WILD-TYPE" 
                    TCGA-CG-5728                     TCGA-CG-5730 
"DEL PEAK  1(1P36.11) WILD-TYPE"   "DEL PEAK  1(1P36.11) MUTATED" 
                    TCGA-CG-5732                     TCGA-CG-5733 
"DEL PEAK  1(1P36.11) WILD-TYPE" "DEL PEAK  1(1P36.11) WILD-TYPE" 
                    TCGA-CG-5734                     TCGA-D7-5577 
"DEL PEAK  1(1P36.11) WILD-TYPE" "DEL PEAK  1(1P36.11) WILD-TYPE" 
                    TCGA-D7-5578                     TCGA-D7-5579 
"DEL PEAK  1(1P36.11) WILD-TYPE"   "DEL PEAK  1(1P36.11) MUTATED" 
                    TCGA-D7-6518                     TCGA-D7-6519 
"DEL PEAK  1(1P36.11) WILD-TYPE"   "DEL PEAK  1(1P36.11) MUTATED" 
                    TCGA-D7-6520                     TCGA-D7-6521 
"DEL PEAK  1(1P36.11) WILD-TYPE" "DEL PEAK  1(1P36.11) WILD-TYPE" 
                    TCGA-D7-6522                     TCGA-D7-6524 
"DEL PEAK  1(1P36.11) WILD-TYPE" "DEL PEAK  1(1P36.11) WILD-TYPE" 
                    TCGA-D7-6525                     TCGA-D7-6526 
"DEL PEAK  1(1P36.11) WILD-TYPE"   "DEL PEAK  1(1P36.11) MUTATED" 
                    TCGA-D7-6527                     TCGA-D7-6528 
  "DEL PEAK  1(1P36.11) MUTATED"   "DEL PEAK  1(1P36.11) MUTATED" 
                    TCGA-D7-6815                     TCGA-D7-6817 
"DEL PEAK  1(1P36.11) WILD-TYPE"   "DEL PEAK  1(1P36.11) MUTATED" 
                    TCGA-D7-6818                     TCGA-D7-6820 
"DEL PEAK  1(1P36.11) WILD-TYPE" "DEL PEAK  1(1P36.11) WILD-TYPE" 
                    TCGA-D7-6822                     TCGA-EQ-5647 
  "DEL PEAK  1(1P36.11) MUTATED"   "DEL PEAK  1(1P36.11) MUTATED" 
                    TCGA-EQ-8122                     TCGA-F1-6177 
  "DEL PEAK  1(1P36.11) MUTATED" "DEL PEAK  1(1P36.11) WILD-TYPE" 
                    TCGA-F1-6874                     TCGA-F1-6875 
"DEL PEAK  1(1P36.11) WILD-TYPE" "DEL PEAK  1(1P36.11) WILD-TYPE" 
                    TCGA-FP-7735                     TCGA-FP-7829 
"DEL PEAK  1(1P36.11) WILD-TYPE" "DEL PEAK  1(1P36.11) WILD-TYPE" 
                    TCGA-FP-7916                     TCGA-FP-7998 
"DEL PEAK  1(1P36.11) WILD-TYPE" "DEL PEAK  1(1P36.11) WILD-TYPE" 
                    TCGA-HJ-7597                     TCGA-IN-7806 
"DEL PEAK  1(1P36.11) WILD-TYPE" "DEL PEAK  1(1P36.11) WILD-TYPE" 
                    TCGA-IN-7808                     TCGA-IP-7968 
"DEL PEAK  1(1P36.11) WILD-TYPE" "DEL PEAK  1(1P36.11) WILD-TYPE" 
                    TCGA-B7-5816                     TCGA-B7-5818 
  "DEL PEAK  1(1P36.11) MUTATED" "DEL PEAK  1(1P36.11) WILD-TYPE" 
                    TCGA-BR-6452                     TCGA-BR-6455 
"DEL PEAK  1(1P36.11) WILD-TYPE" "DEL PEAK  1(1P36.11) WILD-TYPE" 
                    TCGA-BR-6457                     TCGA-BR-6458 
"DEL PEAK  1(1P36.11) WILD-TYPE"   "DEL PEAK  1(1P36.11) MUTATED" 
                    TCGA-BR-6563                     TCGA-BR-6564 
"DEL PEAK  1(1P36.11) WILD-TYPE" "DEL PEAK  1(1P36.11) WILD-TYPE" 
                    TCGA-BR-6565                     TCGA-BR-6566 
  "DEL PEAK  1(1P36.11) MUTATED" "DEL PEAK  1(1P36.11) WILD-TYPE" 
                    TCGA-BR-6705                     TCGA-BR-6706 
"DEL PEAK  1(1P36.11) WILD-TYPE" "DEL PEAK  1(1P36.11) WILD-TYPE" 
                    TCGA-BR-6707                     TCGA-BR-6709 
"DEL PEAK  1(1P36.11) WILD-TYPE" "DEL PEAK  1(1P36.11) WILD-TYPE" 
                    TCGA-BR-6710                     TCGA-BR-6801 
"DEL PEAK  1(1P36.11) WILD-TYPE" "DEL PEAK  1(1P36.11) WILD-TYPE" 
                    TCGA-BR-6802                     TCGA-BR-6803 
"DEL PEAK  1(1P36.11) WILD-TYPE" "DEL PEAK  1(1P36.11) WILD-TYPE" 
                    TCGA-BR-6852                     TCGA-BR-7196 
"DEL PEAK  1(1P36.11) WILD-TYPE" "DEL PEAK  1(1P36.11) WILD-TYPE" 
                    TCGA-BR-7197                     TCGA-BR-7703 
"DEL PEAK  1(1P36.11) WILD-TYPE" "DEL PEAK  1(1P36.11) WILD-TYPE" 
                    TCGA-BR-7704                     TCGA-BR-7707 
"DEL PEAK  1(1P36.11) WILD-TYPE" "DEL PEAK  1(1P36.11) WILD-TYPE" 
                    TCGA-BR-7715                     TCGA-BR-7716 
"DEL PEAK  1(1P36.11) WILD-TYPE" "DEL PEAK  1(1P36.11) WILD-TYPE" 
                    TCGA-BR-7717                     TCGA-BR-7722 
"DEL PEAK  1(1P36.11) WILD-TYPE" "DEL PEAK  1(1P36.11) WILD-TYPE" 
                    TCGA-BR-7723                     TCGA-BR-7851 
"DEL PEAK  1(1P36.11) WILD-TYPE" "DEL PEAK  1(1P36.11) WILD-TYPE" 
                    TCGA-BR-7901                     TCGA-BR-7957 
"DEL PEAK  1(1P36.11) WILD-TYPE" "DEL PEAK  1(1P36.11) WILD-TYPE" 
                    TCGA-BR-7958                     TCGA-BR-7959 
"DEL PEAK  1(1P36.11) WILD-TYPE" "DEL PEAK  1(1P36.11) WILD-TYPE" 
                    TCGA-BR-8059                     TCGA-BR-8060 
"DEL PEAK  1(1P36.11) WILD-TYPE" "DEL PEAK  1(1P36.11) WILD-TYPE" 
                    TCGA-BR-8077                     TCGA-BR-8078 
"DEL PEAK  1(1P36.11) WILD-TYPE" "DEL PEAK  1(1P36.11) WILD-TYPE" 
                    TCGA-BR-8080                     TCGA-BR-8081 
"DEL PEAK  1(1P36.11) WILD-TYPE" "DEL PEAK  1(1P36.11) WILD-TYPE" 
                    TCGA-BR-8284                     TCGA-BR-8285 
"DEL PEAK  1(1P36.11) WILD-TYPE" "DEL PEAK  1(1P36.11) WILD-TYPE" 
                    TCGA-BR-8286                     TCGA-BR-8289 
"DEL PEAK  1(1P36.11) WILD-TYPE" "DEL PEAK  1(1P36.11) WILD-TYPE" 
                    TCGA-BR-8291                     TCGA-BR-8295 
"DEL PEAK  1(1P36.11) WILD-TYPE" "DEL PEAK  1(1P36.11) WILD-TYPE" 
                    TCGA-BR-8296                     TCGA-BR-8297 
"DEL PEAK  1(1P36.11) WILD-TYPE" "DEL PEAK  1(1P36.11) WILD-TYPE" 
                    TCGA-CD-5798                     TCGA-CD-5799 
"DEL PEAK  1(1P36.11) WILD-TYPE"   "DEL PEAK  1(1P36.11) MUTATED" 
                    TCGA-CD-5800                     TCGA-CD-5801 
"DEL PEAK  1(1P36.11) WILD-TYPE" "DEL PEAK  1(1P36.11) WILD-TYPE" 
                    TCGA-CD-5802                     TCGA-CD-5803 
"DEL PEAK  1(1P36.11) WILD-TYPE" "DEL PEAK  1(1P36.11) WILD-TYPE" 
                    TCGA-CG-4300                     TCGA-CG-4301 
  "DEL PEAK  1(1P36.11) MUTATED"   "DEL PEAK  1(1P36.11) MUTATED" 
                    TCGA-CG-4304                     TCGA-CG-4305 
"DEL PEAK  1(1P36.11) WILD-TYPE" "DEL PEAK  1(1P36.11) WILD-TYPE" 
                    TCGA-CG-4306                     TCGA-CG-4436 
"DEL PEAK  1(1P36.11) WILD-TYPE"   "DEL PEAK  1(1P36.11) MUTATED" 
                    TCGA-CG-4437                     TCGA-CG-4438 
  "DEL PEAK  1(1P36.11) MUTATED"   "DEL PEAK  1(1P36.11) MUTATED" 
                    TCGA-CG-4440                     TCGA-CG-4441 
"DEL PEAK  1(1P36.11) WILD-TYPE"   "DEL PEAK  1(1P36.11) MUTATED" 
                    TCGA-CG-4443                     TCGA-CG-4444 
  "DEL PEAK  1(1P36.11) MUTATED"   "DEL PEAK  1(1P36.11) MUTATED" 
                    TCGA-CG-4449                     TCGA-CG-4455 
  "DEL PEAK  1(1P36.11) MUTATED" "DEL PEAK  1(1P36.11) WILD-TYPE" 
                    TCGA-CG-4460                     TCGA-CG-4462 
"DEL PEAK  1(1P36.11) WILD-TYPE" "DEL PEAK  1(1P36.11) WILD-TYPE" 
                    TCGA-CG-4465                     TCGA-CG-4466 
"DEL PEAK  1(1P36.11) WILD-TYPE" "DEL PEAK  1(1P36.11) WILD-TYPE" 
                    TCGA-CG-4469                     TCGA-CG-4472 
  "DEL PEAK  1(1P36.11) MUTATED" "DEL PEAK  1(1P36.11) WILD-TYPE" 
                    TCGA-CG-4474                     TCGA-CG-4477 
"DEL PEAK  1(1P36.11) WILD-TYPE"   "DEL PEAK  1(1P36.11) MUTATED" 
                    TCGA-CG-5716                     TCGA-CG-5717 
"DEL PEAK  1(1P36.11) WILD-TYPE" "DEL PEAK  1(1P36.11) WILD-TYPE" 
                    TCGA-CG-5718                     TCGA-CG-5719 
"DEL PEAK  1(1P36.11) WILD-TYPE"   "DEL PEAK  1(1P36.11) MUTATED" 
                    TCGA-CG-5720                     TCGA-CG-5721 
"DEL PEAK  1(1P36.11) WILD-TYPE" "DEL PEAK  1(1P36.11) WILD-TYPE" 
                    TCGA-CG-5722                     TCGA-CG-5723 
"DEL PEAK  1(1P36.11) WILD-TYPE" "DEL PEAK  1(1P36.11) WILD-TYPE" 
                    TCGA-CG-5724                     TCGA-CG-5725 
  "DEL PEAK  1(1P36.11) MUTATED"   "DEL PEAK  1(1P36.11) MUTATED" 
                    TCGA-CG-5726                     TCGA-CG-5727 
"DEL PEAK  1(1P36.11) WILD-TYPE" "DEL PEAK  1(1P36.11) WILD-TYPE" 
                    TCGA-CG-5728                     TCGA-CG-5730 
"DEL PEAK  1(1P36.11) WILD-TYPE"   "DEL PEAK  1(1P36.11) MUTATED" 
                    TCGA-CG-5732                     TCGA-CG-5733 
"DEL PEAK  1(1P36.11) WILD-TYPE" "DEL PEAK  1(1P36.11) WILD-TYPE" 
                    TCGA-CG-5734                     TCGA-D7-5577 
"DEL PEAK  1(1P36.11) WILD-TYPE" "DEL PEAK  1(1P36.11) WILD-TYPE" 
                    TCGA-D7-5578                     TCGA-D7-5579 
"DEL PEAK  1(1P36.11) WILD-TYPE"   "DEL PEAK  1(1P36.11) MUTATED" 
                    TCGA-D7-6518                     TCGA-D7-6519 
"DEL PEAK  1(1P36.11) WILD-TYPE"   "DEL PEAK  1(1P36.11) MUTATED" 
                    TCGA-D7-6520                     TCGA-D7-6521 
"DEL PEAK  1(1P36.11) WILD-TYPE" "DEL PEAK  1(1P36.11) WILD-TYPE" 
                    TCGA-D7-6522                     TCGA-D7-6524 
"DEL PEAK  1(1P36.11) WILD-TYPE" "DEL PEAK  1(1P36.11) WILD-TYPE" 
                    TCGA-D7-6525                     TCGA-D7-6526 
"DEL PEAK  1(1P36.11) WILD-TYPE"   "DEL PEAK  1(1P36.11) MUTATED" 
                    TCGA-D7-6527                     TCGA-D7-6528 
  "DEL PEAK  1(1P36.11) MUTATED"   "DEL PEAK  1(1P36.11) MUTATED" 
                    TCGA-D7-6815                     TCGA-D7-6817 
"DEL PEAK  1(1P36.11) WILD-TYPE"   "DEL PEAK  1(1P36.11) MUTATED" 
                    TCGA-D7-6818                     TCGA-D7-6820 
"DEL PEAK  1(1P36.11) WILD-TYPE" "DEL PEAK  1(1P36.11) WILD-TYPE" 
                    TCGA-D7-6822                     TCGA-EQ-5647 
  "DEL PEAK  1(1P36.11) MUTATED"   "DEL PEAK  1(1P36.11) MUTATED" 
                    TCGA-EQ-8122                     TCGA-F1-6177 
  "DEL PEAK  1(1P36.11) MUTATED" "DEL PEAK  1(1P36.11) WILD-TYPE" 
                    TCGA-F1-6874                     TCGA-F1-6875 
"DEL PEAK  1(1P36.11) WILD-TYPE" "DEL PEAK  1(1P36.11) WILD-TYPE" 
                    TCGA-FP-7735                     TCGA-FP-7829 
"DEL PEAK  1(1P36.11) WILD-TYPE" "DEL PEAK  1(1P36.11) WILD-TYPE" 
                    TCGA-FP-7916                     TCGA-FP-7998 
"DEL PEAK  1(1P36.11) WILD-TYPE" "DEL PEAK  1(1P36.11) WILD-TYPE" 
                    TCGA-HJ-7597                     TCGA-IN-7806 
"DEL PEAK  1(1P36.11) WILD-TYPE" "DEL PEAK  1(1P36.11) WILD-TYPE" 
                    TCGA-IN-7808                     TCGA-IP-7968 
"DEL PEAK  1(1P36.11) WILD-TYPE" "DEL PEAK  1(1P36.11) WILD-TYPE" 
[1] "hr=" "1.1"
D27V2, continuous
D27V3, binary
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  DEL PEAK  1(1P36.11) MUTATED     14   26
  DEL PEAK  1(1P36.11) WILD-TYPE   51   70
        clus
vv       DEL PEAK  1(1P36.11) MUTATED DEL PEAK  1(1P36.11) WILD-TYPE
  FEMALE                           14                             51
  MALE                             26                             70
D27V4, multiclass
D27V5, multiclass
    clus
vv   DEL PEAK  1(1P36.11) MUTATED DEL PEAK  1(1P36.11) WILD-TYPE
  T1                            1                              5
  T2                           18                             35
  T3                           12                             47
  T4                            5                             28
D27V6, multiclass
    clus
vv   DEL PEAK  1(1P36.11) MUTATED DEL PEAK  1(1P36.11) WILD-TYPE
  N0                           11                             39
  N1                           13                             44
  N2                            6                             18
  N3                            5                             14
D27V7, multiclass
    clus
vv   DEL PEAK  1(1P36.11) MUTATED DEL PEAK  1(1P36.11) WILD-TYPE
  M0                           33                             99
  M1                            5                             13
  MX                            2                              9
D27V8, multiclass
     clus
vv    DEL PEAK  1(1P36.11) MUTATED DEL PEAK  1(1P36.11) WILD-TYPE
  I                              7                             18
  II                            10                             33
  III                            9                             39
  IV                             8                             21
D27V9, binary
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  DEL PEAK  1(1P36.11) MUTATED     38    2
  DEL PEAK  1(1P36.11) WILD-TYPE  118    3
     clus
vv    DEL PEAK  1(1P36.11) MUTATED DEL PEAK  1(1P36.11) WILD-TYPE
  NO                             2                              3
  YES                           38                            118

Clustering(28) Variable = Del Peak  2(1p31.1) mutation analysis
D28V1, survival
                   TCGA-B7-5816                    TCGA-B7-5818 
"DEL PEAK  2(1P31.1) WILD-TYPE" "DEL PEAK  2(1P31.1) WILD-TYPE" 
                   TCGA-BR-6452                    TCGA-BR-6455 
"DEL PEAK  2(1P31.1) WILD-TYPE" "DEL PEAK  2(1P31.1) WILD-TYPE" 
                   TCGA-BR-6457                    TCGA-BR-6458 
"DEL PEAK  2(1P31.1) WILD-TYPE" "DEL PEAK  2(1P31.1) WILD-TYPE" 
                   TCGA-BR-6563                    TCGA-BR-6564 
"DEL PEAK  2(1P31.1) WILD-TYPE" "DEL PEAK  2(1P31.1) WILD-TYPE" 
                   TCGA-BR-6565                    TCGA-BR-6566 
  "DEL PEAK  2(1P31.1) MUTATED" "DEL PEAK  2(1P31.1) WILD-TYPE" 
                   TCGA-BR-6705                    TCGA-BR-6706 
"DEL PEAK  2(1P31.1) WILD-TYPE" "DEL PEAK  2(1P31.1) WILD-TYPE" 
                   TCGA-BR-6707                    TCGA-BR-6709 
"DEL PEAK  2(1P31.1) WILD-TYPE" "DEL PEAK  2(1P31.1) WILD-TYPE" 
                   TCGA-BR-6710                    TCGA-BR-6801 
"DEL PEAK  2(1P31.1) WILD-TYPE" "DEL PEAK  2(1P31.1) WILD-TYPE" 
                   TCGA-BR-6802                    TCGA-BR-6803 
"DEL PEAK  2(1P31.1) WILD-TYPE" "DEL PEAK  2(1P31.1) WILD-TYPE" 
                   TCGA-BR-6852                    TCGA-BR-7196 
"DEL PEAK  2(1P31.1) WILD-TYPE" "DEL PEAK  2(1P31.1) WILD-TYPE" 
                   TCGA-BR-7197                    TCGA-BR-7703 
"DEL PEAK  2(1P31.1) WILD-TYPE"   "DEL PEAK  2(1P31.1) MUTATED" 
                   TCGA-BR-7704                    TCGA-BR-7707 
"DEL PEAK  2(1P31.1) WILD-TYPE" "DEL PEAK  2(1P31.1) WILD-TYPE" 
                   TCGA-BR-7715                    TCGA-BR-7716 
"DEL PEAK  2(1P31.1) WILD-TYPE" "DEL PEAK  2(1P31.1) WILD-TYPE" 
                   TCGA-BR-7717                    TCGA-BR-7722 
"DEL PEAK  2(1P31.1) WILD-TYPE" "DEL PEAK  2(1P31.1) WILD-TYPE" 
                   TCGA-BR-7723                    TCGA-BR-7851 
"DEL PEAK  2(1P31.1) WILD-TYPE" "DEL PEAK  2(1P31.1) WILD-TYPE" 
                   TCGA-BR-7901                    TCGA-BR-7957 
"DEL PEAK  2(1P31.1) WILD-TYPE" "DEL PEAK  2(1P31.1) WILD-TYPE" 
                   TCGA-BR-7958                    TCGA-BR-7959 
"DEL PEAK  2(1P31.1) WILD-TYPE" "DEL PEAK  2(1P31.1) WILD-TYPE" 
                   TCGA-BR-8059                    TCGA-BR-8060 
"DEL PEAK  2(1P31.1) WILD-TYPE" "DEL PEAK  2(1P31.1) WILD-TYPE" 
                   TCGA-BR-8077                    TCGA-BR-8078 
"DEL PEAK  2(1P31.1) WILD-TYPE" "DEL PEAK  2(1P31.1) WILD-TYPE" 
                   TCGA-BR-8080                    TCGA-BR-8081 
"DEL PEAK  2(1P31.1) WILD-TYPE" "DEL PEAK  2(1P31.1) WILD-TYPE" 
                   TCGA-BR-8284                    TCGA-BR-8285 
"DEL PEAK  2(1P31.1) WILD-TYPE" "DEL PEAK  2(1P31.1) WILD-TYPE" 
                   TCGA-BR-8286                    TCGA-BR-8289 
"DEL PEAK  2(1P31.1) WILD-TYPE" "DEL PEAK  2(1P31.1) WILD-TYPE" 
                   TCGA-BR-8291                    TCGA-BR-8295 
"DEL PEAK  2(1P31.1) WILD-TYPE" "DEL PEAK  2(1P31.1) WILD-TYPE" 
                   TCGA-BR-8296                    TCGA-BR-8297 
"DEL PEAK  2(1P31.1) WILD-TYPE" "DEL PEAK  2(1P31.1) WILD-TYPE" 
                   TCGA-CD-5798                    TCGA-CD-5799 
"DEL PEAK  2(1P31.1) WILD-TYPE"   "DEL PEAK  2(1P31.1) MUTATED" 
                   TCGA-CD-5800                    TCGA-CD-5801 
"DEL PEAK  2(1P31.1) WILD-TYPE" "DEL PEAK  2(1P31.1) WILD-TYPE" 
                   TCGA-CD-5802                    TCGA-CD-5803 
  "DEL PEAK  2(1P31.1) MUTATED" "DEL PEAK  2(1P31.1) WILD-TYPE" 
                   TCGA-CG-4300                    TCGA-CG-4301 
  "DEL PEAK  2(1P31.1) MUTATED"   "DEL PEAK  2(1P31.1) MUTATED" 
                   TCGA-CG-4304                    TCGA-CG-4305 
"DEL PEAK  2(1P31.1) WILD-TYPE" "DEL PEAK  2(1P31.1) WILD-TYPE" 
                   TCGA-CG-4306                    TCGA-CG-4436 
"DEL PEAK  2(1P31.1) WILD-TYPE"   "DEL PEAK  2(1P31.1) MUTATED" 
                   TCGA-CG-4437                    TCGA-CG-4438 
"DEL PEAK  2(1P31.1) WILD-TYPE"   "DEL PEAK  2(1P31.1) MUTATED" 
                   TCGA-CG-4440                    TCGA-CG-4441 
"DEL PEAK  2(1P31.1) WILD-TYPE" "DEL PEAK  2(1P31.1) WILD-TYPE" 
                   TCGA-CG-4443                    TCGA-CG-4444 
"DEL PEAK  2(1P31.1) WILD-TYPE" "DEL PEAK  2(1P31.1) WILD-TYPE" 
                   TCGA-CG-4449                    TCGA-CG-4455 
"DEL PEAK  2(1P31.1) WILD-TYPE" "DEL PEAK  2(1P31.1) WILD-TYPE" 
                   TCGA-CG-4460                    TCGA-CG-4462 
"DEL PEAK  2(1P31.1) WILD-TYPE" "DEL PEAK  2(1P31.1) WILD-TYPE" 
                   TCGA-CG-4465                    TCGA-CG-4466 
"DEL PEAK  2(1P31.1) WILD-TYPE" "DEL PEAK  2(1P31.1) WILD-TYPE" 
                   TCGA-CG-4469                    TCGA-CG-4472 
"DEL PEAK  2(1P31.1) WILD-TYPE" "DEL PEAK  2(1P31.1) WILD-TYPE" 
                   TCGA-CG-4474                    TCGA-CG-4477 
"DEL PEAK  2(1P31.1) WILD-TYPE" "DEL PEAK  2(1P31.1) WILD-TYPE" 
                   TCGA-CG-5716                    TCGA-CG-5717 
"DEL PEAK  2(1P31.1) WILD-TYPE" "DEL PEAK  2(1P31.1) WILD-TYPE" 
                   TCGA-CG-5718                    TCGA-CG-5719 
"DEL PEAK  2(1P31.1) WILD-TYPE"   "DEL PEAK  2(1P31.1) MUTATED" 
                   TCGA-CG-5720                    TCGA-CG-5721 
"DEL PEAK  2(1P31.1) WILD-TYPE" "DEL PEAK  2(1P31.1) WILD-TYPE" 
                   TCGA-CG-5722                    TCGA-CG-5723 
"DEL PEAK  2(1P31.1) WILD-TYPE" "DEL PEAK  2(1P31.1) WILD-TYPE" 
                   TCGA-CG-5724                    TCGA-CG-5725 
  "DEL PEAK  2(1P31.1) MUTATED" "DEL PEAK  2(1P31.1) WILD-TYPE" 
                   TCGA-CG-5726                    TCGA-CG-5727 
"DEL PEAK  2(1P31.1) WILD-TYPE" "DEL PEAK  2(1P31.1) WILD-TYPE" 
                   TCGA-CG-5728                    TCGA-CG-5730 
"DEL PEAK  2(1P31.1) WILD-TYPE"   "DEL PEAK  2(1P31.1) MUTATED" 
                   TCGA-CG-5732                    TCGA-CG-5733 
"DEL PEAK  2(1P31.1) WILD-TYPE" "DEL PEAK  2(1P31.1) WILD-TYPE" 
                   TCGA-CG-5734                    TCGA-D7-5577 
"DEL PEAK  2(1P31.1) WILD-TYPE" "DEL PEAK  2(1P31.1) WILD-TYPE" 
                   TCGA-D7-5578                    TCGA-D7-5579 
"DEL PEAK  2(1P31.1) WILD-TYPE"   "DEL PEAK  2(1P31.1) MUTATED" 
                   TCGA-D7-6518                    TCGA-D7-6519 
"DEL PEAK  2(1P31.1) WILD-TYPE"   "DEL PEAK  2(1P31.1) MUTATED" 
                   TCGA-D7-6520                    TCGA-D7-6521 
"DEL PEAK  2(1P31.1) WILD-TYPE" "DEL PEAK  2(1P31.1) WILD-TYPE" 
                   TCGA-D7-6522                    TCGA-D7-6524 
"DEL PEAK  2(1P31.1) WILD-TYPE" "DEL PEAK  2(1P31.1) WILD-TYPE" 
                   TCGA-D7-6525                    TCGA-D7-6526 
"DEL PEAK  2(1P31.1) WILD-TYPE"   "DEL PEAK  2(1P31.1) MUTATED" 
                   TCGA-D7-6527                    TCGA-D7-6528 
  "DEL PEAK  2(1P31.1) MUTATED"   "DEL PEAK  2(1P31.1) MUTATED" 
                   TCGA-D7-6815                    TCGA-D7-6817 
"DEL PEAK  2(1P31.1) WILD-TYPE" "DEL PEAK  2(1P31.1) WILD-TYPE" 
                   TCGA-D7-6818                    TCGA-D7-6820 
"DEL PEAK  2(1P31.1) WILD-TYPE" "DEL PEAK  2(1P31.1) WILD-TYPE" 
                   TCGA-D7-6822                    TCGA-EQ-5647 
  "DEL PEAK  2(1P31.1) MUTATED"   "DEL PEAK  2(1P31.1) MUTATED" 
                   TCGA-EQ-8122                    TCGA-F1-6177 
  "DEL PEAK  2(1P31.1) MUTATED" "DEL PEAK  2(1P31.1) WILD-TYPE" 
                   TCGA-F1-6874                    TCGA-F1-6875 
"DEL PEAK  2(1P31.1) WILD-TYPE" "DEL PEAK  2(1P31.1) WILD-TYPE" 
                   TCGA-FP-7735                    TCGA-FP-7829 
"DEL PEAK  2(1P31.1) WILD-TYPE"   "DEL PEAK  2(1P31.1) MUTATED" 
                   TCGA-FP-7916                    TCGA-FP-7998 
"DEL PEAK  2(1P31.1) WILD-TYPE" "DEL PEAK  2(1P31.1) WILD-TYPE" 
                   TCGA-HJ-7597                    TCGA-IN-7806 
"DEL PEAK  2(1P31.1) WILD-TYPE" "DEL PEAK  2(1P31.1) WILD-TYPE" 
                   TCGA-IN-7808                    TCGA-IP-7968 
"DEL PEAK  2(1P31.1) WILD-TYPE" "DEL PEAK  2(1P31.1) WILD-TYPE" 
                   TCGA-B7-5816                    TCGA-B7-5818 
"DEL PEAK  2(1P31.1) WILD-TYPE" "DEL PEAK  2(1P31.1) WILD-TYPE" 
                   TCGA-BR-6452                    TCGA-BR-6455 
"DEL PEAK  2(1P31.1) WILD-TYPE" "DEL PEAK  2(1P31.1) WILD-TYPE" 
                   TCGA-BR-6457                    TCGA-BR-6458 
"DEL PEAK  2(1P31.1) WILD-TYPE" "DEL PEAK  2(1P31.1) WILD-TYPE" 
                   TCGA-BR-6563                    TCGA-BR-6564 
"DEL PEAK  2(1P31.1) WILD-TYPE" "DEL PEAK  2(1P31.1) WILD-TYPE" 
                   TCGA-BR-6565                    TCGA-BR-6566 
  "DEL PEAK  2(1P31.1) MUTATED" "DEL PEAK  2(1P31.1) WILD-TYPE" 
                   TCGA-BR-6705                    TCGA-BR-6706 
"DEL PEAK  2(1P31.1) WILD-TYPE" "DEL PEAK  2(1P31.1) WILD-TYPE" 
                   TCGA-BR-6707                    TCGA-BR-6709 
"DEL PEAK  2(1P31.1) WILD-TYPE" "DEL PEAK  2(1P31.1) WILD-TYPE" 
                   TCGA-BR-6710                    TCGA-BR-6801 
"DEL PEAK  2(1P31.1) WILD-TYPE" "DEL PEAK  2(1P31.1) WILD-TYPE" 
                   TCGA-BR-6802                    TCGA-BR-6803 
"DEL PEAK  2(1P31.1) WILD-TYPE" "DEL PEAK  2(1P31.1) WILD-TYPE" 
                   TCGA-BR-6852                    TCGA-BR-7196 
"DEL PEAK  2(1P31.1) WILD-TYPE" "DEL PEAK  2(1P31.1) WILD-TYPE" 
                   TCGA-BR-7197                    TCGA-BR-7703 
"DEL PEAK  2(1P31.1) WILD-TYPE"   "DEL PEAK  2(1P31.1) MUTATED" 
                   TCGA-BR-7704                    TCGA-BR-7707 
"DEL PEAK  2(1P31.1) WILD-TYPE" "DEL PEAK  2(1P31.1) WILD-TYPE" 
                   TCGA-BR-7715                    TCGA-BR-7716 
"DEL PEAK  2(1P31.1) WILD-TYPE" "DEL PEAK  2(1P31.1) WILD-TYPE" 
                   TCGA-BR-7717                    TCGA-BR-7722 
"DEL PEAK  2(1P31.1) WILD-TYPE" "DEL PEAK  2(1P31.1) WILD-TYPE" 
                   TCGA-BR-7723                    TCGA-BR-7851 
"DEL PEAK  2(1P31.1) WILD-TYPE" "DEL PEAK  2(1P31.1) WILD-TYPE" 
                   TCGA-BR-7901                    TCGA-BR-7957 
"DEL PEAK  2(1P31.1) WILD-TYPE" "DEL PEAK  2(1P31.1) WILD-TYPE" 
                   TCGA-BR-7958                    TCGA-BR-7959 
"DEL PEAK  2(1P31.1) WILD-TYPE" "DEL PEAK  2(1P31.1) WILD-TYPE" 
                   TCGA-BR-8059                    TCGA-BR-8060 
"DEL PEAK  2(1P31.1) WILD-TYPE" "DEL PEAK  2(1P31.1) WILD-TYPE" 
                   TCGA-BR-8077                    TCGA-BR-8078 
"DEL PEAK  2(1P31.1) WILD-TYPE" "DEL PEAK  2(1P31.1) WILD-TYPE" 
                   TCGA-BR-8080                    TCGA-BR-8081 
"DEL PEAK  2(1P31.1) WILD-TYPE" "DEL PEAK  2(1P31.1) WILD-TYPE" 
                   TCGA-BR-8284                    TCGA-BR-8285 
"DEL PEAK  2(1P31.1) WILD-TYPE" "DEL PEAK  2(1P31.1) WILD-TYPE" 
                   TCGA-BR-8286                    TCGA-BR-8289 
"DEL PEAK  2(1P31.1) WILD-TYPE" "DEL PEAK  2(1P31.1) WILD-TYPE" 
                   TCGA-BR-8291                    TCGA-BR-8295 
"DEL PEAK  2(1P31.1) WILD-TYPE" "DEL PEAK  2(1P31.1) WILD-TYPE" 
                   TCGA-BR-8296                    TCGA-BR-8297 
"DEL PEAK  2(1P31.1) WILD-TYPE" "DEL PEAK  2(1P31.1) WILD-TYPE" 
                   TCGA-CD-5798                    TCGA-CD-5799 
"DEL PEAK  2(1P31.1) WILD-TYPE"   "DEL PEAK  2(1P31.1) MUTATED" 
                   TCGA-CD-5800                    TCGA-CD-5801 
"DEL PEAK  2(1P31.1) WILD-TYPE" "DEL PEAK  2(1P31.1) WILD-TYPE" 
                   TCGA-CD-5802                    TCGA-CD-5803 
  "DEL PEAK  2(1P31.1) MUTATED" "DEL PEAK  2(1P31.1) WILD-TYPE" 
                   TCGA-CG-4300                    TCGA-CG-4301 
  "DEL PEAK  2(1P31.1) MUTATED"   "DEL PEAK  2(1P31.1) MUTATED" 
                   TCGA-CG-4304                    TCGA-CG-4305 
"DEL PEAK  2(1P31.1) WILD-TYPE" "DEL PEAK  2(1P31.1) WILD-TYPE" 
                   TCGA-CG-4306                    TCGA-CG-4436 
"DEL PEAK  2(1P31.1) WILD-TYPE"   "DEL PEAK  2(1P31.1) MUTATED" 
                   TCGA-CG-4437                    TCGA-CG-4438 
"DEL PEAK  2(1P31.1) WILD-TYPE"   "DEL PEAK  2(1P31.1) MUTATED" 
                   TCGA-CG-4440                    TCGA-CG-4441 
"DEL PEAK  2(1P31.1) WILD-TYPE" "DEL PEAK  2(1P31.1) WILD-TYPE" 
                   TCGA-CG-4443                    TCGA-CG-4444 
"DEL PEAK  2(1P31.1) WILD-TYPE" "DEL PEAK  2(1P31.1) WILD-TYPE" 
                   TCGA-CG-4449                    TCGA-CG-4455 
"DEL PEAK  2(1P31.1) WILD-TYPE" "DEL PEAK  2(1P31.1) WILD-TYPE" 
                   TCGA-CG-4460                    TCGA-CG-4462 
"DEL PEAK  2(1P31.1) WILD-TYPE" "DEL PEAK  2(1P31.1) WILD-TYPE" 
                   TCGA-CG-4465                    TCGA-CG-4466 
"DEL PEAK  2(1P31.1) WILD-TYPE" "DEL PEAK  2(1P31.1) WILD-TYPE" 
                   TCGA-CG-4469                    TCGA-CG-4472 
"DEL PEAK  2(1P31.1) WILD-TYPE" "DEL PEAK  2(1P31.1) WILD-TYPE" 
                   TCGA-CG-4474                    TCGA-CG-4477 
"DEL PEAK  2(1P31.1) WILD-TYPE" "DEL PEAK  2(1P31.1) WILD-TYPE" 
                   TCGA-CG-5716                    TCGA-CG-5717 
"DEL PEAK  2(1P31.1) WILD-TYPE" "DEL PEAK  2(1P31.1) WILD-TYPE" 
                   TCGA-CG-5718                    TCGA-CG-5719 
"DEL PEAK  2(1P31.1) WILD-TYPE"   "DEL PEAK  2(1P31.1) MUTATED" 
                   TCGA-CG-5720                    TCGA-CG-5721 
"DEL PEAK  2(1P31.1) WILD-TYPE" "DEL PEAK  2(1P31.1) WILD-TYPE" 
                   TCGA-CG-5722                    TCGA-CG-5723 
"DEL PEAK  2(1P31.1) WILD-TYPE" "DEL PEAK  2(1P31.1) WILD-TYPE" 
                   TCGA-CG-5724                    TCGA-CG-5725 
  "DEL PEAK  2(1P31.1) MUTATED" "DEL PEAK  2(1P31.1) WILD-TYPE" 
                   TCGA-CG-5726                    TCGA-CG-5727 
"DEL PEAK  2(1P31.1) WILD-TYPE" "DEL PEAK  2(1P31.1) WILD-TYPE" 
                   TCGA-CG-5728                    TCGA-CG-5730 
"DEL PEAK  2(1P31.1) WILD-TYPE"   "DEL PEAK  2(1P31.1) MUTATED" 
                   TCGA-CG-5732                    TCGA-CG-5733 
"DEL PEAK  2(1P31.1) WILD-TYPE" "DEL PEAK  2(1P31.1) WILD-TYPE" 
                   TCGA-CG-5734                    TCGA-D7-5577 
"DEL PEAK  2(1P31.1) WILD-TYPE" "DEL PEAK  2(1P31.1) WILD-TYPE" 
                   TCGA-D7-5578                    TCGA-D7-5579 
"DEL PEAK  2(1P31.1) WILD-TYPE"   "DEL PEAK  2(1P31.1) MUTATED" 
                   TCGA-D7-6518                    TCGA-D7-6519 
"DEL PEAK  2(1P31.1) WILD-TYPE"   "DEL PEAK  2(1P31.1) MUTATED" 
                   TCGA-D7-6520                    TCGA-D7-6521 
"DEL PEAK  2(1P31.1) WILD-TYPE" "DEL PEAK  2(1P31.1) WILD-TYPE" 
                   TCGA-D7-6522                    TCGA-D7-6524 
"DEL PEAK  2(1P31.1) WILD-TYPE" "DEL PEAK  2(1P31.1) WILD-TYPE" 
                   TCGA-D7-6525                    TCGA-D7-6526 
"DEL PEAK  2(1P31.1) WILD-TYPE"   "DEL PEAK  2(1P31.1) MUTATED" 
                   TCGA-D7-6527                    TCGA-D7-6528 
  "DEL PEAK  2(1P31.1) MUTATED"   "DEL PEAK  2(1P31.1) MUTATED" 
                   TCGA-D7-6815                    TCGA-D7-6817 
"DEL PEAK  2(1P31.1) WILD-TYPE" "DEL PEAK  2(1P31.1) WILD-TYPE" 
                   TCGA-D7-6818                    TCGA-D7-6820 
"DEL PEAK  2(1P31.1) WILD-TYPE" "DEL PEAK  2(1P31.1) WILD-TYPE" 
                   TCGA-D7-6822                    TCGA-EQ-5647 
  "DEL PEAK  2(1P31.1) MUTATED"   "DEL PEAK  2(1P31.1) MUTATED" 
                   TCGA-EQ-8122                    TCGA-F1-6177 
  "DEL PEAK  2(1P31.1) MUTATED" "DEL PEAK  2(1P31.1) WILD-TYPE" 
                   TCGA-F1-6874                    TCGA-F1-6875 
"DEL PEAK  2(1P31.1) WILD-TYPE" "DEL PEAK  2(1P31.1) WILD-TYPE" 
                   TCGA-FP-7735                    TCGA-FP-7829 
"DEL PEAK  2(1P31.1) WILD-TYPE"   "DEL PEAK  2(1P31.1) MUTATED" 
                   TCGA-FP-7916                    TCGA-FP-7998 
"DEL PEAK  2(1P31.1) WILD-TYPE" "DEL PEAK  2(1P31.1) WILD-TYPE" 
                   TCGA-HJ-7597                    TCGA-IN-7806 
"DEL PEAK  2(1P31.1) WILD-TYPE" "DEL PEAK  2(1P31.1) WILD-TYPE" 
                   TCGA-IN-7808                    TCGA-IP-7968 
"DEL PEAK  2(1P31.1) WILD-TYPE" "DEL PEAK  2(1P31.1) WILD-TYPE" 
                   TCGA-B7-5816                    TCGA-B7-5818 
"DEL PEAK  2(1P31.1) WILD-TYPE" "DEL PEAK  2(1P31.1) WILD-TYPE" 
                   TCGA-BR-6452                    TCGA-BR-6455 
"DEL PEAK  2(1P31.1) WILD-TYPE" "DEL PEAK  2(1P31.1) WILD-TYPE" 
                   TCGA-BR-6457                    TCGA-BR-6458 
"DEL PEAK  2(1P31.1) WILD-TYPE" "DEL PEAK  2(1P31.1) WILD-TYPE" 
                   TCGA-BR-6563                    TCGA-BR-6564 
"DEL PEAK  2(1P31.1) WILD-TYPE" "DEL PEAK  2(1P31.1) WILD-TYPE" 
                   TCGA-BR-6565                    TCGA-BR-6566 
  "DEL PEAK  2(1P31.1) MUTATED" "DEL PEAK  2(1P31.1) WILD-TYPE" 
                   TCGA-BR-6705                    TCGA-BR-6706 
"DEL PEAK  2(1P31.1) WILD-TYPE" "DEL PEAK  2(1P31.1) WILD-TYPE" 
                   TCGA-BR-6707                    TCGA-BR-6709 
"DEL PEAK  2(1P31.1) WILD-TYPE" "DEL PEAK  2(1P31.1) WILD-TYPE" 
                   TCGA-BR-6710                    TCGA-BR-6801 
"DEL PEAK  2(1P31.1) WILD-TYPE" "DEL PEAK  2(1P31.1) WILD-TYPE" 
                   TCGA-BR-6802                    TCGA-BR-6803 
"DEL PEAK  2(1P31.1) WILD-TYPE" "DEL PEAK  2(1P31.1) WILD-TYPE" 
                   TCGA-BR-6852                    TCGA-BR-7196 
"DEL PEAK  2(1P31.1) WILD-TYPE" "DEL PEAK  2(1P31.1) WILD-TYPE" 
                   TCGA-BR-7197                    TCGA-BR-7703 
"DEL PEAK  2(1P31.1) WILD-TYPE"   "DEL PEAK  2(1P31.1) MUTATED" 
                   TCGA-BR-7704                    TCGA-BR-7707 
"DEL PEAK  2(1P31.1) WILD-TYPE" "DEL PEAK  2(1P31.1) WILD-TYPE" 
                   TCGA-BR-7715                    TCGA-BR-7716 
"DEL PEAK  2(1P31.1) WILD-TYPE" "DEL PEAK  2(1P31.1) WILD-TYPE" 
                   TCGA-BR-7717                    TCGA-BR-7722 
"DEL PEAK  2(1P31.1) WILD-TYPE" "DEL PEAK  2(1P31.1) WILD-TYPE" 
                   TCGA-BR-7723                    TCGA-BR-7851 
"DEL PEAK  2(1P31.1) WILD-TYPE" "DEL PEAK  2(1P31.1) WILD-TYPE" 
                   TCGA-BR-7901                    TCGA-BR-7957 
"DEL PEAK  2(1P31.1) WILD-TYPE" "DEL PEAK  2(1P31.1) WILD-TYPE" 
                   TCGA-BR-7958                    TCGA-BR-7959 
"DEL PEAK  2(1P31.1) WILD-TYPE" "DEL PEAK  2(1P31.1) WILD-TYPE" 
                   TCGA-BR-8059                    TCGA-BR-8060 
"DEL PEAK  2(1P31.1) WILD-TYPE" "DEL PEAK  2(1P31.1) WILD-TYPE" 
                   TCGA-BR-8077                    TCGA-BR-8078 
"DEL PEAK  2(1P31.1) WILD-TYPE" "DEL PEAK  2(1P31.1) WILD-TYPE" 
                   TCGA-BR-8080                    TCGA-BR-8081 
"DEL PEAK  2(1P31.1) WILD-TYPE" "DEL PEAK  2(1P31.1) WILD-TYPE" 
                   TCGA-BR-8284                    TCGA-BR-8285 
"DEL PEAK  2(1P31.1) WILD-TYPE" "DEL PEAK  2(1P31.1) WILD-TYPE" 
                   TCGA-BR-8286                    TCGA-BR-8289 
"DEL PEAK  2(1P31.1) WILD-TYPE" "DEL PEAK  2(1P31.1) WILD-TYPE" 
                   TCGA-BR-8291                    TCGA-BR-8295 
"DEL PEAK  2(1P31.1) WILD-TYPE" "DEL PEAK  2(1P31.1) WILD-TYPE" 
                   TCGA-BR-8296                    TCGA-BR-8297 
"DEL PEAK  2(1P31.1) WILD-TYPE" "DEL PEAK  2(1P31.1) WILD-TYPE" 
                   TCGA-CD-5798                    TCGA-CD-5799 
"DEL PEAK  2(1P31.1) WILD-TYPE"   "DEL PEAK  2(1P31.1) MUTATED" 
                   TCGA-CD-5800                    TCGA-CD-5801 
"DEL PEAK  2(1P31.1) WILD-TYPE" "DEL PEAK  2(1P31.1) WILD-TYPE" 
                   TCGA-CD-5802                    TCGA-CD-5803 
  "DEL PEAK  2(1P31.1) MUTATED" "DEL PEAK  2(1P31.1) WILD-TYPE" 
                   TCGA-CG-4300                    TCGA-CG-4301 
  "DEL PEAK  2(1P31.1) MUTATED"   "DEL PEAK  2(1P31.1) MUTATED" 
                   TCGA-CG-4304                    TCGA-CG-4305 
"DEL PEAK  2(1P31.1) WILD-TYPE" "DEL PEAK  2(1P31.1) WILD-TYPE" 
                   TCGA-CG-4306                    TCGA-CG-4436 
"DEL PEAK  2(1P31.1) WILD-TYPE"   "DEL PEAK  2(1P31.1) MUTATED" 
                   TCGA-CG-4437                    TCGA-CG-4438 
"DEL PEAK  2(1P31.1) WILD-TYPE"   "DEL PEAK  2(1P31.1) MUTATED" 
                   TCGA-CG-4440                    TCGA-CG-4441 
"DEL PEAK  2(1P31.1) WILD-TYPE" "DEL PEAK  2(1P31.1) WILD-TYPE" 
                   TCGA-CG-4443                    TCGA-CG-4444 
"DEL PEAK  2(1P31.1) WILD-TYPE" "DEL PEAK  2(1P31.1) WILD-TYPE" 
                   TCGA-CG-4449                    TCGA-CG-4455 
"DEL PEAK  2(1P31.1) WILD-TYPE" "DEL PEAK  2(1P31.1) WILD-TYPE" 
                   TCGA-CG-4460                    TCGA-CG-4462 
"DEL PEAK  2(1P31.1) WILD-TYPE" "DEL PEAK  2(1P31.1) WILD-TYPE" 
                   TCGA-CG-4465                    TCGA-CG-4466 
"DEL PEAK  2(1P31.1) WILD-TYPE" "DEL PEAK  2(1P31.1) WILD-TYPE" 
                   TCGA-CG-4469                    TCGA-CG-4472 
"DEL PEAK  2(1P31.1) WILD-TYPE" "DEL PEAK  2(1P31.1) WILD-TYPE" 
                   TCGA-CG-4474                    TCGA-CG-4477 
"DEL PEAK  2(1P31.1) WILD-TYPE" "DEL PEAK  2(1P31.1) WILD-TYPE" 
                   TCGA-CG-5716                    TCGA-CG-5717 
"DEL PEAK  2(1P31.1) WILD-TYPE" "DEL PEAK  2(1P31.1) WILD-TYPE" 
                   TCGA-CG-5718                    TCGA-CG-5719 
"DEL PEAK  2(1P31.1) WILD-TYPE"   "DEL PEAK  2(1P31.1) MUTATED" 
                   TCGA-CG-5720                    TCGA-CG-5721 
"DEL PEAK  2(1P31.1) WILD-TYPE" "DEL PEAK  2(1P31.1) WILD-TYPE" 
                   TCGA-CG-5722                    TCGA-CG-5723 
"DEL PEAK  2(1P31.1) WILD-TYPE" "DEL PEAK  2(1P31.1) WILD-TYPE" 
                   TCGA-CG-5724                    TCGA-CG-5725 
  "DEL PEAK  2(1P31.1) MUTATED" "DEL PEAK  2(1P31.1) WILD-TYPE" 
                   TCGA-CG-5726                    TCGA-CG-5727 
"DEL PEAK  2(1P31.1) WILD-TYPE" "DEL PEAK  2(1P31.1) WILD-TYPE" 
                   TCGA-CG-5728                    TCGA-CG-5730 
"DEL PEAK  2(1P31.1) WILD-TYPE"   "DEL PEAK  2(1P31.1) MUTATED" 
                   TCGA-CG-5732                    TCGA-CG-5733 
"DEL PEAK  2(1P31.1) WILD-TYPE" "DEL PEAK  2(1P31.1) WILD-TYPE" 
                   TCGA-CG-5734                    TCGA-D7-5577 
"DEL PEAK  2(1P31.1) WILD-TYPE" "DEL PEAK  2(1P31.1) WILD-TYPE" 
                   TCGA-D7-5578                    TCGA-D7-5579 
"DEL PEAK  2(1P31.1) WILD-TYPE"   "DEL PEAK  2(1P31.1) MUTATED" 
                   TCGA-D7-6518                    TCGA-D7-6519 
"DEL PEAK  2(1P31.1) WILD-TYPE"   "DEL PEAK  2(1P31.1) MUTATED" 
                   TCGA-D7-6520                    TCGA-D7-6521 
"DEL PEAK  2(1P31.1) WILD-TYPE" "DEL PEAK  2(1P31.1) WILD-TYPE" 
                   TCGA-D7-6522                    TCGA-D7-6524 
"DEL PEAK  2(1P31.1) WILD-TYPE" "DEL PEAK  2(1P31.1) WILD-TYPE" 
                   TCGA-D7-6525                    TCGA-D7-6526 
"DEL PEAK  2(1P31.1) WILD-TYPE"   "DEL PEAK  2(1P31.1) MUTATED" 
                   TCGA-D7-6527                    TCGA-D7-6528 
  "DEL PEAK  2(1P31.1) MUTATED"   "DEL PEAK  2(1P31.1) MUTATED" 
                   TCGA-D7-6815                    TCGA-D7-6817 
"DEL PEAK  2(1P31.1) WILD-TYPE" "DEL PEAK  2(1P31.1) WILD-TYPE" 
                   TCGA-D7-6818                    TCGA-D7-6820 
"DEL PEAK  2(1P31.1) WILD-TYPE" "DEL PEAK  2(1P31.1) WILD-TYPE" 
                   TCGA-D7-6822                    TCGA-EQ-5647 
  "DEL PEAK  2(1P31.1) MUTATED"   "DEL PEAK  2(1P31.1) MUTATED" 
                   TCGA-EQ-8122                    TCGA-F1-6177 
  "DEL PEAK  2(1P31.1) MUTATED" "DEL PEAK  2(1P31.1) WILD-TYPE" 
                   TCGA-F1-6874                    TCGA-F1-6875 
"DEL PEAK  2(1P31.1) WILD-TYPE" "DEL PEAK  2(1P31.1) WILD-TYPE" 
                   TCGA-FP-7735                    TCGA-FP-7829 
"DEL PEAK  2(1P31.1) WILD-TYPE"   "DEL PEAK  2(1P31.1) MUTATED" 
                   TCGA-FP-7916                    TCGA-FP-7998 
"DEL PEAK  2(1P31.1) WILD-TYPE" "DEL PEAK  2(1P31.1) WILD-TYPE" 
                   TCGA-HJ-7597                    TCGA-IN-7806 
"DEL PEAK  2(1P31.1) WILD-TYPE" "DEL PEAK  2(1P31.1) WILD-TYPE" 
                   TCGA-IN-7808                    TCGA-IP-7968 
"DEL PEAK  2(1P31.1) WILD-TYPE" "DEL PEAK  2(1P31.1) WILD-TYPE" 
[1] "hr=" "1.4"
D28V2, continuous
D28V3, binary
[1] "tbl2"
                               cls
clus                            [,1] [,2]
  DEL PEAK  2(1P31.1) MUTATED      9   17
  DEL PEAK  2(1P31.1) WILD-TYPE   56   79
        clus
vv       DEL PEAK  2(1P31.1) MUTATED DEL PEAK  2(1P31.1) WILD-TYPE
  FEMALE                           9                            56
  MALE                            17                            79
D28V4, multiclass
D28V5, multiclass
    clus
vv   DEL PEAK  2(1P31.1) MUTATED DEL PEAK  2(1P31.1) WILD-TYPE
  T1                           1                             5
  T2                           9                            44
  T3                          10                            49
  T4                           4                            29
D28V6, multiclass
    clus
vv   DEL PEAK  2(1P31.1) MUTATED DEL PEAK  2(1P31.1) WILD-TYPE
  N0                           8                            42
  N1                           9                            48
  N2                           4                            20
  N3                           2                            17
D28V7, multiclass
    clus
vv   DEL PEAK  2(1P31.1) MUTATED DEL PEAK  2(1P31.1) WILD-TYPE
  M0                          20                           112
  M1                           5                            13
  MX                           1                            10
D28V8, multiclass
     clus
vv    DEL PEAK  2(1P31.1) MUTATED DEL PEAK  2(1P31.1) WILD-TYPE
  I                             4                            21
  II                            8                            35
  III                           5                            43
  IV                            6                            23
D28V9, binary
[1] "tbl2"
                               cls
clus                            [,1] [,2]
  DEL PEAK  2(1P31.1) MUTATED     25    1
  DEL PEAK  2(1P31.1) WILD-TYPE  131    4
     clus
vv    DEL PEAK  2(1P31.1) MUTATED DEL PEAK  2(1P31.1) WILD-TYPE
  NO                            1                             4
  YES                          25                           131

Clustering(29) Variable = Del Peak  3(1q44) mutation analysis
D29V1, survival
                 TCGA-B7-5816                  TCGA-B7-5818 
"DEL PEAK  3(1Q44) WILD-TYPE" "DEL PEAK  3(1Q44) WILD-TYPE" 
                 TCGA-BR-6452                  TCGA-BR-6455 
"DEL PEAK  3(1Q44) WILD-TYPE" "DEL PEAK  3(1Q44) WILD-TYPE" 
                 TCGA-BR-6457                  TCGA-BR-6458 
"DEL PEAK  3(1Q44) WILD-TYPE" "DEL PEAK  3(1Q44) WILD-TYPE" 
                 TCGA-BR-6563                  TCGA-BR-6564 
"DEL PEAK  3(1Q44) WILD-TYPE" "DEL PEAK  3(1Q44) WILD-TYPE" 
                 TCGA-BR-6565                  TCGA-BR-6566 
"DEL PEAK  3(1Q44) WILD-TYPE" "DEL PEAK  3(1Q44) WILD-TYPE" 
                 TCGA-BR-6705                  TCGA-BR-6706 
"DEL PEAK  3(1Q44) WILD-TYPE" "DEL PEAK  3(1Q44) WILD-TYPE" 
                 TCGA-BR-6707                  TCGA-BR-6709 
"DEL PEAK  3(1Q44) WILD-TYPE" "DEL PEAK  3(1Q44) WILD-TYPE" 
                 TCGA-BR-6710                  TCGA-BR-6801 
"DEL PEAK  3(1Q44) WILD-TYPE" "DEL PEAK  3(1Q44) WILD-TYPE" 
                 TCGA-BR-6802                  TCGA-BR-6803 
"DEL PEAK  3(1Q44) WILD-TYPE" "DEL PEAK  3(1Q44) WILD-TYPE" 
                 TCGA-BR-6852                  TCGA-BR-7196 
"DEL PEAK  3(1Q44) WILD-TYPE" "DEL PEAK  3(1Q44) WILD-TYPE" 
                 TCGA-BR-7197                  TCGA-BR-7703 
"DEL PEAK  3(1Q44) WILD-TYPE" "DEL PEAK  3(1Q44) WILD-TYPE" 
                 TCGA-BR-7704                  TCGA-BR-7707 
"DEL PEAK  3(1Q44) WILD-TYPE" "DEL PEAK  3(1Q44) WILD-TYPE" 
                 TCGA-BR-7715                  TCGA-BR-7716 
"DEL PEAK  3(1Q44) WILD-TYPE" "DEL PEAK  3(1Q44) WILD-TYPE" 
                 TCGA-BR-7717                  TCGA-BR-7722 
"DEL PEAK  3(1Q44) WILD-TYPE" "DEL PEAK  3(1Q44) WILD-TYPE" 
                 TCGA-BR-7723                  TCGA-BR-7851 
"DEL PEAK  3(1Q44) WILD-TYPE" "DEL PEAK  3(1Q44) WILD-TYPE" 
                 TCGA-BR-7901                  TCGA-BR-7957 
"DEL PEAK  3(1Q44) WILD-TYPE" "DEL PEAK  3(1Q44) WILD-TYPE" 
                 TCGA-BR-7958                  TCGA-BR-7959 
"DEL PEAK  3(1Q44) WILD-TYPE" "DEL PEAK  3(1Q44) WILD-TYPE" 
                 TCGA-BR-8059                  TCGA-BR-8060 
"DEL PEAK  3(1Q44) WILD-TYPE" "DEL PEAK  3(1Q44) WILD-TYPE" 
                 TCGA-BR-8077                  TCGA-BR-8078 
"DEL PEAK  3(1Q44) WILD-TYPE" "DEL PEAK  3(1Q44) WILD-TYPE" 
                 TCGA-BR-8080                  TCGA-BR-8081 
"DEL PEAK  3(1Q44) WILD-TYPE" "DEL PEAK  3(1Q44) WILD-TYPE" 
                 TCGA-BR-8284                  TCGA-BR-8285 
"DEL PEAK  3(1Q44) WILD-TYPE" "DEL PEAK  3(1Q44) WILD-TYPE" 
                 TCGA-BR-8286                  TCGA-BR-8289 
"DEL PEAK  3(1Q44) WILD-TYPE" "DEL PEAK  3(1Q44) WILD-TYPE" 
                 TCGA-BR-8291                  TCGA-BR-8295 
"DEL PEAK  3(1Q44) WILD-TYPE" "DEL PEAK  3(1Q44) WILD-TYPE" 
                 TCGA-BR-8296                  TCGA-BR-8297 
"DEL PEAK  3(1Q44) WILD-TYPE" "DEL PEAK  3(1Q44) WILD-TYPE" 
                 TCGA-CD-5798                  TCGA-CD-5799 
"DEL PEAK  3(1Q44) WILD-TYPE" "DEL PEAK  3(1Q44) WILD-TYPE" 
                 TCGA-CD-5800                  TCGA-CD-5801 
"DEL PEAK  3(1Q44) WILD-TYPE"   "DEL PEAK  3(1Q44) MUTATED" 
                 TCGA-CD-5802                  TCGA-CD-5803 
"DEL PEAK  3(1Q44) WILD-TYPE" "DEL PEAK  3(1Q44) WILD-TYPE" 
                 TCGA-CG-4300                  TCGA-CG-4301 
"DEL PEAK  3(1Q44) WILD-TYPE" "DEL PEAK  3(1Q44) WILD-TYPE" 
                 TCGA-CG-4304                  TCGA-CG-4305 
"DEL PEAK  3(1Q44) WILD-TYPE" "DEL PEAK  3(1Q44) WILD-TYPE" 
                 TCGA-CG-4306                  TCGA-CG-4436 
  "DEL PEAK  3(1Q44) MUTATED" "DEL PEAK  3(1Q44) WILD-TYPE" 
                 TCGA-CG-4437                  TCGA-CG-4438 
"DEL PEAK  3(1Q44) WILD-TYPE" "DEL PEAK  3(1Q44) WILD-TYPE" 
                 TCGA-CG-4440                  TCGA-CG-4441 
"DEL PEAK  3(1Q44) WILD-TYPE"   "DEL PEAK  3(1Q44) MUTATED" 
                 TCGA-CG-4443                  TCGA-CG-4444 
"DEL PEAK  3(1Q44) WILD-TYPE" "DEL PEAK  3(1Q44) WILD-TYPE" 
                 TCGA-CG-4449                  TCGA-CG-4455 
"DEL PEAK  3(1Q44) WILD-TYPE" "DEL PEAK  3(1Q44) WILD-TYPE" 
                 TCGA-CG-4460                  TCGA-CG-4462 
"DEL PEAK  3(1Q44) WILD-TYPE" "DEL PEAK  3(1Q44) WILD-TYPE" 
                 TCGA-CG-4465                  TCGA-CG-4466 
"DEL PEAK  3(1Q44) WILD-TYPE"   "DEL PEAK  3(1Q44) MUTATED" 
                 TCGA-CG-4469                  TCGA-CG-4472 
  "DEL PEAK  3(1Q44) MUTATED" "DEL PEAK  3(1Q44) WILD-TYPE" 
                 TCGA-CG-4474                  TCGA-CG-4477 
"DEL PEAK  3(1Q44) WILD-TYPE"   "DEL PEAK  3(1Q44) MUTATED" 
                 TCGA-CG-5716                  TCGA-CG-5717 
"DEL PEAK  3(1Q44) WILD-TYPE" "DEL PEAK  3(1Q44) WILD-TYPE" 
                 TCGA-CG-5718                  TCGA-CG-5719 
"DEL PEAK  3(1Q44) WILD-TYPE" "DEL PEAK  3(1Q44) WILD-TYPE" 
                 TCGA-CG-5720                  TCGA-CG-5721 
"DEL PEAK  3(1Q44) WILD-TYPE" "DEL PEAK  3(1Q44) WILD-TYPE" 
                 TCGA-CG-5722                  TCGA-CG-5723 
"DEL PEAK  3(1Q44) WILD-TYPE" "DEL PEAK  3(1Q44) WILD-TYPE" 
                 TCGA-CG-5724                  TCGA-CG-5725 
  "DEL PEAK  3(1Q44) MUTATED" "DEL PEAK  3(1Q44) WILD-TYPE" 
                 TCGA-CG-5726                  TCGA-CG-5727 
"DEL PEAK  3(1Q44) WILD-TYPE" "DEL PEAK  3(1Q44) WILD-TYPE" 
                 TCGA-CG-5728                  TCGA-CG-5730 
"DEL PEAK  3(1Q44) WILD-TYPE" "DEL PEAK  3(1Q44) WILD-TYPE" 
                 TCGA-CG-5732                  TCGA-CG-5733 
"DEL PEAK  3(1Q44) WILD-TYPE" "DEL PEAK  3(1Q44) WILD-TYPE" 
                 TCGA-CG-5734                  TCGA-D7-5577 
"DEL PEAK  3(1Q44) WILD-TYPE" "DEL PEAK  3(1Q44) WILD-TYPE" 
                 TCGA-D7-5578                  TCGA-D7-5579 
"DEL PEAK  3(1Q44) WILD-TYPE" "DEL PEAK  3(1Q44) WILD-TYPE" 
                 TCGA-D7-6518                  TCGA-D7-6519 
"DEL PEAK  3(1Q44) WILD-TYPE"   "DEL PEAK  3(1Q44) MUTATED" 
                 TCGA-D7-6520                  TCGA-D7-6521 
"DEL PEAK  3(1Q44) WILD-TYPE" "DEL PEAK  3(1Q44) WILD-TYPE" 
                 TCGA-D7-6522                  TCGA-D7-6524 
"DEL PEAK  3(1Q44) WILD-TYPE" "DEL PEAK  3(1Q44) WILD-TYPE" 
                 TCGA-D7-6525                  TCGA-D7-6526 
"DEL PEAK  3(1Q44) WILD-TYPE" "DEL PEAK  3(1Q44) WILD-TYPE" 
                 TCGA-D7-6527                  TCGA-D7-6528 
"DEL PEAK  3(1Q44) WILD-TYPE" "DEL PEAK  3(1Q44) WILD-TYPE" 
                 TCGA-D7-6815                  TCGA-D7-6817 
"DEL PEAK  3(1Q44) WILD-TYPE" "DEL PEAK  3(1Q44) WILD-TYPE" 
                 TCGA-D7-6818                  TCGA-D7-6820 
"DEL PEAK  3(1Q44) WILD-TYPE" "DEL PEAK  3(1Q44) WILD-TYPE" 
                 TCGA-D7-6822                  TCGA-EQ-5647 
"DEL PEAK  3(1Q44) WILD-TYPE" "DEL PEAK  3(1Q44) WILD-TYPE" 
                 TCGA-EQ-8122                  TCGA-F1-6177 
"DEL PEAK  3(1Q44) WILD-TYPE" "DEL PEAK  3(1Q44) WILD-TYPE" 
                 TCGA-F1-6874                  TCGA-F1-6875 
"DEL PEAK  3(1Q44) WILD-TYPE" "DEL PEAK  3(1Q44) WILD-TYPE" 
                 TCGA-FP-7735                  TCGA-FP-7829 
"DEL PEAK  3(1Q44) WILD-TYPE" "DEL PEAK  3(1Q44) WILD-TYPE" 
                 TCGA-FP-7916                  TCGA-FP-7998 
"DEL PEAK  3(1Q44) WILD-TYPE" "DEL PEAK  3(1Q44) WILD-TYPE" 
                 TCGA-HJ-7597                  TCGA-IN-7806 
"DEL PEAK  3(1Q44) WILD-TYPE" "DEL PEAK  3(1Q44) WILD-TYPE" 
                 TCGA-IN-7808                  TCGA-IP-7968 
"DEL PEAK  3(1Q44) WILD-TYPE"   "DEL PEAK  3(1Q44) MUTATED" 
                 TCGA-B7-5816                  TCGA-B7-5818 
"DEL PEAK  3(1Q44) WILD-TYPE" "DEL PEAK  3(1Q44) WILD-TYPE" 
                 TCGA-BR-6452                  TCGA-BR-6455 
"DEL PEAK  3(1Q44) WILD-TYPE" "DEL PEAK  3(1Q44) WILD-TYPE" 
                 TCGA-BR-6457                  TCGA-BR-6458 
"DEL PEAK  3(1Q44) WILD-TYPE" "DEL PEAK  3(1Q44) WILD-TYPE" 
                 TCGA-BR-6563                  TCGA-BR-6564 
"DEL PEAK  3(1Q44) WILD-TYPE" "DEL PEAK  3(1Q44) WILD-TYPE" 
                 TCGA-BR-6565                  TCGA-BR-6566 
"DEL PEAK  3(1Q44) WILD-TYPE" "DEL PEAK  3(1Q44) WILD-TYPE" 
                 TCGA-BR-6705                  TCGA-BR-6706 
"DEL PEAK  3(1Q44) WILD-TYPE" "DEL PEAK  3(1Q44) WILD-TYPE" 
                 TCGA-BR-6707                  TCGA-BR-6709 
"DEL PEAK  3(1Q44) WILD-TYPE" "DEL PEAK  3(1Q44) WILD-TYPE" 
                 TCGA-BR-6710                  TCGA-BR-6801 
"DEL PEAK  3(1Q44) WILD-TYPE" "DEL PEAK  3(1Q44) WILD-TYPE" 
                 TCGA-BR-6802                  TCGA-BR-6803 
"DEL PEAK  3(1Q44) WILD-TYPE" "DEL PEAK  3(1Q44) WILD-TYPE" 
                 TCGA-BR-6852                  TCGA-BR-7196 
"DEL PEAK  3(1Q44) WILD-TYPE" "DEL PEAK  3(1Q44) WILD-TYPE" 
                 TCGA-BR-7197                  TCGA-BR-7703 
"DEL PEAK  3(1Q44) WILD-TYPE" "DEL PEAK  3(1Q44) WILD-TYPE" 
                 TCGA-BR-7704                  TCGA-BR-7707 
"DEL PEAK  3(1Q44) WILD-TYPE" "DEL PEAK  3(1Q44) WILD-TYPE" 
                 TCGA-BR-7715                  TCGA-BR-7716 
"DEL PEAK  3(1Q44) WILD-TYPE" "DEL PEAK  3(1Q44) WILD-TYPE" 
                 TCGA-BR-7717                  TCGA-BR-7722 
"DEL PEAK  3(1Q44) WILD-TYPE" "DEL PEAK  3(1Q44) WILD-TYPE" 
                 TCGA-BR-7723                  TCGA-BR-7851 
"DEL PEAK  3(1Q44) WILD-TYPE" "DEL PEAK  3(1Q44) WILD-TYPE" 
                 TCGA-BR-7901                  TCGA-BR-7957 
"DEL PEAK  3(1Q44) WILD-TYPE" "DEL PEAK  3(1Q44) WILD-TYPE" 
                 TCGA-BR-7958                  TCGA-BR-7959 
"DEL PEAK  3(1Q44) WILD-TYPE" "DEL PEAK  3(1Q44) WILD-TYPE" 
                 TCGA-BR-8059                  TCGA-BR-8060 
"DEL PEAK  3(1Q44) WILD-TYPE" "DEL PEAK  3(1Q44) WILD-TYPE" 
                 TCGA-BR-8077                  TCGA-BR-8078 
"DEL PEAK  3(1Q44) WILD-TYPE" "DEL PEAK  3(1Q44) WILD-TYPE" 
                 TCGA-BR-8080                  TCGA-BR-8081 
"DEL PEAK  3(1Q44) WILD-TYPE" "DEL PEAK  3(1Q44) WILD-TYPE" 
                 TCGA-BR-8284                  TCGA-BR-8285 
"DEL PEAK  3(1Q44) WILD-TYPE" "DEL PEAK  3(1Q44) WILD-TYPE" 
                 TCGA-BR-8286                  TCGA-BR-8289 
"DEL PEAK  3(1Q44) WILD-TYPE" "DEL PEAK  3(1Q44) WILD-TYPE" 
                 TCGA-BR-8291                  TCGA-BR-8295 
"DEL PEAK  3(1Q44) WILD-TYPE" "DEL PEAK  3(1Q44) WILD-TYPE" 
                 TCGA-BR-8296                  TCGA-BR-8297 
"DEL PEAK  3(1Q44) WILD-TYPE" "DEL PEAK  3(1Q44) WILD-TYPE" 
                 TCGA-CD-5798                  TCGA-CD-5799 
"DEL PEAK  3(1Q44) WILD-TYPE" "DEL PEAK  3(1Q44) WILD-TYPE" 
                 TCGA-CD-5800                  TCGA-CD-5801 
"DEL PEAK  3(1Q44) WILD-TYPE"   "DEL PEAK  3(1Q44) MUTATED" 
                 TCGA-CD-5802                  TCGA-CD-5803 
"DEL PEAK  3(1Q44) WILD-TYPE" "DEL PEAK  3(1Q44) WILD-TYPE" 
                 TCGA-CG-4300                  TCGA-CG-4301 
"DEL PEAK  3(1Q44) WILD-TYPE" "DEL PEAK  3(1Q44) WILD-TYPE" 
                 TCGA-CG-4304                  TCGA-CG-4305 
"DEL PEAK  3(1Q44) WILD-TYPE" "DEL PEAK  3(1Q44) WILD-TYPE" 
                 TCGA-CG-4306                  TCGA-CG-4436 
  "DEL PEAK  3(1Q44) MUTATED" "DEL PEAK  3(1Q44) WILD-TYPE" 
                 TCGA-CG-4437                  TCGA-CG-4438 
"DEL PEAK  3(1Q44) WILD-TYPE" "DEL PEAK  3(1Q44) WILD-TYPE" 
                 TCGA-CG-4440                  TCGA-CG-4441 
"DEL PEAK  3(1Q44) WILD-TYPE"   "DEL PEAK  3(1Q44) MUTATED" 
                 TCGA-CG-4443                  TCGA-CG-4444 
"DEL PEAK  3(1Q44) WILD-TYPE" "DEL PEAK  3(1Q44) WILD-TYPE" 
                 TCGA-CG-4449                  TCGA-CG-4455 
"DEL PEAK  3(1Q44) WILD-TYPE" "DEL PEAK  3(1Q44) WILD-TYPE" 
                 TCGA-CG-4460                  TCGA-CG-4462 
"DEL PEAK  3(1Q44) WILD-TYPE" "DEL PEAK  3(1Q44) WILD-TYPE" 
                 TCGA-CG-4465                  TCGA-CG-4466 
"DEL PEAK  3(1Q44) WILD-TYPE"   "DEL PEAK  3(1Q44) MUTATED" 
                 TCGA-CG-4469                  TCGA-CG-4472 
  "DEL PEAK  3(1Q44) MUTATED" "DEL PEAK  3(1Q44) WILD-TYPE" 
                 TCGA-CG-4474                  TCGA-CG-4477 
"DEL PEAK  3(1Q44) WILD-TYPE"   "DEL PEAK  3(1Q44) MUTATED" 
                 TCGA-CG-5716                  TCGA-CG-5717 
"DEL PEAK  3(1Q44) WILD-TYPE" "DEL PEAK  3(1Q44) WILD-TYPE" 
                 TCGA-CG-5718                  TCGA-CG-5719 
"DEL PEAK  3(1Q44) WILD-TYPE" "DEL PEAK  3(1Q44) WILD-TYPE" 
                 TCGA-CG-5720                  TCGA-CG-5721 
"DEL PEAK  3(1Q44) WILD-TYPE" "DEL PEAK  3(1Q44) WILD-TYPE" 
                 TCGA-CG-5722                  TCGA-CG-5723 
"DEL PEAK  3(1Q44) WILD-TYPE" "DEL PEAK  3(1Q44) WILD-TYPE" 
                 TCGA-CG-5724                  TCGA-CG-5725 
  "DEL PEAK  3(1Q44) MUTATED" "DEL PEAK  3(1Q44) WILD-TYPE" 
                 TCGA-CG-5726                  TCGA-CG-5727 
"DEL PEAK  3(1Q44) WILD-TYPE" "DEL PEAK  3(1Q44) WILD-TYPE" 
                 TCGA-CG-5728                  TCGA-CG-5730 
"DEL PEAK  3(1Q44) WILD-TYPE" "DEL PEAK  3(1Q44) WILD-TYPE" 
                 TCGA-CG-5732                  TCGA-CG-5733 
"DEL PEAK  3(1Q44) WILD-TYPE" "DEL PEAK  3(1Q44) WILD-TYPE" 
                 TCGA-CG-5734                  TCGA-D7-5577 
"DEL PEAK  3(1Q44) WILD-TYPE" "DEL PEAK  3(1Q44) WILD-TYPE" 
                 TCGA-D7-5578                  TCGA-D7-5579 
"DEL PEAK  3(1Q44) WILD-TYPE" "DEL PEAK  3(1Q44) WILD-TYPE" 
                 TCGA-D7-6518                  TCGA-D7-6519 
"DEL PEAK  3(1Q44) WILD-TYPE"   "DEL PEAK  3(1Q44) MUTATED" 
                 TCGA-D7-6520                  TCGA-D7-6521 
"DEL PEAK  3(1Q44) WILD-TYPE" "DEL PEAK  3(1Q44) WILD-TYPE" 
                 TCGA-D7-6522                  TCGA-D7-6524 
"DEL PEAK  3(1Q44) WILD-TYPE" "DEL PEAK  3(1Q44) WILD-TYPE" 
                 TCGA-D7-6525                  TCGA-D7-6526 
"DEL PEAK  3(1Q44) WILD-TYPE" "DEL PEAK  3(1Q44) WILD-TYPE" 
                 TCGA-D7-6527                  TCGA-D7-6528 
"DEL PEAK  3(1Q44) WILD-TYPE" "DEL PEAK  3(1Q44) WILD-TYPE" 
                 TCGA-D7-6815                  TCGA-D7-6817 
"DEL PEAK  3(1Q44) WILD-TYPE" "DEL PEAK  3(1Q44) WILD-TYPE" 
                 TCGA-D7-6818                  TCGA-D7-6820 
"DEL PEAK  3(1Q44) WILD-TYPE" "DEL PEAK  3(1Q44) WILD-TYPE" 
                 TCGA-D7-6822                  TCGA-EQ-5647 
"DEL PEAK  3(1Q44) WILD-TYPE" "DEL PEAK  3(1Q44) WILD-TYPE" 
                 TCGA-EQ-8122                  TCGA-F1-6177 
"DEL PEAK  3(1Q44) WILD-TYPE" "DEL PEAK  3(1Q44) WILD-TYPE" 
                 TCGA-F1-6874                  TCGA-F1-6875 
"DEL PEAK  3(1Q44) WILD-TYPE" "DEL PEAK  3(1Q44) WILD-TYPE" 
                 TCGA-FP-7735                  TCGA-FP-7829 
"DEL PEAK  3(1Q44) WILD-TYPE" "DEL PEAK  3(1Q44) WILD-TYPE" 
                 TCGA-FP-7916                  TCGA-FP-7998 
"DEL PEAK  3(1Q44) WILD-TYPE" "DEL PEAK  3(1Q44) WILD-TYPE" 
                 TCGA-HJ-7597                  TCGA-IN-7806 
"DEL PEAK  3(1Q44) WILD-TYPE" "DEL PEAK  3(1Q44) WILD-TYPE" 
                 TCGA-IN-7808                  TCGA-IP-7968 
"DEL PEAK  3(1Q44) WILD-TYPE"   "DEL PEAK  3(1Q44) MUTATED" 
                 TCGA-B7-5816                  TCGA-B7-5818 
"DEL PEAK  3(1Q44) WILD-TYPE" "DEL PEAK  3(1Q44) WILD-TYPE" 
                 TCGA-BR-6452                  TCGA-BR-6455 
"DEL PEAK  3(1Q44) WILD-TYPE" "DEL PEAK  3(1Q44) WILD-TYPE" 
                 TCGA-BR-6457                  TCGA-BR-6458 
"DEL PEAK  3(1Q44) WILD-TYPE" "DEL PEAK  3(1Q44) WILD-TYPE" 
                 TCGA-BR-6563                  TCGA-BR-6564 
"DEL PEAK  3(1Q44) WILD-TYPE" "DEL PEAK  3(1Q44) WILD-TYPE" 
                 TCGA-BR-6565                  TCGA-BR-6566 
"DEL PEAK  3(1Q44) WILD-TYPE" "DEL PEAK  3(1Q44) WILD-TYPE" 
                 TCGA-BR-6705                  TCGA-BR-6706 
"DEL PEAK  3(1Q44) WILD-TYPE" "DEL PEAK  3(1Q44) WILD-TYPE" 
                 TCGA-BR-6707                  TCGA-BR-6709 
"DEL PEAK  3(1Q44) WILD-TYPE" "DEL PEAK  3(1Q44) WILD-TYPE" 
                 TCGA-BR-6710                  TCGA-BR-6801 
"DEL PEAK  3(1Q44) WILD-TYPE" "DEL PEAK  3(1Q44) WILD-TYPE" 
                 TCGA-BR-6802                  TCGA-BR-6803 
"DEL PEAK  3(1Q44) WILD-TYPE" "DEL PEAK  3(1Q44) WILD-TYPE" 
                 TCGA-BR-6852                  TCGA-BR-7196 
"DEL PEAK  3(1Q44) WILD-TYPE" "DEL PEAK  3(1Q44) WILD-TYPE" 
                 TCGA-BR-7197                  TCGA-BR-7703 
"DEL PEAK  3(1Q44) WILD-TYPE" "DEL PEAK  3(1Q44) WILD-TYPE" 
                 TCGA-BR-7704                  TCGA-BR-7707 
"DEL PEAK  3(1Q44) WILD-TYPE" "DEL PEAK  3(1Q44) WILD-TYPE" 
                 TCGA-BR-7715                  TCGA-BR-7716 
"DEL PEAK  3(1Q44) WILD-TYPE" "DEL PEAK  3(1Q44) WILD-TYPE" 
                 TCGA-BR-7717                  TCGA-BR-7722 
"DEL PEAK  3(1Q44) WILD-TYPE" "DEL PEAK  3(1Q44) WILD-TYPE" 
                 TCGA-BR-7723                  TCGA-BR-7851 
"DEL PEAK  3(1Q44) WILD-TYPE" "DEL PEAK  3(1Q44) WILD-TYPE" 
                 TCGA-BR-7901                  TCGA-BR-7957 
"DEL PEAK  3(1Q44) WILD-TYPE" "DEL PEAK  3(1Q44) WILD-TYPE" 
                 TCGA-BR-7958                  TCGA-BR-7959 
"DEL PEAK  3(1Q44) WILD-TYPE" "DEL PEAK  3(1Q44) WILD-TYPE" 
                 TCGA-BR-8059                  TCGA-BR-8060 
"DEL PEAK  3(1Q44) WILD-TYPE" "DEL PEAK  3(1Q44) WILD-TYPE" 
                 TCGA-BR-8077                  TCGA-BR-8078 
"DEL PEAK  3(1Q44) WILD-TYPE" "DEL PEAK  3(1Q44) WILD-TYPE" 
                 TCGA-BR-8080                  TCGA-BR-8081 
"DEL PEAK  3(1Q44) WILD-TYPE" "DEL PEAK  3(1Q44) WILD-TYPE" 
                 TCGA-BR-8284                  TCGA-BR-8285 
"DEL PEAK  3(1Q44) WILD-TYPE" "DEL PEAK  3(1Q44) WILD-TYPE" 
                 TCGA-BR-8286                  TCGA-BR-8289 
"DEL PEAK  3(1Q44) WILD-TYPE" "DEL PEAK  3(1Q44) WILD-TYPE" 
                 TCGA-BR-8291                  TCGA-BR-8295 
"DEL PEAK  3(1Q44) WILD-TYPE" "DEL PEAK  3(1Q44) WILD-TYPE" 
                 TCGA-BR-8296                  TCGA-BR-8297 
"DEL PEAK  3(1Q44) WILD-TYPE" "DEL PEAK  3(1Q44) WILD-TYPE" 
                 TCGA-CD-5798                  TCGA-CD-5799 
"DEL PEAK  3(1Q44) WILD-TYPE" "DEL PEAK  3(1Q44) WILD-TYPE" 
                 TCGA-CD-5800                  TCGA-CD-5801 
"DEL PEAK  3(1Q44) WILD-TYPE"   "DEL PEAK  3(1Q44) MUTATED" 
                 TCGA-CD-5802                  TCGA-CD-5803 
"DEL PEAK  3(1Q44) WILD-TYPE" "DEL PEAK  3(1Q44) WILD-TYPE" 
                 TCGA-CG-4300                  TCGA-CG-4301 
"DEL PEAK  3(1Q44) WILD-TYPE" "DEL PEAK  3(1Q44) WILD-TYPE" 
                 TCGA-CG-4304                  TCGA-CG-4305 
"DEL PEAK  3(1Q44) WILD-TYPE" "DEL PEAK  3(1Q44) WILD-TYPE" 
                 TCGA-CG-4306                  TCGA-CG-4436 
  "DEL PEAK  3(1Q44) MUTATED" "DEL PEAK  3(1Q44) WILD-TYPE" 
                 TCGA-CG-4437                  TCGA-CG-4438 
"DEL PEAK  3(1Q44) WILD-TYPE" "DEL PEAK  3(1Q44) WILD-TYPE" 
                 TCGA-CG-4440                  TCGA-CG-4441 
"DEL PEAK  3(1Q44) WILD-TYPE"   "DEL PEAK  3(1Q44) MUTATED" 
                 TCGA-CG-4443                  TCGA-CG-4444 
"DEL PEAK  3(1Q44) WILD-TYPE" "DEL PEAK  3(1Q44) WILD-TYPE" 
                 TCGA-CG-4449                  TCGA-CG-4455 
"DEL PEAK  3(1Q44) WILD-TYPE" "DEL PEAK  3(1Q44) WILD-TYPE" 
                 TCGA-CG-4460                  TCGA-CG-4462 
"DEL PEAK  3(1Q44) WILD-TYPE" "DEL PEAK  3(1Q44) WILD-TYPE" 
                 TCGA-CG-4465                  TCGA-CG-4466 
"DEL PEAK  3(1Q44) WILD-TYPE"   "DEL PEAK  3(1Q44) MUTATED" 
                 TCGA-CG-4469                  TCGA-CG-4472 
  "DEL PEAK  3(1Q44) MUTATED" "DEL PEAK  3(1Q44) WILD-TYPE" 
                 TCGA-CG-4474                  TCGA-CG-4477 
"DEL PEAK  3(1Q44) WILD-TYPE"   "DEL PEAK  3(1Q44) MUTATED" 
                 TCGA-CG-5716                  TCGA-CG-5717 
"DEL PEAK  3(1Q44) WILD-TYPE" "DEL PEAK  3(1Q44) WILD-TYPE" 
                 TCGA-CG-5718                  TCGA-CG-5719 
"DEL PEAK  3(1Q44) WILD-TYPE" "DEL PEAK  3(1Q44) WILD-TYPE" 
                 TCGA-CG-5720                  TCGA-CG-5721 
"DEL PEAK  3(1Q44) WILD-TYPE" "DEL PEAK  3(1Q44) WILD-TYPE" 
                 TCGA-CG-5722                  TCGA-CG-5723 
"DEL PEAK  3(1Q44) WILD-TYPE" "DEL PEAK  3(1Q44) WILD-TYPE" 
                 TCGA-CG-5724                  TCGA-CG-5725 
  "DEL PEAK  3(1Q44) MUTATED" "DEL PEAK  3(1Q44) WILD-TYPE" 
                 TCGA-CG-5726                  TCGA-CG-5727 
"DEL PEAK  3(1Q44) WILD-TYPE" "DEL PEAK  3(1Q44) WILD-TYPE" 
                 TCGA-CG-5728                  TCGA-CG-5730 
"DEL PEAK  3(1Q44) WILD-TYPE" "DEL PEAK  3(1Q44) WILD-TYPE" 
                 TCGA-CG-5732                  TCGA-CG-5733 
"DEL PEAK  3(1Q44) WILD-TYPE" "DEL PEAK  3(1Q44) WILD-TYPE" 
                 TCGA-CG-5734                  TCGA-D7-5577 
"DEL PEAK  3(1Q44) WILD-TYPE" "DEL PEAK  3(1Q44) WILD-TYPE" 
                 TCGA-D7-5578                  TCGA-D7-5579 
"DEL PEAK  3(1Q44) WILD-TYPE" "DEL PEAK  3(1Q44) WILD-TYPE" 
                 TCGA-D7-6518                  TCGA-D7-6519 
"DEL PEAK  3(1Q44) WILD-TYPE"   "DEL PEAK  3(1Q44) MUTATED" 
                 TCGA-D7-6520                  TCGA-D7-6521 
"DEL PEAK  3(1Q44) WILD-TYPE" "DEL PEAK  3(1Q44) WILD-TYPE" 
                 TCGA-D7-6522                  TCGA-D7-6524 
"DEL PEAK  3(1Q44) WILD-TYPE" "DEL PEAK  3(1Q44) WILD-TYPE" 
                 TCGA-D7-6525                  TCGA-D7-6526 
"DEL PEAK  3(1Q44) WILD-TYPE" "DEL PEAK  3(1Q44) WILD-TYPE" 
                 TCGA-D7-6527                  TCGA-D7-6528 
"DEL PEAK  3(1Q44) WILD-TYPE" "DEL PEAK  3(1Q44) WILD-TYPE" 
                 TCGA-D7-6815                  TCGA-D7-6817 
"DEL PEAK  3(1Q44) WILD-TYPE" "DEL PEAK  3(1Q44) WILD-TYPE" 
                 TCGA-D7-6818                  TCGA-D7-6820 
"DEL PEAK  3(1Q44) WILD-TYPE" "DEL PEAK  3(1Q44) WILD-TYPE" 
                 TCGA-D7-6822                  TCGA-EQ-5647 
"DEL PEAK  3(1Q44) WILD-TYPE" "DEL PEAK  3(1Q44) WILD-TYPE" 
                 TCGA-EQ-8122                  TCGA-F1-6177 
"DEL PEAK  3(1Q44) WILD-TYPE" "DEL PEAK  3(1Q44) WILD-TYPE" 
                 TCGA-F1-6874                  TCGA-F1-6875 
"DEL PEAK  3(1Q44) WILD-TYPE" "DEL PEAK  3(1Q44) WILD-TYPE" 
                 TCGA-FP-7735                  TCGA-FP-7829 
"DEL PEAK  3(1Q44) WILD-TYPE" "DEL PEAK  3(1Q44) WILD-TYPE" 
                 TCGA-FP-7916                  TCGA-FP-7998 
"DEL PEAK  3(1Q44) WILD-TYPE" "DEL PEAK  3(1Q44) WILD-TYPE" 
                 TCGA-HJ-7597                  TCGA-IN-7806 
"DEL PEAK  3(1Q44) WILD-TYPE" "DEL PEAK  3(1Q44) WILD-TYPE" 
                 TCGA-IN-7808                  TCGA-IP-7968 
"DEL PEAK  3(1Q44) WILD-TYPE"   "DEL PEAK  3(1Q44) MUTATED" 
[1] "hr=" "4.1"
D29V2, continuous
D29V3, binary
[1] "tbl2"
                             cls
clus                          [,1] [,2]
  DEL PEAK  3(1Q44) MUTATED      4    8
  DEL PEAK  3(1Q44) WILD-TYPE   61   88
        clus
vv       DEL PEAK  3(1Q44) MUTATED DEL PEAK  3(1Q44) WILD-TYPE
  FEMALE                         4                          61
  MALE                           8                          88
D29V4, multiclass
D29V5, multiclass
    clus
vv   DEL PEAK  3(1Q44) MUTATED DEL PEAK  3(1Q44) WILD-TYPE
  T1                         0                           6
  T2                         4                          49
  T3                         7                          52
  T4                         0                          33
D29V6, multiclass
    clus
vv   DEL PEAK  3(1Q44) MUTATED DEL PEAK  3(1Q44) WILD-TYPE
  N0                         2                          48
  N1                         4                          53
  N2                         3                          21
  N3                         2                          17
D29V7, multiclass
    clus
vv   DEL PEAK  3(1Q44) MUTATED DEL PEAK  3(1Q44) WILD-TYPE
  M0                         9                         123
  M1                         2                          16
  MX                         1                          10
D29V8, multiclass
     clus
vv    DEL PEAK  3(1Q44) MUTATED DEL PEAK  3(1Q44) WILD-TYPE
  I                           2                          23
  II                          2                          41
  III                         4                          44
  IV                          3                          26
D29V9, binary
[1] "tbl2"
                             cls
clus                          [,1] [,2]
  DEL PEAK  3(1Q44) MUTATED     12    0
  DEL PEAK  3(1Q44) WILD-TYPE  144    5
     clus
vv    DEL PEAK  3(1Q44) MUTATED DEL PEAK  3(1Q44) WILD-TYPE
  NO                          0                           5
  YES                        12                         144

Clustering(30) Variable = Del Peak  4(2q32.1) mutation analysis
D30V1, survival
                   TCGA-B7-5816                    TCGA-B7-5818 
"DEL PEAK  4(2Q32.1) WILD-TYPE" "DEL PEAK  4(2Q32.1) WILD-TYPE" 
                   TCGA-BR-6452                    TCGA-BR-6455 
"DEL PEAK  4(2Q32.1) WILD-TYPE" "DEL PEAK  4(2Q32.1) WILD-TYPE" 
                   TCGA-BR-6457                    TCGA-BR-6458 
"DEL PEAK  4(2Q32.1) WILD-TYPE"   "DEL PEAK  4(2Q32.1) MUTATED" 
                   TCGA-BR-6563                    TCGA-BR-6564 
"DEL PEAK  4(2Q32.1) WILD-TYPE" "DEL PEAK  4(2Q32.1) WILD-TYPE" 
                   TCGA-BR-6565                    TCGA-BR-6566 
  "DEL PEAK  4(2Q32.1) MUTATED" "DEL PEAK  4(2Q32.1) WILD-TYPE" 
                   TCGA-BR-6705                    TCGA-BR-6706 
"DEL PEAK  4(2Q32.1) WILD-TYPE" "DEL PEAK  4(2Q32.1) WILD-TYPE" 
                   TCGA-BR-6707                    TCGA-BR-6709 
"DEL PEAK  4(2Q32.1) WILD-TYPE" "DEL PEAK  4(2Q32.1) WILD-TYPE" 
                   TCGA-BR-6710                    TCGA-BR-6801 
"DEL PEAK  4(2Q32.1) WILD-TYPE" "DEL PEAK  4(2Q32.1) WILD-TYPE" 
                   TCGA-BR-6802                    TCGA-BR-6803 
"DEL PEAK  4(2Q32.1) WILD-TYPE" "DEL PEAK  4(2Q32.1) WILD-TYPE" 
                   TCGA-BR-6852                    TCGA-BR-7196 
"DEL PEAK  4(2Q32.1) WILD-TYPE" "DEL PEAK  4(2Q32.1) WILD-TYPE" 
                   TCGA-BR-7197                    TCGA-BR-7703 
"DEL PEAK  4(2Q32.1) WILD-TYPE" "DEL PEAK  4(2Q32.1) WILD-TYPE" 
                   TCGA-BR-7704                    TCGA-BR-7707 
"DEL PEAK  4(2Q32.1) WILD-TYPE" "DEL PEAK  4(2Q32.1) WILD-TYPE" 
                   TCGA-BR-7715                    TCGA-BR-7716 
"DEL PEAK  4(2Q32.1) WILD-TYPE" "DEL PEAK  4(2Q32.1) WILD-TYPE" 
                   TCGA-BR-7717                    TCGA-BR-7722 
"DEL PEAK  4(2Q32.1) WILD-TYPE" "DEL PEAK  4(2Q32.1) WILD-TYPE" 
                   TCGA-BR-7723                    TCGA-BR-7851 
"DEL PEAK  4(2Q32.1) WILD-TYPE" "DEL PEAK  4(2Q32.1) WILD-TYPE" 
                   TCGA-BR-7901                    TCGA-BR-7957 
"DEL PEAK  4(2Q32.1) WILD-TYPE" "DEL PEAK  4(2Q32.1) WILD-TYPE" 
                   TCGA-BR-7958                    TCGA-BR-7959 
"DEL PEAK  4(2Q32.1) WILD-TYPE" "DEL PEAK  4(2Q32.1) WILD-TYPE" 
                   TCGA-BR-8059                    TCGA-BR-8060 
"DEL PEAK  4(2Q32.1) WILD-TYPE" "DEL PEAK  4(2Q32.1) WILD-TYPE" 
                   TCGA-BR-8077                    TCGA-BR-8078 
"DEL PEAK  4(2Q32.1) WILD-TYPE" "DEL PEAK  4(2Q32.1) WILD-TYPE" 
                   TCGA-BR-8080                    TCGA-BR-8081 
"DEL PEAK  4(2Q32.1) WILD-TYPE" "DEL PEAK  4(2Q32.1) WILD-TYPE" 
                   TCGA-BR-8284                    TCGA-BR-8285 
"DEL PEAK  4(2Q32.1) WILD-TYPE" "DEL PEAK  4(2Q32.1) WILD-TYPE" 
                   TCGA-BR-8286                    TCGA-BR-8289 
"DEL PEAK  4(2Q32.1) WILD-TYPE" "DEL PEAK  4(2Q32.1) WILD-TYPE" 
                   TCGA-BR-8291                    TCGA-BR-8295 
"DEL PEAK  4(2Q32.1) WILD-TYPE" "DEL PEAK  4(2Q32.1) WILD-TYPE" 
                   TCGA-BR-8296                    TCGA-BR-8297 
"DEL PEAK  4(2Q32.1) WILD-TYPE" "DEL PEAK  4(2Q32.1) WILD-TYPE" 
                   TCGA-CD-5798                    TCGA-CD-5799 
"DEL PEAK  4(2Q32.1) WILD-TYPE" "DEL PEAK  4(2Q32.1) WILD-TYPE" 
                   TCGA-CD-5800                    TCGA-CD-5801 
"DEL PEAK  4(2Q32.1) WILD-TYPE" "DEL PEAK  4(2Q32.1) WILD-TYPE" 
                   TCGA-CD-5802                    TCGA-CD-5803 
"DEL PEAK  4(2Q32.1) WILD-TYPE" "DEL PEAK  4(2Q32.1) WILD-TYPE" 
                   TCGA-CG-4300                    TCGA-CG-4301 
  "DEL PEAK  4(2Q32.1) MUTATED" "DEL PEAK  4(2Q32.1) WILD-TYPE" 
                   TCGA-CG-4304                    TCGA-CG-4305 
"DEL PEAK  4(2Q32.1) WILD-TYPE" "DEL PEAK  4(2Q32.1) WILD-TYPE" 
                   TCGA-CG-4306                    TCGA-CG-4436 
"DEL PEAK  4(2Q32.1) WILD-TYPE" "DEL PEAK  4(2Q32.1) WILD-TYPE" 
                   TCGA-CG-4437                    TCGA-CG-4438 
"DEL PEAK  4(2Q32.1) WILD-TYPE" "DEL PEAK  4(2Q32.1) WILD-TYPE" 
                   TCGA-CG-4440                    TCGA-CG-4441 
"DEL PEAK  4(2Q32.1) WILD-TYPE" "DEL PEAK  4(2Q32.1) WILD-TYPE" 
                   TCGA-CG-4443                    TCGA-CG-4444 
"DEL PEAK  4(2Q32.1) WILD-TYPE"   "DEL PEAK  4(2Q32.1) MUTATED" 
                   TCGA-CG-4449                    TCGA-CG-4455 
"DEL PEAK  4(2Q32.1) WILD-TYPE" "DEL PEAK  4(2Q32.1) WILD-TYPE" 
                   TCGA-CG-4460                    TCGA-CG-4462 
"DEL PEAK  4(2Q32.1) WILD-TYPE"   "DEL PEAK  4(2Q32.1) MUTATED" 
                   TCGA-CG-4465                    TCGA-CG-4466 
"DEL PEAK  4(2Q32.1) WILD-TYPE" "DEL PEAK  4(2Q32.1) WILD-TYPE" 
                   TCGA-CG-4469                    TCGA-CG-4472 
"DEL PEAK  4(2Q32.1) WILD-TYPE"   "DEL PEAK  4(2Q32.1) MUTATED" 
                   TCGA-CG-4474                    TCGA-CG-4477 
"DEL PEAK  4(2Q32.1) WILD-TYPE" "DEL PEAK  4(2Q32.1) WILD-TYPE" 
                   TCGA-CG-5716                    TCGA-CG-5717 
"DEL PEAK  4(2Q32.1) WILD-TYPE" "DEL PEAK  4(2Q32.1) WILD-TYPE" 
                   TCGA-CG-5718                    TCGA-CG-5719 
"DEL PEAK  4(2Q32.1) WILD-TYPE" "DEL PEAK  4(2Q32.1) WILD-TYPE" 
                   TCGA-CG-5720                    TCGA-CG-5721 
  "DEL PEAK  4(2Q32.1) MUTATED" "DEL PEAK  4(2Q32.1) WILD-TYPE" 
                   TCGA-CG-5722                    TCGA-CG-5723 
"DEL PEAK  4(2Q32.1) WILD-TYPE" "DEL PEAK  4(2Q32.1) WILD-TYPE" 
                   TCGA-CG-5724                    TCGA-CG-5725 
  "DEL PEAK  4(2Q32.1) MUTATED"   "DEL PEAK  4(2Q32.1) MUTATED" 
                   TCGA-CG-5726                    TCGA-CG-5727 
"DEL PEAK  4(2Q32.1) WILD-TYPE" "DEL PEAK  4(2Q32.1) WILD-TYPE" 
                   TCGA-CG-5728                    TCGA-CG-5730 
"DEL PEAK  4(2Q32.1) WILD-TYPE" "DEL PEAK  4(2Q32.1) WILD-TYPE" 
                   TCGA-CG-5732                    TCGA-CG-5733 
"DEL PEAK  4(2Q32.1) WILD-TYPE" "DEL PEAK  4(2Q32.1) WILD-TYPE" 
                   TCGA-CG-5734                    TCGA-D7-5577 
"DEL PEAK  4(2Q32.1) WILD-TYPE" "DEL PEAK  4(2Q32.1) WILD-TYPE" 
                   TCGA-D7-5578                    TCGA-D7-5579 
  "DEL PEAK  4(2Q32.1) MUTATED"   "DEL PEAK  4(2Q32.1) MUTATED" 
                   TCGA-D7-6518                    TCGA-D7-6519 
"DEL PEAK  4(2Q32.1) WILD-TYPE" "DEL PEAK  4(2Q32.1) WILD-TYPE" 
                   TCGA-D7-6520                    TCGA-D7-6521 
"DEL PEAK  4(2Q32.1) WILD-TYPE" "DEL PEAK  4(2Q32.1) WILD-TYPE" 
                   TCGA-D7-6522                    TCGA-D7-6524 
"DEL PEAK  4(2Q32.1) WILD-TYPE" "DEL PEAK  4(2Q32.1) WILD-TYPE" 
                   TCGA-D7-6525                    TCGA-D7-6526 
"DEL PEAK  4(2Q32.1) WILD-TYPE" "DEL PEAK  4(2Q32.1) WILD-TYPE" 
                   TCGA-D7-6527                    TCGA-D7-6528 
"DEL PEAK  4(2Q32.1) WILD-TYPE" "DEL PEAK  4(2Q32.1) WILD-TYPE" 
                   TCGA-D7-6815                    TCGA-D7-6817 
"DEL PEAK  4(2Q32.1) WILD-TYPE" "DEL PEAK  4(2Q32.1) WILD-TYPE" 
                   TCGA-D7-6818                    TCGA-D7-6820 
"DEL PEAK  4(2Q32.1) WILD-TYPE" "DEL PEAK  4(2Q32.1) WILD-TYPE" 
                   TCGA-D7-6822                    TCGA-EQ-5647 
"DEL PEAK  4(2Q32.1) WILD-TYPE" "DEL PEAK  4(2Q32.1) WILD-TYPE" 
                   TCGA-EQ-8122                    TCGA-F1-6177 
  "DEL PEAK  4(2Q32.1) MUTATED" "DEL PEAK  4(2Q32.1) WILD-TYPE" 
                   TCGA-F1-6874                    TCGA-F1-6875 
"DEL PEAK  4(2Q32.1) WILD-TYPE" "DEL PEAK  4(2Q32.1) WILD-TYPE" 
                   TCGA-FP-7735                    TCGA-FP-7829 
"DEL PEAK  4(2Q32.1) WILD-TYPE" "DEL PEAK  4(2Q32.1) WILD-TYPE" 
                   TCGA-FP-7916                    TCGA-FP-7998 
"DEL PEAK  4(2Q32.1) WILD-TYPE" "DEL PEAK  4(2Q32.1) WILD-TYPE" 
                   TCGA-HJ-7597                    TCGA-IN-7806 
  "DEL PEAK  4(2Q32.1) MUTATED" "DEL PEAK  4(2Q32.1) WILD-TYPE" 
                   TCGA-IN-7808                    TCGA-IP-7968 
"DEL PEAK  4(2Q32.1) WILD-TYPE" "DEL PEAK  4(2Q32.1) WILD-TYPE" 
                   TCGA-B7-5816                    TCGA-B7-5818 
"DEL PEAK  4(2Q32.1) WILD-TYPE" "DEL PEAK  4(2Q32.1) WILD-TYPE" 
                   TCGA-BR-6452                    TCGA-BR-6455 
"DEL PEAK  4(2Q32.1) WILD-TYPE" "DEL PEAK  4(2Q32.1) WILD-TYPE" 
                   TCGA-BR-6457                    TCGA-BR-6458 
"DEL PEAK  4(2Q32.1) WILD-TYPE"   "DEL PEAK  4(2Q32.1) MUTATED" 
                   TCGA-BR-6563                    TCGA-BR-6564 
"DEL PEAK  4(2Q32.1) WILD-TYPE" "DEL PEAK  4(2Q32.1) WILD-TYPE" 
                   TCGA-BR-6565                    TCGA-BR-6566 
  "DEL PEAK  4(2Q32.1) MUTATED" "DEL PEAK  4(2Q32.1) WILD-TYPE" 
                   TCGA-BR-6705                    TCGA-BR-6706 
"DEL PEAK  4(2Q32.1) WILD-TYPE" "DEL PEAK  4(2Q32.1) WILD-TYPE" 
                   TCGA-BR-6707                    TCGA-BR-6709 
"DEL PEAK  4(2Q32.1) WILD-TYPE" "DEL PEAK  4(2Q32.1) WILD-TYPE" 
                   TCGA-BR-6710                    TCGA-BR-6801 
"DEL PEAK  4(2Q32.1) WILD-TYPE" "DEL PEAK  4(2Q32.1) WILD-TYPE" 
                   TCGA-BR-6802                    TCGA-BR-6803 
"DEL PEAK  4(2Q32.1) WILD-TYPE" "DEL PEAK  4(2Q32.1) WILD-TYPE" 
                   TCGA-BR-6852                    TCGA-BR-7196 
"DEL PEAK  4(2Q32.1) WILD-TYPE" "DEL PEAK  4(2Q32.1) WILD-TYPE" 
                   TCGA-BR-7197                    TCGA-BR-7703 
"DEL PEAK  4(2Q32.1) WILD-TYPE" "DEL PEAK  4(2Q32.1) WILD-TYPE" 
                   TCGA-BR-7704                    TCGA-BR-7707 
"DEL PEAK  4(2Q32.1) WILD-TYPE" "DEL PEAK  4(2Q32.1) WILD-TYPE" 
                   TCGA-BR-7715                    TCGA-BR-7716 
"DEL PEAK  4(2Q32.1) WILD-TYPE" "DEL PEAK  4(2Q32.1) WILD-TYPE" 
                   TCGA-BR-7717                    TCGA-BR-7722 
"DEL PEAK  4(2Q32.1) WILD-TYPE" "DEL PEAK  4(2Q32.1) WILD-TYPE" 
                   TCGA-BR-7723                    TCGA-BR-7851 
"DEL PEAK  4(2Q32.1) WILD-TYPE" "DEL PEAK  4(2Q32.1) WILD-TYPE" 
                   TCGA-BR-7901                    TCGA-BR-7957 
"DEL PEAK  4(2Q32.1) WILD-TYPE" "DEL PEAK  4(2Q32.1) WILD-TYPE" 
                   TCGA-BR-7958                    TCGA-BR-7959 
"DEL PEAK  4(2Q32.1) WILD-TYPE" "DEL PEAK  4(2Q32.1) WILD-TYPE" 
                   TCGA-BR-8059                    TCGA-BR-8060 
"DEL PEAK  4(2Q32.1) WILD-TYPE" "DEL PEAK  4(2Q32.1) WILD-TYPE" 
                   TCGA-BR-8077                    TCGA-BR-8078 
"DEL PEAK  4(2Q32.1) WILD-TYPE" "DEL PEAK  4(2Q32.1) WILD-TYPE" 
                   TCGA-BR-8080                    TCGA-BR-8081 
"DEL PEAK  4(2Q32.1) WILD-TYPE" "DEL PEAK  4(2Q32.1) WILD-TYPE" 
                   TCGA-BR-8284                    TCGA-BR-8285 
"DEL PEAK  4(2Q32.1) WILD-TYPE" "DEL PEAK  4(2Q32.1) WILD-TYPE" 
                   TCGA-BR-8286                    TCGA-BR-8289 
"DEL PEAK  4(2Q32.1) WILD-TYPE" "DEL PEAK  4(2Q32.1) WILD-TYPE" 
                   TCGA-BR-8291                    TCGA-BR-8295 
"DEL PEAK  4(2Q32.1) WILD-TYPE" "DEL PEAK  4(2Q32.1) WILD-TYPE" 
                   TCGA-BR-8296                    TCGA-BR-8297 
"DEL PEAK  4(2Q32.1) WILD-TYPE" "DEL PEAK  4(2Q32.1) WILD-TYPE" 
                   TCGA-CD-5798                    TCGA-CD-5799 
"DEL PEAK  4(2Q32.1) WILD-TYPE" "DEL PEAK  4(2Q32.1) WILD-TYPE" 
                   TCGA-CD-5800                    TCGA-CD-5801 
"DEL PEAK  4(2Q32.1) WILD-TYPE" "DEL PEAK  4(2Q32.1) WILD-TYPE" 
                   TCGA-CD-5802                    TCGA-CD-5803 
"DEL PEAK  4(2Q32.1) WILD-TYPE" "DEL PEAK  4(2Q32.1) WILD-TYPE" 
                   TCGA-CG-4300                    TCGA-CG-4301 
  "DEL PEAK  4(2Q32.1) MUTATED" "DEL PEAK  4(2Q32.1) WILD-TYPE" 
                   TCGA-CG-4304                    TCGA-CG-4305 
"DEL PEAK  4(2Q32.1) WILD-TYPE" "DEL PEAK  4(2Q32.1) WILD-TYPE" 
                   TCGA-CG-4306                    TCGA-CG-4436 
"DEL PEAK  4(2Q32.1) WILD-TYPE" "DEL PEAK  4(2Q32.1) WILD-TYPE" 
                   TCGA-CG-4437                    TCGA-CG-4438 
"DEL PEAK  4(2Q32.1) WILD-TYPE" "DEL PEAK  4(2Q32.1) WILD-TYPE" 
                   TCGA-CG-4440                    TCGA-CG-4441 
"DEL PEAK  4(2Q32.1) WILD-TYPE" "DEL PEAK  4(2Q32.1) WILD-TYPE" 
                   TCGA-CG-4443                    TCGA-CG-4444 
"DEL PEAK  4(2Q32.1) WILD-TYPE"   "DEL PEAK  4(2Q32.1) MUTATED" 
                   TCGA-CG-4449                    TCGA-CG-4455 
"DEL PEAK  4(2Q32.1) WILD-TYPE" "DEL PEAK  4(2Q32.1) WILD-TYPE" 
                   TCGA-CG-4460                    TCGA-CG-4462 
"DEL PEAK  4(2Q32.1) WILD-TYPE"   "DEL PEAK  4(2Q32.1) MUTATED" 
                   TCGA-CG-4465                    TCGA-CG-4466 
"DEL PEAK  4(2Q32.1) WILD-TYPE" "DEL PEAK  4(2Q32.1) WILD-TYPE" 
                   TCGA-CG-4469                    TCGA-CG-4472 
"DEL PEAK  4(2Q32.1) WILD-TYPE"   "DEL PEAK  4(2Q32.1) MUTATED" 
                   TCGA-CG-4474                    TCGA-CG-4477 
"DEL PEAK  4(2Q32.1) WILD-TYPE" "DEL PEAK  4(2Q32.1) WILD-TYPE" 
                   TCGA-CG-5716                    TCGA-CG-5717 
"DEL PEAK  4(2Q32.1) WILD-TYPE" "DEL PEAK  4(2Q32.1) WILD-TYPE" 
                   TCGA-CG-5718                    TCGA-CG-5719 
"DEL PEAK  4(2Q32.1) WILD-TYPE" "DEL PEAK  4(2Q32.1) WILD-TYPE" 
                   TCGA-CG-5720                    TCGA-CG-5721 
  "DEL PEAK  4(2Q32.1) MUTATED" "DEL PEAK  4(2Q32.1) WILD-TYPE" 
                   TCGA-CG-5722                    TCGA-CG-5723 
"DEL PEAK  4(2Q32.1) WILD-TYPE" "DEL PEAK  4(2Q32.1) WILD-TYPE" 
                   TCGA-CG-5724                    TCGA-CG-5725 
  "DEL PEAK  4(2Q32.1) MUTATED"   "DEL PEAK  4(2Q32.1) MUTATED" 
                   TCGA-CG-5726                    TCGA-CG-5727 
"DEL PEAK  4(2Q32.1) WILD-TYPE" "DEL PEAK  4(2Q32.1) WILD-TYPE" 
                   TCGA-CG-5728                    TCGA-CG-5730 
"DEL PEAK  4(2Q32.1) WILD-TYPE" "DEL PEAK  4(2Q32.1) WILD-TYPE" 
                   TCGA-CG-5732                    TCGA-CG-5733 
"DEL PEAK  4(2Q32.1) WILD-TYPE" "DEL PEAK  4(2Q32.1) WILD-TYPE" 
                   TCGA-CG-5734                    TCGA-D7-5577 
"DEL PEAK  4(2Q32.1) WILD-TYPE" "DEL PEAK  4(2Q32.1) WILD-TYPE" 
                   TCGA-D7-5578                    TCGA-D7-5579 
  "DEL PEAK  4(2Q32.1) MUTATED"   "DEL PEAK  4(2Q32.1) MUTATED" 
                   TCGA-D7-6518                    TCGA-D7-6519 
"DEL PEAK  4(2Q32.1) WILD-TYPE" "DEL PEAK  4(2Q32.1) WILD-TYPE" 
                   TCGA-D7-6520                    TCGA-D7-6521 
"DEL PEAK  4(2Q32.1) WILD-TYPE" "DEL PEAK  4(2Q32.1) WILD-TYPE" 
                   TCGA-D7-6522                    TCGA-D7-6524 
"DEL PEAK  4(2Q32.1) WILD-TYPE" "DEL PEAK  4(2Q32.1) WILD-TYPE" 
                   TCGA-D7-6525                    TCGA-D7-6526 
"DEL PEAK  4(2Q32.1) WILD-TYPE" "DEL PEAK  4(2Q32.1) WILD-TYPE" 
                   TCGA-D7-6527                    TCGA-D7-6528 
"DEL PEAK  4(2Q32.1) WILD-TYPE" "DEL PEAK  4(2Q32.1) WILD-TYPE" 
                   TCGA-D7-6815                    TCGA-D7-6817 
"DEL PEAK  4(2Q32.1) WILD-TYPE" "DEL PEAK  4(2Q32.1) WILD-TYPE" 
                   TCGA-D7-6818                    TCGA-D7-6820 
"DEL PEAK  4(2Q32.1) WILD-TYPE" "DEL PEAK  4(2Q32.1) WILD-TYPE" 
                   TCGA-D7-6822                    TCGA-EQ-5647 
"DEL PEAK  4(2Q32.1) WILD-TYPE" "DEL PEAK  4(2Q32.1) WILD-TYPE" 
                   TCGA-EQ-8122                    TCGA-F1-6177 
  "DEL PEAK  4(2Q32.1) MUTATED" "DEL PEAK  4(2Q32.1) WILD-TYPE" 
                   TCGA-F1-6874                    TCGA-F1-6875 
"DEL PEAK  4(2Q32.1) WILD-TYPE" "DEL PEAK  4(2Q32.1) WILD-TYPE" 
                   TCGA-FP-7735                    TCGA-FP-7829 
"DEL PEAK  4(2Q32.1) WILD-TYPE" "DEL PEAK  4(2Q32.1) WILD-TYPE" 
                   TCGA-FP-7916                    TCGA-FP-7998 
"DEL PEAK  4(2Q32.1) WILD-TYPE" "DEL PEAK  4(2Q32.1) WILD-TYPE" 
                   TCGA-HJ-7597                    TCGA-IN-7806 
  "DEL PEAK  4(2Q32.1) MUTATED" "DEL PEAK  4(2Q32.1) WILD-TYPE" 
                   TCGA-IN-7808                    TCGA-IP-7968 
"DEL PEAK  4(2Q32.1) WILD-TYPE" "DEL PEAK  4(2Q32.1) WILD-TYPE" 
                   TCGA-B7-5816                    TCGA-B7-5818 
"DEL PEAK  4(2Q32.1) WILD-TYPE" "DEL PEAK  4(2Q32.1) WILD-TYPE" 
                   TCGA-BR-6452                    TCGA-BR-6455 
"DEL PEAK  4(2Q32.1) WILD-TYPE" "DEL PEAK  4(2Q32.1) WILD-TYPE" 
                   TCGA-BR-6457                    TCGA-BR-6458 
"DEL PEAK  4(2Q32.1) WILD-TYPE"   "DEL PEAK  4(2Q32.1) MUTATED" 
                   TCGA-BR-6563                    TCGA-BR-6564 
"DEL PEAK  4(2Q32.1) WILD-TYPE" "DEL PEAK  4(2Q32.1) WILD-TYPE" 
                   TCGA-BR-6565                    TCGA-BR-6566 
  "DEL PEAK  4(2Q32.1) MUTATED" "DEL PEAK  4(2Q32.1) WILD-TYPE" 
                   TCGA-BR-6705                    TCGA-BR-6706 
"DEL PEAK  4(2Q32.1) WILD-TYPE" "DEL PEAK  4(2Q32.1) WILD-TYPE" 
                   TCGA-BR-6707                    TCGA-BR-6709 
"DEL PEAK  4(2Q32.1) WILD-TYPE" "DEL PEAK  4(2Q32.1) WILD-TYPE" 
                   TCGA-BR-6710                    TCGA-BR-6801 
"DEL PEAK  4(2Q32.1) WILD-TYPE" "DEL PEAK  4(2Q32.1) WILD-TYPE" 
                   TCGA-BR-6802                    TCGA-BR-6803 
"DEL PEAK  4(2Q32.1) WILD-TYPE" "DEL PEAK  4(2Q32.1) WILD-TYPE" 
                   TCGA-BR-6852                    TCGA-BR-7196 
"DEL PEAK  4(2Q32.1) WILD-TYPE" "DEL PEAK  4(2Q32.1) WILD-TYPE" 
                   TCGA-BR-7197                    TCGA-BR-7703 
"DEL PEAK  4(2Q32.1) WILD-TYPE" "DEL PEAK  4(2Q32.1) WILD-TYPE" 
                   TCGA-BR-7704                    TCGA-BR-7707 
"DEL PEAK  4(2Q32.1) WILD-TYPE" "DEL PEAK  4(2Q32.1) WILD-TYPE" 
                   TCGA-BR-7715                    TCGA-BR-7716 
"DEL PEAK  4(2Q32.1) WILD-TYPE" "DEL PEAK  4(2Q32.1) WILD-TYPE" 
                   TCGA-BR-7717                    TCGA-BR-7722 
"DEL PEAK  4(2Q32.1) WILD-TYPE" "DEL PEAK  4(2Q32.1) WILD-TYPE" 
                   TCGA-BR-7723                    TCGA-BR-7851 
"DEL PEAK  4(2Q32.1) WILD-TYPE" "DEL PEAK  4(2Q32.1) WILD-TYPE" 
                   TCGA-BR-7901                    TCGA-BR-7957 
"DEL PEAK  4(2Q32.1) WILD-TYPE" "DEL PEAK  4(2Q32.1) WILD-TYPE" 
                   TCGA-BR-7958                    TCGA-BR-7959 
"DEL PEAK  4(2Q32.1) WILD-TYPE" "DEL PEAK  4(2Q32.1) WILD-TYPE" 
                   TCGA-BR-8059                    TCGA-BR-8060 
"DEL PEAK  4(2Q32.1) WILD-TYPE" "DEL PEAK  4(2Q32.1) WILD-TYPE" 
                   TCGA-BR-8077                    TCGA-BR-8078 
"DEL PEAK  4(2Q32.1) WILD-TYPE" "DEL PEAK  4(2Q32.1) WILD-TYPE" 
                   TCGA-BR-8080                    TCGA-BR-8081 
"DEL PEAK  4(2Q32.1) WILD-TYPE" "DEL PEAK  4(2Q32.1) WILD-TYPE" 
                   TCGA-BR-8284                    TCGA-BR-8285 
"DEL PEAK  4(2Q32.1) WILD-TYPE" "DEL PEAK  4(2Q32.1) WILD-TYPE" 
                   TCGA-BR-8286                    TCGA-BR-8289 
"DEL PEAK  4(2Q32.1) WILD-TYPE" "DEL PEAK  4(2Q32.1) WILD-TYPE" 
                   TCGA-BR-8291                    TCGA-BR-8295 
"DEL PEAK  4(2Q32.1) WILD-TYPE" "DEL PEAK  4(2Q32.1) WILD-TYPE" 
                   TCGA-BR-8296                    TCGA-BR-8297 
"DEL PEAK  4(2Q32.1) WILD-TYPE" "DEL PEAK  4(2Q32.1) WILD-TYPE" 
                   TCGA-CD-5798                    TCGA-CD-5799 
"DEL PEAK  4(2Q32.1) WILD-TYPE" "DEL PEAK  4(2Q32.1) WILD-TYPE" 
                   TCGA-CD-5800                    TCGA-CD-5801 
"DEL PEAK  4(2Q32.1) WILD-TYPE" "DEL PEAK  4(2Q32.1) WILD-TYPE" 
                   TCGA-CD-5802                    TCGA-CD-5803 
"DEL PEAK  4(2Q32.1) WILD-TYPE" "DEL PEAK  4(2Q32.1) WILD-TYPE" 
                   TCGA-CG-4300                    TCGA-CG-4301 
  "DEL PEAK  4(2Q32.1) MUTATED" "DEL PEAK  4(2Q32.1) WILD-TYPE" 
                   TCGA-CG-4304                    TCGA-CG-4305 
"DEL PEAK  4(2Q32.1) WILD-TYPE" "DEL PEAK  4(2Q32.1) WILD-TYPE" 
                   TCGA-CG-4306                    TCGA-CG-4436 
"DEL PEAK  4(2Q32.1) WILD-TYPE" "DEL PEAK  4(2Q32.1) WILD-TYPE" 
                   TCGA-CG-4437                    TCGA-CG-4438 
"DEL PEAK  4(2Q32.1) WILD-TYPE" "DEL PEAK  4(2Q32.1) WILD-TYPE" 
                   TCGA-CG-4440                    TCGA-CG-4441 
"DEL PEAK  4(2Q32.1) WILD-TYPE" "DEL PEAK  4(2Q32.1) WILD-TYPE" 
                   TCGA-CG-4443                    TCGA-CG-4444 
"DEL PEAK  4(2Q32.1) WILD-TYPE"   "DEL PEAK  4(2Q32.1) MUTATED" 
                   TCGA-CG-4449                    TCGA-CG-4455 
"DEL PEAK  4(2Q32.1) WILD-TYPE" "DEL PEAK  4(2Q32.1) WILD-TYPE" 
                   TCGA-CG-4460                    TCGA-CG-4462 
"DEL PEAK  4(2Q32.1) WILD-TYPE"   "DEL PEAK  4(2Q32.1) MUTATED" 
                   TCGA-CG-4465                    TCGA-CG-4466 
"DEL PEAK  4(2Q32.1) WILD-TYPE" "DEL PEAK  4(2Q32.1) WILD-TYPE" 
                   TCGA-CG-4469                    TCGA-CG-4472 
"DEL PEAK  4(2Q32.1) WILD-TYPE"   "DEL PEAK  4(2Q32.1) MUTATED" 
                   TCGA-CG-4474                    TCGA-CG-4477 
"DEL PEAK  4(2Q32.1) WILD-TYPE" "DEL PEAK  4(2Q32.1) WILD-TYPE" 
                   TCGA-CG-5716                    TCGA-CG-5717 
"DEL PEAK  4(2Q32.1) WILD-TYPE" "DEL PEAK  4(2Q32.1) WILD-TYPE" 
                   TCGA-CG-5718                    TCGA-CG-5719 
"DEL PEAK  4(2Q32.1) WILD-TYPE" "DEL PEAK  4(2Q32.1) WILD-TYPE" 
                   TCGA-CG-5720                    TCGA-CG-5721 
  "DEL PEAK  4(2Q32.1) MUTATED" "DEL PEAK  4(2Q32.1) WILD-TYPE" 
                   TCGA-CG-5722                    TCGA-CG-5723 
"DEL PEAK  4(2Q32.1) WILD-TYPE" "DEL PEAK  4(2Q32.1) WILD-TYPE" 
                   TCGA-CG-5724                    TCGA-CG-5725 
  "DEL PEAK  4(2Q32.1) MUTATED"   "DEL PEAK  4(2Q32.1) MUTATED" 
                   TCGA-CG-5726                    TCGA-CG-5727 
"DEL PEAK  4(2Q32.1) WILD-TYPE" "DEL PEAK  4(2Q32.1) WILD-TYPE" 
                   TCGA-CG-5728                    TCGA-CG-5730 
"DEL PEAK  4(2Q32.1) WILD-TYPE" "DEL PEAK  4(2Q32.1) WILD-TYPE" 
                   TCGA-CG-5732                    TCGA-CG-5733 
"DEL PEAK  4(2Q32.1) WILD-TYPE" "DEL PEAK  4(2Q32.1) WILD-TYPE" 
                   TCGA-CG-5734                    TCGA-D7-5577 
"DEL PEAK  4(2Q32.1) WILD-TYPE" "DEL PEAK  4(2Q32.1) WILD-TYPE" 
                   TCGA-D7-5578                    TCGA-D7-5579 
  "DEL PEAK  4(2Q32.1) MUTATED"   "DEL PEAK  4(2Q32.1) MUTATED" 
                   TCGA-D7-6518                    TCGA-D7-6519 
"DEL PEAK  4(2Q32.1) WILD-TYPE" "DEL PEAK  4(2Q32.1) WILD-TYPE" 
                   TCGA-D7-6520                    TCGA-D7-6521 
"DEL PEAK  4(2Q32.1) WILD-TYPE" "DEL PEAK  4(2Q32.1) WILD-TYPE" 
                   TCGA-D7-6522                    TCGA-D7-6524 
"DEL PEAK  4(2Q32.1) WILD-TYPE" "DEL PEAK  4(2Q32.1) WILD-TYPE" 
                   TCGA-D7-6525                    TCGA-D7-6526 
"DEL PEAK  4(2Q32.1) WILD-TYPE" "DEL PEAK  4(2Q32.1) WILD-TYPE" 
                   TCGA-D7-6527                    TCGA-D7-6528 
"DEL PEAK  4(2Q32.1) WILD-TYPE" "DEL PEAK  4(2Q32.1) WILD-TYPE" 
                   TCGA-D7-6815                    TCGA-D7-6817 
"DEL PEAK  4(2Q32.1) WILD-TYPE" "DEL PEAK  4(2Q32.1) WILD-TYPE" 
                   TCGA-D7-6818                    TCGA-D7-6820 
"DEL PEAK  4(2Q32.1) WILD-TYPE" "DEL PEAK  4(2Q32.1) WILD-TYPE" 
                   TCGA-D7-6822                    TCGA-EQ-5647 
"DEL PEAK  4(2Q32.1) WILD-TYPE" "DEL PEAK  4(2Q32.1) WILD-TYPE" 
                   TCGA-EQ-8122                    TCGA-F1-6177 
  "DEL PEAK  4(2Q32.1) MUTATED" "DEL PEAK  4(2Q32.1) WILD-TYPE" 
                   TCGA-F1-6874                    TCGA-F1-6875 
"DEL PEAK  4(2Q32.1) WILD-TYPE" "DEL PEAK  4(2Q32.1) WILD-TYPE" 
                   TCGA-FP-7735                    TCGA-FP-7829 
"DEL PEAK  4(2Q32.1) WILD-TYPE" "DEL PEAK  4(2Q32.1) WILD-TYPE" 
                   TCGA-FP-7916                    TCGA-FP-7998 
"DEL PEAK  4(2Q32.1) WILD-TYPE" "DEL PEAK  4(2Q32.1) WILD-TYPE" 
                   TCGA-HJ-7597                    TCGA-IN-7806 
  "DEL PEAK  4(2Q32.1) MUTATED" "DEL PEAK  4(2Q32.1) WILD-TYPE" 
                   TCGA-IN-7808                    TCGA-IP-7968 
"DEL PEAK  4(2Q32.1) WILD-TYPE" "DEL PEAK  4(2Q32.1) WILD-TYPE" 
[1] "hr=" "1.8"
D30V2, continuous
D30V3, binary
[1] "tbl2"
                               cls
clus                            [,1] [,2]
  DEL PEAK  4(2Q32.1) MUTATED      7   12
  DEL PEAK  4(2Q32.1) WILD-TYPE   58   84
        clus
vv       DEL PEAK  4(2Q32.1) MUTATED DEL PEAK  4(2Q32.1) WILD-TYPE
  FEMALE                           7                            58
  MALE                            12                            84
D30V4, multiclass
D30V5, multiclass
    clus
vv   DEL PEAK  4(2Q32.1) MUTATED DEL PEAK  4(2Q32.1) WILD-TYPE
  T1                           0                             6
  T2                           5                            48
  T3                          10                            49
  T4                           2                            31
D30V6, multiclass
    clus
vv   DEL PEAK  4(2Q32.1) MUTATED DEL PEAK  4(2Q32.1) WILD-TYPE
  N0                           4                            46
  N1                           5                            52
  N2                           4                            20
  N3                           4                            15
D30V7, multiclass
    clus
vv   DEL PEAK  4(2Q32.1) MUTATED DEL PEAK  4(2Q32.1) WILD-TYPE
  M0                          14                           118
  M1                           2                            16
  MX                           3                             8
D30V8, multiclass
     clus
vv    DEL PEAK  4(2Q32.1) MUTATED DEL PEAK  4(2Q32.1) WILD-TYPE
  I                             3                            22
  II                            6                            37
  III                           3                            45
  IV                            4                            25
D30V9, binary
[1] "tbl2"
                               cls
clus                            [,1] [,2]
  DEL PEAK  4(2Q32.1) MUTATED     18    1
  DEL PEAK  4(2Q32.1) WILD-TYPE  138    4
     clus
vv    DEL PEAK  4(2Q32.1) MUTATED DEL PEAK  4(2Q32.1) WILD-TYPE
  NO                            1                             4
  YES                          18                           138

Clustering(31) Variable = Del Peak  5(2q33.3) mutation analysis
D31V1, survival
                   TCGA-B7-5816                    TCGA-B7-5818 
"DEL PEAK  5(2Q33.3) WILD-TYPE" "DEL PEAK  5(2Q33.3) WILD-TYPE" 
                   TCGA-BR-6452                    TCGA-BR-6455 
"DEL PEAK  5(2Q33.3) WILD-TYPE" "DEL PEAK  5(2Q33.3) WILD-TYPE" 
                   TCGA-BR-6457                    TCGA-BR-6458 
"DEL PEAK  5(2Q33.3) WILD-TYPE"   "DEL PEAK  5(2Q33.3) MUTATED" 
                   TCGA-BR-6563                    TCGA-BR-6564 
"DEL PEAK  5(2Q33.3) WILD-TYPE" "DEL PEAK  5(2Q33.3) WILD-TYPE" 
                   TCGA-BR-6565                    TCGA-BR-6566 
  "DEL PEAK  5(2Q33.3) MUTATED" "DEL PEAK  5(2Q33.3) WILD-TYPE" 
                   TCGA-BR-6705                    TCGA-BR-6706 
"DEL PEAK  5(2Q33.3) WILD-TYPE" "DEL PEAK  5(2Q33.3) WILD-TYPE" 
                   TCGA-BR-6707                    TCGA-BR-6709 
"DEL PEAK  5(2Q33.3) WILD-TYPE"   "DEL PEAK  5(2Q33.3) MUTATED" 
                   TCGA-BR-6710                    TCGA-BR-6801 
"DEL PEAK  5(2Q33.3) WILD-TYPE" "DEL PEAK  5(2Q33.3) WILD-TYPE" 
                   TCGA-BR-6802                    TCGA-BR-6803 
"DEL PEAK  5(2Q33.3) WILD-TYPE" "DEL PEAK  5(2Q33.3) WILD-TYPE" 
                   TCGA-BR-6852                    TCGA-BR-7196 
"DEL PEAK  5(2Q33.3) WILD-TYPE" "DEL PEAK  5(2Q33.3) WILD-TYPE" 
                   TCGA-BR-7197                    TCGA-BR-7703 
"DEL PEAK  5(2Q33.3) WILD-TYPE" "DEL PEAK  5(2Q33.3) WILD-TYPE" 
                   TCGA-BR-7704                    TCGA-BR-7707 
"DEL PEAK  5(2Q33.3) WILD-TYPE" "DEL PEAK  5(2Q33.3) WILD-TYPE" 
                   TCGA-BR-7715                    TCGA-BR-7716 
"DEL PEAK  5(2Q33.3) WILD-TYPE" "DEL PEAK  5(2Q33.3) WILD-TYPE" 
                   TCGA-BR-7717                    TCGA-BR-7722 
"DEL PEAK  5(2Q33.3) WILD-TYPE" "DEL PEAK  5(2Q33.3) WILD-TYPE" 
                   TCGA-BR-7723                    TCGA-BR-7851 
"DEL PEAK  5(2Q33.3) WILD-TYPE" "DEL PEAK  5(2Q33.3) WILD-TYPE" 
                   TCGA-BR-7901                    TCGA-BR-7957 
  "DEL PEAK  5(2Q33.3) MUTATED" "DEL PEAK  5(2Q33.3) WILD-TYPE" 
                   TCGA-BR-7958                    TCGA-BR-7959 
"DEL PEAK  5(2Q33.3) WILD-TYPE" "DEL PEAK  5(2Q33.3) WILD-TYPE" 
                   TCGA-BR-8059                    TCGA-BR-8060 
"DEL PEAK  5(2Q33.3) WILD-TYPE" "DEL PEAK  5(2Q33.3) WILD-TYPE" 
                   TCGA-BR-8077                    TCGA-BR-8078 
"DEL PEAK  5(2Q33.3) WILD-TYPE" "DEL PEAK  5(2Q33.3) WILD-TYPE" 
                   TCGA-BR-8080                    TCGA-BR-8081 
"DEL PEAK  5(2Q33.3) WILD-TYPE" "DEL PEAK  5(2Q33.3) WILD-TYPE" 
                   TCGA-BR-8284                    TCGA-BR-8285 
"DEL PEAK  5(2Q33.3) WILD-TYPE" "DEL PEAK  5(2Q33.3) WILD-TYPE" 
                   TCGA-BR-8286                    TCGA-BR-8289 
"DEL PEAK  5(2Q33.3) WILD-TYPE" "DEL PEAK  5(2Q33.3) WILD-TYPE" 
                   TCGA-BR-8291                    TCGA-BR-8295 
"DEL PEAK  5(2Q33.3) WILD-TYPE" "DEL PEAK  5(2Q33.3) WILD-TYPE" 
                   TCGA-BR-8296                    TCGA-BR-8297 
"DEL PEAK  5(2Q33.3) WILD-TYPE" "DEL PEAK  5(2Q33.3) WILD-TYPE" 
                   TCGA-CD-5798                    TCGA-CD-5799 
"DEL PEAK  5(2Q33.3) WILD-TYPE" "DEL PEAK  5(2Q33.3) WILD-TYPE" 
                   TCGA-CD-5800                    TCGA-CD-5801 
"DEL PEAK  5(2Q33.3) WILD-TYPE" "DEL PEAK  5(2Q33.3) WILD-TYPE" 
                   TCGA-CD-5802                    TCGA-CD-5803 
"DEL PEAK  5(2Q33.3) WILD-TYPE" "DEL PEAK  5(2Q33.3) WILD-TYPE" 
                   TCGA-CG-4300                    TCGA-CG-4301 
  "DEL PEAK  5(2Q33.3) MUTATED" "DEL PEAK  5(2Q33.3) WILD-TYPE" 
                   TCGA-CG-4304                    TCGA-CG-4305 
"DEL PEAK  5(2Q33.3) WILD-TYPE" "DEL PEAK  5(2Q33.3) WILD-TYPE" 
                   TCGA-CG-4306                    TCGA-CG-4436 
"DEL PEAK  5(2Q33.3) WILD-TYPE" "DEL PEAK  5(2Q33.3) WILD-TYPE" 
                   TCGA-CG-4437                    TCGA-CG-4438 
"DEL PEAK  5(2Q33.3) WILD-TYPE" "DEL PEAK  5(2Q33.3) WILD-TYPE" 
                   TCGA-CG-4440                    TCGA-CG-4441 
"DEL PEAK  5(2Q33.3) WILD-TYPE" "DEL PEAK  5(2Q33.3) WILD-TYPE" 
                   TCGA-CG-4443                    TCGA-CG-4444 
"DEL PEAK  5(2Q33.3) WILD-TYPE" "DEL PEAK  5(2Q33.3) WILD-TYPE" 
                   TCGA-CG-4449                    TCGA-CG-4455 
"DEL PEAK  5(2Q33.3) WILD-TYPE" "DEL PEAK  5(2Q33.3) WILD-TYPE" 
                   TCGA-CG-4460                    TCGA-CG-4462 
"DEL PEAK  5(2Q33.3) WILD-TYPE"   "DEL PEAK  5(2Q33.3) MUTATED" 
                   TCGA-CG-4465                    TCGA-CG-4466 
"DEL PEAK  5(2Q33.3) WILD-TYPE" "DEL PEAK  5(2Q33.3) WILD-TYPE" 
                   TCGA-CG-4469                    TCGA-CG-4472 
"DEL PEAK  5(2Q33.3) WILD-TYPE" "DEL PEAK  5(2Q33.3) WILD-TYPE" 
                   TCGA-CG-4474                    TCGA-CG-4477 
"DEL PEAK  5(2Q33.3) WILD-TYPE" "DEL PEAK  5(2Q33.3) WILD-TYPE" 
                   TCGA-CG-5716                    TCGA-CG-5717 
"DEL PEAK  5(2Q33.3) WILD-TYPE" "DEL PEAK  5(2Q33.3) WILD-TYPE" 
                   TCGA-CG-5718                    TCGA-CG-5719 
"DEL PEAK  5(2Q33.3) WILD-TYPE" "DEL PEAK  5(2Q33.3) WILD-TYPE" 
                   TCGA-CG-5720                    TCGA-CG-5721 
  "DEL PEAK  5(2Q33.3) MUTATED" "DEL PEAK  5(2Q33.3) WILD-TYPE" 
                   TCGA-CG-5722                    TCGA-CG-5723 
"DEL PEAK  5(2Q33.3) WILD-TYPE" "DEL PEAK  5(2Q33.3) WILD-TYPE" 
                   TCGA-CG-5724                    TCGA-CG-5725 
  "DEL PEAK  5(2Q33.3) MUTATED" "DEL PEAK  5(2Q33.3) WILD-TYPE" 
                   TCGA-CG-5726                    TCGA-CG-5727 
"DEL PEAK  5(2Q33.3) WILD-TYPE" "DEL PEAK  5(2Q33.3) WILD-TYPE" 
                   TCGA-CG-5728                    TCGA-CG-5730 
"DEL PEAK  5(2Q33.3) WILD-TYPE" "DEL PEAK  5(2Q33.3) WILD-TYPE" 
                   TCGA-CG-5732                    TCGA-CG-5733 
"DEL PEAK  5(2Q33.3) WILD-TYPE" "DEL PEAK  5(2Q33.3) WILD-TYPE" 
                   TCGA-CG-5734                    TCGA-D7-5577 
"DEL PEAK  5(2Q33.3) WILD-TYPE" "DEL PEAK  5(2Q33.3) WILD-TYPE" 
                   TCGA-D7-5578                    TCGA-D7-5579 
  "DEL PEAK  5(2Q33.3) MUTATED"   "DEL PEAK  5(2Q33.3) MUTATED" 
                   TCGA-D7-6518                    TCGA-D7-6519 
"DEL PEAK  5(2Q33.3) WILD-TYPE" "DEL PEAK  5(2Q33.3) WILD-TYPE" 
                   TCGA-D7-6520                    TCGA-D7-6521 
"DEL PEAK  5(2Q33.3) WILD-TYPE" "DEL PEAK  5(2Q33.3) WILD-TYPE" 
                   TCGA-D7-6522                    TCGA-D7-6524 
"DEL PEAK  5(2Q33.3) WILD-TYPE" "DEL PEAK  5(2Q33.3) WILD-TYPE" 
                   TCGA-D7-6525                    TCGA-D7-6526 
"DEL PEAK  5(2Q33.3) WILD-TYPE" "DEL PEAK  5(2Q33.3) WILD-TYPE" 
                   TCGA-D7-6527                    TCGA-D7-6528 
"DEL PEAK  5(2Q33.3) WILD-TYPE"   "DEL PEAK  5(2Q33.3) MUTATED" 
                   TCGA-D7-6815                    TCGA-D7-6817 
"DEL PEAK  5(2Q33.3) WILD-TYPE" "DEL PEAK  5(2Q33.3) WILD-TYPE" 
                   TCGA-D7-6818                    TCGA-D7-6820 
"DEL PEAK  5(2Q33.3) WILD-TYPE" "DEL PEAK  5(2Q33.3) WILD-TYPE" 
                   TCGA-D7-6822                    TCGA-EQ-5647 
"DEL PEAK  5(2Q33.3) WILD-TYPE" "DEL PEAK  5(2Q33.3) WILD-TYPE" 
                   TCGA-EQ-8122                    TCGA-F1-6177 
  "DEL PEAK  5(2Q33.3) MUTATED" "DEL PEAK  5(2Q33.3) WILD-TYPE" 
                   TCGA-F1-6874                    TCGA-F1-6875 
"DEL PEAK  5(2Q33.3) WILD-TYPE" "DEL PEAK  5(2Q33.3) WILD-TYPE" 
                   TCGA-FP-7735                    TCGA-FP-7829 
"DEL PEAK  5(2Q33.3) WILD-TYPE" "DEL PEAK  5(2Q33.3) WILD-TYPE" 
                   TCGA-FP-7916                    TCGA-FP-7998 
"DEL PEAK  5(2Q33.3) WILD-TYPE" "DEL PEAK  5(2Q33.3) WILD-TYPE" 
                   TCGA-HJ-7597                    TCGA-IN-7806 
  "DEL PEAK  5(2Q33.3) MUTATED" "DEL PEAK  5(2Q33.3) WILD-TYPE" 
                   TCGA-IN-7808                    TCGA-IP-7968 
"DEL PEAK  5(2Q33.3) WILD-TYPE" "DEL PEAK  5(2Q33.3) WILD-TYPE" 
                   TCGA-B7-5816                    TCGA-B7-5818 
"DEL PEAK  5(2Q33.3) WILD-TYPE" "DEL PEAK  5(2Q33.3) WILD-TYPE" 
                   TCGA-BR-6452                    TCGA-BR-6455 
"DEL PEAK  5(2Q33.3) WILD-TYPE" "DEL PEAK  5(2Q33.3) WILD-TYPE" 
                   TCGA-BR-6457                    TCGA-BR-6458 
"DEL PEAK  5(2Q33.3) WILD-TYPE"   "DEL PEAK  5(2Q33.3) MUTATED" 
                   TCGA-BR-6563                    TCGA-BR-6564 
"DEL PEAK  5(2Q33.3) WILD-TYPE" "DEL PEAK  5(2Q33.3) WILD-TYPE" 
                   TCGA-BR-6565                    TCGA-BR-6566 
  "DEL PEAK  5(2Q33.3) MUTATED" "DEL PEAK  5(2Q33.3) WILD-TYPE" 
                   TCGA-BR-6705                    TCGA-BR-6706 
"DEL PEAK  5(2Q33.3) WILD-TYPE" "DEL PEAK  5(2Q33.3) WILD-TYPE" 
                   TCGA-BR-6707                    TCGA-BR-6709 
"DEL PEAK  5(2Q33.3) WILD-TYPE"   "DEL PEAK  5(2Q33.3) MUTATED" 
                   TCGA-BR-6710                    TCGA-BR-6801 
"DEL PEAK  5(2Q33.3) WILD-TYPE" "DEL PEAK  5(2Q33.3) WILD-TYPE" 
                   TCGA-BR-6802                    TCGA-BR-6803 
"DEL PEAK  5(2Q33.3) WILD-TYPE" "DEL PEAK  5(2Q33.3) WILD-TYPE" 
                   TCGA-BR-6852                    TCGA-BR-7196 
"DEL PEAK  5(2Q33.3) WILD-TYPE" "DEL PEAK  5(2Q33.3) WILD-TYPE" 
                   TCGA-BR-7197                    TCGA-BR-7703 
"DEL PEAK  5(2Q33.3) WILD-TYPE" "DEL PEAK  5(2Q33.3) WILD-TYPE" 
                   TCGA-BR-7704                    TCGA-BR-7707 
"DEL PEAK  5(2Q33.3) WILD-TYPE" "DEL PEAK  5(2Q33.3) WILD-TYPE" 
                   TCGA-BR-7715                    TCGA-BR-7716 
"DEL PEAK  5(2Q33.3) WILD-TYPE" "DEL PEAK  5(2Q33.3) WILD-TYPE" 
                   TCGA-BR-7717                    TCGA-BR-7722 
"DEL PEAK  5(2Q33.3) WILD-TYPE" "DEL PEAK  5(2Q33.3) WILD-TYPE" 
                   TCGA-BR-7723                    TCGA-BR-7851 
"DEL PEAK  5(2Q33.3) WILD-TYPE" "DEL PEAK  5(2Q33.3) WILD-TYPE" 
                   TCGA-BR-7901                    TCGA-BR-7957 
  "DEL PEAK  5(2Q33.3) MUTATED" "DEL PEAK  5(2Q33.3) WILD-TYPE" 
                   TCGA-BR-7958                    TCGA-BR-7959 
"DEL PEAK  5(2Q33.3) WILD-TYPE" "DEL PEAK  5(2Q33.3) WILD-TYPE" 
                   TCGA-BR-8059                    TCGA-BR-8060 
"DEL PEAK  5(2Q33.3) WILD-TYPE" "DEL PEAK  5(2Q33.3) WILD-TYPE" 
                   TCGA-BR-8077                    TCGA-BR-8078 
"DEL PEAK  5(2Q33.3) WILD-TYPE" "DEL PEAK  5(2Q33.3) WILD-TYPE" 
                   TCGA-BR-8080                    TCGA-BR-8081 
"DEL PEAK  5(2Q33.3) WILD-TYPE" "DEL PEAK  5(2Q33.3) WILD-TYPE" 
                   TCGA-BR-8284                    TCGA-BR-8285 
"DEL PEAK  5(2Q33.3) WILD-TYPE" "DEL PEAK  5(2Q33.3) WILD-TYPE" 
                   TCGA-BR-8286                    TCGA-BR-8289 
"DEL PEAK  5(2Q33.3) WILD-TYPE" "DEL PEAK  5(2Q33.3) WILD-TYPE" 
                   TCGA-BR-8291                    TCGA-BR-8295 
"DEL PEAK  5(2Q33.3) WILD-TYPE" "DEL PEAK  5(2Q33.3) WILD-TYPE" 
                   TCGA-BR-8296                    TCGA-BR-8297 
"DEL PEAK  5(2Q33.3) WILD-TYPE" "DEL PEAK  5(2Q33.3) WILD-TYPE" 
                   TCGA-CD-5798                    TCGA-CD-5799 
"DEL PEAK  5(2Q33.3) WILD-TYPE" "DEL PEAK  5(2Q33.3) WILD-TYPE" 
                   TCGA-CD-5800                    TCGA-CD-5801 
"DEL PEAK  5(2Q33.3) WILD-TYPE" "DEL PEAK  5(2Q33.3) WILD-TYPE" 
                   TCGA-CD-5802                    TCGA-CD-5803 
"DEL PEAK  5(2Q33.3) WILD-TYPE" "DEL PEAK  5(2Q33.3) WILD-TYPE" 
                   TCGA-CG-4300                    TCGA-CG-4301 
  "DEL PEAK  5(2Q33.3) MUTATED" "DEL PEAK  5(2Q33.3) WILD-TYPE" 
                   TCGA-CG-4304                    TCGA-CG-4305 
"DEL PEAK  5(2Q33.3) WILD-TYPE" "DEL PEAK  5(2Q33.3) WILD-TYPE" 
                   TCGA-CG-4306                    TCGA-CG-4436 
"DEL PEAK  5(2Q33.3) WILD-TYPE" "DEL PEAK  5(2Q33.3) WILD-TYPE" 
                   TCGA-CG-4437                    TCGA-CG-4438 
"DEL PEAK  5(2Q33.3) WILD-TYPE" "DEL PEAK  5(2Q33.3) WILD-TYPE" 
                   TCGA-CG-4440                    TCGA-CG-4441 
"DEL PEAK  5(2Q33.3) WILD-TYPE" "DEL PEAK  5(2Q33.3) WILD-TYPE" 
                   TCGA-CG-4443                    TCGA-CG-4444 
"DEL PEAK  5(2Q33.3) WILD-TYPE" "DEL PEAK  5(2Q33.3) WILD-TYPE" 
                   TCGA-CG-4449                    TCGA-CG-4455 
"DEL PEAK  5(2Q33.3) WILD-TYPE" "DEL PEAK  5(2Q33.3) WILD-TYPE" 
                   TCGA-CG-4460                    TCGA-CG-4462 
"DEL PEAK  5(2Q33.3) WILD-TYPE"   "DEL PEAK  5(2Q33.3) MUTATED" 
                   TCGA-CG-4465                    TCGA-CG-4466 
"DEL PEAK  5(2Q33.3) WILD-TYPE" "DEL PEAK  5(2Q33.3) WILD-TYPE" 
                   TCGA-CG-4469                    TCGA-CG-4472 
"DEL PEAK  5(2Q33.3) WILD-TYPE" "DEL PEAK  5(2Q33.3) WILD-TYPE" 
                   TCGA-CG-4474                    TCGA-CG-4477 
"DEL PEAK  5(2Q33.3) WILD-TYPE" "DEL PEAK  5(2Q33.3) WILD-TYPE" 
                   TCGA-CG-5716                    TCGA-CG-5717 
"DEL PEAK  5(2Q33.3) WILD-TYPE" "DEL PEAK  5(2Q33.3) WILD-TYPE" 
                   TCGA-CG-5718                    TCGA-CG-5719 
"DEL PEAK  5(2Q33.3) WILD-TYPE" "DEL PEAK  5(2Q33.3) WILD-TYPE" 
                   TCGA-CG-5720                    TCGA-CG-5721 
  "DEL PEAK  5(2Q33.3) MUTATED" "DEL PEAK  5(2Q33.3) WILD-TYPE" 
                   TCGA-CG-5722                    TCGA-CG-5723 
"DEL PEAK  5(2Q33.3) WILD-TYPE" "DEL PEAK  5(2Q33.3) WILD-TYPE" 
                   TCGA-CG-5724                    TCGA-CG-5725 
  "DEL PEAK  5(2Q33.3) MUTATED" "DEL PEAK  5(2Q33.3) WILD-TYPE" 
                   TCGA-CG-5726                    TCGA-CG-5727 
"DEL PEAK  5(2Q33.3) WILD-TYPE" "DEL PEAK  5(2Q33.3) WILD-TYPE" 
                   TCGA-CG-5728                    TCGA-CG-5730 
"DEL PEAK  5(2Q33.3) WILD-TYPE" "DEL PEAK  5(2Q33.3) WILD-TYPE" 
                   TCGA-CG-5732                    TCGA-CG-5733 
"DEL PEAK  5(2Q33.3) WILD-TYPE" "DEL PEAK  5(2Q33.3) WILD-TYPE" 
                   TCGA-CG-5734                    TCGA-D7-5577 
"DEL PEAK  5(2Q33.3) WILD-TYPE" "DEL PEAK  5(2Q33.3) WILD-TYPE" 
                   TCGA-D7-5578                    TCGA-D7-5579 
  "DEL PEAK  5(2Q33.3) MUTATED"   "DEL PEAK  5(2Q33.3) MUTATED" 
                   TCGA-D7-6518                    TCGA-D7-6519 
"DEL PEAK  5(2Q33.3) WILD-TYPE" "DEL PEAK  5(2Q33.3) WILD-TYPE" 
                   TCGA-D7-6520                    TCGA-D7-6521 
"DEL PEAK  5(2Q33.3) WILD-TYPE" "DEL PEAK  5(2Q33.3) WILD-TYPE" 
                   TCGA-D7-6522                    TCGA-D7-6524 
"DEL PEAK  5(2Q33.3) WILD-TYPE" "DEL PEAK  5(2Q33.3) WILD-TYPE" 
                   TCGA-D7-6525                    TCGA-D7-6526 
"DEL PEAK  5(2Q33.3) WILD-TYPE" "DEL PEAK  5(2Q33.3) WILD-TYPE" 
                   TCGA-D7-6527                    TCGA-D7-6528 
"DEL PEAK  5(2Q33.3) WILD-TYPE"   "DEL PEAK  5(2Q33.3) MUTATED" 
                   TCGA-D7-6815                    TCGA-D7-6817 
"DEL PEAK  5(2Q33.3) WILD-TYPE" "DEL PEAK  5(2Q33.3) WILD-TYPE" 
                   TCGA-D7-6818                    TCGA-D7-6820 
"DEL PEAK  5(2Q33.3) WILD-TYPE" "DEL PEAK  5(2Q33.3) WILD-TYPE" 
                   TCGA-D7-6822                    TCGA-EQ-5647 
"DEL PEAK  5(2Q33.3) WILD-TYPE" "DEL PEAK  5(2Q33.3) WILD-TYPE" 
                   TCGA-EQ-8122                    TCGA-F1-6177 
  "DEL PEAK  5(2Q33.3) MUTATED" "DEL PEAK  5(2Q33.3) WILD-TYPE" 
                   TCGA-F1-6874                    TCGA-F1-6875 
"DEL PEAK  5(2Q33.3) WILD-TYPE" "DEL PEAK  5(2Q33.3) WILD-TYPE" 
                   TCGA-FP-7735                    TCGA-FP-7829 
"DEL PEAK  5(2Q33.3) WILD-TYPE" "DEL PEAK  5(2Q33.3) WILD-TYPE" 
                   TCGA-FP-7916                    TCGA-FP-7998 
"DEL PEAK  5(2Q33.3) WILD-TYPE" "DEL PEAK  5(2Q33.3) WILD-TYPE" 
                   TCGA-HJ-7597                    TCGA-IN-7806 
  "DEL PEAK  5(2Q33.3) MUTATED" "DEL PEAK  5(2Q33.3) WILD-TYPE" 
                   TCGA-IN-7808                    TCGA-IP-7968 
"DEL PEAK  5(2Q33.3) WILD-TYPE" "DEL PEAK  5(2Q33.3) WILD-TYPE" 
                   TCGA-B7-5816                    TCGA-B7-5818 
"DEL PEAK  5(2Q33.3) WILD-TYPE" "DEL PEAK  5(2Q33.3) WILD-TYPE" 
                   TCGA-BR-6452                    TCGA-BR-6455 
"DEL PEAK  5(2Q33.3) WILD-TYPE" "DEL PEAK  5(2Q33.3) WILD-TYPE" 
                   TCGA-BR-6457                    TCGA-BR-6458 
"DEL PEAK  5(2Q33.3) WILD-TYPE"   "DEL PEAK  5(2Q33.3) MUTATED" 
                   TCGA-BR-6563                    TCGA-BR-6564 
"DEL PEAK  5(2Q33.3) WILD-TYPE" "DEL PEAK  5(2Q33.3) WILD-TYPE" 
                   TCGA-BR-6565                    TCGA-BR-6566 
  "DEL PEAK  5(2Q33.3) MUTATED" "DEL PEAK  5(2Q33.3) WILD-TYPE" 
                   TCGA-BR-6705                    TCGA-BR-6706 
"DEL PEAK  5(2Q33.3) WILD-TYPE" "DEL PEAK  5(2Q33.3) WILD-TYPE" 
                   TCGA-BR-6707                    TCGA-BR-6709 
"DEL PEAK  5(2Q33.3) WILD-TYPE"   "DEL PEAK  5(2Q33.3) MUTATED" 
                   TCGA-BR-6710                    TCGA-BR-6801 
"DEL PEAK  5(2Q33.3) WILD-TYPE" "DEL PEAK  5(2Q33.3) WILD-TYPE" 
                   TCGA-BR-6802                    TCGA-BR-6803 
"DEL PEAK  5(2Q33.3) WILD-TYPE" "DEL PEAK  5(2Q33.3) WILD-TYPE" 
                   TCGA-BR-6852                    TCGA-BR-7196 
"DEL PEAK  5(2Q33.3) WILD-TYPE" "DEL PEAK  5(2Q33.3) WILD-TYPE" 
                   TCGA-BR-7197                    TCGA-BR-7703 
"DEL PEAK  5(2Q33.3) WILD-TYPE" "DEL PEAK  5(2Q33.3) WILD-TYPE" 
                   TCGA-BR-7704                    TCGA-BR-7707 
"DEL PEAK  5(2Q33.3) WILD-TYPE" "DEL PEAK  5(2Q33.3) WILD-TYPE" 
                   TCGA-BR-7715                    TCGA-BR-7716 
"DEL PEAK  5(2Q33.3) WILD-TYPE" "DEL PEAK  5(2Q33.3) WILD-TYPE" 
                   TCGA-BR-7717                    TCGA-BR-7722 
"DEL PEAK  5(2Q33.3) WILD-TYPE" "DEL PEAK  5(2Q33.3) WILD-TYPE" 
                   TCGA-BR-7723                    TCGA-BR-7851 
"DEL PEAK  5(2Q33.3) WILD-TYPE" "DEL PEAK  5(2Q33.3) WILD-TYPE" 
                   TCGA-BR-7901                    TCGA-BR-7957 
  "DEL PEAK  5(2Q33.3) MUTATED" "DEL PEAK  5(2Q33.3) WILD-TYPE" 
                   TCGA-BR-7958                    TCGA-BR-7959 
"DEL PEAK  5(2Q33.3) WILD-TYPE" "DEL PEAK  5(2Q33.3) WILD-TYPE" 
                   TCGA-BR-8059                    TCGA-BR-8060 
"DEL PEAK  5(2Q33.3) WILD-TYPE" "DEL PEAK  5(2Q33.3) WILD-TYPE" 
                   TCGA-BR-8077                    TCGA-BR-8078 
"DEL PEAK  5(2Q33.3) WILD-TYPE" "DEL PEAK  5(2Q33.3) WILD-TYPE" 
                   TCGA-BR-8080                    TCGA-BR-8081 
"DEL PEAK  5(2Q33.3) WILD-TYPE" "DEL PEAK  5(2Q33.3) WILD-TYPE" 
                   TCGA-BR-8284                    TCGA-BR-8285 
"DEL PEAK  5(2Q33.3) WILD-TYPE" "DEL PEAK  5(2Q33.3) WILD-TYPE" 
                   TCGA-BR-8286                    TCGA-BR-8289 
"DEL PEAK  5(2Q33.3) WILD-TYPE" "DEL PEAK  5(2Q33.3) WILD-TYPE" 
                   TCGA-BR-8291                    TCGA-BR-8295 
"DEL PEAK  5(2Q33.3) WILD-TYPE" "DEL PEAK  5(2Q33.3) WILD-TYPE" 
                   TCGA-BR-8296                    TCGA-BR-8297 
"DEL PEAK  5(2Q33.3) WILD-TYPE" "DEL PEAK  5(2Q33.3) WILD-TYPE" 
                   TCGA-CD-5798                    TCGA-CD-5799 
"DEL PEAK  5(2Q33.3) WILD-TYPE" "DEL PEAK  5(2Q33.3) WILD-TYPE" 
                   TCGA-CD-5800                    TCGA-CD-5801 
"DEL PEAK  5(2Q33.3) WILD-TYPE" "DEL PEAK  5(2Q33.3) WILD-TYPE" 
                   TCGA-CD-5802                    TCGA-CD-5803 
"DEL PEAK  5(2Q33.3) WILD-TYPE" "DEL PEAK  5(2Q33.3) WILD-TYPE" 
                   TCGA-CG-4300                    TCGA-CG-4301 
  "DEL PEAK  5(2Q33.3) MUTATED" "DEL PEAK  5(2Q33.3) WILD-TYPE" 
                   TCGA-CG-4304                    TCGA-CG-4305 
"DEL PEAK  5(2Q33.3) WILD-TYPE" "DEL PEAK  5(2Q33.3) WILD-TYPE" 
                   TCGA-CG-4306                    TCGA-CG-4436 
"DEL PEAK  5(2Q33.3) WILD-TYPE" "DEL PEAK  5(2Q33.3) WILD-TYPE" 
                   TCGA-CG-4437                    TCGA-CG-4438 
"DEL PEAK  5(2Q33.3) WILD-TYPE" "DEL PEAK  5(2Q33.3) WILD-TYPE" 
                   TCGA-CG-4440                    TCGA-CG-4441 
"DEL PEAK  5(2Q33.3) WILD-TYPE" "DEL PEAK  5(2Q33.3) WILD-TYPE" 
                   TCGA-CG-4443                    TCGA-CG-4444 
"DEL PEAK  5(2Q33.3) WILD-TYPE" "DEL PEAK  5(2Q33.3) WILD-TYPE" 
                   TCGA-CG-4449                    TCGA-CG-4455 
"DEL PEAK  5(2Q33.3) WILD-TYPE" "DEL PEAK  5(2Q33.3) WILD-TYPE" 
                   TCGA-CG-4460                    TCGA-CG-4462 
"DEL PEAK  5(2Q33.3) WILD-TYPE"   "DEL PEAK  5(2Q33.3) MUTATED" 
                   TCGA-CG-4465                    TCGA-CG-4466 
"DEL PEAK  5(2Q33.3) WILD-TYPE" "DEL PEAK  5(2Q33.3) WILD-TYPE" 
                   TCGA-CG-4469                    TCGA-CG-4472 
"DEL PEAK  5(2Q33.3) WILD-TYPE" "DEL PEAK  5(2Q33.3) WILD-TYPE" 
                   TCGA-CG-4474                    TCGA-CG-4477 
"DEL PEAK  5(2Q33.3) WILD-TYPE" "DEL PEAK  5(2Q33.3) WILD-TYPE" 
                   TCGA-CG-5716                    TCGA-CG-5717 
"DEL PEAK  5(2Q33.3) WILD-TYPE" "DEL PEAK  5(2Q33.3) WILD-TYPE" 
                   TCGA-CG-5718                    TCGA-CG-5719 
"DEL PEAK  5(2Q33.3) WILD-TYPE" "DEL PEAK  5(2Q33.3) WILD-TYPE" 
                   TCGA-CG-5720                    TCGA-CG-5721 
  "DEL PEAK  5(2Q33.3) MUTATED" "DEL PEAK  5(2Q33.3) WILD-TYPE" 
                   TCGA-CG-5722                    TCGA-CG-5723 
"DEL PEAK  5(2Q33.3) WILD-TYPE" "DEL PEAK  5(2Q33.3) WILD-TYPE" 
                   TCGA-CG-5724                    TCGA-CG-5725 
  "DEL PEAK  5(2Q33.3) MUTATED" "DEL PEAK  5(2Q33.3) WILD-TYPE" 
                   TCGA-CG-5726                    TCGA-CG-5727 
"DEL PEAK  5(2Q33.3) WILD-TYPE" "DEL PEAK  5(2Q33.3) WILD-TYPE" 
                   TCGA-CG-5728                    TCGA-CG-5730 
"DEL PEAK  5(2Q33.3) WILD-TYPE" "DEL PEAK  5(2Q33.3) WILD-TYPE" 
                   TCGA-CG-5732                    TCGA-CG-5733 
"DEL PEAK  5(2Q33.3) WILD-TYPE" "DEL PEAK  5(2Q33.3) WILD-TYPE" 
                   TCGA-CG-5734                    TCGA-D7-5577 
"DEL PEAK  5(2Q33.3) WILD-TYPE" "DEL PEAK  5(2Q33.3) WILD-TYPE" 
                   TCGA-D7-5578                    TCGA-D7-5579 
  "DEL PEAK  5(2Q33.3) MUTATED"   "DEL PEAK  5(2Q33.3) MUTATED" 
                   TCGA-D7-6518                    TCGA-D7-6519 
"DEL PEAK  5(2Q33.3) WILD-TYPE" "DEL PEAK  5(2Q33.3) WILD-TYPE" 
                   TCGA-D7-6520                    TCGA-D7-6521 
"DEL PEAK  5(2Q33.3) WILD-TYPE" "DEL PEAK  5(2Q33.3) WILD-TYPE" 
                   TCGA-D7-6522                    TCGA-D7-6524 
"DEL PEAK  5(2Q33.3) WILD-TYPE" "DEL PEAK  5(2Q33.3) WILD-TYPE" 
                   TCGA-D7-6525                    TCGA-D7-6526 
"DEL PEAK  5(2Q33.3) WILD-TYPE" "DEL PEAK  5(2Q33.3) WILD-TYPE" 
                   TCGA-D7-6527                    TCGA-D7-6528 
"DEL PEAK  5(2Q33.3) WILD-TYPE"   "DEL PEAK  5(2Q33.3) MUTATED" 
                   TCGA-D7-6815                    TCGA-D7-6817 
"DEL PEAK  5(2Q33.3) WILD-TYPE" "DEL PEAK  5(2Q33.3) WILD-TYPE" 
                   TCGA-D7-6818                    TCGA-D7-6820 
"DEL PEAK  5(2Q33.3) WILD-TYPE" "DEL PEAK  5(2Q33.3) WILD-TYPE" 
                   TCGA-D7-6822                    TCGA-EQ-5647 
"DEL PEAK  5(2Q33.3) WILD-TYPE" "DEL PEAK  5(2Q33.3) WILD-TYPE" 
                   TCGA-EQ-8122                    TCGA-F1-6177 
  "DEL PEAK  5(2Q33.3) MUTATED" "DEL PEAK  5(2Q33.3) WILD-TYPE" 
                   TCGA-F1-6874                    TCGA-F1-6875 
"DEL PEAK  5(2Q33.3) WILD-TYPE" "DEL PEAK  5(2Q33.3) WILD-TYPE" 
                   TCGA-FP-7735                    TCGA-FP-7829 
"DEL PEAK  5(2Q33.3) WILD-TYPE" "DEL PEAK  5(2Q33.3) WILD-TYPE" 
                   TCGA-FP-7916                    TCGA-FP-7998 
"DEL PEAK  5(2Q33.3) WILD-TYPE" "DEL PEAK  5(2Q33.3) WILD-TYPE" 
                   TCGA-HJ-7597                    TCGA-IN-7806 
  "DEL PEAK  5(2Q33.3) MUTATED" "DEL PEAK  5(2Q33.3) WILD-TYPE" 
                   TCGA-IN-7808                    TCGA-IP-7968 
"DEL PEAK  5(2Q33.3) WILD-TYPE" "DEL PEAK  5(2Q33.3) WILD-TYPE" 
[1] "hr=" "2.3"
D31V2, continuous
D31V3, binary
[1] "tbl2"
                               cls
clus                            [,1] [,2]
  DEL PEAK  5(2Q33.3) MUTATED      8    8
  DEL PEAK  5(2Q33.3) WILD-TYPE   57   88
        clus
vv       DEL PEAK  5(2Q33.3) MUTATED DEL PEAK  5(2Q33.3) WILD-TYPE
  FEMALE                           8                            57
  MALE                             8                            88
D31V4, multiclass
D31V5, multiclass
    clus
vv   DEL PEAK  5(2Q33.3) MUTATED DEL PEAK  5(2Q33.3) WILD-TYPE
  T1                           0                             6
  T2                           5                            48
  T3                          10                            49
  T4                           1                            32
D31V6, multiclass
    clus
vv   DEL PEAK  5(2Q33.3) MUTATED DEL PEAK  5(2Q33.3) WILD-TYPE
  N0                           5                            45
  N1                           3                            54
  N2                           4                            20
  N3                           4                            15
D31V7, multiclass
    clus
vv   DEL PEAK  5(2Q33.3) MUTATED DEL PEAK  5(2Q33.3) WILD-TYPE
  M0                          11                           121
  M1                           2                            16
  MX                           3                             8
D31V8, multiclass
     clus
vv    DEL PEAK  5(2Q33.3) MUTATED DEL PEAK  5(2Q33.3) WILD-TYPE
  I                             4                            21
  II                            5                            38
  III                           4                            44
  IV                            3                            26
D31V9, binary
[1] "tbl2"
                               cls
clus                            [,1] [,2]
  DEL PEAK  5(2Q33.3) MUTATED     14    2
  DEL PEAK  5(2Q33.3) WILD-TYPE  142    3
     clus
vv    DEL PEAK  5(2Q33.3) MUTATED DEL PEAK  5(2Q33.3) WILD-TYPE
  NO                            2                             3
  YES                          14                           142

Clustering(32) Variable = Del Peak  6(2q37.2) mutation analysis
D32V1, survival
                   TCGA-B7-5816                    TCGA-B7-5818 
"DEL PEAK  6(2Q37.2) WILD-TYPE" "DEL PEAK  6(2Q37.2) WILD-TYPE" 
                   TCGA-BR-6452                    TCGA-BR-6455 
"DEL PEAK  6(2Q37.2) WILD-TYPE" "DEL PEAK  6(2Q37.2) WILD-TYPE" 
                   TCGA-BR-6457                    TCGA-BR-6458 
"DEL PEAK  6(2Q37.2) WILD-TYPE" "DEL PEAK  6(2Q37.2) WILD-TYPE" 
                   TCGA-BR-6563                    TCGA-BR-6564 
"DEL PEAK  6(2Q37.2) WILD-TYPE" "DEL PEAK  6(2Q37.2) WILD-TYPE" 
                   TCGA-BR-6565                    TCGA-BR-6566 
  "DEL PEAK  6(2Q37.2) MUTATED" "DEL PEAK  6(2Q37.2) WILD-TYPE" 
                   TCGA-BR-6705                    TCGA-BR-6706 
"DEL PEAK  6(2Q37.2) WILD-TYPE" "DEL PEAK  6(2Q37.2) WILD-TYPE" 
                   TCGA-BR-6707                    TCGA-BR-6709 
"DEL PEAK  6(2Q37.2) WILD-TYPE"   "DEL PEAK  6(2Q37.2) MUTATED" 
                   TCGA-BR-6710                    TCGA-BR-6801 
"DEL PEAK  6(2Q37.2) WILD-TYPE" "DEL PEAK  6(2Q37.2) WILD-TYPE" 
                   TCGA-BR-6802                    TCGA-BR-6803 
"DEL PEAK  6(2Q37.2) WILD-TYPE" "DEL PEAK  6(2Q37.2) WILD-TYPE" 
                   TCGA-BR-6852                    TCGA-BR-7196 
"DEL PEAK  6(2Q37.2) WILD-TYPE" "DEL PEAK  6(2Q37.2) WILD-TYPE" 
                   TCGA-BR-7197                    TCGA-BR-7703 
"DEL PEAK  6(2Q37.2) WILD-TYPE" "DEL PEAK  6(2Q37.2) WILD-TYPE" 
                   TCGA-BR-7704                    TCGA-BR-7707 
  "DEL PEAK  6(2Q37.2) MUTATED" "DEL PEAK  6(2Q37.2) WILD-TYPE" 
                   TCGA-BR-7715                    TCGA-BR-7716 
"DEL PEAK  6(2Q37.2) WILD-TYPE" "DEL PEAK  6(2Q37.2) WILD-TYPE" 
                   TCGA-BR-7717                    TCGA-BR-7722 
"DEL PEAK  6(2Q37.2) WILD-TYPE" "DEL PEAK  6(2Q37.2) WILD-TYPE" 
                   TCGA-BR-7723                    TCGA-BR-7851 
"DEL PEAK  6(2Q37.2) WILD-TYPE" "DEL PEAK  6(2Q37.2) WILD-TYPE" 
                   TCGA-BR-7901                    TCGA-BR-7957 
  "DEL PEAK  6(2Q37.2) MUTATED" "DEL PEAK  6(2Q37.2) WILD-TYPE" 
                   TCGA-BR-7958                    TCGA-BR-7959 
"DEL PEAK  6(2Q37.2) WILD-TYPE" "DEL PEAK  6(2Q37.2) WILD-TYPE" 
                   TCGA-BR-8059                    TCGA-BR-8060 
"DEL PEAK  6(2Q37.2) WILD-TYPE" "DEL PEAK  6(2Q37.2) WILD-TYPE" 
                   TCGA-BR-8077                    TCGA-BR-8078 
"DEL PEAK  6(2Q37.2) WILD-TYPE" "DEL PEAK  6(2Q37.2) WILD-TYPE" 
                   TCGA-BR-8080                    TCGA-BR-8081 
"DEL PEAK  6(2Q37.2) WILD-TYPE" "DEL PEAK  6(2Q37.2) WILD-TYPE" 
                   TCGA-BR-8284                    TCGA-BR-8285 
"DEL PEAK  6(2Q37.2) WILD-TYPE" "DEL PEAK  6(2Q37.2) WILD-TYPE" 
                   TCGA-BR-8286                    TCGA-BR-8289 
"DEL PEAK  6(2Q37.2) WILD-TYPE" "DEL PEAK  6(2Q37.2) WILD-TYPE" 
                   TCGA-BR-8291                    TCGA-BR-8295 
"DEL PEAK  6(2Q37.2) WILD-TYPE" "DEL PEAK  6(2Q37.2) WILD-TYPE" 
                   TCGA-BR-8296                    TCGA-BR-8297 
"DEL PEAK  6(2Q37.2) WILD-TYPE" "DEL PEAK  6(2Q37.2) WILD-TYPE" 
                   TCGA-CD-5798                    TCGA-CD-5799 
"DEL PEAK  6(2Q37.2) WILD-TYPE" "DEL PEAK  6(2Q37.2) WILD-TYPE" 
                   TCGA-CD-5800                    TCGA-CD-5801 
  "DEL PEAK  6(2Q37.2) MUTATED" "DEL PEAK  6(2Q37.2) WILD-TYPE" 
                   TCGA-CD-5802                    TCGA-CD-5803 
"DEL PEAK  6(2Q37.2) WILD-TYPE" "DEL PEAK  6(2Q37.2) WILD-TYPE" 
                   TCGA-CG-4300                    TCGA-CG-4301 
  "DEL PEAK  6(2Q37.2) MUTATED" "DEL PEAK  6(2Q37.2) WILD-TYPE" 
                   TCGA-CG-4304                    TCGA-CG-4305 
"DEL PEAK  6(2Q37.2) WILD-TYPE" "DEL PEAK  6(2Q37.2) WILD-TYPE" 
                   TCGA-CG-4306                    TCGA-CG-4436 
"DEL PEAK  6(2Q37.2) WILD-TYPE" "DEL PEAK  6(2Q37.2) WILD-TYPE" 
                   TCGA-CG-4437                    TCGA-CG-4438 
  "DEL PEAK  6(2Q37.2) MUTATED" "DEL PEAK  6(2Q37.2) WILD-TYPE" 
                   TCGA-CG-4440                    TCGA-CG-4441 
"DEL PEAK  6(2Q37.2) WILD-TYPE"   "DEL PEAK  6(2Q37.2) MUTATED" 
                   TCGA-CG-4443                    TCGA-CG-4444 
"DEL PEAK  6(2Q37.2) WILD-TYPE" "DEL PEAK  6(2Q37.2) WILD-TYPE" 
                   TCGA-CG-4449                    TCGA-CG-4455 
  "DEL PEAK  6(2Q37.2) MUTATED" "DEL PEAK  6(2Q37.2) WILD-TYPE" 
                   TCGA-CG-4460                    TCGA-CG-4462 
"DEL PEAK  6(2Q37.2) WILD-TYPE" "DEL PEAK  6(2Q37.2) WILD-TYPE" 
                   TCGA-CG-4465                    TCGA-CG-4466 
"DEL PEAK  6(2Q37.2) WILD-TYPE"   "DEL PEAK  6(2Q37.2) MUTATED" 
                   TCGA-CG-4469                    TCGA-CG-4472 
"DEL PEAK  6(2Q37.2) WILD-TYPE"   "DEL PEAK  6(2Q37.2) MUTATED" 
                   TCGA-CG-4474                    TCGA-CG-4477 
"DEL PEAK  6(2Q37.2) WILD-TYPE" "DEL PEAK  6(2Q37.2) WILD-TYPE" 
                   TCGA-CG-5716                    TCGA-CG-5717 
"DEL PEAK  6(2Q37.2) WILD-TYPE" "DEL PEAK  6(2Q37.2) WILD-TYPE" 
                   TCGA-CG-5718                    TCGA-CG-5719 
"DEL PEAK  6(2Q37.2) WILD-TYPE"   "DEL PEAK  6(2Q37.2) MUTATED" 
                   TCGA-CG-5720                    TCGA-CG-5721 
"DEL PEAK  6(2Q37.2) WILD-TYPE" "DEL PEAK  6(2Q37.2) WILD-TYPE" 
                   TCGA-CG-5722                    TCGA-CG-5723 
"DEL PEAK  6(2Q37.2) WILD-TYPE" "DEL PEAK  6(2Q37.2) WILD-TYPE" 
                   TCGA-CG-5724                    TCGA-CG-5725 
"DEL PEAK  6(2Q37.2) WILD-TYPE" "DEL PEAK  6(2Q37.2) WILD-TYPE" 
                   TCGA-CG-5726                    TCGA-CG-5727 
"DEL PEAK  6(2Q37.2) WILD-TYPE" "DEL PEAK  6(2Q37.2) WILD-TYPE" 
                   TCGA-CG-5728                    TCGA-CG-5730 
"DEL PEAK  6(2Q37.2) WILD-TYPE" "DEL PEAK  6(2Q37.2) WILD-TYPE" 
                   TCGA-CG-5732                    TCGA-CG-5733 
"DEL PEAK  6(2Q37.2) WILD-TYPE" "DEL PEAK  6(2Q37.2) WILD-TYPE" 
                   TCGA-CG-5734                    TCGA-D7-5577 
"DEL PEAK  6(2Q37.2) WILD-TYPE" "DEL PEAK  6(2Q37.2) WILD-TYPE" 
                   TCGA-D7-5578                    TCGA-D7-5579 
  "DEL PEAK  6(2Q37.2) MUTATED" "DEL PEAK  6(2Q37.2) WILD-TYPE" 
                   TCGA-D7-6518                    TCGA-D7-6519 
"DEL PEAK  6(2Q37.2) WILD-TYPE"   "DEL PEAK  6(2Q37.2) MUTATED" 
                   TCGA-D7-6520                    TCGA-D7-6521 
"DEL PEAK  6(2Q37.2) WILD-TYPE" "DEL PEAK  6(2Q37.2) WILD-TYPE" 
                   TCGA-D7-6522                    TCGA-D7-6524 
"DEL PEAK  6(2Q37.2) WILD-TYPE" "DEL PEAK  6(2Q37.2) WILD-TYPE" 
                   TCGA-D7-6525                    TCGA-D7-6526 
"DEL PEAK  6(2Q37.2) WILD-TYPE" "DEL PEAK  6(2Q37.2) WILD-TYPE" 
                   TCGA-D7-6527                    TCGA-D7-6528 
"DEL PEAK  6(2Q37.2) WILD-TYPE"   "DEL PEAK  6(2Q37.2) MUTATED" 
                   TCGA-D7-6815                    TCGA-D7-6817 
  "DEL PEAK  6(2Q37.2) MUTATED" "DEL PEAK  6(2Q37.2) WILD-TYPE" 
                   TCGA-D7-6818                    TCGA-D7-6820 
"DEL PEAK  6(2Q37.2) WILD-TYPE" "DEL PEAK  6(2Q37.2) WILD-TYPE" 
                   TCGA-D7-6822                    TCGA-EQ-5647 
  "DEL PEAK  6(2Q37.2) MUTATED" "DEL PEAK  6(2Q37.2) WILD-TYPE" 
                   TCGA-EQ-8122                    TCGA-F1-6177 
  "DEL PEAK  6(2Q37.2) MUTATED" "DEL PEAK  6(2Q37.2) WILD-TYPE" 
                   TCGA-F1-6874                    TCGA-F1-6875 
"DEL PEAK  6(2Q37.2) WILD-TYPE" "DEL PEAK  6(2Q37.2) WILD-TYPE" 
                   TCGA-FP-7735                    TCGA-FP-7829 
"DEL PEAK  6(2Q37.2) WILD-TYPE" "DEL PEAK  6(2Q37.2) WILD-TYPE" 
                   TCGA-FP-7916                    TCGA-FP-7998 
"DEL PEAK  6(2Q37.2) WILD-TYPE" "DEL PEAK  6(2Q37.2) WILD-TYPE" 
                   TCGA-HJ-7597                    TCGA-IN-7806 
  "DEL PEAK  6(2Q37.2) MUTATED" "DEL PEAK  6(2Q37.2) WILD-TYPE" 
                   TCGA-IN-7808                    TCGA-IP-7968 
"DEL PEAK  6(2Q37.2) WILD-TYPE" "DEL PEAK  6(2Q37.2) WILD-TYPE" 
                   TCGA-B7-5816                    TCGA-B7-5818 
"DEL PEAK  6(2Q37.2) WILD-TYPE" "DEL PEAK  6(2Q37.2) WILD-TYPE" 
                   TCGA-BR-6452                    TCGA-BR-6455 
"DEL PEAK  6(2Q37.2) WILD-TYPE" "DEL PEAK  6(2Q37.2) WILD-TYPE" 
                   TCGA-BR-6457                    TCGA-BR-6458 
"DEL PEAK  6(2Q37.2) WILD-TYPE" "DEL PEAK  6(2Q37.2) WILD-TYPE" 
                   TCGA-BR-6563                    TCGA-BR-6564 
"DEL PEAK  6(2Q37.2) WILD-TYPE" "DEL PEAK  6(2Q37.2) WILD-TYPE" 
                   TCGA-BR-6565                    TCGA-BR-6566 
  "DEL PEAK  6(2Q37.2) MUTATED" "DEL PEAK  6(2Q37.2) WILD-TYPE" 
                   TCGA-BR-6705                    TCGA-BR-6706 
"DEL PEAK  6(2Q37.2) WILD-TYPE" "DEL PEAK  6(2Q37.2) WILD-TYPE" 
                   TCGA-BR-6707                    TCGA-BR-6709 
"DEL PEAK  6(2Q37.2) WILD-TYPE"   "DEL PEAK  6(2Q37.2) MUTATED" 
                   TCGA-BR-6710                    TCGA-BR-6801 
"DEL PEAK  6(2Q37.2) WILD-TYPE" "DEL PEAK  6(2Q37.2) WILD-TYPE" 
                   TCGA-BR-6802                    TCGA-BR-6803 
"DEL PEAK  6(2Q37.2) WILD-TYPE" "DEL PEAK  6(2Q37.2) WILD-TYPE" 
                   TCGA-BR-6852                    TCGA-BR-7196 
"DEL PEAK  6(2Q37.2) WILD-TYPE" "DEL PEAK  6(2Q37.2) WILD-TYPE" 
                   TCGA-BR-7197                    TCGA-BR-7703 
"DEL PEAK  6(2Q37.2) WILD-TYPE" "DEL PEAK  6(2Q37.2) WILD-TYPE" 
                   TCGA-BR-7704                    TCGA-BR-7707 
  "DEL PEAK  6(2Q37.2) MUTATED" "DEL PEAK  6(2Q37.2) WILD-TYPE" 
                   TCGA-BR-7715                    TCGA-BR-7716 
"DEL PEAK  6(2Q37.2) WILD-TYPE" "DEL PEAK  6(2Q37.2) WILD-TYPE" 
                   TCGA-BR-7717                    TCGA-BR-7722 
"DEL PEAK  6(2Q37.2) WILD-TYPE" "DEL PEAK  6(2Q37.2) WILD-TYPE" 
                   TCGA-BR-7723                    TCGA-BR-7851 
"DEL PEAK  6(2Q37.2) WILD-TYPE" "DEL PEAK  6(2Q37.2) WILD-TYPE" 
                   TCGA-BR-7901                    TCGA-BR-7957 
  "DEL PEAK  6(2Q37.2) MUTATED" "DEL PEAK  6(2Q37.2) WILD-TYPE" 
                   TCGA-BR-7958                    TCGA-BR-7959 
"DEL PEAK  6(2Q37.2) WILD-TYPE" "DEL PEAK  6(2Q37.2) WILD-TYPE" 
                   TCGA-BR-8059                    TCGA-BR-8060 
"DEL PEAK  6(2Q37.2) WILD-TYPE" "DEL PEAK  6(2Q37.2) WILD-TYPE" 
                   TCGA-BR-8077                    TCGA-BR-8078 
"DEL PEAK  6(2Q37.2) WILD-TYPE" "DEL PEAK  6(2Q37.2) WILD-TYPE" 
                   TCGA-BR-8080                    TCGA-BR-8081 
"DEL PEAK  6(2Q37.2) WILD-TYPE" "DEL PEAK  6(2Q37.2) WILD-TYPE" 
                   TCGA-BR-8284                    TCGA-BR-8285 
"DEL PEAK  6(2Q37.2) WILD-TYPE" "DEL PEAK  6(2Q37.2) WILD-TYPE" 
                   TCGA-BR-8286                    TCGA-BR-8289 
"DEL PEAK  6(2Q37.2) WILD-TYPE" "DEL PEAK  6(2Q37.2) WILD-TYPE" 
                   TCGA-BR-8291                    TCGA-BR-8295 
"DEL PEAK  6(2Q37.2) WILD-TYPE" "DEL PEAK  6(2Q37.2) WILD-TYPE" 
                   TCGA-BR-8296                    TCGA-BR-8297 
"DEL PEAK  6(2Q37.2) WILD-TYPE" "DEL PEAK  6(2Q37.2) WILD-TYPE" 
                   TCGA-CD-5798                    TCGA-CD-5799 
"DEL PEAK  6(2Q37.2) WILD-TYPE" "DEL PEAK  6(2Q37.2) WILD-TYPE" 
                   TCGA-CD-5800                    TCGA-CD-5801 
  "DEL PEAK  6(2Q37.2) MUTATED" "DEL PEAK  6(2Q37.2) WILD-TYPE" 
                   TCGA-CD-5802                    TCGA-CD-5803 
"DEL PEAK  6(2Q37.2) WILD-TYPE" "DEL PEAK  6(2Q37.2) WILD-TYPE" 
                   TCGA-CG-4300                    TCGA-CG-4301 
  "DEL PEAK  6(2Q37.2) MUTATED" "DEL PEAK  6(2Q37.2) WILD-TYPE" 
                   TCGA-CG-4304                    TCGA-CG-4305 
"DEL PEAK  6(2Q37.2) WILD-TYPE" "DEL PEAK  6(2Q37.2) WILD-TYPE" 
                   TCGA-CG-4306                    TCGA-CG-4436 
"DEL PEAK  6(2Q37.2) WILD-TYPE" "DEL PEAK  6(2Q37.2) WILD-TYPE" 
                   TCGA-CG-4437                    TCGA-CG-4438 
  "DEL PEAK  6(2Q37.2) MUTATED" "DEL PEAK  6(2Q37.2) WILD-TYPE" 
                   TCGA-CG-4440                    TCGA-CG-4441 
"DEL PEAK  6(2Q37.2) WILD-TYPE"   "DEL PEAK  6(2Q37.2) MUTATED" 
                   TCGA-CG-4443                    TCGA-CG-4444 
"DEL PEAK  6(2Q37.2) WILD-TYPE" "DEL PEAK  6(2Q37.2) WILD-TYPE" 
                   TCGA-CG-4449                    TCGA-CG-4455 
  "DEL PEAK  6(2Q37.2) MUTATED" "DEL PEAK  6(2Q37.2) WILD-TYPE" 
                   TCGA-CG-4460                    TCGA-CG-4462 
"DEL PEAK  6(2Q37.2) WILD-TYPE" "DEL PEAK  6(2Q37.2) WILD-TYPE" 
                   TCGA-CG-4465                    TCGA-CG-4466 
"DEL PEAK  6(2Q37.2) WILD-TYPE"   "DEL PEAK  6(2Q37.2) MUTATED" 
                   TCGA-CG-4469                    TCGA-CG-4472 
"DEL PEAK  6(2Q37.2) WILD-TYPE"   "DEL PEAK  6(2Q37.2) MUTATED" 
                   TCGA-CG-4474                    TCGA-CG-4477 
"DEL PEAK  6(2Q37.2) WILD-TYPE" "DEL PEAK  6(2Q37.2) WILD-TYPE" 
                   TCGA-CG-5716                    TCGA-CG-5717 
"DEL PEAK  6(2Q37.2) WILD-TYPE" "DEL PEAK  6(2Q37.2) WILD-TYPE" 
                   TCGA-CG-5718                    TCGA-CG-5719 
"DEL PEAK  6(2Q37.2) WILD-TYPE"   "DEL PEAK  6(2Q37.2) MUTATED" 
                   TCGA-CG-5720                    TCGA-CG-5721 
"DEL PEAK  6(2Q37.2) WILD-TYPE" "DEL PEAK  6(2Q37.2) WILD-TYPE" 
                   TCGA-CG-5722                    TCGA-CG-5723 
"DEL PEAK  6(2Q37.2) WILD-TYPE" "DEL PEAK  6(2Q37.2) WILD-TYPE" 
                   TCGA-CG-5724                    TCGA-CG-5725 
"DEL PEAK  6(2Q37.2) WILD-TYPE" "DEL PEAK  6(2Q37.2) WILD-TYPE" 
                   TCGA-CG-5726                    TCGA-CG-5727 
"DEL PEAK  6(2Q37.2) WILD-TYPE" "DEL PEAK  6(2Q37.2) WILD-TYPE" 
                   TCGA-CG-5728                    TCGA-CG-5730 
"DEL PEAK  6(2Q37.2) WILD-TYPE" "DEL PEAK  6(2Q37.2) WILD-TYPE" 
                   TCGA-CG-5732                    TCGA-CG-5733 
"DEL PEAK  6(2Q37.2) WILD-TYPE" "DEL PEAK  6(2Q37.2) WILD-TYPE" 
                   TCGA-CG-5734                    TCGA-D7-5577 
"DEL PEAK  6(2Q37.2) WILD-TYPE" "DEL PEAK  6(2Q37.2) WILD-TYPE" 
                   TCGA-D7-5578                    TCGA-D7-5579 
  "DEL PEAK  6(2Q37.2) MUTATED" "DEL PEAK  6(2Q37.2) WILD-TYPE" 
                   TCGA-D7-6518                    TCGA-D7-6519 
"DEL PEAK  6(2Q37.2) WILD-TYPE"   "DEL PEAK  6(2Q37.2) MUTATED" 
                   TCGA-D7-6520                    TCGA-D7-6521 
"DEL PEAK  6(2Q37.2) WILD-TYPE" "DEL PEAK  6(2Q37.2) WILD-TYPE" 
                   TCGA-D7-6522                    TCGA-D7-6524 
"DEL PEAK  6(2Q37.2) WILD-TYPE" "DEL PEAK  6(2Q37.2) WILD-TYPE" 
                   TCGA-D7-6525                    TCGA-D7-6526 
"DEL PEAK  6(2Q37.2) WILD-TYPE" "DEL PEAK  6(2Q37.2) WILD-TYPE" 
                   TCGA-D7-6527                    TCGA-D7-6528 
"DEL PEAK  6(2Q37.2) WILD-TYPE"   "DEL PEAK  6(2Q37.2) MUTATED" 
                   TCGA-D7-6815                    TCGA-D7-6817 
  "DEL PEAK  6(2Q37.2) MUTATED" "DEL PEAK  6(2Q37.2) WILD-TYPE" 
                   TCGA-D7-6818                    TCGA-D7-6820 
"DEL PEAK  6(2Q37.2) WILD-TYPE" "DEL PEAK  6(2Q37.2) WILD-TYPE" 
                   TCGA-D7-6822                    TCGA-EQ-5647 
  "DEL PEAK  6(2Q37.2) MUTATED" "DEL PEAK  6(2Q37.2) WILD-TYPE" 
                   TCGA-EQ-8122                    TCGA-F1-6177 
  "DEL PEAK  6(2Q37.2) MUTATED" "DEL PEAK  6(2Q37.2) WILD-TYPE" 
                   TCGA-F1-6874                    TCGA-F1-6875 
"DEL PEAK  6(2Q37.2) WILD-TYPE" "DEL PEAK  6(2Q37.2) WILD-TYPE" 
                   TCGA-FP-7735                    TCGA-FP-7829 
"DEL PEAK  6(2Q37.2) WILD-TYPE" "DEL PEAK  6(2Q37.2) WILD-TYPE" 
                   TCGA-FP-7916                    TCGA-FP-7998 
"DEL PEAK  6(2Q37.2) WILD-TYPE" "DEL PEAK  6(2Q37.2) WILD-TYPE" 
                   TCGA-HJ-7597                    TCGA-IN-7806 
  "DEL PEAK  6(2Q37.2) MUTATED" "DEL PEAK  6(2Q37.2) WILD-TYPE" 
                   TCGA-IN-7808                    TCGA-IP-7968 
"DEL PEAK  6(2Q37.2) WILD-TYPE" "DEL PEAK  6(2Q37.2) WILD-TYPE" 
                   TCGA-B7-5816                    TCGA-B7-5818 
"DEL PEAK  6(2Q37.2) WILD-TYPE" "DEL PEAK  6(2Q37.2) WILD-TYPE" 
                   TCGA-BR-6452                    TCGA-BR-6455 
"DEL PEAK  6(2Q37.2) WILD-TYPE" "DEL PEAK  6(2Q37.2) WILD-TYPE" 
                   TCGA-BR-6457                    TCGA-BR-6458 
"DEL PEAK  6(2Q37.2) WILD-TYPE" "DEL PEAK  6(2Q37.2) WILD-TYPE" 
                   TCGA-BR-6563                    TCGA-BR-6564 
"DEL PEAK  6(2Q37.2) WILD-TYPE" "DEL PEAK  6(2Q37.2) WILD-TYPE" 
                   TCGA-BR-6565                    TCGA-BR-6566 
  "DEL PEAK  6(2Q37.2) MUTATED" "DEL PEAK  6(2Q37.2) WILD-TYPE" 
                   TCGA-BR-6705                    TCGA-BR-6706 
"DEL PEAK  6(2Q37.2) WILD-TYPE" "DEL PEAK  6(2Q37.2) WILD-TYPE" 
                   TCGA-BR-6707                    TCGA-BR-6709 
"DEL PEAK  6(2Q37.2) WILD-TYPE"   "DEL PEAK  6(2Q37.2) MUTATED" 
                   TCGA-BR-6710                    TCGA-BR-6801 
"DEL PEAK  6(2Q37.2) WILD-TYPE" "DEL PEAK  6(2Q37.2) WILD-TYPE" 
                   TCGA-BR-6802                    TCGA-BR-6803 
"DEL PEAK  6(2Q37.2) WILD-TYPE" "DEL PEAK  6(2Q37.2) WILD-TYPE" 
                   TCGA-BR-6852                    TCGA-BR-7196 
"DEL PEAK  6(2Q37.2) WILD-TYPE" "DEL PEAK  6(2Q37.2) WILD-TYPE" 
                   TCGA-BR-7197                    TCGA-BR-7703 
"DEL PEAK  6(2Q37.2) WILD-TYPE" "DEL PEAK  6(2Q37.2) WILD-TYPE" 
                   TCGA-BR-7704                    TCGA-BR-7707 
  "DEL PEAK  6(2Q37.2) MUTATED" "DEL PEAK  6(2Q37.2) WILD-TYPE" 
                   TCGA-BR-7715                    TCGA-BR-7716 
"DEL PEAK  6(2Q37.2) WILD-TYPE" "DEL PEAK  6(2Q37.2) WILD-TYPE" 
                   TCGA-BR-7717                    TCGA-BR-7722 
"DEL PEAK  6(2Q37.2) WILD-TYPE" "DEL PEAK  6(2Q37.2) WILD-TYPE" 
                   TCGA-BR-7723                    TCGA-BR-7851 
"DEL PEAK  6(2Q37.2) WILD-TYPE" "DEL PEAK  6(2Q37.2) WILD-TYPE" 
                   TCGA-BR-7901                    TCGA-BR-7957 
  "DEL PEAK  6(2Q37.2) MUTATED" "DEL PEAK  6(2Q37.2) WILD-TYPE" 
                   TCGA-BR-7958                    TCGA-BR-7959 
"DEL PEAK  6(2Q37.2) WILD-TYPE" "DEL PEAK  6(2Q37.2) WILD-TYPE" 
                   TCGA-BR-8059                    TCGA-BR-8060 
"DEL PEAK  6(2Q37.2) WILD-TYPE" "DEL PEAK  6(2Q37.2) WILD-TYPE" 
                   TCGA-BR-8077                    TCGA-BR-8078 
"DEL PEAK  6(2Q37.2) WILD-TYPE" "DEL PEAK  6(2Q37.2) WILD-TYPE" 
                   TCGA-BR-8080                    TCGA-BR-8081 
"DEL PEAK  6(2Q37.2) WILD-TYPE" "DEL PEAK  6(2Q37.2) WILD-TYPE" 
                   TCGA-BR-8284                    TCGA-BR-8285 
"DEL PEAK  6(2Q37.2) WILD-TYPE" "DEL PEAK  6(2Q37.2) WILD-TYPE" 
                   TCGA-BR-8286                    TCGA-BR-8289 
"DEL PEAK  6(2Q37.2) WILD-TYPE" "DEL PEAK  6(2Q37.2) WILD-TYPE" 
                   TCGA-BR-8291                    TCGA-BR-8295 
"DEL PEAK  6(2Q37.2) WILD-TYPE" "DEL PEAK  6(2Q37.2) WILD-TYPE" 
                   TCGA-BR-8296                    TCGA-BR-8297 
"DEL PEAK  6(2Q37.2) WILD-TYPE" "DEL PEAK  6(2Q37.2) WILD-TYPE" 
                   TCGA-CD-5798                    TCGA-CD-5799 
"DEL PEAK  6(2Q37.2) WILD-TYPE" "DEL PEAK  6(2Q37.2) WILD-TYPE" 
                   TCGA-CD-5800                    TCGA-CD-5801 
  "DEL PEAK  6(2Q37.2) MUTATED" "DEL PEAK  6(2Q37.2) WILD-TYPE" 
                   TCGA-CD-5802                    TCGA-CD-5803 
"DEL PEAK  6(2Q37.2) WILD-TYPE" "DEL PEAK  6(2Q37.2) WILD-TYPE" 
                   TCGA-CG-4300                    TCGA-CG-4301 
  "DEL PEAK  6(2Q37.2) MUTATED" "DEL PEAK  6(2Q37.2) WILD-TYPE" 
                   TCGA-CG-4304                    TCGA-CG-4305 
"DEL PEAK  6(2Q37.2) WILD-TYPE" "DEL PEAK  6(2Q37.2) WILD-TYPE" 
                   TCGA-CG-4306                    TCGA-CG-4436 
"DEL PEAK  6(2Q37.2) WILD-TYPE" "DEL PEAK  6(2Q37.2) WILD-TYPE" 
                   TCGA-CG-4437                    TCGA-CG-4438 
  "DEL PEAK  6(2Q37.2) MUTATED" "DEL PEAK  6(2Q37.2) WILD-TYPE" 
                   TCGA-CG-4440                    TCGA-CG-4441 
"DEL PEAK  6(2Q37.2) WILD-TYPE"   "DEL PEAK  6(2Q37.2) MUTATED" 
                   TCGA-CG-4443                    TCGA-CG-4444 
"DEL PEAK  6(2Q37.2) WILD-TYPE" "DEL PEAK  6(2Q37.2) WILD-TYPE" 
                   TCGA-CG-4449                    TCGA-CG-4455 
  "DEL PEAK  6(2Q37.2) MUTATED" "DEL PEAK  6(2Q37.2) WILD-TYPE" 
                   TCGA-CG-4460                    TCGA-CG-4462 
"DEL PEAK  6(2Q37.2) WILD-TYPE" "DEL PEAK  6(2Q37.2) WILD-TYPE" 
                   TCGA-CG-4465                    TCGA-CG-4466 
"DEL PEAK  6(2Q37.2) WILD-TYPE"   "DEL PEAK  6(2Q37.2) MUTATED" 
                   TCGA-CG-4469                    TCGA-CG-4472 
"DEL PEAK  6(2Q37.2) WILD-TYPE"   "DEL PEAK  6(2Q37.2) MUTATED" 
                   TCGA-CG-4474                    TCGA-CG-4477 
"DEL PEAK  6(2Q37.2) WILD-TYPE" "DEL PEAK  6(2Q37.2) WILD-TYPE" 
                   TCGA-CG-5716                    TCGA-CG-5717 
"DEL PEAK  6(2Q37.2) WILD-TYPE" "DEL PEAK  6(2Q37.2) WILD-TYPE" 
                   TCGA-CG-5718                    TCGA-CG-5719 
"DEL PEAK  6(2Q37.2) WILD-TYPE"   "DEL PEAK  6(2Q37.2) MUTATED" 
                   TCGA-CG-5720                    TCGA-CG-5721 
"DEL PEAK  6(2Q37.2) WILD-TYPE" "DEL PEAK  6(2Q37.2) WILD-TYPE" 
                   TCGA-CG-5722                    TCGA-CG-5723 
"DEL PEAK  6(2Q37.2) WILD-TYPE" "DEL PEAK  6(2Q37.2) WILD-TYPE" 
                   TCGA-CG-5724                    TCGA-CG-5725 
"DEL PEAK  6(2Q37.2) WILD-TYPE" "DEL PEAK  6(2Q37.2) WILD-TYPE" 
                   TCGA-CG-5726                    TCGA-CG-5727 
"DEL PEAK  6(2Q37.2) WILD-TYPE" "DEL PEAK  6(2Q37.2) WILD-TYPE" 
                   TCGA-CG-5728                    TCGA-CG-5730 
"DEL PEAK  6(2Q37.2) WILD-TYPE" "DEL PEAK  6(2Q37.2) WILD-TYPE" 
                   TCGA-CG-5732                    TCGA-CG-5733 
"DEL PEAK  6(2Q37.2) WILD-TYPE" "DEL PEAK  6(2Q37.2) WILD-TYPE" 
                   TCGA-CG-5734                    TCGA-D7-5577 
"DEL PEAK  6(2Q37.2) WILD-TYPE" "DEL PEAK  6(2Q37.2) WILD-TYPE" 
                   TCGA-D7-5578                    TCGA-D7-5579 
  "DEL PEAK  6(2Q37.2) MUTATED" "DEL PEAK  6(2Q37.2) WILD-TYPE" 
                   TCGA-D7-6518                    TCGA-D7-6519 
"DEL PEAK  6(2Q37.2) WILD-TYPE"   "DEL PEAK  6(2Q37.2) MUTATED" 
                   TCGA-D7-6520                    TCGA-D7-6521 
"DEL PEAK  6(2Q37.2) WILD-TYPE" "DEL PEAK  6(2Q37.2) WILD-TYPE" 
                   TCGA-D7-6522                    TCGA-D7-6524 
"DEL PEAK  6(2Q37.2) WILD-TYPE" "DEL PEAK  6(2Q37.2) WILD-TYPE" 
                   TCGA-D7-6525                    TCGA-D7-6526 
"DEL PEAK  6(2Q37.2) WILD-TYPE" "DEL PEAK  6(2Q37.2) WILD-TYPE" 
                   TCGA-D7-6527                    TCGA-D7-6528 
"DEL PEAK  6(2Q37.2) WILD-TYPE"   "DEL PEAK  6(2Q37.2) MUTATED" 
                   TCGA-D7-6815                    TCGA-D7-6817 
  "DEL PEAK  6(2Q37.2) MUTATED" "DEL PEAK  6(2Q37.2) WILD-TYPE" 
                   TCGA-D7-6818                    TCGA-D7-6820 
"DEL PEAK  6(2Q37.2) WILD-TYPE" "DEL PEAK  6(2Q37.2) WILD-TYPE" 
                   TCGA-D7-6822                    TCGA-EQ-5647 
  "DEL PEAK  6(2Q37.2) MUTATED" "DEL PEAK  6(2Q37.2) WILD-TYPE" 
                   TCGA-EQ-8122                    TCGA-F1-6177 
  "DEL PEAK  6(2Q37.2) MUTATED" "DEL PEAK  6(2Q37.2) WILD-TYPE" 
                   TCGA-F1-6874                    TCGA-F1-6875 
"DEL PEAK  6(2Q37.2) WILD-TYPE" "DEL PEAK  6(2Q37.2) WILD-TYPE" 
                   TCGA-FP-7735                    TCGA-FP-7829 
"DEL PEAK  6(2Q37.2) WILD-TYPE" "DEL PEAK  6(2Q37.2) WILD-TYPE" 
                   TCGA-FP-7916                    TCGA-FP-7998 
"DEL PEAK  6(2Q37.2) WILD-TYPE" "DEL PEAK  6(2Q37.2) WILD-TYPE" 
                   TCGA-HJ-7597                    TCGA-IN-7806 
  "DEL PEAK  6(2Q37.2) MUTATED" "DEL PEAK  6(2Q37.2) WILD-TYPE" 
                   TCGA-IN-7808                    TCGA-IP-7968 
"DEL PEAK  6(2Q37.2) WILD-TYPE" "DEL PEAK  6(2Q37.2) WILD-TYPE" 
[1] "hr=" "1.5"
D32V2, continuous
D32V3, binary
[1] "tbl2"
                               cls
clus                            [,1] [,2]
  DEL PEAK  6(2Q37.2) MUTATED     11   11
  DEL PEAK  6(2Q37.2) WILD-TYPE   54   85
        clus
vv       DEL PEAK  6(2Q37.2) MUTATED DEL PEAK  6(2Q37.2) WILD-TYPE
  FEMALE                          11                            54
  MALE                            11                            85
D32V4, multiclass
D32V5, multiclass
    clus
vv   DEL PEAK  6(2Q37.2) MUTATED DEL PEAK  6(2Q37.2) WILD-TYPE
  T1                           1                             5
  T2                          10                            43
  T3                           8                            51
  T4                           3                            30
D32V6, multiclass
    clus
vv   DEL PEAK  6(2Q37.2) MUTATED DEL PEAK  6(2Q37.2) WILD-TYPE
  N0                          10                            40
  N1                           6                            51
  N2                           5                            19
  N3                           1                            18
D32V7, multiclass
    clus
vv   DEL PEAK  6(2Q37.2) MUTATED DEL PEAK  6(2Q37.2) WILD-TYPE
  M0                          18                           114
  M1                           1                            17
  MX                           3                             8
D32V8, multiclass
     clus
vv    DEL PEAK  6(2Q37.2) MUTATED DEL PEAK  6(2Q37.2) WILD-TYPE
  I                             6                            19
  II                            7                            36
  III                           7                            41
  IV                            2                            27
D32V9, binary
[1] "tbl2"
                               cls
clus                            [,1] [,2]
  DEL PEAK  6(2Q37.2) MUTATED     21    1
  DEL PEAK  6(2Q37.2) WILD-TYPE  135    4
     clus
vv    DEL PEAK  6(2Q37.2) MUTATED DEL PEAK  6(2Q37.2) WILD-TYPE
  NO                            1                             4
  YES                          21                           135

