
R version 2.10.1 (2009-12-14)
Copyright (C) 2009 The R Foundation for Statistical Computing
ISBN 3-900051-07-0

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> source("/xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/Correlate_Clinical_Clusters_onlysig.36.3689/Clusters2ClinicalAnalysis_nozzle_onlysig.R")
> result <- main("/xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/Correlate_Clinical_Clusters_onlysig.36.3689/", "-nF=/xchip/tcga/Tools/Nozzle/v1.current", "-iD=/xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/303614/STAD-TP.mutsig.cluster.txt", "-iC=/xchip/cga/gdac-prod/tcga-gdac/jobResults/GDAC_clinicalDataPickerPipeline/STAD-TP/2332215/1.GDAC_clinicalDataPicker.Finished/STAD-TP.clin.merged.picked.txt", "-fF=ALL", "-fC=3", "-fH=5", "-fW=9", "-fP=OUT", "-cP=1", "-cQ=0.25", "-MF=ONLYSIG", "-oT=", "-nV=Nozzle.R1", "-OP=MUTSIG", "-iT=", "-iX=")
[1] "nver"          "-nV=Nozzle.R1"
[1] "nfn"                                 "/xchip/tcga/Tools/Nozzle/v1.current"
[1] "Nozzle.R1"
[1] "successfully load Nozzle.R1"
[1] "ofn"  "-oT="
[1] "opt"        "-OP=MUTSIG"
[1] "tl"   "-iT="
[1] "dx"   "-iX="
[1] "opt"    "MUTSIG"
[1] "dx" ""  

nPatients in clinical file=162, in cluster file=116, common to both=116
[1]  40 116
[1] "TP53 MUTATION ANALYSIS"
[1] 3
  TP53 MUTATED TP53 WILD-TYPE 
            52             64 
  TP53 MUTATED TP53 WILD-TYPE 
            52             64 
[1] "KRAS MUTATION ANALYSIS"
[1] 3
  KRAS MUTATED KRAS WILD-TYPE 
            14            102 
  KRAS MUTATED KRAS WILD-TYPE 
            14            102 
[1] "PIK3CA MUTATION ANALYSIS"
[1] 3
  PIK3CA MUTATED PIK3CA WILD-TYPE 
              24               92 
  PIK3CA MUTATED PIK3CA WILD-TYPE 
              24               92 
[1] "CBWD1 MUTATION ANALYSIS"
[1] 3
  CBWD1 MUTATED CBWD1 WILD-TYPE 
             14             102 
  CBWD1 MUTATED CBWD1 WILD-TYPE 
             14             102 
[1] "ARID1A MUTATION ANALYSIS"
[1] 3
  ARID1A MUTATED ARID1A WILD-TYPE 
              22               94 
  ARID1A MUTATED ARID1A WILD-TYPE 
              22               94 
[1] "PGM5 MUTATION ANALYSIS"
[1] 3
  PGM5 MUTATED PGM5 WILD-TYPE 
            16            100 
  PGM5 MUTATED PGM5 WILD-TYPE 
            16            100 
[1] "ACVR2A MUTATION ANALYSIS"
[1] 3
  ACVR2A MUTATED ACVR2A WILD-TYPE 
              13              103 
  ACVR2A MUTATED ACVR2A WILD-TYPE 
              13              103 
[1] "RPL22 MUTATION ANALYSIS"
[1] 3
  RPL22 MUTATED RPL22 WILD-TYPE 
              9             107 
  RPL22 MUTATED RPL22 WILD-TYPE 
              9             107 
[1] "OR8H3 MUTATION ANALYSIS"
[1] 3
  OR8H3 MUTATED OR8H3 WILD-TYPE 
             10             106 
  OR8H3 MUTATED OR8H3 WILD-TYPE 
             10             106 
[1] "RHOA MUTATION ANALYSIS"
[1] 3
  RHOA MUTATED RHOA WILD-TYPE 
             7            109 
  RHOA MUTATED RHOA WILD-TYPE 
             7            109 
[1] "TRIM48 MUTATION ANALYSIS"
[1] 3
  TRIM48 MUTATED TRIM48 WILD-TYPE 
              10              106 
  TRIM48 MUTATED TRIM48 WILD-TYPE 
              10              106 
[1] "ZNF804B MUTATION ANALYSIS"
[1] 3
  ZNF804B MUTATED ZNF804B WILD-TYPE 
               18                98 
  ZNF804B MUTATED ZNF804B WILD-TYPE 
               18                98 
[1] "EDNRB MUTATION ANALYSIS"
[1] 3
  EDNRB MUTATED EDNRB WILD-TYPE 
             12             104 
  EDNRB MUTATED EDNRB WILD-TYPE 
             12             104 
[1] "SPRYD5 MUTATION ANALYSIS"
[1] 3
  SPRYD5 MUTATED SPRYD5 WILD-TYPE 
               8              108 
  SPRYD5 MUTATED SPRYD5 WILD-TYPE 
               8              108 
[1] "PCDH15 MUTATION ANALYSIS"
[1] 3
  PCDH15 MUTATED PCDH15 WILD-TYPE 
              22               94 
  PCDH15 MUTATED PCDH15 WILD-TYPE 
              22               94 
[1] "HLA-B MUTATION ANALYSIS"
[1] 3
  HLA-B MUTATED HLA-B WILD-TYPE 
              9             107 
  HLA-B MUTATED HLA-B WILD-TYPE 
              9             107 
[1] "TUSC3 MUTATION ANALYSIS"
[1] 3
  TUSC3 MUTATED TUSC3 WILD-TYPE 
              9             107 
  TUSC3 MUTATED TUSC3 WILD-TYPE 
              9             107 
[1] "TPTE MUTATION ANALYSIS"
[1] 3
  TPTE MUTATED TPTE WILD-TYPE 
            14            102 
  TPTE MUTATED TPTE WILD-TYPE 
            14            102 
[1] "C17ORF63 MUTATION ANALYSIS"
[1] 3
  C17ORF63 MUTATED C17ORF63 WILD-TYPE 
                 3                113 
  C17ORF63 MUTATED C17ORF63 WILD-TYPE 
                 3                113 
[1] "SLITRK6 MUTATION ANALYSIS"
[1] 3
  SLITRK6 MUTATED SLITRK6 WILD-TYPE 
               10               106 
  SLITRK6 MUTATED SLITRK6 WILD-TYPE 
               10               106 
[1] "RNF43 MUTATION ANALYSIS"
[1] 3
  RNF43 MUTATED RNF43 WILD-TYPE 
             13             103 
  RNF43 MUTATED RNF43 WILD-TYPE 
             13             103 
[1] "TM7SF4 MUTATION ANALYSIS"
[1] 3
  TM7SF4 MUTATED TM7SF4 WILD-TYPE 
               7              109 
  TM7SF4 MUTATED TM7SF4 WILD-TYPE 
               7              109 
[1] "WBSCR17 MUTATION ANALYSIS"
[1] 3
  WBSCR17 MUTATED WBSCR17 WILD-TYPE 
               12               104 
  WBSCR17 MUTATED WBSCR17 WILD-TYPE 
               12               104 
[1] "OR4C16 MUTATION ANALYSIS"
[1] 3
  OR4C16 MUTATED OR4C16 WILD-TYPE 
               8              108 
  OR4C16 MUTATED OR4C16 WILD-TYPE 
               8              108 
[1] "SMAD4 MUTATION ANALYSIS"
[1] 3
  SMAD4 MUTATED SMAD4 WILD-TYPE 
              7             109 
  SMAD4 MUTATED SMAD4 WILD-TYPE 
              7             109 
[1] "ASTN2 MUTATION ANALYSIS"
[1] 3
  ASTN2 MUTATED ASTN2 WILD-TYPE 
             14             102 
  ASTN2 MUTATED ASTN2 WILD-TYPE 
             14             102 
[1] "OR4Q3 MUTATION ANALYSIS"
[1] 3
  OR4Q3 MUTATED OR4Q3 WILD-TYPE 
              6             110 
  OR4Q3 MUTATED OR4Q3 WILD-TYPE 
              6             110 
[1] "IAPP MUTATION ANALYSIS"
[1] 3
  IAPP MUTATED IAPP WILD-TYPE 
             4            112 
  IAPP MUTATED IAPP WILD-TYPE 
             4            112 
[1] "IRF2 MUTATION ANALYSIS"
[1] 3
  IRF2 MUTATED IRF2 WILD-TYPE 
             8            108 
  IRF2 MUTATED IRF2 WILD-TYPE 
             8            108 
[1] "CDH20 MUTATION ANALYSIS"
[1] 3
  CDH20 MUTATED CDH20 WILD-TYPE 
             14             102 
  CDH20 MUTATED CDH20 WILD-TYPE 
             14             102 
[1] "OR2T6 MUTATION ANALYSIS"
[1] 3
  OR2T6 MUTATED OR2T6 WILD-TYPE 
              6             110 
  OR2T6 MUTATED OR2T6 WILD-TYPE 
              6             110 
[1] "PARK2 MUTATION ANALYSIS"
[1] 3
  PARK2 MUTATED PARK2 WILD-TYPE 
              9             107 
  PARK2 MUTATED PARK2 WILD-TYPE 
              9             107 
[1] "PDZRN4 MUTATION ANALYSIS"
[1] 3
  PDZRN4 MUTATED PDZRN4 WILD-TYPE 
              11              105 
  PDZRN4 MUTATED PDZRN4 WILD-TYPE 
              11              105 
[1] "CYP7B1 MUTATION ANALYSIS"
[1] 3
  CYP7B1 MUTATED CYP7B1 WILD-TYPE 
               7              109 
  CYP7B1 MUTATED CYP7B1 WILD-TYPE 
               7              109 
[1] "CHRM2 MUTATION ANALYSIS"
[1] 3
  CHRM2 MUTATED CHRM2 WILD-TYPE 
              6             110 
  CHRM2 MUTATED CHRM2 WILD-TYPE 
              6             110 
[1] "KIAA0748 MUTATION ANALYSIS"
[1] 3
  KIAA0748 MUTATED KIAA0748 WILD-TYPE 
                 7                109 
  KIAA0748 MUTATED KIAA0748 WILD-TYPE 
                 7                109 
[1] "FMOD MUTATION ANALYSIS"
[1] 3
  FMOD MUTATED FMOD WILD-TYPE 
             8            108 
  FMOD MUTATED FMOD WILD-TYPE 
             8            108 
[1] "BMPR2 MUTATION ANALYSIS"
[1] 3
  BMPR2 MUTATED BMPR2 WILD-TYPE 
              9             107 
  BMPR2 MUTATED BMPR2 WILD-TYPE 
              9             107 
[1] "CNBD1 MUTATION ANALYSIS"
[1] 3
  CNBD1 MUTATED CNBD1 WILD-TYPE 
              5             111 
  CNBD1 MUTATED CNBD1 WILD-TYPE 
              5             111 
[1] "INO80E MUTATION ANALYSIS"
[1] 3
  INO80E MUTATED INO80E WILD-TYPE 
               5              111 
  INO80E MUTATED INO80E WILD-TYPE 
               5              111 
[1] "data2feature, selection=ALL"
 [1] "YEARSTOBIRTH"                          
 [2] "DAYSTODEATH"                           
 [3] "DAYSTOLASTFOLLOWUP"                    
 [4] "VITALSTATUS"                           
 [5] "DCCUPLOADDATE"                         
 [6] "PRIMARYSITEOFDESEASE"                  
 [7] "GENDER"                                
 [8] "DATEOFINITIALPATHOLOGICDIAGNOSIS"      
 [9] "HISTOLOGICALTYPE"                      
[10] "PATHOLOGICSPREAD(PT)"                  
[11] "PATHOLOGICSPREAD(PN)"                  
[12] "PATHOLOGICSPREAD(M)"                   
[13] "TUMORSTAGE"                            
[14] "RADIATIONS.RADIATION.REGIMENINDICATION"
[15] "BATCHNUMBER"                           

Input Data has 15 rows and 116 columns.

[1] "Batch" "15"   
[1] "Last Follow UP"
TCGA-B7-5816 TCGA-B7-5818 TCGA-BR-4183 TCGA-BR-4184 TCGA-BR-4187 TCGA-BR-4188 
         171            3           NA           NA           NA           NA 
TCGA-BR-4191 TCGA-BR-4201 TCGA-BR-4253 TCGA-BR-4255 TCGA-BR-4256 TCGA-BR-4257 
          NA           NA           NA           NA           NA           NA 
TCGA-BR-4267 TCGA-BR-4279 TCGA-BR-4280 TCGA-BR-4292 TCGA-BR-4294 TCGA-BR-4357 
          NA           NA           NA           NA           NA           NA 
TCGA-BR-4361 TCGA-BR-4362 TCGA-BR-4363 TCGA-BR-4366 TCGA-BR-4367 TCGA-BR-4368 
          NA           NA           NA           NA           NA           NA 
TCGA-BR-4369 TCGA-BR-4370 TCGA-BR-4371 TCGA-BR-6452 TCGA-BR-6453 TCGA-BR-6454 
          NA           NA           NA           29           NA           NA 
TCGA-BR-6455 TCGA-BR-6456 TCGA-BR-6457 TCGA-BR-6458 TCGA-BR-6564 TCGA-BR-6565 
          43           NA           41           41           25           19 
TCGA-BR-6566 TCGA-BR-6705 TCGA-BR-6706 TCGA-BR-6707 TCGA-BR-6709 TCGA-BR-6710 
          19           52           66           30           37           20 
TCGA-BR-6801 TCGA-BR-6802 TCGA-BR-6803 TCGA-BR-6852 TCGA-CD-5798 TCGA-CD-5799 
          34           23           20            8           25           21 
TCGA-CD-5800 TCGA-CD-5801 TCGA-CD-5802 TCGA-CD-5803 TCGA-CD-5813 TCGA-CG-4300 
          11           15            9            2           12          609 
TCGA-CG-4301 TCGA-CG-4304 TCGA-CG-4305 TCGA-CG-4306 TCGA-CG-4436 TCGA-CG-4437 
          92          822          485           31         1611          245 
TCGA-CG-4438 TCGA-CG-4440 TCGA-CG-4441 TCGA-CG-4442 TCGA-CG-4443 TCGA-CG-4444 
        1644          122          426           NA          912         1431 
TCGA-CG-4449 TCGA-CG-4455 TCGA-CG-4460 TCGA-CG-4462 TCGA-CG-4465 TCGA-CG-4466 
         580          366          669           31          273          576 
TCGA-CG-4469 TCGA-CG-4472 TCGA-CG-4474 TCGA-CG-4475 TCGA-CG-4476 TCGA-CG-4477 
         215          365           31           NA           NA           31 
TCGA-CG-5716 TCGA-CG-5717 TCGA-CG-5718 TCGA-CG-5719 TCGA-CG-5720 TCGA-CG-5721 
          31          211           31           31           30          182 
TCGA-CG-5722 TCGA-CG-5723 TCGA-CG-5724 TCGA-CG-5725 TCGA-CG-5726 TCGA-CG-5727 
          29         2131          366          457          881          944 
TCGA-CG-5728 TCGA-CG-5730 TCGA-CG-5732 TCGA-CG-5733 TCGA-CG-5734 TCGA-D7-5577 
        1980          122         1674          641          243          263 
TCGA-D7-5578 TCGA-D7-5579 TCGA-D7-6518 TCGA-D7-6519 TCGA-D7-6520 TCGA-D7-6521 
         109          138          298          476          293          249 
TCGA-D7-6522 TCGA-D7-6524 TCGA-D7-6525 TCGA-D7-6526 TCGA-D7-6527 TCGA-D7-6528 
         210           21          181          201          126           51 
TCGA-D7-6815 TCGA-D7-6817 TCGA-D7-6818 TCGA-D7-6820 TCGA-D7-6822 TCGA-EQ-5647 
         111          143          123           89          130           19 
TCGA-F1-6177 TCGA-F1-6874 
         199           61 
Variable 1:'AGE':	nDistinctValues=42,	numeric=TRUE,	binary=FALSE,	exclude=FALSE.
Variable 2:'DAYSTODEATH':	nDistinctValues=14,	numeric=TRUE,	binary=FALSE,	exclude=TRUE.
Variable 3:'DAYSTOLASTFOLLOWUP':	nDistinctValues=70,	numeric=TRUE,	binary=FALSE,	exclude=TRUE.
Variable 4:'VITALSTATUS':	nDistinctValues=2,	numeric=TRUE,	binary=TRUE,	exclude=FALSE.
Variable 5:'DCCUPLOADDAY':	nDistinctValues=3,	numeric=FALSE,	binary=FALSE,	exclude=TRUE.
Variable 6:'PRIMARY.SITE.OF.DISEASE':	nDistinctValues=1,	numeric=FALSE,	binary=FALSE,	exclude=TRUE.
Variable 7:'GENDER':	nDistinctValues=2,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 8:'DAYOFINITIALPATHOLOGICDIAGNOSIS':	nDistinctValues=9,	numeric=TRUE,	binary=FALSE,	exclude=TRUE.
Variable 9:'HISTOLOGICAL.TYPE':	nDistinctValues=6,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 10:'PATHOLOGY.T':	nDistinctValues=10,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 11:'PATHOLOGY.N':	nDistinctValues=6,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 12:'PATHOLOGICSPREAD(M)':	nDistinctValues=3,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 13:'TUMOR.STAGE':	nDistinctValues=11,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 14:'RADIATIONS.RADIATION.REGIMENINDICATION':	nDistinctValues=2,	numeric=FALSE,	binary=FALSE,	exclude=TRUE.
Variable 15:'BATCH.NUMBER':	nDistinctValues=5,	numeric=FALSE,	binary=FALSE,	exclude=TRUE.
[1] "rownames(nsurv.mat)"
[1] "AGE"                 "GENDER"              "HISTOLOGICAL.TYPE"  
[4] "PATHOLOGY.T"         "PATHOLOGY.N"         "PATHOLOGICSPREAD(M)"
[7] "TUMOR.STAGE"        
[1] "TUMOR.?STAGE" "7"           
[1] "stage2"
vv
 1  2  3  4 
18 32 29 21 
[1] "TUMOR.?GRADE"
[1] "PATHOLOGY.T" "4"          
[1] "PATHOLOGY.N" "5"          
Output Data has 116 columns, 1 survival variables, and 7 non-survival variables.
AGE, nv=42, binary=FALSE, numeric=TRUE
GENDER, nv=2, binary=FALSE, numeric=FALSE
HISTOLOGICAL.TYPE, nv=6, binary=FALSE, numeric=FALSE
PATHOLOGY.T, nv=4, binary=FALSE, numeric=TRUE
[1] "grepl('PATHOLOGY.T',vnm)"
vv
T1 T2 T3 T4 
 4 46 41 15 
[1] "table(vv)"
vv
T1 T2 T3 T4 
 4 46 41 15 
$ClinVariableName
[1] "PATHOLOGY.T"

$Table
vv
T1 T2 T3 T4 
 4 46 41 15 

$nClasses
[1] 4

$ClinVariableType
[1] "multiclass(4)"


T1 T2 T3 T4 
 4 46 41 15 
PATHOLOGY.N, nv=4, binary=FALSE, numeric=TRUE
[1] "grepl('PATHOLOGY.N',vnm)"
vv
N0 N1 N2 N3 
35 39 19 12 
[1] "table(vv)"
vv
N0 N1 N2 N3 
35 39 19 12 
$ClinVariableName
[1] "PATHOLOGY.N"

$Table
vv
N0 N1 N2 N3 
35 39 19 12 

$nClasses
[1] 4

$ClinVariableType
[1] "multiclass(4)"


N0 N1 N2 N3 
35 39 19 12 
PATHOLOGICSPREAD(M), nv=3, binary=FALSE, numeric=FALSE
TUMOR.STAGE, nv=4, binary=FALSE, numeric=TRUE
[1] "grepl('TUMOR.?STAGE',vnm)"
vv
  I  II III  IV 
 18  32  29  21 
[1] "table(vv)"
vv
  I  II III  IV 
 18  32  29  21 
$ClinVariableName
[1] "TUMOR.STAGE"

$Table
vv
  I  II III  IV 
 18  32  29  21 

$nClasses
[1] 4

$ClinVariableType
[1] "multiclass(4)"


  I  II III  IV 
 18  32  29  21 

Clustering(1) Variable = TP53 MUTATION ANALYSIS
D1V1, survival
                sevent
clus2             0  1
  TP53 MUTATED   36  5
  TP53 WILD-TYPE 35  9
  TP53 MUTATED TP53 WILD-TYPE 
            41             44 
  TP53 MUTATED TP53 WILD-TYPE 
             5              9 
$`TP53 MUTATED`
TCGA-B7-5818 TCGA-BR-6457 TCGA-BR-6458 TCGA-BR-6565 TCGA-BR-6803 TCGA-BR-6852 
        0.10         1.35         1.35         0.62         0.66         0.26 
TCGA-CD-5799 TCGA-CD-5800 TCGA-CD-5813 TCGA-CG-4300 TCGA-CG-4436 TCGA-CG-4438 
        0.69         0.36         0.39        20.02        52.96        54.05 
TCGA-CG-4440 TCGA-CG-4444 TCGA-CG-4449 TCGA-CG-4460 TCGA-CG-4466 TCGA-CG-4469 
        4.01        47.05        19.07        21.99        18.94         7.07 
TCGA-CG-4472 TCGA-CG-5717 TCGA-CG-5718 TCGA-CG-5721 TCGA-CG-5723 TCGA-CG-5726 
       12.00         6.94         1.02         5.98        70.06        28.96 
TCGA-CG-5727 TCGA-CG-5730 TCGA-CG-5732 TCGA-D7-5578 TCGA-D7-6518 TCGA-D7-6520 
       31.04         4.01        55.04         3.58         9.80         9.63 
TCGA-D7-6521 TCGA-D7-6525 TCGA-D7-6526 TCGA-D7-6527 TCGA-D7-6528 TCGA-D7-6815 
        8.19         5.95         6.61         4.14         1.68         3.65 
TCGA-D7-6817 TCGA-D7-6818 TCGA-D7-6820 TCGA-D7-6822 TCGA-F1-6874 
        4.70         4.04         2.93         4.27         2.01 

$`TP53 WILD-TYPE`
TCGA-B7-5816 TCGA-BR-6452 TCGA-BR-6455 TCGA-BR-6564 TCGA-BR-6566 TCGA-BR-6705 
        5.62         0.95         1.41         0.82         0.62         1.71 
TCGA-BR-6706 TCGA-BR-6707 TCGA-BR-6709 TCGA-BR-6710 TCGA-BR-6801 TCGA-BR-6802 
        2.17         0.99         1.22         0.66         1.12         0.76 
TCGA-CD-5798 TCGA-CD-5801 TCGA-CD-5802 TCGA-CD-5803 TCGA-CG-4301 TCGA-CG-4304 
        0.82         0.49         0.30         0.07         3.02        27.02 
TCGA-CG-4305 TCGA-CG-4306 TCGA-CG-4437 TCGA-CG-4441 TCGA-CG-4443 TCGA-CG-4455 
       15.95         1.02         8.05        14.01        29.98        12.03 
TCGA-CG-4462 TCGA-CG-4465 TCGA-CG-4474 TCGA-CG-4477 TCGA-CG-5716 TCGA-CG-5719 
        1.02         8.98         1.02         1.02         1.02         1.02 
TCGA-CG-5720 TCGA-CG-5722 TCGA-CG-5724 TCGA-CG-5725 TCGA-CG-5728 TCGA-CG-5733 
        0.99         0.95        12.03        15.02        65.10        21.07 
TCGA-CG-5734 TCGA-D7-5577 TCGA-D7-5579 TCGA-D7-6519 TCGA-D7-6522 TCGA-D7-6524 
        7.99         8.65         4.54        15.65         6.90         0.69 
TCGA-EQ-5647 TCGA-F1-6177 
        0.62         6.54 

  TP53 MUTATED TP53 WILD-TYPE 
          0.10           0.07 
  TP53 MUTATED TP53 WILD-TYPE 
         70.06          65.10 
  TP53 MUTATED TP53 WILD-TYPE 
         4.700          1.315 
[1] "0.1 - 70.1 (4.7)" "0.1 - 65.1 (1.3)"
    TCGA-B7-5816     TCGA-B7-5818     TCGA-BR-6452     TCGA-BR-6455 
"TP53 WILD-TYPE"   "TP53 MUTATED" "TP53 WILD-TYPE" "TP53 WILD-TYPE" 
    TCGA-BR-6457     TCGA-BR-6458     TCGA-BR-6564     TCGA-BR-6565 
  "TP53 MUTATED"   "TP53 MUTATED" "TP53 WILD-TYPE"   "TP53 MUTATED" 
    TCGA-BR-6566     TCGA-BR-6705     TCGA-BR-6706     TCGA-BR-6707 
"TP53 WILD-TYPE" "TP53 WILD-TYPE" "TP53 WILD-TYPE" "TP53 WILD-TYPE" 
    TCGA-BR-6709     TCGA-BR-6710     TCGA-BR-6801     TCGA-BR-6802 
"TP53 WILD-TYPE" "TP53 WILD-TYPE" "TP53 WILD-TYPE" "TP53 WILD-TYPE" 
    TCGA-BR-6803     TCGA-BR-6852     TCGA-CD-5798     TCGA-CD-5799 
  "TP53 MUTATED"   "TP53 MUTATED" "TP53 WILD-TYPE"   "TP53 MUTATED" 
    TCGA-CD-5800     TCGA-CD-5801     TCGA-CD-5802     TCGA-CD-5803 
  "TP53 MUTATED" "TP53 WILD-TYPE" "TP53 WILD-TYPE" "TP53 WILD-TYPE" 
    TCGA-CD-5813     TCGA-CG-4300     TCGA-CG-4301     TCGA-CG-4304 
  "TP53 MUTATED"   "TP53 MUTATED" "TP53 WILD-TYPE" "TP53 WILD-TYPE" 
    TCGA-CG-4305     TCGA-CG-4306     TCGA-CG-4436     TCGA-CG-4437 
"TP53 WILD-TYPE" "TP53 WILD-TYPE"   "TP53 MUTATED" "TP53 WILD-TYPE" 
    TCGA-CG-4438     TCGA-CG-4440     TCGA-CG-4441     TCGA-CG-4443 
  "TP53 MUTATED"   "TP53 MUTATED" "TP53 WILD-TYPE" "TP53 WILD-TYPE" 
    TCGA-CG-4444     TCGA-CG-4449     TCGA-CG-4455     TCGA-CG-4460 
  "TP53 MUTATED"   "TP53 MUTATED" "TP53 WILD-TYPE"   "TP53 MUTATED" 
    TCGA-CG-4462     TCGA-CG-4465     TCGA-CG-4466     TCGA-CG-4469 
"TP53 WILD-TYPE" "TP53 WILD-TYPE"   "TP53 MUTATED"   "TP53 MUTATED" 
    TCGA-CG-4472     TCGA-CG-4474     TCGA-CG-4477     TCGA-CG-5716 
  "TP53 MUTATED" "TP53 WILD-TYPE" "TP53 WILD-TYPE" "TP53 WILD-TYPE" 
    TCGA-CG-5717     TCGA-CG-5718     TCGA-CG-5719     TCGA-CG-5720 
  "TP53 MUTATED"   "TP53 MUTATED" "TP53 WILD-TYPE" "TP53 WILD-TYPE" 
    TCGA-CG-5721     TCGA-CG-5722     TCGA-CG-5723     TCGA-CG-5724 
  "TP53 MUTATED" "TP53 WILD-TYPE"   "TP53 MUTATED" "TP53 WILD-TYPE" 
    TCGA-CG-5725     TCGA-CG-5726     TCGA-CG-5727     TCGA-CG-5728 
"TP53 WILD-TYPE"   "TP53 MUTATED"   "TP53 MUTATED" "TP53 WILD-TYPE" 
    TCGA-CG-5730     TCGA-CG-5732     TCGA-CG-5733     TCGA-CG-5734 
  "TP53 MUTATED"   "TP53 MUTATED" "TP53 WILD-TYPE" "TP53 WILD-TYPE" 
    TCGA-D7-5577     TCGA-D7-5578     TCGA-D7-5579     TCGA-D7-6518 
"TP53 WILD-TYPE"   "TP53 MUTATED" "TP53 WILD-TYPE"   "TP53 MUTATED" 
    TCGA-D7-6519     TCGA-D7-6520     TCGA-D7-6521     TCGA-D7-6522 
"TP53 WILD-TYPE"   "TP53 MUTATED"   "TP53 MUTATED" "TP53 WILD-TYPE" 
    TCGA-D7-6524     TCGA-D7-6525     TCGA-D7-6526     TCGA-D7-6527 
"TP53 WILD-TYPE"   "TP53 MUTATED"   "TP53 MUTATED"   "TP53 MUTATED" 
    TCGA-D7-6528     TCGA-D7-6815     TCGA-D7-6817     TCGA-D7-6818 
  "TP53 MUTATED"   "TP53 MUTATED"   "TP53 MUTATED"   "TP53 MUTATED" 
    TCGA-D7-6820     TCGA-D7-6822     TCGA-EQ-5647     TCGA-F1-6177 
  "TP53 MUTATED"   "TP53 MUTATED" "TP53 WILD-TYPE" "TP53 WILD-TYPE" 
    TCGA-F1-6874 
  "TP53 MUTATED" 
    TCGA-B7-5816     TCGA-B7-5818     TCGA-BR-6452     TCGA-BR-6455 
"TP53 WILD-TYPE"   "TP53 MUTATED" "TP53 WILD-TYPE" "TP53 WILD-TYPE" 
    TCGA-BR-6457     TCGA-BR-6458     TCGA-BR-6564     TCGA-BR-6565 
  "TP53 MUTATED"   "TP53 MUTATED" "TP53 WILD-TYPE"   "TP53 MUTATED" 
    TCGA-BR-6566     TCGA-BR-6705     TCGA-BR-6706     TCGA-BR-6707 
"TP53 WILD-TYPE" "TP53 WILD-TYPE" "TP53 WILD-TYPE" "TP53 WILD-TYPE" 
    TCGA-BR-6709     TCGA-BR-6710     TCGA-BR-6801     TCGA-BR-6802 
"TP53 WILD-TYPE" "TP53 WILD-TYPE" "TP53 WILD-TYPE" "TP53 WILD-TYPE" 
    TCGA-BR-6803     TCGA-BR-6852     TCGA-CD-5798     TCGA-CD-5799 
  "TP53 MUTATED"   "TP53 MUTATED" "TP53 WILD-TYPE"   "TP53 MUTATED" 
    TCGA-CD-5800     TCGA-CD-5801     TCGA-CD-5802     TCGA-CD-5803 
  "TP53 MUTATED" "TP53 WILD-TYPE" "TP53 WILD-TYPE" "TP53 WILD-TYPE" 
    TCGA-CD-5813     TCGA-CG-4300     TCGA-CG-4301     TCGA-CG-4304 
  "TP53 MUTATED"   "TP53 MUTATED" "TP53 WILD-TYPE" "TP53 WILD-TYPE" 
    TCGA-CG-4305     TCGA-CG-4306     TCGA-CG-4436     TCGA-CG-4437 
"TP53 WILD-TYPE" "TP53 WILD-TYPE"   "TP53 MUTATED" "TP53 WILD-TYPE" 
    TCGA-CG-4438     TCGA-CG-4440     TCGA-CG-4441     TCGA-CG-4443 
  "TP53 MUTATED"   "TP53 MUTATED" "TP53 WILD-TYPE" "TP53 WILD-TYPE" 
    TCGA-CG-4444     TCGA-CG-4449     TCGA-CG-4455     TCGA-CG-4460 
  "TP53 MUTATED"   "TP53 MUTATED" "TP53 WILD-TYPE"   "TP53 MUTATED" 
    TCGA-CG-4462     TCGA-CG-4465     TCGA-CG-4466     TCGA-CG-4469 
"TP53 WILD-TYPE" "TP53 WILD-TYPE"   "TP53 MUTATED"   "TP53 MUTATED" 
    TCGA-CG-4472     TCGA-CG-4474     TCGA-CG-4477     TCGA-CG-5716 
  "TP53 MUTATED" "TP53 WILD-TYPE" "TP53 WILD-TYPE" "TP53 WILD-TYPE" 
    TCGA-CG-5717     TCGA-CG-5718     TCGA-CG-5719     TCGA-CG-5720 
  "TP53 MUTATED"   "TP53 MUTATED" "TP53 WILD-TYPE" "TP53 WILD-TYPE" 
    TCGA-CG-5721     TCGA-CG-5722     TCGA-CG-5723     TCGA-CG-5724 
  "TP53 MUTATED" "TP53 WILD-TYPE"   "TP53 MUTATED" "TP53 WILD-TYPE" 
    TCGA-CG-5725     TCGA-CG-5726     TCGA-CG-5727     TCGA-CG-5728 
"TP53 WILD-TYPE"   "TP53 MUTATED"   "TP53 MUTATED" "TP53 WILD-TYPE" 
    TCGA-CG-5730     TCGA-CG-5732     TCGA-CG-5733     TCGA-CG-5734 
  "TP53 MUTATED"   "TP53 MUTATED" "TP53 WILD-TYPE" "TP53 WILD-TYPE" 
    TCGA-D7-5577     TCGA-D7-5578     TCGA-D7-5579     TCGA-D7-6518 
"TP53 WILD-TYPE"   "TP53 MUTATED" "TP53 WILD-TYPE"   "TP53 MUTATED" 
    TCGA-D7-6519     TCGA-D7-6520     TCGA-D7-6521     TCGA-D7-6522 
"TP53 WILD-TYPE"   "TP53 MUTATED"   "TP53 MUTATED" "TP53 WILD-TYPE" 
    TCGA-D7-6524     TCGA-D7-6525     TCGA-D7-6526     TCGA-D7-6527 
"TP53 WILD-TYPE"   "TP53 MUTATED"   "TP53 MUTATED"   "TP53 MUTATED" 
    TCGA-D7-6528     TCGA-D7-6815     TCGA-D7-6817     TCGA-D7-6818 
  "TP53 MUTATED"   "TP53 MUTATED"   "TP53 MUTATED"   "TP53 MUTATED" 
    TCGA-D7-6820     TCGA-D7-6822     TCGA-EQ-5647     TCGA-F1-6177 
  "TP53 MUTATED"   "TP53 MUTATED" "TP53 WILD-TYPE" "TP53 WILD-TYPE" 
    TCGA-F1-6874 
  "TP53 MUTATED" 
    TCGA-B7-5816     TCGA-B7-5818     TCGA-BR-6452     TCGA-BR-6455 
"TP53 WILD-TYPE"   "TP53 MUTATED" "TP53 WILD-TYPE" "TP53 WILD-TYPE" 
    TCGA-BR-6457     TCGA-BR-6458     TCGA-BR-6564     TCGA-BR-6565 
  "TP53 MUTATED"   "TP53 MUTATED" "TP53 WILD-TYPE"   "TP53 MUTATED" 
    TCGA-BR-6566     TCGA-BR-6705     TCGA-BR-6706     TCGA-BR-6707 
"TP53 WILD-TYPE" "TP53 WILD-TYPE" "TP53 WILD-TYPE" "TP53 WILD-TYPE" 
    TCGA-BR-6709     TCGA-BR-6710     TCGA-BR-6801     TCGA-BR-6802 
"TP53 WILD-TYPE" "TP53 WILD-TYPE" "TP53 WILD-TYPE" "TP53 WILD-TYPE" 
    TCGA-BR-6803     TCGA-BR-6852     TCGA-CD-5798     TCGA-CD-5799 
  "TP53 MUTATED"   "TP53 MUTATED" "TP53 WILD-TYPE"   "TP53 MUTATED" 
    TCGA-CD-5800     TCGA-CD-5801     TCGA-CD-5802     TCGA-CD-5803 
  "TP53 MUTATED" "TP53 WILD-TYPE" "TP53 WILD-TYPE" "TP53 WILD-TYPE" 
    TCGA-CD-5813     TCGA-CG-4300     TCGA-CG-4301     TCGA-CG-4304 
  "TP53 MUTATED"   "TP53 MUTATED" "TP53 WILD-TYPE" "TP53 WILD-TYPE" 
    TCGA-CG-4305     TCGA-CG-4306     TCGA-CG-4436     TCGA-CG-4437 
"TP53 WILD-TYPE" "TP53 WILD-TYPE"   "TP53 MUTATED" "TP53 WILD-TYPE" 
    TCGA-CG-4438     TCGA-CG-4440     TCGA-CG-4441     TCGA-CG-4443 
  "TP53 MUTATED"   "TP53 MUTATED" "TP53 WILD-TYPE" "TP53 WILD-TYPE" 
    TCGA-CG-4444     TCGA-CG-4449     TCGA-CG-4455     TCGA-CG-4460 
  "TP53 MUTATED"   "TP53 MUTATED" "TP53 WILD-TYPE"   "TP53 MUTATED" 
    TCGA-CG-4462     TCGA-CG-4465     TCGA-CG-4466     TCGA-CG-4469 
"TP53 WILD-TYPE" "TP53 WILD-TYPE"   "TP53 MUTATED"   "TP53 MUTATED" 
    TCGA-CG-4472     TCGA-CG-4474     TCGA-CG-4477     TCGA-CG-5716 
  "TP53 MUTATED" "TP53 WILD-TYPE" "TP53 WILD-TYPE" "TP53 WILD-TYPE" 
    TCGA-CG-5717     TCGA-CG-5718     TCGA-CG-5719     TCGA-CG-5720 
  "TP53 MUTATED"   "TP53 MUTATED" "TP53 WILD-TYPE" "TP53 WILD-TYPE" 
    TCGA-CG-5721     TCGA-CG-5722     TCGA-CG-5723     TCGA-CG-5724 
  "TP53 MUTATED" "TP53 WILD-TYPE"   "TP53 MUTATED" "TP53 WILD-TYPE" 
    TCGA-CG-5725     TCGA-CG-5726     TCGA-CG-5727     TCGA-CG-5728 
"TP53 WILD-TYPE"   "TP53 MUTATED"   "TP53 MUTATED" "TP53 WILD-TYPE" 
    TCGA-CG-5730     TCGA-CG-5732     TCGA-CG-5733     TCGA-CG-5734 
  "TP53 MUTATED"   "TP53 MUTATED" "TP53 WILD-TYPE" "TP53 WILD-TYPE" 
    TCGA-D7-5577     TCGA-D7-5578     TCGA-D7-5579     TCGA-D7-6518 
"TP53 WILD-TYPE"   "TP53 MUTATED" "TP53 WILD-TYPE"   "TP53 MUTATED" 
    TCGA-D7-6519     TCGA-D7-6520     TCGA-D7-6521     TCGA-D7-6522 
"TP53 WILD-TYPE"   "TP53 MUTATED"   "TP53 MUTATED" "TP53 WILD-TYPE" 
    TCGA-D7-6524     TCGA-D7-6525     TCGA-D7-6526     TCGA-D7-6527 
"TP53 WILD-TYPE"   "TP53 MUTATED"   "TP53 MUTATED"   "TP53 MUTATED" 
    TCGA-D7-6528     TCGA-D7-6815     TCGA-D7-6817     TCGA-D7-6818 
  "TP53 MUTATED"   "TP53 MUTATED"   "TP53 MUTATED"   "TP53 MUTATED" 
    TCGA-D7-6820     TCGA-D7-6822     TCGA-EQ-5647     TCGA-F1-6177 
  "TP53 MUTATED"   "TP53 MUTATED" "TP53 WILD-TYPE" "TP53 WILD-TYPE" 
    TCGA-F1-6874 
  "TP53 MUTATED" 
[1] "hr=" "2.6"
D1V2, continuous
D1V3, binary
[1] "tbl2"
                cls
clus             [,1] [,2]
  TP53 MUTATED     18   34
  TP53 WILD-TYPE   28   36
        clus
vv       TP53 MUTATED TP53 WILD-TYPE
  FEMALE           18             28
  MALE             34             36
D1V4, multiclass
D1V5, multiclass
    clus
vv   TP53 MUTATED TP53 WILD-TYPE
  T1            2              2
  T2           23             23
  T3           19             22
  T4            5             10
D1V6, multiclass
    clus
vv   TP53 MUTATED TP53 WILD-TYPE
  N0           15             20
  N1           18             21
  N2            9             10
  N3            6              6
D1V7, multiclass
    clus
vv   TP53 MUTATED TP53 WILD-TYPE
  M0           46             53
  M1            3             10
  MX            3              1
D1V8, multiclass
     clus
vv    TP53 MUTATED TP53 WILD-TYPE
  I              7             11
  II            17             15
  III           12             17
  IV            10             11

Clustering(2) Variable = KRAS MUTATION ANALYSIS
D2V1, survival
                sevent
clus2             0  1
  KRAS MUTATED    6  0
  KRAS WILD-TYPE 65 14
  KRAS MUTATED KRAS WILD-TYPE 
             6             79 
  KRAS MUTATED KRAS WILD-TYPE 
             0             14 
$`KRAS MUTATED`
TCGA-BR-6705 TCGA-BR-6802 TCGA-CD-5798 TCGA-CG-5719 TCGA-CG-5727 TCGA-D7-6815 
        1.71         0.76         0.82         1.02        31.04         3.65 

$`KRAS WILD-TYPE`
TCGA-B7-5816 TCGA-B7-5818 TCGA-BR-6452 TCGA-BR-6455 TCGA-BR-6457 TCGA-BR-6458 
        5.62         0.10         0.95         1.41         1.35         1.35 
TCGA-BR-6564 TCGA-BR-6565 TCGA-BR-6566 TCGA-BR-6706 TCGA-BR-6707 TCGA-BR-6709 
        0.82         0.62         0.62         2.17         0.99         1.22 
TCGA-BR-6710 TCGA-BR-6801 TCGA-BR-6803 TCGA-BR-6852 TCGA-CD-5799 TCGA-CD-5800 
        0.66         1.12         0.66         0.26         0.69         0.36 
TCGA-CD-5801 TCGA-CD-5802 TCGA-CD-5803 TCGA-CD-5813 TCGA-CG-4300 TCGA-CG-4301 
        0.49         0.30         0.07         0.39        20.02         3.02 
TCGA-CG-4304 TCGA-CG-4305 TCGA-CG-4306 TCGA-CG-4436 TCGA-CG-4437 TCGA-CG-4438 
       27.02        15.95         1.02        52.96         8.05        54.05 
TCGA-CG-4440 TCGA-CG-4441 TCGA-CG-4443 TCGA-CG-4444 TCGA-CG-4449 TCGA-CG-4455 
        4.01        14.01        29.98        47.05        19.07        12.03 
TCGA-CG-4460 TCGA-CG-4462 TCGA-CG-4465 TCGA-CG-4466 TCGA-CG-4469 TCGA-CG-4472 
       21.99         1.02         8.98        18.94         7.07        12.00 
TCGA-CG-4474 TCGA-CG-4477 TCGA-CG-5716 TCGA-CG-5717 TCGA-CG-5718 TCGA-CG-5720 
        1.02         1.02         1.02         6.94         1.02         0.99 
TCGA-CG-5721 TCGA-CG-5722 TCGA-CG-5723 TCGA-CG-5724 TCGA-CG-5725 TCGA-CG-5726 
        5.98         0.95        70.06        12.03        15.02        28.96 
TCGA-CG-5728 TCGA-CG-5730 TCGA-CG-5732 TCGA-CG-5733 TCGA-CG-5734 TCGA-D7-5577 
       65.10         4.01        55.04        21.07         7.99         8.65 
TCGA-D7-5578 TCGA-D7-5579 TCGA-D7-6518 TCGA-D7-6519 TCGA-D7-6520 TCGA-D7-6521 
        3.58         4.54         9.80        15.65         9.63         8.19 
TCGA-D7-6522 TCGA-D7-6524 TCGA-D7-6525 TCGA-D7-6526 TCGA-D7-6527 TCGA-D7-6528 
        6.90         0.69         5.95         6.61         4.14         1.68 
TCGA-D7-6817 TCGA-D7-6818 TCGA-D7-6820 TCGA-D7-6822 TCGA-EQ-5647 TCGA-F1-6177 
        4.70         4.04         2.93         4.27         0.62         6.54 
TCGA-F1-6874 
        2.01 

  KRAS MUTATED KRAS WILD-TYPE 
          0.76           0.07 
  KRAS MUTATED KRAS WILD-TYPE 
         31.04          70.06 
  KRAS MUTATED KRAS WILD-TYPE 
         1.365          4.140 
[1] "0.8 - 31.0 (1.4)" "0.1 - 70.1 (4.1)"
    TCGA-B7-5816     TCGA-B7-5818     TCGA-BR-6452     TCGA-BR-6455 
"KRAS WILD-TYPE" "KRAS WILD-TYPE" "KRAS WILD-TYPE" "KRAS WILD-TYPE" 
    TCGA-BR-6457     TCGA-BR-6458     TCGA-BR-6564     TCGA-BR-6565 
"KRAS WILD-TYPE" "KRAS WILD-TYPE" "KRAS WILD-TYPE" "KRAS WILD-TYPE" 
    TCGA-BR-6566     TCGA-BR-6705     TCGA-BR-6706     TCGA-BR-6707 
"KRAS WILD-TYPE"   "KRAS MUTATED" "KRAS WILD-TYPE" "KRAS WILD-TYPE" 
    TCGA-BR-6709     TCGA-BR-6710     TCGA-BR-6801     TCGA-BR-6802 
"KRAS WILD-TYPE" "KRAS WILD-TYPE" "KRAS WILD-TYPE"   "KRAS MUTATED" 
    TCGA-BR-6803     TCGA-BR-6852     TCGA-CD-5798     TCGA-CD-5799 
"KRAS WILD-TYPE" "KRAS WILD-TYPE"   "KRAS MUTATED" "KRAS WILD-TYPE" 
    TCGA-CD-5800     TCGA-CD-5801     TCGA-CD-5802     TCGA-CD-5803 
"KRAS WILD-TYPE" "KRAS WILD-TYPE" "KRAS WILD-TYPE" "KRAS WILD-TYPE" 
    TCGA-CD-5813     TCGA-CG-4300     TCGA-CG-4301     TCGA-CG-4304 
"KRAS WILD-TYPE" "KRAS WILD-TYPE" "KRAS WILD-TYPE" "KRAS WILD-TYPE" 
    TCGA-CG-4305     TCGA-CG-4306     TCGA-CG-4436     TCGA-CG-4437 
"KRAS WILD-TYPE" "KRAS WILD-TYPE" "KRAS WILD-TYPE" "KRAS WILD-TYPE" 
    TCGA-CG-4438     TCGA-CG-4440     TCGA-CG-4441     TCGA-CG-4443 
"KRAS WILD-TYPE" "KRAS WILD-TYPE" "KRAS WILD-TYPE" "KRAS WILD-TYPE" 
    TCGA-CG-4444     TCGA-CG-4449     TCGA-CG-4455     TCGA-CG-4460 
"KRAS WILD-TYPE" "KRAS WILD-TYPE" "KRAS WILD-TYPE" "KRAS WILD-TYPE" 
    TCGA-CG-4462     TCGA-CG-4465     TCGA-CG-4466     TCGA-CG-4469 
"KRAS WILD-TYPE" "KRAS WILD-TYPE" "KRAS WILD-TYPE" "KRAS WILD-TYPE" 
    TCGA-CG-4472     TCGA-CG-4474     TCGA-CG-4477     TCGA-CG-5716 
"KRAS WILD-TYPE" "KRAS WILD-TYPE" "KRAS WILD-TYPE" "KRAS WILD-TYPE" 
    TCGA-CG-5717     TCGA-CG-5718     TCGA-CG-5719     TCGA-CG-5720 
"KRAS WILD-TYPE" "KRAS WILD-TYPE"   "KRAS MUTATED" "KRAS WILD-TYPE" 
    TCGA-CG-5721     TCGA-CG-5722     TCGA-CG-5723     TCGA-CG-5724 
"KRAS WILD-TYPE" "KRAS WILD-TYPE" "KRAS WILD-TYPE" "KRAS WILD-TYPE" 
    TCGA-CG-5725     TCGA-CG-5726     TCGA-CG-5727     TCGA-CG-5728 
"KRAS WILD-TYPE" "KRAS WILD-TYPE"   "KRAS MUTATED" "KRAS WILD-TYPE" 
    TCGA-CG-5730     TCGA-CG-5732     TCGA-CG-5733     TCGA-CG-5734 
"KRAS WILD-TYPE" "KRAS WILD-TYPE" "KRAS WILD-TYPE" "KRAS WILD-TYPE" 
    TCGA-D7-5577     TCGA-D7-5578     TCGA-D7-5579     TCGA-D7-6518 
"KRAS WILD-TYPE" "KRAS WILD-TYPE" "KRAS WILD-TYPE" "KRAS WILD-TYPE" 
    TCGA-D7-6519     TCGA-D7-6520     TCGA-D7-6521     TCGA-D7-6522 
"KRAS WILD-TYPE" "KRAS WILD-TYPE" "KRAS WILD-TYPE" "KRAS WILD-TYPE" 
    TCGA-D7-6524     TCGA-D7-6525     TCGA-D7-6526     TCGA-D7-6527 
"KRAS WILD-TYPE" "KRAS WILD-TYPE" "KRAS WILD-TYPE" "KRAS WILD-TYPE" 
    TCGA-D7-6528     TCGA-D7-6815     TCGA-D7-6817     TCGA-D7-6818 
"KRAS WILD-TYPE"   "KRAS MUTATED" "KRAS WILD-TYPE" "KRAS WILD-TYPE" 
    TCGA-D7-6820     TCGA-D7-6822     TCGA-EQ-5647     TCGA-F1-6177 
"KRAS WILD-TYPE" "KRAS WILD-TYPE" "KRAS WILD-TYPE" "KRAS WILD-TYPE" 
    TCGA-F1-6874 
"KRAS WILD-TYPE" 
    TCGA-B7-5816     TCGA-B7-5818     TCGA-BR-6452     TCGA-BR-6455 
"KRAS WILD-TYPE" "KRAS WILD-TYPE" "KRAS WILD-TYPE" "KRAS WILD-TYPE" 
    TCGA-BR-6457     TCGA-BR-6458     TCGA-BR-6564     TCGA-BR-6565 
"KRAS WILD-TYPE" "KRAS WILD-TYPE" "KRAS WILD-TYPE" "KRAS WILD-TYPE" 
    TCGA-BR-6566     TCGA-BR-6705     TCGA-BR-6706     TCGA-BR-6707 
"KRAS WILD-TYPE"   "KRAS MUTATED" "KRAS WILD-TYPE" "KRAS WILD-TYPE" 
    TCGA-BR-6709     TCGA-BR-6710     TCGA-BR-6801     TCGA-BR-6802 
"KRAS WILD-TYPE" "KRAS WILD-TYPE" "KRAS WILD-TYPE"   "KRAS MUTATED" 
    TCGA-BR-6803     TCGA-BR-6852     TCGA-CD-5798     TCGA-CD-5799 
"KRAS WILD-TYPE" "KRAS WILD-TYPE"   "KRAS MUTATED" "KRAS WILD-TYPE" 
    TCGA-CD-5800     TCGA-CD-5801     TCGA-CD-5802     TCGA-CD-5803 
"KRAS WILD-TYPE" "KRAS WILD-TYPE" "KRAS WILD-TYPE" "KRAS WILD-TYPE" 
    TCGA-CD-5813     TCGA-CG-4300     TCGA-CG-4301     TCGA-CG-4304 
"KRAS WILD-TYPE" "KRAS WILD-TYPE" "KRAS WILD-TYPE" "KRAS WILD-TYPE" 
    TCGA-CG-4305     TCGA-CG-4306     TCGA-CG-4436     TCGA-CG-4437 
"KRAS WILD-TYPE" "KRAS WILD-TYPE" "KRAS WILD-TYPE" "KRAS WILD-TYPE" 
    TCGA-CG-4438     TCGA-CG-4440     TCGA-CG-4441     TCGA-CG-4443 
"KRAS WILD-TYPE" "KRAS WILD-TYPE" "KRAS WILD-TYPE" "KRAS WILD-TYPE" 
    TCGA-CG-4444     TCGA-CG-4449     TCGA-CG-4455     TCGA-CG-4460 
"KRAS WILD-TYPE" "KRAS WILD-TYPE" "KRAS WILD-TYPE" "KRAS WILD-TYPE" 
    TCGA-CG-4462     TCGA-CG-4465     TCGA-CG-4466     TCGA-CG-4469 
"KRAS WILD-TYPE" "KRAS WILD-TYPE" "KRAS WILD-TYPE" "KRAS WILD-TYPE" 
    TCGA-CG-4472     TCGA-CG-4474     TCGA-CG-4477     TCGA-CG-5716 
"KRAS WILD-TYPE" "KRAS WILD-TYPE" "KRAS WILD-TYPE" "KRAS WILD-TYPE" 
    TCGA-CG-5717     TCGA-CG-5718     TCGA-CG-5719     TCGA-CG-5720 
"KRAS WILD-TYPE" "KRAS WILD-TYPE"   "KRAS MUTATED" "KRAS WILD-TYPE" 
    TCGA-CG-5721     TCGA-CG-5722     TCGA-CG-5723     TCGA-CG-5724 
"KRAS WILD-TYPE" "KRAS WILD-TYPE" "KRAS WILD-TYPE" "KRAS WILD-TYPE" 
    TCGA-CG-5725     TCGA-CG-5726     TCGA-CG-5727     TCGA-CG-5728 
"KRAS WILD-TYPE" "KRAS WILD-TYPE"   "KRAS MUTATED" "KRAS WILD-TYPE" 
    TCGA-CG-5730     TCGA-CG-5732     TCGA-CG-5733     TCGA-CG-5734 
"KRAS WILD-TYPE" "KRAS WILD-TYPE" "KRAS WILD-TYPE" "KRAS WILD-TYPE" 
    TCGA-D7-5577     TCGA-D7-5578     TCGA-D7-5579     TCGA-D7-6518 
"KRAS WILD-TYPE" "KRAS WILD-TYPE" "KRAS WILD-TYPE" "KRAS WILD-TYPE" 
    TCGA-D7-6519     TCGA-D7-6520     TCGA-D7-6521     TCGA-D7-6522 
"KRAS WILD-TYPE" "KRAS WILD-TYPE" "KRAS WILD-TYPE" "KRAS WILD-TYPE" 
    TCGA-D7-6524     TCGA-D7-6525     TCGA-D7-6526     TCGA-D7-6527 
"KRAS WILD-TYPE" "KRAS WILD-TYPE" "KRAS WILD-TYPE" "KRAS WILD-TYPE" 
    TCGA-D7-6528     TCGA-D7-6815     TCGA-D7-6817     TCGA-D7-6818 
"KRAS WILD-TYPE"   "KRAS MUTATED" "KRAS WILD-TYPE" "KRAS WILD-TYPE" 
    TCGA-D7-6820     TCGA-D7-6822     TCGA-EQ-5647     TCGA-F1-6177 
"KRAS WILD-TYPE" "KRAS WILD-TYPE" "KRAS WILD-TYPE" "KRAS WILD-TYPE" 
    TCGA-F1-6874 
"KRAS WILD-TYPE" 
    TCGA-B7-5816     TCGA-B7-5818     TCGA-BR-6452     TCGA-BR-6455 
"KRAS WILD-TYPE" "KRAS WILD-TYPE" "KRAS WILD-TYPE" "KRAS WILD-TYPE" 
    TCGA-BR-6457     TCGA-BR-6458     TCGA-BR-6564     TCGA-BR-6565 
"KRAS WILD-TYPE" "KRAS WILD-TYPE" "KRAS WILD-TYPE" "KRAS WILD-TYPE" 
    TCGA-BR-6566     TCGA-BR-6705     TCGA-BR-6706     TCGA-BR-6707 
"KRAS WILD-TYPE"   "KRAS MUTATED" "KRAS WILD-TYPE" "KRAS WILD-TYPE" 
    TCGA-BR-6709     TCGA-BR-6710     TCGA-BR-6801     TCGA-BR-6802 
"KRAS WILD-TYPE" "KRAS WILD-TYPE" "KRAS WILD-TYPE"   "KRAS MUTATED" 
    TCGA-BR-6803     TCGA-BR-6852     TCGA-CD-5798     TCGA-CD-5799 
"KRAS WILD-TYPE" "KRAS WILD-TYPE"   "KRAS MUTATED" "KRAS WILD-TYPE" 
    TCGA-CD-5800     TCGA-CD-5801     TCGA-CD-5802     TCGA-CD-5803 
"KRAS WILD-TYPE" "KRAS WILD-TYPE" "KRAS WILD-TYPE" "KRAS WILD-TYPE" 
    TCGA-CD-5813     TCGA-CG-4300     TCGA-CG-4301     TCGA-CG-4304 
"KRAS WILD-TYPE" "KRAS WILD-TYPE" "KRAS WILD-TYPE" "KRAS WILD-TYPE" 
    TCGA-CG-4305     TCGA-CG-4306     TCGA-CG-4436     TCGA-CG-4437 
"KRAS WILD-TYPE" "KRAS WILD-TYPE" "KRAS WILD-TYPE" "KRAS WILD-TYPE" 
    TCGA-CG-4438     TCGA-CG-4440     TCGA-CG-4441     TCGA-CG-4443 
"KRAS WILD-TYPE" "KRAS WILD-TYPE" "KRAS WILD-TYPE" "KRAS WILD-TYPE" 
    TCGA-CG-4444     TCGA-CG-4449     TCGA-CG-4455     TCGA-CG-4460 
"KRAS WILD-TYPE" "KRAS WILD-TYPE" "KRAS WILD-TYPE" "KRAS WILD-TYPE" 
    TCGA-CG-4462     TCGA-CG-4465     TCGA-CG-4466     TCGA-CG-4469 
"KRAS WILD-TYPE" "KRAS WILD-TYPE" "KRAS WILD-TYPE" "KRAS WILD-TYPE" 
    TCGA-CG-4472     TCGA-CG-4474     TCGA-CG-4477     TCGA-CG-5716 
"KRAS WILD-TYPE" "KRAS WILD-TYPE" "KRAS WILD-TYPE" "KRAS WILD-TYPE" 
    TCGA-CG-5717     TCGA-CG-5718     TCGA-CG-5719     TCGA-CG-5720 
"KRAS WILD-TYPE" "KRAS WILD-TYPE"   "KRAS MUTATED" "KRAS WILD-TYPE" 
    TCGA-CG-5721     TCGA-CG-5722     TCGA-CG-5723     TCGA-CG-5724 
"KRAS WILD-TYPE" "KRAS WILD-TYPE" "KRAS WILD-TYPE" "KRAS WILD-TYPE" 
    TCGA-CG-5725     TCGA-CG-5726     TCGA-CG-5727     TCGA-CG-5728 
"KRAS WILD-TYPE" "KRAS WILD-TYPE"   "KRAS MUTATED" "KRAS WILD-TYPE" 
    TCGA-CG-5730     TCGA-CG-5732     TCGA-CG-5733     TCGA-CG-5734 
"KRAS WILD-TYPE" "KRAS WILD-TYPE" "KRAS WILD-TYPE" "KRAS WILD-TYPE" 
    TCGA-D7-5577     TCGA-D7-5578     TCGA-D7-5579     TCGA-D7-6518 
"KRAS WILD-TYPE" "KRAS WILD-TYPE" "KRAS WILD-TYPE" "KRAS WILD-TYPE" 
    TCGA-D7-6519     TCGA-D7-6520     TCGA-D7-6521     TCGA-D7-6522 
"KRAS WILD-TYPE" "KRAS WILD-TYPE" "KRAS WILD-TYPE" "KRAS WILD-TYPE" 
    TCGA-D7-6524     TCGA-D7-6525     TCGA-D7-6526     TCGA-D7-6527 
"KRAS WILD-TYPE" "KRAS WILD-TYPE" "KRAS WILD-TYPE" "KRAS WILD-TYPE" 
    TCGA-D7-6528     TCGA-D7-6815     TCGA-D7-6817     TCGA-D7-6818 
"KRAS WILD-TYPE"   "KRAS MUTATED" "KRAS WILD-TYPE" "KRAS WILD-TYPE" 
    TCGA-D7-6820     TCGA-D7-6822     TCGA-EQ-5647     TCGA-F1-6177 
"KRAS WILD-TYPE" "KRAS WILD-TYPE" "KRAS WILD-TYPE" "KRAS WILD-TYPE" 
    TCGA-F1-6874 
"KRAS WILD-TYPE" 
[1] "hr="     "7.3e+07"
D2V2, continuous
D2V3, binary
[1] "tbl2"
                cls
clus             [,1] [,2]
  KRAS MUTATED      8    6
  KRAS WILD-TYPE   38   64
        clus
vv       KRAS MUTATED KRAS WILD-TYPE
  FEMALE            8             38
  MALE              6             64
D2V4, multiclass
D2V5, multiclass
    clus
vv   KRAS MUTATED KRAS WILD-TYPE
  T1            0              4
  T2            5             41
  T3            5             36
  T4            3             12
D2V6, multiclass
    clus
vv   KRAS MUTATED KRAS WILD-TYPE
  N0            6             29
  N1            3             36
  N2            3             16
  N3            0             12
D2V7, multiclass
    clus
vv   KRAS MUTATED KRAS WILD-TYPE
  M0           12             87
  M1            1             12
  MX            1              3
D2V8, multiclass
     clus
vv    KRAS MUTATED KRAS WILD-TYPE
  I              2             16
  II             2             30
  III            6             23
  IV             2             19

Clustering(3) Variable = PIK3CA MUTATION ANALYSIS
D3V1, survival
                  sevent
clus2               0  1
  PIK3CA MUTATED   18  1
  PIK3CA WILD-TYPE 53 13
  PIK3CA MUTATED PIK3CA WILD-TYPE 
              19               66 
  PIK3CA MUTATED PIK3CA WILD-TYPE 
               1               13 
$`PIK3CA MUTATED`
TCGA-B7-5816 TCGA-B7-5818 TCGA-BR-6452 TCGA-BR-6455 TCGA-BR-6706 TCGA-BR-6707 
        5.62         0.10         0.95         1.41         2.17         0.99 
TCGA-BR-6802 TCGA-BR-6852 TCGA-CD-5801 TCGA-CG-4305 TCGA-CG-4474 TCGA-CG-5721 
        0.76         0.26         0.49        15.95         1.02         5.98 
TCGA-CG-5722 TCGA-CG-5728 TCGA-CG-5733 TCGA-D7-5577 TCGA-D7-5578 TCGA-D7-6815 
        0.95        65.10        21.07         8.65         3.58         3.65 
TCGA-F1-6177 
        6.54 

$`PIK3CA WILD-TYPE`
TCGA-BR-6457 TCGA-BR-6458 TCGA-BR-6564 TCGA-BR-6565 TCGA-BR-6566 TCGA-BR-6705 
        1.35         1.35         0.82         0.62         0.62         1.71 
TCGA-BR-6709 TCGA-BR-6710 TCGA-BR-6801 TCGA-BR-6803 TCGA-CD-5798 TCGA-CD-5799 
        1.22         0.66         1.12         0.66         0.82         0.69 
TCGA-CD-5800 TCGA-CD-5802 TCGA-CD-5803 TCGA-CD-5813 TCGA-CG-4300 TCGA-CG-4301 
        0.36         0.30         0.07         0.39        20.02         3.02 
TCGA-CG-4304 TCGA-CG-4306 TCGA-CG-4436 TCGA-CG-4437 TCGA-CG-4438 TCGA-CG-4440 
       27.02         1.02        52.96         8.05        54.05         4.01 
TCGA-CG-4441 TCGA-CG-4443 TCGA-CG-4444 TCGA-CG-4449 TCGA-CG-4455 TCGA-CG-4460 
       14.01        29.98        47.05        19.07        12.03        21.99 
TCGA-CG-4462 TCGA-CG-4465 TCGA-CG-4466 TCGA-CG-4469 TCGA-CG-4472 TCGA-CG-4477 
        1.02         8.98        18.94         7.07        12.00         1.02 
TCGA-CG-5716 TCGA-CG-5717 TCGA-CG-5718 TCGA-CG-5719 TCGA-CG-5720 TCGA-CG-5723 
        1.02         6.94         1.02         1.02         0.99        70.06 
TCGA-CG-5724 TCGA-CG-5725 TCGA-CG-5726 TCGA-CG-5727 TCGA-CG-5730 TCGA-CG-5732 
       12.03        15.02        28.96        31.04         4.01        55.04 
TCGA-CG-5734 TCGA-D7-5579 TCGA-D7-6518 TCGA-D7-6519 TCGA-D7-6520 TCGA-D7-6521 
        7.99         4.54         9.80        15.65         9.63         8.19 
TCGA-D7-6522 TCGA-D7-6524 TCGA-D7-6525 TCGA-D7-6526 TCGA-D7-6527 TCGA-D7-6528 
        6.90         0.69         5.95         6.61         4.14         1.68 
TCGA-D7-6817 TCGA-D7-6818 TCGA-D7-6820 TCGA-D7-6822 TCGA-EQ-5647 TCGA-F1-6874 
        4.70         4.04         2.93         4.27         0.62         2.01 

  PIK3CA MUTATED PIK3CA WILD-TYPE 
            0.10             0.07 
  PIK3CA MUTATED PIK3CA WILD-TYPE 
           65.10            70.06 
  PIK3CA MUTATED PIK3CA WILD-TYPE 
           2.170            4.205 
[1] "0.1 - 65.1 (2.2)" "0.1 - 70.1 (4.2)"
      TCGA-B7-5816       TCGA-B7-5818       TCGA-BR-6452       TCGA-BR-6455 
  "PIK3CA MUTATED"   "PIK3CA MUTATED"   "PIK3CA MUTATED"   "PIK3CA MUTATED" 
      TCGA-BR-6457       TCGA-BR-6458       TCGA-BR-6564       TCGA-BR-6565 
"PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" 
      TCGA-BR-6566       TCGA-BR-6705       TCGA-BR-6706       TCGA-BR-6707 
"PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE"   "PIK3CA MUTATED"   "PIK3CA MUTATED" 
      TCGA-BR-6709       TCGA-BR-6710       TCGA-BR-6801       TCGA-BR-6802 
"PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE"   "PIK3CA MUTATED" 
      TCGA-BR-6803       TCGA-BR-6852       TCGA-CD-5798       TCGA-CD-5799 
"PIK3CA WILD-TYPE"   "PIK3CA MUTATED" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" 
      TCGA-CD-5800       TCGA-CD-5801       TCGA-CD-5802       TCGA-CD-5803 
"PIK3CA WILD-TYPE"   "PIK3CA MUTATED" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" 
      TCGA-CD-5813       TCGA-CG-4300       TCGA-CG-4301       TCGA-CG-4304 
"PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" 
      TCGA-CG-4305       TCGA-CG-4306       TCGA-CG-4436       TCGA-CG-4437 
  "PIK3CA MUTATED" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" 
      TCGA-CG-4438       TCGA-CG-4440       TCGA-CG-4441       TCGA-CG-4443 
"PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" 
      TCGA-CG-4444       TCGA-CG-4449       TCGA-CG-4455       TCGA-CG-4460 
"PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" 
      TCGA-CG-4462       TCGA-CG-4465       TCGA-CG-4466       TCGA-CG-4469 
"PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" 
      TCGA-CG-4472       TCGA-CG-4474       TCGA-CG-4477       TCGA-CG-5716 
"PIK3CA WILD-TYPE"   "PIK3CA MUTATED" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" 
      TCGA-CG-5717       TCGA-CG-5718       TCGA-CG-5719       TCGA-CG-5720 
"PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" 
      TCGA-CG-5721       TCGA-CG-5722       TCGA-CG-5723       TCGA-CG-5724 
  "PIK3CA MUTATED"   "PIK3CA MUTATED" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" 
      TCGA-CG-5725       TCGA-CG-5726       TCGA-CG-5727       TCGA-CG-5728 
"PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE"   "PIK3CA MUTATED" 
      TCGA-CG-5730       TCGA-CG-5732       TCGA-CG-5733       TCGA-CG-5734 
"PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE"   "PIK3CA MUTATED" "PIK3CA WILD-TYPE" 
      TCGA-D7-5577       TCGA-D7-5578       TCGA-D7-5579       TCGA-D7-6518 
  "PIK3CA MUTATED"   "PIK3CA MUTATED" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" 
      TCGA-D7-6519       TCGA-D7-6520       TCGA-D7-6521       TCGA-D7-6522 
"PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" 
      TCGA-D7-6524       TCGA-D7-6525       TCGA-D7-6526       TCGA-D7-6527 
"PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" 
      TCGA-D7-6528       TCGA-D7-6815       TCGA-D7-6817       TCGA-D7-6818 
"PIK3CA WILD-TYPE"   "PIK3CA MUTATED" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" 
      TCGA-D7-6820       TCGA-D7-6822       TCGA-EQ-5647       TCGA-F1-6177 
"PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE"   "PIK3CA MUTATED" 
      TCGA-F1-6874 
"PIK3CA WILD-TYPE" 
      TCGA-B7-5816       TCGA-B7-5818       TCGA-BR-6452       TCGA-BR-6455 
  "PIK3CA MUTATED"   "PIK3CA MUTATED"   "PIK3CA MUTATED"   "PIK3CA MUTATED" 
      TCGA-BR-6457       TCGA-BR-6458       TCGA-BR-6564       TCGA-BR-6565 
"PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" 
      TCGA-BR-6566       TCGA-BR-6705       TCGA-BR-6706       TCGA-BR-6707 
"PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE"   "PIK3CA MUTATED"   "PIK3CA MUTATED" 
      TCGA-BR-6709       TCGA-BR-6710       TCGA-BR-6801       TCGA-BR-6802 
"PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE"   "PIK3CA MUTATED" 
      TCGA-BR-6803       TCGA-BR-6852       TCGA-CD-5798       TCGA-CD-5799 
"PIK3CA WILD-TYPE"   "PIK3CA MUTATED" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" 
      TCGA-CD-5800       TCGA-CD-5801       TCGA-CD-5802       TCGA-CD-5803 
"PIK3CA WILD-TYPE"   "PIK3CA MUTATED" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" 
      TCGA-CD-5813       TCGA-CG-4300       TCGA-CG-4301       TCGA-CG-4304 
"PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" 
      TCGA-CG-4305       TCGA-CG-4306       TCGA-CG-4436       TCGA-CG-4437 
  "PIK3CA MUTATED" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" 
      TCGA-CG-4438       TCGA-CG-4440       TCGA-CG-4441       TCGA-CG-4443 
"PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" 
      TCGA-CG-4444       TCGA-CG-4449       TCGA-CG-4455       TCGA-CG-4460 
"PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" 
      TCGA-CG-4462       TCGA-CG-4465       TCGA-CG-4466       TCGA-CG-4469 
"PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" 
      TCGA-CG-4472       TCGA-CG-4474       TCGA-CG-4477       TCGA-CG-5716 
"PIK3CA WILD-TYPE"   "PIK3CA MUTATED" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" 
      TCGA-CG-5717       TCGA-CG-5718       TCGA-CG-5719       TCGA-CG-5720 
"PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" 
      TCGA-CG-5721       TCGA-CG-5722       TCGA-CG-5723       TCGA-CG-5724 
  "PIK3CA MUTATED"   "PIK3CA MUTATED" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" 
      TCGA-CG-5725       TCGA-CG-5726       TCGA-CG-5727       TCGA-CG-5728 
"PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE"   "PIK3CA MUTATED" 
      TCGA-CG-5730       TCGA-CG-5732       TCGA-CG-5733       TCGA-CG-5734 
"PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE"   "PIK3CA MUTATED" "PIK3CA WILD-TYPE" 
      TCGA-D7-5577       TCGA-D7-5578       TCGA-D7-5579       TCGA-D7-6518 
  "PIK3CA MUTATED"   "PIK3CA MUTATED" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" 
      TCGA-D7-6519       TCGA-D7-6520       TCGA-D7-6521       TCGA-D7-6522 
"PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" 
      TCGA-D7-6524       TCGA-D7-6525       TCGA-D7-6526       TCGA-D7-6527 
"PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" 
      TCGA-D7-6528       TCGA-D7-6815       TCGA-D7-6817       TCGA-D7-6818 
"PIK3CA WILD-TYPE"   "PIK3CA MUTATED" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" 
      TCGA-D7-6820       TCGA-D7-6822       TCGA-EQ-5647       TCGA-F1-6177 
"PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE"   "PIK3CA MUTATED" 
      TCGA-F1-6874 
"PIK3CA WILD-TYPE" 
      TCGA-B7-5816       TCGA-B7-5818       TCGA-BR-6452       TCGA-BR-6455 
  "PIK3CA MUTATED"   "PIK3CA MUTATED"   "PIK3CA MUTATED"   "PIK3CA MUTATED" 
      TCGA-BR-6457       TCGA-BR-6458       TCGA-BR-6564       TCGA-BR-6565 
"PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" 
      TCGA-BR-6566       TCGA-BR-6705       TCGA-BR-6706       TCGA-BR-6707 
"PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE"   "PIK3CA MUTATED"   "PIK3CA MUTATED" 
      TCGA-BR-6709       TCGA-BR-6710       TCGA-BR-6801       TCGA-BR-6802 
"PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE"   "PIK3CA MUTATED" 
      TCGA-BR-6803       TCGA-BR-6852       TCGA-CD-5798       TCGA-CD-5799 
"PIK3CA WILD-TYPE"   "PIK3CA MUTATED" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" 
      TCGA-CD-5800       TCGA-CD-5801       TCGA-CD-5802       TCGA-CD-5803 
"PIK3CA WILD-TYPE"   "PIK3CA MUTATED" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" 
      TCGA-CD-5813       TCGA-CG-4300       TCGA-CG-4301       TCGA-CG-4304 
"PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" 
      TCGA-CG-4305       TCGA-CG-4306       TCGA-CG-4436       TCGA-CG-4437 
  "PIK3CA MUTATED" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" 
      TCGA-CG-4438       TCGA-CG-4440       TCGA-CG-4441       TCGA-CG-4443 
"PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" 
      TCGA-CG-4444       TCGA-CG-4449       TCGA-CG-4455       TCGA-CG-4460 
"PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" 
      TCGA-CG-4462       TCGA-CG-4465       TCGA-CG-4466       TCGA-CG-4469 
"PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" 
      TCGA-CG-4472       TCGA-CG-4474       TCGA-CG-4477       TCGA-CG-5716 
"PIK3CA WILD-TYPE"   "PIK3CA MUTATED" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" 
      TCGA-CG-5717       TCGA-CG-5718       TCGA-CG-5719       TCGA-CG-5720 
"PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" 
      TCGA-CG-5721       TCGA-CG-5722       TCGA-CG-5723       TCGA-CG-5724 
  "PIK3CA MUTATED"   "PIK3CA MUTATED" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" 
      TCGA-CG-5725       TCGA-CG-5726       TCGA-CG-5727       TCGA-CG-5728 
"PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE"   "PIK3CA MUTATED" 
      TCGA-CG-5730       TCGA-CG-5732       TCGA-CG-5733       TCGA-CG-5734 
"PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE"   "PIK3CA MUTATED" "PIK3CA WILD-TYPE" 
      TCGA-D7-5577       TCGA-D7-5578       TCGA-D7-5579       TCGA-D7-6518 
  "PIK3CA MUTATED"   "PIK3CA MUTATED" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" 
      TCGA-D7-6519       TCGA-D7-6520       TCGA-D7-6521       TCGA-D7-6522 
"PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" 
      TCGA-D7-6524       TCGA-D7-6525       TCGA-D7-6526       TCGA-D7-6527 
"PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" 
      TCGA-D7-6528       TCGA-D7-6815       TCGA-D7-6817       TCGA-D7-6818 
"PIK3CA WILD-TYPE"   "PIK3CA MUTATED" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" 
      TCGA-D7-6820       TCGA-D7-6822       TCGA-EQ-5647       TCGA-F1-6177 
"PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE"   "PIK3CA MUTATED" 
      TCGA-F1-6874 
"PIK3CA WILD-TYPE" 
[1] "hr=" "2.3"
D3V2, continuous
D3V3, binary
[1] "tbl2"
                  cls
clus               [,1] [,2]
  PIK3CA MUTATED     12   12
  PIK3CA WILD-TYPE   34   58
        clus
vv       PIK3CA MUTATED PIK3CA WILD-TYPE
  FEMALE             12               34
  MALE               12               58
D3V4, multiclass
D3V5, multiclass
    clus
vv   PIK3CA MUTATED PIK3CA WILD-TYPE
  T1              1                3
  T2              8               38
  T3             11               30
  T4              4               11
D3V6, multiclass
    clus
vv   PIK3CA MUTATED PIK3CA WILD-TYPE
  N0              9               26
  N1              8               31
  N2              5               14
  N3              1               11
D3V7, multiclass
    clus
vv   PIK3CA MUTATED PIK3CA WILD-TYPE
  M0             21               78
  M1              2               11
  MX              1                3
D3V8, multiclass
     clus
vv    PIK3CA MUTATED PIK3CA WILD-TYPE
  I                4               14
  II               6               26
  III             10               19
  IV               3               18

Clustering(4) Variable = CBWD1 MUTATION ANALYSIS
D4V1, survival
                 sevent
clus2              0  1
  CBWD1 MUTATED    5  3
  CBWD1 WILD-TYPE 66 11
  CBWD1 MUTATED CBWD1 WILD-TYPE 
              8              77 
  CBWD1 MUTATED CBWD1 WILD-TYPE 
              3              11 
$`CBWD1 MUTATED`
TCGA-BR-6452 TCGA-BR-6852 TCGA-CG-4305 TCGA-CG-4306 TCGA-CG-4460 TCGA-CG-5721 
        0.95         0.26        15.95         1.02        21.99         5.98 
TCGA-CG-5726 TCGA-F1-6177 
       28.96         6.54 

$`CBWD1 WILD-TYPE`
TCGA-B7-5816 TCGA-B7-5818 TCGA-BR-6455 TCGA-BR-6457 TCGA-BR-6458 TCGA-BR-6564 
        5.62         0.10         1.41         1.35         1.35         0.82 
TCGA-BR-6565 TCGA-BR-6566 TCGA-BR-6705 TCGA-BR-6706 TCGA-BR-6707 TCGA-BR-6709 
        0.62         0.62         1.71         2.17         0.99         1.22 
TCGA-BR-6710 TCGA-BR-6801 TCGA-BR-6802 TCGA-BR-6803 TCGA-CD-5798 TCGA-CD-5799 
        0.66         1.12         0.76         0.66         0.82         0.69 
TCGA-CD-5800 TCGA-CD-5801 TCGA-CD-5802 TCGA-CD-5803 TCGA-CD-5813 TCGA-CG-4300 
        0.36         0.49         0.30         0.07         0.39        20.02 
TCGA-CG-4301 TCGA-CG-4304 TCGA-CG-4436 TCGA-CG-4437 TCGA-CG-4438 TCGA-CG-4440 
        3.02        27.02        52.96         8.05        54.05         4.01 
TCGA-CG-4441 TCGA-CG-4443 TCGA-CG-4444 TCGA-CG-4449 TCGA-CG-4455 TCGA-CG-4462 
       14.01        29.98        47.05        19.07        12.03         1.02 
TCGA-CG-4465 TCGA-CG-4466 TCGA-CG-4469 TCGA-CG-4472 TCGA-CG-4474 TCGA-CG-4477 
        8.98        18.94         7.07        12.00         1.02         1.02 
TCGA-CG-5716 TCGA-CG-5717 TCGA-CG-5718 TCGA-CG-5719 TCGA-CG-5720 TCGA-CG-5722 
        1.02         6.94         1.02         1.02         0.99         0.95 
TCGA-CG-5723 TCGA-CG-5724 TCGA-CG-5725 TCGA-CG-5727 TCGA-CG-5728 TCGA-CG-5730 
       70.06        12.03        15.02        31.04        65.10         4.01 
TCGA-CG-5732 TCGA-CG-5733 TCGA-CG-5734 TCGA-D7-5577 TCGA-D7-5578 TCGA-D7-5579 
       55.04        21.07         7.99         8.65         3.58         4.54 
TCGA-D7-6518 TCGA-D7-6519 TCGA-D7-6520 TCGA-D7-6521 TCGA-D7-6522 TCGA-D7-6524 
        9.80        15.65         9.63         8.19         6.90         0.69 
TCGA-D7-6525 TCGA-D7-6526 TCGA-D7-6527 TCGA-D7-6528 TCGA-D7-6815 TCGA-D7-6817 
        5.95         6.61         4.14         1.68         3.65         4.70 
TCGA-D7-6818 TCGA-D7-6820 TCGA-D7-6822 TCGA-EQ-5647 TCGA-F1-6874 
        4.04         2.93         4.27         0.62         2.01 

  CBWD1 MUTATED CBWD1 WILD-TYPE 
           0.26            0.07 
  CBWD1 MUTATED CBWD1 WILD-TYPE 
          28.96           70.06 
  CBWD1 MUTATED CBWD1 WILD-TYPE 
           6.26            4.01 
[1] "0.3 - 29.0 (6.3)" "0.1 - 70.1 (4.0)"
     TCGA-B7-5816      TCGA-B7-5818      TCGA-BR-6452      TCGA-BR-6455 
"CBWD1 WILD-TYPE" "CBWD1 WILD-TYPE"   "CBWD1 MUTATED" "CBWD1 WILD-TYPE" 
     TCGA-BR-6457      TCGA-BR-6458      TCGA-BR-6564      TCGA-BR-6565 
"CBWD1 WILD-TYPE" "CBWD1 WILD-TYPE" "CBWD1 WILD-TYPE" "CBWD1 WILD-TYPE" 
     TCGA-BR-6566      TCGA-BR-6705      TCGA-BR-6706      TCGA-BR-6707 
"CBWD1 WILD-TYPE" "CBWD1 WILD-TYPE" "CBWD1 WILD-TYPE" "CBWD1 WILD-TYPE" 
     TCGA-BR-6709      TCGA-BR-6710      TCGA-BR-6801      TCGA-BR-6802 
"CBWD1 WILD-TYPE" "CBWD1 WILD-TYPE" "CBWD1 WILD-TYPE" "CBWD1 WILD-TYPE" 
     TCGA-BR-6803      TCGA-BR-6852      TCGA-CD-5798      TCGA-CD-5799 
"CBWD1 WILD-TYPE"   "CBWD1 MUTATED" "CBWD1 WILD-TYPE" "CBWD1 WILD-TYPE" 
     TCGA-CD-5800      TCGA-CD-5801      TCGA-CD-5802      TCGA-CD-5803 
"CBWD1 WILD-TYPE" "CBWD1 WILD-TYPE" "CBWD1 WILD-TYPE" "CBWD1 WILD-TYPE" 
     TCGA-CD-5813      TCGA-CG-4300      TCGA-CG-4301      TCGA-CG-4304 
"CBWD1 WILD-TYPE" "CBWD1 WILD-TYPE" "CBWD1 WILD-TYPE" "CBWD1 WILD-TYPE" 
     TCGA-CG-4305      TCGA-CG-4306      TCGA-CG-4436      TCGA-CG-4437 
  "CBWD1 MUTATED"   "CBWD1 MUTATED" "CBWD1 WILD-TYPE" "CBWD1 WILD-TYPE" 
     TCGA-CG-4438      TCGA-CG-4440      TCGA-CG-4441      TCGA-CG-4443 
"CBWD1 WILD-TYPE" "CBWD1 WILD-TYPE" "CBWD1 WILD-TYPE" "CBWD1 WILD-TYPE" 
     TCGA-CG-4444      TCGA-CG-4449      TCGA-CG-4455      TCGA-CG-4460 
"CBWD1 WILD-TYPE" "CBWD1 WILD-TYPE" "CBWD1 WILD-TYPE"   "CBWD1 MUTATED" 
     TCGA-CG-4462      TCGA-CG-4465      TCGA-CG-4466      TCGA-CG-4469 
"CBWD1 WILD-TYPE" "CBWD1 WILD-TYPE" "CBWD1 WILD-TYPE" "CBWD1 WILD-TYPE" 
     TCGA-CG-4472      TCGA-CG-4474      TCGA-CG-4477      TCGA-CG-5716 
"CBWD1 WILD-TYPE" "CBWD1 WILD-TYPE" "CBWD1 WILD-TYPE" "CBWD1 WILD-TYPE" 
     TCGA-CG-5717      TCGA-CG-5718      TCGA-CG-5719      TCGA-CG-5720 
"CBWD1 WILD-TYPE" "CBWD1 WILD-TYPE" "CBWD1 WILD-TYPE" "CBWD1 WILD-TYPE" 
     TCGA-CG-5721      TCGA-CG-5722      TCGA-CG-5723      TCGA-CG-5724 
  "CBWD1 MUTATED" "CBWD1 WILD-TYPE" "CBWD1 WILD-TYPE" "CBWD1 WILD-TYPE" 
     TCGA-CG-5725      TCGA-CG-5726      TCGA-CG-5727      TCGA-CG-5728 
"CBWD1 WILD-TYPE"   "CBWD1 MUTATED" "CBWD1 WILD-TYPE" "CBWD1 WILD-TYPE" 
     TCGA-CG-5730      TCGA-CG-5732      TCGA-CG-5733      TCGA-CG-5734 
"CBWD1 WILD-TYPE" "CBWD1 WILD-TYPE" "CBWD1 WILD-TYPE" "CBWD1 WILD-TYPE" 
     TCGA-D7-5577      TCGA-D7-5578      TCGA-D7-5579      TCGA-D7-6518 
"CBWD1 WILD-TYPE" "CBWD1 WILD-TYPE" "CBWD1 WILD-TYPE" "CBWD1 WILD-TYPE" 
     TCGA-D7-6519      TCGA-D7-6520      TCGA-D7-6521      TCGA-D7-6522 
"CBWD1 WILD-TYPE" "CBWD1 WILD-TYPE" "CBWD1 WILD-TYPE" "CBWD1 WILD-TYPE" 
     TCGA-D7-6524      TCGA-D7-6525      TCGA-D7-6526      TCGA-D7-6527 
"CBWD1 WILD-TYPE" "CBWD1 WILD-TYPE" "CBWD1 WILD-TYPE" "CBWD1 WILD-TYPE" 
     TCGA-D7-6528      TCGA-D7-6815      TCGA-D7-6817      TCGA-D7-6818 
"CBWD1 WILD-TYPE" "CBWD1 WILD-TYPE" "CBWD1 WILD-TYPE" "CBWD1 WILD-TYPE" 
     TCGA-D7-6820      TCGA-D7-6822      TCGA-EQ-5647      TCGA-F1-6177 
"CBWD1 WILD-TYPE" "CBWD1 WILD-TYPE" "CBWD1 WILD-TYPE"   "CBWD1 MUTATED" 
     TCGA-F1-6874 
"CBWD1 WILD-TYPE" 
     TCGA-B7-5816      TCGA-B7-5818      TCGA-BR-6452      TCGA-BR-6455 
"CBWD1 WILD-TYPE" "CBWD1 WILD-TYPE"   "CBWD1 MUTATED" "CBWD1 WILD-TYPE" 
     TCGA-BR-6457      TCGA-BR-6458      TCGA-BR-6564      TCGA-BR-6565 
"CBWD1 WILD-TYPE" "CBWD1 WILD-TYPE" "CBWD1 WILD-TYPE" "CBWD1 WILD-TYPE" 
     TCGA-BR-6566      TCGA-BR-6705      TCGA-BR-6706      TCGA-BR-6707 
"CBWD1 WILD-TYPE" "CBWD1 WILD-TYPE" "CBWD1 WILD-TYPE" "CBWD1 WILD-TYPE" 
     TCGA-BR-6709      TCGA-BR-6710      TCGA-BR-6801      TCGA-BR-6802 
"CBWD1 WILD-TYPE" "CBWD1 WILD-TYPE" "CBWD1 WILD-TYPE" "CBWD1 WILD-TYPE" 
     TCGA-BR-6803      TCGA-BR-6852      TCGA-CD-5798      TCGA-CD-5799 
"CBWD1 WILD-TYPE"   "CBWD1 MUTATED" "CBWD1 WILD-TYPE" "CBWD1 WILD-TYPE" 
     TCGA-CD-5800      TCGA-CD-5801      TCGA-CD-5802      TCGA-CD-5803 
"CBWD1 WILD-TYPE" "CBWD1 WILD-TYPE" "CBWD1 WILD-TYPE" "CBWD1 WILD-TYPE" 
     TCGA-CD-5813      TCGA-CG-4300      TCGA-CG-4301      TCGA-CG-4304 
"CBWD1 WILD-TYPE" "CBWD1 WILD-TYPE" "CBWD1 WILD-TYPE" "CBWD1 WILD-TYPE" 
     TCGA-CG-4305      TCGA-CG-4306      TCGA-CG-4436      TCGA-CG-4437 
  "CBWD1 MUTATED"   "CBWD1 MUTATED" "CBWD1 WILD-TYPE" "CBWD1 WILD-TYPE" 
     TCGA-CG-4438      TCGA-CG-4440      TCGA-CG-4441      TCGA-CG-4443 
"CBWD1 WILD-TYPE" "CBWD1 WILD-TYPE" "CBWD1 WILD-TYPE" "CBWD1 WILD-TYPE" 
     TCGA-CG-4444      TCGA-CG-4449      TCGA-CG-4455      TCGA-CG-4460 
"CBWD1 WILD-TYPE" "CBWD1 WILD-TYPE" "CBWD1 WILD-TYPE"   "CBWD1 MUTATED" 
     TCGA-CG-4462      TCGA-CG-4465      TCGA-CG-4466      TCGA-CG-4469 
"CBWD1 WILD-TYPE" "CBWD1 WILD-TYPE" "CBWD1 WILD-TYPE" "CBWD1 WILD-TYPE" 
     TCGA-CG-4472      TCGA-CG-4474      TCGA-CG-4477      TCGA-CG-5716 
"CBWD1 WILD-TYPE" "CBWD1 WILD-TYPE" "CBWD1 WILD-TYPE" "CBWD1 WILD-TYPE" 
     TCGA-CG-5717      TCGA-CG-5718      TCGA-CG-5719      TCGA-CG-5720 
"CBWD1 WILD-TYPE" "CBWD1 WILD-TYPE" "CBWD1 WILD-TYPE" "CBWD1 WILD-TYPE" 
     TCGA-CG-5721      TCGA-CG-5722      TCGA-CG-5723      TCGA-CG-5724 
  "CBWD1 MUTATED" "CBWD1 WILD-TYPE" "CBWD1 WILD-TYPE" "CBWD1 WILD-TYPE" 
     TCGA-CG-5725      TCGA-CG-5726      TCGA-CG-5727      TCGA-CG-5728 
"CBWD1 WILD-TYPE"   "CBWD1 MUTATED" "CBWD1 WILD-TYPE" "CBWD1 WILD-TYPE" 
     TCGA-CG-5730      TCGA-CG-5732      TCGA-CG-5733      TCGA-CG-5734 
"CBWD1 WILD-TYPE" "CBWD1 WILD-TYPE" "CBWD1 WILD-TYPE" "CBWD1 WILD-TYPE" 
     TCGA-D7-5577      TCGA-D7-5578      TCGA-D7-5579      TCGA-D7-6518 
"CBWD1 WILD-TYPE" "CBWD1 WILD-TYPE" "CBWD1 WILD-TYPE" "CBWD1 WILD-TYPE" 
     TCGA-D7-6519      TCGA-D7-6520      TCGA-D7-6521      TCGA-D7-6522 
"CBWD1 WILD-TYPE" "CBWD1 WILD-TYPE" "CBWD1 WILD-TYPE" "CBWD1 WILD-TYPE" 
     TCGA-D7-6524      TCGA-D7-6525      TCGA-D7-6526      TCGA-D7-6527 
"CBWD1 WILD-TYPE" "CBWD1 WILD-TYPE" "CBWD1 WILD-TYPE" "CBWD1 WILD-TYPE" 
     TCGA-D7-6528      TCGA-D7-6815      TCGA-D7-6817      TCGA-D7-6818 
"CBWD1 WILD-TYPE" "CBWD1 WILD-TYPE" "CBWD1 WILD-TYPE" "CBWD1 WILD-TYPE" 
     TCGA-D7-6820      TCGA-D7-6822      TCGA-EQ-5647      TCGA-F1-6177 
"CBWD1 WILD-TYPE" "CBWD1 WILD-TYPE" "CBWD1 WILD-TYPE"   "CBWD1 MUTATED" 
     TCGA-F1-6874 
"CBWD1 WILD-TYPE" 
     TCGA-B7-5816      TCGA-B7-5818      TCGA-BR-6452      TCGA-BR-6455 
"CBWD1 WILD-TYPE" "CBWD1 WILD-TYPE"   "CBWD1 MUTATED" "CBWD1 WILD-TYPE" 
     TCGA-BR-6457      TCGA-BR-6458      TCGA-BR-6564      TCGA-BR-6565 
"CBWD1 WILD-TYPE" "CBWD1 WILD-TYPE" "CBWD1 WILD-TYPE" "CBWD1 WILD-TYPE" 
     TCGA-BR-6566      TCGA-BR-6705      TCGA-BR-6706      TCGA-BR-6707 
"CBWD1 WILD-TYPE" "CBWD1 WILD-TYPE" "CBWD1 WILD-TYPE" "CBWD1 WILD-TYPE" 
     TCGA-BR-6709      TCGA-BR-6710      TCGA-BR-6801      TCGA-BR-6802 
"CBWD1 WILD-TYPE" "CBWD1 WILD-TYPE" "CBWD1 WILD-TYPE" "CBWD1 WILD-TYPE" 
     TCGA-BR-6803      TCGA-BR-6852      TCGA-CD-5798      TCGA-CD-5799 
"CBWD1 WILD-TYPE"   "CBWD1 MUTATED" "CBWD1 WILD-TYPE" "CBWD1 WILD-TYPE" 
     TCGA-CD-5800      TCGA-CD-5801      TCGA-CD-5802      TCGA-CD-5803 
"CBWD1 WILD-TYPE" "CBWD1 WILD-TYPE" "CBWD1 WILD-TYPE" "CBWD1 WILD-TYPE" 
     TCGA-CD-5813      TCGA-CG-4300      TCGA-CG-4301      TCGA-CG-4304 
"CBWD1 WILD-TYPE" "CBWD1 WILD-TYPE" "CBWD1 WILD-TYPE" "CBWD1 WILD-TYPE" 
     TCGA-CG-4305      TCGA-CG-4306      TCGA-CG-4436      TCGA-CG-4437 
  "CBWD1 MUTATED"   "CBWD1 MUTATED" "CBWD1 WILD-TYPE" "CBWD1 WILD-TYPE" 
     TCGA-CG-4438      TCGA-CG-4440      TCGA-CG-4441      TCGA-CG-4443 
"CBWD1 WILD-TYPE" "CBWD1 WILD-TYPE" "CBWD1 WILD-TYPE" "CBWD1 WILD-TYPE" 
     TCGA-CG-4444      TCGA-CG-4449      TCGA-CG-4455      TCGA-CG-4460 
"CBWD1 WILD-TYPE" "CBWD1 WILD-TYPE" "CBWD1 WILD-TYPE"   "CBWD1 MUTATED" 
     TCGA-CG-4462      TCGA-CG-4465      TCGA-CG-4466      TCGA-CG-4469 
"CBWD1 WILD-TYPE" "CBWD1 WILD-TYPE" "CBWD1 WILD-TYPE" "CBWD1 WILD-TYPE" 
     TCGA-CG-4472      TCGA-CG-4474      TCGA-CG-4477      TCGA-CG-5716 
"CBWD1 WILD-TYPE" "CBWD1 WILD-TYPE" "CBWD1 WILD-TYPE" "CBWD1 WILD-TYPE" 
     TCGA-CG-5717      TCGA-CG-5718      TCGA-CG-5719      TCGA-CG-5720 
"CBWD1 WILD-TYPE" "CBWD1 WILD-TYPE" "CBWD1 WILD-TYPE" "CBWD1 WILD-TYPE" 
     TCGA-CG-5721      TCGA-CG-5722      TCGA-CG-5723      TCGA-CG-5724 
  "CBWD1 MUTATED" "CBWD1 WILD-TYPE" "CBWD1 WILD-TYPE" "CBWD1 WILD-TYPE" 
     TCGA-CG-5725      TCGA-CG-5726      TCGA-CG-5727      TCGA-CG-5728 
"CBWD1 WILD-TYPE"   "CBWD1 MUTATED" "CBWD1 WILD-TYPE" "CBWD1 WILD-TYPE" 
     TCGA-CG-5730      TCGA-CG-5732      TCGA-CG-5733      TCGA-CG-5734 
"CBWD1 WILD-TYPE" "CBWD1 WILD-TYPE" "CBWD1 WILD-TYPE" "CBWD1 WILD-TYPE" 
     TCGA-D7-5577      TCGA-D7-5578      TCGA-D7-5579      TCGA-D7-6518 
"CBWD1 WILD-TYPE" "CBWD1 WILD-TYPE" "CBWD1 WILD-TYPE" "CBWD1 WILD-TYPE" 
     TCGA-D7-6519      TCGA-D7-6520      TCGA-D7-6521      TCGA-D7-6522 
"CBWD1 WILD-TYPE" "CBWD1 WILD-TYPE" "CBWD1 WILD-TYPE" "CBWD1 WILD-TYPE" 
     TCGA-D7-6524      TCGA-D7-6525      TCGA-D7-6526      TCGA-D7-6527 
"CBWD1 WILD-TYPE" "CBWD1 WILD-TYPE" "CBWD1 WILD-TYPE" "CBWD1 WILD-TYPE" 
     TCGA-D7-6528      TCGA-D7-6815      TCGA-D7-6817      TCGA-D7-6818 
"CBWD1 WILD-TYPE" "CBWD1 WILD-TYPE" "CBWD1 WILD-TYPE" "CBWD1 WILD-TYPE" 
     TCGA-D7-6820      TCGA-D7-6822      TCGA-EQ-5647      TCGA-F1-6177 
"CBWD1 WILD-TYPE" "CBWD1 WILD-TYPE" "CBWD1 WILD-TYPE"   "CBWD1 MUTATED" 
     TCGA-F1-6874 
"CBWD1 WILD-TYPE" 
[1] "hr=" "1.9"
D4V2, continuous
D4V3, binary
[1] "tbl2"
                 cls
clus              [,1] [,2]
  CBWD1 MUTATED      8    6
  CBWD1 WILD-TYPE   38   64
        clus
vv       CBWD1 MUTATED CBWD1 WILD-TYPE
  FEMALE             8              38
  MALE               6              64
D4V4, multiclass
D4V5, multiclass
    clus
vv   CBWD1 MUTATED CBWD1 WILD-TYPE
  T1             3               1
  T2             2              44
  T3             3              38
  T4             4              11
D4V6, multiclass
    clus
vv   CBWD1 MUTATED CBWD1 WILD-TYPE
  N0             5              30
  N1             5              34
  N2             2              17
  N3             0              12
D4V7, multiclass
    clus
vv   CBWD1 MUTATED CBWD1 WILD-TYPE
  M0            11              88
  M1             2              11
  MX             1               3
D4V8, multiclass
     clus
vv    CBWD1 MUTATED CBWD1 WILD-TYPE
  I               3              15
  II              3              29
  III             1              28
  IV              4              17

Clustering(5) Variable = ARID1A MUTATION ANALYSIS
D5V1, survival
                  sevent
clus2               0  1
  ARID1A MUTATED   10  2
  ARID1A WILD-TYPE 61 12
  ARID1A MUTATED ARID1A WILD-TYPE 
              12               73 
  ARID1A MUTATED ARID1A WILD-TYPE 
               2               12 
$`ARID1A MUTATED`
TCGA-B7-5816 TCGA-BR-6452 TCGA-BR-6455 TCGA-BR-6707 TCGA-BR-6802 TCGA-CD-5803 
        5.62         0.95         1.41         0.99         0.76         0.07 
TCGA-CG-4465 TCGA-CG-4469 TCGA-D7-5577 TCGA-D7-6521 TCGA-D7-6524 TCGA-F1-6177 
        8.98         7.07         8.65         8.19         0.69         6.54 

$`ARID1A WILD-TYPE`
TCGA-B7-5818 TCGA-BR-6457 TCGA-BR-6458 TCGA-BR-6564 TCGA-BR-6565 TCGA-BR-6566 
        0.10         1.35         1.35         0.82         0.62         0.62 
TCGA-BR-6705 TCGA-BR-6706 TCGA-BR-6709 TCGA-BR-6710 TCGA-BR-6801 TCGA-BR-6803 
        1.71         2.17         1.22         0.66         1.12         0.66 
TCGA-BR-6852 TCGA-CD-5798 TCGA-CD-5799 TCGA-CD-5800 TCGA-CD-5801 TCGA-CD-5802 
        0.26         0.82         0.69         0.36         0.49         0.30 
TCGA-CD-5813 TCGA-CG-4300 TCGA-CG-4301 TCGA-CG-4304 TCGA-CG-4305 TCGA-CG-4306 
        0.39        20.02         3.02        27.02        15.95         1.02 
TCGA-CG-4436 TCGA-CG-4437 TCGA-CG-4438 TCGA-CG-4440 TCGA-CG-4441 TCGA-CG-4443 
       52.96         8.05        54.05         4.01        14.01        29.98 
TCGA-CG-4444 TCGA-CG-4449 TCGA-CG-4455 TCGA-CG-4460 TCGA-CG-4462 TCGA-CG-4466 
       47.05        19.07        12.03        21.99         1.02        18.94 
TCGA-CG-4472 TCGA-CG-4474 TCGA-CG-4477 TCGA-CG-5716 TCGA-CG-5717 TCGA-CG-5718 
       12.00         1.02         1.02         1.02         6.94         1.02 
TCGA-CG-5719 TCGA-CG-5720 TCGA-CG-5721 TCGA-CG-5722 TCGA-CG-5723 TCGA-CG-5724 
        1.02         0.99         5.98         0.95        70.06        12.03 
TCGA-CG-5725 TCGA-CG-5726 TCGA-CG-5727 TCGA-CG-5728 TCGA-CG-5730 TCGA-CG-5732 
       15.02        28.96        31.04        65.10         4.01        55.04 
TCGA-CG-5733 TCGA-CG-5734 TCGA-D7-5578 TCGA-D7-5579 TCGA-D7-6518 TCGA-D7-6519 
       21.07         7.99         3.58         4.54         9.80        15.65 
TCGA-D7-6520 TCGA-D7-6522 TCGA-D7-6525 TCGA-D7-6526 TCGA-D7-6527 TCGA-D7-6528 
        9.63         6.90         5.95         6.61         4.14         1.68 
TCGA-D7-6815 TCGA-D7-6817 TCGA-D7-6818 TCGA-D7-6820 TCGA-D7-6822 TCGA-EQ-5647 
        3.65         4.70         4.04         2.93         4.27         0.62 
TCGA-F1-6874 
        2.01 

  ARID1A MUTATED ARID1A WILD-TYPE 
            0.07             0.10 
  ARID1A MUTATED ARID1A WILD-TYPE 
            8.98            70.06 
  ARID1A MUTATED ARID1A WILD-TYPE 
           3.515            4.010 
[1] "0.1 - 9.0 (3.5)"  "0.1 - 70.1 (4.0)"
      TCGA-B7-5816       TCGA-B7-5818       TCGA-BR-6452       TCGA-BR-6455 
  "ARID1A MUTATED" "ARID1A WILD-TYPE"   "ARID1A MUTATED"   "ARID1A MUTATED" 
      TCGA-BR-6457       TCGA-BR-6458       TCGA-BR-6564       TCGA-BR-6565 
"ARID1A WILD-TYPE" "ARID1A WILD-TYPE" "ARID1A WILD-TYPE" "ARID1A WILD-TYPE" 
      TCGA-BR-6566       TCGA-BR-6705       TCGA-BR-6706       TCGA-BR-6707 
"ARID1A WILD-TYPE" "ARID1A WILD-TYPE" "ARID1A WILD-TYPE"   "ARID1A MUTATED" 
      TCGA-BR-6709       TCGA-BR-6710       TCGA-BR-6801       TCGA-BR-6802 
"ARID1A WILD-TYPE" "ARID1A WILD-TYPE" "ARID1A WILD-TYPE"   "ARID1A MUTATED" 
      TCGA-BR-6803       TCGA-BR-6852       TCGA-CD-5798       TCGA-CD-5799 
"ARID1A WILD-TYPE" "ARID1A WILD-TYPE" "ARID1A WILD-TYPE" "ARID1A WILD-TYPE" 
      TCGA-CD-5800       TCGA-CD-5801       TCGA-CD-5802       TCGA-CD-5803 
"ARID1A WILD-TYPE" "ARID1A WILD-TYPE" "ARID1A WILD-TYPE"   "ARID1A MUTATED" 
      TCGA-CD-5813       TCGA-CG-4300       TCGA-CG-4301       TCGA-CG-4304 
"ARID1A WILD-TYPE" "ARID1A WILD-TYPE" "ARID1A WILD-TYPE" "ARID1A WILD-TYPE" 
      TCGA-CG-4305       TCGA-CG-4306       TCGA-CG-4436       TCGA-CG-4437 
"ARID1A WILD-TYPE" "ARID1A WILD-TYPE" "ARID1A WILD-TYPE" "ARID1A WILD-TYPE" 
      TCGA-CG-4438       TCGA-CG-4440       TCGA-CG-4441       TCGA-CG-4443 
"ARID1A WILD-TYPE" "ARID1A WILD-TYPE" "ARID1A WILD-TYPE" "ARID1A WILD-TYPE" 
      TCGA-CG-4444       TCGA-CG-4449       TCGA-CG-4455       TCGA-CG-4460 
"ARID1A WILD-TYPE" "ARID1A WILD-TYPE" "ARID1A WILD-TYPE" "ARID1A WILD-TYPE" 
      TCGA-CG-4462       TCGA-CG-4465       TCGA-CG-4466       TCGA-CG-4469 
"ARID1A WILD-TYPE"   "ARID1A MUTATED" "ARID1A WILD-TYPE"   "ARID1A MUTATED" 
      TCGA-CG-4472       TCGA-CG-4474       TCGA-CG-4477       TCGA-CG-5716 
"ARID1A WILD-TYPE" "ARID1A WILD-TYPE" "ARID1A WILD-TYPE" "ARID1A WILD-TYPE" 
      TCGA-CG-5717       TCGA-CG-5718       TCGA-CG-5719       TCGA-CG-5720 
"ARID1A WILD-TYPE" "ARID1A WILD-TYPE" "ARID1A WILD-TYPE" "ARID1A WILD-TYPE" 
      TCGA-CG-5721       TCGA-CG-5722       TCGA-CG-5723       TCGA-CG-5724 
"ARID1A WILD-TYPE" "ARID1A WILD-TYPE" "ARID1A WILD-TYPE" "ARID1A WILD-TYPE" 
      TCGA-CG-5725       TCGA-CG-5726       TCGA-CG-5727       TCGA-CG-5728 
"ARID1A WILD-TYPE" "ARID1A WILD-TYPE" "ARID1A WILD-TYPE" "ARID1A WILD-TYPE" 
      TCGA-CG-5730       TCGA-CG-5732       TCGA-CG-5733       TCGA-CG-5734 
"ARID1A WILD-TYPE" "ARID1A WILD-TYPE" "ARID1A WILD-TYPE" "ARID1A WILD-TYPE" 
      TCGA-D7-5577       TCGA-D7-5578       TCGA-D7-5579       TCGA-D7-6518 
  "ARID1A MUTATED" "ARID1A WILD-TYPE" "ARID1A WILD-TYPE" "ARID1A WILD-TYPE" 
      TCGA-D7-6519       TCGA-D7-6520       TCGA-D7-6521       TCGA-D7-6522 
"ARID1A WILD-TYPE" "ARID1A WILD-TYPE"   "ARID1A MUTATED" "ARID1A WILD-TYPE" 
      TCGA-D7-6524       TCGA-D7-6525       TCGA-D7-6526       TCGA-D7-6527 
  "ARID1A MUTATED" "ARID1A WILD-TYPE" "ARID1A WILD-TYPE" "ARID1A WILD-TYPE" 
      TCGA-D7-6528       TCGA-D7-6815       TCGA-D7-6817       TCGA-D7-6818 
"ARID1A WILD-TYPE" "ARID1A WILD-TYPE" "ARID1A WILD-TYPE" "ARID1A WILD-TYPE" 
      TCGA-D7-6820       TCGA-D7-6822       TCGA-EQ-5647       TCGA-F1-6177 
"ARID1A WILD-TYPE" "ARID1A WILD-TYPE" "ARID1A WILD-TYPE"   "ARID1A MUTATED" 
      TCGA-F1-6874 
"ARID1A WILD-TYPE" 
      TCGA-B7-5816       TCGA-B7-5818       TCGA-BR-6452       TCGA-BR-6455 
  "ARID1A MUTATED" "ARID1A WILD-TYPE"   "ARID1A MUTATED"   "ARID1A MUTATED" 
      TCGA-BR-6457       TCGA-BR-6458       TCGA-BR-6564       TCGA-BR-6565 
"ARID1A WILD-TYPE" "ARID1A WILD-TYPE" "ARID1A WILD-TYPE" "ARID1A WILD-TYPE" 
      TCGA-BR-6566       TCGA-BR-6705       TCGA-BR-6706       TCGA-BR-6707 
"ARID1A WILD-TYPE" "ARID1A WILD-TYPE" "ARID1A WILD-TYPE"   "ARID1A MUTATED" 
      TCGA-BR-6709       TCGA-BR-6710       TCGA-BR-6801       TCGA-BR-6802 
"ARID1A WILD-TYPE" "ARID1A WILD-TYPE" "ARID1A WILD-TYPE"   "ARID1A MUTATED" 
      TCGA-BR-6803       TCGA-BR-6852       TCGA-CD-5798       TCGA-CD-5799 
"ARID1A WILD-TYPE" "ARID1A WILD-TYPE" "ARID1A WILD-TYPE" "ARID1A WILD-TYPE" 
      TCGA-CD-5800       TCGA-CD-5801       TCGA-CD-5802       TCGA-CD-5803 
"ARID1A WILD-TYPE" "ARID1A WILD-TYPE" "ARID1A WILD-TYPE"   "ARID1A MUTATED" 
      TCGA-CD-5813       TCGA-CG-4300       TCGA-CG-4301       TCGA-CG-4304 
"ARID1A WILD-TYPE" "ARID1A WILD-TYPE" "ARID1A WILD-TYPE" "ARID1A WILD-TYPE" 
      TCGA-CG-4305       TCGA-CG-4306       TCGA-CG-4436       TCGA-CG-4437 
"ARID1A WILD-TYPE" "ARID1A WILD-TYPE" "ARID1A WILD-TYPE" "ARID1A WILD-TYPE" 
      TCGA-CG-4438       TCGA-CG-4440       TCGA-CG-4441       TCGA-CG-4443 
"ARID1A WILD-TYPE" "ARID1A WILD-TYPE" "ARID1A WILD-TYPE" "ARID1A WILD-TYPE" 
      TCGA-CG-4444       TCGA-CG-4449       TCGA-CG-4455       TCGA-CG-4460 
"ARID1A WILD-TYPE" "ARID1A WILD-TYPE" "ARID1A WILD-TYPE" "ARID1A WILD-TYPE" 
      TCGA-CG-4462       TCGA-CG-4465       TCGA-CG-4466       TCGA-CG-4469 
"ARID1A WILD-TYPE"   "ARID1A MUTATED" "ARID1A WILD-TYPE"   "ARID1A MUTATED" 
      TCGA-CG-4472       TCGA-CG-4474       TCGA-CG-4477       TCGA-CG-5716 
"ARID1A WILD-TYPE" "ARID1A WILD-TYPE" "ARID1A WILD-TYPE" "ARID1A WILD-TYPE" 
      TCGA-CG-5717       TCGA-CG-5718       TCGA-CG-5719       TCGA-CG-5720 
"ARID1A WILD-TYPE" "ARID1A WILD-TYPE" "ARID1A WILD-TYPE" "ARID1A WILD-TYPE" 
      TCGA-CG-5721       TCGA-CG-5722       TCGA-CG-5723       TCGA-CG-5724 
"ARID1A WILD-TYPE" "ARID1A WILD-TYPE" "ARID1A WILD-TYPE" "ARID1A WILD-TYPE" 
      TCGA-CG-5725       TCGA-CG-5726       TCGA-CG-5727       TCGA-CG-5728 
"ARID1A WILD-TYPE" "ARID1A WILD-TYPE" "ARID1A WILD-TYPE" "ARID1A WILD-TYPE" 
      TCGA-CG-5730       TCGA-CG-5732       TCGA-CG-5733       TCGA-CG-5734 
"ARID1A WILD-TYPE" "ARID1A WILD-TYPE" "ARID1A WILD-TYPE" "ARID1A WILD-TYPE" 
      TCGA-D7-5577       TCGA-D7-5578       TCGA-D7-5579       TCGA-D7-6518 
  "ARID1A MUTATED" "ARID1A WILD-TYPE" "ARID1A WILD-TYPE" "ARID1A WILD-TYPE" 
      TCGA-D7-6519       TCGA-D7-6520       TCGA-D7-6521       TCGA-D7-6522 
"ARID1A WILD-TYPE" "ARID1A WILD-TYPE"   "ARID1A MUTATED" "ARID1A WILD-TYPE" 
      TCGA-D7-6524       TCGA-D7-6525       TCGA-D7-6526       TCGA-D7-6527 
  "ARID1A MUTATED" "ARID1A WILD-TYPE" "ARID1A WILD-TYPE" "ARID1A WILD-TYPE" 
      TCGA-D7-6528       TCGA-D7-6815       TCGA-D7-6817       TCGA-D7-6818 
"ARID1A WILD-TYPE" "ARID1A WILD-TYPE" "ARID1A WILD-TYPE" "ARID1A WILD-TYPE" 
      TCGA-D7-6820       TCGA-D7-6822       TCGA-EQ-5647       TCGA-F1-6177 
"ARID1A WILD-TYPE" "ARID1A WILD-TYPE" "ARID1A WILD-TYPE"   "ARID1A MUTATED" 
      TCGA-F1-6874 
"ARID1A WILD-TYPE" 
      TCGA-B7-5816       TCGA-B7-5818       TCGA-BR-6452       TCGA-BR-6455 
  "ARID1A MUTATED" "ARID1A WILD-TYPE"   "ARID1A MUTATED"   "ARID1A MUTATED" 
      TCGA-BR-6457       TCGA-BR-6458       TCGA-BR-6564       TCGA-BR-6565 
"ARID1A WILD-TYPE" "ARID1A WILD-TYPE" "ARID1A WILD-TYPE" "ARID1A WILD-TYPE" 
      TCGA-BR-6566       TCGA-BR-6705       TCGA-BR-6706       TCGA-BR-6707 
"ARID1A WILD-TYPE" "ARID1A WILD-TYPE" "ARID1A WILD-TYPE"   "ARID1A MUTATED" 
      TCGA-BR-6709       TCGA-BR-6710       TCGA-BR-6801       TCGA-BR-6802 
"ARID1A WILD-TYPE" "ARID1A WILD-TYPE" "ARID1A WILD-TYPE"   "ARID1A MUTATED" 
      TCGA-BR-6803       TCGA-BR-6852       TCGA-CD-5798       TCGA-CD-5799 
"ARID1A WILD-TYPE" "ARID1A WILD-TYPE" "ARID1A WILD-TYPE" "ARID1A WILD-TYPE" 
      TCGA-CD-5800       TCGA-CD-5801       TCGA-CD-5802       TCGA-CD-5803 
"ARID1A WILD-TYPE" "ARID1A WILD-TYPE" "ARID1A WILD-TYPE"   "ARID1A MUTATED" 
      TCGA-CD-5813       TCGA-CG-4300       TCGA-CG-4301       TCGA-CG-4304 
"ARID1A WILD-TYPE" "ARID1A WILD-TYPE" "ARID1A WILD-TYPE" "ARID1A WILD-TYPE" 
      TCGA-CG-4305       TCGA-CG-4306       TCGA-CG-4436       TCGA-CG-4437 
"ARID1A WILD-TYPE" "ARID1A WILD-TYPE" "ARID1A WILD-TYPE" "ARID1A WILD-TYPE" 
      TCGA-CG-4438       TCGA-CG-4440       TCGA-CG-4441       TCGA-CG-4443 
"ARID1A WILD-TYPE" "ARID1A WILD-TYPE" "ARID1A WILD-TYPE" "ARID1A WILD-TYPE" 
      TCGA-CG-4444       TCGA-CG-4449       TCGA-CG-4455       TCGA-CG-4460 
"ARID1A WILD-TYPE" "ARID1A WILD-TYPE" "ARID1A WILD-TYPE" "ARID1A WILD-TYPE" 
      TCGA-CG-4462       TCGA-CG-4465       TCGA-CG-4466       TCGA-CG-4469 
"ARID1A WILD-TYPE"   "ARID1A MUTATED" "ARID1A WILD-TYPE"   "ARID1A MUTATED" 
      TCGA-CG-4472       TCGA-CG-4474       TCGA-CG-4477       TCGA-CG-5716 
"ARID1A WILD-TYPE" "ARID1A WILD-TYPE" "ARID1A WILD-TYPE" "ARID1A WILD-TYPE" 
      TCGA-CG-5717       TCGA-CG-5718       TCGA-CG-5719       TCGA-CG-5720 
"ARID1A WILD-TYPE" "ARID1A WILD-TYPE" "ARID1A WILD-TYPE" "ARID1A WILD-TYPE" 
      TCGA-CG-5721       TCGA-CG-5722       TCGA-CG-5723       TCGA-CG-5724 
"ARID1A WILD-TYPE" "ARID1A WILD-TYPE" "ARID1A WILD-TYPE" "ARID1A WILD-TYPE" 
      TCGA-CG-5725       TCGA-CG-5726       TCGA-CG-5727       TCGA-CG-5728 
"ARID1A WILD-TYPE" "ARID1A WILD-TYPE" "ARID1A WILD-TYPE" "ARID1A WILD-TYPE" 
      TCGA-CG-5730       TCGA-CG-5732       TCGA-CG-5733       TCGA-CG-5734 
"ARID1A WILD-TYPE" "ARID1A WILD-TYPE" "ARID1A WILD-TYPE" "ARID1A WILD-TYPE" 
      TCGA-D7-5577       TCGA-D7-5578       TCGA-D7-5579       TCGA-D7-6518 
  "ARID1A MUTATED" "ARID1A WILD-TYPE" "ARID1A WILD-TYPE" "ARID1A WILD-TYPE" 
      TCGA-D7-6519       TCGA-D7-6520       TCGA-D7-6521       TCGA-D7-6522 
"ARID1A WILD-TYPE" "ARID1A WILD-TYPE"   "ARID1A MUTATED" "ARID1A WILD-TYPE" 
      TCGA-D7-6524       TCGA-D7-6525       TCGA-D7-6526       TCGA-D7-6527 
  "ARID1A MUTATED" "ARID1A WILD-TYPE" "ARID1A WILD-TYPE" "ARID1A WILD-TYPE" 
      TCGA-D7-6528       TCGA-D7-6815       TCGA-D7-6817       TCGA-D7-6818 
"ARID1A WILD-TYPE" "ARID1A WILD-TYPE" "ARID1A WILD-TYPE" "ARID1A WILD-TYPE" 
      TCGA-D7-6820       TCGA-D7-6822       TCGA-EQ-5647       TCGA-F1-6177 
"ARID1A WILD-TYPE" "ARID1A WILD-TYPE" "ARID1A WILD-TYPE"   "ARID1A MUTATED" 
      TCGA-F1-6874 
"ARID1A WILD-TYPE" 
[1] "hr=" "2.6"
D5V2, continuous
D5V3, binary
[1] "tbl2"
                  cls
clus               [,1] [,2]
  ARID1A MUTATED     13    9
  ARID1A WILD-TYPE   33   61
        clus
vv       ARID1A MUTATED ARID1A WILD-TYPE
  FEMALE             13               33
  MALE                9               61
D5V4, multiclass
D5V5, multiclass
    clus
vv   ARID1A MUTATED ARID1A WILD-TYPE
  T1              2                2
  T2              5               41
  T3             10               31
  T4              3               12
D5V6, multiclass
    clus
vv   ARID1A MUTATED ARID1A WILD-TYPE
  N0              6               29
  N1              8               31
  N2              1               18
  N3              3                9
D5V7, multiclass
    clus
vv   ARID1A MUTATED ARID1A WILD-TYPE
  M0             18               81
  M1              1               12
  MX              3                1
D5V8, multiclass
     clus
vv    ARID1A MUTATED ARID1A WILD-TYPE
  I                2               16
  II               4               28
  III              9               20
  IV               2               19

