
R version 2.10.1 (2009-12-14)
Copyright (C) 2009 The R Foundation for Statistical Computing
ISBN 3-900051-07-0

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> source("/xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/Correlate_Clinical_Clusters_onlysig.75.4002/Clusters2ClinicalAnalysis_nozzle_onlysig.R")
> result <- main("/xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/Correlate_Clinical_Clusters_onlysig.75.4002/", "-nF=/xchip/tcga/Tools/Nozzle/v1.current", "-iD=/xchip/cga/gdac-prod/tcga-gdac/jobResults/GDAC_MergedClusteringPipeline/THCA-TP/2404532/1.GDAC_mergedClustering.Finished/THCA-TP.mergedcluster.txt", "-iC=/xchip/cga/gdac-prod/tcga-gdac/jobResults/GDAC_clinicalDataPickerPipeline/THCA-TP/2332309/1.GDAC_clinicalDataPicker.Finished/THCA-TP.clin.merged.picked.txt", "-fF=ALL", "-fC=3", "-fH=5", "-fW=9", "-fP=OUT", "-cP=0.05", "-cQ=0.25", "-MF=ALL", "-oT=", "-nV=Nozzle.R1", "-OP=AGGREGRATED_CLUSTER", "-iT=", "-iX=")
[1] "nver"          "-nV=Nozzle.R1"
[1] "nfn"                                 "/xchip/tcga/Tools/Nozzle/v1.current"
[1] "Nozzle.R1"
[1] "successfully load Nozzle.R1"
[1] "ofn"  "-oT="
[1] "opt"                     "-OP=AGGREGRATED_CLUSTER"
[1] "tl"   "-iT="
[1] "dx"   "-iX="
[1] "opt"                 "AGGREGRATED_CLUSTER"
[1] "dx" ""  

nPatients in clinical file=218, in cluster file=436, common to both=218
[1]   8 218
[1] "CN_CNMF"
[1] 3
  1   2   3 
 18 161  35 
  1   2   3 
 18 161  35 
[1] "METHLYATION_CNMF"
[1] 3
  1   2   3 
 72  30 116 
  1   2   3 
 72  30 116 
[1] "RPPA_CNMF"
[1] 3
 1  2  3 
43 55 57 
 1  2  3 
43 55 57 
[1] "RPPA_CHIERARCHICAL"
[1] 3
 1  2  3 
23 66 66 
 1  2  3 
23 66 66 
[1] "MRNASEQ_CNMF"
[1] 3
 1  2  3  4 
64 22 47 65 
 1  2  3  4 
64 22 47 65 
[1] "MRNASEQ_CHIERARCHICAL"
[1] 3
 1  2  3 
89 34 75 
 1  2  3 
89 34 75 
[1] "MIRSEQ_CNMF"
[1] 3
 1  2  3 
70 84 56 
 1  2  3 
70 84 56 
[1] "MIRSEQ_CHIERARCHICAL"
[1] 3
 1  2  3 
62 63 85 
 1  2  3 
62 63 85 
[1] "data2feature, selection=ALL"
 [1] "YEARSTOBIRTH"                          
 [2] "DAYSTODEATH"                           
 [3] "DAYSTOLASTFOLLOWUP"                    
 [4] "VITALSTATUS"                           
 [5] "DCCUPLOADDATE"                         
 [6] "PRIMARYSITEOFDESEASE"                  
 [7] "GENDER"                                
 [8] "DATEOFINITIALPATHOLOGICDIAGNOSIS"      
 [9] "HISTOLOGICALTYPE"                      
[10] "RADIATIONS.RADIATION.REGIMENINDICATION"
[11] "RADIATIONEXPOSURE"                     
[12] "BATCHNUMBER"                           

Input Data has 12 rows and 218 columns.

[1] "Batch" "12"   
[1] "Last Follow UP"
TCGA-BJ-A0YZ TCGA-BJ-A0Z0 TCGA-BJ-A0Z2 TCGA-BJ-A0Z3 TCGA-BJ-A0Z5 TCGA-BJ-A0Z9 
         479          356          232          182          197          251 
TCGA-BJ-A0ZA TCGA-BJ-A0ZB TCGA-BJ-A0ZC TCGA-BJ-A0ZE TCGA-BJ-A0ZF TCGA-BJ-A0ZG 
         264          122          183          237          210          230 
TCGA-BJ-A0ZH TCGA-BJ-A0ZJ TCGA-BJ-A18Y TCGA-BJ-A190 TCGA-BJ-A191 TCGA-BJ-A192 
          22          152           85           13          235          246 
TCGA-BJ-A28R TCGA-BJ-A28T TCGA-BJ-A28V TCGA-BJ-A3PR TCGA-BJ-A3PT TCGA-CE-A13K 
         148           84          155          244          367           16 
TCGA-CE-A27D TCGA-CE-A3MD TCGA-CE-A3ME TCGA-DE-A0XZ TCGA-DE-A0Y2 TCGA-DE-A0Y3 
           3            6            7          402          231          952 
TCGA-DE-A2OL TCGA-DE-A3KN TCGA-DJ-A13M TCGA-DJ-A13O TCGA-DJ-A13P TCGA-DJ-A13R 
         161          286          274          215         4199           92 
TCGA-DJ-A13S TCGA-DJ-A13T TCGA-DJ-A13U TCGA-DJ-A13V TCGA-DJ-A13W TCGA-DJ-A13X 
         265          758          393          362          454          243 
TCGA-DJ-A1QD TCGA-DJ-A1QE TCGA-DJ-A1QF TCGA-DJ-A1QG TCGA-DJ-A1QH TCGA-DJ-A1QI 
         334         3041          549          212          243          151 
TCGA-DJ-A1QL TCGA-DJ-A1QM TCGA-DJ-A1QN TCGA-DJ-A1QO TCGA-DJ-A1QQ TCGA-DJ-A2PN 
         212           30          273           31          181          304 
TCGA-DJ-A2PO TCGA-DJ-A2PP TCGA-DJ-A2PQ TCGA-DJ-A2PR TCGA-DJ-A2PS TCGA-DJ-A2PT 
         242          152          623          318           59          292 
TCGA-DJ-A2PU TCGA-DJ-A2PV TCGA-DJ-A2PW TCGA-DJ-A2PX TCGA-DJ-A2PY TCGA-DJ-A2PZ 
         312          242          234          153          267          256 
TCGA-DJ-A2Q0 TCGA-DJ-A2Q1 TCGA-DJ-A2Q2 TCGA-DJ-A2Q3 TCGA-DJ-A2Q4 TCGA-DJ-A2Q5 
         247          284          206          280          287          301 
TCGA-DJ-A2Q6 TCGA-DJ-A2Q7 TCGA-DJ-A2Q8 TCGA-DJ-A2Q9 TCGA-DJ-A2QA TCGA-DJ-A2QB 
         262          291          215          315          378          330 
TCGA-DJ-A2QC TCGA-DJ-A3UN TCGA-DJ-A3US TCGA-DJ-A3UY TCGA-DO-A1JZ TCGA-DO-A1K0 
         304          380          630          405         1225           93 
TCGA-E3-A3DY TCGA-E3-A3DZ TCGA-E3-A3E0 TCGA-E3-A3E1 TCGA-E3-A3E2 TCGA-E3-A3E3 
         945          365         1544         1222         1421          635 
TCGA-E3-A3E5 TCGA-E8-A242 TCGA-E8-A2EA TCGA-E8-A2JQ TCGA-E8-A3X7 TCGA-E8-A413 
         427           34           11           NA           45           10 
TCGA-E8-A414 TCGA-E8-A415 TCGA-E8-A416 TCGA-E8-A417 TCGA-E8-A418 TCGA-EM-A1CS 
           7            5           22            8           45          580 
TCGA-EM-A1CT TCGA-EM-A1CU TCGA-EM-A1CV TCGA-EM-A1CW TCGA-EM-A1YA TCGA-EM-A1YB 
         153          214           NA          245          217          284 
TCGA-EM-A1YC TCGA-EM-A1YD TCGA-EM-A1YE TCGA-EM-A22I TCGA-EM-A22J TCGA-EM-A22K 
        1421         1209          650           81          207          202 
TCGA-EM-A22L TCGA-EM-A22M TCGA-EM-A22N TCGA-EM-A22O TCGA-EM-A22P TCGA-EM-A22Q 
         138          106          209          189          174          192 
TCGA-EM-A2CJ TCGA-EM-A2CK TCGA-EM-A2CL TCGA-EM-A2CM TCGA-EM-A2CN TCGA-EM-A2CO 
         348          249          209          357          344          183 
TCGA-EM-A2CP TCGA-EM-A2CQ TCGA-EM-A2CR TCGA-EM-A2CS TCGA-EM-A2CT TCGA-EM-A2CU 
          90          199          218          284          319          176 
TCGA-ET-A25G TCGA-ET-A25I TCGA-ET-A25J TCGA-ET-A25K TCGA-ET-A25L TCGA-ET-A25M 
        1088           10          903          589          450          375 
TCGA-ET-A25N TCGA-ET-A25O TCGA-ET-A25P TCGA-ET-A25R TCGA-ET-A2MY TCGA-ET-A2MZ 
          75          135           15          621          579          373 
TCGA-ET-A2N0 TCGA-ET-A2N1 TCGA-ET-A2N4 TCGA-ET-A2N5 TCGA-ET-A39I TCGA-ET-A39J 
        1049          449           43         1182            9          362 
TCGA-ET-A39K TCGA-ET-A39L TCGA-ET-A39M TCGA-ET-A39N TCGA-ET-A39O TCGA-ET-A39P 
        2058           59         2266         2535         1309          406 
TCGA-ET-A39R TCGA-ET-A39S TCGA-ET-A39T TCGA-ET-A3BN TCGA-ET-A3BO TCGA-ET-A3BP 
        1413           20          237           51          177          127 
TCGA-ET-A3BQ TCGA-ET-A3BS TCGA-ET-A3BT TCGA-ET-A3BU TCGA-ET-A3BV TCGA-ET-A3BW 
          74          168          752           39           56           72 
TCGA-ET-A3BX TCGA-ET-A3DO TCGA-ET-A3DP TCGA-ET-A3DQ TCGA-ET-A3DR TCGA-ET-A3DS 
         137         2095         1536         1366           65            9 
TCGA-ET-A3DT TCGA-ET-A3DU TCGA-ET-A3DV TCGA-ET-A3DW TCGA-FE-A22Z TCGA-FE-A230 
         145          138         3424          751         1565         1442 
TCGA-FE-A231 TCGA-FE-A232 TCGA-FE-A233 TCGA-FE-A234 TCGA-FE-A235 TCGA-FE-A236 
         374         1346          751         1333         3130         2031 
TCGA-FE-A237 TCGA-FE-A238 TCGA-FE-A239 TCGA-FE-A23A TCGA-FE-A3PA TCGA-FE-A3PB 
        2292         1215           NA         1907         2872         2589 
TCGA-FE-A3PC TCGA-FE-A3PD TCGA-FY-A2QD TCGA-FY-A3BL TCGA-FY-A3I5 TCGA-FY-A3NM 
        1868         1913           38           35           50           30 
TCGA-FY-A3NN TCGA-FY-A3NP TCGA-FY-A3ON TCGA-FY-A3R6 TCGA-FY-A3R7 TCGA-FY-A3R9 
          NA           18           46           23            1           66 
TCGA-FY-A3RA TCGA-GE-A2C6 TCGA-H2-A26U TCGA-H2-A2K9 TCGA-H2-A3RH TCGA-H2-A3RI 
         278          206          106          145          148           90 
TCGA-IM-A3EB TCGA-IM-A3ED TCGA-IM-A3U2 TCGA-IM-A3U3 TCGA-J8-A3NZ TCGA-J8-A3O0 
        1070          939           80           99           68          392 
TCGA-J8-A3O1 TCGA-J8-A3O2 
         415           41 
Variable 1:'AGE':	nDistinctValues=65,	numeric=TRUE,	binary=FALSE,	exclude=FALSE.
Variable 2:'DAYSTODEATH':	nDistinctValues=1,	numeric=FALSE,	binary=FALSE,	exclude=TRUE.
Variable 3:'DAYSTOLASTFOLLOWUP':	nDistinctValues=187,	numeric=TRUE,	binary=FALSE,	exclude=TRUE.
Variable 4:'VITALSTATUS':	nDistinctValues=2,	numeric=TRUE,	binary=TRUE,	exclude=TRUE.
Variable 5:'DCCUPLOADDAY':	nDistinctValues=4,	numeric=FALSE,	binary=FALSE,	exclude=TRUE.
Variable 6:'PRIMARY.SITE.OF.DISEASE':	nDistinctValues=1,	numeric=FALSE,	binary=FALSE,	exclude=TRUE.
Variable 7:'GENDER':	nDistinctValues=2,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 8:'DAYOFINITIALPATHOLOGICDIAGNOSIS':	nDistinctValues=13,	numeric=TRUE,	binary=FALSE,	exclude=TRUE.
Variable 9:'HISTOLOGICAL.TYPE':	nDistinctValues=4,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 10:'RADIATIONS.RADIATION.REGIMENINDICATION':	nDistinctValues=2,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 11:'RADIATIONEXPOSURE':	nDistinctValues=2,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 12:'BATCH.NUMBER':	nDistinctValues=19,	numeric=FALSE,	binary=FALSE,	exclude=TRUE.
[1] "rownames(nsurv.mat)"
[1] "AGE"                                   
[2] "GENDER"                                
[3] "HISTOLOGICAL.TYPE"                     
[4] "RADIATIONS.RADIATION.REGIMENINDICATION"
[5] "RADIATIONEXPOSURE"                     
[1] "TUMOR.?STAGE"
[1] "TUMOR.?GRADE"
[1] "PATHOLOGY.T"
[1] "PATHOLOGY.N"
Output Data has 218 columns, 1 survival variables, and 5 non-survival variables.
AGE, nv=65, binary=FALSE, numeric=TRUE
GENDER, nv=2, binary=FALSE, numeric=FALSE
HISTOLOGICAL.TYPE, nv=4, binary=FALSE, numeric=FALSE
RADIATIONS.RADIATION.REGIMENINDICATION, nv=2, binary=FALSE, numeric=FALSE
RADIATIONEXPOSURE, nv=2, binary=FALSE, numeric=FALSE

Clustering(1) Variable = CN_CNMF
D1V1, survival
          sevent
clus2        0   1
  subtype1  17   1
  subtype2 161   0
  subtype3  35   0
subtype1 subtype2 subtype3 
      18      161       35 
subtype1 subtype2 subtype3 
       1        0        0 
$subtype1
TCGA-BJ-A0YZ TCGA-BJ-A190 TCGA-BJ-A192 TCGA-DJ-A2PV TCGA-DJ-A2Q0 TCGA-EM-A1YC 
       15.75         0.43         8.09         7.96         8.12        46.72 
TCGA-EM-A1YD TCGA-EM-A1YE TCGA-EM-A22N TCGA-EM-A2CJ TCGA-EM-A2CO TCGA-ET-A2MZ 
       39.75        21.37         6.87        11.44         6.02        12.26 
TCGA-ET-A39M TCGA-ET-A39N TCGA-FE-A231 TCGA-FE-A239 TCGA-FY-A3I5 TCGA-FY-A3NM 
       65.88        65.88        12.30        65.92         1.64         0.99 

$subtype2
TCGA-BJ-A0Z0 TCGA-BJ-A0Z3 TCGA-BJ-A0Z9 TCGA-BJ-A0ZA TCGA-BJ-A0ZB TCGA-BJ-A0ZC 
       11.70         5.98         8.25         8.68         4.01         6.02 
TCGA-BJ-A0ZE TCGA-BJ-A0ZG TCGA-BJ-A0ZJ TCGA-BJ-A191 TCGA-BJ-A28R TCGA-BJ-A28T 
        7.79         7.56         5.00         7.73         4.87         2.76 
TCGA-BJ-A28V TCGA-BJ-A3PR TCGA-CE-A13K TCGA-CE-A27D TCGA-CE-A3MD TCGA-CE-A3ME 
        5.10         8.02         0.53         0.10         0.20         0.23 
TCGA-DE-A0Y2 TCGA-DE-A0Y3 TCGA-DE-A2OL TCGA-DE-A3KN TCGA-DJ-A13O TCGA-DJ-A13P 
        7.59        31.30         5.29         9.40         7.07        65.72 
TCGA-DJ-A13R TCGA-DJ-A13S TCGA-DJ-A13U TCGA-DJ-A13V TCGA-DJ-A13W TCGA-DJ-A13X 
        3.02         8.71        12.92        11.90        14.93         7.99 
TCGA-DJ-A1QD TCGA-DJ-A1QE TCGA-DJ-A1QF TCGA-DJ-A1QH TCGA-DJ-A1QI TCGA-DJ-A1QL 
       10.98        65.85        18.05         7.99         4.96         6.97 
TCGA-DJ-A1QM TCGA-DJ-A1QO TCGA-DJ-A1QQ TCGA-DJ-A2PN TCGA-DJ-A2PO TCGA-DJ-A2PP 
        0.99         1.02         5.95         9.99         7.96         5.00 
TCGA-DJ-A2PQ TCGA-DJ-A2PR TCGA-DJ-A2PT TCGA-DJ-A2PU TCGA-DJ-A2PW TCGA-DJ-A2PX 
       20.48        10.45         9.60        10.26         7.69         5.03 
TCGA-DJ-A2PY TCGA-DJ-A2PZ TCGA-DJ-A2Q1 TCGA-DJ-A2Q2 TCGA-DJ-A2Q3 TCGA-DJ-A2Q4 
        8.78         8.42         9.34         6.77         9.21         9.44 
TCGA-DJ-A2Q5 TCGA-DJ-A2Q6 TCGA-DJ-A2Q8 TCGA-DJ-A2Q9 TCGA-DJ-A2QC TCGA-DJ-A3US 
        9.90         8.61         7.07        10.36         9.99        20.71 
TCGA-DJ-A3UY TCGA-DO-A1JZ TCGA-DO-A1K0 TCGA-E3-A3DY TCGA-E3-A3E0 TCGA-E3-A3E1 
       13.32        40.27         3.06        31.07        50.76        40.18 
TCGA-E3-A3E2 TCGA-E3-A3E3 TCGA-E8-A242 TCGA-E8-A2EA TCGA-E8-A2JQ TCGA-E8-A3X7 
       46.72        20.88         1.12         0.36        66.12         1.48 
TCGA-E8-A413 TCGA-E8-A414 TCGA-E8-A415 TCGA-E8-A416 TCGA-E8-A417 TCGA-E8-A418 
        0.33         0.23         0.16         0.72         0.26         1.48 
TCGA-EM-A1CT TCGA-EM-A1CU TCGA-EM-A1CV TCGA-EM-A1CW TCGA-EM-A1YA TCGA-EM-A1YB 
        5.03         7.04        66.08         8.05         7.13         9.34 
TCGA-EM-A22I TCGA-EM-A22J TCGA-EM-A22O TCGA-EM-A22Q TCGA-EM-A2CK TCGA-EM-A2CL 
        2.66         6.81         6.21         6.31         8.19         6.87 
TCGA-EM-A2CN TCGA-EM-A2CP TCGA-EM-A2CQ TCGA-EM-A2CS TCGA-EM-A2CT TCGA-EM-A2CU 
       11.31         2.96         6.54         9.34        10.49         5.79 
TCGA-ET-A25G TCGA-ET-A25I TCGA-ET-A25J TCGA-ET-A25K TCGA-ET-A25M TCGA-ET-A25N 
       35.77         0.33        29.69        19.36        12.33         2.47 
TCGA-ET-A25P TCGA-ET-A25R TCGA-ET-A2MY TCGA-ET-A2N0 TCGA-ET-A2N1 TCGA-ET-A2N5 
        0.49        20.42        19.04        34.49        14.76        38.86 
TCGA-ET-A39I TCGA-ET-A39J TCGA-ET-A39K TCGA-ET-A39O TCGA-ET-A39P TCGA-ET-A39R 
        0.30        11.90        65.95        43.04        13.35        46.45 
TCGA-ET-A39S TCGA-ET-A39T TCGA-ET-A3BN TCGA-ET-A3BO TCGA-ET-A3BQ TCGA-ET-A3BS 
        0.66         7.79         1.68         5.82         2.43         5.52 
TCGA-ET-A3BT TCGA-ET-A3BU TCGA-ET-A3BV TCGA-ET-A3BW TCGA-ET-A3BX TCGA-ET-A3DO 
       24.72         1.28         1.84         2.37         4.50        65.92 
TCGA-ET-A3DP TCGA-ET-A3DQ TCGA-ET-A3DR TCGA-ET-A3DT TCGA-ET-A3DU TCGA-ET-A3DV 
       50.50        44.91         2.14         4.77         4.54        65.79 
TCGA-ET-A3DW TCGA-FE-A22Z TCGA-FE-A230 TCGA-FE-A232 TCGA-FE-A233 TCGA-FE-A234 
       24.69        51.45        47.41        44.25        24.69        43.82 
TCGA-FE-A235 TCGA-FE-A236 TCGA-FE-A238 TCGA-FE-A23A TCGA-FE-A3PA TCGA-FE-A3PC 
       65.82        65.88        39.95        62.70        65.82        61.41 
TCGA-FE-A3PD TCGA-FY-A2QD TCGA-FY-A3BL TCGA-FY-A3NN TCGA-FY-A3R6 TCGA-FY-A3R9 
       62.89         1.25         1.15        66.12         0.76         2.17 
TCGA-FY-A3RA TCGA-H2-A26U TCGA-H2-A2K9 TCGA-H2-A3RH TCGA-H2-A3RI TCGA-IM-A3EB 
        9.14         3.48         4.77         4.87         2.96        35.18 
TCGA-IM-A3ED TCGA-IM-A3U2 TCGA-J8-A3NZ TCGA-J8-A3O1 TCGA-J8-A3O2 
       30.87         2.63         2.24        13.64         1.35 