Clustering(33) Variable = Del Peak  7(3p26.1) mutation analysis
D33V1, survival
                   TCGA-B7-5816                    TCGA-B7-5818 
"DEL PEAK  7(3P26.1) WILD-TYPE" "DEL PEAK  7(3P26.1) WILD-TYPE" 
                   TCGA-BR-6452                    TCGA-BR-6455 
"DEL PEAK  7(3P26.1) WILD-TYPE" "DEL PEAK  7(3P26.1) WILD-TYPE" 
                   TCGA-BR-6457                    TCGA-BR-6458 
"DEL PEAK  7(3P26.1) WILD-TYPE"   "DEL PEAK  7(3P26.1) MUTATED" 
                   TCGA-BR-6563                    TCGA-BR-6564 
"DEL PEAK  7(3P26.1) WILD-TYPE" "DEL PEAK  7(3P26.1) WILD-TYPE" 
                   TCGA-BR-6565                    TCGA-BR-6566 
  "DEL PEAK  7(3P26.1) MUTATED" "DEL PEAK  7(3P26.1) WILD-TYPE" 
                   TCGA-BR-6705                    TCGA-BR-6706 
  "DEL PEAK  7(3P26.1) MUTATED" "DEL PEAK  7(3P26.1) WILD-TYPE" 
                   TCGA-BR-6707                    TCGA-BR-6709 
"DEL PEAK  7(3P26.1) WILD-TYPE" "DEL PEAK  7(3P26.1) WILD-TYPE" 
                   TCGA-BR-6710                    TCGA-BR-6801 
"DEL PEAK  7(3P26.1) WILD-TYPE" "DEL PEAK  7(3P26.1) WILD-TYPE" 
                   TCGA-BR-6802                    TCGA-BR-6803 
"DEL PEAK  7(3P26.1) WILD-TYPE"   "DEL PEAK  7(3P26.1) MUTATED" 
                   TCGA-BR-6852                    TCGA-BR-7196 
"DEL PEAK  7(3P26.1) WILD-TYPE" "DEL PEAK  7(3P26.1) WILD-TYPE" 
                   TCGA-BR-7197                    TCGA-BR-7703 
"DEL PEAK  7(3P26.1) WILD-TYPE" "DEL PEAK  7(3P26.1) WILD-TYPE" 
                   TCGA-BR-7704                    TCGA-BR-7707 
"DEL PEAK  7(3P26.1) WILD-TYPE" "DEL PEAK  7(3P26.1) WILD-TYPE" 
                   TCGA-BR-7715                    TCGA-BR-7716 
  "DEL PEAK  7(3P26.1) MUTATED"   "DEL PEAK  7(3P26.1) MUTATED" 
                   TCGA-BR-7717                    TCGA-BR-7722 
"DEL PEAK  7(3P26.1) WILD-TYPE" "DEL PEAK  7(3P26.1) WILD-TYPE" 
                   TCGA-BR-7723                    TCGA-BR-7851 
"DEL PEAK  7(3P26.1) WILD-TYPE" "DEL PEAK  7(3P26.1) WILD-TYPE" 
                   TCGA-BR-7901                    TCGA-BR-7957 
"DEL PEAK  7(3P26.1) WILD-TYPE"   "DEL PEAK  7(3P26.1) MUTATED" 
                   TCGA-BR-7958                    TCGA-BR-7959 
"DEL PEAK  7(3P26.1) WILD-TYPE" "DEL PEAK  7(3P26.1) WILD-TYPE" 
                   TCGA-BR-8059                    TCGA-BR-8060 
"DEL PEAK  7(3P26.1) WILD-TYPE" "DEL PEAK  7(3P26.1) WILD-TYPE" 
                   TCGA-BR-8077                    TCGA-BR-8078 
"DEL PEAK  7(3P26.1) WILD-TYPE" "DEL PEAK  7(3P26.1) WILD-TYPE" 
                   TCGA-BR-8080                    TCGA-BR-8081 
"DEL PEAK  7(3P26.1) WILD-TYPE" "DEL PEAK  7(3P26.1) WILD-TYPE" 
                   TCGA-BR-8284                    TCGA-BR-8285 
"DEL PEAK  7(3P26.1) WILD-TYPE" "DEL PEAK  7(3P26.1) WILD-TYPE" 
                   TCGA-BR-8286                    TCGA-BR-8289 
"DEL PEAK  7(3P26.1) WILD-TYPE" "DEL PEAK  7(3P26.1) WILD-TYPE" 
                   TCGA-BR-8291                    TCGA-BR-8295 
"DEL PEAK  7(3P26.1) WILD-TYPE" "DEL PEAK  7(3P26.1) WILD-TYPE" 
                   TCGA-BR-8296                    TCGA-BR-8297 
"DEL PEAK  7(3P26.1) WILD-TYPE" "DEL PEAK  7(3P26.1) WILD-TYPE" 
                   TCGA-CD-5798                    TCGA-CD-5799 
"DEL PEAK  7(3P26.1) WILD-TYPE"   "DEL PEAK  7(3P26.1) MUTATED" 
                   TCGA-CD-5800                    TCGA-CD-5801 
  "DEL PEAK  7(3P26.1) MUTATED"   "DEL PEAK  7(3P26.1) MUTATED" 
                   TCGA-CD-5802                    TCGA-CD-5803 
"DEL PEAK  7(3P26.1) WILD-TYPE" "DEL PEAK  7(3P26.1) WILD-TYPE" 
                   TCGA-CG-4300                    TCGA-CG-4301 
  "DEL PEAK  7(3P26.1) MUTATED"   "DEL PEAK  7(3P26.1) MUTATED" 
                   TCGA-CG-4304                    TCGA-CG-4305 
"DEL PEAK  7(3P26.1) WILD-TYPE" "DEL PEAK  7(3P26.1) WILD-TYPE" 
                   TCGA-CG-4306                    TCGA-CG-4436 
"DEL PEAK  7(3P26.1) WILD-TYPE"   "DEL PEAK  7(3P26.1) MUTATED" 
                   TCGA-CG-4437                    TCGA-CG-4438 
  "DEL PEAK  7(3P26.1) MUTATED"   "DEL PEAK  7(3P26.1) MUTATED" 
                   TCGA-CG-4440                    TCGA-CG-4441 
  "DEL PEAK  7(3P26.1) MUTATED" "DEL PEAK  7(3P26.1) WILD-TYPE" 
                   TCGA-CG-4443                    TCGA-CG-4444 
"DEL PEAK  7(3P26.1) WILD-TYPE"   "DEL PEAK  7(3P26.1) MUTATED" 
                   TCGA-CG-4449                    TCGA-CG-4455 
"DEL PEAK  7(3P26.1) WILD-TYPE"   "DEL PEAK  7(3P26.1) MUTATED" 
                   TCGA-CG-4460                    TCGA-CG-4462 
"DEL PEAK  7(3P26.1) WILD-TYPE" "DEL PEAK  7(3P26.1) WILD-TYPE" 
                   TCGA-CG-4465                    TCGA-CG-4466 
"DEL PEAK  7(3P26.1) WILD-TYPE"   "DEL PEAK  7(3P26.1) MUTATED" 
                   TCGA-CG-4469                    TCGA-CG-4472 
"DEL PEAK  7(3P26.1) WILD-TYPE" "DEL PEAK  7(3P26.1) WILD-TYPE" 
                   TCGA-CG-4474                    TCGA-CG-4477 
"DEL PEAK  7(3P26.1) WILD-TYPE" "DEL PEAK  7(3P26.1) WILD-TYPE" 
                   TCGA-CG-5716                    TCGA-CG-5717 
"DEL PEAK  7(3P26.1) WILD-TYPE" "DEL PEAK  7(3P26.1) WILD-TYPE" 
                   TCGA-CG-5718                    TCGA-CG-5719 
  "DEL PEAK  7(3P26.1) MUTATED" "DEL PEAK  7(3P26.1) WILD-TYPE" 
                   TCGA-CG-5720                    TCGA-CG-5721 
"DEL PEAK  7(3P26.1) WILD-TYPE" "DEL PEAK  7(3P26.1) WILD-TYPE" 
                   TCGA-CG-5722                    TCGA-CG-5723 
"DEL PEAK  7(3P26.1) WILD-TYPE" "DEL PEAK  7(3P26.1) WILD-TYPE" 
                   TCGA-CG-5724                    TCGA-CG-5725 
"DEL PEAK  7(3P26.1) WILD-TYPE"   "DEL PEAK  7(3P26.1) MUTATED" 
                   TCGA-CG-5726                    TCGA-CG-5727 
"DEL PEAK  7(3P26.1) WILD-TYPE" "DEL PEAK  7(3P26.1) WILD-TYPE" 
                   TCGA-CG-5728                    TCGA-CG-5730 
"DEL PEAK  7(3P26.1) WILD-TYPE"   "DEL PEAK  7(3P26.1) MUTATED" 
                   TCGA-CG-5732                    TCGA-CG-5733 
"DEL PEAK  7(3P26.1) WILD-TYPE" "DEL PEAK  7(3P26.1) WILD-TYPE" 
                   TCGA-CG-5734                    TCGA-D7-5577 
"DEL PEAK  7(3P26.1) WILD-TYPE" "DEL PEAK  7(3P26.1) WILD-TYPE" 
                   TCGA-D7-5578                    TCGA-D7-5579 
  "DEL PEAK  7(3P26.1) MUTATED" "DEL PEAK  7(3P26.1) WILD-TYPE" 
                   TCGA-D7-6518                    TCGA-D7-6519 
"DEL PEAK  7(3P26.1) WILD-TYPE" "DEL PEAK  7(3P26.1) WILD-TYPE" 
                   TCGA-D7-6520                    TCGA-D7-6521 
"DEL PEAK  7(3P26.1) WILD-TYPE" "DEL PEAK  7(3P26.1) WILD-TYPE" 
                   TCGA-D7-6522                    TCGA-D7-6524 
"DEL PEAK  7(3P26.1) WILD-TYPE" "DEL PEAK  7(3P26.1) WILD-TYPE" 
                   TCGA-D7-6525                    TCGA-D7-6526 
  "DEL PEAK  7(3P26.1) MUTATED"   "DEL PEAK  7(3P26.1) MUTATED" 
                   TCGA-D7-6527                    TCGA-D7-6528 
"DEL PEAK  7(3P26.1) WILD-TYPE"   "DEL PEAK  7(3P26.1) MUTATED" 
                   TCGA-D7-6815                    TCGA-D7-6817 
"DEL PEAK  7(3P26.1) WILD-TYPE"   "DEL PEAK  7(3P26.1) MUTATED" 
                   TCGA-D7-6818                    TCGA-D7-6820 
"DEL PEAK  7(3P26.1) WILD-TYPE" "DEL PEAK  7(3P26.1) WILD-TYPE" 
                   TCGA-D7-6822                    TCGA-EQ-5647 
"DEL PEAK  7(3P26.1) WILD-TYPE"   "DEL PEAK  7(3P26.1) MUTATED" 
                   TCGA-EQ-8122                    TCGA-F1-6177 
"DEL PEAK  7(3P26.1) WILD-TYPE" "DEL PEAK  7(3P26.1) WILD-TYPE" 
                   TCGA-F1-6874                    TCGA-F1-6875 
"DEL PEAK  7(3P26.1) WILD-TYPE" "DEL PEAK  7(3P26.1) WILD-TYPE" 
                   TCGA-FP-7735                    TCGA-FP-7829 
"DEL PEAK  7(3P26.1) WILD-TYPE"   "DEL PEAK  7(3P26.1) MUTATED" 
                   TCGA-FP-7916                    TCGA-FP-7998 
  "DEL PEAK  7(3P26.1) MUTATED" "DEL PEAK  7(3P26.1) WILD-TYPE" 
                   TCGA-HJ-7597                    TCGA-IN-7806 
"DEL PEAK  7(3P26.1) WILD-TYPE"   "DEL PEAK  7(3P26.1) MUTATED" 
                   TCGA-IN-7808                    TCGA-IP-7968 
"DEL PEAK  7(3P26.1) WILD-TYPE" "DEL PEAK  7(3P26.1) WILD-TYPE" 
                   TCGA-B7-5816                    TCGA-B7-5818 
"DEL PEAK  7(3P26.1) WILD-TYPE" "DEL PEAK  7(3P26.1) WILD-TYPE" 
                   TCGA-BR-6452                    TCGA-BR-6455 
"DEL PEAK  7(3P26.1) WILD-TYPE" "DEL PEAK  7(3P26.1) WILD-TYPE" 
                   TCGA-BR-6457                    TCGA-BR-6458 
"DEL PEAK  7(3P26.1) WILD-TYPE"   "DEL PEAK  7(3P26.1) MUTATED" 
                   TCGA-BR-6563                    TCGA-BR-6564 
"DEL PEAK  7(3P26.1) WILD-TYPE" "DEL PEAK  7(3P26.1) WILD-TYPE" 
                   TCGA-BR-6565                    TCGA-BR-6566 
  "DEL PEAK  7(3P26.1) MUTATED" "DEL PEAK  7(3P26.1) WILD-TYPE" 
                   TCGA-BR-6705                    TCGA-BR-6706 
  "DEL PEAK  7(3P26.1) MUTATED" "DEL PEAK  7(3P26.1) WILD-TYPE" 
                   TCGA-BR-6707                    TCGA-BR-6709 
"DEL PEAK  7(3P26.1) WILD-TYPE" "DEL PEAK  7(3P26.1) WILD-TYPE" 
                   TCGA-BR-6710                    TCGA-BR-6801 
"DEL PEAK  7(3P26.1) WILD-TYPE" "DEL PEAK  7(3P26.1) WILD-TYPE" 
                   TCGA-BR-6802                    TCGA-BR-6803 
"DEL PEAK  7(3P26.1) WILD-TYPE"   "DEL PEAK  7(3P26.1) MUTATED" 
                   TCGA-BR-6852                    TCGA-BR-7196 
"DEL PEAK  7(3P26.1) WILD-TYPE" "DEL PEAK  7(3P26.1) WILD-TYPE" 
                   TCGA-BR-7197                    TCGA-BR-7703 
"DEL PEAK  7(3P26.1) WILD-TYPE" "DEL PEAK  7(3P26.1) WILD-TYPE" 
                   TCGA-BR-7704                    TCGA-BR-7707 
"DEL PEAK  7(3P26.1) WILD-TYPE" "DEL PEAK  7(3P26.1) WILD-TYPE" 
                   TCGA-BR-7715                    TCGA-BR-7716 
  "DEL PEAK  7(3P26.1) MUTATED"   "DEL PEAK  7(3P26.1) MUTATED" 
                   TCGA-BR-7717                    TCGA-BR-7722 
"DEL PEAK  7(3P26.1) WILD-TYPE" "DEL PEAK  7(3P26.1) WILD-TYPE" 
                   TCGA-BR-7723                    TCGA-BR-7851 
"DEL PEAK  7(3P26.1) WILD-TYPE" "DEL PEAK  7(3P26.1) WILD-TYPE" 
                   TCGA-BR-7901                    TCGA-BR-7957 
"DEL PEAK  7(3P26.1) WILD-TYPE"   "DEL PEAK  7(3P26.1) MUTATED" 
                   TCGA-BR-7958                    TCGA-BR-7959 
"DEL PEAK  7(3P26.1) WILD-TYPE" "DEL PEAK  7(3P26.1) WILD-TYPE" 
                   TCGA-BR-8059                    TCGA-BR-8060 
"DEL PEAK  7(3P26.1) WILD-TYPE" "DEL PEAK  7(3P26.1) WILD-TYPE" 
                   TCGA-BR-8077                    TCGA-BR-8078 
"DEL PEAK  7(3P26.1) WILD-TYPE" "DEL PEAK  7(3P26.1) WILD-TYPE" 
                   TCGA-BR-8080                    TCGA-BR-8081 
"DEL PEAK  7(3P26.1) WILD-TYPE" "DEL PEAK  7(3P26.1) WILD-TYPE" 
                   TCGA-BR-8284                    TCGA-BR-8285 
"DEL PEAK  7(3P26.1) WILD-TYPE" "DEL PEAK  7(3P26.1) WILD-TYPE" 
                   TCGA-BR-8286                    TCGA-BR-8289 
"DEL PEAK  7(3P26.1) WILD-TYPE" "DEL PEAK  7(3P26.1) WILD-TYPE" 
                   TCGA-BR-8291                    TCGA-BR-8295 
"DEL PEAK  7(3P26.1) WILD-TYPE" "DEL PEAK  7(3P26.1) WILD-TYPE" 
                   TCGA-BR-8296                    TCGA-BR-8297 
"DEL PEAK  7(3P26.1) WILD-TYPE" "DEL PEAK  7(3P26.1) WILD-TYPE" 
                   TCGA-CD-5798                    TCGA-CD-5799 
"DEL PEAK  7(3P26.1) WILD-TYPE"   "DEL PEAK  7(3P26.1) MUTATED" 
                   TCGA-CD-5800                    TCGA-CD-5801 
  "DEL PEAK  7(3P26.1) MUTATED"   "DEL PEAK  7(3P26.1) MUTATED" 
                   TCGA-CD-5802                    TCGA-CD-5803 
"DEL PEAK  7(3P26.1) WILD-TYPE" "DEL PEAK  7(3P26.1) WILD-TYPE" 
                   TCGA-CG-4300                    TCGA-CG-4301 
  "DEL PEAK  7(3P26.1) MUTATED"   "DEL PEAK  7(3P26.1) MUTATED" 
                   TCGA-CG-4304                    TCGA-CG-4305 
"DEL PEAK  7(3P26.1) WILD-TYPE" "DEL PEAK  7(3P26.1) WILD-TYPE" 
                   TCGA-CG-4306                    TCGA-CG-4436 
"DEL PEAK  7(3P26.1) WILD-TYPE"   "DEL PEAK  7(3P26.1) MUTATED" 
                   TCGA-CG-4437                    TCGA-CG-4438 
  "DEL PEAK  7(3P26.1) MUTATED"   "DEL PEAK  7(3P26.1) MUTATED" 
                   TCGA-CG-4440                    TCGA-CG-4441 
  "DEL PEAK  7(3P26.1) MUTATED" "DEL PEAK  7(3P26.1) WILD-TYPE" 
                   TCGA-CG-4443                    TCGA-CG-4444 
"DEL PEAK  7(3P26.1) WILD-TYPE"   "DEL PEAK  7(3P26.1) MUTATED" 
                   TCGA-CG-4449                    TCGA-CG-4455 
"DEL PEAK  7(3P26.1) WILD-TYPE"   "DEL PEAK  7(3P26.1) MUTATED" 
                   TCGA-CG-4460                    TCGA-CG-4462 
"DEL PEAK  7(3P26.1) WILD-TYPE" "DEL PEAK  7(3P26.1) WILD-TYPE" 
                   TCGA-CG-4465                    TCGA-CG-4466 
"DEL PEAK  7(3P26.1) WILD-TYPE"   "DEL PEAK  7(3P26.1) MUTATED" 
                   TCGA-CG-4469                    TCGA-CG-4472 
"DEL PEAK  7(3P26.1) WILD-TYPE" "DEL PEAK  7(3P26.1) WILD-TYPE" 
                   TCGA-CG-4474                    TCGA-CG-4477 
"DEL PEAK  7(3P26.1) WILD-TYPE" "DEL PEAK  7(3P26.1) WILD-TYPE" 
                   TCGA-CG-5716                    TCGA-CG-5717 
"DEL PEAK  7(3P26.1) WILD-TYPE" "DEL PEAK  7(3P26.1) WILD-TYPE" 
                   TCGA-CG-5718                    TCGA-CG-5719 
  "DEL PEAK  7(3P26.1) MUTATED" "DEL PEAK  7(3P26.1) WILD-TYPE" 
                   TCGA-CG-5720                    TCGA-CG-5721 
"DEL PEAK  7(3P26.1) WILD-TYPE" "DEL PEAK  7(3P26.1) WILD-TYPE" 
                   TCGA-CG-5722                    TCGA-CG-5723 
"DEL PEAK  7(3P26.1) WILD-TYPE" "DEL PEAK  7(3P26.1) WILD-TYPE" 
                   TCGA-CG-5724                    TCGA-CG-5725 
"DEL PEAK  7(3P26.1) WILD-TYPE"   "DEL PEAK  7(3P26.1) MUTATED" 
                   TCGA-CG-5726                    TCGA-CG-5727 
"DEL PEAK  7(3P26.1) WILD-TYPE" "DEL PEAK  7(3P26.1) WILD-TYPE" 
                   TCGA-CG-5728                    TCGA-CG-5730 
"DEL PEAK  7(3P26.1) WILD-TYPE"   "DEL PEAK  7(3P26.1) MUTATED" 
                   TCGA-CG-5732                    TCGA-CG-5733 
"DEL PEAK  7(3P26.1) WILD-TYPE" "DEL PEAK  7(3P26.1) WILD-TYPE" 
                   TCGA-CG-5734                    TCGA-D7-5577 
"DEL PEAK  7(3P26.1) WILD-TYPE" "DEL PEAK  7(3P26.1) WILD-TYPE" 
                   TCGA-D7-5578                    TCGA-D7-5579 
  "DEL PEAK  7(3P26.1) MUTATED" "DEL PEAK  7(3P26.1) WILD-TYPE" 
                   TCGA-D7-6518                    TCGA-D7-6519 
"DEL PEAK  7(3P26.1) WILD-TYPE" "DEL PEAK  7(3P26.1) WILD-TYPE" 
                   TCGA-D7-6520                    TCGA-D7-6521 
"DEL PEAK  7(3P26.1) WILD-TYPE" "DEL PEAK  7(3P26.1) WILD-TYPE" 
                   TCGA-D7-6522                    TCGA-D7-6524 
"DEL PEAK  7(3P26.1) WILD-TYPE" "DEL PEAK  7(3P26.1) WILD-TYPE" 
                   TCGA-D7-6525                    TCGA-D7-6526 
  "DEL PEAK  7(3P26.1) MUTATED"   "DEL PEAK  7(3P26.1) MUTATED" 
                   TCGA-D7-6527                    TCGA-D7-6528 
"DEL PEAK  7(3P26.1) WILD-TYPE"   "DEL PEAK  7(3P26.1) MUTATED" 
                   TCGA-D7-6815                    TCGA-D7-6817 
"DEL PEAK  7(3P26.1) WILD-TYPE"   "DEL PEAK  7(3P26.1) MUTATED" 
                   TCGA-D7-6818                    TCGA-D7-6820 
"DEL PEAK  7(3P26.1) WILD-TYPE" "DEL PEAK  7(3P26.1) WILD-TYPE" 
                   TCGA-D7-6822                    TCGA-EQ-5647 
"DEL PEAK  7(3P26.1) WILD-TYPE"   "DEL PEAK  7(3P26.1) MUTATED" 
                   TCGA-EQ-8122                    TCGA-F1-6177 
"DEL PEAK  7(3P26.1) WILD-TYPE" "DEL PEAK  7(3P26.1) WILD-TYPE" 
                   TCGA-F1-6874                    TCGA-F1-6875 
"DEL PEAK  7(3P26.1) WILD-TYPE" "DEL PEAK  7(3P26.1) WILD-TYPE" 
                   TCGA-FP-7735                    TCGA-FP-7829 
"DEL PEAK  7(3P26.1) WILD-TYPE"   "DEL PEAK  7(3P26.1) MUTATED" 
                   TCGA-FP-7916                    TCGA-FP-7998 
  "DEL PEAK  7(3P26.1) MUTATED" "DEL PEAK  7(3P26.1) WILD-TYPE" 
                   TCGA-HJ-7597                    TCGA-IN-7806 
"DEL PEAK  7(3P26.1) WILD-TYPE"   "DEL PEAK  7(3P26.1) MUTATED" 
                   TCGA-IN-7808                    TCGA-IP-7968 
"DEL PEAK  7(3P26.1) WILD-TYPE" "DEL PEAK  7(3P26.1) WILD-TYPE" 
                   TCGA-B7-5816                    TCGA-B7-5818 
"DEL PEAK  7(3P26.1) WILD-TYPE" "DEL PEAK  7(3P26.1) WILD-TYPE" 
                   TCGA-BR-6452                    TCGA-BR-6455 
"DEL PEAK  7(3P26.1) WILD-TYPE" "DEL PEAK  7(3P26.1) WILD-TYPE" 
                   TCGA-BR-6457                    TCGA-BR-6458 
"DEL PEAK  7(3P26.1) WILD-TYPE"   "DEL PEAK  7(3P26.1) MUTATED" 
                   TCGA-BR-6563                    TCGA-BR-6564 
"DEL PEAK  7(3P26.1) WILD-TYPE" "DEL PEAK  7(3P26.1) WILD-TYPE" 
                   TCGA-BR-6565                    TCGA-BR-6566 
  "DEL PEAK  7(3P26.1) MUTATED" "DEL PEAK  7(3P26.1) WILD-TYPE" 
                   TCGA-BR-6705                    TCGA-BR-6706 
  "DEL PEAK  7(3P26.1) MUTATED" "DEL PEAK  7(3P26.1) WILD-TYPE" 
                   TCGA-BR-6707                    TCGA-BR-6709 
"DEL PEAK  7(3P26.1) WILD-TYPE" "DEL PEAK  7(3P26.1) WILD-TYPE" 
                   TCGA-BR-6710                    TCGA-BR-6801 
"DEL PEAK  7(3P26.1) WILD-TYPE" "DEL PEAK  7(3P26.1) WILD-TYPE" 
                   TCGA-BR-6802                    TCGA-BR-6803 
"DEL PEAK  7(3P26.1) WILD-TYPE"   "DEL PEAK  7(3P26.1) MUTATED" 
                   TCGA-BR-6852                    TCGA-BR-7196 
"DEL PEAK  7(3P26.1) WILD-TYPE" "DEL PEAK  7(3P26.1) WILD-TYPE" 
                   TCGA-BR-7197                    TCGA-BR-7703 
"DEL PEAK  7(3P26.1) WILD-TYPE" "DEL PEAK  7(3P26.1) WILD-TYPE" 
                   TCGA-BR-7704                    TCGA-BR-7707 
"DEL PEAK  7(3P26.1) WILD-TYPE" "DEL PEAK  7(3P26.1) WILD-TYPE" 
                   TCGA-BR-7715                    TCGA-BR-7716 
  "DEL PEAK  7(3P26.1) MUTATED"   "DEL PEAK  7(3P26.1) MUTATED" 
                   TCGA-BR-7717                    TCGA-BR-7722 
"DEL PEAK  7(3P26.1) WILD-TYPE" "DEL PEAK  7(3P26.1) WILD-TYPE" 
                   TCGA-BR-7723                    TCGA-BR-7851 
"DEL PEAK  7(3P26.1) WILD-TYPE" "DEL PEAK  7(3P26.1) WILD-TYPE" 
                   TCGA-BR-7901                    TCGA-BR-7957 
"DEL PEAK  7(3P26.1) WILD-TYPE"   "DEL PEAK  7(3P26.1) MUTATED" 
                   TCGA-BR-7958                    TCGA-BR-7959 
"DEL PEAK  7(3P26.1) WILD-TYPE" "DEL PEAK  7(3P26.1) WILD-TYPE" 
                   TCGA-BR-8059                    TCGA-BR-8060 
"DEL PEAK  7(3P26.1) WILD-TYPE" "DEL PEAK  7(3P26.1) WILD-TYPE" 
                   TCGA-BR-8077                    TCGA-BR-8078 
"DEL PEAK  7(3P26.1) WILD-TYPE" "DEL PEAK  7(3P26.1) WILD-TYPE" 
                   TCGA-BR-8080                    TCGA-BR-8081 
"DEL PEAK  7(3P26.1) WILD-TYPE" "DEL PEAK  7(3P26.1) WILD-TYPE" 
                   TCGA-BR-8284                    TCGA-BR-8285 
"DEL PEAK  7(3P26.1) WILD-TYPE" "DEL PEAK  7(3P26.1) WILD-TYPE" 
                   TCGA-BR-8286                    TCGA-BR-8289 
"DEL PEAK  7(3P26.1) WILD-TYPE" "DEL PEAK  7(3P26.1) WILD-TYPE" 
                   TCGA-BR-8291                    TCGA-BR-8295 
"DEL PEAK  7(3P26.1) WILD-TYPE" "DEL PEAK  7(3P26.1) WILD-TYPE" 
                   TCGA-BR-8296                    TCGA-BR-8297 
"DEL PEAK  7(3P26.1) WILD-TYPE" "DEL PEAK  7(3P26.1) WILD-TYPE" 
                   TCGA-CD-5798                    TCGA-CD-5799 
"DEL PEAK  7(3P26.1) WILD-TYPE"   "DEL PEAK  7(3P26.1) MUTATED" 
                   TCGA-CD-5800                    TCGA-CD-5801 
  "DEL PEAK  7(3P26.1) MUTATED"   "DEL PEAK  7(3P26.1) MUTATED" 
                   TCGA-CD-5802                    TCGA-CD-5803 
"DEL PEAK  7(3P26.1) WILD-TYPE" "DEL PEAK  7(3P26.1) WILD-TYPE" 
                   TCGA-CG-4300                    TCGA-CG-4301 
  "DEL PEAK  7(3P26.1) MUTATED"   "DEL PEAK  7(3P26.1) MUTATED" 
                   TCGA-CG-4304                    TCGA-CG-4305 
"DEL PEAK  7(3P26.1) WILD-TYPE" "DEL PEAK  7(3P26.1) WILD-TYPE" 
                   TCGA-CG-4306                    TCGA-CG-4436 
"DEL PEAK  7(3P26.1) WILD-TYPE"   "DEL PEAK  7(3P26.1) MUTATED" 
                   TCGA-CG-4437                    TCGA-CG-4438 
  "DEL PEAK  7(3P26.1) MUTATED"   "DEL PEAK  7(3P26.1) MUTATED" 
                   TCGA-CG-4440                    TCGA-CG-4441 
  "DEL PEAK  7(3P26.1) MUTATED" "DEL PEAK  7(3P26.1) WILD-TYPE" 
                   TCGA-CG-4443                    TCGA-CG-4444 
"DEL PEAK  7(3P26.1) WILD-TYPE"   "DEL PEAK  7(3P26.1) MUTATED" 
                   TCGA-CG-4449                    TCGA-CG-4455 
"DEL PEAK  7(3P26.1) WILD-TYPE"   "DEL PEAK  7(3P26.1) MUTATED" 
                   TCGA-CG-4460                    TCGA-CG-4462 
"DEL PEAK  7(3P26.1) WILD-TYPE" "DEL PEAK  7(3P26.1) WILD-TYPE" 
                   TCGA-CG-4465                    TCGA-CG-4466 
"DEL PEAK  7(3P26.1) WILD-TYPE"   "DEL PEAK  7(3P26.1) MUTATED" 
                   TCGA-CG-4469                    TCGA-CG-4472 
"DEL PEAK  7(3P26.1) WILD-TYPE" "DEL PEAK  7(3P26.1) WILD-TYPE" 
                   TCGA-CG-4474                    TCGA-CG-4477 
"DEL PEAK  7(3P26.1) WILD-TYPE" "DEL PEAK  7(3P26.1) WILD-TYPE" 
                   TCGA-CG-5716                    TCGA-CG-5717 
"DEL PEAK  7(3P26.1) WILD-TYPE" "DEL PEAK  7(3P26.1) WILD-TYPE" 
                   TCGA-CG-5718                    TCGA-CG-5719 
  "DEL PEAK  7(3P26.1) MUTATED" "DEL PEAK  7(3P26.1) WILD-TYPE" 
                   TCGA-CG-5720                    TCGA-CG-5721 
"DEL PEAK  7(3P26.1) WILD-TYPE" "DEL PEAK  7(3P26.1) WILD-TYPE" 
                   TCGA-CG-5722                    TCGA-CG-5723 
"DEL PEAK  7(3P26.1) WILD-TYPE" "DEL PEAK  7(3P26.1) WILD-TYPE" 
                   TCGA-CG-5724                    TCGA-CG-5725 
"DEL PEAK  7(3P26.1) WILD-TYPE"   "DEL PEAK  7(3P26.1) MUTATED" 
                   TCGA-CG-5726                    TCGA-CG-5727 
"DEL PEAK  7(3P26.1) WILD-TYPE" "DEL PEAK  7(3P26.1) WILD-TYPE" 
                   TCGA-CG-5728                    TCGA-CG-5730 
"DEL PEAK  7(3P26.1) WILD-TYPE"   "DEL PEAK  7(3P26.1) MUTATED" 
                   TCGA-CG-5732                    TCGA-CG-5733 
"DEL PEAK  7(3P26.1) WILD-TYPE" "DEL PEAK  7(3P26.1) WILD-TYPE" 
                   TCGA-CG-5734                    TCGA-D7-5577 
"DEL PEAK  7(3P26.1) WILD-TYPE" "DEL PEAK  7(3P26.1) WILD-TYPE" 
                   TCGA-D7-5578                    TCGA-D7-5579 
  "DEL PEAK  7(3P26.1) MUTATED" "DEL PEAK  7(3P26.1) WILD-TYPE" 
                   TCGA-D7-6518                    TCGA-D7-6519 
"DEL PEAK  7(3P26.1) WILD-TYPE" "DEL PEAK  7(3P26.1) WILD-TYPE" 
                   TCGA-D7-6520                    TCGA-D7-6521 
"DEL PEAK  7(3P26.1) WILD-TYPE" "DEL PEAK  7(3P26.1) WILD-TYPE" 
                   TCGA-D7-6522                    TCGA-D7-6524 
"DEL PEAK  7(3P26.1) WILD-TYPE" "DEL PEAK  7(3P26.1) WILD-TYPE" 
                   TCGA-D7-6525                    TCGA-D7-6526 
  "DEL PEAK  7(3P26.1) MUTATED"   "DEL PEAK  7(3P26.1) MUTATED" 
                   TCGA-D7-6527                    TCGA-D7-6528 
"DEL PEAK  7(3P26.1) WILD-TYPE"   "DEL PEAK  7(3P26.1) MUTATED" 
                   TCGA-D7-6815                    TCGA-D7-6817 
"DEL PEAK  7(3P26.1) WILD-TYPE"   "DEL PEAK  7(3P26.1) MUTATED" 
                   TCGA-D7-6818                    TCGA-D7-6820 
"DEL PEAK  7(3P26.1) WILD-TYPE" "DEL PEAK  7(3P26.1) WILD-TYPE" 
                   TCGA-D7-6822                    TCGA-EQ-5647 
"DEL PEAK  7(3P26.1) WILD-TYPE"   "DEL PEAK  7(3P26.1) MUTATED" 
                   TCGA-EQ-8122                    TCGA-F1-6177 
"DEL PEAK  7(3P26.1) WILD-TYPE" "DEL PEAK  7(3P26.1) WILD-TYPE" 
                   TCGA-F1-6874                    TCGA-F1-6875 
"DEL PEAK  7(3P26.1) WILD-TYPE" "DEL PEAK  7(3P26.1) WILD-TYPE" 
                   TCGA-FP-7735                    TCGA-FP-7829 
"DEL PEAK  7(3P26.1) WILD-TYPE"   "DEL PEAK  7(3P26.1) MUTATED" 
                   TCGA-FP-7916                    TCGA-FP-7998 
  "DEL PEAK  7(3P26.1) MUTATED" "DEL PEAK  7(3P26.1) WILD-TYPE" 
                   TCGA-HJ-7597                    TCGA-IN-7806 
"DEL PEAK  7(3P26.1) WILD-TYPE"   "DEL PEAK  7(3P26.1) MUTATED" 
                   TCGA-IN-7808                    TCGA-IP-7968 
"DEL PEAK  7(3P26.1) WILD-TYPE" "DEL PEAK  7(3P26.1) WILD-TYPE" 
[1] "hr=" "1.4"
D33V2, continuous
D33V3, binary
[1] "tbl2"
                               cls
clus                            [,1] [,2]
  DEL PEAK  7(3P26.1) MUTATED     17   21
  DEL PEAK  7(3P26.1) WILD-TYPE   48   75
        clus
vv       DEL PEAK  7(3P26.1) MUTATED DEL PEAK  7(3P26.1) WILD-TYPE
  FEMALE                          17                            48
  MALE                            21                            75
D33V4, multiclass
D33V5, multiclass
    clus
vv   DEL PEAK  7(3P26.1) MUTATED DEL PEAK  7(3P26.1) WILD-TYPE
  T1                           0                             6
  T2                          13                            40
  T3                          17                            42
  T4                           6                            27
D33V6, multiclass
    clus
vv   DEL PEAK  7(3P26.1) MUTATED DEL PEAK  7(3P26.1) WILD-TYPE
  N0                           9                            41
  N1                          14                            43
  N2                           8                            16
  N3                           5                            14
D33V7, multiclass
    clus
vv   DEL PEAK  7(3P26.1) MUTATED DEL PEAK  7(3P26.1) WILD-TYPE
  M0                          30                           102
  M1                           5                            13
  MX                           3                             8
D33V8, multiclass
     clus
vv    DEL PEAK  7(3P26.1) MUTATED DEL PEAK  7(3P26.1) WILD-TYPE
  I                             5                            20
  II                           10                            33
  III                          13                            35
  IV                            7                            22
D33V9, binary
[1] "tbl2"
                               cls
clus                            [,1] [,2]
  DEL PEAK  7(3P26.1) MUTATED     37    1
  DEL PEAK  7(3P26.1) WILD-TYPE  119    4
     clus
vv    DEL PEAK  7(3P26.1) MUTATED DEL PEAK  7(3P26.1) WILD-TYPE
  NO                            1                             4
  YES                          37                           119

Clustering(34) Variable = Del Peak  8(3p14.2) mutation analysis
D34V1, survival
                   TCGA-B7-5816                    TCGA-B7-5818 
  "DEL PEAK  8(3P14.2) MUTATED" "DEL PEAK  8(3P14.2) WILD-TYPE" 
                   TCGA-BR-6452                    TCGA-BR-6455 
"DEL PEAK  8(3P14.2) WILD-TYPE" "DEL PEAK  8(3P14.2) WILD-TYPE" 
                   TCGA-BR-6457                    TCGA-BR-6458 
"DEL PEAK  8(3P14.2) WILD-TYPE"   "DEL PEAK  8(3P14.2) MUTATED" 
                   TCGA-BR-6563                    TCGA-BR-6564 
"DEL PEAK  8(3P14.2) WILD-TYPE" "DEL PEAK  8(3P14.2) WILD-TYPE" 
                   TCGA-BR-6565                    TCGA-BR-6566 
  "DEL PEAK  8(3P14.2) MUTATED" "DEL PEAK  8(3P14.2) WILD-TYPE" 
                   TCGA-BR-6705                    TCGA-BR-6706 
  "DEL PEAK  8(3P14.2) MUTATED" "DEL PEAK  8(3P14.2) WILD-TYPE" 
                   TCGA-BR-6707                    TCGA-BR-6709 
"DEL PEAK  8(3P14.2) WILD-TYPE" "DEL PEAK  8(3P14.2) WILD-TYPE" 
                   TCGA-BR-6710                    TCGA-BR-6801 
"DEL PEAK  8(3P14.2) WILD-TYPE" "DEL PEAK  8(3P14.2) WILD-TYPE" 
                   TCGA-BR-6802                    TCGA-BR-6803 
"DEL PEAK  8(3P14.2) WILD-TYPE"   "DEL PEAK  8(3P14.2) MUTATED" 
                   TCGA-BR-6852                    TCGA-BR-7196 
  "DEL PEAK  8(3P14.2) MUTATED" "DEL PEAK  8(3P14.2) WILD-TYPE" 
                   TCGA-BR-7197                    TCGA-BR-7703 
"DEL PEAK  8(3P14.2) WILD-TYPE" "DEL PEAK  8(3P14.2) WILD-TYPE" 
                   TCGA-BR-7704                    TCGA-BR-7707 
"DEL PEAK  8(3P14.2) WILD-TYPE" "DEL PEAK  8(3P14.2) WILD-TYPE" 
                   TCGA-BR-7715                    TCGA-BR-7716 
  "DEL PEAK  8(3P14.2) MUTATED"   "DEL PEAK  8(3P14.2) MUTATED" 
                   TCGA-BR-7717                    TCGA-BR-7722 
"DEL PEAK  8(3P14.2) WILD-TYPE"   "DEL PEAK  8(3P14.2) MUTATED" 
                   TCGA-BR-7723                    TCGA-BR-7851 
"DEL PEAK  8(3P14.2) WILD-TYPE" "DEL PEAK  8(3P14.2) WILD-TYPE" 
                   TCGA-BR-7901                    TCGA-BR-7957 
  "DEL PEAK  8(3P14.2) MUTATED"   "DEL PEAK  8(3P14.2) MUTATED" 
                   TCGA-BR-7958                    TCGA-BR-7959 
"DEL PEAK  8(3P14.2) WILD-TYPE" "DEL PEAK  8(3P14.2) WILD-TYPE" 
                   TCGA-BR-8059                    TCGA-BR-8060 
"DEL PEAK  8(3P14.2) WILD-TYPE" "DEL PEAK  8(3P14.2) WILD-TYPE" 
                   TCGA-BR-8077                    TCGA-BR-8078 
"DEL PEAK  8(3P14.2) WILD-TYPE" "DEL PEAK  8(3P14.2) WILD-TYPE" 
                   TCGA-BR-8080                    TCGA-BR-8081 
"DEL PEAK  8(3P14.2) WILD-TYPE" "DEL PEAK  8(3P14.2) WILD-TYPE" 
                   TCGA-BR-8284                    TCGA-BR-8285 
"DEL PEAK  8(3P14.2) WILD-TYPE" "DEL PEAK  8(3P14.2) WILD-TYPE" 
                   TCGA-BR-8286                    TCGA-BR-8289 
"DEL PEAK  8(3P14.2) WILD-TYPE" "DEL PEAK  8(3P14.2) WILD-TYPE" 
                   TCGA-BR-8291                    TCGA-BR-8295 
"DEL PEAK  8(3P14.2) WILD-TYPE" "DEL PEAK  8(3P14.2) WILD-TYPE" 
                   TCGA-BR-8296                    TCGA-BR-8297 
"DEL PEAK  8(3P14.2) WILD-TYPE" "DEL PEAK  8(3P14.2) WILD-TYPE" 
                   TCGA-CD-5798                    TCGA-CD-5799 
"DEL PEAK  8(3P14.2) WILD-TYPE"   "DEL PEAK  8(3P14.2) MUTATED" 
                   TCGA-CD-5800                    TCGA-CD-5801 
  "DEL PEAK  8(3P14.2) MUTATED"   "DEL PEAK  8(3P14.2) MUTATED" 
                   TCGA-CD-5802                    TCGA-CD-5803 
"DEL PEAK  8(3P14.2) WILD-TYPE" "DEL PEAK  8(3P14.2) WILD-TYPE" 
                   TCGA-CG-4300                    TCGA-CG-4301 
  "DEL PEAK  8(3P14.2) MUTATED"   "DEL PEAK  8(3P14.2) MUTATED" 
                   TCGA-CG-4304                    TCGA-CG-4305 
"DEL PEAK  8(3P14.2) WILD-TYPE"   "DEL PEAK  8(3P14.2) MUTATED" 
                   TCGA-CG-4306                    TCGA-CG-4436 
"DEL PEAK  8(3P14.2) WILD-TYPE"   "DEL PEAK  8(3P14.2) MUTATED" 
                   TCGA-CG-4437                    TCGA-CG-4438 
  "DEL PEAK  8(3P14.2) MUTATED"   "DEL PEAK  8(3P14.2) MUTATED" 
                   TCGA-CG-4440                    TCGA-CG-4441 
  "DEL PEAK  8(3P14.2) MUTATED"   "DEL PEAK  8(3P14.2) MUTATED" 
                   TCGA-CG-4443                    TCGA-CG-4444 
"DEL PEAK  8(3P14.2) WILD-TYPE"   "DEL PEAK  8(3P14.2) MUTATED" 
                   TCGA-CG-4449                    TCGA-CG-4455 
"DEL PEAK  8(3P14.2) WILD-TYPE"   "DEL PEAK  8(3P14.2) MUTATED" 
                   TCGA-CG-4460                    TCGA-CG-4462 
"DEL PEAK  8(3P14.2) WILD-TYPE" "DEL PEAK  8(3P14.2) WILD-TYPE" 
                   TCGA-CG-4465                    TCGA-CG-4466 
"DEL PEAK  8(3P14.2) WILD-TYPE"   "DEL PEAK  8(3P14.2) MUTATED" 
                   TCGA-CG-4469                    TCGA-CG-4472 
"DEL PEAK  8(3P14.2) WILD-TYPE" "DEL PEAK  8(3P14.2) WILD-TYPE" 
                   TCGA-CG-4474                    TCGA-CG-4477 
"DEL PEAK  8(3P14.2) WILD-TYPE" "DEL PEAK  8(3P14.2) WILD-TYPE" 
                   TCGA-CG-5716                    TCGA-CG-5717 
"DEL PEAK  8(3P14.2) WILD-TYPE" "DEL PEAK  8(3P14.2) WILD-TYPE" 
                   TCGA-CG-5718                    TCGA-CG-5719 
  "DEL PEAK  8(3P14.2) MUTATED"   "DEL PEAK  8(3P14.2) MUTATED" 
                   TCGA-CG-5720                    TCGA-CG-5721 
"DEL PEAK  8(3P14.2) WILD-TYPE" "DEL PEAK  8(3P14.2) WILD-TYPE" 
                   TCGA-CG-5722                    TCGA-CG-5723 
"DEL PEAK  8(3P14.2) WILD-TYPE" "DEL PEAK  8(3P14.2) WILD-TYPE" 
                   TCGA-CG-5724                    TCGA-CG-5725 
  "DEL PEAK  8(3P14.2) MUTATED"   "DEL PEAK  8(3P14.2) MUTATED" 
                   TCGA-CG-5726                    TCGA-CG-5727 
"DEL PEAK  8(3P14.2) WILD-TYPE" "DEL PEAK  8(3P14.2) WILD-TYPE" 
                   TCGA-CG-5728                    TCGA-CG-5730 
"DEL PEAK  8(3P14.2) WILD-TYPE"   "DEL PEAK  8(3P14.2) MUTATED" 
                   TCGA-CG-5732                    TCGA-CG-5733 
"DEL PEAK  8(3P14.2) WILD-TYPE" "DEL PEAK  8(3P14.2) WILD-TYPE" 
                   TCGA-CG-5734                    TCGA-D7-5577 
"DEL PEAK  8(3P14.2) WILD-TYPE"   "DEL PEAK  8(3P14.2) MUTATED" 
                   TCGA-D7-5578                    TCGA-D7-5579 
"DEL PEAK  8(3P14.2) WILD-TYPE" "DEL PEAK  8(3P14.2) WILD-TYPE" 
                   TCGA-D7-6518                    TCGA-D7-6519 
"DEL PEAK  8(3P14.2) WILD-TYPE"   "DEL PEAK  8(3P14.2) MUTATED" 
                   TCGA-D7-6520                    TCGA-D7-6521 
  "DEL PEAK  8(3P14.2) MUTATED" "DEL PEAK  8(3P14.2) WILD-TYPE" 
                   TCGA-D7-6522                    TCGA-D7-6524 
"DEL PEAK  8(3P14.2) WILD-TYPE" "DEL PEAK  8(3P14.2) WILD-TYPE" 
                   TCGA-D7-6525                    TCGA-D7-6526 
  "DEL PEAK  8(3P14.2) MUTATED"   "DEL PEAK  8(3P14.2) MUTATED" 
                   TCGA-D7-6527                    TCGA-D7-6528 
  "DEL PEAK  8(3P14.2) MUTATED"   "DEL PEAK  8(3P14.2) MUTATED" 
                   TCGA-D7-6815                    TCGA-D7-6817 
"DEL PEAK  8(3P14.2) WILD-TYPE"   "DEL PEAK  8(3P14.2) MUTATED" 
                   TCGA-D7-6818                    TCGA-D7-6820 
"DEL PEAK  8(3P14.2) WILD-TYPE" "DEL PEAK  8(3P14.2) WILD-TYPE" 
                   TCGA-D7-6822                    TCGA-EQ-5647 
  "DEL PEAK  8(3P14.2) MUTATED"   "DEL PEAK  8(3P14.2) MUTATED" 
                   TCGA-EQ-8122                    TCGA-F1-6177 
"DEL PEAK  8(3P14.2) WILD-TYPE" "DEL PEAK  8(3P14.2) WILD-TYPE" 
                   TCGA-F1-6874                    TCGA-F1-6875 
"DEL PEAK  8(3P14.2) WILD-TYPE" "DEL PEAK  8(3P14.2) WILD-TYPE" 
                   TCGA-FP-7735                    TCGA-FP-7829 
"DEL PEAK  8(3P14.2) WILD-TYPE"   "DEL PEAK  8(3P14.2) MUTATED" 
                   TCGA-FP-7916                    TCGA-FP-7998 
  "DEL PEAK  8(3P14.2) MUTATED" "DEL PEAK  8(3P14.2) WILD-TYPE" 
                   TCGA-HJ-7597                    TCGA-IN-7806 
  "DEL PEAK  8(3P14.2) MUTATED"   "DEL PEAK  8(3P14.2) MUTATED" 
                   TCGA-IN-7808                    TCGA-IP-7968 
"DEL PEAK  8(3P14.2) WILD-TYPE" "DEL PEAK  8(3P14.2) WILD-TYPE" 
                   TCGA-B7-5816                    TCGA-B7-5818 
  "DEL PEAK  8(3P14.2) MUTATED" "DEL PEAK  8(3P14.2) WILD-TYPE" 
                   TCGA-BR-6452                    TCGA-BR-6455 
"DEL PEAK  8(3P14.2) WILD-TYPE" "DEL PEAK  8(3P14.2) WILD-TYPE" 
                   TCGA-BR-6457                    TCGA-BR-6458 
"DEL PEAK  8(3P14.2) WILD-TYPE"   "DEL PEAK  8(3P14.2) MUTATED" 
                   TCGA-BR-6563                    TCGA-BR-6564 
"DEL PEAK  8(3P14.2) WILD-TYPE" "DEL PEAK  8(3P14.2) WILD-TYPE" 
                   TCGA-BR-6565                    TCGA-BR-6566 
  "DEL PEAK  8(3P14.2) MUTATED" "DEL PEAK  8(3P14.2) WILD-TYPE" 
                   TCGA-BR-6705                    TCGA-BR-6706 
  "DEL PEAK  8(3P14.2) MUTATED" "DEL PEAK  8(3P14.2) WILD-TYPE" 
                   TCGA-BR-6707                    TCGA-BR-6709 
"DEL PEAK  8(3P14.2) WILD-TYPE" "DEL PEAK  8(3P14.2) WILD-TYPE" 
                   TCGA-BR-6710                    TCGA-BR-6801 
"DEL PEAK  8(3P14.2) WILD-TYPE" "DEL PEAK  8(3P14.2) WILD-TYPE" 
                   TCGA-BR-6802                    TCGA-BR-6803 
"DEL PEAK  8(3P14.2) WILD-TYPE"   "DEL PEAK  8(3P14.2) MUTATED" 
                   TCGA-BR-6852                    TCGA-BR-7196 
  "DEL PEAK  8(3P14.2) MUTATED" "DEL PEAK  8(3P14.2) WILD-TYPE" 
                   TCGA-BR-7197                    TCGA-BR-7703 
"DEL PEAK  8(3P14.2) WILD-TYPE" "DEL PEAK  8(3P14.2) WILD-TYPE" 
                   TCGA-BR-7704                    TCGA-BR-7707 
"DEL PEAK  8(3P14.2) WILD-TYPE" "DEL PEAK  8(3P14.2) WILD-TYPE" 
                   TCGA-BR-7715                    TCGA-BR-7716 
  "DEL PEAK  8(3P14.2) MUTATED"   "DEL PEAK  8(3P14.2) MUTATED" 
                   TCGA-BR-7717                    TCGA-BR-7722 
"DEL PEAK  8(3P14.2) WILD-TYPE"   "DEL PEAK  8(3P14.2) MUTATED" 
                   TCGA-BR-7723                    TCGA-BR-7851 
"DEL PEAK  8(3P14.2) WILD-TYPE" "DEL PEAK  8(3P14.2) WILD-TYPE" 
                   TCGA-BR-7901                    TCGA-BR-7957 
  "DEL PEAK  8(3P14.2) MUTATED"   "DEL PEAK  8(3P14.2) MUTATED" 
                   TCGA-BR-7958                    TCGA-BR-7959 
"DEL PEAK  8(3P14.2) WILD-TYPE" "DEL PEAK  8(3P14.2) WILD-TYPE" 
                   TCGA-BR-8059                    TCGA-BR-8060 
"DEL PEAK  8(3P14.2) WILD-TYPE" "DEL PEAK  8(3P14.2) WILD-TYPE" 
                   TCGA-BR-8077                    TCGA-BR-8078 
"DEL PEAK  8(3P14.2) WILD-TYPE" "DEL PEAK  8(3P14.2) WILD-TYPE" 
                   TCGA-BR-8080                    TCGA-BR-8081 
"DEL PEAK  8(3P14.2) WILD-TYPE" "DEL PEAK  8(3P14.2) WILD-TYPE" 
                   TCGA-BR-8284                    TCGA-BR-8285 
"DEL PEAK  8(3P14.2) WILD-TYPE" "DEL PEAK  8(3P14.2) WILD-TYPE" 
                   TCGA-BR-8286                    TCGA-BR-8289 
"DEL PEAK  8(3P14.2) WILD-TYPE" "DEL PEAK  8(3P14.2) WILD-TYPE" 
                   TCGA-BR-8291                    TCGA-BR-8295 
"DEL PEAK  8(3P14.2) WILD-TYPE" "DEL PEAK  8(3P14.2) WILD-TYPE" 
                   TCGA-BR-8296                    TCGA-BR-8297 
"DEL PEAK  8(3P14.2) WILD-TYPE" "DEL PEAK  8(3P14.2) WILD-TYPE" 
                   TCGA-CD-5798                    TCGA-CD-5799 
"DEL PEAK  8(3P14.2) WILD-TYPE"   "DEL PEAK  8(3P14.2) MUTATED" 
                   TCGA-CD-5800                    TCGA-CD-5801 
  "DEL PEAK  8(3P14.2) MUTATED"   "DEL PEAK  8(3P14.2) MUTATED" 
                   TCGA-CD-5802                    TCGA-CD-5803 
"DEL PEAK  8(3P14.2) WILD-TYPE" "DEL PEAK  8(3P14.2) WILD-TYPE" 
                   TCGA-CG-4300                    TCGA-CG-4301 
  "DEL PEAK  8(3P14.2) MUTATED"   "DEL PEAK  8(3P14.2) MUTATED" 
                   TCGA-CG-4304                    TCGA-CG-4305 
"DEL PEAK  8(3P14.2) WILD-TYPE"   "DEL PEAK  8(3P14.2) MUTATED" 
                   TCGA-CG-4306                    TCGA-CG-4436 
"DEL PEAK  8(3P14.2) WILD-TYPE"   "DEL PEAK  8(3P14.2) MUTATED" 
                   TCGA-CG-4437                    TCGA-CG-4438 
  "DEL PEAK  8(3P14.2) MUTATED"   "DEL PEAK  8(3P14.2) MUTATED" 
                   TCGA-CG-4440                    TCGA-CG-4441 
  "DEL PEAK  8(3P14.2) MUTATED"   "DEL PEAK  8(3P14.2) MUTATED" 
                   TCGA-CG-4443                    TCGA-CG-4444 
"DEL PEAK  8(3P14.2) WILD-TYPE"   "DEL PEAK  8(3P14.2) MUTATED" 
                   TCGA-CG-4449                    TCGA-CG-4455 
"DEL PEAK  8(3P14.2) WILD-TYPE"   "DEL PEAK  8(3P14.2) MUTATED" 
                   TCGA-CG-4460                    TCGA-CG-4462 
"DEL PEAK  8(3P14.2) WILD-TYPE" "DEL PEAK  8(3P14.2) WILD-TYPE" 
                   TCGA-CG-4465                    TCGA-CG-4466 
"DEL PEAK  8(3P14.2) WILD-TYPE"   "DEL PEAK  8(3P14.2) MUTATED" 
                   TCGA-CG-4469                    TCGA-CG-4472 
"DEL PEAK  8(3P14.2) WILD-TYPE" "DEL PEAK  8(3P14.2) WILD-TYPE" 
                   TCGA-CG-4474                    TCGA-CG-4477 
"DEL PEAK  8(3P14.2) WILD-TYPE" "DEL PEAK  8(3P14.2) WILD-TYPE" 
                   TCGA-CG-5716                    TCGA-CG-5717 
"DEL PEAK  8(3P14.2) WILD-TYPE" "DEL PEAK  8(3P14.2) WILD-TYPE" 
                   TCGA-CG-5718                    TCGA-CG-5719 
  "DEL PEAK  8(3P14.2) MUTATED"   "DEL PEAK  8(3P14.2) MUTATED" 
                   TCGA-CG-5720                    TCGA-CG-5721 
"DEL PEAK  8(3P14.2) WILD-TYPE" "DEL PEAK  8(3P14.2) WILD-TYPE" 
                   TCGA-CG-5722                    TCGA-CG-5723 
"DEL PEAK  8(3P14.2) WILD-TYPE" "DEL PEAK  8(3P14.2) WILD-TYPE" 
                   TCGA-CG-5724                    TCGA-CG-5725 
  "DEL PEAK  8(3P14.2) MUTATED"   "DEL PEAK  8(3P14.2) MUTATED" 
                   TCGA-CG-5726                    TCGA-CG-5727 
"DEL PEAK  8(3P14.2) WILD-TYPE" "DEL PEAK  8(3P14.2) WILD-TYPE" 
                   TCGA-CG-5728                    TCGA-CG-5730 
"DEL PEAK  8(3P14.2) WILD-TYPE"   "DEL PEAK  8(3P14.2) MUTATED" 
                   TCGA-CG-5732                    TCGA-CG-5733 
"DEL PEAK  8(3P14.2) WILD-TYPE" "DEL PEAK  8(3P14.2) WILD-TYPE" 
                   TCGA-CG-5734                    TCGA-D7-5577 
"DEL PEAK  8(3P14.2) WILD-TYPE"   "DEL PEAK  8(3P14.2) MUTATED" 
                   TCGA-D7-5578                    TCGA-D7-5579 
"DEL PEAK  8(3P14.2) WILD-TYPE" "DEL PEAK  8(3P14.2) WILD-TYPE" 
                   TCGA-D7-6518                    TCGA-D7-6519 
"DEL PEAK  8(3P14.2) WILD-TYPE"   "DEL PEAK  8(3P14.2) MUTATED" 
                   TCGA-D7-6520                    TCGA-D7-6521 
  "DEL PEAK  8(3P14.2) MUTATED" "DEL PEAK  8(3P14.2) WILD-TYPE" 
                   TCGA-D7-6522                    TCGA-D7-6524 
"DEL PEAK  8(3P14.2) WILD-TYPE" "DEL PEAK  8(3P14.2) WILD-TYPE" 
                   TCGA-D7-6525                    TCGA-D7-6526 
  "DEL PEAK  8(3P14.2) MUTATED"   "DEL PEAK  8(3P14.2) MUTATED" 
                   TCGA-D7-6527                    TCGA-D7-6528 
  "DEL PEAK  8(3P14.2) MUTATED"   "DEL PEAK  8(3P14.2) MUTATED" 
                   TCGA-D7-6815                    TCGA-D7-6817 
"DEL PEAK  8(3P14.2) WILD-TYPE"   "DEL PEAK  8(3P14.2) MUTATED" 
                   TCGA-D7-6818                    TCGA-D7-6820 
"DEL PEAK  8(3P14.2) WILD-TYPE" "DEL PEAK  8(3P14.2) WILD-TYPE" 
                   TCGA-D7-6822                    TCGA-EQ-5647 
  "DEL PEAK  8(3P14.2) MUTATED"   "DEL PEAK  8(3P14.2) MUTATED" 
                   TCGA-EQ-8122                    TCGA-F1-6177 
"DEL PEAK  8(3P14.2) WILD-TYPE" "DEL PEAK  8(3P14.2) WILD-TYPE" 
                   TCGA-F1-6874                    TCGA-F1-6875 
"DEL PEAK  8(3P14.2) WILD-TYPE" "DEL PEAK  8(3P14.2) WILD-TYPE" 
                   TCGA-FP-7735                    TCGA-FP-7829 
"DEL PEAK  8(3P14.2) WILD-TYPE"   "DEL PEAK  8(3P14.2) MUTATED" 
                   TCGA-FP-7916                    TCGA-FP-7998 
  "DEL PEAK  8(3P14.2) MUTATED" "DEL PEAK  8(3P14.2) WILD-TYPE" 
                   TCGA-HJ-7597                    TCGA-IN-7806 
  "DEL PEAK  8(3P14.2) MUTATED"   "DEL PEAK  8(3P14.2) MUTATED" 
                   TCGA-IN-7808                    TCGA-IP-7968 
"DEL PEAK  8(3P14.2) WILD-TYPE" "DEL PEAK  8(3P14.2) WILD-TYPE" 
                   TCGA-B7-5816                    TCGA-B7-5818 
  "DEL PEAK  8(3P14.2) MUTATED" "DEL PEAK  8(3P14.2) WILD-TYPE" 
                   TCGA-BR-6452                    TCGA-BR-6455 
"DEL PEAK  8(3P14.2) WILD-TYPE" "DEL PEAK  8(3P14.2) WILD-TYPE" 
                   TCGA-BR-6457                    TCGA-BR-6458 
"DEL PEAK  8(3P14.2) WILD-TYPE"   "DEL PEAK  8(3P14.2) MUTATED" 
                   TCGA-BR-6563                    TCGA-BR-6564 
"DEL PEAK  8(3P14.2) WILD-TYPE" "DEL PEAK  8(3P14.2) WILD-TYPE" 
                   TCGA-BR-6565                    TCGA-BR-6566 
  "DEL PEAK  8(3P14.2) MUTATED" "DEL PEAK  8(3P14.2) WILD-TYPE" 
                   TCGA-BR-6705                    TCGA-BR-6706 
  "DEL PEAK  8(3P14.2) MUTATED" "DEL PEAK  8(3P14.2) WILD-TYPE" 
                   TCGA-BR-6707                    TCGA-BR-6709 
"DEL PEAK  8(3P14.2) WILD-TYPE" "DEL PEAK  8(3P14.2) WILD-TYPE" 
                   TCGA-BR-6710                    TCGA-BR-6801 
"DEL PEAK  8(3P14.2) WILD-TYPE" "DEL PEAK  8(3P14.2) WILD-TYPE" 
                   TCGA-BR-6802                    TCGA-BR-6803 
"DEL PEAK  8(3P14.2) WILD-TYPE"   "DEL PEAK  8(3P14.2) MUTATED" 
                   TCGA-BR-6852                    TCGA-BR-7196 
  "DEL PEAK  8(3P14.2) MUTATED" "DEL PEAK  8(3P14.2) WILD-TYPE" 
                   TCGA-BR-7197                    TCGA-BR-7703 
"DEL PEAK  8(3P14.2) WILD-TYPE" "DEL PEAK  8(3P14.2) WILD-TYPE" 
                   TCGA-BR-7704                    TCGA-BR-7707 
"DEL PEAK  8(3P14.2) WILD-TYPE" "DEL PEAK  8(3P14.2) WILD-TYPE" 
                   TCGA-BR-7715                    TCGA-BR-7716 
  "DEL PEAK  8(3P14.2) MUTATED"   "DEL PEAK  8(3P14.2) MUTATED" 
                   TCGA-BR-7717                    TCGA-BR-7722 
"DEL PEAK  8(3P14.2) WILD-TYPE"   "DEL PEAK  8(3P14.2) MUTATED" 
                   TCGA-BR-7723                    TCGA-BR-7851 
"DEL PEAK  8(3P14.2) WILD-TYPE" "DEL PEAK  8(3P14.2) WILD-TYPE" 
                   TCGA-BR-7901                    TCGA-BR-7957 
  "DEL PEAK  8(3P14.2) MUTATED"   "DEL PEAK  8(3P14.2) MUTATED" 
                   TCGA-BR-7958                    TCGA-BR-7959 
"DEL PEAK  8(3P14.2) WILD-TYPE" "DEL PEAK  8(3P14.2) WILD-TYPE" 
                   TCGA-BR-8059                    TCGA-BR-8060 
"DEL PEAK  8(3P14.2) WILD-TYPE" "DEL PEAK  8(3P14.2) WILD-TYPE" 
                   TCGA-BR-8077                    TCGA-BR-8078 
"DEL PEAK  8(3P14.2) WILD-TYPE" "DEL PEAK  8(3P14.2) WILD-TYPE" 
                   TCGA-BR-8080                    TCGA-BR-8081 
"DEL PEAK  8(3P14.2) WILD-TYPE" "DEL PEAK  8(3P14.2) WILD-TYPE" 
                   TCGA-BR-8284                    TCGA-BR-8285 
"DEL PEAK  8(3P14.2) WILD-TYPE" "DEL PEAK  8(3P14.2) WILD-TYPE" 
                   TCGA-BR-8286                    TCGA-BR-8289 
"DEL PEAK  8(3P14.2) WILD-TYPE" "DEL PEAK  8(3P14.2) WILD-TYPE" 
                   TCGA-BR-8291                    TCGA-BR-8295 
"DEL PEAK  8(3P14.2) WILD-TYPE" "DEL PEAK  8(3P14.2) WILD-TYPE" 
                   TCGA-BR-8296                    TCGA-BR-8297 
"DEL PEAK  8(3P14.2) WILD-TYPE" "DEL PEAK  8(3P14.2) WILD-TYPE" 
                   TCGA-CD-5798                    TCGA-CD-5799 
"DEL PEAK  8(3P14.2) WILD-TYPE"   "DEL PEAK  8(3P14.2) MUTATED" 
                   TCGA-CD-5800                    TCGA-CD-5801 
  "DEL PEAK  8(3P14.2) MUTATED"   "DEL PEAK  8(3P14.2) MUTATED" 
                   TCGA-CD-5802                    TCGA-CD-5803 
"DEL PEAK  8(3P14.2) WILD-TYPE" "DEL PEAK  8(3P14.2) WILD-TYPE" 
                   TCGA-CG-4300                    TCGA-CG-4301 
  "DEL PEAK  8(3P14.2) MUTATED"   "DEL PEAK  8(3P14.2) MUTATED" 
                   TCGA-CG-4304                    TCGA-CG-4305 
"DEL PEAK  8(3P14.2) WILD-TYPE"   "DEL PEAK  8(3P14.2) MUTATED" 
                   TCGA-CG-4306                    TCGA-CG-4436 
"DEL PEAK  8(3P14.2) WILD-TYPE"   "DEL PEAK  8(3P14.2) MUTATED" 
                   TCGA-CG-4437                    TCGA-CG-4438 
  "DEL PEAK  8(3P14.2) MUTATED"   "DEL PEAK  8(3P14.2) MUTATED" 
                   TCGA-CG-4440                    TCGA-CG-4441 
  "DEL PEAK  8(3P14.2) MUTATED"   "DEL PEAK  8(3P14.2) MUTATED" 
                   TCGA-CG-4443                    TCGA-CG-4444 
"DEL PEAK  8(3P14.2) WILD-TYPE"   "DEL PEAK  8(3P14.2) MUTATED" 
                   TCGA-CG-4449                    TCGA-CG-4455 
"DEL PEAK  8(3P14.2) WILD-TYPE"   "DEL PEAK  8(3P14.2) MUTATED" 
                   TCGA-CG-4460                    TCGA-CG-4462 
"DEL PEAK  8(3P14.2) WILD-TYPE" "DEL PEAK  8(3P14.2) WILD-TYPE" 
                   TCGA-CG-4465                    TCGA-CG-4466 
"DEL PEAK  8(3P14.2) WILD-TYPE"   "DEL PEAK  8(3P14.2) MUTATED" 
                   TCGA-CG-4469                    TCGA-CG-4472 
"DEL PEAK  8(3P14.2) WILD-TYPE" "DEL PEAK  8(3P14.2) WILD-TYPE" 
                   TCGA-CG-4474                    TCGA-CG-4477 
"DEL PEAK  8(3P14.2) WILD-TYPE" "DEL PEAK  8(3P14.2) WILD-TYPE" 
                   TCGA-CG-5716                    TCGA-CG-5717 
"DEL PEAK  8(3P14.2) WILD-TYPE" "DEL PEAK  8(3P14.2) WILD-TYPE" 
                   TCGA-CG-5718                    TCGA-CG-5719 
  "DEL PEAK  8(3P14.2) MUTATED"   "DEL PEAK  8(3P14.2) MUTATED" 
                   TCGA-CG-5720                    TCGA-CG-5721 
"DEL PEAK  8(3P14.2) WILD-TYPE" "DEL PEAK  8(3P14.2) WILD-TYPE" 
                   TCGA-CG-5722                    TCGA-CG-5723 
"DEL PEAK  8(3P14.2) WILD-TYPE" "DEL PEAK  8(3P14.2) WILD-TYPE" 
                   TCGA-CG-5724                    TCGA-CG-5725 
  "DEL PEAK  8(3P14.2) MUTATED"   "DEL PEAK  8(3P14.2) MUTATED" 
                   TCGA-CG-5726                    TCGA-CG-5727 
"DEL PEAK  8(3P14.2) WILD-TYPE" "DEL PEAK  8(3P14.2) WILD-TYPE" 
                   TCGA-CG-5728                    TCGA-CG-5730 
"DEL PEAK  8(3P14.2) WILD-TYPE"   "DEL PEAK  8(3P14.2) MUTATED" 
                   TCGA-CG-5732                    TCGA-CG-5733 
"DEL PEAK  8(3P14.2) WILD-TYPE" "DEL PEAK  8(3P14.2) WILD-TYPE" 
                   TCGA-CG-5734                    TCGA-D7-5577 
"DEL PEAK  8(3P14.2) WILD-TYPE"   "DEL PEAK  8(3P14.2) MUTATED" 
                   TCGA-D7-5578                    TCGA-D7-5579 
"DEL PEAK  8(3P14.2) WILD-TYPE" "DEL PEAK  8(3P14.2) WILD-TYPE" 
                   TCGA-D7-6518                    TCGA-D7-6519 
"DEL PEAK  8(3P14.2) WILD-TYPE"   "DEL PEAK  8(3P14.2) MUTATED" 
                   TCGA-D7-6520                    TCGA-D7-6521 
  "DEL PEAK  8(3P14.2) MUTATED" "DEL PEAK  8(3P14.2) WILD-TYPE" 
                   TCGA-D7-6522                    TCGA-D7-6524 
"DEL PEAK  8(3P14.2) WILD-TYPE" "DEL PEAK  8(3P14.2) WILD-TYPE" 
                   TCGA-D7-6525                    TCGA-D7-6526 
  "DEL PEAK  8(3P14.2) MUTATED"   "DEL PEAK  8(3P14.2) MUTATED" 
                   TCGA-D7-6527                    TCGA-D7-6528 
  "DEL PEAK  8(3P14.2) MUTATED"   "DEL PEAK  8(3P14.2) MUTATED" 
                   TCGA-D7-6815                    TCGA-D7-6817 
"DEL PEAK  8(3P14.2) WILD-TYPE"   "DEL PEAK  8(3P14.2) MUTATED" 
                   TCGA-D7-6818                    TCGA-D7-6820 
"DEL PEAK  8(3P14.2) WILD-TYPE" "DEL PEAK  8(3P14.2) WILD-TYPE" 
                   TCGA-D7-6822                    TCGA-EQ-5647 
  "DEL PEAK  8(3P14.2) MUTATED"   "DEL PEAK  8(3P14.2) MUTATED" 
                   TCGA-EQ-8122                    TCGA-F1-6177 
"DEL PEAK  8(3P14.2) WILD-TYPE" "DEL PEAK  8(3P14.2) WILD-TYPE" 
                   TCGA-F1-6874                    TCGA-F1-6875 
"DEL PEAK  8(3P14.2) WILD-TYPE" "DEL PEAK  8(3P14.2) WILD-TYPE" 
                   TCGA-FP-7735                    TCGA-FP-7829 
"DEL PEAK  8(3P14.2) WILD-TYPE"   "DEL PEAK  8(3P14.2) MUTATED" 
                   TCGA-FP-7916                    TCGA-FP-7998 
  "DEL PEAK  8(3P14.2) MUTATED" "DEL PEAK  8(3P14.2) WILD-TYPE" 
                   TCGA-HJ-7597                    TCGA-IN-7806 
  "DEL PEAK  8(3P14.2) MUTATED"   "DEL PEAK  8(3P14.2) MUTATED" 
                   TCGA-IN-7808                    TCGA-IP-7968 
"DEL PEAK  8(3P14.2) WILD-TYPE" "DEL PEAK  8(3P14.2) WILD-TYPE" 
[1] "hr=" "1"  
D34V2, continuous
D34V3, binary
[1] "tbl2"
                               cls
clus                            [,1] [,2]
  DEL PEAK  8(3P14.2) MUTATED     24   27
  DEL PEAK  8(3P14.2) WILD-TYPE   41   69
        clus
vv       DEL PEAK  8(3P14.2) MUTATED DEL PEAK  8(3P14.2) WILD-TYPE
  FEMALE                          24                            41
  MALE                            27                            69
D34V4, multiclass
D34V5, multiclass
    clus
vv   DEL PEAK  8(3P14.2) MUTATED DEL PEAK  8(3P14.2) WILD-TYPE
  T1                           0                             6
  T2                          21                            32
  T3                          21                            38
  T4                           8                            25
D34V6, multiclass
    clus
vv   DEL PEAK  8(3P14.2) MUTATED DEL PEAK  8(3P14.2) WILD-TYPE
  N0                          14                            36
  N1                          20                            37
  N2                           9                            15
  N3                           7                            12
D34V7, multiclass
    clus
vv   DEL PEAK  8(3P14.2) MUTATED DEL PEAK  8(3P14.2) WILD-TYPE
  M0                          41                            91
  M1                           7                            11
  MX                           3                             8
D34V8, multiclass
     clus
vv    DEL PEAK  8(3P14.2) MUTATED DEL PEAK  8(3P14.2) WILD-TYPE
  I                             7                            18
  II                           13                            30
  III                          21                            27
  IV                            9                            20
D34V9, binary
[1] "tbl2"
                               cls
clus                            [,1] [,2]
  DEL PEAK  8(3P14.2) MUTATED     49    2
  DEL PEAK  8(3P14.2) WILD-TYPE  107    3
     clus
vv    DEL PEAK  8(3P14.2) MUTATED DEL PEAK  8(3P14.2) WILD-TYPE
  NO                            2                             3
  YES                          49                           107

Clustering(35) Variable = Del Peak  9(3q26.31) mutation analysis
D35V1, survival
                    TCGA-B7-5816                     TCGA-B7-5818 
"DEL PEAK  9(3Q26.31) WILD-TYPE" "DEL PEAK  9(3Q26.31) WILD-TYPE" 
                    TCGA-BR-6452                     TCGA-BR-6455 
"DEL PEAK  9(3Q26.31) WILD-TYPE" "DEL PEAK  9(3Q26.31) WILD-TYPE" 
                    TCGA-BR-6457                     TCGA-BR-6458 
"DEL PEAK  9(3Q26.31) WILD-TYPE"   "DEL PEAK  9(3Q26.31) MUTATED" 
                    TCGA-BR-6563                     TCGA-BR-6564 
"DEL PEAK  9(3Q26.31) WILD-TYPE" "DEL PEAK  9(3Q26.31) WILD-TYPE" 
                    TCGA-BR-6565                     TCGA-BR-6566 
  "DEL PEAK  9(3Q26.31) MUTATED" "DEL PEAK  9(3Q26.31) WILD-TYPE" 
                    TCGA-BR-6705                     TCGA-BR-6706 
"DEL PEAK  9(3Q26.31) WILD-TYPE" "DEL PEAK  9(3Q26.31) WILD-TYPE" 
                    TCGA-BR-6707                     TCGA-BR-6709 
"DEL PEAK  9(3Q26.31) WILD-TYPE" "DEL PEAK  9(3Q26.31) WILD-TYPE" 
                    TCGA-BR-6710                     TCGA-BR-6801 
"DEL PEAK  9(3Q26.31) WILD-TYPE" "DEL PEAK  9(3Q26.31) WILD-TYPE" 
                    TCGA-BR-6802                     TCGA-BR-6803 
"DEL PEAK  9(3Q26.31) WILD-TYPE" "DEL PEAK  9(3Q26.31) WILD-TYPE" 
                    TCGA-BR-6852                     TCGA-BR-7196 
"DEL PEAK  9(3Q26.31) WILD-TYPE" "DEL PEAK  9(3Q26.31) WILD-TYPE" 
                    TCGA-BR-7197                     TCGA-BR-7703 
"DEL PEAK  9(3Q26.31) WILD-TYPE" "DEL PEAK  9(3Q26.31) WILD-TYPE" 
                    TCGA-BR-7704                     TCGA-BR-7707 
"DEL PEAK  9(3Q26.31) WILD-TYPE" "DEL PEAK  9(3Q26.31) WILD-TYPE" 
                    TCGA-BR-7715                     TCGA-BR-7716 
  "DEL PEAK  9(3Q26.31) MUTATED" "DEL PEAK  9(3Q26.31) WILD-TYPE" 
                    TCGA-BR-7717                     TCGA-BR-7722 
"DEL PEAK  9(3Q26.31) WILD-TYPE" "DEL PEAK  9(3Q26.31) WILD-TYPE" 
                    TCGA-BR-7723                     TCGA-BR-7851 
"DEL PEAK  9(3Q26.31) WILD-TYPE" "DEL PEAK  9(3Q26.31) WILD-TYPE" 
                    TCGA-BR-7901                     TCGA-BR-7957 
"DEL PEAK  9(3Q26.31) WILD-TYPE" "DEL PEAK  9(3Q26.31) WILD-TYPE" 
                    TCGA-BR-7958                     TCGA-BR-7959 
"DEL PEAK  9(3Q26.31) WILD-TYPE" "DEL PEAK  9(3Q26.31) WILD-TYPE" 
                    TCGA-BR-8059                     TCGA-BR-8060 
"DEL PEAK  9(3Q26.31) WILD-TYPE" "DEL PEAK  9(3Q26.31) WILD-TYPE" 
                    TCGA-BR-8077                     TCGA-BR-8078 
"DEL PEAK  9(3Q26.31) WILD-TYPE" "DEL PEAK  9(3Q26.31) WILD-TYPE" 
                    TCGA-BR-8080                     TCGA-BR-8081 
"DEL PEAK  9(3Q26.31) WILD-TYPE" "DEL PEAK  9(3Q26.31) WILD-TYPE" 
                    TCGA-BR-8284                     TCGA-BR-8285 
"DEL PEAK  9(3Q26.31) WILD-TYPE" "DEL PEAK  9(3Q26.31) WILD-TYPE" 
                    TCGA-BR-8286                     TCGA-BR-8289 
"DEL PEAK  9(3Q26.31) WILD-TYPE" "DEL PEAK  9(3Q26.31) WILD-TYPE" 
                    TCGA-BR-8291                     TCGA-BR-8295 
"DEL PEAK  9(3Q26.31) WILD-TYPE" "DEL PEAK  9(3Q26.31) WILD-TYPE" 
                    TCGA-BR-8296                     TCGA-BR-8297 
"DEL PEAK  9(3Q26.31) WILD-TYPE" "DEL PEAK  9(3Q26.31) WILD-TYPE" 
                    TCGA-CD-5798                     TCGA-CD-5799 
"DEL PEAK  9(3Q26.31) WILD-TYPE" "DEL PEAK  9(3Q26.31) WILD-TYPE" 
                    TCGA-CD-5800                     TCGA-CD-5801 
"DEL PEAK  9(3Q26.31) WILD-TYPE" "DEL PEAK  9(3Q26.31) WILD-TYPE" 
                    TCGA-CD-5802                     TCGA-CD-5803 
"DEL PEAK  9(3Q26.31) WILD-TYPE" "DEL PEAK  9(3Q26.31) WILD-TYPE" 
                    TCGA-CG-4300                     TCGA-CG-4301 
"DEL PEAK  9(3Q26.31) WILD-TYPE" "DEL PEAK  9(3Q26.31) WILD-TYPE" 
                    TCGA-CG-4304                     TCGA-CG-4305 
"DEL PEAK  9(3Q26.31) WILD-TYPE" "DEL PEAK  9(3Q26.31) WILD-TYPE" 
                    TCGA-CG-4306                     TCGA-CG-4436 
"DEL PEAK  9(3Q26.31) WILD-TYPE" "DEL PEAK  9(3Q26.31) WILD-TYPE" 
                    TCGA-CG-4437                     TCGA-CG-4438 
"DEL PEAK  9(3Q26.31) WILD-TYPE"   "DEL PEAK  9(3Q26.31) MUTATED" 
                    TCGA-CG-4440                     TCGA-CG-4441 
"DEL PEAK  9(3Q26.31) WILD-TYPE"   "DEL PEAK  9(3Q26.31) MUTATED" 
                    TCGA-CG-4443                     TCGA-CG-4444 
"DEL PEAK  9(3Q26.31) WILD-TYPE" "DEL PEAK  9(3Q26.31) WILD-TYPE" 
                    TCGA-CG-4449                     TCGA-CG-4455 
"DEL PEAK  9(3Q26.31) WILD-TYPE" "DEL PEAK  9(3Q26.31) WILD-TYPE" 
                    TCGA-CG-4460                     TCGA-CG-4462 
"DEL PEAK  9(3Q26.31) WILD-TYPE" "DEL PEAK  9(3Q26.31) WILD-TYPE" 
                    TCGA-CG-4465                     TCGA-CG-4466 
"DEL PEAK  9(3Q26.31) WILD-TYPE"   "DEL PEAK  9(3Q26.31) MUTATED" 
                    TCGA-CG-4469                     TCGA-CG-4472 
"DEL PEAK  9(3Q26.31) WILD-TYPE" "DEL PEAK  9(3Q26.31) WILD-TYPE" 
                    TCGA-CG-4474                     TCGA-CG-4477 
"DEL PEAK  9(3Q26.31) WILD-TYPE" "DEL PEAK  9(3Q26.31) WILD-TYPE" 
                    TCGA-CG-5716                     TCGA-CG-5717 
"DEL PEAK  9(3Q26.31) WILD-TYPE" "DEL PEAK  9(3Q26.31) WILD-TYPE" 
                    TCGA-CG-5718                     TCGA-CG-5719 
"DEL PEAK  9(3Q26.31) WILD-TYPE" "DEL PEAK  9(3Q26.31) WILD-TYPE" 
                    TCGA-CG-5720                     TCGA-CG-5721 
"DEL PEAK  9(3Q26.31) WILD-TYPE" "DEL PEAK  9(3Q26.31) WILD-TYPE" 
                    TCGA-CG-5722                     TCGA-CG-5723 
"DEL PEAK  9(3Q26.31) WILD-TYPE" "DEL PEAK  9(3Q26.31) WILD-TYPE" 
                    TCGA-CG-5724                     TCGA-CG-5725 
"DEL PEAK  9(3Q26.31) WILD-TYPE" "DEL PEAK  9(3Q26.31) WILD-TYPE" 
                    TCGA-CG-5726                     TCGA-CG-5727 
"DEL PEAK  9(3Q26.31) WILD-TYPE" "DEL PEAK  9(3Q26.31) WILD-TYPE" 
                    TCGA-CG-5728                     TCGA-CG-5730 
"DEL PEAK  9(3Q26.31) WILD-TYPE" "DEL PEAK  9(3Q26.31) WILD-TYPE" 
                    TCGA-CG-5732                     TCGA-CG-5733 
"DEL PEAK  9(3Q26.31) WILD-TYPE" "DEL PEAK  9(3Q26.31) WILD-TYPE" 
                    TCGA-CG-5734                     TCGA-D7-5577 
"DEL PEAK  9(3Q26.31) WILD-TYPE" "DEL PEAK  9(3Q26.31) WILD-TYPE" 
                    TCGA-D7-5578                     TCGA-D7-5579 
  "DEL PEAK  9(3Q26.31) MUTATED" "DEL PEAK  9(3Q26.31) WILD-TYPE" 
                    TCGA-D7-6518                     TCGA-D7-6519 
"DEL PEAK  9(3Q26.31) WILD-TYPE" "DEL PEAK  9(3Q26.31) WILD-TYPE" 
                    TCGA-D7-6520                     TCGA-D7-6521 
"DEL PEAK  9(3Q26.31) WILD-TYPE" "DEL PEAK  9(3Q26.31) WILD-TYPE" 
                    TCGA-D7-6522                     TCGA-D7-6524 
"DEL PEAK  9(3Q26.31) WILD-TYPE" "DEL PEAK  9(3Q26.31) WILD-TYPE" 
                    TCGA-D7-6525                     TCGA-D7-6526 
"DEL PEAK  9(3Q26.31) WILD-TYPE"   "DEL PEAK  9(3Q26.31) MUTATED" 
                    TCGA-D7-6527                     TCGA-D7-6528 
"DEL PEAK  9(3Q26.31) WILD-TYPE" "DEL PEAK  9(3Q26.31) WILD-TYPE" 
                    TCGA-D7-6815                     TCGA-D7-6817 
"DEL PEAK  9(3Q26.31) WILD-TYPE" "DEL PEAK  9(3Q26.31) WILD-TYPE" 
                    TCGA-D7-6818                     TCGA-D7-6820 
"DEL PEAK  9(3Q26.31) WILD-TYPE" "DEL PEAK  9(3Q26.31) WILD-TYPE" 
                    TCGA-D7-6822                     TCGA-EQ-5647 
"DEL PEAK  9(3Q26.31) WILD-TYPE" "DEL PEAK  9(3Q26.31) WILD-TYPE" 
                    TCGA-EQ-8122                     TCGA-F1-6177 
"DEL PEAK  9(3Q26.31) WILD-TYPE" "DEL PEAK  9(3Q26.31) WILD-TYPE" 
                    TCGA-F1-6874                     TCGA-F1-6875 
"DEL PEAK  9(3Q26.31) WILD-TYPE" "DEL PEAK  9(3Q26.31) WILD-TYPE" 
                    TCGA-FP-7735                     TCGA-FP-7829 
"DEL PEAK  9(3Q26.31) WILD-TYPE" "DEL PEAK  9(3Q26.31) WILD-TYPE" 
                    TCGA-FP-7916                     TCGA-FP-7998 
"DEL PEAK  9(3Q26.31) WILD-TYPE" "DEL PEAK  9(3Q26.31) WILD-TYPE" 
                    TCGA-HJ-7597                     TCGA-IN-7806 
"DEL PEAK  9(3Q26.31) WILD-TYPE"   "DEL PEAK  9(3Q26.31) MUTATED" 
                    TCGA-IN-7808                     TCGA-IP-7968 
"DEL PEAK  9(3Q26.31) WILD-TYPE" "DEL PEAK  9(3Q26.31) WILD-TYPE" 
                    TCGA-B7-5816                     TCGA-B7-5818 
"DEL PEAK  9(3Q26.31) WILD-TYPE" "DEL PEAK  9(3Q26.31) WILD-TYPE" 
                    TCGA-BR-6452                     TCGA-BR-6455 
"DEL PEAK  9(3Q26.31) WILD-TYPE" "DEL PEAK  9(3Q26.31) WILD-TYPE" 
                    TCGA-BR-6457                     TCGA-BR-6458 
"DEL PEAK  9(3Q26.31) WILD-TYPE"   "DEL PEAK  9(3Q26.31) MUTATED" 
                    TCGA-BR-6563                     TCGA-BR-6564 
"DEL PEAK  9(3Q26.31) WILD-TYPE" "DEL PEAK  9(3Q26.31) WILD-TYPE" 
                    TCGA-BR-6565                     TCGA-BR-6566 
  "DEL PEAK  9(3Q26.31) MUTATED" "DEL PEAK  9(3Q26.31) WILD-TYPE" 
                    TCGA-BR-6705                     TCGA-BR-6706 
"DEL PEAK  9(3Q26.31) WILD-TYPE" "DEL PEAK  9(3Q26.31) WILD-TYPE" 
                    TCGA-BR-6707                     TCGA-BR-6709 
"DEL PEAK  9(3Q26.31) WILD-TYPE" "DEL PEAK  9(3Q26.31) WILD-TYPE" 
                    TCGA-BR-6710                     TCGA-BR-6801 
"DEL PEAK  9(3Q26.31) WILD-TYPE" "DEL PEAK  9(3Q26.31) WILD-TYPE" 
                    TCGA-BR-6802                     TCGA-BR-6803 
"DEL PEAK  9(3Q26.31) WILD-TYPE" "DEL PEAK  9(3Q26.31) WILD-TYPE" 
                    TCGA-BR-6852                     TCGA-BR-7196 
"DEL PEAK  9(3Q26.31) WILD-TYPE" "DEL PEAK  9(3Q26.31) WILD-TYPE" 
                    TCGA-BR-7197                     TCGA-BR-7703 
"DEL PEAK  9(3Q26.31) WILD-TYPE" "DEL PEAK  9(3Q26.31) WILD-TYPE" 
                    TCGA-BR-7704                     TCGA-BR-7707 
"DEL PEAK  9(3Q26.31) WILD-TYPE" "DEL PEAK  9(3Q26.31) WILD-TYPE" 
                    TCGA-BR-7715                     TCGA-BR-7716 
  "DEL PEAK  9(3Q26.31) MUTATED" "DEL PEAK  9(3Q26.31) WILD-TYPE" 
                    TCGA-BR-7717                     TCGA-BR-7722 
"DEL PEAK  9(3Q26.31) WILD-TYPE" "DEL PEAK  9(3Q26.31) WILD-TYPE" 
                    TCGA-BR-7723                     TCGA-BR-7851 
"DEL PEAK  9(3Q26.31) WILD-TYPE" "DEL PEAK  9(3Q26.31) WILD-TYPE" 
                    TCGA-BR-7901                     TCGA-BR-7957 
"DEL PEAK  9(3Q26.31) WILD-TYPE" "DEL PEAK  9(3Q26.31) WILD-TYPE" 
                    TCGA-BR-7958                     TCGA-BR-7959 
"DEL PEAK  9(3Q26.31) WILD-TYPE" "DEL PEAK  9(3Q26.31) WILD-TYPE" 
                    TCGA-BR-8059                     TCGA-BR-8060 
"DEL PEAK  9(3Q26.31) WILD-TYPE" "DEL PEAK  9(3Q26.31) WILD-TYPE" 
                    TCGA-BR-8077                     TCGA-BR-8078 
"DEL PEAK  9(3Q26.31) WILD-TYPE" "DEL PEAK  9(3Q26.31) WILD-TYPE" 
                    TCGA-BR-8080                     TCGA-BR-8081 
"DEL PEAK  9(3Q26.31) WILD-TYPE" "DEL PEAK  9(3Q26.31) WILD-TYPE" 
                    TCGA-BR-8284                     TCGA-BR-8285 
"DEL PEAK  9(3Q26.31) WILD-TYPE" "DEL PEAK  9(3Q26.31) WILD-TYPE" 
                    TCGA-BR-8286                     TCGA-BR-8289 
"DEL PEAK  9(3Q26.31) WILD-TYPE" "DEL PEAK  9(3Q26.31) WILD-TYPE" 
                    TCGA-BR-8291                     TCGA-BR-8295 
"DEL PEAK  9(3Q26.31) WILD-TYPE" "DEL PEAK  9(3Q26.31) WILD-TYPE" 
                    TCGA-BR-8296                     TCGA-BR-8297 
"DEL PEAK  9(3Q26.31) WILD-TYPE" "DEL PEAK  9(3Q26.31) WILD-TYPE" 
                    TCGA-CD-5798                     TCGA-CD-5799 
"DEL PEAK  9(3Q26.31) WILD-TYPE" "DEL PEAK  9(3Q26.31) WILD-TYPE" 
                    TCGA-CD-5800                     TCGA-CD-5801 
"DEL PEAK  9(3Q26.31) WILD-TYPE" "DEL PEAK  9(3Q26.31) WILD-TYPE" 
                    TCGA-CD-5802                     TCGA-CD-5803 
"DEL PEAK  9(3Q26.31) WILD-TYPE" "DEL PEAK  9(3Q26.31) WILD-TYPE" 
                    TCGA-CG-4300                     TCGA-CG-4301 
"DEL PEAK  9(3Q26.31) WILD-TYPE" "DEL PEAK  9(3Q26.31) WILD-TYPE" 
                    TCGA-CG-4304                     TCGA-CG-4305 
"DEL PEAK  9(3Q26.31) WILD-TYPE" "DEL PEAK  9(3Q26.31) WILD-TYPE" 
                    TCGA-CG-4306                     TCGA-CG-4436 
"DEL PEAK  9(3Q26.31) WILD-TYPE" "DEL PEAK  9(3Q26.31) WILD-TYPE" 
                    TCGA-CG-4437                     TCGA-CG-4438 
"DEL PEAK  9(3Q26.31) WILD-TYPE"   "DEL PEAK  9(3Q26.31) MUTATED" 
                    TCGA-CG-4440                     TCGA-CG-4441 
"DEL PEAK  9(3Q26.31) WILD-TYPE"   "DEL PEAK  9(3Q26.31) MUTATED" 
                    TCGA-CG-4443                     TCGA-CG-4444 
"DEL PEAK  9(3Q26.31) WILD-TYPE" "DEL PEAK  9(3Q26.31) WILD-TYPE" 
                    TCGA-CG-4449                     TCGA-CG-4455 
"DEL PEAK  9(3Q26.31) WILD-TYPE" "DEL PEAK  9(3Q26.31) WILD-TYPE" 
                    TCGA-CG-4460                     TCGA-CG-4462 
"DEL PEAK  9(3Q26.31) WILD-TYPE" "DEL PEAK  9(3Q26.31) WILD-TYPE" 
                    TCGA-CG-4465                     TCGA-CG-4466 
"DEL PEAK  9(3Q26.31) WILD-TYPE"   "DEL PEAK  9(3Q26.31) MUTATED" 
                    TCGA-CG-4469                     TCGA-CG-4472 
"DEL PEAK  9(3Q26.31) WILD-TYPE" "DEL PEAK  9(3Q26.31) WILD-TYPE" 
                    TCGA-CG-4474                     TCGA-CG-4477 
"DEL PEAK  9(3Q26.31) WILD-TYPE" "DEL PEAK  9(3Q26.31) WILD-TYPE" 
                    TCGA-CG-5716                     TCGA-CG-5717 
"DEL PEAK  9(3Q26.31) WILD-TYPE" "DEL PEAK  9(3Q26.31) WILD-TYPE" 
                    TCGA-CG-5718                     TCGA-CG-5719 
"DEL PEAK  9(3Q26.31) WILD-TYPE" "DEL PEAK  9(3Q26.31) WILD-TYPE" 
                    TCGA-CG-5720                     TCGA-CG-5721 
"DEL PEAK  9(3Q26.31) WILD-TYPE" "DEL PEAK  9(3Q26.31) WILD-TYPE" 
                    TCGA-CG-5722                     TCGA-CG-5723 
"DEL PEAK  9(3Q26.31) WILD-TYPE" "DEL PEAK  9(3Q26.31) WILD-TYPE" 
                    TCGA-CG-5724                     TCGA-CG-5725 
"DEL PEAK  9(3Q26.31) WILD-TYPE" "DEL PEAK  9(3Q26.31) WILD-TYPE" 
                    TCGA-CG-5726                     TCGA-CG-5727 
"DEL PEAK  9(3Q26.31) WILD-TYPE" "DEL PEAK  9(3Q26.31) WILD-TYPE" 
                    TCGA-CG-5728                     TCGA-CG-5730 
"DEL PEAK  9(3Q26.31) WILD-TYPE" "DEL PEAK  9(3Q26.31) WILD-TYPE" 
                    TCGA-CG-5732                     TCGA-CG-5733 
"DEL PEAK  9(3Q26.31) WILD-TYPE" "DEL PEAK  9(3Q26.31) WILD-TYPE" 
                    TCGA-CG-5734                     TCGA-D7-5577 
"DEL PEAK  9(3Q26.31) WILD-TYPE" "DEL PEAK  9(3Q26.31) WILD-TYPE" 
                    TCGA-D7-5578                     TCGA-D7-5579 
  "DEL PEAK  9(3Q26.31) MUTATED" "DEL PEAK  9(3Q26.31) WILD-TYPE" 
                    TCGA-D7-6518                     TCGA-D7-6519 
"DEL PEAK  9(3Q26.31) WILD-TYPE" "DEL PEAK  9(3Q26.31) WILD-TYPE" 
                    TCGA-D7-6520                     TCGA-D7-6521 
"DEL PEAK  9(3Q26.31) WILD-TYPE" "DEL PEAK  9(3Q26.31) WILD-TYPE" 
                    TCGA-D7-6522                     TCGA-D7-6524 
"DEL PEAK  9(3Q26.31) WILD-TYPE" "DEL PEAK  9(3Q26.31) WILD-TYPE" 
                    TCGA-D7-6525                     TCGA-D7-6526 
"DEL PEAK  9(3Q26.31) WILD-TYPE"   "DEL PEAK  9(3Q26.31) MUTATED" 
                    TCGA-D7-6527                     TCGA-D7-6528 
"DEL PEAK  9(3Q26.31) WILD-TYPE" "DEL PEAK  9(3Q26.31) WILD-TYPE" 
                    TCGA-D7-6815                     TCGA-D7-6817 
"DEL PEAK  9(3Q26.31) WILD-TYPE" "DEL PEAK  9(3Q26.31) WILD-TYPE" 
                    TCGA-D7-6818                     TCGA-D7-6820 
"DEL PEAK  9(3Q26.31) WILD-TYPE" "DEL PEAK  9(3Q26.31) WILD-TYPE" 
                    TCGA-D7-6822                     TCGA-EQ-5647 
"DEL PEAK  9(3Q26.31) WILD-TYPE" "DEL PEAK  9(3Q26.31) WILD-TYPE" 
                    TCGA-EQ-8122                     TCGA-F1-6177 
"DEL PEAK  9(3Q26.31) WILD-TYPE" "DEL PEAK  9(3Q26.31) WILD-TYPE" 
                    TCGA-F1-6874                     TCGA-F1-6875 
"DEL PEAK  9(3Q26.31) WILD-TYPE" "DEL PEAK  9(3Q26.31) WILD-TYPE" 
                    TCGA-FP-7735                     TCGA-FP-7829 
"DEL PEAK  9(3Q26.31) WILD-TYPE" "DEL PEAK  9(3Q26.31) WILD-TYPE" 
                    TCGA-FP-7916                     TCGA-FP-7998 
"DEL PEAK  9(3Q26.31) WILD-TYPE" "DEL PEAK  9(3Q26.31) WILD-TYPE" 
                    TCGA-HJ-7597                     TCGA-IN-7806 
"DEL PEAK  9(3Q26.31) WILD-TYPE"   "DEL PEAK  9(3Q26.31) MUTATED" 
                    TCGA-IN-7808                     TCGA-IP-7968 
"DEL PEAK  9(3Q26.31) WILD-TYPE" "DEL PEAK  9(3Q26.31) WILD-TYPE" 
                    TCGA-B7-5816                     TCGA-B7-5818 
"DEL PEAK  9(3Q26.31) WILD-TYPE" "DEL PEAK  9(3Q26.31) WILD-TYPE" 
                    TCGA-BR-6452                     TCGA-BR-6455 
"DEL PEAK  9(3Q26.31) WILD-TYPE" "DEL PEAK  9(3Q26.31) WILD-TYPE" 
                    TCGA-BR-6457                     TCGA-BR-6458 
"DEL PEAK  9(3Q26.31) WILD-TYPE"   "DEL PEAK  9(3Q26.31) MUTATED" 
                    TCGA-BR-6563                     TCGA-BR-6564 
"DEL PEAK  9(3Q26.31) WILD-TYPE" "DEL PEAK  9(3Q26.31) WILD-TYPE" 
                    TCGA-BR-6565                     TCGA-BR-6566 
  "DEL PEAK  9(3Q26.31) MUTATED" "DEL PEAK  9(3Q26.31) WILD-TYPE" 
                    TCGA-BR-6705                     TCGA-BR-6706 
"DEL PEAK  9(3Q26.31) WILD-TYPE" "DEL PEAK  9(3Q26.31) WILD-TYPE" 
                    TCGA-BR-6707                     TCGA-BR-6709 
"DEL PEAK  9(3Q26.31) WILD-TYPE" "DEL PEAK  9(3Q26.31) WILD-TYPE" 
                    TCGA-BR-6710                     TCGA-BR-6801 
"DEL PEAK  9(3Q26.31) WILD-TYPE" "DEL PEAK  9(3Q26.31) WILD-TYPE" 
                    TCGA-BR-6802                     TCGA-BR-6803 
"DEL PEAK  9(3Q26.31) WILD-TYPE" "DEL PEAK  9(3Q26.31) WILD-TYPE" 
                    TCGA-BR-6852                     TCGA-BR-7196 
"DEL PEAK  9(3Q26.31) WILD-TYPE" "DEL PEAK  9(3Q26.31) WILD-TYPE" 
                    TCGA-BR-7197                     TCGA-BR-7703 
"DEL PEAK  9(3Q26.31) WILD-TYPE" "DEL PEAK  9(3Q26.31) WILD-TYPE" 
                    TCGA-BR-7704                     TCGA-BR-7707 
"DEL PEAK  9(3Q26.31) WILD-TYPE" "DEL PEAK  9(3Q26.31) WILD-TYPE" 
                    TCGA-BR-7715                     TCGA-BR-7716 
  "DEL PEAK  9(3Q26.31) MUTATED" "DEL PEAK  9(3Q26.31) WILD-TYPE" 
                    TCGA-BR-7717                     TCGA-BR-7722 
"DEL PEAK  9(3Q26.31) WILD-TYPE" "DEL PEAK  9(3Q26.31) WILD-TYPE" 
                    TCGA-BR-7723                     TCGA-BR-7851 
"DEL PEAK  9(3Q26.31) WILD-TYPE" "DEL PEAK  9(3Q26.31) WILD-TYPE" 
                    TCGA-BR-7901                     TCGA-BR-7957 
"DEL PEAK  9(3Q26.31) WILD-TYPE" "DEL PEAK  9(3Q26.31) WILD-TYPE" 
                    TCGA-BR-7958                     TCGA-BR-7959 
"DEL PEAK  9(3Q26.31) WILD-TYPE" "DEL PEAK  9(3Q26.31) WILD-TYPE" 
                    TCGA-BR-8059                     TCGA-BR-8060 
"DEL PEAK  9(3Q26.31) WILD-TYPE" "DEL PEAK  9(3Q26.31) WILD-TYPE" 
                    TCGA-BR-8077                     TCGA-BR-8078 
"DEL PEAK  9(3Q26.31) WILD-TYPE" "DEL PEAK  9(3Q26.31) WILD-TYPE" 
                    TCGA-BR-8080                     TCGA-BR-8081 
"DEL PEAK  9(3Q26.31) WILD-TYPE" "DEL PEAK  9(3Q26.31) WILD-TYPE" 
                    TCGA-BR-8284                     TCGA-BR-8285 
"DEL PEAK  9(3Q26.31) WILD-TYPE" "DEL PEAK  9(3Q26.31) WILD-TYPE" 
                    TCGA-BR-8286                     TCGA-BR-8289 
"DEL PEAK  9(3Q26.31) WILD-TYPE" "DEL PEAK  9(3Q26.31) WILD-TYPE" 
                    TCGA-BR-8291                     TCGA-BR-8295 
"DEL PEAK  9(3Q26.31) WILD-TYPE" "DEL PEAK  9(3Q26.31) WILD-TYPE" 
                    TCGA-BR-8296                     TCGA-BR-8297 
"DEL PEAK  9(3Q26.31) WILD-TYPE" "DEL PEAK  9(3Q26.31) WILD-TYPE" 
                    TCGA-CD-5798                     TCGA-CD-5799 
"DEL PEAK  9(3Q26.31) WILD-TYPE" "DEL PEAK  9(3Q26.31) WILD-TYPE" 
                    TCGA-CD-5800                     TCGA-CD-5801 
"DEL PEAK  9(3Q26.31) WILD-TYPE" "DEL PEAK  9(3Q26.31) WILD-TYPE" 
                    TCGA-CD-5802                     TCGA-CD-5803 
"DEL PEAK  9(3Q26.31) WILD-TYPE" "DEL PEAK  9(3Q26.31) WILD-TYPE" 
                    TCGA-CG-4300                     TCGA-CG-4301 
"DEL PEAK  9(3Q26.31) WILD-TYPE" "DEL PEAK  9(3Q26.31) WILD-TYPE" 
                    TCGA-CG-4304                     TCGA-CG-4305 
"DEL PEAK  9(3Q26.31) WILD-TYPE" "DEL PEAK  9(3Q26.31) WILD-TYPE" 
                    TCGA-CG-4306                     TCGA-CG-4436 
"DEL PEAK  9(3Q26.31) WILD-TYPE" "DEL PEAK  9(3Q26.31) WILD-TYPE" 
                    TCGA-CG-4437                     TCGA-CG-4438 
"DEL PEAK  9(3Q26.31) WILD-TYPE"   "DEL PEAK  9(3Q26.31) MUTATED" 
                    TCGA-CG-4440                     TCGA-CG-4441 
"DEL PEAK  9(3Q26.31) WILD-TYPE"   "DEL PEAK  9(3Q26.31) MUTATED" 
                    TCGA-CG-4443                     TCGA-CG-4444 
"DEL PEAK  9(3Q26.31) WILD-TYPE" "DEL PEAK  9(3Q26.31) WILD-TYPE" 
                    TCGA-CG-4449                     TCGA-CG-4455 
"DEL PEAK  9(3Q26.31) WILD-TYPE" "DEL PEAK  9(3Q26.31) WILD-TYPE" 
                    TCGA-CG-4460                     TCGA-CG-4462 
"DEL PEAK  9(3Q26.31) WILD-TYPE" "DEL PEAK  9(3Q26.31) WILD-TYPE" 
                    TCGA-CG-4465                     TCGA-CG-4466 
"DEL PEAK  9(3Q26.31) WILD-TYPE"   "DEL PEAK  9(3Q26.31) MUTATED" 
                    TCGA-CG-4469                     TCGA-CG-4472 
"DEL PEAK  9(3Q26.31) WILD-TYPE" "DEL PEAK  9(3Q26.31) WILD-TYPE" 
                    TCGA-CG-4474                     TCGA-CG-4477 
"DEL PEAK  9(3Q26.31) WILD-TYPE" "DEL PEAK  9(3Q26.31) WILD-TYPE" 
                    TCGA-CG-5716                     TCGA-CG-5717 
"DEL PEAK  9(3Q26.31) WILD-TYPE" "DEL PEAK  9(3Q26.31) WILD-TYPE" 
                    TCGA-CG-5718                     TCGA-CG-5719 
"DEL PEAK  9(3Q26.31) WILD-TYPE" "DEL PEAK  9(3Q26.31) WILD-TYPE" 
                    TCGA-CG-5720                     TCGA-CG-5721 
"DEL PEAK  9(3Q26.31) WILD-TYPE" "DEL PEAK  9(3Q26.31) WILD-TYPE" 
                    TCGA-CG-5722                     TCGA-CG-5723 
"DEL PEAK  9(3Q26.31) WILD-TYPE" "DEL PEAK  9(3Q26.31) WILD-TYPE" 
                    TCGA-CG-5724                     TCGA-CG-5725 
"DEL PEAK  9(3Q26.31) WILD-TYPE" "DEL PEAK  9(3Q26.31) WILD-TYPE" 
                    TCGA-CG-5726                     TCGA-CG-5727 
"DEL PEAK  9(3Q26.31) WILD-TYPE" "DEL PEAK  9(3Q26.31) WILD-TYPE" 
                    TCGA-CG-5728                     TCGA-CG-5730 
"DEL PEAK  9(3Q26.31) WILD-TYPE" "DEL PEAK  9(3Q26.31) WILD-TYPE" 
                    TCGA-CG-5732                     TCGA-CG-5733 
"DEL PEAK  9(3Q26.31) WILD-TYPE" "DEL PEAK  9(3Q26.31) WILD-TYPE" 
                    TCGA-CG-5734                     TCGA-D7-5577 
"DEL PEAK  9(3Q26.31) WILD-TYPE" "DEL PEAK  9(3Q26.31) WILD-TYPE" 
                    TCGA-D7-5578                     TCGA-D7-5579 
  "DEL PEAK  9(3Q26.31) MUTATED" "DEL PEAK  9(3Q26.31) WILD-TYPE" 
                    TCGA-D7-6518                     TCGA-D7-6519 
"DEL PEAK  9(3Q26.31) WILD-TYPE" "DEL PEAK  9(3Q26.31) WILD-TYPE" 
                    TCGA-D7-6520                     TCGA-D7-6521 
"DEL PEAK  9(3Q26.31) WILD-TYPE" "DEL PEAK  9(3Q26.31) WILD-TYPE" 
                    TCGA-D7-6522                     TCGA-D7-6524 
"DEL PEAK  9(3Q26.31) WILD-TYPE" "DEL PEAK  9(3Q26.31) WILD-TYPE" 
                    TCGA-D7-6525                     TCGA-D7-6526 
"DEL PEAK  9(3Q26.31) WILD-TYPE"   "DEL PEAK  9(3Q26.31) MUTATED" 
                    TCGA-D7-6527                     TCGA-D7-6528 
"DEL PEAK  9(3Q26.31) WILD-TYPE" "DEL PEAK  9(3Q26.31) WILD-TYPE" 
                    TCGA-D7-6815                     TCGA-D7-6817 
"DEL PEAK  9(3Q26.31) WILD-TYPE" "DEL PEAK  9(3Q26.31) WILD-TYPE" 
                    TCGA-D7-6818                     TCGA-D7-6820 
"DEL PEAK  9(3Q26.31) WILD-TYPE" "DEL PEAK  9(3Q26.31) WILD-TYPE" 
                    TCGA-D7-6822                     TCGA-EQ-5647 
"DEL PEAK  9(3Q26.31) WILD-TYPE" "DEL PEAK  9(3Q26.31) WILD-TYPE" 
                    TCGA-EQ-8122                     TCGA-F1-6177 
"DEL PEAK  9(3Q26.31) WILD-TYPE" "DEL PEAK  9(3Q26.31) WILD-TYPE" 
                    TCGA-F1-6874                     TCGA-F1-6875 
"DEL PEAK  9(3Q26.31) WILD-TYPE" "DEL PEAK  9(3Q26.31) WILD-TYPE" 
                    TCGA-FP-7735                     TCGA-FP-7829 
"DEL PEAK  9(3Q26.31) WILD-TYPE" "DEL PEAK  9(3Q26.31) WILD-TYPE" 
                    TCGA-FP-7916                     TCGA-FP-7998 
"DEL PEAK  9(3Q26.31) WILD-TYPE" "DEL PEAK  9(3Q26.31) WILD-TYPE" 
                    TCGA-HJ-7597                     TCGA-IN-7806 
"DEL PEAK  9(3Q26.31) WILD-TYPE"   "DEL PEAK  9(3Q26.31) MUTATED" 
                    TCGA-IN-7808                     TCGA-IP-7968 
"DEL PEAK  9(3Q26.31) WILD-TYPE" "DEL PEAK  9(3Q26.31) WILD-TYPE" 
[1] "hr=" "1.5"
D35V2, continuous
D35V3, binary
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  DEL PEAK  9(3Q26.31) MUTATED      5    8
  DEL PEAK  9(3Q26.31) WILD-TYPE   60   88
        clus
vv       DEL PEAK  9(3Q26.31) MUTATED DEL PEAK  9(3Q26.31) WILD-TYPE
  FEMALE                            5                             60
  MALE                              8                             88
D35V4, multiclass
D35V5, multiclass
    clus
vv   DEL PEAK  9(3Q26.31) MUTATED DEL PEAK  9(3Q26.31) WILD-TYPE
  T1                            0                              6
  T2                            3                             50
  T3                            7                             52
  T4                            1                             32
D35V6, multiclass
    clus
vv   DEL PEAK  9(3Q26.31) MUTATED DEL PEAK  9(3Q26.31) WILD-TYPE
  N0                            4                             46
  N1                            3                             54
  N2                            4                             20
  N3                            0                             19
D35V7, multiclass
    clus
vv   DEL PEAK  9(3Q26.31) MUTATED DEL PEAK  9(3Q26.31) WILD-TYPE
  M0                           11                            121
  M1                            0                             18
  MX                            2                              9
D35V8, multiclass
     clus
vv    DEL PEAK  9(3Q26.31) MUTATED DEL PEAK  9(3Q26.31) WILD-TYPE
  I                              2                             23
  II                             4                             39
  III                            3                             45
  IV                             1                             28
D35V9, binary
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  DEL PEAK  9(3Q26.31) MUTATED     12    1
  DEL PEAK  9(3Q26.31) WILD-TYPE  144    4
     clus
vv    DEL PEAK  9(3Q26.31) MUTATED DEL PEAK  9(3Q26.31) WILD-TYPE
  NO                             1                              4
  YES                           12                            144

Clustering(36) Variable = Del Peak 10(4p16.3) mutation analysis
D36V1, survival
                   TCGA-B7-5816                    TCGA-B7-5818 
"DEL PEAK 10(4P16.3) WILD-TYPE" "DEL PEAK 10(4P16.3) WILD-TYPE" 
                   TCGA-BR-6452                    TCGA-BR-6455 
"DEL PEAK 10(4P16.3) WILD-TYPE" "DEL PEAK 10(4P16.3) WILD-TYPE" 
                   TCGA-BR-6457                    TCGA-BR-6458 
"DEL PEAK 10(4P16.3) WILD-TYPE" "DEL PEAK 10(4P16.3) WILD-TYPE" 
                   TCGA-BR-6563                    TCGA-BR-6564 
"DEL PEAK 10(4P16.3) WILD-TYPE" "DEL PEAK 10(4P16.3) WILD-TYPE" 
                   TCGA-BR-6565                    TCGA-BR-6566 
  "DEL PEAK 10(4P16.3) MUTATED" "DEL PEAK 10(4P16.3) WILD-TYPE" 
                   TCGA-BR-6705                    TCGA-BR-6706 
"DEL PEAK 10(4P16.3) WILD-TYPE" "DEL PEAK 10(4P16.3) WILD-TYPE" 
                   TCGA-BR-6707                    TCGA-BR-6709 
"DEL PEAK 10(4P16.3) WILD-TYPE" "DEL PEAK 10(4P16.3) WILD-TYPE" 
                   TCGA-BR-6710                    TCGA-BR-6801 
"DEL PEAK 10(4P16.3) WILD-TYPE" "DEL PEAK 10(4P16.3) WILD-TYPE" 
                   TCGA-BR-6802                    TCGA-BR-6803 
"DEL PEAK 10(4P16.3) WILD-TYPE"   "DEL PEAK 10(4P16.3) MUTATED" 
                   TCGA-BR-6852                    TCGA-BR-7196 
"DEL PEAK 10(4P16.3) WILD-TYPE" "DEL PEAK 10(4P16.3) WILD-TYPE" 
                   TCGA-BR-7197                    TCGA-BR-7703 
  "DEL PEAK 10(4P16.3) MUTATED"   "DEL PEAK 10(4P16.3) MUTATED" 
                   TCGA-BR-7704                    TCGA-BR-7707 
"DEL PEAK 10(4P16.3) WILD-TYPE" "DEL PEAK 10(4P16.3) WILD-TYPE" 
                   TCGA-BR-7715                    TCGA-BR-7716 
  "DEL PEAK 10(4P16.3) MUTATED"   "DEL PEAK 10(4P16.3) MUTATED" 
                   TCGA-BR-7717                    TCGA-BR-7722 
  "DEL PEAK 10(4P16.3) MUTATED" "DEL PEAK 10(4P16.3) WILD-TYPE" 
                   TCGA-BR-7723                    TCGA-BR-7851 
  "DEL PEAK 10(4P16.3) MUTATED" "DEL PEAK 10(4P16.3) WILD-TYPE" 
                   TCGA-BR-7901                    TCGA-BR-7957 
  "DEL PEAK 10(4P16.3) MUTATED"   "DEL PEAK 10(4P16.3) MUTATED" 
                   TCGA-BR-7958                    TCGA-BR-7959 
"DEL PEAK 10(4P16.3) WILD-TYPE" "DEL PEAK 10(4P16.3) WILD-TYPE" 
                   TCGA-BR-8059                    TCGA-BR-8060 
"DEL PEAK 10(4P16.3) WILD-TYPE" "DEL PEAK 10(4P16.3) WILD-TYPE" 
                   TCGA-BR-8077                    TCGA-BR-8078 
"DEL PEAK 10(4P16.3) WILD-TYPE" "DEL PEAK 10(4P16.3) WILD-TYPE" 
                   TCGA-BR-8080                    TCGA-BR-8081 
"DEL PEAK 10(4P16.3) WILD-TYPE" "DEL PEAK 10(4P16.3) WILD-TYPE" 
                   TCGA-BR-8284                    TCGA-BR-8285 
"DEL PEAK 10(4P16.3) WILD-TYPE" "DEL PEAK 10(4P16.3) WILD-TYPE" 
                   TCGA-BR-8286                    TCGA-BR-8289 
"DEL PEAK 10(4P16.3) WILD-TYPE" "DEL PEAK 10(4P16.3) WILD-TYPE" 
                   TCGA-BR-8291                    TCGA-BR-8295 
"DEL PEAK 10(4P16.3) WILD-TYPE" "DEL PEAK 10(4P16.3) WILD-TYPE" 
                   TCGA-BR-8296                    TCGA-BR-8297 
"DEL PEAK 10(4P16.3) WILD-TYPE" "DEL PEAK 10(4P16.3) WILD-TYPE" 
                   TCGA-CD-5798                    TCGA-CD-5799 
"DEL PEAK 10(4P16.3) WILD-TYPE" "DEL PEAK 10(4P16.3) WILD-TYPE" 
                   TCGA-CD-5800                    TCGA-CD-5801 
"DEL PEAK 10(4P16.3) WILD-TYPE" "DEL PEAK 10(4P16.3) WILD-TYPE" 
                   TCGA-CD-5802                    TCGA-CD-5803 
  "DEL PEAK 10(4P16.3) MUTATED"   "DEL PEAK 10(4P16.3) MUTATED" 
                   TCGA-CG-4300                    TCGA-CG-4301 
  "DEL PEAK 10(4P16.3) MUTATED" "DEL PEAK 10(4P16.3) WILD-TYPE" 
                   TCGA-CG-4304                    TCGA-CG-4305 
"DEL PEAK 10(4P16.3) WILD-TYPE" "DEL PEAK 10(4P16.3) WILD-TYPE" 
                   TCGA-CG-4306                    TCGA-CG-4436 
"DEL PEAK 10(4P16.3) WILD-TYPE"   "DEL PEAK 10(4P16.3) MUTATED" 
                   TCGA-CG-4437                    TCGA-CG-4438 
  "DEL PEAK 10(4P16.3) MUTATED"   "DEL PEAK 10(4P16.3) MUTATED" 
                   TCGA-CG-4440                    TCGA-CG-4441 
  "DEL PEAK 10(4P16.3) MUTATED" "DEL PEAK 10(4P16.3) WILD-TYPE" 
                   TCGA-CG-4443                    TCGA-CG-4444 
"DEL PEAK 10(4P16.3) WILD-TYPE"   "DEL PEAK 10(4P16.3) MUTATED" 
                   TCGA-CG-4449                    TCGA-CG-4455 
  "DEL PEAK 10(4P16.3) MUTATED"   "DEL PEAK 10(4P16.3) MUTATED" 
                   TCGA-CG-4460                    TCGA-CG-4462 
"DEL PEAK 10(4P16.3) WILD-TYPE" "DEL PEAK 10(4P16.3) WILD-TYPE" 
                   TCGA-CG-4465                    TCGA-CG-4466 
"DEL PEAK 10(4P16.3) WILD-TYPE"   "DEL PEAK 10(4P16.3) MUTATED" 
                   TCGA-CG-4469                    TCGA-CG-4472 
  "DEL PEAK 10(4P16.3) MUTATED" "DEL PEAK 10(4P16.3) WILD-TYPE" 
                   TCGA-CG-4474                    TCGA-CG-4477 
"DEL PEAK 10(4P16.3) WILD-TYPE" "DEL PEAK 10(4P16.3) WILD-TYPE" 
                   TCGA-CG-5716                    TCGA-CG-5717 
"DEL PEAK 10(4P16.3) WILD-TYPE" "DEL PEAK 10(4P16.3) WILD-TYPE" 
                   TCGA-CG-5718                    TCGA-CG-5719 
"DEL PEAK 10(4P16.3) WILD-TYPE" "DEL PEAK 10(4P16.3) WILD-TYPE" 
                   TCGA-CG-5720                    TCGA-CG-5721 
"DEL PEAK 10(4P16.3) WILD-TYPE" "DEL PEAK 10(4P16.3) WILD-TYPE" 
                   TCGA-CG-5722                    TCGA-CG-5723 
"DEL PEAK 10(4P16.3) WILD-TYPE" "DEL PEAK 10(4P16.3) WILD-TYPE" 
                   TCGA-CG-5724                    TCGA-CG-5725 
"DEL PEAK 10(4P16.3) WILD-TYPE"   "DEL PEAK 10(4P16.3) MUTATED" 
                   TCGA-CG-5726                    TCGA-CG-5727 
"DEL PEAK 10(4P16.3) WILD-TYPE" "DEL PEAK 10(4P16.3) WILD-TYPE" 
                   TCGA-CG-5728                    TCGA-CG-5730 
"DEL PEAK 10(4P16.3) WILD-TYPE" "DEL PEAK 10(4P16.3) WILD-TYPE" 
                   TCGA-CG-5732                    TCGA-CG-5733 
"DEL PEAK 10(4P16.3) WILD-TYPE" "DEL PEAK 10(4P16.3) WILD-TYPE" 
                   TCGA-CG-5734                    TCGA-D7-5577 
"DEL PEAK 10(4P16.3) WILD-TYPE" "DEL PEAK 10(4P16.3) WILD-TYPE" 
                   TCGA-D7-5578                    TCGA-D7-5579 
"DEL PEAK 10(4P16.3) WILD-TYPE" "DEL PEAK 10(4P16.3) WILD-TYPE" 
                   TCGA-D7-6518                    TCGA-D7-6519 
  "DEL PEAK 10(4P16.3) MUTATED"   "DEL PEAK 10(4P16.3) MUTATED" 
                   TCGA-D7-6520                    TCGA-D7-6521 
  "DEL PEAK 10(4P16.3) MUTATED" "DEL PEAK 10(4P16.3) WILD-TYPE" 
                   TCGA-D7-6522                    TCGA-D7-6524 
"DEL PEAK 10(4P16.3) WILD-TYPE" "DEL PEAK 10(4P16.3) WILD-TYPE" 
                   TCGA-D7-6525                    TCGA-D7-6526 
"DEL PEAK 10(4P16.3) WILD-TYPE"   "DEL PEAK 10(4P16.3) MUTATED" 
                   TCGA-D7-6527                    TCGA-D7-6528 
  "DEL PEAK 10(4P16.3) MUTATED"   "DEL PEAK 10(4P16.3) MUTATED" 
                   TCGA-D7-6815                    TCGA-D7-6817 
"DEL PEAK 10(4P16.3) WILD-TYPE" "DEL PEAK 10(4P16.3) WILD-TYPE" 
                   TCGA-D7-6818                    TCGA-D7-6820 
"DEL PEAK 10(4P16.3) WILD-TYPE"   "DEL PEAK 10(4P16.3) MUTATED" 
                   TCGA-D7-6822                    TCGA-EQ-5647 
"DEL PEAK 10(4P16.3) WILD-TYPE" "DEL PEAK 10(4P16.3) WILD-TYPE" 
                   TCGA-EQ-8122                    TCGA-F1-6177 
  "DEL PEAK 10(4P16.3) MUTATED" "DEL PEAK 10(4P16.3) WILD-TYPE" 
                   TCGA-F1-6874                    TCGA-F1-6875 
"DEL PEAK 10(4P16.3) WILD-TYPE"   "DEL PEAK 10(4P16.3) MUTATED" 
                   TCGA-FP-7735                    TCGA-FP-7829 
"DEL PEAK 10(4P16.3) WILD-TYPE" "DEL PEAK 10(4P16.3) WILD-TYPE" 
                   TCGA-FP-7916                    TCGA-FP-7998 
  "DEL PEAK 10(4P16.3) MUTATED" "DEL PEAK 10(4P16.3) WILD-TYPE" 
                   TCGA-HJ-7597                    TCGA-IN-7806 
  "DEL PEAK 10(4P16.3) MUTATED"   "DEL PEAK 10(4P16.3) MUTATED" 
                   TCGA-IN-7808                    TCGA-IP-7968 
"DEL PEAK 10(4P16.3) WILD-TYPE"   "DEL PEAK 10(4P16.3) MUTATED" 
                   TCGA-B7-5816                    TCGA-B7-5818 
"DEL PEAK 10(4P16.3) WILD-TYPE" "DEL PEAK 10(4P16.3) WILD-TYPE" 
                   TCGA-BR-6452                    TCGA-BR-6455 
"DEL PEAK 10(4P16.3) WILD-TYPE" "DEL PEAK 10(4P16.3) WILD-TYPE" 
                   TCGA-BR-6457                    TCGA-BR-6458 
"DEL PEAK 10(4P16.3) WILD-TYPE" "DEL PEAK 10(4P16.3) WILD-TYPE" 
                   TCGA-BR-6563                    TCGA-BR-6564 
"DEL PEAK 10(4P16.3) WILD-TYPE" "DEL PEAK 10(4P16.3) WILD-TYPE" 
                   TCGA-BR-6565                    TCGA-BR-6566 
  "DEL PEAK 10(4P16.3) MUTATED" "DEL PEAK 10(4P16.3) WILD-TYPE" 
                   TCGA-BR-6705                    TCGA-BR-6706 
"DEL PEAK 10(4P16.3) WILD-TYPE" "DEL PEAK 10(4P16.3) WILD-TYPE" 
                   TCGA-BR-6707                    TCGA-BR-6709 
"DEL PEAK 10(4P16.3) WILD-TYPE" "DEL PEAK 10(4P16.3) WILD-TYPE" 
                   TCGA-BR-6710                    TCGA-BR-6801 
"DEL PEAK 10(4P16.3) WILD-TYPE" "DEL PEAK 10(4P16.3) WILD-TYPE" 
                   TCGA-BR-6802                    TCGA-BR-6803 
"DEL PEAK 10(4P16.3) WILD-TYPE"   "DEL PEAK 10(4P16.3) MUTATED" 
                   TCGA-BR-6852                    TCGA-BR-7196 
"DEL PEAK 10(4P16.3) WILD-TYPE" "DEL PEAK 10(4P16.3) WILD-TYPE" 
                   TCGA-BR-7197                    TCGA-BR-7703 
  "DEL PEAK 10(4P16.3) MUTATED"   "DEL PEAK 10(4P16.3) MUTATED" 
                   TCGA-BR-7704                    TCGA-BR-7707 
"DEL PEAK 10(4P16.3) WILD-TYPE" "DEL PEAK 10(4P16.3) WILD-TYPE" 
                   TCGA-BR-7715                    TCGA-BR-7716 
  "DEL PEAK 10(4P16.3) MUTATED"   "DEL PEAK 10(4P16.3) MUTATED" 
                   TCGA-BR-7717                    TCGA-BR-7722 
  "DEL PEAK 10(4P16.3) MUTATED" "DEL PEAK 10(4P16.3) WILD-TYPE" 
                   TCGA-BR-7723                    TCGA-BR-7851 
  "DEL PEAK 10(4P16.3) MUTATED" "DEL PEAK 10(4P16.3) WILD-TYPE" 
                   TCGA-BR-7901                    TCGA-BR-7957 
  "DEL PEAK 10(4P16.3) MUTATED"   "DEL PEAK 10(4P16.3) MUTATED" 
                   TCGA-BR-7958                    TCGA-BR-7959 
"DEL PEAK 10(4P16.3) WILD-TYPE" "DEL PEAK 10(4P16.3) WILD-TYPE" 
                   TCGA-BR-8059                    TCGA-BR-8060 
"DEL PEAK 10(4P16.3) WILD-TYPE" "DEL PEAK 10(4P16.3) WILD-TYPE" 
                   TCGA-BR-8077                    TCGA-BR-8078 
"DEL PEAK 10(4P16.3) WILD-TYPE" "DEL PEAK 10(4P16.3) WILD-TYPE" 
                   TCGA-BR-8080                    TCGA-BR-8081 
"DEL PEAK 10(4P16.3) WILD-TYPE" "DEL PEAK 10(4P16.3) WILD-TYPE" 
                   TCGA-BR-8284                    TCGA-BR-8285 
"DEL PEAK 10(4P16.3) WILD-TYPE" "DEL PEAK 10(4P16.3) WILD-TYPE" 
                   TCGA-BR-8286                    TCGA-BR-8289 
"DEL PEAK 10(4P16.3) WILD-TYPE" "DEL PEAK 10(4P16.3) WILD-TYPE" 
                   TCGA-BR-8291                    TCGA-BR-8295 
"DEL PEAK 10(4P16.3) WILD-TYPE" "DEL PEAK 10(4P16.3) WILD-TYPE" 
                   TCGA-BR-8296                    TCGA-BR-8297 
"DEL PEAK 10(4P16.3) WILD-TYPE" "DEL PEAK 10(4P16.3) WILD-TYPE" 
                   TCGA-CD-5798                    TCGA-CD-5799 
"DEL PEAK 10(4P16.3) WILD-TYPE" "DEL PEAK 10(4P16.3) WILD-TYPE" 
                   TCGA-CD-5800                    TCGA-CD-5801 
"DEL PEAK 10(4P16.3) WILD-TYPE" "DEL PEAK 10(4P16.3) WILD-TYPE" 
                   TCGA-CD-5802                    TCGA-CD-5803 
  "DEL PEAK 10(4P16.3) MUTATED"   "DEL PEAK 10(4P16.3) MUTATED" 
                   TCGA-CG-4300                    TCGA-CG-4301 
  "DEL PEAK 10(4P16.3) MUTATED" "DEL PEAK 10(4P16.3) WILD-TYPE" 
                   TCGA-CG-4304                    TCGA-CG-4305 
"DEL PEAK 10(4P16.3) WILD-TYPE" "DEL PEAK 10(4P16.3) WILD-TYPE" 
                   TCGA-CG-4306                    TCGA-CG-4436 
"DEL PEAK 10(4P16.3) WILD-TYPE"   "DEL PEAK 10(4P16.3) MUTATED" 
                   TCGA-CG-4437                    TCGA-CG-4438 
  "DEL PEAK 10(4P16.3) MUTATED"   "DEL PEAK 10(4P16.3) MUTATED" 
                   TCGA-CG-4440                    TCGA-CG-4441 
  "DEL PEAK 10(4P16.3) MUTATED" "DEL PEAK 10(4P16.3) WILD-TYPE" 
                   TCGA-CG-4443                    TCGA-CG-4444 
"DEL PEAK 10(4P16.3) WILD-TYPE"   "DEL PEAK 10(4P16.3) MUTATED" 
                   TCGA-CG-4449                    TCGA-CG-4455 
  "DEL PEAK 10(4P16.3) MUTATED"   "DEL PEAK 10(4P16.3) MUTATED" 
                   TCGA-CG-4460                    TCGA-CG-4462 
"DEL PEAK 10(4P16.3) WILD-TYPE" "DEL PEAK 10(4P16.3) WILD-TYPE" 
                   TCGA-CG-4465                    TCGA-CG-4466 
"DEL PEAK 10(4P16.3) WILD-TYPE"   "DEL PEAK 10(4P16.3) MUTATED" 
                   TCGA-CG-4469                    TCGA-CG-4472 
  "DEL PEAK 10(4P16.3) MUTATED" "DEL PEAK 10(4P16.3) WILD-TYPE" 
                   TCGA-CG-4474                    TCGA-CG-4477 
"DEL PEAK 10(4P16.3) WILD-TYPE" "DEL PEAK 10(4P16.3) WILD-TYPE" 
                   TCGA-CG-5716                    TCGA-CG-5717 
"DEL PEAK 10(4P16.3) WILD-TYPE" "DEL PEAK 10(4P16.3) WILD-TYPE" 
                   TCGA-CG-5718                    TCGA-CG-5719 
"DEL PEAK 10(4P16.3) WILD-TYPE" "DEL PEAK 10(4P16.3) WILD-TYPE" 
                   TCGA-CG-5720                    TCGA-CG-5721 
"DEL PEAK 10(4P16.3) WILD-TYPE" "DEL PEAK 10(4P16.3) WILD-TYPE" 
                   TCGA-CG-5722                    TCGA-CG-5723 
"DEL PEAK 10(4P16.3) WILD-TYPE" "DEL PEAK 10(4P16.3) WILD-TYPE" 
                   TCGA-CG-5724                    TCGA-CG-5725 
"DEL PEAK 10(4P16.3) WILD-TYPE"   "DEL PEAK 10(4P16.3) MUTATED" 
                   TCGA-CG-5726                    TCGA-CG-5727 
"DEL PEAK 10(4P16.3) WILD-TYPE" "DEL PEAK 10(4P16.3) WILD-TYPE" 
                   TCGA-CG-5728                    TCGA-CG-5730 
"DEL PEAK 10(4P16.3) WILD-TYPE" "DEL PEAK 10(4P16.3) WILD-TYPE" 
                   TCGA-CG-5732                    TCGA-CG-5733 
"DEL PEAK 10(4P16.3) WILD-TYPE" "DEL PEAK 10(4P16.3) WILD-TYPE" 
                   TCGA-CG-5734                    TCGA-D7-5577 
"DEL PEAK 10(4P16.3) WILD-TYPE" "DEL PEAK 10(4P16.3) WILD-TYPE" 
                   TCGA-D7-5578                    TCGA-D7-5579 
"DEL PEAK 10(4P16.3) WILD-TYPE" "DEL PEAK 10(4P16.3) WILD-TYPE" 
                   TCGA-D7-6518                    TCGA-D7-6519 
  "DEL PEAK 10(4P16.3) MUTATED"   "DEL PEAK 10(4P16.3) MUTATED" 
                   TCGA-D7-6520                    TCGA-D7-6521 
  "DEL PEAK 10(4P16.3) MUTATED" "DEL PEAK 10(4P16.3) WILD-TYPE" 
                   TCGA-D7-6522                    TCGA-D7-6524 
"DEL PEAK 10(4P16.3) WILD-TYPE" "DEL PEAK 10(4P16.3) WILD-TYPE" 
                   TCGA-D7-6525                    TCGA-D7-6526 
"DEL PEAK 10(4P16.3) WILD-TYPE"   "DEL PEAK 10(4P16.3) MUTATED" 
                   TCGA-D7-6527                    TCGA-D7-6528 
  "DEL PEAK 10(4P16.3) MUTATED"   "DEL PEAK 10(4P16.3) MUTATED" 
                   TCGA-D7-6815                    TCGA-D7-6817 
"DEL PEAK 10(4P16.3) WILD-TYPE" "DEL PEAK 10(4P16.3) WILD-TYPE" 
                   TCGA-D7-6818                    TCGA-D7-6820 
"DEL PEAK 10(4P16.3) WILD-TYPE"   "DEL PEAK 10(4P16.3) MUTATED" 
                   TCGA-D7-6822                    TCGA-EQ-5647 
"DEL PEAK 10(4P16.3) WILD-TYPE" "DEL PEAK 10(4P16.3) WILD-TYPE" 
                   TCGA-EQ-8122                    TCGA-F1-6177 
  "DEL PEAK 10(4P16.3) MUTATED" "DEL PEAK 10(4P16.3) WILD-TYPE" 
                   TCGA-F1-6874                    TCGA-F1-6875 
"DEL PEAK 10(4P16.3) WILD-TYPE"   "DEL PEAK 10(4P16.3) MUTATED" 
                   TCGA-FP-7735                    TCGA-FP-7829 
"DEL PEAK 10(4P16.3) WILD-TYPE" "DEL PEAK 10(4P16.3) WILD-TYPE" 
                   TCGA-FP-7916                    TCGA-FP-7998 
  "DEL PEAK 10(4P16.3) MUTATED" "DEL PEAK 10(4P16.3) WILD-TYPE" 
                   TCGA-HJ-7597                    TCGA-IN-7806 
  "DEL PEAK 10(4P16.3) MUTATED"   "DEL PEAK 10(4P16.3) MUTATED" 
                   TCGA-IN-7808                    TCGA-IP-7968 
"DEL PEAK 10(4P16.3) WILD-TYPE"   "DEL PEAK 10(4P16.3) MUTATED" 
                   TCGA-B7-5816                    TCGA-B7-5818 
"DEL PEAK 10(4P16.3) WILD-TYPE" "DEL PEAK 10(4P16.3) WILD-TYPE" 
                   TCGA-BR-6452                    TCGA-BR-6455 
"DEL PEAK 10(4P16.3) WILD-TYPE" "DEL PEAK 10(4P16.3) WILD-TYPE" 
                   TCGA-BR-6457                    TCGA-BR-6458 
"DEL PEAK 10(4P16.3) WILD-TYPE" "DEL PEAK 10(4P16.3) WILD-TYPE" 
                   TCGA-BR-6563                    TCGA-BR-6564 
"DEL PEAK 10(4P16.3) WILD-TYPE" "DEL PEAK 10(4P16.3) WILD-TYPE" 
                   TCGA-BR-6565                    TCGA-BR-6566 
  "DEL PEAK 10(4P16.3) MUTATED" "DEL PEAK 10(4P16.3) WILD-TYPE" 
                   TCGA-BR-6705                    TCGA-BR-6706 
"DEL PEAK 10(4P16.3) WILD-TYPE" "DEL PEAK 10(4P16.3) WILD-TYPE" 
                   TCGA-BR-6707                    TCGA-BR-6709 
"DEL PEAK 10(4P16.3) WILD-TYPE" "DEL PEAK 10(4P16.3) WILD-TYPE" 
                   TCGA-BR-6710                    TCGA-BR-6801 
"DEL PEAK 10(4P16.3) WILD-TYPE" "DEL PEAK 10(4P16.3) WILD-TYPE" 
                   TCGA-BR-6802                    TCGA-BR-6803 
"DEL PEAK 10(4P16.3) WILD-TYPE"   "DEL PEAK 10(4P16.3) MUTATED" 
                   TCGA-BR-6852                    TCGA-BR-7196 
"DEL PEAK 10(4P16.3) WILD-TYPE" "DEL PEAK 10(4P16.3) WILD-TYPE" 
                   TCGA-BR-7197                    TCGA-BR-7703 
  "DEL PEAK 10(4P16.3) MUTATED"   "DEL PEAK 10(4P16.3) MUTATED" 
                   TCGA-BR-7704                    TCGA-BR-7707 
"DEL PEAK 10(4P16.3) WILD-TYPE" "DEL PEAK 10(4P16.3) WILD-TYPE" 
                   TCGA-BR-7715                    TCGA-BR-7716 
  "DEL PEAK 10(4P16.3) MUTATED"   "DEL PEAK 10(4P16.3) MUTATED" 
                   TCGA-BR-7717                    TCGA-BR-7722 
  "DEL PEAK 10(4P16.3) MUTATED" "DEL PEAK 10(4P16.3) WILD-TYPE" 
                   TCGA-BR-7723                    TCGA-BR-7851 
  "DEL PEAK 10(4P16.3) MUTATED" "DEL PEAK 10(4P16.3) WILD-TYPE" 
                   TCGA-BR-7901                    TCGA-BR-7957 
  "DEL PEAK 10(4P16.3) MUTATED"   "DEL PEAK 10(4P16.3) MUTATED" 
                   TCGA-BR-7958                    TCGA-BR-7959 
"DEL PEAK 10(4P16.3) WILD-TYPE" "DEL PEAK 10(4P16.3) WILD-TYPE" 
                   TCGA-BR-8059                    TCGA-BR-8060 
"DEL PEAK 10(4P16.3) WILD-TYPE" "DEL PEAK 10(4P16.3) WILD-TYPE" 
                   TCGA-BR-8077                    TCGA-BR-8078 
"DEL PEAK 10(4P16.3) WILD-TYPE" "DEL PEAK 10(4P16.3) WILD-TYPE" 
                   TCGA-BR-8080                    TCGA-BR-8081 
"DEL PEAK 10(4P16.3) WILD-TYPE" "DEL PEAK 10(4P16.3) WILD-TYPE" 
                   TCGA-BR-8284                    TCGA-BR-8285 
"DEL PEAK 10(4P16.3) WILD-TYPE" "DEL PEAK 10(4P16.3) WILD-TYPE" 
                   TCGA-BR-8286                    TCGA-BR-8289 
"DEL PEAK 10(4P16.3) WILD-TYPE" "DEL PEAK 10(4P16.3) WILD-TYPE" 
                   TCGA-BR-8291                    TCGA-BR-8295 
"DEL PEAK 10(4P16.3) WILD-TYPE" "DEL PEAK 10(4P16.3) WILD-TYPE" 
                   TCGA-BR-8296                    TCGA-BR-8297 
"DEL PEAK 10(4P16.3) WILD-TYPE" "DEL PEAK 10(4P16.3) WILD-TYPE" 
                   TCGA-CD-5798                    TCGA-CD-5799 
"DEL PEAK 10(4P16.3) WILD-TYPE" "DEL PEAK 10(4P16.3) WILD-TYPE" 
                   TCGA-CD-5800                    TCGA-CD-5801 
"DEL PEAK 10(4P16.3) WILD-TYPE" "DEL PEAK 10(4P16.3) WILD-TYPE" 
                   TCGA-CD-5802                    TCGA-CD-5803 
  "DEL PEAK 10(4P16.3) MUTATED"   "DEL PEAK 10(4P16.3) MUTATED" 
                   TCGA-CG-4300                    TCGA-CG-4301 
  "DEL PEAK 10(4P16.3) MUTATED" "DEL PEAK 10(4P16.3) WILD-TYPE" 
                   TCGA-CG-4304                    TCGA-CG-4305 
"DEL PEAK 10(4P16.3) WILD-TYPE" "DEL PEAK 10(4P16.3) WILD-TYPE" 
                   TCGA-CG-4306                    TCGA-CG-4436 
"DEL PEAK 10(4P16.3) WILD-TYPE"   "DEL PEAK 10(4P16.3) MUTATED" 
                   TCGA-CG-4437                    TCGA-CG-4438 
  "DEL PEAK 10(4P16.3) MUTATED"   "DEL PEAK 10(4P16.3) MUTATED" 
                   TCGA-CG-4440                    TCGA-CG-4441 
  "DEL PEAK 10(4P16.3) MUTATED" "DEL PEAK 10(4P16.3) WILD-TYPE" 
                   TCGA-CG-4443                    TCGA-CG-4444 
"DEL PEAK 10(4P16.3) WILD-TYPE"   "DEL PEAK 10(4P16.3) MUTATED" 
                   TCGA-CG-4449                    TCGA-CG-4455 
  "DEL PEAK 10(4P16.3) MUTATED"   "DEL PEAK 10(4P16.3) MUTATED" 
                   TCGA-CG-4460                    TCGA-CG-4462 
"DEL PEAK 10(4P16.3) WILD-TYPE" "DEL PEAK 10(4P16.3) WILD-TYPE" 
                   TCGA-CG-4465                    TCGA-CG-4466 
"DEL PEAK 10(4P16.3) WILD-TYPE"   "DEL PEAK 10(4P16.3) MUTATED" 
                   TCGA-CG-4469                    TCGA-CG-4472 
  "DEL PEAK 10(4P16.3) MUTATED" "DEL PEAK 10(4P16.3) WILD-TYPE" 
                   TCGA-CG-4474                    TCGA-CG-4477 
"DEL PEAK 10(4P16.3) WILD-TYPE" "DEL PEAK 10(4P16.3) WILD-TYPE" 
                   TCGA-CG-5716                    TCGA-CG-5717 
"DEL PEAK 10(4P16.3) WILD-TYPE" "DEL PEAK 10(4P16.3) WILD-TYPE" 
                   TCGA-CG-5718                    TCGA-CG-5719 
"DEL PEAK 10(4P16.3) WILD-TYPE" "DEL PEAK 10(4P16.3) WILD-TYPE" 
                   TCGA-CG-5720                    TCGA-CG-5721 
"DEL PEAK 10(4P16.3) WILD-TYPE" "DEL PEAK 10(4P16.3) WILD-TYPE" 
                   TCGA-CG-5722                    TCGA-CG-5723 
"DEL PEAK 10(4P16.3) WILD-TYPE" "DEL PEAK 10(4P16.3) WILD-TYPE" 
                   TCGA-CG-5724                    TCGA-CG-5725 
"DEL PEAK 10(4P16.3) WILD-TYPE"   "DEL PEAK 10(4P16.3) MUTATED" 
                   TCGA-CG-5726                    TCGA-CG-5727 
"DEL PEAK 10(4P16.3) WILD-TYPE" "DEL PEAK 10(4P16.3) WILD-TYPE" 
                   TCGA-CG-5728                    TCGA-CG-5730 
"DEL PEAK 10(4P16.3) WILD-TYPE" "DEL PEAK 10(4P16.3) WILD-TYPE" 
                   TCGA-CG-5732                    TCGA-CG-5733 
"DEL PEAK 10(4P16.3) WILD-TYPE" "DEL PEAK 10(4P16.3) WILD-TYPE" 
                   TCGA-CG-5734                    TCGA-D7-5577 
"DEL PEAK 10(4P16.3) WILD-TYPE" "DEL PEAK 10(4P16.3) WILD-TYPE" 
                   TCGA-D7-5578                    TCGA-D7-5579 
"DEL PEAK 10(4P16.3) WILD-TYPE" "DEL PEAK 10(4P16.3) WILD-TYPE" 
                   TCGA-D7-6518                    TCGA-D7-6519 
  "DEL PEAK 10(4P16.3) MUTATED"   "DEL PEAK 10(4P16.3) MUTATED" 
                   TCGA-D7-6520                    TCGA-D7-6521 
  "DEL PEAK 10(4P16.3) MUTATED" "DEL PEAK 10(4P16.3) WILD-TYPE" 
                   TCGA-D7-6522                    TCGA-D7-6524 
"DEL PEAK 10(4P16.3) WILD-TYPE" "DEL PEAK 10(4P16.3) WILD-TYPE" 
                   TCGA-D7-6525                    TCGA-D7-6526 
"DEL PEAK 10(4P16.3) WILD-TYPE"   "DEL PEAK 10(4P16.3) MUTATED" 
                   TCGA-D7-6527                    TCGA-D7-6528 
  "DEL PEAK 10(4P16.3) MUTATED"   "DEL PEAK 10(4P16.3) MUTATED" 
                   TCGA-D7-6815                    TCGA-D7-6817 
"DEL PEAK 10(4P16.3) WILD-TYPE" "DEL PEAK 10(4P16.3) WILD-TYPE" 
                   TCGA-D7-6818                    TCGA-D7-6820 
"DEL PEAK 10(4P16.3) WILD-TYPE"   "DEL PEAK 10(4P16.3) MUTATED" 
                   TCGA-D7-6822                    TCGA-EQ-5647 
"DEL PEAK 10(4P16.3) WILD-TYPE" "DEL PEAK 10(4P16.3) WILD-TYPE" 
                   TCGA-EQ-8122                    TCGA-F1-6177 
  "DEL PEAK 10(4P16.3) MUTATED" "DEL PEAK 10(4P16.3) WILD-TYPE" 
                   TCGA-F1-6874                    TCGA-F1-6875 
"DEL PEAK 10(4P16.3) WILD-TYPE"   "DEL PEAK 10(4P16.3) MUTATED" 
                   TCGA-FP-7735                    TCGA-FP-7829 
"DEL PEAK 10(4P16.3) WILD-TYPE" "DEL PEAK 10(4P16.3) WILD-TYPE" 
                   TCGA-FP-7916                    TCGA-FP-7998 
  "DEL PEAK 10(4P16.3) MUTATED" "DEL PEAK 10(4P16.3) WILD-TYPE" 
                   TCGA-HJ-7597                    TCGA-IN-7806 
  "DEL PEAK 10(4P16.3) MUTATED"   "DEL PEAK 10(4P16.3) MUTATED" 
                   TCGA-IN-7808                    TCGA-IP-7968 
"DEL PEAK 10(4P16.3) WILD-TYPE"   "DEL PEAK 10(4P16.3) MUTATED" 
[1] "hr=" "2"  
D36V2, continuous
D36V3, binary
[1] "tbl2"
                               cls
clus                            [,1] [,2]
  DEL PEAK 10(4P16.3) MUTATED     17   32
  DEL PEAK 10(4P16.3) WILD-TYPE   48   64
        clus
vv       DEL PEAK 10(4P16.3) MUTATED DEL PEAK 10(4P16.3) WILD-TYPE
  FEMALE                          17                            48
  MALE                            32                            64
D36V4, multiclass
D36V5, multiclass
    clus
vv   DEL PEAK 10(4P16.3) MUTATED DEL PEAK 10(4P16.3) WILD-TYPE
  T1                           1                             5
  T2                          17                            36
  T3                          21                            38
  T4                           5                            28
D36V6, multiclass
    clus
vv   DEL PEAK 10(4P16.3) MUTATED DEL PEAK 10(4P16.3) WILD-TYPE
  N0                          13                            37
  N1                          18                            39
  N2                           8                            16
  N3                           6                            13
D36V7, multiclass
    clus
vv   DEL PEAK 10(4P16.3) MUTATED DEL PEAK 10(4P16.3) WILD-TYPE
  M0                          42                            90
  M1                           2                            16
  MX                           5                             6
D36V8, multiclass
     clus
vv    DEL PEAK 10(4P16.3) MUTATED DEL PEAK 10(4P16.3) WILD-TYPE
  I                             7                            18
  II                           14                            29
  III                          13                            35
  IV                            8                            21
D36V9, binary
[1] "tbl2"
                               cls
clus                            [,1] [,2]
  DEL PEAK 10(4P16.3) MUTATED     47    2
  DEL PEAK 10(4P16.3) WILD-TYPE  109    3
     clus
vv    DEL PEAK 10(4P16.3) MUTATED DEL PEAK 10(4P16.3) WILD-TYPE
  NO                            2                             3
  YES                          47                           109

Clustering(37) Variable = Del Peak 11(4q22.1) mutation analysis
D37V1, survival
                   TCGA-B7-5816                    TCGA-B7-5818 
"DEL PEAK 11(4Q22.1) WILD-TYPE" "DEL PEAK 11(4Q22.1) WILD-TYPE" 
                   TCGA-BR-6452                    TCGA-BR-6455 
"DEL PEAK 11(4Q22.1) WILD-TYPE" "DEL PEAK 11(4Q22.1) WILD-TYPE" 
                   TCGA-BR-6457                    TCGA-BR-6458 
"DEL PEAK 11(4Q22.1) WILD-TYPE"   "DEL PEAK 11(4Q22.1) MUTATED" 
                   TCGA-BR-6563                    TCGA-BR-6564 
"DEL PEAK 11(4Q22.1) WILD-TYPE" "DEL PEAK 11(4Q22.1) WILD-TYPE" 
                   TCGA-BR-6565                    TCGA-BR-6566 
  "DEL PEAK 11(4Q22.1) MUTATED" "DEL PEAK 11(4Q22.1) WILD-TYPE" 
                   TCGA-BR-6705                    TCGA-BR-6706 
"DEL PEAK 11(4Q22.1) WILD-TYPE" "DEL PEAK 11(4Q22.1) WILD-TYPE" 
                   TCGA-BR-6707                    TCGA-BR-6709 
"DEL PEAK 11(4Q22.1) WILD-TYPE" "DEL PEAK 11(4Q22.1) WILD-TYPE" 
                   TCGA-BR-6710                    TCGA-BR-6801 
"DEL PEAK 11(4Q22.1) WILD-TYPE"   "DEL PEAK 11(4Q22.1) MUTATED" 
                   TCGA-BR-6802                    TCGA-BR-6803 
"DEL PEAK 11(4Q22.1) WILD-TYPE"   "DEL PEAK 11(4Q22.1) MUTATED" 
                   TCGA-BR-6852                    TCGA-BR-7196 
"DEL PEAK 11(4Q22.1) WILD-TYPE" "DEL PEAK 11(4Q22.1) WILD-TYPE" 
                   TCGA-BR-7197                    TCGA-BR-7703 
"DEL PEAK 11(4Q22.1) WILD-TYPE" "DEL PEAK 11(4Q22.1) WILD-TYPE" 
                   TCGA-BR-7704                    TCGA-BR-7707 
"DEL PEAK 11(4Q22.1) WILD-TYPE" "DEL PEAK 11(4Q22.1) WILD-TYPE" 
                   TCGA-BR-7715                    TCGA-BR-7716 
"DEL PEAK 11(4Q22.1) WILD-TYPE"   "DEL PEAK 11(4Q22.1) MUTATED" 
                   TCGA-BR-7717                    TCGA-BR-7722 
  "DEL PEAK 11(4Q22.1) MUTATED" "DEL PEAK 11(4Q22.1) WILD-TYPE" 
                   TCGA-BR-7723                    TCGA-BR-7851 
"DEL PEAK 11(4Q22.1) WILD-TYPE" "DEL PEAK 11(4Q22.1) WILD-TYPE" 
                   TCGA-BR-7901                    TCGA-BR-7957 
"DEL PEAK 11(4Q22.1) WILD-TYPE"   "DEL PEAK 11(4Q22.1) MUTATED" 
                   TCGA-BR-7958                    TCGA-BR-7959 
"DEL PEAK 11(4Q22.1) WILD-TYPE" "DEL PEAK 11(4Q22.1) WILD-TYPE" 
                   TCGA-BR-8059                    TCGA-BR-8060 
"DEL PEAK 11(4Q22.1) WILD-TYPE" "DEL PEAK 11(4Q22.1) WILD-TYPE" 
                   TCGA-BR-8077                    TCGA-BR-8078 
"DEL PEAK 11(4Q22.1) WILD-TYPE" "DEL PEAK 11(4Q22.1) WILD-TYPE" 
                   TCGA-BR-8080                    TCGA-BR-8081 
"DEL PEAK 11(4Q22.1) WILD-TYPE" "DEL PEAK 11(4Q22.1) WILD-TYPE" 
                   TCGA-BR-8284                    TCGA-BR-8285 
"DEL PEAK 11(4Q22.1) WILD-TYPE" "DEL PEAK 11(4Q22.1) WILD-TYPE" 
                   TCGA-BR-8286                    TCGA-BR-8289 
"DEL PEAK 11(4Q22.1) WILD-TYPE" "DEL PEAK 11(4Q22.1) WILD-TYPE" 
                   TCGA-BR-8291                    TCGA-BR-8295 
"DEL PEAK 11(4Q22.1) WILD-TYPE" "DEL PEAK 11(4Q22.1) WILD-TYPE" 
                   TCGA-BR-8296                    TCGA-BR-8297 
"DEL PEAK 11(4Q22.1) WILD-TYPE" "DEL PEAK 11(4Q22.1) WILD-TYPE" 
                   TCGA-CD-5798                    TCGA-CD-5799 
"DEL PEAK 11(4Q22.1) WILD-TYPE"   "DEL PEAK 11(4Q22.1) MUTATED" 
                   TCGA-CD-5800                    TCGA-CD-5801 
  "DEL PEAK 11(4Q22.1) MUTATED" "DEL PEAK 11(4Q22.1) WILD-TYPE" 
                   TCGA-CD-5802                    TCGA-CD-5803 
  "DEL PEAK 11(4Q22.1) MUTATED"   "DEL PEAK 11(4Q22.1) MUTATED" 
                   TCGA-CG-4300                    TCGA-CG-4301 
  "DEL PEAK 11(4Q22.1) MUTATED"   "DEL PEAK 11(4Q22.1) MUTATED" 
                   TCGA-CG-4304                    TCGA-CG-4305 
"DEL PEAK 11(4Q22.1) WILD-TYPE" "DEL PEAK 11(4Q22.1) WILD-TYPE" 
                   TCGA-CG-4306                    TCGA-CG-4436 
"DEL PEAK 11(4Q22.1) WILD-TYPE"   "DEL PEAK 11(4Q22.1) MUTATED" 
                   TCGA-CG-4437                    TCGA-CG-4438 
  "DEL PEAK 11(4Q22.1) MUTATED"   "DEL PEAK 11(4Q22.1) MUTATED" 
                   TCGA-CG-4440                    TCGA-CG-4441 
  "DEL PEAK 11(4Q22.1) MUTATED" "DEL PEAK 11(4Q22.1) WILD-TYPE" 
                   TCGA-CG-4443                    TCGA-CG-4444 
"DEL PEAK 11(4Q22.1) WILD-TYPE"   "DEL PEAK 11(4Q22.1) MUTATED" 
                   TCGA-CG-4449                    TCGA-CG-4455 
  "DEL PEAK 11(4Q22.1) MUTATED"   "DEL PEAK 11(4Q22.1) MUTATED" 
                   TCGA-CG-4460                    TCGA-CG-4462 
"DEL PEAK 11(4Q22.1) WILD-TYPE" "DEL PEAK 11(4Q22.1) WILD-TYPE" 
                   TCGA-CG-4465                    TCGA-CG-4466 
"DEL PEAK 11(4Q22.1) WILD-TYPE"   "DEL PEAK 11(4Q22.1) MUTATED" 
                   TCGA-CG-4469                    TCGA-CG-4472 
  "DEL PEAK 11(4Q22.1) MUTATED" "DEL PEAK 11(4Q22.1) WILD-TYPE" 
                   TCGA-CG-4474                    TCGA-CG-4477 
"DEL PEAK 11(4Q22.1) WILD-TYPE"   "DEL PEAK 11(4Q22.1) MUTATED" 
                   TCGA-CG-5716                    TCGA-CG-5717 
"DEL PEAK 11(4Q22.1) WILD-TYPE" "DEL PEAK 11(4Q22.1) WILD-TYPE" 
                   TCGA-CG-5718                    TCGA-CG-5719 
"DEL PEAK 11(4Q22.1) WILD-TYPE" "DEL PEAK 11(4Q22.1) WILD-TYPE" 
                   TCGA-CG-5720                    TCGA-CG-5721 
  "DEL PEAK 11(4Q22.1) MUTATED" "DEL PEAK 11(4Q22.1) WILD-TYPE" 
                   TCGA-CG-5722                    TCGA-CG-5723 
"DEL PEAK 11(4Q22.1) WILD-TYPE" "DEL PEAK 11(4Q22.1) WILD-TYPE" 
                   TCGA-CG-5724                    TCGA-CG-5725 
  "DEL PEAK 11(4Q22.1) MUTATED" "DEL PEAK 11(4Q22.1) WILD-TYPE" 
                   TCGA-CG-5726                    TCGA-CG-5727 
"DEL PEAK 11(4Q22.1) WILD-TYPE"   "DEL PEAK 11(4Q22.1) MUTATED" 
                   TCGA-CG-5728                    TCGA-CG-5730 
"DEL PEAK 11(4Q22.1) WILD-TYPE"   "DEL PEAK 11(4Q22.1) MUTATED" 
                   TCGA-CG-5732                    TCGA-CG-5733 
  "DEL PEAK 11(4Q22.1) MUTATED" "DEL PEAK 11(4Q22.1) WILD-TYPE" 
                   TCGA-CG-5734                    TCGA-D7-5577 
"DEL PEAK 11(4Q22.1) WILD-TYPE"   "DEL PEAK 11(4Q22.1) MUTATED" 
                   TCGA-D7-5578                    TCGA-D7-5579 
  "DEL PEAK 11(4Q22.1) MUTATED"   "DEL PEAK 11(4Q22.1) MUTATED" 
                   TCGA-D7-6518                    TCGA-D7-6519 
  "DEL PEAK 11(4Q22.1) MUTATED"   "DEL PEAK 11(4Q22.1) MUTATED" 
                   TCGA-D7-6520                    TCGA-D7-6521 
"DEL PEAK 11(4Q22.1) WILD-TYPE" "DEL PEAK 11(4Q22.1) WILD-TYPE" 
                   TCGA-D7-6522                    TCGA-D7-6524 
"DEL PEAK 11(4Q22.1) WILD-TYPE" "DEL PEAK 11(4Q22.1) WILD-TYPE" 
                   TCGA-D7-6525                    TCGA-D7-6526 
"DEL PEAK 11(4Q22.1) WILD-TYPE"   "DEL PEAK 11(4Q22.1) MUTATED" 
                   TCGA-D7-6527                    TCGA-D7-6528 
  "DEL PEAK 11(4Q22.1) MUTATED"   "DEL PEAK 11(4Q22.1) MUTATED" 
                   TCGA-D7-6815                    TCGA-D7-6817 
  "DEL PEAK 11(4Q22.1) MUTATED" "DEL PEAK 11(4Q22.1) WILD-TYPE" 
                   TCGA-D7-6818                    TCGA-D7-6820 
  "DEL PEAK 11(4Q22.1) MUTATED"   "DEL PEAK 11(4Q22.1) MUTATED" 
                   TCGA-D7-6822                    TCGA-EQ-5647 
"DEL PEAK 11(4Q22.1) WILD-TYPE"   "DEL PEAK 11(4Q22.1) MUTATED" 
                   TCGA-EQ-8122                    TCGA-F1-6177 
  "DEL PEAK 11(4Q22.1) MUTATED" "DEL PEAK 11(4Q22.1) WILD-TYPE" 
                   TCGA-F1-6874                    TCGA-F1-6875 
"DEL PEAK 11(4Q22.1) WILD-TYPE"   "DEL PEAK 11(4Q22.1) MUTATED" 
                   TCGA-FP-7735                    TCGA-FP-7829 
  "DEL PEAK 11(4Q22.1) MUTATED"   "DEL PEAK 11(4Q22.1) MUTATED" 
                   TCGA-FP-7916                    TCGA-FP-7998 
  "DEL PEAK 11(4Q22.1) MUTATED" "DEL PEAK 11(4Q22.1) WILD-TYPE" 
                   TCGA-HJ-7597                    TCGA-IN-7806 
"DEL PEAK 11(4Q22.1) WILD-TYPE"   "DEL PEAK 11(4Q22.1) MUTATED" 
                   TCGA-IN-7808                    TCGA-IP-7968 
"DEL PEAK 11(4Q22.1) WILD-TYPE"   "DEL PEAK 11(4Q22.1) MUTATED" 
                   TCGA-B7-5816                    TCGA-B7-5818 
"DEL PEAK 11(4Q22.1) WILD-TYPE" "DEL PEAK 11(4Q22.1) WILD-TYPE" 
                   TCGA-BR-6452                    TCGA-BR-6455 
"DEL PEAK 11(4Q22.1) WILD-TYPE" "DEL PEAK 11(4Q22.1) WILD-TYPE" 
                   TCGA-BR-6457                    TCGA-BR-6458 
"DEL PEAK 11(4Q22.1) WILD-TYPE"   "DEL PEAK 11(4Q22.1) MUTATED" 
                   TCGA-BR-6563                    TCGA-BR-6564 
"DEL PEAK 11(4Q22.1) WILD-TYPE" "DEL PEAK 11(4Q22.1) WILD-TYPE" 
                   TCGA-BR-6565                    TCGA-BR-6566 
  "DEL PEAK 11(4Q22.1) MUTATED" "DEL PEAK 11(4Q22.1) WILD-TYPE" 
                   TCGA-BR-6705                    TCGA-BR-6706 
"DEL PEAK 11(4Q22.1) WILD-TYPE" "DEL PEAK 11(4Q22.1) WILD-TYPE" 
                   TCGA-BR-6707                    TCGA-BR-6709 
"DEL PEAK 11(4Q22.1) WILD-TYPE" "DEL PEAK 11(4Q22.1) WILD-TYPE" 
                   TCGA-BR-6710                    TCGA-BR-6801 
"DEL PEAK 11(4Q22.1) WILD-TYPE"   "DEL PEAK 11(4Q22.1) MUTATED" 
                   TCGA-BR-6802                    TCGA-BR-6803 
"DEL PEAK 11(4Q22.1) WILD-TYPE"   "DEL PEAK 11(4Q22.1) MUTATED" 
                   TCGA-BR-6852                    TCGA-BR-7196 
"DEL PEAK 11(4Q22.1) WILD-TYPE" "DEL PEAK 11(4Q22.1) WILD-TYPE" 
                   TCGA-BR-7197                    TCGA-BR-7703 
"DEL PEAK 11(4Q22.1) WILD-TYPE" "DEL PEAK 11(4Q22.1) WILD-TYPE" 
                   TCGA-BR-7704                    TCGA-BR-7707 
"DEL PEAK 11(4Q22.1) WILD-TYPE" "DEL PEAK 11(4Q22.1) WILD-TYPE" 
                   TCGA-BR-7715                    TCGA-BR-7716 
"DEL PEAK 11(4Q22.1) WILD-TYPE"   "DEL PEAK 11(4Q22.1) MUTATED" 
                   TCGA-BR-7717                    TCGA-BR-7722 
  "DEL PEAK 11(4Q22.1) MUTATED" "DEL PEAK 11(4Q22.1) WILD-TYPE" 
                   TCGA-BR-7723                    TCGA-BR-7851 
"DEL PEAK 11(4Q22.1) WILD-TYPE" "DEL PEAK 11(4Q22.1) WILD-TYPE" 
                   TCGA-BR-7901                    TCGA-BR-7957 
"DEL PEAK 11(4Q22.1) WILD-TYPE"   "DEL PEAK 11(4Q22.1) MUTATED" 
                   TCGA-BR-7958                    TCGA-BR-7959 
"DEL PEAK 11(4Q22.1) WILD-TYPE" "DEL PEAK 11(4Q22.1) WILD-TYPE" 
                   TCGA-BR-8059                    TCGA-BR-8060 
"DEL PEAK 11(4Q22.1) WILD-TYPE" "DEL PEAK 11(4Q22.1) WILD-TYPE" 
                   TCGA-BR-8077                    TCGA-BR-8078 
"DEL PEAK 11(4Q22.1) WILD-TYPE" "DEL PEAK 11(4Q22.1) WILD-TYPE" 
                   TCGA-BR-8080                    TCGA-BR-8081 
"DEL PEAK 11(4Q22.1) WILD-TYPE" "DEL PEAK 11(4Q22.1) WILD-TYPE" 
                   TCGA-BR-8284                    TCGA-BR-8285 
"DEL PEAK 11(4Q22.1) WILD-TYPE" "DEL PEAK 11(4Q22.1) WILD-TYPE" 
                   TCGA-BR-8286                    TCGA-BR-8289 
"DEL PEAK 11(4Q22.1) WILD-TYPE" "DEL PEAK 11(4Q22.1) WILD-TYPE" 
                   TCGA-BR-8291                    TCGA-BR-8295 
"DEL PEAK 11(4Q22.1) WILD-TYPE" "DEL PEAK 11(4Q22.1) WILD-TYPE" 
                   TCGA-BR-8296                    TCGA-BR-8297 
"DEL PEAK 11(4Q22.1) WILD-TYPE" "DEL PEAK 11(4Q22.1) WILD-TYPE" 
                   TCGA-CD-5798                    TCGA-CD-5799 
"DEL PEAK 11(4Q22.1) WILD-TYPE"   "DEL PEAK 11(4Q22.1) MUTATED" 
                   TCGA-CD-5800                    TCGA-CD-5801 
  "DEL PEAK 11(4Q22.1) MUTATED" "DEL PEAK 11(4Q22.1) WILD-TYPE" 
                   TCGA-CD-5802                    TCGA-CD-5803 
  "DEL PEAK 11(4Q22.1) MUTATED"   "DEL PEAK 11(4Q22.1) MUTATED" 
                   TCGA-CG-4300                    TCGA-CG-4301 
  "DEL PEAK 11(4Q22.1) MUTATED"   "DEL PEAK 11(4Q22.1) MUTATED" 
                   TCGA-CG-4304                    TCGA-CG-4305 
"DEL PEAK 11(4Q22.1) WILD-TYPE" "DEL PEAK 11(4Q22.1) WILD-TYPE" 
                   TCGA-CG-4306                    TCGA-CG-4436 
"DEL PEAK 11(4Q22.1) WILD-TYPE"   "DEL PEAK 11(4Q22.1) MUTATED" 
                   TCGA-CG-4437                    TCGA-CG-4438 
  "DEL PEAK 11(4Q22.1) MUTATED"   "DEL PEAK 11(4Q22.1) MUTATED" 
                   TCGA-CG-4440                    TCGA-CG-4441 
  "DEL PEAK 11(4Q22.1) MUTATED" "DEL PEAK 11(4Q22.1) WILD-TYPE" 
                   TCGA-CG-4443                    TCGA-CG-4444 
"DEL PEAK 11(4Q22.1) WILD-TYPE"   "DEL PEAK 11(4Q22.1) MUTATED" 
                   TCGA-CG-4449                    TCGA-CG-4455 
  "DEL PEAK 11(4Q22.1) MUTATED"   "DEL PEAK 11(4Q22.1) MUTATED" 
                   TCGA-CG-4460                    TCGA-CG-4462 
"DEL PEAK 11(4Q22.1) WILD-TYPE" "DEL PEAK 11(4Q22.1) WILD-TYPE" 
                   TCGA-CG-4465                    TCGA-CG-4466 
"DEL PEAK 11(4Q22.1) WILD-TYPE"   "DEL PEAK 11(4Q22.1) MUTATED" 
                   TCGA-CG-4469                    TCGA-CG-4472 
  "DEL PEAK 11(4Q22.1) MUTATED" "DEL PEAK 11(4Q22.1) WILD-TYPE" 
                   TCGA-CG-4474                    TCGA-CG-4477 
"DEL PEAK 11(4Q22.1) WILD-TYPE"   "DEL PEAK 11(4Q22.1) MUTATED" 
                   TCGA-CG-5716                    TCGA-CG-5717 
"DEL PEAK 11(4Q22.1) WILD-TYPE" "DEL PEAK 11(4Q22.1) WILD-TYPE" 
                   TCGA-CG-5718                    TCGA-CG-5719 
"DEL PEAK 11(4Q22.1) WILD-TYPE" "DEL PEAK 11(4Q22.1) WILD-TYPE" 
                   TCGA-CG-5720                    TCGA-CG-5721 
  "DEL PEAK 11(4Q22.1) MUTATED" "DEL PEAK 11(4Q22.1) WILD-TYPE" 
                   TCGA-CG-5722                    TCGA-CG-5723 
"DEL PEAK 11(4Q22.1) WILD-TYPE" "DEL PEAK 11(4Q22.1) WILD-TYPE" 
                   TCGA-CG-5724                    TCGA-CG-5725 
  "DEL PEAK 11(4Q22.1) MUTATED" "DEL PEAK 11(4Q22.1) WILD-TYPE" 
                   TCGA-CG-5726                    TCGA-CG-5727 
"DEL PEAK 11(4Q22.1) WILD-TYPE"   "DEL PEAK 11(4Q22.1) MUTATED" 
                   TCGA-CG-5728                    TCGA-CG-5730 
"DEL PEAK 11(4Q22.1) WILD-TYPE"   "DEL PEAK 11(4Q22.1) MUTATED" 
                   TCGA-CG-5732                    TCGA-CG-5733 
  "DEL PEAK 11(4Q22.1) MUTATED" "DEL PEAK 11(4Q22.1) WILD-TYPE" 
                   TCGA-CG-5734                    TCGA-D7-5577 
"DEL PEAK 11(4Q22.1) WILD-TYPE"   "DEL PEAK 11(4Q22.1) MUTATED" 
                   TCGA-D7-5578                    TCGA-D7-5579 
  "DEL PEAK 11(4Q22.1) MUTATED"   "DEL PEAK 11(4Q22.1) MUTATED" 
                   TCGA-D7-6518                    TCGA-D7-6519 
  "DEL PEAK 11(4Q22.1) MUTATED"   "DEL PEAK 11(4Q22.1) MUTATED" 
                   TCGA-D7-6520                    TCGA-D7-6521 
"DEL PEAK 11(4Q22.1) WILD-TYPE" "DEL PEAK 11(4Q22.1) WILD-TYPE" 
                   TCGA-D7-6522                    TCGA-D7-6524 
"DEL PEAK 11(4Q22.1) WILD-TYPE" "DEL PEAK 11(4Q22.1) WILD-TYPE" 
                   TCGA-D7-6525                    TCGA-D7-6526 
"DEL PEAK 11(4Q22.1) WILD-TYPE"   "DEL PEAK 11(4Q22.1) MUTATED" 
                   TCGA-D7-6527                    TCGA-D7-6528 
  "DEL PEAK 11(4Q22.1) MUTATED"   "DEL PEAK 11(4Q22.1) MUTATED" 
                   TCGA-D7-6815                    TCGA-D7-6817 
  "DEL PEAK 11(4Q22.1) MUTATED" "DEL PEAK 11(4Q22.1) WILD-TYPE" 
                   TCGA-D7-6818                    TCGA-D7-6820 
  "DEL PEAK 11(4Q22.1) MUTATED"   "DEL PEAK 11(4Q22.1) MUTATED" 
                   TCGA-D7-6822                    TCGA-EQ-5647 
"DEL PEAK 11(4Q22.1) WILD-TYPE"   "DEL PEAK 11(4Q22.1) MUTATED" 
                   TCGA-EQ-8122                    TCGA-F1-6177 
  "DEL PEAK 11(4Q22.1) MUTATED" "DEL PEAK 11(4Q22.1) WILD-TYPE" 
                   TCGA-F1-6874                    TCGA-F1-6875 
"DEL PEAK 11(4Q22.1) WILD-TYPE"   "DEL PEAK 11(4Q22.1) MUTATED" 
                   TCGA-FP-7735                    TCGA-FP-7829 
  "DEL PEAK 11(4Q22.1) MUTATED"   "DEL PEAK 11(4Q22.1) MUTATED" 
                   TCGA-FP-7916                    TCGA-FP-7998 
  "DEL PEAK 11(4Q22.1) MUTATED" "DEL PEAK 11(4Q22.1) WILD-TYPE" 
                   TCGA-HJ-7597                    TCGA-IN-7806 
"DEL PEAK 11(4Q22.1) WILD-TYPE"   "DEL PEAK 11(4Q22.1) MUTATED" 
                   TCGA-IN-7808                    TCGA-IP-7968 
"DEL PEAK 11(4Q22.1) WILD-TYPE"   "DEL PEAK 11(4Q22.1) MUTATED" 
                   TCGA-B7-5816                    TCGA-B7-5818 
"DEL PEAK 11(4Q22.1) WILD-TYPE" "DEL PEAK 11(4Q22.1) WILD-TYPE" 
                   TCGA-BR-6452                    TCGA-BR-6455 
"DEL PEAK 11(4Q22.1) WILD-TYPE" "DEL PEAK 11(4Q22.1) WILD-TYPE" 
                   TCGA-BR-6457                    TCGA-BR-6458 
"DEL PEAK 11(4Q22.1) WILD-TYPE"   "DEL PEAK 11(4Q22.1) MUTATED" 
                   TCGA-BR-6563                    TCGA-BR-6564 
"DEL PEAK 11(4Q22.1) WILD-TYPE" "DEL PEAK 11(4Q22.1) WILD-TYPE" 
                   TCGA-BR-6565                    TCGA-BR-6566 
  "DEL PEAK 11(4Q22.1) MUTATED" "DEL PEAK 11(4Q22.1) WILD-TYPE" 
                   TCGA-BR-6705                    TCGA-BR-6706 
"DEL PEAK 11(4Q22.1) WILD-TYPE" "DEL PEAK 11(4Q22.1) WILD-TYPE" 
                   TCGA-BR-6707                    TCGA-BR-6709 
"DEL PEAK 11(4Q22.1) WILD-TYPE" "DEL PEAK 11(4Q22.1) WILD-TYPE" 
                   TCGA-BR-6710                    TCGA-BR-6801 
"DEL PEAK 11(4Q22.1) WILD-TYPE"   "DEL PEAK 11(4Q22.1) MUTATED" 
                   TCGA-BR-6802                    TCGA-BR-6803 
"DEL PEAK 11(4Q22.1) WILD-TYPE"   "DEL PEAK 11(4Q22.1) MUTATED" 
                   TCGA-BR-6852                    TCGA-BR-7196 
"DEL PEAK 11(4Q22.1) WILD-TYPE" "DEL PEAK 11(4Q22.1) WILD-TYPE" 
                   TCGA-BR-7197                    TCGA-BR-7703 
"DEL PEAK 11(4Q22.1) WILD-TYPE" "DEL PEAK 11(4Q22.1) WILD-TYPE" 
                   TCGA-BR-7704                    TCGA-BR-7707 
"DEL PEAK 11(4Q22.1) WILD-TYPE" "DEL PEAK 11(4Q22.1) WILD-TYPE" 
                   TCGA-BR-7715                    TCGA-BR-7716 
"DEL PEAK 11(4Q22.1) WILD-TYPE"   "DEL PEAK 11(4Q22.1) MUTATED" 
                   TCGA-BR-7717                    TCGA-BR-7722 
  "DEL PEAK 11(4Q22.1) MUTATED" "DEL PEAK 11(4Q22.1) WILD-TYPE" 
                   TCGA-BR-7723                    TCGA-BR-7851 
"DEL PEAK 11(4Q22.1) WILD-TYPE" "DEL PEAK 11(4Q22.1) WILD-TYPE" 
                   TCGA-BR-7901                    TCGA-BR-7957 
"DEL PEAK 11(4Q22.1) WILD-TYPE"   "DEL PEAK 11(4Q22.1) MUTATED" 
                   TCGA-BR-7958                    TCGA-BR-7959 
"DEL PEAK 11(4Q22.1) WILD-TYPE" "DEL PEAK 11(4Q22.1) WILD-TYPE" 
                   TCGA-BR-8059                    TCGA-BR-8060 
"DEL PEAK 11(4Q22.1) WILD-TYPE" "DEL PEAK 11(4Q22.1) WILD-TYPE" 
                   TCGA-BR-8077                    TCGA-BR-8078 
"DEL PEAK 11(4Q22.1) WILD-TYPE" "DEL PEAK 11(4Q22.1) WILD-TYPE" 
                   TCGA-BR-8080                    TCGA-BR-8081 
"DEL PEAK 11(4Q22.1) WILD-TYPE" "DEL PEAK 11(4Q22.1) WILD-TYPE" 
                   TCGA-BR-8284                    TCGA-BR-8285 
"DEL PEAK 11(4Q22.1) WILD-TYPE" "DEL PEAK 11(4Q22.1) WILD-TYPE" 
                   TCGA-BR-8286                    TCGA-BR-8289 
"DEL PEAK 11(4Q22.1) WILD-TYPE" "DEL PEAK 11(4Q22.1) WILD-TYPE" 
                   TCGA-BR-8291                    TCGA-BR-8295 
"DEL PEAK 11(4Q22.1) WILD-TYPE" "DEL PEAK 11(4Q22.1) WILD-TYPE" 
                   TCGA-BR-8296                    TCGA-BR-8297 
"DEL PEAK 11(4Q22.1) WILD-TYPE" "DEL PEAK 11(4Q22.1) WILD-TYPE" 
                   TCGA-CD-5798                    TCGA-CD-5799 
"DEL PEAK 11(4Q22.1) WILD-TYPE"   "DEL PEAK 11(4Q22.1) MUTATED" 
                   TCGA-CD-5800                    TCGA-CD-5801 
  "DEL PEAK 11(4Q22.1) MUTATED" "DEL PEAK 11(4Q22.1) WILD-TYPE" 
                   TCGA-CD-5802                    TCGA-CD-5803 
  "DEL PEAK 11(4Q22.1) MUTATED"   "DEL PEAK 11(4Q22.1) MUTATED" 
                   TCGA-CG-4300                    TCGA-CG-4301 
  "DEL PEAK 11(4Q22.1) MUTATED"   "DEL PEAK 11(4Q22.1) MUTATED" 
                   TCGA-CG-4304                    TCGA-CG-4305 
"DEL PEAK 11(4Q22.1) WILD-TYPE" "DEL PEAK 11(4Q22.1) WILD-TYPE" 
                   TCGA-CG-4306                    TCGA-CG-4436 
"DEL PEAK 11(4Q22.1) WILD-TYPE"   "DEL PEAK 11(4Q22.1) MUTATED" 
                   TCGA-CG-4437                    TCGA-CG-4438 
  "DEL PEAK 11(4Q22.1) MUTATED"   "DEL PEAK 11(4Q22.1) MUTATED" 
                   TCGA-CG-4440                    TCGA-CG-4441 
  "DEL PEAK 11(4Q22.1) MUTATED" "DEL PEAK 11(4Q22.1) WILD-TYPE" 
                   TCGA-CG-4443                    TCGA-CG-4444 
"DEL PEAK 11(4Q22.1) WILD-TYPE"   "DEL PEAK 11(4Q22.1) MUTATED" 
                   TCGA-CG-4449                    TCGA-CG-4455 
  "DEL PEAK 11(4Q22.1) MUTATED"   "DEL PEAK 11(4Q22.1) MUTATED" 
                   TCGA-CG-4460                    TCGA-CG-4462 
"DEL PEAK 11(4Q22.1) WILD-TYPE" "DEL PEAK 11(4Q22.1) WILD-TYPE" 
                   TCGA-CG-4465                    TCGA-CG-4466 
"DEL PEAK 11(4Q22.1) WILD-TYPE"   "DEL PEAK 11(4Q22.1) MUTATED" 
                   TCGA-CG-4469                    TCGA-CG-4472 
  "DEL PEAK 11(4Q22.1) MUTATED" "DEL PEAK 11(4Q22.1) WILD-TYPE" 
                   TCGA-CG-4474                    TCGA-CG-4477 
"DEL PEAK 11(4Q22.1) WILD-TYPE"   "DEL PEAK 11(4Q22.1) MUTATED" 
                   TCGA-CG-5716                    TCGA-CG-5717 
"DEL PEAK 11(4Q22.1) WILD-TYPE" "DEL PEAK 11(4Q22.1) WILD-TYPE" 
                   TCGA-CG-5718                    TCGA-CG-5719 
"DEL PEAK 11(4Q22.1) WILD-TYPE" "DEL PEAK 11(4Q22.1) WILD-TYPE" 
                   TCGA-CG-5720                    TCGA-CG-5721 
  "DEL PEAK 11(4Q22.1) MUTATED" "DEL PEAK 11(4Q22.1) WILD-TYPE" 
                   TCGA-CG-5722                    TCGA-CG-5723 
"DEL PEAK 11(4Q22.1) WILD-TYPE" "DEL PEAK 11(4Q22.1) WILD-TYPE" 
                   TCGA-CG-5724                    TCGA-CG-5725 
  "DEL PEAK 11(4Q22.1) MUTATED" "DEL PEAK 11(4Q22.1) WILD-TYPE" 
                   TCGA-CG-5726                    TCGA-CG-5727 
"DEL PEAK 11(4Q22.1) WILD-TYPE"   "DEL PEAK 11(4Q22.1) MUTATED" 
                   TCGA-CG-5728                    TCGA-CG-5730 
"DEL PEAK 11(4Q22.1) WILD-TYPE"   "DEL PEAK 11(4Q22.1) MUTATED" 
                   TCGA-CG-5732                    TCGA-CG-5733 
  "DEL PEAK 11(4Q22.1) MUTATED" "DEL PEAK 11(4Q22.1) WILD-TYPE" 
                   TCGA-CG-5734                    TCGA-D7-5577 
"DEL PEAK 11(4Q22.1) WILD-TYPE"   "DEL PEAK 11(4Q22.1) MUTATED" 
                   TCGA-D7-5578                    TCGA-D7-5579 
  "DEL PEAK 11(4Q22.1) MUTATED"   "DEL PEAK 11(4Q22.1) MUTATED" 
                   TCGA-D7-6518                    TCGA-D7-6519 
  "DEL PEAK 11(4Q22.1) MUTATED"   "DEL PEAK 11(4Q22.1) MUTATED" 
                   TCGA-D7-6520                    TCGA-D7-6521 
"DEL PEAK 11(4Q22.1) WILD-TYPE" "DEL PEAK 11(4Q22.1) WILD-TYPE" 
                   TCGA-D7-6522                    TCGA-D7-6524 
"DEL PEAK 11(4Q22.1) WILD-TYPE" "DEL PEAK 11(4Q22.1) WILD-TYPE" 
                   TCGA-D7-6525                    TCGA-D7-6526 
"DEL PEAK 11(4Q22.1) WILD-TYPE"   "DEL PEAK 11(4Q22.1) MUTATED" 
                   TCGA-D7-6527                    TCGA-D7-6528 
  "DEL PEAK 11(4Q22.1) MUTATED"   "DEL PEAK 11(4Q22.1) MUTATED" 
                   TCGA-D7-6815                    TCGA-D7-6817 
  "DEL PEAK 11(4Q22.1) MUTATED" "DEL PEAK 11(4Q22.1) WILD-TYPE" 
                   TCGA-D7-6818                    TCGA-D7-6820 
  "DEL PEAK 11(4Q22.1) MUTATED"   "DEL PEAK 11(4Q22.1) MUTATED" 
                   TCGA-D7-6822                    TCGA-EQ-5647 
"DEL PEAK 11(4Q22.1) WILD-TYPE"   "DEL PEAK 11(4Q22.1) MUTATED" 
                   TCGA-EQ-8122                    TCGA-F1-6177 
  "DEL PEAK 11(4Q22.1) MUTATED" "DEL PEAK 11(4Q22.1) WILD-TYPE" 
                   TCGA-F1-6874                    TCGA-F1-6875 
"DEL PEAK 11(4Q22.1) WILD-TYPE"   "DEL PEAK 11(4Q22.1) MUTATED" 
                   TCGA-FP-7735                    TCGA-FP-7829 
  "DEL PEAK 11(4Q22.1) MUTATED"   "DEL PEAK 11(4Q22.1) MUTATED" 
                   TCGA-FP-7916                    TCGA-FP-7998 
  "DEL PEAK 11(4Q22.1) MUTATED" "DEL PEAK 11(4Q22.1) WILD-TYPE" 
                   TCGA-HJ-7597                    TCGA-IN-7806 
"DEL PEAK 11(4Q22.1) WILD-TYPE"   "DEL PEAK 11(4Q22.1) MUTATED" 
                   TCGA-IN-7808                    TCGA-IP-7968 
"DEL PEAK 11(4Q22.1) WILD-TYPE"   "DEL PEAK 11(4Q22.1) MUTATED" 
[1] "hr=" "1.8"
D37V2, continuous
D37V3, binary
[1] "tbl2"
                               cls
clus                            [,1] [,2]
  DEL PEAK 11(4Q22.1) MUTATED     23   37
  DEL PEAK 11(4Q22.1) WILD-TYPE   42   59
        clus
vv       DEL PEAK 11(4Q22.1) MUTATED DEL PEAK 11(4Q22.1) WILD-TYPE
  FEMALE                          23                            42
  MALE                            37                            59
D37V4, multiclass
D37V5, multiclass
    clus
vv   DEL PEAK 11(4Q22.1) MUTATED DEL PEAK 11(4Q22.1) WILD-TYPE
  T1                           0                             6
  T2                          24                            29
  T3                          23                            36
  T4                           8                            25
D37V6, multiclass
    clus
vv   DEL PEAK 11(4Q22.1) MUTATED DEL PEAK 11(4Q22.1) WILD-TYPE
  N0                          15                            35
  N1                          21                            36
  N2                           9                            15
  N3                          11                             8
D37V7, multiclass
    clus
vv   DEL PEAK 11(4Q22.1) MUTATED DEL PEAK 11(4Q22.1) WILD-TYPE
  M0                          49                            83
  M1                           6                            12
  MX                           5                             6
D37V8, multiclass
     clus
vv    DEL PEAK 11(4Q22.1) MUTATED DEL PEAK 11(4Q22.1) WILD-TYPE
  I                             8                            17
  II                           17                            26
  III                          15                            33
  IV                           14                            15
D37V9, binary
[1] "tbl2"
                               cls
clus                            [,1] [,2]
  DEL PEAK 11(4Q22.1) MUTATED     56    4
  DEL PEAK 11(4Q22.1) WILD-TYPE  100    1
     clus
vv    DEL PEAK 11(4Q22.1) MUTATED DEL PEAK 11(4Q22.1) WILD-TYPE
  NO                            4                             1
  YES                          56                           100

Clustering(38) Variable = Del Peak 12(4q35.1) mutation analysis
D38V1, survival
                   TCGA-B7-5816                    TCGA-B7-5818 
"DEL PEAK 12(4Q35.1) WILD-TYPE" "DEL PEAK 12(4Q35.1) WILD-TYPE" 
                   TCGA-BR-6452                    TCGA-BR-6455 
"DEL PEAK 12(4Q35.1) WILD-TYPE" "DEL PEAK 12(4Q35.1) WILD-TYPE" 
                   TCGA-BR-6457                    TCGA-BR-6458 
"DEL PEAK 12(4Q35.1) WILD-TYPE"   "DEL PEAK 12(4Q35.1) MUTATED" 
                   TCGA-BR-6563                    TCGA-BR-6564 
"DEL PEAK 12(4Q35.1) WILD-TYPE" "DEL PEAK 12(4Q35.1) WILD-TYPE" 
                   TCGA-BR-6565                    TCGA-BR-6566 
  "DEL PEAK 12(4Q35.1) MUTATED" "DEL PEAK 12(4Q35.1) WILD-TYPE" 
                   TCGA-BR-6705                    TCGA-BR-6706 
  "DEL PEAK 12(4Q35.1) MUTATED" "DEL PEAK 12(4Q35.1) WILD-TYPE" 
                   TCGA-BR-6707                    TCGA-BR-6709 
"DEL PEAK 12(4Q35.1) WILD-TYPE"   "DEL PEAK 12(4Q35.1) MUTATED" 
                   TCGA-BR-6710                    TCGA-BR-6801 
"DEL PEAK 12(4Q35.1) WILD-TYPE" "DEL PEAK 12(4Q35.1) WILD-TYPE" 
                   TCGA-BR-6802                    TCGA-BR-6803 
"DEL PEAK 12(4Q35.1) WILD-TYPE"   "DEL PEAK 12(4Q35.1) MUTATED" 
                   TCGA-BR-6852                    TCGA-BR-7196 
"DEL PEAK 12(4Q35.1) WILD-TYPE" "DEL PEAK 12(4Q35.1) WILD-TYPE" 
                   TCGA-BR-7197                    TCGA-BR-7703 
  "DEL PEAK 12(4Q35.1) MUTATED" "DEL PEAK 12(4Q35.1) WILD-TYPE" 
                   TCGA-BR-7704                    TCGA-BR-7707 
"DEL PEAK 12(4Q35.1) WILD-TYPE" "DEL PEAK 12(4Q35.1) WILD-TYPE" 
                   TCGA-BR-7715                    TCGA-BR-7716 
  "DEL PEAK 12(4Q35.1) MUTATED" "DEL PEAK 12(4Q35.1) WILD-TYPE" 
                   TCGA-BR-7717                    TCGA-BR-7722 
  "DEL PEAK 12(4Q35.1) MUTATED" "DEL PEAK 12(4Q35.1) WILD-TYPE" 
                   TCGA-BR-7723                    TCGA-BR-7851 
  "DEL PEAK 12(4Q35.1) MUTATED"   "DEL PEAK 12(4Q35.1) MUTATED" 
                   TCGA-BR-7901                    TCGA-BR-7957 
"DEL PEAK 12(4Q35.1) WILD-TYPE"   "DEL PEAK 12(4Q35.1) MUTATED" 
                   TCGA-BR-7958                    TCGA-BR-7959 
"DEL PEAK 12(4Q35.1) WILD-TYPE" "DEL PEAK 12(4Q35.1) WILD-TYPE" 
                   TCGA-BR-8059                    TCGA-BR-8060 
"DEL PEAK 12(4Q35.1) WILD-TYPE" "DEL PEAK 12(4Q35.1) WILD-TYPE" 
                   TCGA-BR-8077                    TCGA-BR-8078 
"DEL PEAK 12(4Q35.1) WILD-TYPE" "DEL PEAK 12(4Q35.1) WILD-TYPE" 
                   TCGA-BR-8080                    TCGA-BR-8081 
"DEL PEAK 12(4Q35.1) WILD-TYPE" "DEL PEAK 12(4Q35.1) WILD-TYPE" 
                   TCGA-BR-8284                    TCGA-BR-8285 
"DEL PEAK 12(4Q35.1) WILD-TYPE" "DEL PEAK 12(4Q35.1) WILD-TYPE" 
                   TCGA-BR-8286                    TCGA-BR-8289 
"DEL PEAK 12(4Q35.1) WILD-TYPE" "DEL PEAK 12(4Q35.1) WILD-TYPE" 
                   TCGA-BR-8291                    TCGA-BR-8295 
"DEL PEAK 12(4Q35.1) WILD-TYPE" "DEL PEAK 12(4Q35.1) WILD-TYPE" 
                   TCGA-BR-8296                    TCGA-BR-8297 
"DEL PEAK 12(4Q35.1) WILD-TYPE" "DEL PEAK 12(4Q35.1) WILD-TYPE" 
                   TCGA-CD-5798                    TCGA-CD-5799 
"DEL PEAK 12(4Q35.1) WILD-TYPE"   "DEL PEAK 12(4Q35.1) MUTATED" 
                   TCGA-CD-5800                    TCGA-CD-5801 
  "DEL PEAK 12(4Q35.1) MUTATED" "DEL PEAK 12(4Q35.1) WILD-TYPE" 
                   TCGA-CD-5802                    TCGA-CD-5803 
  "DEL PEAK 12(4Q35.1) MUTATED"   "DEL PEAK 12(4Q35.1) MUTATED" 
                   TCGA-CG-4300                    TCGA-CG-4301 
  "DEL PEAK 12(4Q35.1) MUTATED"   "DEL PEAK 12(4Q35.1) MUTATED" 
                   TCGA-CG-4304                    TCGA-CG-4305 
  "DEL PEAK 12(4Q35.1) MUTATED" "DEL PEAK 12(4Q35.1) WILD-TYPE" 
                   TCGA-CG-4306                    TCGA-CG-4436 
"DEL PEAK 12(4Q35.1) WILD-TYPE"   "DEL PEAK 12(4Q35.1) MUTATED" 
                   TCGA-CG-4437                    TCGA-CG-4438 
  "DEL PEAK 12(4Q35.1) MUTATED"   "DEL PEAK 12(4Q35.1) MUTATED" 
                   TCGA-CG-4440                    TCGA-CG-4441 
  "DEL PEAK 12(4Q35.1) MUTATED" "DEL PEAK 12(4Q35.1) WILD-TYPE" 
                   TCGA-CG-4443                    TCGA-CG-4444 
  "DEL PEAK 12(4Q35.1) MUTATED"   "DEL PEAK 12(4Q35.1) MUTATED" 
                   TCGA-CG-4449                    TCGA-CG-4455 
  "DEL PEAK 12(4Q35.1) MUTATED"   "DEL PEAK 12(4Q35.1) MUTATED" 
                   TCGA-CG-4460                    TCGA-CG-4462 
"DEL PEAK 12(4Q35.1) WILD-TYPE" "DEL PEAK 12(4Q35.1) WILD-TYPE" 
                   TCGA-CG-4465                    TCGA-CG-4466 
"DEL PEAK 12(4Q35.1) WILD-TYPE"   "DEL PEAK 12(4Q35.1) MUTATED" 
                   TCGA-CG-4469                    TCGA-CG-4472 
"DEL PEAK 12(4Q35.1) WILD-TYPE" "DEL PEAK 12(4Q35.1) WILD-TYPE" 
                   TCGA-CG-4474                    TCGA-CG-4477 
"DEL PEAK 12(4Q35.1) WILD-TYPE"   "DEL PEAK 12(4Q35.1) MUTATED" 
                   TCGA-CG-5716                    TCGA-CG-5717 
"DEL PEAK 12(4Q35.1) WILD-TYPE"   "DEL PEAK 12(4Q35.1) MUTATED" 
                   TCGA-CG-5718                    TCGA-CG-5719 
"DEL PEAK 12(4Q35.1) WILD-TYPE"   "DEL PEAK 12(4Q35.1) MUTATED" 
                   TCGA-CG-5720                    TCGA-CG-5721 
"DEL PEAK 12(4Q35.1) WILD-TYPE" "DEL PEAK 12(4Q35.1) WILD-TYPE" 
                   TCGA-CG-5722                    TCGA-CG-5723 
"DEL PEAK 12(4Q35.1) WILD-TYPE" "DEL PEAK 12(4Q35.1) WILD-TYPE" 
                   TCGA-CG-5724                    TCGA-CG-5725 
"DEL PEAK 12(4Q35.1) WILD-TYPE"   "DEL PEAK 12(4Q35.1) MUTATED" 
                   TCGA-CG-5726                    TCGA-CG-5727 
"DEL PEAK 12(4Q35.1) WILD-TYPE"   "DEL PEAK 12(4Q35.1) MUTATED" 
                   TCGA-CG-5728                    TCGA-CG-5730 
"DEL PEAK 12(4Q35.1) WILD-TYPE" "DEL PEAK 12(4Q35.1) WILD-TYPE" 
                   TCGA-CG-5732                    TCGA-CG-5733 
"DEL PEAK 12(4Q35.1) WILD-TYPE" "DEL PEAK 12(4Q35.1) WILD-TYPE" 
                   TCGA-CG-5734                    TCGA-D7-5577 
"DEL PEAK 12(4Q35.1) WILD-TYPE" "DEL PEAK 12(4Q35.1) WILD-TYPE" 
                   TCGA-D7-5578                    TCGA-D7-5579 
  "DEL PEAK 12(4Q35.1) MUTATED" "DEL PEAK 12(4Q35.1) WILD-TYPE" 
                   TCGA-D7-6518                    TCGA-D7-6519 
  "DEL PEAK 12(4Q35.1) MUTATED" "DEL PEAK 12(4Q35.1) WILD-TYPE" 
                   TCGA-D7-6520                    TCGA-D7-6521 
"DEL PEAK 12(4Q35.1) WILD-TYPE" "DEL PEAK 12(4Q35.1) WILD-TYPE" 
                   TCGA-D7-6522                    TCGA-D7-6524 
"DEL PEAK 12(4Q35.1) WILD-TYPE" "DEL PEAK 12(4Q35.1) WILD-TYPE" 
                   TCGA-D7-6525                    TCGA-D7-6526 
  "DEL PEAK 12(4Q35.1) MUTATED"   "DEL PEAK 12(4Q35.1) MUTATED" 
                   TCGA-D7-6527                    TCGA-D7-6528 
  "DEL PEAK 12(4Q35.1) MUTATED"   "DEL PEAK 12(4Q35.1) MUTATED" 
                   TCGA-D7-6815                    TCGA-D7-6817 
  "DEL PEAK 12(4Q35.1) MUTATED"   "DEL PEAK 12(4Q35.1) MUTATED" 
                   TCGA-D7-6818                    TCGA-D7-6820 
"DEL PEAK 12(4Q35.1) WILD-TYPE"   "DEL PEAK 12(4Q35.1) MUTATED" 
                   TCGA-D7-6822                    TCGA-EQ-5647 
  "DEL PEAK 12(4Q35.1) MUTATED"   "DEL PEAK 12(4Q35.1) MUTATED" 
                   TCGA-EQ-8122                    TCGA-F1-6177 
  "DEL PEAK 12(4Q35.1) MUTATED" "DEL PEAK 12(4Q35.1) WILD-TYPE" 
                   TCGA-F1-6874                    TCGA-F1-6875 
"DEL PEAK 12(4Q35.1) WILD-TYPE" "DEL PEAK 12(4Q35.1) WILD-TYPE" 
                   TCGA-FP-7735                    TCGA-FP-7829 
"DEL PEAK 12(4Q35.1) WILD-TYPE"   "DEL PEAK 12(4Q35.1) MUTATED" 
                   TCGA-FP-7916                    TCGA-FP-7998 
  "DEL PEAK 12(4Q35.1) MUTATED" "DEL PEAK 12(4Q35.1) WILD-TYPE" 
                   TCGA-HJ-7597                    TCGA-IN-7806 
"DEL PEAK 12(4Q35.1) WILD-TYPE" "DEL PEAK 12(4Q35.1) WILD-TYPE" 
                   TCGA-IN-7808                    TCGA-IP-7968 
"DEL PEAK 12(4Q35.1) WILD-TYPE"   "DEL PEAK 12(4Q35.1) MUTATED" 
                   TCGA-B7-5816                    TCGA-B7-5818 
"DEL PEAK 12(4Q35.1) WILD-TYPE" "DEL PEAK 12(4Q35.1) WILD-TYPE" 
                   TCGA-BR-6452                    TCGA-BR-6455 
"DEL PEAK 12(4Q35.1) WILD-TYPE" "DEL PEAK 12(4Q35.1) WILD-TYPE" 
                   TCGA-BR-6457                    TCGA-BR-6458 
"DEL PEAK 12(4Q35.1) WILD-TYPE"   "DEL PEAK 12(4Q35.1) MUTATED" 
                   TCGA-BR-6563                    TCGA-BR-6564 
"DEL PEAK 12(4Q35.1) WILD-TYPE" "DEL PEAK 12(4Q35.1) WILD-TYPE" 
                   TCGA-BR-6565                    TCGA-BR-6566 
  "DEL PEAK 12(4Q35.1) MUTATED" "DEL PEAK 12(4Q35.1) WILD-TYPE" 
                   TCGA-BR-6705                    TCGA-BR-6706 
  "DEL PEAK 12(4Q35.1) MUTATED" "DEL PEAK 12(4Q35.1) WILD-TYPE" 
                   TCGA-BR-6707                    TCGA-BR-6709 
"DEL PEAK 12(4Q35.1) WILD-TYPE"   "DEL PEAK 12(4Q35.1) MUTATED" 
                   TCGA-BR-6710                    TCGA-BR-6801 
"DEL PEAK 12(4Q35.1) WILD-TYPE" "DEL PEAK 12(4Q35.1) WILD-TYPE" 
                   TCGA-BR-6802                    TCGA-BR-6803 
"DEL PEAK 12(4Q35.1) WILD-TYPE"   "DEL PEAK 12(4Q35.1) MUTATED" 
                   TCGA-BR-6852                    TCGA-BR-7196 
"DEL PEAK 12(4Q35.1) WILD-TYPE" "DEL PEAK 12(4Q35.1) WILD-TYPE" 
                   TCGA-BR-7197                    TCGA-BR-7703 
  "DEL PEAK 12(4Q35.1) MUTATED" "DEL PEAK 12(4Q35.1) WILD-TYPE" 
                   TCGA-BR-7704                    TCGA-BR-7707 
"DEL PEAK 12(4Q35.1) WILD-TYPE" "DEL PEAK 12(4Q35.1) WILD-TYPE" 
                   TCGA-BR-7715                    TCGA-BR-7716 
  "DEL PEAK 12(4Q35.1) MUTATED" "DEL PEAK 12(4Q35.1) WILD-TYPE" 
                   TCGA-BR-7717                    TCGA-BR-7722 
  "DEL PEAK 12(4Q35.1) MUTATED" "DEL PEAK 12(4Q35.1) WILD-TYPE" 
                   TCGA-BR-7723                    TCGA-BR-7851 
  "DEL PEAK 12(4Q35.1) MUTATED"   "DEL PEAK 12(4Q35.1) MUTATED" 
                   TCGA-BR-7901                    TCGA-BR-7957 
"DEL PEAK 12(4Q35.1) WILD-TYPE"   "DEL PEAK 12(4Q35.1) MUTATED" 
                   TCGA-BR-7958                    TCGA-BR-7959 
"DEL PEAK 12(4Q35.1) WILD-TYPE" "DEL PEAK 12(4Q35.1) WILD-TYPE" 
                   TCGA-BR-8059                    TCGA-BR-8060 
"DEL PEAK 12(4Q35.1) WILD-TYPE" "DEL PEAK 12(4Q35.1) WILD-TYPE" 
                   TCGA-BR-8077                    TCGA-BR-8078 
"DEL PEAK 12(4Q35.1) WILD-TYPE" "DEL PEAK 12(4Q35.1) WILD-TYPE" 
                   TCGA-BR-8080                    TCGA-BR-8081 
"DEL PEAK 12(4Q35.1) WILD-TYPE" "DEL PEAK 12(4Q35.1) WILD-TYPE" 
                   TCGA-BR-8284                    TCGA-BR-8285 
"DEL PEAK 12(4Q35.1) WILD-TYPE" "DEL PEAK 12(4Q35.1) WILD-TYPE" 
                   TCGA-BR-8286                    TCGA-BR-8289 
"DEL PEAK 12(4Q35.1) WILD-TYPE" "DEL PEAK 12(4Q35.1) WILD-TYPE" 
                   TCGA-BR-8291                    TCGA-BR-8295 
"DEL PEAK 12(4Q35.1) WILD-TYPE" "DEL PEAK 12(4Q35.1) WILD-TYPE" 
                   TCGA-BR-8296                    TCGA-BR-8297 
"DEL PEAK 12(4Q35.1) WILD-TYPE" "DEL PEAK 12(4Q35.1) WILD-TYPE" 
                   TCGA-CD-5798                    TCGA-CD-5799 
"DEL PEAK 12(4Q35.1) WILD-TYPE"   "DEL PEAK 12(4Q35.1) MUTATED" 
                   TCGA-CD-5800                    TCGA-CD-5801 
  "DEL PEAK 12(4Q35.1) MUTATED" "DEL PEAK 12(4Q35.1) WILD-TYPE" 
                   TCGA-CD-5802                    TCGA-CD-5803 
  "DEL PEAK 12(4Q35.1) MUTATED"   "DEL PEAK 12(4Q35.1) MUTATED" 
                   TCGA-CG-4300                    TCGA-CG-4301 
  "DEL PEAK 12(4Q35.1) MUTATED"   "DEL PEAK 12(4Q35.1) MUTATED" 
                   TCGA-CG-4304                    TCGA-CG-4305 
  "DEL PEAK 12(4Q35.1) MUTATED" "DEL PEAK 12(4Q35.1) WILD-TYPE" 
                   TCGA-CG-4306                    TCGA-CG-4436 
"DEL PEAK 12(4Q35.1) WILD-TYPE"   "DEL PEAK 12(4Q35.1) MUTATED" 
                   TCGA-CG-4437                    TCGA-CG-4438 
  "DEL PEAK 12(4Q35.1) MUTATED"   "DEL PEAK 12(4Q35.1) MUTATED" 
                   TCGA-CG-4440                    TCGA-CG-4441 
  "DEL PEAK 12(4Q35.1) MUTATED" "DEL PEAK 12(4Q35.1) WILD-TYPE" 
                   TCGA-CG-4443                    TCGA-CG-4444 
  "DEL PEAK 12(4Q35.1) MUTATED"   "DEL PEAK 12(4Q35.1) MUTATED" 
                   TCGA-CG-4449                    TCGA-CG-4455 
  "DEL PEAK 12(4Q35.1) MUTATED"   "DEL PEAK 12(4Q35.1) MUTATED" 
                   TCGA-CG-4460                    TCGA-CG-4462 
"DEL PEAK 12(4Q35.1) WILD-TYPE" "DEL PEAK 12(4Q35.1) WILD-TYPE" 
                   TCGA-CG-4465                    TCGA-CG-4466 
"DEL PEAK 12(4Q35.1) WILD-TYPE"   "DEL PEAK 12(4Q35.1) MUTATED" 
                   TCGA-CG-4469                    TCGA-CG-4472 
"DEL PEAK 12(4Q35.1) WILD-TYPE" "DEL PEAK 12(4Q35.1) WILD-TYPE" 
                   TCGA-CG-4474                    TCGA-CG-4477 
"DEL PEAK 12(4Q35.1) WILD-TYPE"   "DEL PEAK 12(4Q35.1) MUTATED" 
                   TCGA-CG-5716                    TCGA-CG-5717 
"DEL PEAK 12(4Q35.1) WILD-TYPE"   "DEL PEAK 12(4Q35.1) MUTATED" 
                   TCGA-CG-5718                    TCGA-CG-5719 
"DEL PEAK 12(4Q35.1) WILD-TYPE"   "DEL PEAK 12(4Q35.1) MUTATED" 
                   TCGA-CG-5720                    TCGA-CG-5721 
"DEL PEAK 12(4Q35.1) WILD-TYPE" "DEL PEAK 12(4Q35.1) WILD-TYPE" 
                   TCGA-CG-5722                    TCGA-CG-5723 
"DEL PEAK 12(4Q35.1) WILD-TYPE" "DEL PEAK 12(4Q35.1) WILD-TYPE" 
                   TCGA-CG-5724                    TCGA-CG-5725 
"DEL PEAK 12(4Q35.1) WILD-TYPE"   "DEL PEAK 12(4Q35.1) MUTATED" 
                   TCGA-CG-5726                    TCGA-CG-5727 
"DEL PEAK 12(4Q35.1) WILD-TYPE"   "DEL PEAK 12(4Q35.1) MUTATED" 
                   TCGA-CG-5728                    TCGA-CG-5730 
"DEL PEAK 12(4Q35.1) WILD-TYPE" "DEL PEAK 12(4Q35.1) WILD-TYPE" 
                   TCGA-CG-5732                    TCGA-CG-5733 
"DEL PEAK 12(4Q35.1) WILD-TYPE" "DEL PEAK 12(4Q35.1) WILD-TYPE" 
                   TCGA-CG-5734                    TCGA-D7-5577 
"DEL PEAK 12(4Q35.1) WILD-TYPE" "DEL PEAK 12(4Q35.1) WILD-TYPE" 
                   TCGA-D7-5578                    TCGA-D7-5579 
  "DEL PEAK 12(4Q35.1) MUTATED" "DEL PEAK 12(4Q35.1) WILD-TYPE" 
                   TCGA-D7-6518                    TCGA-D7-6519 
  "DEL PEAK 12(4Q35.1) MUTATED" "DEL PEAK 12(4Q35.1) WILD-TYPE" 
                   TCGA-D7-6520                    TCGA-D7-6521 
"DEL PEAK 12(4Q35.1) WILD-TYPE" "DEL PEAK 12(4Q35.1) WILD-TYPE" 
                   TCGA-D7-6522                    TCGA-D7-6524 
"DEL PEAK 12(4Q35.1) WILD-TYPE" "DEL PEAK 12(4Q35.1) WILD-TYPE" 
                   TCGA-D7-6525                    TCGA-D7-6526 
  "DEL PEAK 12(4Q35.1) MUTATED"   "DEL PEAK 12(4Q35.1) MUTATED" 
                   TCGA-D7-6527                    TCGA-D7-6528 
  "DEL PEAK 12(4Q35.1) MUTATED"   "DEL PEAK 12(4Q35.1) MUTATED" 
                   TCGA-D7-6815                    TCGA-D7-6817 
  "DEL PEAK 12(4Q35.1) MUTATED"   "DEL PEAK 12(4Q35.1) MUTATED" 
                   TCGA-D7-6818                    TCGA-D7-6820 
"DEL PEAK 12(4Q35.1) WILD-TYPE"   "DEL PEAK 12(4Q35.1) MUTATED" 
                   TCGA-D7-6822                    TCGA-EQ-5647 
  "DEL PEAK 12(4Q35.1) MUTATED"   "DEL PEAK 12(4Q35.1) MUTATED" 
                   TCGA-EQ-8122                    TCGA-F1-6177 
  "DEL PEAK 12(4Q35.1) MUTATED" "DEL PEAK 12(4Q35.1) WILD-TYPE" 
                   TCGA-F1-6874                    TCGA-F1-6875 
"DEL PEAK 12(4Q35.1) WILD-TYPE" "DEL PEAK 12(4Q35.1) WILD-TYPE" 
                   TCGA-FP-7735                    TCGA-FP-7829 
"DEL PEAK 12(4Q35.1) WILD-TYPE"   "DEL PEAK 12(4Q35.1) MUTATED" 
                   TCGA-FP-7916                    TCGA-FP-7998 
  "DEL PEAK 12(4Q35.1) MUTATED" "DEL PEAK 12(4Q35.1) WILD-TYPE" 
                   TCGA-HJ-7597                    TCGA-IN-7806 
"DEL PEAK 12(4Q35.1) WILD-TYPE" "DEL PEAK 12(4Q35.1) WILD-TYPE" 
                   TCGA-IN-7808                    TCGA-IP-7968 
"DEL PEAK 12(4Q35.1) WILD-TYPE"   "DEL PEAK 12(4Q35.1) MUTATED" 
                   TCGA-B7-5816                    TCGA-B7-5818 
"DEL PEAK 12(4Q35.1) WILD-TYPE" "DEL PEAK 12(4Q35.1) WILD-TYPE" 
                   TCGA-BR-6452                    TCGA-BR-6455 
"DEL PEAK 12(4Q35.1) WILD-TYPE" "DEL PEAK 12(4Q35.1) WILD-TYPE" 
                   TCGA-BR-6457                    TCGA-BR-6458 
"DEL PEAK 12(4Q35.1) WILD-TYPE"   "DEL PEAK 12(4Q35.1) MUTATED" 
                   TCGA-BR-6563                    TCGA-BR-6564 
"DEL PEAK 12(4Q35.1) WILD-TYPE" "DEL PEAK 12(4Q35.1) WILD-TYPE" 
                   TCGA-BR-6565                    TCGA-BR-6566 
  "DEL PEAK 12(4Q35.1) MUTATED" "DEL PEAK 12(4Q35.1) WILD-TYPE" 
                   TCGA-BR-6705                    TCGA-BR-6706 
  "DEL PEAK 12(4Q35.1) MUTATED" "DEL PEAK 12(4Q35.1) WILD-TYPE" 
                   TCGA-BR-6707                    TCGA-BR-6709 
"DEL PEAK 12(4Q35.1) WILD-TYPE"   "DEL PEAK 12(4Q35.1) MUTATED" 
                   TCGA-BR-6710                    TCGA-BR-6801 
"DEL PEAK 12(4Q35.1) WILD-TYPE" "DEL PEAK 12(4Q35.1) WILD-TYPE" 
                   TCGA-BR-6802                    TCGA-BR-6803 
"DEL PEAK 12(4Q35.1) WILD-TYPE"   "DEL PEAK 12(4Q35.1) MUTATED" 
                   TCGA-BR-6852                    TCGA-BR-7196 
"DEL PEAK 12(4Q35.1) WILD-TYPE" "DEL PEAK 12(4Q35.1) WILD-TYPE" 
                   TCGA-BR-7197                    TCGA-BR-7703 
  "DEL PEAK 12(4Q35.1) MUTATED" "DEL PEAK 12(4Q35.1) WILD-TYPE" 
                   TCGA-BR-7704                    TCGA-BR-7707 
"DEL PEAK 12(4Q35.1) WILD-TYPE" "DEL PEAK 12(4Q35.1) WILD-TYPE" 
                   TCGA-BR-7715                    TCGA-BR-7716 
  "DEL PEAK 12(4Q35.1) MUTATED" "DEL PEAK 12(4Q35.1) WILD-TYPE" 
                   TCGA-BR-7717                    TCGA-BR-7722 
  "DEL PEAK 12(4Q35.1) MUTATED" "DEL PEAK 12(4Q35.1) WILD-TYPE" 
                   TCGA-BR-7723                    TCGA-BR-7851 
  "DEL PEAK 12(4Q35.1) MUTATED"   "DEL PEAK 12(4Q35.1) MUTATED" 
                   TCGA-BR-7901                    TCGA-BR-7957 
"DEL PEAK 12(4Q35.1) WILD-TYPE"   "DEL PEAK 12(4Q35.1) MUTATED" 
                   TCGA-BR-7958                    TCGA-BR-7959 
"DEL PEAK 12(4Q35.1) WILD-TYPE" "DEL PEAK 12(4Q35.1) WILD-TYPE" 
                   TCGA-BR-8059                    TCGA-BR-8060 
"DEL PEAK 12(4Q35.1) WILD-TYPE" "DEL PEAK 12(4Q35.1) WILD-TYPE" 
                   TCGA-BR-8077                    TCGA-BR-8078 
"DEL PEAK 12(4Q35.1) WILD-TYPE" "DEL PEAK 12(4Q35.1) WILD-TYPE" 
                   TCGA-BR-8080                    TCGA-BR-8081 
"DEL PEAK 12(4Q35.1) WILD-TYPE" "DEL PEAK 12(4Q35.1) WILD-TYPE" 
                   TCGA-BR-8284                    TCGA-BR-8285 
"DEL PEAK 12(4Q35.1) WILD-TYPE" "DEL PEAK 12(4Q35.1) WILD-TYPE" 
                   TCGA-BR-8286                    TCGA-BR-8289 
"DEL PEAK 12(4Q35.1) WILD-TYPE" "DEL PEAK 12(4Q35.1) WILD-TYPE" 
                   TCGA-BR-8291                    TCGA-BR-8295 
"DEL PEAK 12(4Q35.1) WILD-TYPE" "DEL PEAK 12(4Q35.1) WILD-TYPE" 
                   TCGA-BR-8296                    TCGA-BR-8297 
"DEL PEAK 12(4Q35.1) WILD-TYPE" "DEL PEAK 12(4Q35.1) WILD-TYPE" 
                   TCGA-CD-5798                    TCGA-CD-5799 
"DEL PEAK 12(4Q35.1) WILD-TYPE"   "DEL PEAK 12(4Q35.1) MUTATED" 
                   TCGA-CD-5800                    TCGA-CD-5801 
  "DEL PEAK 12(4Q35.1) MUTATED" "DEL PEAK 12(4Q35.1) WILD-TYPE" 
                   TCGA-CD-5802                    TCGA-CD-5803 
  "DEL PEAK 12(4Q35.1) MUTATED"   "DEL PEAK 12(4Q35.1) MUTATED" 
                   TCGA-CG-4300                    TCGA-CG-4301 
  "DEL PEAK 12(4Q35.1) MUTATED"   "DEL PEAK 12(4Q35.1) MUTATED" 
                   TCGA-CG-4304                    TCGA-CG-4305 
  "DEL PEAK 12(4Q35.1) MUTATED" "DEL PEAK 12(4Q35.1) WILD-TYPE" 
                   TCGA-CG-4306                    TCGA-CG-4436 
"DEL PEAK 12(4Q35.1) WILD-TYPE"   "DEL PEAK 12(4Q35.1) MUTATED" 
                   TCGA-CG-4437                    TCGA-CG-4438 
  "DEL PEAK 12(4Q35.1) MUTATED"   "DEL PEAK 12(4Q35.1) MUTATED" 
                   TCGA-CG-4440                    TCGA-CG-4441 
  "DEL PEAK 12(4Q35.1) MUTATED" "DEL PEAK 12(4Q35.1) WILD-TYPE" 
                   TCGA-CG-4443                    TCGA-CG-4444 
  "DEL PEAK 12(4Q35.1) MUTATED"   "DEL PEAK 12(4Q35.1) MUTATED" 
                   TCGA-CG-4449                    TCGA-CG-4455 
  "DEL PEAK 12(4Q35.1) MUTATED"   "DEL PEAK 12(4Q35.1) MUTATED" 
                   TCGA-CG-4460                    TCGA-CG-4462 
"DEL PEAK 12(4Q35.1) WILD-TYPE" "DEL PEAK 12(4Q35.1) WILD-TYPE" 
                   TCGA-CG-4465                    TCGA-CG-4466 
"DEL PEAK 12(4Q35.1) WILD-TYPE"   "DEL PEAK 12(4Q35.1) MUTATED" 
                   TCGA-CG-4469                    TCGA-CG-4472 
"DEL PEAK 12(4Q35.1) WILD-TYPE" "DEL PEAK 12(4Q35.1) WILD-TYPE" 
                   TCGA-CG-4474                    TCGA-CG-4477 
"DEL PEAK 12(4Q35.1) WILD-TYPE"   "DEL PEAK 12(4Q35.1) MUTATED" 
                   TCGA-CG-5716                    TCGA-CG-5717 
"DEL PEAK 12(4Q35.1) WILD-TYPE"   "DEL PEAK 12(4Q35.1) MUTATED" 
                   TCGA-CG-5718                    TCGA-CG-5719 
"DEL PEAK 12(4Q35.1) WILD-TYPE"   "DEL PEAK 12(4Q35.1) MUTATED" 
                   TCGA-CG-5720                    TCGA-CG-5721 
"DEL PEAK 12(4Q35.1) WILD-TYPE" "DEL PEAK 12(4Q35.1) WILD-TYPE" 
                   TCGA-CG-5722                    TCGA-CG-5723 
"DEL PEAK 12(4Q35.1) WILD-TYPE" "DEL PEAK 12(4Q35.1) WILD-TYPE" 
                   TCGA-CG-5724                    TCGA-CG-5725 
"DEL PEAK 12(4Q35.1) WILD-TYPE"   "DEL PEAK 12(4Q35.1) MUTATED" 
                   TCGA-CG-5726                    TCGA-CG-5727 
"DEL PEAK 12(4Q35.1) WILD-TYPE"   "DEL PEAK 12(4Q35.1) MUTATED" 
                   TCGA-CG-5728                    TCGA-CG-5730 
"DEL PEAK 12(4Q35.1) WILD-TYPE" "DEL PEAK 12(4Q35.1) WILD-TYPE" 
                   TCGA-CG-5732                    TCGA-CG-5733 
"DEL PEAK 12(4Q35.1) WILD-TYPE" "DEL PEAK 12(4Q35.1) WILD-TYPE" 
                   TCGA-CG-5734                    TCGA-D7-5577 
"DEL PEAK 12(4Q35.1) WILD-TYPE" "DEL PEAK 12(4Q35.1) WILD-TYPE" 
                   TCGA-D7-5578                    TCGA-D7-5579 
  "DEL PEAK 12(4Q35.1) MUTATED" "DEL PEAK 12(4Q35.1) WILD-TYPE" 
                   TCGA-D7-6518                    TCGA-D7-6519 
  "DEL PEAK 12(4Q35.1) MUTATED" "DEL PEAK 12(4Q35.1) WILD-TYPE" 
                   TCGA-D7-6520                    TCGA-D7-6521 
"DEL PEAK 12(4Q35.1) WILD-TYPE" "DEL PEAK 12(4Q35.1) WILD-TYPE" 
                   TCGA-D7-6522                    TCGA-D7-6524 
"DEL PEAK 12(4Q35.1) WILD-TYPE" "DEL PEAK 12(4Q35.1) WILD-TYPE" 
                   TCGA-D7-6525                    TCGA-D7-6526 
  "DEL PEAK 12(4Q35.1) MUTATED"   "DEL PEAK 12(4Q35.1) MUTATED" 
                   TCGA-D7-6527                    TCGA-D7-6528 
  "DEL PEAK 12(4Q35.1) MUTATED"   "DEL PEAK 12(4Q35.1) MUTATED" 
                   TCGA-D7-6815                    TCGA-D7-6817 
  "DEL PEAK 12(4Q35.1) MUTATED"   "DEL PEAK 12(4Q35.1) MUTATED" 
                   TCGA-D7-6818                    TCGA-D7-6820 
"DEL PEAK 12(4Q35.1) WILD-TYPE"   "DEL PEAK 12(4Q35.1) MUTATED" 
                   TCGA-D7-6822                    TCGA-EQ-5647 
  "DEL PEAK 12(4Q35.1) MUTATED"   "DEL PEAK 12(4Q35.1) MUTATED" 
                   TCGA-EQ-8122                    TCGA-F1-6177 
  "DEL PEAK 12(4Q35.1) MUTATED" "DEL PEAK 12(4Q35.1) WILD-TYPE" 
                   TCGA-F1-6874                    TCGA-F1-6875 
"DEL PEAK 12(4Q35.1) WILD-TYPE" "DEL PEAK 12(4Q35.1) WILD-TYPE" 
                   TCGA-FP-7735                    TCGA-FP-7829 
"DEL PEAK 12(4Q35.1) WILD-TYPE"   "DEL PEAK 12(4Q35.1) MUTATED" 
                   TCGA-FP-7916                    TCGA-FP-7998 
  "DEL PEAK 12(4Q35.1) MUTATED" "DEL PEAK 12(4Q35.1) WILD-TYPE" 
                   TCGA-HJ-7597                    TCGA-IN-7806 
"DEL PEAK 12(4Q35.1) WILD-TYPE" "DEL PEAK 12(4Q35.1) WILD-TYPE" 
                   TCGA-IN-7808                    TCGA-IP-7968 
"DEL PEAK 12(4Q35.1) WILD-TYPE"   "DEL PEAK 12(4Q35.1) MUTATED" 
[1] "hr=" "2.3"
D38V2, continuous
D38V3, binary
[1] "tbl2"
                               cls
clus                            [,1] [,2]
  DEL PEAK 12(4Q35.1) MUTATED     21   38
  DEL PEAK 12(4Q35.1) WILD-TYPE   44   58
        clus
vv       DEL PEAK 12(4Q35.1) MUTATED DEL PEAK 12(4Q35.1) WILD-TYPE
  FEMALE                          21                            44
  MALE                            38                            58
D38V4, multiclass
D38V5, multiclass
    clus
vv   DEL PEAK 12(4Q35.1) MUTATED DEL PEAK 12(4Q35.1) WILD-TYPE
  T1                           1                             5
  T2                          22                            31
  T3                          24                            35
  T4                           7                            26
D38V6, multiclass
    clus
vv   DEL PEAK 12(4Q35.1) MUTATED DEL PEAK 12(4Q35.1) WILD-TYPE
  N0                          19                            31
  N1                          17                            40
  N2                          12                            12
  N3                           7                            12
D38V7, multiclass
    clus
vv   DEL PEAK 12(4Q35.1) MUTATED DEL PEAK 12(4Q35.1) WILD-TYPE
  M0                          50                            82
  M1                           5                            13
  MX                           4                             7
D38V8, multiclass
     clus
vv    DEL PEAK 12(4Q35.1) MUTATED DEL PEAK 12(4Q35.1) WILD-TYPE
  I                             9                            16
  II                           22                            21
  III                          13                            35
  IV                            9                            20
D38V9, binary
[1] "tbl2"
                               cls
clus                            [,1] [,2]
  DEL PEAK 12(4Q35.1) MUTATED     56    3
  DEL PEAK 12(4Q35.1) WILD-TYPE  100    2
     clus
vv    DEL PEAK 12(4Q35.1) MUTATED DEL PEAK 12(4Q35.1) WILD-TYPE
  NO                            3                             2
  YES                          56                           100