Clustering(6) Variable = PGM5 MUTATION ANALYSIS
D6V1, survival
                sevent
clus2             0  1
  PGM5 MUTATED    6  3
  PGM5 WILD-TYPE 65 11
  PGM5 MUTATED PGM5 WILD-TYPE 
             9             76 
  PGM5 MUTATED PGM5 WILD-TYPE 
             3             11 
$`PGM5 MUTATED`
TCGA-BR-6452 TCGA-CG-4305 TCGA-CG-4460 TCGA-CG-4462 TCGA-CG-5726 TCGA-CG-5728 
        0.95        15.95        21.99         1.02        28.96        65.10 
TCGA-CG-5733 TCGA-D7-6521 TCGA-F1-6177 
       21.07         8.19         6.54 

$`PGM5 WILD-TYPE`
TCGA-B7-5816 TCGA-B7-5818 TCGA-BR-6455 TCGA-BR-6457 TCGA-BR-6458 TCGA-BR-6564 
        5.62         0.10         1.41         1.35         1.35         0.82 
TCGA-BR-6565 TCGA-BR-6566 TCGA-BR-6705 TCGA-BR-6706 TCGA-BR-6707 TCGA-BR-6709 
        0.62         0.62         1.71         2.17         0.99         1.22 
TCGA-BR-6710 TCGA-BR-6801 TCGA-BR-6802 TCGA-BR-6803 TCGA-BR-6852 TCGA-CD-5798 
        0.66         1.12         0.76         0.66         0.26         0.82 
TCGA-CD-5799 TCGA-CD-5800 TCGA-CD-5801 TCGA-CD-5802 TCGA-CD-5803 TCGA-CD-5813 
        0.69         0.36         0.49         0.30         0.07         0.39 
TCGA-CG-4300 TCGA-CG-4301 TCGA-CG-4304 TCGA-CG-4306 TCGA-CG-4436 TCGA-CG-4437 
       20.02         3.02        27.02         1.02        52.96         8.05 
TCGA-CG-4438 TCGA-CG-4440 TCGA-CG-4441 TCGA-CG-4443 TCGA-CG-4444 TCGA-CG-4449 
       54.05         4.01        14.01        29.98        47.05        19.07 
TCGA-CG-4455 TCGA-CG-4465 TCGA-CG-4466 TCGA-CG-4469 TCGA-CG-4472 TCGA-CG-4474 
       12.03         8.98        18.94         7.07        12.00         1.02 
TCGA-CG-4477 TCGA-CG-5716 TCGA-CG-5717 TCGA-CG-5718 TCGA-CG-5719 TCGA-CG-5720 
        1.02         1.02         6.94         1.02         1.02         0.99 
TCGA-CG-5721 TCGA-CG-5722 TCGA-CG-5723 TCGA-CG-5724 TCGA-CG-5725 TCGA-CG-5727 
        5.98         0.95        70.06        12.03        15.02        31.04 
TCGA-CG-5730 TCGA-CG-5732 TCGA-CG-5734 TCGA-D7-5577 TCGA-D7-5578 TCGA-D7-5579 
        4.01        55.04         7.99         8.65         3.58         4.54 
TCGA-D7-6518 TCGA-D7-6519 TCGA-D7-6520 TCGA-D7-6522 TCGA-D7-6524 TCGA-D7-6525 
        9.80        15.65         9.63         6.90         0.69         5.95 
TCGA-D7-6526 TCGA-D7-6527 TCGA-D7-6528 TCGA-D7-6815 TCGA-D7-6817 TCGA-D7-6818 
        6.61         4.14         1.68         3.65         4.70         4.04 
TCGA-D7-6820 TCGA-D7-6822 TCGA-EQ-5647 TCGA-F1-6874 
        2.93         4.27         0.62         2.01 

  PGM5 MUTATED PGM5 WILD-TYPE 
          0.95           0.07 
  PGM5 MUTATED PGM5 WILD-TYPE 
         65.10          70.06 
  PGM5 MUTATED PGM5 WILD-TYPE 
        15.950          3.615 
[1] "0.9 - 65.1 (15.9)" "0.1 - 70.1 (3.6)" 
    TCGA-B7-5816     TCGA-B7-5818     TCGA-BR-6452     TCGA-BR-6455 
"PGM5 WILD-TYPE" "PGM5 WILD-TYPE"   "PGM5 MUTATED" "PGM5 WILD-TYPE" 
    TCGA-BR-6457     TCGA-BR-6458     TCGA-BR-6564     TCGA-BR-6565 
"PGM5 WILD-TYPE" "PGM5 WILD-TYPE" "PGM5 WILD-TYPE" "PGM5 WILD-TYPE" 
    TCGA-BR-6566     TCGA-BR-6705     TCGA-BR-6706     TCGA-BR-6707 
"PGM5 WILD-TYPE" "PGM5 WILD-TYPE" "PGM5 WILD-TYPE" "PGM5 WILD-TYPE" 
    TCGA-BR-6709     TCGA-BR-6710     TCGA-BR-6801     TCGA-BR-6802 
"PGM5 WILD-TYPE" "PGM5 WILD-TYPE" "PGM5 WILD-TYPE" "PGM5 WILD-TYPE" 
    TCGA-BR-6803     TCGA-BR-6852     TCGA-CD-5798     TCGA-CD-5799 
"PGM5 WILD-TYPE" "PGM5 WILD-TYPE" "PGM5 WILD-TYPE" "PGM5 WILD-TYPE" 
    TCGA-CD-5800     TCGA-CD-5801     TCGA-CD-5802     TCGA-CD-5803 
"PGM5 WILD-TYPE" "PGM5 WILD-TYPE" "PGM5 WILD-TYPE" "PGM5 WILD-TYPE" 
    TCGA-CD-5813     TCGA-CG-4300     TCGA-CG-4301     TCGA-CG-4304 
"PGM5 WILD-TYPE" "PGM5 WILD-TYPE" "PGM5 WILD-TYPE" "PGM5 WILD-TYPE" 
    TCGA-CG-4305     TCGA-CG-4306     TCGA-CG-4436     TCGA-CG-4437 
  "PGM5 MUTATED" "PGM5 WILD-TYPE" "PGM5 WILD-TYPE" "PGM5 WILD-TYPE" 
    TCGA-CG-4438     TCGA-CG-4440     TCGA-CG-4441     TCGA-CG-4443 
"PGM5 WILD-TYPE" "PGM5 WILD-TYPE" "PGM5 WILD-TYPE" "PGM5 WILD-TYPE" 
    TCGA-CG-4444     TCGA-CG-4449     TCGA-CG-4455     TCGA-CG-4460 
"PGM5 WILD-TYPE" "PGM5 WILD-TYPE" "PGM5 WILD-TYPE"   "PGM5 MUTATED" 
    TCGA-CG-4462     TCGA-CG-4465     TCGA-CG-4466     TCGA-CG-4469 
  "PGM5 MUTATED" "PGM5 WILD-TYPE" "PGM5 WILD-TYPE" "PGM5 WILD-TYPE" 
    TCGA-CG-4472     TCGA-CG-4474     TCGA-CG-4477     TCGA-CG-5716 
"PGM5 WILD-TYPE" "PGM5 WILD-TYPE" "PGM5 WILD-TYPE" "PGM5 WILD-TYPE" 
    TCGA-CG-5717     TCGA-CG-5718     TCGA-CG-5719     TCGA-CG-5720 
"PGM5 WILD-TYPE" "PGM5 WILD-TYPE" "PGM5 WILD-TYPE" "PGM5 WILD-TYPE" 
    TCGA-CG-5721     TCGA-CG-5722     TCGA-CG-5723     TCGA-CG-5724 
"PGM5 WILD-TYPE" "PGM5 WILD-TYPE" "PGM5 WILD-TYPE" "PGM5 WILD-TYPE" 
    TCGA-CG-5725     TCGA-CG-5726     TCGA-CG-5727     TCGA-CG-5728 
"PGM5 WILD-TYPE"   "PGM5 MUTATED" "PGM5 WILD-TYPE"   "PGM5 MUTATED" 
    TCGA-CG-5730     TCGA-CG-5732     TCGA-CG-5733     TCGA-CG-5734 
"PGM5 WILD-TYPE" "PGM5 WILD-TYPE"   "PGM5 MUTATED" "PGM5 WILD-TYPE" 
    TCGA-D7-5577     TCGA-D7-5578     TCGA-D7-5579     TCGA-D7-6518 
"PGM5 WILD-TYPE" "PGM5 WILD-TYPE" "PGM5 WILD-TYPE" "PGM5 WILD-TYPE" 
    TCGA-D7-6519     TCGA-D7-6520     TCGA-D7-6521     TCGA-D7-6522 
"PGM5 WILD-TYPE" "PGM5 WILD-TYPE"   "PGM5 MUTATED" "PGM5 WILD-TYPE" 
    TCGA-D7-6524     TCGA-D7-6525     TCGA-D7-6526     TCGA-D7-6527 
"PGM5 WILD-TYPE" "PGM5 WILD-TYPE" "PGM5 WILD-TYPE" "PGM5 WILD-TYPE" 
    TCGA-D7-6528     TCGA-D7-6815     TCGA-D7-6817     TCGA-D7-6818 
"PGM5 WILD-TYPE" "PGM5 WILD-TYPE" "PGM5 WILD-TYPE" "PGM5 WILD-TYPE" 
    TCGA-D7-6820     TCGA-D7-6822     TCGA-EQ-5647     TCGA-F1-6177 
"PGM5 WILD-TYPE" "PGM5 WILD-TYPE" "PGM5 WILD-TYPE"   "PGM5 MUTATED" 
    TCGA-F1-6874 
"PGM5 WILD-TYPE" 
    TCGA-B7-5816     TCGA-B7-5818     TCGA-BR-6452     TCGA-BR-6455 
"PGM5 WILD-TYPE" "PGM5 WILD-TYPE"   "PGM5 MUTATED" "PGM5 WILD-TYPE" 
    TCGA-BR-6457     TCGA-BR-6458     TCGA-BR-6564     TCGA-BR-6565 
"PGM5 WILD-TYPE" "PGM5 WILD-TYPE" "PGM5 WILD-TYPE" "PGM5 WILD-TYPE" 
    TCGA-BR-6566     TCGA-BR-6705     TCGA-BR-6706     TCGA-BR-6707 
"PGM5 WILD-TYPE" "PGM5 WILD-TYPE" "PGM5 WILD-TYPE" "PGM5 WILD-TYPE" 
    TCGA-BR-6709     TCGA-BR-6710     TCGA-BR-6801     TCGA-BR-6802 
"PGM5 WILD-TYPE" "PGM5 WILD-TYPE" "PGM5 WILD-TYPE" "PGM5 WILD-TYPE" 
    TCGA-BR-6803     TCGA-BR-6852     TCGA-CD-5798     TCGA-CD-5799 
"PGM5 WILD-TYPE" "PGM5 WILD-TYPE" "PGM5 WILD-TYPE" "PGM5 WILD-TYPE" 
    TCGA-CD-5800     TCGA-CD-5801     TCGA-CD-5802     TCGA-CD-5803 
"PGM5 WILD-TYPE" "PGM5 WILD-TYPE" "PGM5 WILD-TYPE" "PGM5 WILD-TYPE" 
    TCGA-CD-5813     TCGA-CG-4300     TCGA-CG-4301     TCGA-CG-4304 
"PGM5 WILD-TYPE" "PGM5 WILD-TYPE" "PGM5 WILD-TYPE" "PGM5 WILD-TYPE" 
    TCGA-CG-4305     TCGA-CG-4306     TCGA-CG-4436     TCGA-CG-4437 
  "PGM5 MUTATED" "PGM5 WILD-TYPE" "PGM5 WILD-TYPE" "PGM5 WILD-TYPE" 
    TCGA-CG-4438     TCGA-CG-4440     TCGA-CG-4441     TCGA-CG-4443 
"PGM5 WILD-TYPE" "PGM5 WILD-TYPE" "PGM5 WILD-TYPE" "PGM5 WILD-TYPE" 
    TCGA-CG-4444     TCGA-CG-4449     TCGA-CG-4455     TCGA-CG-4460 
"PGM5 WILD-TYPE" "PGM5 WILD-TYPE" "PGM5 WILD-TYPE"   "PGM5 MUTATED" 
    TCGA-CG-4462     TCGA-CG-4465     TCGA-CG-4466     TCGA-CG-4469 
  "PGM5 MUTATED" "PGM5 WILD-TYPE" "PGM5 WILD-TYPE" "PGM5 WILD-TYPE" 
    TCGA-CG-4472     TCGA-CG-4474     TCGA-CG-4477     TCGA-CG-5716 
"PGM5 WILD-TYPE" "PGM5 WILD-TYPE" "PGM5 WILD-TYPE" "PGM5 WILD-TYPE" 
    TCGA-CG-5717     TCGA-CG-5718     TCGA-CG-5719     TCGA-CG-5720 
"PGM5 WILD-TYPE" "PGM5 WILD-TYPE" "PGM5 WILD-TYPE" "PGM5 WILD-TYPE" 
    TCGA-CG-5721     TCGA-CG-5722     TCGA-CG-5723     TCGA-CG-5724 
"PGM5 WILD-TYPE" "PGM5 WILD-TYPE" "PGM5 WILD-TYPE" "PGM5 WILD-TYPE" 
    TCGA-CG-5725     TCGA-CG-5726     TCGA-CG-5727     TCGA-CG-5728 
"PGM5 WILD-TYPE"   "PGM5 MUTATED" "PGM5 WILD-TYPE"   "PGM5 MUTATED" 
    TCGA-CG-5730     TCGA-CG-5732     TCGA-CG-5733     TCGA-CG-5734 
"PGM5 WILD-TYPE" "PGM5 WILD-TYPE"   "PGM5 MUTATED" "PGM5 WILD-TYPE" 
    TCGA-D7-5577     TCGA-D7-5578     TCGA-D7-5579     TCGA-D7-6518 
"PGM5 WILD-TYPE" "PGM5 WILD-TYPE" "PGM5 WILD-TYPE" "PGM5 WILD-TYPE" 
    TCGA-D7-6519     TCGA-D7-6520     TCGA-D7-6521     TCGA-D7-6522 
"PGM5 WILD-TYPE" "PGM5 WILD-TYPE"   "PGM5 MUTATED" "PGM5 WILD-TYPE" 
    TCGA-D7-6524     TCGA-D7-6525     TCGA-D7-6526     TCGA-D7-6527 
"PGM5 WILD-TYPE" "PGM5 WILD-TYPE" "PGM5 WILD-TYPE" "PGM5 WILD-TYPE" 
    TCGA-D7-6528     TCGA-D7-6815     TCGA-D7-6817     TCGA-D7-6818 
"PGM5 WILD-TYPE" "PGM5 WILD-TYPE" "PGM5 WILD-TYPE" "PGM5 WILD-TYPE" 
    TCGA-D7-6820     TCGA-D7-6822     TCGA-EQ-5647     TCGA-F1-6177 
"PGM5 WILD-TYPE" "PGM5 WILD-TYPE" "PGM5 WILD-TYPE"   "PGM5 MUTATED" 
    TCGA-F1-6874 
"PGM5 WILD-TYPE" 
    TCGA-B7-5816     TCGA-B7-5818     TCGA-BR-6452     TCGA-BR-6455 
"PGM5 WILD-TYPE" "PGM5 WILD-TYPE"   "PGM5 MUTATED" "PGM5 WILD-TYPE" 
    TCGA-BR-6457     TCGA-BR-6458     TCGA-BR-6564     TCGA-BR-6565 
"PGM5 WILD-TYPE" "PGM5 WILD-TYPE" "PGM5 WILD-TYPE" "PGM5 WILD-TYPE" 
    TCGA-BR-6566     TCGA-BR-6705     TCGA-BR-6706     TCGA-BR-6707 
"PGM5 WILD-TYPE" "PGM5 WILD-TYPE" "PGM5 WILD-TYPE" "PGM5 WILD-TYPE" 
    TCGA-BR-6709     TCGA-BR-6710     TCGA-BR-6801     TCGA-BR-6802 
"PGM5 WILD-TYPE" "PGM5 WILD-TYPE" "PGM5 WILD-TYPE" "PGM5 WILD-TYPE" 
    TCGA-BR-6803     TCGA-BR-6852     TCGA-CD-5798     TCGA-CD-5799 
"PGM5 WILD-TYPE" "PGM5 WILD-TYPE" "PGM5 WILD-TYPE" "PGM5 WILD-TYPE" 
    TCGA-CD-5800     TCGA-CD-5801     TCGA-CD-5802     TCGA-CD-5803 
"PGM5 WILD-TYPE" "PGM5 WILD-TYPE" "PGM5 WILD-TYPE" "PGM5 WILD-TYPE" 
    TCGA-CD-5813     TCGA-CG-4300     TCGA-CG-4301     TCGA-CG-4304 
"PGM5 WILD-TYPE" "PGM5 WILD-TYPE" "PGM5 WILD-TYPE" "PGM5 WILD-TYPE" 
    TCGA-CG-4305     TCGA-CG-4306     TCGA-CG-4436     TCGA-CG-4437 
  "PGM5 MUTATED" "PGM5 WILD-TYPE" "PGM5 WILD-TYPE" "PGM5 WILD-TYPE" 
    TCGA-CG-4438     TCGA-CG-4440     TCGA-CG-4441     TCGA-CG-4443 
"PGM5 WILD-TYPE" "PGM5 WILD-TYPE" "PGM5 WILD-TYPE" "PGM5 WILD-TYPE" 
    TCGA-CG-4444     TCGA-CG-4449     TCGA-CG-4455     TCGA-CG-4460 
"PGM5 WILD-TYPE" "PGM5 WILD-TYPE" "PGM5 WILD-TYPE"   "PGM5 MUTATED" 
    TCGA-CG-4462     TCGA-CG-4465     TCGA-CG-4466     TCGA-CG-4469 
  "PGM5 MUTATED" "PGM5 WILD-TYPE" "PGM5 WILD-TYPE" "PGM5 WILD-TYPE" 
    TCGA-CG-4472     TCGA-CG-4474     TCGA-CG-4477     TCGA-CG-5716 
"PGM5 WILD-TYPE" "PGM5 WILD-TYPE" "PGM5 WILD-TYPE" "PGM5 WILD-TYPE" 
    TCGA-CG-5717     TCGA-CG-5718     TCGA-CG-5719     TCGA-CG-5720 
"PGM5 WILD-TYPE" "PGM5 WILD-TYPE" "PGM5 WILD-TYPE" "PGM5 WILD-TYPE" 
    TCGA-CG-5721     TCGA-CG-5722     TCGA-CG-5723     TCGA-CG-5724 
"PGM5 WILD-TYPE" "PGM5 WILD-TYPE" "PGM5 WILD-TYPE" "PGM5 WILD-TYPE" 
    TCGA-CG-5725     TCGA-CG-5726     TCGA-CG-5727     TCGA-CG-5728 
"PGM5 WILD-TYPE"   "PGM5 MUTATED" "PGM5 WILD-TYPE"   "PGM5 MUTATED" 
    TCGA-CG-5730     TCGA-CG-5732     TCGA-CG-5733     TCGA-CG-5734 
"PGM5 WILD-TYPE" "PGM5 WILD-TYPE"   "PGM5 MUTATED" "PGM5 WILD-TYPE" 
    TCGA-D7-5577     TCGA-D7-5578     TCGA-D7-5579     TCGA-D7-6518 
"PGM5 WILD-TYPE" "PGM5 WILD-TYPE" "PGM5 WILD-TYPE" "PGM5 WILD-TYPE" 
    TCGA-D7-6519     TCGA-D7-6520     TCGA-D7-6521     TCGA-D7-6522 
"PGM5 WILD-TYPE" "PGM5 WILD-TYPE"   "PGM5 MUTATED" "PGM5 WILD-TYPE" 
    TCGA-D7-6524     TCGA-D7-6525     TCGA-D7-6526     TCGA-D7-6527 
"PGM5 WILD-TYPE" "PGM5 WILD-TYPE" "PGM5 WILD-TYPE" "PGM5 WILD-TYPE" 
    TCGA-D7-6528     TCGA-D7-6815     TCGA-D7-6817     TCGA-D7-6818 
"PGM5 WILD-TYPE" "PGM5 WILD-TYPE" "PGM5 WILD-TYPE" "PGM5 WILD-TYPE" 
    TCGA-D7-6820     TCGA-D7-6822     TCGA-EQ-5647     TCGA-F1-6177 
"PGM5 WILD-TYPE" "PGM5 WILD-TYPE" "PGM5 WILD-TYPE"   "PGM5 MUTATED" 
    TCGA-F1-6874 
"PGM5 WILD-TYPE" 
[1] "hr=" "1"  
D6V2, continuous
D6V3, binary
[1] "tbl2"
                cls
clus             [,1] [,2]
  PGM5 MUTATED     11    5
  PGM5 WILD-TYPE   35   65
        clus
vv       PGM5 MUTATED PGM5 WILD-TYPE
  FEMALE           11             35
  MALE              5             65
D6V4, multiclass
D6V5, multiclass
    clus
vv   PGM5 MUTATED PGM5 WILD-TYPE
  T1            3              1
  T2            6             40
  T3            2             39
  T4            3             12
D6V6, multiclass
    clus
vv   PGM5 MUTATED PGM5 WILD-TYPE
  N0            5             30
  N1            4             35
  N2            3             16
  N3            1             11
D6V7, multiclass
    clus
vv   PGM5 MUTATED PGM5 WILD-TYPE
  M0           13             86
  M1            2             11
  MX            1              3
D6V8, multiclass
     clus
vv    PGM5 MUTATED PGM5 WILD-TYPE
  I              4             14
  II             2             30
  III            3             26
  IV             3             18

Clustering(7) Variable = ACVR2A MUTATION ANALYSIS
D7V1, survival
                  sevent
clus2               0  1
  ACVR2A MUTATED    3  4
  ACVR2A WILD-TYPE 68 10
  ACVR2A MUTATED ACVR2A WILD-TYPE 
               7               78 
  ACVR2A MUTATED ACVR2A WILD-TYPE 
               4               10 
$`ACVR2A MUTATED`
TCGA-BR-6566 TCGA-BR-6852 TCGA-CG-4306 TCGA-CG-4465 TCGA-CG-5720 TCGA-CG-5726 
        0.62         0.26         1.02         8.98         0.99        28.96 
TCGA-F1-6874 
        2.01 

$`ACVR2A WILD-TYPE`
TCGA-B7-5816 TCGA-B7-5818 TCGA-BR-6452 TCGA-BR-6455 TCGA-BR-6457 TCGA-BR-6458 
        5.62         0.10         0.95         1.41         1.35         1.35 
TCGA-BR-6564 TCGA-BR-6565 TCGA-BR-6705 TCGA-BR-6706 TCGA-BR-6707 TCGA-BR-6709 
        0.82         0.62         1.71         2.17         0.99         1.22 
TCGA-BR-6710 TCGA-BR-6801 TCGA-BR-6802 TCGA-BR-6803 TCGA-CD-5798 TCGA-CD-5799 
        0.66         1.12         0.76         0.66         0.82         0.69 
TCGA-CD-5800 TCGA-CD-5801 TCGA-CD-5802 TCGA-CD-5803 TCGA-CD-5813 TCGA-CG-4300 
        0.36         0.49         0.30         0.07         0.39        20.02 
TCGA-CG-4301 TCGA-CG-4304 TCGA-CG-4305 TCGA-CG-4436 TCGA-CG-4437 TCGA-CG-4438 
        3.02        27.02        15.95        52.96         8.05        54.05 
TCGA-CG-4440 TCGA-CG-4441 TCGA-CG-4443 TCGA-CG-4444 TCGA-CG-4449 TCGA-CG-4455 
        4.01        14.01        29.98        47.05        19.07        12.03 
TCGA-CG-4460 TCGA-CG-4462 TCGA-CG-4466 TCGA-CG-4469 TCGA-CG-4472 TCGA-CG-4474 
       21.99         1.02        18.94         7.07        12.00         1.02 
TCGA-CG-4477 TCGA-CG-5716 TCGA-CG-5717 TCGA-CG-5718 TCGA-CG-5719 TCGA-CG-5721 
        1.02         1.02         6.94         1.02         1.02         5.98 
TCGA-CG-5722 TCGA-CG-5723 TCGA-CG-5724 TCGA-CG-5725 TCGA-CG-5727 TCGA-CG-5728 
        0.95        70.06        12.03        15.02        31.04        65.10 
TCGA-CG-5730 TCGA-CG-5732 TCGA-CG-5733 TCGA-CG-5734 TCGA-D7-5577 TCGA-D7-5578 
        4.01        55.04        21.07         7.99         8.65         3.58 
TCGA-D7-5579 TCGA-D7-6518 TCGA-D7-6519 TCGA-D7-6520 TCGA-D7-6521 TCGA-D7-6522 
        4.54         9.80        15.65         9.63         8.19         6.90 
TCGA-D7-6524 TCGA-D7-6525 TCGA-D7-6526 TCGA-D7-6527 TCGA-D7-6528 TCGA-D7-6815 
        0.69         5.95         6.61         4.14         1.68         3.65 
TCGA-D7-6817 TCGA-D7-6818 TCGA-D7-6820 TCGA-D7-6822 TCGA-EQ-5647 TCGA-F1-6177 
        4.70         4.04         2.93         4.27         0.62         6.54 

  ACVR2A MUTATED ACVR2A WILD-TYPE 
            0.26             0.07 
  ACVR2A MUTATED ACVR2A WILD-TYPE 
           28.96            70.06 
  ACVR2A MUTATED ACVR2A WILD-TYPE 
            1.02             4.09 
[1] "0.3 - 29.0 (1.0)" "0.1 - 70.1 (4.1)"
      TCGA-B7-5816       TCGA-B7-5818       TCGA-BR-6452       TCGA-BR-6455 
"ACVR2A WILD-TYPE" "ACVR2A WILD-TYPE" "ACVR2A WILD-TYPE" "ACVR2A WILD-TYPE" 
      TCGA-BR-6457       TCGA-BR-6458       TCGA-BR-6564       TCGA-BR-6565 
"ACVR2A WILD-TYPE" "ACVR2A WILD-TYPE" "ACVR2A WILD-TYPE" "ACVR2A WILD-TYPE" 
      TCGA-BR-6566       TCGA-BR-6705       TCGA-BR-6706       TCGA-BR-6707 
  "ACVR2A MUTATED" "ACVR2A WILD-TYPE" "ACVR2A WILD-TYPE" "ACVR2A WILD-TYPE" 
      TCGA-BR-6709       TCGA-BR-6710       TCGA-BR-6801       TCGA-BR-6802 
"ACVR2A WILD-TYPE" "ACVR2A WILD-TYPE" "ACVR2A WILD-TYPE" "ACVR2A WILD-TYPE" 
      TCGA-BR-6803       TCGA-BR-6852       TCGA-CD-5798       TCGA-CD-5799 
"ACVR2A WILD-TYPE"   "ACVR2A MUTATED" "ACVR2A WILD-TYPE" "ACVR2A WILD-TYPE" 
      TCGA-CD-5800       TCGA-CD-5801       TCGA-CD-5802       TCGA-CD-5803 
"ACVR2A WILD-TYPE" "ACVR2A WILD-TYPE" "ACVR2A WILD-TYPE" "ACVR2A WILD-TYPE" 
      TCGA-CD-5813       TCGA-CG-4300       TCGA-CG-4301       TCGA-CG-4304 
"ACVR2A WILD-TYPE" "ACVR2A WILD-TYPE" "ACVR2A WILD-TYPE" "ACVR2A WILD-TYPE" 
      TCGA-CG-4305       TCGA-CG-4306       TCGA-CG-4436       TCGA-CG-4437 
"ACVR2A WILD-TYPE"   "ACVR2A MUTATED" "ACVR2A WILD-TYPE" "ACVR2A WILD-TYPE" 
      TCGA-CG-4438       TCGA-CG-4440       TCGA-CG-4441       TCGA-CG-4443 
"ACVR2A WILD-TYPE" "ACVR2A WILD-TYPE" "ACVR2A WILD-TYPE" "ACVR2A WILD-TYPE" 
      TCGA-CG-4444       TCGA-CG-4449       TCGA-CG-4455       TCGA-CG-4460 
"ACVR2A WILD-TYPE" "ACVR2A WILD-TYPE" "ACVR2A WILD-TYPE" "ACVR2A WILD-TYPE" 
      TCGA-CG-4462       TCGA-CG-4465       TCGA-CG-4466       TCGA-CG-4469 
"ACVR2A WILD-TYPE"   "ACVR2A MUTATED" "ACVR2A WILD-TYPE" "ACVR2A WILD-TYPE" 
      TCGA-CG-4472       TCGA-CG-4474       TCGA-CG-4477       TCGA-CG-5716 
"ACVR2A WILD-TYPE" "ACVR2A WILD-TYPE" "ACVR2A WILD-TYPE" "ACVR2A WILD-TYPE" 
      TCGA-CG-5717       TCGA-CG-5718       TCGA-CG-5719       TCGA-CG-5720 
"ACVR2A WILD-TYPE" "ACVR2A WILD-TYPE" "ACVR2A WILD-TYPE"   "ACVR2A MUTATED" 
      TCGA-CG-5721       TCGA-CG-5722       TCGA-CG-5723       TCGA-CG-5724 
"ACVR2A WILD-TYPE" "ACVR2A WILD-TYPE" "ACVR2A WILD-TYPE" "ACVR2A WILD-TYPE" 
      TCGA-CG-5725       TCGA-CG-5726       TCGA-CG-5727       TCGA-CG-5728 
"ACVR2A WILD-TYPE"   "ACVR2A MUTATED" "ACVR2A WILD-TYPE" "ACVR2A WILD-TYPE" 
      TCGA-CG-5730       TCGA-CG-5732       TCGA-CG-5733       TCGA-CG-5734 
"ACVR2A WILD-TYPE" "ACVR2A WILD-TYPE" "ACVR2A WILD-TYPE" "ACVR2A WILD-TYPE" 
      TCGA-D7-5577       TCGA-D7-5578       TCGA-D7-5579       TCGA-D7-6518 
"ACVR2A WILD-TYPE" "ACVR2A WILD-TYPE" "ACVR2A WILD-TYPE" "ACVR2A WILD-TYPE" 
      TCGA-D7-6519       TCGA-D7-6520       TCGA-D7-6521       TCGA-D7-6522 
"ACVR2A WILD-TYPE" "ACVR2A WILD-TYPE" "ACVR2A WILD-TYPE" "ACVR2A WILD-TYPE" 
      TCGA-D7-6524       TCGA-D7-6525       TCGA-D7-6526       TCGA-D7-6527 
"ACVR2A WILD-TYPE" "ACVR2A WILD-TYPE" "ACVR2A WILD-TYPE" "ACVR2A WILD-TYPE" 
      TCGA-D7-6528       TCGA-D7-6815       TCGA-D7-6817       TCGA-D7-6818 
"ACVR2A WILD-TYPE" "ACVR2A WILD-TYPE" "ACVR2A WILD-TYPE" "ACVR2A WILD-TYPE" 
      TCGA-D7-6820       TCGA-D7-6822       TCGA-EQ-5647       TCGA-F1-6177 
"ACVR2A WILD-TYPE" "ACVR2A WILD-TYPE" "ACVR2A WILD-TYPE" "ACVR2A WILD-TYPE" 
      TCGA-F1-6874 
  "ACVR2A MUTATED" 
      TCGA-B7-5816       TCGA-B7-5818       TCGA-BR-6452       TCGA-BR-6455 
"ACVR2A WILD-TYPE" "ACVR2A WILD-TYPE" "ACVR2A WILD-TYPE" "ACVR2A WILD-TYPE" 
      TCGA-BR-6457       TCGA-BR-6458       TCGA-BR-6564       TCGA-BR-6565 
"ACVR2A WILD-TYPE" "ACVR2A WILD-TYPE" "ACVR2A WILD-TYPE" "ACVR2A WILD-TYPE" 
      TCGA-BR-6566       TCGA-BR-6705       TCGA-BR-6706       TCGA-BR-6707 
  "ACVR2A MUTATED" "ACVR2A WILD-TYPE" "ACVR2A WILD-TYPE" "ACVR2A WILD-TYPE" 
      TCGA-BR-6709       TCGA-BR-6710       TCGA-BR-6801       TCGA-BR-6802 
"ACVR2A WILD-TYPE" "ACVR2A WILD-TYPE" "ACVR2A WILD-TYPE" "ACVR2A WILD-TYPE" 
      TCGA-BR-6803       TCGA-BR-6852       TCGA-CD-5798       TCGA-CD-5799 
"ACVR2A WILD-TYPE"   "ACVR2A MUTATED" "ACVR2A WILD-TYPE" "ACVR2A WILD-TYPE" 
      TCGA-CD-5800       TCGA-CD-5801       TCGA-CD-5802       TCGA-CD-5803 
"ACVR2A WILD-TYPE" "ACVR2A WILD-TYPE" "ACVR2A WILD-TYPE" "ACVR2A WILD-TYPE" 
      TCGA-CD-5813       TCGA-CG-4300       TCGA-CG-4301       TCGA-CG-4304 
"ACVR2A WILD-TYPE" "ACVR2A WILD-TYPE" "ACVR2A WILD-TYPE" "ACVR2A WILD-TYPE" 
      TCGA-CG-4305       TCGA-CG-4306       TCGA-CG-4436       TCGA-CG-4437 
"ACVR2A WILD-TYPE"   "ACVR2A MUTATED" "ACVR2A WILD-TYPE" "ACVR2A WILD-TYPE" 
      TCGA-CG-4438       TCGA-CG-4440       TCGA-CG-4441       TCGA-CG-4443 
"ACVR2A WILD-TYPE" "ACVR2A WILD-TYPE" "ACVR2A WILD-TYPE" "ACVR2A WILD-TYPE" 
      TCGA-CG-4444       TCGA-CG-4449       TCGA-CG-4455       TCGA-CG-4460 
"ACVR2A WILD-TYPE" "ACVR2A WILD-TYPE" "ACVR2A WILD-TYPE" "ACVR2A WILD-TYPE" 
      TCGA-CG-4462       TCGA-CG-4465       TCGA-CG-4466       TCGA-CG-4469 
"ACVR2A WILD-TYPE"   "ACVR2A MUTATED" "ACVR2A WILD-TYPE" "ACVR2A WILD-TYPE" 
      TCGA-CG-4472       TCGA-CG-4474       TCGA-CG-4477       TCGA-CG-5716 
"ACVR2A WILD-TYPE" "ACVR2A WILD-TYPE" "ACVR2A WILD-TYPE" "ACVR2A WILD-TYPE" 
      TCGA-CG-5717       TCGA-CG-5718       TCGA-CG-5719       TCGA-CG-5720 
"ACVR2A WILD-TYPE" "ACVR2A WILD-TYPE" "ACVR2A WILD-TYPE"   "ACVR2A MUTATED" 
      TCGA-CG-5721       TCGA-CG-5722       TCGA-CG-5723       TCGA-CG-5724 
"ACVR2A WILD-TYPE" "ACVR2A WILD-TYPE" "ACVR2A WILD-TYPE" "ACVR2A WILD-TYPE" 
      TCGA-CG-5725       TCGA-CG-5726       TCGA-CG-5727       TCGA-CG-5728 
"ACVR2A WILD-TYPE"   "ACVR2A MUTATED" "ACVR2A WILD-TYPE" "ACVR2A WILD-TYPE" 
      TCGA-CG-5730       TCGA-CG-5732       TCGA-CG-5733       TCGA-CG-5734 
"ACVR2A WILD-TYPE" "ACVR2A WILD-TYPE" "ACVR2A WILD-TYPE" "ACVR2A WILD-TYPE" 
      TCGA-D7-5577       TCGA-D7-5578       TCGA-D7-5579       TCGA-D7-6518 
"ACVR2A WILD-TYPE" "ACVR2A WILD-TYPE" "ACVR2A WILD-TYPE" "ACVR2A WILD-TYPE" 
      TCGA-D7-6519       TCGA-D7-6520       TCGA-D7-6521       TCGA-D7-6522 
"ACVR2A WILD-TYPE" "ACVR2A WILD-TYPE" "ACVR2A WILD-TYPE" "ACVR2A WILD-TYPE" 
      TCGA-D7-6524       TCGA-D7-6525       TCGA-D7-6526       TCGA-D7-6527 
"ACVR2A WILD-TYPE" "ACVR2A WILD-TYPE" "ACVR2A WILD-TYPE" "ACVR2A WILD-TYPE" 
      TCGA-D7-6528       TCGA-D7-6815       TCGA-D7-6817       TCGA-D7-6818 
"ACVR2A WILD-TYPE" "ACVR2A WILD-TYPE" "ACVR2A WILD-TYPE" "ACVR2A WILD-TYPE" 
      TCGA-D7-6820       TCGA-D7-6822       TCGA-EQ-5647       TCGA-F1-6177 
"ACVR2A WILD-TYPE" "ACVR2A WILD-TYPE" "ACVR2A WILD-TYPE" "ACVR2A WILD-TYPE" 
      TCGA-F1-6874 
  "ACVR2A MUTATED" 
      TCGA-B7-5816       TCGA-B7-5818       TCGA-BR-6452       TCGA-BR-6455 
"ACVR2A WILD-TYPE" "ACVR2A WILD-TYPE" "ACVR2A WILD-TYPE" "ACVR2A WILD-TYPE" 
      TCGA-BR-6457       TCGA-BR-6458       TCGA-BR-6564       TCGA-BR-6565 
"ACVR2A WILD-TYPE" "ACVR2A WILD-TYPE" "ACVR2A WILD-TYPE" "ACVR2A WILD-TYPE" 
      TCGA-BR-6566       TCGA-BR-6705       TCGA-BR-6706       TCGA-BR-6707 
  "ACVR2A MUTATED" "ACVR2A WILD-TYPE" "ACVR2A WILD-TYPE" "ACVR2A WILD-TYPE" 
      TCGA-BR-6709       TCGA-BR-6710       TCGA-BR-6801       TCGA-BR-6802 
"ACVR2A WILD-TYPE" "ACVR2A WILD-TYPE" "ACVR2A WILD-TYPE" "ACVR2A WILD-TYPE" 
      TCGA-BR-6803       TCGA-BR-6852       TCGA-CD-5798       TCGA-CD-5799 
"ACVR2A WILD-TYPE"   "ACVR2A MUTATED" "ACVR2A WILD-TYPE" "ACVR2A WILD-TYPE" 
      TCGA-CD-5800       TCGA-CD-5801       TCGA-CD-5802       TCGA-CD-5803 
"ACVR2A WILD-TYPE" "ACVR2A WILD-TYPE" "ACVR2A WILD-TYPE" "ACVR2A WILD-TYPE" 
      TCGA-CD-5813       TCGA-CG-4300       TCGA-CG-4301       TCGA-CG-4304 
"ACVR2A WILD-TYPE" "ACVR2A WILD-TYPE" "ACVR2A WILD-TYPE" "ACVR2A WILD-TYPE" 
      TCGA-CG-4305       TCGA-CG-4306       TCGA-CG-4436       TCGA-CG-4437 
"ACVR2A WILD-TYPE"   "ACVR2A MUTATED" "ACVR2A WILD-TYPE" "ACVR2A WILD-TYPE" 
      TCGA-CG-4438       TCGA-CG-4440       TCGA-CG-4441       TCGA-CG-4443 
"ACVR2A WILD-TYPE" "ACVR2A WILD-TYPE" "ACVR2A WILD-TYPE" "ACVR2A WILD-TYPE" 
      TCGA-CG-4444       TCGA-CG-4449       TCGA-CG-4455       TCGA-CG-4460 
"ACVR2A WILD-TYPE" "ACVR2A WILD-TYPE" "ACVR2A WILD-TYPE" "ACVR2A WILD-TYPE" 
      TCGA-CG-4462       TCGA-CG-4465       TCGA-CG-4466       TCGA-CG-4469 
"ACVR2A WILD-TYPE"   "ACVR2A MUTATED" "ACVR2A WILD-TYPE" "ACVR2A WILD-TYPE" 
      TCGA-CG-4472       TCGA-CG-4474       TCGA-CG-4477       TCGA-CG-5716 
"ACVR2A WILD-TYPE" "ACVR2A WILD-TYPE" "ACVR2A WILD-TYPE" "ACVR2A WILD-TYPE" 
      TCGA-CG-5717       TCGA-CG-5718       TCGA-CG-5719       TCGA-CG-5720 
"ACVR2A WILD-TYPE" "ACVR2A WILD-TYPE" "ACVR2A WILD-TYPE"   "ACVR2A MUTATED" 
      TCGA-CG-5721       TCGA-CG-5722       TCGA-CG-5723       TCGA-CG-5724 
"ACVR2A WILD-TYPE" "ACVR2A WILD-TYPE" "ACVR2A WILD-TYPE" "ACVR2A WILD-TYPE" 
      TCGA-CG-5725       TCGA-CG-5726       TCGA-CG-5727       TCGA-CG-5728 
"ACVR2A WILD-TYPE"   "ACVR2A MUTATED" "ACVR2A WILD-TYPE" "ACVR2A WILD-TYPE" 
      TCGA-CG-5730       TCGA-CG-5732       TCGA-CG-5733       TCGA-CG-5734 
"ACVR2A WILD-TYPE" "ACVR2A WILD-TYPE" "ACVR2A WILD-TYPE" "ACVR2A WILD-TYPE" 
      TCGA-D7-5577       TCGA-D7-5578       TCGA-D7-5579       TCGA-D7-6518 
"ACVR2A WILD-TYPE" "ACVR2A WILD-TYPE" "ACVR2A WILD-TYPE" "ACVR2A WILD-TYPE" 
      TCGA-D7-6519       TCGA-D7-6520       TCGA-D7-6521       TCGA-D7-6522 
"ACVR2A WILD-TYPE" "ACVR2A WILD-TYPE" "ACVR2A WILD-TYPE" "ACVR2A WILD-TYPE" 
      TCGA-D7-6524       TCGA-D7-6525       TCGA-D7-6526       TCGA-D7-6527 
"ACVR2A WILD-TYPE" "ACVR2A WILD-TYPE" "ACVR2A WILD-TYPE" "ACVR2A WILD-TYPE" 
      TCGA-D7-6528       TCGA-D7-6815       TCGA-D7-6817       TCGA-D7-6818 
"ACVR2A WILD-TYPE" "ACVR2A WILD-TYPE" "ACVR2A WILD-TYPE" "ACVR2A WILD-TYPE" 
      TCGA-D7-6820       TCGA-D7-6822       TCGA-EQ-5647       TCGA-F1-6177 
"ACVR2A WILD-TYPE" "ACVR2A WILD-TYPE" "ACVR2A WILD-TYPE" "ACVR2A WILD-TYPE" 
      TCGA-F1-6874 
  "ACVR2A MUTATED" 
[1] "hr=" "5.4"
D7V2, continuous
D7V3, binary
[1] "tbl2"
                  cls
clus               [,1] [,2]
  ACVR2A MUTATED      8    5
  ACVR2A WILD-TYPE   38   65
        clus
vv       ACVR2A MUTATED ACVR2A WILD-TYPE
  FEMALE              8               38
  MALE                5               65
D7V4, multiclass
D7V5, multiclass
    clus
vv   ACVR2A MUTATED ACVR2A WILD-TYPE
  T1              2                2
  T2              4               42
  T3              4               37
  T4              2               13
D7V6, multiclass
    clus
vv   ACVR2A MUTATED ACVR2A WILD-TYPE
  N0              5               30
  N1              3               36
  N2              2               17
  N3              1               11
D7V7, multiclass
    clus
vv   ACVR2A MUTATED ACVR2A WILD-TYPE
  M0             10               89
  M1              2               11
  MX              1                3
D7V8, multiclass
     clus
vv    ACVR2A MUTATED ACVR2A WILD-TYPE
  I                3               15
  II               3               29
  III              1               28
  IV               3               18

Clustering(8) Variable = RPL22 MUTATION ANALYSIS
D8V1, survival
                 sevent
clus2              0  1
  RPL22 MUTATED    1  2
  RPL22 WILD-TYPE 70 12
  RPL22 MUTATED RPL22 WILD-TYPE 
              3              82 
  RPL22 MUTATED RPL22 WILD-TYPE 
              2              12 
$`RPL22 MUTATED`
TCGA-CG-4460 TCGA-CG-5726 TCGA-F1-6177 
       21.99        28.96         6.54 

$`RPL22 WILD-TYPE`
TCGA-B7-5816 TCGA-B7-5818 TCGA-BR-6452 TCGA-BR-6455 TCGA-BR-6457 TCGA-BR-6458 
        5.62         0.10         0.95         1.41         1.35         1.35 
TCGA-BR-6564 TCGA-BR-6565 TCGA-BR-6566 TCGA-BR-6705 TCGA-BR-6706 TCGA-BR-6707 
        0.82         0.62         0.62         1.71         2.17         0.99 
TCGA-BR-6709 TCGA-BR-6710 TCGA-BR-6801 TCGA-BR-6802 TCGA-BR-6803 TCGA-BR-6852 
        1.22         0.66         1.12         0.76         0.66         0.26 
TCGA-CD-5798 TCGA-CD-5799 TCGA-CD-5800 TCGA-CD-5801 TCGA-CD-5802 TCGA-CD-5803 
        0.82         0.69         0.36         0.49         0.30         0.07 
TCGA-CD-5813 TCGA-CG-4300 TCGA-CG-4301 TCGA-CG-4304 TCGA-CG-4305 TCGA-CG-4306 
        0.39        20.02         3.02        27.02        15.95         1.02 
TCGA-CG-4436 TCGA-CG-4437 TCGA-CG-4438 TCGA-CG-4440 TCGA-CG-4441 TCGA-CG-4443 
       52.96         8.05        54.05         4.01        14.01        29.98 
TCGA-CG-4444 TCGA-CG-4449 TCGA-CG-4455 TCGA-CG-4462 TCGA-CG-4465 TCGA-CG-4466 
       47.05        19.07        12.03         1.02         8.98        18.94 
TCGA-CG-4469 TCGA-CG-4472 TCGA-CG-4474 TCGA-CG-4477 TCGA-CG-5716 TCGA-CG-5717 
        7.07        12.00         1.02         1.02         1.02         6.94 
TCGA-CG-5718 TCGA-CG-5719 TCGA-CG-5720 TCGA-CG-5721 TCGA-CG-5722 TCGA-CG-5723 
        1.02         1.02         0.99         5.98         0.95        70.06 
TCGA-CG-5724 TCGA-CG-5725 TCGA-CG-5727 TCGA-CG-5728 TCGA-CG-5730 TCGA-CG-5732 
       12.03        15.02        31.04        65.10         4.01        55.04 
TCGA-CG-5733 TCGA-CG-5734 TCGA-D7-5577 TCGA-D7-5578 TCGA-D7-5579 TCGA-D7-6518 
       21.07         7.99         8.65         3.58         4.54         9.80 
TCGA-D7-6519 TCGA-D7-6520 TCGA-D7-6521 TCGA-D7-6522 TCGA-D7-6524 TCGA-D7-6525 
       15.65         9.63         8.19         6.90         0.69         5.95 
TCGA-D7-6526 TCGA-D7-6527 TCGA-D7-6528 TCGA-D7-6815 TCGA-D7-6817 TCGA-D7-6818 
        6.61         4.14         1.68         3.65         4.70         4.04 
TCGA-D7-6820 TCGA-D7-6822 TCGA-EQ-5647 TCGA-F1-6874 
        2.93         4.27         0.62         2.01 

  RPL22 MUTATED RPL22 WILD-TYPE 
           6.54            0.07 
  RPL22 MUTATED RPL22 WILD-TYPE 
          28.96           70.06 
  RPL22 MUTATED RPL22 WILD-TYPE 
          21.99            3.83 
[1] "6.5 - 29.0 (22.0)" "0.1 - 70.1 (3.8)" 
     TCGA-B7-5816      TCGA-B7-5818      TCGA-BR-6452      TCGA-BR-6455 
"RPL22 WILD-TYPE" "RPL22 WILD-TYPE" "RPL22 WILD-TYPE" "RPL22 WILD-TYPE" 
     TCGA-BR-6457      TCGA-BR-6458      TCGA-BR-6564      TCGA-BR-6565 
"RPL22 WILD-TYPE" "RPL22 WILD-TYPE" "RPL22 WILD-TYPE" "RPL22 WILD-TYPE" 
     TCGA-BR-6566      TCGA-BR-6705      TCGA-BR-6706      TCGA-BR-6707 
"RPL22 WILD-TYPE" "RPL22 WILD-TYPE" "RPL22 WILD-TYPE" "RPL22 WILD-TYPE" 
     TCGA-BR-6709      TCGA-BR-6710      TCGA-BR-6801      TCGA-BR-6802 
"RPL22 WILD-TYPE" "RPL22 WILD-TYPE" "RPL22 WILD-TYPE" "RPL22 WILD-TYPE" 
     TCGA-BR-6803      TCGA-BR-6852      TCGA-CD-5798      TCGA-CD-5799 
"RPL22 WILD-TYPE" "RPL22 WILD-TYPE" "RPL22 WILD-TYPE" "RPL22 WILD-TYPE" 
     TCGA-CD-5800      TCGA-CD-5801      TCGA-CD-5802      TCGA-CD-5803 
"RPL22 WILD-TYPE" "RPL22 WILD-TYPE" "RPL22 WILD-TYPE" "RPL22 WILD-TYPE" 
     TCGA-CD-5813      TCGA-CG-4300      TCGA-CG-4301      TCGA-CG-4304 
"RPL22 WILD-TYPE" "RPL22 WILD-TYPE" "RPL22 WILD-TYPE" "RPL22 WILD-TYPE" 
     TCGA-CG-4305      TCGA-CG-4306      TCGA-CG-4436      TCGA-CG-4437 
"RPL22 WILD-TYPE" "RPL22 WILD-TYPE" "RPL22 WILD-TYPE" "RPL22 WILD-TYPE" 
     TCGA-CG-4438      TCGA-CG-4440      TCGA-CG-4441      TCGA-CG-4443 
"RPL22 WILD-TYPE" "RPL22 WILD-TYPE" "RPL22 WILD-TYPE" "RPL22 WILD-TYPE" 
     TCGA-CG-4444      TCGA-CG-4449      TCGA-CG-4455      TCGA-CG-4460 
"RPL22 WILD-TYPE" "RPL22 WILD-TYPE" "RPL22 WILD-TYPE"   "RPL22 MUTATED" 
     TCGA-CG-4462      TCGA-CG-4465      TCGA-CG-4466      TCGA-CG-4469 
"RPL22 WILD-TYPE" "RPL22 WILD-TYPE" "RPL22 WILD-TYPE" "RPL22 WILD-TYPE" 
     TCGA-CG-4472      TCGA-CG-4474      TCGA-CG-4477      TCGA-CG-5716 
"RPL22 WILD-TYPE" "RPL22 WILD-TYPE" "RPL22 WILD-TYPE" "RPL22 WILD-TYPE" 
     TCGA-CG-5717      TCGA-CG-5718      TCGA-CG-5719      TCGA-CG-5720 
"RPL22 WILD-TYPE" "RPL22 WILD-TYPE" "RPL22 WILD-TYPE" "RPL22 WILD-TYPE" 
     TCGA-CG-5721      TCGA-CG-5722      TCGA-CG-5723      TCGA-CG-5724 
"RPL22 WILD-TYPE" "RPL22 WILD-TYPE" "RPL22 WILD-TYPE" "RPL22 WILD-TYPE" 
     TCGA-CG-5725      TCGA-CG-5726      TCGA-CG-5727      TCGA-CG-5728 
"RPL22 WILD-TYPE"   "RPL22 MUTATED" "RPL22 WILD-TYPE" "RPL22 WILD-TYPE" 
     TCGA-CG-5730      TCGA-CG-5732      TCGA-CG-5733      TCGA-CG-5734 
"RPL22 WILD-TYPE" "RPL22 WILD-TYPE" "RPL22 WILD-TYPE" "RPL22 WILD-TYPE" 
     TCGA-D7-5577      TCGA-D7-5578      TCGA-D7-5579      TCGA-D7-6518 
"RPL22 WILD-TYPE" "RPL22 WILD-TYPE" "RPL22 WILD-TYPE" "RPL22 WILD-TYPE" 
     TCGA-D7-6519      TCGA-D7-6520      TCGA-D7-6521      TCGA-D7-6522 
"RPL22 WILD-TYPE" "RPL22 WILD-TYPE" "RPL22 WILD-TYPE" "RPL22 WILD-TYPE" 
     TCGA-D7-6524      TCGA-D7-6525      TCGA-D7-6526      TCGA-D7-6527 
"RPL22 WILD-TYPE" "RPL22 WILD-TYPE" "RPL22 WILD-TYPE" "RPL22 WILD-TYPE" 
     TCGA-D7-6528      TCGA-D7-6815      TCGA-D7-6817      TCGA-D7-6818 
"RPL22 WILD-TYPE" "RPL22 WILD-TYPE" "RPL22 WILD-TYPE" "RPL22 WILD-TYPE" 
     TCGA-D7-6820      TCGA-D7-6822      TCGA-EQ-5647      TCGA-F1-6177 
"RPL22 WILD-TYPE" "RPL22 WILD-TYPE" "RPL22 WILD-TYPE"   "RPL22 MUTATED" 
     TCGA-F1-6874 
"RPL22 WILD-TYPE" 
     TCGA-B7-5816      TCGA-B7-5818      TCGA-BR-6452      TCGA-BR-6455 
"RPL22 WILD-TYPE" "RPL22 WILD-TYPE" "RPL22 WILD-TYPE" "RPL22 WILD-TYPE" 
     TCGA-BR-6457      TCGA-BR-6458      TCGA-BR-6564      TCGA-BR-6565 
"RPL22 WILD-TYPE" "RPL22 WILD-TYPE" "RPL22 WILD-TYPE" "RPL22 WILD-TYPE" 
     TCGA-BR-6566      TCGA-BR-6705      TCGA-BR-6706      TCGA-BR-6707 
"RPL22 WILD-TYPE" "RPL22 WILD-TYPE" "RPL22 WILD-TYPE" "RPL22 WILD-TYPE" 
     TCGA-BR-6709      TCGA-BR-6710      TCGA-BR-6801      TCGA-BR-6802 
"RPL22 WILD-TYPE" "RPL22 WILD-TYPE" "RPL22 WILD-TYPE" "RPL22 WILD-TYPE" 
     TCGA-BR-6803      TCGA-BR-6852      TCGA-CD-5798      TCGA-CD-5799 
"RPL22 WILD-TYPE" "RPL22 WILD-TYPE" "RPL22 WILD-TYPE" "RPL22 WILD-TYPE" 
     TCGA-CD-5800      TCGA-CD-5801      TCGA-CD-5802      TCGA-CD-5803 
"RPL22 WILD-TYPE" "RPL22 WILD-TYPE" "RPL22 WILD-TYPE" "RPL22 WILD-TYPE" 
     TCGA-CD-5813      TCGA-CG-4300      TCGA-CG-4301      TCGA-CG-4304 
"RPL22 WILD-TYPE" "RPL22 WILD-TYPE" "RPL22 WILD-TYPE" "RPL22 WILD-TYPE" 
     TCGA-CG-4305      TCGA-CG-4306      TCGA-CG-4436      TCGA-CG-4437 
"RPL22 WILD-TYPE" "RPL22 WILD-TYPE" "RPL22 WILD-TYPE" "RPL22 WILD-TYPE" 
     TCGA-CG-4438      TCGA-CG-4440      TCGA-CG-4441      TCGA-CG-4443 
"RPL22 WILD-TYPE" "RPL22 WILD-TYPE" "RPL22 WILD-TYPE" "RPL22 WILD-TYPE" 
     TCGA-CG-4444      TCGA-CG-4449      TCGA-CG-4455      TCGA-CG-4460 
"RPL22 WILD-TYPE" "RPL22 WILD-TYPE" "RPL22 WILD-TYPE"   "RPL22 MUTATED" 
     TCGA-CG-4462      TCGA-CG-4465      TCGA-CG-4466      TCGA-CG-4469 
"RPL22 WILD-TYPE" "RPL22 WILD-TYPE" "RPL22 WILD-TYPE" "RPL22 WILD-TYPE" 
     TCGA-CG-4472      TCGA-CG-4474      TCGA-CG-4477      TCGA-CG-5716 
"RPL22 WILD-TYPE" "RPL22 WILD-TYPE" "RPL22 WILD-TYPE" "RPL22 WILD-TYPE" 
     TCGA-CG-5717      TCGA-CG-5718      TCGA-CG-5719      TCGA-CG-5720 
"RPL22 WILD-TYPE" "RPL22 WILD-TYPE" "RPL22 WILD-TYPE" "RPL22 WILD-TYPE" 
     TCGA-CG-5721      TCGA-CG-5722      TCGA-CG-5723      TCGA-CG-5724 
"RPL22 WILD-TYPE" "RPL22 WILD-TYPE" "RPL22 WILD-TYPE" "RPL22 WILD-TYPE" 
     TCGA-CG-5725      TCGA-CG-5726      TCGA-CG-5727      TCGA-CG-5728 
"RPL22 WILD-TYPE"   "RPL22 MUTATED" "RPL22 WILD-TYPE" "RPL22 WILD-TYPE" 
     TCGA-CG-5730      TCGA-CG-5732      TCGA-CG-5733      TCGA-CG-5734 
"RPL22 WILD-TYPE" "RPL22 WILD-TYPE" "RPL22 WILD-TYPE" "RPL22 WILD-TYPE" 
     TCGA-D7-5577      TCGA-D7-5578      TCGA-D7-5579      TCGA-D7-6518 
"RPL22 WILD-TYPE" "RPL22 WILD-TYPE" "RPL22 WILD-TYPE" "RPL22 WILD-TYPE" 
     TCGA-D7-6519      TCGA-D7-6520      TCGA-D7-6521      TCGA-D7-6522 
"RPL22 WILD-TYPE" "RPL22 WILD-TYPE" "RPL22 WILD-TYPE" "RPL22 WILD-TYPE" 
     TCGA-D7-6524      TCGA-D7-6525      TCGA-D7-6526      TCGA-D7-6527 
"RPL22 WILD-TYPE" "RPL22 WILD-TYPE" "RPL22 WILD-TYPE" "RPL22 WILD-TYPE" 
     TCGA-D7-6528      TCGA-D7-6815      TCGA-D7-6817      TCGA-D7-6818 
"RPL22 WILD-TYPE" "RPL22 WILD-TYPE" "RPL22 WILD-TYPE" "RPL22 WILD-TYPE" 
     TCGA-D7-6820      TCGA-D7-6822      TCGA-EQ-5647      TCGA-F1-6177 
"RPL22 WILD-TYPE" "RPL22 WILD-TYPE" "RPL22 WILD-TYPE"   "RPL22 MUTATED" 
     TCGA-F1-6874 
"RPL22 WILD-TYPE" 
     TCGA-B7-5816      TCGA-B7-5818      TCGA-BR-6452      TCGA-BR-6455 
"RPL22 WILD-TYPE" "RPL22 WILD-TYPE" "RPL22 WILD-TYPE" "RPL22 WILD-TYPE" 
     TCGA-BR-6457      TCGA-BR-6458      TCGA-BR-6564      TCGA-BR-6565 
"RPL22 WILD-TYPE" "RPL22 WILD-TYPE" "RPL22 WILD-TYPE" "RPL22 WILD-TYPE" 
     TCGA-BR-6566      TCGA-BR-6705      TCGA-BR-6706      TCGA-BR-6707 
"RPL22 WILD-TYPE" "RPL22 WILD-TYPE" "RPL22 WILD-TYPE" "RPL22 WILD-TYPE" 
     TCGA-BR-6709      TCGA-BR-6710      TCGA-BR-6801      TCGA-BR-6802 
"RPL22 WILD-TYPE" "RPL22 WILD-TYPE" "RPL22 WILD-TYPE" "RPL22 WILD-TYPE" 
     TCGA-BR-6803      TCGA-BR-6852      TCGA-CD-5798      TCGA-CD-5799 
"RPL22 WILD-TYPE" "RPL22 WILD-TYPE" "RPL22 WILD-TYPE" "RPL22 WILD-TYPE" 
     TCGA-CD-5800      TCGA-CD-5801      TCGA-CD-5802      TCGA-CD-5803 
"RPL22 WILD-TYPE" "RPL22 WILD-TYPE" "RPL22 WILD-TYPE" "RPL22 WILD-TYPE" 
     TCGA-CD-5813      TCGA-CG-4300      TCGA-CG-4301      TCGA-CG-4304 
"RPL22 WILD-TYPE" "RPL22 WILD-TYPE" "RPL22 WILD-TYPE" "RPL22 WILD-TYPE" 
     TCGA-CG-4305      TCGA-CG-4306      TCGA-CG-4436      TCGA-CG-4437 
"RPL22 WILD-TYPE" "RPL22 WILD-TYPE" "RPL22 WILD-TYPE" "RPL22 WILD-TYPE" 
     TCGA-CG-4438      TCGA-CG-4440      TCGA-CG-4441      TCGA-CG-4443 
"RPL22 WILD-TYPE" "RPL22 WILD-TYPE" "RPL22 WILD-TYPE" "RPL22 WILD-TYPE" 
     TCGA-CG-4444      TCGA-CG-4449      TCGA-CG-4455      TCGA-CG-4460 
"RPL22 WILD-TYPE" "RPL22 WILD-TYPE" "RPL22 WILD-TYPE"   "RPL22 MUTATED" 
     TCGA-CG-4462      TCGA-CG-4465      TCGA-CG-4466      TCGA-CG-4469 
"RPL22 WILD-TYPE" "RPL22 WILD-TYPE" "RPL22 WILD-TYPE" "RPL22 WILD-TYPE" 
     TCGA-CG-4472      TCGA-CG-4474      TCGA-CG-4477      TCGA-CG-5716 
"RPL22 WILD-TYPE" "RPL22 WILD-TYPE" "RPL22 WILD-TYPE" "RPL22 WILD-TYPE" 
     TCGA-CG-5717      TCGA-CG-5718      TCGA-CG-5719      TCGA-CG-5720 
"RPL22 WILD-TYPE" "RPL22 WILD-TYPE" "RPL22 WILD-TYPE" "RPL22 WILD-TYPE" 
     TCGA-CG-5721      TCGA-CG-5722      TCGA-CG-5723      TCGA-CG-5724 
"RPL22 WILD-TYPE" "RPL22 WILD-TYPE" "RPL22 WILD-TYPE" "RPL22 WILD-TYPE" 
     TCGA-CG-5725      TCGA-CG-5726      TCGA-CG-5727      TCGA-CG-5728 
"RPL22 WILD-TYPE"   "RPL22 MUTATED" "RPL22 WILD-TYPE" "RPL22 WILD-TYPE" 
     TCGA-CG-5730      TCGA-CG-5732      TCGA-CG-5733      TCGA-CG-5734 
"RPL22 WILD-TYPE" "RPL22 WILD-TYPE" "RPL22 WILD-TYPE" "RPL22 WILD-TYPE" 
     TCGA-D7-5577      TCGA-D7-5578      TCGA-D7-5579      TCGA-D7-6518 
"RPL22 WILD-TYPE" "RPL22 WILD-TYPE" "RPL22 WILD-TYPE" "RPL22 WILD-TYPE" 
     TCGA-D7-6519      TCGA-D7-6520      TCGA-D7-6521      TCGA-D7-6522 
"RPL22 WILD-TYPE" "RPL22 WILD-TYPE" "RPL22 WILD-TYPE" "RPL22 WILD-TYPE" 
     TCGA-D7-6524      TCGA-D7-6525      TCGA-D7-6526      TCGA-D7-6527 
"RPL22 WILD-TYPE" "RPL22 WILD-TYPE" "RPL22 WILD-TYPE" "RPL22 WILD-TYPE" 
     TCGA-D7-6528      TCGA-D7-6815      TCGA-D7-6817      TCGA-D7-6818 
"RPL22 WILD-TYPE" "RPL22 WILD-TYPE" "RPL22 WILD-TYPE" "RPL22 WILD-TYPE" 
     TCGA-D7-6820      TCGA-D7-6822      TCGA-EQ-5647      TCGA-F1-6177 
"RPL22 WILD-TYPE" "RPL22 WILD-TYPE" "RPL22 WILD-TYPE"   "RPL22 MUTATED" 
     TCGA-F1-6874 
"RPL22 WILD-TYPE" 
[1] "hr=" "1.7"
D8V2, continuous
D8V3, binary
[1] "tbl2"
                 cls
clus              [,1] [,2]
  RPL22 MUTATED      5    4
  RPL22 WILD-TYPE   41   66
        clus
vv       RPL22 MUTATED RPL22 WILD-TYPE
  FEMALE             5              41
  MALE               4              66
D8V4, multiclass
D8V5, multiclass
    clus
vv   RPL22 MUTATED RPL22 WILD-TYPE
  T1             2               2
  T2             2              44
  T3             2              39
  T4             1              14
D8V6, multiclass
    clus
vv   RPL22 MUTATED RPL22 WILD-TYPE
  N0             2              33
  N1             5              34
  N2             0              19
  N3             0              12
D8V7, multiclass
    clus
vv   RPL22 MUTATED RPL22 WILD-TYPE
  M0             5              94
  M1             1              12
  MX             3               1
D8V8, multiclass
     clus
vv    RPL22 MUTATED RPL22 WILD-TYPE
  I               3              15
  II              0              32
  III             2              27
  IV              1              20

Clustering(9) Variable = OR8H3 MUTATION ANALYSIS
D9V1, survival
                 sevent
clus2              0  1
  OR8H3 MUTATED    8  2
  OR8H3 WILD-TYPE 63 12
  OR8H3 MUTATED OR8H3 WILD-TYPE 
             10              75 
  OR8H3 MUTATED OR8H3 WILD-TYPE 
              2              12 
$`OR8H3 MUTATED`
TCGA-B7-5818 TCGA-BR-6452 TCGA-CG-4436 TCGA-CG-4444 TCGA-CG-4469 TCGA-CG-5721 
        0.10         0.95        52.96        47.05         7.07         5.98 
TCGA-CG-5728 TCGA-CG-5733 TCGA-D7-5578 TCGA-D7-6525 
       65.10        21.07         3.58         5.95 

$`OR8H3 WILD-TYPE`
TCGA-B7-5816 TCGA-BR-6455 TCGA-BR-6457 TCGA-BR-6458 TCGA-BR-6564 TCGA-BR-6565 
        5.62         1.41         1.35         1.35         0.82         0.62 
TCGA-BR-6566 TCGA-BR-6705 TCGA-BR-6706 TCGA-BR-6707 TCGA-BR-6709 TCGA-BR-6710 
        0.62         1.71         2.17         0.99         1.22         0.66 
TCGA-BR-6801 TCGA-BR-6802 TCGA-BR-6803 TCGA-BR-6852 TCGA-CD-5798 TCGA-CD-5799 
        1.12         0.76         0.66         0.26         0.82         0.69 
TCGA-CD-5800 TCGA-CD-5801 TCGA-CD-5802 TCGA-CD-5803 TCGA-CD-5813 TCGA-CG-4300 
        0.36         0.49         0.30         0.07         0.39        20.02 
TCGA-CG-4301 TCGA-CG-4304 TCGA-CG-4305 TCGA-CG-4306 TCGA-CG-4437 TCGA-CG-4438 
        3.02        27.02        15.95         1.02         8.05        54.05 
TCGA-CG-4440 TCGA-CG-4441 TCGA-CG-4443 TCGA-CG-4449 TCGA-CG-4455 TCGA-CG-4460 
        4.01        14.01        29.98        19.07        12.03        21.99 
TCGA-CG-4462 TCGA-CG-4465 TCGA-CG-4466 TCGA-CG-4472 TCGA-CG-4474 TCGA-CG-4477 
        1.02         8.98        18.94        12.00         1.02         1.02 
TCGA-CG-5716 TCGA-CG-5717 TCGA-CG-5718 TCGA-CG-5719 TCGA-CG-5720 TCGA-CG-5722 
        1.02         6.94         1.02         1.02         0.99         0.95 
TCGA-CG-5723 TCGA-CG-5724 TCGA-CG-5725 TCGA-CG-5726 TCGA-CG-5727 TCGA-CG-5730 
       70.06        12.03        15.02        28.96        31.04         4.01 
TCGA-CG-5732 TCGA-CG-5734 TCGA-D7-5577 TCGA-D7-5579 TCGA-D7-6518 TCGA-D7-6519 
       55.04         7.99         8.65         4.54         9.80        15.65 
TCGA-D7-6520 TCGA-D7-6521 TCGA-D7-6522 TCGA-D7-6524 TCGA-D7-6526 TCGA-D7-6527 
        9.63         8.19         6.90         0.69         6.61         4.14 
TCGA-D7-6528 TCGA-D7-6815 TCGA-D7-6817 TCGA-D7-6818 TCGA-D7-6820 TCGA-D7-6822 
        1.68         3.65         4.70         4.04         2.93         4.27 
TCGA-EQ-5647 TCGA-F1-6177 TCGA-F1-6874 
        0.62         6.54         2.01 

  OR8H3 MUTATED OR8H3 WILD-TYPE 
           0.10            0.07 
  OR8H3 MUTATED OR8H3 WILD-TYPE 
          65.10           70.06 
  OR8H3 MUTATED OR8H3 WILD-TYPE 
          6.525           3.650 
[1] "0.1 - 65.1 (6.5)" "0.1 - 70.1 (3.6)"
     TCGA-B7-5816      TCGA-B7-5818      TCGA-BR-6452      TCGA-BR-6455 
"OR8H3 WILD-TYPE"   "OR8H3 MUTATED"   "OR8H3 MUTATED" "OR8H3 WILD-TYPE" 
     TCGA-BR-6457      TCGA-BR-6458      TCGA-BR-6564      TCGA-BR-6565 
"OR8H3 WILD-TYPE" "OR8H3 WILD-TYPE" "OR8H3 WILD-TYPE" "OR8H3 WILD-TYPE" 
     TCGA-BR-6566      TCGA-BR-6705      TCGA-BR-6706      TCGA-BR-6707 
"OR8H3 WILD-TYPE" "OR8H3 WILD-TYPE" "OR8H3 WILD-TYPE" "OR8H3 WILD-TYPE" 
     TCGA-BR-6709      TCGA-BR-6710      TCGA-BR-6801      TCGA-BR-6802 
"OR8H3 WILD-TYPE" "OR8H3 WILD-TYPE" "OR8H3 WILD-TYPE" "OR8H3 WILD-TYPE" 
     TCGA-BR-6803      TCGA-BR-6852      TCGA-CD-5798      TCGA-CD-5799 
"OR8H3 WILD-TYPE" "OR8H3 WILD-TYPE" "OR8H3 WILD-TYPE" "OR8H3 WILD-TYPE" 
     TCGA-CD-5800      TCGA-CD-5801      TCGA-CD-5802      TCGA-CD-5803 
"OR8H3 WILD-TYPE" "OR8H3 WILD-TYPE" "OR8H3 WILD-TYPE" "OR8H3 WILD-TYPE" 
     TCGA-CD-5813      TCGA-CG-4300      TCGA-CG-4301      TCGA-CG-4304 
"OR8H3 WILD-TYPE" "OR8H3 WILD-TYPE" "OR8H3 WILD-TYPE" "OR8H3 WILD-TYPE" 
     TCGA-CG-4305      TCGA-CG-4306      TCGA-CG-4436      TCGA-CG-4437 
"OR8H3 WILD-TYPE" "OR8H3 WILD-TYPE"   "OR8H3 MUTATED" "OR8H3 WILD-TYPE" 
     TCGA-CG-4438      TCGA-CG-4440      TCGA-CG-4441      TCGA-CG-4443 
"OR8H3 WILD-TYPE" "OR8H3 WILD-TYPE" "OR8H3 WILD-TYPE" "OR8H3 WILD-TYPE" 
     TCGA-CG-4444      TCGA-CG-4449      TCGA-CG-4455      TCGA-CG-4460 
  "OR8H3 MUTATED" "OR8H3 WILD-TYPE" "OR8H3 WILD-TYPE" "OR8H3 WILD-TYPE" 
     TCGA-CG-4462      TCGA-CG-4465      TCGA-CG-4466      TCGA-CG-4469 
"OR8H3 WILD-TYPE" "OR8H3 WILD-TYPE" "OR8H3 WILD-TYPE"   "OR8H3 MUTATED" 
     TCGA-CG-4472      TCGA-CG-4474      TCGA-CG-4477      TCGA-CG-5716 
"OR8H3 WILD-TYPE" "OR8H3 WILD-TYPE" "OR8H3 WILD-TYPE" "OR8H3 WILD-TYPE" 
     TCGA-CG-5717      TCGA-CG-5718      TCGA-CG-5719      TCGA-CG-5720 
"OR8H3 WILD-TYPE" "OR8H3 WILD-TYPE" "OR8H3 WILD-TYPE" "OR8H3 WILD-TYPE" 
     TCGA-CG-5721      TCGA-CG-5722      TCGA-CG-5723      TCGA-CG-5724 
  "OR8H3 MUTATED" "OR8H3 WILD-TYPE" "OR8H3 WILD-TYPE" "OR8H3 WILD-TYPE" 
     TCGA-CG-5725      TCGA-CG-5726      TCGA-CG-5727      TCGA-CG-5728 
"OR8H3 WILD-TYPE" "OR8H3 WILD-TYPE" "OR8H3 WILD-TYPE"   "OR8H3 MUTATED" 
     TCGA-CG-5730      TCGA-CG-5732      TCGA-CG-5733      TCGA-CG-5734 
"OR8H3 WILD-TYPE" "OR8H3 WILD-TYPE"   "OR8H3 MUTATED" "OR8H3 WILD-TYPE" 
     TCGA-D7-5577      TCGA-D7-5578      TCGA-D7-5579      TCGA-D7-6518 
"OR8H3 WILD-TYPE"   "OR8H3 MUTATED" "OR8H3 WILD-TYPE" "OR8H3 WILD-TYPE" 
     TCGA-D7-6519      TCGA-D7-6520      TCGA-D7-6521      TCGA-D7-6522 
"OR8H3 WILD-TYPE" "OR8H3 WILD-TYPE" "OR8H3 WILD-TYPE" "OR8H3 WILD-TYPE" 
     TCGA-D7-6524      TCGA-D7-6525      TCGA-D7-6526      TCGA-D7-6527 
"OR8H3 WILD-TYPE"   "OR8H3 MUTATED" "OR8H3 WILD-TYPE" "OR8H3 WILD-TYPE" 
     TCGA-D7-6528      TCGA-D7-6815      TCGA-D7-6817      TCGA-D7-6818 
"OR8H3 WILD-TYPE" "OR8H3 WILD-TYPE" "OR8H3 WILD-TYPE" "OR8H3 WILD-TYPE" 
     TCGA-D7-6820      TCGA-D7-6822      TCGA-EQ-5647      TCGA-F1-6177 
"OR8H3 WILD-TYPE" "OR8H3 WILD-TYPE" "OR8H3 WILD-TYPE" "OR8H3 WILD-TYPE" 
     TCGA-F1-6874 
"OR8H3 WILD-TYPE" 
     TCGA-B7-5816      TCGA-B7-5818      TCGA-BR-6452      TCGA-BR-6455 
"OR8H3 WILD-TYPE"   "OR8H3 MUTATED"   "OR8H3 MUTATED" "OR8H3 WILD-TYPE" 
     TCGA-BR-6457      TCGA-BR-6458      TCGA-BR-6564      TCGA-BR-6565 
"OR8H3 WILD-TYPE" "OR8H3 WILD-TYPE" "OR8H3 WILD-TYPE" "OR8H3 WILD-TYPE" 
     TCGA-BR-6566      TCGA-BR-6705      TCGA-BR-6706      TCGA-BR-6707 
"OR8H3 WILD-TYPE" "OR8H3 WILD-TYPE" "OR8H3 WILD-TYPE" "OR8H3 WILD-TYPE" 
     TCGA-BR-6709      TCGA-BR-6710      TCGA-BR-6801      TCGA-BR-6802 
"OR8H3 WILD-TYPE" "OR8H3 WILD-TYPE" "OR8H3 WILD-TYPE" "OR8H3 WILD-TYPE" 
     TCGA-BR-6803      TCGA-BR-6852      TCGA-CD-5798      TCGA-CD-5799 
"OR8H3 WILD-TYPE" "OR8H3 WILD-TYPE" "OR8H3 WILD-TYPE" "OR8H3 WILD-TYPE" 
     TCGA-CD-5800      TCGA-CD-5801      TCGA-CD-5802      TCGA-CD-5803 
"OR8H3 WILD-TYPE" "OR8H3 WILD-TYPE" "OR8H3 WILD-TYPE" "OR8H3 WILD-TYPE" 
     TCGA-CD-5813      TCGA-CG-4300      TCGA-CG-4301      TCGA-CG-4304 
"OR8H3 WILD-TYPE" "OR8H3 WILD-TYPE" "OR8H3 WILD-TYPE" "OR8H3 WILD-TYPE" 
     TCGA-CG-4305      TCGA-CG-4306      TCGA-CG-4436      TCGA-CG-4437 
"OR8H3 WILD-TYPE" "OR8H3 WILD-TYPE"   "OR8H3 MUTATED" "OR8H3 WILD-TYPE" 
     TCGA-CG-4438      TCGA-CG-4440      TCGA-CG-4441      TCGA-CG-4443 
"OR8H3 WILD-TYPE" "OR8H3 WILD-TYPE" "OR8H3 WILD-TYPE" "OR8H3 WILD-TYPE" 
     TCGA-CG-4444      TCGA-CG-4449      TCGA-CG-4455      TCGA-CG-4460 
  "OR8H3 MUTATED" "OR8H3 WILD-TYPE" "OR8H3 WILD-TYPE" "OR8H3 WILD-TYPE" 
     TCGA-CG-4462      TCGA-CG-4465      TCGA-CG-4466      TCGA-CG-4469 
"OR8H3 WILD-TYPE" "OR8H3 WILD-TYPE" "OR8H3 WILD-TYPE"   "OR8H3 MUTATED" 
     TCGA-CG-4472      TCGA-CG-4474      TCGA-CG-4477      TCGA-CG-5716 
"OR8H3 WILD-TYPE" "OR8H3 WILD-TYPE" "OR8H3 WILD-TYPE" "OR8H3 WILD-TYPE" 
     TCGA-CG-5717      TCGA-CG-5718      TCGA-CG-5719      TCGA-CG-5720 
"OR8H3 WILD-TYPE" "OR8H3 WILD-TYPE" "OR8H3 WILD-TYPE" "OR8H3 WILD-TYPE" 
     TCGA-CG-5721      TCGA-CG-5722      TCGA-CG-5723      TCGA-CG-5724 
  "OR8H3 MUTATED" "OR8H3 WILD-TYPE" "OR8H3 WILD-TYPE" "OR8H3 WILD-TYPE" 
     TCGA-CG-5725      TCGA-CG-5726      TCGA-CG-5727      TCGA-CG-5728 
"OR8H3 WILD-TYPE" "OR8H3 WILD-TYPE" "OR8H3 WILD-TYPE"   "OR8H3 MUTATED" 
     TCGA-CG-5730      TCGA-CG-5732      TCGA-CG-5733      TCGA-CG-5734 
"OR8H3 WILD-TYPE" "OR8H3 WILD-TYPE"   "OR8H3 MUTATED" "OR8H3 WILD-TYPE" 
     TCGA-D7-5577      TCGA-D7-5578      TCGA-D7-5579      TCGA-D7-6518 
"OR8H3 WILD-TYPE"   "OR8H3 MUTATED" "OR8H3 WILD-TYPE" "OR8H3 WILD-TYPE" 
     TCGA-D7-6519      TCGA-D7-6520      TCGA-D7-6521      TCGA-D7-6522 
"OR8H3 WILD-TYPE" "OR8H3 WILD-TYPE" "OR8H3 WILD-TYPE" "OR8H3 WILD-TYPE" 
     TCGA-D7-6524      TCGA-D7-6525      TCGA-D7-6526      TCGA-D7-6527 
"OR8H3 WILD-TYPE"   "OR8H3 MUTATED" "OR8H3 WILD-TYPE" "OR8H3 WILD-TYPE" 
     TCGA-D7-6528      TCGA-D7-6815      TCGA-D7-6817      TCGA-D7-6818 
"OR8H3 WILD-TYPE" "OR8H3 WILD-TYPE" "OR8H3 WILD-TYPE" "OR8H3 WILD-TYPE" 
     TCGA-D7-6820      TCGA-D7-6822      TCGA-EQ-5647      TCGA-F1-6177 
"OR8H3 WILD-TYPE" "OR8H3 WILD-TYPE" "OR8H3 WILD-TYPE" "OR8H3 WILD-TYPE" 
     TCGA-F1-6874 
"OR8H3 WILD-TYPE" 
     TCGA-B7-5816      TCGA-B7-5818      TCGA-BR-6452      TCGA-BR-6455 
"OR8H3 WILD-TYPE"   "OR8H3 MUTATED"   "OR8H3 MUTATED" "OR8H3 WILD-TYPE" 
     TCGA-BR-6457      TCGA-BR-6458      TCGA-BR-6564      TCGA-BR-6565 
"OR8H3 WILD-TYPE" "OR8H3 WILD-TYPE" "OR8H3 WILD-TYPE" "OR8H3 WILD-TYPE" 
     TCGA-BR-6566      TCGA-BR-6705      TCGA-BR-6706      TCGA-BR-6707 
"OR8H3 WILD-TYPE" "OR8H3 WILD-TYPE" "OR8H3 WILD-TYPE" "OR8H3 WILD-TYPE" 
     TCGA-BR-6709      TCGA-BR-6710      TCGA-BR-6801      TCGA-BR-6802 
"OR8H3 WILD-TYPE" "OR8H3 WILD-TYPE" "OR8H3 WILD-TYPE" "OR8H3 WILD-TYPE" 
     TCGA-BR-6803      TCGA-BR-6852      TCGA-CD-5798      TCGA-CD-5799 
"OR8H3 WILD-TYPE" "OR8H3 WILD-TYPE" "OR8H3 WILD-TYPE" "OR8H3 WILD-TYPE" 
     TCGA-CD-5800      TCGA-CD-5801      TCGA-CD-5802      TCGA-CD-5803 
"OR8H3 WILD-TYPE" "OR8H3 WILD-TYPE" "OR8H3 WILD-TYPE" "OR8H3 WILD-TYPE" 
     TCGA-CD-5813      TCGA-CG-4300      TCGA-CG-4301      TCGA-CG-4304 
"OR8H3 WILD-TYPE" "OR8H3 WILD-TYPE" "OR8H3 WILD-TYPE" "OR8H3 WILD-TYPE" 
     TCGA-CG-4305      TCGA-CG-4306      TCGA-CG-4436      TCGA-CG-4437 
"OR8H3 WILD-TYPE" "OR8H3 WILD-TYPE"   "OR8H3 MUTATED" "OR8H3 WILD-TYPE" 
     TCGA-CG-4438      TCGA-CG-4440      TCGA-CG-4441      TCGA-CG-4443 
"OR8H3 WILD-TYPE" "OR8H3 WILD-TYPE" "OR8H3 WILD-TYPE" "OR8H3 WILD-TYPE" 
     TCGA-CG-4444      TCGA-CG-4449      TCGA-CG-4455      TCGA-CG-4460 
  "OR8H3 MUTATED" "OR8H3 WILD-TYPE" "OR8H3 WILD-TYPE" "OR8H3 WILD-TYPE" 
     TCGA-CG-4462      TCGA-CG-4465      TCGA-CG-4466      TCGA-CG-4469 
"OR8H3 WILD-TYPE" "OR8H3 WILD-TYPE" "OR8H3 WILD-TYPE"   "OR8H3 MUTATED" 
     TCGA-CG-4472      TCGA-CG-4474      TCGA-CG-4477      TCGA-CG-5716 
"OR8H3 WILD-TYPE" "OR8H3 WILD-TYPE" "OR8H3 WILD-TYPE" "OR8H3 WILD-TYPE" 
     TCGA-CG-5717      TCGA-CG-5718      TCGA-CG-5719      TCGA-CG-5720 
"OR8H3 WILD-TYPE" "OR8H3 WILD-TYPE" "OR8H3 WILD-TYPE" "OR8H3 WILD-TYPE" 
     TCGA-CG-5721      TCGA-CG-5722      TCGA-CG-5723      TCGA-CG-5724 
  "OR8H3 MUTATED" "OR8H3 WILD-TYPE" "OR8H3 WILD-TYPE" "OR8H3 WILD-TYPE" 
     TCGA-CG-5725      TCGA-CG-5726      TCGA-CG-5727      TCGA-CG-5728 
"OR8H3 WILD-TYPE" "OR8H3 WILD-TYPE" "OR8H3 WILD-TYPE"   "OR8H3 MUTATED" 
     TCGA-CG-5730      TCGA-CG-5732      TCGA-CG-5733      TCGA-CG-5734 
"OR8H3 WILD-TYPE" "OR8H3 WILD-TYPE"   "OR8H3 MUTATED" "OR8H3 WILD-TYPE" 
     TCGA-D7-5577      TCGA-D7-5578      TCGA-D7-5579      TCGA-D7-6518 
"OR8H3 WILD-TYPE"   "OR8H3 MUTATED" "OR8H3 WILD-TYPE" "OR8H3 WILD-TYPE" 
     TCGA-D7-6519      TCGA-D7-6520      TCGA-D7-6521      TCGA-D7-6522 
"OR8H3 WILD-TYPE" "OR8H3 WILD-TYPE" "OR8H3 WILD-TYPE" "OR8H3 WILD-TYPE" 
     TCGA-D7-6524      TCGA-D7-6525      TCGA-D7-6526      TCGA-D7-6527 
"OR8H3 WILD-TYPE"   "OR8H3 MUTATED" "OR8H3 WILD-TYPE" "OR8H3 WILD-TYPE" 
     TCGA-D7-6528      TCGA-D7-6815      TCGA-D7-6817      TCGA-D7-6818 
"OR8H3 WILD-TYPE" "OR8H3 WILD-TYPE" "OR8H3 WILD-TYPE" "OR8H3 WILD-TYPE" 
     TCGA-D7-6820      TCGA-D7-6822      TCGA-EQ-5647      TCGA-F1-6177 
"OR8H3 WILD-TYPE" "OR8H3 WILD-TYPE" "OR8H3 WILD-TYPE" "OR8H3 WILD-TYPE" 
     TCGA-F1-6874 
"OR8H3 WILD-TYPE" 
[1] "hr=" "1.5"
D9V2, continuous
D9V3, binary
[1] "tbl2"
                 cls
clus              [,1] [,2]
  OR8H3 MUTATED      3    7
  OR8H3 WILD-TYPE   43   63
        clus
vv       OR8H3 MUTATED OR8H3 WILD-TYPE
  FEMALE             3              43
  MALE               7              63
D9V4, multiclass
D9V5, multiclass
    clus
vv   OR8H3 MUTATED OR8H3 WILD-TYPE
  T1             0               4
  T2             6              40
  T3             3              38
  T4             1              14
D9V6, multiclass
    clus
vv   OR8H3 MUTATED OR8H3 WILD-TYPE
  N0             4              31
  N1             1              38
  N2             4              15
  N3             1              11
D9V7, multiclass
    clus
vv   OR8H3 MUTATED OR8H3 WILD-TYPE
  M0            10              89
  M1             0              13
  MX             0               4
D9V8, multiclass
     clus
vv    OR8H3 MUTATED OR8H3 WILD-TYPE
  I               3              15
  II              2              30
  III             3              26
  IV              2              19

Clustering(10) Variable = RHOA MUTATION ANALYSIS
D10V1, survival
                sevent
clus2             0  1
  RHOA MUTATED    4  2
  RHOA WILD-TYPE 67 12
  RHOA MUTATED RHOA WILD-TYPE 
             6             79 
  RHOA MUTATED RHOA WILD-TYPE 
             2             12 
$`RHOA MUTATED`
TCGA-BR-6802 TCGA-CG-4465 TCGA-CG-5720 TCGA-D7-6520 TCGA-D7-6521 TCGA-D7-6522 
        0.76         8.98         0.99         9.63         8.19         6.90 

$`RHOA WILD-TYPE`
TCGA-B7-5816 TCGA-B7-5818 TCGA-BR-6452 TCGA-BR-6455 TCGA-BR-6457 TCGA-BR-6458 
        5.62         0.10         0.95         1.41         1.35         1.35 
TCGA-BR-6564 TCGA-BR-6565 TCGA-BR-6566 TCGA-BR-6705 TCGA-BR-6706 TCGA-BR-6707 
        0.82         0.62         0.62         1.71         2.17         0.99 
TCGA-BR-6709 TCGA-BR-6710 TCGA-BR-6801 TCGA-BR-6803 TCGA-BR-6852 TCGA-CD-5798 
        1.22         0.66         1.12         0.66         0.26         0.82 
TCGA-CD-5799 TCGA-CD-5800 TCGA-CD-5801 TCGA-CD-5802 TCGA-CD-5803 TCGA-CD-5813 
        0.69         0.36         0.49         0.30         0.07         0.39 
TCGA-CG-4300 TCGA-CG-4301 TCGA-CG-4304 TCGA-CG-4305 TCGA-CG-4306 TCGA-CG-4436 
       20.02         3.02        27.02        15.95         1.02        52.96 
TCGA-CG-4437 TCGA-CG-4438 TCGA-CG-4440 TCGA-CG-4441 TCGA-CG-4443 TCGA-CG-4444 
        8.05        54.05         4.01        14.01        29.98        47.05 
TCGA-CG-4449 TCGA-CG-4455 TCGA-CG-4460 TCGA-CG-4462 TCGA-CG-4466 TCGA-CG-4469 
       19.07        12.03        21.99         1.02        18.94         7.07 
TCGA-CG-4472 TCGA-CG-4474 TCGA-CG-4477 TCGA-CG-5716 TCGA-CG-5717 TCGA-CG-5718 
       12.00         1.02         1.02         1.02         6.94         1.02 
TCGA-CG-5719 TCGA-CG-5721 TCGA-CG-5722 TCGA-CG-5723 TCGA-CG-5724 TCGA-CG-5725 
        1.02         5.98         0.95        70.06        12.03        15.02 
TCGA-CG-5726 TCGA-CG-5727 TCGA-CG-5728 TCGA-CG-5730 TCGA-CG-5732 TCGA-CG-5733 
       28.96        31.04        65.10         4.01        55.04        21.07 
TCGA-CG-5734 TCGA-D7-5577 TCGA-D7-5578 TCGA-D7-5579 TCGA-D7-6518 TCGA-D7-6519 
        7.99         8.65         3.58         4.54         9.80        15.65 
TCGA-D7-6524 TCGA-D7-6525 TCGA-D7-6526 TCGA-D7-6527 TCGA-D7-6528 TCGA-D7-6815 
        0.69         5.95         6.61         4.14         1.68         3.65 
TCGA-D7-6817 TCGA-D7-6818 TCGA-D7-6820 TCGA-D7-6822 TCGA-EQ-5647 TCGA-F1-6177 
        4.70         4.04         2.93         4.27         0.62         6.54 
TCGA-F1-6874 
        2.01 

  RHOA MUTATED RHOA WILD-TYPE 
          0.76           0.07 
  RHOA MUTATED RHOA WILD-TYPE 
          9.63          70.06 
  RHOA MUTATED RHOA WILD-TYPE 
         7.545          4.010 
[1] "0.8 - 9.6 (7.5)"  "0.1 - 70.1 (4.0)"
    TCGA-B7-5816     TCGA-B7-5818     TCGA-BR-6452     TCGA-BR-6455 
"RHOA WILD-TYPE" "RHOA WILD-TYPE" "RHOA WILD-TYPE" "RHOA WILD-TYPE" 
    TCGA-BR-6457     TCGA-BR-6458     TCGA-BR-6564     TCGA-BR-6565 
"RHOA WILD-TYPE" "RHOA WILD-TYPE" "RHOA WILD-TYPE" "RHOA WILD-TYPE" 
    TCGA-BR-6566     TCGA-BR-6705     TCGA-BR-6706     TCGA-BR-6707 
"RHOA WILD-TYPE" "RHOA WILD-TYPE" "RHOA WILD-TYPE" "RHOA WILD-TYPE" 
    TCGA-BR-6709     TCGA-BR-6710     TCGA-BR-6801     TCGA-BR-6802 
"RHOA WILD-TYPE" "RHOA WILD-TYPE" "RHOA WILD-TYPE"   "RHOA MUTATED" 
    TCGA-BR-6803     TCGA-BR-6852     TCGA-CD-5798     TCGA-CD-5799 
"RHOA WILD-TYPE" "RHOA WILD-TYPE" "RHOA WILD-TYPE" "RHOA WILD-TYPE" 
    TCGA-CD-5800     TCGA-CD-5801     TCGA-CD-5802     TCGA-CD-5803 
"RHOA WILD-TYPE" "RHOA WILD-TYPE" "RHOA WILD-TYPE" "RHOA WILD-TYPE" 
    TCGA-CD-5813     TCGA-CG-4300     TCGA-CG-4301     TCGA-CG-4304 
"RHOA WILD-TYPE" "RHOA WILD-TYPE" "RHOA WILD-TYPE" "RHOA WILD-TYPE" 
    TCGA-CG-4305     TCGA-CG-4306     TCGA-CG-4436     TCGA-CG-4437 
"RHOA WILD-TYPE" "RHOA WILD-TYPE" "RHOA WILD-TYPE" "RHOA WILD-TYPE" 
    TCGA-CG-4438     TCGA-CG-4440     TCGA-CG-4441     TCGA-CG-4443 
"RHOA WILD-TYPE" "RHOA WILD-TYPE" "RHOA WILD-TYPE" "RHOA WILD-TYPE" 
    TCGA-CG-4444     TCGA-CG-4449     TCGA-CG-4455     TCGA-CG-4460 
"RHOA WILD-TYPE" "RHOA WILD-TYPE" "RHOA WILD-TYPE" "RHOA WILD-TYPE" 
    TCGA-CG-4462     TCGA-CG-4465     TCGA-CG-4466     TCGA-CG-4469 
"RHOA WILD-TYPE"   "RHOA MUTATED" "RHOA WILD-TYPE" "RHOA WILD-TYPE" 
    TCGA-CG-4472     TCGA-CG-4474     TCGA-CG-4477     TCGA-CG-5716 
"RHOA WILD-TYPE" "RHOA WILD-TYPE" "RHOA WILD-TYPE" "RHOA WILD-TYPE" 
    TCGA-CG-5717     TCGA-CG-5718     TCGA-CG-5719     TCGA-CG-5720 
"RHOA WILD-TYPE" "RHOA WILD-TYPE" "RHOA WILD-TYPE"   "RHOA MUTATED" 
    TCGA-CG-5721     TCGA-CG-5722     TCGA-CG-5723     TCGA-CG-5724 
"RHOA WILD-TYPE" "RHOA WILD-TYPE" "RHOA WILD-TYPE" "RHOA WILD-TYPE" 
    TCGA-CG-5725     TCGA-CG-5726     TCGA-CG-5727     TCGA-CG-5728 
"RHOA WILD-TYPE" "RHOA WILD-TYPE" "RHOA WILD-TYPE" "RHOA WILD-TYPE" 
    TCGA-CG-5730     TCGA-CG-5732     TCGA-CG-5733     TCGA-CG-5734 
"RHOA WILD-TYPE" "RHOA WILD-TYPE" "RHOA WILD-TYPE" "RHOA WILD-TYPE" 
    TCGA-D7-5577     TCGA-D7-5578     TCGA-D7-5579     TCGA-D7-6518 
"RHOA WILD-TYPE" "RHOA WILD-TYPE" "RHOA WILD-TYPE" "RHOA WILD-TYPE" 
    TCGA-D7-6519     TCGA-D7-6520     TCGA-D7-6521     TCGA-D7-6522 
"RHOA WILD-TYPE"   "RHOA MUTATED"   "RHOA MUTATED"   "RHOA MUTATED" 
    TCGA-D7-6524     TCGA-D7-6525     TCGA-D7-6526     TCGA-D7-6527 
"RHOA WILD-TYPE" "RHOA WILD-TYPE" "RHOA WILD-TYPE" "RHOA WILD-TYPE" 
    TCGA-D7-6528     TCGA-D7-6815     TCGA-D7-6817     TCGA-D7-6818 
"RHOA WILD-TYPE" "RHOA WILD-TYPE" "RHOA WILD-TYPE" "RHOA WILD-TYPE" 
    TCGA-D7-6820     TCGA-D7-6822     TCGA-EQ-5647     TCGA-F1-6177 
"RHOA WILD-TYPE" "RHOA WILD-TYPE" "RHOA WILD-TYPE" "RHOA WILD-TYPE" 
    TCGA-F1-6874 
"RHOA WILD-TYPE" 
    TCGA-B7-5816     TCGA-B7-5818     TCGA-BR-6452     TCGA-BR-6455 
"RHOA WILD-TYPE" "RHOA WILD-TYPE" "RHOA WILD-TYPE" "RHOA WILD-TYPE" 
    TCGA-BR-6457     TCGA-BR-6458     TCGA-BR-6564     TCGA-BR-6565 
"RHOA WILD-TYPE" "RHOA WILD-TYPE" "RHOA WILD-TYPE" "RHOA WILD-TYPE" 
    TCGA-BR-6566     TCGA-BR-6705     TCGA-BR-6706     TCGA-BR-6707 
"RHOA WILD-TYPE" "RHOA WILD-TYPE" "RHOA WILD-TYPE" "RHOA WILD-TYPE" 
    TCGA-BR-6709     TCGA-BR-6710     TCGA-BR-6801     TCGA-BR-6802 
"RHOA WILD-TYPE" "RHOA WILD-TYPE" "RHOA WILD-TYPE"   "RHOA MUTATED" 
    TCGA-BR-6803     TCGA-BR-6852     TCGA-CD-5798     TCGA-CD-5799 
"RHOA WILD-TYPE" "RHOA WILD-TYPE" "RHOA WILD-TYPE" "RHOA WILD-TYPE" 
    TCGA-CD-5800     TCGA-CD-5801     TCGA-CD-5802     TCGA-CD-5803 
"RHOA WILD-TYPE" "RHOA WILD-TYPE" "RHOA WILD-TYPE" "RHOA WILD-TYPE" 
    TCGA-CD-5813     TCGA-CG-4300     TCGA-CG-4301     TCGA-CG-4304 
"RHOA WILD-TYPE" "RHOA WILD-TYPE" "RHOA WILD-TYPE" "RHOA WILD-TYPE" 
    TCGA-CG-4305     TCGA-CG-4306     TCGA-CG-4436     TCGA-CG-4437 
"RHOA WILD-TYPE" "RHOA WILD-TYPE" "RHOA WILD-TYPE" "RHOA WILD-TYPE" 
    TCGA-CG-4438     TCGA-CG-4440     TCGA-CG-4441     TCGA-CG-4443 
"RHOA WILD-TYPE" "RHOA WILD-TYPE" "RHOA WILD-TYPE" "RHOA WILD-TYPE" 
    TCGA-CG-4444     TCGA-CG-4449     TCGA-CG-4455     TCGA-CG-4460 
"RHOA WILD-TYPE" "RHOA WILD-TYPE" "RHOA WILD-TYPE" "RHOA WILD-TYPE" 
    TCGA-CG-4462     TCGA-CG-4465     TCGA-CG-4466     TCGA-CG-4469 
"RHOA WILD-TYPE"   "RHOA MUTATED" "RHOA WILD-TYPE" "RHOA WILD-TYPE" 
    TCGA-CG-4472     TCGA-CG-4474     TCGA-CG-4477     TCGA-CG-5716 
"RHOA WILD-TYPE" "RHOA WILD-TYPE" "RHOA WILD-TYPE" "RHOA WILD-TYPE" 
    TCGA-CG-5717     TCGA-CG-5718     TCGA-CG-5719     TCGA-CG-5720 
"RHOA WILD-TYPE" "RHOA WILD-TYPE" "RHOA WILD-TYPE"   "RHOA MUTATED" 
    TCGA-CG-5721     TCGA-CG-5722     TCGA-CG-5723     TCGA-CG-5724 
"RHOA WILD-TYPE" "RHOA WILD-TYPE" "RHOA WILD-TYPE" "RHOA WILD-TYPE" 
    TCGA-CG-5725     TCGA-CG-5726     TCGA-CG-5727     TCGA-CG-5728 
"RHOA WILD-TYPE" "RHOA WILD-TYPE" "RHOA WILD-TYPE" "RHOA WILD-TYPE" 
    TCGA-CG-5730     TCGA-CG-5732     TCGA-CG-5733     TCGA-CG-5734 
"RHOA WILD-TYPE" "RHOA WILD-TYPE" "RHOA WILD-TYPE" "RHOA WILD-TYPE" 
    TCGA-D7-5577     TCGA-D7-5578     TCGA-D7-5579     TCGA-D7-6518 
"RHOA WILD-TYPE" "RHOA WILD-TYPE" "RHOA WILD-TYPE" "RHOA WILD-TYPE" 
    TCGA-D7-6519     TCGA-D7-6520     TCGA-D7-6521     TCGA-D7-6522 
"RHOA WILD-TYPE"   "RHOA MUTATED"   "RHOA MUTATED"   "RHOA MUTATED" 
    TCGA-D7-6524     TCGA-D7-6525     TCGA-D7-6526     TCGA-D7-6527 
"RHOA WILD-TYPE" "RHOA WILD-TYPE" "RHOA WILD-TYPE" "RHOA WILD-TYPE" 
    TCGA-D7-6528     TCGA-D7-6815     TCGA-D7-6817     TCGA-D7-6818 
"RHOA WILD-TYPE" "RHOA WILD-TYPE" "RHOA WILD-TYPE" "RHOA WILD-TYPE" 
    TCGA-D7-6820     TCGA-D7-6822     TCGA-EQ-5647     TCGA-F1-6177 
"RHOA WILD-TYPE" "RHOA WILD-TYPE" "RHOA WILD-TYPE" "RHOA WILD-TYPE" 
    TCGA-F1-6874 
"RHOA WILD-TYPE" 
    TCGA-B7-5816     TCGA-B7-5818     TCGA-BR-6452     TCGA-BR-6455 
"RHOA WILD-TYPE" "RHOA WILD-TYPE" "RHOA WILD-TYPE" "RHOA WILD-TYPE" 
    TCGA-BR-6457     TCGA-BR-6458     TCGA-BR-6564     TCGA-BR-6565 
"RHOA WILD-TYPE" "RHOA WILD-TYPE" "RHOA WILD-TYPE" "RHOA WILD-TYPE" 
    TCGA-BR-6566     TCGA-BR-6705     TCGA-BR-6706     TCGA-BR-6707 
"RHOA WILD-TYPE" "RHOA WILD-TYPE" "RHOA WILD-TYPE" "RHOA WILD-TYPE" 
    TCGA-BR-6709     TCGA-BR-6710     TCGA-BR-6801     TCGA-BR-6802 
"RHOA WILD-TYPE" "RHOA WILD-TYPE" "RHOA WILD-TYPE"   "RHOA MUTATED" 
    TCGA-BR-6803     TCGA-BR-6852     TCGA-CD-5798     TCGA-CD-5799 
"RHOA WILD-TYPE" "RHOA WILD-TYPE" "RHOA WILD-TYPE" "RHOA WILD-TYPE" 
    TCGA-CD-5800     TCGA-CD-5801     TCGA-CD-5802     TCGA-CD-5803 
"RHOA WILD-TYPE" "RHOA WILD-TYPE" "RHOA WILD-TYPE" "RHOA WILD-TYPE" 
    TCGA-CD-5813     TCGA-CG-4300     TCGA-CG-4301     TCGA-CG-4304 
"RHOA WILD-TYPE" "RHOA WILD-TYPE" "RHOA WILD-TYPE" "RHOA WILD-TYPE" 
    TCGA-CG-4305     TCGA-CG-4306     TCGA-CG-4436     TCGA-CG-4437 
"RHOA WILD-TYPE" "RHOA WILD-TYPE" "RHOA WILD-TYPE" "RHOA WILD-TYPE" 
    TCGA-CG-4438     TCGA-CG-4440     TCGA-CG-4441     TCGA-CG-4443 
"RHOA WILD-TYPE" "RHOA WILD-TYPE" "RHOA WILD-TYPE" "RHOA WILD-TYPE" 
    TCGA-CG-4444     TCGA-CG-4449     TCGA-CG-4455     TCGA-CG-4460 
"RHOA WILD-TYPE" "RHOA WILD-TYPE" "RHOA WILD-TYPE" "RHOA WILD-TYPE" 
    TCGA-CG-4462     TCGA-CG-4465     TCGA-CG-4466     TCGA-CG-4469 
"RHOA WILD-TYPE"   "RHOA MUTATED" "RHOA WILD-TYPE" "RHOA WILD-TYPE" 
    TCGA-CG-4472     TCGA-CG-4474     TCGA-CG-4477     TCGA-CG-5716 
"RHOA WILD-TYPE" "RHOA WILD-TYPE" "RHOA WILD-TYPE" "RHOA WILD-TYPE" 
    TCGA-CG-5717     TCGA-CG-5718     TCGA-CG-5719     TCGA-CG-5720 
"RHOA WILD-TYPE" "RHOA WILD-TYPE" "RHOA WILD-TYPE"   "RHOA MUTATED" 
    TCGA-CG-5721     TCGA-CG-5722     TCGA-CG-5723     TCGA-CG-5724 
"RHOA WILD-TYPE" "RHOA WILD-TYPE" "RHOA WILD-TYPE" "RHOA WILD-TYPE" 
    TCGA-CG-5725     TCGA-CG-5726     TCGA-CG-5727     TCGA-CG-5728 
"RHOA WILD-TYPE" "RHOA WILD-TYPE" "RHOA WILD-TYPE" "RHOA WILD-TYPE" 
    TCGA-CG-5730     TCGA-CG-5732     TCGA-CG-5733     TCGA-CG-5734 
"RHOA WILD-TYPE" "RHOA WILD-TYPE" "RHOA WILD-TYPE" "RHOA WILD-TYPE" 
    TCGA-D7-5577     TCGA-D7-5578     TCGA-D7-5579     TCGA-D7-6518 
"RHOA WILD-TYPE" "RHOA WILD-TYPE" "RHOA WILD-TYPE" "RHOA WILD-TYPE" 
    TCGA-D7-6519     TCGA-D7-6520     TCGA-D7-6521     TCGA-D7-6522 
"RHOA WILD-TYPE"   "RHOA MUTATED"   "RHOA MUTATED"   "RHOA MUTATED" 
    TCGA-D7-6524     TCGA-D7-6525     TCGA-D7-6526     TCGA-D7-6527 
"RHOA WILD-TYPE" "RHOA WILD-TYPE" "RHOA WILD-TYPE" "RHOA WILD-TYPE" 
    TCGA-D7-6528     TCGA-D7-6815     TCGA-D7-6817     TCGA-D7-6818 
"RHOA WILD-TYPE" "RHOA WILD-TYPE" "RHOA WILD-TYPE" "RHOA WILD-TYPE" 
    TCGA-D7-6820     TCGA-D7-6822     TCGA-EQ-5647     TCGA-F1-6177 
"RHOA WILD-TYPE" "RHOA WILD-TYPE" "RHOA WILD-TYPE" "RHOA WILD-TYPE" 
    TCGA-F1-6874 
"RHOA WILD-TYPE" 
[1] "hr=" "3.6"
D10V2, continuous
D10V3, binary
[1] "tbl2"
                cls
clus             [,1] [,2]
  RHOA MUTATED      2    5
  RHOA WILD-TYPE   44   65
        clus
vv       RHOA MUTATED RHOA WILD-TYPE
  FEMALE            2             44
  MALE              5             65
D10V4, multiclass
D10V5, multiclass
    clus
vv   RHOA MUTATED RHOA WILD-TYPE
  T1            0              4
  T2            4             42
  T3            1             40
  T4            1             14
D10V6, multiclass
    clus
vv   RHOA MUTATED RHOA WILD-TYPE
  N0            2             33
  N1            2             37
  N2            2             17
  N3            1             11
D10V7, multiclass
    clus
vv   RHOA MUTATED RHOA WILD-TYPE
  M0            6             93
  M1            1             12
  MX            0              4
D10V8, multiclass
     clus
vv    RHOA MUTATED RHOA WILD-TYPE
  I              2             16
  II             0             32
  III            3             26
  IV             1             20