$subtype3
TCGA-BJ-A0Z2 TCGA-BJ-A0Z5 TCGA-BJ-A0ZH TCGA-BJ-A18Y TCGA-BJ-A3PT TCGA-DE-A0XZ 
        7.63         6.48         0.72         2.79        12.07        13.22 
TCGA-DJ-A13M TCGA-DJ-A13T TCGA-DJ-A1QG TCGA-DJ-A1QN TCGA-DJ-A2PS TCGA-DJ-A2Q7 
        9.01        24.92         6.97         8.98         1.94         9.57 
TCGA-DJ-A2QA TCGA-DJ-A2QB TCGA-DJ-A3UN TCGA-E3-A3DZ TCGA-E3-A3E5 TCGA-EM-A1CS 
       12.43        10.85        12.49        12.00        14.04        19.07 
TCGA-EM-A22K TCGA-EM-A22L TCGA-EM-A22M TCGA-EM-A22P TCGA-EM-A2CM TCGA-ET-A25L 
        6.64         4.54         3.48         5.72        11.74        14.79 
TCGA-ET-A25O TCGA-ET-A2N4 TCGA-ET-A39L TCGA-ET-A3BP TCGA-ET-A3DS TCGA-FE-A237 
        4.44         1.41         1.94         4.18         0.30        65.92 
TCGA-FE-A3PB TCGA-FY-A3R7 TCGA-GE-A2C6 TCGA-IM-A3U3 TCGA-J8-A3O0 
       65.88         0.03         6.77         3.25        12.89 

subtype1 subtype2 subtype3 
    0.43     0.10     0.03 
subtype1 subtype2 subtype3 
   65.92    66.12    65.92 
subtype1 subtype2 subtype3 
   11.85     8.02     7.63 
[1] "0.4 - 65.9 (11.8)" "0.1 - 66.1 (8.0)"  "0.0 - 65.9 (7.6)" 
  [1] "subtype1" "subtype2" "subtype3" "subtype2" "subtype3" "subtype2"
  [7] "subtype2" "subtype2" "subtype2" "subtype2" "subtype2" "subtype3"
 [13] "subtype2" "subtype3" "subtype1" "subtype2" "subtype1" "subtype2"
 [19] "subtype2" "subtype2" "subtype2" "subtype3" "subtype2" "subtype2"
 [25] "subtype2" "subtype2" "subtype3" "subtype2" "subtype2" "subtype2"
 [31] "subtype2" "subtype3" "subtype2" "subtype2" "subtype2" "subtype2"
 [37] "subtype3" "subtype2" "subtype2" "subtype2" "subtype2" "subtype2"
 [43] "subtype2" "subtype2" "subtype3" "subtype2" "subtype2" "subtype2"
 [49] "subtype2" "subtype3" "subtype2" "subtype2" "subtype2" "subtype2"
 [55] "subtype2" "subtype2" "subtype2" "subtype3" "subtype2" "subtype2"
 [61] "subtype1" "subtype2" "subtype2" "subtype2" "subtype2" "subtype1"
 [67] "subtype2" "subtype2" "subtype2" "subtype2" "subtype2" "subtype2"
 [73] "subtype3" "subtype2" "subtype2" "subtype3" "subtype3" "subtype2"
 [79] "subtype3" "subtype2" "subtype2" "subtype2" "subtype2" "subtype2"
 [85] "subtype3" "subtype2" "subtype2" "subtype2" "subtype2" "subtype3"
 [91] "subtype2" "subtype2" "subtype2" "subtype2" "subtype2" "subtype2"
 [97] "subtype2" "subtype2" "subtype2" "subtype2" "subtype3" "subtype2"
[103] "subtype2" "subtype2" "subtype2" "subtype2" "subtype2" "subtype1"
[109] "subtype1" "subtype1" "subtype2" "subtype2" "subtype3" "subtype3"
[115] "subtype3" "subtype1" "subtype2" "subtype3" "subtype2" "subtype1"
[121] "subtype2" "subtype2" "subtype3" "subtype2" "subtype1" "subtype2"
[127] "subtype2" "subtype2" "subtype2" "subtype2" "subtype2" "subtype2"
[133] "subtype2" "subtype2" "subtype3" "subtype2" "subtype2" "subtype3"
[139] "subtype2" "subtype2" "subtype2" "subtype1" "subtype2" "subtype2"
[145] "subtype3" "subtype2" "subtype2" "subtype2" "subtype2" "subtype3"
[151] "subtype1" "subtype1" "subtype2" "subtype2" "subtype2" "subtype2"
[157] "subtype2" "subtype2" "subtype2" "subtype3" "subtype2" "subtype2"
[163] "subtype2" "subtype2" "subtype2" "subtype2" "subtype2" "subtype2"
[169] "subtype2" "subtype2" "subtype2" "subtype3" "subtype2" "subtype2"
[175] "subtype2" "subtype2" "subtype2" "subtype2" "subtype1" "subtype2"
[181] "subtype2" "subtype2" "subtype2" "subtype2" "subtype3" "subtype2"
[187] "subtype1" "subtype2" "subtype2" "subtype3" "subtype2" "subtype2"
[193] "subtype2" "subtype2" "subtype1" "subtype1" "subtype2" "subtype2"
[199] "subtype3" "subtype2" "subtype2" "subtype3" "subtype2" "subtype2"
[205] "subtype2" "subtype2" "subtype2" "subtype2" "subtype2" "subtype3"
[211] "subtype2" "subtype3" "subtype2" "subtype2"
  [1] "subtype1" "subtype2" "subtype3" "subtype2" "subtype3" "subtype2"
  [7] "subtype2" "subtype2" "subtype2" "subtype2" "subtype2" "subtype3"
 [13] "subtype2" "subtype3" "subtype1" "subtype2" "subtype1" "subtype2"
 [19] "subtype2" "subtype2" "subtype2" "subtype3" "subtype2" "subtype2"
 [25] "subtype2" "subtype2" "subtype3" "subtype2" "subtype2" "subtype2"
 [31] "subtype2" "subtype3" "subtype2" "subtype2" "subtype2" "subtype2"
 [37] "subtype3" "subtype2" "subtype2" "subtype2" "subtype2" "subtype2"
 [43] "subtype2" "subtype2" "subtype3" "subtype2" "subtype2" "subtype2"
 [49] "subtype2" "subtype3" "subtype2" "subtype2" "subtype2" "subtype2"
 [55] "subtype2" "subtype2" "subtype2" "subtype3" "subtype2" "subtype2"
 [61] "subtype1" "subtype2" "subtype2" "subtype2" "subtype2" "subtype1"
 [67] "subtype2" "subtype2" "subtype2" "subtype2" "subtype2" "subtype2"
 [73] "subtype3" "subtype2" "subtype2" "subtype3" "subtype3" "subtype2"
 [79] "subtype3" "subtype2" "subtype2" "subtype2" "subtype2" "subtype2"
 [85] "subtype3" "subtype2" "subtype2" "subtype2" "subtype2" "subtype3"
 [91] "subtype2" "subtype2" "subtype2" "subtype2" "subtype2" "subtype2"
 [97] "subtype2" "subtype2" "subtype2" "subtype2" "subtype3" "subtype2"
[103] "subtype2" "subtype2" "subtype2" "subtype2" "subtype2" "subtype1"
[109] "subtype1" "subtype1" "subtype2" "subtype2" "subtype3" "subtype3"
[115] "subtype3" "subtype1" "subtype2" "subtype3" "subtype2" "subtype1"
[121] "subtype2" "subtype2" "subtype3" "subtype2" "subtype1" "subtype2"
[127] "subtype2" "subtype2" "subtype2" "subtype2" "subtype2" "subtype2"
[133] "subtype2" "subtype2" "subtype3" "subtype2" "subtype2" "subtype3"
[139] "subtype2" "subtype2" "subtype2" "subtype1" "subtype2" "subtype2"
[145] "subtype3" "subtype2" "subtype2" "subtype2" "subtype2" "subtype3"
[151] "subtype1" "subtype1" "subtype2" "subtype2" "subtype2" "subtype2"
[157] "subtype2" "subtype2" "subtype2" "subtype3" "subtype2" "subtype2"
[163] "subtype2" "subtype2" "subtype2" "subtype2" "subtype2" "subtype2"
[169] "subtype2" "subtype2" "subtype2" "subtype3" "subtype2" "subtype2"
[175] "subtype2" "subtype2" "subtype2" "subtype2" "subtype1" "subtype2"
[181] "subtype2" "subtype2" "subtype2" "subtype2" "subtype3" "subtype2"
[187] "subtype1" "subtype2" "subtype2" "subtype3" "subtype2" "subtype2"
[193] "subtype2" "subtype2" "subtype1" "subtype1" "subtype2" "subtype2"
[199] "subtype3" "subtype2" "subtype2" "subtype3" "subtype2" "subtype2"
[205] "subtype2" "subtype2" "subtype2" "subtype2" "subtype2" "subtype3"
[211] "subtype2" "subtype3" "subtype2" "subtype2"
  [1] "subtype1" "subtype2" "subtype3" "subtype2" "subtype3" "subtype2"
  [7] "subtype2" "subtype2" "subtype2" "subtype2" "subtype2" "subtype3"
 [13] "subtype2" "subtype3" "subtype1" "subtype2" "subtype1" "subtype2"
 [19] "subtype2" "subtype2" "subtype2" "subtype3" "subtype2" "subtype2"
 [25] "subtype2" "subtype2" "subtype3" "subtype2" "subtype2" "subtype2"
 [31] "subtype2" "subtype3" "subtype2" "subtype2" "subtype2" "subtype2"
 [37] "subtype3" "subtype2" "subtype2" "subtype2" "subtype2" "subtype2"
 [43] "subtype2" "subtype2" "subtype3" "subtype2" "subtype2" "subtype2"
 [49] "subtype2" "subtype3" "subtype2" "subtype2" "subtype2" "subtype2"
 [55] "subtype2" "subtype2" "subtype2" "subtype3" "subtype2" "subtype2"
 [61] "subtype1" "subtype2" "subtype2" "subtype2" "subtype2" "subtype1"
 [67] "subtype2" "subtype2" "subtype2" "subtype2" "subtype2" "subtype2"
 [73] "subtype3" "subtype2" "subtype2" "subtype3" "subtype3" "subtype2"
 [79] "subtype3" "subtype2" "subtype2" "subtype2" "subtype2" "subtype2"
 [85] "subtype3" "subtype2" "subtype2" "subtype2" "subtype2" "subtype3"
 [91] "subtype2" "subtype2" "subtype2" "subtype2" "subtype2" "subtype2"
 [97] "subtype2" "subtype2" "subtype2" "subtype2" "subtype3" "subtype2"
[103] "subtype2" "subtype2" "subtype2" "subtype2" "subtype2" "subtype1"
[109] "subtype1" "subtype1" "subtype2" "subtype2" "subtype3" "subtype3"
[115] "subtype3" "subtype1" "subtype2" "subtype3" "subtype2" "subtype1"
[121] "subtype2" "subtype2" "subtype3" "subtype2" "subtype1" "subtype2"
[127] "subtype2" "subtype2" "subtype2" "subtype2" "subtype2" "subtype2"
[133] "subtype2" "subtype2" "subtype3" "subtype2" "subtype2" "subtype3"
[139] "subtype2" "subtype2" "subtype2" "subtype1" "subtype2" "subtype2"
[145] "subtype3" "subtype2" "subtype2" "subtype2" "subtype2" "subtype3"
[151] "subtype1" "subtype1" "subtype2" "subtype2" "subtype2" "subtype2"
[157] "subtype2" "subtype2" "subtype2" "subtype3" "subtype2" "subtype2"
[163] "subtype2" "subtype2" "subtype2" "subtype2" "subtype2" "subtype2"
[169] "subtype2" "subtype2" "subtype2" "subtype3" "subtype2" "subtype2"
[175] "subtype2" "subtype2" "subtype2" "subtype2" "subtype1" "subtype2"
[181] "subtype2" "subtype2" "subtype2" "subtype2" "subtype3" "subtype2"
[187] "subtype1" "subtype2" "subtype2" "subtype3" "subtype2" "subtype2"
[193] "subtype2" "subtype2" "subtype1" "subtype1" "subtype2" "subtype2"
[199] "subtype3" "subtype2" "subtype2" "subtype3" "subtype2" "subtype2"
[205] "subtype2" "subtype2" "subtype2" "subtype2" "subtype2" "subtype3"
[211] "subtype2" "subtype3" "subtype2" "subtype2"
D1V2, continuous
D1V3, binary
          cls
clus         0   1
  subtype1  12   6
  subtype2 121  40
  subtype3  27   8
[1] "tbl2"
          cls
clus       [,1] [,2]
  subtype1   12    6
  subtype2  121   40
  subtype3   27    8
        clus
vv       subtype1 subtype2 subtype3
  FEMALE       12      121       27
  MALE          6       40        8
D1V4, multiclass
D1V5, binary
          cls
clus         0   1
  subtype1   2  16
  subtype2  11 150
  subtype3   1  34
[1] "tbl2"
          cls
clus       [,1] [,2]
  subtype1    2   16
  subtype2   11  150
  subtype3    1   34
     clus
vv    subtype1 subtype2 subtype3
  NO         2       11        1
  YES       16      150       34
D1V6, binary
          cls
clus         0   1
  subtype1  16   1
  subtype2 128   8
  subtype3  33   0
[1] "tbl2"
          cls
clus       [,1] [,2]
  subtype1   16    1
  subtype2  128    8
  subtype3   33    0
     clus
vv    subtype1 subtype2 subtype3
  NO        16      128       33
  YES        1        8        0

Clustering(2) Variable = METHLYATION_CNMF
D2V1, survival
          sevent
clus2        0   1
  subtype1  71   1
  subtype2  30   0
  subtype3 116   0
subtype1 subtype2 subtype3 
      72       30      116 
subtype1 subtype2 subtype3 
       1        0        0 
$subtype1
TCGA-BJ-A0YZ TCGA-BJ-A0Z0 TCGA-BJ-A0Z2 TCGA-BJ-A0ZA TCGA-BJ-A0ZC TCGA-BJ-A0ZE 
       15.75        11.70         7.63         8.68         6.02         7.79 
TCGA-BJ-A0ZF TCGA-BJ-A0ZG TCGA-BJ-A18Y TCGA-BJ-A190 TCGA-BJ-A191 TCGA-BJ-A192 
        6.90         7.56         2.79         0.43         7.73         8.09 
TCGA-BJ-A28V TCGA-BJ-A3PT TCGA-CE-A3ME TCGA-DE-A2OL TCGA-DJ-A13M TCGA-DJ-A13S 
        5.10        12.07         0.23         5.29         9.01         8.71 
TCGA-DJ-A13W TCGA-DJ-A1QG TCGA-DJ-A1QL TCGA-DJ-A1QM TCGA-DJ-A2PP TCGA-DJ-A2PS 
       14.93         6.97         6.97         0.99         5.00         1.94 
TCGA-DJ-A2Q0 TCGA-DJ-A2Q2 TCGA-DJ-A2QB TCGA-DJ-A3UY TCGA-E3-A3DZ TCGA-E8-A413 
        8.12         6.77        10.85        13.32        12.00         0.33 
TCGA-E8-A415 TCGA-E8-A416 TCGA-EM-A1CW TCGA-EM-A1YA TCGA-EM-A1YB TCGA-EM-A1YC 
        0.16         0.72         8.05         7.13         9.34        46.72 
TCGA-EM-A1YD TCGA-EM-A1YE TCGA-EM-A22J TCGA-EM-A22K TCGA-EM-A22L TCGA-EM-A22N 
       39.75        21.37         6.81         6.64         4.54         6.87 
TCGA-EM-A22Q TCGA-EM-A2CJ TCGA-EM-A2CK TCGA-EM-A2CL TCGA-EM-A2CM TCGA-EM-A2CN 
        6.31        11.44         8.19         6.87        11.74        11.31 
TCGA-EM-A2CO TCGA-EM-A2CQ TCGA-EM-A2CR TCGA-EM-A2CT TCGA-ET-A25I TCGA-ET-A25P 
        6.02         6.54         7.17        10.49         0.33         0.49 
TCGA-ET-A2N1 TCGA-ET-A2N5 TCGA-ET-A39I TCGA-ET-A39L TCGA-ET-A39N TCGA-ET-A3DS 
       14.76        38.86         0.30         1.94        65.88         0.30 
TCGA-ET-A3DV TCGA-FE-A239 TCGA-FY-A2QD TCGA-FY-A3I5 TCGA-FY-A3NM TCGA-FY-A3NN 
       65.79        65.92         1.25         1.64         0.99        66.12 
TCGA-FY-A3NP TCGA-FY-A3R7 TCGA-FY-A3R9 TCGA-H2-A2K9 TCGA-H2-A3RH TCGA-J8-A3O0 
        0.59         0.03         2.17         4.77         4.87        12.89 

$subtype2
TCGA-BJ-A0Z3 TCGA-BJ-A0ZJ TCGA-BJ-A28T TCGA-BJ-A3PR TCGA-CE-A27D TCGA-DJ-A13O 
        5.98         5.00         2.76         8.02         0.10         7.07 
TCGA-DJ-A13R TCGA-DJ-A2PT TCGA-DJ-A2Q1 TCGA-DJ-A2Q3 TCGA-DJ-A2Q5 TCGA-DJ-A2Q9 
        3.02         9.60         9.34         9.21         9.90        10.36 
TCGA-DJ-A3US TCGA-E8-A242 TCGA-E8-A2EA TCGA-E8-A2JQ TCGA-E8-A414 TCGA-EM-A22M 
       20.71         1.12         0.36        66.12         0.23         3.48 
TCGA-EM-A22P TCGA-EM-A2CP TCGA-ET-A39M TCGA-ET-A3BV TCGA-ET-A3DO TCGA-ET-A3DQ 
        5.72         2.96        65.88         1.84        65.92        44.91 
TCGA-ET-A3DT TCGA-ET-A3DU TCGA-FE-A230 TCGA-FY-A3R6 TCGA-GE-A2C6 TCGA-H2-A26U 
        4.77         4.54        47.41         0.76         6.77         3.48 