Clustering(39) Variable = Del Peak 13(5q11.2) mutation analysis
D39V1, survival
                   TCGA-B7-5816                    TCGA-B7-5818 
"DEL PEAK 13(5Q11.2) WILD-TYPE" "DEL PEAK 13(5Q11.2) WILD-TYPE" 
                   TCGA-BR-6452                    TCGA-BR-6455 
"DEL PEAK 13(5Q11.2) WILD-TYPE" "DEL PEAK 13(5Q11.2) WILD-TYPE" 
                   TCGA-BR-6457                    TCGA-BR-6458 
"DEL PEAK 13(5Q11.2) WILD-TYPE"   "DEL PEAK 13(5Q11.2) MUTATED" 
                   TCGA-BR-6563                    TCGA-BR-6564 
"DEL PEAK 13(5Q11.2) WILD-TYPE" "DEL PEAK 13(5Q11.2) WILD-TYPE" 
                   TCGA-BR-6565                    TCGA-BR-6566 
  "DEL PEAK 13(5Q11.2) MUTATED" "DEL PEAK 13(5Q11.2) WILD-TYPE" 
                   TCGA-BR-6705                    TCGA-BR-6706 
"DEL PEAK 13(5Q11.2) WILD-TYPE" "DEL PEAK 13(5Q11.2) WILD-TYPE" 
                   TCGA-BR-6707                    TCGA-BR-6709 
"DEL PEAK 13(5Q11.2) WILD-TYPE"   "DEL PEAK 13(5Q11.2) MUTATED" 
                   TCGA-BR-6710                    TCGA-BR-6801 
"DEL PEAK 13(5Q11.2) WILD-TYPE" "DEL PEAK 13(5Q11.2) WILD-TYPE" 
                   TCGA-BR-6802                    TCGA-BR-6803 
"DEL PEAK 13(5Q11.2) WILD-TYPE" "DEL PEAK 13(5Q11.2) WILD-TYPE" 
                   TCGA-BR-6852                    TCGA-BR-7196 
"DEL PEAK 13(5Q11.2) WILD-TYPE" "DEL PEAK 13(5Q11.2) WILD-TYPE" 
                   TCGA-BR-7197                    TCGA-BR-7703 
"DEL PEAK 13(5Q11.2) WILD-TYPE" "DEL PEAK 13(5Q11.2) WILD-TYPE" 
                   TCGA-BR-7704                    TCGA-BR-7707 
"DEL PEAK 13(5Q11.2) WILD-TYPE" "DEL PEAK 13(5Q11.2) WILD-TYPE" 
                   TCGA-BR-7715                    TCGA-BR-7716 
  "DEL PEAK 13(5Q11.2) MUTATED"   "DEL PEAK 13(5Q11.2) MUTATED" 
                   TCGA-BR-7717                    TCGA-BR-7722 
"DEL PEAK 13(5Q11.2) WILD-TYPE" "DEL PEAK 13(5Q11.2) WILD-TYPE" 
                   TCGA-BR-7723                    TCGA-BR-7851 
"DEL PEAK 13(5Q11.2) WILD-TYPE" "DEL PEAK 13(5Q11.2) WILD-TYPE" 
                   TCGA-BR-7901                    TCGA-BR-7957 
  "DEL PEAK 13(5Q11.2) MUTATED" "DEL PEAK 13(5Q11.2) WILD-TYPE" 
                   TCGA-BR-7958                    TCGA-BR-7959 
"DEL PEAK 13(5Q11.2) WILD-TYPE" "DEL PEAK 13(5Q11.2) WILD-TYPE" 
                   TCGA-BR-8059                    TCGA-BR-8060 
"DEL PEAK 13(5Q11.2) WILD-TYPE" "DEL PEAK 13(5Q11.2) WILD-TYPE" 
                   TCGA-BR-8077                    TCGA-BR-8078 
"DEL PEAK 13(5Q11.2) WILD-TYPE" "DEL PEAK 13(5Q11.2) WILD-TYPE" 
                   TCGA-BR-8080                    TCGA-BR-8081 
"DEL PEAK 13(5Q11.2) WILD-TYPE" "DEL PEAK 13(5Q11.2) WILD-TYPE" 
                   TCGA-BR-8284                    TCGA-BR-8285 
"DEL PEAK 13(5Q11.2) WILD-TYPE" "DEL PEAK 13(5Q11.2) WILD-TYPE" 
                   TCGA-BR-8286                    TCGA-BR-8289 
"DEL PEAK 13(5Q11.2) WILD-TYPE" "DEL PEAK 13(5Q11.2) WILD-TYPE" 
                   TCGA-BR-8291                    TCGA-BR-8295 
"DEL PEAK 13(5Q11.2) WILD-TYPE" "DEL PEAK 13(5Q11.2) WILD-TYPE" 
                   TCGA-BR-8296                    TCGA-BR-8297 
"DEL PEAK 13(5Q11.2) WILD-TYPE" "DEL PEAK 13(5Q11.2) WILD-TYPE" 
                   TCGA-CD-5798                    TCGA-CD-5799 
"DEL PEAK 13(5Q11.2) WILD-TYPE" "DEL PEAK 13(5Q11.2) WILD-TYPE" 
                   TCGA-CD-5800                    TCGA-CD-5801 
  "DEL PEAK 13(5Q11.2) MUTATED"   "DEL PEAK 13(5Q11.2) MUTATED" 
                   TCGA-CD-5802                    TCGA-CD-5803 
  "DEL PEAK 13(5Q11.2) MUTATED" "DEL PEAK 13(5Q11.2) WILD-TYPE" 
                   TCGA-CG-4300                    TCGA-CG-4301 
"DEL PEAK 13(5Q11.2) WILD-TYPE" "DEL PEAK 13(5Q11.2) WILD-TYPE" 
                   TCGA-CG-4304                    TCGA-CG-4305 
  "DEL PEAK 13(5Q11.2) MUTATED" "DEL PEAK 13(5Q11.2) WILD-TYPE" 
                   TCGA-CG-4306                    TCGA-CG-4436 
"DEL PEAK 13(5Q11.2) WILD-TYPE"   "DEL PEAK 13(5Q11.2) MUTATED" 
                   TCGA-CG-4437                    TCGA-CG-4438 
"DEL PEAK 13(5Q11.2) WILD-TYPE" "DEL PEAK 13(5Q11.2) WILD-TYPE" 
                   TCGA-CG-4440                    TCGA-CG-4441 
  "DEL PEAK 13(5Q11.2) MUTATED"   "DEL PEAK 13(5Q11.2) MUTATED" 
                   TCGA-CG-4443                    TCGA-CG-4444 
"DEL PEAK 13(5Q11.2) WILD-TYPE"   "DEL PEAK 13(5Q11.2) MUTATED" 
                   TCGA-CG-4449                    TCGA-CG-4455 
  "DEL PEAK 13(5Q11.2) MUTATED"   "DEL PEAK 13(5Q11.2) MUTATED" 
                   TCGA-CG-4460                    TCGA-CG-4462 
"DEL PEAK 13(5Q11.2) WILD-TYPE" "DEL PEAK 13(5Q11.2) WILD-TYPE" 
                   TCGA-CG-4465                    TCGA-CG-4466 
"DEL PEAK 13(5Q11.2) WILD-TYPE"   "DEL PEAK 13(5Q11.2) MUTATED" 
                   TCGA-CG-4469                    TCGA-CG-4472 
"DEL PEAK 13(5Q11.2) WILD-TYPE" "DEL PEAK 13(5Q11.2) WILD-TYPE" 
                   TCGA-CG-4474                    TCGA-CG-4477 
"DEL PEAK 13(5Q11.2) WILD-TYPE"   "DEL PEAK 13(5Q11.2) MUTATED" 
                   TCGA-CG-5716                    TCGA-CG-5717 
"DEL PEAK 13(5Q11.2) WILD-TYPE" "DEL PEAK 13(5Q11.2) WILD-TYPE" 
                   TCGA-CG-5718                    TCGA-CG-5719 
  "DEL PEAK 13(5Q11.2) MUTATED" "DEL PEAK 13(5Q11.2) WILD-TYPE" 
                   TCGA-CG-5720                    TCGA-CG-5721 
"DEL PEAK 13(5Q11.2) WILD-TYPE" "DEL PEAK 13(5Q11.2) WILD-TYPE" 
                   TCGA-CG-5722                    TCGA-CG-5723 
"DEL PEAK 13(5Q11.2) WILD-TYPE" "DEL PEAK 13(5Q11.2) WILD-TYPE" 
                   TCGA-CG-5724                    TCGA-CG-5725 
"DEL PEAK 13(5Q11.2) WILD-TYPE"   "DEL PEAK 13(5Q11.2) MUTATED" 
                   TCGA-CG-5726                    TCGA-CG-5727 
"DEL PEAK 13(5Q11.2) WILD-TYPE" "DEL PEAK 13(5Q11.2) WILD-TYPE" 
                   TCGA-CG-5728                    TCGA-CG-5730 
"DEL PEAK 13(5Q11.2) WILD-TYPE" "DEL PEAK 13(5Q11.2) WILD-TYPE" 
                   TCGA-CG-5732                    TCGA-CG-5733 
  "DEL PEAK 13(5Q11.2) MUTATED" "DEL PEAK 13(5Q11.2) WILD-TYPE" 
                   TCGA-CG-5734                    TCGA-D7-5577 
"DEL PEAK 13(5Q11.2) WILD-TYPE" "DEL PEAK 13(5Q11.2) WILD-TYPE" 
                   TCGA-D7-5578                    TCGA-D7-5579 
"DEL PEAK 13(5Q11.2) WILD-TYPE"   "DEL PEAK 13(5Q11.2) MUTATED" 
                   TCGA-D7-6518                    TCGA-D7-6519 
"DEL PEAK 13(5Q11.2) WILD-TYPE" "DEL PEAK 13(5Q11.2) WILD-TYPE" 
                   TCGA-D7-6520                    TCGA-D7-6521 
  "DEL PEAK 13(5Q11.2) MUTATED" "DEL PEAK 13(5Q11.2) WILD-TYPE" 
                   TCGA-D7-6522                    TCGA-D7-6524 
"DEL PEAK 13(5Q11.2) WILD-TYPE" "DEL PEAK 13(5Q11.2) WILD-TYPE" 
                   TCGA-D7-6525                    TCGA-D7-6526 
  "DEL PEAK 13(5Q11.2) MUTATED"   "DEL PEAK 13(5Q11.2) MUTATED" 
                   TCGA-D7-6527                    TCGA-D7-6528 
  "DEL PEAK 13(5Q11.2) MUTATED"   "DEL PEAK 13(5Q11.2) MUTATED" 
                   TCGA-D7-6815                    TCGA-D7-6817 
  "DEL PEAK 13(5Q11.2) MUTATED"   "DEL PEAK 13(5Q11.2) MUTATED" 
                   TCGA-D7-6818                    TCGA-D7-6820 
"DEL PEAK 13(5Q11.2) WILD-TYPE"   "DEL PEAK 13(5Q11.2) MUTATED" 
                   TCGA-D7-6822                    TCGA-EQ-5647 
  "DEL PEAK 13(5Q11.2) MUTATED"   "DEL PEAK 13(5Q11.2) MUTATED" 
                   TCGA-EQ-8122                    TCGA-F1-6177 
  "DEL PEAK 13(5Q11.2) MUTATED" "DEL PEAK 13(5Q11.2) WILD-TYPE" 
                   TCGA-F1-6874                    TCGA-F1-6875 
"DEL PEAK 13(5Q11.2) WILD-TYPE"   "DEL PEAK 13(5Q11.2) MUTATED" 
                   TCGA-FP-7735                    TCGA-FP-7829 
"DEL PEAK 13(5Q11.2) WILD-TYPE"   "DEL PEAK 13(5Q11.2) MUTATED" 
                   TCGA-FP-7916                    TCGA-FP-7998 
"DEL PEAK 13(5Q11.2) WILD-TYPE" "DEL PEAK 13(5Q11.2) WILD-TYPE" 
                   TCGA-HJ-7597                    TCGA-IN-7806 
"DEL PEAK 13(5Q11.2) WILD-TYPE"   "DEL PEAK 13(5Q11.2) MUTATED" 
                   TCGA-IN-7808                    TCGA-IP-7968 
"DEL PEAK 13(5Q11.2) WILD-TYPE"   "DEL PEAK 13(5Q11.2) MUTATED" 
                   TCGA-B7-5816                    TCGA-B7-5818 
"DEL PEAK 13(5Q11.2) WILD-TYPE" "DEL PEAK 13(5Q11.2) WILD-TYPE" 
                   TCGA-BR-6452                    TCGA-BR-6455 
"DEL PEAK 13(5Q11.2) WILD-TYPE" "DEL PEAK 13(5Q11.2) WILD-TYPE" 
                   TCGA-BR-6457                    TCGA-BR-6458 
"DEL PEAK 13(5Q11.2) WILD-TYPE"   "DEL PEAK 13(5Q11.2) MUTATED" 
                   TCGA-BR-6563                    TCGA-BR-6564 
"DEL PEAK 13(5Q11.2) WILD-TYPE" "DEL PEAK 13(5Q11.2) WILD-TYPE" 
                   TCGA-BR-6565                    TCGA-BR-6566 
  "DEL PEAK 13(5Q11.2) MUTATED" "DEL PEAK 13(5Q11.2) WILD-TYPE" 
                   TCGA-BR-6705                    TCGA-BR-6706 
"DEL PEAK 13(5Q11.2) WILD-TYPE" "DEL PEAK 13(5Q11.2) WILD-TYPE" 
                   TCGA-BR-6707                    TCGA-BR-6709 
"DEL PEAK 13(5Q11.2) WILD-TYPE"   "DEL PEAK 13(5Q11.2) MUTATED" 
                   TCGA-BR-6710                    TCGA-BR-6801 
"DEL PEAK 13(5Q11.2) WILD-TYPE" "DEL PEAK 13(5Q11.2) WILD-TYPE" 
                   TCGA-BR-6802                    TCGA-BR-6803 
"DEL PEAK 13(5Q11.2) WILD-TYPE" "DEL PEAK 13(5Q11.2) WILD-TYPE" 
                   TCGA-BR-6852                    TCGA-BR-7196 
"DEL PEAK 13(5Q11.2) WILD-TYPE" "DEL PEAK 13(5Q11.2) WILD-TYPE" 
                   TCGA-BR-7197                    TCGA-BR-7703 
"DEL PEAK 13(5Q11.2) WILD-TYPE" "DEL PEAK 13(5Q11.2) WILD-TYPE" 
                   TCGA-BR-7704                    TCGA-BR-7707 
"DEL PEAK 13(5Q11.2) WILD-TYPE" "DEL PEAK 13(5Q11.2) WILD-TYPE" 
                   TCGA-BR-7715                    TCGA-BR-7716 
  "DEL PEAK 13(5Q11.2) MUTATED"   "DEL PEAK 13(5Q11.2) MUTATED" 
                   TCGA-BR-7717                    TCGA-BR-7722 
"DEL PEAK 13(5Q11.2) WILD-TYPE" "DEL PEAK 13(5Q11.2) WILD-TYPE" 
                   TCGA-BR-7723                    TCGA-BR-7851 
"DEL PEAK 13(5Q11.2) WILD-TYPE" "DEL PEAK 13(5Q11.2) WILD-TYPE" 
                   TCGA-BR-7901                    TCGA-BR-7957 
  "DEL PEAK 13(5Q11.2) MUTATED" "DEL PEAK 13(5Q11.2) WILD-TYPE" 
                   TCGA-BR-7958                    TCGA-BR-7959 
"DEL PEAK 13(5Q11.2) WILD-TYPE" "DEL PEAK 13(5Q11.2) WILD-TYPE" 
                   TCGA-BR-8059                    TCGA-BR-8060 
"DEL PEAK 13(5Q11.2) WILD-TYPE" "DEL PEAK 13(5Q11.2) WILD-TYPE" 
                   TCGA-BR-8077                    TCGA-BR-8078 
"DEL PEAK 13(5Q11.2) WILD-TYPE" "DEL PEAK 13(5Q11.2) WILD-TYPE" 
                   TCGA-BR-8080                    TCGA-BR-8081 
"DEL PEAK 13(5Q11.2) WILD-TYPE" "DEL PEAK 13(5Q11.2) WILD-TYPE" 
                   TCGA-BR-8284                    TCGA-BR-8285 
"DEL PEAK 13(5Q11.2) WILD-TYPE" "DEL PEAK 13(5Q11.2) WILD-TYPE" 
                   TCGA-BR-8286                    TCGA-BR-8289 
"DEL PEAK 13(5Q11.2) WILD-TYPE" "DEL PEAK 13(5Q11.2) WILD-TYPE" 
                   TCGA-BR-8291                    TCGA-BR-8295 
"DEL PEAK 13(5Q11.2) WILD-TYPE" "DEL PEAK 13(5Q11.2) WILD-TYPE" 
                   TCGA-BR-8296                    TCGA-BR-8297 
"DEL PEAK 13(5Q11.2) WILD-TYPE" "DEL PEAK 13(5Q11.2) WILD-TYPE" 
                   TCGA-CD-5798                    TCGA-CD-5799 
"DEL PEAK 13(5Q11.2) WILD-TYPE" "DEL PEAK 13(5Q11.2) WILD-TYPE" 
                   TCGA-CD-5800                    TCGA-CD-5801 
  "DEL PEAK 13(5Q11.2) MUTATED"   "DEL PEAK 13(5Q11.2) MUTATED" 
                   TCGA-CD-5802                    TCGA-CD-5803 
  "DEL PEAK 13(5Q11.2) MUTATED" "DEL PEAK 13(5Q11.2) WILD-TYPE" 
                   TCGA-CG-4300                    TCGA-CG-4301 
"DEL PEAK 13(5Q11.2) WILD-TYPE" "DEL PEAK 13(5Q11.2) WILD-TYPE" 
                   TCGA-CG-4304                    TCGA-CG-4305 
  "DEL PEAK 13(5Q11.2) MUTATED" "DEL PEAK 13(5Q11.2) WILD-TYPE" 
                   TCGA-CG-4306                    TCGA-CG-4436 
"DEL PEAK 13(5Q11.2) WILD-TYPE"   "DEL PEAK 13(5Q11.2) MUTATED" 
                   TCGA-CG-4437                    TCGA-CG-4438 
"DEL PEAK 13(5Q11.2) WILD-TYPE" "DEL PEAK 13(5Q11.2) WILD-TYPE" 
                   TCGA-CG-4440                    TCGA-CG-4441 
  "DEL PEAK 13(5Q11.2) MUTATED"   "DEL PEAK 13(5Q11.2) MUTATED" 
                   TCGA-CG-4443                    TCGA-CG-4444 
"DEL PEAK 13(5Q11.2) WILD-TYPE"   "DEL PEAK 13(5Q11.2) MUTATED" 
                   TCGA-CG-4449                    TCGA-CG-4455 
  "DEL PEAK 13(5Q11.2) MUTATED"   "DEL PEAK 13(5Q11.2) MUTATED" 
                   TCGA-CG-4460                    TCGA-CG-4462 
"DEL PEAK 13(5Q11.2) WILD-TYPE" "DEL PEAK 13(5Q11.2) WILD-TYPE" 
                   TCGA-CG-4465                    TCGA-CG-4466 
"DEL PEAK 13(5Q11.2) WILD-TYPE"   "DEL PEAK 13(5Q11.2) MUTATED" 
                   TCGA-CG-4469                    TCGA-CG-4472 
"DEL PEAK 13(5Q11.2) WILD-TYPE" "DEL PEAK 13(5Q11.2) WILD-TYPE" 
                   TCGA-CG-4474                    TCGA-CG-4477 
"DEL PEAK 13(5Q11.2) WILD-TYPE"   "DEL PEAK 13(5Q11.2) MUTATED" 
                   TCGA-CG-5716                    TCGA-CG-5717 
"DEL PEAK 13(5Q11.2) WILD-TYPE" "DEL PEAK 13(5Q11.2) WILD-TYPE" 
                   TCGA-CG-5718                    TCGA-CG-5719 
  "DEL PEAK 13(5Q11.2) MUTATED" "DEL PEAK 13(5Q11.2) WILD-TYPE" 
                   TCGA-CG-5720                    TCGA-CG-5721 
"DEL PEAK 13(5Q11.2) WILD-TYPE" "DEL PEAK 13(5Q11.2) WILD-TYPE" 
                   TCGA-CG-5722                    TCGA-CG-5723 
"DEL PEAK 13(5Q11.2) WILD-TYPE" "DEL PEAK 13(5Q11.2) WILD-TYPE" 
                   TCGA-CG-5724                    TCGA-CG-5725 
"DEL PEAK 13(5Q11.2) WILD-TYPE"   "DEL PEAK 13(5Q11.2) MUTATED" 
                   TCGA-CG-5726                    TCGA-CG-5727 
"DEL PEAK 13(5Q11.2) WILD-TYPE" "DEL PEAK 13(5Q11.2) WILD-TYPE" 
                   TCGA-CG-5728                    TCGA-CG-5730 
"DEL PEAK 13(5Q11.2) WILD-TYPE" "DEL PEAK 13(5Q11.2) WILD-TYPE" 
                   TCGA-CG-5732                    TCGA-CG-5733 
  "DEL PEAK 13(5Q11.2) MUTATED" "DEL PEAK 13(5Q11.2) WILD-TYPE" 
                   TCGA-CG-5734                    TCGA-D7-5577 
"DEL PEAK 13(5Q11.2) WILD-TYPE" "DEL PEAK 13(5Q11.2) WILD-TYPE" 
                   TCGA-D7-5578                    TCGA-D7-5579 
"DEL PEAK 13(5Q11.2) WILD-TYPE"   "DEL PEAK 13(5Q11.2) MUTATED" 
                   TCGA-D7-6518                    TCGA-D7-6519 
"DEL PEAK 13(5Q11.2) WILD-TYPE" "DEL PEAK 13(5Q11.2) WILD-TYPE" 
                   TCGA-D7-6520                    TCGA-D7-6521 
  "DEL PEAK 13(5Q11.2) MUTATED" "DEL PEAK 13(5Q11.2) WILD-TYPE" 
                   TCGA-D7-6522                    TCGA-D7-6524 
"DEL PEAK 13(5Q11.2) WILD-TYPE" "DEL PEAK 13(5Q11.2) WILD-TYPE" 
                   TCGA-D7-6525                    TCGA-D7-6526 
  "DEL PEAK 13(5Q11.2) MUTATED"   "DEL PEAK 13(5Q11.2) MUTATED" 
                   TCGA-D7-6527                    TCGA-D7-6528 
  "DEL PEAK 13(5Q11.2) MUTATED"   "DEL PEAK 13(5Q11.2) MUTATED" 
                   TCGA-D7-6815                    TCGA-D7-6817 
  "DEL PEAK 13(5Q11.2) MUTATED"   "DEL PEAK 13(5Q11.2) MUTATED" 
                   TCGA-D7-6818                    TCGA-D7-6820 
"DEL PEAK 13(5Q11.2) WILD-TYPE"   "DEL PEAK 13(5Q11.2) MUTATED" 
                   TCGA-D7-6822                    TCGA-EQ-5647 
  "DEL PEAK 13(5Q11.2) MUTATED"   "DEL PEAK 13(5Q11.2) MUTATED" 
                   TCGA-EQ-8122                    TCGA-F1-6177 
  "DEL PEAK 13(5Q11.2) MUTATED" "DEL PEAK 13(5Q11.2) WILD-TYPE" 
                   TCGA-F1-6874                    TCGA-F1-6875 
"DEL PEAK 13(5Q11.2) WILD-TYPE"   "DEL PEAK 13(5Q11.2) MUTATED" 
                   TCGA-FP-7735                    TCGA-FP-7829 
"DEL PEAK 13(5Q11.2) WILD-TYPE"   "DEL PEAK 13(5Q11.2) MUTATED" 
                   TCGA-FP-7916                    TCGA-FP-7998 
"DEL PEAK 13(5Q11.2) WILD-TYPE" "DEL PEAK 13(5Q11.2) WILD-TYPE" 
                   TCGA-HJ-7597                    TCGA-IN-7806 
"DEL PEAK 13(5Q11.2) WILD-TYPE"   "DEL PEAK 13(5Q11.2) MUTATED" 
                   TCGA-IN-7808                    TCGA-IP-7968 
"DEL PEAK 13(5Q11.2) WILD-TYPE"   "DEL PEAK 13(5Q11.2) MUTATED" 
                   TCGA-B7-5816                    TCGA-B7-5818 
"DEL PEAK 13(5Q11.2) WILD-TYPE" "DEL PEAK 13(5Q11.2) WILD-TYPE" 
                   TCGA-BR-6452                    TCGA-BR-6455 
"DEL PEAK 13(5Q11.2) WILD-TYPE" "DEL PEAK 13(5Q11.2) WILD-TYPE" 
                   TCGA-BR-6457                    TCGA-BR-6458 
"DEL PEAK 13(5Q11.2) WILD-TYPE"   "DEL PEAK 13(5Q11.2) MUTATED" 
                   TCGA-BR-6563                    TCGA-BR-6564 
"DEL PEAK 13(5Q11.2) WILD-TYPE" "DEL PEAK 13(5Q11.2) WILD-TYPE" 
                   TCGA-BR-6565                    TCGA-BR-6566 
  "DEL PEAK 13(5Q11.2) MUTATED" "DEL PEAK 13(5Q11.2) WILD-TYPE" 
                   TCGA-BR-6705                    TCGA-BR-6706 
"DEL PEAK 13(5Q11.2) WILD-TYPE" "DEL PEAK 13(5Q11.2) WILD-TYPE" 
                   TCGA-BR-6707                    TCGA-BR-6709 
"DEL PEAK 13(5Q11.2) WILD-TYPE"   "DEL PEAK 13(5Q11.2) MUTATED" 
                   TCGA-BR-6710                    TCGA-BR-6801 
"DEL PEAK 13(5Q11.2) WILD-TYPE" "DEL PEAK 13(5Q11.2) WILD-TYPE" 
                   TCGA-BR-6802                    TCGA-BR-6803 
"DEL PEAK 13(5Q11.2) WILD-TYPE" "DEL PEAK 13(5Q11.2) WILD-TYPE" 
                   TCGA-BR-6852                    TCGA-BR-7196 
"DEL PEAK 13(5Q11.2) WILD-TYPE" "DEL PEAK 13(5Q11.2) WILD-TYPE" 
                   TCGA-BR-7197                    TCGA-BR-7703 
"DEL PEAK 13(5Q11.2) WILD-TYPE" "DEL PEAK 13(5Q11.2) WILD-TYPE" 
                   TCGA-BR-7704                    TCGA-BR-7707 
"DEL PEAK 13(5Q11.2) WILD-TYPE" "DEL PEAK 13(5Q11.2) WILD-TYPE" 
                   TCGA-BR-7715                    TCGA-BR-7716 
  "DEL PEAK 13(5Q11.2) MUTATED"   "DEL PEAK 13(5Q11.2) MUTATED" 
                   TCGA-BR-7717                    TCGA-BR-7722 
"DEL PEAK 13(5Q11.2) WILD-TYPE" "DEL PEAK 13(5Q11.2) WILD-TYPE" 
                   TCGA-BR-7723                    TCGA-BR-7851 
"DEL PEAK 13(5Q11.2) WILD-TYPE" "DEL PEAK 13(5Q11.2) WILD-TYPE" 
                   TCGA-BR-7901                    TCGA-BR-7957 
  "DEL PEAK 13(5Q11.2) MUTATED" "DEL PEAK 13(5Q11.2) WILD-TYPE" 
                   TCGA-BR-7958                    TCGA-BR-7959 
"DEL PEAK 13(5Q11.2) WILD-TYPE" "DEL PEAK 13(5Q11.2) WILD-TYPE" 
                   TCGA-BR-8059                    TCGA-BR-8060 
"DEL PEAK 13(5Q11.2) WILD-TYPE" "DEL PEAK 13(5Q11.2) WILD-TYPE" 
                   TCGA-BR-8077                    TCGA-BR-8078 
"DEL PEAK 13(5Q11.2) WILD-TYPE" "DEL PEAK 13(5Q11.2) WILD-TYPE" 
                   TCGA-BR-8080                    TCGA-BR-8081 
"DEL PEAK 13(5Q11.2) WILD-TYPE" "DEL PEAK 13(5Q11.2) WILD-TYPE" 
                   TCGA-BR-8284                    TCGA-BR-8285 
"DEL PEAK 13(5Q11.2) WILD-TYPE" "DEL PEAK 13(5Q11.2) WILD-TYPE" 
                   TCGA-BR-8286                    TCGA-BR-8289 
"DEL PEAK 13(5Q11.2) WILD-TYPE" "DEL PEAK 13(5Q11.2) WILD-TYPE" 
                   TCGA-BR-8291                    TCGA-BR-8295 
"DEL PEAK 13(5Q11.2) WILD-TYPE" "DEL PEAK 13(5Q11.2) WILD-TYPE" 
                   TCGA-BR-8296                    TCGA-BR-8297 
"DEL PEAK 13(5Q11.2) WILD-TYPE" "DEL PEAK 13(5Q11.2) WILD-TYPE" 
                   TCGA-CD-5798                    TCGA-CD-5799 
"DEL PEAK 13(5Q11.2) WILD-TYPE" "DEL PEAK 13(5Q11.2) WILD-TYPE" 
                   TCGA-CD-5800                    TCGA-CD-5801 
  "DEL PEAK 13(5Q11.2) MUTATED"   "DEL PEAK 13(5Q11.2) MUTATED" 
                   TCGA-CD-5802                    TCGA-CD-5803 
  "DEL PEAK 13(5Q11.2) MUTATED" "DEL PEAK 13(5Q11.2) WILD-TYPE" 
                   TCGA-CG-4300                    TCGA-CG-4301 
"DEL PEAK 13(5Q11.2) WILD-TYPE" "DEL PEAK 13(5Q11.2) WILD-TYPE" 
                   TCGA-CG-4304                    TCGA-CG-4305 
  "DEL PEAK 13(5Q11.2) MUTATED" "DEL PEAK 13(5Q11.2) WILD-TYPE" 
                   TCGA-CG-4306                    TCGA-CG-4436 
"DEL PEAK 13(5Q11.2) WILD-TYPE"   "DEL PEAK 13(5Q11.2) MUTATED" 
                   TCGA-CG-4437                    TCGA-CG-4438 
"DEL PEAK 13(5Q11.2) WILD-TYPE" "DEL PEAK 13(5Q11.2) WILD-TYPE" 
                   TCGA-CG-4440                    TCGA-CG-4441 
  "DEL PEAK 13(5Q11.2) MUTATED"   "DEL PEAK 13(5Q11.2) MUTATED" 
                   TCGA-CG-4443                    TCGA-CG-4444 
"DEL PEAK 13(5Q11.2) WILD-TYPE"   "DEL PEAK 13(5Q11.2) MUTATED" 
                   TCGA-CG-4449                    TCGA-CG-4455 
  "DEL PEAK 13(5Q11.2) MUTATED"   "DEL PEAK 13(5Q11.2) MUTATED" 
                   TCGA-CG-4460                    TCGA-CG-4462 
"DEL PEAK 13(5Q11.2) WILD-TYPE" "DEL PEAK 13(5Q11.2) WILD-TYPE" 
                   TCGA-CG-4465                    TCGA-CG-4466 
"DEL PEAK 13(5Q11.2) WILD-TYPE"   "DEL PEAK 13(5Q11.2) MUTATED" 
                   TCGA-CG-4469                    TCGA-CG-4472 
"DEL PEAK 13(5Q11.2) WILD-TYPE" "DEL PEAK 13(5Q11.2) WILD-TYPE" 
                   TCGA-CG-4474                    TCGA-CG-4477 
"DEL PEAK 13(5Q11.2) WILD-TYPE"   "DEL PEAK 13(5Q11.2) MUTATED" 
                   TCGA-CG-5716                    TCGA-CG-5717 
"DEL PEAK 13(5Q11.2) WILD-TYPE" "DEL PEAK 13(5Q11.2) WILD-TYPE" 
                   TCGA-CG-5718                    TCGA-CG-5719 
  "DEL PEAK 13(5Q11.2) MUTATED" "DEL PEAK 13(5Q11.2) WILD-TYPE" 
                   TCGA-CG-5720                    TCGA-CG-5721 
"DEL PEAK 13(5Q11.2) WILD-TYPE" "DEL PEAK 13(5Q11.2) WILD-TYPE" 
                   TCGA-CG-5722                    TCGA-CG-5723 
"DEL PEAK 13(5Q11.2) WILD-TYPE" "DEL PEAK 13(5Q11.2) WILD-TYPE" 
                   TCGA-CG-5724                    TCGA-CG-5725 
"DEL PEAK 13(5Q11.2) WILD-TYPE"   "DEL PEAK 13(5Q11.2) MUTATED" 
                   TCGA-CG-5726                    TCGA-CG-5727 
"DEL PEAK 13(5Q11.2) WILD-TYPE" "DEL PEAK 13(5Q11.2) WILD-TYPE" 
                   TCGA-CG-5728                    TCGA-CG-5730 
"DEL PEAK 13(5Q11.2) WILD-TYPE" "DEL PEAK 13(5Q11.2) WILD-TYPE" 
                   TCGA-CG-5732                    TCGA-CG-5733 
  "DEL PEAK 13(5Q11.2) MUTATED" "DEL PEAK 13(5Q11.2) WILD-TYPE" 
                   TCGA-CG-5734                    TCGA-D7-5577 
"DEL PEAK 13(5Q11.2) WILD-TYPE" "DEL PEAK 13(5Q11.2) WILD-TYPE" 
                   TCGA-D7-5578                    TCGA-D7-5579 
"DEL PEAK 13(5Q11.2) WILD-TYPE"   "DEL PEAK 13(5Q11.2) MUTATED" 
                   TCGA-D7-6518                    TCGA-D7-6519 
"DEL PEAK 13(5Q11.2) WILD-TYPE" "DEL PEAK 13(5Q11.2) WILD-TYPE" 
                   TCGA-D7-6520                    TCGA-D7-6521 
  "DEL PEAK 13(5Q11.2) MUTATED" "DEL PEAK 13(5Q11.2) WILD-TYPE" 
                   TCGA-D7-6522                    TCGA-D7-6524 
"DEL PEAK 13(5Q11.2) WILD-TYPE" "DEL PEAK 13(5Q11.2) WILD-TYPE" 
                   TCGA-D7-6525                    TCGA-D7-6526 
  "DEL PEAK 13(5Q11.2) MUTATED"   "DEL PEAK 13(5Q11.2) MUTATED" 
                   TCGA-D7-6527                    TCGA-D7-6528 
  "DEL PEAK 13(5Q11.2) MUTATED"   "DEL PEAK 13(5Q11.2) MUTATED" 
                   TCGA-D7-6815                    TCGA-D7-6817 
  "DEL PEAK 13(5Q11.2) MUTATED"   "DEL PEAK 13(5Q11.2) MUTATED" 
                   TCGA-D7-6818                    TCGA-D7-6820 
"DEL PEAK 13(5Q11.2) WILD-TYPE"   "DEL PEAK 13(5Q11.2) MUTATED" 
                   TCGA-D7-6822                    TCGA-EQ-5647 
  "DEL PEAK 13(5Q11.2) MUTATED"   "DEL PEAK 13(5Q11.2) MUTATED" 
                   TCGA-EQ-8122                    TCGA-F1-6177 
  "DEL PEAK 13(5Q11.2) MUTATED" "DEL PEAK 13(5Q11.2) WILD-TYPE" 
                   TCGA-F1-6874                    TCGA-F1-6875 
"DEL PEAK 13(5Q11.2) WILD-TYPE"   "DEL PEAK 13(5Q11.2) MUTATED" 
                   TCGA-FP-7735                    TCGA-FP-7829 
"DEL PEAK 13(5Q11.2) WILD-TYPE"   "DEL PEAK 13(5Q11.2) MUTATED" 
                   TCGA-FP-7916                    TCGA-FP-7998 
"DEL PEAK 13(5Q11.2) WILD-TYPE" "DEL PEAK 13(5Q11.2) WILD-TYPE" 
                   TCGA-HJ-7597                    TCGA-IN-7806 
"DEL PEAK 13(5Q11.2) WILD-TYPE"   "DEL PEAK 13(5Q11.2) MUTATED" 
                   TCGA-IN-7808                    TCGA-IP-7968 
"DEL PEAK 13(5Q11.2) WILD-TYPE"   "DEL PEAK 13(5Q11.2) MUTATED" 
[1] "hr=" "1.7"
D39V2, continuous
D39V3, binary
[1] "tbl2"
                               cls
clus                            [,1] [,2]
  DEL PEAK 13(5Q11.2) MUTATED     17   28
  DEL PEAK 13(5Q11.2) WILD-TYPE   48   68
        clus
vv       DEL PEAK 13(5Q11.2) MUTATED DEL PEAK 13(5Q11.2) WILD-TYPE
  FEMALE                          17                            48
  MALE                            28                            68
D39V4, multiclass
D39V5, multiclass
    clus
vv   DEL PEAK 13(5Q11.2) MUTATED DEL PEAK 13(5Q11.2) WILD-TYPE
  T1                           1                             5
  T2                          21                            32
  T3                          18                            41
  T4                           2                            31
D39V6, multiclass
    clus
vv   DEL PEAK 13(5Q11.2) MUTATED DEL PEAK 13(5Q11.2) WILD-TYPE
  N0                          12                            38
  N1                          16                            41
  N2                           9                            15
  N3                           5                            14
D39V7, multiclass
    clus
vv   DEL PEAK 13(5Q11.2) MUTATED DEL PEAK 13(5Q11.2) WILD-TYPE
  M0                          41                            91
  M1                           2                            16
  MX                           2                             9
D39V8, multiclass
     clus
vv    DEL PEAK 13(5Q11.2) MUTATED DEL PEAK 13(5Q11.2) WILD-TYPE
  I                             8                            17
  II                           13                            30
  III                          15                            33
  IV                            5                            24
D39V9, binary
[1] "tbl2"
                               cls
clus                            [,1] [,2]
  DEL PEAK 13(5Q11.2) MUTATED     43    2
  DEL PEAK 13(5Q11.2) WILD-TYPE  113    3
     clus
vv    DEL PEAK 13(5Q11.2) MUTATED DEL PEAK 13(5Q11.2) WILD-TYPE
  NO                            2                             3
  YES                          43                           113

Clustering(40) Variable = Del Peak 14(6p25.3) mutation analysis
D40V1, survival
                   TCGA-B7-5816                    TCGA-B7-5818 
  "DEL PEAK 14(6P25.3) MUTATED" "DEL PEAK 14(6P25.3) WILD-TYPE" 
                   TCGA-BR-6452                    TCGA-BR-6455 
"DEL PEAK 14(6P25.3) WILD-TYPE" "DEL PEAK 14(6P25.3) WILD-TYPE" 
                   TCGA-BR-6457                    TCGA-BR-6458 
"DEL PEAK 14(6P25.3) WILD-TYPE"   "DEL PEAK 14(6P25.3) MUTATED" 
                   TCGA-BR-6563                    TCGA-BR-6564 
"DEL PEAK 14(6P25.3) WILD-TYPE" "DEL PEAK 14(6P25.3) WILD-TYPE" 
                   TCGA-BR-6565                    TCGA-BR-6566 
"DEL PEAK 14(6P25.3) WILD-TYPE" "DEL PEAK 14(6P25.3) WILD-TYPE" 
                   TCGA-BR-6705                    TCGA-BR-6706 
"DEL PEAK 14(6P25.3) WILD-TYPE" "DEL PEAK 14(6P25.3) WILD-TYPE" 
                   TCGA-BR-6707                    TCGA-BR-6709 
"DEL PEAK 14(6P25.3) WILD-TYPE"   "DEL PEAK 14(6P25.3) MUTATED" 
                   TCGA-BR-6710                    TCGA-BR-6801 
"DEL PEAK 14(6P25.3) WILD-TYPE" "DEL PEAK 14(6P25.3) WILD-TYPE" 
                   TCGA-BR-6802                    TCGA-BR-6803 
"DEL PEAK 14(6P25.3) WILD-TYPE"   "DEL PEAK 14(6P25.3) MUTATED" 
                   TCGA-BR-6852                    TCGA-BR-7196 
"DEL PEAK 14(6P25.3) WILD-TYPE" "DEL PEAK 14(6P25.3) WILD-TYPE" 
                   TCGA-BR-7197                    TCGA-BR-7703 
"DEL PEAK 14(6P25.3) WILD-TYPE" "DEL PEAK 14(6P25.3) WILD-TYPE" 
                   TCGA-BR-7704                    TCGA-BR-7707 
"DEL PEAK 14(6P25.3) WILD-TYPE" "DEL PEAK 14(6P25.3) WILD-TYPE" 
                   TCGA-BR-7715                    TCGA-BR-7716 
"DEL PEAK 14(6P25.3) WILD-TYPE"   "DEL PEAK 14(6P25.3) MUTATED" 
                   TCGA-BR-7717                    TCGA-BR-7722 
"DEL PEAK 14(6P25.3) WILD-TYPE" "DEL PEAK 14(6P25.3) WILD-TYPE" 
                   TCGA-BR-7723                    TCGA-BR-7851 
"DEL PEAK 14(6P25.3) WILD-TYPE" "DEL PEAK 14(6P25.3) WILD-TYPE" 
                   TCGA-BR-7901                    TCGA-BR-7957 
  "DEL PEAK 14(6P25.3) MUTATED" "DEL PEAK 14(6P25.3) WILD-TYPE" 
                   TCGA-BR-7958                    TCGA-BR-7959 
"DEL PEAK 14(6P25.3) WILD-TYPE" "DEL PEAK 14(6P25.3) WILD-TYPE" 
                   TCGA-BR-8059                    TCGA-BR-8060 
"DEL PEAK 14(6P25.3) WILD-TYPE" "DEL PEAK 14(6P25.3) WILD-TYPE" 
                   TCGA-BR-8077                    TCGA-BR-8078 
"DEL PEAK 14(6P25.3) WILD-TYPE" "DEL PEAK 14(6P25.3) WILD-TYPE" 
                   TCGA-BR-8080                    TCGA-BR-8081 
"DEL PEAK 14(6P25.3) WILD-TYPE" "DEL PEAK 14(6P25.3) WILD-TYPE" 
                   TCGA-BR-8284                    TCGA-BR-8285 
"DEL PEAK 14(6P25.3) WILD-TYPE" "DEL PEAK 14(6P25.3) WILD-TYPE" 
                   TCGA-BR-8286                    TCGA-BR-8289 
"DEL PEAK 14(6P25.3) WILD-TYPE" "DEL PEAK 14(6P25.3) WILD-TYPE" 
                   TCGA-BR-8291                    TCGA-BR-8295 
"DEL PEAK 14(6P25.3) WILD-TYPE" "DEL PEAK 14(6P25.3) WILD-TYPE" 
                   TCGA-BR-8296                    TCGA-BR-8297 
"DEL PEAK 14(6P25.3) WILD-TYPE" "DEL PEAK 14(6P25.3) WILD-TYPE" 
                   TCGA-CD-5798                    TCGA-CD-5799 
"DEL PEAK 14(6P25.3) WILD-TYPE" "DEL PEAK 14(6P25.3) WILD-TYPE" 
                   TCGA-CD-5800                    TCGA-CD-5801 
  "DEL PEAK 14(6P25.3) MUTATED" "DEL PEAK 14(6P25.3) WILD-TYPE" 
                   TCGA-CD-5802                    TCGA-CD-5803 
  "DEL PEAK 14(6P25.3) MUTATED" "DEL PEAK 14(6P25.3) WILD-TYPE" 
                   TCGA-CG-4300                    TCGA-CG-4301 
"DEL PEAK 14(6P25.3) WILD-TYPE" "DEL PEAK 14(6P25.3) WILD-TYPE" 
                   TCGA-CG-4304                    TCGA-CG-4305 
"DEL PEAK 14(6P25.3) WILD-TYPE" "DEL PEAK 14(6P25.3) WILD-TYPE" 
                   TCGA-CG-4306                    TCGA-CG-4436 
"DEL PEAK 14(6P25.3) WILD-TYPE" "DEL PEAK 14(6P25.3) WILD-TYPE" 
                   TCGA-CG-4437                    TCGA-CG-4438 
  "DEL PEAK 14(6P25.3) MUTATED" "DEL PEAK 14(6P25.3) WILD-TYPE" 
                   TCGA-CG-4440                    TCGA-CG-4441 
"DEL PEAK 14(6P25.3) WILD-TYPE" "DEL PEAK 14(6P25.3) WILD-TYPE" 
                   TCGA-CG-4443                    TCGA-CG-4444 
"DEL PEAK 14(6P25.3) WILD-TYPE" "DEL PEAK 14(6P25.3) WILD-TYPE" 
                   TCGA-CG-4449                    TCGA-CG-4455 
"DEL PEAK 14(6P25.3) WILD-TYPE" "DEL PEAK 14(6P25.3) WILD-TYPE" 
                   TCGA-CG-4460                    TCGA-CG-4462 
"DEL PEAK 14(6P25.3) WILD-TYPE" "DEL PEAK 14(6P25.3) WILD-TYPE" 
                   TCGA-CG-4465                    TCGA-CG-4466 
"DEL PEAK 14(6P25.3) WILD-TYPE"   "DEL PEAK 14(6P25.3) MUTATED" 
                   TCGA-CG-4469                    TCGA-CG-4472 
"DEL PEAK 14(6P25.3) WILD-TYPE" "DEL PEAK 14(6P25.3) WILD-TYPE" 
                   TCGA-CG-4474                    TCGA-CG-4477 
"DEL PEAK 14(6P25.3) WILD-TYPE"   "DEL PEAK 14(6P25.3) MUTATED" 
                   TCGA-CG-5716                    TCGA-CG-5717 
"DEL PEAK 14(6P25.3) WILD-TYPE" "DEL PEAK 14(6P25.3) WILD-TYPE" 
                   TCGA-CG-5718                    TCGA-CG-5719 
"DEL PEAK 14(6P25.3) WILD-TYPE"   "DEL PEAK 14(6P25.3) MUTATED" 
                   TCGA-CG-5720                    TCGA-CG-5721 
"DEL PEAK 14(6P25.3) WILD-TYPE" "DEL PEAK 14(6P25.3) WILD-TYPE" 
                   TCGA-CG-5722                    TCGA-CG-5723 
"DEL PEAK 14(6P25.3) WILD-TYPE" "DEL PEAK 14(6P25.3) WILD-TYPE" 
                   TCGA-CG-5724                    TCGA-CG-5725 
  "DEL PEAK 14(6P25.3) MUTATED" "DEL PEAK 14(6P25.3) WILD-TYPE" 
                   TCGA-CG-5726                    TCGA-CG-5727 
"DEL PEAK 14(6P25.3) WILD-TYPE"   "DEL PEAK 14(6P25.3) MUTATED" 
                   TCGA-CG-5728                    TCGA-CG-5730 
  "DEL PEAK 14(6P25.3) MUTATED" "DEL PEAK 14(6P25.3) WILD-TYPE" 
                   TCGA-CG-5732                    TCGA-CG-5733 
  "DEL PEAK 14(6P25.3) MUTATED" "DEL PEAK 14(6P25.3) WILD-TYPE" 
                   TCGA-CG-5734                    TCGA-D7-5577 
"DEL PEAK 14(6P25.3) WILD-TYPE" "DEL PEAK 14(6P25.3) WILD-TYPE" 
                   TCGA-D7-5578                    TCGA-D7-5579 
  "DEL PEAK 14(6P25.3) MUTATED" "DEL PEAK 14(6P25.3) WILD-TYPE" 
                   TCGA-D7-6518                    TCGA-D7-6519 
  "DEL PEAK 14(6P25.3) MUTATED"   "DEL PEAK 14(6P25.3) MUTATED" 
                   TCGA-D7-6520                    TCGA-D7-6521 
  "DEL PEAK 14(6P25.3) MUTATED"   "DEL PEAK 14(6P25.3) MUTATED" 
                   TCGA-D7-6522                    TCGA-D7-6524 
"DEL PEAK 14(6P25.3) WILD-TYPE" "DEL PEAK 14(6P25.3) WILD-TYPE" 
                   TCGA-D7-6525                    TCGA-D7-6526 
  "DEL PEAK 14(6P25.3) MUTATED" "DEL PEAK 14(6P25.3) WILD-TYPE" 
                   TCGA-D7-6527                    TCGA-D7-6528 
"DEL PEAK 14(6P25.3) WILD-TYPE"   "DEL PEAK 14(6P25.3) MUTATED" 
                   TCGA-D7-6815                    TCGA-D7-6817 
  "DEL PEAK 14(6P25.3) MUTATED" "DEL PEAK 14(6P25.3) WILD-TYPE" 
                   TCGA-D7-6818                    TCGA-D7-6820 
"DEL PEAK 14(6P25.3) WILD-TYPE" "DEL PEAK 14(6P25.3) WILD-TYPE" 
                   TCGA-D7-6822                    TCGA-EQ-5647 
  "DEL PEAK 14(6P25.3) MUTATED" "DEL PEAK 14(6P25.3) WILD-TYPE" 
                   TCGA-EQ-8122                    TCGA-F1-6177 
"DEL PEAK 14(6P25.3) WILD-TYPE" "DEL PEAK 14(6P25.3) WILD-TYPE" 
                   TCGA-F1-6874                    TCGA-F1-6875 
"DEL PEAK 14(6P25.3) WILD-TYPE" "DEL PEAK 14(6P25.3) WILD-TYPE" 
                   TCGA-FP-7735                    TCGA-FP-7829 
"DEL PEAK 14(6P25.3) WILD-TYPE" "DEL PEAK 14(6P25.3) WILD-TYPE" 
                   TCGA-FP-7916                    TCGA-FP-7998 
"DEL PEAK 14(6P25.3) WILD-TYPE" "DEL PEAK 14(6P25.3) WILD-TYPE" 
                   TCGA-HJ-7597                    TCGA-IN-7806 
  "DEL PEAK 14(6P25.3) MUTATED" "DEL PEAK 14(6P25.3) WILD-TYPE" 
                   TCGA-IN-7808                    TCGA-IP-7968 
"DEL PEAK 14(6P25.3) WILD-TYPE" "DEL PEAK 14(6P25.3) WILD-TYPE" 
                   TCGA-B7-5816                    TCGA-B7-5818 
  "DEL PEAK 14(6P25.3) MUTATED" "DEL PEAK 14(6P25.3) WILD-TYPE" 
                   TCGA-BR-6452                    TCGA-BR-6455 
"DEL PEAK 14(6P25.3) WILD-TYPE" "DEL PEAK 14(6P25.3) WILD-TYPE" 
                   TCGA-BR-6457                    TCGA-BR-6458 
"DEL PEAK 14(6P25.3) WILD-TYPE"   "DEL PEAK 14(6P25.3) MUTATED" 
                   TCGA-BR-6563                    TCGA-BR-6564 
"DEL PEAK 14(6P25.3) WILD-TYPE" "DEL PEAK 14(6P25.3) WILD-TYPE" 
                   TCGA-BR-6565                    TCGA-BR-6566 
"DEL PEAK 14(6P25.3) WILD-TYPE" "DEL PEAK 14(6P25.3) WILD-TYPE" 
                   TCGA-BR-6705                    TCGA-BR-6706 
"DEL PEAK 14(6P25.3) WILD-TYPE" "DEL PEAK 14(6P25.3) WILD-TYPE" 
                   TCGA-BR-6707                    TCGA-BR-6709 
"DEL PEAK 14(6P25.3) WILD-TYPE"   "DEL PEAK 14(6P25.3) MUTATED" 
                   TCGA-BR-6710                    TCGA-BR-6801 
"DEL PEAK 14(6P25.3) WILD-TYPE" "DEL PEAK 14(6P25.3) WILD-TYPE" 
                   TCGA-BR-6802                    TCGA-BR-6803 
"DEL PEAK 14(6P25.3) WILD-TYPE"   "DEL PEAK 14(6P25.3) MUTATED" 
                   TCGA-BR-6852                    TCGA-BR-7196 
"DEL PEAK 14(6P25.3) WILD-TYPE" "DEL PEAK 14(6P25.3) WILD-TYPE" 
                   TCGA-BR-7197                    TCGA-BR-7703 
"DEL PEAK 14(6P25.3) WILD-TYPE" "DEL PEAK 14(6P25.3) WILD-TYPE" 
                   TCGA-BR-7704                    TCGA-BR-7707 
"DEL PEAK 14(6P25.3) WILD-TYPE" "DEL PEAK 14(6P25.3) WILD-TYPE" 
                   TCGA-BR-7715                    TCGA-BR-7716 
"DEL PEAK 14(6P25.3) WILD-TYPE"   "DEL PEAK 14(6P25.3) MUTATED" 
                   TCGA-BR-7717                    TCGA-BR-7722 
"DEL PEAK 14(6P25.3) WILD-TYPE" "DEL PEAK 14(6P25.3) WILD-TYPE" 
                   TCGA-BR-7723                    TCGA-BR-7851 
"DEL PEAK 14(6P25.3) WILD-TYPE" "DEL PEAK 14(6P25.3) WILD-TYPE" 
                   TCGA-BR-7901                    TCGA-BR-7957 
  "DEL PEAK 14(6P25.3) MUTATED" "DEL PEAK 14(6P25.3) WILD-TYPE" 
                   TCGA-BR-7958                    TCGA-BR-7959 
"DEL PEAK 14(6P25.3) WILD-TYPE" "DEL PEAK 14(6P25.3) WILD-TYPE" 
                   TCGA-BR-8059                    TCGA-BR-8060 
"DEL PEAK 14(6P25.3) WILD-TYPE" "DEL PEAK 14(6P25.3) WILD-TYPE" 
                   TCGA-BR-8077                    TCGA-BR-8078 
"DEL PEAK 14(6P25.3) WILD-TYPE" "DEL PEAK 14(6P25.3) WILD-TYPE" 
                   TCGA-BR-8080                    TCGA-BR-8081 
"DEL PEAK 14(6P25.3) WILD-TYPE" "DEL PEAK 14(6P25.3) WILD-TYPE" 
                   TCGA-BR-8284                    TCGA-BR-8285 
"DEL PEAK 14(6P25.3) WILD-TYPE" "DEL PEAK 14(6P25.3) WILD-TYPE" 
                   TCGA-BR-8286                    TCGA-BR-8289 
"DEL PEAK 14(6P25.3) WILD-TYPE" "DEL PEAK 14(6P25.3) WILD-TYPE" 
                   TCGA-BR-8291                    TCGA-BR-8295 
"DEL PEAK 14(6P25.3) WILD-TYPE" "DEL PEAK 14(6P25.3) WILD-TYPE" 
                   TCGA-BR-8296                    TCGA-BR-8297 
"DEL PEAK 14(6P25.3) WILD-TYPE" "DEL PEAK 14(6P25.3) WILD-TYPE" 
                   TCGA-CD-5798                    TCGA-CD-5799 
"DEL PEAK 14(6P25.3) WILD-TYPE" "DEL PEAK 14(6P25.3) WILD-TYPE" 
                   TCGA-CD-5800                    TCGA-CD-5801 
  "DEL PEAK 14(6P25.3) MUTATED" "DEL PEAK 14(6P25.3) WILD-TYPE" 
                   TCGA-CD-5802                    TCGA-CD-5803 
  "DEL PEAK 14(6P25.3) MUTATED" "DEL PEAK 14(6P25.3) WILD-TYPE" 
                   TCGA-CG-4300                    TCGA-CG-4301 
"DEL PEAK 14(6P25.3) WILD-TYPE" "DEL PEAK 14(6P25.3) WILD-TYPE" 
                   TCGA-CG-4304                    TCGA-CG-4305 
"DEL PEAK 14(6P25.3) WILD-TYPE" "DEL PEAK 14(6P25.3) WILD-TYPE" 
                   TCGA-CG-4306                    TCGA-CG-4436 
"DEL PEAK 14(6P25.3) WILD-TYPE" "DEL PEAK 14(6P25.3) WILD-TYPE" 
                   TCGA-CG-4437                    TCGA-CG-4438 
  "DEL PEAK 14(6P25.3) MUTATED" "DEL PEAK 14(6P25.3) WILD-TYPE" 
                   TCGA-CG-4440                    TCGA-CG-4441 
"DEL PEAK 14(6P25.3) WILD-TYPE" "DEL PEAK 14(6P25.3) WILD-TYPE" 
                   TCGA-CG-4443                    TCGA-CG-4444 
"DEL PEAK 14(6P25.3) WILD-TYPE" "DEL PEAK 14(6P25.3) WILD-TYPE" 
                   TCGA-CG-4449                    TCGA-CG-4455 
"DEL PEAK 14(6P25.3) WILD-TYPE" "DEL PEAK 14(6P25.3) WILD-TYPE" 
                   TCGA-CG-4460                    TCGA-CG-4462 
"DEL PEAK 14(6P25.3) WILD-TYPE" "DEL PEAK 14(6P25.3) WILD-TYPE" 
                   TCGA-CG-4465                    TCGA-CG-4466 
"DEL PEAK 14(6P25.3) WILD-TYPE"   "DEL PEAK 14(6P25.3) MUTATED" 
                   TCGA-CG-4469                    TCGA-CG-4472 
"DEL PEAK 14(6P25.3) WILD-TYPE" "DEL PEAK 14(6P25.3) WILD-TYPE" 
                   TCGA-CG-4474                    TCGA-CG-4477 
"DEL PEAK 14(6P25.3) WILD-TYPE"   "DEL PEAK 14(6P25.3) MUTATED" 
                   TCGA-CG-5716                    TCGA-CG-5717 
"DEL PEAK 14(6P25.3) WILD-TYPE" "DEL PEAK 14(6P25.3) WILD-TYPE" 
                   TCGA-CG-5718                    TCGA-CG-5719 
"DEL PEAK 14(6P25.3) WILD-TYPE"   "DEL PEAK 14(6P25.3) MUTATED" 
                   TCGA-CG-5720                    TCGA-CG-5721 
"DEL PEAK 14(6P25.3) WILD-TYPE" "DEL PEAK 14(6P25.3) WILD-TYPE" 
                   TCGA-CG-5722                    TCGA-CG-5723 
"DEL PEAK 14(6P25.3) WILD-TYPE" "DEL PEAK 14(6P25.3) WILD-TYPE" 
                   TCGA-CG-5724                    TCGA-CG-5725 
  "DEL PEAK 14(6P25.3) MUTATED" "DEL PEAK 14(6P25.3) WILD-TYPE" 
                   TCGA-CG-5726                    TCGA-CG-5727 
"DEL PEAK 14(6P25.3) WILD-TYPE"   "DEL PEAK 14(6P25.3) MUTATED" 
                   TCGA-CG-5728                    TCGA-CG-5730 
  "DEL PEAK 14(6P25.3) MUTATED" "DEL PEAK 14(6P25.3) WILD-TYPE" 
                   TCGA-CG-5732                    TCGA-CG-5733 
  "DEL PEAK 14(6P25.3) MUTATED" "DEL PEAK 14(6P25.3) WILD-TYPE" 
                   TCGA-CG-5734                    TCGA-D7-5577 
"DEL PEAK 14(6P25.3) WILD-TYPE" "DEL PEAK 14(6P25.3) WILD-TYPE" 
                   TCGA-D7-5578                    TCGA-D7-5579 
  "DEL PEAK 14(6P25.3) MUTATED" "DEL PEAK 14(6P25.3) WILD-TYPE" 
                   TCGA-D7-6518                    TCGA-D7-6519 
  "DEL PEAK 14(6P25.3) MUTATED"   "DEL PEAK 14(6P25.3) MUTATED" 
                   TCGA-D7-6520                    TCGA-D7-6521 
  "DEL PEAK 14(6P25.3) MUTATED"   "DEL PEAK 14(6P25.3) MUTATED" 
                   TCGA-D7-6522                    TCGA-D7-6524 
"DEL PEAK 14(6P25.3) WILD-TYPE" "DEL PEAK 14(6P25.3) WILD-TYPE" 
                   TCGA-D7-6525                    TCGA-D7-6526 
  "DEL PEAK 14(6P25.3) MUTATED" "DEL PEAK 14(6P25.3) WILD-TYPE" 
                   TCGA-D7-6527                    TCGA-D7-6528 
"DEL PEAK 14(6P25.3) WILD-TYPE"   "DEL PEAK 14(6P25.3) MUTATED" 
                   TCGA-D7-6815                    TCGA-D7-6817 
  "DEL PEAK 14(6P25.3) MUTATED" "DEL PEAK 14(6P25.3) WILD-TYPE" 
                   TCGA-D7-6818                    TCGA-D7-6820 
"DEL PEAK 14(6P25.3) WILD-TYPE" "DEL PEAK 14(6P25.3) WILD-TYPE" 
                   TCGA-D7-6822                    TCGA-EQ-5647 
  "DEL PEAK 14(6P25.3) MUTATED" "DEL PEAK 14(6P25.3) WILD-TYPE" 
                   TCGA-EQ-8122                    TCGA-F1-6177 
"DEL PEAK 14(6P25.3) WILD-TYPE" "DEL PEAK 14(6P25.3) WILD-TYPE" 
                   TCGA-F1-6874                    TCGA-F1-6875 
"DEL PEAK 14(6P25.3) WILD-TYPE" "DEL PEAK 14(6P25.3) WILD-TYPE" 
                   TCGA-FP-7735                    TCGA-FP-7829 
"DEL PEAK 14(6P25.3) WILD-TYPE" "DEL PEAK 14(6P25.3) WILD-TYPE" 
                   TCGA-FP-7916                    TCGA-FP-7998 
"DEL PEAK 14(6P25.3) WILD-TYPE" "DEL PEAK 14(6P25.3) WILD-TYPE" 
                   TCGA-HJ-7597                    TCGA-IN-7806 
  "DEL PEAK 14(6P25.3) MUTATED" "DEL PEAK 14(6P25.3) WILD-TYPE" 
                   TCGA-IN-7808                    TCGA-IP-7968 
"DEL PEAK 14(6P25.3) WILD-TYPE" "DEL PEAK 14(6P25.3) WILD-TYPE" 
                   TCGA-B7-5816                    TCGA-B7-5818 
  "DEL PEAK 14(6P25.3) MUTATED" "DEL PEAK 14(6P25.3) WILD-TYPE" 
                   TCGA-BR-6452                    TCGA-BR-6455 
"DEL PEAK 14(6P25.3) WILD-TYPE" "DEL PEAK 14(6P25.3) WILD-TYPE" 
                   TCGA-BR-6457                    TCGA-BR-6458 
"DEL PEAK 14(6P25.3) WILD-TYPE"   "DEL PEAK 14(6P25.3) MUTATED" 
                   TCGA-BR-6563                    TCGA-BR-6564 
"DEL PEAK 14(6P25.3) WILD-TYPE" "DEL PEAK 14(6P25.3) WILD-TYPE" 
                   TCGA-BR-6565                    TCGA-BR-6566 
"DEL PEAK 14(6P25.3) WILD-TYPE" "DEL PEAK 14(6P25.3) WILD-TYPE" 
                   TCGA-BR-6705                    TCGA-BR-6706 
"DEL PEAK 14(6P25.3) WILD-TYPE" "DEL PEAK 14(6P25.3) WILD-TYPE" 
                   TCGA-BR-6707                    TCGA-BR-6709 
"DEL PEAK 14(6P25.3) WILD-TYPE"   "DEL PEAK 14(6P25.3) MUTATED" 
                   TCGA-BR-6710                    TCGA-BR-6801 
"DEL PEAK 14(6P25.3) WILD-TYPE" "DEL PEAK 14(6P25.3) WILD-TYPE" 
                   TCGA-BR-6802                    TCGA-BR-6803 
"DEL PEAK 14(6P25.3) WILD-TYPE"   "DEL PEAK 14(6P25.3) MUTATED" 
                   TCGA-BR-6852                    TCGA-BR-7196 
"DEL PEAK 14(6P25.3) WILD-TYPE" "DEL PEAK 14(6P25.3) WILD-TYPE" 
                   TCGA-BR-7197                    TCGA-BR-7703 
"DEL PEAK 14(6P25.3) WILD-TYPE" "DEL PEAK 14(6P25.3) WILD-TYPE" 
                   TCGA-BR-7704                    TCGA-BR-7707 
"DEL PEAK 14(6P25.3) WILD-TYPE" "DEL PEAK 14(6P25.3) WILD-TYPE" 
                   TCGA-BR-7715                    TCGA-BR-7716 
"DEL PEAK 14(6P25.3) WILD-TYPE"   "DEL PEAK 14(6P25.3) MUTATED" 
                   TCGA-BR-7717                    TCGA-BR-7722 
"DEL PEAK 14(6P25.3) WILD-TYPE" "DEL PEAK 14(6P25.3) WILD-TYPE" 
                   TCGA-BR-7723                    TCGA-BR-7851 
"DEL PEAK 14(6P25.3) WILD-TYPE" "DEL PEAK 14(6P25.3) WILD-TYPE" 
                   TCGA-BR-7901                    TCGA-BR-7957 
  "DEL PEAK 14(6P25.3) MUTATED" "DEL PEAK 14(6P25.3) WILD-TYPE" 
                   TCGA-BR-7958                    TCGA-BR-7959 
"DEL PEAK 14(6P25.3) WILD-TYPE" "DEL PEAK 14(6P25.3) WILD-TYPE" 
                   TCGA-BR-8059                    TCGA-BR-8060 
"DEL PEAK 14(6P25.3) WILD-TYPE" "DEL PEAK 14(6P25.3) WILD-TYPE" 
                   TCGA-BR-8077                    TCGA-BR-8078 
"DEL PEAK 14(6P25.3) WILD-TYPE" "DEL PEAK 14(6P25.3) WILD-TYPE" 
                   TCGA-BR-8080                    TCGA-BR-8081 
"DEL PEAK 14(6P25.3) WILD-TYPE" "DEL PEAK 14(6P25.3) WILD-TYPE" 
                   TCGA-BR-8284                    TCGA-BR-8285 
"DEL PEAK 14(6P25.3) WILD-TYPE" "DEL PEAK 14(6P25.3) WILD-TYPE" 
                   TCGA-BR-8286                    TCGA-BR-8289 
"DEL PEAK 14(6P25.3) WILD-TYPE" "DEL PEAK 14(6P25.3) WILD-TYPE" 
                   TCGA-BR-8291                    TCGA-BR-8295 
"DEL PEAK 14(6P25.3) WILD-TYPE" "DEL PEAK 14(6P25.3) WILD-TYPE" 
                   TCGA-BR-8296                    TCGA-BR-8297 
"DEL PEAK 14(6P25.3) WILD-TYPE" "DEL PEAK 14(6P25.3) WILD-TYPE" 
                   TCGA-CD-5798                    TCGA-CD-5799 
"DEL PEAK 14(6P25.3) WILD-TYPE" "DEL PEAK 14(6P25.3) WILD-TYPE" 
                   TCGA-CD-5800                    TCGA-CD-5801 
  "DEL PEAK 14(6P25.3) MUTATED" "DEL PEAK 14(6P25.3) WILD-TYPE" 
                   TCGA-CD-5802                    TCGA-CD-5803 
  "DEL PEAK 14(6P25.3) MUTATED" "DEL PEAK 14(6P25.3) WILD-TYPE" 
                   TCGA-CG-4300                    TCGA-CG-4301 
"DEL PEAK 14(6P25.3) WILD-TYPE" "DEL PEAK 14(6P25.3) WILD-TYPE" 
                   TCGA-CG-4304                    TCGA-CG-4305 
"DEL PEAK 14(6P25.3) WILD-TYPE" "DEL PEAK 14(6P25.3) WILD-TYPE" 
                   TCGA-CG-4306                    TCGA-CG-4436 
"DEL PEAK 14(6P25.3) WILD-TYPE" "DEL PEAK 14(6P25.3) WILD-TYPE" 
                   TCGA-CG-4437                    TCGA-CG-4438 
  "DEL PEAK 14(6P25.3) MUTATED" "DEL PEAK 14(6P25.3) WILD-TYPE" 
                   TCGA-CG-4440                    TCGA-CG-4441 
"DEL PEAK 14(6P25.3) WILD-TYPE" "DEL PEAK 14(6P25.3) WILD-TYPE" 
                   TCGA-CG-4443                    TCGA-CG-4444 
"DEL PEAK 14(6P25.3) WILD-TYPE" "DEL PEAK 14(6P25.3) WILD-TYPE" 
                   TCGA-CG-4449                    TCGA-CG-4455 
"DEL PEAK 14(6P25.3) WILD-TYPE" "DEL PEAK 14(6P25.3) WILD-TYPE" 
                   TCGA-CG-4460                    TCGA-CG-4462 
"DEL PEAK 14(6P25.3) WILD-TYPE" "DEL PEAK 14(6P25.3) WILD-TYPE" 
                   TCGA-CG-4465                    TCGA-CG-4466 
"DEL PEAK 14(6P25.3) WILD-TYPE"   "DEL PEAK 14(6P25.3) MUTATED" 
                   TCGA-CG-4469                    TCGA-CG-4472 
"DEL PEAK 14(6P25.3) WILD-TYPE" "DEL PEAK 14(6P25.3) WILD-TYPE" 
                   TCGA-CG-4474                    TCGA-CG-4477 
"DEL PEAK 14(6P25.3) WILD-TYPE"   "DEL PEAK 14(6P25.3) MUTATED" 
                   TCGA-CG-5716                    TCGA-CG-5717 
"DEL PEAK 14(6P25.3) WILD-TYPE" "DEL PEAK 14(6P25.3) WILD-TYPE" 
                   TCGA-CG-5718                    TCGA-CG-5719 
"DEL PEAK 14(6P25.3) WILD-TYPE"   "DEL PEAK 14(6P25.3) MUTATED" 
                   TCGA-CG-5720                    TCGA-CG-5721 
"DEL PEAK 14(6P25.3) WILD-TYPE" "DEL PEAK 14(6P25.3) WILD-TYPE" 
                   TCGA-CG-5722                    TCGA-CG-5723 
"DEL PEAK 14(6P25.3) WILD-TYPE" "DEL PEAK 14(6P25.3) WILD-TYPE" 
                   TCGA-CG-5724                    TCGA-CG-5725 
  "DEL PEAK 14(6P25.3) MUTATED" "DEL PEAK 14(6P25.3) WILD-TYPE" 
                   TCGA-CG-5726                    TCGA-CG-5727 
"DEL PEAK 14(6P25.3) WILD-TYPE"   "DEL PEAK 14(6P25.3) MUTATED" 
                   TCGA-CG-5728                    TCGA-CG-5730 
  "DEL PEAK 14(6P25.3) MUTATED" "DEL PEAK 14(6P25.3) WILD-TYPE" 
                   TCGA-CG-5732                    TCGA-CG-5733 
  "DEL PEAK 14(6P25.3) MUTATED" "DEL PEAK 14(6P25.3) WILD-TYPE" 
                   TCGA-CG-5734                    TCGA-D7-5577 
"DEL PEAK 14(6P25.3) WILD-TYPE" "DEL PEAK 14(6P25.3) WILD-TYPE" 
                   TCGA-D7-5578                    TCGA-D7-5579 
  "DEL PEAK 14(6P25.3) MUTATED" "DEL PEAK 14(6P25.3) WILD-TYPE" 
                   TCGA-D7-6518                    TCGA-D7-6519 
  "DEL PEAK 14(6P25.3) MUTATED"   "DEL PEAK 14(6P25.3) MUTATED" 
                   TCGA-D7-6520                    TCGA-D7-6521 
  "DEL PEAK 14(6P25.3) MUTATED"   "DEL PEAK 14(6P25.3) MUTATED" 
                   TCGA-D7-6522                    TCGA-D7-6524 
"DEL PEAK 14(6P25.3) WILD-TYPE" "DEL PEAK 14(6P25.3) WILD-TYPE" 
                   TCGA-D7-6525                    TCGA-D7-6526 
  "DEL PEAK 14(6P25.3) MUTATED" "DEL PEAK 14(6P25.3) WILD-TYPE" 
                   TCGA-D7-6527                    TCGA-D7-6528 
"DEL PEAK 14(6P25.3) WILD-TYPE"   "DEL PEAK 14(6P25.3) MUTATED" 
                   TCGA-D7-6815                    TCGA-D7-6817 
  "DEL PEAK 14(6P25.3) MUTATED" "DEL PEAK 14(6P25.3) WILD-TYPE" 
                   TCGA-D7-6818                    TCGA-D7-6820 
"DEL PEAK 14(6P25.3) WILD-TYPE" "DEL PEAK 14(6P25.3) WILD-TYPE" 
                   TCGA-D7-6822                    TCGA-EQ-5647 
  "DEL PEAK 14(6P25.3) MUTATED" "DEL PEAK 14(6P25.3) WILD-TYPE" 
                   TCGA-EQ-8122                    TCGA-F1-6177 
"DEL PEAK 14(6P25.3) WILD-TYPE" "DEL PEAK 14(6P25.3) WILD-TYPE" 
                   TCGA-F1-6874                    TCGA-F1-6875 
"DEL PEAK 14(6P25.3) WILD-TYPE" "DEL PEAK 14(6P25.3) WILD-TYPE" 
                   TCGA-FP-7735                    TCGA-FP-7829 
"DEL PEAK 14(6P25.3) WILD-TYPE" "DEL PEAK 14(6P25.3) WILD-TYPE" 
                   TCGA-FP-7916                    TCGA-FP-7998 
"DEL PEAK 14(6P25.3) WILD-TYPE" "DEL PEAK 14(6P25.3) WILD-TYPE" 
                   TCGA-HJ-7597                    TCGA-IN-7806 
  "DEL PEAK 14(6P25.3) MUTATED" "DEL PEAK 14(6P25.3) WILD-TYPE" 
                   TCGA-IN-7808                    TCGA-IP-7968 
"DEL PEAK 14(6P25.3) WILD-TYPE" "DEL PEAK 14(6P25.3) WILD-TYPE" 
[1] "hr=" "2.8"
D40V2, continuous
D40V3, binary
[1] "tbl2"
                               cls
clus                            [,1] [,2]
  DEL PEAK 14(6P25.3) MUTATED     17   17
  DEL PEAK 14(6P25.3) WILD-TYPE   48   79
        clus
vv       DEL PEAK 14(6P25.3) MUTATED DEL PEAK 14(6P25.3) WILD-TYPE
  FEMALE                          17                            48
  MALE                            17                            79
D40V4, multiclass
D40V5, multiclass
    clus
vv   DEL PEAK 14(6P25.3) MUTATED DEL PEAK 14(6P25.3) WILD-TYPE
  T1                           0                             6
  T2                          16                            37
  T3                          13                            46
  T4                           3                            30
D40V6, multiclass
    clus
vv   DEL PEAK 14(6P25.3) MUTATED DEL PEAK 14(6P25.3) WILD-TYPE
  N0                          12                            38
  N1                           7                            50
  N2                           6                            18
  N3                           4                            15
D40V7, multiclass
    clus
vv   DEL PEAK 14(6P25.3) MUTATED DEL PEAK 14(6P25.3) WILD-TYPE
  M0                          28                           104
  M1                           2                            16
  MX                           4                             7
D40V8, multiclass
     clus
vv    DEL PEAK 14(6P25.3) MUTATED DEL PEAK 14(6P25.3) WILD-TYPE
  I                             6                            19
  II                            8                            35
  III                           9                            39
  IV                            6                            23
D40V9, binary
[1] "tbl2"
                               cls
clus                            [,1] [,2]
  DEL PEAK 14(6P25.3) MUTATED     33    1
  DEL PEAK 14(6P25.3) WILD-TYPE  123    4
     clus
vv    DEL PEAK 14(6P25.3) MUTATED DEL PEAK 14(6P25.3) WILD-TYPE
  NO                            1                             4
  YES                          33                           123

Clustering(41) Variable = Del Peak 15(6q26) mutation analysis
D41V1, survival
                 TCGA-B7-5816                  TCGA-B7-5818 
"DEL PEAK 15(6Q26) WILD-TYPE" "DEL PEAK 15(6Q26) WILD-TYPE" 
                 TCGA-BR-6452                  TCGA-BR-6455 
"DEL PEAK 15(6Q26) WILD-TYPE" "DEL PEAK 15(6Q26) WILD-TYPE" 
                 TCGA-BR-6457                  TCGA-BR-6458 
"DEL PEAK 15(6Q26) WILD-TYPE"   "DEL PEAK 15(6Q26) MUTATED" 
                 TCGA-BR-6563                  TCGA-BR-6564 
"DEL PEAK 15(6Q26) WILD-TYPE" "DEL PEAK 15(6Q26) WILD-TYPE" 
                 TCGA-BR-6565                  TCGA-BR-6566 
  "DEL PEAK 15(6Q26) MUTATED" "DEL PEAK 15(6Q26) WILD-TYPE" 
                 TCGA-BR-6705                  TCGA-BR-6706 
"DEL PEAK 15(6Q26) WILD-TYPE" "DEL PEAK 15(6Q26) WILD-TYPE" 
                 TCGA-BR-6707                  TCGA-BR-6709 
"DEL PEAK 15(6Q26) WILD-TYPE"   "DEL PEAK 15(6Q26) MUTATED" 
                 TCGA-BR-6710                  TCGA-BR-6801 
"DEL PEAK 15(6Q26) WILD-TYPE" "DEL PEAK 15(6Q26) WILD-TYPE" 
                 TCGA-BR-6802                  TCGA-BR-6803 
"DEL PEAK 15(6Q26) WILD-TYPE" "DEL PEAK 15(6Q26) WILD-TYPE" 
                 TCGA-BR-6852                  TCGA-BR-7196 
"DEL PEAK 15(6Q26) WILD-TYPE" "DEL PEAK 15(6Q26) WILD-TYPE" 
                 TCGA-BR-7197                  TCGA-BR-7703 
"DEL PEAK 15(6Q26) WILD-TYPE" "DEL PEAK 15(6Q26) WILD-TYPE" 
                 TCGA-BR-7704                  TCGA-BR-7707 
"DEL PEAK 15(6Q26) WILD-TYPE" "DEL PEAK 15(6Q26) WILD-TYPE" 
                 TCGA-BR-7715                  TCGA-BR-7716 
"DEL PEAK 15(6Q26) WILD-TYPE"   "DEL PEAK 15(6Q26) MUTATED" 
                 TCGA-BR-7717                  TCGA-BR-7722 
"DEL PEAK 15(6Q26) WILD-TYPE"   "DEL PEAK 15(6Q26) MUTATED" 
                 TCGA-BR-7723                  TCGA-BR-7851 
  "DEL PEAK 15(6Q26) MUTATED" "DEL PEAK 15(6Q26) WILD-TYPE" 
                 TCGA-BR-7901                  TCGA-BR-7957 
"DEL PEAK 15(6Q26) WILD-TYPE" "DEL PEAK 15(6Q26) WILD-TYPE" 
                 TCGA-BR-7958                  TCGA-BR-7959 
"DEL PEAK 15(6Q26) WILD-TYPE" "DEL PEAK 15(6Q26) WILD-TYPE" 
                 TCGA-BR-8059                  TCGA-BR-8060 
"DEL PEAK 15(6Q26) WILD-TYPE" "DEL PEAK 15(6Q26) WILD-TYPE" 
                 TCGA-BR-8077                  TCGA-BR-8078 
"DEL PEAK 15(6Q26) WILD-TYPE" "DEL PEAK 15(6Q26) WILD-TYPE" 
                 TCGA-BR-8080                  TCGA-BR-8081 
"DEL PEAK 15(6Q26) WILD-TYPE" "DEL PEAK 15(6Q26) WILD-TYPE" 
                 TCGA-BR-8284                  TCGA-BR-8285 
"DEL PEAK 15(6Q26) WILD-TYPE" "DEL PEAK 15(6Q26) WILD-TYPE" 
                 TCGA-BR-8286                  TCGA-BR-8289 
"DEL PEAK 15(6Q26) WILD-TYPE" "DEL PEAK 15(6Q26) WILD-TYPE" 
                 TCGA-BR-8291                  TCGA-BR-8295 
"DEL PEAK 15(6Q26) WILD-TYPE" "DEL PEAK 15(6Q26) WILD-TYPE" 
                 TCGA-BR-8296                  TCGA-BR-8297 
"DEL PEAK 15(6Q26) WILD-TYPE" "DEL PEAK 15(6Q26) WILD-TYPE" 
                 TCGA-CD-5798                  TCGA-CD-5799 
"DEL PEAK 15(6Q26) WILD-TYPE" "DEL PEAK 15(6Q26) WILD-TYPE" 
                 TCGA-CD-5800                  TCGA-CD-5801 
  "DEL PEAK 15(6Q26) MUTATED" "DEL PEAK 15(6Q26) WILD-TYPE" 
                 TCGA-CD-5802                  TCGA-CD-5803 
"DEL PEAK 15(6Q26) WILD-TYPE"   "DEL PEAK 15(6Q26) MUTATED" 
                 TCGA-CG-4300                  TCGA-CG-4301 
"DEL PEAK 15(6Q26) WILD-TYPE"   "DEL PEAK 15(6Q26) MUTATED" 
                 TCGA-CG-4304                  TCGA-CG-4305 
"DEL PEAK 15(6Q26) WILD-TYPE"   "DEL PEAK 15(6Q26) MUTATED" 
                 TCGA-CG-4306                  TCGA-CG-4436 
"DEL PEAK 15(6Q26) WILD-TYPE" "DEL PEAK 15(6Q26) WILD-TYPE" 
                 TCGA-CG-4437                  TCGA-CG-4438 
  "DEL PEAK 15(6Q26) MUTATED" "DEL PEAK 15(6Q26) WILD-TYPE" 
                 TCGA-CG-4440                  TCGA-CG-4441 
  "DEL PEAK 15(6Q26) MUTATED" "DEL PEAK 15(6Q26) WILD-TYPE" 
                 TCGA-CG-4443                  TCGA-CG-4444 
  "DEL PEAK 15(6Q26) MUTATED" "DEL PEAK 15(6Q26) WILD-TYPE" 
                 TCGA-CG-4449                  TCGA-CG-4455 
"DEL PEAK 15(6Q26) WILD-TYPE"   "DEL PEAK 15(6Q26) MUTATED" 
                 TCGA-CG-4460                  TCGA-CG-4462 
"DEL PEAK 15(6Q26) WILD-TYPE" "DEL PEAK 15(6Q26) WILD-TYPE" 
                 TCGA-CG-4465                  TCGA-CG-4466 
"DEL PEAK 15(6Q26) WILD-TYPE" "DEL PEAK 15(6Q26) WILD-TYPE" 
                 TCGA-CG-4469                  TCGA-CG-4472 
  "DEL PEAK 15(6Q26) MUTATED"   "DEL PEAK 15(6Q26) MUTATED" 
                 TCGA-CG-4474                  TCGA-CG-4477 
"DEL PEAK 15(6Q26) WILD-TYPE" "DEL PEAK 15(6Q26) WILD-TYPE" 
                 TCGA-CG-5716                  TCGA-CG-5717 
"DEL PEAK 15(6Q26) WILD-TYPE"   "DEL PEAK 15(6Q26) MUTATED" 
                 TCGA-CG-5718                  TCGA-CG-5719 
"DEL PEAK 15(6Q26) WILD-TYPE"   "DEL PEAK 15(6Q26) MUTATED" 
                 TCGA-CG-5720                  TCGA-CG-5721 
"DEL PEAK 15(6Q26) WILD-TYPE" "DEL PEAK 15(6Q26) WILD-TYPE" 
                 TCGA-CG-5722                  TCGA-CG-5723 
"DEL PEAK 15(6Q26) WILD-TYPE" "DEL PEAK 15(6Q26) WILD-TYPE" 
                 TCGA-CG-5724                  TCGA-CG-5725 
  "DEL PEAK 15(6Q26) MUTATED"   "DEL PEAK 15(6Q26) MUTATED" 
                 TCGA-CG-5726                  TCGA-CG-5727 
"DEL PEAK 15(6Q26) WILD-TYPE" "DEL PEAK 15(6Q26) WILD-TYPE" 
                 TCGA-CG-5728                  TCGA-CG-5730 
"DEL PEAK 15(6Q26) WILD-TYPE" "DEL PEAK 15(6Q26) WILD-TYPE" 
                 TCGA-CG-5732                  TCGA-CG-5733 
  "DEL PEAK 15(6Q26) MUTATED" "DEL PEAK 15(6Q26) WILD-TYPE" 
                 TCGA-CG-5734                  TCGA-D7-5577 
"DEL PEAK 15(6Q26) WILD-TYPE" "DEL PEAK 15(6Q26) WILD-TYPE" 
                 TCGA-D7-5578                  TCGA-D7-5579 
  "DEL PEAK 15(6Q26) MUTATED" "DEL PEAK 15(6Q26) WILD-TYPE" 
                 TCGA-D7-6518                  TCGA-D7-6519 
"DEL PEAK 15(6Q26) WILD-TYPE"   "DEL PEAK 15(6Q26) MUTATED" 
                 TCGA-D7-6520                  TCGA-D7-6521 
"DEL PEAK 15(6Q26) WILD-TYPE"   "DEL PEAK 15(6Q26) MUTATED" 
                 TCGA-D7-6522                  TCGA-D7-6524 
"DEL PEAK 15(6Q26) WILD-TYPE" "DEL PEAK 15(6Q26) WILD-TYPE" 
                 TCGA-D7-6525                  TCGA-D7-6526 
  "DEL PEAK 15(6Q26) MUTATED"   "DEL PEAK 15(6Q26) MUTATED" 
                 TCGA-D7-6527                  TCGA-D7-6528 
"DEL PEAK 15(6Q26) WILD-TYPE" "DEL PEAK 15(6Q26) WILD-TYPE" 
                 TCGA-D7-6815                  TCGA-D7-6817 
"DEL PEAK 15(6Q26) WILD-TYPE" "DEL PEAK 15(6Q26) WILD-TYPE" 
                 TCGA-D7-6818                  TCGA-D7-6820 
"DEL PEAK 15(6Q26) WILD-TYPE" "DEL PEAK 15(6Q26) WILD-TYPE" 
                 TCGA-D7-6822                  TCGA-EQ-5647 
"DEL PEAK 15(6Q26) WILD-TYPE" "DEL PEAK 15(6Q26) WILD-TYPE" 
                 TCGA-EQ-8122                  TCGA-F1-6177 
"DEL PEAK 15(6Q26) WILD-TYPE" "DEL PEAK 15(6Q26) WILD-TYPE" 
                 TCGA-F1-6874                  TCGA-F1-6875 
"DEL PEAK 15(6Q26) WILD-TYPE" "DEL PEAK 15(6Q26) WILD-TYPE" 
                 TCGA-FP-7735                  TCGA-FP-7829 
"DEL PEAK 15(6Q26) WILD-TYPE" "DEL PEAK 15(6Q26) WILD-TYPE" 
                 TCGA-FP-7916                  TCGA-FP-7998 
"DEL PEAK 15(6Q26) WILD-TYPE" "DEL PEAK 15(6Q26) WILD-TYPE" 
                 TCGA-HJ-7597                  TCGA-IN-7806 
  "DEL PEAK 15(6Q26) MUTATED" "DEL PEAK 15(6Q26) WILD-TYPE" 
                 TCGA-IN-7808                  TCGA-IP-7968 
"DEL PEAK 15(6Q26) WILD-TYPE" "DEL PEAK 15(6Q26) WILD-TYPE" 
                 TCGA-B7-5816                  TCGA-B7-5818 
"DEL PEAK 15(6Q26) WILD-TYPE" "DEL PEAK 15(6Q26) WILD-TYPE" 
                 TCGA-BR-6452                  TCGA-BR-6455 
"DEL PEAK 15(6Q26) WILD-TYPE" "DEL PEAK 15(6Q26) WILD-TYPE" 
                 TCGA-BR-6457                  TCGA-BR-6458 
"DEL PEAK 15(6Q26) WILD-TYPE"   "DEL PEAK 15(6Q26) MUTATED" 
                 TCGA-BR-6563                  TCGA-BR-6564 
"DEL PEAK 15(6Q26) WILD-TYPE" "DEL PEAK 15(6Q26) WILD-TYPE" 
                 TCGA-BR-6565                  TCGA-BR-6566 
  "DEL PEAK 15(6Q26) MUTATED" "DEL PEAK 15(6Q26) WILD-TYPE" 
                 TCGA-BR-6705                  TCGA-BR-6706 
"DEL PEAK 15(6Q26) WILD-TYPE" "DEL PEAK 15(6Q26) WILD-TYPE" 
                 TCGA-BR-6707                  TCGA-BR-6709 
"DEL PEAK 15(6Q26) WILD-TYPE"   "DEL PEAK 15(6Q26) MUTATED" 
                 TCGA-BR-6710                  TCGA-BR-6801 
"DEL PEAK 15(6Q26) WILD-TYPE" "DEL PEAK 15(6Q26) WILD-TYPE" 
                 TCGA-BR-6802                  TCGA-BR-6803 
"DEL PEAK 15(6Q26) WILD-TYPE" "DEL PEAK 15(6Q26) WILD-TYPE" 
                 TCGA-BR-6852                  TCGA-BR-7196 
"DEL PEAK 15(6Q26) WILD-TYPE" "DEL PEAK 15(6Q26) WILD-TYPE" 
                 TCGA-BR-7197                  TCGA-BR-7703 
"DEL PEAK 15(6Q26) WILD-TYPE" "DEL PEAK 15(6Q26) WILD-TYPE" 
                 TCGA-BR-7704                  TCGA-BR-7707 
"DEL PEAK 15(6Q26) WILD-TYPE" "DEL PEAK 15(6Q26) WILD-TYPE" 
                 TCGA-BR-7715                  TCGA-BR-7716 
"DEL PEAK 15(6Q26) WILD-TYPE"   "DEL PEAK 15(6Q26) MUTATED" 
                 TCGA-BR-7717                  TCGA-BR-7722 
"DEL PEAK 15(6Q26) WILD-TYPE"   "DEL PEAK 15(6Q26) MUTATED" 
                 TCGA-BR-7723                  TCGA-BR-7851 
  "DEL PEAK 15(6Q26) MUTATED" "DEL PEAK 15(6Q26) WILD-TYPE" 
                 TCGA-BR-7901                  TCGA-BR-7957 
"DEL PEAK 15(6Q26) WILD-TYPE" "DEL PEAK 15(6Q26) WILD-TYPE" 
                 TCGA-BR-7958                  TCGA-BR-7959 
"DEL PEAK 15(6Q26) WILD-TYPE" "DEL PEAK 15(6Q26) WILD-TYPE" 
                 TCGA-BR-8059                  TCGA-BR-8060 
"DEL PEAK 15(6Q26) WILD-TYPE" "DEL PEAK 15(6Q26) WILD-TYPE" 
                 TCGA-BR-8077                  TCGA-BR-8078 
"DEL PEAK 15(6Q26) WILD-TYPE" "DEL PEAK 15(6Q26) WILD-TYPE" 
                 TCGA-BR-8080                  TCGA-BR-8081 
"DEL PEAK 15(6Q26) WILD-TYPE" "DEL PEAK 15(6Q26) WILD-TYPE" 
                 TCGA-BR-8284                  TCGA-BR-8285 
"DEL PEAK 15(6Q26) WILD-TYPE" "DEL PEAK 15(6Q26) WILD-TYPE" 
                 TCGA-BR-8286                  TCGA-BR-8289 
"DEL PEAK 15(6Q26) WILD-TYPE" "DEL PEAK 15(6Q26) WILD-TYPE" 
                 TCGA-BR-8291                  TCGA-BR-8295 
"DEL PEAK 15(6Q26) WILD-TYPE" "DEL PEAK 15(6Q26) WILD-TYPE" 
                 TCGA-BR-8296                  TCGA-BR-8297 
"DEL PEAK 15(6Q26) WILD-TYPE" "DEL PEAK 15(6Q26) WILD-TYPE" 
                 TCGA-CD-5798                  TCGA-CD-5799 
"DEL PEAK 15(6Q26) WILD-TYPE" "DEL PEAK 15(6Q26) WILD-TYPE" 
                 TCGA-CD-5800                  TCGA-CD-5801 
  "DEL PEAK 15(6Q26) MUTATED" "DEL PEAK 15(6Q26) WILD-TYPE" 
                 TCGA-CD-5802                  TCGA-CD-5803 
"DEL PEAK 15(6Q26) WILD-TYPE"   "DEL PEAK 15(6Q26) MUTATED" 
                 TCGA-CG-4300                  TCGA-CG-4301 
"DEL PEAK 15(6Q26) WILD-TYPE"   "DEL PEAK 15(6Q26) MUTATED" 
                 TCGA-CG-4304                  TCGA-CG-4305 
"DEL PEAK 15(6Q26) WILD-TYPE"   "DEL PEAK 15(6Q26) MUTATED" 
                 TCGA-CG-4306                  TCGA-CG-4436 
"DEL PEAK 15(6Q26) WILD-TYPE" "DEL PEAK 15(6Q26) WILD-TYPE" 
                 TCGA-CG-4437                  TCGA-CG-4438 
  "DEL PEAK 15(6Q26) MUTATED" "DEL PEAK 15(6Q26) WILD-TYPE" 
                 TCGA-CG-4440                  TCGA-CG-4441 
  "DEL PEAK 15(6Q26) MUTATED" "DEL PEAK 15(6Q26) WILD-TYPE" 
                 TCGA-CG-4443                  TCGA-CG-4444 
  "DEL PEAK 15(6Q26) MUTATED" "DEL PEAK 15(6Q26) WILD-TYPE" 
                 TCGA-CG-4449                  TCGA-CG-4455 
"DEL PEAK 15(6Q26) WILD-TYPE"   "DEL PEAK 15(6Q26) MUTATED" 
                 TCGA-CG-4460                  TCGA-CG-4462 
"DEL PEAK 15(6Q26) WILD-TYPE" "DEL PEAK 15(6Q26) WILD-TYPE" 
                 TCGA-CG-4465                  TCGA-CG-4466 
"DEL PEAK 15(6Q26) WILD-TYPE" "DEL PEAK 15(6Q26) WILD-TYPE" 
                 TCGA-CG-4469                  TCGA-CG-4472 
  "DEL PEAK 15(6Q26) MUTATED"   "DEL PEAK 15(6Q26) MUTATED" 
                 TCGA-CG-4474                  TCGA-CG-4477 
"DEL PEAK 15(6Q26) WILD-TYPE" "DEL PEAK 15(6Q26) WILD-TYPE" 
                 TCGA-CG-5716                  TCGA-CG-5717 
"DEL PEAK 15(6Q26) WILD-TYPE"   "DEL PEAK 15(6Q26) MUTATED" 
                 TCGA-CG-5718                  TCGA-CG-5719 
"DEL PEAK 15(6Q26) WILD-TYPE"   "DEL PEAK 15(6Q26) MUTATED" 
                 TCGA-CG-5720                  TCGA-CG-5721 
"DEL PEAK 15(6Q26) WILD-TYPE" "DEL PEAK 15(6Q26) WILD-TYPE" 
                 TCGA-CG-5722                  TCGA-CG-5723 
"DEL PEAK 15(6Q26) WILD-TYPE" "DEL PEAK 15(6Q26) WILD-TYPE" 
                 TCGA-CG-5724                  TCGA-CG-5725 
  "DEL PEAK 15(6Q26) MUTATED"   "DEL PEAK 15(6Q26) MUTATED" 
                 TCGA-CG-5726                  TCGA-CG-5727 
"DEL PEAK 15(6Q26) WILD-TYPE" "DEL PEAK 15(6Q26) WILD-TYPE" 
                 TCGA-CG-5728                  TCGA-CG-5730 
"DEL PEAK 15(6Q26) WILD-TYPE" "DEL PEAK 15(6Q26) WILD-TYPE" 
                 TCGA-CG-5732                  TCGA-CG-5733 
  "DEL PEAK 15(6Q26) MUTATED" "DEL PEAK 15(6Q26) WILD-TYPE" 
                 TCGA-CG-5734                  TCGA-D7-5577 
"DEL PEAK 15(6Q26) WILD-TYPE" "DEL PEAK 15(6Q26) WILD-TYPE" 
                 TCGA-D7-5578                  TCGA-D7-5579 
  "DEL PEAK 15(6Q26) MUTATED" "DEL PEAK 15(6Q26) WILD-TYPE" 
                 TCGA-D7-6518                  TCGA-D7-6519 
"DEL PEAK 15(6Q26) WILD-TYPE"   "DEL PEAK 15(6Q26) MUTATED" 
                 TCGA-D7-6520                  TCGA-D7-6521 
"DEL PEAK 15(6Q26) WILD-TYPE"   "DEL PEAK 15(6Q26) MUTATED" 
                 TCGA-D7-6522                  TCGA-D7-6524 
"DEL PEAK 15(6Q26) WILD-TYPE" "DEL PEAK 15(6Q26) WILD-TYPE" 
                 TCGA-D7-6525                  TCGA-D7-6526 
  "DEL PEAK 15(6Q26) MUTATED"   "DEL PEAK 15(6Q26) MUTATED" 
                 TCGA-D7-6527                  TCGA-D7-6528 
"DEL PEAK 15(6Q26) WILD-TYPE" "DEL PEAK 15(6Q26) WILD-TYPE" 
                 TCGA-D7-6815                  TCGA-D7-6817 
"DEL PEAK 15(6Q26) WILD-TYPE" "DEL PEAK 15(6Q26) WILD-TYPE" 
                 TCGA-D7-6818                  TCGA-D7-6820 
"DEL PEAK 15(6Q26) WILD-TYPE" "DEL PEAK 15(6Q26) WILD-TYPE" 
                 TCGA-D7-6822                  TCGA-EQ-5647 
"DEL PEAK 15(6Q26) WILD-TYPE" "DEL PEAK 15(6Q26) WILD-TYPE" 
                 TCGA-EQ-8122                  TCGA-F1-6177 
"DEL PEAK 15(6Q26) WILD-TYPE" "DEL PEAK 15(6Q26) WILD-TYPE" 
                 TCGA-F1-6874                  TCGA-F1-6875 
"DEL PEAK 15(6Q26) WILD-TYPE" "DEL PEAK 15(6Q26) WILD-TYPE" 
                 TCGA-FP-7735                  TCGA-FP-7829 
"DEL PEAK 15(6Q26) WILD-TYPE" "DEL PEAK 15(6Q26) WILD-TYPE" 
                 TCGA-FP-7916                  TCGA-FP-7998 
"DEL PEAK 15(6Q26) WILD-TYPE" "DEL PEAK 15(6Q26) WILD-TYPE" 
                 TCGA-HJ-7597                  TCGA-IN-7806 
  "DEL PEAK 15(6Q26) MUTATED" "DEL PEAK 15(6Q26) WILD-TYPE" 
                 TCGA-IN-7808                  TCGA-IP-7968 
"DEL PEAK 15(6Q26) WILD-TYPE" "DEL PEAK 15(6Q26) WILD-TYPE" 
                 TCGA-B7-5816                  TCGA-B7-5818 
"DEL PEAK 15(6Q26) WILD-TYPE" "DEL PEAK 15(6Q26) WILD-TYPE" 
                 TCGA-BR-6452                  TCGA-BR-6455 
"DEL PEAK 15(6Q26) WILD-TYPE" "DEL PEAK 15(6Q26) WILD-TYPE" 
                 TCGA-BR-6457                  TCGA-BR-6458 
"DEL PEAK 15(6Q26) WILD-TYPE"   "DEL PEAK 15(6Q26) MUTATED" 
                 TCGA-BR-6563                  TCGA-BR-6564 
"DEL PEAK 15(6Q26) WILD-TYPE" "DEL PEAK 15(6Q26) WILD-TYPE" 
                 TCGA-BR-6565                  TCGA-BR-6566 
  "DEL PEAK 15(6Q26) MUTATED" "DEL PEAK 15(6Q26) WILD-TYPE" 
                 TCGA-BR-6705                  TCGA-BR-6706 
"DEL PEAK 15(6Q26) WILD-TYPE" "DEL PEAK 15(6Q26) WILD-TYPE" 
                 TCGA-BR-6707                  TCGA-BR-6709 
"DEL PEAK 15(6Q26) WILD-TYPE"   "DEL PEAK 15(6Q26) MUTATED" 
                 TCGA-BR-6710                  TCGA-BR-6801 
"DEL PEAK 15(6Q26) WILD-TYPE" "DEL PEAK 15(6Q26) WILD-TYPE" 
                 TCGA-BR-6802                  TCGA-BR-6803 
"DEL PEAK 15(6Q26) WILD-TYPE" "DEL PEAK 15(6Q26) WILD-TYPE" 
                 TCGA-BR-6852                  TCGA-BR-7196 
"DEL PEAK 15(6Q26) WILD-TYPE" "DEL PEAK 15(6Q26) WILD-TYPE" 
                 TCGA-BR-7197                  TCGA-BR-7703 
"DEL PEAK 15(6Q26) WILD-TYPE" "DEL PEAK 15(6Q26) WILD-TYPE" 
                 TCGA-BR-7704                  TCGA-BR-7707 
"DEL PEAK 15(6Q26) WILD-TYPE" "DEL PEAK 15(6Q26) WILD-TYPE" 
                 TCGA-BR-7715                  TCGA-BR-7716 
"DEL PEAK 15(6Q26) WILD-TYPE"   "DEL PEAK 15(6Q26) MUTATED" 
                 TCGA-BR-7717                  TCGA-BR-7722 
"DEL PEAK 15(6Q26) WILD-TYPE"   "DEL PEAK 15(6Q26) MUTATED" 
                 TCGA-BR-7723                  TCGA-BR-7851 
  "DEL PEAK 15(6Q26) MUTATED" "DEL PEAK 15(6Q26) WILD-TYPE" 
                 TCGA-BR-7901                  TCGA-BR-7957 
"DEL PEAK 15(6Q26) WILD-TYPE" "DEL PEAK 15(6Q26) WILD-TYPE" 
                 TCGA-BR-7958                  TCGA-BR-7959 
"DEL PEAK 15(6Q26) WILD-TYPE" "DEL PEAK 15(6Q26) WILD-TYPE" 
                 TCGA-BR-8059                  TCGA-BR-8060 
"DEL PEAK 15(6Q26) WILD-TYPE" "DEL PEAK 15(6Q26) WILD-TYPE" 
                 TCGA-BR-8077                  TCGA-BR-8078 
"DEL PEAK 15(6Q26) WILD-TYPE" "DEL PEAK 15(6Q26) WILD-TYPE" 
                 TCGA-BR-8080                  TCGA-BR-8081 
"DEL PEAK 15(6Q26) WILD-TYPE" "DEL PEAK 15(6Q26) WILD-TYPE" 
                 TCGA-BR-8284                  TCGA-BR-8285 
"DEL PEAK 15(6Q26) WILD-TYPE" "DEL PEAK 15(6Q26) WILD-TYPE" 
                 TCGA-BR-8286                  TCGA-BR-8289 
"DEL PEAK 15(6Q26) WILD-TYPE" "DEL PEAK 15(6Q26) WILD-TYPE" 
                 TCGA-BR-8291                  TCGA-BR-8295 
"DEL PEAK 15(6Q26) WILD-TYPE" "DEL PEAK 15(6Q26) WILD-TYPE" 
                 TCGA-BR-8296                  TCGA-BR-8297 
"DEL PEAK 15(6Q26) WILD-TYPE" "DEL PEAK 15(6Q26) WILD-TYPE" 
                 TCGA-CD-5798                  TCGA-CD-5799 
"DEL PEAK 15(6Q26) WILD-TYPE" "DEL PEAK 15(6Q26) WILD-TYPE" 
                 TCGA-CD-5800                  TCGA-CD-5801 
  "DEL PEAK 15(6Q26) MUTATED" "DEL PEAK 15(6Q26) WILD-TYPE" 
                 TCGA-CD-5802                  TCGA-CD-5803 
"DEL PEAK 15(6Q26) WILD-TYPE"   "DEL PEAK 15(6Q26) MUTATED" 
                 TCGA-CG-4300                  TCGA-CG-4301 
"DEL PEAK 15(6Q26) WILD-TYPE"   "DEL PEAK 15(6Q26) MUTATED" 
                 TCGA-CG-4304                  TCGA-CG-4305 
"DEL PEAK 15(6Q26) WILD-TYPE"   "DEL PEAK 15(6Q26) MUTATED" 
                 TCGA-CG-4306                  TCGA-CG-4436 
"DEL PEAK 15(6Q26) WILD-TYPE" "DEL PEAK 15(6Q26) WILD-TYPE" 
                 TCGA-CG-4437                  TCGA-CG-4438 
  "DEL PEAK 15(6Q26) MUTATED" "DEL PEAK 15(6Q26) WILD-TYPE" 
                 TCGA-CG-4440                  TCGA-CG-4441 
  "DEL PEAK 15(6Q26) MUTATED" "DEL PEAK 15(6Q26) WILD-TYPE" 
                 TCGA-CG-4443                  TCGA-CG-4444 
  "DEL PEAK 15(6Q26) MUTATED" "DEL PEAK 15(6Q26) WILD-TYPE" 
                 TCGA-CG-4449                  TCGA-CG-4455 
"DEL PEAK 15(6Q26) WILD-TYPE"   "DEL PEAK 15(6Q26) MUTATED" 
                 TCGA-CG-4460                  TCGA-CG-4462 
"DEL PEAK 15(6Q26) WILD-TYPE" "DEL PEAK 15(6Q26) WILD-TYPE" 
                 TCGA-CG-4465                  TCGA-CG-4466 
"DEL PEAK 15(6Q26) WILD-TYPE" "DEL PEAK 15(6Q26) WILD-TYPE" 
                 TCGA-CG-4469                  TCGA-CG-4472 
  "DEL PEAK 15(6Q26) MUTATED"   "DEL PEAK 15(6Q26) MUTATED" 
                 TCGA-CG-4474                  TCGA-CG-4477 
"DEL PEAK 15(6Q26) WILD-TYPE" "DEL PEAK 15(6Q26) WILD-TYPE" 
                 TCGA-CG-5716                  TCGA-CG-5717 
"DEL PEAK 15(6Q26) WILD-TYPE"   "DEL PEAK 15(6Q26) MUTATED" 
                 TCGA-CG-5718                  TCGA-CG-5719 
"DEL PEAK 15(6Q26) WILD-TYPE"   "DEL PEAK 15(6Q26) MUTATED" 
                 TCGA-CG-5720                  TCGA-CG-5721 
"DEL PEAK 15(6Q26) WILD-TYPE" "DEL PEAK 15(6Q26) WILD-TYPE" 
                 TCGA-CG-5722                  TCGA-CG-5723 
"DEL PEAK 15(6Q26) WILD-TYPE" "DEL PEAK 15(6Q26) WILD-TYPE" 
                 TCGA-CG-5724                  TCGA-CG-5725 
  "DEL PEAK 15(6Q26) MUTATED"   "DEL PEAK 15(6Q26) MUTATED" 
                 TCGA-CG-5726                  TCGA-CG-5727 
"DEL PEAK 15(6Q26) WILD-TYPE" "DEL PEAK 15(6Q26) WILD-TYPE" 
                 TCGA-CG-5728                  TCGA-CG-5730 
"DEL PEAK 15(6Q26) WILD-TYPE" "DEL PEAK 15(6Q26) WILD-TYPE" 
                 TCGA-CG-5732                  TCGA-CG-5733 
  "DEL PEAK 15(6Q26) MUTATED" "DEL PEAK 15(6Q26) WILD-TYPE" 
                 TCGA-CG-5734                  TCGA-D7-5577 
"DEL PEAK 15(6Q26) WILD-TYPE" "DEL PEAK 15(6Q26) WILD-TYPE" 
                 TCGA-D7-5578                  TCGA-D7-5579 
  "DEL PEAK 15(6Q26) MUTATED" "DEL PEAK 15(6Q26) WILD-TYPE" 
                 TCGA-D7-6518                  TCGA-D7-6519 
"DEL PEAK 15(6Q26) WILD-TYPE"   "DEL PEAK 15(6Q26) MUTATED" 
                 TCGA-D7-6520                  TCGA-D7-6521 
"DEL PEAK 15(6Q26) WILD-TYPE"   "DEL PEAK 15(6Q26) MUTATED" 
                 TCGA-D7-6522                  TCGA-D7-6524 
"DEL PEAK 15(6Q26) WILD-TYPE" "DEL PEAK 15(6Q26) WILD-TYPE" 
                 TCGA-D7-6525                  TCGA-D7-6526 
  "DEL PEAK 15(6Q26) MUTATED"   "DEL PEAK 15(6Q26) MUTATED" 
                 TCGA-D7-6527                  TCGA-D7-6528 
"DEL PEAK 15(6Q26) WILD-TYPE" "DEL PEAK 15(6Q26) WILD-TYPE" 
                 TCGA-D7-6815                  TCGA-D7-6817 
"DEL PEAK 15(6Q26) WILD-TYPE" "DEL PEAK 15(6Q26) WILD-TYPE" 
                 TCGA-D7-6818                  TCGA-D7-6820 
"DEL PEAK 15(6Q26) WILD-TYPE" "DEL PEAK 15(6Q26) WILD-TYPE" 
                 TCGA-D7-6822                  TCGA-EQ-5647 
"DEL PEAK 15(6Q26) WILD-TYPE" "DEL PEAK 15(6Q26) WILD-TYPE" 
                 TCGA-EQ-8122                  TCGA-F1-6177 
"DEL PEAK 15(6Q26) WILD-TYPE" "DEL PEAK 15(6Q26) WILD-TYPE" 
                 TCGA-F1-6874                  TCGA-F1-6875 
"DEL PEAK 15(6Q26) WILD-TYPE" "DEL PEAK 15(6Q26) WILD-TYPE" 
                 TCGA-FP-7735                  TCGA-FP-7829 
"DEL PEAK 15(6Q26) WILD-TYPE" "DEL PEAK 15(6Q26) WILD-TYPE" 
                 TCGA-FP-7916                  TCGA-FP-7998 
"DEL PEAK 15(6Q26) WILD-TYPE" "DEL PEAK 15(6Q26) WILD-TYPE" 
                 TCGA-HJ-7597                  TCGA-IN-7806 
  "DEL PEAK 15(6Q26) MUTATED" "DEL PEAK 15(6Q26) WILD-TYPE" 
                 TCGA-IN-7808                  TCGA-IP-7968 
"DEL PEAK 15(6Q26) WILD-TYPE" "DEL PEAK 15(6Q26) WILD-TYPE" 
[1] "hr=" "1.6"
D41V2, continuous
D41V3, binary
[1] "tbl2"
                             cls
clus                          [,1] [,2]
  DEL PEAK 15(6Q26) MUTATED     14   21
  DEL PEAK 15(6Q26) WILD-TYPE   51   75
        clus
vv       DEL PEAK 15(6Q26) MUTATED DEL PEAK 15(6Q26) WILD-TYPE
  FEMALE                        14                          51
  MALE                          21                          75
D41V4, multiclass
D41V5, multiclass
    clus
vv   DEL PEAK 15(6Q26) MUTATED DEL PEAK 15(6Q26) WILD-TYPE
  T1                         1                           5
  T2                        13                          40
  T3                        15                          44
  T4                         5                          28
D41V6, multiclass
    clus
vv   DEL PEAK 15(6Q26) MUTATED DEL PEAK 15(6Q26) WILD-TYPE
  N0                         8                          42
  N1                        14                          43
  N2                         6                          18
  N3                         6                          13
D41V7, multiclass
    clus
vv   DEL PEAK 15(6Q26) MUTATED DEL PEAK 15(6Q26) WILD-TYPE
  M0                        29                         103
  M1                         4                          14
  MX                         2                           9
D41V8, multiclass
     clus
vv    DEL PEAK 15(6Q26) MUTATED DEL PEAK 15(6Q26) WILD-TYPE
  I                           4                          21
  II                         10                          33
  III                        10                          38
  IV                          9                          20
D41V9, binary
[1] "tbl2"
                             cls
clus                          [,1] [,2]
  DEL PEAK 15(6Q26) MUTATED     33    2
  DEL PEAK 15(6Q26) WILD-TYPE  123    3
     clus
vv    DEL PEAK 15(6Q26) MUTATED DEL PEAK 15(6Q26) WILD-TYPE
  NO                          2                           3
  YES                        33                         123

Clustering(42) Variable = Del Peak 16(6q27) mutation analysis
D42V1, survival
                 TCGA-B7-5816                  TCGA-B7-5818 
"DEL PEAK 16(6Q27) WILD-TYPE" "DEL PEAK 16(6Q27) WILD-TYPE" 
                 TCGA-BR-6452                  TCGA-BR-6455 
"DEL PEAK 16(6Q27) WILD-TYPE" "DEL PEAK 16(6Q27) WILD-TYPE" 
                 TCGA-BR-6457                  TCGA-BR-6458 
"DEL PEAK 16(6Q27) WILD-TYPE"   "DEL PEAK 16(6Q27) MUTATED" 
                 TCGA-BR-6563                  TCGA-BR-6564 
"DEL PEAK 16(6Q27) WILD-TYPE" "DEL PEAK 16(6Q27) WILD-TYPE" 
                 TCGA-BR-6565                  TCGA-BR-6566 
  "DEL PEAK 16(6Q27) MUTATED" "DEL PEAK 16(6Q27) WILD-TYPE" 
                 TCGA-BR-6705                  TCGA-BR-6706 
"DEL PEAK 16(6Q27) WILD-TYPE" "DEL PEAK 16(6Q27) WILD-TYPE" 
                 TCGA-BR-6707                  TCGA-BR-6709 
"DEL PEAK 16(6Q27) WILD-TYPE"   "DEL PEAK 16(6Q27) MUTATED" 
                 TCGA-BR-6710                  TCGA-BR-6801 
"DEL PEAK 16(6Q27) WILD-TYPE" "DEL PEAK 16(6Q27) WILD-TYPE" 
                 TCGA-BR-6802                  TCGA-BR-6803 
"DEL PEAK 16(6Q27) WILD-TYPE" "DEL PEAK 16(6Q27) WILD-TYPE" 
                 TCGA-BR-6852                  TCGA-BR-7196 
"DEL PEAK 16(6Q27) WILD-TYPE" "DEL PEAK 16(6Q27) WILD-TYPE" 
                 TCGA-BR-7197                  TCGA-BR-7703 
"DEL PEAK 16(6Q27) WILD-TYPE" "DEL PEAK 16(6Q27) WILD-TYPE" 
                 TCGA-BR-7704                  TCGA-BR-7707 
"DEL PEAK 16(6Q27) WILD-TYPE" "DEL PEAK 16(6Q27) WILD-TYPE" 
                 TCGA-BR-7715                  TCGA-BR-7716 
"DEL PEAK 16(6Q27) WILD-TYPE"   "DEL PEAK 16(6Q27) MUTATED" 
                 TCGA-BR-7717                  TCGA-BR-7722 
"DEL PEAK 16(6Q27) WILD-TYPE"   "DEL PEAK 16(6Q27) MUTATED" 
                 TCGA-BR-7723                  TCGA-BR-7851 
  "DEL PEAK 16(6Q27) MUTATED" "DEL PEAK 16(6Q27) WILD-TYPE" 
                 TCGA-BR-7901                  TCGA-BR-7957 
"DEL PEAK 16(6Q27) WILD-TYPE" "DEL PEAK 16(6Q27) WILD-TYPE" 
                 TCGA-BR-7958                  TCGA-BR-7959 
"DEL PEAK 16(6Q27) WILD-TYPE" "DEL PEAK 16(6Q27) WILD-TYPE" 
                 TCGA-BR-8059                  TCGA-BR-8060 
"DEL PEAK 16(6Q27) WILD-TYPE" "DEL PEAK 16(6Q27) WILD-TYPE" 
                 TCGA-BR-8077                  TCGA-BR-8078 
"DEL PEAK 16(6Q27) WILD-TYPE" "DEL PEAK 16(6Q27) WILD-TYPE" 
                 TCGA-BR-8080                  TCGA-BR-8081 
"DEL PEAK 16(6Q27) WILD-TYPE" "DEL PEAK 16(6Q27) WILD-TYPE" 
                 TCGA-BR-8284                  TCGA-BR-8285 
"DEL PEAK 16(6Q27) WILD-TYPE" "DEL PEAK 16(6Q27) WILD-TYPE" 
                 TCGA-BR-8286                  TCGA-BR-8289 
"DEL PEAK 16(6Q27) WILD-TYPE" "DEL PEAK 16(6Q27) WILD-TYPE" 
                 TCGA-BR-8291                  TCGA-BR-8295 
"DEL PEAK 16(6Q27) WILD-TYPE" "DEL PEAK 16(6Q27) WILD-TYPE" 
                 TCGA-BR-8296                  TCGA-BR-8297 
"DEL PEAK 16(6Q27) WILD-TYPE" "DEL PEAK 16(6Q27) WILD-TYPE" 
                 TCGA-CD-5798                  TCGA-CD-5799 
"DEL PEAK 16(6Q27) WILD-TYPE" "DEL PEAK 16(6Q27) WILD-TYPE" 
                 TCGA-CD-5800                  TCGA-CD-5801 
  "DEL PEAK 16(6Q27) MUTATED" "DEL PEAK 16(6Q27) WILD-TYPE" 
                 TCGA-CD-5802                  TCGA-CD-5803 
"DEL PEAK 16(6Q27) WILD-TYPE"   "DEL PEAK 16(6Q27) MUTATED" 
                 TCGA-CG-4300                  TCGA-CG-4301 
"DEL PEAK 16(6Q27) WILD-TYPE"   "DEL PEAK 16(6Q27) MUTATED" 
                 TCGA-CG-4304                  TCGA-CG-4305 
"DEL PEAK 16(6Q27) WILD-TYPE" "DEL PEAK 16(6Q27) WILD-TYPE" 
                 TCGA-CG-4306                  TCGA-CG-4436 
"DEL PEAK 16(6Q27) WILD-TYPE" "DEL PEAK 16(6Q27) WILD-TYPE" 
                 TCGA-CG-4437                  TCGA-CG-4438 
  "DEL PEAK 16(6Q27) MUTATED" "DEL PEAK 16(6Q27) WILD-TYPE" 
                 TCGA-CG-4440                  TCGA-CG-4441 
  "DEL PEAK 16(6Q27) MUTATED" "DEL PEAK 16(6Q27) WILD-TYPE" 
                 TCGA-CG-4443                  TCGA-CG-4444 
  "DEL PEAK 16(6Q27) MUTATED" "DEL PEAK 16(6Q27) WILD-TYPE" 
                 TCGA-CG-4449                  TCGA-CG-4455 
"DEL PEAK 16(6Q27) WILD-TYPE"   "DEL PEAK 16(6Q27) MUTATED" 
                 TCGA-CG-4460                  TCGA-CG-4462 
"DEL PEAK 16(6Q27) WILD-TYPE" "DEL PEAK 16(6Q27) WILD-TYPE" 
                 TCGA-CG-4465                  TCGA-CG-4466 
"DEL PEAK 16(6Q27) WILD-TYPE" "DEL PEAK 16(6Q27) WILD-TYPE" 
                 TCGA-CG-4469                  TCGA-CG-4472 
"DEL PEAK 16(6Q27) WILD-TYPE"   "DEL PEAK 16(6Q27) MUTATED" 
                 TCGA-CG-4474                  TCGA-CG-4477 
"DEL PEAK 16(6Q27) WILD-TYPE" "DEL PEAK 16(6Q27) WILD-TYPE" 
                 TCGA-CG-5716                  TCGA-CG-5717 
"DEL PEAK 16(6Q27) WILD-TYPE"   "DEL PEAK 16(6Q27) MUTATED" 
                 TCGA-CG-5718                  TCGA-CG-5719 
"DEL PEAK 16(6Q27) WILD-TYPE"   "DEL PEAK 16(6Q27) MUTATED" 
                 TCGA-CG-5720                  TCGA-CG-5721 
"DEL PEAK 16(6Q27) WILD-TYPE" "DEL PEAK 16(6Q27) WILD-TYPE" 
                 TCGA-CG-5722                  TCGA-CG-5723 
"DEL PEAK 16(6Q27) WILD-TYPE" "DEL PEAK 16(6Q27) WILD-TYPE" 
                 TCGA-CG-5724                  TCGA-CG-5725 
  "DEL PEAK 16(6Q27) MUTATED"   "DEL PEAK 16(6Q27) MUTATED" 
                 TCGA-CG-5726                  TCGA-CG-5727 
"DEL PEAK 16(6Q27) WILD-TYPE" "DEL PEAK 16(6Q27) WILD-TYPE" 
                 TCGA-CG-5728                  TCGA-CG-5730 
"DEL PEAK 16(6Q27) WILD-TYPE" "DEL PEAK 16(6Q27) WILD-TYPE" 
                 TCGA-CG-5732                  TCGA-CG-5733 
  "DEL PEAK 16(6Q27) MUTATED" "DEL PEAK 16(6Q27) WILD-TYPE" 
                 TCGA-CG-5734                  TCGA-D7-5577 
"DEL PEAK 16(6Q27) WILD-TYPE" "DEL PEAK 16(6Q27) WILD-TYPE" 
                 TCGA-D7-5578                  TCGA-D7-5579 
  "DEL PEAK 16(6Q27) MUTATED" "DEL PEAK 16(6Q27) WILD-TYPE" 
                 TCGA-D7-6518                  TCGA-D7-6519 
"DEL PEAK 16(6Q27) WILD-TYPE"   "DEL PEAK 16(6Q27) MUTATED" 
                 TCGA-D7-6520                  TCGA-D7-6521 
  "DEL PEAK 16(6Q27) MUTATED"   "DEL PEAK 16(6Q27) MUTATED" 
                 TCGA-D7-6522                  TCGA-D7-6524 
"DEL PEAK 16(6Q27) WILD-TYPE" "DEL PEAK 16(6Q27) WILD-TYPE" 
                 TCGA-D7-6525                  TCGA-D7-6526 
  "DEL PEAK 16(6Q27) MUTATED"   "DEL PEAK 16(6Q27) MUTATED" 
                 TCGA-D7-6527                  TCGA-D7-6528 
"DEL PEAK 16(6Q27) WILD-TYPE" "DEL PEAK 16(6Q27) WILD-TYPE" 
                 TCGA-D7-6815                  TCGA-D7-6817 
"DEL PEAK 16(6Q27) WILD-TYPE" "DEL PEAK 16(6Q27) WILD-TYPE" 
                 TCGA-D7-6818                  TCGA-D7-6820 
"DEL PEAK 16(6Q27) WILD-TYPE" "DEL PEAK 16(6Q27) WILD-TYPE" 
                 TCGA-D7-6822                  TCGA-EQ-5647 
"DEL PEAK 16(6Q27) WILD-TYPE" "DEL PEAK 16(6Q27) WILD-TYPE" 
                 TCGA-EQ-8122                  TCGA-F1-6177 
"DEL PEAK 16(6Q27) WILD-TYPE" "DEL PEAK 16(6Q27) WILD-TYPE" 
                 TCGA-F1-6874                  TCGA-F1-6875 
"DEL PEAK 16(6Q27) WILD-TYPE" "DEL PEAK 16(6Q27) WILD-TYPE" 
                 TCGA-FP-7735                  TCGA-FP-7829 
"DEL PEAK 16(6Q27) WILD-TYPE" "DEL PEAK 16(6Q27) WILD-TYPE" 
                 TCGA-FP-7916                  TCGA-FP-7998 
"DEL PEAK 16(6Q27) WILD-TYPE" "DEL PEAK 16(6Q27) WILD-TYPE" 
                 TCGA-HJ-7597                  TCGA-IN-7806 
  "DEL PEAK 16(6Q27) MUTATED" "DEL PEAK 16(6Q27) WILD-TYPE" 
                 TCGA-IN-7808                  TCGA-IP-7968 
"DEL PEAK 16(6Q27) WILD-TYPE" "DEL PEAK 16(6Q27) WILD-TYPE" 
                 TCGA-B7-5816                  TCGA-B7-5818 
"DEL PEAK 16(6Q27) WILD-TYPE" "DEL PEAK 16(6Q27) WILD-TYPE" 
                 TCGA-BR-6452                  TCGA-BR-6455 
"DEL PEAK 16(6Q27) WILD-TYPE" "DEL PEAK 16(6Q27) WILD-TYPE" 
                 TCGA-BR-6457                  TCGA-BR-6458 
"DEL PEAK 16(6Q27) WILD-TYPE"   "DEL PEAK 16(6Q27) MUTATED" 
                 TCGA-BR-6563                  TCGA-BR-6564 
"DEL PEAK 16(6Q27) WILD-TYPE" "DEL PEAK 16(6Q27) WILD-TYPE" 
                 TCGA-BR-6565                  TCGA-BR-6566 
  "DEL PEAK 16(6Q27) MUTATED" "DEL PEAK 16(6Q27) WILD-TYPE" 
                 TCGA-BR-6705                  TCGA-BR-6706 
"DEL PEAK 16(6Q27) WILD-TYPE" "DEL PEAK 16(6Q27) WILD-TYPE" 
                 TCGA-BR-6707                  TCGA-BR-6709 
"DEL PEAK 16(6Q27) WILD-TYPE"   "DEL PEAK 16(6Q27) MUTATED" 
                 TCGA-BR-6710                  TCGA-BR-6801 
"DEL PEAK 16(6Q27) WILD-TYPE" "DEL PEAK 16(6Q27) WILD-TYPE" 
                 TCGA-BR-6802                  TCGA-BR-6803 
"DEL PEAK 16(6Q27) WILD-TYPE" "DEL PEAK 16(6Q27) WILD-TYPE" 
                 TCGA-BR-6852                  TCGA-BR-7196 
"DEL PEAK 16(6Q27) WILD-TYPE" "DEL PEAK 16(6Q27) WILD-TYPE" 
                 TCGA-BR-7197                  TCGA-BR-7703 
"DEL PEAK 16(6Q27) WILD-TYPE" "DEL PEAK 16(6Q27) WILD-TYPE" 
                 TCGA-BR-7704                  TCGA-BR-7707 
"DEL PEAK 16(6Q27) WILD-TYPE" "DEL PEAK 16(6Q27) WILD-TYPE" 
                 TCGA-BR-7715                  TCGA-BR-7716 
"DEL PEAK 16(6Q27) WILD-TYPE"   "DEL PEAK 16(6Q27) MUTATED" 
                 TCGA-BR-7717                  TCGA-BR-7722 
"DEL PEAK 16(6Q27) WILD-TYPE"   "DEL PEAK 16(6Q27) MUTATED" 
                 TCGA-BR-7723                  TCGA-BR-7851 
  "DEL PEAK 16(6Q27) MUTATED" "DEL PEAK 16(6Q27) WILD-TYPE" 
                 TCGA-BR-7901                  TCGA-BR-7957 
"DEL PEAK 16(6Q27) WILD-TYPE" "DEL PEAK 16(6Q27) WILD-TYPE" 
                 TCGA-BR-7958                  TCGA-BR-7959 
"DEL PEAK 16(6Q27) WILD-TYPE" "DEL PEAK 16(6Q27) WILD-TYPE" 
                 TCGA-BR-8059                  TCGA-BR-8060 
"DEL PEAK 16(6Q27) WILD-TYPE" "DEL PEAK 16(6Q27) WILD-TYPE" 
                 TCGA-BR-8077                  TCGA-BR-8078 
"DEL PEAK 16(6Q27) WILD-TYPE" "DEL PEAK 16(6Q27) WILD-TYPE" 
                 TCGA-BR-8080                  TCGA-BR-8081 
"DEL PEAK 16(6Q27) WILD-TYPE" "DEL PEAK 16(6Q27) WILD-TYPE" 
                 TCGA-BR-8284                  TCGA-BR-8285 
"DEL PEAK 16(6Q27) WILD-TYPE" "DEL PEAK 16(6Q27) WILD-TYPE" 
                 TCGA-BR-8286                  TCGA-BR-8289 
"DEL PEAK 16(6Q27) WILD-TYPE" "DEL PEAK 16(6Q27) WILD-TYPE" 
                 TCGA-BR-8291                  TCGA-BR-8295 
"DEL PEAK 16(6Q27) WILD-TYPE" "DEL PEAK 16(6Q27) WILD-TYPE" 
                 TCGA-BR-8296                  TCGA-BR-8297 
"DEL PEAK 16(6Q27) WILD-TYPE" "DEL PEAK 16(6Q27) WILD-TYPE" 
                 TCGA-CD-5798                  TCGA-CD-5799 
"DEL PEAK 16(6Q27) WILD-TYPE" "DEL PEAK 16(6Q27) WILD-TYPE" 
                 TCGA-CD-5800                  TCGA-CD-5801 
  "DEL PEAK 16(6Q27) MUTATED" "DEL PEAK 16(6Q27) WILD-TYPE" 
                 TCGA-CD-5802                  TCGA-CD-5803 
"DEL PEAK 16(6Q27) WILD-TYPE"   "DEL PEAK 16(6Q27) MUTATED" 
                 TCGA-CG-4300                  TCGA-CG-4301 
"DEL PEAK 16(6Q27) WILD-TYPE"   "DEL PEAK 16(6Q27) MUTATED" 
                 TCGA-CG-4304                  TCGA-CG-4305 
"DEL PEAK 16(6Q27) WILD-TYPE" "DEL PEAK 16(6Q27) WILD-TYPE" 
                 TCGA-CG-4306                  TCGA-CG-4436 
"DEL PEAK 16(6Q27) WILD-TYPE" "DEL PEAK 16(6Q27) WILD-TYPE" 
                 TCGA-CG-4437                  TCGA-CG-4438 
  "DEL PEAK 16(6Q27) MUTATED" "DEL PEAK 16(6Q27) WILD-TYPE" 
                 TCGA-CG-4440                  TCGA-CG-4441 
  "DEL PEAK 16(6Q27) MUTATED" "DEL PEAK 16(6Q27) WILD-TYPE" 
                 TCGA-CG-4443                  TCGA-CG-4444 
  "DEL PEAK 16(6Q27) MUTATED" "DEL PEAK 16(6Q27) WILD-TYPE" 
                 TCGA-CG-4449                  TCGA-CG-4455 
"DEL PEAK 16(6Q27) WILD-TYPE"   "DEL PEAK 16(6Q27) MUTATED" 
                 TCGA-CG-4460                  TCGA-CG-4462 
"DEL PEAK 16(6Q27) WILD-TYPE" "DEL PEAK 16(6Q27) WILD-TYPE" 
                 TCGA-CG-4465                  TCGA-CG-4466 
"DEL PEAK 16(6Q27) WILD-TYPE" "DEL PEAK 16(6Q27) WILD-TYPE" 
                 TCGA-CG-4469                  TCGA-CG-4472 
"DEL PEAK 16(6Q27) WILD-TYPE"   "DEL PEAK 16(6Q27) MUTATED" 
                 TCGA-CG-4474                  TCGA-CG-4477 
"DEL PEAK 16(6Q27) WILD-TYPE" "DEL PEAK 16(6Q27) WILD-TYPE" 
                 TCGA-CG-5716                  TCGA-CG-5717 
"DEL PEAK 16(6Q27) WILD-TYPE"   "DEL PEAK 16(6Q27) MUTATED" 
                 TCGA-CG-5718                  TCGA-CG-5719 
"DEL PEAK 16(6Q27) WILD-TYPE"   "DEL PEAK 16(6Q27) MUTATED" 
                 TCGA-CG-5720                  TCGA-CG-5721 
"DEL PEAK 16(6Q27) WILD-TYPE" "DEL PEAK 16(6Q27) WILD-TYPE" 
                 TCGA-CG-5722                  TCGA-CG-5723 
"DEL PEAK 16(6Q27) WILD-TYPE" "DEL PEAK 16(6Q27) WILD-TYPE" 
                 TCGA-CG-5724                  TCGA-CG-5725 
  "DEL PEAK 16(6Q27) MUTATED"   "DEL PEAK 16(6Q27) MUTATED" 
                 TCGA-CG-5726                  TCGA-CG-5727 
"DEL PEAK 16(6Q27) WILD-TYPE" "DEL PEAK 16(6Q27) WILD-TYPE" 
                 TCGA-CG-5728                  TCGA-CG-5730 
"DEL PEAK 16(6Q27) WILD-TYPE" "DEL PEAK 16(6Q27) WILD-TYPE" 
                 TCGA-CG-5732                  TCGA-CG-5733 
  "DEL PEAK 16(6Q27) MUTATED" "DEL PEAK 16(6Q27) WILD-TYPE" 
                 TCGA-CG-5734                  TCGA-D7-5577 
"DEL PEAK 16(6Q27) WILD-TYPE" "DEL PEAK 16(6Q27) WILD-TYPE" 
                 TCGA-D7-5578                  TCGA-D7-5579 
  "DEL PEAK 16(6Q27) MUTATED" "DEL PEAK 16(6Q27) WILD-TYPE" 
                 TCGA-D7-6518                  TCGA-D7-6519 
"DEL PEAK 16(6Q27) WILD-TYPE"   "DEL PEAK 16(6Q27) MUTATED" 
                 TCGA-D7-6520                  TCGA-D7-6521 
  "DEL PEAK 16(6Q27) MUTATED"   "DEL PEAK 16(6Q27) MUTATED" 
                 TCGA-D7-6522                  TCGA-D7-6524 
"DEL PEAK 16(6Q27) WILD-TYPE" "DEL PEAK 16(6Q27) WILD-TYPE" 
                 TCGA-D7-6525                  TCGA-D7-6526 
  "DEL PEAK 16(6Q27) MUTATED"   "DEL PEAK 16(6Q27) MUTATED" 
                 TCGA-D7-6527                  TCGA-D7-6528 
"DEL PEAK 16(6Q27) WILD-TYPE" "DEL PEAK 16(6Q27) WILD-TYPE" 
                 TCGA-D7-6815                  TCGA-D7-6817 
"DEL PEAK 16(6Q27) WILD-TYPE" "DEL PEAK 16(6Q27) WILD-TYPE" 
                 TCGA-D7-6818                  TCGA-D7-6820 
"DEL PEAK 16(6Q27) WILD-TYPE" "DEL PEAK 16(6Q27) WILD-TYPE" 
                 TCGA-D7-6822                  TCGA-EQ-5647 
"DEL PEAK 16(6Q27) WILD-TYPE" "DEL PEAK 16(6Q27) WILD-TYPE" 
                 TCGA-EQ-8122                  TCGA-F1-6177 
"DEL PEAK 16(6Q27) WILD-TYPE" "DEL PEAK 16(6Q27) WILD-TYPE" 
                 TCGA-F1-6874                  TCGA-F1-6875 
"DEL PEAK 16(6Q27) WILD-TYPE" "DEL PEAK 16(6Q27) WILD-TYPE" 
                 TCGA-FP-7735                  TCGA-FP-7829 
"DEL PEAK 16(6Q27) WILD-TYPE" "DEL PEAK 16(6Q27) WILD-TYPE" 
                 TCGA-FP-7916                  TCGA-FP-7998 
"DEL PEAK 16(6Q27) WILD-TYPE" "DEL PEAK 16(6Q27) WILD-TYPE" 
                 TCGA-HJ-7597                  TCGA-IN-7806 
  "DEL PEAK 16(6Q27) MUTATED" "DEL PEAK 16(6Q27) WILD-TYPE" 
                 TCGA-IN-7808                  TCGA-IP-7968 
"DEL PEAK 16(6Q27) WILD-TYPE" "DEL PEAK 16(6Q27) WILD-TYPE" 
                 TCGA-B7-5816                  TCGA-B7-5818 
"DEL PEAK 16(6Q27) WILD-TYPE" "DEL PEAK 16(6Q27) WILD-TYPE" 
                 TCGA-BR-6452                  TCGA-BR-6455 
"DEL PEAK 16(6Q27) WILD-TYPE" "DEL PEAK 16(6Q27) WILD-TYPE" 
                 TCGA-BR-6457                  TCGA-BR-6458 
"DEL PEAK 16(6Q27) WILD-TYPE"   "DEL PEAK 16(6Q27) MUTATED" 
                 TCGA-BR-6563                  TCGA-BR-6564 
"DEL PEAK 16(6Q27) WILD-TYPE" "DEL PEAK 16(6Q27) WILD-TYPE" 
                 TCGA-BR-6565                  TCGA-BR-6566 
  "DEL PEAK 16(6Q27) MUTATED" "DEL PEAK 16(6Q27) WILD-TYPE" 
                 TCGA-BR-6705                  TCGA-BR-6706 
"DEL PEAK 16(6Q27) WILD-TYPE" "DEL PEAK 16(6Q27) WILD-TYPE" 
                 TCGA-BR-6707                  TCGA-BR-6709 
"DEL PEAK 16(6Q27) WILD-TYPE"   "DEL PEAK 16(6Q27) MUTATED" 
                 TCGA-BR-6710                  TCGA-BR-6801 
"DEL PEAK 16(6Q27) WILD-TYPE" "DEL PEAK 16(6Q27) WILD-TYPE" 
                 TCGA-BR-6802                  TCGA-BR-6803 
"DEL PEAK 16(6Q27) WILD-TYPE" "DEL PEAK 16(6Q27) WILD-TYPE" 
                 TCGA-BR-6852                  TCGA-BR-7196 
"DEL PEAK 16(6Q27) WILD-TYPE" "DEL PEAK 16(6Q27) WILD-TYPE" 
                 TCGA-BR-7197                  TCGA-BR-7703 
"DEL PEAK 16(6Q27) WILD-TYPE" "DEL PEAK 16(6Q27) WILD-TYPE" 
                 TCGA-BR-7704                  TCGA-BR-7707 
"DEL PEAK 16(6Q27) WILD-TYPE" "DEL PEAK 16(6Q27) WILD-TYPE" 
                 TCGA-BR-7715                  TCGA-BR-7716 
"DEL PEAK 16(6Q27) WILD-TYPE"   "DEL PEAK 16(6Q27) MUTATED" 
                 TCGA-BR-7717                  TCGA-BR-7722 
"DEL PEAK 16(6Q27) WILD-TYPE"   "DEL PEAK 16(6Q27) MUTATED" 
                 TCGA-BR-7723                  TCGA-BR-7851 
  "DEL PEAK 16(6Q27) MUTATED" "DEL PEAK 16(6Q27) WILD-TYPE" 
                 TCGA-BR-7901                  TCGA-BR-7957 
"DEL PEAK 16(6Q27) WILD-TYPE" "DEL PEAK 16(6Q27) WILD-TYPE" 
                 TCGA-BR-7958                  TCGA-BR-7959 
"DEL PEAK 16(6Q27) WILD-TYPE" "DEL PEAK 16(6Q27) WILD-TYPE" 
                 TCGA-BR-8059                  TCGA-BR-8060 
"DEL PEAK 16(6Q27) WILD-TYPE" "DEL PEAK 16(6Q27) WILD-TYPE" 
                 TCGA-BR-8077                  TCGA-BR-8078 
"DEL PEAK 16(6Q27) WILD-TYPE" "DEL PEAK 16(6Q27) WILD-TYPE" 
                 TCGA-BR-8080                  TCGA-BR-8081 
"DEL PEAK 16(6Q27) WILD-TYPE" "DEL PEAK 16(6Q27) WILD-TYPE" 
                 TCGA-BR-8284                  TCGA-BR-8285 
"DEL PEAK 16(6Q27) WILD-TYPE" "DEL PEAK 16(6Q27) WILD-TYPE" 
                 TCGA-BR-8286                  TCGA-BR-8289 
"DEL PEAK 16(6Q27) WILD-TYPE" "DEL PEAK 16(6Q27) WILD-TYPE" 
                 TCGA-BR-8291                  TCGA-BR-8295 
"DEL PEAK 16(6Q27) WILD-TYPE" "DEL PEAK 16(6Q27) WILD-TYPE" 
                 TCGA-BR-8296                  TCGA-BR-8297 
"DEL PEAK 16(6Q27) WILD-TYPE" "DEL PEAK 16(6Q27) WILD-TYPE" 
                 TCGA-CD-5798                  TCGA-CD-5799 
"DEL PEAK 16(6Q27) WILD-TYPE" "DEL PEAK 16(6Q27) WILD-TYPE" 
                 TCGA-CD-5800                  TCGA-CD-5801 
  "DEL PEAK 16(6Q27) MUTATED" "DEL PEAK 16(6Q27) WILD-TYPE" 
                 TCGA-CD-5802                  TCGA-CD-5803 
"DEL PEAK 16(6Q27) WILD-TYPE"   "DEL PEAK 16(6Q27) MUTATED" 
                 TCGA-CG-4300                  TCGA-CG-4301 
"DEL PEAK 16(6Q27) WILD-TYPE"   "DEL PEAK 16(6Q27) MUTATED" 
                 TCGA-CG-4304                  TCGA-CG-4305 
"DEL PEAK 16(6Q27) WILD-TYPE" "DEL PEAK 16(6Q27) WILD-TYPE" 
                 TCGA-CG-4306                  TCGA-CG-4436 
"DEL PEAK 16(6Q27) WILD-TYPE" "DEL PEAK 16(6Q27) WILD-TYPE" 
                 TCGA-CG-4437                  TCGA-CG-4438 
  "DEL PEAK 16(6Q27) MUTATED" "DEL PEAK 16(6Q27) WILD-TYPE" 
                 TCGA-CG-4440                  TCGA-CG-4441 
  "DEL PEAK 16(6Q27) MUTATED" "DEL PEAK 16(6Q27) WILD-TYPE" 
                 TCGA-CG-4443                  TCGA-CG-4444 
  "DEL PEAK 16(6Q27) MUTATED" "DEL PEAK 16(6Q27) WILD-TYPE" 
                 TCGA-CG-4449                  TCGA-CG-4455 
"DEL PEAK 16(6Q27) WILD-TYPE"   "DEL PEAK 16(6Q27) MUTATED" 
                 TCGA-CG-4460                  TCGA-CG-4462 
"DEL PEAK 16(6Q27) WILD-TYPE" "DEL PEAK 16(6Q27) WILD-TYPE" 
                 TCGA-CG-4465                  TCGA-CG-4466 
"DEL PEAK 16(6Q27) WILD-TYPE" "DEL PEAK 16(6Q27) WILD-TYPE" 
                 TCGA-CG-4469                  TCGA-CG-4472 
"DEL PEAK 16(6Q27) WILD-TYPE"   "DEL PEAK 16(6Q27) MUTATED" 
                 TCGA-CG-4474                  TCGA-CG-4477 
"DEL PEAK 16(6Q27) WILD-TYPE" "DEL PEAK 16(6Q27) WILD-TYPE" 
                 TCGA-CG-5716                  TCGA-CG-5717 
"DEL PEAK 16(6Q27) WILD-TYPE"   "DEL PEAK 16(6Q27) MUTATED" 
                 TCGA-CG-5718                  TCGA-CG-5719 
"DEL PEAK 16(6Q27) WILD-TYPE"   "DEL PEAK 16(6Q27) MUTATED" 
                 TCGA-CG-5720                  TCGA-CG-5721 
"DEL PEAK 16(6Q27) WILD-TYPE" "DEL PEAK 16(6Q27) WILD-TYPE" 
                 TCGA-CG-5722                  TCGA-CG-5723 
"DEL PEAK 16(6Q27) WILD-TYPE" "DEL PEAK 16(6Q27) WILD-TYPE" 
                 TCGA-CG-5724                  TCGA-CG-5725 
  "DEL PEAK 16(6Q27) MUTATED"   "DEL PEAK 16(6Q27) MUTATED" 
                 TCGA-CG-5726                  TCGA-CG-5727 
"DEL PEAK 16(6Q27) WILD-TYPE" "DEL PEAK 16(6Q27) WILD-TYPE" 
                 TCGA-CG-5728                  TCGA-CG-5730 
"DEL PEAK 16(6Q27) WILD-TYPE" "DEL PEAK 16(6Q27) WILD-TYPE" 
                 TCGA-CG-5732                  TCGA-CG-5733 
  "DEL PEAK 16(6Q27) MUTATED" "DEL PEAK 16(6Q27) WILD-TYPE" 
                 TCGA-CG-5734                  TCGA-D7-5577 
"DEL PEAK 16(6Q27) WILD-TYPE" "DEL PEAK 16(6Q27) WILD-TYPE" 
                 TCGA-D7-5578                  TCGA-D7-5579 
  "DEL PEAK 16(6Q27) MUTATED" "DEL PEAK 16(6Q27) WILD-TYPE" 
                 TCGA-D7-6518                  TCGA-D7-6519 
"DEL PEAK 16(6Q27) WILD-TYPE"   "DEL PEAK 16(6Q27) MUTATED" 
                 TCGA-D7-6520                  TCGA-D7-6521 
  "DEL PEAK 16(6Q27) MUTATED"   "DEL PEAK 16(6Q27) MUTATED" 
                 TCGA-D7-6522                  TCGA-D7-6524 
"DEL PEAK 16(6Q27) WILD-TYPE" "DEL PEAK 16(6Q27) WILD-TYPE" 
                 TCGA-D7-6525                  TCGA-D7-6526 
  "DEL PEAK 16(6Q27) MUTATED"   "DEL PEAK 16(6Q27) MUTATED" 
                 TCGA-D7-6527                  TCGA-D7-6528 
"DEL PEAK 16(6Q27) WILD-TYPE" "DEL PEAK 16(6Q27) WILD-TYPE" 
                 TCGA-D7-6815                  TCGA-D7-6817 
"DEL PEAK 16(6Q27) WILD-TYPE" "DEL PEAK 16(6Q27) WILD-TYPE" 
                 TCGA-D7-6818                  TCGA-D7-6820 
"DEL PEAK 16(6Q27) WILD-TYPE" "DEL PEAK 16(6Q27) WILD-TYPE" 
                 TCGA-D7-6822                  TCGA-EQ-5647 
"DEL PEAK 16(6Q27) WILD-TYPE" "DEL PEAK 16(6Q27) WILD-TYPE" 
                 TCGA-EQ-8122                  TCGA-F1-6177 
"DEL PEAK 16(6Q27) WILD-TYPE" "DEL PEAK 16(6Q27) WILD-TYPE" 
                 TCGA-F1-6874                  TCGA-F1-6875 
"DEL PEAK 16(6Q27) WILD-TYPE" "DEL PEAK 16(6Q27) WILD-TYPE" 
                 TCGA-FP-7735                  TCGA-FP-7829 
"DEL PEAK 16(6Q27) WILD-TYPE" "DEL PEAK 16(6Q27) WILD-TYPE" 
                 TCGA-FP-7916                  TCGA-FP-7998 
"DEL PEAK 16(6Q27) WILD-TYPE" "DEL PEAK 16(6Q27) WILD-TYPE" 
                 TCGA-HJ-7597                  TCGA-IN-7806 
  "DEL PEAK 16(6Q27) MUTATED" "DEL PEAK 16(6Q27) WILD-TYPE" 
                 TCGA-IN-7808                  TCGA-IP-7968 
"DEL PEAK 16(6Q27) WILD-TYPE" "DEL PEAK 16(6Q27) WILD-TYPE" 
[1] "hr=" "1.3"
D42V2, continuous
D42V3, binary
[1] "tbl2"
                             cls
clus                          [,1] [,2]
  DEL PEAK 16(6Q27) MUTATED     13   21
  DEL PEAK 16(6Q27) WILD-TYPE   52   75
        clus
vv       DEL PEAK 16(6Q27) MUTATED DEL PEAK 16(6Q27) WILD-TYPE
  FEMALE                        13                          52
  MALE                          21                          75
D42V4, multiclass
D42V5, multiclass
    clus
vv   DEL PEAK 16(6Q27) MUTATED DEL PEAK 16(6Q27) WILD-TYPE
  T1                         1                           5
  T2                        13                          40
  T3                        14                          45
  T4                         5                          28
D42V6, multiclass
    clus
vv   DEL PEAK 16(6Q27) MUTATED DEL PEAK 16(6Q27) WILD-TYPE
  N0                         8                          42
  N1                        12                          45
  N2                         7                          17
  N3                         5                          14
D42V7, multiclass
    clus
vv   DEL PEAK 16(6Q27) MUTATED DEL PEAK 16(6Q27) WILD-TYPE
  M0                        27                         105
  M1                         4                          14
  MX                         3                           8
D42V8, multiclass
     clus
vv    DEL PEAK 16(6Q27) MUTATED DEL PEAK 16(6Q27) WILD-TYPE
  I                           4                          21
  II                          9                          34
  III                        10                          38
  IV                          8                          21
D42V9, binary
[1] "tbl2"
                             cls
clus                          [,1] [,2]
  DEL PEAK 16(6Q27) MUTATED     32    2
  DEL PEAK 16(6Q27) WILD-TYPE  124    3
     clus
vv    DEL PEAK 16(6Q27) MUTATED DEL PEAK 16(6Q27) WILD-TYPE
  NO                          2                           3
  YES                        32                         124

Clustering(43) Variable = Del Peak 17(7q31.1) mutation analysis
D43V1, survival
                   TCGA-B7-5816                    TCGA-B7-5818 
"DEL PEAK 17(7Q31.1) WILD-TYPE" "DEL PEAK 17(7Q31.1) WILD-TYPE" 
                   TCGA-BR-6452                    TCGA-BR-6455 
"DEL PEAK 17(7Q31.1) WILD-TYPE" "DEL PEAK 17(7Q31.1) WILD-TYPE" 
                   TCGA-BR-6457                    TCGA-BR-6458 
"DEL PEAK 17(7Q31.1) WILD-TYPE" "DEL PEAK 17(7Q31.1) WILD-TYPE" 
                   TCGA-BR-6563                    TCGA-BR-6564 
"DEL PEAK 17(7Q31.1) WILD-TYPE"   "DEL PEAK 17(7Q31.1) MUTATED" 
                   TCGA-BR-6565                    TCGA-BR-6566 
"DEL PEAK 17(7Q31.1) WILD-TYPE" "DEL PEAK 17(7Q31.1) WILD-TYPE" 
                   TCGA-BR-6705                    TCGA-BR-6706 
"DEL PEAK 17(7Q31.1) WILD-TYPE"   "DEL PEAK 17(7Q31.1) MUTATED" 
                   TCGA-BR-6707                    TCGA-BR-6709 
"DEL PEAK 17(7Q31.1) WILD-TYPE" "DEL PEAK 17(7Q31.1) WILD-TYPE" 
                   TCGA-BR-6710                    TCGA-BR-6801 
"DEL PEAK 17(7Q31.1) WILD-TYPE" "DEL PEAK 17(7Q31.1) WILD-TYPE" 
                   TCGA-BR-6802                    TCGA-BR-6803 
"DEL PEAK 17(7Q31.1) WILD-TYPE" "DEL PEAK 17(7Q31.1) WILD-TYPE" 
                   TCGA-BR-6852                    TCGA-BR-7196 
"DEL PEAK 17(7Q31.1) WILD-TYPE" "DEL PEAK 17(7Q31.1) WILD-TYPE" 
                   TCGA-BR-7197                    TCGA-BR-7703 
"DEL PEAK 17(7Q31.1) WILD-TYPE" "DEL PEAK 17(7Q31.1) WILD-TYPE" 
                   TCGA-BR-7704                    TCGA-BR-7707 
"DEL PEAK 17(7Q31.1) WILD-TYPE" "DEL PEAK 17(7Q31.1) WILD-TYPE" 
                   TCGA-BR-7715                    TCGA-BR-7716 
"DEL PEAK 17(7Q31.1) WILD-TYPE" "DEL PEAK 17(7Q31.1) WILD-TYPE" 
                   TCGA-BR-7717                    TCGA-BR-7722 
"DEL PEAK 17(7Q31.1) WILD-TYPE" "DEL PEAK 17(7Q31.1) WILD-TYPE" 
                   TCGA-BR-7723                    TCGA-BR-7851 
  "DEL PEAK 17(7Q31.1) MUTATED" "DEL PEAK 17(7Q31.1) WILD-TYPE" 
                   TCGA-BR-7901                    TCGA-BR-7957 
"DEL PEAK 17(7Q31.1) WILD-TYPE" "DEL PEAK 17(7Q31.1) WILD-TYPE" 
                   TCGA-BR-7958                    TCGA-BR-7959 
"DEL PEAK 17(7Q31.1) WILD-TYPE" "DEL PEAK 17(7Q31.1) WILD-TYPE" 
                   TCGA-BR-8059                    TCGA-BR-8060 
"DEL PEAK 17(7Q31.1) WILD-TYPE" "DEL PEAK 17(7Q31.1) WILD-TYPE" 
                   TCGA-BR-8077                    TCGA-BR-8078 
"DEL PEAK 17(7Q31.1) WILD-TYPE" "DEL PEAK 17(7Q31.1) WILD-TYPE" 
                   TCGA-BR-8080                    TCGA-BR-8081 
"DEL PEAK 17(7Q31.1) WILD-TYPE" "DEL PEAK 17(7Q31.1) WILD-TYPE" 
                   TCGA-BR-8284                    TCGA-BR-8285 
"DEL PEAK 17(7Q31.1) WILD-TYPE" "DEL PEAK 17(7Q31.1) WILD-TYPE" 
                   TCGA-BR-8286                    TCGA-BR-8289 
"DEL PEAK 17(7Q31.1) WILD-TYPE" "DEL PEAK 17(7Q31.1) WILD-TYPE" 
                   TCGA-BR-8291                    TCGA-BR-8295 
"DEL PEAK 17(7Q31.1) WILD-TYPE" "DEL PEAK 17(7Q31.1) WILD-TYPE" 
                   TCGA-BR-8296                    TCGA-BR-8297 
"DEL PEAK 17(7Q31.1) WILD-TYPE" "DEL PEAK 17(7Q31.1) WILD-TYPE" 
                   TCGA-CD-5798                    TCGA-CD-5799 
"DEL PEAK 17(7Q31.1) WILD-TYPE" "DEL PEAK 17(7Q31.1) WILD-TYPE" 
                   TCGA-CD-5800                    TCGA-CD-5801 
"DEL PEAK 17(7Q31.1) WILD-TYPE" "DEL PEAK 17(7Q31.1) WILD-TYPE" 
                   TCGA-CD-5802                    TCGA-CD-5803 
"DEL PEAK 17(7Q31.1) WILD-TYPE" "DEL PEAK 17(7Q31.1) WILD-TYPE" 
                   TCGA-CG-4300                    TCGA-CG-4301 
"DEL PEAK 17(7Q31.1) WILD-TYPE"   "DEL PEAK 17(7Q31.1) MUTATED" 
                   TCGA-CG-4304                    TCGA-CG-4305 
"DEL PEAK 17(7Q31.1) WILD-TYPE" "DEL PEAK 17(7Q31.1) WILD-TYPE" 
                   TCGA-CG-4306                    TCGA-CG-4436 
"DEL PEAK 17(7Q31.1) WILD-TYPE" "DEL PEAK 17(7Q31.1) WILD-TYPE" 
                   TCGA-CG-4437                    TCGA-CG-4438 
  "DEL PEAK 17(7Q31.1) MUTATED"   "DEL PEAK 17(7Q31.1) MUTATED" 
                   TCGA-CG-4440                    TCGA-CG-4441 
"DEL PEAK 17(7Q31.1) WILD-TYPE" "DEL PEAK 17(7Q31.1) WILD-TYPE" 
                   TCGA-CG-4443                    TCGA-CG-4444 
"DEL PEAK 17(7Q31.1) WILD-TYPE" "DEL PEAK 17(7Q31.1) WILD-TYPE" 
                   TCGA-CG-4449                    TCGA-CG-4455 
  "DEL PEAK 17(7Q31.1) MUTATED"   "DEL PEAK 17(7Q31.1) MUTATED" 
                   TCGA-CG-4460                    TCGA-CG-4462 
"DEL PEAK 17(7Q31.1) WILD-TYPE" "DEL PEAK 17(7Q31.1) WILD-TYPE" 
                   TCGA-CG-4465                    TCGA-CG-4466 
"DEL PEAK 17(7Q31.1) WILD-TYPE" "DEL PEAK 17(7Q31.1) WILD-TYPE" 
                   TCGA-CG-4469                    TCGA-CG-4472 
"DEL PEAK 17(7Q31.1) WILD-TYPE"   "DEL PEAK 17(7Q31.1) MUTATED" 
                   TCGA-CG-4474                    TCGA-CG-4477 
"DEL PEAK 17(7Q31.1) WILD-TYPE" "DEL PEAK 17(7Q31.1) WILD-TYPE" 
                   TCGA-CG-5716                    TCGA-CG-5717 
"DEL PEAK 17(7Q31.1) WILD-TYPE" "DEL PEAK 17(7Q31.1) WILD-TYPE" 
                   TCGA-CG-5718                    TCGA-CG-5719 
"DEL PEAK 17(7Q31.1) WILD-TYPE" "DEL PEAK 17(7Q31.1) WILD-TYPE" 
                   TCGA-CG-5720                    TCGA-CG-5721 
"DEL PEAK 17(7Q31.1) WILD-TYPE" "DEL PEAK 17(7Q31.1) WILD-TYPE" 
                   TCGA-CG-5722                    TCGA-CG-5723 
"DEL PEAK 17(7Q31.1) WILD-TYPE" "DEL PEAK 17(7Q31.1) WILD-TYPE" 
                   TCGA-CG-5724                    TCGA-CG-5725 
"DEL PEAK 17(7Q31.1) WILD-TYPE" "DEL PEAK 17(7Q31.1) WILD-TYPE" 
                   TCGA-CG-5726                    TCGA-CG-5727 
"DEL PEAK 17(7Q31.1) WILD-TYPE" "DEL PEAK 17(7Q31.1) WILD-TYPE" 
                   TCGA-CG-5728                    TCGA-CG-5730 
"DEL PEAK 17(7Q31.1) WILD-TYPE" "DEL PEAK 17(7Q31.1) WILD-TYPE" 
                   TCGA-CG-5732                    TCGA-CG-5733 
"DEL PEAK 17(7Q31.1) WILD-TYPE" "DEL PEAK 17(7Q31.1) WILD-TYPE" 
                   TCGA-CG-5734                    TCGA-D7-5577 
"DEL PEAK 17(7Q31.1) WILD-TYPE" "DEL PEAK 17(7Q31.1) WILD-TYPE" 
                   TCGA-D7-5578                    TCGA-D7-5579 
"DEL PEAK 17(7Q31.1) WILD-TYPE" "DEL PEAK 17(7Q31.1) WILD-TYPE" 
                   TCGA-D7-6518                    TCGA-D7-6519 
"DEL PEAK 17(7Q31.1) WILD-TYPE" "DEL PEAK 17(7Q31.1) WILD-TYPE" 
                   TCGA-D7-6520                    TCGA-D7-6521 
"DEL PEAK 17(7Q31.1) WILD-TYPE" "DEL PEAK 17(7Q31.1) WILD-TYPE" 
                   TCGA-D7-6522                    TCGA-D7-6524 
"DEL PEAK 17(7Q31.1) WILD-TYPE" "DEL PEAK 17(7Q31.1) WILD-TYPE" 
                   TCGA-D7-6525                    TCGA-D7-6526 
"DEL PEAK 17(7Q31.1) WILD-TYPE" "DEL PEAK 17(7Q31.1) WILD-TYPE" 
                   TCGA-D7-6527                    TCGA-D7-6528 
"DEL PEAK 17(7Q31.1) WILD-TYPE" "DEL PEAK 17(7Q31.1) WILD-TYPE" 
                   TCGA-D7-6815                    TCGA-D7-6817 
  "DEL PEAK 17(7Q31.1) MUTATED" "DEL PEAK 17(7Q31.1) WILD-TYPE" 
                   TCGA-D7-6818                    TCGA-D7-6820 
"DEL PEAK 17(7Q31.1) WILD-TYPE"   "DEL PEAK 17(7Q31.1) MUTATED" 
                   TCGA-D7-6822                    TCGA-EQ-5647 
"DEL PEAK 17(7Q31.1) WILD-TYPE" "DEL PEAK 17(7Q31.1) WILD-TYPE" 
                   TCGA-EQ-8122                    TCGA-F1-6177 
  "DEL PEAK 17(7Q31.1) MUTATED" "DEL PEAK 17(7Q31.1) WILD-TYPE" 
                   TCGA-F1-6874                    TCGA-F1-6875 
"DEL PEAK 17(7Q31.1) WILD-TYPE"   "DEL PEAK 17(7Q31.1) MUTATED" 
                   TCGA-FP-7735                    TCGA-FP-7829 
"DEL PEAK 17(7Q31.1) WILD-TYPE"   "DEL PEAK 17(7Q31.1) MUTATED" 
                   TCGA-FP-7916                    TCGA-FP-7998 
"DEL PEAK 17(7Q31.1) WILD-TYPE" "DEL PEAK 17(7Q31.1) WILD-TYPE" 
                   TCGA-HJ-7597                    TCGA-IN-7806 
"DEL PEAK 17(7Q31.1) WILD-TYPE" "DEL PEAK 17(7Q31.1) WILD-TYPE" 
                   TCGA-IN-7808                    TCGA-IP-7968 
"DEL PEAK 17(7Q31.1) WILD-TYPE"   "DEL PEAK 17(7Q31.1) MUTATED" 
                   TCGA-B7-5816                    TCGA-B7-5818 
"DEL PEAK 17(7Q31.1) WILD-TYPE" "DEL PEAK 17(7Q31.1) WILD-TYPE" 
                   TCGA-BR-6452                    TCGA-BR-6455 
"DEL PEAK 17(7Q31.1) WILD-TYPE" "DEL PEAK 17(7Q31.1) WILD-TYPE" 
                   TCGA-BR-6457                    TCGA-BR-6458 
"DEL PEAK 17(7Q31.1) WILD-TYPE" "DEL PEAK 17(7Q31.1) WILD-TYPE" 
                   TCGA-BR-6563                    TCGA-BR-6564 
"DEL PEAK 17(7Q31.1) WILD-TYPE"   "DEL PEAK 17(7Q31.1) MUTATED" 
                   TCGA-BR-6565                    TCGA-BR-6566 
"DEL PEAK 17(7Q31.1) WILD-TYPE" "DEL PEAK 17(7Q31.1) WILD-TYPE" 
                   TCGA-BR-6705                    TCGA-BR-6706 
"DEL PEAK 17(7Q31.1) WILD-TYPE"   "DEL PEAK 17(7Q31.1) MUTATED" 
                   TCGA-BR-6707                    TCGA-BR-6709 
"DEL PEAK 17(7Q31.1) WILD-TYPE" "DEL PEAK 17(7Q31.1) WILD-TYPE" 
                   TCGA-BR-6710                    TCGA-BR-6801 
"DEL PEAK 17(7Q31.1) WILD-TYPE" "DEL PEAK 17(7Q31.1) WILD-TYPE" 
                   TCGA-BR-6802                    TCGA-BR-6803 
"DEL PEAK 17(7Q31.1) WILD-TYPE" "DEL PEAK 17(7Q31.1) WILD-TYPE" 
                   TCGA-BR-6852                    TCGA-BR-7196 
"DEL PEAK 17(7Q31.1) WILD-TYPE" "DEL PEAK 17(7Q31.1) WILD-TYPE" 
                   TCGA-BR-7197                    TCGA-BR-7703 
"DEL PEAK 17(7Q31.1) WILD-TYPE" "DEL PEAK 17(7Q31.1) WILD-TYPE" 
                   TCGA-BR-7704                    TCGA-BR-7707 
"DEL PEAK 17(7Q31.1) WILD-TYPE" "DEL PEAK 17(7Q31.1) WILD-TYPE" 
                   TCGA-BR-7715                    TCGA-BR-7716 
"DEL PEAK 17(7Q31.1) WILD-TYPE" "DEL PEAK 17(7Q31.1) WILD-TYPE" 
                   TCGA-BR-7717                    TCGA-BR-7722 
"DEL PEAK 17(7Q31.1) WILD-TYPE" "DEL PEAK 17(7Q31.1) WILD-TYPE" 
                   TCGA-BR-7723                    TCGA-BR-7851 
  "DEL PEAK 17(7Q31.1) MUTATED" "DEL PEAK 17(7Q31.1) WILD-TYPE" 
                   TCGA-BR-7901                    TCGA-BR-7957 
"DEL PEAK 17(7Q31.1) WILD-TYPE" "DEL PEAK 17(7Q31.1) WILD-TYPE" 
                   TCGA-BR-7958                    TCGA-BR-7959 
"DEL PEAK 17(7Q31.1) WILD-TYPE" "DEL PEAK 17(7Q31.1) WILD-TYPE" 
                   TCGA-BR-8059                    TCGA-BR-8060 
"DEL PEAK 17(7Q31.1) WILD-TYPE" "DEL PEAK 17(7Q31.1) WILD-TYPE" 
                   TCGA-BR-8077                    TCGA-BR-8078 
"DEL PEAK 17(7Q31.1) WILD-TYPE" "DEL PEAK 17(7Q31.1) WILD-TYPE" 
                   TCGA-BR-8080                    TCGA-BR-8081 
"DEL PEAK 17(7Q31.1) WILD-TYPE" "DEL PEAK 17(7Q31.1) WILD-TYPE" 
                   TCGA-BR-8284                    TCGA-BR-8285 
"DEL PEAK 17(7Q31.1) WILD-TYPE" "DEL PEAK 17(7Q31.1) WILD-TYPE" 
                   TCGA-BR-8286                    TCGA-BR-8289 
"DEL PEAK 17(7Q31.1) WILD-TYPE" "DEL PEAK 17(7Q31.1) WILD-TYPE" 
                   TCGA-BR-8291                    TCGA-BR-8295 
"DEL PEAK 17(7Q31.1) WILD-TYPE" "DEL PEAK 17(7Q31.1) WILD-TYPE" 
                   TCGA-BR-8296                    TCGA-BR-8297 
"DEL PEAK 17(7Q31.1) WILD-TYPE" "DEL PEAK 17(7Q31.1) WILD-TYPE" 
                   TCGA-CD-5798                    TCGA-CD-5799 
"DEL PEAK 17(7Q31.1) WILD-TYPE" "DEL PEAK 17(7Q31.1) WILD-TYPE" 
                   TCGA-CD-5800                    TCGA-CD-5801 
"DEL PEAK 17(7Q31.1) WILD-TYPE" "DEL PEAK 17(7Q31.1) WILD-TYPE" 
                   TCGA-CD-5802                    TCGA-CD-5803 
"DEL PEAK 17(7Q31.1) WILD-TYPE" "DEL PEAK 17(7Q31.1) WILD-TYPE" 
                   TCGA-CG-4300                    TCGA-CG-4301 
"DEL PEAK 17(7Q31.1) WILD-TYPE"   "DEL PEAK 17(7Q31.1) MUTATED" 
                   TCGA-CG-4304                    TCGA-CG-4305 
"DEL PEAK 17(7Q31.1) WILD-TYPE" "DEL PEAK 17(7Q31.1) WILD-TYPE" 
                   TCGA-CG-4306                    TCGA-CG-4436 
"DEL PEAK 17(7Q31.1) WILD-TYPE" "DEL PEAK 17(7Q31.1) WILD-TYPE" 
                   TCGA-CG-4437                    TCGA-CG-4438 
  "DEL PEAK 17(7Q31.1) MUTATED"   "DEL PEAK 17(7Q31.1) MUTATED" 
                   TCGA-CG-4440                    TCGA-CG-4441 
"DEL PEAK 17(7Q31.1) WILD-TYPE" "DEL PEAK 17(7Q31.1) WILD-TYPE" 
                   TCGA-CG-4443                    TCGA-CG-4444 
"DEL PEAK 17(7Q31.1) WILD-TYPE" "DEL PEAK 17(7Q31.1) WILD-TYPE" 
                   TCGA-CG-4449                    TCGA-CG-4455 
  "DEL PEAK 17(7Q31.1) MUTATED"   "DEL PEAK 17(7Q31.1) MUTATED" 
                   TCGA-CG-4460                    TCGA-CG-4462 
"DEL PEAK 17(7Q31.1) WILD-TYPE" "DEL PEAK 17(7Q31.1) WILD-TYPE" 
                   TCGA-CG-4465                    TCGA-CG-4466 
"DEL PEAK 17(7Q31.1) WILD-TYPE" "DEL PEAK 17(7Q31.1) WILD-TYPE" 
                   TCGA-CG-4469                    TCGA-CG-4472 
"DEL PEAK 17(7Q31.1) WILD-TYPE"   "DEL PEAK 17(7Q31.1) MUTATED" 
                   TCGA-CG-4474                    TCGA-CG-4477 
"DEL PEAK 17(7Q31.1) WILD-TYPE" "DEL PEAK 17(7Q31.1) WILD-TYPE" 
                   TCGA-CG-5716                    TCGA-CG-5717 
"DEL PEAK 17(7Q31.1) WILD-TYPE" "DEL PEAK 17(7Q31.1) WILD-TYPE" 
                   TCGA-CG-5718                    TCGA-CG-5719 
"DEL PEAK 17(7Q31.1) WILD-TYPE" "DEL PEAK 17(7Q31.1) WILD-TYPE" 
                   TCGA-CG-5720                    TCGA-CG-5721 
"DEL PEAK 17(7Q31.1) WILD-TYPE" "DEL PEAK 17(7Q31.1) WILD-TYPE" 
                   TCGA-CG-5722                    TCGA-CG-5723 
"DEL PEAK 17(7Q31.1) WILD-TYPE" "DEL PEAK 17(7Q31.1) WILD-TYPE" 
                   TCGA-CG-5724                    TCGA-CG-5725 
"DEL PEAK 17(7Q31.1) WILD-TYPE" "DEL PEAK 17(7Q31.1) WILD-TYPE" 
                   TCGA-CG-5726                    TCGA-CG-5727 
"DEL PEAK 17(7Q31.1) WILD-TYPE" "DEL PEAK 17(7Q31.1) WILD-TYPE" 
                   TCGA-CG-5728                    TCGA-CG-5730 
"DEL PEAK 17(7Q31.1) WILD-TYPE" "DEL PEAK 17(7Q31.1) WILD-TYPE" 
                   TCGA-CG-5732                    TCGA-CG-5733 
"DEL PEAK 17(7Q31.1) WILD-TYPE" "DEL PEAK 17(7Q31.1) WILD-TYPE" 
                   TCGA-CG-5734                    TCGA-D7-5577 
"DEL PEAK 17(7Q31.1) WILD-TYPE" "DEL PEAK 17(7Q31.1) WILD-TYPE" 
                   TCGA-D7-5578                    TCGA-D7-5579 
"DEL PEAK 17(7Q31.1) WILD-TYPE" "DEL PEAK 17(7Q31.1) WILD-TYPE" 
                   TCGA-D7-6518                    TCGA-D7-6519 
"DEL PEAK 17(7Q31.1) WILD-TYPE" "DEL PEAK 17(7Q31.1) WILD-TYPE" 
                   TCGA-D7-6520                    TCGA-D7-6521 
"DEL PEAK 17(7Q31.1) WILD-TYPE" "DEL PEAK 17(7Q31.1) WILD-TYPE" 
                   TCGA-D7-6522                    TCGA-D7-6524 
"DEL PEAK 17(7Q31.1) WILD-TYPE" "DEL PEAK 17(7Q31.1) WILD-TYPE" 
                   TCGA-D7-6525                    TCGA-D7-6526 
"DEL PEAK 17(7Q31.1) WILD-TYPE" "DEL PEAK 17(7Q31.1) WILD-TYPE" 
                   TCGA-D7-6527                    TCGA-D7-6528 
"DEL PEAK 17(7Q31.1) WILD-TYPE" "DEL PEAK 17(7Q31.1) WILD-TYPE" 
                   TCGA-D7-6815                    TCGA-D7-6817 
  "DEL PEAK 17(7Q31.1) MUTATED" "DEL PEAK 17(7Q31.1) WILD-TYPE" 
                   TCGA-D7-6818                    TCGA-D7-6820 
"DEL PEAK 17(7Q31.1) WILD-TYPE"   "DEL PEAK 17(7Q31.1) MUTATED" 
                   TCGA-D7-6822                    TCGA-EQ-5647 
"DEL PEAK 17(7Q31.1) WILD-TYPE" "DEL PEAK 17(7Q31.1) WILD-TYPE" 
                   TCGA-EQ-8122                    TCGA-F1-6177 
  "DEL PEAK 17(7Q31.1) MUTATED" "DEL PEAK 17(7Q31.1) WILD-TYPE" 
                   TCGA-F1-6874                    TCGA-F1-6875 
"DEL PEAK 17(7Q31.1) WILD-TYPE"   "DEL PEAK 17(7Q31.1) MUTATED" 
                   TCGA-FP-7735                    TCGA-FP-7829 
"DEL PEAK 17(7Q31.1) WILD-TYPE"   "DEL PEAK 17(7Q31.1) MUTATED" 
                   TCGA-FP-7916                    TCGA-FP-7998 
"DEL PEAK 17(7Q31.1) WILD-TYPE" "DEL PEAK 17(7Q31.1) WILD-TYPE" 
                   TCGA-HJ-7597                    TCGA-IN-7806 
"DEL PEAK 17(7Q31.1) WILD-TYPE" "DEL PEAK 17(7Q31.1) WILD-TYPE" 
                   TCGA-IN-7808                    TCGA-IP-7968 
"DEL PEAK 17(7Q31.1) WILD-TYPE"   "DEL PEAK 17(7Q31.1) MUTATED" 
                   TCGA-B7-5816                    TCGA-B7-5818 
"DEL PEAK 17(7Q31.1) WILD-TYPE" "DEL PEAK 17(7Q31.1) WILD-TYPE" 
                   TCGA-BR-6452                    TCGA-BR-6455 
"DEL PEAK 17(7Q31.1) WILD-TYPE" "DEL PEAK 17(7Q31.1) WILD-TYPE" 
                   TCGA-BR-6457                    TCGA-BR-6458 
"DEL PEAK 17(7Q31.1) WILD-TYPE" "DEL PEAK 17(7Q31.1) WILD-TYPE" 
                   TCGA-BR-6563                    TCGA-BR-6564 
"DEL PEAK 17(7Q31.1) WILD-TYPE"   "DEL PEAK 17(7Q31.1) MUTATED" 
                   TCGA-BR-6565                    TCGA-BR-6566 
"DEL PEAK 17(7Q31.1) WILD-TYPE" "DEL PEAK 17(7Q31.1) WILD-TYPE" 
                   TCGA-BR-6705                    TCGA-BR-6706 
"DEL PEAK 17(7Q31.1) WILD-TYPE"   "DEL PEAK 17(7Q31.1) MUTATED" 
                   TCGA-BR-6707                    TCGA-BR-6709 
"DEL PEAK 17(7Q31.1) WILD-TYPE" "DEL PEAK 17(7Q31.1) WILD-TYPE" 
                   TCGA-BR-6710                    TCGA-BR-6801 
"DEL PEAK 17(7Q31.1) WILD-TYPE" "DEL PEAK 17(7Q31.1) WILD-TYPE" 
                   TCGA-BR-6802                    TCGA-BR-6803 
"DEL PEAK 17(7Q31.1) WILD-TYPE" "DEL PEAK 17(7Q31.1) WILD-TYPE" 
                   TCGA-BR-6852                    TCGA-BR-7196 
"DEL PEAK 17(7Q31.1) WILD-TYPE" "DEL PEAK 17(7Q31.1) WILD-TYPE" 
                   TCGA-BR-7197                    TCGA-BR-7703 
"DEL PEAK 17(7Q31.1) WILD-TYPE" "DEL PEAK 17(7Q31.1) WILD-TYPE" 
                   TCGA-BR-7704                    TCGA-BR-7707 
"DEL PEAK 17(7Q31.1) WILD-TYPE" "DEL PEAK 17(7Q31.1) WILD-TYPE" 
                   TCGA-BR-7715                    TCGA-BR-7716 
"DEL PEAK 17(7Q31.1) WILD-TYPE" "DEL PEAK 17(7Q31.1) WILD-TYPE" 
                   TCGA-BR-7717                    TCGA-BR-7722 
"DEL PEAK 17(7Q31.1) WILD-TYPE" "DEL PEAK 17(7Q31.1) WILD-TYPE" 
                   TCGA-BR-7723                    TCGA-BR-7851 
  "DEL PEAK 17(7Q31.1) MUTATED" "DEL PEAK 17(7Q31.1) WILD-TYPE" 
                   TCGA-BR-7901                    TCGA-BR-7957 
"DEL PEAK 17(7Q31.1) WILD-TYPE" "DEL PEAK 17(7Q31.1) WILD-TYPE" 
                   TCGA-BR-7958                    TCGA-BR-7959 
"DEL PEAK 17(7Q31.1) WILD-TYPE" "DEL PEAK 17(7Q31.1) WILD-TYPE" 
                   TCGA-BR-8059                    TCGA-BR-8060 
"DEL PEAK 17(7Q31.1) WILD-TYPE" "DEL PEAK 17(7Q31.1) WILD-TYPE" 
                   TCGA-BR-8077                    TCGA-BR-8078 
"DEL PEAK 17(7Q31.1) WILD-TYPE" "DEL PEAK 17(7Q31.1) WILD-TYPE" 
                   TCGA-BR-8080                    TCGA-BR-8081 
"DEL PEAK 17(7Q31.1) WILD-TYPE" "DEL PEAK 17(7Q31.1) WILD-TYPE" 
                   TCGA-BR-8284                    TCGA-BR-8285 
"DEL PEAK 17(7Q31.1) WILD-TYPE" "DEL PEAK 17(7Q31.1) WILD-TYPE" 
                   TCGA-BR-8286                    TCGA-BR-8289 
"DEL PEAK 17(7Q31.1) WILD-TYPE" "DEL PEAK 17(7Q31.1) WILD-TYPE" 
                   TCGA-BR-8291                    TCGA-BR-8295 
"DEL PEAK 17(7Q31.1) WILD-TYPE" "DEL PEAK 17(7Q31.1) WILD-TYPE" 
                   TCGA-BR-8296                    TCGA-BR-8297 
"DEL PEAK 17(7Q31.1) WILD-TYPE" "DEL PEAK 17(7Q31.1) WILD-TYPE" 
                   TCGA-CD-5798                    TCGA-CD-5799 
"DEL PEAK 17(7Q31.1) WILD-TYPE" "DEL PEAK 17(7Q31.1) WILD-TYPE" 
                   TCGA-CD-5800                    TCGA-CD-5801 
"DEL PEAK 17(7Q31.1) WILD-TYPE" "DEL PEAK 17(7Q31.1) WILD-TYPE" 
                   TCGA-CD-5802                    TCGA-CD-5803 
"DEL PEAK 17(7Q31.1) WILD-TYPE" "DEL PEAK 17(7Q31.1) WILD-TYPE" 
                   TCGA-CG-4300                    TCGA-CG-4301 
"DEL PEAK 17(7Q31.1) WILD-TYPE"   "DEL PEAK 17(7Q31.1) MUTATED" 
                   TCGA-CG-4304                    TCGA-CG-4305 
"DEL PEAK 17(7Q31.1) WILD-TYPE" "DEL PEAK 17(7Q31.1) WILD-TYPE" 
                   TCGA-CG-4306                    TCGA-CG-4436 
"DEL PEAK 17(7Q31.1) WILD-TYPE" "DEL PEAK 17(7Q31.1) WILD-TYPE" 
                   TCGA-CG-4437                    TCGA-CG-4438 
  "DEL PEAK 17(7Q31.1) MUTATED"   "DEL PEAK 17(7Q31.1) MUTATED" 
                   TCGA-CG-4440                    TCGA-CG-4441 
"DEL PEAK 17(7Q31.1) WILD-TYPE" "DEL PEAK 17(7Q31.1) WILD-TYPE" 
                   TCGA-CG-4443                    TCGA-CG-4444 
"DEL PEAK 17(7Q31.1) WILD-TYPE" "DEL PEAK 17(7Q31.1) WILD-TYPE" 
                   TCGA-CG-4449                    TCGA-CG-4455 
  "DEL PEAK 17(7Q31.1) MUTATED"   "DEL PEAK 17(7Q31.1) MUTATED" 
                   TCGA-CG-4460                    TCGA-CG-4462 
"DEL PEAK 17(7Q31.1) WILD-TYPE" "DEL PEAK 17(7Q31.1) WILD-TYPE" 
                   TCGA-CG-4465                    TCGA-CG-4466 
"DEL PEAK 17(7Q31.1) WILD-TYPE" "DEL PEAK 17(7Q31.1) WILD-TYPE" 
                   TCGA-CG-4469                    TCGA-CG-4472 
"DEL PEAK 17(7Q31.1) WILD-TYPE"   "DEL PEAK 17(7Q31.1) MUTATED" 
                   TCGA-CG-4474                    TCGA-CG-4477 
"DEL PEAK 17(7Q31.1) WILD-TYPE" "DEL PEAK 17(7Q31.1) WILD-TYPE" 
                   TCGA-CG-5716                    TCGA-CG-5717 
"DEL PEAK 17(7Q31.1) WILD-TYPE" "DEL PEAK 17(7Q31.1) WILD-TYPE" 
                   TCGA-CG-5718                    TCGA-CG-5719 
"DEL PEAK 17(7Q31.1) WILD-TYPE" "DEL PEAK 17(7Q31.1) WILD-TYPE" 
                   TCGA-CG-5720                    TCGA-CG-5721 
"DEL PEAK 17(7Q31.1) WILD-TYPE" "DEL PEAK 17(7Q31.1) WILD-TYPE" 
                   TCGA-CG-5722                    TCGA-CG-5723 
"DEL PEAK 17(7Q31.1) WILD-TYPE" "DEL PEAK 17(7Q31.1) WILD-TYPE" 
                   TCGA-CG-5724                    TCGA-CG-5725 
"DEL PEAK 17(7Q31.1) WILD-TYPE" "DEL PEAK 17(7Q31.1) WILD-TYPE" 
                   TCGA-CG-5726                    TCGA-CG-5727 
"DEL PEAK 17(7Q31.1) WILD-TYPE" "DEL PEAK 17(7Q31.1) WILD-TYPE" 
                   TCGA-CG-5728                    TCGA-CG-5730 
"DEL PEAK 17(7Q31.1) WILD-TYPE" "DEL PEAK 17(7Q31.1) WILD-TYPE" 
                   TCGA-CG-5732                    TCGA-CG-5733 
"DEL PEAK 17(7Q31.1) WILD-TYPE" "DEL PEAK 17(7Q31.1) WILD-TYPE" 
                   TCGA-CG-5734                    TCGA-D7-5577 
"DEL PEAK 17(7Q31.1) WILD-TYPE" "DEL PEAK 17(7Q31.1) WILD-TYPE" 
                   TCGA-D7-5578                    TCGA-D7-5579 
"DEL PEAK 17(7Q31.1) WILD-TYPE" "DEL PEAK 17(7Q31.1) WILD-TYPE" 
                   TCGA-D7-6518                    TCGA-D7-6519 
"DEL PEAK 17(7Q31.1) WILD-TYPE" "DEL PEAK 17(7Q31.1) WILD-TYPE" 
                   TCGA-D7-6520                    TCGA-D7-6521 
"DEL PEAK 17(7Q31.1) WILD-TYPE" "DEL PEAK 17(7Q31.1) WILD-TYPE" 
                   TCGA-D7-6522                    TCGA-D7-6524 
"DEL PEAK 17(7Q31.1) WILD-TYPE" "DEL PEAK 17(7Q31.1) WILD-TYPE" 
                   TCGA-D7-6525                    TCGA-D7-6526 
"DEL PEAK 17(7Q31.1) WILD-TYPE" "DEL PEAK 17(7Q31.1) WILD-TYPE" 
                   TCGA-D7-6527                    TCGA-D7-6528 
"DEL PEAK 17(7Q31.1) WILD-TYPE" "DEL PEAK 17(7Q31.1) WILD-TYPE" 
                   TCGA-D7-6815                    TCGA-D7-6817 
  "DEL PEAK 17(7Q31.1) MUTATED" "DEL PEAK 17(7Q31.1) WILD-TYPE" 
                   TCGA-D7-6818                    TCGA-D7-6820 
"DEL PEAK 17(7Q31.1) WILD-TYPE"   "DEL PEAK 17(7Q31.1) MUTATED" 
                   TCGA-D7-6822                    TCGA-EQ-5647 
"DEL PEAK 17(7Q31.1) WILD-TYPE" "DEL PEAK 17(7Q31.1) WILD-TYPE" 
                   TCGA-EQ-8122                    TCGA-F1-6177 
  "DEL PEAK 17(7Q31.1) MUTATED" "DEL PEAK 17(7Q31.1) WILD-TYPE" 
                   TCGA-F1-6874                    TCGA-F1-6875 
"DEL PEAK 17(7Q31.1) WILD-TYPE"   "DEL PEAK 17(7Q31.1) MUTATED" 
                   TCGA-FP-7735                    TCGA-FP-7829 
"DEL PEAK 17(7Q31.1) WILD-TYPE"   "DEL PEAK 17(7Q31.1) MUTATED" 
                   TCGA-FP-7916                    TCGA-FP-7998 
"DEL PEAK 17(7Q31.1) WILD-TYPE" "DEL PEAK 17(7Q31.1) WILD-TYPE" 
                   TCGA-HJ-7597                    TCGA-IN-7806 
"DEL PEAK 17(7Q31.1) WILD-TYPE" "DEL PEAK 17(7Q31.1) WILD-TYPE" 
                   TCGA-IN-7808                    TCGA-IP-7968 
"DEL PEAK 17(7Q31.1) WILD-TYPE"   "DEL PEAK 17(7Q31.1) MUTATED" 
[1] "hr="     "2.4e+08"
D43V2, continuous
D43V3, binary
[1] "tbl2"
                               cls
clus                            [,1] [,2]
  DEL PEAK 17(7Q31.1) MUTATED      5   14
  DEL PEAK 17(7Q31.1) WILD-TYPE   60   82
        clus
vv       DEL PEAK 17(7Q31.1) MUTATED DEL PEAK 17(7Q31.1) WILD-TYPE
  FEMALE                           5                            60
  MALE                            14                            82
D43V4, multiclass
D43V5, multiclass
    clus
vv   DEL PEAK 17(7Q31.1) MUTATED DEL PEAK 17(7Q31.1) WILD-TYPE
  T1                           0                             6
  T2                           6                            47
  T3                           9                            50
  T4                           3                            30
D43V6, multiclass
    clus
vv   DEL PEAK 17(7Q31.1) MUTATED DEL PEAK 17(7Q31.1) WILD-TYPE
  N0                           1                            49
  N1                          13                            44
  N2                           4                            20
  N3                           0                            19
D43V7, multiclass
    clus
vv   DEL PEAK 17(7Q31.1) MUTATED DEL PEAK 17(7Q31.1) WILD-TYPE
  M0                          16                           116
  M1                           1                            17
  MX                           2                             9
D43V8, multiclass
     clus
vv    DEL PEAK 17(7Q31.1) MUTATED DEL PEAK 17(7Q31.1) WILD-TYPE
  I                             1                            24
  II                            7                            36
  III                           7                            41
  IV                            3                            26
D43V9, binary
[1] "tbl2"
                               cls
clus                            [,1] [,2]
  DEL PEAK 17(7Q31.1) MUTATED     19    0
  DEL PEAK 17(7Q31.1) WILD-TYPE  137    5
     clus
vv    DEL PEAK 17(7Q31.1) MUTATED DEL PEAK 17(7Q31.1) WILD-TYPE
  NO                            0                             5
  YES                          19                           137

Clustering(44) Variable = Del Peak 18(7q36.3) mutation analysis
D44V1, survival
                   TCGA-B7-5816                    TCGA-B7-5818 
"DEL PEAK 18(7Q36.3) WILD-TYPE" "DEL PEAK 18(7Q36.3) WILD-TYPE" 
                   TCGA-BR-6452                    TCGA-BR-6455 
"DEL PEAK 18(7Q36.3) WILD-TYPE" "DEL PEAK 18(7Q36.3) WILD-TYPE" 
                   TCGA-BR-6457                    TCGA-BR-6458 
"DEL PEAK 18(7Q36.3) WILD-TYPE"   "DEL PEAK 18(7Q36.3) MUTATED" 
                   TCGA-BR-6563                    TCGA-BR-6564 
"DEL PEAK 18(7Q36.3) WILD-TYPE"   "DEL PEAK 18(7Q36.3) MUTATED" 
                   TCGA-BR-6565                    TCGA-BR-6566 
"DEL PEAK 18(7Q36.3) WILD-TYPE" "DEL PEAK 18(7Q36.3) WILD-TYPE" 
                   TCGA-BR-6705                    TCGA-BR-6706 
"DEL PEAK 18(7Q36.3) WILD-TYPE" "DEL PEAK 18(7Q36.3) WILD-TYPE" 
                   TCGA-BR-6707                    TCGA-BR-6709 
"DEL PEAK 18(7Q36.3) WILD-TYPE" "DEL PEAK 18(7Q36.3) WILD-TYPE" 
                   TCGA-BR-6710                    TCGA-BR-6801 
"DEL PEAK 18(7Q36.3) WILD-TYPE" "DEL PEAK 18(7Q36.3) WILD-TYPE" 
                   TCGA-BR-6802                    TCGA-BR-6803 
"DEL PEAK 18(7Q36.3) WILD-TYPE" "DEL PEAK 18(7Q36.3) WILD-TYPE" 
                   TCGA-BR-6852                    TCGA-BR-7196 
"DEL PEAK 18(7Q36.3) WILD-TYPE" "DEL PEAK 18(7Q36.3) WILD-TYPE" 
                   TCGA-BR-7197                    TCGA-BR-7703 
"DEL PEAK 18(7Q36.3) WILD-TYPE" "DEL PEAK 18(7Q36.3) WILD-TYPE" 
                   TCGA-BR-7704                    TCGA-BR-7707 
"DEL PEAK 18(7Q36.3) WILD-TYPE" "DEL PEAK 18(7Q36.3) WILD-TYPE" 
                   TCGA-BR-7715                    TCGA-BR-7716 
"DEL PEAK 18(7Q36.3) WILD-TYPE" "DEL PEAK 18(7Q36.3) WILD-TYPE" 
                   TCGA-BR-7717                    TCGA-BR-7722 
"DEL PEAK 18(7Q36.3) WILD-TYPE" "DEL PEAK 18(7Q36.3) WILD-TYPE" 
                   TCGA-BR-7723                    TCGA-BR-7851 
  "DEL PEAK 18(7Q36.3) MUTATED" "DEL PEAK 18(7Q36.3) WILD-TYPE" 
                   TCGA-BR-7901                    TCGA-BR-7957 
  "DEL PEAK 18(7Q36.3) MUTATED" "DEL PEAK 18(7Q36.3) WILD-TYPE" 
                   TCGA-BR-7958                    TCGA-BR-7959 
"DEL PEAK 18(7Q36.3) WILD-TYPE" "DEL PEAK 18(7Q36.3) WILD-TYPE" 
                   TCGA-BR-8059                    TCGA-BR-8060 
"DEL PEAK 18(7Q36.3) WILD-TYPE" "DEL PEAK 18(7Q36.3) WILD-TYPE" 
                   TCGA-BR-8077                    TCGA-BR-8078 
"DEL PEAK 18(7Q36.3) WILD-TYPE" "DEL PEAK 18(7Q36.3) WILD-TYPE" 
                   TCGA-BR-8080                    TCGA-BR-8081 
"DEL PEAK 18(7Q36.3) WILD-TYPE" "DEL PEAK 18(7Q36.3) WILD-TYPE" 
                   TCGA-BR-8284                    TCGA-BR-8285 
"DEL PEAK 18(7Q36.3) WILD-TYPE" "DEL PEAK 18(7Q36.3) WILD-TYPE" 
                   TCGA-BR-8286                    TCGA-BR-8289 
"DEL PEAK 18(7Q36.3) WILD-TYPE" "DEL PEAK 18(7Q36.3) WILD-TYPE" 
                   TCGA-BR-8291                    TCGA-BR-8295 
"DEL PEAK 18(7Q36.3) WILD-TYPE" "DEL PEAK 18(7Q36.3) WILD-TYPE" 
                   TCGA-BR-8296                    TCGA-BR-8297 
"DEL PEAK 18(7Q36.3) WILD-TYPE" "DEL PEAK 18(7Q36.3) WILD-TYPE" 
                   TCGA-CD-5798                    TCGA-CD-5799 
"DEL PEAK 18(7Q36.3) WILD-TYPE" "DEL PEAK 18(7Q36.3) WILD-TYPE" 
                   TCGA-CD-5800                    TCGA-CD-5801 
"DEL PEAK 18(7Q36.3) WILD-TYPE" "DEL PEAK 18(7Q36.3) WILD-TYPE" 
                   TCGA-CD-5802                    TCGA-CD-5803 
  "DEL PEAK 18(7Q36.3) MUTATED" "DEL PEAK 18(7Q36.3) WILD-TYPE" 
                   TCGA-CG-4300                    TCGA-CG-4301 
"DEL PEAK 18(7Q36.3) WILD-TYPE"   "DEL PEAK 18(7Q36.3) MUTATED" 
                   TCGA-CG-4304                    TCGA-CG-4305 
"DEL PEAK 18(7Q36.3) WILD-TYPE" "DEL PEAK 18(7Q36.3) WILD-TYPE" 
                   TCGA-CG-4306                    TCGA-CG-4436 
"DEL PEAK 18(7Q36.3) WILD-TYPE" "DEL PEAK 18(7Q36.3) WILD-TYPE" 
                   TCGA-CG-4437                    TCGA-CG-4438 
  "DEL PEAK 18(7Q36.3) MUTATED"   "DEL PEAK 18(7Q36.3) MUTATED" 
                   TCGA-CG-4440                    TCGA-CG-4441 
"DEL PEAK 18(7Q36.3) WILD-TYPE" "DEL PEAK 18(7Q36.3) WILD-TYPE" 
                   TCGA-CG-4443                    TCGA-CG-4444 
"DEL PEAK 18(7Q36.3) WILD-TYPE" "DEL PEAK 18(7Q36.3) WILD-TYPE" 
                   TCGA-CG-4449                    TCGA-CG-4455 
  "DEL PEAK 18(7Q36.3) MUTATED"   "DEL PEAK 18(7Q36.3) MUTATED" 
                   TCGA-CG-4460                    TCGA-CG-4462 
"DEL PEAK 18(7Q36.3) WILD-TYPE" "DEL PEAK 18(7Q36.3) WILD-TYPE" 
                   TCGA-CG-4465                    TCGA-CG-4466 
"DEL PEAK 18(7Q36.3) WILD-TYPE" "DEL PEAK 18(7Q36.3) WILD-TYPE" 
                   TCGA-CG-4469                    TCGA-CG-4472 
"DEL PEAK 18(7Q36.3) WILD-TYPE"   "DEL PEAK 18(7Q36.3) MUTATED" 
                   TCGA-CG-4474                    TCGA-CG-4477 
"DEL PEAK 18(7Q36.3) WILD-TYPE" "DEL PEAK 18(7Q36.3) WILD-TYPE" 
                   TCGA-CG-5716                    TCGA-CG-5717 
"DEL PEAK 18(7Q36.3) WILD-TYPE" "DEL PEAK 18(7Q36.3) WILD-TYPE" 
                   TCGA-CG-5718                    TCGA-CG-5719 
"DEL PEAK 18(7Q36.3) WILD-TYPE" "DEL PEAK 18(7Q36.3) WILD-TYPE" 
                   TCGA-CG-5720                    TCGA-CG-5721 
"DEL PEAK 18(7Q36.3) WILD-TYPE" "DEL PEAK 18(7Q36.3) WILD-TYPE" 
                   TCGA-CG-5722                    TCGA-CG-5723 
"DEL PEAK 18(7Q36.3) WILD-TYPE" "DEL PEAK 18(7Q36.3) WILD-TYPE" 
                   TCGA-CG-5724                    TCGA-CG-5725 
  "DEL PEAK 18(7Q36.3) MUTATED" "DEL PEAK 18(7Q36.3) WILD-TYPE" 
                   TCGA-CG-5726                    TCGA-CG-5727 
"DEL PEAK 18(7Q36.3) WILD-TYPE" "DEL PEAK 18(7Q36.3) WILD-TYPE" 
                   TCGA-CG-5728                    TCGA-CG-5730 
"DEL PEAK 18(7Q36.3) WILD-TYPE" "DEL PEAK 18(7Q36.3) WILD-TYPE" 
                   TCGA-CG-5732                    TCGA-CG-5733 
"DEL PEAK 18(7Q36.3) WILD-TYPE" "DEL PEAK 18(7Q36.3) WILD-TYPE" 
                   TCGA-CG-5734                    TCGA-D7-5577 
"DEL PEAK 18(7Q36.3) WILD-TYPE" "DEL PEAK 18(7Q36.3) WILD-TYPE" 
                   TCGA-D7-5578                    TCGA-D7-5579 
"DEL PEAK 18(7Q36.3) WILD-TYPE" "DEL PEAK 18(7Q36.3) WILD-TYPE" 
                   TCGA-D7-6518                    TCGA-D7-6519 
"DEL PEAK 18(7Q36.3) WILD-TYPE"   "DEL PEAK 18(7Q36.3) MUTATED" 
                   TCGA-D7-6520                    TCGA-D7-6521 
"DEL PEAK 18(7Q36.3) WILD-TYPE" "DEL PEAK 18(7Q36.3) WILD-TYPE" 
                   TCGA-D7-6522                    TCGA-D7-6524 
"DEL PEAK 18(7Q36.3) WILD-TYPE" "DEL PEAK 18(7Q36.3) WILD-TYPE" 
                   TCGA-D7-6525                    TCGA-D7-6526 
  "DEL PEAK 18(7Q36.3) MUTATED"   "DEL PEAK 18(7Q36.3) MUTATED" 
                   TCGA-D7-6527                    TCGA-D7-6528 
"DEL PEAK 18(7Q36.3) WILD-TYPE" "DEL PEAK 18(7Q36.3) WILD-TYPE" 
                   TCGA-D7-6815                    TCGA-D7-6817 
  "DEL PEAK 18(7Q36.3) MUTATED"   "DEL PEAK 18(7Q36.3) MUTATED" 
                   TCGA-D7-6818                    TCGA-D7-6820 
  "DEL PEAK 18(7Q36.3) MUTATED"   "DEL PEAK 18(7Q36.3) MUTATED" 
                   TCGA-D7-6822                    TCGA-EQ-5647 
"DEL PEAK 18(7Q36.3) WILD-TYPE" "DEL PEAK 18(7Q36.3) WILD-TYPE" 
                   TCGA-EQ-8122                    TCGA-F1-6177 
  "DEL PEAK 18(7Q36.3) MUTATED" "DEL PEAK 18(7Q36.3) WILD-TYPE" 
                   TCGA-F1-6874                    TCGA-F1-6875 
"DEL PEAK 18(7Q36.3) WILD-TYPE" "DEL PEAK 18(7Q36.3) WILD-TYPE" 
                   TCGA-FP-7735                    TCGA-FP-7829 
"DEL PEAK 18(7Q36.3) WILD-TYPE"   "DEL PEAK 18(7Q36.3) MUTATED" 
                   TCGA-FP-7916                    TCGA-FP-7998 
"DEL PEAK 18(7Q36.3) WILD-TYPE" "DEL PEAK 18(7Q36.3) WILD-TYPE" 
                   TCGA-HJ-7597                    TCGA-IN-7806 
"DEL PEAK 18(7Q36.3) WILD-TYPE" "DEL PEAK 18(7Q36.3) WILD-TYPE" 
                   TCGA-IN-7808                    TCGA-IP-7968 
  "DEL PEAK 18(7Q36.3) MUTATED" "DEL PEAK 18(7Q36.3) WILD-TYPE" 
                   TCGA-B7-5816                    TCGA-B7-5818 
"DEL PEAK 18(7Q36.3) WILD-TYPE" "DEL PEAK 18(7Q36.3) WILD-TYPE" 
                   TCGA-BR-6452                    TCGA-BR-6455 
"DEL PEAK 18(7Q36.3) WILD-TYPE" "DEL PEAK 18(7Q36.3) WILD-TYPE" 
                   TCGA-BR-6457                    TCGA-BR-6458 
"DEL PEAK 18(7Q36.3) WILD-TYPE"   "DEL PEAK 18(7Q36.3) MUTATED" 
                   TCGA-BR-6563                    TCGA-BR-6564 
"DEL PEAK 18(7Q36.3) WILD-TYPE"   "DEL PEAK 18(7Q36.3) MUTATED" 
                   TCGA-BR-6565                    TCGA-BR-6566 
"DEL PEAK 18(7Q36.3) WILD-TYPE" "DEL PEAK 18(7Q36.3) WILD-TYPE" 
                   TCGA-BR-6705                    TCGA-BR-6706 
"DEL PEAK 18(7Q36.3) WILD-TYPE" "DEL PEAK 18(7Q36.3) WILD-TYPE" 
                   TCGA-BR-6707                    TCGA-BR-6709 
"DEL PEAK 18(7Q36.3) WILD-TYPE" "DEL PEAK 18(7Q36.3) WILD-TYPE" 
                   TCGA-BR-6710                    TCGA-BR-6801 
"DEL PEAK 18(7Q36.3) WILD-TYPE" "DEL PEAK 18(7Q36.3) WILD-TYPE" 
                   TCGA-BR-6802                    TCGA-BR-6803 
"DEL PEAK 18(7Q36.3) WILD-TYPE" "DEL PEAK 18(7Q36.3) WILD-TYPE" 
                   TCGA-BR-6852                    TCGA-BR-7196 
"DEL PEAK 18(7Q36.3) WILD-TYPE" "DEL PEAK 18(7Q36.3) WILD-TYPE" 
                   TCGA-BR-7197                    TCGA-BR-7703 
"DEL PEAK 18(7Q36.3) WILD-TYPE" "DEL PEAK 18(7Q36.3) WILD-TYPE" 
                   TCGA-BR-7704                    TCGA-BR-7707 
"DEL PEAK 18(7Q36.3) WILD-TYPE" "DEL PEAK 18(7Q36.3) WILD-TYPE" 
                   TCGA-BR-7715                    TCGA-BR-7716 
"DEL PEAK 18(7Q36.3) WILD-TYPE" "DEL PEAK 18(7Q36.3) WILD-TYPE" 
                   TCGA-BR-7717                    TCGA-BR-7722 
"DEL PEAK 18(7Q36.3) WILD-TYPE" "DEL PEAK 18(7Q36.3) WILD-TYPE" 
                   TCGA-BR-7723                    TCGA-BR-7851 
  "DEL PEAK 18(7Q36.3) MUTATED" "DEL PEAK 18(7Q36.3) WILD-TYPE" 
                   TCGA-BR-7901                    TCGA-BR-7957 
  "DEL PEAK 18(7Q36.3) MUTATED" "DEL PEAK 18(7Q36.3) WILD-TYPE" 
                   TCGA-BR-7958                    TCGA-BR-7959 
"DEL PEAK 18(7Q36.3) WILD-TYPE" "DEL PEAK 18(7Q36.3) WILD-TYPE" 
                   TCGA-BR-8059                    TCGA-BR-8060 
"DEL PEAK 18(7Q36.3) WILD-TYPE" "DEL PEAK 18(7Q36.3) WILD-TYPE" 
                   TCGA-BR-8077                    TCGA-BR-8078 
"DEL PEAK 18(7Q36.3) WILD-TYPE" "DEL PEAK 18(7Q36.3) WILD-TYPE" 
                   TCGA-BR-8080                    TCGA-BR-8081 
"DEL PEAK 18(7Q36.3) WILD-TYPE" "DEL PEAK 18(7Q36.3) WILD-TYPE" 
                   TCGA-BR-8284                    TCGA-BR-8285 
"DEL PEAK 18(7Q36.3) WILD-TYPE" "DEL PEAK 18(7Q36.3) WILD-TYPE" 
                   TCGA-BR-8286                    TCGA-BR-8289 
"DEL PEAK 18(7Q36.3) WILD-TYPE" "DEL PEAK 18(7Q36.3) WILD-TYPE" 
                   TCGA-BR-8291                    TCGA-BR-8295 
"DEL PEAK 18(7Q36.3) WILD-TYPE" "DEL PEAK 18(7Q36.3) WILD-TYPE" 
                   TCGA-BR-8296                    TCGA-BR-8297 
"DEL PEAK 18(7Q36.3) WILD-TYPE" "DEL PEAK 18(7Q36.3) WILD-TYPE" 
                   TCGA-CD-5798                    TCGA-CD-5799 
"DEL PEAK 18(7Q36.3) WILD-TYPE" "DEL PEAK 18(7Q36.3) WILD-TYPE" 
                   TCGA-CD-5800                    TCGA-CD-5801 
"DEL PEAK 18(7Q36.3) WILD-TYPE" "DEL PEAK 18(7Q36.3) WILD-TYPE" 
                   TCGA-CD-5802                    TCGA-CD-5803 
  "DEL PEAK 18(7Q36.3) MUTATED" "DEL PEAK 18(7Q36.3) WILD-TYPE" 
                   TCGA-CG-4300                    TCGA-CG-4301 
"DEL PEAK 18(7Q36.3) WILD-TYPE"   "DEL PEAK 18(7Q36.3) MUTATED" 
                   TCGA-CG-4304                    TCGA-CG-4305 
"DEL PEAK 18(7Q36.3) WILD-TYPE" "DEL PEAK 18(7Q36.3) WILD-TYPE" 
                   TCGA-CG-4306                    TCGA-CG-4436 
"DEL PEAK 18(7Q36.3) WILD-TYPE" "DEL PEAK 18(7Q36.3) WILD-TYPE" 
                   TCGA-CG-4437                    TCGA-CG-4438 
  "DEL PEAK 18(7Q36.3) MUTATED"   "DEL PEAK 18(7Q36.3) MUTATED" 
                   TCGA-CG-4440                    TCGA-CG-4441 
"DEL PEAK 18(7Q36.3) WILD-TYPE" "DEL PEAK 18(7Q36.3) WILD-TYPE" 
                   TCGA-CG-4443                    TCGA-CG-4444 
"DEL PEAK 18(7Q36.3) WILD-TYPE" "DEL PEAK 18(7Q36.3) WILD-TYPE" 
                   TCGA-CG-4449                    TCGA-CG-4455 
  "DEL PEAK 18(7Q36.3) MUTATED"   "DEL PEAK 18(7Q36.3) MUTATED" 
                   TCGA-CG-4460                    TCGA-CG-4462 
"DEL PEAK 18(7Q36.3) WILD-TYPE" "DEL PEAK 18(7Q36.3) WILD-TYPE" 
                   TCGA-CG-4465                    TCGA-CG-4466 
"DEL PEAK 18(7Q36.3) WILD-TYPE" "DEL PEAK 18(7Q36.3) WILD-TYPE" 
                   TCGA-CG-4469                    TCGA-CG-4472 
"DEL PEAK 18(7Q36.3) WILD-TYPE"   "DEL PEAK 18(7Q36.3) MUTATED" 
                   TCGA-CG-4474                    TCGA-CG-4477 
"DEL PEAK 18(7Q36.3) WILD-TYPE" "DEL PEAK 18(7Q36.3) WILD-TYPE" 
                   TCGA-CG-5716                    TCGA-CG-5717 
"DEL PEAK 18(7Q36.3) WILD-TYPE" "DEL PEAK 18(7Q36.3) WILD-TYPE" 
                   TCGA-CG-5718                    TCGA-CG-5719 
"DEL PEAK 18(7Q36.3) WILD-TYPE" "DEL PEAK 18(7Q36.3) WILD-TYPE" 
                   TCGA-CG-5720                    TCGA-CG-5721 
"DEL PEAK 18(7Q36.3) WILD-TYPE" "DEL PEAK 18(7Q36.3) WILD-TYPE" 
                   TCGA-CG-5722                    TCGA-CG-5723 
"DEL PEAK 18(7Q36.3) WILD-TYPE" "DEL PEAK 18(7Q36.3) WILD-TYPE" 
                   TCGA-CG-5724                    TCGA-CG-5725 
  "DEL PEAK 18(7Q36.3) MUTATED" "DEL PEAK 18(7Q36.3) WILD-TYPE" 
                   TCGA-CG-5726                    TCGA-CG-5727 
"DEL PEAK 18(7Q36.3) WILD-TYPE" "DEL PEAK 18(7Q36.3) WILD-TYPE" 
                   TCGA-CG-5728                    TCGA-CG-5730 
"DEL PEAK 18(7Q36.3) WILD-TYPE" "DEL PEAK 18(7Q36.3) WILD-TYPE" 
                   TCGA-CG-5732                    TCGA-CG-5733 
"DEL PEAK 18(7Q36.3) WILD-TYPE" "DEL PEAK 18(7Q36.3) WILD-TYPE" 
                   TCGA-CG-5734                    TCGA-D7-5577 
"DEL PEAK 18(7Q36.3) WILD-TYPE" "DEL PEAK 18(7Q36.3) WILD-TYPE" 
                   TCGA-D7-5578                    TCGA-D7-5579 
"DEL PEAK 18(7Q36.3) WILD-TYPE" "DEL PEAK 18(7Q36.3) WILD-TYPE" 
                   TCGA-D7-6518                    TCGA-D7-6519 
"DEL PEAK 18(7Q36.3) WILD-TYPE"   "DEL PEAK 18(7Q36.3) MUTATED" 
                   TCGA-D7-6520                    TCGA-D7-6521 
"DEL PEAK 18(7Q36.3) WILD-TYPE" "DEL PEAK 18(7Q36.3) WILD-TYPE" 
                   TCGA-D7-6522                    TCGA-D7-6524 
"DEL PEAK 18(7Q36.3) WILD-TYPE" "DEL PEAK 18(7Q36.3) WILD-TYPE" 
                   TCGA-D7-6525                    TCGA-D7-6526 
  "DEL PEAK 18(7Q36.3) MUTATED"   "DEL PEAK 18(7Q36.3) MUTATED" 
                   TCGA-D7-6527                    TCGA-D7-6528 
"DEL PEAK 18(7Q36.3) WILD-TYPE" "DEL PEAK 18(7Q36.3) WILD-TYPE" 
                   TCGA-D7-6815                    TCGA-D7-6817 
  "DEL PEAK 18(7Q36.3) MUTATED"   "DEL PEAK 18(7Q36.3) MUTATED" 
                   TCGA-D7-6818                    TCGA-D7-6820 
  "DEL PEAK 18(7Q36.3) MUTATED"   "DEL PEAK 18(7Q36.3) MUTATED" 
                   TCGA-D7-6822                    TCGA-EQ-5647 
"DEL PEAK 18(7Q36.3) WILD-TYPE" "DEL PEAK 18(7Q36.3) WILD-TYPE" 
                   TCGA-EQ-8122                    TCGA-F1-6177 
  "DEL PEAK 18(7Q36.3) MUTATED" "DEL PEAK 18(7Q36.3) WILD-TYPE" 
                   TCGA-F1-6874                    TCGA-F1-6875 
"DEL PEAK 18(7Q36.3) WILD-TYPE" "DEL PEAK 18(7Q36.3) WILD-TYPE" 
                   TCGA-FP-7735                    TCGA-FP-7829 
"DEL PEAK 18(7Q36.3) WILD-TYPE"   "DEL PEAK 18(7Q36.3) MUTATED" 
                   TCGA-FP-7916                    TCGA-FP-7998 
"DEL PEAK 18(7Q36.3) WILD-TYPE" "DEL PEAK 18(7Q36.3) WILD-TYPE" 
                   TCGA-HJ-7597                    TCGA-IN-7806 
"DEL PEAK 18(7Q36.3) WILD-TYPE" "DEL PEAK 18(7Q36.3) WILD-TYPE" 
                   TCGA-IN-7808                    TCGA-IP-7968 
  "DEL PEAK 18(7Q36.3) MUTATED" "DEL PEAK 18(7Q36.3) WILD-TYPE" 
                   TCGA-B7-5816                    TCGA-B7-5818 
"DEL PEAK 18(7Q36.3) WILD-TYPE" "DEL PEAK 18(7Q36.3) WILD-TYPE" 
                   TCGA-BR-6452                    TCGA-BR-6455 
"DEL PEAK 18(7Q36.3) WILD-TYPE" "DEL PEAK 18(7Q36.3) WILD-TYPE" 
                   TCGA-BR-6457                    TCGA-BR-6458 
"DEL PEAK 18(7Q36.3) WILD-TYPE"   "DEL PEAK 18(7Q36.3) MUTATED" 
                   TCGA-BR-6563                    TCGA-BR-6564 
"DEL PEAK 18(7Q36.3) WILD-TYPE"   "DEL PEAK 18(7Q36.3) MUTATED" 
                   TCGA-BR-6565                    TCGA-BR-6566 
"DEL PEAK 18(7Q36.3) WILD-TYPE" "DEL PEAK 18(7Q36.3) WILD-TYPE" 
                   TCGA-BR-6705                    TCGA-BR-6706 
"DEL PEAK 18(7Q36.3) WILD-TYPE" "DEL PEAK 18(7Q36.3) WILD-TYPE" 
                   TCGA-BR-6707                    TCGA-BR-6709 
"DEL PEAK 18(7Q36.3) WILD-TYPE" "DEL PEAK 18(7Q36.3) WILD-TYPE" 
                   TCGA-BR-6710                    TCGA-BR-6801 
"DEL PEAK 18(7Q36.3) WILD-TYPE" "DEL PEAK 18(7Q36.3) WILD-TYPE" 
                   TCGA-BR-6802                    TCGA-BR-6803 
"DEL PEAK 18(7Q36.3) WILD-TYPE" "DEL PEAK 18(7Q36.3) WILD-TYPE" 
                   TCGA-BR-6852                    TCGA-BR-7196 
"DEL PEAK 18(7Q36.3) WILD-TYPE" "DEL PEAK 18(7Q36.3) WILD-TYPE" 
                   TCGA-BR-7197                    TCGA-BR-7703 
"DEL PEAK 18(7Q36.3) WILD-TYPE" "DEL PEAK 18(7Q36.3) WILD-TYPE" 
                   TCGA-BR-7704                    TCGA-BR-7707 
"DEL PEAK 18(7Q36.3) WILD-TYPE" "DEL PEAK 18(7Q36.3) WILD-TYPE" 
                   TCGA-BR-7715                    TCGA-BR-7716 
"DEL PEAK 18(7Q36.3) WILD-TYPE" "DEL PEAK 18(7Q36.3) WILD-TYPE" 
                   TCGA-BR-7717                    TCGA-BR-7722 
"DEL PEAK 18(7Q36.3) WILD-TYPE" "DEL PEAK 18(7Q36.3) WILD-TYPE" 
                   TCGA-BR-7723                    TCGA-BR-7851 
  "DEL PEAK 18(7Q36.3) MUTATED" "DEL PEAK 18(7Q36.3) WILD-TYPE" 
                   TCGA-BR-7901                    TCGA-BR-7957 
  "DEL PEAK 18(7Q36.3) MUTATED" "DEL PEAK 18(7Q36.3) WILD-TYPE" 
                   TCGA-BR-7958                    TCGA-BR-7959 
"DEL PEAK 18(7Q36.3) WILD-TYPE" "DEL PEAK 18(7Q36.3) WILD-TYPE" 
                   TCGA-BR-8059                    TCGA-BR-8060 
"DEL PEAK 18(7Q36.3) WILD-TYPE" "DEL PEAK 18(7Q36.3) WILD-TYPE" 
                   TCGA-BR-8077                    TCGA-BR-8078 
"DEL PEAK 18(7Q36.3) WILD-TYPE" "DEL PEAK 18(7Q36.3) WILD-TYPE" 
                   TCGA-BR-8080                    TCGA-BR-8081 
"DEL PEAK 18(7Q36.3) WILD-TYPE" "DEL PEAK 18(7Q36.3) WILD-TYPE" 
                   TCGA-BR-8284                    TCGA-BR-8285 
"DEL PEAK 18(7Q36.3) WILD-TYPE" "DEL PEAK 18(7Q36.3) WILD-TYPE" 
                   TCGA-BR-8286                    TCGA-BR-8289 
"DEL PEAK 18(7Q36.3) WILD-TYPE" "DEL PEAK 18(7Q36.3) WILD-TYPE" 
                   TCGA-BR-8291                    TCGA-BR-8295 
"DEL PEAK 18(7Q36.3) WILD-TYPE" "DEL PEAK 18(7Q36.3) WILD-TYPE" 
                   TCGA-BR-8296                    TCGA-BR-8297 
"DEL PEAK 18(7Q36.3) WILD-TYPE" "DEL PEAK 18(7Q36.3) WILD-TYPE" 
                   TCGA-CD-5798                    TCGA-CD-5799 
"DEL PEAK 18(7Q36.3) WILD-TYPE" "DEL PEAK 18(7Q36.3) WILD-TYPE" 
                   TCGA-CD-5800                    TCGA-CD-5801 
"DEL PEAK 18(7Q36.3) WILD-TYPE" "DEL PEAK 18(7Q36.3) WILD-TYPE" 
                   TCGA-CD-5802                    TCGA-CD-5803 
  "DEL PEAK 18(7Q36.3) MUTATED" "DEL PEAK 18(7Q36.3) WILD-TYPE" 
                   TCGA-CG-4300                    TCGA-CG-4301 
"DEL PEAK 18(7Q36.3) WILD-TYPE"   "DEL PEAK 18(7Q36.3) MUTATED" 
                   TCGA-CG-4304                    TCGA-CG-4305 
"DEL PEAK 18(7Q36.3) WILD-TYPE" "DEL PEAK 18(7Q36.3) WILD-TYPE" 
                   TCGA-CG-4306                    TCGA-CG-4436 
"DEL PEAK 18(7Q36.3) WILD-TYPE" "DEL PEAK 18(7Q36.3) WILD-TYPE" 
                   TCGA-CG-4437                    TCGA-CG-4438 
  "DEL PEAK 18(7Q36.3) MUTATED"   "DEL PEAK 18(7Q36.3) MUTATED" 
                   TCGA-CG-4440                    TCGA-CG-4441 
"DEL PEAK 18(7Q36.3) WILD-TYPE" "DEL PEAK 18(7Q36.3) WILD-TYPE" 
                   TCGA-CG-4443                    TCGA-CG-4444 
"DEL PEAK 18(7Q36.3) WILD-TYPE" "DEL PEAK 18(7Q36.3) WILD-TYPE" 
                   TCGA-CG-4449                    TCGA-CG-4455 
  "DEL PEAK 18(7Q36.3) MUTATED"   "DEL PEAK 18(7Q36.3) MUTATED" 
                   TCGA-CG-4460                    TCGA-CG-4462 
"DEL PEAK 18(7Q36.3) WILD-TYPE" "DEL PEAK 18(7Q36.3) WILD-TYPE" 
                   TCGA-CG-4465                    TCGA-CG-4466 
"DEL PEAK 18(7Q36.3) WILD-TYPE" "DEL PEAK 18(7Q36.3) WILD-TYPE" 
                   TCGA-CG-4469                    TCGA-CG-4472 
"DEL PEAK 18(7Q36.3) WILD-TYPE"   "DEL PEAK 18(7Q36.3) MUTATED" 
                   TCGA-CG-4474                    TCGA-CG-4477 
"DEL PEAK 18(7Q36.3) WILD-TYPE" "DEL PEAK 18(7Q36.3) WILD-TYPE" 
                   TCGA-CG-5716                    TCGA-CG-5717 
"DEL PEAK 18(7Q36.3) WILD-TYPE" "DEL PEAK 18(7Q36.3) WILD-TYPE" 
                   TCGA-CG-5718                    TCGA-CG-5719 
"DEL PEAK 18(7Q36.3) WILD-TYPE" "DEL PEAK 18(7Q36.3) WILD-TYPE" 
                   TCGA-CG-5720                    TCGA-CG-5721 
"DEL PEAK 18(7Q36.3) WILD-TYPE" "DEL PEAK 18(7Q36.3) WILD-TYPE" 
                   TCGA-CG-5722                    TCGA-CG-5723 
"DEL PEAK 18(7Q36.3) WILD-TYPE" "DEL PEAK 18(7Q36.3) WILD-TYPE" 
                   TCGA-CG-5724                    TCGA-CG-5725 
  "DEL PEAK 18(7Q36.3) MUTATED" "DEL PEAK 18(7Q36.3) WILD-TYPE" 
                   TCGA-CG-5726                    TCGA-CG-5727 
"DEL PEAK 18(7Q36.3) WILD-TYPE" "DEL PEAK 18(7Q36.3) WILD-TYPE" 
                   TCGA-CG-5728                    TCGA-CG-5730 
"DEL PEAK 18(7Q36.3) WILD-TYPE" "DEL PEAK 18(7Q36.3) WILD-TYPE" 
                   TCGA-CG-5732                    TCGA-CG-5733 
"DEL PEAK 18(7Q36.3) WILD-TYPE" "DEL PEAK 18(7Q36.3) WILD-TYPE" 
                   TCGA-CG-5734                    TCGA-D7-5577 
"DEL PEAK 18(7Q36.3) WILD-TYPE" "DEL PEAK 18(7Q36.3) WILD-TYPE" 
                   TCGA-D7-5578                    TCGA-D7-5579 
"DEL PEAK 18(7Q36.3) WILD-TYPE" "DEL PEAK 18(7Q36.3) WILD-TYPE" 
                   TCGA-D7-6518                    TCGA-D7-6519 
"DEL PEAK 18(7Q36.3) WILD-TYPE"   "DEL PEAK 18(7Q36.3) MUTATED" 
                   TCGA-D7-6520                    TCGA-D7-6521 
"DEL PEAK 18(7Q36.3) WILD-TYPE" "DEL PEAK 18(7Q36.3) WILD-TYPE" 
                   TCGA-D7-6522                    TCGA-D7-6524 
"DEL PEAK 18(7Q36.3) WILD-TYPE" "DEL PEAK 18(7Q36.3) WILD-TYPE" 
                   TCGA-D7-6525                    TCGA-D7-6526 
  "DEL PEAK 18(7Q36.3) MUTATED"   "DEL PEAK 18(7Q36.3) MUTATED" 
                   TCGA-D7-6527                    TCGA-D7-6528 
"DEL PEAK 18(7Q36.3) WILD-TYPE" "DEL PEAK 18(7Q36.3) WILD-TYPE" 
                   TCGA-D7-6815                    TCGA-D7-6817 
  "DEL PEAK 18(7Q36.3) MUTATED"   "DEL PEAK 18(7Q36.3) MUTATED" 
                   TCGA-D7-6818                    TCGA-D7-6820 
  "DEL PEAK 18(7Q36.3) MUTATED"   "DEL PEAK 18(7Q36.3) MUTATED" 
                   TCGA-D7-6822                    TCGA-EQ-5647 
"DEL PEAK 18(7Q36.3) WILD-TYPE" "DEL PEAK 18(7Q36.3) WILD-TYPE" 
                   TCGA-EQ-8122                    TCGA-F1-6177 
  "DEL PEAK 18(7Q36.3) MUTATED" "DEL PEAK 18(7Q36.3) WILD-TYPE" 
                   TCGA-F1-6874                    TCGA-F1-6875 
"DEL PEAK 18(7Q36.3) WILD-TYPE" "DEL PEAK 18(7Q36.3) WILD-TYPE" 
                   TCGA-FP-7735                    TCGA-FP-7829 
"DEL PEAK 18(7Q36.3) WILD-TYPE"   "DEL PEAK 18(7Q36.3) MUTATED" 
                   TCGA-FP-7916                    TCGA-FP-7998 
"DEL PEAK 18(7Q36.3) WILD-TYPE" "DEL PEAK 18(7Q36.3) WILD-TYPE" 
                   TCGA-HJ-7597                    TCGA-IN-7806 
"DEL PEAK 18(7Q36.3) WILD-TYPE" "DEL PEAK 18(7Q36.3) WILD-TYPE" 
                   TCGA-IN-7808                    TCGA-IP-7968 
  "DEL PEAK 18(7Q36.3) MUTATED" "DEL PEAK 18(7Q36.3) WILD-TYPE" 
[1] "hr=" "3.1"
D44V2, continuous
D44V3, binary
[1] "tbl2"
                               cls
clus                            [,1] [,2]
  DEL PEAK 18(7Q36.3) MUTATED      9   20
  DEL PEAK 18(7Q36.3) WILD-TYPE   56   76
        clus
vv       DEL PEAK 18(7Q36.3) MUTATED DEL PEAK 18(7Q36.3) WILD-TYPE
  FEMALE                           9                            56
  MALE                            20                            76
D44V4, multiclass
D44V5, multiclass
    clus
vv   DEL PEAK 18(7Q36.3) MUTATED DEL PEAK 18(7Q36.3) WILD-TYPE
  T1                           0                             6
  T2                           9                            44
  T3                          15                            44
  T4                           3                            30
D44V6, multiclass
    clus
vv   DEL PEAK 18(7Q36.3) MUTATED DEL PEAK 18(7Q36.3) WILD-TYPE
  N0                           2                            48
  N1                          16                            41
  N2                           5                            19
  N3                           4                            15
D44V7, multiclass
    clus
vv   DEL PEAK 18(7Q36.3) MUTATED DEL PEAK 18(7Q36.3) WILD-TYPE
  M0                          25                           107
  M1                           3                            15
  MX                           1                            10
D44V8, multiclass
     clus
vv    DEL PEAK 18(7Q36.3) MUTATED DEL PEAK 18(7Q36.3) WILD-TYPE
  I                             0                            25
  II                           11                            32
  III                          11                            37
  IV                            5                            24
D44V9, binary
[1] "tbl2"
                               cls
clus                            [,1] [,2]
  DEL PEAK 18(7Q36.3) MUTATED     28    1
  DEL PEAK 18(7Q36.3) WILD-TYPE  128    4
     clus
vv    DEL PEAK 18(7Q36.3) MUTATED DEL PEAK 18(7Q36.3) WILD-TYPE
  NO                            1                             4
  YES                          28                           128