Clustering(11) Variable = TRIM48 MUTATION ANALYSIS
D11V1, survival
                  sevent
clus2               0  1
  TRIM48 MUTATED    1  3
  TRIM48 WILD-TYPE 70 11
  TRIM48 MUTATED TRIM48 WILD-TYPE 
               4               81 
  TRIM48 MUTATED TRIM48 WILD-TYPE 
               3               11 
$`TRIM48 MUTATED`
TCGA-CG-4306 TCGA-CG-5723 TCGA-CG-5726 TCGA-CG-5733 
        1.02        70.06        28.96        21.07 

$`TRIM48 WILD-TYPE`
TCGA-B7-5816 TCGA-B7-5818 TCGA-BR-6452 TCGA-BR-6455 TCGA-BR-6457 TCGA-BR-6458 
        5.62         0.10         0.95         1.41         1.35         1.35 
TCGA-BR-6564 TCGA-BR-6565 TCGA-BR-6566 TCGA-BR-6705 TCGA-BR-6706 TCGA-BR-6707 
        0.82         0.62         0.62         1.71         2.17         0.99 
TCGA-BR-6709 TCGA-BR-6710 TCGA-BR-6801 TCGA-BR-6802 TCGA-BR-6803 TCGA-BR-6852 
        1.22         0.66         1.12         0.76         0.66         0.26 
TCGA-CD-5798 TCGA-CD-5799 TCGA-CD-5800 TCGA-CD-5801 TCGA-CD-5802 TCGA-CD-5803 
        0.82         0.69         0.36         0.49         0.30         0.07 
TCGA-CD-5813 TCGA-CG-4300 TCGA-CG-4301 TCGA-CG-4304 TCGA-CG-4305 TCGA-CG-4436 
        0.39        20.02         3.02        27.02        15.95        52.96 
TCGA-CG-4437 TCGA-CG-4438 TCGA-CG-4440 TCGA-CG-4441 TCGA-CG-4443 TCGA-CG-4444 
        8.05        54.05         4.01        14.01        29.98        47.05 
TCGA-CG-4449 TCGA-CG-4455 TCGA-CG-4460 TCGA-CG-4462 TCGA-CG-4465 TCGA-CG-4466 
       19.07        12.03        21.99         1.02         8.98        18.94 
TCGA-CG-4469 TCGA-CG-4472 TCGA-CG-4474 TCGA-CG-4477 TCGA-CG-5716 TCGA-CG-5717 
        7.07        12.00         1.02         1.02         1.02         6.94 
TCGA-CG-5718 TCGA-CG-5719 TCGA-CG-5720 TCGA-CG-5721 TCGA-CG-5722 TCGA-CG-5724 
        1.02         1.02         0.99         5.98         0.95        12.03 
TCGA-CG-5725 TCGA-CG-5727 TCGA-CG-5728 TCGA-CG-5730 TCGA-CG-5732 TCGA-CG-5734 
       15.02        31.04        65.10         4.01        55.04         7.99 
TCGA-D7-5577 TCGA-D7-5578 TCGA-D7-5579 TCGA-D7-6518 TCGA-D7-6519 TCGA-D7-6520 
        8.65         3.58         4.54         9.80        15.65         9.63 
TCGA-D7-6521 TCGA-D7-6522 TCGA-D7-6524 TCGA-D7-6525 TCGA-D7-6526 TCGA-D7-6527 
        8.19         6.90         0.69         5.95         6.61         4.14 
TCGA-D7-6528 TCGA-D7-6815 TCGA-D7-6817 TCGA-D7-6818 TCGA-D7-6820 TCGA-D7-6822 
        1.68         3.65         4.70         4.04         2.93         4.27 
TCGA-EQ-5647 TCGA-F1-6177 TCGA-F1-6874 
        0.62         6.54         2.01 

  TRIM48 MUTATED TRIM48 WILD-TYPE 
            1.02             0.07 
  TRIM48 MUTATED TRIM48 WILD-TYPE 
           70.06            65.10 
  TRIM48 MUTATED TRIM48 WILD-TYPE 
          25.015            4.010 
[1] "1.0 - 70.1 (25.0)" "0.1 - 65.1 (4.0)" 
      TCGA-B7-5816       TCGA-B7-5818       TCGA-BR-6452       TCGA-BR-6455 
"TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" 
      TCGA-BR-6457       TCGA-BR-6458       TCGA-BR-6564       TCGA-BR-6565 
"TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" 
      TCGA-BR-6566       TCGA-BR-6705       TCGA-BR-6706       TCGA-BR-6707 
"TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" 
      TCGA-BR-6709       TCGA-BR-6710       TCGA-BR-6801       TCGA-BR-6802 
"TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" 
      TCGA-BR-6803       TCGA-BR-6852       TCGA-CD-5798       TCGA-CD-5799 
"TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" 
      TCGA-CD-5800       TCGA-CD-5801       TCGA-CD-5802       TCGA-CD-5803 
"TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" 
      TCGA-CD-5813       TCGA-CG-4300       TCGA-CG-4301       TCGA-CG-4304 
"TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" 
      TCGA-CG-4305       TCGA-CG-4306       TCGA-CG-4436       TCGA-CG-4437 
"TRIM48 WILD-TYPE"   "TRIM48 MUTATED" "TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" 
      TCGA-CG-4438       TCGA-CG-4440       TCGA-CG-4441       TCGA-CG-4443 
"TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" 
      TCGA-CG-4444       TCGA-CG-4449       TCGA-CG-4455       TCGA-CG-4460 
"TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" 
      TCGA-CG-4462       TCGA-CG-4465       TCGA-CG-4466       TCGA-CG-4469 
"TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" 
      TCGA-CG-4472       TCGA-CG-4474       TCGA-CG-4477       TCGA-CG-5716 
"TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" 
      TCGA-CG-5717       TCGA-CG-5718       TCGA-CG-5719       TCGA-CG-5720 
"TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" 
      TCGA-CG-5721       TCGA-CG-5722       TCGA-CG-5723       TCGA-CG-5724 
"TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE"   "TRIM48 MUTATED" "TRIM48 WILD-TYPE" 
      TCGA-CG-5725       TCGA-CG-5726       TCGA-CG-5727       TCGA-CG-5728 
"TRIM48 WILD-TYPE"   "TRIM48 MUTATED" "TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" 
      TCGA-CG-5730       TCGA-CG-5732       TCGA-CG-5733       TCGA-CG-5734 
"TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE"   "TRIM48 MUTATED" "TRIM48 WILD-TYPE" 
      TCGA-D7-5577       TCGA-D7-5578       TCGA-D7-5579       TCGA-D7-6518 
"TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" 
      TCGA-D7-6519       TCGA-D7-6520       TCGA-D7-6521       TCGA-D7-6522 
"TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" 
      TCGA-D7-6524       TCGA-D7-6525       TCGA-D7-6526       TCGA-D7-6527 
"TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" 
      TCGA-D7-6528       TCGA-D7-6815       TCGA-D7-6817       TCGA-D7-6818 
"TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" 
      TCGA-D7-6820       TCGA-D7-6822       TCGA-EQ-5647       TCGA-F1-6177 
"TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" 
      TCGA-F1-6874 
"TRIM48 WILD-TYPE" 
      TCGA-B7-5816       TCGA-B7-5818       TCGA-BR-6452       TCGA-BR-6455 
"TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" 
      TCGA-BR-6457       TCGA-BR-6458       TCGA-BR-6564       TCGA-BR-6565 
"TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" 
      TCGA-BR-6566       TCGA-BR-6705       TCGA-BR-6706       TCGA-BR-6707 
"TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" 
      TCGA-BR-6709       TCGA-BR-6710       TCGA-BR-6801       TCGA-BR-6802 
"TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" 
      TCGA-BR-6803       TCGA-BR-6852       TCGA-CD-5798       TCGA-CD-5799 
"TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" 
      TCGA-CD-5800       TCGA-CD-5801       TCGA-CD-5802       TCGA-CD-5803 
"TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" 
      TCGA-CD-5813       TCGA-CG-4300       TCGA-CG-4301       TCGA-CG-4304 
"TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" 
      TCGA-CG-4305       TCGA-CG-4306       TCGA-CG-4436       TCGA-CG-4437 
"TRIM48 WILD-TYPE"   "TRIM48 MUTATED" "TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" 
      TCGA-CG-4438       TCGA-CG-4440       TCGA-CG-4441       TCGA-CG-4443 
"TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" 
      TCGA-CG-4444       TCGA-CG-4449       TCGA-CG-4455       TCGA-CG-4460 
"TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" 
      TCGA-CG-4462       TCGA-CG-4465       TCGA-CG-4466       TCGA-CG-4469 
"TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" 
      TCGA-CG-4472       TCGA-CG-4474       TCGA-CG-4477       TCGA-CG-5716 
"TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" 
      TCGA-CG-5717       TCGA-CG-5718       TCGA-CG-5719       TCGA-CG-5720 
"TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" 
      TCGA-CG-5721       TCGA-CG-5722       TCGA-CG-5723       TCGA-CG-5724 
"TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE"   "TRIM48 MUTATED" "TRIM48 WILD-TYPE" 
      TCGA-CG-5725       TCGA-CG-5726       TCGA-CG-5727       TCGA-CG-5728 
"TRIM48 WILD-TYPE"   "TRIM48 MUTATED" "TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" 
      TCGA-CG-5730       TCGA-CG-5732       TCGA-CG-5733       TCGA-CG-5734 
"TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE"   "TRIM48 MUTATED" "TRIM48 WILD-TYPE" 
      TCGA-D7-5577       TCGA-D7-5578       TCGA-D7-5579       TCGA-D7-6518 
"TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" 
      TCGA-D7-6519       TCGA-D7-6520       TCGA-D7-6521       TCGA-D7-6522 
"TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" 
      TCGA-D7-6524       TCGA-D7-6525       TCGA-D7-6526       TCGA-D7-6527 
"TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" 
      TCGA-D7-6528       TCGA-D7-6815       TCGA-D7-6817       TCGA-D7-6818 
"TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" 
      TCGA-D7-6820       TCGA-D7-6822       TCGA-EQ-5647       TCGA-F1-6177 
"TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" 
      TCGA-F1-6874 
"TRIM48 WILD-TYPE" 
      TCGA-B7-5816       TCGA-B7-5818       TCGA-BR-6452       TCGA-BR-6455 
"TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" 
      TCGA-BR-6457       TCGA-BR-6458       TCGA-BR-6564       TCGA-BR-6565 
"TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" 
      TCGA-BR-6566       TCGA-BR-6705       TCGA-BR-6706       TCGA-BR-6707 
"TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" 
      TCGA-BR-6709       TCGA-BR-6710       TCGA-BR-6801       TCGA-BR-6802 
"TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" 
      TCGA-BR-6803       TCGA-BR-6852       TCGA-CD-5798       TCGA-CD-5799 
"TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" 
      TCGA-CD-5800       TCGA-CD-5801       TCGA-CD-5802       TCGA-CD-5803 
"TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" 
      TCGA-CD-5813       TCGA-CG-4300       TCGA-CG-4301       TCGA-CG-4304 
"TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" 
      TCGA-CG-4305       TCGA-CG-4306       TCGA-CG-4436       TCGA-CG-4437 
"TRIM48 WILD-TYPE"   "TRIM48 MUTATED" "TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" 
      TCGA-CG-4438       TCGA-CG-4440       TCGA-CG-4441       TCGA-CG-4443 
"TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" 
      TCGA-CG-4444       TCGA-CG-4449       TCGA-CG-4455       TCGA-CG-4460 
"TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" 
      TCGA-CG-4462       TCGA-CG-4465       TCGA-CG-4466       TCGA-CG-4469 
"TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" 
      TCGA-CG-4472       TCGA-CG-4474       TCGA-CG-4477       TCGA-CG-5716 
"TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" 
      TCGA-CG-5717       TCGA-CG-5718       TCGA-CG-5719       TCGA-CG-5720 
"TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" 
      TCGA-CG-5721       TCGA-CG-5722       TCGA-CG-5723       TCGA-CG-5724 
"TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE"   "TRIM48 MUTATED" "TRIM48 WILD-TYPE" 
      TCGA-CG-5725       TCGA-CG-5726       TCGA-CG-5727       TCGA-CG-5728 
"TRIM48 WILD-TYPE"   "TRIM48 MUTATED" "TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" 
      TCGA-CG-5730       TCGA-CG-5732       TCGA-CG-5733       TCGA-CG-5734 
"TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE"   "TRIM48 MUTATED" "TRIM48 WILD-TYPE" 
      TCGA-D7-5577       TCGA-D7-5578       TCGA-D7-5579       TCGA-D7-6518 
"TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" 
      TCGA-D7-6519       TCGA-D7-6520       TCGA-D7-6521       TCGA-D7-6522 
"TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" 
      TCGA-D7-6524       TCGA-D7-6525       TCGA-D7-6526       TCGA-D7-6527 
"TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" 
      TCGA-D7-6528       TCGA-D7-6815       TCGA-D7-6817       TCGA-D7-6818 
"TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" 
      TCGA-D7-6820       TCGA-D7-6822       TCGA-EQ-5647       TCGA-F1-6177 
"TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" 
      TCGA-F1-6874 
"TRIM48 WILD-TYPE" 
[1] "hr=" "1.9"
D11V2, continuous
D11V3, binary
[1] "tbl2"
                  cls
clus               [,1] [,2]
  TRIM48 MUTATED      6    4
  TRIM48 WILD-TYPE   40   66
        clus
vv       TRIM48 MUTATED TRIM48 WILD-TYPE
  FEMALE              6               40
  MALE                4               66
D11V4, multiclass
D11V5, multiclass
    clus
vv   TRIM48 MUTATED TRIM48 WILD-TYPE
  T1              2                2
  T2              3               43
  T3              4               37
  T4              1               14
D11V6, multiclass
    clus
vv   TRIM48 MUTATED TRIM48 WILD-TYPE
  N0              2               33
  N1              4               35
  N2              2               17
  N3              0               12
D11V7, multiclass
    clus
vv   TRIM48 MUTATED TRIM48 WILD-TYPE
  M0              7               92
  M1              1               12
  MX              2                2
D11V8, multiclass
     clus
vv    TRIM48 MUTATED TRIM48 WILD-TYPE
  I                1               17
  II               1               31
  III              5               24
  IV               1               20

Clustering(12) Variable = ZNF804B MUTATION ANALYSIS
D12V1, survival
                   sevent
clus2                0  1
  ZNF804B MUTATED   10  3
  ZNF804B WILD-TYPE 61 11
  ZNF804B MUTATED ZNF804B WILD-TYPE 
               13                72 
  ZNF804B MUTATED ZNF804B WILD-TYPE 
                3                11 
$`ZNF804B MUTATED`
TCGA-BR-6452 TCGA-CG-4301 TCGA-CG-4305 TCGA-CG-4436 TCGA-CG-4437 TCGA-CG-4440 
        0.95         3.02        15.95        52.96         8.05         4.01 
TCGA-CG-4469 TCGA-CG-5721 TCGA-CG-5723 TCGA-CG-5724 TCGA-CG-5728 TCGA-D7-6527 
        7.07         5.98        70.06        12.03        65.10         4.14 
TCGA-D7-6822 
        4.27 

$`ZNF804B WILD-TYPE`
TCGA-B7-5816 TCGA-B7-5818 TCGA-BR-6455 TCGA-BR-6457 TCGA-BR-6458 TCGA-BR-6564 
        5.62         0.10         1.41         1.35         1.35         0.82 
TCGA-BR-6565 TCGA-BR-6566 TCGA-BR-6705 TCGA-BR-6706 TCGA-BR-6707 TCGA-BR-6709 
        0.62         0.62         1.71         2.17         0.99         1.22 
TCGA-BR-6710 TCGA-BR-6801 TCGA-BR-6802 TCGA-BR-6803 TCGA-BR-6852 TCGA-CD-5798 
        0.66         1.12         0.76         0.66         0.26         0.82 
TCGA-CD-5799 TCGA-CD-5800 TCGA-CD-5801 TCGA-CD-5802 TCGA-CD-5803 TCGA-CD-5813 
        0.69         0.36         0.49         0.30         0.07         0.39 
TCGA-CG-4300 TCGA-CG-4304 TCGA-CG-4306 TCGA-CG-4438 TCGA-CG-4441 TCGA-CG-4443 
       20.02        27.02         1.02        54.05        14.01        29.98 
TCGA-CG-4444 TCGA-CG-4449 TCGA-CG-4455 TCGA-CG-4460 TCGA-CG-4462 TCGA-CG-4465 
       47.05        19.07        12.03        21.99         1.02         8.98 
TCGA-CG-4466 TCGA-CG-4472 TCGA-CG-4474 TCGA-CG-4477 TCGA-CG-5716 TCGA-CG-5717 
       18.94        12.00         1.02         1.02         1.02         6.94 
TCGA-CG-5718 TCGA-CG-5719 TCGA-CG-5720 TCGA-CG-5722 TCGA-CG-5725 TCGA-CG-5726 
        1.02         1.02         0.99         0.95        15.02        28.96 
TCGA-CG-5727 TCGA-CG-5730 TCGA-CG-5732 TCGA-CG-5733 TCGA-CG-5734 TCGA-D7-5577 
       31.04         4.01        55.04        21.07         7.99         8.65 
TCGA-D7-5578 TCGA-D7-5579 TCGA-D7-6518 TCGA-D7-6519 TCGA-D7-6520 TCGA-D7-6521 
        3.58         4.54         9.80        15.65         9.63         8.19 
TCGA-D7-6522 TCGA-D7-6524 TCGA-D7-6525 TCGA-D7-6526 TCGA-D7-6528 TCGA-D7-6815 
        6.90         0.69         5.95         6.61         1.68         3.65 
TCGA-D7-6817 TCGA-D7-6818 TCGA-D7-6820 TCGA-EQ-5647 TCGA-F1-6177 TCGA-F1-6874 
        4.70         4.04         2.93         0.62         6.54         2.01 

  ZNF804B MUTATED ZNF804B WILD-TYPE 
             0.95              0.07 
  ZNF804B MUTATED ZNF804B WILD-TYPE 
            70.06             55.04 
  ZNF804B MUTATED ZNF804B WILD-TYPE 
             7.07              2.55 
[1] "0.9 - 70.1 (7.1)" "0.1 - 55.0 (2.5)"
       TCGA-B7-5816        TCGA-B7-5818        TCGA-BR-6452        TCGA-BR-6455 
"ZNF804B WILD-TYPE" "ZNF804B WILD-TYPE"   "ZNF804B MUTATED" "ZNF804B WILD-TYPE" 
       TCGA-BR-6457        TCGA-BR-6458        TCGA-BR-6564        TCGA-BR-6565 
"ZNF804B WILD-TYPE" "ZNF804B WILD-TYPE" "ZNF804B WILD-TYPE" "ZNF804B WILD-TYPE" 
       TCGA-BR-6566        TCGA-BR-6705        TCGA-BR-6706        TCGA-BR-6707 
"ZNF804B WILD-TYPE" "ZNF804B WILD-TYPE" "ZNF804B WILD-TYPE" "ZNF804B WILD-TYPE" 
       TCGA-BR-6709        TCGA-BR-6710        TCGA-BR-6801        TCGA-BR-6802 
"ZNF804B WILD-TYPE" "ZNF804B WILD-TYPE" "ZNF804B WILD-TYPE" "ZNF804B WILD-TYPE" 
       TCGA-BR-6803        TCGA-BR-6852        TCGA-CD-5798        TCGA-CD-5799 
"ZNF804B WILD-TYPE" "ZNF804B WILD-TYPE" "ZNF804B WILD-TYPE" "ZNF804B WILD-TYPE" 
       TCGA-CD-5800        TCGA-CD-5801        TCGA-CD-5802        TCGA-CD-5803 
"ZNF804B WILD-TYPE" "ZNF804B WILD-TYPE" "ZNF804B WILD-TYPE" "ZNF804B WILD-TYPE" 
       TCGA-CD-5813        TCGA-CG-4300        TCGA-CG-4301        TCGA-CG-4304 
"ZNF804B WILD-TYPE" "ZNF804B WILD-TYPE"   "ZNF804B MUTATED" "ZNF804B WILD-TYPE" 
       TCGA-CG-4305        TCGA-CG-4306        TCGA-CG-4436        TCGA-CG-4437 
  "ZNF804B MUTATED" "ZNF804B WILD-TYPE"   "ZNF804B MUTATED"   "ZNF804B MUTATED" 
       TCGA-CG-4438        TCGA-CG-4440        TCGA-CG-4441        TCGA-CG-4443 
"ZNF804B WILD-TYPE"   "ZNF804B MUTATED" "ZNF804B WILD-TYPE" "ZNF804B WILD-TYPE" 
       TCGA-CG-4444        TCGA-CG-4449        TCGA-CG-4455        TCGA-CG-4460 
"ZNF804B WILD-TYPE" "ZNF804B WILD-TYPE" "ZNF804B WILD-TYPE" "ZNF804B WILD-TYPE" 
       TCGA-CG-4462        TCGA-CG-4465        TCGA-CG-4466        TCGA-CG-4469 
"ZNF804B WILD-TYPE" "ZNF804B WILD-TYPE" "ZNF804B WILD-TYPE"   "ZNF804B MUTATED" 
       TCGA-CG-4472        TCGA-CG-4474        TCGA-CG-4477        TCGA-CG-5716 
"ZNF804B WILD-TYPE" "ZNF804B WILD-TYPE" "ZNF804B WILD-TYPE" "ZNF804B WILD-TYPE" 
       TCGA-CG-5717        TCGA-CG-5718        TCGA-CG-5719        TCGA-CG-5720 
"ZNF804B WILD-TYPE" "ZNF804B WILD-TYPE" "ZNF804B WILD-TYPE" "ZNF804B WILD-TYPE" 
       TCGA-CG-5721        TCGA-CG-5722        TCGA-CG-5723        TCGA-CG-5724 
  "ZNF804B MUTATED" "ZNF804B WILD-TYPE"   "ZNF804B MUTATED"   "ZNF804B MUTATED" 
       TCGA-CG-5725        TCGA-CG-5726        TCGA-CG-5727        TCGA-CG-5728 
"ZNF804B WILD-TYPE" "ZNF804B WILD-TYPE" "ZNF804B WILD-TYPE"   "ZNF804B MUTATED" 
       TCGA-CG-5730        TCGA-CG-5732        TCGA-CG-5733        TCGA-CG-5734 
"ZNF804B WILD-TYPE" "ZNF804B WILD-TYPE" "ZNF804B WILD-TYPE" "ZNF804B WILD-TYPE" 
       TCGA-D7-5577        TCGA-D7-5578        TCGA-D7-5579        TCGA-D7-6518 
"ZNF804B WILD-TYPE" "ZNF804B WILD-TYPE" "ZNF804B WILD-TYPE" "ZNF804B WILD-TYPE" 
       TCGA-D7-6519        TCGA-D7-6520        TCGA-D7-6521        TCGA-D7-6522 
"ZNF804B WILD-TYPE" "ZNF804B WILD-TYPE" "ZNF804B WILD-TYPE" "ZNF804B WILD-TYPE" 
       TCGA-D7-6524        TCGA-D7-6525        TCGA-D7-6526        TCGA-D7-6527 
"ZNF804B WILD-TYPE" "ZNF804B WILD-TYPE" "ZNF804B WILD-TYPE"   "ZNF804B MUTATED" 
       TCGA-D7-6528        TCGA-D7-6815        TCGA-D7-6817        TCGA-D7-6818 
"ZNF804B WILD-TYPE" "ZNF804B WILD-TYPE" "ZNF804B WILD-TYPE" "ZNF804B WILD-TYPE" 
       TCGA-D7-6820        TCGA-D7-6822        TCGA-EQ-5647        TCGA-F1-6177 
"ZNF804B WILD-TYPE"   "ZNF804B MUTATED" "ZNF804B WILD-TYPE" "ZNF804B WILD-TYPE" 
       TCGA-F1-6874 
"ZNF804B WILD-TYPE" 
       TCGA-B7-5816        TCGA-B7-5818        TCGA-BR-6452        TCGA-BR-6455 
"ZNF804B WILD-TYPE" "ZNF804B WILD-TYPE"   "ZNF804B MUTATED" "ZNF804B WILD-TYPE" 
       TCGA-BR-6457        TCGA-BR-6458        TCGA-BR-6564        TCGA-BR-6565 
"ZNF804B WILD-TYPE" "ZNF804B WILD-TYPE" "ZNF804B WILD-TYPE" "ZNF804B WILD-TYPE" 
       TCGA-BR-6566        TCGA-BR-6705        TCGA-BR-6706        TCGA-BR-6707 
"ZNF804B WILD-TYPE" "ZNF804B WILD-TYPE" "ZNF804B WILD-TYPE" "ZNF804B WILD-TYPE" 
       TCGA-BR-6709        TCGA-BR-6710        TCGA-BR-6801        TCGA-BR-6802 
"ZNF804B WILD-TYPE" "ZNF804B WILD-TYPE" "ZNF804B WILD-TYPE" "ZNF804B WILD-TYPE" 
       TCGA-BR-6803        TCGA-BR-6852        TCGA-CD-5798        TCGA-CD-5799 
"ZNF804B WILD-TYPE" "ZNF804B WILD-TYPE" "ZNF804B WILD-TYPE" "ZNF804B WILD-TYPE" 
       TCGA-CD-5800        TCGA-CD-5801        TCGA-CD-5802        TCGA-CD-5803 
"ZNF804B WILD-TYPE" "ZNF804B WILD-TYPE" "ZNF804B WILD-TYPE" "ZNF804B WILD-TYPE" 
       TCGA-CD-5813        TCGA-CG-4300        TCGA-CG-4301        TCGA-CG-4304 
"ZNF804B WILD-TYPE" "ZNF804B WILD-TYPE"   "ZNF804B MUTATED" "ZNF804B WILD-TYPE" 
       TCGA-CG-4305        TCGA-CG-4306        TCGA-CG-4436        TCGA-CG-4437 
  "ZNF804B MUTATED" "ZNF804B WILD-TYPE"   "ZNF804B MUTATED"   "ZNF804B MUTATED" 
       TCGA-CG-4438        TCGA-CG-4440        TCGA-CG-4441        TCGA-CG-4443 
"ZNF804B WILD-TYPE"   "ZNF804B MUTATED" "ZNF804B WILD-TYPE" "ZNF804B WILD-TYPE" 
       TCGA-CG-4444        TCGA-CG-4449        TCGA-CG-4455        TCGA-CG-4460 
"ZNF804B WILD-TYPE" "ZNF804B WILD-TYPE" "ZNF804B WILD-TYPE" "ZNF804B WILD-TYPE" 
       TCGA-CG-4462        TCGA-CG-4465        TCGA-CG-4466        TCGA-CG-4469 
"ZNF804B WILD-TYPE" "ZNF804B WILD-TYPE" "ZNF804B WILD-TYPE"   "ZNF804B MUTATED" 
       TCGA-CG-4472        TCGA-CG-4474        TCGA-CG-4477        TCGA-CG-5716 
"ZNF804B WILD-TYPE" "ZNF804B WILD-TYPE" "ZNF804B WILD-TYPE" "ZNF804B WILD-TYPE" 
       TCGA-CG-5717        TCGA-CG-5718        TCGA-CG-5719        TCGA-CG-5720 
"ZNF804B WILD-TYPE" "ZNF804B WILD-TYPE" "ZNF804B WILD-TYPE" "ZNF804B WILD-TYPE" 
       TCGA-CG-5721        TCGA-CG-5722        TCGA-CG-5723        TCGA-CG-5724 
  "ZNF804B MUTATED" "ZNF804B WILD-TYPE"   "ZNF804B MUTATED"   "ZNF804B MUTATED" 
       TCGA-CG-5725        TCGA-CG-5726        TCGA-CG-5727        TCGA-CG-5728 
"ZNF804B WILD-TYPE" "ZNF804B WILD-TYPE" "ZNF804B WILD-TYPE"   "ZNF804B MUTATED" 
       TCGA-CG-5730        TCGA-CG-5732        TCGA-CG-5733        TCGA-CG-5734 
"ZNF804B WILD-TYPE" "ZNF804B WILD-TYPE" "ZNF804B WILD-TYPE" "ZNF804B WILD-TYPE" 
       TCGA-D7-5577        TCGA-D7-5578        TCGA-D7-5579        TCGA-D7-6518 
"ZNF804B WILD-TYPE" "ZNF804B WILD-TYPE" "ZNF804B WILD-TYPE" "ZNF804B WILD-TYPE" 
       TCGA-D7-6519        TCGA-D7-6520        TCGA-D7-6521        TCGA-D7-6522 
"ZNF804B WILD-TYPE" "ZNF804B WILD-TYPE" "ZNF804B WILD-TYPE" "ZNF804B WILD-TYPE" 
       TCGA-D7-6524        TCGA-D7-6525        TCGA-D7-6526        TCGA-D7-6527 
"ZNF804B WILD-TYPE" "ZNF804B WILD-TYPE" "ZNF804B WILD-TYPE"   "ZNF804B MUTATED" 
       TCGA-D7-6528        TCGA-D7-6815        TCGA-D7-6817        TCGA-D7-6818 
"ZNF804B WILD-TYPE" "ZNF804B WILD-TYPE" "ZNF804B WILD-TYPE" "ZNF804B WILD-TYPE" 
       TCGA-D7-6820        TCGA-D7-6822        TCGA-EQ-5647        TCGA-F1-6177 
"ZNF804B WILD-TYPE"   "ZNF804B MUTATED" "ZNF804B WILD-TYPE" "ZNF804B WILD-TYPE" 
       TCGA-F1-6874 
"ZNF804B WILD-TYPE" 
       TCGA-B7-5816        TCGA-B7-5818        TCGA-BR-6452        TCGA-BR-6455 
"ZNF804B WILD-TYPE" "ZNF804B WILD-TYPE"   "ZNF804B MUTATED" "ZNF804B WILD-TYPE" 
       TCGA-BR-6457        TCGA-BR-6458        TCGA-BR-6564        TCGA-BR-6565 
"ZNF804B WILD-TYPE" "ZNF804B WILD-TYPE" "ZNF804B WILD-TYPE" "ZNF804B WILD-TYPE" 
       TCGA-BR-6566        TCGA-BR-6705        TCGA-BR-6706        TCGA-BR-6707 
"ZNF804B WILD-TYPE" "ZNF804B WILD-TYPE" "ZNF804B WILD-TYPE" "ZNF804B WILD-TYPE" 
       TCGA-BR-6709        TCGA-BR-6710        TCGA-BR-6801        TCGA-BR-6802 
"ZNF804B WILD-TYPE" "ZNF804B WILD-TYPE" "ZNF804B WILD-TYPE" "ZNF804B WILD-TYPE" 
       TCGA-BR-6803        TCGA-BR-6852        TCGA-CD-5798        TCGA-CD-5799 
"ZNF804B WILD-TYPE" "ZNF804B WILD-TYPE" "ZNF804B WILD-TYPE" "ZNF804B WILD-TYPE" 
       TCGA-CD-5800        TCGA-CD-5801        TCGA-CD-5802        TCGA-CD-5803 
"ZNF804B WILD-TYPE" "ZNF804B WILD-TYPE" "ZNF804B WILD-TYPE" "ZNF804B WILD-TYPE" 
       TCGA-CD-5813        TCGA-CG-4300        TCGA-CG-4301        TCGA-CG-4304 
"ZNF804B WILD-TYPE" "ZNF804B WILD-TYPE"   "ZNF804B MUTATED" "ZNF804B WILD-TYPE" 
       TCGA-CG-4305        TCGA-CG-4306        TCGA-CG-4436        TCGA-CG-4437 
  "ZNF804B MUTATED" "ZNF804B WILD-TYPE"   "ZNF804B MUTATED"   "ZNF804B MUTATED" 
       TCGA-CG-4438        TCGA-CG-4440        TCGA-CG-4441        TCGA-CG-4443 
"ZNF804B WILD-TYPE"   "ZNF804B MUTATED" "ZNF804B WILD-TYPE" "ZNF804B WILD-TYPE" 
       TCGA-CG-4444        TCGA-CG-4449        TCGA-CG-4455        TCGA-CG-4460 
"ZNF804B WILD-TYPE" "ZNF804B WILD-TYPE" "ZNF804B WILD-TYPE" "ZNF804B WILD-TYPE" 
       TCGA-CG-4462        TCGA-CG-4465        TCGA-CG-4466        TCGA-CG-4469 
"ZNF804B WILD-TYPE" "ZNF804B WILD-TYPE" "ZNF804B WILD-TYPE"   "ZNF804B MUTATED" 
       TCGA-CG-4472        TCGA-CG-4474        TCGA-CG-4477        TCGA-CG-5716 
"ZNF804B WILD-TYPE" "ZNF804B WILD-TYPE" "ZNF804B WILD-TYPE" "ZNF804B WILD-TYPE" 
       TCGA-CG-5717        TCGA-CG-5718        TCGA-CG-5719        TCGA-CG-5720 
"ZNF804B WILD-TYPE" "ZNF804B WILD-TYPE" "ZNF804B WILD-TYPE" "ZNF804B WILD-TYPE" 
       TCGA-CG-5721        TCGA-CG-5722        TCGA-CG-5723        TCGA-CG-5724 
  "ZNF804B MUTATED" "ZNF804B WILD-TYPE"   "ZNF804B MUTATED"   "ZNF804B MUTATED" 
       TCGA-CG-5725        TCGA-CG-5726        TCGA-CG-5727        TCGA-CG-5728 
"ZNF804B WILD-TYPE" "ZNF804B WILD-TYPE" "ZNF804B WILD-TYPE"   "ZNF804B MUTATED" 
       TCGA-CG-5730        TCGA-CG-5732        TCGA-CG-5733        TCGA-CG-5734 
"ZNF804B WILD-TYPE" "ZNF804B WILD-TYPE" "ZNF804B WILD-TYPE" "ZNF804B WILD-TYPE" 
       TCGA-D7-5577        TCGA-D7-5578        TCGA-D7-5579        TCGA-D7-6518 
"ZNF804B WILD-TYPE" "ZNF804B WILD-TYPE" "ZNF804B WILD-TYPE" "ZNF804B WILD-TYPE" 
       TCGA-D7-6519        TCGA-D7-6520        TCGA-D7-6521        TCGA-D7-6522 
"ZNF804B WILD-TYPE" "ZNF804B WILD-TYPE" "ZNF804B WILD-TYPE" "ZNF804B WILD-TYPE" 
       TCGA-D7-6524        TCGA-D7-6525        TCGA-D7-6526        TCGA-D7-6527 
"ZNF804B WILD-TYPE" "ZNF804B WILD-TYPE" "ZNF804B WILD-TYPE"   "ZNF804B MUTATED" 
       TCGA-D7-6528        TCGA-D7-6815        TCGA-D7-6817        TCGA-D7-6818 
"ZNF804B WILD-TYPE" "ZNF804B WILD-TYPE" "ZNF804B WILD-TYPE" "ZNF804B WILD-TYPE" 
       TCGA-D7-6820        TCGA-D7-6822        TCGA-EQ-5647        TCGA-F1-6177 
"ZNF804B WILD-TYPE"   "ZNF804B MUTATED" "ZNF804B WILD-TYPE" "ZNF804B WILD-TYPE" 
       TCGA-F1-6874 
"ZNF804B WILD-TYPE" 
[1] "hr=" "1.1"
D12V2, continuous
D12V3, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  ZNF804B MUTATED      6   12
  ZNF804B WILD-TYPE   40   58
        clus
vv       ZNF804B MUTATED ZNF804B WILD-TYPE
  FEMALE               6                40
  MALE                12                58
D12V4, multiclass
D12V5, multiclass
    clus
vv   ZNF804B MUTATED ZNF804B WILD-TYPE
  T1               0                 4
  T2               7                39
  T3               6                35
  T4               2                13
D12V6, multiclass
    clus
vv   ZNF804B MUTATED ZNF804B WILD-TYPE
  N0               5                30
  N1               7                32
  N2               0                19
  N3               3                 9
D12V7, multiclass
    clus
vv   ZNF804B MUTATED ZNF804B WILD-TYPE
  M0              14                85
  M1               3                10
  MX               1                 3
D12V8, multiclass
     clus
vv    ZNF804B MUTATED ZNF804B WILD-TYPE
  I                 3                15
  II                6                26
  III               0                29
  IV                5                16

Clustering(13) Variable = EDNRB MUTATION ANALYSIS
D13V1, survival
                 sevent
clus2              0  1
  EDNRB MUTATED    6  1
  EDNRB WILD-TYPE 65 13
  EDNRB MUTATED EDNRB WILD-TYPE 
              7              78 
  EDNRB MUTATED EDNRB WILD-TYPE 
              1              13 
$`EDNRB MUTATED`
TCGA-BR-6452 TCGA-CD-5800 TCGA-CG-4455 TCGA-CG-4466 TCGA-CG-4472 TCGA-CG-5721 
        0.95         0.36        12.03        18.94        12.00         5.98 
TCGA-CG-5724 
       12.03 

$`EDNRB WILD-TYPE`
TCGA-B7-5816 TCGA-B7-5818 TCGA-BR-6455 TCGA-BR-6457 TCGA-BR-6458 TCGA-BR-6564 
        5.62         0.10         1.41         1.35         1.35         0.82 
TCGA-BR-6565 TCGA-BR-6566 TCGA-BR-6705 TCGA-BR-6706 TCGA-BR-6707 TCGA-BR-6709 
        0.62         0.62         1.71         2.17         0.99         1.22 
TCGA-BR-6710 TCGA-BR-6801 TCGA-BR-6802 TCGA-BR-6803 TCGA-BR-6852 TCGA-CD-5798 
        0.66         1.12         0.76         0.66         0.26         0.82 
TCGA-CD-5799 TCGA-CD-5801 TCGA-CD-5802 TCGA-CD-5803 TCGA-CD-5813 TCGA-CG-4300 
        0.69         0.49         0.30         0.07         0.39        20.02 
TCGA-CG-4301 TCGA-CG-4304 TCGA-CG-4305 TCGA-CG-4306 TCGA-CG-4436 TCGA-CG-4437 
        3.02        27.02        15.95         1.02        52.96         8.05 
TCGA-CG-4438 TCGA-CG-4440 TCGA-CG-4441 TCGA-CG-4443 TCGA-CG-4444 TCGA-CG-4449 
       54.05         4.01        14.01        29.98        47.05        19.07 
TCGA-CG-4460 TCGA-CG-4462 TCGA-CG-4465 TCGA-CG-4469 TCGA-CG-4474 TCGA-CG-4477 
       21.99         1.02         8.98         7.07         1.02         1.02 
TCGA-CG-5716 TCGA-CG-5717 TCGA-CG-5718 TCGA-CG-5719 TCGA-CG-5720 TCGA-CG-5722 
        1.02         6.94         1.02         1.02         0.99         0.95 
TCGA-CG-5723 TCGA-CG-5725 TCGA-CG-5726 TCGA-CG-5727 TCGA-CG-5728 TCGA-CG-5730 
       70.06        15.02        28.96        31.04        65.10         4.01 
TCGA-CG-5732 TCGA-CG-5733 TCGA-CG-5734 TCGA-D7-5577 TCGA-D7-5578 TCGA-D7-5579 
       55.04        21.07         7.99         8.65         3.58         4.54 
TCGA-D7-6518 TCGA-D7-6519 TCGA-D7-6520 TCGA-D7-6521 TCGA-D7-6522 TCGA-D7-6524 
        9.80        15.65         9.63         8.19         6.90         0.69 
TCGA-D7-6525 TCGA-D7-6526 TCGA-D7-6527 TCGA-D7-6528 TCGA-D7-6815 TCGA-D7-6817 
        5.95         6.61         4.14         1.68         3.65         4.70 
TCGA-D7-6818 TCGA-D7-6820 TCGA-D7-6822 TCGA-EQ-5647 TCGA-F1-6177 TCGA-F1-6874 
        4.04         2.93         4.27         0.62         6.54         2.01 

  EDNRB MUTATED EDNRB WILD-TYPE 
           0.36            0.07 
  EDNRB MUTATED EDNRB WILD-TYPE 
          18.94           70.06 
  EDNRB MUTATED EDNRB WILD-TYPE 
          12.00            3.83 
[1] "0.4 - 18.9 (12.0)" "0.1 - 70.1 (3.8)" 
     TCGA-B7-5816      TCGA-B7-5818      TCGA-BR-6452      TCGA-BR-6455 
"EDNRB WILD-TYPE" "EDNRB WILD-TYPE"   "EDNRB MUTATED" "EDNRB WILD-TYPE" 
     TCGA-BR-6457      TCGA-BR-6458      TCGA-BR-6564      TCGA-BR-6565 
"EDNRB WILD-TYPE" "EDNRB WILD-TYPE" "EDNRB WILD-TYPE" "EDNRB WILD-TYPE" 
     TCGA-BR-6566      TCGA-BR-6705      TCGA-BR-6706      TCGA-BR-6707 
"EDNRB WILD-TYPE" "EDNRB WILD-TYPE" "EDNRB WILD-TYPE" "EDNRB WILD-TYPE" 
     TCGA-BR-6709      TCGA-BR-6710      TCGA-BR-6801      TCGA-BR-6802 
"EDNRB WILD-TYPE" "EDNRB WILD-TYPE" "EDNRB WILD-TYPE" "EDNRB WILD-TYPE" 
     TCGA-BR-6803      TCGA-BR-6852      TCGA-CD-5798      TCGA-CD-5799 
"EDNRB WILD-TYPE" "EDNRB WILD-TYPE" "EDNRB WILD-TYPE" "EDNRB WILD-TYPE" 
     TCGA-CD-5800      TCGA-CD-5801      TCGA-CD-5802      TCGA-CD-5803 
  "EDNRB MUTATED" "EDNRB WILD-TYPE" "EDNRB WILD-TYPE" "EDNRB WILD-TYPE" 
     TCGA-CD-5813      TCGA-CG-4300      TCGA-CG-4301      TCGA-CG-4304 
"EDNRB WILD-TYPE" "EDNRB WILD-TYPE" "EDNRB WILD-TYPE" "EDNRB WILD-TYPE" 
     TCGA-CG-4305      TCGA-CG-4306      TCGA-CG-4436      TCGA-CG-4437 
"EDNRB WILD-TYPE" "EDNRB WILD-TYPE" "EDNRB WILD-TYPE" "EDNRB WILD-TYPE" 
     TCGA-CG-4438      TCGA-CG-4440      TCGA-CG-4441      TCGA-CG-4443 
"EDNRB WILD-TYPE" "EDNRB WILD-TYPE" "EDNRB WILD-TYPE" "EDNRB WILD-TYPE" 
     TCGA-CG-4444      TCGA-CG-4449      TCGA-CG-4455      TCGA-CG-4460 
"EDNRB WILD-TYPE" "EDNRB WILD-TYPE"   "EDNRB MUTATED" "EDNRB WILD-TYPE" 
     TCGA-CG-4462      TCGA-CG-4465      TCGA-CG-4466      TCGA-CG-4469 
"EDNRB WILD-TYPE" "EDNRB WILD-TYPE"   "EDNRB MUTATED" "EDNRB WILD-TYPE" 
     TCGA-CG-4472      TCGA-CG-4474      TCGA-CG-4477      TCGA-CG-5716 
  "EDNRB MUTATED" "EDNRB WILD-TYPE" "EDNRB WILD-TYPE" "EDNRB WILD-TYPE" 
     TCGA-CG-5717      TCGA-CG-5718      TCGA-CG-5719      TCGA-CG-5720 
"EDNRB WILD-TYPE" "EDNRB WILD-TYPE" "EDNRB WILD-TYPE" "EDNRB WILD-TYPE" 
     TCGA-CG-5721      TCGA-CG-5722      TCGA-CG-5723      TCGA-CG-5724 
  "EDNRB MUTATED" "EDNRB WILD-TYPE" "EDNRB WILD-TYPE"   "EDNRB MUTATED" 
     TCGA-CG-5725      TCGA-CG-5726      TCGA-CG-5727      TCGA-CG-5728 
"EDNRB WILD-TYPE" "EDNRB WILD-TYPE" "EDNRB WILD-TYPE" "EDNRB WILD-TYPE" 
     TCGA-CG-5730      TCGA-CG-5732      TCGA-CG-5733      TCGA-CG-5734 
"EDNRB WILD-TYPE" "EDNRB WILD-TYPE" "EDNRB WILD-TYPE" "EDNRB WILD-TYPE" 
     TCGA-D7-5577      TCGA-D7-5578      TCGA-D7-5579      TCGA-D7-6518 
"EDNRB WILD-TYPE" "EDNRB WILD-TYPE" "EDNRB WILD-TYPE" "EDNRB WILD-TYPE" 
     TCGA-D7-6519      TCGA-D7-6520      TCGA-D7-6521      TCGA-D7-6522 
"EDNRB WILD-TYPE" "EDNRB WILD-TYPE" "EDNRB WILD-TYPE" "EDNRB WILD-TYPE" 
     TCGA-D7-6524      TCGA-D7-6525      TCGA-D7-6526      TCGA-D7-6527 
"EDNRB WILD-TYPE" "EDNRB WILD-TYPE" "EDNRB WILD-TYPE" "EDNRB WILD-TYPE" 
     TCGA-D7-6528      TCGA-D7-6815      TCGA-D7-6817      TCGA-D7-6818 
"EDNRB WILD-TYPE" "EDNRB WILD-TYPE" "EDNRB WILD-TYPE" "EDNRB WILD-TYPE" 
     TCGA-D7-6820      TCGA-D7-6822      TCGA-EQ-5647      TCGA-F1-6177 
"EDNRB WILD-TYPE" "EDNRB WILD-TYPE" "EDNRB WILD-TYPE" "EDNRB WILD-TYPE" 
     TCGA-F1-6874 
"EDNRB WILD-TYPE" 
     TCGA-B7-5816      TCGA-B7-5818      TCGA-BR-6452      TCGA-BR-6455 
"EDNRB WILD-TYPE" "EDNRB WILD-TYPE"   "EDNRB MUTATED" "EDNRB WILD-TYPE" 
     TCGA-BR-6457      TCGA-BR-6458      TCGA-BR-6564      TCGA-BR-6565 
"EDNRB WILD-TYPE" "EDNRB WILD-TYPE" "EDNRB WILD-TYPE" "EDNRB WILD-TYPE" 
     TCGA-BR-6566      TCGA-BR-6705      TCGA-BR-6706      TCGA-BR-6707 
"EDNRB WILD-TYPE" "EDNRB WILD-TYPE" "EDNRB WILD-TYPE" "EDNRB WILD-TYPE" 
     TCGA-BR-6709      TCGA-BR-6710      TCGA-BR-6801      TCGA-BR-6802 
"EDNRB WILD-TYPE" "EDNRB WILD-TYPE" "EDNRB WILD-TYPE" "EDNRB WILD-TYPE" 
     TCGA-BR-6803      TCGA-BR-6852      TCGA-CD-5798      TCGA-CD-5799 
"EDNRB WILD-TYPE" "EDNRB WILD-TYPE" "EDNRB WILD-TYPE" "EDNRB WILD-TYPE" 
     TCGA-CD-5800      TCGA-CD-5801      TCGA-CD-5802      TCGA-CD-5803 
  "EDNRB MUTATED" "EDNRB WILD-TYPE" "EDNRB WILD-TYPE" "EDNRB WILD-TYPE" 
     TCGA-CD-5813      TCGA-CG-4300      TCGA-CG-4301      TCGA-CG-4304 
"EDNRB WILD-TYPE" "EDNRB WILD-TYPE" "EDNRB WILD-TYPE" "EDNRB WILD-TYPE" 
     TCGA-CG-4305      TCGA-CG-4306      TCGA-CG-4436      TCGA-CG-4437 
"EDNRB WILD-TYPE" "EDNRB WILD-TYPE" "EDNRB WILD-TYPE" "EDNRB WILD-TYPE" 
     TCGA-CG-4438      TCGA-CG-4440      TCGA-CG-4441      TCGA-CG-4443 
"EDNRB WILD-TYPE" "EDNRB WILD-TYPE" "EDNRB WILD-TYPE" "EDNRB WILD-TYPE" 
     TCGA-CG-4444      TCGA-CG-4449      TCGA-CG-4455      TCGA-CG-4460 
"EDNRB WILD-TYPE" "EDNRB WILD-TYPE"   "EDNRB MUTATED" "EDNRB WILD-TYPE" 
     TCGA-CG-4462      TCGA-CG-4465      TCGA-CG-4466      TCGA-CG-4469 
"EDNRB WILD-TYPE" "EDNRB WILD-TYPE"   "EDNRB MUTATED" "EDNRB WILD-TYPE" 
     TCGA-CG-4472      TCGA-CG-4474      TCGA-CG-4477      TCGA-CG-5716 
  "EDNRB MUTATED" "EDNRB WILD-TYPE" "EDNRB WILD-TYPE" "EDNRB WILD-TYPE" 
     TCGA-CG-5717      TCGA-CG-5718      TCGA-CG-5719      TCGA-CG-5720 
"EDNRB WILD-TYPE" "EDNRB WILD-TYPE" "EDNRB WILD-TYPE" "EDNRB WILD-TYPE" 
     TCGA-CG-5721      TCGA-CG-5722      TCGA-CG-5723      TCGA-CG-5724 
  "EDNRB MUTATED" "EDNRB WILD-TYPE" "EDNRB WILD-TYPE"   "EDNRB MUTATED" 
     TCGA-CG-5725      TCGA-CG-5726      TCGA-CG-5727      TCGA-CG-5728 
"EDNRB WILD-TYPE" "EDNRB WILD-TYPE" "EDNRB WILD-TYPE" "EDNRB WILD-TYPE" 
     TCGA-CG-5730      TCGA-CG-5732      TCGA-CG-5733      TCGA-CG-5734 
"EDNRB WILD-TYPE" "EDNRB WILD-TYPE" "EDNRB WILD-TYPE" "EDNRB WILD-TYPE" 
     TCGA-D7-5577      TCGA-D7-5578      TCGA-D7-5579      TCGA-D7-6518 
"EDNRB WILD-TYPE" "EDNRB WILD-TYPE" "EDNRB WILD-TYPE" "EDNRB WILD-TYPE" 
     TCGA-D7-6519      TCGA-D7-6520      TCGA-D7-6521      TCGA-D7-6522 
"EDNRB WILD-TYPE" "EDNRB WILD-TYPE" "EDNRB WILD-TYPE" "EDNRB WILD-TYPE" 
     TCGA-D7-6524      TCGA-D7-6525      TCGA-D7-6526      TCGA-D7-6527 
"EDNRB WILD-TYPE" "EDNRB WILD-TYPE" "EDNRB WILD-TYPE" "EDNRB WILD-TYPE" 
     TCGA-D7-6528      TCGA-D7-6815      TCGA-D7-6817      TCGA-D7-6818 
"EDNRB WILD-TYPE" "EDNRB WILD-TYPE" "EDNRB WILD-TYPE" "EDNRB WILD-TYPE" 
     TCGA-D7-6820      TCGA-D7-6822      TCGA-EQ-5647      TCGA-F1-6177 
"EDNRB WILD-TYPE" "EDNRB WILD-TYPE" "EDNRB WILD-TYPE" "EDNRB WILD-TYPE" 
     TCGA-F1-6874 
"EDNRB WILD-TYPE" 
     TCGA-B7-5816      TCGA-B7-5818      TCGA-BR-6452      TCGA-BR-6455 
"EDNRB WILD-TYPE" "EDNRB WILD-TYPE"   "EDNRB MUTATED" "EDNRB WILD-TYPE" 
     TCGA-BR-6457      TCGA-BR-6458      TCGA-BR-6564      TCGA-BR-6565 
"EDNRB WILD-TYPE" "EDNRB WILD-TYPE" "EDNRB WILD-TYPE" "EDNRB WILD-TYPE" 
     TCGA-BR-6566      TCGA-BR-6705      TCGA-BR-6706      TCGA-BR-6707 
"EDNRB WILD-TYPE" "EDNRB WILD-TYPE" "EDNRB WILD-TYPE" "EDNRB WILD-TYPE" 
     TCGA-BR-6709      TCGA-BR-6710      TCGA-BR-6801      TCGA-BR-6802 
"EDNRB WILD-TYPE" "EDNRB WILD-TYPE" "EDNRB WILD-TYPE" "EDNRB WILD-TYPE" 
     TCGA-BR-6803      TCGA-BR-6852      TCGA-CD-5798      TCGA-CD-5799 
"EDNRB WILD-TYPE" "EDNRB WILD-TYPE" "EDNRB WILD-TYPE" "EDNRB WILD-TYPE" 
     TCGA-CD-5800      TCGA-CD-5801      TCGA-CD-5802      TCGA-CD-5803 
  "EDNRB MUTATED" "EDNRB WILD-TYPE" "EDNRB WILD-TYPE" "EDNRB WILD-TYPE" 
     TCGA-CD-5813      TCGA-CG-4300      TCGA-CG-4301      TCGA-CG-4304 
"EDNRB WILD-TYPE" "EDNRB WILD-TYPE" "EDNRB WILD-TYPE" "EDNRB WILD-TYPE" 
     TCGA-CG-4305      TCGA-CG-4306      TCGA-CG-4436      TCGA-CG-4437 
"EDNRB WILD-TYPE" "EDNRB WILD-TYPE" "EDNRB WILD-TYPE" "EDNRB WILD-TYPE" 
     TCGA-CG-4438      TCGA-CG-4440      TCGA-CG-4441      TCGA-CG-4443 
"EDNRB WILD-TYPE" "EDNRB WILD-TYPE" "EDNRB WILD-TYPE" "EDNRB WILD-TYPE" 
     TCGA-CG-4444      TCGA-CG-4449      TCGA-CG-4455      TCGA-CG-4460 
"EDNRB WILD-TYPE" "EDNRB WILD-TYPE"   "EDNRB MUTATED" "EDNRB WILD-TYPE" 
     TCGA-CG-4462      TCGA-CG-4465      TCGA-CG-4466      TCGA-CG-4469 
"EDNRB WILD-TYPE" "EDNRB WILD-TYPE"   "EDNRB MUTATED" "EDNRB WILD-TYPE" 
     TCGA-CG-4472      TCGA-CG-4474      TCGA-CG-4477      TCGA-CG-5716 
  "EDNRB MUTATED" "EDNRB WILD-TYPE" "EDNRB WILD-TYPE" "EDNRB WILD-TYPE" 
     TCGA-CG-5717      TCGA-CG-5718      TCGA-CG-5719      TCGA-CG-5720 
"EDNRB WILD-TYPE" "EDNRB WILD-TYPE" "EDNRB WILD-TYPE" "EDNRB WILD-TYPE" 
     TCGA-CG-5721      TCGA-CG-5722      TCGA-CG-5723      TCGA-CG-5724 
  "EDNRB MUTATED" "EDNRB WILD-TYPE" "EDNRB WILD-TYPE"   "EDNRB MUTATED" 
     TCGA-CG-5725      TCGA-CG-5726      TCGA-CG-5727      TCGA-CG-5728 
"EDNRB WILD-TYPE" "EDNRB WILD-TYPE" "EDNRB WILD-TYPE" "EDNRB WILD-TYPE" 
     TCGA-CG-5730      TCGA-CG-5732      TCGA-CG-5733      TCGA-CG-5734 
"EDNRB WILD-TYPE" "EDNRB WILD-TYPE" "EDNRB WILD-TYPE" "EDNRB WILD-TYPE" 
     TCGA-D7-5577      TCGA-D7-5578      TCGA-D7-5579      TCGA-D7-6518 
"EDNRB WILD-TYPE" "EDNRB WILD-TYPE" "EDNRB WILD-TYPE" "EDNRB WILD-TYPE" 
     TCGA-D7-6519      TCGA-D7-6520      TCGA-D7-6521      TCGA-D7-6522 
"EDNRB WILD-TYPE" "EDNRB WILD-TYPE" "EDNRB WILD-TYPE" "EDNRB WILD-TYPE" 
     TCGA-D7-6524      TCGA-D7-6525      TCGA-D7-6526      TCGA-D7-6527 
"EDNRB WILD-TYPE" "EDNRB WILD-TYPE" "EDNRB WILD-TYPE" "EDNRB WILD-TYPE" 
     TCGA-D7-6528      TCGA-D7-6815      TCGA-D7-6817      TCGA-D7-6818 
"EDNRB WILD-TYPE" "EDNRB WILD-TYPE" "EDNRB WILD-TYPE" "EDNRB WILD-TYPE" 
     TCGA-D7-6820      TCGA-D7-6822      TCGA-EQ-5647      TCGA-F1-6177 
"EDNRB WILD-TYPE" "EDNRB WILD-TYPE" "EDNRB WILD-TYPE" "EDNRB WILD-TYPE" 
     TCGA-F1-6874 
"EDNRB WILD-TYPE" 
[1] "hr=" "1.2"
D13V2, continuous
D13V3, binary
[1] "tbl2"
                 cls
clus              [,1] [,2]
  EDNRB MUTATED      6    6
  EDNRB WILD-TYPE   40   64
        clus
vv       EDNRB MUTATED EDNRB WILD-TYPE
  FEMALE             6              40
  MALE               6              64
D13V4, multiclass
D13V5, multiclass
    clus
vv   EDNRB MUTATED EDNRB WILD-TYPE
  T1             1               3
  T2             3              43
  T3             4              37
  T4             3              12
D13V6, multiclass
    clus
vv   EDNRB MUTATED EDNRB WILD-TYPE
  N0             4              31
  N1             6              33
  N2             0              19
  N3             1              11
D13V7, multiclass
    clus
vv   EDNRB MUTATED EDNRB WILD-TYPE
  M0            10              89
  M1             1              12
  MX             1               3
D13V8, multiclass
     clus
vv    EDNRB MUTATED EDNRB WILD-TYPE
  I               1              17
  II              3              29
  III             3              26
  IV              3              18

Clustering(14) Variable = SPRYD5 MUTATION ANALYSIS
D14V1, survival
                  sevent
clus2               0  1
  SPRYD5 MUTATED    2  3
  SPRYD5 WILD-TYPE 69 11
  SPRYD5 MUTATED SPRYD5 WILD-TYPE 
               5               80 
  SPRYD5 MUTATED SPRYD5 WILD-TYPE 
               3               11 
$`SPRYD5 MUTATED`
TCGA-CG-4306 TCGA-CG-4466 TCGA-CG-5724 TCGA-CG-5726 TCGA-F1-6177 
        1.02        18.94        12.03        28.96         6.54 

$`SPRYD5 WILD-TYPE`
TCGA-B7-5816 TCGA-B7-5818 TCGA-BR-6452 TCGA-BR-6455 TCGA-BR-6457 TCGA-BR-6458 
        5.62         0.10         0.95         1.41         1.35         1.35 
TCGA-BR-6564 TCGA-BR-6565 TCGA-BR-6566 TCGA-BR-6705 TCGA-BR-6706 TCGA-BR-6707 
        0.82         0.62         0.62         1.71         2.17         0.99 
TCGA-BR-6709 TCGA-BR-6710 TCGA-BR-6801 TCGA-BR-6802 TCGA-BR-6803 TCGA-BR-6852 
        1.22         0.66         1.12         0.76         0.66         0.26 
TCGA-CD-5798 TCGA-CD-5799 TCGA-CD-5800 TCGA-CD-5801 TCGA-CD-5802 TCGA-CD-5803 
        0.82         0.69         0.36         0.49         0.30         0.07 
TCGA-CD-5813 TCGA-CG-4300 TCGA-CG-4301 TCGA-CG-4304 TCGA-CG-4305 TCGA-CG-4436 
        0.39        20.02         3.02        27.02        15.95        52.96 
TCGA-CG-4437 TCGA-CG-4438 TCGA-CG-4440 TCGA-CG-4441 TCGA-CG-4443 TCGA-CG-4444 
        8.05        54.05         4.01        14.01        29.98        47.05 
TCGA-CG-4449 TCGA-CG-4455 TCGA-CG-4460 TCGA-CG-4462 TCGA-CG-4465 TCGA-CG-4469 
       19.07        12.03        21.99         1.02         8.98         7.07 
TCGA-CG-4472 TCGA-CG-4474 TCGA-CG-4477 TCGA-CG-5716 TCGA-CG-5717 TCGA-CG-5718 
       12.00         1.02         1.02         1.02         6.94         1.02 
TCGA-CG-5719 TCGA-CG-5720 TCGA-CG-5721 TCGA-CG-5722 TCGA-CG-5723 TCGA-CG-5725 
        1.02         0.99         5.98         0.95        70.06        15.02 
TCGA-CG-5727 TCGA-CG-5728 TCGA-CG-5730 TCGA-CG-5732 TCGA-CG-5733 TCGA-CG-5734 
       31.04        65.10         4.01        55.04        21.07         7.99 
TCGA-D7-5577 TCGA-D7-5578 TCGA-D7-5579 TCGA-D7-6518 TCGA-D7-6519 TCGA-D7-6520 
        8.65         3.58         4.54         9.80        15.65         9.63 
TCGA-D7-6521 TCGA-D7-6522 TCGA-D7-6524 TCGA-D7-6525 TCGA-D7-6526 TCGA-D7-6527 
        8.19         6.90         0.69         5.95         6.61         4.14 
TCGA-D7-6528 TCGA-D7-6815 TCGA-D7-6817 TCGA-D7-6818 TCGA-D7-6820 TCGA-D7-6822 
        1.68         3.65         4.70         4.04         2.93         4.27 
TCGA-EQ-5647 TCGA-F1-6874 
        0.62         2.01 

  SPRYD5 MUTATED SPRYD5 WILD-TYPE 
            1.02             0.07 
  SPRYD5 MUTATED SPRYD5 WILD-TYPE 
           28.96            70.06 
  SPRYD5 MUTATED SPRYD5 WILD-TYPE 
           12.03             3.83 
[1] "1.0 - 29.0 (12.0)" "0.1 - 70.1 (3.8)" 
      TCGA-B7-5816       TCGA-B7-5818       TCGA-BR-6452       TCGA-BR-6455 
"SPRYD5 WILD-TYPE" "SPRYD5 WILD-TYPE" "SPRYD5 WILD-TYPE" "SPRYD5 WILD-TYPE" 
      TCGA-BR-6457       TCGA-BR-6458       TCGA-BR-6564       TCGA-BR-6565 
"SPRYD5 WILD-TYPE" "SPRYD5 WILD-TYPE" "SPRYD5 WILD-TYPE" "SPRYD5 WILD-TYPE" 
      TCGA-BR-6566       TCGA-BR-6705       TCGA-BR-6706       TCGA-BR-6707 
"SPRYD5 WILD-TYPE" "SPRYD5 WILD-TYPE" "SPRYD5 WILD-TYPE" "SPRYD5 WILD-TYPE" 
      TCGA-BR-6709       TCGA-BR-6710       TCGA-BR-6801       TCGA-BR-6802 
"SPRYD5 WILD-TYPE" "SPRYD5 WILD-TYPE" "SPRYD5 WILD-TYPE" "SPRYD5 WILD-TYPE" 
      TCGA-BR-6803       TCGA-BR-6852       TCGA-CD-5798       TCGA-CD-5799 
"SPRYD5 WILD-TYPE" "SPRYD5 WILD-TYPE" "SPRYD5 WILD-TYPE" "SPRYD5 WILD-TYPE" 
      TCGA-CD-5800       TCGA-CD-5801       TCGA-CD-5802       TCGA-CD-5803 
"SPRYD5 WILD-TYPE" "SPRYD5 WILD-TYPE" "SPRYD5 WILD-TYPE" "SPRYD5 WILD-TYPE" 
      TCGA-CD-5813       TCGA-CG-4300       TCGA-CG-4301       TCGA-CG-4304 
"SPRYD5 WILD-TYPE" "SPRYD5 WILD-TYPE" "SPRYD5 WILD-TYPE" "SPRYD5 WILD-TYPE" 
      TCGA-CG-4305       TCGA-CG-4306       TCGA-CG-4436       TCGA-CG-4437 
"SPRYD5 WILD-TYPE"   "SPRYD5 MUTATED" "SPRYD5 WILD-TYPE" "SPRYD5 WILD-TYPE" 
      TCGA-CG-4438       TCGA-CG-4440       TCGA-CG-4441       TCGA-CG-4443 
"SPRYD5 WILD-TYPE" "SPRYD5 WILD-TYPE" "SPRYD5 WILD-TYPE" "SPRYD5 WILD-TYPE" 
      TCGA-CG-4444       TCGA-CG-4449       TCGA-CG-4455       TCGA-CG-4460 
"SPRYD5 WILD-TYPE" "SPRYD5 WILD-TYPE" "SPRYD5 WILD-TYPE" "SPRYD5 WILD-TYPE" 
      TCGA-CG-4462       TCGA-CG-4465       TCGA-CG-4466       TCGA-CG-4469 
"SPRYD5 WILD-TYPE" "SPRYD5 WILD-TYPE"   "SPRYD5 MUTATED" "SPRYD5 WILD-TYPE" 
      TCGA-CG-4472       TCGA-CG-4474       TCGA-CG-4477       TCGA-CG-5716 
"SPRYD5 WILD-TYPE" "SPRYD5 WILD-TYPE" "SPRYD5 WILD-TYPE" "SPRYD5 WILD-TYPE" 
      TCGA-CG-5717       TCGA-CG-5718       TCGA-CG-5719       TCGA-CG-5720 
"SPRYD5 WILD-TYPE" "SPRYD5 WILD-TYPE" "SPRYD5 WILD-TYPE" "SPRYD5 WILD-TYPE" 
      TCGA-CG-5721       TCGA-CG-5722       TCGA-CG-5723       TCGA-CG-5724 
"SPRYD5 WILD-TYPE" "SPRYD5 WILD-TYPE" "SPRYD5 WILD-TYPE"   "SPRYD5 MUTATED" 
      TCGA-CG-5725       TCGA-CG-5726       TCGA-CG-5727       TCGA-CG-5728 
"SPRYD5 WILD-TYPE"   "SPRYD5 MUTATED" "SPRYD5 WILD-TYPE" "SPRYD5 WILD-TYPE" 
      TCGA-CG-5730       TCGA-CG-5732       TCGA-CG-5733       TCGA-CG-5734 
"SPRYD5 WILD-TYPE" "SPRYD5 WILD-TYPE" "SPRYD5 WILD-TYPE" "SPRYD5 WILD-TYPE" 
      TCGA-D7-5577       TCGA-D7-5578       TCGA-D7-5579       TCGA-D7-6518 
"SPRYD5 WILD-TYPE" "SPRYD5 WILD-TYPE" "SPRYD5 WILD-TYPE" "SPRYD5 WILD-TYPE" 
      TCGA-D7-6519       TCGA-D7-6520       TCGA-D7-6521       TCGA-D7-6522 
"SPRYD5 WILD-TYPE" "SPRYD5 WILD-TYPE" "SPRYD5 WILD-TYPE" "SPRYD5 WILD-TYPE" 
      TCGA-D7-6524       TCGA-D7-6525       TCGA-D7-6526       TCGA-D7-6527 
"SPRYD5 WILD-TYPE" "SPRYD5 WILD-TYPE" "SPRYD5 WILD-TYPE" "SPRYD5 WILD-TYPE" 
      TCGA-D7-6528       TCGA-D7-6815       TCGA-D7-6817       TCGA-D7-6818 
"SPRYD5 WILD-TYPE" "SPRYD5 WILD-TYPE" "SPRYD5 WILD-TYPE" "SPRYD5 WILD-TYPE" 
      TCGA-D7-6820       TCGA-D7-6822       TCGA-EQ-5647       TCGA-F1-6177 
"SPRYD5 WILD-TYPE" "SPRYD5 WILD-TYPE" "SPRYD5 WILD-TYPE"   "SPRYD5 MUTATED" 
      TCGA-F1-6874 
"SPRYD5 WILD-TYPE" 
      TCGA-B7-5816       TCGA-B7-5818       TCGA-BR-6452       TCGA-BR-6455 
"SPRYD5 WILD-TYPE" "SPRYD5 WILD-TYPE" "SPRYD5 WILD-TYPE" "SPRYD5 WILD-TYPE" 
      TCGA-BR-6457       TCGA-BR-6458       TCGA-BR-6564       TCGA-BR-6565 
"SPRYD5 WILD-TYPE" "SPRYD5 WILD-TYPE" "SPRYD5 WILD-TYPE" "SPRYD5 WILD-TYPE" 
      TCGA-BR-6566       TCGA-BR-6705       TCGA-BR-6706       TCGA-BR-6707 
"SPRYD5 WILD-TYPE" "SPRYD5 WILD-TYPE" "SPRYD5 WILD-TYPE" "SPRYD5 WILD-TYPE" 
      TCGA-BR-6709       TCGA-BR-6710       TCGA-BR-6801       TCGA-BR-6802 
"SPRYD5 WILD-TYPE" "SPRYD5 WILD-TYPE" "SPRYD5 WILD-TYPE" "SPRYD5 WILD-TYPE" 
      TCGA-BR-6803       TCGA-BR-6852       TCGA-CD-5798       TCGA-CD-5799 
"SPRYD5 WILD-TYPE" "SPRYD5 WILD-TYPE" "SPRYD5 WILD-TYPE" "SPRYD5 WILD-TYPE" 
      TCGA-CD-5800       TCGA-CD-5801       TCGA-CD-5802       TCGA-CD-5803 
"SPRYD5 WILD-TYPE" "SPRYD5 WILD-TYPE" "SPRYD5 WILD-TYPE" "SPRYD5 WILD-TYPE" 
      TCGA-CD-5813       TCGA-CG-4300       TCGA-CG-4301       TCGA-CG-4304 
"SPRYD5 WILD-TYPE" "SPRYD5 WILD-TYPE" "SPRYD5 WILD-TYPE" "SPRYD5 WILD-TYPE" 
      TCGA-CG-4305       TCGA-CG-4306       TCGA-CG-4436       TCGA-CG-4437 
"SPRYD5 WILD-TYPE"   "SPRYD5 MUTATED" "SPRYD5 WILD-TYPE" "SPRYD5 WILD-TYPE" 
      TCGA-CG-4438       TCGA-CG-4440       TCGA-CG-4441       TCGA-CG-4443 
"SPRYD5 WILD-TYPE" "SPRYD5 WILD-TYPE" "SPRYD5 WILD-TYPE" "SPRYD5 WILD-TYPE" 
      TCGA-CG-4444       TCGA-CG-4449       TCGA-CG-4455       TCGA-CG-4460 
"SPRYD5 WILD-TYPE" "SPRYD5 WILD-TYPE" "SPRYD5 WILD-TYPE" "SPRYD5 WILD-TYPE" 
      TCGA-CG-4462       TCGA-CG-4465       TCGA-CG-4466       TCGA-CG-4469 
"SPRYD5 WILD-TYPE" "SPRYD5 WILD-TYPE"   "SPRYD5 MUTATED" "SPRYD5 WILD-TYPE" 
      TCGA-CG-4472       TCGA-CG-4474       TCGA-CG-4477       TCGA-CG-5716 
"SPRYD5 WILD-TYPE" "SPRYD5 WILD-TYPE" "SPRYD5 WILD-TYPE" "SPRYD5 WILD-TYPE" 
      TCGA-CG-5717       TCGA-CG-5718       TCGA-CG-5719       TCGA-CG-5720 
"SPRYD5 WILD-TYPE" "SPRYD5 WILD-TYPE" "SPRYD5 WILD-TYPE" "SPRYD5 WILD-TYPE" 
      TCGA-CG-5721       TCGA-CG-5722       TCGA-CG-5723       TCGA-CG-5724 
"SPRYD5 WILD-TYPE" "SPRYD5 WILD-TYPE" "SPRYD5 WILD-TYPE"   "SPRYD5 MUTATED" 
      TCGA-CG-5725       TCGA-CG-5726       TCGA-CG-5727       TCGA-CG-5728 
"SPRYD5 WILD-TYPE"   "SPRYD5 MUTATED" "SPRYD5 WILD-TYPE" "SPRYD5 WILD-TYPE" 
      TCGA-CG-5730       TCGA-CG-5732       TCGA-CG-5733       TCGA-CG-5734 
"SPRYD5 WILD-TYPE" "SPRYD5 WILD-TYPE" "SPRYD5 WILD-TYPE" "SPRYD5 WILD-TYPE" 
      TCGA-D7-5577       TCGA-D7-5578       TCGA-D7-5579       TCGA-D7-6518 
"SPRYD5 WILD-TYPE" "SPRYD5 WILD-TYPE" "SPRYD5 WILD-TYPE" "SPRYD5 WILD-TYPE" 
      TCGA-D7-6519       TCGA-D7-6520       TCGA-D7-6521       TCGA-D7-6522 
"SPRYD5 WILD-TYPE" "SPRYD5 WILD-TYPE" "SPRYD5 WILD-TYPE" "SPRYD5 WILD-TYPE" 
      TCGA-D7-6524       TCGA-D7-6525       TCGA-D7-6526       TCGA-D7-6527 
"SPRYD5 WILD-TYPE" "SPRYD5 WILD-TYPE" "SPRYD5 WILD-TYPE" "SPRYD5 WILD-TYPE" 
      TCGA-D7-6528       TCGA-D7-6815       TCGA-D7-6817       TCGA-D7-6818 
"SPRYD5 WILD-TYPE" "SPRYD5 WILD-TYPE" "SPRYD5 WILD-TYPE" "SPRYD5 WILD-TYPE" 
      TCGA-D7-6820       TCGA-D7-6822       TCGA-EQ-5647       TCGA-F1-6177 
"SPRYD5 WILD-TYPE" "SPRYD5 WILD-TYPE" "SPRYD5 WILD-TYPE"   "SPRYD5 MUTATED" 
      TCGA-F1-6874 
"SPRYD5 WILD-TYPE" 
      TCGA-B7-5816       TCGA-B7-5818       TCGA-BR-6452       TCGA-BR-6455 
"SPRYD5 WILD-TYPE" "SPRYD5 WILD-TYPE" "SPRYD5 WILD-TYPE" "SPRYD5 WILD-TYPE" 
      TCGA-BR-6457       TCGA-BR-6458       TCGA-BR-6564       TCGA-BR-6565 
"SPRYD5 WILD-TYPE" "SPRYD5 WILD-TYPE" "SPRYD5 WILD-TYPE" "SPRYD5 WILD-TYPE" 
      TCGA-BR-6566       TCGA-BR-6705       TCGA-BR-6706       TCGA-BR-6707 
"SPRYD5 WILD-TYPE" "SPRYD5 WILD-TYPE" "SPRYD5 WILD-TYPE" "SPRYD5 WILD-TYPE" 
      TCGA-BR-6709       TCGA-BR-6710       TCGA-BR-6801       TCGA-BR-6802 
"SPRYD5 WILD-TYPE" "SPRYD5 WILD-TYPE" "SPRYD5 WILD-TYPE" "SPRYD5 WILD-TYPE" 
      TCGA-BR-6803       TCGA-BR-6852       TCGA-CD-5798       TCGA-CD-5799 
"SPRYD5 WILD-TYPE" "SPRYD5 WILD-TYPE" "SPRYD5 WILD-TYPE" "SPRYD5 WILD-TYPE" 
      TCGA-CD-5800       TCGA-CD-5801       TCGA-CD-5802       TCGA-CD-5803 
"SPRYD5 WILD-TYPE" "SPRYD5 WILD-TYPE" "SPRYD5 WILD-TYPE" "SPRYD5 WILD-TYPE" 
      TCGA-CD-5813       TCGA-CG-4300       TCGA-CG-4301       TCGA-CG-4304 
"SPRYD5 WILD-TYPE" "SPRYD5 WILD-TYPE" "SPRYD5 WILD-TYPE" "SPRYD5 WILD-TYPE" 
      TCGA-CG-4305       TCGA-CG-4306       TCGA-CG-4436       TCGA-CG-4437 
"SPRYD5 WILD-TYPE"   "SPRYD5 MUTATED" "SPRYD5 WILD-TYPE" "SPRYD5 WILD-TYPE" 
      TCGA-CG-4438       TCGA-CG-4440       TCGA-CG-4441       TCGA-CG-4443 
"SPRYD5 WILD-TYPE" "SPRYD5 WILD-TYPE" "SPRYD5 WILD-TYPE" "SPRYD5 WILD-TYPE" 
      TCGA-CG-4444       TCGA-CG-4449       TCGA-CG-4455       TCGA-CG-4460 
"SPRYD5 WILD-TYPE" "SPRYD5 WILD-TYPE" "SPRYD5 WILD-TYPE" "SPRYD5 WILD-TYPE" 
      TCGA-CG-4462       TCGA-CG-4465       TCGA-CG-4466       TCGA-CG-4469 
"SPRYD5 WILD-TYPE" "SPRYD5 WILD-TYPE"   "SPRYD5 MUTATED" "SPRYD5 WILD-TYPE" 
      TCGA-CG-4472       TCGA-CG-4474       TCGA-CG-4477       TCGA-CG-5716 
"SPRYD5 WILD-TYPE" "SPRYD5 WILD-TYPE" "SPRYD5 WILD-TYPE" "SPRYD5 WILD-TYPE" 
      TCGA-CG-5717       TCGA-CG-5718       TCGA-CG-5719       TCGA-CG-5720 
"SPRYD5 WILD-TYPE" "SPRYD5 WILD-TYPE" "SPRYD5 WILD-TYPE" "SPRYD5 WILD-TYPE" 
      TCGA-CG-5721       TCGA-CG-5722       TCGA-CG-5723       TCGA-CG-5724 
"SPRYD5 WILD-TYPE" "SPRYD5 WILD-TYPE" "SPRYD5 WILD-TYPE"   "SPRYD5 MUTATED" 
      TCGA-CG-5725       TCGA-CG-5726       TCGA-CG-5727       TCGA-CG-5728 
"SPRYD5 WILD-TYPE"   "SPRYD5 MUTATED" "SPRYD5 WILD-TYPE" "SPRYD5 WILD-TYPE" 
      TCGA-CG-5730       TCGA-CG-5732       TCGA-CG-5733       TCGA-CG-5734 
"SPRYD5 WILD-TYPE" "SPRYD5 WILD-TYPE" "SPRYD5 WILD-TYPE" "SPRYD5 WILD-TYPE" 
      TCGA-D7-5577       TCGA-D7-5578       TCGA-D7-5579       TCGA-D7-6518 
"SPRYD5 WILD-TYPE" "SPRYD5 WILD-TYPE" "SPRYD5 WILD-TYPE" "SPRYD5 WILD-TYPE" 
      TCGA-D7-6519       TCGA-D7-6520       TCGA-D7-6521       TCGA-D7-6522 
"SPRYD5 WILD-TYPE" "SPRYD5 WILD-TYPE" "SPRYD5 WILD-TYPE" "SPRYD5 WILD-TYPE" 
      TCGA-D7-6524       TCGA-D7-6525       TCGA-D7-6526       TCGA-D7-6527 
"SPRYD5 WILD-TYPE" "SPRYD5 WILD-TYPE" "SPRYD5 WILD-TYPE" "SPRYD5 WILD-TYPE" 
      TCGA-D7-6528       TCGA-D7-6815       TCGA-D7-6817       TCGA-D7-6818 
"SPRYD5 WILD-TYPE" "SPRYD5 WILD-TYPE" "SPRYD5 WILD-TYPE" "SPRYD5 WILD-TYPE" 
      TCGA-D7-6820       TCGA-D7-6822       TCGA-EQ-5647       TCGA-F1-6177 
"SPRYD5 WILD-TYPE" "SPRYD5 WILD-TYPE" "SPRYD5 WILD-TYPE"   "SPRYD5 MUTATED" 
      TCGA-F1-6874 
"SPRYD5 WILD-TYPE" 
[1] "hr=" "2.5"
D14V2, continuous
D14V3, binary
[1] "tbl2"
                  cls
clus               [,1] [,2]
  SPRYD5 MUTATED      3    5
  SPRYD5 WILD-TYPE   43   65
        clus
vv       SPRYD5 MUTATED SPRYD5 WILD-TYPE
  FEMALE              3               43
  MALE                5               65
D14V4, multiclass
D14V5, multiclass
    clus
vv   SPRYD5 MUTATED SPRYD5 WILD-TYPE
  T1              2                2
  T2              2               44
  T3              2               39
  T4              1               14
D14V6, multiclass
    clus
vv   SPRYD5 MUTATED SPRYD5 WILD-TYPE
  N0              2               33
  N1              2               37
  N2              2               17
  N3              1               11
D14V7, multiclass
    clus
vv   SPRYD5 MUTATED SPRYD5 WILD-TYPE
  M0              5               94
  M1              2               11
  MX              1                3
D14V8, multiclass
     clus
vv    SPRYD5 MUTATED SPRYD5 WILD-TYPE
  I                3               15
  II               1               31
  III              0               29
  IV               3               18

Clustering(15) Variable = PCDH15 MUTATION ANALYSIS
D15V1, survival
                  sevent
clus2               0  1
  PCDH15 MUTATED   13  3
  PCDH15 WILD-TYPE 58 11
  PCDH15 MUTATED PCDH15 WILD-TYPE 
              16               69 
  PCDH15 MUTATED PCDH15 WILD-TYPE 
               3               11 
$`PCDH15 MUTATED`
TCGA-B7-5818 TCGA-BR-6706 TCGA-BR-6802 TCGA-CD-5813 TCGA-CG-4436 TCGA-CG-4460 
        0.10         2.17         0.76         0.39        52.96        21.99 
TCGA-CG-4466 TCGA-CG-4472 TCGA-CG-5719 TCGA-CG-5720 TCGA-CG-5727 TCGA-D7-6524 
       18.94        12.00         1.02         0.99        31.04         0.69 
TCGA-D7-6526 TCGA-D7-6818 TCGA-EQ-5647 TCGA-F1-6874 
        6.61         4.04         0.62         2.01 

$`PCDH15 WILD-TYPE`
TCGA-B7-5816 TCGA-BR-6452 TCGA-BR-6455 TCGA-BR-6457 TCGA-BR-6458 TCGA-BR-6564 
        5.62         0.95         1.41         1.35         1.35         0.82 
TCGA-BR-6565 TCGA-BR-6566 TCGA-BR-6705 TCGA-BR-6707 TCGA-BR-6709 TCGA-BR-6710 
        0.62         0.62         1.71         0.99         1.22         0.66 
TCGA-BR-6801 TCGA-BR-6803 TCGA-BR-6852 TCGA-CD-5798 TCGA-CD-5799 TCGA-CD-5800 
        1.12         0.66         0.26         0.82         0.69         0.36 
TCGA-CD-5801 TCGA-CD-5802 TCGA-CD-5803 TCGA-CG-4300 TCGA-CG-4301 TCGA-CG-4304 
        0.49         0.30         0.07        20.02         3.02        27.02 
TCGA-CG-4305 TCGA-CG-4306 TCGA-CG-4437 TCGA-CG-4438 TCGA-CG-4440 TCGA-CG-4441 
       15.95         1.02         8.05        54.05         4.01        14.01 
TCGA-CG-4443 TCGA-CG-4444 TCGA-CG-4449 TCGA-CG-4455 TCGA-CG-4462 TCGA-CG-4465 
       29.98        47.05        19.07        12.03         1.02         8.98 
TCGA-CG-4469 TCGA-CG-4474 TCGA-CG-4477 TCGA-CG-5716 TCGA-CG-5717 TCGA-CG-5718 
        7.07         1.02         1.02         1.02         6.94         1.02 
TCGA-CG-5721 TCGA-CG-5722 TCGA-CG-5723 TCGA-CG-5724 TCGA-CG-5725 TCGA-CG-5726 
        5.98         0.95        70.06        12.03        15.02        28.96 
TCGA-CG-5728 TCGA-CG-5730 TCGA-CG-5732 TCGA-CG-5733 TCGA-CG-5734 TCGA-D7-5577 
       65.10         4.01        55.04        21.07         7.99         8.65 
TCGA-D7-5578 TCGA-D7-5579 TCGA-D7-6518 TCGA-D7-6519 TCGA-D7-6520 TCGA-D7-6521 
        3.58         4.54         9.80        15.65         9.63         8.19 
TCGA-D7-6522 TCGA-D7-6525 TCGA-D7-6527 TCGA-D7-6528 TCGA-D7-6815 TCGA-D7-6817 
        6.90         5.95         4.14         1.68         3.65         4.70 
TCGA-D7-6820 TCGA-D7-6822 TCGA-F1-6177 
        2.93         4.27         6.54 

  PCDH15 MUTATED PCDH15 WILD-TYPE 
            0.10             0.07 
  PCDH15 MUTATED PCDH15 WILD-TYPE 
           52.96            70.06 
  PCDH15 MUTATED PCDH15 WILD-TYPE 
            2.09             4.14 
[1] "0.1 - 53.0 (2.1)" "0.1 - 70.1 (4.1)"
      TCGA-B7-5816       TCGA-B7-5818       TCGA-BR-6452       TCGA-BR-6455 
"PCDH15 WILD-TYPE"   "PCDH15 MUTATED" "PCDH15 WILD-TYPE" "PCDH15 WILD-TYPE" 
      TCGA-BR-6457       TCGA-BR-6458       TCGA-BR-6564       TCGA-BR-6565 
"PCDH15 WILD-TYPE" "PCDH15 WILD-TYPE" "PCDH15 WILD-TYPE" "PCDH15 WILD-TYPE" 
      TCGA-BR-6566       TCGA-BR-6705       TCGA-BR-6706       TCGA-BR-6707 
"PCDH15 WILD-TYPE" "PCDH15 WILD-TYPE"   "PCDH15 MUTATED" "PCDH15 WILD-TYPE" 
      TCGA-BR-6709       TCGA-BR-6710       TCGA-BR-6801       TCGA-BR-6802 
"PCDH15 WILD-TYPE" "PCDH15 WILD-TYPE" "PCDH15 WILD-TYPE"   "PCDH15 MUTATED" 
      TCGA-BR-6803       TCGA-BR-6852       TCGA-CD-5798       TCGA-CD-5799 
"PCDH15 WILD-TYPE" "PCDH15 WILD-TYPE" "PCDH15 WILD-TYPE" "PCDH15 WILD-TYPE" 
      TCGA-CD-5800       TCGA-CD-5801       TCGA-CD-5802       TCGA-CD-5803 
"PCDH15 WILD-TYPE" "PCDH15 WILD-TYPE" "PCDH15 WILD-TYPE" "PCDH15 WILD-TYPE" 
      TCGA-CD-5813       TCGA-CG-4300       TCGA-CG-4301       TCGA-CG-4304 
  "PCDH15 MUTATED" "PCDH15 WILD-TYPE" "PCDH15 WILD-TYPE" "PCDH15 WILD-TYPE" 
      TCGA-CG-4305       TCGA-CG-4306       TCGA-CG-4436       TCGA-CG-4437 
"PCDH15 WILD-TYPE" "PCDH15 WILD-TYPE"   "PCDH15 MUTATED" "PCDH15 WILD-TYPE" 
      TCGA-CG-4438       TCGA-CG-4440       TCGA-CG-4441       TCGA-CG-4443 
"PCDH15 WILD-TYPE" "PCDH15 WILD-TYPE" "PCDH15 WILD-TYPE" "PCDH15 WILD-TYPE" 
      TCGA-CG-4444       TCGA-CG-4449       TCGA-CG-4455       TCGA-CG-4460 
"PCDH15 WILD-TYPE" "PCDH15 WILD-TYPE" "PCDH15 WILD-TYPE"   "PCDH15 MUTATED" 
      TCGA-CG-4462       TCGA-CG-4465       TCGA-CG-4466       TCGA-CG-4469 
"PCDH15 WILD-TYPE" "PCDH15 WILD-TYPE"   "PCDH15 MUTATED" "PCDH15 WILD-TYPE" 
      TCGA-CG-4472       TCGA-CG-4474       TCGA-CG-4477       TCGA-CG-5716 
  "PCDH15 MUTATED" "PCDH15 WILD-TYPE" "PCDH15 WILD-TYPE" "PCDH15 WILD-TYPE" 
      TCGA-CG-5717       TCGA-CG-5718       TCGA-CG-5719       TCGA-CG-5720 
"PCDH15 WILD-TYPE" "PCDH15 WILD-TYPE"   "PCDH15 MUTATED"   "PCDH15 MUTATED" 
      TCGA-CG-5721       TCGA-CG-5722       TCGA-CG-5723       TCGA-CG-5724 
"PCDH15 WILD-TYPE" "PCDH15 WILD-TYPE" "PCDH15 WILD-TYPE" "PCDH15 WILD-TYPE" 
      TCGA-CG-5725       TCGA-CG-5726       TCGA-CG-5727       TCGA-CG-5728 
"PCDH15 WILD-TYPE" "PCDH15 WILD-TYPE"   "PCDH15 MUTATED" "PCDH15 WILD-TYPE" 
      TCGA-CG-5730       TCGA-CG-5732       TCGA-CG-5733       TCGA-CG-5734 
"PCDH15 WILD-TYPE" "PCDH15 WILD-TYPE" "PCDH15 WILD-TYPE" "PCDH15 WILD-TYPE" 
      TCGA-D7-5577       TCGA-D7-5578       TCGA-D7-5579       TCGA-D7-6518 
"PCDH15 WILD-TYPE" "PCDH15 WILD-TYPE" "PCDH15 WILD-TYPE" "PCDH15 WILD-TYPE" 
      TCGA-D7-6519       TCGA-D7-6520       TCGA-D7-6521       TCGA-D7-6522 
"PCDH15 WILD-TYPE" "PCDH15 WILD-TYPE" "PCDH15 WILD-TYPE" "PCDH15 WILD-TYPE" 
      TCGA-D7-6524       TCGA-D7-6525       TCGA-D7-6526       TCGA-D7-6527 
  "PCDH15 MUTATED" "PCDH15 WILD-TYPE"   "PCDH15 MUTATED" "PCDH15 WILD-TYPE" 
      TCGA-D7-6528       TCGA-D7-6815       TCGA-D7-6817       TCGA-D7-6818 
"PCDH15 WILD-TYPE" "PCDH15 WILD-TYPE" "PCDH15 WILD-TYPE"   "PCDH15 MUTATED" 
      TCGA-D7-6820       TCGA-D7-6822       TCGA-EQ-5647       TCGA-F1-6177 
"PCDH15 WILD-TYPE" "PCDH15 WILD-TYPE"   "PCDH15 MUTATED" "PCDH15 WILD-TYPE" 
      TCGA-F1-6874 
  "PCDH15 MUTATED" 
      TCGA-B7-5816       TCGA-B7-5818       TCGA-BR-6452       TCGA-BR-6455 
"PCDH15 WILD-TYPE"   "PCDH15 MUTATED" "PCDH15 WILD-TYPE" "PCDH15 WILD-TYPE" 
      TCGA-BR-6457       TCGA-BR-6458       TCGA-BR-6564       TCGA-BR-6565 
"PCDH15 WILD-TYPE" "PCDH15 WILD-TYPE" "PCDH15 WILD-TYPE" "PCDH15 WILD-TYPE" 
      TCGA-BR-6566       TCGA-BR-6705       TCGA-BR-6706       TCGA-BR-6707 
"PCDH15 WILD-TYPE" "PCDH15 WILD-TYPE"   "PCDH15 MUTATED" "PCDH15 WILD-TYPE" 
      TCGA-BR-6709       TCGA-BR-6710       TCGA-BR-6801       TCGA-BR-6802 
"PCDH15 WILD-TYPE" "PCDH15 WILD-TYPE" "PCDH15 WILD-TYPE"   "PCDH15 MUTATED" 
      TCGA-BR-6803       TCGA-BR-6852       TCGA-CD-5798       TCGA-CD-5799 
"PCDH15 WILD-TYPE" "PCDH15 WILD-TYPE" "PCDH15 WILD-TYPE" "PCDH15 WILD-TYPE" 
      TCGA-CD-5800       TCGA-CD-5801       TCGA-CD-5802       TCGA-CD-5803 
"PCDH15 WILD-TYPE" "PCDH15 WILD-TYPE" "PCDH15 WILD-TYPE" "PCDH15 WILD-TYPE" 
      TCGA-CD-5813       TCGA-CG-4300       TCGA-CG-4301       TCGA-CG-4304 
  "PCDH15 MUTATED" "PCDH15 WILD-TYPE" "PCDH15 WILD-TYPE" "PCDH15 WILD-TYPE" 
      TCGA-CG-4305       TCGA-CG-4306       TCGA-CG-4436       TCGA-CG-4437 
"PCDH15 WILD-TYPE" "PCDH15 WILD-TYPE"   "PCDH15 MUTATED" "PCDH15 WILD-TYPE" 
      TCGA-CG-4438       TCGA-CG-4440       TCGA-CG-4441       TCGA-CG-4443 
"PCDH15 WILD-TYPE" "PCDH15 WILD-TYPE" "PCDH15 WILD-TYPE" "PCDH15 WILD-TYPE" 
      TCGA-CG-4444       TCGA-CG-4449       TCGA-CG-4455       TCGA-CG-4460 
"PCDH15 WILD-TYPE" "PCDH15 WILD-TYPE" "PCDH15 WILD-TYPE"   "PCDH15 MUTATED" 
      TCGA-CG-4462       TCGA-CG-4465       TCGA-CG-4466       TCGA-CG-4469 
"PCDH15 WILD-TYPE" "PCDH15 WILD-TYPE"   "PCDH15 MUTATED" "PCDH15 WILD-TYPE" 
      TCGA-CG-4472       TCGA-CG-4474       TCGA-CG-4477       TCGA-CG-5716 
  "PCDH15 MUTATED" "PCDH15 WILD-TYPE" "PCDH15 WILD-TYPE" "PCDH15 WILD-TYPE" 
      TCGA-CG-5717       TCGA-CG-5718       TCGA-CG-5719       TCGA-CG-5720 
"PCDH15 WILD-TYPE" "PCDH15 WILD-TYPE"   "PCDH15 MUTATED"   "PCDH15 MUTATED" 
      TCGA-CG-5721       TCGA-CG-5722       TCGA-CG-5723       TCGA-CG-5724 
"PCDH15 WILD-TYPE" "PCDH15 WILD-TYPE" "PCDH15 WILD-TYPE" "PCDH15 WILD-TYPE" 
      TCGA-CG-5725       TCGA-CG-5726       TCGA-CG-5727       TCGA-CG-5728 
"PCDH15 WILD-TYPE" "PCDH15 WILD-TYPE"   "PCDH15 MUTATED" "PCDH15 WILD-TYPE" 
      TCGA-CG-5730       TCGA-CG-5732       TCGA-CG-5733       TCGA-CG-5734 
"PCDH15 WILD-TYPE" "PCDH15 WILD-TYPE" "PCDH15 WILD-TYPE" "PCDH15 WILD-TYPE" 
      TCGA-D7-5577       TCGA-D7-5578       TCGA-D7-5579       TCGA-D7-6518 
"PCDH15 WILD-TYPE" "PCDH15 WILD-TYPE" "PCDH15 WILD-TYPE" "PCDH15 WILD-TYPE" 
      TCGA-D7-6519       TCGA-D7-6520       TCGA-D7-6521       TCGA-D7-6522 
"PCDH15 WILD-TYPE" "PCDH15 WILD-TYPE" "PCDH15 WILD-TYPE" "PCDH15 WILD-TYPE" 
      TCGA-D7-6524       TCGA-D7-6525       TCGA-D7-6526       TCGA-D7-6527 
  "PCDH15 MUTATED" "PCDH15 WILD-TYPE"   "PCDH15 MUTATED" "PCDH15 WILD-TYPE" 
      TCGA-D7-6528       TCGA-D7-6815       TCGA-D7-6817       TCGA-D7-6818 
"PCDH15 WILD-TYPE" "PCDH15 WILD-TYPE" "PCDH15 WILD-TYPE"   "PCDH15 MUTATED" 
      TCGA-D7-6820       TCGA-D7-6822       TCGA-EQ-5647       TCGA-F1-6177 
"PCDH15 WILD-TYPE" "PCDH15 WILD-TYPE"   "PCDH15 MUTATED" "PCDH15 WILD-TYPE" 
      TCGA-F1-6874 
  "PCDH15 MUTATED" 
      TCGA-B7-5816       TCGA-B7-5818       TCGA-BR-6452       TCGA-BR-6455 
"PCDH15 WILD-TYPE"   "PCDH15 MUTATED" "PCDH15 WILD-TYPE" "PCDH15 WILD-TYPE" 
      TCGA-BR-6457       TCGA-BR-6458       TCGA-BR-6564       TCGA-BR-6565 
"PCDH15 WILD-TYPE" "PCDH15 WILD-TYPE" "PCDH15 WILD-TYPE" "PCDH15 WILD-TYPE" 
      TCGA-BR-6566       TCGA-BR-6705       TCGA-BR-6706       TCGA-BR-6707 
"PCDH15 WILD-TYPE" "PCDH15 WILD-TYPE"   "PCDH15 MUTATED" "PCDH15 WILD-TYPE" 
      TCGA-BR-6709       TCGA-BR-6710       TCGA-BR-6801       TCGA-BR-6802 
"PCDH15 WILD-TYPE" "PCDH15 WILD-TYPE" "PCDH15 WILD-TYPE"   "PCDH15 MUTATED" 
      TCGA-BR-6803       TCGA-BR-6852       TCGA-CD-5798       TCGA-CD-5799 
"PCDH15 WILD-TYPE" "PCDH15 WILD-TYPE" "PCDH15 WILD-TYPE" "PCDH15 WILD-TYPE" 
      TCGA-CD-5800       TCGA-CD-5801       TCGA-CD-5802       TCGA-CD-5803 
"PCDH15 WILD-TYPE" "PCDH15 WILD-TYPE" "PCDH15 WILD-TYPE" "PCDH15 WILD-TYPE" 
      TCGA-CD-5813       TCGA-CG-4300       TCGA-CG-4301       TCGA-CG-4304 
  "PCDH15 MUTATED" "PCDH15 WILD-TYPE" "PCDH15 WILD-TYPE" "PCDH15 WILD-TYPE" 
      TCGA-CG-4305       TCGA-CG-4306       TCGA-CG-4436       TCGA-CG-4437 
"PCDH15 WILD-TYPE" "PCDH15 WILD-TYPE"   "PCDH15 MUTATED" "PCDH15 WILD-TYPE" 
      TCGA-CG-4438       TCGA-CG-4440       TCGA-CG-4441       TCGA-CG-4443 
"PCDH15 WILD-TYPE" "PCDH15 WILD-TYPE" "PCDH15 WILD-TYPE" "PCDH15 WILD-TYPE" 
      TCGA-CG-4444       TCGA-CG-4449       TCGA-CG-4455       TCGA-CG-4460 
"PCDH15 WILD-TYPE" "PCDH15 WILD-TYPE" "PCDH15 WILD-TYPE"   "PCDH15 MUTATED" 
      TCGA-CG-4462       TCGA-CG-4465       TCGA-CG-4466       TCGA-CG-4469 
"PCDH15 WILD-TYPE" "PCDH15 WILD-TYPE"   "PCDH15 MUTATED" "PCDH15 WILD-TYPE" 
      TCGA-CG-4472       TCGA-CG-4474       TCGA-CG-4477       TCGA-CG-5716 
  "PCDH15 MUTATED" "PCDH15 WILD-TYPE" "PCDH15 WILD-TYPE" "PCDH15 WILD-TYPE" 
      TCGA-CG-5717       TCGA-CG-5718       TCGA-CG-5719       TCGA-CG-5720 
"PCDH15 WILD-TYPE" "PCDH15 WILD-TYPE"   "PCDH15 MUTATED"   "PCDH15 MUTATED" 
      TCGA-CG-5721       TCGA-CG-5722       TCGA-CG-5723       TCGA-CG-5724 
"PCDH15 WILD-TYPE" "PCDH15 WILD-TYPE" "PCDH15 WILD-TYPE" "PCDH15 WILD-TYPE" 
      TCGA-CG-5725       TCGA-CG-5726       TCGA-CG-5727       TCGA-CG-5728 
"PCDH15 WILD-TYPE" "PCDH15 WILD-TYPE"   "PCDH15 MUTATED" "PCDH15 WILD-TYPE" 
      TCGA-CG-5730       TCGA-CG-5732       TCGA-CG-5733       TCGA-CG-5734 
"PCDH15 WILD-TYPE" "PCDH15 WILD-TYPE" "PCDH15 WILD-TYPE" "PCDH15 WILD-TYPE" 
      TCGA-D7-5577       TCGA-D7-5578       TCGA-D7-5579       TCGA-D7-6518 
"PCDH15 WILD-TYPE" "PCDH15 WILD-TYPE" "PCDH15 WILD-TYPE" "PCDH15 WILD-TYPE" 
      TCGA-D7-6519       TCGA-D7-6520       TCGA-D7-6521       TCGA-D7-6522 
"PCDH15 WILD-TYPE" "PCDH15 WILD-TYPE" "PCDH15 WILD-TYPE" "PCDH15 WILD-TYPE" 
      TCGA-D7-6524       TCGA-D7-6525       TCGA-D7-6526       TCGA-D7-6527 
  "PCDH15 MUTATED" "PCDH15 WILD-TYPE"   "PCDH15 MUTATED" "PCDH15 WILD-TYPE" 
      TCGA-D7-6528       TCGA-D7-6815       TCGA-D7-6817       TCGA-D7-6818 
"PCDH15 WILD-TYPE" "PCDH15 WILD-TYPE" "PCDH15 WILD-TYPE"   "PCDH15 MUTATED" 
      TCGA-D7-6820       TCGA-D7-6822       TCGA-EQ-5647       TCGA-F1-6177 
"PCDH15 WILD-TYPE" "PCDH15 WILD-TYPE"   "PCDH15 MUTATED" "PCDH15 WILD-TYPE" 
      TCGA-F1-6874 
  "PCDH15 MUTATED" 
[1] "hr=" "1.1"
D15V2, continuous
D15V3, binary
[1] "tbl2"
                  cls
clus               [,1] [,2]
  PCDH15 MUTATED     10   12
  PCDH15 WILD-TYPE   36   58
        clus
vv       PCDH15 MUTATED PCDH15 WILD-TYPE
  FEMALE             10               36
  MALE               12               58
D15V4, multiclass
D15V5, multiclass
    clus
vv   PCDH15 MUTATED PCDH15 WILD-TYPE
  T1              1                3
  T2              9               37
  T3              6               35
  T4              5               10
D15V6, multiclass
    clus
vv   PCDH15 MUTATED PCDH15 WILD-TYPE
  N0              8               27
  N1              8               31
  N2              2               17
  N3              2               10
D15V7, multiclass
    clus
vv   PCDH15 MUTATED PCDH15 WILD-TYPE
  M0             18               81
  M1              3               10
  MX              1                3
D15V8, multiclass
     clus
vv    PCDH15 MUTATED PCDH15 WILD-TYPE
  I                5               13
  II               3               29
  III              5               24
  IV               6               15

Clustering(16) Variable = HLA-B MUTATION ANALYSIS
D16V1, survival
                 sevent
clus2              0  1
  HLA-B MUTATED    4  2
  HLA-B WILD-TYPE 67 12
  HLA-B MUTATED HLA-B WILD-TYPE 
              6              79 
  HLA-B MUTATED HLA-B WILD-TYPE 
              2              12 
$`HLA-B MUTATED`
TCGA-B7-5816 TCGA-BR-6852 TCGA-CG-4460 TCGA-CG-5726 TCGA-CG-5728 TCGA-F1-6874 
        5.62         0.26        21.99        28.96        65.10         2.01 

$`HLA-B WILD-TYPE`
TCGA-B7-5818 TCGA-BR-6452 TCGA-BR-6455 TCGA-BR-6457 TCGA-BR-6458 TCGA-BR-6564 
        0.10         0.95         1.41         1.35         1.35         0.82 
TCGA-BR-6565 TCGA-BR-6566 TCGA-BR-6705 TCGA-BR-6706 TCGA-BR-6707 TCGA-BR-6709 
        0.62         0.62         1.71         2.17         0.99         1.22 
TCGA-BR-6710 TCGA-BR-6801 TCGA-BR-6802 TCGA-BR-6803 TCGA-CD-5798 TCGA-CD-5799 
        0.66         1.12         0.76         0.66         0.82         0.69 
TCGA-CD-5800 TCGA-CD-5801 TCGA-CD-5802 TCGA-CD-5803 TCGA-CD-5813 TCGA-CG-4300 
        0.36         0.49         0.30         0.07         0.39        20.02 
TCGA-CG-4301 TCGA-CG-4304 TCGA-CG-4305 TCGA-CG-4306 TCGA-CG-4436 TCGA-CG-4437 
        3.02        27.02        15.95         1.02        52.96         8.05 
TCGA-CG-4438 TCGA-CG-4440 TCGA-CG-4441 TCGA-CG-4443 TCGA-CG-4444 TCGA-CG-4449 
       54.05         4.01        14.01        29.98        47.05        19.07 
TCGA-CG-4455 TCGA-CG-4462 TCGA-CG-4465 TCGA-CG-4466 TCGA-CG-4469 TCGA-CG-4472 
       12.03         1.02         8.98        18.94         7.07        12.00 
TCGA-CG-4474 TCGA-CG-4477 TCGA-CG-5716 TCGA-CG-5717 TCGA-CG-5718 TCGA-CG-5719 
        1.02         1.02         1.02         6.94         1.02         1.02 
TCGA-CG-5720 TCGA-CG-5721 TCGA-CG-5722 TCGA-CG-5723 TCGA-CG-5724 TCGA-CG-5725 
        0.99         5.98         0.95        70.06        12.03        15.02 
TCGA-CG-5727 TCGA-CG-5730 TCGA-CG-5732 TCGA-CG-5733 TCGA-CG-5734 TCGA-D7-5577 
       31.04         4.01        55.04        21.07         7.99         8.65 
TCGA-D7-5578 TCGA-D7-5579 TCGA-D7-6518 TCGA-D7-6519 TCGA-D7-6520 TCGA-D7-6521 
        3.58         4.54         9.80        15.65         9.63         8.19 
TCGA-D7-6522 TCGA-D7-6524 TCGA-D7-6525 TCGA-D7-6526 TCGA-D7-6527 TCGA-D7-6528 
        6.90         0.69         5.95         6.61         4.14         1.68 
TCGA-D7-6815 TCGA-D7-6817 TCGA-D7-6818 TCGA-D7-6820 TCGA-D7-6822 TCGA-EQ-5647 
        3.65         4.70         4.04         2.93         4.27         0.62 
TCGA-F1-6177 
        6.54 