$subtype3
TCGA-BJ-A0Z5 TCGA-BJ-A0Z9 TCGA-BJ-A0ZB TCGA-BJ-A0ZH TCGA-BJ-A28R TCGA-CE-A13K 
        6.48         8.25         4.01         0.72         4.87         0.53 
TCGA-CE-A3MD TCGA-DE-A0XZ TCGA-DE-A0Y2 TCGA-DE-A0Y3 TCGA-DE-A3KN TCGA-DJ-A13P 
        0.20        13.22         7.59        31.30         9.40        65.72 
TCGA-DJ-A13T TCGA-DJ-A13U TCGA-DJ-A13V TCGA-DJ-A13X TCGA-DJ-A1QD TCGA-DJ-A1QE 
       24.92        12.92        11.90         7.99        10.98        65.85 
TCGA-DJ-A1QF TCGA-DJ-A1QH TCGA-DJ-A1QI TCGA-DJ-A1QN TCGA-DJ-A1QO TCGA-DJ-A1QQ 
       18.05         7.99         4.96         8.98         1.02         5.95 
TCGA-DJ-A2PN TCGA-DJ-A2PO TCGA-DJ-A2PQ TCGA-DJ-A2PR TCGA-DJ-A2PU TCGA-DJ-A2PV 
        9.99         7.96        20.48        10.45        10.26         7.96 
TCGA-DJ-A2PW TCGA-DJ-A2PX TCGA-DJ-A2PY TCGA-DJ-A2PZ TCGA-DJ-A2Q4 TCGA-DJ-A2Q6 
        7.69         5.03         8.78         8.42         9.44         8.61 
TCGA-DJ-A2Q7 TCGA-DJ-A2Q8 TCGA-DJ-A2QA TCGA-DJ-A2QC TCGA-DJ-A3UN TCGA-DO-A1JZ 
        9.57         7.07        12.43         9.99        12.49        40.27 
TCGA-DO-A1K0 TCGA-E3-A3DY TCGA-E3-A3E0 TCGA-E3-A3E1 TCGA-E3-A3E2 TCGA-E3-A3E3 
        3.06        31.07        50.76        40.18        46.72        20.88 
TCGA-E3-A3E5 TCGA-E8-A3X7 TCGA-E8-A417 TCGA-E8-A418 TCGA-EM-A1CS TCGA-EM-A1CT 
       14.04         1.48         0.26         1.48        19.07         5.03 
TCGA-EM-A1CU TCGA-EM-A1CV TCGA-EM-A22I TCGA-EM-A22O TCGA-EM-A2CS TCGA-EM-A2CU 
        7.04        66.08         2.66         6.21         9.34         5.79 
TCGA-ET-A25G TCGA-ET-A25J TCGA-ET-A25K TCGA-ET-A25L TCGA-ET-A25M TCGA-ET-A25N 
       35.77        29.69        19.36        14.79        12.33         2.47 
TCGA-ET-A25O TCGA-ET-A25R TCGA-ET-A2MY TCGA-ET-A2MZ TCGA-ET-A2N0 TCGA-ET-A2N4 
        4.44        20.42        19.04        12.26        34.49         1.41 
TCGA-ET-A39J TCGA-ET-A39K TCGA-ET-A39O TCGA-ET-A39P TCGA-ET-A39R TCGA-ET-A39S 
       11.90        65.95        43.04        13.35        46.45         0.66 
TCGA-ET-A39T TCGA-ET-A3BN TCGA-ET-A3BO TCGA-ET-A3BP TCGA-ET-A3BQ TCGA-ET-A3BS 
        7.79         1.68         5.82         4.18         2.43         5.52 
TCGA-ET-A3BT TCGA-ET-A3BU TCGA-ET-A3BW TCGA-ET-A3BX TCGA-ET-A3DP TCGA-ET-A3DR 
       24.72         1.28         2.37         4.50        50.50         2.14 
TCGA-ET-A3DW TCGA-FE-A22Z TCGA-FE-A231 TCGA-FE-A232 TCGA-FE-A233 TCGA-FE-A234 
       24.69        51.45        12.30        44.25        24.69        43.82 
TCGA-FE-A235 TCGA-FE-A236 TCGA-FE-A237 TCGA-FE-A238 TCGA-FE-A23A TCGA-FE-A3PA 
       65.82        65.88        65.92        39.95        62.70        65.82 
TCGA-FE-A3PB TCGA-FE-A3PC TCGA-FE-A3PD TCGA-FY-A3BL TCGA-FY-A3ON TCGA-FY-A3RA 
       65.88        61.41        62.89         1.15         1.51         9.14 
TCGA-H2-A3RI TCGA-IM-A3EB TCGA-IM-A3ED TCGA-IM-A3U2 TCGA-IM-A3U3 TCGA-J8-A3NZ 
        2.96        35.18        30.87         2.63         3.25         2.24 
TCGA-J8-A3O1 TCGA-J8-A3O2 
       13.64         1.35 

subtype1 subtype2 subtype3 
    0.03     0.10     0.20 
subtype1 subtype2 subtype3 
   66.12    66.12    66.08 
subtype1 subtype2 subtype3 
    6.97     5.85     9.99 
[1] "0.0 - 66.1 (7.0)"  "0.1 - 66.1 (5.8)"  "0.2 - 66.1 (10.0)"
  [1] "subtype1" "subtype1" "subtype1" "subtype2" "subtype3" "subtype3"
  [7] "subtype1" "subtype3" "subtype1" "subtype1" "subtype1" "subtype1"
 [13] "subtype3" "subtype2" "subtype1" "subtype1" "subtype1" "subtype1"
 [19] "subtype3" "subtype2" "subtype1" "subtype2" "subtype1" "subtype3"
 [25] "subtype2" "subtype3" "subtype1" "subtype3" "subtype3" "subtype3"
 [31] "subtype1" "subtype3" "subtype1" "subtype2" "subtype3" "subtype2"
 [37] "subtype1" "subtype3" "subtype3" "subtype3" "subtype1" "subtype3"
 [43] "subtype3" "subtype3" "subtype3" "subtype1" "subtype3" "subtype3"
 [49] "subtype1" "subtype1" "subtype3" "subtype3" "subtype3" "subtype3"
 [55] "subtype3" "subtype1" "subtype3" "subtype3" "subtype1" "subtype2"
 [61] "subtype3" "subtype3" "subtype3" "subtype3" "subtype3" "subtype3"
 [67] "subtype1" "subtype2" "subtype1" "subtype2" "subtype3" "subtype2"
 [73] "subtype3" "subtype3" "subtype3" "subtype2" "subtype3" "subtype1"
 [79] "subtype3" "subtype3" "subtype2" "subtype1" "subtype3" "subtype3"
 [85] "subtype3" "subtype1" "subtype3" "subtype3" "subtype3" "subtype3"
 [91] "subtype3" "subtype2" "subtype2" "subtype2" "subtype3" "subtype1"
 [97] "subtype2" "subtype1" "subtype1" "subtype3" "subtype3" "subtype3"
[103] "subtype3" "subtype3" "subtype3" "subtype1" "subtype1" "subtype1"
[109] "subtype1" "subtype1" "subtype1" "subtype3" "subtype1" "subtype1"
[115] "subtype1" "subtype2" "subtype1" "subtype3" "subtype2" "subtype1"
[121] "subtype1" "subtype1" "subtype1" "subtype1" "subtype1" "subtype1"
[127] "subtype2" "subtype1" "subtype1" "subtype3" "subtype1" "subtype3"
[133] "subtype3" "subtype1" "subtype3" "subtype3" "subtype3" "subtype3"
[139] "subtype3" "subtype3" "subtype1" "subtype3" "subtype3" "subtype3"
[145] "subtype3" "subtype1" "subtype3" "subtype1" "subtype1" "subtype3"
[151] "subtype3" "subtype1" "subtype2" "subtype1" "subtype3" "subtype3"
[157] "subtype3" "subtype3" "subtype3" "subtype3" "subtype3" "subtype3"
[163] "subtype3" "subtype3" "subtype3" "subtype3" "subtype2" "subtype3"
[169] "subtype3" "subtype2" "subtype3" "subtype2" "subtype3" "subtype1"
[175] "subtype2" "subtype2" "subtype1" "subtype3" "subtype3" "subtype2"
[181] "subtype3" "subtype3" "subtype3" "subtype3" "subtype3" "subtype3"
[187] "subtype3" "subtype3" "subtype1" "subtype3" "subtype3" "subtype3"
[193] "subtype3" "subtype3" "subtype1" "subtype3" "subtype1" "subtype1"
[199] "subtype1" "subtype1" "subtype3" "subtype2" "subtype1" "subtype1"
[205] "subtype3" "subtype2" "subtype2" "subtype1" "subtype1" "subtype3"
[211] "subtype3" "subtype3" "subtype3" "subtype3" "subtype3" "subtype1"
[217] "subtype3" "subtype3"
  [1] "subtype1" "subtype1" "subtype1" "subtype2" "subtype3" "subtype3"
  [7] "subtype1" "subtype3" "subtype1" "subtype1" "subtype1" "subtype1"
 [13] "subtype3" "subtype2" "subtype1" "subtype1" "subtype1" "subtype1"
 [19] "subtype3" "subtype2" "subtype1" "subtype2" "subtype1" "subtype3"
 [25] "subtype2" "subtype3" "subtype1" "subtype3" "subtype3" "subtype3"
 [31] "subtype1" "subtype3" "subtype1" "subtype2" "subtype3" "subtype2"
 [37] "subtype1" "subtype3" "subtype3" "subtype3" "subtype1" "subtype3"
 [43] "subtype3" "subtype3" "subtype3" "subtype1" "subtype3" "subtype3"
 [49] "subtype1" "subtype1" "subtype3" "subtype3" "subtype3" "subtype3"
 [55] "subtype3" "subtype1" "subtype3" "subtype3" "subtype1" "subtype2"
 [61] "subtype3" "subtype3" "subtype3" "subtype3" "subtype3" "subtype3"
 [67] "subtype1" "subtype2" "subtype1" "subtype2" "subtype3" "subtype2"
 [73] "subtype3" "subtype3" "subtype3" "subtype2" "subtype3" "subtype1"
 [79] "subtype3" "subtype3" "subtype2" "subtype1" "subtype3" "subtype3"
 [85] "subtype3" "subtype1" "subtype3" "subtype3" "subtype3" "subtype3"
 [91] "subtype3" "subtype2" "subtype2" "subtype2" "subtype3" "subtype1"
 [97] "subtype2" "subtype1" "subtype1" "subtype3" "subtype3" "subtype3"
[103] "subtype3" "subtype3" "subtype3" "subtype1" "subtype1" "subtype1"
[109] "subtype1" "subtype1" "subtype1" "subtype3" "subtype1" "subtype1"
[115] "subtype1" "subtype2" "subtype1" "subtype3" "subtype2" "subtype1"
[121] "subtype1" "subtype1" "subtype1" "subtype1" "subtype1" "subtype1"
[127] "subtype2" "subtype1" "subtype1" "subtype3" "subtype1" "subtype3"
[133] "subtype3" "subtype1" "subtype3" "subtype3" "subtype3" "subtype3"
[139] "subtype3" "subtype3" "subtype1" "subtype3" "subtype3" "subtype3"
[145] "subtype3" "subtype1" "subtype3" "subtype1" "subtype1" "subtype3"
[151] "subtype3" "subtype1" "subtype2" "subtype1" "subtype3" "subtype3"
[157] "subtype3" "subtype3" "subtype3" "subtype3" "subtype3" "subtype3"
[163] "subtype3" "subtype3" "subtype3" "subtype3" "subtype2" "subtype3"
[169] "subtype3" "subtype2" "subtype3" "subtype2" "subtype3" "subtype1"
[175] "subtype2" "subtype2" "subtype1" "subtype3" "subtype3" "subtype2"
[181] "subtype3" "subtype3" "subtype3" "subtype3" "subtype3" "subtype3"
[187] "subtype3" "subtype3" "subtype1" "subtype3" "subtype3" "subtype3"
[193] "subtype3" "subtype3" "subtype1" "subtype3" "subtype1" "subtype1"
[199] "subtype1" "subtype1" "subtype3" "subtype2" "subtype1" "subtype1"
[205] "subtype3" "subtype2" "subtype2" "subtype1" "subtype1" "subtype3"
[211] "subtype3" "subtype3" "subtype3" "subtype3" "subtype3" "subtype1"
[217] "subtype3" "subtype3"
  [1] "subtype1" "subtype1" "subtype1" "subtype2" "subtype3" "subtype3"
  [7] "subtype1" "subtype3" "subtype1" "subtype1" "subtype1" "subtype1"
 [13] "subtype3" "subtype2" "subtype1" "subtype1" "subtype1" "subtype1"
 [19] "subtype3" "subtype2" "subtype1" "subtype2" "subtype1" "subtype3"
 [25] "subtype2" "subtype3" "subtype1" "subtype3" "subtype3" "subtype3"
 [31] "subtype1" "subtype3" "subtype1" "subtype2" "subtype3" "subtype2"
 [37] "subtype1" "subtype3" "subtype3" "subtype3" "subtype1" "subtype3"
 [43] "subtype3" "subtype3" "subtype3" "subtype1" "subtype3" "subtype3"
 [49] "subtype1" "subtype1" "subtype3" "subtype3" "subtype3" "subtype3"
 [55] "subtype3" "subtype1" "subtype3" "subtype3" "subtype1" "subtype2"
 [61] "subtype3" "subtype3" "subtype3" "subtype3" "subtype3" "subtype3"
 [67] "subtype1" "subtype2" "subtype1" "subtype2" "subtype3" "subtype2"
 [73] "subtype3" "subtype3" "subtype3" "subtype2" "subtype3" "subtype1"
 [79] "subtype3" "subtype3" "subtype2" "subtype1" "subtype3" "subtype3"
 [85] "subtype3" "subtype1" "subtype3" "subtype3" "subtype3" "subtype3"
 [91] "subtype3" "subtype2" "subtype2" "subtype2" "subtype3" "subtype1"
 [97] "subtype2" "subtype1" "subtype1" "subtype3" "subtype3" "subtype3"
[103] "subtype3" "subtype3" "subtype3" "subtype1" "subtype1" "subtype1"
[109] "subtype1" "subtype1" "subtype1" "subtype3" "subtype1" "subtype1"
[115] "subtype1" "subtype2" "subtype1" "subtype3" "subtype2" "subtype1"
[121] "subtype1" "subtype1" "subtype1" "subtype1" "subtype1" "subtype1"
[127] "subtype2" "subtype1" "subtype1" "subtype3" "subtype1" "subtype3"
[133] "subtype3" "subtype1" "subtype3" "subtype3" "subtype3" "subtype3"
[139] "subtype3" "subtype3" "subtype1" "subtype3" "subtype3" "subtype3"
[145] "subtype3" "subtype1" "subtype3" "subtype1" "subtype1" "subtype3"
[151] "subtype3" "subtype1" "subtype2" "subtype1" "subtype3" "subtype3"
[157] "subtype3" "subtype3" "subtype3" "subtype3" "subtype3" "subtype3"
[163] "subtype3" "subtype3" "subtype3" "subtype3" "subtype2" "subtype3"
[169] "subtype3" "subtype2" "subtype3" "subtype2" "subtype3" "subtype1"
[175] "subtype2" "subtype2" "subtype1" "subtype3" "subtype3" "subtype2"
[181] "subtype3" "subtype3" "subtype3" "subtype3" "subtype3" "subtype3"
[187] "subtype3" "subtype3" "subtype1" "subtype3" "subtype3" "subtype3"
[193] "subtype3" "subtype3" "subtype1" "subtype3" "subtype1" "subtype1"
[199] "subtype1" "subtype1" "subtype3" "subtype2" "subtype1" "subtype1"
[205] "subtype3" "subtype2" "subtype2" "subtype1" "subtype1" "subtype3"
[211] "subtype3" "subtype3" "subtype3" "subtype3" "subtype3" "subtype1"
[217] "subtype3" "subtype3"
D2V2, continuous
D2V3, binary
          cls
clus        0  1
  subtype1 53 19
  subtype2 23  7
  subtype3 86 30
[1] "tbl2"
          cls
clus       [,1] [,2]
  subtype1   53   19
  subtype2   23    7
  subtype3   86   30
        clus
vv       subtype1 subtype2 subtype3
  FEMALE       53       23       86
  MALE         19        7       30
D2V4, multiclass
D2V5, binary
          cls
clus         0   1
  subtype1   1  71
  subtype2   1  29
  subtype3  12 104
[1] "tbl2"
          cls
clus       [,1] [,2]
  subtype1    1   71
  subtype2    1   29
  subtype3   12  104
     clus
vv    subtype1 subtype2 subtype3
  NO         1        1       12
  YES       71       29      104
D2V6, binary
          cls
clus        0  1
  subtype1 57  3
  subtype2 25  1
  subtype3 98  5
[1] "tbl2"
          cls
clus       [,1] [,2]
  subtype1   57    3
  subtype2   25    1
  subtype3   98    5
     clus
vv    subtype1 subtype2 subtype3
  NO        57       25       98
  YES        3        1        5

Clustering(3) Variable = RPPA_CNMF
D3V1, survival
          sevent
clus2       0  1
  subtype1 43  0
  subtype2 55  0
  subtype3 56  1
subtype1 subtype2 subtype3 
      43       55       57 
subtype1 subtype2 subtype3 
       0        0        1 
$subtype1
TCGA-BJ-A0YZ TCGA-BJ-A0Z0 TCGA-BJ-A0Z2 TCGA-BJ-A0Z3 TCGA-BJ-A0ZA TCGA-BJ-A0ZC 
       15.75        11.70         7.63         5.98         8.68         6.02 
TCGA-BJ-A0ZE TCGA-BJ-A0ZG TCGA-BJ-A0ZJ TCGA-BJ-A18Y TCGA-BJ-A190 TCGA-BJ-A192 
        7.79         7.56         5.00         2.79         0.43         8.09 
TCGA-DE-A3KN TCGA-DJ-A13M TCGA-DJ-A13W TCGA-DJ-A13X TCGA-DJ-A1QF TCGA-DJ-A1QM 
        9.40         9.01        14.93         7.99        18.05         0.99 
TCGA-DJ-A2PN TCGA-DJ-A2PO TCGA-DJ-A2PV TCGA-DJ-A2PZ TCGA-DJ-A2Q2 TCGA-DJ-A2Q6 
        9.99         7.96         7.96         8.42         6.77         8.61 
TCGA-DJ-A2Q7 TCGA-DJ-A2Q9 TCGA-DJ-A2QA TCGA-DJ-A2QC TCGA-E3-A3DZ TCGA-EM-A1CW 
        9.57        10.36        12.43         9.99        12.00         8.05 
TCGA-EM-A1YD TCGA-EM-A22L TCGA-EM-A2CJ TCGA-EM-A2CK TCGA-EM-A2CL TCGA-EM-A2CQ 
       39.75         4.54        11.44         8.19         6.87         6.54 
TCGA-EM-A2CU TCGA-ET-A2N5 TCGA-ET-A39I TCGA-ET-A3BP TCGA-ET-A3DP TCGA-FY-A2QD 
        5.79        38.86         0.30         4.18        50.50         1.25 
TCGA-J8-A3O0 
       12.89 

$subtype2
TCGA-BJ-A0Z5 TCGA-BJ-A0Z9 TCGA-BJ-A0ZB TCGA-BJ-A28R TCGA-CE-A3ME TCGA-DE-A0Y2 
        6.48         8.25         4.01         4.87         0.23         7.59 
TCGA-DJ-A13O TCGA-DJ-A13R TCGA-DJ-A13S TCGA-DJ-A1QD TCGA-DJ-A1QE TCGA-DJ-A1QG 
        7.07         3.02         8.71        10.98        65.85         6.97 
TCGA-DJ-A1QO TCGA-DJ-A2PP TCGA-DJ-A2PY TCGA-DJ-A2Q0 TCGA-DJ-A2Q8 TCGA-DJ-A2QB 
        1.02         5.00         8.78         8.12         7.07        10.85 
TCGA-DO-A1K0 TCGA-E3-A3DY TCGA-E3-A3E1 TCGA-E3-A3E3 TCGA-E3-A3E5 TCGA-E8-A2EA 
        3.06        31.07        40.18        20.88        14.04         0.36 
TCGA-EM-A1CT TCGA-EM-A1YA TCGA-EM-A1YB TCGA-EM-A1YC TCGA-EM-A22I TCGA-EM-A22J 
        5.03         7.13         9.34        46.72         2.66         6.81 
TCGA-EM-A22O TCGA-EM-A2CM TCGA-EM-A2CO TCGA-ET-A25G TCGA-ET-A25L TCGA-ET-A25M 
        6.21        11.74         6.02        35.77        14.79        12.33 
TCGA-ET-A25O TCGA-ET-A2MY TCGA-ET-A2N0 TCGA-ET-A39P TCGA-ET-A39T TCGA-ET-A3BT 
        4.44        19.04        34.49        13.35         7.79        24.72 
TCGA-ET-A3DO TCGA-ET-A3DW TCGA-FE-A22Z TCGA-FE-A230 TCGA-FE-A231 TCGA-FE-A232 
       65.92        24.69        51.45        47.41        12.30        44.25 
TCGA-FE-A234 TCGA-FE-A236 TCGA-FE-A237 TCGA-FE-A23A TCGA-FY-A3BL TCGA-IM-A3EB 
       43.82        65.88        65.92        62.70         1.15        35.18 
TCGA-J8-A3NZ 
        2.24 