Clustering(45) Variable = Del Peak 19(8p23.2) mutation analysis
D45V1, survival
                   TCGA-B7-5816                    TCGA-B7-5818 
"DEL PEAK 19(8P23.2) WILD-TYPE" "DEL PEAK 19(8P23.2) WILD-TYPE" 
                   TCGA-BR-6452                    TCGA-BR-6455 
"DEL PEAK 19(8P23.2) WILD-TYPE" "DEL PEAK 19(8P23.2) WILD-TYPE" 
                   TCGA-BR-6457                    TCGA-BR-6458 
  "DEL PEAK 19(8P23.2) MUTATED" "DEL PEAK 19(8P23.2) WILD-TYPE" 
                   TCGA-BR-6563                    TCGA-BR-6564 
"DEL PEAK 19(8P23.2) WILD-TYPE" "DEL PEAK 19(8P23.2) WILD-TYPE" 
                   TCGA-BR-6565                    TCGA-BR-6566 
  "DEL PEAK 19(8P23.2) MUTATED" "DEL PEAK 19(8P23.2) WILD-TYPE" 
                   TCGA-BR-6705                    TCGA-BR-6706 
  "DEL PEAK 19(8P23.2) MUTATED" "DEL PEAK 19(8P23.2) WILD-TYPE" 
                   TCGA-BR-6707                    TCGA-BR-6709 
"DEL PEAK 19(8P23.2) WILD-TYPE"   "DEL PEAK 19(8P23.2) MUTATED" 
                   TCGA-BR-6710                    TCGA-BR-6801 
"DEL PEAK 19(8P23.2) WILD-TYPE" "DEL PEAK 19(8P23.2) WILD-TYPE" 
                   TCGA-BR-6802                    TCGA-BR-6803 
"DEL PEAK 19(8P23.2) WILD-TYPE" "DEL PEAK 19(8P23.2) WILD-TYPE" 
                   TCGA-BR-6852                    TCGA-BR-7196 
"DEL PEAK 19(8P23.2) WILD-TYPE" "DEL PEAK 19(8P23.2) WILD-TYPE" 
                   TCGA-BR-7197                    TCGA-BR-7703 
  "DEL PEAK 19(8P23.2) MUTATED" "DEL PEAK 19(8P23.2) WILD-TYPE" 
                   TCGA-BR-7704                    TCGA-BR-7707 
"DEL PEAK 19(8P23.2) WILD-TYPE" "DEL PEAK 19(8P23.2) WILD-TYPE" 
                   TCGA-BR-7715                    TCGA-BR-7716 
  "DEL PEAK 19(8P23.2) MUTATED"   "DEL PEAK 19(8P23.2) MUTATED" 
                   TCGA-BR-7717                    TCGA-BR-7722 
"DEL PEAK 19(8P23.2) WILD-TYPE" "DEL PEAK 19(8P23.2) WILD-TYPE" 
                   TCGA-BR-7723                    TCGA-BR-7851 
  "DEL PEAK 19(8P23.2) MUTATED" "DEL PEAK 19(8P23.2) WILD-TYPE" 
                   TCGA-BR-7901                    TCGA-BR-7957 
"DEL PEAK 19(8P23.2) WILD-TYPE" "DEL PEAK 19(8P23.2) WILD-TYPE" 
                   TCGA-BR-7958                    TCGA-BR-7959 
"DEL PEAK 19(8P23.2) WILD-TYPE" "DEL PEAK 19(8P23.2) WILD-TYPE" 
                   TCGA-BR-8059                    TCGA-BR-8060 
"DEL PEAK 19(8P23.2) WILD-TYPE" "DEL PEAK 19(8P23.2) WILD-TYPE" 
                   TCGA-BR-8077                    TCGA-BR-8078 
"DEL PEAK 19(8P23.2) WILD-TYPE" "DEL PEAK 19(8P23.2) WILD-TYPE" 
                   TCGA-BR-8080                    TCGA-BR-8081 
"DEL PEAK 19(8P23.2) WILD-TYPE" "DEL PEAK 19(8P23.2) WILD-TYPE" 
                   TCGA-BR-8284                    TCGA-BR-8285 
"DEL PEAK 19(8P23.2) WILD-TYPE" "DEL PEAK 19(8P23.2) WILD-TYPE" 
                   TCGA-BR-8286                    TCGA-BR-8289 
"DEL PEAK 19(8P23.2) WILD-TYPE" "DEL PEAK 19(8P23.2) WILD-TYPE" 
                   TCGA-BR-8291                    TCGA-BR-8295 
"DEL PEAK 19(8P23.2) WILD-TYPE" "DEL PEAK 19(8P23.2) WILD-TYPE" 
                   TCGA-BR-8296                    TCGA-BR-8297 
"DEL PEAK 19(8P23.2) WILD-TYPE" "DEL PEAK 19(8P23.2) WILD-TYPE" 
                   TCGA-CD-5798                    TCGA-CD-5799 
"DEL PEAK 19(8P23.2) WILD-TYPE" "DEL PEAK 19(8P23.2) WILD-TYPE" 
                   TCGA-CD-5800                    TCGA-CD-5801 
  "DEL PEAK 19(8P23.2) MUTATED" "DEL PEAK 19(8P23.2) WILD-TYPE" 
                   TCGA-CD-5802                    TCGA-CD-5803 
  "DEL PEAK 19(8P23.2) MUTATED" "DEL PEAK 19(8P23.2) WILD-TYPE" 
                   TCGA-CG-4300                    TCGA-CG-4301 
"DEL PEAK 19(8P23.2) WILD-TYPE"   "DEL PEAK 19(8P23.2) MUTATED" 
                   TCGA-CG-4304                    TCGA-CG-4305 
"DEL PEAK 19(8P23.2) WILD-TYPE" "DEL PEAK 19(8P23.2) WILD-TYPE" 
                   TCGA-CG-4306                    TCGA-CG-4436 
"DEL PEAK 19(8P23.2) WILD-TYPE"   "DEL PEAK 19(8P23.2) MUTATED" 
                   TCGA-CG-4437                    TCGA-CG-4438 
"DEL PEAK 19(8P23.2) WILD-TYPE"   "DEL PEAK 19(8P23.2) MUTATED" 
                   TCGA-CG-4440                    TCGA-CG-4441 
  "DEL PEAK 19(8P23.2) MUTATED" "DEL PEAK 19(8P23.2) WILD-TYPE" 
                   TCGA-CG-4443                    TCGA-CG-4444 
  "DEL PEAK 19(8P23.2) MUTATED"   "DEL PEAK 19(8P23.2) MUTATED" 
                   TCGA-CG-4449                    TCGA-CG-4455 
  "DEL PEAK 19(8P23.2) MUTATED" "DEL PEAK 19(8P23.2) WILD-TYPE" 
                   TCGA-CG-4460                    TCGA-CG-4462 
"DEL PEAK 19(8P23.2) WILD-TYPE" "DEL PEAK 19(8P23.2) WILD-TYPE" 
                   TCGA-CG-4465                    TCGA-CG-4466 
"DEL PEAK 19(8P23.2) WILD-TYPE" "DEL PEAK 19(8P23.2) WILD-TYPE" 
                   TCGA-CG-4469                    TCGA-CG-4472 
"DEL PEAK 19(8P23.2) WILD-TYPE" "DEL PEAK 19(8P23.2) WILD-TYPE" 
                   TCGA-CG-4474                    TCGA-CG-4477 
"DEL PEAK 19(8P23.2) WILD-TYPE" "DEL PEAK 19(8P23.2) WILD-TYPE" 
                   TCGA-CG-5716                    TCGA-CG-5717 
"DEL PEAK 19(8P23.2) WILD-TYPE" "DEL PEAK 19(8P23.2) WILD-TYPE" 
                   TCGA-CG-5718                    TCGA-CG-5719 
  "DEL PEAK 19(8P23.2) MUTATED" "DEL PEAK 19(8P23.2) WILD-TYPE" 
                   TCGA-CG-5720                    TCGA-CG-5721 
"DEL PEAK 19(8P23.2) WILD-TYPE" "DEL PEAK 19(8P23.2) WILD-TYPE" 
                   TCGA-CG-5722                    TCGA-CG-5723 
"DEL PEAK 19(8P23.2) WILD-TYPE" "DEL PEAK 19(8P23.2) WILD-TYPE" 
                   TCGA-CG-5724                    TCGA-CG-5725 
  "DEL PEAK 19(8P23.2) MUTATED"   "DEL PEAK 19(8P23.2) MUTATED" 
                   TCGA-CG-5726                    TCGA-CG-5727 
"DEL PEAK 19(8P23.2) WILD-TYPE" "DEL PEAK 19(8P23.2) WILD-TYPE" 
                   TCGA-CG-5728                    TCGA-CG-5730 
"DEL PEAK 19(8P23.2) WILD-TYPE"   "DEL PEAK 19(8P23.2) MUTATED" 
                   TCGA-CG-5732                    TCGA-CG-5733 
  "DEL PEAK 19(8P23.2) MUTATED" "DEL PEAK 19(8P23.2) WILD-TYPE" 
                   TCGA-CG-5734                    TCGA-D7-5577 
"DEL PEAK 19(8P23.2) WILD-TYPE" "DEL PEAK 19(8P23.2) WILD-TYPE" 
                   TCGA-D7-5578                    TCGA-D7-5579 
  "DEL PEAK 19(8P23.2) MUTATED" "DEL PEAK 19(8P23.2) WILD-TYPE" 
                   TCGA-D7-6518                    TCGA-D7-6519 
  "DEL PEAK 19(8P23.2) MUTATED" "DEL PEAK 19(8P23.2) WILD-TYPE" 
                   TCGA-D7-6520                    TCGA-D7-6521 
"DEL PEAK 19(8P23.2) WILD-TYPE"   "DEL PEAK 19(8P23.2) MUTATED" 
                   TCGA-D7-6522                    TCGA-D7-6524 
"DEL PEAK 19(8P23.2) WILD-TYPE" "DEL PEAK 19(8P23.2) WILD-TYPE" 
                   TCGA-D7-6525                    TCGA-D7-6526 
"DEL PEAK 19(8P23.2) WILD-TYPE"   "DEL PEAK 19(8P23.2) MUTATED" 
                   TCGA-D7-6527                    TCGA-D7-6528 
"DEL PEAK 19(8P23.2) WILD-TYPE"   "DEL PEAK 19(8P23.2) MUTATED" 
                   TCGA-D7-6815                    TCGA-D7-6817 
"DEL PEAK 19(8P23.2) WILD-TYPE" "DEL PEAK 19(8P23.2) WILD-TYPE" 
                   TCGA-D7-6818                    TCGA-D7-6820 
"DEL PEAK 19(8P23.2) WILD-TYPE"   "DEL PEAK 19(8P23.2) MUTATED" 
                   TCGA-D7-6822                    TCGA-EQ-5647 
"DEL PEAK 19(8P23.2) WILD-TYPE"   "DEL PEAK 19(8P23.2) MUTATED" 
                   TCGA-EQ-8122                    TCGA-F1-6177 
"DEL PEAK 19(8P23.2) WILD-TYPE"   "DEL PEAK 19(8P23.2) MUTATED" 
                   TCGA-F1-6874                    TCGA-F1-6875 
"DEL PEAK 19(8P23.2) WILD-TYPE" "DEL PEAK 19(8P23.2) WILD-TYPE" 
                   TCGA-FP-7735                    TCGA-FP-7829 
"DEL PEAK 19(8P23.2) WILD-TYPE" "DEL PEAK 19(8P23.2) WILD-TYPE" 
                   TCGA-FP-7916                    TCGA-FP-7998 
"DEL PEAK 19(8P23.2) WILD-TYPE" "DEL PEAK 19(8P23.2) WILD-TYPE" 
                   TCGA-HJ-7597                    TCGA-IN-7806 
"DEL PEAK 19(8P23.2) WILD-TYPE" "DEL PEAK 19(8P23.2) WILD-TYPE" 
                   TCGA-IN-7808                    TCGA-IP-7968 
"DEL PEAK 19(8P23.2) WILD-TYPE"   "DEL PEAK 19(8P23.2) MUTATED" 
                   TCGA-B7-5816                    TCGA-B7-5818 
"DEL PEAK 19(8P23.2) WILD-TYPE" "DEL PEAK 19(8P23.2) WILD-TYPE" 
                   TCGA-BR-6452                    TCGA-BR-6455 
"DEL PEAK 19(8P23.2) WILD-TYPE" "DEL PEAK 19(8P23.2) WILD-TYPE" 
                   TCGA-BR-6457                    TCGA-BR-6458 
  "DEL PEAK 19(8P23.2) MUTATED" "DEL PEAK 19(8P23.2) WILD-TYPE" 
                   TCGA-BR-6563                    TCGA-BR-6564 
"DEL PEAK 19(8P23.2) WILD-TYPE" "DEL PEAK 19(8P23.2) WILD-TYPE" 
                   TCGA-BR-6565                    TCGA-BR-6566 
  "DEL PEAK 19(8P23.2) MUTATED" "DEL PEAK 19(8P23.2) WILD-TYPE" 
                   TCGA-BR-6705                    TCGA-BR-6706 
  "DEL PEAK 19(8P23.2) MUTATED" "DEL PEAK 19(8P23.2) WILD-TYPE" 
                   TCGA-BR-6707                    TCGA-BR-6709 
"DEL PEAK 19(8P23.2) WILD-TYPE"   "DEL PEAK 19(8P23.2) MUTATED" 
                   TCGA-BR-6710                    TCGA-BR-6801 
"DEL PEAK 19(8P23.2) WILD-TYPE" "DEL PEAK 19(8P23.2) WILD-TYPE" 
                   TCGA-BR-6802                    TCGA-BR-6803 
"DEL PEAK 19(8P23.2) WILD-TYPE" "DEL PEAK 19(8P23.2) WILD-TYPE" 
                   TCGA-BR-6852                    TCGA-BR-7196 
"DEL PEAK 19(8P23.2) WILD-TYPE" "DEL PEAK 19(8P23.2) WILD-TYPE" 
                   TCGA-BR-7197                    TCGA-BR-7703 
  "DEL PEAK 19(8P23.2) MUTATED" "DEL PEAK 19(8P23.2) WILD-TYPE" 
                   TCGA-BR-7704                    TCGA-BR-7707 
"DEL PEAK 19(8P23.2) WILD-TYPE" "DEL PEAK 19(8P23.2) WILD-TYPE" 
                   TCGA-BR-7715                    TCGA-BR-7716 
  "DEL PEAK 19(8P23.2) MUTATED"   "DEL PEAK 19(8P23.2) MUTATED" 
                   TCGA-BR-7717                    TCGA-BR-7722 
"DEL PEAK 19(8P23.2) WILD-TYPE" "DEL PEAK 19(8P23.2) WILD-TYPE" 
                   TCGA-BR-7723                    TCGA-BR-7851 
  "DEL PEAK 19(8P23.2) MUTATED" "DEL PEAK 19(8P23.2) WILD-TYPE" 
                   TCGA-BR-7901                    TCGA-BR-7957 
"DEL PEAK 19(8P23.2) WILD-TYPE" "DEL PEAK 19(8P23.2) WILD-TYPE" 
                   TCGA-BR-7958                    TCGA-BR-7959 
"DEL PEAK 19(8P23.2) WILD-TYPE" "DEL PEAK 19(8P23.2) WILD-TYPE" 
                   TCGA-BR-8059                    TCGA-BR-8060 
"DEL PEAK 19(8P23.2) WILD-TYPE" "DEL PEAK 19(8P23.2) WILD-TYPE" 
                   TCGA-BR-8077                    TCGA-BR-8078 
"DEL PEAK 19(8P23.2) WILD-TYPE" "DEL PEAK 19(8P23.2) WILD-TYPE" 
                   TCGA-BR-8080                    TCGA-BR-8081 
"DEL PEAK 19(8P23.2) WILD-TYPE" "DEL PEAK 19(8P23.2) WILD-TYPE" 
                   TCGA-BR-8284                    TCGA-BR-8285 
"DEL PEAK 19(8P23.2) WILD-TYPE" "DEL PEAK 19(8P23.2) WILD-TYPE" 
                   TCGA-BR-8286                    TCGA-BR-8289 
"DEL PEAK 19(8P23.2) WILD-TYPE" "DEL PEAK 19(8P23.2) WILD-TYPE" 
                   TCGA-BR-8291                    TCGA-BR-8295 
"DEL PEAK 19(8P23.2) WILD-TYPE" "DEL PEAK 19(8P23.2) WILD-TYPE" 
                   TCGA-BR-8296                    TCGA-BR-8297 
"DEL PEAK 19(8P23.2) WILD-TYPE" "DEL PEAK 19(8P23.2) WILD-TYPE" 
                   TCGA-CD-5798                    TCGA-CD-5799 
"DEL PEAK 19(8P23.2) WILD-TYPE" "DEL PEAK 19(8P23.2) WILD-TYPE" 
                   TCGA-CD-5800                    TCGA-CD-5801 
  "DEL PEAK 19(8P23.2) MUTATED" "DEL PEAK 19(8P23.2) WILD-TYPE" 
                   TCGA-CD-5802                    TCGA-CD-5803 
  "DEL PEAK 19(8P23.2) MUTATED" "DEL PEAK 19(8P23.2) WILD-TYPE" 
                   TCGA-CG-4300                    TCGA-CG-4301 
"DEL PEAK 19(8P23.2) WILD-TYPE"   "DEL PEAK 19(8P23.2) MUTATED" 
                   TCGA-CG-4304                    TCGA-CG-4305 
"DEL PEAK 19(8P23.2) WILD-TYPE" "DEL PEAK 19(8P23.2) WILD-TYPE" 
                   TCGA-CG-4306                    TCGA-CG-4436 
"DEL PEAK 19(8P23.2) WILD-TYPE"   "DEL PEAK 19(8P23.2) MUTATED" 
                   TCGA-CG-4437                    TCGA-CG-4438 
"DEL PEAK 19(8P23.2) WILD-TYPE"   "DEL PEAK 19(8P23.2) MUTATED" 
                   TCGA-CG-4440                    TCGA-CG-4441 
  "DEL PEAK 19(8P23.2) MUTATED" "DEL PEAK 19(8P23.2) WILD-TYPE" 
                   TCGA-CG-4443                    TCGA-CG-4444 
  "DEL PEAK 19(8P23.2) MUTATED"   "DEL PEAK 19(8P23.2) MUTATED" 
                   TCGA-CG-4449                    TCGA-CG-4455 
  "DEL PEAK 19(8P23.2) MUTATED" "DEL PEAK 19(8P23.2) WILD-TYPE" 
                   TCGA-CG-4460                    TCGA-CG-4462 
"DEL PEAK 19(8P23.2) WILD-TYPE" "DEL PEAK 19(8P23.2) WILD-TYPE" 
                   TCGA-CG-4465                    TCGA-CG-4466 
"DEL PEAK 19(8P23.2) WILD-TYPE" "DEL PEAK 19(8P23.2) WILD-TYPE" 
                   TCGA-CG-4469                    TCGA-CG-4472 
"DEL PEAK 19(8P23.2) WILD-TYPE" "DEL PEAK 19(8P23.2) WILD-TYPE" 
                   TCGA-CG-4474                    TCGA-CG-4477 
"DEL PEAK 19(8P23.2) WILD-TYPE" "DEL PEAK 19(8P23.2) WILD-TYPE" 
                   TCGA-CG-5716                    TCGA-CG-5717 
"DEL PEAK 19(8P23.2) WILD-TYPE" "DEL PEAK 19(8P23.2) WILD-TYPE" 
                   TCGA-CG-5718                    TCGA-CG-5719 
  "DEL PEAK 19(8P23.2) MUTATED" "DEL PEAK 19(8P23.2) WILD-TYPE" 
                   TCGA-CG-5720                    TCGA-CG-5721 
"DEL PEAK 19(8P23.2) WILD-TYPE" "DEL PEAK 19(8P23.2) WILD-TYPE" 
                   TCGA-CG-5722                    TCGA-CG-5723 
"DEL PEAK 19(8P23.2) WILD-TYPE" "DEL PEAK 19(8P23.2) WILD-TYPE" 
                   TCGA-CG-5724                    TCGA-CG-5725 
  "DEL PEAK 19(8P23.2) MUTATED"   "DEL PEAK 19(8P23.2) MUTATED" 
                   TCGA-CG-5726                    TCGA-CG-5727 
"DEL PEAK 19(8P23.2) WILD-TYPE" "DEL PEAK 19(8P23.2) WILD-TYPE" 
                   TCGA-CG-5728                    TCGA-CG-5730 
"DEL PEAK 19(8P23.2) WILD-TYPE"   "DEL PEAK 19(8P23.2) MUTATED" 
                   TCGA-CG-5732                    TCGA-CG-5733 
  "DEL PEAK 19(8P23.2) MUTATED" "DEL PEAK 19(8P23.2) WILD-TYPE" 
                   TCGA-CG-5734                    TCGA-D7-5577 
"DEL PEAK 19(8P23.2) WILD-TYPE" "DEL PEAK 19(8P23.2) WILD-TYPE" 
                   TCGA-D7-5578                    TCGA-D7-5579 
  "DEL PEAK 19(8P23.2) MUTATED" "DEL PEAK 19(8P23.2) WILD-TYPE" 
                   TCGA-D7-6518                    TCGA-D7-6519 
  "DEL PEAK 19(8P23.2) MUTATED" "DEL PEAK 19(8P23.2) WILD-TYPE" 
                   TCGA-D7-6520                    TCGA-D7-6521 
"DEL PEAK 19(8P23.2) WILD-TYPE"   "DEL PEAK 19(8P23.2) MUTATED" 
                   TCGA-D7-6522                    TCGA-D7-6524 
"DEL PEAK 19(8P23.2) WILD-TYPE" "DEL PEAK 19(8P23.2) WILD-TYPE" 
                   TCGA-D7-6525                    TCGA-D7-6526 
"DEL PEAK 19(8P23.2) WILD-TYPE"   "DEL PEAK 19(8P23.2) MUTATED" 
                   TCGA-D7-6527                    TCGA-D7-6528 
"DEL PEAK 19(8P23.2) WILD-TYPE"   "DEL PEAK 19(8P23.2) MUTATED" 
                   TCGA-D7-6815                    TCGA-D7-6817 
"DEL PEAK 19(8P23.2) WILD-TYPE" "DEL PEAK 19(8P23.2) WILD-TYPE" 
                   TCGA-D7-6818                    TCGA-D7-6820 
"DEL PEAK 19(8P23.2) WILD-TYPE"   "DEL PEAK 19(8P23.2) MUTATED" 
                   TCGA-D7-6822                    TCGA-EQ-5647 
"DEL PEAK 19(8P23.2) WILD-TYPE"   "DEL PEAK 19(8P23.2) MUTATED" 
                   TCGA-EQ-8122                    TCGA-F1-6177 
"DEL PEAK 19(8P23.2) WILD-TYPE"   "DEL PEAK 19(8P23.2) MUTATED" 
                   TCGA-F1-6874                    TCGA-F1-6875 
"DEL PEAK 19(8P23.2) WILD-TYPE" "DEL PEAK 19(8P23.2) WILD-TYPE" 
                   TCGA-FP-7735                    TCGA-FP-7829 
"DEL PEAK 19(8P23.2) WILD-TYPE" "DEL PEAK 19(8P23.2) WILD-TYPE" 
                   TCGA-FP-7916                    TCGA-FP-7998 
"DEL PEAK 19(8P23.2) WILD-TYPE" "DEL PEAK 19(8P23.2) WILD-TYPE" 
                   TCGA-HJ-7597                    TCGA-IN-7806 
"DEL PEAK 19(8P23.2) WILD-TYPE" "DEL PEAK 19(8P23.2) WILD-TYPE" 
                   TCGA-IN-7808                    TCGA-IP-7968 
"DEL PEAK 19(8P23.2) WILD-TYPE"   "DEL PEAK 19(8P23.2) MUTATED" 
                   TCGA-B7-5816                    TCGA-B7-5818 
"DEL PEAK 19(8P23.2) WILD-TYPE" "DEL PEAK 19(8P23.2) WILD-TYPE" 
                   TCGA-BR-6452                    TCGA-BR-6455 
"DEL PEAK 19(8P23.2) WILD-TYPE" "DEL PEAK 19(8P23.2) WILD-TYPE" 
                   TCGA-BR-6457                    TCGA-BR-6458 
  "DEL PEAK 19(8P23.2) MUTATED" "DEL PEAK 19(8P23.2) WILD-TYPE" 
                   TCGA-BR-6563                    TCGA-BR-6564 
"DEL PEAK 19(8P23.2) WILD-TYPE" "DEL PEAK 19(8P23.2) WILD-TYPE" 
                   TCGA-BR-6565                    TCGA-BR-6566 
  "DEL PEAK 19(8P23.2) MUTATED" "DEL PEAK 19(8P23.2) WILD-TYPE" 
                   TCGA-BR-6705                    TCGA-BR-6706 
  "DEL PEAK 19(8P23.2) MUTATED" "DEL PEAK 19(8P23.2) WILD-TYPE" 
                   TCGA-BR-6707                    TCGA-BR-6709 
"DEL PEAK 19(8P23.2) WILD-TYPE"   "DEL PEAK 19(8P23.2) MUTATED" 
                   TCGA-BR-6710                    TCGA-BR-6801 
"DEL PEAK 19(8P23.2) WILD-TYPE" "DEL PEAK 19(8P23.2) WILD-TYPE" 
                   TCGA-BR-6802                    TCGA-BR-6803 
"DEL PEAK 19(8P23.2) WILD-TYPE" "DEL PEAK 19(8P23.2) WILD-TYPE" 
                   TCGA-BR-6852                    TCGA-BR-7196 
"DEL PEAK 19(8P23.2) WILD-TYPE" "DEL PEAK 19(8P23.2) WILD-TYPE" 
                   TCGA-BR-7197                    TCGA-BR-7703 
  "DEL PEAK 19(8P23.2) MUTATED" "DEL PEAK 19(8P23.2) WILD-TYPE" 
                   TCGA-BR-7704                    TCGA-BR-7707 
"DEL PEAK 19(8P23.2) WILD-TYPE" "DEL PEAK 19(8P23.2) WILD-TYPE" 
                   TCGA-BR-7715                    TCGA-BR-7716 
  "DEL PEAK 19(8P23.2) MUTATED"   "DEL PEAK 19(8P23.2) MUTATED" 
                   TCGA-BR-7717                    TCGA-BR-7722 
"DEL PEAK 19(8P23.2) WILD-TYPE" "DEL PEAK 19(8P23.2) WILD-TYPE" 
                   TCGA-BR-7723                    TCGA-BR-7851 
  "DEL PEAK 19(8P23.2) MUTATED" "DEL PEAK 19(8P23.2) WILD-TYPE" 
                   TCGA-BR-7901                    TCGA-BR-7957 
"DEL PEAK 19(8P23.2) WILD-TYPE" "DEL PEAK 19(8P23.2) WILD-TYPE" 
                   TCGA-BR-7958                    TCGA-BR-7959 
"DEL PEAK 19(8P23.2) WILD-TYPE" "DEL PEAK 19(8P23.2) WILD-TYPE" 
                   TCGA-BR-8059                    TCGA-BR-8060 
"DEL PEAK 19(8P23.2) WILD-TYPE" "DEL PEAK 19(8P23.2) WILD-TYPE" 
                   TCGA-BR-8077                    TCGA-BR-8078 
"DEL PEAK 19(8P23.2) WILD-TYPE" "DEL PEAK 19(8P23.2) WILD-TYPE" 
                   TCGA-BR-8080                    TCGA-BR-8081 
"DEL PEAK 19(8P23.2) WILD-TYPE" "DEL PEAK 19(8P23.2) WILD-TYPE" 
                   TCGA-BR-8284                    TCGA-BR-8285 
"DEL PEAK 19(8P23.2) WILD-TYPE" "DEL PEAK 19(8P23.2) WILD-TYPE" 
                   TCGA-BR-8286                    TCGA-BR-8289 
"DEL PEAK 19(8P23.2) WILD-TYPE" "DEL PEAK 19(8P23.2) WILD-TYPE" 
                   TCGA-BR-8291                    TCGA-BR-8295 
"DEL PEAK 19(8P23.2) WILD-TYPE" "DEL PEAK 19(8P23.2) WILD-TYPE" 
                   TCGA-BR-8296                    TCGA-BR-8297 
"DEL PEAK 19(8P23.2) WILD-TYPE" "DEL PEAK 19(8P23.2) WILD-TYPE" 
                   TCGA-CD-5798                    TCGA-CD-5799 
"DEL PEAK 19(8P23.2) WILD-TYPE" "DEL PEAK 19(8P23.2) WILD-TYPE" 
                   TCGA-CD-5800                    TCGA-CD-5801 
  "DEL PEAK 19(8P23.2) MUTATED" "DEL PEAK 19(8P23.2) WILD-TYPE" 
                   TCGA-CD-5802                    TCGA-CD-5803 
  "DEL PEAK 19(8P23.2) MUTATED" "DEL PEAK 19(8P23.2) WILD-TYPE" 
                   TCGA-CG-4300                    TCGA-CG-4301 
"DEL PEAK 19(8P23.2) WILD-TYPE"   "DEL PEAK 19(8P23.2) MUTATED" 
                   TCGA-CG-4304                    TCGA-CG-4305 
"DEL PEAK 19(8P23.2) WILD-TYPE" "DEL PEAK 19(8P23.2) WILD-TYPE" 
                   TCGA-CG-4306                    TCGA-CG-4436 
"DEL PEAK 19(8P23.2) WILD-TYPE"   "DEL PEAK 19(8P23.2) MUTATED" 
                   TCGA-CG-4437                    TCGA-CG-4438 
"DEL PEAK 19(8P23.2) WILD-TYPE"   "DEL PEAK 19(8P23.2) MUTATED" 
                   TCGA-CG-4440                    TCGA-CG-4441 
  "DEL PEAK 19(8P23.2) MUTATED" "DEL PEAK 19(8P23.2) WILD-TYPE" 
                   TCGA-CG-4443                    TCGA-CG-4444 
  "DEL PEAK 19(8P23.2) MUTATED"   "DEL PEAK 19(8P23.2) MUTATED" 
                   TCGA-CG-4449                    TCGA-CG-4455 
  "DEL PEAK 19(8P23.2) MUTATED" "DEL PEAK 19(8P23.2) WILD-TYPE" 
                   TCGA-CG-4460                    TCGA-CG-4462 
"DEL PEAK 19(8P23.2) WILD-TYPE" "DEL PEAK 19(8P23.2) WILD-TYPE" 
                   TCGA-CG-4465                    TCGA-CG-4466 
"DEL PEAK 19(8P23.2) WILD-TYPE" "DEL PEAK 19(8P23.2) WILD-TYPE" 
                   TCGA-CG-4469                    TCGA-CG-4472 
"DEL PEAK 19(8P23.2) WILD-TYPE" "DEL PEAK 19(8P23.2) WILD-TYPE" 
                   TCGA-CG-4474                    TCGA-CG-4477 
"DEL PEAK 19(8P23.2) WILD-TYPE" "DEL PEAK 19(8P23.2) WILD-TYPE" 
                   TCGA-CG-5716                    TCGA-CG-5717 
"DEL PEAK 19(8P23.2) WILD-TYPE" "DEL PEAK 19(8P23.2) WILD-TYPE" 
                   TCGA-CG-5718                    TCGA-CG-5719 
  "DEL PEAK 19(8P23.2) MUTATED" "DEL PEAK 19(8P23.2) WILD-TYPE" 
                   TCGA-CG-5720                    TCGA-CG-5721 
"DEL PEAK 19(8P23.2) WILD-TYPE" "DEL PEAK 19(8P23.2) WILD-TYPE" 
                   TCGA-CG-5722                    TCGA-CG-5723 
"DEL PEAK 19(8P23.2) WILD-TYPE" "DEL PEAK 19(8P23.2) WILD-TYPE" 
                   TCGA-CG-5724                    TCGA-CG-5725 
  "DEL PEAK 19(8P23.2) MUTATED"   "DEL PEAK 19(8P23.2) MUTATED" 
                   TCGA-CG-5726                    TCGA-CG-5727 
"DEL PEAK 19(8P23.2) WILD-TYPE" "DEL PEAK 19(8P23.2) WILD-TYPE" 
                   TCGA-CG-5728                    TCGA-CG-5730 
"DEL PEAK 19(8P23.2) WILD-TYPE"   "DEL PEAK 19(8P23.2) MUTATED" 
                   TCGA-CG-5732                    TCGA-CG-5733 
  "DEL PEAK 19(8P23.2) MUTATED" "DEL PEAK 19(8P23.2) WILD-TYPE" 
                   TCGA-CG-5734                    TCGA-D7-5577 
"DEL PEAK 19(8P23.2) WILD-TYPE" "DEL PEAK 19(8P23.2) WILD-TYPE" 
                   TCGA-D7-5578                    TCGA-D7-5579 
  "DEL PEAK 19(8P23.2) MUTATED" "DEL PEAK 19(8P23.2) WILD-TYPE" 
                   TCGA-D7-6518                    TCGA-D7-6519 
  "DEL PEAK 19(8P23.2) MUTATED" "DEL PEAK 19(8P23.2) WILD-TYPE" 
                   TCGA-D7-6520                    TCGA-D7-6521 
"DEL PEAK 19(8P23.2) WILD-TYPE"   "DEL PEAK 19(8P23.2) MUTATED" 
                   TCGA-D7-6522                    TCGA-D7-6524 
"DEL PEAK 19(8P23.2) WILD-TYPE" "DEL PEAK 19(8P23.2) WILD-TYPE" 
                   TCGA-D7-6525                    TCGA-D7-6526 
"DEL PEAK 19(8P23.2) WILD-TYPE"   "DEL PEAK 19(8P23.2) MUTATED" 
                   TCGA-D7-6527                    TCGA-D7-6528 
"DEL PEAK 19(8P23.2) WILD-TYPE"   "DEL PEAK 19(8P23.2) MUTATED" 
                   TCGA-D7-6815                    TCGA-D7-6817 
"DEL PEAK 19(8P23.2) WILD-TYPE" "DEL PEAK 19(8P23.2) WILD-TYPE" 
                   TCGA-D7-6818                    TCGA-D7-6820 
"DEL PEAK 19(8P23.2) WILD-TYPE"   "DEL PEAK 19(8P23.2) MUTATED" 
                   TCGA-D7-6822                    TCGA-EQ-5647 
"DEL PEAK 19(8P23.2) WILD-TYPE"   "DEL PEAK 19(8P23.2) MUTATED" 
                   TCGA-EQ-8122                    TCGA-F1-6177 
"DEL PEAK 19(8P23.2) WILD-TYPE"   "DEL PEAK 19(8P23.2) MUTATED" 
                   TCGA-F1-6874                    TCGA-F1-6875 
"DEL PEAK 19(8P23.2) WILD-TYPE" "DEL PEAK 19(8P23.2) WILD-TYPE" 
                   TCGA-FP-7735                    TCGA-FP-7829 
"DEL PEAK 19(8P23.2) WILD-TYPE" "DEL PEAK 19(8P23.2) WILD-TYPE" 
                   TCGA-FP-7916                    TCGA-FP-7998 
"DEL PEAK 19(8P23.2) WILD-TYPE" "DEL PEAK 19(8P23.2) WILD-TYPE" 
                   TCGA-HJ-7597                    TCGA-IN-7806 
"DEL PEAK 19(8P23.2) WILD-TYPE" "DEL PEAK 19(8P23.2) WILD-TYPE" 
                   TCGA-IN-7808                    TCGA-IP-7968 
"DEL PEAK 19(8P23.2) WILD-TYPE"   "DEL PEAK 19(8P23.2) MUTATED" 
[1] "hr=" "1.4"
D45V2, continuous
D45V3, binary
[1] "tbl2"
                               cls
clus                            [,1] [,2]
  DEL PEAK 19(8P23.2) MUTATED     13   27
  DEL PEAK 19(8P23.2) WILD-TYPE   52   69
        clus
vv       DEL PEAK 19(8P23.2) MUTATED DEL PEAK 19(8P23.2) WILD-TYPE
  FEMALE                          13                            52
  MALE                            27                            69
D45V4, multiclass
D45V5, multiclass
    clus
vv   DEL PEAK 19(8P23.2) MUTATED DEL PEAK 19(8P23.2) WILD-TYPE
  T1                           2                             4
  T2                          13                            40
  T3                          18                            41
  T4                           5                            28
D45V6, multiclass
    clus
vv   DEL PEAK 19(8P23.2) MUTATED DEL PEAK 19(8P23.2) WILD-TYPE
  N0                          10                            40
  N1                          12                            45
  N2                           9                            15
  N3                           7                            12
D45V7, multiclass
    clus
vv   DEL PEAK 19(8P23.2) MUTATED DEL PEAK 19(8P23.2) WILD-TYPE
  M0                          33                            99
  M1                           5                            13
  MX                           2                             9
D45V8, multiclass
     clus
vv    DEL PEAK 19(8P23.2) MUTATED DEL PEAK 19(8P23.2) WILD-TYPE
  I                             5                            20
  II                           13                            30
  III                           9                            39
  IV                           10                            19
D45V9, binary
[1] "tbl2"
                               cls
clus                            [,1] [,2]
  DEL PEAK 19(8P23.2) MUTATED     39    1
  DEL PEAK 19(8P23.2) WILD-TYPE  117    4
     clus
vv    DEL PEAK 19(8P23.2) MUTATED DEL PEAK 19(8P23.2) WILD-TYPE
  NO                            1                             4
  YES                          39                           117

Clustering(46) Variable = Del Peak 20(9p23) mutation analysis
D46V1, survival
                 TCGA-B7-5816                  TCGA-B7-5818 
  "DEL PEAK 20(9P23) MUTATED" "DEL PEAK 20(9P23) WILD-TYPE" 
                 TCGA-BR-6452                  TCGA-BR-6455 
"DEL PEAK 20(9P23) WILD-TYPE" "DEL PEAK 20(9P23) WILD-TYPE" 
                 TCGA-BR-6457                  TCGA-BR-6458 
  "DEL PEAK 20(9P23) MUTATED"   "DEL PEAK 20(9P23) MUTATED" 
                 TCGA-BR-6563                  TCGA-BR-6564 
"DEL PEAK 20(9P23) WILD-TYPE" "DEL PEAK 20(9P23) WILD-TYPE" 
                 TCGA-BR-6565                  TCGA-BR-6566 
"DEL PEAK 20(9P23) WILD-TYPE" "DEL PEAK 20(9P23) WILD-TYPE" 
                 TCGA-BR-6705                  TCGA-BR-6706 
"DEL PEAK 20(9P23) WILD-TYPE" "DEL PEAK 20(9P23) WILD-TYPE" 
                 TCGA-BR-6707                  TCGA-BR-6709 
  "DEL PEAK 20(9P23) MUTATED"   "DEL PEAK 20(9P23) MUTATED" 
                 TCGA-BR-6710                  TCGA-BR-6801 
"DEL PEAK 20(9P23) WILD-TYPE" "DEL PEAK 20(9P23) WILD-TYPE" 
                 TCGA-BR-6802                  TCGA-BR-6803 
"DEL PEAK 20(9P23) WILD-TYPE"   "DEL PEAK 20(9P23) MUTATED" 
                 TCGA-BR-6852                  TCGA-BR-7196 
"DEL PEAK 20(9P23) WILD-TYPE" "DEL PEAK 20(9P23) WILD-TYPE" 
                 TCGA-BR-7197                  TCGA-BR-7703 
  "DEL PEAK 20(9P23) MUTATED" "DEL PEAK 20(9P23) WILD-TYPE" 
                 TCGA-BR-7704                  TCGA-BR-7707 
"DEL PEAK 20(9P23) WILD-TYPE" "DEL PEAK 20(9P23) WILD-TYPE" 
                 TCGA-BR-7715                  TCGA-BR-7716 
  "DEL PEAK 20(9P23) MUTATED"   "DEL PEAK 20(9P23) MUTATED" 
                 TCGA-BR-7717                  TCGA-BR-7722 
  "DEL PEAK 20(9P23) MUTATED"   "DEL PEAK 20(9P23) MUTATED" 
                 TCGA-BR-7723                  TCGA-BR-7851 
  "DEL PEAK 20(9P23) MUTATED" "DEL PEAK 20(9P23) WILD-TYPE" 
                 TCGA-BR-7901                  TCGA-BR-7957 
  "DEL PEAK 20(9P23) MUTATED" "DEL PEAK 20(9P23) WILD-TYPE" 
                 TCGA-BR-7958                  TCGA-BR-7959 
"DEL PEAK 20(9P23) WILD-TYPE" "DEL PEAK 20(9P23) WILD-TYPE" 
                 TCGA-BR-8059                  TCGA-BR-8060 
"DEL PEAK 20(9P23) WILD-TYPE" "DEL PEAK 20(9P23) WILD-TYPE" 
                 TCGA-BR-8077                  TCGA-BR-8078 
"DEL PEAK 20(9P23) WILD-TYPE" "DEL PEAK 20(9P23) WILD-TYPE" 
                 TCGA-BR-8080                  TCGA-BR-8081 
"DEL PEAK 20(9P23) WILD-TYPE" "DEL PEAK 20(9P23) WILD-TYPE" 
                 TCGA-BR-8284                  TCGA-BR-8285 
"DEL PEAK 20(9P23) WILD-TYPE" "DEL PEAK 20(9P23) WILD-TYPE" 
                 TCGA-BR-8286                  TCGA-BR-8289 
"DEL PEAK 20(9P23) WILD-TYPE" "DEL PEAK 20(9P23) WILD-TYPE" 
                 TCGA-BR-8291                  TCGA-BR-8295 
"DEL PEAK 20(9P23) WILD-TYPE" "DEL PEAK 20(9P23) WILD-TYPE" 
                 TCGA-BR-8296                  TCGA-BR-8297 
"DEL PEAK 20(9P23) WILD-TYPE" "DEL PEAK 20(9P23) WILD-TYPE" 
                 TCGA-CD-5798                  TCGA-CD-5799 
"DEL PEAK 20(9P23) WILD-TYPE"   "DEL PEAK 20(9P23) MUTATED" 
                 TCGA-CD-5800                  TCGA-CD-5801 
  "DEL PEAK 20(9P23) MUTATED" "DEL PEAK 20(9P23) WILD-TYPE" 
                 TCGA-CD-5802                  TCGA-CD-5803 
"DEL PEAK 20(9P23) WILD-TYPE"   "DEL PEAK 20(9P23) MUTATED" 
                 TCGA-CG-4300                  TCGA-CG-4301 
"DEL PEAK 20(9P23) WILD-TYPE"   "DEL PEAK 20(9P23) MUTATED" 
                 TCGA-CG-4304                  TCGA-CG-4305 
"DEL PEAK 20(9P23) WILD-TYPE" "DEL PEAK 20(9P23) WILD-TYPE" 
                 TCGA-CG-4306                  TCGA-CG-4436 
"DEL PEAK 20(9P23) WILD-TYPE" "DEL PEAK 20(9P23) WILD-TYPE" 
                 TCGA-CG-4437                  TCGA-CG-4438 
  "DEL PEAK 20(9P23) MUTATED"   "DEL PEAK 20(9P23) MUTATED" 
                 TCGA-CG-4440                  TCGA-CG-4441 
  "DEL PEAK 20(9P23) MUTATED" "DEL PEAK 20(9P23) WILD-TYPE" 
                 TCGA-CG-4443                  TCGA-CG-4444 
  "DEL PEAK 20(9P23) MUTATED"   "DEL PEAK 20(9P23) MUTATED" 
                 TCGA-CG-4449                  TCGA-CG-4455 
  "DEL PEAK 20(9P23) MUTATED"   "DEL PEAK 20(9P23) MUTATED" 
                 TCGA-CG-4460                  TCGA-CG-4462 
"DEL PEAK 20(9P23) WILD-TYPE" "DEL PEAK 20(9P23) WILD-TYPE" 
                 TCGA-CG-4465                  TCGA-CG-4466 
"DEL PEAK 20(9P23) WILD-TYPE"   "DEL PEAK 20(9P23) MUTATED" 
                 TCGA-CG-4469                  TCGA-CG-4472 
"DEL PEAK 20(9P23) WILD-TYPE"   "DEL PEAK 20(9P23) MUTATED" 
                 TCGA-CG-4474                  TCGA-CG-4477 
"DEL PEAK 20(9P23) WILD-TYPE" "DEL PEAK 20(9P23) WILD-TYPE" 
                 TCGA-CG-5716                  TCGA-CG-5717 
"DEL PEAK 20(9P23) WILD-TYPE" "DEL PEAK 20(9P23) WILD-TYPE" 
                 TCGA-CG-5718                  TCGA-CG-5719 
  "DEL PEAK 20(9P23) MUTATED"   "DEL PEAK 20(9P23) MUTATED" 
                 TCGA-CG-5720                  TCGA-CG-5721 
"DEL PEAK 20(9P23) WILD-TYPE" "DEL PEAK 20(9P23) WILD-TYPE" 
                 TCGA-CG-5722                  TCGA-CG-5723 
"DEL PEAK 20(9P23) WILD-TYPE"   "DEL PEAK 20(9P23) MUTATED" 
                 TCGA-CG-5724                  TCGA-CG-5725 
  "DEL PEAK 20(9P23) MUTATED" "DEL PEAK 20(9P23) WILD-TYPE" 
                 TCGA-CG-5726                  TCGA-CG-5727 
"DEL PEAK 20(9P23) WILD-TYPE" "DEL PEAK 20(9P23) WILD-TYPE" 
                 TCGA-CG-5728                  TCGA-CG-5730 
"DEL PEAK 20(9P23) WILD-TYPE"   "DEL PEAK 20(9P23) MUTATED" 
                 TCGA-CG-5732                  TCGA-CG-5733 
  "DEL PEAK 20(9P23) MUTATED" "DEL PEAK 20(9P23) WILD-TYPE" 
                 TCGA-CG-5734                  TCGA-D7-5577 
"DEL PEAK 20(9P23) WILD-TYPE"   "DEL PEAK 20(9P23) MUTATED" 
                 TCGA-D7-5578                  TCGA-D7-5579 
  "DEL PEAK 20(9P23) MUTATED"   "DEL PEAK 20(9P23) MUTATED" 
                 TCGA-D7-6518                  TCGA-D7-6519 
  "DEL PEAK 20(9P23) MUTATED"   "DEL PEAK 20(9P23) MUTATED" 
                 TCGA-D7-6520                  TCGA-D7-6521 
  "DEL PEAK 20(9P23) MUTATED"   "DEL PEAK 20(9P23) MUTATED" 
                 TCGA-D7-6522                  TCGA-D7-6524 
"DEL PEAK 20(9P23) WILD-TYPE" "DEL PEAK 20(9P23) WILD-TYPE" 
                 TCGA-D7-6525                  TCGA-D7-6526 
  "DEL PEAK 20(9P23) MUTATED"   "DEL PEAK 20(9P23) MUTATED" 
                 TCGA-D7-6527                  TCGA-D7-6528 
  "DEL PEAK 20(9P23) MUTATED" "DEL PEAK 20(9P23) WILD-TYPE" 
                 TCGA-D7-6815                  TCGA-D7-6817 
  "DEL PEAK 20(9P23) MUTATED"   "DEL PEAK 20(9P23) MUTATED" 
                 TCGA-D7-6818                  TCGA-D7-6820 
"DEL PEAK 20(9P23) WILD-TYPE"   "DEL PEAK 20(9P23) MUTATED" 
                 TCGA-D7-6822                  TCGA-EQ-5647 
"DEL PEAK 20(9P23) WILD-TYPE" "DEL PEAK 20(9P23) WILD-TYPE" 
                 TCGA-EQ-8122                  TCGA-F1-6177 
  "DEL PEAK 20(9P23) MUTATED" "DEL PEAK 20(9P23) WILD-TYPE" 
                 TCGA-F1-6874                  TCGA-F1-6875 
"DEL PEAK 20(9P23) WILD-TYPE" "DEL PEAK 20(9P23) WILD-TYPE" 
                 TCGA-FP-7735                  TCGA-FP-7829 
"DEL PEAK 20(9P23) WILD-TYPE"   "DEL PEAK 20(9P23) MUTATED" 
                 TCGA-FP-7916                  TCGA-FP-7998 
  "DEL PEAK 20(9P23) MUTATED" "DEL PEAK 20(9P23) WILD-TYPE" 
                 TCGA-HJ-7597                  TCGA-IN-7806 
"DEL PEAK 20(9P23) WILD-TYPE"   "DEL PEAK 20(9P23) MUTATED" 
                 TCGA-IN-7808                  TCGA-IP-7968 
"DEL PEAK 20(9P23) WILD-TYPE" "DEL PEAK 20(9P23) WILD-TYPE" 
                 TCGA-B7-5816                  TCGA-B7-5818 
  "DEL PEAK 20(9P23) MUTATED" "DEL PEAK 20(9P23) WILD-TYPE" 
                 TCGA-BR-6452                  TCGA-BR-6455 
"DEL PEAK 20(9P23) WILD-TYPE" "DEL PEAK 20(9P23) WILD-TYPE" 
                 TCGA-BR-6457                  TCGA-BR-6458 
  "DEL PEAK 20(9P23) MUTATED"   "DEL PEAK 20(9P23) MUTATED" 
                 TCGA-BR-6563                  TCGA-BR-6564 
"DEL PEAK 20(9P23) WILD-TYPE" "DEL PEAK 20(9P23) WILD-TYPE" 
                 TCGA-BR-6565                  TCGA-BR-6566 
"DEL PEAK 20(9P23) WILD-TYPE" "DEL PEAK 20(9P23) WILD-TYPE" 
                 TCGA-BR-6705                  TCGA-BR-6706 
"DEL PEAK 20(9P23) WILD-TYPE" "DEL PEAK 20(9P23) WILD-TYPE" 
                 TCGA-BR-6707                  TCGA-BR-6709 
  "DEL PEAK 20(9P23) MUTATED"   "DEL PEAK 20(9P23) MUTATED" 
                 TCGA-BR-6710                  TCGA-BR-6801 
"DEL PEAK 20(9P23) WILD-TYPE" "DEL PEAK 20(9P23) WILD-TYPE" 
                 TCGA-BR-6802                  TCGA-BR-6803 
"DEL PEAK 20(9P23) WILD-TYPE"   "DEL PEAK 20(9P23) MUTATED" 
                 TCGA-BR-6852                  TCGA-BR-7196 
"DEL PEAK 20(9P23) WILD-TYPE" "DEL PEAK 20(9P23) WILD-TYPE" 
                 TCGA-BR-7197                  TCGA-BR-7703 
  "DEL PEAK 20(9P23) MUTATED" "DEL PEAK 20(9P23) WILD-TYPE" 
                 TCGA-BR-7704                  TCGA-BR-7707 
"DEL PEAK 20(9P23) WILD-TYPE" "DEL PEAK 20(9P23) WILD-TYPE" 
                 TCGA-BR-7715                  TCGA-BR-7716 
  "DEL PEAK 20(9P23) MUTATED"   "DEL PEAK 20(9P23) MUTATED" 
                 TCGA-BR-7717                  TCGA-BR-7722 
  "DEL PEAK 20(9P23) MUTATED"   "DEL PEAK 20(9P23) MUTATED" 
                 TCGA-BR-7723                  TCGA-BR-7851 
  "DEL PEAK 20(9P23) MUTATED" "DEL PEAK 20(9P23) WILD-TYPE" 
                 TCGA-BR-7901                  TCGA-BR-7957 
  "DEL PEAK 20(9P23) MUTATED" "DEL PEAK 20(9P23) WILD-TYPE" 
                 TCGA-BR-7958                  TCGA-BR-7959 
"DEL PEAK 20(9P23) WILD-TYPE" "DEL PEAK 20(9P23) WILD-TYPE" 
                 TCGA-BR-8059                  TCGA-BR-8060 
"DEL PEAK 20(9P23) WILD-TYPE" "DEL PEAK 20(9P23) WILD-TYPE" 
                 TCGA-BR-8077                  TCGA-BR-8078 
"DEL PEAK 20(9P23) WILD-TYPE" "DEL PEAK 20(9P23) WILD-TYPE" 
                 TCGA-BR-8080                  TCGA-BR-8081 
"DEL PEAK 20(9P23) WILD-TYPE" "DEL PEAK 20(9P23) WILD-TYPE" 
                 TCGA-BR-8284                  TCGA-BR-8285 
"DEL PEAK 20(9P23) WILD-TYPE" "DEL PEAK 20(9P23) WILD-TYPE" 
                 TCGA-BR-8286                  TCGA-BR-8289 
"DEL PEAK 20(9P23) WILD-TYPE" "DEL PEAK 20(9P23) WILD-TYPE" 
                 TCGA-BR-8291                  TCGA-BR-8295 
"DEL PEAK 20(9P23) WILD-TYPE" "DEL PEAK 20(9P23) WILD-TYPE" 
                 TCGA-BR-8296                  TCGA-BR-8297 
"DEL PEAK 20(9P23) WILD-TYPE" "DEL PEAK 20(9P23) WILD-TYPE" 
                 TCGA-CD-5798                  TCGA-CD-5799 
"DEL PEAK 20(9P23) WILD-TYPE"   "DEL PEAK 20(9P23) MUTATED" 
                 TCGA-CD-5800                  TCGA-CD-5801 
  "DEL PEAK 20(9P23) MUTATED" "DEL PEAK 20(9P23) WILD-TYPE" 
                 TCGA-CD-5802                  TCGA-CD-5803 
"DEL PEAK 20(9P23) WILD-TYPE"   "DEL PEAK 20(9P23) MUTATED" 
                 TCGA-CG-4300                  TCGA-CG-4301 
"DEL PEAK 20(9P23) WILD-TYPE"   "DEL PEAK 20(9P23) MUTATED" 
                 TCGA-CG-4304                  TCGA-CG-4305 
"DEL PEAK 20(9P23) WILD-TYPE" "DEL PEAK 20(9P23) WILD-TYPE" 
                 TCGA-CG-4306                  TCGA-CG-4436 
"DEL PEAK 20(9P23) WILD-TYPE" "DEL PEAK 20(9P23) WILD-TYPE" 
                 TCGA-CG-4437                  TCGA-CG-4438 
  "DEL PEAK 20(9P23) MUTATED"   "DEL PEAK 20(9P23) MUTATED" 
                 TCGA-CG-4440                  TCGA-CG-4441 
  "DEL PEAK 20(9P23) MUTATED" "DEL PEAK 20(9P23) WILD-TYPE" 
                 TCGA-CG-4443                  TCGA-CG-4444 
  "DEL PEAK 20(9P23) MUTATED"   "DEL PEAK 20(9P23) MUTATED" 
                 TCGA-CG-4449                  TCGA-CG-4455 
  "DEL PEAK 20(9P23) MUTATED"   "DEL PEAK 20(9P23) MUTATED" 
                 TCGA-CG-4460                  TCGA-CG-4462 
"DEL PEAK 20(9P23) WILD-TYPE" "DEL PEAK 20(9P23) WILD-TYPE" 
                 TCGA-CG-4465                  TCGA-CG-4466 
"DEL PEAK 20(9P23) WILD-TYPE"   "DEL PEAK 20(9P23) MUTATED" 
                 TCGA-CG-4469                  TCGA-CG-4472 
"DEL PEAK 20(9P23) WILD-TYPE"   "DEL PEAK 20(9P23) MUTATED" 
                 TCGA-CG-4474                  TCGA-CG-4477 
"DEL PEAK 20(9P23) WILD-TYPE" "DEL PEAK 20(9P23) WILD-TYPE" 
                 TCGA-CG-5716                  TCGA-CG-5717 
"DEL PEAK 20(9P23) WILD-TYPE" "DEL PEAK 20(9P23) WILD-TYPE" 
                 TCGA-CG-5718                  TCGA-CG-5719 
  "DEL PEAK 20(9P23) MUTATED"   "DEL PEAK 20(9P23) MUTATED" 
                 TCGA-CG-5720                  TCGA-CG-5721 
"DEL PEAK 20(9P23) WILD-TYPE" "DEL PEAK 20(9P23) WILD-TYPE" 
                 TCGA-CG-5722                  TCGA-CG-5723 
"DEL PEAK 20(9P23) WILD-TYPE"   "DEL PEAK 20(9P23) MUTATED" 
                 TCGA-CG-5724                  TCGA-CG-5725 
  "DEL PEAK 20(9P23) MUTATED" "DEL PEAK 20(9P23) WILD-TYPE" 
                 TCGA-CG-5726                  TCGA-CG-5727 
"DEL PEAK 20(9P23) WILD-TYPE" "DEL PEAK 20(9P23) WILD-TYPE" 
                 TCGA-CG-5728                  TCGA-CG-5730 
"DEL PEAK 20(9P23) WILD-TYPE"   "DEL PEAK 20(9P23) MUTATED" 
                 TCGA-CG-5732                  TCGA-CG-5733 
  "DEL PEAK 20(9P23) MUTATED" "DEL PEAK 20(9P23) WILD-TYPE" 
                 TCGA-CG-5734                  TCGA-D7-5577 
"DEL PEAK 20(9P23) WILD-TYPE"   "DEL PEAK 20(9P23) MUTATED" 
                 TCGA-D7-5578                  TCGA-D7-5579 
  "DEL PEAK 20(9P23) MUTATED"   "DEL PEAK 20(9P23) MUTATED" 
                 TCGA-D7-6518                  TCGA-D7-6519 
  "DEL PEAK 20(9P23) MUTATED"   "DEL PEAK 20(9P23) MUTATED" 
                 TCGA-D7-6520                  TCGA-D7-6521 
  "DEL PEAK 20(9P23) MUTATED"   "DEL PEAK 20(9P23) MUTATED" 
                 TCGA-D7-6522                  TCGA-D7-6524 
"DEL PEAK 20(9P23) WILD-TYPE" "DEL PEAK 20(9P23) WILD-TYPE" 
                 TCGA-D7-6525                  TCGA-D7-6526 
  "DEL PEAK 20(9P23) MUTATED"   "DEL PEAK 20(9P23) MUTATED" 
                 TCGA-D7-6527                  TCGA-D7-6528 
  "DEL PEAK 20(9P23) MUTATED" "DEL PEAK 20(9P23) WILD-TYPE" 
                 TCGA-D7-6815                  TCGA-D7-6817 
  "DEL PEAK 20(9P23) MUTATED"   "DEL PEAK 20(9P23) MUTATED" 
                 TCGA-D7-6818                  TCGA-D7-6820 
"DEL PEAK 20(9P23) WILD-TYPE"   "DEL PEAK 20(9P23) MUTATED" 
                 TCGA-D7-6822                  TCGA-EQ-5647 
"DEL PEAK 20(9P23) WILD-TYPE" "DEL PEAK 20(9P23) WILD-TYPE" 
                 TCGA-EQ-8122                  TCGA-F1-6177 
  "DEL PEAK 20(9P23) MUTATED" "DEL PEAK 20(9P23) WILD-TYPE" 
                 TCGA-F1-6874                  TCGA-F1-6875 
"DEL PEAK 20(9P23) WILD-TYPE" "DEL PEAK 20(9P23) WILD-TYPE" 
                 TCGA-FP-7735                  TCGA-FP-7829 
"DEL PEAK 20(9P23) WILD-TYPE"   "DEL PEAK 20(9P23) MUTATED" 
                 TCGA-FP-7916                  TCGA-FP-7998 
  "DEL PEAK 20(9P23) MUTATED" "DEL PEAK 20(9P23) WILD-TYPE" 
                 TCGA-HJ-7597                  TCGA-IN-7806 
"DEL PEAK 20(9P23) WILD-TYPE"   "DEL PEAK 20(9P23) MUTATED" 
                 TCGA-IN-7808                  TCGA-IP-7968 
"DEL PEAK 20(9P23) WILD-TYPE" "DEL PEAK 20(9P23) WILD-TYPE" 
                 TCGA-B7-5816                  TCGA-B7-5818 
  "DEL PEAK 20(9P23) MUTATED" "DEL PEAK 20(9P23) WILD-TYPE" 
                 TCGA-BR-6452                  TCGA-BR-6455 
"DEL PEAK 20(9P23) WILD-TYPE" "DEL PEAK 20(9P23) WILD-TYPE" 
                 TCGA-BR-6457                  TCGA-BR-6458 
  "DEL PEAK 20(9P23) MUTATED"   "DEL PEAK 20(9P23) MUTATED" 
                 TCGA-BR-6563                  TCGA-BR-6564 
"DEL PEAK 20(9P23) WILD-TYPE" "DEL PEAK 20(9P23) WILD-TYPE" 
                 TCGA-BR-6565                  TCGA-BR-6566 
"DEL PEAK 20(9P23) WILD-TYPE" "DEL PEAK 20(9P23) WILD-TYPE" 
                 TCGA-BR-6705                  TCGA-BR-6706 
"DEL PEAK 20(9P23) WILD-TYPE" "DEL PEAK 20(9P23) WILD-TYPE" 
                 TCGA-BR-6707                  TCGA-BR-6709 
  "DEL PEAK 20(9P23) MUTATED"   "DEL PEAK 20(9P23) MUTATED" 
                 TCGA-BR-6710                  TCGA-BR-6801 
"DEL PEAK 20(9P23) WILD-TYPE" "DEL PEAK 20(9P23) WILD-TYPE" 
                 TCGA-BR-6802                  TCGA-BR-6803 
"DEL PEAK 20(9P23) WILD-TYPE"   "DEL PEAK 20(9P23) MUTATED" 
                 TCGA-BR-6852                  TCGA-BR-7196 
"DEL PEAK 20(9P23) WILD-TYPE" "DEL PEAK 20(9P23) WILD-TYPE" 
                 TCGA-BR-7197                  TCGA-BR-7703 
  "DEL PEAK 20(9P23) MUTATED" "DEL PEAK 20(9P23) WILD-TYPE" 
                 TCGA-BR-7704                  TCGA-BR-7707 
"DEL PEAK 20(9P23) WILD-TYPE" "DEL PEAK 20(9P23) WILD-TYPE" 
                 TCGA-BR-7715                  TCGA-BR-7716 
  "DEL PEAK 20(9P23) MUTATED"   "DEL PEAK 20(9P23) MUTATED" 
                 TCGA-BR-7717                  TCGA-BR-7722 
  "DEL PEAK 20(9P23) MUTATED"   "DEL PEAK 20(9P23) MUTATED" 
                 TCGA-BR-7723                  TCGA-BR-7851 
  "DEL PEAK 20(9P23) MUTATED" "DEL PEAK 20(9P23) WILD-TYPE" 
                 TCGA-BR-7901                  TCGA-BR-7957 
  "DEL PEAK 20(9P23) MUTATED" "DEL PEAK 20(9P23) WILD-TYPE" 
                 TCGA-BR-7958                  TCGA-BR-7959 
"DEL PEAK 20(9P23) WILD-TYPE" "DEL PEAK 20(9P23) WILD-TYPE" 
                 TCGA-BR-8059                  TCGA-BR-8060 
"DEL PEAK 20(9P23) WILD-TYPE" "DEL PEAK 20(9P23) WILD-TYPE" 
                 TCGA-BR-8077                  TCGA-BR-8078 
"DEL PEAK 20(9P23) WILD-TYPE" "DEL PEAK 20(9P23) WILD-TYPE" 
                 TCGA-BR-8080                  TCGA-BR-8081 
"DEL PEAK 20(9P23) WILD-TYPE" "DEL PEAK 20(9P23) WILD-TYPE" 
                 TCGA-BR-8284                  TCGA-BR-8285 
"DEL PEAK 20(9P23) WILD-TYPE" "DEL PEAK 20(9P23) WILD-TYPE" 
                 TCGA-BR-8286                  TCGA-BR-8289 
"DEL PEAK 20(9P23) WILD-TYPE" "DEL PEAK 20(9P23) WILD-TYPE" 
                 TCGA-BR-8291                  TCGA-BR-8295 
"DEL PEAK 20(9P23) WILD-TYPE" "DEL PEAK 20(9P23) WILD-TYPE" 
                 TCGA-BR-8296                  TCGA-BR-8297 
"DEL PEAK 20(9P23) WILD-TYPE" "DEL PEAK 20(9P23) WILD-TYPE" 
                 TCGA-CD-5798                  TCGA-CD-5799 
"DEL PEAK 20(9P23) WILD-TYPE"   "DEL PEAK 20(9P23) MUTATED" 
                 TCGA-CD-5800                  TCGA-CD-5801 
  "DEL PEAK 20(9P23) MUTATED" "DEL PEAK 20(9P23) WILD-TYPE" 
                 TCGA-CD-5802                  TCGA-CD-5803 
"DEL PEAK 20(9P23) WILD-TYPE"   "DEL PEAK 20(9P23) MUTATED" 
                 TCGA-CG-4300                  TCGA-CG-4301 
"DEL PEAK 20(9P23) WILD-TYPE"   "DEL PEAK 20(9P23) MUTATED" 
                 TCGA-CG-4304                  TCGA-CG-4305 
"DEL PEAK 20(9P23) WILD-TYPE" "DEL PEAK 20(9P23) WILD-TYPE" 
                 TCGA-CG-4306                  TCGA-CG-4436 
"DEL PEAK 20(9P23) WILD-TYPE" "DEL PEAK 20(9P23) WILD-TYPE" 
                 TCGA-CG-4437                  TCGA-CG-4438 
  "DEL PEAK 20(9P23) MUTATED"   "DEL PEAK 20(9P23) MUTATED" 
                 TCGA-CG-4440                  TCGA-CG-4441 
  "DEL PEAK 20(9P23) MUTATED" "DEL PEAK 20(9P23) WILD-TYPE" 
                 TCGA-CG-4443                  TCGA-CG-4444 
  "DEL PEAK 20(9P23) MUTATED"   "DEL PEAK 20(9P23) MUTATED" 
                 TCGA-CG-4449                  TCGA-CG-4455 
  "DEL PEAK 20(9P23) MUTATED"   "DEL PEAK 20(9P23) MUTATED" 
                 TCGA-CG-4460                  TCGA-CG-4462 
"DEL PEAK 20(9P23) WILD-TYPE" "DEL PEAK 20(9P23) WILD-TYPE" 
                 TCGA-CG-4465                  TCGA-CG-4466 
"DEL PEAK 20(9P23) WILD-TYPE"   "DEL PEAK 20(9P23) MUTATED" 
                 TCGA-CG-4469                  TCGA-CG-4472 
"DEL PEAK 20(9P23) WILD-TYPE"   "DEL PEAK 20(9P23) MUTATED" 
                 TCGA-CG-4474                  TCGA-CG-4477 
"DEL PEAK 20(9P23) WILD-TYPE" "DEL PEAK 20(9P23) WILD-TYPE" 
                 TCGA-CG-5716                  TCGA-CG-5717 
"DEL PEAK 20(9P23) WILD-TYPE" "DEL PEAK 20(9P23) WILD-TYPE" 
                 TCGA-CG-5718                  TCGA-CG-5719 
  "DEL PEAK 20(9P23) MUTATED"   "DEL PEAK 20(9P23) MUTATED" 
                 TCGA-CG-5720                  TCGA-CG-5721 
"DEL PEAK 20(9P23) WILD-TYPE" "DEL PEAK 20(9P23) WILD-TYPE" 
                 TCGA-CG-5722                  TCGA-CG-5723 
"DEL PEAK 20(9P23) WILD-TYPE"   "DEL PEAK 20(9P23) MUTATED" 
                 TCGA-CG-5724                  TCGA-CG-5725 
  "DEL PEAK 20(9P23) MUTATED" "DEL PEAK 20(9P23) WILD-TYPE" 
                 TCGA-CG-5726                  TCGA-CG-5727 
"DEL PEAK 20(9P23) WILD-TYPE" "DEL PEAK 20(9P23) WILD-TYPE" 
                 TCGA-CG-5728                  TCGA-CG-5730 
"DEL PEAK 20(9P23) WILD-TYPE"   "DEL PEAK 20(9P23) MUTATED" 
                 TCGA-CG-5732                  TCGA-CG-5733 
  "DEL PEAK 20(9P23) MUTATED" "DEL PEAK 20(9P23) WILD-TYPE" 
                 TCGA-CG-5734                  TCGA-D7-5577 
"DEL PEAK 20(9P23) WILD-TYPE"   "DEL PEAK 20(9P23) MUTATED" 
                 TCGA-D7-5578                  TCGA-D7-5579 
  "DEL PEAK 20(9P23) MUTATED"   "DEL PEAK 20(9P23) MUTATED" 
                 TCGA-D7-6518                  TCGA-D7-6519 
  "DEL PEAK 20(9P23) MUTATED"   "DEL PEAK 20(9P23) MUTATED" 
                 TCGA-D7-6520                  TCGA-D7-6521 
  "DEL PEAK 20(9P23) MUTATED"   "DEL PEAK 20(9P23) MUTATED" 
                 TCGA-D7-6522                  TCGA-D7-6524 
"DEL PEAK 20(9P23) WILD-TYPE" "DEL PEAK 20(9P23) WILD-TYPE" 
                 TCGA-D7-6525                  TCGA-D7-6526 
  "DEL PEAK 20(9P23) MUTATED"   "DEL PEAK 20(9P23) MUTATED" 
                 TCGA-D7-6527                  TCGA-D7-6528 
  "DEL PEAK 20(9P23) MUTATED" "DEL PEAK 20(9P23) WILD-TYPE" 
                 TCGA-D7-6815                  TCGA-D7-6817 
  "DEL PEAK 20(9P23) MUTATED"   "DEL PEAK 20(9P23) MUTATED" 
                 TCGA-D7-6818                  TCGA-D7-6820 
"DEL PEAK 20(9P23) WILD-TYPE"   "DEL PEAK 20(9P23) MUTATED" 
                 TCGA-D7-6822                  TCGA-EQ-5647 
"DEL PEAK 20(9P23) WILD-TYPE" "DEL PEAK 20(9P23) WILD-TYPE" 
                 TCGA-EQ-8122                  TCGA-F1-6177 
  "DEL PEAK 20(9P23) MUTATED" "DEL PEAK 20(9P23) WILD-TYPE" 
                 TCGA-F1-6874                  TCGA-F1-6875 
"DEL PEAK 20(9P23) WILD-TYPE" "DEL PEAK 20(9P23) WILD-TYPE" 
                 TCGA-FP-7735                  TCGA-FP-7829 
"DEL PEAK 20(9P23) WILD-TYPE"   "DEL PEAK 20(9P23) MUTATED" 
                 TCGA-FP-7916                  TCGA-FP-7998 
  "DEL PEAK 20(9P23) MUTATED" "DEL PEAK 20(9P23) WILD-TYPE" 
                 TCGA-HJ-7597                  TCGA-IN-7806 
"DEL PEAK 20(9P23) WILD-TYPE"   "DEL PEAK 20(9P23) MUTATED" 
                 TCGA-IN-7808                  TCGA-IP-7968 
"DEL PEAK 20(9P23) WILD-TYPE" "DEL PEAK 20(9P23) WILD-TYPE" 
[1] "hr=" "5.5"
D46V2, continuous
D46V3, binary
[1] "tbl2"
                             cls
clus                          [,1] [,2]
  DEL PEAK 20(9P23) MUTATED     25   38
  DEL PEAK 20(9P23) WILD-TYPE   40   58
        clus
vv       DEL PEAK 20(9P23) MUTATED DEL PEAK 20(9P23) WILD-TYPE
  FEMALE                        25                          40
  MALE                          38                          58
D46V4, multiclass
D46V5, multiclass
    clus
vv   DEL PEAK 20(9P23) MUTATED DEL PEAK 20(9P23) WILD-TYPE
  T1                         1                           5
  T2                        23                          30
  T3                        25                          34
  T4                         9                          24
D46V6, multiclass
    clus
vv   DEL PEAK 20(9P23) MUTATED DEL PEAK 20(9P23) WILD-TYPE
  N0                        13                          37
  N1                        26                          31
  N2                        11                          13
  N3                         9                          10
D46V7, multiclass
    clus
vv   DEL PEAK 20(9P23) MUTATED DEL PEAK 20(9P23) WILD-TYPE
  M0                        55                          77
  M1                         5                          13
  MX                         3                           8
D46V8, multiclass
     clus
vv    DEL PEAK 20(9P23) MUTATED DEL PEAK 20(9P23) WILD-TYPE
  I                           3                          22
  II                         21                          22
  III                        21                          27
  IV                         12                          17
D46V9, binary
[1] "tbl2"
                             cls
clus                          [,1] [,2]
  DEL PEAK 20(9P23) MUTATED     60    3
  DEL PEAK 20(9P23) WILD-TYPE   96    2
     clus
vv    DEL PEAK 20(9P23) MUTATED DEL PEAK 20(9P23) WILD-TYPE
  NO                          3                           2
  YES                        60                          96

Clustering(47) Variable = Del Peak 21(9p21.3) mutation analysis
D47V1, survival
                   TCGA-B7-5816                    TCGA-B7-5818 
"DEL PEAK 21(9P21.3) WILD-TYPE" "DEL PEAK 21(9P21.3) WILD-TYPE" 
                   TCGA-BR-6452                    TCGA-BR-6455 
"DEL PEAK 21(9P21.3) WILD-TYPE" "DEL PEAK 21(9P21.3) WILD-TYPE" 
                   TCGA-BR-6457                    TCGA-BR-6458 
  "DEL PEAK 21(9P21.3) MUTATED"   "DEL PEAK 21(9P21.3) MUTATED" 
                   TCGA-BR-6563                    TCGA-BR-6564 
"DEL PEAK 21(9P21.3) WILD-TYPE" "DEL PEAK 21(9P21.3) WILD-TYPE" 
                   TCGA-BR-6565                    TCGA-BR-6566 
"DEL PEAK 21(9P21.3) WILD-TYPE" "DEL PEAK 21(9P21.3) WILD-TYPE" 
                   TCGA-BR-6705                    TCGA-BR-6706 
"DEL PEAK 21(9P21.3) WILD-TYPE" "DEL PEAK 21(9P21.3) WILD-TYPE" 
                   TCGA-BR-6707                    TCGA-BR-6709 
"DEL PEAK 21(9P21.3) WILD-TYPE"   "DEL PEAK 21(9P21.3) MUTATED" 
                   TCGA-BR-6710                    TCGA-BR-6801 
"DEL PEAK 21(9P21.3) WILD-TYPE" "DEL PEAK 21(9P21.3) WILD-TYPE" 
                   TCGA-BR-6802                    TCGA-BR-6803 
"DEL PEAK 21(9P21.3) WILD-TYPE"   "DEL PEAK 21(9P21.3) MUTATED" 
                   TCGA-BR-6852                    TCGA-BR-7196 
"DEL PEAK 21(9P21.3) WILD-TYPE" "DEL PEAK 21(9P21.3) WILD-TYPE" 
                   TCGA-BR-7197                    TCGA-BR-7703 
  "DEL PEAK 21(9P21.3) MUTATED" "DEL PEAK 21(9P21.3) WILD-TYPE" 
                   TCGA-BR-7704                    TCGA-BR-7707 
"DEL PEAK 21(9P21.3) WILD-TYPE" "DEL PEAK 21(9P21.3) WILD-TYPE" 
                   TCGA-BR-7715                    TCGA-BR-7716 
  "DEL PEAK 21(9P21.3) MUTATED"   "DEL PEAK 21(9P21.3) MUTATED" 
                   TCGA-BR-7717                    TCGA-BR-7722 
  "DEL PEAK 21(9P21.3) MUTATED"   "DEL PEAK 21(9P21.3) MUTATED" 
                   TCGA-BR-7723                    TCGA-BR-7851 
  "DEL PEAK 21(9P21.3) MUTATED" "DEL PEAK 21(9P21.3) WILD-TYPE" 
                   TCGA-BR-7901                    TCGA-BR-7957 
  "DEL PEAK 21(9P21.3) MUTATED" "DEL PEAK 21(9P21.3) WILD-TYPE" 
                   TCGA-BR-7958                    TCGA-BR-7959 
"DEL PEAK 21(9P21.3) WILD-TYPE" "DEL PEAK 21(9P21.3) WILD-TYPE" 
                   TCGA-BR-8059                    TCGA-BR-8060 
"DEL PEAK 21(9P21.3) WILD-TYPE" "DEL PEAK 21(9P21.3) WILD-TYPE" 
                   TCGA-BR-8077                    TCGA-BR-8078 
"DEL PEAK 21(9P21.3) WILD-TYPE" "DEL PEAK 21(9P21.3) WILD-TYPE" 
                   TCGA-BR-8080                    TCGA-BR-8081 
"DEL PEAK 21(9P21.3) WILD-TYPE" "DEL PEAK 21(9P21.3) WILD-TYPE" 
                   TCGA-BR-8284                    TCGA-BR-8285 
"DEL PEAK 21(9P21.3) WILD-TYPE" "DEL PEAK 21(9P21.3) WILD-TYPE" 
                   TCGA-BR-8286                    TCGA-BR-8289 
"DEL PEAK 21(9P21.3) WILD-TYPE" "DEL PEAK 21(9P21.3) WILD-TYPE" 
                   TCGA-BR-8291                    TCGA-BR-8295 
"DEL PEAK 21(9P21.3) WILD-TYPE" "DEL PEAK 21(9P21.3) WILD-TYPE" 
                   TCGA-BR-8296                    TCGA-BR-8297 
"DEL PEAK 21(9P21.3) WILD-TYPE" "DEL PEAK 21(9P21.3) WILD-TYPE" 
                   TCGA-CD-5798                    TCGA-CD-5799 
  "DEL PEAK 21(9P21.3) MUTATED"   "DEL PEAK 21(9P21.3) MUTATED" 
                   TCGA-CD-5800                    TCGA-CD-5801 
  "DEL PEAK 21(9P21.3) MUTATED" "DEL PEAK 21(9P21.3) WILD-TYPE" 
                   TCGA-CD-5802                    TCGA-CD-5803 
"DEL PEAK 21(9P21.3) WILD-TYPE"   "DEL PEAK 21(9P21.3) MUTATED" 
                   TCGA-CG-4300                    TCGA-CG-4301 
"DEL PEAK 21(9P21.3) WILD-TYPE"   "DEL PEAK 21(9P21.3) MUTATED" 
                   TCGA-CG-4304                    TCGA-CG-4305 
  "DEL PEAK 21(9P21.3) MUTATED" "DEL PEAK 21(9P21.3) WILD-TYPE" 
                   TCGA-CG-4306                    TCGA-CG-4436 
"DEL PEAK 21(9P21.3) WILD-TYPE" "DEL PEAK 21(9P21.3) WILD-TYPE" 
                   TCGA-CG-4437                    TCGA-CG-4438 
"DEL PEAK 21(9P21.3) WILD-TYPE"   "DEL PEAK 21(9P21.3) MUTATED" 
                   TCGA-CG-4440                    TCGA-CG-4441 
  "DEL PEAK 21(9P21.3) MUTATED"   "DEL PEAK 21(9P21.3) MUTATED" 
                   TCGA-CG-4443                    TCGA-CG-4444 
  "DEL PEAK 21(9P21.3) MUTATED"   "DEL PEAK 21(9P21.3) MUTATED" 
                   TCGA-CG-4449                    TCGA-CG-4455 
  "DEL PEAK 21(9P21.3) MUTATED"   "DEL PEAK 21(9P21.3) MUTATED" 
                   TCGA-CG-4460                    TCGA-CG-4462 
"DEL PEAK 21(9P21.3) WILD-TYPE" "DEL PEAK 21(9P21.3) WILD-TYPE" 
                   TCGA-CG-4465                    TCGA-CG-4466 
"DEL PEAK 21(9P21.3) WILD-TYPE"   "DEL PEAK 21(9P21.3) MUTATED" 
                   TCGA-CG-4469                    TCGA-CG-4472 
"DEL PEAK 21(9P21.3) WILD-TYPE"   "DEL PEAK 21(9P21.3) MUTATED" 
                   TCGA-CG-4474                    TCGA-CG-4477 
"DEL PEAK 21(9P21.3) WILD-TYPE"   "DEL PEAK 21(9P21.3) MUTATED" 
                   TCGA-CG-5716                    TCGA-CG-5717 
"DEL PEAK 21(9P21.3) WILD-TYPE" "DEL PEAK 21(9P21.3) WILD-TYPE" 
                   TCGA-CG-5718                    TCGA-CG-5719 
  "DEL PEAK 21(9P21.3) MUTATED"   "DEL PEAK 21(9P21.3) MUTATED" 
                   TCGA-CG-5720                    TCGA-CG-5721 
  "DEL PEAK 21(9P21.3) MUTATED" "DEL PEAK 21(9P21.3) WILD-TYPE" 
                   TCGA-CG-5722                    TCGA-CG-5723 
"DEL PEAK 21(9P21.3) WILD-TYPE" "DEL PEAK 21(9P21.3) WILD-TYPE" 
                   TCGA-CG-5724                    TCGA-CG-5725 
  "DEL PEAK 21(9P21.3) MUTATED"   "DEL PEAK 21(9P21.3) MUTATED" 
                   TCGA-CG-5726                    TCGA-CG-5727 
"DEL PEAK 21(9P21.3) WILD-TYPE" "DEL PEAK 21(9P21.3) WILD-TYPE" 
                   TCGA-CG-5728                    TCGA-CG-5730 
"DEL PEAK 21(9P21.3) WILD-TYPE"   "DEL PEAK 21(9P21.3) MUTATED" 
                   TCGA-CG-5732                    TCGA-CG-5733 
  "DEL PEAK 21(9P21.3) MUTATED" "DEL PEAK 21(9P21.3) WILD-TYPE" 
                   TCGA-CG-5734                    TCGA-D7-5577 
"DEL PEAK 21(9P21.3) WILD-TYPE" "DEL PEAK 21(9P21.3) WILD-TYPE" 
                   TCGA-D7-5578                    TCGA-D7-5579 
  "DEL PEAK 21(9P21.3) MUTATED"   "DEL PEAK 21(9P21.3) MUTATED" 
                   TCGA-D7-6518                    TCGA-D7-6519 
"DEL PEAK 21(9P21.3) WILD-TYPE"   "DEL PEAK 21(9P21.3) MUTATED" 
                   TCGA-D7-6520                    TCGA-D7-6521 
  "DEL PEAK 21(9P21.3) MUTATED"   "DEL PEAK 21(9P21.3) MUTATED" 
                   TCGA-D7-6522                    TCGA-D7-6524 
"DEL PEAK 21(9P21.3) WILD-TYPE" "DEL PEAK 21(9P21.3) WILD-TYPE" 
                   TCGA-D7-6525                    TCGA-D7-6526 
  "DEL PEAK 21(9P21.3) MUTATED"   "DEL PEAK 21(9P21.3) MUTATED" 
                   TCGA-D7-6527                    TCGA-D7-6528 
  "DEL PEAK 21(9P21.3) MUTATED" "DEL PEAK 21(9P21.3) WILD-TYPE" 
                   TCGA-D7-6815                    TCGA-D7-6817 
  "DEL PEAK 21(9P21.3) MUTATED"   "DEL PEAK 21(9P21.3) MUTATED" 
                   TCGA-D7-6818                    TCGA-D7-6820 
"DEL PEAK 21(9P21.3) WILD-TYPE"   "DEL PEAK 21(9P21.3) MUTATED" 
                   TCGA-D7-6822                    TCGA-EQ-5647 
"DEL PEAK 21(9P21.3) WILD-TYPE" "DEL PEAK 21(9P21.3) WILD-TYPE" 
                   TCGA-EQ-8122                    TCGA-F1-6177 
  "DEL PEAK 21(9P21.3) MUTATED" "DEL PEAK 21(9P21.3) WILD-TYPE" 
                   TCGA-F1-6874                    TCGA-F1-6875 
"DEL PEAK 21(9P21.3) WILD-TYPE"   "DEL PEAK 21(9P21.3) MUTATED" 
                   TCGA-FP-7735                    TCGA-FP-7829 
"DEL PEAK 21(9P21.3) WILD-TYPE" "DEL PEAK 21(9P21.3) WILD-TYPE" 
                   TCGA-FP-7916                    TCGA-FP-7998 
"DEL PEAK 21(9P21.3) WILD-TYPE" "DEL PEAK 21(9P21.3) WILD-TYPE" 
                   TCGA-HJ-7597                    TCGA-IN-7806 
"DEL PEAK 21(9P21.3) WILD-TYPE"   "DEL PEAK 21(9P21.3) MUTATED" 
                   TCGA-IN-7808                    TCGA-IP-7968 
"DEL PEAK 21(9P21.3) WILD-TYPE"   "DEL PEAK 21(9P21.3) MUTATED" 
                   TCGA-B7-5816                    TCGA-B7-5818 
"DEL PEAK 21(9P21.3) WILD-TYPE" "DEL PEAK 21(9P21.3) WILD-TYPE" 
                   TCGA-BR-6452                    TCGA-BR-6455 
"DEL PEAK 21(9P21.3) WILD-TYPE" "DEL PEAK 21(9P21.3) WILD-TYPE" 
                   TCGA-BR-6457                    TCGA-BR-6458 
  "DEL PEAK 21(9P21.3) MUTATED"   "DEL PEAK 21(9P21.3) MUTATED" 
                   TCGA-BR-6563                    TCGA-BR-6564 
"DEL PEAK 21(9P21.3) WILD-TYPE" "DEL PEAK 21(9P21.3) WILD-TYPE" 
                   TCGA-BR-6565                    TCGA-BR-6566 
"DEL PEAK 21(9P21.3) WILD-TYPE" "DEL PEAK 21(9P21.3) WILD-TYPE" 
                   TCGA-BR-6705                    TCGA-BR-6706 
"DEL PEAK 21(9P21.3) WILD-TYPE" "DEL PEAK 21(9P21.3) WILD-TYPE" 
                   TCGA-BR-6707                    TCGA-BR-6709 
"DEL PEAK 21(9P21.3) WILD-TYPE"   "DEL PEAK 21(9P21.3) MUTATED" 
                   TCGA-BR-6710                    TCGA-BR-6801 
"DEL PEAK 21(9P21.3) WILD-TYPE" "DEL PEAK 21(9P21.3) WILD-TYPE" 
                   TCGA-BR-6802                    TCGA-BR-6803 
"DEL PEAK 21(9P21.3) WILD-TYPE"   "DEL PEAK 21(9P21.3) MUTATED" 
                   TCGA-BR-6852                    TCGA-BR-7196 
"DEL PEAK 21(9P21.3) WILD-TYPE" "DEL PEAK 21(9P21.3) WILD-TYPE" 
                   TCGA-BR-7197                    TCGA-BR-7703 
  "DEL PEAK 21(9P21.3) MUTATED" "DEL PEAK 21(9P21.3) WILD-TYPE" 
                   TCGA-BR-7704                    TCGA-BR-7707 
"DEL PEAK 21(9P21.3) WILD-TYPE" "DEL PEAK 21(9P21.3) WILD-TYPE" 
                   TCGA-BR-7715                    TCGA-BR-7716 
  "DEL PEAK 21(9P21.3) MUTATED"   "DEL PEAK 21(9P21.3) MUTATED" 
                   TCGA-BR-7717                    TCGA-BR-7722 
  "DEL PEAK 21(9P21.3) MUTATED"   "DEL PEAK 21(9P21.3) MUTATED" 
                   TCGA-BR-7723                    TCGA-BR-7851 
  "DEL PEAK 21(9P21.3) MUTATED" "DEL PEAK 21(9P21.3) WILD-TYPE" 
                   TCGA-BR-7901                    TCGA-BR-7957 
  "DEL PEAK 21(9P21.3) MUTATED" "DEL PEAK 21(9P21.3) WILD-TYPE" 
                   TCGA-BR-7958                    TCGA-BR-7959 
"DEL PEAK 21(9P21.3) WILD-TYPE" "DEL PEAK 21(9P21.3) WILD-TYPE" 
                   TCGA-BR-8059                    TCGA-BR-8060 
"DEL PEAK 21(9P21.3) WILD-TYPE" "DEL PEAK 21(9P21.3) WILD-TYPE" 
                   TCGA-BR-8077                    TCGA-BR-8078 
"DEL PEAK 21(9P21.3) WILD-TYPE" "DEL PEAK 21(9P21.3) WILD-TYPE" 
                   TCGA-BR-8080                    TCGA-BR-8081 
"DEL PEAK 21(9P21.3) WILD-TYPE" "DEL PEAK 21(9P21.3) WILD-TYPE" 
                   TCGA-BR-8284                    TCGA-BR-8285 
"DEL PEAK 21(9P21.3) WILD-TYPE" "DEL PEAK 21(9P21.3) WILD-TYPE" 
                   TCGA-BR-8286                    TCGA-BR-8289 
"DEL PEAK 21(9P21.3) WILD-TYPE" "DEL PEAK 21(9P21.3) WILD-TYPE" 
                   TCGA-BR-8291                    TCGA-BR-8295 
"DEL PEAK 21(9P21.3) WILD-TYPE" "DEL PEAK 21(9P21.3) WILD-TYPE" 
                   TCGA-BR-8296                    TCGA-BR-8297 
"DEL PEAK 21(9P21.3) WILD-TYPE" "DEL PEAK 21(9P21.3) WILD-TYPE" 
                   TCGA-CD-5798                    TCGA-CD-5799 
  "DEL PEAK 21(9P21.3) MUTATED"   "DEL PEAK 21(9P21.3) MUTATED" 
                   TCGA-CD-5800                    TCGA-CD-5801 
  "DEL PEAK 21(9P21.3) MUTATED" "DEL PEAK 21(9P21.3) WILD-TYPE" 
                   TCGA-CD-5802                    TCGA-CD-5803 
"DEL PEAK 21(9P21.3) WILD-TYPE"   "DEL PEAK 21(9P21.3) MUTATED" 
                   TCGA-CG-4300                    TCGA-CG-4301 
"DEL PEAK 21(9P21.3) WILD-TYPE"   "DEL PEAK 21(9P21.3) MUTATED" 
                   TCGA-CG-4304                    TCGA-CG-4305 
  "DEL PEAK 21(9P21.3) MUTATED" "DEL PEAK 21(9P21.3) WILD-TYPE" 
                   TCGA-CG-4306                    TCGA-CG-4436 
"DEL PEAK 21(9P21.3) WILD-TYPE" "DEL PEAK 21(9P21.3) WILD-TYPE" 
                   TCGA-CG-4437                    TCGA-CG-4438 
"DEL PEAK 21(9P21.3) WILD-TYPE"   "DEL PEAK 21(9P21.3) MUTATED" 
                   TCGA-CG-4440                    TCGA-CG-4441 
  "DEL PEAK 21(9P21.3) MUTATED"   "DEL PEAK 21(9P21.3) MUTATED" 
                   TCGA-CG-4443                    TCGA-CG-4444 
  "DEL PEAK 21(9P21.3) MUTATED"   "DEL PEAK 21(9P21.3) MUTATED" 
                   TCGA-CG-4449                    TCGA-CG-4455 
  "DEL PEAK 21(9P21.3) MUTATED"   "DEL PEAK 21(9P21.3) MUTATED" 
                   TCGA-CG-4460                    TCGA-CG-4462 
"DEL PEAK 21(9P21.3) WILD-TYPE" "DEL PEAK 21(9P21.3) WILD-TYPE" 
                   TCGA-CG-4465                    TCGA-CG-4466 
"DEL PEAK 21(9P21.3) WILD-TYPE"   "DEL PEAK 21(9P21.3) MUTATED" 
                   TCGA-CG-4469                    TCGA-CG-4472 
"DEL PEAK 21(9P21.3) WILD-TYPE"   "DEL PEAK 21(9P21.3) MUTATED" 
                   TCGA-CG-4474                    TCGA-CG-4477 
"DEL PEAK 21(9P21.3) WILD-TYPE"   "DEL PEAK 21(9P21.3) MUTATED" 
                   TCGA-CG-5716                    TCGA-CG-5717 
"DEL PEAK 21(9P21.3) WILD-TYPE" "DEL PEAK 21(9P21.3) WILD-TYPE" 
                   TCGA-CG-5718                    TCGA-CG-5719 
  "DEL PEAK 21(9P21.3) MUTATED"   "DEL PEAK 21(9P21.3) MUTATED" 
                   TCGA-CG-5720                    TCGA-CG-5721 
  "DEL PEAK 21(9P21.3) MUTATED" "DEL PEAK 21(9P21.3) WILD-TYPE" 
                   TCGA-CG-5722                    TCGA-CG-5723 
"DEL PEAK 21(9P21.3) WILD-TYPE" "DEL PEAK 21(9P21.3) WILD-TYPE" 
                   TCGA-CG-5724                    TCGA-CG-5725 
  "DEL PEAK 21(9P21.3) MUTATED"   "DEL PEAK 21(9P21.3) MUTATED" 
                   TCGA-CG-5726                    TCGA-CG-5727 
"DEL PEAK 21(9P21.3) WILD-TYPE" "DEL PEAK 21(9P21.3) WILD-TYPE" 
                   TCGA-CG-5728                    TCGA-CG-5730 
"DEL PEAK 21(9P21.3) WILD-TYPE"   "DEL PEAK 21(9P21.3) MUTATED" 
                   TCGA-CG-5732                    TCGA-CG-5733 
  "DEL PEAK 21(9P21.3) MUTATED" "DEL PEAK 21(9P21.3) WILD-TYPE" 
                   TCGA-CG-5734                    TCGA-D7-5577 
"DEL PEAK 21(9P21.3) WILD-TYPE" "DEL PEAK 21(9P21.3) WILD-TYPE" 
                   TCGA-D7-5578                    TCGA-D7-5579 
  "DEL PEAK 21(9P21.3) MUTATED"   "DEL PEAK 21(9P21.3) MUTATED" 
                   TCGA-D7-6518                    TCGA-D7-6519 
"DEL PEAK 21(9P21.3) WILD-TYPE"   "DEL PEAK 21(9P21.3) MUTATED" 
                   TCGA-D7-6520                    TCGA-D7-6521 
  "DEL PEAK 21(9P21.3) MUTATED"   "DEL PEAK 21(9P21.3) MUTATED" 
                   TCGA-D7-6522                    TCGA-D7-6524 
"DEL PEAK 21(9P21.3) WILD-TYPE" "DEL PEAK 21(9P21.3) WILD-TYPE" 
                   TCGA-D7-6525                    TCGA-D7-6526 
  "DEL PEAK 21(9P21.3) MUTATED"   "DEL PEAK 21(9P21.3) MUTATED" 
                   TCGA-D7-6527                    TCGA-D7-6528 
  "DEL PEAK 21(9P21.3) MUTATED" "DEL PEAK 21(9P21.3) WILD-TYPE" 
                   TCGA-D7-6815                    TCGA-D7-6817 
  "DEL PEAK 21(9P21.3) MUTATED"   "DEL PEAK 21(9P21.3) MUTATED" 
                   TCGA-D7-6818                    TCGA-D7-6820 
"DEL PEAK 21(9P21.3) WILD-TYPE"   "DEL PEAK 21(9P21.3) MUTATED" 
                   TCGA-D7-6822                    TCGA-EQ-5647 
"DEL PEAK 21(9P21.3) WILD-TYPE" "DEL PEAK 21(9P21.3) WILD-TYPE" 
                   TCGA-EQ-8122                    TCGA-F1-6177 
  "DEL PEAK 21(9P21.3) MUTATED" "DEL PEAK 21(9P21.3) WILD-TYPE" 
                   TCGA-F1-6874                    TCGA-F1-6875 
"DEL PEAK 21(9P21.3) WILD-TYPE"   "DEL PEAK 21(9P21.3) MUTATED" 
                   TCGA-FP-7735                    TCGA-FP-7829 
"DEL PEAK 21(9P21.3) WILD-TYPE" "DEL PEAK 21(9P21.3) WILD-TYPE" 
                   TCGA-FP-7916                    TCGA-FP-7998 
"DEL PEAK 21(9P21.3) WILD-TYPE" "DEL PEAK 21(9P21.3) WILD-TYPE" 
                   TCGA-HJ-7597                    TCGA-IN-7806 
"DEL PEAK 21(9P21.3) WILD-TYPE"   "DEL PEAK 21(9P21.3) MUTATED" 
                   TCGA-IN-7808                    TCGA-IP-7968 
"DEL PEAK 21(9P21.3) WILD-TYPE"   "DEL PEAK 21(9P21.3) MUTATED" 
                   TCGA-B7-5816                    TCGA-B7-5818 
"DEL PEAK 21(9P21.3) WILD-TYPE" "DEL PEAK 21(9P21.3) WILD-TYPE" 
                   TCGA-BR-6452                    TCGA-BR-6455 
"DEL PEAK 21(9P21.3) WILD-TYPE" "DEL PEAK 21(9P21.3) WILD-TYPE" 
                   TCGA-BR-6457                    TCGA-BR-6458 
  "DEL PEAK 21(9P21.3) MUTATED"   "DEL PEAK 21(9P21.3) MUTATED" 
                   TCGA-BR-6563                    TCGA-BR-6564 
"DEL PEAK 21(9P21.3) WILD-TYPE" "DEL PEAK 21(9P21.3) WILD-TYPE" 
                   TCGA-BR-6565                    TCGA-BR-6566 
"DEL PEAK 21(9P21.3) WILD-TYPE" "DEL PEAK 21(9P21.3) WILD-TYPE" 
                   TCGA-BR-6705                    TCGA-BR-6706 
"DEL PEAK 21(9P21.3) WILD-TYPE" "DEL PEAK 21(9P21.3) WILD-TYPE" 
                   TCGA-BR-6707                    TCGA-BR-6709 
"DEL PEAK 21(9P21.3) WILD-TYPE"   "DEL PEAK 21(9P21.3) MUTATED" 
                   TCGA-BR-6710                    TCGA-BR-6801 
"DEL PEAK 21(9P21.3) WILD-TYPE" "DEL PEAK 21(9P21.3) WILD-TYPE" 
                   TCGA-BR-6802                    TCGA-BR-6803 
"DEL PEAK 21(9P21.3) WILD-TYPE"   "DEL PEAK 21(9P21.3) MUTATED" 
                   TCGA-BR-6852                    TCGA-BR-7196 
"DEL PEAK 21(9P21.3) WILD-TYPE" "DEL PEAK 21(9P21.3) WILD-TYPE" 
                   TCGA-BR-7197                    TCGA-BR-7703 
  "DEL PEAK 21(9P21.3) MUTATED" "DEL PEAK 21(9P21.3) WILD-TYPE" 
                   TCGA-BR-7704                    TCGA-BR-7707 
"DEL PEAK 21(9P21.3) WILD-TYPE" "DEL PEAK 21(9P21.3) WILD-TYPE" 
                   TCGA-BR-7715                    TCGA-BR-7716 
  "DEL PEAK 21(9P21.3) MUTATED"   "DEL PEAK 21(9P21.3) MUTATED" 
                   TCGA-BR-7717                    TCGA-BR-7722 
  "DEL PEAK 21(9P21.3) MUTATED"   "DEL PEAK 21(9P21.3) MUTATED" 
                   TCGA-BR-7723                    TCGA-BR-7851 
  "DEL PEAK 21(9P21.3) MUTATED" "DEL PEAK 21(9P21.3) WILD-TYPE" 
                   TCGA-BR-7901                    TCGA-BR-7957 
  "DEL PEAK 21(9P21.3) MUTATED" "DEL PEAK 21(9P21.3) WILD-TYPE" 
                   TCGA-BR-7958                    TCGA-BR-7959 
"DEL PEAK 21(9P21.3) WILD-TYPE" "DEL PEAK 21(9P21.3) WILD-TYPE" 
                   TCGA-BR-8059                    TCGA-BR-8060 
"DEL PEAK 21(9P21.3) WILD-TYPE" "DEL PEAK 21(9P21.3) WILD-TYPE" 
                   TCGA-BR-8077                    TCGA-BR-8078 
"DEL PEAK 21(9P21.3) WILD-TYPE" "DEL PEAK 21(9P21.3) WILD-TYPE" 
                   TCGA-BR-8080                    TCGA-BR-8081 
"DEL PEAK 21(9P21.3) WILD-TYPE" "DEL PEAK 21(9P21.3) WILD-TYPE" 
                   TCGA-BR-8284                    TCGA-BR-8285 
"DEL PEAK 21(9P21.3) WILD-TYPE" "DEL PEAK 21(9P21.3) WILD-TYPE" 
                   TCGA-BR-8286                    TCGA-BR-8289 
"DEL PEAK 21(9P21.3) WILD-TYPE" "DEL PEAK 21(9P21.3) WILD-TYPE" 
                   TCGA-BR-8291                    TCGA-BR-8295 
"DEL PEAK 21(9P21.3) WILD-TYPE" "DEL PEAK 21(9P21.3) WILD-TYPE" 
                   TCGA-BR-8296                    TCGA-BR-8297 
"DEL PEAK 21(9P21.3) WILD-TYPE" "DEL PEAK 21(9P21.3) WILD-TYPE" 
                   TCGA-CD-5798                    TCGA-CD-5799 
  "DEL PEAK 21(9P21.3) MUTATED"   "DEL PEAK 21(9P21.3) MUTATED" 
                   TCGA-CD-5800                    TCGA-CD-5801 
  "DEL PEAK 21(9P21.3) MUTATED" "DEL PEAK 21(9P21.3) WILD-TYPE" 
                   TCGA-CD-5802                    TCGA-CD-5803 
"DEL PEAK 21(9P21.3) WILD-TYPE"   "DEL PEAK 21(9P21.3) MUTATED" 
                   TCGA-CG-4300                    TCGA-CG-4301 
"DEL PEAK 21(9P21.3) WILD-TYPE"   "DEL PEAK 21(9P21.3) MUTATED" 
                   TCGA-CG-4304                    TCGA-CG-4305 
  "DEL PEAK 21(9P21.3) MUTATED" "DEL PEAK 21(9P21.3) WILD-TYPE" 
                   TCGA-CG-4306                    TCGA-CG-4436 
"DEL PEAK 21(9P21.3) WILD-TYPE" "DEL PEAK 21(9P21.3) WILD-TYPE" 
                   TCGA-CG-4437                    TCGA-CG-4438 
"DEL PEAK 21(9P21.3) WILD-TYPE"   "DEL PEAK 21(9P21.3) MUTATED" 
                   TCGA-CG-4440                    TCGA-CG-4441 
  "DEL PEAK 21(9P21.3) MUTATED"   "DEL PEAK 21(9P21.3) MUTATED" 
                   TCGA-CG-4443                    TCGA-CG-4444 
  "DEL PEAK 21(9P21.3) MUTATED"   "DEL PEAK 21(9P21.3) MUTATED" 
                   TCGA-CG-4449                    TCGA-CG-4455 
  "DEL PEAK 21(9P21.3) MUTATED"   "DEL PEAK 21(9P21.3) MUTATED" 
                   TCGA-CG-4460                    TCGA-CG-4462 
"DEL PEAK 21(9P21.3) WILD-TYPE" "DEL PEAK 21(9P21.3) WILD-TYPE" 
                   TCGA-CG-4465                    TCGA-CG-4466 
"DEL PEAK 21(9P21.3) WILD-TYPE"   "DEL PEAK 21(9P21.3) MUTATED" 
                   TCGA-CG-4469                    TCGA-CG-4472 
"DEL PEAK 21(9P21.3) WILD-TYPE"   "DEL PEAK 21(9P21.3) MUTATED" 
                   TCGA-CG-4474                    TCGA-CG-4477 
"DEL PEAK 21(9P21.3) WILD-TYPE"   "DEL PEAK 21(9P21.3) MUTATED" 
                   TCGA-CG-5716                    TCGA-CG-5717 
"DEL PEAK 21(9P21.3) WILD-TYPE" "DEL PEAK 21(9P21.3) WILD-TYPE" 
                   TCGA-CG-5718                    TCGA-CG-5719 
  "DEL PEAK 21(9P21.3) MUTATED"   "DEL PEAK 21(9P21.3) MUTATED" 
                   TCGA-CG-5720                    TCGA-CG-5721 
  "DEL PEAK 21(9P21.3) MUTATED" "DEL PEAK 21(9P21.3) WILD-TYPE" 
                   TCGA-CG-5722                    TCGA-CG-5723 
"DEL PEAK 21(9P21.3) WILD-TYPE" "DEL PEAK 21(9P21.3) WILD-TYPE" 
                   TCGA-CG-5724                    TCGA-CG-5725 
  "DEL PEAK 21(9P21.3) MUTATED"   "DEL PEAK 21(9P21.3) MUTATED" 
                   TCGA-CG-5726                    TCGA-CG-5727 
"DEL PEAK 21(9P21.3) WILD-TYPE" "DEL PEAK 21(9P21.3) WILD-TYPE" 
                   TCGA-CG-5728                    TCGA-CG-5730 
"DEL PEAK 21(9P21.3) WILD-TYPE"   "DEL PEAK 21(9P21.3) MUTATED" 
                   TCGA-CG-5732                    TCGA-CG-5733 
  "DEL PEAK 21(9P21.3) MUTATED" "DEL PEAK 21(9P21.3) WILD-TYPE" 
                   TCGA-CG-5734                    TCGA-D7-5577 
"DEL PEAK 21(9P21.3) WILD-TYPE" "DEL PEAK 21(9P21.3) WILD-TYPE" 
                   TCGA-D7-5578                    TCGA-D7-5579 
  "DEL PEAK 21(9P21.3) MUTATED"   "DEL PEAK 21(9P21.3) MUTATED" 
                   TCGA-D7-6518                    TCGA-D7-6519 
"DEL PEAK 21(9P21.3) WILD-TYPE"   "DEL PEAK 21(9P21.3) MUTATED" 
                   TCGA-D7-6520                    TCGA-D7-6521 
  "DEL PEAK 21(9P21.3) MUTATED"   "DEL PEAK 21(9P21.3) MUTATED" 
                   TCGA-D7-6522                    TCGA-D7-6524 
"DEL PEAK 21(9P21.3) WILD-TYPE" "DEL PEAK 21(9P21.3) WILD-TYPE" 
                   TCGA-D7-6525                    TCGA-D7-6526 
  "DEL PEAK 21(9P21.3) MUTATED"   "DEL PEAK 21(9P21.3) MUTATED" 
                   TCGA-D7-6527                    TCGA-D7-6528 
  "DEL PEAK 21(9P21.3) MUTATED" "DEL PEAK 21(9P21.3) WILD-TYPE" 
                   TCGA-D7-6815                    TCGA-D7-6817 
  "DEL PEAK 21(9P21.3) MUTATED"   "DEL PEAK 21(9P21.3) MUTATED" 
                   TCGA-D7-6818                    TCGA-D7-6820 
"DEL PEAK 21(9P21.3) WILD-TYPE"   "DEL PEAK 21(9P21.3) MUTATED" 
                   TCGA-D7-6822                    TCGA-EQ-5647 
"DEL PEAK 21(9P21.3) WILD-TYPE" "DEL PEAK 21(9P21.3) WILD-TYPE" 
                   TCGA-EQ-8122                    TCGA-F1-6177 
  "DEL PEAK 21(9P21.3) MUTATED" "DEL PEAK 21(9P21.3) WILD-TYPE" 
                   TCGA-F1-6874                    TCGA-F1-6875 
"DEL PEAK 21(9P21.3) WILD-TYPE"   "DEL PEAK 21(9P21.3) MUTATED" 
                   TCGA-FP-7735                    TCGA-FP-7829 
"DEL PEAK 21(9P21.3) WILD-TYPE" "DEL PEAK 21(9P21.3) WILD-TYPE" 
                   TCGA-FP-7916                    TCGA-FP-7998 
"DEL PEAK 21(9P21.3) WILD-TYPE" "DEL PEAK 21(9P21.3) WILD-TYPE" 
                   TCGA-HJ-7597                    TCGA-IN-7806 
"DEL PEAK 21(9P21.3) WILD-TYPE"   "DEL PEAK 21(9P21.3) MUTATED" 
                   TCGA-IN-7808                    TCGA-IP-7968 
"DEL PEAK 21(9P21.3) WILD-TYPE"   "DEL PEAK 21(9P21.3) MUTATED" 
[1] "hr=" "2"  
D47V2, continuous
D47V3, binary
[1] "tbl2"
                               cls
clus                            [,1] [,2]
  DEL PEAK 21(9P21.3) MUTATED     22   37
  DEL PEAK 21(9P21.3) WILD-TYPE   43   59
        clus
vv       DEL PEAK 21(9P21.3) MUTATED DEL PEAK 21(9P21.3) WILD-TYPE
  FEMALE                          22                            43
  MALE                            37                            59
D47V4, multiclass
D47V5, multiclass
    clus
vv   DEL PEAK 21(9P21.3) MUTATED DEL PEAK 21(9P21.3) WILD-TYPE
  T1                           1                             5
  T2                          24                            29
  T3                          23                            36
  T4                           7                            26
D47V6, multiclass
    clus
vv   DEL PEAK 21(9P21.3) MUTATED DEL PEAK 21(9P21.3) WILD-TYPE
  N0                          17                            33
  N1                          21                            36
  N2                          13                            11
  N3                           6                            13
D47V7, multiclass
    clus
vv   DEL PEAK 21(9P21.3) MUTATED DEL PEAK 21(9P21.3) WILD-TYPE
  M0                          51                            81
  M1                           5                            13
  MX                           3                             8
D47V8, multiclass
     clus
vv    DEL PEAK 21(9P21.3) MUTATED DEL PEAK 21(9P21.3) WILD-TYPE
  I                             8                            17
  II                           19                            24
  III                          17                            31
  IV                           11                            18
D47V9, binary
[1] "tbl2"
                               cls
clus                            [,1] [,2]
  DEL PEAK 21(9P21.3) MUTATED     56    3
  DEL PEAK 21(9P21.3) WILD-TYPE  100    2
     clus
vv    DEL PEAK 21(9P21.3) MUTATED DEL PEAK 21(9P21.3) WILD-TYPE
  NO                            3                             2
  YES                          56                           100

Clustering(48) Variable = Del Peak 22(9q21.11) mutation analysis
D48V1, survival
                    TCGA-B7-5816                     TCGA-B7-5818 
"DEL PEAK 22(9Q21.11) WILD-TYPE" "DEL PEAK 22(9Q21.11) WILD-TYPE" 
                    TCGA-BR-6452                     TCGA-BR-6455 
"DEL PEAK 22(9Q21.11) WILD-TYPE" "DEL PEAK 22(9Q21.11) WILD-TYPE" 
                    TCGA-BR-6457                     TCGA-BR-6458 
  "DEL PEAK 22(9Q21.11) MUTATED"   "DEL PEAK 22(9Q21.11) MUTATED" 
                    TCGA-BR-6563                     TCGA-BR-6564 
"DEL PEAK 22(9Q21.11) WILD-TYPE" "DEL PEAK 22(9Q21.11) WILD-TYPE" 
                    TCGA-BR-6565                     TCGA-BR-6566 
"DEL PEAK 22(9Q21.11) WILD-TYPE" "DEL PEAK 22(9Q21.11) WILD-TYPE" 
                    TCGA-BR-6705                     TCGA-BR-6706 
"DEL PEAK 22(9Q21.11) WILD-TYPE" "DEL PEAK 22(9Q21.11) WILD-TYPE" 
                    TCGA-BR-6707                     TCGA-BR-6709 
"DEL PEAK 22(9Q21.11) WILD-TYPE" "DEL PEAK 22(9Q21.11) WILD-TYPE" 
                    TCGA-BR-6710                     TCGA-BR-6801 
"DEL PEAK 22(9Q21.11) WILD-TYPE" "DEL PEAK 22(9Q21.11) WILD-TYPE" 
                    TCGA-BR-6802                     TCGA-BR-6803 
"DEL PEAK 22(9Q21.11) WILD-TYPE"   "DEL PEAK 22(9Q21.11) MUTATED" 
                    TCGA-BR-6852                     TCGA-BR-7196 
"DEL PEAK 22(9Q21.11) WILD-TYPE" "DEL PEAK 22(9Q21.11) WILD-TYPE" 
                    TCGA-BR-7197                     TCGA-BR-7703 
"DEL PEAK 22(9Q21.11) WILD-TYPE" "DEL PEAK 22(9Q21.11) WILD-TYPE" 
                    TCGA-BR-7704                     TCGA-BR-7707 
"DEL PEAK 22(9Q21.11) WILD-TYPE" "DEL PEAK 22(9Q21.11) WILD-TYPE" 
                    TCGA-BR-7715                     TCGA-BR-7716 
  "DEL PEAK 22(9Q21.11) MUTATED"   "DEL PEAK 22(9Q21.11) MUTATED" 
                    TCGA-BR-7717                     TCGA-BR-7722 
"DEL PEAK 22(9Q21.11) WILD-TYPE" "DEL PEAK 22(9Q21.11) WILD-TYPE" 
                    TCGA-BR-7723                     TCGA-BR-7851 
  "DEL PEAK 22(9Q21.11) MUTATED" "DEL PEAK 22(9Q21.11) WILD-TYPE" 
                    TCGA-BR-7901                     TCGA-BR-7957 
  "DEL PEAK 22(9Q21.11) MUTATED" "DEL PEAK 22(9Q21.11) WILD-TYPE" 
                    TCGA-BR-7958                     TCGA-BR-7959 
"DEL PEAK 22(9Q21.11) WILD-TYPE" "DEL PEAK 22(9Q21.11) WILD-TYPE" 
                    TCGA-BR-8059                     TCGA-BR-8060 
"DEL PEAK 22(9Q21.11) WILD-TYPE" "DEL PEAK 22(9Q21.11) WILD-TYPE" 
                    TCGA-BR-8077                     TCGA-BR-8078 
"DEL PEAK 22(9Q21.11) WILD-TYPE" "DEL PEAK 22(9Q21.11) WILD-TYPE" 
                    TCGA-BR-8080                     TCGA-BR-8081 
"DEL PEAK 22(9Q21.11) WILD-TYPE" "DEL PEAK 22(9Q21.11) WILD-TYPE" 
                    TCGA-BR-8284                     TCGA-BR-8285 
"DEL PEAK 22(9Q21.11) WILD-TYPE" "DEL PEAK 22(9Q21.11) WILD-TYPE" 
                    TCGA-BR-8286                     TCGA-BR-8289 
"DEL PEAK 22(9Q21.11) WILD-TYPE" "DEL PEAK 22(9Q21.11) WILD-TYPE" 
                    TCGA-BR-8291                     TCGA-BR-8295 
"DEL PEAK 22(9Q21.11) WILD-TYPE" "DEL PEAK 22(9Q21.11) WILD-TYPE" 
                    TCGA-BR-8296                     TCGA-BR-8297 
"DEL PEAK 22(9Q21.11) WILD-TYPE" "DEL PEAK 22(9Q21.11) WILD-TYPE" 
                    TCGA-CD-5798                     TCGA-CD-5799 
"DEL PEAK 22(9Q21.11) WILD-TYPE"   "DEL PEAK 22(9Q21.11) MUTATED" 
                    TCGA-CD-5800                     TCGA-CD-5801 
  "DEL PEAK 22(9Q21.11) MUTATED" "DEL PEAK 22(9Q21.11) WILD-TYPE" 
                    TCGA-CD-5802                     TCGA-CD-5803 
  "DEL PEAK 22(9Q21.11) MUTATED"   "DEL PEAK 22(9Q21.11) MUTATED" 
                    TCGA-CG-4300                     TCGA-CG-4301 
"DEL PEAK 22(9Q21.11) WILD-TYPE" "DEL PEAK 22(9Q21.11) WILD-TYPE" 
                    TCGA-CG-4304                     TCGA-CG-4305 
  "DEL PEAK 22(9Q21.11) MUTATED" "DEL PEAK 22(9Q21.11) WILD-TYPE" 
                    TCGA-CG-4306                     TCGA-CG-4436 
"DEL PEAK 22(9Q21.11) WILD-TYPE" "DEL PEAK 22(9Q21.11) WILD-TYPE" 
                    TCGA-CG-4437                     TCGA-CG-4438 
"DEL PEAK 22(9Q21.11) WILD-TYPE"   "DEL PEAK 22(9Q21.11) MUTATED" 
                    TCGA-CG-4440                     TCGA-CG-4441 
"DEL PEAK 22(9Q21.11) WILD-TYPE" "DEL PEAK 22(9Q21.11) WILD-TYPE" 
                    TCGA-CG-4443                     TCGA-CG-4444 
"DEL PEAK 22(9Q21.11) WILD-TYPE" "DEL PEAK 22(9Q21.11) WILD-TYPE" 
                    TCGA-CG-4449                     TCGA-CG-4455 
"DEL PEAK 22(9Q21.11) WILD-TYPE"   "DEL PEAK 22(9Q21.11) MUTATED" 
                    TCGA-CG-4460                     TCGA-CG-4462 
"DEL PEAK 22(9Q21.11) WILD-TYPE" "DEL PEAK 22(9Q21.11) WILD-TYPE" 
                    TCGA-CG-4465                     TCGA-CG-4466 
"DEL PEAK 22(9Q21.11) WILD-TYPE" "DEL PEAK 22(9Q21.11) WILD-TYPE" 
                    TCGA-CG-4469                     TCGA-CG-4472 
"DEL PEAK 22(9Q21.11) WILD-TYPE" "DEL PEAK 22(9Q21.11) WILD-TYPE" 
                    TCGA-CG-4474                     TCGA-CG-4477 
"DEL PEAK 22(9Q21.11) WILD-TYPE" "DEL PEAK 22(9Q21.11) WILD-TYPE" 
                    TCGA-CG-5716                     TCGA-CG-5717 
"DEL PEAK 22(9Q21.11) WILD-TYPE" "DEL PEAK 22(9Q21.11) WILD-TYPE" 
                    TCGA-CG-5718                     TCGA-CG-5719 
"DEL PEAK 22(9Q21.11) WILD-TYPE" "DEL PEAK 22(9Q21.11) WILD-TYPE" 
                    TCGA-CG-5720                     TCGA-CG-5721 
"DEL PEAK 22(9Q21.11) WILD-TYPE" "DEL PEAK 22(9Q21.11) WILD-TYPE" 
                    TCGA-CG-5722                     TCGA-CG-5723 
"DEL PEAK 22(9Q21.11) WILD-TYPE" "DEL PEAK 22(9Q21.11) WILD-TYPE" 
                    TCGA-CG-5724                     TCGA-CG-5725 
  "DEL PEAK 22(9Q21.11) MUTATED" "DEL PEAK 22(9Q21.11) WILD-TYPE" 
                    TCGA-CG-5726                     TCGA-CG-5727 
"DEL PEAK 22(9Q21.11) WILD-TYPE" "DEL PEAK 22(9Q21.11) WILD-TYPE" 
                    TCGA-CG-5728                     TCGA-CG-5730 
"DEL PEAK 22(9Q21.11) WILD-TYPE" "DEL PEAK 22(9Q21.11) WILD-TYPE" 
                    TCGA-CG-5732                     TCGA-CG-5733 
"DEL PEAK 22(9Q21.11) WILD-TYPE" "DEL PEAK 22(9Q21.11) WILD-TYPE" 
                    TCGA-CG-5734                     TCGA-D7-5577 
"DEL PEAK 22(9Q21.11) WILD-TYPE" "DEL PEAK 22(9Q21.11) WILD-TYPE" 
                    TCGA-D7-5578                     TCGA-D7-5579 
"DEL PEAK 22(9Q21.11) WILD-TYPE" "DEL PEAK 22(9Q21.11) WILD-TYPE" 
                    TCGA-D7-6518                     TCGA-D7-6519 
"DEL PEAK 22(9Q21.11) WILD-TYPE"   "DEL PEAK 22(9Q21.11) MUTATED" 
                    TCGA-D7-6520                     TCGA-D7-6521 
  "DEL PEAK 22(9Q21.11) MUTATED"   "DEL PEAK 22(9Q21.11) MUTATED" 
                    TCGA-D7-6522                     TCGA-D7-6524 
"DEL PEAK 22(9Q21.11) WILD-TYPE" "DEL PEAK 22(9Q21.11) WILD-TYPE" 
                    TCGA-D7-6525                     TCGA-D7-6526 
  "DEL PEAK 22(9Q21.11) MUTATED" "DEL PEAK 22(9Q21.11) WILD-TYPE" 
                    TCGA-D7-6527                     TCGA-D7-6528 
  "DEL PEAK 22(9Q21.11) MUTATED" "DEL PEAK 22(9Q21.11) WILD-TYPE" 
                    TCGA-D7-6815                     TCGA-D7-6817 
  "DEL PEAK 22(9Q21.11) MUTATED" "DEL PEAK 22(9Q21.11) WILD-TYPE" 
                    TCGA-D7-6818                     TCGA-D7-6820 
"DEL PEAK 22(9Q21.11) WILD-TYPE" "DEL PEAK 22(9Q21.11) WILD-TYPE" 
                    TCGA-D7-6822                     TCGA-EQ-5647 
"DEL PEAK 22(9Q21.11) WILD-TYPE" "DEL PEAK 22(9Q21.11) WILD-TYPE" 
                    TCGA-EQ-8122                     TCGA-F1-6177 
"DEL PEAK 22(9Q21.11) WILD-TYPE" "DEL PEAK 22(9Q21.11) WILD-TYPE" 
                    TCGA-F1-6874                     TCGA-F1-6875 
"DEL PEAK 22(9Q21.11) WILD-TYPE"   "DEL PEAK 22(9Q21.11) MUTATED" 
                    TCGA-FP-7735                     TCGA-FP-7829 
"DEL PEAK 22(9Q21.11) WILD-TYPE" "DEL PEAK 22(9Q21.11) WILD-TYPE" 
                    TCGA-FP-7916                     TCGA-FP-7998 
"DEL PEAK 22(9Q21.11) WILD-TYPE" "DEL PEAK 22(9Q21.11) WILD-TYPE" 
                    TCGA-HJ-7597                     TCGA-IN-7806 
"DEL PEAK 22(9Q21.11) WILD-TYPE" "DEL PEAK 22(9Q21.11) WILD-TYPE" 
                    TCGA-IN-7808                     TCGA-IP-7968 
"DEL PEAK 22(9Q21.11) WILD-TYPE" "DEL PEAK 22(9Q21.11) WILD-TYPE" 
                    TCGA-B7-5816                     TCGA-B7-5818 
"DEL PEAK 22(9Q21.11) WILD-TYPE" "DEL PEAK 22(9Q21.11) WILD-TYPE" 
                    TCGA-BR-6452                     TCGA-BR-6455 
"DEL PEAK 22(9Q21.11) WILD-TYPE" "DEL PEAK 22(9Q21.11) WILD-TYPE" 
                    TCGA-BR-6457                     TCGA-BR-6458 
  "DEL PEAK 22(9Q21.11) MUTATED"   "DEL PEAK 22(9Q21.11) MUTATED" 
                    TCGA-BR-6563                     TCGA-BR-6564 
"DEL PEAK 22(9Q21.11) WILD-TYPE" "DEL PEAK 22(9Q21.11) WILD-TYPE" 
                    TCGA-BR-6565                     TCGA-BR-6566 
"DEL PEAK 22(9Q21.11) WILD-TYPE" "DEL PEAK 22(9Q21.11) WILD-TYPE" 
                    TCGA-BR-6705                     TCGA-BR-6706 
"DEL PEAK 22(9Q21.11) WILD-TYPE" "DEL PEAK 22(9Q21.11) WILD-TYPE" 
                    TCGA-BR-6707                     TCGA-BR-6709 
"DEL PEAK 22(9Q21.11) WILD-TYPE" "DEL PEAK 22(9Q21.11) WILD-TYPE" 
                    TCGA-BR-6710                     TCGA-BR-6801 
"DEL PEAK 22(9Q21.11) WILD-TYPE" "DEL PEAK 22(9Q21.11) WILD-TYPE" 
                    TCGA-BR-6802                     TCGA-BR-6803 
"DEL PEAK 22(9Q21.11) WILD-TYPE"   "DEL PEAK 22(9Q21.11) MUTATED" 
                    TCGA-BR-6852                     TCGA-BR-7196 
"DEL PEAK 22(9Q21.11) WILD-TYPE" "DEL PEAK 22(9Q21.11) WILD-TYPE" 
                    TCGA-BR-7197                     TCGA-BR-7703 
"DEL PEAK 22(9Q21.11) WILD-TYPE" "DEL PEAK 22(9Q21.11) WILD-TYPE" 
                    TCGA-BR-7704                     TCGA-BR-7707 
"DEL PEAK 22(9Q21.11) WILD-TYPE" "DEL PEAK 22(9Q21.11) WILD-TYPE" 
                    TCGA-BR-7715                     TCGA-BR-7716 
  "DEL PEAK 22(9Q21.11) MUTATED"   "DEL PEAK 22(9Q21.11) MUTATED" 
                    TCGA-BR-7717                     TCGA-BR-7722 
"DEL PEAK 22(9Q21.11) WILD-TYPE" "DEL PEAK 22(9Q21.11) WILD-TYPE" 
                    TCGA-BR-7723                     TCGA-BR-7851 
  "DEL PEAK 22(9Q21.11) MUTATED" "DEL PEAK 22(9Q21.11) WILD-TYPE" 
                    TCGA-BR-7901                     TCGA-BR-7957 
  "DEL PEAK 22(9Q21.11) MUTATED" "DEL PEAK 22(9Q21.11) WILD-TYPE" 
                    TCGA-BR-7958                     TCGA-BR-7959 
"DEL PEAK 22(9Q21.11) WILD-TYPE" "DEL PEAK 22(9Q21.11) WILD-TYPE" 
                    TCGA-BR-8059                     TCGA-BR-8060 
"DEL PEAK 22(9Q21.11) WILD-TYPE" "DEL PEAK 22(9Q21.11) WILD-TYPE" 
                    TCGA-BR-8077                     TCGA-BR-8078 
"DEL PEAK 22(9Q21.11) WILD-TYPE" "DEL PEAK 22(9Q21.11) WILD-TYPE" 
                    TCGA-BR-8080                     TCGA-BR-8081 
"DEL PEAK 22(9Q21.11) WILD-TYPE" "DEL PEAK 22(9Q21.11) WILD-TYPE" 
                    TCGA-BR-8284                     TCGA-BR-8285 
"DEL PEAK 22(9Q21.11) WILD-TYPE" "DEL PEAK 22(9Q21.11) WILD-TYPE" 
                    TCGA-BR-8286                     TCGA-BR-8289 
"DEL PEAK 22(9Q21.11) WILD-TYPE" "DEL PEAK 22(9Q21.11) WILD-TYPE" 
                    TCGA-BR-8291                     TCGA-BR-8295 
"DEL PEAK 22(9Q21.11) WILD-TYPE" "DEL PEAK 22(9Q21.11) WILD-TYPE" 
                    TCGA-BR-8296                     TCGA-BR-8297 
"DEL PEAK 22(9Q21.11) WILD-TYPE" "DEL PEAK 22(9Q21.11) WILD-TYPE" 
                    TCGA-CD-5798                     TCGA-CD-5799 
"DEL PEAK 22(9Q21.11) WILD-TYPE"   "DEL PEAK 22(9Q21.11) MUTATED" 
                    TCGA-CD-5800                     TCGA-CD-5801 
  "DEL PEAK 22(9Q21.11) MUTATED" "DEL PEAK 22(9Q21.11) WILD-TYPE" 
                    TCGA-CD-5802                     TCGA-CD-5803 
  "DEL PEAK 22(9Q21.11) MUTATED"   "DEL PEAK 22(9Q21.11) MUTATED" 
                    TCGA-CG-4300                     TCGA-CG-4301 
"DEL PEAK 22(9Q21.11) WILD-TYPE" "DEL PEAK 22(9Q21.11) WILD-TYPE" 
                    TCGA-CG-4304                     TCGA-CG-4305 
  "DEL PEAK 22(9Q21.11) MUTATED" "DEL PEAK 22(9Q21.11) WILD-TYPE" 
                    TCGA-CG-4306                     TCGA-CG-4436 
"DEL PEAK 22(9Q21.11) WILD-TYPE" "DEL PEAK 22(9Q21.11) WILD-TYPE" 
                    TCGA-CG-4437                     TCGA-CG-4438 
"DEL PEAK 22(9Q21.11) WILD-TYPE"   "DEL PEAK 22(9Q21.11) MUTATED" 
                    TCGA-CG-4440                     TCGA-CG-4441 
"DEL PEAK 22(9Q21.11) WILD-TYPE" "DEL PEAK 22(9Q21.11) WILD-TYPE" 
                    TCGA-CG-4443                     TCGA-CG-4444 
"DEL PEAK 22(9Q21.11) WILD-TYPE" "DEL PEAK 22(9Q21.11) WILD-TYPE" 
                    TCGA-CG-4449                     TCGA-CG-4455 
"DEL PEAK 22(9Q21.11) WILD-TYPE"   "DEL PEAK 22(9Q21.11) MUTATED" 
                    TCGA-CG-4460                     TCGA-CG-4462 
"DEL PEAK 22(9Q21.11) WILD-TYPE" "DEL PEAK 22(9Q21.11) WILD-TYPE" 
                    TCGA-CG-4465                     TCGA-CG-4466 
"DEL PEAK 22(9Q21.11) WILD-TYPE" "DEL PEAK 22(9Q21.11) WILD-TYPE" 
                    TCGA-CG-4469                     TCGA-CG-4472 
"DEL PEAK 22(9Q21.11) WILD-TYPE" "DEL PEAK 22(9Q21.11) WILD-TYPE" 
                    TCGA-CG-4474                     TCGA-CG-4477 
"DEL PEAK 22(9Q21.11) WILD-TYPE" "DEL PEAK 22(9Q21.11) WILD-TYPE" 
                    TCGA-CG-5716                     TCGA-CG-5717 
"DEL PEAK 22(9Q21.11) WILD-TYPE" "DEL PEAK 22(9Q21.11) WILD-TYPE" 
                    TCGA-CG-5718                     TCGA-CG-5719 
"DEL PEAK 22(9Q21.11) WILD-TYPE" "DEL PEAK 22(9Q21.11) WILD-TYPE" 
                    TCGA-CG-5720                     TCGA-CG-5721 
"DEL PEAK 22(9Q21.11) WILD-TYPE" "DEL PEAK 22(9Q21.11) WILD-TYPE" 
                    TCGA-CG-5722                     TCGA-CG-5723 
"DEL PEAK 22(9Q21.11) WILD-TYPE" "DEL PEAK 22(9Q21.11) WILD-TYPE" 
                    TCGA-CG-5724                     TCGA-CG-5725 
  "DEL PEAK 22(9Q21.11) MUTATED" "DEL PEAK 22(9Q21.11) WILD-TYPE" 
                    TCGA-CG-5726                     TCGA-CG-5727 
"DEL PEAK 22(9Q21.11) WILD-TYPE" "DEL PEAK 22(9Q21.11) WILD-TYPE" 
                    TCGA-CG-5728                     TCGA-CG-5730 
"DEL PEAK 22(9Q21.11) WILD-TYPE" "DEL PEAK 22(9Q21.11) WILD-TYPE" 
                    TCGA-CG-5732                     TCGA-CG-5733 
"DEL PEAK 22(9Q21.11) WILD-TYPE" "DEL PEAK 22(9Q21.11) WILD-TYPE" 
                    TCGA-CG-5734                     TCGA-D7-5577 
"DEL PEAK 22(9Q21.11) WILD-TYPE" "DEL PEAK 22(9Q21.11) WILD-TYPE" 
                    TCGA-D7-5578                     TCGA-D7-5579 
"DEL PEAK 22(9Q21.11) WILD-TYPE" "DEL PEAK 22(9Q21.11) WILD-TYPE" 
                    TCGA-D7-6518                     TCGA-D7-6519 
"DEL PEAK 22(9Q21.11) WILD-TYPE"   "DEL PEAK 22(9Q21.11) MUTATED" 
                    TCGA-D7-6520                     TCGA-D7-6521 
  "DEL PEAK 22(9Q21.11) MUTATED"   "DEL PEAK 22(9Q21.11) MUTATED" 
                    TCGA-D7-6522                     TCGA-D7-6524 
"DEL PEAK 22(9Q21.11) WILD-TYPE" "DEL PEAK 22(9Q21.11) WILD-TYPE" 
                    TCGA-D7-6525                     TCGA-D7-6526 
  "DEL PEAK 22(9Q21.11) MUTATED" "DEL PEAK 22(9Q21.11) WILD-TYPE" 
                    TCGA-D7-6527                     TCGA-D7-6528 
  "DEL PEAK 22(9Q21.11) MUTATED" "DEL PEAK 22(9Q21.11) WILD-TYPE" 
                    TCGA-D7-6815                     TCGA-D7-6817 
  "DEL PEAK 22(9Q21.11) MUTATED" "DEL PEAK 22(9Q21.11) WILD-TYPE" 
                    TCGA-D7-6818                     TCGA-D7-6820 
"DEL PEAK 22(9Q21.11) WILD-TYPE" "DEL PEAK 22(9Q21.11) WILD-TYPE" 
                    TCGA-D7-6822                     TCGA-EQ-5647 
"DEL PEAK 22(9Q21.11) WILD-TYPE" "DEL PEAK 22(9Q21.11) WILD-TYPE" 
                    TCGA-EQ-8122                     TCGA-F1-6177 
"DEL PEAK 22(9Q21.11) WILD-TYPE" "DEL PEAK 22(9Q21.11) WILD-TYPE" 
                    TCGA-F1-6874                     TCGA-F1-6875 
"DEL PEAK 22(9Q21.11) WILD-TYPE"   "DEL PEAK 22(9Q21.11) MUTATED" 
                    TCGA-FP-7735                     TCGA-FP-7829 
"DEL PEAK 22(9Q21.11) WILD-TYPE" "DEL PEAK 22(9Q21.11) WILD-TYPE" 
                    TCGA-FP-7916                     TCGA-FP-7998 
"DEL PEAK 22(9Q21.11) WILD-TYPE" "DEL PEAK 22(9Q21.11) WILD-TYPE" 
                    TCGA-HJ-7597                     TCGA-IN-7806 
"DEL PEAK 22(9Q21.11) WILD-TYPE" "DEL PEAK 22(9Q21.11) WILD-TYPE" 
                    TCGA-IN-7808                     TCGA-IP-7968 
"DEL PEAK 22(9Q21.11) WILD-TYPE" "DEL PEAK 22(9Q21.11) WILD-TYPE" 
                    TCGA-B7-5816                     TCGA-B7-5818 
"DEL PEAK 22(9Q21.11) WILD-TYPE" "DEL PEAK 22(9Q21.11) WILD-TYPE" 
                    TCGA-BR-6452                     TCGA-BR-6455 
"DEL PEAK 22(9Q21.11) WILD-TYPE" "DEL PEAK 22(9Q21.11) WILD-TYPE" 
                    TCGA-BR-6457                     TCGA-BR-6458 
  "DEL PEAK 22(9Q21.11) MUTATED"   "DEL PEAK 22(9Q21.11) MUTATED" 
                    TCGA-BR-6563                     TCGA-BR-6564 
"DEL PEAK 22(9Q21.11) WILD-TYPE" "DEL PEAK 22(9Q21.11) WILD-TYPE" 
                    TCGA-BR-6565                     TCGA-BR-6566 
"DEL PEAK 22(9Q21.11) WILD-TYPE" "DEL PEAK 22(9Q21.11) WILD-TYPE" 
                    TCGA-BR-6705                     TCGA-BR-6706 
"DEL PEAK 22(9Q21.11) WILD-TYPE" "DEL PEAK 22(9Q21.11) WILD-TYPE" 
                    TCGA-BR-6707                     TCGA-BR-6709 
"DEL PEAK 22(9Q21.11) WILD-TYPE" "DEL PEAK 22(9Q21.11) WILD-TYPE" 
                    TCGA-BR-6710                     TCGA-BR-6801 
"DEL PEAK 22(9Q21.11) WILD-TYPE" "DEL PEAK 22(9Q21.11) WILD-TYPE" 
                    TCGA-BR-6802                     TCGA-BR-6803 
"DEL PEAK 22(9Q21.11) WILD-TYPE"   "DEL PEAK 22(9Q21.11) MUTATED" 
                    TCGA-BR-6852                     TCGA-BR-7196 
"DEL PEAK 22(9Q21.11) WILD-TYPE" "DEL PEAK 22(9Q21.11) WILD-TYPE" 
                    TCGA-BR-7197                     TCGA-BR-7703 
"DEL PEAK 22(9Q21.11) WILD-TYPE" "DEL PEAK 22(9Q21.11) WILD-TYPE" 
                    TCGA-BR-7704                     TCGA-BR-7707 
"DEL PEAK 22(9Q21.11) WILD-TYPE" "DEL PEAK 22(9Q21.11) WILD-TYPE" 
                    TCGA-BR-7715                     TCGA-BR-7716 
  "DEL PEAK 22(9Q21.11) MUTATED"   "DEL PEAK 22(9Q21.11) MUTATED" 
                    TCGA-BR-7717                     TCGA-BR-7722 
"DEL PEAK 22(9Q21.11) WILD-TYPE" "DEL PEAK 22(9Q21.11) WILD-TYPE" 
                    TCGA-BR-7723                     TCGA-BR-7851 
  "DEL PEAK 22(9Q21.11) MUTATED" "DEL PEAK 22(9Q21.11) WILD-TYPE" 
                    TCGA-BR-7901                     TCGA-BR-7957 
  "DEL PEAK 22(9Q21.11) MUTATED" "DEL PEAK 22(9Q21.11) WILD-TYPE" 
                    TCGA-BR-7958                     TCGA-BR-7959 
"DEL PEAK 22(9Q21.11) WILD-TYPE" "DEL PEAK 22(9Q21.11) WILD-TYPE" 
                    TCGA-BR-8059                     TCGA-BR-8060 
"DEL PEAK 22(9Q21.11) WILD-TYPE" "DEL PEAK 22(9Q21.11) WILD-TYPE" 
                    TCGA-BR-8077                     TCGA-BR-8078 
"DEL PEAK 22(9Q21.11) WILD-TYPE" "DEL PEAK 22(9Q21.11) WILD-TYPE" 
                    TCGA-BR-8080                     TCGA-BR-8081 
"DEL PEAK 22(9Q21.11) WILD-TYPE" "DEL PEAK 22(9Q21.11) WILD-TYPE" 
                    TCGA-BR-8284                     TCGA-BR-8285 
"DEL PEAK 22(9Q21.11) WILD-TYPE" "DEL PEAK 22(9Q21.11) WILD-TYPE" 
                    TCGA-BR-8286                     TCGA-BR-8289 
"DEL PEAK 22(9Q21.11) WILD-TYPE" "DEL PEAK 22(9Q21.11) WILD-TYPE" 
                    TCGA-BR-8291                     TCGA-BR-8295 
"DEL PEAK 22(9Q21.11) WILD-TYPE" "DEL PEAK 22(9Q21.11) WILD-TYPE" 
                    TCGA-BR-8296                     TCGA-BR-8297 
"DEL PEAK 22(9Q21.11) WILD-TYPE" "DEL PEAK 22(9Q21.11) WILD-TYPE" 
                    TCGA-CD-5798                     TCGA-CD-5799 
"DEL PEAK 22(9Q21.11) WILD-TYPE"   "DEL PEAK 22(9Q21.11) MUTATED" 
                    TCGA-CD-5800                     TCGA-CD-5801 
  "DEL PEAK 22(9Q21.11) MUTATED" "DEL PEAK 22(9Q21.11) WILD-TYPE" 
                    TCGA-CD-5802                     TCGA-CD-5803 
  "DEL PEAK 22(9Q21.11) MUTATED"   "DEL PEAK 22(9Q21.11) MUTATED" 
                    TCGA-CG-4300                     TCGA-CG-4301 
"DEL PEAK 22(9Q21.11) WILD-TYPE" "DEL PEAK 22(9Q21.11) WILD-TYPE" 
                    TCGA-CG-4304                     TCGA-CG-4305 
  "DEL PEAK 22(9Q21.11) MUTATED" "DEL PEAK 22(9Q21.11) WILD-TYPE" 
                    TCGA-CG-4306                     TCGA-CG-4436 
"DEL PEAK 22(9Q21.11) WILD-TYPE" "DEL PEAK 22(9Q21.11) WILD-TYPE" 
                    TCGA-CG-4437                     TCGA-CG-4438 
"DEL PEAK 22(9Q21.11) WILD-TYPE"   "DEL PEAK 22(9Q21.11) MUTATED" 
                    TCGA-CG-4440                     TCGA-CG-4441 
"DEL PEAK 22(9Q21.11) WILD-TYPE" "DEL PEAK 22(9Q21.11) WILD-TYPE" 
                    TCGA-CG-4443                     TCGA-CG-4444 
"DEL PEAK 22(9Q21.11) WILD-TYPE" "DEL PEAK 22(9Q21.11) WILD-TYPE" 
                    TCGA-CG-4449                     TCGA-CG-4455 
"DEL PEAK 22(9Q21.11) WILD-TYPE"   "DEL PEAK 22(9Q21.11) MUTATED" 
                    TCGA-CG-4460                     TCGA-CG-4462 
"DEL PEAK 22(9Q21.11) WILD-TYPE" "DEL PEAK 22(9Q21.11) WILD-TYPE" 
                    TCGA-CG-4465                     TCGA-CG-4466 
"DEL PEAK 22(9Q21.11) WILD-TYPE" "DEL PEAK 22(9Q21.11) WILD-TYPE" 
                    TCGA-CG-4469                     TCGA-CG-4472 
"DEL PEAK 22(9Q21.11) WILD-TYPE" "DEL PEAK 22(9Q21.11) WILD-TYPE" 
                    TCGA-CG-4474                     TCGA-CG-4477 
"DEL PEAK 22(9Q21.11) WILD-TYPE" "DEL PEAK 22(9Q21.11) WILD-TYPE" 
                    TCGA-CG-5716                     TCGA-CG-5717 
"DEL PEAK 22(9Q21.11) WILD-TYPE" "DEL PEAK 22(9Q21.11) WILD-TYPE" 
                    TCGA-CG-5718                     TCGA-CG-5719 
"DEL PEAK 22(9Q21.11) WILD-TYPE" "DEL PEAK 22(9Q21.11) WILD-TYPE" 
                    TCGA-CG-5720                     TCGA-CG-5721 
"DEL PEAK 22(9Q21.11) WILD-TYPE" "DEL PEAK 22(9Q21.11) WILD-TYPE" 
                    TCGA-CG-5722                     TCGA-CG-5723 
"DEL PEAK 22(9Q21.11) WILD-TYPE" "DEL PEAK 22(9Q21.11) WILD-TYPE" 
                    TCGA-CG-5724                     TCGA-CG-5725 
  "DEL PEAK 22(9Q21.11) MUTATED" "DEL PEAK 22(9Q21.11) WILD-TYPE" 
                    TCGA-CG-5726                     TCGA-CG-5727 
"DEL PEAK 22(9Q21.11) WILD-TYPE" "DEL PEAK 22(9Q21.11) WILD-TYPE" 
                    TCGA-CG-5728                     TCGA-CG-5730 
"DEL PEAK 22(9Q21.11) WILD-TYPE" "DEL PEAK 22(9Q21.11) WILD-TYPE" 
                    TCGA-CG-5732                     TCGA-CG-5733 
"DEL PEAK 22(9Q21.11) WILD-TYPE" "DEL PEAK 22(9Q21.11) WILD-TYPE" 
                    TCGA-CG-5734                     TCGA-D7-5577 
"DEL PEAK 22(9Q21.11) WILD-TYPE" "DEL PEAK 22(9Q21.11) WILD-TYPE" 
                    TCGA-D7-5578                     TCGA-D7-5579 
"DEL PEAK 22(9Q21.11) WILD-TYPE" "DEL PEAK 22(9Q21.11) WILD-TYPE" 
                    TCGA-D7-6518                     TCGA-D7-6519 
"DEL PEAK 22(9Q21.11) WILD-TYPE"   "DEL PEAK 22(9Q21.11) MUTATED" 
                    TCGA-D7-6520                     TCGA-D7-6521 
  "DEL PEAK 22(9Q21.11) MUTATED"   "DEL PEAK 22(9Q21.11) MUTATED" 
                    TCGA-D7-6522                     TCGA-D7-6524 
"DEL PEAK 22(9Q21.11) WILD-TYPE" "DEL PEAK 22(9Q21.11) WILD-TYPE" 
                    TCGA-D7-6525                     TCGA-D7-6526 
  "DEL PEAK 22(9Q21.11) MUTATED" "DEL PEAK 22(9Q21.11) WILD-TYPE" 
                    TCGA-D7-6527                     TCGA-D7-6528 
  "DEL PEAK 22(9Q21.11) MUTATED" "DEL PEAK 22(9Q21.11) WILD-TYPE" 
                    TCGA-D7-6815                     TCGA-D7-6817 
  "DEL PEAK 22(9Q21.11) MUTATED" "DEL PEAK 22(9Q21.11) WILD-TYPE" 
                    TCGA-D7-6818                     TCGA-D7-6820 
"DEL PEAK 22(9Q21.11) WILD-TYPE" "DEL PEAK 22(9Q21.11) WILD-TYPE" 
                    TCGA-D7-6822                     TCGA-EQ-5647 
"DEL PEAK 22(9Q21.11) WILD-TYPE" "DEL PEAK 22(9Q21.11) WILD-TYPE" 
                    TCGA-EQ-8122                     TCGA-F1-6177 
"DEL PEAK 22(9Q21.11) WILD-TYPE" "DEL PEAK 22(9Q21.11) WILD-TYPE" 
                    TCGA-F1-6874                     TCGA-F1-6875 
"DEL PEAK 22(9Q21.11) WILD-TYPE"   "DEL PEAK 22(9Q21.11) MUTATED" 
                    TCGA-FP-7735                     TCGA-FP-7829 
"DEL PEAK 22(9Q21.11) WILD-TYPE" "DEL PEAK 22(9Q21.11) WILD-TYPE" 
                    TCGA-FP-7916                     TCGA-FP-7998 
"DEL PEAK 22(9Q21.11) WILD-TYPE" "DEL PEAK 22(9Q21.11) WILD-TYPE" 
                    TCGA-HJ-7597                     TCGA-IN-7806 
"DEL PEAK 22(9Q21.11) WILD-TYPE" "DEL PEAK 22(9Q21.11) WILD-TYPE" 
                    TCGA-IN-7808                     TCGA-IP-7968 
"DEL PEAK 22(9Q21.11) WILD-TYPE" "DEL PEAK 22(9Q21.11) WILD-TYPE" 
[1] "hr=" "4"  
D48V2, continuous
D48V3, binary
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  DEL PEAK 22(9Q21.11) MUTATED     12   19
  DEL PEAK 22(9Q21.11) WILD-TYPE   53   77
        clus
vv       DEL PEAK 22(9Q21.11) MUTATED DEL PEAK 22(9Q21.11) WILD-TYPE
  FEMALE                           12                             53
  MALE                             19                             77
D48V4, multiclass
D48V5, multiclass
    clus
vv   DEL PEAK 22(9Q21.11) MUTATED DEL PEAK 22(9Q21.11) WILD-TYPE
  T1                            0                              6
  T2                           11                             42
  T3                           14                             45
  T4                            3                             30
D48V6, multiclass
    clus
vv   DEL PEAK 22(9Q21.11) MUTATED DEL PEAK 22(9Q21.11) WILD-TYPE
  N0                            9                             41
  N1                           11                             46
  N2                            6                             18
  N3                            3                             16
D48V7, multiclass
    clus
vv   DEL PEAK 22(9Q21.11) MUTATED DEL PEAK 22(9Q21.11) WILD-TYPE
  M0                           30                            102
  M1                            1                             17
  MX                            0                             11
D48V8, multiclass
     clus
vv    DEL PEAK 22(9Q21.11) MUTATED DEL PEAK 22(9Q21.11) WILD-TYPE
  I                              2                             23
  II                            13                             30
  III                            9                             39
  IV                             4                             25
D48V9, binary
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  DEL PEAK 22(9Q21.11) MUTATED     29    2
  DEL PEAK 22(9Q21.11) WILD-TYPE  127    3
     clus
vv    DEL PEAK 22(9Q21.11) MUTATED DEL PEAK 22(9Q21.11) WILD-TYPE
  NO                             2                              3
  YES                           29                            127

Clustering(49) Variable = Del Peak 23(10p14) mutation analysis
D49V1, survival
                  TCGA-B7-5816                   TCGA-B7-5818 
"DEL PEAK 23(10P14) WILD-TYPE" "DEL PEAK 23(10P14) WILD-TYPE" 
                  TCGA-BR-6452                   TCGA-BR-6455 
"DEL PEAK 23(10P14) WILD-TYPE" "DEL PEAK 23(10P14) WILD-TYPE" 
                  TCGA-BR-6457                   TCGA-BR-6458 
"DEL PEAK 23(10P14) WILD-TYPE"   "DEL PEAK 23(10P14) MUTATED" 
                  TCGA-BR-6563                   TCGA-BR-6564 
"DEL PEAK 23(10P14) WILD-TYPE"   "DEL PEAK 23(10P14) MUTATED" 
                  TCGA-BR-6565                   TCGA-BR-6566 
"DEL PEAK 23(10P14) WILD-TYPE" "DEL PEAK 23(10P14) WILD-TYPE" 
                  TCGA-BR-6705                   TCGA-BR-6706 
"DEL PEAK 23(10P14) WILD-TYPE" "DEL PEAK 23(10P14) WILD-TYPE" 
                  TCGA-BR-6707                   TCGA-BR-6709 
"DEL PEAK 23(10P14) WILD-TYPE" "DEL PEAK 23(10P14) WILD-TYPE" 
                  TCGA-BR-6710                   TCGA-BR-6801 
"DEL PEAK 23(10P14) WILD-TYPE" "DEL PEAK 23(10P14) WILD-TYPE" 
                  TCGA-BR-6802                   TCGA-BR-6803 
"DEL PEAK 23(10P14) WILD-TYPE" "DEL PEAK 23(10P14) WILD-TYPE" 
                  TCGA-BR-6852                   TCGA-BR-7196 
"DEL PEAK 23(10P14) WILD-TYPE" "DEL PEAK 23(10P14) WILD-TYPE" 
                  TCGA-BR-7197                   TCGA-BR-7703 
"DEL PEAK 23(10P14) WILD-TYPE" "DEL PEAK 23(10P14) WILD-TYPE" 
                  TCGA-BR-7704                   TCGA-BR-7707 
"DEL PEAK 23(10P14) WILD-TYPE" "DEL PEAK 23(10P14) WILD-TYPE" 
                  TCGA-BR-7715                   TCGA-BR-7716 
"DEL PEAK 23(10P14) WILD-TYPE" "DEL PEAK 23(10P14) WILD-TYPE" 
                  TCGA-BR-7717                   TCGA-BR-7722 
"DEL PEAK 23(10P14) WILD-TYPE" "DEL PEAK 23(10P14) WILD-TYPE" 
                  TCGA-BR-7723                   TCGA-BR-7851 
"DEL PEAK 23(10P14) WILD-TYPE" "DEL PEAK 23(10P14) WILD-TYPE" 
                  TCGA-BR-7901                   TCGA-BR-7957 
  "DEL PEAK 23(10P14) MUTATED" "DEL PEAK 23(10P14) WILD-TYPE" 
                  TCGA-BR-7958                   TCGA-BR-7959 
"DEL PEAK 23(10P14) WILD-TYPE" "DEL PEAK 23(10P14) WILD-TYPE" 
                  TCGA-BR-8059                   TCGA-BR-8060 
"DEL PEAK 23(10P14) WILD-TYPE" "DEL PEAK 23(10P14) WILD-TYPE" 
                  TCGA-BR-8077                   TCGA-BR-8078 
"DEL PEAK 23(10P14) WILD-TYPE" "DEL PEAK 23(10P14) WILD-TYPE" 
                  TCGA-BR-8080                   TCGA-BR-8081 
"DEL PEAK 23(10P14) WILD-TYPE" "DEL PEAK 23(10P14) WILD-TYPE" 
                  TCGA-BR-8284                   TCGA-BR-8285 
"DEL PEAK 23(10P14) WILD-TYPE" "DEL PEAK 23(10P14) WILD-TYPE" 
                  TCGA-BR-8286                   TCGA-BR-8289 
"DEL PEAK 23(10P14) WILD-TYPE" "DEL PEAK 23(10P14) WILD-TYPE" 
                  TCGA-BR-8291                   TCGA-BR-8295 
"DEL PEAK 23(10P14) WILD-TYPE" "DEL PEAK 23(10P14) WILD-TYPE" 
                  TCGA-BR-8296                   TCGA-BR-8297 
"DEL PEAK 23(10P14) WILD-TYPE" "DEL PEAK 23(10P14) WILD-TYPE" 
                  TCGA-CD-5798                   TCGA-CD-5799 
"DEL PEAK 23(10P14) WILD-TYPE"   "DEL PEAK 23(10P14) MUTATED" 
                  TCGA-CD-5800                   TCGA-CD-5801 
"DEL PEAK 23(10P14) WILD-TYPE" "DEL PEAK 23(10P14) WILD-TYPE" 
                  TCGA-CD-5802                   TCGA-CD-5803 
"DEL PEAK 23(10P14) WILD-TYPE" "DEL PEAK 23(10P14) WILD-TYPE" 
                  TCGA-CG-4300                   TCGA-CG-4301 
"DEL PEAK 23(10P14) WILD-TYPE"   "DEL PEAK 23(10P14) MUTATED" 
                  TCGA-CG-4304                   TCGA-CG-4305 
  "DEL PEAK 23(10P14) MUTATED" "DEL PEAK 23(10P14) WILD-TYPE" 
                  TCGA-CG-4306                   TCGA-CG-4436 
"DEL PEAK 23(10P14) WILD-TYPE" "DEL PEAK 23(10P14) WILD-TYPE" 
                  TCGA-CG-4437                   TCGA-CG-4438 
"DEL PEAK 23(10P14) WILD-TYPE" "DEL PEAK 23(10P14) WILD-TYPE" 
                  TCGA-CG-4440                   TCGA-CG-4441 
"DEL PEAK 23(10P14) WILD-TYPE" "DEL PEAK 23(10P14) WILD-TYPE" 
                  TCGA-CG-4443                   TCGA-CG-4444 
"DEL PEAK 23(10P14) WILD-TYPE" "DEL PEAK 23(10P14) WILD-TYPE" 
                  TCGA-CG-4449                   TCGA-CG-4455 
"DEL PEAK 23(10P14) WILD-TYPE"   "DEL PEAK 23(10P14) MUTATED" 
                  TCGA-CG-4460                   TCGA-CG-4462 
"DEL PEAK 23(10P14) WILD-TYPE" "DEL PEAK 23(10P14) WILD-TYPE" 
                  TCGA-CG-4465                   TCGA-CG-4466 
"DEL PEAK 23(10P14) WILD-TYPE" "DEL PEAK 23(10P14) WILD-TYPE" 
                  TCGA-CG-4469                   TCGA-CG-4472 
"DEL PEAK 23(10P14) WILD-TYPE" "DEL PEAK 23(10P14) WILD-TYPE" 
                  TCGA-CG-4474                   TCGA-CG-4477 
"DEL PEAK 23(10P14) WILD-TYPE" "DEL PEAK 23(10P14) WILD-TYPE" 
                  TCGA-CG-5716                   TCGA-CG-5717 
"DEL PEAK 23(10P14) WILD-TYPE" "DEL PEAK 23(10P14) WILD-TYPE" 
                  TCGA-CG-5718                   TCGA-CG-5719 
"DEL PEAK 23(10P14) WILD-TYPE" "DEL PEAK 23(10P14) WILD-TYPE" 
                  TCGA-CG-5720                   TCGA-CG-5721 
"DEL PEAK 23(10P14) WILD-TYPE" "DEL PEAK 23(10P14) WILD-TYPE" 
                  TCGA-CG-5722                   TCGA-CG-5723 
"DEL PEAK 23(10P14) WILD-TYPE" "DEL PEAK 23(10P14) WILD-TYPE" 
                  TCGA-CG-5724                   TCGA-CG-5725 
"DEL PEAK 23(10P14) WILD-TYPE" "DEL PEAK 23(10P14) WILD-TYPE" 
                  TCGA-CG-5726                   TCGA-CG-5727 
"DEL PEAK 23(10P14) WILD-TYPE" "DEL PEAK 23(10P14) WILD-TYPE" 
                  TCGA-CG-5728                   TCGA-CG-5730 
"DEL PEAK 23(10P14) WILD-TYPE" "DEL PEAK 23(10P14) WILD-TYPE" 
                  TCGA-CG-5732                   TCGA-CG-5733 
  "DEL PEAK 23(10P14) MUTATED" "DEL PEAK 23(10P14) WILD-TYPE" 
                  TCGA-CG-5734                   TCGA-D7-5577 
"DEL PEAK 23(10P14) WILD-TYPE" "DEL PEAK 23(10P14) WILD-TYPE" 
                  TCGA-D7-5578                   TCGA-D7-5579 
"DEL PEAK 23(10P14) WILD-TYPE" "DEL PEAK 23(10P14) WILD-TYPE" 
                  TCGA-D7-6518                   TCGA-D7-6519 
"DEL PEAK 23(10P14) WILD-TYPE" "DEL PEAK 23(10P14) WILD-TYPE" 
                  TCGA-D7-6520                   TCGA-D7-6521 
"DEL PEAK 23(10P14) WILD-TYPE"   "DEL PEAK 23(10P14) MUTATED" 
                  TCGA-D7-6522                   TCGA-D7-6524 
"DEL PEAK 23(10P14) WILD-TYPE" "DEL PEAK 23(10P14) WILD-TYPE" 
                  TCGA-D7-6525                   TCGA-D7-6526 
"DEL PEAK 23(10P14) WILD-TYPE" "DEL PEAK 23(10P14) WILD-TYPE" 
                  TCGA-D7-6527                   TCGA-D7-6528 
"DEL PEAK 23(10P14) WILD-TYPE"   "DEL PEAK 23(10P14) MUTATED" 
                  TCGA-D7-6815                   TCGA-D7-6817 
  "DEL PEAK 23(10P14) MUTATED" "DEL PEAK 23(10P14) WILD-TYPE" 
                  TCGA-D7-6818                   TCGA-D7-6820 
"DEL PEAK 23(10P14) WILD-TYPE"   "DEL PEAK 23(10P14) MUTATED" 
                  TCGA-D7-6822                   TCGA-EQ-5647 
"DEL PEAK 23(10P14) WILD-TYPE" "DEL PEAK 23(10P14) WILD-TYPE" 
                  TCGA-EQ-8122                   TCGA-F1-6177 
"DEL PEAK 23(10P14) WILD-TYPE" "DEL PEAK 23(10P14) WILD-TYPE" 
                  TCGA-F1-6874                   TCGA-F1-6875 
"DEL PEAK 23(10P14) WILD-TYPE" "DEL PEAK 23(10P14) WILD-TYPE" 
                  TCGA-FP-7735                   TCGA-FP-7829 
"DEL PEAK 23(10P14) WILD-TYPE"   "DEL PEAK 23(10P14) MUTATED" 
                  TCGA-FP-7916                   TCGA-FP-7998 
"DEL PEAK 23(10P14) WILD-TYPE" "DEL PEAK 23(10P14) WILD-TYPE" 
                  TCGA-HJ-7597                   TCGA-IN-7806 
"DEL PEAK 23(10P14) WILD-TYPE" "DEL PEAK 23(10P14) WILD-TYPE" 
                  TCGA-IN-7808                   TCGA-IP-7968 
"DEL PEAK 23(10P14) WILD-TYPE" "DEL PEAK 23(10P14) WILD-TYPE" 
                  TCGA-B7-5816                   TCGA-B7-5818 
"DEL PEAK 23(10P14) WILD-TYPE" "DEL PEAK 23(10P14) WILD-TYPE" 
                  TCGA-BR-6452                   TCGA-BR-6455 
"DEL PEAK 23(10P14) WILD-TYPE" "DEL PEAK 23(10P14) WILD-TYPE" 
                  TCGA-BR-6457                   TCGA-BR-6458 
"DEL PEAK 23(10P14) WILD-TYPE"   "DEL PEAK 23(10P14) MUTATED" 
                  TCGA-BR-6563                   TCGA-BR-6564 
"DEL PEAK 23(10P14) WILD-TYPE"   "DEL PEAK 23(10P14) MUTATED" 
                  TCGA-BR-6565                   TCGA-BR-6566 
"DEL PEAK 23(10P14) WILD-TYPE" "DEL PEAK 23(10P14) WILD-TYPE" 
                  TCGA-BR-6705                   TCGA-BR-6706 
"DEL PEAK 23(10P14) WILD-TYPE" "DEL PEAK 23(10P14) WILD-TYPE" 
                  TCGA-BR-6707                   TCGA-BR-6709 
"DEL PEAK 23(10P14) WILD-TYPE" "DEL PEAK 23(10P14) WILD-TYPE" 
                  TCGA-BR-6710                   TCGA-BR-6801 
"DEL PEAK 23(10P14) WILD-TYPE" "DEL PEAK 23(10P14) WILD-TYPE" 
                  TCGA-BR-6802                   TCGA-BR-6803 
"DEL PEAK 23(10P14) WILD-TYPE" "DEL PEAK 23(10P14) WILD-TYPE" 
                  TCGA-BR-6852                   TCGA-BR-7196 
"DEL PEAK 23(10P14) WILD-TYPE" "DEL PEAK 23(10P14) WILD-TYPE" 
                  TCGA-BR-7197                   TCGA-BR-7703 
"DEL PEAK 23(10P14) WILD-TYPE" "DEL PEAK 23(10P14) WILD-TYPE" 
                  TCGA-BR-7704                   TCGA-BR-7707 
"DEL PEAK 23(10P14) WILD-TYPE" "DEL PEAK 23(10P14) WILD-TYPE" 
                  TCGA-BR-7715                   TCGA-BR-7716 
"DEL PEAK 23(10P14) WILD-TYPE" "DEL PEAK 23(10P14) WILD-TYPE" 
                  TCGA-BR-7717                   TCGA-BR-7722 
"DEL PEAK 23(10P14) WILD-TYPE" "DEL PEAK 23(10P14) WILD-TYPE" 
                  TCGA-BR-7723                   TCGA-BR-7851 
"DEL PEAK 23(10P14) WILD-TYPE" "DEL PEAK 23(10P14) WILD-TYPE" 
                  TCGA-BR-7901                   TCGA-BR-7957 
  "DEL PEAK 23(10P14) MUTATED" "DEL PEAK 23(10P14) WILD-TYPE" 
                  TCGA-BR-7958                   TCGA-BR-7959 
"DEL PEAK 23(10P14) WILD-TYPE" "DEL PEAK 23(10P14) WILD-TYPE" 
                  TCGA-BR-8059                   TCGA-BR-8060 
"DEL PEAK 23(10P14) WILD-TYPE" "DEL PEAK 23(10P14) WILD-TYPE" 
                  TCGA-BR-8077                   TCGA-BR-8078 
"DEL PEAK 23(10P14) WILD-TYPE" "DEL PEAK 23(10P14) WILD-TYPE" 
                  TCGA-BR-8080                   TCGA-BR-8081 
"DEL PEAK 23(10P14) WILD-TYPE" "DEL PEAK 23(10P14) WILD-TYPE" 
                  TCGA-BR-8284                   TCGA-BR-8285 
"DEL PEAK 23(10P14) WILD-TYPE" "DEL PEAK 23(10P14) WILD-TYPE" 
                  TCGA-BR-8286                   TCGA-BR-8289 
"DEL PEAK 23(10P14) WILD-TYPE" "DEL PEAK 23(10P14) WILD-TYPE" 
                  TCGA-BR-8291                   TCGA-BR-8295 
"DEL PEAK 23(10P14) WILD-TYPE" "DEL PEAK 23(10P14) WILD-TYPE" 
                  TCGA-BR-8296                   TCGA-BR-8297 
"DEL PEAK 23(10P14) WILD-TYPE" "DEL PEAK 23(10P14) WILD-TYPE" 
                  TCGA-CD-5798                   TCGA-CD-5799 
"DEL PEAK 23(10P14) WILD-TYPE"   "DEL PEAK 23(10P14) MUTATED" 
                  TCGA-CD-5800                   TCGA-CD-5801 
"DEL PEAK 23(10P14) WILD-TYPE" "DEL PEAK 23(10P14) WILD-TYPE" 
                  TCGA-CD-5802                   TCGA-CD-5803 
"DEL PEAK 23(10P14) WILD-TYPE" "DEL PEAK 23(10P14) WILD-TYPE" 
                  TCGA-CG-4300                   TCGA-CG-4301 
"DEL PEAK 23(10P14) WILD-TYPE"   "DEL PEAK 23(10P14) MUTATED" 
                  TCGA-CG-4304                   TCGA-CG-4305 
  "DEL PEAK 23(10P14) MUTATED" "DEL PEAK 23(10P14) WILD-TYPE" 
                  TCGA-CG-4306                   TCGA-CG-4436 
"DEL PEAK 23(10P14) WILD-TYPE" "DEL PEAK 23(10P14) WILD-TYPE" 
                  TCGA-CG-4437                   TCGA-CG-4438 
"DEL PEAK 23(10P14) WILD-TYPE" "DEL PEAK 23(10P14) WILD-TYPE" 
                  TCGA-CG-4440                   TCGA-CG-4441 
"DEL PEAK 23(10P14) WILD-TYPE" "DEL PEAK 23(10P14) WILD-TYPE" 
                  TCGA-CG-4443                   TCGA-CG-4444 
"DEL PEAK 23(10P14) WILD-TYPE" "DEL PEAK 23(10P14) WILD-TYPE" 
                  TCGA-CG-4449                   TCGA-CG-4455 
"DEL PEAK 23(10P14) WILD-TYPE"   "DEL PEAK 23(10P14) MUTATED" 
                  TCGA-CG-4460                   TCGA-CG-4462 
"DEL PEAK 23(10P14) WILD-TYPE" "DEL PEAK 23(10P14) WILD-TYPE" 
                  TCGA-CG-4465                   TCGA-CG-4466 
"DEL PEAK 23(10P14) WILD-TYPE" "DEL PEAK 23(10P14) WILD-TYPE" 
                  TCGA-CG-4469                   TCGA-CG-4472 
"DEL PEAK 23(10P14) WILD-TYPE" "DEL PEAK 23(10P14) WILD-TYPE" 
                  TCGA-CG-4474                   TCGA-CG-4477 
"DEL PEAK 23(10P14) WILD-TYPE" "DEL PEAK 23(10P14) WILD-TYPE" 
                  TCGA-CG-5716                   TCGA-CG-5717 
"DEL PEAK 23(10P14) WILD-TYPE" "DEL PEAK 23(10P14) WILD-TYPE" 
                  TCGA-CG-5718                   TCGA-CG-5719 
"DEL PEAK 23(10P14) WILD-TYPE" "DEL PEAK 23(10P14) WILD-TYPE" 
                  TCGA-CG-5720                   TCGA-CG-5721 
"DEL PEAK 23(10P14) WILD-TYPE" "DEL PEAK 23(10P14) WILD-TYPE" 
                  TCGA-CG-5722                   TCGA-CG-5723 
"DEL PEAK 23(10P14) WILD-TYPE" "DEL PEAK 23(10P14) WILD-TYPE" 
                  TCGA-CG-5724                   TCGA-CG-5725 
"DEL PEAK 23(10P14) WILD-TYPE" "DEL PEAK 23(10P14) WILD-TYPE" 
                  TCGA-CG-5726                   TCGA-CG-5727 
"DEL PEAK 23(10P14) WILD-TYPE" "DEL PEAK 23(10P14) WILD-TYPE" 
                  TCGA-CG-5728                   TCGA-CG-5730 
"DEL PEAK 23(10P14) WILD-TYPE" "DEL PEAK 23(10P14) WILD-TYPE" 
                  TCGA-CG-5732                   TCGA-CG-5733 
  "DEL PEAK 23(10P14) MUTATED" "DEL PEAK 23(10P14) WILD-TYPE" 
                  TCGA-CG-5734                   TCGA-D7-5577 
"DEL PEAK 23(10P14) WILD-TYPE" "DEL PEAK 23(10P14) WILD-TYPE" 
                  TCGA-D7-5578                   TCGA-D7-5579 
"DEL PEAK 23(10P14) WILD-TYPE" "DEL PEAK 23(10P14) WILD-TYPE" 
                  TCGA-D7-6518                   TCGA-D7-6519 
"DEL PEAK 23(10P14) WILD-TYPE" "DEL PEAK 23(10P14) WILD-TYPE" 
                  TCGA-D7-6520                   TCGA-D7-6521 
"DEL PEAK 23(10P14) WILD-TYPE"   "DEL PEAK 23(10P14) MUTATED" 
                  TCGA-D7-6522                   TCGA-D7-6524 
"DEL PEAK 23(10P14) WILD-TYPE" "DEL PEAK 23(10P14) WILD-TYPE" 
                  TCGA-D7-6525                   TCGA-D7-6526 
"DEL PEAK 23(10P14) WILD-TYPE" "DEL PEAK 23(10P14) WILD-TYPE" 
                  TCGA-D7-6527                   TCGA-D7-6528 
"DEL PEAK 23(10P14) WILD-TYPE"   "DEL PEAK 23(10P14) MUTATED" 
                  TCGA-D7-6815                   TCGA-D7-6817 
  "DEL PEAK 23(10P14) MUTATED" "DEL PEAK 23(10P14) WILD-TYPE" 
                  TCGA-D7-6818                   TCGA-D7-6820 
"DEL PEAK 23(10P14) WILD-TYPE"   "DEL PEAK 23(10P14) MUTATED" 
                  TCGA-D7-6822                   TCGA-EQ-5647 
"DEL PEAK 23(10P14) WILD-TYPE" "DEL PEAK 23(10P14) WILD-TYPE" 
                  TCGA-EQ-8122                   TCGA-F1-6177 
"DEL PEAK 23(10P14) WILD-TYPE" "DEL PEAK 23(10P14) WILD-TYPE" 
                  TCGA-F1-6874                   TCGA-F1-6875 
"DEL PEAK 23(10P14) WILD-TYPE" "DEL PEAK 23(10P14) WILD-TYPE" 
                  TCGA-FP-7735                   TCGA-FP-7829 
"DEL PEAK 23(10P14) WILD-TYPE"   "DEL PEAK 23(10P14) MUTATED" 
                  TCGA-FP-7916                   TCGA-FP-7998 
"DEL PEAK 23(10P14) WILD-TYPE" "DEL PEAK 23(10P14) WILD-TYPE" 
                  TCGA-HJ-7597                   TCGA-IN-7806 
"DEL PEAK 23(10P14) WILD-TYPE" "DEL PEAK 23(10P14) WILD-TYPE" 
                  TCGA-IN-7808                   TCGA-IP-7968 
"DEL PEAK 23(10P14) WILD-TYPE" "DEL PEAK 23(10P14) WILD-TYPE" 
                  TCGA-B7-5816                   TCGA-B7-5818 
"DEL PEAK 23(10P14) WILD-TYPE" "DEL PEAK 23(10P14) WILD-TYPE" 
                  TCGA-BR-6452                   TCGA-BR-6455 
"DEL PEAK 23(10P14) WILD-TYPE" "DEL PEAK 23(10P14) WILD-TYPE" 
                  TCGA-BR-6457                   TCGA-BR-6458 
"DEL PEAK 23(10P14) WILD-TYPE"   "DEL PEAK 23(10P14) MUTATED" 
                  TCGA-BR-6563                   TCGA-BR-6564 
"DEL PEAK 23(10P14) WILD-TYPE"   "DEL PEAK 23(10P14) MUTATED" 
                  TCGA-BR-6565                   TCGA-BR-6566 
"DEL PEAK 23(10P14) WILD-TYPE" "DEL PEAK 23(10P14) WILD-TYPE" 
                  TCGA-BR-6705                   TCGA-BR-6706 
"DEL PEAK 23(10P14) WILD-TYPE" "DEL PEAK 23(10P14) WILD-TYPE" 
                  TCGA-BR-6707                   TCGA-BR-6709 
"DEL PEAK 23(10P14) WILD-TYPE" "DEL PEAK 23(10P14) WILD-TYPE" 
                  TCGA-BR-6710                   TCGA-BR-6801 
"DEL PEAK 23(10P14) WILD-TYPE" "DEL PEAK 23(10P14) WILD-TYPE" 
                  TCGA-BR-6802                   TCGA-BR-6803 
"DEL PEAK 23(10P14) WILD-TYPE" "DEL PEAK 23(10P14) WILD-TYPE" 
                  TCGA-BR-6852                   TCGA-BR-7196 
"DEL PEAK 23(10P14) WILD-TYPE" "DEL PEAK 23(10P14) WILD-TYPE" 
                  TCGA-BR-7197                   TCGA-BR-7703 
"DEL PEAK 23(10P14) WILD-TYPE" "DEL PEAK 23(10P14) WILD-TYPE" 
                  TCGA-BR-7704                   TCGA-BR-7707 
"DEL PEAK 23(10P14) WILD-TYPE" "DEL PEAK 23(10P14) WILD-TYPE" 
                  TCGA-BR-7715                   TCGA-BR-7716 
"DEL PEAK 23(10P14) WILD-TYPE" "DEL PEAK 23(10P14) WILD-TYPE" 
                  TCGA-BR-7717                   TCGA-BR-7722 
"DEL PEAK 23(10P14) WILD-TYPE" "DEL PEAK 23(10P14) WILD-TYPE" 
                  TCGA-BR-7723                   TCGA-BR-7851 
"DEL PEAK 23(10P14) WILD-TYPE" "DEL PEAK 23(10P14) WILD-TYPE" 
                  TCGA-BR-7901                   TCGA-BR-7957 
  "DEL PEAK 23(10P14) MUTATED" "DEL PEAK 23(10P14) WILD-TYPE" 
                  TCGA-BR-7958                   TCGA-BR-7959 
"DEL PEAK 23(10P14) WILD-TYPE" "DEL PEAK 23(10P14) WILD-TYPE" 
                  TCGA-BR-8059                   TCGA-BR-8060 
"DEL PEAK 23(10P14) WILD-TYPE" "DEL PEAK 23(10P14) WILD-TYPE" 
                  TCGA-BR-8077                   TCGA-BR-8078 
"DEL PEAK 23(10P14) WILD-TYPE" "DEL PEAK 23(10P14) WILD-TYPE" 
                  TCGA-BR-8080                   TCGA-BR-8081 
"DEL PEAK 23(10P14) WILD-TYPE" "DEL PEAK 23(10P14) WILD-TYPE" 
                  TCGA-BR-8284                   TCGA-BR-8285 
"DEL PEAK 23(10P14) WILD-TYPE" "DEL PEAK 23(10P14) WILD-TYPE" 
                  TCGA-BR-8286                   TCGA-BR-8289 
"DEL PEAK 23(10P14) WILD-TYPE" "DEL PEAK 23(10P14) WILD-TYPE" 
                  TCGA-BR-8291                   TCGA-BR-8295 
"DEL PEAK 23(10P14) WILD-TYPE" "DEL PEAK 23(10P14) WILD-TYPE" 
                  TCGA-BR-8296                   TCGA-BR-8297 
"DEL PEAK 23(10P14) WILD-TYPE" "DEL PEAK 23(10P14) WILD-TYPE" 
                  TCGA-CD-5798                   TCGA-CD-5799 
"DEL PEAK 23(10P14) WILD-TYPE"   "DEL PEAK 23(10P14) MUTATED" 
                  TCGA-CD-5800                   TCGA-CD-5801 
"DEL PEAK 23(10P14) WILD-TYPE" "DEL PEAK 23(10P14) WILD-TYPE" 
                  TCGA-CD-5802                   TCGA-CD-5803 
"DEL PEAK 23(10P14) WILD-TYPE" "DEL PEAK 23(10P14) WILD-TYPE" 
                  TCGA-CG-4300                   TCGA-CG-4301 
"DEL PEAK 23(10P14) WILD-TYPE"   "DEL PEAK 23(10P14) MUTATED" 
                  TCGA-CG-4304                   TCGA-CG-4305 
  "DEL PEAK 23(10P14) MUTATED" "DEL PEAK 23(10P14) WILD-TYPE" 
                  TCGA-CG-4306                   TCGA-CG-4436 
"DEL PEAK 23(10P14) WILD-TYPE" "DEL PEAK 23(10P14) WILD-TYPE" 
                  TCGA-CG-4437                   TCGA-CG-4438 
"DEL PEAK 23(10P14) WILD-TYPE" "DEL PEAK 23(10P14) WILD-TYPE" 
                  TCGA-CG-4440                   TCGA-CG-4441 
"DEL PEAK 23(10P14) WILD-TYPE" "DEL PEAK 23(10P14) WILD-TYPE" 
                  TCGA-CG-4443                   TCGA-CG-4444 
"DEL PEAK 23(10P14) WILD-TYPE" "DEL PEAK 23(10P14) WILD-TYPE" 
                  TCGA-CG-4449                   TCGA-CG-4455 
"DEL PEAK 23(10P14) WILD-TYPE"   "DEL PEAK 23(10P14) MUTATED" 
                  TCGA-CG-4460                   TCGA-CG-4462 
"DEL PEAK 23(10P14) WILD-TYPE" "DEL PEAK 23(10P14) WILD-TYPE" 
                  TCGA-CG-4465                   TCGA-CG-4466 
"DEL PEAK 23(10P14) WILD-TYPE" "DEL PEAK 23(10P14) WILD-TYPE" 
                  TCGA-CG-4469                   TCGA-CG-4472 
"DEL PEAK 23(10P14) WILD-TYPE" "DEL PEAK 23(10P14) WILD-TYPE" 
                  TCGA-CG-4474                   TCGA-CG-4477 
"DEL PEAK 23(10P14) WILD-TYPE" "DEL PEAK 23(10P14) WILD-TYPE" 
                  TCGA-CG-5716                   TCGA-CG-5717 
"DEL PEAK 23(10P14) WILD-TYPE" "DEL PEAK 23(10P14) WILD-TYPE" 
                  TCGA-CG-5718                   TCGA-CG-5719 
"DEL PEAK 23(10P14) WILD-TYPE" "DEL PEAK 23(10P14) WILD-TYPE" 
                  TCGA-CG-5720                   TCGA-CG-5721 
"DEL PEAK 23(10P14) WILD-TYPE" "DEL PEAK 23(10P14) WILD-TYPE" 
                  TCGA-CG-5722                   TCGA-CG-5723 
"DEL PEAK 23(10P14) WILD-TYPE" "DEL PEAK 23(10P14) WILD-TYPE" 
                  TCGA-CG-5724                   TCGA-CG-5725 
"DEL PEAK 23(10P14) WILD-TYPE" "DEL PEAK 23(10P14) WILD-TYPE" 
                  TCGA-CG-5726                   TCGA-CG-5727 
"DEL PEAK 23(10P14) WILD-TYPE" "DEL PEAK 23(10P14) WILD-TYPE" 
                  TCGA-CG-5728                   TCGA-CG-5730 
"DEL PEAK 23(10P14) WILD-TYPE" "DEL PEAK 23(10P14) WILD-TYPE" 
                  TCGA-CG-5732                   TCGA-CG-5733 
  "DEL PEAK 23(10P14) MUTATED" "DEL PEAK 23(10P14) WILD-TYPE" 
                  TCGA-CG-5734                   TCGA-D7-5577 
"DEL PEAK 23(10P14) WILD-TYPE" "DEL PEAK 23(10P14) WILD-TYPE" 
                  TCGA-D7-5578                   TCGA-D7-5579 
"DEL PEAK 23(10P14) WILD-TYPE" "DEL PEAK 23(10P14) WILD-TYPE" 
                  TCGA-D7-6518                   TCGA-D7-6519 
"DEL PEAK 23(10P14) WILD-TYPE" "DEL PEAK 23(10P14) WILD-TYPE" 
                  TCGA-D7-6520                   TCGA-D7-6521 
"DEL PEAK 23(10P14) WILD-TYPE"   "DEL PEAK 23(10P14) MUTATED" 
                  TCGA-D7-6522                   TCGA-D7-6524 
"DEL PEAK 23(10P14) WILD-TYPE" "DEL PEAK 23(10P14) WILD-TYPE" 
                  TCGA-D7-6525                   TCGA-D7-6526 
"DEL PEAK 23(10P14) WILD-TYPE" "DEL PEAK 23(10P14) WILD-TYPE" 
                  TCGA-D7-6527                   TCGA-D7-6528 
"DEL PEAK 23(10P14) WILD-TYPE"   "DEL PEAK 23(10P14) MUTATED" 
                  TCGA-D7-6815                   TCGA-D7-6817 
  "DEL PEAK 23(10P14) MUTATED" "DEL PEAK 23(10P14) WILD-TYPE" 
                  TCGA-D7-6818                   TCGA-D7-6820 
"DEL PEAK 23(10P14) WILD-TYPE"   "DEL PEAK 23(10P14) MUTATED" 
                  TCGA-D7-6822                   TCGA-EQ-5647 
"DEL PEAK 23(10P14) WILD-TYPE" "DEL PEAK 23(10P14) WILD-TYPE" 
                  TCGA-EQ-8122                   TCGA-F1-6177 
"DEL PEAK 23(10P14) WILD-TYPE" "DEL PEAK 23(10P14) WILD-TYPE" 
                  TCGA-F1-6874                   TCGA-F1-6875 
"DEL PEAK 23(10P14) WILD-TYPE" "DEL PEAK 23(10P14) WILD-TYPE" 
                  TCGA-FP-7735                   TCGA-FP-7829 
"DEL PEAK 23(10P14) WILD-TYPE"   "DEL PEAK 23(10P14) MUTATED" 
                  TCGA-FP-7916                   TCGA-FP-7998 
"DEL PEAK 23(10P14) WILD-TYPE" "DEL PEAK 23(10P14) WILD-TYPE" 
                  TCGA-HJ-7597                   TCGA-IN-7806 
"DEL PEAK 23(10P14) WILD-TYPE" "DEL PEAK 23(10P14) WILD-TYPE" 
                  TCGA-IN-7808                   TCGA-IP-7968 
"DEL PEAK 23(10P14) WILD-TYPE" "DEL PEAK 23(10P14) WILD-TYPE" 
[1] "hr="     "8.1e+07"
D49V2, continuous
D49V3, binary
[1] "tbl2"
                              cls
clus                           [,1] [,2]
  DEL PEAK 23(10P14) MUTATED      8   13
  DEL PEAK 23(10P14) WILD-TYPE   57   83
        clus
vv       DEL PEAK 23(10P14) MUTATED DEL PEAK 23(10P14) WILD-TYPE
  FEMALE                          8                           57
  MALE                           13                           83
D49V4, multiclass
D49V5, multiclass
    clus
vv   DEL PEAK 23(10P14) MUTATED DEL PEAK 23(10P14) WILD-TYPE
  T1                          0                            6
  T2                         10                           43
  T3                          6                           53
  T4                          1                           32
D49V6, multiclass
    clus
vv   DEL PEAK 23(10P14) MUTATED DEL PEAK 23(10P14) WILD-TYPE
  N0                          3                           47
  N1                         11                           46
  N2                          2                           22
  N3                          2                           17
D49V7, multiclass
    clus
vv   DEL PEAK 23(10P14) MUTATED DEL PEAK 23(10P14) WILD-TYPE
  M0                         20                          112
  M1                          1                           17
  MX                          0                           11
D49V8, multiclass
     clus
vv    DEL PEAK 23(10P14) MUTATED DEL PEAK 23(10P14) WILD-TYPE
  I                            3                           22
  II                           5                           38
  III                          6                           42
  IV                           3                           26
D49V9, binary
[1] "tbl2"
                              cls
clus                           [,1] [,2]
  DEL PEAK 23(10P14) MUTATED     20    1
  DEL PEAK 23(10P14) WILD-TYPE  136    4
     clus
vv    DEL PEAK 23(10P14) MUTATED DEL PEAK 23(10P14) WILD-TYPE
  NO                           1                            4
  YES                         20                          136