  HLA-B MUTATED HLA-B WILD-TYPE 
           0.26            0.07 
  HLA-B MUTATED HLA-B WILD-TYPE 
          65.10           70.06 
  HLA-B MUTATED HLA-B WILD-TYPE 
         13.805           4.010 
[1] "0.3 - 65.1 (13.8)" "0.1 - 70.1 (4.0)" 
     TCGA-B7-5816      TCGA-B7-5818      TCGA-BR-6452      TCGA-BR-6455 
  "HLA-B MUTATED" "HLA-B WILD-TYPE" "HLA-B WILD-TYPE" "HLA-B WILD-TYPE" 
     TCGA-BR-6457      TCGA-BR-6458      TCGA-BR-6564      TCGA-BR-6565 
"HLA-B WILD-TYPE" "HLA-B WILD-TYPE" "HLA-B WILD-TYPE" "HLA-B WILD-TYPE" 
     TCGA-BR-6566      TCGA-BR-6705      TCGA-BR-6706      TCGA-BR-6707 
"HLA-B WILD-TYPE" "HLA-B WILD-TYPE" "HLA-B WILD-TYPE" "HLA-B WILD-TYPE" 
     TCGA-BR-6709      TCGA-BR-6710      TCGA-BR-6801      TCGA-BR-6802 
"HLA-B WILD-TYPE" "HLA-B WILD-TYPE" "HLA-B WILD-TYPE" "HLA-B WILD-TYPE" 
     TCGA-BR-6803      TCGA-BR-6852      TCGA-CD-5798      TCGA-CD-5799 
"HLA-B WILD-TYPE"   "HLA-B MUTATED" "HLA-B WILD-TYPE" "HLA-B WILD-TYPE" 
     TCGA-CD-5800      TCGA-CD-5801      TCGA-CD-5802      TCGA-CD-5803 
"HLA-B WILD-TYPE" "HLA-B WILD-TYPE" "HLA-B WILD-TYPE" "HLA-B WILD-TYPE" 
     TCGA-CD-5813      TCGA-CG-4300      TCGA-CG-4301      TCGA-CG-4304 
"HLA-B WILD-TYPE" "HLA-B WILD-TYPE" "HLA-B WILD-TYPE" "HLA-B WILD-TYPE" 
     TCGA-CG-4305      TCGA-CG-4306      TCGA-CG-4436      TCGA-CG-4437 
"HLA-B WILD-TYPE" "HLA-B WILD-TYPE" "HLA-B WILD-TYPE" "HLA-B WILD-TYPE" 
     TCGA-CG-4438      TCGA-CG-4440      TCGA-CG-4441      TCGA-CG-4443 
"HLA-B WILD-TYPE" "HLA-B WILD-TYPE" "HLA-B WILD-TYPE" "HLA-B WILD-TYPE" 
     TCGA-CG-4444      TCGA-CG-4449      TCGA-CG-4455      TCGA-CG-4460 
"HLA-B WILD-TYPE" "HLA-B WILD-TYPE" "HLA-B WILD-TYPE"   "HLA-B MUTATED" 
     TCGA-CG-4462      TCGA-CG-4465      TCGA-CG-4466      TCGA-CG-4469 
"HLA-B WILD-TYPE" "HLA-B WILD-TYPE" "HLA-B WILD-TYPE" "HLA-B WILD-TYPE" 
     TCGA-CG-4472      TCGA-CG-4474      TCGA-CG-4477      TCGA-CG-5716 
"HLA-B WILD-TYPE" "HLA-B WILD-TYPE" "HLA-B WILD-TYPE" "HLA-B WILD-TYPE" 
     TCGA-CG-5717      TCGA-CG-5718      TCGA-CG-5719      TCGA-CG-5720 
"HLA-B WILD-TYPE" "HLA-B WILD-TYPE" "HLA-B WILD-TYPE" "HLA-B WILD-TYPE" 
     TCGA-CG-5721      TCGA-CG-5722      TCGA-CG-5723      TCGA-CG-5724 
"HLA-B WILD-TYPE" "HLA-B WILD-TYPE" "HLA-B WILD-TYPE" "HLA-B WILD-TYPE" 
     TCGA-CG-5725      TCGA-CG-5726      TCGA-CG-5727      TCGA-CG-5728 
"HLA-B WILD-TYPE"   "HLA-B MUTATED" "HLA-B WILD-TYPE"   "HLA-B MUTATED" 
     TCGA-CG-5730      TCGA-CG-5732      TCGA-CG-5733      TCGA-CG-5734 
"HLA-B WILD-TYPE" "HLA-B WILD-TYPE" "HLA-B WILD-TYPE" "HLA-B WILD-TYPE" 
     TCGA-D7-5577      TCGA-D7-5578      TCGA-D7-5579      TCGA-D7-6518 
"HLA-B WILD-TYPE" "HLA-B WILD-TYPE" "HLA-B WILD-TYPE" "HLA-B WILD-TYPE" 
     TCGA-D7-6519      TCGA-D7-6520      TCGA-D7-6521      TCGA-D7-6522 
"HLA-B WILD-TYPE" "HLA-B WILD-TYPE" "HLA-B WILD-TYPE" "HLA-B WILD-TYPE" 
     TCGA-D7-6524      TCGA-D7-6525      TCGA-D7-6526      TCGA-D7-6527 
"HLA-B WILD-TYPE" "HLA-B WILD-TYPE" "HLA-B WILD-TYPE" "HLA-B WILD-TYPE" 
     TCGA-D7-6528      TCGA-D7-6815      TCGA-D7-6817      TCGA-D7-6818 
"HLA-B WILD-TYPE" "HLA-B WILD-TYPE" "HLA-B WILD-TYPE" "HLA-B WILD-TYPE" 
     TCGA-D7-6820      TCGA-D7-6822      TCGA-EQ-5647      TCGA-F1-6177 
"HLA-B WILD-TYPE" "HLA-B WILD-TYPE" "HLA-B WILD-TYPE" "HLA-B WILD-TYPE" 
     TCGA-F1-6874 
  "HLA-B MUTATED" 
     TCGA-B7-5816      TCGA-B7-5818      TCGA-BR-6452      TCGA-BR-6455 
  "HLA-B MUTATED" "HLA-B WILD-TYPE" "HLA-B WILD-TYPE" "HLA-B WILD-TYPE" 
     TCGA-BR-6457      TCGA-BR-6458      TCGA-BR-6564      TCGA-BR-6565 
"HLA-B WILD-TYPE" "HLA-B WILD-TYPE" "HLA-B WILD-TYPE" "HLA-B WILD-TYPE" 
     TCGA-BR-6566      TCGA-BR-6705      TCGA-BR-6706      TCGA-BR-6707 
"HLA-B WILD-TYPE" "HLA-B WILD-TYPE" "HLA-B WILD-TYPE" "HLA-B WILD-TYPE" 
     TCGA-BR-6709      TCGA-BR-6710      TCGA-BR-6801      TCGA-BR-6802 
"HLA-B WILD-TYPE" "HLA-B WILD-TYPE" "HLA-B WILD-TYPE" "HLA-B WILD-TYPE" 
     TCGA-BR-6803      TCGA-BR-6852      TCGA-CD-5798      TCGA-CD-5799 
"HLA-B WILD-TYPE"   "HLA-B MUTATED" "HLA-B WILD-TYPE" "HLA-B WILD-TYPE" 
     TCGA-CD-5800      TCGA-CD-5801      TCGA-CD-5802      TCGA-CD-5803 
"HLA-B WILD-TYPE" "HLA-B WILD-TYPE" "HLA-B WILD-TYPE" "HLA-B WILD-TYPE" 
     TCGA-CD-5813      TCGA-CG-4300      TCGA-CG-4301      TCGA-CG-4304 
"HLA-B WILD-TYPE" "HLA-B WILD-TYPE" "HLA-B WILD-TYPE" "HLA-B WILD-TYPE" 
     TCGA-CG-4305      TCGA-CG-4306      TCGA-CG-4436      TCGA-CG-4437 
"HLA-B WILD-TYPE" "HLA-B WILD-TYPE" "HLA-B WILD-TYPE" "HLA-B WILD-TYPE" 
     TCGA-CG-4438      TCGA-CG-4440      TCGA-CG-4441      TCGA-CG-4443 
"HLA-B WILD-TYPE" "HLA-B WILD-TYPE" "HLA-B WILD-TYPE" "HLA-B WILD-TYPE" 
     TCGA-CG-4444      TCGA-CG-4449      TCGA-CG-4455      TCGA-CG-4460 
"HLA-B WILD-TYPE" "HLA-B WILD-TYPE" "HLA-B WILD-TYPE"   "HLA-B MUTATED" 
     TCGA-CG-4462      TCGA-CG-4465      TCGA-CG-4466      TCGA-CG-4469 
"HLA-B WILD-TYPE" "HLA-B WILD-TYPE" "HLA-B WILD-TYPE" "HLA-B WILD-TYPE" 
     TCGA-CG-4472      TCGA-CG-4474      TCGA-CG-4477      TCGA-CG-5716 
"HLA-B WILD-TYPE" "HLA-B WILD-TYPE" "HLA-B WILD-TYPE" "HLA-B WILD-TYPE" 
     TCGA-CG-5717      TCGA-CG-5718      TCGA-CG-5719      TCGA-CG-5720 
"HLA-B WILD-TYPE" "HLA-B WILD-TYPE" "HLA-B WILD-TYPE" "HLA-B WILD-TYPE" 
     TCGA-CG-5721      TCGA-CG-5722      TCGA-CG-5723      TCGA-CG-5724 
"HLA-B WILD-TYPE" "HLA-B WILD-TYPE" "HLA-B WILD-TYPE" "HLA-B WILD-TYPE" 
     TCGA-CG-5725      TCGA-CG-5726      TCGA-CG-5727      TCGA-CG-5728 
"HLA-B WILD-TYPE"   "HLA-B MUTATED" "HLA-B WILD-TYPE"   "HLA-B MUTATED" 
     TCGA-CG-5730      TCGA-CG-5732      TCGA-CG-5733      TCGA-CG-5734 
"HLA-B WILD-TYPE" "HLA-B WILD-TYPE" "HLA-B WILD-TYPE" "HLA-B WILD-TYPE" 
     TCGA-D7-5577      TCGA-D7-5578      TCGA-D7-5579      TCGA-D7-6518 
"HLA-B WILD-TYPE" "HLA-B WILD-TYPE" "HLA-B WILD-TYPE" "HLA-B WILD-TYPE" 
     TCGA-D7-6519      TCGA-D7-6520      TCGA-D7-6521      TCGA-D7-6522 
"HLA-B WILD-TYPE" "HLA-B WILD-TYPE" "HLA-B WILD-TYPE" "HLA-B WILD-TYPE" 
     TCGA-D7-6524      TCGA-D7-6525      TCGA-D7-6526      TCGA-D7-6527 
"HLA-B WILD-TYPE" "HLA-B WILD-TYPE" "HLA-B WILD-TYPE" "HLA-B WILD-TYPE" 
     TCGA-D7-6528      TCGA-D7-6815      TCGA-D7-6817      TCGA-D7-6818 
"HLA-B WILD-TYPE" "HLA-B WILD-TYPE" "HLA-B WILD-TYPE" "HLA-B WILD-TYPE" 
     TCGA-D7-6820      TCGA-D7-6822      TCGA-EQ-5647      TCGA-F1-6177 
"HLA-B WILD-TYPE" "HLA-B WILD-TYPE" "HLA-B WILD-TYPE" "HLA-B WILD-TYPE" 
     TCGA-F1-6874 
  "HLA-B MUTATED" 
     TCGA-B7-5816      TCGA-B7-5818      TCGA-BR-6452      TCGA-BR-6455 
  "HLA-B MUTATED" "HLA-B WILD-TYPE" "HLA-B WILD-TYPE" "HLA-B WILD-TYPE" 
     TCGA-BR-6457      TCGA-BR-6458      TCGA-BR-6564      TCGA-BR-6565 
"HLA-B WILD-TYPE" "HLA-B WILD-TYPE" "HLA-B WILD-TYPE" "HLA-B WILD-TYPE" 
     TCGA-BR-6566      TCGA-BR-6705      TCGA-BR-6706      TCGA-BR-6707 
"HLA-B WILD-TYPE" "HLA-B WILD-TYPE" "HLA-B WILD-TYPE" "HLA-B WILD-TYPE" 
     TCGA-BR-6709      TCGA-BR-6710      TCGA-BR-6801      TCGA-BR-6802 
"HLA-B WILD-TYPE" "HLA-B WILD-TYPE" "HLA-B WILD-TYPE" "HLA-B WILD-TYPE" 
     TCGA-BR-6803      TCGA-BR-6852      TCGA-CD-5798      TCGA-CD-5799 
"HLA-B WILD-TYPE"   "HLA-B MUTATED" "HLA-B WILD-TYPE" "HLA-B WILD-TYPE" 
     TCGA-CD-5800      TCGA-CD-5801      TCGA-CD-5802      TCGA-CD-5803 
"HLA-B WILD-TYPE" "HLA-B WILD-TYPE" "HLA-B WILD-TYPE" "HLA-B WILD-TYPE" 
     TCGA-CD-5813      TCGA-CG-4300      TCGA-CG-4301      TCGA-CG-4304 
"HLA-B WILD-TYPE" "HLA-B WILD-TYPE" "HLA-B WILD-TYPE" "HLA-B WILD-TYPE" 
     TCGA-CG-4305      TCGA-CG-4306      TCGA-CG-4436      TCGA-CG-4437 
"HLA-B WILD-TYPE" "HLA-B WILD-TYPE" "HLA-B WILD-TYPE" "HLA-B WILD-TYPE" 
     TCGA-CG-4438      TCGA-CG-4440      TCGA-CG-4441      TCGA-CG-4443 
"HLA-B WILD-TYPE" "HLA-B WILD-TYPE" "HLA-B WILD-TYPE" "HLA-B WILD-TYPE" 
     TCGA-CG-4444      TCGA-CG-4449      TCGA-CG-4455      TCGA-CG-4460 
"HLA-B WILD-TYPE" "HLA-B WILD-TYPE" "HLA-B WILD-TYPE"   "HLA-B MUTATED" 
     TCGA-CG-4462      TCGA-CG-4465      TCGA-CG-4466      TCGA-CG-4469 
"HLA-B WILD-TYPE" "HLA-B WILD-TYPE" "HLA-B WILD-TYPE" "HLA-B WILD-TYPE" 
     TCGA-CG-4472      TCGA-CG-4474      TCGA-CG-4477      TCGA-CG-5716 
"HLA-B WILD-TYPE" "HLA-B WILD-TYPE" "HLA-B WILD-TYPE" "HLA-B WILD-TYPE" 
     TCGA-CG-5717      TCGA-CG-5718      TCGA-CG-5719      TCGA-CG-5720 
"HLA-B WILD-TYPE" "HLA-B WILD-TYPE" "HLA-B WILD-TYPE" "HLA-B WILD-TYPE" 
     TCGA-CG-5721      TCGA-CG-5722      TCGA-CG-5723      TCGA-CG-5724 
"HLA-B WILD-TYPE" "HLA-B WILD-TYPE" "HLA-B WILD-TYPE" "HLA-B WILD-TYPE" 
     TCGA-CG-5725      TCGA-CG-5726      TCGA-CG-5727      TCGA-CG-5728 
"HLA-B WILD-TYPE"   "HLA-B MUTATED" "HLA-B WILD-TYPE"   "HLA-B MUTATED" 
     TCGA-CG-5730      TCGA-CG-5732      TCGA-CG-5733      TCGA-CG-5734 
"HLA-B WILD-TYPE" "HLA-B WILD-TYPE" "HLA-B WILD-TYPE" "HLA-B WILD-TYPE" 
     TCGA-D7-5577      TCGA-D7-5578      TCGA-D7-5579      TCGA-D7-6518 
"HLA-B WILD-TYPE" "HLA-B WILD-TYPE" "HLA-B WILD-TYPE" "HLA-B WILD-TYPE" 
     TCGA-D7-6519      TCGA-D7-6520      TCGA-D7-6521      TCGA-D7-6522 
"HLA-B WILD-TYPE" "HLA-B WILD-TYPE" "HLA-B WILD-TYPE" "HLA-B WILD-TYPE" 
     TCGA-D7-6524      TCGA-D7-6525      TCGA-D7-6526      TCGA-D7-6527 
"HLA-B WILD-TYPE" "HLA-B WILD-TYPE" "HLA-B WILD-TYPE" "HLA-B WILD-TYPE" 
     TCGA-D7-6528      TCGA-D7-6815      TCGA-D7-6817      TCGA-D7-6818 
"HLA-B WILD-TYPE" "HLA-B WILD-TYPE" "HLA-B WILD-TYPE" "HLA-B WILD-TYPE" 
     TCGA-D7-6820      TCGA-D7-6822      TCGA-EQ-5647      TCGA-F1-6177 
"HLA-B WILD-TYPE" "HLA-B WILD-TYPE" "HLA-B WILD-TYPE" "HLA-B WILD-TYPE" 
     TCGA-F1-6874 
  "HLA-B MUTATED" 
[1] "hr=" "1"  
D16V2, continuous
D16V3, binary
[1] "tbl2"
                 cls
clus              [,1] [,2]
  HLA-B MUTATED      7    2
  HLA-B WILD-TYPE   39   68
        clus
vv       HLA-B MUTATED HLA-B WILD-TYPE
  FEMALE             7              39
  MALE               2              68
D16V4, multiclass
D16V5, multiclass
    clus
vv   HLA-B MUTATED HLA-B WILD-TYPE
  T1             1               3
  T2             3              43
  T3             2              39
  T4             3              12
D16V6, multiclass
    clus
vv   HLA-B MUTATED HLA-B WILD-TYPE
  N0             6              29
  N1             2              37
  N2             0              19
  N3             0              12
D16V7, multiclass
    clus
vv   HLA-B MUTATED HLA-B WILD-TYPE
  M0             7              92
  M1             1              12
  MX             1               3
D16V8, multiclass
     clus
vv    HLA-B MUTATED HLA-B WILD-TYPE
  I               3              15
  II              1              31
  III             3              26
  IV              1              20

Clustering(17) Variable = TUSC3 MUTATION ANALYSIS
D17V1, survival
                 sevent
clus2              0  1
  TUSC3 MUTATED    6  1
  TUSC3 WILD-TYPE 65 13
  TUSC3 MUTATED TUSC3 WILD-TYPE 
              7              78 
  TUSC3 MUTATED TUSC3 WILD-TYPE 
              1              13 
$`TUSC3 MUTATED`
TCGA-BR-6452 TCGA-BR-6457 TCGA-BR-6802 TCGA-CG-4460 TCGA-CG-5727 TCGA-D7-6524 
        0.95         1.35         0.76        21.99        31.04         0.69 
TCGA-D7-6818 
        4.04 

$`TUSC3 WILD-TYPE`
TCGA-B7-5816 TCGA-B7-5818 TCGA-BR-6455 TCGA-BR-6458 TCGA-BR-6564 TCGA-BR-6565 
        5.62         0.10         1.41         1.35         0.82         0.62 
TCGA-BR-6566 TCGA-BR-6705 TCGA-BR-6706 TCGA-BR-6707 TCGA-BR-6709 TCGA-BR-6710 
        0.62         1.71         2.17         0.99         1.22         0.66 
TCGA-BR-6801 TCGA-BR-6803 TCGA-BR-6852 TCGA-CD-5798 TCGA-CD-5799 TCGA-CD-5800 
        1.12         0.66         0.26         0.82         0.69         0.36 
TCGA-CD-5801 TCGA-CD-5802 TCGA-CD-5803 TCGA-CD-5813 TCGA-CG-4300 TCGA-CG-4301 
        0.49         0.30         0.07         0.39        20.02         3.02 
TCGA-CG-4304 TCGA-CG-4305 TCGA-CG-4306 TCGA-CG-4436 TCGA-CG-4437 TCGA-CG-4438 
       27.02        15.95         1.02        52.96         8.05        54.05 
TCGA-CG-4440 TCGA-CG-4441 TCGA-CG-4443 TCGA-CG-4444 TCGA-CG-4449 TCGA-CG-4455 
        4.01        14.01        29.98        47.05        19.07        12.03 
TCGA-CG-4462 TCGA-CG-4465 TCGA-CG-4466 TCGA-CG-4469 TCGA-CG-4472 TCGA-CG-4474 
        1.02         8.98        18.94         7.07        12.00         1.02 
TCGA-CG-4477 TCGA-CG-5716 TCGA-CG-5717 TCGA-CG-5718 TCGA-CG-5719 TCGA-CG-5720 
        1.02         1.02         6.94         1.02         1.02         0.99 
TCGA-CG-5721 TCGA-CG-5722 TCGA-CG-5723 TCGA-CG-5724 TCGA-CG-5725 TCGA-CG-5726 
        5.98         0.95        70.06        12.03        15.02        28.96 
TCGA-CG-5728 TCGA-CG-5730 TCGA-CG-5732 TCGA-CG-5733 TCGA-CG-5734 TCGA-D7-5577 
       65.10         4.01        55.04        21.07         7.99         8.65 
TCGA-D7-5578 TCGA-D7-5579 TCGA-D7-6518 TCGA-D7-6519 TCGA-D7-6520 TCGA-D7-6521 
        3.58         4.54         9.80        15.65         9.63         8.19 
TCGA-D7-6522 TCGA-D7-6525 TCGA-D7-6526 TCGA-D7-6527 TCGA-D7-6528 TCGA-D7-6815 
        6.90         5.95         6.61         4.14         1.68         3.65 
TCGA-D7-6817 TCGA-D7-6820 TCGA-D7-6822 TCGA-EQ-5647 TCGA-F1-6177 TCGA-F1-6874 
        4.70         2.93         4.27         0.62         6.54         2.01 

  TUSC3 MUTATED TUSC3 WILD-TYPE 
           0.69            0.07 
  TUSC3 MUTATED TUSC3 WILD-TYPE 
          31.04           70.06 
  TUSC3 MUTATED TUSC3 WILD-TYPE 
          1.350           4.075 
[1] "0.7 - 31.0 (1.4)" "0.1 - 70.1 (4.1)"
     TCGA-B7-5816      TCGA-B7-5818      TCGA-BR-6452      TCGA-BR-6455 
"TUSC3 WILD-TYPE" "TUSC3 WILD-TYPE"   "TUSC3 MUTATED" "TUSC3 WILD-TYPE" 
     TCGA-BR-6457      TCGA-BR-6458      TCGA-BR-6564      TCGA-BR-6565 
  "TUSC3 MUTATED" "TUSC3 WILD-TYPE" "TUSC3 WILD-TYPE" "TUSC3 WILD-TYPE" 
     TCGA-BR-6566      TCGA-BR-6705      TCGA-BR-6706      TCGA-BR-6707 
"TUSC3 WILD-TYPE" "TUSC3 WILD-TYPE" "TUSC3 WILD-TYPE" "TUSC3 WILD-TYPE" 
     TCGA-BR-6709      TCGA-BR-6710      TCGA-BR-6801      TCGA-BR-6802 
"TUSC3 WILD-TYPE" "TUSC3 WILD-TYPE" "TUSC3 WILD-TYPE"   "TUSC3 MUTATED" 
     TCGA-BR-6803      TCGA-BR-6852      TCGA-CD-5798      TCGA-CD-5799 
"TUSC3 WILD-TYPE" "TUSC3 WILD-TYPE" "TUSC3 WILD-TYPE" "TUSC3 WILD-TYPE" 
     TCGA-CD-5800      TCGA-CD-5801      TCGA-CD-5802      TCGA-CD-5803 
"TUSC3 WILD-TYPE" "TUSC3 WILD-TYPE" "TUSC3 WILD-TYPE" "TUSC3 WILD-TYPE" 
     TCGA-CD-5813      TCGA-CG-4300      TCGA-CG-4301      TCGA-CG-4304 
"TUSC3 WILD-TYPE" "TUSC3 WILD-TYPE" "TUSC3 WILD-TYPE" "TUSC3 WILD-TYPE" 
     TCGA-CG-4305      TCGA-CG-4306      TCGA-CG-4436      TCGA-CG-4437 
"TUSC3 WILD-TYPE" "TUSC3 WILD-TYPE" "TUSC3 WILD-TYPE" "TUSC3 WILD-TYPE" 
     TCGA-CG-4438      TCGA-CG-4440      TCGA-CG-4441      TCGA-CG-4443 
"TUSC3 WILD-TYPE" "TUSC3 WILD-TYPE" "TUSC3 WILD-TYPE" "TUSC3 WILD-TYPE" 
     TCGA-CG-4444      TCGA-CG-4449      TCGA-CG-4455      TCGA-CG-4460 
"TUSC3 WILD-TYPE" "TUSC3 WILD-TYPE" "TUSC3 WILD-TYPE"   "TUSC3 MUTATED" 
     TCGA-CG-4462      TCGA-CG-4465      TCGA-CG-4466      TCGA-CG-4469 
"TUSC3 WILD-TYPE" "TUSC3 WILD-TYPE" "TUSC3 WILD-TYPE" "TUSC3 WILD-TYPE" 
     TCGA-CG-4472      TCGA-CG-4474      TCGA-CG-4477      TCGA-CG-5716 
"TUSC3 WILD-TYPE" "TUSC3 WILD-TYPE" "TUSC3 WILD-TYPE" "TUSC3 WILD-TYPE" 
     TCGA-CG-5717      TCGA-CG-5718      TCGA-CG-5719      TCGA-CG-5720 
"TUSC3 WILD-TYPE" "TUSC3 WILD-TYPE" "TUSC3 WILD-TYPE" "TUSC3 WILD-TYPE" 
     TCGA-CG-5721      TCGA-CG-5722      TCGA-CG-5723      TCGA-CG-5724 
"TUSC3 WILD-TYPE" "TUSC3 WILD-TYPE" "TUSC3 WILD-TYPE" "TUSC3 WILD-TYPE" 
     TCGA-CG-5725      TCGA-CG-5726      TCGA-CG-5727      TCGA-CG-5728 
"TUSC3 WILD-TYPE" "TUSC3 WILD-TYPE"   "TUSC3 MUTATED" "TUSC3 WILD-TYPE" 
     TCGA-CG-5730      TCGA-CG-5732      TCGA-CG-5733      TCGA-CG-5734 
"TUSC3 WILD-TYPE" "TUSC3 WILD-TYPE" "TUSC3 WILD-TYPE" "TUSC3 WILD-TYPE" 
     TCGA-D7-5577      TCGA-D7-5578      TCGA-D7-5579      TCGA-D7-6518 
"TUSC3 WILD-TYPE" "TUSC3 WILD-TYPE" "TUSC3 WILD-TYPE" "TUSC3 WILD-TYPE" 
     TCGA-D7-6519      TCGA-D7-6520      TCGA-D7-6521      TCGA-D7-6522 
"TUSC3 WILD-TYPE" "TUSC3 WILD-TYPE" "TUSC3 WILD-TYPE" "TUSC3 WILD-TYPE" 
     TCGA-D7-6524      TCGA-D7-6525      TCGA-D7-6526      TCGA-D7-6527 
  "TUSC3 MUTATED" "TUSC3 WILD-TYPE" "TUSC3 WILD-TYPE" "TUSC3 WILD-TYPE" 
     TCGA-D7-6528      TCGA-D7-6815      TCGA-D7-6817      TCGA-D7-6818 
"TUSC3 WILD-TYPE" "TUSC3 WILD-TYPE" "TUSC3 WILD-TYPE"   "TUSC3 MUTATED" 
     TCGA-D7-6820      TCGA-D7-6822      TCGA-EQ-5647      TCGA-F1-6177 
"TUSC3 WILD-TYPE" "TUSC3 WILD-TYPE" "TUSC3 WILD-TYPE" "TUSC3 WILD-TYPE" 
     TCGA-F1-6874 
"TUSC3 WILD-TYPE" 
     TCGA-B7-5816      TCGA-B7-5818      TCGA-BR-6452      TCGA-BR-6455 
"TUSC3 WILD-TYPE" "TUSC3 WILD-TYPE"   "TUSC3 MUTATED" "TUSC3 WILD-TYPE" 
     TCGA-BR-6457      TCGA-BR-6458      TCGA-BR-6564      TCGA-BR-6565 
  "TUSC3 MUTATED" "TUSC3 WILD-TYPE" "TUSC3 WILD-TYPE" "TUSC3 WILD-TYPE" 
     TCGA-BR-6566      TCGA-BR-6705      TCGA-BR-6706      TCGA-BR-6707 
"TUSC3 WILD-TYPE" "TUSC3 WILD-TYPE" "TUSC3 WILD-TYPE" "TUSC3 WILD-TYPE" 
     TCGA-BR-6709      TCGA-BR-6710      TCGA-BR-6801      TCGA-BR-6802 
"TUSC3 WILD-TYPE" "TUSC3 WILD-TYPE" "TUSC3 WILD-TYPE"   "TUSC3 MUTATED" 
     TCGA-BR-6803      TCGA-BR-6852      TCGA-CD-5798      TCGA-CD-5799 
"TUSC3 WILD-TYPE" "TUSC3 WILD-TYPE" "TUSC3 WILD-TYPE" "TUSC3 WILD-TYPE" 
     TCGA-CD-5800      TCGA-CD-5801      TCGA-CD-5802      TCGA-CD-5803 
"TUSC3 WILD-TYPE" "TUSC3 WILD-TYPE" "TUSC3 WILD-TYPE" "TUSC3 WILD-TYPE" 
     TCGA-CD-5813      TCGA-CG-4300      TCGA-CG-4301      TCGA-CG-4304 
"TUSC3 WILD-TYPE" "TUSC3 WILD-TYPE" "TUSC3 WILD-TYPE" "TUSC3 WILD-TYPE" 
     TCGA-CG-4305      TCGA-CG-4306      TCGA-CG-4436      TCGA-CG-4437 
"TUSC3 WILD-TYPE" "TUSC3 WILD-TYPE" "TUSC3 WILD-TYPE" "TUSC3 WILD-TYPE" 
     TCGA-CG-4438      TCGA-CG-4440      TCGA-CG-4441      TCGA-CG-4443 
"TUSC3 WILD-TYPE" "TUSC3 WILD-TYPE" "TUSC3 WILD-TYPE" "TUSC3 WILD-TYPE" 
     TCGA-CG-4444      TCGA-CG-4449      TCGA-CG-4455      TCGA-CG-4460 
"TUSC3 WILD-TYPE" "TUSC3 WILD-TYPE" "TUSC3 WILD-TYPE"   "TUSC3 MUTATED" 
     TCGA-CG-4462      TCGA-CG-4465      TCGA-CG-4466      TCGA-CG-4469 
"TUSC3 WILD-TYPE" "TUSC3 WILD-TYPE" "TUSC3 WILD-TYPE" "TUSC3 WILD-TYPE" 
     TCGA-CG-4472      TCGA-CG-4474      TCGA-CG-4477      TCGA-CG-5716 
"TUSC3 WILD-TYPE" "TUSC3 WILD-TYPE" "TUSC3 WILD-TYPE" "TUSC3 WILD-TYPE" 
     TCGA-CG-5717      TCGA-CG-5718      TCGA-CG-5719      TCGA-CG-5720 
"TUSC3 WILD-TYPE" "TUSC3 WILD-TYPE" "TUSC3 WILD-TYPE" "TUSC3 WILD-TYPE" 
     TCGA-CG-5721      TCGA-CG-5722      TCGA-CG-5723      TCGA-CG-5724 
"TUSC3 WILD-TYPE" "TUSC3 WILD-TYPE" "TUSC3 WILD-TYPE" "TUSC3 WILD-TYPE" 
     TCGA-CG-5725      TCGA-CG-5726      TCGA-CG-5727      TCGA-CG-5728 
"TUSC3 WILD-TYPE" "TUSC3 WILD-TYPE"   "TUSC3 MUTATED" "TUSC3 WILD-TYPE" 
     TCGA-CG-5730      TCGA-CG-5732      TCGA-CG-5733      TCGA-CG-5734 
"TUSC3 WILD-TYPE" "TUSC3 WILD-TYPE" "TUSC3 WILD-TYPE" "TUSC3 WILD-TYPE" 
     TCGA-D7-5577      TCGA-D7-5578      TCGA-D7-5579      TCGA-D7-6518 
"TUSC3 WILD-TYPE" "TUSC3 WILD-TYPE" "TUSC3 WILD-TYPE" "TUSC3 WILD-TYPE" 
     TCGA-D7-6519      TCGA-D7-6520      TCGA-D7-6521      TCGA-D7-6522 
"TUSC3 WILD-TYPE" "TUSC3 WILD-TYPE" "TUSC3 WILD-TYPE" "TUSC3 WILD-TYPE" 
     TCGA-D7-6524      TCGA-D7-6525      TCGA-D7-6526      TCGA-D7-6527 
  "TUSC3 MUTATED" "TUSC3 WILD-TYPE" "TUSC3 WILD-TYPE" "TUSC3 WILD-TYPE" 
     TCGA-D7-6528      TCGA-D7-6815      TCGA-D7-6817      TCGA-D7-6818 
"TUSC3 WILD-TYPE" "TUSC3 WILD-TYPE" "TUSC3 WILD-TYPE"   "TUSC3 MUTATED" 
     TCGA-D7-6820      TCGA-D7-6822      TCGA-EQ-5647      TCGA-F1-6177 
"TUSC3 WILD-TYPE" "TUSC3 WILD-TYPE" "TUSC3 WILD-TYPE" "TUSC3 WILD-TYPE" 
     TCGA-F1-6874 
"TUSC3 WILD-TYPE" 
     TCGA-B7-5816      TCGA-B7-5818      TCGA-BR-6452      TCGA-BR-6455 
"TUSC3 WILD-TYPE" "TUSC3 WILD-TYPE"   "TUSC3 MUTATED" "TUSC3 WILD-TYPE" 
     TCGA-BR-6457      TCGA-BR-6458      TCGA-BR-6564      TCGA-BR-6565 
  "TUSC3 MUTATED" "TUSC3 WILD-TYPE" "TUSC3 WILD-TYPE" "TUSC3 WILD-TYPE" 
     TCGA-BR-6566      TCGA-BR-6705      TCGA-BR-6706      TCGA-BR-6707 
"TUSC3 WILD-TYPE" "TUSC3 WILD-TYPE" "TUSC3 WILD-TYPE" "TUSC3 WILD-TYPE" 
     TCGA-BR-6709      TCGA-BR-6710      TCGA-BR-6801      TCGA-BR-6802 
"TUSC3 WILD-TYPE" "TUSC3 WILD-TYPE" "TUSC3 WILD-TYPE"   "TUSC3 MUTATED" 
     TCGA-BR-6803      TCGA-BR-6852      TCGA-CD-5798      TCGA-CD-5799 
"TUSC3 WILD-TYPE" "TUSC3 WILD-TYPE" "TUSC3 WILD-TYPE" "TUSC3 WILD-TYPE" 
     TCGA-CD-5800      TCGA-CD-5801      TCGA-CD-5802      TCGA-CD-5803 
"TUSC3 WILD-TYPE" "TUSC3 WILD-TYPE" "TUSC3 WILD-TYPE" "TUSC3 WILD-TYPE" 
     TCGA-CD-5813      TCGA-CG-4300      TCGA-CG-4301      TCGA-CG-4304 
"TUSC3 WILD-TYPE" "TUSC3 WILD-TYPE" "TUSC3 WILD-TYPE" "TUSC3 WILD-TYPE" 
     TCGA-CG-4305      TCGA-CG-4306      TCGA-CG-4436      TCGA-CG-4437 
"TUSC3 WILD-TYPE" "TUSC3 WILD-TYPE" "TUSC3 WILD-TYPE" "TUSC3 WILD-TYPE" 
     TCGA-CG-4438      TCGA-CG-4440      TCGA-CG-4441      TCGA-CG-4443 
"TUSC3 WILD-TYPE" "TUSC3 WILD-TYPE" "TUSC3 WILD-TYPE" "TUSC3 WILD-TYPE" 
     TCGA-CG-4444      TCGA-CG-4449      TCGA-CG-4455      TCGA-CG-4460 
"TUSC3 WILD-TYPE" "TUSC3 WILD-TYPE" "TUSC3 WILD-TYPE"   "TUSC3 MUTATED" 
     TCGA-CG-4462      TCGA-CG-4465      TCGA-CG-4466      TCGA-CG-4469 
"TUSC3 WILD-TYPE" "TUSC3 WILD-TYPE" "TUSC3 WILD-TYPE" "TUSC3 WILD-TYPE" 
     TCGA-CG-4472      TCGA-CG-4474      TCGA-CG-4477      TCGA-CG-5716 
"TUSC3 WILD-TYPE" "TUSC3 WILD-TYPE" "TUSC3 WILD-TYPE" "TUSC3 WILD-TYPE" 
     TCGA-CG-5717      TCGA-CG-5718      TCGA-CG-5719      TCGA-CG-5720 
"TUSC3 WILD-TYPE" "TUSC3 WILD-TYPE" "TUSC3 WILD-TYPE" "TUSC3 WILD-TYPE" 
     TCGA-CG-5721      TCGA-CG-5722      TCGA-CG-5723      TCGA-CG-5724 
"TUSC3 WILD-TYPE" "TUSC3 WILD-TYPE" "TUSC3 WILD-TYPE" "TUSC3 WILD-TYPE" 
     TCGA-CG-5725      TCGA-CG-5726      TCGA-CG-5727      TCGA-CG-5728 
"TUSC3 WILD-TYPE" "TUSC3 WILD-TYPE"   "TUSC3 MUTATED" "TUSC3 WILD-TYPE" 
     TCGA-CG-5730      TCGA-CG-5732      TCGA-CG-5733      TCGA-CG-5734 
"TUSC3 WILD-TYPE" "TUSC3 WILD-TYPE" "TUSC3 WILD-TYPE" "TUSC3 WILD-TYPE" 
     TCGA-D7-5577      TCGA-D7-5578      TCGA-D7-5579      TCGA-D7-6518 
"TUSC3 WILD-TYPE" "TUSC3 WILD-TYPE" "TUSC3 WILD-TYPE" "TUSC3 WILD-TYPE" 
     TCGA-D7-6519      TCGA-D7-6520      TCGA-D7-6521      TCGA-D7-6522 
"TUSC3 WILD-TYPE" "TUSC3 WILD-TYPE" "TUSC3 WILD-TYPE" "TUSC3 WILD-TYPE" 
     TCGA-D7-6524      TCGA-D7-6525      TCGA-D7-6526      TCGA-D7-6527 
  "TUSC3 MUTATED" "TUSC3 WILD-TYPE" "TUSC3 WILD-TYPE" "TUSC3 WILD-TYPE" 
     TCGA-D7-6528      TCGA-D7-6815      TCGA-D7-6817      TCGA-D7-6818 
"TUSC3 WILD-TYPE" "TUSC3 WILD-TYPE" "TUSC3 WILD-TYPE"   "TUSC3 MUTATED" 
     TCGA-D7-6820      TCGA-D7-6822      TCGA-EQ-5647      TCGA-F1-6177 
"TUSC3 WILD-TYPE" "TUSC3 WILD-TYPE" "TUSC3 WILD-TYPE" "TUSC3 WILD-TYPE" 
     TCGA-F1-6874 
"TUSC3 WILD-TYPE" 
[1] "hr=" "1.4"
D17V2, continuous
D17V3, binary
[1] "tbl2"
                 cls
clus              [,1] [,2]
  TUSC3 MUTATED      3    6
  TUSC3 WILD-TYPE   43   64
        clus
vv       TUSC3 MUTATED TUSC3 WILD-TYPE
  FEMALE             3              43
  MALE               6              64
D17V4, multiclass
D17V5, multiclass
    clus
vv   TUSC3 MUTATED TUSC3 WILD-TYPE
  T1             0               4
  T2             2              44
  T3             5              36
  T4             2              13
D17V6, multiclass
    clus
vv   TUSC3 MUTATED TUSC3 WILD-TYPE
  N0             4              31
  N1             4              35
  N2             0              19
  N3             1              11
D17V7, multiclass
    clus
vv   TUSC3 MUTATED TUSC3 WILD-TYPE
  M0             7              92
  M1             1              12
  MX             1               3
D17V8, multiclass
     clus
vv    TUSC3 MUTATED TUSC3 WILD-TYPE
  I               0              18
  II              4              28
  III             3              26
  IV              2              19

Clustering(18) Variable = TPTE MUTATION ANALYSIS
D18V1, survival
                sevent
clus2             0  1
  TPTE MUTATED    7  1
  TPTE WILD-TYPE 64 13
  TPTE MUTATED TPTE WILD-TYPE 
             8             77 
  TPTE MUTATED TPTE WILD-TYPE 
             1             13 
$`TPTE MUTATED`
TCGA-B7-5818 TCGA-BR-6458 TCGA-BR-6565 TCGA-CD-5800 TCGA-CG-4465 TCGA-CG-5719 
        0.10         1.35         0.62         0.36         8.98         1.02 
TCGA-CG-5721 TCGA-D7-6527 
        5.98         4.14 

$`TPTE WILD-TYPE`
TCGA-B7-5816 TCGA-BR-6452 TCGA-BR-6455 TCGA-BR-6457 TCGA-BR-6564 TCGA-BR-6566 
        5.62         0.95         1.41         1.35         0.82         0.62 
TCGA-BR-6705 TCGA-BR-6706 TCGA-BR-6707 TCGA-BR-6709 TCGA-BR-6710 TCGA-BR-6801 
        1.71         2.17         0.99         1.22         0.66         1.12 
TCGA-BR-6802 TCGA-BR-6803 TCGA-BR-6852 TCGA-CD-5798 TCGA-CD-5799 TCGA-CD-5801 
        0.76         0.66         0.26         0.82         0.69         0.49 
TCGA-CD-5802 TCGA-CD-5803 TCGA-CD-5813 TCGA-CG-4300 TCGA-CG-4301 TCGA-CG-4304 
        0.30         0.07         0.39        20.02         3.02        27.02 
TCGA-CG-4305 TCGA-CG-4306 TCGA-CG-4436 TCGA-CG-4437 TCGA-CG-4438 TCGA-CG-4440 
       15.95         1.02        52.96         8.05        54.05         4.01 
TCGA-CG-4441 TCGA-CG-4443 TCGA-CG-4444 TCGA-CG-4449 TCGA-CG-4455 TCGA-CG-4460 
       14.01        29.98        47.05        19.07        12.03        21.99 
TCGA-CG-4462 TCGA-CG-4466 TCGA-CG-4469 TCGA-CG-4472 TCGA-CG-4474 TCGA-CG-4477 
        1.02        18.94         7.07        12.00         1.02         1.02 
TCGA-CG-5716 TCGA-CG-5717 TCGA-CG-5718 TCGA-CG-5720 TCGA-CG-5722 TCGA-CG-5723 
        1.02         6.94         1.02         0.99         0.95        70.06 
TCGA-CG-5724 TCGA-CG-5725 TCGA-CG-5726 TCGA-CG-5727 TCGA-CG-5728 TCGA-CG-5730 
       12.03        15.02        28.96        31.04        65.10         4.01 
TCGA-CG-5732 TCGA-CG-5733 TCGA-CG-5734 TCGA-D7-5577 TCGA-D7-5578 TCGA-D7-5579 
       55.04        21.07         7.99         8.65         3.58         4.54 
TCGA-D7-6518 TCGA-D7-6519 TCGA-D7-6520 TCGA-D7-6521 TCGA-D7-6522 TCGA-D7-6524 
        9.80        15.65         9.63         8.19         6.90         0.69 
TCGA-D7-6525 TCGA-D7-6526 TCGA-D7-6528 TCGA-D7-6815 TCGA-D7-6817 TCGA-D7-6818 
        5.95         6.61         1.68         3.65         4.70         4.04 
TCGA-D7-6820 TCGA-D7-6822 TCGA-EQ-5647 TCGA-F1-6177 TCGA-F1-6874 
        2.93         4.27         0.62         6.54         2.01 

  TPTE MUTATED TPTE WILD-TYPE 
          0.10           0.07 
  TPTE MUTATED TPTE WILD-TYPE 
          8.98          70.06 
  TPTE MUTATED TPTE WILD-TYPE 
         1.185          4.040 
[1] "0.1 - 9.0 (1.2)"  "0.1 - 70.1 (4.0)"
    TCGA-B7-5816     TCGA-B7-5818     TCGA-BR-6452     TCGA-BR-6455 
"TPTE WILD-TYPE"   "TPTE MUTATED" "TPTE WILD-TYPE" "TPTE WILD-TYPE" 
    TCGA-BR-6457     TCGA-BR-6458     TCGA-BR-6564     TCGA-BR-6565 
"TPTE WILD-TYPE"   "TPTE MUTATED" "TPTE WILD-TYPE"   "TPTE MUTATED" 
    TCGA-BR-6566     TCGA-BR-6705     TCGA-BR-6706     TCGA-BR-6707 
"TPTE WILD-TYPE" "TPTE WILD-TYPE" "TPTE WILD-TYPE" "TPTE WILD-TYPE" 
    TCGA-BR-6709     TCGA-BR-6710     TCGA-BR-6801     TCGA-BR-6802 
"TPTE WILD-TYPE" "TPTE WILD-TYPE" "TPTE WILD-TYPE" "TPTE WILD-TYPE" 
    TCGA-BR-6803     TCGA-BR-6852     TCGA-CD-5798     TCGA-CD-5799 
"TPTE WILD-TYPE" "TPTE WILD-TYPE" "TPTE WILD-TYPE" "TPTE WILD-TYPE" 
    TCGA-CD-5800     TCGA-CD-5801     TCGA-CD-5802     TCGA-CD-5803 
  "TPTE MUTATED" "TPTE WILD-TYPE" "TPTE WILD-TYPE" "TPTE WILD-TYPE" 
    TCGA-CD-5813     TCGA-CG-4300     TCGA-CG-4301     TCGA-CG-4304 
"TPTE WILD-TYPE" "TPTE WILD-TYPE" "TPTE WILD-TYPE" "TPTE WILD-TYPE" 
    TCGA-CG-4305     TCGA-CG-4306     TCGA-CG-4436     TCGA-CG-4437 
"TPTE WILD-TYPE" "TPTE WILD-TYPE" "TPTE WILD-TYPE" "TPTE WILD-TYPE" 
    TCGA-CG-4438     TCGA-CG-4440     TCGA-CG-4441     TCGA-CG-4443 
"TPTE WILD-TYPE" "TPTE WILD-TYPE" "TPTE WILD-TYPE" "TPTE WILD-TYPE" 
    TCGA-CG-4444     TCGA-CG-4449     TCGA-CG-4455     TCGA-CG-4460 
"TPTE WILD-TYPE" "TPTE WILD-TYPE" "TPTE WILD-TYPE" "TPTE WILD-TYPE" 
    TCGA-CG-4462     TCGA-CG-4465     TCGA-CG-4466     TCGA-CG-4469 
"TPTE WILD-TYPE"   "TPTE MUTATED" "TPTE WILD-TYPE" "TPTE WILD-TYPE" 
    TCGA-CG-4472     TCGA-CG-4474     TCGA-CG-4477     TCGA-CG-5716 
"TPTE WILD-TYPE" "TPTE WILD-TYPE" "TPTE WILD-TYPE" "TPTE WILD-TYPE" 
    TCGA-CG-5717     TCGA-CG-5718     TCGA-CG-5719     TCGA-CG-5720 
"TPTE WILD-TYPE" "TPTE WILD-TYPE"   "TPTE MUTATED" "TPTE WILD-TYPE" 
    TCGA-CG-5721     TCGA-CG-5722     TCGA-CG-5723     TCGA-CG-5724 
  "TPTE MUTATED" "TPTE WILD-TYPE" "TPTE WILD-TYPE" "TPTE WILD-TYPE" 
    TCGA-CG-5725     TCGA-CG-5726     TCGA-CG-5727     TCGA-CG-5728 
"TPTE WILD-TYPE" "TPTE WILD-TYPE" "TPTE WILD-TYPE" "TPTE WILD-TYPE" 
    TCGA-CG-5730     TCGA-CG-5732     TCGA-CG-5733     TCGA-CG-5734 
"TPTE WILD-TYPE" "TPTE WILD-TYPE" "TPTE WILD-TYPE" "TPTE WILD-TYPE" 
    TCGA-D7-5577     TCGA-D7-5578     TCGA-D7-5579     TCGA-D7-6518 
"TPTE WILD-TYPE" "TPTE WILD-TYPE" "TPTE WILD-TYPE" "TPTE WILD-TYPE" 
    TCGA-D7-6519     TCGA-D7-6520     TCGA-D7-6521     TCGA-D7-6522 
"TPTE WILD-TYPE" "TPTE WILD-TYPE" "TPTE WILD-TYPE" "TPTE WILD-TYPE" 
    TCGA-D7-6524     TCGA-D7-6525     TCGA-D7-6526     TCGA-D7-6527 
"TPTE WILD-TYPE" "TPTE WILD-TYPE" "TPTE WILD-TYPE"   "TPTE MUTATED" 
    TCGA-D7-6528     TCGA-D7-6815     TCGA-D7-6817     TCGA-D7-6818 
"TPTE WILD-TYPE" "TPTE WILD-TYPE" "TPTE WILD-TYPE" "TPTE WILD-TYPE" 
    TCGA-D7-6820     TCGA-D7-6822     TCGA-EQ-5647     TCGA-F1-6177 
"TPTE WILD-TYPE" "TPTE WILD-TYPE" "TPTE WILD-TYPE" "TPTE WILD-TYPE" 
    TCGA-F1-6874 
"TPTE WILD-TYPE" 
    TCGA-B7-5816     TCGA-B7-5818     TCGA-BR-6452     TCGA-BR-6455 
"TPTE WILD-TYPE"   "TPTE MUTATED" "TPTE WILD-TYPE" "TPTE WILD-TYPE" 
    TCGA-BR-6457     TCGA-BR-6458     TCGA-BR-6564     TCGA-BR-6565 
"TPTE WILD-TYPE"   "TPTE MUTATED" "TPTE WILD-TYPE"   "TPTE MUTATED" 
    TCGA-BR-6566     TCGA-BR-6705     TCGA-BR-6706     TCGA-BR-6707 
"TPTE WILD-TYPE" "TPTE WILD-TYPE" "TPTE WILD-TYPE" "TPTE WILD-TYPE" 
    TCGA-BR-6709     TCGA-BR-6710     TCGA-BR-6801     TCGA-BR-6802 
"TPTE WILD-TYPE" "TPTE WILD-TYPE" "TPTE WILD-TYPE" "TPTE WILD-TYPE" 
    TCGA-BR-6803     TCGA-BR-6852     TCGA-CD-5798     TCGA-CD-5799 
"TPTE WILD-TYPE" "TPTE WILD-TYPE" "TPTE WILD-TYPE" "TPTE WILD-TYPE" 
    TCGA-CD-5800     TCGA-CD-5801     TCGA-CD-5802     TCGA-CD-5803 
  "TPTE MUTATED" "TPTE WILD-TYPE" "TPTE WILD-TYPE" "TPTE WILD-TYPE" 
    TCGA-CD-5813     TCGA-CG-4300     TCGA-CG-4301     TCGA-CG-4304 
"TPTE WILD-TYPE" "TPTE WILD-TYPE" "TPTE WILD-TYPE" "TPTE WILD-TYPE" 
    TCGA-CG-4305     TCGA-CG-4306     TCGA-CG-4436     TCGA-CG-4437 
"TPTE WILD-TYPE" "TPTE WILD-TYPE" "TPTE WILD-TYPE" "TPTE WILD-TYPE" 
    TCGA-CG-4438     TCGA-CG-4440     TCGA-CG-4441     TCGA-CG-4443 
"TPTE WILD-TYPE" "TPTE WILD-TYPE" "TPTE WILD-TYPE" "TPTE WILD-TYPE" 
    TCGA-CG-4444     TCGA-CG-4449     TCGA-CG-4455     TCGA-CG-4460 
"TPTE WILD-TYPE" "TPTE WILD-TYPE" "TPTE WILD-TYPE" "TPTE WILD-TYPE" 
    TCGA-CG-4462     TCGA-CG-4465     TCGA-CG-4466     TCGA-CG-4469 
"TPTE WILD-TYPE"   "TPTE MUTATED" "TPTE WILD-TYPE" "TPTE WILD-TYPE" 
    TCGA-CG-4472     TCGA-CG-4474     TCGA-CG-4477     TCGA-CG-5716 
"TPTE WILD-TYPE" "TPTE WILD-TYPE" "TPTE WILD-TYPE" "TPTE WILD-TYPE" 
    TCGA-CG-5717     TCGA-CG-5718     TCGA-CG-5719     TCGA-CG-5720 
"TPTE WILD-TYPE" "TPTE WILD-TYPE"   "TPTE MUTATED" "TPTE WILD-TYPE" 
    TCGA-CG-5721     TCGA-CG-5722     TCGA-CG-5723     TCGA-CG-5724 
  "TPTE MUTATED" "TPTE WILD-TYPE" "TPTE WILD-TYPE" "TPTE WILD-TYPE" 
    TCGA-CG-5725     TCGA-CG-5726     TCGA-CG-5727     TCGA-CG-5728 
"TPTE WILD-TYPE" "TPTE WILD-TYPE" "TPTE WILD-TYPE" "TPTE WILD-TYPE" 
    TCGA-CG-5730     TCGA-CG-5732     TCGA-CG-5733     TCGA-CG-5734 
"TPTE WILD-TYPE" "TPTE WILD-TYPE" "TPTE WILD-TYPE" "TPTE WILD-TYPE" 
    TCGA-D7-5577     TCGA-D7-5578     TCGA-D7-5579     TCGA-D7-6518 
"TPTE WILD-TYPE" "TPTE WILD-TYPE" "TPTE WILD-TYPE" "TPTE WILD-TYPE" 
    TCGA-D7-6519     TCGA-D7-6520     TCGA-D7-6521     TCGA-D7-6522 
"TPTE WILD-TYPE" "TPTE WILD-TYPE" "TPTE WILD-TYPE" "TPTE WILD-TYPE" 
    TCGA-D7-6524     TCGA-D7-6525     TCGA-D7-6526     TCGA-D7-6527 
"TPTE WILD-TYPE" "TPTE WILD-TYPE" "TPTE WILD-TYPE"   "TPTE MUTATED" 
    TCGA-D7-6528     TCGA-D7-6815     TCGA-D7-6817     TCGA-D7-6818 
"TPTE WILD-TYPE" "TPTE WILD-TYPE" "TPTE WILD-TYPE" "TPTE WILD-TYPE" 
    TCGA-D7-6820     TCGA-D7-6822     TCGA-EQ-5647     TCGA-F1-6177 
"TPTE WILD-TYPE" "TPTE WILD-TYPE" "TPTE WILD-TYPE" "TPTE WILD-TYPE" 
    TCGA-F1-6874 
"TPTE WILD-TYPE" 
    TCGA-B7-5816     TCGA-B7-5818     TCGA-BR-6452     TCGA-BR-6455 
"TPTE WILD-TYPE"   "TPTE MUTATED" "TPTE WILD-TYPE" "TPTE WILD-TYPE" 
    TCGA-BR-6457     TCGA-BR-6458     TCGA-BR-6564     TCGA-BR-6565 
"TPTE WILD-TYPE"   "TPTE MUTATED" "TPTE WILD-TYPE"   "TPTE MUTATED" 
    TCGA-BR-6566     TCGA-BR-6705     TCGA-BR-6706     TCGA-BR-6707 
"TPTE WILD-TYPE" "TPTE WILD-TYPE" "TPTE WILD-TYPE" "TPTE WILD-TYPE" 
    TCGA-BR-6709     TCGA-BR-6710     TCGA-BR-6801     TCGA-BR-6802 
"TPTE WILD-TYPE" "TPTE WILD-TYPE" "TPTE WILD-TYPE" "TPTE WILD-TYPE" 
    TCGA-BR-6803     TCGA-BR-6852     TCGA-CD-5798     TCGA-CD-5799 
"TPTE WILD-TYPE" "TPTE WILD-TYPE" "TPTE WILD-TYPE" "TPTE WILD-TYPE" 
    TCGA-CD-5800     TCGA-CD-5801     TCGA-CD-5802     TCGA-CD-5803 
  "TPTE MUTATED" "TPTE WILD-TYPE" "TPTE WILD-TYPE" "TPTE WILD-TYPE" 
    TCGA-CD-5813     TCGA-CG-4300     TCGA-CG-4301     TCGA-CG-4304 
"TPTE WILD-TYPE" "TPTE WILD-TYPE" "TPTE WILD-TYPE" "TPTE WILD-TYPE" 
    TCGA-CG-4305     TCGA-CG-4306     TCGA-CG-4436     TCGA-CG-4437 
"TPTE WILD-TYPE" "TPTE WILD-TYPE" "TPTE WILD-TYPE" "TPTE WILD-TYPE" 
    TCGA-CG-4438     TCGA-CG-4440     TCGA-CG-4441     TCGA-CG-4443 
"TPTE WILD-TYPE" "TPTE WILD-TYPE" "TPTE WILD-TYPE" "TPTE WILD-TYPE" 
    TCGA-CG-4444     TCGA-CG-4449     TCGA-CG-4455     TCGA-CG-4460 
"TPTE WILD-TYPE" "TPTE WILD-TYPE" "TPTE WILD-TYPE" "TPTE WILD-TYPE" 
    TCGA-CG-4462     TCGA-CG-4465     TCGA-CG-4466     TCGA-CG-4469 
"TPTE WILD-TYPE"   "TPTE MUTATED" "TPTE WILD-TYPE" "TPTE WILD-TYPE" 
    TCGA-CG-4472     TCGA-CG-4474     TCGA-CG-4477     TCGA-CG-5716 
"TPTE WILD-TYPE" "TPTE WILD-TYPE" "TPTE WILD-TYPE" "TPTE WILD-TYPE" 
    TCGA-CG-5717     TCGA-CG-5718     TCGA-CG-5719     TCGA-CG-5720 
"TPTE WILD-TYPE" "TPTE WILD-TYPE"   "TPTE MUTATED" "TPTE WILD-TYPE" 
    TCGA-CG-5721     TCGA-CG-5722     TCGA-CG-5723     TCGA-CG-5724 
  "TPTE MUTATED" "TPTE WILD-TYPE" "TPTE WILD-TYPE" "TPTE WILD-TYPE" 
    TCGA-CG-5725     TCGA-CG-5726     TCGA-CG-5727     TCGA-CG-5728 
"TPTE WILD-TYPE" "TPTE WILD-TYPE" "TPTE WILD-TYPE" "TPTE WILD-TYPE" 
    TCGA-CG-5730     TCGA-CG-5732     TCGA-CG-5733     TCGA-CG-5734 
"TPTE WILD-TYPE" "TPTE WILD-TYPE" "TPTE WILD-TYPE" "TPTE WILD-TYPE" 
    TCGA-D7-5577     TCGA-D7-5578     TCGA-D7-5579     TCGA-D7-6518 
"TPTE WILD-TYPE" "TPTE WILD-TYPE" "TPTE WILD-TYPE" "TPTE WILD-TYPE" 
    TCGA-D7-6519     TCGA-D7-6520     TCGA-D7-6521     TCGA-D7-6522 
"TPTE WILD-TYPE" "TPTE WILD-TYPE" "TPTE WILD-TYPE" "TPTE WILD-TYPE" 
    TCGA-D7-6524     TCGA-D7-6525     TCGA-D7-6526     TCGA-D7-6527 
"TPTE WILD-TYPE" "TPTE WILD-TYPE" "TPTE WILD-TYPE"   "TPTE MUTATED" 
    TCGA-D7-6528     TCGA-D7-6815     TCGA-D7-6817     TCGA-D7-6818 
"TPTE WILD-TYPE" "TPTE WILD-TYPE" "TPTE WILD-TYPE" "TPTE WILD-TYPE" 
    TCGA-D7-6820     TCGA-D7-6822     TCGA-EQ-5647     TCGA-F1-6177 
"TPTE WILD-TYPE" "TPTE WILD-TYPE" "TPTE WILD-TYPE" "TPTE WILD-TYPE" 
    TCGA-F1-6874 
"TPTE WILD-TYPE" 
[1] "hr=" "2.5"
D18V2, continuous
D18V3, binary
[1] "tbl2"
                cls
clus             [,1] [,2]
  TPTE MUTATED      7    7
  TPTE WILD-TYPE   39   63
        clus
vv       TPTE MUTATED TPTE WILD-TYPE
  FEMALE            7             39
  MALE              7             63
D18V4, multiclass
D18V5, multiclass
    clus
vv   TPTE MUTATED TPTE WILD-TYPE
  T1            0              4
  T2            4             42
  T3            4             37
  T4            4             11
D18V6, multiclass
    clus
vv   TPTE MUTATED TPTE WILD-TYPE
  N0            6             29
  N1            5             34
  N2            0             19
  N3            1             11
D18V7, multiclass
    clus
vv   TPTE MUTATED TPTE WILD-TYPE
  M0           11             88
  M1            2             11
  MX            1              3
D18V8, multiclass
     clus
vv    TPTE MUTATED TPTE WILD-TYPE
  I              2             16
  II             4             28
  III            3             26
  IV             3             18

Clustering(19) Variable = C17ORF63 MUTATION ANALYSIS
D19V1, survival
                    sevent
clus2                 0  1
  C17ORF63 MUTATED    2  0
  C17ORF63 WILD-TYPE 69 14
  C17ORF63 MUTATED C17ORF63 WILD-TYPE 
                 2                 83 
  C17ORF63 MUTATED C17ORF63 WILD-TYPE 
                 0                 14 
$`C17ORF63 MUTATED`
TCGA-B7-5816 TCGA-CG-4436 
        5.62        52.96 

$`C17ORF63 WILD-TYPE`
TCGA-B7-5818 TCGA-BR-6452 TCGA-BR-6455 TCGA-BR-6457 TCGA-BR-6458 TCGA-BR-6564 
        0.10         0.95         1.41         1.35         1.35         0.82 
TCGA-BR-6565 TCGA-BR-6566 TCGA-BR-6705 TCGA-BR-6706 TCGA-BR-6707 TCGA-BR-6709 
        0.62         0.62         1.71         2.17         0.99         1.22 
TCGA-BR-6710 TCGA-BR-6801 TCGA-BR-6802 TCGA-BR-6803 TCGA-BR-6852 TCGA-CD-5798 
        0.66         1.12         0.76         0.66         0.26         0.82 
TCGA-CD-5799 TCGA-CD-5800 TCGA-CD-5801 TCGA-CD-5802 TCGA-CD-5803 TCGA-CD-5813 
        0.69         0.36         0.49         0.30         0.07         0.39 
TCGA-CG-4300 TCGA-CG-4301 TCGA-CG-4304 TCGA-CG-4305 TCGA-CG-4306 TCGA-CG-4437 
       20.02         3.02        27.02        15.95         1.02         8.05 
TCGA-CG-4438 TCGA-CG-4440 TCGA-CG-4441 TCGA-CG-4443 TCGA-CG-4444 TCGA-CG-4449 
       54.05         4.01        14.01        29.98        47.05        19.07 
TCGA-CG-4455 TCGA-CG-4460 TCGA-CG-4462 TCGA-CG-4465 TCGA-CG-4466 TCGA-CG-4469 
       12.03        21.99         1.02         8.98        18.94         7.07 
TCGA-CG-4472 TCGA-CG-4474 TCGA-CG-4477 TCGA-CG-5716 TCGA-CG-5717 TCGA-CG-5718 
       12.00         1.02         1.02         1.02         6.94         1.02 
TCGA-CG-5719 TCGA-CG-5720 TCGA-CG-5721 TCGA-CG-5722 TCGA-CG-5723 TCGA-CG-5724 
        1.02         0.99         5.98         0.95        70.06        12.03 
TCGA-CG-5725 TCGA-CG-5726 TCGA-CG-5727 TCGA-CG-5728 TCGA-CG-5730 TCGA-CG-5732 
       15.02        28.96        31.04        65.10         4.01        55.04 
TCGA-CG-5733 TCGA-CG-5734 TCGA-D7-5577 TCGA-D7-5578 TCGA-D7-5579 TCGA-D7-6518 
       21.07         7.99         8.65         3.58         4.54         9.80 
TCGA-D7-6519 TCGA-D7-6520 TCGA-D7-6521 TCGA-D7-6522 TCGA-D7-6524 TCGA-D7-6525 
       15.65         9.63         8.19         6.90         0.69         5.95 
TCGA-D7-6526 TCGA-D7-6527 TCGA-D7-6528 TCGA-D7-6815 TCGA-D7-6817 TCGA-D7-6818 
        6.61         4.14         1.68         3.65         4.70         4.04 
TCGA-D7-6820 TCGA-D7-6822 TCGA-EQ-5647 TCGA-F1-6177 TCGA-F1-6874 
        2.93         4.27         0.62         6.54         2.01 

  C17ORF63 MUTATED C17ORF63 WILD-TYPE 
              5.62               0.07 
  C17ORF63 MUTATED C17ORF63 WILD-TYPE 
             52.96              70.06 
  C17ORF63 MUTATED C17ORF63 WILD-TYPE 
             29.29               4.01 
[1] "5.6 - 53.0 (29.3)" "0.1 - 70.1 (4.0)" 
        TCGA-B7-5816         TCGA-B7-5818         TCGA-BR-6452 
  "C17ORF63 MUTATED" "C17ORF63 WILD-TYPE" "C17ORF63 WILD-TYPE" 
        TCGA-BR-6455         TCGA-BR-6457         TCGA-BR-6458 
"C17ORF63 WILD-TYPE" "C17ORF63 WILD-TYPE" "C17ORF63 WILD-TYPE" 
        TCGA-BR-6564         TCGA-BR-6565         TCGA-BR-6566 
"C17ORF63 WILD-TYPE" "C17ORF63 WILD-TYPE" "C17ORF63 WILD-TYPE" 
        TCGA-BR-6705         TCGA-BR-6706         TCGA-BR-6707 
"C17ORF63 WILD-TYPE" "C17ORF63 WILD-TYPE" "C17ORF63 WILD-TYPE" 
        TCGA-BR-6709         TCGA-BR-6710         TCGA-BR-6801 
"C17ORF63 WILD-TYPE" "C17ORF63 WILD-TYPE" "C17ORF63 WILD-TYPE" 
        TCGA-BR-6802         TCGA-BR-6803         TCGA-BR-6852 
"C17ORF63 WILD-TYPE" "C17ORF63 WILD-TYPE" "C17ORF63 WILD-TYPE" 
        TCGA-CD-5798         TCGA-CD-5799         TCGA-CD-5800 
"C17ORF63 WILD-TYPE" "C17ORF63 WILD-TYPE" "C17ORF63 WILD-TYPE" 
        TCGA-CD-5801         TCGA-CD-5802         TCGA-CD-5803 
"C17ORF63 WILD-TYPE" "C17ORF63 WILD-TYPE" "C17ORF63 WILD-TYPE" 
        TCGA-CD-5813         TCGA-CG-4300         TCGA-CG-4301 
"C17ORF63 WILD-TYPE" "C17ORF63 WILD-TYPE" "C17ORF63 WILD-TYPE" 
        TCGA-CG-4304         TCGA-CG-4305         TCGA-CG-4306 
"C17ORF63 WILD-TYPE" "C17ORF63 WILD-TYPE" "C17ORF63 WILD-TYPE" 
        TCGA-CG-4436         TCGA-CG-4437         TCGA-CG-4438 
  "C17ORF63 MUTATED" "C17ORF63 WILD-TYPE" "C17ORF63 WILD-TYPE" 
        TCGA-CG-4440         TCGA-CG-4441         TCGA-CG-4443 
"C17ORF63 WILD-TYPE" "C17ORF63 WILD-TYPE" "C17ORF63 WILD-TYPE" 
        TCGA-CG-4444         TCGA-CG-4449         TCGA-CG-4455 
"C17ORF63 WILD-TYPE" "C17ORF63 WILD-TYPE" "C17ORF63 WILD-TYPE" 
        TCGA-CG-4460         TCGA-CG-4462         TCGA-CG-4465 
"C17ORF63 WILD-TYPE" "C17ORF63 WILD-TYPE" "C17ORF63 WILD-TYPE" 
        TCGA-CG-4466         TCGA-CG-4469         TCGA-CG-4472 
"C17ORF63 WILD-TYPE" "C17ORF63 WILD-TYPE" "C17ORF63 WILD-TYPE" 
        TCGA-CG-4474         TCGA-CG-4477         TCGA-CG-5716 
"C17ORF63 WILD-TYPE" "C17ORF63 WILD-TYPE" "C17ORF63 WILD-TYPE" 
        TCGA-CG-5717         TCGA-CG-5718         TCGA-CG-5719 
"C17ORF63 WILD-TYPE" "C17ORF63 WILD-TYPE" "C17ORF63 WILD-TYPE" 
        TCGA-CG-5720         TCGA-CG-5721         TCGA-CG-5722 
"C17ORF63 WILD-TYPE" "C17ORF63 WILD-TYPE" "C17ORF63 WILD-TYPE" 
        TCGA-CG-5723         TCGA-CG-5724         TCGA-CG-5725 
"C17ORF63 WILD-TYPE" "C17ORF63 WILD-TYPE" "C17ORF63 WILD-TYPE" 
        TCGA-CG-5726         TCGA-CG-5727         TCGA-CG-5728 
"C17ORF63 WILD-TYPE" "C17ORF63 WILD-TYPE" "C17ORF63 WILD-TYPE" 
        TCGA-CG-5730         TCGA-CG-5732         TCGA-CG-5733 
"C17ORF63 WILD-TYPE" "C17ORF63 WILD-TYPE" "C17ORF63 WILD-TYPE" 
        TCGA-CG-5734         TCGA-D7-5577         TCGA-D7-5578 
"C17ORF63 WILD-TYPE" "C17ORF63 WILD-TYPE" "C17ORF63 WILD-TYPE" 
        TCGA-D7-5579         TCGA-D7-6518         TCGA-D7-6519 
"C17ORF63 WILD-TYPE" "C17ORF63 WILD-TYPE" "C17ORF63 WILD-TYPE" 
        TCGA-D7-6520         TCGA-D7-6521         TCGA-D7-6522 
"C17ORF63 WILD-TYPE" "C17ORF63 WILD-TYPE" "C17ORF63 WILD-TYPE" 
        TCGA-D7-6524         TCGA-D7-6525         TCGA-D7-6526 
"C17ORF63 WILD-TYPE" "C17ORF63 WILD-TYPE" "C17ORF63 WILD-TYPE" 
        TCGA-D7-6527         TCGA-D7-6528         TCGA-D7-6815 
"C17ORF63 WILD-TYPE" "C17ORF63 WILD-TYPE" "C17ORF63 WILD-TYPE" 
        TCGA-D7-6817         TCGA-D7-6818         TCGA-D7-6820 
"C17ORF63 WILD-TYPE" "C17ORF63 WILD-TYPE" "C17ORF63 WILD-TYPE" 
        TCGA-D7-6822         TCGA-EQ-5647         TCGA-F1-6177 
"C17ORF63 WILD-TYPE" "C17ORF63 WILD-TYPE" "C17ORF63 WILD-TYPE" 
        TCGA-F1-6874 
"C17ORF63 WILD-TYPE" 
        TCGA-B7-5816         TCGA-B7-5818         TCGA-BR-6452 
  "C17ORF63 MUTATED" "C17ORF63 WILD-TYPE" "C17ORF63 WILD-TYPE" 
        TCGA-BR-6455         TCGA-BR-6457         TCGA-BR-6458 
"C17ORF63 WILD-TYPE" "C17ORF63 WILD-TYPE" "C17ORF63 WILD-TYPE" 
        TCGA-BR-6564         TCGA-BR-6565         TCGA-BR-6566 
"C17ORF63 WILD-TYPE" "C17ORF63 WILD-TYPE" "C17ORF63 WILD-TYPE" 
        TCGA-BR-6705         TCGA-BR-6706         TCGA-BR-6707 
"C17ORF63 WILD-TYPE" "C17ORF63 WILD-TYPE" "C17ORF63 WILD-TYPE" 
        TCGA-BR-6709         TCGA-BR-6710         TCGA-BR-6801 
"C17ORF63 WILD-TYPE" "C17ORF63 WILD-TYPE" "C17ORF63 WILD-TYPE" 
        TCGA-BR-6802         TCGA-BR-6803         TCGA-BR-6852 
"C17ORF63 WILD-TYPE" "C17ORF63 WILD-TYPE" "C17ORF63 WILD-TYPE" 
        TCGA-CD-5798         TCGA-CD-5799         TCGA-CD-5800 
"C17ORF63 WILD-TYPE" "C17ORF63 WILD-TYPE" "C17ORF63 WILD-TYPE" 
        TCGA-CD-5801         TCGA-CD-5802         TCGA-CD-5803 
"C17ORF63 WILD-TYPE" "C17ORF63 WILD-TYPE" "C17ORF63 WILD-TYPE" 
        TCGA-CD-5813         TCGA-CG-4300         TCGA-CG-4301 
"C17ORF63 WILD-TYPE" "C17ORF63 WILD-TYPE" "C17ORF63 WILD-TYPE" 
        TCGA-CG-4304         TCGA-CG-4305         TCGA-CG-4306 
"C17ORF63 WILD-TYPE" "C17ORF63 WILD-TYPE" "C17ORF63 WILD-TYPE" 
        TCGA-CG-4436         TCGA-CG-4437         TCGA-CG-4438 
  "C17ORF63 MUTATED" "C17ORF63 WILD-TYPE" "C17ORF63 WILD-TYPE" 
        TCGA-CG-4440         TCGA-CG-4441         TCGA-CG-4443 
"C17ORF63 WILD-TYPE" "C17ORF63 WILD-TYPE" "C17ORF63 WILD-TYPE" 
        TCGA-CG-4444         TCGA-CG-4449         TCGA-CG-4455 
"C17ORF63 WILD-TYPE" "C17ORF63 WILD-TYPE" "C17ORF63 WILD-TYPE" 
        TCGA-CG-4460         TCGA-CG-4462         TCGA-CG-4465 
"C17ORF63 WILD-TYPE" "C17ORF63 WILD-TYPE" "C17ORF63 WILD-TYPE" 
        TCGA-CG-4466         TCGA-CG-4469         TCGA-CG-4472 
"C17ORF63 WILD-TYPE" "C17ORF63 WILD-TYPE" "C17ORF63 WILD-TYPE" 
        TCGA-CG-4474         TCGA-CG-4477         TCGA-CG-5716 
"C17ORF63 WILD-TYPE" "C17ORF63 WILD-TYPE" "C17ORF63 WILD-TYPE" 
        TCGA-CG-5717         TCGA-CG-5718         TCGA-CG-5719 
"C17ORF63 WILD-TYPE" "C17ORF63 WILD-TYPE" "C17ORF63 WILD-TYPE" 
        TCGA-CG-5720         TCGA-CG-5721         TCGA-CG-5722 
"C17ORF63 WILD-TYPE" "C17ORF63 WILD-TYPE" "C17ORF63 WILD-TYPE" 
        TCGA-CG-5723         TCGA-CG-5724         TCGA-CG-5725 
"C17ORF63 WILD-TYPE" "C17ORF63 WILD-TYPE" "C17ORF63 WILD-TYPE" 
        TCGA-CG-5726         TCGA-CG-5727         TCGA-CG-5728 
"C17ORF63 WILD-TYPE" "C17ORF63 WILD-TYPE" "C17ORF63 WILD-TYPE" 
        TCGA-CG-5730         TCGA-CG-5732         TCGA-CG-5733 
"C17ORF63 WILD-TYPE" "C17ORF63 WILD-TYPE" "C17ORF63 WILD-TYPE" 
        TCGA-CG-5734         TCGA-D7-5577         TCGA-D7-5578 
"C17ORF63 WILD-TYPE" "C17ORF63 WILD-TYPE" "C17ORF63 WILD-TYPE" 
        TCGA-D7-5579         TCGA-D7-6518         TCGA-D7-6519 
"C17ORF63 WILD-TYPE" "C17ORF63 WILD-TYPE" "C17ORF63 WILD-TYPE" 
        TCGA-D7-6520         TCGA-D7-6521         TCGA-D7-6522 
"C17ORF63 WILD-TYPE" "C17ORF63 WILD-TYPE" "C17ORF63 WILD-TYPE" 
        TCGA-D7-6524         TCGA-D7-6525         TCGA-D7-6526 
"C17ORF63 WILD-TYPE" "C17ORF63 WILD-TYPE" "C17ORF63 WILD-TYPE" 
        TCGA-D7-6527         TCGA-D7-6528         TCGA-D7-6815 
"C17ORF63 WILD-TYPE" "C17ORF63 WILD-TYPE" "C17ORF63 WILD-TYPE" 
        TCGA-D7-6817         TCGA-D7-6818         TCGA-D7-6820 
"C17ORF63 WILD-TYPE" "C17ORF63 WILD-TYPE" "C17ORF63 WILD-TYPE" 
        TCGA-D7-6822         TCGA-EQ-5647         TCGA-F1-6177 
"C17ORF63 WILD-TYPE" "C17ORF63 WILD-TYPE" "C17ORF63 WILD-TYPE" 
        TCGA-F1-6874 
"C17ORF63 WILD-TYPE" 
        TCGA-B7-5816         TCGA-B7-5818         TCGA-BR-6452 
  "C17ORF63 MUTATED" "C17ORF63 WILD-TYPE" "C17ORF63 WILD-TYPE" 
        TCGA-BR-6455         TCGA-BR-6457         TCGA-BR-6458 
"C17ORF63 WILD-TYPE" "C17ORF63 WILD-TYPE" "C17ORF63 WILD-TYPE" 
        TCGA-BR-6564         TCGA-BR-6565         TCGA-BR-6566 
"C17ORF63 WILD-TYPE" "C17ORF63 WILD-TYPE" "C17ORF63 WILD-TYPE" 
        TCGA-BR-6705         TCGA-BR-6706         TCGA-BR-6707 
"C17ORF63 WILD-TYPE" "C17ORF63 WILD-TYPE" "C17ORF63 WILD-TYPE" 
        TCGA-BR-6709         TCGA-BR-6710         TCGA-BR-6801 
"C17ORF63 WILD-TYPE" "C17ORF63 WILD-TYPE" "C17ORF63 WILD-TYPE" 
        TCGA-BR-6802         TCGA-BR-6803         TCGA-BR-6852 
"C17ORF63 WILD-TYPE" "C17ORF63 WILD-TYPE" "C17ORF63 WILD-TYPE" 
        TCGA-CD-5798         TCGA-CD-5799         TCGA-CD-5800 
"C17ORF63 WILD-TYPE" "C17ORF63 WILD-TYPE" "C17ORF63 WILD-TYPE" 
        TCGA-CD-5801         TCGA-CD-5802         TCGA-CD-5803 
"C17ORF63 WILD-TYPE" "C17ORF63 WILD-TYPE" "C17ORF63 WILD-TYPE" 
        TCGA-CD-5813         TCGA-CG-4300         TCGA-CG-4301 
"C17ORF63 WILD-TYPE" "C17ORF63 WILD-TYPE" "C17ORF63 WILD-TYPE" 
        TCGA-CG-4304         TCGA-CG-4305         TCGA-CG-4306 
"C17ORF63 WILD-TYPE" "C17ORF63 WILD-TYPE" "C17ORF63 WILD-TYPE" 
        TCGA-CG-4436         TCGA-CG-4437         TCGA-CG-4438 
  "C17ORF63 MUTATED" "C17ORF63 WILD-TYPE" "C17ORF63 WILD-TYPE" 
        TCGA-CG-4440         TCGA-CG-4441         TCGA-CG-4443 
"C17ORF63 WILD-TYPE" "C17ORF63 WILD-TYPE" "C17ORF63 WILD-TYPE" 
        TCGA-CG-4444         TCGA-CG-4449         TCGA-CG-4455 
"C17ORF63 WILD-TYPE" "C17ORF63 WILD-TYPE" "C17ORF63 WILD-TYPE" 
        TCGA-CG-4460         TCGA-CG-4462         TCGA-CG-4465 
"C17ORF63 WILD-TYPE" "C17ORF63 WILD-TYPE" "C17ORF63 WILD-TYPE" 
        TCGA-CG-4466         TCGA-CG-4469         TCGA-CG-4472 
"C17ORF63 WILD-TYPE" "C17ORF63 WILD-TYPE" "C17ORF63 WILD-TYPE" 
        TCGA-CG-4474         TCGA-CG-4477         TCGA-CG-5716 
"C17ORF63 WILD-TYPE" "C17ORF63 WILD-TYPE" "C17ORF63 WILD-TYPE" 
        TCGA-CG-5717         TCGA-CG-5718         TCGA-CG-5719 
"C17ORF63 WILD-TYPE" "C17ORF63 WILD-TYPE" "C17ORF63 WILD-TYPE" 
        TCGA-CG-5720         TCGA-CG-5721         TCGA-CG-5722 
"C17ORF63 WILD-TYPE" "C17ORF63 WILD-TYPE" "C17ORF63 WILD-TYPE" 
        TCGA-CG-5723         TCGA-CG-5724         TCGA-CG-5725 
"C17ORF63 WILD-TYPE" "C17ORF63 WILD-TYPE" "C17ORF63 WILD-TYPE" 
        TCGA-CG-5726         TCGA-CG-5727         TCGA-CG-5728 
"C17ORF63 WILD-TYPE" "C17ORF63 WILD-TYPE" "C17ORF63 WILD-TYPE" 
        TCGA-CG-5730         TCGA-CG-5732         TCGA-CG-5733 
"C17ORF63 WILD-TYPE" "C17ORF63 WILD-TYPE" "C17ORF63 WILD-TYPE" 
        TCGA-CG-5734         TCGA-D7-5577         TCGA-D7-5578 
"C17ORF63 WILD-TYPE" "C17ORF63 WILD-TYPE" "C17ORF63 WILD-TYPE" 
        TCGA-D7-5579         TCGA-D7-6518         TCGA-D7-6519 
"C17ORF63 WILD-TYPE" "C17ORF63 WILD-TYPE" "C17ORF63 WILD-TYPE" 
        TCGA-D7-6520         TCGA-D7-6521         TCGA-D7-6522 
"C17ORF63 WILD-TYPE" "C17ORF63 WILD-TYPE" "C17ORF63 WILD-TYPE" 
        TCGA-D7-6524         TCGA-D7-6525         TCGA-D7-6526 
"C17ORF63 WILD-TYPE" "C17ORF63 WILD-TYPE" "C17ORF63 WILD-TYPE" 
        TCGA-D7-6527         TCGA-D7-6528         TCGA-D7-6815 
"C17ORF63 WILD-TYPE" "C17ORF63 WILD-TYPE" "C17ORF63 WILD-TYPE" 
        TCGA-D7-6817         TCGA-D7-6818         TCGA-D7-6820 
"C17ORF63 WILD-TYPE" "C17ORF63 WILD-TYPE" "C17ORF63 WILD-TYPE" 
        TCGA-D7-6822         TCGA-EQ-5647         TCGA-F1-6177 
"C17ORF63 WILD-TYPE" "C17ORF63 WILD-TYPE" "C17ORF63 WILD-TYPE" 
        TCGA-F1-6874 
"C17ORF63 WILD-TYPE" 
[1] "Remove cluster labels:" "C17ORF63 MUTATED"      
clus
  C17ORF63 MUTATED C17ORF63 WILD-TYPE 
                 2                 83 
        TCGA-B7-5818         TCGA-BR-6452         TCGA-BR-6455 
"C17ORF63 WILD-TYPE" "C17ORF63 WILD-TYPE" "C17ORF63 WILD-TYPE" 
        TCGA-BR-6457         TCGA-BR-6458         TCGA-BR-6564 
"C17ORF63 WILD-TYPE" "C17ORF63 WILD-TYPE" "C17ORF63 WILD-TYPE" 
        TCGA-BR-6565         TCGA-BR-6566         TCGA-BR-6705 
"C17ORF63 WILD-TYPE" "C17ORF63 WILD-TYPE" "C17ORF63 WILD-TYPE" 
        TCGA-BR-6706         TCGA-BR-6707         TCGA-BR-6709 
"C17ORF63 WILD-TYPE" "C17ORF63 WILD-TYPE" "C17ORF63 WILD-TYPE" 
        TCGA-BR-6710         TCGA-BR-6801         TCGA-BR-6802 
"C17ORF63 WILD-TYPE" "C17ORF63 WILD-TYPE" "C17ORF63 WILD-TYPE" 
        TCGA-BR-6803         TCGA-BR-6852         TCGA-CD-5798 
"C17ORF63 WILD-TYPE" "C17ORF63 WILD-TYPE" "C17ORF63 WILD-TYPE" 
        TCGA-CD-5799         TCGA-CD-5800         TCGA-CD-5801 
"C17ORF63 WILD-TYPE" "C17ORF63 WILD-TYPE" "C17ORF63 WILD-TYPE" 
        TCGA-CD-5802         TCGA-CD-5803         TCGA-CD-5813 
"C17ORF63 WILD-TYPE" "C17ORF63 WILD-TYPE" "C17ORF63 WILD-TYPE" 
        TCGA-CG-4300         TCGA-CG-4301         TCGA-CG-4304 
"C17ORF63 WILD-TYPE" "C17ORF63 WILD-TYPE" "C17ORF63 WILD-TYPE" 
        TCGA-CG-4305         TCGA-CG-4306         TCGA-CG-4437 
"C17ORF63 WILD-TYPE" "C17ORF63 WILD-TYPE" "C17ORF63 WILD-TYPE" 
        TCGA-CG-4438         TCGA-CG-4440         TCGA-CG-4441 
"C17ORF63 WILD-TYPE" "C17ORF63 WILD-TYPE" "C17ORF63 WILD-TYPE" 
        TCGA-CG-4443         TCGA-CG-4444         TCGA-CG-4449 
"C17ORF63 WILD-TYPE" "C17ORF63 WILD-TYPE" "C17ORF63 WILD-TYPE" 
        TCGA-CG-4455         TCGA-CG-4460         TCGA-CG-4462 
"C17ORF63 WILD-TYPE" "C17ORF63 WILD-TYPE" "C17ORF63 WILD-TYPE" 
        TCGA-CG-4465         TCGA-CG-4466         TCGA-CG-4469 
"C17ORF63 WILD-TYPE" "C17ORF63 WILD-TYPE" "C17ORF63 WILD-TYPE" 
        TCGA-CG-4472         TCGA-CG-4474         TCGA-CG-4477 
"C17ORF63 WILD-TYPE" "C17ORF63 WILD-TYPE" "C17ORF63 WILD-TYPE" 
        TCGA-CG-5716         TCGA-CG-5717         TCGA-CG-5718 
"C17ORF63 WILD-TYPE" "C17ORF63 WILD-TYPE" "C17ORF63 WILD-TYPE" 
        TCGA-CG-5719         TCGA-CG-5720         TCGA-CG-5721 
"C17ORF63 WILD-TYPE" "C17ORF63 WILD-TYPE" "C17ORF63 WILD-TYPE" 
        TCGA-CG-5722         TCGA-CG-5723         TCGA-CG-5724 
"C17ORF63 WILD-TYPE" "C17ORF63 WILD-TYPE" "C17ORF63 WILD-TYPE" 
        TCGA-CG-5725         TCGA-CG-5726         TCGA-CG-5727 
"C17ORF63 WILD-TYPE" "C17ORF63 WILD-TYPE" "C17ORF63 WILD-TYPE" 
        TCGA-CG-5728         TCGA-CG-5730         TCGA-CG-5732 
"C17ORF63 WILD-TYPE" "C17ORF63 WILD-TYPE" "C17ORF63 WILD-TYPE" 
        TCGA-CG-5733         TCGA-CG-5734         TCGA-D7-5577 
"C17ORF63 WILD-TYPE" "C17ORF63 WILD-TYPE" "C17ORF63 WILD-TYPE" 
        TCGA-D7-5578         TCGA-D7-5579         TCGA-D7-6518 
"C17ORF63 WILD-TYPE" "C17ORF63 WILD-TYPE" "C17ORF63 WILD-TYPE" 
        TCGA-D7-6519         TCGA-D7-6520         TCGA-D7-6521 
"C17ORF63 WILD-TYPE" "C17ORF63 WILD-TYPE" "C17ORF63 WILD-TYPE" 
        TCGA-D7-6522         TCGA-D7-6524         TCGA-D7-6525 
"C17ORF63 WILD-TYPE" "C17ORF63 WILD-TYPE" "C17ORF63 WILD-TYPE" 
        TCGA-D7-6526         TCGA-D7-6527         TCGA-D7-6528 
"C17ORF63 WILD-TYPE" "C17ORF63 WILD-TYPE" "C17ORF63 WILD-TYPE" 
        TCGA-D7-6815         TCGA-D7-6817         TCGA-D7-6818 
"C17ORF63 WILD-TYPE" "C17ORF63 WILD-TYPE" "C17ORF63 WILD-TYPE" 
        TCGA-D7-6820         TCGA-D7-6822         TCGA-EQ-5647 
"C17ORF63 WILD-TYPE" "C17ORF63 WILD-TYPE" "C17ORF63 WILD-TYPE" 
        TCGA-F1-6177         TCGA-F1-6874 
"C17ORF63 WILD-TYPE" "C17ORF63 WILD-TYPE" 
D19V2, continuous
D19V3, binary
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  C17ORF63 MUTATED      2    1
  C17ORF63 WILD-TYPE   44   69
        clus
vv       C17ORF63 MUTATED C17ORF63 WILD-TYPE
  FEMALE                2                 44
  MALE                  1                 69
D19V4, multiclass
D19V5, multiclass
    clus
vv   C17ORF63 MUTATED C17ORF63 WILD-TYPE
  T1                0                  4
  T2                1                 45
  T3                0                 41
  T4                2                 13
D19V6, multiclass
    clus
vv   C17ORF63 MUTATED C17ORF63 WILD-TYPE
  N0                2                 33
  N1                0                 39
  N2                1                 18
  N3                0                 12
D19V7, multiclass
    clus
vv   C17ORF63 MUTATED C17ORF63 WILD-TYPE
  M0                3                 96
  M1                0                 13
  MX                0                  4
D19V8, multiclass
     clus
vv    C17ORF63 MUTATED C17ORF63 WILD-TYPE
  I                  1                 17
  II                 0                 32
  III                1                 28
  IV                 1                 20

Clustering(20) Variable = SLITRK6 MUTATION ANALYSIS
D20V1, survival
                   sevent
clus2                0  1
  SLITRK6 MUTATED    6  0
  SLITRK6 WILD-TYPE 65 14
  SLITRK6 MUTATED SLITRK6 WILD-TYPE 
                6                79 
  SLITRK6 MUTATED SLITRK6 WILD-TYPE 
                0                14 
$`SLITRK6 MUTATED`
TCGA-CG-4437 TCGA-CG-4466 TCGA-CG-5721 TCGA-CG-5727 TCGA-D7-5578 TCGA-D7-6524 
        8.05        18.94         5.98        31.04         3.58         0.69 

$`SLITRK6 WILD-TYPE`
TCGA-B7-5816 TCGA-B7-5818 TCGA-BR-6452 TCGA-BR-6455 TCGA-BR-6457 TCGA-BR-6458 
        5.62         0.10         0.95         1.41         1.35         1.35 
TCGA-BR-6564 TCGA-BR-6565 TCGA-BR-6566 TCGA-BR-6705 TCGA-BR-6706 TCGA-BR-6707 
        0.82         0.62         0.62         1.71         2.17         0.99 
TCGA-BR-6709 TCGA-BR-6710 TCGA-BR-6801 TCGA-BR-6802 TCGA-BR-6803 TCGA-BR-6852 
        1.22         0.66         1.12         0.76         0.66         0.26 
TCGA-CD-5798 TCGA-CD-5799 TCGA-CD-5800 TCGA-CD-5801 TCGA-CD-5802 TCGA-CD-5803 
        0.82         0.69         0.36         0.49         0.30         0.07 
TCGA-CD-5813 TCGA-CG-4300 TCGA-CG-4301 TCGA-CG-4304 TCGA-CG-4305 TCGA-CG-4306 
        0.39        20.02         3.02        27.02        15.95         1.02 
TCGA-CG-4436 TCGA-CG-4438 TCGA-CG-4440 TCGA-CG-4441 TCGA-CG-4443 TCGA-CG-4444 
       52.96        54.05         4.01        14.01        29.98        47.05 
TCGA-CG-4449 TCGA-CG-4455 TCGA-CG-4460 TCGA-CG-4462 TCGA-CG-4465 TCGA-CG-4469 
       19.07        12.03        21.99         1.02         8.98         7.07 
TCGA-CG-4472 TCGA-CG-4474 TCGA-CG-4477 TCGA-CG-5716 TCGA-CG-5717 TCGA-CG-5718 
       12.00         1.02         1.02         1.02         6.94         1.02 
TCGA-CG-5719 TCGA-CG-5720 TCGA-CG-5722 TCGA-CG-5723 TCGA-CG-5724 TCGA-CG-5725 
        1.02         0.99         0.95        70.06        12.03        15.02 
TCGA-CG-5726 TCGA-CG-5728 TCGA-CG-5730 TCGA-CG-5732 TCGA-CG-5733 TCGA-CG-5734 
       28.96        65.10         4.01        55.04        21.07         7.99 
TCGA-D7-5577 TCGA-D7-5579 TCGA-D7-6518 TCGA-D7-6519 TCGA-D7-6520 TCGA-D7-6521 
        8.65         4.54         9.80        15.65         9.63         8.19 
TCGA-D7-6522 TCGA-D7-6525 TCGA-D7-6526 TCGA-D7-6527 TCGA-D7-6528 TCGA-D7-6815 
        6.90         5.95         6.61         4.14         1.68         3.65 
TCGA-D7-6817 TCGA-D7-6818 TCGA-D7-6820 TCGA-D7-6822 TCGA-EQ-5647 TCGA-F1-6177 
        4.70         4.04         2.93         4.27         0.62         6.54 
TCGA-F1-6874 
        2.01 

  SLITRK6 MUTATED SLITRK6 WILD-TYPE 
             0.69              0.07 
  SLITRK6 MUTATED SLITRK6 WILD-TYPE 
            31.04             70.06 
  SLITRK6 MUTATED SLITRK6 WILD-TYPE 
            7.015             4.010 
[1] "0.7 - 31.0 (7.0)" "0.1 - 70.1 (4.0)"
       TCGA-B7-5816        TCGA-B7-5818        TCGA-BR-6452        TCGA-BR-6455 
"SLITRK6 WILD-TYPE" "SLITRK6 WILD-TYPE" "SLITRK6 WILD-TYPE" "SLITRK6 WILD-TYPE" 
       TCGA-BR-6457        TCGA-BR-6458        TCGA-BR-6564        TCGA-BR-6565 
"SLITRK6 WILD-TYPE" "SLITRK6 WILD-TYPE" "SLITRK6 WILD-TYPE" "SLITRK6 WILD-TYPE" 
       TCGA-BR-6566        TCGA-BR-6705        TCGA-BR-6706        TCGA-BR-6707 
"SLITRK6 WILD-TYPE" "SLITRK6 WILD-TYPE" "SLITRK6 WILD-TYPE" "SLITRK6 WILD-TYPE" 
       TCGA-BR-6709        TCGA-BR-6710        TCGA-BR-6801        TCGA-BR-6802 
"SLITRK6 WILD-TYPE" "SLITRK6 WILD-TYPE" "SLITRK6 WILD-TYPE" "SLITRK6 WILD-TYPE" 
       TCGA-BR-6803        TCGA-BR-6852        TCGA-CD-5798        TCGA-CD-5799 
"SLITRK6 WILD-TYPE" "SLITRK6 WILD-TYPE" "SLITRK6 WILD-TYPE" "SLITRK6 WILD-TYPE" 
       TCGA-CD-5800        TCGA-CD-5801        TCGA-CD-5802        TCGA-CD-5803 
"SLITRK6 WILD-TYPE" "SLITRK6 WILD-TYPE" "SLITRK6 WILD-TYPE" "SLITRK6 WILD-TYPE" 
       TCGA-CD-5813        TCGA-CG-4300        TCGA-CG-4301        TCGA-CG-4304 
"SLITRK6 WILD-TYPE" "SLITRK6 WILD-TYPE" "SLITRK6 WILD-TYPE" "SLITRK6 WILD-TYPE" 
       TCGA-CG-4305        TCGA-CG-4306        TCGA-CG-4436        TCGA-CG-4437 
"SLITRK6 WILD-TYPE" "SLITRK6 WILD-TYPE" "SLITRK6 WILD-TYPE"   "SLITRK6 MUTATED" 
       TCGA-CG-4438        TCGA-CG-4440        TCGA-CG-4441        TCGA-CG-4443 
"SLITRK6 WILD-TYPE" "SLITRK6 WILD-TYPE" "SLITRK6 WILD-TYPE" "SLITRK6 WILD-TYPE" 
       TCGA-CG-4444        TCGA-CG-4449        TCGA-CG-4455        TCGA-CG-4460 
"SLITRK6 WILD-TYPE" "SLITRK6 WILD-TYPE" "SLITRK6 WILD-TYPE" "SLITRK6 WILD-TYPE" 
       TCGA-CG-4462        TCGA-CG-4465        TCGA-CG-4466        TCGA-CG-4469 
"SLITRK6 WILD-TYPE" "SLITRK6 WILD-TYPE"   "SLITRK6 MUTATED" "SLITRK6 WILD-TYPE" 
       TCGA-CG-4472        TCGA-CG-4474        TCGA-CG-4477        TCGA-CG-5716 
"SLITRK6 WILD-TYPE" "SLITRK6 WILD-TYPE" "SLITRK6 WILD-TYPE" "SLITRK6 WILD-TYPE" 
       TCGA-CG-5717        TCGA-CG-5718        TCGA-CG-5719        TCGA-CG-5720 
"SLITRK6 WILD-TYPE" "SLITRK6 WILD-TYPE" "SLITRK6 WILD-TYPE" "SLITRK6 WILD-TYPE" 
       TCGA-CG-5721        TCGA-CG-5722        TCGA-CG-5723        TCGA-CG-5724 
  "SLITRK6 MUTATED" "SLITRK6 WILD-TYPE" "SLITRK6 WILD-TYPE" "SLITRK6 WILD-TYPE" 
       TCGA-CG-5725        TCGA-CG-5726        TCGA-CG-5727        TCGA-CG-5728 
"SLITRK6 WILD-TYPE" "SLITRK6 WILD-TYPE"   "SLITRK6 MUTATED" "SLITRK6 WILD-TYPE" 
       TCGA-CG-5730        TCGA-CG-5732        TCGA-CG-5733        TCGA-CG-5734 
"SLITRK6 WILD-TYPE" "SLITRK6 WILD-TYPE" "SLITRK6 WILD-TYPE" "SLITRK6 WILD-TYPE" 
       TCGA-D7-5577        TCGA-D7-5578        TCGA-D7-5579        TCGA-D7-6518 
"SLITRK6 WILD-TYPE"   "SLITRK6 MUTATED" "SLITRK6 WILD-TYPE" "SLITRK6 WILD-TYPE" 
       TCGA-D7-6519        TCGA-D7-6520        TCGA-D7-6521        TCGA-D7-6522 
"SLITRK6 WILD-TYPE" "SLITRK6 WILD-TYPE" "SLITRK6 WILD-TYPE" "SLITRK6 WILD-TYPE" 
       TCGA-D7-6524        TCGA-D7-6525        TCGA-D7-6526        TCGA-D7-6527 
  "SLITRK6 MUTATED" "SLITRK6 WILD-TYPE" "SLITRK6 WILD-TYPE" "SLITRK6 WILD-TYPE" 
       TCGA-D7-6528        TCGA-D7-6815        TCGA-D7-6817        TCGA-D7-6818 
"SLITRK6 WILD-TYPE" "SLITRK6 WILD-TYPE" "SLITRK6 WILD-TYPE" "SLITRK6 WILD-TYPE" 
       TCGA-D7-6820        TCGA-D7-6822        TCGA-EQ-5647        TCGA-F1-6177 
"SLITRK6 WILD-TYPE" "SLITRK6 WILD-TYPE" "SLITRK6 WILD-TYPE" "SLITRK6 WILD-TYPE" 
       TCGA-F1-6874 
"SLITRK6 WILD-TYPE" 
       TCGA-B7-5816        TCGA-B7-5818        TCGA-BR-6452        TCGA-BR-6455 
"SLITRK6 WILD-TYPE" "SLITRK6 WILD-TYPE" "SLITRK6 WILD-TYPE" "SLITRK6 WILD-TYPE" 
       TCGA-BR-6457        TCGA-BR-6458        TCGA-BR-6564        TCGA-BR-6565 
"SLITRK6 WILD-TYPE" "SLITRK6 WILD-TYPE" "SLITRK6 WILD-TYPE" "SLITRK6 WILD-TYPE" 
       TCGA-BR-6566        TCGA-BR-6705        TCGA-BR-6706        TCGA-BR-6707 
"SLITRK6 WILD-TYPE" "SLITRK6 WILD-TYPE" "SLITRK6 WILD-TYPE" "SLITRK6 WILD-TYPE" 
       TCGA-BR-6709        TCGA-BR-6710        TCGA-BR-6801        TCGA-BR-6802 
"SLITRK6 WILD-TYPE" "SLITRK6 WILD-TYPE" "SLITRK6 WILD-TYPE" "SLITRK6 WILD-TYPE" 
       TCGA-BR-6803        TCGA-BR-6852        TCGA-CD-5798        TCGA-CD-5799 
"SLITRK6 WILD-TYPE" "SLITRK6 WILD-TYPE" "SLITRK6 WILD-TYPE" "SLITRK6 WILD-TYPE" 
       TCGA-CD-5800        TCGA-CD-5801        TCGA-CD-5802        TCGA-CD-5803 
"SLITRK6 WILD-TYPE" "SLITRK6 WILD-TYPE" "SLITRK6 WILD-TYPE" "SLITRK6 WILD-TYPE" 
       TCGA-CD-5813        TCGA-CG-4300        TCGA-CG-4301        TCGA-CG-4304 
"SLITRK6 WILD-TYPE" "SLITRK6 WILD-TYPE" "SLITRK6 WILD-TYPE" "SLITRK6 WILD-TYPE" 
       TCGA-CG-4305        TCGA-CG-4306        TCGA-CG-4436        TCGA-CG-4437 
"SLITRK6 WILD-TYPE" "SLITRK6 WILD-TYPE" "SLITRK6 WILD-TYPE"   "SLITRK6 MUTATED" 
       TCGA-CG-4438        TCGA-CG-4440        TCGA-CG-4441        TCGA-CG-4443 
"SLITRK6 WILD-TYPE" "SLITRK6 WILD-TYPE" "SLITRK6 WILD-TYPE" "SLITRK6 WILD-TYPE" 
       TCGA-CG-4444        TCGA-CG-4449        TCGA-CG-4455        TCGA-CG-4460 
"SLITRK6 WILD-TYPE" "SLITRK6 WILD-TYPE" "SLITRK6 WILD-TYPE" "SLITRK6 WILD-TYPE" 
       TCGA-CG-4462        TCGA-CG-4465        TCGA-CG-4466        TCGA-CG-4469 
"SLITRK6 WILD-TYPE" "SLITRK6 WILD-TYPE"   "SLITRK6 MUTATED" "SLITRK6 WILD-TYPE" 
       TCGA-CG-4472        TCGA-CG-4474        TCGA-CG-4477        TCGA-CG-5716 
"SLITRK6 WILD-TYPE" "SLITRK6 WILD-TYPE" "SLITRK6 WILD-TYPE" "SLITRK6 WILD-TYPE" 
       TCGA-CG-5717        TCGA-CG-5718        TCGA-CG-5719        TCGA-CG-5720 
"SLITRK6 WILD-TYPE" "SLITRK6 WILD-TYPE" "SLITRK6 WILD-TYPE" "SLITRK6 WILD-TYPE" 
       TCGA-CG-5721        TCGA-CG-5722        TCGA-CG-5723        TCGA-CG-5724 
  "SLITRK6 MUTATED" "SLITRK6 WILD-TYPE" "SLITRK6 WILD-TYPE" "SLITRK6 WILD-TYPE" 
       TCGA-CG-5725        TCGA-CG-5726        TCGA-CG-5727        TCGA-CG-5728 
"SLITRK6 WILD-TYPE" "SLITRK6 WILD-TYPE"   "SLITRK6 MUTATED" "SLITRK6 WILD-TYPE" 
       TCGA-CG-5730        TCGA-CG-5732        TCGA-CG-5733        TCGA-CG-5734 
"SLITRK6 WILD-TYPE" "SLITRK6 WILD-TYPE" "SLITRK6 WILD-TYPE" "SLITRK6 WILD-TYPE" 
       TCGA-D7-5577        TCGA-D7-5578        TCGA-D7-5579        TCGA-D7-6518 
"SLITRK6 WILD-TYPE"   "SLITRK6 MUTATED" "SLITRK6 WILD-TYPE" "SLITRK6 WILD-TYPE" 
       TCGA-D7-6519        TCGA-D7-6520        TCGA-D7-6521        TCGA-D7-6522 
"SLITRK6 WILD-TYPE" "SLITRK6 WILD-TYPE" "SLITRK6 WILD-TYPE" "SLITRK6 WILD-TYPE" 
       TCGA-D7-6524        TCGA-D7-6525        TCGA-D7-6526        TCGA-D7-6527 
  "SLITRK6 MUTATED" "SLITRK6 WILD-TYPE" "SLITRK6 WILD-TYPE" "SLITRK6 WILD-TYPE" 
       TCGA-D7-6528        TCGA-D7-6815        TCGA-D7-6817        TCGA-D7-6818 
"SLITRK6 WILD-TYPE" "SLITRK6 WILD-TYPE" "SLITRK6 WILD-TYPE" "SLITRK6 WILD-TYPE" 
       TCGA-D7-6820        TCGA-D7-6822        TCGA-EQ-5647        TCGA-F1-6177 
"SLITRK6 WILD-TYPE" "SLITRK6 WILD-TYPE" "SLITRK6 WILD-TYPE" "SLITRK6 WILD-TYPE" 
       TCGA-F1-6874 
"SLITRK6 WILD-TYPE" 
       TCGA-B7-5816        TCGA-B7-5818        TCGA-BR-6452        TCGA-BR-6455 
"SLITRK6 WILD-TYPE" "SLITRK6 WILD-TYPE" "SLITRK6 WILD-TYPE" "SLITRK6 WILD-TYPE" 
       TCGA-BR-6457        TCGA-BR-6458        TCGA-BR-6564        TCGA-BR-6565 
"SLITRK6 WILD-TYPE" "SLITRK6 WILD-TYPE" "SLITRK6 WILD-TYPE" "SLITRK6 WILD-TYPE" 
       TCGA-BR-6566        TCGA-BR-6705        TCGA-BR-6706        TCGA-BR-6707 
"SLITRK6 WILD-TYPE" "SLITRK6 WILD-TYPE" "SLITRK6 WILD-TYPE" "SLITRK6 WILD-TYPE" 
       TCGA-BR-6709        TCGA-BR-6710        TCGA-BR-6801        TCGA-BR-6802 
"SLITRK6 WILD-TYPE" "SLITRK6 WILD-TYPE" "SLITRK6 WILD-TYPE" "SLITRK6 WILD-TYPE" 
       TCGA-BR-6803        TCGA-BR-6852        TCGA-CD-5798        TCGA-CD-5799 
"SLITRK6 WILD-TYPE" "SLITRK6 WILD-TYPE" "SLITRK6 WILD-TYPE" "SLITRK6 WILD-TYPE" 
       TCGA-CD-5800        TCGA-CD-5801        TCGA-CD-5802        TCGA-CD-5803 
"SLITRK6 WILD-TYPE" "SLITRK6 WILD-TYPE" "SLITRK6 WILD-TYPE" "SLITRK6 WILD-TYPE" 
       TCGA-CD-5813        TCGA-CG-4300        TCGA-CG-4301        TCGA-CG-4304 
"SLITRK6 WILD-TYPE" "SLITRK6 WILD-TYPE" "SLITRK6 WILD-TYPE" "SLITRK6 WILD-TYPE" 
       TCGA-CG-4305        TCGA-CG-4306        TCGA-CG-4436        TCGA-CG-4437 
"SLITRK6 WILD-TYPE" "SLITRK6 WILD-TYPE" "SLITRK6 WILD-TYPE"   "SLITRK6 MUTATED" 
       TCGA-CG-4438        TCGA-CG-4440        TCGA-CG-4441        TCGA-CG-4443 
"SLITRK6 WILD-TYPE" "SLITRK6 WILD-TYPE" "SLITRK6 WILD-TYPE" "SLITRK6 WILD-TYPE" 
       TCGA-CG-4444        TCGA-CG-4449        TCGA-CG-4455        TCGA-CG-4460 
"SLITRK6 WILD-TYPE" "SLITRK6 WILD-TYPE" "SLITRK6 WILD-TYPE" "SLITRK6 WILD-TYPE" 
       TCGA-CG-4462        TCGA-CG-4465        TCGA-CG-4466        TCGA-CG-4469 
"SLITRK6 WILD-TYPE" "SLITRK6 WILD-TYPE"   "SLITRK6 MUTATED" "SLITRK6 WILD-TYPE" 
       TCGA-CG-4472        TCGA-CG-4474        TCGA-CG-4477        TCGA-CG-5716 
"SLITRK6 WILD-TYPE" "SLITRK6 WILD-TYPE" "SLITRK6 WILD-TYPE" "SLITRK6 WILD-TYPE" 
       TCGA-CG-5717        TCGA-CG-5718        TCGA-CG-5719        TCGA-CG-5720 
"SLITRK6 WILD-TYPE" "SLITRK6 WILD-TYPE" "SLITRK6 WILD-TYPE" "SLITRK6 WILD-TYPE" 
       TCGA-CG-5721        TCGA-CG-5722        TCGA-CG-5723        TCGA-CG-5724 
  "SLITRK6 MUTATED" "SLITRK6 WILD-TYPE" "SLITRK6 WILD-TYPE" "SLITRK6 WILD-TYPE" 
       TCGA-CG-5725        TCGA-CG-5726        TCGA-CG-5727        TCGA-CG-5728 
"SLITRK6 WILD-TYPE" "SLITRK6 WILD-TYPE"   "SLITRK6 MUTATED" "SLITRK6 WILD-TYPE" 
       TCGA-CG-5730        TCGA-CG-5732        TCGA-CG-5733        TCGA-CG-5734 
"SLITRK6 WILD-TYPE" "SLITRK6 WILD-TYPE" "SLITRK6 WILD-TYPE" "SLITRK6 WILD-TYPE" 
       TCGA-D7-5577        TCGA-D7-5578        TCGA-D7-5579        TCGA-D7-6518 
"SLITRK6 WILD-TYPE"   "SLITRK6 MUTATED" "SLITRK6 WILD-TYPE" "SLITRK6 WILD-TYPE" 
       TCGA-D7-6519        TCGA-D7-6520        TCGA-D7-6521        TCGA-D7-6522 
"SLITRK6 WILD-TYPE" "SLITRK6 WILD-TYPE" "SLITRK6 WILD-TYPE" "SLITRK6 WILD-TYPE" 
       TCGA-D7-6524        TCGA-D7-6525        TCGA-D7-6526        TCGA-D7-6527 
  "SLITRK6 MUTATED" "SLITRK6 WILD-TYPE" "SLITRK6 WILD-TYPE" "SLITRK6 WILD-TYPE" 
       TCGA-D7-6528        TCGA-D7-6815        TCGA-D7-6817        TCGA-D7-6818 
"SLITRK6 WILD-TYPE" "SLITRK6 WILD-TYPE" "SLITRK6 WILD-TYPE" "SLITRK6 WILD-TYPE" 
       TCGA-D7-6820        TCGA-D7-6822        TCGA-EQ-5647        TCGA-F1-6177 
"SLITRK6 WILD-TYPE" "SLITRK6 WILD-TYPE" "SLITRK6 WILD-TYPE" "SLITRK6 WILD-TYPE" 
       TCGA-F1-6874 
"SLITRK6 WILD-TYPE" 
[1] "hr="     "7.7e+07"
D20V2, continuous
D20V3, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  SLITRK6 MUTATED      3    7
  SLITRK6 WILD-TYPE   43   63
        clus
vv       SLITRK6 MUTATED SLITRK6 WILD-TYPE
  FEMALE               3                43
  MALE                 7                63
D20V4, multiclass
D20V5, multiclass
    clus
vv   SLITRK6 MUTATED SLITRK6 WILD-TYPE
  T1               0                 4
  T2               5                41
  T3               3                38
  T4               1                14
D20V6, multiclass
    clus
vv   SLITRK6 MUTATED SLITRK6 WILD-TYPE
  N0               2                33
  N1               5                34
  N2               1                18
  N3               0                12
D20V7, multiclass
    clus
vv   SLITRK6 MUTATED SLITRK6 WILD-TYPE
  M0               9                90
  M1               0                13
  MX               1                 3
D20V8, multiclass
     clus
vv    SLITRK6 MUTATED SLITRK6 WILD-TYPE
  I                 1                17
  II                5                27
  III               1                28
  IV                1                20

Clustering(21) Variable = RNF43 MUTATION ANALYSIS
D21V1, survival
                 sevent
clus2              0  1
  RNF43 MUTATED    1  5
  RNF43 WILD-TYPE 70  9
  RNF43 MUTATED RNF43 WILD-TYPE 
              6              79 
  RNF43 MUTATED RNF43 WILD-TYPE 
              5               9 
$`RNF43 MUTATED`
TCGA-CG-4469 TCGA-CG-5720 TCGA-CG-5726 TCGA-CG-5728 TCGA-CG-5733 TCGA-CG-5734 
        7.07         0.99        28.96        65.10        21.07         7.99 