$subtype3
TCGA-BJ-A0ZF TCGA-BJ-A191 TCGA-BJ-A28T TCGA-BJ-A28V TCGA-CE-A13K TCGA-CE-A27D 
        6.90         7.73         2.76         5.10         0.53         0.10 
TCGA-CE-A3MD TCGA-DE-A2OL TCGA-DJ-A13V TCGA-DJ-A1QI TCGA-DJ-A1QL TCGA-DJ-A1QN 
        0.20         5.29        11.90         4.96         6.97         8.98 
TCGA-DJ-A2PQ TCGA-DJ-A2PR TCGA-DJ-A2PS TCGA-DJ-A2PU TCGA-DJ-A2PW TCGA-DJ-A2Q1 
       20.48        10.45         1.94        10.26         7.69         9.34 
TCGA-DJ-A2Q4 TCGA-DJ-A2Q5 TCGA-DO-A1JZ TCGA-E3-A3E0 TCGA-E8-A2JQ TCGA-EM-A1CU 
        9.44         9.90        40.27        50.76        66.12         7.04 
TCGA-EM-A1CV TCGA-EM-A1YE TCGA-EM-A22M TCGA-EM-A22Q TCGA-EM-A2CN TCGA-EM-A2CP 
       66.08        21.37         3.48         6.31        11.31         2.96 
TCGA-EM-A2CR TCGA-EM-A2CS TCGA-ET-A2MZ TCGA-ET-A2N1 TCGA-ET-A2N4 TCGA-ET-A39J 
        7.17         9.34        12.26        14.76         1.41        11.90 
TCGA-ET-A39L TCGA-ET-A39M TCGA-ET-A39N TCGA-ET-A39R TCGA-ET-A3BN TCGA-ET-A3BS 
        1.94        65.88        65.88        46.45         1.68         5.52 
TCGA-ET-A3BU TCGA-ET-A3BV TCGA-ET-A3BW TCGA-ET-A3BX TCGA-ET-A3DS TCGA-ET-A3DT 
        1.28         1.84         2.37         4.50         0.30         4.77 
TCGA-ET-A3DV TCGA-FE-A233 TCGA-FE-A235 TCGA-FE-A239 TCGA-FY-A3ON TCGA-GE-A2C6 
       65.79        24.69        65.82        65.92         1.51         6.77 
TCGA-H2-A2K9 TCGA-IM-A3ED TCGA-J8-A3O1 
        4.77        30.87        13.64 

subtype1 subtype2 subtype3 
    0.30     0.23     0.10 
subtype1 subtype2 subtype3 
   50.50    65.92    66.12 
subtype1 subtype2 subtype3 
    8.09     9.34     7.69 
[1] "0.3 - 50.5 (8.1)" "0.2 - 65.9 (9.3)" "0.1 - 66.1 (7.7)"
  [1] "subtype1" "subtype1" "subtype1" "subtype1" "subtype2" "subtype2"
  [7] "subtype1" "subtype2" "subtype1" "subtype1" "subtype3" "subtype1"
 [13] "subtype1" "subtype1" "subtype1" "subtype3" "subtype1" "subtype2"
 [19] "subtype3" "subtype3" "subtype3" "subtype3" "subtype3" "subtype2"
 [25] "subtype2" "subtype3" "subtype1" "subtype1" "subtype2" "subtype2"
 [31] "subtype2" "subtype3" "subtype1" "subtype1" "subtype2" "subtype2"
 [37] "subtype1" "subtype2" "subtype3" "subtype3" "subtype1" "subtype3"
 [43] "subtype2" "subtype1" "subtype1" "subtype2" "subtype3" "subtype3"
 [49] "subtype3" "subtype3" "subtype1" "subtype3" "subtype2" "subtype1"
 [55] "subtype2" "subtype3" "subtype1" "subtype3" "subtype3" "subtype1"
 [61] "subtype1" "subtype2" "subtype1" "subtype1" "subtype2" "subtype1"
 [67] "subtype3" "subtype2" "subtype2" "subtype1" "subtype3" "subtype2"
 [73] "subtype2" "subtype2" "subtype2" "subtype3" "subtype2" "subtype3"
 [79] "subtype3" "subtype1" "subtype2" "subtype2" "subtype2" "subtype1"
 [85] "subtype3" "subtype2" "subtype2" "subtype1" "subtype3" "subtype2"
 [91] "subtype3" "subtype1" "subtype1" "subtype1" "subtype2" "subtype3"
 [97] "subtype2" "subtype3" "subtype1" "subtype3" "subtype3" "subtype1"
[103] "subtype2" "subtype2" "subtype2" "subtype2" "subtype2" "subtype3"
[109] "subtype2" "subtype3" "subtype3" "subtype1" "subtype1" "subtype3"
[115] "subtype3" "subtype3" "subtype3" "subtype2" "subtype3" "subtype2"
[121] "subtype3" "subtype1" "subtype3" "subtype2" "subtype3" "subtype3"
[127] "subtype3" "subtype3" "subtype2" "subtype1" "subtype3" "subtype3"
[133] "subtype3" "subtype2" "subtype2" "subtype2" "subtype2" "subtype2"
[139] "subtype3" "subtype2" "subtype3" "subtype2" "subtype2" "subtype3"
[145] "subtype2" "subtype1" "subtype2" "subtype3" "subtype3" "subtype3"
[151] "subtype2" "subtype3" "subtype2" "subtype1" "subtype3"
  [1] "subtype1" "subtype1" "subtype1" "subtype1" "subtype2" "subtype2"
  [7] "subtype1" "subtype2" "subtype1" "subtype1" "subtype3" "subtype1"
 [13] "subtype1" "subtype1" "subtype1" "subtype3" "subtype1" "subtype2"
 [19] "subtype3" "subtype3" "subtype3" "subtype3" "subtype3" "subtype2"
 [25] "subtype2" "subtype3" "subtype1" "subtype1" "subtype2" "subtype2"
 [31] "subtype2" "subtype3" "subtype1" "subtype1" "subtype2" "subtype2"
 [37] "subtype1" "subtype2" "subtype3" "subtype3" "subtype1" "subtype3"
 [43] "subtype2" "subtype1" "subtype1" "subtype2" "subtype3" "subtype3"
 [49] "subtype3" "subtype3" "subtype1" "subtype3" "subtype2" "subtype1"
 [55] "subtype2" "subtype3" "subtype1" "subtype3" "subtype3" "subtype1"
 [61] "subtype1" "subtype2" "subtype1" "subtype1" "subtype2" "subtype1"
 [67] "subtype3" "subtype2" "subtype2" "subtype1" "subtype3" "subtype2"
 [73] "subtype2" "subtype2" "subtype2" "subtype3" "subtype2" "subtype3"
 [79] "subtype3" "subtype1" "subtype2" "subtype2" "subtype2" "subtype1"
 [85] "subtype3" "subtype2" "subtype2" "subtype1" "subtype3" "subtype2"
 [91] "subtype3" "subtype1" "subtype1" "subtype1" "subtype2" "subtype3"
 [97] "subtype2" "subtype3" "subtype1" "subtype3" "subtype3" "subtype1"
[103] "subtype2" "subtype2" "subtype2" "subtype2" "subtype2" "subtype3"
[109] "subtype2" "subtype3" "subtype3" "subtype1" "subtype1" "subtype3"
[115] "subtype3" "subtype3" "subtype3" "subtype2" "subtype3" "subtype2"
[121] "subtype3" "subtype1" "subtype3" "subtype2" "subtype3" "subtype3"
[127] "subtype3" "subtype3" "subtype2" "subtype1" "subtype3" "subtype3"
[133] "subtype3" "subtype2" "subtype2" "subtype2" "subtype2" "subtype2"
[139] "subtype3" "subtype2" "subtype3" "subtype2" "subtype2" "subtype3"
[145] "subtype2" "subtype1" "subtype2" "subtype3" "subtype3" "subtype3"
[151] "subtype2" "subtype3" "subtype2" "subtype1" "subtype3"
  [1] "subtype1" "subtype1" "subtype1" "subtype1" "subtype2" "subtype2"
  [7] "subtype1" "subtype2" "subtype1" "subtype1" "subtype3" "subtype1"
 [13] "subtype1" "subtype1" "subtype1" "subtype3" "subtype1" "subtype2"
 [19] "subtype3" "subtype3" "subtype3" "subtype3" "subtype3" "subtype2"
 [25] "subtype2" "subtype3" "subtype1" "subtype1" "subtype2" "subtype2"
 [31] "subtype2" "subtype3" "subtype1" "subtype1" "subtype2" "subtype2"
 [37] "subtype1" "subtype2" "subtype3" "subtype3" "subtype1" "subtype3"
 [43] "subtype2" "subtype1" "subtype1" "subtype2" "subtype3" "subtype3"
 [49] "subtype3" "subtype3" "subtype1" "subtype3" "subtype2" "subtype1"
 [55] "subtype2" "subtype3" "subtype1" "subtype3" "subtype3" "subtype1"
 [61] "subtype1" "subtype2" "subtype1" "subtype1" "subtype2" "subtype1"
 [67] "subtype3" "subtype2" "subtype2" "subtype1" "subtype3" "subtype2"
 [73] "subtype2" "subtype2" "subtype2" "subtype3" "subtype2" "subtype3"
 [79] "subtype3" "subtype1" "subtype2" "subtype2" "subtype2" "subtype1"
 [85] "subtype3" "subtype2" "subtype2" "subtype1" "subtype3" "subtype2"
 [91] "subtype3" "subtype1" "subtype1" "subtype1" "subtype2" "subtype3"
 [97] "subtype2" "subtype3" "subtype1" "subtype3" "subtype3" "subtype1"
[103] "subtype2" "subtype2" "subtype2" "subtype2" "subtype2" "subtype3"
[109] "subtype2" "subtype3" "subtype3" "subtype1" "subtype1" "subtype3"
[115] "subtype3" "subtype3" "subtype3" "subtype2" "subtype3" "subtype2"
[121] "subtype3" "subtype1" "subtype3" "subtype2" "subtype3" "subtype3"
[127] "subtype3" "subtype3" "subtype2" "subtype1" "subtype3" "subtype3"
[133] "subtype3" "subtype2" "subtype2" "subtype2" "subtype2" "subtype2"
[139] "subtype3" "subtype2" "subtype3" "subtype2" "subtype2" "subtype3"
[145] "subtype2" "subtype1" "subtype2" "subtype3" "subtype3" "subtype3"
[151] "subtype2" "subtype3" "subtype2" "subtype1" "subtype3"
D3V2, continuous
D3V3, binary
          cls
clus        0  1
  subtype1 29 14
  subtype2 39 16
  subtype3 38 19
[1] "tbl2"
          cls
clus       [,1] [,2]
  subtype1   29   14
  subtype2   39   16
  subtype3   38   19
        clus
vv       subtype1 subtype2 subtype3
  FEMALE       29       39       38
  MALE         14       16       19
D3V4, multiclass
D3V5, binary
          cls
clus        0  1
  subtype1  0 43
  subtype2  9 46
  subtype3  4 53
[1] "tbl2"
          cls
clus       [,1] [,2]
  subtype1    0   43
  subtype2    9   46
  subtype3    4   53
     clus
vv    subtype1 subtype2 subtype3
  NO         0        9        4
  YES       43       46       53
D3V6, binary
          cls
clus        0  1
  subtype1 38  1
  subtype2 46  3
  subtype3 46  3
[1] "tbl2"
          cls
clus       [,1] [,2]
  subtype1   38    1
  subtype2   46    3
  subtype3   46    3
     clus
vv    subtype1 subtype2 subtype3
  NO        38       46       46
  YES        1        3        3

Clustering(4) Variable = RPPA_CHIERARCHICAL
D4V1, survival
          sevent
clus2       0  1
  subtype1 23  0
  subtype2 66  0
  subtype3 65  1
subtype1 subtype2 subtype3 
      23       66       66 
subtype1 subtype2 subtype3 
       0        0        1 
$subtype1
TCGA-BJ-A192 TCGA-DJ-A13R TCGA-DJ-A13S TCGA-DJ-A1QG TCGA-DJ-A2PP TCGA-DJ-A2Q0 
        8.09         3.02         8.71         6.97         5.00         8.12 
TCGA-DJ-A2QB TCGA-E3-A3DY TCGA-EM-A1YA TCGA-EM-A1YB TCGA-EM-A1YC TCGA-EM-A22I 
       10.85        31.07         7.13         9.34        46.72         2.66 
TCGA-EM-A22J TCGA-EM-A2CM TCGA-EM-A2CO TCGA-ET-A25O TCGA-ET-A2MY TCGA-ET-A2N0 
        6.81        11.74         6.02         4.44        19.04        34.49 
TCGA-ET-A39T TCGA-ET-A3BT TCGA-FE-A231 TCGA-FE-A237 TCGA-FY-A3BL 
        7.79        24.72        12.30        65.92         1.15 

$subtype2
TCGA-BJ-A0Z5 TCGA-BJ-A0Z9 TCGA-BJ-A0ZB TCGA-BJ-A191 TCGA-BJ-A28R TCGA-BJ-A28T 
        6.48         8.25         4.01         7.73         4.87         2.76 
TCGA-CE-A13K TCGA-CE-A27D TCGA-CE-A3MD TCGA-CE-A3ME TCGA-DE-A0Y2 TCGA-DJ-A13V 
        0.53         0.10         0.20         0.23         7.59        11.90 
TCGA-DJ-A1QD TCGA-DJ-A1QE TCGA-DJ-A1QF TCGA-DJ-A1QI TCGA-DJ-A1QN TCGA-DJ-A1QO 
       10.98        65.85        18.05         4.96         8.98         1.02 
TCGA-DJ-A2PR TCGA-DJ-A2PU TCGA-DJ-A2PW TCGA-DJ-A2PY TCGA-DJ-A2Q1 TCGA-DJ-A2Q4 
       10.45        10.26         7.69         8.78         9.34         9.44 
TCGA-DJ-A2Q5 TCGA-DJ-A2Q8 TCGA-DO-A1JZ TCGA-DO-A1K0 TCGA-E3-A3E0 TCGA-E3-A3E1 
        9.90         7.07        40.27         3.06        50.76        40.18 
TCGA-E3-A3E3 TCGA-E3-A3E5 TCGA-E8-A2EA TCGA-E8-A2JQ TCGA-EM-A1CU TCGA-EM-A1CV 
       20.88        14.04         0.36        66.12         7.04        66.08 
TCGA-EM-A22M TCGA-EM-A22O TCGA-EM-A2CS TCGA-ET-A25G TCGA-ET-A25L TCGA-ET-A2N4 
        3.48         6.21         9.34        35.77        14.79         1.41 
TCGA-ET-A39J TCGA-ET-A39M TCGA-ET-A39R TCGA-ET-A3BN TCGA-ET-A3BS TCGA-ET-A3BU 
       11.90        65.88        46.45         1.68         5.52         1.28 
TCGA-ET-A3BV TCGA-ET-A3BW TCGA-ET-A3BX TCGA-ET-A3DO TCGA-ET-A3DT TCGA-ET-A3DW 
        1.84         2.37         4.50        65.92         4.77        24.69 
TCGA-FE-A22Z TCGA-FE-A230 TCGA-FE-A233 TCGA-FE-A234 TCGA-FE-A235 TCGA-FE-A23A 
       51.45        47.41        24.69        43.82        65.82        62.70 
TCGA-FY-A3ON TCGA-GE-A2C6 TCGA-IM-A3EB TCGA-IM-A3ED TCGA-J8-A3NZ TCGA-J8-A3O1 
        1.51         6.77        35.18        30.87         2.24        13.64 

$subtype3
TCGA-BJ-A0YZ TCGA-BJ-A0Z0 TCGA-BJ-A0Z2 TCGA-BJ-A0Z3 TCGA-BJ-A0ZA TCGA-BJ-A0ZC 
       15.75        11.70         7.63         5.98         8.68         6.02 
TCGA-BJ-A0ZE TCGA-BJ-A0ZF TCGA-BJ-A0ZG TCGA-BJ-A0ZJ TCGA-BJ-A18Y TCGA-BJ-A190 
        7.79         6.90         7.56         5.00         2.79         0.43 
TCGA-BJ-A28V TCGA-DE-A2OL TCGA-DE-A3KN TCGA-DJ-A13M TCGA-DJ-A13O TCGA-DJ-A13W 
        5.10         5.29         9.40         9.01         7.07        14.93 
TCGA-DJ-A13X TCGA-DJ-A1QL TCGA-DJ-A1QM TCGA-DJ-A2PN TCGA-DJ-A2PO TCGA-DJ-A2PQ 
        7.99         6.97         0.99         9.99         7.96        20.48 
TCGA-DJ-A2PS TCGA-DJ-A2PV TCGA-DJ-A2PZ TCGA-DJ-A2Q2 TCGA-DJ-A2Q6 TCGA-DJ-A2Q7 
        1.94         7.96         8.42         6.77         8.61         9.57 
TCGA-DJ-A2Q9 TCGA-DJ-A2QA TCGA-DJ-A2QC TCGA-E3-A3DZ TCGA-EM-A1CT TCGA-EM-A1CW 
       10.36        12.43         9.99        12.00         5.03         8.05 
TCGA-EM-A1YD TCGA-EM-A1YE TCGA-EM-A22L TCGA-EM-A22Q TCGA-EM-A2CJ TCGA-EM-A2CK 
       39.75        21.37         4.54         6.31        11.44         8.19 
TCGA-EM-A2CL TCGA-EM-A2CN TCGA-EM-A2CP TCGA-EM-A2CQ TCGA-EM-A2CR TCGA-EM-A2CU 
        6.87        11.31         2.96         6.54         7.17         5.79 
TCGA-ET-A25M TCGA-ET-A2MZ TCGA-ET-A2N1 TCGA-ET-A2N5 TCGA-ET-A39I TCGA-ET-A39L 
       12.33        12.26        14.76        38.86         0.30         1.94 
TCGA-ET-A39N TCGA-ET-A39P TCGA-ET-A3BP TCGA-ET-A3DP TCGA-ET-A3DS TCGA-ET-A3DV 
       65.88        13.35         4.18        50.50         0.30        65.79 
TCGA-FE-A232 TCGA-FE-A236 TCGA-FE-A239 TCGA-FY-A2QD TCGA-H2-A2K9 TCGA-J8-A3O0 
       44.25        65.88        65.92         1.25         4.77        12.89 

subtype1 subtype2 subtype3 
    1.15     0.10     0.30 
subtype1 subtype2 subtype3 
   65.92    66.12    65.92 
subtype1 subtype2 subtype3 
    8.12     9.16     8.02 
[1] "1.1 - 65.9 (8.1)" "0.1 - 66.1 (9.2)" "0.3 - 65.9 (8.0)"
  [1] "subtype3" "subtype3" "subtype3" "subtype3" "subtype2" "subtype2"
  [7] "subtype3" "subtype2" "subtype3" "subtype3" "subtype3" "subtype3"
 [13] "subtype3" "subtype3" "subtype3" "subtype2" "subtype1" "subtype2"
 [19] "subtype2" "subtype3" "subtype2" "subtype2" "subtype2" "subtype2"
 [25] "subtype2" "subtype3" "subtype3" "subtype3" "subtype3" "subtype1"
 [31] "subtype1" "subtype2" "subtype3" "subtype3" "subtype2" "subtype2"
 [37] "subtype2" "subtype1" "subtype2" "subtype3" "subtype3" "subtype2"
 [43] "subtype2" "subtype3" "subtype3" "subtype1" "subtype3" "subtype2"
 [49] "subtype3" "subtype2" "subtype3" "subtype2" "subtype2" "subtype3"
 [55] "subtype1" "subtype2" "subtype3" "subtype2" "subtype2" "subtype3"
 [61] "subtype3" "subtype2" "subtype3" "subtype3" "subtype1" "subtype3"
 [67] "subtype2" "subtype2" "subtype1" "subtype3" "subtype2" "subtype2"
 [73] "subtype2" "subtype2" "subtype2" "subtype2" "subtype3" "subtype2"
 [79] "subtype2" "subtype3" "subtype1" "subtype1" "subtype1" "subtype3"
 [85] "subtype3" "subtype1" "subtype1" "subtype3" "subtype2" "subtype2"
 [91] "subtype3" "subtype3" "subtype3" "subtype3" "subtype1" "subtype3"
 [97] "subtype1" "subtype3" "subtype3" "subtype3" "subtype2" "subtype3"
[103] "subtype2" "subtype2" "subtype3" "subtype1" "subtype1" "subtype3"
[109] "subtype1" "subtype3" "subtype2" "subtype3" "subtype3" "subtype2"
[115] "subtype3" "subtype2" "subtype3" "subtype3" "subtype2" "subtype1"
[121] "subtype2" "subtype3" "subtype2" "subtype1" "subtype2" "subtype2"
[127] "subtype2" "subtype2" "subtype2" "subtype3" "subtype3" "subtype2"
[133] "subtype3" "subtype2" "subtype2" "subtype2" "subtype1" "subtype3"
[139] "subtype2" "subtype2" "subtype2" "subtype3" "subtype1" "subtype3"
[145] "subtype2" "subtype3" "subtype1" "subtype2" "subtype2" "subtype3"
[151] "subtype2" "subtype2" "subtype2" "subtype3" "subtype2"
  [1] "subtype3" "subtype3" "subtype3" "subtype3" "subtype2" "subtype2"
  [7] "subtype3" "subtype2" "subtype3" "subtype3" "subtype3" "subtype3"
 [13] "subtype3" "subtype3" "subtype3" "subtype2" "subtype1" "subtype2"
 [19] "subtype2" "subtype3" "subtype2" "subtype2" "subtype2" "subtype2"
 [25] "subtype2" "subtype3" "subtype3" "subtype3" "subtype3" "subtype1"
 [31] "subtype1" "subtype2" "subtype3" "subtype3" "subtype2" "subtype2"
 [37] "subtype2" "subtype1" "subtype2" "subtype3" "subtype3" "subtype2"
 [43] "subtype2" "subtype3" "subtype3" "subtype1" "subtype3" "subtype2"
 [49] "subtype3" "subtype2" "subtype3" "subtype2" "subtype2" "subtype3"
 [55] "subtype1" "subtype2" "subtype3" "subtype2" "subtype2" "subtype3"
 [61] "subtype3" "subtype2" "subtype3" "subtype3" "subtype1" "subtype3"
 [67] "subtype2" "subtype2" "subtype1" "subtype3" "subtype2" "subtype2"
 [73] "subtype2" "subtype2" "subtype2" "subtype2" "subtype3" "subtype2"
 [79] "subtype2" "subtype3" "subtype1" "subtype1" "subtype1" "subtype3"
 [85] "subtype3" "subtype1" "subtype1" "subtype3" "subtype2" "subtype2"
 [91] "subtype3" "subtype3" "subtype3" "subtype3" "subtype1" "subtype3"
 [97] "subtype1" "subtype3" "subtype3" "subtype3" "subtype2" "subtype3"
[103] "subtype2" "subtype2" "subtype3" "subtype1" "subtype1" "subtype3"
[109] "subtype1" "subtype3" "subtype2" "subtype3" "subtype3" "subtype2"
[115] "subtype3" "subtype2" "subtype3" "subtype3" "subtype2" "subtype1"
[121] "subtype2" "subtype3" "subtype2" "subtype1" "subtype2" "subtype2"
[127] "subtype2" "subtype2" "subtype2" "subtype3" "subtype3" "subtype2"
[133] "subtype3" "subtype2" "subtype2" "subtype2" "subtype1" "subtype3"
[139] "subtype2" "subtype2" "subtype2" "subtype3" "subtype1" "subtype3"
[145] "subtype2" "subtype3" "subtype1" "subtype2" "subtype2" "subtype3"
[151] "subtype2" "subtype2" "subtype2" "subtype3" "subtype2"
  [1] "subtype3" "subtype3" "subtype3" "subtype3" "subtype2" "subtype2"
  [7] "subtype3" "subtype2" "subtype3" "subtype3" "subtype3" "subtype3"
 [13] "subtype3" "subtype3" "subtype3" "subtype2" "subtype1" "subtype2"
 [19] "subtype2" "subtype3" "subtype2" "subtype2" "subtype2" "subtype2"
 [25] "subtype2" "subtype3" "subtype3" "subtype3" "subtype3" "subtype1"
 [31] "subtype1" "subtype2" "subtype3" "subtype3" "subtype2" "subtype2"
 [37] "subtype2" "subtype1" "subtype2" "subtype3" "subtype3" "subtype2"
 [43] "subtype2" "subtype3" "subtype3" "subtype1" "subtype3" "subtype2"
 [49] "subtype3" "subtype2" "subtype3" "subtype2" "subtype2" "subtype3"
 [55] "subtype1" "subtype2" "subtype3" "subtype2" "subtype2" "subtype3"
 [61] "subtype3" "subtype2" "subtype3" "subtype3" "subtype1" "subtype3"
 [67] "subtype2" "subtype2" "subtype1" "subtype3" "subtype2" "subtype2"
 [73] "subtype2" "subtype2" "subtype2" "subtype2" "subtype3" "subtype2"
 [79] "subtype2" "subtype3" "subtype1" "subtype1" "subtype1" "subtype3"
 [85] "subtype3" "subtype1" "subtype1" "subtype3" "subtype2" "subtype2"
 [91] "subtype3" "subtype3" "subtype3" "subtype3" "subtype1" "subtype3"
 [97] "subtype1" "subtype3" "subtype3" "subtype3" "subtype2" "subtype3"
[103] "subtype2" "subtype2" "subtype3" "subtype1" "subtype1" "subtype3"
[109] "subtype1" "subtype3" "subtype2" "subtype3" "subtype3" "subtype2"
[115] "subtype3" "subtype2" "subtype3" "subtype3" "subtype2" "subtype1"
[121] "subtype2" "subtype3" "subtype2" "subtype1" "subtype2" "subtype2"
[127] "subtype2" "subtype2" "subtype2" "subtype3" "subtype3" "subtype2"
[133] "subtype3" "subtype2" "subtype2" "subtype2" "subtype1" "subtype3"
[139] "subtype2" "subtype2" "subtype2" "subtype3" "subtype1" "subtype3"
[145] "subtype2" "subtype3" "subtype1" "subtype2" "subtype2" "subtype3"
[151] "subtype2" "subtype2" "subtype2" "subtype3" "subtype2"
D4V2, continuous
D4V3, binary
          cls
clus        0  1
  subtype1 17  6
  subtype2 48 18
  subtype3 41 25
[1] "tbl2"
          cls
clus       [,1] [,2]
  subtype1   17    6
  subtype2   48   18
  subtype3   41   25
        clus
vv       subtype1 subtype2 subtype3
  FEMALE       17       48       41
  MALE          6       18       25
D4V4, multiclass
D4V5, binary
          cls
clus        0  1
  subtype1  2 21
  subtype2  8 58
  subtype3  3 63
[1] "tbl2"
          cls
clus       [,1] [,2]
  subtype1    2   21
  subtype2    8   58
  subtype3    3   63
     clus
vv    subtype1 subtype2 subtype3
  NO         2        8        3
  YES       21       58       63
D4V6, binary
          cls
clus        0  1
  subtype1 19  3
  subtype2 52  3
  subtype3 59  1
[1] "tbl2"
          cls
clus       [,1] [,2]
  subtype1   19    3
  subtype2   52    3
  subtype3   59    1
     clus
vv    subtype1 subtype2 subtype3
  NO        19       52       59
  YES        3        3        1