Clustering(50) Variable = Del Peak 24(10q22.3) mutation analysis
D50V1, survival
                    TCGA-B7-5816                     TCGA-B7-5818 
"DEL PEAK 24(10Q22.3) WILD-TYPE" "DEL PEAK 24(10Q22.3) WILD-TYPE" 
                    TCGA-BR-6452                     TCGA-BR-6455 
"DEL PEAK 24(10Q22.3) WILD-TYPE" "DEL PEAK 24(10Q22.3) WILD-TYPE" 
                    TCGA-BR-6457                     TCGA-BR-6458 
"DEL PEAK 24(10Q22.3) WILD-TYPE" "DEL PEAK 24(10Q22.3) WILD-TYPE" 
                    TCGA-BR-6563                     TCGA-BR-6564 
"DEL PEAK 24(10Q22.3) WILD-TYPE" "DEL PEAK 24(10Q22.3) WILD-TYPE" 
                    TCGA-BR-6565                     TCGA-BR-6566 
"DEL PEAK 24(10Q22.3) WILD-TYPE" "DEL PEAK 24(10Q22.3) WILD-TYPE" 
                    TCGA-BR-6705                     TCGA-BR-6706 
"DEL PEAK 24(10Q22.3) WILD-TYPE" "DEL PEAK 24(10Q22.3) WILD-TYPE" 
                    TCGA-BR-6707                     TCGA-BR-6709 
"DEL PEAK 24(10Q22.3) WILD-TYPE" "DEL PEAK 24(10Q22.3) WILD-TYPE" 
                    TCGA-BR-6710                     TCGA-BR-6801 
"DEL PEAK 24(10Q22.3) WILD-TYPE" "DEL PEAK 24(10Q22.3) WILD-TYPE" 
                    TCGA-BR-6802                     TCGA-BR-6803 
"DEL PEAK 24(10Q22.3) WILD-TYPE" "DEL PEAK 24(10Q22.3) WILD-TYPE" 
                    TCGA-BR-6852                     TCGA-BR-7196 
"DEL PEAK 24(10Q22.3) WILD-TYPE" "DEL PEAK 24(10Q22.3) WILD-TYPE" 
                    TCGA-BR-7197                     TCGA-BR-7703 
"DEL PEAK 24(10Q22.3) WILD-TYPE" "DEL PEAK 24(10Q22.3) WILD-TYPE" 
                    TCGA-BR-7704                     TCGA-BR-7707 
"DEL PEAK 24(10Q22.3) WILD-TYPE" "DEL PEAK 24(10Q22.3) WILD-TYPE" 
                    TCGA-BR-7715                     TCGA-BR-7716 
"DEL PEAK 24(10Q22.3) WILD-TYPE"   "DEL PEAK 24(10Q22.3) MUTATED" 
                    TCGA-BR-7717                     TCGA-BR-7722 
"DEL PEAK 24(10Q22.3) WILD-TYPE" "DEL PEAK 24(10Q22.3) WILD-TYPE" 
                    TCGA-BR-7723                     TCGA-BR-7851 
  "DEL PEAK 24(10Q22.3) MUTATED" "DEL PEAK 24(10Q22.3) WILD-TYPE" 
                    TCGA-BR-7901                     TCGA-BR-7957 
  "DEL PEAK 24(10Q22.3) MUTATED" "DEL PEAK 24(10Q22.3) WILD-TYPE" 
                    TCGA-BR-7958                     TCGA-BR-7959 
"DEL PEAK 24(10Q22.3) WILD-TYPE" "DEL PEAK 24(10Q22.3) WILD-TYPE" 
                    TCGA-BR-8059                     TCGA-BR-8060 
"DEL PEAK 24(10Q22.3) WILD-TYPE" "DEL PEAK 24(10Q22.3) WILD-TYPE" 
                    TCGA-BR-8077                     TCGA-BR-8078 
"DEL PEAK 24(10Q22.3) WILD-TYPE" "DEL PEAK 24(10Q22.3) WILD-TYPE" 
                    TCGA-BR-8080                     TCGA-BR-8081 
"DEL PEAK 24(10Q22.3) WILD-TYPE" "DEL PEAK 24(10Q22.3) WILD-TYPE" 
                    TCGA-BR-8284                     TCGA-BR-8285 
"DEL PEAK 24(10Q22.3) WILD-TYPE" "DEL PEAK 24(10Q22.3) WILD-TYPE" 
                    TCGA-BR-8286                     TCGA-BR-8289 
"DEL PEAK 24(10Q22.3) WILD-TYPE" "DEL PEAK 24(10Q22.3) WILD-TYPE" 
                    TCGA-BR-8291                     TCGA-BR-8295 
"DEL PEAK 24(10Q22.3) WILD-TYPE" "DEL PEAK 24(10Q22.3) WILD-TYPE" 
                    TCGA-BR-8296                     TCGA-BR-8297 
"DEL PEAK 24(10Q22.3) WILD-TYPE" "DEL PEAK 24(10Q22.3) WILD-TYPE" 
                    TCGA-CD-5798                     TCGA-CD-5799 
"DEL PEAK 24(10Q22.3) WILD-TYPE"   "DEL PEAK 24(10Q22.3) MUTATED" 
                    TCGA-CD-5800                     TCGA-CD-5801 
"DEL PEAK 24(10Q22.3) WILD-TYPE" "DEL PEAK 24(10Q22.3) WILD-TYPE" 
                    TCGA-CD-5802                     TCGA-CD-5803 
  "DEL PEAK 24(10Q22.3) MUTATED" "DEL PEAK 24(10Q22.3) WILD-TYPE" 
                    TCGA-CG-4300                     TCGA-CG-4301 
"DEL PEAK 24(10Q22.3) WILD-TYPE" "DEL PEAK 24(10Q22.3) WILD-TYPE" 
                    TCGA-CG-4304                     TCGA-CG-4305 
"DEL PEAK 24(10Q22.3) WILD-TYPE" "DEL PEAK 24(10Q22.3) WILD-TYPE" 
                    TCGA-CG-4306                     TCGA-CG-4436 
"DEL PEAK 24(10Q22.3) WILD-TYPE"   "DEL PEAK 24(10Q22.3) MUTATED" 
                    TCGA-CG-4437                     TCGA-CG-4438 
"DEL PEAK 24(10Q22.3) WILD-TYPE" "DEL PEAK 24(10Q22.3) WILD-TYPE" 
                    TCGA-CG-4440                     TCGA-CG-4441 
  "DEL PEAK 24(10Q22.3) MUTATED"   "DEL PEAK 24(10Q22.3) MUTATED" 
                    TCGA-CG-4443                     TCGA-CG-4444 
"DEL PEAK 24(10Q22.3) WILD-TYPE" "DEL PEAK 24(10Q22.3) WILD-TYPE" 
                    TCGA-CG-4449                     TCGA-CG-4455 
"DEL PEAK 24(10Q22.3) WILD-TYPE"   "DEL PEAK 24(10Q22.3) MUTATED" 
                    TCGA-CG-4460                     TCGA-CG-4462 
"DEL PEAK 24(10Q22.3) WILD-TYPE" "DEL PEAK 24(10Q22.3) WILD-TYPE" 
                    TCGA-CG-4465                     TCGA-CG-4466 
"DEL PEAK 24(10Q22.3) WILD-TYPE"   "DEL PEAK 24(10Q22.3) MUTATED" 
                    TCGA-CG-4469                     TCGA-CG-4472 
"DEL PEAK 24(10Q22.3) WILD-TYPE" "DEL PEAK 24(10Q22.3) WILD-TYPE" 
                    TCGA-CG-4474                     TCGA-CG-4477 
"DEL PEAK 24(10Q22.3) WILD-TYPE" "DEL PEAK 24(10Q22.3) WILD-TYPE" 
                    TCGA-CG-5716                     TCGA-CG-5717 
"DEL PEAK 24(10Q22.3) WILD-TYPE" "DEL PEAK 24(10Q22.3) WILD-TYPE" 
                    TCGA-CG-5718                     TCGA-CG-5719 
  "DEL PEAK 24(10Q22.3) MUTATED" "DEL PEAK 24(10Q22.3) WILD-TYPE" 
                    TCGA-CG-5720                     TCGA-CG-5721 
"DEL PEAK 24(10Q22.3) WILD-TYPE" "DEL PEAK 24(10Q22.3) WILD-TYPE" 
                    TCGA-CG-5722                     TCGA-CG-5723 
"DEL PEAK 24(10Q22.3) WILD-TYPE" "DEL PEAK 24(10Q22.3) WILD-TYPE" 
                    TCGA-CG-5724                     TCGA-CG-5725 
"DEL PEAK 24(10Q22.3) WILD-TYPE" "DEL PEAK 24(10Q22.3) WILD-TYPE" 
                    TCGA-CG-5726                     TCGA-CG-5727 
"DEL PEAK 24(10Q22.3) WILD-TYPE" "DEL PEAK 24(10Q22.3) WILD-TYPE" 
                    TCGA-CG-5728                     TCGA-CG-5730 
"DEL PEAK 24(10Q22.3) WILD-TYPE"   "DEL PEAK 24(10Q22.3) MUTATED" 
                    TCGA-CG-5732                     TCGA-CG-5733 
"DEL PEAK 24(10Q22.3) WILD-TYPE" "DEL PEAK 24(10Q22.3) WILD-TYPE" 
                    TCGA-CG-5734                     TCGA-D7-5577 
"DEL PEAK 24(10Q22.3) WILD-TYPE" "DEL PEAK 24(10Q22.3) WILD-TYPE" 
                    TCGA-D7-5578                     TCGA-D7-5579 
"DEL PEAK 24(10Q22.3) WILD-TYPE" "DEL PEAK 24(10Q22.3) WILD-TYPE" 
                    TCGA-D7-6518                     TCGA-D7-6519 
  "DEL PEAK 24(10Q22.3) MUTATED" "DEL PEAK 24(10Q22.3) WILD-TYPE" 
                    TCGA-D7-6520                     TCGA-D7-6521 
"DEL PEAK 24(10Q22.3) WILD-TYPE"   "DEL PEAK 24(10Q22.3) MUTATED" 
                    TCGA-D7-6522                     TCGA-D7-6524 
"DEL PEAK 24(10Q22.3) WILD-TYPE" "DEL PEAK 24(10Q22.3) WILD-TYPE" 
                    TCGA-D7-6525                     TCGA-D7-6526 
"DEL PEAK 24(10Q22.3) WILD-TYPE" "DEL PEAK 24(10Q22.3) WILD-TYPE" 
                    TCGA-D7-6527                     TCGA-D7-6528 
  "DEL PEAK 24(10Q22.3) MUTATED"   "DEL PEAK 24(10Q22.3) MUTATED" 
                    TCGA-D7-6815                     TCGA-D7-6817 
  "DEL PEAK 24(10Q22.3) MUTATED"   "DEL PEAK 24(10Q22.3) MUTATED" 
                    TCGA-D7-6818                     TCGA-D7-6820 
"DEL PEAK 24(10Q22.3) WILD-TYPE" "DEL PEAK 24(10Q22.3) WILD-TYPE" 
                    TCGA-D7-6822                     TCGA-EQ-5647 
"DEL PEAK 24(10Q22.3) WILD-TYPE" "DEL PEAK 24(10Q22.3) WILD-TYPE" 
                    TCGA-EQ-8122                     TCGA-F1-6177 
"DEL PEAK 24(10Q22.3) WILD-TYPE" "DEL PEAK 24(10Q22.3) WILD-TYPE" 
                    TCGA-F1-6874                     TCGA-F1-6875 
"DEL PEAK 24(10Q22.3) WILD-TYPE" "DEL PEAK 24(10Q22.3) WILD-TYPE" 
                    TCGA-FP-7735                     TCGA-FP-7829 
"DEL PEAK 24(10Q22.3) WILD-TYPE"   "DEL PEAK 24(10Q22.3) MUTATED" 
                    TCGA-FP-7916                     TCGA-FP-7998 
"DEL PEAK 24(10Q22.3) WILD-TYPE" "DEL PEAK 24(10Q22.3) WILD-TYPE" 
                    TCGA-HJ-7597                     TCGA-IN-7806 
"DEL PEAK 24(10Q22.3) WILD-TYPE" "DEL PEAK 24(10Q22.3) WILD-TYPE" 
                    TCGA-IN-7808                     TCGA-IP-7968 
"DEL PEAK 24(10Q22.3) WILD-TYPE" "DEL PEAK 24(10Q22.3) WILD-TYPE" 
                    TCGA-B7-5816                     TCGA-B7-5818 
"DEL PEAK 24(10Q22.3) WILD-TYPE" "DEL PEAK 24(10Q22.3) WILD-TYPE" 
                    TCGA-BR-6452                     TCGA-BR-6455 
"DEL PEAK 24(10Q22.3) WILD-TYPE" "DEL PEAK 24(10Q22.3) WILD-TYPE" 
                    TCGA-BR-6457                     TCGA-BR-6458 
"DEL PEAK 24(10Q22.3) WILD-TYPE" "DEL PEAK 24(10Q22.3) WILD-TYPE" 
                    TCGA-BR-6563                     TCGA-BR-6564 
"DEL PEAK 24(10Q22.3) WILD-TYPE" "DEL PEAK 24(10Q22.3) WILD-TYPE" 
                    TCGA-BR-6565                     TCGA-BR-6566 
"DEL PEAK 24(10Q22.3) WILD-TYPE" "DEL PEAK 24(10Q22.3) WILD-TYPE" 
                    TCGA-BR-6705                     TCGA-BR-6706 
"DEL PEAK 24(10Q22.3) WILD-TYPE" "DEL PEAK 24(10Q22.3) WILD-TYPE" 
                    TCGA-BR-6707                     TCGA-BR-6709 
"DEL PEAK 24(10Q22.3) WILD-TYPE" "DEL PEAK 24(10Q22.3) WILD-TYPE" 
                    TCGA-BR-6710                     TCGA-BR-6801 
"DEL PEAK 24(10Q22.3) WILD-TYPE" "DEL PEAK 24(10Q22.3) WILD-TYPE" 
                    TCGA-BR-6802                     TCGA-BR-6803 
"DEL PEAK 24(10Q22.3) WILD-TYPE" "DEL PEAK 24(10Q22.3) WILD-TYPE" 
                    TCGA-BR-6852                     TCGA-BR-7196 
"DEL PEAK 24(10Q22.3) WILD-TYPE" "DEL PEAK 24(10Q22.3) WILD-TYPE" 
                    TCGA-BR-7197                     TCGA-BR-7703 
"DEL PEAK 24(10Q22.3) WILD-TYPE" "DEL PEAK 24(10Q22.3) WILD-TYPE" 
                    TCGA-BR-7704                     TCGA-BR-7707 
"DEL PEAK 24(10Q22.3) WILD-TYPE" "DEL PEAK 24(10Q22.3) WILD-TYPE" 
                    TCGA-BR-7715                     TCGA-BR-7716 
"DEL PEAK 24(10Q22.3) WILD-TYPE"   "DEL PEAK 24(10Q22.3) MUTATED" 
                    TCGA-BR-7717                     TCGA-BR-7722 
"DEL PEAK 24(10Q22.3) WILD-TYPE" "DEL PEAK 24(10Q22.3) WILD-TYPE" 
                    TCGA-BR-7723                     TCGA-BR-7851 
  "DEL PEAK 24(10Q22.3) MUTATED" "DEL PEAK 24(10Q22.3) WILD-TYPE" 
                    TCGA-BR-7901                     TCGA-BR-7957 
  "DEL PEAK 24(10Q22.3) MUTATED" "DEL PEAK 24(10Q22.3) WILD-TYPE" 
                    TCGA-BR-7958                     TCGA-BR-7959 
"DEL PEAK 24(10Q22.3) WILD-TYPE" "DEL PEAK 24(10Q22.3) WILD-TYPE" 
                    TCGA-BR-8059                     TCGA-BR-8060 
"DEL PEAK 24(10Q22.3) WILD-TYPE" "DEL PEAK 24(10Q22.3) WILD-TYPE" 
                    TCGA-BR-8077                     TCGA-BR-8078 
"DEL PEAK 24(10Q22.3) WILD-TYPE" "DEL PEAK 24(10Q22.3) WILD-TYPE" 
                    TCGA-BR-8080                     TCGA-BR-8081 
"DEL PEAK 24(10Q22.3) WILD-TYPE" "DEL PEAK 24(10Q22.3) WILD-TYPE" 
                    TCGA-BR-8284                     TCGA-BR-8285 
"DEL PEAK 24(10Q22.3) WILD-TYPE" "DEL PEAK 24(10Q22.3) WILD-TYPE" 
                    TCGA-BR-8286                     TCGA-BR-8289 
"DEL PEAK 24(10Q22.3) WILD-TYPE" "DEL PEAK 24(10Q22.3) WILD-TYPE" 
                    TCGA-BR-8291                     TCGA-BR-8295 
"DEL PEAK 24(10Q22.3) WILD-TYPE" "DEL PEAK 24(10Q22.3) WILD-TYPE" 
                    TCGA-BR-8296                     TCGA-BR-8297 
"DEL PEAK 24(10Q22.3) WILD-TYPE" "DEL PEAK 24(10Q22.3) WILD-TYPE" 
                    TCGA-CD-5798                     TCGA-CD-5799 
"DEL PEAK 24(10Q22.3) WILD-TYPE"   "DEL PEAK 24(10Q22.3) MUTATED" 
                    TCGA-CD-5800                     TCGA-CD-5801 
"DEL PEAK 24(10Q22.3) WILD-TYPE" "DEL PEAK 24(10Q22.3) WILD-TYPE" 
                    TCGA-CD-5802                     TCGA-CD-5803 
  "DEL PEAK 24(10Q22.3) MUTATED" "DEL PEAK 24(10Q22.3) WILD-TYPE" 
                    TCGA-CG-4300                     TCGA-CG-4301 
"DEL PEAK 24(10Q22.3) WILD-TYPE" "DEL PEAK 24(10Q22.3) WILD-TYPE" 
                    TCGA-CG-4304                     TCGA-CG-4305 
"DEL PEAK 24(10Q22.3) WILD-TYPE" "DEL PEAK 24(10Q22.3) WILD-TYPE" 
                    TCGA-CG-4306                     TCGA-CG-4436 
"DEL PEAK 24(10Q22.3) WILD-TYPE"   "DEL PEAK 24(10Q22.3) MUTATED" 
                    TCGA-CG-4437                     TCGA-CG-4438 
"DEL PEAK 24(10Q22.3) WILD-TYPE" "DEL PEAK 24(10Q22.3) WILD-TYPE" 
                    TCGA-CG-4440                     TCGA-CG-4441 
  "DEL PEAK 24(10Q22.3) MUTATED"   "DEL PEAK 24(10Q22.3) MUTATED" 
                    TCGA-CG-4443                     TCGA-CG-4444 
"DEL PEAK 24(10Q22.3) WILD-TYPE" "DEL PEAK 24(10Q22.3) WILD-TYPE" 
                    TCGA-CG-4449                     TCGA-CG-4455 
"DEL PEAK 24(10Q22.3) WILD-TYPE"   "DEL PEAK 24(10Q22.3) MUTATED" 
                    TCGA-CG-4460                     TCGA-CG-4462 
"DEL PEAK 24(10Q22.3) WILD-TYPE" "DEL PEAK 24(10Q22.3) WILD-TYPE" 
                    TCGA-CG-4465                     TCGA-CG-4466 
"DEL PEAK 24(10Q22.3) WILD-TYPE"   "DEL PEAK 24(10Q22.3) MUTATED" 
                    TCGA-CG-4469                     TCGA-CG-4472 
"DEL PEAK 24(10Q22.3) WILD-TYPE" "DEL PEAK 24(10Q22.3) WILD-TYPE" 
                    TCGA-CG-4474                     TCGA-CG-4477 
"DEL PEAK 24(10Q22.3) WILD-TYPE" "DEL PEAK 24(10Q22.3) WILD-TYPE" 
                    TCGA-CG-5716                     TCGA-CG-5717 
"DEL PEAK 24(10Q22.3) WILD-TYPE" "DEL PEAK 24(10Q22.3) WILD-TYPE" 
                    TCGA-CG-5718                     TCGA-CG-5719 
  "DEL PEAK 24(10Q22.3) MUTATED" "DEL PEAK 24(10Q22.3) WILD-TYPE" 
                    TCGA-CG-5720                     TCGA-CG-5721 
"DEL PEAK 24(10Q22.3) WILD-TYPE" "DEL PEAK 24(10Q22.3) WILD-TYPE" 
                    TCGA-CG-5722                     TCGA-CG-5723 
"DEL PEAK 24(10Q22.3) WILD-TYPE" "DEL PEAK 24(10Q22.3) WILD-TYPE" 
                    TCGA-CG-5724                     TCGA-CG-5725 
"DEL PEAK 24(10Q22.3) WILD-TYPE" "DEL PEAK 24(10Q22.3) WILD-TYPE" 
                    TCGA-CG-5726                     TCGA-CG-5727 
"DEL PEAK 24(10Q22.3) WILD-TYPE" "DEL PEAK 24(10Q22.3) WILD-TYPE" 
                    TCGA-CG-5728                     TCGA-CG-5730 
"DEL PEAK 24(10Q22.3) WILD-TYPE"   "DEL PEAK 24(10Q22.3) MUTATED" 
                    TCGA-CG-5732                     TCGA-CG-5733 
"DEL PEAK 24(10Q22.3) WILD-TYPE" "DEL PEAK 24(10Q22.3) WILD-TYPE" 
                    TCGA-CG-5734                     TCGA-D7-5577 
"DEL PEAK 24(10Q22.3) WILD-TYPE" "DEL PEAK 24(10Q22.3) WILD-TYPE" 
                    TCGA-D7-5578                     TCGA-D7-5579 
"DEL PEAK 24(10Q22.3) WILD-TYPE" "DEL PEAK 24(10Q22.3) WILD-TYPE" 
                    TCGA-D7-6518                     TCGA-D7-6519 
  "DEL PEAK 24(10Q22.3) MUTATED" "DEL PEAK 24(10Q22.3) WILD-TYPE" 
                    TCGA-D7-6520                     TCGA-D7-6521 
"DEL PEAK 24(10Q22.3) WILD-TYPE"   "DEL PEAK 24(10Q22.3) MUTATED" 
                    TCGA-D7-6522                     TCGA-D7-6524 
"DEL PEAK 24(10Q22.3) WILD-TYPE" "DEL PEAK 24(10Q22.3) WILD-TYPE" 
                    TCGA-D7-6525                     TCGA-D7-6526 
"DEL PEAK 24(10Q22.3) WILD-TYPE" "DEL PEAK 24(10Q22.3) WILD-TYPE" 
                    TCGA-D7-6527                     TCGA-D7-6528 
  "DEL PEAK 24(10Q22.3) MUTATED"   "DEL PEAK 24(10Q22.3) MUTATED" 
                    TCGA-D7-6815                     TCGA-D7-6817 
  "DEL PEAK 24(10Q22.3) MUTATED"   "DEL PEAK 24(10Q22.3) MUTATED" 
                    TCGA-D7-6818                     TCGA-D7-6820 
"DEL PEAK 24(10Q22.3) WILD-TYPE" "DEL PEAK 24(10Q22.3) WILD-TYPE" 
                    TCGA-D7-6822                     TCGA-EQ-5647 
"DEL PEAK 24(10Q22.3) WILD-TYPE" "DEL PEAK 24(10Q22.3) WILD-TYPE" 
                    TCGA-EQ-8122                     TCGA-F1-6177 
"DEL PEAK 24(10Q22.3) WILD-TYPE" "DEL PEAK 24(10Q22.3) WILD-TYPE" 
                    TCGA-F1-6874                     TCGA-F1-6875 
"DEL PEAK 24(10Q22.3) WILD-TYPE" "DEL PEAK 24(10Q22.3) WILD-TYPE" 
                    TCGA-FP-7735                     TCGA-FP-7829 
"DEL PEAK 24(10Q22.3) WILD-TYPE"   "DEL PEAK 24(10Q22.3) MUTATED" 
                    TCGA-FP-7916                     TCGA-FP-7998 
"DEL PEAK 24(10Q22.3) WILD-TYPE" "DEL PEAK 24(10Q22.3) WILD-TYPE" 
                    TCGA-HJ-7597                     TCGA-IN-7806 
"DEL PEAK 24(10Q22.3) WILD-TYPE" "DEL PEAK 24(10Q22.3) WILD-TYPE" 
                    TCGA-IN-7808                     TCGA-IP-7968 
"DEL PEAK 24(10Q22.3) WILD-TYPE" "DEL PEAK 24(10Q22.3) WILD-TYPE" 
                    TCGA-B7-5816                     TCGA-B7-5818 
"DEL PEAK 24(10Q22.3) WILD-TYPE" "DEL PEAK 24(10Q22.3) WILD-TYPE" 
                    TCGA-BR-6452                     TCGA-BR-6455 
"DEL PEAK 24(10Q22.3) WILD-TYPE" "DEL PEAK 24(10Q22.3) WILD-TYPE" 
                    TCGA-BR-6457                     TCGA-BR-6458 
"DEL PEAK 24(10Q22.3) WILD-TYPE" "DEL PEAK 24(10Q22.3) WILD-TYPE" 
                    TCGA-BR-6563                     TCGA-BR-6564 
"DEL PEAK 24(10Q22.3) WILD-TYPE" "DEL PEAK 24(10Q22.3) WILD-TYPE" 
                    TCGA-BR-6565                     TCGA-BR-6566 
"DEL PEAK 24(10Q22.3) WILD-TYPE" "DEL PEAK 24(10Q22.3) WILD-TYPE" 
                    TCGA-BR-6705                     TCGA-BR-6706 
"DEL PEAK 24(10Q22.3) WILD-TYPE" "DEL PEAK 24(10Q22.3) WILD-TYPE" 
                    TCGA-BR-6707                     TCGA-BR-6709 
"DEL PEAK 24(10Q22.3) WILD-TYPE" "DEL PEAK 24(10Q22.3) WILD-TYPE" 
                    TCGA-BR-6710                     TCGA-BR-6801 
"DEL PEAK 24(10Q22.3) WILD-TYPE" "DEL PEAK 24(10Q22.3) WILD-TYPE" 
                    TCGA-BR-6802                     TCGA-BR-6803 
"DEL PEAK 24(10Q22.3) WILD-TYPE" "DEL PEAK 24(10Q22.3) WILD-TYPE" 
                    TCGA-BR-6852                     TCGA-BR-7196 
"DEL PEAK 24(10Q22.3) WILD-TYPE" "DEL PEAK 24(10Q22.3) WILD-TYPE" 
                    TCGA-BR-7197                     TCGA-BR-7703 
"DEL PEAK 24(10Q22.3) WILD-TYPE" "DEL PEAK 24(10Q22.3) WILD-TYPE" 
                    TCGA-BR-7704                     TCGA-BR-7707 
"DEL PEAK 24(10Q22.3) WILD-TYPE" "DEL PEAK 24(10Q22.3) WILD-TYPE" 
                    TCGA-BR-7715                     TCGA-BR-7716 
"DEL PEAK 24(10Q22.3) WILD-TYPE"   "DEL PEAK 24(10Q22.3) MUTATED" 
                    TCGA-BR-7717                     TCGA-BR-7722 
"DEL PEAK 24(10Q22.3) WILD-TYPE" "DEL PEAK 24(10Q22.3) WILD-TYPE" 
                    TCGA-BR-7723                     TCGA-BR-7851 
  "DEL PEAK 24(10Q22.3) MUTATED" "DEL PEAK 24(10Q22.3) WILD-TYPE" 
                    TCGA-BR-7901                     TCGA-BR-7957 
  "DEL PEAK 24(10Q22.3) MUTATED" "DEL PEAK 24(10Q22.3) WILD-TYPE" 
                    TCGA-BR-7958                     TCGA-BR-7959 
"DEL PEAK 24(10Q22.3) WILD-TYPE" "DEL PEAK 24(10Q22.3) WILD-TYPE" 
                    TCGA-BR-8059                     TCGA-BR-8060 
"DEL PEAK 24(10Q22.3) WILD-TYPE" "DEL PEAK 24(10Q22.3) WILD-TYPE" 
                    TCGA-BR-8077                     TCGA-BR-8078 
"DEL PEAK 24(10Q22.3) WILD-TYPE" "DEL PEAK 24(10Q22.3) WILD-TYPE" 
                    TCGA-BR-8080                     TCGA-BR-8081 
"DEL PEAK 24(10Q22.3) WILD-TYPE" "DEL PEAK 24(10Q22.3) WILD-TYPE" 
                    TCGA-BR-8284                     TCGA-BR-8285 
"DEL PEAK 24(10Q22.3) WILD-TYPE" "DEL PEAK 24(10Q22.3) WILD-TYPE" 
                    TCGA-BR-8286                     TCGA-BR-8289 
"DEL PEAK 24(10Q22.3) WILD-TYPE" "DEL PEAK 24(10Q22.3) WILD-TYPE" 
                    TCGA-BR-8291                     TCGA-BR-8295 
"DEL PEAK 24(10Q22.3) WILD-TYPE" "DEL PEAK 24(10Q22.3) WILD-TYPE" 
                    TCGA-BR-8296                     TCGA-BR-8297 
"DEL PEAK 24(10Q22.3) WILD-TYPE" "DEL PEAK 24(10Q22.3) WILD-TYPE" 
                    TCGA-CD-5798                     TCGA-CD-5799 
"DEL PEAK 24(10Q22.3) WILD-TYPE"   "DEL PEAK 24(10Q22.3) MUTATED" 
                    TCGA-CD-5800                     TCGA-CD-5801 
"DEL PEAK 24(10Q22.3) WILD-TYPE" "DEL PEAK 24(10Q22.3) WILD-TYPE" 
                    TCGA-CD-5802                     TCGA-CD-5803 
  "DEL PEAK 24(10Q22.3) MUTATED" "DEL PEAK 24(10Q22.3) WILD-TYPE" 
                    TCGA-CG-4300                     TCGA-CG-4301 
"DEL PEAK 24(10Q22.3) WILD-TYPE" "DEL PEAK 24(10Q22.3) WILD-TYPE" 
                    TCGA-CG-4304                     TCGA-CG-4305 
"DEL PEAK 24(10Q22.3) WILD-TYPE" "DEL PEAK 24(10Q22.3) WILD-TYPE" 
                    TCGA-CG-4306                     TCGA-CG-4436 
"DEL PEAK 24(10Q22.3) WILD-TYPE"   "DEL PEAK 24(10Q22.3) MUTATED" 
                    TCGA-CG-4437                     TCGA-CG-4438 
"DEL PEAK 24(10Q22.3) WILD-TYPE" "DEL PEAK 24(10Q22.3) WILD-TYPE" 
                    TCGA-CG-4440                     TCGA-CG-4441 
  "DEL PEAK 24(10Q22.3) MUTATED"   "DEL PEAK 24(10Q22.3) MUTATED" 
                    TCGA-CG-4443                     TCGA-CG-4444 
"DEL PEAK 24(10Q22.3) WILD-TYPE" "DEL PEAK 24(10Q22.3) WILD-TYPE" 
                    TCGA-CG-4449                     TCGA-CG-4455 
"DEL PEAK 24(10Q22.3) WILD-TYPE"   "DEL PEAK 24(10Q22.3) MUTATED" 
                    TCGA-CG-4460                     TCGA-CG-4462 
"DEL PEAK 24(10Q22.3) WILD-TYPE" "DEL PEAK 24(10Q22.3) WILD-TYPE" 
                    TCGA-CG-4465                     TCGA-CG-4466 
"DEL PEAK 24(10Q22.3) WILD-TYPE"   "DEL PEAK 24(10Q22.3) MUTATED" 
                    TCGA-CG-4469                     TCGA-CG-4472 
"DEL PEAK 24(10Q22.3) WILD-TYPE" "DEL PEAK 24(10Q22.3) WILD-TYPE" 
                    TCGA-CG-4474                     TCGA-CG-4477 
"DEL PEAK 24(10Q22.3) WILD-TYPE" "DEL PEAK 24(10Q22.3) WILD-TYPE" 
                    TCGA-CG-5716                     TCGA-CG-5717 
"DEL PEAK 24(10Q22.3) WILD-TYPE" "DEL PEAK 24(10Q22.3) WILD-TYPE" 
                    TCGA-CG-5718                     TCGA-CG-5719 
  "DEL PEAK 24(10Q22.3) MUTATED" "DEL PEAK 24(10Q22.3) WILD-TYPE" 
                    TCGA-CG-5720                     TCGA-CG-5721 
"DEL PEAK 24(10Q22.3) WILD-TYPE" "DEL PEAK 24(10Q22.3) WILD-TYPE" 
                    TCGA-CG-5722                     TCGA-CG-5723 
"DEL PEAK 24(10Q22.3) WILD-TYPE" "DEL PEAK 24(10Q22.3) WILD-TYPE" 
                    TCGA-CG-5724                     TCGA-CG-5725 
"DEL PEAK 24(10Q22.3) WILD-TYPE" "DEL PEAK 24(10Q22.3) WILD-TYPE" 
                    TCGA-CG-5726                     TCGA-CG-5727 
"DEL PEAK 24(10Q22.3) WILD-TYPE" "DEL PEAK 24(10Q22.3) WILD-TYPE" 
                    TCGA-CG-5728                     TCGA-CG-5730 
"DEL PEAK 24(10Q22.3) WILD-TYPE"   "DEL PEAK 24(10Q22.3) MUTATED" 
                    TCGA-CG-5732                     TCGA-CG-5733 
"DEL PEAK 24(10Q22.3) WILD-TYPE" "DEL PEAK 24(10Q22.3) WILD-TYPE" 
                    TCGA-CG-5734                     TCGA-D7-5577 
"DEL PEAK 24(10Q22.3) WILD-TYPE" "DEL PEAK 24(10Q22.3) WILD-TYPE" 
                    TCGA-D7-5578                     TCGA-D7-5579 
"DEL PEAK 24(10Q22.3) WILD-TYPE" "DEL PEAK 24(10Q22.3) WILD-TYPE" 
                    TCGA-D7-6518                     TCGA-D7-6519 
  "DEL PEAK 24(10Q22.3) MUTATED" "DEL PEAK 24(10Q22.3) WILD-TYPE" 
                    TCGA-D7-6520                     TCGA-D7-6521 
"DEL PEAK 24(10Q22.3) WILD-TYPE"   "DEL PEAK 24(10Q22.3) MUTATED" 
                    TCGA-D7-6522                     TCGA-D7-6524 
"DEL PEAK 24(10Q22.3) WILD-TYPE" "DEL PEAK 24(10Q22.3) WILD-TYPE" 
                    TCGA-D7-6525                     TCGA-D7-6526 
"DEL PEAK 24(10Q22.3) WILD-TYPE" "DEL PEAK 24(10Q22.3) WILD-TYPE" 
                    TCGA-D7-6527                     TCGA-D7-6528 
  "DEL PEAK 24(10Q22.3) MUTATED"   "DEL PEAK 24(10Q22.3) MUTATED" 
                    TCGA-D7-6815                     TCGA-D7-6817 
  "DEL PEAK 24(10Q22.3) MUTATED"   "DEL PEAK 24(10Q22.3) MUTATED" 
                    TCGA-D7-6818                     TCGA-D7-6820 
"DEL PEAK 24(10Q22.3) WILD-TYPE" "DEL PEAK 24(10Q22.3) WILD-TYPE" 
                    TCGA-D7-6822                     TCGA-EQ-5647 
"DEL PEAK 24(10Q22.3) WILD-TYPE" "DEL PEAK 24(10Q22.3) WILD-TYPE" 
                    TCGA-EQ-8122                     TCGA-F1-6177 
"DEL PEAK 24(10Q22.3) WILD-TYPE" "DEL PEAK 24(10Q22.3) WILD-TYPE" 
                    TCGA-F1-6874                     TCGA-F1-6875 
"DEL PEAK 24(10Q22.3) WILD-TYPE" "DEL PEAK 24(10Q22.3) WILD-TYPE" 
                    TCGA-FP-7735                     TCGA-FP-7829 
"DEL PEAK 24(10Q22.3) WILD-TYPE"   "DEL PEAK 24(10Q22.3) MUTATED" 
                    TCGA-FP-7916                     TCGA-FP-7998 
"DEL PEAK 24(10Q22.3) WILD-TYPE" "DEL PEAK 24(10Q22.3) WILD-TYPE" 
                    TCGA-HJ-7597                     TCGA-IN-7806 
"DEL PEAK 24(10Q22.3) WILD-TYPE" "DEL PEAK 24(10Q22.3) WILD-TYPE" 
                    TCGA-IN-7808                     TCGA-IP-7968 
"DEL PEAK 24(10Q22.3) WILD-TYPE" "DEL PEAK 24(10Q22.3) WILD-TYPE" 
[1] "hr=" "1.1"
D50V2, continuous
D50V3, binary
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  DEL PEAK 24(10Q22.3) MUTATED      8   16
  DEL PEAK 24(10Q22.3) WILD-TYPE   57   80
        clus
vv       DEL PEAK 24(10Q22.3) MUTATED DEL PEAK 24(10Q22.3) WILD-TYPE
  FEMALE                            8                             57
  MALE                             16                             80
D50V4, multiclass
D50V5, multiclass
    clus
vv   DEL PEAK 24(10Q22.3) MUTATED DEL PEAK 24(10Q22.3) WILD-TYPE
  T1                            0                              6
  T2                           13                             40
  T3                            6                             53
  T4                            1                             32
D50V6, multiclass
    clus
vv   DEL PEAK 24(10Q22.3) MUTATED DEL PEAK 24(10Q22.3) WILD-TYPE
  N0                            4                             46
  N1                           10                             47
  N2                            4                             20
  N3                            3                             16
D50V7, multiclass
    clus
vv   DEL PEAK 24(10Q22.3) MUTATED DEL PEAK 24(10Q22.3) WILD-TYPE
  M0                           22                            110
  M1                            2                             16
  MX                            0                             11
D50V8, multiclass
     clus
vv    DEL PEAK 24(10Q22.3) MUTATED DEL PEAK 24(10Q22.3) WILD-TYPE
  I                              3                             22
  II                             7                             36
  III                            6                             42
  IV                             4                             25
D50V9, binary
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  DEL PEAK 24(10Q22.3) MUTATED     23    1
  DEL PEAK 24(10Q22.3) WILD-TYPE  133    4
     clus
vv    DEL PEAK 24(10Q22.3) MUTATED DEL PEAK 24(10Q22.3) WILD-TYPE
  NO                             1                              4
  YES                           23                            133

Clustering(51) Variable = Del Peak 25(10q23.31) mutation analysis
D51V1, survival
                     TCGA-B7-5816                      TCGA-B7-5818 
"DEL PEAK 25(10Q23.31) WILD-TYPE"   "DEL PEAK 25(10Q23.31) MUTATED" 
                     TCGA-BR-6452                      TCGA-BR-6455 
"DEL PEAK 25(10Q23.31) WILD-TYPE"   "DEL PEAK 25(10Q23.31) MUTATED" 
                     TCGA-BR-6457                      TCGA-BR-6458 
"DEL PEAK 25(10Q23.31) WILD-TYPE" "DEL PEAK 25(10Q23.31) WILD-TYPE" 
                     TCGA-BR-6563                      TCGA-BR-6564 
"DEL PEAK 25(10Q23.31) WILD-TYPE" "DEL PEAK 25(10Q23.31) WILD-TYPE" 
                     TCGA-BR-6565                      TCGA-BR-6566 
"DEL PEAK 25(10Q23.31) WILD-TYPE" "DEL PEAK 25(10Q23.31) WILD-TYPE" 
                     TCGA-BR-6705                      TCGA-BR-6706 
"DEL PEAK 25(10Q23.31) WILD-TYPE" "DEL PEAK 25(10Q23.31) WILD-TYPE" 
                     TCGA-BR-6707                      TCGA-BR-6709 
"DEL PEAK 25(10Q23.31) WILD-TYPE" "DEL PEAK 25(10Q23.31) WILD-TYPE" 
                     TCGA-BR-6710                      TCGA-BR-6801 
"DEL PEAK 25(10Q23.31) WILD-TYPE" "DEL PEAK 25(10Q23.31) WILD-TYPE" 
                     TCGA-BR-6802                      TCGA-BR-6803 
"DEL PEAK 25(10Q23.31) WILD-TYPE" "DEL PEAK 25(10Q23.31) WILD-TYPE" 
                     TCGA-BR-6852                      TCGA-BR-7196 
"DEL PEAK 25(10Q23.31) WILD-TYPE" "DEL PEAK 25(10Q23.31) WILD-TYPE" 
                     TCGA-BR-7197                      TCGA-BR-7703 
"DEL PEAK 25(10Q23.31) WILD-TYPE" "DEL PEAK 25(10Q23.31) WILD-TYPE" 
                     TCGA-BR-7704                      TCGA-BR-7707 
  "DEL PEAK 25(10Q23.31) MUTATED" "DEL PEAK 25(10Q23.31) WILD-TYPE" 
                     TCGA-BR-7715                      TCGA-BR-7716 
"DEL PEAK 25(10Q23.31) WILD-TYPE"   "DEL PEAK 25(10Q23.31) MUTATED" 
                     TCGA-BR-7717                      TCGA-BR-7722 
"DEL PEAK 25(10Q23.31) WILD-TYPE" "DEL PEAK 25(10Q23.31) WILD-TYPE" 
                     TCGA-BR-7723                      TCGA-BR-7851 
  "DEL PEAK 25(10Q23.31) MUTATED" "DEL PEAK 25(10Q23.31) WILD-TYPE" 
                     TCGA-BR-7901                      TCGA-BR-7957 
  "DEL PEAK 25(10Q23.31) MUTATED" "DEL PEAK 25(10Q23.31) WILD-TYPE" 
                     TCGA-BR-7958                      TCGA-BR-7959 
"DEL PEAK 25(10Q23.31) WILD-TYPE" "DEL PEAK 25(10Q23.31) WILD-TYPE" 
                     TCGA-BR-8059                      TCGA-BR-8060 
"DEL PEAK 25(10Q23.31) WILD-TYPE" "DEL PEAK 25(10Q23.31) WILD-TYPE" 
                     TCGA-BR-8077                      TCGA-BR-8078 
"DEL PEAK 25(10Q23.31) WILD-TYPE" "DEL PEAK 25(10Q23.31) WILD-TYPE" 
                     TCGA-BR-8080                      TCGA-BR-8081 
"DEL PEAK 25(10Q23.31) WILD-TYPE" "DEL PEAK 25(10Q23.31) WILD-TYPE" 
                     TCGA-BR-8284                      TCGA-BR-8285 
"DEL PEAK 25(10Q23.31) WILD-TYPE" "DEL PEAK 25(10Q23.31) WILD-TYPE" 
                     TCGA-BR-8286                      TCGA-BR-8289 
"DEL PEAK 25(10Q23.31) WILD-TYPE" "DEL PEAK 25(10Q23.31) WILD-TYPE" 
                     TCGA-BR-8291                      TCGA-BR-8295 
"DEL PEAK 25(10Q23.31) WILD-TYPE" "DEL PEAK 25(10Q23.31) WILD-TYPE" 
                     TCGA-BR-8296                      TCGA-BR-8297 
"DEL PEAK 25(10Q23.31) WILD-TYPE" "DEL PEAK 25(10Q23.31) WILD-TYPE" 
                     TCGA-CD-5798                      TCGA-CD-5799 
"DEL PEAK 25(10Q23.31) WILD-TYPE"   "DEL PEAK 25(10Q23.31) MUTATED" 
                     TCGA-CD-5800                      TCGA-CD-5801 
"DEL PEAK 25(10Q23.31) WILD-TYPE" "DEL PEAK 25(10Q23.31) WILD-TYPE" 
                     TCGA-CD-5802                      TCGA-CD-5803 
  "DEL PEAK 25(10Q23.31) MUTATED" "DEL PEAK 25(10Q23.31) WILD-TYPE" 
                     TCGA-CG-4300                      TCGA-CG-4301 
"DEL PEAK 25(10Q23.31) WILD-TYPE" "DEL PEAK 25(10Q23.31) WILD-TYPE" 
                     TCGA-CG-4304                      TCGA-CG-4305 
  "DEL PEAK 25(10Q23.31) MUTATED" "DEL PEAK 25(10Q23.31) WILD-TYPE" 
                     TCGA-CG-4306                      TCGA-CG-4436 
"DEL PEAK 25(10Q23.31) WILD-TYPE"   "DEL PEAK 25(10Q23.31) MUTATED" 
                     TCGA-CG-4437                      TCGA-CG-4438 
  "DEL PEAK 25(10Q23.31) MUTATED" "DEL PEAK 25(10Q23.31) WILD-TYPE" 
                     TCGA-CG-4440                      TCGA-CG-4441 
  "DEL PEAK 25(10Q23.31) MUTATED"   "DEL PEAK 25(10Q23.31) MUTATED" 
                     TCGA-CG-4443                      TCGA-CG-4444 
  "DEL PEAK 25(10Q23.31) MUTATED"   "DEL PEAK 25(10Q23.31) MUTATED" 
                     TCGA-CG-4449                      TCGA-CG-4455 
"DEL PEAK 25(10Q23.31) WILD-TYPE"   "DEL PEAK 25(10Q23.31) MUTATED" 
                     TCGA-CG-4460                      TCGA-CG-4462 
  "DEL PEAK 25(10Q23.31) MUTATED" "DEL PEAK 25(10Q23.31) WILD-TYPE" 
                     TCGA-CG-4465                      TCGA-CG-4466 
"DEL PEAK 25(10Q23.31) WILD-TYPE"   "DEL PEAK 25(10Q23.31) MUTATED" 
                     TCGA-CG-4469                      TCGA-CG-4472 
"DEL PEAK 25(10Q23.31) WILD-TYPE" "DEL PEAK 25(10Q23.31) WILD-TYPE" 
                     TCGA-CG-4474                      TCGA-CG-4477 
"DEL PEAK 25(10Q23.31) WILD-TYPE" "DEL PEAK 25(10Q23.31) WILD-TYPE" 
                     TCGA-CG-5716                      TCGA-CG-5717 
"DEL PEAK 25(10Q23.31) WILD-TYPE" "DEL PEAK 25(10Q23.31) WILD-TYPE" 
                     TCGA-CG-5718                      TCGA-CG-5719 
  "DEL PEAK 25(10Q23.31) MUTATED" "DEL PEAK 25(10Q23.31) WILD-TYPE" 
                     TCGA-CG-5720                      TCGA-CG-5721 
"DEL PEAK 25(10Q23.31) WILD-TYPE" "DEL PEAK 25(10Q23.31) WILD-TYPE" 
                     TCGA-CG-5722                      TCGA-CG-5723 
"DEL PEAK 25(10Q23.31) WILD-TYPE" "DEL PEAK 25(10Q23.31) WILD-TYPE" 
                     TCGA-CG-5724                      TCGA-CG-5725 
"DEL PEAK 25(10Q23.31) WILD-TYPE"   "DEL PEAK 25(10Q23.31) MUTATED" 
                     TCGA-CG-5726                      TCGA-CG-5727 
"DEL PEAK 25(10Q23.31) WILD-TYPE" "DEL PEAK 25(10Q23.31) WILD-TYPE" 
                     TCGA-CG-5728                      TCGA-CG-5730 
"DEL PEAK 25(10Q23.31) WILD-TYPE"   "DEL PEAK 25(10Q23.31) MUTATED" 
                     TCGA-CG-5732                      TCGA-CG-5733 
  "DEL PEAK 25(10Q23.31) MUTATED" "DEL PEAK 25(10Q23.31) WILD-TYPE" 
                     TCGA-CG-5734                      TCGA-D7-5577 
"DEL PEAK 25(10Q23.31) WILD-TYPE"   "DEL PEAK 25(10Q23.31) MUTATED" 
                     TCGA-D7-5578                      TCGA-D7-5579 
"DEL PEAK 25(10Q23.31) WILD-TYPE" "DEL PEAK 25(10Q23.31) WILD-TYPE" 
                     TCGA-D7-6518                      TCGA-D7-6519 
  "DEL PEAK 25(10Q23.31) MUTATED" "DEL PEAK 25(10Q23.31) WILD-TYPE" 
                     TCGA-D7-6520                      TCGA-D7-6521 
"DEL PEAK 25(10Q23.31) WILD-TYPE"   "DEL PEAK 25(10Q23.31) MUTATED" 
                     TCGA-D7-6522                      TCGA-D7-6524 
"DEL PEAK 25(10Q23.31) WILD-TYPE" "DEL PEAK 25(10Q23.31) WILD-TYPE" 
                     TCGA-D7-6525                      TCGA-D7-6526 
"DEL PEAK 25(10Q23.31) WILD-TYPE" "DEL PEAK 25(10Q23.31) WILD-TYPE" 
                     TCGA-D7-6527                      TCGA-D7-6528 
  "DEL PEAK 25(10Q23.31) MUTATED"   "DEL PEAK 25(10Q23.31) MUTATED" 
                     TCGA-D7-6815                      TCGA-D7-6817 
  "DEL PEAK 25(10Q23.31) MUTATED"   "DEL PEAK 25(10Q23.31) MUTATED" 
                     TCGA-D7-6818                      TCGA-D7-6820 
"DEL PEAK 25(10Q23.31) WILD-TYPE" "DEL PEAK 25(10Q23.31) WILD-TYPE" 
                     TCGA-D7-6822                      TCGA-EQ-5647 
"DEL PEAK 25(10Q23.31) WILD-TYPE" "DEL PEAK 25(10Q23.31) WILD-TYPE" 
                     TCGA-EQ-8122                      TCGA-F1-6177 
"DEL PEAK 25(10Q23.31) WILD-TYPE" "DEL PEAK 25(10Q23.31) WILD-TYPE" 
                     TCGA-F1-6874                      TCGA-F1-6875 
"DEL PEAK 25(10Q23.31) WILD-TYPE" "DEL PEAK 25(10Q23.31) WILD-TYPE" 
                     TCGA-FP-7735                      TCGA-FP-7829 
  "DEL PEAK 25(10Q23.31) MUTATED"   "DEL PEAK 25(10Q23.31) MUTATED" 
                     TCGA-FP-7916                      TCGA-FP-7998 
"DEL PEAK 25(10Q23.31) WILD-TYPE" "DEL PEAK 25(10Q23.31) WILD-TYPE" 
                     TCGA-HJ-7597                      TCGA-IN-7806 
"DEL PEAK 25(10Q23.31) WILD-TYPE" "DEL PEAK 25(10Q23.31) WILD-TYPE" 
                     TCGA-IN-7808                      TCGA-IP-7968 
"DEL PEAK 25(10Q23.31) WILD-TYPE" "DEL PEAK 25(10Q23.31) WILD-TYPE" 
                     TCGA-B7-5816                      TCGA-B7-5818 
"DEL PEAK 25(10Q23.31) WILD-TYPE"   "DEL PEAK 25(10Q23.31) MUTATED" 
                     TCGA-BR-6452                      TCGA-BR-6455 
"DEL PEAK 25(10Q23.31) WILD-TYPE"   "DEL PEAK 25(10Q23.31) MUTATED" 
                     TCGA-BR-6457                      TCGA-BR-6458 
"DEL PEAK 25(10Q23.31) WILD-TYPE" "DEL PEAK 25(10Q23.31) WILD-TYPE" 
                     TCGA-BR-6563                      TCGA-BR-6564 
"DEL PEAK 25(10Q23.31) WILD-TYPE" "DEL PEAK 25(10Q23.31) WILD-TYPE" 
                     TCGA-BR-6565                      TCGA-BR-6566 
"DEL PEAK 25(10Q23.31) WILD-TYPE" "DEL PEAK 25(10Q23.31) WILD-TYPE" 
                     TCGA-BR-6705                      TCGA-BR-6706 
"DEL PEAK 25(10Q23.31) WILD-TYPE" "DEL PEAK 25(10Q23.31) WILD-TYPE" 
                     TCGA-BR-6707                      TCGA-BR-6709 
"DEL PEAK 25(10Q23.31) WILD-TYPE" "DEL PEAK 25(10Q23.31) WILD-TYPE" 
                     TCGA-BR-6710                      TCGA-BR-6801 
"DEL PEAK 25(10Q23.31) WILD-TYPE" "DEL PEAK 25(10Q23.31) WILD-TYPE" 
                     TCGA-BR-6802                      TCGA-BR-6803 
"DEL PEAK 25(10Q23.31) WILD-TYPE" "DEL PEAK 25(10Q23.31) WILD-TYPE" 
                     TCGA-BR-6852                      TCGA-BR-7196 
"DEL PEAK 25(10Q23.31) WILD-TYPE" "DEL PEAK 25(10Q23.31) WILD-TYPE" 
                     TCGA-BR-7197                      TCGA-BR-7703 
"DEL PEAK 25(10Q23.31) WILD-TYPE" "DEL PEAK 25(10Q23.31) WILD-TYPE" 
                     TCGA-BR-7704                      TCGA-BR-7707 
  "DEL PEAK 25(10Q23.31) MUTATED" "DEL PEAK 25(10Q23.31) WILD-TYPE" 
                     TCGA-BR-7715                      TCGA-BR-7716 
"DEL PEAK 25(10Q23.31) WILD-TYPE"   "DEL PEAK 25(10Q23.31) MUTATED" 
                     TCGA-BR-7717                      TCGA-BR-7722 
"DEL PEAK 25(10Q23.31) WILD-TYPE" "DEL PEAK 25(10Q23.31) WILD-TYPE" 
                     TCGA-BR-7723                      TCGA-BR-7851 
  "DEL PEAK 25(10Q23.31) MUTATED" "DEL PEAK 25(10Q23.31) WILD-TYPE" 
                     TCGA-BR-7901                      TCGA-BR-7957 
  "DEL PEAK 25(10Q23.31) MUTATED" "DEL PEAK 25(10Q23.31) WILD-TYPE" 
                     TCGA-BR-7958                      TCGA-BR-7959 
"DEL PEAK 25(10Q23.31) WILD-TYPE" "DEL PEAK 25(10Q23.31) WILD-TYPE" 
                     TCGA-BR-8059                      TCGA-BR-8060 
"DEL PEAK 25(10Q23.31) WILD-TYPE" "DEL PEAK 25(10Q23.31) WILD-TYPE" 
                     TCGA-BR-8077                      TCGA-BR-8078 
"DEL PEAK 25(10Q23.31) WILD-TYPE" "DEL PEAK 25(10Q23.31) WILD-TYPE" 
                     TCGA-BR-8080                      TCGA-BR-8081 
"DEL PEAK 25(10Q23.31) WILD-TYPE" "DEL PEAK 25(10Q23.31) WILD-TYPE" 
                     TCGA-BR-8284                      TCGA-BR-8285 
"DEL PEAK 25(10Q23.31) WILD-TYPE" "DEL PEAK 25(10Q23.31) WILD-TYPE" 
                     TCGA-BR-8286                      TCGA-BR-8289 
"DEL PEAK 25(10Q23.31) WILD-TYPE" "DEL PEAK 25(10Q23.31) WILD-TYPE" 
                     TCGA-BR-8291                      TCGA-BR-8295 
"DEL PEAK 25(10Q23.31) WILD-TYPE" "DEL PEAK 25(10Q23.31) WILD-TYPE" 
                     TCGA-BR-8296                      TCGA-BR-8297 
"DEL PEAK 25(10Q23.31) WILD-TYPE" "DEL PEAK 25(10Q23.31) WILD-TYPE" 
                     TCGA-CD-5798                      TCGA-CD-5799 
"DEL PEAK 25(10Q23.31) WILD-TYPE"   "DEL PEAK 25(10Q23.31) MUTATED" 
                     TCGA-CD-5800                      TCGA-CD-5801 
"DEL PEAK 25(10Q23.31) WILD-TYPE" "DEL PEAK 25(10Q23.31) WILD-TYPE" 
                     TCGA-CD-5802                      TCGA-CD-5803 
  "DEL PEAK 25(10Q23.31) MUTATED" "DEL PEAK 25(10Q23.31) WILD-TYPE" 
                     TCGA-CG-4300                      TCGA-CG-4301 
"DEL PEAK 25(10Q23.31) WILD-TYPE" "DEL PEAK 25(10Q23.31) WILD-TYPE" 
                     TCGA-CG-4304                      TCGA-CG-4305 
  "DEL PEAK 25(10Q23.31) MUTATED" "DEL PEAK 25(10Q23.31) WILD-TYPE" 
                     TCGA-CG-4306                      TCGA-CG-4436 
"DEL PEAK 25(10Q23.31) WILD-TYPE"   "DEL PEAK 25(10Q23.31) MUTATED" 
                     TCGA-CG-4437                      TCGA-CG-4438 
  "DEL PEAK 25(10Q23.31) MUTATED" "DEL PEAK 25(10Q23.31) WILD-TYPE" 
                     TCGA-CG-4440                      TCGA-CG-4441 
  "DEL PEAK 25(10Q23.31) MUTATED"   "DEL PEAK 25(10Q23.31) MUTATED" 
                     TCGA-CG-4443                      TCGA-CG-4444 
  "DEL PEAK 25(10Q23.31) MUTATED"   "DEL PEAK 25(10Q23.31) MUTATED" 
                     TCGA-CG-4449                      TCGA-CG-4455 
"DEL PEAK 25(10Q23.31) WILD-TYPE"   "DEL PEAK 25(10Q23.31) MUTATED" 
                     TCGA-CG-4460                      TCGA-CG-4462 
  "DEL PEAK 25(10Q23.31) MUTATED" "DEL PEAK 25(10Q23.31) WILD-TYPE" 
                     TCGA-CG-4465                      TCGA-CG-4466 
"DEL PEAK 25(10Q23.31) WILD-TYPE"   "DEL PEAK 25(10Q23.31) MUTATED" 
                     TCGA-CG-4469                      TCGA-CG-4472 
"DEL PEAK 25(10Q23.31) WILD-TYPE" "DEL PEAK 25(10Q23.31) WILD-TYPE" 
                     TCGA-CG-4474                      TCGA-CG-4477 
"DEL PEAK 25(10Q23.31) WILD-TYPE" "DEL PEAK 25(10Q23.31) WILD-TYPE" 
                     TCGA-CG-5716                      TCGA-CG-5717 
"DEL PEAK 25(10Q23.31) WILD-TYPE" "DEL PEAK 25(10Q23.31) WILD-TYPE" 
                     TCGA-CG-5718                      TCGA-CG-5719 
  "DEL PEAK 25(10Q23.31) MUTATED" "DEL PEAK 25(10Q23.31) WILD-TYPE" 
                     TCGA-CG-5720                      TCGA-CG-5721 
"DEL PEAK 25(10Q23.31) WILD-TYPE" "DEL PEAK 25(10Q23.31) WILD-TYPE" 
                     TCGA-CG-5722                      TCGA-CG-5723 
"DEL PEAK 25(10Q23.31) WILD-TYPE" "DEL PEAK 25(10Q23.31) WILD-TYPE" 
                     TCGA-CG-5724                      TCGA-CG-5725 
"DEL PEAK 25(10Q23.31) WILD-TYPE"   "DEL PEAK 25(10Q23.31) MUTATED" 
                     TCGA-CG-5726                      TCGA-CG-5727 
"DEL PEAK 25(10Q23.31) WILD-TYPE" "DEL PEAK 25(10Q23.31) WILD-TYPE" 
                     TCGA-CG-5728                      TCGA-CG-5730 
"DEL PEAK 25(10Q23.31) WILD-TYPE"   "DEL PEAK 25(10Q23.31) MUTATED" 
                     TCGA-CG-5732                      TCGA-CG-5733 
  "DEL PEAK 25(10Q23.31) MUTATED" "DEL PEAK 25(10Q23.31) WILD-TYPE" 
                     TCGA-CG-5734                      TCGA-D7-5577 
"DEL PEAK 25(10Q23.31) WILD-TYPE"   "DEL PEAK 25(10Q23.31) MUTATED" 
                     TCGA-D7-5578                      TCGA-D7-5579 
"DEL PEAK 25(10Q23.31) WILD-TYPE" "DEL PEAK 25(10Q23.31) WILD-TYPE" 
                     TCGA-D7-6518                      TCGA-D7-6519 
  "DEL PEAK 25(10Q23.31) MUTATED" "DEL PEAK 25(10Q23.31) WILD-TYPE" 
                     TCGA-D7-6520                      TCGA-D7-6521 
"DEL PEAK 25(10Q23.31) WILD-TYPE"   "DEL PEAK 25(10Q23.31) MUTATED" 
                     TCGA-D7-6522                      TCGA-D7-6524 
"DEL PEAK 25(10Q23.31) WILD-TYPE" "DEL PEAK 25(10Q23.31) WILD-TYPE" 
                     TCGA-D7-6525                      TCGA-D7-6526 
"DEL PEAK 25(10Q23.31) WILD-TYPE" "DEL PEAK 25(10Q23.31) WILD-TYPE" 
                     TCGA-D7-6527                      TCGA-D7-6528 
  "DEL PEAK 25(10Q23.31) MUTATED"   "DEL PEAK 25(10Q23.31) MUTATED" 
                     TCGA-D7-6815                      TCGA-D7-6817 
  "DEL PEAK 25(10Q23.31) MUTATED"   "DEL PEAK 25(10Q23.31) MUTATED" 
                     TCGA-D7-6818                      TCGA-D7-6820 
"DEL PEAK 25(10Q23.31) WILD-TYPE" "DEL PEAK 25(10Q23.31) WILD-TYPE" 
                     TCGA-D7-6822                      TCGA-EQ-5647 
"DEL PEAK 25(10Q23.31) WILD-TYPE" "DEL PEAK 25(10Q23.31) WILD-TYPE" 
                     TCGA-EQ-8122                      TCGA-F1-6177 
"DEL PEAK 25(10Q23.31) WILD-TYPE" "DEL PEAK 25(10Q23.31) WILD-TYPE" 
                     TCGA-F1-6874                      TCGA-F1-6875 
"DEL PEAK 25(10Q23.31) WILD-TYPE" "DEL PEAK 25(10Q23.31) WILD-TYPE" 
                     TCGA-FP-7735                      TCGA-FP-7829 
  "DEL PEAK 25(10Q23.31) MUTATED"   "DEL PEAK 25(10Q23.31) MUTATED" 
                     TCGA-FP-7916                      TCGA-FP-7998 
"DEL PEAK 25(10Q23.31) WILD-TYPE" "DEL PEAK 25(10Q23.31) WILD-TYPE" 
                     TCGA-HJ-7597                      TCGA-IN-7806 
"DEL PEAK 25(10Q23.31) WILD-TYPE" "DEL PEAK 25(10Q23.31) WILD-TYPE" 
                     TCGA-IN-7808                      TCGA-IP-7968 
"DEL PEAK 25(10Q23.31) WILD-TYPE" "DEL PEAK 25(10Q23.31) WILD-TYPE" 
                     TCGA-B7-5816                      TCGA-B7-5818 
"DEL PEAK 25(10Q23.31) WILD-TYPE"   "DEL PEAK 25(10Q23.31) MUTATED" 
                     TCGA-BR-6452                      TCGA-BR-6455 
"DEL PEAK 25(10Q23.31) WILD-TYPE"   "DEL PEAK 25(10Q23.31) MUTATED" 
                     TCGA-BR-6457                      TCGA-BR-6458 
"DEL PEAK 25(10Q23.31) WILD-TYPE" "DEL PEAK 25(10Q23.31) WILD-TYPE" 
                     TCGA-BR-6563                      TCGA-BR-6564 
"DEL PEAK 25(10Q23.31) WILD-TYPE" "DEL PEAK 25(10Q23.31) WILD-TYPE" 
                     TCGA-BR-6565                      TCGA-BR-6566 
"DEL PEAK 25(10Q23.31) WILD-TYPE" "DEL PEAK 25(10Q23.31) WILD-TYPE" 
                     TCGA-BR-6705                      TCGA-BR-6706 
"DEL PEAK 25(10Q23.31) WILD-TYPE" "DEL PEAK 25(10Q23.31) WILD-TYPE" 
                     TCGA-BR-6707                      TCGA-BR-6709 
"DEL PEAK 25(10Q23.31) WILD-TYPE" "DEL PEAK 25(10Q23.31) WILD-TYPE" 
                     TCGA-BR-6710                      TCGA-BR-6801 
"DEL PEAK 25(10Q23.31) WILD-TYPE" "DEL PEAK 25(10Q23.31) WILD-TYPE" 
                     TCGA-BR-6802                      TCGA-BR-6803 
"DEL PEAK 25(10Q23.31) WILD-TYPE" "DEL PEAK 25(10Q23.31) WILD-TYPE" 
                     TCGA-BR-6852                      TCGA-BR-7196 
"DEL PEAK 25(10Q23.31) WILD-TYPE" "DEL PEAK 25(10Q23.31) WILD-TYPE" 
                     TCGA-BR-7197                      TCGA-BR-7703 
"DEL PEAK 25(10Q23.31) WILD-TYPE" "DEL PEAK 25(10Q23.31) WILD-TYPE" 
                     TCGA-BR-7704                      TCGA-BR-7707 
  "DEL PEAK 25(10Q23.31) MUTATED" "DEL PEAK 25(10Q23.31) WILD-TYPE" 
                     TCGA-BR-7715                      TCGA-BR-7716 
"DEL PEAK 25(10Q23.31) WILD-TYPE"   "DEL PEAK 25(10Q23.31) MUTATED" 
                     TCGA-BR-7717                      TCGA-BR-7722 
"DEL PEAK 25(10Q23.31) WILD-TYPE" "DEL PEAK 25(10Q23.31) WILD-TYPE" 
                     TCGA-BR-7723                      TCGA-BR-7851 
  "DEL PEAK 25(10Q23.31) MUTATED" "DEL PEAK 25(10Q23.31) WILD-TYPE" 
                     TCGA-BR-7901                      TCGA-BR-7957 
  "DEL PEAK 25(10Q23.31) MUTATED" "DEL PEAK 25(10Q23.31) WILD-TYPE" 
                     TCGA-BR-7958                      TCGA-BR-7959 
"DEL PEAK 25(10Q23.31) WILD-TYPE" "DEL PEAK 25(10Q23.31) WILD-TYPE" 
                     TCGA-BR-8059                      TCGA-BR-8060 
"DEL PEAK 25(10Q23.31) WILD-TYPE" "DEL PEAK 25(10Q23.31) WILD-TYPE" 
                     TCGA-BR-8077                      TCGA-BR-8078 
"DEL PEAK 25(10Q23.31) WILD-TYPE" "DEL PEAK 25(10Q23.31) WILD-TYPE" 
                     TCGA-BR-8080                      TCGA-BR-8081 
"DEL PEAK 25(10Q23.31) WILD-TYPE" "DEL PEAK 25(10Q23.31) WILD-TYPE" 
                     TCGA-BR-8284                      TCGA-BR-8285 
"DEL PEAK 25(10Q23.31) WILD-TYPE" "DEL PEAK 25(10Q23.31) WILD-TYPE" 
                     TCGA-BR-8286                      TCGA-BR-8289 
"DEL PEAK 25(10Q23.31) WILD-TYPE" "DEL PEAK 25(10Q23.31) WILD-TYPE" 
                     TCGA-BR-8291                      TCGA-BR-8295 
"DEL PEAK 25(10Q23.31) WILD-TYPE" "DEL PEAK 25(10Q23.31) WILD-TYPE" 
                     TCGA-BR-8296                      TCGA-BR-8297 
"DEL PEAK 25(10Q23.31) WILD-TYPE" "DEL PEAK 25(10Q23.31) WILD-TYPE" 
                     TCGA-CD-5798                      TCGA-CD-5799 
"DEL PEAK 25(10Q23.31) WILD-TYPE"   "DEL PEAK 25(10Q23.31) MUTATED" 
                     TCGA-CD-5800                      TCGA-CD-5801 
"DEL PEAK 25(10Q23.31) WILD-TYPE" "DEL PEAK 25(10Q23.31) WILD-TYPE" 
                     TCGA-CD-5802                      TCGA-CD-5803 
  "DEL PEAK 25(10Q23.31) MUTATED" "DEL PEAK 25(10Q23.31) WILD-TYPE" 
                     TCGA-CG-4300                      TCGA-CG-4301 
"DEL PEAK 25(10Q23.31) WILD-TYPE" "DEL PEAK 25(10Q23.31) WILD-TYPE" 
                     TCGA-CG-4304                      TCGA-CG-4305 
  "DEL PEAK 25(10Q23.31) MUTATED" "DEL PEAK 25(10Q23.31) WILD-TYPE" 
                     TCGA-CG-4306                      TCGA-CG-4436 
"DEL PEAK 25(10Q23.31) WILD-TYPE"   "DEL PEAK 25(10Q23.31) MUTATED" 
                     TCGA-CG-4437                      TCGA-CG-4438 
  "DEL PEAK 25(10Q23.31) MUTATED" "DEL PEAK 25(10Q23.31) WILD-TYPE" 
                     TCGA-CG-4440                      TCGA-CG-4441 
  "DEL PEAK 25(10Q23.31) MUTATED"   "DEL PEAK 25(10Q23.31) MUTATED" 
                     TCGA-CG-4443                      TCGA-CG-4444 
  "DEL PEAK 25(10Q23.31) MUTATED"   "DEL PEAK 25(10Q23.31) MUTATED" 
                     TCGA-CG-4449                      TCGA-CG-4455 
"DEL PEAK 25(10Q23.31) WILD-TYPE"   "DEL PEAK 25(10Q23.31) MUTATED" 
                     TCGA-CG-4460                      TCGA-CG-4462 
  "DEL PEAK 25(10Q23.31) MUTATED" "DEL PEAK 25(10Q23.31) WILD-TYPE" 
                     TCGA-CG-4465                      TCGA-CG-4466 
"DEL PEAK 25(10Q23.31) WILD-TYPE"   "DEL PEAK 25(10Q23.31) MUTATED" 
                     TCGA-CG-4469                      TCGA-CG-4472 
"DEL PEAK 25(10Q23.31) WILD-TYPE" "DEL PEAK 25(10Q23.31) WILD-TYPE" 
                     TCGA-CG-4474                      TCGA-CG-4477 
"DEL PEAK 25(10Q23.31) WILD-TYPE" "DEL PEAK 25(10Q23.31) WILD-TYPE" 
                     TCGA-CG-5716                      TCGA-CG-5717 
"DEL PEAK 25(10Q23.31) WILD-TYPE" "DEL PEAK 25(10Q23.31) WILD-TYPE" 
                     TCGA-CG-5718                      TCGA-CG-5719 
  "DEL PEAK 25(10Q23.31) MUTATED" "DEL PEAK 25(10Q23.31) WILD-TYPE" 
                     TCGA-CG-5720                      TCGA-CG-5721 
"DEL PEAK 25(10Q23.31) WILD-TYPE" "DEL PEAK 25(10Q23.31) WILD-TYPE" 
                     TCGA-CG-5722                      TCGA-CG-5723 
"DEL PEAK 25(10Q23.31) WILD-TYPE" "DEL PEAK 25(10Q23.31) WILD-TYPE" 
                     TCGA-CG-5724                      TCGA-CG-5725 
"DEL PEAK 25(10Q23.31) WILD-TYPE"   "DEL PEAK 25(10Q23.31) MUTATED" 
                     TCGA-CG-5726                      TCGA-CG-5727 
"DEL PEAK 25(10Q23.31) WILD-TYPE" "DEL PEAK 25(10Q23.31) WILD-TYPE" 
                     TCGA-CG-5728                      TCGA-CG-5730 
"DEL PEAK 25(10Q23.31) WILD-TYPE"   "DEL PEAK 25(10Q23.31) MUTATED" 
                     TCGA-CG-5732                      TCGA-CG-5733 
  "DEL PEAK 25(10Q23.31) MUTATED" "DEL PEAK 25(10Q23.31) WILD-TYPE" 
                     TCGA-CG-5734                      TCGA-D7-5577 
"DEL PEAK 25(10Q23.31) WILD-TYPE"   "DEL PEAK 25(10Q23.31) MUTATED" 
                     TCGA-D7-5578                      TCGA-D7-5579 
"DEL PEAK 25(10Q23.31) WILD-TYPE" "DEL PEAK 25(10Q23.31) WILD-TYPE" 
                     TCGA-D7-6518                      TCGA-D7-6519 
  "DEL PEAK 25(10Q23.31) MUTATED" "DEL PEAK 25(10Q23.31) WILD-TYPE" 
                     TCGA-D7-6520                      TCGA-D7-6521 
"DEL PEAK 25(10Q23.31) WILD-TYPE"   "DEL PEAK 25(10Q23.31) MUTATED" 
                     TCGA-D7-6522                      TCGA-D7-6524 
"DEL PEAK 25(10Q23.31) WILD-TYPE" "DEL PEAK 25(10Q23.31) WILD-TYPE" 
                     TCGA-D7-6525                      TCGA-D7-6526 
"DEL PEAK 25(10Q23.31) WILD-TYPE" "DEL PEAK 25(10Q23.31) WILD-TYPE" 
                     TCGA-D7-6527                      TCGA-D7-6528 
  "DEL PEAK 25(10Q23.31) MUTATED"   "DEL PEAK 25(10Q23.31) MUTATED" 
                     TCGA-D7-6815                      TCGA-D7-6817 
  "DEL PEAK 25(10Q23.31) MUTATED"   "DEL PEAK 25(10Q23.31) MUTATED" 
                     TCGA-D7-6818                      TCGA-D7-6820 
"DEL PEAK 25(10Q23.31) WILD-TYPE" "DEL PEAK 25(10Q23.31) WILD-TYPE" 
                     TCGA-D7-6822                      TCGA-EQ-5647 
"DEL PEAK 25(10Q23.31) WILD-TYPE" "DEL PEAK 25(10Q23.31) WILD-TYPE" 
                     TCGA-EQ-8122                      TCGA-F1-6177 
"DEL PEAK 25(10Q23.31) WILD-TYPE" "DEL PEAK 25(10Q23.31) WILD-TYPE" 
                     TCGA-F1-6874                      TCGA-F1-6875 
"DEL PEAK 25(10Q23.31) WILD-TYPE" "DEL PEAK 25(10Q23.31) WILD-TYPE" 
                     TCGA-FP-7735                      TCGA-FP-7829 
  "DEL PEAK 25(10Q23.31) MUTATED"   "DEL PEAK 25(10Q23.31) MUTATED" 
                     TCGA-FP-7916                      TCGA-FP-7998 
"DEL PEAK 25(10Q23.31) WILD-TYPE" "DEL PEAK 25(10Q23.31) WILD-TYPE" 
                     TCGA-HJ-7597                      TCGA-IN-7806 
"DEL PEAK 25(10Q23.31) WILD-TYPE" "DEL PEAK 25(10Q23.31) WILD-TYPE" 
                     TCGA-IN-7808                      TCGA-IP-7968 
"DEL PEAK 25(10Q23.31) WILD-TYPE" "DEL PEAK 25(10Q23.31) WILD-TYPE" 
[1] "hr=" "1.8"
D51V2, continuous
D51V3, binary
[1] "tbl2"
                                 cls
clus                              [,1] [,2]
  DEL PEAK 25(10Q23.31) MUTATED     12   25
  DEL PEAK 25(10Q23.31) WILD-TYPE   53   71
        clus
vv       DEL PEAK 25(10Q23.31) MUTATED DEL PEAK 25(10Q23.31) WILD-TYPE
  FEMALE                            12                              53
  MALE                              25                              71
D51V4, multiclass
D51V5, multiclass
    clus
vv   DEL PEAK 25(10Q23.31) MUTATED DEL PEAK 25(10Q23.31) WILD-TYPE
  T1                             1                               5
  T2                            21                              32
  T3                             8                              51
  T4                             2                              31
D51V6, multiclass
    clus
vv   DEL PEAK 25(10Q23.31) MUTATED DEL PEAK 25(10Q23.31) WILD-TYPE
  N0                            10                              40
  N1                            14                              43
  N2                             5                              19
  N3                             5                              14
D51V7, multiclass
    clus
vv   DEL PEAK 25(10Q23.31) MUTATED DEL PEAK 25(10Q23.31) WILD-TYPE
  M0                            33                              99
  M1                             3                              15
  MX                             1                              10
D51V8, multiclass
     clus
vv    DEL PEAK 25(10Q23.31) MUTATED DEL PEAK 25(10Q23.31) WILD-TYPE
  I                               8                              17
  II                              8                              35
  III                            10                              38
  IV                              6                              23
D51V9, binary
[1] "tbl2"
                                 cls
clus                              [,1] [,2]
  DEL PEAK 25(10Q23.31) MUTATED     36    1
  DEL PEAK 25(10Q23.31) WILD-TYPE  120    4
     clus
vv    DEL PEAK 25(10Q23.31) MUTATED DEL PEAK 25(10Q23.31) WILD-TYPE
  NO                              1                               4
  YES                            36                             120

Clustering(52) Variable = Del Peak 26(11p15.5) mutation analysis
D52V1, survival
                    TCGA-B7-5816                     TCGA-B7-5818 
"DEL PEAK 26(11P15.5) WILD-TYPE" "DEL PEAK 26(11P15.5) WILD-TYPE" 
                    TCGA-BR-6452                     TCGA-BR-6455 
"DEL PEAK 26(11P15.5) WILD-TYPE" "DEL PEAK 26(11P15.5) WILD-TYPE" 
                    TCGA-BR-6457                     TCGA-BR-6458 
"DEL PEAK 26(11P15.5) WILD-TYPE" "DEL PEAK 26(11P15.5) WILD-TYPE" 
                    TCGA-BR-6563                     TCGA-BR-6564 
"DEL PEAK 26(11P15.5) WILD-TYPE"   "DEL PEAK 26(11P15.5) MUTATED" 
                    TCGA-BR-6565                     TCGA-BR-6566 
"DEL PEAK 26(11P15.5) WILD-TYPE" "DEL PEAK 26(11P15.5) WILD-TYPE" 
                    TCGA-BR-6705                     TCGA-BR-6706 
"DEL PEAK 26(11P15.5) WILD-TYPE" "DEL PEAK 26(11P15.5) WILD-TYPE" 
                    TCGA-BR-6707                     TCGA-BR-6709 
"DEL PEAK 26(11P15.5) WILD-TYPE" "DEL PEAK 26(11P15.5) WILD-TYPE" 
                    TCGA-BR-6710                     TCGA-BR-6801 
"DEL PEAK 26(11P15.5) WILD-TYPE" "DEL PEAK 26(11P15.5) WILD-TYPE" 
                    TCGA-BR-6802                     TCGA-BR-6803 
"DEL PEAK 26(11P15.5) WILD-TYPE" "DEL PEAK 26(11P15.5) WILD-TYPE" 
                    TCGA-BR-6852                     TCGA-BR-7196 
"DEL PEAK 26(11P15.5) WILD-TYPE" "DEL PEAK 26(11P15.5) WILD-TYPE" 
                    TCGA-BR-7197                     TCGA-BR-7703 
"DEL PEAK 26(11P15.5) WILD-TYPE"   "DEL PEAK 26(11P15.5) MUTATED" 
                    TCGA-BR-7704                     TCGA-BR-7707 
"DEL PEAK 26(11P15.5) WILD-TYPE" "DEL PEAK 26(11P15.5) WILD-TYPE" 
                    TCGA-BR-7715                     TCGA-BR-7716 
"DEL PEAK 26(11P15.5) WILD-TYPE"   "DEL PEAK 26(11P15.5) MUTATED" 
                    TCGA-BR-7717                     TCGA-BR-7722 
"DEL PEAK 26(11P15.5) WILD-TYPE" "DEL PEAK 26(11P15.5) WILD-TYPE" 
                    TCGA-BR-7723                     TCGA-BR-7851 
  "DEL PEAK 26(11P15.5) MUTATED" "DEL PEAK 26(11P15.5) WILD-TYPE" 
                    TCGA-BR-7901                     TCGA-BR-7957 
"DEL PEAK 26(11P15.5) WILD-TYPE" "DEL PEAK 26(11P15.5) WILD-TYPE" 
                    TCGA-BR-7958                     TCGA-BR-7959 
"DEL PEAK 26(11P15.5) WILD-TYPE" "DEL PEAK 26(11P15.5) WILD-TYPE" 
                    TCGA-BR-8059                     TCGA-BR-8060 
"DEL PEAK 26(11P15.5) WILD-TYPE" "DEL PEAK 26(11P15.5) WILD-TYPE" 
                    TCGA-BR-8077                     TCGA-BR-8078 
"DEL PEAK 26(11P15.5) WILD-TYPE" "DEL PEAK 26(11P15.5) WILD-TYPE" 
                    TCGA-BR-8080                     TCGA-BR-8081 
"DEL PEAK 26(11P15.5) WILD-TYPE" "DEL PEAK 26(11P15.5) WILD-TYPE" 
                    TCGA-BR-8284                     TCGA-BR-8285 
"DEL PEAK 26(11P15.5) WILD-TYPE" "DEL PEAK 26(11P15.5) WILD-TYPE" 
                    TCGA-BR-8286                     TCGA-BR-8289 
"DEL PEAK 26(11P15.5) WILD-TYPE" "DEL PEAK 26(11P15.5) WILD-TYPE" 
                    TCGA-BR-8291                     TCGA-BR-8295 
"DEL PEAK 26(11P15.5) WILD-TYPE" "DEL PEAK 26(11P15.5) WILD-TYPE" 
                    TCGA-BR-8296                     TCGA-BR-8297 
"DEL PEAK 26(11P15.5) WILD-TYPE" "DEL PEAK 26(11P15.5) WILD-TYPE" 
                    TCGA-CD-5798                     TCGA-CD-5799 
"DEL PEAK 26(11P15.5) WILD-TYPE"   "DEL PEAK 26(11P15.5) MUTATED" 
                    TCGA-CD-5800                     TCGA-CD-5801 
  "DEL PEAK 26(11P15.5) MUTATED" "DEL PEAK 26(11P15.5) WILD-TYPE" 
                    TCGA-CD-5802                     TCGA-CD-5803 
  "DEL PEAK 26(11P15.5) MUTATED" "DEL PEAK 26(11P15.5) WILD-TYPE" 
                    TCGA-CG-4300                     TCGA-CG-4301 
"DEL PEAK 26(11P15.5) WILD-TYPE" "DEL PEAK 26(11P15.5) WILD-TYPE" 
                    TCGA-CG-4304                     TCGA-CG-4305 
  "DEL PEAK 26(11P15.5) MUTATED" "DEL PEAK 26(11P15.5) WILD-TYPE" 
                    TCGA-CG-4306                     TCGA-CG-4436 
"DEL PEAK 26(11P15.5) WILD-TYPE" "DEL PEAK 26(11P15.5) WILD-TYPE" 
                    TCGA-CG-4437                     TCGA-CG-4438 
"DEL PEAK 26(11P15.5) WILD-TYPE" "DEL PEAK 26(11P15.5) WILD-TYPE" 
                    TCGA-CG-4440                     TCGA-CG-4441 
"DEL PEAK 26(11P15.5) WILD-TYPE" "DEL PEAK 26(11P15.5) WILD-TYPE" 
                    TCGA-CG-4443                     TCGA-CG-4444 
  "DEL PEAK 26(11P15.5) MUTATED"   "DEL PEAK 26(11P15.5) MUTATED" 
                    TCGA-CG-4449                     TCGA-CG-4455 
  "DEL PEAK 26(11P15.5) MUTATED" "DEL PEAK 26(11P15.5) WILD-TYPE" 
                    TCGA-CG-4460                     TCGA-CG-4462 
  "DEL PEAK 26(11P15.5) MUTATED" "DEL PEAK 26(11P15.5) WILD-TYPE" 
                    TCGA-CG-4465                     TCGA-CG-4466 
"DEL PEAK 26(11P15.5) WILD-TYPE"   "DEL PEAK 26(11P15.5) MUTATED" 
                    TCGA-CG-4469                     TCGA-CG-4472 
"DEL PEAK 26(11P15.5) WILD-TYPE" "DEL PEAK 26(11P15.5) WILD-TYPE" 
                    TCGA-CG-4474                     TCGA-CG-4477 
"DEL PEAK 26(11P15.5) WILD-TYPE" "DEL PEAK 26(11P15.5) WILD-TYPE" 
                    TCGA-CG-5716                     TCGA-CG-5717 
"DEL PEAK 26(11P15.5) WILD-TYPE"   "DEL PEAK 26(11P15.5) MUTATED" 
                    TCGA-CG-5718                     TCGA-CG-5719 
"DEL PEAK 26(11P15.5) WILD-TYPE" "DEL PEAK 26(11P15.5) WILD-TYPE" 
                    TCGA-CG-5720                     TCGA-CG-5721 
"DEL PEAK 26(11P15.5) WILD-TYPE" "DEL PEAK 26(11P15.5) WILD-TYPE" 
                    TCGA-CG-5722                     TCGA-CG-5723 
"DEL PEAK 26(11P15.5) WILD-TYPE" "DEL PEAK 26(11P15.5) WILD-TYPE" 
                    TCGA-CG-5724                     TCGA-CG-5725 
  "DEL PEAK 26(11P15.5) MUTATED"   "DEL PEAK 26(11P15.5) MUTATED" 
                    TCGA-CG-5726                     TCGA-CG-5727 
"DEL PEAK 26(11P15.5) WILD-TYPE" "DEL PEAK 26(11P15.5) WILD-TYPE" 
                    TCGA-CG-5728                     TCGA-CG-5730 
"DEL PEAK 26(11P15.5) WILD-TYPE"   "DEL PEAK 26(11P15.5) MUTATED" 
                    TCGA-CG-5732                     TCGA-CG-5733 
  "DEL PEAK 26(11P15.5) MUTATED" "DEL PEAK 26(11P15.5) WILD-TYPE" 
                    TCGA-CG-5734                     TCGA-D7-5577 
"DEL PEAK 26(11P15.5) WILD-TYPE" "DEL PEAK 26(11P15.5) WILD-TYPE" 
                    TCGA-D7-5578                     TCGA-D7-5579 
  "DEL PEAK 26(11P15.5) MUTATED"   "DEL PEAK 26(11P15.5) MUTATED" 
                    TCGA-D7-6518                     TCGA-D7-6519 
"DEL PEAK 26(11P15.5) WILD-TYPE"   "DEL PEAK 26(11P15.5) MUTATED" 
                    TCGA-D7-6520                     TCGA-D7-6521 
  "DEL PEAK 26(11P15.5) MUTATED" "DEL PEAK 26(11P15.5) WILD-TYPE" 
                    TCGA-D7-6522                     TCGA-D7-6524 
"DEL PEAK 26(11P15.5) WILD-TYPE" "DEL PEAK 26(11P15.5) WILD-TYPE" 
                    TCGA-D7-6525                     TCGA-D7-6526 
"DEL PEAK 26(11P15.5) WILD-TYPE" "DEL PEAK 26(11P15.5) WILD-TYPE" 
                    TCGA-D7-6527                     TCGA-D7-6528 
  "DEL PEAK 26(11P15.5) MUTATED"   "DEL PEAK 26(11P15.5) MUTATED" 
                    TCGA-D7-6815                     TCGA-D7-6817 
  "DEL PEAK 26(11P15.5) MUTATED" "DEL PEAK 26(11P15.5) WILD-TYPE" 
                    TCGA-D7-6818                     TCGA-D7-6820 
"DEL PEAK 26(11P15.5) WILD-TYPE" "DEL PEAK 26(11P15.5) WILD-TYPE" 
                    TCGA-D7-6822                     TCGA-EQ-5647 
"DEL PEAK 26(11P15.5) WILD-TYPE"   "DEL PEAK 26(11P15.5) MUTATED" 
                    TCGA-EQ-8122                     TCGA-F1-6177 
"DEL PEAK 26(11P15.5) WILD-TYPE" "DEL PEAK 26(11P15.5) WILD-TYPE" 
                    TCGA-F1-6874                     TCGA-F1-6875 
"DEL PEAK 26(11P15.5) WILD-TYPE" "DEL PEAK 26(11P15.5) WILD-TYPE" 
                    TCGA-FP-7735                     TCGA-FP-7829 
"DEL PEAK 26(11P15.5) WILD-TYPE" "DEL PEAK 26(11P15.5) WILD-TYPE" 
                    TCGA-FP-7916                     TCGA-FP-7998 
"DEL PEAK 26(11P15.5) WILD-TYPE" "DEL PEAK 26(11P15.5) WILD-TYPE" 
                    TCGA-HJ-7597                     TCGA-IN-7806 
  "DEL PEAK 26(11P15.5) MUTATED" "DEL PEAK 26(11P15.5) WILD-TYPE" 
                    TCGA-IN-7808                     TCGA-IP-7968 
"DEL PEAK 26(11P15.5) WILD-TYPE"   "DEL PEAK 26(11P15.5) MUTATED" 
                    TCGA-B7-5816                     TCGA-B7-5818 
"DEL PEAK 26(11P15.5) WILD-TYPE" "DEL PEAK 26(11P15.5) WILD-TYPE" 
                    TCGA-BR-6452                     TCGA-BR-6455 
"DEL PEAK 26(11P15.5) WILD-TYPE" "DEL PEAK 26(11P15.5) WILD-TYPE" 
                    TCGA-BR-6457                     TCGA-BR-6458 
"DEL PEAK 26(11P15.5) WILD-TYPE" "DEL PEAK 26(11P15.5) WILD-TYPE" 
                    TCGA-BR-6563                     TCGA-BR-6564 
"DEL PEAK 26(11P15.5) WILD-TYPE"   "DEL PEAK 26(11P15.5) MUTATED" 
                    TCGA-BR-6565                     TCGA-BR-6566 
"DEL PEAK 26(11P15.5) WILD-TYPE" "DEL PEAK 26(11P15.5) WILD-TYPE" 
                    TCGA-BR-6705                     TCGA-BR-6706 
"DEL PEAK 26(11P15.5) WILD-TYPE" "DEL PEAK 26(11P15.5) WILD-TYPE" 
                    TCGA-BR-6707                     TCGA-BR-6709 
"DEL PEAK 26(11P15.5) WILD-TYPE" "DEL PEAK 26(11P15.5) WILD-TYPE" 
                    TCGA-BR-6710                     TCGA-BR-6801 
"DEL PEAK 26(11P15.5) WILD-TYPE" "DEL PEAK 26(11P15.5) WILD-TYPE" 
                    TCGA-BR-6802                     TCGA-BR-6803 
"DEL PEAK 26(11P15.5) WILD-TYPE" "DEL PEAK 26(11P15.5) WILD-TYPE" 
                    TCGA-BR-6852                     TCGA-BR-7196 
"DEL PEAK 26(11P15.5) WILD-TYPE" "DEL PEAK 26(11P15.5) WILD-TYPE" 
                    TCGA-BR-7197                     TCGA-BR-7703 
"DEL PEAK 26(11P15.5) WILD-TYPE"   "DEL PEAK 26(11P15.5) MUTATED" 
                    TCGA-BR-7704                     TCGA-BR-7707 
"DEL PEAK 26(11P15.5) WILD-TYPE" "DEL PEAK 26(11P15.5) WILD-TYPE" 
                    TCGA-BR-7715                     TCGA-BR-7716 
"DEL PEAK 26(11P15.5) WILD-TYPE"   "DEL PEAK 26(11P15.5) MUTATED" 
                    TCGA-BR-7717                     TCGA-BR-7722 
"DEL PEAK 26(11P15.5) WILD-TYPE" "DEL PEAK 26(11P15.5) WILD-TYPE" 
                    TCGA-BR-7723                     TCGA-BR-7851 
  "DEL PEAK 26(11P15.5) MUTATED" "DEL PEAK 26(11P15.5) WILD-TYPE" 
                    TCGA-BR-7901                     TCGA-BR-7957 
"DEL PEAK 26(11P15.5) WILD-TYPE" "DEL PEAK 26(11P15.5) WILD-TYPE" 
                    TCGA-BR-7958                     TCGA-BR-7959 
"DEL PEAK 26(11P15.5) WILD-TYPE" "DEL PEAK 26(11P15.5) WILD-TYPE" 
                    TCGA-BR-8059                     TCGA-BR-8060 
"DEL PEAK 26(11P15.5) WILD-TYPE" "DEL PEAK 26(11P15.5) WILD-TYPE" 
                    TCGA-BR-8077                     TCGA-BR-8078 
"DEL PEAK 26(11P15.5) WILD-TYPE" "DEL PEAK 26(11P15.5) WILD-TYPE" 
                    TCGA-BR-8080                     TCGA-BR-8081 
"DEL PEAK 26(11P15.5) WILD-TYPE" "DEL PEAK 26(11P15.5) WILD-TYPE" 
                    TCGA-BR-8284                     TCGA-BR-8285 
"DEL PEAK 26(11P15.5) WILD-TYPE" "DEL PEAK 26(11P15.5) WILD-TYPE" 
                    TCGA-BR-8286                     TCGA-BR-8289 
"DEL PEAK 26(11P15.5) WILD-TYPE" "DEL PEAK 26(11P15.5) WILD-TYPE" 
                    TCGA-BR-8291                     TCGA-BR-8295 
"DEL PEAK 26(11P15.5) WILD-TYPE" "DEL PEAK 26(11P15.5) WILD-TYPE" 
                    TCGA-BR-8296                     TCGA-BR-8297 
"DEL PEAK 26(11P15.5) WILD-TYPE" "DEL PEAK 26(11P15.5) WILD-TYPE" 
                    TCGA-CD-5798                     TCGA-CD-5799 
"DEL PEAK 26(11P15.5) WILD-TYPE"   "DEL PEAK 26(11P15.5) MUTATED" 
                    TCGA-CD-5800                     TCGA-CD-5801 
  "DEL PEAK 26(11P15.5) MUTATED" "DEL PEAK 26(11P15.5) WILD-TYPE" 
                    TCGA-CD-5802                     TCGA-CD-5803 
  "DEL PEAK 26(11P15.5) MUTATED" "DEL PEAK 26(11P15.5) WILD-TYPE" 
                    TCGA-CG-4300                     TCGA-CG-4301 
"DEL PEAK 26(11P15.5) WILD-TYPE" "DEL PEAK 26(11P15.5) WILD-TYPE" 
                    TCGA-CG-4304                     TCGA-CG-4305 
  "DEL PEAK 26(11P15.5) MUTATED" "DEL PEAK 26(11P15.5) WILD-TYPE" 
                    TCGA-CG-4306                     TCGA-CG-4436 
"DEL PEAK 26(11P15.5) WILD-TYPE" "DEL PEAK 26(11P15.5) WILD-TYPE" 
                    TCGA-CG-4437                     TCGA-CG-4438 
"DEL PEAK 26(11P15.5) WILD-TYPE" "DEL PEAK 26(11P15.5) WILD-TYPE" 
                    TCGA-CG-4440                     TCGA-CG-4441 
"DEL PEAK 26(11P15.5) WILD-TYPE" "DEL PEAK 26(11P15.5) WILD-TYPE" 
                    TCGA-CG-4443                     TCGA-CG-4444 
  "DEL PEAK 26(11P15.5) MUTATED"   "DEL PEAK 26(11P15.5) MUTATED" 
                    TCGA-CG-4449                     TCGA-CG-4455 
  "DEL PEAK 26(11P15.5) MUTATED" "DEL PEAK 26(11P15.5) WILD-TYPE" 
                    TCGA-CG-4460                     TCGA-CG-4462 
  "DEL PEAK 26(11P15.5) MUTATED" "DEL PEAK 26(11P15.5) WILD-TYPE" 
                    TCGA-CG-4465                     TCGA-CG-4466 
"DEL PEAK 26(11P15.5) WILD-TYPE"   "DEL PEAK 26(11P15.5) MUTATED" 
                    TCGA-CG-4469                     TCGA-CG-4472 
"DEL PEAK 26(11P15.5) WILD-TYPE" "DEL PEAK 26(11P15.5) WILD-TYPE" 
                    TCGA-CG-4474                     TCGA-CG-4477 
"DEL PEAK 26(11P15.5) WILD-TYPE" "DEL PEAK 26(11P15.5) WILD-TYPE" 
                    TCGA-CG-5716                     TCGA-CG-5717 
"DEL PEAK 26(11P15.5) WILD-TYPE"   "DEL PEAK 26(11P15.5) MUTATED" 
                    TCGA-CG-5718                     TCGA-CG-5719 
"DEL PEAK 26(11P15.5) WILD-TYPE" "DEL PEAK 26(11P15.5) WILD-TYPE" 
                    TCGA-CG-5720                     TCGA-CG-5721 
"DEL PEAK 26(11P15.5) WILD-TYPE" "DEL PEAK 26(11P15.5) WILD-TYPE" 
                    TCGA-CG-5722                     TCGA-CG-5723 
"DEL PEAK 26(11P15.5) WILD-TYPE" "DEL PEAK 26(11P15.5) WILD-TYPE" 
                    TCGA-CG-5724                     TCGA-CG-5725 
  "DEL PEAK 26(11P15.5) MUTATED"   "DEL PEAK 26(11P15.5) MUTATED" 
                    TCGA-CG-5726                     TCGA-CG-5727 
"DEL PEAK 26(11P15.5) WILD-TYPE" "DEL PEAK 26(11P15.5) WILD-TYPE" 
                    TCGA-CG-5728                     TCGA-CG-5730 
"DEL PEAK 26(11P15.5) WILD-TYPE"   "DEL PEAK 26(11P15.5) MUTATED" 
                    TCGA-CG-5732                     TCGA-CG-5733 
  "DEL PEAK 26(11P15.5) MUTATED" "DEL PEAK 26(11P15.5) WILD-TYPE" 
                    TCGA-CG-5734                     TCGA-D7-5577 
"DEL PEAK 26(11P15.5) WILD-TYPE" "DEL PEAK 26(11P15.5) WILD-TYPE" 
                    TCGA-D7-5578                     TCGA-D7-5579 
  "DEL PEAK 26(11P15.5) MUTATED"   "DEL PEAK 26(11P15.5) MUTATED" 
                    TCGA-D7-6518                     TCGA-D7-6519 
"DEL PEAK 26(11P15.5) WILD-TYPE"   "DEL PEAK 26(11P15.5) MUTATED" 
                    TCGA-D7-6520                     TCGA-D7-6521 
  "DEL PEAK 26(11P15.5) MUTATED" "DEL PEAK 26(11P15.5) WILD-TYPE" 
                    TCGA-D7-6522                     TCGA-D7-6524 
"DEL PEAK 26(11P15.5) WILD-TYPE" "DEL PEAK 26(11P15.5) WILD-TYPE" 
                    TCGA-D7-6525                     TCGA-D7-6526 
"DEL PEAK 26(11P15.5) WILD-TYPE" "DEL PEAK 26(11P15.5) WILD-TYPE" 
                    TCGA-D7-6527                     TCGA-D7-6528 
  "DEL PEAK 26(11P15.5) MUTATED"   "DEL PEAK 26(11P15.5) MUTATED" 
                    TCGA-D7-6815                     TCGA-D7-6817 
  "DEL PEAK 26(11P15.5) MUTATED" "DEL PEAK 26(11P15.5) WILD-TYPE" 
                    TCGA-D7-6818                     TCGA-D7-6820 
"DEL PEAK 26(11P15.5) WILD-TYPE" "DEL PEAK 26(11P15.5) WILD-TYPE" 
                    TCGA-D7-6822                     TCGA-EQ-5647 
"DEL PEAK 26(11P15.5) WILD-TYPE"   "DEL PEAK 26(11P15.5) MUTATED" 
                    TCGA-EQ-8122                     TCGA-F1-6177 
"DEL PEAK 26(11P15.5) WILD-TYPE" "DEL PEAK 26(11P15.5) WILD-TYPE" 
                    TCGA-F1-6874                     TCGA-F1-6875 
"DEL PEAK 26(11P15.5) WILD-TYPE" "DEL PEAK 26(11P15.5) WILD-TYPE" 
                    TCGA-FP-7735                     TCGA-FP-7829 
"DEL PEAK 26(11P15.5) WILD-TYPE" "DEL PEAK 26(11P15.5) WILD-TYPE" 
                    TCGA-FP-7916                     TCGA-FP-7998 
"DEL PEAK 26(11P15.5) WILD-TYPE" "DEL PEAK 26(11P15.5) WILD-TYPE" 
                    TCGA-HJ-7597                     TCGA-IN-7806 
  "DEL PEAK 26(11P15.5) MUTATED" "DEL PEAK 26(11P15.5) WILD-TYPE" 
                    TCGA-IN-7808                     TCGA-IP-7968 
"DEL PEAK 26(11P15.5) WILD-TYPE"   "DEL PEAK 26(11P15.5) MUTATED" 
                    TCGA-B7-5816                     TCGA-B7-5818 
"DEL PEAK 26(11P15.5) WILD-TYPE" "DEL PEAK 26(11P15.5) WILD-TYPE" 
                    TCGA-BR-6452                     TCGA-BR-6455 
"DEL PEAK 26(11P15.5) WILD-TYPE" "DEL PEAK 26(11P15.5) WILD-TYPE" 
                    TCGA-BR-6457                     TCGA-BR-6458 
"DEL PEAK 26(11P15.5) WILD-TYPE" "DEL PEAK 26(11P15.5) WILD-TYPE" 
                    TCGA-BR-6563                     TCGA-BR-6564 
"DEL PEAK 26(11P15.5) WILD-TYPE"   "DEL PEAK 26(11P15.5) MUTATED" 
                    TCGA-BR-6565                     TCGA-BR-6566 
"DEL PEAK 26(11P15.5) WILD-TYPE" "DEL PEAK 26(11P15.5) WILD-TYPE" 
                    TCGA-BR-6705                     TCGA-BR-6706 
"DEL PEAK 26(11P15.5) WILD-TYPE" "DEL PEAK 26(11P15.5) WILD-TYPE" 
                    TCGA-BR-6707                     TCGA-BR-6709 
"DEL PEAK 26(11P15.5) WILD-TYPE" "DEL PEAK 26(11P15.5) WILD-TYPE" 
                    TCGA-BR-6710                     TCGA-BR-6801 
"DEL PEAK 26(11P15.5) WILD-TYPE" "DEL PEAK 26(11P15.5) WILD-TYPE" 
                    TCGA-BR-6802                     TCGA-BR-6803 
"DEL PEAK 26(11P15.5) WILD-TYPE" "DEL PEAK 26(11P15.5) WILD-TYPE" 
                    TCGA-BR-6852                     TCGA-BR-7196 
"DEL PEAK 26(11P15.5) WILD-TYPE" "DEL PEAK 26(11P15.5) WILD-TYPE" 
                    TCGA-BR-7197                     TCGA-BR-7703 
"DEL PEAK 26(11P15.5) WILD-TYPE"   "DEL PEAK 26(11P15.5) MUTATED" 
                    TCGA-BR-7704                     TCGA-BR-7707 
"DEL PEAK 26(11P15.5) WILD-TYPE" "DEL PEAK 26(11P15.5) WILD-TYPE" 
                    TCGA-BR-7715                     TCGA-BR-7716 
"DEL PEAK 26(11P15.5) WILD-TYPE"   "DEL PEAK 26(11P15.5) MUTATED" 
                    TCGA-BR-7717                     TCGA-BR-7722 
"DEL PEAK 26(11P15.5) WILD-TYPE" "DEL PEAK 26(11P15.5) WILD-TYPE" 
                    TCGA-BR-7723                     TCGA-BR-7851 
  "DEL PEAK 26(11P15.5) MUTATED" "DEL PEAK 26(11P15.5) WILD-TYPE" 
                    TCGA-BR-7901                     TCGA-BR-7957 
"DEL PEAK 26(11P15.5) WILD-TYPE" "DEL PEAK 26(11P15.5) WILD-TYPE" 
                    TCGA-BR-7958                     TCGA-BR-7959 
"DEL PEAK 26(11P15.5) WILD-TYPE" "DEL PEAK 26(11P15.5) WILD-TYPE" 
                    TCGA-BR-8059                     TCGA-BR-8060 
"DEL PEAK 26(11P15.5) WILD-TYPE" "DEL PEAK 26(11P15.5) WILD-TYPE" 
                    TCGA-BR-8077                     TCGA-BR-8078 
"DEL PEAK 26(11P15.5) WILD-TYPE" "DEL PEAK 26(11P15.5) WILD-TYPE" 
                    TCGA-BR-8080                     TCGA-BR-8081 
"DEL PEAK 26(11P15.5) WILD-TYPE" "DEL PEAK 26(11P15.5) WILD-TYPE" 
                    TCGA-BR-8284                     TCGA-BR-8285 
"DEL PEAK 26(11P15.5) WILD-TYPE" "DEL PEAK 26(11P15.5) WILD-TYPE" 
                    TCGA-BR-8286                     TCGA-BR-8289 
"DEL PEAK 26(11P15.5) WILD-TYPE" "DEL PEAK 26(11P15.5) WILD-TYPE" 
                    TCGA-BR-8291                     TCGA-BR-8295 
"DEL PEAK 26(11P15.5) WILD-TYPE" "DEL PEAK 26(11P15.5) WILD-TYPE" 
                    TCGA-BR-8296                     TCGA-BR-8297 
"DEL PEAK 26(11P15.5) WILD-TYPE" "DEL PEAK 26(11P15.5) WILD-TYPE" 
                    TCGA-CD-5798                     TCGA-CD-5799 
"DEL PEAK 26(11P15.5) WILD-TYPE"   "DEL PEAK 26(11P15.5) MUTATED" 
                    TCGA-CD-5800                     TCGA-CD-5801 
  "DEL PEAK 26(11P15.5) MUTATED" "DEL PEAK 26(11P15.5) WILD-TYPE" 
                    TCGA-CD-5802                     TCGA-CD-5803 
  "DEL PEAK 26(11P15.5) MUTATED" "DEL PEAK 26(11P15.5) WILD-TYPE" 
                    TCGA-CG-4300                     TCGA-CG-4301 
"DEL PEAK 26(11P15.5) WILD-TYPE" "DEL PEAK 26(11P15.5) WILD-TYPE" 
                    TCGA-CG-4304                     TCGA-CG-4305 
  "DEL PEAK 26(11P15.5) MUTATED" "DEL PEAK 26(11P15.5) WILD-TYPE" 
                    TCGA-CG-4306                     TCGA-CG-4436 
"DEL PEAK 26(11P15.5) WILD-TYPE" "DEL PEAK 26(11P15.5) WILD-TYPE" 
                    TCGA-CG-4437                     TCGA-CG-4438 
"DEL PEAK 26(11P15.5) WILD-TYPE" "DEL PEAK 26(11P15.5) WILD-TYPE" 
                    TCGA-CG-4440                     TCGA-CG-4441 
"DEL PEAK 26(11P15.5) WILD-TYPE" "DEL PEAK 26(11P15.5) WILD-TYPE" 
                    TCGA-CG-4443                     TCGA-CG-4444 
  "DEL PEAK 26(11P15.5) MUTATED"   "DEL PEAK 26(11P15.5) MUTATED" 
                    TCGA-CG-4449                     TCGA-CG-4455 
  "DEL PEAK 26(11P15.5) MUTATED" "DEL PEAK 26(11P15.5) WILD-TYPE" 
                    TCGA-CG-4460                     TCGA-CG-4462 
  "DEL PEAK 26(11P15.5) MUTATED" "DEL PEAK 26(11P15.5) WILD-TYPE" 
                    TCGA-CG-4465                     TCGA-CG-4466 
"DEL PEAK 26(11P15.5) WILD-TYPE"   "DEL PEAK 26(11P15.5) MUTATED" 
                    TCGA-CG-4469                     TCGA-CG-4472 
"DEL PEAK 26(11P15.5) WILD-TYPE" "DEL PEAK 26(11P15.5) WILD-TYPE" 
                    TCGA-CG-4474                     TCGA-CG-4477 
"DEL PEAK 26(11P15.5) WILD-TYPE" "DEL PEAK 26(11P15.5) WILD-TYPE" 
                    TCGA-CG-5716                     TCGA-CG-5717 
"DEL PEAK 26(11P15.5) WILD-TYPE"   "DEL PEAK 26(11P15.5) MUTATED" 
                    TCGA-CG-5718                     TCGA-CG-5719 
"DEL PEAK 26(11P15.5) WILD-TYPE" "DEL PEAK 26(11P15.5) WILD-TYPE" 
                    TCGA-CG-5720                     TCGA-CG-5721 
"DEL PEAK 26(11P15.5) WILD-TYPE" "DEL PEAK 26(11P15.5) WILD-TYPE" 
                    TCGA-CG-5722                     TCGA-CG-5723 
"DEL PEAK 26(11P15.5) WILD-TYPE" "DEL PEAK 26(11P15.5) WILD-TYPE" 
                    TCGA-CG-5724                     TCGA-CG-5725 
  "DEL PEAK 26(11P15.5) MUTATED"   "DEL PEAK 26(11P15.5) MUTATED" 
                    TCGA-CG-5726                     TCGA-CG-5727 
"DEL PEAK 26(11P15.5) WILD-TYPE" "DEL PEAK 26(11P15.5) WILD-TYPE" 
                    TCGA-CG-5728                     TCGA-CG-5730 
"DEL PEAK 26(11P15.5) WILD-TYPE"   "DEL PEAK 26(11P15.5) MUTATED" 
                    TCGA-CG-5732                     TCGA-CG-5733 
  "DEL PEAK 26(11P15.5) MUTATED" "DEL PEAK 26(11P15.5) WILD-TYPE" 
                    TCGA-CG-5734                     TCGA-D7-5577 
"DEL PEAK 26(11P15.5) WILD-TYPE" "DEL PEAK 26(11P15.5) WILD-TYPE" 
                    TCGA-D7-5578                     TCGA-D7-5579 
  "DEL PEAK 26(11P15.5) MUTATED"   "DEL PEAK 26(11P15.5) MUTATED" 
                    TCGA-D7-6518                     TCGA-D7-6519 
"DEL PEAK 26(11P15.5) WILD-TYPE"   "DEL PEAK 26(11P15.5) MUTATED" 
                    TCGA-D7-6520                     TCGA-D7-6521 
  "DEL PEAK 26(11P15.5) MUTATED" "DEL PEAK 26(11P15.5) WILD-TYPE" 
                    TCGA-D7-6522                     TCGA-D7-6524 
"DEL PEAK 26(11P15.5) WILD-TYPE" "DEL PEAK 26(11P15.5) WILD-TYPE" 
                    TCGA-D7-6525                     TCGA-D7-6526 
"DEL PEAK 26(11P15.5) WILD-TYPE" "DEL PEAK 26(11P15.5) WILD-TYPE" 
                    TCGA-D7-6527                     TCGA-D7-6528 
  "DEL PEAK 26(11P15.5) MUTATED"   "DEL PEAK 26(11P15.5) MUTATED" 
                    TCGA-D7-6815                     TCGA-D7-6817 
  "DEL PEAK 26(11P15.5) MUTATED" "DEL PEAK 26(11P15.5) WILD-TYPE" 
                    TCGA-D7-6818                     TCGA-D7-6820 
"DEL PEAK 26(11P15.5) WILD-TYPE" "DEL PEAK 26(11P15.5) WILD-TYPE" 
                    TCGA-D7-6822                     TCGA-EQ-5647 
"DEL PEAK 26(11P15.5) WILD-TYPE"   "DEL PEAK 26(11P15.5) MUTATED" 
                    TCGA-EQ-8122                     TCGA-F1-6177 
"DEL PEAK 26(11P15.5) WILD-TYPE" "DEL PEAK 26(11P15.5) WILD-TYPE" 
                    TCGA-F1-6874                     TCGA-F1-6875 
"DEL PEAK 26(11P15.5) WILD-TYPE" "DEL PEAK 26(11P15.5) WILD-TYPE" 
                    TCGA-FP-7735                     TCGA-FP-7829 
"DEL PEAK 26(11P15.5) WILD-TYPE" "DEL PEAK 26(11P15.5) WILD-TYPE" 
                    TCGA-FP-7916                     TCGA-FP-7998 
"DEL PEAK 26(11P15.5) WILD-TYPE" "DEL PEAK 26(11P15.5) WILD-TYPE" 
                    TCGA-HJ-7597                     TCGA-IN-7806 
  "DEL PEAK 26(11P15.5) MUTATED" "DEL PEAK 26(11P15.5) WILD-TYPE" 
                    TCGA-IN-7808                     TCGA-IP-7968 
"DEL PEAK 26(11P15.5) WILD-TYPE"   "DEL PEAK 26(11P15.5) MUTATED" 
[1] "hr=" "1.1"
D52V2, continuous
D52V3, binary
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  DEL PEAK 26(11P15.5) MUTATED     14   23
  DEL PEAK 26(11P15.5) WILD-TYPE   51   73
        clus
vv       DEL PEAK 26(11P15.5) MUTATED DEL PEAK 26(11P15.5) WILD-TYPE
  FEMALE                           14                             51
  MALE                             23                             73
D52V4, multiclass
D52V5, multiclass
    clus
vv   DEL PEAK 26(11P15.5) MUTATED DEL PEAK 26(11P15.5) WILD-TYPE
  T1                            2                              4
  T2                           18                             35
  T3                           11                             48
  T4                            3                             30
D52V6, multiclass
    clus
vv   DEL PEAK 26(11P15.5) MUTATED DEL PEAK 26(11P15.5) WILD-TYPE
  N0                            9                             41
  N1                           15                             42
  N2                            7                             17
  N3                            4                             15
D52V7, multiclass
    clus
vv   DEL PEAK 26(11P15.5) MUTATED DEL PEAK 26(11P15.5) WILD-TYPE
  M0                           30                            102
  M1                            4                             14
  MX                            3                              8
D52V8, multiclass
     clus
vv    DEL PEAK 26(11P15.5) MUTATED DEL PEAK 26(11P15.5) WILD-TYPE
  I                              7                             18
  II                            10                             33
  III                            9                             39
  IV                             7                             22
D52V9, binary
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  DEL PEAK 26(11P15.5) MUTATED     35    2
  DEL PEAK 26(11P15.5) WILD-TYPE  121    3
     clus
vv    DEL PEAK 26(11P15.5) MUTATED DEL PEAK 26(11P15.5) WILD-TYPE
  NO                             2                              3
  YES                           35                            121

Clustering(53) Variable = Del Peak 27(11q23.2) mutation analysis
D53V1, survival
                    TCGA-B7-5816                     TCGA-B7-5818 
"DEL PEAK 27(11Q23.2) WILD-TYPE" "DEL PEAK 27(11Q23.2) WILD-TYPE" 
                    TCGA-BR-6452                     TCGA-BR-6455 
"DEL PEAK 27(11Q23.2) WILD-TYPE" "DEL PEAK 27(11Q23.2) WILD-TYPE" 
                    TCGA-BR-6457                     TCGA-BR-6458 
"DEL PEAK 27(11Q23.2) WILD-TYPE" "DEL PEAK 27(11Q23.2) WILD-TYPE" 
                    TCGA-BR-6563                     TCGA-BR-6564 
"DEL PEAK 27(11Q23.2) WILD-TYPE"   "DEL PEAK 27(11Q23.2) MUTATED" 
                    TCGA-BR-6565                     TCGA-BR-6566 
"DEL PEAK 27(11Q23.2) WILD-TYPE" "DEL PEAK 27(11Q23.2) WILD-TYPE" 
                    TCGA-BR-6705                     TCGA-BR-6706 
"DEL PEAK 27(11Q23.2) WILD-TYPE" "DEL PEAK 27(11Q23.2) WILD-TYPE" 
                    TCGA-BR-6707                     TCGA-BR-6709 
"DEL PEAK 27(11Q23.2) WILD-TYPE"   "DEL PEAK 27(11Q23.2) MUTATED" 
                    TCGA-BR-6710                     TCGA-BR-6801 
"DEL PEAK 27(11Q23.2) WILD-TYPE" "DEL PEAK 27(11Q23.2) WILD-TYPE" 
                    TCGA-BR-6802                     TCGA-BR-6803 
"DEL PEAK 27(11Q23.2) WILD-TYPE" "DEL PEAK 27(11Q23.2) WILD-TYPE" 
                    TCGA-BR-6852                     TCGA-BR-7196 
"DEL PEAK 27(11Q23.2) WILD-TYPE" "DEL PEAK 27(11Q23.2) WILD-TYPE" 
                    TCGA-BR-7197                     TCGA-BR-7703 
"DEL PEAK 27(11Q23.2) WILD-TYPE" "DEL PEAK 27(11Q23.2) WILD-TYPE" 
                    TCGA-BR-7704                     TCGA-BR-7707 
"DEL PEAK 27(11Q23.2) WILD-TYPE" "DEL PEAK 27(11Q23.2) WILD-TYPE" 
                    TCGA-BR-7715                     TCGA-BR-7716 
"DEL PEAK 27(11Q23.2) WILD-TYPE" "DEL PEAK 27(11Q23.2) WILD-TYPE" 
                    TCGA-BR-7717                     TCGA-BR-7722 
"DEL PEAK 27(11Q23.2) WILD-TYPE"   "DEL PEAK 27(11Q23.2) MUTATED" 
                    TCGA-BR-7723                     TCGA-BR-7851 
"DEL PEAK 27(11Q23.2) WILD-TYPE" "DEL PEAK 27(11Q23.2) WILD-TYPE" 
                    TCGA-BR-7901                     TCGA-BR-7957 
"DEL PEAK 27(11Q23.2) WILD-TYPE" "DEL PEAK 27(11Q23.2) WILD-TYPE" 
                    TCGA-BR-7958                     TCGA-BR-7959 
"DEL PEAK 27(11Q23.2) WILD-TYPE" "DEL PEAK 27(11Q23.2) WILD-TYPE" 
                    TCGA-BR-8059                     TCGA-BR-8060 
"DEL PEAK 27(11Q23.2) WILD-TYPE" "DEL PEAK 27(11Q23.2) WILD-TYPE" 
                    TCGA-BR-8077                     TCGA-BR-8078 
"DEL PEAK 27(11Q23.2) WILD-TYPE" "DEL PEAK 27(11Q23.2) WILD-TYPE" 
                    TCGA-BR-8080                     TCGA-BR-8081 
"DEL PEAK 27(11Q23.2) WILD-TYPE" "DEL PEAK 27(11Q23.2) WILD-TYPE" 
                    TCGA-BR-8284                     TCGA-BR-8285 
"DEL PEAK 27(11Q23.2) WILD-TYPE" "DEL PEAK 27(11Q23.2) WILD-TYPE" 
                    TCGA-BR-8286                     TCGA-BR-8289 
"DEL PEAK 27(11Q23.2) WILD-TYPE" "DEL PEAK 27(11Q23.2) WILD-TYPE" 
                    TCGA-BR-8291                     TCGA-BR-8295 
"DEL PEAK 27(11Q23.2) WILD-TYPE" "DEL PEAK 27(11Q23.2) WILD-TYPE" 
                    TCGA-BR-8296                     TCGA-BR-8297 
"DEL PEAK 27(11Q23.2) WILD-TYPE" "DEL PEAK 27(11Q23.2) WILD-TYPE" 
                    TCGA-CD-5798                     TCGA-CD-5799 
"DEL PEAK 27(11Q23.2) WILD-TYPE"   "DEL PEAK 27(11Q23.2) MUTATED" 
                    TCGA-CD-5800                     TCGA-CD-5801 
  "DEL PEAK 27(11Q23.2) MUTATED" "DEL PEAK 27(11Q23.2) WILD-TYPE" 
                    TCGA-CD-5802                     TCGA-CD-5803 
  "DEL PEAK 27(11Q23.2) MUTATED" "DEL PEAK 27(11Q23.2) WILD-TYPE" 
                    TCGA-CG-4300                     TCGA-CG-4301 
"DEL PEAK 27(11Q23.2) WILD-TYPE"   "DEL PEAK 27(11Q23.2) MUTATED" 
                    TCGA-CG-4304                     TCGA-CG-4305 
  "DEL PEAK 27(11Q23.2) MUTATED" "DEL PEAK 27(11Q23.2) WILD-TYPE" 
                    TCGA-CG-4306                     TCGA-CG-4436 
"DEL PEAK 27(11Q23.2) WILD-TYPE" "DEL PEAK 27(11Q23.2) WILD-TYPE" 
                    TCGA-CG-4437                     TCGA-CG-4438 
  "DEL PEAK 27(11Q23.2) MUTATED" "DEL PEAK 27(11Q23.2) WILD-TYPE" 
                    TCGA-CG-4440                     TCGA-CG-4441 
"DEL PEAK 27(11Q23.2) WILD-TYPE"   "DEL PEAK 27(11Q23.2) MUTATED" 
                    TCGA-CG-4443                     TCGA-CG-4444 
  "DEL PEAK 27(11Q23.2) MUTATED" "DEL PEAK 27(11Q23.2) WILD-TYPE" 
                    TCGA-CG-4449                     TCGA-CG-4455 
"DEL PEAK 27(11Q23.2) WILD-TYPE"   "DEL PEAK 27(11Q23.2) MUTATED" 
                    TCGA-CG-4460                     TCGA-CG-4462 
"DEL PEAK 27(11Q23.2) WILD-TYPE" "DEL PEAK 27(11Q23.2) WILD-TYPE" 
                    TCGA-CG-4465                     TCGA-CG-4466 
"DEL PEAK 27(11Q23.2) WILD-TYPE" "DEL PEAK 27(11Q23.2) WILD-TYPE" 
                    TCGA-CG-4469                     TCGA-CG-4472 
"DEL PEAK 27(11Q23.2) WILD-TYPE" "DEL PEAK 27(11Q23.2) WILD-TYPE" 
                    TCGA-CG-4474                     TCGA-CG-4477 
  "DEL PEAK 27(11Q23.2) MUTATED" "DEL PEAK 27(11Q23.2) WILD-TYPE" 
                    TCGA-CG-5716                     TCGA-CG-5717 
"DEL PEAK 27(11Q23.2) WILD-TYPE" "DEL PEAK 27(11Q23.2) WILD-TYPE" 
                    TCGA-CG-5718                     TCGA-CG-5719 
  "DEL PEAK 27(11Q23.2) MUTATED"   "DEL PEAK 27(11Q23.2) MUTATED" 
                    TCGA-CG-5720                     TCGA-CG-5721 
"DEL PEAK 27(11Q23.2) WILD-TYPE" "DEL PEAK 27(11Q23.2) WILD-TYPE" 
                    TCGA-CG-5722                     TCGA-CG-5723 
"DEL PEAK 27(11Q23.2) WILD-TYPE" "DEL PEAK 27(11Q23.2) WILD-TYPE" 
                    TCGA-CG-5724                     TCGA-CG-5725 
  "DEL PEAK 27(11Q23.2) MUTATED"   "DEL PEAK 27(11Q23.2) MUTATED" 
                    TCGA-CG-5726                     TCGA-CG-5727 
"DEL PEAK 27(11Q23.2) WILD-TYPE" "DEL PEAK 27(11Q23.2) WILD-TYPE" 
                    TCGA-CG-5728                     TCGA-CG-5730 
"DEL PEAK 27(11Q23.2) WILD-TYPE" "DEL PEAK 27(11Q23.2) WILD-TYPE" 
                    TCGA-CG-5732                     TCGA-CG-5733 
"DEL PEAK 27(11Q23.2) WILD-TYPE" "DEL PEAK 27(11Q23.2) WILD-TYPE" 
                    TCGA-CG-5734                     TCGA-D7-5577 
"DEL PEAK 27(11Q23.2) WILD-TYPE" "DEL PEAK 27(11Q23.2) WILD-TYPE" 
                    TCGA-D7-5578                     TCGA-D7-5579 
  "DEL PEAK 27(11Q23.2) MUTATED"   "DEL PEAK 27(11Q23.2) MUTATED" 
                    TCGA-D7-6518                     TCGA-D7-6519 
"DEL PEAK 27(11Q23.2) WILD-TYPE" "DEL PEAK 27(11Q23.2) WILD-TYPE" 
                    TCGA-D7-6520                     TCGA-D7-6521 
"DEL PEAK 27(11Q23.2) WILD-TYPE" "DEL PEAK 27(11Q23.2) WILD-TYPE" 
                    TCGA-D7-6522                     TCGA-D7-6524 
"DEL PEAK 27(11Q23.2) WILD-TYPE" "DEL PEAK 27(11Q23.2) WILD-TYPE" 
                    TCGA-D7-6525                     TCGA-D7-6526 
"DEL PEAK 27(11Q23.2) WILD-TYPE" "DEL PEAK 27(11Q23.2) WILD-TYPE" 
                    TCGA-D7-6527                     TCGA-D7-6528 
  "DEL PEAK 27(11Q23.2) MUTATED" "DEL PEAK 27(11Q23.2) WILD-TYPE" 
                    TCGA-D7-6815                     TCGA-D7-6817 
  "DEL PEAK 27(11Q23.2) MUTATED" "DEL PEAK 27(11Q23.2) WILD-TYPE" 
                    TCGA-D7-6818                     TCGA-D7-6820 
"DEL PEAK 27(11Q23.2) WILD-TYPE" "DEL PEAK 27(11Q23.2) WILD-TYPE" 
                    TCGA-D7-6822                     TCGA-EQ-5647 
"DEL PEAK 27(11Q23.2) WILD-TYPE"   "DEL PEAK 27(11Q23.2) MUTATED" 
                    TCGA-EQ-8122                     TCGA-F1-6177 
"DEL PEAK 27(11Q23.2) WILD-TYPE" "DEL PEAK 27(11Q23.2) WILD-TYPE" 
                    TCGA-F1-6874                     TCGA-F1-6875 
"DEL PEAK 27(11Q23.2) WILD-TYPE" "DEL PEAK 27(11Q23.2) WILD-TYPE" 
                    TCGA-FP-7735                     TCGA-FP-7829 
"DEL PEAK 27(11Q23.2) WILD-TYPE" "DEL PEAK 27(11Q23.2) WILD-TYPE" 
                    TCGA-FP-7916                     TCGA-FP-7998 
  "DEL PEAK 27(11Q23.2) MUTATED" "DEL PEAK 27(11Q23.2) WILD-TYPE" 
                    TCGA-HJ-7597                     TCGA-IN-7806 
  "DEL PEAK 27(11Q23.2) MUTATED" "DEL PEAK 27(11Q23.2) WILD-TYPE" 
                    TCGA-IN-7808                     TCGA-IP-7968 
"DEL PEAK 27(11Q23.2) WILD-TYPE"   "DEL PEAK 27(11Q23.2) MUTATED" 
                    TCGA-B7-5816                     TCGA-B7-5818 
"DEL PEAK 27(11Q23.2) WILD-TYPE" "DEL PEAK 27(11Q23.2) WILD-TYPE" 
                    TCGA-BR-6452                     TCGA-BR-6455 
"DEL PEAK 27(11Q23.2) WILD-TYPE" "DEL PEAK 27(11Q23.2) WILD-TYPE" 
                    TCGA-BR-6457                     TCGA-BR-6458 
"DEL PEAK 27(11Q23.2) WILD-TYPE" "DEL PEAK 27(11Q23.2) WILD-TYPE" 
                    TCGA-BR-6563                     TCGA-BR-6564 
"DEL PEAK 27(11Q23.2) WILD-TYPE"   "DEL PEAK 27(11Q23.2) MUTATED" 
                    TCGA-BR-6565                     TCGA-BR-6566 
"DEL PEAK 27(11Q23.2) WILD-TYPE" "DEL PEAK 27(11Q23.2) WILD-TYPE" 
                    TCGA-BR-6705                     TCGA-BR-6706 
"DEL PEAK 27(11Q23.2) WILD-TYPE" "DEL PEAK 27(11Q23.2) WILD-TYPE" 
                    TCGA-BR-6707                     TCGA-BR-6709 
"DEL PEAK 27(11Q23.2) WILD-TYPE"   "DEL PEAK 27(11Q23.2) MUTATED" 
                    TCGA-BR-6710                     TCGA-BR-6801 
"DEL PEAK 27(11Q23.2) WILD-TYPE" "DEL PEAK 27(11Q23.2) WILD-TYPE" 
                    TCGA-BR-6802                     TCGA-BR-6803 
"DEL PEAK 27(11Q23.2) WILD-TYPE" "DEL PEAK 27(11Q23.2) WILD-TYPE" 
                    TCGA-BR-6852                     TCGA-BR-7196 
"DEL PEAK 27(11Q23.2) WILD-TYPE" "DEL PEAK 27(11Q23.2) WILD-TYPE" 
                    TCGA-BR-7197                     TCGA-BR-7703 
"DEL PEAK 27(11Q23.2) WILD-TYPE" "DEL PEAK 27(11Q23.2) WILD-TYPE" 
                    TCGA-BR-7704                     TCGA-BR-7707 
"DEL PEAK 27(11Q23.2) WILD-TYPE" "DEL PEAK 27(11Q23.2) WILD-TYPE" 
                    TCGA-BR-7715                     TCGA-BR-7716 
"DEL PEAK 27(11Q23.2) WILD-TYPE" "DEL PEAK 27(11Q23.2) WILD-TYPE" 
                    TCGA-BR-7717                     TCGA-BR-7722 
"DEL PEAK 27(11Q23.2) WILD-TYPE"   "DEL PEAK 27(11Q23.2) MUTATED" 
                    TCGA-BR-7723                     TCGA-BR-7851 
"DEL PEAK 27(11Q23.2) WILD-TYPE" "DEL PEAK 27(11Q23.2) WILD-TYPE" 
                    TCGA-BR-7901                     TCGA-BR-7957 
"DEL PEAK 27(11Q23.2) WILD-TYPE" "DEL PEAK 27(11Q23.2) WILD-TYPE" 
                    TCGA-BR-7958                     TCGA-BR-7959 
"DEL PEAK 27(11Q23.2) WILD-TYPE" "DEL PEAK 27(11Q23.2) WILD-TYPE" 
                    TCGA-BR-8059                     TCGA-BR-8060 
"DEL PEAK 27(11Q23.2) WILD-TYPE" "DEL PEAK 27(11Q23.2) WILD-TYPE" 
                    TCGA-BR-8077                     TCGA-BR-8078 
"DEL PEAK 27(11Q23.2) WILD-TYPE" "DEL PEAK 27(11Q23.2) WILD-TYPE" 
                    TCGA-BR-8080                     TCGA-BR-8081 
"DEL PEAK 27(11Q23.2) WILD-TYPE" "DEL PEAK 27(11Q23.2) WILD-TYPE" 
                    TCGA-BR-8284                     TCGA-BR-8285 
"DEL PEAK 27(11Q23.2) WILD-TYPE" "DEL PEAK 27(11Q23.2) WILD-TYPE" 
                    TCGA-BR-8286                     TCGA-BR-8289 
"DEL PEAK 27(11Q23.2) WILD-TYPE" "DEL PEAK 27(11Q23.2) WILD-TYPE" 
                    TCGA-BR-8291                     TCGA-BR-8295 
"DEL PEAK 27(11Q23.2) WILD-TYPE" "DEL PEAK 27(11Q23.2) WILD-TYPE" 
                    TCGA-BR-8296                     TCGA-BR-8297 
"DEL PEAK 27(11Q23.2) WILD-TYPE" "DEL PEAK 27(11Q23.2) WILD-TYPE" 
                    TCGA-CD-5798                     TCGA-CD-5799 
"DEL PEAK 27(11Q23.2) WILD-TYPE"   "DEL PEAK 27(11Q23.2) MUTATED" 
                    TCGA-CD-5800                     TCGA-CD-5801 
  "DEL PEAK 27(11Q23.2) MUTATED" "DEL PEAK 27(11Q23.2) WILD-TYPE" 
                    TCGA-CD-5802                     TCGA-CD-5803 
  "DEL PEAK 27(11Q23.2) MUTATED" "DEL PEAK 27(11Q23.2) WILD-TYPE" 
                    TCGA-CG-4300                     TCGA-CG-4301 
"DEL PEAK 27(11Q23.2) WILD-TYPE"   "DEL PEAK 27(11Q23.2) MUTATED" 
                    TCGA-CG-4304                     TCGA-CG-4305 
  "DEL PEAK 27(11Q23.2) MUTATED" "DEL PEAK 27(11Q23.2) WILD-TYPE" 
                    TCGA-CG-4306                     TCGA-CG-4436 
"DEL PEAK 27(11Q23.2) WILD-TYPE" "DEL PEAK 27(11Q23.2) WILD-TYPE" 
                    TCGA-CG-4437                     TCGA-CG-4438 
  "DEL PEAK 27(11Q23.2) MUTATED" "DEL PEAK 27(11Q23.2) WILD-TYPE" 
                    TCGA-CG-4440                     TCGA-CG-4441 
"DEL PEAK 27(11Q23.2) WILD-TYPE"   "DEL PEAK 27(11Q23.2) MUTATED" 
                    TCGA-CG-4443                     TCGA-CG-4444 
  "DEL PEAK 27(11Q23.2) MUTATED" "DEL PEAK 27(11Q23.2) WILD-TYPE" 
                    TCGA-CG-4449                     TCGA-CG-4455 
"DEL PEAK 27(11Q23.2) WILD-TYPE"   "DEL PEAK 27(11Q23.2) MUTATED" 
                    TCGA-CG-4460                     TCGA-CG-4462 
"DEL PEAK 27(11Q23.2) WILD-TYPE" "DEL PEAK 27(11Q23.2) WILD-TYPE" 
                    TCGA-CG-4465                     TCGA-CG-4466 
"DEL PEAK 27(11Q23.2) WILD-TYPE" "DEL PEAK 27(11Q23.2) WILD-TYPE" 
                    TCGA-CG-4469                     TCGA-CG-4472 
"DEL PEAK 27(11Q23.2) WILD-TYPE" "DEL PEAK 27(11Q23.2) WILD-TYPE" 
                    TCGA-CG-4474                     TCGA-CG-4477 
  "DEL PEAK 27(11Q23.2) MUTATED" "DEL PEAK 27(11Q23.2) WILD-TYPE" 
                    TCGA-CG-5716                     TCGA-CG-5717 
"DEL PEAK 27(11Q23.2) WILD-TYPE" "DEL PEAK 27(11Q23.2) WILD-TYPE" 
                    TCGA-CG-5718                     TCGA-CG-5719 
  "DEL PEAK 27(11Q23.2) MUTATED"   "DEL PEAK 27(11Q23.2) MUTATED" 
                    TCGA-CG-5720                     TCGA-CG-5721 
"DEL PEAK 27(11Q23.2) WILD-TYPE" "DEL PEAK 27(11Q23.2) WILD-TYPE" 
                    TCGA-CG-5722                     TCGA-CG-5723 
"DEL PEAK 27(11Q23.2) WILD-TYPE" "DEL PEAK 27(11Q23.2) WILD-TYPE" 
                    TCGA-CG-5724                     TCGA-CG-5725 
  "DEL PEAK 27(11Q23.2) MUTATED"   "DEL PEAK 27(11Q23.2) MUTATED" 
                    TCGA-CG-5726                     TCGA-CG-5727 
"DEL PEAK 27(11Q23.2) WILD-TYPE" "DEL PEAK 27(11Q23.2) WILD-TYPE" 
                    TCGA-CG-5728                     TCGA-CG-5730 
"DEL PEAK 27(11Q23.2) WILD-TYPE" "DEL PEAK 27(11Q23.2) WILD-TYPE" 
                    TCGA-CG-5732                     TCGA-CG-5733 
"DEL PEAK 27(11Q23.2) WILD-TYPE" "DEL PEAK 27(11Q23.2) WILD-TYPE" 
                    TCGA-CG-5734                     TCGA-D7-5577 
"DEL PEAK 27(11Q23.2) WILD-TYPE" "DEL PEAK 27(11Q23.2) WILD-TYPE" 
                    TCGA-D7-5578                     TCGA-D7-5579 
  "DEL PEAK 27(11Q23.2) MUTATED"   "DEL PEAK 27(11Q23.2) MUTATED" 
                    TCGA-D7-6518                     TCGA-D7-6519 
"DEL PEAK 27(11Q23.2) WILD-TYPE" "DEL PEAK 27(11Q23.2) WILD-TYPE" 
                    TCGA-D7-6520                     TCGA-D7-6521 
"DEL PEAK 27(11Q23.2) WILD-TYPE" "DEL PEAK 27(11Q23.2) WILD-TYPE" 
                    TCGA-D7-6522                     TCGA-D7-6524 
"DEL PEAK 27(11Q23.2) WILD-TYPE" "DEL PEAK 27(11Q23.2) WILD-TYPE" 
                    TCGA-D7-6525                     TCGA-D7-6526 
"DEL PEAK 27(11Q23.2) WILD-TYPE" "DEL PEAK 27(11Q23.2) WILD-TYPE" 
                    TCGA-D7-6527                     TCGA-D7-6528 
  "DEL PEAK 27(11Q23.2) MUTATED" "DEL PEAK 27(11Q23.2) WILD-TYPE" 
                    TCGA-D7-6815                     TCGA-D7-6817 
  "DEL PEAK 27(11Q23.2) MUTATED" "DEL PEAK 27(11Q23.2) WILD-TYPE" 
                    TCGA-D7-6818                     TCGA-D7-6820 
"DEL PEAK 27(11Q23.2) WILD-TYPE" "DEL PEAK 27(11Q23.2) WILD-TYPE" 
                    TCGA-D7-6822                     TCGA-EQ-5647 
"DEL PEAK 27(11Q23.2) WILD-TYPE"   "DEL PEAK 27(11Q23.2) MUTATED" 
                    TCGA-EQ-8122                     TCGA-F1-6177 
"DEL PEAK 27(11Q23.2) WILD-TYPE" "DEL PEAK 27(11Q23.2) WILD-TYPE" 
                    TCGA-F1-6874                     TCGA-F1-6875 
"DEL PEAK 27(11Q23.2) WILD-TYPE" "DEL PEAK 27(11Q23.2) WILD-TYPE" 
                    TCGA-FP-7735                     TCGA-FP-7829 
"DEL PEAK 27(11Q23.2) WILD-TYPE" "DEL PEAK 27(11Q23.2) WILD-TYPE" 
                    TCGA-FP-7916                     TCGA-FP-7998 
  "DEL PEAK 27(11Q23.2) MUTATED" "DEL PEAK 27(11Q23.2) WILD-TYPE" 
                    TCGA-HJ-7597                     TCGA-IN-7806 
  "DEL PEAK 27(11Q23.2) MUTATED" "DEL PEAK 27(11Q23.2) WILD-TYPE" 
                    TCGA-IN-7808                     TCGA-IP-7968 
"DEL PEAK 27(11Q23.2) WILD-TYPE"   "DEL PEAK 27(11Q23.2) MUTATED" 
                    TCGA-B7-5816                     TCGA-B7-5818 
"DEL PEAK 27(11Q23.2) WILD-TYPE" "DEL PEAK 27(11Q23.2) WILD-TYPE" 
                    TCGA-BR-6452                     TCGA-BR-6455 
"DEL PEAK 27(11Q23.2) WILD-TYPE" "DEL PEAK 27(11Q23.2) WILD-TYPE" 
                    TCGA-BR-6457                     TCGA-BR-6458 
"DEL PEAK 27(11Q23.2) WILD-TYPE" "DEL PEAK 27(11Q23.2) WILD-TYPE" 
                    TCGA-BR-6563                     TCGA-BR-6564 
"DEL PEAK 27(11Q23.2) WILD-TYPE"   "DEL PEAK 27(11Q23.2) MUTATED" 
                    TCGA-BR-6565                     TCGA-BR-6566 
"DEL PEAK 27(11Q23.2) WILD-TYPE" "DEL PEAK 27(11Q23.2) WILD-TYPE" 
                    TCGA-BR-6705                     TCGA-BR-6706 
"DEL PEAK 27(11Q23.2) WILD-TYPE" "DEL PEAK 27(11Q23.2) WILD-TYPE" 
                    TCGA-BR-6707                     TCGA-BR-6709 
"DEL PEAK 27(11Q23.2) WILD-TYPE"   "DEL PEAK 27(11Q23.2) MUTATED" 
                    TCGA-BR-6710                     TCGA-BR-6801 
"DEL PEAK 27(11Q23.2) WILD-TYPE" "DEL PEAK 27(11Q23.2) WILD-TYPE" 
                    TCGA-BR-6802                     TCGA-BR-6803 
"DEL PEAK 27(11Q23.2) WILD-TYPE" "DEL PEAK 27(11Q23.2) WILD-TYPE" 
                    TCGA-BR-6852                     TCGA-BR-7196 
"DEL PEAK 27(11Q23.2) WILD-TYPE" "DEL PEAK 27(11Q23.2) WILD-TYPE" 
                    TCGA-BR-7197                     TCGA-BR-7703 
"DEL PEAK 27(11Q23.2) WILD-TYPE" "DEL PEAK 27(11Q23.2) WILD-TYPE" 
                    TCGA-BR-7704                     TCGA-BR-7707 
"DEL PEAK 27(11Q23.2) WILD-TYPE" "DEL PEAK 27(11Q23.2) WILD-TYPE" 
                    TCGA-BR-7715                     TCGA-BR-7716 
"DEL PEAK 27(11Q23.2) WILD-TYPE" "DEL PEAK 27(11Q23.2) WILD-TYPE" 
                    TCGA-BR-7717                     TCGA-BR-7722 
"DEL PEAK 27(11Q23.2) WILD-TYPE"   "DEL PEAK 27(11Q23.2) MUTATED" 
                    TCGA-BR-7723                     TCGA-BR-7851 
"DEL PEAK 27(11Q23.2) WILD-TYPE" "DEL PEAK 27(11Q23.2) WILD-TYPE" 
                    TCGA-BR-7901                     TCGA-BR-7957 
"DEL PEAK 27(11Q23.2) WILD-TYPE" "DEL PEAK 27(11Q23.2) WILD-TYPE" 
                    TCGA-BR-7958                     TCGA-BR-7959 
"DEL PEAK 27(11Q23.2) WILD-TYPE" "DEL PEAK 27(11Q23.2) WILD-TYPE" 
                    TCGA-BR-8059                     TCGA-BR-8060 
"DEL PEAK 27(11Q23.2) WILD-TYPE" "DEL PEAK 27(11Q23.2) WILD-TYPE" 
                    TCGA-BR-8077                     TCGA-BR-8078 
"DEL PEAK 27(11Q23.2) WILD-TYPE" "DEL PEAK 27(11Q23.2) WILD-TYPE" 
                    TCGA-BR-8080                     TCGA-BR-8081 
"DEL PEAK 27(11Q23.2) WILD-TYPE" "DEL PEAK 27(11Q23.2) WILD-TYPE" 
                    TCGA-BR-8284                     TCGA-BR-8285 
"DEL PEAK 27(11Q23.2) WILD-TYPE" "DEL PEAK 27(11Q23.2) WILD-TYPE" 
                    TCGA-BR-8286                     TCGA-BR-8289 
"DEL PEAK 27(11Q23.2) WILD-TYPE" "DEL PEAK 27(11Q23.2) WILD-TYPE" 
                    TCGA-BR-8291                     TCGA-BR-8295 
"DEL PEAK 27(11Q23.2) WILD-TYPE" "DEL PEAK 27(11Q23.2) WILD-TYPE" 
                    TCGA-BR-8296                     TCGA-BR-8297 
"DEL PEAK 27(11Q23.2) WILD-TYPE" "DEL PEAK 27(11Q23.2) WILD-TYPE" 
                    TCGA-CD-5798                     TCGA-CD-5799 
"DEL PEAK 27(11Q23.2) WILD-TYPE"   "DEL PEAK 27(11Q23.2) MUTATED" 
                    TCGA-CD-5800                     TCGA-CD-5801 
  "DEL PEAK 27(11Q23.2) MUTATED" "DEL PEAK 27(11Q23.2) WILD-TYPE" 
                    TCGA-CD-5802                     TCGA-CD-5803 
  "DEL PEAK 27(11Q23.2) MUTATED" "DEL PEAK 27(11Q23.2) WILD-TYPE" 
                    TCGA-CG-4300                     TCGA-CG-4301 
"DEL PEAK 27(11Q23.2) WILD-TYPE"   "DEL PEAK 27(11Q23.2) MUTATED" 
                    TCGA-CG-4304                     TCGA-CG-4305 
  "DEL PEAK 27(11Q23.2) MUTATED" "DEL PEAK 27(11Q23.2) WILD-TYPE" 
                    TCGA-CG-4306                     TCGA-CG-4436 
"DEL PEAK 27(11Q23.2) WILD-TYPE" "DEL PEAK 27(11Q23.2) WILD-TYPE" 
                    TCGA-CG-4437                     TCGA-CG-4438 
  "DEL PEAK 27(11Q23.2) MUTATED" "DEL PEAK 27(11Q23.2) WILD-TYPE" 
                    TCGA-CG-4440                     TCGA-CG-4441 
"DEL PEAK 27(11Q23.2) WILD-TYPE"   "DEL PEAK 27(11Q23.2) MUTATED" 
                    TCGA-CG-4443                     TCGA-CG-4444 
  "DEL PEAK 27(11Q23.2) MUTATED" "DEL PEAK 27(11Q23.2) WILD-TYPE" 
                    TCGA-CG-4449                     TCGA-CG-4455 
"DEL PEAK 27(11Q23.2) WILD-TYPE"   "DEL PEAK 27(11Q23.2) MUTATED" 
                    TCGA-CG-4460                     TCGA-CG-4462 
"DEL PEAK 27(11Q23.2) WILD-TYPE" "DEL PEAK 27(11Q23.2) WILD-TYPE" 
                    TCGA-CG-4465                     TCGA-CG-4466 
"DEL PEAK 27(11Q23.2) WILD-TYPE" "DEL PEAK 27(11Q23.2) WILD-TYPE" 
                    TCGA-CG-4469                     TCGA-CG-4472 
"DEL PEAK 27(11Q23.2) WILD-TYPE" "DEL PEAK 27(11Q23.2) WILD-TYPE" 
                    TCGA-CG-4474                     TCGA-CG-4477 
  "DEL PEAK 27(11Q23.2) MUTATED" "DEL PEAK 27(11Q23.2) WILD-TYPE" 
                    TCGA-CG-5716                     TCGA-CG-5717 
"DEL PEAK 27(11Q23.2) WILD-TYPE" "DEL PEAK 27(11Q23.2) WILD-TYPE" 
                    TCGA-CG-5718                     TCGA-CG-5719 
  "DEL PEAK 27(11Q23.2) MUTATED"   "DEL PEAK 27(11Q23.2) MUTATED" 
                    TCGA-CG-5720                     TCGA-CG-5721 
"DEL PEAK 27(11Q23.2) WILD-TYPE" "DEL PEAK 27(11Q23.2) WILD-TYPE" 
                    TCGA-CG-5722                     TCGA-CG-5723 
"DEL PEAK 27(11Q23.2) WILD-TYPE" "DEL PEAK 27(11Q23.2) WILD-TYPE" 
                    TCGA-CG-5724                     TCGA-CG-5725 
  "DEL PEAK 27(11Q23.2) MUTATED"   "DEL PEAK 27(11Q23.2) MUTATED" 
                    TCGA-CG-5726                     TCGA-CG-5727 
"DEL PEAK 27(11Q23.2) WILD-TYPE" "DEL PEAK 27(11Q23.2) WILD-TYPE" 
                    TCGA-CG-5728                     TCGA-CG-5730 
"DEL PEAK 27(11Q23.2) WILD-TYPE" "DEL PEAK 27(11Q23.2) WILD-TYPE" 
                    TCGA-CG-5732                     TCGA-CG-5733 
"DEL PEAK 27(11Q23.2) WILD-TYPE" "DEL PEAK 27(11Q23.2) WILD-TYPE" 
                    TCGA-CG-5734                     TCGA-D7-5577 
"DEL PEAK 27(11Q23.2) WILD-TYPE" "DEL PEAK 27(11Q23.2) WILD-TYPE" 
                    TCGA-D7-5578                     TCGA-D7-5579 
  "DEL PEAK 27(11Q23.2) MUTATED"   "DEL PEAK 27(11Q23.2) MUTATED" 
                    TCGA-D7-6518                     TCGA-D7-6519 
"DEL PEAK 27(11Q23.2) WILD-TYPE" "DEL PEAK 27(11Q23.2) WILD-TYPE" 
                    TCGA-D7-6520                     TCGA-D7-6521 
"DEL PEAK 27(11Q23.2) WILD-TYPE" "DEL PEAK 27(11Q23.2) WILD-TYPE" 
                    TCGA-D7-6522                     TCGA-D7-6524 
"DEL PEAK 27(11Q23.2) WILD-TYPE" "DEL PEAK 27(11Q23.2) WILD-TYPE" 
                    TCGA-D7-6525                     TCGA-D7-6526 
"DEL PEAK 27(11Q23.2) WILD-TYPE" "DEL PEAK 27(11Q23.2) WILD-TYPE" 
                    TCGA-D7-6527                     TCGA-D7-6528 
  "DEL PEAK 27(11Q23.2) MUTATED" "DEL PEAK 27(11Q23.2) WILD-TYPE" 
                    TCGA-D7-6815                     TCGA-D7-6817 
  "DEL PEAK 27(11Q23.2) MUTATED" "DEL PEAK 27(11Q23.2) WILD-TYPE" 
                    TCGA-D7-6818                     TCGA-D7-6820 
"DEL PEAK 27(11Q23.2) WILD-TYPE" "DEL PEAK 27(11Q23.2) WILD-TYPE" 
                    TCGA-D7-6822                     TCGA-EQ-5647 
"DEL PEAK 27(11Q23.2) WILD-TYPE"   "DEL PEAK 27(11Q23.2) MUTATED" 
                    TCGA-EQ-8122                     TCGA-F1-6177 
"DEL PEAK 27(11Q23.2) WILD-TYPE" "DEL PEAK 27(11Q23.2) WILD-TYPE" 
                    TCGA-F1-6874                     TCGA-F1-6875 
"DEL PEAK 27(11Q23.2) WILD-TYPE" "DEL PEAK 27(11Q23.2) WILD-TYPE" 
                    TCGA-FP-7735                     TCGA-FP-7829 
"DEL PEAK 27(11Q23.2) WILD-TYPE" "DEL PEAK 27(11Q23.2) WILD-TYPE" 
                    TCGA-FP-7916                     TCGA-FP-7998 
  "DEL PEAK 27(11Q23.2) MUTATED" "DEL PEAK 27(11Q23.2) WILD-TYPE" 
                    TCGA-HJ-7597                     TCGA-IN-7806 
  "DEL PEAK 27(11Q23.2) MUTATED" "DEL PEAK 27(11Q23.2) WILD-TYPE" 
                    TCGA-IN-7808                     TCGA-IP-7968 
"DEL PEAK 27(11Q23.2) WILD-TYPE"   "DEL PEAK 27(11Q23.2) MUTATED" 
[1] "hr=" "1.7"
D53V2, continuous
D53V3, binary
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  DEL PEAK 27(11Q23.2) MUTATED     11   23
  DEL PEAK 27(11Q23.2) WILD-TYPE   54   73
        clus
vv       DEL PEAK 27(11Q23.2) MUTATED DEL PEAK 27(11Q23.2) WILD-TYPE
  FEMALE                           11                             54
  MALE                             23                             73
D53V4, multiclass
D53V5, multiclass
    clus
vv   DEL PEAK 27(11Q23.2) MUTATED DEL PEAK 27(11Q23.2) WILD-TYPE
  T1                            2                              4
  T2                           14                             39
  T3                           12                             47
  T4                            5                             28
D53V6, multiclass
    clus
vv   DEL PEAK 27(11Q23.2) MUTATED DEL PEAK 27(11Q23.2) WILD-TYPE
  N0                           10                             40
  N1                           12                             45
  N2                            7                             17
  N3                            4                             15
D53V7, multiclass
    clus
vv   DEL PEAK 27(11Q23.2) MUTATED DEL PEAK 27(11Q23.2) WILD-TYPE
  M0                           25                            107
  M1                            5                             13
  MX                            4                              7
D53V8, multiclass
     clus
vv    DEL PEAK 27(11Q23.2) MUTATED DEL PEAK 27(11Q23.2) WILD-TYPE
  I                              6                             19
  II                            11                             32
  III                            9                             39
  IV                             6                             23
D53V9, binary
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  DEL PEAK 27(11Q23.2) MUTATED     32    2
  DEL PEAK 27(11Q23.2) WILD-TYPE  124    3
     clus
vv    DEL PEAK 27(11Q23.2) MUTATED DEL PEAK 27(11Q23.2) WILD-TYPE
  NO                             2                              3
  YES                           32                            124

Clustering(54) Variable = Del Peak 28(12p13.2) mutation analysis
D54V1, survival
                    TCGA-B7-5816                     TCGA-B7-5818 
"DEL PEAK 28(12P13.2) WILD-TYPE" "DEL PEAK 28(12P13.2) WILD-TYPE" 
                    TCGA-BR-6452                     TCGA-BR-6455 
"DEL PEAK 28(12P13.2) WILD-TYPE" "DEL PEAK 28(12P13.2) WILD-TYPE" 
                    TCGA-BR-6457                     TCGA-BR-6458 
"DEL PEAK 28(12P13.2) WILD-TYPE"   "DEL PEAK 28(12P13.2) MUTATED" 
                    TCGA-BR-6563                     TCGA-BR-6564 
"DEL PEAK 28(12P13.2) WILD-TYPE" "DEL PEAK 28(12P13.2) WILD-TYPE" 
                    TCGA-BR-6565                     TCGA-BR-6566 
"DEL PEAK 28(12P13.2) WILD-TYPE" "DEL PEAK 28(12P13.2) WILD-TYPE" 
                    TCGA-BR-6705                     TCGA-BR-6706 
"DEL PEAK 28(12P13.2) WILD-TYPE" "DEL PEAK 28(12P13.2) WILD-TYPE" 
                    TCGA-BR-6707                     TCGA-BR-6709 
"DEL PEAK 28(12P13.2) WILD-TYPE"   "DEL PEAK 28(12P13.2) MUTATED" 
                    TCGA-BR-6710                     TCGA-BR-6801 
"DEL PEAK 28(12P13.2) WILD-TYPE" "DEL PEAK 28(12P13.2) WILD-TYPE" 
                    TCGA-BR-6802                     TCGA-BR-6803 
"DEL PEAK 28(12P13.2) WILD-TYPE" "DEL PEAK 28(12P13.2) WILD-TYPE" 
                    TCGA-BR-6852                     TCGA-BR-7196 
"DEL PEAK 28(12P13.2) WILD-TYPE" "DEL PEAK 28(12P13.2) WILD-TYPE" 
                    TCGA-BR-7197                     TCGA-BR-7703 
"DEL PEAK 28(12P13.2) WILD-TYPE" "DEL PEAK 28(12P13.2) WILD-TYPE" 
                    TCGA-BR-7704                     TCGA-BR-7707 
"DEL PEAK 28(12P13.2) WILD-TYPE" "DEL PEAK 28(12P13.2) WILD-TYPE" 
                    TCGA-BR-7715                     TCGA-BR-7716 
  "DEL PEAK 28(12P13.2) MUTATED" "DEL PEAK 28(12P13.2) WILD-TYPE" 
                    TCGA-BR-7717                     TCGA-BR-7722 
"DEL PEAK 28(12P13.2) WILD-TYPE" "DEL PEAK 28(12P13.2) WILD-TYPE" 
                    TCGA-BR-7723                     TCGA-BR-7851 
"DEL PEAK 28(12P13.2) WILD-TYPE" "DEL PEAK 28(12P13.2) WILD-TYPE" 
                    TCGA-BR-7901                     TCGA-BR-7957 
  "DEL PEAK 28(12P13.2) MUTATED" "DEL PEAK 28(12P13.2) WILD-TYPE" 
                    TCGA-BR-7958                     TCGA-BR-7959 
"DEL PEAK 28(12P13.2) WILD-TYPE" "DEL PEAK 28(12P13.2) WILD-TYPE" 
                    TCGA-BR-8059                     TCGA-BR-8060 
"DEL PEAK 28(12P13.2) WILD-TYPE" "DEL PEAK 28(12P13.2) WILD-TYPE" 
                    TCGA-BR-8077                     TCGA-BR-8078 
"DEL PEAK 28(12P13.2) WILD-TYPE" "DEL PEAK 28(12P13.2) WILD-TYPE" 
                    TCGA-BR-8080                     TCGA-BR-8081 
"DEL PEAK 28(12P13.2) WILD-TYPE" "DEL PEAK 28(12P13.2) WILD-TYPE" 
                    TCGA-BR-8284                     TCGA-BR-8285 
"DEL PEAK 28(12P13.2) WILD-TYPE" "DEL PEAK 28(12P13.2) WILD-TYPE" 
                    TCGA-BR-8286                     TCGA-BR-8289 
"DEL PEAK 28(12P13.2) WILD-TYPE" "DEL PEAK 28(12P13.2) WILD-TYPE" 
                    TCGA-BR-8291                     TCGA-BR-8295 
"DEL PEAK 28(12P13.2) WILD-TYPE" "DEL PEAK 28(12P13.2) WILD-TYPE" 
                    TCGA-BR-8296                     TCGA-BR-8297 
"DEL PEAK 28(12P13.2) WILD-TYPE" "DEL PEAK 28(12P13.2) WILD-TYPE" 
                    TCGA-CD-5798                     TCGA-CD-5799 
"DEL PEAK 28(12P13.2) WILD-TYPE" "DEL PEAK 28(12P13.2) WILD-TYPE" 
                    TCGA-CD-5800                     TCGA-CD-5801 
  "DEL PEAK 28(12P13.2) MUTATED" "DEL PEAK 28(12P13.2) WILD-TYPE" 
                    TCGA-CD-5802                     TCGA-CD-5803 
"DEL PEAK 28(12P13.2) WILD-TYPE" "DEL PEAK 28(12P13.2) WILD-TYPE" 
                    TCGA-CG-4300                     TCGA-CG-4301 
"DEL PEAK 28(12P13.2) WILD-TYPE"   "DEL PEAK 28(12P13.2) MUTATED" 
                    TCGA-CG-4304                     TCGA-CG-4305 
"DEL PEAK 28(12P13.2) WILD-TYPE" "DEL PEAK 28(12P13.2) WILD-TYPE" 
                    TCGA-CG-4306                     TCGA-CG-4436 
"DEL PEAK 28(12P13.2) WILD-TYPE"   "DEL PEAK 28(12P13.2) MUTATED" 
                    TCGA-CG-4437                     TCGA-CG-4438 
"DEL PEAK 28(12P13.2) WILD-TYPE" "DEL PEAK 28(12P13.2) WILD-TYPE" 
                    TCGA-CG-4440                     TCGA-CG-4441 
"DEL PEAK 28(12P13.2) WILD-TYPE" "DEL PEAK 28(12P13.2) WILD-TYPE" 
                    TCGA-CG-4443                     TCGA-CG-4444 
"DEL PEAK 28(12P13.2) WILD-TYPE" "DEL PEAK 28(12P13.2) WILD-TYPE" 
                    TCGA-CG-4449                     TCGA-CG-4455 
"DEL PEAK 28(12P13.2) WILD-TYPE" "DEL PEAK 28(12P13.2) WILD-TYPE" 
                    TCGA-CG-4460                     TCGA-CG-4462 
"DEL PEAK 28(12P13.2) WILD-TYPE" "DEL PEAK 28(12P13.2) WILD-TYPE" 
                    TCGA-CG-4465                     TCGA-CG-4466 
"DEL PEAK 28(12P13.2) WILD-TYPE" "DEL PEAK 28(12P13.2) WILD-TYPE" 
                    TCGA-CG-4469                     TCGA-CG-4472 
"DEL PEAK 28(12P13.2) WILD-TYPE" "DEL PEAK 28(12P13.2) WILD-TYPE" 
                    TCGA-CG-4474                     TCGA-CG-4477 
"DEL PEAK 28(12P13.2) WILD-TYPE" "DEL PEAK 28(12P13.2) WILD-TYPE" 
                    TCGA-CG-5716                     TCGA-CG-5717 
"DEL PEAK 28(12P13.2) WILD-TYPE" "DEL PEAK 28(12P13.2) WILD-TYPE" 
                    TCGA-CG-5718                     TCGA-CG-5719 
"DEL PEAK 28(12P13.2) WILD-TYPE" "DEL PEAK 28(12P13.2) WILD-TYPE" 
                    TCGA-CG-5720                     TCGA-CG-5721 
"DEL PEAK 28(12P13.2) WILD-TYPE" "DEL PEAK 28(12P13.2) WILD-TYPE" 
                    TCGA-CG-5722                     TCGA-CG-5723 
"DEL PEAK 28(12P13.2) WILD-TYPE" "DEL PEAK 28(12P13.2) WILD-TYPE" 
                    TCGA-CG-5724                     TCGA-CG-5725 
"DEL PEAK 28(12P13.2) WILD-TYPE"   "DEL PEAK 28(12P13.2) MUTATED" 
                    TCGA-CG-5726                     TCGA-CG-5727 
"DEL PEAK 28(12P13.2) WILD-TYPE" "DEL PEAK 28(12P13.2) WILD-TYPE" 
                    TCGA-CG-5728                     TCGA-CG-5730 
"DEL PEAK 28(12P13.2) WILD-TYPE" "DEL PEAK 28(12P13.2) WILD-TYPE" 
                    TCGA-CG-5732                     TCGA-CG-5733 
  "DEL PEAK 28(12P13.2) MUTATED" "DEL PEAK 28(12P13.2) WILD-TYPE" 
                    TCGA-CG-5734                     TCGA-D7-5577 
"DEL PEAK 28(12P13.2) WILD-TYPE" "DEL PEAK 28(12P13.2) WILD-TYPE" 
                    TCGA-D7-5578                     TCGA-D7-5579 
"DEL PEAK 28(12P13.2) WILD-TYPE"   "DEL PEAK 28(12P13.2) MUTATED" 
                    TCGA-D7-6518                     TCGA-D7-6519 
"DEL PEAK 28(12P13.2) WILD-TYPE"   "DEL PEAK 28(12P13.2) MUTATED" 
                    TCGA-D7-6520                     TCGA-D7-6521 
"DEL PEAK 28(12P13.2) WILD-TYPE" "DEL PEAK 28(12P13.2) WILD-TYPE" 
                    TCGA-D7-6522                     TCGA-D7-6524 
"DEL PEAK 28(12P13.2) WILD-TYPE" "DEL PEAK 28(12P13.2) WILD-TYPE" 
                    TCGA-D7-6525                     TCGA-D7-6526 
"DEL PEAK 28(12P13.2) WILD-TYPE" "DEL PEAK 28(12P13.2) WILD-TYPE" 
                    TCGA-D7-6527                     TCGA-D7-6528 
"DEL PEAK 28(12P13.2) WILD-TYPE"   "DEL PEAK 28(12P13.2) MUTATED" 
                    TCGA-D7-6815                     TCGA-D7-6817 
"DEL PEAK 28(12P13.2) WILD-TYPE"   "DEL PEAK 28(12P13.2) MUTATED" 
                    TCGA-D7-6818                     TCGA-D7-6820 
"DEL PEAK 28(12P13.2) WILD-TYPE" "DEL PEAK 28(12P13.2) WILD-TYPE" 
                    TCGA-D7-6822                     TCGA-EQ-5647 
  "DEL PEAK 28(12P13.2) MUTATED"   "DEL PEAK 28(12P13.2) MUTATED" 
                    TCGA-EQ-8122                     TCGA-F1-6177 
"DEL PEAK 28(12P13.2) WILD-TYPE" "DEL PEAK 28(12P13.2) WILD-TYPE" 
                    TCGA-F1-6874                     TCGA-F1-6875 
"DEL PEAK 28(12P13.2) WILD-TYPE"   "DEL PEAK 28(12P13.2) MUTATED" 
                    TCGA-FP-7735                     TCGA-FP-7829 
"DEL PEAK 28(12P13.2) WILD-TYPE" "DEL PEAK 28(12P13.2) WILD-TYPE" 
                    TCGA-FP-7916                     TCGA-FP-7998 
"DEL PEAK 28(12P13.2) WILD-TYPE" "DEL PEAK 28(12P13.2) WILD-TYPE" 
                    TCGA-HJ-7597                     TCGA-IN-7806 
"DEL PEAK 28(12P13.2) WILD-TYPE" "DEL PEAK 28(12P13.2) WILD-TYPE" 
                    TCGA-IN-7808                     TCGA-IP-7968 
"DEL PEAK 28(12P13.2) WILD-TYPE"   "DEL PEAK 28(12P13.2) MUTATED" 
                    TCGA-B7-5816                     TCGA-B7-5818 
"DEL PEAK 28(12P13.2) WILD-TYPE" "DEL PEAK 28(12P13.2) WILD-TYPE" 
                    TCGA-BR-6452                     TCGA-BR-6455 
"DEL PEAK 28(12P13.2) WILD-TYPE" "DEL PEAK 28(12P13.2) WILD-TYPE" 
                    TCGA-BR-6457                     TCGA-BR-6458 
"DEL PEAK 28(12P13.2) WILD-TYPE"   "DEL PEAK 28(12P13.2) MUTATED" 
                    TCGA-BR-6563                     TCGA-BR-6564 
"DEL PEAK 28(12P13.2) WILD-TYPE" "DEL PEAK 28(12P13.2) WILD-TYPE" 
                    TCGA-BR-6565                     TCGA-BR-6566 
"DEL PEAK 28(12P13.2) WILD-TYPE" "DEL PEAK 28(12P13.2) WILD-TYPE" 
                    TCGA-BR-6705                     TCGA-BR-6706 
"DEL PEAK 28(12P13.2) WILD-TYPE" "DEL PEAK 28(12P13.2) WILD-TYPE" 
                    TCGA-BR-6707                     TCGA-BR-6709 
"DEL PEAK 28(12P13.2) WILD-TYPE"   "DEL PEAK 28(12P13.2) MUTATED" 
                    TCGA-BR-6710                     TCGA-BR-6801 
"DEL PEAK 28(12P13.2) WILD-TYPE" "DEL PEAK 28(12P13.2) WILD-TYPE" 
                    TCGA-BR-6802                     TCGA-BR-6803 
"DEL PEAK 28(12P13.2) WILD-TYPE" "DEL PEAK 28(12P13.2) WILD-TYPE" 
                    TCGA-BR-6852                     TCGA-BR-7196 
"DEL PEAK 28(12P13.2) WILD-TYPE" "DEL PEAK 28(12P13.2) WILD-TYPE" 
                    TCGA-BR-7197                     TCGA-BR-7703 
"DEL PEAK 28(12P13.2) WILD-TYPE" "DEL PEAK 28(12P13.2) WILD-TYPE" 
                    TCGA-BR-7704                     TCGA-BR-7707 
"DEL PEAK 28(12P13.2) WILD-TYPE" "DEL PEAK 28(12P13.2) WILD-TYPE" 
                    TCGA-BR-7715                     TCGA-BR-7716 
  "DEL PEAK 28(12P13.2) MUTATED" "DEL PEAK 28(12P13.2) WILD-TYPE" 
                    TCGA-BR-7717                     TCGA-BR-7722 
"DEL PEAK 28(12P13.2) WILD-TYPE" "DEL PEAK 28(12P13.2) WILD-TYPE" 
                    TCGA-BR-7723                     TCGA-BR-7851 
"DEL PEAK 28(12P13.2) WILD-TYPE" "DEL PEAK 28(12P13.2) WILD-TYPE" 
                    TCGA-BR-7901                     TCGA-BR-7957 
  "DEL PEAK 28(12P13.2) MUTATED" "DEL PEAK 28(12P13.2) WILD-TYPE" 
                    TCGA-BR-7958                     TCGA-BR-7959 
"DEL PEAK 28(12P13.2) WILD-TYPE" "DEL PEAK 28(12P13.2) WILD-TYPE" 
                    TCGA-BR-8059                     TCGA-BR-8060 
"DEL PEAK 28(12P13.2) WILD-TYPE" "DEL PEAK 28(12P13.2) WILD-TYPE" 
                    TCGA-BR-8077                     TCGA-BR-8078 
"DEL PEAK 28(12P13.2) WILD-TYPE" "DEL PEAK 28(12P13.2) WILD-TYPE" 
                    TCGA-BR-8080                     TCGA-BR-8081 
"DEL PEAK 28(12P13.2) WILD-TYPE" "DEL PEAK 28(12P13.2) WILD-TYPE" 
                    TCGA-BR-8284                     TCGA-BR-8285 
"DEL PEAK 28(12P13.2) WILD-TYPE" "DEL PEAK 28(12P13.2) WILD-TYPE" 
                    TCGA-BR-8286                     TCGA-BR-8289 
"DEL PEAK 28(12P13.2) WILD-TYPE" "DEL PEAK 28(12P13.2) WILD-TYPE" 
                    TCGA-BR-8291                     TCGA-BR-8295 
"DEL PEAK 28(12P13.2) WILD-TYPE" "DEL PEAK 28(12P13.2) WILD-TYPE" 
                    TCGA-BR-8296                     TCGA-BR-8297 
"DEL PEAK 28(12P13.2) WILD-TYPE" "DEL PEAK 28(12P13.2) WILD-TYPE" 
                    TCGA-CD-5798                     TCGA-CD-5799 
"DEL PEAK 28(12P13.2) WILD-TYPE" "DEL PEAK 28(12P13.2) WILD-TYPE" 
                    TCGA-CD-5800                     TCGA-CD-5801 
  "DEL PEAK 28(12P13.2) MUTATED" "DEL PEAK 28(12P13.2) WILD-TYPE" 
                    TCGA-CD-5802                     TCGA-CD-5803 
"DEL PEAK 28(12P13.2) WILD-TYPE" "DEL PEAK 28(12P13.2) WILD-TYPE" 
                    TCGA-CG-4300                     TCGA-CG-4301 
"DEL PEAK 28(12P13.2) WILD-TYPE"   "DEL PEAK 28(12P13.2) MUTATED" 
                    TCGA-CG-4304                     TCGA-CG-4305 
"DEL PEAK 28(12P13.2) WILD-TYPE" "DEL PEAK 28(12P13.2) WILD-TYPE" 
                    TCGA-CG-4306                     TCGA-CG-4436 
"DEL PEAK 28(12P13.2) WILD-TYPE"   "DEL PEAK 28(12P13.2) MUTATED" 
                    TCGA-CG-4437                     TCGA-CG-4438 
"DEL PEAK 28(12P13.2) WILD-TYPE" "DEL PEAK 28(12P13.2) WILD-TYPE" 
                    TCGA-CG-4440                     TCGA-CG-4441 
"DEL PEAK 28(12P13.2) WILD-TYPE" "DEL PEAK 28(12P13.2) WILD-TYPE" 
                    TCGA-CG-4443                     TCGA-CG-4444 
"DEL PEAK 28(12P13.2) WILD-TYPE" "DEL PEAK 28(12P13.2) WILD-TYPE" 
                    TCGA-CG-4449                     TCGA-CG-4455 
"DEL PEAK 28(12P13.2) WILD-TYPE" "DEL PEAK 28(12P13.2) WILD-TYPE" 
                    TCGA-CG-4460                     TCGA-CG-4462 
"DEL PEAK 28(12P13.2) WILD-TYPE" "DEL PEAK 28(12P13.2) WILD-TYPE" 
                    TCGA-CG-4465                     TCGA-CG-4466 
"DEL PEAK 28(12P13.2) WILD-TYPE" "DEL PEAK 28(12P13.2) WILD-TYPE" 
                    TCGA-CG-4469                     TCGA-CG-4472 
"DEL PEAK 28(12P13.2) WILD-TYPE" "DEL PEAK 28(12P13.2) WILD-TYPE" 
                    TCGA-CG-4474                     TCGA-CG-4477 
"DEL PEAK 28(12P13.2) WILD-TYPE" "DEL PEAK 28(12P13.2) WILD-TYPE" 
                    TCGA-CG-5716                     TCGA-CG-5717 
"DEL PEAK 28(12P13.2) WILD-TYPE" "DEL PEAK 28(12P13.2) WILD-TYPE" 
                    TCGA-CG-5718                     TCGA-CG-5719 
"DEL PEAK 28(12P13.2) WILD-TYPE" "DEL PEAK 28(12P13.2) WILD-TYPE" 
                    TCGA-CG-5720                     TCGA-CG-5721 
"DEL PEAK 28(12P13.2) WILD-TYPE" "DEL PEAK 28(12P13.2) WILD-TYPE" 
                    TCGA-CG-5722                     TCGA-CG-5723 
"DEL PEAK 28(12P13.2) WILD-TYPE" "DEL PEAK 28(12P13.2) WILD-TYPE" 
                    TCGA-CG-5724                     TCGA-CG-5725 
"DEL PEAK 28(12P13.2) WILD-TYPE"   "DEL PEAK 28(12P13.2) MUTATED" 
                    TCGA-CG-5726                     TCGA-CG-5727 
"DEL PEAK 28(12P13.2) WILD-TYPE" "DEL PEAK 28(12P13.2) WILD-TYPE" 
                    TCGA-CG-5728                     TCGA-CG-5730 
"DEL PEAK 28(12P13.2) WILD-TYPE" "DEL PEAK 28(12P13.2) WILD-TYPE" 
                    TCGA-CG-5732                     TCGA-CG-5733 
  "DEL PEAK 28(12P13.2) MUTATED" "DEL PEAK 28(12P13.2) WILD-TYPE" 
                    TCGA-CG-5734                     TCGA-D7-5577 
"DEL PEAK 28(12P13.2) WILD-TYPE" "DEL PEAK 28(12P13.2) WILD-TYPE" 
                    TCGA-D7-5578                     TCGA-D7-5579 
"DEL PEAK 28(12P13.2) WILD-TYPE"   "DEL PEAK 28(12P13.2) MUTATED" 
                    TCGA-D7-6518                     TCGA-D7-6519 
"DEL PEAK 28(12P13.2) WILD-TYPE"   "DEL PEAK 28(12P13.2) MUTATED" 
                    TCGA-D7-6520                     TCGA-D7-6521 
"DEL PEAK 28(12P13.2) WILD-TYPE" "DEL PEAK 28(12P13.2) WILD-TYPE" 
                    TCGA-D7-6522                     TCGA-D7-6524 
"DEL PEAK 28(12P13.2) WILD-TYPE" "DEL PEAK 28(12P13.2) WILD-TYPE" 
                    TCGA-D7-6525                     TCGA-D7-6526 
"DEL PEAK 28(12P13.2) WILD-TYPE" "DEL PEAK 28(12P13.2) WILD-TYPE" 
                    TCGA-D7-6527                     TCGA-D7-6528 
"DEL PEAK 28(12P13.2) WILD-TYPE"   "DEL PEAK 28(12P13.2) MUTATED" 
                    TCGA-D7-6815                     TCGA-D7-6817 
"DEL PEAK 28(12P13.2) WILD-TYPE"   "DEL PEAK 28(12P13.2) MUTATED" 
                    TCGA-D7-6818                     TCGA-D7-6820 
"DEL PEAK 28(12P13.2) WILD-TYPE" "DEL PEAK 28(12P13.2) WILD-TYPE" 
                    TCGA-D7-6822                     TCGA-EQ-5647 
  "DEL PEAK 28(12P13.2) MUTATED"   "DEL PEAK 28(12P13.2) MUTATED" 
                    TCGA-EQ-8122                     TCGA-F1-6177 
"DEL PEAK 28(12P13.2) WILD-TYPE" "DEL PEAK 28(12P13.2) WILD-TYPE" 
                    TCGA-F1-6874                     TCGA-F1-6875 
"DEL PEAK 28(12P13.2) WILD-TYPE"   "DEL PEAK 28(12P13.2) MUTATED" 
                    TCGA-FP-7735                     TCGA-FP-7829 
"DEL PEAK 28(12P13.2) WILD-TYPE" "DEL PEAK 28(12P13.2) WILD-TYPE" 
                    TCGA-FP-7916                     TCGA-FP-7998 
"DEL PEAK 28(12P13.2) WILD-TYPE" "DEL PEAK 28(12P13.2) WILD-TYPE" 
                    TCGA-HJ-7597                     TCGA-IN-7806 
"DEL PEAK 28(12P13.2) WILD-TYPE" "DEL PEAK 28(12P13.2) WILD-TYPE" 
                    TCGA-IN-7808                     TCGA-IP-7968 
"DEL PEAK 28(12P13.2) WILD-TYPE"   "DEL PEAK 28(12P13.2) MUTATED" 
                    TCGA-B7-5816                     TCGA-B7-5818 
"DEL PEAK 28(12P13.2) WILD-TYPE" "DEL PEAK 28(12P13.2) WILD-TYPE" 
                    TCGA-BR-6452                     TCGA-BR-6455 
"DEL PEAK 28(12P13.2) WILD-TYPE" "DEL PEAK 28(12P13.2) WILD-TYPE" 
                    TCGA-BR-6457                     TCGA-BR-6458 
"DEL PEAK 28(12P13.2) WILD-TYPE"   "DEL PEAK 28(12P13.2) MUTATED" 
                    TCGA-BR-6563                     TCGA-BR-6564 
"DEL PEAK 28(12P13.2) WILD-TYPE" "DEL PEAK 28(12P13.2) WILD-TYPE" 
                    TCGA-BR-6565                     TCGA-BR-6566 
"DEL PEAK 28(12P13.2) WILD-TYPE" "DEL PEAK 28(12P13.2) WILD-TYPE" 
                    TCGA-BR-6705                     TCGA-BR-6706 
"DEL PEAK 28(12P13.2) WILD-TYPE" "DEL PEAK 28(12P13.2) WILD-TYPE" 
                    TCGA-BR-6707                     TCGA-BR-6709 
"DEL PEAK 28(12P13.2) WILD-TYPE"   "DEL PEAK 28(12P13.2) MUTATED" 
                    TCGA-BR-6710                     TCGA-BR-6801 
"DEL PEAK 28(12P13.2) WILD-TYPE" "DEL PEAK 28(12P13.2) WILD-TYPE" 
                    TCGA-BR-6802                     TCGA-BR-6803 
"DEL PEAK 28(12P13.2) WILD-TYPE" "DEL PEAK 28(12P13.2) WILD-TYPE" 
                    TCGA-BR-6852                     TCGA-BR-7196 
"DEL PEAK 28(12P13.2) WILD-TYPE" "DEL PEAK 28(12P13.2) WILD-TYPE" 
                    TCGA-BR-7197                     TCGA-BR-7703 
"DEL PEAK 28(12P13.2) WILD-TYPE" "DEL PEAK 28(12P13.2) WILD-TYPE" 
                    TCGA-BR-7704                     TCGA-BR-7707 
"DEL PEAK 28(12P13.2) WILD-TYPE" "DEL PEAK 28(12P13.2) WILD-TYPE" 
                    TCGA-BR-7715                     TCGA-BR-7716 
  "DEL PEAK 28(12P13.2) MUTATED" "DEL PEAK 28(12P13.2) WILD-TYPE" 
                    TCGA-BR-7717                     TCGA-BR-7722 
"DEL PEAK 28(12P13.2) WILD-TYPE" "DEL PEAK 28(12P13.2) WILD-TYPE" 
                    TCGA-BR-7723                     TCGA-BR-7851 
"DEL PEAK 28(12P13.2) WILD-TYPE" "DEL PEAK 28(12P13.2) WILD-TYPE" 
                    TCGA-BR-7901                     TCGA-BR-7957 
  "DEL PEAK 28(12P13.2) MUTATED" "DEL PEAK 28(12P13.2) WILD-TYPE" 
                    TCGA-BR-7958                     TCGA-BR-7959 
"DEL PEAK 28(12P13.2) WILD-TYPE" "DEL PEAK 28(12P13.2) WILD-TYPE" 
                    TCGA-BR-8059                     TCGA-BR-8060 
"DEL PEAK 28(12P13.2) WILD-TYPE" "DEL PEAK 28(12P13.2) WILD-TYPE" 
                    TCGA-BR-8077                     TCGA-BR-8078 
"DEL PEAK 28(12P13.2) WILD-TYPE" "DEL PEAK 28(12P13.2) WILD-TYPE" 
                    TCGA-BR-8080                     TCGA-BR-8081 
"DEL PEAK 28(12P13.2) WILD-TYPE" "DEL PEAK 28(12P13.2) WILD-TYPE" 
                    TCGA-BR-8284                     TCGA-BR-8285 
"DEL PEAK 28(12P13.2) WILD-TYPE" "DEL PEAK 28(12P13.2) WILD-TYPE" 
                    TCGA-BR-8286                     TCGA-BR-8289 
"DEL PEAK 28(12P13.2) WILD-TYPE" "DEL PEAK 28(12P13.2) WILD-TYPE" 
                    TCGA-BR-8291                     TCGA-BR-8295 
"DEL PEAK 28(12P13.2) WILD-TYPE" "DEL PEAK 28(12P13.2) WILD-TYPE" 
                    TCGA-BR-8296                     TCGA-BR-8297 
"DEL PEAK 28(12P13.2) WILD-TYPE" "DEL PEAK 28(12P13.2) WILD-TYPE" 
                    TCGA-CD-5798                     TCGA-CD-5799 
"DEL PEAK 28(12P13.2) WILD-TYPE" "DEL PEAK 28(12P13.2) WILD-TYPE" 
                    TCGA-CD-5800                     TCGA-CD-5801 
  "DEL PEAK 28(12P13.2) MUTATED" "DEL PEAK 28(12P13.2) WILD-TYPE" 
                    TCGA-CD-5802                     TCGA-CD-5803 
"DEL PEAK 28(12P13.2) WILD-TYPE" "DEL PEAK 28(12P13.2) WILD-TYPE" 
                    TCGA-CG-4300                     TCGA-CG-4301 
"DEL PEAK 28(12P13.2) WILD-TYPE"   "DEL PEAK 28(12P13.2) MUTATED" 
                    TCGA-CG-4304                     TCGA-CG-4305 
"DEL PEAK 28(12P13.2) WILD-TYPE" "DEL PEAK 28(12P13.2) WILD-TYPE" 
                    TCGA-CG-4306                     TCGA-CG-4436 
"DEL PEAK 28(12P13.2) WILD-TYPE"   "DEL PEAK 28(12P13.2) MUTATED" 
                    TCGA-CG-4437                     TCGA-CG-4438 
"DEL PEAK 28(12P13.2) WILD-TYPE" "DEL PEAK 28(12P13.2) WILD-TYPE" 
                    TCGA-CG-4440                     TCGA-CG-4441 
"DEL PEAK 28(12P13.2) WILD-TYPE" "DEL PEAK 28(12P13.2) WILD-TYPE" 
                    TCGA-CG-4443                     TCGA-CG-4444 
"DEL PEAK 28(12P13.2) WILD-TYPE" "DEL PEAK 28(12P13.2) WILD-TYPE" 
                    TCGA-CG-4449                     TCGA-CG-4455 
"DEL PEAK 28(12P13.2) WILD-TYPE" "DEL PEAK 28(12P13.2) WILD-TYPE" 
                    TCGA-CG-4460                     TCGA-CG-4462 
"DEL PEAK 28(12P13.2) WILD-TYPE" "DEL PEAK 28(12P13.2) WILD-TYPE" 
                    TCGA-CG-4465                     TCGA-CG-4466 
"DEL PEAK 28(12P13.2) WILD-TYPE" "DEL PEAK 28(12P13.2) WILD-TYPE" 
                    TCGA-CG-4469                     TCGA-CG-4472 
"DEL PEAK 28(12P13.2) WILD-TYPE" "DEL PEAK 28(12P13.2) WILD-TYPE" 
                    TCGA-CG-4474                     TCGA-CG-4477 
"DEL PEAK 28(12P13.2) WILD-TYPE" "DEL PEAK 28(12P13.2) WILD-TYPE" 
                    TCGA-CG-5716                     TCGA-CG-5717 
"DEL PEAK 28(12P13.2) WILD-TYPE" "DEL PEAK 28(12P13.2) WILD-TYPE" 
                    TCGA-CG-5718                     TCGA-CG-5719 
"DEL PEAK 28(12P13.2) WILD-TYPE" "DEL PEAK 28(12P13.2) WILD-TYPE" 
                    TCGA-CG-5720                     TCGA-CG-5721 
"DEL PEAK 28(12P13.2) WILD-TYPE" "DEL PEAK 28(12P13.2) WILD-TYPE" 
                    TCGA-CG-5722                     TCGA-CG-5723 
"DEL PEAK 28(12P13.2) WILD-TYPE" "DEL PEAK 28(12P13.2) WILD-TYPE" 
                    TCGA-CG-5724                     TCGA-CG-5725 
"DEL PEAK 28(12P13.2) WILD-TYPE"   "DEL PEAK 28(12P13.2) MUTATED" 
                    TCGA-CG-5726                     TCGA-CG-5727 
"DEL PEAK 28(12P13.2) WILD-TYPE" "DEL PEAK 28(12P13.2) WILD-TYPE" 
                    TCGA-CG-5728                     TCGA-CG-5730 
"DEL PEAK 28(12P13.2) WILD-TYPE" "DEL PEAK 28(12P13.2) WILD-TYPE" 
                    TCGA-CG-5732                     TCGA-CG-5733 
  "DEL PEAK 28(12P13.2) MUTATED" "DEL PEAK 28(12P13.2) WILD-TYPE" 
                    TCGA-CG-5734                     TCGA-D7-5577 
"DEL PEAK 28(12P13.2) WILD-TYPE" "DEL PEAK 28(12P13.2) WILD-TYPE" 
                    TCGA-D7-5578                     TCGA-D7-5579 
"DEL PEAK 28(12P13.2) WILD-TYPE"   "DEL PEAK 28(12P13.2) MUTATED" 
                    TCGA-D7-6518                     TCGA-D7-6519 
"DEL PEAK 28(12P13.2) WILD-TYPE"   "DEL PEAK 28(12P13.2) MUTATED" 
                    TCGA-D7-6520                     TCGA-D7-6521 
"DEL PEAK 28(12P13.2) WILD-TYPE" "DEL PEAK 28(12P13.2) WILD-TYPE" 
                    TCGA-D7-6522                     TCGA-D7-6524 
"DEL PEAK 28(12P13.2) WILD-TYPE" "DEL PEAK 28(12P13.2) WILD-TYPE" 
                    TCGA-D7-6525                     TCGA-D7-6526 
"DEL PEAK 28(12P13.2) WILD-TYPE" "DEL PEAK 28(12P13.2) WILD-TYPE" 
                    TCGA-D7-6527                     TCGA-D7-6528 
"DEL PEAK 28(12P13.2) WILD-TYPE"   "DEL PEAK 28(12P13.2) MUTATED" 
                    TCGA-D7-6815                     TCGA-D7-6817 
"DEL PEAK 28(12P13.2) WILD-TYPE"   "DEL PEAK 28(12P13.2) MUTATED" 
                    TCGA-D7-6818                     TCGA-D7-6820 
"DEL PEAK 28(12P13.2) WILD-TYPE" "DEL PEAK 28(12P13.2) WILD-TYPE" 
                    TCGA-D7-6822                     TCGA-EQ-5647 
  "DEL PEAK 28(12P13.2) MUTATED"   "DEL PEAK 28(12P13.2) MUTATED" 
                    TCGA-EQ-8122                     TCGA-F1-6177 
"DEL PEAK 28(12P13.2) WILD-TYPE" "DEL PEAK 28(12P13.2) WILD-TYPE" 
                    TCGA-F1-6874                     TCGA-F1-6875 
"DEL PEAK 28(12P13.2) WILD-TYPE"   "DEL PEAK 28(12P13.2) MUTATED" 
                    TCGA-FP-7735                     TCGA-FP-7829 
"DEL PEAK 28(12P13.2) WILD-TYPE" "DEL PEAK 28(12P13.2) WILD-TYPE" 
                    TCGA-FP-7916                     TCGA-FP-7998 
"DEL PEAK 28(12P13.2) WILD-TYPE" "DEL PEAK 28(12P13.2) WILD-TYPE" 
                    TCGA-HJ-7597                     TCGA-IN-7806 
"DEL PEAK 28(12P13.2) WILD-TYPE" "DEL PEAK 28(12P13.2) WILD-TYPE" 
                    TCGA-IN-7808                     TCGA-IP-7968 
"DEL PEAK 28(12P13.2) WILD-TYPE"   "DEL PEAK 28(12P13.2) MUTATED" 
[1] "hr=" "1.6"
D54V2, continuous
D54V3, binary
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  DEL PEAK 28(12P13.2) MUTATED     11   13
  DEL PEAK 28(12P13.2) WILD-TYPE   54   83
        clus
vv       DEL PEAK 28(12P13.2) MUTATED DEL PEAK 28(12P13.2) WILD-TYPE
  FEMALE                           11                             54
  MALE                             13                             83
D54V4, multiclass
D54V5, multiclass
    clus
vv   DEL PEAK 28(12P13.2) MUTATED DEL PEAK 28(12P13.2) WILD-TYPE
  T1                            0                              6
  T2                           10                             43
  T3                           10                             49
  T4                            2                             31
D54V6, multiclass
    clus
vv   DEL PEAK 28(12P13.2) MUTATED DEL PEAK 28(12P13.2) WILD-TYPE
  N0                            9                             41
  N1                            7                             50
  N2                            3                             21
  N3                            3                             16
D54V7, multiclass
    clus
vv   DEL PEAK 28(12P13.2) MUTATED DEL PEAK 28(12P13.2) WILD-TYPE
  M0                           20                            112
  M1                            2                             16
  MX                            2                              9
D54V8, multiclass
     clus
vv    DEL PEAK 28(12P13.2) MUTATED DEL PEAK 28(12P13.2) WILD-TYPE
  I                              7                             18
  II                             4                             39
  III                            8                             40
  IV                             3                             26
D54V9, binary
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  DEL PEAK 28(12P13.2) MUTATED     23    1
  DEL PEAK 28(12P13.2) WILD-TYPE  133    4
     clus
vv    DEL PEAK 28(12P13.2) MUTATED DEL PEAK 28(12P13.2) WILD-TYPE
  NO                             1                              4
  YES                           23                            133

Clustering(55) Variable = Del Peak 29(14q21.1) mutation analysis
D55V1, survival
                    TCGA-B7-5816                     TCGA-B7-5818 
"DEL PEAK 29(14Q21.1) WILD-TYPE" "DEL PEAK 29(14Q21.1) WILD-TYPE" 
                    TCGA-BR-6452                     TCGA-BR-6455 
"DEL PEAK 29(14Q21.1) WILD-TYPE" "DEL PEAK 29(14Q21.1) WILD-TYPE" 
                    TCGA-BR-6457                     TCGA-BR-6458 
"DEL PEAK 29(14Q21.1) WILD-TYPE"   "DEL PEAK 29(14Q21.1) MUTATED" 
                    TCGA-BR-6563                     TCGA-BR-6564 
"DEL PEAK 29(14Q21.1) WILD-TYPE"   "DEL PEAK 29(14Q21.1) MUTATED" 
                    TCGA-BR-6565                     TCGA-BR-6566 
  "DEL PEAK 29(14Q21.1) MUTATED" "DEL PEAK 29(14Q21.1) WILD-TYPE" 
                    TCGA-BR-6705                     TCGA-BR-6706 
"DEL PEAK 29(14Q21.1) WILD-TYPE" "DEL PEAK 29(14Q21.1) WILD-TYPE" 
                    TCGA-BR-6707                     TCGA-BR-6709 
"DEL PEAK 29(14Q21.1) WILD-TYPE"   "DEL PEAK 29(14Q21.1) MUTATED" 
                    TCGA-BR-6710                     TCGA-BR-6801 
"DEL PEAK 29(14Q21.1) WILD-TYPE" "DEL PEAK 29(14Q21.1) WILD-TYPE" 
                    TCGA-BR-6802                     TCGA-BR-6803 
"DEL PEAK 29(14Q21.1) WILD-TYPE"   "DEL PEAK 29(14Q21.1) MUTATED" 
                    TCGA-BR-6852                     TCGA-BR-7196 
"DEL PEAK 29(14Q21.1) WILD-TYPE" "DEL PEAK 29(14Q21.1) WILD-TYPE" 
                    TCGA-BR-7197                     TCGA-BR-7703 
"DEL PEAK 29(14Q21.1) WILD-TYPE" "DEL PEAK 29(14Q21.1) WILD-TYPE" 
                    TCGA-BR-7704                     TCGA-BR-7707 
"DEL PEAK 29(14Q21.1) WILD-TYPE" "DEL PEAK 29(14Q21.1) WILD-TYPE" 
                    TCGA-BR-7715                     TCGA-BR-7716 
  "DEL PEAK 29(14Q21.1) MUTATED"   "DEL PEAK 29(14Q21.1) MUTATED" 
                    TCGA-BR-7717                     TCGA-BR-7722 
"DEL PEAK 29(14Q21.1) WILD-TYPE" "DEL PEAK 29(14Q21.1) WILD-TYPE" 
                    TCGA-BR-7723                     TCGA-BR-7851 
  "DEL PEAK 29(14Q21.1) MUTATED" "DEL PEAK 29(14Q21.1) WILD-TYPE" 
                    TCGA-BR-7901                     TCGA-BR-7957 
"DEL PEAK 29(14Q21.1) WILD-TYPE" "DEL PEAK 29(14Q21.1) WILD-TYPE" 
                    TCGA-BR-7958                     TCGA-BR-7959 
"DEL PEAK 29(14Q21.1) WILD-TYPE" "DEL PEAK 29(14Q21.1) WILD-TYPE" 
                    TCGA-BR-8059                     TCGA-BR-8060 
"DEL PEAK 29(14Q21.1) WILD-TYPE" "DEL PEAK 29(14Q21.1) WILD-TYPE" 
                    TCGA-BR-8077                     TCGA-BR-8078 
"DEL PEAK 29(14Q21.1) WILD-TYPE" "DEL PEAK 29(14Q21.1) WILD-TYPE" 
                    TCGA-BR-8080                     TCGA-BR-8081 
"DEL PEAK 29(14Q21.1) WILD-TYPE" "DEL PEAK 29(14Q21.1) WILD-TYPE" 
                    TCGA-BR-8284                     TCGA-BR-8285 
"DEL PEAK 29(14Q21.1) WILD-TYPE" "DEL PEAK 29(14Q21.1) WILD-TYPE" 
                    TCGA-BR-8286                     TCGA-BR-8289 
"DEL PEAK 29(14Q21.1) WILD-TYPE" "DEL PEAK 29(14Q21.1) WILD-TYPE" 
                    TCGA-BR-8291                     TCGA-BR-8295 
"DEL PEAK 29(14Q21.1) WILD-TYPE" "DEL PEAK 29(14Q21.1) WILD-TYPE" 
                    TCGA-BR-8296                     TCGA-BR-8297 
"DEL PEAK 29(14Q21.1) WILD-TYPE" "DEL PEAK 29(14Q21.1) WILD-TYPE" 
                    TCGA-CD-5798                     TCGA-CD-5799 
"DEL PEAK 29(14Q21.1) WILD-TYPE" "DEL PEAK 29(14Q21.1) WILD-TYPE" 
                    TCGA-CD-5800                     TCGA-CD-5801 
  "DEL PEAK 29(14Q21.1) MUTATED"   "DEL PEAK 29(14Q21.1) MUTATED" 
                    TCGA-CD-5802                     TCGA-CD-5803 
"DEL PEAK 29(14Q21.1) WILD-TYPE"   "DEL PEAK 29(14Q21.1) MUTATED" 
                    TCGA-CG-4300                     TCGA-CG-4301 
  "DEL PEAK 29(14Q21.1) MUTATED" "DEL PEAK 29(14Q21.1) WILD-TYPE" 
                    TCGA-CG-4304                     TCGA-CG-4305 
"DEL PEAK 29(14Q21.1) WILD-TYPE" "DEL PEAK 29(14Q21.1) WILD-TYPE" 
                    TCGA-CG-4306                     TCGA-CG-4436 
"DEL PEAK 29(14Q21.1) WILD-TYPE" "DEL PEAK 29(14Q21.1) WILD-TYPE" 
                    TCGA-CG-4437                     TCGA-CG-4438 
  "DEL PEAK 29(14Q21.1) MUTATED"   "DEL PEAK 29(14Q21.1) MUTATED" 
                    TCGA-CG-4440                     TCGA-CG-4441 
  "DEL PEAK 29(14Q21.1) MUTATED" "DEL PEAK 29(14Q21.1) WILD-TYPE" 
                    TCGA-CG-4443                     TCGA-CG-4444 
"DEL PEAK 29(14Q21.1) WILD-TYPE" "DEL PEAK 29(14Q21.1) WILD-TYPE" 
                    TCGA-CG-4449                     TCGA-CG-4455 
"DEL PEAK 29(14Q21.1) WILD-TYPE" "DEL PEAK 29(14Q21.1) WILD-TYPE" 
                    TCGA-CG-4460                     TCGA-CG-4462 
"DEL PEAK 29(14Q21.1) WILD-TYPE" "DEL PEAK 29(14Q21.1) WILD-TYPE" 
                    TCGA-CG-4465                     TCGA-CG-4466 
"DEL PEAK 29(14Q21.1) WILD-TYPE" "DEL PEAK 29(14Q21.1) WILD-TYPE" 
                    TCGA-CG-4469                     TCGA-CG-4472 
"DEL PEAK 29(14Q21.1) WILD-TYPE" "DEL PEAK 29(14Q21.1) WILD-TYPE" 
                    TCGA-CG-4474                     TCGA-CG-4477 
"DEL PEAK 29(14Q21.1) WILD-TYPE"   "DEL PEAK 29(14Q21.1) MUTATED" 
                    TCGA-CG-5716                     TCGA-CG-5717 
"DEL PEAK 29(14Q21.1) WILD-TYPE" "DEL PEAK 29(14Q21.1) WILD-TYPE" 
                    TCGA-CG-5718                     TCGA-CG-5719 
"DEL PEAK 29(14Q21.1) WILD-TYPE" "DEL PEAK 29(14Q21.1) WILD-TYPE" 
                    TCGA-CG-5720                     TCGA-CG-5721 
"DEL PEAK 29(14Q21.1) WILD-TYPE" "DEL PEAK 29(14Q21.1) WILD-TYPE" 
                    TCGA-CG-5722                     TCGA-CG-5723 
"DEL PEAK 29(14Q21.1) WILD-TYPE" "DEL PEAK 29(14Q21.1) WILD-TYPE" 
                    TCGA-CG-5724                     TCGA-CG-5725 
  "DEL PEAK 29(14Q21.1) MUTATED"   "DEL PEAK 29(14Q21.1) MUTATED" 
                    TCGA-CG-5726                     TCGA-CG-5727 
"DEL PEAK 29(14Q21.1) WILD-TYPE" "DEL PEAK 29(14Q21.1) WILD-TYPE" 
                    TCGA-CG-5728                     TCGA-CG-5730 
"DEL PEAK 29(14Q21.1) WILD-TYPE" "DEL PEAK 29(14Q21.1) WILD-TYPE" 
                    TCGA-CG-5732                     TCGA-CG-5733 
"DEL PEAK 29(14Q21.1) WILD-TYPE" "DEL PEAK 29(14Q21.1) WILD-TYPE" 
                    TCGA-CG-5734                     TCGA-D7-5577 
"DEL PEAK 29(14Q21.1) WILD-TYPE" "DEL PEAK 29(14Q21.1) WILD-TYPE" 
                    TCGA-D7-5578                     TCGA-D7-5579 
"DEL PEAK 29(14Q21.1) WILD-TYPE"   "DEL PEAK 29(14Q21.1) MUTATED" 
                    TCGA-D7-6518                     TCGA-D7-6519 
"DEL PEAK 29(14Q21.1) WILD-TYPE"   "DEL PEAK 29(14Q21.1) MUTATED" 
                    TCGA-D7-6520                     TCGA-D7-6521 
"DEL PEAK 29(14Q21.1) WILD-TYPE"   "DEL PEAK 29(14Q21.1) MUTATED" 
                    TCGA-D7-6522                     TCGA-D7-6524 
"DEL PEAK 29(14Q21.1) WILD-TYPE" "DEL PEAK 29(14Q21.1) WILD-TYPE" 
                    TCGA-D7-6525                     TCGA-D7-6526 
"DEL PEAK 29(14Q21.1) WILD-TYPE"   "DEL PEAK 29(14Q21.1) MUTATED" 
                    TCGA-D7-6527                     TCGA-D7-6528 
  "DEL PEAK 29(14Q21.1) MUTATED" "DEL PEAK 29(14Q21.1) WILD-TYPE" 
                    TCGA-D7-6815                     TCGA-D7-6817 
  "DEL PEAK 29(14Q21.1) MUTATED" "DEL PEAK 29(14Q21.1) WILD-TYPE" 
                    TCGA-D7-6818                     TCGA-D7-6820 
"DEL PEAK 29(14Q21.1) WILD-TYPE" "DEL PEAK 29(14Q21.1) WILD-TYPE" 
                    TCGA-D7-6822                     TCGA-EQ-5647 
"DEL PEAK 29(14Q21.1) WILD-TYPE" "DEL PEAK 29(14Q21.1) WILD-TYPE" 
                    TCGA-EQ-8122                     TCGA-F1-6177 
  "DEL PEAK 29(14Q21.1) MUTATED" "DEL PEAK 29(14Q21.1) WILD-TYPE" 
                    TCGA-F1-6874                     TCGA-F1-6875 
"DEL PEAK 29(14Q21.1) WILD-TYPE" "DEL PEAK 29(14Q21.1) WILD-TYPE" 
                    TCGA-FP-7735                     TCGA-FP-7829 
"DEL PEAK 29(14Q21.1) WILD-TYPE" "DEL PEAK 29(14Q21.1) WILD-TYPE" 
                    TCGA-FP-7916                     TCGA-FP-7998 
  "DEL PEAK 29(14Q21.1) MUTATED" "DEL PEAK 29(14Q21.1) WILD-TYPE" 
                    TCGA-HJ-7597                     TCGA-IN-7806 
  "DEL PEAK 29(14Q21.1) MUTATED"   "DEL PEAK 29(14Q21.1) MUTATED" 
                    TCGA-IN-7808                     TCGA-IP-7968 
"DEL PEAK 29(14Q21.1) WILD-TYPE"   "DEL PEAK 29(14Q21.1) MUTATED" 
                    TCGA-B7-5816                     TCGA-B7-5818 
"DEL PEAK 29(14Q21.1) WILD-TYPE" "DEL PEAK 29(14Q21.1) WILD-TYPE" 
                    TCGA-BR-6452                     TCGA-BR-6455 
"DEL PEAK 29(14Q21.1) WILD-TYPE" "DEL PEAK 29(14Q21.1) WILD-TYPE" 
                    TCGA-BR-6457                     TCGA-BR-6458 
"DEL PEAK 29(14Q21.1) WILD-TYPE"   "DEL PEAK 29(14Q21.1) MUTATED" 
                    TCGA-BR-6563                     TCGA-BR-6564 
"DEL PEAK 29(14Q21.1) WILD-TYPE"   "DEL PEAK 29(14Q21.1) MUTATED" 
                    TCGA-BR-6565                     TCGA-BR-6566 
  "DEL PEAK 29(14Q21.1) MUTATED" "DEL PEAK 29(14Q21.1) WILD-TYPE" 
                    TCGA-BR-6705                     TCGA-BR-6706 
"DEL PEAK 29(14Q21.1) WILD-TYPE" "DEL PEAK 29(14Q21.1) WILD-TYPE" 
                    TCGA-BR-6707                     TCGA-BR-6709 
"DEL PEAK 29(14Q21.1) WILD-TYPE"   "DEL PEAK 29(14Q21.1) MUTATED" 
                    TCGA-BR-6710                     TCGA-BR-6801 
"DEL PEAK 29(14Q21.1) WILD-TYPE" "DEL PEAK 29(14Q21.1) WILD-TYPE" 
                    TCGA-BR-6802                     TCGA-BR-6803 
"DEL PEAK 29(14Q21.1) WILD-TYPE"   "DEL PEAK 29(14Q21.1) MUTATED" 
                    TCGA-BR-6852                     TCGA-BR-7196 
"DEL PEAK 29(14Q21.1) WILD-TYPE" "DEL PEAK 29(14Q21.1) WILD-TYPE" 
                    TCGA-BR-7197                     TCGA-BR-7703 
"DEL PEAK 29(14Q21.1) WILD-TYPE" "DEL PEAK 29(14Q21.1) WILD-TYPE" 
                    TCGA-BR-7704                     TCGA-BR-7707 
"DEL PEAK 29(14Q21.1) WILD-TYPE" "DEL PEAK 29(14Q21.1) WILD-TYPE" 
                    TCGA-BR-7715                     TCGA-BR-7716 
  "DEL PEAK 29(14Q21.1) MUTATED"   "DEL PEAK 29(14Q21.1) MUTATED" 
                    TCGA-BR-7717                     TCGA-BR-7722 
"DEL PEAK 29(14Q21.1) WILD-TYPE" "DEL PEAK 29(14Q21.1) WILD-TYPE" 
                    TCGA-BR-7723                     TCGA-BR-7851 
  "DEL PEAK 29(14Q21.1) MUTATED" "DEL PEAK 29(14Q21.1) WILD-TYPE" 
                    TCGA-BR-7901                     TCGA-BR-7957 
"DEL PEAK 29(14Q21.1) WILD-TYPE" "DEL PEAK 29(14Q21.1) WILD-TYPE" 
                    TCGA-BR-7958                     TCGA-BR-7959 
"DEL PEAK 29(14Q21.1) WILD-TYPE" "DEL PEAK 29(14Q21.1) WILD-TYPE" 
                    TCGA-BR-8059                     TCGA-BR-8060 
"DEL PEAK 29(14Q21.1) WILD-TYPE" "DEL PEAK 29(14Q21.1) WILD-TYPE" 
                    TCGA-BR-8077                     TCGA-BR-8078 
"DEL PEAK 29(14Q21.1) WILD-TYPE" "DEL PEAK 29(14Q21.1) WILD-TYPE" 
                    TCGA-BR-8080                     TCGA-BR-8081 
"DEL PEAK 29(14Q21.1) WILD-TYPE" "DEL PEAK 29(14Q21.1) WILD-TYPE" 
                    TCGA-BR-8284                     TCGA-BR-8285 
"DEL PEAK 29(14Q21.1) WILD-TYPE" "DEL PEAK 29(14Q21.1) WILD-TYPE" 
                    TCGA-BR-8286                     TCGA-BR-8289 
"DEL PEAK 29(14Q21.1) WILD-TYPE" "DEL PEAK 29(14Q21.1) WILD-TYPE" 
                    TCGA-BR-8291                     TCGA-BR-8295 
"DEL PEAK 29(14Q21.1) WILD-TYPE" "DEL PEAK 29(14Q21.1) WILD-TYPE" 
                    TCGA-BR-8296                     TCGA-BR-8297 
"DEL PEAK 29(14Q21.1) WILD-TYPE" "DEL PEAK 29(14Q21.1) WILD-TYPE" 
                    TCGA-CD-5798                     TCGA-CD-5799 
"DEL PEAK 29(14Q21.1) WILD-TYPE" "DEL PEAK 29(14Q21.1) WILD-TYPE" 
                    TCGA-CD-5800                     TCGA-CD-5801 
  "DEL PEAK 29(14Q21.1) MUTATED"   "DEL PEAK 29(14Q21.1) MUTATED" 
                    TCGA-CD-5802                     TCGA-CD-5803 
"DEL PEAK 29(14Q21.1) WILD-TYPE"   "DEL PEAK 29(14Q21.1) MUTATED" 
                    TCGA-CG-4300                     TCGA-CG-4301 
  "DEL PEAK 29(14Q21.1) MUTATED" "DEL PEAK 29(14Q21.1) WILD-TYPE" 
                    TCGA-CG-4304                     TCGA-CG-4305 
"DEL PEAK 29(14Q21.1) WILD-TYPE" "DEL PEAK 29(14Q21.1) WILD-TYPE" 
                    TCGA-CG-4306                     TCGA-CG-4436 
"DEL PEAK 29(14Q21.1) WILD-TYPE" "DEL PEAK 29(14Q21.1) WILD-TYPE" 
                    TCGA-CG-4437                     TCGA-CG-4438 
  "DEL PEAK 29(14Q21.1) MUTATED"   "DEL PEAK 29(14Q21.1) MUTATED" 
                    TCGA-CG-4440                     TCGA-CG-4441 
  "DEL PEAK 29(14Q21.1) MUTATED" "DEL PEAK 29(14Q21.1) WILD-TYPE" 
                    TCGA-CG-4443                     TCGA-CG-4444 
"DEL PEAK 29(14Q21.1) WILD-TYPE" "DEL PEAK 29(14Q21.1) WILD-TYPE" 
                    TCGA-CG-4449                     TCGA-CG-4455 
"DEL PEAK 29(14Q21.1) WILD-TYPE" "DEL PEAK 29(14Q21.1) WILD-TYPE" 
                    TCGA-CG-4460                     TCGA-CG-4462 
"DEL PEAK 29(14Q21.1) WILD-TYPE" "DEL PEAK 29(14Q21.1) WILD-TYPE" 
                    TCGA-CG-4465                     TCGA-CG-4466 
"DEL PEAK 29(14Q21.1) WILD-TYPE" "DEL PEAK 29(14Q21.1) WILD-TYPE" 
                    TCGA-CG-4469                     TCGA-CG-4472 
"DEL PEAK 29(14Q21.1) WILD-TYPE" "DEL PEAK 29(14Q21.1) WILD-TYPE" 
                    TCGA-CG-4474                     TCGA-CG-4477 
"DEL PEAK 29(14Q21.1) WILD-TYPE"   "DEL PEAK 29(14Q21.1) MUTATED" 
                    TCGA-CG-5716                     TCGA-CG-5717 
"DEL PEAK 29(14Q21.1) WILD-TYPE" "DEL PEAK 29(14Q21.1) WILD-TYPE" 
                    TCGA-CG-5718                     TCGA-CG-5719 
"DEL PEAK 29(14Q21.1) WILD-TYPE" "DEL PEAK 29(14Q21.1) WILD-TYPE" 
                    TCGA-CG-5720                     TCGA-CG-5721 
"DEL PEAK 29(14Q21.1) WILD-TYPE" "DEL PEAK 29(14Q21.1) WILD-TYPE" 
                    TCGA-CG-5722                     TCGA-CG-5723 
"DEL PEAK 29(14Q21.1) WILD-TYPE" "DEL PEAK 29(14Q21.1) WILD-TYPE" 
                    TCGA-CG-5724                     TCGA-CG-5725 
  "DEL PEAK 29(14Q21.1) MUTATED"   "DEL PEAK 29(14Q21.1) MUTATED" 
                    TCGA-CG-5726                     TCGA-CG-5727 
"DEL PEAK 29(14Q21.1) WILD-TYPE" "DEL PEAK 29(14Q21.1) WILD-TYPE" 
                    TCGA-CG-5728                     TCGA-CG-5730 
"DEL PEAK 29(14Q21.1) WILD-TYPE" "DEL PEAK 29(14Q21.1) WILD-TYPE" 
                    TCGA-CG-5732                     TCGA-CG-5733 
"DEL PEAK 29(14Q21.1) WILD-TYPE" "DEL PEAK 29(14Q21.1) WILD-TYPE" 
                    TCGA-CG-5734                     TCGA-D7-5577 
"DEL PEAK 29(14Q21.1) WILD-TYPE" "DEL PEAK 29(14Q21.1) WILD-TYPE" 
                    TCGA-D7-5578                     TCGA-D7-5579 
"DEL PEAK 29(14Q21.1) WILD-TYPE"   "DEL PEAK 29(14Q21.1) MUTATED" 
                    TCGA-D7-6518                     TCGA-D7-6519 
"DEL PEAK 29(14Q21.1) WILD-TYPE"   "DEL PEAK 29(14Q21.1) MUTATED" 
                    TCGA-D7-6520                     TCGA-D7-6521 
"DEL PEAK 29(14Q21.1) WILD-TYPE"   "DEL PEAK 29(14Q21.1) MUTATED" 
                    TCGA-D7-6522                     TCGA-D7-6524 
"DEL PEAK 29(14Q21.1) WILD-TYPE" "DEL PEAK 29(14Q21.1) WILD-TYPE" 
                    TCGA-D7-6525                     TCGA-D7-6526 
"DEL PEAK 29(14Q21.1) WILD-TYPE"   "DEL PEAK 29(14Q21.1) MUTATED" 
                    TCGA-D7-6527                     TCGA-D7-6528 
  "DEL PEAK 29(14Q21.1) MUTATED" "DEL PEAK 29(14Q21.1) WILD-TYPE" 
                    TCGA-D7-6815                     TCGA-D7-6817 
  "DEL PEAK 29(14Q21.1) MUTATED" "DEL PEAK 29(14Q21.1) WILD-TYPE" 
                    TCGA-D7-6818                     TCGA-D7-6820 
"DEL PEAK 29(14Q21.1) WILD-TYPE" "DEL PEAK 29(14Q21.1) WILD-TYPE" 
                    TCGA-D7-6822                     TCGA-EQ-5647 
"DEL PEAK 29(14Q21.1) WILD-TYPE" "DEL PEAK 29(14Q21.1) WILD-TYPE" 
                    TCGA-EQ-8122                     TCGA-F1-6177 
  "DEL PEAK 29(14Q21.1) MUTATED" "DEL PEAK 29(14Q21.1) WILD-TYPE" 
                    TCGA-F1-6874                     TCGA-F1-6875 
"DEL PEAK 29(14Q21.1) WILD-TYPE" "DEL PEAK 29(14Q21.1) WILD-TYPE" 
                    TCGA-FP-7735                     TCGA-FP-7829 
"DEL PEAK 29(14Q21.1) WILD-TYPE" "DEL PEAK 29(14Q21.1) WILD-TYPE" 
                    TCGA-FP-7916                     TCGA-FP-7998 
  "DEL PEAK 29(14Q21.1) MUTATED" "DEL PEAK 29(14Q21.1) WILD-TYPE" 
                    TCGA-HJ-7597                     TCGA-IN-7806 
  "DEL PEAK 29(14Q21.1) MUTATED"   "DEL PEAK 29(14Q21.1) MUTATED" 
                    TCGA-IN-7808                     TCGA-IP-7968 
"DEL PEAK 29(14Q21.1) WILD-TYPE"   "DEL PEAK 29(14Q21.1) MUTATED" 
                    TCGA-B7-5816                     TCGA-B7-5818 
"DEL PEAK 29(14Q21.1) WILD-TYPE" "DEL PEAK 29(14Q21.1) WILD-TYPE" 
                    TCGA-BR-6452                     TCGA-BR-6455 
"DEL PEAK 29(14Q21.1) WILD-TYPE" "DEL PEAK 29(14Q21.1) WILD-TYPE" 
                    TCGA-BR-6457                     TCGA-BR-6458 
"DEL PEAK 29(14Q21.1) WILD-TYPE"   "DEL PEAK 29(14Q21.1) MUTATED" 
                    TCGA-BR-6563                     TCGA-BR-6564 
"DEL PEAK 29(14Q21.1) WILD-TYPE"   "DEL PEAK 29(14Q21.1) MUTATED" 
                    TCGA-BR-6565                     TCGA-BR-6566 
  "DEL PEAK 29(14Q21.1) MUTATED" "DEL PEAK 29(14Q21.1) WILD-TYPE" 
                    TCGA-BR-6705                     TCGA-BR-6706 
"DEL PEAK 29(14Q21.1) WILD-TYPE" "DEL PEAK 29(14Q21.1) WILD-TYPE" 
                    TCGA-BR-6707                     TCGA-BR-6709 
"DEL PEAK 29(14Q21.1) WILD-TYPE"   "DEL PEAK 29(14Q21.1) MUTATED" 
                    TCGA-BR-6710                     TCGA-BR-6801 
"DEL PEAK 29(14Q21.1) WILD-TYPE" "DEL PEAK 29(14Q21.1) WILD-TYPE" 
                    TCGA-BR-6802                     TCGA-BR-6803 
"DEL PEAK 29(14Q21.1) WILD-TYPE"   "DEL PEAK 29(14Q21.1) MUTATED" 
                    TCGA-BR-6852                     TCGA-BR-7196 
"DEL PEAK 29(14Q21.1) WILD-TYPE" "DEL PEAK 29(14Q21.1) WILD-TYPE" 
                    TCGA-BR-7197                     TCGA-BR-7703 
"DEL PEAK 29(14Q21.1) WILD-TYPE" "DEL PEAK 29(14Q21.1) WILD-TYPE" 
                    TCGA-BR-7704                     TCGA-BR-7707 
"DEL PEAK 29(14Q21.1) WILD-TYPE" "DEL PEAK 29(14Q21.1) WILD-TYPE" 
                    TCGA-BR-7715                     TCGA-BR-7716 
  "DEL PEAK 29(14Q21.1) MUTATED"   "DEL PEAK 29(14Q21.1) MUTATED" 
                    TCGA-BR-7717                     TCGA-BR-7722 
"DEL PEAK 29(14Q21.1) WILD-TYPE" "DEL PEAK 29(14Q21.1) WILD-TYPE" 
                    TCGA-BR-7723                     TCGA-BR-7851 
  "DEL PEAK 29(14Q21.1) MUTATED" "DEL PEAK 29(14Q21.1) WILD-TYPE" 
                    TCGA-BR-7901                     TCGA-BR-7957 
"DEL PEAK 29(14Q21.1) WILD-TYPE" "DEL PEAK 29(14Q21.1) WILD-TYPE" 
                    TCGA-BR-7958                     TCGA-BR-7959 
"DEL PEAK 29(14Q21.1) WILD-TYPE" "DEL PEAK 29(14Q21.1) WILD-TYPE" 
                    TCGA-BR-8059                     TCGA-BR-8060 
"DEL PEAK 29(14Q21.1) WILD-TYPE" "DEL PEAK 29(14Q21.1) WILD-TYPE" 
                    TCGA-BR-8077                     TCGA-BR-8078 
"DEL PEAK 29(14Q21.1) WILD-TYPE" "DEL PEAK 29(14Q21.1) WILD-TYPE" 
                    TCGA-BR-8080                     TCGA-BR-8081 
"DEL PEAK 29(14Q21.1) WILD-TYPE" "DEL PEAK 29(14Q21.1) WILD-TYPE" 
                    TCGA-BR-8284                     TCGA-BR-8285 
"DEL PEAK 29(14Q21.1) WILD-TYPE" "DEL PEAK 29(14Q21.1) WILD-TYPE" 
                    TCGA-BR-8286                     TCGA-BR-8289 
"DEL PEAK 29(14Q21.1) WILD-TYPE" "DEL PEAK 29(14Q21.1) WILD-TYPE" 
                    TCGA-BR-8291                     TCGA-BR-8295 
"DEL PEAK 29(14Q21.1) WILD-TYPE" "DEL PEAK 29(14Q21.1) WILD-TYPE" 
                    TCGA-BR-8296                     TCGA-BR-8297 
"DEL PEAK 29(14Q21.1) WILD-TYPE" "DEL PEAK 29(14Q21.1) WILD-TYPE" 
                    TCGA-CD-5798                     TCGA-CD-5799 
"DEL PEAK 29(14Q21.1) WILD-TYPE" "DEL PEAK 29(14Q21.1) WILD-TYPE" 
                    TCGA-CD-5800                     TCGA-CD-5801 
  "DEL PEAK 29(14Q21.1) MUTATED"   "DEL PEAK 29(14Q21.1) MUTATED" 
                    TCGA-CD-5802                     TCGA-CD-5803 
"DEL PEAK 29(14Q21.1) WILD-TYPE"   "DEL PEAK 29(14Q21.1) MUTATED" 
                    TCGA-CG-4300                     TCGA-CG-4301 
  "DEL PEAK 29(14Q21.1) MUTATED" "DEL PEAK 29(14Q21.1) WILD-TYPE" 
                    TCGA-CG-4304                     TCGA-CG-4305 
"DEL PEAK 29(14Q21.1) WILD-TYPE" "DEL PEAK 29(14Q21.1) WILD-TYPE" 
                    TCGA-CG-4306                     TCGA-CG-4436 
"DEL PEAK 29(14Q21.1) WILD-TYPE" "DEL PEAK 29(14Q21.1) WILD-TYPE" 
                    TCGA-CG-4437                     TCGA-CG-4438 
  "DEL PEAK 29(14Q21.1) MUTATED"   "DEL PEAK 29(14Q21.1) MUTATED" 
                    TCGA-CG-4440                     TCGA-CG-4441 
  "DEL PEAK 29(14Q21.1) MUTATED" "DEL PEAK 29(14Q21.1) WILD-TYPE" 
                    TCGA-CG-4443                     TCGA-CG-4444 
"DEL PEAK 29(14Q21.1) WILD-TYPE" "DEL PEAK 29(14Q21.1) WILD-TYPE" 
                    TCGA-CG-4449                     TCGA-CG-4455 
"DEL PEAK 29(14Q21.1) WILD-TYPE" "DEL PEAK 29(14Q21.1) WILD-TYPE" 
                    TCGA-CG-4460                     TCGA-CG-4462 
"DEL PEAK 29(14Q21.1) WILD-TYPE" "DEL PEAK 29(14Q21.1) WILD-TYPE" 
                    TCGA-CG-4465                     TCGA-CG-4466 
"DEL PEAK 29(14Q21.1) WILD-TYPE" "DEL PEAK 29(14Q21.1) WILD-TYPE" 
                    TCGA-CG-4469                     TCGA-CG-4472 
"DEL PEAK 29(14Q21.1) WILD-TYPE" "DEL PEAK 29(14Q21.1) WILD-TYPE" 
                    TCGA-CG-4474                     TCGA-CG-4477 
"DEL PEAK 29(14Q21.1) WILD-TYPE"   "DEL PEAK 29(14Q21.1) MUTATED" 
                    TCGA-CG-5716                     TCGA-CG-5717 
"DEL PEAK 29(14Q21.1) WILD-TYPE" "DEL PEAK 29(14Q21.1) WILD-TYPE" 
                    TCGA-CG-5718                     TCGA-CG-5719 
"DEL PEAK 29(14Q21.1) WILD-TYPE" "DEL PEAK 29(14Q21.1) WILD-TYPE" 
                    TCGA-CG-5720                     TCGA-CG-5721 
"DEL PEAK 29(14Q21.1) WILD-TYPE" "DEL PEAK 29(14Q21.1) WILD-TYPE" 
                    TCGA-CG-5722                     TCGA-CG-5723 
"DEL PEAK 29(14Q21.1) WILD-TYPE" "DEL PEAK 29(14Q21.1) WILD-TYPE" 
                    TCGA-CG-5724                     TCGA-CG-5725 
  "DEL PEAK 29(14Q21.1) MUTATED"   "DEL PEAK 29(14Q21.1) MUTATED" 
                    TCGA-CG-5726                     TCGA-CG-5727 
"DEL PEAK 29(14Q21.1) WILD-TYPE" "DEL PEAK 29(14Q21.1) WILD-TYPE" 
                    TCGA-CG-5728                     TCGA-CG-5730 
"DEL PEAK 29(14Q21.1) WILD-TYPE" "DEL PEAK 29(14Q21.1) WILD-TYPE" 
                    TCGA-CG-5732                     TCGA-CG-5733 
"DEL PEAK 29(14Q21.1) WILD-TYPE" "DEL PEAK 29(14Q21.1) WILD-TYPE" 
                    TCGA-CG-5734                     TCGA-D7-5577 
"DEL PEAK 29(14Q21.1) WILD-TYPE" "DEL PEAK 29(14Q21.1) WILD-TYPE" 
                    TCGA-D7-5578                     TCGA-D7-5579 
"DEL PEAK 29(14Q21.1) WILD-TYPE"   "DEL PEAK 29(14Q21.1) MUTATED" 
                    TCGA-D7-6518                     TCGA-D7-6519 
"DEL PEAK 29(14Q21.1) WILD-TYPE"   "DEL PEAK 29(14Q21.1) MUTATED" 
                    TCGA-D7-6520                     TCGA-D7-6521 
"DEL PEAK 29(14Q21.1) WILD-TYPE"   "DEL PEAK 29(14Q21.1) MUTATED" 
                    TCGA-D7-6522                     TCGA-D7-6524 
"DEL PEAK 29(14Q21.1) WILD-TYPE" "DEL PEAK 29(14Q21.1) WILD-TYPE" 
                    TCGA-D7-6525                     TCGA-D7-6526 
"DEL PEAK 29(14Q21.1) WILD-TYPE"   "DEL PEAK 29(14Q21.1) MUTATED" 
                    TCGA-D7-6527                     TCGA-D7-6528 
  "DEL PEAK 29(14Q21.1) MUTATED" "DEL PEAK 29(14Q21.1) WILD-TYPE" 
                    TCGA-D7-6815                     TCGA-D7-6817 
  "DEL PEAK 29(14Q21.1) MUTATED" "DEL PEAK 29(14Q21.1) WILD-TYPE" 
                    TCGA-D7-6818                     TCGA-D7-6820 
"DEL PEAK 29(14Q21.1) WILD-TYPE" "DEL PEAK 29(14Q21.1) WILD-TYPE" 
                    TCGA-D7-6822                     TCGA-EQ-5647 
"DEL PEAK 29(14Q21.1) WILD-TYPE" "DEL PEAK 29(14Q21.1) WILD-TYPE" 
                    TCGA-EQ-8122                     TCGA-F1-6177 
  "DEL PEAK 29(14Q21.1) MUTATED" "DEL PEAK 29(14Q21.1) WILD-TYPE" 
                    TCGA-F1-6874                     TCGA-F1-6875 
"DEL PEAK 29(14Q21.1) WILD-TYPE" "DEL PEAK 29(14Q21.1) WILD-TYPE" 
                    TCGA-FP-7735                     TCGA-FP-7829 
"DEL PEAK 29(14Q21.1) WILD-TYPE" "DEL PEAK 29(14Q21.1) WILD-TYPE" 
                    TCGA-FP-7916                     TCGA-FP-7998 
  "DEL PEAK 29(14Q21.1) MUTATED" "DEL PEAK 29(14Q21.1) WILD-TYPE" 
                    TCGA-HJ-7597                     TCGA-IN-7806 
  "DEL PEAK 29(14Q21.1) MUTATED"   "DEL PEAK 29(14Q21.1) MUTATED" 
                    TCGA-IN-7808                     TCGA-IP-7968 
"DEL PEAK 29(14Q21.1) WILD-TYPE"   "DEL PEAK 29(14Q21.1) MUTATED" 
[1] "hr=" "1.2"
D55V2, continuous
D55V3, binary
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  DEL PEAK 29(14Q21.1) MUTATED     18   18
  DEL PEAK 29(14Q21.1) WILD-TYPE   47   78
        clus
vv       DEL PEAK 29(14Q21.1) MUTATED DEL PEAK 29(14Q21.1) WILD-TYPE
  FEMALE                           18                             47
  MALE                             18                             78
D55V4, multiclass
D55V5, multiclass
    clus
vv   DEL PEAK 29(14Q21.1) MUTATED DEL PEAK 29(14Q21.1) WILD-TYPE
  T1                            0                              6
  T2                           10                             43
  T3                           20                             39
  T4                            3                             30
D55V6, multiclass
    clus
vv   DEL PEAK 29(14Q21.1) MUTATED DEL PEAK 29(14Q21.1) WILD-TYPE
  N0                            9                             41
  N1                           12                             45
  N2                            9                             15
  N3                            3                             16
D55V7, multiclass
    clus
vv   DEL PEAK 29(14Q21.1) MUTATED DEL PEAK 29(14Q21.1) WILD-TYPE
  M0                           29                            103
  M1                            2                             16
  MX                            5                              6
D55V8, multiclass
     clus
vv    DEL PEAK 29(14Q21.1) MUTATED DEL PEAK 29(14Q21.1) WILD-TYPE
  I                              4                             21
  II                            12                             31
  III                           13                             35
  IV                             4                             25
D55V9, binary
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  DEL PEAK 29(14Q21.1) MUTATED     34    2
  DEL PEAK 29(14Q21.1) WILD-TYPE  122    3
     clus
vv    DEL PEAK 29(14Q21.1) MUTATED DEL PEAK 29(14Q21.1) WILD-TYPE
  NO                             2                              3
  YES                           34                            122