$`RNF43 WILD-TYPE`
TCGA-B7-5816 TCGA-B7-5818 TCGA-BR-6452 TCGA-BR-6455 TCGA-BR-6457 TCGA-BR-6458 
        5.62         0.10         0.95         1.41         1.35         1.35 
TCGA-BR-6564 TCGA-BR-6565 TCGA-BR-6566 TCGA-BR-6705 TCGA-BR-6706 TCGA-BR-6707 
        0.82         0.62         0.62         1.71         2.17         0.99 
TCGA-BR-6709 TCGA-BR-6710 TCGA-BR-6801 TCGA-BR-6802 TCGA-BR-6803 TCGA-BR-6852 
        1.22         0.66         1.12         0.76         0.66         0.26 
TCGA-CD-5798 TCGA-CD-5799 TCGA-CD-5800 TCGA-CD-5801 TCGA-CD-5802 TCGA-CD-5803 
        0.82         0.69         0.36         0.49         0.30         0.07 
TCGA-CD-5813 TCGA-CG-4300 TCGA-CG-4301 TCGA-CG-4304 TCGA-CG-4305 TCGA-CG-4306 
        0.39        20.02         3.02        27.02        15.95         1.02 
TCGA-CG-4436 TCGA-CG-4437 TCGA-CG-4438 TCGA-CG-4440 TCGA-CG-4441 TCGA-CG-4443 
       52.96         8.05        54.05         4.01        14.01        29.98 
TCGA-CG-4444 TCGA-CG-4449 TCGA-CG-4455 TCGA-CG-4460 TCGA-CG-4462 TCGA-CG-4465 
       47.05        19.07        12.03        21.99         1.02         8.98 
TCGA-CG-4466 TCGA-CG-4472 TCGA-CG-4474 TCGA-CG-4477 TCGA-CG-5716 TCGA-CG-5717 
       18.94        12.00         1.02         1.02         1.02         6.94 
TCGA-CG-5718 TCGA-CG-5719 TCGA-CG-5721 TCGA-CG-5722 TCGA-CG-5723 TCGA-CG-5724 
        1.02         1.02         5.98         0.95        70.06        12.03 
TCGA-CG-5725 TCGA-CG-5727 TCGA-CG-5730 TCGA-CG-5732 TCGA-D7-5577 TCGA-D7-5578 
       15.02        31.04         4.01        55.04         8.65         3.58 
TCGA-D7-5579 TCGA-D7-6518 TCGA-D7-6519 TCGA-D7-6520 TCGA-D7-6521 TCGA-D7-6522 
        4.54         9.80        15.65         9.63         8.19         6.90 
TCGA-D7-6524 TCGA-D7-6525 TCGA-D7-6526 TCGA-D7-6527 TCGA-D7-6528 TCGA-D7-6815 
        0.69         5.95         6.61         4.14         1.68         3.65 
TCGA-D7-6817 TCGA-D7-6818 TCGA-D7-6820 TCGA-D7-6822 TCGA-EQ-5647 TCGA-F1-6177 
        4.70         4.04         2.93         4.27         0.62         6.54 
TCGA-F1-6874 
        2.01 

  RNF43 MUTATED RNF43 WILD-TYPE 
           0.99            0.07 
  RNF43 MUTATED RNF43 WILD-TYPE 
          65.10           70.06 
  RNF43 MUTATED RNF43 WILD-TYPE 
          14.53            3.65 
[1] "1.0 - 65.1 (14.5)" "0.1 - 70.1 (3.6)" 
     TCGA-B7-5816      TCGA-B7-5818      TCGA-BR-6452      TCGA-BR-6455 
"RNF43 WILD-TYPE" "RNF43 WILD-TYPE" "RNF43 WILD-TYPE" "RNF43 WILD-TYPE" 
     TCGA-BR-6457      TCGA-BR-6458      TCGA-BR-6564      TCGA-BR-6565 
"RNF43 WILD-TYPE" "RNF43 WILD-TYPE" "RNF43 WILD-TYPE" "RNF43 WILD-TYPE" 
     TCGA-BR-6566      TCGA-BR-6705      TCGA-BR-6706      TCGA-BR-6707 
"RNF43 WILD-TYPE" "RNF43 WILD-TYPE" "RNF43 WILD-TYPE" "RNF43 WILD-TYPE" 
     TCGA-BR-6709      TCGA-BR-6710      TCGA-BR-6801      TCGA-BR-6802 
"RNF43 WILD-TYPE" "RNF43 WILD-TYPE" "RNF43 WILD-TYPE" "RNF43 WILD-TYPE" 
     TCGA-BR-6803      TCGA-BR-6852      TCGA-CD-5798      TCGA-CD-5799 
"RNF43 WILD-TYPE" "RNF43 WILD-TYPE" "RNF43 WILD-TYPE" "RNF43 WILD-TYPE" 
     TCGA-CD-5800      TCGA-CD-5801      TCGA-CD-5802      TCGA-CD-5803 
"RNF43 WILD-TYPE" "RNF43 WILD-TYPE" "RNF43 WILD-TYPE" "RNF43 WILD-TYPE" 
     TCGA-CD-5813      TCGA-CG-4300      TCGA-CG-4301      TCGA-CG-4304 
"RNF43 WILD-TYPE" "RNF43 WILD-TYPE" "RNF43 WILD-TYPE" "RNF43 WILD-TYPE" 
     TCGA-CG-4305      TCGA-CG-4306      TCGA-CG-4436      TCGA-CG-4437 
"RNF43 WILD-TYPE" "RNF43 WILD-TYPE" "RNF43 WILD-TYPE" "RNF43 WILD-TYPE" 
     TCGA-CG-4438      TCGA-CG-4440      TCGA-CG-4441      TCGA-CG-4443 
"RNF43 WILD-TYPE" "RNF43 WILD-TYPE" "RNF43 WILD-TYPE" "RNF43 WILD-TYPE" 
     TCGA-CG-4444      TCGA-CG-4449      TCGA-CG-4455      TCGA-CG-4460 
"RNF43 WILD-TYPE" "RNF43 WILD-TYPE" "RNF43 WILD-TYPE" "RNF43 WILD-TYPE" 
     TCGA-CG-4462      TCGA-CG-4465      TCGA-CG-4466      TCGA-CG-4469 
"RNF43 WILD-TYPE" "RNF43 WILD-TYPE" "RNF43 WILD-TYPE"   "RNF43 MUTATED" 
     TCGA-CG-4472      TCGA-CG-4474      TCGA-CG-4477      TCGA-CG-5716 
"RNF43 WILD-TYPE" "RNF43 WILD-TYPE" "RNF43 WILD-TYPE" "RNF43 WILD-TYPE" 
     TCGA-CG-5717      TCGA-CG-5718      TCGA-CG-5719      TCGA-CG-5720 
"RNF43 WILD-TYPE" "RNF43 WILD-TYPE" "RNF43 WILD-TYPE"   "RNF43 MUTATED" 
     TCGA-CG-5721      TCGA-CG-5722      TCGA-CG-5723      TCGA-CG-5724 
"RNF43 WILD-TYPE" "RNF43 WILD-TYPE" "RNF43 WILD-TYPE" "RNF43 WILD-TYPE" 
     TCGA-CG-5725      TCGA-CG-5726      TCGA-CG-5727      TCGA-CG-5728 
"RNF43 WILD-TYPE"   "RNF43 MUTATED" "RNF43 WILD-TYPE"   "RNF43 MUTATED" 
     TCGA-CG-5730      TCGA-CG-5732      TCGA-CG-5733      TCGA-CG-5734 
"RNF43 WILD-TYPE" "RNF43 WILD-TYPE"   "RNF43 MUTATED"   "RNF43 MUTATED" 
     TCGA-D7-5577      TCGA-D7-5578      TCGA-D7-5579      TCGA-D7-6518 
"RNF43 WILD-TYPE" "RNF43 WILD-TYPE" "RNF43 WILD-TYPE" "RNF43 WILD-TYPE" 
     TCGA-D7-6519      TCGA-D7-6520      TCGA-D7-6521      TCGA-D7-6522 
"RNF43 WILD-TYPE" "RNF43 WILD-TYPE" "RNF43 WILD-TYPE" "RNF43 WILD-TYPE" 
     TCGA-D7-6524      TCGA-D7-6525      TCGA-D7-6526      TCGA-D7-6527 
"RNF43 WILD-TYPE" "RNF43 WILD-TYPE" "RNF43 WILD-TYPE" "RNF43 WILD-TYPE" 
     TCGA-D7-6528      TCGA-D7-6815      TCGA-D7-6817      TCGA-D7-6818 
"RNF43 WILD-TYPE" "RNF43 WILD-TYPE" "RNF43 WILD-TYPE" "RNF43 WILD-TYPE" 
     TCGA-D7-6820      TCGA-D7-6822      TCGA-EQ-5647      TCGA-F1-6177 
"RNF43 WILD-TYPE" "RNF43 WILD-TYPE" "RNF43 WILD-TYPE" "RNF43 WILD-TYPE" 
     TCGA-F1-6874 
"RNF43 WILD-TYPE" 
     TCGA-B7-5816      TCGA-B7-5818      TCGA-BR-6452      TCGA-BR-6455 
"RNF43 WILD-TYPE" "RNF43 WILD-TYPE" "RNF43 WILD-TYPE" "RNF43 WILD-TYPE" 
     TCGA-BR-6457      TCGA-BR-6458      TCGA-BR-6564      TCGA-BR-6565 
"RNF43 WILD-TYPE" "RNF43 WILD-TYPE" "RNF43 WILD-TYPE" "RNF43 WILD-TYPE" 
     TCGA-BR-6566      TCGA-BR-6705      TCGA-BR-6706      TCGA-BR-6707 
"RNF43 WILD-TYPE" "RNF43 WILD-TYPE" "RNF43 WILD-TYPE" "RNF43 WILD-TYPE" 
     TCGA-BR-6709      TCGA-BR-6710      TCGA-BR-6801      TCGA-BR-6802 
"RNF43 WILD-TYPE" "RNF43 WILD-TYPE" "RNF43 WILD-TYPE" "RNF43 WILD-TYPE" 
     TCGA-BR-6803      TCGA-BR-6852      TCGA-CD-5798      TCGA-CD-5799 
"RNF43 WILD-TYPE" "RNF43 WILD-TYPE" "RNF43 WILD-TYPE" "RNF43 WILD-TYPE" 
     TCGA-CD-5800      TCGA-CD-5801      TCGA-CD-5802      TCGA-CD-5803 
"RNF43 WILD-TYPE" "RNF43 WILD-TYPE" "RNF43 WILD-TYPE" "RNF43 WILD-TYPE" 
     TCGA-CD-5813      TCGA-CG-4300      TCGA-CG-4301      TCGA-CG-4304 
"RNF43 WILD-TYPE" "RNF43 WILD-TYPE" "RNF43 WILD-TYPE" "RNF43 WILD-TYPE" 
     TCGA-CG-4305      TCGA-CG-4306      TCGA-CG-4436      TCGA-CG-4437 
"RNF43 WILD-TYPE" "RNF43 WILD-TYPE" "RNF43 WILD-TYPE" "RNF43 WILD-TYPE" 
     TCGA-CG-4438      TCGA-CG-4440      TCGA-CG-4441      TCGA-CG-4443 
"RNF43 WILD-TYPE" "RNF43 WILD-TYPE" "RNF43 WILD-TYPE" "RNF43 WILD-TYPE" 
     TCGA-CG-4444      TCGA-CG-4449      TCGA-CG-4455      TCGA-CG-4460 
"RNF43 WILD-TYPE" "RNF43 WILD-TYPE" "RNF43 WILD-TYPE" "RNF43 WILD-TYPE" 
     TCGA-CG-4462      TCGA-CG-4465      TCGA-CG-4466      TCGA-CG-4469 
"RNF43 WILD-TYPE" "RNF43 WILD-TYPE" "RNF43 WILD-TYPE"   "RNF43 MUTATED" 
     TCGA-CG-4472      TCGA-CG-4474      TCGA-CG-4477      TCGA-CG-5716 
"RNF43 WILD-TYPE" "RNF43 WILD-TYPE" "RNF43 WILD-TYPE" "RNF43 WILD-TYPE" 
     TCGA-CG-5717      TCGA-CG-5718      TCGA-CG-5719      TCGA-CG-5720 
"RNF43 WILD-TYPE" "RNF43 WILD-TYPE" "RNF43 WILD-TYPE"   "RNF43 MUTATED" 
     TCGA-CG-5721      TCGA-CG-5722      TCGA-CG-5723      TCGA-CG-5724 
"RNF43 WILD-TYPE" "RNF43 WILD-TYPE" "RNF43 WILD-TYPE" "RNF43 WILD-TYPE" 
     TCGA-CG-5725      TCGA-CG-5726      TCGA-CG-5727      TCGA-CG-5728 
"RNF43 WILD-TYPE"   "RNF43 MUTATED" "RNF43 WILD-TYPE"   "RNF43 MUTATED" 
     TCGA-CG-5730      TCGA-CG-5732      TCGA-CG-5733      TCGA-CG-5734 
"RNF43 WILD-TYPE" "RNF43 WILD-TYPE"   "RNF43 MUTATED"   "RNF43 MUTATED" 
     TCGA-D7-5577      TCGA-D7-5578      TCGA-D7-5579      TCGA-D7-6518 
"RNF43 WILD-TYPE" "RNF43 WILD-TYPE" "RNF43 WILD-TYPE" "RNF43 WILD-TYPE" 
     TCGA-D7-6519      TCGA-D7-6520      TCGA-D7-6521      TCGA-D7-6522 
"RNF43 WILD-TYPE" "RNF43 WILD-TYPE" "RNF43 WILD-TYPE" "RNF43 WILD-TYPE" 
     TCGA-D7-6524      TCGA-D7-6525      TCGA-D7-6526      TCGA-D7-6527 
"RNF43 WILD-TYPE" "RNF43 WILD-TYPE" "RNF43 WILD-TYPE" "RNF43 WILD-TYPE" 
     TCGA-D7-6528      TCGA-D7-6815      TCGA-D7-6817      TCGA-D7-6818 
"RNF43 WILD-TYPE" "RNF43 WILD-TYPE" "RNF43 WILD-TYPE" "RNF43 WILD-TYPE" 
     TCGA-D7-6820      TCGA-D7-6822      TCGA-EQ-5647      TCGA-F1-6177 
"RNF43 WILD-TYPE" "RNF43 WILD-TYPE" "RNF43 WILD-TYPE" "RNF43 WILD-TYPE" 
     TCGA-F1-6874 
"RNF43 WILD-TYPE" 
     TCGA-B7-5816      TCGA-B7-5818      TCGA-BR-6452      TCGA-BR-6455 
"RNF43 WILD-TYPE" "RNF43 WILD-TYPE" "RNF43 WILD-TYPE" "RNF43 WILD-TYPE" 
     TCGA-BR-6457      TCGA-BR-6458      TCGA-BR-6564      TCGA-BR-6565 
"RNF43 WILD-TYPE" "RNF43 WILD-TYPE" "RNF43 WILD-TYPE" "RNF43 WILD-TYPE" 
     TCGA-BR-6566      TCGA-BR-6705      TCGA-BR-6706      TCGA-BR-6707 
"RNF43 WILD-TYPE" "RNF43 WILD-TYPE" "RNF43 WILD-TYPE" "RNF43 WILD-TYPE" 
     TCGA-BR-6709      TCGA-BR-6710      TCGA-BR-6801      TCGA-BR-6802 
"RNF43 WILD-TYPE" "RNF43 WILD-TYPE" "RNF43 WILD-TYPE" "RNF43 WILD-TYPE" 
     TCGA-BR-6803      TCGA-BR-6852      TCGA-CD-5798      TCGA-CD-5799 
"RNF43 WILD-TYPE" "RNF43 WILD-TYPE" "RNF43 WILD-TYPE" "RNF43 WILD-TYPE" 
     TCGA-CD-5800      TCGA-CD-5801      TCGA-CD-5802      TCGA-CD-5803 
"RNF43 WILD-TYPE" "RNF43 WILD-TYPE" "RNF43 WILD-TYPE" "RNF43 WILD-TYPE" 
     TCGA-CD-5813      TCGA-CG-4300      TCGA-CG-4301      TCGA-CG-4304 
"RNF43 WILD-TYPE" "RNF43 WILD-TYPE" "RNF43 WILD-TYPE" "RNF43 WILD-TYPE" 
     TCGA-CG-4305      TCGA-CG-4306      TCGA-CG-4436      TCGA-CG-4437 
"RNF43 WILD-TYPE" "RNF43 WILD-TYPE" "RNF43 WILD-TYPE" "RNF43 WILD-TYPE" 
     TCGA-CG-4438      TCGA-CG-4440      TCGA-CG-4441      TCGA-CG-4443 
"RNF43 WILD-TYPE" "RNF43 WILD-TYPE" "RNF43 WILD-TYPE" "RNF43 WILD-TYPE" 
     TCGA-CG-4444      TCGA-CG-4449      TCGA-CG-4455      TCGA-CG-4460 
"RNF43 WILD-TYPE" "RNF43 WILD-TYPE" "RNF43 WILD-TYPE" "RNF43 WILD-TYPE" 
     TCGA-CG-4462      TCGA-CG-4465      TCGA-CG-4466      TCGA-CG-4469 
"RNF43 WILD-TYPE" "RNF43 WILD-TYPE" "RNF43 WILD-TYPE"   "RNF43 MUTATED" 
     TCGA-CG-4472      TCGA-CG-4474      TCGA-CG-4477      TCGA-CG-5716 
"RNF43 WILD-TYPE" "RNF43 WILD-TYPE" "RNF43 WILD-TYPE" "RNF43 WILD-TYPE" 
     TCGA-CG-5717      TCGA-CG-5718      TCGA-CG-5719      TCGA-CG-5720 
"RNF43 WILD-TYPE" "RNF43 WILD-TYPE" "RNF43 WILD-TYPE"   "RNF43 MUTATED" 
     TCGA-CG-5721      TCGA-CG-5722      TCGA-CG-5723      TCGA-CG-5724 
"RNF43 WILD-TYPE" "RNF43 WILD-TYPE" "RNF43 WILD-TYPE" "RNF43 WILD-TYPE" 
     TCGA-CG-5725      TCGA-CG-5726      TCGA-CG-5727      TCGA-CG-5728 
"RNF43 WILD-TYPE"   "RNF43 MUTATED" "RNF43 WILD-TYPE"   "RNF43 MUTATED" 
     TCGA-CG-5730      TCGA-CG-5732      TCGA-CG-5733      TCGA-CG-5734 
"RNF43 WILD-TYPE" "RNF43 WILD-TYPE"   "RNF43 MUTATED"   "RNF43 MUTATED" 
     TCGA-D7-5577      TCGA-D7-5578      TCGA-D7-5579      TCGA-D7-6518 
"RNF43 WILD-TYPE" "RNF43 WILD-TYPE" "RNF43 WILD-TYPE" "RNF43 WILD-TYPE" 
     TCGA-D7-6519      TCGA-D7-6520      TCGA-D7-6521      TCGA-D7-6522 
"RNF43 WILD-TYPE" "RNF43 WILD-TYPE" "RNF43 WILD-TYPE" "RNF43 WILD-TYPE" 
     TCGA-D7-6524      TCGA-D7-6525      TCGA-D7-6526      TCGA-D7-6527 
"RNF43 WILD-TYPE" "RNF43 WILD-TYPE" "RNF43 WILD-TYPE" "RNF43 WILD-TYPE" 
     TCGA-D7-6528      TCGA-D7-6815      TCGA-D7-6817      TCGA-D7-6818 
"RNF43 WILD-TYPE" "RNF43 WILD-TYPE" "RNF43 WILD-TYPE" "RNF43 WILD-TYPE" 
     TCGA-D7-6820      TCGA-D7-6822      TCGA-EQ-5647      TCGA-F1-6177 
"RNF43 WILD-TYPE" "RNF43 WILD-TYPE" "RNF43 WILD-TYPE" "RNF43 WILD-TYPE" 
     TCGA-F1-6874 
"RNF43 WILD-TYPE" 
[1] "hr=" "3.3"
D21V2, continuous
D21V3, binary
[1] "tbl2"
                 cls
clus              [,1] [,2]
  RNF43 MUTATED      7    6
  RNF43 WILD-TYPE   39   64
        clus
vv       RNF43 MUTATED RNF43 WILD-TYPE
  FEMALE             7              39
  MALE               6              64
D21V4, multiclass
D21V5, multiclass
    clus
vv   RNF43 MUTATED RNF43 WILD-TYPE
  T1             2               2
  T2             6              40
  T3             2              39
  T4             2              13
D21V6, multiclass
    clus
vv   RNF43 MUTATED RNF43 WILD-TYPE
  N0             5              30
  N1             3              36
  N2             2              17
  N3             1              11
D21V7, multiclass
    clus
vv   RNF43 MUTATED RNF43 WILD-TYPE
  M0            13              86
  M1             0              13
  MX             0               4
D21V8, multiclass
     clus
vv    RNF43 MUTATED RNF43 WILD-TYPE
  I               4              14
  II              1              31
  III             3              26
  IV              2              19

Clustering(22) Variable = TM7SF4 MUTATION ANALYSIS
D22V1, survival
                  sevent
clus2               0  1
  TM7SF4 MUTATED    5  1
  TM7SF4 WILD-TYPE 66 13
  TM7SF4 MUTATED TM7SF4 WILD-TYPE 
               6               79 
  TM7SF4 MUTATED TM7SF4 WILD-TYPE 
               1               13 
$`TM7SF4 MUTATED`
TCGA-CD-5801 TCGA-CG-4472 TCGA-CG-5723 TCGA-CG-5734 TCGA-D7-6528 TCGA-F1-6874 
        0.49        12.00        70.06         7.99         1.68         2.01 

$`TM7SF4 WILD-TYPE`
TCGA-B7-5816 TCGA-B7-5818 TCGA-BR-6452 TCGA-BR-6455 TCGA-BR-6457 TCGA-BR-6458 
        5.62         0.10         0.95         1.41         1.35         1.35 
TCGA-BR-6564 TCGA-BR-6565 TCGA-BR-6566 TCGA-BR-6705 TCGA-BR-6706 TCGA-BR-6707 
        0.82         0.62         0.62         1.71         2.17         0.99 
TCGA-BR-6709 TCGA-BR-6710 TCGA-BR-6801 TCGA-BR-6802 TCGA-BR-6803 TCGA-BR-6852 
        1.22         0.66         1.12         0.76         0.66         0.26 
TCGA-CD-5798 TCGA-CD-5799 TCGA-CD-5800 TCGA-CD-5802 TCGA-CD-5803 TCGA-CD-5813 
        0.82         0.69         0.36         0.30         0.07         0.39 
TCGA-CG-4300 TCGA-CG-4301 TCGA-CG-4304 TCGA-CG-4305 TCGA-CG-4306 TCGA-CG-4436 
       20.02         3.02        27.02        15.95         1.02        52.96 
TCGA-CG-4437 TCGA-CG-4438 TCGA-CG-4440 TCGA-CG-4441 TCGA-CG-4443 TCGA-CG-4444 
        8.05        54.05         4.01        14.01        29.98        47.05 
TCGA-CG-4449 TCGA-CG-4455 TCGA-CG-4460 TCGA-CG-4462 TCGA-CG-4465 TCGA-CG-4466 
       19.07        12.03        21.99         1.02         8.98        18.94 
TCGA-CG-4469 TCGA-CG-4474 TCGA-CG-4477 TCGA-CG-5716 TCGA-CG-5717 TCGA-CG-5718 
        7.07         1.02         1.02         1.02         6.94         1.02 
TCGA-CG-5719 TCGA-CG-5720 TCGA-CG-5721 TCGA-CG-5722 TCGA-CG-5724 TCGA-CG-5725 
        1.02         0.99         5.98         0.95        12.03        15.02 
TCGA-CG-5726 TCGA-CG-5727 TCGA-CG-5728 TCGA-CG-5730 TCGA-CG-5732 TCGA-CG-5733 
       28.96        31.04        65.10         4.01        55.04        21.07 
TCGA-D7-5577 TCGA-D7-5578 TCGA-D7-5579 TCGA-D7-6518 TCGA-D7-6519 TCGA-D7-6520 
        8.65         3.58         4.54         9.80        15.65         9.63 
TCGA-D7-6521 TCGA-D7-6522 TCGA-D7-6524 TCGA-D7-6525 TCGA-D7-6526 TCGA-D7-6527 
        8.19         6.90         0.69         5.95         6.61         4.14 
TCGA-D7-6815 TCGA-D7-6817 TCGA-D7-6818 TCGA-D7-6820 TCGA-D7-6822 TCGA-EQ-5647 
        3.65         4.70         4.04         2.93         4.27         0.62 
TCGA-F1-6177 
        6.54 

  TM7SF4 MUTATED TM7SF4 WILD-TYPE 
            0.49             0.07 
  TM7SF4 MUTATED TM7SF4 WILD-TYPE 
           70.06            65.10 
  TM7SF4 MUTATED TM7SF4 WILD-TYPE 
            5.00             4.01 
[1] "0.5 - 70.1 (5.0)" "0.1 - 65.1 (4.0)"
      TCGA-B7-5816       TCGA-B7-5818       TCGA-BR-6452       TCGA-BR-6455 
"TM7SF4 WILD-TYPE" "TM7SF4 WILD-TYPE" "TM7SF4 WILD-TYPE" "TM7SF4 WILD-TYPE" 
      TCGA-BR-6457       TCGA-BR-6458       TCGA-BR-6564       TCGA-BR-6565 
"TM7SF4 WILD-TYPE" "TM7SF4 WILD-TYPE" "TM7SF4 WILD-TYPE" "TM7SF4 WILD-TYPE" 
      TCGA-BR-6566       TCGA-BR-6705       TCGA-BR-6706       TCGA-BR-6707 
"TM7SF4 WILD-TYPE" "TM7SF4 WILD-TYPE" "TM7SF4 WILD-TYPE" "TM7SF4 WILD-TYPE" 
      TCGA-BR-6709       TCGA-BR-6710       TCGA-BR-6801       TCGA-BR-6802 
"TM7SF4 WILD-TYPE" "TM7SF4 WILD-TYPE" "TM7SF4 WILD-TYPE" "TM7SF4 WILD-TYPE" 
      TCGA-BR-6803       TCGA-BR-6852       TCGA-CD-5798       TCGA-CD-5799 
"TM7SF4 WILD-TYPE" "TM7SF4 WILD-TYPE" "TM7SF4 WILD-TYPE" "TM7SF4 WILD-TYPE" 
      TCGA-CD-5800       TCGA-CD-5801       TCGA-CD-5802       TCGA-CD-5803 
"TM7SF4 WILD-TYPE"   "TM7SF4 MUTATED" "TM7SF4 WILD-TYPE" "TM7SF4 WILD-TYPE" 
      TCGA-CD-5813       TCGA-CG-4300       TCGA-CG-4301       TCGA-CG-4304 
"TM7SF4 WILD-TYPE" "TM7SF4 WILD-TYPE" "TM7SF4 WILD-TYPE" "TM7SF4 WILD-TYPE" 
      TCGA-CG-4305       TCGA-CG-4306       TCGA-CG-4436       TCGA-CG-4437 
"TM7SF4 WILD-TYPE" "TM7SF4 WILD-TYPE" "TM7SF4 WILD-TYPE" "TM7SF4 WILD-TYPE" 
      TCGA-CG-4438       TCGA-CG-4440       TCGA-CG-4441       TCGA-CG-4443 
"TM7SF4 WILD-TYPE" "TM7SF4 WILD-TYPE" "TM7SF4 WILD-TYPE" "TM7SF4 WILD-TYPE" 
      TCGA-CG-4444       TCGA-CG-4449       TCGA-CG-4455       TCGA-CG-4460 
"TM7SF4 WILD-TYPE" "TM7SF4 WILD-TYPE" "TM7SF4 WILD-TYPE" "TM7SF4 WILD-TYPE" 
      TCGA-CG-4462       TCGA-CG-4465       TCGA-CG-4466       TCGA-CG-4469 
"TM7SF4 WILD-TYPE" "TM7SF4 WILD-TYPE" "TM7SF4 WILD-TYPE" "TM7SF4 WILD-TYPE" 
      TCGA-CG-4472       TCGA-CG-4474       TCGA-CG-4477       TCGA-CG-5716 
  "TM7SF4 MUTATED" "TM7SF4 WILD-TYPE" "TM7SF4 WILD-TYPE" "TM7SF4 WILD-TYPE" 
      TCGA-CG-5717       TCGA-CG-5718       TCGA-CG-5719       TCGA-CG-5720 
"TM7SF4 WILD-TYPE" "TM7SF4 WILD-TYPE" "TM7SF4 WILD-TYPE" "TM7SF4 WILD-TYPE" 
      TCGA-CG-5721       TCGA-CG-5722       TCGA-CG-5723       TCGA-CG-5724 
"TM7SF4 WILD-TYPE" "TM7SF4 WILD-TYPE"   "TM7SF4 MUTATED" "TM7SF4 WILD-TYPE" 
      TCGA-CG-5725       TCGA-CG-5726       TCGA-CG-5727       TCGA-CG-5728 
"TM7SF4 WILD-TYPE" "TM7SF4 WILD-TYPE" "TM7SF4 WILD-TYPE" "TM7SF4 WILD-TYPE" 
      TCGA-CG-5730       TCGA-CG-5732       TCGA-CG-5733       TCGA-CG-5734 
"TM7SF4 WILD-TYPE" "TM7SF4 WILD-TYPE" "TM7SF4 WILD-TYPE"   "TM7SF4 MUTATED" 
      TCGA-D7-5577       TCGA-D7-5578       TCGA-D7-5579       TCGA-D7-6518 
"TM7SF4 WILD-TYPE" "TM7SF4 WILD-TYPE" "TM7SF4 WILD-TYPE" "TM7SF4 WILD-TYPE" 
      TCGA-D7-6519       TCGA-D7-6520       TCGA-D7-6521       TCGA-D7-6522 
"TM7SF4 WILD-TYPE" "TM7SF4 WILD-TYPE" "TM7SF4 WILD-TYPE" "TM7SF4 WILD-TYPE" 
      TCGA-D7-6524       TCGA-D7-6525       TCGA-D7-6526       TCGA-D7-6527 
"TM7SF4 WILD-TYPE" "TM7SF4 WILD-TYPE" "TM7SF4 WILD-TYPE" "TM7SF4 WILD-TYPE" 
      TCGA-D7-6528       TCGA-D7-6815       TCGA-D7-6817       TCGA-D7-6818 
  "TM7SF4 MUTATED" "TM7SF4 WILD-TYPE" "TM7SF4 WILD-TYPE" "TM7SF4 WILD-TYPE" 
      TCGA-D7-6820       TCGA-D7-6822       TCGA-EQ-5647       TCGA-F1-6177 
"TM7SF4 WILD-TYPE" "TM7SF4 WILD-TYPE" "TM7SF4 WILD-TYPE" "TM7SF4 WILD-TYPE" 
      TCGA-F1-6874 
  "TM7SF4 MUTATED" 
      TCGA-B7-5816       TCGA-B7-5818       TCGA-BR-6452       TCGA-BR-6455 
"TM7SF4 WILD-TYPE" "TM7SF4 WILD-TYPE" "TM7SF4 WILD-TYPE" "TM7SF4 WILD-TYPE" 
      TCGA-BR-6457       TCGA-BR-6458       TCGA-BR-6564       TCGA-BR-6565 
"TM7SF4 WILD-TYPE" "TM7SF4 WILD-TYPE" "TM7SF4 WILD-TYPE" "TM7SF4 WILD-TYPE" 
      TCGA-BR-6566       TCGA-BR-6705       TCGA-BR-6706       TCGA-BR-6707 
"TM7SF4 WILD-TYPE" "TM7SF4 WILD-TYPE" "TM7SF4 WILD-TYPE" "TM7SF4 WILD-TYPE" 
      TCGA-BR-6709       TCGA-BR-6710       TCGA-BR-6801       TCGA-BR-6802 
"TM7SF4 WILD-TYPE" "TM7SF4 WILD-TYPE" "TM7SF4 WILD-TYPE" "TM7SF4 WILD-TYPE" 
      TCGA-BR-6803       TCGA-BR-6852       TCGA-CD-5798       TCGA-CD-5799 
"TM7SF4 WILD-TYPE" "TM7SF4 WILD-TYPE" "TM7SF4 WILD-TYPE" "TM7SF4 WILD-TYPE" 
      TCGA-CD-5800       TCGA-CD-5801       TCGA-CD-5802       TCGA-CD-5803 
"TM7SF4 WILD-TYPE"   "TM7SF4 MUTATED" "TM7SF4 WILD-TYPE" "TM7SF4 WILD-TYPE" 
      TCGA-CD-5813       TCGA-CG-4300       TCGA-CG-4301       TCGA-CG-4304 
"TM7SF4 WILD-TYPE" "TM7SF4 WILD-TYPE" "TM7SF4 WILD-TYPE" "TM7SF4 WILD-TYPE" 
      TCGA-CG-4305       TCGA-CG-4306       TCGA-CG-4436       TCGA-CG-4437 
"TM7SF4 WILD-TYPE" "TM7SF4 WILD-TYPE" "TM7SF4 WILD-TYPE" "TM7SF4 WILD-TYPE" 
      TCGA-CG-4438       TCGA-CG-4440       TCGA-CG-4441       TCGA-CG-4443 
"TM7SF4 WILD-TYPE" "TM7SF4 WILD-TYPE" "TM7SF4 WILD-TYPE" "TM7SF4 WILD-TYPE" 
      TCGA-CG-4444       TCGA-CG-4449       TCGA-CG-4455       TCGA-CG-4460 
"TM7SF4 WILD-TYPE" "TM7SF4 WILD-TYPE" "TM7SF4 WILD-TYPE" "TM7SF4 WILD-TYPE" 
      TCGA-CG-4462       TCGA-CG-4465       TCGA-CG-4466       TCGA-CG-4469 
"TM7SF4 WILD-TYPE" "TM7SF4 WILD-TYPE" "TM7SF4 WILD-TYPE" "TM7SF4 WILD-TYPE" 
      TCGA-CG-4472       TCGA-CG-4474       TCGA-CG-4477       TCGA-CG-5716 
  "TM7SF4 MUTATED" "TM7SF4 WILD-TYPE" "TM7SF4 WILD-TYPE" "TM7SF4 WILD-TYPE" 
      TCGA-CG-5717       TCGA-CG-5718       TCGA-CG-5719       TCGA-CG-5720 
"TM7SF4 WILD-TYPE" "TM7SF4 WILD-TYPE" "TM7SF4 WILD-TYPE" "TM7SF4 WILD-TYPE" 
      TCGA-CG-5721       TCGA-CG-5722       TCGA-CG-5723       TCGA-CG-5724 
"TM7SF4 WILD-TYPE" "TM7SF4 WILD-TYPE"   "TM7SF4 MUTATED" "TM7SF4 WILD-TYPE" 
      TCGA-CG-5725       TCGA-CG-5726       TCGA-CG-5727       TCGA-CG-5728 
"TM7SF4 WILD-TYPE" "TM7SF4 WILD-TYPE" "TM7SF4 WILD-TYPE" "TM7SF4 WILD-TYPE" 
      TCGA-CG-5730       TCGA-CG-5732       TCGA-CG-5733       TCGA-CG-5734 
"TM7SF4 WILD-TYPE" "TM7SF4 WILD-TYPE" "TM7SF4 WILD-TYPE"   "TM7SF4 MUTATED" 
      TCGA-D7-5577       TCGA-D7-5578       TCGA-D7-5579       TCGA-D7-6518 
"TM7SF4 WILD-TYPE" "TM7SF4 WILD-TYPE" "TM7SF4 WILD-TYPE" "TM7SF4 WILD-TYPE" 
      TCGA-D7-6519       TCGA-D7-6520       TCGA-D7-6521       TCGA-D7-6522 
"TM7SF4 WILD-TYPE" "TM7SF4 WILD-TYPE" "TM7SF4 WILD-TYPE" "TM7SF4 WILD-TYPE" 
      TCGA-D7-6524       TCGA-D7-6525       TCGA-D7-6526       TCGA-D7-6527 
"TM7SF4 WILD-TYPE" "TM7SF4 WILD-TYPE" "TM7SF4 WILD-TYPE" "TM7SF4 WILD-TYPE" 
      TCGA-D7-6528       TCGA-D7-6815       TCGA-D7-6817       TCGA-D7-6818 
  "TM7SF4 MUTATED" "TM7SF4 WILD-TYPE" "TM7SF4 WILD-TYPE" "TM7SF4 WILD-TYPE" 
      TCGA-D7-6820       TCGA-D7-6822       TCGA-EQ-5647       TCGA-F1-6177 
"TM7SF4 WILD-TYPE" "TM7SF4 WILD-TYPE" "TM7SF4 WILD-TYPE" "TM7SF4 WILD-TYPE" 
      TCGA-F1-6874 
  "TM7SF4 MUTATED" 
      TCGA-B7-5816       TCGA-B7-5818       TCGA-BR-6452       TCGA-BR-6455 
"TM7SF4 WILD-TYPE" "TM7SF4 WILD-TYPE" "TM7SF4 WILD-TYPE" "TM7SF4 WILD-TYPE" 
      TCGA-BR-6457       TCGA-BR-6458       TCGA-BR-6564       TCGA-BR-6565 
"TM7SF4 WILD-TYPE" "TM7SF4 WILD-TYPE" "TM7SF4 WILD-TYPE" "TM7SF4 WILD-TYPE" 
      TCGA-BR-6566       TCGA-BR-6705       TCGA-BR-6706       TCGA-BR-6707 
"TM7SF4 WILD-TYPE" "TM7SF4 WILD-TYPE" "TM7SF4 WILD-TYPE" "TM7SF4 WILD-TYPE" 
      TCGA-BR-6709       TCGA-BR-6710       TCGA-BR-6801       TCGA-BR-6802 
"TM7SF4 WILD-TYPE" "TM7SF4 WILD-TYPE" "TM7SF4 WILD-TYPE" "TM7SF4 WILD-TYPE" 
      TCGA-BR-6803       TCGA-BR-6852       TCGA-CD-5798       TCGA-CD-5799 
"TM7SF4 WILD-TYPE" "TM7SF4 WILD-TYPE" "TM7SF4 WILD-TYPE" "TM7SF4 WILD-TYPE" 
      TCGA-CD-5800       TCGA-CD-5801       TCGA-CD-5802       TCGA-CD-5803 
"TM7SF4 WILD-TYPE"   "TM7SF4 MUTATED" "TM7SF4 WILD-TYPE" "TM7SF4 WILD-TYPE" 
      TCGA-CD-5813       TCGA-CG-4300       TCGA-CG-4301       TCGA-CG-4304 
"TM7SF4 WILD-TYPE" "TM7SF4 WILD-TYPE" "TM7SF4 WILD-TYPE" "TM7SF4 WILD-TYPE" 
      TCGA-CG-4305       TCGA-CG-4306       TCGA-CG-4436       TCGA-CG-4437 
"TM7SF4 WILD-TYPE" "TM7SF4 WILD-TYPE" "TM7SF4 WILD-TYPE" "TM7SF4 WILD-TYPE" 
      TCGA-CG-4438       TCGA-CG-4440       TCGA-CG-4441       TCGA-CG-4443 
"TM7SF4 WILD-TYPE" "TM7SF4 WILD-TYPE" "TM7SF4 WILD-TYPE" "TM7SF4 WILD-TYPE" 
      TCGA-CG-4444       TCGA-CG-4449       TCGA-CG-4455       TCGA-CG-4460 
"TM7SF4 WILD-TYPE" "TM7SF4 WILD-TYPE" "TM7SF4 WILD-TYPE" "TM7SF4 WILD-TYPE" 
      TCGA-CG-4462       TCGA-CG-4465       TCGA-CG-4466       TCGA-CG-4469 
"TM7SF4 WILD-TYPE" "TM7SF4 WILD-TYPE" "TM7SF4 WILD-TYPE" "TM7SF4 WILD-TYPE" 
      TCGA-CG-4472       TCGA-CG-4474       TCGA-CG-4477       TCGA-CG-5716 
  "TM7SF4 MUTATED" "TM7SF4 WILD-TYPE" "TM7SF4 WILD-TYPE" "TM7SF4 WILD-TYPE" 
      TCGA-CG-5717       TCGA-CG-5718       TCGA-CG-5719       TCGA-CG-5720 
"TM7SF4 WILD-TYPE" "TM7SF4 WILD-TYPE" "TM7SF4 WILD-TYPE" "TM7SF4 WILD-TYPE" 
      TCGA-CG-5721       TCGA-CG-5722       TCGA-CG-5723       TCGA-CG-5724 
"TM7SF4 WILD-TYPE" "TM7SF4 WILD-TYPE"   "TM7SF4 MUTATED" "TM7SF4 WILD-TYPE" 
      TCGA-CG-5725       TCGA-CG-5726       TCGA-CG-5727       TCGA-CG-5728 
"TM7SF4 WILD-TYPE" "TM7SF4 WILD-TYPE" "TM7SF4 WILD-TYPE" "TM7SF4 WILD-TYPE" 
      TCGA-CG-5730       TCGA-CG-5732       TCGA-CG-5733       TCGA-CG-5734 
"TM7SF4 WILD-TYPE" "TM7SF4 WILD-TYPE" "TM7SF4 WILD-TYPE"   "TM7SF4 MUTATED" 
      TCGA-D7-5577       TCGA-D7-5578       TCGA-D7-5579       TCGA-D7-6518 
"TM7SF4 WILD-TYPE" "TM7SF4 WILD-TYPE" "TM7SF4 WILD-TYPE" "TM7SF4 WILD-TYPE" 
      TCGA-D7-6519       TCGA-D7-6520       TCGA-D7-6521       TCGA-D7-6522 
"TM7SF4 WILD-TYPE" "TM7SF4 WILD-TYPE" "TM7SF4 WILD-TYPE" "TM7SF4 WILD-TYPE" 
      TCGA-D7-6524       TCGA-D7-6525       TCGA-D7-6526       TCGA-D7-6527 
"TM7SF4 WILD-TYPE" "TM7SF4 WILD-TYPE" "TM7SF4 WILD-TYPE" "TM7SF4 WILD-TYPE" 
      TCGA-D7-6528       TCGA-D7-6815       TCGA-D7-6817       TCGA-D7-6818 
  "TM7SF4 MUTATED" "TM7SF4 WILD-TYPE" "TM7SF4 WILD-TYPE" "TM7SF4 WILD-TYPE" 
      TCGA-D7-6820       TCGA-D7-6822       TCGA-EQ-5647       TCGA-F1-6177 
"TM7SF4 WILD-TYPE" "TM7SF4 WILD-TYPE" "TM7SF4 WILD-TYPE" "TM7SF4 WILD-TYPE" 
      TCGA-F1-6874 
  "TM7SF4 MUTATED" 
[1] "hr=" "1.1"
D22V2, continuous
D22V3, binary
[1] "tbl2"
                  cls
clus               [,1] [,2]
  TM7SF4 MUTATED      2    5
  TM7SF4 WILD-TYPE   44   65
        clus
vv       TM7SF4 MUTATED TM7SF4 WILD-TYPE
  FEMALE              2               44
  MALE                5               65
D22V4, multiclass
D22V5, multiclass
    clus
vv   TM7SF4 MUTATED TM7SF4 WILD-TYPE
  T1              0                4
  T2              3               43
  T3              2               39
  T4              2               13
D22V6, multiclass
    clus
vv   TM7SF4 MUTATED TM7SF4 WILD-TYPE
  N0              2               33
  N1              4               35
  N2              1               18
  N3              0               12
D22V7, multiclass
    clus
vv   TM7SF4 MUTATED TM7SF4 WILD-TYPE
  M0              7               92
  M1              0               13
  MX              0                4
D22V8, multiclass
     clus
vv    TM7SF4 MUTATED TM7SF4 WILD-TYPE
  I                2               16
  II               1               31
  III              2               27
  IV               2               19

Clustering(23) Variable = WBSCR17 MUTATION ANALYSIS
D23V1, survival
                   sevent
clus2                0  1
  WBSCR17 MUTATED    4  4
  WBSCR17 WILD-TYPE 67 10
  WBSCR17 MUTATED WBSCR17 WILD-TYPE 
                8                77 
  WBSCR17 MUTATED WBSCR17 WILD-TYPE 
                4                10 
$`WBSCR17 MUTATED`
TCGA-BR-6452 TCGA-BR-6458 TCGA-CG-4306 TCGA-CG-4440 TCGA-CG-5721 TCGA-CG-5726 
        0.95         1.35         1.02         4.01         5.98        28.96 
TCGA-CG-5728 TCGA-CG-5733 
       65.10        21.07 

$`WBSCR17 WILD-TYPE`
TCGA-B7-5816 TCGA-B7-5818 TCGA-BR-6455 TCGA-BR-6457 TCGA-BR-6564 TCGA-BR-6565 
        5.62         0.10         1.41         1.35         0.82         0.62 
TCGA-BR-6566 TCGA-BR-6705 TCGA-BR-6706 TCGA-BR-6707 TCGA-BR-6709 TCGA-BR-6710 
        0.62         1.71         2.17         0.99         1.22         0.66 
TCGA-BR-6801 TCGA-BR-6802 TCGA-BR-6803 TCGA-BR-6852 TCGA-CD-5798 TCGA-CD-5799 
        1.12         0.76         0.66         0.26         0.82         0.69 
TCGA-CD-5800 TCGA-CD-5801 TCGA-CD-5802 TCGA-CD-5803 TCGA-CD-5813 TCGA-CG-4300 
        0.36         0.49         0.30         0.07         0.39        20.02 
TCGA-CG-4301 TCGA-CG-4304 TCGA-CG-4305 TCGA-CG-4436 TCGA-CG-4437 TCGA-CG-4438 
        3.02        27.02        15.95        52.96         8.05        54.05 
TCGA-CG-4441 TCGA-CG-4443 TCGA-CG-4444 TCGA-CG-4449 TCGA-CG-4455 TCGA-CG-4460 
       14.01        29.98        47.05        19.07        12.03        21.99 
TCGA-CG-4462 TCGA-CG-4465 TCGA-CG-4466 TCGA-CG-4469 TCGA-CG-4472 TCGA-CG-4474 
        1.02         8.98        18.94         7.07        12.00         1.02 
TCGA-CG-4477 TCGA-CG-5716 TCGA-CG-5717 TCGA-CG-5718 TCGA-CG-5719 TCGA-CG-5720 
        1.02         1.02         6.94         1.02         1.02         0.99 
TCGA-CG-5722 TCGA-CG-5723 TCGA-CG-5724 TCGA-CG-5725 TCGA-CG-5727 TCGA-CG-5730 
        0.95        70.06        12.03        15.02        31.04         4.01 
TCGA-CG-5732 TCGA-CG-5734 TCGA-D7-5577 TCGA-D7-5578 TCGA-D7-5579 TCGA-D7-6518 
       55.04         7.99         8.65         3.58         4.54         9.80 
TCGA-D7-6519 TCGA-D7-6520 TCGA-D7-6521 TCGA-D7-6522 TCGA-D7-6524 TCGA-D7-6525 
       15.65         9.63         8.19         6.90         0.69         5.95 
TCGA-D7-6526 TCGA-D7-6527 TCGA-D7-6528 TCGA-D7-6815 TCGA-D7-6817 TCGA-D7-6818 
        6.61         4.14         1.68         3.65         4.70         4.04 
TCGA-D7-6820 TCGA-D7-6822 TCGA-EQ-5647 TCGA-F1-6177 TCGA-F1-6874 
        2.93         4.27         0.62         6.54         2.01 

  WBSCR17 MUTATED WBSCR17 WILD-TYPE 
             0.95              0.07 
  WBSCR17 MUTATED WBSCR17 WILD-TYPE 
            65.10             70.06 
  WBSCR17 MUTATED WBSCR17 WILD-TYPE 
            4.995             4.010 
[1] "0.9 - 65.1 (5.0)" "0.1 - 70.1 (4.0)"
       TCGA-B7-5816        TCGA-B7-5818        TCGA-BR-6452        TCGA-BR-6455 
"WBSCR17 WILD-TYPE" "WBSCR17 WILD-TYPE"   "WBSCR17 MUTATED" "WBSCR17 WILD-TYPE" 
       TCGA-BR-6457        TCGA-BR-6458        TCGA-BR-6564        TCGA-BR-6565 
"WBSCR17 WILD-TYPE"   "WBSCR17 MUTATED" "WBSCR17 WILD-TYPE" "WBSCR17 WILD-TYPE" 
       TCGA-BR-6566        TCGA-BR-6705        TCGA-BR-6706        TCGA-BR-6707 
"WBSCR17 WILD-TYPE" "WBSCR17 WILD-TYPE" "WBSCR17 WILD-TYPE" "WBSCR17 WILD-TYPE" 
       TCGA-BR-6709        TCGA-BR-6710        TCGA-BR-6801        TCGA-BR-6802 
"WBSCR17 WILD-TYPE" "WBSCR17 WILD-TYPE" "WBSCR17 WILD-TYPE" "WBSCR17 WILD-TYPE" 
       TCGA-BR-6803        TCGA-BR-6852        TCGA-CD-5798        TCGA-CD-5799 
"WBSCR17 WILD-TYPE" "WBSCR17 WILD-TYPE" "WBSCR17 WILD-TYPE" "WBSCR17 WILD-TYPE" 
       TCGA-CD-5800        TCGA-CD-5801        TCGA-CD-5802        TCGA-CD-5803 
"WBSCR17 WILD-TYPE" "WBSCR17 WILD-TYPE" "WBSCR17 WILD-TYPE" "WBSCR17 WILD-TYPE" 
       TCGA-CD-5813        TCGA-CG-4300        TCGA-CG-4301        TCGA-CG-4304 
"WBSCR17 WILD-TYPE" "WBSCR17 WILD-TYPE" "WBSCR17 WILD-TYPE" "WBSCR17 WILD-TYPE" 
       TCGA-CG-4305        TCGA-CG-4306        TCGA-CG-4436        TCGA-CG-4437 
"WBSCR17 WILD-TYPE"   "WBSCR17 MUTATED" "WBSCR17 WILD-TYPE" "WBSCR17 WILD-TYPE" 
       TCGA-CG-4438        TCGA-CG-4440        TCGA-CG-4441        TCGA-CG-4443 
"WBSCR17 WILD-TYPE"   "WBSCR17 MUTATED" "WBSCR17 WILD-TYPE" "WBSCR17 WILD-TYPE" 
       TCGA-CG-4444        TCGA-CG-4449        TCGA-CG-4455        TCGA-CG-4460 
"WBSCR17 WILD-TYPE" "WBSCR17 WILD-TYPE" "WBSCR17 WILD-TYPE" "WBSCR17 WILD-TYPE" 
       TCGA-CG-4462        TCGA-CG-4465        TCGA-CG-4466        TCGA-CG-4469 
"WBSCR17 WILD-TYPE" "WBSCR17 WILD-TYPE" "WBSCR17 WILD-TYPE" "WBSCR17 WILD-TYPE" 
       TCGA-CG-4472        TCGA-CG-4474        TCGA-CG-4477        TCGA-CG-5716 
"WBSCR17 WILD-TYPE" "WBSCR17 WILD-TYPE" "WBSCR17 WILD-TYPE" "WBSCR17 WILD-TYPE" 
       TCGA-CG-5717        TCGA-CG-5718        TCGA-CG-5719        TCGA-CG-5720 
"WBSCR17 WILD-TYPE" "WBSCR17 WILD-TYPE" "WBSCR17 WILD-TYPE" "WBSCR17 WILD-TYPE" 
       TCGA-CG-5721        TCGA-CG-5722        TCGA-CG-5723        TCGA-CG-5724 
  "WBSCR17 MUTATED" "WBSCR17 WILD-TYPE" "WBSCR17 WILD-TYPE" "WBSCR17 WILD-TYPE" 
       TCGA-CG-5725        TCGA-CG-5726        TCGA-CG-5727        TCGA-CG-5728 
"WBSCR17 WILD-TYPE"   "WBSCR17 MUTATED" "WBSCR17 WILD-TYPE"   "WBSCR17 MUTATED" 
       TCGA-CG-5730        TCGA-CG-5732        TCGA-CG-5733        TCGA-CG-5734 
"WBSCR17 WILD-TYPE" "WBSCR17 WILD-TYPE"   "WBSCR17 MUTATED" "WBSCR17 WILD-TYPE" 
       TCGA-D7-5577        TCGA-D7-5578        TCGA-D7-5579        TCGA-D7-6518 
"WBSCR17 WILD-TYPE" "WBSCR17 WILD-TYPE" "WBSCR17 WILD-TYPE" "WBSCR17 WILD-TYPE" 
       TCGA-D7-6519        TCGA-D7-6520        TCGA-D7-6521        TCGA-D7-6522 
"WBSCR17 WILD-TYPE" "WBSCR17 WILD-TYPE" "WBSCR17 WILD-TYPE" "WBSCR17 WILD-TYPE" 
       TCGA-D7-6524        TCGA-D7-6525        TCGA-D7-6526        TCGA-D7-6527 
"WBSCR17 WILD-TYPE" "WBSCR17 WILD-TYPE" "WBSCR17 WILD-TYPE" "WBSCR17 WILD-TYPE" 
       TCGA-D7-6528        TCGA-D7-6815        TCGA-D7-6817        TCGA-D7-6818 
"WBSCR17 WILD-TYPE" "WBSCR17 WILD-TYPE" "WBSCR17 WILD-TYPE" "WBSCR17 WILD-TYPE" 
       TCGA-D7-6820        TCGA-D7-6822        TCGA-EQ-5647        TCGA-F1-6177 
"WBSCR17 WILD-TYPE" "WBSCR17 WILD-TYPE" "WBSCR17 WILD-TYPE" "WBSCR17 WILD-TYPE" 
       TCGA-F1-6874 
"WBSCR17 WILD-TYPE" 
       TCGA-B7-5816        TCGA-B7-5818        TCGA-BR-6452        TCGA-BR-6455 
"WBSCR17 WILD-TYPE" "WBSCR17 WILD-TYPE"   "WBSCR17 MUTATED" "WBSCR17 WILD-TYPE" 
       TCGA-BR-6457        TCGA-BR-6458        TCGA-BR-6564        TCGA-BR-6565 
"WBSCR17 WILD-TYPE"   "WBSCR17 MUTATED" "WBSCR17 WILD-TYPE" "WBSCR17 WILD-TYPE" 
       TCGA-BR-6566        TCGA-BR-6705        TCGA-BR-6706        TCGA-BR-6707 
"WBSCR17 WILD-TYPE" "WBSCR17 WILD-TYPE" "WBSCR17 WILD-TYPE" "WBSCR17 WILD-TYPE" 
       TCGA-BR-6709        TCGA-BR-6710        TCGA-BR-6801        TCGA-BR-6802 
"WBSCR17 WILD-TYPE" "WBSCR17 WILD-TYPE" "WBSCR17 WILD-TYPE" "WBSCR17 WILD-TYPE" 
       TCGA-BR-6803        TCGA-BR-6852        TCGA-CD-5798        TCGA-CD-5799 
"WBSCR17 WILD-TYPE" "WBSCR17 WILD-TYPE" "WBSCR17 WILD-TYPE" "WBSCR17 WILD-TYPE" 
       TCGA-CD-5800        TCGA-CD-5801        TCGA-CD-5802        TCGA-CD-5803 
"WBSCR17 WILD-TYPE" "WBSCR17 WILD-TYPE" "WBSCR17 WILD-TYPE" "WBSCR17 WILD-TYPE" 
       TCGA-CD-5813        TCGA-CG-4300        TCGA-CG-4301        TCGA-CG-4304 
"WBSCR17 WILD-TYPE" "WBSCR17 WILD-TYPE" "WBSCR17 WILD-TYPE" "WBSCR17 WILD-TYPE" 
       TCGA-CG-4305        TCGA-CG-4306        TCGA-CG-4436        TCGA-CG-4437 
"WBSCR17 WILD-TYPE"   "WBSCR17 MUTATED" "WBSCR17 WILD-TYPE" "WBSCR17 WILD-TYPE" 
       TCGA-CG-4438        TCGA-CG-4440        TCGA-CG-4441        TCGA-CG-4443 
"WBSCR17 WILD-TYPE"   "WBSCR17 MUTATED" "WBSCR17 WILD-TYPE" "WBSCR17 WILD-TYPE" 
       TCGA-CG-4444        TCGA-CG-4449        TCGA-CG-4455        TCGA-CG-4460 
"WBSCR17 WILD-TYPE" "WBSCR17 WILD-TYPE" "WBSCR17 WILD-TYPE" "WBSCR17 WILD-TYPE" 
       TCGA-CG-4462        TCGA-CG-4465        TCGA-CG-4466        TCGA-CG-4469 
"WBSCR17 WILD-TYPE" "WBSCR17 WILD-TYPE" "WBSCR17 WILD-TYPE" "WBSCR17 WILD-TYPE" 
       TCGA-CG-4472        TCGA-CG-4474        TCGA-CG-4477        TCGA-CG-5716 
"WBSCR17 WILD-TYPE" "WBSCR17 WILD-TYPE" "WBSCR17 WILD-TYPE" "WBSCR17 WILD-TYPE" 
       TCGA-CG-5717        TCGA-CG-5718        TCGA-CG-5719        TCGA-CG-5720 
"WBSCR17 WILD-TYPE" "WBSCR17 WILD-TYPE" "WBSCR17 WILD-TYPE" "WBSCR17 WILD-TYPE" 
       TCGA-CG-5721        TCGA-CG-5722        TCGA-CG-5723        TCGA-CG-5724 
  "WBSCR17 MUTATED" "WBSCR17 WILD-TYPE" "WBSCR17 WILD-TYPE" "WBSCR17 WILD-TYPE" 
       TCGA-CG-5725        TCGA-CG-5726        TCGA-CG-5727        TCGA-CG-5728 
"WBSCR17 WILD-TYPE"   "WBSCR17 MUTATED" "WBSCR17 WILD-TYPE"   "WBSCR17 MUTATED" 
       TCGA-CG-5730        TCGA-CG-5732        TCGA-CG-5733        TCGA-CG-5734 
"WBSCR17 WILD-TYPE" "WBSCR17 WILD-TYPE"   "WBSCR17 MUTATED" "WBSCR17 WILD-TYPE" 
       TCGA-D7-5577        TCGA-D7-5578        TCGA-D7-5579        TCGA-D7-6518 
"WBSCR17 WILD-TYPE" "WBSCR17 WILD-TYPE" "WBSCR17 WILD-TYPE" "WBSCR17 WILD-TYPE" 
       TCGA-D7-6519        TCGA-D7-6520        TCGA-D7-6521        TCGA-D7-6522 
"WBSCR17 WILD-TYPE" "WBSCR17 WILD-TYPE" "WBSCR17 WILD-TYPE" "WBSCR17 WILD-TYPE" 
       TCGA-D7-6524        TCGA-D7-6525        TCGA-D7-6526        TCGA-D7-6527 
"WBSCR17 WILD-TYPE" "WBSCR17 WILD-TYPE" "WBSCR17 WILD-TYPE" "WBSCR17 WILD-TYPE" 
       TCGA-D7-6528        TCGA-D7-6815        TCGA-D7-6817        TCGA-D7-6818 
"WBSCR17 WILD-TYPE" "WBSCR17 WILD-TYPE" "WBSCR17 WILD-TYPE" "WBSCR17 WILD-TYPE" 
       TCGA-D7-6820        TCGA-D7-6822        TCGA-EQ-5647        TCGA-F1-6177 
"WBSCR17 WILD-TYPE" "WBSCR17 WILD-TYPE" "WBSCR17 WILD-TYPE" "WBSCR17 WILD-TYPE" 
       TCGA-F1-6874 
"WBSCR17 WILD-TYPE" 
       TCGA-B7-5816        TCGA-B7-5818        TCGA-BR-6452        TCGA-BR-6455 
"WBSCR17 WILD-TYPE" "WBSCR17 WILD-TYPE"   "WBSCR17 MUTATED" "WBSCR17 WILD-TYPE" 
       TCGA-BR-6457        TCGA-BR-6458        TCGA-BR-6564        TCGA-BR-6565 
"WBSCR17 WILD-TYPE"   "WBSCR17 MUTATED" "WBSCR17 WILD-TYPE" "WBSCR17 WILD-TYPE" 
       TCGA-BR-6566        TCGA-BR-6705        TCGA-BR-6706        TCGA-BR-6707 
"WBSCR17 WILD-TYPE" "WBSCR17 WILD-TYPE" "WBSCR17 WILD-TYPE" "WBSCR17 WILD-TYPE" 
       TCGA-BR-6709        TCGA-BR-6710        TCGA-BR-6801        TCGA-BR-6802 
"WBSCR17 WILD-TYPE" "WBSCR17 WILD-TYPE" "WBSCR17 WILD-TYPE" "WBSCR17 WILD-TYPE" 
       TCGA-BR-6803        TCGA-BR-6852        TCGA-CD-5798        TCGA-CD-5799 
"WBSCR17 WILD-TYPE" "WBSCR17 WILD-TYPE" "WBSCR17 WILD-TYPE" "WBSCR17 WILD-TYPE" 
       TCGA-CD-5800        TCGA-CD-5801        TCGA-CD-5802        TCGA-CD-5803 
"WBSCR17 WILD-TYPE" "WBSCR17 WILD-TYPE" "WBSCR17 WILD-TYPE" "WBSCR17 WILD-TYPE" 
       TCGA-CD-5813        TCGA-CG-4300        TCGA-CG-4301        TCGA-CG-4304 
"WBSCR17 WILD-TYPE" "WBSCR17 WILD-TYPE" "WBSCR17 WILD-TYPE" "WBSCR17 WILD-TYPE" 
       TCGA-CG-4305        TCGA-CG-4306        TCGA-CG-4436        TCGA-CG-4437 
"WBSCR17 WILD-TYPE"   "WBSCR17 MUTATED" "WBSCR17 WILD-TYPE" "WBSCR17 WILD-TYPE" 
       TCGA-CG-4438        TCGA-CG-4440        TCGA-CG-4441        TCGA-CG-4443 
"WBSCR17 WILD-TYPE"   "WBSCR17 MUTATED" "WBSCR17 WILD-TYPE" "WBSCR17 WILD-TYPE" 
       TCGA-CG-4444        TCGA-CG-4449        TCGA-CG-4455        TCGA-CG-4460 
"WBSCR17 WILD-TYPE" "WBSCR17 WILD-TYPE" "WBSCR17 WILD-TYPE" "WBSCR17 WILD-TYPE" 
       TCGA-CG-4462        TCGA-CG-4465        TCGA-CG-4466        TCGA-CG-4469 
"WBSCR17 WILD-TYPE" "WBSCR17 WILD-TYPE" "WBSCR17 WILD-TYPE" "WBSCR17 WILD-TYPE" 
       TCGA-CG-4472        TCGA-CG-4474        TCGA-CG-4477        TCGA-CG-5716 
"WBSCR17 WILD-TYPE" "WBSCR17 WILD-TYPE" "WBSCR17 WILD-TYPE" "WBSCR17 WILD-TYPE" 
       TCGA-CG-5717        TCGA-CG-5718        TCGA-CG-5719        TCGA-CG-5720 
"WBSCR17 WILD-TYPE" "WBSCR17 WILD-TYPE" "WBSCR17 WILD-TYPE" "WBSCR17 WILD-TYPE" 
       TCGA-CG-5721        TCGA-CG-5722        TCGA-CG-5723        TCGA-CG-5724 
  "WBSCR17 MUTATED" "WBSCR17 WILD-TYPE" "WBSCR17 WILD-TYPE" "WBSCR17 WILD-TYPE" 
       TCGA-CG-5725        TCGA-CG-5726        TCGA-CG-5727        TCGA-CG-5728 
"WBSCR17 WILD-TYPE"   "WBSCR17 MUTATED" "WBSCR17 WILD-TYPE"   "WBSCR17 MUTATED" 
       TCGA-CG-5730        TCGA-CG-5732        TCGA-CG-5733        TCGA-CG-5734 
"WBSCR17 WILD-TYPE" "WBSCR17 WILD-TYPE"   "WBSCR17 MUTATED" "WBSCR17 WILD-TYPE" 
       TCGA-D7-5577        TCGA-D7-5578        TCGA-D7-5579        TCGA-D7-6518 
"WBSCR17 WILD-TYPE" "WBSCR17 WILD-TYPE" "WBSCR17 WILD-TYPE" "WBSCR17 WILD-TYPE" 
       TCGA-D7-6519        TCGA-D7-6520        TCGA-D7-6521        TCGA-D7-6522 
"WBSCR17 WILD-TYPE" "WBSCR17 WILD-TYPE" "WBSCR17 WILD-TYPE" "WBSCR17 WILD-TYPE" 
       TCGA-D7-6524        TCGA-D7-6525        TCGA-D7-6526        TCGA-D7-6527 
"WBSCR17 WILD-TYPE" "WBSCR17 WILD-TYPE" "WBSCR17 WILD-TYPE" "WBSCR17 WILD-TYPE" 
       TCGA-D7-6528        TCGA-D7-6815        TCGA-D7-6817        TCGA-D7-6818 
"WBSCR17 WILD-TYPE" "WBSCR17 WILD-TYPE" "WBSCR17 WILD-TYPE" "WBSCR17 WILD-TYPE" 
       TCGA-D7-6820        TCGA-D7-6822        TCGA-EQ-5647        TCGA-F1-6177 
"WBSCR17 WILD-TYPE" "WBSCR17 WILD-TYPE" "WBSCR17 WILD-TYPE" "WBSCR17 WILD-TYPE" 
       TCGA-F1-6874 
"WBSCR17 WILD-TYPE" 
[1] "hr=" "2.5"
D23V2, continuous
D23V3, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  WBSCR17 MUTATED      6    6
  WBSCR17 WILD-TYPE   40   64
        clus
vv       WBSCR17 MUTATED WBSCR17 WILD-TYPE
  FEMALE               6                40
  MALE                 6                64
D23V4, multiclass
D23V5, multiclass
    clus
vv   WBSCR17 MUTATED WBSCR17 WILD-TYPE
  T1               1                 3
  T2               3                43
  T3               5                36
  T4               1                14
D23V6, multiclass
    clus
vv   WBSCR17 MUTATED WBSCR17 WILD-TYPE
  N0               3                32
  N1               5                34
  N2               2                17
  N3               1                11
D23V7, multiclass
    clus
vv   WBSCR17 MUTATED WBSCR17 WILD-TYPE
  M0               9                90
  M1               2                11
  MX               1                 3
D23V8, multiclass
     clus
vv    WBSCR17 MUTATED WBSCR17 WILD-TYPE
  I                 2                16
  II                3                29
  III               2                27
  IV                3                18

Clustering(24) Variable = OR4C16 MUTATION ANALYSIS
D24V1, survival
                  sevent
clus2               0  1
  OR4C16 MUTATED    6  1
  OR4C16 WILD-TYPE 65 13
  OR4C16 MUTATED OR4C16 WILD-TYPE 
               7               78 
  OR4C16 MUTATED OR4C16 WILD-TYPE 
               1               13 
$`OR4C16 MUTATED`
TCGA-BR-6452 TCGA-CG-4443 TCGA-CG-4444 TCGA-CG-4469 TCGA-CG-4477 TCGA-CG-5721 
        0.95        29.98        47.05         7.07         1.02         5.98 
TCGA-D7-5578 
        3.58 

$`OR4C16 WILD-TYPE`
TCGA-B7-5816 TCGA-B7-5818 TCGA-BR-6455 TCGA-BR-6457 TCGA-BR-6458 TCGA-BR-6564 
        5.62         0.10         1.41         1.35         1.35         0.82 
TCGA-BR-6565 TCGA-BR-6566 TCGA-BR-6705 TCGA-BR-6706 TCGA-BR-6707 TCGA-BR-6709 
        0.62         0.62         1.71         2.17         0.99         1.22 
TCGA-BR-6710 TCGA-BR-6801 TCGA-BR-6802 TCGA-BR-6803 TCGA-BR-6852 TCGA-CD-5798 
        0.66         1.12         0.76         0.66         0.26         0.82 
TCGA-CD-5799 TCGA-CD-5800 TCGA-CD-5801 TCGA-CD-5802 TCGA-CD-5803 TCGA-CD-5813 
        0.69         0.36         0.49         0.30         0.07         0.39 
TCGA-CG-4300 TCGA-CG-4301 TCGA-CG-4304 TCGA-CG-4305 TCGA-CG-4306 TCGA-CG-4436 
       20.02         3.02        27.02        15.95         1.02        52.96 
TCGA-CG-4437 TCGA-CG-4438 TCGA-CG-4440 TCGA-CG-4441 TCGA-CG-4449 TCGA-CG-4455 
        8.05        54.05         4.01        14.01        19.07        12.03 
TCGA-CG-4460 TCGA-CG-4462 TCGA-CG-4465 TCGA-CG-4466 TCGA-CG-4472 TCGA-CG-4474 
       21.99         1.02         8.98        18.94        12.00         1.02 
TCGA-CG-5716 TCGA-CG-5717 TCGA-CG-5718 TCGA-CG-5719 TCGA-CG-5720 TCGA-CG-5722 
        1.02         6.94         1.02         1.02         0.99         0.95 
TCGA-CG-5723 TCGA-CG-5724 TCGA-CG-5725 TCGA-CG-5726 TCGA-CG-5727 TCGA-CG-5728 
       70.06        12.03        15.02        28.96        31.04        65.10 
TCGA-CG-5730 TCGA-CG-5732 TCGA-CG-5733 TCGA-CG-5734 TCGA-D7-5577 TCGA-D7-5579 
        4.01        55.04        21.07         7.99         8.65         4.54 
TCGA-D7-6518 TCGA-D7-6519 TCGA-D7-6520 TCGA-D7-6521 TCGA-D7-6522 TCGA-D7-6524 
        9.80        15.65         9.63         8.19         6.90         0.69 
TCGA-D7-6525 TCGA-D7-6526 TCGA-D7-6527 TCGA-D7-6528 TCGA-D7-6815 TCGA-D7-6817 
        5.95         6.61         4.14         1.68         3.65         4.70 
TCGA-D7-6818 TCGA-D7-6820 TCGA-D7-6822 TCGA-EQ-5647 TCGA-F1-6177 TCGA-F1-6874 
        4.04         2.93         4.27         0.62         6.54         2.01 

  OR4C16 MUTATED OR4C16 WILD-TYPE 
            0.95             0.07 
  OR4C16 MUTATED OR4C16 WILD-TYPE 
           47.05            70.06 
  OR4C16 MUTATED OR4C16 WILD-TYPE 
            5.98             4.01 
[1] "0.9 - 47.0 (6.0)" "0.1 - 70.1 (4.0)"
      TCGA-B7-5816       TCGA-B7-5818       TCGA-BR-6452       TCGA-BR-6455 
"OR4C16 WILD-TYPE" "OR4C16 WILD-TYPE"   "OR4C16 MUTATED" "OR4C16 WILD-TYPE" 
      TCGA-BR-6457       TCGA-BR-6458       TCGA-BR-6564       TCGA-BR-6565 
"OR4C16 WILD-TYPE" "OR4C16 WILD-TYPE" "OR4C16 WILD-TYPE" "OR4C16 WILD-TYPE" 
      TCGA-BR-6566       TCGA-BR-6705       TCGA-BR-6706       TCGA-BR-6707 
"OR4C16 WILD-TYPE" "OR4C16 WILD-TYPE" "OR4C16 WILD-TYPE" "OR4C16 WILD-TYPE" 
      TCGA-BR-6709       TCGA-BR-6710       TCGA-BR-6801       TCGA-BR-6802 
"OR4C16 WILD-TYPE" "OR4C16 WILD-TYPE" "OR4C16 WILD-TYPE" "OR4C16 WILD-TYPE" 
      TCGA-BR-6803       TCGA-BR-6852       TCGA-CD-5798       TCGA-CD-5799 
"OR4C16 WILD-TYPE" "OR4C16 WILD-TYPE" "OR4C16 WILD-TYPE" "OR4C16 WILD-TYPE" 
      TCGA-CD-5800       TCGA-CD-5801       TCGA-CD-5802       TCGA-CD-5803 
"OR4C16 WILD-TYPE" "OR4C16 WILD-TYPE" "OR4C16 WILD-TYPE" "OR4C16 WILD-TYPE" 
      TCGA-CD-5813       TCGA-CG-4300       TCGA-CG-4301       TCGA-CG-4304 
"OR4C16 WILD-TYPE" "OR4C16 WILD-TYPE" "OR4C16 WILD-TYPE" "OR4C16 WILD-TYPE" 
      TCGA-CG-4305       TCGA-CG-4306       TCGA-CG-4436       TCGA-CG-4437 
"OR4C16 WILD-TYPE" "OR4C16 WILD-TYPE" "OR4C16 WILD-TYPE" "OR4C16 WILD-TYPE" 
      TCGA-CG-4438       TCGA-CG-4440       TCGA-CG-4441       TCGA-CG-4443 
"OR4C16 WILD-TYPE" "OR4C16 WILD-TYPE" "OR4C16 WILD-TYPE"   "OR4C16 MUTATED" 
      TCGA-CG-4444       TCGA-CG-4449       TCGA-CG-4455       TCGA-CG-4460 
  "OR4C16 MUTATED" "OR4C16 WILD-TYPE" "OR4C16 WILD-TYPE" "OR4C16 WILD-TYPE" 
      TCGA-CG-4462       TCGA-CG-4465       TCGA-CG-4466       TCGA-CG-4469 
"OR4C16 WILD-TYPE" "OR4C16 WILD-TYPE" "OR4C16 WILD-TYPE"   "OR4C16 MUTATED" 
      TCGA-CG-4472       TCGA-CG-4474       TCGA-CG-4477       TCGA-CG-5716 
"OR4C16 WILD-TYPE" "OR4C16 WILD-TYPE"   "OR4C16 MUTATED" "OR4C16 WILD-TYPE" 
      TCGA-CG-5717       TCGA-CG-5718       TCGA-CG-5719       TCGA-CG-5720 
"OR4C16 WILD-TYPE" "OR4C16 WILD-TYPE" "OR4C16 WILD-TYPE" "OR4C16 WILD-TYPE" 
      TCGA-CG-5721       TCGA-CG-5722       TCGA-CG-5723       TCGA-CG-5724 
  "OR4C16 MUTATED" "OR4C16 WILD-TYPE" "OR4C16 WILD-TYPE" "OR4C16 WILD-TYPE" 
      TCGA-CG-5725       TCGA-CG-5726       TCGA-CG-5727       TCGA-CG-5728 
"OR4C16 WILD-TYPE" "OR4C16 WILD-TYPE" "OR4C16 WILD-TYPE" "OR4C16 WILD-TYPE" 
      TCGA-CG-5730       TCGA-CG-5732       TCGA-CG-5733       TCGA-CG-5734 
"OR4C16 WILD-TYPE" "OR4C16 WILD-TYPE" "OR4C16 WILD-TYPE" "OR4C16 WILD-TYPE" 
      TCGA-D7-5577       TCGA-D7-5578       TCGA-D7-5579       TCGA-D7-6518 
"OR4C16 WILD-TYPE"   "OR4C16 MUTATED" "OR4C16 WILD-TYPE" "OR4C16 WILD-TYPE" 
      TCGA-D7-6519       TCGA-D7-6520       TCGA-D7-6521       TCGA-D7-6522 
"OR4C16 WILD-TYPE" "OR4C16 WILD-TYPE" "OR4C16 WILD-TYPE" "OR4C16 WILD-TYPE" 
      TCGA-D7-6524       TCGA-D7-6525       TCGA-D7-6526       TCGA-D7-6527 
"OR4C16 WILD-TYPE" "OR4C16 WILD-TYPE" "OR4C16 WILD-TYPE" "OR4C16 WILD-TYPE" 
      TCGA-D7-6528       TCGA-D7-6815       TCGA-D7-6817       TCGA-D7-6818 
"OR4C16 WILD-TYPE" "OR4C16 WILD-TYPE" "OR4C16 WILD-TYPE" "OR4C16 WILD-TYPE" 
      TCGA-D7-6820       TCGA-D7-6822       TCGA-EQ-5647       TCGA-F1-6177 
"OR4C16 WILD-TYPE" "OR4C16 WILD-TYPE" "OR4C16 WILD-TYPE" "OR4C16 WILD-TYPE" 
      TCGA-F1-6874 
"OR4C16 WILD-TYPE" 
      TCGA-B7-5816       TCGA-B7-5818       TCGA-BR-6452       TCGA-BR-6455 
"OR4C16 WILD-TYPE" "OR4C16 WILD-TYPE"   "OR4C16 MUTATED" "OR4C16 WILD-TYPE" 
      TCGA-BR-6457       TCGA-BR-6458       TCGA-BR-6564       TCGA-BR-6565 
"OR4C16 WILD-TYPE" "OR4C16 WILD-TYPE" "OR4C16 WILD-TYPE" "OR4C16 WILD-TYPE" 
      TCGA-BR-6566       TCGA-BR-6705       TCGA-BR-6706       TCGA-BR-6707 
"OR4C16 WILD-TYPE" "OR4C16 WILD-TYPE" "OR4C16 WILD-TYPE" "OR4C16 WILD-TYPE" 
      TCGA-BR-6709       TCGA-BR-6710       TCGA-BR-6801       TCGA-BR-6802 
"OR4C16 WILD-TYPE" "OR4C16 WILD-TYPE" "OR4C16 WILD-TYPE" "OR4C16 WILD-TYPE" 
      TCGA-BR-6803       TCGA-BR-6852       TCGA-CD-5798       TCGA-CD-5799 
"OR4C16 WILD-TYPE" "OR4C16 WILD-TYPE" "OR4C16 WILD-TYPE" "OR4C16 WILD-TYPE" 
      TCGA-CD-5800       TCGA-CD-5801       TCGA-CD-5802       TCGA-CD-5803 
"OR4C16 WILD-TYPE" "OR4C16 WILD-TYPE" "OR4C16 WILD-TYPE" "OR4C16 WILD-TYPE" 
      TCGA-CD-5813       TCGA-CG-4300       TCGA-CG-4301       TCGA-CG-4304 
"OR4C16 WILD-TYPE" "OR4C16 WILD-TYPE" "OR4C16 WILD-TYPE" "OR4C16 WILD-TYPE" 
      TCGA-CG-4305       TCGA-CG-4306       TCGA-CG-4436       TCGA-CG-4437 
"OR4C16 WILD-TYPE" "OR4C16 WILD-TYPE" "OR4C16 WILD-TYPE" "OR4C16 WILD-TYPE" 
      TCGA-CG-4438       TCGA-CG-4440       TCGA-CG-4441       TCGA-CG-4443 
"OR4C16 WILD-TYPE" "OR4C16 WILD-TYPE" "OR4C16 WILD-TYPE"   "OR4C16 MUTATED" 
      TCGA-CG-4444       TCGA-CG-4449       TCGA-CG-4455       TCGA-CG-4460 
  "OR4C16 MUTATED" "OR4C16 WILD-TYPE" "OR4C16 WILD-TYPE" "OR4C16 WILD-TYPE" 
      TCGA-CG-4462       TCGA-CG-4465       TCGA-CG-4466       TCGA-CG-4469 
"OR4C16 WILD-TYPE" "OR4C16 WILD-TYPE" "OR4C16 WILD-TYPE"   "OR4C16 MUTATED" 
      TCGA-CG-4472       TCGA-CG-4474       TCGA-CG-4477       TCGA-CG-5716 
"OR4C16 WILD-TYPE" "OR4C16 WILD-TYPE"   "OR4C16 MUTATED" "OR4C16 WILD-TYPE" 
      TCGA-CG-5717       TCGA-CG-5718       TCGA-CG-5719       TCGA-CG-5720 
"OR4C16 WILD-TYPE" "OR4C16 WILD-TYPE" "OR4C16 WILD-TYPE" "OR4C16 WILD-TYPE" 
      TCGA-CG-5721       TCGA-CG-5722       TCGA-CG-5723       TCGA-CG-5724 
  "OR4C16 MUTATED" "OR4C16 WILD-TYPE" "OR4C16 WILD-TYPE" "OR4C16 WILD-TYPE" 
      TCGA-CG-5725       TCGA-CG-5726       TCGA-CG-5727       TCGA-CG-5728 
"OR4C16 WILD-TYPE" "OR4C16 WILD-TYPE" "OR4C16 WILD-TYPE" "OR4C16 WILD-TYPE" 
      TCGA-CG-5730       TCGA-CG-5732       TCGA-CG-5733       TCGA-CG-5734 
"OR4C16 WILD-TYPE" "OR4C16 WILD-TYPE" "OR4C16 WILD-TYPE" "OR4C16 WILD-TYPE" 
      TCGA-D7-5577       TCGA-D7-5578       TCGA-D7-5579       TCGA-D7-6518 
"OR4C16 WILD-TYPE"   "OR4C16 MUTATED" "OR4C16 WILD-TYPE" "OR4C16 WILD-TYPE" 
      TCGA-D7-6519       TCGA-D7-6520       TCGA-D7-6521       TCGA-D7-6522 
"OR4C16 WILD-TYPE" "OR4C16 WILD-TYPE" "OR4C16 WILD-TYPE" "OR4C16 WILD-TYPE" 
      TCGA-D7-6524       TCGA-D7-6525       TCGA-D7-6526       TCGA-D7-6527 
"OR4C16 WILD-TYPE" "OR4C16 WILD-TYPE" "OR4C16 WILD-TYPE" "OR4C16 WILD-TYPE" 
      TCGA-D7-6528       TCGA-D7-6815       TCGA-D7-6817       TCGA-D7-6818 
"OR4C16 WILD-TYPE" "OR4C16 WILD-TYPE" "OR4C16 WILD-TYPE" "OR4C16 WILD-TYPE" 
      TCGA-D7-6820       TCGA-D7-6822       TCGA-EQ-5647       TCGA-F1-6177 
"OR4C16 WILD-TYPE" "OR4C16 WILD-TYPE" "OR4C16 WILD-TYPE" "OR4C16 WILD-TYPE" 
      TCGA-F1-6874 
"OR4C16 WILD-TYPE" 
      TCGA-B7-5816       TCGA-B7-5818       TCGA-BR-6452       TCGA-BR-6455 
"OR4C16 WILD-TYPE" "OR4C16 WILD-TYPE"   "OR4C16 MUTATED" "OR4C16 WILD-TYPE" 
      TCGA-BR-6457       TCGA-BR-6458       TCGA-BR-6564       TCGA-BR-6565 
"OR4C16 WILD-TYPE" "OR4C16 WILD-TYPE" "OR4C16 WILD-TYPE" "OR4C16 WILD-TYPE" 
      TCGA-BR-6566       TCGA-BR-6705       TCGA-BR-6706       TCGA-BR-6707 
"OR4C16 WILD-TYPE" "OR4C16 WILD-TYPE" "OR4C16 WILD-TYPE" "OR4C16 WILD-TYPE" 
      TCGA-BR-6709       TCGA-BR-6710       TCGA-BR-6801       TCGA-BR-6802 
"OR4C16 WILD-TYPE" "OR4C16 WILD-TYPE" "OR4C16 WILD-TYPE" "OR4C16 WILD-TYPE" 
      TCGA-BR-6803       TCGA-BR-6852       TCGA-CD-5798       TCGA-CD-5799 
"OR4C16 WILD-TYPE" "OR4C16 WILD-TYPE" "OR4C16 WILD-TYPE" "OR4C16 WILD-TYPE" 
      TCGA-CD-5800       TCGA-CD-5801       TCGA-CD-5802       TCGA-CD-5803 
"OR4C16 WILD-TYPE" "OR4C16 WILD-TYPE" "OR4C16 WILD-TYPE" "OR4C16 WILD-TYPE" 
      TCGA-CD-5813       TCGA-CG-4300       TCGA-CG-4301       TCGA-CG-4304 
"OR4C16 WILD-TYPE" "OR4C16 WILD-TYPE" "OR4C16 WILD-TYPE" "OR4C16 WILD-TYPE" 
      TCGA-CG-4305       TCGA-CG-4306       TCGA-CG-4436       TCGA-CG-4437 
"OR4C16 WILD-TYPE" "OR4C16 WILD-TYPE" "OR4C16 WILD-TYPE" "OR4C16 WILD-TYPE" 
      TCGA-CG-4438       TCGA-CG-4440       TCGA-CG-4441       TCGA-CG-4443 
"OR4C16 WILD-TYPE" "OR4C16 WILD-TYPE" "OR4C16 WILD-TYPE"   "OR4C16 MUTATED" 
      TCGA-CG-4444       TCGA-CG-4449       TCGA-CG-4455       TCGA-CG-4460 
  "OR4C16 MUTATED" "OR4C16 WILD-TYPE" "OR4C16 WILD-TYPE" "OR4C16 WILD-TYPE" 
      TCGA-CG-4462       TCGA-CG-4465       TCGA-CG-4466       TCGA-CG-4469 
"OR4C16 WILD-TYPE" "OR4C16 WILD-TYPE" "OR4C16 WILD-TYPE"   "OR4C16 MUTATED" 
      TCGA-CG-4472       TCGA-CG-4474       TCGA-CG-4477       TCGA-CG-5716 
"OR4C16 WILD-TYPE" "OR4C16 WILD-TYPE"   "OR4C16 MUTATED" "OR4C16 WILD-TYPE" 
      TCGA-CG-5717       TCGA-CG-5718       TCGA-CG-5719       TCGA-CG-5720 
"OR4C16 WILD-TYPE" "OR4C16 WILD-TYPE" "OR4C16 WILD-TYPE" "OR4C16 WILD-TYPE" 
      TCGA-CG-5721       TCGA-CG-5722       TCGA-CG-5723       TCGA-CG-5724 
  "OR4C16 MUTATED" "OR4C16 WILD-TYPE" "OR4C16 WILD-TYPE" "OR4C16 WILD-TYPE" 
      TCGA-CG-5725       TCGA-CG-5726       TCGA-CG-5727       TCGA-CG-5728 
"OR4C16 WILD-TYPE" "OR4C16 WILD-TYPE" "OR4C16 WILD-TYPE" "OR4C16 WILD-TYPE" 
      TCGA-CG-5730       TCGA-CG-5732       TCGA-CG-5733       TCGA-CG-5734 
"OR4C16 WILD-TYPE" "OR4C16 WILD-TYPE" "OR4C16 WILD-TYPE" "OR4C16 WILD-TYPE" 
      TCGA-D7-5577       TCGA-D7-5578       TCGA-D7-5579       TCGA-D7-6518 
"OR4C16 WILD-TYPE"   "OR4C16 MUTATED" "OR4C16 WILD-TYPE" "OR4C16 WILD-TYPE" 
      TCGA-D7-6519       TCGA-D7-6520       TCGA-D7-6521       TCGA-D7-6522 
"OR4C16 WILD-TYPE" "OR4C16 WILD-TYPE" "OR4C16 WILD-TYPE" "OR4C16 WILD-TYPE" 
      TCGA-D7-6524       TCGA-D7-6525       TCGA-D7-6526       TCGA-D7-6527 
"OR4C16 WILD-TYPE" "OR4C16 WILD-TYPE" "OR4C16 WILD-TYPE" "OR4C16 WILD-TYPE" 
      TCGA-D7-6528       TCGA-D7-6815       TCGA-D7-6817       TCGA-D7-6818 
"OR4C16 WILD-TYPE" "OR4C16 WILD-TYPE" "OR4C16 WILD-TYPE" "OR4C16 WILD-TYPE" 
      TCGA-D7-6820       TCGA-D7-6822       TCGA-EQ-5647       TCGA-F1-6177 
"OR4C16 WILD-TYPE" "OR4C16 WILD-TYPE" "OR4C16 WILD-TYPE" "OR4C16 WILD-TYPE" 
      TCGA-F1-6874 
"OR4C16 WILD-TYPE" 
[1] "hr=" "1.7"
D24V2, continuous
D24V3, binary
[1] "tbl2"
                  cls
clus               [,1] [,2]
  OR4C16 MUTATED      2    6
  OR4C16 WILD-TYPE   44   64
        clus
vv       OR4C16 MUTATED OR4C16 WILD-TYPE
  FEMALE              2               44
  MALE                6               64
D24V4, multiclass
D24V5, multiclass
    clus
vv   OR4C16 MUTATED OR4C16 WILD-TYPE
  T1              1                3
  T2              2               44
  T3              3               38
  T4              1               14
D24V6, multiclass
    clus
vv   OR4C16 MUTATED OR4C16 WILD-TYPE
  N0              3               32
  N1              2               37
  N2              2               17
  N3              1               11
D24V7, multiclass
    clus
vv   OR4C16 MUTATED OR4C16 WILD-TYPE
  M0              8               91
  M1              0               13
  MX              0                4
D24V8, multiclass
     clus
vv    OR4C16 MUTATED OR4C16 WILD-TYPE
  I                2               16
  II               2               30
  III              1               28
  IV               2               19

Clustering(25) Variable = SMAD4 MUTATION ANALYSIS
D25V1, survival
                 sevent
clus2              0  1
  SMAD4 MUTATED    3  1
  SMAD4 WILD-TYPE 68 13
  SMAD4 MUTATED SMAD4 WILD-TYPE 
              4              81 
  SMAD4 MUTATED SMAD4 WILD-TYPE 
              1              13 
$`SMAD4 MUTATED`
TCGA-CD-5799 TCGA-CG-4469 TCGA-CG-5719 TCGA-D7-6815 
        0.69         7.07         1.02         3.65 

$`SMAD4 WILD-TYPE`
TCGA-B7-5816 TCGA-B7-5818 TCGA-BR-6452 TCGA-BR-6455 TCGA-BR-6457 TCGA-BR-6458 
        5.62         0.10         0.95         1.41         1.35         1.35 
TCGA-BR-6564 TCGA-BR-6565 TCGA-BR-6566 TCGA-BR-6705 TCGA-BR-6706 TCGA-BR-6707 
        0.82         0.62         0.62         1.71         2.17         0.99 
TCGA-BR-6709 TCGA-BR-6710 TCGA-BR-6801 TCGA-BR-6802 TCGA-BR-6803 TCGA-BR-6852 
        1.22         0.66         1.12         0.76         0.66         0.26 
TCGA-CD-5798 TCGA-CD-5800 TCGA-CD-5801 TCGA-CD-5802 TCGA-CD-5803 TCGA-CD-5813 
        0.82         0.36         0.49         0.30         0.07         0.39 
TCGA-CG-4300 TCGA-CG-4301 TCGA-CG-4304 TCGA-CG-4305 TCGA-CG-4306 TCGA-CG-4436 
       20.02         3.02        27.02        15.95         1.02        52.96 
TCGA-CG-4437 TCGA-CG-4438 TCGA-CG-4440 TCGA-CG-4441 TCGA-CG-4443 TCGA-CG-4444 
        8.05        54.05         4.01        14.01        29.98        47.05 
TCGA-CG-4449 TCGA-CG-4455 TCGA-CG-4460 TCGA-CG-4462 TCGA-CG-4465 TCGA-CG-4466 
       19.07        12.03        21.99         1.02         8.98        18.94 
TCGA-CG-4472 TCGA-CG-4474 TCGA-CG-4477 TCGA-CG-5716 TCGA-CG-5717 TCGA-CG-5718 
       12.00         1.02         1.02         1.02         6.94         1.02 
TCGA-CG-5720 TCGA-CG-5721 TCGA-CG-5722 TCGA-CG-5723 TCGA-CG-5724 TCGA-CG-5725 
        0.99         5.98         0.95        70.06        12.03        15.02 
TCGA-CG-5726 TCGA-CG-5727 TCGA-CG-5728 TCGA-CG-5730 TCGA-CG-5732 TCGA-CG-5733 
       28.96        31.04        65.10         4.01        55.04        21.07 
TCGA-CG-5734 TCGA-D7-5577 TCGA-D7-5578 TCGA-D7-5579 TCGA-D7-6518 TCGA-D7-6519 
        7.99         8.65         3.58         4.54         9.80        15.65 
TCGA-D7-6520 TCGA-D7-6521 TCGA-D7-6522 TCGA-D7-6524 TCGA-D7-6525 TCGA-D7-6526 
        9.63         8.19         6.90         0.69         5.95         6.61 
TCGA-D7-6527 TCGA-D7-6528 TCGA-D7-6817 TCGA-D7-6818 TCGA-D7-6820 TCGA-D7-6822 
        4.14         1.68         4.70         4.04         2.93         4.27 
TCGA-EQ-5647 TCGA-F1-6177 TCGA-F1-6874 
        0.62         6.54         2.01 

  SMAD4 MUTATED SMAD4 WILD-TYPE 
           0.69            0.07 
  SMAD4 MUTATED SMAD4 WILD-TYPE 
           7.07           70.06 
  SMAD4 MUTATED SMAD4 WILD-TYPE 
          2.335           4.040 
[1] "0.7 - 7.1 (2.3)"  "0.1 - 70.1 (4.0)"
     TCGA-B7-5816      TCGA-B7-5818      TCGA-BR-6452      TCGA-BR-6455 
"SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" 
     TCGA-BR-6457      TCGA-BR-6458      TCGA-BR-6564      TCGA-BR-6565 
"SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" 
     TCGA-BR-6566      TCGA-BR-6705      TCGA-BR-6706      TCGA-BR-6707 
"SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" 
     TCGA-BR-6709      TCGA-BR-6710      TCGA-BR-6801      TCGA-BR-6802 
"SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" 
     TCGA-BR-6803      TCGA-BR-6852      TCGA-CD-5798      TCGA-CD-5799 
"SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE"   "SMAD4 MUTATED" 
     TCGA-CD-5800      TCGA-CD-5801      TCGA-CD-5802      TCGA-CD-5803 
"SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" 
     TCGA-CD-5813      TCGA-CG-4300      TCGA-CG-4301      TCGA-CG-4304 
"SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" 
     TCGA-CG-4305      TCGA-CG-4306      TCGA-CG-4436      TCGA-CG-4437 
"SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" 
     TCGA-CG-4438      TCGA-CG-4440      TCGA-CG-4441      TCGA-CG-4443 
"SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" 
     TCGA-CG-4444      TCGA-CG-4449      TCGA-CG-4455      TCGA-CG-4460 
"SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" 
     TCGA-CG-4462      TCGA-CG-4465      TCGA-CG-4466      TCGA-CG-4469 
"SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE"   "SMAD4 MUTATED" 
     TCGA-CG-4472      TCGA-CG-4474      TCGA-CG-4477      TCGA-CG-5716 
"SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" 
     TCGA-CG-5717      TCGA-CG-5718      TCGA-CG-5719      TCGA-CG-5720 
"SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE"   "SMAD4 MUTATED" "SMAD4 WILD-TYPE" 
     TCGA-CG-5721      TCGA-CG-5722      TCGA-CG-5723      TCGA-CG-5724 
"SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" 
     TCGA-CG-5725      TCGA-CG-5726      TCGA-CG-5727      TCGA-CG-5728 
"SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" 
     TCGA-CG-5730      TCGA-CG-5732      TCGA-CG-5733      TCGA-CG-5734 
"SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" 
     TCGA-D7-5577      TCGA-D7-5578      TCGA-D7-5579      TCGA-D7-6518 
"SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" 
     TCGA-D7-6519      TCGA-D7-6520      TCGA-D7-6521      TCGA-D7-6522 
"SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" 
     TCGA-D7-6524      TCGA-D7-6525      TCGA-D7-6526      TCGA-D7-6527 
"SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" 
     TCGA-D7-6528      TCGA-D7-6815      TCGA-D7-6817      TCGA-D7-6818 
"SMAD4 WILD-TYPE"   "SMAD4 MUTATED" "SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" 
     TCGA-D7-6820      TCGA-D7-6822      TCGA-EQ-5647      TCGA-F1-6177 
"SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" 
     TCGA-F1-6874 
"SMAD4 WILD-TYPE" 
     TCGA-B7-5816      TCGA-B7-5818      TCGA-BR-6452      TCGA-BR-6455 
"SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" 
     TCGA-BR-6457      TCGA-BR-6458      TCGA-BR-6564      TCGA-BR-6565 
"SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" 
     TCGA-BR-6566      TCGA-BR-6705      TCGA-BR-6706      TCGA-BR-6707 
"SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" 
     TCGA-BR-6709      TCGA-BR-6710      TCGA-BR-6801      TCGA-BR-6802 
"SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" 
     TCGA-BR-6803      TCGA-BR-6852      TCGA-CD-5798      TCGA-CD-5799 
"SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE"   "SMAD4 MUTATED" 
     TCGA-CD-5800      TCGA-CD-5801      TCGA-CD-5802      TCGA-CD-5803 
"SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" 
     TCGA-CD-5813      TCGA-CG-4300      TCGA-CG-4301      TCGA-CG-4304 
"SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" 
     TCGA-CG-4305      TCGA-CG-4306      TCGA-CG-4436      TCGA-CG-4437 
"SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" 
     TCGA-CG-4438      TCGA-CG-4440      TCGA-CG-4441      TCGA-CG-4443 
"SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" 
     TCGA-CG-4444      TCGA-CG-4449      TCGA-CG-4455      TCGA-CG-4460 
"SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" 
     TCGA-CG-4462      TCGA-CG-4465      TCGA-CG-4466      TCGA-CG-4469 
"SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE"   "SMAD4 MUTATED" 
     TCGA-CG-4472      TCGA-CG-4474      TCGA-CG-4477      TCGA-CG-5716 
"SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" 
     TCGA-CG-5717      TCGA-CG-5718      TCGA-CG-5719      TCGA-CG-5720 
"SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE"   "SMAD4 MUTATED" "SMAD4 WILD-TYPE" 
     TCGA-CG-5721      TCGA-CG-5722      TCGA-CG-5723      TCGA-CG-5724 
"SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" 
     TCGA-CG-5725      TCGA-CG-5726      TCGA-CG-5727      TCGA-CG-5728 
"SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" 
     TCGA-CG-5730      TCGA-CG-5732      TCGA-CG-5733      TCGA-CG-5734 
"SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" 
     TCGA-D7-5577      TCGA-D7-5578      TCGA-D7-5579      TCGA-D7-6518 
"SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" 
     TCGA-D7-6519      TCGA-D7-6520      TCGA-D7-6521      TCGA-D7-6522 
"SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" 
     TCGA-D7-6524      TCGA-D7-6525      TCGA-D7-6526      TCGA-D7-6527 
"SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" 
     TCGA-D7-6528      TCGA-D7-6815      TCGA-D7-6817      TCGA-D7-6818 
"SMAD4 WILD-TYPE"   "SMAD4 MUTATED" "SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" 
     TCGA-D7-6820      TCGA-D7-6822      TCGA-EQ-5647      TCGA-F1-6177 
"SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" 
     TCGA-F1-6874 
"SMAD4 WILD-TYPE" 
     TCGA-B7-5816      TCGA-B7-5818      TCGA-BR-6452      TCGA-BR-6455 
"SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" 
     TCGA-BR-6457      TCGA-BR-6458      TCGA-BR-6564      TCGA-BR-6565 
"SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" 
     TCGA-BR-6566      TCGA-BR-6705      TCGA-BR-6706      TCGA-BR-6707 
"SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" 
     TCGA-BR-6709      TCGA-BR-6710      TCGA-BR-6801      TCGA-BR-6802 
"SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" 
     TCGA-BR-6803      TCGA-BR-6852      TCGA-CD-5798      TCGA-CD-5799 
"SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE"   "SMAD4 MUTATED" 
     TCGA-CD-5800      TCGA-CD-5801      TCGA-CD-5802      TCGA-CD-5803 
"SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" 
     TCGA-CD-5813      TCGA-CG-4300      TCGA-CG-4301      TCGA-CG-4304 
"SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" 
     TCGA-CG-4305      TCGA-CG-4306      TCGA-CG-4436      TCGA-CG-4437 
"SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" 
     TCGA-CG-4438      TCGA-CG-4440      TCGA-CG-4441      TCGA-CG-4443 
"SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" 
     TCGA-CG-4444      TCGA-CG-4449      TCGA-CG-4455      TCGA-CG-4460 
"SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" 
     TCGA-CG-4462      TCGA-CG-4465      TCGA-CG-4466      TCGA-CG-4469 
"SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE"   "SMAD4 MUTATED" 
     TCGA-CG-4472      TCGA-CG-4474      TCGA-CG-4477      TCGA-CG-5716 
"SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" 
     TCGA-CG-5717      TCGA-CG-5718      TCGA-CG-5719      TCGA-CG-5720 
"SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE"   "SMAD4 MUTATED" "SMAD4 WILD-TYPE" 
     TCGA-CG-5721      TCGA-CG-5722      TCGA-CG-5723      TCGA-CG-5724 
"SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" 
     TCGA-CG-5725      TCGA-CG-5726      TCGA-CG-5727      TCGA-CG-5728 
"SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" 
     TCGA-CG-5730      TCGA-CG-5732      TCGA-CG-5733      TCGA-CG-5734 
"SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" 
     TCGA-D7-5577      TCGA-D7-5578      TCGA-D7-5579      TCGA-D7-6518 
"SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" 
     TCGA-D7-6519      TCGA-D7-6520      TCGA-D7-6521      TCGA-D7-6522 
"SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" 
     TCGA-D7-6524      TCGA-D7-6525      TCGA-D7-6526      TCGA-D7-6527 
"SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" 
     TCGA-D7-6528      TCGA-D7-6815      TCGA-D7-6817      TCGA-D7-6818 
"SMAD4 WILD-TYPE"   "SMAD4 MUTATED" "SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" 
     TCGA-D7-6820      TCGA-D7-6822      TCGA-EQ-5647      TCGA-F1-6177 
"SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" 
     TCGA-F1-6874 
"SMAD4 WILD-TYPE" 
[1] "hr=" "5"  
D25V2, continuous
D25V3, binary
[1] "tbl2"
                 cls
clus              [,1] [,2]
  SMAD4 MUTATED      2    5
  SMAD4 WILD-TYPE   44   65
        clus
vv       SMAD4 MUTATED SMAD4 WILD-TYPE
  FEMALE             2              44
  MALE               5              65
D25V4, multiclass
D25V5, multiclass
    clus
vv   SMAD4 MUTATED SMAD4 WILD-TYPE
  T1             0               4
  T2             4              42
  T3             2              39
  T4             1              14
D25V6, multiclass
    clus
vv   SMAD4 MUTATED SMAD4 WILD-TYPE
  N0             2              33
  N1             3              36
  N2             1              18
  N3             1              11
D25V7, multiclass
    clus
vv   SMAD4 MUTATED SMAD4 WILD-TYPE
  M0             5              94
  M1             1              12
  MX             1               3
D25V8, multiclass
     clus
vv    SMAD4 MUTATED SMAD4 WILD-TYPE
  I               1              17
  II              2              30
  III             2              27
  IV              2              19

Clustering(26) Variable = ASTN2 MUTATION ANALYSIS
D26V1, survival
                 sevent
clus2              0  1
  ASTN2 MUTATED    7  2
  ASTN2 WILD-TYPE 64 12
  ASTN2 MUTATED ASTN2 WILD-TYPE 
              9              76 
  ASTN2 MUTATED ASTN2 WILD-TYPE 
              2              12 
$`ASTN2 MUTATED`
TCGA-BR-6452 TCGA-BR-6852 TCGA-CD-5798 TCGA-CG-4469 TCGA-CG-4472 TCGA-CG-5721 
        0.95         0.26         0.82         7.07        12.00         5.98 
TCGA-CG-5728 TCGA-CG-5734 TCGA-D7-5579 
       65.10         7.99         4.54 

$`ASTN2 WILD-TYPE`
TCGA-B7-5816 TCGA-B7-5818 TCGA-BR-6455 TCGA-BR-6457 TCGA-BR-6458 TCGA-BR-6564 
        5.62         0.10         1.41         1.35         1.35         0.82 
TCGA-BR-6565 TCGA-BR-6566 TCGA-BR-6705 TCGA-BR-6706 TCGA-BR-6707 TCGA-BR-6709 
        0.62         0.62         1.71         2.17         0.99         1.22 
TCGA-BR-6710 TCGA-BR-6801 TCGA-BR-6802 TCGA-BR-6803 TCGA-CD-5799 TCGA-CD-5800 
        0.66         1.12         0.76         0.66         0.69         0.36 
TCGA-CD-5801 TCGA-CD-5802 TCGA-CD-5803 TCGA-CD-5813 TCGA-CG-4300 TCGA-CG-4301 
        0.49         0.30         0.07         0.39        20.02         3.02 
TCGA-CG-4304 TCGA-CG-4305 TCGA-CG-4306 TCGA-CG-4436 TCGA-CG-4437 TCGA-CG-4438 
       27.02        15.95         1.02        52.96         8.05        54.05 
TCGA-CG-4440 TCGA-CG-4441 TCGA-CG-4443 TCGA-CG-4444 TCGA-CG-4449 TCGA-CG-4455 
        4.01        14.01        29.98        47.05        19.07        12.03 
TCGA-CG-4460 TCGA-CG-4462 TCGA-CG-4465 TCGA-CG-4466 TCGA-CG-4474 TCGA-CG-4477 
       21.99         1.02         8.98        18.94         1.02         1.02 
TCGA-CG-5716 TCGA-CG-5717 TCGA-CG-5718 TCGA-CG-5719 TCGA-CG-5720 TCGA-CG-5722 
        1.02         6.94         1.02         1.02         0.99         0.95 
TCGA-CG-5723 TCGA-CG-5724 TCGA-CG-5725 TCGA-CG-5726 TCGA-CG-5727 TCGA-CG-5730 
       70.06        12.03        15.02        28.96        31.04         4.01 
TCGA-CG-5732 TCGA-CG-5733 TCGA-D7-5577 TCGA-D7-5578 TCGA-D7-6518 TCGA-D7-6519 
       55.04        21.07         8.65         3.58         9.80        15.65 
TCGA-D7-6520 TCGA-D7-6521 TCGA-D7-6522 TCGA-D7-6524 TCGA-D7-6525 TCGA-D7-6526 
        9.63         8.19         6.90         0.69         5.95         6.61 
TCGA-D7-6527 TCGA-D7-6528 TCGA-D7-6815 TCGA-D7-6817 TCGA-D7-6818 TCGA-D7-6820 
        4.14         1.68         3.65         4.70         4.04         2.93 
TCGA-D7-6822 TCGA-EQ-5647 TCGA-F1-6177 TCGA-F1-6874 
        4.27         0.62         6.54         2.01 