Clustering(5) Variable = MRNASEQ_CNMF
D5V1, survival
          sevent
clus2       0  1
  subtype1 63  1
  subtype2 22  0
  subtype3 47  0
  subtype4 65  0
subtype1 subtype2 subtype3 subtype4 
      64       22       47       65 
subtype1 subtype2 subtype3 subtype4 
       1        0        0        0 
$subtype1
TCGA-BJ-A0YZ TCGA-BJ-A0Z0 TCGA-BJ-A0Z2 TCGA-BJ-A0ZA TCGA-BJ-A0ZC TCGA-BJ-A0ZE 
       15.75        11.70         7.63         8.68         6.02         7.79 
TCGA-BJ-A0ZF TCGA-BJ-A0ZG TCGA-BJ-A18Y TCGA-BJ-A190 TCGA-BJ-A192 TCGA-BJ-A28V 
        6.90         7.56         2.79         0.43         8.09         5.10 
TCGA-BJ-A3PT TCGA-DE-A2OL TCGA-DJ-A13M TCGA-DJ-A13R TCGA-DJ-A13W TCGA-DJ-A1QG 
       12.07         5.29         9.01         3.02        14.93         6.97 
TCGA-DJ-A1QL TCGA-DJ-A1QM TCGA-DJ-A2PP TCGA-DJ-A2Q0 TCGA-DJ-A2Q2 TCGA-DJ-A2QB 
        6.97         0.99         5.00         8.12         6.77        10.85 
TCGA-DJ-A3US TCGA-E3-A3DZ TCGA-E8-A415 TCGA-E8-A416 TCGA-EM-A1CW TCGA-EM-A1YA 
       20.71        12.00         0.16         0.72         8.05         7.13 
TCGA-EM-A1YB TCGA-EM-A1YC TCGA-EM-A1YD TCGA-EM-A1YE TCGA-EM-A22J TCGA-EM-A22K 
        9.34        46.72        39.75        21.37         6.81         6.64 
TCGA-EM-A22L TCGA-EM-A22N TCGA-EM-A2CK TCGA-EM-A2CL TCGA-EM-A2CM TCGA-EM-A2CN 
        4.54         6.87         8.19         6.87        11.74        11.31 
TCGA-EM-A2CO TCGA-EM-A2CP TCGA-EM-A2CQ TCGA-EM-A2CT TCGA-ET-A25I TCGA-ET-A25P 
        6.02         2.96         6.54        10.49         0.33         0.49 
TCGA-ET-A39I TCGA-ET-A39L TCGA-ET-A39N TCGA-ET-A3DR TCGA-ET-A3DS TCGA-ET-A3DV 
        0.30         1.94        65.88         2.14         0.30        65.79 
TCGA-FE-A239 TCGA-FY-A2QD TCGA-FY-A3I5 TCGA-FY-A3NM TCGA-FY-A3NP TCGA-FY-A3R7 
       65.92         1.25         1.64         0.99         0.59         0.03 
TCGA-FY-A3R9 TCGA-H2-A2K9 TCGA-H2-A3RH TCGA-J8-A3O0 
        2.17         4.77         4.87        12.89 

$subtype2
TCGA-BJ-A0Z3 TCGA-BJ-A0ZJ TCGA-BJ-A28T TCGA-BJ-A3PR TCGA-CE-A27D TCGA-DJ-A13O 
        5.98         5.00         2.76         8.02         0.10         7.07 
TCGA-DJ-A2PX TCGA-DJ-A2Q1 TCGA-DJ-A2Q3 TCGA-DJ-A2Q9 TCGA-E8-A2JQ TCGA-E8-A413 
        5.03         9.34         9.21        10.36        66.12         0.33 
TCGA-E8-A414 TCGA-EM-A22P TCGA-ET-A39R TCGA-ET-A3BO TCGA-ET-A3DQ TCGA-FE-A3PB 
        0.23         5.72        46.45         5.82        44.91        65.88 
TCGA-FY-A3R6 TCGA-GE-A2C6 TCGA-H2-A26U TCGA-J8-A3O2 
        0.76         6.77         3.48         1.35 

$subtype3
TCGA-BJ-A0Z5 TCGA-CE-A13K TCGA-CE-A3MD TCGA-DE-A0XZ TCGA-DE-A3KN TCGA-DJ-A13P 
        6.48         0.53         0.20        13.22         9.40        65.72 
TCGA-DJ-A13T TCGA-DJ-A13V TCGA-DJ-A13X TCGA-DJ-A1QF TCGA-DJ-A1QI TCGA-DJ-A1QN 
       24.92        11.90         7.99        18.05         4.96         8.98 
TCGA-DJ-A2PO TCGA-DJ-A2PQ TCGA-DJ-A2PR TCGA-DJ-A2PS TCGA-DJ-A2PU TCGA-DJ-A2PV 
        7.96        20.48        10.45         1.94        10.26         7.96 
TCGA-DJ-A2Q5 TCGA-DJ-A2Q6 TCGA-DJ-A2Q7 TCGA-DJ-A2QA TCGA-DJ-A2QC TCGA-DJ-A3UN 
        9.90         8.61         9.57        12.43         9.99        12.49 
TCGA-DO-A1JZ TCGA-E3-A3DY TCGA-E3-A3E0 TCGA-E3-A3E2 TCGA-E3-A3E5 TCGA-EM-A1CS 
       40.27        31.07        50.76        46.72        14.04        19.07 
TCGA-EM-A1CV TCGA-EM-A2CS TCGA-ET-A25K TCGA-ET-A25O TCGA-ET-A2MZ TCGA-ET-A2N4 
       66.08         9.34        19.36         4.44        12.26         1.41 
TCGA-ET-A39J TCGA-ET-A39S TCGA-ET-A3BP TCGA-ET-A3BQ TCGA-ET-A3BS TCGA-ET-A3BW 
       11.90         0.66         4.18         2.43         5.52         2.37 
TCGA-ET-A3DP TCGA-FE-A3PA TCGA-FE-A3PD TCGA-FY-A3NN TCGA-H2-A3RI 
       50.50        65.82        62.89        66.12         2.96 

$subtype4
TCGA-BJ-A0Z9 TCGA-BJ-A0ZB TCGA-BJ-A0ZH TCGA-BJ-A28R TCGA-CE-A3ME TCGA-DE-A0Y2 
        8.25         4.01         0.72         4.87         0.23         7.59 
TCGA-DE-A0Y3 TCGA-DJ-A13U TCGA-DJ-A1QD TCGA-DJ-A1QE TCGA-DJ-A1QH TCGA-DJ-A1QO 
       31.30        12.92        10.98        65.85         7.99         1.02 
TCGA-DJ-A1QQ TCGA-DJ-A2PN TCGA-DJ-A2PW TCGA-DJ-A2PY TCGA-DJ-A2PZ TCGA-DJ-A2Q4 
        5.95         9.99         7.69         8.78         8.42         9.44 
TCGA-DJ-A3UY TCGA-DO-A1K0 TCGA-E3-A3E1 TCGA-E3-A3E3 TCGA-E8-A242 TCGA-E8-A3X7 
       13.32         3.06        40.18        20.88         1.12         1.48 
TCGA-E8-A417 TCGA-E8-A418 TCGA-EM-A1CT TCGA-EM-A1CU TCGA-EM-A22I TCGA-ET-A25G 
        0.26         1.48         5.03         7.04         2.66        35.77 
TCGA-ET-A25J TCGA-ET-A25L TCGA-ET-A25M TCGA-ET-A25N TCGA-ET-A25R TCGA-ET-A2MY 
       29.69        14.79        12.33         2.47        20.42        19.04 
TCGA-ET-A2N0 TCGA-ET-A39O TCGA-ET-A39P TCGA-ET-A39T TCGA-ET-A3BN TCGA-ET-A3BT 
       34.49        43.04        13.35         7.79         1.68        24.72 
TCGA-ET-A3BU TCGA-ET-A3BX TCGA-ET-A3DO TCGA-ET-A3DW TCGA-FE-A22Z TCGA-FE-A230 
        1.28         4.50        65.92        24.69        51.45        47.41 
TCGA-FE-A231 TCGA-FE-A233 TCGA-FE-A234 TCGA-FE-A236 TCGA-FE-A237 TCGA-FE-A238 
       12.30        24.69        43.82        65.88        65.92        39.95 
TCGA-FE-A23A TCGA-FE-A3PC TCGA-FY-A3BL TCGA-FY-A3ON TCGA-FY-A3RA TCGA-IM-A3EB 
       62.70        61.41         1.15         1.51         9.14        35.18 
TCGA-IM-A3ED TCGA-IM-A3U2 TCGA-IM-A3U3 TCGA-J8-A3NZ TCGA-J8-A3O1 
       30.87         2.63         3.25         2.24        13.64 

subtype1 subtype2 subtype3 subtype4 
    0.03     0.10     0.20     0.23 
subtype1 subtype2 subtype3 subtype4 
   65.92    66.12    66.12    65.92 
subtype1 subtype2 subtype3 subtype4 
    6.87     5.90    10.26     9.99 
[1] "0.0 - 65.9 (6.9)"  "0.1 - 66.1 (5.9)"  "0.2 - 66.1 (10.3)"
[4] "0.2 - 65.9 (10.0)"
  [1] "subtype1" "subtype1" "subtype1" "subtype2" "subtype3" "subtype4"
  [7] "subtype1" "subtype4" "subtype1" "subtype1" "subtype1" "subtype1"
 [13] "subtype4" "subtype2" "subtype1" "subtype1" "subtype1" "subtype4"
 [19] "subtype2" "subtype1" "subtype2" "subtype1" "subtype3" "subtype2"
 [25] "subtype3" "subtype4" "subtype3" "subtype4" "subtype4" "subtype1"
 [31] "subtype3" "subtype1" "subtype2" "subtype3" "subtype1" "subtype3"
 [37] "subtype4" "subtype3" "subtype1" "subtype3" "subtype4" "subtype4"
 [43] "subtype3" "subtype1" "subtype4" "subtype3" "subtype1" "subtype1"
 [49] "subtype3" "subtype4" "subtype4" "subtype4" "subtype3" "subtype1"
 [55] "subtype3" "subtype3" "subtype3" "subtype3" "subtype3" "subtype4"
 [61] "subtype2" "subtype4" "subtype4" "subtype1" "subtype2" "subtype1"
 [67] "subtype2" "subtype4" "subtype3" "subtype3" "subtype3" "subtype2"
 [73] "subtype3" "subtype1" "subtype3" "subtype3" "subtype1" "subtype4"
 [79] "subtype3" "subtype4" "subtype3" "subtype1" "subtype3" "subtype4"
 [85] "subtype3" "subtype4" "subtype3" "subtype4" "subtype2" "subtype4"
 [91] "subtype2" "subtype2" "subtype1" "subtype1" "subtype4" "subtype4"
 [97] "subtype3" "subtype4" "subtype4" "subtype3" "subtype1" "subtype1"
[103] "subtype1" "subtype1" "subtype1" "subtype1" "subtype4" "subtype1"
[109] "subtype1" "subtype1" "subtype1" "subtype2" "subtype1" "subtype1"
[115] "subtype1" "subtype1" "subtype1" "subtype1" "subtype1" "subtype3"
[121] "subtype1" "subtype4" "subtype1" "subtype4" "subtype3" "subtype4"
[127] "subtype4" "subtype4" "subtype3" "subtype1" "subtype4" "subtype4"
[133] "subtype3" "subtype4" "subtype3" "subtype1" "subtype3" "subtype1"
[139] "subtype1" "subtype4" "subtype4" "subtype2" "subtype3" "subtype4"
[145] "subtype4" "subtype2" "subtype3" "subtype3" "subtype3" "subtype4"
[151] "subtype4" "subtype3" "subtype4" "subtype4" "subtype3" "subtype2"
[157] "subtype1" "subtype1" "subtype1" "subtype4" "subtype4" "subtype4"
[163] "subtype4" "subtype4" "subtype4" "subtype4" "subtype4" "subtype4"
[169] "subtype1" "subtype4" "subtype3" "subtype2" "subtype4" "subtype3"
[175] "subtype1" "subtype4" "subtype1" "subtype1" "subtype3" "subtype1"
[181] "subtype4" "subtype2" "subtype1" "subtype1" "subtype4" "subtype2"
[187] "subtype2" "subtype1" "subtype1" "subtype3" "subtype4" "subtype4"
[193] "subtype4" "subtype4" "subtype4" "subtype1" "subtype4" "subtype2"
  [1] "subtype1" "subtype1" "subtype1" "subtype2" "subtype3" "subtype4"
  [7] "subtype1" "subtype4" "subtype1" "subtype1" "subtype1" "subtype1"
 [13] "subtype4" "subtype2" "subtype1" "subtype1" "subtype1" "subtype4"
 [19] "subtype2" "subtype1" "subtype2" "subtype1" "subtype3" "subtype2"
 [25] "subtype3" "subtype4" "subtype3" "subtype4" "subtype4" "subtype1"
 [31] "subtype3" "subtype1" "subtype2" "subtype3" "subtype1" "subtype3"
 [37] "subtype4" "subtype3" "subtype1" "subtype3" "subtype4" "subtype4"
 [43] "subtype3" "subtype1" "subtype4" "subtype3" "subtype1" "subtype1"
 [49] "subtype3" "subtype4" "subtype4" "subtype4" "subtype3" "subtype1"
 [55] "subtype3" "subtype3" "subtype3" "subtype3" "subtype3" "subtype4"
 [61] "subtype2" "subtype4" "subtype4" "subtype1" "subtype2" "subtype1"
 [67] "subtype2" "subtype4" "subtype3" "subtype3" "subtype3" "subtype2"
 [73] "subtype3" "subtype1" "subtype3" "subtype3" "subtype1" "subtype4"
 [79] "subtype3" "subtype4" "subtype3" "subtype1" "subtype3" "subtype4"
 [85] "subtype3" "subtype4" "subtype3" "subtype4" "subtype2" "subtype4"
 [91] "subtype2" "subtype2" "subtype1" "subtype1" "subtype4" "subtype4"
 [97] "subtype3" "subtype4" "subtype4" "subtype3" "subtype1" "subtype1"
[103] "subtype1" "subtype1" "subtype1" "subtype1" "subtype4" "subtype1"
[109] "subtype1" "subtype1" "subtype1" "subtype2" "subtype1" "subtype1"
[115] "subtype1" "subtype1" "subtype1" "subtype1" "subtype1" "subtype3"
[121] "subtype1" "subtype4" "subtype1" "subtype4" "subtype3" "subtype4"
[127] "subtype4" "subtype4" "subtype3" "subtype1" "subtype4" "subtype4"
[133] "subtype3" "subtype4" "subtype3" "subtype1" "subtype3" "subtype1"
[139] "subtype1" "subtype4" "subtype4" "subtype2" "subtype3" "subtype4"
[145] "subtype4" "subtype2" "subtype3" "subtype3" "subtype3" "subtype4"
[151] "subtype4" "subtype3" "subtype4" "subtype4" "subtype3" "subtype2"
[157] "subtype1" "subtype1" "subtype1" "subtype4" "subtype4" "subtype4"
[163] "subtype4" "subtype4" "subtype4" "subtype4" "subtype4" "subtype4"
[169] "subtype1" "subtype4" "subtype3" "subtype2" "subtype4" "subtype3"
[175] "subtype1" "subtype4" "subtype1" "subtype1" "subtype3" "subtype1"
[181] "subtype4" "subtype2" "subtype1" "subtype1" "subtype4" "subtype2"
[187] "subtype2" "subtype1" "subtype1" "subtype3" "subtype4" "subtype4"
[193] "subtype4" "subtype4" "subtype4" "subtype1" "subtype4" "subtype2"
  [1] "subtype1" "subtype1" "subtype1" "subtype2" "subtype3" "subtype4"
  [7] "subtype1" "subtype4" "subtype1" "subtype1" "subtype1" "subtype1"
 [13] "subtype4" "subtype2" "subtype1" "subtype1" "subtype1" "subtype4"
 [19] "subtype2" "subtype1" "subtype2" "subtype1" "subtype3" "subtype2"
 [25] "subtype3" "subtype4" "subtype3" "subtype4" "subtype4" "subtype1"
 [31] "subtype3" "subtype1" "subtype2" "subtype3" "subtype1" "subtype3"
 [37] "subtype4" "subtype3" "subtype1" "subtype3" "subtype4" "subtype4"
 [43] "subtype3" "subtype1" "subtype4" "subtype3" "subtype1" "subtype1"
 [49] "subtype3" "subtype4" "subtype4" "subtype4" "subtype3" "subtype1"
 [55] "subtype3" "subtype3" "subtype3" "subtype3" "subtype3" "subtype4"
 [61] "subtype2" "subtype4" "subtype4" "subtype1" "subtype2" "subtype1"
 [67] "subtype2" "subtype4" "subtype3" "subtype3" "subtype3" "subtype2"
 [73] "subtype3" "subtype1" "subtype3" "subtype3" "subtype1" "subtype4"
 [79] "subtype3" "subtype4" "subtype3" "subtype1" "subtype3" "subtype4"
 [85] "subtype3" "subtype4" "subtype3" "subtype4" "subtype2" "subtype4"
 [91] "subtype2" "subtype2" "subtype1" "subtype1" "subtype4" "subtype4"
 [97] "subtype3" "subtype4" "subtype4" "subtype3" "subtype1" "subtype1"
[103] "subtype1" "subtype1" "subtype1" "subtype1" "subtype4" "subtype1"
[109] "subtype1" "subtype1" "subtype1" "subtype2" "subtype1" "subtype1"
[115] "subtype1" "subtype1" "subtype1" "subtype1" "subtype1" "subtype3"
[121] "subtype1" "subtype4" "subtype1" "subtype4" "subtype3" "subtype4"
[127] "subtype4" "subtype4" "subtype3" "subtype1" "subtype4" "subtype4"
[133] "subtype3" "subtype4" "subtype3" "subtype1" "subtype3" "subtype1"
[139] "subtype1" "subtype4" "subtype4" "subtype2" "subtype3" "subtype4"
[145] "subtype4" "subtype2" "subtype3" "subtype3" "subtype3" "subtype4"
[151] "subtype4" "subtype3" "subtype4" "subtype4" "subtype3" "subtype2"
[157] "subtype1" "subtype1" "subtype1" "subtype4" "subtype4" "subtype4"
[163] "subtype4" "subtype4" "subtype4" "subtype4" "subtype4" "subtype4"
[169] "subtype1" "subtype4" "subtype3" "subtype2" "subtype4" "subtype3"
[175] "subtype1" "subtype4" "subtype1" "subtype1" "subtype3" "subtype1"
[181] "subtype4" "subtype2" "subtype1" "subtype1" "subtype4" "subtype2"
[187] "subtype2" "subtype1" "subtype1" "subtype3" "subtype4" "subtype4"
[193] "subtype4" "subtype4" "subtype4" "subtype1" "subtype4" "subtype2"
D5V2, continuous
D5V3, binary
          cls
clus        0  1
  subtype1 45 19
  subtype2 18  4
  subtype3 36 11
  subtype4 47 18
[1] "tbl2"
          cls
clus       [,1] [,2]
  subtype1   45   19
  subtype2   18    4
  subtype3   36   11
  subtype4   47   18
        clus
vv       subtype1 subtype2 subtype3 subtype4
  FEMALE       45       18       36       47
  MALE         19        4       11       18
D5V4, multiclass
D5V5, binary
          cls
clus        0  1
  subtype1  1 63
  subtype2  0 22
  subtype3  1 46
  subtype4 10 55
[1] "tbl2"
          cls
clus       [,1] [,2]
  subtype1    1   63
  subtype2    0   22
  subtype3    1   46
  subtype4   10   55
     clus
vv    subtype1 subtype2 subtype3 subtype4
  NO         1        0        1       10
  YES       63       22       46       55
D5V6, binary
          cls
clus        0  1
  subtype1 52  3
  subtype2 18  0
  subtype3 37  3
  subtype4 55  2
[1] "tbl2"
          cls
clus       [,1] [,2]
  subtype1   52    3
  subtype2   18    0
  subtype3   37    3
  subtype4   55    2
     clus
vv    subtype1 subtype2 subtype3 subtype4
  NO        52       18       37       55
  YES        3        0        3        2