Clustering(56) Variable = Del Peak 30(14q32.33) mutation analysis
D56V1, survival
                     TCGA-B7-5816                      TCGA-B7-5818 
"DEL PEAK 30(14Q32.33) WILD-TYPE"   "DEL PEAK 30(14Q32.33) MUTATED" 
                     TCGA-BR-6452                      TCGA-BR-6455 
"DEL PEAK 30(14Q32.33) WILD-TYPE" "DEL PEAK 30(14Q32.33) WILD-TYPE" 
                     TCGA-BR-6457                      TCGA-BR-6458 
"DEL PEAK 30(14Q32.33) WILD-TYPE"   "DEL PEAK 30(14Q32.33) MUTATED" 
                     TCGA-BR-6563                      TCGA-BR-6564 
"DEL PEAK 30(14Q32.33) WILD-TYPE"   "DEL PEAK 30(14Q32.33) MUTATED" 
                     TCGA-BR-6565                      TCGA-BR-6566 
  "DEL PEAK 30(14Q32.33) MUTATED" "DEL PEAK 30(14Q32.33) WILD-TYPE" 
                     TCGA-BR-6705                      TCGA-BR-6706 
"DEL PEAK 30(14Q32.33) WILD-TYPE" "DEL PEAK 30(14Q32.33) WILD-TYPE" 
                     TCGA-BR-6707                      TCGA-BR-6709 
"DEL PEAK 30(14Q32.33) WILD-TYPE"   "DEL PEAK 30(14Q32.33) MUTATED" 
                     TCGA-BR-6710                      TCGA-BR-6801 
"DEL PEAK 30(14Q32.33) WILD-TYPE" "DEL PEAK 30(14Q32.33) WILD-TYPE" 
                     TCGA-BR-6802                      TCGA-BR-6803 
"DEL PEAK 30(14Q32.33) WILD-TYPE"   "DEL PEAK 30(14Q32.33) MUTATED" 
                     TCGA-BR-6852                      TCGA-BR-7196 
"DEL PEAK 30(14Q32.33) WILD-TYPE" "DEL PEAK 30(14Q32.33) WILD-TYPE" 
                     TCGA-BR-7197                      TCGA-BR-7703 
"DEL PEAK 30(14Q32.33) WILD-TYPE" "DEL PEAK 30(14Q32.33) WILD-TYPE" 
                     TCGA-BR-7704                      TCGA-BR-7707 
"DEL PEAK 30(14Q32.33) WILD-TYPE" "DEL PEAK 30(14Q32.33) WILD-TYPE" 
                     TCGA-BR-7715                      TCGA-BR-7716 
  "DEL PEAK 30(14Q32.33) MUTATED"   "DEL PEAK 30(14Q32.33) MUTATED" 
                     TCGA-BR-7717                      TCGA-BR-7722 
"DEL PEAK 30(14Q32.33) WILD-TYPE" "DEL PEAK 30(14Q32.33) WILD-TYPE" 
                     TCGA-BR-7723                      TCGA-BR-7851 
"DEL PEAK 30(14Q32.33) WILD-TYPE" "DEL PEAK 30(14Q32.33) WILD-TYPE" 
                     TCGA-BR-7901                      TCGA-BR-7957 
"DEL PEAK 30(14Q32.33) WILD-TYPE" "DEL PEAK 30(14Q32.33) WILD-TYPE" 
                     TCGA-BR-7958                      TCGA-BR-7959 
"DEL PEAK 30(14Q32.33) WILD-TYPE" "DEL PEAK 30(14Q32.33) WILD-TYPE" 
                     TCGA-BR-8059                      TCGA-BR-8060 
"DEL PEAK 30(14Q32.33) WILD-TYPE" "DEL PEAK 30(14Q32.33) WILD-TYPE" 
                     TCGA-BR-8077                      TCGA-BR-8078 
"DEL PEAK 30(14Q32.33) WILD-TYPE" "DEL PEAK 30(14Q32.33) WILD-TYPE" 
                     TCGA-BR-8080                      TCGA-BR-8081 
"DEL PEAK 30(14Q32.33) WILD-TYPE" "DEL PEAK 30(14Q32.33) WILD-TYPE" 
                     TCGA-BR-8284                      TCGA-BR-8285 
"DEL PEAK 30(14Q32.33) WILD-TYPE" "DEL PEAK 30(14Q32.33) WILD-TYPE" 
                     TCGA-BR-8286                      TCGA-BR-8289 
"DEL PEAK 30(14Q32.33) WILD-TYPE" "DEL PEAK 30(14Q32.33) WILD-TYPE" 
                     TCGA-BR-8291                      TCGA-BR-8295 
"DEL PEAK 30(14Q32.33) WILD-TYPE" "DEL PEAK 30(14Q32.33) WILD-TYPE" 
                     TCGA-BR-8296                      TCGA-BR-8297 
"DEL PEAK 30(14Q32.33) WILD-TYPE" "DEL PEAK 30(14Q32.33) WILD-TYPE" 
                     TCGA-CD-5798                      TCGA-CD-5799 
"DEL PEAK 30(14Q32.33) WILD-TYPE" "DEL PEAK 30(14Q32.33) WILD-TYPE" 
                     TCGA-CD-5800                      TCGA-CD-5801 
"DEL PEAK 30(14Q32.33) WILD-TYPE"   "DEL PEAK 30(14Q32.33) MUTATED" 
                     TCGA-CD-5802                      TCGA-CD-5803 
"DEL PEAK 30(14Q32.33) WILD-TYPE"   "DEL PEAK 30(14Q32.33) MUTATED" 
                     TCGA-CG-4300                      TCGA-CG-4301 
  "DEL PEAK 30(14Q32.33) MUTATED" "DEL PEAK 30(14Q32.33) WILD-TYPE" 
                     TCGA-CG-4304                      TCGA-CG-4305 
"DEL PEAK 30(14Q32.33) WILD-TYPE" "DEL PEAK 30(14Q32.33) WILD-TYPE" 
                     TCGA-CG-4306                      TCGA-CG-4436 
"DEL PEAK 30(14Q32.33) WILD-TYPE"   "DEL PEAK 30(14Q32.33) MUTATED" 
                     TCGA-CG-4437                      TCGA-CG-4438 
"DEL PEAK 30(14Q32.33) WILD-TYPE"   "DEL PEAK 30(14Q32.33) MUTATED" 
                     TCGA-CG-4440                      TCGA-CG-4441 
"DEL PEAK 30(14Q32.33) WILD-TYPE" "DEL PEAK 30(14Q32.33) WILD-TYPE" 
                     TCGA-CG-4443                      TCGA-CG-4444 
  "DEL PEAK 30(14Q32.33) MUTATED"   "DEL PEAK 30(14Q32.33) MUTATED" 
                     TCGA-CG-4449                      TCGA-CG-4455 
  "DEL PEAK 30(14Q32.33) MUTATED" "DEL PEAK 30(14Q32.33) WILD-TYPE" 
                     TCGA-CG-4460                      TCGA-CG-4462 
"DEL PEAK 30(14Q32.33) WILD-TYPE" "DEL PEAK 30(14Q32.33) WILD-TYPE" 
                     TCGA-CG-4465                      TCGA-CG-4466 
"DEL PEAK 30(14Q32.33) WILD-TYPE" "DEL PEAK 30(14Q32.33) WILD-TYPE" 
                     TCGA-CG-4469                      TCGA-CG-4472 
"DEL PEAK 30(14Q32.33) WILD-TYPE" "DEL PEAK 30(14Q32.33) WILD-TYPE" 
                     TCGA-CG-4474                      TCGA-CG-4477 
"DEL PEAK 30(14Q32.33) WILD-TYPE"   "DEL PEAK 30(14Q32.33) MUTATED" 
                     TCGA-CG-5716                      TCGA-CG-5717 
"DEL PEAK 30(14Q32.33) WILD-TYPE" "DEL PEAK 30(14Q32.33) WILD-TYPE" 
                     TCGA-CG-5718                      TCGA-CG-5719 
"DEL PEAK 30(14Q32.33) WILD-TYPE" "DEL PEAK 30(14Q32.33) WILD-TYPE" 
                     TCGA-CG-5720                      TCGA-CG-5721 
"DEL PEAK 30(14Q32.33) WILD-TYPE" "DEL PEAK 30(14Q32.33) WILD-TYPE" 
                     TCGA-CG-5722                      TCGA-CG-5723 
"DEL PEAK 30(14Q32.33) WILD-TYPE" "DEL PEAK 30(14Q32.33) WILD-TYPE" 
                     TCGA-CG-5724                      TCGA-CG-5725 
"DEL PEAK 30(14Q32.33) WILD-TYPE" "DEL PEAK 30(14Q32.33) WILD-TYPE" 
                     TCGA-CG-5726                      TCGA-CG-5727 
"DEL PEAK 30(14Q32.33) WILD-TYPE" "DEL PEAK 30(14Q32.33) WILD-TYPE" 
                     TCGA-CG-5728                      TCGA-CG-5730 
"DEL PEAK 30(14Q32.33) WILD-TYPE" "DEL PEAK 30(14Q32.33) WILD-TYPE" 
                     TCGA-CG-5732                      TCGA-CG-5733 
"DEL PEAK 30(14Q32.33) WILD-TYPE"   "DEL PEAK 30(14Q32.33) MUTATED" 
                     TCGA-CG-5734                      TCGA-D7-5577 
"DEL PEAK 30(14Q32.33) WILD-TYPE" "DEL PEAK 30(14Q32.33) WILD-TYPE" 
                     TCGA-D7-5578                      TCGA-D7-5579 
"DEL PEAK 30(14Q32.33) WILD-TYPE" "DEL PEAK 30(14Q32.33) WILD-TYPE" 
                     TCGA-D7-6518                      TCGA-D7-6519 
"DEL PEAK 30(14Q32.33) WILD-TYPE"   "DEL PEAK 30(14Q32.33) MUTATED" 
                     TCGA-D7-6520                      TCGA-D7-6521 
  "DEL PEAK 30(14Q32.33) MUTATED"   "DEL PEAK 30(14Q32.33) MUTATED" 
                     TCGA-D7-6522                      TCGA-D7-6524 
"DEL PEAK 30(14Q32.33) WILD-TYPE" "DEL PEAK 30(14Q32.33) WILD-TYPE" 
                     TCGA-D7-6525                      TCGA-D7-6526 
  "DEL PEAK 30(14Q32.33) MUTATED" "DEL PEAK 30(14Q32.33) WILD-TYPE" 
                     TCGA-D7-6527                      TCGA-D7-6528 
  "DEL PEAK 30(14Q32.33) MUTATED" "DEL PEAK 30(14Q32.33) WILD-TYPE" 
                     TCGA-D7-6815                      TCGA-D7-6817 
  "DEL PEAK 30(14Q32.33) MUTATED" "DEL PEAK 30(14Q32.33) WILD-TYPE" 
                     TCGA-D7-6818                      TCGA-D7-6820 
"DEL PEAK 30(14Q32.33) WILD-TYPE" "DEL PEAK 30(14Q32.33) WILD-TYPE" 
                     TCGA-D7-6822                      TCGA-EQ-5647 
  "DEL PEAK 30(14Q32.33) MUTATED" "DEL PEAK 30(14Q32.33) WILD-TYPE" 
                     TCGA-EQ-8122                      TCGA-F1-6177 
  "DEL PEAK 30(14Q32.33) MUTATED" "DEL PEAK 30(14Q32.33) WILD-TYPE" 
                     TCGA-F1-6874                      TCGA-F1-6875 
"DEL PEAK 30(14Q32.33) WILD-TYPE" "DEL PEAK 30(14Q32.33) WILD-TYPE" 
                     TCGA-FP-7735                      TCGA-FP-7829 
"DEL PEAK 30(14Q32.33) WILD-TYPE" "DEL PEAK 30(14Q32.33) WILD-TYPE" 
                     TCGA-FP-7916                      TCGA-FP-7998 
  "DEL PEAK 30(14Q32.33) MUTATED" "DEL PEAK 30(14Q32.33) WILD-TYPE" 
                     TCGA-HJ-7597                      TCGA-IN-7806 
  "DEL PEAK 30(14Q32.33) MUTATED"   "DEL PEAK 30(14Q32.33) MUTATED" 
                     TCGA-IN-7808                      TCGA-IP-7968 
"DEL PEAK 30(14Q32.33) WILD-TYPE"   "DEL PEAK 30(14Q32.33) MUTATED" 
                     TCGA-B7-5816                      TCGA-B7-5818 
"DEL PEAK 30(14Q32.33) WILD-TYPE"   "DEL PEAK 30(14Q32.33) MUTATED" 
                     TCGA-BR-6452                      TCGA-BR-6455 
"DEL PEAK 30(14Q32.33) WILD-TYPE" "DEL PEAK 30(14Q32.33) WILD-TYPE" 
                     TCGA-BR-6457                      TCGA-BR-6458 
"DEL PEAK 30(14Q32.33) WILD-TYPE"   "DEL PEAK 30(14Q32.33) MUTATED" 
                     TCGA-BR-6563                      TCGA-BR-6564 
"DEL PEAK 30(14Q32.33) WILD-TYPE"   "DEL PEAK 30(14Q32.33) MUTATED" 
                     TCGA-BR-6565                      TCGA-BR-6566 
  "DEL PEAK 30(14Q32.33) MUTATED" "DEL PEAK 30(14Q32.33) WILD-TYPE" 
                     TCGA-BR-6705                      TCGA-BR-6706 
"DEL PEAK 30(14Q32.33) WILD-TYPE" "DEL PEAK 30(14Q32.33) WILD-TYPE" 
                     TCGA-BR-6707                      TCGA-BR-6709 
"DEL PEAK 30(14Q32.33) WILD-TYPE"   "DEL PEAK 30(14Q32.33) MUTATED" 
                     TCGA-BR-6710                      TCGA-BR-6801 
"DEL PEAK 30(14Q32.33) WILD-TYPE" "DEL PEAK 30(14Q32.33) WILD-TYPE" 
                     TCGA-BR-6802                      TCGA-BR-6803 
"DEL PEAK 30(14Q32.33) WILD-TYPE"   "DEL PEAK 30(14Q32.33) MUTATED" 
                     TCGA-BR-6852                      TCGA-BR-7196 
"DEL PEAK 30(14Q32.33) WILD-TYPE" "DEL PEAK 30(14Q32.33) WILD-TYPE" 
                     TCGA-BR-7197                      TCGA-BR-7703 
"DEL PEAK 30(14Q32.33) WILD-TYPE" "DEL PEAK 30(14Q32.33) WILD-TYPE" 
                     TCGA-BR-7704                      TCGA-BR-7707 
"DEL PEAK 30(14Q32.33) WILD-TYPE" "DEL PEAK 30(14Q32.33) WILD-TYPE" 
                     TCGA-BR-7715                      TCGA-BR-7716 
  "DEL PEAK 30(14Q32.33) MUTATED"   "DEL PEAK 30(14Q32.33) MUTATED" 
                     TCGA-BR-7717                      TCGA-BR-7722 
"DEL PEAK 30(14Q32.33) WILD-TYPE" "DEL PEAK 30(14Q32.33) WILD-TYPE" 
                     TCGA-BR-7723                      TCGA-BR-7851 
"DEL PEAK 30(14Q32.33) WILD-TYPE" "DEL PEAK 30(14Q32.33) WILD-TYPE" 
                     TCGA-BR-7901                      TCGA-BR-7957 
"DEL PEAK 30(14Q32.33) WILD-TYPE" "DEL PEAK 30(14Q32.33) WILD-TYPE" 
                     TCGA-BR-7958                      TCGA-BR-7959 
"DEL PEAK 30(14Q32.33) WILD-TYPE" "DEL PEAK 30(14Q32.33) WILD-TYPE" 
                     TCGA-BR-8059                      TCGA-BR-8060 
"DEL PEAK 30(14Q32.33) WILD-TYPE" "DEL PEAK 30(14Q32.33) WILD-TYPE" 
                     TCGA-BR-8077                      TCGA-BR-8078 
"DEL PEAK 30(14Q32.33) WILD-TYPE" "DEL PEAK 30(14Q32.33) WILD-TYPE" 
                     TCGA-BR-8080                      TCGA-BR-8081 
"DEL PEAK 30(14Q32.33) WILD-TYPE" "DEL PEAK 30(14Q32.33) WILD-TYPE" 
                     TCGA-BR-8284                      TCGA-BR-8285 
"DEL PEAK 30(14Q32.33) WILD-TYPE" "DEL PEAK 30(14Q32.33) WILD-TYPE" 
                     TCGA-BR-8286                      TCGA-BR-8289 
"DEL PEAK 30(14Q32.33) WILD-TYPE" "DEL PEAK 30(14Q32.33) WILD-TYPE" 
                     TCGA-BR-8291                      TCGA-BR-8295 
"DEL PEAK 30(14Q32.33) WILD-TYPE" "DEL PEAK 30(14Q32.33) WILD-TYPE" 
                     TCGA-BR-8296                      TCGA-BR-8297 
"DEL PEAK 30(14Q32.33) WILD-TYPE" "DEL PEAK 30(14Q32.33) WILD-TYPE" 
                     TCGA-CD-5798                      TCGA-CD-5799 
"DEL PEAK 30(14Q32.33) WILD-TYPE" "DEL PEAK 30(14Q32.33) WILD-TYPE" 
                     TCGA-CD-5800                      TCGA-CD-5801 
"DEL PEAK 30(14Q32.33) WILD-TYPE"   "DEL PEAK 30(14Q32.33) MUTATED" 
                     TCGA-CD-5802                      TCGA-CD-5803 
"DEL PEAK 30(14Q32.33) WILD-TYPE"   "DEL PEAK 30(14Q32.33) MUTATED" 
                     TCGA-CG-4300                      TCGA-CG-4301 
  "DEL PEAK 30(14Q32.33) MUTATED" "DEL PEAK 30(14Q32.33) WILD-TYPE" 
                     TCGA-CG-4304                      TCGA-CG-4305 
"DEL PEAK 30(14Q32.33) WILD-TYPE" "DEL PEAK 30(14Q32.33) WILD-TYPE" 
                     TCGA-CG-4306                      TCGA-CG-4436 
"DEL PEAK 30(14Q32.33) WILD-TYPE"   "DEL PEAK 30(14Q32.33) MUTATED" 
                     TCGA-CG-4437                      TCGA-CG-4438 
"DEL PEAK 30(14Q32.33) WILD-TYPE"   "DEL PEAK 30(14Q32.33) MUTATED" 
                     TCGA-CG-4440                      TCGA-CG-4441 
"DEL PEAK 30(14Q32.33) WILD-TYPE" "DEL PEAK 30(14Q32.33) WILD-TYPE" 
                     TCGA-CG-4443                      TCGA-CG-4444 
  "DEL PEAK 30(14Q32.33) MUTATED"   "DEL PEAK 30(14Q32.33) MUTATED" 
                     TCGA-CG-4449                      TCGA-CG-4455 
  "DEL PEAK 30(14Q32.33) MUTATED" "DEL PEAK 30(14Q32.33) WILD-TYPE" 
                     TCGA-CG-4460                      TCGA-CG-4462 
"DEL PEAK 30(14Q32.33) WILD-TYPE" "DEL PEAK 30(14Q32.33) WILD-TYPE" 
                     TCGA-CG-4465                      TCGA-CG-4466 
"DEL PEAK 30(14Q32.33) WILD-TYPE" "DEL PEAK 30(14Q32.33) WILD-TYPE" 
                     TCGA-CG-4469                      TCGA-CG-4472 
"DEL PEAK 30(14Q32.33) WILD-TYPE" "DEL PEAK 30(14Q32.33) WILD-TYPE" 
                     TCGA-CG-4474                      TCGA-CG-4477 
"DEL PEAK 30(14Q32.33) WILD-TYPE"   "DEL PEAK 30(14Q32.33) MUTATED" 
                     TCGA-CG-5716                      TCGA-CG-5717 
"DEL PEAK 30(14Q32.33) WILD-TYPE" "DEL PEAK 30(14Q32.33) WILD-TYPE" 
                     TCGA-CG-5718                      TCGA-CG-5719 
"DEL PEAK 30(14Q32.33) WILD-TYPE" "DEL PEAK 30(14Q32.33) WILD-TYPE" 
                     TCGA-CG-5720                      TCGA-CG-5721 
"DEL PEAK 30(14Q32.33) WILD-TYPE" "DEL PEAK 30(14Q32.33) WILD-TYPE" 
                     TCGA-CG-5722                      TCGA-CG-5723 
"DEL PEAK 30(14Q32.33) WILD-TYPE" "DEL PEAK 30(14Q32.33) WILD-TYPE" 
                     TCGA-CG-5724                      TCGA-CG-5725 
"DEL PEAK 30(14Q32.33) WILD-TYPE" "DEL PEAK 30(14Q32.33) WILD-TYPE" 
                     TCGA-CG-5726                      TCGA-CG-5727 
"DEL PEAK 30(14Q32.33) WILD-TYPE" "DEL PEAK 30(14Q32.33) WILD-TYPE" 
                     TCGA-CG-5728                      TCGA-CG-5730 
"DEL PEAK 30(14Q32.33) WILD-TYPE" "DEL PEAK 30(14Q32.33) WILD-TYPE" 
                     TCGA-CG-5732                      TCGA-CG-5733 
"DEL PEAK 30(14Q32.33) WILD-TYPE"   "DEL PEAK 30(14Q32.33) MUTATED" 
                     TCGA-CG-5734                      TCGA-D7-5577 
"DEL PEAK 30(14Q32.33) WILD-TYPE" "DEL PEAK 30(14Q32.33) WILD-TYPE" 
                     TCGA-D7-5578                      TCGA-D7-5579 
"DEL PEAK 30(14Q32.33) WILD-TYPE" "DEL PEAK 30(14Q32.33) WILD-TYPE" 
                     TCGA-D7-6518                      TCGA-D7-6519 
"DEL PEAK 30(14Q32.33) WILD-TYPE"   "DEL PEAK 30(14Q32.33) MUTATED" 
                     TCGA-D7-6520                      TCGA-D7-6521 
  "DEL PEAK 30(14Q32.33) MUTATED"   "DEL PEAK 30(14Q32.33) MUTATED" 
                     TCGA-D7-6522                      TCGA-D7-6524 
"DEL PEAK 30(14Q32.33) WILD-TYPE" "DEL PEAK 30(14Q32.33) WILD-TYPE" 
                     TCGA-D7-6525                      TCGA-D7-6526 
  "DEL PEAK 30(14Q32.33) MUTATED" "DEL PEAK 30(14Q32.33) WILD-TYPE" 
                     TCGA-D7-6527                      TCGA-D7-6528 
  "DEL PEAK 30(14Q32.33) MUTATED" "DEL PEAK 30(14Q32.33) WILD-TYPE" 
                     TCGA-D7-6815                      TCGA-D7-6817 
  "DEL PEAK 30(14Q32.33) MUTATED" "DEL PEAK 30(14Q32.33) WILD-TYPE" 
                     TCGA-D7-6818                      TCGA-D7-6820 
"DEL PEAK 30(14Q32.33) WILD-TYPE" "DEL PEAK 30(14Q32.33) WILD-TYPE" 
                     TCGA-D7-6822                      TCGA-EQ-5647 
  "DEL PEAK 30(14Q32.33) MUTATED" "DEL PEAK 30(14Q32.33) WILD-TYPE" 
                     TCGA-EQ-8122                      TCGA-F1-6177 
  "DEL PEAK 30(14Q32.33) MUTATED" "DEL PEAK 30(14Q32.33) WILD-TYPE" 
                     TCGA-F1-6874                      TCGA-F1-6875 
"DEL PEAK 30(14Q32.33) WILD-TYPE" "DEL PEAK 30(14Q32.33) WILD-TYPE" 
                     TCGA-FP-7735                      TCGA-FP-7829 
"DEL PEAK 30(14Q32.33) WILD-TYPE" "DEL PEAK 30(14Q32.33) WILD-TYPE" 
                     TCGA-FP-7916                      TCGA-FP-7998 
  "DEL PEAK 30(14Q32.33) MUTATED" "DEL PEAK 30(14Q32.33) WILD-TYPE" 
                     TCGA-HJ-7597                      TCGA-IN-7806 
  "DEL PEAK 30(14Q32.33) MUTATED"   "DEL PEAK 30(14Q32.33) MUTATED" 
                     TCGA-IN-7808                      TCGA-IP-7968 
"DEL PEAK 30(14Q32.33) WILD-TYPE"   "DEL PEAK 30(14Q32.33) MUTATED" 
                     TCGA-B7-5816                      TCGA-B7-5818 
"DEL PEAK 30(14Q32.33) WILD-TYPE"   "DEL PEAK 30(14Q32.33) MUTATED" 
                     TCGA-BR-6452                      TCGA-BR-6455 
"DEL PEAK 30(14Q32.33) WILD-TYPE" "DEL PEAK 30(14Q32.33) WILD-TYPE" 
                     TCGA-BR-6457                      TCGA-BR-6458 
"DEL PEAK 30(14Q32.33) WILD-TYPE"   "DEL PEAK 30(14Q32.33) MUTATED" 
                     TCGA-BR-6563                      TCGA-BR-6564 
"DEL PEAK 30(14Q32.33) WILD-TYPE"   "DEL PEAK 30(14Q32.33) MUTATED" 
                     TCGA-BR-6565                      TCGA-BR-6566 
  "DEL PEAK 30(14Q32.33) MUTATED" "DEL PEAK 30(14Q32.33) WILD-TYPE" 
                     TCGA-BR-6705                      TCGA-BR-6706 
"DEL PEAK 30(14Q32.33) WILD-TYPE" "DEL PEAK 30(14Q32.33) WILD-TYPE" 
                     TCGA-BR-6707                      TCGA-BR-6709 
"DEL PEAK 30(14Q32.33) WILD-TYPE"   "DEL PEAK 30(14Q32.33) MUTATED" 
                     TCGA-BR-6710                      TCGA-BR-6801 
"DEL PEAK 30(14Q32.33) WILD-TYPE" "DEL PEAK 30(14Q32.33) WILD-TYPE" 
                     TCGA-BR-6802                      TCGA-BR-6803 
"DEL PEAK 30(14Q32.33) WILD-TYPE"   "DEL PEAK 30(14Q32.33) MUTATED" 
                     TCGA-BR-6852                      TCGA-BR-7196 
"DEL PEAK 30(14Q32.33) WILD-TYPE" "DEL PEAK 30(14Q32.33) WILD-TYPE" 
                     TCGA-BR-7197                      TCGA-BR-7703 
"DEL PEAK 30(14Q32.33) WILD-TYPE" "DEL PEAK 30(14Q32.33) WILD-TYPE" 
                     TCGA-BR-7704                      TCGA-BR-7707 
"DEL PEAK 30(14Q32.33) WILD-TYPE" "DEL PEAK 30(14Q32.33) WILD-TYPE" 
                     TCGA-BR-7715                      TCGA-BR-7716 
  "DEL PEAK 30(14Q32.33) MUTATED"   "DEL PEAK 30(14Q32.33) MUTATED" 
                     TCGA-BR-7717                      TCGA-BR-7722 
"DEL PEAK 30(14Q32.33) WILD-TYPE" "DEL PEAK 30(14Q32.33) WILD-TYPE" 
                     TCGA-BR-7723                      TCGA-BR-7851 
"DEL PEAK 30(14Q32.33) WILD-TYPE" "DEL PEAK 30(14Q32.33) WILD-TYPE" 
                     TCGA-BR-7901                      TCGA-BR-7957 
"DEL PEAK 30(14Q32.33) WILD-TYPE" "DEL PEAK 30(14Q32.33) WILD-TYPE" 
                     TCGA-BR-7958                      TCGA-BR-7959 
"DEL PEAK 30(14Q32.33) WILD-TYPE" "DEL PEAK 30(14Q32.33) WILD-TYPE" 
                     TCGA-BR-8059                      TCGA-BR-8060 
"DEL PEAK 30(14Q32.33) WILD-TYPE" "DEL PEAK 30(14Q32.33) WILD-TYPE" 
                     TCGA-BR-8077                      TCGA-BR-8078 
"DEL PEAK 30(14Q32.33) WILD-TYPE" "DEL PEAK 30(14Q32.33) WILD-TYPE" 
                     TCGA-BR-8080                      TCGA-BR-8081 
"DEL PEAK 30(14Q32.33) WILD-TYPE" "DEL PEAK 30(14Q32.33) WILD-TYPE" 
                     TCGA-BR-8284                      TCGA-BR-8285 
"DEL PEAK 30(14Q32.33) WILD-TYPE" "DEL PEAK 30(14Q32.33) WILD-TYPE" 
                     TCGA-BR-8286                      TCGA-BR-8289 
"DEL PEAK 30(14Q32.33) WILD-TYPE" "DEL PEAK 30(14Q32.33) WILD-TYPE" 
                     TCGA-BR-8291                      TCGA-BR-8295 
"DEL PEAK 30(14Q32.33) WILD-TYPE" "DEL PEAK 30(14Q32.33) WILD-TYPE" 
                     TCGA-BR-8296                      TCGA-BR-8297 
"DEL PEAK 30(14Q32.33) WILD-TYPE" "DEL PEAK 30(14Q32.33) WILD-TYPE" 
                     TCGA-CD-5798                      TCGA-CD-5799 
"DEL PEAK 30(14Q32.33) WILD-TYPE" "DEL PEAK 30(14Q32.33) WILD-TYPE" 
                     TCGA-CD-5800                      TCGA-CD-5801 
"DEL PEAK 30(14Q32.33) WILD-TYPE"   "DEL PEAK 30(14Q32.33) MUTATED" 
                     TCGA-CD-5802                      TCGA-CD-5803 
"DEL PEAK 30(14Q32.33) WILD-TYPE"   "DEL PEAK 30(14Q32.33) MUTATED" 
                     TCGA-CG-4300                      TCGA-CG-4301 
  "DEL PEAK 30(14Q32.33) MUTATED" "DEL PEAK 30(14Q32.33) WILD-TYPE" 
                     TCGA-CG-4304                      TCGA-CG-4305 
"DEL PEAK 30(14Q32.33) WILD-TYPE" "DEL PEAK 30(14Q32.33) WILD-TYPE" 
                     TCGA-CG-4306                      TCGA-CG-4436 
"DEL PEAK 30(14Q32.33) WILD-TYPE"   "DEL PEAK 30(14Q32.33) MUTATED" 
                     TCGA-CG-4437                      TCGA-CG-4438 
"DEL PEAK 30(14Q32.33) WILD-TYPE"   "DEL PEAK 30(14Q32.33) MUTATED" 
                     TCGA-CG-4440                      TCGA-CG-4441 
"DEL PEAK 30(14Q32.33) WILD-TYPE" "DEL PEAK 30(14Q32.33) WILD-TYPE" 
                     TCGA-CG-4443                      TCGA-CG-4444 
  "DEL PEAK 30(14Q32.33) MUTATED"   "DEL PEAK 30(14Q32.33) MUTATED" 
                     TCGA-CG-4449                      TCGA-CG-4455 
  "DEL PEAK 30(14Q32.33) MUTATED" "DEL PEAK 30(14Q32.33) WILD-TYPE" 
                     TCGA-CG-4460                      TCGA-CG-4462 
"DEL PEAK 30(14Q32.33) WILD-TYPE" "DEL PEAK 30(14Q32.33) WILD-TYPE" 
                     TCGA-CG-4465                      TCGA-CG-4466 
"DEL PEAK 30(14Q32.33) WILD-TYPE" "DEL PEAK 30(14Q32.33) WILD-TYPE" 
                     TCGA-CG-4469                      TCGA-CG-4472 
"DEL PEAK 30(14Q32.33) WILD-TYPE" "DEL PEAK 30(14Q32.33) WILD-TYPE" 
                     TCGA-CG-4474                      TCGA-CG-4477 
"DEL PEAK 30(14Q32.33) WILD-TYPE"   "DEL PEAK 30(14Q32.33) MUTATED" 
                     TCGA-CG-5716                      TCGA-CG-5717 
"DEL PEAK 30(14Q32.33) WILD-TYPE" "DEL PEAK 30(14Q32.33) WILD-TYPE" 
                     TCGA-CG-5718                      TCGA-CG-5719 
"DEL PEAK 30(14Q32.33) WILD-TYPE" "DEL PEAK 30(14Q32.33) WILD-TYPE" 
                     TCGA-CG-5720                      TCGA-CG-5721 
"DEL PEAK 30(14Q32.33) WILD-TYPE" "DEL PEAK 30(14Q32.33) WILD-TYPE" 
                     TCGA-CG-5722                      TCGA-CG-5723 
"DEL PEAK 30(14Q32.33) WILD-TYPE" "DEL PEAK 30(14Q32.33) WILD-TYPE" 
                     TCGA-CG-5724                      TCGA-CG-5725 
"DEL PEAK 30(14Q32.33) WILD-TYPE" "DEL PEAK 30(14Q32.33) WILD-TYPE" 
                     TCGA-CG-5726                      TCGA-CG-5727 
"DEL PEAK 30(14Q32.33) WILD-TYPE" "DEL PEAK 30(14Q32.33) WILD-TYPE" 
                     TCGA-CG-5728                      TCGA-CG-5730 
"DEL PEAK 30(14Q32.33) WILD-TYPE" "DEL PEAK 30(14Q32.33) WILD-TYPE" 
                     TCGA-CG-5732                      TCGA-CG-5733 
"DEL PEAK 30(14Q32.33) WILD-TYPE"   "DEL PEAK 30(14Q32.33) MUTATED" 
                     TCGA-CG-5734                      TCGA-D7-5577 
"DEL PEAK 30(14Q32.33) WILD-TYPE" "DEL PEAK 30(14Q32.33) WILD-TYPE" 
                     TCGA-D7-5578                      TCGA-D7-5579 
"DEL PEAK 30(14Q32.33) WILD-TYPE" "DEL PEAK 30(14Q32.33) WILD-TYPE" 
                     TCGA-D7-6518                      TCGA-D7-6519 
"DEL PEAK 30(14Q32.33) WILD-TYPE"   "DEL PEAK 30(14Q32.33) MUTATED" 
                     TCGA-D7-6520                      TCGA-D7-6521 
  "DEL PEAK 30(14Q32.33) MUTATED"   "DEL PEAK 30(14Q32.33) MUTATED" 
                     TCGA-D7-6522                      TCGA-D7-6524 
"DEL PEAK 30(14Q32.33) WILD-TYPE" "DEL PEAK 30(14Q32.33) WILD-TYPE" 
                     TCGA-D7-6525                      TCGA-D7-6526 
  "DEL PEAK 30(14Q32.33) MUTATED" "DEL PEAK 30(14Q32.33) WILD-TYPE" 
                     TCGA-D7-6527                      TCGA-D7-6528 
  "DEL PEAK 30(14Q32.33) MUTATED" "DEL PEAK 30(14Q32.33) WILD-TYPE" 
                     TCGA-D7-6815                      TCGA-D7-6817 
  "DEL PEAK 30(14Q32.33) MUTATED" "DEL PEAK 30(14Q32.33) WILD-TYPE" 
                     TCGA-D7-6818                      TCGA-D7-6820 
"DEL PEAK 30(14Q32.33) WILD-TYPE" "DEL PEAK 30(14Q32.33) WILD-TYPE" 
                     TCGA-D7-6822                      TCGA-EQ-5647 
  "DEL PEAK 30(14Q32.33) MUTATED" "DEL PEAK 30(14Q32.33) WILD-TYPE" 
                     TCGA-EQ-8122                      TCGA-F1-6177 
  "DEL PEAK 30(14Q32.33) MUTATED" "DEL PEAK 30(14Q32.33) WILD-TYPE" 
                     TCGA-F1-6874                      TCGA-F1-6875 
"DEL PEAK 30(14Q32.33) WILD-TYPE" "DEL PEAK 30(14Q32.33) WILD-TYPE" 
                     TCGA-FP-7735                      TCGA-FP-7829 
"DEL PEAK 30(14Q32.33) WILD-TYPE" "DEL PEAK 30(14Q32.33) WILD-TYPE" 
                     TCGA-FP-7916                      TCGA-FP-7998 
  "DEL PEAK 30(14Q32.33) MUTATED" "DEL PEAK 30(14Q32.33) WILD-TYPE" 
                     TCGA-HJ-7597                      TCGA-IN-7806 
  "DEL PEAK 30(14Q32.33) MUTATED"   "DEL PEAK 30(14Q32.33) MUTATED" 
                     TCGA-IN-7808                      TCGA-IP-7968 
"DEL PEAK 30(14Q32.33) WILD-TYPE"   "DEL PEAK 30(14Q32.33) MUTATED" 
[1] "hr=" "3.8"
D56V2, continuous
D56V3, binary
[1] "tbl2"
                                 cls
clus                              [,1] [,2]
  DEL PEAK 30(14Q32.33) MUTATED     17   23
  DEL PEAK 30(14Q32.33) WILD-TYPE   48   73
        clus
vv       DEL PEAK 30(14Q32.33) MUTATED DEL PEAK 30(14Q32.33) WILD-TYPE
  FEMALE                            17                              48
  MALE                              23                              73
D56V4, multiclass
D56V5, multiclass
    clus
vv   DEL PEAK 30(14Q32.33) MUTATED DEL PEAK 30(14Q32.33) WILD-TYPE
  T1                             1                               5
  T2                            17                              36
  T3                            16                              43
  T4                             3                              30
D56V6, multiclass
    clus
vv   DEL PEAK 30(14Q32.33) MUTATED DEL PEAK 30(14Q32.33) WILD-TYPE
  N0                            12                              38
  N1                            14                              43
  N2                            10                              14
  N3                             2                              17
D56V7, multiclass
    clus
vv   DEL PEAK 30(14Q32.33) MUTATED DEL PEAK 30(14Q32.33) WILD-TYPE
  M0                            35                              97
  M1                             0                              18
  MX                             5                               6
D56V8, multiclass
     clus
vv    DEL PEAK 30(14Q32.33) MUTATED DEL PEAK 30(14Q32.33) WILD-TYPE
  I                               7                              18
  II                             10                              33
  III                            17                              31
  IV                              3                              26
D56V9, binary
[1] "tbl2"
                                 cls
clus                              [,1] [,2]
  DEL PEAK 30(14Q32.33) MUTATED     37    3
  DEL PEAK 30(14Q32.33) WILD-TYPE  119    2
     clus
vv    DEL PEAK 30(14Q32.33) MUTATED DEL PEAK 30(14Q32.33) WILD-TYPE
  NO                              3                               2
  YES                            37                             119

Clustering(57) Variable = Del Peak 31(15q11.2) mutation analysis
D57V1, survival
                    TCGA-B7-5816                     TCGA-B7-5818 
"DEL PEAK 31(15Q11.2) WILD-TYPE" "DEL PEAK 31(15Q11.2) WILD-TYPE" 
                    TCGA-BR-6452                     TCGA-BR-6455 
"DEL PEAK 31(15Q11.2) WILD-TYPE" "DEL PEAK 31(15Q11.2) WILD-TYPE" 
                    TCGA-BR-6457                     TCGA-BR-6458 
  "DEL PEAK 31(15Q11.2) MUTATED"   "DEL PEAK 31(15Q11.2) MUTATED" 
                    TCGA-BR-6563                     TCGA-BR-6564 
"DEL PEAK 31(15Q11.2) WILD-TYPE" "DEL PEAK 31(15Q11.2) WILD-TYPE" 
                    TCGA-BR-6565                     TCGA-BR-6566 
  "DEL PEAK 31(15Q11.2) MUTATED" "DEL PEAK 31(15Q11.2) WILD-TYPE" 
                    TCGA-BR-6705                     TCGA-BR-6706 
"DEL PEAK 31(15Q11.2) WILD-TYPE" "DEL PEAK 31(15Q11.2) WILD-TYPE" 
                    TCGA-BR-6707                     TCGA-BR-6709 
"DEL PEAK 31(15Q11.2) WILD-TYPE" "DEL PEAK 31(15Q11.2) WILD-TYPE" 
                    TCGA-BR-6710                     TCGA-BR-6801 
"DEL PEAK 31(15Q11.2) WILD-TYPE" "DEL PEAK 31(15Q11.2) WILD-TYPE" 
                    TCGA-BR-6802                     TCGA-BR-6803 
"DEL PEAK 31(15Q11.2) WILD-TYPE" "DEL PEAK 31(15Q11.2) WILD-TYPE" 
                    TCGA-BR-6852                     TCGA-BR-7196 
"DEL PEAK 31(15Q11.2) WILD-TYPE" "DEL PEAK 31(15Q11.2) WILD-TYPE" 
                    TCGA-BR-7197                     TCGA-BR-7703 
"DEL PEAK 31(15Q11.2) WILD-TYPE"   "DEL PEAK 31(15Q11.2) MUTATED" 
                    TCGA-BR-7704                     TCGA-BR-7707 
  "DEL PEAK 31(15Q11.2) MUTATED" "DEL PEAK 31(15Q11.2) WILD-TYPE" 
                    TCGA-BR-7715                     TCGA-BR-7716 
"DEL PEAK 31(15Q11.2) WILD-TYPE" "DEL PEAK 31(15Q11.2) WILD-TYPE" 
                    TCGA-BR-7717                     TCGA-BR-7722 
"DEL PEAK 31(15Q11.2) WILD-TYPE" "DEL PEAK 31(15Q11.2) WILD-TYPE" 
                    TCGA-BR-7723                     TCGA-BR-7851 
"DEL PEAK 31(15Q11.2) WILD-TYPE" "DEL PEAK 31(15Q11.2) WILD-TYPE" 
                    TCGA-BR-7901                     TCGA-BR-7957 
  "DEL PEAK 31(15Q11.2) MUTATED" "DEL PEAK 31(15Q11.2) WILD-TYPE" 
                    TCGA-BR-7958                     TCGA-BR-7959 
"DEL PEAK 31(15Q11.2) WILD-TYPE" "DEL PEAK 31(15Q11.2) WILD-TYPE" 
                    TCGA-BR-8059                     TCGA-BR-8060 
"DEL PEAK 31(15Q11.2) WILD-TYPE" "DEL PEAK 31(15Q11.2) WILD-TYPE" 
                    TCGA-BR-8077                     TCGA-BR-8078 
"DEL PEAK 31(15Q11.2) WILD-TYPE" "DEL PEAK 31(15Q11.2) WILD-TYPE" 
                    TCGA-BR-8080                     TCGA-BR-8081 
"DEL PEAK 31(15Q11.2) WILD-TYPE" "DEL PEAK 31(15Q11.2) WILD-TYPE" 
                    TCGA-BR-8284                     TCGA-BR-8285 
"DEL PEAK 31(15Q11.2) WILD-TYPE" "DEL PEAK 31(15Q11.2) WILD-TYPE" 
                    TCGA-BR-8286                     TCGA-BR-8289 
"DEL PEAK 31(15Q11.2) WILD-TYPE" "DEL PEAK 31(15Q11.2) WILD-TYPE" 
                    TCGA-BR-8291                     TCGA-BR-8295 
"DEL PEAK 31(15Q11.2) WILD-TYPE" "DEL PEAK 31(15Q11.2) WILD-TYPE" 
                    TCGA-BR-8296                     TCGA-BR-8297 
"DEL PEAK 31(15Q11.2) WILD-TYPE" "DEL PEAK 31(15Q11.2) WILD-TYPE" 
                    TCGA-CD-5798                     TCGA-CD-5799 
"DEL PEAK 31(15Q11.2) WILD-TYPE" "DEL PEAK 31(15Q11.2) WILD-TYPE" 
                    TCGA-CD-5800                     TCGA-CD-5801 
"DEL PEAK 31(15Q11.2) WILD-TYPE"   "DEL PEAK 31(15Q11.2) MUTATED" 
                    TCGA-CD-5802                     TCGA-CD-5803 
"DEL PEAK 31(15Q11.2) WILD-TYPE" "DEL PEAK 31(15Q11.2) WILD-TYPE" 
                    TCGA-CG-4300                     TCGA-CG-4301 
  "DEL PEAK 31(15Q11.2) MUTATED" "DEL PEAK 31(15Q11.2) WILD-TYPE" 
                    TCGA-CG-4304                     TCGA-CG-4305 
"DEL PEAK 31(15Q11.2) WILD-TYPE" "DEL PEAK 31(15Q11.2) WILD-TYPE" 
                    TCGA-CG-4306                     TCGA-CG-4436 
"DEL PEAK 31(15Q11.2) WILD-TYPE"   "DEL PEAK 31(15Q11.2) MUTATED" 
                    TCGA-CG-4437                     TCGA-CG-4438 
"DEL PEAK 31(15Q11.2) WILD-TYPE"   "DEL PEAK 31(15Q11.2) MUTATED" 
                    TCGA-CG-4440                     TCGA-CG-4441 
  "DEL PEAK 31(15Q11.2) MUTATED" "DEL PEAK 31(15Q11.2) WILD-TYPE" 
                    TCGA-CG-4443                     TCGA-CG-4444 
"DEL PEAK 31(15Q11.2) WILD-TYPE"   "DEL PEAK 31(15Q11.2) MUTATED" 
                    TCGA-CG-4449                     TCGA-CG-4455 
"DEL PEAK 31(15Q11.2) WILD-TYPE" "DEL PEAK 31(15Q11.2) WILD-TYPE" 
                    TCGA-CG-4460                     TCGA-CG-4462 
"DEL PEAK 31(15Q11.2) WILD-TYPE" "DEL PEAK 31(15Q11.2) WILD-TYPE" 
                    TCGA-CG-4465                     TCGA-CG-4466 
"DEL PEAK 31(15Q11.2) WILD-TYPE"   "DEL PEAK 31(15Q11.2) MUTATED" 
                    TCGA-CG-4469                     TCGA-CG-4472 
"DEL PEAK 31(15Q11.2) WILD-TYPE" "DEL PEAK 31(15Q11.2) WILD-TYPE" 
                    TCGA-CG-4474                     TCGA-CG-4477 
"DEL PEAK 31(15Q11.2) WILD-TYPE" "DEL PEAK 31(15Q11.2) WILD-TYPE" 
                    TCGA-CG-5716                     TCGA-CG-5717 
"DEL PEAK 31(15Q11.2) WILD-TYPE" "DEL PEAK 31(15Q11.2) WILD-TYPE" 
                    TCGA-CG-5718                     TCGA-CG-5719 
"DEL PEAK 31(15Q11.2) WILD-TYPE"   "DEL PEAK 31(15Q11.2) MUTATED" 
                    TCGA-CG-5720                     TCGA-CG-5721 
"DEL PEAK 31(15Q11.2) WILD-TYPE" "DEL PEAK 31(15Q11.2) WILD-TYPE" 
                    TCGA-CG-5722                     TCGA-CG-5723 
"DEL PEAK 31(15Q11.2) WILD-TYPE" "DEL PEAK 31(15Q11.2) WILD-TYPE" 
                    TCGA-CG-5724                     TCGA-CG-5725 
  "DEL PEAK 31(15Q11.2) MUTATED"   "DEL PEAK 31(15Q11.2) MUTATED" 
                    TCGA-CG-5726                     TCGA-CG-5727 
"DEL PEAK 31(15Q11.2) WILD-TYPE" "DEL PEAK 31(15Q11.2) WILD-TYPE" 
                    TCGA-CG-5728                     TCGA-CG-5730 
"DEL PEAK 31(15Q11.2) WILD-TYPE" "DEL PEAK 31(15Q11.2) WILD-TYPE" 
                    TCGA-CG-5732                     TCGA-CG-5733 
  "DEL PEAK 31(15Q11.2) MUTATED" "DEL PEAK 31(15Q11.2) WILD-TYPE" 
                    TCGA-CG-5734                     TCGA-D7-5577 
"DEL PEAK 31(15Q11.2) WILD-TYPE" "DEL PEAK 31(15Q11.2) WILD-TYPE" 
                    TCGA-D7-5578                     TCGA-D7-5579 
  "DEL PEAK 31(15Q11.2) MUTATED" "DEL PEAK 31(15Q11.2) WILD-TYPE" 
                    TCGA-D7-6518                     TCGA-D7-6519 
  "DEL PEAK 31(15Q11.2) MUTATED"   "DEL PEAK 31(15Q11.2) MUTATED" 
                    TCGA-D7-6520                     TCGA-D7-6521 
  "DEL PEAK 31(15Q11.2) MUTATED" "DEL PEAK 31(15Q11.2) WILD-TYPE" 
                    TCGA-D7-6522                     TCGA-D7-6524 
"DEL PEAK 31(15Q11.2) WILD-TYPE" "DEL PEAK 31(15Q11.2) WILD-TYPE" 
                    TCGA-D7-6525                     TCGA-D7-6526 
  "DEL PEAK 31(15Q11.2) MUTATED"   "DEL PEAK 31(15Q11.2) MUTATED" 
                    TCGA-D7-6527                     TCGA-D7-6528 
  "DEL PEAK 31(15Q11.2) MUTATED"   "DEL PEAK 31(15Q11.2) MUTATED" 
                    TCGA-D7-6815                     TCGA-D7-6817 
  "DEL PEAK 31(15Q11.2) MUTATED"   "DEL PEAK 31(15Q11.2) MUTATED" 
                    TCGA-D7-6818                     TCGA-D7-6820 
"DEL PEAK 31(15Q11.2) WILD-TYPE" "DEL PEAK 31(15Q11.2) WILD-TYPE" 
                    TCGA-D7-6822                     TCGA-EQ-5647 
"DEL PEAK 31(15Q11.2) WILD-TYPE" "DEL PEAK 31(15Q11.2) WILD-TYPE" 
                    TCGA-EQ-8122                     TCGA-F1-6177 
"DEL PEAK 31(15Q11.2) WILD-TYPE" "DEL PEAK 31(15Q11.2) WILD-TYPE" 
                    TCGA-F1-6874                     TCGA-F1-6875 
"DEL PEAK 31(15Q11.2) WILD-TYPE"   "DEL PEAK 31(15Q11.2) MUTATED" 
                    TCGA-FP-7735                     TCGA-FP-7829 
"DEL PEAK 31(15Q11.2) WILD-TYPE" "DEL PEAK 31(15Q11.2) WILD-TYPE" 
                    TCGA-FP-7916                     TCGA-FP-7998 
"DEL PEAK 31(15Q11.2) WILD-TYPE" "DEL PEAK 31(15Q11.2) WILD-TYPE" 
                    TCGA-HJ-7597                     TCGA-IN-7806 
  "DEL PEAK 31(15Q11.2) MUTATED" "DEL PEAK 31(15Q11.2) WILD-TYPE" 
                    TCGA-IN-7808                     TCGA-IP-7968 
"DEL PEAK 31(15Q11.2) WILD-TYPE"   "DEL PEAK 31(15Q11.2) MUTATED" 
                    TCGA-B7-5816                     TCGA-B7-5818 
"DEL PEAK 31(15Q11.2) WILD-TYPE" "DEL PEAK 31(15Q11.2) WILD-TYPE" 
                    TCGA-BR-6452                     TCGA-BR-6455 
"DEL PEAK 31(15Q11.2) WILD-TYPE" "DEL PEAK 31(15Q11.2) WILD-TYPE" 
                    TCGA-BR-6457                     TCGA-BR-6458 
  "DEL PEAK 31(15Q11.2) MUTATED"   "DEL PEAK 31(15Q11.2) MUTATED" 
                    TCGA-BR-6563                     TCGA-BR-6564 
"DEL PEAK 31(15Q11.2) WILD-TYPE" "DEL PEAK 31(15Q11.2) WILD-TYPE" 
                    TCGA-BR-6565                     TCGA-BR-6566 
  "DEL PEAK 31(15Q11.2) MUTATED" "DEL PEAK 31(15Q11.2) WILD-TYPE" 
                    TCGA-BR-6705                     TCGA-BR-6706 
"DEL PEAK 31(15Q11.2) WILD-TYPE" "DEL PEAK 31(15Q11.2) WILD-TYPE" 
                    TCGA-BR-6707                     TCGA-BR-6709 
"DEL PEAK 31(15Q11.2) WILD-TYPE" "DEL PEAK 31(15Q11.2) WILD-TYPE" 
                    TCGA-BR-6710                     TCGA-BR-6801 
"DEL PEAK 31(15Q11.2) WILD-TYPE" "DEL PEAK 31(15Q11.2) WILD-TYPE" 
                    TCGA-BR-6802                     TCGA-BR-6803 
"DEL PEAK 31(15Q11.2) WILD-TYPE" "DEL PEAK 31(15Q11.2) WILD-TYPE" 
                    TCGA-BR-6852                     TCGA-BR-7196 
"DEL PEAK 31(15Q11.2) WILD-TYPE" "DEL PEAK 31(15Q11.2) WILD-TYPE" 
                    TCGA-BR-7197                     TCGA-BR-7703 
"DEL PEAK 31(15Q11.2) WILD-TYPE"   "DEL PEAK 31(15Q11.2) MUTATED" 
                    TCGA-BR-7704                     TCGA-BR-7707 
  "DEL PEAK 31(15Q11.2) MUTATED" "DEL PEAK 31(15Q11.2) WILD-TYPE" 
                    TCGA-BR-7715                     TCGA-BR-7716 
"DEL PEAK 31(15Q11.2) WILD-TYPE" "DEL PEAK 31(15Q11.2) WILD-TYPE" 
                    TCGA-BR-7717                     TCGA-BR-7722 
"DEL PEAK 31(15Q11.2) WILD-TYPE" "DEL PEAK 31(15Q11.2) WILD-TYPE" 
                    TCGA-BR-7723                     TCGA-BR-7851 
"DEL PEAK 31(15Q11.2) WILD-TYPE" "DEL PEAK 31(15Q11.2) WILD-TYPE" 
                    TCGA-BR-7901                     TCGA-BR-7957 
  "DEL PEAK 31(15Q11.2) MUTATED" "DEL PEAK 31(15Q11.2) WILD-TYPE" 
                    TCGA-BR-7958                     TCGA-BR-7959 
"DEL PEAK 31(15Q11.2) WILD-TYPE" "DEL PEAK 31(15Q11.2) WILD-TYPE" 
                    TCGA-BR-8059                     TCGA-BR-8060 
"DEL PEAK 31(15Q11.2) WILD-TYPE" "DEL PEAK 31(15Q11.2) WILD-TYPE" 
                    TCGA-BR-8077                     TCGA-BR-8078 
"DEL PEAK 31(15Q11.2) WILD-TYPE" "DEL PEAK 31(15Q11.2) WILD-TYPE" 
                    TCGA-BR-8080                     TCGA-BR-8081 
"DEL PEAK 31(15Q11.2) WILD-TYPE" "DEL PEAK 31(15Q11.2) WILD-TYPE" 
                    TCGA-BR-8284                     TCGA-BR-8285 
"DEL PEAK 31(15Q11.2) WILD-TYPE" "DEL PEAK 31(15Q11.2) WILD-TYPE" 
                    TCGA-BR-8286                     TCGA-BR-8289 
"DEL PEAK 31(15Q11.2) WILD-TYPE" "DEL PEAK 31(15Q11.2) WILD-TYPE" 
                    TCGA-BR-8291                     TCGA-BR-8295 
"DEL PEAK 31(15Q11.2) WILD-TYPE" "DEL PEAK 31(15Q11.2) WILD-TYPE" 
                    TCGA-BR-8296                     TCGA-BR-8297 
"DEL PEAK 31(15Q11.2) WILD-TYPE" "DEL PEAK 31(15Q11.2) WILD-TYPE" 
                    TCGA-CD-5798                     TCGA-CD-5799 
"DEL PEAK 31(15Q11.2) WILD-TYPE" "DEL PEAK 31(15Q11.2) WILD-TYPE" 
                    TCGA-CD-5800                     TCGA-CD-5801 
"DEL PEAK 31(15Q11.2) WILD-TYPE"   "DEL PEAK 31(15Q11.2) MUTATED" 
                    TCGA-CD-5802                     TCGA-CD-5803 
"DEL PEAK 31(15Q11.2) WILD-TYPE" "DEL PEAK 31(15Q11.2) WILD-TYPE" 
                    TCGA-CG-4300                     TCGA-CG-4301 
  "DEL PEAK 31(15Q11.2) MUTATED" "DEL PEAK 31(15Q11.2) WILD-TYPE" 
                    TCGA-CG-4304                     TCGA-CG-4305 
"DEL PEAK 31(15Q11.2) WILD-TYPE" "DEL PEAK 31(15Q11.2) WILD-TYPE" 
                    TCGA-CG-4306                     TCGA-CG-4436 
"DEL PEAK 31(15Q11.2) WILD-TYPE"   "DEL PEAK 31(15Q11.2) MUTATED" 
                    TCGA-CG-4437                     TCGA-CG-4438 
"DEL PEAK 31(15Q11.2) WILD-TYPE"   "DEL PEAK 31(15Q11.2) MUTATED" 
                    TCGA-CG-4440                     TCGA-CG-4441 
  "DEL PEAK 31(15Q11.2) MUTATED" "DEL PEAK 31(15Q11.2) WILD-TYPE" 
                    TCGA-CG-4443                     TCGA-CG-4444 
"DEL PEAK 31(15Q11.2) WILD-TYPE"   "DEL PEAK 31(15Q11.2) MUTATED" 
                    TCGA-CG-4449                     TCGA-CG-4455 
"DEL PEAK 31(15Q11.2) WILD-TYPE" "DEL PEAK 31(15Q11.2) WILD-TYPE" 
                    TCGA-CG-4460                     TCGA-CG-4462 
"DEL PEAK 31(15Q11.2) WILD-TYPE" "DEL PEAK 31(15Q11.2) WILD-TYPE" 
                    TCGA-CG-4465                     TCGA-CG-4466 
"DEL PEAK 31(15Q11.2) WILD-TYPE"   "DEL PEAK 31(15Q11.2) MUTATED" 
                    TCGA-CG-4469                     TCGA-CG-4472 
"DEL PEAK 31(15Q11.2) WILD-TYPE" "DEL PEAK 31(15Q11.2) WILD-TYPE" 
                    TCGA-CG-4474                     TCGA-CG-4477 
"DEL PEAK 31(15Q11.2) WILD-TYPE" "DEL PEAK 31(15Q11.2) WILD-TYPE" 
                    TCGA-CG-5716                     TCGA-CG-5717 
"DEL PEAK 31(15Q11.2) WILD-TYPE" "DEL PEAK 31(15Q11.2) WILD-TYPE" 
                    TCGA-CG-5718                     TCGA-CG-5719 
"DEL PEAK 31(15Q11.2) WILD-TYPE"   "DEL PEAK 31(15Q11.2) MUTATED" 
                    TCGA-CG-5720                     TCGA-CG-5721 
"DEL PEAK 31(15Q11.2) WILD-TYPE" "DEL PEAK 31(15Q11.2) WILD-TYPE" 
                    TCGA-CG-5722                     TCGA-CG-5723 
"DEL PEAK 31(15Q11.2) WILD-TYPE" "DEL PEAK 31(15Q11.2) WILD-TYPE" 
                    TCGA-CG-5724                     TCGA-CG-5725 
  "DEL PEAK 31(15Q11.2) MUTATED"   "DEL PEAK 31(15Q11.2) MUTATED" 
                    TCGA-CG-5726                     TCGA-CG-5727 
"DEL PEAK 31(15Q11.2) WILD-TYPE" "DEL PEAK 31(15Q11.2) WILD-TYPE" 
                    TCGA-CG-5728                     TCGA-CG-5730 
"DEL PEAK 31(15Q11.2) WILD-TYPE" "DEL PEAK 31(15Q11.2) WILD-TYPE" 
                    TCGA-CG-5732                     TCGA-CG-5733 
  "DEL PEAK 31(15Q11.2) MUTATED" "DEL PEAK 31(15Q11.2) WILD-TYPE" 
                    TCGA-CG-5734                     TCGA-D7-5577 
"DEL PEAK 31(15Q11.2) WILD-TYPE" "DEL PEAK 31(15Q11.2) WILD-TYPE" 
                    TCGA-D7-5578                     TCGA-D7-5579 
  "DEL PEAK 31(15Q11.2) MUTATED" "DEL PEAK 31(15Q11.2) WILD-TYPE" 
                    TCGA-D7-6518                     TCGA-D7-6519 
  "DEL PEAK 31(15Q11.2) MUTATED"   "DEL PEAK 31(15Q11.2) MUTATED" 
                    TCGA-D7-6520                     TCGA-D7-6521 
  "DEL PEAK 31(15Q11.2) MUTATED" "DEL PEAK 31(15Q11.2) WILD-TYPE" 
                    TCGA-D7-6522                     TCGA-D7-6524 
"DEL PEAK 31(15Q11.2) WILD-TYPE" "DEL PEAK 31(15Q11.2) WILD-TYPE" 
                    TCGA-D7-6525                     TCGA-D7-6526 
  "DEL PEAK 31(15Q11.2) MUTATED"   "DEL PEAK 31(15Q11.2) MUTATED" 
                    TCGA-D7-6527                     TCGA-D7-6528 
  "DEL PEAK 31(15Q11.2) MUTATED"   "DEL PEAK 31(15Q11.2) MUTATED" 
                    TCGA-D7-6815                     TCGA-D7-6817 
  "DEL PEAK 31(15Q11.2) MUTATED"   "DEL PEAK 31(15Q11.2) MUTATED" 
                    TCGA-D7-6818                     TCGA-D7-6820 
"DEL PEAK 31(15Q11.2) WILD-TYPE" "DEL PEAK 31(15Q11.2) WILD-TYPE" 
                    TCGA-D7-6822                     TCGA-EQ-5647 
"DEL PEAK 31(15Q11.2) WILD-TYPE" "DEL PEAK 31(15Q11.2) WILD-TYPE" 
                    TCGA-EQ-8122                     TCGA-F1-6177 
"DEL PEAK 31(15Q11.2) WILD-TYPE" "DEL PEAK 31(15Q11.2) WILD-TYPE" 
                    TCGA-F1-6874                     TCGA-F1-6875 
"DEL PEAK 31(15Q11.2) WILD-TYPE"   "DEL PEAK 31(15Q11.2) MUTATED" 
                    TCGA-FP-7735                     TCGA-FP-7829 
"DEL PEAK 31(15Q11.2) WILD-TYPE" "DEL PEAK 31(15Q11.2) WILD-TYPE" 
                    TCGA-FP-7916                     TCGA-FP-7998 
"DEL PEAK 31(15Q11.2) WILD-TYPE" "DEL PEAK 31(15Q11.2) WILD-TYPE" 
                    TCGA-HJ-7597                     TCGA-IN-7806 
  "DEL PEAK 31(15Q11.2) MUTATED" "DEL PEAK 31(15Q11.2) WILD-TYPE" 
                    TCGA-IN-7808                     TCGA-IP-7968 
"DEL PEAK 31(15Q11.2) WILD-TYPE"   "DEL PEAK 31(15Q11.2) MUTATED" 
                    TCGA-B7-5816                     TCGA-B7-5818 
"DEL PEAK 31(15Q11.2) WILD-TYPE" "DEL PEAK 31(15Q11.2) WILD-TYPE" 
                    TCGA-BR-6452                     TCGA-BR-6455 
"DEL PEAK 31(15Q11.2) WILD-TYPE" "DEL PEAK 31(15Q11.2) WILD-TYPE" 
                    TCGA-BR-6457                     TCGA-BR-6458 
  "DEL PEAK 31(15Q11.2) MUTATED"   "DEL PEAK 31(15Q11.2) MUTATED" 
                    TCGA-BR-6563                     TCGA-BR-6564 
"DEL PEAK 31(15Q11.2) WILD-TYPE" "DEL PEAK 31(15Q11.2) WILD-TYPE" 
                    TCGA-BR-6565                     TCGA-BR-6566 
  "DEL PEAK 31(15Q11.2) MUTATED" "DEL PEAK 31(15Q11.2) WILD-TYPE" 
                    TCGA-BR-6705                     TCGA-BR-6706 
"DEL PEAK 31(15Q11.2) WILD-TYPE" "DEL PEAK 31(15Q11.2) WILD-TYPE" 
                    TCGA-BR-6707                     TCGA-BR-6709 
"DEL PEAK 31(15Q11.2) WILD-TYPE" "DEL PEAK 31(15Q11.2) WILD-TYPE" 
                    TCGA-BR-6710                     TCGA-BR-6801 
"DEL PEAK 31(15Q11.2) WILD-TYPE" "DEL PEAK 31(15Q11.2) WILD-TYPE" 
                    TCGA-BR-6802                     TCGA-BR-6803 
"DEL PEAK 31(15Q11.2) WILD-TYPE" "DEL PEAK 31(15Q11.2) WILD-TYPE" 
                    TCGA-BR-6852                     TCGA-BR-7196 
"DEL PEAK 31(15Q11.2) WILD-TYPE" "DEL PEAK 31(15Q11.2) WILD-TYPE" 
                    TCGA-BR-7197                     TCGA-BR-7703 
"DEL PEAK 31(15Q11.2) WILD-TYPE"   "DEL PEAK 31(15Q11.2) MUTATED" 
                    TCGA-BR-7704                     TCGA-BR-7707 
  "DEL PEAK 31(15Q11.2) MUTATED" "DEL PEAK 31(15Q11.2) WILD-TYPE" 
                    TCGA-BR-7715                     TCGA-BR-7716 
"DEL PEAK 31(15Q11.2) WILD-TYPE" "DEL PEAK 31(15Q11.2) WILD-TYPE" 
                    TCGA-BR-7717                     TCGA-BR-7722 
"DEL PEAK 31(15Q11.2) WILD-TYPE" "DEL PEAK 31(15Q11.2) WILD-TYPE" 
                    TCGA-BR-7723                     TCGA-BR-7851 
"DEL PEAK 31(15Q11.2) WILD-TYPE" "DEL PEAK 31(15Q11.2) WILD-TYPE" 
                    TCGA-BR-7901                     TCGA-BR-7957 
  "DEL PEAK 31(15Q11.2) MUTATED" "DEL PEAK 31(15Q11.2) WILD-TYPE" 
                    TCGA-BR-7958                     TCGA-BR-7959 
"DEL PEAK 31(15Q11.2) WILD-TYPE" "DEL PEAK 31(15Q11.2) WILD-TYPE" 
                    TCGA-BR-8059                     TCGA-BR-8060 
"DEL PEAK 31(15Q11.2) WILD-TYPE" "DEL PEAK 31(15Q11.2) WILD-TYPE" 
                    TCGA-BR-8077                     TCGA-BR-8078 
"DEL PEAK 31(15Q11.2) WILD-TYPE" "DEL PEAK 31(15Q11.2) WILD-TYPE" 
                    TCGA-BR-8080                     TCGA-BR-8081 
"DEL PEAK 31(15Q11.2) WILD-TYPE" "DEL PEAK 31(15Q11.2) WILD-TYPE" 
                    TCGA-BR-8284                     TCGA-BR-8285 
"DEL PEAK 31(15Q11.2) WILD-TYPE" "DEL PEAK 31(15Q11.2) WILD-TYPE" 
                    TCGA-BR-8286                     TCGA-BR-8289 
"DEL PEAK 31(15Q11.2) WILD-TYPE" "DEL PEAK 31(15Q11.2) WILD-TYPE" 
                    TCGA-BR-8291                     TCGA-BR-8295 
"DEL PEAK 31(15Q11.2) WILD-TYPE" "DEL PEAK 31(15Q11.2) WILD-TYPE" 
                    TCGA-BR-8296                     TCGA-BR-8297 
"DEL PEAK 31(15Q11.2) WILD-TYPE" "DEL PEAK 31(15Q11.2) WILD-TYPE" 
                    TCGA-CD-5798                     TCGA-CD-5799 
"DEL PEAK 31(15Q11.2) WILD-TYPE" "DEL PEAK 31(15Q11.2) WILD-TYPE" 
                    TCGA-CD-5800                     TCGA-CD-5801 
"DEL PEAK 31(15Q11.2) WILD-TYPE"   "DEL PEAK 31(15Q11.2) MUTATED" 
                    TCGA-CD-5802                     TCGA-CD-5803 
"DEL PEAK 31(15Q11.2) WILD-TYPE" "DEL PEAK 31(15Q11.2) WILD-TYPE" 
                    TCGA-CG-4300                     TCGA-CG-4301 
  "DEL PEAK 31(15Q11.2) MUTATED" "DEL PEAK 31(15Q11.2) WILD-TYPE" 
                    TCGA-CG-4304                     TCGA-CG-4305 
"DEL PEAK 31(15Q11.2) WILD-TYPE" "DEL PEAK 31(15Q11.2) WILD-TYPE" 
                    TCGA-CG-4306                     TCGA-CG-4436 
"DEL PEAK 31(15Q11.2) WILD-TYPE"   "DEL PEAK 31(15Q11.2) MUTATED" 
                    TCGA-CG-4437                     TCGA-CG-4438 
"DEL PEAK 31(15Q11.2) WILD-TYPE"   "DEL PEAK 31(15Q11.2) MUTATED" 
                    TCGA-CG-4440                     TCGA-CG-4441 
  "DEL PEAK 31(15Q11.2) MUTATED" "DEL PEAK 31(15Q11.2) WILD-TYPE" 
                    TCGA-CG-4443                     TCGA-CG-4444 
"DEL PEAK 31(15Q11.2) WILD-TYPE"   "DEL PEAK 31(15Q11.2) MUTATED" 
                    TCGA-CG-4449                     TCGA-CG-4455 
"DEL PEAK 31(15Q11.2) WILD-TYPE" "DEL PEAK 31(15Q11.2) WILD-TYPE" 
                    TCGA-CG-4460                     TCGA-CG-4462 
"DEL PEAK 31(15Q11.2) WILD-TYPE" "DEL PEAK 31(15Q11.2) WILD-TYPE" 
                    TCGA-CG-4465                     TCGA-CG-4466 
"DEL PEAK 31(15Q11.2) WILD-TYPE"   "DEL PEAK 31(15Q11.2) MUTATED" 
                    TCGA-CG-4469                     TCGA-CG-4472 
"DEL PEAK 31(15Q11.2) WILD-TYPE" "DEL PEAK 31(15Q11.2) WILD-TYPE" 
                    TCGA-CG-4474                     TCGA-CG-4477 
"DEL PEAK 31(15Q11.2) WILD-TYPE" "DEL PEAK 31(15Q11.2) WILD-TYPE" 
                    TCGA-CG-5716                     TCGA-CG-5717 
"DEL PEAK 31(15Q11.2) WILD-TYPE" "DEL PEAK 31(15Q11.2) WILD-TYPE" 
                    TCGA-CG-5718                     TCGA-CG-5719 
"DEL PEAK 31(15Q11.2) WILD-TYPE"   "DEL PEAK 31(15Q11.2) MUTATED" 
                    TCGA-CG-5720                     TCGA-CG-5721 
"DEL PEAK 31(15Q11.2) WILD-TYPE" "DEL PEAK 31(15Q11.2) WILD-TYPE" 
                    TCGA-CG-5722                     TCGA-CG-5723 
"DEL PEAK 31(15Q11.2) WILD-TYPE" "DEL PEAK 31(15Q11.2) WILD-TYPE" 
                    TCGA-CG-5724                     TCGA-CG-5725 
  "DEL PEAK 31(15Q11.2) MUTATED"   "DEL PEAK 31(15Q11.2) MUTATED" 
                    TCGA-CG-5726                     TCGA-CG-5727 
"DEL PEAK 31(15Q11.2) WILD-TYPE" "DEL PEAK 31(15Q11.2) WILD-TYPE" 
                    TCGA-CG-5728                     TCGA-CG-5730 
"DEL PEAK 31(15Q11.2) WILD-TYPE" "DEL PEAK 31(15Q11.2) WILD-TYPE" 
                    TCGA-CG-5732                     TCGA-CG-5733 
  "DEL PEAK 31(15Q11.2) MUTATED" "DEL PEAK 31(15Q11.2) WILD-TYPE" 
                    TCGA-CG-5734                     TCGA-D7-5577 
"DEL PEAK 31(15Q11.2) WILD-TYPE" "DEL PEAK 31(15Q11.2) WILD-TYPE" 
                    TCGA-D7-5578                     TCGA-D7-5579 
  "DEL PEAK 31(15Q11.2) MUTATED" "DEL PEAK 31(15Q11.2) WILD-TYPE" 
                    TCGA-D7-6518                     TCGA-D7-6519 
  "DEL PEAK 31(15Q11.2) MUTATED"   "DEL PEAK 31(15Q11.2) MUTATED" 
                    TCGA-D7-6520                     TCGA-D7-6521 
  "DEL PEAK 31(15Q11.2) MUTATED" "DEL PEAK 31(15Q11.2) WILD-TYPE" 
                    TCGA-D7-6522                     TCGA-D7-6524 
"DEL PEAK 31(15Q11.2) WILD-TYPE" "DEL PEAK 31(15Q11.2) WILD-TYPE" 
                    TCGA-D7-6525                     TCGA-D7-6526 
  "DEL PEAK 31(15Q11.2) MUTATED"   "DEL PEAK 31(15Q11.2) MUTATED" 
                    TCGA-D7-6527                     TCGA-D7-6528 
  "DEL PEAK 31(15Q11.2) MUTATED"   "DEL PEAK 31(15Q11.2) MUTATED" 
                    TCGA-D7-6815                     TCGA-D7-6817 
  "DEL PEAK 31(15Q11.2) MUTATED"   "DEL PEAK 31(15Q11.2) MUTATED" 
                    TCGA-D7-6818                     TCGA-D7-6820 
"DEL PEAK 31(15Q11.2) WILD-TYPE" "DEL PEAK 31(15Q11.2) WILD-TYPE" 
                    TCGA-D7-6822                     TCGA-EQ-5647 
"DEL PEAK 31(15Q11.2) WILD-TYPE" "DEL PEAK 31(15Q11.2) WILD-TYPE" 
                    TCGA-EQ-8122                     TCGA-F1-6177 
"DEL PEAK 31(15Q11.2) WILD-TYPE" "DEL PEAK 31(15Q11.2) WILD-TYPE" 
                    TCGA-F1-6874                     TCGA-F1-6875 
"DEL PEAK 31(15Q11.2) WILD-TYPE"   "DEL PEAK 31(15Q11.2) MUTATED" 
                    TCGA-FP-7735                     TCGA-FP-7829 
"DEL PEAK 31(15Q11.2) WILD-TYPE" "DEL PEAK 31(15Q11.2) WILD-TYPE" 
                    TCGA-FP-7916                     TCGA-FP-7998 
"DEL PEAK 31(15Q11.2) WILD-TYPE" "DEL PEAK 31(15Q11.2) WILD-TYPE" 
                    TCGA-HJ-7597                     TCGA-IN-7806 
  "DEL PEAK 31(15Q11.2) MUTATED" "DEL PEAK 31(15Q11.2) WILD-TYPE" 
                    TCGA-IN-7808                     TCGA-IP-7968 
"DEL PEAK 31(15Q11.2) WILD-TYPE"   "DEL PEAK 31(15Q11.2) MUTATED" 
[1] "hr=" "2"  
D57V2, continuous
D57V3, binary
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  DEL PEAK 31(15Q11.2) MUTATED     13   26
  DEL PEAK 31(15Q11.2) WILD-TYPE   52   70
        clus
vv       DEL PEAK 31(15Q11.2) MUTATED DEL PEAK 31(15Q11.2) WILD-TYPE
  FEMALE                           13                             52
  MALE                             26                             70
D57V4, multiclass
D57V5, multiclass
    clus
vv   DEL PEAK 31(15Q11.2) MUTATED DEL PEAK 31(15Q11.2) WILD-TYPE
  T1                            1                              5
  T2                           18                             35
  T3                           15                             44
  T4                            2                             31
D57V6, multiclass
    clus
vv   DEL PEAK 31(15Q11.2) MUTATED DEL PEAK 31(15Q11.2) WILD-TYPE
  N0                           13                             37
  N1                            7                             50
  N2                            9                             15
  N3                            6                             13
D57V7, multiclass
    clus
vv   DEL PEAK 31(15Q11.2) MUTATED DEL PEAK 31(15Q11.2) WILD-TYPE
  M0                           33                             99
  M1                            3                             15
  MX                            3                              8
D57V8, multiclass
     clus
vv    DEL PEAK 31(15Q11.2) MUTATED DEL PEAK 31(15Q11.2) WILD-TYPE
  I                              8                             17
  II                             7                             36
  III                           13                             35
  IV                             7                             22
D57V9, binary
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  DEL PEAK 31(15Q11.2) MUTATED     36    3
  DEL PEAK 31(15Q11.2) WILD-TYPE  120    2
     clus
vv    DEL PEAK 31(15Q11.2) MUTATED DEL PEAK 31(15Q11.2) WILD-TYPE
  NO                             3                              2
  YES                           36                            120

Clustering(58) Variable = Del Peak 32(15q15.1) mutation analysis
D58V1, survival
                    TCGA-B7-5816                     TCGA-B7-5818 
"DEL PEAK 32(15Q15.1) WILD-TYPE" "DEL PEAK 32(15Q15.1) WILD-TYPE" 
                    TCGA-BR-6452                     TCGA-BR-6455 
"DEL PEAK 32(15Q15.1) WILD-TYPE" "DEL PEAK 32(15Q15.1) WILD-TYPE" 
                    TCGA-BR-6457                     TCGA-BR-6458 
"DEL PEAK 32(15Q15.1) WILD-TYPE" "DEL PEAK 32(15Q15.1) WILD-TYPE" 
                    TCGA-BR-6563                     TCGA-BR-6564 
"DEL PEAK 32(15Q15.1) WILD-TYPE" "DEL PEAK 32(15Q15.1) WILD-TYPE" 
                    TCGA-BR-6565                     TCGA-BR-6566 
  "DEL PEAK 32(15Q15.1) MUTATED" "DEL PEAK 32(15Q15.1) WILD-TYPE" 
                    TCGA-BR-6705                     TCGA-BR-6706 
"DEL PEAK 32(15Q15.1) WILD-TYPE" "DEL PEAK 32(15Q15.1) WILD-TYPE" 
                    TCGA-BR-6707                     TCGA-BR-6709 
"DEL PEAK 32(15Q15.1) WILD-TYPE"   "DEL PEAK 32(15Q15.1) MUTATED" 
                    TCGA-BR-6710                     TCGA-BR-6801 
"DEL PEAK 32(15Q15.1) WILD-TYPE" "DEL PEAK 32(15Q15.1) WILD-TYPE" 
                    TCGA-BR-6802                     TCGA-BR-6803 
"DEL PEAK 32(15Q15.1) WILD-TYPE" "DEL PEAK 32(15Q15.1) WILD-TYPE" 
                    TCGA-BR-6852                     TCGA-BR-7196 
"DEL PEAK 32(15Q15.1) WILD-TYPE" "DEL PEAK 32(15Q15.1) WILD-TYPE" 
                    TCGA-BR-7197                     TCGA-BR-7703 
"DEL PEAK 32(15Q15.1) WILD-TYPE" "DEL PEAK 32(15Q15.1) WILD-TYPE" 
                    TCGA-BR-7704                     TCGA-BR-7707 
  "DEL PEAK 32(15Q15.1) MUTATED" "DEL PEAK 32(15Q15.1) WILD-TYPE" 
                    TCGA-BR-7715                     TCGA-BR-7716 
"DEL PEAK 32(15Q15.1) WILD-TYPE" "DEL PEAK 32(15Q15.1) WILD-TYPE" 
                    TCGA-BR-7717                     TCGA-BR-7722 
"DEL PEAK 32(15Q15.1) WILD-TYPE" "DEL PEAK 32(15Q15.1) WILD-TYPE" 
                    TCGA-BR-7723                     TCGA-BR-7851 
"DEL PEAK 32(15Q15.1) WILD-TYPE" "DEL PEAK 32(15Q15.1) WILD-TYPE" 
                    TCGA-BR-7901                     TCGA-BR-7957 
  "DEL PEAK 32(15Q15.1) MUTATED" "DEL PEAK 32(15Q15.1) WILD-TYPE" 
                    TCGA-BR-7958                     TCGA-BR-7959 
"DEL PEAK 32(15Q15.1) WILD-TYPE" "DEL PEAK 32(15Q15.1) WILD-TYPE" 
                    TCGA-BR-8059                     TCGA-BR-8060 
"DEL PEAK 32(15Q15.1) WILD-TYPE" "DEL PEAK 32(15Q15.1) WILD-TYPE" 
                    TCGA-BR-8077                     TCGA-BR-8078 
"DEL PEAK 32(15Q15.1) WILD-TYPE" "DEL PEAK 32(15Q15.1) WILD-TYPE" 
                    TCGA-BR-8080                     TCGA-BR-8081 
"DEL PEAK 32(15Q15.1) WILD-TYPE" "DEL PEAK 32(15Q15.1) WILD-TYPE" 
                    TCGA-BR-8284                     TCGA-BR-8285 
"DEL PEAK 32(15Q15.1) WILD-TYPE" "DEL PEAK 32(15Q15.1) WILD-TYPE" 
                    TCGA-BR-8286                     TCGA-BR-8289 
"DEL PEAK 32(15Q15.1) WILD-TYPE" "DEL PEAK 32(15Q15.1) WILD-TYPE" 
                    TCGA-BR-8291                     TCGA-BR-8295 
"DEL PEAK 32(15Q15.1) WILD-TYPE" "DEL PEAK 32(15Q15.1) WILD-TYPE" 
                    TCGA-BR-8296                     TCGA-BR-8297 
"DEL PEAK 32(15Q15.1) WILD-TYPE" "DEL PEAK 32(15Q15.1) WILD-TYPE" 
                    TCGA-CD-5798                     TCGA-CD-5799 
"DEL PEAK 32(15Q15.1) WILD-TYPE" "DEL PEAK 32(15Q15.1) WILD-TYPE" 
                    TCGA-CD-5800                     TCGA-CD-5801 
"DEL PEAK 32(15Q15.1) WILD-TYPE"   "DEL PEAK 32(15Q15.1) MUTATED" 
                    TCGA-CD-5802                     TCGA-CD-5803 
"DEL PEAK 32(15Q15.1) WILD-TYPE" "DEL PEAK 32(15Q15.1) WILD-TYPE" 
                    TCGA-CG-4300                     TCGA-CG-4301 
  "DEL PEAK 32(15Q15.1) MUTATED" "DEL PEAK 32(15Q15.1) WILD-TYPE" 
                    TCGA-CG-4304                     TCGA-CG-4305 
"DEL PEAK 32(15Q15.1) WILD-TYPE" "DEL PEAK 32(15Q15.1) WILD-TYPE" 
                    TCGA-CG-4306                     TCGA-CG-4436 
"DEL PEAK 32(15Q15.1) WILD-TYPE"   "DEL PEAK 32(15Q15.1) MUTATED" 
                    TCGA-CG-4437                     TCGA-CG-4438 
"DEL PEAK 32(15Q15.1) WILD-TYPE"   "DEL PEAK 32(15Q15.1) MUTATED" 
                    TCGA-CG-4440                     TCGA-CG-4441 
  "DEL PEAK 32(15Q15.1) MUTATED"   "DEL PEAK 32(15Q15.1) MUTATED" 
                    TCGA-CG-4443                     TCGA-CG-4444 
"DEL PEAK 32(15Q15.1) WILD-TYPE"   "DEL PEAK 32(15Q15.1) MUTATED" 
                    TCGA-CG-4449                     TCGA-CG-4455 
"DEL PEAK 32(15Q15.1) WILD-TYPE" "DEL PEAK 32(15Q15.1) WILD-TYPE" 
                    TCGA-CG-4460                     TCGA-CG-4462 
"DEL PEAK 32(15Q15.1) WILD-TYPE" "DEL PEAK 32(15Q15.1) WILD-TYPE" 
                    TCGA-CG-4465                     TCGA-CG-4466 
"DEL PEAK 32(15Q15.1) WILD-TYPE"   "DEL PEAK 32(15Q15.1) MUTATED" 
                    TCGA-CG-4469                     TCGA-CG-4472 
"DEL PEAK 32(15Q15.1) WILD-TYPE" "DEL PEAK 32(15Q15.1) WILD-TYPE" 
                    TCGA-CG-4474                     TCGA-CG-4477 
"DEL PEAK 32(15Q15.1) WILD-TYPE"   "DEL PEAK 32(15Q15.1) MUTATED" 
                    TCGA-CG-5716                     TCGA-CG-5717 
"DEL PEAK 32(15Q15.1) WILD-TYPE" "DEL PEAK 32(15Q15.1) WILD-TYPE" 
                    TCGA-CG-5718                     TCGA-CG-5719 
"DEL PEAK 32(15Q15.1) WILD-TYPE"   "DEL PEAK 32(15Q15.1) MUTATED" 
                    TCGA-CG-5720                     TCGA-CG-5721 
"DEL PEAK 32(15Q15.1) WILD-TYPE" "DEL PEAK 32(15Q15.1) WILD-TYPE" 
                    TCGA-CG-5722                     TCGA-CG-5723 
"DEL PEAK 32(15Q15.1) WILD-TYPE" "DEL PEAK 32(15Q15.1) WILD-TYPE" 
                    TCGA-CG-5724                     TCGA-CG-5725 
  "DEL PEAK 32(15Q15.1) MUTATED" "DEL PEAK 32(15Q15.1) WILD-TYPE" 
                    TCGA-CG-5726                     TCGA-CG-5727 
"DEL PEAK 32(15Q15.1) WILD-TYPE" "DEL PEAK 32(15Q15.1) WILD-TYPE" 
                    TCGA-CG-5728                     TCGA-CG-5730 
"DEL PEAK 32(15Q15.1) WILD-TYPE" "DEL PEAK 32(15Q15.1) WILD-TYPE" 
                    TCGA-CG-5732                     TCGA-CG-5733 
  "DEL PEAK 32(15Q15.1) MUTATED" "DEL PEAK 32(15Q15.1) WILD-TYPE" 
                    TCGA-CG-5734                     TCGA-D7-5577 
"DEL PEAK 32(15Q15.1) WILD-TYPE" "DEL PEAK 32(15Q15.1) WILD-TYPE" 
                    TCGA-D7-5578                     TCGA-D7-5579 
  "DEL PEAK 32(15Q15.1) MUTATED" "DEL PEAK 32(15Q15.1) WILD-TYPE" 
                    TCGA-D7-6518                     TCGA-D7-6519 
  "DEL PEAK 32(15Q15.1) MUTATED"   "DEL PEAK 32(15Q15.1) MUTATED" 
                    TCGA-D7-6520                     TCGA-D7-6521 
  "DEL PEAK 32(15Q15.1) MUTATED" "DEL PEAK 32(15Q15.1) WILD-TYPE" 
                    TCGA-D7-6522                     TCGA-D7-6524 
"DEL PEAK 32(15Q15.1) WILD-TYPE" "DEL PEAK 32(15Q15.1) WILD-TYPE" 
                    TCGA-D7-6525                     TCGA-D7-6526 
  "DEL PEAK 32(15Q15.1) MUTATED"   "DEL PEAK 32(15Q15.1) MUTATED" 
                    TCGA-D7-6527                     TCGA-D7-6528 
  "DEL PEAK 32(15Q15.1) MUTATED"   "DEL PEAK 32(15Q15.1) MUTATED" 
                    TCGA-D7-6815                     TCGA-D7-6817 
"DEL PEAK 32(15Q15.1) WILD-TYPE"   "DEL PEAK 32(15Q15.1) MUTATED" 
                    TCGA-D7-6818                     TCGA-D7-6820 
"DEL PEAK 32(15Q15.1) WILD-TYPE" "DEL PEAK 32(15Q15.1) WILD-TYPE" 
                    TCGA-D7-6822                     TCGA-EQ-5647 
  "DEL PEAK 32(15Q15.1) MUTATED" "DEL PEAK 32(15Q15.1) WILD-TYPE" 
                    TCGA-EQ-8122                     TCGA-F1-6177 
"DEL PEAK 32(15Q15.1) WILD-TYPE" "DEL PEAK 32(15Q15.1) WILD-TYPE" 
                    TCGA-F1-6874                     TCGA-F1-6875 
"DEL PEAK 32(15Q15.1) WILD-TYPE"   "DEL PEAK 32(15Q15.1) MUTATED" 
                    TCGA-FP-7735                     TCGA-FP-7829 
"DEL PEAK 32(15Q15.1) WILD-TYPE" "DEL PEAK 32(15Q15.1) WILD-TYPE" 
                    TCGA-FP-7916                     TCGA-FP-7998 
"DEL PEAK 32(15Q15.1) WILD-TYPE"   "DEL PEAK 32(15Q15.1) MUTATED" 
                    TCGA-HJ-7597                     TCGA-IN-7806 
  "DEL PEAK 32(15Q15.1) MUTATED" "DEL PEAK 32(15Q15.1) WILD-TYPE" 
                    TCGA-IN-7808                     TCGA-IP-7968 
"DEL PEAK 32(15Q15.1) WILD-TYPE"   "DEL PEAK 32(15Q15.1) MUTATED" 
                    TCGA-B7-5816                     TCGA-B7-5818 
"DEL PEAK 32(15Q15.1) WILD-TYPE" "DEL PEAK 32(15Q15.1) WILD-TYPE" 
                    TCGA-BR-6452                     TCGA-BR-6455 
"DEL PEAK 32(15Q15.1) WILD-TYPE" "DEL PEAK 32(15Q15.1) WILD-TYPE" 
                    TCGA-BR-6457                     TCGA-BR-6458 
"DEL PEAK 32(15Q15.1) WILD-TYPE" "DEL PEAK 32(15Q15.1) WILD-TYPE" 
                    TCGA-BR-6563                     TCGA-BR-6564 
"DEL PEAK 32(15Q15.1) WILD-TYPE" "DEL PEAK 32(15Q15.1) WILD-TYPE" 
                    TCGA-BR-6565                     TCGA-BR-6566 
  "DEL PEAK 32(15Q15.1) MUTATED" "DEL PEAK 32(15Q15.1) WILD-TYPE" 
                    TCGA-BR-6705                     TCGA-BR-6706 
"DEL PEAK 32(15Q15.1) WILD-TYPE" "DEL PEAK 32(15Q15.1) WILD-TYPE" 
                    TCGA-BR-6707                     TCGA-BR-6709 
"DEL PEAK 32(15Q15.1) WILD-TYPE"   "DEL PEAK 32(15Q15.1) MUTATED" 
                    TCGA-BR-6710                     TCGA-BR-6801 
"DEL PEAK 32(15Q15.1) WILD-TYPE" "DEL PEAK 32(15Q15.1) WILD-TYPE" 
                    TCGA-BR-6802                     TCGA-BR-6803 
"DEL PEAK 32(15Q15.1) WILD-TYPE" "DEL PEAK 32(15Q15.1) WILD-TYPE" 
                    TCGA-BR-6852                     TCGA-BR-7196 
"DEL PEAK 32(15Q15.1) WILD-TYPE" "DEL PEAK 32(15Q15.1) WILD-TYPE" 
                    TCGA-BR-7197                     TCGA-BR-7703 
"DEL PEAK 32(15Q15.1) WILD-TYPE" "DEL PEAK 32(15Q15.1) WILD-TYPE" 
                    TCGA-BR-7704                     TCGA-BR-7707 
  "DEL PEAK 32(15Q15.1) MUTATED" "DEL PEAK 32(15Q15.1) WILD-TYPE" 
                    TCGA-BR-7715                     TCGA-BR-7716 
"DEL PEAK 32(15Q15.1) WILD-TYPE" "DEL PEAK 32(15Q15.1) WILD-TYPE" 
                    TCGA-BR-7717                     TCGA-BR-7722 
"DEL PEAK 32(15Q15.1) WILD-TYPE" "DEL PEAK 32(15Q15.1) WILD-TYPE" 
                    TCGA-BR-7723                     TCGA-BR-7851 
"DEL PEAK 32(15Q15.1) WILD-TYPE" "DEL PEAK 32(15Q15.1) WILD-TYPE" 
                    TCGA-BR-7901                     TCGA-BR-7957 
  "DEL PEAK 32(15Q15.1) MUTATED" "DEL PEAK 32(15Q15.1) WILD-TYPE" 
                    TCGA-BR-7958                     TCGA-BR-7959 
"DEL PEAK 32(15Q15.1) WILD-TYPE" "DEL PEAK 32(15Q15.1) WILD-TYPE" 
                    TCGA-BR-8059                     TCGA-BR-8060 
"DEL PEAK 32(15Q15.1) WILD-TYPE" "DEL PEAK 32(15Q15.1) WILD-TYPE" 
                    TCGA-BR-8077                     TCGA-BR-8078 
"DEL PEAK 32(15Q15.1) WILD-TYPE" "DEL PEAK 32(15Q15.1) WILD-TYPE" 
                    TCGA-BR-8080                     TCGA-BR-8081 
"DEL PEAK 32(15Q15.1) WILD-TYPE" "DEL PEAK 32(15Q15.1) WILD-TYPE" 
                    TCGA-BR-8284                     TCGA-BR-8285 
"DEL PEAK 32(15Q15.1) WILD-TYPE" "DEL PEAK 32(15Q15.1) WILD-TYPE" 
                    TCGA-BR-8286                     TCGA-BR-8289 
"DEL PEAK 32(15Q15.1) WILD-TYPE" "DEL PEAK 32(15Q15.1) WILD-TYPE" 
                    TCGA-BR-8291                     TCGA-BR-8295 
"DEL PEAK 32(15Q15.1) WILD-TYPE" "DEL PEAK 32(15Q15.1) WILD-TYPE" 
                    TCGA-BR-8296                     TCGA-BR-8297 
"DEL PEAK 32(15Q15.1) WILD-TYPE" "DEL PEAK 32(15Q15.1) WILD-TYPE" 
                    TCGA-CD-5798                     TCGA-CD-5799 
"DEL PEAK 32(15Q15.1) WILD-TYPE" "DEL PEAK 32(15Q15.1) WILD-TYPE" 
                    TCGA-CD-5800                     TCGA-CD-5801 
"DEL PEAK 32(15Q15.1) WILD-TYPE"   "DEL PEAK 32(15Q15.1) MUTATED" 
                    TCGA-CD-5802                     TCGA-CD-5803 
"DEL PEAK 32(15Q15.1) WILD-TYPE" "DEL PEAK 32(15Q15.1) WILD-TYPE" 
                    TCGA-CG-4300                     TCGA-CG-4301 
  "DEL PEAK 32(15Q15.1) MUTATED" "DEL PEAK 32(15Q15.1) WILD-TYPE" 
                    TCGA-CG-4304                     TCGA-CG-4305 
"DEL PEAK 32(15Q15.1) WILD-TYPE" "DEL PEAK 32(15Q15.1) WILD-TYPE" 
                    TCGA-CG-4306                     TCGA-CG-4436 
"DEL PEAK 32(15Q15.1) WILD-TYPE"   "DEL PEAK 32(15Q15.1) MUTATED" 
                    TCGA-CG-4437                     TCGA-CG-4438 
"DEL PEAK 32(15Q15.1) WILD-TYPE"   "DEL PEAK 32(15Q15.1) MUTATED" 
                    TCGA-CG-4440                     TCGA-CG-4441 
  "DEL PEAK 32(15Q15.1) MUTATED"   "DEL PEAK 32(15Q15.1) MUTATED" 
                    TCGA-CG-4443                     TCGA-CG-4444 
"DEL PEAK 32(15Q15.1) WILD-TYPE"   "DEL PEAK 32(15Q15.1) MUTATED" 
                    TCGA-CG-4449                     TCGA-CG-4455 
"DEL PEAK 32(15Q15.1) WILD-TYPE" "DEL PEAK 32(15Q15.1) WILD-TYPE" 
                    TCGA-CG-4460                     TCGA-CG-4462 
"DEL PEAK 32(15Q15.1) WILD-TYPE" "DEL PEAK 32(15Q15.1) WILD-TYPE" 
                    TCGA-CG-4465                     TCGA-CG-4466 
"DEL PEAK 32(15Q15.1) WILD-TYPE"   "DEL PEAK 32(15Q15.1) MUTATED" 
                    TCGA-CG-4469                     TCGA-CG-4472 
"DEL PEAK 32(15Q15.1) WILD-TYPE" "DEL PEAK 32(15Q15.1) WILD-TYPE" 
                    TCGA-CG-4474                     TCGA-CG-4477 
"DEL PEAK 32(15Q15.1) WILD-TYPE"   "DEL PEAK 32(15Q15.1) MUTATED" 
                    TCGA-CG-5716                     TCGA-CG-5717 
"DEL PEAK 32(15Q15.1) WILD-TYPE" "DEL PEAK 32(15Q15.1) WILD-TYPE" 
                    TCGA-CG-5718                     TCGA-CG-5719 
"DEL PEAK 32(15Q15.1) WILD-TYPE"   "DEL PEAK 32(15Q15.1) MUTATED" 
                    TCGA-CG-5720                     TCGA-CG-5721 
"DEL PEAK 32(15Q15.1) WILD-TYPE" "DEL PEAK 32(15Q15.1) WILD-TYPE" 
                    TCGA-CG-5722                     TCGA-CG-5723 
"DEL PEAK 32(15Q15.1) WILD-TYPE" "DEL PEAK 32(15Q15.1) WILD-TYPE" 
                    TCGA-CG-5724                     TCGA-CG-5725 
  "DEL PEAK 32(15Q15.1) MUTATED" "DEL PEAK 32(15Q15.1) WILD-TYPE" 
                    TCGA-CG-5726                     TCGA-CG-5727 
"DEL PEAK 32(15Q15.1) WILD-TYPE" "DEL PEAK 32(15Q15.1) WILD-TYPE" 
                    TCGA-CG-5728                     TCGA-CG-5730 
"DEL PEAK 32(15Q15.1) WILD-TYPE" "DEL PEAK 32(15Q15.1) WILD-TYPE" 
                    TCGA-CG-5732                     TCGA-CG-5733 
  "DEL PEAK 32(15Q15.1) MUTATED" "DEL PEAK 32(15Q15.1) WILD-TYPE" 
                    TCGA-CG-5734                     TCGA-D7-5577 
"DEL PEAK 32(15Q15.1) WILD-TYPE" "DEL PEAK 32(15Q15.1) WILD-TYPE" 
                    TCGA-D7-5578                     TCGA-D7-5579 
  "DEL PEAK 32(15Q15.1) MUTATED" "DEL PEAK 32(15Q15.1) WILD-TYPE" 
                    TCGA-D7-6518                     TCGA-D7-6519 
  "DEL PEAK 32(15Q15.1) MUTATED"   "DEL PEAK 32(15Q15.1) MUTATED" 
                    TCGA-D7-6520                     TCGA-D7-6521 
  "DEL PEAK 32(15Q15.1) MUTATED" "DEL PEAK 32(15Q15.1) WILD-TYPE" 
                    TCGA-D7-6522                     TCGA-D7-6524 
"DEL PEAK 32(15Q15.1) WILD-TYPE" "DEL PEAK 32(15Q15.1) WILD-TYPE" 
                    TCGA-D7-6525                     TCGA-D7-6526 
  "DEL PEAK 32(15Q15.1) MUTATED"   "DEL PEAK 32(15Q15.1) MUTATED" 
                    TCGA-D7-6527                     TCGA-D7-6528 
  "DEL PEAK 32(15Q15.1) MUTATED"   "DEL PEAK 32(15Q15.1) MUTATED" 
                    TCGA-D7-6815                     TCGA-D7-6817 
"DEL PEAK 32(15Q15.1) WILD-TYPE"   "DEL PEAK 32(15Q15.1) MUTATED" 
                    TCGA-D7-6818                     TCGA-D7-6820 
"DEL PEAK 32(15Q15.1) WILD-TYPE" "DEL PEAK 32(15Q15.1) WILD-TYPE" 
                    TCGA-D7-6822                     TCGA-EQ-5647 
  "DEL PEAK 32(15Q15.1) MUTATED" "DEL PEAK 32(15Q15.1) WILD-TYPE" 
                    TCGA-EQ-8122                     TCGA-F1-6177 
"DEL PEAK 32(15Q15.1) WILD-TYPE" "DEL PEAK 32(15Q15.1) WILD-TYPE" 
                    TCGA-F1-6874                     TCGA-F1-6875 
"DEL PEAK 32(15Q15.1) WILD-TYPE"   "DEL PEAK 32(15Q15.1) MUTATED" 
                    TCGA-FP-7735                     TCGA-FP-7829 
"DEL PEAK 32(15Q15.1) WILD-TYPE" "DEL PEAK 32(15Q15.1) WILD-TYPE" 
                    TCGA-FP-7916                     TCGA-FP-7998 
"DEL PEAK 32(15Q15.1) WILD-TYPE"   "DEL PEAK 32(15Q15.1) MUTATED" 
                    TCGA-HJ-7597                     TCGA-IN-7806 
  "DEL PEAK 32(15Q15.1) MUTATED" "DEL PEAK 32(15Q15.1) WILD-TYPE" 
                    TCGA-IN-7808                     TCGA-IP-7968 
"DEL PEAK 32(15Q15.1) WILD-TYPE"   "DEL PEAK 32(15Q15.1) MUTATED" 
                    TCGA-B7-5816                     TCGA-B7-5818 
"DEL PEAK 32(15Q15.1) WILD-TYPE" "DEL PEAK 32(15Q15.1) WILD-TYPE" 
                    TCGA-BR-6452                     TCGA-BR-6455 
"DEL PEAK 32(15Q15.1) WILD-TYPE" "DEL PEAK 32(15Q15.1) WILD-TYPE" 
                    TCGA-BR-6457                     TCGA-BR-6458 
"DEL PEAK 32(15Q15.1) WILD-TYPE" "DEL PEAK 32(15Q15.1) WILD-TYPE" 
                    TCGA-BR-6563                     TCGA-BR-6564 
"DEL PEAK 32(15Q15.1) WILD-TYPE" "DEL PEAK 32(15Q15.1) WILD-TYPE" 
                    TCGA-BR-6565                     TCGA-BR-6566 
  "DEL PEAK 32(15Q15.1) MUTATED" "DEL PEAK 32(15Q15.1) WILD-TYPE" 
                    TCGA-BR-6705                     TCGA-BR-6706 
"DEL PEAK 32(15Q15.1) WILD-TYPE" "DEL PEAK 32(15Q15.1) WILD-TYPE" 
                    TCGA-BR-6707                     TCGA-BR-6709 
"DEL PEAK 32(15Q15.1) WILD-TYPE"   "DEL PEAK 32(15Q15.1) MUTATED" 
                    TCGA-BR-6710                     TCGA-BR-6801 
"DEL PEAK 32(15Q15.1) WILD-TYPE" "DEL PEAK 32(15Q15.1) WILD-TYPE" 
                    TCGA-BR-6802                     TCGA-BR-6803 
"DEL PEAK 32(15Q15.1) WILD-TYPE" "DEL PEAK 32(15Q15.1) WILD-TYPE" 
                    TCGA-BR-6852                     TCGA-BR-7196 
"DEL PEAK 32(15Q15.1) WILD-TYPE" "DEL PEAK 32(15Q15.1) WILD-TYPE" 
                    TCGA-BR-7197                     TCGA-BR-7703 
"DEL PEAK 32(15Q15.1) WILD-TYPE" "DEL PEAK 32(15Q15.1) WILD-TYPE" 
                    TCGA-BR-7704                     TCGA-BR-7707 
  "DEL PEAK 32(15Q15.1) MUTATED" "DEL PEAK 32(15Q15.1) WILD-TYPE" 
                    TCGA-BR-7715                     TCGA-BR-7716 
"DEL PEAK 32(15Q15.1) WILD-TYPE" "DEL PEAK 32(15Q15.1) WILD-TYPE" 
                    TCGA-BR-7717                     TCGA-BR-7722 
"DEL PEAK 32(15Q15.1) WILD-TYPE" "DEL PEAK 32(15Q15.1) WILD-TYPE" 
                    TCGA-BR-7723                     TCGA-BR-7851 
"DEL PEAK 32(15Q15.1) WILD-TYPE" "DEL PEAK 32(15Q15.1) WILD-TYPE" 
                    TCGA-BR-7901                     TCGA-BR-7957 
  "DEL PEAK 32(15Q15.1) MUTATED" "DEL PEAK 32(15Q15.1) WILD-TYPE" 
                    TCGA-BR-7958                     TCGA-BR-7959 
"DEL PEAK 32(15Q15.1) WILD-TYPE" "DEL PEAK 32(15Q15.1) WILD-TYPE" 
                    TCGA-BR-8059                     TCGA-BR-8060 
"DEL PEAK 32(15Q15.1) WILD-TYPE" "DEL PEAK 32(15Q15.1) WILD-TYPE" 
                    TCGA-BR-8077                     TCGA-BR-8078 
"DEL PEAK 32(15Q15.1) WILD-TYPE" "DEL PEAK 32(15Q15.1) WILD-TYPE" 
                    TCGA-BR-8080                     TCGA-BR-8081 
"DEL PEAK 32(15Q15.1) WILD-TYPE" "DEL PEAK 32(15Q15.1) WILD-TYPE" 
                    TCGA-BR-8284                     TCGA-BR-8285 
"DEL PEAK 32(15Q15.1) WILD-TYPE" "DEL PEAK 32(15Q15.1) WILD-TYPE" 
                    TCGA-BR-8286                     TCGA-BR-8289 
"DEL PEAK 32(15Q15.1) WILD-TYPE" "DEL PEAK 32(15Q15.1) WILD-TYPE" 
                    TCGA-BR-8291                     TCGA-BR-8295 
"DEL PEAK 32(15Q15.1) WILD-TYPE" "DEL PEAK 32(15Q15.1) WILD-TYPE" 
                    TCGA-BR-8296                     TCGA-BR-8297 
"DEL PEAK 32(15Q15.1) WILD-TYPE" "DEL PEAK 32(15Q15.1) WILD-TYPE" 
                    TCGA-CD-5798                     TCGA-CD-5799 
"DEL PEAK 32(15Q15.1) WILD-TYPE" "DEL PEAK 32(15Q15.1) WILD-TYPE" 
                    TCGA-CD-5800                     TCGA-CD-5801 
"DEL PEAK 32(15Q15.1) WILD-TYPE"   "DEL PEAK 32(15Q15.1) MUTATED" 
                    TCGA-CD-5802                     TCGA-CD-5803 
"DEL PEAK 32(15Q15.1) WILD-TYPE" "DEL PEAK 32(15Q15.1) WILD-TYPE" 
                    TCGA-CG-4300                     TCGA-CG-4301 
  "DEL PEAK 32(15Q15.1) MUTATED" "DEL PEAK 32(15Q15.1) WILD-TYPE" 
                    TCGA-CG-4304                     TCGA-CG-4305 
"DEL PEAK 32(15Q15.1) WILD-TYPE" "DEL PEAK 32(15Q15.1) WILD-TYPE" 
                    TCGA-CG-4306                     TCGA-CG-4436 
"DEL PEAK 32(15Q15.1) WILD-TYPE"   "DEL PEAK 32(15Q15.1) MUTATED" 
                    TCGA-CG-4437                     TCGA-CG-4438 
"DEL PEAK 32(15Q15.1) WILD-TYPE"   "DEL PEAK 32(15Q15.1) MUTATED" 
                    TCGA-CG-4440                     TCGA-CG-4441 
  "DEL PEAK 32(15Q15.1) MUTATED"   "DEL PEAK 32(15Q15.1) MUTATED" 
                    TCGA-CG-4443                     TCGA-CG-4444 
"DEL PEAK 32(15Q15.1) WILD-TYPE"   "DEL PEAK 32(15Q15.1) MUTATED" 
                    TCGA-CG-4449                     TCGA-CG-4455 
"DEL PEAK 32(15Q15.1) WILD-TYPE" "DEL PEAK 32(15Q15.1) WILD-TYPE" 
                    TCGA-CG-4460                     TCGA-CG-4462 
"DEL PEAK 32(15Q15.1) WILD-TYPE" "DEL PEAK 32(15Q15.1) WILD-TYPE" 
                    TCGA-CG-4465                     TCGA-CG-4466 
"DEL PEAK 32(15Q15.1) WILD-TYPE"   "DEL PEAK 32(15Q15.1) MUTATED" 
                    TCGA-CG-4469                     TCGA-CG-4472 
"DEL PEAK 32(15Q15.1) WILD-TYPE" "DEL PEAK 32(15Q15.1) WILD-TYPE" 
                    TCGA-CG-4474                     TCGA-CG-4477 
"DEL PEAK 32(15Q15.1) WILD-TYPE"   "DEL PEAK 32(15Q15.1) MUTATED" 
                    TCGA-CG-5716                     TCGA-CG-5717 
"DEL PEAK 32(15Q15.1) WILD-TYPE" "DEL PEAK 32(15Q15.1) WILD-TYPE" 
                    TCGA-CG-5718                     TCGA-CG-5719 
"DEL PEAK 32(15Q15.1) WILD-TYPE"   "DEL PEAK 32(15Q15.1) MUTATED" 
                    TCGA-CG-5720                     TCGA-CG-5721 
"DEL PEAK 32(15Q15.1) WILD-TYPE" "DEL PEAK 32(15Q15.1) WILD-TYPE" 
                    TCGA-CG-5722                     TCGA-CG-5723 
"DEL PEAK 32(15Q15.1) WILD-TYPE" "DEL PEAK 32(15Q15.1) WILD-TYPE" 
                    TCGA-CG-5724                     TCGA-CG-5725 
  "DEL PEAK 32(15Q15.1) MUTATED" "DEL PEAK 32(15Q15.1) WILD-TYPE" 
                    TCGA-CG-5726                     TCGA-CG-5727 
"DEL PEAK 32(15Q15.1) WILD-TYPE" "DEL PEAK 32(15Q15.1) WILD-TYPE" 
                    TCGA-CG-5728                     TCGA-CG-5730 
"DEL PEAK 32(15Q15.1) WILD-TYPE" "DEL PEAK 32(15Q15.1) WILD-TYPE" 
                    TCGA-CG-5732                     TCGA-CG-5733 
  "DEL PEAK 32(15Q15.1) MUTATED" "DEL PEAK 32(15Q15.1) WILD-TYPE" 
                    TCGA-CG-5734                     TCGA-D7-5577 
"DEL PEAK 32(15Q15.1) WILD-TYPE" "DEL PEAK 32(15Q15.1) WILD-TYPE" 
                    TCGA-D7-5578                     TCGA-D7-5579 
  "DEL PEAK 32(15Q15.1) MUTATED" "DEL PEAK 32(15Q15.1) WILD-TYPE" 
                    TCGA-D7-6518                     TCGA-D7-6519 
  "DEL PEAK 32(15Q15.1) MUTATED"   "DEL PEAK 32(15Q15.1) MUTATED" 
                    TCGA-D7-6520                     TCGA-D7-6521 
  "DEL PEAK 32(15Q15.1) MUTATED" "DEL PEAK 32(15Q15.1) WILD-TYPE" 
                    TCGA-D7-6522                     TCGA-D7-6524 
"DEL PEAK 32(15Q15.1) WILD-TYPE" "DEL PEAK 32(15Q15.1) WILD-TYPE" 
                    TCGA-D7-6525                     TCGA-D7-6526 
  "DEL PEAK 32(15Q15.1) MUTATED"   "DEL PEAK 32(15Q15.1) MUTATED" 
                    TCGA-D7-6527                     TCGA-D7-6528 
  "DEL PEAK 32(15Q15.1) MUTATED"   "DEL PEAK 32(15Q15.1) MUTATED" 
                    TCGA-D7-6815                     TCGA-D7-6817 
"DEL PEAK 32(15Q15.1) WILD-TYPE"   "DEL PEAK 32(15Q15.1) MUTATED" 
                    TCGA-D7-6818                     TCGA-D7-6820 
"DEL PEAK 32(15Q15.1) WILD-TYPE" "DEL PEAK 32(15Q15.1) WILD-TYPE" 
                    TCGA-D7-6822                     TCGA-EQ-5647 
  "DEL PEAK 32(15Q15.1) MUTATED" "DEL PEAK 32(15Q15.1) WILD-TYPE" 
                    TCGA-EQ-8122                     TCGA-F1-6177 
"DEL PEAK 32(15Q15.1) WILD-TYPE" "DEL PEAK 32(15Q15.1) WILD-TYPE" 
                    TCGA-F1-6874                     TCGA-F1-6875 
"DEL PEAK 32(15Q15.1) WILD-TYPE"   "DEL PEAK 32(15Q15.1) MUTATED" 
                    TCGA-FP-7735                     TCGA-FP-7829 
"DEL PEAK 32(15Q15.1) WILD-TYPE" "DEL PEAK 32(15Q15.1) WILD-TYPE" 
                    TCGA-FP-7916                     TCGA-FP-7998 
"DEL PEAK 32(15Q15.1) WILD-TYPE"   "DEL PEAK 32(15Q15.1) MUTATED" 
                    TCGA-HJ-7597                     TCGA-IN-7806 
  "DEL PEAK 32(15Q15.1) MUTATED" "DEL PEAK 32(15Q15.1) WILD-TYPE" 
                    TCGA-IN-7808                     TCGA-IP-7968 
"DEL PEAK 32(15Q15.1) WILD-TYPE"   "DEL PEAK 32(15Q15.1) MUTATED" 
[1] "hr=" "2"  
D58V2, continuous
D58V3, binary
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  DEL PEAK 32(15Q15.1) MUTATED     13   27
  DEL PEAK 32(15Q15.1) WILD-TYPE   52   69
        clus
vv       DEL PEAK 32(15Q15.1) MUTATED DEL PEAK 32(15Q15.1) WILD-TYPE
  FEMALE                           13                             52
  MALE                             27                             69
D58V4, multiclass
D58V5, multiclass
    clus
vv   DEL PEAK 32(15Q15.1) MUTATED DEL PEAK 32(15Q15.1) WILD-TYPE
  T1                            0                              6
  T2                           20                             33
  T3                           14                             45
  T4                            3                             30
D58V6, multiclass
    clus
vv   DEL PEAK 32(15Q15.1) MUTATED DEL PEAK 32(15Q15.1) WILD-TYPE
  N0                           13                             37
  N1                            5                             52
  N2                           10                             14
  N3                            7                             12
D58V7, multiclass
    clus
vv   DEL PEAK 32(15Q15.1) MUTATED DEL PEAK 32(15Q15.1) WILD-TYPE
  M0                           32                            100
  M1                            3                             15
  MX                            5                              6
D58V8, multiclass
     clus
vv    DEL PEAK 32(15Q15.1) MUTATED DEL PEAK 32(15Q15.1) WILD-TYPE
  I                              9                             16
  II                             5                             38
  III                           14                             34
  IV                             7                             22
D58V9, binary
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  DEL PEAK 32(15Q15.1) MUTATED     37    3
  DEL PEAK 32(15Q15.1) WILD-TYPE  119    2
     clus
vv    DEL PEAK 32(15Q15.1) MUTATED DEL PEAK 32(15Q15.1) WILD-TYPE
  NO                             3                              2
  YES                           37                            119

Clustering(59) Variable = Del Peak 33(16p13.3) mutation analysis
D59V1, survival
                    TCGA-B7-5816                     TCGA-B7-5818 
"DEL PEAK 33(16P13.3) WILD-TYPE" "DEL PEAK 33(16P13.3) WILD-TYPE" 
                    TCGA-BR-6452                     TCGA-BR-6455 
"DEL PEAK 33(16P13.3) WILD-TYPE" "DEL PEAK 33(16P13.3) WILD-TYPE" 
                    TCGA-BR-6457                     TCGA-BR-6458 
"DEL PEAK 33(16P13.3) WILD-TYPE" "DEL PEAK 33(16P13.3) WILD-TYPE" 
                    TCGA-BR-6563                     TCGA-BR-6564 
"DEL PEAK 33(16P13.3) WILD-TYPE" "DEL PEAK 33(16P13.3) WILD-TYPE" 
                    TCGA-BR-6565                     TCGA-BR-6566 
"DEL PEAK 33(16P13.3) WILD-TYPE" "DEL PEAK 33(16P13.3) WILD-TYPE" 
                    TCGA-BR-6705                     TCGA-BR-6706 
"DEL PEAK 33(16P13.3) WILD-TYPE" "DEL PEAK 33(16P13.3) WILD-TYPE" 
                    TCGA-BR-6707                     TCGA-BR-6709 
"DEL PEAK 33(16P13.3) WILD-TYPE" "DEL PEAK 33(16P13.3) WILD-TYPE" 
                    TCGA-BR-6710                     TCGA-BR-6801 
"DEL PEAK 33(16P13.3) WILD-TYPE" "DEL PEAK 33(16P13.3) WILD-TYPE" 
                    TCGA-BR-6802                     TCGA-BR-6803 
"DEL PEAK 33(16P13.3) WILD-TYPE" "DEL PEAK 33(16P13.3) WILD-TYPE" 
                    TCGA-BR-6852                     TCGA-BR-7196 
"DEL PEAK 33(16P13.3) WILD-TYPE" "DEL PEAK 33(16P13.3) WILD-TYPE" 
                    TCGA-BR-7197                     TCGA-BR-7703 
  "DEL PEAK 33(16P13.3) MUTATED" "DEL PEAK 33(16P13.3) WILD-TYPE" 
                    TCGA-BR-7704                     TCGA-BR-7707 
"DEL PEAK 33(16P13.3) WILD-TYPE" "DEL PEAK 33(16P13.3) WILD-TYPE" 
                    TCGA-BR-7715                     TCGA-BR-7716 
  "DEL PEAK 33(16P13.3) MUTATED"   "DEL PEAK 33(16P13.3) MUTATED" 
                    TCGA-BR-7717                     TCGA-BR-7722 
"DEL PEAK 33(16P13.3) WILD-TYPE" "DEL PEAK 33(16P13.3) WILD-TYPE" 
                    TCGA-BR-7723                     TCGA-BR-7851 
"DEL PEAK 33(16P13.3) WILD-TYPE" "DEL PEAK 33(16P13.3) WILD-TYPE" 
                    TCGA-BR-7901                     TCGA-BR-7957 
  "DEL PEAK 33(16P13.3) MUTATED" "DEL PEAK 33(16P13.3) WILD-TYPE" 
                    TCGA-BR-7958                     TCGA-BR-7959 
"DEL PEAK 33(16P13.3) WILD-TYPE" "DEL PEAK 33(16P13.3) WILD-TYPE" 
                    TCGA-BR-8059                     TCGA-BR-8060 
"DEL PEAK 33(16P13.3) WILD-TYPE" "DEL PEAK 33(16P13.3) WILD-TYPE" 
                    TCGA-BR-8077                     TCGA-BR-8078 
"DEL PEAK 33(16P13.3) WILD-TYPE" "DEL PEAK 33(16P13.3) WILD-TYPE" 
                    TCGA-BR-8080                     TCGA-BR-8081 
"DEL PEAK 33(16P13.3) WILD-TYPE" "DEL PEAK 33(16P13.3) WILD-TYPE" 
                    TCGA-BR-8284                     TCGA-BR-8285 
"DEL PEAK 33(16P13.3) WILD-TYPE" "DEL PEAK 33(16P13.3) WILD-TYPE" 
                    TCGA-BR-8286                     TCGA-BR-8289 
"DEL PEAK 33(16P13.3) WILD-TYPE" "DEL PEAK 33(16P13.3) WILD-TYPE" 
                    TCGA-BR-8291                     TCGA-BR-8295 
"DEL PEAK 33(16P13.3) WILD-TYPE" "DEL PEAK 33(16P13.3) WILD-TYPE" 
                    TCGA-BR-8296                     TCGA-BR-8297 
"DEL PEAK 33(16P13.3) WILD-TYPE" "DEL PEAK 33(16P13.3) WILD-TYPE" 
                    TCGA-CD-5798                     TCGA-CD-5799 
"DEL PEAK 33(16P13.3) WILD-TYPE" "DEL PEAK 33(16P13.3) WILD-TYPE" 
                    TCGA-CD-5800                     TCGA-CD-5801 
"DEL PEAK 33(16P13.3) WILD-TYPE" "DEL PEAK 33(16P13.3) WILD-TYPE" 
                    TCGA-CD-5802                     TCGA-CD-5803 
"DEL PEAK 33(16P13.3) WILD-TYPE"   "DEL PEAK 33(16P13.3) MUTATED" 
                    TCGA-CG-4300                     TCGA-CG-4301 
"DEL PEAK 33(16P13.3) WILD-TYPE" "DEL PEAK 33(16P13.3) WILD-TYPE" 
                    TCGA-CG-4304                     TCGA-CG-4305 
"DEL PEAK 33(16P13.3) WILD-TYPE" "DEL PEAK 33(16P13.3) WILD-TYPE" 
                    TCGA-CG-4306                     TCGA-CG-4436 
"DEL PEAK 33(16P13.3) WILD-TYPE" "DEL PEAK 33(16P13.3) WILD-TYPE" 
                    TCGA-CG-4437                     TCGA-CG-4438 
"DEL PEAK 33(16P13.3) WILD-TYPE" "DEL PEAK 33(16P13.3) WILD-TYPE" 
                    TCGA-CG-4440                     TCGA-CG-4441 
"DEL PEAK 33(16P13.3) WILD-TYPE" "DEL PEAK 33(16P13.3) WILD-TYPE" 
                    TCGA-CG-4443                     TCGA-CG-4444 
"DEL PEAK 33(16P13.3) WILD-TYPE" "DEL PEAK 33(16P13.3) WILD-TYPE" 
                    TCGA-CG-4449                     TCGA-CG-4455 
  "DEL PEAK 33(16P13.3) MUTATED"   "DEL PEAK 33(16P13.3) MUTATED" 
                    TCGA-CG-4460                     TCGA-CG-4462 
"DEL PEAK 33(16P13.3) WILD-TYPE" "DEL PEAK 33(16P13.3) WILD-TYPE" 
                    TCGA-CG-4465                     TCGA-CG-4466 
"DEL PEAK 33(16P13.3) WILD-TYPE" "DEL PEAK 33(16P13.3) WILD-TYPE" 
                    TCGA-CG-4469                     TCGA-CG-4472 
"DEL PEAK 33(16P13.3) WILD-TYPE" "DEL PEAK 33(16P13.3) WILD-TYPE" 
                    TCGA-CG-4474                     TCGA-CG-4477 
"DEL PEAK 33(16P13.3) WILD-TYPE" "DEL PEAK 33(16P13.3) WILD-TYPE" 
                    TCGA-CG-5716                     TCGA-CG-5717 
"DEL PEAK 33(16P13.3) WILD-TYPE" "DEL PEAK 33(16P13.3) WILD-TYPE" 
                    TCGA-CG-5718                     TCGA-CG-5719 
"DEL PEAK 33(16P13.3) WILD-TYPE" "DEL PEAK 33(16P13.3) WILD-TYPE" 
                    TCGA-CG-5720                     TCGA-CG-5721 
"DEL PEAK 33(16P13.3) WILD-TYPE" "DEL PEAK 33(16P13.3) WILD-TYPE" 
                    TCGA-CG-5722                     TCGA-CG-5723 
"DEL PEAK 33(16P13.3) WILD-TYPE" "DEL PEAK 33(16P13.3) WILD-TYPE" 
                    TCGA-CG-5724                     TCGA-CG-5725 
  "DEL PEAK 33(16P13.3) MUTATED" "DEL PEAK 33(16P13.3) WILD-TYPE" 
                    TCGA-CG-5726                     TCGA-CG-5727 
"DEL PEAK 33(16P13.3) WILD-TYPE" "DEL PEAK 33(16P13.3) WILD-TYPE" 
                    TCGA-CG-5728                     TCGA-CG-5730 
"DEL PEAK 33(16P13.3) WILD-TYPE" "DEL PEAK 33(16P13.3) WILD-TYPE" 
                    TCGA-CG-5732                     TCGA-CG-5733 
"DEL PEAK 33(16P13.3) WILD-TYPE" "DEL PEAK 33(16P13.3) WILD-TYPE" 
                    TCGA-CG-5734                     TCGA-D7-5577 
"DEL PEAK 33(16P13.3) WILD-TYPE" "DEL PEAK 33(16P13.3) WILD-TYPE" 
                    TCGA-D7-5578                     TCGA-D7-5579 
"DEL PEAK 33(16P13.3) WILD-TYPE"   "DEL PEAK 33(16P13.3) MUTATED" 
                    TCGA-D7-6518                     TCGA-D7-6519 
"DEL PEAK 33(16P13.3) WILD-TYPE" "DEL PEAK 33(16P13.3) WILD-TYPE" 
                    TCGA-D7-6520                     TCGA-D7-6521 
"DEL PEAK 33(16P13.3) WILD-TYPE" "DEL PEAK 33(16P13.3) WILD-TYPE" 
                    TCGA-D7-6522                     TCGA-D7-6524 
"DEL PEAK 33(16P13.3) WILD-TYPE" "DEL PEAK 33(16P13.3) WILD-TYPE" 
                    TCGA-D7-6525                     TCGA-D7-6526 
"DEL PEAK 33(16P13.3) WILD-TYPE" "DEL PEAK 33(16P13.3) WILD-TYPE" 
                    TCGA-D7-6527                     TCGA-D7-6528 
"DEL PEAK 33(16P13.3) WILD-TYPE"   "DEL PEAK 33(16P13.3) MUTATED" 
                    TCGA-D7-6815                     TCGA-D7-6817 
"DEL PEAK 33(16P13.3) WILD-TYPE" "DEL PEAK 33(16P13.3) WILD-TYPE" 
                    TCGA-D7-6818                     TCGA-D7-6820 
"DEL PEAK 33(16P13.3) WILD-TYPE" "DEL PEAK 33(16P13.3) WILD-TYPE" 
                    TCGA-D7-6822                     TCGA-EQ-5647 
  "DEL PEAK 33(16P13.3) MUTATED" "DEL PEAK 33(16P13.3) WILD-TYPE" 
                    TCGA-EQ-8122                     TCGA-F1-6177 
"DEL PEAK 33(16P13.3) WILD-TYPE" "DEL PEAK 33(16P13.3) WILD-TYPE" 
                    TCGA-F1-6874                     TCGA-F1-6875 
"DEL PEAK 33(16P13.3) WILD-TYPE"   "DEL PEAK 33(16P13.3) MUTATED" 
                    TCGA-FP-7735                     TCGA-FP-7829 
"DEL PEAK 33(16P13.3) WILD-TYPE" "DEL PEAK 33(16P13.3) WILD-TYPE" 
                    TCGA-FP-7916                     TCGA-FP-7998 
"DEL PEAK 33(16P13.3) WILD-TYPE" "DEL PEAK 33(16P13.3) WILD-TYPE" 
                    TCGA-HJ-7597                     TCGA-IN-7806 
"DEL PEAK 33(16P13.3) WILD-TYPE" "DEL PEAK 33(16P13.3) WILD-TYPE" 
                    TCGA-IN-7808                     TCGA-IP-7968 
"DEL PEAK 33(16P13.3) WILD-TYPE" "DEL PEAK 33(16P13.3) WILD-TYPE" 
                    TCGA-B7-5816                     TCGA-B7-5818 
"DEL PEAK 33(16P13.3) WILD-TYPE" "DEL PEAK 33(16P13.3) WILD-TYPE" 
                    TCGA-BR-6452                     TCGA-BR-6455 
"DEL PEAK 33(16P13.3) WILD-TYPE" "DEL PEAK 33(16P13.3) WILD-TYPE" 
                    TCGA-BR-6457                     TCGA-BR-6458 
"DEL PEAK 33(16P13.3) WILD-TYPE" "DEL PEAK 33(16P13.3) WILD-TYPE" 
                    TCGA-BR-6563                     TCGA-BR-6564 
"DEL PEAK 33(16P13.3) WILD-TYPE" "DEL PEAK 33(16P13.3) WILD-TYPE" 
                    TCGA-BR-6565                     TCGA-BR-6566 
"DEL PEAK 33(16P13.3) WILD-TYPE" "DEL PEAK 33(16P13.3) WILD-TYPE" 
                    TCGA-BR-6705                     TCGA-BR-6706 
"DEL PEAK 33(16P13.3) WILD-TYPE" "DEL PEAK 33(16P13.3) WILD-TYPE" 
                    TCGA-BR-6707                     TCGA-BR-6709 
"DEL PEAK 33(16P13.3) WILD-TYPE" "DEL PEAK 33(16P13.3) WILD-TYPE" 
                    TCGA-BR-6710                     TCGA-BR-6801 
"DEL PEAK 33(16P13.3) WILD-TYPE" "DEL PEAK 33(16P13.3) WILD-TYPE" 
                    TCGA-BR-6802                     TCGA-BR-6803 
"DEL PEAK 33(16P13.3) WILD-TYPE" "DEL PEAK 33(16P13.3) WILD-TYPE" 
                    TCGA-BR-6852                     TCGA-BR-7196 
"DEL PEAK 33(16P13.3) WILD-TYPE" "DEL PEAK 33(16P13.3) WILD-TYPE" 
                    TCGA-BR-7197                     TCGA-BR-7703 
  "DEL PEAK 33(16P13.3) MUTATED" "DEL PEAK 33(16P13.3) WILD-TYPE" 
                    TCGA-BR-7704                     TCGA-BR-7707 
"DEL PEAK 33(16P13.3) WILD-TYPE" "DEL PEAK 33(16P13.3) WILD-TYPE" 
                    TCGA-BR-7715                     TCGA-BR-7716 
  "DEL PEAK 33(16P13.3) MUTATED"   "DEL PEAK 33(16P13.3) MUTATED" 
                    TCGA-BR-7717                     TCGA-BR-7722 
"DEL PEAK 33(16P13.3) WILD-TYPE" "DEL PEAK 33(16P13.3) WILD-TYPE" 
                    TCGA-BR-7723                     TCGA-BR-7851 
"DEL PEAK 33(16P13.3) WILD-TYPE" "DEL PEAK 33(16P13.3) WILD-TYPE" 
                    TCGA-BR-7901                     TCGA-BR-7957 
  "DEL PEAK 33(16P13.3) MUTATED" "DEL PEAK 33(16P13.3) WILD-TYPE" 
                    TCGA-BR-7958                     TCGA-BR-7959 
"DEL PEAK 33(16P13.3) WILD-TYPE" "DEL PEAK 33(16P13.3) WILD-TYPE" 
                    TCGA-BR-8059                     TCGA-BR-8060 
"DEL PEAK 33(16P13.3) WILD-TYPE" "DEL PEAK 33(16P13.3) WILD-TYPE" 
                    TCGA-BR-8077                     TCGA-BR-8078 
"DEL PEAK 33(16P13.3) WILD-TYPE" "DEL PEAK 33(16P13.3) WILD-TYPE" 
                    TCGA-BR-8080                     TCGA-BR-8081 
"DEL PEAK 33(16P13.3) WILD-TYPE" "DEL PEAK 33(16P13.3) WILD-TYPE" 
                    TCGA-BR-8284                     TCGA-BR-8285 
"DEL PEAK 33(16P13.3) WILD-TYPE" "DEL PEAK 33(16P13.3) WILD-TYPE" 
                    TCGA-BR-8286                     TCGA-BR-8289 
"DEL PEAK 33(16P13.3) WILD-TYPE" "DEL PEAK 33(16P13.3) WILD-TYPE" 
                    TCGA-BR-8291                     TCGA-BR-8295 
"DEL PEAK 33(16P13.3) WILD-TYPE" "DEL PEAK 33(16P13.3) WILD-TYPE" 
                    TCGA-BR-8296                     TCGA-BR-8297 
"DEL PEAK 33(16P13.3) WILD-TYPE" "DEL PEAK 33(16P13.3) WILD-TYPE" 
                    TCGA-CD-5798                     TCGA-CD-5799 
"DEL PEAK 33(16P13.3) WILD-TYPE" "DEL PEAK 33(16P13.3) WILD-TYPE" 
                    TCGA-CD-5800                     TCGA-CD-5801 
"DEL PEAK 33(16P13.3) WILD-TYPE" "DEL PEAK 33(16P13.3) WILD-TYPE" 
                    TCGA-CD-5802                     TCGA-CD-5803 
"DEL PEAK 33(16P13.3) WILD-TYPE"   "DEL PEAK 33(16P13.3) MUTATED" 
                    TCGA-CG-4300                     TCGA-CG-4301 
"DEL PEAK 33(16P13.3) WILD-TYPE" "DEL PEAK 33(16P13.3) WILD-TYPE" 
                    TCGA-CG-4304                     TCGA-CG-4305 
"DEL PEAK 33(16P13.3) WILD-TYPE" "DEL PEAK 33(16P13.3) WILD-TYPE" 
                    TCGA-CG-4306                     TCGA-CG-4436 
"DEL PEAK 33(16P13.3) WILD-TYPE" "DEL PEAK 33(16P13.3) WILD-TYPE" 
                    TCGA-CG-4437                     TCGA-CG-4438 
"DEL PEAK 33(16P13.3) WILD-TYPE" "DEL PEAK 33(16P13.3) WILD-TYPE" 
                    TCGA-CG-4440                     TCGA-CG-4441 
"DEL PEAK 33(16P13.3) WILD-TYPE" "DEL PEAK 33(16P13.3) WILD-TYPE" 
                    TCGA-CG-4443                     TCGA-CG-4444 
"DEL PEAK 33(16P13.3) WILD-TYPE" "DEL PEAK 33(16P13.3) WILD-TYPE" 
                    TCGA-CG-4449                     TCGA-CG-4455 
  "DEL PEAK 33(16P13.3) MUTATED"   "DEL PEAK 33(16P13.3) MUTATED" 
                    TCGA-CG-4460                     TCGA-CG-4462 
"DEL PEAK 33(16P13.3) WILD-TYPE" "DEL PEAK 33(16P13.3) WILD-TYPE" 
                    TCGA-CG-4465                     TCGA-CG-4466 
"DEL PEAK 33(16P13.3) WILD-TYPE" "DEL PEAK 33(16P13.3) WILD-TYPE" 
                    TCGA-CG-4469                     TCGA-CG-4472 
"DEL PEAK 33(16P13.3) WILD-TYPE" "DEL PEAK 33(16P13.3) WILD-TYPE" 
                    TCGA-CG-4474                     TCGA-CG-4477 
"DEL PEAK 33(16P13.3) WILD-TYPE" "DEL PEAK 33(16P13.3) WILD-TYPE" 
                    TCGA-CG-5716                     TCGA-CG-5717 
"DEL PEAK 33(16P13.3) WILD-TYPE" "DEL PEAK 33(16P13.3) WILD-TYPE" 
                    TCGA-CG-5718                     TCGA-CG-5719 
"DEL PEAK 33(16P13.3) WILD-TYPE" "DEL PEAK 33(16P13.3) WILD-TYPE" 
                    TCGA-CG-5720                     TCGA-CG-5721 
"DEL PEAK 33(16P13.3) WILD-TYPE" "DEL PEAK 33(16P13.3) WILD-TYPE" 
                    TCGA-CG-5722                     TCGA-CG-5723 
"DEL PEAK 33(16P13.3) WILD-TYPE" "DEL PEAK 33(16P13.3) WILD-TYPE" 
                    TCGA-CG-5724                     TCGA-CG-5725 
  "DEL PEAK 33(16P13.3) MUTATED" "DEL PEAK 33(16P13.3) WILD-TYPE" 
                    TCGA-CG-5726                     TCGA-CG-5727 
"DEL PEAK 33(16P13.3) WILD-TYPE" "DEL PEAK 33(16P13.3) WILD-TYPE" 
                    TCGA-CG-5728                     TCGA-CG-5730 
"DEL PEAK 33(16P13.3) WILD-TYPE" "DEL PEAK 33(16P13.3) WILD-TYPE" 
                    TCGA-CG-5732                     TCGA-CG-5733 
"DEL PEAK 33(16P13.3) WILD-TYPE" "DEL PEAK 33(16P13.3) WILD-TYPE" 
                    TCGA-CG-5734                     TCGA-D7-5577 
"DEL PEAK 33(16P13.3) WILD-TYPE" "DEL PEAK 33(16P13.3) WILD-TYPE" 
                    TCGA-D7-5578                     TCGA-D7-5579 
"DEL PEAK 33(16P13.3) WILD-TYPE"   "DEL PEAK 33(16P13.3) MUTATED" 
                    TCGA-D7-6518                     TCGA-D7-6519 
"DEL PEAK 33(16P13.3) WILD-TYPE" "DEL PEAK 33(16P13.3) WILD-TYPE" 
                    TCGA-D7-6520                     TCGA-D7-6521 
"DEL PEAK 33(16P13.3) WILD-TYPE" "DEL PEAK 33(16P13.3) WILD-TYPE" 
                    TCGA-D7-6522                     TCGA-D7-6524 
"DEL PEAK 33(16P13.3) WILD-TYPE" "DEL PEAK 33(16P13.3) WILD-TYPE" 
                    TCGA-D7-6525                     TCGA-D7-6526 
"DEL PEAK 33(16P13.3) WILD-TYPE" "DEL PEAK 33(16P13.3) WILD-TYPE" 
                    TCGA-D7-6527                     TCGA-D7-6528 
"DEL PEAK 33(16P13.3) WILD-TYPE"   "DEL PEAK 33(16P13.3) MUTATED" 
                    TCGA-D7-6815                     TCGA-D7-6817 
"DEL PEAK 33(16P13.3) WILD-TYPE" "DEL PEAK 33(16P13.3) WILD-TYPE" 
                    TCGA-D7-6818                     TCGA-D7-6820 
"DEL PEAK 33(16P13.3) WILD-TYPE" "DEL PEAK 33(16P13.3) WILD-TYPE" 
                    TCGA-D7-6822                     TCGA-EQ-5647 
  "DEL PEAK 33(16P13.3) MUTATED" "DEL PEAK 33(16P13.3) WILD-TYPE" 
                    TCGA-EQ-8122                     TCGA-F1-6177 
"DEL PEAK 33(16P13.3) WILD-TYPE" "DEL PEAK 33(16P13.3) WILD-TYPE" 
                    TCGA-F1-6874                     TCGA-F1-6875 
"DEL PEAK 33(16P13.3) WILD-TYPE"   "DEL PEAK 33(16P13.3) MUTATED" 
                    TCGA-FP-7735                     TCGA-FP-7829 
"DEL PEAK 33(16P13.3) WILD-TYPE" "DEL PEAK 33(16P13.3) WILD-TYPE" 
                    TCGA-FP-7916                     TCGA-FP-7998 
"DEL PEAK 33(16P13.3) WILD-TYPE" "DEL PEAK 33(16P13.3) WILD-TYPE" 
                    TCGA-HJ-7597                     TCGA-IN-7806 
"DEL PEAK 33(16P13.3) WILD-TYPE" "DEL PEAK 33(16P13.3) WILD-TYPE" 
                    TCGA-IN-7808                     TCGA-IP-7968 
"DEL PEAK 33(16P13.3) WILD-TYPE" "DEL PEAK 33(16P13.3) WILD-TYPE" 
                    TCGA-B7-5816                     TCGA-B7-5818 
"DEL PEAK 33(16P13.3) WILD-TYPE" "DEL PEAK 33(16P13.3) WILD-TYPE" 
                    TCGA-BR-6452                     TCGA-BR-6455 
"DEL PEAK 33(16P13.3) WILD-TYPE" "DEL PEAK 33(16P13.3) WILD-TYPE" 
                    TCGA-BR-6457                     TCGA-BR-6458 
"DEL PEAK 33(16P13.3) WILD-TYPE" "DEL PEAK 33(16P13.3) WILD-TYPE" 
                    TCGA-BR-6563                     TCGA-BR-6564 
"DEL PEAK 33(16P13.3) WILD-TYPE" "DEL PEAK 33(16P13.3) WILD-TYPE" 
                    TCGA-BR-6565                     TCGA-BR-6566 
"DEL PEAK 33(16P13.3) WILD-TYPE" "DEL PEAK 33(16P13.3) WILD-TYPE" 
                    TCGA-BR-6705                     TCGA-BR-6706 
"DEL PEAK 33(16P13.3) WILD-TYPE" "DEL PEAK 33(16P13.3) WILD-TYPE" 
                    TCGA-BR-6707                     TCGA-BR-6709 
"DEL PEAK 33(16P13.3) WILD-TYPE" "DEL PEAK 33(16P13.3) WILD-TYPE" 
                    TCGA-BR-6710                     TCGA-BR-6801 
"DEL PEAK 33(16P13.3) WILD-TYPE" "DEL PEAK 33(16P13.3) WILD-TYPE" 
                    TCGA-BR-6802                     TCGA-BR-6803 
"DEL PEAK 33(16P13.3) WILD-TYPE" "DEL PEAK 33(16P13.3) WILD-TYPE" 
                    TCGA-BR-6852                     TCGA-BR-7196 
"DEL PEAK 33(16P13.3) WILD-TYPE" "DEL PEAK 33(16P13.3) WILD-TYPE" 
                    TCGA-BR-7197                     TCGA-BR-7703 
  "DEL PEAK 33(16P13.3) MUTATED" "DEL PEAK 33(16P13.3) WILD-TYPE" 
                    TCGA-BR-7704                     TCGA-BR-7707 
"DEL PEAK 33(16P13.3) WILD-TYPE" "DEL PEAK 33(16P13.3) WILD-TYPE" 
                    TCGA-BR-7715                     TCGA-BR-7716 
  "DEL PEAK 33(16P13.3) MUTATED"   "DEL PEAK 33(16P13.3) MUTATED" 
                    TCGA-BR-7717                     TCGA-BR-7722 
"DEL PEAK 33(16P13.3) WILD-TYPE" "DEL PEAK 33(16P13.3) WILD-TYPE" 
                    TCGA-BR-7723                     TCGA-BR-7851 
"DEL PEAK 33(16P13.3) WILD-TYPE" "DEL PEAK 33(16P13.3) WILD-TYPE" 
                    TCGA-BR-7901                     TCGA-BR-7957 
  "DEL PEAK 33(16P13.3) MUTATED" "DEL PEAK 33(16P13.3) WILD-TYPE" 
                    TCGA-BR-7958                     TCGA-BR-7959 
"DEL PEAK 33(16P13.3) WILD-TYPE" "DEL PEAK 33(16P13.3) WILD-TYPE" 
                    TCGA-BR-8059                     TCGA-BR-8060 
"DEL PEAK 33(16P13.3) WILD-TYPE" "DEL PEAK 33(16P13.3) WILD-TYPE" 
                    TCGA-BR-8077                     TCGA-BR-8078 
"DEL PEAK 33(16P13.3) WILD-TYPE" "DEL PEAK 33(16P13.3) WILD-TYPE" 
                    TCGA-BR-8080                     TCGA-BR-8081 
"DEL PEAK 33(16P13.3) WILD-TYPE" "DEL PEAK 33(16P13.3) WILD-TYPE" 
                    TCGA-BR-8284                     TCGA-BR-8285 
"DEL PEAK 33(16P13.3) WILD-TYPE" "DEL PEAK 33(16P13.3) WILD-TYPE" 
                    TCGA-BR-8286                     TCGA-BR-8289 
"DEL PEAK 33(16P13.3) WILD-TYPE" "DEL PEAK 33(16P13.3) WILD-TYPE" 
                    TCGA-BR-8291                     TCGA-BR-8295 
"DEL PEAK 33(16P13.3) WILD-TYPE" "DEL PEAK 33(16P13.3) WILD-TYPE" 
                    TCGA-BR-8296                     TCGA-BR-8297 
"DEL PEAK 33(16P13.3) WILD-TYPE" "DEL PEAK 33(16P13.3) WILD-TYPE" 
                    TCGA-CD-5798                     TCGA-CD-5799 
"DEL PEAK 33(16P13.3) WILD-TYPE" "DEL PEAK 33(16P13.3) WILD-TYPE" 
                    TCGA-CD-5800                     TCGA-CD-5801 
"DEL PEAK 33(16P13.3) WILD-TYPE" "DEL PEAK 33(16P13.3) WILD-TYPE" 
                    TCGA-CD-5802                     TCGA-CD-5803 
"DEL PEAK 33(16P13.3) WILD-TYPE"   "DEL PEAK 33(16P13.3) MUTATED" 
                    TCGA-CG-4300                     TCGA-CG-4301 
"DEL PEAK 33(16P13.3) WILD-TYPE" "DEL PEAK 33(16P13.3) WILD-TYPE" 
                    TCGA-CG-4304                     TCGA-CG-4305 
"DEL PEAK 33(16P13.3) WILD-TYPE" "DEL PEAK 33(16P13.3) WILD-TYPE" 
                    TCGA-CG-4306                     TCGA-CG-4436 
"DEL PEAK 33(16P13.3) WILD-TYPE" "DEL PEAK 33(16P13.3) WILD-TYPE" 
                    TCGA-CG-4437                     TCGA-CG-4438 
"DEL PEAK 33(16P13.3) WILD-TYPE" "DEL PEAK 33(16P13.3) WILD-TYPE" 
                    TCGA-CG-4440                     TCGA-CG-4441 
"DEL PEAK 33(16P13.3) WILD-TYPE" "DEL PEAK 33(16P13.3) WILD-TYPE" 
                    TCGA-CG-4443                     TCGA-CG-4444 
"DEL PEAK 33(16P13.3) WILD-TYPE" "DEL PEAK 33(16P13.3) WILD-TYPE" 
                    TCGA-CG-4449                     TCGA-CG-4455 
  "DEL PEAK 33(16P13.3) MUTATED"   "DEL PEAK 33(16P13.3) MUTATED" 
                    TCGA-CG-4460                     TCGA-CG-4462 
"DEL PEAK 33(16P13.3) WILD-TYPE" "DEL PEAK 33(16P13.3) WILD-TYPE" 
                    TCGA-CG-4465                     TCGA-CG-4466 
"DEL PEAK 33(16P13.3) WILD-TYPE" "DEL PEAK 33(16P13.3) WILD-TYPE" 
                    TCGA-CG-4469                     TCGA-CG-4472 
"DEL PEAK 33(16P13.3) WILD-TYPE" "DEL PEAK 33(16P13.3) WILD-TYPE" 
                    TCGA-CG-4474                     TCGA-CG-4477 
"DEL PEAK 33(16P13.3) WILD-TYPE" "DEL PEAK 33(16P13.3) WILD-TYPE" 
                    TCGA-CG-5716                     TCGA-CG-5717 
"DEL PEAK 33(16P13.3) WILD-TYPE" "DEL PEAK 33(16P13.3) WILD-TYPE" 
                    TCGA-CG-5718                     TCGA-CG-5719 
"DEL PEAK 33(16P13.3) WILD-TYPE" "DEL PEAK 33(16P13.3) WILD-TYPE" 
                    TCGA-CG-5720                     TCGA-CG-5721 
"DEL PEAK 33(16P13.3) WILD-TYPE" "DEL PEAK 33(16P13.3) WILD-TYPE" 
                    TCGA-CG-5722                     TCGA-CG-5723 
"DEL PEAK 33(16P13.3) WILD-TYPE" "DEL PEAK 33(16P13.3) WILD-TYPE" 
                    TCGA-CG-5724                     TCGA-CG-5725 
  "DEL PEAK 33(16P13.3) MUTATED" "DEL PEAK 33(16P13.3) WILD-TYPE" 
                    TCGA-CG-5726                     TCGA-CG-5727 
"DEL PEAK 33(16P13.3) WILD-TYPE" "DEL PEAK 33(16P13.3) WILD-TYPE" 
                    TCGA-CG-5728                     TCGA-CG-5730 
"DEL PEAK 33(16P13.3) WILD-TYPE" "DEL PEAK 33(16P13.3) WILD-TYPE" 
                    TCGA-CG-5732                     TCGA-CG-5733 
"DEL PEAK 33(16P13.3) WILD-TYPE" "DEL PEAK 33(16P13.3) WILD-TYPE" 
                    TCGA-CG-5734                     TCGA-D7-5577 
"DEL PEAK 33(16P13.3) WILD-TYPE" "DEL PEAK 33(16P13.3) WILD-TYPE" 
                    TCGA-D7-5578                     TCGA-D7-5579 
"DEL PEAK 33(16P13.3) WILD-TYPE"   "DEL PEAK 33(16P13.3) MUTATED" 
                    TCGA-D7-6518                     TCGA-D7-6519 
"DEL PEAK 33(16P13.3) WILD-TYPE" "DEL PEAK 33(16P13.3) WILD-TYPE" 
                    TCGA-D7-6520                     TCGA-D7-6521 
"DEL PEAK 33(16P13.3) WILD-TYPE" "DEL PEAK 33(16P13.3) WILD-TYPE" 
                    TCGA-D7-6522                     TCGA-D7-6524 
"DEL PEAK 33(16P13.3) WILD-TYPE" "DEL PEAK 33(16P13.3) WILD-TYPE" 
                    TCGA-D7-6525                     TCGA-D7-6526 
"DEL PEAK 33(16P13.3) WILD-TYPE" "DEL PEAK 33(16P13.3) WILD-TYPE" 
                    TCGA-D7-6527                     TCGA-D7-6528 
"DEL PEAK 33(16P13.3) WILD-TYPE"   "DEL PEAK 33(16P13.3) MUTATED" 
                    TCGA-D7-6815                     TCGA-D7-6817 
"DEL PEAK 33(16P13.3) WILD-TYPE" "DEL PEAK 33(16P13.3) WILD-TYPE" 
                    TCGA-D7-6818                     TCGA-D7-6820 
"DEL PEAK 33(16P13.3) WILD-TYPE" "DEL PEAK 33(16P13.3) WILD-TYPE" 
                    TCGA-D7-6822                     TCGA-EQ-5647 
  "DEL PEAK 33(16P13.3) MUTATED" "DEL PEAK 33(16P13.3) WILD-TYPE" 
                    TCGA-EQ-8122                     TCGA-F1-6177 
"DEL PEAK 33(16P13.3) WILD-TYPE" "DEL PEAK 33(16P13.3) WILD-TYPE" 
                    TCGA-F1-6874                     TCGA-F1-6875 
"DEL PEAK 33(16P13.3) WILD-TYPE"   "DEL PEAK 33(16P13.3) MUTATED" 
                    TCGA-FP-7735                     TCGA-FP-7829 
"DEL PEAK 33(16P13.3) WILD-TYPE" "DEL PEAK 33(16P13.3) WILD-TYPE" 
                    TCGA-FP-7916                     TCGA-FP-7998 
"DEL PEAK 33(16P13.3) WILD-TYPE" "DEL PEAK 33(16P13.3) WILD-TYPE" 
                    TCGA-HJ-7597                     TCGA-IN-7806 
"DEL PEAK 33(16P13.3) WILD-TYPE" "DEL PEAK 33(16P13.3) WILD-TYPE" 
                    TCGA-IN-7808                     TCGA-IP-7968 
"DEL PEAK 33(16P13.3) WILD-TYPE" "DEL PEAK 33(16P13.3) WILD-TYPE" 
[1] "hr=" "1.7"
D59V2, continuous
D59V3, binary
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  DEL PEAK 33(16P13.3) MUTATED      6   14
  DEL PEAK 33(16P13.3) WILD-TYPE   59   82
        clus
vv       DEL PEAK 33(16P13.3) MUTATED DEL PEAK 33(16P13.3) WILD-TYPE
  FEMALE                            6                             59
  MALE                             14                             82
D59V4, multiclass
D59V5, multiclass
    clus
vv   DEL PEAK 33(16P13.3) MUTATED DEL PEAK 33(16P13.3) WILD-TYPE
  T1                            0                              6
  T2                            7                             46
  T3                            9                             50
  T4                            1                             32
D59V6, multiclass
    clus
vv   DEL PEAK 33(16P13.3) MUTATED DEL PEAK 33(16P13.3) WILD-TYPE
  N0                            6                             44
  N1                            8                             49
  N2                            1                             23
  N3                            2                             17
D59V7, multiclass
    clus
vv   DEL PEAK 33(16P13.3) MUTATED DEL PEAK 33(16P13.3) WILD-TYPE
  M0                           19                            113
  M1                            1                             17
  MX                            0                             11
D59V8, multiclass
     clus
vv    DEL PEAK 33(16P13.3) MUTATED DEL PEAK 33(16P13.3) WILD-TYPE
  I                              3                             22
  II                             6                             37
  III                            4                             44
  IV                             3                             26
D59V9, binary
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  DEL PEAK 33(16P13.3) MUTATED     19    1
  DEL PEAK 33(16P13.3) WILD-TYPE  137    4
     clus
vv    DEL PEAK 33(16P13.3) MUTATED DEL PEAK 33(16P13.3) WILD-TYPE
  NO                             1                              4
  YES                           19                            137

Clustering(60) Variable = Del Peak 34(16q23.1) mutation analysis
D60V1, survival
                    TCGA-B7-5816                     TCGA-B7-5818 
  "DEL PEAK 34(16Q23.1) MUTATED"   "DEL PEAK 34(16Q23.1) MUTATED" 
                    TCGA-BR-6452                     TCGA-BR-6455 
"DEL PEAK 34(16Q23.1) WILD-TYPE" "DEL PEAK 34(16Q23.1) WILD-TYPE" 
                    TCGA-BR-6457                     TCGA-BR-6458 
"DEL PEAK 34(16Q23.1) WILD-TYPE"   "DEL PEAK 34(16Q23.1) MUTATED" 
                    TCGA-BR-6563                     TCGA-BR-6564 
"DEL PEAK 34(16Q23.1) WILD-TYPE"   "DEL PEAK 34(16Q23.1) MUTATED" 
                    TCGA-BR-6565                     TCGA-BR-6566 
"DEL PEAK 34(16Q23.1) WILD-TYPE" "DEL PEAK 34(16Q23.1) WILD-TYPE" 
                    TCGA-BR-6705                     TCGA-BR-6706 
"DEL PEAK 34(16Q23.1) WILD-TYPE"   "DEL PEAK 34(16Q23.1) MUTATED" 
                    TCGA-BR-6707                     TCGA-BR-6709 
"DEL PEAK 34(16Q23.1) WILD-TYPE" "DEL PEAK 34(16Q23.1) WILD-TYPE" 
                    TCGA-BR-6710                     TCGA-BR-6801 
"DEL PEAK 34(16Q23.1) WILD-TYPE" "DEL PEAK 34(16Q23.1) WILD-TYPE" 
                    TCGA-BR-6802                     TCGA-BR-6803 
"DEL PEAK 34(16Q23.1) WILD-TYPE" "DEL PEAK 34(16Q23.1) WILD-TYPE" 
                    TCGA-BR-6852                     TCGA-BR-7196 
"DEL PEAK 34(16Q23.1) WILD-TYPE" "DEL PEAK 34(16Q23.1) WILD-TYPE" 
                    TCGA-BR-7197                     TCGA-BR-7703 
"DEL PEAK 34(16Q23.1) WILD-TYPE"   "DEL PEAK 34(16Q23.1) MUTATED" 
                    TCGA-BR-7704                     TCGA-BR-7707 
"DEL PEAK 34(16Q23.1) WILD-TYPE" "DEL PEAK 34(16Q23.1) WILD-TYPE" 
                    TCGA-BR-7715                     TCGA-BR-7716 
  "DEL PEAK 34(16Q23.1) MUTATED" "DEL PEAK 34(16Q23.1) WILD-TYPE" 
                    TCGA-BR-7717                     TCGA-BR-7722 
  "DEL PEAK 34(16Q23.1) MUTATED" "DEL PEAK 34(16Q23.1) WILD-TYPE" 
                    TCGA-BR-7723                     TCGA-BR-7851 
  "DEL PEAK 34(16Q23.1) MUTATED" "DEL PEAK 34(16Q23.1) WILD-TYPE" 
                    TCGA-BR-7901                     TCGA-BR-7957 
  "DEL PEAK 34(16Q23.1) MUTATED" "DEL PEAK 34(16Q23.1) WILD-TYPE" 
                    TCGA-BR-7958                     TCGA-BR-7959 
"DEL PEAK 34(16Q23.1) WILD-TYPE" "DEL PEAK 34(16Q23.1) WILD-TYPE" 
                    TCGA-BR-8059                     TCGA-BR-8060 
"DEL PEAK 34(16Q23.1) WILD-TYPE" "DEL PEAK 34(16Q23.1) WILD-TYPE" 
                    TCGA-BR-8077                     TCGA-BR-8078 
"DEL PEAK 34(16Q23.1) WILD-TYPE" "DEL PEAK 34(16Q23.1) WILD-TYPE" 
                    TCGA-BR-8080                     TCGA-BR-8081 
"DEL PEAK 34(16Q23.1) WILD-TYPE" "DEL PEAK 34(16Q23.1) WILD-TYPE" 
                    TCGA-BR-8284                     TCGA-BR-8285 
"DEL PEAK 34(16Q23.1) WILD-TYPE" "DEL PEAK 34(16Q23.1) WILD-TYPE" 
                    TCGA-BR-8286                     TCGA-BR-8289 
"DEL PEAK 34(16Q23.1) WILD-TYPE" "DEL PEAK 34(16Q23.1) WILD-TYPE" 
                    TCGA-BR-8291                     TCGA-BR-8295 
"DEL PEAK 34(16Q23.1) WILD-TYPE" "DEL PEAK 34(16Q23.1) WILD-TYPE" 
                    TCGA-BR-8296                     TCGA-BR-8297 
"DEL PEAK 34(16Q23.1) WILD-TYPE" "DEL PEAK 34(16Q23.1) WILD-TYPE" 
                    TCGA-CD-5798                     TCGA-CD-5799 
"DEL PEAK 34(16Q23.1) WILD-TYPE" "DEL PEAK 34(16Q23.1) WILD-TYPE" 
                    TCGA-CD-5800                     TCGA-CD-5801 
  "DEL PEAK 34(16Q23.1) MUTATED" "DEL PEAK 34(16Q23.1) WILD-TYPE" 
                    TCGA-CD-5802                     TCGA-CD-5803 
  "DEL PEAK 34(16Q23.1) MUTATED"   "DEL PEAK 34(16Q23.1) MUTATED" 
                    TCGA-CG-4300                     TCGA-CG-4301 
"DEL PEAK 34(16Q23.1) WILD-TYPE" "DEL PEAK 34(16Q23.1) WILD-TYPE" 
                    TCGA-CG-4304                     TCGA-CG-4305 
"DEL PEAK 34(16Q23.1) WILD-TYPE"   "DEL PEAK 34(16Q23.1) MUTATED" 
                    TCGA-CG-4306                     TCGA-CG-4436 
"DEL PEAK 34(16Q23.1) WILD-TYPE"   "DEL PEAK 34(16Q23.1) MUTATED" 
                    TCGA-CG-4437                     TCGA-CG-4438 
  "DEL PEAK 34(16Q23.1) MUTATED"   "DEL PEAK 34(16Q23.1) MUTATED" 
                    TCGA-CG-4440                     TCGA-CG-4441 
"DEL PEAK 34(16Q23.1) WILD-TYPE" "DEL PEAK 34(16Q23.1) WILD-TYPE" 
                    TCGA-CG-4443                     TCGA-CG-4444 
"DEL PEAK 34(16Q23.1) WILD-TYPE"   "DEL PEAK 34(16Q23.1) MUTATED" 
                    TCGA-CG-4449                     TCGA-CG-4455 
  "DEL PEAK 34(16Q23.1) MUTATED"   "DEL PEAK 34(16Q23.1) MUTATED" 
                    TCGA-CG-4460                     TCGA-CG-4462 
"DEL PEAK 34(16Q23.1) WILD-TYPE" "DEL PEAK 34(16Q23.1) WILD-TYPE" 
                    TCGA-CG-4465                     TCGA-CG-4466 
"DEL PEAK 34(16Q23.1) WILD-TYPE" "DEL PEAK 34(16Q23.1) WILD-TYPE" 
                    TCGA-CG-4469                     TCGA-CG-4472 
  "DEL PEAK 34(16Q23.1) MUTATED" "DEL PEAK 34(16Q23.1) WILD-TYPE" 
                    TCGA-CG-4474                     TCGA-CG-4477 
"DEL PEAK 34(16Q23.1) WILD-TYPE"   "DEL PEAK 34(16Q23.1) MUTATED" 
                    TCGA-CG-5716                     TCGA-CG-5717 
"DEL PEAK 34(16Q23.1) WILD-TYPE" "DEL PEAK 34(16Q23.1) WILD-TYPE" 
                    TCGA-CG-5718                     TCGA-CG-5719 
"DEL PEAK 34(16Q23.1) WILD-TYPE" "DEL PEAK 34(16Q23.1) WILD-TYPE" 
                    TCGA-CG-5720                     TCGA-CG-5721 
"DEL PEAK 34(16Q23.1) WILD-TYPE" "DEL PEAK 34(16Q23.1) WILD-TYPE" 
                    TCGA-CG-5722                     TCGA-CG-5723 
"DEL PEAK 34(16Q23.1) WILD-TYPE"   "DEL PEAK 34(16Q23.1) MUTATED" 
                    TCGA-CG-5724                     TCGA-CG-5725 
  "DEL PEAK 34(16Q23.1) MUTATED"   "DEL PEAK 34(16Q23.1) MUTATED" 
                    TCGA-CG-5726                     TCGA-CG-5727 
"DEL PEAK 34(16Q23.1) WILD-TYPE"   "DEL PEAK 34(16Q23.1) MUTATED" 
                    TCGA-CG-5728                     TCGA-CG-5730 
"DEL PEAK 34(16Q23.1) WILD-TYPE" "DEL PEAK 34(16Q23.1) WILD-TYPE" 
                    TCGA-CG-5732                     TCGA-CG-5733 
"DEL PEAK 34(16Q23.1) WILD-TYPE" "DEL PEAK 34(16Q23.1) WILD-TYPE" 
                    TCGA-CG-5734                     TCGA-D7-5577 
"DEL PEAK 34(16Q23.1) WILD-TYPE"   "DEL PEAK 34(16Q23.1) MUTATED" 
                    TCGA-D7-5578                     TCGA-D7-5579 
  "DEL PEAK 34(16Q23.1) MUTATED"   "DEL PEAK 34(16Q23.1) MUTATED" 
                    TCGA-D7-6518                     TCGA-D7-6519 
"DEL PEAK 34(16Q23.1) WILD-TYPE" "DEL PEAK 34(16Q23.1) WILD-TYPE" 
                    TCGA-D7-6520                     TCGA-D7-6521 
"DEL PEAK 34(16Q23.1) WILD-TYPE" "DEL PEAK 34(16Q23.1) WILD-TYPE" 
                    TCGA-D7-6522                     TCGA-D7-6524 
"DEL PEAK 34(16Q23.1) WILD-TYPE" "DEL PEAK 34(16Q23.1) WILD-TYPE" 
                    TCGA-D7-6525                     TCGA-D7-6526 
  "DEL PEAK 34(16Q23.1) MUTATED"   "DEL PEAK 34(16Q23.1) MUTATED" 
                    TCGA-D7-6527                     TCGA-D7-6528 
"DEL PEAK 34(16Q23.1) WILD-TYPE"   "DEL PEAK 34(16Q23.1) MUTATED" 
                    TCGA-D7-6815                     TCGA-D7-6817 
"DEL PEAK 34(16Q23.1) WILD-TYPE"   "DEL PEAK 34(16Q23.1) MUTATED" 
                    TCGA-D7-6818                     TCGA-D7-6820 
  "DEL PEAK 34(16Q23.1) MUTATED" "DEL PEAK 34(16Q23.1) WILD-TYPE" 
                    TCGA-D7-6822                     TCGA-EQ-5647 
"DEL PEAK 34(16Q23.1) WILD-TYPE" "DEL PEAK 34(16Q23.1) WILD-TYPE" 
                    TCGA-EQ-8122                     TCGA-F1-6177 
  "DEL PEAK 34(16Q23.1) MUTATED" "DEL PEAK 34(16Q23.1) WILD-TYPE" 
                    TCGA-F1-6874                     TCGA-F1-6875 
"DEL PEAK 34(16Q23.1) WILD-TYPE"   "DEL PEAK 34(16Q23.1) MUTATED" 
                    TCGA-FP-7735                     TCGA-FP-7829 
"DEL PEAK 34(16Q23.1) WILD-TYPE" "DEL PEAK 34(16Q23.1) WILD-TYPE" 
                    TCGA-FP-7916                     TCGA-FP-7998 
  "DEL PEAK 34(16Q23.1) MUTATED"   "DEL PEAK 34(16Q23.1) MUTATED" 
                    TCGA-HJ-7597                     TCGA-IN-7806 
"DEL PEAK 34(16Q23.1) WILD-TYPE" "DEL PEAK 34(16Q23.1) WILD-TYPE" 
                    TCGA-IN-7808                     TCGA-IP-7968 
  "DEL PEAK 34(16Q23.1) MUTATED" "DEL PEAK 34(16Q23.1) WILD-TYPE" 
                    TCGA-B7-5816                     TCGA-B7-5818 
  "DEL PEAK 34(16Q23.1) MUTATED"   "DEL PEAK 34(16Q23.1) MUTATED" 
                    TCGA-BR-6452                     TCGA-BR-6455 
"DEL PEAK 34(16Q23.1) WILD-TYPE" "DEL PEAK 34(16Q23.1) WILD-TYPE" 
                    TCGA-BR-6457                     TCGA-BR-6458 
"DEL PEAK 34(16Q23.1) WILD-TYPE"   "DEL PEAK 34(16Q23.1) MUTATED" 
                    TCGA-BR-6563                     TCGA-BR-6564 
"DEL PEAK 34(16Q23.1) WILD-TYPE"   "DEL PEAK 34(16Q23.1) MUTATED" 
                    TCGA-BR-6565                     TCGA-BR-6566 
"DEL PEAK 34(16Q23.1) WILD-TYPE" "DEL PEAK 34(16Q23.1) WILD-TYPE" 
                    TCGA-BR-6705                     TCGA-BR-6706 
"DEL PEAK 34(16Q23.1) WILD-TYPE"   "DEL PEAK 34(16Q23.1) MUTATED" 
                    TCGA-BR-6707                     TCGA-BR-6709 
"DEL PEAK 34(16Q23.1) WILD-TYPE" "DEL PEAK 34(16Q23.1) WILD-TYPE" 
                    TCGA-BR-6710                     TCGA-BR-6801 
"DEL PEAK 34(16Q23.1) WILD-TYPE" "DEL PEAK 34(16Q23.1) WILD-TYPE" 
                    TCGA-BR-6802                     TCGA-BR-6803 
"DEL PEAK 34(16Q23.1) WILD-TYPE" "DEL PEAK 34(16Q23.1) WILD-TYPE" 
                    TCGA-BR-6852                     TCGA-BR-7196 
"DEL PEAK 34(16Q23.1) WILD-TYPE" "DEL PEAK 34(16Q23.1) WILD-TYPE" 
                    TCGA-BR-7197                     TCGA-BR-7703 
"DEL PEAK 34(16Q23.1) WILD-TYPE"   "DEL PEAK 34(16Q23.1) MUTATED" 
                    TCGA-BR-7704                     TCGA-BR-7707 
"DEL PEAK 34(16Q23.1) WILD-TYPE" "DEL PEAK 34(16Q23.1) WILD-TYPE" 
                    TCGA-BR-7715                     TCGA-BR-7716 
  "DEL PEAK 34(16Q23.1) MUTATED" "DEL PEAK 34(16Q23.1) WILD-TYPE" 
                    TCGA-BR-7717                     TCGA-BR-7722 
  "DEL PEAK 34(16Q23.1) MUTATED" "DEL PEAK 34(16Q23.1) WILD-TYPE" 
                    TCGA-BR-7723                     TCGA-BR-7851 
  "DEL PEAK 34(16Q23.1) MUTATED" "DEL PEAK 34(16Q23.1) WILD-TYPE" 
                    TCGA-BR-7901                     TCGA-BR-7957 
  "DEL PEAK 34(16Q23.1) MUTATED" "DEL PEAK 34(16Q23.1) WILD-TYPE" 
                    TCGA-BR-7958                     TCGA-BR-7959 
"DEL PEAK 34(16Q23.1) WILD-TYPE" "DEL PEAK 34(16Q23.1) WILD-TYPE" 
                    TCGA-BR-8059                     TCGA-BR-8060 
"DEL PEAK 34(16Q23.1) WILD-TYPE" "DEL PEAK 34(16Q23.1) WILD-TYPE" 
                    TCGA-BR-8077                     TCGA-BR-8078 
"DEL PEAK 34(16Q23.1) WILD-TYPE" "DEL PEAK 34(16Q23.1) WILD-TYPE" 
                    TCGA-BR-8080                     TCGA-BR-8081 
"DEL PEAK 34(16Q23.1) WILD-TYPE" "DEL PEAK 34(16Q23.1) WILD-TYPE" 
                    TCGA-BR-8284                     TCGA-BR-8285 
"DEL PEAK 34(16Q23.1) WILD-TYPE" "DEL PEAK 34(16Q23.1) WILD-TYPE" 
                    TCGA-BR-8286                     TCGA-BR-8289 
"DEL PEAK 34(16Q23.1) WILD-TYPE" "DEL PEAK 34(16Q23.1) WILD-TYPE" 
                    TCGA-BR-8291                     TCGA-BR-8295 
"DEL PEAK 34(16Q23.1) WILD-TYPE" "DEL PEAK 34(16Q23.1) WILD-TYPE" 
                    TCGA-BR-8296                     TCGA-BR-8297 
"DEL PEAK 34(16Q23.1) WILD-TYPE" "DEL PEAK 34(16Q23.1) WILD-TYPE" 
                    TCGA-CD-5798                     TCGA-CD-5799 
"DEL PEAK 34(16Q23.1) WILD-TYPE" "DEL PEAK 34(16Q23.1) WILD-TYPE" 
                    TCGA-CD-5800                     TCGA-CD-5801 
  "DEL PEAK 34(16Q23.1) MUTATED" "DEL PEAK 34(16Q23.1) WILD-TYPE" 
                    TCGA-CD-5802                     TCGA-CD-5803 
  "DEL PEAK 34(16Q23.1) MUTATED"   "DEL PEAK 34(16Q23.1) MUTATED" 
                    TCGA-CG-4300                     TCGA-CG-4301 
"DEL PEAK 34(16Q23.1) WILD-TYPE" "DEL PEAK 34(16Q23.1) WILD-TYPE" 
                    TCGA-CG-4304                     TCGA-CG-4305 
"DEL PEAK 34(16Q23.1) WILD-TYPE"   "DEL PEAK 34(16Q23.1) MUTATED" 
                    TCGA-CG-4306                     TCGA-CG-4436 
"DEL PEAK 34(16Q23.1) WILD-TYPE"   "DEL PEAK 34(16Q23.1) MUTATED" 
                    TCGA-CG-4437                     TCGA-CG-4438 
  "DEL PEAK 34(16Q23.1) MUTATED"   "DEL PEAK 34(16Q23.1) MUTATED" 
                    TCGA-CG-4440                     TCGA-CG-4441 
"DEL PEAK 34(16Q23.1) WILD-TYPE" "DEL PEAK 34(16Q23.1) WILD-TYPE" 
                    TCGA-CG-4443                     TCGA-CG-4444 
"DEL PEAK 34(16Q23.1) WILD-TYPE"   "DEL PEAK 34(16Q23.1) MUTATED" 
                    TCGA-CG-4449                     TCGA-CG-4455 
  "DEL PEAK 34(16Q23.1) MUTATED"   "DEL PEAK 34(16Q23.1) MUTATED" 
                    TCGA-CG-4460                     TCGA-CG-4462 
"DEL PEAK 34(16Q23.1) WILD-TYPE" "DEL PEAK 34(16Q23.1) WILD-TYPE" 
                    TCGA-CG-4465                     TCGA-CG-4466 
"DEL PEAK 34(16Q23.1) WILD-TYPE" "DEL PEAK 34(16Q23.1) WILD-TYPE" 
                    TCGA-CG-4469                     TCGA-CG-4472 
  "DEL PEAK 34(16Q23.1) MUTATED" "DEL PEAK 34(16Q23.1) WILD-TYPE" 
                    TCGA-CG-4474                     TCGA-CG-4477 
"DEL PEAK 34(16Q23.1) WILD-TYPE"   "DEL PEAK 34(16Q23.1) MUTATED" 
                    TCGA-CG-5716                     TCGA-CG-5717 
"DEL PEAK 34(16Q23.1) WILD-TYPE" "DEL PEAK 34(16Q23.1) WILD-TYPE" 
                    TCGA-CG-5718                     TCGA-CG-5719 
"DEL PEAK 34(16Q23.1) WILD-TYPE" "DEL PEAK 34(16Q23.1) WILD-TYPE" 
                    TCGA-CG-5720                     TCGA-CG-5721 
"DEL PEAK 34(16Q23.1) WILD-TYPE" "DEL PEAK 34(16Q23.1) WILD-TYPE" 
                    TCGA-CG-5722                     TCGA-CG-5723 
"DEL PEAK 34(16Q23.1) WILD-TYPE"   "DEL PEAK 34(16Q23.1) MUTATED" 
                    TCGA-CG-5724                     TCGA-CG-5725 
  "DEL PEAK 34(16Q23.1) MUTATED"   "DEL PEAK 34(16Q23.1) MUTATED" 
                    TCGA-CG-5726                     TCGA-CG-5727 
"DEL PEAK 34(16Q23.1) WILD-TYPE"   "DEL PEAK 34(16Q23.1) MUTATED" 
                    TCGA-CG-5728                     TCGA-CG-5730 
"DEL PEAK 34(16Q23.1) WILD-TYPE" "DEL PEAK 34(16Q23.1) WILD-TYPE" 
                    TCGA-CG-5732                     TCGA-CG-5733 
"DEL PEAK 34(16Q23.1) WILD-TYPE" "DEL PEAK 34(16Q23.1) WILD-TYPE" 
                    TCGA-CG-5734                     TCGA-D7-5577 
"DEL PEAK 34(16Q23.1) WILD-TYPE"   "DEL PEAK 34(16Q23.1) MUTATED" 
                    TCGA-D7-5578                     TCGA-D7-5579 
  "DEL PEAK 34(16Q23.1) MUTATED"   "DEL PEAK 34(16Q23.1) MUTATED" 
                    TCGA-D7-6518                     TCGA-D7-6519 
"DEL PEAK 34(16Q23.1) WILD-TYPE" "DEL PEAK 34(16Q23.1) WILD-TYPE" 
                    TCGA-D7-6520                     TCGA-D7-6521 
"DEL PEAK 34(16Q23.1) WILD-TYPE" "DEL PEAK 34(16Q23.1) WILD-TYPE" 
                    TCGA-D7-6522                     TCGA-D7-6524 
"DEL PEAK 34(16Q23.1) WILD-TYPE" "DEL PEAK 34(16Q23.1) WILD-TYPE" 
                    TCGA-D7-6525                     TCGA-D7-6526 
  "DEL PEAK 34(16Q23.1) MUTATED"   "DEL PEAK 34(16Q23.1) MUTATED" 
                    TCGA-D7-6527                     TCGA-D7-6528 
"DEL PEAK 34(16Q23.1) WILD-TYPE"   "DEL PEAK 34(16Q23.1) MUTATED" 
                    TCGA-D7-6815                     TCGA-D7-6817 
"DEL PEAK 34(16Q23.1) WILD-TYPE"   "DEL PEAK 34(16Q23.1) MUTATED" 
                    TCGA-D7-6818                     TCGA-D7-6820 
  "DEL PEAK 34(16Q23.1) MUTATED" "DEL PEAK 34(16Q23.1) WILD-TYPE" 
                    TCGA-D7-6822                     TCGA-EQ-5647 
"DEL PEAK 34(16Q23.1) WILD-TYPE" "DEL PEAK 34(16Q23.1) WILD-TYPE" 
                    TCGA-EQ-8122                     TCGA-F1-6177 
  "DEL PEAK 34(16Q23.1) MUTATED" "DEL PEAK 34(16Q23.1) WILD-TYPE" 
                    TCGA-F1-6874                     TCGA-F1-6875 
"DEL PEAK 34(16Q23.1) WILD-TYPE"   "DEL PEAK 34(16Q23.1) MUTATED" 
                    TCGA-FP-7735                     TCGA-FP-7829 
"DEL PEAK 34(16Q23.1) WILD-TYPE" "DEL PEAK 34(16Q23.1) WILD-TYPE" 
                    TCGA-FP-7916                     TCGA-FP-7998 
  "DEL PEAK 34(16Q23.1) MUTATED"   "DEL PEAK 34(16Q23.1) MUTATED" 
                    TCGA-HJ-7597                     TCGA-IN-7806 
"DEL PEAK 34(16Q23.1) WILD-TYPE" "DEL PEAK 34(16Q23.1) WILD-TYPE" 
                    TCGA-IN-7808                     TCGA-IP-7968 
  "DEL PEAK 34(16Q23.1) MUTATED" "DEL PEAK 34(16Q23.1) WILD-TYPE" 
                    TCGA-B7-5816                     TCGA-B7-5818 
  "DEL PEAK 34(16Q23.1) MUTATED"   "DEL PEAK 34(16Q23.1) MUTATED" 
                    TCGA-BR-6452                     TCGA-BR-6455 
"DEL PEAK 34(16Q23.1) WILD-TYPE" "DEL PEAK 34(16Q23.1) WILD-TYPE" 
                    TCGA-BR-6457                     TCGA-BR-6458 
"DEL PEAK 34(16Q23.1) WILD-TYPE"   "DEL PEAK 34(16Q23.1) MUTATED" 
                    TCGA-BR-6563                     TCGA-BR-6564 
"DEL PEAK 34(16Q23.1) WILD-TYPE"   "DEL PEAK 34(16Q23.1) MUTATED" 
                    TCGA-BR-6565                     TCGA-BR-6566 
"DEL PEAK 34(16Q23.1) WILD-TYPE" "DEL PEAK 34(16Q23.1) WILD-TYPE" 
                    TCGA-BR-6705                     TCGA-BR-6706 
"DEL PEAK 34(16Q23.1) WILD-TYPE"   "DEL PEAK 34(16Q23.1) MUTATED" 
                    TCGA-BR-6707                     TCGA-BR-6709 
"DEL PEAK 34(16Q23.1) WILD-TYPE" "DEL PEAK 34(16Q23.1) WILD-TYPE" 
                    TCGA-BR-6710                     TCGA-BR-6801 
"DEL PEAK 34(16Q23.1) WILD-TYPE" "DEL PEAK 34(16Q23.1) WILD-TYPE" 
                    TCGA-BR-6802                     TCGA-BR-6803 
"DEL PEAK 34(16Q23.1) WILD-TYPE" "DEL PEAK 34(16Q23.1) WILD-TYPE" 
                    TCGA-BR-6852                     TCGA-BR-7196 
"DEL PEAK 34(16Q23.1) WILD-TYPE" "DEL PEAK 34(16Q23.1) WILD-TYPE" 
                    TCGA-BR-7197                     TCGA-BR-7703 
"DEL PEAK 34(16Q23.1) WILD-TYPE"   "DEL PEAK 34(16Q23.1) MUTATED" 
                    TCGA-BR-7704                     TCGA-BR-7707 
"DEL PEAK 34(16Q23.1) WILD-TYPE" "DEL PEAK 34(16Q23.1) WILD-TYPE" 
                    TCGA-BR-7715                     TCGA-BR-7716 
  "DEL PEAK 34(16Q23.1) MUTATED" "DEL PEAK 34(16Q23.1) WILD-TYPE" 
                    TCGA-BR-7717                     TCGA-BR-7722 
  "DEL PEAK 34(16Q23.1) MUTATED" "DEL PEAK 34(16Q23.1) WILD-TYPE" 
                    TCGA-BR-7723                     TCGA-BR-7851 
  "DEL PEAK 34(16Q23.1) MUTATED" "DEL PEAK 34(16Q23.1) WILD-TYPE" 
                    TCGA-BR-7901                     TCGA-BR-7957 
  "DEL PEAK 34(16Q23.1) MUTATED" "DEL PEAK 34(16Q23.1) WILD-TYPE" 
                    TCGA-BR-7958                     TCGA-BR-7959 
"DEL PEAK 34(16Q23.1) WILD-TYPE" "DEL PEAK 34(16Q23.1) WILD-TYPE" 
                    TCGA-BR-8059                     TCGA-BR-8060 
"DEL PEAK 34(16Q23.1) WILD-TYPE" "DEL PEAK 34(16Q23.1) WILD-TYPE" 
                    TCGA-BR-8077                     TCGA-BR-8078 
"DEL PEAK 34(16Q23.1) WILD-TYPE" "DEL PEAK 34(16Q23.1) WILD-TYPE" 
                    TCGA-BR-8080                     TCGA-BR-8081 
"DEL PEAK 34(16Q23.1) WILD-TYPE" "DEL PEAK 34(16Q23.1) WILD-TYPE" 
                    TCGA-BR-8284                     TCGA-BR-8285 
"DEL PEAK 34(16Q23.1) WILD-TYPE" "DEL PEAK 34(16Q23.1) WILD-TYPE" 
                    TCGA-BR-8286                     TCGA-BR-8289 
"DEL PEAK 34(16Q23.1) WILD-TYPE" "DEL PEAK 34(16Q23.1) WILD-TYPE" 
                    TCGA-BR-8291                     TCGA-BR-8295 
"DEL PEAK 34(16Q23.1) WILD-TYPE" "DEL PEAK 34(16Q23.1) WILD-TYPE" 
                    TCGA-BR-8296                     TCGA-BR-8297 
"DEL PEAK 34(16Q23.1) WILD-TYPE" "DEL PEAK 34(16Q23.1) WILD-TYPE" 
                    TCGA-CD-5798                     TCGA-CD-5799 
"DEL PEAK 34(16Q23.1) WILD-TYPE" "DEL PEAK 34(16Q23.1) WILD-TYPE" 
                    TCGA-CD-5800                     TCGA-CD-5801 
  "DEL PEAK 34(16Q23.1) MUTATED" "DEL PEAK 34(16Q23.1) WILD-TYPE" 
                    TCGA-CD-5802                     TCGA-CD-5803 
  "DEL PEAK 34(16Q23.1) MUTATED"   "DEL PEAK 34(16Q23.1) MUTATED" 
                    TCGA-CG-4300                     TCGA-CG-4301 
"DEL PEAK 34(16Q23.1) WILD-TYPE" "DEL PEAK 34(16Q23.1) WILD-TYPE" 
                    TCGA-CG-4304                     TCGA-CG-4305 
"DEL PEAK 34(16Q23.1) WILD-TYPE"   "DEL PEAK 34(16Q23.1) MUTATED" 
                    TCGA-CG-4306                     TCGA-CG-4436 
"DEL PEAK 34(16Q23.1) WILD-TYPE"   "DEL PEAK 34(16Q23.1) MUTATED" 
                    TCGA-CG-4437                     TCGA-CG-4438 
  "DEL PEAK 34(16Q23.1) MUTATED"   "DEL PEAK 34(16Q23.1) MUTATED" 
                    TCGA-CG-4440                     TCGA-CG-4441 
"DEL PEAK 34(16Q23.1) WILD-TYPE" "DEL PEAK 34(16Q23.1) WILD-TYPE" 
                    TCGA-CG-4443                     TCGA-CG-4444 
"DEL PEAK 34(16Q23.1) WILD-TYPE"   "DEL PEAK 34(16Q23.1) MUTATED" 
                    TCGA-CG-4449                     TCGA-CG-4455 
  "DEL PEAK 34(16Q23.1) MUTATED"   "DEL PEAK 34(16Q23.1) MUTATED" 
                    TCGA-CG-4460                     TCGA-CG-4462 
"DEL PEAK 34(16Q23.1) WILD-TYPE" "DEL PEAK 34(16Q23.1) WILD-TYPE" 
                    TCGA-CG-4465                     TCGA-CG-4466 
"DEL PEAK 34(16Q23.1) WILD-TYPE" "DEL PEAK 34(16Q23.1) WILD-TYPE" 
                    TCGA-CG-4469                     TCGA-CG-4472 
  "DEL PEAK 34(16Q23.1) MUTATED" "DEL PEAK 34(16Q23.1) WILD-TYPE" 
                    TCGA-CG-4474                     TCGA-CG-4477 
"DEL PEAK 34(16Q23.1) WILD-TYPE"   "DEL PEAK 34(16Q23.1) MUTATED" 
                    TCGA-CG-5716                     TCGA-CG-5717 
"DEL PEAK 34(16Q23.1) WILD-TYPE" "DEL PEAK 34(16Q23.1) WILD-TYPE" 
                    TCGA-CG-5718                     TCGA-CG-5719 
"DEL PEAK 34(16Q23.1) WILD-TYPE" "DEL PEAK 34(16Q23.1) WILD-TYPE" 
                    TCGA-CG-5720                     TCGA-CG-5721 
"DEL PEAK 34(16Q23.1) WILD-TYPE" "DEL PEAK 34(16Q23.1) WILD-TYPE" 
                    TCGA-CG-5722                     TCGA-CG-5723 
"DEL PEAK 34(16Q23.1) WILD-TYPE"   "DEL PEAK 34(16Q23.1) MUTATED" 
                    TCGA-CG-5724                     TCGA-CG-5725 
  "DEL PEAK 34(16Q23.1) MUTATED"   "DEL PEAK 34(16Q23.1) MUTATED" 
                    TCGA-CG-5726                     TCGA-CG-5727 
"DEL PEAK 34(16Q23.1) WILD-TYPE"   "DEL PEAK 34(16Q23.1) MUTATED" 
                    TCGA-CG-5728                     TCGA-CG-5730 
"DEL PEAK 34(16Q23.1) WILD-TYPE" "DEL PEAK 34(16Q23.1) WILD-TYPE" 
                    TCGA-CG-5732                     TCGA-CG-5733 
"DEL PEAK 34(16Q23.1) WILD-TYPE" "DEL PEAK 34(16Q23.1) WILD-TYPE" 
                    TCGA-CG-5734                     TCGA-D7-5577 
"DEL PEAK 34(16Q23.1) WILD-TYPE"   "DEL PEAK 34(16Q23.1) MUTATED" 
                    TCGA-D7-5578                     TCGA-D7-5579 
  "DEL PEAK 34(16Q23.1) MUTATED"   "DEL PEAK 34(16Q23.1) MUTATED" 
                    TCGA-D7-6518                     TCGA-D7-6519 
"DEL PEAK 34(16Q23.1) WILD-TYPE" "DEL PEAK 34(16Q23.1) WILD-TYPE" 
                    TCGA-D7-6520                     TCGA-D7-6521 
"DEL PEAK 34(16Q23.1) WILD-TYPE" "DEL PEAK 34(16Q23.1) WILD-TYPE" 
                    TCGA-D7-6522                     TCGA-D7-6524 
"DEL PEAK 34(16Q23.1) WILD-TYPE" "DEL PEAK 34(16Q23.1) WILD-TYPE" 
                    TCGA-D7-6525                     TCGA-D7-6526 
  "DEL PEAK 34(16Q23.1) MUTATED"   "DEL PEAK 34(16Q23.1) MUTATED" 
                    TCGA-D7-6527                     TCGA-D7-6528 
"DEL PEAK 34(16Q23.1) WILD-TYPE"   "DEL PEAK 34(16Q23.1) MUTATED" 
                    TCGA-D7-6815                     TCGA-D7-6817 
"DEL PEAK 34(16Q23.1) WILD-TYPE"   "DEL PEAK 34(16Q23.1) MUTATED" 
                    TCGA-D7-6818                     TCGA-D7-6820 
  "DEL PEAK 34(16Q23.1) MUTATED" "DEL PEAK 34(16Q23.1) WILD-TYPE" 
                    TCGA-D7-6822                     TCGA-EQ-5647 
"DEL PEAK 34(16Q23.1) WILD-TYPE" "DEL PEAK 34(16Q23.1) WILD-TYPE" 
                    TCGA-EQ-8122                     TCGA-F1-6177 
  "DEL PEAK 34(16Q23.1) MUTATED" "DEL PEAK 34(16Q23.1) WILD-TYPE" 
                    TCGA-F1-6874                     TCGA-F1-6875 
"DEL PEAK 34(16Q23.1) WILD-TYPE"   "DEL PEAK 34(16Q23.1) MUTATED" 
                    TCGA-FP-7735                     TCGA-FP-7829 
"DEL PEAK 34(16Q23.1) WILD-TYPE" "DEL PEAK 34(16Q23.1) WILD-TYPE" 
                    TCGA-FP-7916                     TCGA-FP-7998 
  "DEL PEAK 34(16Q23.1) MUTATED"   "DEL PEAK 34(16Q23.1) MUTATED" 
                    TCGA-HJ-7597                     TCGA-IN-7806 
"DEL PEAK 34(16Q23.1) WILD-TYPE" "DEL PEAK 34(16Q23.1) WILD-TYPE" 
                    TCGA-IN-7808                     TCGA-IP-7968 
  "DEL PEAK 34(16Q23.1) MUTATED" "DEL PEAK 34(16Q23.1) WILD-TYPE" 
[1] "hr=" "3.2"
D60V2, continuous
D60V3, binary
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  DEL PEAK 34(16Q23.1) MUTATED     16   40
  DEL PEAK 34(16Q23.1) WILD-TYPE   49   56
        clus
vv       DEL PEAK 34(16Q23.1) MUTATED DEL PEAK 34(16Q23.1) WILD-TYPE
  FEMALE                           16                             49
  MALE                             40                             56
D60V4, multiclass
D60V5, multiclass
    clus
vv   DEL PEAK 34(16Q23.1) MUTATED DEL PEAK 34(16Q23.1) WILD-TYPE
  T1                            1                              5
  T2                           22                             31
  T3                           25                             34
  T4                            6                             27
D60V6, multiclass
    clus
vv   DEL PEAK 34(16Q23.1) MUTATED DEL PEAK 34(16Q23.1) WILD-TYPE
  N0                           14                             36
  N1                           22                             35
  N2                            7                             17
  N3                           10                              9
D60V7, multiclass
    clus
vv   DEL PEAK 34(16Q23.1) MUTATED DEL PEAK 34(16Q23.1) WILD-TYPE
  M0                           49                             83
  M1                            2                             16
  MX                            5                              6
D60V8, multiclass
     clus
vv    DEL PEAK 34(16Q23.1) MUTATED DEL PEAK 34(16Q23.1) WILD-TYPE
  I                              8                             17
  II                            19                             24
  III                           19                             29
  IV                             6                             23
D60V9, binary
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  DEL PEAK 34(16Q23.1) MUTATED     53    3
  DEL PEAK 34(16Q23.1) WILD-TYPE  103    2
     clus
vv    DEL PEAK 34(16Q23.1) MUTATED DEL PEAK 34(16Q23.1) WILD-TYPE
  NO                             3                              2
  YES                           53                            103

Clustering(61) Variable = Del Peak 35(17p12) mutation analysis
D61V1, survival
                  TCGA-B7-5816                   TCGA-B7-5818 
"DEL PEAK 35(17P12) WILD-TYPE"   "DEL PEAK 35(17P12) MUTATED" 
                  TCGA-BR-6452                   TCGA-BR-6455 
"DEL PEAK 35(17P12) WILD-TYPE" "DEL PEAK 35(17P12) WILD-TYPE" 
                  TCGA-BR-6457                   TCGA-BR-6458 
"DEL PEAK 35(17P12) WILD-TYPE"   "DEL PEAK 35(17P12) MUTATED" 
                  TCGA-BR-6563                   TCGA-BR-6564 
"DEL PEAK 35(17P12) WILD-TYPE" "DEL PEAK 35(17P12) WILD-TYPE" 
                  TCGA-BR-6565                   TCGA-BR-6566 
  "DEL PEAK 35(17P12) MUTATED" "DEL PEAK 35(17P12) WILD-TYPE" 
                  TCGA-BR-6705                   TCGA-BR-6706 
"DEL PEAK 35(17P12) WILD-TYPE" "DEL PEAK 35(17P12) WILD-TYPE" 
                  TCGA-BR-6707                   TCGA-BR-6709 
"DEL PEAK 35(17P12) WILD-TYPE"   "DEL PEAK 35(17P12) MUTATED" 
                  TCGA-BR-6710                   TCGA-BR-6801 
"DEL PEAK 35(17P12) WILD-TYPE" "DEL PEAK 35(17P12) WILD-TYPE" 
                  TCGA-BR-6802                   TCGA-BR-6803 
"DEL PEAK 35(17P12) WILD-TYPE" "DEL PEAK 35(17P12) WILD-TYPE" 
                  TCGA-BR-6852                   TCGA-BR-7196 
"DEL PEAK 35(17P12) WILD-TYPE" "DEL PEAK 35(17P12) WILD-TYPE" 
                  TCGA-BR-7197                   TCGA-BR-7703 
  "DEL PEAK 35(17P12) MUTATED" "DEL PEAK 35(17P12) WILD-TYPE" 
                  TCGA-BR-7704                   TCGA-BR-7707 
  "DEL PEAK 35(17P12) MUTATED" "DEL PEAK 35(17P12) WILD-TYPE" 
                  TCGA-BR-7715                   TCGA-BR-7716 
  "DEL PEAK 35(17P12) MUTATED" "DEL PEAK 35(17P12) WILD-TYPE" 
                  TCGA-BR-7717                   TCGA-BR-7722 
"DEL PEAK 35(17P12) WILD-TYPE" "DEL PEAK 35(17P12) WILD-TYPE" 
                  TCGA-BR-7723                   TCGA-BR-7851 
  "DEL PEAK 35(17P12) MUTATED" "DEL PEAK 35(17P12) WILD-TYPE" 
                  TCGA-BR-7901                   TCGA-BR-7957 
"DEL PEAK 35(17P12) WILD-TYPE" "DEL PEAK 35(17P12) WILD-TYPE" 
                  TCGA-BR-7958                   TCGA-BR-7959 
"DEL PEAK 35(17P12) WILD-TYPE" "DEL PEAK 35(17P12) WILD-TYPE" 
                  TCGA-BR-8059                   TCGA-BR-8060 
"DEL PEAK 35(17P12) WILD-TYPE" "DEL PEAK 35(17P12) WILD-TYPE" 
                  TCGA-BR-8077                   TCGA-BR-8078 
"DEL PEAK 35(17P12) WILD-TYPE" "DEL PEAK 35(17P12) WILD-TYPE" 
                  TCGA-BR-8080                   TCGA-BR-8081 
"DEL PEAK 35(17P12) WILD-TYPE" "DEL PEAK 35(17P12) WILD-TYPE" 
                  TCGA-BR-8284                   TCGA-BR-8285 
"DEL PEAK 35(17P12) WILD-TYPE" "DEL PEAK 35(17P12) WILD-TYPE" 
                  TCGA-BR-8286                   TCGA-BR-8289 
"DEL PEAK 35(17P12) WILD-TYPE" "DEL PEAK 35(17P12) WILD-TYPE" 
                  TCGA-BR-8291                   TCGA-BR-8295 
"DEL PEAK 35(17P12) WILD-TYPE" "DEL PEAK 35(17P12) WILD-TYPE" 
                  TCGA-BR-8296                   TCGA-BR-8297 
"DEL PEAK 35(17P12) WILD-TYPE" "DEL PEAK 35(17P12) WILD-TYPE" 
                  TCGA-CD-5798                   TCGA-CD-5799 
"DEL PEAK 35(17P12) WILD-TYPE"   "DEL PEAK 35(17P12) MUTATED" 
                  TCGA-CD-5800                   TCGA-CD-5801 
  "DEL PEAK 35(17P12) MUTATED" "DEL PEAK 35(17P12) WILD-TYPE" 
                  TCGA-CD-5802                   TCGA-CD-5803 
"DEL PEAK 35(17P12) WILD-TYPE" "DEL PEAK 35(17P12) WILD-TYPE" 
                  TCGA-CG-4300                   TCGA-CG-4301 
  "DEL PEAK 35(17P12) MUTATED"   "DEL PEAK 35(17P12) MUTATED" 
                  TCGA-CG-4304                   TCGA-CG-4305 
  "DEL PEAK 35(17P12) MUTATED" "DEL PEAK 35(17P12) WILD-TYPE" 
                  TCGA-CG-4306                   TCGA-CG-4436 
"DEL PEAK 35(17P12) WILD-TYPE"   "DEL PEAK 35(17P12) MUTATED" 
                  TCGA-CG-4437                   TCGA-CG-4438 
  "DEL PEAK 35(17P12) MUTATED"   "DEL PEAK 35(17P12) MUTATED" 
                  TCGA-CG-4440                   TCGA-CG-4441 
  "DEL PEAK 35(17P12) MUTATED" "DEL PEAK 35(17P12) WILD-TYPE" 
                  TCGA-CG-4443                   TCGA-CG-4444 
  "DEL PEAK 35(17P12) MUTATED"   "DEL PEAK 35(17P12) MUTATED" 
                  TCGA-CG-4449                   TCGA-CG-4455 
  "DEL PEAK 35(17P12) MUTATED" "DEL PEAK 35(17P12) WILD-TYPE" 
                  TCGA-CG-4460                   TCGA-CG-4462 
"DEL PEAK 35(17P12) WILD-TYPE" "DEL PEAK 35(17P12) WILD-TYPE" 
                  TCGA-CG-4465                   TCGA-CG-4466 
"DEL PEAK 35(17P12) WILD-TYPE" "DEL PEAK 35(17P12) WILD-TYPE" 
                  TCGA-CG-4469                   TCGA-CG-4472 
  "DEL PEAK 35(17P12) MUTATED" "DEL PEAK 35(17P12) WILD-TYPE" 
                  TCGA-CG-4474                   TCGA-CG-4477 
"DEL PEAK 35(17P12) WILD-TYPE"   "DEL PEAK 35(17P12) MUTATED" 
                  TCGA-CG-5716                   TCGA-CG-5717 
"DEL PEAK 35(17P12) WILD-TYPE" "DEL PEAK 35(17P12) WILD-TYPE" 
                  TCGA-CG-5718                   TCGA-CG-5719 
  "DEL PEAK 35(17P12) MUTATED"   "DEL PEAK 35(17P12) MUTATED" 
                  TCGA-CG-5720                   TCGA-CG-5721 
"DEL PEAK 35(17P12) WILD-TYPE" "DEL PEAK 35(17P12) WILD-TYPE" 
                  TCGA-CG-5722                   TCGA-CG-5723 
"DEL PEAK 35(17P12) WILD-TYPE" "DEL PEAK 35(17P12) WILD-TYPE" 
                  TCGA-CG-5724                   TCGA-CG-5725 
"DEL PEAK 35(17P12) WILD-TYPE"   "DEL PEAK 35(17P12) MUTATED" 
                  TCGA-CG-5726                   TCGA-CG-5727 
"DEL PEAK 35(17P12) WILD-TYPE"   "DEL PEAK 35(17P12) MUTATED" 
                  TCGA-CG-5728                   TCGA-CG-5730 
"DEL PEAK 35(17P12) WILD-TYPE"   "DEL PEAK 35(17P12) MUTATED" 
                  TCGA-CG-5732                   TCGA-CG-5733 
  "DEL PEAK 35(17P12) MUTATED" "DEL PEAK 35(17P12) WILD-TYPE" 
                  TCGA-CG-5734                   TCGA-D7-5577 
"DEL PEAK 35(17P12) WILD-TYPE" "DEL PEAK 35(17P12) WILD-TYPE" 
                  TCGA-D7-5578                   TCGA-D7-5579 
"DEL PEAK 35(17P12) WILD-TYPE"   "DEL PEAK 35(17P12) MUTATED" 
                  TCGA-D7-6518                   TCGA-D7-6519 
"DEL PEAK 35(17P12) WILD-TYPE"   "DEL PEAK 35(17P12) MUTATED" 
                  TCGA-D7-6520                   TCGA-D7-6521 
  "DEL PEAK 35(17P12) MUTATED"   "DEL PEAK 35(17P12) MUTATED" 
                  TCGA-D7-6522                   TCGA-D7-6524 
"DEL PEAK 35(17P12) WILD-TYPE" "DEL PEAK 35(17P12) WILD-TYPE" 
                  TCGA-D7-6525                   TCGA-D7-6526 
  "DEL PEAK 35(17P12) MUTATED"   "DEL PEAK 35(17P12) MUTATED" 
                  TCGA-D7-6527                   TCGA-D7-6528 
  "DEL PEAK 35(17P12) MUTATED"   "DEL PEAK 35(17P12) MUTATED" 
                  TCGA-D7-6815                   TCGA-D7-6817 
  "DEL PEAK 35(17P12) MUTATED" "DEL PEAK 35(17P12) WILD-TYPE" 
                  TCGA-D7-6818                   TCGA-D7-6820 
"DEL PEAK 35(17P12) WILD-TYPE"   "DEL PEAK 35(17P12) MUTATED" 
                  TCGA-D7-6822                   TCGA-EQ-5647 
  "DEL PEAK 35(17P12) MUTATED" "DEL PEAK 35(17P12) WILD-TYPE" 
                  TCGA-EQ-8122                   TCGA-F1-6177 
"DEL PEAK 35(17P12) WILD-TYPE" "DEL PEAK 35(17P12) WILD-TYPE" 
                  TCGA-F1-6874                   TCGA-F1-6875 
"DEL PEAK 35(17P12) WILD-TYPE"   "DEL PEAK 35(17P12) MUTATED" 
                  TCGA-FP-7735                   TCGA-FP-7829 
"DEL PEAK 35(17P12) WILD-TYPE" "DEL PEAK 35(17P12) WILD-TYPE" 
                  TCGA-FP-7916                   TCGA-FP-7998 
  "DEL PEAK 35(17P12) MUTATED" "DEL PEAK 35(17P12) WILD-TYPE" 
                  TCGA-HJ-7597                   TCGA-IN-7806 
  "DEL PEAK 35(17P12) MUTATED"   "DEL PEAK 35(17P12) MUTATED" 
                  TCGA-IN-7808                   TCGA-IP-7968 
"DEL PEAK 35(17P12) WILD-TYPE"   "DEL PEAK 35(17P12) MUTATED" 
                  TCGA-B7-5816                   TCGA-B7-5818 
"DEL PEAK 35(17P12) WILD-TYPE"   "DEL PEAK 35(17P12) MUTATED" 
                  TCGA-BR-6452                   TCGA-BR-6455 
"DEL PEAK 35(17P12) WILD-TYPE" "DEL PEAK 35(17P12) WILD-TYPE" 
                  TCGA-BR-6457                   TCGA-BR-6458 
"DEL PEAK 35(17P12) WILD-TYPE"   "DEL PEAK 35(17P12) MUTATED" 
                  TCGA-BR-6563                   TCGA-BR-6564 
"DEL PEAK 35(17P12) WILD-TYPE" "DEL PEAK 35(17P12) WILD-TYPE" 
                  TCGA-BR-6565                   TCGA-BR-6566 
  "DEL PEAK 35(17P12) MUTATED" "DEL PEAK 35(17P12) WILD-TYPE" 
                  TCGA-BR-6705                   TCGA-BR-6706 
"DEL PEAK 35(17P12) WILD-TYPE" "DEL PEAK 35(17P12) WILD-TYPE" 
                  TCGA-BR-6707                   TCGA-BR-6709 
"DEL PEAK 35(17P12) WILD-TYPE"   "DEL PEAK 35(17P12) MUTATED" 
                  TCGA-BR-6710                   TCGA-BR-6801 
"DEL PEAK 35(17P12) WILD-TYPE" "DEL PEAK 35(17P12) WILD-TYPE" 
                  TCGA-BR-6802                   TCGA-BR-6803 
"DEL PEAK 35(17P12) WILD-TYPE" "DEL PEAK 35(17P12) WILD-TYPE" 
                  TCGA-BR-6852                   TCGA-BR-7196 
"DEL PEAK 35(17P12) WILD-TYPE" "DEL PEAK 35(17P12) WILD-TYPE" 
                  TCGA-BR-7197                   TCGA-BR-7703 
  "DEL PEAK 35(17P12) MUTATED" "DEL PEAK 35(17P12) WILD-TYPE" 
                  TCGA-BR-7704                   TCGA-BR-7707 
  "DEL PEAK 35(17P12) MUTATED" "DEL PEAK 35(17P12) WILD-TYPE" 
                  TCGA-BR-7715                   TCGA-BR-7716 
  "DEL PEAK 35(17P12) MUTATED" "DEL PEAK 35(17P12) WILD-TYPE" 
                  TCGA-BR-7717                   TCGA-BR-7722 
"DEL PEAK 35(17P12) WILD-TYPE" "DEL PEAK 35(17P12) WILD-TYPE" 
                  TCGA-BR-7723                   TCGA-BR-7851 
  "DEL PEAK 35(17P12) MUTATED" "DEL PEAK 35(17P12) WILD-TYPE" 
                  TCGA-BR-7901                   TCGA-BR-7957 
"DEL PEAK 35(17P12) WILD-TYPE" "DEL PEAK 35(17P12) WILD-TYPE" 
                  TCGA-BR-7958                   TCGA-BR-7959 
"DEL PEAK 35(17P12) WILD-TYPE" "DEL PEAK 35(17P12) WILD-TYPE" 
                  TCGA-BR-8059                   TCGA-BR-8060 
"DEL PEAK 35(17P12) WILD-TYPE" "DEL PEAK 35(17P12) WILD-TYPE" 
                  TCGA-BR-8077                   TCGA-BR-8078 
"DEL PEAK 35(17P12) WILD-TYPE" "DEL PEAK 35(17P12) WILD-TYPE" 
                  TCGA-BR-8080                   TCGA-BR-8081 
"DEL PEAK 35(17P12) WILD-TYPE" "DEL PEAK 35(17P12) WILD-TYPE" 
                  TCGA-BR-8284                   TCGA-BR-8285 
"DEL PEAK 35(17P12) WILD-TYPE" "DEL PEAK 35(17P12) WILD-TYPE" 
                  TCGA-BR-8286                   TCGA-BR-8289 
"DEL PEAK 35(17P12) WILD-TYPE" "DEL PEAK 35(17P12) WILD-TYPE" 
                  TCGA-BR-8291                   TCGA-BR-8295 
"DEL PEAK 35(17P12) WILD-TYPE" "DEL PEAK 35(17P12) WILD-TYPE" 
                  TCGA-BR-8296                   TCGA-BR-8297 
"DEL PEAK 35(17P12) WILD-TYPE" "DEL PEAK 35(17P12) WILD-TYPE" 
                  TCGA-CD-5798                   TCGA-CD-5799 
"DEL PEAK 35(17P12) WILD-TYPE"   "DEL PEAK 35(17P12) MUTATED" 
                  TCGA-CD-5800                   TCGA-CD-5801 
  "DEL PEAK 35(17P12) MUTATED" "DEL PEAK 35(17P12) WILD-TYPE" 
                  TCGA-CD-5802                   TCGA-CD-5803 
"DEL PEAK 35(17P12) WILD-TYPE" "DEL PEAK 35(17P12) WILD-TYPE" 
                  TCGA-CG-4300                   TCGA-CG-4301 
  "DEL PEAK 35(17P12) MUTATED"   "DEL PEAK 35(17P12) MUTATED" 
                  TCGA-CG-4304                   TCGA-CG-4305 
  "DEL PEAK 35(17P12) MUTATED" "DEL PEAK 35(17P12) WILD-TYPE" 
                  TCGA-CG-4306                   TCGA-CG-4436 
"DEL PEAK 35(17P12) WILD-TYPE"   "DEL PEAK 35(17P12) MUTATED" 
                  TCGA-CG-4437                   TCGA-CG-4438 
  "DEL PEAK 35(17P12) MUTATED"   "DEL PEAK 35(17P12) MUTATED" 
                  TCGA-CG-4440                   TCGA-CG-4441 
  "DEL PEAK 35(17P12) MUTATED" "DEL PEAK 35(17P12) WILD-TYPE" 
                  TCGA-CG-4443                   TCGA-CG-4444 
  "DEL PEAK 35(17P12) MUTATED"   "DEL PEAK 35(17P12) MUTATED" 
                  TCGA-CG-4449                   TCGA-CG-4455 
  "DEL PEAK 35(17P12) MUTATED" "DEL PEAK 35(17P12) WILD-TYPE" 
                  TCGA-CG-4460                   TCGA-CG-4462 
"DEL PEAK 35(17P12) WILD-TYPE" "DEL PEAK 35(17P12) WILD-TYPE" 
                  TCGA-CG-4465                   TCGA-CG-4466 
"DEL PEAK 35(17P12) WILD-TYPE" "DEL PEAK 35(17P12) WILD-TYPE" 
                  TCGA-CG-4469                   TCGA-CG-4472 
  "DEL PEAK 35(17P12) MUTATED" "DEL PEAK 35(17P12) WILD-TYPE" 
                  TCGA-CG-4474                   TCGA-CG-4477 
"DEL PEAK 35(17P12) WILD-TYPE"   "DEL PEAK 35(17P12) MUTATED" 
                  TCGA-CG-5716                   TCGA-CG-5717 
"DEL PEAK 35(17P12) WILD-TYPE" "DEL PEAK 35(17P12) WILD-TYPE" 
                  TCGA-CG-5718                   TCGA-CG-5719 
  "DEL PEAK 35(17P12) MUTATED"   "DEL PEAK 35(17P12) MUTATED" 
                  TCGA-CG-5720                   TCGA-CG-5721 
"DEL PEAK 35(17P12) WILD-TYPE" "DEL PEAK 35(17P12) WILD-TYPE" 
                  TCGA-CG-5722                   TCGA-CG-5723 
"DEL PEAK 35(17P12) WILD-TYPE" "DEL PEAK 35(17P12) WILD-TYPE" 
                  TCGA-CG-5724                   TCGA-CG-5725 
"DEL PEAK 35(17P12) WILD-TYPE"   "DEL PEAK 35(17P12) MUTATED" 
                  TCGA-CG-5726                   TCGA-CG-5727 
"DEL PEAK 35(17P12) WILD-TYPE"   "DEL PEAK 35(17P12) MUTATED" 
                  TCGA-CG-5728                   TCGA-CG-5730 
"DEL PEAK 35(17P12) WILD-TYPE"   "DEL PEAK 35(17P12) MUTATED" 
                  TCGA-CG-5732                   TCGA-CG-5733 
  "DEL PEAK 35(17P12) MUTATED" "DEL PEAK 35(17P12) WILD-TYPE" 
                  TCGA-CG-5734                   TCGA-D7-5577 
"DEL PEAK 35(17P12) WILD-TYPE" "DEL PEAK 35(17P12) WILD-TYPE" 
                  TCGA-D7-5578                   TCGA-D7-5579 
"DEL PEAK 35(17P12) WILD-TYPE"   "DEL PEAK 35(17P12) MUTATED" 
                  TCGA-D7-6518                   TCGA-D7-6519 
"DEL PEAK 35(17P12) WILD-TYPE"   "DEL PEAK 35(17P12) MUTATED" 
                  TCGA-D7-6520                   TCGA-D7-6521 
  "DEL PEAK 35(17P12) MUTATED"   "DEL PEAK 35(17P12) MUTATED" 
                  TCGA-D7-6522                   TCGA-D7-6524 
"DEL PEAK 35(17P12) WILD-TYPE" "DEL PEAK 35(17P12) WILD-TYPE" 
                  TCGA-D7-6525                   TCGA-D7-6526 
  "DEL PEAK 35(17P12) MUTATED"   "DEL PEAK 35(17P12) MUTATED" 
                  TCGA-D7-6527                   TCGA-D7-6528 
  "DEL PEAK 35(17P12) MUTATED"   "DEL PEAK 35(17P12) MUTATED" 
                  TCGA-D7-6815                   TCGA-D7-6817 
  "DEL PEAK 35(17P12) MUTATED" "DEL PEAK 35(17P12) WILD-TYPE" 
                  TCGA-D7-6818                   TCGA-D7-6820 
"DEL PEAK 35(17P12) WILD-TYPE"   "DEL PEAK 35(17P12) MUTATED" 
                  TCGA-D7-6822                   TCGA-EQ-5647 
  "DEL PEAK 35(17P12) MUTATED" "DEL PEAK 35(17P12) WILD-TYPE" 
                  TCGA-EQ-8122                   TCGA-F1-6177 
"DEL PEAK 35(17P12) WILD-TYPE" "DEL PEAK 35(17P12) WILD-TYPE" 
                  TCGA-F1-6874                   TCGA-F1-6875 
"DEL PEAK 35(17P12) WILD-TYPE"   "DEL PEAK 35(17P12) MUTATED" 
                  TCGA-FP-7735                   TCGA-FP-7829 
"DEL PEAK 35(17P12) WILD-TYPE" "DEL PEAK 35(17P12) WILD-TYPE" 
                  TCGA-FP-7916                   TCGA-FP-7998 
  "DEL PEAK 35(17P12) MUTATED" "DEL PEAK 35(17P12) WILD-TYPE" 
                  TCGA-HJ-7597                   TCGA-IN-7806 
  "DEL PEAK 35(17P12) MUTATED"   "DEL PEAK 35(17P12) MUTATED" 
                  TCGA-IN-7808                   TCGA-IP-7968 
"DEL PEAK 35(17P12) WILD-TYPE"   "DEL PEAK 35(17P12) MUTATED" 
                  TCGA-B7-5816                   TCGA-B7-5818 
"DEL PEAK 35(17P12) WILD-TYPE"   "DEL PEAK 35(17P12) MUTATED" 
                  TCGA-BR-6452                   TCGA-BR-6455 
"DEL PEAK 35(17P12) WILD-TYPE" "DEL PEAK 35(17P12) WILD-TYPE" 
                  TCGA-BR-6457                   TCGA-BR-6458 
"DEL PEAK 35(17P12) WILD-TYPE"   "DEL PEAK 35(17P12) MUTATED" 
                  TCGA-BR-6563                   TCGA-BR-6564 
"DEL PEAK 35(17P12) WILD-TYPE" "DEL PEAK 35(17P12) WILD-TYPE" 
                  TCGA-BR-6565                   TCGA-BR-6566 
  "DEL PEAK 35(17P12) MUTATED" "DEL PEAK 35(17P12) WILD-TYPE" 
                  TCGA-BR-6705                   TCGA-BR-6706 
"DEL PEAK 35(17P12) WILD-TYPE" "DEL PEAK 35(17P12) WILD-TYPE" 
                  TCGA-BR-6707                   TCGA-BR-6709 
"DEL PEAK 35(17P12) WILD-TYPE"   "DEL PEAK 35(17P12) MUTATED" 
                  TCGA-BR-6710                   TCGA-BR-6801 
"DEL PEAK 35(17P12) WILD-TYPE" "DEL PEAK 35(17P12) WILD-TYPE" 
                  TCGA-BR-6802                   TCGA-BR-6803 
"DEL PEAK 35(17P12) WILD-TYPE" "DEL PEAK 35(17P12) WILD-TYPE" 
                  TCGA-BR-6852                   TCGA-BR-7196 
"DEL PEAK 35(17P12) WILD-TYPE" "DEL PEAK 35(17P12) WILD-TYPE" 
                  TCGA-BR-7197                   TCGA-BR-7703 
  "DEL PEAK 35(17P12) MUTATED" "DEL PEAK 35(17P12) WILD-TYPE" 
                  TCGA-BR-7704                   TCGA-BR-7707 
  "DEL PEAK 35(17P12) MUTATED" "DEL PEAK 35(17P12) WILD-TYPE" 
                  TCGA-BR-7715                   TCGA-BR-7716 
  "DEL PEAK 35(17P12) MUTATED" "DEL PEAK 35(17P12) WILD-TYPE" 
                  TCGA-BR-7717                   TCGA-BR-7722 
"DEL PEAK 35(17P12) WILD-TYPE" "DEL PEAK 35(17P12) WILD-TYPE" 
                  TCGA-BR-7723                   TCGA-BR-7851 
  "DEL PEAK 35(17P12) MUTATED" "DEL PEAK 35(17P12) WILD-TYPE" 
                  TCGA-BR-7901                   TCGA-BR-7957 
"DEL PEAK 35(17P12) WILD-TYPE" "DEL PEAK 35(17P12) WILD-TYPE" 
                  TCGA-BR-7958                   TCGA-BR-7959 
"DEL PEAK 35(17P12) WILD-TYPE" "DEL PEAK 35(17P12) WILD-TYPE" 
                  TCGA-BR-8059                   TCGA-BR-8060 
"DEL PEAK 35(17P12) WILD-TYPE" "DEL PEAK 35(17P12) WILD-TYPE" 
                  TCGA-BR-8077                   TCGA-BR-8078 
"DEL PEAK 35(17P12) WILD-TYPE" "DEL PEAK 35(17P12) WILD-TYPE" 
                  TCGA-BR-8080                   TCGA-BR-8081 
"DEL PEAK 35(17P12) WILD-TYPE" "DEL PEAK 35(17P12) WILD-TYPE" 
                  TCGA-BR-8284                   TCGA-BR-8285 
"DEL PEAK 35(17P12) WILD-TYPE" "DEL PEAK 35(17P12) WILD-TYPE" 
                  TCGA-BR-8286                   TCGA-BR-8289 
"DEL PEAK 35(17P12) WILD-TYPE" "DEL PEAK 35(17P12) WILD-TYPE" 
                  TCGA-BR-8291                   TCGA-BR-8295 
"DEL PEAK 35(17P12) WILD-TYPE" "DEL PEAK 35(17P12) WILD-TYPE" 
                  TCGA-BR-8296                   TCGA-BR-8297 
"DEL PEAK 35(17P12) WILD-TYPE" "DEL PEAK 35(17P12) WILD-TYPE" 
                  TCGA-CD-5798                   TCGA-CD-5799 
"DEL PEAK 35(17P12) WILD-TYPE"   "DEL PEAK 35(17P12) MUTATED" 
                  TCGA-CD-5800                   TCGA-CD-5801 
  "DEL PEAK 35(17P12) MUTATED" "DEL PEAK 35(17P12) WILD-TYPE" 
                  TCGA-CD-5802                   TCGA-CD-5803 
"DEL PEAK 35(17P12) WILD-TYPE" "DEL PEAK 35(17P12) WILD-TYPE" 
                  TCGA-CG-4300                   TCGA-CG-4301 
  "DEL PEAK 35(17P12) MUTATED"   "DEL PEAK 35(17P12) MUTATED" 
                  TCGA-CG-4304                   TCGA-CG-4305 
  "DEL PEAK 35(17P12) MUTATED" "DEL PEAK 35(17P12) WILD-TYPE" 
                  TCGA-CG-4306                   TCGA-CG-4436 
"DEL PEAK 35(17P12) WILD-TYPE"   "DEL PEAK 35(17P12) MUTATED" 
                  TCGA-CG-4437                   TCGA-CG-4438 
  "DEL PEAK 35(17P12) MUTATED"   "DEL PEAK 35(17P12) MUTATED" 
                  TCGA-CG-4440                   TCGA-CG-4441 
  "DEL PEAK 35(17P12) MUTATED" "DEL PEAK 35(17P12) WILD-TYPE" 
                  TCGA-CG-4443                   TCGA-CG-4444 
  "DEL PEAK 35(17P12) MUTATED"   "DEL PEAK 35(17P12) MUTATED" 
                  TCGA-CG-4449                   TCGA-CG-4455 
  "DEL PEAK 35(17P12) MUTATED" "DEL PEAK 35(17P12) WILD-TYPE" 
                  TCGA-CG-4460                   TCGA-CG-4462 
"DEL PEAK 35(17P12) WILD-TYPE" "DEL PEAK 35(17P12) WILD-TYPE" 
                  TCGA-CG-4465                   TCGA-CG-4466 
"DEL PEAK 35(17P12) WILD-TYPE" "DEL PEAK 35(17P12) WILD-TYPE" 
                  TCGA-CG-4469                   TCGA-CG-4472 
  "DEL PEAK 35(17P12) MUTATED" "DEL PEAK 35(17P12) WILD-TYPE" 
                  TCGA-CG-4474                   TCGA-CG-4477 
"DEL PEAK 35(17P12) WILD-TYPE"   "DEL PEAK 35(17P12) MUTATED" 
                  TCGA-CG-5716                   TCGA-CG-5717 
"DEL PEAK 35(17P12) WILD-TYPE" "DEL PEAK 35(17P12) WILD-TYPE" 
                  TCGA-CG-5718                   TCGA-CG-5719 
  "DEL PEAK 35(17P12) MUTATED"   "DEL PEAK 35(17P12) MUTATED" 
                  TCGA-CG-5720                   TCGA-CG-5721 
"DEL PEAK 35(17P12) WILD-TYPE" "DEL PEAK 35(17P12) WILD-TYPE" 
                  TCGA-CG-5722                   TCGA-CG-5723 
"DEL PEAK 35(17P12) WILD-TYPE" "DEL PEAK 35(17P12) WILD-TYPE" 
                  TCGA-CG-5724                   TCGA-CG-5725 
"DEL PEAK 35(17P12) WILD-TYPE"   "DEL PEAK 35(17P12) MUTATED" 
                  TCGA-CG-5726                   TCGA-CG-5727 
"DEL PEAK 35(17P12) WILD-TYPE"   "DEL PEAK 35(17P12) MUTATED" 
                  TCGA-CG-5728                   TCGA-CG-5730 
"DEL PEAK 35(17P12) WILD-TYPE"   "DEL PEAK 35(17P12) MUTATED" 
                  TCGA-CG-5732                   TCGA-CG-5733 
  "DEL PEAK 35(17P12) MUTATED" "DEL PEAK 35(17P12) WILD-TYPE" 
                  TCGA-CG-5734                   TCGA-D7-5577 
"DEL PEAK 35(17P12) WILD-TYPE" "DEL PEAK 35(17P12) WILD-TYPE" 
                  TCGA-D7-5578                   TCGA-D7-5579 
"DEL PEAK 35(17P12) WILD-TYPE"   "DEL PEAK 35(17P12) MUTATED" 
                  TCGA-D7-6518                   TCGA-D7-6519 
"DEL PEAK 35(17P12) WILD-TYPE"   "DEL PEAK 35(17P12) MUTATED" 
                  TCGA-D7-6520                   TCGA-D7-6521 
  "DEL PEAK 35(17P12) MUTATED"   "DEL PEAK 35(17P12) MUTATED" 
                  TCGA-D7-6522                   TCGA-D7-6524 
"DEL PEAK 35(17P12) WILD-TYPE" "DEL PEAK 35(17P12) WILD-TYPE" 
                  TCGA-D7-6525                   TCGA-D7-6526 
  "DEL PEAK 35(17P12) MUTATED"   "DEL PEAK 35(17P12) MUTATED" 
                  TCGA-D7-6527                   TCGA-D7-6528 
  "DEL PEAK 35(17P12) MUTATED"   "DEL PEAK 35(17P12) MUTATED" 
                  TCGA-D7-6815                   TCGA-D7-6817 
  "DEL PEAK 35(17P12) MUTATED" "DEL PEAK 35(17P12) WILD-TYPE" 
                  TCGA-D7-6818                   TCGA-D7-6820 
"DEL PEAK 35(17P12) WILD-TYPE"   "DEL PEAK 35(17P12) MUTATED" 
                  TCGA-D7-6822                   TCGA-EQ-5647 
  "DEL PEAK 35(17P12) MUTATED" "DEL PEAK 35(17P12) WILD-TYPE" 
                  TCGA-EQ-8122                   TCGA-F1-6177 
"DEL PEAK 35(17P12) WILD-TYPE" "DEL PEAK 35(17P12) WILD-TYPE" 
                  TCGA-F1-6874                   TCGA-F1-6875 
"DEL PEAK 35(17P12) WILD-TYPE"   "DEL PEAK 35(17P12) MUTATED" 
                  TCGA-FP-7735                   TCGA-FP-7829 
"DEL PEAK 35(17P12) WILD-TYPE" "DEL PEAK 35(17P12) WILD-TYPE" 
                  TCGA-FP-7916                   TCGA-FP-7998 
  "DEL PEAK 35(17P12) MUTATED" "DEL PEAK 35(17P12) WILD-TYPE" 
                  TCGA-HJ-7597                   TCGA-IN-7806 
  "DEL PEAK 35(17P12) MUTATED"   "DEL PEAK 35(17P12) MUTATED" 
                  TCGA-IN-7808                   TCGA-IP-7968 
"DEL PEAK 35(17P12) WILD-TYPE"   "DEL PEAK 35(17P12) MUTATED" 
[1] "hr=" "3.8"
D61V2, continuous
D61V3, binary
[1] "tbl2"
                              cls
clus                           [,1] [,2]
  DEL PEAK 35(17P12) MUTATED     20   35
  DEL PEAK 35(17P12) WILD-TYPE   45   61
        clus
vv       DEL PEAK 35(17P12) MUTATED DEL PEAK 35(17P12) WILD-TYPE
  FEMALE                         20                           45
  MALE                           35                           61
D61V4, multiclass
D61V5, multiclass
    clus
vv   DEL PEAK 35(17P12) MUTATED DEL PEAK 35(17P12) WILD-TYPE
  T1                          1                            5
  T2                         28                           25
  T3                         20                           39
  T4                          4                           29
D61V6, multiclass
    clus
vv   DEL PEAK 35(17P12) MUTATED DEL PEAK 35(17P12) WILD-TYPE
  N0                         20                           30
  N1                         16                           41
  N2                         12                           12
  N3                          5                           14
D61V7, multiclass
    clus
vv   DEL PEAK 35(17P12) MUTATED DEL PEAK 35(17P12) WILD-TYPE
  M0                         47                           85
  M1                          4                           14
  MX                          4                            7
D61V8, multiclass
     clus
vv    DEL PEAK 35(17P12) MUTATED DEL PEAK 35(17P12) WILD-TYPE
  I                           12                           13
  II                          18                           25
  III                         14                           34
  IV                           8                           21
D61V9, binary
[1] "tbl2"
                              cls
clus                           [,1] [,2]
  DEL PEAK 35(17P12) MUTATED     51    4
  DEL PEAK 35(17P12) WILD-TYPE  105    1
     clus
vv    DEL PEAK 35(17P12) MUTATED DEL PEAK 35(17P12) WILD-TYPE
  NO                           4                            1
  YES                         51                          105