  ASTN2 MUTATED ASTN2 WILD-TYPE 
           0.26            0.07 
  ASTN2 MUTATED ASTN2 WILD-TYPE 
          65.10           70.06 
  ASTN2 MUTATED ASTN2 WILD-TYPE 
           5.98            3.83 
[1] "0.3 - 65.1 (6.0)" "0.1 - 70.1 (3.8)"
     TCGA-B7-5816      TCGA-B7-5818      TCGA-BR-6452      TCGA-BR-6455 
"ASTN2 WILD-TYPE" "ASTN2 WILD-TYPE"   "ASTN2 MUTATED" "ASTN2 WILD-TYPE" 
     TCGA-BR-6457      TCGA-BR-6458      TCGA-BR-6564      TCGA-BR-6565 
"ASTN2 WILD-TYPE" "ASTN2 WILD-TYPE" "ASTN2 WILD-TYPE" "ASTN2 WILD-TYPE" 
     TCGA-BR-6566      TCGA-BR-6705      TCGA-BR-6706      TCGA-BR-6707 
"ASTN2 WILD-TYPE" "ASTN2 WILD-TYPE" "ASTN2 WILD-TYPE" "ASTN2 WILD-TYPE" 
     TCGA-BR-6709      TCGA-BR-6710      TCGA-BR-6801      TCGA-BR-6802 
"ASTN2 WILD-TYPE" "ASTN2 WILD-TYPE" "ASTN2 WILD-TYPE" "ASTN2 WILD-TYPE" 
     TCGA-BR-6803      TCGA-BR-6852      TCGA-CD-5798      TCGA-CD-5799 
"ASTN2 WILD-TYPE"   "ASTN2 MUTATED"   "ASTN2 MUTATED" "ASTN2 WILD-TYPE" 
     TCGA-CD-5800      TCGA-CD-5801      TCGA-CD-5802      TCGA-CD-5803 
"ASTN2 WILD-TYPE" "ASTN2 WILD-TYPE" "ASTN2 WILD-TYPE" "ASTN2 WILD-TYPE" 
     TCGA-CD-5813      TCGA-CG-4300      TCGA-CG-4301      TCGA-CG-4304 
"ASTN2 WILD-TYPE" "ASTN2 WILD-TYPE" "ASTN2 WILD-TYPE" "ASTN2 WILD-TYPE" 
     TCGA-CG-4305      TCGA-CG-4306      TCGA-CG-4436      TCGA-CG-4437 
"ASTN2 WILD-TYPE" "ASTN2 WILD-TYPE" "ASTN2 WILD-TYPE" "ASTN2 WILD-TYPE" 
     TCGA-CG-4438      TCGA-CG-4440      TCGA-CG-4441      TCGA-CG-4443 
"ASTN2 WILD-TYPE" "ASTN2 WILD-TYPE" "ASTN2 WILD-TYPE" "ASTN2 WILD-TYPE" 
     TCGA-CG-4444      TCGA-CG-4449      TCGA-CG-4455      TCGA-CG-4460 
"ASTN2 WILD-TYPE" "ASTN2 WILD-TYPE" "ASTN2 WILD-TYPE" "ASTN2 WILD-TYPE" 
     TCGA-CG-4462      TCGA-CG-4465      TCGA-CG-4466      TCGA-CG-4469 
"ASTN2 WILD-TYPE" "ASTN2 WILD-TYPE" "ASTN2 WILD-TYPE"   "ASTN2 MUTATED" 
     TCGA-CG-4472      TCGA-CG-4474      TCGA-CG-4477      TCGA-CG-5716 
  "ASTN2 MUTATED" "ASTN2 WILD-TYPE" "ASTN2 WILD-TYPE" "ASTN2 WILD-TYPE" 
     TCGA-CG-5717      TCGA-CG-5718      TCGA-CG-5719      TCGA-CG-5720 
"ASTN2 WILD-TYPE" "ASTN2 WILD-TYPE" "ASTN2 WILD-TYPE" "ASTN2 WILD-TYPE" 
     TCGA-CG-5721      TCGA-CG-5722      TCGA-CG-5723      TCGA-CG-5724 
  "ASTN2 MUTATED" "ASTN2 WILD-TYPE" "ASTN2 WILD-TYPE" "ASTN2 WILD-TYPE" 
     TCGA-CG-5725      TCGA-CG-5726      TCGA-CG-5727      TCGA-CG-5728 
"ASTN2 WILD-TYPE" "ASTN2 WILD-TYPE" "ASTN2 WILD-TYPE"   "ASTN2 MUTATED" 
     TCGA-CG-5730      TCGA-CG-5732      TCGA-CG-5733      TCGA-CG-5734 
"ASTN2 WILD-TYPE" "ASTN2 WILD-TYPE" "ASTN2 WILD-TYPE"   "ASTN2 MUTATED" 
     TCGA-D7-5577      TCGA-D7-5578      TCGA-D7-5579      TCGA-D7-6518 
"ASTN2 WILD-TYPE" "ASTN2 WILD-TYPE"   "ASTN2 MUTATED" "ASTN2 WILD-TYPE" 
     TCGA-D7-6519      TCGA-D7-6520      TCGA-D7-6521      TCGA-D7-6522 
"ASTN2 WILD-TYPE" "ASTN2 WILD-TYPE" "ASTN2 WILD-TYPE" "ASTN2 WILD-TYPE" 
     TCGA-D7-6524      TCGA-D7-6525      TCGA-D7-6526      TCGA-D7-6527 
"ASTN2 WILD-TYPE" "ASTN2 WILD-TYPE" "ASTN2 WILD-TYPE" "ASTN2 WILD-TYPE" 
     TCGA-D7-6528      TCGA-D7-6815      TCGA-D7-6817      TCGA-D7-6818 
"ASTN2 WILD-TYPE" "ASTN2 WILD-TYPE" "ASTN2 WILD-TYPE" "ASTN2 WILD-TYPE" 
     TCGA-D7-6820      TCGA-D7-6822      TCGA-EQ-5647      TCGA-F1-6177 
"ASTN2 WILD-TYPE" "ASTN2 WILD-TYPE" "ASTN2 WILD-TYPE" "ASTN2 WILD-TYPE" 
     TCGA-F1-6874 
"ASTN2 WILD-TYPE" 
     TCGA-B7-5816      TCGA-B7-5818      TCGA-BR-6452      TCGA-BR-6455 
"ASTN2 WILD-TYPE" "ASTN2 WILD-TYPE"   "ASTN2 MUTATED" "ASTN2 WILD-TYPE" 
     TCGA-BR-6457      TCGA-BR-6458      TCGA-BR-6564      TCGA-BR-6565 
"ASTN2 WILD-TYPE" "ASTN2 WILD-TYPE" "ASTN2 WILD-TYPE" "ASTN2 WILD-TYPE" 
     TCGA-BR-6566      TCGA-BR-6705      TCGA-BR-6706      TCGA-BR-6707 
"ASTN2 WILD-TYPE" "ASTN2 WILD-TYPE" "ASTN2 WILD-TYPE" "ASTN2 WILD-TYPE" 
     TCGA-BR-6709      TCGA-BR-6710      TCGA-BR-6801      TCGA-BR-6802 
"ASTN2 WILD-TYPE" "ASTN2 WILD-TYPE" "ASTN2 WILD-TYPE" "ASTN2 WILD-TYPE" 
     TCGA-BR-6803      TCGA-BR-6852      TCGA-CD-5798      TCGA-CD-5799 
"ASTN2 WILD-TYPE"   "ASTN2 MUTATED"   "ASTN2 MUTATED" "ASTN2 WILD-TYPE" 
     TCGA-CD-5800      TCGA-CD-5801      TCGA-CD-5802      TCGA-CD-5803 
"ASTN2 WILD-TYPE" "ASTN2 WILD-TYPE" "ASTN2 WILD-TYPE" "ASTN2 WILD-TYPE" 
     TCGA-CD-5813      TCGA-CG-4300      TCGA-CG-4301      TCGA-CG-4304 
"ASTN2 WILD-TYPE" "ASTN2 WILD-TYPE" "ASTN2 WILD-TYPE" "ASTN2 WILD-TYPE" 
     TCGA-CG-4305      TCGA-CG-4306      TCGA-CG-4436      TCGA-CG-4437 
"ASTN2 WILD-TYPE" "ASTN2 WILD-TYPE" "ASTN2 WILD-TYPE" "ASTN2 WILD-TYPE" 
     TCGA-CG-4438      TCGA-CG-4440      TCGA-CG-4441      TCGA-CG-4443 
"ASTN2 WILD-TYPE" "ASTN2 WILD-TYPE" "ASTN2 WILD-TYPE" "ASTN2 WILD-TYPE" 
     TCGA-CG-4444      TCGA-CG-4449      TCGA-CG-4455      TCGA-CG-4460 
"ASTN2 WILD-TYPE" "ASTN2 WILD-TYPE" "ASTN2 WILD-TYPE" "ASTN2 WILD-TYPE" 
     TCGA-CG-4462      TCGA-CG-4465      TCGA-CG-4466      TCGA-CG-4469 
"ASTN2 WILD-TYPE" "ASTN2 WILD-TYPE" "ASTN2 WILD-TYPE"   "ASTN2 MUTATED" 
     TCGA-CG-4472      TCGA-CG-4474      TCGA-CG-4477      TCGA-CG-5716 
  "ASTN2 MUTATED" "ASTN2 WILD-TYPE" "ASTN2 WILD-TYPE" "ASTN2 WILD-TYPE" 
     TCGA-CG-5717      TCGA-CG-5718      TCGA-CG-5719      TCGA-CG-5720 
"ASTN2 WILD-TYPE" "ASTN2 WILD-TYPE" "ASTN2 WILD-TYPE" "ASTN2 WILD-TYPE" 
     TCGA-CG-5721      TCGA-CG-5722      TCGA-CG-5723      TCGA-CG-5724 
  "ASTN2 MUTATED" "ASTN2 WILD-TYPE" "ASTN2 WILD-TYPE" "ASTN2 WILD-TYPE" 
     TCGA-CG-5725      TCGA-CG-5726      TCGA-CG-5727      TCGA-CG-5728 
"ASTN2 WILD-TYPE" "ASTN2 WILD-TYPE" "ASTN2 WILD-TYPE"   "ASTN2 MUTATED" 
     TCGA-CG-5730      TCGA-CG-5732      TCGA-CG-5733      TCGA-CG-5734 
"ASTN2 WILD-TYPE" "ASTN2 WILD-TYPE" "ASTN2 WILD-TYPE"   "ASTN2 MUTATED" 
     TCGA-D7-5577      TCGA-D7-5578      TCGA-D7-5579      TCGA-D7-6518 
"ASTN2 WILD-TYPE" "ASTN2 WILD-TYPE"   "ASTN2 MUTATED" "ASTN2 WILD-TYPE" 
     TCGA-D7-6519      TCGA-D7-6520      TCGA-D7-6521      TCGA-D7-6522 
"ASTN2 WILD-TYPE" "ASTN2 WILD-TYPE" "ASTN2 WILD-TYPE" "ASTN2 WILD-TYPE" 
     TCGA-D7-6524      TCGA-D7-6525      TCGA-D7-6526      TCGA-D7-6527 
"ASTN2 WILD-TYPE" "ASTN2 WILD-TYPE" "ASTN2 WILD-TYPE" "ASTN2 WILD-TYPE" 
     TCGA-D7-6528      TCGA-D7-6815      TCGA-D7-6817      TCGA-D7-6818 
"ASTN2 WILD-TYPE" "ASTN2 WILD-TYPE" "ASTN2 WILD-TYPE" "ASTN2 WILD-TYPE" 
     TCGA-D7-6820      TCGA-D7-6822      TCGA-EQ-5647      TCGA-F1-6177 
"ASTN2 WILD-TYPE" "ASTN2 WILD-TYPE" "ASTN2 WILD-TYPE" "ASTN2 WILD-TYPE" 
     TCGA-F1-6874 
"ASTN2 WILD-TYPE" 
     TCGA-B7-5816      TCGA-B7-5818      TCGA-BR-6452      TCGA-BR-6455 
"ASTN2 WILD-TYPE" "ASTN2 WILD-TYPE"   "ASTN2 MUTATED" "ASTN2 WILD-TYPE" 
     TCGA-BR-6457      TCGA-BR-6458      TCGA-BR-6564      TCGA-BR-6565 
"ASTN2 WILD-TYPE" "ASTN2 WILD-TYPE" "ASTN2 WILD-TYPE" "ASTN2 WILD-TYPE" 
     TCGA-BR-6566      TCGA-BR-6705      TCGA-BR-6706      TCGA-BR-6707 
"ASTN2 WILD-TYPE" "ASTN2 WILD-TYPE" "ASTN2 WILD-TYPE" "ASTN2 WILD-TYPE" 
     TCGA-BR-6709      TCGA-BR-6710      TCGA-BR-6801      TCGA-BR-6802 
"ASTN2 WILD-TYPE" "ASTN2 WILD-TYPE" "ASTN2 WILD-TYPE" "ASTN2 WILD-TYPE" 
     TCGA-BR-6803      TCGA-BR-6852      TCGA-CD-5798      TCGA-CD-5799 
"ASTN2 WILD-TYPE"   "ASTN2 MUTATED"   "ASTN2 MUTATED" "ASTN2 WILD-TYPE" 
     TCGA-CD-5800      TCGA-CD-5801      TCGA-CD-5802      TCGA-CD-5803 
"ASTN2 WILD-TYPE" "ASTN2 WILD-TYPE" "ASTN2 WILD-TYPE" "ASTN2 WILD-TYPE" 
     TCGA-CD-5813      TCGA-CG-4300      TCGA-CG-4301      TCGA-CG-4304 
"ASTN2 WILD-TYPE" "ASTN2 WILD-TYPE" "ASTN2 WILD-TYPE" "ASTN2 WILD-TYPE" 
     TCGA-CG-4305      TCGA-CG-4306      TCGA-CG-4436      TCGA-CG-4437 
"ASTN2 WILD-TYPE" "ASTN2 WILD-TYPE" "ASTN2 WILD-TYPE" "ASTN2 WILD-TYPE" 
     TCGA-CG-4438      TCGA-CG-4440      TCGA-CG-4441      TCGA-CG-4443 
"ASTN2 WILD-TYPE" "ASTN2 WILD-TYPE" "ASTN2 WILD-TYPE" "ASTN2 WILD-TYPE" 
     TCGA-CG-4444      TCGA-CG-4449      TCGA-CG-4455      TCGA-CG-4460 
"ASTN2 WILD-TYPE" "ASTN2 WILD-TYPE" "ASTN2 WILD-TYPE" "ASTN2 WILD-TYPE" 
     TCGA-CG-4462      TCGA-CG-4465      TCGA-CG-4466      TCGA-CG-4469 
"ASTN2 WILD-TYPE" "ASTN2 WILD-TYPE" "ASTN2 WILD-TYPE"   "ASTN2 MUTATED" 
     TCGA-CG-4472      TCGA-CG-4474      TCGA-CG-4477      TCGA-CG-5716 
  "ASTN2 MUTATED" "ASTN2 WILD-TYPE" "ASTN2 WILD-TYPE" "ASTN2 WILD-TYPE" 
     TCGA-CG-5717      TCGA-CG-5718      TCGA-CG-5719      TCGA-CG-5720 
"ASTN2 WILD-TYPE" "ASTN2 WILD-TYPE" "ASTN2 WILD-TYPE" "ASTN2 WILD-TYPE" 
     TCGA-CG-5721      TCGA-CG-5722      TCGA-CG-5723      TCGA-CG-5724 
  "ASTN2 MUTATED" "ASTN2 WILD-TYPE" "ASTN2 WILD-TYPE" "ASTN2 WILD-TYPE" 
     TCGA-CG-5725      TCGA-CG-5726      TCGA-CG-5727      TCGA-CG-5728 
"ASTN2 WILD-TYPE" "ASTN2 WILD-TYPE" "ASTN2 WILD-TYPE"   "ASTN2 MUTATED" 
     TCGA-CG-5730      TCGA-CG-5732      TCGA-CG-5733      TCGA-CG-5734 
"ASTN2 WILD-TYPE" "ASTN2 WILD-TYPE" "ASTN2 WILD-TYPE"   "ASTN2 MUTATED" 
     TCGA-D7-5577      TCGA-D7-5578      TCGA-D7-5579      TCGA-D7-6518 
"ASTN2 WILD-TYPE" "ASTN2 WILD-TYPE"   "ASTN2 MUTATED" "ASTN2 WILD-TYPE" 
     TCGA-D7-6519      TCGA-D7-6520      TCGA-D7-6521      TCGA-D7-6522 
"ASTN2 WILD-TYPE" "ASTN2 WILD-TYPE" "ASTN2 WILD-TYPE" "ASTN2 WILD-TYPE" 
     TCGA-D7-6524      TCGA-D7-6525      TCGA-D7-6526      TCGA-D7-6527 
"ASTN2 WILD-TYPE" "ASTN2 WILD-TYPE" "ASTN2 WILD-TYPE" "ASTN2 WILD-TYPE" 
     TCGA-D7-6528      TCGA-D7-6815      TCGA-D7-6817      TCGA-D7-6818 
"ASTN2 WILD-TYPE" "ASTN2 WILD-TYPE" "ASTN2 WILD-TYPE" "ASTN2 WILD-TYPE" 
     TCGA-D7-6820      TCGA-D7-6822      TCGA-EQ-5647      TCGA-F1-6177 
"ASTN2 WILD-TYPE" "ASTN2 WILD-TYPE" "ASTN2 WILD-TYPE" "ASTN2 WILD-TYPE" 
     TCGA-F1-6874 
"ASTN2 WILD-TYPE" 
[1] "hr=" "1.6"
D26V2, continuous
D26V3, binary
[1] "tbl2"
                 cls
clus              [,1] [,2]
  ASTN2 MUTATED      7    7
  ASTN2 WILD-TYPE   39   63
        clus
vv       ASTN2 MUTATED ASTN2 WILD-TYPE
  FEMALE             7              39
  MALE               7              63
D26V4, multiclass
D26V5, multiclass
    clus
vv   ASTN2 MUTATED ASTN2 WILD-TYPE
  T1             1               3
  T2             2              44
  T3             7              34
  T4             2              13
D26V6, multiclass
    clus
vv   ASTN2 MUTATED ASTN2 WILD-TYPE
  N0             4              31
  N1             5              34
  N2             1              18
  N3             1              11
D26V7, multiclass
    clus
vv   ASTN2 MUTATED ASTN2 WILD-TYPE
  M0            13              86
  M1             0              13
  MX             1               3
D26V8, multiclass
     clus
vv    ASTN2 MUTATED ASTN2 WILD-TYPE
  I               1              17
  II              4              28
  III             2              27
  IV              3              18

Clustering(27) Variable = OR4Q3 MUTATION ANALYSIS
D27V1, survival
                 sevent
clus2              0  1
  OR4Q3 MUTATED    2  2
  OR4Q3 WILD-TYPE 69 12
  OR4Q3 MUTATED OR4Q3 WILD-TYPE 
              4              81 
  OR4Q3 MUTATED OR4Q3 WILD-TYPE 
              2              12 
$`OR4Q3 MUTATED`
TCGA-CG-4306 TCGA-CG-4441 TCGA-CG-4444 TCGA-F1-6177 
        1.02        14.01        47.05         6.54 

$`OR4Q3 WILD-TYPE`
TCGA-B7-5816 TCGA-B7-5818 TCGA-BR-6452 TCGA-BR-6455 TCGA-BR-6457 TCGA-BR-6458 
        5.62         0.10         0.95         1.41         1.35         1.35 
TCGA-BR-6564 TCGA-BR-6565 TCGA-BR-6566 TCGA-BR-6705 TCGA-BR-6706 TCGA-BR-6707 
        0.82         0.62         0.62         1.71         2.17         0.99 
TCGA-BR-6709 TCGA-BR-6710 TCGA-BR-6801 TCGA-BR-6802 TCGA-BR-6803 TCGA-BR-6852 
        1.22         0.66         1.12         0.76         0.66         0.26 
TCGA-CD-5798 TCGA-CD-5799 TCGA-CD-5800 TCGA-CD-5801 TCGA-CD-5802 TCGA-CD-5803 
        0.82         0.69         0.36         0.49         0.30         0.07 
TCGA-CD-5813 TCGA-CG-4300 TCGA-CG-4301 TCGA-CG-4304 TCGA-CG-4305 TCGA-CG-4436 
        0.39        20.02         3.02        27.02        15.95        52.96 
TCGA-CG-4437 TCGA-CG-4438 TCGA-CG-4440 TCGA-CG-4443 TCGA-CG-4449 TCGA-CG-4455 
        8.05        54.05         4.01        29.98        19.07        12.03 
TCGA-CG-4460 TCGA-CG-4462 TCGA-CG-4465 TCGA-CG-4466 TCGA-CG-4469 TCGA-CG-4472 
       21.99         1.02         8.98        18.94         7.07        12.00 
TCGA-CG-4474 TCGA-CG-4477 TCGA-CG-5716 TCGA-CG-5717 TCGA-CG-5718 TCGA-CG-5719 
        1.02         1.02         1.02         6.94         1.02         1.02 
TCGA-CG-5720 TCGA-CG-5721 TCGA-CG-5722 TCGA-CG-5723 TCGA-CG-5724 TCGA-CG-5725 
        0.99         5.98         0.95        70.06        12.03        15.02 
TCGA-CG-5726 TCGA-CG-5727 TCGA-CG-5728 TCGA-CG-5730 TCGA-CG-5732 TCGA-CG-5733 
       28.96        31.04        65.10         4.01        55.04        21.07 
TCGA-CG-5734 TCGA-D7-5577 TCGA-D7-5578 TCGA-D7-5579 TCGA-D7-6518 TCGA-D7-6519 
        7.99         8.65         3.58         4.54         9.80        15.65 
TCGA-D7-6520 TCGA-D7-6521 TCGA-D7-6522 TCGA-D7-6524 TCGA-D7-6525 TCGA-D7-6526 
        9.63         8.19         6.90         0.69         5.95         6.61 
TCGA-D7-6527 TCGA-D7-6528 TCGA-D7-6815 TCGA-D7-6817 TCGA-D7-6818 TCGA-D7-6820 
        4.14         1.68         3.65         4.70         4.04         2.93 
TCGA-D7-6822 TCGA-EQ-5647 TCGA-F1-6874 
        4.27         0.62         2.01 

  OR4Q3 MUTATED OR4Q3 WILD-TYPE 
           1.02            0.07 
  OR4Q3 MUTATED OR4Q3 WILD-TYPE 
          47.05           70.06 
  OR4Q3 MUTATED OR4Q3 WILD-TYPE 
         10.275           4.010 
[1] "1.0 - 47.0 (10.3)" "0.1 - 70.1 (4.0)" 
     TCGA-B7-5816      TCGA-B7-5818      TCGA-BR-6452      TCGA-BR-6455 
"OR4Q3 WILD-TYPE" "OR4Q3 WILD-TYPE" "OR4Q3 WILD-TYPE" "OR4Q3 WILD-TYPE" 
     TCGA-BR-6457      TCGA-BR-6458      TCGA-BR-6564      TCGA-BR-6565 
"OR4Q3 WILD-TYPE" "OR4Q3 WILD-TYPE" "OR4Q3 WILD-TYPE" "OR4Q3 WILD-TYPE" 
     TCGA-BR-6566      TCGA-BR-6705      TCGA-BR-6706      TCGA-BR-6707 
"OR4Q3 WILD-TYPE" "OR4Q3 WILD-TYPE" "OR4Q3 WILD-TYPE" "OR4Q3 WILD-TYPE" 
     TCGA-BR-6709      TCGA-BR-6710      TCGA-BR-6801      TCGA-BR-6802 
"OR4Q3 WILD-TYPE" "OR4Q3 WILD-TYPE" "OR4Q3 WILD-TYPE" "OR4Q3 WILD-TYPE" 
     TCGA-BR-6803      TCGA-BR-6852      TCGA-CD-5798      TCGA-CD-5799 
"OR4Q3 WILD-TYPE" "OR4Q3 WILD-TYPE" "OR4Q3 WILD-TYPE" "OR4Q3 WILD-TYPE" 
     TCGA-CD-5800      TCGA-CD-5801      TCGA-CD-5802      TCGA-CD-5803 
"OR4Q3 WILD-TYPE" "OR4Q3 WILD-TYPE" "OR4Q3 WILD-TYPE" "OR4Q3 WILD-TYPE" 
     TCGA-CD-5813      TCGA-CG-4300      TCGA-CG-4301      TCGA-CG-4304 
"OR4Q3 WILD-TYPE" "OR4Q3 WILD-TYPE" "OR4Q3 WILD-TYPE" "OR4Q3 WILD-TYPE" 
     TCGA-CG-4305      TCGA-CG-4306      TCGA-CG-4436      TCGA-CG-4437 
"OR4Q3 WILD-TYPE"   "OR4Q3 MUTATED" "OR4Q3 WILD-TYPE" "OR4Q3 WILD-TYPE" 
     TCGA-CG-4438      TCGA-CG-4440      TCGA-CG-4441      TCGA-CG-4443 
"OR4Q3 WILD-TYPE" "OR4Q3 WILD-TYPE"   "OR4Q3 MUTATED" "OR4Q3 WILD-TYPE" 
     TCGA-CG-4444      TCGA-CG-4449      TCGA-CG-4455      TCGA-CG-4460 
  "OR4Q3 MUTATED" "OR4Q3 WILD-TYPE" "OR4Q3 WILD-TYPE" "OR4Q3 WILD-TYPE" 
     TCGA-CG-4462      TCGA-CG-4465      TCGA-CG-4466      TCGA-CG-4469 
"OR4Q3 WILD-TYPE" "OR4Q3 WILD-TYPE" "OR4Q3 WILD-TYPE" "OR4Q3 WILD-TYPE" 
     TCGA-CG-4472      TCGA-CG-4474      TCGA-CG-4477      TCGA-CG-5716 
"OR4Q3 WILD-TYPE" "OR4Q3 WILD-TYPE" "OR4Q3 WILD-TYPE" "OR4Q3 WILD-TYPE" 
     TCGA-CG-5717      TCGA-CG-5718      TCGA-CG-5719      TCGA-CG-5720 
"OR4Q3 WILD-TYPE" "OR4Q3 WILD-TYPE" "OR4Q3 WILD-TYPE" "OR4Q3 WILD-TYPE" 
     TCGA-CG-5721      TCGA-CG-5722      TCGA-CG-5723      TCGA-CG-5724 
"OR4Q3 WILD-TYPE" "OR4Q3 WILD-TYPE" "OR4Q3 WILD-TYPE" "OR4Q3 WILD-TYPE" 
     TCGA-CG-5725      TCGA-CG-5726      TCGA-CG-5727      TCGA-CG-5728 
"OR4Q3 WILD-TYPE" "OR4Q3 WILD-TYPE" "OR4Q3 WILD-TYPE" "OR4Q3 WILD-TYPE" 
     TCGA-CG-5730      TCGA-CG-5732      TCGA-CG-5733      TCGA-CG-5734 
"OR4Q3 WILD-TYPE" "OR4Q3 WILD-TYPE" "OR4Q3 WILD-TYPE" "OR4Q3 WILD-TYPE" 
     TCGA-D7-5577      TCGA-D7-5578      TCGA-D7-5579      TCGA-D7-6518 
"OR4Q3 WILD-TYPE" "OR4Q3 WILD-TYPE" "OR4Q3 WILD-TYPE" "OR4Q3 WILD-TYPE" 
     TCGA-D7-6519      TCGA-D7-6520      TCGA-D7-6521      TCGA-D7-6522 
"OR4Q3 WILD-TYPE" "OR4Q3 WILD-TYPE" "OR4Q3 WILD-TYPE" "OR4Q3 WILD-TYPE" 
     TCGA-D7-6524      TCGA-D7-6525      TCGA-D7-6526      TCGA-D7-6527 
"OR4Q3 WILD-TYPE" "OR4Q3 WILD-TYPE" "OR4Q3 WILD-TYPE" "OR4Q3 WILD-TYPE" 
     TCGA-D7-6528      TCGA-D7-6815      TCGA-D7-6817      TCGA-D7-6818 
"OR4Q3 WILD-TYPE" "OR4Q3 WILD-TYPE" "OR4Q3 WILD-TYPE" "OR4Q3 WILD-TYPE" 
     TCGA-D7-6820      TCGA-D7-6822      TCGA-EQ-5647      TCGA-F1-6177 
"OR4Q3 WILD-TYPE" "OR4Q3 WILD-TYPE" "OR4Q3 WILD-TYPE"   "OR4Q3 MUTATED" 
     TCGA-F1-6874 
"OR4Q3 WILD-TYPE" 
     TCGA-B7-5816      TCGA-B7-5818      TCGA-BR-6452      TCGA-BR-6455 
"OR4Q3 WILD-TYPE" "OR4Q3 WILD-TYPE" "OR4Q3 WILD-TYPE" "OR4Q3 WILD-TYPE" 
     TCGA-BR-6457      TCGA-BR-6458      TCGA-BR-6564      TCGA-BR-6565 
"OR4Q3 WILD-TYPE" "OR4Q3 WILD-TYPE" "OR4Q3 WILD-TYPE" "OR4Q3 WILD-TYPE" 
     TCGA-BR-6566      TCGA-BR-6705      TCGA-BR-6706      TCGA-BR-6707 
"OR4Q3 WILD-TYPE" "OR4Q3 WILD-TYPE" "OR4Q3 WILD-TYPE" "OR4Q3 WILD-TYPE" 
     TCGA-BR-6709      TCGA-BR-6710      TCGA-BR-6801      TCGA-BR-6802 
"OR4Q3 WILD-TYPE" "OR4Q3 WILD-TYPE" "OR4Q3 WILD-TYPE" "OR4Q3 WILD-TYPE" 
     TCGA-BR-6803      TCGA-BR-6852      TCGA-CD-5798      TCGA-CD-5799 
"OR4Q3 WILD-TYPE" "OR4Q3 WILD-TYPE" "OR4Q3 WILD-TYPE" "OR4Q3 WILD-TYPE" 
     TCGA-CD-5800      TCGA-CD-5801      TCGA-CD-5802      TCGA-CD-5803 
"OR4Q3 WILD-TYPE" "OR4Q3 WILD-TYPE" "OR4Q3 WILD-TYPE" "OR4Q3 WILD-TYPE" 
     TCGA-CD-5813      TCGA-CG-4300      TCGA-CG-4301      TCGA-CG-4304 
"OR4Q3 WILD-TYPE" "OR4Q3 WILD-TYPE" "OR4Q3 WILD-TYPE" "OR4Q3 WILD-TYPE" 
     TCGA-CG-4305      TCGA-CG-4306      TCGA-CG-4436      TCGA-CG-4437 
"OR4Q3 WILD-TYPE"   "OR4Q3 MUTATED" "OR4Q3 WILD-TYPE" "OR4Q3 WILD-TYPE" 
     TCGA-CG-4438      TCGA-CG-4440      TCGA-CG-4441      TCGA-CG-4443 
"OR4Q3 WILD-TYPE" "OR4Q3 WILD-TYPE"   "OR4Q3 MUTATED" "OR4Q3 WILD-TYPE" 
     TCGA-CG-4444      TCGA-CG-4449      TCGA-CG-4455      TCGA-CG-4460 
  "OR4Q3 MUTATED" "OR4Q3 WILD-TYPE" "OR4Q3 WILD-TYPE" "OR4Q3 WILD-TYPE" 
     TCGA-CG-4462      TCGA-CG-4465      TCGA-CG-4466      TCGA-CG-4469 
"OR4Q3 WILD-TYPE" "OR4Q3 WILD-TYPE" "OR4Q3 WILD-TYPE" "OR4Q3 WILD-TYPE" 
     TCGA-CG-4472      TCGA-CG-4474      TCGA-CG-4477      TCGA-CG-5716 
"OR4Q3 WILD-TYPE" "OR4Q3 WILD-TYPE" "OR4Q3 WILD-TYPE" "OR4Q3 WILD-TYPE" 
     TCGA-CG-5717      TCGA-CG-5718      TCGA-CG-5719      TCGA-CG-5720 
"OR4Q3 WILD-TYPE" "OR4Q3 WILD-TYPE" "OR4Q3 WILD-TYPE" "OR4Q3 WILD-TYPE" 
     TCGA-CG-5721      TCGA-CG-5722      TCGA-CG-5723      TCGA-CG-5724 
"OR4Q3 WILD-TYPE" "OR4Q3 WILD-TYPE" "OR4Q3 WILD-TYPE" "OR4Q3 WILD-TYPE" 
     TCGA-CG-5725      TCGA-CG-5726      TCGA-CG-5727      TCGA-CG-5728 
"OR4Q3 WILD-TYPE" "OR4Q3 WILD-TYPE" "OR4Q3 WILD-TYPE" "OR4Q3 WILD-TYPE" 
     TCGA-CG-5730      TCGA-CG-5732      TCGA-CG-5733      TCGA-CG-5734 
"OR4Q3 WILD-TYPE" "OR4Q3 WILD-TYPE" "OR4Q3 WILD-TYPE" "OR4Q3 WILD-TYPE" 
     TCGA-D7-5577      TCGA-D7-5578      TCGA-D7-5579      TCGA-D7-6518 
"OR4Q3 WILD-TYPE" "OR4Q3 WILD-TYPE" "OR4Q3 WILD-TYPE" "OR4Q3 WILD-TYPE" 
     TCGA-D7-6519      TCGA-D7-6520      TCGA-D7-6521      TCGA-D7-6522 
"OR4Q3 WILD-TYPE" "OR4Q3 WILD-TYPE" "OR4Q3 WILD-TYPE" "OR4Q3 WILD-TYPE" 
     TCGA-D7-6524      TCGA-D7-6525      TCGA-D7-6526      TCGA-D7-6527 
"OR4Q3 WILD-TYPE" "OR4Q3 WILD-TYPE" "OR4Q3 WILD-TYPE" "OR4Q3 WILD-TYPE" 
     TCGA-D7-6528      TCGA-D7-6815      TCGA-D7-6817      TCGA-D7-6818 
"OR4Q3 WILD-TYPE" "OR4Q3 WILD-TYPE" "OR4Q3 WILD-TYPE" "OR4Q3 WILD-TYPE" 
     TCGA-D7-6820      TCGA-D7-6822      TCGA-EQ-5647      TCGA-F1-6177 
"OR4Q3 WILD-TYPE" "OR4Q3 WILD-TYPE" "OR4Q3 WILD-TYPE"   "OR4Q3 MUTATED" 
     TCGA-F1-6874 
"OR4Q3 WILD-TYPE" 
     TCGA-B7-5816      TCGA-B7-5818      TCGA-BR-6452      TCGA-BR-6455 
"OR4Q3 WILD-TYPE" "OR4Q3 WILD-TYPE" "OR4Q3 WILD-TYPE" "OR4Q3 WILD-TYPE" 
     TCGA-BR-6457      TCGA-BR-6458      TCGA-BR-6564      TCGA-BR-6565 
"OR4Q3 WILD-TYPE" "OR4Q3 WILD-TYPE" "OR4Q3 WILD-TYPE" "OR4Q3 WILD-TYPE" 
     TCGA-BR-6566      TCGA-BR-6705      TCGA-BR-6706      TCGA-BR-6707 
"OR4Q3 WILD-TYPE" "OR4Q3 WILD-TYPE" "OR4Q3 WILD-TYPE" "OR4Q3 WILD-TYPE" 
     TCGA-BR-6709      TCGA-BR-6710      TCGA-BR-6801      TCGA-BR-6802 
"OR4Q3 WILD-TYPE" "OR4Q3 WILD-TYPE" "OR4Q3 WILD-TYPE" "OR4Q3 WILD-TYPE" 
     TCGA-BR-6803      TCGA-BR-6852      TCGA-CD-5798      TCGA-CD-5799 
"OR4Q3 WILD-TYPE" "OR4Q3 WILD-TYPE" "OR4Q3 WILD-TYPE" "OR4Q3 WILD-TYPE" 
     TCGA-CD-5800      TCGA-CD-5801      TCGA-CD-5802      TCGA-CD-5803 
"OR4Q3 WILD-TYPE" "OR4Q3 WILD-TYPE" "OR4Q3 WILD-TYPE" "OR4Q3 WILD-TYPE" 
     TCGA-CD-5813      TCGA-CG-4300      TCGA-CG-4301      TCGA-CG-4304 
"OR4Q3 WILD-TYPE" "OR4Q3 WILD-TYPE" "OR4Q3 WILD-TYPE" "OR4Q3 WILD-TYPE" 
     TCGA-CG-4305      TCGA-CG-4306      TCGA-CG-4436      TCGA-CG-4437 
"OR4Q3 WILD-TYPE"   "OR4Q3 MUTATED" "OR4Q3 WILD-TYPE" "OR4Q3 WILD-TYPE" 
     TCGA-CG-4438      TCGA-CG-4440      TCGA-CG-4441      TCGA-CG-4443 
"OR4Q3 WILD-TYPE" "OR4Q3 WILD-TYPE"   "OR4Q3 MUTATED" "OR4Q3 WILD-TYPE" 
     TCGA-CG-4444      TCGA-CG-4449      TCGA-CG-4455      TCGA-CG-4460 
  "OR4Q3 MUTATED" "OR4Q3 WILD-TYPE" "OR4Q3 WILD-TYPE" "OR4Q3 WILD-TYPE" 
     TCGA-CG-4462      TCGA-CG-4465      TCGA-CG-4466      TCGA-CG-4469 
"OR4Q3 WILD-TYPE" "OR4Q3 WILD-TYPE" "OR4Q3 WILD-TYPE" "OR4Q3 WILD-TYPE" 
     TCGA-CG-4472      TCGA-CG-4474      TCGA-CG-4477      TCGA-CG-5716 
"OR4Q3 WILD-TYPE" "OR4Q3 WILD-TYPE" "OR4Q3 WILD-TYPE" "OR4Q3 WILD-TYPE" 
     TCGA-CG-5717      TCGA-CG-5718      TCGA-CG-5719      TCGA-CG-5720 
"OR4Q3 WILD-TYPE" "OR4Q3 WILD-TYPE" "OR4Q3 WILD-TYPE" "OR4Q3 WILD-TYPE" 
     TCGA-CG-5721      TCGA-CG-5722      TCGA-CG-5723      TCGA-CG-5724 
"OR4Q3 WILD-TYPE" "OR4Q3 WILD-TYPE" "OR4Q3 WILD-TYPE" "OR4Q3 WILD-TYPE" 
     TCGA-CG-5725      TCGA-CG-5726      TCGA-CG-5727      TCGA-CG-5728 
"OR4Q3 WILD-TYPE" "OR4Q3 WILD-TYPE" "OR4Q3 WILD-TYPE" "OR4Q3 WILD-TYPE" 
     TCGA-CG-5730      TCGA-CG-5732      TCGA-CG-5733      TCGA-CG-5734 
"OR4Q3 WILD-TYPE" "OR4Q3 WILD-TYPE" "OR4Q3 WILD-TYPE" "OR4Q3 WILD-TYPE" 
     TCGA-D7-5577      TCGA-D7-5578      TCGA-D7-5579      TCGA-D7-6518 
"OR4Q3 WILD-TYPE" "OR4Q3 WILD-TYPE" "OR4Q3 WILD-TYPE" "OR4Q3 WILD-TYPE" 
     TCGA-D7-6519      TCGA-D7-6520      TCGA-D7-6521      TCGA-D7-6522 
"OR4Q3 WILD-TYPE" "OR4Q3 WILD-TYPE" "OR4Q3 WILD-TYPE" "OR4Q3 WILD-TYPE" 
     TCGA-D7-6524      TCGA-D7-6525      TCGA-D7-6526      TCGA-D7-6527 
"OR4Q3 WILD-TYPE" "OR4Q3 WILD-TYPE" "OR4Q3 WILD-TYPE" "OR4Q3 WILD-TYPE" 
     TCGA-D7-6528      TCGA-D7-6815      TCGA-D7-6817      TCGA-D7-6818 
"OR4Q3 WILD-TYPE" "OR4Q3 WILD-TYPE" "OR4Q3 WILD-TYPE" "OR4Q3 WILD-TYPE" 
     TCGA-D7-6820      TCGA-D7-6822      TCGA-EQ-5647      TCGA-F1-6177 
"OR4Q3 WILD-TYPE" "OR4Q3 WILD-TYPE" "OR4Q3 WILD-TYPE"   "OR4Q3 MUTATED" 
     TCGA-F1-6874 
"OR4Q3 WILD-TYPE" 
[1] "hr=" "2"  
D27V2, continuous
D27V3, binary
[1] "tbl2"
                 cls
clus              [,1] [,2]
  OR4Q3 MUTATED      1    5
  OR4Q3 WILD-TYPE   45   65
        clus
vv       OR4Q3 MUTATED OR4Q3 WILD-TYPE
  FEMALE             1              45
  MALE               5              65
D27V4, multiclass
D27V5, multiclass
    clus
vv   OR4Q3 MUTATED OR4Q3 WILD-TYPE
  T1             1               3
  T2             3              43
  T3             1              40
  T4             0              15
D27V6, multiclass
    clus
vv   OR4Q3 MUTATED OR4Q3 WILD-TYPE
  N0             0              35
  N1             3              36
  N2             3              16
  N3             0              12
D27V7, multiclass
    clus
vv   OR4Q3 MUTATED OR4Q3 WILD-TYPE
  M0             4              95
  M1             1              12
  MX             1               3
D27V8, multiclass
     clus
vv    OR4Q3 MUTATED OR4Q3 WILD-TYPE
  I               1              17
  II              0              32
  III             3              26
  IV              1              20

Clustering(28) Variable = IAPP MUTATION ANALYSIS
D28V1, survival
                sevent
clus2             0  1
  IAPP MUTATED    2  0
  IAPP WILD-TYPE 69 14
  IAPP MUTATED IAPP WILD-TYPE 
             2             83 
  IAPP MUTATED IAPP WILD-TYPE 
             0             14 
$`IAPP MUTATED`
TCGA-CG-4466 TCGA-D7-6522 
       18.94         6.90 

$`IAPP WILD-TYPE`
TCGA-B7-5816 TCGA-B7-5818 TCGA-BR-6452 TCGA-BR-6455 TCGA-BR-6457 TCGA-BR-6458 
        5.62         0.10         0.95         1.41         1.35         1.35 
TCGA-BR-6564 TCGA-BR-6565 TCGA-BR-6566 TCGA-BR-6705 TCGA-BR-6706 TCGA-BR-6707 
        0.82         0.62         0.62         1.71         2.17         0.99 
TCGA-BR-6709 TCGA-BR-6710 TCGA-BR-6801 TCGA-BR-6802 TCGA-BR-6803 TCGA-BR-6852 
        1.22         0.66         1.12         0.76         0.66         0.26 
TCGA-CD-5798 TCGA-CD-5799 TCGA-CD-5800 TCGA-CD-5801 TCGA-CD-5802 TCGA-CD-5803 
        0.82         0.69         0.36         0.49         0.30         0.07 
TCGA-CD-5813 TCGA-CG-4300 TCGA-CG-4301 TCGA-CG-4304 TCGA-CG-4305 TCGA-CG-4306 
        0.39        20.02         3.02        27.02        15.95         1.02 
TCGA-CG-4436 TCGA-CG-4437 TCGA-CG-4438 TCGA-CG-4440 TCGA-CG-4441 TCGA-CG-4443 
       52.96         8.05        54.05         4.01        14.01        29.98 
TCGA-CG-4444 TCGA-CG-4449 TCGA-CG-4455 TCGA-CG-4460 TCGA-CG-4462 TCGA-CG-4465 
       47.05        19.07        12.03        21.99         1.02         8.98 
TCGA-CG-4469 TCGA-CG-4472 TCGA-CG-4474 TCGA-CG-4477 TCGA-CG-5716 TCGA-CG-5717 
        7.07        12.00         1.02         1.02         1.02         6.94 
TCGA-CG-5718 TCGA-CG-5719 TCGA-CG-5720 TCGA-CG-5721 TCGA-CG-5722 TCGA-CG-5723 
        1.02         1.02         0.99         5.98         0.95        70.06 
TCGA-CG-5724 TCGA-CG-5725 TCGA-CG-5726 TCGA-CG-5727 TCGA-CG-5728 TCGA-CG-5730 
       12.03        15.02        28.96        31.04        65.10         4.01 
TCGA-CG-5732 TCGA-CG-5733 TCGA-CG-5734 TCGA-D7-5577 TCGA-D7-5578 TCGA-D7-5579 
       55.04        21.07         7.99         8.65         3.58         4.54 
TCGA-D7-6518 TCGA-D7-6519 TCGA-D7-6520 TCGA-D7-6521 TCGA-D7-6524 TCGA-D7-6525 
        9.80        15.65         9.63         8.19         0.69         5.95 
TCGA-D7-6526 TCGA-D7-6527 TCGA-D7-6528 TCGA-D7-6815 TCGA-D7-6817 TCGA-D7-6818 
        6.61         4.14         1.68         3.65         4.70         4.04 
TCGA-D7-6820 TCGA-D7-6822 TCGA-EQ-5647 TCGA-F1-6177 TCGA-F1-6874 
        2.93         4.27         0.62         6.54         2.01 

  IAPP MUTATED IAPP WILD-TYPE 
          6.90           0.07 
  IAPP MUTATED IAPP WILD-TYPE 
         18.94          70.06 
  IAPP MUTATED IAPP WILD-TYPE 
         12.92           4.01 
[1] "6.9 - 18.9 (12.9)" "0.1 - 70.1 (4.0)" 
    TCGA-B7-5816     TCGA-B7-5818     TCGA-BR-6452     TCGA-BR-6455 
"IAPP WILD-TYPE" "IAPP WILD-TYPE" "IAPP WILD-TYPE" "IAPP WILD-TYPE" 
    TCGA-BR-6457     TCGA-BR-6458     TCGA-BR-6564     TCGA-BR-6565 
"IAPP WILD-TYPE" "IAPP WILD-TYPE" "IAPP WILD-TYPE" "IAPP WILD-TYPE" 
    TCGA-BR-6566     TCGA-BR-6705     TCGA-BR-6706     TCGA-BR-6707 
"IAPP WILD-TYPE" "IAPP WILD-TYPE" "IAPP WILD-TYPE" "IAPP WILD-TYPE" 
    TCGA-BR-6709     TCGA-BR-6710     TCGA-BR-6801     TCGA-BR-6802 
"IAPP WILD-TYPE" "IAPP WILD-TYPE" "IAPP WILD-TYPE" "IAPP WILD-TYPE" 
    TCGA-BR-6803     TCGA-BR-6852     TCGA-CD-5798     TCGA-CD-5799 
"IAPP WILD-TYPE" "IAPP WILD-TYPE" "IAPP WILD-TYPE" "IAPP WILD-TYPE" 
    TCGA-CD-5800     TCGA-CD-5801     TCGA-CD-5802     TCGA-CD-5803 
"IAPP WILD-TYPE" "IAPP WILD-TYPE" "IAPP WILD-TYPE" "IAPP WILD-TYPE" 
    TCGA-CD-5813     TCGA-CG-4300     TCGA-CG-4301     TCGA-CG-4304 
"IAPP WILD-TYPE" "IAPP WILD-TYPE" "IAPP WILD-TYPE" "IAPP WILD-TYPE" 
    TCGA-CG-4305     TCGA-CG-4306     TCGA-CG-4436     TCGA-CG-4437 
"IAPP WILD-TYPE" "IAPP WILD-TYPE" "IAPP WILD-TYPE" "IAPP WILD-TYPE" 
    TCGA-CG-4438     TCGA-CG-4440     TCGA-CG-4441     TCGA-CG-4443 
"IAPP WILD-TYPE" "IAPP WILD-TYPE" "IAPP WILD-TYPE" "IAPP WILD-TYPE" 
    TCGA-CG-4444     TCGA-CG-4449     TCGA-CG-4455     TCGA-CG-4460 
"IAPP WILD-TYPE" "IAPP WILD-TYPE" "IAPP WILD-TYPE" "IAPP WILD-TYPE" 
    TCGA-CG-4462     TCGA-CG-4465     TCGA-CG-4466     TCGA-CG-4469 
"IAPP WILD-TYPE" "IAPP WILD-TYPE"   "IAPP MUTATED" "IAPP WILD-TYPE" 
    TCGA-CG-4472     TCGA-CG-4474     TCGA-CG-4477     TCGA-CG-5716 
"IAPP WILD-TYPE" "IAPP WILD-TYPE" "IAPP WILD-TYPE" "IAPP WILD-TYPE" 
    TCGA-CG-5717     TCGA-CG-5718     TCGA-CG-5719     TCGA-CG-5720 
"IAPP WILD-TYPE" "IAPP WILD-TYPE" "IAPP WILD-TYPE" "IAPP WILD-TYPE" 
    TCGA-CG-5721     TCGA-CG-5722     TCGA-CG-5723     TCGA-CG-5724 
"IAPP WILD-TYPE" "IAPP WILD-TYPE" "IAPP WILD-TYPE" "IAPP WILD-TYPE" 
    TCGA-CG-5725     TCGA-CG-5726     TCGA-CG-5727     TCGA-CG-5728 
"IAPP WILD-TYPE" "IAPP WILD-TYPE" "IAPP WILD-TYPE" "IAPP WILD-TYPE" 
    TCGA-CG-5730     TCGA-CG-5732     TCGA-CG-5733     TCGA-CG-5734 
"IAPP WILD-TYPE" "IAPP WILD-TYPE" "IAPP WILD-TYPE" "IAPP WILD-TYPE" 
    TCGA-D7-5577     TCGA-D7-5578     TCGA-D7-5579     TCGA-D7-6518 
"IAPP WILD-TYPE" "IAPP WILD-TYPE" "IAPP WILD-TYPE" "IAPP WILD-TYPE" 
    TCGA-D7-6519     TCGA-D7-6520     TCGA-D7-6521     TCGA-D7-6522 
"IAPP WILD-TYPE" "IAPP WILD-TYPE" "IAPP WILD-TYPE"   "IAPP MUTATED" 
    TCGA-D7-6524     TCGA-D7-6525     TCGA-D7-6526     TCGA-D7-6527 
"IAPP WILD-TYPE" "IAPP WILD-TYPE" "IAPP WILD-TYPE" "IAPP WILD-TYPE" 
    TCGA-D7-6528     TCGA-D7-6815     TCGA-D7-6817     TCGA-D7-6818 
"IAPP WILD-TYPE" "IAPP WILD-TYPE" "IAPP WILD-TYPE" "IAPP WILD-TYPE" 
    TCGA-D7-6820     TCGA-D7-6822     TCGA-EQ-5647     TCGA-F1-6177 
"IAPP WILD-TYPE" "IAPP WILD-TYPE" "IAPP WILD-TYPE" "IAPP WILD-TYPE" 
    TCGA-F1-6874 
"IAPP WILD-TYPE" 
    TCGA-B7-5816     TCGA-B7-5818     TCGA-BR-6452     TCGA-BR-6455 
"IAPP WILD-TYPE" "IAPP WILD-TYPE" "IAPP WILD-TYPE" "IAPP WILD-TYPE" 
    TCGA-BR-6457     TCGA-BR-6458     TCGA-BR-6564     TCGA-BR-6565 
"IAPP WILD-TYPE" "IAPP WILD-TYPE" "IAPP WILD-TYPE" "IAPP WILD-TYPE" 
    TCGA-BR-6566     TCGA-BR-6705     TCGA-BR-6706     TCGA-BR-6707 
"IAPP WILD-TYPE" "IAPP WILD-TYPE" "IAPP WILD-TYPE" "IAPP WILD-TYPE" 
    TCGA-BR-6709     TCGA-BR-6710     TCGA-BR-6801     TCGA-BR-6802 
"IAPP WILD-TYPE" "IAPP WILD-TYPE" "IAPP WILD-TYPE" "IAPP WILD-TYPE" 
    TCGA-BR-6803     TCGA-BR-6852     TCGA-CD-5798     TCGA-CD-5799 
"IAPP WILD-TYPE" "IAPP WILD-TYPE" "IAPP WILD-TYPE" "IAPP WILD-TYPE" 
    TCGA-CD-5800     TCGA-CD-5801     TCGA-CD-5802     TCGA-CD-5803 
"IAPP WILD-TYPE" "IAPP WILD-TYPE" "IAPP WILD-TYPE" "IAPP WILD-TYPE" 
    TCGA-CD-5813     TCGA-CG-4300     TCGA-CG-4301     TCGA-CG-4304 
"IAPP WILD-TYPE" "IAPP WILD-TYPE" "IAPP WILD-TYPE" "IAPP WILD-TYPE" 
    TCGA-CG-4305     TCGA-CG-4306     TCGA-CG-4436     TCGA-CG-4437 
"IAPP WILD-TYPE" "IAPP WILD-TYPE" "IAPP WILD-TYPE" "IAPP WILD-TYPE" 
    TCGA-CG-4438     TCGA-CG-4440     TCGA-CG-4441     TCGA-CG-4443 
"IAPP WILD-TYPE" "IAPP WILD-TYPE" "IAPP WILD-TYPE" "IAPP WILD-TYPE" 
    TCGA-CG-4444     TCGA-CG-4449     TCGA-CG-4455     TCGA-CG-4460 
"IAPP WILD-TYPE" "IAPP WILD-TYPE" "IAPP WILD-TYPE" "IAPP WILD-TYPE" 
    TCGA-CG-4462     TCGA-CG-4465     TCGA-CG-4466     TCGA-CG-4469 
"IAPP WILD-TYPE" "IAPP WILD-TYPE"   "IAPP MUTATED" "IAPP WILD-TYPE" 
    TCGA-CG-4472     TCGA-CG-4474     TCGA-CG-4477     TCGA-CG-5716 
"IAPP WILD-TYPE" "IAPP WILD-TYPE" "IAPP WILD-TYPE" "IAPP WILD-TYPE" 
    TCGA-CG-5717     TCGA-CG-5718     TCGA-CG-5719     TCGA-CG-5720 
"IAPP WILD-TYPE" "IAPP WILD-TYPE" "IAPP WILD-TYPE" "IAPP WILD-TYPE" 
    TCGA-CG-5721     TCGA-CG-5722     TCGA-CG-5723     TCGA-CG-5724 
"IAPP WILD-TYPE" "IAPP WILD-TYPE" "IAPP WILD-TYPE" "IAPP WILD-TYPE" 
    TCGA-CG-5725     TCGA-CG-5726     TCGA-CG-5727     TCGA-CG-5728 
"IAPP WILD-TYPE" "IAPP WILD-TYPE" "IAPP WILD-TYPE" "IAPP WILD-TYPE" 
    TCGA-CG-5730     TCGA-CG-5732     TCGA-CG-5733     TCGA-CG-5734 
"IAPP WILD-TYPE" "IAPP WILD-TYPE" "IAPP WILD-TYPE" "IAPP WILD-TYPE" 
    TCGA-D7-5577     TCGA-D7-5578     TCGA-D7-5579     TCGA-D7-6518 
"IAPP WILD-TYPE" "IAPP WILD-TYPE" "IAPP WILD-TYPE" "IAPP WILD-TYPE" 
    TCGA-D7-6519     TCGA-D7-6520     TCGA-D7-6521     TCGA-D7-6522 
"IAPP WILD-TYPE" "IAPP WILD-TYPE" "IAPP WILD-TYPE"   "IAPP MUTATED" 
    TCGA-D7-6524     TCGA-D7-6525     TCGA-D7-6526     TCGA-D7-6527 
"IAPP WILD-TYPE" "IAPP WILD-TYPE" "IAPP WILD-TYPE" "IAPP WILD-TYPE" 
    TCGA-D7-6528     TCGA-D7-6815     TCGA-D7-6817     TCGA-D7-6818 
"IAPP WILD-TYPE" "IAPP WILD-TYPE" "IAPP WILD-TYPE" "IAPP WILD-TYPE" 
    TCGA-D7-6820     TCGA-D7-6822     TCGA-EQ-5647     TCGA-F1-6177 
"IAPP WILD-TYPE" "IAPP WILD-TYPE" "IAPP WILD-TYPE" "IAPP WILD-TYPE" 
    TCGA-F1-6874 
"IAPP WILD-TYPE" 
    TCGA-B7-5816     TCGA-B7-5818     TCGA-BR-6452     TCGA-BR-6455 
"IAPP WILD-TYPE" "IAPP WILD-TYPE" "IAPP WILD-TYPE" "IAPP WILD-TYPE" 
    TCGA-BR-6457     TCGA-BR-6458     TCGA-BR-6564     TCGA-BR-6565 
"IAPP WILD-TYPE" "IAPP WILD-TYPE" "IAPP WILD-TYPE" "IAPP WILD-TYPE" 
    TCGA-BR-6566     TCGA-BR-6705     TCGA-BR-6706     TCGA-BR-6707 
"IAPP WILD-TYPE" "IAPP WILD-TYPE" "IAPP WILD-TYPE" "IAPP WILD-TYPE" 
    TCGA-BR-6709     TCGA-BR-6710     TCGA-BR-6801     TCGA-BR-6802 
"IAPP WILD-TYPE" "IAPP WILD-TYPE" "IAPP WILD-TYPE" "IAPP WILD-TYPE" 
    TCGA-BR-6803     TCGA-BR-6852     TCGA-CD-5798     TCGA-CD-5799 
"IAPP WILD-TYPE" "IAPP WILD-TYPE" "IAPP WILD-TYPE" "IAPP WILD-TYPE" 
    TCGA-CD-5800     TCGA-CD-5801     TCGA-CD-5802     TCGA-CD-5803 
"IAPP WILD-TYPE" "IAPP WILD-TYPE" "IAPP WILD-TYPE" "IAPP WILD-TYPE" 
    TCGA-CD-5813     TCGA-CG-4300     TCGA-CG-4301     TCGA-CG-4304 
"IAPP WILD-TYPE" "IAPP WILD-TYPE" "IAPP WILD-TYPE" "IAPP WILD-TYPE" 
    TCGA-CG-4305     TCGA-CG-4306     TCGA-CG-4436     TCGA-CG-4437 
"IAPP WILD-TYPE" "IAPP WILD-TYPE" "IAPP WILD-TYPE" "IAPP WILD-TYPE" 
    TCGA-CG-4438     TCGA-CG-4440     TCGA-CG-4441     TCGA-CG-4443 
"IAPP WILD-TYPE" "IAPP WILD-TYPE" "IAPP WILD-TYPE" "IAPP WILD-TYPE" 
    TCGA-CG-4444     TCGA-CG-4449     TCGA-CG-4455     TCGA-CG-4460 
"IAPP WILD-TYPE" "IAPP WILD-TYPE" "IAPP WILD-TYPE" "IAPP WILD-TYPE" 
    TCGA-CG-4462     TCGA-CG-4465     TCGA-CG-4466     TCGA-CG-4469 
"IAPP WILD-TYPE" "IAPP WILD-TYPE"   "IAPP MUTATED" "IAPP WILD-TYPE" 
    TCGA-CG-4472     TCGA-CG-4474     TCGA-CG-4477     TCGA-CG-5716 
"IAPP WILD-TYPE" "IAPP WILD-TYPE" "IAPP WILD-TYPE" "IAPP WILD-TYPE" 
    TCGA-CG-5717     TCGA-CG-5718     TCGA-CG-5719     TCGA-CG-5720 
"IAPP WILD-TYPE" "IAPP WILD-TYPE" "IAPP WILD-TYPE" "IAPP WILD-TYPE" 
    TCGA-CG-5721     TCGA-CG-5722     TCGA-CG-5723     TCGA-CG-5724 
"IAPP WILD-TYPE" "IAPP WILD-TYPE" "IAPP WILD-TYPE" "IAPP WILD-TYPE" 
    TCGA-CG-5725     TCGA-CG-5726     TCGA-CG-5727     TCGA-CG-5728 
"IAPP WILD-TYPE" "IAPP WILD-TYPE" "IAPP WILD-TYPE" "IAPP WILD-TYPE" 
    TCGA-CG-5730     TCGA-CG-5732     TCGA-CG-5733     TCGA-CG-5734 
"IAPP WILD-TYPE" "IAPP WILD-TYPE" "IAPP WILD-TYPE" "IAPP WILD-TYPE" 
    TCGA-D7-5577     TCGA-D7-5578     TCGA-D7-5579     TCGA-D7-6518 
"IAPP WILD-TYPE" "IAPP WILD-TYPE" "IAPP WILD-TYPE" "IAPP WILD-TYPE" 
    TCGA-D7-6519     TCGA-D7-6520     TCGA-D7-6521     TCGA-D7-6522 
"IAPP WILD-TYPE" "IAPP WILD-TYPE" "IAPP WILD-TYPE"   "IAPP MUTATED" 
    TCGA-D7-6524     TCGA-D7-6525     TCGA-D7-6526     TCGA-D7-6527 
"IAPP WILD-TYPE" "IAPP WILD-TYPE" "IAPP WILD-TYPE" "IAPP WILD-TYPE" 
    TCGA-D7-6528     TCGA-D7-6815     TCGA-D7-6817     TCGA-D7-6818 
"IAPP WILD-TYPE" "IAPP WILD-TYPE" "IAPP WILD-TYPE" "IAPP WILD-TYPE" 
    TCGA-D7-6820     TCGA-D7-6822     TCGA-EQ-5647     TCGA-F1-6177 
"IAPP WILD-TYPE" "IAPP WILD-TYPE" "IAPP WILD-TYPE" "IAPP WILD-TYPE" 
    TCGA-F1-6874 
"IAPP WILD-TYPE" 
[1] "Remove cluster labels:" "IAPP MUTATED"          
clus
  IAPP MUTATED IAPP WILD-TYPE 
             2             83 
    TCGA-B7-5816     TCGA-B7-5818     TCGA-BR-6452     TCGA-BR-6455 
"IAPP WILD-TYPE" "IAPP WILD-TYPE" "IAPP WILD-TYPE" "IAPP WILD-TYPE" 
    TCGA-BR-6457     TCGA-BR-6458     TCGA-BR-6564     TCGA-BR-6565 
"IAPP WILD-TYPE" "IAPP WILD-TYPE" "IAPP WILD-TYPE" "IAPP WILD-TYPE" 
    TCGA-BR-6566     TCGA-BR-6705     TCGA-BR-6706     TCGA-BR-6707 
"IAPP WILD-TYPE" "IAPP WILD-TYPE" "IAPP WILD-TYPE" "IAPP WILD-TYPE" 
    TCGA-BR-6709     TCGA-BR-6710     TCGA-BR-6801     TCGA-BR-6802 
"IAPP WILD-TYPE" "IAPP WILD-TYPE" "IAPP WILD-TYPE" "IAPP WILD-TYPE" 
    TCGA-BR-6803     TCGA-BR-6852     TCGA-CD-5798     TCGA-CD-5799 
"IAPP WILD-TYPE" "IAPP WILD-TYPE" "IAPP WILD-TYPE" "IAPP WILD-TYPE" 
    TCGA-CD-5800     TCGA-CD-5801     TCGA-CD-5802     TCGA-CD-5803 
"IAPP WILD-TYPE" "IAPP WILD-TYPE" "IAPP WILD-TYPE" "IAPP WILD-TYPE" 
    TCGA-CD-5813     TCGA-CG-4300     TCGA-CG-4301     TCGA-CG-4304 
"IAPP WILD-TYPE" "IAPP WILD-TYPE" "IAPP WILD-TYPE" "IAPP WILD-TYPE" 
    TCGA-CG-4305     TCGA-CG-4306     TCGA-CG-4436     TCGA-CG-4437 
"IAPP WILD-TYPE" "IAPP WILD-TYPE" "IAPP WILD-TYPE" "IAPP WILD-TYPE" 
    TCGA-CG-4438     TCGA-CG-4440     TCGA-CG-4441     TCGA-CG-4443 
"IAPP WILD-TYPE" "IAPP WILD-TYPE" "IAPP WILD-TYPE" "IAPP WILD-TYPE" 
    TCGA-CG-4444     TCGA-CG-4449     TCGA-CG-4455     TCGA-CG-4460 
"IAPP WILD-TYPE" "IAPP WILD-TYPE" "IAPP WILD-TYPE" "IAPP WILD-TYPE" 
    TCGA-CG-4462     TCGA-CG-4465     TCGA-CG-4469     TCGA-CG-4472 
"IAPP WILD-TYPE" "IAPP WILD-TYPE" "IAPP WILD-TYPE" "IAPP WILD-TYPE" 
    TCGA-CG-4474     TCGA-CG-4477     TCGA-CG-5716     TCGA-CG-5717 
"IAPP WILD-TYPE" "IAPP WILD-TYPE" "IAPP WILD-TYPE" "IAPP WILD-TYPE" 
    TCGA-CG-5718     TCGA-CG-5719     TCGA-CG-5720     TCGA-CG-5721 
"IAPP WILD-TYPE" "IAPP WILD-TYPE" "IAPP WILD-TYPE" "IAPP WILD-TYPE" 
    TCGA-CG-5722     TCGA-CG-5723     TCGA-CG-5724     TCGA-CG-5725 
"IAPP WILD-TYPE" "IAPP WILD-TYPE" "IAPP WILD-TYPE" "IAPP WILD-TYPE" 
    TCGA-CG-5726     TCGA-CG-5727     TCGA-CG-5728     TCGA-CG-5730 
"IAPP WILD-TYPE" "IAPP WILD-TYPE" "IAPP WILD-TYPE" "IAPP WILD-TYPE" 
    TCGA-CG-5732     TCGA-CG-5733     TCGA-CG-5734     TCGA-D7-5577 
"IAPP WILD-TYPE" "IAPP WILD-TYPE" "IAPP WILD-TYPE" "IAPP WILD-TYPE" 
    TCGA-D7-5578     TCGA-D7-5579     TCGA-D7-6518     TCGA-D7-6519 
"IAPP WILD-TYPE" "IAPP WILD-TYPE" "IAPP WILD-TYPE" "IAPP WILD-TYPE" 
    TCGA-D7-6520     TCGA-D7-6521     TCGA-D7-6524     TCGA-D7-6525 
"IAPP WILD-TYPE" "IAPP WILD-TYPE" "IAPP WILD-TYPE" "IAPP WILD-TYPE" 
    TCGA-D7-6526     TCGA-D7-6527     TCGA-D7-6528     TCGA-D7-6815 
"IAPP WILD-TYPE" "IAPP WILD-TYPE" "IAPP WILD-TYPE" "IAPP WILD-TYPE" 
    TCGA-D7-6817     TCGA-D7-6818     TCGA-D7-6820     TCGA-D7-6822 
"IAPP WILD-TYPE" "IAPP WILD-TYPE" "IAPP WILD-TYPE" "IAPP WILD-TYPE" 
    TCGA-EQ-5647     TCGA-F1-6177     TCGA-F1-6874 
"IAPP WILD-TYPE" "IAPP WILD-TYPE" "IAPP WILD-TYPE" 
D28V2, continuous
D28V3, binary
[1] "tbl2"
                cls
clus             [,1] [,2]
  IAPP MUTATED      1    3
  IAPP WILD-TYPE   45   67
        clus
vv       IAPP MUTATED IAPP WILD-TYPE
  FEMALE            1             45
  MALE              3             67
D28V4, multiclass
D28V5, multiclass
    clus
vv   IAPP MUTATED IAPP WILD-TYPE
  T1            0              4
  T2            2             44
  T3            1             40
  T4            0             15
D28V6, multiclass
    clus
vv   IAPP MUTATED IAPP WILD-TYPE
  N0            2             33
  N1            2             37
  N2            0             19
  N3            0             12
D28V7, multiclass
    clus
vv   IAPP MUTATED IAPP WILD-TYPE
  M0            3             96
  M1            0             13
  MX            1              3
D28V8, multiclass
     clus
vv    IAPP MUTATED IAPP WILD-TYPE
  I              2             16
  II             0             32
  III            1             28
  IV             0             21

Clustering(29) Variable = IRF2 MUTATION ANALYSIS
D29V1, survival
                sevent
clus2             0  1
  IRF2 MUTATED    2  1
  IRF2 WILD-TYPE 69 13
  IRF2 MUTATED IRF2 WILD-TYPE 
             3             82 
  IRF2 MUTATED IRF2 WILD-TYPE 
             1             13 
$`IRF2 MUTATED`
TCGA-B7-5816 TCGA-BR-6452 TCGA-CG-5726 
        5.62         0.95        28.96 

$`IRF2 WILD-TYPE`
TCGA-B7-5818 TCGA-BR-6455 TCGA-BR-6457 TCGA-BR-6458 TCGA-BR-6564 TCGA-BR-6565 
        0.10         1.41         1.35         1.35         0.82         0.62 
TCGA-BR-6566 TCGA-BR-6705 TCGA-BR-6706 TCGA-BR-6707 TCGA-BR-6709 TCGA-BR-6710 
        0.62         1.71         2.17         0.99         1.22         0.66 
TCGA-BR-6801 TCGA-BR-6802 TCGA-BR-6803 TCGA-BR-6852 TCGA-CD-5798 TCGA-CD-5799 
        1.12         0.76         0.66         0.26         0.82         0.69 
TCGA-CD-5800 TCGA-CD-5801 TCGA-CD-5802 TCGA-CD-5803 TCGA-CD-5813 TCGA-CG-4300 
        0.36         0.49         0.30         0.07         0.39        20.02 
TCGA-CG-4301 TCGA-CG-4304 TCGA-CG-4305 TCGA-CG-4306 TCGA-CG-4436 TCGA-CG-4437 
        3.02        27.02        15.95         1.02        52.96         8.05 
TCGA-CG-4438 TCGA-CG-4440 TCGA-CG-4441 TCGA-CG-4443 TCGA-CG-4444 TCGA-CG-4449 
       54.05         4.01        14.01        29.98        47.05        19.07 
TCGA-CG-4455 TCGA-CG-4460 TCGA-CG-4462 TCGA-CG-4465 TCGA-CG-4466 TCGA-CG-4469 
       12.03        21.99         1.02         8.98        18.94         7.07 
TCGA-CG-4472 TCGA-CG-4474 TCGA-CG-4477 TCGA-CG-5716 TCGA-CG-5717 TCGA-CG-5718 
       12.00         1.02         1.02         1.02         6.94         1.02 
TCGA-CG-5719 TCGA-CG-5720 TCGA-CG-5721 TCGA-CG-5722 TCGA-CG-5723 TCGA-CG-5724 
        1.02         0.99         5.98         0.95        70.06        12.03 
TCGA-CG-5725 TCGA-CG-5727 TCGA-CG-5728 TCGA-CG-5730 TCGA-CG-5732 TCGA-CG-5733 
       15.02        31.04        65.10         4.01        55.04        21.07 
TCGA-CG-5734 TCGA-D7-5577 TCGA-D7-5578 TCGA-D7-5579 TCGA-D7-6518 TCGA-D7-6519 
        7.99         8.65         3.58         4.54         9.80        15.65 
TCGA-D7-6520 TCGA-D7-6521 TCGA-D7-6522 TCGA-D7-6524 TCGA-D7-6525 TCGA-D7-6526 
        9.63         8.19         6.90         0.69         5.95         6.61 
TCGA-D7-6527 TCGA-D7-6528 TCGA-D7-6815 TCGA-D7-6817 TCGA-D7-6818 TCGA-D7-6820 
        4.14         1.68         3.65         4.70         4.04         2.93 
TCGA-D7-6822 TCGA-EQ-5647 TCGA-F1-6177 TCGA-F1-6874 
        4.27         0.62         6.54         2.01 

  IRF2 MUTATED IRF2 WILD-TYPE 
          0.95           0.07 
  IRF2 MUTATED IRF2 WILD-TYPE 
         28.96          70.06 
  IRF2 MUTATED IRF2 WILD-TYPE 
          5.62           4.01 
[1] "0.9 - 29.0 (5.6)" "0.1 - 70.1 (4.0)"
    TCGA-B7-5816     TCGA-B7-5818     TCGA-BR-6452     TCGA-BR-6455 
  "IRF2 MUTATED" "IRF2 WILD-TYPE"   "IRF2 MUTATED" "IRF2 WILD-TYPE" 
    TCGA-BR-6457     TCGA-BR-6458     TCGA-BR-6564     TCGA-BR-6565 
"IRF2 WILD-TYPE" "IRF2 WILD-TYPE" "IRF2 WILD-TYPE" "IRF2 WILD-TYPE" 
    TCGA-BR-6566     TCGA-BR-6705     TCGA-BR-6706     TCGA-BR-6707 
"IRF2 WILD-TYPE" "IRF2 WILD-TYPE" "IRF2 WILD-TYPE" "IRF2 WILD-TYPE" 
    TCGA-BR-6709     TCGA-BR-6710     TCGA-BR-6801     TCGA-BR-6802 
"IRF2 WILD-TYPE" "IRF2 WILD-TYPE" "IRF2 WILD-TYPE" "IRF2 WILD-TYPE" 
    TCGA-BR-6803     TCGA-BR-6852     TCGA-CD-5798     TCGA-CD-5799 
"IRF2 WILD-TYPE" "IRF2 WILD-TYPE" "IRF2 WILD-TYPE" "IRF2 WILD-TYPE" 
    TCGA-CD-5800     TCGA-CD-5801     TCGA-CD-5802     TCGA-CD-5803 
"IRF2 WILD-TYPE" "IRF2 WILD-TYPE" "IRF2 WILD-TYPE" "IRF2 WILD-TYPE" 
    TCGA-CD-5813     TCGA-CG-4300     TCGA-CG-4301     TCGA-CG-4304 
"IRF2 WILD-TYPE" "IRF2 WILD-TYPE" "IRF2 WILD-TYPE" "IRF2 WILD-TYPE" 
    TCGA-CG-4305     TCGA-CG-4306     TCGA-CG-4436     TCGA-CG-4437 
"IRF2 WILD-TYPE" "IRF2 WILD-TYPE" "IRF2 WILD-TYPE" "IRF2 WILD-TYPE" 
    TCGA-CG-4438     TCGA-CG-4440     TCGA-CG-4441     TCGA-CG-4443 
"IRF2 WILD-TYPE" "IRF2 WILD-TYPE" "IRF2 WILD-TYPE" "IRF2 WILD-TYPE" 
    TCGA-CG-4444     TCGA-CG-4449     TCGA-CG-4455     TCGA-CG-4460 
"IRF2 WILD-TYPE" "IRF2 WILD-TYPE" "IRF2 WILD-TYPE" "IRF2 WILD-TYPE" 
    TCGA-CG-4462     TCGA-CG-4465     TCGA-CG-4466     TCGA-CG-4469 
"IRF2 WILD-TYPE" "IRF2 WILD-TYPE" "IRF2 WILD-TYPE" "IRF2 WILD-TYPE" 
    TCGA-CG-4472     TCGA-CG-4474     TCGA-CG-4477     TCGA-CG-5716 
"IRF2 WILD-TYPE" "IRF2 WILD-TYPE" "IRF2 WILD-TYPE" "IRF2 WILD-TYPE" 
    TCGA-CG-5717     TCGA-CG-5718     TCGA-CG-5719     TCGA-CG-5720 
"IRF2 WILD-TYPE" "IRF2 WILD-TYPE" "IRF2 WILD-TYPE" "IRF2 WILD-TYPE" 
    TCGA-CG-5721     TCGA-CG-5722     TCGA-CG-5723     TCGA-CG-5724 
"IRF2 WILD-TYPE" "IRF2 WILD-TYPE" "IRF2 WILD-TYPE" "IRF2 WILD-TYPE" 
    TCGA-CG-5725     TCGA-CG-5726     TCGA-CG-5727     TCGA-CG-5728 
"IRF2 WILD-TYPE"   "IRF2 MUTATED" "IRF2 WILD-TYPE" "IRF2 WILD-TYPE" 
    TCGA-CG-5730     TCGA-CG-5732     TCGA-CG-5733     TCGA-CG-5734 
"IRF2 WILD-TYPE" "IRF2 WILD-TYPE" "IRF2 WILD-TYPE" "IRF2 WILD-TYPE" 
    TCGA-D7-5577     TCGA-D7-5578     TCGA-D7-5579     TCGA-D7-6518 
"IRF2 WILD-TYPE" "IRF2 WILD-TYPE" "IRF2 WILD-TYPE" "IRF2 WILD-TYPE" 
    TCGA-D7-6519     TCGA-D7-6520     TCGA-D7-6521     TCGA-D7-6522 
"IRF2 WILD-TYPE" "IRF2 WILD-TYPE" "IRF2 WILD-TYPE" "IRF2 WILD-TYPE" 
    TCGA-D7-6524     TCGA-D7-6525     TCGA-D7-6526     TCGA-D7-6527 
"IRF2 WILD-TYPE" "IRF2 WILD-TYPE" "IRF2 WILD-TYPE" "IRF2 WILD-TYPE" 
    TCGA-D7-6528     TCGA-D7-6815     TCGA-D7-6817     TCGA-D7-6818 
"IRF2 WILD-TYPE" "IRF2 WILD-TYPE" "IRF2 WILD-TYPE" "IRF2 WILD-TYPE" 
    TCGA-D7-6820     TCGA-D7-6822     TCGA-EQ-5647     TCGA-F1-6177 
"IRF2 WILD-TYPE" "IRF2 WILD-TYPE" "IRF2 WILD-TYPE" "IRF2 WILD-TYPE" 
    TCGA-F1-6874 
"IRF2 WILD-TYPE" 
    TCGA-B7-5816     TCGA-B7-5818     TCGA-BR-6452     TCGA-BR-6455 
  "IRF2 MUTATED" "IRF2 WILD-TYPE"   "IRF2 MUTATED" "IRF2 WILD-TYPE" 
    TCGA-BR-6457     TCGA-BR-6458     TCGA-BR-6564     TCGA-BR-6565 
"IRF2 WILD-TYPE" "IRF2 WILD-TYPE" "IRF2 WILD-TYPE" "IRF2 WILD-TYPE" 
    TCGA-BR-6566     TCGA-BR-6705     TCGA-BR-6706     TCGA-BR-6707 
"IRF2 WILD-TYPE" "IRF2 WILD-TYPE" "IRF2 WILD-TYPE" "IRF2 WILD-TYPE" 
    TCGA-BR-6709     TCGA-BR-6710     TCGA-BR-6801     TCGA-BR-6802 
"IRF2 WILD-TYPE" "IRF2 WILD-TYPE" "IRF2 WILD-TYPE" "IRF2 WILD-TYPE" 
    TCGA-BR-6803     TCGA-BR-6852     TCGA-CD-5798     TCGA-CD-5799 
"IRF2 WILD-TYPE" "IRF2 WILD-TYPE" "IRF2 WILD-TYPE" "IRF2 WILD-TYPE" 
    TCGA-CD-5800     TCGA-CD-5801     TCGA-CD-5802     TCGA-CD-5803 
"IRF2 WILD-TYPE" "IRF2 WILD-TYPE" "IRF2 WILD-TYPE" "IRF2 WILD-TYPE" 
    TCGA-CD-5813     TCGA-CG-4300     TCGA-CG-4301     TCGA-CG-4304 
"IRF2 WILD-TYPE" "IRF2 WILD-TYPE" "IRF2 WILD-TYPE" "IRF2 WILD-TYPE" 
    TCGA-CG-4305     TCGA-CG-4306     TCGA-CG-4436     TCGA-CG-4437 
"IRF2 WILD-TYPE" "IRF2 WILD-TYPE" "IRF2 WILD-TYPE" "IRF2 WILD-TYPE" 
    TCGA-CG-4438     TCGA-CG-4440     TCGA-CG-4441     TCGA-CG-4443 
"IRF2 WILD-TYPE" "IRF2 WILD-TYPE" "IRF2 WILD-TYPE" "IRF2 WILD-TYPE" 
    TCGA-CG-4444     TCGA-CG-4449     TCGA-CG-4455     TCGA-CG-4460 
"IRF2 WILD-TYPE" "IRF2 WILD-TYPE" "IRF2 WILD-TYPE" "IRF2 WILD-TYPE" 
    TCGA-CG-4462     TCGA-CG-4465     TCGA-CG-4466     TCGA-CG-4469 
"IRF2 WILD-TYPE" "IRF2 WILD-TYPE" "IRF2 WILD-TYPE" "IRF2 WILD-TYPE" 
    TCGA-CG-4472     TCGA-CG-4474     TCGA-CG-4477     TCGA-CG-5716 
"IRF2 WILD-TYPE" "IRF2 WILD-TYPE" "IRF2 WILD-TYPE" "IRF2 WILD-TYPE" 
    TCGA-CG-5717     TCGA-CG-5718     TCGA-CG-5719     TCGA-CG-5720 
"IRF2 WILD-TYPE" "IRF2 WILD-TYPE" "IRF2 WILD-TYPE" "IRF2 WILD-TYPE" 
    TCGA-CG-5721     TCGA-CG-5722     TCGA-CG-5723     TCGA-CG-5724 
"IRF2 WILD-TYPE" "IRF2 WILD-TYPE" "IRF2 WILD-TYPE" "IRF2 WILD-TYPE" 
    TCGA-CG-5725     TCGA-CG-5726     TCGA-CG-5727     TCGA-CG-5728 
"IRF2 WILD-TYPE"   "IRF2 MUTATED" "IRF2 WILD-TYPE" "IRF2 WILD-TYPE" 
    TCGA-CG-5730     TCGA-CG-5732     TCGA-CG-5733     TCGA-CG-5734 
"IRF2 WILD-TYPE" "IRF2 WILD-TYPE" "IRF2 WILD-TYPE" "IRF2 WILD-TYPE" 
    TCGA-D7-5577     TCGA-D7-5578     TCGA-D7-5579     TCGA-D7-6518 
"IRF2 WILD-TYPE" "IRF2 WILD-TYPE" "IRF2 WILD-TYPE" "IRF2 WILD-TYPE" 
    TCGA-D7-6519     TCGA-D7-6520     TCGA-D7-6521     TCGA-D7-6522 
"IRF2 WILD-TYPE" "IRF2 WILD-TYPE" "IRF2 WILD-TYPE" "IRF2 WILD-TYPE" 
    TCGA-D7-6524     TCGA-D7-6525     TCGA-D7-6526     TCGA-D7-6527 
"IRF2 WILD-TYPE" "IRF2 WILD-TYPE" "IRF2 WILD-TYPE" "IRF2 WILD-TYPE" 
    TCGA-D7-6528     TCGA-D7-6815     TCGA-D7-6817     TCGA-D7-6818 
"IRF2 WILD-TYPE" "IRF2 WILD-TYPE" "IRF2 WILD-TYPE" "IRF2 WILD-TYPE" 
    TCGA-D7-6820     TCGA-D7-6822     TCGA-EQ-5647     TCGA-F1-6177 
"IRF2 WILD-TYPE" "IRF2 WILD-TYPE" "IRF2 WILD-TYPE" "IRF2 WILD-TYPE" 
    TCGA-F1-6874 
"IRF2 WILD-TYPE" 
    TCGA-B7-5816     TCGA-B7-5818     TCGA-BR-6452     TCGA-BR-6455 
  "IRF2 MUTATED" "IRF2 WILD-TYPE"   "IRF2 MUTATED" "IRF2 WILD-TYPE" 
    TCGA-BR-6457     TCGA-BR-6458     TCGA-BR-6564     TCGA-BR-6565 
"IRF2 WILD-TYPE" "IRF2 WILD-TYPE" "IRF2 WILD-TYPE" "IRF2 WILD-TYPE" 
    TCGA-BR-6566     TCGA-BR-6705     TCGA-BR-6706     TCGA-BR-6707 
"IRF2 WILD-TYPE" "IRF2 WILD-TYPE" "IRF2 WILD-TYPE" "IRF2 WILD-TYPE" 
    TCGA-BR-6709     TCGA-BR-6710     TCGA-BR-6801     TCGA-BR-6802 
"IRF2 WILD-TYPE" "IRF2 WILD-TYPE" "IRF2 WILD-TYPE" "IRF2 WILD-TYPE" 
    TCGA-BR-6803     TCGA-BR-6852     TCGA-CD-5798     TCGA-CD-5799 
"IRF2 WILD-TYPE" "IRF2 WILD-TYPE" "IRF2 WILD-TYPE" "IRF2 WILD-TYPE" 
    TCGA-CD-5800     TCGA-CD-5801     TCGA-CD-5802     TCGA-CD-5803 
"IRF2 WILD-TYPE" "IRF2 WILD-TYPE" "IRF2 WILD-TYPE" "IRF2 WILD-TYPE" 
    TCGA-CD-5813     TCGA-CG-4300     TCGA-CG-4301     TCGA-CG-4304 
"IRF2 WILD-TYPE" "IRF2 WILD-TYPE" "IRF2 WILD-TYPE" "IRF2 WILD-TYPE" 
    TCGA-CG-4305     TCGA-CG-4306     TCGA-CG-4436     TCGA-CG-4437 
"IRF2 WILD-TYPE" "IRF2 WILD-TYPE" "IRF2 WILD-TYPE" "IRF2 WILD-TYPE" 
    TCGA-CG-4438     TCGA-CG-4440     TCGA-CG-4441     TCGA-CG-4443 
"IRF2 WILD-TYPE" "IRF2 WILD-TYPE" "IRF2 WILD-TYPE" "IRF2 WILD-TYPE" 
    TCGA-CG-4444     TCGA-CG-4449     TCGA-CG-4455     TCGA-CG-4460 
"IRF2 WILD-TYPE" "IRF2 WILD-TYPE" "IRF2 WILD-TYPE" "IRF2 WILD-TYPE" 
    TCGA-CG-4462     TCGA-CG-4465     TCGA-CG-4466     TCGA-CG-4469 
"IRF2 WILD-TYPE" "IRF2 WILD-TYPE" "IRF2 WILD-TYPE" "IRF2 WILD-TYPE" 
    TCGA-CG-4472     TCGA-CG-4474     TCGA-CG-4477     TCGA-CG-5716 
"IRF2 WILD-TYPE" "IRF2 WILD-TYPE" "IRF2 WILD-TYPE" "IRF2 WILD-TYPE" 
    TCGA-CG-5717     TCGA-CG-5718     TCGA-CG-5719     TCGA-CG-5720 
"IRF2 WILD-TYPE" "IRF2 WILD-TYPE" "IRF2 WILD-TYPE" "IRF2 WILD-TYPE" 
    TCGA-CG-5721     TCGA-CG-5722     TCGA-CG-5723     TCGA-CG-5724 
"IRF2 WILD-TYPE" "IRF2 WILD-TYPE" "IRF2 WILD-TYPE" "IRF2 WILD-TYPE" 
    TCGA-CG-5725     TCGA-CG-5726     TCGA-CG-5727     TCGA-CG-5728 
"IRF2 WILD-TYPE"   "IRF2 MUTATED" "IRF2 WILD-TYPE" "IRF2 WILD-TYPE" 
    TCGA-CG-5730     TCGA-CG-5732     TCGA-CG-5733     TCGA-CG-5734 
"IRF2 WILD-TYPE" "IRF2 WILD-TYPE" "IRF2 WILD-TYPE" "IRF2 WILD-TYPE" 
    TCGA-D7-5577     TCGA-D7-5578     TCGA-D7-5579     TCGA-D7-6518 
"IRF2 WILD-TYPE" "IRF2 WILD-TYPE" "IRF2 WILD-TYPE" "IRF2 WILD-TYPE" 
    TCGA-D7-6519     TCGA-D7-6520     TCGA-D7-6521     TCGA-D7-6522 
"IRF2 WILD-TYPE" "IRF2 WILD-TYPE" "IRF2 WILD-TYPE" "IRF2 WILD-TYPE" 
    TCGA-D7-6524     TCGA-D7-6525     TCGA-D7-6526     TCGA-D7-6527 
"IRF2 WILD-TYPE" "IRF2 WILD-TYPE" "IRF2 WILD-TYPE" "IRF2 WILD-TYPE" 
    TCGA-D7-6528     TCGA-D7-6815     TCGA-D7-6817     TCGA-D7-6818 
"IRF2 WILD-TYPE" "IRF2 WILD-TYPE" "IRF2 WILD-TYPE" "IRF2 WILD-TYPE" 
    TCGA-D7-6820     TCGA-D7-6822     TCGA-EQ-5647     TCGA-F1-6177 
"IRF2 WILD-TYPE" "IRF2 WILD-TYPE" "IRF2 WILD-TYPE" "IRF2 WILD-TYPE" 
    TCGA-F1-6874 
"IRF2 WILD-TYPE" 
[1] "hr=" "1.4"
D29V2, continuous
D29V3, binary
[1] "tbl2"
                cls
clus             [,1] [,2]
  IRF2 MUTATED      6    2
  IRF2 WILD-TYPE   40   68
        clus
vv       IRF2 MUTATED IRF2 WILD-TYPE
  FEMALE            6             40
  MALE              2             68
D29V4, multiclass
D29V5, multiclass
    clus
vv   IRF2 MUTATED IRF2 WILD-TYPE
  T1            1              3
  T2            0             46
  T3            2             39
  T4            2             13
D29V6, multiclass
    clus
vv   IRF2 MUTATED IRF2 WILD-TYPE
  N0            3             32
  N1            2             37
  N2            1             18
  N3            0             12
D29V7, multiclass
    clus
vv   IRF2 MUTATED IRF2 WILD-TYPE
  M0            7             92
  M1            0             13
  MX            1              3
D29V8, multiclass
     clus
vv    IRF2 MUTATED IRF2 WILD-TYPE
  I              1             17
  II             1             31
  III            2             27
  IV             1             20

Clustering(30) Variable = CDH20 MUTATION ANALYSIS
D30V1, survival
                 sevent
clus2              0  1
  CDH20 MUTATED    6  2
  CDH20 WILD-TYPE 65 12
  CDH20 MUTATED CDH20 WILD-TYPE 
              8              77 
  CDH20 MUTATED CDH20 WILD-TYPE 
              2              12 
$`CDH20 MUTATED`
TCGA-B7-5816 TCGA-BR-6452 TCGA-BR-6852 TCGA-CG-4305 TCGA-CG-4306 TCGA-CG-4469 
        5.62         0.95         0.26        15.95         1.02         7.07 
TCGA-CG-5728 TCGA-D7-6528 
       65.10         1.68 

$`CDH20 WILD-TYPE`
TCGA-B7-5818 TCGA-BR-6455 TCGA-BR-6457 TCGA-BR-6458 TCGA-BR-6564 TCGA-BR-6565 
        0.10         1.41         1.35         1.35         0.82         0.62 
TCGA-BR-6566 TCGA-BR-6705 TCGA-BR-6706 TCGA-BR-6707 TCGA-BR-6709 TCGA-BR-6710 
        0.62         1.71         2.17         0.99         1.22         0.66 
TCGA-BR-6801 TCGA-BR-6802 TCGA-BR-6803 TCGA-CD-5798 TCGA-CD-5799 TCGA-CD-5800 
        1.12         0.76         0.66         0.82         0.69         0.36 
TCGA-CD-5801 TCGA-CD-5802 TCGA-CD-5803 TCGA-CD-5813 TCGA-CG-4300 TCGA-CG-4301 
        0.49         0.30         0.07         0.39        20.02         3.02 
TCGA-CG-4304 TCGA-CG-4436 TCGA-CG-4437 TCGA-CG-4438 TCGA-CG-4440 TCGA-CG-4441 
       27.02        52.96         8.05        54.05         4.01        14.01 
TCGA-CG-4443 TCGA-CG-4444 TCGA-CG-4449 TCGA-CG-4455 TCGA-CG-4460 TCGA-CG-4462 
       29.98        47.05        19.07        12.03        21.99         1.02 
TCGA-CG-4465 TCGA-CG-4466 TCGA-CG-4472 TCGA-CG-4474 TCGA-CG-4477 TCGA-CG-5716 
        8.98        18.94        12.00         1.02         1.02         1.02 
TCGA-CG-5717 TCGA-CG-5718 TCGA-CG-5719 TCGA-CG-5720 TCGA-CG-5721 TCGA-CG-5722 
        6.94         1.02         1.02         0.99         5.98         0.95 
TCGA-CG-5723 TCGA-CG-5724 TCGA-CG-5725 TCGA-CG-5726 TCGA-CG-5727 TCGA-CG-5730 
       70.06        12.03        15.02        28.96        31.04         4.01 
TCGA-CG-5732 TCGA-CG-5733 TCGA-CG-5734 TCGA-D7-5577 TCGA-D7-5578 TCGA-D7-5579 
       55.04        21.07         7.99         8.65         3.58         4.54 
TCGA-D7-6518 TCGA-D7-6519 TCGA-D7-6520 TCGA-D7-6521 TCGA-D7-6522 TCGA-D7-6524 
        9.80        15.65         9.63         8.19         6.90         0.69 
TCGA-D7-6525 TCGA-D7-6526 TCGA-D7-6527 TCGA-D7-6815 TCGA-D7-6817 TCGA-D7-6818 
        5.95         6.61         4.14         3.65         4.70         4.04 
TCGA-D7-6820 TCGA-D7-6822 TCGA-EQ-5647 TCGA-F1-6177 TCGA-F1-6874 
        2.93         4.27         0.62         6.54         2.01 

  CDH20 MUTATED CDH20 WILD-TYPE 
           0.26            0.07 
  CDH20 MUTATED CDH20 WILD-TYPE 
          65.10           70.06 
  CDH20 MUTATED CDH20 WILD-TYPE 
           3.65            4.01 
[1] "0.3 - 65.1 (3.6)" "0.1 - 70.1 (4.0)"
     TCGA-B7-5816      TCGA-B7-5818      TCGA-BR-6452      TCGA-BR-6455 
  "CDH20 MUTATED" "CDH20 WILD-TYPE"   "CDH20 MUTATED" "CDH20 WILD-TYPE" 
     TCGA-BR-6457      TCGA-BR-6458      TCGA-BR-6564      TCGA-BR-6565 
"CDH20 WILD-TYPE" "CDH20 WILD-TYPE" "CDH20 WILD-TYPE" "CDH20 WILD-TYPE" 
     TCGA-BR-6566      TCGA-BR-6705      TCGA-BR-6706      TCGA-BR-6707 
"CDH20 WILD-TYPE" "CDH20 WILD-TYPE" "CDH20 WILD-TYPE" "CDH20 WILD-TYPE" 
     TCGA-BR-6709      TCGA-BR-6710      TCGA-BR-6801      TCGA-BR-6802 
"CDH20 WILD-TYPE" "CDH20 WILD-TYPE" "CDH20 WILD-TYPE" "CDH20 WILD-TYPE" 
     TCGA-BR-6803      TCGA-BR-6852      TCGA-CD-5798      TCGA-CD-5799 
"CDH20 WILD-TYPE"   "CDH20 MUTATED" "CDH20 WILD-TYPE" "CDH20 WILD-TYPE" 
     TCGA-CD-5800      TCGA-CD-5801      TCGA-CD-5802      TCGA-CD-5803 
"CDH20 WILD-TYPE" "CDH20 WILD-TYPE" "CDH20 WILD-TYPE" "CDH20 WILD-TYPE" 
     TCGA-CD-5813      TCGA-CG-4300      TCGA-CG-4301      TCGA-CG-4304 
"CDH20 WILD-TYPE" "CDH20 WILD-TYPE" "CDH20 WILD-TYPE" "CDH20 WILD-TYPE" 
     TCGA-CG-4305      TCGA-CG-4306      TCGA-CG-4436      TCGA-CG-4437 
  "CDH20 MUTATED"   "CDH20 MUTATED" "CDH20 WILD-TYPE" "CDH20 WILD-TYPE" 
     TCGA-CG-4438      TCGA-CG-4440      TCGA-CG-4441      TCGA-CG-4443 
"CDH20 WILD-TYPE" "CDH20 WILD-TYPE" "CDH20 WILD-TYPE" "CDH20 WILD-TYPE" 
     TCGA-CG-4444      TCGA-CG-4449      TCGA-CG-4455      TCGA-CG-4460 
"CDH20 WILD-TYPE" "CDH20 WILD-TYPE" "CDH20 WILD-TYPE" "CDH20 WILD-TYPE" 
     TCGA-CG-4462      TCGA-CG-4465      TCGA-CG-4466      TCGA-CG-4469 
"CDH20 WILD-TYPE" "CDH20 WILD-TYPE" "CDH20 WILD-TYPE"   "CDH20 MUTATED" 
     TCGA-CG-4472      TCGA-CG-4474      TCGA-CG-4477      TCGA-CG-5716 
"CDH20 WILD-TYPE" "CDH20 WILD-TYPE" "CDH20 WILD-TYPE" "CDH20 WILD-TYPE" 
     TCGA-CG-5717      TCGA-CG-5718      TCGA-CG-5719      TCGA-CG-5720 
"CDH20 WILD-TYPE" "CDH20 WILD-TYPE" "CDH20 WILD-TYPE" "CDH20 WILD-TYPE" 
     TCGA-CG-5721      TCGA-CG-5722      TCGA-CG-5723      TCGA-CG-5724 
"CDH20 WILD-TYPE" "CDH20 WILD-TYPE" "CDH20 WILD-TYPE" "CDH20 WILD-TYPE" 
     TCGA-CG-5725      TCGA-CG-5726      TCGA-CG-5727      TCGA-CG-5728 
"CDH20 WILD-TYPE" "CDH20 WILD-TYPE" "CDH20 WILD-TYPE"   "CDH20 MUTATED" 
     TCGA-CG-5730      TCGA-CG-5732      TCGA-CG-5733      TCGA-CG-5734 
"CDH20 WILD-TYPE" "CDH20 WILD-TYPE" "CDH20 WILD-TYPE" "CDH20 WILD-TYPE" 
     TCGA-D7-5577      TCGA-D7-5578      TCGA-D7-5579      TCGA-D7-6518 
"CDH20 WILD-TYPE" "CDH20 WILD-TYPE" "CDH20 WILD-TYPE" "CDH20 WILD-TYPE" 
     TCGA-D7-6519      TCGA-D7-6520      TCGA-D7-6521      TCGA-D7-6522 
"CDH20 WILD-TYPE" "CDH20 WILD-TYPE" "CDH20 WILD-TYPE" "CDH20 WILD-TYPE" 
     TCGA-D7-6524      TCGA-D7-6525      TCGA-D7-6526      TCGA-D7-6527 
"CDH20 WILD-TYPE" "CDH20 WILD-TYPE" "CDH20 WILD-TYPE" "CDH20 WILD-TYPE" 
     TCGA-D7-6528      TCGA-D7-6815      TCGA-D7-6817      TCGA-D7-6818 
  "CDH20 MUTATED" "CDH20 WILD-TYPE" "CDH20 WILD-TYPE" "CDH20 WILD-TYPE" 
     TCGA-D7-6820      TCGA-D7-6822      TCGA-EQ-5647      TCGA-F1-6177 
"CDH20 WILD-TYPE" "CDH20 WILD-TYPE" "CDH20 WILD-TYPE" "CDH20 WILD-TYPE" 
     TCGA-F1-6874 
"CDH20 WILD-TYPE" 
     TCGA-B7-5816      TCGA-B7-5818      TCGA-BR-6452      TCGA-BR-6455 
  "CDH20 MUTATED" "CDH20 WILD-TYPE"   "CDH20 MUTATED" "CDH20 WILD-TYPE" 
     TCGA-BR-6457      TCGA-BR-6458      TCGA-BR-6564      TCGA-BR-6565 
"CDH20 WILD-TYPE" "CDH20 WILD-TYPE" "CDH20 WILD-TYPE" "CDH20 WILD-TYPE" 
     TCGA-BR-6566      TCGA-BR-6705      TCGA-BR-6706      TCGA-BR-6707 
"CDH20 WILD-TYPE" "CDH20 WILD-TYPE" "CDH20 WILD-TYPE" "CDH20 WILD-TYPE" 
     TCGA-BR-6709      TCGA-BR-6710      TCGA-BR-6801      TCGA-BR-6802 
"CDH20 WILD-TYPE" "CDH20 WILD-TYPE" "CDH20 WILD-TYPE" "CDH20 WILD-TYPE" 
     TCGA-BR-6803      TCGA-BR-6852      TCGA-CD-5798      TCGA-CD-5799 
"CDH20 WILD-TYPE"   "CDH20 MUTATED" "CDH20 WILD-TYPE" "CDH20 WILD-TYPE" 
     TCGA-CD-5800      TCGA-CD-5801      TCGA-CD-5802      TCGA-CD-5803 
"CDH20 WILD-TYPE" "CDH20 WILD-TYPE" "CDH20 WILD-TYPE" "CDH20 WILD-TYPE" 
     TCGA-CD-5813      TCGA-CG-4300      TCGA-CG-4301      TCGA-CG-4304 
"CDH20 WILD-TYPE" "CDH20 WILD-TYPE" "CDH20 WILD-TYPE" "CDH20 WILD-TYPE" 
     TCGA-CG-4305      TCGA-CG-4306      TCGA-CG-4436      TCGA-CG-4437 
  "CDH20 MUTATED"   "CDH20 MUTATED" "CDH20 WILD-TYPE" "CDH20 WILD-TYPE" 
     TCGA-CG-4438      TCGA-CG-4440      TCGA-CG-4441      TCGA-CG-4443 
"CDH20 WILD-TYPE" "CDH20 WILD-TYPE" "CDH20 WILD-TYPE" "CDH20 WILD-TYPE" 
     TCGA-CG-4444      TCGA-CG-4449      TCGA-CG-4455      TCGA-CG-4460 
"CDH20 WILD-TYPE" "CDH20 WILD-TYPE" "CDH20 WILD-TYPE" "CDH20 WILD-TYPE" 
     TCGA-CG-4462      TCGA-CG-4465      TCGA-CG-4466      TCGA-CG-4469 
"CDH20 WILD-TYPE" "CDH20 WILD-TYPE" "CDH20 WILD-TYPE"   "CDH20 MUTATED" 
     TCGA-CG-4472      TCGA-CG-4474      TCGA-CG-4477      TCGA-CG-5716 
"CDH20 WILD-TYPE" "CDH20 WILD-TYPE" "CDH20 WILD-TYPE" "CDH20 WILD-TYPE" 
     TCGA-CG-5717      TCGA-CG-5718      TCGA-CG-5719      TCGA-CG-5720 
"CDH20 WILD-TYPE" "CDH20 WILD-TYPE" "CDH20 WILD-TYPE" "CDH20 WILD-TYPE" 
     TCGA-CG-5721      TCGA-CG-5722      TCGA-CG-5723      TCGA-CG-5724 
"CDH20 WILD-TYPE" "CDH20 WILD-TYPE" "CDH20 WILD-TYPE" "CDH20 WILD-TYPE" 
     TCGA-CG-5725      TCGA-CG-5726      TCGA-CG-5727      TCGA-CG-5728 
"CDH20 WILD-TYPE" "CDH20 WILD-TYPE" "CDH20 WILD-TYPE"   "CDH20 MUTATED" 
     TCGA-CG-5730      TCGA-CG-5732      TCGA-CG-5733      TCGA-CG-5734 
"CDH20 WILD-TYPE" "CDH20 WILD-TYPE" "CDH20 WILD-TYPE" "CDH20 WILD-TYPE" 
     TCGA-D7-5577      TCGA-D7-5578      TCGA-D7-5579      TCGA-D7-6518 
"CDH20 WILD-TYPE" "CDH20 WILD-TYPE" "CDH20 WILD-TYPE" "CDH20 WILD-TYPE" 
     TCGA-D7-6519      TCGA-D7-6520      TCGA-D7-6521      TCGA-D7-6522 
"CDH20 WILD-TYPE" "CDH20 WILD-TYPE" "CDH20 WILD-TYPE" "CDH20 WILD-TYPE" 
     TCGA-D7-6524      TCGA-D7-6525      TCGA-D7-6526      TCGA-D7-6527 
"CDH20 WILD-TYPE" "CDH20 WILD-TYPE" "CDH20 WILD-TYPE" "CDH20 WILD-TYPE" 
     TCGA-D7-6528      TCGA-D7-6815      TCGA-D7-6817      TCGA-D7-6818 
  "CDH20 MUTATED" "CDH20 WILD-TYPE" "CDH20 WILD-TYPE" "CDH20 WILD-TYPE" 
     TCGA-D7-6820      TCGA-D7-6822      TCGA-EQ-5647      TCGA-F1-6177 
"CDH20 WILD-TYPE" "CDH20 WILD-TYPE" "CDH20 WILD-TYPE" "CDH20 WILD-TYPE" 
     TCGA-F1-6874 
"CDH20 WILD-TYPE" 
     TCGA-B7-5816      TCGA-B7-5818      TCGA-BR-6452      TCGA-BR-6455 
  "CDH20 MUTATED" "CDH20 WILD-TYPE"   "CDH20 MUTATED" "CDH20 WILD-TYPE" 
     TCGA-BR-6457      TCGA-BR-6458      TCGA-BR-6564      TCGA-BR-6565 
"CDH20 WILD-TYPE" "CDH20 WILD-TYPE" "CDH20 WILD-TYPE" "CDH20 WILD-TYPE" 
     TCGA-BR-6566      TCGA-BR-6705      TCGA-BR-6706      TCGA-BR-6707 
"CDH20 WILD-TYPE" "CDH20 WILD-TYPE" "CDH20 WILD-TYPE" "CDH20 WILD-TYPE" 
     TCGA-BR-6709      TCGA-BR-6710      TCGA-BR-6801      TCGA-BR-6802 
"CDH20 WILD-TYPE" "CDH20 WILD-TYPE" "CDH20 WILD-TYPE" "CDH20 WILD-TYPE" 
     TCGA-BR-6803      TCGA-BR-6852      TCGA-CD-5798      TCGA-CD-5799 
"CDH20 WILD-TYPE"   "CDH20 MUTATED" "CDH20 WILD-TYPE" "CDH20 WILD-TYPE" 
     TCGA-CD-5800      TCGA-CD-5801      TCGA-CD-5802      TCGA-CD-5803 
"CDH20 WILD-TYPE" "CDH20 WILD-TYPE" "CDH20 WILD-TYPE" "CDH20 WILD-TYPE" 
     TCGA-CD-5813      TCGA-CG-4300      TCGA-CG-4301      TCGA-CG-4304 
"CDH20 WILD-TYPE" "CDH20 WILD-TYPE" "CDH20 WILD-TYPE" "CDH20 WILD-TYPE" 
     TCGA-CG-4305      TCGA-CG-4306      TCGA-CG-4436      TCGA-CG-4437 
  "CDH20 MUTATED"   "CDH20 MUTATED" "CDH20 WILD-TYPE" "CDH20 WILD-TYPE" 
     TCGA-CG-4438      TCGA-CG-4440      TCGA-CG-4441      TCGA-CG-4443 
"CDH20 WILD-TYPE" "CDH20 WILD-TYPE" "CDH20 WILD-TYPE" "CDH20 WILD-TYPE" 
     TCGA-CG-4444      TCGA-CG-4449      TCGA-CG-4455      TCGA-CG-4460 
"CDH20 WILD-TYPE" "CDH20 WILD-TYPE" "CDH20 WILD-TYPE" "CDH20 WILD-TYPE" 
     TCGA-CG-4462      TCGA-CG-4465      TCGA-CG-4466      TCGA-CG-4469 
"CDH20 WILD-TYPE" "CDH20 WILD-TYPE" "CDH20 WILD-TYPE"   "CDH20 MUTATED" 
     TCGA-CG-4472      TCGA-CG-4474      TCGA-CG-4477      TCGA-CG-5716 
"CDH20 WILD-TYPE" "CDH20 WILD-TYPE" "CDH20 WILD-TYPE" "CDH20 WILD-TYPE" 
     TCGA-CG-5717      TCGA-CG-5718      TCGA-CG-5719      TCGA-CG-5720 
"CDH20 WILD-TYPE" "CDH20 WILD-TYPE" "CDH20 WILD-TYPE" "CDH20 WILD-TYPE" 
     TCGA-CG-5721      TCGA-CG-5722      TCGA-CG-5723      TCGA-CG-5724 
"CDH20 WILD-TYPE" "CDH20 WILD-TYPE" "CDH20 WILD-TYPE" "CDH20 WILD-TYPE" 
     TCGA-CG-5725      TCGA-CG-5726      TCGA-CG-5727      TCGA-CG-5728 
"CDH20 WILD-TYPE" "CDH20 WILD-TYPE" "CDH20 WILD-TYPE"   "CDH20 MUTATED" 
     TCGA-CG-5730      TCGA-CG-5732      TCGA-CG-5733      TCGA-CG-5734 
"CDH20 WILD-TYPE" "CDH20 WILD-TYPE" "CDH20 WILD-TYPE" "CDH20 WILD-TYPE" 
     TCGA-D7-5577      TCGA-D7-5578      TCGA-D7-5579      TCGA-D7-6518 
"CDH20 WILD-TYPE" "CDH20 WILD-TYPE" "CDH20 WILD-TYPE" "CDH20 WILD-TYPE" 
     TCGA-D7-6519      TCGA-D7-6520      TCGA-D7-6521      TCGA-D7-6522 
"CDH20 WILD-TYPE" "CDH20 WILD-TYPE" "CDH20 WILD-TYPE" "CDH20 WILD-TYPE" 
     TCGA-D7-6524      TCGA-D7-6525      TCGA-D7-6526      TCGA-D7-6527 
"CDH20 WILD-TYPE" "CDH20 WILD-TYPE" "CDH20 WILD-TYPE" "CDH20 WILD-TYPE" 
     TCGA-D7-6528      TCGA-D7-6815      TCGA-D7-6817      TCGA-D7-6818 
  "CDH20 MUTATED" "CDH20 WILD-TYPE" "CDH20 WILD-TYPE" "CDH20 WILD-TYPE" 
     TCGA-D7-6820      TCGA-D7-6822      TCGA-EQ-5647      TCGA-F1-6177 
"CDH20 WILD-TYPE" "CDH20 WILD-TYPE" "CDH20 WILD-TYPE" "CDH20 WILD-TYPE" 
     TCGA-F1-6874 
"CDH20 WILD-TYPE" 
[1] "hr=" "1.6"
D30V2, continuous
D30V3, binary
[1] "tbl2"
                 cls
clus              [,1] [,2]
  CDH20 MUTATED     10    4
  CDH20 WILD-TYPE   36   66
        clus
vv       CDH20 MUTATED CDH20 WILD-TYPE
  FEMALE            10              36
  MALE               4              66
D30V4, multiclass
D30V5, multiclass
    clus
vv   CDH20 MUTATED CDH20 WILD-TYPE
  T1             1               3
  T2             4              42
  T3             7              34
  T4             1              14
D30V6, multiclass
    clus
vv   CDH20 MUTATED CDH20 WILD-TYPE
  N0             5              30
  N1             5              34
  N2             1              18
  N3             1              11
D30V7, multiclass
    clus
vv   CDH20 MUTATED CDH20 WILD-TYPE
  M0            12              87
  M1             1              12
  MX             1               3
D30V8, multiclass
     clus
vv    CDH20 MUTATED CDH20 WILD-TYPE
  I               2              16
  II              3              29
  III             5              24
  IV              2              19

Clustering(31) Variable = OR2T6 MUTATION ANALYSIS
D31V1, survival
                 sevent
clus2              0  1
  OR2T6 MUTATED    5  1
  OR2T6 WILD-TYPE 66 13
  OR2T6 MUTATED OR2T6 WILD-TYPE 
              6              79 
  OR2T6 MUTATED OR2T6 WILD-TYPE 
              1              13 
$`OR2T6 MUTATED`
TCGA-BR-6452 TCGA-BR-6458 TCGA-BR-6707 TCGA-CG-4438 TCGA-CG-4465 TCGA-D7-5579 
        0.95         1.35         0.99        54.05         8.98         4.54 

$`OR2T6 WILD-TYPE`
TCGA-B7-5816 TCGA-B7-5818 TCGA-BR-6455 TCGA-BR-6457 TCGA-BR-6564 TCGA-BR-6565 
        5.62         0.10         1.41         1.35         0.82         0.62 
TCGA-BR-6566 TCGA-BR-6705 TCGA-BR-6706 TCGA-BR-6709 TCGA-BR-6710 TCGA-BR-6801 
        0.62         1.71         2.17         1.22         0.66         1.12 
TCGA-BR-6802 TCGA-BR-6803 TCGA-BR-6852 TCGA-CD-5798 TCGA-CD-5799 TCGA-CD-5800 
        0.76         0.66         0.26         0.82         0.69         0.36 
TCGA-CD-5801 TCGA-CD-5802 TCGA-CD-5803 TCGA-CD-5813 TCGA-CG-4300 TCGA-CG-4301 
        0.49         0.30         0.07         0.39        20.02         3.02 
TCGA-CG-4304 TCGA-CG-4305 TCGA-CG-4306 TCGA-CG-4436 TCGA-CG-4437 TCGA-CG-4440 
       27.02        15.95         1.02        52.96         8.05         4.01 
TCGA-CG-4441 TCGA-CG-4443 TCGA-CG-4444 TCGA-CG-4449 TCGA-CG-4455 TCGA-CG-4460 
       14.01        29.98        47.05        19.07        12.03        21.99 
TCGA-CG-4462 TCGA-CG-4466 TCGA-CG-4469 TCGA-CG-4472 TCGA-CG-4474 TCGA-CG-4477 
        1.02        18.94         7.07        12.00         1.02         1.02 
TCGA-CG-5716 TCGA-CG-5717 TCGA-CG-5718 TCGA-CG-5719 TCGA-CG-5720 TCGA-CG-5721 
        1.02         6.94         1.02         1.02         0.99         5.98 
TCGA-CG-5722 TCGA-CG-5723 TCGA-CG-5724 TCGA-CG-5725 TCGA-CG-5726 TCGA-CG-5727 
        0.95        70.06        12.03        15.02        28.96        31.04 
TCGA-CG-5728 TCGA-CG-5730 TCGA-CG-5732 TCGA-CG-5733 TCGA-CG-5734 TCGA-D7-5577 
       65.10         4.01        55.04        21.07         7.99         8.65 
TCGA-D7-5578 TCGA-D7-6518 TCGA-D7-6519 TCGA-D7-6520 TCGA-D7-6521 TCGA-D7-6522 
        3.58         9.80        15.65         9.63         8.19         6.90 
TCGA-D7-6524 TCGA-D7-6525 TCGA-D7-6526 TCGA-D7-6527 TCGA-D7-6528 TCGA-D7-6815 
        0.69         5.95         6.61         4.14         1.68         3.65 
TCGA-D7-6817 TCGA-D7-6818 TCGA-D7-6820 TCGA-D7-6822 TCGA-EQ-5647 TCGA-F1-6177 
        4.70         4.04         2.93         4.27         0.62         6.54 
TCGA-F1-6874 
        2.01 