Clustering(6) Variable = MRNASEQ_CHIERARCHICAL
D6V1, survival
          sevent
clus2       0  1
  subtype1 89  0
  subtype2 34  0
  subtype3 74  1
subtype1 subtype2 subtype3 
      89       34       75 
subtype1 subtype2 subtype3 
       0        0        1 
$subtype1
TCGA-BJ-A0Z3 TCGA-BJ-A0Z5 TCGA-BJ-A0Z9 TCGA-BJ-A0ZB TCGA-BJ-A0ZH TCGA-BJ-A28R 
        5.98         6.48         8.25         4.01         0.72         4.87 
TCGA-BJ-A3PR TCGA-CE-A3ME TCGA-DE-A0XZ TCGA-DE-A0Y2 TCGA-DE-A0Y3 TCGA-DJ-A13U 
        8.02         0.23        13.22         7.59        31.30        12.92 
TCGA-DJ-A1QD TCGA-DJ-A1QE TCGA-DJ-A1QH TCGA-DJ-A1QO TCGA-DJ-A1QQ TCGA-DJ-A2PN 
       10.98        65.85         7.99         1.02         5.95         9.99 
TCGA-DJ-A2PO TCGA-DJ-A2PR TCGA-DJ-A2PX TCGA-DJ-A2PY TCGA-DJ-A2PZ TCGA-DJ-A2Q1 
        7.96        10.45         5.03         8.78         8.42         9.34 
TCGA-DJ-A2Q3 TCGA-DJ-A2Q4 TCGA-DJ-A2Q5 TCGA-DJ-A2Q6 TCGA-DJ-A2Q9 TCGA-DO-A1K0 
        9.21         9.44         9.90         8.61        10.36         3.06 
TCGA-E3-A3DY TCGA-E3-A3E1 TCGA-E3-A3E2 TCGA-E3-A3E3 TCGA-E8-A242 TCGA-E8-A2JQ 
       31.07        40.18        46.72        20.88         1.12        66.12 
TCGA-E8-A3X7 TCGA-E8-A417 TCGA-E8-A418 TCGA-EM-A1CT TCGA-EM-A1CU TCGA-EM-A22I 
        1.48         0.26         1.48         5.03         7.04         2.66 
TCGA-EM-A22P TCGA-ET-A25G TCGA-ET-A25J TCGA-ET-A25L TCGA-ET-A25M TCGA-ET-A25N 
        5.72        35.77        29.69        14.79        12.33         2.47 
TCGA-ET-A25R TCGA-ET-A2MY TCGA-ET-A2N0 TCGA-ET-A39O TCGA-ET-A39P TCGA-ET-A39R 
       20.42        19.04        34.49        43.04        13.35        46.45 
TCGA-ET-A39T TCGA-ET-A3BN TCGA-ET-A3BO TCGA-ET-A3BS TCGA-ET-A3BT TCGA-ET-A3BU 
        7.79         1.68         5.82         5.52        24.72         1.28 
TCGA-ET-A3BX TCGA-ET-A3DO TCGA-ET-A3DP TCGA-ET-A3DR TCGA-ET-A3DW TCGA-FE-A22Z 
        4.50        65.92        50.50         2.14        24.69        51.45 
TCGA-FE-A230 TCGA-FE-A231 TCGA-FE-A233 TCGA-FE-A234 TCGA-FE-A236 TCGA-FE-A237 
       47.41        12.30        24.69        43.82        65.88        65.92 
TCGA-FE-A238 TCGA-FE-A23A TCGA-FE-A3PB TCGA-FE-A3PC TCGA-FY-A3BL TCGA-FY-A3NN 
       39.95        62.70        65.88        61.41         1.15        66.12 
TCGA-FY-A3ON TCGA-FY-A3RA TCGA-GE-A2C6 TCGA-H2-A26U TCGA-H2-A3RI TCGA-IM-A3EB 
        1.51         9.14         6.77         3.48         2.96        35.18 
TCGA-IM-A3ED TCGA-IM-A3U2 TCGA-IM-A3U3 TCGA-J8-A3NZ TCGA-J8-A3O1 
       30.87         2.63         3.25         2.24        13.64 

$subtype2
TCGA-CE-A13K TCGA-CE-A3MD TCGA-DE-A3KN TCGA-DJ-A13P TCGA-DJ-A13T TCGA-DJ-A13V 
        0.53         0.20         9.40        65.72        24.92        11.90 
TCGA-DJ-A13X TCGA-DJ-A1QF TCGA-DJ-A1QI TCGA-DJ-A1QN TCGA-DJ-A2PQ TCGA-DJ-A2PU 
        7.99        18.05         4.96         8.98        20.48        10.26 
TCGA-DJ-A2PV TCGA-DJ-A2PW TCGA-DJ-A2Q7 TCGA-DJ-A2QC TCGA-DJ-A3UN TCGA-DO-A1JZ 
        7.96         7.69         9.57         9.99        12.49        40.27 
TCGA-E3-A3E0 TCGA-E3-A3E5 TCGA-EM-A1CS TCGA-EM-A1CV TCGA-EM-A2CS TCGA-ET-A25K 
       50.76        14.04        19.07        66.08         9.34        19.36 
TCGA-ET-A25O TCGA-ET-A2MZ TCGA-ET-A2N4 TCGA-ET-A39J TCGA-ET-A39L TCGA-ET-A3BP 
        4.44        12.26         1.41        11.90         1.94         4.18 
TCGA-ET-A3BQ TCGA-ET-A3BW TCGA-FE-A3PA TCGA-FE-A3PD 
        2.43         2.37        65.82        62.89 

$subtype3
TCGA-BJ-A0YZ TCGA-BJ-A0Z0 TCGA-BJ-A0Z2 TCGA-BJ-A0ZA TCGA-BJ-A0ZC TCGA-BJ-A0ZE 
       15.75        11.70         7.63         8.68         6.02         7.79 
TCGA-BJ-A0ZF TCGA-BJ-A0ZG TCGA-BJ-A0ZJ TCGA-BJ-A18Y TCGA-BJ-A190 TCGA-BJ-A192 
        6.90         7.56         5.00         2.79         0.43         8.09 
TCGA-BJ-A28T TCGA-BJ-A28V TCGA-BJ-A3PT TCGA-CE-A27D TCGA-DE-A2OL TCGA-DJ-A13M 
        2.76         5.10        12.07         0.10         5.29         9.01 
TCGA-DJ-A13O TCGA-DJ-A13R TCGA-DJ-A13W TCGA-DJ-A1QG TCGA-DJ-A1QL TCGA-DJ-A1QM 
        7.07         3.02        14.93         6.97         6.97         0.99 
TCGA-DJ-A2PP TCGA-DJ-A2PS TCGA-DJ-A2Q0 TCGA-DJ-A2Q2 TCGA-DJ-A2QA TCGA-DJ-A2QB 
        5.00         1.94         8.12         6.77        12.43        10.85 
TCGA-DJ-A3US TCGA-DJ-A3UY TCGA-E3-A3DZ TCGA-E8-A413 TCGA-E8-A414 TCGA-E8-A415 
       20.71        13.32        12.00         0.33         0.23         0.16 
TCGA-E8-A416 TCGA-EM-A1CW TCGA-EM-A1YA TCGA-EM-A1YB TCGA-EM-A1YC TCGA-EM-A1YD 
        0.72         8.05         7.13         9.34        46.72        39.75 
TCGA-EM-A1YE TCGA-EM-A22J TCGA-EM-A22K TCGA-EM-A22L TCGA-EM-A22N TCGA-EM-A2CK 
       21.37         6.81         6.64         4.54         6.87         8.19 
TCGA-EM-A2CL TCGA-EM-A2CM TCGA-EM-A2CN TCGA-EM-A2CO TCGA-EM-A2CP TCGA-EM-A2CQ 
        6.87        11.74        11.31         6.02         2.96         6.54 
TCGA-EM-A2CT TCGA-ET-A25I TCGA-ET-A25P TCGA-ET-A39I TCGA-ET-A39N TCGA-ET-A39S 
       10.49         0.33         0.49         0.30        65.88         0.66 
TCGA-ET-A3DQ TCGA-ET-A3DS TCGA-ET-A3DV TCGA-FE-A239 TCGA-FY-A2QD TCGA-FY-A3I5 
       44.91         0.30        65.79        65.92         1.25         1.64 
TCGA-FY-A3NM TCGA-FY-A3NP TCGA-FY-A3R6 TCGA-FY-A3R7 TCGA-FY-A3R9 TCGA-H2-A2K9 
        0.99         0.59         0.76         0.03         2.17         4.77 
TCGA-H2-A3RH TCGA-J8-A3O0 TCGA-J8-A3O2 
        4.87        12.89         1.35 

subtype1 subtype2 subtype3 
    0.23     0.20     0.03 
subtype1 subtype2 subtype3 
   66.12    66.08    65.92 
subtype1 subtype2 subtype3 
   9.340   10.125    6.810 
[1] "0.2 - 66.1 (9.3)"  "0.2 - 66.1 (10.1)" "0.0 - 65.9 (6.8)" 
  [1] "subtype3" "subtype3" "subtype3" "subtype1" "subtype1" "subtype1"
  [7] "subtype3" "subtype1" "subtype3" "subtype3" "subtype3" "subtype3"
 [13] "subtype1" "subtype3" "subtype3" "subtype3" "subtype3" "subtype1"
 [19] "subtype3" "subtype3" "subtype1" "subtype3" "subtype2" "subtype3"
 [25] "subtype2" "subtype1" "subtype1" "subtype1" "subtype1" "subtype3"
 [31] "subtype2" "subtype3" "subtype3" "subtype2" "subtype3" "subtype2"
 [37] "subtype1" "subtype2" "subtype3" "subtype2" "subtype1" "subtype1"
 [43] "subtype2" "subtype3" "subtype1" "subtype2" "subtype3" "subtype3"
 [49] "subtype2" "subtype1" "subtype1" "subtype1" "subtype1" "subtype3"
 [55] "subtype2" "subtype1" "subtype3" "subtype2" "subtype2" "subtype2"
 [61] "subtype1" "subtype1" "subtype1" "subtype3" "subtype1" "subtype3"
 [67] "subtype1" "subtype1" "subtype1" "subtype1" "subtype2" "subtype1"
 [73] "subtype3" "subtype3" "subtype2" "subtype2" "subtype3" "subtype3"
 [79] "subtype2" "subtype1" "subtype1" "subtype3" "subtype2" "subtype1"
 [85] "subtype1" "subtype1" "subtype2" "subtype1" "subtype1" "subtype1"
 [91] "subtype3" "subtype3" "subtype3" "subtype3" "subtype1" "subtype1"
 [97] "subtype2" "subtype1" "subtype1" "subtype2" "subtype3" "subtype3"
[103] "subtype3" "subtype3" "subtype3" "subtype3" "subtype1" "subtype3"
[109] "subtype3" "subtype3" "subtype3" "subtype1" "subtype3" "subtype3"
[115] "subtype3" "subtype3" "subtype3" "subtype3" "subtype3" "subtype2"
[121] "subtype3" "subtype1" "subtype3" "subtype1" "subtype2" "subtype1"
[127] "subtype1" "subtype1" "subtype2" "subtype3" "subtype1" "subtype1"
[133] "subtype2" "subtype1" "subtype2" "subtype3" "subtype2" "subtype2"
[139] "subtype3" "subtype1" "subtype1" "subtype1" "subtype3" "subtype1"
[145] "subtype1" "subtype1" "subtype2" "subtype2" "subtype1" "subtype1"
[151] "subtype1" "subtype2" "subtype1" "subtype1" "subtype1" "subtype3"
[157] "subtype1" "subtype3" "subtype3" "subtype1" "subtype1" "subtype1"
[163] "subtype1" "subtype1" "subtype1" "subtype1" "subtype1" "subtype1"
[169] "subtype3" "subtype1" "subtype2" "subtype1" "subtype1" "subtype2"
[175] "subtype3" "subtype1" "subtype3" "subtype3" "subtype1" "subtype3"
[181] "subtype1" "subtype3" "subtype3" "subtype3" "subtype1" "subtype1"
[187] "subtype1" "subtype3" "subtype3" "subtype1" "subtype1" "subtype1"
[193] "subtype1" "subtype1" "subtype1" "subtype3" "subtype1" "subtype3"
  [1] "subtype3" "subtype3" "subtype3" "subtype1" "subtype1" "subtype1"
  [7] "subtype3" "subtype1" "subtype3" "subtype3" "subtype3" "subtype3"
 [13] "subtype1" "subtype3" "subtype3" "subtype3" "subtype3" "subtype1"
 [19] "subtype3" "subtype3" "subtype1" "subtype3" "subtype2" "subtype3"
 [25] "subtype2" "subtype1" "subtype1" "subtype1" "subtype1" "subtype3"
 [31] "subtype2" "subtype3" "subtype3" "subtype2" "subtype3" "subtype2"
 [37] "subtype1" "subtype2" "subtype3" "subtype2" "subtype1" "subtype1"
 [43] "subtype2" "subtype3" "subtype1" "subtype2" "subtype3" "subtype3"
 [49] "subtype2" "subtype1" "subtype1" "subtype1" "subtype1" "subtype3"
 [55] "subtype2" "subtype1" "subtype3" "subtype2" "subtype2" "subtype2"
 [61] "subtype1" "subtype1" "subtype1" "subtype3" "subtype1" "subtype3"
 [67] "subtype1" "subtype1" "subtype1" "subtype1" "subtype2" "subtype1"
 [73] "subtype3" "subtype3" "subtype2" "subtype2" "subtype3" "subtype3"
 [79] "subtype2" "subtype1" "subtype1" "subtype3" "subtype2" "subtype1"
 [85] "subtype1" "subtype1" "subtype2" "subtype1" "subtype1" "subtype1"
 [91] "subtype3" "subtype3" "subtype3" "subtype3" "subtype1" "subtype1"
 [97] "subtype2" "subtype1" "subtype1" "subtype2" "subtype3" "subtype3"
[103] "subtype3" "subtype3" "subtype3" "subtype3" "subtype1" "subtype3"
[109] "subtype3" "subtype3" "subtype3" "subtype1" "subtype3" "subtype3"
[115] "subtype3" "subtype3" "subtype3" "subtype3" "subtype3" "subtype2"
[121] "subtype3" "subtype1" "subtype3" "subtype1" "subtype2" "subtype1"
[127] "subtype1" "subtype1" "subtype2" "subtype3" "subtype1" "subtype1"
[133] "subtype2" "subtype1" "subtype2" "subtype3" "subtype2" "subtype2"
[139] "subtype3" "subtype1" "subtype1" "subtype1" "subtype3" "subtype1"
[145] "subtype1" "subtype1" "subtype2" "subtype2" "subtype1" "subtype1"
[151] "subtype1" "subtype2" "subtype1" "subtype1" "subtype1" "subtype3"
[157] "subtype1" "subtype3" "subtype3" "subtype1" "subtype1" "subtype1"
[163] "subtype1" "subtype1" "subtype1" "subtype1" "subtype1" "subtype1"
[169] "subtype3" "subtype1" "subtype2" "subtype1" "subtype1" "subtype2"
[175] "subtype3" "subtype1" "subtype3" "subtype3" "subtype1" "subtype3"
[181] "subtype1" "subtype3" "subtype3" "subtype3" "subtype1" "subtype1"
[187] "subtype1" "subtype3" "subtype3" "subtype1" "subtype1" "subtype1"
[193] "subtype1" "subtype1" "subtype1" "subtype3" "subtype1" "subtype3"
  [1] "subtype3" "subtype3" "subtype3" "subtype1" "subtype1" "subtype1"
  [7] "subtype3" "subtype1" "subtype3" "subtype3" "subtype3" "subtype3"
 [13] "subtype1" "subtype3" "subtype3" "subtype3" "subtype3" "subtype1"
 [19] "subtype3" "subtype3" "subtype1" "subtype3" "subtype2" "subtype3"
 [25] "subtype2" "subtype1" "subtype1" "subtype1" "subtype1" "subtype3"
 [31] "subtype2" "subtype3" "subtype3" "subtype2" "subtype3" "subtype2"
 [37] "subtype1" "subtype2" "subtype3" "subtype2" "subtype1" "subtype1"
 [43] "subtype2" "subtype3" "subtype1" "subtype2" "subtype3" "subtype3"
 [49] "subtype2" "subtype1" "subtype1" "subtype1" "subtype1" "subtype3"
 [55] "subtype2" "subtype1" "subtype3" "subtype2" "subtype2" "subtype2"
 [61] "subtype1" "subtype1" "subtype1" "subtype3" "subtype1" "subtype3"
 [67] "subtype1" "subtype1" "subtype1" "subtype1" "subtype2" "subtype1"
 [73] "subtype3" "subtype3" "subtype2" "subtype2" "subtype3" "subtype3"
 [79] "subtype2" "subtype1" "subtype1" "subtype3" "subtype2" "subtype1"
 [85] "subtype1" "subtype1" "subtype2" "subtype1" "subtype1" "subtype1"
 [91] "subtype3" "subtype3" "subtype3" "subtype3" "subtype1" "subtype1"
 [97] "subtype2" "subtype1" "subtype1" "subtype2" "subtype3" "subtype3"
[103] "subtype3" "subtype3" "subtype3" "subtype3" "subtype1" "subtype3"
[109] "subtype3" "subtype3" "subtype3" "subtype1" "subtype3" "subtype3"
[115] "subtype3" "subtype3" "subtype3" "subtype3" "subtype3" "subtype2"
[121] "subtype3" "subtype1" "subtype3" "subtype1" "subtype2" "subtype1"
[127] "subtype1" "subtype1" "subtype2" "subtype3" "subtype1" "subtype1"
[133] "subtype2" "subtype1" "subtype2" "subtype3" "subtype2" "subtype2"
[139] "subtype3" "subtype1" "subtype1" "subtype1" "subtype3" "subtype1"
[145] "subtype1" "subtype1" "subtype2" "subtype2" "subtype1" "subtype1"
[151] "subtype1" "subtype2" "subtype1" "subtype1" "subtype1" "subtype3"
[157] "subtype1" "subtype3" "subtype3" "subtype1" "subtype1" "subtype1"
[163] "subtype1" "subtype1" "subtype1" "subtype1" "subtype1" "subtype1"
[169] "subtype3" "subtype1" "subtype2" "subtype1" "subtype1" "subtype2"
[175] "subtype3" "subtype1" "subtype3" "subtype3" "subtype1" "subtype3"
[181] "subtype1" "subtype3" "subtype3" "subtype3" "subtype1" "subtype1"
[187] "subtype1" "subtype3" "subtype3" "subtype1" "subtype1" "subtype1"
[193] "subtype1" "subtype1" "subtype1" "subtype3" "subtype1" "subtype3"
D6V2, continuous
D6V3, binary
          cls
clus        0  1
  subtype1 65 24
  subtype2 28  6
  subtype3 53 22
[1] "tbl2"
          cls
clus       [,1] [,2]
  subtype1   65   24
  subtype2   28    6
  subtype3   53   22
        clus
vv       subtype1 subtype2 subtype3
  FEMALE       65       28       53
  MALE         24        6       22
D6V4, multiclass
D6V5, binary
          cls
clus        0  1
  subtype1 10 79
  subtype2  1 33
  subtype3  1 74
[1] "tbl2"
          cls
clus       [,1] [,2]
  subtype1   10   79
  subtype2    1   33
  subtype3    1   74
     clus
vv    subtype1 subtype2 subtype3
  NO        10        1        1
  YES       79       33       74
D6V6, binary
          cls
clus        0  1
  subtype1 73  4
  subtype2 29  1
  subtype3 60  3
[1] "tbl2"
          cls
clus       [,1] [,2]
  subtype1   73    4
  subtype2   29    1
  subtype3   60    3
     clus
vv    subtype1 subtype2 subtype3
  NO        73       29       60
  YES        4        1        3