Clustering(62) Variable = Del Peak 36(17q24.3) mutation analysis
D62V1, survival
                    TCGA-B7-5816                     TCGA-B7-5818 
"DEL PEAK 36(17Q24.3) WILD-TYPE" "DEL PEAK 36(17Q24.3) WILD-TYPE" 
                    TCGA-BR-6452                     TCGA-BR-6455 
"DEL PEAK 36(17Q24.3) WILD-TYPE" "DEL PEAK 36(17Q24.3) WILD-TYPE" 
                    TCGA-BR-6457                     TCGA-BR-6458 
"DEL PEAK 36(17Q24.3) WILD-TYPE"   "DEL PEAK 36(17Q24.3) MUTATED" 
                    TCGA-BR-6563                     TCGA-BR-6564 
"DEL PEAK 36(17Q24.3) WILD-TYPE" "DEL PEAK 36(17Q24.3) WILD-TYPE" 
                    TCGA-BR-6565                     TCGA-BR-6566 
  "DEL PEAK 36(17Q24.3) MUTATED" "DEL PEAK 36(17Q24.3) WILD-TYPE" 
                    TCGA-BR-6705                     TCGA-BR-6706 
"DEL PEAK 36(17Q24.3) WILD-TYPE" "DEL PEAK 36(17Q24.3) WILD-TYPE" 
                    TCGA-BR-6707                     TCGA-BR-6709 
"DEL PEAK 36(17Q24.3) WILD-TYPE" "DEL PEAK 36(17Q24.3) WILD-TYPE" 
                    TCGA-BR-6710                     TCGA-BR-6801 
"DEL PEAK 36(17Q24.3) WILD-TYPE" "DEL PEAK 36(17Q24.3) WILD-TYPE" 
                    TCGA-BR-6802                     TCGA-BR-6803 
"DEL PEAK 36(17Q24.3) WILD-TYPE" "DEL PEAK 36(17Q24.3) WILD-TYPE" 
                    TCGA-BR-6852                     TCGA-BR-7196 
"DEL PEAK 36(17Q24.3) WILD-TYPE" "DEL PEAK 36(17Q24.3) WILD-TYPE" 
                    TCGA-BR-7197                     TCGA-BR-7703 
"DEL PEAK 36(17Q24.3) WILD-TYPE" "DEL PEAK 36(17Q24.3) WILD-TYPE" 
                    TCGA-BR-7704                     TCGA-BR-7707 
"DEL PEAK 36(17Q24.3) WILD-TYPE" "DEL PEAK 36(17Q24.3) WILD-TYPE" 
                    TCGA-BR-7715                     TCGA-BR-7716 
  "DEL PEAK 36(17Q24.3) MUTATED" "DEL PEAK 36(17Q24.3) WILD-TYPE" 
                    TCGA-BR-7717                     TCGA-BR-7722 
"DEL PEAK 36(17Q24.3) WILD-TYPE" "DEL PEAK 36(17Q24.3) WILD-TYPE" 
                    TCGA-BR-7723                     TCGA-BR-7851 
  "DEL PEAK 36(17Q24.3) MUTATED" "DEL PEAK 36(17Q24.3) WILD-TYPE" 
                    TCGA-BR-7901                     TCGA-BR-7957 
"DEL PEAK 36(17Q24.3) WILD-TYPE" "DEL PEAK 36(17Q24.3) WILD-TYPE" 
                    TCGA-BR-7958                     TCGA-BR-7959 
"DEL PEAK 36(17Q24.3) WILD-TYPE" "DEL PEAK 36(17Q24.3) WILD-TYPE" 
                    TCGA-BR-8059                     TCGA-BR-8060 
"DEL PEAK 36(17Q24.3) WILD-TYPE" "DEL PEAK 36(17Q24.3) WILD-TYPE" 
                    TCGA-BR-8077                     TCGA-BR-8078 
"DEL PEAK 36(17Q24.3) WILD-TYPE" "DEL PEAK 36(17Q24.3) WILD-TYPE" 
                    TCGA-BR-8080                     TCGA-BR-8081 
"DEL PEAK 36(17Q24.3) WILD-TYPE" "DEL PEAK 36(17Q24.3) WILD-TYPE" 
                    TCGA-BR-8284                     TCGA-BR-8285 
"DEL PEAK 36(17Q24.3) WILD-TYPE" "DEL PEAK 36(17Q24.3) WILD-TYPE" 
                    TCGA-BR-8286                     TCGA-BR-8289 
"DEL PEAK 36(17Q24.3) WILD-TYPE" "DEL PEAK 36(17Q24.3) WILD-TYPE" 
                    TCGA-BR-8291                     TCGA-BR-8295 
"DEL PEAK 36(17Q24.3) WILD-TYPE" "DEL PEAK 36(17Q24.3) WILD-TYPE" 
                    TCGA-BR-8296                     TCGA-BR-8297 
"DEL PEAK 36(17Q24.3) WILD-TYPE" "DEL PEAK 36(17Q24.3) WILD-TYPE" 
                    TCGA-CD-5798                     TCGA-CD-5799 
"DEL PEAK 36(17Q24.3) WILD-TYPE" "DEL PEAK 36(17Q24.3) WILD-TYPE" 
                    TCGA-CD-5800                     TCGA-CD-5801 
"DEL PEAK 36(17Q24.3) WILD-TYPE" "DEL PEAK 36(17Q24.3) WILD-TYPE" 
                    TCGA-CD-5802                     TCGA-CD-5803 
"DEL PEAK 36(17Q24.3) WILD-TYPE" "DEL PEAK 36(17Q24.3) WILD-TYPE" 
                    TCGA-CG-4300                     TCGA-CG-4301 
  "DEL PEAK 36(17Q24.3) MUTATED" "DEL PEAK 36(17Q24.3) WILD-TYPE" 
                    TCGA-CG-4304                     TCGA-CG-4305 
"DEL PEAK 36(17Q24.3) WILD-TYPE" "DEL PEAK 36(17Q24.3) WILD-TYPE" 
                    TCGA-CG-4306                     TCGA-CG-4436 
"DEL PEAK 36(17Q24.3) WILD-TYPE" "DEL PEAK 36(17Q24.3) WILD-TYPE" 
                    TCGA-CG-4437                     TCGA-CG-4438 
"DEL PEAK 36(17Q24.3) WILD-TYPE"   "DEL PEAK 36(17Q24.3) MUTATED" 
                    TCGA-CG-4440                     TCGA-CG-4441 
  "DEL PEAK 36(17Q24.3) MUTATED"   "DEL PEAK 36(17Q24.3) MUTATED" 
                    TCGA-CG-4443                     TCGA-CG-4444 
"DEL PEAK 36(17Q24.3) WILD-TYPE"   "DEL PEAK 36(17Q24.3) MUTATED" 
                    TCGA-CG-4449                     TCGA-CG-4455 
"DEL PEAK 36(17Q24.3) WILD-TYPE" "DEL PEAK 36(17Q24.3) WILD-TYPE" 
                    TCGA-CG-4460                     TCGA-CG-4462 
"DEL PEAK 36(17Q24.3) WILD-TYPE" "DEL PEAK 36(17Q24.3) WILD-TYPE" 
                    TCGA-CG-4465                     TCGA-CG-4466 
"DEL PEAK 36(17Q24.3) WILD-TYPE" "DEL PEAK 36(17Q24.3) WILD-TYPE" 
                    TCGA-CG-4469                     TCGA-CG-4472 
  "DEL PEAK 36(17Q24.3) MUTATED" "DEL PEAK 36(17Q24.3) WILD-TYPE" 
                    TCGA-CG-4474                     TCGA-CG-4477 
  "DEL PEAK 36(17Q24.3) MUTATED" "DEL PEAK 36(17Q24.3) WILD-TYPE" 
                    TCGA-CG-5716                     TCGA-CG-5717 
"DEL PEAK 36(17Q24.3) WILD-TYPE" "DEL PEAK 36(17Q24.3) WILD-TYPE" 
                    TCGA-CG-5718                     TCGA-CG-5719 
"DEL PEAK 36(17Q24.3) WILD-TYPE" "DEL PEAK 36(17Q24.3) WILD-TYPE" 
                    TCGA-CG-5720                     TCGA-CG-5721 
"DEL PEAK 36(17Q24.3) WILD-TYPE" "DEL PEAK 36(17Q24.3) WILD-TYPE" 
                    TCGA-CG-5722                     TCGA-CG-5723 
"DEL PEAK 36(17Q24.3) WILD-TYPE" "DEL PEAK 36(17Q24.3) WILD-TYPE" 
                    TCGA-CG-5724                     TCGA-CG-5725 
"DEL PEAK 36(17Q24.3) WILD-TYPE" "DEL PEAK 36(17Q24.3) WILD-TYPE" 
                    TCGA-CG-5726                     TCGA-CG-5727 
"DEL PEAK 36(17Q24.3) WILD-TYPE" "DEL PEAK 36(17Q24.3) WILD-TYPE" 
                    TCGA-CG-5728                     TCGA-CG-5730 
"DEL PEAK 36(17Q24.3) WILD-TYPE"   "DEL PEAK 36(17Q24.3) MUTATED" 
                    TCGA-CG-5732                     TCGA-CG-5733 
"DEL PEAK 36(17Q24.3) WILD-TYPE" "DEL PEAK 36(17Q24.3) WILD-TYPE" 
                    TCGA-CG-5734                     TCGA-D7-5577 
"DEL PEAK 36(17Q24.3) WILD-TYPE" "DEL PEAK 36(17Q24.3) WILD-TYPE" 
                    TCGA-D7-5578                     TCGA-D7-5579 
"DEL PEAK 36(17Q24.3) WILD-TYPE"   "DEL PEAK 36(17Q24.3) MUTATED" 
                    TCGA-D7-6518                     TCGA-D7-6519 
"DEL PEAK 36(17Q24.3) WILD-TYPE" "DEL PEAK 36(17Q24.3) WILD-TYPE" 
                    TCGA-D7-6520                     TCGA-D7-6521 
"DEL PEAK 36(17Q24.3) WILD-TYPE" "DEL PEAK 36(17Q24.3) WILD-TYPE" 
                    TCGA-D7-6522                     TCGA-D7-6524 
"DEL PEAK 36(17Q24.3) WILD-TYPE" "DEL PEAK 36(17Q24.3) WILD-TYPE" 
                    TCGA-D7-6525                     TCGA-D7-6526 
"DEL PEAK 36(17Q24.3) WILD-TYPE"   "DEL PEAK 36(17Q24.3) MUTATED" 
                    TCGA-D7-6527                     TCGA-D7-6528 
"DEL PEAK 36(17Q24.3) WILD-TYPE"   "DEL PEAK 36(17Q24.3) MUTATED" 
                    TCGA-D7-6815                     TCGA-D7-6817 
"DEL PEAK 36(17Q24.3) WILD-TYPE" "DEL PEAK 36(17Q24.3) WILD-TYPE" 
                    TCGA-D7-6818                     TCGA-D7-6820 
"DEL PEAK 36(17Q24.3) WILD-TYPE"   "DEL PEAK 36(17Q24.3) MUTATED" 
                    TCGA-D7-6822                     TCGA-EQ-5647 
  "DEL PEAK 36(17Q24.3) MUTATED" "DEL PEAK 36(17Q24.3) WILD-TYPE" 
                    TCGA-EQ-8122                     TCGA-F1-6177 
"DEL PEAK 36(17Q24.3) WILD-TYPE" "DEL PEAK 36(17Q24.3) WILD-TYPE" 
                    TCGA-F1-6874                     TCGA-F1-6875 
"DEL PEAK 36(17Q24.3) WILD-TYPE" "DEL PEAK 36(17Q24.3) WILD-TYPE" 
                    TCGA-FP-7735                     TCGA-FP-7829 
"DEL PEAK 36(17Q24.3) WILD-TYPE" "DEL PEAK 36(17Q24.3) WILD-TYPE" 
                    TCGA-FP-7916                     TCGA-FP-7998 
"DEL PEAK 36(17Q24.3) WILD-TYPE" "DEL PEAK 36(17Q24.3) WILD-TYPE" 
                    TCGA-HJ-7597                     TCGA-IN-7806 
"DEL PEAK 36(17Q24.3) WILD-TYPE" "DEL PEAK 36(17Q24.3) WILD-TYPE" 
                    TCGA-IN-7808                     TCGA-IP-7968 
"DEL PEAK 36(17Q24.3) WILD-TYPE" "DEL PEAK 36(17Q24.3) WILD-TYPE" 
                    TCGA-B7-5816                     TCGA-B7-5818 
"DEL PEAK 36(17Q24.3) WILD-TYPE" "DEL PEAK 36(17Q24.3) WILD-TYPE" 
                    TCGA-BR-6452                     TCGA-BR-6455 
"DEL PEAK 36(17Q24.3) WILD-TYPE" "DEL PEAK 36(17Q24.3) WILD-TYPE" 
                    TCGA-BR-6457                     TCGA-BR-6458 
"DEL PEAK 36(17Q24.3) WILD-TYPE"   "DEL PEAK 36(17Q24.3) MUTATED" 
                    TCGA-BR-6563                     TCGA-BR-6564 
"DEL PEAK 36(17Q24.3) WILD-TYPE" "DEL PEAK 36(17Q24.3) WILD-TYPE" 
                    TCGA-BR-6565                     TCGA-BR-6566 
  "DEL PEAK 36(17Q24.3) MUTATED" "DEL PEAK 36(17Q24.3) WILD-TYPE" 
                    TCGA-BR-6705                     TCGA-BR-6706 
"DEL PEAK 36(17Q24.3) WILD-TYPE" "DEL PEAK 36(17Q24.3) WILD-TYPE" 
                    TCGA-BR-6707                     TCGA-BR-6709 
"DEL PEAK 36(17Q24.3) WILD-TYPE" "DEL PEAK 36(17Q24.3) WILD-TYPE" 
                    TCGA-BR-6710                     TCGA-BR-6801 
"DEL PEAK 36(17Q24.3) WILD-TYPE" "DEL PEAK 36(17Q24.3) WILD-TYPE" 
                    TCGA-BR-6802                     TCGA-BR-6803 
"DEL PEAK 36(17Q24.3) WILD-TYPE" "DEL PEAK 36(17Q24.3) WILD-TYPE" 
                    TCGA-BR-6852                     TCGA-BR-7196 
"DEL PEAK 36(17Q24.3) WILD-TYPE" "DEL PEAK 36(17Q24.3) WILD-TYPE" 
                    TCGA-BR-7197                     TCGA-BR-7703 
"DEL PEAK 36(17Q24.3) WILD-TYPE" "DEL PEAK 36(17Q24.3) WILD-TYPE" 
                    TCGA-BR-7704                     TCGA-BR-7707 
"DEL PEAK 36(17Q24.3) WILD-TYPE" "DEL PEAK 36(17Q24.3) WILD-TYPE" 
                    TCGA-BR-7715                     TCGA-BR-7716 
  "DEL PEAK 36(17Q24.3) MUTATED" "DEL PEAK 36(17Q24.3) WILD-TYPE" 
                    TCGA-BR-7717                     TCGA-BR-7722 
"DEL PEAK 36(17Q24.3) WILD-TYPE" "DEL PEAK 36(17Q24.3) WILD-TYPE" 
                    TCGA-BR-7723                     TCGA-BR-7851 
  "DEL PEAK 36(17Q24.3) MUTATED" "DEL PEAK 36(17Q24.3) WILD-TYPE" 
                    TCGA-BR-7901                     TCGA-BR-7957 
"DEL PEAK 36(17Q24.3) WILD-TYPE" "DEL PEAK 36(17Q24.3) WILD-TYPE" 
                    TCGA-BR-7958                     TCGA-BR-7959 
"DEL PEAK 36(17Q24.3) WILD-TYPE" "DEL PEAK 36(17Q24.3) WILD-TYPE" 
                    TCGA-BR-8059                     TCGA-BR-8060 
"DEL PEAK 36(17Q24.3) WILD-TYPE" "DEL PEAK 36(17Q24.3) WILD-TYPE" 
                    TCGA-BR-8077                     TCGA-BR-8078 
"DEL PEAK 36(17Q24.3) WILD-TYPE" "DEL PEAK 36(17Q24.3) WILD-TYPE" 
                    TCGA-BR-8080                     TCGA-BR-8081 
"DEL PEAK 36(17Q24.3) WILD-TYPE" "DEL PEAK 36(17Q24.3) WILD-TYPE" 
                    TCGA-BR-8284                     TCGA-BR-8285 
"DEL PEAK 36(17Q24.3) WILD-TYPE" "DEL PEAK 36(17Q24.3) WILD-TYPE" 
                    TCGA-BR-8286                     TCGA-BR-8289 
"DEL PEAK 36(17Q24.3) WILD-TYPE" "DEL PEAK 36(17Q24.3) WILD-TYPE" 
                    TCGA-BR-8291                     TCGA-BR-8295 
"DEL PEAK 36(17Q24.3) WILD-TYPE" "DEL PEAK 36(17Q24.3) WILD-TYPE" 
                    TCGA-BR-8296                     TCGA-BR-8297 
"DEL PEAK 36(17Q24.3) WILD-TYPE" "DEL PEAK 36(17Q24.3) WILD-TYPE" 
                    TCGA-CD-5798                     TCGA-CD-5799 
"DEL PEAK 36(17Q24.3) WILD-TYPE" "DEL PEAK 36(17Q24.3) WILD-TYPE" 
                    TCGA-CD-5800                     TCGA-CD-5801 
"DEL PEAK 36(17Q24.3) WILD-TYPE" "DEL PEAK 36(17Q24.3) WILD-TYPE" 
                    TCGA-CD-5802                     TCGA-CD-5803 
"DEL PEAK 36(17Q24.3) WILD-TYPE" "DEL PEAK 36(17Q24.3) WILD-TYPE" 
                    TCGA-CG-4300                     TCGA-CG-4301 
  "DEL PEAK 36(17Q24.3) MUTATED" "DEL PEAK 36(17Q24.3) WILD-TYPE" 
                    TCGA-CG-4304                     TCGA-CG-4305 
"DEL PEAK 36(17Q24.3) WILD-TYPE" "DEL PEAK 36(17Q24.3) WILD-TYPE" 
                    TCGA-CG-4306                     TCGA-CG-4436 
"DEL PEAK 36(17Q24.3) WILD-TYPE" "DEL PEAK 36(17Q24.3) WILD-TYPE" 
                    TCGA-CG-4437                     TCGA-CG-4438 
"DEL PEAK 36(17Q24.3) WILD-TYPE"   "DEL PEAK 36(17Q24.3) MUTATED" 
                    TCGA-CG-4440                     TCGA-CG-4441 
  "DEL PEAK 36(17Q24.3) MUTATED"   "DEL PEAK 36(17Q24.3) MUTATED" 
                    TCGA-CG-4443                     TCGA-CG-4444 
"DEL PEAK 36(17Q24.3) WILD-TYPE"   "DEL PEAK 36(17Q24.3) MUTATED" 
                    TCGA-CG-4449                     TCGA-CG-4455 
"DEL PEAK 36(17Q24.3) WILD-TYPE" "DEL PEAK 36(17Q24.3) WILD-TYPE" 
                    TCGA-CG-4460                     TCGA-CG-4462 
"DEL PEAK 36(17Q24.3) WILD-TYPE" "DEL PEAK 36(17Q24.3) WILD-TYPE" 
                    TCGA-CG-4465                     TCGA-CG-4466 
"DEL PEAK 36(17Q24.3) WILD-TYPE" "DEL PEAK 36(17Q24.3) WILD-TYPE" 
                    TCGA-CG-4469                     TCGA-CG-4472 
  "DEL PEAK 36(17Q24.3) MUTATED" "DEL PEAK 36(17Q24.3) WILD-TYPE" 
                    TCGA-CG-4474                     TCGA-CG-4477 
  "DEL PEAK 36(17Q24.3) MUTATED" "DEL PEAK 36(17Q24.3) WILD-TYPE" 
                    TCGA-CG-5716                     TCGA-CG-5717 
"DEL PEAK 36(17Q24.3) WILD-TYPE" "DEL PEAK 36(17Q24.3) WILD-TYPE" 
                    TCGA-CG-5718                     TCGA-CG-5719 
"DEL PEAK 36(17Q24.3) WILD-TYPE" "DEL PEAK 36(17Q24.3) WILD-TYPE" 
                    TCGA-CG-5720                     TCGA-CG-5721 
"DEL PEAK 36(17Q24.3) WILD-TYPE" "DEL PEAK 36(17Q24.3) WILD-TYPE" 
                    TCGA-CG-5722                     TCGA-CG-5723 
"DEL PEAK 36(17Q24.3) WILD-TYPE" "DEL PEAK 36(17Q24.3) WILD-TYPE" 
                    TCGA-CG-5724                     TCGA-CG-5725 
"DEL PEAK 36(17Q24.3) WILD-TYPE" "DEL PEAK 36(17Q24.3) WILD-TYPE" 
                    TCGA-CG-5726                     TCGA-CG-5727 
"DEL PEAK 36(17Q24.3) WILD-TYPE" "DEL PEAK 36(17Q24.3) WILD-TYPE" 
                    TCGA-CG-5728                     TCGA-CG-5730 
"DEL PEAK 36(17Q24.3) WILD-TYPE"   "DEL PEAK 36(17Q24.3) MUTATED" 
                    TCGA-CG-5732                     TCGA-CG-5733 
"DEL PEAK 36(17Q24.3) WILD-TYPE" "DEL PEAK 36(17Q24.3) WILD-TYPE" 
                    TCGA-CG-5734                     TCGA-D7-5577 
"DEL PEAK 36(17Q24.3) WILD-TYPE" "DEL PEAK 36(17Q24.3) WILD-TYPE" 
                    TCGA-D7-5578                     TCGA-D7-5579 
"DEL PEAK 36(17Q24.3) WILD-TYPE"   "DEL PEAK 36(17Q24.3) MUTATED" 
                    TCGA-D7-6518                     TCGA-D7-6519 
"DEL PEAK 36(17Q24.3) WILD-TYPE" "DEL PEAK 36(17Q24.3) WILD-TYPE" 
                    TCGA-D7-6520                     TCGA-D7-6521 
"DEL PEAK 36(17Q24.3) WILD-TYPE" "DEL PEAK 36(17Q24.3) WILD-TYPE" 
                    TCGA-D7-6522                     TCGA-D7-6524 
"DEL PEAK 36(17Q24.3) WILD-TYPE" "DEL PEAK 36(17Q24.3) WILD-TYPE" 
                    TCGA-D7-6525                     TCGA-D7-6526 
"DEL PEAK 36(17Q24.3) WILD-TYPE"   "DEL PEAK 36(17Q24.3) MUTATED" 
                    TCGA-D7-6527                     TCGA-D7-6528 
"DEL PEAK 36(17Q24.3) WILD-TYPE"   "DEL PEAK 36(17Q24.3) MUTATED" 
                    TCGA-D7-6815                     TCGA-D7-6817 
"DEL PEAK 36(17Q24.3) WILD-TYPE" "DEL PEAK 36(17Q24.3) WILD-TYPE" 
                    TCGA-D7-6818                     TCGA-D7-6820 
"DEL PEAK 36(17Q24.3) WILD-TYPE"   "DEL PEAK 36(17Q24.3) MUTATED" 
                    TCGA-D7-6822                     TCGA-EQ-5647 
  "DEL PEAK 36(17Q24.3) MUTATED" "DEL PEAK 36(17Q24.3) WILD-TYPE" 
                    TCGA-EQ-8122                     TCGA-F1-6177 
"DEL PEAK 36(17Q24.3) WILD-TYPE" "DEL PEAK 36(17Q24.3) WILD-TYPE" 
                    TCGA-F1-6874                     TCGA-F1-6875 
"DEL PEAK 36(17Q24.3) WILD-TYPE" "DEL PEAK 36(17Q24.3) WILD-TYPE" 
                    TCGA-FP-7735                     TCGA-FP-7829 
"DEL PEAK 36(17Q24.3) WILD-TYPE" "DEL PEAK 36(17Q24.3) WILD-TYPE" 
                    TCGA-FP-7916                     TCGA-FP-7998 
"DEL PEAK 36(17Q24.3) WILD-TYPE" "DEL PEAK 36(17Q24.3) WILD-TYPE" 
                    TCGA-HJ-7597                     TCGA-IN-7806 
"DEL PEAK 36(17Q24.3) WILD-TYPE" "DEL PEAK 36(17Q24.3) WILD-TYPE" 
                    TCGA-IN-7808                     TCGA-IP-7968 
"DEL PEAK 36(17Q24.3) WILD-TYPE" "DEL PEAK 36(17Q24.3) WILD-TYPE" 
                    TCGA-B7-5816                     TCGA-B7-5818 
"DEL PEAK 36(17Q24.3) WILD-TYPE" "DEL PEAK 36(17Q24.3) WILD-TYPE" 
                    TCGA-BR-6452                     TCGA-BR-6455 
"DEL PEAK 36(17Q24.3) WILD-TYPE" "DEL PEAK 36(17Q24.3) WILD-TYPE" 
                    TCGA-BR-6457                     TCGA-BR-6458 
"DEL PEAK 36(17Q24.3) WILD-TYPE"   "DEL PEAK 36(17Q24.3) MUTATED" 
                    TCGA-BR-6563                     TCGA-BR-6564 
"DEL PEAK 36(17Q24.3) WILD-TYPE" "DEL PEAK 36(17Q24.3) WILD-TYPE" 
                    TCGA-BR-6565                     TCGA-BR-6566 
  "DEL PEAK 36(17Q24.3) MUTATED" "DEL PEAK 36(17Q24.3) WILD-TYPE" 
                    TCGA-BR-6705                     TCGA-BR-6706 
"DEL PEAK 36(17Q24.3) WILD-TYPE" "DEL PEAK 36(17Q24.3) WILD-TYPE" 
                    TCGA-BR-6707                     TCGA-BR-6709 
"DEL PEAK 36(17Q24.3) WILD-TYPE" "DEL PEAK 36(17Q24.3) WILD-TYPE" 
                    TCGA-BR-6710                     TCGA-BR-6801 
"DEL PEAK 36(17Q24.3) WILD-TYPE" "DEL PEAK 36(17Q24.3) WILD-TYPE" 
                    TCGA-BR-6802                     TCGA-BR-6803 
"DEL PEAK 36(17Q24.3) WILD-TYPE" "DEL PEAK 36(17Q24.3) WILD-TYPE" 
                    TCGA-BR-6852                     TCGA-BR-7196 
"DEL PEAK 36(17Q24.3) WILD-TYPE" "DEL PEAK 36(17Q24.3) WILD-TYPE" 
                    TCGA-BR-7197                     TCGA-BR-7703 
"DEL PEAK 36(17Q24.3) WILD-TYPE" "DEL PEAK 36(17Q24.3) WILD-TYPE" 
                    TCGA-BR-7704                     TCGA-BR-7707 
"DEL PEAK 36(17Q24.3) WILD-TYPE" "DEL PEAK 36(17Q24.3) WILD-TYPE" 
                    TCGA-BR-7715                     TCGA-BR-7716 
  "DEL PEAK 36(17Q24.3) MUTATED" "DEL PEAK 36(17Q24.3) WILD-TYPE" 
                    TCGA-BR-7717                     TCGA-BR-7722 
"DEL PEAK 36(17Q24.3) WILD-TYPE" "DEL PEAK 36(17Q24.3) WILD-TYPE" 
                    TCGA-BR-7723                     TCGA-BR-7851 
  "DEL PEAK 36(17Q24.3) MUTATED" "DEL PEAK 36(17Q24.3) WILD-TYPE" 
                    TCGA-BR-7901                     TCGA-BR-7957 
"DEL PEAK 36(17Q24.3) WILD-TYPE" "DEL PEAK 36(17Q24.3) WILD-TYPE" 
                    TCGA-BR-7958                     TCGA-BR-7959 
"DEL PEAK 36(17Q24.3) WILD-TYPE" "DEL PEAK 36(17Q24.3) WILD-TYPE" 
                    TCGA-BR-8059                     TCGA-BR-8060 
"DEL PEAK 36(17Q24.3) WILD-TYPE" "DEL PEAK 36(17Q24.3) WILD-TYPE" 
                    TCGA-BR-8077                     TCGA-BR-8078 
"DEL PEAK 36(17Q24.3) WILD-TYPE" "DEL PEAK 36(17Q24.3) WILD-TYPE" 
                    TCGA-BR-8080                     TCGA-BR-8081 
"DEL PEAK 36(17Q24.3) WILD-TYPE" "DEL PEAK 36(17Q24.3) WILD-TYPE" 
                    TCGA-BR-8284                     TCGA-BR-8285 
"DEL PEAK 36(17Q24.3) WILD-TYPE" "DEL PEAK 36(17Q24.3) WILD-TYPE" 
                    TCGA-BR-8286                     TCGA-BR-8289 
"DEL PEAK 36(17Q24.3) WILD-TYPE" "DEL PEAK 36(17Q24.3) WILD-TYPE" 
                    TCGA-BR-8291                     TCGA-BR-8295 
"DEL PEAK 36(17Q24.3) WILD-TYPE" "DEL PEAK 36(17Q24.3) WILD-TYPE" 
                    TCGA-BR-8296                     TCGA-BR-8297 
"DEL PEAK 36(17Q24.3) WILD-TYPE" "DEL PEAK 36(17Q24.3) WILD-TYPE" 
                    TCGA-CD-5798                     TCGA-CD-5799 
"DEL PEAK 36(17Q24.3) WILD-TYPE" "DEL PEAK 36(17Q24.3) WILD-TYPE" 
                    TCGA-CD-5800                     TCGA-CD-5801 
"DEL PEAK 36(17Q24.3) WILD-TYPE" "DEL PEAK 36(17Q24.3) WILD-TYPE" 
                    TCGA-CD-5802                     TCGA-CD-5803 
"DEL PEAK 36(17Q24.3) WILD-TYPE" "DEL PEAK 36(17Q24.3) WILD-TYPE" 
                    TCGA-CG-4300                     TCGA-CG-4301 
  "DEL PEAK 36(17Q24.3) MUTATED" "DEL PEAK 36(17Q24.3) WILD-TYPE" 
                    TCGA-CG-4304                     TCGA-CG-4305 
"DEL PEAK 36(17Q24.3) WILD-TYPE" "DEL PEAK 36(17Q24.3) WILD-TYPE" 
                    TCGA-CG-4306                     TCGA-CG-4436 
"DEL PEAK 36(17Q24.3) WILD-TYPE" "DEL PEAK 36(17Q24.3) WILD-TYPE" 
                    TCGA-CG-4437                     TCGA-CG-4438 
"DEL PEAK 36(17Q24.3) WILD-TYPE"   "DEL PEAK 36(17Q24.3) MUTATED" 
                    TCGA-CG-4440                     TCGA-CG-4441 
  "DEL PEAK 36(17Q24.3) MUTATED"   "DEL PEAK 36(17Q24.3) MUTATED" 
                    TCGA-CG-4443                     TCGA-CG-4444 
"DEL PEAK 36(17Q24.3) WILD-TYPE"   "DEL PEAK 36(17Q24.3) MUTATED" 
                    TCGA-CG-4449                     TCGA-CG-4455 
"DEL PEAK 36(17Q24.3) WILD-TYPE" "DEL PEAK 36(17Q24.3) WILD-TYPE" 
                    TCGA-CG-4460                     TCGA-CG-4462 
"DEL PEAK 36(17Q24.3) WILD-TYPE" "DEL PEAK 36(17Q24.3) WILD-TYPE" 
                    TCGA-CG-4465                     TCGA-CG-4466 
"DEL PEAK 36(17Q24.3) WILD-TYPE" "DEL PEAK 36(17Q24.3) WILD-TYPE" 
                    TCGA-CG-4469                     TCGA-CG-4472 
  "DEL PEAK 36(17Q24.3) MUTATED" "DEL PEAK 36(17Q24.3) WILD-TYPE" 
                    TCGA-CG-4474                     TCGA-CG-4477 
  "DEL PEAK 36(17Q24.3) MUTATED" "DEL PEAK 36(17Q24.3) WILD-TYPE" 
                    TCGA-CG-5716                     TCGA-CG-5717 
"DEL PEAK 36(17Q24.3) WILD-TYPE" "DEL PEAK 36(17Q24.3) WILD-TYPE" 
                    TCGA-CG-5718                     TCGA-CG-5719 
"DEL PEAK 36(17Q24.3) WILD-TYPE" "DEL PEAK 36(17Q24.3) WILD-TYPE" 
                    TCGA-CG-5720                     TCGA-CG-5721 
"DEL PEAK 36(17Q24.3) WILD-TYPE" "DEL PEAK 36(17Q24.3) WILD-TYPE" 
                    TCGA-CG-5722                     TCGA-CG-5723 
"DEL PEAK 36(17Q24.3) WILD-TYPE" "DEL PEAK 36(17Q24.3) WILD-TYPE" 
                    TCGA-CG-5724                     TCGA-CG-5725 
"DEL PEAK 36(17Q24.3) WILD-TYPE" "DEL PEAK 36(17Q24.3) WILD-TYPE" 
                    TCGA-CG-5726                     TCGA-CG-5727 
"DEL PEAK 36(17Q24.3) WILD-TYPE" "DEL PEAK 36(17Q24.3) WILD-TYPE" 
                    TCGA-CG-5728                     TCGA-CG-5730 
"DEL PEAK 36(17Q24.3) WILD-TYPE"   "DEL PEAK 36(17Q24.3) MUTATED" 
                    TCGA-CG-5732                     TCGA-CG-5733 
"DEL PEAK 36(17Q24.3) WILD-TYPE" "DEL PEAK 36(17Q24.3) WILD-TYPE" 
                    TCGA-CG-5734                     TCGA-D7-5577 
"DEL PEAK 36(17Q24.3) WILD-TYPE" "DEL PEAK 36(17Q24.3) WILD-TYPE" 
                    TCGA-D7-5578                     TCGA-D7-5579 
"DEL PEAK 36(17Q24.3) WILD-TYPE"   "DEL PEAK 36(17Q24.3) MUTATED" 
                    TCGA-D7-6518                     TCGA-D7-6519 
"DEL PEAK 36(17Q24.3) WILD-TYPE" "DEL PEAK 36(17Q24.3) WILD-TYPE" 
                    TCGA-D7-6520                     TCGA-D7-6521 
"DEL PEAK 36(17Q24.3) WILD-TYPE" "DEL PEAK 36(17Q24.3) WILD-TYPE" 
                    TCGA-D7-6522                     TCGA-D7-6524 
"DEL PEAK 36(17Q24.3) WILD-TYPE" "DEL PEAK 36(17Q24.3) WILD-TYPE" 
                    TCGA-D7-6525                     TCGA-D7-6526 
"DEL PEAK 36(17Q24.3) WILD-TYPE"   "DEL PEAK 36(17Q24.3) MUTATED" 
                    TCGA-D7-6527                     TCGA-D7-6528 
"DEL PEAK 36(17Q24.3) WILD-TYPE"   "DEL PEAK 36(17Q24.3) MUTATED" 
                    TCGA-D7-6815                     TCGA-D7-6817 
"DEL PEAK 36(17Q24.3) WILD-TYPE" "DEL PEAK 36(17Q24.3) WILD-TYPE" 
                    TCGA-D7-6818                     TCGA-D7-6820 
"DEL PEAK 36(17Q24.3) WILD-TYPE"   "DEL PEAK 36(17Q24.3) MUTATED" 
                    TCGA-D7-6822                     TCGA-EQ-5647 
  "DEL PEAK 36(17Q24.3) MUTATED" "DEL PEAK 36(17Q24.3) WILD-TYPE" 
                    TCGA-EQ-8122                     TCGA-F1-6177 
"DEL PEAK 36(17Q24.3) WILD-TYPE" "DEL PEAK 36(17Q24.3) WILD-TYPE" 
                    TCGA-F1-6874                     TCGA-F1-6875 
"DEL PEAK 36(17Q24.3) WILD-TYPE" "DEL PEAK 36(17Q24.3) WILD-TYPE" 
                    TCGA-FP-7735                     TCGA-FP-7829 
"DEL PEAK 36(17Q24.3) WILD-TYPE" "DEL PEAK 36(17Q24.3) WILD-TYPE" 
                    TCGA-FP-7916                     TCGA-FP-7998 
"DEL PEAK 36(17Q24.3) WILD-TYPE" "DEL PEAK 36(17Q24.3) WILD-TYPE" 
                    TCGA-HJ-7597                     TCGA-IN-7806 
"DEL PEAK 36(17Q24.3) WILD-TYPE" "DEL PEAK 36(17Q24.3) WILD-TYPE" 
                    TCGA-IN-7808                     TCGA-IP-7968 
"DEL PEAK 36(17Q24.3) WILD-TYPE" "DEL PEAK 36(17Q24.3) WILD-TYPE" 
[1] "hr=" "1.2"
D62V2, continuous
D62V3, binary
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  DEL PEAK 36(17Q24.3) MUTATED      8   15
  DEL PEAK 36(17Q24.3) WILD-TYPE   57   81
        clus
vv       DEL PEAK 36(17Q24.3) MUTATED DEL PEAK 36(17Q24.3) WILD-TYPE
  FEMALE                            8                             57
  MALE                             15                             81
D62V4, multiclass
D62V5, multiclass
    clus
vv   DEL PEAK 36(17Q24.3) MUTATED DEL PEAK 36(17Q24.3) WILD-TYPE
  T1                            0                              6
  T2                            7                             46
  T3                            9                             50
  T4                            3                             30
D62V6, multiclass
    clus
vv   DEL PEAK 36(17Q24.3) MUTATED DEL PEAK 36(17Q24.3) WILD-TYPE
  N0                            5                             45
  N1                            4                             53
  N2                            8                             16
  N3                            2                             17
D62V7, multiclass
    clus
vv   DEL PEAK 36(17Q24.3) MUTATED DEL PEAK 36(17Q24.3) WILD-TYPE
  M0                           20                            112
  M1                            3                             15
  MX                            0                             11
D62V8, multiclass
     clus
vv    DEL PEAK 36(17Q24.3) MUTATED DEL PEAK 36(17Q24.3) WILD-TYPE
  I                              2                             23
  II                             6                             37
  III                            5                             43
  IV                             5                             24
D62V9, binary
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  DEL PEAK 36(17Q24.3) MUTATED     23    0
  DEL PEAK 36(17Q24.3) WILD-TYPE  133    5
     clus
vv    DEL PEAK 36(17Q24.3) MUTATED DEL PEAK 36(17Q24.3) WILD-TYPE
  NO                             0                              5
  YES                           23                            133

Clustering(63) Variable = Del Peak 37(18q21.2) mutation analysis
D63V1, survival
                    TCGA-B7-5816                     TCGA-B7-5818 
"DEL PEAK 37(18Q21.2) WILD-TYPE"   "DEL PEAK 37(18Q21.2) MUTATED" 
                    TCGA-BR-6452                     TCGA-BR-6455 
"DEL PEAK 37(18Q21.2) WILD-TYPE" "DEL PEAK 37(18Q21.2) WILD-TYPE" 
                    TCGA-BR-6457                     TCGA-BR-6458 
"DEL PEAK 37(18Q21.2) WILD-TYPE"   "DEL PEAK 37(18Q21.2) MUTATED" 
                    TCGA-BR-6563                     TCGA-BR-6564 
"DEL PEAK 37(18Q21.2) WILD-TYPE"   "DEL PEAK 37(18Q21.2) MUTATED" 
                    TCGA-BR-6565                     TCGA-BR-6566 
"DEL PEAK 37(18Q21.2) WILD-TYPE" "DEL PEAK 37(18Q21.2) WILD-TYPE" 
                    TCGA-BR-6705                     TCGA-BR-6706 
"DEL PEAK 37(18Q21.2) WILD-TYPE" "DEL PEAK 37(18Q21.2) WILD-TYPE" 
                    TCGA-BR-6707                     TCGA-BR-6709 
"DEL PEAK 37(18Q21.2) WILD-TYPE"   "DEL PEAK 37(18Q21.2) MUTATED" 
                    TCGA-BR-6710                     TCGA-BR-6801 
"DEL PEAK 37(18Q21.2) WILD-TYPE" "DEL PEAK 37(18Q21.2) WILD-TYPE" 
                    TCGA-BR-6802                     TCGA-BR-6803 
"DEL PEAK 37(18Q21.2) WILD-TYPE" "DEL PEAK 37(18Q21.2) WILD-TYPE" 
                    TCGA-BR-6852                     TCGA-BR-7196 
"DEL PEAK 37(18Q21.2) WILD-TYPE" "DEL PEAK 37(18Q21.2) WILD-TYPE" 
                    TCGA-BR-7197                     TCGA-BR-7703 
"DEL PEAK 37(18Q21.2) WILD-TYPE" "DEL PEAK 37(18Q21.2) WILD-TYPE" 
                    TCGA-BR-7704                     TCGA-BR-7707 
"DEL PEAK 37(18Q21.2) WILD-TYPE" "DEL PEAK 37(18Q21.2) WILD-TYPE" 
                    TCGA-BR-7715                     TCGA-BR-7716 
"DEL PEAK 37(18Q21.2) WILD-TYPE"   "DEL PEAK 37(18Q21.2) MUTATED" 
                    TCGA-BR-7717                     TCGA-BR-7722 
"DEL PEAK 37(18Q21.2) WILD-TYPE"   "DEL PEAK 37(18Q21.2) MUTATED" 
                    TCGA-BR-7723                     TCGA-BR-7851 
  "DEL PEAK 37(18Q21.2) MUTATED" "DEL PEAK 37(18Q21.2) WILD-TYPE" 
                    TCGA-BR-7901                     TCGA-BR-7957 
  "DEL PEAK 37(18Q21.2) MUTATED"   "DEL PEAK 37(18Q21.2) MUTATED" 
                    TCGA-BR-7958                     TCGA-BR-7959 
"DEL PEAK 37(18Q21.2) WILD-TYPE" "DEL PEAK 37(18Q21.2) WILD-TYPE" 
                    TCGA-BR-8059                     TCGA-BR-8060 
"DEL PEAK 37(18Q21.2) WILD-TYPE" "DEL PEAK 37(18Q21.2) WILD-TYPE" 
                    TCGA-BR-8077                     TCGA-BR-8078 
"DEL PEAK 37(18Q21.2) WILD-TYPE" "DEL PEAK 37(18Q21.2) WILD-TYPE" 
                    TCGA-BR-8080                     TCGA-BR-8081 
"DEL PEAK 37(18Q21.2) WILD-TYPE" "DEL PEAK 37(18Q21.2) WILD-TYPE" 
                    TCGA-BR-8284                     TCGA-BR-8285 
"DEL PEAK 37(18Q21.2) WILD-TYPE" "DEL PEAK 37(18Q21.2) WILD-TYPE" 
                    TCGA-BR-8286                     TCGA-BR-8289 
"DEL PEAK 37(18Q21.2) WILD-TYPE" "DEL PEAK 37(18Q21.2) WILD-TYPE" 
                    TCGA-BR-8291                     TCGA-BR-8295 
"DEL PEAK 37(18Q21.2) WILD-TYPE" "DEL PEAK 37(18Q21.2) WILD-TYPE" 
                    TCGA-BR-8296                     TCGA-BR-8297 
"DEL PEAK 37(18Q21.2) WILD-TYPE" "DEL PEAK 37(18Q21.2) WILD-TYPE" 
                    TCGA-CD-5798                     TCGA-CD-5799 
"DEL PEAK 37(18Q21.2) WILD-TYPE"   "DEL PEAK 37(18Q21.2) MUTATED" 
                    TCGA-CD-5800                     TCGA-CD-5801 
  "DEL PEAK 37(18Q21.2) MUTATED"   "DEL PEAK 37(18Q21.2) MUTATED" 
                    TCGA-CD-5802                     TCGA-CD-5803 
  "DEL PEAK 37(18Q21.2) MUTATED"   "DEL PEAK 37(18Q21.2) MUTATED" 
                    TCGA-CG-4300                     TCGA-CG-4301 
"DEL PEAK 37(18Q21.2) WILD-TYPE"   "DEL PEAK 37(18Q21.2) MUTATED" 
                    TCGA-CG-4304                     TCGA-CG-4305 
  "DEL PEAK 37(18Q21.2) MUTATED" "DEL PEAK 37(18Q21.2) WILD-TYPE" 
                    TCGA-CG-4306                     TCGA-CG-4436 
"DEL PEAK 37(18Q21.2) WILD-TYPE"   "DEL PEAK 37(18Q21.2) MUTATED" 
                    TCGA-CG-4437                     TCGA-CG-4438 
  "DEL PEAK 37(18Q21.2) MUTATED"   "DEL PEAK 37(18Q21.2) MUTATED" 
                    TCGA-CG-4440                     TCGA-CG-4441 
  "DEL PEAK 37(18Q21.2) MUTATED" "DEL PEAK 37(18Q21.2) WILD-TYPE" 
                    TCGA-CG-4443                     TCGA-CG-4444 
"DEL PEAK 37(18Q21.2) WILD-TYPE"   "DEL PEAK 37(18Q21.2) MUTATED" 
                    TCGA-CG-4449                     TCGA-CG-4455 
"DEL PEAK 37(18Q21.2) WILD-TYPE" "DEL PEAK 37(18Q21.2) WILD-TYPE" 
                    TCGA-CG-4460                     TCGA-CG-4462 
"DEL PEAK 37(18Q21.2) WILD-TYPE" "DEL PEAK 37(18Q21.2) WILD-TYPE" 
                    TCGA-CG-4465                     TCGA-CG-4466 
"DEL PEAK 37(18Q21.2) WILD-TYPE"   "DEL PEAK 37(18Q21.2) MUTATED" 
                    TCGA-CG-4469                     TCGA-CG-4472 
  "DEL PEAK 37(18Q21.2) MUTATED"   "DEL PEAK 37(18Q21.2) MUTATED" 
                    TCGA-CG-4474                     TCGA-CG-4477 
"DEL PEAK 37(18Q21.2) WILD-TYPE"   "DEL PEAK 37(18Q21.2) MUTATED" 
                    TCGA-CG-5716                     TCGA-CG-5717 
"DEL PEAK 37(18Q21.2) WILD-TYPE" "DEL PEAK 37(18Q21.2) WILD-TYPE" 
                    TCGA-CG-5718                     TCGA-CG-5719 
  "DEL PEAK 37(18Q21.2) MUTATED"   "DEL PEAK 37(18Q21.2) MUTATED" 
                    TCGA-CG-5720                     TCGA-CG-5721 
"DEL PEAK 37(18Q21.2) WILD-TYPE" "DEL PEAK 37(18Q21.2) WILD-TYPE" 
                    TCGA-CG-5722                     TCGA-CG-5723 
"DEL PEAK 37(18Q21.2) WILD-TYPE" "DEL PEAK 37(18Q21.2) WILD-TYPE" 
                    TCGA-CG-5724                     TCGA-CG-5725 
  "DEL PEAK 37(18Q21.2) MUTATED" "DEL PEAK 37(18Q21.2) WILD-TYPE" 
                    TCGA-CG-5726                     TCGA-CG-5727 
"DEL PEAK 37(18Q21.2) WILD-TYPE" "DEL PEAK 37(18Q21.2) WILD-TYPE" 
                    TCGA-CG-5728                     TCGA-CG-5730 
"DEL PEAK 37(18Q21.2) WILD-TYPE"   "DEL PEAK 37(18Q21.2) MUTATED" 
                    TCGA-CG-5732                     TCGA-CG-5733 
  "DEL PEAK 37(18Q21.2) MUTATED" "DEL PEAK 37(18Q21.2) WILD-TYPE" 
                    TCGA-CG-5734                     TCGA-D7-5577 
"DEL PEAK 37(18Q21.2) WILD-TYPE"   "DEL PEAK 37(18Q21.2) MUTATED" 
                    TCGA-D7-5578                     TCGA-D7-5579 
"DEL PEAK 37(18Q21.2) WILD-TYPE"   "DEL PEAK 37(18Q21.2) MUTATED" 
                    TCGA-D7-6518                     TCGA-D7-6519 
  "DEL PEAK 37(18Q21.2) MUTATED"   "DEL PEAK 37(18Q21.2) MUTATED" 
                    TCGA-D7-6520                     TCGA-D7-6521 
"DEL PEAK 37(18Q21.2) WILD-TYPE"   "DEL PEAK 37(18Q21.2) MUTATED" 
                    TCGA-D7-6522                     TCGA-D7-6524 
"DEL PEAK 37(18Q21.2) WILD-TYPE" "DEL PEAK 37(18Q21.2) WILD-TYPE" 
                    TCGA-D7-6525                     TCGA-D7-6526 
  "DEL PEAK 37(18Q21.2) MUTATED"   "DEL PEAK 37(18Q21.2) MUTATED" 
                    TCGA-D7-6527                     TCGA-D7-6528 
  "DEL PEAK 37(18Q21.2) MUTATED" "DEL PEAK 37(18Q21.2) WILD-TYPE" 
                    TCGA-D7-6815                     TCGA-D7-6817 
  "DEL PEAK 37(18Q21.2) MUTATED" "DEL PEAK 37(18Q21.2) WILD-TYPE" 
                    TCGA-D7-6818                     TCGA-D7-6820 
"DEL PEAK 37(18Q21.2) WILD-TYPE" "DEL PEAK 37(18Q21.2) WILD-TYPE" 
                    TCGA-D7-6822                     TCGA-EQ-5647 
  "DEL PEAK 37(18Q21.2) MUTATED"   "DEL PEAK 37(18Q21.2) MUTATED" 
                    TCGA-EQ-8122                     TCGA-F1-6177 
  "DEL PEAK 37(18Q21.2) MUTATED" "DEL PEAK 37(18Q21.2) WILD-TYPE" 
                    TCGA-F1-6874                     TCGA-F1-6875 
"DEL PEAK 37(18Q21.2) WILD-TYPE" "DEL PEAK 37(18Q21.2) WILD-TYPE" 
                    TCGA-FP-7735                     TCGA-FP-7829 
"DEL PEAK 37(18Q21.2) WILD-TYPE"   "DEL PEAK 37(18Q21.2) MUTATED" 
                    TCGA-FP-7916                     TCGA-FP-7998 
  "DEL PEAK 37(18Q21.2) MUTATED"   "DEL PEAK 37(18Q21.2) MUTATED" 
                    TCGA-HJ-7597                     TCGA-IN-7806 
"DEL PEAK 37(18Q21.2) WILD-TYPE" "DEL PEAK 37(18Q21.2) WILD-TYPE" 
                    TCGA-IN-7808                     TCGA-IP-7968 
  "DEL PEAK 37(18Q21.2) MUTATED"   "DEL PEAK 37(18Q21.2) MUTATED" 
                    TCGA-B7-5816                     TCGA-B7-5818 
"DEL PEAK 37(18Q21.2) WILD-TYPE"   "DEL PEAK 37(18Q21.2) MUTATED" 
                    TCGA-BR-6452                     TCGA-BR-6455 
"DEL PEAK 37(18Q21.2) WILD-TYPE" "DEL PEAK 37(18Q21.2) WILD-TYPE" 
                    TCGA-BR-6457                     TCGA-BR-6458 
"DEL PEAK 37(18Q21.2) WILD-TYPE"   "DEL PEAK 37(18Q21.2) MUTATED" 
                    TCGA-BR-6563                     TCGA-BR-6564 
"DEL PEAK 37(18Q21.2) WILD-TYPE"   "DEL PEAK 37(18Q21.2) MUTATED" 
                    TCGA-BR-6565                     TCGA-BR-6566 
"DEL PEAK 37(18Q21.2) WILD-TYPE" "DEL PEAK 37(18Q21.2) WILD-TYPE" 
                    TCGA-BR-6705                     TCGA-BR-6706 
"DEL PEAK 37(18Q21.2) WILD-TYPE" "DEL PEAK 37(18Q21.2) WILD-TYPE" 
                    TCGA-BR-6707                     TCGA-BR-6709 
"DEL PEAK 37(18Q21.2) WILD-TYPE"   "DEL PEAK 37(18Q21.2) MUTATED" 
                    TCGA-BR-6710                     TCGA-BR-6801 
"DEL PEAK 37(18Q21.2) WILD-TYPE" "DEL PEAK 37(18Q21.2) WILD-TYPE" 
                    TCGA-BR-6802                     TCGA-BR-6803 
"DEL PEAK 37(18Q21.2) WILD-TYPE" "DEL PEAK 37(18Q21.2) WILD-TYPE" 
                    TCGA-BR-6852                     TCGA-BR-7196 
"DEL PEAK 37(18Q21.2) WILD-TYPE" "DEL PEAK 37(18Q21.2) WILD-TYPE" 
                    TCGA-BR-7197                     TCGA-BR-7703 
"DEL PEAK 37(18Q21.2) WILD-TYPE" "DEL PEAK 37(18Q21.2) WILD-TYPE" 
                    TCGA-BR-7704                     TCGA-BR-7707 
"DEL PEAK 37(18Q21.2) WILD-TYPE" "DEL PEAK 37(18Q21.2) WILD-TYPE" 
                    TCGA-BR-7715                     TCGA-BR-7716 
"DEL PEAK 37(18Q21.2) WILD-TYPE"   "DEL PEAK 37(18Q21.2) MUTATED" 
                    TCGA-BR-7717                     TCGA-BR-7722 
"DEL PEAK 37(18Q21.2) WILD-TYPE"   "DEL PEAK 37(18Q21.2) MUTATED" 
                    TCGA-BR-7723                     TCGA-BR-7851 
  "DEL PEAK 37(18Q21.2) MUTATED" "DEL PEAK 37(18Q21.2) WILD-TYPE" 
                    TCGA-BR-7901                     TCGA-BR-7957 
  "DEL PEAK 37(18Q21.2) MUTATED"   "DEL PEAK 37(18Q21.2) MUTATED" 
                    TCGA-BR-7958                     TCGA-BR-7959 
"DEL PEAK 37(18Q21.2) WILD-TYPE" "DEL PEAK 37(18Q21.2) WILD-TYPE" 
                    TCGA-BR-8059                     TCGA-BR-8060 
"DEL PEAK 37(18Q21.2) WILD-TYPE" "DEL PEAK 37(18Q21.2) WILD-TYPE" 
                    TCGA-BR-8077                     TCGA-BR-8078 
"DEL PEAK 37(18Q21.2) WILD-TYPE" "DEL PEAK 37(18Q21.2) WILD-TYPE" 
                    TCGA-BR-8080                     TCGA-BR-8081 
"DEL PEAK 37(18Q21.2) WILD-TYPE" "DEL PEAK 37(18Q21.2) WILD-TYPE" 
                    TCGA-BR-8284                     TCGA-BR-8285 
"DEL PEAK 37(18Q21.2) WILD-TYPE" "DEL PEAK 37(18Q21.2) WILD-TYPE" 
                    TCGA-BR-8286                     TCGA-BR-8289 
"DEL PEAK 37(18Q21.2) WILD-TYPE" "DEL PEAK 37(18Q21.2) WILD-TYPE" 
                    TCGA-BR-8291                     TCGA-BR-8295 
"DEL PEAK 37(18Q21.2) WILD-TYPE" "DEL PEAK 37(18Q21.2) WILD-TYPE" 
                    TCGA-BR-8296                     TCGA-BR-8297 
"DEL PEAK 37(18Q21.2) WILD-TYPE" "DEL PEAK 37(18Q21.2) WILD-TYPE" 
                    TCGA-CD-5798                     TCGA-CD-5799 
"DEL PEAK 37(18Q21.2) WILD-TYPE"   "DEL PEAK 37(18Q21.2) MUTATED" 
                    TCGA-CD-5800                     TCGA-CD-5801 
  "DEL PEAK 37(18Q21.2) MUTATED"   "DEL PEAK 37(18Q21.2) MUTATED" 
                    TCGA-CD-5802                     TCGA-CD-5803 
  "DEL PEAK 37(18Q21.2) MUTATED"   "DEL PEAK 37(18Q21.2) MUTATED" 
                    TCGA-CG-4300                     TCGA-CG-4301 
"DEL PEAK 37(18Q21.2) WILD-TYPE"   "DEL PEAK 37(18Q21.2) MUTATED" 
                    TCGA-CG-4304                     TCGA-CG-4305 
  "DEL PEAK 37(18Q21.2) MUTATED" "DEL PEAK 37(18Q21.2) WILD-TYPE" 
                    TCGA-CG-4306                     TCGA-CG-4436 
"DEL PEAK 37(18Q21.2) WILD-TYPE"   "DEL PEAK 37(18Q21.2) MUTATED" 
                    TCGA-CG-4437                     TCGA-CG-4438 
  "DEL PEAK 37(18Q21.2) MUTATED"   "DEL PEAK 37(18Q21.2) MUTATED" 
                    TCGA-CG-4440                     TCGA-CG-4441 
  "DEL PEAK 37(18Q21.2) MUTATED" "DEL PEAK 37(18Q21.2) WILD-TYPE" 
                    TCGA-CG-4443                     TCGA-CG-4444 
"DEL PEAK 37(18Q21.2) WILD-TYPE"   "DEL PEAK 37(18Q21.2) MUTATED" 
                    TCGA-CG-4449                     TCGA-CG-4455 
"DEL PEAK 37(18Q21.2) WILD-TYPE" "DEL PEAK 37(18Q21.2) WILD-TYPE" 
                    TCGA-CG-4460                     TCGA-CG-4462 
"DEL PEAK 37(18Q21.2) WILD-TYPE" "DEL PEAK 37(18Q21.2) WILD-TYPE" 
                    TCGA-CG-4465                     TCGA-CG-4466 
"DEL PEAK 37(18Q21.2) WILD-TYPE"   "DEL PEAK 37(18Q21.2) MUTATED" 
                    TCGA-CG-4469                     TCGA-CG-4472 
  "DEL PEAK 37(18Q21.2) MUTATED"   "DEL PEAK 37(18Q21.2) MUTATED" 
                    TCGA-CG-4474                     TCGA-CG-4477 
"DEL PEAK 37(18Q21.2) WILD-TYPE"   "DEL PEAK 37(18Q21.2) MUTATED" 
                    TCGA-CG-5716                     TCGA-CG-5717 
"DEL PEAK 37(18Q21.2) WILD-TYPE" "DEL PEAK 37(18Q21.2) WILD-TYPE" 
                    TCGA-CG-5718                     TCGA-CG-5719 
  "DEL PEAK 37(18Q21.2) MUTATED"   "DEL PEAK 37(18Q21.2) MUTATED" 
                    TCGA-CG-5720                     TCGA-CG-5721 
"DEL PEAK 37(18Q21.2) WILD-TYPE" "DEL PEAK 37(18Q21.2) WILD-TYPE" 
                    TCGA-CG-5722                     TCGA-CG-5723 
"DEL PEAK 37(18Q21.2) WILD-TYPE" "DEL PEAK 37(18Q21.2) WILD-TYPE" 
                    TCGA-CG-5724                     TCGA-CG-5725 
  "DEL PEAK 37(18Q21.2) MUTATED" "DEL PEAK 37(18Q21.2) WILD-TYPE" 
                    TCGA-CG-5726                     TCGA-CG-5727 
"DEL PEAK 37(18Q21.2) WILD-TYPE" "DEL PEAK 37(18Q21.2) WILD-TYPE" 
                    TCGA-CG-5728                     TCGA-CG-5730 
"DEL PEAK 37(18Q21.2) WILD-TYPE"   "DEL PEAK 37(18Q21.2) MUTATED" 
                    TCGA-CG-5732                     TCGA-CG-5733 
  "DEL PEAK 37(18Q21.2) MUTATED" "DEL PEAK 37(18Q21.2) WILD-TYPE" 
                    TCGA-CG-5734                     TCGA-D7-5577 
"DEL PEAK 37(18Q21.2) WILD-TYPE"   "DEL PEAK 37(18Q21.2) MUTATED" 
                    TCGA-D7-5578                     TCGA-D7-5579 
"DEL PEAK 37(18Q21.2) WILD-TYPE"   "DEL PEAK 37(18Q21.2) MUTATED" 
                    TCGA-D7-6518                     TCGA-D7-6519 
  "DEL PEAK 37(18Q21.2) MUTATED"   "DEL PEAK 37(18Q21.2) MUTATED" 
                    TCGA-D7-6520                     TCGA-D7-6521 
"DEL PEAK 37(18Q21.2) WILD-TYPE"   "DEL PEAK 37(18Q21.2) MUTATED" 
                    TCGA-D7-6522                     TCGA-D7-6524 
"DEL PEAK 37(18Q21.2) WILD-TYPE" "DEL PEAK 37(18Q21.2) WILD-TYPE" 
                    TCGA-D7-6525                     TCGA-D7-6526 
  "DEL PEAK 37(18Q21.2) MUTATED"   "DEL PEAK 37(18Q21.2) MUTATED" 
                    TCGA-D7-6527                     TCGA-D7-6528 
  "DEL PEAK 37(18Q21.2) MUTATED" "DEL PEAK 37(18Q21.2) WILD-TYPE" 
                    TCGA-D7-6815                     TCGA-D7-6817 
  "DEL PEAK 37(18Q21.2) MUTATED" "DEL PEAK 37(18Q21.2) WILD-TYPE" 
                    TCGA-D7-6818                     TCGA-D7-6820 
"DEL PEAK 37(18Q21.2) WILD-TYPE" "DEL PEAK 37(18Q21.2) WILD-TYPE" 
                    TCGA-D7-6822                     TCGA-EQ-5647 
  "DEL PEAK 37(18Q21.2) MUTATED"   "DEL PEAK 37(18Q21.2) MUTATED" 
                    TCGA-EQ-8122                     TCGA-F1-6177 
  "DEL PEAK 37(18Q21.2) MUTATED" "DEL PEAK 37(18Q21.2) WILD-TYPE" 
                    TCGA-F1-6874                     TCGA-F1-6875 
"DEL PEAK 37(18Q21.2) WILD-TYPE" "DEL PEAK 37(18Q21.2) WILD-TYPE" 
                    TCGA-FP-7735                     TCGA-FP-7829 
"DEL PEAK 37(18Q21.2) WILD-TYPE"   "DEL PEAK 37(18Q21.2) MUTATED" 
                    TCGA-FP-7916                     TCGA-FP-7998 
  "DEL PEAK 37(18Q21.2) MUTATED"   "DEL PEAK 37(18Q21.2) MUTATED" 
                    TCGA-HJ-7597                     TCGA-IN-7806 
"DEL PEAK 37(18Q21.2) WILD-TYPE" "DEL PEAK 37(18Q21.2) WILD-TYPE" 
                    TCGA-IN-7808                     TCGA-IP-7968 
  "DEL PEAK 37(18Q21.2) MUTATED"   "DEL PEAK 37(18Q21.2) MUTATED" 
                    TCGA-B7-5816                     TCGA-B7-5818 
"DEL PEAK 37(18Q21.2) WILD-TYPE"   "DEL PEAK 37(18Q21.2) MUTATED" 
                    TCGA-BR-6452                     TCGA-BR-6455 
"DEL PEAK 37(18Q21.2) WILD-TYPE" "DEL PEAK 37(18Q21.2) WILD-TYPE" 
                    TCGA-BR-6457                     TCGA-BR-6458 
"DEL PEAK 37(18Q21.2) WILD-TYPE"   "DEL PEAK 37(18Q21.2) MUTATED" 
                    TCGA-BR-6563                     TCGA-BR-6564 
"DEL PEAK 37(18Q21.2) WILD-TYPE"   "DEL PEAK 37(18Q21.2) MUTATED" 
                    TCGA-BR-6565                     TCGA-BR-6566 
"DEL PEAK 37(18Q21.2) WILD-TYPE" "DEL PEAK 37(18Q21.2) WILD-TYPE" 
                    TCGA-BR-6705                     TCGA-BR-6706 
"DEL PEAK 37(18Q21.2) WILD-TYPE" "DEL PEAK 37(18Q21.2) WILD-TYPE" 
                    TCGA-BR-6707                     TCGA-BR-6709 
"DEL PEAK 37(18Q21.2) WILD-TYPE"   "DEL PEAK 37(18Q21.2) MUTATED" 
                    TCGA-BR-6710                     TCGA-BR-6801 
"DEL PEAK 37(18Q21.2) WILD-TYPE" "DEL PEAK 37(18Q21.2) WILD-TYPE" 
                    TCGA-BR-6802                     TCGA-BR-6803 
"DEL PEAK 37(18Q21.2) WILD-TYPE" "DEL PEAK 37(18Q21.2) WILD-TYPE" 
                    TCGA-BR-6852                     TCGA-BR-7196 
"DEL PEAK 37(18Q21.2) WILD-TYPE" "DEL PEAK 37(18Q21.2) WILD-TYPE" 
                    TCGA-BR-7197                     TCGA-BR-7703 
"DEL PEAK 37(18Q21.2) WILD-TYPE" "DEL PEAK 37(18Q21.2) WILD-TYPE" 
                    TCGA-BR-7704                     TCGA-BR-7707 
"DEL PEAK 37(18Q21.2) WILD-TYPE" "DEL PEAK 37(18Q21.2) WILD-TYPE" 
                    TCGA-BR-7715                     TCGA-BR-7716 
"DEL PEAK 37(18Q21.2) WILD-TYPE"   "DEL PEAK 37(18Q21.2) MUTATED" 
                    TCGA-BR-7717                     TCGA-BR-7722 
"DEL PEAK 37(18Q21.2) WILD-TYPE"   "DEL PEAK 37(18Q21.2) MUTATED" 
                    TCGA-BR-7723                     TCGA-BR-7851 
  "DEL PEAK 37(18Q21.2) MUTATED" "DEL PEAK 37(18Q21.2) WILD-TYPE" 
                    TCGA-BR-7901                     TCGA-BR-7957 
  "DEL PEAK 37(18Q21.2) MUTATED"   "DEL PEAK 37(18Q21.2) MUTATED" 
                    TCGA-BR-7958                     TCGA-BR-7959 
"DEL PEAK 37(18Q21.2) WILD-TYPE" "DEL PEAK 37(18Q21.2) WILD-TYPE" 
                    TCGA-BR-8059                     TCGA-BR-8060 
"DEL PEAK 37(18Q21.2) WILD-TYPE" "DEL PEAK 37(18Q21.2) WILD-TYPE" 
                    TCGA-BR-8077                     TCGA-BR-8078 
"DEL PEAK 37(18Q21.2) WILD-TYPE" "DEL PEAK 37(18Q21.2) WILD-TYPE" 
                    TCGA-BR-8080                     TCGA-BR-8081 
"DEL PEAK 37(18Q21.2) WILD-TYPE" "DEL PEAK 37(18Q21.2) WILD-TYPE" 
                    TCGA-BR-8284                     TCGA-BR-8285 
"DEL PEAK 37(18Q21.2) WILD-TYPE" "DEL PEAK 37(18Q21.2) WILD-TYPE" 
                    TCGA-BR-8286                     TCGA-BR-8289 
"DEL PEAK 37(18Q21.2) WILD-TYPE" "DEL PEAK 37(18Q21.2) WILD-TYPE" 
                    TCGA-BR-8291                     TCGA-BR-8295 
"DEL PEAK 37(18Q21.2) WILD-TYPE" "DEL PEAK 37(18Q21.2) WILD-TYPE" 
                    TCGA-BR-8296                     TCGA-BR-8297 
"DEL PEAK 37(18Q21.2) WILD-TYPE" "DEL PEAK 37(18Q21.2) WILD-TYPE" 
                    TCGA-CD-5798                     TCGA-CD-5799 
"DEL PEAK 37(18Q21.2) WILD-TYPE"   "DEL PEAK 37(18Q21.2) MUTATED" 
                    TCGA-CD-5800                     TCGA-CD-5801 
  "DEL PEAK 37(18Q21.2) MUTATED"   "DEL PEAK 37(18Q21.2) MUTATED" 
                    TCGA-CD-5802                     TCGA-CD-5803 
  "DEL PEAK 37(18Q21.2) MUTATED"   "DEL PEAK 37(18Q21.2) MUTATED" 
                    TCGA-CG-4300                     TCGA-CG-4301 
"DEL PEAK 37(18Q21.2) WILD-TYPE"   "DEL PEAK 37(18Q21.2) MUTATED" 
                    TCGA-CG-4304                     TCGA-CG-4305 
  "DEL PEAK 37(18Q21.2) MUTATED" "DEL PEAK 37(18Q21.2) WILD-TYPE" 
                    TCGA-CG-4306                     TCGA-CG-4436 
"DEL PEAK 37(18Q21.2) WILD-TYPE"   "DEL PEAK 37(18Q21.2) MUTATED" 
                    TCGA-CG-4437                     TCGA-CG-4438 
  "DEL PEAK 37(18Q21.2) MUTATED"   "DEL PEAK 37(18Q21.2) MUTATED" 
                    TCGA-CG-4440                     TCGA-CG-4441 
  "DEL PEAK 37(18Q21.2) MUTATED" "DEL PEAK 37(18Q21.2) WILD-TYPE" 
                    TCGA-CG-4443                     TCGA-CG-4444 
"DEL PEAK 37(18Q21.2) WILD-TYPE"   "DEL PEAK 37(18Q21.2) MUTATED" 
                    TCGA-CG-4449                     TCGA-CG-4455 
"DEL PEAK 37(18Q21.2) WILD-TYPE" "DEL PEAK 37(18Q21.2) WILD-TYPE" 
                    TCGA-CG-4460                     TCGA-CG-4462 
"DEL PEAK 37(18Q21.2) WILD-TYPE" "DEL PEAK 37(18Q21.2) WILD-TYPE" 
                    TCGA-CG-4465                     TCGA-CG-4466 
"DEL PEAK 37(18Q21.2) WILD-TYPE"   "DEL PEAK 37(18Q21.2) MUTATED" 
                    TCGA-CG-4469                     TCGA-CG-4472 
  "DEL PEAK 37(18Q21.2) MUTATED"   "DEL PEAK 37(18Q21.2) MUTATED" 
                    TCGA-CG-4474                     TCGA-CG-4477 
"DEL PEAK 37(18Q21.2) WILD-TYPE"   "DEL PEAK 37(18Q21.2) MUTATED" 
                    TCGA-CG-5716                     TCGA-CG-5717 
"DEL PEAK 37(18Q21.2) WILD-TYPE" "DEL PEAK 37(18Q21.2) WILD-TYPE" 
                    TCGA-CG-5718                     TCGA-CG-5719 
  "DEL PEAK 37(18Q21.2) MUTATED"   "DEL PEAK 37(18Q21.2) MUTATED" 
                    TCGA-CG-5720                     TCGA-CG-5721 
"DEL PEAK 37(18Q21.2) WILD-TYPE" "DEL PEAK 37(18Q21.2) WILD-TYPE" 
                    TCGA-CG-5722                     TCGA-CG-5723 
"DEL PEAK 37(18Q21.2) WILD-TYPE" "DEL PEAK 37(18Q21.2) WILD-TYPE" 
                    TCGA-CG-5724                     TCGA-CG-5725 
  "DEL PEAK 37(18Q21.2) MUTATED" "DEL PEAK 37(18Q21.2) WILD-TYPE" 
                    TCGA-CG-5726                     TCGA-CG-5727 
"DEL PEAK 37(18Q21.2) WILD-TYPE" "DEL PEAK 37(18Q21.2) WILD-TYPE" 
                    TCGA-CG-5728                     TCGA-CG-5730 
"DEL PEAK 37(18Q21.2) WILD-TYPE"   "DEL PEAK 37(18Q21.2) MUTATED" 
                    TCGA-CG-5732                     TCGA-CG-5733 
  "DEL PEAK 37(18Q21.2) MUTATED" "DEL PEAK 37(18Q21.2) WILD-TYPE" 
                    TCGA-CG-5734                     TCGA-D7-5577 
"DEL PEAK 37(18Q21.2) WILD-TYPE"   "DEL PEAK 37(18Q21.2) MUTATED" 
                    TCGA-D7-5578                     TCGA-D7-5579 
"DEL PEAK 37(18Q21.2) WILD-TYPE"   "DEL PEAK 37(18Q21.2) MUTATED" 
                    TCGA-D7-6518                     TCGA-D7-6519 
  "DEL PEAK 37(18Q21.2) MUTATED"   "DEL PEAK 37(18Q21.2) MUTATED" 
                    TCGA-D7-6520                     TCGA-D7-6521 
"DEL PEAK 37(18Q21.2) WILD-TYPE"   "DEL PEAK 37(18Q21.2) MUTATED" 
                    TCGA-D7-6522                     TCGA-D7-6524 
"DEL PEAK 37(18Q21.2) WILD-TYPE" "DEL PEAK 37(18Q21.2) WILD-TYPE" 
                    TCGA-D7-6525                     TCGA-D7-6526 
  "DEL PEAK 37(18Q21.2) MUTATED"   "DEL PEAK 37(18Q21.2) MUTATED" 
                    TCGA-D7-6527                     TCGA-D7-6528 
  "DEL PEAK 37(18Q21.2) MUTATED" "DEL PEAK 37(18Q21.2) WILD-TYPE" 
                    TCGA-D7-6815                     TCGA-D7-6817 
  "DEL PEAK 37(18Q21.2) MUTATED" "DEL PEAK 37(18Q21.2) WILD-TYPE" 
                    TCGA-D7-6818                     TCGA-D7-6820 
"DEL PEAK 37(18Q21.2) WILD-TYPE" "DEL PEAK 37(18Q21.2) WILD-TYPE" 
                    TCGA-D7-6822                     TCGA-EQ-5647 
  "DEL PEAK 37(18Q21.2) MUTATED"   "DEL PEAK 37(18Q21.2) MUTATED" 
                    TCGA-EQ-8122                     TCGA-F1-6177 
  "DEL PEAK 37(18Q21.2) MUTATED" "DEL PEAK 37(18Q21.2) WILD-TYPE" 
                    TCGA-F1-6874                     TCGA-F1-6875 
"DEL PEAK 37(18Q21.2) WILD-TYPE" "DEL PEAK 37(18Q21.2) WILD-TYPE" 
                    TCGA-FP-7735                     TCGA-FP-7829 
"DEL PEAK 37(18Q21.2) WILD-TYPE"   "DEL PEAK 37(18Q21.2) MUTATED" 
                    TCGA-FP-7916                     TCGA-FP-7998 
  "DEL PEAK 37(18Q21.2) MUTATED"   "DEL PEAK 37(18Q21.2) MUTATED" 
                    TCGA-HJ-7597                     TCGA-IN-7806 
"DEL PEAK 37(18Q21.2) WILD-TYPE" "DEL PEAK 37(18Q21.2) WILD-TYPE" 
                    TCGA-IN-7808                     TCGA-IP-7968 
  "DEL PEAK 37(18Q21.2) MUTATED"   "DEL PEAK 37(18Q21.2) MUTATED" 
[1] "hr=" "1.8"
D63V2, continuous
D63V3, binary
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  DEL PEAK 37(18Q21.2) MUTATED     25   38
  DEL PEAK 37(18Q21.2) WILD-TYPE   40   58
        clus
vv       DEL PEAK 37(18Q21.2) MUTATED DEL PEAK 37(18Q21.2) WILD-TYPE
  FEMALE                           25                             40
  MALE                             38                             58
D63V4, multiclass
D63V5, multiclass
    clus
vv   DEL PEAK 37(18Q21.2) MUTATED DEL PEAK 37(18Q21.2) WILD-TYPE
  T1                            0                              6
  T2                           24                             29
  T3                           27                             32
  T4                            9                             24
D63V6, multiclass
    clus
vv   DEL PEAK 37(18Q21.2) MUTATED DEL PEAK 37(18Q21.2) WILD-TYPE
  N0                           11                             39
  N1                           24                             33
  N2                           11                             13
  N3                           12                              7
D63V7, multiclass
    clus
vv   DEL PEAK 37(18Q21.2) MUTATED DEL PEAK 37(18Q21.2) WILD-TYPE
  M0                           50                             82
  M1                            8                             10
  MX                            5                              6
D63V8, multiclass
     clus
vv    DEL PEAK 37(18Q21.2) MUTATED DEL PEAK 37(18Q21.2) WILD-TYPE
  I                              7                             18
  II                            14                             29
  III                           22                             26
  IV                            14                             15
D63V9, binary
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  DEL PEAK 37(18Q21.2) MUTATED     61    2
  DEL PEAK 37(18Q21.2) WILD-TYPE   95    3
     clus
vv    DEL PEAK 37(18Q21.2) MUTATED DEL PEAK 37(18Q21.2) WILD-TYPE
  NO                             2                              3
  YES                           61                             95

Clustering(64) Variable = Del Peak 38(18q22.3) mutation analysis
D64V1, survival
                    TCGA-B7-5816                     TCGA-B7-5818 
"DEL PEAK 38(18Q22.3) WILD-TYPE"   "DEL PEAK 38(18Q22.3) MUTATED" 
                    TCGA-BR-6452                     TCGA-BR-6455 
"DEL PEAK 38(18Q22.3) WILD-TYPE" "DEL PEAK 38(18Q22.3) WILD-TYPE" 
                    TCGA-BR-6457                     TCGA-BR-6458 
"DEL PEAK 38(18Q22.3) WILD-TYPE"   "DEL PEAK 38(18Q22.3) MUTATED" 
                    TCGA-BR-6563                     TCGA-BR-6564 
"DEL PEAK 38(18Q22.3) WILD-TYPE"   "DEL PEAK 38(18Q22.3) MUTATED" 
                    TCGA-BR-6565                     TCGA-BR-6566 
"DEL PEAK 38(18Q22.3) WILD-TYPE" "DEL PEAK 38(18Q22.3) WILD-TYPE" 
                    TCGA-BR-6705                     TCGA-BR-6706 
"DEL PEAK 38(18Q22.3) WILD-TYPE" "DEL PEAK 38(18Q22.3) WILD-TYPE" 
                    TCGA-BR-6707                     TCGA-BR-6709 
"DEL PEAK 38(18Q22.3) WILD-TYPE"   "DEL PEAK 38(18Q22.3) MUTATED" 
                    TCGA-BR-6710                     TCGA-BR-6801 
"DEL PEAK 38(18Q22.3) WILD-TYPE" "DEL PEAK 38(18Q22.3) WILD-TYPE" 
                    TCGA-BR-6802                     TCGA-BR-6803 
"DEL PEAK 38(18Q22.3) WILD-TYPE" "DEL PEAK 38(18Q22.3) WILD-TYPE" 
                    TCGA-BR-6852                     TCGA-BR-7196 
"DEL PEAK 38(18Q22.3) WILD-TYPE" "DEL PEAK 38(18Q22.3) WILD-TYPE" 
                    TCGA-BR-7197                     TCGA-BR-7703 
"DEL PEAK 38(18Q22.3) WILD-TYPE" "DEL PEAK 38(18Q22.3) WILD-TYPE" 
                    TCGA-BR-7704                     TCGA-BR-7707 
"DEL PEAK 38(18Q22.3) WILD-TYPE" "DEL PEAK 38(18Q22.3) WILD-TYPE" 
                    TCGA-BR-7715                     TCGA-BR-7716 
  "DEL PEAK 38(18Q22.3) MUTATED"   "DEL PEAK 38(18Q22.3) MUTATED" 
                    TCGA-BR-7717                     TCGA-BR-7722 
"DEL PEAK 38(18Q22.3) WILD-TYPE"   "DEL PEAK 38(18Q22.3) MUTATED" 
                    TCGA-BR-7723                     TCGA-BR-7851 
  "DEL PEAK 38(18Q22.3) MUTATED" "DEL PEAK 38(18Q22.3) WILD-TYPE" 
                    TCGA-BR-7901                     TCGA-BR-7957 
"DEL PEAK 38(18Q22.3) WILD-TYPE"   "DEL PEAK 38(18Q22.3) MUTATED" 
                    TCGA-BR-7958                     TCGA-BR-7959 
"DEL PEAK 38(18Q22.3) WILD-TYPE" "DEL PEAK 38(18Q22.3) WILD-TYPE" 
                    TCGA-BR-8059                     TCGA-BR-8060 
"DEL PEAK 38(18Q22.3) WILD-TYPE" "DEL PEAK 38(18Q22.3) WILD-TYPE" 
                    TCGA-BR-8077                     TCGA-BR-8078 
"DEL PEAK 38(18Q22.3) WILD-TYPE" "DEL PEAK 38(18Q22.3) WILD-TYPE" 
                    TCGA-BR-8080                     TCGA-BR-8081 
"DEL PEAK 38(18Q22.3) WILD-TYPE" "DEL PEAK 38(18Q22.3) WILD-TYPE" 
                    TCGA-BR-8284                     TCGA-BR-8285 
"DEL PEAK 38(18Q22.3) WILD-TYPE" "DEL PEAK 38(18Q22.3) WILD-TYPE" 
                    TCGA-BR-8286                     TCGA-BR-8289 
"DEL PEAK 38(18Q22.3) WILD-TYPE" "DEL PEAK 38(18Q22.3) WILD-TYPE" 
                    TCGA-BR-8291                     TCGA-BR-8295 
"DEL PEAK 38(18Q22.3) WILD-TYPE" "DEL PEAK 38(18Q22.3) WILD-TYPE" 
                    TCGA-BR-8296                     TCGA-BR-8297 
"DEL PEAK 38(18Q22.3) WILD-TYPE" "DEL PEAK 38(18Q22.3) WILD-TYPE" 
                    TCGA-CD-5798                     TCGA-CD-5799 
"DEL PEAK 38(18Q22.3) WILD-TYPE"   "DEL PEAK 38(18Q22.3) MUTATED" 
                    TCGA-CD-5800                     TCGA-CD-5801 
"DEL PEAK 38(18Q22.3) WILD-TYPE"   "DEL PEAK 38(18Q22.3) MUTATED" 
                    TCGA-CD-5802                     TCGA-CD-5803 
  "DEL PEAK 38(18Q22.3) MUTATED"   "DEL PEAK 38(18Q22.3) MUTATED" 
                    TCGA-CG-4300                     TCGA-CG-4301 
  "DEL PEAK 38(18Q22.3) MUTATED"   "DEL PEAK 38(18Q22.3) MUTATED" 
                    TCGA-CG-4304                     TCGA-CG-4305 
"DEL PEAK 38(18Q22.3) WILD-TYPE" "DEL PEAK 38(18Q22.3) WILD-TYPE" 
                    TCGA-CG-4306                     TCGA-CG-4436 
"DEL PEAK 38(18Q22.3) WILD-TYPE"   "DEL PEAK 38(18Q22.3) MUTATED" 
                    TCGA-CG-4437                     TCGA-CG-4438 
  "DEL PEAK 38(18Q22.3) MUTATED"   "DEL PEAK 38(18Q22.3) MUTATED" 
                    TCGA-CG-4440                     TCGA-CG-4441 
  "DEL PEAK 38(18Q22.3) MUTATED" "DEL PEAK 38(18Q22.3) WILD-TYPE" 
                    TCGA-CG-4443                     TCGA-CG-4444 
"DEL PEAK 38(18Q22.3) WILD-TYPE"   "DEL PEAK 38(18Q22.3) MUTATED" 
                    TCGA-CG-4449                     TCGA-CG-4455 
  "DEL PEAK 38(18Q22.3) MUTATED" "DEL PEAK 38(18Q22.3) WILD-TYPE" 
                    TCGA-CG-4460                     TCGA-CG-4462 
"DEL PEAK 38(18Q22.3) WILD-TYPE" "DEL PEAK 38(18Q22.3) WILD-TYPE" 
                    TCGA-CG-4465                     TCGA-CG-4466 
"DEL PEAK 38(18Q22.3) WILD-TYPE"   "DEL PEAK 38(18Q22.3) MUTATED" 
                    TCGA-CG-4469                     TCGA-CG-4472 
  "DEL PEAK 38(18Q22.3) MUTATED" "DEL PEAK 38(18Q22.3) WILD-TYPE" 
                    TCGA-CG-4474                     TCGA-CG-4477 
"DEL PEAK 38(18Q22.3) WILD-TYPE"   "DEL PEAK 38(18Q22.3) MUTATED" 
                    TCGA-CG-5716                     TCGA-CG-5717 
"DEL PEAK 38(18Q22.3) WILD-TYPE" "DEL PEAK 38(18Q22.3) WILD-TYPE" 
                    TCGA-CG-5718                     TCGA-CG-5719 
  "DEL PEAK 38(18Q22.3) MUTATED"   "DEL PEAK 38(18Q22.3) MUTATED" 
                    TCGA-CG-5720                     TCGA-CG-5721 
"DEL PEAK 38(18Q22.3) WILD-TYPE" "DEL PEAK 38(18Q22.3) WILD-TYPE" 
                    TCGA-CG-5722                     TCGA-CG-5723 
"DEL PEAK 38(18Q22.3) WILD-TYPE" "DEL PEAK 38(18Q22.3) WILD-TYPE" 
                    TCGA-CG-5724                     TCGA-CG-5725 
  "DEL PEAK 38(18Q22.3) MUTATED" "DEL PEAK 38(18Q22.3) WILD-TYPE" 
                    TCGA-CG-5726                     TCGA-CG-5727 
"DEL PEAK 38(18Q22.3) WILD-TYPE" "DEL PEAK 38(18Q22.3) WILD-TYPE" 
                    TCGA-CG-5728                     TCGA-CG-5730 
"DEL PEAK 38(18Q22.3) WILD-TYPE"   "DEL PEAK 38(18Q22.3) MUTATED" 
                    TCGA-CG-5732                     TCGA-CG-5733 
  "DEL PEAK 38(18Q22.3) MUTATED" "DEL PEAK 38(18Q22.3) WILD-TYPE" 
                    TCGA-CG-5734                     TCGA-D7-5577 
"DEL PEAK 38(18Q22.3) WILD-TYPE"   "DEL PEAK 38(18Q22.3) MUTATED" 
                    TCGA-D7-5578                     TCGA-D7-5579 
"DEL PEAK 38(18Q22.3) WILD-TYPE"   "DEL PEAK 38(18Q22.3) MUTATED" 
                    TCGA-D7-6518                     TCGA-D7-6519 
  "DEL PEAK 38(18Q22.3) MUTATED"   "DEL PEAK 38(18Q22.3) MUTATED" 
                    TCGA-D7-6520                     TCGA-D7-6521 
"DEL PEAK 38(18Q22.3) WILD-TYPE" "DEL PEAK 38(18Q22.3) WILD-TYPE" 
                    TCGA-D7-6522                     TCGA-D7-6524 
"DEL PEAK 38(18Q22.3) WILD-TYPE" "DEL PEAK 38(18Q22.3) WILD-TYPE" 
                    TCGA-D7-6525                     TCGA-D7-6526 
  "DEL PEAK 38(18Q22.3) MUTATED"   "DEL PEAK 38(18Q22.3) MUTATED" 
                    TCGA-D7-6527                     TCGA-D7-6528 
  "DEL PEAK 38(18Q22.3) MUTATED" "DEL PEAK 38(18Q22.3) WILD-TYPE" 
                    TCGA-D7-6815                     TCGA-D7-6817 
  "DEL PEAK 38(18Q22.3) MUTATED" "DEL PEAK 38(18Q22.3) WILD-TYPE" 
                    TCGA-D7-6818                     TCGA-D7-6820 
"DEL PEAK 38(18Q22.3) WILD-TYPE" "DEL PEAK 38(18Q22.3) WILD-TYPE" 
                    TCGA-D7-6822                     TCGA-EQ-5647 
"DEL PEAK 38(18Q22.3) WILD-TYPE"   "DEL PEAK 38(18Q22.3) MUTATED" 
                    TCGA-EQ-8122                     TCGA-F1-6177 
  "DEL PEAK 38(18Q22.3) MUTATED" "DEL PEAK 38(18Q22.3) WILD-TYPE" 
                    TCGA-F1-6874                     TCGA-F1-6875 
"DEL PEAK 38(18Q22.3) WILD-TYPE" "DEL PEAK 38(18Q22.3) WILD-TYPE" 
                    TCGA-FP-7735                     TCGA-FP-7829 
"DEL PEAK 38(18Q22.3) WILD-TYPE"   "DEL PEAK 38(18Q22.3) MUTATED" 
                    TCGA-FP-7916                     TCGA-FP-7998 
  "DEL PEAK 38(18Q22.3) MUTATED"   "DEL PEAK 38(18Q22.3) MUTATED" 
                    TCGA-HJ-7597                     TCGA-IN-7806 
"DEL PEAK 38(18Q22.3) WILD-TYPE" "DEL PEAK 38(18Q22.3) WILD-TYPE" 
                    TCGA-IN-7808                     TCGA-IP-7968 
"DEL PEAK 38(18Q22.3) WILD-TYPE" "DEL PEAK 38(18Q22.3) WILD-TYPE" 
                    TCGA-B7-5816                     TCGA-B7-5818 
"DEL PEAK 38(18Q22.3) WILD-TYPE"   "DEL PEAK 38(18Q22.3) MUTATED" 
                    TCGA-BR-6452                     TCGA-BR-6455 
"DEL PEAK 38(18Q22.3) WILD-TYPE" "DEL PEAK 38(18Q22.3) WILD-TYPE" 
                    TCGA-BR-6457                     TCGA-BR-6458 
"DEL PEAK 38(18Q22.3) WILD-TYPE"   "DEL PEAK 38(18Q22.3) MUTATED" 
                    TCGA-BR-6563                     TCGA-BR-6564 
"DEL PEAK 38(18Q22.3) WILD-TYPE"   "DEL PEAK 38(18Q22.3) MUTATED" 
                    TCGA-BR-6565                     TCGA-BR-6566 
"DEL PEAK 38(18Q22.3) WILD-TYPE" "DEL PEAK 38(18Q22.3) WILD-TYPE" 
                    TCGA-BR-6705                     TCGA-BR-6706 
"DEL PEAK 38(18Q22.3) WILD-TYPE" "DEL PEAK 38(18Q22.3) WILD-TYPE" 
                    TCGA-BR-6707                     TCGA-BR-6709 
"DEL PEAK 38(18Q22.3) WILD-TYPE"   "DEL PEAK 38(18Q22.3) MUTATED" 
                    TCGA-BR-6710                     TCGA-BR-6801 
"DEL PEAK 38(18Q22.3) WILD-TYPE" "DEL PEAK 38(18Q22.3) WILD-TYPE" 
                    TCGA-BR-6802                     TCGA-BR-6803 
"DEL PEAK 38(18Q22.3) WILD-TYPE" "DEL PEAK 38(18Q22.3) WILD-TYPE" 
                    TCGA-BR-6852                     TCGA-BR-7196 
"DEL PEAK 38(18Q22.3) WILD-TYPE" "DEL PEAK 38(18Q22.3) WILD-TYPE" 
                    TCGA-BR-7197                     TCGA-BR-7703 
"DEL PEAK 38(18Q22.3) WILD-TYPE" "DEL PEAK 38(18Q22.3) WILD-TYPE" 
                    TCGA-BR-7704                     TCGA-BR-7707 
"DEL PEAK 38(18Q22.3) WILD-TYPE" "DEL PEAK 38(18Q22.3) WILD-TYPE" 
                    TCGA-BR-7715                     TCGA-BR-7716 
  "DEL PEAK 38(18Q22.3) MUTATED"   "DEL PEAK 38(18Q22.3) MUTATED" 
                    TCGA-BR-7717                     TCGA-BR-7722 
"DEL PEAK 38(18Q22.3) WILD-TYPE"   "DEL PEAK 38(18Q22.3) MUTATED" 
                    TCGA-BR-7723                     TCGA-BR-7851 
  "DEL PEAK 38(18Q22.3) MUTATED" "DEL PEAK 38(18Q22.3) WILD-TYPE" 
                    TCGA-BR-7901                     TCGA-BR-7957 
"DEL PEAK 38(18Q22.3) WILD-TYPE"   "DEL PEAK 38(18Q22.3) MUTATED" 
                    TCGA-BR-7958                     TCGA-BR-7959 
"DEL PEAK 38(18Q22.3) WILD-TYPE" "DEL PEAK 38(18Q22.3) WILD-TYPE" 
                    TCGA-BR-8059                     TCGA-BR-8060 
"DEL PEAK 38(18Q22.3) WILD-TYPE" "DEL PEAK 38(18Q22.3) WILD-TYPE" 
                    TCGA-BR-8077                     TCGA-BR-8078 
"DEL PEAK 38(18Q22.3) WILD-TYPE" "DEL PEAK 38(18Q22.3) WILD-TYPE" 
                    TCGA-BR-8080                     TCGA-BR-8081 
"DEL PEAK 38(18Q22.3) WILD-TYPE" "DEL PEAK 38(18Q22.3) WILD-TYPE" 
                    TCGA-BR-8284                     TCGA-BR-8285 
"DEL PEAK 38(18Q22.3) WILD-TYPE" "DEL PEAK 38(18Q22.3) WILD-TYPE" 
                    TCGA-BR-8286                     TCGA-BR-8289 
"DEL PEAK 38(18Q22.3) WILD-TYPE" "DEL PEAK 38(18Q22.3) WILD-TYPE" 
                    TCGA-BR-8291                     TCGA-BR-8295 
"DEL PEAK 38(18Q22.3) WILD-TYPE" "DEL PEAK 38(18Q22.3) WILD-TYPE" 
                    TCGA-BR-8296                     TCGA-BR-8297 
"DEL PEAK 38(18Q22.3) WILD-TYPE" "DEL PEAK 38(18Q22.3) WILD-TYPE" 
                    TCGA-CD-5798                     TCGA-CD-5799 
"DEL PEAK 38(18Q22.3) WILD-TYPE"   "DEL PEAK 38(18Q22.3) MUTATED" 
                    TCGA-CD-5800                     TCGA-CD-5801 
"DEL PEAK 38(18Q22.3) WILD-TYPE"   "DEL PEAK 38(18Q22.3) MUTATED" 
                    TCGA-CD-5802                     TCGA-CD-5803 
  "DEL PEAK 38(18Q22.3) MUTATED"   "DEL PEAK 38(18Q22.3) MUTATED" 
                    TCGA-CG-4300                     TCGA-CG-4301 
  "DEL PEAK 38(18Q22.3) MUTATED"   "DEL PEAK 38(18Q22.3) MUTATED" 
                    TCGA-CG-4304                     TCGA-CG-4305 
"DEL PEAK 38(18Q22.3) WILD-TYPE" "DEL PEAK 38(18Q22.3) WILD-TYPE" 
                    TCGA-CG-4306                     TCGA-CG-4436 
"DEL PEAK 38(18Q22.3) WILD-TYPE"   "DEL PEAK 38(18Q22.3) MUTATED" 
                    TCGA-CG-4437                     TCGA-CG-4438 
  "DEL PEAK 38(18Q22.3) MUTATED"   "DEL PEAK 38(18Q22.3) MUTATED" 
                    TCGA-CG-4440                     TCGA-CG-4441 
  "DEL PEAK 38(18Q22.3) MUTATED" "DEL PEAK 38(18Q22.3) WILD-TYPE" 
                    TCGA-CG-4443                     TCGA-CG-4444 
"DEL PEAK 38(18Q22.3) WILD-TYPE"   "DEL PEAK 38(18Q22.3) MUTATED" 
                    TCGA-CG-4449                     TCGA-CG-4455 
  "DEL PEAK 38(18Q22.3) MUTATED" "DEL PEAK 38(18Q22.3) WILD-TYPE" 
                    TCGA-CG-4460                     TCGA-CG-4462 
"DEL PEAK 38(18Q22.3) WILD-TYPE" "DEL PEAK 38(18Q22.3) WILD-TYPE" 
                    TCGA-CG-4465                     TCGA-CG-4466 
"DEL PEAK 38(18Q22.3) WILD-TYPE"   "DEL PEAK 38(18Q22.3) MUTATED" 
                    TCGA-CG-4469                     TCGA-CG-4472 
  "DEL PEAK 38(18Q22.3) MUTATED" "DEL PEAK 38(18Q22.3) WILD-TYPE" 
                    TCGA-CG-4474                     TCGA-CG-4477 
"DEL PEAK 38(18Q22.3) WILD-TYPE"   "DEL PEAK 38(18Q22.3) MUTATED" 
                    TCGA-CG-5716                     TCGA-CG-5717 
"DEL PEAK 38(18Q22.3) WILD-TYPE" "DEL PEAK 38(18Q22.3) WILD-TYPE" 
                    TCGA-CG-5718                     TCGA-CG-5719 
  "DEL PEAK 38(18Q22.3) MUTATED"   "DEL PEAK 38(18Q22.3) MUTATED" 
                    TCGA-CG-5720                     TCGA-CG-5721 
"DEL PEAK 38(18Q22.3) WILD-TYPE" "DEL PEAK 38(18Q22.3) WILD-TYPE" 
                    TCGA-CG-5722                     TCGA-CG-5723 
"DEL PEAK 38(18Q22.3) WILD-TYPE" "DEL PEAK 38(18Q22.3) WILD-TYPE" 
                    TCGA-CG-5724                     TCGA-CG-5725 
  "DEL PEAK 38(18Q22.3) MUTATED" "DEL PEAK 38(18Q22.3) WILD-TYPE" 
                    TCGA-CG-5726                     TCGA-CG-5727 
"DEL PEAK 38(18Q22.3) WILD-TYPE" "DEL PEAK 38(18Q22.3) WILD-TYPE" 
                    TCGA-CG-5728                     TCGA-CG-5730 
"DEL PEAK 38(18Q22.3) WILD-TYPE"   "DEL PEAK 38(18Q22.3) MUTATED" 
                    TCGA-CG-5732                     TCGA-CG-5733 
  "DEL PEAK 38(18Q22.3) MUTATED" "DEL PEAK 38(18Q22.3) WILD-TYPE" 
                    TCGA-CG-5734                     TCGA-D7-5577 
"DEL PEAK 38(18Q22.3) WILD-TYPE"   "DEL PEAK 38(18Q22.3) MUTATED" 
                    TCGA-D7-5578                     TCGA-D7-5579 
"DEL PEAK 38(18Q22.3) WILD-TYPE"   "DEL PEAK 38(18Q22.3) MUTATED" 
                    TCGA-D7-6518                     TCGA-D7-6519 
  "DEL PEAK 38(18Q22.3) MUTATED"   "DEL PEAK 38(18Q22.3) MUTATED" 
                    TCGA-D7-6520                     TCGA-D7-6521 
"DEL PEAK 38(18Q22.3) WILD-TYPE" "DEL PEAK 38(18Q22.3) WILD-TYPE" 
                    TCGA-D7-6522                     TCGA-D7-6524 
"DEL PEAK 38(18Q22.3) WILD-TYPE" "DEL PEAK 38(18Q22.3) WILD-TYPE" 
                    TCGA-D7-6525                     TCGA-D7-6526 
  "DEL PEAK 38(18Q22.3) MUTATED"   "DEL PEAK 38(18Q22.3) MUTATED" 
                    TCGA-D7-6527                     TCGA-D7-6528 
  "DEL PEAK 38(18Q22.3) MUTATED" "DEL PEAK 38(18Q22.3) WILD-TYPE" 
                    TCGA-D7-6815                     TCGA-D7-6817 
  "DEL PEAK 38(18Q22.3) MUTATED" "DEL PEAK 38(18Q22.3) WILD-TYPE" 
                    TCGA-D7-6818                     TCGA-D7-6820 
"DEL PEAK 38(18Q22.3) WILD-TYPE" "DEL PEAK 38(18Q22.3) WILD-TYPE" 
                    TCGA-D7-6822                     TCGA-EQ-5647 
"DEL PEAK 38(18Q22.3) WILD-TYPE"   "DEL PEAK 38(18Q22.3) MUTATED" 
                    TCGA-EQ-8122                     TCGA-F1-6177 
  "DEL PEAK 38(18Q22.3) MUTATED" "DEL PEAK 38(18Q22.3) WILD-TYPE" 
                    TCGA-F1-6874                     TCGA-F1-6875 
"DEL PEAK 38(18Q22.3) WILD-TYPE" "DEL PEAK 38(18Q22.3) WILD-TYPE" 
                    TCGA-FP-7735                     TCGA-FP-7829 
"DEL PEAK 38(18Q22.3) WILD-TYPE"   "DEL PEAK 38(18Q22.3) MUTATED" 
                    TCGA-FP-7916                     TCGA-FP-7998 
  "DEL PEAK 38(18Q22.3) MUTATED"   "DEL PEAK 38(18Q22.3) MUTATED" 
                    TCGA-HJ-7597                     TCGA-IN-7806 
"DEL PEAK 38(18Q22.3) WILD-TYPE" "DEL PEAK 38(18Q22.3) WILD-TYPE" 
                    TCGA-IN-7808                     TCGA-IP-7968 
"DEL PEAK 38(18Q22.3) WILD-TYPE" "DEL PEAK 38(18Q22.3) WILD-TYPE" 
                    TCGA-B7-5816                     TCGA-B7-5818 
"DEL PEAK 38(18Q22.3) WILD-TYPE"   "DEL PEAK 38(18Q22.3) MUTATED" 
                    TCGA-BR-6452                     TCGA-BR-6455 
"DEL PEAK 38(18Q22.3) WILD-TYPE" "DEL PEAK 38(18Q22.3) WILD-TYPE" 
                    TCGA-BR-6457                     TCGA-BR-6458 
"DEL PEAK 38(18Q22.3) WILD-TYPE"   "DEL PEAK 38(18Q22.3) MUTATED" 
                    TCGA-BR-6563                     TCGA-BR-6564 
"DEL PEAK 38(18Q22.3) WILD-TYPE"   "DEL PEAK 38(18Q22.3) MUTATED" 
                    TCGA-BR-6565                     TCGA-BR-6566 
"DEL PEAK 38(18Q22.3) WILD-TYPE" "DEL PEAK 38(18Q22.3) WILD-TYPE" 
                    TCGA-BR-6705                     TCGA-BR-6706 
"DEL PEAK 38(18Q22.3) WILD-TYPE" "DEL PEAK 38(18Q22.3) WILD-TYPE" 
                    TCGA-BR-6707                     TCGA-BR-6709 
"DEL PEAK 38(18Q22.3) WILD-TYPE"   "DEL PEAK 38(18Q22.3) MUTATED" 
                    TCGA-BR-6710                     TCGA-BR-6801 
"DEL PEAK 38(18Q22.3) WILD-TYPE" "DEL PEAK 38(18Q22.3) WILD-TYPE" 
                    TCGA-BR-6802                     TCGA-BR-6803 
"DEL PEAK 38(18Q22.3) WILD-TYPE" "DEL PEAK 38(18Q22.3) WILD-TYPE" 
                    TCGA-BR-6852                     TCGA-BR-7196 
"DEL PEAK 38(18Q22.3) WILD-TYPE" "DEL PEAK 38(18Q22.3) WILD-TYPE" 
                    TCGA-BR-7197                     TCGA-BR-7703 
"DEL PEAK 38(18Q22.3) WILD-TYPE" "DEL PEAK 38(18Q22.3) WILD-TYPE" 
                    TCGA-BR-7704                     TCGA-BR-7707 
"DEL PEAK 38(18Q22.3) WILD-TYPE" "DEL PEAK 38(18Q22.3) WILD-TYPE" 
                    TCGA-BR-7715                     TCGA-BR-7716 
  "DEL PEAK 38(18Q22.3) MUTATED"   "DEL PEAK 38(18Q22.3) MUTATED" 
                    TCGA-BR-7717                     TCGA-BR-7722 
"DEL PEAK 38(18Q22.3) WILD-TYPE"   "DEL PEAK 38(18Q22.3) MUTATED" 
                    TCGA-BR-7723                     TCGA-BR-7851 
  "DEL PEAK 38(18Q22.3) MUTATED" "DEL PEAK 38(18Q22.3) WILD-TYPE" 
                    TCGA-BR-7901                     TCGA-BR-7957 
"DEL PEAK 38(18Q22.3) WILD-TYPE"   "DEL PEAK 38(18Q22.3) MUTATED" 
                    TCGA-BR-7958                     TCGA-BR-7959 
"DEL PEAK 38(18Q22.3) WILD-TYPE" "DEL PEAK 38(18Q22.3) WILD-TYPE" 
                    TCGA-BR-8059                     TCGA-BR-8060 
"DEL PEAK 38(18Q22.3) WILD-TYPE" "DEL PEAK 38(18Q22.3) WILD-TYPE" 
                    TCGA-BR-8077                     TCGA-BR-8078 
"DEL PEAK 38(18Q22.3) WILD-TYPE" "DEL PEAK 38(18Q22.3) WILD-TYPE" 
                    TCGA-BR-8080                     TCGA-BR-8081 
"DEL PEAK 38(18Q22.3) WILD-TYPE" "DEL PEAK 38(18Q22.3) WILD-TYPE" 
                    TCGA-BR-8284                     TCGA-BR-8285 
"DEL PEAK 38(18Q22.3) WILD-TYPE" "DEL PEAK 38(18Q22.3) WILD-TYPE" 
                    TCGA-BR-8286                     TCGA-BR-8289 
"DEL PEAK 38(18Q22.3) WILD-TYPE" "DEL PEAK 38(18Q22.3) WILD-TYPE" 
                    TCGA-BR-8291                     TCGA-BR-8295 
"DEL PEAK 38(18Q22.3) WILD-TYPE" "DEL PEAK 38(18Q22.3) WILD-TYPE" 
                    TCGA-BR-8296                     TCGA-BR-8297 
"DEL PEAK 38(18Q22.3) WILD-TYPE" "DEL PEAK 38(18Q22.3) WILD-TYPE" 
                    TCGA-CD-5798                     TCGA-CD-5799 
"DEL PEAK 38(18Q22.3) WILD-TYPE"   "DEL PEAK 38(18Q22.3) MUTATED" 
                    TCGA-CD-5800                     TCGA-CD-5801 
"DEL PEAK 38(18Q22.3) WILD-TYPE"   "DEL PEAK 38(18Q22.3) MUTATED" 
                    TCGA-CD-5802                     TCGA-CD-5803 
  "DEL PEAK 38(18Q22.3) MUTATED"   "DEL PEAK 38(18Q22.3) MUTATED" 
                    TCGA-CG-4300                     TCGA-CG-4301 
  "DEL PEAK 38(18Q22.3) MUTATED"   "DEL PEAK 38(18Q22.3) MUTATED" 
                    TCGA-CG-4304                     TCGA-CG-4305 
"DEL PEAK 38(18Q22.3) WILD-TYPE" "DEL PEAK 38(18Q22.3) WILD-TYPE" 
                    TCGA-CG-4306                     TCGA-CG-4436 
"DEL PEAK 38(18Q22.3) WILD-TYPE"   "DEL PEAK 38(18Q22.3) MUTATED" 
                    TCGA-CG-4437                     TCGA-CG-4438 
  "DEL PEAK 38(18Q22.3) MUTATED"   "DEL PEAK 38(18Q22.3) MUTATED" 
                    TCGA-CG-4440                     TCGA-CG-4441 
  "DEL PEAK 38(18Q22.3) MUTATED" "DEL PEAK 38(18Q22.3) WILD-TYPE" 
                    TCGA-CG-4443                     TCGA-CG-4444 
"DEL PEAK 38(18Q22.3) WILD-TYPE"   "DEL PEAK 38(18Q22.3) MUTATED" 
                    TCGA-CG-4449                     TCGA-CG-4455 
  "DEL PEAK 38(18Q22.3) MUTATED" "DEL PEAK 38(18Q22.3) WILD-TYPE" 
                    TCGA-CG-4460                     TCGA-CG-4462 
"DEL PEAK 38(18Q22.3) WILD-TYPE" "DEL PEAK 38(18Q22.3) WILD-TYPE" 
                    TCGA-CG-4465                     TCGA-CG-4466 
"DEL PEAK 38(18Q22.3) WILD-TYPE"   "DEL PEAK 38(18Q22.3) MUTATED" 
                    TCGA-CG-4469                     TCGA-CG-4472 
  "DEL PEAK 38(18Q22.3) MUTATED" "DEL PEAK 38(18Q22.3) WILD-TYPE" 
                    TCGA-CG-4474                     TCGA-CG-4477 
"DEL PEAK 38(18Q22.3) WILD-TYPE"   "DEL PEAK 38(18Q22.3) MUTATED" 
                    TCGA-CG-5716                     TCGA-CG-5717 
"DEL PEAK 38(18Q22.3) WILD-TYPE" "DEL PEAK 38(18Q22.3) WILD-TYPE" 
                    TCGA-CG-5718                     TCGA-CG-5719 
  "DEL PEAK 38(18Q22.3) MUTATED"   "DEL PEAK 38(18Q22.3) MUTATED" 
                    TCGA-CG-5720                     TCGA-CG-5721 
"DEL PEAK 38(18Q22.3) WILD-TYPE" "DEL PEAK 38(18Q22.3) WILD-TYPE" 
                    TCGA-CG-5722                     TCGA-CG-5723 
"DEL PEAK 38(18Q22.3) WILD-TYPE" "DEL PEAK 38(18Q22.3) WILD-TYPE" 
                    TCGA-CG-5724                     TCGA-CG-5725 
  "DEL PEAK 38(18Q22.3) MUTATED" "DEL PEAK 38(18Q22.3) WILD-TYPE" 
                    TCGA-CG-5726                     TCGA-CG-5727 
"DEL PEAK 38(18Q22.3) WILD-TYPE" "DEL PEAK 38(18Q22.3) WILD-TYPE" 
                    TCGA-CG-5728                     TCGA-CG-5730 
"DEL PEAK 38(18Q22.3) WILD-TYPE"   "DEL PEAK 38(18Q22.3) MUTATED" 
                    TCGA-CG-5732                     TCGA-CG-5733 
  "DEL PEAK 38(18Q22.3) MUTATED" "DEL PEAK 38(18Q22.3) WILD-TYPE" 
                    TCGA-CG-5734                     TCGA-D7-5577 
"DEL PEAK 38(18Q22.3) WILD-TYPE"   "DEL PEAK 38(18Q22.3) MUTATED" 
                    TCGA-D7-5578                     TCGA-D7-5579 
"DEL PEAK 38(18Q22.3) WILD-TYPE"   "DEL PEAK 38(18Q22.3) MUTATED" 
                    TCGA-D7-6518                     TCGA-D7-6519 
  "DEL PEAK 38(18Q22.3) MUTATED"   "DEL PEAK 38(18Q22.3) MUTATED" 
                    TCGA-D7-6520                     TCGA-D7-6521 
"DEL PEAK 38(18Q22.3) WILD-TYPE" "DEL PEAK 38(18Q22.3) WILD-TYPE" 
                    TCGA-D7-6522                     TCGA-D7-6524 
"DEL PEAK 38(18Q22.3) WILD-TYPE" "DEL PEAK 38(18Q22.3) WILD-TYPE" 
                    TCGA-D7-6525                     TCGA-D7-6526 
  "DEL PEAK 38(18Q22.3) MUTATED"   "DEL PEAK 38(18Q22.3) MUTATED" 
                    TCGA-D7-6527                     TCGA-D7-6528 
  "DEL PEAK 38(18Q22.3) MUTATED" "DEL PEAK 38(18Q22.3) WILD-TYPE" 
                    TCGA-D7-6815                     TCGA-D7-6817 
  "DEL PEAK 38(18Q22.3) MUTATED" "DEL PEAK 38(18Q22.3) WILD-TYPE" 
                    TCGA-D7-6818                     TCGA-D7-6820 
"DEL PEAK 38(18Q22.3) WILD-TYPE" "DEL PEAK 38(18Q22.3) WILD-TYPE" 
                    TCGA-D7-6822                     TCGA-EQ-5647 
"DEL PEAK 38(18Q22.3) WILD-TYPE"   "DEL PEAK 38(18Q22.3) MUTATED" 
                    TCGA-EQ-8122                     TCGA-F1-6177 
  "DEL PEAK 38(18Q22.3) MUTATED" "DEL PEAK 38(18Q22.3) WILD-TYPE" 
                    TCGA-F1-6874                     TCGA-F1-6875 
"DEL PEAK 38(18Q22.3) WILD-TYPE" "DEL PEAK 38(18Q22.3) WILD-TYPE" 
                    TCGA-FP-7735                     TCGA-FP-7829 
"DEL PEAK 38(18Q22.3) WILD-TYPE"   "DEL PEAK 38(18Q22.3) MUTATED" 
                    TCGA-FP-7916                     TCGA-FP-7998 
  "DEL PEAK 38(18Q22.3) MUTATED"   "DEL PEAK 38(18Q22.3) MUTATED" 
                    TCGA-HJ-7597                     TCGA-IN-7806 
"DEL PEAK 38(18Q22.3) WILD-TYPE" "DEL PEAK 38(18Q22.3) WILD-TYPE" 
                    TCGA-IN-7808                     TCGA-IP-7968 
"DEL PEAK 38(18Q22.3) WILD-TYPE" "DEL PEAK 38(18Q22.3) WILD-TYPE" 
[1] "hr=" "1.6"
D64V2, continuous
D64V3, binary
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  DEL PEAK 38(18Q22.3) MUTATED     24   35
  DEL PEAK 38(18Q22.3) WILD-TYPE   41   61
        clus
vv       DEL PEAK 38(18Q22.3) MUTATED DEL PEAK 38(18Q22.3) WILD-TYPE
  FEMALE                           24                             41
  MALE                             35                             61
D64V4, multiclass
D64V5, multiclass
    clus
vv   DEL PEAK 38(18Q22.3) MUTATED DEL PEAK 38(18Q22.3) WILD-TYPE
  T1                            0                              6
  T2                           22                             31
  T3                           25                             34
  T4                            8                             25
D64V6, multiclass
    clus
vv   DEL PEAK 38(18Q22.3) MUTATED DEL PEAK 38(18Q22.3) WILD-TYPE
  N0                           10                             40
  N1                           24                             33
  N2                           10                             14
  N3                           11                              8
D64V7, multiclass
    clus
vv   DEL PEAK 38(18Q22.3) MUTATED DEL PEAK 38(18Q22.3) WILD-TYPE
  M0                           47                             85
  M1                            7                             11
  MX                            5                              6
D64V8, multiclass
     clus
vv    DEL PEAK 38(18Q22.3) MUTATED DEL PEAK 38(18Q22.3) WILD-TYPE
  I                              6                             19
  II                            15                             28
  III                           19                             29
  IV                            13                             16
D64V9, binary
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  DEL PEAK 38(18Q22.3) MUTATED     56    3
  DEL PEAK 38(18Q22.3) WILD-TYPE  100    2
     clus
vv    DEL PEAK 38(18Q22.3) MUTATED DEL PEAK 38(18Q22.3) WILD-TYPE
  NO                             3                              2
  YES                           56                            100

Clustering(65) Variable = Del Peak 39(19p13.3) mutation analysis
D65V1, survival
                    TCGA-B7-5816                     TCGA-B7-5818 
"DEL PEAK 39(19P13.3) WILD-TYPE" "DEL PEAK 39(19P13.3) WILD-TYPE" 
                    TCGA-BR-6452                     TCGA-BR-6455 
"DEL PEAK 39(19P13.3) WILD-TYPE" "DEL PEAK 39(19P13.3) WILD-TYPE" 
                    TCGA-BR-6457                     TCGA-BR-6458 
"DEL PEAK 39(19P13.3) WILD-TYPE"   "DEL PEAK 39(19P13.3) MUTATED" 
                    TCGA-BR-6563                     TCGA-BR-6564 
"DEL PEAK 39(19P13.3) WILD-TYPE" "DEL PEAK 39(19P13.3) WILD-TYPE" 
                    TCGA-BR-6565                     TCGA-BR-6566 
  "DEL PEAK 39(19P13.3) MUTATED" "DEL PEAK 39(19P13.3) WILD-TYPE" 
                    TCGA-BR-6705                     TCGA-BR-6706 
"DEL PEAK 39(19P13.3) WILD-TYPE" "DEL PEAK 39(19P13.3) WILD-TYPE" 
                    TCGA-BR-6707                     TCGA-BR-6709 
"DEL PEAK 39(19P13.3) WILD-TYPE" "DEL PEAK 39(19P13.3) WILD-TYPE" 
                    TCGA-BR-6710                     TCGA-BR-6801 
"DEL PEAK 39(19P13.3) WILD-TYPE" "DEL PEAK 39(19P13.3) WILD-TYPE" 
                    TCGA-BR-6802                     TCGA-BR-6803 
"DEL PEAK 39(19P13.3) WILD-TYPE" "DEL PEAK 39(19P13.3) WILD-TYPE" 
                    TCGA-BR-6852                     TCGA-BR-7196 
"DEL PEAK 39(19P13.3) WILD-TYPE" "DEL PEAK 39(19P13.3) WILD-TYPE" 
                    TCGA-BR-7197                     TCGA-BR-7703 
  "DEL PEAK 39(19P13.3) MUTATED" "DEL PEAK 39(19P13.3) WILD-TYPE" 
                    TCGA-BR-7704                     TCGA-BR-7707 
"DEL PEAK 39(19P13.3) WILD-TYPE" "DEL PEAK 39(19P13.3) WILD-TYPE" 
                    TCGA-BR-7715                     TCGA-BR-7716 
"DEL PEAK 39(19P13.3) WILD-TYPE"   "DEL PEAK 39(19P13.3) MUTATED" 
                    TCGA-BR-7717                     TCGA-BR-7722 
"DEL PEAK 39(19P13.3) WILD-TYPE" "DEL PEAK 39(19P13.3) WILD-TYPE" 
                    TCGA-BR-7723                     TCGA-BR-7851 
  "DEL PEAK 39(19P13.3) MUTATED" "DEL PEAK 39(19P13.3) WILD-TYPE" 
                    TCGA-BR-7901                     TCGA-BR-7957 
  "DEL PEAK 39(19P13.3) MUTATED" "DEL PEAK 39(19P13.3) WILD-TYPE" 
                    TCGA-BR-7958                     TCGA-BR-7959 
"DEL PEAK 39(19P13.3) WILD-TYPE" "DEL PEAK 39(19P13.3) WILD-TYPE" 
                    TCGA-BR-8059                     TCGA-BR-8060 
"DEL PEAK 39(19P13.3) WILD-TYPE" "DEL PEAK 39(19P13.3) WILD-TYPE" 
                    TCGA-BR-8077                     TCGA-BR-8078 
"DEL PEAK 39(19P13.3) WILD-TYPE" "DEL PEAK 39(19P13.3) WILD-TYPE" 
                    TCGA-BR-8080                     TCGA-BR-8081 
"DEL PEAK 39(19P13.3) WILD-TYPE" "DEL PEAK 39(19P13.3) WILD-TYPE" 
                    TCGA-BR-8284                     TCGA-BR-8285 
"DEL PEAK 39(19P13.3) WILD-TYPE" "DEL PEAK 39(19P13.3) WILD-TYPE" 
                    TCGA-BR-8286                     TCGA-BR-8289 
"DEL PEAK 39(19P13.3) WILD-TYPE" "DEL PEAK 39(19P13.3) WILD-TYPE" 
                    TCGA-BR-8291                     TCGA-BR-8295 
"DEL PEAK 39(19P13.3) WILD-TYPE" "DEL PEAK 39(19P13.3) WILD-TYPE" 
                    TCGA-BR-8296                     TCGA-BR-8297 
"DEL PEAK 39(19P13.3) WILD-TYPE" "DEL PEAK 39(19P13.3) WILD-TYPE" 
                    TCGA-CD-5798                     TCGA-CD-5799 
"DEL PEAK 39(19P13.3) WILD-TYPE"   "DEL PEAK 39(19P13.3) MUTATED" 
                    TCGA-CD-5800                     TCGA-CD-5801 
  "DEL PEAK 39(19P13.3) MUTATED" "DEL PEAK 39(19P13.3) WILD-TYPE" 
                    TCGA-CD-5802                     TCGA-CD-5803 
  "DEL PEAK 39(19P13.3) MUTATED" "DEL PEAK 39(19P13.3) WILD-TYPE" 
                    TCGA-CG-4300                     TCGA-CG-4301 
  "DEL PEAK 39(19P13.3) MUTATED" "DEL PEAK 39(19P13.3) WILD-TYPE" 
                    TCGA-CG-4304                     TCGA-CG-4305 
  "DEL PEAK 39(19P13.3) MUTATED" "DEL PEAK 39(19P13.3) WILD-TYPE" 
                    TCGA-CG-4306                     TCGA-CG-4436 
"DEL PEAK 39(19P13.3) WILD-TYPE"   "DEL PEAK 39(19P13.3) MUTATED" 
                    TCGA-CG-4437                     TCGA-CG-4438 
"DEL PEAK 39(19P13.3) WILD-TYPE"   "DEL PEAK 39(19P13.3) MUTATED" 
                    TCGA-CG-4440                     TCGA-CG-4441 
  "DEL PEAK 39(19P13.3) MUTATED" "DEL PEAK 39(19P13.3) WILD-TYPE" 
                    TCGA-CG-4443                     TCGA-CG-4444 
  "DEL PEAK 39(19P13.3) MUTATED" "DEL PEAK 39(19P13.3) WILD-TYPE" 
                    TCGA-CG-4449                     TCGA-CG-4455 
  "DEL PEAK 39(19P13.3) MUTATED" "DEL PEAK 39(19P13.3) WILD-TYPE" 
                    TCGA-CG-4460                     TCGA-CG-4462 
  "DEL PEAK 39(19P13.3) MUTATED" "DEL PEAK 39(19P13.3) WILD-TYPE" 
                    TCGA-CG-4465                     TCGA-CG-4466 
"DEL PEAK 39(19P13.3) WILD-TYPE"   "DEL PEAK 39(19P13.3) MUTATED" 
                    TCGA-CG-4469                     TCGA-CG-4472 
"DEL PEAK 39(19P13.3) WILD-TYPE" "DEL PEAK 39(19P13.3) WILD-TYPE" 
                    TCGA-CG-4474                     TCGA-CG-4477 
"DEL PEAK 39(19P13.3) WILD-TYPE" "DEL PEAK 39(19P13.3) WILD-TYPE" 
                    TCGA-CG-5716                     TCGA-CG-5717 
"DEL PEAK 39(19P13.3) WILD-TYPE" "DEL PEAK 39(19P13.3) WILD-TYPE" 
                    TCGA-CG-5718                     TCGA-CG-5719 
  "DEL PEAK 39(19P13.3) MUTATED" "DEL PEAK 39(19P13.3) WILD-TYPE" 
                    TCGA-CG-5720                     TCGA-CG-5721 
"DEL PEAK 39(19P13.3) WILD-TYPE" "DEL PEAK 39(19P13.3) WILD-TYPE" 
                    TCGA-CG-5722                     TCGA-CG-5723 
"DEL PEAK 39(19P13.3) WILD-TYPE" "DEL PEAK 39(19P13.3) WILD-TYPE" 
                    TCGA-CG-5724                     TCGA-CG-5725 
  "DEL PEAK 39(19P13.3) MUTATED"   "DEL PEAK 39(19P13.3) MUTATED" 
                    TCGA-CG-5726                     TCGA-CG-5727 
"DEL PEAK 39(19P13.3) WILD-TYPE" "DEL PEAK 39(19P13.3) WILD-TYPE" 
                    TCGA-CG-5728                     TCGA-CG-5730 
"DEL PEAK 39(19P13.3) WILD-TYPE"   "DEL PEAK 39(19P13.3) MUTATED" 
                    TCGA-CG-5732                     TCGA-CG-5733 
  "DEL PEAK 39(19P13.3) MUTATED" "DEL PEAK 39(19P13.3) WILD-TYPE" 
                    TCGA-CG-5734                     TCGA-D7-5577 
"DEL PEAK 39(19P13.3) WILD-TYPE" "DEL PEAK 39(19P13.3) WILD-TYPE" 
                    TCGA-D7-5578                     TCGA-D7-5579 
  "DEL PEAK 39(19P13.3) MUTATED" "DEL PEAK 39(19P13.3) WILD-TYPE" 
                    TCGA-D7-6518                     TCGA-D7-6519 
"DEL PEAK 39(19P13.3) WILD-TYPE" "DEL PEAK 39(19P13.3) WILD-TYPE" 
                    TCGA-D7-6520                     TCGA-D7-6521 
  "DEL PEAK 39(19P13.3) MUTATED" "DEL PEAK 39(19P13.3) WILD-TYPE" 
                    TCGA-D7-6522                     TCGA-D7-6524 
"DEL PEAK 39(19P13.3) WILD-TYPE" "DEL PEAK 39(19P13.3) WILD-TYPE" 
                    TCGA-D7-6525                     TCGA-D7-6526 
  "DEL PEAK 39(19P13.3) MUTATED"   "DEL PEAK 39(19P13.3) MUTATED" 
                    TCGA-D7-6527                     TCGA-D7-6528 
  "DEL PEAK 39(19P13.3) MUTATED" "DEL PEAK 39(19P13.3) WILD-TYPE" 
                    TCGA-D7-6815                     TCGA-D7-6817 
  "DEL PEAK 39(19P13.3) MUTATED"   "DEL PEAK 39(19P13.3) MUTATED" 
                    TCGA-D7-6818                     TCGA-D7-6820 
  "DEL PEAK 39(19P13.3) MUTATED"   "DEL PEAK 39(19P13.3) MUTATED" 
                    TCGA-D7-6822                     TCGA-EQ-5647 
"DEL PEAK 39(19P13.3) WILD-TYPE" "DEL PEAK 39(19P13.3) WILD-TYPE" 
                    TCGA-EQ-8122                     TCGA-F1-6177 
"DEL PEAK 39(19P13.3) WILD-TYPE" "DEL PEAK 39(19P13.3) WILD-TYPE" 
                    TCGA-F1-6874                     TCGA-F1-6875 
"DEL PEAK 39(19P13.3) WILD-TYPE"   "DEL PEAK 39(19P13.3) MUTATED" 
                    TCGA-FP-7735                     TCGA-FP-7829 
"DEL PEAK 39(19P13.3) WILD-TYPE" "DEL PEAK 39(19P13.3) WILD-TYPE" 
                    TCGA-FP-7916                     TCGA-FP-7998 
  "DEL PEAK 39(19P13.3) MUTATED" "DEL PEAK 39(19P13.3) WILD-TYPE" 
                    TCGA-HJ-7597                     TCGA-IN-7806 
"DEL PEAK 39(19P13.3) WILD-TYPE"   "DEL PEAK 39(19P13.3) MUTATED" 
                    TCGA-IN-7808                     TCGA-IP-7968 
"DEL PEAK 39(19P13.3) WILD-TYPE"   "DEL PEAK 39(19P13.3) MUTATED" 
                    TCGA-B7-5816                     TCGA-B7-5818 
"DEL PEAK 39(19P13.3) WILD-TYPE" "DEL PEAK 39(19P13.3) WILD-TYPE" 
                    TCGA-BR-6452                     TCGA-BR-6455 
"DEL PEAK 39(19P13.3) WILD-TYPE" "DEL PEAK 39(19P13.3) WILD-TYPE" 
                    TCGA-BR-6457                     TCGA-BR-6458 
"DEL PEAK 39(19P13.3) WILD-TYPE"   "DEL PEAK 39(19P13.3) MUTATED" 
                    TCGA-BR-6563                     TCGA-BR-6564 
"DEL PEAK 39(19P13.3) WILD-TYPE" "DEL PEAK 39(19P13.3) WILD-TYPE" 
                    TCGA-BR-6565                     TCGA-BR-6566 
  "DEL PEAK 39(19P13.3) MUTATED" "DEL PEAK 39(19P13.3) WILD-TYPE" 
                    TCGA-BR-6705                     TCGA-BR-6706 
"DEL PEAK 39(19P13.3) WILD-TYPE" "DEL PEAK 39(19P13.3) WILD-TYPE" 
                    TCGA-BR-6707                     TCGA-BR-6709 
"DEL PEAK 39(19P13.3) WILD-TYPE" "DEL PEAK 39(19P13.3) WILD-TYPE" 
                    TCGA-BR-6710                     TCGA-BR-6801 
"DEL PEAK 39(19P13.3) WILD-TYPE" "DEL PEAK 39(19P13.3) WILD-TYPE" 
                    TCGA-BR-6802                     TCGA-BR-6803 
"DEL PEAK 39(19P13.3) WILD-TYPE" "DEL PEAK 39(19P13.3) WILD-TYPE" 
                    TCGA-BR-6852                     TCGA-BR-7196 
"DEL PEAK 39(19P13.3) WILD-TYPE" "DEL PEAK 39(19P13.3) WILD-TYPE" 
                    TCGA-BR-7197                     TCGA-BR-7703 
  "DEL PEAK 39(19P13.3) MUTATED" "DEL PEAK 39(19P13.3) WILD-TYPE" 
                    TCGA-BR-7704                     TCGA-BR-7707 
"DEL PEAK 39(19P13.3) WILD-TYPE" "DEL PEAK 39(19P13.3) WILD-TYPE" 
                    TCGA-BR-7715                     TCGA-BR-7716 
"DEL PEAK 39(19P13.3) WILD-TYPE"   "DEL PEAK 39(19P13.3) MUTATED" 
                    TCGA-BR-7717                     TCGA-BR-7722 
"DEL PEAK 39(19P13.3) WILD-TYPE" "DEL PEAK 39(19P13.3) WILD-TYPE" 
                    TCGA-BR-7723                     TCGA-BR-7851 
  "DEL PEAK 39(19P13.3) MUTATED" "DEL PEAK 39(19P13.3) WILD-TYPE" 
                    TCGA-BR-7901                     TCGA-BR-7957 
  "DEL PEAK 39(19P13.3) MUTATED" "DEL PEAK 39(19P13.3) WILD-TYPE" 
                    TCGA-BR-7958                     TCGA-BR-7959 
"DEL PEAK 39(19P13.3) WILD-TYPE" "DEL PEAK 39(19P13.3) WILD-TYPE" 
                    TCGA-BR-8059                     TCGA-BR-8060 
"DEL PEAK 39(19P13.3) WILD-TYPE" "DEL PEAK 39(19P13.3) WILD-TYPE" 
                    TCGA-BR-8077                     TCGA-BR-8078 
"DEL PEAK 39(19P13.3) WILD-TYPE" "DEL PEAK 39(19P13.3) WILD-TYPE" 
                    TCGA-BR-8080                     TCGA-BR-8081 
"DEL PEAK 39(19P13.3) WILD-TYPE" "DEL PEAK 39(19P13.3) WILD-TYPE" 
                    TCGA-BR-8284                     TCGA-BR-8285 
"DEL PEAK 39(19P13.3) WILD-TYPE" "DEL PEAK 39(19P13.3) WILD-TYPE" 
                    TCGA-BR-8286                     TCGA-BR-8289 
"DEL PEAK 39(19P13.3) WILD-TYPE" "DEL PEAK 39(19P13.3) WILD-TYPE" 
                    TCGA-BR-8291                     TCGA-BR-8295 
"DEL PEAK 39(19P13.3) WILD-TYPE" "DEL PEAK 39(19P13.3) WILD-TYPE" 
                    TCGA-BR-8296                     TCGA-BR-8297 
"DEL PEAK 39(19P13.3) WILD-TYPE" "DEL PEAK 39(19P13.3) WILD-TYPE" 
                    TCGA-CD-5798                     TCGA-CD-5799 
"DEL PEAK 39(19P13.3) WILD-TYPE"   "DEL PEAK 39(19P13.3) MUTATED" 
                    TCGA-CD-5800                     TCGA-CD-5801 
  "DEL PEAK 39(19P13.3) MUTATED" "DEL PEAK 39(19P13.3) WILD-TYPE" 
                    TCGA-CD-5802                     TCGA-CD-5803 
  "DEL PEAK 39(19P13.3) MUTATED" "DEL PEAK 39(19P13.3) WILD-TYPE" 
                    TCGA-CG-4300                     TCGA-CG-4301 
  "DEL PEAK 39(19P13.3) MUTATED" "DEL PEAK 39(19P13.3) WILD-TYPE" 
                    TCGA-CG-4304                     TCGA-CG-4305 
  "DEL PEAK 39(19P13.3) MUTATED" "DEL PEAK 39(19P13.3) WILD-TYPE" 
                    TCGA-CG-4306                     TCGA-CG-4436 
"DEL PEAK 39(19P13.3) WILD-TYPE"   "DEL PEAK 39(19P13.3) MUTATED" 
                    TCGA-CG-4437                     TCGA-CG-4438 
"DEL PEAK 39(19P13.3) WILD-TYPE"   "DEL PEAK 39(19P13.3) MUTATED" 
                    TCGA-CG-4440                     TCGA-CG-4441 
  "DEL PEAK 39(19P13.3) MUTATED" "DEL PEAK 39(19P13.3) WILD-TYPE" 
                    TCGA-CG-4443                     TCGA-CG-4444 
  "DEL PEAK 39(19P13.3) MUTATED" "DEL PEAK 39(19P13.3) WILD-TYPE" 
                    TCGA-CG-4449                     TCGA-CG-4455 
  "DEL PEAK 39(19P13.3) MUTATED" "DEL PEAK 39(19P13.3) WILD-TYPE" 
                    TCGA-CG-4460                     TCGA-CG-4462 
  "DEL PEAK 39(19P13.3) MUTATED" "DEL PEAK 39(19P13.3) WILD-TYPE" 
                    TCGA-CG-4465                     TCGA-CG-4466 
"DEL PEAK 39(19P13.3) WILD-TYPE"   "DEL PEAK 39(19P13.3) MUTATED" 
                    TCGA-CG-4469                     TCGA-CG-4472 
"DEL PEAK 39(19P13.3) WILD-TYPE" "DEL PEAK 39(19P13.3) WILD-TYPE" 
                    TCGA-CG-4474                     TCGA-CG-4477 
"DEL PEAK 39(19P13.3) WILD-TYPE" "DEL PEAK 39(19P13.3) WILD-TYPE" 
                    TCGA-CG-5716                     TCGA-CG-5717 
"DEL PEAK 39(19P13.3) WILD-TYPE" "DEL PEAK 39(19P13.3) WILD-TYPE" 
                    TCGA-CG-5718                     TCGA-CG-5719 
  "DEL PEAK 39(19P13.3) MUTATED" "DEL PEAK 39(19P13.3) WILD-TYPE" 
                    TCGA-CG-5720                     TCGA-CG-5721 
"DEL PEAK 39(19P13.3) WILD-TYPE" "DEL PEAK 39(19P13.3) WILD-TYPE" 
                    TCGA-CG-5722                     TCGA-CG-5723 
"DEL PEAK 39(19P13.3) WILD-TYPE" "DEL PEAK 39(19P13.3) WILD-TYPE" 
                    TCGA-CG-5724                     TCGA-CG-5725 
  "DEL PEAK 39(19P13.3) MUTATED"   "DEL PEAK 39(19P13.3) MUTATED" 
                    TCGA-CG-5726                     TCGA-CG-5727 
"DEL PEAK 39(19P13.3) WILD-TYPE" "DEL PEAK 39(19P13.3) WILD-TYPE" 
                    TCGA-CG-5728                     TCGA-CG-5730 
"DEL PEAK 39(19P13.3) WILD-TYPE"   "DEL PEAK 39(19P13.3) MUTATED" 
                    TCGA-CG-5732                     TCGA-CG-5733 
  "DEL PEAK 39(19P13.3) MUTATED" "DEL PEAK 39(19P13.3) WILD-TYPE" 
                    TCGA-CG-5734                     TCGA-D7-5577 
"DEL PEAK 39(19P13.3) WILD-TYPE" "DEL PEAK 39(19P13.3) WILD-TYPE" 
                    TCGA-D7-5578                     TCGA-D7-5579 
  "DEL PEAK 39(19P13.3) MUTATED" "DEL PEAK 39(19P13.3) WILD-TYPE" 
                    TCGA-D7-6518                     TCGA-D7-6519 
"DEL PEAK 39(19P13.3) WILD-TYPE" "DEL PEAK 39(19P13.3) WILD-TYPE" 
                    TCGA-D7-6520                     TCGA-D7-6521 
  "DEL PEAK 39(19P13.3) MUTATED" "DEL PEAK 39(19P13.3) WILD-TYPE" 
                    TCGA-D7-6522                     TCGA-D7-6524 
"DEL PEAK 39(19P13.3) WILD-TYPE" "DEL PEAK 39(19P13.3) WILD-TYPE" 
                    TCGA-D7-6525                     TCGA-D7-6526 
  "DEL PEAK 39(19P13.3) MUTATED"   "DEL PEAK 39(19P13.3) MUTATED" 
                    TCGA-D7-6527                     TCGA-D7-6528 
  "DEL PEAK 39(19P13.3) MUTATED" "DEL PEAK 39(19P13.3) WILD-TYPE" 
                    TCGA-D7-6815                     TCGA-D7-6817 
  "DEL PEAK 39(19P13.3) MUTATED"   "DEL PEAK 39(19P13.3) MUTATED" 
                    TCGA-D7-6818                     TCGA-D7-6820 
  "DEL PEAK 39(19P13.3) MUTATED"   "DEL PEAK 39(19P13.3) MUTATED" 
                    TCGA-D7-6822                     TCGA-EQ-5647 
"DEL PEAK 39(19P13.3) WILD-TYPE" "DEL PEAK 39(19P13.3) WILD-TYPE" 
                    TCGA-EQ-8122                     TCGA-F1-6177 
"DEL PEAK 39(19P13.3) WILD-TYPE" "DEL PEAK 39(19P13.3) WILD-TYPE" 
                    TCGA-F1-6874                     TCGA-F1-6875 
"DEL PEAK 39(19P13.3) WILD-TYPE"   "DEL PEAK 39(19P13.3) MUTATED" 
                    TCGA-FP-7735                     TCGA-FP-7829 
"DEL PEAK 39(19P13.3) WILD-TYPE" "DEL PEAK 39(19P13.3) WILD-TYPE" 
                    TCGA-FP-7916                     TCGA-FP-7998 
  "DEL PEAK 39(19P13.3) MUTATED" "DEL PEAK 39(19P13.3) WILD-TYPE" 
                    TCGA-HJ-7597                     TCGA-IN-7806 
"DEL PEAK 39(19P13.3) WILD-TYPE"   "DEL PEAK 39(19P13.3) MUTATED" 
                    TCGA-IN-7808                     TCGA-IP-7968 
"DEL PEAK 39(19P13.3) WILD-TYPE"   "DEL PEAK 39(19P13.3) MUTATED" 
                    TCGA-B7-5816                     TCGA-B7-5818 
"DEL PEAK 39(19P13.3) WILD-TYPE" "DEL PEAK 39(19P13.3) WILD-TYPE" 
                    TCGA-BR-6452                     TCGA-BR-6455 
"DEL PEAK 39(19P13.3) WILD-TYPE" "DEL PEAK 39(19P13.3) WILD-TYPE" 
                    TCGA-BR-6457                     TCGA-BR-6458 
"DEL PEAK 39(19P13.3) WILD-TYPE"   "DEL PEAK 39(19P13.3) MUTATED" 
                    TCGA-BR-6563                     TCGA-BR-6564 
"DEL PEAK 39(19P13.3) WILD-TYPE" "DEL PEAK 39(19P13.3) WILD-TYPE" 
                    TCGA-BR-6565                     TCGA-BR-6566 
  "DEL PEAK 39(19P13.3) MUTATED" "DEL PEAK 39(19P13.3) WILD-TYPE" 
                    TCGA-BR-6705                     TCGA-BR-6706 
"DEL PEAK 39(19P13.3) WILD-TYPE" "DEL PEAK 39(19P13.3) WILD-TYPE" 
                    TCGA-BR-6707                     TCGA-BR-6709 
"DEL PEAK 39(19P13.3) WILD-TYPE" "DEL PEAK 39(19P13.3) WILD-TYPE" 
                    TCGA-BR-6710                     TCGA-BR-6801 
"DEL PEAK 39(19P13.3) WILD-TYPE" "DEL PEAK 39(19P13.3) WILD-TYPE" 
                    TCGA-BR-6802                     TCGA-BR-6803 
"DEL PEAK 39(19P13.3) WILD-TYPE" "DEL PEAK 39(19P13.3) WILD-TYPE" 
                    TCGA-BR-6852                     TCGA-BR-7196 
"DEL PEAK 39(19P13.3) WILD-TYPE" "DEL PEAK 39(19P13.3) WILD-TYPE" 
                    TCGA-BR-7197                     TCGA-BR-7703 
  "DEL PEAK 39(19P13.3) MUTATED" "DEL PEAK 39(19P13.3) WILD-TYPE" 
                    TCGA-BR-7704                     TCGA-BR-7707 
"DEL PEAK 39(19P13.3) WILD-TYPE" "DEL PEAK 39(19P13.3) WILD-TYPE" 
                    TCGA-BR-7715                     TCGA-BR-7716 
"DEL PEAK 39(19P13.3) WILD-TYPE"   "DEL PEAK 39(19P13.3) MUTATED" 
                    TCGA-BR-7717                     TCGA-BR-7722 
"DEL PEAK 39(19P13.3) WILD-TYPE" "DEL PEAK 39(19P13.3) WILD-TYPE" 
                    TCGA-BR-7723                     TCGA-BR-7851 
  "DEL PEAK 39(19P13.3) MUTATED" "DEL PEAK 39(19P13.3) WILD-TYPE" 
                    TCGA-BR-7901                     TCGA-BR-7957 
  "DEL PEAK 39(19P13.3) MUTATED" "DEL PEAK 39(19P13.3) WILD-TYPE" 
                    TCGA-BR-7958                     TCGA-BR-7959 
"DEL PEAK 39(19P13.3) WILD-TYPE" "DEL PEAK 39(19P13.3) WILD-TYPE" 
                    TCGA-BR-8059                     TCGA-BR-8060 
"DEL PEAK 39(19P13.3) WILD-TYPE" "DEL PEAK 39(19P13.3) WILD-TYPE" 
                    TCGA-BR-8077                     TCGA-BR-8078 
"DEL PEAK 39(19P13.3) WILD-TYPE" "DEL PEAK 39(19P13.3) WILD-TYPE" 
                    TCGA-BR-8080                     TCGA-BR-8081 
"DEL PEAK 39(19P13.3) WILD-TYPE" "DEL PEAK 39(19P13.3) WILD-TYPE" 
                    TCGA-BR-8284                     TCGA-BR-8285 
"DEL PEAK 39(19P13.3) WILD-TYPE" "DEL PEAK 39(19P13.3) WILD-TYPE" 
                    TCGA-BR-8286                     TCGA-BR-8289 
"DEL PEAK 39(19P13.3) WILD-TYPE" "DEL PEAK 39(19P13.3) WILD-TYPE" 
                    TCGA-BR-8291                     TCGA-BR-8295 
"DEL PEAK 39(19P13.3) WILD-TYPE" "DEL PEAK 39(19P13.3) WILD-TYPE" 
                    TCGA-BR-8296                     TCGA-BR-8297 
"DEL PEAK 39(19P13.3) WILD-TYPE" "DEL PEAK 39(19P13.3) WILD-TYPE" 
                    TCGA-CD-5798                     TCGA-CD-5799 
"DEL PEAK 39(19P13.3) WILD-TYPE"   "DEL PEAK 39(19P13.3) MUTATED" 
                    TCGA-CD-5800                     TCGA-CD-5801 
  "DEL PEAK 39(19P13.3) MUTATED" "DEL PEAK 39(19P13.3) WILD-TYPE" 
                    TCGA-CD-5802                     TCGA-CD-5803 
  "DEL PEAK 39(19P13.3) MUTATED" "DEL PEAK 39(19P13.3) WILD-TYPE" 
                    TCGA-CG-4300                     TCGA-CG-4301 
  "DEL PEAK 39(19P13.3) MUTATED" "DEL PEAK 39(19P13.3) WILD-TYPE" 
                    TCGA-CG-4304                     TCGA-CG-4305 
  "DEL PEAK 39(19P13.3) MUTATED" "DEL PEAK 39(19P13.3) WILD-TYPE" 
                    TCGA-CG-4306                     TCGA-CG-4436 
"DEL PEAK 39(19P13.3) WILD-TYPE"   "DEL PEAK 39(19P13.3) MUTATED" 
                    TCGA-CG-4437                     TCGA-CG-4438 
"DEL PEAK 39(19P13.3) WILD-TYPE"   "DEL PEAK 39(19P13.3) MUTATED" 
                    TCGA-CG-4440                     TCGA-CG-4441 
  "DEL PEAK 39(19P13.3) MUTATED" "DEL PEAK 39(19P13.3) WILD-TYPE" 
                    TCGA-CG-4443                     TCGA-CG-4444 
  "DEL PEAK 39(19P13.3) MUTATED" "DEL PEAK 39(19P13.3) WILD-TYPE" 
                    TCGA-CG-4449                     TCGA-CG-4455 
  "DEL PEAK 39(19P13.3) MUTATED" "DEL PEAK 39(19P13.3) WILD-TYPE" 
                    TCGA-CG-4460                     TCGA-CG-4462 
  "DEL PEAK 39(19P13.3) MUTATED" "DEL PEAK 39(19P13.3) WILD-TYPE" 
                    TCGA-CG-4465                     TCGA-CG-4466 
"DEL PEAK 39(19P13.3) WILD-TYPE"   "DEL PEAK 39(19P13.3) MUTATED" 
                    TCGA-CG-4469                     TCGA-CG-4472 
"DEL PEAK 39(19P13.3) WILD-TYPE" "DEL PEAK 39(19P13.3) WILD-TYPE" 
                    TCGA-CG-4474                     TCGA-CG-4477 
"DEL PEAK 39(19P13.3) WILD-TYPE" "DEL PEAK 39(19P13.3) WILD-TYPE" 
                    TCGA-CG-5716                     TCGA-CG-5717 
"DEL PEAK 39(19P13.3) WILD-TYPE" "DEL PEAK 39(19P13.3) WILD-TYPE" 
                    TCGA-CG-5718                     TCGA-CG-5719 
  "DEL PEAK 39(19P13.3) MUTATED" "DEL PEAK 39(19P13.3) WILD-TYPE" 
                    TCGA-CG-5720                     TCGA-CG-5721 
"DEL PEAK 39(19P13.3) WILD-TYPE" "DEL PEAK 39(19P13.3) WILD-TYPE" 
                    TCGA-CG-5722                     TCGA-CG-5723 
"DEL PEAK 39(19P13.3) WILD-TYPE" "DEL PEAK 39(19P13.3) WILD-TYPE" 
                    TCGA-CG-5724                     TCGA-CG-5725 
  "DEL PEAK 39(19P13.3) MUTATED"   "DEL PEAK 39(19P13.3) MUTATED" 
                    TCGA-CG-5726                     TCGA-CG-5727 
"DEL PEAK 39(19P13.3) WILD-TYPE" "DEL PEAK 39(19P13.3) WILD-TYPE" 
                    TCGA-CG-5728                     TCGA-CG-5730 
"DEL PEAK 39(19P13.3) WILD-TYPE"   "DEL PEAK 39(19P13.3) MUTATED" 
                    TCGA-CG-5732                     TCGA-CG-5733 
  "DEL PEAK 39(19P13.3) MUTATED" "DEL PEAK 39(19P13.3) WILD-TYPE" 
                    TCGA-CG-5734                     TCGA-D7-5577 
"DEL PEAK 39(19P13.3) WILD-TYPE" "DEL PEAK 39(19P13.3) WILD-TYPE" 
                    TCGA-D7-5578                     TCGA-D7-5579 
  "DEL PEAK 39(19P13.3) MUTATED" "DEL PEAK 39(19P13.3) WILD-TYPE" 
                    TCGA-D7-6518                     TCGA-D7-6519 
"DEL PEAK 39(19P13.3) WILD-TYPE" "DEL PEAK 39(19P13.3) WILD-TYPE" 
                    TCGA-D7-6520                     TCGA-D7-6521 
  "DEL PEAK 39(19P13.3) MUTATED" "DEL PEAK 39(19P13.3) WILD-TYPE" 
                    TCGA-D7-6522                     TCGA-D7-6524 
"DEL PEAK 39(19P13.3) WILD-TYPE" "DEL PEAK 39(19P13.3) WILD-TYPE" 
                    TCGA-D7-6525                     TCGA-D7-6526 
  "DEL PEAK 39(19P13.3) MUTATED"   "DEL PEAK 39(19P13.3) MUTATED" 
                    TCGA-D7-6527                     TCGA-D7-6528 
  "DEL PEAK 39(19P13.3) MUTATED" "DEL PEAK 39(19P13.3) WILD-TYPE" 
                    TCGA-D7-6815                     TCGA-D7-6817 
  "DEL PEAK 39(19P13.3) MUTATED"   "DEL PEAK 39(19P13.3) MUTATED" 
                    TCGA-D7-6818                     TCGA-D7-6820 
  "DEL PEAK 39(19P13.3) MUTATED"   "DEL PEAK 39(19P13.3) MUTATED" 
                    TCGA-D7-6822                     TCGA-EQ-5647 
"DEL PEAK 39(19P13.3) WILD-TYPE" "DEL PEAK 39(19P13.3) WILD-TYPE" 
                    TCGA-EQ-8122                     TCGA-F1-6177 
"DEL PEAK 39(19P13.3) WILD-TYPE" "DEL PEAK 39(19P13.3) WILD-TYPE" 
                    TCGA-F1-6874                     TCGA-F1-6875 
"DEL PEAK 39(19P13.3) WILD-TYPE"   "DEL PEAK 39(19P13.3) MUTATED" 
                    TCGA-FP-7735                     TCGA-FP-7829 
"DEL PEAK 39(19P13.3) WILD-TYPE" "DEL PEAK 39(19P13.3) WILD-TYPE" 
                    TCGA-FP-7916                     TCGA-FP-7998 
  "DEL PEAK 39(19P13.3) MUTATED" "DEL PEAK 39(19P13.3) WILD-TYPE" 
                    TCGA-HJ-7597                     TCGA-IN-7806 
"DEL PEAK 39(19P13.3) WILD-TYPE"   "DEL PEAK 39(19P13.3) MUTATED" 
                    TCGA-IN-7808                     TCGA-IP-7968 
"DEL PEAK 39(19P13.3) WILD-TYPE"   "DEL PEAK 39(19P13.3) MUTATED" 
[1] "hr=" "2.3"
D65V2, continuous
D65V3, binary
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  DEL PEAK 39(19P13.3) MUTATED     14   35
  DEL PEAK 39(19P13.3) WILD-TYPE   51   61
        clus
vv       DEL PEAK 39(19P13.3) MUTATED DEL PEAK 39(19P13.3) WILD-TYPE
  FEMALE                           14                             51
  MALE                             35                             61
D65V4, multiclass
D65V5, multiclass
    clus
vv   DEL PEAK 39(19P13.3) MUTATED DEL PEAK 39(19P13.3) WILD-TYPE
  T1                            1                              5
  T2                           19                             34
  T3                           20                             39
  T4                            5                             28
D65V6, multiclass
    clus
vv   DEL PEAK 39(19P13.3) MUTATED DEL PEAK 39(19P13.3) WILD-TYPE
  N0                           12                             38
  N1                           16                             41
  N2                            9                             15
  N3                            8                             11
D65V7, multiclass
    clus
vv   DEL PEAK 39(19P13.3) MUTATED DEL PEAK 39(19P13.3) WILD-TYPE
  M0                           41                             91
  M1                            4                             14
  MX                            4                              7
D65V8, multiclass
     clus
vv    DEL PEAK 39(19P13.3) MUTATED DEL PEAK 39(19P13.3) WILD-TYPE
  I                              7                             18
  II                            14                             29
  III                           14                             34
  IV                             9                             20
D65V9, binary
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  DEL PEAK 39(19P13.3) MUTATED     45    4
  DEL PEAK 39(19P13.3) WILD-TYPE  111    1
     clus
vv    DEL PEAK 39(19P13.3) MUTATED DEL PEAK 39(19P13.3) WILD-TYPE
  NO                             4                              1
  YES                           45                            111

Clustering(66) Variable = Del Peak 40(19q13.11) mutation analysis
D66V1, survival
                     TCGA-B7-5816                      TCGA-B7-5818 
"DEL PEAK 40(19Q13.11) WILD-TYPE" "DEL PEAK 40(19Q13.11) WILD-TYPE" 
                     TCGA-BR-6452                      TCGA-BR-6455 
"DEL PEAK 40(19Q13.11) WILD-TYPE" "DEL PEAK 40(19Q13.11) WILD-TYPE" 
                     TCGA-BR-6457                      TCGA-BR-6458 
"DEL PEAK 40(19Q13.11) WILD-TYPE" "DEL PEAK 40(19Q13.11) WILD-TYPE" 
                     TCGA-BR-6563                      TCGA-BR-6564 
"DEL PEAK 40(19Q13.11) WILD-TYPE" "DEL PEAK 40(19Q13.11) WILD-TYPE" 
                     TCGA-BR-6565                      TCGA-BR-6566 
"DEL PEAK 40(19Q13.11) WILD-TYPE" "DEL PEAK 40(19Q13.11) WILD-TYPE" 
                     TCGA-BR-6705                      TCGA-BR-6706 
"DEL PEAK 40(19Q13.11) WILD-TYPE" "DEL PEAK 40(19Q13.11) WILD-TYPE" 
                     TCGA-BR-6707                      TCGA-BR-6709 
"DEL PEAK 40(19Q13.11) WILD-TYPE" "DEL PEAK 40(19Q13.11) WILD-TYPE" 
                     TCGA-BR-6710                      TCGA-BR-6801 
"DEL PEAK 40(19Q13.11) WILD-TYPE" "DEL PEAK 40(19Q13.11) WILD-TYPE" 
                     TCGA-BR-6802                      TCGA-BR-6803 
"DEL PEAK 40(19Q13.11) WILD-TYPE" "DEL PEAK 40(19Q13.11) WILD-TYPE" 
                     TCGA-BR-6852                      TCGA-BR-7196 
"DEL PEAK 40(19Q13.11) WILD-TYPE" "DEL PEAK 40(19Q13.11) WILD-TYPE" 
                     TCGA-BR-7197                      TCGA-BR-7703 
  "DEL PEAK 40(19Q13.11) MUTATED" "DEL PEAK 40(19Q13.11) WILD-TYPE" 
                     TCGA-BR-7704                      TCGA-BR-7707 
"DEL PEAK 40(19Q13.11) WILD-TYPE" "DEL PEAK 40(19Q13.11) WILD-TYPE" 
                     TCGA-BR-7715                      TCGA-BR-7716 
  "DEL PEAK 40(19Q13.11) MUTATED" "DEL PEAK 40(19Q13.11) WILD-TYPE" 
                     TCGA-BR-7717                      TCGA-BR-7722 
"DEL PEAK 40(19Q13.11) WILD-TYPE" "DEL PEAK 40(19Q13.11) WILD-TYPE" 
                     TCGA-BR-7723                      TCGA-BR-7851 
  "DEL PEAK 40(19Q13.11) MUTATED" "DEL PEAK 40(19Q13.11) WILD-TYPE" 
                     TCGA-BR-7901                      TCGA-BR-7957 
  "DEL PEAK 40(19Q13.11) MUTATED" "DEL PEAK 40(19Q13.11) WILD-TYPE" 
                     TCGA-BR-7958                      TCGA-BR-7959 
"DEL PEAK 40(19Q13.11) WILD-TYPE" "DEL PEAK 40(19Q13.11) WILD-TYPE" 
                     TCGA-BR-8059                      TCGA-BR-8060 
"DEL PEAK 40(19Q13.11) WILD-TYPE" "DEL PEAK 40(19Q13.11) WILD-TYPE" 
                     TCGA-BR-8077                      TCGA-BR-8078 
"DEL PEAK 40(19Q13.11) WILD-TYPE" "DEL PEAK 40(19Q13.11) WILD-TYPE" 
                     TCGA-BR-8080                      TCGA-BR-8081 
"DEL PEAK 40(19Q13.11) WILD-TYPE" "DEL PEAK 40(19Q13.11) WILD-TYPE" 
                     TCGA-BR-8284                      TCGA-BR-8285 
"DEL PEAK 40(19Q13.11) WILD-TYPE" "DEL PEAK 40(19Q13.11) WILD-TYPE" 
                     TCGA-BR-8286                      TCGA-BR-8289 
"DEL PEAK 40(19Q13.11) WILD-TYPE" "DEL PEAK 40(19Q13.11) WILD-TYPE" 
                     TCGA-BR-8291                      TCGA-BR-8295 
"DEL PEAK 40(19Q13.11) WILD-TYPE" "DEL PEAK 40(19Q13.11) WILD-TYPE" 
                     TCGA-BR-8296                      TCGA-BR-8297 
"DEL PEAK 40(19Q13.11) WILD-TYPE" "DEL PEAK 40(19Q13.11) WILD-TYPE" 
                     TCGA-CD-5798                      TCGA-CD-5799 
"DEL PEAK 40(19Q13.11) WILD-TYPE"   "DEL PEAK 40(19Q13.11) MUTATED" 
                     TCGA-CD-5800                      TCGA-CD-5801 
  "DEL PEAK 40(19Q13.11) MUTATED" "DEL PEAK 40(19Q13.11) WILD-TYPE" 
                     TCGA-CD-5802                      TCGA-CD-5803 
"DEL PEAK 40(19Q13.11) WILD-TYPE" "DEL PEAK 40(19Q13.11) WILD-TYPE" 
                     TCGA-CG-4300                      TCGA-CG-4301 
  "DEL PEAK 40(19Q13.11) MUTATED" "DEL PEAK 40(19Q13.11) WILD-TYPE" 
                     TCGA-CG-4304                      TCGA-CG-4305 
  "DEL PEAK 40(19Q13.11) MUTATED" "DEL PEAK 40(19Q13.11) WILD-TYPE" 
                     TCGA-CG-4306                      TCGA-CG-4436 
"DEL PEAK 40(19Q13.11) WILD-TYPE" "DEL PEAK 40(19Q13.11) WILD-TYPE" 
                     TCGA-CG-4437                      TCGA-CG-4438 
"DEL PEAK 40(19Q13.11) WILD-TYPE" "DEL PEAK 40(19Q13.11) WILD-TYPE" 
                     TCGA-CG-4440                      TCGA-CG-4441 
  "DEL PEAK 40(19Q13.11) MUTATED" "DEL PEAK 40(19Q13.11) WILD-TYPE" 
                     TCGA-CG-4443                      TCGA-CG-4444 
"DEL PEAK 40(19Q13.11) WILD-TYPE" "DEL PEAK 40(19Q13.11) WILD-TYPE" 
                     TCGA-CG-4449                      TCGA-CG-4455 
"DEL PEAK 40(19Q13.11) WILD-TYPE" "DEL PEAK 40(19Q13.11) WILD-TYPE" 
                     TCGA-CG-4460                      TCGA-CG-4462 
"DEL PEAK 40(19Q13.11) WILD-TYPE" "DEL PEAK 40(19Q13.11) WILD-TYPE" 
                     TCGA-CG-4465                      TCGA-CG-4466 
"DEL PEAK 40(19Q13.11) WILD-TYPE"   "DEL PEAK 40(19Q13.11) MUTATED" 
                     TCGA-CG-4469                      TCGA-CG-4472 
"DEL PEAK 40(19Q13.11) WILD-TYPE" "DEL PEAK 40(19Q13.11) WILD-TYPE" 
                     TCGA-CG-4474                      TCGA-CG-4477 
"DEL PEAK 40(19Q13.11) WILD-TYPE" "DEL PEAK 40(19Q13.11) WILD-TYPE" 
                     TCGA-CG-5716                      TCGA-CG-5717 
"DEL PEAK 40(19Q13.11) WILD-TYPE" "DEL PEAK 40(19Q13.11) WILD-TYPE" 
                     TCGA-CG-5718                      TCGA-CG-5719 
"DEL PEAK 40(19Q13.11) WILD-TYPE" "DEL PEAK 40(19Q13.11) WILD-TYPE" 
                     TCGA-CG-5720                      TCGA-CG-5721 
"DEL PEAK 40(19Q13.11) WILD-TYPE" "DEL PEAK 40(19Q13.11) WILD-TYPE" 
                     TCGA-CG-5722                      TCGA-CG-5723 
"DEL PEAK 40(19Q13.11) WILD-TYPE" "DEL PEAK 40(19Q13.11) WILD-TYPE" 
                     TCGA-CG-5724                      TCGA-CG-5725 
  "DEL PEAK 40(19Q13.11) MUTATED" "DEL PEAK 40(19Q13.11) WILD-TYPE" 
                     TCGA-CG-5726                      TCGA-CG-5727 
"DEL PEAK 40(19Q13.11) WILD-TYPE" "DEL PEAK 40(19Q13.11) WILD-TYPE" 
                     TCGA-CG-5728                      TCGA-CG-5730 
"DEL PEAK 40(19Q13.11) WILD-TYPE" "DEL PEAK 40(19Q13.11) WILD-TYPE" 
                     TCGA-CG-5732                      TCGA-CG-5733 
"DEL PEAK 40(19Q13.11) WILD-TYPE" "DEL PEAK 40(19Q13.11) WILD-TYPE" 
                     TCGA-CG-5734                      TCGA-D7-5577 
"DEL PEAK 40(19Q13.11) WILD-TYPE" "DEL PEAK 40(19Q13.11) WILD-TYPE" 
                     TCGA-D7-5578                      TCGA-D7-5579 
"DEL PEAK 40(19Q13.11) WILD-TYPE" "DEL PEAK 40(19Q13.11) WILD-TYPE" 
                     TCGA-D7-6518                      TCGA-D7-6519 
"DEL PEAK 40(19Q13.11) WILD-TYPE" "DEL PEAK 40(19Q13.11) WILD-TYPE" 
                     TCGA-D7-6520                      TCGA-D7-6521 
"DEL PEAK 40(19Q13.11) WILD-TYPE" "DEL PEAK 40(19Q13.11) WILD-TYPE" 
                     TCGA-D7-6522                      TCGA-D7-6524 
"DEL PEAK 40(19Q13.11) WILD-TYPE" "DEL PEAK 40(19Q13.11) WILD-TYPE" 
                     TCGA-D7-6525                      TCGA-D7-6526 
"DEL PEAK 40(19Q13.11) WILD-TYPE"   "DEL PEAK 40(19Q13.11) MUTATED" 
                     TCGA-D7-6527                      TCGA-D7-6528 
  "DEL PEAK 40(19Q13.11) MUTATED"   "DEL PEAK 40(19Q13.11) MUTATED" 
                     TCGA-D7-6815                      TCGA-D7-6817 
"DEL PEAK 40(19Q13.11) WILD-TYPE"   "DEL PEAK 40(19Q13.11) MUTATED" 
                     TCGA-D7-6818                      TCGA-D7-6820 
"DEL PEAK 40(19Q13.11) WILD-TYPE"   "DEL PEAK 40(19Q13.11) MUTATED" 
                     TCGA-D7-6822                      TCGA-EQ-5647 
"DEL PEAK 40(19Q13.11) WILD-TYPE"   "DEL PEAK 40(19Q13.11) MUTATED" 
                     TCGA-EQ-8122                      TCGA-F1-6177 
"DEL PEAK 40(19Q13.11) WILD-TYPE" "DEL PEAK 40(19Q13.11) WILD-TYPE" 
                     TCGA-F1-6874                      TCGA-F1-6875 
"DEL PEAK 40(19Q13.11) WILD-TYPE" "DEL PEAK 40(19Q13.11) WILD-TYPE" 
                     TCGA-FP-7735                      TCGA-FP-7829 
"DEL PEAK 40(19Q13.11) WILD-TYPE" "DEL PEAK 40(19Q13.11) WILD-TYPE" 
                     TCGA-FP-7916                      TCGA-FP-7998 
"DEL PEAK 40(19Q13.11) WILD-TYPE" "DEL PEAK 40(19Q13.11) WILD-TYPE" 
                     TCGA-HJ-7597                      TCGA-IN-7806 
"DEL PEAK 40(19Q13.11) WILD-TYPE" "DEL PEAK 40(19Q13.11) WILD-TYPE" 
                     TCGA-IN-7808                      TCGA-IP-7968 
"DEL PEAK 40(19Q13.11) WILD-TYPE" "DEL PEAK 40(19Q13.11) WILD-TYPE" 
                     TCGA-B7-5816                      TCGA-B7-5818 
"DEL PEAK 40(19Q13.11) WILD-TYPE" "DEL PEAK 40(19Q13.11) WILD-TYPE" 
                     TCGA-BR-6452                      TCGA-BR-6455 
"DEL PEAK 40(19Q13.11) WILD-TYPE" "DEL PEAK 40(19Q13.11) WILD-TYPE" 
                     TCGA-BR-6457                      TCGA-BR-6458 
"DEL PEAK 40(19Q13.11) WILD-TYPE" "DEL PEAK 40(19Q13.11) WILD-TYPE" 
                     TCGA-BR-6563                      TCGA-BR-6564 
"DEL PEAK 40(19Q13.11) WILD-TYPE" "DEL PEAK 40(19Q13.11) WILD-TYPE" 
                     TCGA-BR-6565                      TCGA-BR-6566 
"DEL PEAK 40(19Q13.11) WILD-TYPE" "DEL PEAK 40(19Q13.11) WILD-TYPE" 
                     TCGA-BR-6705                      TCGA-BR-6706 
"DEL PEAK 40(19Q13.11) WILD-TYPE" "DEL PEAK 40(19Q13.11) WILD-TYPE" 
                     TCGA-BR-6707                      TCGA-BR-6709 
"DEL PEAK 40(19Q13.11) WILD-TYPE" "DEL PEAK 40(19Q13.11) WILD-TYPE" 
                     TCGA-BR-6710                      TCGA-BR-6801 
"DEL PEAK 40(19Q13.11) WILD-TYPE" "DEL PEAK 40(19Q13.11) WILD-TYPE" 
                     TCGA-BR-6802                      TCGA-BR-6803 
"DEL PEAK 40(19Q13.11) WILD-TYPE" "DEL PEAK 40(19Q13.11) WILD-TYPE" 
                     TCGA-BR-6852                      TCGA-BR-7196 
"DEL PEAK 40(19Q13.11) WILD-TYPE" "DEL PEAK 40(19Q13.11) WILD-TYPE" 
                     TCGA-BR-7197                      TCGA-BR-7703 
  "DEL PEAK 40(19Q13.11) MUTATED" "DEL PEAK 40(19Q13.11) WILD-TYPE" 
                     TCGA-BR-7704                      TCGA-BR-7707 
"DEL PEAK 40(19Q13.11) WILD-TYPE" "DEL PEAK 40(19Q13.11) WILD-TYPE" 
                     TCGA-BR-7715                      TCGA-BR-7716 
  "DEL PEAK 40(19Q13.11) MUTATED" "DEL PEAK 40(19Q13.11) WILD-TYPE" 
                     TCGA-BR-7717                      TCGA-BR-7722 
"DEL PEAK 40(19Q13.11) WILD-TYPE" "DEL PEAK 40(19Q13.11) WILD-TYPE" 
                     TCGA-BR-7723                      TCGA-BR-7851 
  "DEL PEAK 40(19Q13.11) MUTATED" "DEL PEAK 40(19Q13.11) WILD-TYPE" 
                     TCGA-BR-7901                      TCGA-BR-7957 
  "DEL PEAK 40(19Q13.11) MUTATED" "DEL PEAK 40(19Q13.11) WILD-TYPE" 
                     TCGA-BR-7958                      TCGA-BR-7959 
"DEL PEAK 40(19Q13.11) WILD-TYPE" "DEL PEAK 40(19Q13.11) WILD-TYPE" 
                     TCGA-BR-8059                      TCGA-BR-8060 
"DEL PEAK 40(19Q13.11) WILD-TYPE" "DEL PEAK 40(19Q13.11) WILD-TYPE" 
                     TCGA-BR-8077                      TCGA-BR-8078 
"DEL PEAK 40(19Q13.11) WILD-TYPE" "DEL PEAK 40(19Q13.11) WILD-TYPE" 
                     TCGA-BR-8080                      TCGA-BR-8081 
"DEL PEAK 40(19Q13.11) WILD-TYPE" "DEL PEAK 40(19Q13.11) WILD-TYPE" 
                     TCGA-BR-8284                      TCGA-BR-8285 
"DEL PEAK 40(19Q13.11) WILD-TYPE" "DEL PEAK 40(19Q13.11) WILD-TYPE" 
                     TCGA-BR-8286                      TCGA-BR-8289 
"DEL PEAK 40(19Q13.11) WILD-TYPE" "DEL PEAK 40(19Q13.11) WILD-TYPE" 
                     TCGA-BR-8291                      TCGA-BR-8295 
"DEL PEAK 40(19Q13.11) WILD-TYPE" "DEL PEAK 40(19Q13.11) WILD-TYPE" 
                     TCGA-BR-8296                      TCGA-BR-8297 
"DEL PEAK 40(19Q13.11) WILD-TYPE" "DEL PEAK 40(19Q13.11) WILD-TYPE" 
                     TCGA-CD-5798                      TCGA-CD-5799 
"DEL PEAK 40(19Q13.11) WILD-TYPE"   "DEL PEAK 40(19Q13.11) MUTATED" 
                     TCGA-CD-5800                      TCGA-CD-5801 
  "DEL PEAK 40(19Q13.11) MUTATED" "DEL PEAK 40(19Q13.11) WILD-TYPE" 
                     TCGA-CD-5802                      TCGA-CD-5803 
"DEL PEAK 40(19Q13.11) WILD-TYPE" "DEL PEAK 40(19Q13.11) WILD-TYPE" 
                     TCGA-CG-4300                      TCGA-CG-4301 
  "DEL PEAK 40(19Q13.11) MUTATED" "DEL PEAK 40(19Q13.11) WILD-TYPE" 
                     TCGA-CG-4304                      TCGA-CG-4305 
  "DEL PEAK 40(19Q13.11) MUTATED" "DEL PEAK 40(19Q13.11) WILD-TYPE" 
                     TCGA-CG-4306                      TCGA-CG-4436 
"DEL PEAK 40(19Q13.11) WILD-TYPE" "DEL PEAK 40(19Q13.11) WILD-TYPE" 
                     TCGA-CG-4437                      TCGA-CG-4438 
"DEL PEAK 40(19Q13.11) WILD-TYPE" "DEL PEAK 40(19Q13.11) WILD-TYPE" 
                     TCGA-CG-4440                      TCGA-CG-4441 
  "DEL PEAK 40(19Q13.11) MUTATED" "DEL PEAK 40(19Q13.11) WILD-TYPE" 
                     TCGA-CG-4443                      TCGA-CG-4444 
"DEL PEAK 40(19Q13.11) WILD-TYPE" "DEL PEAK 40(19Q13.11) WILD-TYPE" 
                     TCGA-CG-4449                      TCGA-CG-4455 
"DEL PEAK 40(19Q13.11) WILD-TYPE" "DEL PEAK 40(19Q13.11) WILD-TYPE" 
                     TCGA-CG-4460                      TCGA-CG-4462 
"DEL PEAK 40(19Q13.11) WILD-TYPE" "DEL PEAK 40(19Q13.11) WILD-TYPE" 
                     TCGA-CG-4465                      TCGA-CG-4466 
"DEL PEAK 40(19Q13.11) WILD-TYPE"   "DEL PEAK 40(19Q13.11) MUTATED" 
                     TCGA-CG-4469                      TCGA-CG-4472 
"DEL PEAK 40(19Q13.11) WILD-TYPE" "DEL PEAK 40(19Q13.11) WILD-TYPE" 
                     TCGA-CG-4474                      TCGA-CG-4477 
"DEL PEAK 40(19Q13.11) WILD-TYPE" "DEL PEAK 40(19Q13.11) WILD-TYPE" 
                     TCGA-CG-5716                      TCGA-CG-5717 
"DEL PEAK 40(19Q13.11) WILD-TYPE" "DEL PEAK 40(19Q13.11) WILD-TYPE" 
                     TCGA-CG-5718                      TCGA-CG-5719 
"DEL PEAK 40(19Q13.11) WILD-TYPE" "DEL PEAK 40(19Q13.11) WILD-TYPE" 
                     TCGA-CG-5720                      TCGA-CG-5721 
"DEL PEAK 40(19Q13.11) WILD-TYPE" "DEL PEAK 40(19Q13.11) WILD-TYPE" 
                     TCGA-CG-5722                      TCGA-CG-5723 
"DEL PEAK 40(19Q13.11) WILD-TYPE" "DEL PEAK 40(19Q13.11) WILD-TYPE" 
                     TCGA-CG-5724                      TCGA-CG-5725 
  "DEL PEAK 40(19Q13.11) MUTATED" "DEL PEAK 40(19Q13.11) WILD-TYPE" 
                     TCGA-CG-5726                      TCGA-CG-5727 
"DEL PEAK 40(19Q13.11) WILD-TYPE" "DEL PEAK 40(19Q13.11) WILD-TYPE" 
                     TCGA-CG-5728                      TCGA-CG-5730 
"DEL PEAK 40(19Q13.11) WILD-TYPE" "DEL PEAK 40(19Q13.11) WILD-TYPE" 
                     TCGA-CG-5732                      TCGA-CG-5733 
"DEL PEAK 40(19Q13.11) WILD-TYPE" "DEL PEAK 40(19Q13.11) WILD-TYPE" 
                     TCGA-CG-5734                      TCGA-D7-5577 
"DEL PEAK 40(19Q13.11) WILD-TYPE" "DEL PEAK 40(19Q13.11) WILD-TYPE" 
                     TCGA-D7-5578                      TCGA-D7-5579 
"DEL PEAK 40(19Q13.11) WILD-TYPE" "DEL PEAK 40(19Q13.11) WILD-TYPE" 
                     TCGA-D7-6518                      TCGA-D7-6519 
"DEL PEAK 40(19Q13.11) WILD-TYPE" "DEL PEAK 40(19Q13.11) WILD-TYPE" 
                     TCGA-D7-6520                      TCGA-D7-6521 
"DEL PEAK 40(19Q13.11) WILD-TYPE" "DEL PEAK 40(19Q13.11) WILD-TYPE" 
                     TCGA-D7-6522                      TCGA-D7-6524 
"DEL PEAK 40(19Q13.11) WILD-TYPE" "DEL PEAK 40(19Q13.11) WILD-TYPE" 
                     TCGA-D7-6525                      TCGA-D7-6526 
"DEL PEAK 40(19Q13.11) WILD-TYPE"   "DEL PEAK 40(19Q13.11) MUTATED" 
                     TCGA-D7-6527                      TCGA-D7-6528 
  "DEL PEAK 40(19Q13.11) MUTATED"   "DEL PEAK 40(19Q13.11) MUTATED" 
                     TCGA-D7-6815                      TCGA-D7-6817 
"DEL PEAK 40(19Q13.11) WILD-TYPE"   "DEL PEAK 40(19Q13.11) MUTATED" 
                     TCGA-D7-6818                      TCGA-D7-6820 
"DEL PEAK 40(19Q13.11) WILD-TYPE"   "DEL PEAK 40(19Q13.11) MUTATED" 
                     TCGA-D7-6822                      TCGA-EQ-5647 
"DEL PEAK 40(19Q13.11) WILD-TYPE"   "DEL PEAK 40(19Q13.11) MUTATED" 
                     TCGA-EQ-8122                      TCGA-F1-6177 
"DEL PEAK 40(19Q13.11) WILD-TYPE" "DEL PEAK 40(19Q13.11) WILD-TYPE" 
                     TCGA-F1-6874                      TCGA-F1-6875 
"DEL PEAK 40(19Q13.11) WILD-TYPE" "DEL PEAK 40(19Q13.11) WILD-TYPE" 
                     TCGA-FP-7735                      TCGA-FP-7829 
"DEL PEAK 40(19Q13.11) WILD-TYPE" "DEL PEAK 40(19Q13.11) WILD-TYPE" 
                     TCGA-FP-7916                      TCGA-FP-7998 
"DEL PEAK 40(19Q13.11) WILD-TYPE" "DEL PEAK 40(19Q13.11) WILD-TYPE" 
                     TCGA-HJ-7597                      TCGA-IN-7806 
"DEL PEAK 40(19Q13.11) WILD-TYPE" "DEL PEAK 40(19Q13.11) WILD-TYPE" 
                     TCGA-IN-7808                      TCGA-IP-7968 
"DEL PEAK 40(19Q13.11) WILD-TYPE" "DEL PEAK 40(19Q13.11) WILD-TYPE" 
                     TCGA-B7-5816                      TCGA-B7-5818 
"DEL PEAK 40(19Q13.11) WILD-TYPE" "DEL PEAK 40(19Q13.11) WILD-TYPE" 
                     TCGA-BR-6452                      TCGA-BR-6455 
"DEL PEAK 40(19Q13.11) WILD-TYPE" "DEL PEAK 40(19Q13.11) WILD-TYPE" 
                     TCGA-BR-6457                      TCGA-BR-6458 
"DEL PEAK 40(19Q13.11) WILD-TYPE" "DEL PEAK 40(19Q13.11) WILD-TYPE" 
                     TCGA-BR-6563                      TCGA-BR-6564 
"DEL PEAK 40(19Q13.11) WILD-TYPE" "DEL PEAK 40(19Q13.11) WILD-TYPE" 
                     TCGA-BR-6565                      TCGA-BR-6566 
"DEL PEAK 40(19Q13.11) WILD-TYPE" "DEL PEAK 40(19Q13.11) WILD-TYPE" 
                     TCGA-BR-6705                      TCGA-BR-6706 
"DEL PEAK 40(19Q13.11) WILD-TYPE" "DEL PEAK 40(19Q13.11) WILD-TYPE" 
                     TCGA-BR-6707                      TCGA-BR-6709 
"DEL PEAK 40(19Q13.11) WILD-TYPE" "DEL PEAK 40(19Q13.11) WILD-TYPE" 
                     TCGA-BR-6710                      TCGA-BR-6801 
"DEL PEAK 40(19Q13.11) WILD-TYPE" "DEL PEAK 40(19Q13.11) WILD-TYPE" 
                     TCGA-BR-6802                      TCGA-BR-6803 
"DEL PEAK 40(19Q13.11) WILD-TYPE" "DEL PEAK 40(19Q13.11) WILD-TYPE" 
                     TCGA-BR-6852                      TCGA-BR-7196 
"DEL PEAK 40(19Q13.11) WILD-TYPE" "DEL PEAK 40(19Q13.11) WILD-TYPE" 
                     TCGA-BR-7197                      TCGA-BR-7703 
  "DEL PEAK 40(19Q13.11) MUTATED" "DEL PEAK 40(19Q13.11) WILD-TYPE" 
                     TCGA-BR-7704                      TCGA-BR-7707 
"DEL PEAK 40(19Q13.11) WILD-TYPE" "DEL PEAK 40(19Q13.11) WILD-TYPE" 
                     TCGA-BR-7715                      TCGA-BR-7716 
  "DEL PEAK 40(19Q13.11) MUTATED" "DEL PEAK 40(19Q13.11) WILD-TYPE" 
                     TCGA-BR-7717                      TCGA-BR-7722 
"DEL PEAK 40(19Q13.11) WILD-TYPE" "DEL PEAK 40(19Q13.11) WILD-TYPE" 
                     TCGA-BR-7723                      TCGA-BR-7851 
  "DEL PEAK 40(19Q13.11) MUTATED" "DEL PEAK 40(19Q13.11) WILD-TYPE" 
                     TCGA-BR-7901                      TCGA-BR-7957 
  "DEL PEAK 40(19Q13.11) MUTATED" "DEL PEAK 40(19Q13.11) WILD-TYPE" 
                     TCGA-BR-7958                      TCGA-BR-7959 
"DEL PEAK 40(19Q13.11) WILD-TYPE" "DEL PEAK 40(19Q13.11) WILD-TYPE" 
                     TCGA-BR-8059                      TCGA-BR-8060 
"DEL PEAK 40(19Q13.11) WILD-TYPE" "DEL PEAK 40(19Q13.11) WILD-TYPE" 
                     TCGA-BR-8077                      TCGA-BR-8078 
"DEL PEAK 40(19Q13.11) WILD-TYPE" "DEL PEAK 40(19Q13.11) WILD-TYPE" 
                     TCGA-BR-8080                      TCGA-BR-8081 
"DEL PEAK 40(19Q13.11) WILD-TYPE" "DEL PEAK 40(19Q13.11) WILD-TYPE" 
                     TCGA-BR-8284                      TCGA-BR-8285 
"DEL PEAK 40(19Q13.11) WILD-TYPE" "DEL PEAK 40(19Q13.11) WILD-TYPE" 
                     TCGA-BR-8286                      TCGA-BR-8289 
"DEL PEAK 40(19Q13.11) WILD-TYPE" "DEL PEAK 40(19Q13.11) WILD-TYPE" 
                     TCGA-BR-8291                      TCGA-BR-8295 
"DEL PEAK 40(19Q13.11) WILD-TYPE" "DEL PEAK 40(19Q13.11) WILD-TYPE" 
                     TCGA-BR-8296                      TCGA-BR-8297 
"DEL PEAK 40(19Q13.11) WILD-TYPE" "DEL PEAK 40(19Q13.11) WILD-TYPE" 
                     TCGA-CD-5798                      TCGA-CD-5799 
"DEL PEAK 40(19Q13.11) WILD-TYPE"   "DEL PEAK 40(19Q13.11) MUTATED" 
                     TCGA-CD-5800                      TCGA-CD-5801 
  "DEL PEAK 40(19Q13.11) MUTATED" "DEL PEAK 40(19Q13.11) WILD-TYPE" 
                     TCGA-CD-5802                      TCGA-CD-5803 
"DEL PEAK 40(19Q13.11) WILD-TYPE" "DEL PEAK 40(19Q13.11) WILD-TYPE" 
                     TCGA-CG-4300                      TCGA-CG-4301 
  "DEL PEAK 40(19Q13.11) MUTATED" "DEL PEAK 40(19Q13.11) WILD-TYPE" 
                     TCGA-CG-4304                      TCGA-CG-4305 
  "DEL PEAK 40(19Q13.11) MUTATED" "DEL PEAK 40(19Q13.11) WILD-TYPE" 
                     TCGA-CG-4306                      TCGA-CG-4436 
"DEL PEAK 40(19Q13.11) WILD-TYPE" "DEL PEAK 40(19Q13.11) WILD-TYPE" 
                     TCGA-CG-4437                      TCGA-CG-4438 
"DEL PEAK 40(19Q13.11) WILD-TYPE" "DEL PEAK 40(19Q13.11) WILD-TYPE" 
                     TCGA-CG-4440                      TCGA-CG-4441 
  "DEL PEAK 40(19Q13.11) MUTATED" "DEL PEAK 40(19Q13.11) WILD-TYPE" 
                     TCGA-CG-4443                      TCGA-CG-4444 
"DEL PEAK 40(19Q13.11) WILD-TYPE" "DEL PEAK 40(19Q13.11) WILD-TYPE" 
                     TCGA-CG-4449                      TCGA-CG-4455 
"DEL PEAK 40(19Q13.11) WILD-TYPE" "DEL PEAK 40(19Q13.11) WILD-TYPE" 
                     TCGA-CG-4460                      TCGA-CG-4462 
"DEL PEAK 40(19Q13.11) WILD-TYPE" "DEL PEAK 40(19Q13.11) WILD-TYPE" 
                     TCGA-CG-4465                      TCGA-CG-4466 
"DEL PEAK 40(19Q13.11) WILD-TYPE"   "DEL PEAK 40(19Q13.11) MUTATED" 
                     TCGA-CG-4469                      TCGA-CG-4472 
"DEL PEAK 40(19Q13.11) WILD-TYPE" "DEL PEAK 40(19Q13.11) WILD-TYPE" 
                     TCGA-CG-4474                      TCGA-CG-4477 
"DEL PEAK 40(19Q13.11) WILD-TYPE" "DEL PEAK 40(19Q13.11) WILD-TYPE" 
                     TCGA-CG-5716                      TCGA-CG-5717 
"DEL PEAK 40(19Q13.11) WILD-TYPE" "DEL PEAK 40(19Q13.11) WILD-TYPE" 
                     TCGA-CG-5718                      TCGA-CG-5719 
"DEL PEAK 40(19Q13.11) WILD-TYPE" "DEL PEAK 40(19Q13.11) WILD-TYPE" 
                     TCGA-CG-5720                      TCGA-CG-5721 
"DEL PEAK 40(19Q13.11) WILD-TYPE" "DEL PEAK 40(19Q13.11) WILD-TYPE" 
                     TCGA-CG-5722                      TCGA-CG-5723 
"DEL PEAK 40(19Q13.11) WILD-TYPE" "DEL PEAK 40(19Q13.11) WILD-TYPE" 
                     TCGA-CG-5724                      TCGA-CG-5725 
  "DEL PEAK 40(19Q13.11) MUTATED" "DEL PEAK 40(19Q13.11) WILD-TYPE" 
                     TCGA-CG-5726                      TCGA-CG-5727 
"DEL PEAK 40(19Q13.11) WILD-TYPE" "DEL PEAK 40(19Q13.11) WILD-TYPE" 
                     TCGA-CG-5728                      TCGA-CG-5730 
"DEL PEAK 40(19Q13.11) WILD-TYPE" "DEL PEAK 40(19Q13.11) WILD-TYPE" 
                     TCGA-CG-5732                      TCGA-CG-5733 
"DEL PEAK 40(19Q13.11) WILD-TYPE" "DEL PEAK 40(19Q13.11) WILD-TYPE" 
                     TCGA-CG-5734                      TCGA-D7-5577 
"DEL PEAK 40(19Q13.11) WILD-TYPE" "DEL PEAK 40(19Q13.11) WILD-TYPE" 
                     TCGA-D7-5578                      TCGA-D7-5579 
"DEL PEAK 40(19Q13.11) WILD-TYPE" "DEL PEAK 40(19Q13.11) WILD-TYPE" 
                     TCGA-D7-6518                      TCGA-D7-6519 
"DEL PEAK 40(19Q13.11) WILD-TYPE" "DEL PEAK 40(19Q13.11) WILD-TYPE" 
                     TCGA-D7-6520                      TCGA-D7-6521 
"DEL PEAK 40(19Q13.11) WILD-TYPE" "DEL PEAK 40(19Q13.11) WILD-TYPE" 
                     TCGA-D7-6522                      TCGA-D7-6524 
"DEL PEAK 40(19Q13.11) WILD-TYPE" "DEL PEAK 40(19Q13.11) WILD-TYPE" 
                     TCGA-D7-6525                      TCGA-D7-6526 
"DEL PEAK 40(19Q13.11) WILD-TYPE"   "DEL PEAK 40(19Q13.11) MUTATED" 
                     TCGA-D7-6527                      TCGA-D7-6528 
  "DEL PEAK 40(19Q13.11) MUTATED"   "DEL PEAK 40(19Q13.11) MUTATED" 
                     TCGA-D7-6815                      TCGA-D7-6817 
"DEL PEAK 40(19Q13.11) WILD-TYPE"   "DEL PEAK 40(19Q13.11) MUTATED" 
                     TCGA-D7-6818                      TCGA-D7-6820 
"DEL PEAK 40(19Q13.11) WILD-TYPE"   "DEL PEAK 40(19Q13.11) MUTATED" 
                     TCGA-D7-6822                      TCGA-EQ-5647 
"DEL PEAK 40(19Q13.11) WILD-TYPE"   "DEL PEAK 40(19Q13.11) MUTATED" 
                     TCGA-EQ-8122                      TCGA-F1-6177 
"DEL PEAK 40(19Q13.11) WILD-TYPE" "DEL PEAK 40(19Q13.11) WILD-TYPE" 
                     TCGA-F1-6874                      TCGA-F1-6875 
"DEL PEAK 40(19Q13.11) WILD-TYPE" "DEL PEAK 40(19Q13.11) WILD-TYPE" 
                     TCGA-FP-7735                      TCGA-FP-7829 
"DEL PEAK 40(19Q13.11) WILD-TYPE" "DEL PEAK 40(19Q13.11) WILD-TYPE" 
                     TCGA-FP-7916                      TCGA-FP-7998 
"DEL PEAK 40(19Q13.11) WILD-TYPE" "DEL PEAK 40(19Q13.11) WILD-TYPE" 
                     TCGA-HJ-7597                      TCGA-IN-7806 
"DEL PEAK 40(19Q13.11) WILD-TYPE" "DEL PEAK 40(19Q13.11) WILD-TYPE" 
                     TCGA-IN-7808                      TCGA-IP-7968 
"DEL PEAK 40(19Q13.11) WILD-TYPE" "DEL PEAK 40(19Q13.11) WILD-TYPE" 
[1] "hr=" "1.8"
D66V2, continuous
D66V3, binary
[1] "tbl2"
                                 cls
clus                              [,1] [,2]
  DEL PEAK 40(19Q13.11) MUTATED      8   13
  DEL PEAK 40(19Q13.11) WILD-TYPE   57   83
        clus
vv       DEL PEAK 40(19Q13.11) MUTATED DEL PEAK 40(19Q13.11) WILD-TYPE
  FEMALE                             8                              57
  MALE                              13                              83
D66V4, multiclass
D66V5, multiclass
    clus
vv   DEL PEAK 40(19Q13.11) MUTATED DEL PEAK 40(19Q13.11) WILD-TYPE
  T1                             0                               6
  T2                             7                              46
  T3                            10                              49
  T4                             2                              31
D66V6, multiclass
    clus
vv   DEL PEAK 40(19Q13.11) MUTATED DEL PEAK 40(19Q13.11) WILD-TYPE
  N0                             6                              44
  N1                             5                              52
  N2                             3                              21
  N3                             5                              14
D66V7, multiclass
    clus
vv   DEL PEAK 40(19Q13.11) MUTATED DEL PEAK 40(19Q13.11) WILD-TYPE
  M0                            18                             114
  M1                             3                              15
  MX                             0                              11
D66V8, multiclass
     clus
vv    DEL PEAK 40(19Q13.11) MUTATED DEL PEAK 40(19Q13.11) WILD-TYPE
  I                               3                              22
  II                              7                              36
  III                             6                              42
  IV                              3                              26
D66V9, binary
[1] "tbl2"
                                 cls
clus                              [,1] [,2]
  DEL PEAK 40(19Q13.11) MUTATED     20    1
  DEL PEAK 40(19Q13.11) WILD-TYPE  136    4
     clus
vv    DEL PEAK 40(19Q13.11) MUTATED DEL PEAK 40(19Q13.11) WILD-TYPE
  NO                              1                               4
  YES                            20                             136