  OR2T6 MUTATED OR2T6 WILD-TYPE 
           0.95            0.07 
  OR2T6 MUTATED OR2T6 WILD-TYPE 
          54.05           70.06 
  OR2T6 MUTATED OR2T6 WILD-TYPE 
          2.945           4.010 
[1] "0.9 - 54.0 (2.9)" "0.1 - 70.1 (4.0)"
     TCGA-B7-5816      TCGA-B7-5818      TCGA-BR-6452      TCGA-BR-6455 
"OR2T6 WILD-TYPE" "OR2T6 WILD-TYPE"   "OR2T6 MUTATED" "OR2T6 WILD-TYPE" 
     TCGA-BR-6457      TCGA-BR-6458      TCGA-BR-6564      TCGA-BR-6565 
"OR2T6 WILD-TYPE"   "OR2T6 MUTATED" "OR2T6 WILD-TYPE" "OR2T6 WILD-TYPE" 
     TCGA-BR-6566      TCGA-BR-6705      TCGA-BR-6706      TCGA-BR-6707 
"OR2T6 WILD-TYPE" "OR2T6 WILD-TYPE" "OR2T6 WILD-TYPE"   "OR2T6 MUTATED" 
     TCGA-BR-6709      TCGA-BR-6710      TCGA-BR-6801      TCGA-BR-6802 
"OR2T6 WILD-TYPE" "OR2T6 WILD-TYPE" "OR2T6 WILD-TYPE" "OR2T6 WILD-TYPE" 
     TCGA-BR-6803      TCGA-BR-6852      TCGA-CD-5798      TCGA-CD-5799 
"OR2T6 WILD-TYPE" "OR2T6 WILD-TYPE" "OR2T6 WILD-TYPE" "OR2T6 WILD-TYPE" 
     TCGA-CD-5800      TCGA-CD-5801      TCGA-CD-5802      TCGA-CD-5803 
"OR2T6 WILD-TYPE" "OR2T6 WILD-TYPE" "OR2T6 WILD-TYPE" "OR2T6 WILD-TYPE" 
     TCGA-CD-5813      TCGA-CG-4300      TCGA-CG-4301      TCGA-CG-4304 
"OR2T6 WILD-TYPE" "OR2T6 WILD-TYPE" "OR2T6 WILD-TYPE" "OR2T6 WILD-TYPE" 
     TCGA-CG-4305      TCGA-CG-4306      TCGA-CG-4436      TCGA-CG-4437 
"OR2T6 WILD-TYPE" "OR2T6 WILD-TYPE" "OR2T6 WILD-TYPE" "OR2T6 WILD-TYPE" 
     TCGA-CG-4438      TCGA-CG-4440      TCGA-CG-4441      TCGA-CG-4443 
  "OR2T6 MUTATED" "OR2T6 WILD-TYPE" "OR2T6 WILD-TYPE" "OR2T6 WILD-TYPE" 
     TCGA-CG-4444      TCGA-CG-4449      TCGA-CG-4455      TCGA-CG-4460 
"OR2T6 WILD-TYPE" "OR2T6 WILD-TYPE" "OR2T6 WILD-TYPE" "OR2T6 WILD-TYPE" 
     TCGA-CG-4462      TCGA-CG-4465      TCGA-CG-4466      TCGA-CG-4469 
"OR2T6 WILD-TYPE"   "OR2T6 MUTATED" "OR2T6 WILD-TYPE" "OR2T6 WILD-TYPE" 
     TCGA-CG-4472      TCGA-CG-4474      TCGA-CG-4477      TCGA-CG-5716 
"OR2T6 WILD-TYPE" "OR2T6 WILD-TYPE" "OR2T6 WILD-TYPE" "OR2T6 WILD-TYPE" 
     TCGA-CG-5717      TCGA-CG-5718      TCGA-CG-5719      TCGA-CG-5720 
"OR2T6 WILD-TYPE" "OR2T6 WILD-TYPE" "OR2T6 WILD-TYPE" "OR2T6 WILD-TYPE" 
     TCGA-CG-5721      TCGA-CG-5722      TCGA-CG-5723      TCGA-CG-5724 
"OR2T6 WILD-TYPE" "OR2T6 WILD-TYPE" "OR2T6 WILD-TYPE" "OR2T6 WILD-TYPE" 
     TCGA-CG-5725      TCGA-CG-5726      TCGA-CG-5727      TCGA-CG-5728 
"OR2T6 WILD-TYPE" "OR2T6 WILD-TYPE" "OR2T6 WILD-TYPE" "OR2T6 WILD-TYPE" 
     TCGA-CG-5730      TCGA-CG-5732      TCGA-CG-5733      TCGA-CG-5734 
"OR2T6 WILD-TYPE" "OR2T6 WILD-TYPE" "OR2T6 WILD-TYPE" "OR2T6 WILD-TYPE" 
     TCGA-D7-5577      TCGA-D7-5578      TCGA-D7-5579      TCGA-D7-6518 
"OR2T6 WILD-TYPE" "OR2T6 WILD-TYPE"   "OR2T6 MUTATED" "OR2T6 WILD-TYPE" 
     TCGA-D7-6519      TCGA-D7-6520      TCGA-D7-6521      TCGA-D7-6522 
"OR2T6 WILD-TYPE" "OR2T6 WILD-TYPE" "OR2T6 WILD-TYPE" "OR2T6 WILD-TYPE" 
     TCGA-D7-6524      TCGA-D7-6525      TCGA-D7-6526      TCGA-D7-6527 
"OR2T6 WILD-TYPE" "OR2T6 WILD-TYPE" "OR2T6 WILD-TYPE" "OR2T6 WILD-TYPE" 
     TCGA-D7-6528      TCGA-D7-6815      TCGA-D7-6817      TCGA-D7-6818 
"OR2T6 WILD-TYPE" "OR2T6 WILD-TYPE" "OR2T6 WILD-TYPE" "OR2T6 WILD-TYPE" 
     TCGA-D7-6820      TCGA-D7-6822      TCGA-EQ-5647      TCGA-F1-6177 
"OR2T6 WILD-TYPE" "OR2T6 WILD-TYPE" "OR2T6 WILD-TYPE" "OR2T6 WILD-TYPE" 
     TCGA-F1-6874 
"OR2T6 WILD-TYPE" 
     TCGA-B7-5816      TCGA-B7-5818      TCGA-BR-6452      TCGA-BR-6455 
"OR2T6 WILD-TYPE" "OR2T6 WILD-TYPE"   "OR2T6 MUTATED" "OR2T6 WILD-TYPE" 
     TCGA-BR-6457      TCGA-BR-6458      TCGA-BR-6564      TCGA-BR-6565 
"OR2T6 WILD-TYPE"   "OR2T6 MUTATED" "OR2T6 WILD-TYPE" "OR2T6 WILD-TYPE" 
     TCGA-BR-6566      TCGA-BR-6705      TCGA-BR-6706      TCGA-BR-6707 
"OR2T6 WILD-TYPE" "OR2T6 WILD-TYPE" "OR2T6 WILD-TYPE"   "OR2T6 MUTATED" 
     TCGA-BR-6709      TCGA-BR-6710      TCGA-BR-6801      TCGA-BR-6802 
"OR2T6 WILD-TYPE" "OR2T6 WILD-TYPE" "OR2T6 WILD-TYPE" "OR2T6 WILD-TYPE" 
     TCGA-BR-6803      TCGA-BR-6852      TCGA-CD-5798      TCGA-CD-5799 
"OR2T6 WILD-TYPE" "OR2T6 WILD-TYPE" "OR2T6 WILD-TYPE" "OR2T6 WILD-TYPE" 
     TCGA-CD-5800      TCGA-CD-5801      TCGA-CD-5802      TCGA-CD-5803 
"OR2T6 WILD-TYPE" "OR2T6 WILD-TYPE" "OR2T6 WILD-TYPE" "OR2T6 WILD-TYPE" 
     TCGA-CD-5813      TCGA-CG-4300      TCGA-CG-4301      TCGA-CG-4304 
"OR2T6 WILD-TYPE" "OR2T6 WILD-TYPE" "OR2T6 WILD-TYPE" "OR2T6 WILD-TYPE" 
     TCGA-CG-4305      TCGA-CG-4306      TCGA-CG-4436      TCGA-CG-4437 
"OR2T6 WILD-TYPE" "OR2T6 WILD-TYPE" "OR2T6 WILD-TYPE" "OR2T6 WILD-TYPE" 
     TCGA-CG-4438      TCGA-CG-4440      TCGA-CG-4441      TCGA-CG-4443 
  "OR2T6 MUTATED" "OR2T6 WILD-TYPE" "OR2T6 WILD-TYPE" "OR2T6 WILD-TYPE" 
     TCGA-CG-4444      TCGA-CG-4449      TCGA-CG-4455      TCGA-CG-4460 
"OR2T6 WILD-TYPE" "OR2T6 WILD-TYPE" "OR2T6 WILD-TYPE" "OR2T6 WILD-TYPE" 
     TCGA-CG-4462      TCGA-CG-4465      TCGA-CG-4466      TCGA-CG-4469 
"OR2T6 WILD-TYPE"   "OR2T6 MUTATED" "OR2T6 WILD-TYPE" "OR2T6 WILD-TYPE" 
     TCGA-CG-4472      TCGA-CG-4474      TCGA-CG-4477      TCGA-CG-5716 
"OR2T6 WILD-TYPE" "OR2T6 WILD-TYPE" "OR2T6 WILD-TYPE" "OR2T6 WILD-TYPE" 
     TCGA-CG-5717      TCGA-CG-5718      TCGA-CG-5719      TCGA-CG-5720 
"OR2T6 WILD-TYPE" "OR2T6 WILD-TYPE" "OR2T6 WILD-TYPE" "OR2T6 WILD-TYPE" 
     TCGA-CG-5721      TCGA-CG-5722      TCGA-CG-5723      TCGA-CG-5724 
"OR2T6 WILD-TYPE" "OR2T6 WILD-TYPE" "OR2T6 WILD-TYPE" "OR2T6 WILD-TYPE" 
     TCGA-CG-5725      TCGA-CG-5726      TCGA-CG-5727      TCGA-CG-5728 
"OR2T6 WILD-TYPE" "OR2T6 WILD-TYPE" "OR2T6 WILD-TYPE" "OR2T6 WILD-TYPE" 
     TCGA-CG-5730      TCGA-CG-5732      TCGA-CG-5733      TCGA-CG-5734 
"OR2T6 WILD-TYPE" "OR2T6 WILD-TYPE" "OR2T6 WILD-TYPE" "OR2T6 WILD-TYPE" 
     TCGA-D7-5577      TCGA-D7-5578      TCGA-D7-5579      TCGA-D7-6518 
"OR2T6 WILD-TYPE" "OR2T6 WILD-TYPE"   "OR2T6 MUTATED" "OR2T6 WILD-TYPE" 
     TCGA-D7-6519      TCGA-D7-6520      TCGA-D7-6521      TCGA-D7-6522 
"OR2T6 WILD-TYPE" "OR2T6 WILD-TYPE" "OR2T6 WILD-TYPE" "OR2T6 WILD-TYPE" 
     TCGA-D7-6524      TCGA-D7-6525      TCGA-D7-6526      TCGA-D7-6527 
"OR2T6 WILD-TYPE" "OR2T6 WILD-TYPE" "OR2T6 WILD-TYPE" "OR2T6 WILD-TYPE" 
     TCGA-D7-6528      TCGA-D7-6815      TCGA-D7-6817      TCGA-D7-6818 
"OR2T6 WILD-TYPE" "OR2T6 WILD-TYPE" "OR2T6 WILD-TYPE" "OR2T6 WILD-TYPE" 
     TCGA-D7-6820      TCGA-D7-6822      TCGA-EQ-5647      TCGA-F1-6177 
"OR2T6 WILD-TYPE" "OR2T6 WILD-TYPE" "OR2T6 WILD-TYPE" "OR2T6 WILD-TYPE" 
     TCGA-F1-6874 
"OR2T6 WILD-TYPE" 
     TCGA-B7-5816      TCGA-B7-5818      TCGA-BR-6452      TCGA-BR-6455 
"OR2T6 WILD-TYPE" "OR2T6 WILD-TYPE"   "OR2T6 MUTATED" "OR2T6 WILD-TYPE" 
     TCGA-BR-6457      TCGA-BR-6458      TCGA-BR-6564      TCGA-BR-6565 
"OR2T6 WILD-TYPE"   "OR2T6 MUTATED" "OR2T6 WILD-TYPE" "OR2T6 WILD-TYPE" 
     TCGA-BR-6566      TCGA-BR-6705      TCGA-BR-6706      TCGA-BR-6707 
"OR2T6 WILD-TYPE" "OR2T6 WILD-TYPE" "OR2T6 WILD-TYPE"   "OR2T6 MUTATED" 
     TCGA-BR-6709      TCGA-BR-6710      TCGA-BR-6801      TCGA-BR-6802 
"OR2T6 WILD-TYPE" "OR2T6 WILD-TYPE" "OR2T6 WILD-TYPE" "OR2T6 WILD-TYPE" 
     TCGA-BR-6803      TCGA-BR-6852      TCGA-CD-5798      TCGA-CD-5799 
"OR2T6 WILD-TYPE" "OR2T6 WILD-TYPE" "OR2T6 WILD-TYPE" "OR2T6 WILD-TYPE" 
     TCGA-CD-5800      TCGA-CD-5801      TCGA-CD-5802      TCGA-CD-5803 
"OR2T6 WILD-TYPE" "OR2T6 WILD-TYPE" "OR2T6 WILD-TYPE" "OR2T6 WILD-TYPE" 
     TCGA-CD-5813      TCGA-CG-4300      TCGA-CG-4301      TCGA-CG-4304 
"OR2T6 WILD-TYPE" "OR2T6 WILD-TYPE" "OR2T6 WILD-TYPE" "OR2T6 WILD-TYPE" 
     TCGA-CG-4305      TCGA-CG-4306      TCGA-CG-4436      TCGA-CG-4437 
"OR2T6 WILD-TYPE" "OR2T6 WILD-TYPE" "OR2T6 WILD-TYPE" "OR2T6 WILD-TYPE" 
     TCGA-CG-4438      TCGA-CG-4440      TCGA-CG-4441      TCGA-CG-4443 
  "OR2T6 MUTATED" "OR2T6 WILD-TYPE" "OR2T6 WILD-TYPE" "OR2T6 WILD-TYPE" 
     TCGA-CG-4444      TCGA-CG-4449      TCGA-CG-4455      TCGA-CG-4460 
"OR2T6 WILD-TYPE" "OR2T6 WILD-TYPE" "OR2T6 WILD-TYPE" "OR2T6 WILD-TYPE" 
     TCGA-CG-4462      TCGA-CG-4465      TCGA-CG-4466      TCGA-CG-4469 
"OR2T6 WILD-TYPE"   "OR2T6 MUTATED" "OR2T6 WILD-TYPE" "OR2T6 WILD-TYPE" 
     TCGA-CG-4472      TCGA-CG-4474      TCGA-CG-4477      TCGA-CG-5716 
"OR2T6 WILD-TYPE" "OR2T6 WILD-TYPE" "OR2T6 WILD-TYPE" "OR2T6 WILD-TYPE" 
     TCGA-CG-5717      TCGA-CG-5718      TCGA-CG-5719      TCGA-CG-5720 
"OR2T6 WILD-TYPE" "OR2T6 WILD-TYPE" "OR2T6 WILD-TYPE" "OR2T6 WILD-TYPE" 
     TCGA-CG-5721      TCGA-CG-5722      TCGA-CG-5723      TCGA-CG-5724 
"OR2T6 WILD-TYPE" "OR2T6 WILD-TYPE" "OR2T6 WILD-TYPE" "OR2T6 WILD-TYPE" 
     TCGA-CG-5725      TCGA-CG-5726      TCGA-CG-5727      TCGA-CG-5728 
"OR2T6 WILD-TYPE" "OR2T6 WILD-TYPE" "OR2T6 WILD-TYPE" "OR2T6 WILD-TYPE" 
     TCGA-CG-5730      TCGA-CG-5732      TCGA-CG-5733      TCGA-CG-5734 
"OR2T6 WILD-TYPE" "OR2T6 WILD-TYPE" "OR2T6 WILD-TYPE" "OR2T6 WILD-TYPE" 
     TCGA-D7-5577      TCGA-D7-5578      TCGA-D7-5579      TCGA-D7-6518 
"OR2T6 WILD-TYPE" "OR2T6 WILD-TYPE"   "OR2T6 MUTATED" "OR2T6 WILD-TYPE" 
     TCGA-D7-6519      TCGA-D7-6520      TCGA-D7-6521      TCGA-D7-6522 
"OR2T6 WILD-TYPE" "OR2T6 WILD-TYPE" "OR2T6 WILD-TYPE" "OR2T6 WILD-TYPE" 
     TCGA-D7-6524      TCGA-D7-6525      TCGA-D7-6526      TCGA-D7-6527 
"OR2T6 WILD-TYPE" "OR2T6 WILD-TYPE" "OR2T6 WILD-TYPE" "OR2T6 WILD-TYPE" 
     TCGA-D7-6528      TCGA-D7-6815      TCGA-D7-6817      TCGA-D7-6818 
"OR2T6 WILD-TYPE" "OR2T6 WILD-TYPE" "OR2T6 WILD-TYPE" "OR2T6 WILD-TYPE" 
     TCGA-D7-6820      TCGA-D7-6822      TCGA-EQ-5647      TCGA-F1-6177 
"OR2T6 WILD-TYPE" "OR2T6 WILD-TYPE" "OR2T6 WILD-TYPE" "OR2T6 WILD-TYPE" 
     TCGA-F1-6874 
"OR2T6 WILD-TYPE" 
[1] "hr=" "1"  
D31V2, continuous
D31V3, binary
[1] "tbl2"
                 cls
clus              [,1] [,2]
  OR2T6 MUTATED      3    3
  OR2T6 WILD-TYPE   43   67
        clus
vv       OR2T6 MUTATED OR2T6 WILD-TYPE
  FEMALE             3              43
  MALE               3              67
D31V4, multiclass
D31V5, multiclass
    clus
vv   OR2T6 MUTATED OR2T6 WILD-TYPE
  T1             0               4
  T2             0              46
  T3             4              37
  T4             2              13
D31V6, multiclass
    clus
vv   OR2T6 MUTATED OR2T6 WILD-TYPE
  N0             2              33
  N1             1              38
  N2             2              17
  N3             1              11
D31V7, multiclass
    clus
vv   OR2T6 MUTATED OR2T6 WILD-TYPE
  M0             5              94
  M1             1              12
  MX             0               4
D31V8, multiclass
     clus
vv    OR2T6 MUTATED OR2T6 WILD-TYPE
  I               0              18
  II              4              28
  III             0              29
  IV              2              19

Clustering(32) Variable = PARK2 MUTATION ANALYSIS
D32V1, survival
                 sevent
clus2              0  1
  PARK2 MUTATED    5  1
  PARK2 WILD-TYPE 66 13
  PARK2 MUTATED PARK2 WILD-TYPE 
              6              79 
  PARK2 MUTATED PARK2 WILD-TYPE 
              1              13 
$`PARK2 MUTATED`
TCGA-BR-6452 TCGA-CG-4305 TCGA-CG-4306 TCGA-CG-4437 TCGA-D7-6527 TCGA-F1-6177 
        0.95        15.95         1.02         8.05         4.14         6.54 

$`PARK2 WILD-TYPE`
TCGA-B7-5816 TCGA-B7-5818 TCGA-BR-6455 TCGA-BR-6457 TCGA-BR-6458 TCGA-BR-6564 
        5.62         0.10         1.41         1.35         1.35         0.82 
TCGA-BR-6565 TCGA-BR-6566 TCGA-BR-6705 TCGA-BR-6706 TCGA-BR-6707 TCGA-BR-6709 
        0.62         0.62         1.71         2.17         0.99         1.22 
TCGA-BR-6710 TCGA-BR-6801 TCGA-BR-6802 TCGA-BR-6803 TCGA-BR-6852 TCGA-CD-5798 
        0.66         1.12         0.76         0.66         0.26         0.82 
TCGA-CD-5799 TCGA-CD-5800 TCGA-CD-5801 TCGA-CD-5802 TCGA-CD-5803 TCGA-CD-5813 
        0.69         0.36         0.49         0.30         0.07         0.39 
TCGA-CG-4300 TCGA-CG-4301 TCGA-CG-4304 TCGA-CG-4436 TCGA-CG-4438 TCGA-CG-4440 
       20.02         3.02        27.02        52.96        54.05         4.01 
TCGA-CG-4441 TCGA-CG-4443 TCGA-CG-4444 TCGA-CG-4449 TCGA-CG-4455 TCGA-CG-4460 
       14.01        29.98        47.05        19.07        12.03        21.99 
TCGA-CG-4462 TCGA-CG-4465 TCGA-CG-4466 TCGA-CG-4469 TCGA-CG-4472 TCGA-CG-4474 
        1.02         8.98        18.94         7.07        12.00         1.02 
TCGA-CG-4477 TCGA-CG-5716 TCGA-CG-5717 TCGA-CG-5718 TCGA-CG-5719 TCGA-CG-5720 
        1.02         1.02         6.94         1.02         1.02         0.99 
TCGA-CG-5721 TCGA-CG-5722 TCGA-CG-5723 TCGA-CG-5724 TCGA-CG-5725 TCGA-CG-5726 
        5.98         0.95        70.06        12.03        15.02        28.96 
TCGA-CG-5727 TCGA-CG-5728 TCGA-CG-5730 TCGA-CG-5732 TCGA-CG-5733 TCGA-CG-5734 
       31.04        65.10         4.01        55.04        21.07         7.99 
TCGA-D7-5577 TCGA-D7-5578 TCGA-D7-5579 TCGA-D7-6518 TCGA-D7-6519 TCGA-D7-6520 
        8.65         3.58         4.54         9.80        15.65         9.63 
TCGA-D7-6521 TCGA-D7-6522 TCGA-D7-6524 TCGA-D7-6525 TCGA-D7-6526 TCGA-D7-6528 
        8.19         6.90         0.69         5.95         6.61         1.68 
TCGA-D7-6815 TCGA-D7-6817 TCGA-D7-6818 TCGA-D7-6820 TCGA-D7-6822 TCGA-EQ-5647 
        3.65         4.70         4.04         2.93         4.27         0.62 
TCGA-F1-6874 
        2.01 

  PARK2 MUTATED PARK2 WILD-TYPE 
           0.95            0.07 
  PARK2 MUTATED PARK2 WILD-TYPE 
          15.95           70.06 
  PARK2 MUTATED PARK2 WILD-TYPE 
           5.34            4.01 
[1] "0.9 - 15.9 (5.3)" "0.1 - 70.1 (4.0)"
     TCGA-B7-5816      TCGA-B7-5818      TCGA-BR-6452      TCGA-BR-6455 
"PARK2 WILD-TYPE" "PARK2 WILD-TYPE"   "PARK2 MUTATED" "PARK2 WILD-TYPE" 
     TCGA-BR-6457      TCGA-BR-6458      TCGA-BR-6564      TCGA-BR-6565 
"PARK2 WILD-TYPE" "PARK2 WILD-TYPE" "PARK2 WILD-TYPE" "PARK2 WILD-TYPE" 
     TCGA-BR-6566      TCGA-BR-6705      TCGA-BR-6706      TCGA-BR-6707 
"PARK2 WILD-TYPE" "PARK2 WILD-TYPE" "PARK2 WILD-TYPE" "PARK2 WILD-TYPE" 
     TCGA-BR-6709      TCGA-BR-6710      TCGA-BR-6801      TCGA-BR-6802 
"PARK2 WILD-TYPE" "PARK2 WILD-TYPE" "PARK2 WILD-TYPE" "PARK2 WILD-TYPE" 
     TCGA-BR-6803      TCGA-BR-6852      TCGA-CD-5798      TCGA-CD-5799 
"PARK2 WILD-TYPE" "PARK2 WILD-TYPE" "PARK2 WILD-TYPE" "PARK2 WILD-TYPE" 
     TCGA-CD-5800      TCGA-CD-5801      TCGA-CD-5802      TCGA-CD-5803 
"PARK2 WILD-TYPE" "PARK2 WILD-TYPE" "PARK2 WILD-TYPE" "PARK2 WILD-TYPE" 
     TCGA-CD-5813      TCGA-CG-4300      TCGA-CG-4301      TCGA-CG-4304 
"PARK2 WILD-TYPE" "PARK2 WILD-TYPE" "PARK2 WILD-TYPE" "PARK2 WILD-TYPE" 
     TCGA-CG-4305      TCGA-CG-4306      TCGA-CG-4436      TCGA-CG-4437 
  "PARK2 MUTATED"   "PARK2 MUTATED" "PARK2 WILD-TYPE"   "PARK2 MUTATED" 
     TCGA-CG-4438      TCGA-CG-4440      TCGA-CG-4441      TCGA-CG-4443 
"PARK2 WILD-TYPE" "PARK2 WILD-TYPE" "PARK2 WILD-TYPE" "PARK2 WILD-TYPE" 
     TCGA-CG-4444      TCGA-CG-4449      TCGA-CG-4455      TCGA-CG-4460 
"PARK2 WILD-TYPE" "PARK2 WILD-TYPE" "PARK2 WILD-TYPE" "PARK2 WILD-TYPE" 
     TCGA-CG-4462      TCGA-CG-4465      TCGA-CG-4466      TCGA-CG-4469 
"PARK2 WILD-TYPE" "PARK2 WILD-TYPE" "PARK2 WILD-TYPE" "PARK2 WILD-TYPE" 
     TCGA-CG-4472      TCGA-CG-4474      TCGA-CG-4477      TCGA-CG-5716 
"PARK2 WILD-TYPE" "PARK2 WILD-TYPE" "PARK2 WILD-TYPE" "PARK2 WILD-TYPE" 
     TCGA-CG-5717      TCGA-CG-5718      TCGA-CG-5719      TCGA-CG-5720 
"PARK2 WILD-TYPE" "PARK2 WILD-TYPE" "PARK2 WILD-TYPE" "PARK2 WILD-TYPE" 
     TCGA-CG-5721      TCGA-CG-5722      TCGA-CG-5723      TCGA-CG-5724 
"PARK2 WILD-TYPE" "PARK2 WILD-TYPE" "PARK2 WILD-TYPE" "PARK2 WILD-TYPE" 
     TCGA-CG-5725      TCGA-CG-5726      TCGA-CG-5727      TCGA-CG-5728 
"PARK2 WILD-TYPE" "PARK2 WILD-TYPE" "PARK2 WILD-TYPE" "PARK2 WILD-TYPE" 
     TCGA-CG-5730      TCGA-CG-5732      TCGA-CG-5733      TCGA-CG-5734 
"PARK2 WILD-TYPE" "PARK2 WILD-TYPE" "PARK2 WILD-TYPE" "PARK2 WILD-TYPE" 
     TCGA-D7-5577      TCGA-D7-5578      TCGA-D7-5579      TCGA-D7-6518 
"PARK2 WILD-TYPE" "PARK2 WILD-TYPE" "PARK2 WILD-TYPE" "PARK2 WILD-TYPE" 
     TCGA-D7-6519      TCGA-D7-6520      TCGA-D7-6521      TCGA-D7-6522 
"PARK2 WILD-TYPE" "PARK2 WILD-TYPE" "PARK2 WILD-TYPE" "PARK2 WILD-TYPE" 
     TCGA-D7-6524      TCGA-D7-6525      TCGA-D7-6526      TCGA-D7-6527 
"PARK2 WILD-TYPE" "PARK2 WILD-TYPE" "PARK2 WILD-TYPE"   "PARK2 MUTATED" 
     TCGA-D7-6528      TCGA-D7-6815      TCGA-D7-6817      TCGA-D7-6818 
"PARK2 WILD-TYPE" "PARK2 WILD-TYPE" "PARK2 WILD-TYPE" "PARK2 WILD-TYPE" 
     TCGA-D7-6820      TCGA-D7-6822      TCGA-EQ-5647      TCGA-F1-6177 
"PARK2 WILD-TYPE" "PARK2 WILD-TYPE" "PARK2 WILD-TYPE"   "PARK2 MUTATED" 
     TCGA-F1-6874 
"PARK2 WILD-TYPE" 
     TCGA-B7-5816      TCGA-B7-5818      TCGA-BR-6452      TCGA-BR-6455 
"PARK2 WILD-TYPE" "PARK2 WILD-TYPE"   "PARK2 MUTATED" "PARK2 WILD-TYPE" 
     TCGA-BR-6457      TCGA-BR-6458      TCGA-BR-6564      TCGA-BR-6565 
"PARK2 WILD-TYPE" "PARK2 WILD-TYPE" "PARK2 WILD-TYPE" "PARK2 WILD-TYPE" 
     TCGA-BR-6566      TCGA-BR-6705      TCGA-BR-6706      TCGA-BR-6707 
"PARK2 WILD-TYPE" "PARK2 WILD-TYPE" "PARK2 WILD-TYPE" "PARK2 WILD-TYPE" 
     TCGA-BR-6709      TCGA-BR-6710      TCGA-BR-6801      TCGA-BR-6802 
"PARK2 WILD-TYPE" "PARK2 WILD-TYPE" "PARK2 WILD-TYPE" "PARK2 WILD-TYPE" 
     TCGA-BR-6803      TCGA-BR-6852      TCGA-CD-5798      TCGA-CD-5799 
"PARK2 WILD-TYPE" "PARK2 WILD-TYPE" "PARK2 WILD-TYPE" "PARK2 WILD-TYPE" 
     TCGA-CD-5800      TCGA-CD-5801      TCGA-CD-5802      TCGA-CD-5803 
"PARK2 WILD-TYPE" "PARK2 WILD-TYPE" "PARK2 WILD-TYPE" "PARK2 WILD-TYPE" 
     TCGA-CD-5813      TCGA-CG-4300      TCGA-CG-4301      TCGA-CG-4304 
"PARK2 WILD-TYPE" "PARK2 WILD-TYPE" "PARK2 WILD-TYPE" "PARK2 WILD-TYPE" 
     TCGA-CG-4305      TCGA-CG-4306      TCGA-CG-4436      TCGA-CG-4437 
  "PARK2 MUTATED"   "PARK2 MUTATED" "PARK2 WILD-TYPE"   "PARK2 MUTATED" 
     TCGA-CG-4438      TCGA-CG-4440      TCGA-CG-4441      TCGA-CG-4443 
"PARK2 WILD-TYPE" "PARK2 WILD-TYPE" "PARK2 WILD-TYPE" "PARK2 WILD-TYPE" 
     TCGA-CG-4444      TCGA-CG-4449      TCGA-CG-4455      TCGA-CG-4460 
"PARK2 WILD-TYPE" "PARK2 WILD-TYPE" "PARK2 WILD-TYPE" "PARK2 WILD-TYPE" 
     TCGA-CG-4462      TCGA-CG-4465      TCGA-CG-4466      TCGA-CG-4469 
"PARK2 WILD-TYPE" "PARK2 WILD-TYPE" "PARK2 WILD-TYPE" "PARK2 WILD-TYPE" 
     TCGA-CG-4472      TCGA-CG-4474      TCGA-CG-4477      TCGA-CG-5716 
"PARK2 WILD-TYPE" "PARK2 WILD-TYPE" "PARK2 WILD-TYPE" "PARK2 WILD-TYPE" 
     TCGA-CG-5717      TCGA-CG-5718      TCGA-CG-5719      TCGA-CG-5720 
"PARK2 WILD-TYPE" "PARK2 WILD-TYPE" "PARK2 WILD-TYPE" "PARK2 WILD-TYPE" 
     TCGA-CG-5721      TCGA-CG-5722      TCGA-CG-5723      TCGA-CG-5724 
"PARK2 WILD-TYPE" "PARK2 WILD-TYPE" "PARK2 WILD-TYPE" "PARK2 WILD-TYPE" 
     TCGA-CG-5725      TCGA-CG-5726      TCGA-CG-5727      TCGA-CG-5728 
"PARK2 WILD-TYPE" "PARK2 WILD-TYPE" "PARK2 WILD-TYPE" "PARK2 WILD-TYPE" 
     TCGA-CG-5730      TCGA-CG-5732      TCGA-CG-5733      TCGA-CG-5734 
"PARK2 WILD-TYPE" "PARK2 WILD-TYPE" "PARK2 WILD-TYPE" "PARK2 WILD-TYPE" 
     TCGA-D7-5577      TCGA-D7-5578      TCGA-D7-5579      TCGA-D7-6518 
"PARK2 WILD-TYPE" "PARK2 WILD-TYPE" "PARK2 WILD-TYPE" "PARK2 WILD-TYPE" 
     TCGA-D7-6519      TCGA-D7-6520      TCGA-D7-6521      TCGA-D7-6522 
"PARK2 WILD-TYPE" "PARK2 WILD-TYPE" "PARK2 WILD-TYPE" "PARK2 WILD-TYPE" 
     TCGA-D7-6524      TCGA-D7-6525      TCGA-D7-6526      TCGA-D7-6527 
"PARK2 WILD-TYPE" "PARK2 WILD-TYPE" "PARK2 WILD-TYPE"   "PARK2 MUTATED" 
     TCGA-D7-6528      TCGA-D7-6815      TCGA-D7-6817      TCGA-D7-6818 
"PARK2 WILD-TYPE" "PARK2 WILD-TYPE" "PARK2 WILD-TYPE" "PARK2 WILD-TYPE" 
     TCGA-D7-6820      TCGA-D7-6822      TCGA-EQ-5647      TCGA-F1-6177 
"PARK2 WILD-TYPE" "PARK2 WILD-TYPE" "PARK2 WILD-TYPE"   "PARK2 MUTATED" 
     TCGA-F1-6874 
"PARK2 WILD-TYPE" 
     TCGA-B7-5816      TCGA-B7-5818      TCGA-BR-6452      TCGA-BR-6455 
"PARK2 WILD-TYPE" "PARK2 WILD-TYPE"   "PARK2 MUTATED" "PARK2 WILD-TYPE" 
     TCGA-BR-6457      TCGA-BR-6458      TCGA-BR-6564      TCGA-BR-6565 
"PARK2 WILD-TYPE" "PARK2 WILD-TYPE" "PARK2 WILD-TYPE" "PARK2 WILD-TYPE" 
     TCGA-BR-6566      TCGA-BR-6705      TCGA-BR-6706      TCGA-BR-6707 
"PARK2 WILD-TYPE" "PARK2 WILD-TYPE" "PARK2 WILD-TYPE" "PARK2 WILD-TYPE" 
     TCGA-BR-6709      TCGA-BR-6710      TCGA-BR-6801      TCGA-BR-6802 
"PARK2 WILD-TYPE" "PARK2 WILD-TYPE" "PARK2 WILD-TYPE" "PARK2 WILD-TYPE" 
     TCGA-BR-6803      TCGA-BR-6852      TCGA-CD-5798      TCGA-CD-5799 
"PARK2 WILD-TYPE" "PARK2 WILD-TYPE" "PARK2 WILD-TYPE" "PARK2 WILD-TYPE" 
     TCGA-CD-5800      TCGA-CD-5801      TCGA-CD-5802      TCGA-CD-5803 
"PARK2 WILD-TYPE" "PARK2 WILD-TYPE" "PARK2 WILD-TYPE" "PARK2 WILD-TYPE" 
     TCGA-CD-5813      TCGA-CG-4300      TCGA-CG-4301      TCGA-CG-4304 
"PARK2 WILD-TYPE" "PARK2 WILD-TYPE" "PARK2 WILD-TYPE" "PARK2 WILD-TYPE" 
     TCGA-CG-4305      TCGA-CG-4306      TCGA-CG-4436      TCGA-CG-4437 
  "PARK2 MUTATED"   "PARK2 MUTATED" "PARK2 WILD-TYPE"   "PARK2 MUTATED" 
     TCGA-CG-4438      TCGA-CG-4440      TCGA-CG-4441      TCGA-CG-4443 
"PARK2 WILD-TYPE" "PARK2 WILD-TYPE" "PARK2 WILD-TYPE" "PARK2 WILD-TYPE" 
     TCGA-CG-4444      TCGA-CG-4449      TCGA-CG-4455      TCGA-CG-4460 
"PARK2 WILD-TYPE" "PARK2 WILD-TYPE" "PARK2 WILD-TYPE" "PARK2 WILD-TYPE" 
     TCGA-CG-4462      TCGA-CG-4465      TCGA-CG-4466      TCGA-CG-4469 
"PARK2 WILD-TYPE" "PARK2 WILD-TYPE" "PARK2 WILD-TYPE" "PARK2 WILD-TYPE" 
     TCGA-CG-4472      TCGA-CG-4474      TCGA-CG-4477      TCGA-CG-5716 
"PARK2 WILD-TYPE" "PARK2 WILD-TYPE" "PARK2 WILD-TYPE" "PARK2 WILD-TYPE" 
     TCGA-CG-5717      TCGA-CG-5718      TCGA-CG-5719      TCGA-CG-5720 
"PARK2 WILD-TYPE" "PARK2 WILD-TYPE" "PARK2 WILD-TYPE" "PARK2 WILD-TYPE" 
     TCGA-CG-5721      TCGA-CG-5722      TCGA-CG-5723      TCGA-CG-5724 
"PARK2 WILD-TYPE" "PARK2 WILD-TYPE" "PARK2 WILD-TYPE" "PARK2 WILD-TYPE" 
     TCGA-CG-5725      TCGA-CG-5726      TCGA-CG-5727      TCGA-CG-5728 
"PARK2 WILD-TYPE" "PARK2 WILD-TYPE" "PARK2 WILD-TYPE" "PARK2 WILD-TYPE" 
     TCGA-CG-5730      TCGA-CG-5732      TCGA-CG-5733      TCGA-CG-5734 
"PARK2 WILD-TYPE" "PARK2 WILD-TYPE" "PARK2 WILD-TYPE" "PARK2 WILD-TYPE" 
     TCGA-D7-5577      TCGA-D7-5578      TCGA-D7-5579      TCGA-D7-6518 
"PARK2 WILD-TYPE" "PARK2 WILD-TYPE" "PARK2 WILD-TYPE" "PARK2 WILD-TYPE" 
     TCGA-D7-6519      TCGA-D7-6520      TCGA-D7-6521      TCGA-D7-6522 
"PARK2 WILD-TYPE" "PARK2 WILD-TYPE" "PARK2 WILD-TYPE" "PARK2 WILD-TYPE" 
     TCGA-D7-6524      TCGA-D7-6525      TCGA-D7-6526      TCGA-D7-6527 
"PARK2 WILD-TYPE" "PARK2 WILD-TYPE" "PARK2 WILD-TYPE"   "PARK2 MUTATED" 
     TCGA-D7-6528      TCGA-D7-6815      TCGA-D7-6817      TCGA-D7-6818 
"PARK2 WILD-TYPE" "PARK2 WILD-TYPE" "PARK2 WILD-TYPE" "PARK2 WILD-TYPE" 
     TCGA-D7-6820      TCGA-D7-6822      TCGA-EQ-5647      TCGA-F1-6177 
"PARK2 WILD-TYPE" "PARK2 WILD-TYPE" "PARK2 WILD-TYPE"   "PARK2 MUTATED" 
     TCGA-F1-6874 
"PARK2 WILD-TYPE" 
[1] "hr=" "1.4"
D32V2, continuous
D32V3, binary
[1] "tbl2"
                 cls
clus              [,1] [,2]
  PARK2 MUTATED      3    6
  PARK2 WILD-TYPE   43   64
        clus
vv       PARK2 MUTATED PARK2 WILD-TYPE
  FEMALE             3              43
  MALE               6              64
D32V4, multiclass
D32V5, multiclass
    clus
vv   PARK2 MUTATED PARK2 WILD-TYPE
  T1             1               3
  T2             4              42
  T3             2              39
  T4             0              15
D32V6, multiclass
    clus
vv   PARK2 MUTATED PARK2 WILD-TYPE
  N0             1              34
  N1             5              34
  N2             1              18
  N3             0              12
D32V7, multiclass
    clus
vv   PARK2 MUTATED PARK2 WILD-TYPE
  M0             7              92
  M1             1              12
  MX             1               3
D32V8, multiclass
     clus
vv    PARK2 MUTATED PARK2 WILD-TYPE
  I               1              17
  II              4              28
  III             0              29
  IV              1              20

Clustering(33) Variable = PDZRN4 MUTATION ANALYSIS
D33V1, survival
                  sevent
clus2               0  1
  PDZRN4 MUTATED    6  2
  PDZRN4 WILD-TYPE 65 12
  PDZRN4 MUTATED PDZRN4 WILD-TYPE 
               8               77 
  PDZRN4 MUTATED PDZRN4 WILD-TYPE 
               2               12 
$`PDZRN4 MUTATED`
TCGA-BR-6452 TCGA-CD-5801 TCGA-CG-4440 TCGA-CG-5726 TCGA-CG-5732 TCGA-D7-5579 
        0.95         0.49         4.01        28.96        55.04         4.54 
TCGA-D7-6522 TCGA-D7-6815 
        6.90         3.65 

$`PDZRN4 WILD-TYPE`
TCGA-B7-5816 TCGA-B7-5818 TCGA-BR-6455 TCGA-BR-6457 TCGA-BR-6458 TCGA-BR-6564 
        5.62         0.10         1.41         1.35         1.35         0.82 
TCGA-BR-6565 TCGA-BR-6566 TCGA-BR-6705 TCGA-BR-6706 TCGA-BR-6707 TCGA-BR-6709 
        0.62         0.62         1.71         2.17         0.99         1.22 
TCGA-BR-6710 TCGA-BR-6801 TCGA-BR-6802 TCGA-BR-6803 TCGA-BR-6852 TCGA-CD-5798 
        0.66         1.12         0.76         0.66         0.26         0.82 
TCGA-CD-5799 TCGA-CD-5800 TCGA-CD-5802 TCGA-CD-5803 TCGA-CD-5813 TCGA-CG-4300 
        0.69         0.36         0.30         0.07         0.39        20.02 
TCGA-CG-4301 TCGA-CG-4304 TCGA-CG-4305 TCGA-CG-4306 TCGA-CG-4436 TCGA-CG-4437 
        3.02        27.02        15.95         1.02        52.96         8.05 
TCGA-CG-4438 TCGA-CG-4441 TCGA-CG-4443 TCGA-CG-4444 TCGA-CG-4449 TCGA-CG-4455 
       54.05        14.01        29.98        47.05        19.07        12.03 
TCGA-CG-4460 TCGA-CG-4462 TCGA-CG-4465 TCGA-CG-4466 TCGA-CG-4469 TCGA-CG-4472 
       21.99         1.02         8.98        18.94         7.07        12.00 
TCGA-CG-4474 TCGA-CG-4477 TCGA-CG-5716 TCGA-CG-5717 TCGA-CG-5718 TCGA-CG-5719 
        1.02         1.02         1.02         6.94         1.02         1.02 
TCGA-CG-5720 TCGA-CG-5721 TCGA-CG-5722 TCGA-CG-5723 TCGA-CG-5724 TCGA-CG-5725 
        0.99         5.98         0.95        70.06        12.03        15.02 
TCGA-CG-5727 TCGA-CG-5728 TCGA-CG-5730 TCGA-CG-5733 TCGA-CG-5734 TCGA-D7-5577 
       31.04        65.10         4.01        21.07         7.99         8.65 
TCGA-D7-5578 TCGA-D7-6518 TCGA-D7-6519 TCGA-D7-6520 TCGA-D7-6521 TCGA-D7-6524 
        3.58         9.80        15.65         9.63         8.19         0.69 
TCGA-D7-6525 TCGA-D7-6526 TCGA-D7-6527 TCGA-D7-6528 TCGA-D7-6817 TCGA-D7-6818 
        5.95         6.61         4.14         1.68         4.70         4.04 
TCGA-D7-6820 TCGA-D7-6822 TCGA-EQ-5647 TCGA-F1-6177 TCGA-F1-6874 
        2.93         4.27         0.62         6.54         2.01 

  PDZRN4 MUTATED PDZRN4 WILD-TYPE 
            0.49             0.07 
  PDZRN4 MUTATED PDZRN4 WILD-TYPE 
           55.04            70.06 
  PDZRN4 MUTATED PDZRN4 WILD-TYPE 
           4.275            4.010 
[1] "0.5 - 55.0 (4.3)" "0.1 - 70.1 (4.0)"
      TCGA-B7-5816       TCGA-B7-5818       TCGA-BR-6452       TCGA-BR-6455 
"PDZRN4 WILD-TYPE" "PDZRN4 WILD-TYPE"   "PDZRN4 MUTATED" "PDZRN4 WILD-TYPE" 
      TCGA-BR-6457       TCGA-BR-6458       TCGA-BR-6564       TCGA-BR-6565 
"PDZRN4 WILD-TYPE" "PDZRN4 WILD-TYPE" "PDZRN4 WILD-TYPE" "PDZRN4 WILD-TYPE" 
      TCGA-BR-6566       TCGA-BR-6705       TCGA-BR-6706       TCGA-BR-6707 
"PDZRN4 WILD-TYPE" "PDZRN4 WILD-TYPE" "PDZRN4 WILD-TYPE" "PDZRN4 WILD-TYPE" 
      TCGA-BR-6709       TCGA-BR-6710       TCGA-BR-6801       TCGA-BR-6802 
"PDZRN4 WILD-TYPE" "PDZRN4 WILD-TYPE" "PDZRN4 WILD-TYPE" "PDZRN4 WILD-TYPE" 
      TCGA-BR-6803       TCGA-BR-6852       TCGA-CD-5798       TCGA-CD-5799 
"PDZRN4 WILD-TYPE" "PDZRN4 WILD-TYPE" "PDZRN4 WILD-TYPE" "PDZRN4 WILD-TYPE" 
      TCGA-CD-5800       TCGA-CD-5801       TCGA-CD-5802       TCGA-CD-5803 
"PDZRN4 WILD-TYPE"   "PDZRN4 MUTATED" "PDZRN4 WILD-TYPE" "PDZRN4 WILD-TYPE" 
      TCGA-CD-5813       TCGA-CG-4300       TCGA-CG-4301       TCGA-CG-4304 
"PDZRN4 WILD-TYPE" "PDZRN4 WILD-TYPE" "PDZRN4 WILD-TYPE" "PDZRN4 WILD-TYPE" 
      TCGA-CG-4305       TCGA-CG-4306       TCGA-CG-4436       TCGA-CG-4437 
"PDZRN4 WILD-TYPE" "PDZRN4 WILD-TYPE" "PDZRN4 WILD-TYPE" "PDZRN4 WILD-TYPE" 
      TCGA-CG-4438       TCGA-CG-4440       TCGA-CG-4441       TCGA-CG-4443 
"PDZRN4 WILD-TYPE"   "PDZRN4 MUTATED" "PDZRN4 WILD-TYPE" "PDZRN4 WILD-TYPE" 
      TCGA-CG-4444       TCGA-CG-4449       TCGA-CG-4455       TCGA-CG-4460 
"PDZRN4 WILD-TYPE" "PDZRN4 WILD-TYPE" "PDZRN4 WILD-TYPE" "PDZRN4 WILD-TYPE" 
      TCGA-CG-4462       TCGA-CG-4465       TCGA-CG-4466       TCGA-CG-4469 
"PDZRN4 WILD-TYPE" "PDZRN4 WILD-TYPE" "PDZRN4 WILD-TYPE" "PDZRN4 WILD-TYPE" 
      TCGA-CG-4472       TCGA-CG-4474       TCGA-CG-4477       TCGA-CG-5716 
"PDZRN4 WILD-TYPE" "PDZRN4 WILD-TYPE" "PDZRN4 WILD-TYPE" "PDZRN4 WILD-TYPE" 
      TCGA-CG-5717       TCGA-CG-5718       TCGA-CG-5719       TCGA-CG-5720 
"PDZRN4 WILD-TYPE" "PDZRN4 WILD-TYPE" "PDZRN4 WILD-TYPE" "PDZRN4 WILD-TYPE" 
      TCGA-CG-5721       TCGA-CG-5722       TCGA-CG-5723       TCGA-CG-5724 
"PDZRN4 WILD-TYPE" "PDZRN4 WILD-TYPE" "PDZRN4 WILD-TYPE" "PDZRN4 WILD-TYPE" 
      TCGA-CG-5725       TCGA-CG-5726       TCGA-CG-5727       TCGA-CG-5728 
"PDZRN4 WILD-TYPE"   "PDZRN4 MUTATED" "PDZRN4 WILD-TYPE" "PDZRN4 WILD-TYPE" 
      TCGA-CG-5730       TCGA-CG-5732       TCGA-CG-5733       TCGA-CG-5734 
"PDZRN4 WILD-TYPE"   "PDZRN4 MUTATED" "PDZRN4 WILD-TYPE" "PDZRN4 WILD-TYPE" 
      TCGA-D7-5577       TCGA-D7-5578       TCGA-D7-5579       TCGA-D7-6518 
"PDZRN4 WILD-TYPE" "PDZRN4 WILD-TYPE"   "PDZRN4 MUTATED" "PDZRN4 WILD-TYPE" 
      TCGA-D7-6519       TCGA-D7-6520       TCGA-D7-6521       TCGA-D7-6522 
"PDZRN4 WILD-TYPE" "PDZRN4 WILD-TYPE" "PDZRN4 WILD-TYPE"   "PDZRN4 MUTATED" 
      TCGA-D7-6524       TCGA-D7-6525       TCGA-D7-6526       TCGA-D7-6527 
"PDZRN4 WILD-TYPE" "PDZRN4 WILD-TYPE" "PDZRN4 WILD-TYPE" "PDZRN4 WILD-TYPE" 
      TCGA-D7-6528       TCGA-D7-6815       TCGA-D7-6817       TCGA-D7-6818 
"PDZRN4 WILD-TYPE"   "PDZRN4 MUTATED" "PDZRN4 WILD-TYPE" "PDZRN4 WILD-TYPE" 
      TCGA-D7-6820       TCGA-D7-6822       TCGA-EQ-5647       TCGA-F1-6177 
"PDZRN4 WILD-TYPE" "PDZRN4 WILD-TYPE" "PDZRN4 WILD-TYPE" "PDZRN4 WILD-TYPE" 
      TCGA-F1-6874 
"PDZRN4 WILD-TYPE" 
      TCGA-B7-5816       TCGA-B7-5818       TCGA-BR-6452       TCGA-BR-6455 
"PDZRN4 WILD-TYPE" "PDZRN4 WILD-TYPE"   "PDZRN4 MUTATED" "PDZRN4 WILD-TYPE" 
      TCGA-BR-6457       TCGA-BR-6458       TCGA-BR-6564       TCGA-BR-6565 
"PDZRN4 WILD-TYPE" "PDZRN4 WILD-TYPE" "PDZRN4 WILD-TYPE" "PDZRN4 WILD-TYPE" 
      TCGA-BR-6566       TCGA-BR-6705       TCGA-BR-6706       TCGA-BR-6707 
"PDZRN4 WILD-TYPE" "PDZRN4 WILD-TYPE" "PDZRN4 WILD-TYPE" "PDZRN4 WILD-TYPE" 
      TCGA-BR-6709       TCGA-BR-6710       TCGA-BR-6801       TCGA-BR-6802 
"PDZRN4 WILD-TYPE" "PDZRN4 WILD-TYPE" "PDZRN4 WILD-TYPE" "PDZRN4 WILD-TYPE" 
      TCGA-BR-6803       TCGA-BR-6852       TCGA-CD-5798       TCGA-CD-5799 
"PDZRN4 WILD-TYPE" "PDZRN4 WILD-TYPE" "PDZRN4 WILD-TYPE" "PDZRN4 WILD-TYPE" 
      TCGA-CD-5800       TCGA-CD-5801       TCGA-CD-5802       TCGA-CD-5803 
"PDZRN4 WILD-TYPE"   "PDZRN4 MUTATED" "PDZRN4 WILD-TYPE" "PDZRN4 WILD-TYPE" 
      TCGA-CD-5813       TCGA-CG-4300       TCGA-CG-4301       TCGA-CG-4304 
"PDZRN4 WILD-TYPE" "PDZRN4 WILD-TYPE" "PDZRN4 WILD-TYPE" "PDZRN4 WILD-TYPE" 
      TCGA-CG-4305       TCGA-CG-4306       TCGA-CG-4436       TCGA-CG-4437 
"PDZRN4 WILD-TYPE" "PDZRN4 WILD-TYPE" "PDZRN4 WILD-TYPE" "PDZRN4 WILD-TYPE" 
      TCGA-CG-4438       TCGA-CG-4440       TCGA-CG-4441       TCGA-CG-4443 
"PDZRN4 WILD-TYPE"   "PDZRN4 MUTATED" "PDZRN4 WILD-TYPE" "PDZRN4 WILD-TYPE" 
      TCGA-CG-4444       TCGA-CG-4449       TCGA-CG-4455       TCGA-CG-4460 
"PDZRN4 WILD-TYPE" "PDZRN4 WILD-TYPE" "PDZRN4 WILD-TYPE" "PDZRN4 WILD-TYPE" 
      TCGA-CG-4462       TCGA-CG-4465       TCGA-CG-4466       TCGA-CG-4469 
"PDZRN4 WILD-TYPE" "PDZRN4 WILD-TYPE" "PDZRN4 WILD-TYPE" "PDZRN4 WILD-TYPE" 
      TCGA-CG-4472       TCGA-CG-4474       TCGA-CG-4477       TCGA-CG-5716 
"PDZRN4 WILD-TYPE" "PDZRN4 WILD-TYPE" "PDZRN4 WILD-TYPE" "PDZRN4 WILD-TYPE" 
      TCGA-CG-5717       TCGA-CG-5718       TCGA-CG-5719       TCGA-CG-5720 
"PDZRN4 WILD-TYPE" "PDZRN4 WILD-TYPE" "PDZRN4 WILD-TYPE" "PDZRN4 WILD-TYPE" 
      TCGA-CG-5721       TCGA-CG-5722       TCGA-CG-5723       TCGA-CG-5724 
"PDZRN4 WILD-TYPE" "PDZRN4 WILD-TYPE" "PDZRN4 WILD-TYPE" "PDZRN4 WILD-TYPE" 
      TCGA-CG-5725       TCGA-CG-5726       TCGA-CG-5727       TCGA-CG-5728 
"PDZRN4 WILD-TYPE"   "PDZRN4 MUTATED" "PDZRN4 WILD-TYPE" "PDZRN4 WILD-TYPE" 
      TCGA-CG-5730       TCGA-CG-5732       TCGA-CG-5733       TCGA-CG-5734 
"PDZRN4 WILD-TYPE"   "PDZRN4 MUTATED" "PDZRN4 WILD-TYPE" "PDZRN4 WILD-TYPE" 
      TCGA-D7-5577       TCGA-D7-5578       TCGA-D7-5579       TCGA-D7-6518 
"PDZRN4 WILD-TYPE" "PDZRN4 WILD-TYPE"   "PDZRN4 MUTATED" "PDZRN4 WILD-TYPE" 
      TCGA-D7-6519       TCGA-D7-6520       TCGA-D7-6521       TCGA-D7-6522 
"PDZRN4 WILD-TYPE" "PDZRN4 WILD-TYPE" "PDZRN4 WILD-TYPE"   "PDZRN4 MUTATED" 
      TCGA-D7-6524       TCGA-D7-6525       TCGA-D7-6526       TCGA-D7-6527 
"PDZRN4 WILD-TYPE" "PDZRN4 WILD-TYPE" "PDZRN4 WILD-TYPE" "PDZRN4 WILD-TYPE" 
      TCGA-D7-6528       TCGA-D7-6815       TCGA-D7-6817       TCGA-D7-6818 
"PDZRN4 WILD-TYPE"   "PDZRN4 MUTATED" "PDZRN4 WILD-TYPE" "PDZRN4 WILD-TYPE" 
      TCGA-D7-6820       TCGA-D7-6822       TCGA-EQ-5647       TCGA-F1-6177 
"PDZRN4 WILD-TYPE" "PDZRN4 WILD-TYPE" "PDZRN4 WILD-TYPE" "PDZRN4 WILD-TYPE" 
      TCGA-F1-6874 
"PDZRN4 WILD-TYPE" 
      TCGA-B7-5816       TCGA-B7-5818       TCGA-BR-6452       TCGA-BR-6455 
"PDZRN4 WILD-TYPE" "PDZRN4 WILD-TYPE"   "PDZRN4 MUTATED" "PDZRN4 WILD-TYPE" 
      TCGA-BR-6457       TCGA-BR-6458       TCGA-BR-6564       TCGA-BR-6565 
"PDZRN4 WILD-TYPE" "PDZRN4 WILD-TYPE" "PDZRN4 WILD-TYPE" "PDZRN4 WILD-TYPE" 
      TCGA-BR-6566       TCGA-BR-6705       TCGA-BR-6706       TCGA-BR-6707 
"PDZRN4 WILD-TYPE" "PDZRN4 WILD-TYPE" "PDZRN4 WILD-TYPE" "PDZRN4 WILD-TYPE" 
      TCGA-BR-6709       TCGA-BR-6710       TCGA-BR-6801       TCGA-BR-6802 
"PDZRN4 WILD-TYPE" "PDZRN4 WILD-TYPE" "PDZRN4 WILD-TYPE" "PDZRN4 WILD-TYPE" 
      TCGA-BR-6803       TCGA-BR-6852       TCGA-CD-5798       TCGA-CD-5799 
"PDZRN4 WILD-TYPE" "PDZRN4 WILD-TYPE" "PDZRN4 WILD-TYPE" "PDZRN4 WILD-TYPE" 
      TCGA-CD-5800       TCGA-CD-5801       TCGA-CD-5802       TCGA-CD-5803 
"PDZRN4 WILD-TYPE"   "PDZRN4 MUTATED" "PDZRN4 WILD-TYPE" "PDZRN4 WILD-TYPE" 
      TCGA-CD-5813       TCGA-CG-4300       TCGA-CG-4301       TCGA-CG-4304 
"PDZRN4 WILD-TYPE" "PDZRN4 WILD-TYPE" "PDZRN4 WILD-TYPE" "PDZRN4 WILD-TYPE" 
      TCGA-CG-4305       TCGA-CG-4306       TCGA-CG-4436       TCGA-CG-4437 
"PDZRN4 WILD-TYPE" "PDZRN4 WILD-TYPE" "PDZRN4 WILD-TYPE" "PDZRN4 WILD-TYPE" 
      TCGA-CG-4438       TCGA-CG-4440       TCGA-CG-4441       TCGA-CG-4443 
"PDZRN4 WILD-TYPE"   "PDZRN4 MUTATED" "PDZRN4 WILD-TYPE" "PDZRN4 WILD-TYPE" 
      TCGA-CG-4444       TCGA-CG-4449       TCGA-CG-4455       TCGA-CG-4460 
"PDZRN4 WILD-TYPE" "PDZRN4 WILD-TYPE" "PDZRN4 WILD-TYPE" "PDZRN4 WILD-TYPE" 
      TCGA-CG-4462       TCGA-CG-4465       TCGA-CG-4466       TCGA-CG-4469 
"PDZRN4 WILD-TYPE" "PDZRN4 WILD-TYPE" "PDZRN4 WILD-TYPE" "PDZRN4 WILD-TYPE" 
      TCGA-CG-4472       TCGA-CG-4474       TCGA-CG-4477       TCGA-CG-5716 
"PDZRN4 WILD-TYPE" "PDZRN4 WILD-TYPE" "PDZRN4 WILD-TYPE" "PDZRN4 WILD-TYPE" 
      TCGA-CG-5717       TCGA-CG-5718       TCGA-CG-5719       TCGA-CG-5720 
"PDZRN4 WILD-TYPE" "PDZRN4 WILD-TYPE" "PDZRN4 WILD-TYPE" "PDZRN4 WILD-TYPE" 
      TCGA-CG-5721       TCGA-CG-5722       TCGA-CG-5723       TCGA-CG-5724 
"PDZRN4 WILD-TYPE" "PDZRN4 WILD-TYPE" "PDZRN4 WILD-TYPE" "PDZRN4 WILD-TYPE" 
      TCGA-CG-5725       TCGA-CG-5726       TCGA-CG-5727       TCGA-CG-5728 
"PDZRN4 WILD-TYPE"   "PDZRN4 MUTATED" "PDZRN4 WILD-TYPE" "PDZRN4 WILD-TYPE" 
      TCGA-CG-5730       TCGA-CG-5732       TCGA-CG-5733       TCGA-CG-5734 
"PDZRN4 WILD-TYPE"   "PDZRN4 MUTATED" "PDZRN4 WILD-TYPE" "PDZRN4 WILD-TYPE" 
      TCGA-D7-5577       TCGA-D7-5578       TCGA-D7-5579       TCGA-D7-6518 
"PDZRN4 WILD-TYPE" "PDZRN4 WILD-TYPE"   "PDZRN4 MUTATED" "PDZRN4 WILD-TYPE" 
      TCGA-D7-6519       TCGA-D7-6520       TCGA-D7-6521       TCGA-D7-6522 
"PDZRN4 WILD-TYPE" "PDZRN4 WILD-TYPE" "PDZRN4 WILD-TYPE"   "PDZRN4 MUTATED" 
      TCGA-D7-6524       TCGA-D7-6525       TCGA-D7-6526       TCGA-D7-6527 
"PDZRN4 WILD-TYPE" "PDZRN4 WILD-TYPE" "PDZRN4 WILD-TYPE" "PDZRN4 WILD-TYPE" 
      TCGA-D7-6528       TCGA-D7-6815       TCGA-D7-6817       TCGA-D7-6818 
"PDZRN4 WILD-TYPE"   "PDZRN4 MUTATED" "PDZRN4 WILD-TYPE" "PDZRN4 WILD-TYPE" 
      TCGA-D7-6820       TCGA-D7-6822       TCGA-EQ-5647       TCGA-F1-6177 
"PDZRN4 WILD-TYPE" "PDZRN4 WILD-TYPE" "PDZRN4 WILD-TYPE" "PDZRN4 WILD-TYPE" 
      TCGA-F1-6874 
"PDZRN4 WILD-TYPE" 
[1] "hr=" "1.3"
D33V2, continuous
D33V3, binary
[1] "tbl2"
                  cls
clus               [,1] [,2]
  PDZRN4 MUTATED      3    8
  PDZRN4 WILD-TYPE   43   62
        clus
vv       PDZRN4 MUTATED PDZRN4 WILD-TYPE
  FEMALE              3               43
  MALE                8               62
D33V4, multiclass
D33V5, multiclass
    clus
vv   PDZRN4 MUTATED PDZRN4 WILD-TYPE
  T1              1                3
  T2              3               43
  T3              6               35
  T4              0               15
D33V6, multiclass
    clus
vv   PDZRN4 MUTATED PDZRN4 WILD-TYPE
  N0              3               32
  N1              3               36
  N2              2               17
  N3              2               10
D33V7, multiclass
    clus
vv   PDZRN4 MUTATED PDZRN4 WILD-TYPE
  M0              8               91
  M1              1               12
  MX              2                2
D33V8, multiclass
     clus
vv    PDZRN4 MUTATED PDZRN4 WILD-TYPE
  I                2               16
  II               2               30
  III              3               26
  IV               2               19

Clustering(34) Variable = CYP7B1 MUTATION ANALYSIS
D34V1, survival
                  sevent
clus2               0  1
  CYP7B1 MUTATED    4  1
  CYP7B1 WILD-TYPE 67 13
  CYP7B1 MUTATED CYP7B1 WILD-TYPE 
               5               80 
  CYP7B1 MUTATED CYP7B1 WILD-TYPE 
               1               13 
$`CYP7B1 MUTATED`
TCGA-CD-5798 TCGA-CG-4465 TCGA-CG-5728 TCGA-D7-5579 TCGA-D7-6818 
        0.82         8.98        65.10         4.54         4.04 

$`CYP7B1 WILD-TYPE`
TCGA-B7-5816 TCGA-B7-5818 TCGA-BR-6452 TCGA-BR-6455 TCGA-BR-6457 TCGA-BR-6458 
        5.62         0.10         0.95         1.41         1.35         1.35 
TCGA-BR-6564 TCGA-BR-6565 TCGA-BR-6566 TCGA-BR-6705 TCGA-BR-6706 TCGA-BR-6707 
        0.82         0.62         0.62         1.71         2.17         0.99 
TCGA-BR-6709 TCGA-BR-6710 TCGA-BR-6801 TCGA-BR-6802 TCGA-BR-6803 TCGA-BR-6852 
        1.22         0.66         1.12         0.76         0.66         0.26 
TCGA-CD-5799 TCGA-CD-5800 TCGA-CD-5801 TCGA-CD-5802 TCGA-CD-5803 TCGA-CD-5813 
        0.69         0.36         0.49         0.30         0.07         0.39 
TCGA-CG-4300 TCGA-CG-4301 TCGA-CG-4304 TCGA-CG-4305 TCGA-CG-4306 TCGA-CG-4436 
       20.02         3.02        27.02        15.95         1.02        52.96 
TCGA-CG-4437 TCGA-CG-4438 TCGA-CG-4440 TCGA-CG-4441 TCGA-CG-4443 TCGA-CG-4444 
        8.05        54.05         4.01        14.01        29.98        47.05 
TCGA-CG-4449 TCGA-CG-4455 TCGA-CG-4460 TCGA-CG-4462 TCGA-CG-4466 TCGA-CG-4469 
       19.07        12.03        21.99         1.02        18.94         7.07 
TCGA-CG-4472 TCGA-CG-4474 TCGA-CG-4477 TCGA-CG-5716 TCGA-CG-5717 TCGA-CG-5718 
       12.00         1.02         1.02         1.02         6.94         1.02 
TCGA-CG-5719 TCGA-CG-5720 TCGA-CG-5721 TCGA-CG-5722 TCGA-CG-5723 TCGA-CG-5724 
        1.02         0.99         5.98         0.95        70.06        12.03 
TCGA-CG-5725 TCGA-CG-5726 TCGA-CG-5727 TCGA-CG-5730 TCGA-CG-5732 TCGA-CG-5733 
       15.02        28.96        31.04         4.01        55.04        21.07 
TCGA-CG-5734 TCGA-D7-5577 TCGA-D7-5578 TCGA-D7-6518 TCGA-D7-6519 TCGA-D7-6520 
        7.99         8.65         3.58         9.80        15.65         9.63 
TCGA-D7-6521 TCGA-D7-6522 TCGA-D7-6524 TCGA-D7-6525 TCGA-D7-6526 TCGA-D7-6527 
        8.19         6.90         0.69         5.95         6.61         4.14 
TCGA-D7-6528 TCGA-D7-6815 TCGA-D7-6817 TCGA-D7-6820 TCGA-D7-6822 TCGA-EQ-5647 
        1.68         3.65         4.70         2.93         4.27         0.62 
TCGA-F1-6177 TCGA-F1-6874 
        6.54         2.01 

  CYP7B1 MUTATED CYP7B1 WILD-TYPE 
            0.82             0.07 
  CYP7B1 MUTATED CYP7B1 WILD-TYPE 
           65.10            70.06 
  CYP7B1 MUTATED CYP7B1 WILD-TYPE 
            4.54             3.83 
[1] "0.8 - 65.1 (4.5)" "0.1 - 70.1 (3.8)"
      TCGA-B7-5816       TCGA-B7-5818       TCGA-BR-6452       TCGA-BR-6455 
"CYP7B1 WILD-TYPE" "CYP7B1 WILD-TYPE" "CYP7B1 WILD-TYPE" "CYP7B1 WILD-TYPE" 
      TCGA-BR-6457       TCGA-BR-6458       TCGA-BR-6564       TCGA-BR-6565 
"CYP7B1 WILD-TYPE" "CYP7B1 WILD-TYPE" "CYP7B1 WILD-TYPE" "CYP7B1 WILD-TYPE" 
      TCGA-BR-6566       TCGA-BR-6705       TCGA-BR-6706       TCGA-BR-6707 
"CYP7B1 WILD-TYPE" "CYP7B1 WILD-TYPE" "CYP7B1 WILD-TYPE" "CYP7B1 WILD-TYPE" 
      TCGA-BR-6709       TCGA-BR-6710       TCGA-BR-6801       TCGA-BR-6802 
"CYP7B1 WILD-TYPE" "CYP7B1 WILD-TYPE" "CYP7B1 WILD-TYPE" "CYP7B1 WILD-TYPE" 
      TCGA-BR-6803       TCGA-BR-6852       TCGA-CD-5798       TCGA-CD-5799 
"CYP7B1 WILD-TYPE" "CYP7B1 WILD-TYPE"   "CYP7B1 MUTATED" "CYP7B1 WILD-TYPE" 
      TCGA-CD-5800       TCGA-CD-5801       TCGA-CD-5802       TCGA-CD-5803 
"CYP7B1 WILD-TYPE" "CYP7B1 WILD-TYPE" "CYP7B1 WILD-TYPE" "CYP7B1 WILD-TYPE" 
      TCGA-CD-5813       TCGA-CG-4300       TCGA-CG-4301       TCGA-CG-4304 
"CYP7B1 WILD-TYPE" "CYP7B1 WILD-TYPE" "CYP7B1 WILD-TYPE" "CYP7B1 WILD-TYPE" 
      TCGA-CG-4305       TCGA-CG-4306       TCGA-CG-4436       TCGA-CG-4437 
"CYP7B1 WILD-TYPE" "CYP7B1 WILD-TYPE" "CYP7B1 WILD-TYPE" "CYP7B1 WILD-TYPE" 
      TCGA-CG-4438       TCGA-CG-4440       TCGA-CG-4441       TCGA-CG-4443 
"CYP7B1 WILD-TYPE" "CYP7B1 WILD-TYPE" "CYP7B1 WILD-TYPE" "CYP7B1 WILD-TYPE" 
      TCGA-CG-4444       TCGA-CG-4449       TCGA-CG-4455       TCGA-CG-4460 
"CYP7B1 WILD-TYPE" "CYP7B1 WILD-TYPE" "CYP7B1 WILD-TYPE" "CYP7B1 WILD-TYPE" 
      TCGA-CG-4462       TCGA-CG-4465       TCGA-CG-4466       TCGA-CG-4469 
"CYP7B1 WILD-TYPE"   "CYP7B1 MUTATED" "CYP7B1 WILD-TYPE" "CYP7B1 WILD-TYPE" 
      TCGA-CG-4472       TCGA-CG-4474       TCGA-CG-4477       TCGA-CG-5716 
"CYP7B1 WILD-TYPE" "CYP7B1 WILD-TYPE" "CYP7B1 WILD-TYPE" "CYP7B1 WILD-TYPE" 
      TCGA-CG-5717       TCGA-CG-5718       TCGA-CG-5719       TCGA-CG-5720 
"CYP7B1 WILD-TYPE" "CYP7B1 WILD-TYPE" "CYP7B1 WILD-TYPE" "CYP7B1 WILD-TYPE" 
      TCGA-CG-5721       TCGA-CG-5722       TCGA-CG-5723       TCGA-CG-5724 
"CYP7B1 WILD-TYPE" "CYP7B1 WILD-TYPE" "CYP7B1 WILD-TYPE" "CYP7B1 WILD-TYPE" 
      TCGA-CG-5725       TCGA-CG-5726       TCGA-CG-5727       TCGA-CG-5728 
"CYP7B1 WILD-TYPE" "CYP7B1 WILD-TYPE" "CYP7B1 WILD-TYPE"   "CYP7B1 MUTATED" 
      TCGA-CG-5730       TCGA-CG-5732       TCGA-CG-5733       TCGA-CG-5734 
"CYP7B1 WILD-TYPE" "CYP7B1 WILD-TYPE" "CYP7B1 WILD-TYPE" "CYP7B1 WILD-TYPE" 
      TCGA-D7-5577       TCGA-D7-5578       TCGA-D7-5579       TCGA-D7-6518 
"CYP7B1 WILD-TYPE" "CYP7B1 WILD-TYPE"   "CYP7B1 MUTATED" "CYP7B1 WILD-TYPE" 
      TCGA-D7-6519       TCGA-D7-6520       TCGA-D7-6521       TCGA-D7-6522 
"CYP7B1 WILD-TYPE" "CYP7B1 WILD-TYPE" "CYP7B1 WILD-TYPE" "CYP7B1 WILD-TYPE" 
      TCGA-D7-6524       TCGA-D7-6525       TCGA-D7-6526       TCGA-D7-6527 
"CYP7B1 WILD-TYPE" "CYP7B1 WILD-TYPE" "CYP7B1 WILD-TYPE" "CYP7B1 WILD-TYPE" 
      TCGA-D7-6528       TCGA-D7-6815       TCGA-D7-6817       TCGA-D7-6818 
"CYP7B1 WILD-TYPE" "CYP7B1 WILD-TYPE" "CYP7B1 WILD-TYPE"   "CYP7B1 MUTATED" 
      TCGA-D7-6820       TCGA-D7-6822       TCGA-EQ-5647       TCGA-F1-6177 
"CYP7B1 WILD-TYPE" "CYP7B1 WILD-TYPE" "CYP7B1 WILD-TYPE" "CYP7B1 WILD-TYPE" 
      TCGA-F1-6874 
"CYP7B1 WILD-TYPE" 
      TCGA-B7-5816       TCGA-B7-5818       TCGA-BR-6452       TCGA-BR-6455 
"CYP7B1 WILD-TYPE" "CYP7B1 WILD-TYPE" "CYP7B1 WILD-TYPE" "CYP7B1 WILD-TYPE" 
      TCGA-BR-6457       TCGA-BR-6458       TCGA-BR-6564       TCGA-BR-6565 
"CYP7B1 WILD-TYPE" "CYP7B1 WILD-TYPE" "CYP7B1 WILD-TYPE" "CYP7B1 WILD-TYPE" 
      TCGA-BR-6566       TCGA-BR-6705       TCGA-BR-6706       TCGA-BR-6707 
"CYP7B1 WILD-TYPE" "CYP7B1 WILD-TYPE" "CYP7B1 WILD-TYPE" "CYP7B1 WILD-TYPE" 
      TCGA-BR-6709       TCGA-BR-6710       TCGA-BR-6801       TCGA-BR-6802 
"CYP7B1 WILD-TYPE" "CYP7B1 WILD-TYPE" "CYP7B1 WILD-TYPE" "CYP7B1 WILD-TYPE" 
      TCGA-BR-6803       TCGA-BR-6852       TCGA-CD-5798       TCGA-CD-5799 
"CYP7B1 WILD-TYPE" "CYP7B1 WILD-TYPE"   "CYP7B1 MUTATED" "CYP7B1 WILD-TYPE" 
      TCGA-CD-5800       TCGA-CD-5801       TCGA-CD-5802       TCGA-CD-5803 
"CYP7B1 WILD-TYPE" "CYP7B1 WILD-TYPE" "CYP7B1 WILD-TYPE" "CYP7B1 WILD-TYPE" 
      TCGA-CD-5813       TCGA-CG-4300       TCGA-CG-4301       TCGA-CG-4304 
"CYP7B1 WILD-TYPE" "CYP7B1 WILD-TYPE" "CYP7B1 WILD-TYPE" "CYP7B1 WILD-TYPE" 
      TCGA-CG-4305       TCGA-CG-4306       TCGA-CG-4436       TCGA-CG-4437 
"CYP7B1 WILD-TYPE" "CYP7B1 WILD-TYPE" "CYP7B1 WILD-TYPE" "CYP7B1 WILD-TYPE" 
      TCGA-CG-4438       TCGA-CG-4440       TCGA-CG-4441       TCGA-CG-4443 
"CYP7B1 WILD-TYPE" "CYP7B1 WILD-TYPE" "CYP7B1 WILD-TYPE" "CYP7B1 WILD-TYPE" 
      TCGA-CG-4444       TCGA-CG-4449       TCGA-CG-4455       TCGA-CG-4460 
"CYP7B1 WILD-TYPE" "CYP7B1 WILD-TYPE" "CYP7B1 WILD-TYPE" "CYP7B1 WILD-TYPE" 
      TCGA-CG-4462       TCGA-CG-4465       TCGA-CG-4466       TCGA-CG-4469 
"CYP7B1 WILD-TYPE"   "CYP7B1 MUTATED" "CYP7B1 WILD-TYPE" "CYP7B1 WILD-TYPE" 
      TCGA-CG-4472       TCGA-CG-4474       TCGA-CG-4477       TCGA-CG-5716 
"CYP7B1 WILD-TYPE" "CYP7B1 WILD-TYPE" "CYP7B1 WILD-TYPE" "CYP7B1 WILD-TYPE" 
      TCGA-CG-5717       TCGA-CG-5718       TCGA-CG-5719       TCGA-CG-5720 
"CYP7B1 WILD-TYPE" "CYP7B1 WILD-TYPE" "CYP7B1 WILD-TYPE" "CYP7B1 WILD-TYPE" 
      TCGA-CG-5721       TCGA-CG-5722       TCGA-CG-5723       TCGA-CG-5724 
"CYP7B1 WILD-TYPE" "CYP7B1 WILD-TYPE" "CYP7B1 WILD-TYPE" "CYP7B1 WILD-TYPE" 
      TCGA-CG-5725       TCGA-CG-5726       TCGA-CG-5727       TCGA-CG-5728 
"CYP7B1 WILD-TYPE" "CYP7B1 WILD-TYPE" "CYP7B1 WILD-TYPE"   "CYP7B1 MUTATED" 
      TCGA-CG-5730       TCGA-CG-5732       TCGA-CG-5733       TCGA-CG-5734 
"CYP7B1 WILD-TYPE" "CYP7B1 WILD-TYPE" "CYP7B1 WILD-TYPE" "CYP7B1 WILD-TYPE" 
      TCGA-D7-5577       TCGA-D7-5578       TCGA-D7-5579       TCGA-D7-6518 
"CYP7B1 WILD-TYPE" "CYP7B1 WILD-TYPE"   "CYP7B1 MUTATED" "CYP7B1 WILD-TYPE" 
      TCGA-D7-6519       TCGA-D7-6520       TCGA-D7-6521       TCGA-D7-6522 
"CYP7B1 WILD-TYPE" "CYP7B1 WILD-TYPE" "CYP7B1 WILD-TYPE" "CYP7B1 WILD-TYPE" 
      TCGA-D7-6524       TCGA-D7-6525       TCGA-D7-6526       TCGA-D7-6527 
"CYP7B1 WILD-TYPE" "CYP7B1 WILD-TYPE" "CYP7B1 WILD-TYPE" "CYP7B1 WILD-TYPE" 
      TCGA-D7-6528       TCGA-D7-6815       TCGA-D7-6817       TCGA-D7-6818 
"CYP7B1 WILD-TYPE" "CYP7B1 WILD-TYPE" "CYP7B1 WILD-TYPE"   "CYP7B1 MUTATED" 
      TCGA-D7-6820       TCGA-D7-6822       TCGA-EQ-5647       TCGA-F1-6177 
"CYP7B1 WILD-TYPE" "CYP7B1 WILD-TYPE" "CYP7B1 WILD-TYPE" "CYP7B1 WILD-TYPE" 
      TCGA-F1-6874 
"CYP7B1 WILD-TYPE" 
      TCGA-B7-5816       TCGA-B7-5818       TCGA-BR-6452       TCGA-BR-6455 
"CYP7B1 WILD-TYPE" "CYP7B1 WILD-TYPE" "CYP7B1 WILD-TYPE" "CYP7B1 WILD-TYPE" 
      TCGA-BR-6457       TCGA-BR-6458       TCGA-BR-6564       TCGA-BR-6565 
"CYP7B1 WILD-TYPE" "CYP7B1 WILD-TYPE" "CYP7B1 WILD-TYPE" "CYP7B1 WILD-TYPE" 
      TCGA-BR-6566       TCGA-BR-6705       TCGA-BR-6706       TCGA-BR-6707 
"CYP7B1 WILD-TYPE" "CYP7B1 WILD-TYPE" "CYP7B1 WILD-TYPE" "CYP7B1 WILD-TYPE" 
      TCGA-BR-6709       TCGA-BR-6710       TCGA-BR-6801       TCGA-BR-6802 
"CYP7B1 WILD-TYPE" "CYP7B1 WILD-TYPE" "CYP7B1 WILD-TYPE" "CYP7B1 WILD-TYPE" 
      TCGA-BR-6803       TCGA-BR-6852       TCGA-CD-5798       TCGA-CD-5799 
"CYP7B1 WILD-TYPE" "CYP7B1 WILD-TYPE"   "CYP7B1 MUTATED" "CYP7B1 WILD-TYPE" 
      TCGA-CD-5800       TCGA-CD-5801       TCGA-CD-5802       TCGA-CD-5803 
"CYP7B1 WILD-TYPE" "CYP7B1 WILD-TYPE" "CYP7B1 WILD-TYPE" "CYP7B1 WILD-TYPE" 
      TCGA-CD-5813       TCGA-CG-4300       TCGA-CG-4301       TCGA-CG-4304 
"CYP7B1 WILD-TYPE" "CYP7B1 WILD-TYPE" "CYP7B1 WILD-TYPE" "CYP7B1 WILD-TYPE" 
      TCGA-CG-4305       TCGA-CG-4306       TCGA-CG-4436       TCGA-CG-4437 
"CYP7B1 WILD-TYPE" "CYP7B1 WILD-TYPE" "CYP7B1 WILD-TYPE" "CYP7B1 WILD-TYPE" 
      TCGA-CG-4438       TCGA-CG-4440       TCGA-CG-4441       TCGA-CG-4443 
"CYP7B1 WILD-TYPE" "CYP7B1 WILD-TYPE" "CYP7B1 WILD-TYPE" "CYP7B1 WILD-TYPE" 
      TCGA-CG-4444       TCGA-CG-4449       TCGA-CG-4455       TCGA-CG-4460 
"CYP7B1 WILD-TYPE" "CYP7B1 WILD-TYPE" "CYP7B1 WILD-TYPE" "CYP7B1 WILD-TYPE" 
      TCGA-CG-4462       TCGA-CG-4465       TCGA-CG-4466       TCGA-CG-4469 
"CYP7B1 WILD-TYPE"   "CYP7B1 MUTATED" "CYP7B1 WILD-TYPE" "CYP7B1 WILD-TYPE" 
      TCGA-CG-4472       TCGA-CG-4474       TCGA-CG-4477       TCGA-CG-5716 
"CYP7B1 WILD-TYPE" "CYP7B1 WILD-TYPE" "CYP7B1 WILD-TYPE" "CYP7B1 WILD-TYPE" 
      TCGA-CG-5717       TCGA-CG-5718       TCGA-CG-5719       TCGA-CG-5720 
"CYP7B1 WILD-TYPE" "CYP7B1 WILD-TYPE" "CYP7B1 WILD-TYPE" "CYP7B1 WILD-TYPE" 
      TCGA-CG-5721       TCGA-CG-5722       TCGA-CG-5723       TCGA-CG-5724 
"CYP7B1 WILD-TYPE" "CYP7B1 WILD-TYPE" "CYP7B1 WILD-TYPE" "CYP7B1 WILD-TYPE" 
      TCGA-CG-5725       TCGA-CG-5726       TCGA-CG-5727       TCGA-CG-5728 
"CYP7B1 WILD-TYPE" "CYP7B1 WILD-TYPE" "CYP7B1 WILD-TYPE"   "CYP7B1 MUTATED" 
      TCGA-CG-5730       TCGA-CG-5732       TCGA-CG-5733       TCGA-CG-5734 
"CYP7B1 WILD-TYPE" "CYP7B1 WILD-TYPE" "CYP7B1 WILD-TYPE" "CYP7B1 WILD-TYPE" 
      TCGA-D7-5577       TCGA-D7-5578       TCGA-D7-5579       TCGA-D7-6518 
"CYP7B1 WILD-TYPE" "CYP7B1 WILD-TYPE"   "CYP7B1 MUTATED" "CYP7B1 WILD-TYPE" 
      TCGA-D7-6519       TCGA-D7-6520       TCGA-D7-6521       TCGA-D7-6522 
"CYP7B1 WILD-TYPE" "CYP7B1 WILD-TYPE" "CYP7B1 WILD-TYPE" "CYP7B1 WILD-TYPE" 
      TCGA-D7-6524       TCGA-D7-6525       TCGA-D7-6526       TCGA-D7-6527 
"CYP7B1 WILD-TYPE" "CYP7B1 WILD-TYPE" "CYP7B1 WILD-TYPE" "CYP7B1 WILD-TYPE" 
      TCGA-D7-6528       TCGA-D7-6815       TCGA-D7-6817       TCGA-D7-6818 
"CYP7B1 WILD-TYPE" "CYP7B1 WILD-TYPE" "CYP7B1 WILD-TYPE"   "CYP7B1 MUTATED" 
      TCGA-D7-6820       TCGA-D7-6822       TCGA-EQ-5647       TCGA-F1-6177 
"CYP7B1 WILD-TYPE" "CYP7B1 WILD-TYPE" "CYP7B1 WILD-TYPE" "CYP7B1 WILD-TYPE" 
      TCGA-F1-6874 
"CYP7B1 WILD-TYPE" 
[1] "hr=" "1"  
D34V2, continuous
D34V3, binary
[1] "tbl2"
                  cls
clus               [,1] [,2]
  CYP7B1 MUTATED      3    4
  CYP7B1 WILD-TYPE   43   66
        clus
vv       CYP7B1 MUTATED CYP7B1 WILD-TYPE
  FEMALE              3               43
  MALE                4               66
D34V4, multiclass
D34V5, multiclass
    clus
vv   CYP7B1 MUTATED CYP7B1 WILD-TYPE
  T1              0                4
  T2              3               43
  T3              2               39
  T4              1               14
D34V6, multiclass
    clus
vv   CYP7B1 MUTATED CYP7B1 WILD-TYPE
  N0              2               33
  N1              0               39
  N2              1               18
  N3              2               10
D34V7, multiclass
    clus
vv   CYP7B1 MUTATED CYP7B1 WILD-TYPE
  M0              6               93
  M1              1               12
  MX              0                4
D34V8, multiclass
     clus
vv    CYP7B1 MUTATED CYP7B1 WILD-TYPE
  I                1               17
  II               2               30
  III              0               29
  IV               2               19

Clustering(35) Variable = CHRM2 MUTATION ANALYSIS
D35V1, survival
                 sevent
clus2              0  1
  CHRM2 MUTATED    2  0
  CHRM2 WILD-TYPE 69 14
  CHRM2 MUTATED CHRM2 WILD-TYPE 
              2              83 
  CHRM2 MUTATED CHRM2 WILD-TYPE 
              0              14 
$`CHRM2 MUTATED`
TCGA-D7-5578 TCGA-D7-6527 
        3.58         4.14 

$`CHRM2 WILD-TYPE`
TCGA-B7-5816 TCGA-B7-5818 TCGA-BR-6452 TCGA-BR-6455 TCGA-BR-6457 TCGA-BR-6458 
        5.62         0.10         0.95         1.41         1.35         1.35 
TCGA-BR-6564 TCGA-BR-6565 TCGA-BR-6566 TCGA-BR-6705 TCGA-BR-6706 TCGA-BR-6707 
        0.82         0.62         0.62         1.71         2.17         0.99 
TCGA-BR-6709 TCGA-BR-6710 TCGA-BR-6801 TCGA-BR-6802 TCGA-BR-6803 TCGA-BR-6852 
        1.22         0.66         1.12         0.76         0.66         0.26 
TCGA-CD-5798 TCGA-CD-5799 TCGA-CD-5800 TCGA-CD-5801 TCGA-CD-5802 TCGA-CD-5803 
        0.82         0.69         0.36         0.49         0.30         0.07 
TCGA-CD-5813 TCGA-CG-4300 TCGA-CG-4301 TCGA-CG-4304 TCGA-CG-4305 TCGA-CG-4306 
        0.39        20.02         3.02        27.02        15.95         1.02 
TCGA-CG-4436 TCGA-CG-4437 TCGA-CG-4438 TCGA-CG-4440 TCGA-CG-4441 TCGA-CG-4443 
       52.96         8.05        54.05         4.01        14.01        29.98 
TCGA-CG-4444 TCGA-CG-4449 TCGA-CG-4455 TCGA-CG-4460 TCGA-CG-4462 TCGA-CG-4465 
       47.05        19.07        12.03        21.99         1.02         8.98 
TCGA-CG-4466 TCGA-CG-4469 TCGA-CG-4472 TCGA-CG-4474 TCGA-CG-4477 TCGA-CG-5716 
       18.94         7.07        12.00         1.02         1.02         1.02 
TCGA-CG-5717 TCGA-CG-5718 TCGA-CG-5719 TCGA-CG-5720 TCGA-CG-5721 TCGA-CG-5722 
        6.94         1.02         1.02         0.99         5.98         0.95 
TCGA-CG-5723 TCGA-CG-5724 TCGA-CG-5725 TCGA-CG-5726 TCGA-CG-5727 TCGA-CG-5728 
       70.06        12.03        15.02        28.96        31.04        65.10 
TCGA-CG-5730 TCGA-CG-5732 TCGA-CG-5733 TCGA-CG-5734 TCGA-D7-5577 TCGA-D7-5579 
        4.01        55.04        21.07         7.99         8.65         4.54 
TCGA-D7-6518 TCGA-D7-6519 TCGA-D7-6520 TCGA-D7-6521 TCGA-D7-6522 TCGA-D7-6524 
        9.80        15.65         9.63         8.19         6.90         0.69 
TCGA-D7-6525 TCGA-D7-6526 TCGA-D7-6528 TCGA-D7-6815 TCGA-D7-6817 TCGA-D7-6818 
        5.95         6.61         1.68         3.65         4.70         4.04 
TCGA-D7-6820 TCGA-D7-6822 TCGA-EQ-5647 TCGA-F1-6177 TCGA-F1-6874 
        2.93         4.27         0.62         6.54         2.01 

  CHRM2 MUTATED CHRM2 WILD-TYPE 
           3.58            0.07 
  CHRM2 MUTATED CHRM2 WILD-TYPE 
           4.14           70.06 
  CHRM2 MUTATED CHRM2 WILD-TYPE 
           3.86            4.01 
[1] "3.6 - 4.1 (3.9)"  "0.1 - 70.1 (4.0)"
     TCGA-B7-5816      TCGA-B7-5818      TCGA-BR-6452      TCGA-BR-6455 
"CHRM2 WILD-TYPE" "CHRM2 WILD-TYPE" "CHRM2 WILD-TYPE" "CHRM2 WILD-TYPE" 
     TCGA-BR-6457      TCGA-BR-6458      TCGA-BR-6564      TCGA-BR-6565 
"CHRM2 WILD-TYPE" "CHRM2 WILD-TYPE" "CHRM2 WILD-TYPE" "CHRM2 WILD-TYPE" 
     TCGA-BR-6566      TCGA-BR-6705      TCGA-BR-6706      TCGA-BR-6707 
"CHRM2 WILD-TYPE" "CHRM2 WILD-TYPE" "CHRM2 WILD-TYPE" "CHRM2 WILD-TYPE" 
     TCGA-BR-6709      TCGA-BR-6710      TCGA-BR-6801      TCGA-BR-6802 
"CHRM2 WILD-TYPE" "CHRM2 WILD-TYPE" "CHRM2 WILD-TYPE" "CHRM2 WILD-TYPE" 
     TCGA-BR-6803      TCGA-BR-6852      TCGA-CD-5798      TCGA-CD-5799 
"CHRM2 WILD-TYPE" "CHRM2 WILD-TYPE" "CHRM2 WILD-TYPE" "CHRM2 WILD-TYPE" 
     TCGA-CD-5800      TCGA-CD-5801      TCGA-CD-5802      TCGA-CD-5803 
"CHRM2 WILD-TYPE" "CHRM2 WILD-TYPE" "CHRM2 WILD-TYPE" "CHRM2 WILD-TYPE" 
     TCGA-CD-5813      TCGA-CG-4300      TCGA-CG-4301      TCGA-CG-4304 
"CHRM2 WILD-TYPE" "CHRM2 WILD-TYPE" "CHRM2 WILD-TYPE" "CHRM2 WILD-TYPE" 
     TCGA-CG-4305      TCGA-CG-4306      TCGA-CG-4436      TCGA-CG-4437 
"CHRM2 WILD-TYPE" "CHRM2 WILD-TYPE" "CHRM2 WILD-TYPE" "CHRM2 WILD-TYPE" 
     TCGA-CG-4438      TCGA-CG-4440      TCGA-CG-4441      TCGA-CG-4443 
"CHRM2 WILD-TYPE" "CHRM2 WILD-TYPE" "CHRM2 WILD-TYPE" "CHRM2 WILD-TYPE" 
     TCGA-CG-4444      TCGA-CG-4449      TCGA-CG-4455      TCGA-CG-4460 
"CHRM2 WILD-TYPE" "CHRM2 WILD-TYPE" "CHRM2 WILD-TYPE" "CHRM2 WILD-TYPE" 
     TCGA-CG-4462      TCGA-CG-4465      TCGA-CG-4466      TCGA-CG-4469 
"CHRM2 WILD-TYPE" "CHRM2 WILD-TYPE" "CHRM2 WILD-TYPE" "CHRM2 WILD-TYPE" 
     TCGA-CG-4472      TCGA-CG-4474      TCGA-CG-4477      TCGA-CG-5716 
"CHRM2 WILD-TYPE" "CHRM2 WILD-TYPE" "CHRM2 WILD-TYPE" "CHRM2 WILD-TYPE" 
     TCGA-CG-5717      TCGA-CG-5718      TCGA-CG-5719      TCGA-CG-5720 
"CHRM2 WILD-TYPE" "CHRM2 WILD-TYPE" "CHRM2 WILD-TYPE" "CHRM2 WILD-TYPE" 
     TCGA-CG-5721      TCGA-CG-5722      TCGA-CG-5723      TCGA-CG-5724 
"CHRM2 WILD-TYPE" "CHRM2 WILD-TYPE" "CHRM2 WILD-TYPE" "CHRM2 WILD-TYPE" 
     TCGA-CG-5725      TCGA-CG-5726      TCGA-CG-5727      TCGA-CG-5728 
"CHRM2 WILD-TYPE" "CHRM2 WILD-TYPE" "CHRM2 WILD-TYPE" "CHRM2 WILD-TYPE" 
     TCGA-CG-5730      TCGA-CG-5732      TCGA-CG-5733      TCGA-CG-5734 
"CHRM2 WILD-TYPE" "CHRM2 WILD-TYPE" "CHRM2 WILD-TYPE" "CHRM2 WILD-TYPE" 
     TCGA-D7-5577      TCGA-D7-5578      TCGA-D7-5579      TCGA-D7-6518 
"CHRM2 WILD-TYPE"   "CHRM2 MUTATED" "CHRM2 WILD-TYPE" "CHRM2 WILD-TYPE" 
     TCGA-D7-6519      TCGA-D7-6520      TCGA-D7-6521      TCGA-D7-6522 
"CHRM2 WILD-TYPE" "CHRM2 WILD-TYPE" "CHRM2 WILD-TYPE" "CHRM2 WILD-TYPE" 
     TCGA-D7-6524      TCGA-D7-6525      TCGA-D7-6526      TCGA-D7-6527 
"CHRM2 WILD-TYPE" "CHRM2 WILD-TYPE" "CHRM2 WILD-TYPE"   "CHRM2 MUTATED" 
     TCGA-D7-6528      TCGA-D7-6815      TCGA-D7-6817      TCGA-D7-6818 
"CHRM2 WILD-TYPE" "CHRM2 WILD-TYPE" "CHRM2 WILD-TYPE" "CHRM2 WILD-TYPE" 
     TCGA-D7-6820      TCGA-D7-6822      TCGA-EQ-5647      TCGA-F1-6177 
"CHRM2 WILD-TYPE" "CHRM2 WILD-TYPE" "CHRM2 WILD-TYPE" "CHRM2 WILD-TYPE" 
     TCGA-F1-6874 
"CHRM2 WILD-TYPE" 
     TCGA-B7-5816      TCGA-B7-5818      TCGA-BR-6452      TCGA-BR-6455 
"CHRM2 WILD-TYPE" "CHRM2 WILD-TYPE" "CHRM2 WILD-TYPE" "CHRM2 WILD-TYPE" 
     TCGA-BR-6457      TCGA-BR-6458      TCGA-BR-6564      TCGA-BR-6565 
"CHRM2 WILD-TYPE" "CHRM2 WILD-TYPE" "CHRM2 WILD-TYPE" "CHRM2 WILD-TYPE" 
     TCGA-BR-6566      TCGA-BR-6705      TCGA-BR-6706      TCGA-BR-6707 
"CHRM2 WILD-TYPE" "CHRM2 WILD-TYPE" "CHRM2 WILD-TYPE" "CHRM2 WILD-TYPE" 
     TCGA-BR-6709      TCGA-BR-6710      TCGA-BR-6801      TCGA-BR-6802 
"CHRM2 WILD-TYPE" "CHRM2 WILD-TYPE" "CHRM2 WILD-TYPE" "CHRM2 WILD-TYPE" 
     TCGA-BR-6803      TCGA-BR-6852      TCGA-CD-5798      TCGA-CD-5799 
"CHRM2 WILD-TYPE" "CHRM2 WILD-TYPE" "CHRM2 WILD-TYPE" "CHRM2 WILD-TYPE" 
     TCGA-CD-5800      TCGA-CD-5801      TCGA-CD-5802      TCGA-CD-5803 
"CHRM2 WILD-TYPE" "CHRM2 WILD-TYPE" "CHRM2 WILD-TYPE" "CHRM2 WILD-TYPE" 
     TCGA-CD-5813      TCGA-CG-4300      TCGA-CG-4301      TCGA-CG-4304 
"CHRM2 WILD-TYPE" "CHRM2 WILD-TYPE" "CHRM2 WILD-TYPE" "CHRM2 WILD-TYPE" 
     TCGA-CG-4305      TCGA-CG-4306      TCGA-CG-4436      TCGA-CG-4437 
"CHRM2 WILD-TYPE" "CHRM2 WILD-TYPE" "CHRM2 WILD-TYPE" "CHRM2 WILD-TYPE" 
     TCGA-CG-4438      TCGA-CG-4440      TCGA-CG-4441      TCGA-CG-4443 
"CHRM2 WILD-TYPE" "CHRM2 WILD-TYPE" "CHRM2 WILD-TYPE" "CHRM2 WILD-TYPE" 
     TCGA-CG-4444      TCGA-CG-4449      TCGA-CG-4455      TCGA-CG-4460 
"CHRM2 WILD-TYPE" "CHRM2 WILD-TYPE" "CHRM2 WILD-TYPE" "CHRM2 WILD-TYPE" 
     TCGA-CG-4462      TCGA-CG-4465      TCGA-CG-4466      TCGA-CG-4469 
"CHRM2 WILD-TYPE" "CHRM2 WILD-TYPE" "CHRM2 WILD-TYPE" "CHRM2 WILD-TYPE" 
     TCGA-CG-4472      TCGA-CG-4474      TCGA-CG-4477      TCGA-CG-5716 
"CHRM2 WILD-TYPE" "CHRM2 WILD-TYPE" "CHRM2 WILD-TYPE" "CHRM2 WILD-TYPE" 
     TCGA-CG-5717      TCGA-CG-5718      TCGA-CG-5719      TCGA-CG-5720 
"CHRM2 WILD-TYPE" "CHRM2 WILD-TYPE" "CHRM2 WILD-TYPE" "CHRM2 WILD-TYPE" 
     TCGA-CG-5721      TCGA-CG-5722      TCGA-CG-5723      TCGA-CG-5724 
"CHRM2 WILD-TYPE" "CHRM2 WILD-TYPE" "CHRM2 WILD-TYPE" "CHRM2 WILD-TYPE" 
     TCGA-CG-5725      TCGA-CG-5726      TCGA-CG-5727      TCGA-CG-5728 
"CHRM2 WILD-TYPE" "CHRM2 WILD-TYPE" "CHRM2 WILD-TYPE" "CHRM2 WILD-TYPE" 
     TCGA-CG-5730      TCGA-CG-5732      TCGA-CG-5733      TCGA-CG-5734 
"CHRM2 WILD-TYPE" "CHRM2 WILD-TYPE" "CHRM2 WILD-TYPE" "CHRM2 WILD-TYPE" 
     TCGA-D7-5577      TCGA-D7-5578      TCGA-D7-5579      TCGA-D7-6518 
"CHRM2 WILD-TYPE"   "CHRM2 MUTATED" "CHRM2 WILD-TYPE" "CHRM2 WILD-TYPE" 
     TCGA-D7-6519      TCGA-D7-6520      TCGA-D7-6521      TCGA-D7-6522 
"CHRM2 WILD-TYPE" "CHRM2 WILD-TYPE" "CHRM2 WILD-TYPE" "CHRM2 WILD-TYPE" 
     TCGA-D7-6524      TCGA-D7-6525      TCGA-D7-6526      TCGA-D7-6527 
"CHRM2 WILD-TYPE" "CHRM2 WILD-TYPE" "CHRM2 WILD-TYPE"   "CHRM2 MUTATED" 
     TCGA-D7-6528      TCGA-D7-6815      TCGA-D7-6817      TCGA-D7-6818 
"CHRM2 WILD-TYPE" "CHRM2 WILD-TYPE" "CHRM2 WILD-TYPE" "CHRM2 WILD-TYPE" 
     TCGA-D7-6820      TCGA-D7-6822      TCGA-EQ-5647      TCGA-F1-6177 
"CHRM2 WILD-TYPE" "CHRM2 WILD-TYPE" "CHRM2 WILD-TYPE" "CHRM2 WILD-TYPE" 
     TCGA-F1-6874 
"CHRM2 WILD-TYPE" 
     TCGA-B7-5816      TCGA-B7-5818      TCGA-BR-6452      TCGA-BR-6455 
"CHRM2 WILD-TYPE" "CHRM2 WILD-TYPE" "CHRM2 WILD-TYPE" "CHRM2 WILD-TYPE" 
     TCGA-BR-6457      TCGA-BR-6458      TCGA-BR-6564      TCGA-BR-6565 
"CHRM2 WILD-TYPE" "CHRM2 WILD-TYPE" "CHRM2 WILD-TYPE" "CHRM2 WILD-TYPE" 
     TCGA-BR-6566      TCGA-BR-6705      TCGA-BR-6706      TCGA-BR-6707 
"CHRM2 WILD-TYPE" "CHRM2 WILD-TYPE" "CHRM2 WILD-TYPE" "CHRM2 WILD-TYPE" 
     TCGA-BR-6709      TCGA-BR-6710      TCGA-BR-6801      TCGA-BR-6802 
"CHRM2 WILD-TYPE" "CHRM2 WILD-TYPE" "CHRM2 WILD-TYPE" "CHRM2 WILD-TYPE" 
     TCGA-BR-6803      TCGA-BR-6852      TCGA-CD-5798      TCGA-CD-5799 
"CHRM2 WILD-TYPE" "CHRM2 WILD-TYPE" "CHRM2 WILD-TYPE" "CHRM2 WILD-TYPE" 
     TCGA-CD-5800      TCGA-CD-5801      TCGA-CD-5802      TCGA-CD-5803 
"CHRM2 WILD-TYPE" "CHRM2 WILD-TYPE" "CHRM2 WILD-TYPE" "CHRM2 WILD-TYPE" 
     TCGA-CD-5813      TCGA-CG-4300      TCGA-CG-4301      TCGA-CG-4304 
"CHRM2 WILD-TYPE" "CHRM2 WILD-TYPE" "CHRM2 WILD-TYPE" "CHRM2 WILD-TYPE" 
     TCGA-CG-4305      TCGA-CG-4306      TCGA-CG-4436      TCGA-CG-4437 
"CHRM2 WILD-TYPE" "CHRM2 WILD-TYPE" "CHRM2 WILD-TYPE" "CHRM2 WILD-TYPE" 
     TCGA-CG-4438      TCGA-CG-4440      TCGA-CG-4441      TCGA-CG-4443 
"CHRM2 WILD-TYPE" "CHRM2 WILD-TYPE" "CHRM2 WILD-TYPE" "CHRM2 WILD-TYPE" 
     TCGA-CG-4444      TCGA-CG-4449      TCGA-CG-4455      TCGA-CG-4460 
"CHRM2 WILD-TYPE" "CHRM2 WILD-TYPE" "CHRM2 WILD-TYPE" "CHRM2 WILD-TYPE" 
     TCGA-CG-4462      TCGA-CG-4465      TCGA-CG-4466      TCGA-CG-4469 
"CHRM2 WILD-TYPE" "CHRM2 WILD-TYPE" "CHRM2 WILD-TYPE" "CHRM2 WILD-TYPE" 
     TCGA-CG-4472      TCGA-CG-4474      TCGA-CG-4477      TCGA-CG-5716 
"CHRM2 WILD-TYPE" "CHRM2 WILD-TYPE" "CHRM2 WILD-TYPE" "CHRM2 WILD-TYPE" 
     TCGA-CG-5717      TCGA-CG-5718      TCGA-CG-5719      TCGA-CG-5720 
"CHRM2 WILD-TYPE" "CHRM2 WILD-TYPE" "CHRM2 WILD-TYPE" "CHRM2 WILD-TYPE" 
     TCGA-CG-5721      TCGA-CG-5722      TCGA-CG-5723      TCGA-CG-5724 
"CHRM2 WILD-TYPE" "CHRM2 WILD-TYPE" "CHRM2 WILD-TYPE" "CHRM2 WILD-TYPE" 
     TCGA-CG-5725      TCGA-CG-5726      TCGA-CG-5727      TCGA-CG-5728 
"CHRM2 WILD-TYPE" "CHRM2 WILD-TYPE" "CHRM2 WILD-TYPE" "CHRM2 WILD-TYPE" 
     TCGA-CG-5730      TCGA-CG-5732      TCGA-CG-5733      TCGA-CG-5734 
"CHRM2 WILD-TYPE" "CHRM2 WILD-TYPE" "CHRM2 WILD-TYPE" "CHRM2 WILD-TYPE" 
     TCGA-D7-5577      TCGA-D7-5578      TCGA-D7-5579      TCGA-D7-6518 
"CHRM2 WILD-TYPE"   "CHRM2 MUTATED" "CHRM2 WILD-TYPE" "CHRM2 WILD-TYPE" 
     TCGA-D7-6519      TCGA-D7-6520      TCGA-D7-6521      TCGA-D7-6522 
"CHRM2 WILD-TYPE" "CHRM2 WILD-TYPE" "CHRM2 WILD-TYPE" "CHRM2 WILD-TYPE" 
     TCGA-D7-6524      TCGA-D7-6525      TCGA-D7-6526      TCGA-D7-6527 
"CHRM2 WILD-TYPE" "CHRM2 WILD-TYPE" "CHRM2 WILD-TYPE"   "CHRM2 MUTATED" 
     TCGA-D7-6528      TCGA-D7-6815      TCGA-D7-6817      TCGA-D7-6818 
"CHRM2 WILD-TYPE" "CHRM2 WILD-TYPE" "CHRM2 WILD-TYPE" "CHRM2 WILD-TYPE" 
     TCGA-D7-6820      TCGA-D7-6822      TCGA-EQ-5647      TCGA-F1-6177 
"CHRM2 WILD-TYPE" "CHRM2 WILD-TYPE" "CHRM2 WILD-TYPE" "CHRM2 WILD-TYPE" 
     TCGA-F1-6874 
"CHRM2 WILD-TYPE" 
[1] "Remove cluster labels:" "CHRM2 MUTATED"         
clus
  CHRM2 MUTATED CHRM2 WILD-TYPE 
              2              83 
     TCGA-B7-5816      TCGA-B7-5818      TCGA-BR-6452      TCGA-BR-6455 
"CHRM2 WILD-TYPE" "CHRM2 WILD-TYPE" "CHRM2 WILD-TYPE" "CHRM2 WILD-TYPE" 
     TCGA-BR-6457      TCGA-BR-6458      TCGA-BR-6564      TCGA-BR-6565 
"CHRM2 WILD-TYPE" "CHRM2 WILD-TYPE" "CHRM2 WILD-TYPE" "CHRM2 WILD-TYPE" 
     TCGA-BR-6566      TCGA-BR-6705      TCGA-BR-6706      TCGA-BR-6707 
"CHRM2 WILD-TYPE" "CHRM2 WILD-TYPE" "CHRM2 WILD-TYPE" "CHRM2 WILD-TYPE" 
     TCGA-BR-6709      TCGA-BR-6710      TCGA-BR-6801      TCGA-BR-6802 
"CHRM2 WILD-TYPE" "CHRM2 WILD-TYPE" "CHRM2 WILD-TYPE" "CHRM2 WILD-TYPE" 
     TCGA-BR-6803      TCGA-BR-6852      TCGA-CD-5798      TCGA-CD-5799 
"CHRM2 WILD-TYPE" "CHRM2 WILD-TYPE" "CHRM2 WILD-TYPE" "CHRM2 WILD-TYPE" 
     TCGA-CD-5800      TCGA-CD-5801      TCGA-CD-5802      TCGA-CD-5803 
"CHRM2 WILD-TYPE" "CHRM2 WILD-TYPE" "CHRM2 WILD-TYPE" "CHRM2 WILD-TYPE" 
     TCGA-CD-5813      TCGA-CG-4300      TCGA-CG-4301      TCGA-CG-4304 
"CHRM2 WILD-TYPE" "CHRM2 WILD-TYPE" "CHRM2 WILD-TYPE" "CHRM2 WILD-TYPE" 
     TCGA-CG-4305      TCGA-CG-4306      TCGA-CG-4436      TCGA-CG-4437 
"CHRM2 WILD-TYPE" "CHRM2 WILD-TYPE" "CHRM2 WILD-TYPE" "CHRM2 WILD-TYPE" 
     TCGA-CG-4438      TCGA-CG-4440      TCGA-CG-4441      TCGA-CG-4443 
"CHRM2 WILD-TYPE" "CHRM2 WILD-TYPE" "CHRM2 WILD-TYPE" "CHRM2 WILD-TYPE" 
     TCGA-CG-4444      TCGA-CG-4449      TCGA-CG-4455      TCGA-CG-4460 
"CHRM2 WILD-TYPE" "CHRM2 WILD-TYPE" "CHRM2 WILD-TYPE" "CHRM2 WILD-TYPE" 
     TCGA-CG-4462      TCGA-CG-4465      TCGA-CG-4466      TCGA-CG-4469 
"CHRM2 WILD-TYPE" "CHRM2 WILD-TYPE" "CHRM2 WILD-TYPE" "CHRM2 WILD-TYPE" 
     TCGA-CG-4472      TCGA-CG-4474      TCGA-CG-4477      TCGA-CG-5716 
"CHRM2 WILD-TYPE" "CHRM2 WILD-TYPE" "CHRM2 WILD-TYPE" "CHRM2 WILD-TYPE" 
     TCGA-CG-5717      TCGA-CG-5718      TCGA-CG-5719      TCGA-CG-5720 
"CHRM2 WILD-TYPE" "CHRM2 WILD-TYPE" "CHRM2 WILD-TYPE" "CHRM2 WILD-TYPE" 
     TCGA-CG-5721      TCGA-CG-5722      TCGA-CG-5723      TCGA-CG-5724 
"CHRM2 WILD-TYPE" "CHRM2 WILD-TYPE" "CHRM2 WILD-TYPE" "CHRM2 WILD-TYPE" 
     TCGA-CG-5725      TCGA-CG-5726      TCGA-CG-5727      TCGA-CG-5728 
"CHRM2 WILD-TYPE" "CHRM2 WILD-TYPE" "CHRM2 WILD-TYPE" "CHRM2 WILD-TYPE" 
     TCGA-CG-5730      TCGA-CG-5732      TCGA-CG-5733      TCGA-CG-5734 
"CHRM2 WILD-TYPE" "CHRM2 WILD-TYPE" "CHRM2 WILD-TYPE" "CHRM2 WILD-TYPE" 
     TCGA-D7-5577      TCGA-D7-5579      TCGA-D7-6518      TCGA-D7-6519 
"CHRM2 WILD-TYPE" "CHRM2 WILD-TYPE" "CHRM2 WILD-TYPE" "CHRM2 WILD-TYPE" 
     TCGA-D7-6520      TCGA-D7-6521      TCGA-D7-6522      TCGA-D7-6524 
"CHRM2 WILD-TYPE" "CHRM2 WILD-TYPE" "CHRM2 WILD-TYPE" "CHRM2 WILD-TYPE" 
     TCGA-D7-6525      TCGA-D7-6526      TCGA-D7-6528      TCGA-D7-6815 
"CHRM2 WILD-TYPE" "CHRM2 WILD-TYPE" "CHRM2 WILD-TYPE" "CHRM2 WILD-TYPE" 
     TCGA-D7-6817      TCGA-D7-6818      TCGA-D7-6820      TCGA-D7-6822 
"CHRM2 WILD-TYPE" "CHRM2 WILD-TYPE" "CHRM2 WILD-TYPE" "CHRM2 WILD-TYPE" 
     TCGA-EQ-5647      TCGA-F1-6177      TCGA-F1-6874 
"CHRM2 WILD-TYPE" "CHRM2 WILD-TYPE" "CHRM2 WILD-TYPE" 
D35V2, continuous
D35V3, binary
[1] "tbl2"
                 cls
clus              [,1] [,2]
  CHRM2 MUTATED      1    5
  CHRM2 WILD-TYPE   45   65
        clus
vv       CHRM2 MUTATED CHRM2 WILD-TYPE
  FEMALE             1              45
  MALE               5              65
D35V4, multiclass
D35V5, multiclass
    clus
vv   CHRM2 MUTATED CHRM2 WILD-TYPE
  T1             0               4
  T2             4              42
  T3             1              40
  T4             0              15
D35V6, multiclass
    clus
vv   CHRM2 MUTATED CHRM2 WILD-TYPE
  N0             1              34
  N1             2              37
  N2             1              18
  N3             0              12
D35V7, multiclass
    clus
vv   CHRM2 MUTATED CHRM2 WILD-TYPE
  M0             6              93
  M1             0              13
  MX             0               4
D35V8, multiclass
     clus
vv    CHRM2 MUTATED CHRM2 WILD-TYPE
  I               1              17
  II              3              29
  III             0              29
  IV              0              21

Clustering(36) Variable = KIAA0748 MUTATION ANALYSIS
D36V1, survival
                    sevent
clus2                 0  1
  KIAA0748 MUTATED    4  0
  KIAA0748 WILD-TYPE 67 14
  KIAA0748 MUTATED KIAA0748 WILD-TYPE 
                 4                 81 
  KIAA0748 MUTATED KIAA0748 WILD-TYPE 
                 0                 14 
$`KIAA0748 MUTATED`
TCGA-BR-6458 TCGA-BR-6852 TCGA-CG-4437 TCGA-CG-5732 
        1.35         0.26         8.05        55.04 

$`KIAA0748 WILD-TYPE`
TCGA-B7-5816 TCGA-B7-5818 TCGA-BR-6452 TCGA-BR-6455 TCGA-BR-6457 TCGA-BR-6564 
        5.62         0.10         0.95         1.41         1.35         0.82 
TCGA-BR-6565 TCGA-BR-6566 TCGA-BR-6705 TCGA-BR-6706 TCGA-BR-6707 TCGA-BR-6709 
        0.62         0.62         1.71         2.17         0.99         1.22 
TCGA-BR-6710 TCGA-BR-6801 TCGA-BR-6802 TCGA-BR-6803 TCGA-CD-5798 TCGA-CD-5799 
        0.66         1.12         0.76         0.66         0.82         0.69 
TCGA-CD-5800 TCGA-CD-5801 TCGA-CD-5802 TCGA-CD-5803 TCGA-CD-5813 TCGA-CG-4300 
        0.36         0.49         0.30         0.07         0.39        20.02 
TCGA-CG-4301 TCGA-CG-4304 TCGA-CG-4305 TCGA-CG-4306 TCGA-CG-4436 TCGA-CG-4438 
        3.02        27.02        15.95         1.02        52.96        54.05 
TCGA-CG-4440 TCGA-CG-4441 TCGA-CG-4443 TCGA-CG-4444 TCGA-CG-4449 TCGA-CG-4455 
        4.01        14.01        29.98        47.05        19.07        12.03 
TCGA-CG-4460 TCGA-CG-4462 TCGA-CG-4465 TCGA-CG-4466 TCGA-CG-4469 TCGA-CG-4472 
       21.99         1.02         8.98        18.94         7.07        12.00 
TCGA-CG-4474 TCGA-CG-4477 TCGA-CG-5716 TCGA-CG-5717 TCGA-CG-5718 TCGA-CG-5719 
        1.02         1.02         1.02         6.94         1.02         1.02 
TCGA-CG-5720 TCGA-CG-5721 TCGA-CG-5722 TCGA-CG-5723 TCGA-CG-5724 TCGA-CG-5725 
        0.99         5.98         0.95        70.06        12.03        15.02 
TCGA-CG-5726 TCGA-CG-5727 TCGA-CG-5728 TCGA-CG-5730 TCGA-CG-5733 TCGA-CG-5734 
       28.96        31.04        65.10         4.01        21.07         7.99 
TCGA-D7-5577 TCGA-D7-5578 TCGA-D7-5579 TCGA-D7-6518 TCGA-D7-6519 TCGA-D7-6520 
        8.65         3.58         4.54         9.80        15.65         9.63 
TCGA-D7-6521 TCGA-D7-6522 TCGA-D7-6524 TCGA-D7-6525 TCGA-D7-6526 TCGA-D7-6527 
        8.19         6.90         0.69         5.95         6.61         4.14 
TCGA-D7-6528 TCGA-D7-6815 TCGA-D7-6817 TCGA-D7-6818 TCGA-D7-6820 TCGA-D7-6822 
        1.68         3.65         4.70         4.04         2.93         4.27 
TCGA-EQ-5647 TCGA-F1-6177 TCGA-F1-6874 
        0.62         6.54         2.01 