Clustering(7) Variable = MIRSEQ_CNMF
D7V1, survival
          sevent
clus2       0  1
  subtype1 69  1
  subtype2 84  0
  subtype3 56  0
subtype1 subtype2 subtype3 
      70       84       56 
subtype1 subtype2 subtype3 
       1        0        0 
$subtype1
TCGA-BJ-A0YZ TCGA-BJ-A0Z0 TCGA-BJ-A0Z2 TCGA-BJ-A0ZA TCGA-BJ-A0ZC TCGA-BJ-A0ZE 
       15.75        11.70         7.63         8.68         6.02         7.79 
TCGA-BJ-A0ZF TCGA-BJ-A0ZG TCGA-BJ-A0ZJ TCGA-BJ-A18Y TCGA-BJ-A190 TCGA-BJ-A191 
        6.90         7.56         5.00         2.79         0.43         7.73 
TCGA-BJ-A192 TCGA-BJ-A28V TCGA-DE-A2OL TCGA-DJ-A13M TCGA-DJ-A13R TCGA-DJ-A13S 
        8.09         5.10         5.29         9.01         3.02         8.71 
TCGA-DJ-A13W TCGA-DJ-A1QG TCGA-DJ-A1QL TCGA-DJ-A2PP TCGA-DJ-A2Q0 TCGA-DJ-A2Q2 
       14.93         6.97         6.97         5.00         8.12         6.77 
TCGA-DJ-A2QB TCGA-DJ-A3US TCGA-DO-A1JZ TCGA-E3-A3DZ TCGA-E3-A3E5 TCGA-EM-A1CW 
       10.85        20.71        40.27        12.00        14.04         8.05 
TCGA-EM-A1YA TCGA-EM-A1YB TCGA-EM-A1YC TCGA-EM-A1YE TCGA-EM-A22J TCGA-EM-A22K 
        7.13         9.34        46.72        21.37         6.81         6.64 
TCGA-EM-A22L TCGA-EM-A22N TCGA-EM-A22Q TCGA-EM-A2CJ TCGA-EM-A2CK TCGA-EM-A2CL 
        4.54         6.87         6.31        11.44         8.19         6.87 
TCGA-EM-A2CM TCGA-EM-A2CN TCGA-EM-A2CO TCGA-EM-A2CP TCGA-EM-A2CQ TCGA-EM-A2CR 
       11.74        11.31         6.02         2.96         6.54         7.17 
TCGA-EM-A2CT TCGA-ET-A25I TCGA-ET-A25P TCGA-ET-A2N1 TCGA-ET-A2N5 TCGA-ET-A39I 
       10.49         0.33         0.49        14.76        38.86         0.30 
TCGA-ET-A39L TCGA-ET-A39N TCGA-ET-A3BW TCGA-ET-A3DS TCGA-ET-A3DV TCGA-FE-A236 
        1.94        65.88         2.37         0.30        65.79        65.88 
TCGA-FE-A239 TCGA-FY-A2QD TCGA-FY-A3I5 TCGA-FY-A3NM TCGA-FY-A3NP TCGA-FY-A3R9 
       65.92         1.25         1.64         0.99         0.59         2.17 
TCGA-H2-A2K9 TCGA-H2-A3RH TCGA-J8-A3O0 TCGA-J8-A3O1 
        4.77         4.87        12.89        13.64 

$subtype2
TCGA-BJ-A0Z3 TCGA-BJ-A0Z5 TCGA-BJ-A0Z9 TCGA-BJ-A0ZH TCGA-BJ-A28R TCGA-CE-A13K 
        5.98         6.48         8.25         0.72         4.87         0.53 
TCGA-CE-A3ME TCGA-DE-A0XZ TCGA-DE-A0Y2 TCGA-DE-A0Y3 TCGA-DE-A3KN TCGA-DJ-A13P 
        0.23        13.22         7.59        31.30         9.40        65.72 
TCGA-DJ-A13T TCGA-DJ-A13U TCGA-DJ-A13X TCGA-DJ-A1QI TCGA-DJ-A1QN TCGA-DJ-A2PN 
       24.92        12.92         7.99         4.96         8.98         9.99 
TCGA-DJ-A2PO TCGA-DJ-A2PQ TCGA-DJ-A2PR TCGA-DJ-A2PU TCGA-DJ-A2PW TCGA-DJ-A2PX 
        7.96        20.48        10.45        10.26         7.69         5.03 
TCGA-DJ-A2Q4 TCGA-DJ-A2Q5 TCGA-DJ-A2Q7 TCGA-DJ-A2QC TCGA-DJ-A3UN TCGA-DO-A1K0 
        9.44         9.90         9.57         9.99        12.49         3.06 
TCGA-E3-A3DY TCGA-E3-A3E0 TCGA-E3-A3E1 TCGA-E3-A3E2 TCGA-E3-A3E3 TCGA-EM-A1CS 
       31.07        50.76        40.18        46.72        20.88        19.07 
TCGA-EM-A1CT TCGA-EM-A1CV TCGA-EM-A22I TCGA-EM-A22M TCGA-EM-A22O TCGA-EM-A2CS 
        5.03        66.08         2.66         3.48         6.21         9.34 
TCGA-ET-A25G TCGA-ET-A25J TCGA-ET-A25K TCGA-ET-A25N TCGA-ET-A25O TCGA-ET-A25R 
       35.77        29.69        19.36         2.47         4.44        20.42 
TCGA-ET-A2MY TCGA-ET-A2MZ TCGA-ET-A2N4 TCGA-ET-A39J TCGA-ET-A39K TCGA-ET-A39M 
       19.04        12.26         1.41        11.90        65.95        65.88 
TCGA-ET-A39O TCGA-ET-A39R TCGA-ET-A39T TCGA-ET-A3BO TCGA-ET-A3BP TCGA-ET-A3BQ 
       43.04        46.45         7.79         5.82         4.18         2.43 
TCGA-ET-A3BS TCGA-ET-A3BX TCGA-ET-A3DO TCGA-ET-A3DT TCGA-ET-A3DW TCGA-FE-A230 
        5.52         4.50        65.92         4.77        24.69        47.41 
TCGA-FE-A231 TCGA-FE-A232 TCGA-FE-A233 TCGA-FE-A234 TCGA-FE-A235 TCGA-FE-A23A 
       12.30        44.25        24.69        43.82        65.82        62.70 
TCGA-FE-A3PA TCGA-FE-A3PC TCGA-FE-A3PD TCGA-FY-A3BL TCGA-FY-A3NN TCGA-FY-A3ON 
       65.82        61.41        62.89         1.15        66.12         1.51 
TCGA-FY-A3RA TCGA-H2-A3RI TCGA-IM-A3EB TCGA-IM-A3ED TCGA-IM-A3U3 TCGA-J8-A3NZ 
        9.14         2.96        35.18        30.87         3.25         2.24 

$subtype3
TCGA-BJ-A0ZB TCGA-BJ-A28T TCGA-BJ-A3PR TCGA-BJ-A3PT TCGA-CE-A27D TCGA-CE-A3MD 
        4.01         2.76         8.02        12.07         0.10         0.20 
TCGA-DJ-A13O TCGA-DJ-A1QD TCGA-DJ-A1QE TCGA-DJ-A1QF TCGA-DJ-A1QH TCGA-DJ-A1QM 
        7.07        10.98        65.85        18.05         7.99         0.99 
TCGA-DJ-A1QO TCGA-DJ-A1QQ TCGA-DJ-A2PS TCGA-DJ-A2PT TCGA-DJ-A2PV TCGA-DJ-A2PY 
        1.02         5.95         1.94         9.60         7.96         8.78 
TCGA-DJ-A2PZ TCGA-DJ-A2Q1 TCGA-DJ-A2Q3 TCGA-DJ-A2Q6 TCGA-DJ-A2Q8 TCGA-DJ-A2Q9 
        8.42         9.34         9.21         8.61         7.07        10.36 
TCGA-DJ-A2QA TCGA-DJ-A3UY TCGA-E8-A242 TCGA-E8-A2EA TCGA-E8-A2JQ TCGA-E8-A3X7 
       12.43        13.32         1.12         0.36        66.12         1.48 
TCGA-EM-A1CU TCGA-EM-A1YD TCGA-EM-A22P TCGA-EM-A2CU TCGA-ET-A25L TCGA-ET-A25M 
        7.04        39.75         5.72         5.79        14.79        12.33 
TCGA-ET-A2N0 TCGA-ET-A39P TCGA-ET-A39S TCGA-ET-A3BN TCGA-ET-A3BT TCGA-ET-A3BU 
       34.49        13.35         0.66         1.68        24.72         1.28 
TCGA-ET-A3BV TCGA-ET-A3DP TCGA-ET-A3DQ TCGA-ET-A3DR TCGA-ET-A3DU TCGA-FE-A22Z 
        1.84        50.50        44.91         2.14         4.54        51.45 
TCGA-FE-A237 TCGA-FE-A238 TCGA-FE-A3PB TCGA-FY-A3R6 TCGA-FY-A3R7 TCGA-GE-A2C6 
       65.92        39.95        65.88         0.76         0.03         6.77 
TCGA-H2-A26U TCGA-IM-A3U2 
        3.48         2.63 

subtype1 subtype2 subtype3 
    0.30     0.23     0.03 
subtype1 subtype2 subtype3 
   65.92    66.12    66.12 
subtype1 subtype2 subtype3 
   7.150   10.125    7.975 
[1] "0.3 - 65.9 (7.2)"  "0.2 - 66.1 (10.1)" "0.0 - 66.1 (8.0)" 
  [1] "subtype1" "subtype1" "subtype1" "subtype2" "subtype2" "subtype2"
  [7] "subtype1" "subtype3" "subtype1" "subtype1" "subtype1" "subtype1"
 [13] "subtype2" "subtype1" "subtype1" "subtype1" "subtype1" "subtype1"
 [19] "subtype2" "subtype3" "subtype1" "subtype3" "subtype3" "subtype2"
 [25] "subtype3" "subtype3" "subtype2" "subtype2" "subtype2" "subtype2"
 [31] "subtype1" "subtype2" "subtype1" "subtype3" "subtype2" "subtype1"
 [37] "subtype1" "subtype2" "subtype2" "subtype1" "subtype2" "subtype3"
 [43] "subtype3" "subtype3" "subtype1" "subtype3" "subtype2" "subtype1"
 [49] "subtype3" "subtype2" "subtype3" "subtype3" "subtype2" "subtype2"
 [55] "subtype1" "subtype2" "subtype2" "subtype3" "subtype3" "subtype2"
 [61] "subtype3" "subtype2" "subtype2" "subtype3" "subtype3" "subtype1"
 [67] "subtype3" "subtype1" "subtype3" "subtype2" "subtype2" "subtype3"
 [73] "subtype2" "subtype3" "subtype3" "subtype3" "subtype1" "subtype2"
 [79] "subtype2" "subtype1" "subtype3" "subtype1" "subtype2" "subtype2"
 [85] "subtype1" "subtype2" "subtype2" "subtype2" "subtype2" "subtype1"
 [91] "subtype3" "subtype3" "subtype3" "subtype3" "subtype2" "subtype2"
 [97] "subtype3" "subtype2" "subtype1" "subtype1" "subtype1" "subtype1"
[103] "subtype3" "subtype1" "subtype2" "subtype1" "subtype1" "subtype1"
[109] "subtype2" "subtype1" "subtype2" "subtype3" "subtype1" "subtype1"
[115] "subtype1" "subtype1" "subtype1" "subtype1" "subtype1" "subtype1"
[121] "subtype1" "subtype1" "subtype2" "subtype1" "subtype3" "subtype2"
[127] "subtype1" "subtype2" "subtype2" "subtype3" "subtype3" "subtype2"
[133] "subtype2" "subtype1" "subtype2" "subtype2" "subtype2" "subtype3"
[139] "subtype1" "subtype2" "subtype1" "subtype1" "subtype2" "subtype2"
[145] "subtype1" "subtype2" "subtype1" "subtype2" "subtype3" "subtype2"
[151] "subtype3" "subtype2" "subtype3" "subtype2" "subtype2" "subtype2"
[157] "subtype2" "subtype3" "subtype3" "subtype3" "subtype1" "subtype2"
[163] "subtype2" "subtype3" "subtype3" "subtype3" "subtype1" "subtype2"
[169] "subtype3" "subtype1" "subtype2" "subtype3" "subtype2" "subtype2"
[175] "subtype2" "subtype2" "subtype2" "subtype2" "subtype1" "subtype3"
[181] "subtype3" "subtype1" "subtype2" "subtype2" "subtype3" "subtype2"
[187] "subtype2" "subtype1" "subtype2" "subtype1" "subtype1" "subtype2"
[193] "subtype1" "subtype2" "subtype3" "subtype3" "subtype1" "subtype2"
[199] "subtype3" "subtype3" "subtype1" "subtype1" "subtype2" "subtype2"
[205] "subtype2" "subtype3" "subtype2" "subtype2" "subtype1" "subtype1"
  [1] "subtype1" "subtype1" "subtype1" "subtype2" "subtype2" "subtype2"
  [7] "subtype1" "subtype3" "subtype1" "subtype1" "subtype1" "subtype1"
 [13] "subtype2" "subtype1" "subtype1" "subtype1" "subtype1" "subtype1"
 [19] "subtype2" "subtype3" "subtype1" "subtype3" "subtype3" "subtype2"
 [25] "subtype3" "subtype3" "subtype2" "subtype2" "subtype2" "subtype2"
 [31] "subtype1" "subtype2" "subtype1" "subtype3" "subtype2" "subtype1"
 [37] "subtype1" "subtype2" "subtype2" "subtype1" "subtype2" "subtype3"
 [43] "subtype3" "subtype3" "subtype1" "subtype3" "subtype2" "subtype1"
 [49] "subtype3" "subtype2" "subtype3" "subtype3" "subtype2" "subtype2"
 [55] "subtype1" "subtype2" "subtype2" "subtype3" "subtype3" "subtype2"
 [61] "subtype3" "subtype2" "subtype2" "subtype3" "subtype3" "subtype1"
 [67] "subtype3" "subtype1" "subtype3" "subtype2" "subtype2" "subtype3"
 [73] "subtype2" "subtype3" "subtype3" "subtype3" "subtype1" "subtype2"
 [79] "subtype2" "subtype1" "subtype3" "subtype1" "subtype2" "subtype2"
 [85] "subtype1" "subtype2" "subtype2" "subtype2" "subtype2" "subtype1"
 [91] "subtype3" "subtype3" "subtype3" "subtype3" "subtype2" "subtype2"
 [97] "subtype3" "subtype2" "subtype1" "subtype1" "subtype1" "subtype1"
[103] "subtype3" "subtype1" "subtype2" "subtype1" "subtype1" "subtype1"
[109] "subtype2" "subtype1" "subtype2" "subtype3" "subtype1" "subtype1"
[115] "subtype1" "subtype1" "subtype1" "subtype1" "subtype1" "subtype1"
[121] "subtype1" "subtype1" "subtype2" "subtype1" "subtype3" "subtype2"
[127] "subtype1" "subtype2" "subtype2" "subtype3" "subtype3" "subtype2"
[133] "subtype2" "subtype1" "subtype2" "subtype2" "subtype2" "subtype3"
[139] "subtype1" "subtype2" "subtype1" "subtype1" "subtype2" "subtype2"
[145] "subtype1" "subtype2" "subtype1" "subtype2" "subtype3" "subtype2"
[151] "subtype3" "subtype2" "subtype3" "subtype2" "subtype2" "subtype2"
[157] "subtype2" "subtype3" "subtype3" "subtype3" "subtype1" "subtype2"
[163] "subtype2" "subtype3" "subtype3" "subtype3" "subtype1" "subtype2"
[169] "subtype3" "subtype1" "subtype2" "subtype3" "subtype2" "subtype2"
[175] "subtype2" "subtype2" "subtype2" "subtype2" "subtype1" "subtype3"
[181] "subtype3" "subtype1" "subtype2" "subtype2" "subtype3" "subtype2"
[187] "subtype2" "subtype1" "subtype2" "subtype1" "subtype1" "subtype2"
[193] "subtype1" "subtype2" "subtype3" "subtype3" "subtype1" "subtype2"
[199] "subtype3" "subtype3" "subtype1" "subtype1" "subtype2" "subtype2"
[205] "subtype2" "subtype3" "subtype2" "subtype2" "subtype1" "subtype1"
  [1] "subtype1" "subtype1" "subtype1" "subtype2" "subtype2" "subtype2"
  [7] "subtype1" "subtype3" "subtype1" "subtype1" "subtype1" "subtype1"
 [13] "subtype2" "subtype1" "subtype1" "subtype1" "subtype1" "subtype1"
 [19] "subtype2" "subtype3" "subtype1" "subtype3" "subtype3" "subtype2"
 [25] "subtype3" "subtype3" "subtype2" "subtype2" "subtype2" "subtype2"
 [31] "subtype1" "subtype2" "subtype1" "subtype3" "subtype2" "subtype1"
 [37] "subtype1" "subtype2" "subtype2" "subtype1" "subtype2" "subtype3"
 [43] "subtype3" "subtype3" "subtype1" "subtype3" "subtype2" "subtype1"
 [49] "subtype3" "subtype2" "subtype3" "subtype3" "subtype2" "subtype2"
 [55] "subtype1" "subtype2" "subtype2" "subtype3" "subtype3" "subtype2"
 [61] "subtype3" "subtype2" "subtype2" "subtype3" "subtype3" "subtype1"
 [67] "subtype3" "subtype1" "subtype3" "subtype2" "subtype2" "subtype3"
 [73] "subtype2" "subtype3" "subtype3" "subtype3" "subtype1" "subtype2"
 [79] "subtype2" "subtype1" "subtype3" "subtype1" "subtype2" "subtype2"
 [85] "subtype1" "subtype2" "subtype2" "subtype2" "subtype2" "subtype1"
 [91] "subtype3" "subtype3" "subtype3" "subtype3" "subtype2" "subtype2"
 [97] "subtype3" "subtype2" "subtype1" "subtype1" "subtype1" "subtype1"
[103] "subtype3" "subtype1" "subtype2" "subtype1" "subtype1" "subtype1"
[109] "subtype2" "subtype1" "subtype2" "subtype3" "subtype1" "subtype1"
[115] "subtype1" "subtype1" "subtype1" "subtype1" "subtype1" "subtype1"
[121] "subtype1" "subtype1" "subtype2" "subtype1" "subtype3" "subtype2"
[127] "subtype1" "subtype2" "subtype2" "subtype3" "subtype3" "subtype2"
[133] "subtype2" "subtype1" "subtype2" "subtype2" "subtype2" "subtype3"
[139] "subtype1" "subtype2" "subtype1" "subtype1" "subtype2" "subtype2"
[145] "subtype1" "subtype2" "subtype1" "subtype2" "subtype3" "subtype2"
[151] "subtype3" "subtype2" "subtype3" "subtype2" "subtype2" "subtype2"
[157] "subtype2" "subtype3" "subtype3" "subtype3" "subtype1" "subtype2"
[163] "subtype2" "subtype3" "subtype3" "subtype3" "subtype1" "subtype2"
[169] "subtype3" "subtype1" "subtype2" "subtype3" "subtype2" "subtype2"
[175] "subtype2" "subtype2" "subtype2" "subtype2" "subtype1" "subtype3"
[181] "subtype3" "subtype1" "subtype2" "subtype2" "subtype3" "subtype2"
[187] "subtype2" "subtype1" "subtype2" "subtype1" "subtype1" "subtype2"
[193] "subtype1" "subtype2" "subtype3" "subtype3" "subtype1" "subtype2"
[199] "subtype3" "subtype3" "subtype1" "subtype1" "subtype2" "subtype2"
[205] "subtype2" "subtype3" "subtype2" "subtype2" "subtype1" "subtype1"
D7V2, continuous
D7V3, binary
          cls
clus        0  1
  subtype1 48 22
  subtype2 62 22
  subtype3 45 11
[1] "tbl2"
          cls
clus       [,1] [,2]
  subtype1   48   22
  subtype2   62   22
  subtype3   45   11
        clus
vv       subtype1 subtype2 subtype3
  FEMALE       48       62       45
  MALE         22       22       11
D7V4, multiclass
D7V5, binary
          cls
clus        0  1
  subtype1  3 67
  subtype2  8 76
  subtype3  3 53
[1] "tbl2"
          cls
clus       [,1] [,2]
  subtype1    3   67
  subtype2    8   76
  subtype3    3   53
     clus
vv    subtype1 subtype2 subtype3
  NO         3        8        3
  YES       67       76       53
D7V6, binary
          cls
clus        0  1
  subtype1 59  3
  subtype2 67  4
  subtype3 49  2
[1] "tbl2"
          cls
clus       [,1] [,2]
  subtype1   59    3
  subtype2   67    4
  subtype3   49    2
     clus
vv    subtype1 subtype2 subtype3
  NO        59       67       49
  YES        3        4        2