Clustering(67) Variable = Del Peak 41(20p12.1) mutation analysis
D67V1, survival
                    TCGA-B7-5816                     TCGA-B7-5818 
  "DEL PEAK 41(20P12.1) MUTATED" "DEL PEAK 41(20P12.1) WILD-TYPE" 
                    TCGA-BR-6452                     TCGA-BR-6455 
"DEL PEAK 41(20P12.1) WILD-TYPE" "DEL PEAK 41(20P12.1) WILD-TYPE" 
                    TCGA-BR-6457                     TCGA-BR-6458 
"DEL PEAK 41(20P12.1) WILD-TYPE" "DEL PEAK 41(20P12.1) WILD-TYPE" 
                    TCGA-BR-6563                     TCGA-BR-6564 
"DEL PEAK 41(20P12.1) WILD-TYPE"   "DEL PEAK 41(20P12.1) MUTATED" 
                    TCGA-BR-6565                     TCGA-BR-6566 
  "DEL PEAK 41(20P12.1) MUTATED" "DEL PEAK 41(20P12.1) WILD-TYPE" 
                    TCGA-BR-6705                     TCGA-BR-6706 
"DEL PEAK 41(20P12.1) WILD-TYPE" "DEL PEAK 41(20P12.1) WILD-TYPE" 
                    TCGA-BR-6707                     TCGA-BR-6709 
"DEL PEAK 41(20P12.1) WILD-TYPE" "DEL PEAK 41(20P12.1) WILD-TYPE" 
                    TCGA-BR-6710                     TCGA-BR-6801 
"DEL PEAK 41(20P12.1) WILD-TYPE" "DEL PEAK 41(20P12.1) WILD-TYPE" 
                    TCGA-BR-6802                     TCGA-BR-6803 
"DEL PEAK 41(20P12.1) WILD-TYPE" "DEL PEAK 41(20P12.1) WILD-TYPE" 
                    TCGA-BR-6852                     TCGA-BR-7196 
"DEL PEAK 41(20P12.1) WILD-TYPE" "DEL PEAK 41(20P12.1) WILD-TYPE" 
                    TCGA-BR-7197                     TCGA-BR-7703 
"DEL PEAK 41(20P12.1) WILD-TYPE" "DEL PEAK 41(20P12.1) WILD-TYPE" 
                    TCGA-BR-7704                     TCGA-BR-7707 
"DEL PEAK 41(20P12.1) WILD-TYPE" "DEL PEAK 41(20P12.1) WILD-TYPE" 
                    TCGA-BR-7715                     TCGA-BR-7716 
"DEL PEAK 41(20P12.1) WILD-TYPE" "DEL PEAK 41(20P12.1) WILD-TYPE" 
                    TCGA-BR-7717                     TCGA-BR-7722 
"DEL PEAK 41(20P12.1) WILD-TYPE" "DEL PEAK 41(20P12.1) WILD-TYPE" 
                    TCGA-BR-7723                     TCGA-BR-7851 
  "DEL PEAK 41(20P12.1) MUTATED" "DEL PEAK 41(20P12.1) WILD-TYPE" 
                    TCGA-BR-7901                     TCGA-BR-7957 
"DEL PEAK 41(20P12.1) WILD-TYPE" "DEL PEAK 41(20P12.1) WILD-TYPE" 
                    TCGA-BR-7958                     TCGA-BR-7959 
"DEL PEAK 41(20P12.1) WILD-TYPE" "DEL PEAK 41(20P12.1) WILD-TYPE" 
                    TCGA-BR-8059                     TCGA-BR-8060 
"DEL PEAK 41(20P12.1) WILD-TYPE" "DEL PEAK 41(20P12.1) WILD-TYPE" 
                    TCGA-BR-8077                     TCGA-BR-8078 
"DEL PEAK 41(20P12.1) WILD-TYPE" "DEL PEAK 41(20P12.1) WILD-TYPE" 
                    TCGA-BR-8080                     TCGA-BR-8081 
"DEL PEAK 41(20P12.1) WILD-TYPE" "DEL PEAK 41(20P12.1) WILD-TYPE" 
                    TCGA-BR-8284                     TCGA-BR-8285 
"DEL PEAK 41(20P12.1) WILD-TYPE" "DEL PEAK 41(20P12.1) WILD-TYPE" 
                    TCGA-BR-8286                     TCGA-BR-8289 
"DEL PEAK 41(20P12.1) WILD-TYPE" "DEL PEAK 41(20P12.1) WILD-TYPE" 
                    TCGA-BR-8291                     TCGA-BR-8295 
"DEL PEAK 41(20P12.1) WILD-TYPE" "DEL PEAK 41(20P12.1) WILD-TYPE" 
                    TCGA-BR-8296                     TCGA-BR-8297 
"DEL PEAK 41(20P12.1) WILD-TYPE" "DEL PEAK 41(20P12.1) WILD-TYPE" 
                    TCGA-CD-5798                     TCGA-CD-5799 
"DEL PEAK 41(20P12.1) WILD-TYPE" "DEL PEAK 41(20P12.1) WILD-TYPE" 
                    TCGA-CD-5800                     TCGA-CD-5801 
  "DEL PEAK 41(20P12.1) MUTATED" "DEL PEAK 41(20P12.1) WILD-TYPE" 
                    TCGA-CD-5802                     TCGA-CD-5803 
"DEL PEAK 41(20P12.1) WILD-TYPE" "DEL PEAK 41(20P12.1) WILD-TYPE" 
                    TCGA-CG-4300                     TCGA-CG-4301 
"DEL PEAK 41(20P12.1) WILD-TYPE"   "DEL PEAK 41(20P12.1) MUTATED" 
                    TCGA-CG-4304                     TCGA-CG-4305 
"DEL PEAK 41(20P12.1) WILD-TYPE" "DEL PEAK 41(20P12.1) WILD-TYPE" 
                    TCGA-CG-4306                     TCGA-CG-4436 
"DEL PEAK 41(20P12.1) WILD-TYPE" "DEL PEAK 41(20P12.1) WILD-TYPE" 
                    TCGA-CG-4437                     TCGA-CG-4438 
  "DEL PEAK 41(20P12.1) MUTATED"   "DEL PEAK 41(20P12.1) MUTATED" 
                    TCGA-CG-4440                     TCGA-CG-4441 
"DEL PEAK 41(20P12.1) WILD-TYPE"   "DEL PEAK 41(20P12.1) MUTATED" 
                    TCGA-CG-4443                     TCGA-CG-4444 
"DEL PEAK 41(20P12.1) WILD-TYPE" "DEL PEAK 41(20P12.1) WILD-TYPE" 
                    TCGA-CG-4449                     TCGA-CG-4455 
"DEL PEAK 41(20P12.1) WILD-TYPE" "DEL PEAK 41(20P12.1) WILD-TYPE" 
                    TCGA-CG-4460                     TCGA-CG-4462 
"DEL PEAK 41(20P12.1) WILD-TYPE" "DEL PEAK 41(20P12.1) WILD-TYPE" 
                    TCGA-CG-4465                     TCGA-CG-4466 
"DEL PEAK 41(20P12.1) WILD-TYPE" "DEL PEAK 41(20P12.1) WILD-TYPE" 
                    TCGA-CG-4469                     TCGA-CG-4472 
"DEL PEAK 41(20P12.1) WILD-TYPE"   "DEL PEAK 41(20P12.1) MUTATED" 
                    TCGA-CG-4474                     TCGA-CG-4477 
"DEL PEAK 41(20P12.1) WILD-TYPE" "DEL PEAK 41(20P12.1) WILD-TYPE" 
                    TCGA-CG-5716                     TCGA-CG-5717 
"DEL PEAK 41(20P12.1) WILD-TYPE"   "DEL PEAK 41(20P12.1) MUTATED" 
                    TCGA-CG-5718                     TCGA-CG-5719 
"DEL PEAK 41(20P12.1) WILD-TYPE" "DEL PEAK 41(20P12.1) WILD-TYPE" 
                    TCGA-CG-5720                     TCGA-CG-5721 
"DEL PEAK 41(20P12.1) WILD-TYPE" "DEL PEAK 41(20P12.1) WILD-TYPE" 
                    TCGA-CG-5722                     TCGA-CG-5723 
"DEL PEAK 41(20P12.1) WILD-TYPE" "DEL PEAK 41(20P12.1) WILD-TYPE" 
                    TCGA-CG-5724                     TCGA-CG-5725 
"DEL PEAK 41(20P12.1) WILD-TYPE"   "DEL PEAK 41(20P12.1) MUTATED" 
                    TCGA-CG-5726                     TCGA-CG-5727 
"DEL PEAK 41(20P12.1) WILD-TYPE" "DEL PEAK 41(20P12.1) WILD-TYPE" 
                    TCGA-CG-5728                     TCGA-CG-5730 
"DEL PEAK 41(20P12.1) WILD-TYPE" "DEL PEAK 41(20P12.1) WILD-TYPE" 
                    TCGA-CG-5732                     TCGA-CG-5733 
"DEL PEAK 41(20P12.1) WILD-TYPE" "DEL PEAK 41(20P12.1) WILD-TYPE" 
                    TCGA-CG-5734                     TCGA-D7-5577 
"DEL PEAK 41(20P12.1) WILD-TYPE" "DEL PEAK 41(20P12.1) WILD-TYPE" 
                    TCGA-D7-5578                     TCGA-D7-5579 
"DEL PEAK 41(20P12.1) WILD-TYPE" "DEL PEAK 41(20P12.1) WILD-TYPE" 
                    TCGA-D7-6518                     TCGA-D7-6519 
"DEL PEAK 41(20P12.1) WILD-TYPE"   "DEL PEAK 41(20P12.1) MUTATED" 
                    TCGA-D7-6520                     TCGA-D7-6521 
"DEL PEAK 41(20P12.1) WILD-TYPE" "DEL PEAK 41(20P12.1) WILD-TYPE" 
                    TCGA-D7-6522                     TCGA-D7-6524 
"DEL PEAK 41(20P12.1) WILD-TYPE" "DEL PEAK 41(20P12.1) WILD-TYPE" 
                    TCGA-D7-6525                     TCGA-D7-6526 
"DEL PEAK 41(20P12.1) WILD-TYPE"   "DEL PEAK 41(20P12.1) MUTATED" 
                    TCGA-D7-6527                     TCGA-D7-6528 
"DEL PEAK 41(20P12.1) WILD-TYPE" "DEL PEAK 41(20P12.1) WILD-TYPE" 
                    TCGA-D7-6815                     TCGA-D7-6817 
"DEL PEAK 41(20P12.1) WILD-TYPE" "DEL PEAK 41(20P12.1) WILD-TYPE" 
                    TCGA-D7-6818                     TCGA-D7-6820 
"DEL PEAK 41(20P12.1) WILD-TYPE" "DEL PEAK 41(20P12.1) WILD-TYPE" 
                    TCGA-D7-6822                     TCGA-EQ-5647 
  "DEL PEAK 41(20P12.1) MUTATED"   "DEL PEAK 41(20P12.1) MUTATED" 
                    TCGA-EQ-8122                     TCGA-F1-6177 
"DEL PEAK 41(20P12.1) WILD-TYPE" "DEL PEAK 41(20P12.1) WILD-TYPE" 
                    TCGA-F1-6874                     TCGA-F1-6875 
"DEL PEAK 41(20P12.1) WILD-TYPE" "DEL PEAK 41(20P12.1) WILD-TYPE" 
                    TCGA-FP-7735                     TCGA-FP-7829 
  "DEL PEAK 41(20P12.1) MUTATED" "DEL PEAK 41(20P12.1) WILD-TYPE" 
                    TCGA-FP-7916                     TCGA-FP-7998 
"DEL PEAK 41(20P12.1) WILD-TYPE" "DEL PEAK 41(20P12.1) WILD-TYPE" 
                    TCGA-HJ-7597                     TCGA-IN-7806 
"DEL PEAK 41(20P12.1) WILD-TYPE" "DEL PEAK 41(20P12.1) WILD-TYPE" 
                    TCGA-IN-7808                     TCGA-IP-7968 
"DEL PEAK 41(20P12.1) WILD-TYPE"   "DEL PEAK 41(20P12.1) MUTATED" 
                    TCGA-B7-5816                     TCGA-B7-5818 
  "DEL PEAK 41(20P12.1) MUTATED" "DEL PEAK 41(20P12.1) WILD-TYPE" 
                    TCGA-BR-6452                     TCGA-BR-6455 
"DEL PEAK 41(20P12.1) WILD-TYPE" "DEL PEAK 41(20P12.1) WILD-TYPE" 
                    TCGA-BR-6457                     TCGA-BR-6458 
"DEL PEAK 41(20P12.1) WILD-TYPE" "DEL PEAK 41(20P12.1) WILD-TYPE" 
                    TCGA-BR-6563                     TCGA-BR-6564 
"DEL PEAK 41(20P12.1) WILD-TYPE"   "DEL PEAK 41(20P12.1) MUTATED" 
                    TCGA-BR-6565                     TCGA-BR-6566 
  "DEL PEAK 41(20P12.1) MUTATED" "DEL PEAK 41(20P12.1) WILD-TYPE" 
                    TCGA-BR-6705                     TCGA-BR-6706 
"DEL PEAK 41(20P12.1) WILD-TYPE" "DEL PEAK 41(20P12.1) WILD-TYPE" 
                    TCGA-BR-6707                     TCGA-BR-6709 
"DEL PEAK 41(20P12.1) WILD-TYPE" "DEL PEAK 41(20P12.1) WILD-TYPE" 
                    TCGA-BR-6710                     TCGA-BR-6801 
"DEL PEAK 41(20P12.1) WILD-TYPE" "DEL PEAK 41(20P12.1) WILD-TYPE" 
                    TCGA-BR-6802                     TCGA-BR-6803 
"DEL PEAK 41(20P12.1) WILD-TYPE" "DEL PEAK 41(20P12.1) WILD-TYPE" 
                    TCGA-BR-6852                     TCGA-BR-7196 
"DEL PEAK 41(20P12.1) WILD-TYPE" "DEL PEAK 41(20P12.1) WILD-TYPE" 
                    TCGA-BR-7197                     TCGA-BR-7703 
"DEL PEAK 41(20P12.1) WILD-TYPE" "DEL PEAK 41(20P12.1) WILD-TYPE" 
                    TCGA-BR-7704                     TCGA-BR-7707 
"DEL PEAK 41(20P12.1) WILD-TYPE" "DEL PEAK 41(20P12.1) WILD-TYPE" 
                    TCGA-BR-7715                     TCGA-BR-7716 
"DEL PEAK 41(20P12.1) WILD-TYPE" "DEL PEAK 41(20P12.1) WILD-TYPE" 
                    TCGA-BR-7717                     TCGA-BR-7722 
"DEL PEAK 41(20P12.1) WILD-TYPE" "DEL PEAK 41(20P12.1) WILD-TYPE" 
                    TCGA-BR-7723                     TCGA-BR-7851 
  "DEL PEAK 41(20P12.1) MUTATED" "DEL PEAK 41(20P12.1) WILD-TYPE" 
                    TCGA-BR-7901                     TCGA-BR-7957 
"DEL PEAK 41(20P12.1) WILD-TYPE" "DEL PEAK 41(20P12.1) WILD-TYPE" 
                    TCGA-BR-7958                     TCGA-BR-7959 
"DEL PEAK 41(20P12.1) WILD-TYPE" "DEL PEAK 41(20P12.1) WILD-TYPE" 
                    TCGA-BR-8059                     TCGA-BR-8060 
"DEL PEAK 41(20P12.1) WILD-TYPE" "DEL PEAK 41(20P12.1) WILD-TYPE" 
                    TCGA-BR-8077                     TCGA-BR-8078 
"DEL PEAK 41(20P12.1) WILD-TYPE" "DEL PEAK 41(20P12.1) WILD-TYPE" 
                    TCGA-BR-8080                     TCGA-BR-8081 
"DEL PEAK 41(20P12.1) WILD-TYPE" "DEL PEAK 41(20P12.1) WILD-TYPE" 
                    TCGA-BR-8284                     TCGA-BR-8285 
"DEL PEAK 41(20P12.1) WILD-TYPE" "DEL PEAK 41(20P12.1) WILD-TYPE" 
                    TCGA-BR-8286                     TCGA-BR-8289 
"DEL PEAK 41(20P12.1) WILD-TYPE" "DEL PEAK 41(20P12.1) WILD-TYPE" 
                    TCGA-BR-8291                     TCGA-BR-8295 
"DEL PEAK 41(20P12.1) WILD-TYPE" "DEL PEAK 41(20P12.1) WILD-TYPE" 
                    TCGA-BR-8296                     TCGA-BR-8297 
"DEL PEAK 41(20P12.1) WILD-TYPE" "DEL PEAK 41(20P12.1) WILD-TYPE" 
                    TCGA-CD-5798                     TCGA-CD-5799 
"DEL PEAK 41(20P12.1) WILD-TYPE" "DEL PEAK 41(20P12.1) WILD-TYPE" 
                    TCGA-CD-5800                     TCGA-CD-5801 
  "DEL PEAK 41(20P12.1) MUTATED" "DEL PEAK 41(20P12.1) WILD-TYPE" 
                    TCGA-CD-5802                     TCGA-CD-5803 
"DEL PEAK 41(20P12.1) WILD-TYPE" "DEL PEAK 41(20P12.1) WILD-TYPE" 
                    TCGA-CG-4300                     TCGA-CG-4301 
"DEL PEAK 41(20P12.1) WILD-TYPE"   "DEL PEAK 41(20P12.1) MUTATED" 
                    TCGA-CG-4304                     TCGA-CG-4305 
"DEL PEAK 41(20P12.1) WILD-TYPE" "DEL PEAK 41(20P12.1) WILD-TYPE" 
                    TCGA-CG-4306                     TCGA-CG-4436 
"DEL PEAK 41(20P12.1) WILD-TYPE" "DEL PEAK 41(20P12.1) WILD-TYPE" 
                    TCGA-CG-4437                     TCGA-CG-4438 
  "DEL PEAK 41(20P12.1) MUTATED"   "DEL PEAK 41(20P12.1) MUTATED" 
                    TCGA-CG-4440                     TCGA-CG-4441 
"DEL PEAK 41(20P12.1) WILD-TYPE"   "DEL PEAK 41(20P12.1) MUTATED" 
                    TCGA-CG-4443                     TCGA-CG-4444 
"DEL PEAK 41(20P12.1) WILD-TYPE" "DEL PEAK 41(20P12.1) WILD-TYPE" 
                    TCGA-CG-4449                     TCGA-CG-4455 
"DEL PEAK 41(20P12.1) WILD-TYPE" "DEL PEAK 41(20P12.1) WILD-TYPE" 
                    TCGA-CG-4460                     TCGA-CG-4462 
"DEL PEAK 41(20P12.1) WILD-TYPE" "DEL PEAK 41(20P12.1) WILD-TYPE" 
                    TCGA-CG-4465                     TCGA-CG-4466 
"DEL PEAK 41(20P12.1) WILD-TYPE" "DEL PEAK 41(20P12.1) WILD-TYPE" 
                    TCGA-CG-4469                     TCGA-CG-4472 
"DEL PEAK 41(20P12.1) WILD-TYPE"   "DEL PEAK 41(20P12.1) MUTATED" 
                    TCGA-CG-4474                     TCGA-CG-4477 
"DEL PEAK 41(20P12.1) WILD-TYPE" "DEL PEAK 41(20P12.1) WILD-TYPE" 
                    TCGA-CG-5716                     TCGA-CG-5717 
"DEL PEAK 41(20P12.1) WILD-TYPE"   "DEL PEAK 41(20P12.1) MUTATED" 
                    TCGA-CG-5718                     TCGA-CG-5719 
"DEL PEAK 41(20P12.1) WILD-TYPE" "DEL PEAK 41(20P12.1) WILD-TYPE" 
                    TCGA-CG-5720                     TCGA-CG-5721 
"DEL PEAK 41(20P12.1) WILD-TYPE" "DEL PEAK 41(20P12.1) WILD-TYPE" 
                    TCGA-CG-5722                     TCGA-CG-5723 
"DEL PEAK 41(20P12.1) WILD-TYPE" "DEL PEAK 41(20P12.1) WILD-TYPE" 
                    TCGA-CG-5724                     TCGA-CG-5725 
"DEL PEAK 41(20P12.1) WILD-TYPE"   "DEL PEAK 41(20P12.1) MUTATED" 
                    TCGA-CG-5726                     TCGA-CG-5727 
"DEL PEAK 41(20P12.1) WILD-TYPE" "DEL PEAK 41(20P12.1) WILD-TYPE" 
                    TCGA-CG-5728                     TCGA-CG-5730 
"DEL PEAK 41(20P12.1) WILD-TYPE" "DEL PEAK 41(20P12.1) WILD-TYPE" 
                    TCGA-CG-5732                     TCGA-CG-5733 
"DEL PEAK 41(20P12.1) WILD-TYPE" "DEL PEAK 41(20P12.1) WILD-TYPE" 
                    TCGA-CG-5734                     TCGA-D7-5577 
"DEL PEAK 41(20P12.1) WILD-TYPE" "DEL PEAK 41(20P12.1) WILD-TYPE" 
                    TCGA-D7-5578                     TCGA-D7-5579 
"DEL PEAK 41(20P12.1) WILD-TYPE" "DEL PEAK 41(20P12.1) WILD-TYPE" 
                    TCGA-D7-6518                     TCGA-D7-6519 
"DEL PEAK 41(20P12.1) WILD-TYPE"   "DEL PEAK 41(20P12.1) MUTATED" 
                    TCGA-D7-6520                     TCGA-D7-6521 
"DEL PEAK 41(20P12.1) WILD-TYPE" "DEL PEAK 41(20P12.1) WILD-TYPE" 
                    TCGA-D7-6522                     TCGA-D7-6524 
"DEL PEAK 41(20P12.1) WILD-TYPE" "DEL PEAK 41(20P12.1) WILD-TYPE" 
                    TCGA-D7-6525                     TCGA-D7-6526 
"DEL PEAK 41(20P12.1) WILD-TYPE"   "DEL PEAK 41(20P12.1) MUTATED" 
                    TCGA-D7-6527                     TCGA-D7-6528 
"DEL PEAK 41(20P12.1) WILD-TYPE" "DEL PEAK 41(20P12.1) WILD-TYPE" 
                    TCGA-D7-6815                     TCGA-D7-6817 
"DEL PEAK 41(20P12.1) WILD-TYPE" "DEL PEAK 41(20P12.1) WILD-TYPE" 
                    TCGA-D7-6818                     TCGA-D7-6820 
"DEL PEAK 41(20P12.1) WILD-TYPE" "DEL PEAK 41(20P12.1) WILD-TYPE" 
                    TCGA-D7-6822                     TCGA-EQ-5647 
  "DEL PEAK 41(20P12.1) MUTATED"   "DEL PEAK 41(20P12.1) MUTATED" 
                    TCGA-EQ-8122                     TCGA-F1-6177 
"DEL PEAK 41(20P12.1) WILD-TYPE" "DEL PEAK 41(20P12.1) WILD-TYPE" 
                    TCGA-F1-6874                     TCGA-F1-6875 
"DEL PEAK 41(20P12.1) WILD-TYPE" "DEL PEAK 41(20P12.1) WILD-TYPE" 
                    TCGA-FP-7735                     TCGA-FP-7829 
  "DEL PEAK 41(20P12.1) MUTATED" "DEL PEAK 41(20P12.1) WILD-TYPE" 
                    TCGA-FP-7916                     TCGA-FP-7998 
"DEL PEAK 41(20P12.1) WILD-TYPE" "DEL PEAK 41(20P12.1) WILD-TYPE" 
                    TCGA-HJ-7597                     TCGA-IN-7806 
"DEL PEAK 41(20P12.1) WILD-TYPE" "DEL PEAK 41(20P12.1) WILD-TYPE" 
                    TCGA-IN-7808                     TCGA-IP-7968 
"DEL PEAK 41(20P12.1) WILD-TYPE"   "DEL PEAK 41(20P12.1) MUTATED" 
                    TCGA-B7-5816                     TCGA-B7-5818 
  "DEL PEAK 41(20P12.1) MUTATED" "DEL PEAK 41(20P12.1) WILD-TYPE" 
                    TCGA-BR-6452                     TCGA-BR-6455 
"DEL PEAK 41(20P12.1) WILD-TYPE" "DEL PEAK 41(20P12.1) WILD-TYPE" 
                    TCGA-BR-6457                     TCGA-BR-6458 
"DEL PEAK 41(20P12.1) WILD-TYPE" "DEL PEAK 41(20P12.1) WILD-TYPE" 
                    TCGA-BR-6563                     TCGA-BR-6564 
"DEL PEAK 41(20P12.1) WILD-TYPE"   "DEL PEAK 41(20P12.1) MUTATED" 
                    TCGA-BR-6565                     TCGA-BR-6566 
  "DEL PEAK 41(20P12.1) MUTATED" "DEL PEAK 41(20P12.1) WILD-TYPE" 
                    TCGA-BR-6705                     TCGA-BR-6706 
"DEL PEAK 41(20P12.1) WILD-TYPE" "DEL PEAK 41(20P12.1) WILD-TYPE" 
                    TCGA-BR-6707                     TCGA-BR-6709 
"DEL PEAK 41(20P12.1) WILD-TYPE" "DEL PEAK 41(20P12.1) WILD-TYPE" 
                    TCGA-BR-6710                     TCGA-BR-6801 
"DEL PEAK 41(20P12.1) WILD-TYPE" "DEL PEAK 41(20P12.1) WILD-TYPE" 
                    TCGA-BR-6802                     TCGA-BR-6803 
"DEL PEAK 41(20P12.1) WILD-TYPE" "DEL PEAK 41(20P12.1) WILD-TYPE" 
                    TCGA-BR-6852                     TCGA-BR-7196 
"DEL PEAK 41(20P12.1) WILD-TYPE" "DEL PEAK 41(20P12.1) WILD-TYPE" 
                    TCGA-BR-7197                     TCGA-BR-7703 
"DEL PEAK 41(20P12.1) WILD-TYPE" "DEL PEAK 41(20P12.1) WILD-TYPE" 
                    TCGA-BR-7704                     TCGA-BR-7707 
"DEL PEAK 41(20P12.1) WILD-TYPE" "DEL PEAK 41(20P12.1) WILD-TYPE" 
                    TCGA-BR-7715                     TCGA-BR-7716 
"DEL PEAK 41(20P12.1) WILD-TYPE" "DEL PEAK 41(20P12.1) WILD-TYPE" 
                    TCGA-BR-7717                     TCGA-BR-7722 
"DEL PEAK 41(20P12.1) WILD-TYPE" "DEL PEAK 41(20P12.1) WILD-TYPE" 
                    TCGA-BR-7723                     TCGA-BR-7851 
  "DEL PEAK 41(20P12.1) MUTATED" "DEL PEAK 41(20P12.1) WILD-TYPE" 
                    TCGA-BR-7901                     TCGA-BR-7957 
"DEL PEAK 41(20P12.1) WILD-TYPE" "DEL PEAK 41(20P12.1) WILD-TYPE" 
                    TCGA-BR-7958                     TCGA-BR-7959 
"DEL PEAK 41(20P12.1) WILD-TYPE" "DEL PEAK 41(20P12.1) WILD-TYPE" 
                    TCGA-BR-8059                     TCGA-BR-8060 
"DEL PEAK 41(20P12.1) WILD-TYPE" "DEL PEAK 41(20P12.1) WILD-TYPE" 
                    TCGA-BR-8077                     TCGA-BR-8078 
"DEL PEAK 41(20P12.1) WILD-TYPE" "DEL PEAK 41(20P12.1) WILD-TYPE" 
                    TCGA-BR-8080                     TCGA-BR-8081 
"DEL PEAK 41(20P12.1) WILD-TYPE" "DEL PEAK 41(20P12.1) WILD-TYPE" 
                    TCGA-BR-8284                     TCGA-BR-8285 
"DEL PEAK 41(20P12.1) WILD-TYPE" "DEL PEAK 41(20P12.1) WILD-TYPE" 
                    TCGA-BR-8286                     TCGA-BR-8289 
"DEL PEAK 41(20P12.1) WILD-TYPE" "DEL PEAK 41(20P12.1) WILD-TYPE" 
                    TCGA-BR-8291                     TCGA-BR-8295 
"DEL PEAK 41(20P12.1) WILD-TYPE" "DEL PEAK 41(20P12.1) WILD-TYPE" 
                    TCGA-BR-8296                     TCGA-BR-8297 
"DEL PEAK 41(20P12.1) WILD-TYPE" "DEL PEAK 41(20P12.1) WILD-TYPE" 
                    TCGA-CD-5798                     TCGA-CD-5799 
"DEL PEAK 41(20P12.1) WILD-TYPE" "DEL PEAK 41(20P12.1) WILD-TYPE" 
                    TCGA-CD-5800                     TCGA-CD-5801 
  "DEL PEAK 41(20P12.1) MUTATED" "DEL PEAK 41(20P12.1) WILD-TYPE" 
                    TCGA-CD-5802                     TCGA-CD-5803 
"DEL PEAK 41(20P12.1) WILD-TYPE" "DEL PEAK 41(20P12.1) WILD-TYPE" 
                    TCGA-CG-4300                     TCGA-CG-4301 
"DEL PEAK 41(20P12.1) WILD-TYPE"   "DEL PEAK 41(20P12.1) MUTATED" 
                    TCGA-CG-4304                     TCGA-CG-4305 
"DEL PEAK 41(20P12.1) WILD-TYPE" "DEL PEAK 41(20P12.1) WILD-TYPE" 
                    TCGA-CG-4306                     TCGA-CG-4436 
"DEL PEAK 41(20P12.1) WILD-TYPE" "DEL PEAK 41(20P12.1) WILD-TYPE" 
                    TCGA-CG-4437                     TCGA-CG-4438 
  "DEL PEAK 41(20P12.1) MUTATED"   "DEL PEAK 41(20P12.1) MUTATED" 
                    TCGA-CG-4440                     TCGA-CG-4441 
"DEL PEAK 41(20P12.1) WILD-TYPE"   "DEL PEAK 41(20P12.1) MUTATED" 
                    TCGA-CG-4443                     TCGA-CG-4444 
"DEL PEAK 41(20P12.1) WILD-TYPE" "DEL PEAK 41(20P12.1) WILD-TYPE" 
                    TCGA-CG-4449                     TCGA-CG-4455 
"DEL PEAK 41(20P12.1) WILD-TYPE" "DEL PEAK 41(20P12.1) WILD-TYPE" 
                    TCGA-CG-4460                     TCGA-CG-4462 
"DEL PEAK 41(20P12.1) WILD-TYPE" "DEL PEAK 41(20P12.1) WILD-TYPE" 
                    TCGA-CG-4465                     TCGA-CG-4466 
"DEL PEAK 41(20P12.1) WILD-TYPE" "DEL PEAK 41(20P12.1) WILD-TYPE" 
                    TCGA-CG-4469                     TCGA-CG-4472 
"DEL PEAK 41(20P12.1) WILD-TYPE"   "DEL PEAK 41(20P12.1) MUTATED" 
                    TCGA-CG-4474                     TCGA-CG-4477 
"DEL PEAK 41(20P12.1) WILD-TYPE" "DEL PEAK 41(20P12.1) WILD-TYPE" 
                    TCGA-CG-5716                     TCGA-CG-5717 
"DEL PEAK 41(20P12.1) WILD-TYPE"   "DEL PEAK 41(20P12.1) MUTATED" 
                    TCGA-CG-5718                     TCGA-CG-5719 
"DEL PEAK 41(20P12.1) WILD-TYPE" "DEL PEAK 41(20P12.1) WILD-TYPE" 
                    TCGA-CG-5720                     TCGA-CG-5721 
"DEL PEAK 41(20P12.1) WILD-TYPE" "DEL PEAK 41(20P12.1) WILD-TYPE" 
                    TCGA-CG-5722                     TCGA-CG-5723 
"DEL PEAK 41(20P12.1) WILD-TYPE" "DEL PEAK 41(20P12.1) WILD-TYPE" 
                    TCGA-CG-5724                     TCGA-CG-5725 
"DEL PEAK 41(20P12.1) WILD-TYPE"   "DEL PEAK 41(20P12.1) MUTATED" 
                    TCGA-CG-5726                     TCGA-CG-5727 
"DEL PEAK 41(20P12.1) WILD-TYPE" "DEL PEAK 41(20P12.1) WILD-TYPE" 
                    TCGA-CG-5728                     TCGA-CG-5730 
"DEL PEAK 41(20P12.1) WILD-TYPE" "DEL PEAK 41(20P12.1) WILD-TYPE" 
                    TCGA-CG-5732                     TCGA-CG-5733 
"DEL PEAK 41(20P12.1) WILD-TYPE" "DEL PEAK 41(20P12.1) WILD-TYPE" 
                    TCGA-CG-5734                     TCGA-D7-5577 
"DEL PEAK 41(20P12.1) WILD-TYPE" "DEL PEAK 41(20P12.1) WILD-TYPE" 
                    TCGA-D7-5578                     TCGA-D7-5579 
"DEL PEAK 41(20P12.1) WILD-TYPE" "DEL PEAK 41(20P12.1) WILD-TYPE" 
                    TCGA-D7-6518                     TCGA-D7-6519 
"DEL PEAK 41(20P12.1) WILD-TYPE"   "DEL PEAK 41(20P12.1) MUTATED" 
                    TCGA-D7-6520                     TCGA-D7-6521 
"DEL PEAK 41(20P12.1) WILD-TYPE" "DEL PEAK 41(20P12.1) WILD-TYPE" 
                    TCGA-D7-6522                     TCGA-D7-6524 
"DEL PEAK 41(20P12.1) WILD-TYPE" "DEL PEAK 41(20P12.1) WILD-TYPE" 
                    TCGA-D7-6525                     TCGA-D7-6526 
"DEL PEAK 41(20P12.1) WILD-TYPE"   "DEL PEAK 41(20P12.1) MUTATED" 
                    TCGA-D7-6527                     TCGA-D7-6528 
"DEL PEAK 41(20P12.1) WILD-TYPE" "DEL PEAK 41(20P12.1) WILD-TYPE" 
                    TCGA-D7-6815                     TCGA-D7-6817 
"DEL PEAK 41(20P12.1) WILD-TYPE" "DEL PEAK 41(20P12.1) WILD-TYPE" 
                    TCGA-D7-6818                     TCGA-D7-6820 
"DEL PEAK 41(20P12.1) WILD-TYPE" "DEL PEAK 41(20P12.1) WILD-TYPE" 
                    TCGA-D7-6822                     TCGA-EQ-5647 
  "DEL PEAK 41(20P12.1) MUTATED"   "DEL PEAK 41(20P12.1) MUTATED" 
                    TCGA-EQ-8122                     TCGA-F1-6177 
"DEL PEAK 41(20P12.1) WILD-TYPE" "DEL PEAK 41(20P12.1) WILD-TYPE" 
                    TCGA-F1-6874                     TCGA-F1-6875 
"DEL PEAK 41(20P12.1) WILD-TYPE" "DEL PEAK 41(20P12.1) WILD-TYPE" 
                    TCGA-FP-7735                     TCGA-FP-7829 
  "DEL PEAK 41(20P12.1) MUTATED" "DEL PEAK 41(20P12.1) WILD-TYPE" 
                    TCGA-FP-7916                     TCGA-FP-7998 
"DEL PEAK 41(20P12.1) WILD-TYPE" "DEL PEAK 41(20P12.1) WILD-TYPE" 
                    TCGA-HJ-7597                     TCGA-IN-7806 
"DEL PEAK 41(20P12.1) WILD-TYPE" "DEL PEAK 41(20P12.1) WILD-TYPE" 
                    TCGA-IN-7808                     TCGA-IP-7968 
"DEL PEAK 41(20P12.1) WILD-TYPE"   "DEL PEAK 41(20P12.1) MUTATED" 
[1] "hr=" "2"  
D67V2, continuous
D67V3, binary
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  DEL PEAK 41(20P12.1) MUTATED     10   14
  DEL PEAK 41(20P12.1) WILD-TYPE   55   82
        clus
vv       DEL PEAK 41(20P12.1) MUTATED DEL PEAK 41(20P12.1) WILD-TYPE
  FEMALE                           10                             55
  MALE                             14                             82
D67V4, multiclass
D67V5, multiclass
    clus
vv   DEL PEAK 41(20P12.1) MUTATED DEL PEAK 41(20P12.1) WILD-TYPE
  T1                            0                              6
  T2                           10                             43
  T3                            7                             52
  T4                            5                             28
D67V6, multiclass
    clus
vv   DEL PEAK 41(20P12.1) MUTATED DEL PEAK 41(20P12.1) WILD-TYPE
  N0                            8                             42
  N1                            7                             50
  N2                            5                             19
  N3                            2                             17
D67V7, multiclass
    clus
vv   DEL PEAK 41(20P12.1) MUTATED DEL PEAK 41(20P12.1) WILD-TYPE
  M0                           19                            113
  M1                            2                             16
  MX                            3                              8
D67V8, multiclass
     clus
vv    DEL PEAK 41(20P12.1) MUTATED DEL PEAK 41(20P12.1) WILD-TYPE
  I                              5                             20
  II                             6                             37
  III                            6                             42
  IV                             5                             24
D67V9, binary
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  DEL PEAK 41(20P12.1) MUTATED     22    2
  DEL PEAK 41(20P12.1) WILD-TYPE  134    3
     clus
vv    DEL PEAK 41(20P12.1) MUTATED DEL PEAK 41(20P12.1) WILD-TYPE
  NO                             2                              3
  YES                           22                            134

Clustering(68) Variable = Del Peak 42(21q11.2) mutation analysis
D68V1, survival
                    TCGA-B7-5816                     TCGA-B7-5818 
"DEL PEAK 42(21Q11.2) WILD-TYPE"   "DEL PEAK 42(21Q11.2) MUTATED" 
                    TCGA-BR-6452                     TCGA-BR-6455 
"DEL PEAK 42(21Q11.2) WILD-TYPE" "DEL PEAK 42(21Q11.2) WILD-TYPE" 
                    TCGA-BR-6457                     TCGA-BR-6458 
  "DEL PEAK 42(21Q11.2) MUTATED"   "DEL PEAK 42(21Q11.2) MUTATED" 
                    TCGA-BR-6563                     TCGA-BR-6564 
"DEL PEAK 42(21Q11.2) WILD-TYPE"   "DEL PEAK 42(21Q11.2) MUTATED" 
                    TCGA-BR-6565                     TCGA-BR-6566 
  "DEL PEAK 42(21Q11.2) MUTATED" "DEL PEAK 42(21Q11.2) WILD-TYPE" 
                    TCGA-BR-6705                     TCGA-BR-6706 
"DEL PEAK 42(21Q11.2) WILD-TYPE" "DEL PEAK 42(21Q11.2) WILD-TYPE" 
                    TCGA-BR-6707                     TCGA-BR-6709 
"DEL PEAK 42(21Q11.2) WILD-TYPE" "DEL PEAK 42(21Q11.2) WILD-TYPE" 
                    TCGA-BR-6710                     TCGA-BR-6801 
"DEL PEAK 42(21Q11.2) WILD-TYPE" "DEL PEAK 42(21Q11.2) WILD-TYPE" 
                    TCGA-BR-6802                     TCGA-BR-6803 
"DEL PEAK 42(21Q11.2) WILD-TYPE"   "DEL PEAK 42(21Q11.2) MUTATED" 
                    TCGA-BR-6852                     TCGA-BR-7196 
"DEL PEAK 42(21Q11.2) WILD-TYPE" "DEL PEAK 42(21Q11.2) WILD-TYPE" 
                    TCGA-BR-7197                     TCGA-BR-7703 
"DEL PEAK 42(21Q11.2) WILD-TYPE" "DEL PEAK 42(21Q11.2) WILD-TYPE" 
                    TCGA-BR-7704                     TCGA-BR-7707 
  "DEL PEAK 42(21Q11.2) MUTATED" "DEL PEAK 42(21Q11.2) WILD-TYPE" 
                    TCGA-BR-7715                     TCGA-BR-7716 
  "DEL PEAK 42(21Q11.2) MUTATED"   "DEL PEAK 42(21Q11.2) MUTATED" 
                    TCGA-BR-7717                     TCGA-BR-7722 
"DEL PEAK 42(21Q11.2) WILD-TYPE" "DEL PEAK 42(21Q11.2) WILD-TYPE" 
                    TCGA-BR-7723                     TCGA-BR-7851 
  "DEL PEAK 42(21Q11.2) MUTATED" "DEL PEAK 42(21Q11.2) WILD-TYPE" 
                    TCGA-BR-7901                     TCGA-BR-7957 
"DEL PEAK 42(21Q11.2) WILD-TYPE" "DEL PEAK 42(21Q11.2) WILD-TYPE" 
                    TCGA-BR-7958                     TCGA-BR-7959 
"DEL PEAK 42(21Q11.2) WILD-TYPE" "DEL PEAK 42(21Q11.2) WILD-TYPE" 
                    TCGA-BR-8059                     TCGA-BR-8060 
"DEL PEAK 42(21Q11.2) WILD-TYPE" "DEL PEAK 42(21Q11.2) WILD-TYPE" 
                    TCGA-BR-8077                     TCGA-BR-8078 
"DEL PEAK 42(21Q11.2) WILD-TYPE" "DEL PEAK 42(21Q11.2) WILD-TYPE" 
                    TCGA-BR-8080                     TCGA-BR-8081 
"DEL PEAK 42(21Q11.2) WILD-TYPE" "DEL PEAK 42(21Q11.2) WILD-TYPE" 
                    TCGA-BR-8284                     TCGA-BR-8285 
"DEL PEAK 42(21Q11.2) WILD-TYPE" "DEL PEAK 42(21Q11.2) WILD-TYPE" 
                    TCGA-BR-8286                     TCGA-BR-8289 
"DEL PEAK 42(21Q11.2) WILD-TYPE" "DEL PEAK 42(21Q11.2) WILD-TYPE" 
                    TCGA-BR-8291                     TCGA-BR-8295 
"DEL PEAK 42(21Q11.2) WILD-TYPE" "DEL PEAK 42(21Q11.2) WILD-TYPE" 
                    TCGA-BR-8296                     TCGA-BR-8297 
"DEL PEAK 42(21Q11.2) WILD-TYPE" "DEL PEAK 42(21Q11.2) WILD-TYPE" 
                    TCGA-CD-5798                     TCGA-CD-5799 
"DEL PEAK 42(21Q11.2) WILD-TYPE" "DEL PEAK 42(21Q11.2) WILD-TYPE" 
                    TCGA-CD-5800                     TCGA-CD-5801 
"DEL PEAK 42(21Q11.2) WILD-TYPE" "DEL PEAK 42(21Q11.2) WILD-TYPE" 
                    TCGA-CD-5802                     TCGA-CD-5803 
"DEL PEAK 42(21Q11.2) WILD-TYPE" "DEL PEAK 42(21Q11.2) WILD-TYPE" 
                    TCGA-CG-4300                     TCGA-CG-4301 
  "DEL PEAK 42(21Q11.2) MUTATED" "DEL PEAK 42(21Q11.2) WILD-TYPE" 
                    TCGA-CG-4304                     TCGA-CG-4305 
"DEL PEAK 42(21Q11.2) WILD-TYPE" "DEL PEAK 42(21Q11.2) WILD-TYPE" 
                    TCGA-CG-4306                     TCGA-CG-4436 
"DEL PEAK 42(21Q11.2) WILD-TYPE" "DEL PEAK 42(21Q11.2) WILD-TYPE" 
                    TCGA-CG-4437                     TCGA-CG-4438 
"DEL PEAK 42(21Q11.2) WILD-TYPE"   "DEL PEAK 42(21Q11.2) MUTATED" 
                    TCGA-CG-4440                     TCGA-CG-4441 
  "DEL PEAK 42(21Q11.2) MUTATED" "DEL PEAK 42(21Q11.2) WILD-TYPE" 
                    TCGA-CG-4443                     TCGA-CG-4444 
"DEL PEAK 42(21Q11.2) WILD-TYPE"   "DEL PEAK 42(21Q11.2) MUTATED" 
                    TCGA-CG-4449                     TCGA-CG-4455 
"DEL PEAK 42(21Q11.2) WILD-TYPE"   "DEL PEAK 42(21Q11.2) MUTATED" 
                    TCGA-CG-4460                     TCGA-CG-4462 
"DEL PEAK 42(21Q11.2) WILD-TYPE" "DEL PEAK 42(21Q11.2) WILD-TYPE" 
                    TCGA-CG-4465                     TCGA-CG-4466 
"DEL PEAK 42(21Q11.2) WILD-TYPE"   "DEL PEAK 42(21Q11.2) MUTATED" 
                    TCGA-CG-4469                     TCGA-CG-4472 
  "DEL PEAK 42(21Q11.2) MUTATED" "DEL PEAK 42(21Q11.2) WILD-TYPE" 
                    TCGA-CG-4474                     TCGA-CG-4477 
"DEL PEAK 42(21Q11.2) WILD-TYPE"   "DEL PEAK 42(21Q11.2) MUTATED" 
                    TCGA-CG-5716                     TCGA-CG-5717 
"DEL PEAK 42(21Q11.2) WILD-TYPE"   "DEL PEAK 42(21Q11.2) MUTATED" 
                    TCGA-CG-5718                     TCGA-CG-5719 
  "DEL PEAK 42(21Q11.2) MUTATED"   "DEL PEAK 42(21Q11.2) MUTATED" 
                    TCGA-CG-5720                     TCGA-CG-5721 
"DEL PEAK 42(21Q11.2) WILD-TYPE" "DEL PEAK 42(21Q11.2) WILD-TYPE" 
                    TCGA-CG-5722                     TCGA-CG-5723 
"DEL PEAK 42(21Q11.2) WILD-TYPE" "DEL PEAK 42(21Q11.2) WILD-TYPE" 
                    TCGA-CG-5724                     TCGA-CG-5725 
  "DEL PEAK 42(21Q11.2) MUTATED" "DEL PEAK 42(21Q11.2) WILD-TYPE" 
                    TCGA-CG-5726                     TCGA-CG-5727 
"DEL PEAK 42(21Q11.2) WILD-TYPE" "DEL PEAK 42(21Q11.2) WILD-TYPE" 
                    TCGA-CG-5728                     TCGA-CG-5730 
  "DEL PEAK 42(21Q11.2) MUTATED"   "DEL PEAK 42(21Q11.2) MUTATED" 
                    TCGA-CG-5732                     TCGA-CG-5733 
"DEL PEAK 42(21Q11.2) WILD-TYPE" "DEL PEAK 42(21Q11.2) WILD-TYPE" 
                    TCGA-CG-5734                     TCGA-D7-5577 
"DEL PEAK 42(21Q11.2) WILD-TYPE" "DEL PEAK 42(21Q11.2) WILD-TYPE" 
                    TCGA-D7-5578                     TCGA-D7-5579 
"DEL PEAK 42(21Q11.2) WILD-TYPE"   "DEL PEAK 42(21Q11.2) MUTATED" 
                    TCGA-D7-6518                     TCGA-D7-6519 
  "DEL PEAK 42(21Q11.2) MUTATED"   "DEL PEAK 42(21Q11.2) MUTATED" 
                    TCGA-D7-6520                     TCGA-D7-6521 
"DEL PEAK 42(21Q11.2) WILD-TYPE" "DEL PEAK 42(21Q11.2) WILD-TYPE" 
                    TCGA-D7-6522                     TCGA-D7-6524 
"DEL PEAK 42(21Q11.2) WILD-TYPE" "DEL PEAK 42(21Q11.2) WILD-TYPE" 
                    TCGA-D7-6525                     TCGA-D7-6526 
"DEL PEAK 42(21Q11.2) WILD-TYPE"   "DEL PEAK 42(21Q11.2) MUTATED" 
                    TCGA-D7-6527                     TCGA-D7-6528 
"DEL PEAK 42(21Q11.2) WILD-TYPE" "DEL PEAK 42(21Q11.2) WILD-TYPE" 
                    TCGA-D7-6815                     TCGA-D7-6817 
  "DEL PEAK 42(21Q11.2) MUTATED"   "DEL PEAK 42(21Q11.2) MUTATED" 
                    TCGA-D7-6818                     TCGA-D7-6820 
"DEL PEAK 42(21Q11.2) WILD-TYPE"   "DEL PEAK 42(21Q11.2) MUTATED" 
                    TCGA-D7-6822                     TCGA-EQ-5647 
  "DEL PEAK 42(21Q11.2) MUTATED"   "DEL PEAK 42(21Q11.2) MUTATED" 
                    TCGA-EQ-8122                     TCGA-F1-6177 
"DEL PEAK 42(21Q11.2) WILD-TYPE" "DEL PEAK 42(21Q11.2) WILD-TYPE" 
                    TCGA-F1-6874                     TCGA-F1-6875 
"DEL PEAK 42(21Q11.2) WILD-TYPE"   "DEL PEAK 42(21Q11.2) MUTATED" 
                    TCGA-FP-7735                     TCGA-FP-7829 
"DEL PEAK 42(21Q11.2) WILD-TYPE"   "DEL PEAK 42(21Q11.2) MUTATED" 
                    TCGA-FP-7916                     TCGA-FP-7998 
"DEL PEAK 42(21Q11.2) WILD-TYPE" "DEL PEAK 42(21Q11.2) WILD-TYPE" 
                    TCGA-HJ-7597                     TCGA-IN-7806 
  "DEL PEAK 42(21Q11.2) MUTATED"   "DEL PEAK 42(21Q11.2) MUTATED" 
                    TCGA-IN-7808                     TCGA-IP-7968 
"DEL PEAK 42(21Q11.2) WILD-TYPE"   "DEL PEAK 42(21Q11.2) MUTATED" 
                    TCGA-B7-5816                     TCGA-B7-5818 
"DEL PEAK 42(21Q11.2) WILD-TYPE"   "DEL PEAK 42(21Q11.2) MUTATED" 
                    TCGA-BR-6452                     TCGA-BR-6455 
"DEL PEAK 42(21Q11.2) WILD-TYPE" "DEL PEAK 42(21Q11.2) WILD-TYPE" 
                    TCGA-BR-6457                     TCGA-BR-6458 
  "DEL PEAK 42(21Q11.2) MUTATED"   "DEL PEAK 42(21Q11.2) MUTATED" 
                    TCGA-BR-6563                     TCGA-BR-6564 
"DEL PEAK 42(21Q11.2) WILD-TYPE"   "DEL PEAK 42(21Q11.2) MUTATED" 
                    TCGA-BR-6565                     TCGA-BR-6566 
  "DEL PEAK 42(21Q11.2) MUTATED" "DEL PEAK 42(21Q11.2) WILD-TYPE" 
                    TCGA-BR-6705                     TCGA-BR-6706 
"DEL PEAK 42(21Q11.2) WILD-TYPE" "DEL PEAK 42(21Q11.2) WILD-TYPE" 
                    TCGA-BR-6707                     TCGA-BR-6709 
"DEL PEAK 42(21Q11.2) WILD-TYPE" "DEL PEAK 42(21Q11.2) WILD-TYPE" 
                    TCGA-BR-6710                     TCGA-BR-6801 
"DEL PEAK 42(21Q11.2) WILD-TYPE" "DEL PEAK 42(21Q11.2) WILD-TYPE" 
                    TCGA-BR-6802                     TCGA-BR-6803 
"DEL PEAK 42(21Q11.2) WILD-TYPE"   "DEL PEAK 42(21Q11.2) MUTATED" 
                    TCGA-BR-6852                     TCGA-BR-7196 
"DEL PEAK 42(21Q11.2) WILD-TYPE" "DEL PEAK 42(21Q11.2) WILD-TYPE" 
                    TCGA-BR-7197                     TCGA-BR-7703 
"DEL PEAK 42(21Q11.2) WILD-TYPE" "DEL PEAK 42(21Q11.2) WILD-TYPE" 
                    TCGA-BR-7704                     TCGA-BR-7707 
  "DEL PEAK 42(21Q11.2) MUTATED" "DEL PEAK 42(21Q11.2) WILD-TYPE" 
                    TCGA-BR-7715                     TCGA-BR-7716 
  "DEL PEAK 42(21Q11.2) MUTATED"   "DEL PEAK 42(21Q11.2) MUTATED" 
                    TCGA-BR-7717                     TCGA-BR-7722 
"DEL PEAK 42(21Q11.2) WILD-TYPE" "DEL PEAK 42(21Q11.2) WILD-TYPE" 
                    TCGA-BR-7723                     TCGA-BR-7851 
  "DEL PEAK 42(21Q11.2) MUTATED" "DEL PEAK 42(21Q11.2) WILD-TYPE" 
                    TCGA-BR-7901                     TCGA-BR-7957 
"DEL PEAK 42(21Q11.2) WILD-TYPE" "DEL PEAK 42(21Q11.2) WILD-TYPE" 
                    TCGA-BR-7958                     TCGA-BR-7959 
"DEL PEAK 42(21Q11.2) WILD-TYPE" "DEL PEAK 42(21Q11.2) WILD-TYPE" 
                    TCGA-BR-8059                     TCGA-BR-8060 
"DEL PEAK 42(21Q11.2) WILD-TYPE" "DEL PEAK 42(21Q11.2) WILD-TYPE" 
                    TCGA-BR-8077                     TCGA-BR-8078 
"DEL PEAK 42(21Q11.2) WILD-TYPE" "DEL PEAK 42(21Q11.2) WILD-TYPE" 
                    TCGA-BR-8080                     TCGA-BR-8081 
"DEL PEAK 42(21Q11.2) WILD-TYPE" "DEL PEAK 42(21Q11.2) WILD-TYPE" 
                    TCGA-BR-8284                     TCGA-BR-8285 
"DEL PEAK 42(21Q11.2) WILD-TYPE" "DEL PEAK 42(21Q11.2) WILD-TYPE" 
                    TCGA-BR-8286                     TCGA-BR-8289 
"DEL PEAK 42(21Q11.2) WILD-TYPE" "DEL PEAK 42(21Q11.2) WILD-TYPE" 
                    TCGA-BR-8291                     TCGA-BR-8295 
"DEL PEAK 42(21Q11.2) WILD-TYPE" "DEL PEAK 42(21Q11.2) WILD-TYPE" 
                    TCGA-BR-8296                     TCGA-BR-8297 
"DEL PEAK 42(21Q11.2) WILD-TYPE" "DEL PEAK 42(21Q11.2) WILD-TYPE" 
                    TCGA-CD-5798                     TCGA-CD-5799 
"DEL PEAK 42(21Q11.2) WILD-TYPE" "DEL PEAK 42(21Q11.2) WILD-TYPE" 
                    TCGA-CD-5800                     TCGA-CD-5801 
"DEL PEAK 42(21Q11.2) WILD-TYPE" "DEL PEAK 42(21Q11.2) WILD-TYPE" 
                    TCGA-CD-5802                     TCGA-CD-5803 
"DEL PEAK 42(21Q11.2) WILD-TYPE" "DEL PEAK 42(21Q11.2) WILD-TYPE" 
                    TCGA-CG-4300                     TCGA-CG-4301 
  "DEL PEAK 42(21Q11.2) MUTATED" "DEL PEAK 42(21Q11.2) WILD-TYPE" 
                    TCGA-CG-4304                     TCGA-CG-4305 
"DEL PEAK 42(21Q11.2) WILD-TYPE" "DEL PEAK 42(21Q11.2) WILD-TYPE" 
                    TCGA-CG-4306                     TCGA-CG-4436 
"DEL PEAK 42(21Q11.2) WILD-TYPE" "DEL PEAK 42(21Q11.2) WILD-TYPE" 
                    TCGA-CG-4437                     TCGA-CG-4438 
"DEL PEAK 42(21Q11.2) WILD-TYPE"   "DEL PEAK 42(21Q11.2) MUTATED" 
                    TCGA-CG-4440                     TCGA-CG-4441 
  "DEL PEAK 42(21Q11.2) MUTATED" "DEL PEAK 42(21Q11.2) WILD-TYPE" 
                    TCGA-CG-4443                     TCGA-CG-4444 
"DEL PEAK 42(21Q11.2) WILD-TYPE"   "DEL PEAK 42(21Q11.2) MUTATED" 
                    TCGA-CG-4449                     TCGA-CG-4455 
"DEL PEAK 42(21Q11.2) WILD-TYPE"   "DEL PEAK 42(21Q11.2) MUTATED" 
                    TCGA-CG-4460                     TCGA-CG-4462 
"DEL PEAK 42(21Q11.2) WILD-TYPE" "DEL PEAK 42(21Q11.2) WILD-TYPE" 
                    TCGA-CG-4465                     TCGA-CG-4466 
"DEL PEAK 42(21Q11.2) WILD-TYPE"   "DEL PEAK 42(21Q11.2) MUTATED" 
                    TCGA-CG-4469                     TCGA-CG-4472 
  "DEL PEAK 42(21Q11.2) MUTATED" "DEL PEAK 42(21Q11.2) WILD-TYPE" 
                    TCGA-CG-4474                     TCGA-CG-4477 
"DEL PEAK 42(21Q11.2) WILD-TYPE"   "DEL PEAK 42(21Q11.2) MUTATED" 
                    TCGA-CG-5716                     TCGA-CG-5717 
"DEL PEAK 42(21Q11.2) WILD-TYPE"   "DEL PEAK 42(21Q11.2) MUTATED" 
                    TCGA-CG-5718                     TCGA-CG-5719 
  "DEL PEAK 42(21Q11.2) MUTATED"   "DEL PEAK 42(21Q11.2) MUTATED" 
                    TCGA-CG-5720                     TCGA-CG-5721 
"DEL PEAK 42(21Q11.2) WILD-TYPE" "DEL PEAK 42(21Q11.2) WILD-TYPE" 
                    TCGA-CG-5722                     TCGA-CG-5723 
"DEL PEAK 42(21Q11.2) WILD-TYPE" "DEL PEAK 42(21Q11.2) WILD-TYPE" 
                    TCGA-CG-5724                     TCGA-CG-5725 
  "DEL PEAK 42(21Q11.2) MUTATED" "DEL PEAK 42(21Q11.2) WILD-TYPE" 
                    TCGA-CG-5726                     TCGA-CG-5727 
"DEL PEAK 42(21Q11.2) WILD-TYPE" "DEL PEAK 42(21Q11.2) WILD-TYPE" 
                    TCGA-CG-5728                     TCGA-CG-5730 
  "DEL PEAK 42(21Q11.2) MUTATED"   "DEL PEAK 42(21Q11.2) MUTATED" 
                    TCGA-CG-5732                     TCGA-CG-5733 
"DEL PEAK 42(21Q11.2) WILD-TYPE" "DEL PEAK 42(21Q11.2) WILD-TYPE" 
                    TCGA-CG-5734                     TCGA-D7-5577 
"DEL PEAK 42(21Q11.2) WILD-TYPE" "DEL PEAK 42(21Q11.2) WILD-TYPE" 
                    TCGA-D7-5578                     TCGA-D7-5579 
"DEL PEAK 42(21Q11.2) WILD-TYPE"   "DEL PEAK 42(21Q11.2) MUTATED" 
                    TCGA-D7-6518                     TCGA-D7-6519 
  "DEL PEAK 42(21Q11.2) MUTATED"   "DEL PEAK 42(21Q11.2) MUTATED" 
                    TCGA-D7-6520                     TCGA-D7-6521 
"DEL PEAK 42(21Q11.2) WILD-TYPE" "DEL PEAK 42(21Q11.2) WILD-TYPE" 
                    TCGA-D7-6522                     TCGA-D7-6524 
"DEL PEAK 42(21Q11.2) WILD-TYPE" "DEL PEAK 42(21Q11.2) WILD-TYPE" 
                    TCGA-D7-6525                     TCGA-D7-6526 
"DEL PEAK 42(21Q11.2) WILD-TYPE"   "DEL PEAK 42(21Q11.2) MUTATED" 
                    TCGA-D7-6527                     TCGA-D7-6528 
"DEL PEAK 42(21Q11.2) WILD-TYPE" "DEL PEAK 42(21Q11.2) WILD-TYPE" 
                    TCGA-D7-6815                     TCGA-D7-6817 
  "DEL PEAK 42(21Q11.2) MUTATED"   "DEL PEAK 42(21Q11.2) MUTATED" 
                    TCGA-D7-6818                     TCGA-D7-6820 
"DEL PEAK 42(21Q11.2) WILD-TYPE"   "DEL PEAK 42(21Q11.2) MUTATED" 
                    TCGA-D7-6822                     TCGA-EQ-5647 
  "DEL PEAK 42(21Q11.2) MUTATED"   "DEL PEAK 42(21Q11.2) MUTATED" 
                    TCGA-EQ-8122                     TCGA-F1-6177 
"DEL PEAK 42(21Q11.2) WILD-TYPE" "DEL PEAK 42(21Q11.2) WILD-TYPE" 
                    TCGA-F1-6874                     TCGA-F1-6875 
"DEL PEAK 42(21Q11.2) WILD-TYPE"   "DEL PEAK 42(21Q11.2) MUTATED" 
                    TCGA-FP-7735                     TCGA-FP-7829 
"DEL PEAK 42(21Q11.2) WILD-TYPE"   "DEL PEAK 42(21Q11.2) MUTATED" 
                    TCGA-FP-7916                     TCGA-FP-7998 
"DEL PEAK 42(21Q11.2) WILD-TYPE" "DEL PEAK 42(21Q11.2) WILD-TYPE" 
                    TCGA-HJ-7597                     TCGA-IN-7806 
  "DEL PEAK 42(21Q11.2) MUTATED"   "DEL PEAK 42(21Q11.2) MUTATED" 
                    TCGA-IN-7808                     TCGA-IP-7968 
"DEL PEAK 42(21Q11.2) WILD-TYPE"   "DEL PEAK 42(21Q11.2) MUTATED" 
                    TCGA-B7-5816                     TCGA-B7-5818 
"DEL PEAK 42(21Q11.2) WILD-TYPE"   "DEL PEAK 42(21Q11.2) MUTATED" 
                    TCGA-BR-6452                     TCGA-BR-6455 
"DEL PEAK 42(21Q11.2) WILD-TYPE" "DEL PEAK 42(21Q11.2) WILD-TYPE" 
                    TCGA-BR-6457                     TCGA-BR-6458 
  "DEL PEAK 42(21Q11.2) MUTATED"   "DEL PEAK 42(21Q11.2) MUTATED" 
                    TCGA-BR-6563                     TCGA-BR-6564 
"DEL PEAK 42(21Q11.2) WILD-TYPE"   "DEL PEAK 42(21Q11.2) MUTATED" 
                    TCGA-BR-6565                     TCGA-BR-6566 
  "DEL PEAK 42(21Q11.2) MUTATED" "DEL PEAK 42(21Q11.2) WILD-TYPE" 
                    TCGA-BR-6705                     TCGA-BR-6706 
"DEL PEAK 42(21Q11.2) WILD-TYPE" "DEL PEAK 42(21Q11.2) WILD-TYPE" 
                    TCGA-BR-6707                     TCGA-BR-6709 
"DEL PEAK 42(21Q11.2) WILD-TYPE" "DEL PEAK 42(21Q11.2) WILD-TYPE" 
                    TCGA-BR-6710                     TCGA-BR-6801 
"DEL PEAK 42(21Q11.2) WILD-TYPE" "DEL PEAK 42(21Q11.2) WILD-TYPE" 
                    TCGA-BR-6802                     TCGA-BR-6803 
"DEL PEAK 42(21Q11.2) WILD-TYPE"   "DEL PEAK 42(21Q11.2) MUTATED" 
                    TCGA-BR-6852                     TCGA-BR-7196 
"DEL PEAK 42(21Q11.2) WILD-TYPE" "DEL PEAK 42(21Q11.2) WILD-TYPE" 
                    TCGA-BR-7197                     TCGA-BR-7703 
"DEL PEAK 42(21Q11.2) WILD-TYPE" "DEL PEAK 42(21Q11.2) WILD-TYPE" 
                    TCGA-BR-7704                     TCGA-BR-7707 
  "DEL PEAK 42(21Q11.2) MUTATED" "DEL PEAK 42(21Q11.2) WILD-TYPE" 
                    TCGA-BR-7715                     TCGA-BR-7716 
  "DEL PEAK 42(21Q11.2) MUTATED"   "DEL PEAK 42(21Q11.2) MUTATED" 
                    TCGA-BR-7717                     TCGA-BR-7722 
"DEL PEAK 42(21Q11.2) WILD-TYPE" "DEL PEAK 42(21Q11.2) WILD-TYPE" 
                    TCGA-BR-7723                     TCGA-BR-7851 
  "DEL PEAK 42(21Q11.2) MUTATED" "DEL PEAK 42(21Q11.2) WILD-TYPE" 
                    TCGA-BR-7901                     TCGA-BR-7957 
"DEL PEAK 42(21Q11.2) WILD-TYPE" "DEL PEAK 42(21Q11.2) WILD-TYPE" 
                    TCGA-BR-7958                     TCGA-BR-7959 
"DEL PEAK 42(21Q11.2) WILD-TYPE" "DEL PEAK 42(21Q11.2) WILD-TYPE" 
                    TCGA-BR-8059                     TCGA-BR-8060 
"DEL PEAK 42(21Q11.2) WILD-TYPE" "DEL PEAK 42(21Q11.2) WILD-TYPE" 
                    TCGA-BR-8077                     TCGA-BR-8078 
"DEL PEAK 42(21Q11.2) WILD-TYPE" "DEL PEAK 42(21Q11.2) WILD-TYPE" 
                    TCGA-BR-8080                     TCGA-BR-8081 
"DEL PEAK 42(21Q11.2) WILD-TYPE" "DEL PEAK 42(21Q11.2) WILD-TYPE" 
                    TCGA-BR-8284                     TCGA-BR-8285 
"DEL PEAK 42(21Q11.2) WILD-TYPE" "DEL PEAK 42(21Q11.2) WILD-TYPE" 
                    TCGA-BR-8286                     TCGA-BR-8289 
"DEL PEAK 42(21Q11.2) WILD-TYPE" "DEL PEAK 42(21Q11.2) WILD-TYPE" 
                    TCGA-BR-8291                     TCGA-BR-8295 
"DEL PEAK 42(21Q11.2) WILD-TYPE" "DEL PEAK 42(21Q11.2) WILD-TYPE" 
                    TCGA-BR-8296                     TCGA-BR-8297 
"DEL PEAK 42(21Q11.2) WILD-TYPE" "DEL PEAK 42(21Q11.2) WILD-TYPE" 
                    TCGA-CD-5798                     TCGA-CD-5799 
"DEL PEAK 42(21Q11.2) WILD-TYPE" "DEL PEAK 42(21Q11.2) WILD-TYPE" 
                    TCGA-CD-5800                     TCGA-CD-5801 
"DEL PEAK 42(21Q11.2) WILD-TYPE" "DEL PEAK 42(21Q11.2) WILD-TYPE" 
                    TCGA-CD-5802                     TCGA-CD-5803 
"DEL PEAK 42(21Q11.2) WILD-TYPE" "DEL PEAK 42(21Q11.2) WILD-TYPE" 
                    TCGA-CG-4300                     TCGA-CG-4301 
  "DEL PEAK 42(21Q11.2) MUTATED" "DEL PEAK 42(21Q11.2) WILD-TYPE" 
                    TCGA-CG-4304                     TCGA-CG-4305 
"DEL PEAK 42(21Q11.2) WILD-TYPE" "DEL PEAK 42(21Q11.2) WILD-TYPE" 
                    TCGA-CG-4306                     TCGA-CG-4436 
"DEL PEAK 42(21Q11.2) WILD-TYPE" "DEL PEAK 42(21Q11.2) WILD-TYPE" 
                    TCGA-CG-4437                     TCGA-CG-4438 
"DEL PEAK 42(21Q11.2) WILD-TYPE"   "DEL PEAK 42(21Q11.2) MUTATED" 
                    TCGA-CG-4440                     TCGA-CG-4441 
  "DEL PEAK 42(21Q11.2) MUTATED" "DEL PEAK 42(21Q11.2) WILD-TYPE" 
                    TCGA-CG-4443                     TCGA-CG-4444 
"DEL PEAK 42(21Q11.2) WILD-TYPE"   "DEL PEAK 42(21Q11.2) MUTATED" 
                    TCGA-CG-4449                     TCGA-CG-4455 
"DEL PEAK 42(21Q11.2) WILD-TYPE"   "DEL PEAK 42(21Q11.2) MUTATED" 
                    TCGA-CG-4460                     TCGA-CG-4462 
"DEL PEAK 42(21Q11.2) WILD-TYPE" "DEL PEAK 42(21Q11.2) WILD-TYPE" 
                    TCGA-CG-4465                     TCGA-CG-4466 
"DEL PEAK 42(21Q11.2) WILD-TYPE"   "DEL PEAK 42(21Q11.2) MUTATED" 
                    TCGA-CG-4469                     TCGA-CG-4472 
  "DEL PEAK 42(21Q11.2) MUTATED" "DEL PEAK 42(21Q11.2) WILD-TYPE" 
                    TCGA-CG-4474                     TCGA-CG-4477 
"DEL PEAK 42(21Q11.2) WILD-TYPE"   "DEL PEAK 42(21Q11.2) MUTATED" 
                    TCGA-CG-5716                     TCGA-CG-5717 
"DEL PEAK 42(21Q11.2) WILD-TYPE"   "DEL PEAK 42(21Q11.2) MUTATED" 
                    TCGA-CG-5718                     TCGA-CG-5719 
  "DEL PEAK 42(21Q11.2) MUTATED"   "DEL PEAK 42(21Q11.2) MUTATED" 
                    TCGA-CG-5720                     TCGA-CG-5721 
"DEL PEAK 42(21Q11.2) WILD-TYPE" "DEL PEAK 42(21Q11.2) WILD-TYPE" 
                    TCGA-CG-5722                     TCGA-CG-5723 
"DEL PEAK 42(21Q11.2) WILD-TYPE" "DEL PEAK 42(21Q11.2) WILD-TYPE" 
                    TCGA-CG-5724                     TCGA-CG-5725 
  "DEL PEAK 42(21Q11.2) MUTATED" "DEL PEAK 42(21Q11.2) WILD-TYPE" 
                    TCGA-CG-5726                     TCGA-CG-5727 
"DEL PEAK 42(21Q11.2) WILD-TYPE" "DEL PEAK 42(21Q11.2) WILD-TYPE" 
                    TCGA-CG-5728                     TCGA-CG-5730 
  "DEL PEAK 42(21Q11.2) MUTATED"   "DEL PEAK 42(21Q11.2) MUTATED" 
                    TCGA-CG-5732                     TCGA-CG-5733 
"DEL PEAK 42(21Q11.2) WILD-TYPE" "DEL PEAK 42(21Q11.2) WILD-TYPE" 
                    TCGA-CG-5734                     TCGA-D7-5577 
"DEL PEAK 42(21Q11.2) WILD-TYPE" "DEL PEAK 42(21Q11.2) WILD-TYPE" 
                    TCGA-D7-5578                     TCGA-D7-5579 
"DEL PEAK 42(21Q11.2) WILD-TYPE"   "DEL PEAK 42(21Q11.2) MUTATED" 
                    TCGA-D7-6518                     TCGA-D7-6519 
  "DEL PEAK 42(21Q11.2) MUTATED"   "DEL PEAK 42(21Q11.2) MUTATED" 
                    TCGA-D7-6520                     TCGA-D7-6521 
"DEL PEAK 42(21Q11.2) WILD-TYPE" "DEL PEAK 42(21Q11.2) WILD-TYPE" 
                    TCGA-D7-6522                     TCGA-D7-6524 
"DEL PEAK 42(21Q11.2) WILD-TYPE" "DEL PEAK 42(21Q11.2) WILD-TYPE" 
                    TCGA-D7-6525                     TCGA-D7-6526 
"DEL PEAK 42(21Q11.2) WILD-TYPE"   "DEL PEAK 42(21Q11.2) MUTATED" 
                    TCGA-D7-6527                     TCGA-D7-6528 
"DEL PEAK 42(21Q11.2) WILD-TYPE" "DEL PEAK 42(21Q11.2) WILD-TYPE" 
                    TCGA-D7-6815                     TCGA-D7-6817 
  "DEL PEAK 42(21Q11.2) MUTATED"   "DEL PEAK 42(21Q11.2) MUTATED" 
                    TCGA-D7-6818                     TCGA-D7-6820 
"DEL PEAK 42(21Q11.2) WILD-TYPE"   "DEL PEAK 42(21Q11.2) MUTATED" 
                    TCGA-D7-6822                     TCGA-EQ-5647 
  "DEL PEAK 42(21Q11.2) MUTATED"   "DEL PEAK 42(21Q11.2) MUTATED" 
                    TCGA-EQ-8122                     TCGA-F1-6177 
"DEL PEAK 42(21Q11.2) WILD-TYPE" "DEL PEAK 42(21Q11.2) WILD-TYPE" 
                    TCGA-F1-6874                     TCGA-F1-6875 
"DEL PEAK 42(21Q11.2) WILD-TYPE"   "DEL PEAK 42(21Q11.2) MUTATED" 
                    TCGA-FP-7735                     TCGA-FP-7829 
"DEL PEAK 42(21Q11.2) WILD-TYPE"   "DEL PEAK 42(21Q11.2) MUTATED" 
                    TCGA-FP-7916                     TCGA-FP-7998 
"DEL PEAK 42(21Q11.2) WILD-TYPE" "DEL PEAK 42(21Q11.2) WILD-TYPE" 
                    TCGA-HJ-7597                     TCGA-IN-7806 
  "DEL PEAK 42(21Q11.2) MUTATED"   "DEL PEAK 42(21Q11.2) MUTATED" 
                    TCGA-IN-7808                     TCGA-IP-7968 
"DEL PEAK 42(21Q11.2) WILD-TYPE"   "DEL PEAK 42(21Q11.2) MUTATED" 
[1] "hr=" "1.1"
D68V2, continuous
D68V3, binary
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  DEL PEAK 42(21Q11.2) MUTATED     22   28
  DEL PEAK 42(21Q11.2) WILD-TYPE   43   68
        clus
vv       DEL PEAK 42(21Q11.2) MUTATED DEL PEAK 42(21Q11.2) WILD-TYPE
  FEMALE                           22                             43
  MALE                             28                             68
D68V4, multiclass
D68V5, multiclass
    clus
vv   DEL PEAK 42(21Q11.2) MUTATED DEL PEAK 42(21Q11.2) WILD-TYPE
  T1                            0                              6
  T2                           19                             34
  T3                           23                             36
  T4                            5                             28
D68V6, multiclass
    clus
vv   DEL PEAK 42(21Q11.2) MUTATED DEL PEAK 42(21Q11.2) WILD-TYPE
  N0                           14                             36
  N1                           17                             40
  N2                            8                             16
  N3                            8                             11
D68V7, multiclass
    clus
vv   DEL PEAK 42(21Q11.2) MUTATED DEL PEAK 42(21Q11.2) WILD-TYPE
  M0                           40                             92
  M1                            5                             13
  MX                            5                              6
D68V8, multiclass
     clus
vv    DEL PEAK 42(21Q11.2) MUTATED DEL PEAK 42(21Q11.2) WILD-TYPE
  I                              8                             17
  II                            13                             30
  III                           15                             33
  IV                            10                             19
D68V9, binary
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  DEL PEAK 42(21Q11.2) MUTATED     48    2
  DEL PEAK 42(21Q11.2) WILD-TYPE  108    3
     clus
vv    DEL PEAK 42(21Q11.2) MUTATED DEL PEAK 42(21Q11.2) WILD-TYPE
  NO                             2                              3
  YES                           48                            108

Clustering(69) Variable = Del Peak 43(22q13.31) mutation analysis
D69V1, survival
                     TCGA-B7-5816                      TCGA-B7-5818 
"DEL PEAK 43(22Q13.31) WILD-TYPE" "DEL PEAK 43(22Q13.31) WILD-TYPE" 
                     TCGA-BR-6452                      TCGA-BR-6455 
"DEL PEAK 43(22Q13.31) WILD-TYPE" "DEL PEAK 43(22Q13.31) WILD-TYPE" 
                     TCGA-BR-6457                      TCGA-BR-6458 
"DEL PEAK 43(22Q13.31) WILD-TYPE"   "DEL PEAK 43(22Q13.31) MUTATED" 
                     TCGA-BR-6563                      TCGA-BR-6564 
"DEL PEAK 43(22Q13.31) WILD-TYPE"   "DEL PEAK 43(22Q13.31) MUTATED" 
                     TCGA-BR-6565                      TCGA-BR-6566 
  "DEL PEAK 43(22Q13.31) MUTATED" "DEL PEAK 43(22Q13.31) WILD-TYPE" 
                     TCGA-BR-6705                      TCGA-BR-6706 
"DEL PEAK 43(22Q13.31) WILD-TYPE" "DEL PEAK 43(22Q13.31) WILD-TYPE" 
                     TCGA-BR-6707                      TCGA-BR-6709 
"DEL PEAK 43(22Q13.31) WILD-TYPE"   "DEL PEAK 43(22Q13.31) MUTATED" 
                     TCGA-BR-6710                      TCGA-BR-6801 
"DEL PEAK 43(22Q13.31) WILD-TYPE" "DEL PEAK 43(22Q13.31) WILD-TYPE" 
                     TCGA-BR-6802                      TCGA-BR-6803 
"DEL PEAK 43(22Q13.31) WILD-TYPE" "DEL PEAK 43(22Q13.31) WILD-TYPE" 
                     TCGA-BR-6852                      TCGA-BR-7196 
"DEL PEAK 43(22Q13.31) WILD-TYPE" "DEL PEAK 43(22Q13.31) WILD-TYPE" 
                     TCGA-BR-7197                      TCGA-BR-7703 
  "DEL PEAK 43(22Q13.31) MUTATED" "DEL PEAK 43(22Q13.31) WILD-TYPE" 
                     TCGA-BR-7704                      TCGA-BR-7707 
"DEL PEAK 43(22Q13.31) WILD-TYPE" "DEL PEAK 43(22Q13.31) WILD-TYPE" 
                     TCGA-BR-7715                      TCGA-BR-7716 
  "DEL PEAK 43(22Q13.31) MUTATED" "DEL PEAK 43(22Q13.31) WILD-TYPE" 
                     TCGA-BR-7717                      TCGA-BR-7722 
"DEL PEAK 43(22Q13.31) WILD-TYPE" "DEL PEAK 43(22Q13.31) WILD-TYPE" 
                     TCGA-BR-7723                      TCGA-BR-7851 
"DEL PEAK 43(22Q13.31) WILD-TYPE" "DEL PEAK 43(22Q13.31) WILD-TYPE" 
                     TCGA-BR-7901                      TCGA-BR-7957 
"DEL PEAK 43(22Q13.31) WILD-TYPE" "DEL PEAK 43(22Q13.31) WILD-TYPE" 
                     TCGA-BR-7958                      TCGA-BR-7959 
"DEL PEAK 43(22Q13.31) WILD-TYPE" "DEL PEAK 43(22Q13.31) WILD-TYPE" 
                     TCGA-BR-8059                      TCGA-BR-8060 
"DEL PEAK 43(22Q13.31) WILD-TYPE" "DEL PEAK 43(22Q13.31) WILD-TYPE" 
                     TCGA-BR-8077                      TCGA-BR-8078 
"DEL PEAK 43(22Q13.31) WILD-TYPE" "DEL PEAK 43(22Q13.31) WILD-TYPE" 
                     TCGA-BR-8080                      TCGA-BR-8081 
"DEL PEAK 43(22Q13.31) WILD-TYPE" "DEL PEAK 43(22Q13.31) WILD-TYPE" 
                     TCGA-BR-8284                      TCGA-BR-8285 
"DEL PEAK 43(22Q13.31) WILD-TYPE" "DEL PEAK 43(22Q13.31) WILD-TYPE" 
                     TCGA-BR-8286                      TCGA-BR-8289 
"DEL PEAK 43(22Q13.31) WILD-TYPE" "DEL PEAK 43(22Q13.31) WILD-TYPE" 
                     TCGA-BR-8291                      TCGA-BR-8295 
"DEL PEAK 43(22Q13.31) WILD-TYPE" "DEL PEAK 43(22Q13.31) WILD-TYPE" 
                     TCGA-BR-8296                      TCGA-BR-8297 
"DEL PEAK 43(22Q13.31) WILD-TYPE" "DEL PEAK 43(22Q13.31) WILD-TYPE" 
                     TCGA-CD-5798                      TCGA-CD-5799 
"DEL PEAK 43(22Q13.31) WILD-TYPE"   "DEL PEAK 43(22Q13.31) MUTATED" 
                     TCGA-CD-5800                      TCGA-CD-5801 
  "DEL PEAK 43(22Q13.31) MUTATED" "DEL PEAK 43(22Q13.31) WILD-TYPE" 
                     TCGA-CD-5802                      TCGA-CD-5803 
"DEL PEAK 43(22Q13.31) WILD-TYPE" "DEL PEAK 43(22Q13.31) WILD-TYPE" 
                     TCGA-CG-4300                      TCGA-CG-4301 
"DEL PEAK 43(22Q13.31) WILD-TYPE"   "DEL PEAK 43(22Q13.31) MUTATED" 
                     TCGA-CG-4304                      TCGA-CG-4305 
"DEL PEAK 43(22Q13.31) WILD-TYPE" "DEL PEAK 43(22Q13.31) WILD-TYPE" 
                     TCGA-CG-4306                      TCGA-CG-4436 
"DEL PEAK 43(22Q13.31) WILD-TYPE" "DEL PEAK 43(22Q13.31) WILD-TYPE" 
                     TCGA-CG-4437                      TCGA-CG-4438 
  "DEL PEAK 43(22Q13.31) MUTATED"   "DEL PEAK 43(22Q13.31) MUTATED" 
                     TCGA-CG-4440                      TCGA-CG-4441 
  "DEL PEAK 43(22Q13.31) MUTATED"   "DEL PEAK 43(22Q13.31) MUTATED" 
                     TCGA-CG-4443                      TCGA-CG-4444 
"DEL PEAK 43(22Q13.31) WILD-TYPE"   "DEL PEAK 43(22Q13.31) MUTATED" 
                     TCGA-CG-4449                      TCGA-CG-4455 
  "DEL PEAK 43(22Q13.31) MUTATED" "DEL PEAK 43(22Q13.31) WILD-TYPE" 
                     TCGA-CG-4460                      TCGA-CG-4462 
  "DEL PEAK 43(22Q13.31) MUTATED" "DEL PEAK 43(22Q13.31) WILD-TYPE" 
                     TCGA-CG-4465                      TCGA-CG-4466 
"DEL PEAK 43(22Q13.31) WILD-TYPE"   "DEL PEAK 43(22Q13.31) MUTATED" 
                     TCGA-CG-4469                      TCGA-CG-4472 
"DEL PEAK 43(22Q13.31) WILD-TYPE" "DEL PEAK 43(22Q13.31) WILD-TYPE" 
                     TCGA-CG-4474                      TCGA-CG-4477 
"DEL PEAK 43(22Q13.31) WILD-TYPE"   "DEL PEAK 43(22Q13.31) MUTATED" 
                     TCGA-CG-5716                      TCGA-CG-5717 
"DEL PEAK 43(22Q13.31) WILD-TYPE" "DEL PEAK 43(22Q13.31) WILD-TYPE" 
                     TCGA-CG-5718                      TCGA-CG-5719 
"DEL PEAK 43(22Q13.31) WILD-TYPE" "DEL PEAK 43(22Q13.31) WILD-TYPE" 
                     TCGA-CG-5720                      TCGA-CG-5721 
"DEL PEAK 43(22Q13.31) WILD-TYPE" "DEL PEAK 43(22Q13.31) WILD-TYPE" 
                     TCGA-CG-5722                      TCGA-CG-5723 
"DEL PEAK 43(22Q13.31) WILD-TYPE" "DEL PEAK 43(22Q13.31) WILD-TYPE" 
                     TCGA-CG-5724                      TCGA-CG-5725 
  "DEL PEAK 43(22Q13.31) MUTATED"   "DEL PEAK 43(22Q13.31) MUTATED" 
                     TCGA-CG-5726                      TCGA-CG-5727 
"DEL PEAK 43(22Q13.31) WILD-TYPE" "DEL PEAK 43(22Q13.31) WILD-TYPE" 
                     TCGA-CG-5728                      TCGA-CG-5730 
"DEL PEAK 43(22Q13.31) WILD-TYPE" "DEL PEAK 43(22Q13.31) WILD-TYPE" 
                     TCGA-CG-5732                      TCGA-CG-5733 
  "DEL PEAK 43(22Q13.31) MUTATED" "DEL PEAK 43(22Q13.31) WILD-TYPE" 
                     TCGA-CG-5734                      TCGA-D7-5577 
"DEL PEAK 43(22Q13.31) WILD-TYPE" "DEL PEAK 43(22Q13.31) WILD-TYPE" 
                     TCGA-D7-5578                      TCGA-D7-5579 
  "DEL PEAK 43(22Q13.31) MUTATED"   "DEL PEAK 43(22Q13.31) MUTATED" 
                     TCGA-D7-6518                      TCGA-D7-6519 
"DEL PEAK 43(22Q13.31) WILD-TYPE"   "DEL PEAK 43(22Q13.31) MUTATED" 
                     TCGA-D7-6520                      TCGA-D7-6521 
"DEL PEAK 43(22Q13.31) WILD-TYPE" "DEL PEAK 43(22Q13.31) WILD-TYPE" 
                     TCGA-D7-6522                      TCGA-D7-6524 
"DEL PEAK 43(22Q13.31) WILD-TYPE" "DEL PEAK 43(22Q13.31) WILD-TYPE" 
                     TCGA-D7-6525                      TCGA-D7-6526 
  "DEL PEAK 43(22Q13.31) MUTATED"   "DEL PEAK 43(22Q13.31) MUTATED" 
                     TCGA-D7-6527                      TCGA-D7-6528 
  "DEL PEAK 43(22Q13.31) MUTATED"   "DEL PEAK 43(22Q13.31) MUTATED" 
                     TCGA-D7-6815                      TCGA-D7-6817 
"DEL PEAK 43(22Q13.31) WILD-TYPE"   "DEL PEAK 43(22Q13.31) MUTATED" 
                     TCGA-D7-6818                      TCGA-D7-6820 
"DEL PEAK 43(22Q13.31) WILD-TYPE"   "DEL PEAK 43(22Q13.31) MUTATED" 
                     TCGA-D7-6822                      TCGA-EQ-5647 
  "DEL PEAK 43(22Q13.31) MUTATED"   "DEL PEAK 43(22Q13.31) MUTATED" 
                     TCGA-EQ-8122                      TCGA-F1-6177 
  "DEL PEAK 43(22Q13.31) MUTATED" "DEL PEAK 43(22Q13.31) WILD-TYPE" 
                     TCGA-F1-6874                      TCGA-F1-6875 
"DEL PEAK 43(22Q13.31) WILD-TYPE" "DEL PEAK 43(22Q13.31) WILD-TYPE" 
                     TCGA-FP-7735                      TCGA-FP-7829 
"DEL PEAK 43(22Q13.31) WILD-TYPE"   "DEL PEAK 43(22Q13.31) MUTATED" 
                     TCGA-FP-7916                      TCGA-FP-7998 
"DEL PEAK 43(22Q13.31) WILD-TYPE" "DEL PEAK 43(22Q13.31) WILD-TYPE" 
                     TCGA-HJ-7597                      TCGA-IN-7806 
  "DEL PEAK 43(22Q13.31) MUTATED" "DEL PEAK 43(22Q13.31) WILD-TYPE" 
                     TCGA-IN-7808                      TCGA-IP-7968 
"DEL PEAK 43(22Q13.31) WILD-TYPE"   "DEL PEAK 43(22Q13.31) MUTATED" 
                     TCGA-B7-5816                      TCGA-B7-5818 
"DEL PEAK 43(22Q13.31) WILD-TYPE" "DEL PEAK 43(22Q13.31) WILD-TYPE" 
                     TCGA-BR-6452                      TCGA-BR-6455 
"DEL PEAK 43(22Q13.31) WILD-TYPE" "DEL PEAK 43(22Q13.31) WILD-TYPE" 
                     TCGA-BR-6457                      TCGA-BR-6458 
"DEL PEAK 43(22Q13.31) WILD-TYPE"   "DEL PEAK 43(22Q13.31) MUTATED" 
                     TCGA-BR-6563                      TCGA-BR-6564 
"DEL PEAK 43(22Q13.31) WILD-TYPE"   "DEL PEAK 43(22Q13.31) MUTATED" 
                     TCGA-BR-6565                      TCGA-BR-6566 
  "DEL PEAK 43(22Q13.31) MUTATED" "DEL PEAK 43(22Q13.31) WILD-TYPE" 
                     TCGA-BR-6705                      TCGA-BR-6706 
"DEL PEAK 43(22Q13.31) WILD-TYPE" "DEL PEAK 43(22Q13.31) WILD-TYPE" 
                     TCGA-BR-6707                      TCGA-BR-6709 
"DEL PEAK 43(22Q13.31) WILD-TYPE"   "DEL PEAK 43(22Q13.31) MUTATED" 
                     TCGA-BR-6710                      TCGA-BR-6801 
"DEL PEAK 43(22Q13.31) WILD-TYPE" "DEL PEAK 43(22Q13.31) WILD-TYPE" 
                     TCGA-BR-6802                      TCGA-BR-6803 
"DEL PEAK 43(22Q13.31) WILD-TYPE" "DEL PEAK 43(22Q13.31) WILD-TYPE" 
                     TCGA-BR-6852                      TCGA-BR-7196 
"DEL PEAK 43(22Q13.31) WILD-TYPE" "DEL PEAK 43(22Q13.31) WILD-TYPE" 
                     TCGA-BR-7197                      TCGA-BR-7703 
  "DEL PEAK 43(22Q13.31) MUTATED" "DEL PEAK 43(22Q13.31) WILD-TYPE" 
                     TCGA-BR-7704                      TCGA-BR-7707 
"DEL PEAK 43(22Q13.31) WILD-TYPE" "DEL PEAK 43(22Q13.31) WILD-TYPE" 
                     TCGA-BR-7715                      TCGA-BR-7716 
  "DEL PEAK 43(22Q13.31) MUTATED" "DEL PEAK 43(22Q13.31) WILD-TYPE" 
                     TCGA-BR-7717                      TCGA-BR-7722 
"DEL PEAK 43(22Q13.31) WILD-TYPE" "DEL PEAK 43(22Q13.31) WILD-TYPE" 
                     TCGA-BR-7723                      TCGA-BR-7851 
"DEL PEAK 43(22Q13.31) WILD-TYPE" "DEL PEAK 43(22Q13.31) WILD-TYPE" 
                     TCGA-BR-7901                      TCGA-BR-7957 
"DEL PEAK 43(22Q13.31) WILD-TYPE" "DEL PEAK 43(22Q13.31) WILD-TYPE" 
                     TCGA-BR-7958                      TCGA-BR-7959 
"DEL PEAK 43(22Q13.31) WILD-TYPE" "DEL PEAK 43(22Q13.31) WILD-TYPE" 
                     TCGA-BR-8059                      TCGA-BR-8060 
"DEL PEAK 43(22Q13.31) WILD-TYPE" "DEL PEAK 43(22Q13.31) WILD-TYPE" 
                     TCGA-BR-8077                      TCGA-BR-8078 
"DEL PEAK 43(22Q13.31) WILD-TYPE" "DEL PEAK 43(22Q13.31) WILD-TYPE" 
                     TCGA-BR-8080                      TCGA-BR-8081 
"DEL PEAK 43(22Q13.31) WILD-TYPE" "DEL PEAK 43(22Q13.31) WILD-TYPE" 
                     TCGA-BR-8284                      TCGA-BR-8285 
"DEL PEAK 43(22Q13.31) WILD-TYPE" "DEL PEAK 43(22Q13.31) WILD-TYPE" 
                     TCGA-BR-8286                      TCGA-BR-8289 
"DEL PEAK 43(22Q13.31) WILD-TYPE" "DEL PEAK 43(22Q13.31) WILD-TYPE" 
                     TCGA-BR-8291                      TCGA-BR-8295 
"DEL PEAK 43(22Q13.31) WILD-TYPE" "DEL PEAK 43(22Q13.31) WILD-TYPE" 
                     TCGA-BR-8296                      TCGA-BR-8297 
"DEL PEAK 43(22Q13.31) WILD-TYPE" "DEL PEAK 43(22Q13.31) WILD-TYPE" 
                     TCGA-CD-5798                      TCGA-CD-5799 
"DEL PEAK 43(22Q13.31) WILD-TYPE"   "DEL PEAK 43(22Q13.31) MUTATED" 
                     TCGA-CD-5800                      TCGA-CD-5801 
  "DEL PEAK 43(22Q13.31) MUTATED" "DEL PEAK 43(22Q13.31) WILD-TYPE" 
                     TCGA-CD-5802                      TCGA-CD-5803 
"DEL PEAK 43(22Q13.31) WILD-TYPE" "DEL PEAK 43(22Q13.31) WILD-TYPE" 
                     TCGA-CG-4300                      TCGA-CG-4301 
"DEL PEAK 43(22Q13.31) WILD-TYPE"   "DEL PEAK 43(22Q13.31) MUTATED" 
                     TCGA-CG-4304                      TCGA-CG-4305 
"DEL PEAK 43(22Q13.31) WILD-TYPE" "DEL PEAK 43(22Q13.31) WILD-TYPE" 
                     TCGA-CG-4306                      TCGA-CG-4436 
"DEL PEAK 43(22Q13.31) WILD-TYPE" "DEL PEAK 43(22Q13.31) WILD-TYPE" 
                     TCGA-CG-4437                      TCGA-CG-4438 
  "DEL PEAK 43(22Q13.31) MUTATED"   "DEL PEAK 43(22Q13.31) MUTATED" 
                     TCGA-CG-4440                      TCGA-CG-4441 
  "DEL PEAK 43(22Q13.31) MUTATED"   "DEL PEAK 43(22Q13.31) MUTATED" 
                     TCGA-CG-4443                      TCGA-CG-4444 
"DEL PEAK 43(22Q13.31) WILD-TYPE"   "DEL PEAK 43(22Q13.31) MUTATED" 
                     TCGA-CG-4449                      TCGA-CG-4455 
  "DEL PEAK 43(22Q13.31) MUTATED" "DEL PEAK 43(22Q13.31) WILD-TYPE" 
                     TCGA-CG-4460                      TCGA-CG-4462 
  "DEL PEAK 43(22Q13.31) MUTATED" "DEL PEAK 43(22Q13.31) WILD-TYPE" 
                     TCGA-CG-4465                      TCGA-CG-4466 
"DEL PEAK 43(22Q13.31) WILD-TYPE"   "DEL PEAK 43(22Q13.31) MUTATED" 
                     TCGA-CG-4469                      TCGA-CG-4472 
"DEL PEAK 43(22Q13.31) WILD-TYPE" "DEL PEAK 43(22Q13.31) WILD-TYPE" 
                     TCGA-CG-4474                      TCGA-CG-4477 
"DEL PEAK 43(22Q13.31) WILD-TYPE"   "DEL PEAK 43(22Q13.31) MUTATED" 
                     TCGA-CG-5716                      TCGA-CG-5717 
"DEL PEAK 43(22Q13.31) WILD-TYPE" "DEL PEAK 43(22Q13.31) WILD-TYPE" 
                     TCGA-CG-5718                      TCGA-CG-5719 
"DEL PEAK 43(22Q13.31) WILD-TYPE" "DEL PEAK 43(22Q13.31) WILD-TYPE" 
                     TCGA-CG-5720                      TCGA-CG-5721 
"DEL PEAK 43(22Q13.31) WILD-TYPE" "DEL PEAK 43(22Q13.31) WILD-TYPE" 
                     TCGA-CG-5722                      TCGA-CG-5723 
"DEL PEAK 43(22Q13.31) WILD-TYPE" "DEL PEAK 43(22Q13.31) WILD-TYPE" 
                     TCGA-CG-5724                      TCGA-CG-5725 
  "DEL PEAK 43(22Q13.31) MUTATED"   "DEL PEAK 43(22Q13.31) MUTATED" 
                     TCGA-CG-5726                      TCGA-CG-5727 
"DEL PEAK 43(22Q13.31) WILD-TYPE" "DEL PEAK 43(22Q13.31) WILD-TYPE" 
                     TCGA-CG-5728                      TCGA-CG-5730 
"DEL PEAK 43(22Q13.31) WILD-TYPE" "DEL PEAK 43(22Q13.31) WILD-TYPE" 
                     TCGA-CG-5732                      TCGA-CG-5733 
  "DEL PEAK 43(22Q13.31) MUTATED" "DEL PEAK 43(22Q13.31) WILD-TYPE" 
                     TCGA-CG-5734                      TCGA-D7-5577 
"DEL PEAK 43(22Q13.31) WILD-TYPE" "DEL PEAK 43(22Q13.31) WILD-TYPE" 
                     TCGA-D7-5578                      TCGA-D7-5579 
  "DEL PEAK 43(22Q13.31) MUTATED"   "DEL PEAK 43(22Q13.31) MUTATED" 
                     TCGA-D7-6518                      TCGA-D7-6519 
"DEL PEAK 43(22Q13.31) WILD-TYPE"   "DEL PEAK 43(22Q13.31) MUTATED" 
                     TCGA-D7-6520                      TCGA-D7-6521 
"DEL PEAK 43(22Q13.31) WILD-TYPE" "DEL PEAK 43(22Q13.31) WILD-TYPE" 
                     TCGA-D7-6522                      TCGA-D7-6524 
"DEL PEAK 43(22Q13.31) WILD-TYPE" "DEL PEAK 43(22Q13.31) WILD-TYPE" 
                     TCGA-D7-6525                      TCGA-D7-6526 
  "DEL PEAK 43(22Q13.31) MUTATED"   "DEL PEAK 43(22Q13.31) MUTATED" 
                     TCGA-D7-6527                      TCGA-D7-6528 
  "DEL PEAK 43(22Q13.31) MUTATED"   "DEL PEAK 43(22Q13.31) MUTATED" 
                     TCGA-D7-6815                      TCGA-D7-6817 
"DEL PEAK 43(22Q13.31) WILD-TYPE"   "DEL PEAK 43(22Q13.31) MUTATED" 
                     TCGA-D7-6818                      TCGA-D7-6820 
"DEL PEAK 43(22Q13.31) WILD-TYPE"   "DEL PEAK 43(22Q13.31) MUTATED" 
                     TCGA-D7-6822                      TCGA-EQ-5647 
  "DEL PEAK 43(22Q13.31) MUTATED"   "DEL PEAK 43(22Q13.31) MUTATED" 
                     TCGA-EQ-8122                      TCGA-F1-6177 
  "DEL PEAK 43(22Q13.31) MUTATED" "DEL PEAK 43(22Q13.31) WILD-TYPE" 
                     TCGA-F1-6874                      TCGA-F1-6875 
"DEL PEAK 43(22Q13.31) WILD-TYPE" "DEL PEAK 43(22Q13.31) WILD-TYPE" 
                     TCGA-FP-7735                      TCGA-FP-7829 
"DEL PEAK 43(22Q13.31) WILD-TYPE"   "DEL PEAK 43(22Q13.31) MUTATED" 
                     TCGA-FP-7916                      TCGA-FP-7998 
"DEL PEAK 43(22Q13.31) WILD-TYPE" "DEL PEAK 43(22Q13.31) WILD-TYPE" 
                     TCGA-HJ-7597                      TCGA-IN-7806 
  "DEL PEAK 43(22Q13.31) MUTATED" "DEL PEAK 43(22Q13.31) WILD-TYPE" 
                     TCGA-IN-7808                      TCGA-IP-7968 
"DEL PEAK 43(22Q13.31) WILD-TYPE"   "DEL PEAK 43(22Q13.31) MUTATED" 
                     TCGA-B7-5816                      TCGA-B7-5818 
"DEL PEAK 43(22Q13.31) WILD-TYPE" "DEL PEAK 43(22Q13.31) WILD-TYPE" 
                     TCGA-BR-6452                      TCGA-BR-6455 
"DEL PEAK 43(22Q13.31) WILD-TYPE" "DEL PEAK 43(22Q13.31) WILD-TYPE" 
                     TCGA-BR-6457                      TCGA-BR-6458 
"DEL PEAK 43(22Q13.31) WILD-TYPE"   "DEL PEAK 43(22Q13.31) MUTATED" 
                     TCGA-BR-6563                      TCGA-BR-6564 
"DEL PEAK 43(22Q13.31) WILD-TYPE"   "DEL PEAK 43(22Q13.31) MUTATED" 
                     TCGA-BR-6565                      TCGA-BR-6566 
  "DEL PEAK 43(22Q13.31) MUTATED" "DEL PEAK 43(22Q13.31) WILD-TYPE" 
                     TCGA-BR-6705                      TCGA-BR-6706 
"DEL PEAK 43(22Q13.31) WILD-TYPE" "DEL PEAK 43(22Q13.31) WILD-TYPE" 
                     TCGA-BR-6707                      TCGA-BR-6709 
"DEL PEAK 43(22Q13.31) WILD-TYPE"   "DEL PEAK 43(22Q13.31) MUTATED" 
                     TCGA-BR-6710                      TCGA-BR-6801 
"DEL PEAK 43(22Q13.31) WILD-TYPE" "DEL PEAK 43(22Q13.31) WILD-TYPE" 
                     TCGA-BR-6802                      TCGA-BR-6803 
"DEL PEAK 43(22Q13.31) WILD-TYPE" "DEL PEAK 43(22Q13.31) WILD-TYPE" 
                     TCGA-BR-6852                      TCGA-BR-7196 
"DEL PEAK 43(22Q13.31) WILD-TYPE" "DEL PEAK 43(22Q13.31) WILD-TYPE" 
                     TCGA-BR-7197                      TCGA-BR-7703 
  "DEL PEAK 43(22Q13.31) MUTATED" "DEL PEAK 43(22Q13.31) WILD-TYPE" 
                     TCGA-BR-7704                      TCGA-BR-7707 
"DEL PEAK 43(22Q13.31) WILD-TYPE" "DEL PEAK 43(22Q13.31) WILD-TYPE" 
                     TCGA-BR-7715                      TCGA-BR-7716 
  "DEL PEAK 43(22Q13.31) MUTATED" "DEL PEAK 43(22Q13.31) WILD-TYPE" 
                     TCGA-BR-7717                      TCGA-BR-7722 
"DEL PEAK 43(22Q13.31) WILD-TYPE" "DEL PEAK 43(22Q13.31) WILD-TYPE" 
                     TCGA-BR-7723                      TCGA-BR-7851 
"DEL PEAK 43(22Q13.31) WILD-TYPE" "DEL PEAK 43(22Q13.31) WILD-TYPE" 
                     TCGA-BR-7901                      TCGA-BR-7957 
"DEL PEAK 43(22Q13.31) WILD-TYPE" "DEL PEAK 43(22Q13.31) WILD-TYPE" 
                     TCGA-BR-7958                      TCGA-BR-7959 
"DEL PEAK 43(22Q13.31) WILD-TYPE" "DEL PEAK 43(22Q13.31) WILD-TYPE" 
                     TCGA-BR-8059                      TCGA-BR-8060 
"DEL PEAK 43(22Q13.31) WILD-TYPE" "DEL PEAK 43(22Q13.31) WILD-TYPE" 
                     TCGA-BR-8077                      TCGA-BR-8078 
"DEL PEAK 43(22Q13.31) WILD-TYPE" "DEL PEAK 43(22Q13.31) WILD-TYPE" 
                     TCGA-BR-8080                      TCGA-BR-8081 
"DEL PEAK 43(22Q13.31) WILD-TYPE" "DEL PEAK 43(22Q13.31) WILD-TYPE" 
                     TCGA-BR-8284                      TCGA-BR-8285 
"DEL PEAK 43(22Q13.31) WILD-TYPE" "DEL PEAK 43(22Q13.31) WILD-TYPE" 
                     TCGA-BR-8286                      TCGA-BR-8289 
"DEL PEAK 43(22Q13.31) WILD-TYPE" "DEL PEAK 43(22Q13.31) WILD-TYPE" 
                     TCGA-BR-8291                      TCGA-BR-8295 
"DEL PEAK 43(22Q13.31) WILD-TYPE" "DEL PEAK 43(22Q13.31) WILD-TYPE" 
                     TCGA-BR-8296                      TCGA-BR-8297 
"DEL PEAK 43(22Q13.31) WILD-TYPE" "DEL PEAK 43(22Q13.31) WILD-TYPE" 
                     TCGA-CD-5798                      TCGA-CD-5799 
"DEL PEAK 43(22Q13.31) WILD-TYPE"   "DEL PEAK 43(22Q13.31) MUTATED" 
                     TCGA-CD-5800                      TCGA-CD-5801 
  "DEL PEAK 43(22Q13.31) MUTATED" "DEL PEAK 43(22Q13.31) WILD-TYPE" 
                     TCGA-CD-5802                      TCGA-CD-5803 
"DEL PEAK 43(22Q13.31) WILD-TYPE" "DEL PEAK 43(22Q13.31) WILD-TYPE" 
                     TCGA-CG-4300                      TCGA-CG-4301 
"DEL PEAK 43(22Q13.31) WILD-TYPE"   "DEL PEAK 43(22Q13.31) MUTATED" 
                     TCGA-CG-4304                      TCGA-CG-4305 
"DEL PEAK 43(22Q13.31) WILD-TYPE" "DEL PEAK 43(22Q13.31) WILD-TYPE" 
                     TCGA-CG-4306                      TCGA-CG-4436 
"DEL PEAK 43(22Q13.31) WILD-TYPE" "DEL PEAK 43(22Q13.31) WILD-TYPE" 
                     TCGA-CG-4437                      TCGA-CG-4438 
  "DEL PEAK 43(22Q13.31) MUTATED"   "DEL PEAK 43(22Q13.31) MUTATED" 
                     TCGA-CG-4440                      TCGA-CG-4441 
  "DEL PEAK 43(22Q13.31) MUTATED"   "DEL PEAK 43(22Q13.31) MUTATED" 
                     TCGA-CG-4443                      TCGA-CG-4444 
"DEL PEAK 43(22Q13.31) WILD-TYPE"   "DEL PEAK 43(22Q13.31) MUTATED" 
                     TCGA-CG-4449                      TCGA-CG-4455 
  "DEL PEAK 43(22Q13.31) MUTATED" "DEL PEAK 43(22Q13.31) WILD-TYPE" 
                     TCGA-CG-4460                      TCGA-CG-4462 
  "DEL PEAK 43(22Q13.31) MUTATED" "DEL PEAK 43(22Q13.31) WILD-TYPE" 
                     TCGA-CG-4465                      TCGA-CG-4466 
"DEL PEAK 43(22Q13.31) WILD-TYPE"   "DEL PEAK 43(22Q13.31) MUTATED" 
                     TCGA-CG-4469                      TCGA-CG-4472 
"DEL PEAK 43(22Q13.31) WILD-TYPE" "DEL PEAK 43(22Q13.31) WILD-TYPE" 
                     TCGA-CG-4474                      TCGA-CG-4477 
"DEL PEAK 43(22Q13.31) WILD-TYPE"   "DEL PEAK 43(22Q13.31) MUTATED" 
                     TCGA-CG-5716                      TCGA-CG-5717 
"DEL PEAK 43(22Q13.31) WILD-TYPE" "DEL PEAK 43(22Q13.31) WILD-TYPE" 
                     TCGA-CG-5718                      TCGA-CG-5719 
"DEL PEAK 43(22Q13.31) WILD-TYPE" "DEL PEAK 43(22Q13.31) WILD-TYPE" 
                     TCGA-CG-5720                      TCGA-CG-5721 
"DEL PEAK 43(22Q13.31) WILD-TYPE" "DEL PEAK 43(22Q13.31) WILD-TYPE" 
                     TCGA-CG-5722                      TCGA-CG-5723 
"DEL PEAK 43(22Q13.31) WILD-TYPE" "DEL PEAK 43(22Q13.31) WILD-TYPE" 
                     TCGA-CG-5724                      TCGA-CG-5725 
  "DEL PEAK 43(22Q13.31) MUTATED"   "DEL PEAK 43(22Q13.31) MUTATED" 
                     TCGA-CG-5726                      TCGA-CG-5727 
"DEL PEAK 43(22Q13.31) WILD-TYPE" "DEL PEAK 43(22Q13.31) WILD-TYPE" 
                     TCGA-CG-5728                      TCGA-CG-5730 
"DEL PEAK 43(22Q13.31) WILD-TYPE" "DEL PEAK 43(22Q13.31) WILD-TYPE" 
                     TCGA-CG-5732                      TCGA-CG-5733 
  "DEL PEAK 43(22Q13.31) MUTATED" "DEL PEAK 43(22Q13.31) WILD-TYPE" 
                     TCGA-CG-5734                      TCGA-D7-5577 
"DEL PEAK 43(22Q13.31) WILD-TYPE" "DEL PEAK 43(22Q13.31) WILD-TYPE" 
                     TCGA-D7-5578                      TCGA-D7-5579 
  "DEL PEAK 43(22Q13.31) MUTATED"   "DEL PEAK 43(22Q13.31) MUTATED" 
                     TCGA-D7-6518                      TCGA-D7-6519 
"DEL PEAK 43(22Q13.31) WILD-TYPE"   "DEL PEAK 43(22Q13.31) MUTATED" 
                     TCGA-D7-6520                      TCGA-D7-6521 
"DEL PEAK 43(22Q13.31) WILD-TYPE" "DEL PEAK 43(22Q13.31) WILD-TYPE" 
                     TCGA-D7-6522                      TCGA-D7-6524 
"DEL PEAK 43(22Q13.31) WILD-TYPE" "DEL PEAK 43(22Q13.31) WILD-TYPE" 
                     TCGA-D7-6525                      TCGA-D7-6526 
  "DEL PEAK 43(22Q13.31) MUTATED"   "DEL PEAK 43(22Q13.31) MUTATED" 
                     TCGA-D7-6527                      TCGA-D7-6528 
  "DEL PEAK 43(22Q13.31) MUTATED"   "DEL PEAK 43(22Q13.31) MUTATED" 
                     TCGA-D7-6815                      TCGA-D7-6817 
"DEL PEAK 43(22Q13.31) WILD-TYPE"   "DEL PEAK 43(22Q13.31) MUTATED" 
                     TCGA-D7-6818                      TCGA-D7-6820 
"DEL PEAK 43(22Q13.31) WILD-TYPE"   "DEL PEAK 43(22Q13.31) MUTATED" 
                     TCGA-D7-6822                      TCGA-EQ-5647 
  "DEL PEAK 43(22Q13.31) MUTATED"   "DEL PEAK 43(22Q13.31) MUTATED" 
                     TCGA-EQ-8122                      TCGA-F1-6177 
  "DEL PEAK 43(22Q13.31) MUTATED" "DEL PEAK 43(22Q13.31) WILD-TYPE" 
                     TCGA-F1-6874                      TCGA-F1-6875 
"DEL PEAK 43(22Q13.31) WILD-TYPE" "DEL PEAK 43(22Q13.31) WILD-TYPE" 
                     TCGA-FP-7735                      TCGA-FP-7829 
"DEL PEAK 43(22Q13.31) WILD-TYPE"   "DEL PEAK 43(22Q13.31) MUTATED" 
                     TCGA-FP-7916                      TCGA-FP-7998 
"DEL PEAK 43(22Q13.31) WILD-TYPE" "DEL PEAK 43(22Q13.31) WILD-TYPE" 
                     TCGA-HJ-7597                      TCGA-IN-7806 
  "DEL PEAK 43(22Q13.31) MUTATED" "DEL PEAK 43(22Q13.31) WILD-TYPE" 
                     TCGA-IN-7808                      TCGA-IP-7968 
"DEL PEAK 43(22Q13.31) WILD-TYPE"   "DEL PEAK 43(22Q13.31) MUTATED" 
[1] "hr=" "1.4"
D69V2, continuous
D69V3, binary
[1] "tbl2"
                                 cls
clus                              [,1] [,2]
  DEL PEAK 43(22Q13.31) MUTATED     21   28
  DEL PEAK 43(22Q13.31) WILD-TYPE   44   68
        clus
vv       DEL PEAK 43(22Q13.31) MUTATED DEL PEAK 43(22Q13.31) WILD-TYPE
  FEMALE                            21                              44
  MALE                              28                              68
D69V4, multiclass
D69V5, multiclass
    clus
vv   DEL PEAK 43(22Q13.31) MUTATED DEL PEAK 43(22Q13.31) WILD-TYPE
  T1                             0                               6
  T2                            21                              32
  T3                            19                              40
  T4                             5                              28
D69V6, multiclass
    clus
vv   DEL PEAK 43(22Q13.31) MUTATED DEL PEAK 43(22Q13.31) WILD-TYPE
  N0                            12                              38
  N1                            18                              39
  N2                             9                              15
  N3                             7                              12
D69V7, multiclass
    clus
vv   DEL PEAK 43(22Q13.31) MUTATED DEL PEAK 43(22Q13.31) WILD-TYPE
  M0                            40                              92
  M1                             5                              13
  MX                             4                               7
D69V8, multiclass
     clus
vv    DEL PEAK 43(22Q13.31) MUTATED DEL PEAK 43(22Q13.31) WILD-TYPE
  I                               8                              17
  II                             14                              29
  III                            14                              34
  IV                              8                              21
D69V9, binary
[1] "tbl2"
                                 cls
clus                              [,1] [,2]
  DEL PEAK 43(22Q13.31) MUTATED     46    3
  DEL PEAK 43(22Q13.31) WILD-TYPE  110    2
     clus
vv    DEL PEAK 43(22Q13.31) MUTATED DEL PEAK 43(22Q13.31) WILD-TYPE
  NO                              3                               2
  YES                            46                             110

Clustering(70) Variable = Del Peak 44(Xp22.2) mutation analysis
D70V1, survival
                   TCGA-B7-5816                    TCGA-B7-5818 
"DEL PEAK 44(XP22.2) WILD-TYPE" "DEL PEAK 44(XP22.2) WILD-TYPE" 
                   TCGA-BR-6452                    TCGA-BR-6455 
"DEL PEAK 44(XP22.2) WILD-TYPE" "DEL PEAK 44(XP22.2) WILD-TYPE" 
                   TCGA-BR-6457                    TCGA-BR-6458 
"DEL PEAK 44(XP22.2) WILD-TYPE"   "DEL PEAK 44(XP22.2) MUTATED" 
                   TCGA-BR-6563                    TCGA-BR-6564 
"DEL PEAK 44(XP22.2) WILD-TYPE" "DEL PEAK 44(XP22.2) WILD-TYPE" 
                   TCGA-BR-6565                    TCGA-BR-6566 
"DEL PEAK 44(XP22.2) WILD-TYPE" "DEL PEAK 44(XP22.2) WILD-TYPE" 
                   TCGA-BR-6705                    TCGA-BR-6706 
"DEL PEAK 44(XP22.2) WILD-TYPE" "DEL PEAK 44(XP22.2) WILD-TYPE" 
                   TCGA-BR-6707                    TCGA-BR-6709 
"DEL PEAK 44(XP22.2) WILD-TYPE" "DEL PEAK 44(XP22.2) WILD-TYPE" 
                   TCGA-BR-6710                    TCGA-BR-6801 
"DEL PEAK 44(XP22.2) WILD-TYPE" "DEL PEAK 44(XP22.2) WILD-TYPE" 
                   TCGA-BR-6802                    TCGA-BR-6803 
"DEL PEAK 44(XP22.2) WILD-TYPE" "DEL PEAK 44(XP22.2) WILD-TYPE" 
                   TCGA-BR-6852                    TCGA-BR-7196 
"DEL PEAK 44(XP22.2) WILD-TYPE" "DEL PEAK 44(XP22.2) WILD-TYPE" 
                   TCGA-BR-7197                    TCGA-BR-7703 
"DEL PEAK 44(XP22.2) WILD-TYPE" "DEL PEAK 44(XP22.2) WILD-TYPE" 
                   TCGA-BR-7704                    TCGA-BR-7707 
"DEL PEAK 44(XP22.2) WILD-TYPE" "DEL PEAK 44(XP22.2) WILD-TYPE" 
                   TCGA-BR-7715                    TCGA-BR-7716 
"DEL PEAK 44(XP22.2) WILD-TYPE"   "DEL PEAK 44(XP22.2) MUTATED" 
                   TCGA-BR-7717                    TCGA-BR-7722 
"DEL PEAK 44(XP22.2) WILD-TYPE" "DEL PEAK 44(XP22.2) WILD-TYPE" 
                   TCGA-BR-7723                    TCGA-BR-7851 
"DEL PEAK 44(XP22.2) WILD-TYPE" "DEL PEAK 44(XP22.2) WILD-TYPE" 
                   TCGA-BR-7901                    TCGA-BR-7957 
"DEL PEAK 44(XP22.2) WILD-TYPE" "DEL PEAK 44(XP22.2) WILD-TYPE" 
                   TCGA-BR-7958                    TCGA-BR-7959 
"DEL PEAK 44(XP22.2) WILD-TYPE" "DEL PEAK 44(XP22.2) WILD-TYPE" 
                   TCGA-BR-8059                    TCGA-BR-8060 
"DEL PEAK 44(XP22.2) WILD-TYPE" "DEL PEAK 44(XP22.2) WILD-TYPE" 
                   TCGA-BR-8077                    TCGA-BR-8078 
"DEL PEAK 44(XP22.2) WILD-TYPE" "DEL PEAK 44(XP22.2) WILD-TYPE" 
                   TCGA-BR-8080                    TCGA-BR-8081 
"DEL PEAK 44(XP22.2) WILD-TYPE" "DEL PEAK 44(XP22.2) WILD-TYPE" 
                   TCGA-BR-8284                    TCGA-BR-8285 
"DEL PEAK 44(XP22.2) WILD-TYPE" "DEL PEAK 44(XP22.2) WILD-TYPE" 
                   TCGA-BR-8286                    TCGA-BR-8289 
"DEL PEAK 44(XP22.2) WILD-TYPE" "DEL PEAK 44(XP22.2) WILD-TYPE" 
                   TCGA-BR-8291                    TCGA-BR-8295 
"DEL PEAK 44(XP22.2) WILD-TYPE" "DEL PEAK 44(XP22.2) WILD-TYPE" 
                   TCGA-BR-8296                    TCGA-BR-8297 
"DEL PEAK 44(XP22.2) WILD-TYPE" "DEL PEAK 44(XP22.2) WILD-TYPE" 
                   TCGA-CD-5798                    TCGA-CD-5799 
"DEL PEAK 44(XP22.2) WILD-TYPE"   "DEL PEAK 44(XP22.2) MUTATED" 
                   TCGA-CD-5800                    TCGA-CD-5801 
"DEL PEAK 44(XP22.2) WILD-TYPE" "DEL PEAK 44(XP22.2) WILD-TYPE" 
                   TCGA-CD-5802                    TCGA-CD-5803 
  "DEL PEAK 44(XP22.2) MUTATED" "DEL PEAK 44(XP22.2) WILD-TYPE" 
                   TCGA-CG-4300                    TCGA-CG-4301 
"DEL PEAK 44(XP22.2) WILD-TYPE" "DEL PEAK 44(XP22.2) WILD-TYPE" 
                   TCGA-CG-4304                    TCGA-CG-4305 
"DEL PEAK 44(XP22.2) WILD-TYPE" "DEL PEAK 44(XP22.2) WILD-TYPE" 
                   TCGA-CG-4306                    TCGA-CG-4436 
"DEL PEAK 44(XP22.2) WILD-TYPE" "DEL PEAK 44(XP22.2) WILD-TYPE" 
                   TCGA-CG-4437                    TCGA-CG-4438 
"DEL PEAK 44(XP22.2) WILD-TYPE"   "DEL PEAK 44(XP22.2) MUTATED" 
                   TCGA-CG-4440                    TCGA-CG-4441 
"DEL PEAK 44(XP22.2) WILD-TYPE"   "DEL PEAK 44(XP22.2) MUTATED" 
                   TCGA-CG-4443                    TCGA-CG-4444 
"DEL PEAK 44(XP22.2) WILD-TYPE"   "DEL PEAK 44(XP22.2) MUTATED" 
                   TCGA-CG-4449                    TCGA-CG-4455 
  "DEL PEAK 44(XP22.2) MUTATED" "DEL PEAK 44(XP22.2) WILD-TYPE" 
                   TCGA-CG-4460                    TCGA-CG-4462 
  "DEL PEAK 44(XP22.2) MUTATED" "DEL PEAK 44(XP22.2) WILD-TYPE" 
                   TCGA-CG-4465                    TCGA-CG-4466 
"DEL PEAK 44(XP22.2) WILD-TYPE" "DEL PEAK 44(XP22.2) WILD-TYPE" 
                   TCGA-CG-4469                    TCGA-CG-4472 
"DEL PEAK 44(XP22.2) WILD-TYPE" "DEL PEAK 44(XP22.2) WILD-TYPE" 
                   TCGA-CG-4474                    TCGA-CG-4477 
"DEL PEAK 44(XP22.2) WILD-TYPE"   "DEL PEAK 44(XP22.2) MUTATED" 
                   TCGA-CG-5716                    TCGA-CG-5717 
"DEL PEAK 44(XP22.2) WILD-TYPE" "DEL PEAK 44(XP22.2) WILD-TYPE" 
                   TCGA-CG-5718                    TCGA-CG-5719 
  "DEL PEAK 44(XP22.2) MUTATED" "DEL PEAK 44(XP22.2) WILD-TYPE" 
                   TCGA-CG-5720                    TCGA-CG-5721 
"DEL PEAK 44(XP22.2) WILD-TYPE" "DEL PEAK 44(XP22.2) WILD-TYPE" 
                   TCGA-CG-5722                    TCGA-CG-5723 
"DEL PEAK 44(XP22.2) WILD-TYPE" "DEL PEAK 44(XP22.2) WILD-TYPE" 
                   TCGA-CG-5724                    TCGA-CG-5725 
"DEL PEAK 44(XP22.2) WILD-TYPE"   "DEL PEAK 44(XP22.2) MUTATED" 
                   TCGA-CG-5726                    TCGA-CG-5727 
"DEL PEAK 44(XP22.2) WILD-TYPE" "DEL PEAK 44(XP22.2) WILD-TYPE" 
                   TCGA-CG-5728                    TCGA-CG-5730 
"DEL PEAK 44(XP22.2) WILD-TYPE" "DEL PEAK 44(XP22.2) WILD-TYPE" 
                   TCGA-CG-5732                    TCGA-CG-5733 
"DEL PEAK 44(XP22.2) WILD-TYPE" "DEL PEAK 44(XP22.2) WILD-TYPE" 
                   TCGA-CG-5734                    TCGA-D7-5577 
  "DEL PEAK 44(XP22.2) MUTATED" "DEL PEAK 44(XP22.2) WILD-TYPE" 
                   TCGA-D7-5578                    TCGA-D7-5579 
"DEL PEAK 44(XP22.2) WILD-TYPE"   "DEL PEAK 44(XP22.2) MUTATED" 
                   TCGA-D7-6518                    TCGA-D7-6519 
"DEL PEAK 44(XP22.2) WILD-TYPE" "DEL PEAK 44(XP22.2) WILD-TYPE" 
                   TCGA-D7-6520                    TCGA-D7-6521 
"DEL PEAK 44(XP22.2) WILD-TYPE" "DEL PEAK 44(XP22.2) WILD-TYPE" 
                   TCGA-D7-6522                    TCGA-D7-6524 
"DEL PEAK 44(XP22.2) WILD-TYPE" "DEL PEAK 44(XP22.2) WILD-TYPE" 
                   TCGA-D7-6525                    TCGA-D7-6526 
"DEL PEAK 44(XP22.2) WILD-TYPE"   "DEL PEAK 44(XP22.2) MUTATED" 
                   TCGA-D7-6527                    TCGA-D7-6528 
  "DEL PEAK 44(XP22.2) MUTATED"   "DEL PEAK 44(XP22.2) MUTATED" 
                   TCGA-D7-6815                    TCGA-D7-6817 
  "DEL PEAK 44(XP22.2) MUTATED"   "DEL PEAK 44(XP22.2) MUTATED" 
                   TCGA-D7-6818                    TCGA-D7-6820 
"DEL PEAK 44(XP22.2) WILD-TYPE" "DEL PEAK 44(XP22.2) WILD-TYPE" 
                   TCGA-D7-6822                    TCGA-EQ-5647 
  "DEL PEAK 44(XP22.2) MUTATED"   "DEL PEAK 44(XP22.2) MUTATED" 
                   TCGA-EQ-8122                    TCGA-F1-6177 
  "DEL PEAK 44(XP22.2) MUTATED" "DEL PEAK 44(XP22.2) WILD-TYPE" 
                   TCGA-F1-6874                    TCGA-F1-6875 
"DEL PEAK 44(XP22.2) WILD-TYPE" "DEL PEAK 44(XP22.2) WILD-TYPE" 
                   TCGA-FP-7735                    TCGA-FP-7829 
"DEL PEAK 44(XP22.2) WILD-TYPE" "DEL PEAK 44(XP22.2) WILD-TYPE" 
                   TCGA-FP-7916                    TCGA-FP-7998 
"DEL PEAK 44(XP22.2) WILD-TYPE" "DEL PEAK 44(XP22.2) WILD-TYPE" 
                   TCGA-HJ-7597                    TCGA-IN-7806 
"DEL PEAK 44(XP22.2) WILD-TYPE"   "DEL PEAK 44(XP22.2) MUTATED" 
                   TCGA-IN-7808                    TCGA-IP-7968 
  "DEL PEAK 44(XP22.2) MUTATED" "DEL PEAK 44(XP22.2) WILD-TYPE" 
                   TCGA-B7-5816                    TCGA-B7-5818 
"DEL PEAK 44(XP22.2) WILD-TYPE" "DEL PEAK 44(XP22.2) WILD-TYPE" 
                   TCGA-BR-6452                    TCGA-BR-6455 
"DEL PEAK 44(XP22.2) WILD-TYPE" "DEL PEAK 44(XP22.2) WILD-TYPE" 
                   TCGA-BR-6457                    TCGA-BR-6458 
"DEL PEAK 44(XP22.2) WILD-TYPE"   "DEL PEAK 44(XP22.2) MUTATED" 
                   TCGA-BR-6563                    TCGA-BR-6564 
"DEL PEAK 44(XP22.2) WILD-TYPE" "DEL PEAK 44(XP22.2) WILD-TYPE" 
                   TCGA-BR-6565                    TCGA-BR-6566 
"DEL PEAK 44(XP22.2) WILD-TYPE" "DEL PEAK 44(XP22.2) WILD-TYPE" 
                   TCGA-BR-6705                    TCGA-BR-6706 
"DEL PEAK 44(XP22.2) WILD-TYPE" "DEL PEAK 44(XP22.2) WILD-TYPE" 
                   TCGA-BR-6707                    TCGA-BR-6709 
"DEL PEAK 44(XP22.2) WILD-TYPE" "DEL PEAK 44(XP22.2) WILD-TYPE" 
                   TCGA-BR-6710                    TCGA-BR-6801 
"DEL PEAK 44(XP22.2) WILD-TYPE" "DEL PEAK 44(XP22.2) WILD-TYPE" 
                   TCGA-BR-6802                    TCGA-BR-6803 
"DEL PEAK 44(XP22.2) WILD-TYPE" "DEL PEAK 44(XP22.2) WILD-TYPE" 
                   TCGA-BR-6852                    TCGA-BR-7196 
"DEL PEAK 44(XP22.2) WILD-TYPE" "DEL PEAK 44(XP22.2) WILD-TYPE" 
                   TCGA-BR-7197                    TCGA-BR-7703 
"DEL PEAK 44(XP22.2) WILD-TYPE" "DEL PEAK 44(XP22.2) WILD-TYPE" 
                   TCGA-BR-7704                    TCGA-BR-7707 
"DEL PEAK 44(XP22.2) WILD-TYPE" "DEL PEAK 44(XP22.2) WILD-TYPE" 
                   TCGA-BR-7715                    TCGA-BR-7716 
"DEL PEAK 44(XP22.2) WILD-TYPE"   "DEL PEAK 44(XP22.2) MUTATED" 
                   TCGA-BR-7717                    TCGA-BR-7722 
"DEL PEAK 44(XP22.2) WILD-TYPE" "DEL PEAK 44(XP22.2) WILD-TYPE" 
                   TCGA-BR-7723                    TCGA-BR-7851 
"DEL PEAK 44(XP22.2) WILD-TYPE" "DEL PEAK 44(XP22.2) WILD-TYPE" 
                   TCGA-BR-7901                    TCGA-BR-7957 
"DEL PEAK 44(XP22.2) WILD-TYPE" "DEL PEAK 44(XP22.2) WILD-TYPE" 
                   TCGA-BR-7958                    TCGA-BR-7959 
"DEL PEAK 44(XP22.2) WILD-TYPE" "DEL PEAK 44(XP22.2) WILD-TYPE" 
                   TCGA-BR-8059                    TCGA-BR-8060 
"DEL PEAK 44(XP22.2) WILD-TYPE" "DEL PEAK 44(XP22.2) WILD-TYPE" 
                   TCGA-BR-8077                    TCGA-BR-8078 
"DEL PEAK 44(XP22.2) WILD-TYPE" "DEL PEAK 44(XP22.2) WILD-TYPE" 
                   TCGA-BR-8080                    TCGA-BR-8081 
"DEL PEAK 44(XP22.2) WILD-TYPE" "DEL PEAK 44(XP22.2) WILD-TYPE" 
                   TCGA-BR-8284                    TCGA-BR-8285 
"DEL PEAK 44(XP22.2) WILD-TYPE" "DEL PEAK 44(XP22.2) WILD-TYPE" 
                   TCGA-BR-8286                    TCGA-BR-8289 
"DEL PEAK 44(XP22.2) WILD-TYPE" "DEL PEAK 44(XP22.2) WILD-TYPE" 
                   TCGA-BR-8291                    TCGA-BR-8295 
"DEL PEAK 44(XP22.2) WILD-TYPE" "DEL PEAK 44(XP22.2) WILD-TYPE" 
                   TCGA-BR-8296                    TCGA-BR-8297 
"DEL PEAK 44(XP22.2) WILD-TYPE" "DEL PEAK 44(XP22.2) WILD-TYPE" 
                   TCGA-CD-5798                    TCGA-CD-5799 
"DEL PEAK 44(XP22.2) WILD-TYPE"   "DEL PEAK 44(XP22.2) MUTATED" 
                   TCGA-CD-5800                    TCGA-CD-5801 
"DEL PEAK 44(XP22.2) WILD-TYPE" "DEL PEAK 44(XP22.2) WILD-TYPE" 
                   TCGA-CD-5802                    TCGA-CD-5803 
  "DEL PEAK 44(XP22.2) MUTATED" "DEL PEAK 44(XP22.2) WILD-TYPE" 
                   TCGA-CG-4300                    TCGA-CG-4301 
"DEL PEAK 44(XP22.2) WILD-TYPE" "DEL PEAK 44(XP22.2) WILD-TYPE" 
                   TCGA-CG-4304                    TCGA-CG-4305 
"DEL PEAK 44(XP22.2) WILD-TYPE" "DEL PEAK 44(XP22.2) WILD-TYPE" 
                   TCGA-CG-4306                    TCGA-CG-4436 
"DEL PEAK 44(XP22.2) WILD-TYPE" "DEL PEAK 44(XP22.2) WILD-TYPE" 
                   TCGA-CG-4437                    TCGA-CG-4438 
"DEL PEAK 44(XP22.2) WILD-TYPE"   "DEL PEAK 44(XP22.2) MUTATED" 
                   TCGA-CG-4440                    TCGA-CG-4441 
"DEL PEAK 44(XP22.2) WILD-TYPE"   "DEL PEAK 44(XP22.2) MUTATED" 
                   TCGA-CG-4443                    TCGA-CG-4444 
"DEL PEAK 44(XP22.2) WILD-TYPE"   "DEL PEAK 44(XP22.2) MUTATED" 
                   TCGA-CG-4449                    TCGA-CG-4455 
  "DEL PEAK 44(XP22.2) MUTATED" "DEL PEAK 44(XP22.2) WILD-TYPE" 
                   TCGA-CG-4460                    TCGA-CG-4462 
  "DEL PEAK 44(XP22.2) MUTATED" "DEL PEAK 44(XP22.2) WILD-TYPE" 
                   TCGA-CG-4465                    TCGA-CG-4466 
"DEL PEAK 44(XP22.2) WILD-TYPE" "DEL PEAK 44(XP22.2) WILD-TYPE" 
                   TCGA-CG-4469                    TCGA-CG-4472 
"DEL PEAK 44(XP22.2) WILD-TYPE" "DEL PEAK 44(XP22.2) WILD-TYPE" 
                   TCGA-CG-4474                    TCGA-CG-4477 
"DEL PEAK 44(XP22.2) WILD-TYPE"   "DEL PEAK 44(XP22.2) MUTATED" 
                   TCGA-CG-5716                    TCGA-CG-5717 
"DEL PEAK 44(XP22.2) WILD-TYPE" "DEL PEAK 44(XP22.2) WILD-TYPE" 
                   TCGA-CG-5718                    TCGA-CG-5719 
  "DEL PEAK 44(XP22.2) MUTATED" "DEL PEAK 44(XP22.2) WILD-TYPE" 
                   TCGA-CG-5720                    TCGA-CG-5721 
"DEL PEAK 44(XP22.2) WILD-TYPE" "DEL PEAK 44(XP22.2) WILD-TYPE" 
                   TCGA-CG-5722                    TCGA-CG-5723 
"DEL PEAK 44(XP22.2) WILD-TYPE" "DEL PEAK 44(XP22.2) WILD-TYPE" 
                   TCGA-CG-5724                    TCGA-CG-5725 
"DEL PEAK 44(XP22.2) WILD-TYPE"   "DEL PEAK 44(XP22.2) MUTATED" 
                   TCGA-CG-5726                    TCGA-CG-5727 
"DEL PEAK 44(XP22.2) WILD-TYPE" "DEL PEAK 44(XP22.2) WILD-TYPE" 
                   TCGA-CG-5728                    TCGA-CG-5730 
"DEL PEAK 44(XP22.2) WILD-TYPE" "DEL PEAK 44(XP22.2) WILD-TYPE" 
                   TCGA-CG-5732                    TCGA-CG-5733 
"DEL PEAK 44(XP22.2) WILD-TYPE" "DEL PEAK 44(XP22.2) WILD-TYPE" 
                   TCGA-CG-5734                    TCGA-D7-5577 
  "DEL PEAK 44(XP22.2) MUTATED" "DEL PEAK 44(XP22.2) WILD-TYPE" 
                   TCGA-D7-5578                    TCGA-D7-5579 
"DEL PEAK 44(XP22.2) WILD-TYPE"   "DEL PEAK 44(XP22.2) MUTATED" 
                   TCGA-D7-6518                    TCGA-D7-6519 
"DEL PEAK 44(XP22.2) WILD-TYPE" "DEL PEAK 44(XP22.2) WILD-TYPE" 
                   TCGA-D7-6520                    TCGA-D7-6521 
"DEL PEAK 44(XP22.2) WILD-TYPE" "DEL PEAK 44(XP22.2) WILD-TYPE" 
                   TCGA-D7-6522                    TCGA-D7-6524 
"DEL PEAK 44(XP22.2) WILD-TYPE" "DEL PEAK 44(XP22.2) WILD-TYPE" 
                   TCGA-D7-6525                    TCGA-D7-6526 
"DEL PEAK 44(XP22.2) WILD-TYPE"   "DEL PEAK 44(XP22.2) MUTATED" 
                   TCGA-D7-6527                    TCGA-D7-6528 
  "DEL PEAK 44(XP22.2) MUTATED"   "DEL PEAK 44(XP22.2) MUTATED" 
                   TCGA-D7-6815                    TCGA-D7-6817 
  "DEL PEAK 44(XP22.2) MUTATED"   "DEL PEAK 44(XP22.2) MUTATED" 
                   TCGA-D7-6818                    TCGA-D7-6820 
"DEL PEAK 44(XP22.2) WILD-TYPE" "DEL PEAK 44(XP22.2) WILD-TYPE" 
                   TCGA-D7-6822                    TCGA-EQ-5647 
  "DEL PEAK 44(XP22.2) MUTATED"   "DEL PEAK 44(XP22.2) MUTATED" 
                   TCGA-EQ-8122                    TCGA-F1-6177 
  "DEL PEAK 44(XP22.2) MUTATED" "DEL PEAK 44(XP22.2) WILD-TYPE" 
                   TCGA-F1-6874                    TCGA-F1-6875 
"DEL PEAK 44(XP22.2) WILD-TYPE" "DEL PEAK 44(XP22.2) WILD-TYPE" 
                   TCGA-FP-7735                    TCGA-FP-7829 
"DEL PEAK 44(XP22.2) WILD-TYPE" "DEL PEAK 44(XP22.2) WILD-TYPE" 
                   TCGA-FP-7916                    TCGA-FP-7998 
"DEL PEAK 44(XP22.2) WILD-TYPE" "DEL PEAK 44(XP22.2) WILD-TYPE" 
                   TCGA-HJ-7597                    TCGA-IN-7806 
"DEL PEAK 44(XP22.2) WILD-TYPE"   "DEL PEAK 44(XP22.2) MUTATED" 
                   TCGA-IN-7808                    TCGA-IP-7968 
  "DEL PEAK 44(XP22.2) MUTATED" "DEL PEAK 44(XP22.2) WILD-TYPE" 
                   TCGA-B7-5816                    TCGA-B7-5818 
"DEL PEAK 44(XP22.2) WILD-TYPE" "DEL PEAK 44(XP22.2) WILD-TYPE" 
                   TCGA-BR-6452                    TCGA-BR-6455 
"DEL PEAK 44(XP22.2) WILD-TYPE" "DEL PEAK 44(XP22.2) WILD-TYPE" 
                   TCGA-BR-6457                    TCGA-BR-6458 
"DEL PEAK 44(XP22.2) WILD-TYPE"   "DEL PEAK 44(XP22.2) MUTATED" 
                   TCGA-BR-6563                    TCGA-BR-6564 
"DEL PEAK 44(XP22.2) WILD-TYPE" "DEL PEAK 44(XP22.2) WILD-TYPE" 
                   TCGA-BR-6565                    TCGA-BR-6566 
"DEL PEAK 44(XP22.2) WILD-TYPE" "DEL PEAK 44(XP22.2) WILD-TYPE" 
                   TCGA-BR-6705                    TCGA-BR-6706 
"DEL PEAK 44(XP22.2) WILD-TYPE" "DEL PEAK 44(XP22.2) WILD-TYPE" 
                   TCGA-BR-6707                    TCGA-BR-6709 
"DEL PEAK 44(XP22.2) WILD-TYPE" "DEL PEAK 44(XP22.2) WILD-TYPE" 
                   TCGA-BR-6710                    TCGA-BR-6801 
"DEL PEAK 44(XP22.2) WILD-TYPE" "DEL PEAK 44(XP22.2) WILD-TYPE" 
                   TCGA-BR-6802                    TCGA-BR-6803 
"DEL PEAK 44(XP22.2) WILD-TYPE" "DEL PEAK 44(XP22.2) WILD-TYPE" 
                   TCGA-BR-6852                    TCGA-BR-7196 
"DEL PEAK 44(XP22.2) WILD-TYPE" "DEL PEAK 44(XP22.2) WILD-TYPE" 
                   TCGA-BR-7197                    TCGA-BR-7703 
"DEL PEAK 44(XP22.2) WILD-TYPE" "DEL PEAK 44(XP22.2) WILD-TYPE" 
                   TCGA-BR-7704                    TCGA-BR-7707 
"DEL PEAK 44(XP22.2) WILD-TYPE" "DEL PEAK 44(XP22.2) WILD-TYPE" 
                   TCGA-BR-7715                    TCGA-BR-7716 
"DEL PEAK 44(XP22.2) WILD-TYPE"   "DEL PEAK 44(XP22.2) MUTATED" 
                   TCGA-BR-7717                    TCGA-BR-7722 
"DEL PEAK 44(XP22.2) WILD-TYPE" "DEL PEAK 44(XP22.2) WILD-TYPE" 
                   TCGA-BR-7723                    TCGA-BR-7851 
"DEL PEAK 44(XP22.2) WILD-TYPE" "DEL PEAK 44(XP22.2) WILD-TYPE" 
                   TCGA-BR-7901                    TCGA-BR-7957 
"DEL PEAK 44(XP22.2) WILD-TYPE" "DEL PEAK 44(XP22.2) WILD-TYPE" 
                   TCGA-BR-7958                    TCGA-BR-7959 
"DEL PEAK 44(XP22.2) WILD-TYPE" "DEL PEAK 44(XP22.2) WILD-TYPE" 
                   TCGA-BR-8059                    TCGA-BR-8060 
"DEL PEAK 44(XP22.2) WILD-TYPE" "DEL PEAK 44(XP22.2) WILD-TYPE" 
                   TCGA-BR-8077                    TCGA-BR-8078 
"DEL PEAK 44(XP22.2) WILD-TYPE" "DEL PEAK 44(XP22.2) WILD-TYPE" 
                   TCGA-BR-8080                    TCGA-BR-8081 
"DEL PEAK 44(XP22.2) WILD-TYPE" "DEL PEAK 44(XP22.2) WILD-TYPE" 
                   TCGA-BR-8284                    TCGA-BR-8285 
"DEL PEAK 44(XP22.2) WILD-TYPE" "DEL PEAK 44(XP22.2) WILD-TYPE" 
                   TCGA-BR-8286                    TCGA-BR-8289 
"DEL PEAK 44(XP22.2) WILD-TYPE" "DEL PEAK 44(XP22.2) WILD-TYPE" 
                   TCGA-BR-8291                    TCGA-BR-8295 
"DEL PEAK 44(XP22.2) WILD-TYPE" "DEL PEAK 44(XP22.2) WILD-TYPE" 
                   TCGA-BR-8296                    TCGA-BR-8297 
"DEL PEAK 44(XP22.2) WILD-TYPE" "DEL PEAK 44(XP22.2) WILD-TYPE" 
                   TCGA-CD-5798                    TCGA-CD-5799 
"DEL PEAK 44(XP22.2) WILD-TYPE"   "DEL PEAK 44(XP22.2) MUTATED" 
                   TCGA-CD-5800                    TCGA-CD-5801 
"DEL PEAK 44(XP22.2) WILD-TYPE" "DEL PEAK 44(XP22.2) WILD-TYPE" 
                   TCGA-CD-5802                    TCGA-CD-5803 
  "DEL PEAK 44(XP22.2) MUTATED" "DEL PEAK 44(XP22.2) WILD-TYPE" 
                   TCGA-CG-4300                    TCGA-CG-4301 
"DEL PEAK 44(XP22.2) WILD-TYPE" "DEL PEAK 44(XP22.2) WILD-TYPE" 
                   TCGA-CG-4304                    TCGA-CG-4305 
"DEL PEAK 44(XP22.2) WILD-TYPE" "DEL PEAK 44(XP22.2) WILD-TYPE" 
                   TCGA-CG-4306                    TCGA-CG-4436 
"DEL PEAK 44(XP22.2) WILD-TYPE" "DEL PEAK 44(XP22.2) WILD-TYPE" 
                   TCGA-CG-4437                    TCGA-CG-4438 
"DEL PEAK 44(XP22.2) WILD-TYPE"   "DEL PEAK 44(XP22.2) MUTATED" 
                   TCGA-CG-4440                    TCGA-CG-4441 
"DEL PEAK 44(XP22.2) WILD-TYPE"   "DEL PEAK 44(XP22.2) MUTATED" 
                   TCGA-CG-4443                    TCGA-CG-4444 
"DEL PEAK 44(XP22.2) WILD-TYPE"   "DEL PEAK 44(XP22.2) MUTATED" 
                   TCGA-CG-4449                    TCGA-CG-4455 
  "DEL PEAK 44(XP22.2) MUTATED" "DEL PEAK 44(XP22.2) WILD-TYPE" 
                   TCGA-CG-4460                    TCGA-CG-4462 
  "DEL PEAK 44(XP22.2) MUTATED" "DEL PEAK 44(XP22.2) WILD-TYPE" 
                   TCGA-CG-4465                    TCGA-CG-4466 
"DEL PEAK 44(XP22.2) WILD-TYPE" "DEL PEAK 44(XP22.2) WILD-TYPE" 
                   TCGA-CG-4469                    TCGA-CG-4472 
"DEL PEAK 44(XP22.2) WILD-TYPE" "DEL PEAK 44(XP22.2) WILD-TYPE" 
                   TCGA-CG-4474                    TCGA-CG-4477 
"DEL PEAK 44(XP22.2) WILD-TYPE"   "DEL PEAK 44(XP22.2) MUTATED" 
                   TCGA-CG-5716                    TCGA-CG-5717 
"DEL PEAK 44(XP22.2) WILD-TYPE" "DEL PEAK 44(XP22.2) WILD-TYPE" 
                   TCGA-CG-5718                    TCGA-CG-5719 
  "DEL PEAK 44(XP22.2) MUTATED" "DEL PEAK 44(XP22.2) WILD-TYPE" 
                   TCGA-CG-5720                    TCGA-CG-5721 
"DEL PEAK 44(XP22.2) WILD-TYPE" "DEL PEAK 44(XP22.2) WILD-TYPE" 
                   TCGA-CG-5722                    TCGA-CG-5723 
"DEL PEAK 44(XP22.2) WILD-TYPE" "DEL PEAK 44(XP22.2) WILD-TYPE" 
                   TCGA-CG-5724                    TCGA-CG-5725 
"DEL PEAK 44(XP22.2) WILD-TYPE"   "DEL PEAK 44(XP22.2) MUTATED" 
                   TCGA-CG-5726                    TCGA-CG-5727 
"DEL PEAK 44(XP22.2) WILD-TYPE" "DEL PEAK 44(XP22.2) WILD-TYPE" 
                   TCGA-CG-5728                    TCGA-CG-5730 
"DEL PEAK 44(XP22.2) WILD-TYPE" "DEL PEAK 44(XP22.2) WILD-TYPE" 
                   TCGA-CG-5732                    TCGA-CG-5733 
"DEL PEAK 44(XP22.2) WILD-TYPE" "DEL PEAK 44(XP22.2) WILD-TYPE" 
                   TCGA-CG-5734                    TCGA-D7-5577 
  "DEL PEAK 44(XP22.2) MUTATED" "DEL PEAK 44(XP22.2) WILD-TYPE" 
                   TCGA-D7-5578                    TCGA-D7-5579 
"DEL PEAK 44(XP22.2) WILD-TYPE"   "DEL PEAK 44(XP22.2) MUTATED" 
                   TCGA-D7-6518                    TCGA-D7-6519 
"DEL PEAK 44(XP22.2) WILD-TYPE" "DEL PEAK 44(XP22.2) WILD-TYPE" 
                   TCGA-D7-6520                    TCGA-D7-6521 
"DEL PEAK 44(XP22.2) WILD-TYPE" "DEL PEAK 44(XP22.2) WILD-TYPE" 
                   TCGA-D7-6522                    TCGA-D7-6524 
"DEL PEAK 44(XP22.2) WILD-TYPE" "DEL PEAK 44(XP22.2) WILD-TYPE" 
                   TCGA-D7-6525                    TCGA-D7-6526 
"DEL PEAK 44(XP22.2) WILD-TYPE"   "DEL PEAK 44(XP22.2) MUTATED" 
                   TCGA-D7-6527                    TCGA-D7-6528 
  "DEL PEAK 44(XP22.2) MUTATED"   "DEL PEAK 44(XP22.2) MUTATED" 
                   TCGA-D7-6815                    TCGA-D7-6817 
  "DEL PEAK 44(XP22.2) MUTATED"   "DEL PEAK 44(XP22.2) MUTATED" 
                   TCGA-D7-6818                    TCGA-D7-6820 
"DEL PEAK 44(XP22.2) WILD-TYPE" "DEL PEAK 44(XP22.2) WILD-TYPE" 
                   TCGA-D7-6822                    TCGA-EQ-5647 
  "DEL PEAK 44(XP22.2) MUTATED"   "DEL PEAK 44(XP22.2) MUTATED" 
                   TCGA-EQ-8122                    TCGA-F1-6177 
  "DEL PEAK 44(XP22.2) MUTATED" "DEL PEAK 44(XP22.2) WILD-TYPE" 
                   TCGA-F1-6874                    TCGA-F1-6875 
"DEL PEAK 44(XP22.2) WILD-TYPE" "DEL PEAK 44(XP22.2) WILD-TYPE" 
                   TCGA-FP-7735                    TCGA-FP-7829 
"DEL PEAK 44(XP22.2) WILD-TYPE" "DEL PEAK 44(XP22.2) WILD-TYPE" 
                   TCGA-FP-7916                    TCGA-FP-7998 
"DEL PEAK 44(XP22.2) WILD-TYPE" "DEL PEAK 44(XP22.2) WILD-TYPE" 
                   TCGA-HJ-7597                    TCGA-IN-7806 
"DEL PEAK 44(XP22.2) WILD-TYPE"   "DEL PEAK 44(XP22.2) MUTATED" 
                   TCGA-IN-7808                    TCGA-IP-7968 
  "DEL PEAK 44(XP22.2) MUTATED" "DEL PEAK 44(XP22.2) WILD-TYPE" 
[1] "hr=" "1.6"
D70V2, continuous
D70V3, binary
[1] "tbl2"
                               cls
clus                            [,1] [,2]
  DEL PEAK 44(XP22.2) MUTATED     10   17
  DEL PEAK 44(XP22.2) WILD-TYPE   55   79
        clus
vv       DEL PEAK 44(XP22.2) MUTATED DEL PEAK 44(XP22.2) WILD-TYPE
  FEMALE                          10                            55
  MALE                            17                            79
D70V4, multiclass
D70V5, multiclass
    clus
vv   DEL PEAK 44(XP22.2) MUTATED DEL PEAK 44(XP22.2) WILD-TYPE
  T1                           0                             6
  T2                          13                            40
  T3                           9                            50
  T4                           4                            29
D70V6, multiclass
    clus
vv   DEL PEAK 44(XP22.2) MUTATED DEL PEAK 44(XP22.2) WILD-TYPE
  N0                           6                            44
  N1                          11                            46
  N2                           6                            18
  N3                           3                            16
D70V7, multiclass
    clus
vv   DEL PEAK 44(XP22.2) MUTATED DEL PEAK 44(XP22.2) WILD-TYPE
  M0                          23                           109
  M1                           3                            15
  MX                           1                            10
D70V8, multiclass
     clus
vv    DEL PEAK 44(XP22.2) MUTATED DEL PEAK 44(XP22.2) WILD-TYPE
  I                             4                            21
  II                            9                            34
  III                           8                            40
  IV                            4                            25
D70V9, binary
[1] "tbl2"
                               cls
clus                            [,1] [,2]
  DEL PEAK 44(XP22.2) MUTATED     26    1
  DEL PEAK 44(XP22.2) WILD-TYPE  130    4
     clus
vv    DEL PEAK 44(XP22.2) MUTATED DEL PEAK 44(XP22.2) WILD-TYPE
  NO                            1                             4
  YES                          26                           130

Clustering(71) Variable = Del Peak 45(Xp21.1) mutation analysis
D71V1, survival
                   TCGA-B7-5816                    TCGA-B7-5818 
"DEL PEAK 45(XP21.1) WILD-TYPE" "DEL PEAK 45(XP21.1) WILD-TYPE" 
                   TCGA-BR-6452                    TCGA-BR-6455 
"DEL PEAK 45(XP21.1) WILD-TYPE" "DEL PEAK 45(XP21.1) WILD-TYPE" 
                   TCGA-BR-6457                    TCGA-BR-6458 
"DEL PEAK 45(XP21.1) WILD-TYPE"   "DEL PEAK 45(XP21.1) MUTATED" 
                   TCGA-BR-6563                    TCGA-BR-6564 
"DEL PEAK 45(XP21.1) WILD-TYPE" "DEL PEAK 45(XP21.1) WILD-TYPE" 
                   TCGA-BR-6565                    TCGA-BR-6566 
"DEL PEAK 45(XP21.1) WILD-TYPE" "DEL PEAK 45(XP21.1) WILD-TYPE" 
                   TCGA-BR-6705                    TCGA-BR-6706 
"DEL PEAK 45(XP21.1) WILD-TYPE" "DEL PEAK 45(XP21.1) WILD-TYPE" 
                   TCGA-BR-6707                    TCGA-BR-6709 
"DEL PEAK 45(XP21.1) WILD-TYPE" "DEL PEAK 45(XP21.1) WILD-TYPE" 
                   TCGA-BR-6710                    TCGA-BR-6801 
"DEL PEAK 45(XP21.1) WILD-TYPE" "DEL PEAK 45(XP21.1) WILD-TYPE" 
                   TCGA-BR-6802                    TCGA-BR-6803 
"DEL PEAK 45(XP21.1) WILD-TYPE" "DEL PEAK 45(XP21.1) WILD-TYPE" 
                   TCGA-BR-6852                    TCGA-BR-7196 
"DEL PEAK 45(XP21.1) WILD-TYPE" "DEL PEAK 45(XP21.1) WILD-TYPE" 
                   TCGA-BR-7197                    TCGA-BR-7703 
"DEL PEAK 45(XP21.1) WILD-TYPE" "DEL PEAK 45(XP21.1) WILD-TYPE" 
                   TCGA-BR-7704                    TCGA-BR-7707 
"DEL PEAK 45(XP21.1) WILD-TYPE" "DEL PEAK 45(XP21.1) WILD-TYPE" 
                   TCGA-BR-7715                    TCGA-BR-7716 
"DEL PEAK 45(XP21.1) WILD-TYPE" "DEL PEAK 45(XP21.1) WILD-TYPE" 
                   TCGA-BR-7717                    TCGA-BR-7722 
"DEL PEAK 45(XP21.1) WILD-TYPE" "DEL PEAK 45(XP21.1) WILD-TYPE" 
                   TCGA-BR-7723                    TCGA-BR-7851 
"DEL PEAK 45(XP21.1) WILD-TYPE" "DEL PEAK 45(XP21.1) WILD-TYPE" 
                   TCGA-BR-7901                    TCGA-BR-7957 
"DEL PEAK 45(XP21.1) WILD-TYPE" "DEL PEAK 45(XP21.1) WILD-TYPE" 
                   TCGA-BR-7958                    TCGA-BR-7959 
"DEL PEAK 45(XP21.1) WILD-TYPE" "DEL PEAK 45(XP21.1) WILD-TYPE" 
                   TCGA-BR-8059                    TCGA-BR-8060 
"DEL PEAK 45(XP21.1) WILD-TYPE" "DEL PEAK 45(XP21.1) WILD-TYPE" 
                   TCGA-BR-8077                    TCGA-BR-8078 
"DEL PEAK 45(XP21.1) WILD-TYPE" "DEL PEAK 45(XP21.1) WILD-TYPE" 
                   TCGA-BR-8080                    TCGA-BR-8081 
"DEL PEAK 45(XP21.1) WILD-TYPE" "DEL PEAK 45(XP21.1) WILD-TYPE" 
                   TCGA-BR-8284                    TCGA-BR-8285 
"DEL PEAK 45(XP21.1) WILD-TYPE" "DEL PEAK 45(XP21.1) WILD-TYPE" 
                   TCGA-BR-8286                    TCGA-BR-8289 
"DEL PEAK 45(XP21.1) WILD-TYPE" "DEL PEAK 45(XP21.1) WILD-TYPE" 
                   TCGA-BR-8291                    TCGA-BR-8295 
"DEL PEAK 45(XP21.1) WILD-TYPE" "DEL PEAK 45(XP21.1) WILD-TYPE" 
                   TCGA-BR-8296                    TCGA-BR-8297 
"DEL PEAK 45(XP21.1) WILD-TYPE" "DEL PEAK 45(XP21.1) WILD-TYPE" 
                   TCGA-CD-5798                    TCGA-CD-5799 
"DEL PEAK 45(XP21.1) WILD-TYPE" "DEL PEAK 45(XP21.1) WILD-TYPE" 
                   TCGA-CD-5800                    TCGA-CD-5801 
"DEL PEAK 45(XP21.1) WILD-TYPE" "DEL PEAK 45(XP21.1) WILD-TYPE" 
                   TCGA-CD-5802                    TCGA-CD-5803 
  "DEL PEAK 45(XP21.1) MUTATED" "DEL PEAK 45(XP21.1) WILD-TYPE" 
                   TCGA-CG-4300                    TCGA-CG-4301 
"DEL PEAK 45(XP21.1) WILD-TYPE" "DEL PEAK 45(XP21.1) WILD-TYPE" 
                   TCGA-CG-4304                    TCGA-CG-4305 
"DEL PEAK 45(XP21.1) WILD-TYPE" "DEL PEAK 45(XP21.1) WILD-TYPE" 
                   TCGA-CG-4306                    TCGA-CG-4436 
"DEL PEAK 45(XP21.1) WILD-TYPE" "DEL PEAK 45(XP21.1) WILD-TYPE" 
                   TCGA-CG-4437                    TCGA-CG-4438 
  "DEL PEAK 45(XP21.1) MUTATED"   "DEL PEAK 45(XP21.1) MUTATED" 
                   TCGA-CG-4440                    TCGA-CG-4441 
"DEL PEAK 45(XP21.1) WILD-TYPE" "DEL PEAK 45(XP21.1) WILD-TYPE" 
                   TCGA-CG-4443                    TCGA-CG-4444 
  "DEL PEAK 45(XP21.1) MUTATED"   "DEL PEAK 45(XP21.1) MUTATED" 
                   TCGA-CG-4449                    TCGA-CG-4455 
  "DEL PEAK 45(XP21.1) MUTATED" "DEL PEAK 45(XP21.1) WILD-TYPE" 
                   TCGA-CG-4460                    TCGA-CG-4462 
  "DEL PEAK 45(XP21.1) MUTATED" "DEL PEAK 45(XP21.1) WILD-TYPE" 
                   TCGA-CG-4465                    TCGA-CG-4466 
"DEL PEAK 45(XP21.1) WILD-TYPE" "DEL PEAK 45(XP21.1) WILD-TYPE" 
                   TCGA-CG-4469                    TCGA-CG-4472 
  "DEL PEAK 45(XP21.1) MUTATED" "DEL PEAK 45(XP21.1) WILD-TYPE" 
                   TCGA-CG-4474                    TCGA-CG-4477 
"DEL PEAK 45(XP21.1) WILD-TYPE"   "DEL PEAK 45(XP21.1) MUTATED" 
                   TCGA-CG-5716                    TCGA-CG-5717 
"DEL PEAK 45(XP21.1) WILD-TYPE" "DEL PEAK 45(XP21.1) WILD-TYPE" 
                   TCGA-CG-5718                    TCGA-CG-5719 
"DEL PEAK 45(XP21.1) WILD-TYPE" "DEL PEAK 45(XP21.1) WILD-TYPE" 
                   TCGA-CG-5720                    TCGA-CG-5721 
"DEL PEAK 45(XP21.1) WILD-TYPE" "DEL PEAK 45(XP21.1) WILD-TYPE" 
                   TCGA-CG-5722                    TCGA-CG-5723 
"DEL PEAK 45(XP21.1) WILD-TYPE" "DEL PEAK 45(XP21.1) WILD-TYPE" 
                   TCGA-CG-5724                    TCGA-CG-5725 
  "DEL PEAK 45(XP21.1) MUTATED"   "DEL PEAK 45(XP21.1) MUTATED" 
                   TCGA-CG-5726                    TCGA-CG-5727 
"DEL PEAK 45(XP21.1) WILD-TYPE" "DEL PEAK 45(XP21.1) WILD-TYPE" 
                   TCGA-CG-5728                    TCGA-CG-5730 
"DEL PEAK 45(XP21.1) WILD-TYPE" "DEL PEAK 45(XP21.1) WILD-TYPE" 
                   TCGA-CG-5732                    TCGA-CG-5733 
"DEL PEAK 45(XP21.1) WILD-TYPE" "DEL PEAK 45(XP21.1) WILD-TYPE" 
                   TCGA-CG-5734                    TCGA-D7-5577 
  "DEL PEAK 45(XP21.1) MUTATED" "DEL PEAK 45(XP21.1) WILD-TYPE" 
                   TCGA-D7-5578                    TCGA-D7-5579 
"DEL PEAK 45(XP21.1) WILD-TYPE"   "DEL PEAK 45(XP21.1) MUTATED" 
                   TCGA-D7-6518                    TCGA-D7-6519 
  "DEL PEAK 45(XP21.1) MUTATED" "DEL PEAK 45(XP21.1) WILD-TYPE" 
                   TCGA-D7-6520                    TCGA-D7-6521 
"DEL PEAK 45(XP21.1) WILD-TYPE" "DEL PEAK 45(XP21.1) WILD-TYPE" 
                   TCGA-D7-6522                    TCGA-D7-6524 
"DEL PEAK 45(XP21.1) WILD-TYPE" "DEL PEAK 45(XP21.1) WILD-TYPE" 
                   TCGA-D7-6525                    TCGA-D7-6526 
  "DEL PEAK 45(XP21.1) MUTATED" "DEL PEAK 45(XP21.1) WILD-TYPE" 
                   TCGA-D7-6527                    TCGA-D7-6528 
"DEL PEAK 45(XP21.1) WILD-TYPE"   "DEL PEAK 45(XP21.1) MUTATED" 
                   TCGA-D7-6815                    TCGA-D7-6817 
  "DEL PEAK 45(XP21.1) MUTATED"   "DEL PEAK 45(XP21.1) MUTATED" 
                   TCGA-D7-6818                    TCGA-D7-6820 
"DEL PEAK 45(XP21.1) WILD-TYPE" "DEL PEAK 45(XP21.1) WILD-TYPE" 
                   TCGA-D7-6822                    TCGA-EQ-5647 
  "DEL PEAK 45(XP21.1) MUTATED"   "DEL PEAK 45(XP21.1) MUTATED" 
                   TCGA-EQ-8122                    TCGA-F1-6177 
  "DEL PEAK 45(XP21.1) MUTATED" "DEL PEAK 45(XP21.1) WILD-TYPE" 
                   TCGA-F1-6874                    TCGA-F1-6875 
"DEL PEAK 45(XP21.1) WILD-TYPE" "DEL PEAK 45(XP21.1) WILD-TYPE" 
                   TCGA-FP-7735                    TCGA-FP-7829 
"DEL PEAK 45(XP21.1) WILD-TYPE" "DEL PEAK 45(XP21.1) WILD-TYPE" 
                   TCGA-FP-7916                    TCGA-FP-7998 
"DEL PEAK 45(XP21.1) WILD-TYPE" "DEL PEAK 45(XP21.1) WILD-TYPE" 
                   TCGA-HJ-7597                    TCGA-IN-7806 
"DEL PEAK 45(XP21.1) WILD-TYPE"   "DEL PEAK 45(XP21.1) MUTATED" 
                   TCGA-IN-7808                    TCGA-IP-7968 
  "DEL PEAK 45(XP21.1) MUTATED" "DEL PEAK 45(XP21.1) WILD-TYPE" 
                   TCGA-B7-5816                    TCGA-B7-5818 
"DEL PEAK 45(XP21.1) WILD-TYPE" "DEL PEAK 45(XP21.1) WILD-TYPE" 
                   TCGA-BR-6452                    TCGA-BR-6455 
"DEL PEAK 45(XP21.1) WILD-TYPE" "DEL PEAK 45(XP21.1) WILD-TYPE" 
                   TCGA-BR-6457                    TCGA-BR-6458 
"DEL PEAK 45(XP21.1) WILD-TYPE"   "DEL PEAK 45(XP21.1) MUTATED" 
                   TCGA-BR-6563                    TCGA-BR-6564 
"DEL PEAK 45(XP21.1) WILD-TYPE" "DEL PEAK 45(XP21.1) WILD-TYPE" 
                   TCGA-BR-6565                    TCGA-BR-6566 
"DEL PEAK 45(XP21.1) WILD-TYPE" "DEL PEAK 45(XP21.1) WILD-TYPE" 
                   TCGA-BR-6705                    TCGA-BR-6706 
"DEL PEAK 45(XP21.1) WILD-TYPE" "DEL PEAK 45(XP21.1) WILD-TYPE" 
                   TCGA-BR-6707                    TCGA-BR-6709 
"DEL PEAK 45(XP21.1) WILD-TYPE" "DEL PEAK 45(XP21.1) WILD-TYPE" 
                   TCGA-BR-6710                    TCGA-BR-6801 
"DEL PEAK 45(XP21.1) WILD-TYPE" "DEL PEAK 45(XP21.1) WILD-TYPE" 
                   TCGA-BR-6802                    TCGA-BR-6803 
"DEL PEAK 45(XP21.1) WILD-TYPE" "DEL PEAK 45(XP21.1) WILD-TYPE" 
                   TCGA-BR-6852                    TCGA-BR-7196 
"DEL PEAK 45(XP21.1) WILD-TYPE" "DEL PEAK 45(XP21.1) WILD-TYPE" 
                   TCGA-BR-7197                    TCGA-BR-7703 
"DEL PEAK 45(XP21.1) WILD-TYPE" "DEL PEAK 45(XP21.1) WILD-TYPE" 
                   TCGA-BR-7704                    TCGA-BR-7707 
"DEL PEAK 45(XP21.1) WILD-TYPE" "DEL PEAK 45(XP21.1) WILD-TYPE" 
                   TCGA-BR-7715                    TCGA-BR-7716 
"DEL PEAK 45(XP21.1) WILD-TYPE" "DEL PEAK 45(XP21.1) WILD-TYPE" 
                   TCGA-BR-7717                    TCGA-BR-7722 
"DEL PEAK 45(XP21.1) WILD-TYPE" "DEL PEAK 45(XP21.1) WILD-TYPE" 
                   TCGA-BR-7723                    TCGA-BR-7851 
"DEL PEAK 45(XP21.1) WILD-TYPE" "DEL PEAK 45(XP21.1) WILD-TYPE" 
                   TCGA-BR-7901                    TCGA-BR-7957 
"DEL PEAK 45(XP21.1) WILD-TYPE" "DEL PEAK 45(XP21.1) WILD-TYPE" 
                   TCGA-BR-7958                    TCGA-BR-7959 
"DEL PEAK 45(XP21.1) WILD-TYPE" "DEL PEAK 45(XP21.1) WILD-TYPE" 
                   TCGA-BR-8059                    TCGA-BR-8060 
"DEL PEAK 45(XP21.1) WILD-TYPE" "DEL PEAK 45(XP21.1) WILD-TYPE" 
                   TCGA-BR-8077                    TCGA-BR-8078 
"DEL PEAK 45(XP21.1) WILD-TYPE" "DEL PEAK 45(XP21.1) WILD-TYPE" 
                   TCGA-BR-8080                    TCGA-BR-8081 
"DEL PEAK 45(XP21.1) WILD-TYPE" "DEL PEAK 45(XP21.1) WILD-TYPE" 
                   TCGA-BR-8284                    TCGA-BR-8285 
"DEL PEAK 45(XP21.1) WILD-TYPE" "DEL PEAK 45(XP21.1) WILD-TYPE" 
                   TCGA-BR-8286                    TCGA-BR-8289 
"DEL PEAK 45(XP21.1) WILD-TYPE" "DEL PEAK 45(XP21.1) WILD-TYPE" 
                   TCGA-BR-8291                    TCGA-BR-8295 
"DEL PEAK 45(XP21.1) WILD-TYPE" "DEL PEAK 45(XP21.1) WILD-TYPE" 
                   TCGA-BR-8296                    TCGA-BR-8297 
"DEL PEAK 45(XP21.1) WILD-TYPE" "DEL PEAK 45(XP21.1) WILD-TYPE" 
                   TCGA-CD-5798                    TCGA-CD-5799 
"DEL PEAK 45(XP21.1) WILD-TYPE" "DEL PEAK 45(XP21.1) WILD-TYPE" 
                   TCGA-CD-5800                    TCGA-CD-5801 
"DEL PEAK 45(XP21.1) WILD-TYPE" "DEL PEAK 45(XP21.1) WILD-TYPE" 
                   TCGA-CD-5802                    TCGA-CD-5803 
  "DEL PEAK 45(XP21.1) MUTATED" "DEL PEAK 45(XP21.1) WILD-TYPE" 
                   TCGA-CG-4300                    TCGA-CG-4301 
"DEL PEAK 45(XP21.1) WILD-TYPE" "DEL PEAK 45(XP21.1) WILD-TYPE" 
                   TCGA-CG-4304                    TCGA-CG-4305 
"DEL PEAK 45(XP21.1) WILD-TYPE" "DEL PEAK 45(XP21.1) WILD-TYPE" 
                   TCGA-CG-4306                    TCGA-CG-4436 
"DEL PEAK 45(XP21.1) WILD-TYPE" "DEL PEAK 45(XP21.1) WILD-TYPE" 
                   TCGA-CG-4437                    TCGA-CG-4438 
  "DEL PEAK 45(XP21.1) MUTATED"   "DEL PEAK 45(XP21.1) MUTATED" 
                   TCGA-CG-4440                    TCGA-CG-4441 
"DEL PEAK 45(XP21.1) WILD-TYPE" "DEL PEAK 45(XP21.1) WILD-TYPE" 
                   TCGA-CG-4443                    TCGA-CG-4444 
  "DEL PEAK 45(XP21.1) MUTATED"   "DEL PEAK 45(XP21.1) MUTATED" 
                   TCGA-CG-4449                    TCGA-CG-4455 
  "DEL PEAK 45(XP21.1) MUTATED" "DEL PEAK 45(XP21.1) WILD-TYPE" 
                   TCGA-CG-4460                    TCGA-CG-4462 
  "DEL PEAK 45(XP21.1) MUTATED" "DEL PEAK 45(XP21.1) WILD-TYPE" 
                   TCGA-CG-4465                    TCGA-CG-4466 
"DEL PEAK 45(XP21.1) WILD-TYPE" "DEL PEAK 45(XP21.1) WILD-TYPE" 
                   TCGA-CG-4469                    TCGA-CG-4472 
  "DEL PEAK 45(XP21.1) MUTATED" "DEL PEAK 45(XP21.1) WILD-TYPE" 
                   TCGA-CG-4474                    TCGA-CG-4477 
"DEL PEAK 45(XP21.1) WILD-TYPE"   "DEL PEAK 45(XP21.1) MUTATED" 
                   TCGA-CG-5716                    TCGA-CG-5717 
"DEL PEAK 45(XP21.1) WILD-TYPE" "DEL PEAK 45(XP21.1) WILD-TYPE" 
                   TCGA-CG-5718                    TCGA-CG-5719 
"DEL PEAK 45(XP21.1) WILD-TYPE" "DEL PEAK 45(XP21.1) WILD-TYPE" 
                   TCGA-CG-5720                    TCGA-CG-5721 
"DEL PEAK 45(XP21.1) WILD-TYPE" "DEL PEAK 45(XP21.1) WILD-TYPE" 
                   TCGA-CG-5722                    TCGA-CG-5723 
"DEL PEAK 45(XP21.1) WILD-TYPE" "DEL PEAK 45(XP21.1) WILD-TYPE" 
                   TCGA-CG-5724                    TCGA-CG-5725 
  "DEL PEAK 45(XP21.1) MUTATED"   "DEL PEAK 45(XP21.1) MUTATED" 
                   TCGA-CG-5726                    TCGA-CG-5727 
"DEL PEAK 45(XP21.1) WILD-TYPE" "DEL PEAK 45(XP21.1) WILD-TYPE" 
                   TCGA-CG-5728                    TCGA-CG-5730 
"DEL PEAK 45(XP21.1) WILD-TYPE" "DEL PEAK 45(XP21.1) WILD-TYPE" 
                   TCGA-CG-5732                    TCGA-CG-5733 
"DEL PEAK 45(XP21.1) WILD-TYPE" "DEL PEAK 45(XP21.1) WILD-TYPE" 
                   TCGA-CG-5734                    TCGA-D7-5577 
  "DEL PEAK 45(XP21.1) MUTATED" "DEL PEAK 45(XP21.1) WILD-TYPE" 
                   TCGA-D7-5578                    TCGA-D7-5579 
"DEL PEAK 45(XP21.1) WILD-TYPE"   "DEL PEAK 45(XP21.1) MUTATED" 
                   TCGA-D7-6518                    TCGA-D7-6519 
  "DEL PEAK 45(XP21.1) MUTATED" "DEL PEAK 45(XP21.1) WILD-TYPE" 
                   TCGA-D7-6520                    TCGA-D7-6521 
"DEL PEAK 45(XP21.1) WILD-TYPE" "DEL PEAK 45(XP21.1) WILD-TYPE" 
                   TCGA-D7-6522                    TCGA-D7-6524 
"DEL PEAK 45(XP21.1) WILD-TYPE" "DEL PEAK 45(XP21.1) WILD-TYPE" 
                   TCGA-D7-6525                    TCGA-D7-6526 
  "DEL PEAK 45(XP21.1) MUTATED" "DEL PEAK 45(XP21.1) WILD-TYPE" 
                   TCGA-D7-6527                    TCGA-D7-6528 
"DEL PEAK 45(XP21.1) WILD-TYPE"   "DEL PEAK 45(XP21.1) MUTATED" 
                   TCGA-D7-6815                    TCGA-D7-6817 
  "DEL PEAK 45(XP21.1) MUTATED"   "DEL PEAK 45(XP21.1) MUTATED" 
                   TCGA-D7-6818                    TCGA-D7-6820 
"DEL PEAK 45(XP21.1) WILD-TYPE" "DEL PEAK 45(XP21.1) WILD-TYPE" 
                   TCGA-D7-6822                    TCGA-EQ-5647 
  "DEL PEAK 45(XP21.1) MUTATED"   "DEL PEAK 45(XP21.1) MUTATED" 
                   TCGA-EQ-8122                    TCGA-F1-6177 
  "DEL PEAK 45(XP21.1) MUTATED" "DEL PEAK 45(XP21.1) WILD-TYPE" 
                   TCGA-F1-6874                    TCGA-F1-6875 
"DEL PEAK 45(XP21.1) WILD-TYPE" "DEL PEAK 45(XP21.1) WILD-TYPE" 
                   TCGA-FP-7735                    TCGA-FP-7829 
"DEL PEAK 45(XP21.1) WILD-TYPE" "DEL PEAK 45(XP21.1) WILD-TYPE" 
                   TCGA-FP-7916                    TCGA-FP-7998 
"DEL PEAK 45(XP21.1) WILD-TYPE" "DEL PEAK 45(XP21.1) WILD-TYPE" 
                   TCGA-HJ-7597                    TCGA-IN-7806 
"DEL PEAK 45(XP21.1) WILD-TYPE"   "DEL PEAK 45(XP21.1) MUTATED" 
                   TCGA-IN-7808                    TCGA-IP-7968 
  "DEL PEAK 45(XP21.1) MUTATED" "DEL PEAK 45(XP21.1) WILD-TYPE" 
                   TCGA-B7-5816                    TCGA-B7-5818 
"DEL PEAK 45(XP21.1) WILD-TYPE" "DEL PEAK 45(XP21.1) WILD-TYPE" 
                   TCGA-BR-6452                    TCGA-BR-6455 
"DEL PEAK 45(XP21.1) WILD-TYPE" "DEL PEAK 45(XP21.1) WILD-TYPE" 
                   TCGA-BR-6457                    TCGA-BR-6458 
"DEL PEAK 45(XP21.1) WILD-TYPE"   "DEL PEAK 45(XP21.1) MUTATED" 
                   TCGA-BR-6563                    TCGA-BR-6564 
"DEL PEAK 45(XP21.1) WILD-TYPE" "DEL PEAK 45(XP21.1) WILD-TYPE" 
                   TCGA-BR-6565                    TCGA-BR-6566 
"DEL PEAK 45(XP21.1) WILD-TYPE" "DEL PEAK 45(XP21.1) WILD-TYPE" 
                   TCGA-BR-6705                    TCGA-BR-6706 
"DEL PEAK 45(XP21.1) WILD-TYPE" "DEL PEAK 45(XP21.1) WILD-TYPE" 
                   TCGA-BR-6707                    TCGA-BR-6709 
"DEL PEAK 45(XP21.1) WILD-TYPE" "DEL PEAK 45(XP21.1) WILD-TYPE" 
                   TCGA-BR-6710                    TCGA-BR-6801 
"DEL PEAK 45(XP21.1) WILD-TYPE" "DEL PEAK 45(XP21.1) WILD-TYPE" 
                   TCGA-BR-6802                    TCGA-BR-6803 
"DEL PEAK 45(XP21.1) WILD-TYPE" "DEL PEAK 45(XP21.1) WILD-TYPE" 
                   TCGA-BR-6852                    TCGA-BR-7196 
"DEL PEAK 45(XP21.1) WILD-TYPE" "DEL PEAK 45(XP21.1) WILD-TYPE" 
                   TCGA-BR-7197                    TCGA-BR-7703 
"DEL PEAK 45(XP21.1) WILD-TYPE" "DEL PEAK 45(XP21.1) WILD-TYPE" 
                   TCGA-BR-7704                    TCGA-BR-7707 
"DEL PEAK 45(XP21.1) WILD-TYPE" "DEL PEAK 45(XP21.1) WILD-TYPE" 
                   TCGA-BR-7715                    TCGA-BR-7716 
"DEL PEAK 45(XP21.1) WILD-TYPE" "DEL PEAK 45(XP21.1) WILD-TYPE" 
                   TCGA-BR-7717                    TCGA-BR-7722 
"DEL PEAK 45(XP21.1) WILD-TYPE" "DEL PEAK 45(XP21.1) WILD-TYPE" 
                   TCGA-BR-7723                    TCGA-BR-7851 
"DEL PEAK 45(XP21.1) WILD-TYPE" "DEL PEAK 45(XP21.1) WILD-TYPE" 
                   TCGA-BR-7901                    TCGA-BR-7957 
"DEL PEAK 45(XP21.1) WILD-TYPE" "DEL PEAK 45(XP21.1) WILD-TYPE" 
                   TCGA-BR-7958                    TCGA-BR-7959 
"DEL PEAK 45(XP21.1) WILD-TYPE" "DEL PEAK 45(XP21.1) WILD-TYPE" 
                   TCGA-BR-8059                    TCGA-BR-8060 
"DEL PEAK 45(XP21.1) WILD-TYPE" "DEL PEAK 45(XP21.1) WILD-TYPE" 
                   TCGA-BR-8077                    TCGA-BR-8078 
"DEL PEAK 45(XP21.1) WILD-TYPE" "DEL PEAK 45(XP21.1) WILD-TYPE" 
                   TCGA-BR-8080                    TCGA-BR-8081 
"DEL PEAK 45(XP21.1) WILD-TYPE" "DEL PEAK 45(XP21.1) WILD-TYPE" 
                   TCGA-BR-8284                    TCGA-BR-8285 
"DEL PEAK 45(XP21.1) WILD-TYPE" "DEL PEAK 45(XP21.1) WILD-TYPE" 
                   TCGA-BR-8286                    TCGA-BR-8289 
"DEL PEAK 45(XP21.1) WILD-TYPE" "DEL PEAK 45(XP21.1) WILD-TYPE" 
                   TCGA-BR-8291                    TCGA-BR-8295 
"DEL PEAK 45(XP21.1) WILD-TYPE" "DEL PEAK 45(XP21.1) WILD-TYPE" 
                   TCGA-BR-8296                    TCGA-BR-8297 
"DEL PEAK 45(XP21.1) WILD-TYPE" "DEL PEAK 45(XP21.1) WILD-TYPE" 
                   TCGA-CD-5798                    TCGA-CD-5799 
"DEL PEAK 45(XP21.1) WILD-TYPE" "DEL PEAK 45(XP21.1) WILD-TYPE" 
                   TCGA-CD-5800                    TCGA-CD-5801 
"DEL PEAK 45(XP21.1) WILD-TYPE" "DEL PEAK 45(XP21.1) WILD-TYPE" 
                   TCGA-CD-5802                    TCGA-CD-5803 
  "DEL PEAK 45(XP21.1) MUTATED" "DEL PEAK 45(XP21.1) WILD-TYPE" 
                   TCGA-CG-4300                    TCGA-CG-4301 
"DEL PEAK 45(XP21.1) WILD-TYPE" "DEL PEAK 45(XP21.1) WILD-TYPE" 
                   TCGA-CG-4304                    TCGA-CG-4305 
"DEL PEAK 45(XP21.1) WILD-TYPE" "DEL PEAK 45(XP21.1) WILD-TYPE" 
                   TCGA-CG-4306                    TCGA-CG-4436 
"DEL PEAK 45(XP21.1) WILD-TYPE" "DEL PEAK 45(XP21.1) WILD-TYPE" 
                   TCGA-CG-4437                    TCGA-CG-4438 
  "DEL PEAK 45(XP21.1) MUTATED"   "DEL PEAK 45(XP21.1) MUTATED" 
                   TCGA-CG-4440                    TCGA-CG-4441 
"DEL PEAK 45(XP21.1) WILD-TYPE" "DEL PEAK 45(XP21.1) WILD-TYPE" 
                   TCGA-CG-4443                    TCGA-CG-4444 
  "DEL PEAK 45(XP21.1) MUTATED"   "DEL PEAK 45(XP21.1) MUTATED" 
                   TCGA-CG-4449                    TCGA-CG-4455 
  "DEL PEAK 45(XP21.1) MUTATED" "DEL PEAK 45(XP21.1) WILD-TYPE" 
                   TCGA-CG-4460                    TCGA-CG-4462 
  "DEL PEAK 45(XP21.1) MUTATED" "DEL PEAK 45(XP21.1) WILD-TYPE" 
                   TCGA-CG-4465                    TCGA-CG-4466 
"DEL PEAK 45(XP21.1) WILD-TYPE" "DEL PEAK 45(XP21.1) WILD-TYPE" 
                   TCGA-CG-4469                    TCGA-CG-4472 
  "DEL PEAK 45(XP21.1) MUTATED" "DEL PEAK 45(XP21.1) WILD-TYPE" 
                   TCGA-CG-4474                    TCGA-CG-4477 
"DEL PEAK 45(XP21.1) WILD-TYPE"   "DEL PEAK 45(XP21.1) MUTATED" 
                   TCGA-CG-5716                    TCGA-CG-5717 
"DEL PEAK 45(XP21.1) WILD-TYPE" "DEL PEAK 45(XP21.1) WILD-TYPE" 
                   TCGA-CG-5718                    TCGA-CG-5719 
"DEL PEAK 45(XP21.1) WILD-TYPE" "DEL PEAK 45(XP21.1) WILD-TYPE" 
                   TCGA-CG-5720                    TCGA-CG-5721 
"DEL PEAK 45(XP21.1) WILD-TYPE" "DEL PEAK 45(XP21.1) WILD-TYPE" 
                   TCGA-CG-5722                    TCGA-CG-5723 
"DEL PEAK 45(XP21.1) WILD-TYPE" "DEL PEAK 45(XP21.1) WILD-TYPE" 
                   TCGA-CG-5724                    TCGA-CG-5725 
  "DEL PEAK 45(XP21.1) MUTATED"   "DEL PEAK 45(XP21.1) MUTATED" 
                   TCGA-CG-5726                    TCGA-CG-5727 
"DEL PEAK 45(XP21.1) WILD-TYPE" "DEL PEAK 45(XP21.1) WILD-TYPE" 
                   TCGA-CG-5728                    TCGA-CG-5730 
"DEL PEAK 45(XP21.1) WILD-TYPE" "DEL PEAK 45(XP21.1) WILD-TYPE" 
                   TCGA-CG-5732                    TCGA-CG-5733 
"DEL PEAK 45(XP21.1) WILD-TYPE" "DEL PEAK 45(XP21.1) WILD-TYPE" 
                   TCGA-CG-5734                    TCGA-D7-5577 
  "DEL PEAK 45(XP21.1) MUTATED" "DEL PEAK 45(XP21.1) WILD-TYPE" 
                   TCGA-D7-5578                    TCGA-D7-5579 
"DEL PEAK 45(XP21.1) WILD-TYPE"   "DEL PEAK 45(XP21.1) MUTATED" 
                   TCGA-D7-6518                    TCGA-D7-6519 
  "DEL PEAK 45(XP21.1) MUTATED" "DEL PEAK 45(XP21.1) WILD-TYPE" 
                   TCGA-D7-6520                    TCGA-D7-6521 
"DEL PEAK 45(XP21.1) WILD-TYPE" "DEL PEAK 45(XP21.1) WILD-TYPE" 
                   TCGA-D7-6522                    TCGA-D7-6524 
"DEL PEAK 45(XP21.1) WILD-TYPE" "DEL PEAK 45(XP21.1) WILD-TYPE" 
                   TCGA-D7-6525                    TCGA-D7-6526 
  "DEL PEAK 45(XP21.1) MUTATED" "DEL PEAK 45(XP21.1) WILD-TYPE" 
                   TCGA-D7-6527                    TCGA-D7-6528 
"DEL PEAK 45(XP21.1) WILD-TYPE"   "DEL PEAK 45(XP21.1) MUTATED" 
                   TCGA-D7-6815                    TCGA-D7-6817 
  "DEL PEAK 45(XP21.1) MUTATED"   "DEL PEAK 45(XP21.1) MUTATED" 
                   TCGA-D7-6818                    TCGA-D7-6820 
"DEL PEAK 45(XP21.1) WILD-TYPE" "DEL PEAK 45(XP21.1) WILD-TYPE" 
                   TCGA-D7-6822                    TCGA-EQ-5647 
  "DEL PEAK 45(XP21.1) MUTATED"   "DEL PEAK 45(XP21.1) MUTATED" 
                   TCGA-EQ-8122                    TCGA-F1-6177 
  "DEL PEAK 45(XP21.1) MUTATED" "DEL PEAK 45(XP21.1) WILD-TYPE" 
                   TCGA-F1-6874                    TCGA-F1-6875 
"DEL PEAK 45(XP21.1) WILD-TYPE" "DEL PEAK 45(XP21.1) WILD-TYPE" 
                   TCGA-FP-7735                    TCGA-FP-7829 
"DEL PEAK 45(XP21.1) WILD-TYPE" "DEL PEAK 45(XP21.1) WILD-TYPE" 
                   TCGA-FP-7916                    TCGA-FP-7998 
"DEL PEAK 45(XP21.1) WILD-TYPE" "DEL PEAK 45(XP21.1) WILD-TYPE" 
                   TCGA-HJ-7597                    TCGA-IN-7806 
"DEL PEAK 45(XP21.1) WILD-TYPE"   "DEL PEAK 45(XP21.1) MUTATED" 
                   TCGA-IN-7808                    TCGA-IP-7968 
  "DEL PEAK 45(XP21.1) MUTATED" "DEL PEAK 45(XP21.1) WILD-TYPE" 
[1] "hr=" "1.6"
D71V2, continuous
D71V3, binary
[1] "tbl2"
                               cls
clus                            [,1] [,2]
  DEL PEAK 45(XP21.1) MUTATED      7   20
  DEL PEAK 45(XP21.1) WILD-TYPE   58   76
        clus
vv       DEL PEAK 45(XP21.1) MUTATED DEL PEAK 45(XP21.1) WILD-TYPE
  FEMALE                           7                            58
  MALE                            20                            76
D71V4, multiclass
D71V5, multiclass
    clus
vv   DEL PEAK 45(XP21.1) MUTATED DEL PEAK 45(XP21.1) WILD-TYPE
  T1                           1                             5
  T2                          12                            41
  T3                          10                            49
  T4                           3                            30
D71V6, multiclass
    clus
vv   DEL PEAK 45(XP21.1) MUTATED DEL PEAK 45(XP21.1) WILD-TYPE
  N0                           6                            44
  N1                           9                            48
  N2                           5                            19
  N3                           6                            13
D71V7, multiclass
    clus
vv   DEL PEAK 45(XP21.1) MUTATED DEL PEAK 45(XP21.1) WILD-TYPE
  M0                          22                           110
  M1                           4                            14
  MX                           1                            10
D71V8, multiclass
     clus
vv    DEL PEAK 45(XP21.1) MUTATED DEL PEAK 45(XP21.1) WILD-TYPE
  I                             5                            20
  II                            6                            37
  III                           8                            40
  IV                            6                            23
D71V9, binary
[1] "tbl2"
                               cls
clus                            [,1] [,2]
  DEL PEAK 45(XP21.1) MUTATED     27    0
  DEL PEAK 45(XP21.1) WILD-TYPE  129    5
     clus
vv    DEL PEAK 45(XP21.1) MUTATED DEL PEAK 45(XP21.1) WILD-TYPE
  NO                            0                             5
  YES                          27                           129

Clustering(72) Variable = Del Peak 46(Xq21.33) mutation analysis
D72V1, survival
                    TCGA-B7-5816                     TCGA-B7-5818 
"DEL PEAK 46(XQ21.33) WILD-TYPE"   "DEL PEAK 46(XQ21.33) MUTATED" 
                    TCGA-BR-6452                     TCGA-BR-6455 
"DEL PEAK 46(XQ21.33) WILD-TYPE" "DEL PEAK 46(XQ21.33) WILD-TYPE" 
                    TCGA-BR-6457                     TCGA-BR-6458 
"DEL PEAK 46(XQ21.33) WILD-TYPE" "DEL PEAK 46(XQ21.33) WILD-TYPE" 
                    TCGA-BR-6563                     TCGA-BR-6564 
"DEL PEAK 46(XQ21.33) WILD-TYPE" "DEL PEAK 46(XQ21.33) WILD-TYPE" 
                    TCGA-BR-6565                     TCGA-BR-6566 
"DEL PEAK 46(XQ21.33) WILD-TYPE" "DEL PEAK 46(XQ21.33) WILD-TYPE" 
                    TCGA-BR-6705                     TCGA-BR-6706 
"DEL PEAK 46(XQ21.33) WILD-TYPE" "DEL PEAK 46(XQ21.33) WILD-TYPE" 
                    TCGA-BR-6707                     TCGA-BR-6709 
"DEL PEAK 46(XQ21.33) WILD-TYPE" "DEL PEAK 46(XQ21.33) WILD-TYPE" 
                    TCGA-BR-6710                     TCGA-BR-6801 
"DEL PEAK 46(XQ21.33) WILD-TYPE" "DEL PEAK 46(XQ21.33) WILD-TYPE" 
                    TCGA-BR-6802                     TCGA-BR-6803 
"DEL PEAK 46(XQ21.33) WILD-TYPE" "DEL PEAK 46(XQ21.33) WILD-TYPE" 
                    TCGA-BR-6852                     TCGA-BR-7196 
"DEL PEAK 46(XQ21.33) WILD-TYPE" "DEL PEAK 46(XQ21.33) WILD-TYPE" 
                    TCGA-BR-7197                     TCGA-BR-7703 
  "DEL PEAK 46(XQ21.33) MUTATED" "DEL PEAK 46(XQ21.33) WILD-TYPE" 
                    TCGA-BR-7704                     TCGA-BR-7707 
"DEL PEAK 46(XQ21.33) WILD-TYPE" "DEL PEAK 46(XQ21.33) WILD-TYPE" 
                    TCGA-BR-7715                     TCGA-BR-7716 
"DEL PEAK 46(XQ21.33) WILD-TYPE"   "DEL PEAK 46(XQ21.33) MUTATED" 
                    TCGA-BR-7717                     TCGA-BR-7722 
"DEL PEAK 46(XQ21.33) WILD-TYPE" "DEL PEAK 46(XQ21.33) WILD-TYPE" 
                    TCGA-BR-7723                     TCGA-BR-7851 
"DEL PEAK 46(XQ21.33) WILD-TYPE" "DEL PEAK 46(XQ21.33) WILD-TYPE" 
                    TCGA-BR-7901                     TCGA-BR-7957 
"DEL PEAK 46(XQ21.33) WILD-TYPE" "DEL PEAK 46(XQ21.33) WILD-TYPE" 
                    TCGA-BR-7958                     TCGA-BR-7959 
"DEL PEAK 46(XQ21.33) WILD-TYPE" "DEL PEAK 46(XQ21.33) WILD-TYPE" 
                    TCGA-BR-8059                     TCGA-BR-8060 
"DEL PEAK 46(XQ21.33) WILD-TYPE" "DEL PEAK 46(XQ21.33) WILD-TYPE" 
                    TCGA-BR-8077                     TCGA-BR-8078 
"DEL PEAK 46(XQ21.33) WILD-TYPE" "DEL PEAK 46(XQ21.33) WILD-TYPE" 
                    TCGA-BR-8080                     TCGA-BR-8081 
"DEL PEAK 46(XQ21.33) WILD-TYPE" "DEL PEAK 46(XQ21.33) WILD-TYPE" 
                    TCGA-BR-8284                     TCGA-BR-8285 
"DEL PEAK 46(XQ21.33) WILD-TYPE" "DEL PEAK 46(XQ21.33) WILD-TYPE" 
                    TCGA-BR-8286                     TCGA-BR-8289 
"DEL PEAK 46(XQ21.33) WILD-TYPE" "DEL PEAK 46(XQ21.33) WILD-TYPE" 
                    TCGA-BR-8291                     TCGA-BR-8295 
"DEL PEAK 46(XQ21.33) WILD-TYPE" "DEL PEAK 46(XQ21.33) WILD-TYPE" 
                    TCGA-BR-8296                     TCGA-BR-8297 
"DEL PEAK 46(XQ21.33) WILD-TYPE" "DEL PEAK 46(XQ21.33) WILD-TYPE" 
                    TCGA-CD-5798                     TCGA-CD-5799 
"DEL PEAK 46(XQ21.33) WILD-TYPE" "DEL PEAK 46(XQ21.33) WILD-TYPE" 
                    TCGA-CD-5800                     TCGA-CD-5801 
  "DEL PEAK 46(XQ21.33) MUTATED" "DEL PEAK 46(XQ21.33) WILD-TYPE" 
                    TCGA-CD-5802                     TCGA-CD-5803 
  "DEL PEAK 46(XQ21.33) MUTATED" "DEL PEAK 46(XQ21.33) WILD-TYPE" 
                    TCGA-CG-4300                     TCGA-CG-4301 
  "DEL PEAK 46(XQ21.33) MUTATED"   "DEL PEAK 46(XQ21.33) MUTATED" 
                    TCGA-CG-4304                     TCGA-CG-4305 
"DEL PEAK 46(XQ21.33) WILD-TYPE" "DEL PEAK 46(XQ21.33) WILD-TYPE" 
                    TCGA-CG-4306                     TCGA-CG-4436 
"DEL PEAK 46(XQ21.33) WILD-TYPE"   "DEL PEAK 46(XQ21.33) MUTATED" 
                    TCGA-CG-4437                     TCGA-CG-4438 
"DEL PEAK 46(XQ21.33) WILD-TYPE" "DEL PEAK 46(XQ21.33) WILD-TYPE" 
                    TCGA-CG-4440                     TCGA-CG-4441 
"DEL PEAK 46(XQ21.33) WILD-TYPE" "DEL PEAK 46(XQ21.33) WILD-TYPE" 
                    TCGA-CG-4443                     TCGA-CG-4444 
  "DEL PEAK 46(XQ21.33) MUTATED"   "DEL PEAK 46(XQ21.33) MUTATED" 
                    TCGA-CG-4449                     TCGA-CG-4455 
  "DEL PEAK 46(XQ21.33) MUTATED" "DEL PEAK 46(XQ21.33) WILD-TYPE" 
                    TCGA-CG-4460                     TCGA-CG-4462 
"DEL PEAK 46(XQ21.33) WILD-TYPE" "DEL PEAK 46(XQ21.33) WILD-TYPE" 
                    TCGA-CG-4465                     TCGA-CG-4466 
"DEL PEAK 46(XQ21.33) WILD-TYPE" "DEL PEAK 46(XQ21.33) WILD-TYPE" 
                    TCGA-CG-4469                     TCGA-CG-4472 
  "DEL PEAK 46(XQ21.33) MUTATED" "DEL PEAK 46(XQ21.33) WILD-TYPE" 
                    TCGA-CG-4474                     TCGA-CG-4477 
"DEL PEAK 46(XQ21.33) WILD-TYPE"   "DEL PEAK 46(XQ21.33) MUTATED" 
                    TCGA-CG-5716                     TCGA-CG-5717 
"DEL PEAK 46(XQ21.33) WILD-TYPE" "DEL PEAK 46(XQ21.33) WILD-TYPE" 
                    TCGA-CG-5718                     TCGA-CG-5719 
"DEL PEAK 46(XQ21.33) WILD-TYPE" "DEL PEAK 46(XQ21.33) WILD-TYPE" 
                    TCGA-CG-5720                     TCGA-CG-5721 
"DEL PEAK 46(XQ21.33) WILD-TYPE" "DEL PEAK 46(XQ21.33) WILD-TYPE" 
                    TCGA-CG-5722                     TCGA-CG-5723 
"DEL PEAK 46(XQ21.33) WILD-TYPE" "DEL PEAK 46(XQ21.33) WILD-TYPE" 
                    TCGA-CG-5724                     TCGA-CG-5725 
"DEL PEAK 46(XQ21.33) WILD-TYPE"   "DEL PEAK 46(XQ21.33) MUTATED" 
                    TCGA-CG-5726                     TCGA-CG-5727 
"DEL PEAK 46(XQ21.33) WILD-TYPE" "DEL PEAK 46(XQ21.33) WILD-TYPE" 
                    TCGA-CG-5728                     TCGA-CG-5730 
"DEL PEAK 46(XQ21.33) WILD-TYPE" "DEL PEAK 46(XQ21.33) WILD-TYPE" 
                    TCGA-CG-5732                     TCGA-CG-5733 
"DEL PEAK 46(XQ21.33) WILD-TYPE" "DEL PEAK 46(XQ21.33) WILD-TYPE" 
                    TCGA-CG-5734                     TCGA-D7-5577 
"DEL PEAK 46(XQ21.33) WILD-TYPE" "DEL PEAK 46(XQ21.33) WILD-TYPE" 
                    TCGA-D7-5578                     TCGA-D7-5579 
"DEL PEAK 46(XQ21.33) WILD-TYPE" "DEL PEAK 46(XQ21.33) WILD-TYPE" 
                    TCGA-D7-6518                     TCGA-D7-6519 
"DEL PEAK 46(XQ21.33) WILD-TYPE"   "DEL PEAK 46(XQ21.33) MUTATED" 
                    TCGA-D7-6520                     TCGA-D7-6521 
"DEL PEAK 46(XQ21.33) WILD-TYPE" "DEL PEAK 46(XQ21.33) WILD-TYPE" 
                    TCGA-D7-6522                     TCGA-D7-6524 
"DEL PEAK 46(XQ21.33) WILD-TYPE" "DEL PEAK 46(XQ21.33) WILD-TYPE" 
                    TCGA-D7-6525                     TCGA-D7-6526 
"DEL PEAK 46(XQ21.33) WILD-TYPE" "DEL PEAK 46(XQ21.33) WILD-TYPE" 
                    TCGA-D7-6527                     TCGA-D7-6528 
"DEL PEAK 46(XQ21.33) WILD-TYPE"   "DEL PEAK 46(XQ21.33) MUTATED" 
                    TCGA-D7-6815                     TCGA-D7-6817 
"DEL PEAK 46(XQ21.33) WILD-TYPE" "DEL PEAK 46(XQ21.33) WILD-TYPE" 
                    TCGA-D7-6818                     TCGA-D7-6820 
"DEL PEAK 46(XQ21.33) WILD-TYPE" "DEL PEAK 46(XQ21.33) WILD-TYPE" 
                    TCGA-D7-6822                     TCGA-EQ-5647 
  "DEL PEAK 46(XQ21.33) MUTATED" "DEL PEAK 46(XQ21.33) WILD-TYPE" 
                    TCGA-EQ-8122                     TCGA-F1-6177 
  "DEL PEAK 46(XQ21.33) MUTATED" "DEL PEAK 46(XQ21.33) WILD-TYPE" 
                    TCGA-F1-6874                     TCGA-F1-6875 
"DEL PEAK 46(XQ21.33) WILD-TYPE" "DEL PEAK 46(XQ21.33) WILD-TYPE" 
                    TCGA-FP-7735                     TCGA-FP-7829 
"DEL PEAK 46(XQ21.33) WILD-TYPE" "DEL PEAK 46(XQ21.33) WILD-TYPE" 
                    TCGA-FP-7916                     TCGA-FP-7998 
"DEL PEAK 46(XQ21.33) WILD-TYPE" "DEL PEAK 46(XQ21.33) WILD-TYPE" 
                    TCGA-HJ-7597                     TCGA-IN-7806 
"DEL PEAK 46(XQ21.33) WILD-TYPE"   "DEL PEAK 46(XQ21.33) MUTATED" 
                    TCGA-IN-7808                     TCGA-IP-7968 
"DEL PEAK 46(XQ21.33) WILD-TYPE" "DEL PEAK 46(XQ21.33) WILD-TYPE" 
                    TCGA-B7-5816                     TCGA-B7-5818 
"DEL PEAK 46(XQ21.33) WILD-TYPE"   "DEL PEAK 46(XQ21.33) MUTATED" 
                    TCGA-BR-6452                     TCGA-BR-6455 
"DEL PEAK 46(XQ21.33) WILD-TYPE" "DEL PEAK 46(XQ21.33) WILD-TYPE" 
                    TCGA-BR-6457                     TCGA-BR-6458 
"DEL PEAK 46(XQ21.33) WILD-TYPE" "DEL PEAK 46(XQ21.33) WILD-TYPE" 
                    TCGA-BR-6563                     TCGA-BR-6564 
"DEL PEAK 46(XQ21.33) WILD-TYPE" "DEL PEAK 46(XQ21.33) WILD-TYPE" 
                    TCGA-BR-6565                     TCGA-BR-6566 
"DEL PEAK 46(XQ21.33) WILD-TYPE" "DEL PEAK 46(XQ21.33) WILD-TYPE" 
                    TCGA-BR-6705                     TCGA-BR-6706 
"DEL PEAK 46(XQ21.33) WILD-TYPE" "DEL PEAK 46(XQ21.33) WILD-TYPE" 
                    TCGA-BR-6707                     TCGA-BR-6709 
"DEL PEAK 46(XQ21.33) WILD-TYPE" "DEL PEAK 46(XQ21.33) WILD-TYPE" 
                    TCGA-BR-6710                     TCGA-BR-6801 
"DEL PEAK 46(XQ21.33) WILD-TYPE" "DEL PEAK 46(XQ21.33) WILD-TYPE" 
                    TCGA-BR-6802                     TCGA-BR-6803 
"DEL PEAK 46(XQ21.33) WILD-TYPE" "DEL PEAK 46(XQ21.33) WILD-TYPE" 
                    TCGA-BR-6852                     TCGA-BR-7196 
"DEL PEAK 46(XQ21.33) WILD-TYPE" "DEL PEAK 46(XQ21.33) WILD-TYPE" 
                    TCGA-BR-7197                     TCGA-BR-7703 
  "DEL PEAK 46(XQ21.33) MUTATED" "DEL PEAK 46(XQ21.33) WILD-TYPE" 
                    TCGA-BR-7704                     TCGA-BR-7707 
"DEL PEAK 46(XQ21.33) WILD-TYPE" "DEL PEAK 46(XQ21.33) WILD-TYPE" 
                    TCGA-BR-7715                     TCGA-BR-7716 
"DEL PEAK 46(XQ21.33) WILD-TYPE"   "DEL PEAK 46(XQ21.33) MUTATED" 
                    TCGA-BR-7717                     TCGA-BR-7722 
"DEL PEAK 46(XQ21.33) WILD-TYPE" "DEL PEAK 46(XQ21.33) WILD-TYPE" 
                    TCGA-BR-7723                     TCGA-BR-7851 
"DEL PEAK 46(XQ21.33) WILD-TYPE" "DEL PEAK 46(XQ21.33) WILD-TYPE" 
                    TCGA-BR-7901                     TCGA-BR-7957 
"DEL PEAK 46(XQ21.33) WILD-TYPE" "DEL PEAK 46(XQ21.33) WILD-TYPE" 
                    TCGA-BR-7958                     TCGA-BR-7959 
"DEL PEAK 46(XQ21.33) WILD-TYPE" "DEL PEAK 46(XQ21.33) WILD-TYPE" 
                    TCGA-BR-8059                     TCGA-BR-8060 
"DEL PEAK 46(XQ21.33) WILD-TYPE" "DEL PEAK 46(XQ21.33) WILD-TYPE" 
                    TCGA-BR-8077                     TCGA-BR-8078 
"DEL PEAK 46(XQ21.33) WILD-TYPE" "DEL PEAK 46(XQ21.33) WILD-TYPE" 
                    TCGA-BR-8080                     TCGA-BR-8081 
"DEL PEAK 46(XQ21.33) WILD-TYPE" "DEL PEAK 46(XQ21.33) WILD-TYPE" 
                    TCGA-BR-8284                     TCGA-BR-8285 
"DEL PEAK 46(XQ21.33) WILD-TYPE" "DEL PEAK 46(XQ21.33) WILD-TYPE" 
                    TCGA-BR-8286                     TCGA-BR-8289 
"DEL PEAK 46(XQ21.33) WILD-TYPE" "DEL PEAK 46(XQ21.33) WILD-TYPE" 
                    TCGA-BR-8291                     TCGA-BR-8295 
"DEL PEAK 46(XQ21.33) WILD-TYPE" "DEL PEAK 46(XQ21.33) WILD-TYPE" 
                    TCGA-BR-8296                     TCGA-BR-8297 
"DEL PEAK 46(XQ21.33) WILD-TYPE" "DEL PEAK 46(XQ21.33) WILD-TYPE" 
                    TCGA-CD-5798                     TCGA-CD-5799 
"DEL PEAK 46(XQ21.33) WILD-TYPE" "DEL PEAK 46(XQ21.33) WILD-TYPE" 
                    TCGA-CD-5800                     TCGA-CD-5801 
  "DEL PEAK 46(XQ21.33) MUTATED" "DEL PEAK 46(XQ21.33) WILD-TYPE" 
                    TCGA-CD-5802                     TCGA-CD-5803 
  "DEL PEAK 46(XQ21.33) MUTATED" "DEL PEAK 46(XQ21.33) WILD-TYPE" 
                    TCGA-CG-4300                     TCGA-CG-4301 
  "DEL PEAK 46(XQ21.33) MUTATED"   "DEL PEAK 46(XQ21.33) MUTATED" 
                    TCGA-CG-4304                     TCGA-CG-4305 
"DEL PEAK 46(XQ21.33) WILD-TYPE" "DEL PEAK 46(XQ21.33) WILD-TYPE" 
                    TCGA-CG-4306                     TCGA-CG-4436 
"DEL PEAK 46(XQ21.33) WILD-TYPE"   "DEL PEAK 46(XQ21.33) MUTATED" 
                    TCGA-CG-4437                     TCGA-CG-4438 
"DEL PEAK 46(XQ21.33) WILD-TYPE" "DEL PEAK 46(XQ21.33) WILD-TYPE" 
                    TCGA-CG-4440                     TCGA-CG-4441 
"DEL PEAK 46(XQ21.33) WILD-TYPE" "DEL PEAK 46(XQ21.33) WILD-TYPE" 
                    TCGA-CG-4443                     TCGA-CG-4444 
  "DEL PEAK 46(XQ21.33) MUTATED"   "DEL PEAK 46(XQ21.33) MUTATED" 
                    TCGA-CG-4449                     TCGA-CG-4455 
  "DEL PEAK 46(XQ21.33) MUTATED" "DEL PEAK 46(XQ21.33) WILD-TYPE" 
                    TCGA-CG-4460                     TCGA-CG-4462 
"DEL PEAK 46(XQ21.33) WILD-TYPE" "DEL PEAK 46(XQ21.33) WILD-TYPE" 
                    TCGA-CG-4465                     TCGA-CG-4466 
"DEL PEAK 46(XQ21.33) WILD-TYPE" "DEL PEAK 46(XQ21.33) WILD-TYPE" 
                    TCGA-CG-4469                     TCGA-CG-4472 
  "DEL PEAK 46(XQ21.33) MUTATED" "DEL PEAK 46(XQ21.33) WILD-TYPE" 
                    TCGA-CG-4474                     TCGA-CG-4477 
"DEL PEAK 46(XQ21.33) WILD-TYPE"   "DEL PEAK 46(XQ21.33) MUTATED" 
                    TCGA-CG-5716                     TCGA-CG-5717 
"DEL PEAK 46(XQ21.33) WILD-TYPE" "DEL PEAK 46(XQ21.33) WILD-TYPE" 
                    TCGA-CG-5718                     TCGA-CG-5719 
"DEL PEAK 46(XQ21.33) WILD-TYPE" "DEL PEAK 46(XQ21.33) WILD-TYPE" 
                    TCGA-CG-5720                     TCGA-CG-5721 
"DEL PEAK 46(XQ21.33) WILD-TYPE" "DEL PEAK 46(XQ21.33) WILD-TYPE" 
                    TCGA-CG-5722                     TCGA-CG-5723 
"DEL PEAK 46(XQ21.33) WILD-TYPE" "DEL PEAK 46(XQ21.33) WILD-TYPE" 
                    TCGA-CG-5724                     TCGA-CG-5725 
"DEL PEAK 46(XQ21.33) WILD-TYPE"   "DEL PEAK 46(XQ21.33) MUTATED" 
                    TCGA-CG-5726                     TCGA-CG-5727 
"DEL PEAK 46(XQ21.33) WILD-TYPE" "DEL PEAK 46(XQ21.33) WILD-TYPE" 
                    TCGA-CG-5728                     TCGA-CG-5730 
"DEL PEAK 46(XQ21.33) WILD-TYPE" "DEL PEAK 46(XQ21.33) WILD-TYPE" 
                    TCGA-CG-5732                     TCGA-CG-5733 
"DEL PEAK 46(XQ21.33) WILD-TYPE" "DEL PEAK 46(XQ21.33) WILD-TYPE" 
                    TCGA-CG-5734                     TCGA-D7-5577 
"DEL PEAK 46(XQ21.33) WILD-TYPE" "DEL PEAK 46(XQ21.33) WILD-TYPE" 
                    TCGA-D7-5578                     TCGA-D7-5579 
"DEL PEAK 46(XQ21.33) WILD-TYPE" "DEL PEAK 46(XQ21.33) WILD-TYPE" 
                    TCGA-D7-6518                     TCGA-D7-6519 
"DEL PEAK 46(XQ21.33) WILD-TYPE"   "DEL PEAK 46(XQ21.33) MUTATED" 
                    TCGA-D7-6520                     TCGA-D7-6521 
"DEL PEAK 46(XQ21.33) WILD-TYPE" "DEL PEAK 46(XQ21.33) WILD-TYPE" 
                    TCGA-D7-6522                     TCGA-D7-6524 
"DEL PEAK 46(XQ21.33) WILD-TYPE" "DEL PEAK 46(XQ21.33) WILD-TYPE" 
                    TCGA-D7-6525                     TCGA-D7-6526 
"DEL PEAK 46(XQ21.33) WILD-TYPE" "DEL PEAK 46(XQ21.33) WILD-TYPE" 
                    TCGA-D7-6527                     TCGA-D7-6528 
"DEL PEAK 46(XQ21.33) WILD-TYPE"   "DEL PEAK 46(XQ21.33) MUTATED" 
                    TCGA-D7-6815                     TCGA-D7-6817 
"DEL PEAK 46(XQ21.33) WILD-TYPE" "DEL PEAK 46(XQ21.33) WILD-TYPE" 
                    TCGA-D7-6818                     TCGA-D7-6820 
"DEL PEAK 46(XQ21.33) WILD-TYPE" "DEL PEAK 46(XQ21.33) WILD-TYPE" 
                    TCGA-D7-6822                     TCGA-EQ-5647 
  "DEL PEAK 46(XQ21.33) MUTATED" "DEL PEAK 46(XQ21.33) WILD-TYPE" 
                    TCGA-EQ-8122                     TCGA-F1-6177 
  "DEL PEAK 46(XQ21.33) MUTATED" "DEL PEAK 46(XQ21.33) WILD-TYPE" 
                    TCGA-F1-6874                     TCGA-F1-6875 
"DEL PEAK 46(XQ21.33) WILD-TYPE" "DEL PEAK 46(XQ21.33) WILD-TYPE" 
                    TCGA-FP-7735                     TCGA-FP-7829 
"DEL PEAK 46(XQ21.33) WILD-TYPE" "DEL PEAK 46(XQ21.33) WILD-TYPE" 
                    TCGA-FP-7916                     TCGA-FP-7998 
"DEL PEAK 46(XQ21.33) WILD-TYPE" "DEL PEAK 46(XQ21.33) WILD-TYPE" 
                    TCGA-HJ-7597                     TCGA-IN-7806 
"DEL PEAK 46(XQ21.33) WILD-TYPE"   "DEL PEAK 46(XQ21.33) MUTATED" 
                    TCGA-IN-7808                     TCGA-IP-7968 
"DEL PEAK 46(XQ21.33) WILD-TYPE" "DEL PEAK 46(XQ21.33) WILD-TYPE" 
                    TCGA-B7-5816                     TCGA-B7-5818 
"DEL PEAK 46(XQ21.33) WILD-TYPE"   "DEL PEAK 46(XQ21.33) MUTATED" 
                    TCGA-BR-6452                     TCGA-BR-6455 
"DEL PEAK 46(XQ21.33) WILD-TYPE" "DEL PEAK 46(XQ21.33) WILD-TYPE" 
                    TCGA-BR-6457                     TCGA-BR-6458 
"DEL PEAK 46(XQ21.33) WILD-TYPE" "DEL PEAK 46(XQ21.33) WILD-TYPE" 
                    TCGA-BR-6563                     TCGA-BR-6564 
"DEL PEAK 46(XQ21.33) WILD-TYPE" "DEL PEAK 46(XQ21.33) WILD-TYPE" 
                    TCGA-BR-6565                     TCGA-BR-6566 
"DEL PEAK 46(XQ21.33) WILD-TYPE" "DEL PEAK 46(XQ21.33) WILD-TYPE" 
                    TCGA-BR-6705                     TCGA-BR-6706 
"DEL PEAK 46(XQ21.33) WILD-TYPE" "DEL PEAK 46(XQ21.33) WILD-TYPE" 
                    TCGA-BR-6707                     TCGA-BR-6709 
"DEL PEAK 46(XQ21.33) WILD-TYPE" "DEL PEAK 46(XQ21.33) WILD-TYPE" 
                    TCGA-BR-6710                     TCGA-BR-6801 
"DEL PEAK 46(XQ21.33) WILD-TYPE" "DEL PEAK 46(XQ21.33) WILD-TYPE" 
                    TCGA-BR-6802                     TCGA-BR-6803 
"DEL PEAK 46(XQ21.33) WILD-TYPE" "DEL PEAK 46(XQ21.33) WILD-TYPE" 
                    TCGA-BR-6852                     TCGA-BR-7196 
"DEL PEAK 46(XQ21.33) WILD-TYPE" "DEL PEAK 46(XQ21.33) WILD-TYPE" 
                    TCGA-BR-7197                     TCGA-BR-7703 
  "DEL PEAK 46(XQ21.33) MUTATED" "DEL PEAK 46(XQ21.33) WILD-TYPE" 
                    TCGA-BR-7704                     TCGA-BR-7707 
"DEL PEAK 46(XQ21.33) WILD-TYPE" "DEL PEAK 46(XQ21.33) WILD-TYPE" 
                    TCGA-BR-7715                     TCGA-BR-7716 
"DEL PEAK 46(XQ21.33) WILD-TYPE"   "DEL PEAK 46(XQ21.33) MUTATED" 
                    TCGA-BR-7717                     TCGA-BR-7722 
"DEL PEAK 46(XQ21.33) WILD-TYPE" "DEL PEAK 46(XQ21.33) WILD-TYPE" 
                    TCGA-BR-7723                     TCGA-BR-7851 
"DEL PEAK 46(XQ21.33) WILD-TYPE" "DEL PEAK 46(XQ21.33) WILD-TYPE" 
                    TCGA-BR-7901                     TCGA-BR-7957 
"DEL PEAK 46(XQ21.33) WILD-TYPE" "DEL PEAK 46(XQ21.33) WILD-TYPE" 
                    TCGA-BR-7958                     TCGA-BR-7959 
"DEL PEAK 46(XQ21.33) WILD-TYPE" "DEL PEAK 46(XQ21.33) WILD-TYPE" 
                    TCGA-BR-8059                     TCGA-BR-8060 
"DEL PEAK 46(XQ21.33) WILD-TYPE" "DEL PEAK 46(XQ21.33) WILD-TYPE" 
                    TCGA-BR-8077                     TCGA-BR-8078 
"DEL PEAK 46(XQ21.33) WILD-TYPE" "DEL PEAK 46(XQ21.33) WILD-TYPE" 
                    TCGA-BR-8080                     TCGA-BR-8081 
"DEL PEAK 46(XQ21.33) WILD-TYPE" "DEL PEAK 46(XQ21.33) WILD-TYPE" 
                    TCGA-BR-8284                     TCGA-BR-8285 
"DEL PEAK 46(XQ21.33) WILD-TYPE" "DEL PEAK 46(XQ21.33) WILD-TYPE" 
                    TCGA-BR-8286                     TCGA-BR-8289 
"DEL PEAK 46(XQ21.33) WILD-TYPE" "DEL PEAK 46(XQ21.33) WILD-TYPE" 
                    TCGA-BR-8291                     TCGA-BR-8295 
"DEL PEAK 46(XQ21.33) WILD-TYPE" "DEL PEAK 46(XQ21.33) WILD-TYPE" 
                    TCGA-BR-8296                     TCGA-BR-8297 
"DEL PEAK 46(XQ21.33) WILD-TYPE" "DEL PEAK 46(XQ21.33) WILD-TYPE" 
                    TCGA-CD-5798                     TCGA-CD-5799 
"DEL PEAK 46(XQ21.33) WILD-TYPE" "DEL PEAK 46(XQ21.33) WILD-TYPE" 
                    TCGA-CD-5800                     TCGA-CD-5801 
  "DEL PEAK 46(XQ21.33) MUTATED" "DEL PEAK 46(XQ21.33) WILD-TYPE" 
                    TCGA-CD-5802                     TCGA-CD-5803 
  "DEL PEAK 46(XQ21.33) MUTATED" "DEL PEAK 46(XQ21.33) WILD-TYPE" 
                    TCGA-CG-4300                     TCGA-CG-4301 
  "DEL PEAK 46(XQ21.33) MUTATED"   "DEL PEAK 46(XQ21.33) MUTATED" 
                    TCGA-CG-4304                     TCGA-CG-4305 
"DEL PEAK 46(XQ21.33) WILD-TYPE" "DEL PEAK 46(XQ21.33) WILD-TYPE" 
                    TCGA-CG-4306                     TCGA-CG-4436 
"DEL PEAK 46(XQ21.33) WILD-TYPE"   "DEL PEAK 46(XQ21.33) MUTATED" 
                    TCGA-CG-4437                     TCGA-CG-4438 
"DEL PEAK 46(XQ21.33) WILD-TYPE" "DEL PEAK 46(XQ21.33) WILD-TYPE" 
                    TCGA-CG-4440                     TCGA-CG-4441 
"DEL PEAK 46(XQ21.33) WILD-TYPE" "DEL PEAK 46(XQ21.33) WILD-TYPE" 
                    TCGA-CG-4443                     TCGA-CG-4444 
  "DEL PEAK 46(XQ21.33) MUTATED"   "DEL PEAK 46(XQ21.33) MUTATED" 
                    TCGA-CG-4449                     TCGA-CG-4455 
  "DEL PEAK 46(XQ21.33) MUTATED" "DEL PEAK 46(XQ21.33) WILD-TYPE" 
                    TCGA-CG-4460                     TCGA-CG-4462 
"DEL PEAK 46(XQ21.33) WILD-TYPE" "DEL PEAK 46(XQ21.33) WILD-TYPE" 
                    TCGA-CG-4465                     TCGA-CG-4466 
"DEL PEAK 46(XQ21.33) WILD-TYPE" "DEL PEAK 46(XQ21.33) WILD-TYPE" 
                    TCGA-CG-4469                     TCGA-CG-4472 
  "DEL PEAK 46(XQ21.33) MUTATED" "DEL PEAK 46(XQ21.33) WILD-TYPE" 
                    TCGA-CG-4474                     TCGA-CG-4477 
"DEL PEAK 46(XQ21.33) WILD-TYPE"   "DEL PEAK 46(XQ21.33) MUTATED" 
                    TCGA-CG-5716                     TCGA-CG-5717 
"DEL PEAK 46(XQ21.33) WILD-TYPE" "DEL PEAK 46(XQ21.33) WILD-TYPE" 
                    TCGA-CG-5718                     TCGA-CG-5719 
"DEL PEAK 46(XQ21.33) WILD-TYPE" "DEL PEAK 46(XQ21.33) WILD-TYPE" 
                    TCGA-CG-5720                     TCGA-CG-5721 
"DEL PEAK 46(XQ21.33) WILD-TYPE" "DEL PEAK 46(XQ21.33) WILD-TYPE" 
                    TCGA-CG-5722                     TCGA-CG-5723 
"DEL PEAK 46(XQ21.33) WILD-TYPE" "DEL PEAK 46(XQ21.33) WILD-TYPE" 
                    TCGA-CG-5724                     TCGA-CG-5725 
"DEL PEAK 46(XQ21.33) WILD-TYPE"   "DEL PEAK 46(XQ21.33) MUTATED" 
                    TCGA-CG-5726                     TCGA-CG-5727 
"DEL PEAK 46(XQ21.33) WILD-TYPE" "DEL PEAK 46(XQ21.33) WILD-TYPE" 
                    TCGA-CG-5728                     TCGA-CG-5730 
"DEL PEAK 46(XQ21.33) WILD-TYPE" "DEL PEAK 46(XQ21.33) WILD-TYPE" 
                    TCGA-CG-5732                     TCGA-CG-5733 
"DEL PEAK 46(XQ21.33) WILD-TYPE" "DEL PEAK 46(XQ21.33) WILD-TYPE" 
                    TCGA-CG-5734                     TCGA-D7-5577 
"DEL PEAK 46(XQ21.33) WILD-TYPE" "DEL PEAK 46(XQ21.33) WILD-TYPE" 
                    TCGA-D7-5578                     TCGA-D7-5579 
"DEL PEAK 46(XQ21.33) WILD-TYPE" "DEL PEAK 46(XQ21.33) WILD-TYPE" 
                    TCGA-D7-6518                     TCGA-D7-6519 
"DEL PEAK 46(XQ21.33) WILD-TYPE"   "DEL PEAK 46(XQ21.33) MUTATED" 
                    TCGA-D7-6520                     TCGA-D7-6521 
"DEL PEAK 46(XQ21.33) WILD-TYPE" "DEL PEAK 46(XQ21.33) WILD-TYPE" 
                    TCGA-D7-6522                     TCGA-D7-6524 
"DEL PEAK 46(XQ21.33) WILD-TYPE" "DEL PEAK 46(XQ21.33) WILD-TYPE" 
                    TCGA-D7-6525                     TCGA-D7-6526 
"DEL PEAK 46(XQ21.33) WILD-TYPE" "DEL PEAK 46(XQ21.33) WILD-TYPE" 
                    TCGA-D7-6527                     TCGA-D7-6528 
"DEL PEAK 46(XQ21.33) WILD-TYPE"   "DEL PEAK 46(XQ21.33) MUTATED" 
                    TCGA-D7-6815                     TCGA-D7-6817 
"DEL PEAK 46(XQ21.33) WILD-TYPE" "DEL PEAK 46(XQ21.33) WILD-TYPE" 
                    TCGA-D7-6818                     TCGA-D7-6820 
"DEL PEAK 46(XQ21.33) WILD-TYPE" "DEL PEAK 46(XQ21.33) WILD-TYPE" 
                    TCGA-D7-6822                     TCGA-EQ-5647 
  "DEL PEAK 46(XQ21.33) MUTATED" "DEL PEAK 46(XQ21.33) WILD-TYPE" 
                    TCGA-EQ-8122                     TCGA-F1-6177 
  "DEL PEAK 46(XQ21.33) MUTATED" "DEL PEAK 46(XQ21.33) WILD-TYPE" 
                    TCGA-F1-6874                     TCGA-F1-6875 
"DEL PEAK 46(XQ21.33) WILD-TYPE" "DEL PEAK 46(XQ21.33) WILD-TYPE" 
                    TCGA-FP-7735                     TCGA-FP-7829 
"DEL PEAK 46(XQ21.33) WILD-TYPE" "DEL PEAK 46(XQ21.33) WILD-TYPE" 
                    TCGA-FP-7916                     TCGA-FP-7998 
"DEL PEAK 46(XQ21.33) WILD-TYPE" "DEL PEAK 46(XQ21.33) WILD-TYPE" 
                    TCGA-HJ-7597                     TCGA-IN-7806 
"DEL PEAK 46(XQ21.33) WILD-TYPE"   "DEL PEAK 46(XQ21.33) MUTATED" 
                    TCGA-IN-7808                     TCGA-IP-7968 
"DEL PEAK 46(XQ21.33) WILD-TYPE" "DEL PEAK 46(XQ21.33) WILD-TYPE" 
[1] "hr=" "2.2"
D72V2, continuous
D72V3, binary
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  DEL PEAK 46(XQ21.33) MUTATED      8   13
  DEL PEAK 46(XQ21.33) WILD-TYPE   57   83
        clus
vv       DEL PEAK 46(XQ21.33) MUTATED DEL PEAK 46(XQ21.33) WILD-TYPE
  FEMALE                            8                             57
  MALE                             13                             83
D72V4, multiclass
D72V5, multiclass
    clus
vv   DEL PEAK 46(XQ21.33) MUTATED DEL PEAK 46(XQ21.33) WILD-TYPE
  T1                            1                              5
  T2                           11                             42
  T3                            7                             52
  T4                            2                             31
D72V6, multiclass
    clus
vv   DEL PEAK 46(XQ21.33) MUTATED DEL PEAK 46(XQ21.33) WILD-TYPE
  N0                           10                             40
  N1                            6                             51
  N2                            2                             22
  N3                            2                             17
D72V7, multiclass
    clus
vv   DEL PEAK 46(XQ21.33) MUTATED DEL PEAK 46(XQ21.33) WILD-TYPE
  M0                           19                            113
  M1                            1                             17
  MX                            1                             10
D72V8, multiclass
     clus
vv    DEL PEAK 46(XQ21.33) MUTATED DEL PEAK 46(XQ21.33) WILD-TYPE
  I                              7                             18
  II                             5                             38
  III                            4                             44
  IV                             4                             25
D72V9, binary
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  DEL PEAK 46(XQ21.33) MUTATED     20    1
  DEL PEAK 46(XQ21.33) WILD-TYPE  136    4
     clus
vv    DEL PEAK 46(XQ21.33) MUTATED DEL PEAK 46(XQ21.33) WILD-TYPE
  NO                             1                              4
  YES                           20                            136
                                    V1.D 
                         "Time to Death" 
                                      V2 
                                   "AGE" 
                                      V3 
                                "GENDER" 
                                      V4 
                     "HISTOLOGICAL.TYPE" 
                                      V5 
                           "PATHOLOGY.T" 
                                      V6 
                           "PATHOLOGY.N" 
                                      V7 
                   "PATHOLOGICSPREAD(M)" 
                                      V8 
                           "TUMOR.STAGE" 
                                      V9 
"RADIATIONS.RADIATION.REGIMENINDICATION" 
> q(save="no")