  KIAA0748 MUTATED KIAA0748 WILD-TYPE 
              0.26               0.07 
  KIAA0748 MUTATED KIAA0748 WILD-TYPE 
             55.04              70.06 
  KIAA0748 MUTATED KIAA0748 WILD-TYPE 
              4.70               4.01 
[1] "0.3 - 55.0 (4.7)" "0.1 - 70.1 (4.0)"
        TCGA-B7-5816         TCGA-B7-5818         TCGA-BR-6452 
"KIAA0748 WILD-TYPE" "KIAA0748 WILD-TYPE" "KIAA0748 WILD-TYPE" 
        TCGA-BR-6455         TCGA-BR-6457         TCGA-BR-6458 
"KIAA0748 WILD-TYPE" "KIAA0748 WILD-TYPE"   "KIAA0748 MUTATED" 
        TCGA-BR-6564         TCGA-BR-6565         TCGA-BR-6566 
"KIAA0748 WILD-TYPE" "KIAA0748 WILD-TYPE" "KIAA0748 WILD-TYPE" 
        TCGA-BR-6705         TCGA-BR-6706         TCGA-BR-6707 
"KIAA0748 WILD-TYPE" "KIAA0748 WILD-TYPE" "KIAA0748 WILD-TYPE" 
        TCGA-BR-6709         TCGA-BR-6710         TCGA-BR-6801 
"KIAA0748 WILD-TYPE" "KIAA0748 WILD-TYPE" "KIAA0748 WILD-TYPE" 
        TCGA-BR-6802         TCGA-BR-6803         TCGA-BR-6852 
"KIAA0748 WILD-TYPE" "KIAA0748 WILD-TYPE"   "KIAA0748 MUTATED" 
        TCGA-CD-5798         TCGA-CD-5799         TCGA-CD-5800 
"KIAA0748 WILD-TYPE" "KIAA0748 WILD-TYPE" "KIAA0748 WILD-TYPE" 
        TCGA-CD-5801         TCGA-CD-5802         TCGA-CD-5803 
"KIAA0748 WILD-TYPE" "KIAA0748 WILD-TYPE" "KIAA0748 WILD-TYPE" 
        TCGA-CD-5813         TCGA-CG-4300         TCGA-CG-4301 
"KIAA0748 WILD-TYPE" "KIAA0748 WILD-TYPE" "KIAA0748 WILD-TYPE" 
        TCGA-CG-4304         TCGA-CG-4305         TCGA-CG-4306 
"KIAA0748 WILD-TYPE" "KIAA0748 WILD-TYPE" "KIAA0748 WILD-TYPE" 
        TCGA-CG-4436         TCGA-CG-4437         TCGA-CG-4438 
"KIAA0748 WILD-TYPE"   "KIAA0748 MUTATED" "KIAA0748 WILD-TYPE" 
        TCGA-CG-4440         TCGA-CG-4441         TCGA-CG-4443 
"KIAA0748 WILD-TYPE" "KIAA0748 WILD-TYPE" "KIAA0748 WILD-TYPE" 
        TCGA-CG-4444         TCGA-CG-4449         TCGA-CG-4455 
"KIAA0748 WILD-TYPE" "KIAA0748 WILD-TYPE" "KIAA0748 WILD-TYPE" 
        TCGA-CG-4460         TCGA-CG-4462         TCGA-CG-4465 
"KIAA0748 WILD-TYPE" "KIAA0748 WILD-TYPE" "KIAA0748 WILD-TYPE" 
        TCGA-CG-4466         TCGA-CG-4469         TCGA-CG-4472 
"KIAA0748 WILD-TYPE" "KIAA0748 WILD-TYPE" "KIAA0748 WILD-TYPE" 
        TCGA-CG-4474         TCGA-CG-4477         TCGA-CG-5716 
"KIAA0748 WILD-TYPE" "KIAA0748 WILD-TYPE" "KIAA0748 WILD-TYPE" 
        TCGA-CG-5717         TCGA-CG-5718         TCGA-CG-5719 
"KIAA0748 WILD-TYPE" "KIAA0748 WILD-TYPE" "KIAA0748 WILD-TYPE" 
        TCGA-CG-5720         TCGA-CG-5721         TCGA-CG-5722 
"KIAA0748 WILD-TYPE" "KIAA0748 WILD-TYPE" "KIAA0748 WILD-TYPE" 
        TCGA-CG-5723         TCGA-CG-5724         TCGA-CG-5725 
"KIAA0748 WILD-TYPE" "KIAA0748 WILD-TYPE" "KIAA0748 WILD-TYPE" 
        TCGA-CG-5726         TCGA-CG-5727         TCGA-CG-5728 
"KIAA0748 WILD-TYPE" "KIAA0748 WILD-TYPE" "KIAA0748 WILD-TYPE" 
        TCGA-CG-5730         TCGA-CG-5732         TCGA-CG-5733 
"KIAA0748 WILD-TYPE"   "KIAA0748 MUTATED" "KIAA0748 WILD-TYPE" 
        TCGA-CG-5734         TCGA-D7-5577         TCGA-D7-5578 
"KIAA0748 WILD-TYPE" "KIAA0748 WILD-TYPE" "KIAA0748 WILD-TYPE" 
        TCGA-D7-5579         TCGA-D7-6518         TCGA-D7-6519 
"KIAA0748 WILD-TYPE" "KIAA0748 WILD-TYPE" "KIAA0748 WILD-TYPE" 
        TCGA-D7-6520         TCGA-D7-6521         TCGA-D7-6522 
"KIAA0748 WILD-TYPE" "KIAA0748 WILD-TYPE" "KIAA0748 WILD-TYPE" 
        TCGA-D7-6524         TCGA-D7-6525         TCGA-D7-6526 
"KIAA0748 WILD-TYPE" "KIAA0748 WILD-TYPE" "KIAA0748 WILD-TYPE" 
        TCGA-D7-6527         TCGA-D7-6528         TCGA-D7-6815 
"KIAA0748 WILD-TYPE" "KIAA0748 WILD-TYPE" "KIAA0748 WILD-TYPE" 
        TCGA-D7-6817         TCGA-D7-6818         TCGA-D7-6820 
"KIAA0748 WILD-TYPE" "KIAA0748 WILD-TYPE" "KIAA0748 WILD-TYPE" 
        TCGA-D7-6822         TCGA-EQ-5647         TCGA-F1-6177 
"KIAA0748 WILD-TYPE" "KIAA0748 WILD-TYPE" "KIAA0748 WILD-TYPE" 
        TCGA-F1-6874 
"KIAA0748 WILD-TYPE" 
        TCGA-B7-5816         TCGA-B7-5818         TCGA-BR-6452 
"KIAA0748 WILD-TYPE" "KIAA0748 WILD-TYPE" "KIAA0748 WILD-TYPE" 
        TCGA-BR-6455         TCGA-BR-6457         TCGA-BR-6458 
"KIAA0748 WILD-TYPE" "KIAA0748 WILD-TYPE"   "KIAA0748 MUTATED" 
        TCGA-BR-6564         TCGA-BR-6565         TCGA-BR-6566 
"KIAA0748 WILD-TYPE" "KIAA0748 WILD-TYPE" "KIAA0748 WILD-TYPE" 
        TCGA-BR-6705         TCGA-BR-6706         TCGA-BR-6707 
"KIAA0748 WILD-TYPE" "KIAA0748 WILD-TYPE" "KIAA0748 WILD-TYPE" 
        TCGA-BR-6709         TCGA-BR-6710         TCGA-BR-6801 
"KIAA0748 WILD-TYPE" "KIAA0748 WILD-TYPE" "KIAA0748 WILD-TYPE" 
        TCGA-BR-6802         TCGA-BR-6803         TCGA-BR-6852 
"KIAA0748 WILD-TYPE" "KIAA0748 WILD-TYPE"   "KIAA0748 MUTATED" 
        TCGA-CD-5798         TCGA-CD-5799         TCGA-CD-5800 
"KIAA0748 WILD-TYPE" "KIAA0748 WILD-TYPE" "KIAA0748 WILD-TYPE" 
        TCGA-CD-5801         TCGA-CD-5802         TCGA-CD-5803 
"KIAA0748 WILD-TYPE" "KIAA0748 WILD-TYPE" "KIAA0748 WILD-TYPE" 
        TCGA-CD-5813         TCGA-CG-4300         TCGA-CG-4301 
"KIAA0748 WILD-TYPE" "KIAA0748 WILD-TYPE" "KIAA0748 WILD-TYPE" 
        TCGA-CG-4304         TCGA-CG-4305         TCGA-CG-4306 
"KIAA0748 WILD-TYPE" "KIAA0748 WILD-TYPE" "KIAA0748 WILD-TYPE" 
        TCGA-CG-4436         TCGA-CG-4437         TCGA-CG-4438 
"KIAA0748 WILD-TYPE"   "KIAA0748 MUTATED" "KIAA0748 WILD-TYPE" 
        TCGA-CG-4440         TCGA-CG-4441         TCGA-CG-4443 
"KIAA0748 WILD-TYPE" "KIAA0748 WILD-TYPE" "KIAA0748 WILD-TYPE" 
        TCGA-CG-4444         TCGA-CG-4449         TCGA-CG-4455 
"KIAA0748 WILD-TYPE" "KIAA0748 WILD-TYPE" "KIAA0748 WILD-TYPE" 
        TCGA-CG-4460         TCGA-CG-4462         TCGA-CG-4465 
"KIAA0748 WILD-TYPE" "KIAA0748 WILD-TYPE" "KIAA0748 WILD-TYPE" 
        TCGA-CG-4466         TCGA-CG-4469         TCGA-CG-4472 
"KIAA0748 WILD-TYPE" "KIAA0748 WILD-TYPE" "KIAA0748 WILD-TYPE" 
        TCGA-CG-4474         TCGA-CG-4477         TCGA-CG-5716 
"KIAA0748 WILD-TYPE" "KIAA0748 WILD-TYPE" "KIAA0748 WILD-TYPE" 
        TCGA-CG-5717         TCGA-CG-5718         TCGA-CG-5719 
"KIAA0748 WILD-TYPE" "KIAA0748 WILD-TYPE" "KIAA0748 WILD-TYPE" 
        TCGA-CG-5720         TCGA-CG-5721         TCGA-CG-5722 
"KIAA0748 WILD-TYPE" "KIAA0748 WILD-TYPE" "KIAA0748 WILD-TYPE" 
        TCGA-CG-5723         TCGA-CG-5724         TCGA-CG-5725 
"KIAA0748 WILD-TYPE" "KIAA0748 WILD-TYPE" "KIAA0748 WILD-TYPE" 
        TCGA-CG-5726         TCGA-CG-5727         TCGA-CG-5728 
"KIAA0748 WILD-TYPE" "KIAA0748 WILD-TYPE" "KIAA0748 WILD-TYPE" 
        TCGA-CG-5730         TCGA-CG-5732         TCGA-CG-5733 
"KIAA0748 WILD-TYPE"   "KIAA0748 MUTATED" "KIAA0748 WILD-TYPE" 
        TCGA-CG-5734         TCGA-D7-5577         TCGA-D7-5578 
"KIAA0748 WILD-TYPE" "KIAA0748 WILD-TYPE" "KIAA0748 WILD-TYPE" 
        TCGA-D7-5579         TCGA-D7-6518         TCGA-D7-6519 
"KIAA0748 WILD-TYPE" "KIAA0748 WILD-TYPE" "KIAA0748 WILD-TYPE" 
        TCGA-D7-6520         TCGA-D7-6521         TCGA-D7-6522 
"KIAA0748 WILD-TYPE" "KIAA0748 WILD-TYPE" "KIAA0748 WILD-TYPE" 
        TCGA-D7-6524         TCGA-D7-6525         TCGA-D7-6526 
"KIAA0748 WILD-TYPE" "KIAA0748 WILD-TYPE" "KIAA0748 WILD-TYPE" 
        TCGA-D7-6527         TCGA-D7-6528         TCGA-D7-6815 
"KIAA0748 WILD-TYPE" "KIAA0748 WILD-TYPE" "KIAA0748 WILD-TYPE" 
        TCGA-D7-6817         TCGA-D7-6818         TCGA-D7-6820 
"KIAA0748 WILD-TYPE" "KIAA0748 WILD-TYPE" "KIAA0748 WILD-TYPE" 
        TCGA-D7-6822         TCGA-EQ-5647         TCGA-F1-6177 
"KIAA0748 WILD-TYPE" "KIAA0748 WILD-TYPE" "KIAA0748 WILD-TYPE" 
        TCGA-F1-6874 
"KIAA0748 WILD-TYPE" 
        TCGA-B7-5816         TCGA-B7-5818         TCGA-BR-6452 
"KIAA0748 WILD-TYPE" "KIAA0748 WILD-TYPE" "KIAA0748 WILD-TYPE" 
        TCGA-BR-6455         TCGA-BR-6457         TCGA-BR-6458 
"KIAA0748 WILD-TYPE" "KIAA0748 WILD-TYPE"   "KIAA0748 MUTATED" 
        TCGA-BR-6564         TCGA-BR-6565         TCGA-BR-6566 
"KIAA0748 WILD-TYPE" "KIAA0748 WILD-TYPE" "KIAA0748 WILD-TYPE" 
        TCGA-BR-6705         TCGA-BR-6706         TCGA-BR-6707 
"KIAA0748 WILD-TYPE" "KIAA0748 WILD-TYPE" "KIAA0748 WILD-TYPE" 
        TCGA-BR-6709         TCGA-BR-6710         TCGA-BR-6801 
"KIAA0748 WILD-TYPE" "KIAA0748 WILD-TYPE" "KIAA0748 WILD-TYPE" 
        TCGA-BR-6802         TCGA-BR-6803         TCGA-BR-6852 
"KIAA0748 WILD-TYPE" "KIAA0748 WILD-TYPE"   "KIAA0748 MUTATED" 
        TCGA-CD-5798         TCGA-CD-5799         TCGA-CD-5800 
"KIAA0748 WILD-TYPE" "KIAA0748 WILD-TYPE" "KIAA0748 WILD-TYPE" 
        TCGA-CD-5801         TCGA-CD-5802         TCGA-CD-5803 
"KIAA0748 WILD-TYPE" "KIAA0748 WILD-TYPE" "KIAA0748 WILD-TYPE" 
        TCGA-CD-5813         TCGA-CG-4300         TCGA-CG-4301 
"KIAA0748 WILD-TYPE" "KIAA0748 WILD-TYPE" "KIAA0748 WILD-TYPE" 
        TCGA-CG-4304         TCGA-CG-4305         TCGA-CG-4306 
"KIAA0748 WILD-TYPE" "KIAA0748 WILD-TYPE" "KIAA0748 WILD-TYPE" 
        TCGA-CG-4436         TCGA-CG-4437         TCGA-CG-4438 
"KIAA0748 WILD-TYPE"   "KIAA0748 MUTATED" "KIAA0748 WILD-TYPE" 
        TCGA-CG-4440         TCGA-CG-4441         TCGA-CG-4443 
"KIAA0748 WILD-TYPE" "KIAA0748 WILD-TYPE" "KIAA0748 WILD-TYPE" 
        TCGA-CG-4444         TCGA-CG-4449         TCGA-CG-4455 
"KIAA0748 WILD-TYPE" "KIAA0748 WILD-TYPE" "KIAA0748 WILD-TYPE" 
        TCGA-CG-4460         TCGA-CG-4462         TCGA-CG-4465 
"KIAA0748 WILD-TYPE" "KIAA0748 WILD-TYPE" "KIAA0748 WILD-TYPE" 
        TCGA-CG-4466         TCGA-CG-4469         TCGA-CG-4472 
"KIAA0748 WILD-TYPE" "KIAA0748 WILD-TYPE" "KIAA0748 WILD-TYPE" 
        TCGA-CG-4474         TCGA-CG-4477         TCGA-CG-5716 
"KIAA0748 WILD-TYPE" "KIAA0748 WILD-TYPE" "KIAA0748 WILD-TYPE" 
        TCGA-CG-5717         TCGA-CG-5718         TCGA-CG-5719 
"KIAA0748 WILD-TYPE" "KIAA0748 WILD-TYPE" "KIAA0748 WILD-TYPE" 
        TCGA-CG-5720         TCGA-CG-5721         TCGA-CG-5722 
"KIAA0748 WILD-TYPE" "KIAA0748 WILD-TYPE" "KIAA0748 WILD-TYPE" 
        TCGA-CG-5723         TCGA-CG-5724         TCGA-CG-5725 
"KIAA0748 WILD-TYPE" "KIAA0748 WILD-TYPE" "KIAA0748 WILD-TYPE" 
        TCGA-CG-5726         TCGA-CG-5727         TCGA-CG-5728 
"KIAA0748 WILD-TYPE" "KIAA0748 WILD-TYPE" "KIAA0748 WILD-TYPE" 
        TCGA-CG-5730         TCGA-CG-5732         TCGA-CG-5733 
"KIAA0748 WILD-TYPE"   "KIAA0748 MUTATED" "KIAA0748 WILD-TYPE" 
        TCGA-CG-5734         TCGA-D7-5577         TCGA-D7-5578 
"KIAA0748 WILD-TYPE" "KIAA0748 WILD-TYPE" "KIAA0748 WILD-TYPE" 
        TCGA-D7-5579         TCGA-D7-6518         TCGA-D7-6519 
"KIAA0748 WILD-TYPE" "KIAA0748 WILD-TYPE" "KIAA0748 WILD-TYPE" 
        TCGA-D7-6520         TCGA-D7-6521         TCGA-D7-6522 
"KIAA0748 WILD-TYPE" "KIAA0748 WILD-TYPE" "KIAA0748 WILD-TYPE" 
        TCGA-D7-6524         TCGA-D7-6525         TCGA-D7-6526 
"KIAA0748 WILD-TYPE" "KIAA0748 WILD-TYPE" "KIAA0748 WILD-TYPE" 
        TCGA-D7-6527         TCGA-D7-6528         TCGA-D7-6815 
"KIAA0748 WILD-TYPE" "KIAA0748 WILD-TYPE" "KIAA0748 WILD-TYPE" 
        TCGA-D7-6817         TCGA-D7-6818         TCGA-D7-6820 
"KIAA0748 WILD-TYPE" "KIAA0748 WILD-TYPE" "KIAA0748 WILD-TYPE" 
        TCGA-D7-6822         TCGA-EQ-5647         TCGA-F1-6177 
"KIAA0748 WILD-TYPE" "KIAA0748 WILD-TYPE" "KIAA0748 WILD-TYPE" 
        TCGA-F1-6874 
"KIAA0748 WILD-TYPE" 
[1] "hr="     "7.4e+07"
D36V2, continuous
D36V3, binary
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  KIAA0748 MUTATED      3    4
  KIAA0748 WILD-TYPE   43   66
        clus
vv       KIAA0748 MUTATED KIAA0748 WILD-TYPE
  FEMALE                3                 43
  MALE                  4                 66
D36V4, multiclass
D36V5, multiclass
    clus
vv   KIAA0748 MUTATED KIAA0748 WILD-TYPE
  T1                0                  4
  T2                4                 42
  T3                2                 39
  T4                0                 15
D36V6, multiclass
    clus
vv   KIAA0748 MUTATED KIAA0748 WILD-TYPE
  N0                2                 33
  N1                4                 35
  N2                0                 19
  N3                1                 11
D36V7, multiclass
    clus
vv   KIAA0748 MUTATED KIAA0748 WILD-TYPE
  M0                7                 92
  M1                0                 13
  MX                0                  4
D36V8, multiclass
     clus
vv    KIAA0748 MUTATED KIAA0748 WILD-TYPE
  I                  1                 17
  II                 4                 28
  III                0                 29
  IV                 1                 20

Clustering(37) Variable = FMOD MUTATION ANALYSIS
D37V1, survival
                sevent
clus2             0  1
  FMOD MUTATED    2  1
  FMOD WILD-TYPE 69 13
  FMOD MUTATED FMOD WILD-TYPE 
             3             82 
  FMOD MUTATED FMOD WILD-TYPE 
             1             13 
$`FMOD MUTATED`
TCGA-CD-5801 TCGA-CG-4305 TCGA-CG-4460 
        0.49        15.95        21.99 

$`FMOD WILD-TYPE`
TCGA-B7-5816 TCGA-B7-5818 TCGA-BR-6452 TCGA-BR-6455 TCGA-BR-6457 TCGA-BR-6458 
        5.62         0.10         0.95         1.41         1.35         1.35 
TCGA-BR-6564 TCGA-BR-6565 TCGA-BR-6566 TCGA-BR-6705 TCGA-BR-6706 TCGA-BR-6707 
        0.82         0.62         0.62         1.71         2.17         0.99 
TCGA-BR-6709 TCGA-BR-6710 TCGA-BR-6801 TCGA-BR-6802 TCGA-BR-6803 TCGA-BR-6852 
        1.22         0.66         1.12         0.76         0.66         0.26 
TCGA-CD-5798 TCGA-CD-5799 TCGA-CD-5800 TCGA-CD-5802 TCGA-CD-5803 TCGA-CD-5813 
        0.82         0.69         0.36         0.30         0.07         0.39 
TCGA-CG-4300 TCGA-CG-4301 TCGA-CG-4304 TCGA-CG-4306 TCGA-CG-4436 TCGA-CG-4437 
       20.02         3.02        27.02         1.02        52.96         8.05 
TCGA-CG-4438 TCGA-CG-4440 TCGA-CG-4441 TCGA-CG-4443 TCGA-CG-4444 TCGA-CG-4449 
       54.05         4.01        14.01        29.98        47.05        19.07 
TCGA-CG-4455 TCGA-CG-4462 TCGA-CG-4465 TCGA-CG-4466 TCGA-CG-4469 TCGA-CG-4472 
       12.03         1.02         8.98        18.94         7.07        12.00 
TCGA-CG-4474 TCGA-CG-4477 TCGA-CG-5716 TCGA-CG-5717 TCGA-CG-5718 TCGA-CG-5719 
        1.02         1.02         1.02         6.94         1.02         1.02 
TCGA-CG-5720 TCGA-CG-5721 TCGA-CG-5722 TCGA-CG-5723 TCGA-CG-5724 TCGA-CG-5725 
        0.99         5.98         0.95        70.06        12.03        15.02 
TCGA-CG-5726 TCGA-CG-5727 TCGA-CG-5728 TCGA-CG-5730 TCGA-CG-5732 TCGA-CG-5733 
       28.96        31.04        65.10         4.01        55.04        21.07 
TCGA-CG-5734 TCGA-D7-5577 TCGA-D7-5578 TCGA-D7-5579 TCGA-D7-6518 TCGA-D7-6519 
        7.99         8.65         3.58         4.54         9.80        15.65 
TCGA-D7-6520 TCGA-D7-6521 TCGA-D7-6522 TCGA-D7-6524 TCGA-D7-6525 TCGA-D7-6526 
        9.63         8.19         6.90         0.69         5.95         6.61 
TCGA-D7-6527 TCGA-D7-6528 TCGA-D7-6815 TCGA-D7-6817 TCGA-D7-6818 TCGA-D7-6820 
        4.14         1.68         3.65         4.70         4.04         2.93 
TCGA-D7-6822 TCGA-EQ-5647 TCGA-F1-6177 TCGA-F1-6874 
        4.27         0.62         6.54         2.01 

  FMOD MUTATED FMOD WILD-TYPE 
          0.49           0.07 
  FMOD MUTATED FMOD WILD-TYPE 
         21.99          70.06 
  FMOD MUTATED FMOD WILD-TYPE 
         15.95           4.01 
[1] "0.5 - 22.0 (15.9)" "0.1 - 70.1 (4.0)" 
    TCGA-B7-5816     TCGA-B7-5818     TCGA-BR-6452     TCGA-BR-6455 
"FMOD WILD-TYPE" "FMOD WILD-TYPE" "FMOD WILD-TYPE" "FMOD WILD-TYPE" 
    TCGA-BR-6457     TCGA-BR-6458     TCGA-BR-6564     TCGA-BR-6565 
"FMOD WILD-TYPE" "FMOD WILD-TYPE" "FMOD WILD-TYPE" "FMOD WILD-TYPE" 
    TCGA-BR-6566     TCGA-BR-6705     TCGA-BR-6706     TCGA-BR-6707 
"FMOD WILD-TYPE" "FMOD WILD-TYPE" "FMOD WILD-TYPE" "FMOD WILD-TYPE" 
    TCGA-BR-6709     TCGA-BR-6710     TCGA-BR-6801     TCGA-BR-6802 
"FMOD WILD-TYPE" "FMOD WILD-TYPE" "FMOD WILD-TYPE" "FMOD WILD-TYPE" 
    TCGA-BR-6803     TCGA-BR-6852     TCGA-CD-5798     TCGA-CD-5799 
"FMOD WILD-TYPE" "FMOD WILD-TYPE" "FMOD WILD-TYPE" "FMOD WILD-TYPE" 
    TCGA-CD-5800     TCGA-CD-5801     TCGA-CD-5802     TCGA-CD-5803 
"FMOD WILD-TYPE"   "FMOD MUTATED" "FMOD WILD-TYPE" "FMOD WILD-TYPE" 
    TCGA-CD-5813     TCGA-CG-4300     TCGA-CG-4301     TCGA-CG-4304 
"FMOD WILD-TYPE" "FMOD WILD-TYPE" "FMOD WILD-TYPE" "FMOD WILD-TYPE" 
    TCGA-CG-4305     TCGA-CG-4306     TCGA-CG-4436     TCGA-CG-4437 
  "FMOD MUTATED" "FMOD WILD-TYPE" "FMOD WILD-TYPE" "FMOD WILD-TYPE" 
    TCGA-CG-4438     TCGA-CG-4440     TCGA-CG-4441     TCGA-CG-4443 
"FMOD WILD-TYPE" "FMOD WILD-TYPE" "FMOD WILD-TYPE" "FMOD WILD-TYPE" 
    TCGA-CG-4444     TCGA-CG-4449     TCGA-CG-4455     TCGA-CG-4460 
"FMOD WILD-TYPE" "FMOD WILD-TYPE" "FMOD WILD-TYPE"   "FMOD MUTATED" 
    TCGA-CG-4462     TCGA-CG-4465     TCGA-CG-4466     TCGA-CG-4469 
"FMOD WILD-TYPE" "FMOD WILD-TYPE" "FMOD WILD-TYPE" "FMOD WILD-TYPE" 
    TCGA-CG-4472     TCGA-CG-4474     TCGA-CG-4477     TCGA-CG-5716 
"FMOD WILD-TYPE" "FMOD WILD-TYPE" "FMOD WILD-TYPE" "FMOD WILD-TYPE" 
    TCGA-CG-5717     TCGA-CG-5718     TCGA-CG-5719     TCGA-CG-5720 
"FMOD WILD-TYPE" "FMOD WILD-TYPE" "FMOD WILD-TYPE" "FMOD WILD-TYPE" 
    TCGA-CG-5721     TCGA-CG-5722     TCGA-CG-5723     TCGA-CG-5724 
"FMOD WILD-TYPE" "FMOD WILD-TYPE" "FMOD WILD-TYPE" "FMOD WILD-TYPE" 
    TCGA-CG-5725     TCGA-CG-5726     TCGA-CG-5727     TCGA-CG-5728 
"FMOD WILD-TYPE" "FMOD WILD-TYPE" "FMOD WILD-TYPE" "FMOD WILD-TYPE" 
    TCGA-CG-5730     TCGA-CG-5732     TCGA-CG-5733     TCGA-CG-5734 
"FMOD WILD-TYPE" "FMOD WILD-TYPE" "FMOD WILD-TYPE" "FMOD WILD-TYPE" 
    TCGA-D7-5577     TCGA-D7-5578     TCGA-D7-5579     TCGA-D7-6518 
"FMOD WILD-TYPE" "FMOD WILD-TYPE" "FMOD WILD-TYPE" "FMOD WILD-TYPE" 
    TCGA-D7-6519     TCGA-D7-6520     TCGA-D7-6521     TCGA-D7-6522 
"FMOD WILD-TYPE" "FMOD WILD-TYPE" "FMOD WILD-TYPE" "FMOD WILD-TYPE" 
    TCGA-D7-6524     TCGA-D7-6525     TCGA-D7-6526     TCGA-D7-6527 
"FMOD WILD-TYPE" "FMOD WILD-TYPE" "FMOD WILD-TYPE" "FMOD WILD-TYPE" 
    TCGA-D7-6528     TCGA-D7-6815     TCGA-D7-6817     TCGA-D7-6818 
"FMOD WILD-TYPE" "FMOD WILD-TYPE" "FMOD WILD-TYPE" "FMOD WILD-TYPE" 
    TCGA-D7-6820     TCGA-D7-6822     TCGA-EQ-5647     TCGA-F1-6177 
"FMOD WILD-TYPE" "FMOD WILD-TYPE" "FMOD WILD-TYPE" "FMOD WILD-TYPE" 
    TCGA-F1-6874 
"FMOD WILD-TYPE" 
    TCGA-B7-5816     TCGA-B7-5818     TCGA-BR-6452     TCGA-BR-6455 
"FMOD WILD-TYPE" "FMOD WILD-TYPE" "FMOD WILD-TYPE" "FMOD WILD-TYPE" 
    TCGA-BR-6457     TCGA-BR-6458     TCGA-BR-6564     TCGA-BR-6565 
"FMOD WILD-TYPE" "FMOD WILD-TYPE" "FMOD WILD-TYPE" "FMOD WILD-TYPE" 
    TCGA-BR-6566     TCGA-BR-6705     TCGA-BR-6706     TCGA-BR-6707 
"FMOD WILD-TYPE" "FMOD WILD-TYPE" "FMOD WILD-TYPE" "FMOD WILD-TYPE" 
    TCGA-BR-6709     TCGA-BR-6710     TCGA-BR-6801     TCGA-BR-6802 
"FMOD WILD-TYPE" "FMOD WILD-TYPE" "FMOD WILD-TYPE" "FMOD WILD-TYPE" 
    TCGA-BR-6803     TCGA-BR-6852     TCGA-CD-5798     TCGA-CD-5799 
"FMOD WILD-TYPE" "FMOD WILD-TYPE" "FMOD WILD-TYPE" "FMOD WILD-TYPE" 
    TCGA-CD-5800     TCGA-CD-5801     TCGA-CD-5802     TCGA-CD-5803 
"FMOD WILD-TYPE"   "FMOD MUTATED" "FMOD WILD-TYPE" "FMOD WILD-TYPE" 
    TCGA-CD-5813     TCGA-CG-4300     TCGA-CG-4301     TCGA-CG-4304 
"FMOD WILD-TYPE" "FMOD WILD-TYPE" "FMOD WILD-TYPE" "FMOD WILD-TYPE" 
    TCGA-CG-4305     TCGA-CG-4306     TCGA-CG-4436     TCGA-CG-4437 
  "FMOD MUTATED" "FMOD WILD-TYPE" "FMOD WILD-TYPE" "FMOD WILD-TYPE" 
    TCGA-CG-4438     TCGA-CG-4440     TCGA-CG-4441     TCGA-CG-4443 
"FMOD WILD-TYPE" "FMOD WILD-TYPE" "FMOD WILD-TYPE" "FMOD WILD-TYPE" 
    TCGA-CG-4444     TCGA-CG-4449     TCGA-CG-4455     TCGA-CG-4460 
"FMOD WILD-TYPE" "FMOD WILD-TYPE" "FMOD WILD-TYPE"   "FMOD MUTATED" 
    TCGA-CG-4462     TCGA-CG-4465     TCGA-CG-4466     TCGA-CG-4469 
"FMOD WILD-TYPE" "FMOD WILD-TYPE" "FMOD WILD-TYPE" "FMOD WILD-TYPE" 
    TCGA-CG-4472     TCGA-CG-4474     TCGA-CG-4477     TCGA-CG-5716 
"FMOD WILD-TYPE" "FMOD WILD-TYPE" "FMOD WILD-TYPE" "FMOD WILD-TYPE" 
    TCGA-CG-5717     TCGA-CG-5718     TCGA-CG-5719     TCGA-CG-5720 
"FMOD WILD-TYPE" "FMOD WILD-TYPE" "FMOD WILD-TYPE" "FMOD WILD-TYPE" 
    TCGA-CG-5721     TCGA-CG-5722     TCGA-CG-5723     TCGA-CG-5724 
"FMOD WILD-TYPE" "FMOD WILD-TYPE" "FMOD WILD-TYPE" "FMOD WILD-TYPE" 
    TCGA-CG-5725     TCGA-CG-5726     TCGA-CG-5727     TCGA-CG-5728 
"FMOD WILD-TYPE" "FMOD WILD-TYPE" "FMOD WILD-TYPE" "FMOD WILD-TYPE" 
    TCGA-CG-5730     TCGA-CG-5732     TCGA-CG-5733     TCGA-CG-5734 
"FMOD WILD-TYPE" "FMOD WILD-TYPE" "FMOD WILD-TYPE" "FMOD WILD-TYPE" 
    TCGA-D7-5577     TCGA-D7-5578     TCGA-D7-5579     TCGA-D7-6518 
"FMOD WILD-TYPE" "FMOD WILD-TYPE" "FMOD WILD-TYPE" "FMOD WILD-TYPE" 
    TCGA-D7-6519     TCGA-D7-6520     TCGA-D7-6521     TCGA-D7-6522 
"FMOD WILD-TYPE" "FMOD WILD-TYPE" "FMOD WILD-TYPE" "FMOD WILD-TYPE" 
    TCGA-D7-6524     TCGA-D7-6525     TCGA-D7-6526     TCGA-D7-6527 
"FMOD WILD-TYPE" "FMOD WILD-TYPE" "FMOD WILD-TYPE" "FMOD WILD-TYPE" 
    TCGA-D7-6528     TCGA-D7-6815     TCGA-D7-6817     TCGA-D7-6818 
"FMOD WILD-TYPE" "FMOD WILD-TYPE" "FMOD WILD-TYPE" "FMOD WILD-TYPE" 
    TCGA-D7-6820     TCGA-D7-6822     TCGA-EQ-5647     TCGA-F1-6177 
"FMOD WILD-TYPE" "FMOD WILD-TYPE" "FMOD WILD-TYPE" "FMOD WILD-TYPE" 
    TCGA-F1-6874 
"FMOD WILD-TYPE" 
    TCGA-B7-5816     TCGA-B7-5818     TCGA-BR-6452     TCGA-BR-6455 
"FMOD WILD-TYPE" "FMOD WILD-TYPE" "FMOD WILD-TYPE" "FMOD WILD-TYPE" 
    TCGA-BR-6457     TCGA-BR-6458     TCGA-BR-6564     TCGA-BR-6565 
"FMOD WILD-TYPE" "FMOD WILD-TYPE" "FMOD WILD-TYPE" "FMOD WILD-TYPE" 
    TCGA-BR-6566     TCGA-BR-6705     TCGA-BR-6706     TCGA-BR-6707 
"FMOD WILD-TYPE" "FMOD WILD-TYPE" "FMOD WILD-TYPE" "FMOD WILD-TYPE" 
    TCGA-BR-6709     TCGA-BR-6710     TCGA-BR-6801     TCGA-BR-6802 
"FMOD WILD-TYPE" "FMOD WILD-TYPE" "FMOD WILD-TYPE" "FMOD WILD-TYPE" 
    TCGA-BR-6803     TCGA-BR-6852     TCGA-CD-5798     TCGA-CD-5799 
"FMOD WILD-TYPE" "FMOD WILD-TYPE" "FMOD WILD-TYPE" "FMOD WILD-TYPE" 
    TCGA-CD-5800     TCGA-CD-5801     TCGA-CD-5802     TCGA-CD-5803 
"FMOD WILD-TYPE"   "FMOD MUTATED" "FMOD WILD-TYPE" "FMOD WILD-TYPE" 
    TCGA-CD-5813     TCGA-CG-4300     TCGA-CG-4301     TCGA-CG-4304 
"FMOD WILD-TYPE" "FMOD WILD-TYPE" "FMOD WILD-TYPE" "FMOD WILD-TYPE" 
    TCGA-CG-4305     TCGA-CG-4306     TCGA-CG-4436     TCGA-CG-4437 
  "FMOD MUTATED" "FMOD WILD-TYPE" "FMOD WILD-TYPE" "FMOD WILD-TYPE" 
    TCGA-CG-4438     TCGA-CG-4440     TCGA-CG-4441     TCGA-CG-4443 
"FMOD WILD-TYPE" "FMOD WILD-TYPE" "FMOD WILD-TYPE" "FMOD WILD-TYPE" 
    TCGA-CG-4444     TCGA-CG-4449     TCGA-CG-4455     TCGA-CG-4460 
"FMOD WILD-TYPE" "FMOD WILD-TYPE" "FMOD WILD-TYPE"   "FMOD MUTATED" 
    TCGA-CG-4462     TCGA-CG-4465     TCGA-CG-4466     TCGA-CG-4469 
"FMOD WILD-TYPE" "FMOD WILD-TYPE" "FMOD WILD-TYPE" "FMOD WILD-TYPE" 
    TCGA-CG-4472     TCGA-CG-4474     TCGA-CG-4477     TCGA-CG-5716 
"FMOD WILD-TYPE" "FMOD WILD-TYPE" "FMOD WILD-TYPE" "FMOD WILD-TYPE" 
    TCGA-CG-5717     TCGA-CG-5718     TCGA-CG-5719     TCGA-CG-5720 
"FMOD WILD-TYPE" "FMOD WILD-TYPE" "FMOD WILD-TYPE" "FMOD WILD-TYPE" 
    TCGA-CG-5721     TCGA-CG-5722     TCGA-CG-5723     TCGA-CG-5724 
"FMOD WILD-TYPE" "FMOD WILD-TYPE" "FMOD WILD-TYPE" "FMOD WILD-TYPE" 
    TCGA-CG-5725     TCGA-CG-5726     TCGA-CG-5727     TCGA-CG-5728 
"FMOD WILD-TYPE" "FMOD WILD-TYPE" "FMOD WILD-TYPE" "FMOD WILD-TYPE" 
    TCGA-CG-5730     TCGA-CG-5732     TCGA-CG-5733     TCGA-CG-5734 
"FMOD WILD-TYPE" "FMOD WILD-TYPE" "FMOD WILD-TYPE" "FMOD WILD-TYPE" 
    TCGA-D7-5577     TCGA-D7-5578     TCGA-D7-5579     TCGA-D7-6518 
"FMOD WILD-TYPE" "FMOD WILD-TYPE" "FMOD WILD-TYPE" "FMOD WILD-TYPE" 
    TCGA-D7-6519     TCGA-D7-6520     TCGA-D7-6521     TCGA-D7-6522 
"FMOD WILD-TYPE" "FMOD WILD-TYPE" "FMOD WILD-TYPE" "FMOD WILD-TYPE" 
    TCGA-D7-6524     TCGA-D7-6525     TCGA-D7-6526     TCGA-D7-6527 
"FMOD WILD-TYPE" "FMOD WILD-TYPE" "FMOD WILD-TYPE" "FMOD WILD-TYPE" 
    TCGA-D7-6528     TCGA-D7-6815     TCGA-D7-6817     TCGA-D7-6818 
"FMOD WILD-TYPE" "FMOD WILD-TYPE" "FMOD WILD-TYPE" "FMOD WILD-TYPE" 
    TCGA-D7-6820     TCGA-D7-6822     TCGA-EQ-5647     TCGA-F1-6177 
"FMOD WILD-TYPE" "FMOD WILD-TYPE" "FMOD WILD-TYPE" "FMOD WILD-TYPE" 
    TCGA-F1-6874 
"FMOD WILD-TYPE" 
[1] "hr=" "1.1"
D37V2, continuous
D37V3, binary
[1] "tbl2"
                cls
clus             [,1] [,2]
  FMOD MUTATED      4    4
  FMOD WILD-TYPE   42   66
        clus
vv       FMOD MUTATED FMOD WILD-TYPE
  FEMALE            4             42
  MALE              4             66
D37V4, multiclass
D37V5, multiclass
    clus
vv   FMOD MUTATED FMOD WILD-TYPE
  T1            0              4
  T2            4             42
  T3            1             40
  T4            1             14
D37V6, multiclass
    clus
vv   FMOD MUTATED FMOD WILD-TYPE
  N0            0             35
  N1            6             33
  N2            0             19
  N3            0             12
D37V7, multiclass
    clus
vv   FMOD MUTATED FMOD WILD-TYPE
  M0            7             92
  M1            1             12
  MX            0              4
D37V8, multiclass
     clus
vv    FMOD MUTATED FMOD WILD-TYPE
  I              0             18
  II             2             30
  III            2             27
  IV             1             20

Clustering(38) Variable = BMPR2 MUTATION ANALYSIS
D38V1, survival
                 sevent
clus2              0  1
  BMPR2 MUTATED    5  2
  BMPR2 WILD-TYPE 66 12
  BMPR2 MUTATED BMPR2 WILD-TYPE 
              7              78 
  BMPR2 MUTATED BMPR2 WILD-TYPE 
              2              12 
$`BMPR2 MUTATED`
TCGA-BR-6852 TCGA-CG-4305 TCGA-CG-4465 TCGA-CG-5728 TCGA-CG-5734 TCGA-D7-6524 
        0.26        15.95         8.98        65.10         7.99         0.69 
TCGA-F1-6874 
        2.01 

$`BMPR2 WILD-TYPE`
TCGA-B7-5816 TCGA-B7-5818 TCGA-BR-6452 TCGA-BR-6455 TCGA-BR-6457 TCGA-BR-6458 
        5.62         0.10         0.95         1.41         1.35         1.35 
TCGA-BR-6564 TCGA-BR-6565 TCGA-BR-6566 TCGA-BR-6705 TCGA-BR-6706 TCGA-BR-6707 
        0.82         0.62         0.62         1.71         2.17         0.99 
TCGA-BR-6709 TCGA-BR-6710 TCGA-BR-6801 TCGA-BR-6802 TCGA-BR-6803 TCGA-CD-5798 
        1.22         0.66         1.12         0.76         0.66         0.82 
TCGA-CD-5799 TCGA-CD-5800 TCGA-CD-5801 TCGA-CD-5802 TCGA-CD-5803 TCGA-CD-5813 
        0.69         0.36         0.49         0.30         0.07         0.39 
TCGA-CG-4300 TCGA-CG-4301 TCGA-CG-4304 TCGA-CG-4306 TCGA-CG-4436 TCGA-CG-4437 
       20.02         3.02        27.02         1.02        52.96         8.05 
TCGA-CG-4438 TCGA-CG-4440 TCGA-CG-4441 TCGA-CG-4443 TCGA-CG-4444 TCGA-CG-4449 
       54.05         4.01        14.01        29.98        47.05        19.07 
TCGA-CG-4455 TCGA-CG-4460 TCGA-CG-4462 TCGA-CG-4466 TCGA-CG-4469 TCGA-CG-4472 
       12.03        21.99         1.02        18.94         7.07        12.00 
TCGA-CG-4474 TCGA-CG-4477 TCGA-CG-5716 TCGA-CG-5717 TCGA-CG-5718 TCGA-CG-5719 
        1.02         1.02         1.02         6.94         1.02         1.02 
TCGA-CG-5720 TCGA-CG-5721 TCGA-CG-5722 TCGA-CG-5723 TCGA-CG-5724 TCGA-CG-5725 
        0.99         5.98         0.95        70.06        12.03        15.02 
TCGA-CG-5726 TCGA-CG-5727 TCGA-CG-5730 TCGA-CG-5732 TCGA-CG-5733 TCGA-D7-5577 
       28.96        31.04         4.01        55.04        21.07         8.65 
TCGA-D7-5578 TCGA-D7-5579 TCGA-D7-6518 TCGA-D7-6519 TCGA-D7-6520 TCGA-D7-6521 
        3.58         4.54         9.80        15.65         9.63         8.19 
TCGA-D7-6522 TCGA-D7-6525 TCGA-D7-6526 TCGA-D7-6527 TCGA-D7-6528 TCGA-D7-6815 
        6.90         5.95         6.61         4.14         1.68         3.65 
TCGA-D7-6817 TCGA-D7-6818 TCGA-D7-6820 TCGA-D7-6822 TCGA-EQ-5647 TCGA-F1-6177 
        4.70         4.04         2.93         4.27         0.62         6.54 

  BMPR2 MUTATED BMPR2 WILD-TYPE 
           0.26            0.07 
  BMPR2 MUTATED BMPR2 WILD-TYPE 
          65.10           70.06 
  BMPR2 MUTATED BMPR2 WILD-TYPE 
           7.99            4.01 
[1] "0.3 - 65.1 (8.0)" "0.1 - 70.1 (4.0)"
     TCGA-B7-5816      TCGA-B7-5818      TCGA-BR-6452      TCGA-BR-6455 
"BMPR2 WILD-TYPE" "BMPR2 WILD-TYPE" "BMPR2 WILD-TYPE" "BMPR2 WILD-TYPE" 
     TCGA-BR-6457      TCGA-BR-6458      TCGA-BR-6564      TCGA-BR-6565 
"BMPR2 WILD-TYPE" "BMPR2 WILD-TYPE" "BMPR2 WILD-TYPE" "BMPR2 WILD-TYPE" 
     TCGA-BR-6566      TCGA-BR-6705      TCGA-BR-6706      TCGA-BR-6707 
"BMPR2 WILD-TYPE" "BMPR2 WILD-TYPE" "BMPR2 WILD-TYPE" "BMPR2 WILD-TYPE" 
     TCGA-BR-6709      TCGA-BR-6710      TCGA-BR-6801      TCGA-BR-6802 
"BMPR2 WILD-TYPE" "BMPR2 WILD-TYPE" "BMPR2 WILD-TYPE" "BMPR2 WILD-TYPE" 
     TCGA-BR-6803      TCGA-BR-6852      TCGA-CD-5798      TCGA-CD-5799 
"BMPR2 WILD-TYPE"   "BMPR2 MUTATED" "BMPR2 WILD-TYPE" "BMPR2 WILD-TYPE" 
     TCGA-CD-5800      TCGA-CD-5801      TCGA-CD-5802      TCGA-CD-5803 
"BMPR2 WILD-TYPE" "BMPR2 WILD-TYPE" "BMPR2 WILD-TYPE" "BMPR2 WILD-TYPE" 
     TCGA-CD-5813      TCGA-CG-4300      TCGA-CG-4301      TCGA-CG-4304 
"BMPR2 WILD-TYPE" "BMPR2 WILD-TYPE" "BMPR2 WILD-TYPE" "BMPR2 WILD-TYPE" 
     TCGA-CG-4305      TCGA-CG-4306      TCGA-CG-4436      TCGA-CG-4437 
  "BMPR2 MUTATED" "BMPR2 WILD-TYPE" "BMPR2 WILD-TYPE" "BMPR2 WILD-TYPE" 
     TCGA-CG-4438      TCGA-CG-4440      TCGA-CG-4441      TCGA-CG-4443 
"BMPR2 WILD-TYPE" "BMPR2 WILD-TYPE" "BMPR2 WILD-TYPE" "BMPR2 WILD-TYPE" 
     TCGA-CG-4444      TCGA-CG-4449      TCGA-CG-4455      TCGA-CG-4460 
"BMPR2 WILD-TYPE" "BMPR2 WILD-TYPE" "BMPR2 WILD-TYPE" "BMPR2 WILD-TYPE" 
     TCGA-CG-4462      TCGA-CG-4465      TCGA-CG-4466      TCGA-CG-4469 
"BMPR2 WILD-TYPE"   "BMPR2 MUTATED" "BMPR2 WILD-TYPE" "BMPR2 WILD-TYPE" 
     TCGA-CG-4472      TCGA-CG-4474      TCGA-CG-4477      TCGA-CG-5716 
"BMPR2 WILD-TYPE" "BMPR2 WILD-TYPE" "BMPR2 WILD-TYPE" "BMPR2 WILD-TYPE" 
     TCGA-CG-5717      TCGA-CG-5718      TCGA-CG-5719      TCGA-CG-5720 
"BMPR2 WILD-TYPE" "BMPR2 WILD-TYPE" "BMPR2 WILD-TYPE" "BMPR2 WILD-TYPE" 
     TCGA-CG-5721      TCGA-CG-5722      TCGA-CG-5723      TCGA-CG-5724 
"BMPR2 WILD-TYPE" "BMPR2 WILD-TYPE" "BMPR2 WILD-TYPE" "BMPR2 WILD-TYPE" 
     TCGA-CG-5725      TCGA-CG-5726      TCGA-CG-5727      TCGA-CG-5728 
"BMPR2 WILD-TYPE" "BMPR2 WILD-TYPE" "BMPR2 WILD-TYPE"   "BMPR2 MUTATED" 
     TCGA-CG-5730      TCGA-CG-5732      TCGA-CG-5733      TCGA-CG-5734 
"BMPR2 WILD-TYPE" "BMPR2 WILD-TYPE" "BMPR2 WILD-TYPE"   "BMPR2 MUTATED" 
     TCGA-D7-5577      TCGA-D7-5578      TCGA-D7-5579      TCGA-D7-6518 
"BMPR2 WILD-TYPE" "BMPR2 WILD-TYPE" "BMPR2 WILD-TYPE" "BMPR2 WILD-TYPE" 
     TCGA-D7-6519      TCGA-D7-6520      TCGA-D7-6521      TCGA-D7-6522 
"BMPR2 WILD-TYPE" "BMPR2 WILD-TYPE" "BMPR2 WILD-TYPE" "BMPR2 WILD-TYPE" 
     TCGA-D7-6524      TCGA-D7-6525      TCGA-D7-6526      TCGA-D7-6527 
  "BMPR2 MUTATED" "BMPR2 WILD-TYPE" "BMPR2 WILD-TYPE" "BMPR2 WILD-TYPE" 
     TCGA-D7-6528      TCGA-D7-6815      TCGA-D7-6817      TCGA-D7-6818 
"BMPR2 WILD-TYPE" "BMPR2 WILD-TYPE" "BMPR2 WILD-TYPE" "BMPR2 WILD-TYPE" 
     TCGA-D7-6820      TCGA-D7-6822      TCGA-EQ-5647      TCGA-F1-6177 
"BMPR2 WILD-TYPE" "BMPR2 WILD-TYPE" "BMPR2 WILD-TYPE" "BMPR2 WILD-TYPE" 
     TCGA-F1-6874 
  "BMPR2 MUTATED" 
     TCGA-B7-5816      TCGA-B7-5818      TCGA-BR-6452      TCGA-BR-6455 
"BMPR2 WILD-TYPE" "BMPR2 WILD-TYPE" "BMPR2 WILD-TYPE" "BMPR2 WILD-TYPE" 
     TCGA-BR-6457      TCGA-BR-6458      TCGA-BR-6564      TCGA-BR-6565 
"BMPR2 WILD-TYPE" "BMPR2 WILD-TYPE" "BMPR2 WILD-TYPE" "BMPR2 WILD-TYPE" 
     TCGA-BR-6566      TCGA-BR-6705      TCGA-BR-6706      TCGA-BR-6707 
"BMPR2 WILD-TYPE" "BMPR2 WILD-TYPE" "BMPR2 WILD-TYPE" "BMPR2 WILD-TYPE" 
     TCGA-BR-6709      TCGA-BR-6710      TCGA-BR-6801      TCGA-BR-6802 
"BMPR2 WILD-TYPE" "BMPR2 WILD-TYPE" "BMPR2 WILD-TYPE" "BMPR2 WILD-TYPE" 
     TCGA-BR-6803      TCGA-BR-6852      TCGA-CD-5798      TCGA-CD-5799 
"BMPR2 WILD-TYPE"   "BMPR2 MUTATED" "BMPR2 WILD-TYPE" "BMPR2 WILD-TYPE" 
     TCGA-CD-5800      TCGA-CD-5801      TCGA-CD-5802      TCGA-CD-5803 
"BMPR2 WILD-TYPE" "BMPR2 WILD-TYPE" "BMPR2 WILD-TYPE" "BMPR2 WILD-TYPE" 
     TCGA-CD-5813      TCGA-CG-4300      TCGA-CG-4301      TCGA-CG-4304 
"BMPR2 WILD-TYPE" "BMPR2 WILD-TYPE" "BMPR2 WILD-TYPE" "BMPR2 WILD-TYPE" 
     TCGA-CG-4305      TCGA-CG-4306      TCGA-CG-4436      TCGA-CG-4437 
  "BMPR2 MUTATED" "BMPR2 WILD-TYPE" "BMPR2 WILD-TYPE" "BMPR2 WILD-TYPE" 
     TCGA-CG-4438      TCGA-CG-4440      TCGA-CG-4441      TCGA-CG-4443 
"BMPR2 WILD-TYPE" "BMPR2 WILD-TYPE" "BMPR2 WILD-TYPE" "BMPR2 WILD-TYPE" 
     TCGA-CG-4444      TCGA-CG-4449      TCGA-CG-4455      TCGA-CG-4460 
"BMPR2 WILD-TYPE" "BMPR2 WILD-TYPE" "BMPR2 WILD-TYPE" "BMPR2 WILD-TYPE" 
     TCGA-CG-4462      TCGA-CG-4465      TCGA-CG-4466      TCGA-CG-4469 
"BMPR2 WILD-TYPE"   "BMPR2 MUTATED" "BMPR2 WILD-TYPE" "BMPR2 WILD-TYPE" 
     TCGA-CG-4472      TCGA-CG-4474      TCGA-CG-4477      TCGA-CG-5716 
"BMPR2 WILD-TYPE" "BMPR2 WILD-TYPE" "BMPR2 WILD-TYPE" "BMPR2 WILD-TYPE" 
     TCGA-CG-5717      TCGA-CG-5718      TCGA-CG-5719      TCGA-CG-5720 
"BMPR2 WILD-TYPE" "BMPR2 WILD-TYPE" "BMPR2 WILD-TYPE" "BMPR2 WILD-TYPE" 
     TCGA-CG-5721      TCGA-CG-5722      TCGA-CG-5723      TCGA-CG-5724 
"BMPR2 WILD-TYPE" "BMPR2 WILD-TYPE" "BMPR2 WILD-TYPE" "BMPR2 WILD-TYPE" 
     TCGA-CG-5725      TCGA-CG-5726      TCGA-CG-5727      TCGA-CG-5728 
"BMPR2 WILD-TYPE" "BMPR2 WILD-TYPE" "BMPR2 WILD-TYPE"   "BMPR2 MUTATED" 
     TCGA-CG-5730      TCGA-CG-5732      TCGA-CG-5733      TCGA-CG-5734 
"BMPR2 WILD-TYPE" "BMPR2 WILD-TYPE" "BMPR2 WILD-TYPE"   "BMPR2 MUTATED" 
     TCGA-D7-5577      TCGA-D7-5578      TCGA-D7-5579      TCGA-D7-6518 
"BMPR2 WILD-TYPE" "BMPR2 WILD-TYPE" "BMPR2 WILD-TYPE" "BMPR2 WILD-TYPE" 
     TCGA-D7-6519      TCGA-D7-6520      TCGA-D7-6521      TCGA-D7-6522 
"BMPR2 WILD-TYPE" "BMPR2 WILD-TYPE" "BMPR2 WILD-TYPE" "BMPR2 WILD-TYPE" 
     TCGA-D7-6524      TCGA-D7-6525      TCGA-D7-6526      TCGA-D7-6527 
  "BMPR2 MUTATED" "BMPR2 WILD-TYPE" "BMPR2 WILD-TYPE" "BMPR2 WILD-TYPE" 
     TCGA-D7-6528      TCGA-D7-6815      TCGA-D7-6817      TCGA-D7-6818 
"BMPR2 WILD-TYPE" "BMPR2 WILD-TYPE" "BMPR2 WILD-TYPE" "BMPR2 WILD-TYPE" 
     TCGA-D7-6820      TCGA-D7-6822      TCGA-EQ-5647      TCGA-F1-6177 
"BMPR2 WILD-TYPE" "BMPR2 WILD-TYPE" "BMPR2 WILD-TYPE" "BMPR2 WILD-TYPE" 
     TCGA-F1-6874 
  "BMPR2 MUTATED" 
     TCGA-B7-5816      TCGA-B7-5818      TCGA-BR-6452      TCGA-BR-6455 
"BMPR2 WILD-TYPE" "BMPR2 WILD-TYPE" "BMPR2 WILD-TYPE" "BMPR2 WILD-TYPE" 
     TCGA-BR-6457      TCGA-BR-6458      TCGA-BR-6564      TCGA-BR-6565 
"BMPR2 WILD-TYPE" "BMPR2 WILD-TYPE" "BMPR2 WILD-TYPE" "BMPR2 WILD-TYPE" 
     TCGA-BR-6566      TCGA-BR-6705      TCGA-BR-6706      TCGA-BR-6707 
"BMPR2 WILD-TYPE" "BMPR2 WILD-TYPE" "BMPR2 WILD-TYPE" "BMPR2 WILD-TYPE" 
     TCGA-BR-6709      TCGA-BR-6710      TCGA-BR-6801      TCGA-BR-6802 
"BMPR2 WILD-TYPE" "BMPR2 WILD-TYPE" "BMPR2 WILD-TYPE" "BMPR2 WILD-TYPE" 
     TCGA-BR-6803      TCGA-BR-6852      TCGA-CD-5798      TCGA-CD-5799 
"BMPR2 WILD-TYPE"   "BMPR2 MUTATED" "BMPR2 WILD-TYPE" "BMPR2 WILD-TYPE" 
     TCGA-CD-5800      TCGA-CD-5801      TCGA-CD-5802      TCGA-CD-5803 
"BMPR2 WILD-TYPE" "BMPR2 WILD-TYPE" "BMPR2 WILD-TYPE" "BMPR2 WILD-TYPE" 
     TCGA-CD-5813      TCGA-CG-4300      TCGA-CG-4301      TCGA-CG-4304 
"BMPR2 WILD-TYPE" "BMPR2 WILD-TYPE" "BMPR2 WILD-TYPE" "BMPR2 WILD-TYPE" 
     TCGA-CG-4305      TCGA-CG-4306      TCGA-CG-4436      TCGA-CG-4437 
  "BMPR2 MUTATED" "BMPR2 WILD-TYPE" "BMPR2 WILD-TYPE" "BMPR2 WILD-TYPE" 
     TCGA-CG-4438      TCGA-CG-4440      TCGA-CG-4441      TCGA-CG-4443 
"BMPR2 WILD-TYPE" "BMPR2 WILD-TYPE" "BMPR2 WILD-TYPE" "BMPR2 WILD-TYPE" 
     TCGA-CG-4444      TCGA-CG-4449      TCGA-CG-4455      TCGA-CG-4460 
"BMPR2 WILD-TYPE" "BMPR2 WILD-TYPE" "BMPR2 WILD-TYPE" "BMPR2 WILD-TYPE" 
     TCGA-CG-4462      TCGA-CG-4465      TCGA-CG-4466      TCGA-CG-4469 
"BMPR2 WILD-TYPE"   "BMPR2 MUTATED" "BMPR2 WILD-TYPE" "BMPR2 WILD-TYPE" 
     TCGA-CG-4472      TCGA-CG-4474      TCGA-CG-4477      TCGA-CG-5716 
"BMPR2 WILD-TYPE" "BMPR2 WILD-TYPE" "BMPR2 WILD-TYPE" "BMPR2 WILD-TYPE" 
     TCGA-CG-5717      TCGA-CG-5718      TCGA-CG-5719      TCGA-CG-5720 
"BMPR2 WILD-TYPE" "BMPR2 WILD-TYPE" "BMPR2 WILD-TYPE" "BMPR2 WILD-TYPE" 
     TCGA-CG-5721      TCGA-CG-5722      TCGA-CG-5723      TCGA-CG-5724 
"BMPR2 WILD-TYPE" "BMPR2 WILD-TYPE" "BMPR2 WILD-TYPE" "BMPR2 WILD-TYPE" 
     TCGA-CG-5725      TCGA-CG-5726      TCGA-CG-5727      TCGA-CG-5728 
"BMPR2 WILD-TYPE" "BMPR2 WILD-TYPE" "BMPR2 WILD-TYPE"   "BMPR2 MUTATED" 
     TCGA-CG-5730      TCGA-CG-5732      TCGA-CG-5733      TCGA-CG-5734 
"BMPR2 WILD-TYPE" "BMPR2 WILD-TYPE" "BMPR2 WILD-TYPE"   "BMPR2 MUTATED" 
     TCGA-D7-5577      TCGA-D7-5578      TCGA-D7-5579      TCGA-D7-6518 
"BMPR2 WILD-TYPE" "BMPR2 WILD-TYPE" "BMPR2 WILD-TYPE" "BMPR2 WILD-TYPE" 
     TCGA-D7-6519      TCGA-D7-6520      TCGA-D7-6521      TCGA-D7-6522 
"BMPR2 WILD-TYPE" "BMPR2 WILD-TYPE" "BMPR2 WILD-TYPE" "BMPR2 WILD-TYPE" 
     TCGA-D7-6524      TCGA-D7-6525      TCGA-D7-6526      TCGA-D7-6527 
  "BMPR2 MUTATED" "BMPR2 WILD-TYPE" "BMPR2 WILD-TYPE" "BMPR2 WILD-TYPE" 
     TCGA-D7-6528      TCGA-D7-6815      TCGA-D7-6817      TCGA-D7-6818 
"BMPR2 WILD-TYPE" "BMPR2 WILD-TYPE" "BMPR2 WILD-TYPE" "BMPR2 WILD-TYPE" 
     TCGA-D7-6820      TCGA-D7-6822      TCGA-EQ-5647      TCGA-F1-6177 
"BMPR2 WILD-TYPE" "BMPR2 WILD-TYPE" "BMPR2 WILD-TYPE" "BMPR2 WILD-TYPE" 
     TCGA-F1-6874 
  "BMPR2 MUTATED" 
[1] "hr=" "1.5"
D38V2, continuous
D38V3, binary
[1] "tbl2"
                 cls
clus              [,1] [,2]
  BMPR2 MUTATED      5    4
  BMPR2 WILD-TYPE   41   66
        clus
vv       BMPR2 MUTATED BMPR2 WILD-TYPE
  FEMALE             5              41
  MALE               4              66
D38V4, multiclass
D38V5, multiclass
    clus
vv   BMPR2 MUTATED BMPR2 WILD-TYPE
  T1             0               4
  T2             5              41
  T3             2              39
  T4             1              14
D38V6, multiclass
    clus
vv   BMPR2 MUTATED BMPR2 WILD-TYPE
  N0             3              32
  N1             4              35
  N2             0              19
  N3             1              11
D38V7, multiclass
    clus
vv   BMPR2 MUTATED BMPR2 WILD-TYPE
  M0             8              91
  M1             1              12
  MX             0               4
D38V8, multiclass
     clus
vv    BMPR2 MUTATED BMPR2 WILD-TYPE
  I               2              16
  II              3              29
  III             2              27
  IV              1              20

Clustering(39) Variable = CNBD1 MUTATION ANALYSIS
D39V1, survival
                 sevent
clus2              0  1
  CNBD1 MUTATED    2  0
  CNBD1 WILD-TYPE 69 14
  CNBD1 MUTATED CNBD1 WILD-TYPE 
              2              83 
  CNBD1 MUTATED CNBD1 WILD-TYPE 
              0              14 
$`CNBD1 MUTATED`
TCGA-D7-6519 TCGA-D7-6528 
       15.65         1.68 

$`CNBD1 WILD-TYPE`
TCGA-B7-5816 TCGA-B7-5818 TCGA-BR-6452 TCGA-BR-6455 TCGA-BR-6457 TCGA-BR-6458 
        5.62         0.10         0.95         1.41         1.35         1.35 
TCGA-BR-6564 TCGA-BR-6565 TCGA-BR-6566 TCGA-BR-6705 TCGA-BR-6706 TCGA-BR-6707 
        0.82         0.62         0.62         1.71         2.17         0.99 
TCGA-BR-6709 TCGA-BR-6710 TCGA-BR-6801 TCGA-BR-6802 TCGA-BR-6803 TCGA-BR-6852 
        1.22         0.66         1.12         0.76         0.66         0.26 
TCGA-CD-5798 TCGA-CD-5799 TCGA-CD-5800 TCGA-CD-5801 TCGA-CD-5802 TCGA-CD-5803 
        0.82         0.69         0.36         0.49         0.30         0.07 
TCGA-CD-5813 TCGA-CG-4300 TCGA-CG-4301 TCGA-CG-4304 TCGA-CG-4305 TCGA-CG-4306 
        0.39        20.02         3.02        27.02        15.95         1.02 
TCGA-CG-4436 TCGA-CG-4437 TCGA-CG-4438 TCGA-CG-4440 TCGA-CG-4441 TCGA-CG-4443 
       52.96         8.05        54.05         4.01        14.01        29.98 
TCGA-CG-4444 TCGA-CG-4449 TCGA-CG-4455 TCGA-CG-4460 TCGA-CG-4462 TCGA-CG-4465 
       47.05        19.07        12.03        21.99         1.02         8.98 
TCGA-CG-4466 TCGA-CG-4469 TCGA-CG-4472 TCGA-CG-4474 TCGA-CG-4477 TCGA-CG-5716 
       18.94         7.07        12.00         1.02         1.02         1.02 
TCGA-CG-5717 TCGA-CG-5718 TCGA-CG-5719 TCGA-CG-5720 TCGA-CG-5721 TCGA-CG-5722 
        6.94         1.02         1.02         0.99         5.98         0.95 
TCGA-CG-5723 TCGA-CG-5724 TCGA-CG-5725 TCGA-CG-5726 TCGA-CG-5727 TCGA-CG-5728 
       70.06        12.03        15.02        28.96        31.04        65.10 
TCGA-CG-5730 TCGA-CG-5732 TCGA-CG-5733 TCGA-CG-5734 TCGA-D7-5577 TCGA-D7-5578 
        4.01        55.04        21.07         7.99         8.65         3.58 
TCGA-D7-5579 TCGA-D7-6518 TCGA-D7-6520 TCGA-D7-6521 TCGA-D7-6522 TCGA-D7-6524 
        4.54         9.80         9.63         8.19         6.90         0.69 
TCGA-D7-6525 TCGA-D7-6526 TCGA-D7-6527 TCGA-D7-6815 TCGA-D7-6817 TCGA-D7-6818 
        5.95         6.61         4.14         3.65         4.70         4.04 
TCGA-D7-6820 TCGA-D7-6822 TCGA-EQ-5647 TCGA-F1-6177 TCGA-F1-6874 
        2.93         4.27         0.62         6.54         2.01 

  CNBD1 MUTATED CNBD1 WILD-TYPE 
           1.68            0.07 
  CNBD1 MUTATED CNBD1 WILD-TYPE 
          15.65           70.06 
  CNBD1 MUTATED CNBD1 WILD-TYPE 
          8.665           4.010 
[1] "1.7 - 15.7 (8.7)" "0.1 - 70.1 (4.0)"
     TCGA-B7-5816      TCGA-B7-5818      TCGA-BR-6452      TCGA-BR-6455 
"CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" 
     TCGA-BR-6457      TCGA-BR-6458      TCGA-BR-6564      TCGA-BR-6565 
"CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" 
     TCGA-BR-6566      TCGA-BR-6705      TCGA-BR-6706      TCGA-BR-6707 
"CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" 
     TCGA-BR-6709      TCGA-BR-6710      TCGA-BR-6801      TCGA-BR-6802 
"CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" 
     TCGA-BR-6803      TCGA-BR-6852      TCGA-CD-5798      TCGA-CD-5799 
"CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" 
     TCGA-CD-5800      TCGA-CD-5801      TCGA-CD-5802      TCGA-CD-5803 
"CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" 
     TCGA-CD-5813      TCGA-CG-4300      TCGA-CG-4301      TCGA-CG-4304 
"CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" 
     TCGA-CG-4305      TCGA-CG-4306      TCGA-CG-4436      TCGA-CG-4437 
"CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" 
     TCGA-CG-4438      TCGA-CG-4440      TCGA-CG-4441      TCGA-CG-4443 
"CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" 
     TCGA-CG-4444      TCGA-CG-4449      TCGA-CG-4455      TCGA-CG-4460 
"CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" 
     TCGA-CG-4462      TCGA-CG-4465      TCGA-CG-4466      TCGA-CG-4469 
"CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" 
     TCGA-CG-4472      TCGA-CG-4474      TCGA-CG-4477      TCGA-CG-5716 
"CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" 
     TCGA-CG-5717      TCGA-CG-5718      TCGA-CG-5719      TCGA-CG-5720 
"CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" 
     TCGA-CG-5721      TCGA-CG-5722      TCGA-CG-5723      TCGA-CG-5724 
"CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" 
     TCGA-CG-5725      TCGA-CG-5726      TCGA-CG-5727      TCGA-CG-5728 
"CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" 
     TCGA-CG-5730      TCGA-CG-5732      TCGA-CG-5733      TCGA-CG-5734 
"CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" 
     TCGA-D7-5577      TCGA-D7-5578      TCGA-D7-5579      TCGA-D7-6518 
"CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" 
     TCGA-D7-6519      TCGA-D7-6520      TCGA-D7-6521      TCGA-D7-6522 
  "CNBD1 MUTATED" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" 
     TCGA-D7-6524      TCGA-D7-6525      TCGA-D7-6526      TCGA-D7-6527 
"CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" 
     TCGA-D7-6528      TCGA-D7-6815      TCGA-D7-6817      TCGA-D7-6818 
  "CNBD1 MUTATED" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" 
     TCGA-D7-6820      TCGA-D7-6822      TCGA-EQ-5647      TCGA-F1-6177 
"CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" 
     TCGA-F1-6874 
"CNBD1 WILD-TYPE" 
     TCGA-B7-5816      TCGA-B7-5818      TCGA-BR-6452      TCGA-BR-6455 
"CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" 
     TCGA-BR-6457      TCGA-BR-6458      TCGA-BR-6564      TCGA-BR-6565 
"CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" 
     TCGA-BR-6566      TCGA-BR-6705      TCGA-BR-6706      TCGA-BR-6707 
"CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" 
     TCGA-BR-6709      TCGA-BR-6710      TCGA-BR-6801      TCGA-BR-6802 
"CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" 
     TCGA-BR-6803      TCGA-BR-6852      TCGA-CD-5798      TCGA-CD-5799 
"CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" 
     TCGA-CD-5800      TCGA-CD-5801      TCGA-CD-5802      TCGA-CD-5803 
"CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" 
     TCGA-CD-5813      TCGA-CG-4300      TCGA-CG-4301      TCGA-CG-4304 
"CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" 
     TCGA-CG-4305      TCGA-CG-4306      TCGA-CG-4436      TCGA-CG-4437 
"CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" 
     TCGA-CG-4438      TCGA-CG-4440      TCGA-CG-4441      TCGA-CG-4443 
"CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" 
     TCGA-CG-4444      TCGA-CG-4449      TCGA-CG-4455      TCGA-CG-4460 
"CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" 
     TCGA-CG-4462      TCGA-CG-4465      TCGA-CG-4466      TCGA-CG-4469 
"CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" 
     TCGA-CG-4472      TCGA-CG-4474      TCGA-CG-4477      TCGA-CG-5716 
"CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" 
     TCGA-CG-5717      TCGA-CG-5718      TCGA-CG-5719      TCGA-CG-5720 
"CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" 
     TCGA-CG-5721      TCGA-CG-5722      TCGA-CG-5723      TCGA-CG-5724 
"CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" 
     TCGA-CG-5725      TCGA-CG-5726      TCGA-CG-5727      TCGA-CG-5728 
"CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" 
     TCGA-CG-5730      TCGA-CG-5732      TCGA-CG-5733      TCGA-CG-5734 
"CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" 
     TCGA-D7-5577      TCGA-D7-5578      TCGA-D7-5579      TCGA-D7-6518 
"CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" 
     TCGA-D7-6519      TCGA-D7-6520      TCGA-D7-6521      TCGA-D7-6522 
  "CNBD1 MUTATED" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" 
     TCGA-D7-6524      TCGA-D7-6525      TCGA-D7-6526      TCGA-D7-6527 
"CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" 
     TCGA-D7-6528      TCGA-D7-6815      TCGA-D7-6817      TCGA-D7-6818 
  "CNBD1 MUTATED" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" 
     TCGA-D7-6820      TCGA-D7-6822      TCGA-EQ-5647      TCGA-F1-6177 
"CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" 
     TCGA-F1-6874 
"CNBD1 WILD-TYPE" 
     TCGA-B7-5816      TCGA-B7-5818      TCGA-BR-6452      TCGA-BR-6455 
"CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" 
     TCGA-BR-6457      TCGA-BR-6458      TCGA-BR-6564      TCGA-BR-6565 
"CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" 
     TCGA-BR-6566      TCGA-BR-6705      TCGA-BR-6706      TCGA-BR-6707 
"CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" 
     TCGA-BR-6709      TCGA-BR-6710      TCGA-BR-6801      TCGA-BR-6802 
"CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" 
     TCGA-BR-6803      TCGA-BR-6852      TCGA-CD-5798      TCGA-CD-5799 
"CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" 
     TCGA-CD-5800      TCGA-CD-5801      TCGA-CD-5802      TCGA-CD-5803 
"CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" 
     TCGA-CD-5813      TCGA-CG-4300      TCGA-CG-4301      TCGA-CG-4304 
"CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" 
     TCGA-CG-4305      TCGA-CG-4306      TCGA-CG-4436      TCGA-CG-4437 
"CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" 
     TCGA-CG-4438      TCGA-CG-4440      TCGA-CG-4441      TCGA-CG-4443 
"CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" 
     TCGA-CG-4444      TCGA-CG-4449      TCGA-CG-4455      TCGA-CG-4460 
"CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" 
     TCGA-CG-4462      TCGA-CG-4465      TCGA-CG-4466      TCGA-CG-4469 
"CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" 
     TCGA-CG-4472      TCGA-CG-4474      TCGA-CG-4477      TCGA-CG-5716 
"CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" 
     TCGA-CG-5717      TCGA-CG-5718      TCGA-CG-5719      TCGA-CG-5720 
"CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" 
     TCGA-CG-5721      TCGA-CG-5722      TCGA-CG-5723      TCGA-CG-5724 
"CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" 
     TCGA-CG-5725      TCGA-CG-5726      TCGA-CG-5727      TCGA-CG-5728 
"CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" 
     TCGA-CG-5730      TCGA-CG-5732      TCGA-CG-5733      TCGA-CG-5734 
"CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" 
     TCGA-D7-5577      TCGA-D7-5578      TCGA-D7-5579      TCGA-D7-6518 
"CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" 
     TCGA-D7-6519      TCGA-D7-6520      TCGA-D7-6521      TCGA-D7-6522 
  "CNBD1 MUTATED" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" 
     TCGA-D7-6524      TCGA-D7-6525      TCGA-D7-6526      TCGA-D7-6527 
"CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" 
     TCGA-D7-6528      TCGA-D7-6815      TCGA-D7-6817      TCGA-D7-6818 
  "CNBD1 MUTATED" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" 
     TCGA-D7-6820      TCGA-D7-6822      TCGA-EQ-5647      TCGA-F1-6177 
"CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" 
     TCGA-F1-6874 
"CNBD1 WILD-TYPE" 
[1] "Remove cluster labels:" "CNBD1 MUTATED"         
clus
  CNBD1 MUTATED CNBD1 WILD-TYPE 
              2              83 
     TCGA-B7-5816      TCGA-B7-5818      TCGA-BR-6452      TCGA-BR-6455 
"CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" 
     TCGA-BR-6457      TCGA-BR-6458      TCGA-BR-6564      TCGA-BR-6565 
"CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" 
     TCGA-BR-6566      TCGA-BR-6705      TCGA-BR-6706      TCGA-BR-6707 
"CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" 
     TCGA-BR-6709      TCGA-BR-6710      TCGA-BR-6801      TCGA-BR-6802 
"CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" 
     TCGA-BR-6803      TCGA-BR-6852      TCGA-CD-5798      TCGA-CD-5799 
"CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" 
     TCGA-CD-5800      TCGA-CD-5801      TCGA-CD-5802      TCGA-CD-5803 
"CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" 
     TCGA-CD-5813      TCGA-CG-4300      TCGA-CG-4301      TCGA-CG-4304 
"CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" 
     TCGA-CG-4305      TCGA-CG-4306      TCGA-CG-4436      TCGA-CG-4437 
"CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" 
     TCGA-CG-4438      TCGA-CG-4440      TCGA-CG-4441      TCGA-CG-4443 
"CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" 
     TCGA-CG-4444      TCGA-CG-4449      TCGA-CG-4455      TCGA-CG-4460 
"CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" 
     TCGA-CG-4462      TCGA-CG-4465      TCGA-CG-4466      TCGA-CG-4469 
"CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" 
     TCGA-CG-4472      TCGA-CG-4474      TCGA-CG-4477      TCGA-CG-5716 
"CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" 
     TCGA-CG-5717      TCGA-CG-5718      TCGA-CG-5719      TCGA-CG-5720 
"CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" 
     TCGA-CG-5721      TCGA-CG-5722      TCGA-CG-5723      TCGA-CG-5724 
"CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" 
     TCGA-CG-5725      TCGA-CG-5726      TCGA-CG-5727      TCGA-CG-5728 
"CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" 
     TCGA-CG-5730      TCGA-CG-5732      TCGA-CG-5733      TCGA-CG-5734 
"CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" 
     TCGA-D7-5577      TCGA-D7-5578      TCGA-D7-5579      TCGA-D7-6518 
"CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" 
     TCGA-D7-6520      TCGA-D7-6521      TCGA-D7-6522      TCGA-D7-6524 
"CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" 
     TCGA-D7-6525      TCGA-D7-6526      TCGA-D7-6527      TCGA-D7-6815 
"CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" 
     TCGA-D7-6817      TCGA-D7-6818      TCGA-D7-6820      TCGA-D7-6822 
"CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" 
     TCGA-EQ-5647      TCGA-F1-6177      TCGA-F1-6874 
"CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" 
D39V2, continuous
D39V3, binary
[1] "tbl2"
                 cls
clus              [,1] [,2]
  CNBD1 MUTATED      2    3
  CNBD1 WILD-TYPE   44   67
        clus
vv       CNBD1 MUTATED CNBD1 WILD-TYPE
  FEMALE             2              44
  MALE               3              67
D39V4, multiclass
D39V5, multiclass
[1] "Remove cluster labels:" "CNBD1 MUTATED"         
clus
  CNBD1 MUTATED CNBD1 WILD-TYPE 
              2             104 
     TCGA-B7-5816      TCGA-B7-5818      TCGA-BR-4183      TCGA-BR-4184 
"CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" 
     TCGA-BR-4201      TCGA-BR-4253      TCGA-BR-4255      TCGA-BR-4267 
"CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" 
     TCGA-BR-4279      TCGA-BR-4280      TCGA-BR-4292      TCGA-BR-4294 
"CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" 
     TCGA-BR-4357      TCGA-BR-4361      TCGA-BR-4363      TCGA-BR-4368 
"CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" 
     TCGA-BR-4371      TCGA-BR-6452      TCGA-BR-6453      TCGA-BR-6454 
"CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" 
     TCGA-BR-6455      TCGA-BR-6456      TCGA-BR-6457      TCGA-BR-6458 
"CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" 
     TCGA-BR-6564      TCGA-BR-6565      TCGA-BR-6566      TCGA-BR-6705 
"CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" 
     TCGA-BR-6706      TCGA-BR-6707      TCGA-BR-6709      TCGA-BR-6710 
"CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" 
     TCGA-BR-6801      TCGA-BR-6802      TCGA-BR-6803      TCGA-BR-6852 
"CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" 
     TCGA-CD-5798      TCGA-CD-5799      TCGA-CD-5800      TCGA-CD-5801 
"CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" 
     TCGA-CD-5802      TCGA-CD-5803      TCGA-CD-5813      TCGA-CG-4300 
"CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" 
     TCGA-CG-4301      TCGA-CG-4304      TCGA-CG-4305      TCGA-CG-4306 
"CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" 
     TCGA-CG-4436      TCGA-CG-4437      TCGA-CG-4438      TCGA-CG-4440 
"CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" 
     TCGA-CG-4441      TCGA-CG-4442      TCGA-CG-4443      TCGA-CG-4444 
"CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" 
     TCGA-CG-4449      TCGA-CG-4455      TCGA-CG-4460      TCGA-CG-4462 
"CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" 
     TCGA-CG-4465      TCGA-CG-4466      TCGA-CG-4469      TCGA-CG-4472 
"CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" 
     TCGA-CG-4474      TCGA-CG-4475      TCGA-CG-4476      TCGA-CG-4477 
"CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" 
     TCGA-CG-5716      TCGA-CG-5717      TCGA-CG-5718      TCGA-CG-5719 
"CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" 
     TCGA-CG-5720      TCGA-CG-5721      TCGA-CG-5722      TCGA-CG-5723 
"CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" 
     TCGA-CG-5724      TCGA-CG-5725      TCGA-CG-5726      TCGA-CG-5727 
"CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" 
     TCGA-CG-5728      TCGA-CG-5730      TCGA-CG-5732      TCGA-CG-5733 
"CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" 
     TCGA-CG-5734      TCGA-D7-5577      TCGA-D7-5578      TCGA-D7-5579 
"CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" 
     TCGA-D7-6518      TCGA-D7-6520      TCGA-D7-6521      TCGA-D7-6522 
"CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" 
     TCGA-D7-6524      TCGA-D7-6525      TCGA-D7-6526      TCGA-D7-6527 
"CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" 
     TCGA-D7-6815      TCGA-D7-6817      TCGA-D7-6818      TCGA-D7-6820 
"CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" 
     TCGA-D7-6822      TCGA-EQ-5647      TCGA-F1-6177      TCGA-F1-6874 
"CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" 
D39V6, multiclass
    clus
vv   CNBD1 MUTATED CNBD1 WILD-TYPE
  N0             1              34
  N1             2              37
  N2             0              19
  N3             0              12
D39V7, multiclass
    clus
vv   CNBD1 MUTATED CNBD1 WILD-TYPE
  M0             5              94
  M1             0              13
  MX             0               4
D39V8, multiclass
[1] "Remove cluster labels:" "CNBD1 MUTATED"         
clus
  CNBD1 MUTATED CNBD1 WILD-TYPE 
              2              98 
     TCGA-B7-5816      TCGA-B7-5818      TCGA-BR-4183      TCGA-BR-4184 
"CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" 
     TCGA-BR-4253      TCGA-BR-4255      TCGA-BR-4267      TCGA-BR-4279 
"CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" 
     TCGA-BR-4280      TCGA-BR-4361      TCGA-BR-4368      TCGA-BR-6452 
"CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" 
     TCGA-BR-6453      TCGA-BR-6454      TCGA-BR-6455      TCGA-BR-6456 
"CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" 
     TCGA-BR-6457      TCGA-BR-6458      TCGA-BR-6564      TCGA-BR-6565 
"CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" 
     TCGA-BR-6566      TCGA-BR-6705      TCGA-BR-6706      TCGA-BR-6707 
"CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" 
     TCGA-BR-6709      TCGA-BR-6710      TCGA-BR-6801      TCGA-BR-6802 
"CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" 
     TCGA-BR-6803      TCGA-BR-6852      TCGA-CD-5798      TCGA-CD-5799 
"CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" 
     TCGA-CD-5800      TCGA-CD-5801      TCGA-CD-5802      TCGA-CD-5803 
"CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" 
     TCGA-CD-5813      TCGA-CG-4300      TCGA-CG-4301      TCGA-CG-4304 
"CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" 
     TCGA-CG-4305      TCGA-CG-4306      TCGA-CG-4436      TCGA-CG-4437 
"CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" 
     TCGA-CG-4438      TCGA-CG-4440      TCGA-CG-4441      TCGA-CG-4442 
"CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" 
     TCGA-CG-4443      TCGA-CG-4444      TCGA-CG-4449      TCGA-CG-4455 
"CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" 
     TCGA-CG-4460      TCGA-CG-4462      TCGA-CG-4465      TCGA-CG-4466 
"CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" 
     TCGA-CG-4469      TCGA-CG-4472      TCGA-CG-4474      TCGA-CG-4475 
"CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" 
     TCGA-CG-4476      TCGA-CG-4477      TCGA-CG-5716      TCGA-CG-5717 
"CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" 
     TCGA-CG-5718      TCGA-CG-5719      TCGA-CG-5720      TCGA-CG-5721 
"CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" 
     TCGA-CG-5722      TCGA-CG-5723      TCGA-CG-5724      TCGA-CG-5725 
"CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" 
     TCGA-CG-5726      TCGA-CG-5727      TCGA-CG-5728      TCGA-CG-5730 
"CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" 
     TCGA-CG-5732      TCGA-CG-5733      TCGA-CG-5734      TCGA-D7-5577 
"CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" 
     TCGA-D7-5578      TCGA-D7-5579      TCGA-D7-6518      TCGA-D7-6520 
"CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" 
     TCGA-D7-6521      TCGA-D7-6522      TCGA-D7-6524      TCGA-D7-6525 
"CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" 
     TCGA-D7-6526      TCGA-D7-6527      TCGA-D7-6815      TCGA-D7-6817 
"CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" 
     TCGA-D7-6818      TCGA-D7-6820      TCGA-D7-6822      TCGA-EQ-5647 
"CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" 
     TCGA-F1-6177      TCGA-F1-6874 
"CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" 

Clustering(40) Variable = INO80E MUTATION ANALYSIS
D40V1, survival
                  sevent
clus2               0  1
  INO80E MUTATED    1  1
  INO80E WILD-TYPE 70 13
  INO80E MUTATED INO80E WILD-TYPE 
               2               83 
  INO80E MUTATED INO80E WILD-TYPE 
               1               13 
$`INO80E MUTATED`
TCGA-CG-4460 TCGA-CG-5721 
       21.99         5.98 

$`INO80E WILD-TYPE`
TCGA-B7-5816 TCGA-B7-5818 TCGA-BR-6452 TCGA-BR-6455 TCGA-BR-6457 TCGA-BR-6458 
        5.62         0.10         0.95         1.41         1.35         1.35 
TCGA-BR-6564 TCGA-BR-6565 TCGA-BR-6566 TCGA-BR-6705 TCGA-BR-6706 TCGA-BR-6707 
        0.82         0.62         0.62         1.71         2.17         0.99 
TCGA-BR-6709 TCGA-BR-6710 TCGA-BR-6801 TCGA-BR-6802 TCGA-BR-6803 TCGA-BR-6852 
        1.22         0.66         1.12         0.76         0.66         0.26 
TCGA-CD-5798 TCGA-CD-5799 TCGA-CD-5800 TCGA-CD-5801 TCGA-CD-5802 TCGA-CD-5803 
        0.82         0.69         0.36         0.49         0.30         0.07 
TCGA-CD-5813 TCGA-CG-4300 TCGA-CG-4301 TCGA-CG-4304 TCGA-CG-4305 TCGA-CG-4306 
        0.39        20.02         3.02        27.02        15.95         1.02 
TCGA-CG-4436 TCGA-CG-4437 TCGA-CG-4438 TCGA-CG-4440 TCGA-CG-4441 TCGA-CG-4443 
       52.96         8.05        54.05         4.01        14.01        29.98 
TCGA-CG-4444 TCGA-CG-4449 TCGA-CG-4455 TCGA-CG-4462 TCGA-CG-4465 TCGA-CG-4466 
       47.05        19.07        12.03         1.02         8.98        18.94 
TCGA-CG-4469 TCGA-CG-4472 TCGA-CG-4474 TCGA-CG-4477 TCGA-CG-5716 TCGA-CG-5717 
        7.07        12.00         1.02         1.02         1.02         6.94 
TCGA-CG-5718 TCGA-CG-5719 TCGA-CG-5720 TCGA-CG-5722 TCGA-CG-5723 TCGA-CG-5724 
        1.02         1.02         0.99         0.95        70.06        12.03 
TCGA-CG-5725 TCGA-CG-5726 TCGA-CG-5727 TCGA-CG-5728 TCGA-CG-5730 TCGA-CG-5732 
       15.02        28.96        31.04        65.10         4.01        55.04 
TCGA-CG-5733 TCGA-CG-5734 TCGA-D7-5577 TCGA-D7-5578 TCGA-D7-5579 TCGA-D7-6518 
       21.07         7.99         8.65         3.58         4.54         9.80 
TCGA-D7-6519 TCGA-D7-6520 TCGA-D7-6521 TCGA-D7-6522 TCGA-D7-6524 TCGA-D7-6525 
       15.65         9.63         8.19         6.90         0.69         5.95 
TCGA-D7-6526 TCGA-D7-6527 TCGA-D7-6528 TCGA-D7-6815 TCGA-D7-6817 TCGA-D7-6818 
        6.61         4.14         1.68         3.65         4.70         4.04 
TCGA-D7-6820 TCGA-D7-6822 TCGA-EQ-5647 TCGA-F1-6177 TCGA-F1-6874 
        2.93         4.27         0.62         6.54         2.01 

  INO80E MUTATED INO80E WILD-TYPE 
            5.98             0.07 
  INO80E MUTATED INO80E WILD-TYPE 
           21.99            70.06 
  INO80E MUTATED INO80E WILD-TYPE 
          13.985            4.010 
[1] "6.0 - 22.0 (14.0)" "0.1 - 70.1 (4.0)" 
      TCGA-B7-5816       TCGA-B7-5818       TCGA-BR-6452       TCGA-BR-6455 
"INO80E WILD-TYPE" "INO80E WILD-TYPE" "INO80E WILD-TYPE" "INO80E WILD-TYPE" 
      TCGA-BR-6457       TCGA-BR-6458       TCGA-BR-6564       TCGA-BR-6565 
"INO80E WILD-TYPE" "INO80E WILD-TYPE" "INO80E WILD-TYPE" "INO80E WILD-TYPE" 
      TCGA-BR-6566       TCGA-BR-6705       TCGA-BR-6706       TCGA-BR-6707 
"INO80E WILD-TYPE" "INO80E WILD-TYPE" "INO80E WILD-TYPE" "INO80E WILD-TYPE" 
      TCGA-BR-6709       TCGA-BR-6710       TCGA-BR-6801       TCGA-BR-6802 
"INO80E WILD-TYPE" "INO80E WILD-TYPE" "INO80E WILD-TYPE" "INO80E WILD-TYPE" 
      TCGA-BR-6803       TCGA-BR-6852       TCGA-CD-5798       TCGA-CD-5799 
"INO80E WILD-TYPE" "INO80E WILD-TYPE" "INO80E WILD-TYPE" "INO80E WILD-TYPE" 
      TCGA-CD-5800       TCGA-CD-5801       TCGA-CD-5802       TCGA-CD-5803 
"INO80E WILD-TYPE" "INO80E WILD-TYPE" "INO80E WILD-TYPE" "INO80E WILD-TYPE" 
      TCGA-CD-5813       TCGA-CG-4300       TCGA-CG-4301       TCGA-CG-4304 
"INO80E WILD-TYPE" "INO80E WILD-TYPE" "INO80E WILD-TYPE" "INO80E WILD-TYPE" 
      TCGA-CG-4305       TCGA-CG-4306       TCGA-CG-4436       TCGA-CG-4437 
"INO80E WILD-TYPE" "INO80E WILD-TYPE" "INO80E WILD-TYPE" "INO80E WILD-TYPE" 
      TCGA-CG-4438       TCGA-CG-4440       TCGA-CG-4441       TCGA-CG-4443 
"INO80E WILD-TYPE" "INO80E WILD-TYPE" "INO80E WILD-TYPE" "INO80E WILD-TYPE" 
      TCGA-CG-4444       TCGA-CG-4449       TCGA-CG-4455       TCGA-CG-4460 
"INO80E WILD-TYPE" "INO80E WILD-TYPE" "INO80E WILD-TYPE"   "INO80E MUTATED" 
      TCGA-CG-4462       TCGA-CG-4465       TCGA-CG-4466       TCGA-CG-4469 
"INO80E WILD-TYPE" "INO80E WILD-TYPE" "INO80E WILD-TYPE" "INO80E WILD-TYPE" 
      TCGA-CG-4472       TCGA-CG-4474       TCGA-CG-4477       TCGA-CG-5716 
"INO80E WILD-TYPE" "INO80E WILD-TYPE" "INO80E WILD-TYPE" "INO80E WILD-TYPE" 
      TCGA-CG-5717       TCGA-CG-5718       TCGA-CG-5719       TCGA-CG-5720 
"INO80E WILD-TYPE" "INO80E WILD-TYPE" "INO80E WILD-TYPE" "INO80E WILD-TYPE" 
      TCGA-CG-5721       TCGA-CG-5722       TCGA-CG-5723       TCGA-CG-5724 
  "INO80E MUTATED" "INO80E WILD-TYPE" "INO80E WILD-TYPE" "INO80E WILD-TYPE" 
      TCGA-CG-5725       TCGA-CG-5726       TCGA-CG-5727       TCGA-CG-5728 
"INO80E WILD-TYPE" "INO80E WILD-TYPE" "INO80E WILD-TYPE" "INO80E WILD-TYPE" 
      TCGA-CG-5730       TCGA-CG-5732       TCGA-CG-5733       TCGA-CG-5734 
"INO80E WILD-TYPE" "INO80E WILD-TYPE" "INO80E WILD-TYPE" "INO80E WILD-TYPE" 
      TCGA-D7-5577       TCGA-D7-5578       TCGA-D7-5579       TCGA-D7-6518 
"INO80E WILD-TYPE" "INO80E WILD-TYPE" "INO80E WILD-TYPE" "INO80E WILD-TYPE" 
      TCGA-D7-6519       TCGA-D7-6520       TCGA-D7-6521       TCGA-D7-6522 
"INO80E WILD-TYPE" "INO80E WILD-TYPE" "INO80E WILD-TYPE" "INO80E WILD-TYPE" 
      TCGA-D7-6524       TCGA-D7-6525       TCGA-D7-6526       TCGA-D7-6527 
"INO80E WILD-TYPE" "INO80E WILD-TYPE" "INO80E WILD-TYPE" "INO80E WILD-TYPE" 
      TCGA-D7-6528       TCGA-D7-6815       TCGA-D7-6817       TCGA-D7-6818 
"INO80E WILD-TYPE" "INO80E WILD-TYPE" "INO80E WILD-TYPE" "INO80E WILD-TYPE" 
      TCGA-D7-6820       TCGA-D7-6822       TCGA-EQ-5647       TCGA-F1-6177 
"INO80E WILD-TYPE" "INO80E WILD-TYPE" "INO80E WILD-TYPE" "INO80E WILD-TYPE" 
      TCGA-F1-6874 
"INO80E WILD-TYPE" 
      TCGA-B7-5816       TCGA-B7-5818       TCGA-BR-6452       TCGA-BR-6455 
"INO80E WILD-TYPE" "INO80E WILD-TYPE" "INO80E WILD-TYPE" "INO80E WILD-TYPE" 
      TCGA-BR-6457       TCGA-BR-6458       TCGA-BR-6564       TCGA-BR-6565 
"INO80E WILD-TYPE" "INO80E WILD-TYPE" "INO80E WILD-TYPE" "INO80E WILD-TYPE" 
      TCGA-BR-6566       TCGA-BR-6705       TCGA-BR-6706       TCGA-BR-6707 
"INO80E WILD-TYPE" "INO80E WILD-TYPE" "INO80E WILD-TYPE" "INO80E WILD-TYPE" 
      TCGA-BR-6709       TCGA-BR-6710       TCGA-BR-6801       TCGA-BR-6802 
"INO80E WILD-TYPE" "INO80E WILD-TYPE" "INO80E WILD-TYPE" "INO80E WILD-TYPE" 
      TCGA-BR-6803       TCGA-BR-6852       TCGA-CD-5798       TCGA-CD-5799 
"INO80E WILD-TYPE" "INO80E WILD-TYPE" "INO80E WILD-TYPE" "INO80E WILD-TYPE" 
      TCGA-CD-5800       TCGA-CD-5801       TCGA-CD-5802       TCGA-CD-5803 
"INO80E WILD-TYPE" "INO80E WILD-TYPE" "INO80E WILD-TYPE" "INO80E WILD-TYPE" 
      TCGA-CD-5813       TCGA-CG-4300       TCGA-CG-4301       TCGA-CG-4304 
"INO80E WILD-TYPE" "INO80E WILD-TYPE" "INO80E WILD-TYPE" "INO80E WILD-TYPE" 
      TCGA-CG-4305       TCGA-CG-4306       TCGA-CG-4436       TCGA-CG-4437 
"INO80E WILD-TYPE" "INO80E WILD-TYPE" "INO80E WILD-TYPE" "INO80E WILD-TYPE" 
      TCGA-CG-4438       TCGA-CG-4440       TCGA-CG-4441       TCGA-CG-4443 
"INO80E WILD-TYPE" "INO80E WILD-TYPE" "INO80E WILD-TYPE" "INO80E WILD-TYPE" 
      TCGA-CG-4444       TCGA-CG-4449       TCGA-CG-4455       TCGA-CG-4460 
"INO80E WILD-TYPE" "INO80E WILD-TYPE" "INO80E WILD-TYPE"   "INO80E MUTATED" 
      TCGA-CG-4462       TCGA-CG-4465       TCGA-CG-4466       TCGA-CG-4469 
"INO80E WILD-TYPE" "INO80E WILD-TYPE" "INO80E WILD-TYPE" "INO80E WILD-TYPE" 
      TCGA-CG-4472       TCGA-CG-4474       TCGA-CG-4477       TCGA-CG-5716 
"INO80E WILD-TYPE" "INO80E WILD-TYPE" "INO80E WILD-TYPE" "INO80E WILD-TYPE" 
      TCGA-CG-5717       TCGA-CG-5718       TCGA-CG-5719       TCGA-CG-5720 
"INO80E WILD-TYPE" "INO80E WILD-TYPE" "INO80E WILD-TYPE" "INO80E WILD-TYPE" 
      TCGA-CG-5721       TCGA-CG-5722       TCGA-CG-5723       TCGA-CG-5724 
  "INO80E MUTATED" "INO80E WILD-TYPE" "INO80E WILD-TYPE" "INO80E WILD-TYPE" 
      TCGA-CG-5725       TCGA-CG-5726       TCGA-CG-5727       TCGA-CG-5728 
"INO80E WILD-TYPE" "INO80E WILD-TYPE" "INO80E WILD-TYPE" "INO80E WILD-TYPE" 
      TCGA-CG-5730       TCGA-CG-5732       TCGA-CG-5733       TCGA-CG-5734 
"INO80E WILD-TYPE" "INO80E WILD-TYPE" "INO80E WILD-TYPE" "INO80E WILD-TYPE" 
      TCGA-D7-5577       TCGA-D7-5578       TCGA-D7-5579       TCGA-D7-6518 
"INO80E WILD-TYPE" "INO80E WILD-TYPE" "INO80E WILD-TYPE" "INO80E WILD-TYPE" 
      TCGA-D7-6519       TCGA-D7-6520       TCGA-D7-6521       TCGA-D7-6522 
"INO80E WILD-TYPE" "INO80E WILD-TYPE" "INO80E WILD-TYPE" "INO80E WILD-TYPE" 
      TCGA-D7-6524       TCGA-D7-6525       TCGA-D7-6526       TCGA-D7-6527 
"INO80E WILD-TYPE" "INO80E WILD-TYPE" "INO80E WILD-TYPE" "INO80E WILD-TYPE" 
      TCGA-D7-6528       TCGA-D7-6815       TCGA-D7-6817       TCGA-D7-6818 
"INO80E WILD-TYPE" "INO80E WILD-TYPE" "INO80E WILD-TYPE" "INO80E WILD-TYPE" 
      TCGA-D7-6820       TCGA-D7-6822       TCGA-EQ-5647       TCGA-F1-6177 
"INO80E WILD-TYPE" "INO80E WILD-TYPE" "INO80E WILD-TYPE" "INO80E WILD-TYPE" 
      TCGA-F1-6874 
"INO80E WILD-TYPE" 
      TCGA-B7-5816       TCGA-B7-5818       TCGA-BR-6452       TCGA-BR-6455 
"INO80E WILD-TYPE" "INO80E WILD-TYPE" "INO80E WILD-TYPE" "INO80E WILD-TYPE" 
      TCGA-BR-6457       TCGA-BR-6458       TCGA-BR-6564       TCGA-BR-6565 
"INO80E WILD-TYPE" "INO80E WILD-TYPE" "INO80E WILD-TYPE" "INO80E WILD-TYPE" 
      TCGA-BR-6566       TCGA-BR-6705       TCGA-BR-6706       TCGA-BR-6707 
"INO80E WILD-TYPE" "INO80E WILD-TYPE" "INO80E WILD-TYPE" "INO80E WILD-TYPE" 
      TCGA-BR-6709       TCGA-BR-6710       TCGA-BR-6801       TCGA-BR-6802 
"INO80E WILD-TYPE" "INO80E WILD-TYPE" "INO80E WILD-TYPE" "INO80E WILD-TYPE" 
      TCGA-BR-6803       TCGA-BR-6852       TCGA-CD-5798       TCGA-CD-5799 
"INO80E WILD-TYPE" "INO80E WILD-TYPE" "INO80E WILD-TYPE" "INO80E WILD-TYPE" 
      TCGA-CD-5800       TCGA-CD-5801       TCGA-CD-5802       TCGA-CD-5803 
"INO80E WILD-TYPE" "INO80E WILD-TYPE" "INO80E WILD-TYPE" "INO80E WILD-TYPE" 
      TCGA-CD-5813       TCGA-CG-4300       TCGA-CG-4301       TCGA-CG-4304 
"INO80E WILD-TYPE" "INO80E WILD-TYPE" "INO80E WILD-TYPE" "INO80E WILD-TYPE" 
      TCGA-CG-4305       TCGA-CG-4306       TCGA-CG-4436       TCGA-CG-4437 
"INO80E WILD-TYPE" "INO80E WILD-TYPE" "INO80E WILD-TYPE" "INO80E WILD-TYPE" 
      TCGA-CG-4438       TCGA-CG-4440       TCGA-CG-4441       TCGA-CG-4443 
"INO80E WILD-TYPE" "INO80E WILD-TYPE" "INO80E WILD-TYPE" "INO80E WILD-TYPE" 
      TCGA-CG-4444       TCGA-CG-4449       TCGA-CG-4455       TCGA-CG-4460 
"INO80E WILD-TYPE" "INO80E WILD-TYPE" "INO80E WILD-TYPE"   "INO80E MUTATED" 
      TCGA-CG-4462       TCGA-CG-4465       TCGA-CG-4466       TCGA-CG-4469 
"INO80E WILD-TYPE" "INO80E WILD-TYPE" "INO80E WILD-TYPE" "INO80E WILD-TYPE" 
      TCGA-CG-4472       TCGA-CG-4474       TCGA-CG-4477       TCGA-CG-5716 
"INO80E WILD-TYPE" "INO80E WILD-TYPE" "INO80E WILD-TYPE" "INO80E WILD-TYPE" 
      TCGA-CG-5717       TCGA-CG-5718       TCGA-CG-5719       TCGA-CG-5720 
"INO80E WILD-TYPE" "INO80E WILD-TYPE" "INO80E WILD-TYPE" "INO80E WILD-TYPE" 
      TCGA-CG-5721       TCGA-CG-5722       TCGA-CG-5723       TCGA-CG-5724 
  "INO80E MUTATED" "INO80E WILD-TYPE" "INO80E WILD-TYPE" "INO80E WILD-TYPE" 
      TCGA-CG-5725       TCGA-CG-5726       TCGA-CG-5727       TCGA-CG-5728 
"INO80E WILD-TYPE" "INO80E WILD-TYPE" "INO80E WILD-TYPE" "INO80E WILD-TYPE" 
      TCGA-CG-5730       TCGA-CG-5732       TCGA-CG-5733       TCGA-CG-5734 
"INO80E WILD-TYPE" "INO80E WILD-TYPE" "INO80E WILD-TYPE" "INO80E WILD-TYPE" 
      TCGA-D7-5577       TCGA-D7-5578       TCGA-D7-5579       TCGA-D7-6518 
"INO80E WILD-TYPE" "INO80E WILD-TYPE" "INO80E WILD-TYPE" "INO80E WILD-TYPE" 
      TCGA-D7-6519       TCGA-D7-6520       TCGA-D7-6521       TCGA-D7-6522 
"INO80E WILD-TYPE" "INO80E WILD-TYPE" "INO80E WILD-TYPE" "INO80E WILD-TYPE" 
      TCGA-D7-6524       TCGA-D7-6525       TCGA-D7-6526       TCGA-D7-6527 
"INO80E WILD-TYPE" "INO80E WILD-TYPE" "INO80E WILD-TYPE" "INO80E WILD-TYPE" 
      TCGA-D7-6528       TCGA-D7-6815       TCGA-D7-6817       TCGA-D7-6818 
"INO80E WILD-TYPE" "INO80E WILD-TYPE" "INO80E WILD-TYPE" "INO80E WILD-TYPE" 
      TCGA-D7-6820       TCGA-D7-6822       TCGA-EQ-5647       TCGA-F1-6177 
"INO80E WILD-TYPE" "INO80E WILD-TYPE" "INO80E WILD-TYPE" "INO80E WILD-TYPE" 
      TCGA-F1-6874 
"INO80E WILD-TYPE" 
[1] "Remove cluster labels:" "INO80E MUTATED"        
clus
  INO80E MUTATED INO80E WILD-TYPE 
               2               83 
      TCGA-B7-5816       TCGA-B7-5818       TCGA-BR-6452       TCGA-BR-6455 
"INO80E WILD-TYPE" "INO80E WILD-TYPE" "INO80E WILD-TYPE" "INO80E WILD-TYPE" 
      TCGA-BR-6457       TCGA-BR-6458       TCGA-BR-6564       TCGA-BR-6565 
"INO80E WILD-TYPE" "INO80E WILD-TYPE" "INO80E WILD-TYPE" "INO80E WILD-TYPE" 
      TCGA-BR-6566       TCGA-BR-6705       TCGA-BR-6706       TCGA-BR-6707 
"INO80E WILD-TYPE" "INO80E WILD-TYPE" "INO80E WILD-TYPE" "INO80E WILD-TYPE" 
      TCGA-BR-6709       TCGA-BR-6710       TCGA-BR-6801       TCGA-BR-6802 
"INO80E WILD-TYPE" "INO80E WILD-TYPE" "INO80E WILD-TYPE" "INO80E WILD-TYPE" 
      TCGA-BR-6803       TCGA-BR-6852       TCGA-CD-5798       TCGA-CD-5799 
"INO80E WILD-TYPE" "INO80E WILD-TYPE" "INO80E WILD-TYPE" "INO80E WILD-TYPE" 
      TCGA-CD-5800       TCGA-CD-5801       TCGA-CD-5802       TCGA-CD-5803 
"INO80E WILD-TYPE" "INO80E WILD-TYPE" "INO80E WILD-TYPE" "INO80E WILD-TYPE" 
      TCGA-CD-5813       TCGA-CG-4300       TCGA-CG-4301       TCGA-CG-4304 
"INO80E WILD-TYPE" "INO80E WILD-TYPE" "INO80E WILD-TYPE" "INO80E WILD-TYPE" 
      TCGA-CG-4305       TCGA-CG-4306       TCGA-CG-4436       TCGA-CG-4437 
"INO80E WILD-TYPE" "INO80E WILD-TYPE" "INO80E WILD-TYPE" "INO80E WILD-TYPE" 
      TCGA-CG-4438       TCGA-CG-4440       TCGA-CG-4441       TCGA-CG-4443 
"INO80E WILD-TYPE" "INO80E WILD-TYPE" "INO80E WILD-TYPE" "INO80E WILD-TYPE" 
      TCGA-CG-4444       TCGA-CG-4449       TCGA-CG-4455       TCGA-CG-4462 
"INO80E WILD-TYPE" "INO80E WILD-TYPE" "INO80E WILD-TYPE" "INO80E WILD-TYPE" 
      TCGA-CG-4465       TCGA-CG-4466       TCGA-CG-4469       TCGA-CG-4472 
"INO80E WILD-TYPE" "INO80E WILD-TYPE" "INO80E WILD-TYPE" "INO80E WILD-TYPE" 
      TCGA-CG-4474       TCGA-CG-4477       TCGA-CG-5716       TCGA-CG-5717 
"INO80E WILD-TYPE" "INO80E WILD-TYPE" "INO80E WILD-TYPE" "INO80E WILD-TYPE" 
      TCGA-CG-5718       TCGA-CG-5719       TCGA-CG-5720       TCGA-CG-5722 
"INO80E WILD-TYPE" "INO80E WILD-TYPE" "INO80E WILD-TYPE" "INO80E WILD-TYPE" 
      TCGA-CG-5723       TCGA-CG-5724       TCGA-CG-5725       TCGA-CG-5726 
"INO80E WILD-TYPE" "INO80E WILD-TYPE" "INO80E WILD-TYPE" "INO80E WILD-TYPE" 
      TCGA-CG-5727       TCGA-CG-5728       TCGA-CG-5730       TCGA-CG-5732 
"INO80E WILD-TYPE" "INO80E WILD-TYPE" "INO80E WILD-TYPE" "INO80E WILD-TYPE" 
      TCGA-CG-5733       TCGA-CG-5734       TCGA-D7-5577       TCGA-D7-5578 
"INO80E WILD-TYPE" "INO80E WILD-TYPE" "INO80E WILD-TYPE" "INO80E WILD-TYPE" 
      TCGA-D7-5579       TCGA-D7-6518       TCGA-D7-6519       TCGA-D7-6520 
"INO80E WILD-TYPE" "INO80E WILD-TYPE" "INO80E WILD-TYPE" "INO80E WILD-TYPE" 
      TCGA-D7-6521       TCGA-D7-6522       TCGA-D7-6524       TCGA-D7-6525 
"INO80E WILD-TYPE" "INO80E WILD-TYPE" "INO80E WILD-TYPE" "INO80E WILD-TYPE" 
      TCGA-D7-6526       TCGA-D7-6527       TCGA-D7-6528       TCGA-D7-6815 
"INO80E WILD-TYPE" "INO80E WILD-TYPE" "INO80E WILD-TYPE" "INO80E WILD-TYPE" 
      TCGA-D7-6817       TCGA-D7-6818       TCGA-D7-6820       TCGA-D7-6822 
"INO80E WILD-TYPE" "INO80E WILD-TYPE" "INO80E WILD-TYPE" "INO80E WILD-TYPE" 
      TCGA-EQ-5647       TCGA-F1-6177       TCGA-F1-6874 
"INO80E WILD-TYPE" "INO80E WILD-TYPE" "INO80E WILD-TYPE" 
D40V2, continuous
D40V3, binary
[1] "tbl2"
                  cls
clus               [,1] [,2]
  INO80E MUTATED      4    1
  INO80E WILD-TYPE   42   69
        clus
vv       INO80E MUTATED INO80E WILD-TYPE
  FEMALE              4               42
  MALE                1               69
D40V4, multiclass
D40V5, multiclass
    clus
vv   INO80E MUTATED INO80E WILD-TYPE
  T1              0                4
  T2              0               46
  T3              0               41
  T4              4               11
D40V6, multiclass
    clus
vv   INO80E MUTATED INO80E WILD-TYPE
  N0              1               34
  N1              3               36
  N2              1               18
  N3              0               12
D40V7, multiclass
    clus
vv   INO80E MUTATED INO80E WILD-TYPE
  M0              4               95
  M1              1               12
  MX              0                4
D40V8, multiclass
     clus
vv    INO80E MUTATED INO80E WILD-TYPE
  I                0               18
  II               0               32
  III              1               28
  IV               3               18
                 V1.D                    V2                    V3 
      "Time to Death"                 "AGE"              "GENDER" 
                   V4                    V5                    V6 
  "HISTOLOGICAL.TYPE"         "PATHOLOGY.T"         "PATHOLOGY.N" 
                   V7                    V8 
"PATHOLOGICSPREAD(M)"         "TUMOR.STAGE" 
> q(save="no")