Clustering(8) Variable = MIRSEQ_CHIERARCHICAL
D8V1, survival
          sevent
clus2       0  1
  subtype1 62  0
  subtype2 62  1
  subtype3 85  0
subtype1 subtype2 subtype3 
      62       63       85 
subtype1 subtype2 subtype3 
       0        1        0 
$subtype1
TCGA-BJ-A0ZB TCGA-BJ-A0ZG TCGA-BJ-A28T TCGA-BJ-A3PR TCGA-BJ-A3PT TCGA-CE-A27D 
        4.01         7.56         2.76         8.02        12.07         0.10 
TCGA-CE-A3MD TCGA-DJ-A13O TCGA-DJ-A1QD TCGA-DJ-A1QE TCGA-DJ-A1QH TCGA-DJ-A1QM 
        0.20         7.07        10.98        65.85         7.99         0.99 
TCGA-DJ-A1QO TCGA-DJ-A1QQ TCGA-DJ-A2PN TCGA-DJ-A2PS TCGA-DJ-A2PT TCGA-DJ-A2PV 
        1.02         5.95         9.99         1.94         9.60         7.96 
TCGA-DJ-A2PY TCGA-DJ-A2PZ TCGA-DJ-A2Q1 TCGA-DJ-A2Q3 TCGA-DJ-A2Q6 TCGA-DJ-A2Q8 
        8.78         8.42         9.34         9.21         8.61         7.07 
TCGA-DJ-A2Q9 TCGA-DJ-A2QA TCGA-DJ-A3UY TCGA-E8-A242 TCGA-E8-A2EA TCGA-E8-A2JQ 
       10.36        12.43        13.32         1.12         0.36        66.12 
TCGA-E8-A3X7 TCGA-EM-A1YD TCGA-EM-A22I TCGA-EM-A22P TCGA-EM-A2CU TCGA-ET-A25G 
        1.48        39.75         2.66         5.72         5.79        35.77 
TCGA-ET-A25L TCGA-ET-A25M TCGA-ET-A2MY TCGA-ET-A2N0 TCGA-ET-A39J TCGA-ET-A39O 
       14.79        12.33        19.04        34.49        11.90        43.04 
TCGA-ET-A39P TCGA-ET-A39S TCGA-ET-A3BN TCGA-ET-A3BT TCGA-ET-A3BU TCGA-ET-A3BV 
       13.35         0.66         1.68        24.72         1.28         1.84 
TCGA-ET-A3DO TCGA-ET-A3DQ TCGA-ET-A3DR TCGA-ET-A3DU TCGA-FE-A22Z TCGA-FE-A234 
       65.92        44.91         2.14         4.54        51.45        43.82 
TCGA-FE-A237 TCGA-FE-A3PB TCGA-FY-A3R6 TCGA-FY-A3R7 TCGA-GE-A2C6 TCGA-H2-A26U 
       65.92        65.88         0.76         0.03         6.77         3.48 
TCGA-IM-A3U2 TCGA-IM-A3U3 
        2.63         3.25 

$subtype2
TCGA-BJ-A0YZ TCGA-BJ-A0Z0 TCGA-BJ-A0Z2 TCGA-BJ-A0ZA TCGA-BJ-A0ZC TCGA-BJ-A0ZE 
       15.75        11.70         7.63         8.68         6.02         7.79 
TCGA-BJ-A0ZF TCGA-BJ-A18Y TCGA-BJ-A190 TCGA-BJ-A191 TCGA-BJ-A192 TCGA-BJ-A28V 
        6.90         2.79         0.43         7.73         8.09         5.10 
TCGA-DE-A2OL TCGA-DJ-A13M TCGA-DJ-A13R TCGA-DJ-A13S TCGA-DJ-A13W TCGA-DJ-A1QG 
        5.29         9.01         3.02         8.71        14.93         6.97 
TCGA-DJ-A1QL TCGA-DJ-A2PP TCGA-DJ-A2Q0 TCGA-DJ-A2Q2 TCGA-DJ-A2QB TCGA-DJ-A3US 
        6.97         5.00         8.12         6.77        10.85        20.71 
TCGA-E3-A3DZ TCGA-EM-A1CW TCGA-EM-A1YA TCGA-EM-A1YB TCGA-EM-A1YC TCGA-EM-A1YE 
       12.00         8.05         7.13         9.34        46.72        21.37 
TCGA-EM-A22J TCGA-EM-A22K TCGA-EM-A22L TCGA-EM-A22N TCGA-EM-A22Q TCGA-EM-A2CJ 
        6.81         6.64         4.54         6.87         6.31        11.44 
TCGA-EM-A2CK TCGA-EM-A2CL TCGA-EM-A2CM TCGA-EM-A2CN TCGA-EM-A2CO TCGA-EM-A2CP 
        8.19         6.87        11.74        11.31         6.02         2.96 
TCGA-EM-A2CQ TCGA-EM-A2CR TCGA-EM-A2CT TCGA-ET-A25I TCGA-ET-A25P TCGA-ET-A2N1 
        6.54         7.17        10.49         0.33         0.49        14.76 
TCGA-ET-A2N5 TCGA-ET-A39I TCGA-ET-A39N TCGA-ET-A3DS TCGA-ET-A3DV TCGA-FE-A239 
       38.86         0.30        65.88         0.30        65.79        65.92 
TCGA-FY-A2QD TCGA-FY-A3I5 TCGA-FY-A3NM TCGA-FY-A3NP TCGA-FY-A3R9 TCGA-H2-A2K9 
        1.25         1.64         0.99         0.59         2.17         4.77 
TCGA-H2-A3RH TCGA-J8-A3O0 TCGA-J8-A3O1 
        4.87        12.89        13.64 

$subtype3
TCGA-BJ-A0Z3 TCGA-BJ-A0Z5 TCGA-BJ-A0Z9 TCGA-BJ-A0ZH TCGA-BJ-A0ZJ TCGA-BJ-A28R 
        5.98         6.48         8.25         0.72         5.00         4.87 
TCGA-CE-A13K TCGA-CE-A3ME TCGA-DE-A0XZ TCGA-DE-A0Y2 TCGA-DE-A0Y3 TCGA-DE-A3KN 
        0.53         0.23        13.22         7.59        31.30         9.40 
TCGA-DJ-A13P TCGA-DJ-A13T TCGA-DJ-A13U TCGA-DJ-A13X TCGA-DJ-A1QF TCGA-DJ-A1QI 
       65.72        24.92        12.92         7.99        18.05         4.96 
TCGA-DJ-A1QN TCGA-DJ-A2PO TCGA-DJ-A2PQ TCGA-DJ-A2PR TCGA-DJ-A2PU TCGA-DJ-A2PW 
        8.98         7.96        20.48        10.45        10.26         7.69 
TCGA-DJ-A2PX TCGA-DJ-A2Q4 TCGA-DJ-A2Q5 TCGA-DJ-A2Q7 TCGA-DJ-A2QC TCGA-DJ-A3UN 
        5.03         9.44         9.90         9.57         9.99        12.49 
TCGA-DO-A1JZ TCGA-DO-A1K0 TCGA-E3-A3DY TCGA-E3-A3E0 TCGA-E3-A3E1 TCGA-E3-A3E2 
       40.27         3.06        31.07        50.76        40.18        46.72 
TCGA-E3-A3E3 TCGA-E3-A3E5 TCGA-EM-A1CS TCGA-EM-A1CT TCGA-EM-A1CU TCGA-EM-A1CV 
       20.88        14.04        19.07         5.03         7.04        66.08 
TCGA-EM-A22M TCGA-EM-A22O TCGA-EM-A2CS TCGA-ET-A25J TCGA-ET-A25K TCGA-ET-A25N 
        3.48         6.21         9.34        29.69        19.36         2.47 
TCGA-ET-A25O TCGA-ET-A25R TCGA-ET-A2MZ TCGA-ET-A2N4 TCGA-ET-A39K TCGA-ET-A39L 
        4.44        20.42        12.26         1.41        65.95         1.94 
TCGA-ET-A39M TCGA-ET-A39R TCGA-ET-A39T TCGA-ET-A3BO TCGA-ET-A3BP TCGA-ET-A3BQ 
       65.88        46.45         7.79         5.82         4.18         2.43 
TCGA-ET-A3BS TCGA-ET-A3BW TCGA-ET-A3BX TCGA-ET-A3DP TCGA-ET-A3DT TCGA-ET-A3DW 
        5.52         2.37         4.50        50.50         4.77        24.69 
TCGA-FE-A230 TCGA-FE-A231 TCGA-FE-A232 TCGA-FE-A233 TCGA-FE-A235 TCGA-FE-A236 
       47.41        12.30        44.25        24.69        65.82        65.88 
TCGA-FE-A238 TCGA-FE-A23A TCGA-FE-A3PA TCGA-FE-A3PC TCGA-FE-A3PD TCGA-FY-A3BL 
       39.95        62.70        65.82        61.41        62.89         1.15 
TCGA-FY-A3NN TCGA-FY-A3ON TCGA-FY-A3RA TCGA-H2-A3RI TCGA-IM-A3EB TCGA-IM-A3ED 
       66.12         1.51         9.14         2.96        35.18        30.87 
TCGA-J8-A3NZ 
        2.24 

subtype1 subtype2 subtype3 
    0.03     0.30     0.23 
subtype1 subtype2 subtype3 
   66.12    65.92    66.12 
subtype1 subtype2 subtype3 
   8.005    7.130    9.990 
[1] "0.0 - 66.1 (8.0)"  "0.3 - 65.9 (7.1)"  "0.2 - 66.1 (10.0)"
  [1] "subtype2" "subtype2" "subtype2" "subtype3" "subtype3" "subtype3"
  [7] "subtype2" "subtype1" "subtype2" "subtype2" "subtype2" "subtype1"
 [13] "subtype3" "subtype3" "subtype2" "subtype2" "subtype2" "subtype2"
 [19] "subtype3" "subtype1" "subtype2" "subtype1" "subtype1" "subtype3"
 [25] "subtype1" "subtype1" "subtype3" "subtype3" "subtype3" "subtype3"
 [31] "subtype2" "subtype3" "subtype2" "subtype1" "subtype3" "subtype2"
 [37] "subtype2" "subtype3" "subtype3" "subtype2" "subtype3" "subtype1"
 [43] "subtype1" "subtype3" "subtype2" "subtype1" "subtype3" "subtype2"
 [49] "subtype1" "subtype3" "subtype1" "subtype1" "subtype1" "subtype3"
 [55] "subtype2" "subtype3" "subtype3" "subtype1" "subtype1" "subtype3"
 [61] "subtype1" "subtype3" "subtype3" "subtype1" "subtype1" "subtype2"
 [67] "subtype1" "subtype2" "subtype1" "subtype3" "subtype3" "subtype1"
 [73] "subtype3" "subtype1" "subtype1" "subtype1" "subtype2" "subtype3"
 [79] "subtype3" "subtype2" "subtype1" "subtype3" "subtype3" "subtype3"
 [85] "subtype2" "subtype3" "subtype3" "subtype3" "subtype3" "subtype3"
 [91] "subtype1" "subtype1" "subtype1" "subtype1" "subtype3" "subtype3"
 [97] "subtype3" "subtype3" "subtype2" "subtype2" "subtype2" "subtype2"
[103] "subtype1" "subtype2" "subtype1" "subtype2" "subtype2" "subtype2"
[109] "subtype3" "subtype2" "subtype3" "subtype1" "subtype2" "subtype2"
[115] "subtype2" "subtype2" "subtype2" "subtype2" "subtype2" "subtype2"
[121] "subtype2" "subtype2" "subtype3" "subtype2" "subtype1" "subtype1"
[127] "subtype2" "subtype3" "subtype3" "subtype1" "subtype1" "subtype3"
[133] "subtype3" "subtype2" "subtype3" "subtype1" "subtype3" "subtype1"
[139] "subtype2" "subtype3" "subtype2" "subtype2" "subtype1" "subtype3"
[145] "subtype3" "subtype3" "subtype2" "subtype1" "subtype1" "subtype3"
[151] "subtype1" "subtype3" "subtype1" "subtype3" "subtype3" "subtype3"
[157] "subtype3" "subtype1" "subtype1" "subtype1" "subtype3" "subtype3"
[163] "subtype1" "subtype3" "subtype1" "subtype1" "subtype2" "subtype3"
[169] "subtype1" "subtype2" "subtype3" "subtype1" "subtype3" "subtype3"
[175] "subtype3" "subtype3" "subtype1" "subtype3" "subtype3" "subtype1"
[181] "subtype3" "subtype2" "subtype3" "subtype3" "subtype1" "subtype3"
[187] "subtype3" "subtype2" "subtype3" "subtype2" "subtype2" "subtype3"
[193] "subtype2" "subtype3" "subtype1" "subtype1" "subtype2" "subtype3"
[199] "subtype1" "subtype1" "subtype2" "subtype2" "subtype3" "subtype3"
[205] "subtype3" "subtype1" "subtype1" "subtype3" "subtype2" "subtype2"
  [1] "subtype2" "subtype2" "subtype2" "subtype3" "subtype3" "subtype3"
  [7] "subtype2" "subtype1" "subtype2" "subtype2" "subtype2" "subtype1"
 [13] "subtype3" "subtype3" "subtype2" "subtype2" "subtype2" "subtype2"
 [19] "subtype3" "subtype1" "subtype2" "subtype1" "subtype1" "subtype3"
 [25] "subtype1" "subtype1" "subtype3" "subtype3" "subtype3" "subtype3"
 [31] "subtype2" "subtype3" "subtype2" "subtype1" "subtype3" "subtype2"
 [37] "subtype2" "subtype3" "subtype3" "subtype2" "subtype3" "subtype1"
 [43] "subtype1" "subtype3" "subtype2" "subtype1" "subtype3" "subtype2"
 [49] "subtype1" "subtype3" "subtype1" "subtype1" "subtype1" "subtype3"
 [55] "subtype2" "subtype3" "subtype3" "subtype1" "subtype1" "subtype3"
 [61] "subtype1" "subtype3" "subtype3" "subtype1" "subtype1" "subtype2"
 [67] "subtype1" "subtype2" "subtype1" "subtype3" "subtype3" "subtype1"
 [73] "subtype3" "subtype1" "subtype1" "subtype1" "subtype2" "subtype3"
 [79] "subtype3" "subtype2" "subtype1" "subtype3" "subtype3" "subtype3"
 [85] "subtype2" "subtype3" "subtype3" "subtype3" "subtype3" "subtype3"
 [91] "subtype1" "subtype1" "subtype1" "subtype1" "subtype3" "subtype3"
 [97] "subtype3" "subtype3" "subtype2" "subtype2" "subtype2" "subtype2"
[103] "subtype1" "subtype2" "subtype1" "subtype2" "subtype2" "subtype2"
[109] "subtype3" "subtype2" "subtype3" "subtype1" "subtype2" "subtype2"
[115] "subtype2" "subtype2" "subtype2" "subtype2" "subtype2" "subtype2"
[121] "subtype2" "subtype2" "subtype3" "subtype2" "subtype1" "subtype1"
[127] "subtype2" "subtype3" "subtype3" "subtype1" "subtype1" "subtype3"
[133] "subtype3" "subtype2" "subtype3" "subtype1" "subtype3" "subtype1"
[139] "subtype2" "subtype3" "subtype2" "subtype2" "subtype1" "subtype3"
[145] "subtype3" "subtype3" "subtype2" "subtype1" "subtype1" "subtype3"
[151] "subtype1" "subtype3" "subtype1" "subtype3" "subtype3" "subtype3"
[157] "subtype3" "subtype1" "subtype1" "subtype1" "subtype3" "subtype3"
[163] "subtype1" "subtype3" "subtype1" "subtype1" "subtype2" "subtype3"
[169] "subtype1" "subtype2" "subtype3" "subtype1" "subtype3" "subtype3"
[175] "subtype3" "subtype3" "subtype1" "subtype3" "subtype3" "subtype1"
[181] "subtype3" "subtype2" "subtype3" "subtype3" "subtype1" "subtype3"
[187] "subtype3" "subtype2" "subtype3" "subtype2" "subtype2" "subtype3"
[193] "subtype2" "subtype3" "subtype1" "subtype1" "subtype2" "subtype3"
[199] "subtype1" "subtype1" "subtype2" "subtype2" "subtype3" "subtype3"
[205] "subtype3" "subtype1" "subtype1" "subtype3" "subtype2" "subtype2"
  [1] "subtype2" "subtype2" "subtype2" "subtype3" "subtype3" "subtype3"
  [7] "subtype2" "subtype1" "subtype2" "subtype2" "subtype2" "subtype1"
 [13] "subtype3" "subtype3" "subtype2" "subtype2" "subtype2" "subtype2"
 [19] "subtype3" "subtype1" "subtype2" "subtype1" "subtype1" "subtype3"
 [25] "subtype1" "subtype1" "subtype3" "subtype3" "subtype3" "subtype3"
 [31] "subtype2" "subtype3" "subtype2" "subtype1" "subtype3" "subtype2"
 [37] "subtype2" "subtype3" "subtype3" "subtype2" "subtype3" "subtype1"
 [43] "subtype1" "subtype3" "subtype2" "subtype1" "subtype3" "subtype2"
 [49] "subtype1" "subtype3" "subtype1" "subtype1" "subtype1" "subtype3"
 [55] "subtype2" "subtype3" "subtype3" "subtype1" "subtype1" "subtype3"
 [61] "subtype1" "subtype3" "subtype3" "subtype1" "subtype1" "subtype2"
 [67] "subtype1" "subtype2" "subtype1" "subtype3" "subtype3" "subtype1"
 [73] "subtype3" "subtype1" "subtype1" "subtype1" "subtype2" "subtype3"
 [79] "subtype3" "subtype2" "subtype1" "subtype3" "subtype3" "subtype3"
 [85] "subtype2" "subtype3" "subtype3" "subtype3" "subtype3" "subtype3"
 [91] "subtype1" "subtype1" "subtype1" "subtype1" "subtype3" "subtype3"
 [97] "subtype3" "subtype3" "subtype2" "subtype2" "subtype2" "subtype2"
[103] "subtype1" "subtype2" "subtype1" "subtype2" "subtype2" "subtype2"
[109] "subtype3" "subtype2" "subtype3" "subtype1" "subtype2" "subtype2"
[115] "subtype2" "subtype2" "subtype2" "subtype2" "subtype2" "subtype2"
[121] "subtype2" "subtype2" "subtype3" "subtype2" "subtype1" "subtype1"
[127] "subtype2" "subtype3" "subtype3" "subtype1" "subtype1" "subtype3"
[133] "subtype3" "subtype2" "subtype3" "subtype1" "subtype3" "subtype1"
[139] "subtype2" "subtype3" "subtype2" "subtype2" "subtype1" "subtype3"
[145] "subtype3" "subtype3" "subtype2" "subtype1" "subtype1" "subtype3"
[151] "subtype1" "subtype3" "subtype1" "subtype3" "subtype3" "subtype3"
[157] "subtype3" "subtype1" "subtype1" "subtype1" "subtype3" "subtype3"
[163] "subtype1" "subtype3" "subtype1" "subtype1" "subtype2" "subtype3"
[169] "subtype1" "subtype2" "subtype3" "subtype1" "subtype3" "subtype3"
[175] "subtype3" "subtype3" "subtype1" "subtype3" "subtype3" "subtype1"
[181] "subtype3" "subtype2" "subtype3" "subtype3" "subtype1" "subtype3"
[187] "subtype3" "subtype2" "subtype3" "subtype2" "subtype2" "subtype3"
[193] "subtype2" "subtype3" "subtype1" "subtype1" "subtype2" "subtype3"
[199] "subtype1" "subtype1" "subtype2" "subtype2" "subtype3" "subtype3"
[205] "subtype3" "subtype1" "subtype1" "subtype3" "subtype2" "subtype2"
D8V2, continuous
D8V3, binary
          cls
clus        0  1
  subtype1 50 12
  subtype2 45 18
  subtype3 60 25
[1] "tbl2"
          cls
clus       [,1] [,2]
  subtype1   50   12
  subtype2   45   18
  subtype3   60   25
        clus
vv       subtype1 subtype2 subtype3
  FEMALE       50       45       60
  MALE         12       18       25
D8V4, multiclass
D8V5, binary
          cls
clus        0  1
  subtype1  3 59
  subtype2  1 62
  subtype3 10 75
[1] "tbl2"
          cls
clus       [,1] [,2]
  subtype1    3   59
  subtype2    1   62
  subtype3   10   75
     clus
vv    subtype1 subtype2 subtype3
  NO         3        1       10
  YES       59       62       75
D8V6, binary
          cls
clus        0  1
  subtype1 56  2
  subtype2 52  3
  subtype3 67  4
[1] "tbl2"
          cls
clus       [,1] [,2]
  subtype1   56    2
  subtype2   52    3
  subtype3   67    4
     clus
vv    subtype1 subtype2 subtype3
  NO        56       52       67
  YES        2        3        4
                                    V1.D 
                         "Time to Death" 
                                      V2 
                                   "AGE" 
                                      V3 
                                "GENDER" 
                                      V4 
                     "HISTOLOGICAL.TYPE" 
                                      V5 
"RADIATIONS.RADIATION.REGIMENINDICATION" 
                                      V6 
                     "RADIATIONEXPOSURE" 
> q(save="no")
